BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 042844
         (372 letters)

Database: nr 
           23,463,169 sequences; 8,064,228,071 total letters

Searching..................................................done



>gi|224129274|ref|XP_002320544.1| predicted protein [Populus trichocarpa]
 gi|222861317|gb|EEE98859.1| predicted protein [Populus trichocarpa]
          Length = 413

 Score =  494 bits (1272), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 250/346 (72%), Positives = 286/346 (82%), Gaps = 5/346 (1%)

Query: 30  VSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWG 89
           +SFGDGS GALGLPTSL G G DAYEPT V GLPSD+TSVSAGHYHSLAVT++G +WAWG
Sbjct: 1   MSFGDGSHGALGLPTSLIGHGMDAYEPTPVTGLPSDITSVSAGHYHSLAVTSHGQLWAWG 60

Query: 90  RNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRG 149
           RN+EVQLGRG L  R TWN+PKRVEGLDQV V AAFASGVVS+AIGDDGSLWVWGKSKRG
Sbjct: 61  RNHEVQLGRGLLSPRDTWNEPKRVEGLDQVQVTAAFASGVVSAAIGDDGSLWVWGKSKRG 120

Query: 150 QLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGK 209
           QLGLGK ITEA VPS+VEAL G+KI KVSFGWGH LAQT +GKLFGWGY ADGR+G +G 
Sbjct: 121 QLGLGKGITEASVPSKVEALEGQKIAKVSFGWGHTLAQTVEGKLFGWGYLADGRLGKMGG 180

Query: 210 ALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVE---GVEV 266
            +E+SPLDS+++      + I+ ST+E A++LV EGMEKEK MPI+W+P  VE   GVEV
Sbjct: 181 LVEASPLDSSMNVVKH--EVITQSTVEVAERLVLEGMEKEKDMPIVWDPCSVEELKGVEV 238

Query: 267 VDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFHPVSISSGLGHSLA 326
           VDIACG DHSLVL R+G LLS GSNVYGQLGR   DMG FPVDI+F  ++I+SGLGHSLA
Sbjct: 239 VDIACGLDHSLVLCRDGTLLSSGSNVYGQLGRANHDMGFFPVDISFPALAIASGLGHSLA 298

Query: 327 ICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPDNVPLVVEGLEGES 372
           IC+ +S    G A  IVSWGWN+SSQLGR GP+NVP+ VEGL GE+
Sbjct: 299 ICQAKSPEGKGDATSIVSWGWNQSSQLGRPGPENVPMEVEGLAGET 344



 Score = 51.6 bits (122), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 62/233 (26%), Positives = 95/233 (40%), Gaps = 54/233 (23%)

Query: 54  YEPTRVPGLPS-DVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGR-----GALESRATW 107
           ++P  V  L   +V  ++ G  HSL +  +G + + G N   QLGR     G      ++
Sbjct: 225 WDPCSVEELKGVEVVDIACGLDHSLVLCRDGTLLSSGSNVYGQLGRANHDMGFFPVDISF 284

Query: 108 NDPKRVEGLDQ-VNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRV 166
                  GL   + +C A +        GD  S+  WG ++  QLG         VP  V
Sbjct: 285 PALAIASGLGHSLAICQAKSP----EGKGDATSIVSWGWNQSSQLGRPGPEN---VPMEV 337

Query: 167 EALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSES 226
           E LAGE  + VS G  H++A T  G+++ WG   +GR+G          + S+ D +   
Sbjct: 338 EGLAGETAILVSGGRVHSIAVTSKGEVWVWGCGRNGRLG----------IGSSCDEAE-- 385

Query: 227 DQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVL 279
                                     PI+ +    EG EV+    GFDH+L+L
Sbjct: 386 --------------------------PIMLDSL--EGCEVLQAVSGFDHNLIL 410


>gi|449457540|ref|XP_004146506.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC2-like [Cucumis
           sativus]
 gi|449499975|ref|XP_004160968.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC2-like [Cucumis
           sativus]
          Length = 452

 Score =  493 bits (1270), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 238/354 (67%), Positives = 291/354 (82%), Gaps = 6/354 (1%)

Query: 22  RSASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTN 81
           R  S  AV+SFGDGS GA+GLPTSLTG+GG AYEPT VPGLPS VT+V+AGHYHSLA+ +
Sbjct: 33  RCISSRAVMSFGDGSHGAIGLPTSLTGIGGSAYEPTTVPGLPSHVTTVAAGHYHSLALDS 92

Query: 82  NGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLW 141
            G +WAWGR++E QLGRG    R +WN PKRV GLDQVN+C+AFASGVVS+A+GDDGSLW
Sbjct: 93  QGCLWAWGRDHEAQLGRGFASPRDSWNVPKRVIGLDQVNICSAFASGVVSAALGDDGSLW 152

Query: 142 VWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSAD 201
           +WGKSKRGQLGLG+D+TEA++PSRV+AL GEKIVKVSFGWGHALA +EDGKLFGWGY AD
Sbjct: 153 IWGKSKRGQLGLGEDVTEAVIPSRVQALEGEKIVKVSFGWGHALAFSEDGKLFGWGYYAD 212

Query: 202 GRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLV 261
           GR+GN+G+ ++ SPLDS+  RS+   ++     IE A++LV E ME+EK MPIIWEP LV
Sbjct: 213 GRLGNVGRTMKMSPLDSSSYRSTTGQEQ---PNIELAERLVLESMEEEKNMPIIWEPHLV 269

Query: 262 E---GVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFHPVSIS 318
           E    VEVVDIACG DHSLVL R+G LLSCGSN+YGQLGR  QD+G+ PVD +FH  SI+
Sbjct: 270 EDETAVEVVDIACGLDHSLVLCRDGTLLSCGSNIYGQLGRVTQDLGLLPVDSSFHVKSIA 329

Query: 319 SGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPDNVPLVVEGLEGES 372
           +GLGHSLA+C+  S+     A  ++SWGWN++SQLGR+GP+N+PL +EGL GE+
Sbjct: 330 AGLGHSLALCQDTSNKDIRDATSVISWGWNQTSQLGRVGPNNIPLAIEGLAGET 383



 Score = 52.8 bits (125), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 45/157 (28%), Positives = 73/157 (46%), Gaps = 11/157 (7%)

Query: 65  DVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGR-----GALESRATWNDPKRVEGLDQV 119
           +V  ++ G  HSL +  +G + + G N   QLGR     G L   ++++      GL   
Sbjct: 276 EVVDIACGLDHSLVLCRDGTLLSCGSNIYGQLGRVTQDLGLLPVDSSFHVKSIAAGLGH- 334

Query: 120 NVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSF 179
               A      +  I D  S+  WG ++  QLG    +    +P  +E LAGE  + +S 
Sbjct: 335 --SLALCQDTSNKDIRDATSVISWGWNQTSQLG---RVGPNNIPLAIEGLAGETPISLSG 389

Query: 180 GWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPL 216
           G  H++A    G+++ WG   DGR+G    + ES P+
Sbjct: 390 GRAHSIALGSKGEVWVWGCGRDGRLGLGSSSDESEPV 426


>gi|225447438|ref|XP_002266143.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC2-like [Vitis
           vinifera]
          Length = 432

 Score =  489 bits (1260), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 253/358 (70%), Positives = 286/358 (79%), Gaps = 11/358 (3%)

Query: 18  RIFMRSASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSL 77
           R F  S+S  +V+SFGDGS GALGLP+SL G+GGDAYEPT VPGLPSDV SVSAGHYHSL
Sbjct: 14  RCF--SSSARSVMSFGDGSHGALGLPSSLIGLGGDAYEPTPVPGLPSDVCSVSAGHYHSL 71

Query: 78  AVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDD 137
           AVT  G VWAWGRN+E QLGRG L  R +WN P RVEGL+QV V AAFASGV+S+AIGDD
Sbjct: 72  AVTAQGEVWAWGRNHEGQLGRGLLAPRDSWNVPTRVEGLNQVKVRAAFASGVISTAIGDD 131

Query: 138 GSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWG 197
           GSLWVWGKSK GQLGLGK I+E +VPSRVEALA EKIVKVS GWGHALAQTEDGKLFGWG
Sbjct: 132 GSLWVWGKSKHGQLGLGKGISETVVPSRVEALAREKIVKVSLGWGHALAQTEDGKLFGWG 191

Query: 198 YSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWE 257
           YSADGR+G +GKALE  PL+S  DR      E+SSS +E A+ +V +G+EKEK MPIIWE
Sbjct: 192 YSADGRLGQVGKALEVFPLNSVADR------ELSSSKLEVAENMVLKGIEKEKNMPIIWE 245

Query: 258 PFLVE---GVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFHP 314
           P L+E   GV +VD+ACG DHSLVL  NG LLS GSN+YGQLGR  QD GM PV  +F P
Sbjct: 246 PSLIEEENGVGIVDVACGLDHSLVLCVNGNLLSGGSNIYGQLGRVAQDYGMVPVTTSFIP 305

Query: 315 VSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPDNVPLVVEGLEGES 372
           +SISSGLGHSLAIC+V SS   GGA  I+SWGWN+  QLGR GP + PL V+GL GE+
Sbjct: 306 ISISSGLGHSLAICQVESSEAIGGATSIISWGWNQFFQLGRAGPGSCPLAVKGLAGET 363



 Score = 55.1 bits (131), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 65/223 (29%), Positives = 94/223 (42%), Gaps = 53/223 (23%)

Query: 66  VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGR-----GALESRATWNDPKRVEGLDQ-V 119
           +  V+ G  HSL +  NG + + G N   QLGR     G +    ++       GL   +
Sbjct: 257 IVDVACGLDHSLVLCVNGNLLSGGSNIYGQLGRVAQDYGMVPVTTSFIPISISSGLGHSL 316

Query: 120 NVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSF 179
            +C   +S     AIG   S+  WG ++  QLG     +    P  V+ LAGE  V VS 
Sbjct: 317 AICQVESS----EAIGGATSIISWGWNQFFQLGRAGPGS---CPLAVKGLAGETPVAVSG 369

Query: 180 GWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQ 239
           G  H++A T  G+++ WG    GR+G          L S+ D       E+  S +E   
Sbjct: 370 GRAHSIALTSKGEVWVWGCGKSGRLG----------LGSSTD-------EVEPSLLE--- 409

Query: 240 KLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRN 282
                                +EG EV+ +A GFDH+LVL  N
Sbjct: 410 --------------------YLEGSEVLQVASGFDHNLVLVAN 432



 Score = 38.5 bits (88), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 40/84 (47%), Gaps = 1/84 (1%)

Query: 48  GVGGDAYEPTRVPGLPSDV-TSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRAT 106
           G  G    P  V GL  +   +VS G  HS+A+T+ G VW WG     +LG G+      
Sbjct: 345 GRAGPGSCPLAVKGLAGETPVAVSGGRAHSIALTSKGEVWVWGCGKSGRLGLGSSTDEVE 404

Query: 107 WNDPKRVEGLDQVNVCAAFASGVV 130
            +  + +EG + + V + F   +V
Sbjct: 405 PSLLEYLEGSEVLQVASGFDHNLV 428


>gi|296085080|emb|CBI28495.3| unnamed protein product [Vitis vinifera]
          Length = 426

 Score =  489 bits (1259), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 253/358 (70%), Positives = 286/358 (79%), Gaps = 11/358 (3%)

Query: 18  RIFMRSASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSL 77
           R F  S+S  +V+SFGDGS GALGLP+SL G+GGDAYEPT VPGLPSDV SVSAGHYHSL
Sbjct: 8   RCF--SSSARSVMSFGDGSHGALGLPSSLIGLGGDAYEPTPVPGLPSDVCSVSAGHYHSL 65

Query: 78  AVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDD 137
           AVT  G VWAWGRN+E QLGRG L  R +WN P RVEGL+QV V AAFASGV+S+AIGDD
Sbjct: 66  AVTAQGEVWAWGRNHEGQLGRGLLAPRDSWNVPTRVEGLNQVKVRAAFASGVISTAIGDD 125

Query: 138 GSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWG 197
           GSLWVWGKSK GQLGLGK I+E +VPSRVEALA EKIVKVS GWGHALAQTEDGKLFGWG
Sbjct: 126 GSLWVWGKSKHGQLGLGKGISETVVPSRVEALAREKIVKVSLGWGHALAQTEDGKLFGWG 185

Query: 198 YSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWE 257
           YSADGR+G +GKALE  PL+S  DR      E+SSS +E A+ +V +G+EKEK MPIIWE
Sbjct: 186 YSADGRLGQVGKALEVFPLNSVADR------ELSSSKLEVAENMVLKGIEKEKNMPIIWE 239

Query: 258 PFLVE---GVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFHP 314
           P L+E   GV +VD+ACG DHSLVL  NG LLS GSN+YGQLGR  QD GM PV  +F P
Sbjct: 240 PSLIEEENGVGIVDVACGLDHSLVLCVNGNLLSGGSNIYGQLGRVAQDYGMVPVTTSFIP 299

Query: 315 VSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPDNVPLVVEGLEGES 372
           +SISSGLGHSLAIC+V SS   GGA  I+SWGWN+  QLGR GP + PL V+GL GE+
Sbjct: 300 ISISSGLGHSLAICQVESSEAIGGATSIISWGWNQFFQLGRAGPGSCPLAVKGLAGET 357



 Score = 54.7 bits (130), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 65/223 (29%), Positives = 94/223 (42%), Gaps = 53/223 (23%)

Query: 66  VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGR-----GALESRATWNDPKRVEGLDQ-V 119
           +  V+ G  HSL +  NG + + G N   QLGR     G +    ++       GL   +
Sbjct: 251 IVDVACGLDHSLVLCVNGNLLSGGSNIYGQLGRVAQDYGMVPVTTSFIPISISSGLGHSL 310

Query: 120 NVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSF 179
            +C   +S     AIG   S+  WG ++  QLG     +    P  V+ LAGE  V VS 
Sbjct: 311 AICQVESS----EAIGGATSIISWGWNQFFQLGRAGPGS---CPLAVKGLAGETPVAVSG 363

Query: 180 GWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQ 239
           G  H++A T  G+++ WG    GR+G          L S+ D       E+  S +E   
Sbjct: 364 GRAHSIALTSKGEVWVWGCGKSGRLG----------LGSSTD-------EVEPSLLE--- 403

Query: 240 KLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRN 282
                                +EG EV+ +A GFDH+LVL  N
Sbjct: 404 --------------------YLEGSEVLQVASGFDHNLVLVAN 426



 Score = 38.5 bits (88), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 40/84 (47%), Gaps = 1/84 (1%)

Query: 48  GVGGDAYEPTRVPGLPSDV-TSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRAT 106
           G  G    P  V GL  +   +VS G  HS+A+T+ G VW WG     +LG G+      
Sbjct: 339 GRAGPGSCPLAVKGLAGETPVAVSGGRAHSIALTSKGEVWVWGCGKSGRLGLGSSTDEVE 398

Query: 107 WNDPKRVEGLDQVNVCAAFASGVV 130
            +  + +EG + + V + F   +V
Sbjct: 399 PSLLEYLEGSEVLQVASGFDHNLV 422


>gi|255567172|ref|XP_002524567.1| cell cycle regulatory protein, putative [Ricinus communis]
 gi|223536120|gb|EEF37775.1| cell cycle regulatory protein, putative [Ricinus communis]
          Length = 441

 Score =  478 bits (1231), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 239/374 (63%), Positives = 288/374 (77%), Gaps = 9/374 (2%)

Query: 1   MRLLKSVVHNHVNVLTSRIFMRSASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVP 60
           +R L     N +N     I   +   T V+SFGDGS GALGLP SLTG+G DAYEPT V 
Sbjct: 4   IRALLRKEQNLLNATRRCISSFNHRDTIVMSFGDGSHGALGLPNSLTGLGTDAYEPTIVS 63

Query: 61  GLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVN 120
           GLPSD+  V+AGHYHSLAVT+ G +WAWGRNNE QLGR     R TWN+PKRVEGL++V+
Sbjct: 64  GLPSDIVGVTAGHYHSLAVTSTGQLWAWGRNNEAQLGRCIPAPRDTWNEPKRVEGLNKVH 123

Query: 121 VCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFG 180
           + +A+ASGVVS+AI +DGSLWVWGKSKRGQLGLGK ITEA VPS++EALAG KI KVSFG
Sbjct: 124 ILSAYASGVVSAAIANDGSLWVWGKSKRGQLGLGKGITEAFVPSKIEALAGTKIAKVSFG 183

Query: 181 WGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQK 240
           WGHALA +E+GKLFGWGYSADGR+G +  ALE S LDSN      ++Q++    +E +++
Sbjct: 184 WGHALALSEEGKLFGWGYSADGRLGKIMGALEVSALDSN------ANQQVPKLMLEASER 237

Query: 241 LVSEGMEKEKYMPIIWEPFLVE---GVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLG 297
           LV EGMEKE  MPI+W+P LVE   G +VVDIACG DHSLVL  +G LLS GSN+YGQLG
Sbjct: 238 LVLEGMEKENDMPILWDPCLVEELHGTKVVDIACGLDHSLVLCCDGTLLSSGSNIYGQLG 297

Query: 298 REKQDMGMFPVDINFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMG 357
           R   ++G+FPVD+N HP SI++GLGHSLAIC   SS+  G AR IVSWGWN+SSQLGR+G
Sbjct: 298 RANHEIGLFPVDLNIHPSSIAAGLGHSLAICRAASSDAEGDARNIVSWGWNQSSQLGRLG 357

Query: 358 PDNVPLVVEGLEGE 371
           P+ +PL +EGL GE
Sbjct: 358 PEGIPLEIEGLAGE 371



 Score = 55.5 bits (132), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 70/237 (29%), Positives = 101/237 (42%), Gaps = 62/237 (26%)

Query: 54  YEPTRVPGLP-SDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGR-----GALESRATW 107
           ++P  V  L  + V  ++ G  HSL +  +G + + G N   QLGR     G        
Sbjct: 253 WDPCLVEELHGTKVVDIACGLDHSLVLCCDGTLLSSGSNIYGQLGRANHEIGLFPVDLNI 312

Query: 108 NDPKRVEGLDQ-VNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLG-LGKDITEAIVPSR 165
           +      GL   + +C A +S     A GD  ++  WG ++  QLG LG +     +P  
Sbjct: 313 HPSSIAAGLGHSLAICRAASS----DAEGDARNIVSWGWNQSSQLGRLGPEG----IPLE 364

Query: 166 VEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSE 225
           +E LAGE  V VS G  H++A T  G+++ WG   +GR+G LG               S 
Sbjct: 365 IEGLAGEIPVSVSGGRVHSIALTSKGEVWVWGCGKNGRLG-LG---------------SS 408

Query: 226 SDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFL---VEGVEVVDIACGFDHSLVL 279
           SD+                            EP L   +EG EV+ I  GFDH+LVL
Sbjct: 409 SDEA---------------------------EPILLDSLEGYEVLQIVSGFDHNLVL 438


>gi|388498790|gb|AFK37461.1| unknown [Lotus japonicus]
          Length = 433

 Score =  463 bits (1192), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 227/349 (65%), Positives = 273/349 (78%), Gaps = 12/349 (3%)

Query: 27  TAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVW 86
           + V+SFGDG+ GALGLP+S  GVG DAYEPT +P LPSD+ SV AGHYHSLAVT+ G +W
Sbjct: 25  STVMSFGDGTHGALGLPSSAVGVGLDAYEPTPIPSLPSDIVSVHAGHYHSLAVTSQGHLW 84

Query: 87  AWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKS 146
           AWGRNNE QLG G   SR +WN+PK V GL+ V VCAA+ASGVVS+A+GDDGS+WVWGKS
Sbjct: 85  AWGRNNEAQLGPGFSSSRESWNEPKMVVGLENVKVCAAYASGVVSAAVGDDGSVWVWGKS 144

Query: 147 KRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGN 206
           KRGQLGLGK +TEA+ P+++EAL+GE + KVSFGWGHALAQT DGKLFGWGY ADGRIG 
Sbjct: 145 KRGQLGLGKGVTEAVAPAKLEALSGENVAKVSFGWGHALAQTVDGKLFGWGYLADGRIGK 204

Query: 207 LGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVE---G 263
           +G  LE SPLDS     S+         +E A K V +GMEKE  MP +WEP LVE   G
Sbjct: 205 MGNQLEESPLDSAAGTVSD---------LEVAGKRVLQGMEKENDMPTVWEPRLVEELRG 255

Query: 264 VEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFHPVSISSGLGH 323
           V V+DIACG DHSL+L RNG LLSCGS+ YGQLGR + D+G+FPVDI+F PVSI++GLGH
Sbjct: 256 VHVIDIACGLDHSLILCRNGALLSCGSDAYGQLGRARPDLGIFPVDISFKPVSIAAGLGH 315

Query: 324 SLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPDNVPLVVEGLEGES 372
           SLAICE+  S+ + G   I SWGWN+SSQLGR GP N+P +++ L+GE+
Sbjct: 316 SLAICELDESDSSVGTTNIASWGWNQSSQLGRTGPGNLPSLIDALDGEN 364



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 63/235 (26%), Positives = 100/235 (42%), Gaps = 58/235 (24%)

Query: 54  YEPTRVPGLPS-DVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGR-----GALESRATW 107
           +EP  V  L    V  ++ G  HSL +  NGA+ + G +   QLGR     G      ++
Sbjct: 245 WEPRLVEELRGVHVIDIACGLDHSLILCRNGALLSCGSDAYGQLGRARPDLGIFPVDISF 304

Query: 108 NDPKRVEGLDQ-VNVCAAFASGVVSSAIGDDG-SLWVWGKSKR-GQLGLGKDITEAIVPS 164
                  GL   + +C    S    S++G    + W W +S + G+ G G       +PS
Sbjct: 305 KPVSIAAGLGHSLAICELDES---DSSVGTTNIASWGWNQSSQLGRTGPGN------LPS 355

Query: 165 RVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSS 224
            ++AL GE  V VS G  H++A T  G+++ WG   +GR+G          L S++D   
Sbjct: 356 LIDALDGENPVSVSGGRVHSVALTAKGEMWVWGSGKNGRLG----------LASSVD--- 402

Query: 225 ESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVL 279
                                    ++ PI+ +    EG +++    GFDH+LVL
Sbjct: 403 -------------------------EFEPILLDTL--EGFQILQAVSGFDHNLVL 430


>gi|357483503|ref|XP_003612038.1| RCC1 and BTB domain-containing protein [Medicago truncatula]
 gi|355513373|gb|AES94996.1| RCC1 and BTB domain-containing protein [Medicago truncatula]
          Length = 442

 Score =  458 bits (1178), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 226/351 (64%), Positives = 274/351 (78%), Gaps = 6/351 (1%)

Query: 27  TAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVW 86
           + V+SFGDG+ GALGLPT+  G+G  AYEPT +P LPSD+ +V AGHYHSLA T+ G +W
Sbjct: 24  STVMSFGDGTHGALGLPTTTVGIGTHAYEPTPIPSLPSDILTVHAGHYHSLATTSQGHLW 83

Query: 87  AWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKS 146
           AWGRNNE QLGRG L SR TWN+P+RVEGL+ VNVC AFASGVVS  +GDDGS+WVWG S
Sbjct: 84  AWGRNNEAQLGRG-LSSRETWNEPRRVEGLEHVNVCGAFASGVVSCCVGDDGSVWVWGMS 142

Query: 147 KRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGN 206
           KRGQLGLGK +TEA+VPSRVEAL+ + +VKVSFGWGHALA T DGKLFGWGY ADGRIGN
Sbjct: 143 KRGQLGLGKHVTEAVVPSRVEALSRQNVVKVSFGWGHALALTVDGKLFGWGYYADGRIGN 202

Query: 207 LGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVE---G 263
           +G     S    +   +  ++ +I+SS +E A+K V +GM +E  MPIIWEP LVE   G
Sbjct: 203 MGNDHLESSTLDSSSSAFSNNTQITSSDLEVAEKKVLQGMAEETNMPIIWEPRLVEELRG 262

Query: 264 VEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFHPVSISSGLGH 323
           ++VVDIACG DHSLVL R+G LLS GSNVYGQLGR ++D+G FPVDI F PVS+++GLGH
Sbjct: 263 IQVVDIACGLDHSLVLCRDGALLSSGSNVYGQLGRAREDLGFFPVDIKFTPVSVAAGLGH 322

Query: 324 SLAICEV--RSSNVTGGARGIVSWGWNRSSQLGRMGPDNVPLVVEGLEGES 372
           SLAIC++    SNVT G   I SWGWN+SSQLGR GP  +P +++ L GE+
Sbjct: 323 SLAICQLDESDSNVTLGTTDIASWGWNQSSQLGRAGPAYLPALIDALAGEN 373



 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 63/238 (26%), Positives = 97/238 (40%), Gaps = 62/238 (26%)

Query: 54  YEPTRVPGLPS-DVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKR 112
           +EP  V  L    V  ++ G  HSL +  +GA+ + G N   QLGR   +      D K 
Sbjct: 252 WEPRLVEELRGIQVVDIACGLDHSLVLCRDGALLSSGSNVYGQLGRAREDLGFFPVDIK- 310

Query: 113 VEGLDQVNVCAAFASGVVSSAIGDDGS--------LWVWGKSKRGQLGLGKDITEAIVPS 164
                 V+V A     +    + +  S        +  WG ++  QLG       A +P+
Sbjct: 311 ---FTPVSVAAGLGHSLAICQLDESDSNVTLGTTDIASWGWNQSSQLGRAG---PAYLPA 364

Query: 165 RVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSS 224
            ++ALAGE  V VS G  H++A T  G+++ WG   +GR+G          L S++D   
Sbjct: 365 LIDALAGENPVSVSAGRAHSVALTSKGEMWVWGSGKNGRLG----------LSSSVDED- 413

Query: 225 ESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFL---VEGVEVVDIACGFDHSLVL 279
                                           EPF    +EG +++ +  GFDH+LVL
Sbjct: 414 --------------------------------EPFYLDSLEGFQILQVVSGFDHNLVL 439


>gi|356495400|ref|XP_003516566.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC2-like [Glycine
           max]
          Length = 432

 Score =  444 bits (1141), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 224/370 (60%), Positives = 289/370 (78%), Gaps = 18/370 (4%)

Query: 14  VLTSRIFMRSASG------TAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVT 67
           +L  ++ +++ SG      + V+ FGDGSQGA+G P    GVG DAYEPT V  LPSD+ 
Sbjct: 1   MLVRKLKLKAVSGVHLRWMSTVMCFGDGSQGAVGSPV---GVGLDAYEPTPVTALPSDIV 57

Query: 68  SVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGL-DQVNVCAAFA 126
           SV AGHYHSLA+T++G +WAWGRNNE QLGRG   SR +W++P+RV+GL + VNVC AFA
Sbjct: 58  SVHAGHYHSLALTSHGHLWAWGRNNEAQLGRGPSSSRESWHEPERVKGLLENVNVCGAFA 117

Query: 127 SGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALA 186
           SGVVS+A+GDDGS+WVWGKSKRGQLGLG+ ITEA+VP+++EAL+ E + KV+FGWGHALA
Sbjct: 118 SGVVSAALGDDGSVWVWGKSKRGQLGLGQHITEAVVPTKLEALSRENVAKVAFGWGHALA 177

Query: 187 QTEDGKLFGWGYSADGRIGNLG-KALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEG 245
           +T DGKLFGWGYSADGRIG +G    ++SPL+S     S ++ ++S+S +E A+K V +G
Sbjct: 178 RTSDGKLFGWGYSADGRIGKMGNNHFQTSPLESE----SPNNSQLSTSDLEAAEKRVLQG 233

Query: 246 MEKEKYMPIIWEPFLVE---GVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQD 302
           +E+E  MPI+WEP LVE   GV V+DIACG DHSLVL R+GVLLSCGSNVYGQLGR K D
Sbjct: 234 IEQENNMPIVWEPRLVEELRGVHVLDIACGLDHSLVLCRDGVLLSCGSNVYGQLGRAKID 293

Query: 303 MGMFPVDINFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPDNVP 362
           +G+FPV+++F PV I++GLGHSLAIC+   S+V+ G   I SWGWN SSQLGR G   +P
Sbjct: 294 LGVFPVEMSFSPVFIAAGLGHSLAICQFGESDVSVGTTNIASWGWNLSSQLGRPGDGKLP 353

Query: 363 LVVEGLEGES 372
            +++ L+GE+
Sbjct: 354 SLIDALDGEN 363



 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 56/174 (32%), Positives = 78/174 (44%), Gaps = 16/174 (9%)

Query: 54  YEPTRVPGLPS-DVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGR-----GALESRATW 107
           +EP  V  L    V  ++ G  HSL +  +G + + G N   QLGR     G      ++
Sbjct: 244 WEPRLVEELRGVHVLDIACGLDHSLVLCRDGVLLSCGSNVYGQLGRAKIDLGVFPVEMSF 303

Query: 108 NDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVE 167
           +      GL        F    VS    +  S   WG +   QLG   D     +PS ++
Sbjct: 304 SPVFIAAGLGHSLAICQFGESDVSVGTTNIAS---WGWNLSSQLGRPGD---GKLPSLID 357

Query: 168 ALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKA---LESSPLDS 218
           AL GE  V VS G  H+LA T  G+L+ WG    GR+G LG +   +E S +DS
Sbjct: 358 ALDGENPVSVSAGRAHSLALTSKGELWVWGSGKSGRLG-LGSSVNQVEPSCIDS 410


>gi|145334779|ref|NP_001078735.1| regulator of chromosome condensation repeat-containing protein
           [Arabidopsis thaliana]
 gi|8978337|dbj|BAA98190.1| regulator of chromosome condensation (cell cycle regulatory
           protein) like [Arabidopsis thaliana]
 gi|332008270|gb|AED95653.1| regulator of chromosome condensation repeat-containing protein
           [Arabidopsis thaliana]
          Length = 454

 Score =  427 bits (1097), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 228/375 (60%), Positives = 271/375 (72%), Gaps = 13/375 (3%)

Query: 2   RLLKSVVHNHVNVLTSRIFMRSASGTAVVSFGDGSQGALGLPTS-LTGVGGDAYEPTRVP 60
           R    V+ N   V+  +    S     V+SFGDG+ GALGL +S + G+G DAYEPT V 
Sbjct: 21  RFCTHVLFN--GVVRRQFTSTSGERRTVMSFGDGNLGALGLSSSSIPGMGMDAYEPTVVS 78

Query: 61  GLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVN 120
            LPSD++S+SAGHYHSLAVT++G +WAWGRN+E QLGR  ++SR + ++PKRVEGL+ VN
Sbjct: 79  NLPSDISSISAGHYHSLAVTSSGEIWAWGRNDEGQLGRIVIDSRDSRSEPKRVEGLENVN 138

Query: 121 VCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFG 180
           V AAFASGVVS+AIGDDGSLWVWG+SKRGQLGLG  I EA VPSRVE LA E +VKVS G
Sbjct: 139 VQAAFASGVVSAAIGDDGSLWVWGRSKRGQLGLGNGIIEARVPSRVENLAAEHVVKVSLG 198

Query: 181 WGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQK 240
           WGHALA T DGK+FGWGY ADGR+GN+G  LE+S LDS  D S +         +E A+K
Sbjct: 199 WGHALALTVDGKVFGWGYVADGRVGNVGLPLEASLLDSITDGSMKGHHAAGDLNLEAAEK 258

Query: 241 LVSEGMEKEKYMPIIWEPFLVEGV---EVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLG 297
            V E M KE  MPI WEP LVE     +V DIACG DHSL+L  +G LLS GSN+YGQLG
Sbjct: 259 KVVEAMSKENDMPIAWEPCLVEETCNEKVADIACGSDHSLILCHDGTLLSAGSNIYGQLG 318

Query: 298 REKQDMGMFPVDINFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMG 357
           R KQD+GM PVDI   P+SI++GLGHSLAIC         G R I+SWGWNRS QLGR  
Sbjct: 319 RSKQDLGMKPVDITESPISIAAGLGHSLAIC-------NRGERNILSWGWNRSRQLGRGK 371

Query: 358 PDNVPLVVEGLEGES 372
           P+N+P  VEG +GES
Sbjct: 372 PENLPREVEGFDGES 386



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 48/129 (37%), Positives = 67/129 (51%), Gaps = 13/129 (10%)

Query: 63  PSDVT----SVSAGHYHSLAVTNNGA--VWAWGRNNEVQLGRGALESRATWNDPKRVEGL 116
           P D+T    S++AG  HSLA+ N G   + +WG N   QLGRG  E     N P+ VEG 
Sbjct: 328 PVDITESPISIAAGLGHSLAICNRGERNILSWGWNRSRQLGRGKPE-----NLPREVEGF 382

Query: 117 DQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVK 176
           D  +  +  A  V S  + + G  WVWG  K G+LGLG    E   P  +E + G  +++
Sbjct: 383 DGESPASVSAGRVHSLCVTEKGEAWVWGCGKNGRLGLGSSSDEP-EPMLLEDVEG-CVLQ 440

Query: 177 VSFGWGHAL 185
              G+ H+L
Sbjct: 441 AVAGFDHSL 449



 Score = 55.5 bits (132), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 69/236 (29%), Positives = 101/236 (42%), Gaps = 66/236 (27%)

Query: 53  AYEPTRVPGLPSD-VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPK 111
           A+EP  V    ++ V  ++ G  HSL + ++G + + G N   QLGR            K
Sbjct: 273 AWEPCLVEETCNEKVADIACGSDHSLILCHDGTLLSAGSNIYGQLGR-----------SK 321

Query: 112 RVEGLDQVNVCAA---FASGVVSS-AIGDDG--SLWVWGKSKRGQLGLGKDITEAIVPSR 165
           +  G+  V++  +    A+G+  S AI + G  ++  WG ++  QLG GK      +P  
Sbjct: 322 QDLGMKPVDITESPISIAAGLGHSLAICNRGERNILSWGWNRSRQLGRGKPEN---LPRE 378

Query: 166 VEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSE 225
           VE   GE    VS G  H+L  TE G+ + WG   +GR+G LG               S 
Sbjct: 379 VEGFDGESPASVSAGRVHSLCVTEKGEAWVWGCGKNGRLG-LG---------------SS 422

Query: 226 SDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVE--VVDIACGFDHSLVL 279
           SD+                            EP L+E VE  V+    GFDHSL+L
Sbjct: 423 SDEP---------------------------EPMLLEDVEGCVLQAVAGFDHSLIL 451


>gi|297792001|ref|XP_002863885.1| regulator of chromosome condensation family protein [Arabidopsis
           lyrata subsp. lyrata]
 gi|297309720|gb|EFH40144.1| regulator of chromosome condensation family protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 454

 Score =  424 bits (1089), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 226/349 (64%), Positives = 264/349 (75%), Gaps = 13/349 (3%)

Query: 29  VVSFGDGSQGALGLPTS-LTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWA 87
           V+SFGDG+ GALGL +S + G+G DAYEPT V  LPSD++ +SAGHYHSLAVT  G +WA
Sbjct: 46  VMSFGDGNHGALGLSSSSIPGMGMDAYEPTVVSNLPSDISFISAGHYHSLAVTFGGEIWA 105

Query: 88  WGRNNEVQLGRGALES-RATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKS 146
           WGRN+E QLGR A++S R + ++PKRVEGLD VNV AAFASGVVS+AIGDDGSLWVWG+S
Sbjct: 106 WGRNDEGQLGRIAVDSGRDSRSEPKRVEGLDNVNVRAAFASGVVSAAIGDDGSLWVWGRS 165

Query: 147 KRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGN 206
           KRGQLGLGK I EA VPSRVE LA E +VKVS GWGHALA T DGK+FGWGY ADGR+GN
Sbjct: 166 KRGQLGLGKGIIEARVPSRVETLAAEHVVKVSLGWGHALALTVDGKVFGWGYVADGRVGN 225

Query: 207 LGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVE---G 263
           +G  LE+S LDS  D  S  DQ  +   +E A+K V E M KE  MPI WEP LVE    
Sbjct: 226 VGLPLEASLLDSITD-GSMKDQHAADLNLEAAEKKVVEAMSKENDMPIAWEPCLVEETRN 284

Query: 264 VEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFHPVSISSGLGH 323
           V+V DIACG DHSL+L  +G LLS GSN+YGQLGR KQD+GM PVDI   P+SI++GLGH
Sbjct: 285 VKVADIACGSDHSLILCHDGTLLSSGSNIYGQLGRSKQDLGMTPVDITESPISIAAGLGH 344

Query: 324 SLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPDNVPLVVEGLEGES 372
           SLAIC           R I+SWGWNRS QLGR  P+++P  VEG +GES
Sbjct: 345 SLAICNRDE-------RKILSWGWNRSRQLGRGKPEHLPREVEGFDGES 386



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 46/129 (35%), Positives = 66/129 (51%), Gaps = 13/129 (10%)

Query: 63  PSDVT----SVSAGHYHSLAVTNNG--AVWAWGRNNEVQLGRGALESRATWNDPKRVEGL 116
           P D+T    S++AG  HSLA+ N     + +WG N   QLGRG  E     + P+ VEG 
Sbjct: 328 PVDITESPISIAAGLGHSLAICNRDERKILSWGWNRSRQLGRGKPE-----HLPREVEGF 382

Query: 117 DQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVK 176
           D  +  +  A  V S  + + G  WVWG  K G+LGLG    E   P  +E + G  +++
Sbjct: 383 DGESPASVSAGRVHSLCVTEKGEAWVWGCGKNGRLGLGSSSDEP-EPMLLEDIEG-CVLQ 440

Query: 177 VSFGWGHAL 185
              G+ H+L
Sbjct: 441 TVAGFDHSL 449



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 65/238 (27%), Positives = 98/238 (41%), Gaps = 70/238 (29%)

Query: 53  AYEPTRVPGLPS-DVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPK 111
           A+EP  V    +  V  ++ G  HSL + ++G + + G N   QLGR            K
Sbjct: 273 AWEPCLVEETRNVKVADIACGSDHSLILCHDGTLLSSGSNIYGQLGR-----------SK 321

Query: 112 RVEGLDQVNVCAAFASGVVSSAIG--------DDGSLWVWGKSKRGQLGLGKDITEAIVP 163
           +  G+  V++  +  S  +++ +G        D+  +  WG ++  QLG GK      +P
Sbjct: 322 QDLGMTPVDITESPIS--IAAGLGHSLAICNRDERKILSWGWNRSRQLGRGK---PEHLP 376

Query: 164 SRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRS 223
             VE   GE    VS G  H+L  TE G+ + WG   +GR+G LG               
Sbjct: 377 REVEGFDGESPASVSAGRVHSLCVTEKGEAWVWGCGKNGRLG-LG--------------- 420

Query: 224 SESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVE--VVDIACGFDHSLVL 279
           S SD+                            EP L+E +E  V+    GFDHSL+L
Sbjct: 421 SSSDEP---------------------------EPMLLEDIEGCVLQTVAGFDHSLIL 451


>gi|30695429|ref|NP_199644.2| regulator of chromosome condensation repeat-containing protein
           [Arabidopsis thaliana]
 gi|26450138|dbj|BAC42188.1| regulator of chromosome condensation like [Arabidopsis thaliana]
 gi|28973207|gb|AAO63928.1| putative regulator of chromosome condensation (cell cycle
           regulatory protein) [Arabidopsis thaliana]
 gi|332008269|gb|AED95652.1| regulator of chromosome condensation repeat-containing protein
           [Arabidopsis thaliana]
          Length = 455

 Score =  422 bits (1086), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 228/376 (60%), Positives = 271/376 (72%), Gaps = 14/376 (3%)

Query: 2   RLLKSVVHNHVNVLTSRIFMRSASGTAVVSFGDGSQGALGLPTS-LTGVGGDAYEPTRVP 60
           R    V+ N   V+  +    S     V+SFGDG+ GALGL +S + G+G DAYEPT V 
Sbjct: 21  RFCTHVLFN--GVVRRQFTSTSGERRTVMSFGDGNLGALGLSSSSIPGMGMDAYEPTVVS 78

Query: 61  GLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALES-RATWNDPKRVEGLDQV 119
            LPSD++S+SAGHYHSLAVT++G +WAWGRN+E QLGR  ++S R + ++PKRVEGL+ V
Sbjct: 79  NLPSDISSISAGHYHSLAVTSSGEIWAWGRNDEGQLGRIVIDSSRDSRSEPKRVEGLENV 138

Query: 120 NVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSF 179
           NV AAFASGVVS+AIGDDGSLWVWG+SKRGQLGLG  I EA VPSRVE LA E +VKVS 
Sbjct: 139 NVQAAFASGVVSAAIGDDGSLWVWGRSKRGQLGLGNGIIEARVPSRVENLAAEHVVKVSL 198

Query: 180 GWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQ 239
           GWGHALA T DGK+FGWGY ADGR+GN+G  LE+S LDS  D S +         +E A+
Sbjct: 199 GWGHALALTVDGKVFGWGYVADGRVGNVGLPLEASLLDSITDGSMKGHHAAGDLNLEAAE 258

Query: 240 KLVSEGMEKEKYMPIIWEPFLVEGV---EVVDIACGFDHSLVLGRNGVLLSCGSNVYGQL 296
           K V E M KE  MPI WEP LVE     +V DIACG DHSL+L  +G LLS GSN+YGQL
Sbjct: 259 KKVVEAMSKENDMPIAWEPCLVEETCNEKVADIACGSDHSLILCHDGTLLSAGSNIYGQL 318

Query: 297 GREKQDMGMFPVDINFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRM 356
           GR KQD+GM PVDI   P+SI++GLGHSLAIC         G R I+SWGWNRS QLGR 
Sbjct: 319 GRSKQDLGMKPVDITESPISIAAGLGHSLAIC-------NRGERNILSWGWNRSRQLGRG 371

Query: 357 GPDNVPLVVEGLEGES 372
            P+N+P  VEG +GES
Sbjct: 372 KPENLPREVEGFDGES 387



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 48/129 (37%), Positives = 67/129 (51%), Gaps = 13/129 (10%)

Query: 63  PSDVT----SVSAGHYHSLAVTNNGA--VWAWGRNNEVQLGRGALESRATWNDPKRVEGL 116
           P D+T    S++AG  HSLA+ N G   + +WG N   QLGRG  E     N P+ VEG 
Sbjct: 329 PVDITESPISIAAGLGHSLAICNRGERNILSWGWNRSRQLGRGKPE-----NLPREVEGF 383

Query: 117 DQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVK 176
           D  +  +  A  V S  + + G  WVWG  K G+LGLG    E   P  +E + G  +++
Sbjct: 384 DGESPASVSAGRVHSLCVTEKGEAWVWGCGKNGRLGLGSSSDEP-EPMLLEDVEG-CVLQ 441

Query: 177 VSFGWGHAL 185
              G+ H+L
Sbjct: 442 AVAGFDHSL 450



 Score = 55.5 bits (132), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 69/236 (29%), Positives = 101/236 (42%), Gaps = 66/236 (27%)

Query: 53  AYEPTRVPGLPSD-VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPK 111
           A+EP  V    ++ V  ++ G  HSL + ++G + + G N   QLGR            K
Sbjct: 274 AWEPCLVEETCNEKVADIACGSDHSLILCHDGTLLSAGSNIYGQLGR-----------SK 322

Query: 112 RVEGLDQVNVCAA---FASGVVSS-AIGDDG--SLWVWGKSKRGQLGLGKDITEAIVPSR 165
           +  G+  V++  +    A+G+  S AI + G  ++  WG ++  QLG GK      +P  
Sbjct: 323 QDLGMKPVDITESPISIAAGLGHSLAICNRGERNILSWGWNRSRQLGRGKPEN---LPRE 379

Query: 166 VEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSE 225
           VE   GE    VS G  H+L  TE G+ + WG   +GR+G LG               S 
Sbjct: 380 VEGFDGESPASVSAGRVHSLCVTEKGEAWVWGCGKNGRLG-LG---------------SS 423

Query: 226 SDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVE--VVDIACGFDHSLVL 279
           SD+                            EP L+E VE  V+    GFDHSL+L
Sbjct: 424 SDEP---------------------------EPMLLEDVEGCVLQAVAGFDHSLIL 452


>gi|147803042|emb|CAN68367.1| hypothetical protein VITISV_018178 [Vitis vinifera]
          Length = 458

 Score =  369 bits (948), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 188/275 (68%), Positives = 218/275 (79%), Gaps = 9/275 (3%)

Query: 101 LESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEA 160
           + +R +WN P RVEGL+QV V AAFASGV+S+AIGDDGSLWVWGKSK GQLGLGK I+E 
Sbjct: 121 VNTRDSWNVPTRVEGLNQVKVRAAFASGVISTAIGDDGSLWVWGKSKHGQLGLGKGISET 180

Query: 161 IVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNI 220
           +VPSRVEALA EKIVKVS GWGHALAQTEDGKLFGWGYSADGR+G +GKALE  PL+S  
Sbjct: 181 VVPSRVEALAREKIVKVSLGWGHALAQTEDGKLFGWGYSADGRLGQVGKALEVFPLNSVA 240

Query: 221 DRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVE---GVEVVDIACGFDHSL 277
           DR      E+SSS +E A+K+V +G+EKEK MPIIWEP L+E   GV +VD+ACG DHSL
Sbjct: 241 DR------ELSSSKLEVAEKMVLKGIEKEKNMPIIWEPSLIEEENGVGIVDVACGLDHSL 294

Query: 278 VLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFHPVSISSGLGHSLAICEVRSSNVTG 337
           VL  NG LLS G N+YGQLGR  QD GM PV  +F P+SISSGLGHSLAIC+V SS   G
Sbjct: 295 VLCGNGNLLSGGRNIYGQLGRVAQDYGMVPVTTSFIPISISSGLGHSLAICQVESSEAIG 354

Query: 338 GARGIVSWGWNRSSQLGRMGPDNVPLVVEGLEGES 372
           GA  I+SWGWN+  QLGR GP + P+ V+GL GE+
Sbjct: 355 GATSIISWGWNQFFQLGRAGPGSCPMAVQGLAGET 389



 Score = 58.2 bits (139), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 66/223 (29%), Positives = 95/223 (42%), Gaps = 53/223 (23%)

Query: 66  VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGR-----GALESRATWNDPKRVEGLDQ-V 119
           +  V+ G  HSL +  NG + + GRN   QLGR     G +    ++       GL   +
Sbjct: 283 IVDVACGLDHSLVLCGNGNLLSGGRNIYGQLGRVAQDYGMVPVTTSFIPISISSGLGHSL 342

Query: 120 NVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSF 179
            +C   +S     AIG   S+  WG ++  QLG     +    P  V+ LAGE  V VS 
Sbjct: 343 AICQVESS----EAIGGATSIISWGWNQFFQLGRAGPGS---CPMAVQGLAGETPVAVSG 395

Query: 180 GWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQ 239
           G  H++A T  G+++  GY   GR+G          L S+ D       E+  S +E   
Sbjct: 396 GRAHSIALTSKGEVWVXGYGKSGRLG----------LGSSTD-------EVEPSLLE--- 435

Query: 240 KLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRN 282
                                +EG EV+ +A GFDH+LVL  N
Sbjct: 436 --------------------YLEGSEVLQVASGFDHNLVLVAN 458



 Score = 51.6 bits (122), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 76/313 (24%), Positives = 121/313 (38%), Gaps = 80/313 (25%)

Query: 56  PTRVPGLPS-DVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVE 114
           PTRV GL    V +  A    S A+ ++G++W WG++   QLG G   S      P RVE
Sbjct: 130 PTRVEGLNQVKVRAAFASGVISTAIGDDGSLWVWGKSKHGQLGLGKGISETV--VPSRVE 187

Query: 115 GLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLG-LGK------------------ 155
            L +  +         + A  +DG L+ WG S  G+LG +GK                  
Sbjct: 188 ALAREKIVKVSLGWGHALAQTEDGKLFGWGYSADGRLGQVGKALEVFPLNSVADRELSSS 247

Query: 156 --DITEAIV---------------PSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGY 198
             ++ E +V               PS +E   G  IV V+ G  H+L    +G L   G 
Sbjct: 248 KLEVAEKMVLKGIEKEKNMPIIWEPSLIEEENGVGIVDVACGLDHSLVLCGNGNLLSGGR 307

Query: 199 SADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEP 258
           +  G++G + +     P+ ++                               ++PI    
Sbjct: 308 NIYGQLGRVAQDYGMVPVTTS-------------------------------FIPISISS 336

Query: 259 FLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDIN----FHP 314
            L   + +    C  + S  +G    ++S G N + QLGR     G  P+ +       P
Sbjct: 337 GLGHSLAI----CQVESSEAIGGATSIISWGWNQFFQLGRAGP--GSCPMAVQGLAGETP 390

Query: 315 VSISSGLGHSLAI 327
           V++S G  HS+A+
Sbjct: 391 VAVSGGRAHSIAL 403


>gi|242064384|ref|XP_002453481.1| hypothetical protein SORBIDRAFT_04g006650 [Sorghum bicolor]
 gi|241933312|gb|EES06457.1| hypothetical protein SORBIDRAFT_04g006650 [Sorghum bicolor]
          Length = 442

 Score =  365 bits (936), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 189/379 (49%), Positives = 250/379 (65%), Gaps = 18/379 (4%)

Query: 4   LKSVVHNHVNVLTSRIFMRSASGT--------AVVSFGDGSQGALGLPTSLTGVGGDAYE 55
           ++S++        SR F  + +G+         V  FGD S GA+G P        D Y 
Sbjct: 1   MRSLLLPRTCAFASRRFFSALAGSRAGAPCAGVVYGFGDNSHGAVGQPPP----AADTYV 56

Query: 56  PTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEG 115
           PT VP LP  +++V+AGHYHSLAV+  G VWAWGRN+E QLGRG    R TW++ + V G
Sbjct: 57  PTPVPSLPPSMSAVAAGHYHSLAVSAAGEVWAWGRNDEGQLGRGLHSPRNTWSNAELVRG 116

Query: 116 LDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIV 175
           L+ V V A  ASGVVS+AIG DGSLWVWG+SKRGQLGLGKDI EA  PS+VEALA   IV
Sbjct: 117 LENVQVQAVSASGVVSAAIGSDGSLWVWGRSKRGQLGLGKDIVEAAAPSKVEALASYDIV 176

Query: 176 KVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTI 235
           KVSFGWGHA+A T+DGKLFGWGYS +GR+G +G++  +   +  I + ++   +  SS +
Sbjct: 177 KVSFGWGHAMALTKDGKLFGWGYSENGRLGEMGQSTRAPSAEEYIGKMAD---KYYSSML 233

Query: 236 EKAQKLVSEGMEKEKYMPIIWEPFLVEGV---EVVDIACGFDHSLVLGRNGVLLSCGSNV 292
           E  +K+V E +  E  MPIIWEPFLV  V   EV D++CG DHSL+L  +G++LS G N 
Sbjct: 234 EAVEKMVEEKIRSEDNMPIIWEPFLVHEVSHLEVSDVSCGLDHSLILCSDGIVLSGGDNT 293

Query: 293 YGQLGREKQDMGMFPVDINFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQ 352
           YGQLGR+     + PV +++ P S+S+ +GHSLA+C   +    G   G++SWGWN SSQ
Sbjct: 294 YGQLGRKAGPPKLLPVGMSYKPFSMSASVGHSLALCHTSTEGTDGVETGLLSWGWNCSSQ 353

Query: 353 LGRMGPDNVPLVVEGLEGE 371
           LGR G +++P +V+ L  E
Sbjct: 354 LGRPGQEDIPALVDCLSRE 372



 Score = 58.5 bits (140), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 55/169 (32%), Positives = 80/169 (47%), Gaps = 29/169 (17%)

Query: 29  VVSFGDGSQGALGL---PTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGA- 84
           V+S GD + G LG    P  L  VG  +Y+P           S+SA   HSLA+ +    
Sbjct: 286 VLSGGDNTYGQLGRKAGPPKLLPVG-MSYKPF----------SMSASVGHSLALCHTSTE 334

Query: 85  --------VWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGD 136
                   + +WG N   QLGR   E     + P  V+ L +  + +A A  V S ++  
Sbjct: 335 GTDGVETGLLSWGWNCSSQLGRPGQE-----DIPALVDCLSRERLVSASAGRVHSVSLTS 389

Query: 137 DGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHAL 185
            G +W WG  + G+LGLG  I EA  P  V+ L G ++++V+ G  H L
Sbjct: 390 KGEVWTWGSGRNGRLGLGSSIDEA-EPCLVDTLEGVEVLQVAAGMDHNL 437



 Score = 54.7 bits (130), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 64/227 (28%), Positives = 97/227 (42%), Gaps = 65/227 (28%)

Query: 65  DVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVE---GLDQVNV 121
           +V+ VS G  HSL + ++G V + G N   QLGR A         PK +         ++
Sbjct: 266 EVSDVSCGLDHSLILCSDGIVLSGGDNTYGQLGRKA-------GPPKLLPVGMSYKPFSM 318

Query: 122 CAAFASGVV---SSAIGDDG---SLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIV 175
            A+    +    +S  G DG    L  WG +   QLG      +  +P+ V+ L+ E++V
Sbjct: 319 SASVGHSLALCHTSTEGTDGVETGLLSWGWNCSSQLG---RPGQEDIPALVDCLSRERLV 375

Query: 176 KVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTI 235
             S G  H+++ T  G+++ WG   +GR+G          L S+ID +            
Sbjct: 376 SASAGRVHSVSLTSKGEVWTWGSGRNGRLG----------LGSSIDEA------------ 413

Query: 236 EKAQKLVSEGMEKEKYMPIIWEPFLV---EGVEVVDIACGFDHSLVL 279
                                EP LV   EGVEV+ +A G DH+LVL
Sbjct: 414 ---------------------EPCLVDTLEGVEVLQVAAGMDHNLVL 439


>gi|413926238|gb|AFW66170.1| putative regulator of chromosome condensation (RCC1) family protein
           [Zea mays]
          Length = 442

 Score =  358 bits (918), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 187/379 (49%), Positives = 251/379 (66%), Gaps = 18/379 (4%)

Query: 4   LKSVVHNHVNVLTSRIFMRSASGT--------AVVSFGDGSQGALGLPTSLTGVGGDAYE 55
           ++S++        SR F+ + +G+         V  FGD S GA+G P         AY 
Sbjct: 1   MRSLLLPRRCAFASRRFLSALAGSGARAPCAGVVYGFGDNSHGAVGQPPP----AAHAYV 56

Query: 56  PTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEG 115
           PT VP LP  V++V+AGHYHSLAV+  G VWAWGRN+E QLGRG    R TW++ + V G
Sbjct: 57  PTPVPSLPPSVSAVAAGHYHSLAVSAAGEVWAWGRNDEGQLGRGLHSPRNTWSNAELVRG 116

Query: 116 LDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIV 175
           L+ V V A  ASGVVS+AIG DGSLWVWG+SKRGQLGLGKDI EA VPS+V+ALA   IV
Sbjct: 117 LENVQVQAVSASGVVSAAIGSDGSLWVWGRSKRGQLGLGKDIVEAAVPSKVKALASYDIV 176

Query: 176 KVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTI 235
           KVSFGWGH++A T+DGKLFGWGYS +GR+G +G++  +   +  I ++ +   + SS  +
Sbjct: 177 KVSFGWGHSMALTKDGKLFGWGYSENGRLGEMGQSTRALSAEEYIGKTVD---KYSSVML 233

Query: 236 EKAQKLVSEGMEKEKYMPIIWEPFLVEGV---EVVDIACGFDHSLVLGRNGVLLSCGSNV 292
           E  +K+V E ++ E  MPIIWEP LV  V   EV D++CG DHSL+L  +G++LS G N 
Sbjct: 234 EAVEKMVEEKIQSEDDMPIIWEPSLVHEVSRLEVSDVSCGLDHSLILCSDGIVLSGGDNT 293

Query: 293 YGQLGREKQDMGMFPVDINFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQ 352
           YGQLGR+     + PV +++ P S+S+ +GHSLA+C   +    G   G++SWGWN SSQ
Sbjct: 294 YGQLGRKAGPPELLPVGMSYRPFSMSASVGHSLALCYTTTEGTAGVETGLLSWGWNCSSQ 353

Query: 353 LGRMGPDNVPLVVEGLEGE 371
           LGR   +++P +V+ L  E
Sbjct: 354 LGRSSQEDIPALVDSLSRE 372



 Score = 62.0 bits (149), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 55/167 (32%), Positives = 78/167 (46%), Gaps = 25/167 (14%)

Query: 29  VVSFGDGSQGALGL---PTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNN--- 82
           V+S GD + G LG    P  L  VG  +Y P  +        S S GH  +L  T     
Sbjct: 286 VLSGGDNTYGQLGRKAGPPELLPVG-MSYRPFSM--------SASVGHSLALCYTTTEGT 336

Query: 83  ----GAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDG 138
                 + +WG N   QLGR + E     + P  V+ L +  + +A A  V S A+   G
Sbjct: 337 AGVETGLLSWGWNCSSQLGRSSQE-----DIPALVDSLSRERLVSASAGRVHSVALTSKG 391

Query: 139 SLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHAL 185
            +W WG  + G+LGLG  I EA  P  V+ L G ++++V+ G  H L
Sbjct: 392 EVWTWGSGRNGRLGLGSSIDEA-APCLVDTLEGVEVLQVAAGMDHNL 437



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 61/217 (28%), Positives = 92/217 (42%), Gaps = 45/217 (20%)

Query: 65  DVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGR--GALESRATWNDPKRVEGLDQVNVC 122
           +V+ VS G  HSL + ++G V + G N   QLGR  G  E        +       V   
Sbjct: 266 EVSDVSCGLDHSLILCSDGIVLSGGDNTYGQLGRKAGPPELLPVGMSYRPFSMSASVGHS 325

Query: 123 AAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWG 182
            A          G +  L  WG +   QLG     ++  +P+ V++L+ E++V  S G  
Sbjct: 326 LALCYTTTEGTAGVETGLLSWGWNCSSQLGRS---SQEDIPALVDSLSRERLVSASAGRV 382

Query: 183 HALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLV 242
           H++A T  G+++ WG   +GR+G          L S+ID              E A  LV
Sbjct: 383 HSVALTSKGEVWTWGSGRNGRLG----------LGSSID--------------EAAPCLV 418

Query: 243 SEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVL 279
                             +EGVEV+ +A G DH+L+L
Sbjct: 419 DT----------------LEGVEVLQVAAGMDHNLLL 439


>gi|125538482|gb|EAY84877.1| hypothetical protein OsI_06242 [Oryza sativa Indica Group]
          Length = 445

 Score =  355 bits (910), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 188/347 (54%), Positives = 236/347 (68%), Gaps = 10/347 (2%)

Query: 28  AVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWA 87
           AV +FGD S GA            D Y PT VP LP+ V +V+AGHYHSLAV+  G VWA
Sbjct: 36  AVYAFGDNSHGA----AGQPAPAADVYVPTPVPSLPTSVAAVAAGHYHSLAVSAEGEVWA 91

Query: 88  WGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSK 147
           WGRN+E QLGRG    R TW+ P++V GL+ V V A  A GVVS+AIG DGSLWVWG+S+
Sbjct: 92  WGRNDEGQLGRGHHAPRNTWSKPEKVRGLENVQVRAVSACGVVSAAIGCDGSLWVWGRSR 151

Query: 148 RGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNL 207
           RGQLGLGKDI EA VPSRVEALA   IVKVSFGWGHA+A T+DG L GWGYS +GR+G +
Sbjct: 152 RGQLGLGKDIVEAAVPSRVEALANYDIVKVSFGWGHAMALTKDGGLLGWGYSENGRLGEI 211

Query: 208 GKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVE---GV 264
           G+  ++S     + ++ +   + SSS +E  +K+V E +  E  MPIIWEP LV     V
Sbjct: 212 GQITQASSAKELLGKTVD---KYSSSMLEAVEKMVEEKIRSEDNMPIIWEPSLVHEVCHV 268

Query: 265 EVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFHPVSISSGLGHS 324
           EV D++CG DHSLVL  +G++LS G N YGQLGR+       PVDI+  P S+S+ +GHS
Sbjct: 269 EVSDVSCGLDHSLVLCSDGIVLSGGDNTYGQLGRKSAWSKFLPVDISHSPFSVSASVGHS 328

Query: 325 LAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPDNVPLVVEGLEGE 371
           LA C + +        G++SWGWN SSQLGR G ++VP +V+GL GE
Sbjct: 329 LATCIISTEGDDHAETGVLSWGWNCSSQLGRPGKEDVPALVDGLNGE 375



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 65/222 (29%), Positives = 99/222 (44%), Gaps = 55/222 (24%)

Query: 65  DVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAA 124
           +V+ VS G  HSL + ++G V + G N   QLGR +  S+    D          +V  +
Sbjct: 269 EVSDVSCGLDHSLVLCSDGIVLSGGDNTYGQLGRKSAWSKFLPVDISHSPFSVSASVGHS 328

Query: 125 FASGVVSSAIGDDGS---LWVWGKSKRGQLGL-GKDITEAIVPSRVEALAGEKIVKVSFG 180
            A+ ++S+  GDD +   +  WG +   QLG  GK+     VP+ V+ L GE+ V  S G
Sbjct: 329 LATCIISTE-GDDHAETGVLSWGWNCSSQLGRPGKED----VPALVDGLNGERPVSASAG 383

Query: 181 WGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQK 240
             H++A T  G+++ WG   +GR+G          L S++D                   
Sbjct: 384 RVHSVALTSKGEVWAWGSGRNGRLG----------LGSSMDEP----------------- 416

Query: 241 LVSEGMEKEKYMPIIWEPFLV---EGVEVVDIACGFDHSLVL 279
                           EPFL+   EG EV  +A G DH+L+L
Sbjct: 417 ----------------EPFLIDTLEGAEVSQVAAGMDHTLLL 442



 Score = 55.8 bits (133), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 54/170 (31%), Positives = 79/170 (46%), Gaps = 31/170 (18%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVT----SVSAGHYHSLA---VTN 81
           V+S GD + G LG  ++ +              LP D++    SVSA   HSLA   ++ 
Sbjct: 289 VLSGGDNTYGQLGRKSAWSKF------------LPVDISHSPFSVSASVGHSLATCIIST 336

Query: 82  NG------AVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIG 135
            G       V +WG N   QLGR   E     + P  V+GL+     +A A  V S A+ 
Sbjct: 337 EGDDHAETGVLSWGWNCSSQLGRPGKE-----DVPALVDGLNGERPVSASAGRVHSVALT 391

Query: 136 DDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHAL 185
             G +W WG  + G+LGLG  + E   P  ++ L G ++ +V+ G  H L
Sbjct: 392 SKGEVWAWGSGRNGRLGLGSSMDEP-EPFLIDTLEGAEVSQVAAGMDHTL 440


>gi|357139002|ref|XP_003571075.1| PREDICTED: E3 ubiquitin-protein ligase HERC2-like [Brachypodium
           distachyon]
          Length = 436

 Score =  353 bits (906), Expect = 8e-95,   Method: Compositional matrix adjust.
 Identities = 186/347 (53%), Positives = 235/347 (67%), Gaps = 13/347 (3%)

Query: 28  AVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWA 87
           AV  FGD S GA+G P        D Y PT VP LP  V +V+AGHYHSLAV+  G VWA
Sbjct: 30  AVYGFGDNSHGAVGQPAP----AADVYVPTPVPSLPPSVAAVAAGHYHSLAVSAVGEVWA 85

Query: 88  WGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSK 147
           WGRN E QLGRG    R TW+ P++V GL+ V V +  ASGVVS+AIG DGSLWVWG+SK
Sbjct: 86  WGRNEEGQLGRGLNAPRNTWSKPEQVRGLENVQVRSVSASGVVSAAIGCDGSLWVWGRSK 145

Query: 148 RGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNL 207
           RGQLGLGKDI EA VP RV+ALA   +VKVSFGWGHA+A T+DG LFGWGYS +GR+G +
Sbjct: 146 RGQLGLGKDIVEATVPCRVQALASYDVVKVSFGWGHAMALTKDGGLFGWGYSENGRLGVM 205

Query: 208 GKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGV--- 264
           G++ ++      I +  +   + SSS ++  +K+V+E +  E  MPIIWEP LV  V   
Sbjct: 206 GRSTQAPSPQEYIGKMGD---KYSSSMMDAVEKMVAEKIRSEDNMPIIWEPSLVHEVCHL 262

Query: 265 EVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFHPVSISSGLGHS 324
           EV D++CG DHSLVL  N  +LS G N YGQLGR+     + PVDI+  P S+S+  GHS
Sbjct: 263 EVSDVSCGLDHSLVLCSNCTVLSGGDNTYGQLGRKAGLPKLLPVDISCSPFSVSASAGHS 322

Query: 325 LAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPDNVPLVVEGLEGE 371
           LA+C   + NV      ++SWGWN SSQLGR G +++P +++ L GE
Sbjct: 323 LALCHTSTDNVE---TRVLSWGWNCSSQLGRPGQEDIPALIDYLVGE 366



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 64/233 (27%), Positives = 97/233 (41%), Gaps = 80/233 (34%)

Query: 65  DVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNV-CA 123
           +V+ VS G  HSL + +N  V + G N   QLGR A         PK    L  V++ C+
Sbjct: 263 EVSDVSCGLDHSLVLCSNCTVLSGGDNTYGQLGRKA-------GLPK----LLPVDISCS 311

Query: 124 AFASGVVSSAIGDDGSL--------------WVWGKSKRGQLGLGKDITEAIVPSRVEAL 169
            F+   VS++ G   +L              W W  S +    LG+   E I P+ ++ L
Sbjct: 312 PFS---VSASAGHSLALCHTSTDNVETRVLSWGWNCSSQ----LGRPGQEDI-PALIDYL 363

Query: 170 AGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQE 229
            GEK V  + G  H++    +G+ + WG   +GR+G          L S++D +      
Sbjct: 364 VGEKPVSAAAGRVHSVVLMSNGEAWAWGSGRNGRLG----------LGSSMDEA------ 407

Query: 230 ISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLV---EGVEVVDIACGFDHSLVL 279
                                      EP L+   EGVEV+ +A G DH+L+L
Sbjct: 408 ---------------------------EPCLIDTLEGVEVLQVATGMDHNLIL 433


>gi|356540769|ref|XP_003538857.1| PREDICTED: LOW QUALITY PROTEIN: probable E3 ubiquitin-protein
           ligase HERC4-like [Glycine max]
          Length = 374

 Score =  324 bits (830), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 169/291 (58%), Positives = 215/291 (73%), Gaps = 16/291 (5%)

Query: 48  GVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATW 107
           GV  DAYEPT V  LPS + SV AGHYHSL        WAWGRNN+ QL RG   SR +W
Sbjct: 21  GVRIDAYEPTPVSALPSHILSVHAGHYHSL--------WAWGRNNQAQLARGP-SSRESW 71

Query: 108 NDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVE 167
           ++P+RV+GL+ +NVC +F  G+ S  +GDDGS+ V GKSKRGQLGLG++IT+++VP+++ 
Sbjct: 72  HEPERVKGLETLNVCGSFGWGIESIRLGDDGSVXVSGKSKRGQLGLGQNITKSVVPTKLV 131

Query: 168 ALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESD 227
           A++G  + KV+FGWGHALA+T DGKLFGWGYSADGRI   GK  E S  D ++     S 
Sbjct: 132 AISGXNVAKVAFGWGHALARTADGKLFGWGYSADGRI---GKMXEXSLPDISVGIRV-SK 187

Query: 228 QEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVE---GVEVVDIACGFDHSLVLGRNGV 284
              + + +E A+K V +GME+E  MPI+WEP LVE   GV V+DIACG DHSL+L R+GV
Sbjct: 188 YLTALADLEAAEKRVLQGMEQENNMPIVWEPRLVEELHGVHVLDIACGLDHSLILCRDGV 247

Query: 285 LLSCGSNVYGQLGREKQDMGMFPVDINFHPVSISSGLGHSLAICEVRSSNV 335
           LLSCGSNVYGQLGR K D+G+FPV+++F PV I+ GLGHSLAICE+  S +
Sbjct: 248 LLSCGSNVYGQLGRAKTDLGIFPVEMSFSPVFIAXGLGHSLAICELVPSLI 298



 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 87/321 (27%), Positives = 123/321 (38%), Gaps = 118/321 (36%)

Query: 26  GTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLP-SDVTSVSAGHYHSLAVTNNGA 84
           G+  VS G   +G LGL  ++T     +  PT++  +   +V  V+ G  H+LA T +G 
Sbjct: 102 GSVXVS-GKSKRGQLGLGQNIT----KSVVPTKLVAISGXNVAKVAFGWGHALARTADGK 156

Query: 85  VWAWGRNNEVQLGR-------------------------GALESRA------------TW 107
           ++ WG + + ++G+                          A E R              W
Sbjct: 157 LFGWGYSADGRIGKMXEXSLPDISVGIRVSKYLTALADLEAAEKRVLQGMEQENNMPIVW 216

Query: 108 NDPKRVEGLDQVNVCAAFASGVVSSAI-GDDGSLWVWGKSKRGQLGLGKD---------- 156
            +P+ VE L  V+V    A G+  S I   DG L   G +  GQLG  K           
Sbjct: 217 -EPRLVEELHGVHVLD-IACGLDHSLILCRDGVLLSCGSNVYGQLGRAKTDLGIFPVEMS 274

Query: 157 ---------------ITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSAD 201
                          I E +VPS ++AL GE  V VS G  H+LA T  GKL+ WG    
Sbjct: 275 FSPVFIAXGLGHSLAICE-LVPSLIDALDGENPVSVSEGRAHSLALTSKGKLWVWGSGTS 333

Query: 202 GRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLV 261
           GR+G LG               S +DQ                            EPF V
Sbjct: 334 GRLG-LG---------------SSADQV---------------------------EPFCV 350

Query: 262 EGVE---VVDIACGFDHSLVL 279
           + +E   ++    GFDH+LVL
Sbjct: 351 DSLERFQILQALSGFDHNLVL 371


>gi|125581167|gb|EAZ22098.1| hypothetical protein OsJ_05757 [Oryza sativa Japonica Group]
          Length = 406

 Score =  300 bits (767), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 168/347 (48%), Positives = 211/347 (60%), Gaps = 48/347 (13%)

Query: 28  AVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWA 87
           AV +FGD S GA            D Y PT VP LP+ V +V+AGHY+SLAV+  G VWA
Sbjct: 35  AVYAFGDNSHGA----AGQPAPAADVYVPTPVPSLPTSVAAVAAGHYNSLAVSAEGEVWA 90

Query: 88  WGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSK 147
           WGRN+E                                      +AIG DGSLWVWG+SK
Sbjct: 91  WGRNDE--------------------------------------AAIGCDGSLWVWGRSK 112

Query: 148 RGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNL 207
           RGQLGLGKDI EA VPSRVEALA   IVKVSFGWGHA+A T+DG L GWGYS +GR+G +
Sbjct: 113 RGQLGLGKDIVEAAVPSRVEALANYDIVKVSFGWGHAMALTKDGGLLGWGYSENGRLGEI 172

Query: 208 GKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVE---GV 264
           G   ++S     + ++ +   + SSS +E  +K+V E +  E  MPIIWEP LV     V
Sbjct: 173 GHITQASSAKELLGKTVD---KYSSSMLEAVEKMVEEKIRSEDNMPIIWEPSLVHEVCHV 229

Query: 265 EVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFHPVSISSGLGHS 324
           EV D++CG DHSLVL  +G++LS G N YGQLGR+       PVDI+  P S+S+ +GHS
Sbjct: 230 EVSDVSCGLDHSLVLCSDGIVLSGGDNTYGQLGRKSAWSKFLPVDISHSPFSVSASVGHS 289

Query: 325 LAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPDNVPLVVEGLEGE 371
           LA C + +        G++SWGWN SSQLGR G ++VP +V+GL GE
Sbjct: 290 LATCIISTEGDDHAETGVLSWGWNCSSQLGRPGKEDVPALVDGLNGE 336


>gi|168058364|ref|XP_001781179.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162667416|gb|EDQ54047.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 466

 Score =  281 bits (719), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 167/369 (45%), Positives = 217/369 (58%), Gaps = 35/369 (9%)

Query: 24  ASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNG 83
           A  T V+SFGDGS GALG        GGDAYEP  + GLP DV SV AGHYHS+AV   G
Sbjct: 43  AKKTRVLSFGDGSHGALGHTDCF---GGDAYEPREINGLPEDVVSVGAGHYHSMAVAQTG 99

Query: 84  AVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVW 143
            +WAWGRN E QLG     +R  W+ P+RV GL+ V V +A  SGVVS AI  DGSLW W
Sbjct: 100 ELWAWGRNLEGQLGERDGNTREKWHQPQRVRGLESVEVVSARGSGVVSMAIARDGSLWTW 159

Query: 144 GKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGR 203
           GKSKRGQLGLG  I  A  P RVEAL G+++V+V+ GWGHALA+T +G ++ WGY+A+GR
Sbjct: 160 GKSKRGQLGLGTKIMYAQTPKRVEALVGQQVVQVALGWGHALARTAEGHVYSWGYAANGR 219

Query: 204 IGNLGKALESSPLDSNIDRSSESD-QEISSSTIEK-AQKLVSEGMEKEKYMPIIWEPFLV 261
           +G   +  +S   ++++ ++S +    + + +IE+ A + V E MEKEK   + WEP  +
Sbjct: 220 LGF--QLSDSESAETSVKKTSPTAIARVDNESIEEAAYRQVLEDMEKEKSPVLAWEPVRI 277

Query: 262 EGV---EVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQ----DMGMFPVDINFHP 314
             +    V +I+CG DHSL L   G L S G N  GQLGR          +F V+ +   
Sbjct: 278 NSLCSQHVTEISCGMDHSLTLNEKGELCSFGDNSLGQLGRSTAISAVQSSIFAVENSEDH 337

Query: 315 VS----------ISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGR--MGPDNVP 362
           V           + +GLGHSLA+    S         I SWGWN   QLGR      ++P
Sbjct: 338 VQGLIRGEKVLHVGAGLGHSLAVTAQGS---------IYSWGWNAGHQLGRDERQDSSLP 388

Query: 363 LVVEGLEGE 371
             VE +EG+
Sbjct: 389 ACVEDVEGD 397



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 60/163 (36%), Positives = 82/163 (50%), Gaps = 11/163 (6%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAY----EPTRVPGLP--SDVTSVSAGHYHSLAVTNN 82
           + SFGD S G LG  T+++ V    +        V GL     V  V AG  HSLAVT  
Sbjct: 304 LCSFGDNSLGQLGRSTAISAVQSSIFAVENSEDHVQGLIRGEKVLHVGAGLGHSLAVTAQ 363

Query: 83  GAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWV 142
           G++++WG N   QLGR   + R   + P  VE ++  +V A       S A+   G LWV
Sbjct: 364 GSIYSWGWNAGHQLGR---DERQDSSLPACVEDVEG-DVVALVGGRAHSLALTSQGQLWV 419

Query: 143 WGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHAL 185
           WG  K G+LGLG    E   P  +E+L    I +V+ G+ H+L
Sbjct: 420 WGSGKNGRLGLGSPADEP-SPLLLESLENHCIAEVACGFDHSL 461



 Score = 70.9 bits (172), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 71/238 (29%), Positives = 109/238 (45%), Gaps = 56/238 (23%)

Query: 53  AYEPTRVPGLPSD-VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRG----ALESR--A 105
           A+EP R+  L S  VT +S G  HSL +   G + ++G N+  QLGR     A++S   A
Sbjct: 271 AWEPVRINSLCSQHVTEISCGMDHSLTLNEKGELCSFGDNSLGQLGRSTAISAVQSSIFA 330

Query: 106 TWNDPKRVEGLDQVNVCAAFASGVVSS-AIGDDGSLWVWGKSKRGQLGLGKDITEAIVPS 164
             N    V+GL +        +G+  S A+   GS++ WG +   QLG   +  ++ +P+
Sbjct: 331 VENSEDHVQGLIRGEKVLHVGAGLGHSLAVTAQGSIYSWGWNAGHQLGR-DERQDSSLPA 389

Query: 165 RVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSS 224
            VE + G+ +V +  G  H+LA T  G+L+ WG   +GR+G    A E SPL        
Sbjct: 390 CVEDVEGD-VVALVGGRAHSLALTSQGQLWVWGSGKNGRLGLGSPADEPSPL-------- 440

Query: 225 ESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVE---VVDIACGFDHSLVL 279
                                              L+E +E   + ++ACGFDHSL+L
Sbjct: 441 -----------------------------------LLESLENHCIAEVACGFDHSLIL 463


>gi|302760337|ref|XP_002963591.1| hypothetical protein SELMODRAFT_404893 [Selaginella moellendorffii]
 gi|300168859|gb|EFJ35462.1| hypothetical protein SELMODRAFT_404893 [Selaginella moellendorffii]
          Length = 420

 Score =  274 bits (701), Expect = 5e-71,   Method: Compositional matrix adjust.
 Identities = 161/364 (44%), Positives = 215/364 (59%), Gaps = 37/364 (10%)

Query: 19  IFMRSASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLA 78
           +  R+    AV SFGDGS GALG P S T    D++EP  VPGLP  +  V+ GHYHSLA
Sbjct: 10  VLGRAFHTAAVYSFGDGSNGALGHPHSFTN---DSFEPAAVPGLPPSIARVACGHYHSLA 66

Query: 79  VTNNGAVWAWGRNNEVQLGRG--ALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGD 136
           ++ +G +WAWGRNNE QLGRG  ++ S AT   P+RV G++   V AA  SGVVS AI +
Sbjct: 67  LSRSGELWAWGRNNEGQLGRGEKSILSAATIT-PQRVRGMESTRVRAAAGSGVVSMAICE 125

Query: 137 DGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGW 196
           DGSLW WG SKRGQLGLG  +T +++P ++ ALAG+ +++VS GWGHALA T DG+LF W
Sbjct: 126 DGSLWSWGSSKRGQLGLGLGVTSSLLPQKIHALAGKSVLQVSLGWGHALACTMDGELFSW 185

Query: 197 GYSADGRIGNL---GKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMP 253
           GY   GR+G L    + L   P   ++D +            +  +K++ E + KE    
Sbjct: 186 GYHDSGRLGYLLPQDQTLMIQPSKDSLDHN------------DVGEKMLMEQLRKEDAPI 233

Query: 254 IIWEPFLV---EGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDI 310
           + WEP LV   E  ++V +ACG DHSL L  +G+L S G N   QLGRE  +       +
Sbjct: 234 LQWEPKLVKLPEPSKIVQVACGLDHSLALSESGLLFSFGDNSTAQLGRETTEDSPIISRV 293

Query: 311 -----NFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPDNVPLVV 365
                    V+I +G GHSLA+           +R   +WGW+  SQLGR GP +VP  +
Sbjct: 294 GGDLEGKQVVAIGAGWGHSLAVERC--------SRAAYTWGWSSGSQLGRSGPSSVPKQL 345

Query: 366 EGLE 369
           E L+
Sbjct: 346 EELD 349



 Score = 65.9 bits (159), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 81/319 (25%), Positives = 141/319 (44%), Gaps = 66/319 (20%)

Query: 21  MRSASGTAVVS-----------FGDGSQGALGLPTSLTGVGGDAYEPTRVPGLP-SDVTS 68
           +R+A+G+ VVS           +G   +G LGL   +T     +  P ++  L    V  
Sbjct: 110 VRAAAGSGVVSMAICEDGSLWSWGSSKRGQLGLGLGVT----SSLLPQKIHALAGKSVLQ 165

Query: 69  VSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAF--- 125
           VS G  H+LA T +G +++WG ++  +LG    + +     P + + LD  +V       
Sbjct: 166 VSLGWGHALACTMDGELFSWGYHDSGRLGYLLPQDQTLMIQPSK-DSLDHNDVGEKMLME 224

Query: 126 ---------------------ASGVVSSAIGDD--------GSLWVWGKSKRGQLGLGKD 156
                                 S +V  A G D        G L+ +G +   QLG  ++
Sbjct: 225 QLRKEDAPILQWEPKLVKLPEPSKIVQVACGLDHSLALSESGLLFSFGDNSTAQLG--RE 282

Query: 157 ITE-AIVPSRVEA-LAGEKIVKVSFGWGHALAQTEDGKL-FGWGYSADGRIGNLGKALES 213
            TE + + SRV   L G+++V +  GWGH+LA     +  + WG+S+  ++G  G +   
Sbjct: 283 TTEDSPIISRVGGDLEGKQVVAIGAGWGHSLAVERCSRAAYTWGWSSGSQLGRSGPSSVP 342

Query: 214 SPLDSNIDRS-SESDQEISSSTIEKAQKL----------VSEGMEKEKYMPIIWEPFLVE 262
             L+   D   S +   + S  +    ++          +  G  +++ +P++ E  L E
Sbjct: 343 KQLEELDDPVVSVAGGRVHSLALTSKHQVWTWGCGRNGRLGLGSSRDENLPVLVES-LEE 401

Query: 263 GVEVVDIACGFDHSLVLGR 281
             EV+D+ CG+DHSL+L R
Sbjct: 402 HAEVIDVCCGYDHSLLLAR 420


>gi|302799471|ref|XP_002981494.1| hypothetical protein SELMODRAFT_114812 [Selaginella moellendorffii]
 gi|300150660|gb|EFJ17309.1| hypothetical protein SELMODRAFT_114812 [Selaginella moellendorffii]
          Length = 420

 Score =  272 bits (696), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 162/364 (44%), Positives = 214/364 (58%), Gaps = 37/364 (10%)

Query: 19  IFMRSASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLA 78
           +  R     AV SFGDGS GALG P S T    D++EP  VP LP  +  V+ GHYHSLA
Sbjct: 10  VLGRVLHTAAVYSFGDGSNGALGQPHSFTN---DSFEPAPVPDLPPSIARVACGHYHSLA 66

Query: 79  VTNNGAVWAWGRNNEVQLGRG--ALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGD 136
           +T +G +WAWGRNNE QLGRG  ++ S AT   P+RV G++   V AA  SGVVS AI +
Sbjct: 67  LTQSGELWAWGRNNEGQLGRGEKSILSAATIT-PQRVRGMESTRVRAAAGSGVVSMAICE 125

Query: 137 DGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGW 196
           DGSLW WG SKRGQLGLG  +T +++P ++ ALAG+ +++VS GWGHALA T DG+LF W
Sbjct: 126 DGSLWSWGSSKRGQLGLGLGVTRSLLPQKIHALAGKSVLQVSLGWGHALACTMDGELFSW 185

Query: 197 GYSADGRIGNLGKALESS---PLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMP 253
           GY   GR+G L    + S   P  + +DR+            +  +K++ E + KE    
Sbjct: 186 GYHDSGRLGYLLPQDQPSMIQPSKNTLDRN------------DVGEKMLMEQLRKEDAPI 233

Query: 254 IIWEPFLVEGVE---VVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDI 310
           + WEP LVE  E   ++ +ACG DHSL L  +G+L S G N   QLGRE  +       +
Sbjct: 234 LQWEPKLVELPEPCKIIQVACGLDHSLALSESGLLFSFGDNSTDQLGREITEDSPIISRV 293

Query: 311 -----NFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPDNVPLVV 365
                    V+I +G GHSLA+           +R   +WGW+  SQLGR GP +VP  +
Sbjct: 294 GGDLEGKQVVAIGAGWGHSLAVERC--------SRAAYTWGWSSGSQLGRSGPSSVPKKL 345

Query: 366 EGLE 369
           E L+
Sbjct: 346 EELD 349



 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 80/318 (25%), Positives = 142/318 (44%), Gaps = 64/318 (20%)

Query: 21  MRSASGTAVVS-----------FGDGSQGALGLPTSLTGVGGDAYEPTRVPGLP-SDVTS 68
           +R+A+G+ VVS           +G   +G LGL   +T     +  P ++  L    V  
Sbjct: 110 VRAAAGSGVVSMAICEDGSLWSWGSSKRGQLGLGLGVT----RSLLPQKIHALAGKSVLQ 165

Query: 69  VSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATW----------ND--------- 109
           VS G  H+LA T +G +++WG ++  +LG    + + +           ND         
Sbjct: 166 VSLGWGHALACTMDGELFSWGYHDSGRLGYLLPQDQPSMIQPSKNTLDRNDVGEKMLMEQ 225

Query: 110 ------------PKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDI 157
                       PK VE  +   +         S A+ + G L+ +G +   QLG  ++I
Sbjct: 226 LRKEDAPILQWEPKLVELPEPCKIIQVACGLDHSLALSESGLLFSFGDNSTDQLG--REI 283

Query: 158 TE-AIVPSRVEA-LAGEKIVKVSFGWGHALAQTEDGKL-FGWGYSADGRIGNLGKALESS 214
           TE + + SRV   L G+++V +  GWGH+LA     +  + WG+S+  ++G  G +    
Sbjct: 284 TEDSPIISRVGGDLEGKQVVAIGAGWGHSLAVERCSRAAYTWGWSSGSQLGRSGPSSVPK 343

Query: 215 PLDSNIDRS-SESDQEISSSTIEKAQKL----------VSEGMEKEKYMPIIWEPFLVEG 263
            L+   D   S +   + S  +    ++          +  G  +++ +P++ +  L E 
Sbjct: 344 KLEELDDPVVSVAGGRVHSLALTSKHQVWTWGCGRNGRLGLGSSRDENLPVLVDS-LEEH 402

Query: 264 VEVVDIACGFDHSLVLGR 281
            EV+D+ CG+DHSL+L R
Sbjct: 403 AEVIDVCCGYDHSLLLAR 420


>gi|115444839|ref|NP_001046199.1| Os02g0197500 [Oryza sativa Japonica Group]
 gi|113535730|dbj|BAF08113.1| Os02g0197500 [Oryza sativa Japonica Group]
          Length = 195

 Score =  173 bits (439), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 94/150 (62%), Positives = 106/150 (70%), Gaps = 4/150 (2%)

Query: 28  AVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWA 87
           AV +FGD S GA            D Y PT VP LP+ V +V+AGHYHSLAV+  G VWA
Sbjct: 35  AVYAFGDNSHGA----AGQPAPAADVYVPTPVPSLPTSVAAVAAGHYHSLAVSAEGEVWA 90

Query: 88  WGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSK 147
           WGRN+E QLGRG    R TW+ P++V GL+ V V A  A GVVS+AIG DGSLWVWG+SK
Sbjct: 91  WGRNDEGQLGRGHHAPRNTWSKPEKVRGLENVQVRAVSACGVVSAAIGCDGSLWVWGRSK 150

Query: 148 RGQLGLGKDITEAIVPSRVEALAGEKIVKV 177
           RGQLGLGKDI EA VPSRVEALA   IVKV
Sbjct: 151 RGQLGLGKDIVEAAVPSRVEALANYDIVKV 180



 Score = 42.0 bits (97), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 34/108 (31%), Positives = 53/108 (49%), Gaps = 4/108 (3%)

Query: 123 AAFASGVVSS-AIGDDGSLWVWGKSKRGQLGLGKDITEAI--VPSRVEALAGEKIVKVSF 179
           AA A+G   S A+  +G +W WG++  GQLG G          P +V  L   ++  VS 
Sbjct: 70  AAVAAGHYHSLAVSAEGEVWAWGRNDEGQLGRGHHAPRNTWSKPEKVRGLENVQVRAVSA 129

Query: 180 GWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESD 227
               + A   DG L+ WG S  G++G LGK +  + + S ++  +  D
Sbjct: 130 CGVVSAAIGCDGSLWVWGRSKRGQLG-LGKDIVEAAVPSRVEALANYD 176


>gi|444914429|ref|ZP_21234572.1| BNR repeat domain protein [Cystobacter fuscus DSM 2262]
 gi|444714661|gb|ELW55540.1| BNR repeat domain protein [Cystobacter fuscus DSM 2262]
          Length = 648

 Score =  132 bits (333), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 122/358 (34%), Positives = 180/358 (50%), Gaps = 40/358 (11%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAY-EPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWA 87
           V ++GD + G LG  TS      D++ EP RVPGL S V +VSAG  HSLA+ ++G+VWA
Sbjct: 67  VWAWGDNALGQLGDGTS------DSHSEPVRVPGL-SGVVAVSAGDNHSLALRSDGSVWA 119

Query: 88  WGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSK 147
           WG NN  QLG GA  ++ +++ P R+E L +  V A  A G  S A+  DG++W WG + 
Sbjct: 120 WGDNNSDQLG-GAPGAQ-SYSVPWRLEDLSE--VVAVAAGGNHSLAVRADGTVWAWGDNF 175

Query: 148 RGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNL 207
            GQLG G  +T   +P +V+ L+G  +V  S GW H++    DG ++ WG +  G++GN 
Sbjct: 176 AGQLGDGNILTTRWLPKQVQGLSG--VVAASAGWAHSMVALSDGSVWAWGNNTSGQLGN- 232

Query: 208 GKALESSPLDSNIDR----SSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEG 263
           G ++    L   +       + +   + S  +     L + G             +L   
Sbjct: 233 GISVGYGALPEQVQGLRGVMAVAAGGLYSLALRSDGTLWAWGSNDHGQRGDGSTVYLSSS 292

Query: 264 VE------VVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDIN--FHPV 315
           V       VV +A G  HSL +  +G L + G+N YGQLG   +     P  +      V
Sbjct: 293 VRVRWLSGVVAMAAGSAHSLAVRSDGTLWAWGANYYGQLGDGTRKDHDTPKRVQGLSRVV 352

Query: 316 SISSGLGHSLAICEVRSSNVTGGARGIV-SWGWNRSSQL--GRMGPDNVPLVVEGLEG 370
           ++++G GHS+A+C          A G V +WG+N   QL  G      VPL V  L G
Sbjct: 353 AVAAGDGHSIALC----------ADGTVWTWGYNHDGQLAHGSTNDSPVPLHVRELSG 400



 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 103/312 (33%), Positives = 149/312 (47%), Gaps = 65/312 (20%)

Query: 64  SDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCA 123
           S V +++AG  HSLAV ++G +WAWG N   QLG G  +   T   PKRV+GL +V   A
Sbjct: 299 SGVVAMAAGSAHSLAVRSDGTLWAWGANYYGQLGDGTRKDHDT---PKRVQGLSRVVAVA 355

Query: 124 AFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGH 183
           A     +  A+  DG++W WG +  GQL  G    ++ VP  V  L+G  +V V+ G  H
Sbjct: 356 AGDGHSI--ALCADGTVWTWGYNHDGQLAHGS-TNDSPVPLHVRELSG--VVAVAAGALH 410

Query: 184 ALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVS 243
           +LA   DG ++ WGY+  G++G                     D  +SSS          
Sbjct: 411 SLAVLSDGSVWAWGYNRQGQLG---------------------DGSLSSSA--------- 440

Query: 244 EGMEKEKYMPIIWEPFLVEGVE-VVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQD 302
                        EP  V+G+  V  ++ G +HSL  G +G + + G N +GQLG     
Sbjct: 441 -------------EPVRVQGLSGVAAVSAGLNHSLARGTDGGVWAWGGNSFGQLGEGTTS 487

Query: 303 MGMFPVDINFHP--VSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPDN 360
             + PV +       +IS+G  HSLA    R+S+      G+ +WG N + QLG     N
Sbjct: 488 NALVPVRVRGLSGVETISAGFNHSLA----RASD-----GGLWAWGGNYTGQLGDGTTSN 538

Query: 361 --VPLVVEGLEG 370
             VP+ V+GL G
Sbjct: 539 SSVPVRVQGLSG 550



 Score =  115 bits (287), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 93/262 (35%), Positives = 139/262 (53%), Gaps = 31/262 (11%)

Query: 52  DAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPK 111
           D+  P  V  L S V +V+AG  HSLAV ++G+VWAWG N + QLG G+L S A   +P 
Sbjct: 388 DSPVPLHVREL-SGVVAVAAGALHSLAVLSDGSVWAWGYNRQGQLGDGSLSSSA---EPV 443

Query: 112 RVEGLDQVNVCAAFASGVVSS-AIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALA 170
           RV+GL  V   AA ++G+  S A G DG +W WG +  GQLG G   + A+VP RV  L+
Sbjct: 444 RVQGLSGV---AAVSAGLNHSLARGTDGGVWAWGGNSFGQLGEGT-TSNALVPVRVRGLS 499

Query: 171 GEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDS------------ 218
           G + +   F   H+LA+  DG L+ WG +  G++G+   +  S P+              
Sbjct: 500 GVETISAGF--NHSLARASDGGLWAWGGNYTGQLGDGTTSNSSVPVRVQGLSGVAAVFAG 557

Query: 219 -NIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVD-IACGFDHS 276
            N   +  +D  + +  I    +L  EG     + P+      V+G+  ++ +A G  HS
Sbjct: 558 LNHSLAVRTDGSVWAWGINSFGQL-GEGTTNTSFAPV-----RVQGLSGMETVAAGSLHS 611

Query: 277 LVLGRNGVLLSCGSNVYGQLGR 298
           L +G +G + S G+N +GQLG 
Sbjct: 612 LSVGSDGSMWSWGNNHHGQLGH 633



 Score = 88.6 bits (218), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 98/314 (31%), Positives = 138/314 (43%), Gaps = 76/314 (24%)

Query: 69  VSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASG 128
           ++AG  HSLA+ ++G VWAWG N   QLG G+ +S +   +P RV GL    V A  A  
Sbjct: 1   MAAGTDHSLALRHDGTVWAWGGNALGQLGDGSSDSHS---EPVRVRGLS--GVVAVSAGE 55

Query: 129 VVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQT 188
             S A+  DG++W WG +  GQLG G   + +  P RV  L+G  +V VS G  H+LA  
Sbjct: 56  GHSLALHRDGTVWAWGDNALGQLGDGTSDSHS-EPVRVPGLSG--VVAVSAGDNHSLALR 112

Query: 189 EDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEK 248
            DG ++ WG                   D+N D+   +    S S   + + L       
Sbjct: 113 SDGSVWAWG-------------------DNNSDQLGGAPGAQSYSVPWRLEDL------- 146

Query: 249 EKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGR---------E 299
                           EVV +A G +HSL +  +G + + G N  GQLG           
Sbjct: 147 ---------------SEVVAVAAGGNHSLAVRADGTVWAWGDNFAGQLGDGNILTTRWLP 191

Query: 300 KQDMGMFPVDINFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGR---M 356
           KQ  G+  V      V+ S+G  HS+      S         + +WG N S QLG    +
Sbjct: 192 KQVQGLSGV------VAASAGWAHSMVALSDGS---------VWAWGNNTSGQLGNGISV 236

Query: 357 GPDNVPLVVEGLEG 370
           G   +P  V+GL G
Sbjct: 237 GYGALPEQVQGLRG 250



 Score = 87.0 bits (214), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 70/179 (39%), Positives = 97/179 (54%), Gaps = 16/179 (8%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAW 88
           V ++G  S G LG  T+      +A  P RV GL S V ++SAG  HSLA  ++G +WAW
Sbjct: 470 VWAWGGNSFGQLGEGTT-----SNALVPVRVRGL-SGVETISAGFNHSLARASDGGLWAW 523

Query: 89  GRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKR 148
           G N   QLG G   + +    P RV+GL    V A FA    S A+  DGS+W WG +  
Sbjct: 524 GGNYTGQLGDGTTSNSSV---PVRVQGLS--GVAAVFAGLNHSLAVRTDGSVWAWGINSF 578

Query: 149 GQLGLGKDITEAIVPSRVEALAG-EKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGN 206
           GQLG G   T +  P RV+ L+G E +   S    H+L+   DG ++ WG +  G++G+
Sbjct: 579 GQLGEGTTNT-SFAPVRVQGLSGMETVAAGSL---HSLSVGSDGSMWSWGNNHHGQLGH 633



 Score = 70.1 bits (170), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 46/99 (46%), Positives = 59/99 (59%), Gaps = 6/99 (6%)

Query: 56  PTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEG 115
           P RV GL S V +V AG  HSLAV  +G+VWAWG N+  QLG G   +      P RV+G
Sbjct: 542 PVRVQGL-SGVAAVFAGLNHSLAVRTDGSVWAWGINSFGQLGEGTTNTSFA---PVRVQG 597

Query: 116 LDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLG 154
           L  +   AA +  + S ++G DGS+W WG +  GQLG G
Sbjct: 598 LSGMETVAAGS--LHSLSVGSDGSMWSWGNNHHGQLGHG 634



 Score = 46.6 bits (109), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 30/72 (41%), Positives = 46/72 (63%), Gaps = 6/72 (8%)

Query: 28  AVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWA 87
           +V ++G  S G LG  T+ T     ++ P RV GL S + +V+AG  HSL+V ++G++W+
Sbjct: 569 SVWAWGINSFGQLGEGTTNT-----SFAPVRVQGL-SGMETVAAGSLHSLSVGSDGSMWS 622

Query: 88  WGRNNEVQLGRG 99
           WG N+  QLG G
Sbjct: 623 WGNNHHGQLGHG 634


>gi|444910459|ref|ZP_21230644.1| BNR repeat domain protein [Cystobacter fuscus DSM 2262]
 gi|444719396|gb|ELW60193.1| BNR repeat domain protein [Cystobacter fuscus DSM 2262]
          Length = 693

 Score =  125 bits (313), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 117/365 (32%), Positives = 168/365 (46%), Gaps = 75/365 (20%)

Query: 12  VNVLTSRIFMRSASGT--AVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSV 69
           V  L+S I+   A  T   V ++GD + G LG      G       P +VPGL +DV ++
Sbjct: 148 VVALSSGIYHSLALRTDGTVWAWGDNASGQLG-----DGTATRRLSPVQVPGL-TDVVAL 201

Query: 70  SAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGV 129
           SAG YHSLAV  +G VWAWG N   QLG G    R +   P +V GL   NV A  A   
Sbjct: 202 SAGGYHSLAVRTDGTVWAWGSNFSGQLGDGTATPRLS---PVQVSGL--TNVVALSADDS 256

Query: 130 VSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTE 189
            + A+  DG++W WG +  GQLG G   T  + P +V  L    +V +S G+ H+LA   
Sbjct: 257 YTLALRTDGTVWAWGYNSYGQLGDGT-TTPRLSPVQVPGL--TNVVALSAGYSHSLALRT 313

Query: 190 DGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKE 249
           DG ++ WGY+ +G++GN G   + SP                                  
Sbjct: 314 DGTVWAWGYNYNGQLGN-GIPTQRSP---------------------------------- 338

Query: 250 KYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVD 309
             +P+         ++VV ++ G+ HSL L  +G + + G N  GQLG         PV 
Sbjct: 339 -SIPVF------GLIDVVALSAGYSHSLALRTDGTVWAWGYNSLGQLGDGTTIPRPSPVQ 391

Query: 310 IN--FHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLG------RMGPDNV 361
           +      V++S+G  HSLA+   R+         + +WG N S QLG      R+ P  V
Sbjct: 392 VPDLTDVVALSAGDSHSLAL---RTDGT------VRAWGVNYSGQLGDGTTTHRLSPVQV 442

Query: 362 PLVVE 366
           P + +
Sbjct: 443 PDLTD 447



 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 105/326 (32%), Positives = 154/326 (47%), Gaps = 36/326 (11%)

Query: 58  RVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLD 117
           +VPGL +DV ++SAG  ++LA+  +G VWAWG N   QLG G    R     P +V GL 
Sbjct: 91  QVPGL-TDVVALSAGSSYTLALRTDGTVWAWGYNFYGQLGDGTTTPRLA---PVQVPGLT 146

Query: 118 QVNVCAAFASGVVSS-AIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVK 176
            V    A +SG+  S A+  DG++W WG +  GQLG G   T  + P +V  L    +V 
Sbjct: 147 DV---VALSSGIYHSLALRTDGTVWAWGDNASGQLGDGT-ATRRLSPVQVPGL--TDVVA 200

Query: 177 VSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLD----SNIDRSSESDQ---E 229
           +S G  H+LA   DG ++ WG +  G++G+       SP+     +N+   S  D     
Sbjct: 201 LSAGGYHSLAVRTDGTVWAWGSNFSGQLGDGTATPRLSPVQVSGLTNVVALSADDSYTLA 260

Query: 230 ISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGV-EVVDIACGFDHSLVLGRNGVLLSC 288
           + +     A    S G   +        P  V G+  VV ++ G+ HSL L  +G + + 
Sbjct: 261 LRTDGTVWAWGYNSYGQLGDGTTTPRLSPVQVPGLTNVVALSAGYSHSLALRTDGTVWAW 320

Query: 289 GSNVYGQLGR--EKQDMGMFPVDINFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWG 346
           G N  GQLG     Q     PV      V++S+G  HSLA+   R+         + +WG
Sbjct: 321 GYNYNGQLGNGIPTQRSPSIPVFGLIDVVALSAGYSHSLAL---RTDGT------VWAWG 371

Query: 347 WNRSSQLG------RMGPDNVPLVVE 366
           +N   QLG      R  P  VP + +
Sbjct: 372 YNSLGQLGDGTTIPRPSPVQVPDLTD 397



 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 98/315 (31%), Positives = 153/315 (48%), Gaps = 30/315 (9%)

Query: 55  EPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVE 114
            P +VPGL +DV ++SAG++H LA+  +G VWAWG N+  QLG G    R +     +V 
Sbjct: 38  SPVQVPGL-TDVVALSAGNHHCLALRTDGTVWAWGSNSSGQLGDGTTTPRLS---SVQVP 93

Query: 115 GLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKI 174
           GL   +V A  A    + A+  DG++W WG +  GQLG G   T  + P +V  L    +
Sbjct: 94  GL--TDVVALSAGSSYTLALRTDGTVWAWGYNFYGQLGDGT-TTPRLAPVQVPGL--TDV 148

Query: 175 VKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSP-----LDSNIDRSSESDQE 229
           V +S G  H+LA   DG ++ WG +A G++G+       SP     L   +  S+     
Sbjct: 149 VALSSGIYHSLALRTDGTVWAWGDNASGQLGDGTATRRLSPVQVPGLTDVVALSAGGYHS 208

Query: 230 I---SSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGV-EVVDIACGFDHSLVLGRNGVL 285
           +   +  T+       S  +      P +  P  V G+  VV ++    ++L L  +G +
Sbjct: 209 LAVRTDGTVWAWGSNFSGQLGDGTATPRL-SPVQVSGLTNVVALSADDSYTLALRTDGTV 267

Query: 286 LSCGSNVYGQLGREKQDMGMFPVDIN--FHPVSISSGLGHSLAICEVRSSNVTGGARGIV 343
            + G N YGQLG       + PV +    + V++S+G  HSLA+   R+         + 
Sbjct: 268 WAWGYNSYGQLGDGTTTPRLSPVQVPGLTNVVALSAGYSHSLAL---RTDGT------VW 318

Query: 344 SWGWNRSSQLGRMGP 358
           +WG+N + QLG   P
Sbjct: 319 AWGYNYNGQLGNGIP 333



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 97/302 (32%), Positives = 141/302 (46%), Gaps = 62/302 (20%)

Query: 55  EPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVE 114
            P +VP L +DV ++SAG  H+LA+  NG VWAWG N++ QLG G    R +   P ++ 
Sbjct: 438 SPVQVPDL-TDVVALSAGGNHTLALRTNGTVWAWGSNSDGQLGDGTTTPRLS---PVQML 493

Query: 115 GLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKI 174
           GL   NV A  A    S A+  DG++W WG +  GQLG G   T  + P +V  L    +
Sbjct: 494 GL--TNVVALSAGYYHSLAVHTDGTVWAWGSNSDGQLGDGT-TTHRLTPVQVPGL--TDV 548

Query: 175 VKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSST 234
           V +S G  H+LA   DG ++ WG ++  ++G+                          +T
Sbjct: 549 VALSAGDSHSLALRTDGTVWAWGSNSSSQLGD-------------------------GTT 583

Query: 235 IEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYG 294
             +   +   G+                  +VV ++ G  HSL L  +G + + GSN YG
Sbjct: 584 TPRGSPVQVPGL-----------------TDVVALSAGGAHSLALRTDGTVWAWGSNYYG 626

Query: 295 QLGREKQDMGMFPVDI-NFHPVS-ISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQ 352
           QLG       +FPV + N    S + +G GHSLA+     ++ TG A     WG N   Q
Sbjct: 627 QLGDGTTTPRLFPVLVSNLTGTSNLYAGAGHSLAL----RTDGTGRA-----WGNNYGGQ 677

Query: 353 LG 354
           LG
Sbjct: 678 LG 679



 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 103/343 (30%), Positives = 156/343 (45%), Gaps = 43/343 (12%)

Query: 51  GDAYEPTRVPGLPS----DVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRAT 106
           G+     R P +P     DV ++SAG+ HSLA+  +G VWAWG N+  QLG G    R  
Sbjct: 329 GNGIPTQRSPSIPVFGLIDVVALSAGYSHSLALRTDGTVWAWGYNSLGQLGDGTTIPR-- 386

Query: 107 WNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRV 166
              P  V+  D  +V A  A    S A+  DG++  WG +  GQLG G   T  + P +V
Sbjct: 387 ---PSPVQVPDLTDVVALSAGDSHSLALRTDGTVRAWGVNYSGQLGDGT-TTHRLSPVQV 442

Query: 167 EALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSP-----LDSNID 221
             L    +V +S G  H LA   +G ++ WG ++DG++G+       SP     L + + 
Sbjct: 443 PDL--TDVVALSAGGNHTLALRTNGTVWAWGSNSDGQLGDGTTTPRLSPVQMLGLTNVVA 500

Query: 222 RSSESDQEISSSTI-------EKAQKLVSEGMEKEKYMPIIWEPFLVEGV-EVVDIACGF 273
            S+     ++  T          +   + +G    +  P+      V G+ +VV ++ G 
Sbjct: 501 LSAGYYHSLAVHTDGTVWAWGSNSDGQLGDGTTTHRLTPV-----QVPGLTDVVALSAGD 555

Query: 274 DHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDIN--FHPVSISSGLGHSLAICEVR 331
            HSL L  +G + + GSN   QLG         PV +      V++S+G  HSLA+   R
Sbjct: 556 SHSLALRTDGTVWAWGSNSSSQLGDGTTTPRGSPVQVPGLTDVVALSAGGAHSLAL---R 612

Query: 332 SSNVTGGARGIVSWGWNRSSQL--GRMGPDNVPLVVEGLEGES 372
           +         + +WG N   QL  G   P   P++V  L G S
Sbjct: 613 TDGT------VWAWGSNYYGQLGDGTTTPRLFPVLVSNLTGTS 649



 Score = 99.4 bits (246), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 94/314 (29%), Positives = 143/314 (45%), Gaps = 41/314 (13%)

Query: 69  VSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASG 128
           ++AG+ HSLA+  +G VWAWG N+  QLG G    R +   P +V GL   +V A  A  
Sbjct: 1   MAAGYSHSLALHTDGTVWAWGSNSSGQLGDGTTTPRGS---PVQVPGL--TDVVALSAGN 55

Query: 129 VVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQT 188
               A+  DG++W WG +  GQLG   D T     S V+      +V +S G  + LA  
Sbjct: 56  HHCLALRTDGTVWAWGSNSSGQLG---DGTTTPRLSSVQVPGLTDVVALSAGSSYTLALR 112

Query: 189 EDGKLFGWGYSADGRIGNLGKALESSP-----LDSNIDRSSESDQEISSSTI-------E 236
            DG ++ WGY+  G++G+       +P     L   +  SS     ++  T        +
Sbjct: 113 TDGTVWAWGYNFYGQLGDGTTTPRLAPVQVPGLTDVVALSSGIYHSLALRTDGTVWAWGD 172

Query: 237 KAQKLVSEGMEKEKYMPIIWEPFLVEGV-EVVDIACGFDHSLVLGRNGVLLSCGSNVYGQ 295
            A   + +G    +  P+      V G+ +VV ++ G  HSL +  +G + + GSN  GQ
Sbjct: 173 NASGQLGDGTATRRLSPV-----QVPGLTDVVALSAGGYHSLAVRTDGTVWAWGSNFSGQ 227

Query: 296 LGREKQDMGMFPVDINFHPVSISSGLGHSLAICEVRSSNVTGGARGIV-SWGWNRSSQLG 354
           LG       + PV +        SGL + +A+    S  +     G V +WG+N   QLG
Sbjct: 228 LGDGTATPRLSPVQV--------SGLTNVVALSADDSYTLALRTDGTVWAWGYNSYGQLG 279

Query: 355 ------RMGPDNVP 362
                 R+ P  VP
Sbjct: 280 DGTTTPRLSPVQVP 293



 Score = 91.3 bits (225), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 85/283 (30%), Positives = 123/283 (43%), Gaps = 58/283 (20%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAW 88
           V ++G  S G LG      G       P ++ GL ++V ++SAG+YHSLAV  +G VWAW
Sbjct: 467 VWAWGSNSDGQLG-----DGTTTPRLSPVQMLGL-TNVVALSAGYYHSLAVHTDGTVWAW 520

Query: 89  GRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKR 148
           G N++ QLG G    R T   P +V GL   +V A  A    S A+  DG++W WG +  
Sbjct: 521 GSNSDGQLGDGTTTHRLT---PVQVPGL--TDVVALSAGDSHSLALRTDGTVWAWGSNSS 575

Query: 149 GQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLG 208
            QLG G   T    P +V  L    +V +S G  H+LA   DG ++ WG +  G++G   
Sbjct: 576 SQLGDGT-TTPRGSPVQVPGL--TDVVALSAGGAHSLALRTDGTVWAWGSNYYGQLG--- 629

Query: 209 KALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVE-VV 267
                                              +G    +  P+     LV  +    
Sbjct: 630 -----------------------------------DGTTTPRLFPV-----LVSNLTGTS 649

Query: 268 DIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDI 310
           ++  G  HSL L  +G   + G+N  GQLG       + PV +
Sbjct: 650 NLYAGAGHSLALRTDGTGRAWGNNYGGQLGDGTSAFFLHPVQV 692


>gi|444919547|ref|ZP_21239559.1| BNR repeat domain protein [Cystobacter fuscus DSM 2262]
 gi|444708350|gb|ELW49425.1| BNR repeat domain protein [Cystobacter fuscus DSM 2262]
          Length = 684

 Score =  124 bits (312), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 108/318 (33%), Positives = 158/318 (49%), Gaps = 66/318 (20%)

Query: 56  PTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEG 115
           P +V GL S+V + +AG  HSLA+ N+G VWAWG N   QLG G+L SRA   +P +V+G
Sbjct: 29  PVQVLGL-SEVVAAAAGSIHSLALRNDGTVWAWGYNGYGQLGNGSLGSRA---EPVQVQG 84

Query: 116 LD-QVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKI 174
           L   V+V A       S A+ DDG++W WG +  GQLG G   T  +VP +V+ L+  ++
Sbjct: 85  LSGGVSVDAGHYH---SLAVRDDGTVWAWGDNPNGQLGEGT-TTRRLVPVQVQGLS--EV 138

Query: 175 VKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSST 234
           V V+ G  H+LA   DG ++ WG +A G++G                             
Sbjct: 139 VAVTAGSSHSLALRSDGTVWAWGANASGQLG----------------------------- 169

Query: 235 IEKAQKLVSEGMEKEKYMPIIWEPFLVEGV-EVVDIACGFDHSLVLGRNGVLLSCGSNVY 293
                    EG    + +P+   P L  G+ EVV +  G  HSL L  +G + + G+N  
Sbjct: 170 ---------EGTTTNRLVPV---PVL--GLSEVVAVEAGSSHSLALRSDGTVWAWGANAS 215

Query: 294 GQLGREKQDMGMFPVDINFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQL 353
           GQLG       + PV +    V++ +G G+SLA   VR+         + +WG+N S QL
Sbjct: 216 GQLGDGTTTKRLVPVQVLSGVVAMEAGSGYSLA---VRNDGT------VWAWGYNFSGQL 266

Query: 354 G--RMGPDNVPLVVEGLE 369
           G   +   + P+ V GL 
Sbjct: 267 GDDTVTSRSTPVQVLGLS 284



 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 105/321 (32%), Positives = 148/321 (46%), Gaps = 66/321 (20%)

Query: 56  PTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEG 115
           P +  GL   V +V+AG+ HSLAV ++G VWAWG N   QLG G   +R+   +P +V+G
Sbjct: 327 PVQARGLSGGV-AVAAGYAHSLAVRSDGTVWAWGSNASGQLGEGTTSNRS---EPVQVQG 382

Query: 116 LDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIV 175
           L  V   +A AS   S AI  DG++W WG +  GQLG G   T+ +VP +V+ L+G  +V
Sbjct: 383 LSGVVAVSAGASS--SLAIRSDGTVWAWGSNASGQLGDGT-TTDRLVPVQVQGLSG--VV 437

Query: 176 KVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTI 235
            V  G   +LA   DG ++GWGY+  G++G                            T 
Sbjct: 438 AVVAGTSFSLAVRNDGTVWGWGYNGYGQLG----------------------------TF 469

Query: 236 EKAQKLVSEGMEKEKYMPIIWEPFLVEGVE-VVDIACGFDHSLVLGRNGVLLSCGSNVYG 294
                LV               P  V G+  VV +A G  HSL +  +G + + G N  G
Sbjct: 470 TSLFVLV---------------PVQVTGLSGVVAVAAGNLHSLAVRSDGTVWALGRNDNG 514

Query: 295 QLGREKQDMGMFPVDINFHP--VSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQ 352
           QLG         PV +      VS+++G  HSLA+    S         + +WG+N   Q
Sbjct: 515 QLGDGSWTNRSAPVQVTGLSGVVSVAAGDSHSLAVRYDGS---------VWAWGYNSFGQ 565

Query: 353 L--GRMGPDNVPLVVEGLEGE 371
           L  G     + P+ V GL G 
Sbjct: 566 LGDGSWFQRSAPVQVTGLSGR 586



 Score =  105 bits (263), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 103/324 (31%), Positives = 153/324 (47%), Gaps = 39/324 (12%)

Query: 64  SDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCA 123
           S V ++ AG  +SLAV N+G VWAWG N   QLG   + SR+T   P +V GL +V   A
Sbjct: 234 SGVVAMEAGSGYSLAVRNDGTVWAWGYNFSGQLGDDTVTSRST---PVQVLGLSEVVAVA 290

Query: 124 AFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGH 183
           A +S  +S A+  DG++W WG +  GQ G G     A  P +   L+G   V V+ G+ H
Sbjct: 291 AGSS--LSLALRSDGTVWAWGSNDYGQRGEGTTSNRAF-PVQARGLSGG--VAVAAGYAH 345

Query: 184 ALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSN-------IDRSSESDQEISSSTI- 235
           +LA   DG ++ WG +A G++G    +  S P+          +   + S   I S    
Sbjct: 346 SLAVRSDGTVWAWGSNASGQLGEGTTSNRSEPVQVQGLSGVVAVSAGASSSLAIRSDGTV 405

Query: 236 ----EKAQKLVSEGMEKEKYMPIIWEPFLVEGVE-VVDIACGFDHSLVLGRNGVLLSCGS 290
                 A   + +G   ++ +P+      V+G+  VV +  G   SL +  +G +   G 
Sbjct: 406 WAWGSNASGQLGDGTTTDRLVPV-----QVQGLSGVVAVVAGTSFSLAVRNDGTVWGWGY 460

Query: 291 NVYGQLGREKQDMGMFPVDINFHP--VSISSGLGHSLAICEVRSSNVTGGARGIVSWGWN 348
           N YGQLG       + PV +      V++++G  HSLA   VRS         + + G N
Sbjct: 461 NGYGQLGTFTSLFVLVPVQVTGLSGVVAVAAGNLHSLA---VRSDGT------VWALGRN 511

Query: 349 RSSQLGRMGPDN--VPLVVEGLEG 370
            + QLG     N   P+ V GL G
Sbjct: 512 DNGQLGDGSWTNRSAPVQVTGLSG 535



 Score = 95.1 bits (235), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 65/151 (43%), Positives = 89/151 (58%), Gaps = 8/151 (5%)

Query: 56  PTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEG 115
           P +V GL S V SV+AG  HSLAV  +G+VWAWG N+  QLG G+   R+    P +V G
Sbjct: 527 PVQVTGL-SGVVSVAAGDSHSLAVRYDGSVWAWGYNSFGQLGDGSWFQRSA---PVQVTG 582

Query: 116 LDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIV 175
           L      AA  S   S A+  DG++W WG +  GQLG G   +  +VP +V+ L G  +V
Sbjct: 583 LSGRGSVAA--SSDYSMAVRYDGTVWAWGFNLYGQLGDGTTSSNQLVPVQVQQLRG--VV 638

Query: 176 KVSFGWGHALAQTEDGKLFGWGYSADGRIGN 206
            V  G  H+LA   DG ++ WGY++ G++GN
Sbjct: 639 AVEVGSSHSLALRSDGTVWTWGYNSFGQLGN 669



 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 95/319 (29%), Positives = 149/319 (46%), Gaps = 37/319 (11%)

Query: 55  EPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVE 114
           EP +V GL S V +VSAG   SLA+ ++G VWAWG N   QLG G    R     P +V+
Sbjct: 376 EPVQVQGL-SGVVAVSAGASSSLAIRSDGTVWAWGSNASGQLGDGTTTDRLV---PVQVQ 431

Query: 115 GLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKI 174
           GL    V A  A    S A+ +DG++W WG +  GQLG    +   +VP +V  L+G  +
Sbjct: 432 GLS--GVVAVVAGTSFSLAVRNDGTVWGWGYNGYGQLGTFTSLF-VLVPVQVTGLSG--V 486

Query: 175 VKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLD----SNIDRSSESDQEI 230
           V V+ G  H+LA   DG ++  G + +G++G+      S+P+     S +   +  D   
Sbjct: 487 VAVAAGNLHSLAVRSDGTVWALGRNDNGQLGDGSWTNRSAPVQVTGLSGVVSVAAGDSHS 546

Query: 231 SSSTIE--------KAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRN 282
            +   +         +   + +G   ++  P+        G     +A   D+S+ +  +
Sbjct: 547 LAVRYDGSVWAWGYNSFGQLGDGSWFQRSAPVQVTGLSGRG----SVAASSDYSMAVRYD 602

Query: 283 GVLLSCGSNVYGQLGR-EKQDMGMFPVDIN--FHPVSISSGLGHSLAICEVRSSNVTGGA 339
           G + + G N+YGQLG        + PV +      V++  G  HSLA+   RS       
Sbjct: 603 GTVWAWGFNLYGQLGDGTTSSNQLVPVQVQQLRGVVAVEVGSSHSLAL---RSDGT---- 655

Query: 340 RGIVSWGWNRSSQLGRMGP 358
             + +WG+N   QLG   P
Sbjct: 656 --VWTWGYNSFGQLGNGPP 672



 Score = 88.2 bits (217), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 88/275 (32%), Positives = 125/275 (45%), Gaps = 73/275 (26%)

Query: 32  FGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRN 91
           +G    G LG  TSL         P +V GL S V +V+AG+ HSLAV ++G VWA GRN
Sbjct: 458 WGYNGYGQLGTFTSLF-----VLVPVQVTGL-SGVVAVAAGNLHSLAVRSDGTVWALGRN 511

Query: 92  NEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGD--------DGSLWVW 143
           +  QLG G+  +R+    P +V GL          SGVVS A GD        DGS+W W
Sbjct: 512 DNGQLGDGSWTNRSA---PVQVTGL----------SGVVSVAAGDSHSLAVRYDGSVWAW 558

Query: 144 GKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGR 203
           G +  GQLG G     +  P +V  L+G   V  S    +++A   DG ++ WG++  G+
Sbjct: 559 GYNSFGQLGDGSWFQRS-APVQVTGLSGRGSVAASS--DYSMAVRYDGTVWAWGFNLYGQ 615

Query: 204 IGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEG 263
           +G               D ++ S+Q +                           P  V+ 
Sbjct: 616 LG---------------DGTTSSNQLV---------------------------PVQVQQ 633

Query: 264 VE-VVDIACGFDHSLVLGRNGVLLSCGSNVYGQLG 297
           +  VV +  G  HSL L  +G + + G N +GQLG
Sbjct: 634 LRGVVAVEVGSSHSLALRSDGTVWTWGYNSFGQLG 668



 Score = 48.9 bits (115), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 43/108 (39%), Positives = 55/108 (50%), Gaps = 7/108 (6%)

Query: 56  PTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEG 115
           P +V GL S   SV+A   +S+AV  +G VWAWG N   QLG G   S      P +V+ 
Sbjct: 577 PVQVTGL-SGRGSVAASSDYSMAVRYDGTVWAWGFNLYGQLGDGTTSSNQL--VPVQVQQ 633

Query: 116 LDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDI--TEAI 161
           L    V A       S A+  DG++W WG +  GQLG G  +  T AI
Sbjct: 634 LR--GVVAVEVGSSHSLALRSDGTVWTWGYNSFGQLGNGPPLYATTAI 679


>gi|312622781|ref|YP_004024394.1| regulator of chromosome condensation rcc1 [Caldicellulosiruptor
           kronotskyensis 2002]
 gi|312203248|gb|ADQ46575.1| regulator of chromosome condensation RCC1 [Caldicellulosiruptor
           kronotskyensis 2002]
          Length = 743

 Score =  124 bits (311), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 107/337 (31%), Positives = 163/337 (48%), Gaps = 35/337 (10%)

Query: 48  GVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATW 107
           G   D+  P RV GL  DV +VSAG +HSLA+  +G+VW WG  N  Q          T 
Sbjct: 77  GTYKDSCIPVRVKGLK-DVVAVSAGTFHSLALKKDGSVWIWGHTNYGQRKSDVYRDFTT- 134

Query: 108 NDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVE 167
             P +V+ L   N+ A  A    S A+G DGS+W WG +  G+LG+G  +  + VP +V+
Sbjct: 135 --PVKVKELK--NIVAIAAGWDFSLAVGSDGSVWAWGINNHGELGIG-SLKPSAVPVKVK 189

Query: 168 ALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESD 227
            L  + +V VS G  H+LA   DG ++ WGY+ DG +GN  +  E   +   +     SD
Sbjct: 190 GL--KDVVAVSAGLYHSLALKRDGTVWSWGYNEDGELGN--RPTEDYTVSVPVRVKGLSD 245

Query: 228 QEISSSTIEKAQKLVSEG---------MEKEKYMPIIWEPFLVEGV-EVVDIACGFDHSL 277
               S+    +  L  +G         +EK   +   + P  +  + +VV IA G+ HS+
Sbjct: 246 VIAISAGGFHSIALNKDGAVWIWGGGIIEKNGKIDNSYIPVRIRWLNKVVAIAAGYRHSI 305

Query: 278 VLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDIN--FHPVSISSGLGHSLAICEVRSSNV 335
            L  +G +   G N YG LG    +    PV +    + V++++G  HS+A+ +  +   
Sbjct: 306 ALKDDGTVWVWGHNSYGVLGSNVGEHSFLPVQVKGLKNVVAVAAGRLHSVALTKNGT--- 362

Query: 336 TGGARGIVSWGWNRSSQLGRMGPD---NVPLVVEGLE 369
                 I +WG N   QLGR       N+P  V+ L+
Sbjct: 363 ------IWAWGNNAFGQLGRENNSFSLNLPYKVKWLD 393



 Score =  117 bits (293), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 98/320 (30%), Positives = 155/320 (48%), Gaps = 67/320 (20%)

Query: 56  PTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEG 115
           P +V GL  DV +VSAG YHSLA+  +G VW+WG N + +LG    E     + P RV+G
Sbjct: 185 PVKVKGLK-DVVAVSAGLYHSLALKRDGTVWSWGYNEDGELGNRPTEDYTV-SVPVRVKG 242

Query: 116 LDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIV 175
           L   +V A  A G  S A+  DG++W+WG    G +     I  + +P R+  L   K+V
Sbjct: 243 LS--DVIAISAGGFHSIALNKDGAVWIWGG---GIIEKNGKIDNSYIPVRIRWL--NKVV 295

Query: 176 KVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTI 235
            ++ G+ H++A  +DG ++ WG+++ G +G            SN+   S           
Sbjct: 296 AIAAGYRHSIALKDDGTVWVWGHNSYGVLG------------SNVGEHS----------- 332

Query: 236 EKAQKLVSEGMEKEKYMPIIWEPFLVEGVE-VVDIACGFDHSLVLGRNGVLLSCGSNVYG 294
                          ++P+      V+G++ VV +A G  HS+ L +NG + + G+N +G
Sbjct: 333 ---------------FLPV-----QVKGLKNVVAVAAGRLHSVALTKNGTIWAWGNNAFG 372

Query: 295 QLGREKQDMGM-FPVDINF--HPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSS 351
           QLGRE     +  P  + +  + V+I++G  H+LAI    +         + SWG N   
Sbjct: 373 QLGRENNSFSLNLPYKVKWLDNVVAIAAGGSHTLAIKRDGT---------VWSWGANNKG 423

Query: 352 QLGR--MGPDNVPLVVEGLE 369
           QLG        +P  V+GL 
Sbjct: 424 QLGNGTYKSSYIPTCVKGLN 443



 Score =  101 bits (252), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 96/329 (29%), Positives = 160/329 (48%), Gaps = 35/329 (10%)

Query: 56  PTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEG 115
           P +V  L  +V +++AG  H+LA+  +G VW+WG NN+ QLG G  +S      P  V+G
Sbjct: 386 PYKVKWL-DNVVAIAAGGSHTLAIKRDGTVWSWGANNKGQLGNGTYKSSYI---PTCVKG 441

Query: 116 LDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIV 175
           L++  +  A +    S A+  DG++WVWG  +   +   K+  + + P  ++      I 
Sbjct: 442 LNKAVLVEAGSQH--SLAVDKDGTVWVWGFIE--SVWSEKNTKDILSPLPIKIGKLNDIT 497

Query: 176 KVSFGWGHALAQTEDGKLFGWGYS------ADGRIGNLGKALESSPLDSNIDRSSESDQE 229
           +++ G  + L   +DG ++G G         D  + ++ K +    LD+  +  S +   
Sbjct: 498 EIAGGLDYILVLRKDGNIWGCGNDFYFRKFTDSSVSSVTKLIR---LDNIKNVRSIAAGY 554

Query: 230 ISSSTIEKAQKLVSEG----MEKEKYMPIIWEPFLVEGVE-VVDIACGFDHSLVLGRNGV 284
             S  +     + S G      KEKY+    +P  ++G+  VV +A G  HSL L ++G 
Sbjct: 555 FHSLAVRTDGTVWSWGDTNLDNKEKYLNFSEKPVKIKGLSGVVKVAAGKYHSLALKKDGT 614

Query: 285 LLSCGSNVYGQLGREKQDMGMFPVDIN--FHPVSISSGLGHSLAICEVRSSNVTGGARGI 342
           + S G N YGQLG   ++    PV +    + V+I++G  HS+A+ +  +  V       
Sbjct: 615 VWSWGYNAYGQLGNGTRETSFVPVRVKGLNNVVAIAAGDYHSMALKKDGTVWV------- 667

Query: 343 VSWGWNRSSQLGRMGPD--NVPLVVEGLE 369
             WG N   QLGR   +   VPL VE L+
Sbjct: 668 --WGSNIRGQLGRRNIEFSTVPLKVEKLD 694



 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 95/302 (31%), Positives = 145/302 (48%), Gaps = 63/302 (20%)

Query: 32  FGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRN 91
           +G  S G LG     + VG  ++ P +V GL  +V +V+AG  HS+A+T NG +WAWG N
Sbjct: 316 WGHNSYGVLG-----SNVGEHSFLPVQVKGLK-NVVAVAAGRLHSVALTKNGTIWAWGNN 369

Query: 92  NEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQL 151
              QLGR    +  + N P +V+ LD  NV A  A G  + AI  DG++W WG + +GQL
Sbjct: 370 AFGQLGRE--NNSFSLNLPYKVKWLD--NVVAIAAGGSHTLAIKRDGTVWSWGANNKGQL 425

Query: 152 GLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKAL 211
           G G     + +P+ V+ L   K V V  G  H+LA  +DG ++ WG+            +
Sbjct: 426 GNGT-YKSSYIPTCVKGL--NKAVLVEAGSQHSLAVDKDGTVWVWGF------------I 470

Query: 212 ESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIAC 271
           ES         S ++ ++I S    K  KL                       ++ +IA 
Sbjct: 471 ESV-------WSEKNTKDILSPLPIKIGKL----------------------NDITEIAG 501

Query: 272 GFDHSLVLGRNGVLLSCGSNVYGQLGREKQD------MGMFPVDINFHPVSISSGLGHSL 325
           G D+ LVL ++G +  CG++ Y    R+  D        +  +D   +  SI++G  HSL
Sbjct: 502 GLDYILVLRKDGNIWGCGNDFY---FRKFTDSSVSSVTKLIRLDNIKNVRSIAAGYFHSL 558

Query: 326 AI 327
           A+
Sbjct: 559 AV 560



 Score = 97.8 bits (242), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 61/147 (41%), Positives = 88/147 (59%), Gaps = 9/147 (6%)

Query: 55  EPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVE 114
           +P ++ GL S V  V+AG YHSLA+  +G VW+WG N   QLG G  E+      P RV+
Sbjct: 586 KPVKIKGL-SGVVKVAAGKYHSLALKKDGTVWSWGYNAYGQLGNGTRETSFV---PVRVK 641

Query: 115 GLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKI 174
           GL+  NV A  A    S A+  DG++WVWG + RGQLG  ++I  + VP +VE L  + +
Sbjct: 642 GLN--NVVAIAAGDYHSMALKKDGTVWVWGSNIRGQLGR-RNIEFSTVPLKVEKL--DNV 696

Query: 175 VKVSFGWGHALAQTEDGKLFGWGYSAD 201
           V ++ G  H++A  +DG ++ WG   D
Sbjct: 697 VAIAAGDTHSVALKKDGTVWVWGIECD 723



 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 72/266 (27%), Positives = 122/266 (45%), Gaps = 61/266 (22%)

Query: 109 DPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEA 168
           + K ++G +   V ++ A  + + AI DDG++W WG +  GQLG G    ++ +P RV+ 
Sbjct: 33  NSKELQG-ENFKVISSGAGSLHTLAIKDDGTVWAWGYNGFGQLGNGT-YKDSCIPVRVKG 90

Query: 169 LAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQ 228
           L  + +V VS G  H+LA  +DG ++ WG++  G+                  R S+  +
Sbjct: 91  L--KDVVAVSAGTFHSLALKKDGSVWIWGHTNYGQ------------------RKSDVYR 130

Query: 229 EISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSC 288
           + ++    K  K                         +V IA G+D SL +G +G + + 
Sbjct: 131 DFTTPVKVKELK------------------------NIVAIAAGWDFSLAVGSDGSVWAW 166

Query: 289 GSNVYGQLGREKQDMGMFPVDIN--FHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWG 346
           G N +G+LG         PV +      V++S+GL HSLA+    +         + SWG
Sbjct: 167 GINNHGELGIGSLKPSAVPVKVKGLKDVVAVSAGLYHSLALKRDGT---------VWSWG 217

Query: 347 WNRSSQLGRMGPDN----VPLVVEGL 368
           +N   +LG    ++    VP+ V+GL
Sbjct: 218 YNEDGELGNRPTEDYTVSVPVRVKGL 243


>gi|444915391|ref|ZP_21235524.1| BNR repeat domain protein [Cystobacter fuscus DSM 2262]
 gi|444713468|gb|ELW54366.1| BNR repeat domain protein [Cystobacter fuscus DSM 2262]
          Length = 743

 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 116/345 (33%), Positives = 161/345 (46%), Gaps = 69/345 (20%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAW 88
           V ++G  S G LG      G   D   P RV GL S V +   G YHSLA+ ++G+VWAW
Sbjct: 267 VWTWGANSFGQLG-----DGTKSDRLVPVRVQGL-SGVVASDVGSYHSLALRSDGSVWAW 320

Query: 89  GRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKR 148
           G N+  QLG  +  SR+    P +V GL       A +S   S A+G DG++W WG +  
Sbjct: 321 GHNSSGQLGDDSSTSRSV---PVQVRGLSGGMAVTAGSS--HSLAVGSDGTVWAWGSNFS 375

Query: 149 GQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLG 208
           G+ G G     A  P +V+ L G   V V+ G+ H+LA   DG ++ WG +  G++G+  
Sbjct: 376 GERGEGTTNNRA-SPVQVQGLGGG--VAVAAGFNHSLAARSDGSVWAWGSNDSGQLGD-- 430

Query: 209 KALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVE-VV 267
                        R+S S                               P  V+G+  VV
Sbjct: 431 ----------GTTRNSTS-------------------------------PVQVQGLSGVV 449

Query: 268 DIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFHPVSISSGLGHSLAI 327
            +A GFDHSL L  +G + + GSN YGQLG       + PV +    V++++G  HSLA 
Sbjct: 450 AVAAGFDHSLALRSDGSVWAWGSNAYGQLGEGTTTNRLVPVQVLSGVVAVAAGSNHSLA- 508

Query: 328 CEVRSSNVTGGARGIVSWGWNRSSQLGRMGPDN--VPLVVEGLEG 370
             VRS         + +WG N   QLG     N  VP+ V+GL G
Sbjct: 509 --VRSDGT------VWTWGSNLYGQLGDGTTSNRLVPVQVQGLSG 545



 Score =  117 bits (294), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 110/334 (32%), Positives = 168/334 (50%), Gaps = 44/334 (13%)

Query: 56  PTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEG 115
           P +VPGL S V +V+AG  HSLAV ++G VWAWG N++ QLG G    R T   P RV+G
Sbjct: 89  PVQVPGL-SGVVAVAAGSSHSLAVRHDGTVWAWGSNSDGQLGDGTTTMRLT---PVRVQG 144

Query: 116 LDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIV 175
           L  V   AA +S   S A+  DG++W WG +  GQLG G   +  +VP +V  L+G  +V
Sbjct: 145 LSGVVSVAAGSS--YSLAVRSDGTVWAWGSNFSGQLGDGT-TSNRLVPVQVPGLSG--VV 199

Query: 176 KVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLD-------------SNIDR 222
            V+ G  H+LA   DG ++ WG ++ G++G+  K     P+              +    
Sbjct: 200 SVAAGSSHSLAVLSDGSVWAWGANSSGQLGDGTKINRLVPVQVPGLSGVVAVAAGAAHSL 259

Query: 223 SSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVE-VVDIACGFDHSLVLGR 281
           +  SD  + +       +L  +G + ++ +P+      V+G+  VV    G  HSL L  
Sbjct: 260 AVRSDGTVWTWGANSFGQL-GDGTKSDRLVPV-----RVQGLSGVVASDVGSYHSLALRS 313

Query: 282 NGVLLSCGSNVYGQLGREKQDMGMFPVDINFHP--VSISSGLGHSLAICEVRSSNVTGGA 339
           +G + + G N  GQLG +       PV +      +++++G  HSLA+          G+
Sbjct: 314 DGSVWAWGHNSSGQLGDDSSTSRSVPVQVRGLSGGMAVTAGSSHSLAV----------GS 363

Query: 340 RGIV-SWGWNRSSQLGRMGPDN--VPLVVEGLEG 370
            G V +WG N S + G    +N   P+ V+GL G
Sbjct: 364 DGTVWAWGSNFSGERGEGTTNNRASPVQVQGLGG 397



 Score =  114 bits (286), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 109/325 (33%), Positives = 157/325 (48%), Gaps = 28/325 (8%)

Query: 56  PTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEG 115
           P +VPGL S V SV+AG  HSLAV ++G+VWAWG N+  QLG G   +R     P +V G
Sbjct: 189 PVQVPGL-SGVVSVAAGSSHSLAVLSDGSVWAWGANSSGQLGDGTKINRLV---PVQVPG 244

Query: 116 LDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIV 175
           L  V   AA A+   S A+  DG++W WG +  GQLG G   ++ +VP RV+ L+G  +V
Sbjct: 245 LSGVVAVAAGAA--HSLAVRSDGTVWTWGANSFGQLGDGTK-SDRLVPVRVQGLSG--VV 299

Query: 176 KVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSN-------IDRSSESDQ 228
               G  H+LA   DG ++ WG+++ G++G+      S P+          +   S    
Sbjct: 300 ASDVGSYHSLALRSDGSVWAWGHNSSGQLGDDSSTSRSVPVQVRGLSGGMAVTAGSSHSL 359

Query: 229 EISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGV-EVVDIACGFDHSLVLGRNGVLLS 287
            + S     A      G   E        P  V+G+   V +A GF+HSL    +G + +
Sbjct: 360 AVGSDGTVWAWGSNFSGERGEGTTNNRASPVQVQGLGGGVAVAAGFNHSLAARSDGSVWA 419

Query: 288 CGSNVYGQLGREKQDMGMFPVDINFHP--VSISSGLGHSLAICEVRSSNVTGGARGIVSW 345
            GSN  GQLG         PV +      V++++G  HSLA+    S         + +W
Sbjct: 420 WGSNDSGQLGDGTTRNSTSPVQVQGLSGVVAVAAGFDHSLALRSDGS---------VWAW 470

Query: 346 GWNRSSQLGRMGPDNVPLVVEGLEG 370
           G N   QLG     N  + V+ L G
Sbjct: 471 GSNAYGQLGEGTTTNRLVPVQVLSG 495



 Score =  105 bits (262), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 110/334 (32%), Positives = 161/334 (48%), Gaps = 44/334 (13%)

Query: 55  EPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVE 114
            P +V GL   V +V+AG  HSLA  ++G+VWAWG N+  QLG G   +  +   P +V+
Sbjct: 388 SPVQVQGLGGGV-AVAAGFNHSLAARSDGSVWAWGSNDSGQLGDGTTRNSTS---PVQVQ 443

Query: 115 GLDQV-NVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEK 173
           GL  V  V A F     S A+  DGS+W WG +  GQLG G   T  +VP  V+ L+G  
Sbjct: 444 GLSGVVAVAAGFDH---SLALRSDGSVWAWGSNAYGQLGEGT-TTNRLVP--VQVLSG-- 495

Query: 174 IVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLD-------------SNI 220
           +V V+ G  H+LA   DG ++ WG +  G++G+   +    P+              S  
Sbjct: 496 VVAVAAGSNHSLAVRSDGTVWTWGSNLYGQLGDGTTSNRLVPVQVQGLSGVAAVAAGSFH 555

Query: 221 DRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLG 280
             +  SD  + +     + +L  +G    + +P    P L  GV V   A G  HSLV+ 
Sbjct: 556 SLAVHSDGSVWAWGSNSSGEL-GDGTTSNRLVPGR-VPGLSGGVAV---AAGGFHSLVVR 610

Query: 281 RNGVLLSCGSNVYGQLGREKQDMGMFPVDINFHP--VSISSGLGHSLAICEVRSSNVTGG 338
            +G + + GSN +G+LG         PV +      V++ +G  HSLA   VRS      
Sbjct: 611 SDGTVWTWGSNSFGELGDGTTTSRSVPVQVQGLSGVVAVDAGNSHSLA---VRSDGT--- 664

Query: 339 ARGIVSWGWNRSSQL--GRMGPDNVPLVVEGLEG 370
              + +WG+N   QL  G     +VP+ V GL G
Sbjct: 665 ---VWTWGYNSYGQLGDGTTTRRSVPVQVPGLSG 695



 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 98/326 (30%), Positives = 154/326 (47%), Gaps = 48/326 (14%)

Query: 52  DAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPK 111
           ++  P +V GL S V +V+AG  HSLA+ ++G+VWAWG N   QLG G   +R     P 
Sbjct: 435 NSTSPVQVQGL-SGVVAVAAGFDHSLALRSDGSVWAWGSNAYGQLGEGTTTNRLV---PV 490

Query: 112 RVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAG 171
           +V       V A  A    S A+  DG++W WG +  GQLG G   +  +VP +V+ L+G
Sbjct: 491 QV----LSGVVAVAAGSNHSLAVRSDGTVWTWGSNLYGQLGDGT-TSNRLVPVQVQGLSG 545

Query: 172 EKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNL----------------GKALESSP 215
             +  V+ G  H+LA   DG ++ WG ++ G +G+                 G A+ +  
Sbjct: 546 --VAAVAAGSFHSLAVHSDGSVWAWGSNSSGELGDGTTSNRLVPGRVPGLSGGVAVAAGG 603

Query: 216 LDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVE-VVDIACGFD 274
             S + RS  +     S++  +    + +G    + +P+      V+G+  VV +  G  
Sbjct: 604 FHSLVVRSDGTVWTWGSNSFGE----LGDGTTTSRSVPV-----QVQGLSGVVAVDAGNS 654

Query: 275 HSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFHP--VSISSGLGHSLAICEVRS 332
           HSL +  +G + + G N YGQLG         PV +      V++++G  H L    VRS
Sbjct: 655 HSLAVRSDGTVWTWGYNSYGQLGDGTTTRRSVPVQVPGLSGVVAMATGALHPLV---VRS 711

Query: 333 SNVTGGARGIVSWGWNRSSQLGRMGP 358
                    + +WG+N   QLG   P
Sbjct: 712 DGT------VWAWGYNSFGQLGNGSP 731



 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 69/179 (38%), Positives = 98/179 (54%), Gaps = 14/179 (7%)

Query: 28  AVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWA 87
           +V ++G  S G LG      G   +   P RVPGL   V +V+AG +HSL V ++G VW 
Sbjct: 564 SVWAWGSNSSGELG-----DGTTSNRLVPGRVPGLSGGV-AVAAGGFHSLVVRSDGTVWT 617

Query: 88  WGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSK 147
           WG N+  +LG G   SR+    P +V+GL    V A  A    S A+  DG++W WG + 
Sbjct: 618 WGSNSFGELGDGTTTSRSV---PVQVQGLS--GVVAVDAGNSHSLAVRSDGTVWTWGYNS 672

Query: 148 RGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGN 206
            GQLG G   T   VP +V  L+G  +V ++ G  H L    DG ++ WGY++ G++GN
Sbjct: 673 YGQLGDGT-TTRRSVPVQVPGLSG--VVAMATGALHPLVVRSDGTVWAWGYNSFGQLGN 728



 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 98/319 (30%), Positives = 156/319 (48%), Gaps = 39/319 (12%)

Query: 69  VSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASG 128
           ++AG  +SLA+  +G VWA G N+  QLG G   + +    P +V GL  V   AA +S 
Sbjct: 51  LAAGSSYSLALRPDGTVWATGSNDLGQLGDGTTTNHSA---PVQVPGLSGVVAVAAGSS- 106

Query: 129 VVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQT 188
             S A+  DG++W WG +  GQLG G   T  + P RV+ L+G  +V V+ G  ++LA  
Sbjct: 107 -HSLAVRHDGTVWAWGSNSDGQLGDGT-TTMRLTPVRVQGLSG--VVSVAAGSSYSLAVR 162

Query: 189 EDGKLFGWGYSADGRIGNLGKALESSPLD--------SNIDRSSESDQEISSSTI----E 236
            DG ++ WG +  G++G+   +    P+         S    SS S   +S  ++     
Sbjct: 163 SDGTVWAWGSNFSGQLGDGTTSNRLVPVQVPGLSGVVSVAAGSSHSLAVLSDGSVWAWGA 222

Query: 237 KAQKLVSEGMEKEKYMPIIWEPFLVEGVE-VVDIACGFDHSLVLGRNGVLLSCGSNVYGQ 295
            +   + +G +  + +P+      V G+  VV +A G  HSL +  +G + + G+N +GQ
Sbjct: 223 NSSGQLGDGTKINRLVPV-----QVPGLSGVVAVAAGAAHSLAVRSDGTVWTWGANSFGQ 277

Query: 296 LGREKQDMGMFPVDINFHPVSISSGLG--HSLAICEVRSSNVTGGARGIVSWGWNRSSQL 353
           LG   +   + PV +      ++S +G  HSLA+    S         + +WG N S QL
Sbjct: 278 LGDGTKSDRLVPVRVQGLSGVVASDVGSYHSLALRSDGS---------VWAWGHNSSGQL 328

Query: 354 G--RMGPDNVPLVVEGLEG 370
           G       +VP+ V GL G
Sbjct: 329 GDDSSTSRSVPVQVRGLSG 347



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 46/109 (42%), Positives = 61/109 (55%), Gaps = 10/109 (9%)

Query: 56  PTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEG 115
           P +V GL S V +V AG+ HSLAV ++G VW WG N+  QLG G    R+    P +V G
Sbjct: 637 PVQVQGL-SGVVAVDAGNSHSLAVRSDGTVWTWGYNSYGQLGDGTTTRRSV---PVQVPG 692

Query: 116 LDQVNVCAAFASGVVSS-AIGDDGSLWVWGKSKRGQLGLGKDI--TEAI 161
           L  V    A A+G +    +  DG++W WG +  GQLG G  +  T AI
Sbjct: 693 LSGV---VAMATGALHPLVVRSDGTVWAWGYNSFGQLGNGSPLFATTAI 738


>gi|426232148|ref|XP_004010096.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC6 [Ovis aries]
          Length = 992

 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 86/273 (31%), Positives = 134/273 (49%), Gaps = 45/273 (16%)

Query: 28  AVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPS-DVTSVSAGHYHSLAVTNNGAVW 86
            V S GD S+G LG   +  G      +P R+P L +  V  VS G  HSLAV + G V+
Sbjct: 15  TVQSCGDNSRGQLGRKGTPRG-----EQPERIPALETLHVALVSCGKEHSLAVCHKGRVF 69

Query: 87  AWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKS 146
           AWG  +E QLG G L  + T   PK+++ L  + +         S A+ +DG ++ WGK+
Sbjct: 70  AWGAASEGQLGIGEL--KETTFIPKKIKTLADIKIIQVACGHYHSLALSEDGQVFSWGKN 127

Query: 147 KRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGN 206
             GQLGLGK+      P RV +L G  + +V+ G  H+ A +  G  FGWG +  G++  
Sbjct: 128 SHGQLGLGKEFPSQASPQRVRSLEGIPLAQVAAGGAHSFALSLSGTSFGWGSNNAGQLAL 187

Query: 207 LGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEV 266
            G    ++P+                                ++Y P++     ++ + V
Sbjct: 188 SGN---NAPV--------------------------------QRYKPVLVGA--LKTLSV 210

Query: 267 VDIACGFDHSLVLGRNGVLLSCGSNVYGQLGRE 299
           V I+CG++H+ VL ++G + + G N YGQLG +
Sbjct: 211 VFISCGYEHTAVLTQDGKVFTFGDNSYGQLGHD 243



 Score = 87.0 bits (214), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 60/191 (31%), Positives = 101/191 (52%), Gaps = 11/191 (5%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPS-DVTSVSAGHYHSLAVTNNGAVWA 87
           V ++G  S+G LG+      +    + P ++  L    +  V+ GHYHSLA++ +G V++
Sbjct: 68  VFAWGAASEGQLGI----GELKETTFIPKKIKTLADIKIIQVACGHYHSLALSEDGQVFS 123

Query: 88  WGRNNEVQLGRGA-LESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKS 146
           WG+N+  QLG G    S+A+   P+RV  L+ + +    A G  S A+   G+ + WG +
Sbjct: 124 WGKNSHGQLGLGKEFPSQAS---PQRVRSLEGIPLAQVAAGGAHSFALSLSGTSFGWGSN 180

Query: 147 KRGQLGLGKD--ITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRI 204
             GQL L  +    +   P  V AL    +V +S G+ H    T+DGK+F +G ++ G++
Sbjct: 181 NAGQLALSGNNAPVQRYKPVLVGALKTLSVVFISCGYEHTAVLTQDGKVFTFGDNSYGQL 240

Query: 205 GNLGKALESSP 215
           G+   A +  P
Sbjct: 241 GHDSTAEKRGP 251



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 61/236 (25%), Positives = 102/236 (43%), Gaps = 63/236 (26%)

Query: 137 DGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGW 196
           DG++   G + RGQLG  K       P R+ AL    +  VS G  H+LA    G++F W
Sbjct: 13  DGTVQSCGDNSRGQLG-RKGTPRGEQPERIPALETLHVALVSCGKEHSLAVCHKGRVFAW 71

Query: 197 GYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIW 256
           G +++G++G +G+  E++ +   I   ++                               
Sbjct: 72  GAASEGQLG-IGELKETTFIPKKIKTLAD------------------------------- 99

Query: 257 EPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFHPV- 315
                  ++++ +ACG  HSL L  +G + S G N +GQLG  K+    FP   +   V 
Sbjct: 100 -------IKIIQVACGHYHSLALSEDGQVFSWGKNSHGQLGLGKE----FPSQASPQRVR 148

Query: 316 --------SISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPDNVPL 363
                    +++G  HS A+      +++G + G   WG N + QL   G +N P+
Sbjct: 149 SLEGIPLAQVAAGGAHSFAL------SLSGTSFG---WGSNNAGQLALSG-NNAPV 194



 Score = 43.1 bits (100), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 41/88 (46%), Gaps = 15/88 (17%)

Query: 272 GFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDI----NFHPVSISSGLGHSLAI 327
           G  HSL+L  +G + SCG N  GQLGR+    G  P  I      H   +S G  HSLA+
Sbjct: 3   GEHHSLLLLSDGTVQSCGDNSRGQLGRKGTPRGEQPERIPALETLHVALVSCGKEHSLAV 62

Query: 328 CEVRSSNVTGGARG-IVSWGWNRSSQLG 354
           C           +G + +WG     QLG
Sbjct: 63  CH----------KGRVFAWGAASEGQLG 80



 Score = 41.6 bits (96), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 34/109 (31%), Positives = 51/109 (46%), Gaps = 4/109 (3%)

Query: 20  FMRSASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPS-DVTSVSAGHYHSLA 78
           F  S SGT   SFG GS  A  L  S        Y+P  V  L +  V  +S G+ H+  
Sbjct: 166 FALSLSGT---SFGWGSNNAGQLALSGNNAPVQRYKPVLVGALKTLSVVFISCGYEHTAV 222

Query: 79  VTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFAS 127
           +T +G V+ +G N+  QLG  +   +      +R+EGL     C ++ +
Sbjct: 223 LTQDGKVFTFGDNSYGQLGHDSTAEKRGPQLVERIEGLVSQIDCGSYHT 271


>gi|326432295|gb|EGD77865.1| ITCH protein [Salpingoeca sp. ATCC 50818]
          Length = 1207

 Score =  122 bits (305), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 100/329 (30%), Positives = 161/329 (48%), Gaps = 37/329 (11%)

Query: 57  TRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGL 116
           T VP L  ++  V+ G+YHSLA+T +G V+  G+N+  QLGR   E +  W    RV  L
Sbjct: 28  TLVPSLEQELAFVATGYYHSLAITRSGTVYTTGKNDRRQLGRSGDEHK--W---ARVTPL 82

Query: 117 DQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITE--AIVPSRVEALAGEKI 174
           + +   A       S  +   G ++ WG  +RGQLGLG++  E  + VP  V+ L    +
Sbjct: 83  ETITAVAGAVGLDFSVVVDSTGKVYTWGGGERGQLGLGREAMETGSRVPRPVKGLGNAFV 142

Query: 175 VKVSFGWGHALAQTEDGKLFGWGYSADGRIGN---------------LGKALESSPLDSN 219
           + V+ G  H LA T DG++F WG  ADG++G+                GK + S    S 
Sbjct: 143 ISVACGTRHCLALTRDGRVFSWGEGADGQLGDGQFVSRHSPEVIADLRGKGVVSVAAGST 202

Query: 220 IDRS-SESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLV 278
              + + +DQ  +  +  K Q  +  G    ++ P +     ++G +V  +  G  H+L 
Sbjct: 203 YSLAVTGADQVYAFGSNSKGQ--LGVGDTTARFRPTLVR--FLDGKQVCHVTAGDFHTLA 258

Query: 279 LGRNGVLLSCGSNVYGQLGR-EKQDMGMFPVDINF-----HPVSISSGLGHSLAICEVRS 332
             R G L + GSN +GQLG   + D    P +I         + +S+G  H++A+  +R+
Sbjct: 259 RTRTGHLYAWGSNQWGQLGLGSEADSVAAPTEITHILEIGRVLEVSAGRRHTVAL--IRT 316

Query: 333 SNVTGGARGI-VSWGWNRSSQLGRMGPDN 360
              TG    + V++G N + QLG + PD+
Sbjct: 317 VTETGAQATVAVAFGANNTGQLG-LDPDH 344


>gi|444919546|ref|ZP_21239558.1| BNR repeat domain protein [Cystobacter fuscus DSM 2262]
 gi|444708349|gb|ELW49424.1| BNR repeat domain protein [Cystobacter fuscus DSM 2262]
          Length = 494

 Score =  121 bits (304), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 112/345 (32%), Positives = 159/345 (46%), Gaps = 76/345 (22%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAW 88
           V ++G  + G LG  T+      D   P +V GL S V +V+AGH+HSLAV N+G VW W
Sbjct: 219 VWAWGANASGQLGDGTTT-----DRLVPVQVQGL-SGVVAVAAGHHHSLAVRNDGTVWGW 272

Query: 89  GRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKR 148
           GRN+  QLG+G++        P +V+GL  V   A  A    S A+G DG++W  G +  
Sbjct: 273 GRNDSNQLGKGSMRLLV----PAQVQGLSAV--VAVAAGDTHSLAVGSDGTVWAVGSNNN 326

Query: 149 GQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLG 208
           GQLG G   T  +VP  V  L+G  +V V+    H+LA   DG ++ WGY++ G++G   
Sbjct: 327 GQLGDGT-TTYRLVP--VPVLSG--VVSVAANDYHSLAVRSDGTVWAWGYNSTGQLG--- 378

Query: 209 KALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGV-EVV 267
                                              +G    + +P+      V G+ EVV
Sbjct: 379 -----------------------------------DGTTTTRLVPV-----QVSGLSEVV 398

Query: 268 DIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFHPVS----ISSGLGH 323
            +  G  HSL +  +G     GSN YGQLG         PV +    +S    ++SG  H
Sbjct: 399 SVVAGGYHSLAVRSDGSAWDWGSNAYGQLGDGSTT--YLPVPVRVQQLSGVGAVASGSSH 456

Query: 324 SLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPDNVPLVVEGL 368
           SLA+   RS         + +WG+N   QLG   P N   V+  L
Sbjct: 457 SLAL---RSDGT------VWTWGYNSFGQLGNGPPLNTATVIRSL 492



 Score =  109 bits (272), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 116/385 (30%), Positives = 172/385 (44%), Gaps = 81/385 (21%)

Query: 48  GVGGDAYEPTRVP----GLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALES 103
           G G   Y P  VP    GL S+V +V AG  HSLAV ++G VWAWG N   QLG     S
Sbjct: 29  GDGTTTYSPVPVPVQVQGL-SEVVAVDAGSSHSLAVRSDGTVWAWGSNASGQLGDETTIS 87

Query: 104 RATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVP 163
           R+T   P +V GL  V   AA +S V+  A+  DG++W WG +  GQ G G     A+ P
Sbjct: 88  RST---PVQVLGLSGVLFVAAGSSHVL--ALRYDGTVWAWGSNSSGQRGDGTTNNRAL-P 141

Query: 164 SRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIG-----NLGKALESSPLDS 218
            + + L+G  ++ V+ G  H+LA   DG  + WG +A G++G     N  + ++   L  
Sbjct: 142 VQAQGLSG--VMAVAAGDNHSLAVRSDGSAWAWGSNASGQLGEGTTSNRPEPVQVQGLSG 199

Query: 219 NIDRSSESDQEI---SSSTI----EKAQKLVSEGMEKEKYMPI----------------- 254
            +  ++ S   +   S  T+      A   + +G   ++ +P+                 
Sbjct: 200 VVAVAAGSAHSLAVRSDGTVWAWGANASGQLGDGTTTDRLVPVQVQGLSGVVAVAAGHHH 259

Query: 255 ---------IWE------------------PFLVEGVE-VVDIACGFDHSLVLGRNGVLL 286
                    +W                   P  V+G+  VV +A G  HSL +G +G + 
Sbjct: 260 SLAVRNDGTVWGWGRNDSNQLGKGSMRLLVPAQVQGLSAVVAVAAGDTHSLAVGSDGTVW 319

Query: 287 SCGSNVYGQLGREKQDMGMFPVDINFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWG 346
           + GSN  GQLG       + PV +    VS+++   HSLA   VRS         + +WG
Sbjct: 320 AVGSNNNGQLGDGTTTYRLVPVPVLSGVVSVAANDYHSLA---VRSDGT------VWAWG 370

Query: 347 WNRSSQLGRMGPDN--VPLVVEGLE 369
           +N + QLG        VP+ V GL 
Sbjct: 371 YNSTGQLGDGTTTTRLVPVQVSGLS 395


>gi|295696487|ref|YP_003589725.1| S-layer protein [Kyrpidia tusciae DSM 2912]
 gi|295412089|gb|ADG06581.1| S-layer domain protein [Kyrpidia tusciae DSM 2912]
          Length = 1423

 Score =  120 bits (301), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 99/303 (32%), Positives = 148/303 (48%), Gaps = 32/303 (10%)

Query: 68  SVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFAS 127
           +VSAG  HSL +T++  VWAWG N   QLG G    R T   P   +GL  V   +A  S
Sbjct: 74  AVSAGGSHSLVLTSDQTVWAWGDNTNGQLGDGTTTGRQT---PTPAQGLPSVAQVSAGES 130

Query: 128 GVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVK-VSFGWGHALA 186
              S A+ DDG ++ WG +  GQLG G    ++  P +V+ LA +  +K V+ G  H+LA
Sbjct: 131 H--SLALTDDGRVFAWGLNSSGQLGDGT-TADSRTPVQVQGLATDSTIKVVAAGGNHSLA 187

Query: 187 QTEDGKLFGWGYSADGRIGNLGKALESSP-----LDSNIDRSS---------ESDQEISS 232
            T DG++F WG ++ G++GN      S P     L +N+   +          SD  I +
Sbjct: 188 LTSDGRVFAWGKNSSGQLGNNSTVDSSIPVQVQGLPANVTAVAAGGNHSLALTSDGRIYA 247

Query: 233 STIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNV 292
             +  + +L  +G       P++    L  G + V ++ G DHSL L ++G + + G N 
Sbjct: 248 WGLNSSGQL-GDGTTSNSSTPVLVA-GLPAGSKPVAVSAGKDHSLALMQDGTVYAWGGNS 305

Query: 293 YGQLGREKQDMGMFPVDINFHPVSISSGLGHSLAICEVRSSNVTGGARGIV-SWGWNRSS 351
           YGQLG         PV +        +GL +  A+    S ++   + G V +WG N S 
Sbjct: 306 YGQLGNGTTTASEMPVQV--------TGLANVTAVSAGGSDSLALTSDGYVYAWGLNSSG 357

Query: 352 QLG 354
           QLG
Sbjct: 358 QLG 360



 Score = 95.9 bits (237), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 73/210 (34%), Positives = 117/210 (55%), Gaps = 24/210 (11%)

Query: 10  NHVNVLTS--RIFMRSASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVT 67
           NH   LTS  R+F          ++G  S G LG  +++     D+  P +V GLP++VT
Sbjct: 183 NHSLALTSDGRVF----------AWGKNSSGQLGNNSTV-----DSSIPVQVQGLPANVT 227

Query: 68  SVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFAS 127
           +V+AG  HSLA+T++G ++AWG N+  QLG G   + +T   P  V GL   +   A ++
Sbjct: 228 AVAAGGNHSLALTSDGRIYAWGLNSSGQLGDGTTSNSST---PVLVAGLPAGSKPVAVSA 284

Query: 128 GVVSS-AIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALA 186
           G   S A+  DG+++ WG +  GQLG G   T + +P +V  LA   +  VS G   +LA
Sbjct: 285 GKDHSLALMQDGTVYAWGGNSYGQLGNGT-TTASEMPVQVTGLA--NVTAVSAGGSDSLA 341

Query: 187 QTEDGKLFGWGYSADGRIGNLGKALESSPL 216
            T DG ++ WG ++ G++G+   +  ++P+
Sbjct: 342 LTSDGYVYAWGLNSSGQLGDGTTSNRNTPV 371


>gi|312792299|ref|YP_004025222.1| regulator of chromosome condensation rcc1 [Caldicellulosiruptor
           kristjanssonii 177R1B]
 gi|312179439|gb|ADQ39609.1| regulator of chromosome condensation RCC1 [Caldicellulosiruptor
           kristjanssonii 177R1B]
          Length = 754

 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 108/348 (31%), Positives = 172/348 (49%), Gaps = 58/348 (16%)

Query: 50  GGDAYEPT--RVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATW 107
           G D Y P   +V GL  DV +++AG YHSLA+  +G VWAWG N   QLG G  E     
Sbjct: 232 GADEYSPVPVQVEGL-KDVVAIAAGRYHSLALKKDGTVWAWGNNYYGQLGNGKSEDSY-- 288

Query: 108 NDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAI-VPSRV 166
            DP +V+ L  V   AA  +   S A+  DG++W WG ++ GQ  LG  I+E + VP + 
Sbjct: 289 -DPVQVKNLKDVVAIAAGENH--SLALKKDGTIWAWGDNEWGQ--LGNSISEKLCVPVQF 343

Query: 167 EALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSES 226
           ++L  + +V ++ G  H+LA  +DG ++ WG +  G++GN       + +DS +      
Sbjct: 344 KSL--KDVVAIAAGCEHSLALKKDGTVWSWGNNYYGQLGN------GNSIDSYVPVQVRG 395

Query: 227 DQEISSSTIEKAQKL------------------VSEGMEKEKYMPIIWEPFLVEGV-EVV 267
            +++ +     A  L                  +  G  K  ++P+      V+G+ +VV
Sbjct: 396 LKDVVAIATGNAHSLALKKDGTVWAWGNNEFGQLGNGTNKSSFVPV-----QVKGLKDVV 450

Query: 268 DIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMF---PVDIN--FHPVSISSGLG 322
            IA G DHSL   ++G + + G+N +GQLG      G +   PV +      V++++G  
Sbjct: 451 AIAAGSDHSLAFKKDGTVWAWGNNEFGQLGNGSGGYGQYYAVPVQVKGLKDVVAVAAGSV 510

Query: 323 HSLAICEVRSSNVTGGARGIVSWGWNRSSQLGR-MGPDNVPLVVEGLE 369
           HSLA+ +  +         I +WG N    LG  +    VP+ V+GL+
Sbjct: 511 HSLALKKDGT---------IWAWGSNYHGLLGNDIERSFVPVQVKGLK 549



 Score =  115 bits (287), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 113/362 (31%), Positives = 182/362 (50%), Gaps = 46/362 (12%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAW 88
           V S+G+   G LG   S+     D+Y P +V GL  DV +++ G+ HSLA+  +G VWAW
Sbjct: 368 VWSWGNNYYGQLGNGNSI-----DSYVPVQVRGL-KDVVAIATGNAHSLALKKDGTVWAW 421

Query: 89  GRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKR 148
           G N   QLG G  +S      P +V+GL  V   AA +    S A   DG++W WG ++ 
Sbjct: 422 GNNEFGQLGNGTNKSSFV---PVQVKGLKDVVAIAAGSDH--SLAFKKDGTVWAWGNNEF 476

Query: 149 GQLGLGKDI--TEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGN 206
           GQLG G         VP +V+ L  + +V V+ G  H+LA  +DG ++ WG +  G +GN
Sbjct: 477 GQLGNGSGGYGQYYAVPVQVKGL--KDVVAVAAGSVHSLALKKDGTIWAWGSNYHGLLGN 534

Query: 207 -LGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWE-------- 257
            + ++     +    D  + +     S  ++K   + + G   E +  ++ E        
Sbjct: 535 DIERSFVPVQVKGLKDVVAIAAGSNHSLVLKKDGTVWAWG---EVWFDLLNENSRLVYSS 591

Query: 258 -PFLVEGV-EVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGRE-KQDMGMFPVDIN--F 312
            P  ++G+ +VV IA G  HSL L ++G + + G N +GQLG   ++   + PV +    
Sbjct: 592 VPVQIKGLKDVVAIAAGEHHSLGLKKDGTVWAWGDNFFGQLGNSPREKYSLVPVQVKGLK 651

Query: 313 HPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGR--MGPDN---VPLVVEG 367
             ++I++G  HSLAI +  +         + +WG N + QLG    G D    VP+ V+G
Sbjct: 652 DILAIATGEWHSLAIKKDGT---------VWAWGENSTGQLGNETSGKDKYSYVPVQVKG 702

Query: 368 LE 369
           ++
Sbjct: 703 IK 704



 Score =  111 bits (278), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 101/318 (31%), Positives = 164/318 (51%), Gaps = 40/318 (12%)

Query: 55  EPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVE 114
           E T +  L +++  ++AG+YHSLA+  +G VWAWG N+  Q   G  ES      P +V+
Sbjct: 37  ETTLLSKLENNIIQIAAGNYHSLALKGDGTVWAWGWNHWGQC--GTEESSII---PVKVK 91

Query: 115 GLDQVNVCAAFASGVVSS-AIGDDGSLWVWGKSKRGQLGLGKDITE-AIVPSRVEALAGE 172
           GL  V    A A+G   S  +  DG++W WG +K GQLG  +D  E +IVP +V+ L  +
Sbjct: 92  GLKDV---VAIAAGRYHSLTLKKDGTVWAWGSNKDGQLG-NRDAGEYSIVPVQVKGL--K 145

Query: 173 KIVKVSFGWGHALAQTEDGKLFGWGYSA-----DGRIGNLGKALESSPLDSNIDRSSESD 227
            +V ++ G G++L   +DG ++ WG +      DG   +     +   L   +  ++  D
Sbjct: 146 DVVAIAAGDGYSLGLKKDGTVWCWGLNESIQVIDGSNKDFSVPFQIKGLKDVVAIAAGKD 205

Query: 228 QEIS-----SSTIEKAQKLVSEGMEK--EKYMPIIWEPFLVEGV-EVVDIACGFDHSLVL 279
             ++     +  + + +    E + +  ++Y P+   P  VEG+ +VV IA G  HSL L
Sbjct: 206 YSLALKKDGTVWMWEYKYNYYEQLRRGADEYSPV---PVQVEGLKDVVAIAAGRYHSLAL 262

Query: 280 GRNGVLLSCGSNVYGQLGREKQDMGMFPVDI-NFHP-VSISSGLGHSLAICEVRSSNVTG 337
            ++G + + G+N YGQLG  K +    PV + N    V+I++G  HSLA+ +  +     
Sbjct: 263 KKDGTVWAWGNNYYGQLGNGKSEDSYDPVQVKNLKDVVAIAAGENHSLALKKDGT----- 317

Query: 338 GARGIVSWGWNRSSQLGR 355
               I +WG N   QLG 
Sbjct: 318 ----IWAWGDNEWGQLGN 331



 Score = 89.0 bits (219), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 62/163 (38%), Positives = 96/163 (58%), Gaps = 13/163 (7%)

Query: 56  PTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEG 115
           P ++ GL  DV +++AG +HSL +  +G VWAWG N   QLG    E  +    P +V+G
Sbjct: 593 PVQIKGL-KDVVAIAAGEHHSLGLKKDGTVWAWGDNFFGQLGNSPREKYSL--VPVQVKG 649

Query: 116 LDQVNVCAAFASGVVSS-AIGDDGSLWVWGKSKRGQLG---LGKDITEAIVPSRVEALAG 171
           L  +    A A+G   S AI  DG++W WG++  GQLG    GKD   + VP +V+ +  
Sbjct: 650 LKDI---LAIATGEWHSLAIKKDGTVWAWGENSTGQLGNETSGKD-KYSYVPVQVKGI-- 703

Query: 172 EKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESS 214
           + ++ +S G  H+LA  +DG ++GWG +A G++GN G  + S+
Sbjct: 704 KDVLAISAGSYHSLALKKDGTVWGWGANARGQLGNGGAGVYST 746



 Score = 88.2 bits (217), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 94/334 (28%), Positives = 146/334 (43%), Gaps = 77/334 (23%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAW 88
           V ++G+   G LG      G    ++ P +V GL  DV +++AG  HSLA   +G VWAW
Sbjct: 418 VWAWGNNEFGQLG-----NGTNKSSFVPVQVKGL-KDVVAIAAGSDHSLAFKKDGTVWAW 471

Query: 89  GRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKR 148
           G N   QLG G+      +  P +V+GL   +V A  A  V S A+  DG++W WG +  
Sbjct: 472 GNNEFGQLGNGSGGYGQYYAVPVQVKGLK--DVVAVAAGSVHSLALKKDGTIWAWGSNYH 529

Query: 149 GQLGLGKDITEAIVPSRVEAL-------AG------------------------------ 171
           G LG   DI  + VP +V+ L       AG                              
Sbjct: 530 GLLG--NDIERSFVPVQVKGLKDVVAIAAGSNHSLVLKKDGTVWAWGEVWFDLLNENSRL 587

Query: 172 ------------EKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGK---ALESSPL 216
                       + +V ++ G  H+L   +DG ++ WG +  G++GN  +   +L    +
Sbjct: 588 VYSSVPVQIKGLKDVVAIAAGEHHSLGLKKDGTVWAWGDNFFGQLGNSPREKYSLVPVQV 647

Query: 217 DSNIDRSSESDQEISSSTIEK-----------AQKLVSEGMEKEKYMPIIWEPFLVEGV- 264
               D  + +  E  S  I+K             +L +E   K+KY  +   P  V+G+ 
Sbjct: 648 KGLKDILAIATGEWHSLAIKKDGTVWAWGENSTGQLGNETSGKDKYSYV---PVQVKGIK 704

Query: 265 EVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGR 298
           +V+ I+ G  HSL L ++G +   G+N  GQLG 
Sbjct: 705 DVLAISAGSYHSLALKKDGTVWGWGANARGQLGN 738



 Score = 67.8 bits (164), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 42/111 (37%), Positives = 61/111 (54%), Gaps = 3/111 (2%)

Query: 56  PTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEG 115
           P +V GL  D+ +++ G +HSLA+  +G VWAWG N+  QLG            P +V+G
Sbjct: 644 PVQVKGL-KDILAIATGEWHSLAIKKDGTVWAWGENSTGQLGNETSGKDKYSYVPVQVKG 702

Query: 116 LDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRV 166
           +   +V A  A    S A+  DG++W WG + RGQLG G     + VP +V
Sbjct: 703 IK--DVLAISAGSYHSLALKKDGTVWGWGANARGQLGNGGAGVYSTVPVQV 751



 Score = 55.5 bits (132), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 33/71 (46%), Positives = 43/71 (60%), Gaps = 3/71 (4%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAW 88
           V ++G+ S G LG  TS  G    +Y P +V G+  DV ++SAG YHSLA+  +G VW W
Sbjct: 672 VWAWGENSTGQLGNETS--GKDKYSYVPVQVKGI-KDVLAISAGSYHSLALKKDGTVWGW 728

Query: 89  GRNNEVQLGRG 99
           G N   QLG G
Sbjct: 729 GANARGQLGNG 739



 Score = 45.8 bits (107), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 39/118 (33%), Positives = 63/118 (53%), Gaps = 15/118 (12%)

Query: 258 PFLVEGV-EVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLG-REKQDMGMFPVDIN--FH 313
           P  V+G+ +VV IA G  HSL L ++G + + GSN  GQLG R+  +  + PV +     
Sbjct: 87  PVKVKGLKDVVAIAAGRYHSLTLKKDGTVWAWGSNKDGQLGNRDAGEYSIVPVQVKGLKD 146

Query: 314 PVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQL--GRMGPDNVPLVVEGLE 369
            V+I++G G+SL + +  +         +  WG N S Q+  G     +VP  ++GL+
Sbjct: 147 VVAIAAGDGYSLGLKKDGT---------VWCWGLNESIQVIDGSNKDFSVPFQIKGLK 195



 Score = 41.6 bits (96), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 35/108 (32%), Positives = 52/108 (48%), Gaps = 14/108 (12%)

Query: 266 VVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFHPVSISSGLGHSL 325
           ++ IA G  HSL L  +G + + G N +GQ G E+    + PV +         GL   +
Sbjct: 48  IIQIAAGNYHSLALKGDGTVWAWGWNHWGQCGTEESS--IIPVKV--------KGLKDVV 97

Query: 326 AICEVRSSNVTGGARGIV-SWGWNRSSQLGRMGPDN---VPLVVEGLE 369
           AI   R  ++T    G V +WG N+  QLG         VP+ V+GL+
Sbjct: 98  AIAAGRYHSLTLKKDGTVWAWGSNKDGQLGNRDAGEYSIVPVQVKGLK 145


>gi|218201187|gb|EEC83614.1| hypothetical protein OsI_29322 [Oryza sativa Indica Group]
          Length = 395

 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 66/166 (39%), Positives = 100/166 (60%), Gaps = 4/166 (2%)

Query: 56  PTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEG 115
           P RV GL  +V  ++ G +H+LA+T +G +WAWG N   QLG G  + R   + P RVEG
Sbjct: 196 PVRVQGL-ENVKVIAVGAFHNLALTEDGILWAWGNNEYGQLGTGDTQPR---SQPIRVEG 251

Query: 116 LDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIV 175
           L  +++    A G  S+A+  +G ++ WG+ + G+LG G D +  +VP +VE LAGE I+
Sbjct: 252 LSDLSLVDIAAGGWHSTALTKEGEVYAWGRGEHGRLGFGDDKSSHMVPQKVELLAGEDII 311

Query: 176 KVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNID 221
           +VS G  H++A T DG++F +G    GR+G   K     P++  ID
Sbjct: 312 QVSCGGTHSVALTRDGRMFSYGRGDHGRLGYGRKVTTGHPMEVPID 357



 Score = 92.8 bits (229), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 76/257 (29%), Positives = 121/257 (47%), Gaps = 51/257 (19%)

Query: 66  VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAF 125
           V  V+AG  HS+ +T +G VW WG+        G ++  +T   P RV+GL+ V V A  
Sbjct: 159 VRQVAAGGTHSVVLTQDGHVWTWGQ----PWPPGDIKQIST---PVRVQGLENVKVIAVG 211

Query: 126 ASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHAL 185
           A    + A+ +DG LW WG ++ GQLG G D      P RVE L+   +V ++ G  H+ 
Sbjct: 212 A--FHNLALTEDGILWAWGNNEYGQLGTG-DTQPRSQPIRVEGLSDLSLVDIAAGGWHST 268

Query: 186 AQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEG 245
           A T++G+++ WG    GR+G  G                           +K+  +V + 
Sbjct: 269 ALTKEGEVYAWGRGEHGRLG-FGD--------------------------DKSSHMVPQK 301

Query: 246 MEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGM 305
           +E            L+ G +++ ++CG  HS+ L R+G + S G   +G+LG  ++    
Sbjct: 302 VE------------LLAGEDIIQVSCGGTHSVALTRDGRMFSYGRGDHGRLGYGRKVTTG 349

Query: 306 FP--VDINFHPVSISSG 320
            P  V I+  P   S G
Sbjct: 350 HPMEVPIDLPPPGTSGG 366



 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 94/313 (30%), Positives = 138/313 (44%), Gaps = 41/313 (13%)

Query: 84  AVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVW 143
           AV AWG   + QLG G  E    W   + V  LD + V A  A    S AI  DG L+ W
Sbjct: 12  AVLAWGSGEDGQLGMGGYEEE-DWA--RGVAALDALAVSAVVAGSRNSLAICADGRLFTW 68

Query: 144 GKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGR 203
           G ++RG LG   +      P+ V+ALAG  IV+ + G  H LA  + G+ + WG +  G+
Sbjct: 69  GWNQRGTLGHPPETKTESSPAPVDALAGVSIVQAAIGGWHCLAVDDKGRAYAWGGNEYGQ 128

Query: 204 IGNLGKALESSPLDSNIDRSSESDQEISSSTIE--KAQKLVSEGMEK------------- 248
            G      E +    +  R+   D  I        K +++ + G                
Sbjct: 129 CG------EEAERKEDGTRALRRDIPIPQRCAPKLKVRQVAAGGTHSVVLTQDGHVWTWG 182

Query: 249 EKYMP----IIWEPFLVEGVEVVD-IACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDM 303
           + + P     I  P  V+G+E V  IA G  H+L L  +G+L + G+N YGQLG      
Sbjct: 183 QPWPPGDIKQISTPVRVQGLENVKVIAVGAFHNLALTEDGILWAWGNNEYGQLGTGDTQP 242

Query: 304 GMFPVDI----NFHPVSISSGLGHSLAICEVRSSNVTG-GARGIVSWGWNRSSQLGRMGP 358
              P+ +    +   V I++G  HS A+ +       G G  G + +G ++SS +     
Sbjct: 243 RSQPIRVEGLSDLSLVDIAAGGWHSTALTKEGEVYAWGRGEHGRLGFGDDKSSHM----- 297

Query: 359 DNVPLVVEGLEGE 371
             VP  VE L GE
Sbjct: 298 --VPQKVELLAGE 308


>gi|115476524|ref|NP_001061858.1| Os08g0430700 [Oryza sativa Japonica Group]
 gi|38175475|dbj|BAD01172.1| putative UVB-resistance protein UVR8 [Oryza sativa Japonica Group]
 gi|113623827|dbj|BAF23772.1| Os08g0430700 [Oryza sativa Japonica Group]
 gi|215734996|dbj|BAG95718.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|222640598|gb|EEE68730.1| hypothetical protein OsJ_27407 [Oryza sativa Japonica Group]
          Length = 395

 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 66/166 (39%), Positives = 100/166 (60%), Gaps = 4/166 (2%)

Query: 56  PTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEG 115
           P RV GL  +V  ++ G +H+LA+T +G +WAWG N   QLG G  + R   + P RVEG
Sbjct: 196 PVRVQGL-ENVKVIAVGAFHNLALTEDGILWAWGNNEYGQLGTGDTQPR---SQPIRVEG 251

Query: 116 LDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIV 175
           L  +++    A G  S+A+  +G ++ WG+ + G+LG G D +  +VP +VE LAGE I+
Sbjct: 252 LSDLSLVDIAAGGWHSTALTKEGEVYAWGRGEHGRLGFGDDKSSHMVPQKVELLAGEDII 311

Query: 176 KVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNID 221
           +VS G  H++A T DG++F +G    GR+G   K     P++  ID
Sbjct: 312 QVSCGGTHSVALTRDGRMFSYGRGDHGRLGYGRKVTTGHPMEVPID 357



 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 76/257 (29%), Positives = 121/257 (47%), Gaps = 51/257 (19%)

Query: 66  VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAF 125
           V  V+AG  HS+ +T +G VW WG+        G ++  +T   P RV+GL+ V V A  
Sbjct: 159 VRQVAAGGTHSVVLTQDGHVWTWGQ----PWPPGDIKQIST---PVRVQGLENVKVIAVG 211

Query: 126 ASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHAL 185
           A    + A+ +DG LW WG ++ GQLG G D      P RVE L+   +V ++ G  H+ 
Sbjct: 212 A--FHNLALTEDGILWAWGNNEYGQLGTG-DTQPRSQPIRVEGLSDLSLVDIAAGGWHST 268

Query: 186 AQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEG 245
           A T++G+++ WG    GR+G  G                           +K+  +V + 
Sbjct: 269 ALTKEGEVYAWGRGEHGRLG-FGD--------------------------DKSSHMVPQK 301

Query: 246 MEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGM 305
           +E            L+ G +++ ++CG  HS+ L R+G + S G   +G+LG  ++    
Sbjct: 302 VE------------LLAGEDIIQVSCGGTHSVALTRDGRMFSYGRGDHGRLGYGRKVTTG 349

Query: 306 FP--VDINFHPVSISSG 320
            P  V I+  P   S G
Sbjct: 350 HPMEVPIDLPPPGTSGG 366



 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 94/313 (30%), Positives = 138/313 (44%), Gaps = 41/313 (13%)

Query: 84  AVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVW 143
           AV AWG   + QLG G  E    W   + V  LD + V A  A    S AI  DG L+ W
Sbjct: 12  AVLAWGSGEDGQLGMGGYEEE-DWA--RGVAALDALAVSAVVAGSRNSLAICADGRLFTW 68

Query: 144 GKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGR 203
           G ++RG LG   +      P+ V+ALAG  IV+ + G  H LA  + G+ + WG +  G+
Sbjct: 69  GWNQRGTLGHPPETKTESSPAPVDALAGVSIVQAAIGGWHCLAVDDKGRAYAWGGNEYGQ 128

Query: 204 IGNLGKALESSPLDSNIDRSSESDQEISSSTIE--KAQKLVSEGMEK------------- 248
            G      E +    +  R+   D  I        K +++ + G                
Sbjct: 129 CG------EEAERKEDGTRALRRDIPIPQGCAPKLKVRQVAAGGTHSVVLTQDGHVWTWG 182

Query: 249 EKYMP----IIWEPFLVEGVEVVD-IACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDM 303
           + + P     I  P  V+G+E V  IA G  H+L L  +G+L + G+N YGQLG      
Sbjct: 183 QPWPPGDIKQISTPVRVQGLENVKVIAVGAFHNLALTEDGILWAWGNNEYGQLGTGDTQP 242

Query: 304 GMFPVDI----NFHPVSISSGLGHSLAICEVRSSNVTG-GARGIVSWGWNRSSQLGRMGP 358
              P+ +    +   V I++G  HS A+ +       G G  G + +G ++SS +     
Sbjct: 243 RSQPIRVEGLSDLSLVDIAAGGWHSTALTKEGEVYAWGRGEHGRLGFGDDKSSHM----- 297

Query: 359 DNVPLVVEGLEGE 371
             VP  VE L GE
Sbjct: 298 --VPQKVELLAGE 308


>gi|442317911|ref|YP_007357932.1| RCC1 repeat-containing protein [Myxococcus stipitatus DSM 14675]
 gi|441485553|gb|AGC42248.1| RCC1 repeat-containing protein [Myxococcus stipitatus DSM 14675]
          Length = 1451

 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 112/354 (31%), Positives = 173/354 (48%), Gaps = 37/354 (10%)

Query: 28  AVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWA 87
           +V ++G  + G LG  T+      + + P RVPGL S V SVSA  +HS A+ ++G VW 
Sbjct: 419 SVWTWGRNTNGQLGDGTTT-----ERHLPVRVPGL-SGVVSVSASGHHSFALRSDGTVWG 472

Query: 88  WGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSK 147
           WGRN + Q+G G  + RA+   P RVEGL  V   A+  S +V  A+  DG++W WG + 
Sbjct: 473 WGRNAQGQMGDGTTKDRAS---PARVEGLSSVKALASGGSHMV--ALRTDGTVWTWGYNG 527

Query: 148 RGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNL 207
            GQLG G   T+   P +V  L+G  +  V+ G   +LA   DG ++ WG   +G++G+ 
Sbjct: 528 AGQLGDGT-TTDRRAPVQVTGLSG--VTSVAAGAYFSLALRTDGTVWAWGDGFEGQLGDG 584

Query: 208 GKALESSPLD-SNIDRSSESDQEISSSTIEKAQKLV------SEGMEKEKYMPIIWEPFL 260
                +SP+  + + R  +     +     +    V      +EG   +      +    
Sbjct: 585 AGVQRASPVQVTGLTRVVKLAAGAAHGLAVRDDGTVWAWGDNTEGQMGDGSWSDRFRAVQ 644

Query: 261 VEGVE-VVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFHPVSIS- 318
           V G+  V  +  G  HS+ L ++G L + G N YGQ G    D G+ P  +      +S 
Sbjct: 645 VYGLTGVSSVVGGLYHSMALAQDGTLRAWGGNAYGQFG----DGGVTPRVVAGAVPGLSG 700

Query: 319 -SGLGHS-LAICEVRSSNVTGGARGIVSWGWNRSSQ--LGRMGPDNVPLVVEGL 368
              LG S L +  VR   +      +++WG+NR  Q  LG  G  ++P+ V GL
Sbjct: 701 IKLLGASYLHVLAVREDGM------LLTWGYNRFGQLGLGAAGWSSLPVQVRGL 748



 Score =  119 bits (297), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 108/332 (32%), Positives = 166/332 (50%), Gaps = 32/332 (9%)

Query: 52  DAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPK 111
           D   P +VPGL SDV +V+AG +HSLA+  +G VWAWG N   QLGRG  +   +   P 
Sbjct: 138 DRPTPQKVPGL-SDVVAVAAGEFHSLALRADGTVWAWGSNFYGQLGRGHSQPGPS---PA 193

Query: 112 RVEGLDQVNVCAAFASGV-VSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALA 170
           +V GL  V    A A+G   S A+  DG++W WG +  GQLG G  I + + P++V  L 
Sbjct: 194 QVVGLTGV---VALAAGFDFSLAVRSDGTVWAWGANGSGQLGDGTYI-QRLAPTQVSQLQ 249

Query: 171 GEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLD-SNIDRSSE-SDQ 228
           G  +  V+ G  HALA   DG ++ WG ++ G++G+       SP+  ++I R+   + Q
Sbjct: 250 G--VSAVTAGLYHALALRSDGTVWAWGSNSSGQMGDGTWTDRPSPVQVTSIARAKAVAAQ 307

Query: 229 EISSSTIEKAQKLVSEGMEKEKYMPIIWE-----PFLVEGV-EVVDIACGFDHSLVLGRN 282
           +  S  +     + + G+  +  + I        P  V G+  V  +A G  H++VL  +
Sbjct: 308 DAGSLVLLDDGGVFAWGLNSQGQLGIGTTADSPLPVRVRGLGAVTSLAAGTQHAVVLRAD 367

Query: 283 GVLLSCGSNVYGQLGREKQDMGMFPVDIN--FHPVSISSGLGHSLAICEVRSSNVTGGAR 340
           G L + G    GQLG    +  + P  +    +  S++SG  HS+A     S        
Sbjct: 368 GTLWTWGHGATGQLGHGSSERMLSPEVVTRLSNVASVASGSFHSVAALSDGS-------- 419

Query: 341 GIVSWGWNRSSQL--GRMGPDNVPLVVEGLEG 370
            + +WG N + QL  G     ++P+ V GL G
Sbjct: 420 -VWTWGRNTNGQLGDGTTTERHLPVRVPGLSG 450



 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 113/364 (31%), Positives = 166/364 (45%), Gaps = 50/364 (13%)

Query: 29   VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAW 88
            V ++G   +G LG  T+ +     +  P RV GL S   +VS G  +SLAV  +G VW+W
Sbjct: 920  VWAWGANGRGQLGDGTTTS-----SASPVRVAGL-SAAMNVSVGQAYSLAVLPDGTVWSW 973

Query: 89   GRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKR 148
            G N+  QLG G   +R T   PK V+ L  V    A A  VV  A+  DG++W WG +  
Sbjct: 974  GANDSGQLGDGTNVARTT---PKPVQDLADVKAVTAGAHHVV--AVRHDGTVWGWGANAF 1028

Query: 149  GQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGN-- 206
            GQ+G G        P RVE L     V+ S G  H+LA   D +   WG    G++G+  
Sbjct: 1029 GQVGDGTHFWR-FRPVRVEGLL--NAVETSAGEQHSLALLGDERALSWGSHEYGQLGDAE 1085

Query: 207  -------LGKALESS----PLDSNIDRSSESDQEISSSTIE----KAQKLVSEGMEKEKY 251
                   +G  L SS    P  S       +   ++  T++     A   + +G  + + 
Sbjct: 1086 SGPSLEPVGVKLPSSKVLVPAVSVSAWHQHAAALLADGTVQTWGGNADGQLGDGTTESRA 1145

Query: 252  MPIIWEPFLVEGV-EVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVD- 309
             PI      V G+  +V +A    H+L L  +G + + G N +GQLG         PV  
Sbjct: 1146 TPIT-----VAGLGAMVAVAPAARHTLALRSDGTVWAWGDNTFGQLGDGSNTRRTLPVQV 1200

Query: 310  INFHPVS-ISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQL--GRMGPDNVPLVVE 366
            +    V+ I++G  HSLA+ E  +         + +WG+N   QL  G M    VP  + 
Sbjct: 1201 VGLEKVTAIAAGSYHSLAVREDGT---------VWAWGYNVFGQLGDGTMDARAVPTRML 1251

Query: 367  GLEG 370
            GL+G
Sbjct: 1252 GLDG 1255



 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 101/344 (29%), Positives = 152/344 (44%), Gaps = 51/344 (14%)

Query: 51   GDAYEPTRVPGLPSD-----VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRA 105
            G + EP  V  LPS        SVSA H H+ A+  +G V  WG N + QLG G  ESRA
Sbjct: 1087 GPSLEPVGVK-LPSSKVLVPAVSVSAWHQHAAALLADGTVQTWGGNADGQLGDGTTESRA 1145

Query: 106  TWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSR 165
            T   P  V GL  +   A  A   +  A+  DG++W WG +  GQLG G + T   +P +
Sbjct: 1146 T---PITVAGLGAMVAVAPAARHTL--ALRSDGTVWAWGDNTFGQLGDGSN-TRRTLPVQ 1199

Query: 166  VEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSP-----LDSNI 220
            V  L  EK+  ++ G  H+LA  EDG ++ WGY+  G++G+      + P     LD  +
Sbjct: 1200 VVGL--EKVTAIAAGSYHSLAVREDGTVWAWGYNVFGQLGDGTMDARAVPTRMLGLDGAV 1257

Query: 221  DRSSESDQEISS-------STIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGF 273
              +      +         +T   +   + EG    +  P      +VE  +V  +  G 
Sbjct: 1258 AVAGGEYHSLMLRFDGTLWATGNNSHGQLGEGTFTNRLSPFQ----VVELDQVRTVRAGG 1313

Query: 274  DHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDIN--FHPVSISSGLGHSLAICEVR 331
             HS+ L  +G + + G N  GQLG         P  +       S+ +G  H+ A+    
Sbjct: 1314 YHSVALREDGTVWTWGHNGQGQLGDGTVTTRRVPAPVPGLTAIASVGAGTSHTFAV---- 1369

Query: 332  SSNVTGGARGIVSWGWNRSSQLGRMGPDNV-----PLVVEGLEG 370
                     G  +W W R+S  G++G  +      P +V+GL G
Sbjct: 1370 ---------GSETWAWGRNSH-GQLGTGDSSDRLEPTLVKGLHG 1403



 Score = 97.8 bits (242), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 95/335 (28%), Positives = 155/335 (46%), Gaps = 46/335 (13%)

Query: 56  PTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWND---PKR 112
           PT+V  L   V++V+AG YH+LA+ ++G VWAWG N+  Q+G G      TW D   P +
Sbjct: 242 PTQVSQL-QGVSAVTAGLYHALALRSDGTVWAWGSNSSGQMGDG------TWTDRPSPVQ 294

Query: 113 VEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGE 172
           V  + +    AA  +G  S  + DDG ++ WG + +GQLG+G    ++ +P RV  L   
Sbjct: 295 VTSIARAKAVAAQDAG--SLVLLDDGGVFAWGLNSQGQLGIGT-TADSPLPVRVRGLG-- 349

Query: 173 KIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSP--------LDSNIDRSS 224
            +  ++ G  HA+    DG L+ WG+ A G++G+       SP        + S    S 
Sbjct: 350 AVTSLAAGTQHAVVLRADGTLWTWGHGATGQLGHGSSERMLSPEVVTRLSNVASVASGSF 409

Query: 225 ESDQEISSSTI----EKAQKLVSEGMEKEKYMPIIWEPFLVEGVE-VVDIACGFDHSLVL 279
            S   +S  ++          + +G   E+++P+      V G+  VV ++    HS  L
Sbjct: 410 HSVAALSDGSVWTWGRNTNGQLGDGTTTERHLPV-----RVPGLSGVVSVSASGHHSFAL 464

Query: 280 GRNGVLLSCGSNVYGQLGREKQDMGMFPVDIN--FHPVSISSGLGHSLAICEVRSSNVTG 337
             +G +   G N  GQ+G         P  +       +++SG  H +A+   R+     
Sbjct: 465 RSDGTVWGWGRNAQGQMGDGTTKDRASPARVEGLSSVKALASGGSHMVAL---RTDGT-- 519

Query: 338 GARGIVSWGWNRSSQL--GRMGPDNVPLVVEGLEG 370
               + +WG+N + QL  G       P+ V GL G
Sbjct: 520 ----VWTWGYNGAGQLGDGTTTDRRAPVQVTGLSG 550



 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 84/249 (33%), Positives = 123/249 (49%), Gaps = 17/249 (6%)

Query: 56   PTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEG 115
            P +V GL   VT+++AG YHSLAV  +G VWAWG N   QLG G +++RA    P R+ G
Sbjct: 1197 PVQVVGL-EKVTAIAAGSYHSLAVREDGTVWAWGYNVFGQLGDGTMDARAV---PTRMLG 1252

Query: 116  LDQVNVCAAFASGVVSS-AIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKI 174
            LD      A A G   S  +  DG+LW  G +  GQLG G   T  + P +V  L  +++
Sbjct: 1253 LDG---AVAVAGGEYHSLMLRFDGTLWATGNNSHGQLGEGT-FTNRLSPFQVVEL--DQV 1306

Query: 175  VKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSST 234
              V  G  H++A  EDG ++ WG++  G++G+        P       +  S    +S T
Sbjct: 1307 RTVRAGGYHSVALREDGTVWTWGHNGQGQLGDGTVTTRRVPAPVPGLTAIASVGAGTSHT 1366

Query: 235  IEKAQKLVSEGMEKEKYMPI-----IWEPFLVEGVE-VVDIACGFDHSLVLGRNGVLLSC 288
                 +  + G      +         EP LV+G+  V  +  G D S+  G +G  +S 
Sbjct: 1367 FAVGSETWAWGRNSHGQLGTGDSSDRLEPTLVKGLHGVKSVLAGGDFSVAQGADGSAMSW 1426

Query: 289  GSNVYGQLG 297
            G+NV+G LG
Sbjct: 1427 GTNVHGTLG 1435



 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 92/316 (29%), Positives = 147/316 (46%), Gaps = 39/316 (12%)

Query: 68   SVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFAS 127
            + SAG  HSL +  +G VW+WG N++ QLG G + SRA    P +VEGL    V A  A 
Sbjct: 803  AASAGRQHSLVLACDGTVWSWGGNSQGQLGDGGVTSRAY---PAKVEGL--WGVVAVLAG 857

Query: 128  GVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQ 187
            G  S  +  DG++W WG +  GQLG G  + +   P  V+ LAG  I     G  HAL  
Sbjct: 858  GDSSMVLRADGTVWTWGANGSGQLGDGT-LGDRASPLEVKGLAG--IATGVMGEAHALVV 914

Query: 188  TEDGKLFGWGYSADGRIGNLGKALESSP---------LDSNIDRSSE----SDQEISSST 234
            ++DG ++ WG +  G++G+      +SP         ++ ++ ++       D  + S  
Sbjct: 915  SQDGTVWAWGANGRGQLGDGTTTSSASPVRVAGLSAAMNVSVGQAYSLAVLPDGTVWSWG 974

Query: 235  IEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYG 294
               + +L  +G    +  P   +P + +  +V  +  G  H + +  +G +   G+N +G
Sbjct: 975  ANDSGQL-GDGTNVARTTP---KP-VQDLADVKAVTAGAHHVVAVRHDGTVWGWGANAFG 1029

Query: 295  QLGREKQDMGMFPVDIN--FHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQ 352
            Q+G         PV +    + V  S+G  HSLA+          G    +SWG +   Q
Sbjct: 1030 QVGDGTHFWRFRPVRVEGLLNAVETSAGEQHSLALL---------GDERALSWGSHEYGQ 1080

Query: 353  LG--RMGPDNVPLVVE 366
            LG    GP   P+ V+
Sbjct: 1081 LGDAESGPSLEPVGVK 1096



 Score = 94.4 bits (233), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 112/379 (29%), Positives = 154/379 (40%), Gaps = 76/379 (20%)

Query: 52  DAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPK 111
           D   P +V GL S VTSV+AG Y SLA+  +G VWAWG   E QLG GA   RA+   P 
Sbjct: 538 DRRAPVQVTGL-SGVTSVAAGAYFSLALRTDGTVWAWGDGFEGQLGDGAGVQRAS---PV 593

Query: 112 RVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLG------------------- 152
           +V GL +V      A      A+ DDG++W WG +  GQ+G                   
Sbjct: 594 QVTGLTRV--VKLAAGAAHGLAVRDDGTVWAWGDNTEGQMGDGSWSDRFRAVQVYGLTGV 651

Query: 153 ------------LGKD------------------ITEAIVPSRVEALAGEKIVKVSFGWG 182
                       L +D                  +T  +V   V  L+G K++  S+   
Sbjct: 652 SSVVGGLYHSMALAQDGTLRAWGGNAYGQFGDGGVTPRVVAGAVPGLSGIKLLGASYL-- 709

Query: 183 HALAQTEDGKLFGWGYSADGRIGNLGKALESSPLD-SNIDRSSESDQEISSSTIEKAQKL 241
           H LA  EDG L  WGY+  G++G       S P+    + +        + S + +A   
Sbjct: 710 HVLAVREDGMLLTWGYNRFGQLGLGAAGWSSLPVQVRGLGQGRRLSAGRAHSLLVRADGT 769

Query: 242 V------SEGMEKEKYMPIIWEPFLVEGVEVVDIA-CGFDHSLVLGRNGVLLSCGSNVYG 294
           V      + G   +        P L   +     A  G  HSLVL  +G + S G N  G
Sbjct: 770 VLAWGQNTSGQLGDGSTTHRASPVLARNLPCARAASAGRQHSLVLACDGTVWSWGGNSQG 829

Query: 295 QLGREKQDMGMFPVDINFHPVSISSGLGHSLAICEVRSSNVTGGARGIV-SWGWNRSSQL 353
           QLG        +P  +         GL   +A+     S++   A G V +WG N S QL
Sbjct: 830 QLGDGGVTSRAYPAKVE--------GLWGVVAVLAGGDSSMVLRADGTVWTWGANGSGQL 881

Query: 354 --GRMGPDNVPLVVEGLEG 370
             G +G    PL V+GL G
Sbjct: 882 GDGTLGDRASPLEVKGLAG 900



 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 96/298 (32%), Positives = 142/298 (47%), Gaps = 36/298 (12%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAW 88
           V ++G  SQG LG+ T+      D+  P RV GL + VTS++AG  H++ +  +G +W W
Sbjct: 320 VFAWGLNSQGQLGIGTT-----ADSPLPVRVRGLGA-VTSLAAGTQHAVVLRADGTLWTW 373

Query: 89  GRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSS-AIGDDGSLWVWGKSK 147
           G     QLG G+ E   +   P+ V  L  V   A+ ASG   S A   DGS+W WG++ 
Sbjct: 374 GHGATGQLGHGSSERMLS---PEVVTRLSNV---ASVASGSFHSVAALSDGSVWTWGRNT 427

Query: 148 RGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNL 207
            GQLG G   TE  +P RV  L+G  +V VS    H+ A   DG ++GWG +A G++G+ 
Sbjct: 428 NGQLGDGT-TTERHLPVRVPGLSG--VVSVSASGHHSFALRSDGTVWGWGRNAQGQMGDG 484

Query: 208 GKALESSP-----LDSNIDRSS--------ESDQEISSSTIEKAQKLVSEGMEKEKYMPI 254
                +SP     L S    +S         +D  + +     A +L  +G   ++  P+
Sbjct: 485 TTKDRASPARVEGLSSVKALASGGSHMVALRTDGTVWTWGYNGAGQL-GDGTTTDRRAPV 543

Query: 255 IWEPFLVEGVE-VVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDIN 311
                 V G+  V  +A G   SL L  +G + + G    GQLG         PV + 
Sbjct: 544 -----QVTGLSGVTSVAAGAYFSLALRTDGTVWAWGDGFEGQLGDGAGVQRASPVQVT 596



 Score = 84.7 bits (208), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 92/308 (29%), Positives = 136/308 (44%), Gaps = 67/308 (21%)

Query: 55  EPTRVPG-----LPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWND 109
           EP+  P      L S  + V+AG  HSL VT  G VWAWG N   QLG G++  +     
Sbjct: 34  EPSHPPAARSQALASATSKVAAGAQHSLYVTQAGTVWAWGGNGSGQLGTGSVSFQRV--V 91

Query: 110 PKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEAL 169
            ++V GL  V   A  A    S A+  D ++W WG +  GQ+G G ++ +   P +V  L
Sbjct: 92  AQQVPGLTDVTSIA--AGDAHSLALRADRTVWTWGGNNAGQVGDGTNV-DRPTPQKVPGL 148

Query: 170 AGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQE 229
           +   +V V+ G  H+LA   DG ++ WG +  G++G       S P  S           
Sbjct: 149 S--DVVAVAAGEFHSLALRADGTVWAWGSNFYGQLGR----GHSQPGPS----------- 191

Query: 230 ISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVE-VVDIACGFDHSLVLGRNGVLLSC 288
                                       P  V G+  VV +A GFD SL +  +G + + 
Sbjct: 192 ----------------------------PAQVVGLTGVVALAAGFDFSLAVRSDGTVWAW 223

Query: 289 GSNVYGQLGREKQDMGMFPVDIN-FHPVS-ISSGLGHSLAICEVRSSNVTGGARGIVSWG 346
           G+N  GQLG       + P  ++    VS +++GL H+LA+   RS         + +WG
Sbjct: 224 GANGSGQLGDGTYIQRLAPTQVSQLQGVSAVTAGLYHALAL---RSDGT------VWAWG 274

Query: 347 WNRSSQLG 354
            N S Q+G
Sbjct: 275 SNSSGQMG 282



 Score = 80.9 bits (198), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 83/277 (29%), Positives = 131/277 (47%), Gaps = 22/277 (7%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAW 88
           V ++GD ++G +G      G   D +   +V GL + V+SV  G YHS+A+  +G + AW
Sbjct: 620 VWAWGDNTEGQMG-----DGSWSDRFRAVQVYGL-TGVSSVVGGLYHSMALAQDGTLRAW 673

Query: 89  GRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKR 148
           G N   Q G G +  R        V GL  + +  A    V+  A+ +DG L  WG ++ 
Sbjct: 674 GGNAYGQFGDGGVTPRVV---AGAVPGLSGIKLLGASYLHVL--AVREDGMLLTWGYNRF 728

Query: 149 GQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLG 208
           GQLGLG     ++ P +V  L   +  ++S G  H+L    DG +  WG +  G++G+  
Sbjct: 729 GQLGLGAAGWSSL-PVQVRGLGQGR--RLSAGRAHSLLVRADGTVLAWGQNTSGQLGDGS 785

Query: 209 KALESSP-LDSNIDRSSESDQEISSSTIEKAQKLV------SEGMEKEKYMPIIWEPFLV 261
               +SP L  N+  +  +      S +      V      S+G   +  +     P  V
Sbjct: 786 TTHRASPVLARNLPCARAASAGRQHSLVLACDGTVWSWGGNSQGQLGDGGVTSRAYPAKV 845

Query: 262 EGV-EVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLG 297
           EG+  VV +  G D S+VL  +G + + G+N  GQLG
Sbjct: 846 EGLWGVVAVLAGGDSSMVLRADGTVWTWGANGSGQLG 882



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 50/126 (39%), Positives = 62/126 (49%), Gaps = 13/126 (10%)

Query: 29   VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAW 88
            V ++G   QG LG  T  T        P  VPGL + + SV AG  H+ AV +    WAW
Sbjct: 1325 VWTWGHNGQGQLGDGTVTT-----RRVPAPVPGLTA-IASVGAGTSHTFAVGSE--TWAW 1376

Query: 89   GRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKR 148
            GRN+  QLG G    R    +P  V+GL  V   +  A G  S A G DGS   WG +  
Sbjct: 1377 GRNSHGQLGTGDSSDRL---EPTLVKGLHGVK--SVLAGGDFSVAQGADGSAMSWGTNVH 1431

Query: 149  GQLGLG 154
            G LG+G
Sbjct: 1432 GTLGIG 1437


>gi|222528951|ref|YP_002572833.1| chromosome condensation regulator RCC1 [Caldicellulosiruptor bescii
           DSM 6725]
 gi|222455798|gb|ACM60060.1| regulator of chromosome condensation RCC1 [Caldicellulosiruptor
           bescii DSM 6725]
          Length = 743

 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 108/337 (32%), Positives = 163/337 (48%), Gaps = 35/337 (10%)

Query: 48  GVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATW 107
           G   D+  P RV GL  DV +VSAG +HSLA+  +G+VW WG  N  Q          T 
Sbjct: 77  GTYKDSCIPVRVKGLK-DVVAVSAGTFHSLALKKDGSVWIWGHTNYGQRKSDVYRDFTT- 134

Query: 108 NDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVE 167
             P +V+ L   N+ A  A    S A+G DGS+W WG +  G+LG+G  +  + VP +V+
Sbjct: 135 --PVKVKELK--NIVAIAAGWDFSLAVGSDGSVWAWGINNHGELGIG-SLKPSAVPVKVK 189

Query: 168 ALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESD 227
            L  + +V VS G  H+LA   DG ++ WGY+ DG +GN  +  E   +   +     SD
Sbjct: 190 GL--KDVVAVSAGLYHSLALKRDGTVWSWGYNEDGELGN--RPTEDYTVSVPVRVKGLSD 245

Query: 228 QEISSSTIEKAQKLVSEG---------MEKEKYMPIIWEPFLVEGV-EVVDIACGFDHSL 277
               S+    +  L  +G         +EK   +   + P  +  + +VV IA G+ HS+
Sbjct: 246 VIAISAGGFHSIALNKDGAVWIWGGGIIEKNGKIDNSYIPVRIRWLNKVVAIAAGYRHSI 305

Query: 278 VLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDIN--FHPVSISSGLGHSLAICEVRSSNV 335
            L  +G +   G N YG LG    +     V +    + V++++G  HS+A+ +    N 
Sbjct: 306 ALKDDGTVWVWGHNSYGVLGSNVGEHSFLLVQVKGLKNVVAVAAGRLHSVALTK----NG 361

Query: 336 TGGARGIVSWGWNRSSQLGRMGPD---NVPLVVEGLE 369
           T     I +WG N   QLGR       N+P  V+ L+
Sbjct: 362 T-----IWAWGNNAFGQLGRENNSFSLNLPYKVKWLD 393



 Score =  114 bits (284), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 98/320 (30%), Positives = 153/320 (47%), Gaps = 67/320 (20%)

Query: 56  PTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEG 115
           P +V GL  DV +VSAG YHSLA+  +G VW+WG N + +LG    E     + P RV+G
Sbjct: 185 PVKVKGLK-DVVAVSAGLYHSLALKRDGTVWSWGYNEDGELGNRPTEDYTV-SVPVRVKG 242

Query: 116 LDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIV 175
           L   +V A  A G  S A+  DG++W+WG    G +     I  + +P R+  L   K+V
Sbjct: 243 LS--DVIAISAGGFHSIALNKDGAVWIWGG---GIIEKNGKIDNSYIPVRIRWL--NKVV 295

Query: 176 KVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTI 235
            ++ G+ H++A  +DG ++ WG+++ G +G                          S+  
Sbjct: 296 AIAAGYRHSIALKDDGTVWVWGHNSYGVLG--------------------------SNVG 329

Query: 236 EKAQKLVSEGMEKEKYMPIIWEPFLVEGVE-VVDIACGFDHSLVLGRNGVLLSCGSNVYG 294
           E +  LV                  V+G++ VV +A G  HS+ L +NG + + G+N +G
Sbjct: 330 EHSFLLVQ-----------------VKGLKNVVAVAAGRLHSVALTKNGTIWAWGNNAFG 372

Query: 295 QLGREKQDMGM-FPVDINF--HPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSS 351
           QLGRE     +  P  + +  + V+I++G  H+LAI    +         + SWG N   
Sbjct: 373 QLGRENNSFSLNLPYKVKWLDNVVAIATGGSHTLAIKRDGT---------VWSWGANNKG 423

Query: 352 QLGR--MGPDNVPLVVEGLE 369
           QLG        +P  V+GL 
Sbjct: 424 QLGNGTYKSSYIPTCVKGLN 443



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 115/401 (28%), Positives = 179/401 (44%), Gaps = 85/401 (21%)

Query: 32  FGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRN 91
           +G  S G LG     + VG  ++   +V GL  +V +V+AG  HS+A+T NG +WAWG N
Sbjct: 316 WGHNSYGVLG-----SNVGEHSFLLVQVKGLK-NVVAVAAGRLHSVALTKNGTIWAWGNN 369

Query: 92  NEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQL 151
              QLGR    +  + N P +V+ LD  NV A    G  + AI  DG++W WG + +GQL
Sbjct: 370 AFGQLGRE--NNSFSLNLPYKVKWLD--NVVAIATGGSHTLAIKRDGTVWSWGANNKGQL 425

Query: 152 GLG-----------KDITEAI-------------------VPSRVEALAGEK-------- 173
           G G           K +  A+                   V   +E++  EK        
Sbjct: 426 GNGTYKSSYIPTCVKGLNNAVLVEAGSQHSLAVDKDGTVWVWGFIESVWSEKNTKDILSP 485

Query: 174 ----------IVKVSFGWGHALAQTEDGKLFGWGYS------ADGRIGNLGKALESSPLD 217
                     I +++ G  + L   +DG ++G G         D  + ++ K +    LD
Sbjct: 486 LPIKIGKLNDITEIAGGLDYILVLRKDGNIWGCGNDFYFRKFTDSSVSSVTKLIR---LD 542

Query: 218 SNIDRSSESDQEISSSTIEKAQKLVSEGM----EKEKYMPIIWEPFLVEGVE-VVDIACG 272
           +  +  S +     S  +     + S G      K+KY+    +P  ++G+  VV +A G
Sbjct: 543 NIKNVRSIAAGYFHSLAVRTDGTVWSWGDTNLDNKKKYLNFSEKPVKIKGLSGVVKVAAG 602

Query: 273 FDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDIN--FHPVSISSGLGHSLAICEV 330
             HSL L ++G + S G N YGQLG   ++    PV +    + V+I++G  HS+A+ + 
Sbjct: 603 KYHSLALKKDGTVWSWGYNAYGQLGNGTRETSFVPVRVKGLNNVVAIAAGDYHSMALKKD 662

Query: 331 RSSNVTGGARGIVSWGWNRSSQLGRMGPD--NVPLVVEGLE 369
            +  V         WG N   QLGR   +   VPL VE L+
Sbjct: 663 GTVWV---------WGSNIRGQLGRRNIEFSTVPLKVEKLD 694



 Score = 97.8 bits (242), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 61/147 (41%), Positives = 88/147 (59%), Gaps = 9/147 (6%)

Query: 55  EPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVE 114
           +P ++ GL S V  V+AG YHSLA+  +G VW+WG N   QLG G  E+      P RV+
Sbjct: 586 KPVKIKGL-SGVVKVAAGKYHSLALKKDGTVWSWGYNAYGQLGNGTRETSFV---PVRVK 641

Query: 115 GLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKI 174
           GL+  NV A  A    S A+  DG++WVWG + RGQLG  ++I  + VP +VE L  + +
Sbjct: 642 GLN--NVVAIAAGDYHSMALKKDGTVWVWGSNIRGQLGR-RNIEFSTVPLKVEKL--DNV 696

Query: 175 VKVSFGWGHALAQTEDGKLFGWGYSAD 201
           V ++ G  H++A  +DG ++ WG   D
Sbjct: 697 VAIAAGDTHSVALKKDGTVWVWGIECD 723



 Score = 90.9 bits (224), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 91/340 (26%), Positives = 160/340 (47%), Gaps = 46/340 (13%)

Query: 52  DAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPK 111
           ++Y P R+  L + V +++AG+ HS+A+ ++G VW WG N+   LG    E         
Sbjct: 281 NSYIPVRIRWL-NKVVAIAAGYRHSIALKDDGTVWVWGHNSYGVLGSNVGEHSFL---LV 336

Query: 112 RVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAG 171
           +V+GL   NV A  A  + S A+  +G++W WG +  GQLG   +     +P +V+ L  
Sbjct: 337 QVKGLK--NVVAVAAGRLHSVALTKNGTIWAWGNNAFGQLGRENNSFSLNLPYKVKWL-- 392

Query: 172 EKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGN----------LGKALESSPL-DSNI 220
           + +V ++ G  H LA   DG ++ WG +  G++GN            K L ++ L ++  
Sbjct: 393 DNVVAIATGGSHTLAIKRDGTVWSWGANNKGQLGNGTYKSSYIPTCVKGLNNAVLVEAGS 452

Query: 221 DRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGV-EVVDIACGFDHSLVL 279
             S   D++ +       + + SE   K+   P+   P  +  + ++ +IA G D+ LVL
Sbjct: 453 QHSLAVDKDGTVWVWGFIESVWSEKNTKDILSPL---PIKIGKLNDITEIAGGLDYILVL 509

Query: 280 GRNGVLLSCGSNVYGQLGREKQD------MGMFPVDINFHPVSISSGLGHSLAICEVRSS 333
            ++G +  CG++ Y    R+  D        +  +D   +  SI++G  HSLA   VR+ 
Sbjct: 510 RKDGNIWGCGNDFY---FRKFTDSSVSSVTKLIRLDNIKNVRSIAAGYFHSLA---VRTD 563

Query: 334 NVTGGARGIVSWGW---NRSSQLGRMGPDNVPLVVEGLEG 370
                      W W   N  ++   +     P+ ++GL G
Sbjct: 564 GTV--------WSWGDTNLDNKKKYLNFSEKPVKIKGLSG 595



 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 72/266 (27%), Positives = 122/266 (45%), Gaps = 61/266 (22%)

Query: 109 DPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEA 168
           + K ++G +   V ++ A  + + AI DDG++W WG +  GQLG G    ++ +P RV+ 
Sbjct: 33  NSKELQG-ENFKVISSGAGSLHTLAIKDDGTVWAWGYNGFGQLGNGT-YKDSCIPVRVKG 90

Query: 169 LAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQ 228
           L  + +V VS G  H+LA  +DG ++ WG++  G+                  R S+  +
Sbjct: 91  L--KDVVAVSAGTFHSLALKKDGSVWIWGHTNYGQ------------------RKSDVYR 130

Query: 229 EISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSC 288
           + ++    K  K                         +V IA G+D SL +G +G + + 
Sbjct: 131 DFTTPVKVKELK------------------------NIVAIAAGWDFSLAVGSDGSVWAW 166

Query: 289 GSNVYGQLGREKQDMGMFPVDIN--FHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWG 346
           G N +G+LG         PV +      V++S+GL HSLA+    +         + SWG
Sbjct: 167 GINNHGELGIGSLKPSAVPVKVKGLKDVVAVSAGLYHSLALKRDGT---------VWSWG 217

Query: 347 WNRSSQLGRMGPDN----VPLVVEGL 368
           +N   +LG    ++    VP+ V+GL
Sbjct: 218 YNEDGELGNRPTEDYTVSVPVRVKGL 243


>gi|291539013|emb|CBL12124.1| Fibronectin type III domain./Regulator of chromosome condensation
            (RCC1) repeat [Roseburia intestinalis XB6B4]
          Length = 1546

 Score =  119 bits (299), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 107/369 (28%), Positives = 171/369 (46%), Gaps = 58/369 (15%)

Query: 10   NHVNVLTSRIFMRSASGTAVVSFGDGSQGALGLPTSL------------TGVGGDAYEPT 57
            N +N +   + + S S   V+S GD   G +    SL             G   + Y+PT
Sbjct: 726  NQINTIRPDVGINSYS--QVLSLGDYHSGVIAQDGSLYMWGVNDFGQIGDGTTKNRYKPT 783

Query: 58   RVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLD 117
            ++      V SVS G Y+S A+T +G+++ WG N   Q+G G  E R     P ++  LD
Sbjct: 784  KIL---DHVVSVSLGDYYSGAITQDGSLYMWGSNVYGQIGDGTTEDRYK---PTKI--LD 835

Query: 118  QVNVCAAFASGVV-SSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVK 176
             V    A + G   S AI  DGSL++WG +  GQ+G G    +   P+++     + ++ 
Sbjct: 836  HV---IAVSLGYCHSGAITQDGSLYMWGSNDSGQIGDGT-TEDRYKPTKIL----DHVIA 887

Query: 177  VSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIE 236
            VS G  H+ A T+DG L+ WG ++ G IG+    +   P        + S Q  +S  I 
Sbjct: 888  VSLGVSHSGAITQDGSLYMWGSNSRGGIGDGTTEVRYKPTKILDHVIAVSLQTGNSGAIT 947

Query: 237  KAQKL----------VSEGMEKEKYMPI-IWEPFLVEGVEVVDIACGFDHSLVLGRNGVL 285
            +   L          + +G E+++Y P  I +        V+ ++ G DHS  + ++G L
Sbjct: 948  QDGSLYMWGSNVYGEIGDGTEEDRYKPTKILD-------HVIAVSLGDDHSGAITQDGSL 1000

Query: 286  LSCGSNVYGQLGREKQDMGMFPVDINFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSW 345
               G N YG++G   ++    P  I  H +++S G+GHS AI +  S         +  W
Sbjct: 1001 YMWGRNYYGEIGDGTEEDRYKPTKILDHVIAVSLGVGHSGAITQDGS---------LYMW 1051

Query: 346  GWNRSSQLG 354
            GWN   Q+G
Sbjct: 1052 GWNSDGQIG 1060



 Score = 77.8 bits (190), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 56/175 (32%), Positives = 96/175 (54%), Gaps = 20/175 (11%)

Query: 32   FGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRN 91
            +G  S+G +G      G     Y+PT++      V +VS    +S A+T +G+++ WG N
Sbjct: 907  WGSNSRGGIG-----DGTTEVRYKPTKIL---DHVIAVSLQTGNSGAITQDGSLYMWGSN 958

Query: 92   NEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQL 151
               ++G G  E R     P ++  LD  +V A       S AI  DGSL++WG++  G++
Sbjct: 959  VYGEIGDGTEEDRYK---PTKI--LD--HVIAVSLGDDHSGAITQDGSLYMWGRNYYGEI 1011

Query: 152  GLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGN 206
            G G +  +   P+++     + ++ VS G GH+ A T+DG L+ WG+++DG+IG+
Sbjct: 1012 GDGTE-EDRYKPTKIL----DHVIAVSLGVGHSGAITQDGSLYMWGWNSDGQIGD 1061



 Score = 58.9 bits (141), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 49/138 (35%), Positives = 69/138 (50%), Gaps = 24/138 (17%)

Query: 30   VSFGDGSQGALGLPTSL------------TGVGGDAYEPTRVPGLPSDVTSVSAGHYHSL 77
            VS   G+ GA+    SL             G   D Y+PT++      V +VS G  HS 
Sbjct: 936  VSLQTGNSGAITQDGSLYMWGSNVYGEIGDGTEEDRYKPTKIL---DHVIAVSLGDDHSG 992

Query: 78   AVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGV-VSSAIGD 136
            A+T +G+++ WGRN   ++G G  E R     P ++  LD V    A + GV  S AI  
Sbjct: 993  AITQDGSLYMWGRNYYGEIGDGTEEDRYK---PTKI--LDHV---IAVSLGVGHSGAITQ 1044

Query: 137  DGSLWVWGKSKRGQLGLG 154
            DGSL++WG +  GQ+G G
Sbjct: 1045 DGSLYMWGWNSDGQIGDG 1062



 Score = 44.7 bits (104), Expect = 0.068,   Method: Composition-based stats.
 Identities = 30/89 (33%), Positives = 45/89 (50%), Gaps = 15/89 (16%)

Query: 30   VSFGDGSQGALGLPTSL------------TGVGGDAYEPTRVPGLPSDVTSVSAGHYHSL 77
            VS GD   GA+    SL             G   D Y+PT++      V +VS G  HS 
Sbjct: 984  VSLGDDHSGAITQDGSLYMWGRNYYGEIGDGTEEDRYKPTKIL---DHVIAVSLGVGHSG 1040

Query: 78   AVTNNGAVWAWGRNNEVQLGRGALESRAT 106
            A+T +G+++ WG N++ Q+G G  ++R T
Sbjct: 1041 AITQDGSLYMWGWNSDGQIGDGTTKARYT 1069


>gi|145594515|ref|YP_001158812.1| regulator of chromosome condensation, RCC1 [Salinispora tropica
           CNB-440]
 gi|145303852|gb|ABP54434.1| regulator of chromosome condensation, RCC1 [Salinispora tropica
           CNB-440]
          Length = 554

 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 93/304 (30%), Positives = 142/304 (46%), Gaps = 37/304 (12%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLP--SDVTSVSAGHYHSLAVTNNGAVW 86
           V+++G  S+G LG      G   D   P  V GLP  + +T+++AG  HSLA+T+ GAV 
Sbjct: 111 VLAWGSNSRGQLG-----DGTTTDRSTPVTV-GLPAGTTITALAAGRRHSLALTDTGAVL 164

Query: 87  AWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKS 146
           AWG N+  QLG G   +R+T   P  V GL       A A+   S A+ D G+   WG +
Sbjct: 165 AWGSNSNGQLGDGTTTARST---PVTV-GLPAGTTITALAASTYSLALTDTGAALAWGSN 220

Query: 147 KRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGN 206
            RGQLG G   T+   P  V   AG  I  ++  + H+LA T+ G +  WG +++G++G+
Sbjct: 221 SRGQLGDGT-TTDRSTPVTVSLPAGTTITALAASYDHSLALTDTGAVLAWGSNSNGQLGD 279

Query: 207 LGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLV------------------SEGMEK 248
                 S+P+   +     +   I++    ++  LV                   +G   
Sbjct: 280 GTTTNRSTPVTVGL----PAGTTITALAAGRSHTLVLTSAGAVLAWGSNSNGQLGDGTTT 335

Query: 249 EKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPV 308
           ++  P+     L  G  +  +A G+ HSL L   G +L+ G N YGQLG         PV
Sbjct: 336 DRSTPVTVG--LPAGTTITALAAGYYHSLALTDTGAVLAWGGNSYGQLGDGTTTDRSTPV 393

Query: 309 DINF 312
            +  
Sbjct: 394 TVGL 397



 Score =  100 bits (250), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 99/347 (28%), Positives = 156/347 (44%), Gaps = 44/347 (12%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLP--SDVTSVSAGHYHSLAVTNNGAVW 86
           V+++GD   G LG      G       P  V GLP  + +T+++AG  HSLA+T+ G V 
Sbjct: 59  VLAWGDNFSGQLG-----DGTTTARSTPVTV-GLPAGTTITALAAGGSHSLALTDTGVVL 112

Query: 87  AWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSS-AIGDDGSLWVWGK 145
           AWG N+  QLG G    R+T   P  V GL       A A+G   S A+ D G++  WG 
Sbjct: 113 AWGSNSRGQLGDGTTTDRST---PVTV-GLPAGTTITALAAGRRHSLALTDTGAVLAWGS 168

Query: 146 SKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIG 205
           +  GQLG G   T    P  V   AG  I  ++    ++LA T+ G    WG ++ G++G
Sbjct: 169 NSNGQLGDGT-TTARSTPVTVGLPAGTTITALAAS-TYSLALTDTGAALAWGSNSRGQLG 226

Query: 206 NLGKALESSPLDSNIDR-------SSESDQEISSSTI-------EKAQKLVSEGMEKEKY 251
           +      S+P+  ++         ++  D  ++ +           +   + +G    + 
Sbjct: 227 DGTTTDRSTPVTVSLPAGTTITALAASYDHSLALTDTGAVLAWGSNSNGQLGDGTTTNRS 286

Query: 252 MPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDIN 311
            P+     L  G  +  +A G  H+LVL   G +L+ GSN  GQLG         PV + 
Sbjct: 287 TPVTVG--LPAGTTITALAAGRSHTLVLTSAGAVLAWGSNSNGQLGDGTTTDRSTPVTVG 344

Query: 312 FHP----VSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLG 354
                   ++++G  HSLA+ +  +         +++WG N   QLG
Sbjct: 345 LPAGTTITALAAGYYHSLALTDTGA---------VLAWGGNSYGQLG 382



 Score = 82.4 bits (202), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 68/196 (34%), Positives = 103/196 (52%), Gaps = 22/196 (11%)

Query: 28  AVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLP--SDVTSVSAGHYHSLAVTNNGAV 85
           A +++G  S+G LG      G   D   P  V  LP  + +T+++A + HSLA+T+ GAV
Sbjct: 213 AALAWGSNSRGQLG-----DGTTTDRSTPVTV-SLPAGTTITALAASYDHSLALTDTGAV 266

Query: 86  WAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASG-----VVSSAIGDDGSL 140
            AWG N+  QLG G   +R+T   P  V GL       A A+G     V++SA    G++
Sbjct: 267 LAWGSNSNGQLGDGTTTNRST---PVTV-GLPAGTTITALAAGRSHTLVLTSA----GAV 318

Query: 141 WVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSA 200
             WG +  GQLG G   T+   P  V   AG  I  ++ G+ H+LA T+ G +  WG ++
Sbjct: 319 LAWGSNSNGQLGDGT-TTDRSTPVTVGLPAGTTITALAAGYYHSLALTDTGAVLAWGGNS 377

Query: 201 DGRIGNLGKALESSPL 216
            G++G+      S+P+
Sbjct: 378 YGQLGDGTTTDRSTPV 393



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 56/151 (37%), Positives = 76/151 (50%), Gaps = 14/151 (9%)

Query: 28  AVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLP--SDVTSVSAGHYHSLAVTNNGAV 85
           AV+++G  S G LG      G   +   P  V GLP  + +T+++AG  H+L +T+ GAV
Sbjct: 265 AVLAWGSNSNGQLG-----DGTTTNRSTPVTV-GLPAGTTITALAAGRSHTLVLTSAGAV 318

Query: 86  WAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSS-AIGDDGSLWVWG 144
            AWG N+  QLG G    R+T   P  V GL       A A+G   S A+ D G++  WG
Sbjct: 319 LAWGSNSNGQLGDGTTTDRST---PVTV-GLPAGTTITALAAGYYHSLALTDTGAVLAWG 374

Query: 145 KSKRGQLGLGKDITEAIVPSRVEALAGEKIV 175
            +  GQLG G   T+   P  V   AG  I 
Sbjct: 375 GNSYGQLGDGT-TTDRSTPVTVGLPAGTTIT 404



 Score = 58.5 bits (140), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 57/219 (26%), Positives = 85/219 (38%), Gaps = 53/219 (24%)

Query: 139 SLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGY 198
           ++  WG +  GQLG G   T    P  V   AG  I  ++ G  H+LA T+ G +  WG 
Sbjct: 58  TVLAWGDNFSGQLGDGT-TTARSTPVTVGLPAGTTITALAAGGSHSLALTDTGVVLAWGS 116

Query: 199 SADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEP 258
           ++ G++G                                      +G   ++  P+    
Sbjct: 117 NSRGQLG--------------------------------------DGTTTDRSTPVTVG- 137

Query: 259 FLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFHPVSIS 318
            L  G  +  +A G  HSL L   G +L+ GSN  GQLG         PV +     +  
Sbjct: 138 -LPAGTTITALAAGRRHSLALTDTGAVLAWGSNSNGQLGDGTTTARSTPVTVGLPAGTTI 196

Query: 319 SGLG---HSLAICEVRSSNVTGGARGIVSWGWNRSSQLG 354
           + L    +SLA+ +      TG A   ++WG N   QLG
Sbjct: 197 TALAASTYSLALTD------TGAA---LAWGSNSRGQLG 226



 Score = 54.7 bits (130), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 38/92 (41%), Positives = 55/92 (59%), Gaps = 9/92 (9%)

Query: 17  SRIFMRSASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLP--SDVTSVSAGHY 74
           S   + +++G AV+++G  S G LG      G   D   P  V GLP  + +T+++AG+Y
Sbjct: 307 SHTLVLTSAG-AVLAWGSNSNGQLG-----DGTTTDRSTPVTV-GLPAGTTITALAAGYY 359

Query: 75  HSLAVTNNGAVWAWGRNNEVQLGRGALESRAT 106
           HSLA+T+ GAV AWG N+  QLG G    R+T
Sbjct: 360 HSLALTDTGAVLAWGGNSYGQLGDGTTTDRST 391


>gi|108761023|ref|YP_629150.1| RCC1 repeat-containing protein [Myxococcus xanthus DK 1622]
 gi|108464903|gb|ABF90088.1| RCC1 repeat domain protein [Myxococcus xanthus DK 1622]
          Length = 1466

 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 119/374 (31%), Positives = 182/374 (48%), Gaps = 45/374 (12%)

Query: 10   NHVNVLTSRIFMRSASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSV 69
            + ++V  +   M  A GT V+++G+   G LG  TS    G     P  VPG+P  V SV
Sbjct: 762  DRLSVGRAHTLMVRADGT-VMAWGENGSGQLGDGTSTHRTG-----PVSVPGVPC-VRSV 814

Query: 70   SAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGV 129
            ++G  HSLA+  +G VWAWG N   QLG G    R T   P  VEGL    V A  A G 
Sbjct: 815  ASGIQHSLALACDGTVWAWGANARGQLGDGTTTPRVT---PGLVEGLR--GVVALAAGGD 869

Query: 130  VSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTE 189
             S A+  DGS+W WG +  GQLG G  +T+  +P+ VE L+    V V+ G  HALA  E
Sbjct: 870  ASVALRADGSVWSWGGNASGQLGDGT-LTDRALPAHVEHLS--NAVAVAVGETHALAVGE 926

Query: 190  DGKLFGWGYSADGRIGNLGKALESSPLD-SNIDR--SSESDQEISSSTIEKAQKL----- 241
            DG L+ WG +  G++G+ G A   +P+    ++R  S  + +  S +  +          
Sbjct: 927  DGALWAWGANGSGQLGDGGTAPSLTPVRVKGLERVASVAAGRAFSVAVRDDGTAWAWGTN 986

Query: 242  ----VSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLG 297
                + +G    + +P   +   ++G+    ++ G  H + L  +G + + G N  GQLG
Sbjct: 987  PSGQLGDGTNHARSVPN--QVTSLKGIRA--MSAGAHHVVALSADGTVWTWGDNTLGQLG 1042

Query: 298  R-EKQDMGMFPVDI-NFHPV-SISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQL- 353
                   GM+P  +     V ++++G   ++A+       + G AR   +WG N   QL 
Sbjct: 1043 DGSSSPTGMWPRQVPELRGVEAVAAGEQFTVAVL------LDGTAR---AWGSNEYGQLG 1093

Query: 354  -GRMGPDNVPLVVE 366
             G+ GP   P+ V+
Sbjct: 1094 DGKTGPQLTPMAVK 1107



 Score =  115 bits (289), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 113/352 (32%), Positives = 160/352 (45%), Gaps = 39/352 (11%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAW 88
           V ++G  + G LG  T+L     D   P  VPGL S VT+V+AG  H LA+ ++G+VWAW
Sbjct: 480 VWAWGRNAAGQLGDGTTL-----DRARPVAVPGLTS-VTAVAAGGSHVLALRSDGSVWAW 533

Query: 89  GRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKR 148
           G N   QLG G    R T   P RV GL    V A  A    S A+  DG++W WG+   
Sbjct: 534 GYNALGQLGDGTTVDRLT---PVRVSGLGA--VVAVAAGSYFSMALQSDGTVWTWGEGFE 588

Query: 149 GQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLG 208
           GQLG G  + + + P RVE LA   I +V+ G  HALA   DG ++ WG + +G++G+  
Sbjct: 589 GQLGDGGGV-QRLSPVRVEGLA--NITRVAAGSAHALAVRGDGTVWAWGDNGEGQLGDGS 645

Query: 209 KALESSPLD-------SNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLV 261
            A    P+        + +         +      +A      G   +  +     P L+
Sbjct: 646 WADRFRPVQVPGLQGITAVSGGRSHSMALQGDGTVRAWGYNGYGQLGDGTLTSRVRPALI 705

Query: 262 EGVEVVD-IACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDIN--FHPVSIS 318
            G+  +  +     H L L  +G L   G N +GQLG         PV +        +S
Sbjct: 706 PGLTGIQALHPSHLHVLALHADGTLRGWGYNRFGQLGLGAAGWSAVPVQVRGIGRVDRLS 765

Query: 319 SGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLG------RMGPDNVPLV 364
            G  H+L    VR+         +++WG N S QLG      R GP +VP V
Sbjct: 766 VGRAHTLM---VRADGT------VMAWGENGSGQLGDGTSTHRTGPVSVPGV 808



 Score =  111 bits (277), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 121/389 (31%), Positives = 178/389 (45%), Gaps = 53/389 (13%)

Query: 5   KSVVHNHVNVLTSRIFMRSASGTAVVSFGDGSQGALGLPTSLT---GVGGDAYEPTRVPG 61
           + VV   V  L     M + S  ++ + GDGS  A G  T      G   + +   RV G
Sbjct: 398 RHVVPAPVMRLAGVTSMATGSFHSLAALGDGSVWAWGRNTYGQLGDGSTAERHAAVRVEG 457

Query: 62  LPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNV 121
           L   V SV++  +HSLAV  +G VWAWGRN   QLG G    RA    P  V GL  V  
Sbjct: 458 L-GGVRSVASAAHHSLAVGMDGTVWAWGRNAAGQLGDGTTLDRAR---PVAVPGLTSVTA 513

Query: 122 CAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGW 181
            AA  S V+  A+  DGS+W WG +  GQLG G  + + + P RV  L    +V V+ G 
Sbjct: 514 VAAGGSHVL--ALRSDGSVWAWGYNALGQLGDGTTV-DRLTPVRVSGLG--AVVAVAAGS 568

Query: 182 GHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLD----SNIDR----SSESDQEISSS 233
             ++A   DG ++ WG   +G++G+ G     SP+     +NI R    S+ +       
Sbjct: 569 YFSMALQSDGTVWTWGEGFEGQLGDGGGVQRLSPVRVEGLANITRVAAGSAHALAVRGDG 628

Query: 234 TI----EKAQKLVSEGMEKEKYMPIIWEPFLVEGVE-VVDIACGFDHSLVLGRNGVLLSC 288
           T+    +  +  + +G   +++ P+      V G++ +  ++ G  HS+ L  +G + + 
Sbjct: 629 TVWAWGDNGEGQLGDGSWADRFRPV-----QVPGLQGITAVSGGRSHSMALQGDGTVRAW 683

Query: 289 GSNVYGQLGREKQDMGMFPVDI-------NFHPVSISSGLGHSLAICEVRSSNVTGGARG 341
           G N YGQLG       + P  I         HP  +     H LA+      +  G  RG
Sbjct: 684 GYNGYGQLGDGTLTSRVRPALIPGLTGIQALHPSHL-----HVLAL------HADGTLRG 732

Query: 342 IVSWGWNRSSQ--LGRMGPDNVPLVVEGL 368
              WG+NR  Q  LG  G   VP+ V G+
Sbjct: 733 ---WGYNRFGQLGLGAAGWSAVPVQVRGI 758



 Score =  108 bits (271), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 112/358 (31%), Positives = 165/358 (46%), Gaps = 45/358 (12%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAW 88
           V ++GD  +G LG      G   D + P +VPGL   +T+VS G  HS+A+  +G V AW
Sbjct: 630 VWAWGDNGEGQLG-----DGSWADRFRPVQVPGL-QGITAVSGGRSHSMALQGDGTVRAW 683

Query: 89  GRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKR 148
           G N   QLG G L SR     P  + GL    + A   S +   A+  DG+L  WG ++ 
Sbjct: 684 GYNGYGQLGDGTLTSRVR---PALIPGL--TGIQALHPSHLHVLALHADGTLRGWGYNRF 738

Query: 149 GQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLG 208
           GQLGLG     A VP +V  +   ++ ++S G  H L    DG +  WG +  G++G+  
Sbjct: 739 GQLGLGAAGWSA-VPVQVRGIG--RVDRLSVGRAHTLMVRADGTVMAWGENGSGQLGDGT 795

Query: 209 KALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEG------------MEKEKYMPIIW 256
               + P+         S     +S I+ +  L  +G            +      P + 
Sbjct: 796 STHRTGPVSVPGVPCVRS----VASGIQHSLALACDGTVWAWGANARGQLGDGTTTPRV- 850

Query: 257 EPFLVEGVE-VVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINF--H 313
            P LVEG+  VV +A G D S+ L  +G + S G N  GQLG         P  +    +
Sbjct: 851 TPGLVEGLRGVVALAAGGDASVALRADGSVWSWGGNASGQLGDGTLTDRALPAHVEHLSN 910

Query: 314 PVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMG--PDNVPLVVEGLE 369
            V+++ G  H+LA+ E  +         + +WG N S QLG  G  P   P+ V+GLE
Sbjct: 911 AVAVAVGETHALAVGEDGA---------LWAWGANGSGQLGDGGTAPSLTPVRVKGLE 959



 Score =  104 bits (260), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 113/360 (31%), Positives = 160/360 (44%), Gaps = 73/360 (20%)

Query: 17  SRIFMRSASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHS 76
           S   M   S   V ++G+G +G LG      G G     P RV GL +++T V+AG  H+
Sbjct: 568 SYFSMALQSDGTVWTWGEGFEGQLG-----DGGGVQRLSPVRVEGL-ANITRVAAGSAHA 621

Query: 77  LAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGD 136
           LAV  +G VWAWG N E QLG G+   R     P +V GL  +   +   S   S A+  
Sbjct: 622 LAVRGDGTVWAWGDNGEGQLGDGSWADR---FRPVQVPGLQGITAVSGGRS--HSMALQG 676

Query: 137 DGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGW 196
           DG++  WG +  GQLG G  +T  + P+ +  L G + +  S    H LA   DG L GW
Sbjct: 677 DGTVRAWGYNGYGQLGDGT-LTSRVRPALIPGLTGIQALHPSH--LHVLALHADGTLRGW 733

Query: 197 GYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIW 256
           GY+  G++G LG A  S+                                          
Sbjct: 734 GYNRFGQLG-LGAAGWSA------------------------------------------ 750

Query: 257 EPFLVEGVEVVD-IACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFHPV 315
            P  V G+  VD ++ G  H+L++  +G +++ G N  GQLG         PV +   P 
Sbjct: 751 VPVQVRGIGRVDRLSVGRAHTLMVRADGTVMAWGENGSGQLGDGTSTHRTGPVSVPGVPC 810

Query: 316 --SISSGLGHSLAI-CEVRSSNVTGGARGIVSWGWNRSSQL--GRMGPDNVPLVVEGLEG 370
             S++SG+ HSLA+ C+            + +WG N   QL  G   P   P +VEGL G
Sbjct: 811 VRSVASGIQHSLALACDGT----------VWAWGANARGQLGDGTTTPRVTPGLVEGLRG 860



 Score =  104 bits (259), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 114/356 (32%), Positives = 171/356 (48%), Gaps = 37/356 (10%)

Query: 28  AVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWA 87
           +V ++G  S G LG  T+      D   P RV GL S V +V+AG +HSLA+  +G VWA
Sbjct: 129 SVWTWGGNSSGQLGDGTTT-----DRATPMRVAGLDS-VVAVAAGDFHSLALREDGTVWA 182

Query: 88  WGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGV-VSSAIGDDGSLWVWGKS 146
           WG N   QLGRG  +   T   P++V GL+ V    A A+G   + A+ +DG++  WG +
Sbjct: 183 WGTNFHGQLGRGHTQPGLT---PEQVPGLNGV---VALAAGFDFTLAVLEDGTVRAWGSN 236

Query: 147 KRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGN 206
             GQLG G   T+ + P +V  L+G  I +V  G  HALA  +DG ++ WG +A G++G+
Sbjct: 237 GSGQLGDGTS-TQRLSPVKVSELSG--ITEVRAGTYHALALGKDGGVWTWGSNASGQLGD 293

Query: 207 LGKALESSPLD-SNIDR-----SSESDQ-EISSSTIEKAQKLVSEGMEKEKYMPIIWEPF 259
                 + P+    ++R     S +SD   +  +    A      G   +        P 
Sbjct: 294 GTWNDRAVPMQVPGLERVKAVASMDSDSLALLDTGAVFAWGANGSGQLGDGDTTDRATPG 353

Query: 260 LVEGVE-VVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFHP--VS 316
            V G+  V  +  G  H+LVL ++G L + G  + GQLG    +  + P  +       S
Sbjct: 354 PVPGLNAVASVVGGAQHALVLRKDGTLWAWGGGLSGQLGHGGSERHVVPAPVMRLAGVTS 413

Query: 317 ISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQL--GRMGPDNVPLVVEGLEG 370
           +++G  HSLA           G   + +WG N   QL  G     +  + VEGL G
Sbjct: 414 MATGSFHSLAAL---------GDGSVWAWGRNTYGQLGDGSTAERHAAVRVEGLGG 460



 Score =  104 bits (259), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 98/323 (30%), Positives = 151/323 (46%), Gaps = 41/323 (12%)

Query: 66  VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAF 125
           VTS++ G +HSLA   +G+VWAWGRN   QLG G+   R   +   RVEGL  V   A+ 
Sbjct: 411 VTSMATGSFHSLAALGDGSVWAWGRNTYGQLGDGSTAER---HAAVRVEGLGGVRSVASA 467

Query: 126 ASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHAL 185
           A    S A+G DG++W WG++  GQLG G  +  A  P  V  L    +  V+ G  H L
Sbjct: 468 AH--HSLAVGMDGTVWAWGRNAAGQLGDGTTLDRA-RPVAVPGL--TSVTAVAAGGSHVL 522

Query: 186 AQTEDGKLFGWGYSADGRIGNLGKALESSPL-------------DSNIDRSSESDQEISS 232
           A   DG ++ WGY+A G++G+       +P+              S    + +SD  + +
Sbjct: 523 ALRSDGSVWAWGYNALGQLGDGTTVDRLTPVRVSGLGAVVAVAAGSYFSMALQSDGTVWT 582

Query: 233 STIEKAQKLVSEGMEKEKYMPIIWEPFLVEGV-EVVDIACGFDHSLVLGRNGVLLSCGSN 291
              E  +  + +G   ++  P+      VEG+  +  +A G  H+L +  +G + + G N
Sbjct: 583 WG-EGFEGQLGDGGGVQRLSPV-----RVEGLANITRVAAGSAHALAVRGDGTVWAWGDN 636

Query: 292 VYGQLGREKQDMGMFPVDINFHP--VSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNR 349
             GQLG         PV +       ++S G  HS+A+          G   + +WG+N 
Sbjct: 637 GEGQLGDGSWADRFRPVQVPGLQGITAVSGGRSHSMALQ---------GDGTVRAWGYNG 687

Query: 350 SSQL--GRMGPDNVPLVVEGLEG 370
             QL  G +     P ++ GL G
Sbjct: 688 YGQLGDGTLTSRVRPALIPGLTG 710



 Score = 97.8 bits (242), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 97/326 (29%), Positives = 143/326 (43%), Gaps = 71/326 (21%)

Query: 44  TSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALES 103
           TSL G+      P R+  L  ++ SV +G  HSLA+  +G+VW WG N+  QLG G    
Sbjct: 95  TSLQGL-----APVRLAAL-ENIVSVVSGDAHSLALGADGSVWTWGGNSSGQLGDGTTTD 148

Query: 104 RATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVP 163
           RAT   P RV GLD  +V A  A    S A+ +DG++W WG +  GQLG G      + P
Sbjct: 149 RAT---PMRVAGLD--SVVAVAAGDFHSLALREDGTVWAWGTNFHGQLGRGH-TQPGLTP 202

Query: 164 SRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRS 223
            +V  L G  +V ++ G+   LA  EDG +  WG +  G++G                  
Sbjct: 203 EQVPGLNG--VVALAAGFDFTLAVLEDGTVRAWGSNGSGQLG------------------ 242

Query: 224 SESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNG 283
                               +G   ++  P+     + E   + ++  G  H+L LG++G
Sbjct: 243 --------------------DGTSTQRLSPV----KVSELSGITEVRAGTYHALALGKDG 278

Query: 284 VLLSCGSNVYGQLGREKQDMGMFPVDINFHPVSISSGLGHSLAICEVRSSNVTGGARGIV 343
            + + GSN  GQLG    +    P+ +         GL    A+  + S ++     G V
Sbjct: 279 GVWTWGSNASGQLGDGTWNDRAVPMQV--------PGLERVKAVASMDSDSLALLDTGAV 330

Query: 344 -SWGWNRSSQLG------RMGPDNVP 362
            +WG N S QLG      R  P  VP
Sbjct: 331 FAWGANGSGQLGDGDTTDRATPGPVP 356



 Score = 97.4 bits (241), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 104/344 (30%), Positives = 151/344 (43%), Gaps = 49/344 (14%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAW 88
           V ++G    G LG  TS          P +V  L S +T V AG YH+LA+  +G VW W
Sbjct: 230 VRAWGSNGSGQLGDGTST-----QRLSPVKVSEL-SGITEVRAGTYHALALGKDGGVWTW 283

Query: 89  GRNNEVQLGRGALESRATWND---PKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGK 145
           G N   QLG G      TWND   P +V GL++V   A+  S   S A+ D G+++ WG 
Sbjct: 284 GSNASGQLGDG------TWNDRAVPMQVPGLERVKAVASMDSD--SLALLDTGAVFAWGA 335

Query: 146 SKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIG 205
           +  GQLG G D T+   P  V  L    +  V  G  HAL   +DG L+ WG    G++G
Sbjct: 336 NGSGQLGDG-DTTDRATPGPVPGL--NAVASVVGGAQHALVLRKDGTLWAWGGGLSGQLG 392

Query: 206 NLGKALESSP--------LDSNIDRSSESDQEISSSTI----EKAQKLVSEGMEKEKYMP 253
           + G      P        + S    S  S   +   ++          + +G   E++  
Sbjct: 393 HGGSERHVVPAPVMRLAGVTSMATGSFHSLAALGDGSVWAWGRNTYGQLGDGSTAERHAA 452

Query: 254 IIWEPFLVEGV-EVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDIN- 311
           +      VEG+  V  +A    HSL +G +G + + G N  GQLG         PV +  
Sbjct: 453 V-----RVEGLGGVRSVASAAHHSLAVGMDGTVWAWGRNAAGQLGDGTTLDRARPVAVPG 507

Query: 312 -FHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLG 354
                ++++G  H LA+    S         + +WG+N   QLG
Sbjct: 508 LTSVTAVAAGGSHVLALRSDGS---------VWAWGYNALGQLG 542



 Score = 92.0 bits (227), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 99/347 (28%), Positives = 150/347 (43%), Gaps = 79/347 (22%)

Query: 32   FGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRN 91
             GDG+  A  +P  +T + G              + ++SAG +H +A++ +G VW WG N
Sbjct: 991  LGDGTNHARSVPNQVTSLKG--------------IRAMSAGAHHVVALSADGTVWTWGDN 1036

Query: 92   NEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQL 151
               QLG G+      W  P++V  L  V   AA     V+  +  DG+   WG ++ GQL
Sbjct: 1037 TLGQLGDGSSSPTGMW--PRQVPELRGVEAVAAGEQFTVAVLL--DGTARAWGSNEYGQL 1092

Query: 152  GLGKDITEAIVPSRVEALAGEKI---VKVSFGWG-HALAQTEDGKLFGWGYSADGRIGNL 207
            G GK   + + P  V+ + G KI   V+    WG HA+ Q  DG +  WG +  G++G+ 
Sbjct: 1093 GDGKTGPQ-LTPMAVK-IEGPKIRPPVRTVRAWGQHAVVQMSDGTVQTWGDNTFGQLGD- 1149

Query: 208  GKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVV 267
                                     +T  +A  L   G+                   VV
Sbjct: 1150 ------------------------GTTTRRAVPLTVYGL-----------------ASVV 1168

Query: 268  DIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDIN--FHPVSISSGLGHSL 325
             ++ G  HSL L  +G + + G+N +GQLG         PV +      V+I SG  H+L
Sbjct: 1169 AVSSGAWHSLALLSDGTVWAWGANGFGQLGDGTSTPRTRPVQVAGLGDVVAIGSGGYHAL 1228

Query: 326  AICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPD--NVPLVVEGLEG 370
            A+C   S         + +WG+N   QLG    +  ++P  VEGLEG
Sbjct: 1229 AVCSDGS---------VWTWGYNAFGQLGDGTAESRSLPTRVEGLEG 1266



 Score = 92.0 bits (227), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 84/253 (33%), Positives = 123/253 (48%), Gaps = 19/253 (7%)

Query: 55   EPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVE 114
             P +V GL  DV ++ +G YH+LAV ++G+VW WG N   QLG G  ESR+    P RVE
Sbjct: 1207 RPVQVAGL-GDVVAIGSGGYHALAVCSDGSVWTWGYNAFGQLGDGTAESRSL---PTRVE 1262

Query: 115  GLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKI 174
            GL+   V A       S A+  DG+L  WG +  GQLG G   T     SRV     + +
Sbjct: 1263 GLE--GVVAVAGGDHYSLALHSDGTLSAWGNNASGQLGDGTGTTRY---SRVAVKGVDGV 1317

Query: 175  VKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKA----LESSPLDSNIDRSSESDQEI 230
            V V  G  H +A   DG ++ WG +A G++G+        L   P+ +    S+      
Sbjct: 1318 VDVRAGATHTVALRGDGTVWTWGDNAFGQLGDGASGTRMRLVPRPVPNLSSVSAVGAGAR 1377

Query: 231  SSSTIEKAQKLVSEGMEKEKYMPI-----IWEPFLV-EGVEVVDIACGFDHSLVLGRNGV 284
             +  +     + + G      + +       EP  V E  +V  ++ G D SL + R+G 
Sbjct: 1378 HTFAVALKGTVWTWGRNSHGQLGLGDNTNRTEPLRVRELSDVTVVSGGADFSLAMKRDGT 1437

Query: 285  LLSCGSNVYGQLG 297
            +LS GS++YG LG
Sbjct: 1438 VLSWGSSLYGSLG 1450



 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 101/331 (30%), Positives = 148/331 (44%), Gaps = 71/331 (21%)

Query: 29   VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAW 88
            V ++GD + G LG  T+          P  V GL S V +VS+G +HSLA+ ++G VWAW
Sbjct: 1136 VQTWGDNTFGQLGDGTTTR-----RAVPLTVYGLAS-VVAVSSGAWHSLALLSDGTVWAW 1189

Query: 89   GRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKR 148
            G N   QLG G    R     P +V GL   +V A  + G  + A+  DGS+W WG +  
Sbjct: 1190 GANGFGQLGDGTSTPR---TRPVQVAGLG--DVVAIGSGGYHALAVCSDGSVWTWGYNAF 1244

Query: 149  GQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLG 208
            GQLG G   + ++ P+RVE L  E +V V+ G  ++LA   DG L  WG +A G++G   
Sbjct: 1245 GQLGDGTAESRSL-PTRVEGL--EGVVAVAGGDHYSLALHSDGTLSAWGNNASGQLG--- 1298

Query: 209  KALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVD 268
                                               +G    +Y  +     +     VVD
Sbjct: 1299 -----------------------------------DGTGTTRYSRVA----VKGVDGVVD 1319

Query: 269  IACGFDHSLVLGRNGVLLSCGSNVYGQL--GREKQDMGMFPVDI-NFHPVS-ISSGLGHS 324
            +  G  H++ L  +G + + G N +GQL  G     M + P  + N   VS + +G  H+
Sbjct: 1320 VRAGATHTVALRGDGTVWTWGDNAFGQLGDGASGTRMRLVPRPVPNLSSVSAVGAGARHT 1379

Query: 325  LAICEVRSSNVTGGARGIV-SWGWNRSSQLG 354
             A+            +G V +WG N   QLG
Sbjct: 1380 FAVA----------LKGTVWTWGRNSHGQLG 1400



 Score = 82.0 bits (201), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 88/306 (28%), Positives = 133/306 (43%), Gaps = 64/306 (20%)

Query: 69  VSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASG 128
           ++AG  HSL ++  G VWAW          G  E+      P R+  L+  N+ +  +  
Sbjct: 63  IAAGTQHSLYLSPGGDVWAW--GGNGSGQLGGAETSLQGLAPVRLAALE--NIVSVVSGD 118

Query: 129 VVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQT 188
             S A+G DGS+W WG +  GQLG G   T+   P RV  L  + +V V+ G  H+LA  
Sbjct: 119 AHSLALGADGSVWTWGGNSSGQLGDGT-TTDRATPMRVAGL--DSVVAVAAGDFHSLALR 175

Query: 189 EDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEK 248
           EDG ++ WG +  G++G                                 +     G+  
Sbjct: 176 EDGTVWAWGTNFHGQLG---------------------------------RGHTQPGLTP 202

Query: 249 EKYMPIIWEPFLVEGVE-VVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFP 307
           E+          V G+  VV +A GFD +L +  +G + + GSN  GQLG       + P
Sbjct: 203 EQ----------VPGLNGVVALAAGFDFTLAVLEDGTVRAWGSNGSGQLGDGTSTQRLSP 252

Query: 308 VDINFHP--VSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPDN--VPL 363
           V ++       + +G  H+LA+         G   G+ +WG N S QLG    ++  VP+
Sbjct: 253 VKVSELSGITEVRAGTYHALAL---------GKDGGVWTWGSNASGQLGDGTWNDRAVPM 303

Query: 364 VVEGLE 369
            V GLE
Sbjct: 304 QVPGLE 309



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 54/145 (37%), Positives = 72/145 (49%), Gaps = 6/145 (4%)

Query: 71   AGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVV 130
            AG  H++A+  +G VW WG N   QLG GA  +R     P+ V  L  V+   A A    
Sbjct: 1322 AGATHTVALRGDGTVWTWGDNAFGQLGDGASGTRMRLV-PRPVPNLSSVSAVGAGARHTF 1380

Query: 131  SSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTED 190
            + A+   G++W WG++  GQLGLG D T    P RV  L+   +  VS G   +LA   D
Sbjct: 1381 AVAL--KGTVWTWGRNSHGQLGLG-DNTNRTEPLRVRELS--DVTVVSGGADFSLAMKRD 1435

Query: 191  GKLFGWGYSADGRIGNLGKALESSP 215
            G +  WG S  G +G       SSP
Sbjct: 1436 GTVLSWGSSLYGSLGLGATGHRSSP 1460



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 51/126 (40%), Positives = 65/126 (51%), Gaps = 9/126 (7%)

Query: 29   VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAW 88
            V ++GD + G LG   S T +      P  VP L S V++V AG  H+ AV   G VW W
Sbjct: 1336 VWTWGDNAFGQLGDGASGTRM---RLVPRPVPNL-SSVSAVGAGARHTFAVALKGTVWTW 1391

Query: 89   GRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKR 148
            GRN+  QLG G   +R    +P RV  L  V V +  A    S A+  DG++  WG S  
Sbjct: 1392 GRNSHGQLGLGDNTNR---TEPLRVRELSDVTVVSGGAD--FSLAMKRDGTVLSWGSSLY 1446

Query: 149  GQLGLG 154
            G LGLG
Sbjct: 1447 GSLGLG 1452


>gi|338533363|ref|YP_004666697.1| RCC1 repeat-containing protein [Myxococcus fulvus HW-1]
 gi|337259459|gb|AEI65619.1| RCC1 repeat-containing protein [Myxococcus fulvus HW-1]
          Length = 1379

 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 105/352 (29%), Positives = 166/352 (47%), Gaps = 35/352 (9%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAW 88
           V ++GD   G LG  T+          P +V GL + VT+++AG+ +++A   +G VWAW
Sbjct: 392 VWAWGDNEWGQLGDGTTT-----RRLTPVQVQGL-TGVTAIAAGYLYTVASKQDGTVWAW 445

Query: 89  GRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKR 148
           G N   QLG GA+  R T   P  V+GL+ +   A  AS +++ A+  DG++W WG + R
Sbjct: 446 GDNKRSQLGEGAVSQRHT---PGEVQGLEGITAIA--ASNLLTVAVRQDGTVWAWGDNAR 500

Query: 149 GQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLG 208
           GQLG G   T  + P +V+ LAG   V  S    H +A  +DG ++ WG    G++G+  
Sbjct: 501 GQLGDGT-TTRRLTPVQVQGLAGVTAVAASD--YHLVAVRQDGTVWAWGVGFWGQLGDGT 557

Query: 209 KALESSPLD-------SNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLV 261
               S+P+        + I   S     +       A    + G   +        P  V
Sbjct: 558 GMDRSTPVQVQGLTGVTAIAAGSNHTVALRQDGTVWAWGFNNYGQLGDGTTAGHLTPVQV 617

Query: 262 EGVE-VVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDIN--FHPVSIS 318
            GV   V IA G  H++ L ++G + + G N++GQLG         PV +      ++I+
Sbjct: 618 PGVTGAVAIAAGGSHTVALLQDGTVWTWGYNIWGQLGDGTTTHRHSPVQVQGLADVIAIA 677

Query: 319 SGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPDN--VPLVVEGL 368
           +  GH++A+ +  +         + +WG N S QLG         P+ V GL
Sbjct: 678 TNNGHTVAVRQDGT---------VWTWGLNSSGQLGDGTTTQRLTPVQVHGL 720



 Score =  114 bits (286), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 96/332 (28%), Positives = 163/332 (49%), Gaps = 38/332 (11%)

Query: 56   PTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEG 115
            P +V GL  DVT+++AG YH  A   +G +W WG N+  QLG G L  R     P +V+G
Sbjct: 918  PVQVQGL-MDVTAMAAGGYHMAAAGQDGTLWTWGLNSYGQLGGGPLSYRLL---PVQVQG 973

Query: 116  LDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIV 175
            L  ++V A  A G   +A G DG+LW WG +  GQLG G  +++++ P +V+      + 
Sbjct: 974  L--MSVTAMAAGGYHMAAAGQDGTLWTWGLNSYGQLG-GGPLSQSLTPVQVQVQGLTGVA 1030

Query: 176  KVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLD----SNIDRSSESDQEIS 231
             ++ G+ H LA  +DG ++ WG +A G++G+   A   +P+     + +   S  D    
Sbjct: 1031 AIAAGFSHTLAVRQDGTVWSWGGNAYGQLGDGTTAQSLTPVQVQGLTGVTAISAGDAHTV 1090

Query: 232  S----STI----EKAQKLVSEGMEKEKYMPIIWEPFLVEGVE-VVDIACGFDHSLVLGRN 282
            +     T+      +   + +G    +  P+      V+G+  V+ IA G  H++ L ++
Sbjct: 1091 ALRRDGTVWAWGRNSWGQLGDGTTTHRATPV-----QVQGLTGVIAIAAGSLHTVALRQD 1145

Query: 283  GVLLSCGSNVYGQLGREKQDMGMFPVDIN--FHPVSISSGLGHSLAICEVRSSNVTGGAR 340
            G + + G N +GQLG         PV +      ++I++G  H++A+ +  +        
Sbjct: 1146 GTVWAWGRNSWGQLGDGTTTHRATPVQVQGLTGVIAIAAGSLHTVALRQDGT-------- 1197

Query: 341  GIVSWGWNRSSQLGRMGPDN--VPLVVEGLEG 370
             + +WG+N   QLG         P  V+GL G
Sbjct: 1198 -VWAWGFNDLGQLGDGTTTRRLTPAQVQGLTG 1228



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 99/344 (28%), Positives = 164/344 (47%), Gaps = 46/344 (13%)

Query: 29   VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAW 88
            V S+G  + G LG  T+       +  P +V GL + VT++SAG  H++A+  +G VWAW
Sbjct: 1048 VWSWGGNAYGQLGDGTT-----AQSLTPVQVQGL-TGVTAISAGDAHTVALRRDGTVWAW 1101

Query: 89   GRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKR 148
            GRN+  QLG G    RAT   P +V+GL    V A  A  + + A+  DG++W WG++  
Sbjct: 1102 GRNSWGQLGDGTTTHRAT---PVQVQGL--TGVIAIAAGSLHTVALRQDGTVWAWGRNSW 1156

Query: 149  GQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLG 208
            GQLG G   T    P +V+ L G  ++ ++ G  H +A  +DG ++ WG++    +G LG
Sbjct: 1157 GQLGDGT-TTHRATPVQVQGLTG--VIAIAAGSLHTVALRQDGTVWAWGFN---DLGQLG 1210

Query: 209  KALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIW------------ 256
                +  L     +       I++     A   V +      +   +W            
Sbjct: 1211 DGTTTRRLTPAQVQGLTGVTTIAAGYFHTA--AVRQDGTAWTWGFNLWGQLGDGTFTDRA 1268

Query: 257  EPFLVEGVE-VVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDIN--FH 313
             P  V+G+  V  +A G+ H++V+G +G + + G+N   QLG         PV +     
Sbjct: 1269 TPVQVQGLTGVSALAAGYAHTVVVGEDGTVWAWGNNSGTQLGNGSSTDRSTPVQVEALTG 1328

Query: 314  PVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMG 357
              S+++G  H++A+    +            WGW R++ LG++G
Sbjct: 1329 AFSLAAGRFHTVAMSPDGA-----------GWGWGRNN-LGQVG 1360



 Score =  104 bits (260), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 100/343 (29%), Positives = 161/343 (46%), Gaps = 45/343 (13%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAW 88
           V ++G G  G LG      G G D   P +V GL + VT+++AG  H++A+  +G VWAW
Sbjct: 542 VWAWGVGFWGQLG-----DGTGMDRSTPVQVQGL-TGVTAIAAGSNHTVALRQDGTVWAW 595

Query: 89  GRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKR 148
           G NN  QLG G      T   P +V G+      AA  S  V  A+  DG++W WG +  
Sbjct: 596 GFNNYGQLGDGTTAGHLT---PVQVPGVTGAVAIAAGGSHTV--ALLQDGTVWTWGYNIW 650

Query: 149 GQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLG 208
           GQLG G   T    P +V+ LA   ++ ++   GH +A  +DG ++ WG ++ G++G+  
Sbjct: 651 GQLGDGT-TTHRHSPVQVQGLA--DVIAIATNNGHTVAVRQDGTVWTWGLNSSGQLGDGT 707

Query: 209 KALESSPLDSNIDRSSESDQEISSSTIEKAQK------------LVSEGMEKEKYMPIIW 256
                +P+  +    + +    SS T+   Q              + +G    +  P+  
Sbjct: 708 TTQRLTPVQVHGLTDATAILTSSSQTVAMRQDRTLWAWGDNHWGQLGDGTTTRRLTPV-- 765

Query: 257 EPFLVEGV-EVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDIN---- 311
               V+G+ +V  +A G  H    G++G L + G N YGQLG       + PV +     
Sbjct: 766 ---QVQGLMDVTAMAAGGYHMAAAGQDGTLWTWGLNSYGQLGGGPLSYRLLPVQVQGLTS 822

Query: 312 FHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLG 354
               +I++G  H++A+ +  +         + +WG N S QLG
Sbjct: 823 ATATAIAAGDSHTVAVRQDGT---------VWAWGSNFSGQLG 856



 Score =  100 bits (250), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 103/403 (25%), Positives = 176/403 (43%), Gaps = 91/403 (22%)

Query: 31  SFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGR 90
           ++G  S+G LG  T+       +Y P +V GL + VT+++A   H++A+  +G +WAWG 
Sbjct: 294 AWGSNSRGQLGNGTTF-----GSYRPEQVQGL-TGVTAIAASGIHTVALRQDGTLWAWGN 347

Query: 91  NNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQ 150
           N+  QLG G    R T   P +V+GL  V   AA     V+S    DG++W WG ++ GQ
Sbjct: 348 NSSGQLGDGTTTVRFT---PVQVQGLTGVTAIAAGYLYTVASK--QDGTVWAWGDNEWGQ 402

Query: 151 LGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKA 210
           LG G   T  + P +V+ L G  +  ++ G+ + +A  +DG ++ WG   D +   LG+ 
Sbjct: 403 LGDGT-TTRRLTPVQVQGLTG--VTAIAAGYLYTVASKQDGTVWAWG---DNKRSQLGEG 456

Query: 211 LESSPLDSNIDRSSESDQEISSSTI---------------EKAQKLVSEGMEKEKYMPI- 254
             S        +  E    I++S +               + A+  + +G    +  P+ 
Sbjct: 457 AVSQRHTPGEVQGLEGITAIAASNLLTVAVRQDGTVWAWGDNARGQLGDGTTTRRLTPVQ 516

Query: 255 -------------------------IW-------------------EPFLVEGVE-VVDI 269
                                    +W                    P  V+G+  V  I
Sbjct: 517 VQGLAGVTAVAASDYHLVAVRQDGTVWAWGVGFWGQLGDGTGMDRSTPVQVQGLTGVTAI 576

Query: 270 ACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDIN--FHPVSISSGLGHSLAI 327
           A G +H++ L ++G + + G N YGQLG       + PV +      V+I++G  H++A+
Sbjct: 577 AAGSNHTVALRQDGTVWAWGFNNYGQLGDGTTAGHLTPVQVPGVTGAVAIAAGGSHTVAL 636

Query: 328 CEVRSSNVTGGARGIVSWGWNRSSQL--GRMGPDNVPLVVEGL 368
            +  +         + +WG+N   QL  G     + P+ V+GL
Sbjct: 637 LQDGT---------VWTWGYNIWGQLGDGTTTHRHSPVQVQGL 670



 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 107/390 (27%), Positives = 177/390 (45%), Gaps = 43/390 (11%)

Query: 6    SVVHNH----VNVLTSRIFMRSASGTAVVSFGDGSQGALGLPTSLTGVGGDA-----YEP 56
            +  H H    V  L   I + + +G  V    DG+    GL +S  G  GD        P
Sbjct: 657  TTTHRHSPVQVQGLADVIAIATNNGHTVAVRQDGTVWTWGLNSS--GQLGDGTTTQRLTP 714

Query: 57   TRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGL 116
             +V GL +D T++      ++A+  +  +WAWG N+  QLG G    R T   P +V+GL
Sbjct: 715  VQVHGL-TDATAILTSSSQTVAMRQDRTLWAWGDNHWGQLGDGTTTRRLT---PVQVQGL 770

Query: 117  DQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVK 176
              ++V A  A G   +A G DG+LW WG +  GQLG G  ++  ++P +V+ L       
Sbjct: 771  --MDVTAMAAGGYHMAAAGQDGTLWTWGLNSYGQLG-GGPLSYRLLPVQVQGLTSATATA 827

Query: 177  VSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNI----DRSSESDQEISS 232
            ++ G  H +A  +DG ++ WG +  G++G+   A   +P+   +    D ++ +      
Sbjct: 828  IAAGDSHTVAVRQDGTVWAWGSNFSGQLGDGTTAQSLTPVQVQVQGLMDVTAMAAGGYHM 887

Query: 233  STIEKAQKLVSEGMEKEKYM---PIIWE--PFLVEGV-EVVDIACGFDHSLVLGRNGVLL 286
            +   +   L + G+     +   P+ +   P  V+G+ +V  +A G  H    G++G L 
Sbjct: 888  AAAGQDGTLWTWGLNSYGQLGGGPLSYRLLPVQVQGLMDVTAMAAGGYHMAAAGQDGTLW 947

Query: 287  SCGSNVYGQLGREKQDMGMFPVDIN-FHPVSISSGLGHSLAICEVRSSNVTGGARGIVSW 345
            + G N YGQLG       + PV +     V+  +  G+ +A      +        + +W
Sbjct: 948  TWGLNSYGQLGGGPLSYRLLPVQVQGLMSVTAMAAGGYHMAAAGQDGT--------LWTW 999

Query: 346  GWNRSSQLGRMGP-----DNVPLVVEGLEG 370
            G N   QLG  GP       V + V+GL G
Sbjct: 1000 GLNSYGQLGG-GPLSQSLTPVQVQVQGLTG 1028



 Score = 97.8 bits (242), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 102/349 (29%), Positives = 151/349 (43%), Gaps = 69/349 (19%)

Query: 26  GTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAV 85
           G  V ++GD   G LG  TS          P +V GL + V ++SA    ++A+  +G V
Sbjct: 189 GGTVWTWGDNLVGQLGDGTST-----QRLTPVQVQGL-TGVIAISANDSETVALRQDGTV 242

Query: 86  WAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGK 145
           WAWG N+  QLG G    R T   P +V GL    V A  A G  + A+  DG+LW WG 
Sbjct: 243 WAWGNNSSGQLGDGTTTVRFT---PVQVLGL--TGVTAIAAGGGFAVALRQDGTLWAWGS 297

Query: 146 SKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIG 205
           + RGQLG G     +  P +V+ L G   +  S    H +A  +DG L+ WG ++ G++G
Sbjct: 298 NSRGQLGNGTTF-GSYRPEQVQGLTGVTAIAASG--IHTVALRQDGTLWAWGNNSSGQLG 354

Query: 206 NLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVE 265
                                                 +G    ++ P+      V+G+ 
Sbjct: 355 --------------------------------------DGTTTVRFTPV-----QVQGLT 371

Query: 266 -VVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFHPVSISSGLGHS 324
            V  IA G+ +++   ++G + + G N +GQLG       + PV +         GL   
Sbjct: 372 GVTAIAAGYLYTVASKQDGTVWAWGDNEWGQLGDGTTTRRLTPVQVQ--------GLTGV 423

Query: 325 LAICEVRSSNVTGGARGIV-SWGWNRSSQLGR--MGPDNVPLVVEGLEG 370
            AI       V     G V +WG N+ SQLG   +   + P  V+GLEG
Sbjct: 424 TAIAAGYLYTVASKQDGTVWAWGDNKRSQLGEGAVSQRHTPGEVQGLEG 472



 Score = 95.1 bits (235), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 94/328 (28%), Positives = 149/328 (45%), Gaps = 30/328 (9%)

Query: 54  YEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRV 113
           + P +V    +  T+++AG YH++A + +G VW WGRN+  QLG G    R +   P +V
Sbjct: 114 FSPVQVM---TGATAIAAGIYHTVAASQDGTVWTWGRNSSGQLGDGTSIQRFS---PVQV 167

Query: 114 EGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEK 173
           +GL  V   AA  +   S+A+G  G++W WG +  GQLG G   T+ + P +V+ L G  
Sbjct: 168 QGLTGVTAVAAGRN--HSAALGQGGTVWTWGDNLVGQLGDGTS-TQRLTPVQVQGLTG-- 222

Query: 174 IVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLD-------SNIDRSSES 226
           ++ +S      +A  +DG ++ WG ++ G++G+    +  +P+        + I      
Sbjct: 223 VIAISANDSETVALRQDGTVWAWGNNSSGQLGDGTTTVRFTPVQVLGLTGVTAIAAGGGF 282

Query: 227 DQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVE-VVDIACGFDHSLVLGRNGVL 285
              +       A    S G          + P  V+G+  V  IA    H++ L ++G L
Sbjct: 283 AVALRQDGTLWAWGSNSRGQLGNGTTFGSYRPEQVQGLTGVTAIAASGIHTVALRQDGTL 342

Query: 286 LSCGSNVYGQLGREKQDMGMFPVDINFHPVSISSGLGHSLAICEVRSSNVTGGARGIV-S 344
            + G+N  GQLG            + F PV +  GL    AI       V     G V +
Sbjct: 343 WAWGNNSSGQLGDGT-------TTVRFTPVQV-QGLTGVTAIAAGYLYTVASKQDGTVWA 394

Query: 345 WGWNRSSQLGRMGPDN--VPLVVEGLEG 370
           WG N   QLG         P+ V+GL G
Sbjct: 395 WGDNEWGQLGDGTTTRRLTPVQVQGLTG 422



 Score = 91.3 bits (225), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 62/163 (38%), Positives = 94/163 (57%), Gaps = 11/163 (6%)

Query: 56   PTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEG 115
            P +V GL + VT+++AG++H+ AV  +G  W WG N   QLG G    RAT   P +V+G
Sbjct: 1220 PAQVQGL-TGVTTIAAGYFHTAAVRQDGTAWTWGFNLWGQLGDGTFTDRAT---PVQVQG 1275

Query: 116  LDQVNVCAA-FASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKI 174
            L  V+  AA +A  VV   +G+DG++W WG +   QLG G   T+   P +VEAL G   
Sbjct: 1276 LTGVSALAAGYAHTVV---VGEDGTVWAWGNNSGTQLGNGSS-TDRSTPVQVEALTGA-- 1329

Query: 175  VKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLD 217
              ++ G  H +A + DG  +GWG +  G++G+   A   +P++
Sbjct: 1330 FSLAAGRFHTVAMSPDGAGWGWGRNNLGQVGDGTTADRPTPVN 1372



 Score = 84.3 bits (207), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 91/316 (28%), Positives = 147/316 (46%), Gaps = 47/316 (14%)

Query: 75  HSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSS-A 133
           H+LAV  +G VWAWG N++ QLG G    R +   P +V     +    A A+G+  + A
Sbjct: 84  HTLAVRQDGTVWAWGNNDDGQLGDGTTTRRFS---PVQV-----MTGATAIAAGIYHTVA 135

Query: 134 IGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKL 193
              DG++W WG++  GQLG G  I +   P +V+ L G  +  V+ G  H+ A  + G +
Sbjct: 136 ASQDGTVWTWGRNSSGQLGDGTSI-QRFSPVQVQGLTG--VTAVAAGRNHSAALGQGGTV 192

Query: 194 FGWGYSADGRIGNLGKALESSPLD----SNIDRSSESDQE---ISSSTIEKAQKLVSEGM 246
           + WG +  G++G+       +P+     + +   S +D E   +       A    S G 
Sbjct: 193 WTWGDNLVGQLGDGTSTQRLTPVQVQGLTGVIAISANDSETVALRQDGTVWAWGNNSSGQ 252

Query: 247 EKEKYMPIIWEPFLVEGVE-VVDIACGFDHSLVLGRNGVLLSCGSNVYGQLG-------- 297
             +    + + P  V G+  V  IA G   ++ L ++G L + GSN  GQLG        
Sbjct: 253 LGDGTTTVRFTPVQVLGLTGVTAIAAGGGFAVALRQDGTLWAWGSNSRGQLGNGTTFGSY 312

Query: 298 REKQDMGMFPVDINFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMG 357
           R +Q  G+  V       +I++   H++A+ +  +         + +WG N S QLG  G
Sbjct: 313 RPEQVQGLTGV------TAIAASGIHTVALRQDGT---------LWAWGNNSSGQLGD-G 356

Query: 358 PDNV---PLVVEGLEG 370
              V   P+ V+GL G
Sbjct: 357 TTTVRFTPVQVQGLTG 372



 Score = 62.0 bits (149), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 45/121 (37%), Positives = 66/121 (54%), Gaps = 9/121 (7%)

Query: 52   DAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPK 111
            D   P +V GL + V++++AG+ H++ V  +G VWAWG N+  QLG G+   R+T   P 
Sbjct: 1266 DRATPVQVQGL-TGVSALAAGYAHTVVVGEDGTVWAWGNNSGTQLGNGSSTDRST---PV 1321

Query: 112  RVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAG 171
            +VE L      AA     V  A+  DG+ W WG++  GQ+G   D T A  P+ V  +  
Sbjct: 1322 QVEALTGAFSLAAGRFHTV--AMSPDGAGWGWGRNNLGQVG---DGTTADRPTPVNVMVQ 1376

Query: 172  E 172
            E
Sbjct: 1377 E 1377



 Score = 62.0 bits (149), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 72/272 (26%), Positives = 110/272 (40%), Gaps = 69/272 (25%)

Query: 111 KRVEGLDQVNVCAAFASGVVSS-------AIGDDGSLWVWGKSKRGQLGLGKDITEAIVP 163
           +   GL   N  AA A  V+++       A+  DG++W WG +  GQLG   D T     
Sbjct: 58  RTAPGLQGANAFAAPAGPVLAAGNGNHTLAVRQDGTVWAWGNNDDGQLG---DGTTTRRF 114

Query: 164 SRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRS 223
           S V+ + G   +       H +A ++DG ++ WG ++ G++G                  
Sbjct: 115 SPVQVMTGATAIAAGI--YHTVAASQDGTVWTWGRNSSGQLG------------------ 154

Query: 224 SESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVE-VVDIACGFDHSLVLGRN 282
                               +G   +++ P+      V+G+  V  +A G +HS  LG+ 
Sbjct: 155 --------------------DGTSIQRFSPV-----QVQGLTGVTAVAAGRNHSAALGQG 189

Query: 283 GVLLSCGSNVYGQLGREKQDMGMFPVDINFHPVSISSGLGHSLAICEVRSSNVTGGARGI 342
           G + + G N+ GQLG       + PV +         GL   +AI    S  V     G 
Sbjct: 190 GTVWTWGDNLVGQLGDGTSTQRLTPVQVQ--------GLTGVIAISANDSETVALRQDGT 241

Query: 343 V-SWGWNRSSQLGRMGPDNV---PLVVEGLEG 370
           V +WG N S QLG  G   V   P+ V GL G
Sbjct: 242 VWAWGNNSSGQLGD-GTTTVRFTPVQVLGLTG 272


>gi|296486675|tpg|DAA28788.1| TPA: hect domain and RLD 6-like isoform 1 [Bos taurus]
          Length = 980

 Score =  118 bits (296), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 86/273 (31%), Positives = 131/273 (47%), Gaps = 45/273 (16%)

Query: 28  AVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPS-DVTSVSAGHYHSLAVTNNGAVW 86
            V S GD S+G LG   +  G      +P R+P L + +V  VS G  HSLAV + G V+
Sbjct: 43  TVQSCGDNSRGQLGRKGTPRG-----EQPERIPALETLNVALVSCGKEHSLAVCHKGRVF 97

Query: 87  AWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKS 146
           AWG  +E QLG G  E + T   PK+++ L  + +         S A+ +DG ++ WG +
Sbjct: 98  AWGAASEGQLGIG--EFKETTFIPKKIKTLAGIKIIQVACGHYHSVALSEDGQVFSWGTN 155

Query: 147 KRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGN 206
             GQLGLGK+      P RV +L G  + +V+ G  H+ A +  G  FGWG ++ G++  
Sbjct: 156 SHGQLGLGKEFPSQASPQRVRSLEGIPLAQVAAGGHHSFALSLSGTSFGWGSNSAGQLAL 215

Query: 207 LGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEV 266
            G    ++P+                                ++Y P+        G  V
Sbjct: 216 SGN---NAPV--------------------------------QRYKPVSIGALKTLG--V 238

Query: 267 VDIACGFDHSLVLGRNGVLLSCGSNVYGQLGRE 299
           V I+CG+ H+ VL ++G + + G N YGQLG +
Sbjct: 239 VSISCGYKHTAVLTQDGKVFTFGDNSYGQLGHD 271



 Score = 82.4 bits (202), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 60/195 (30%), Positives = 100/195 (51%), Gaps = 19/195 (9%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPS-----DVTSVSAGHYHSLAVTNNG 83
           V ++G  S+G LG+        G+  E T +P          +  V+ GHYHS+A++ +G
Sbjct: 96  VFAWGAASEGQLGI--------GEFKETTFIPKKIKTLAGIKIIQVACGHYHSVALSEDG 147

Query: 84  AVWAWGRNNEVQLGRGA-LESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWV 142
            V++WG N+  QLG G    S+A+   P+RV  L+ + +    A G  S A+   G+ + 
Sbjct: 148 QVFSWGTNSHGQLGLGKEFPSQAS---PQRVRSLEGIPLAQVAAGGHHSFALSLSGTSFG 204

Query: 143 WGKSKRGQLGLGKD--ITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSA 200
           WG +  GQL L  +    +   P  + AL    +V +S G+ H    T+DGK+F +G ++
Sbjct: 205 WGSNSAGQLALSGNNAPVQRYKPVSIGALKTLGVVSISCGYKHTAVLTQDGKVFTFGDNS 264

Query: 201 DGRIGNLGKALESSP 215
            G++G+   A +  P
Sbjct: 265 YGQLGHDPTAEKRGP 279



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 61/236 (25%), Positives = 103/236 (43%), Gaps = 63/236 (26%)

Query: 137 DGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGW 196
           DG++   G + RGQLG  K       P R+ AL    +  VS G  H+LA    G++F W
Sbjct: 41  DGTVQSCGDNSRGQLG-RKGTPRGEQPERIPALETLNVALVSCGKEHSLAVCHKGRVFAW 99

Query: 197 GYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIW 256
           G +++G++G +G+  E++ +   I                                    
Sbjct: 100 GAASEGQLG-IGEFKETTFIPKKIKT---------------------------------- 124

Query: 257 EPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFHPV- 315
               + G++++ +ACG  HS+ L  +G + S G+N +GQLG  K+    FP   +   V 
Sbjct: 125 ----LAGIKIIQVACGHYHSVALSEDGQVFSWGTNSHGQLGLGKE----FPSQASPQRVR 176

Query: 316 --------SISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPDNVPL 363
                    +++G  HS A+      +++G + G   WG N + QL   G +N P+
Sbjct: 177 SLEGIPLAQVAAGGHHSFAL------SLSGTSFG---WGSNSAGQLALSG-NNAPV 222



 Score = 42.4 bits (98), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 33/98 (33%), Positives = 47/98 (47%), Gaps = 4/98 (4%)

Query: 20  FMRSASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPS-DVTSVSAGHYHSLA 78
           F  S SGT   SFG GS  A  L  S        Y+P  +  L +  V S+S G+ H+  
Sbjct: 194 FALSLSGT---SFGWGSNSAGQLALSGNNAPVQRYKPVSIGALKTLGVVSISCGYKHTAV 250

Query: 79  VTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGL 116
           +T +G V+ +G N+  QLG      +      +R+EGL
Sbjct: 251 LTQDGKVFTFGDNSYGQLGHDPTAEKRGPQLVERIEGL 288


>gi|296486676|tpg|DAA28789.1| TPA: hect domain and RLD 6-like isoform 2 [Bos taurus]
          Length = 1016

 Score =  118 bits (296), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 86/273 (31%), Positives = 131/273 (47%), Gaps = 45/273 (16%)

Query: 28  AVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPS-DVTSVSAGHYHSLAVTNNGAVW 86
            V S GD S+G LG   +  G      +P R+P L + +V  VS G  HSLAV + G V+
Sbjct: 43  TVQSCGDNSRGQLGRKGTPRG-----EQPERIPALETLNVALVSCGKEHSLAVCHKGRVF 97

Query: 87  AWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKS 146
           AWG  +E QLG G  E + T   PK+++ L  + +         S A+ +DG ++ WG +
Sbjct: 98  AWGAASEGQLGIG--EFKETTFIPKKIKTLAGIKIIQVACGHYHSVALSEDGQVFSWGTN 155

Query: 147 KRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGN 206
             GQLGLGK+      P RV +L G  + +V+ G  H+ A +  G  FGWG ++ G++  
Sbjct: 156 SHGQLGLGKEFPSQASPQRVRSLEGIPLAQVAAGGHHSFALSLSGTSFGWGSNSAGQLAL 215

Query: 207 LGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEV 266
            G    ++P+                                ++Y P+        G  V
Sbjct: 216 SGN---NAPV--------------------------------QRYKPVSIGALKTLG--V 238

Query: 267 VDIACGFDHSLVLGRNGVLLSCGSNVYGQLGRE 299
           V I+CG+ H+ VL ++G + + G N YGQLG +
Sbjct: 239 VSISCGYKHTAVLTQDGKVFTFGDNSYGQLGHD 271



 Score = 82.4 bits (202), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 60/195 (30%), Positives = 100/195 (51%), Gaps = 19/195 (9%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPS-----DVTSVSAGHYHSLAVTNNG 83
           V ++G  S+G LG+        G+  E T +P          +  V+ GHYHS+A++ +G
Sbjct: 96  VFAWGAASEGQLGI--------GEFKETTFIPKKIKTLAGIKIIQVACGHYHSVALSEDG 147

Query: 84  AVWAWGRNNEVQLGRGA-LESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWV 142
            V++WG N+  QLG G    S+A+   P+RV  L+ + +    A G  S A+   G+ + 
Sbjct: 148 QVFSWGTNSHGQLGLGKEFPSQAS---PQRVRSLEGIPLAQVAAGGHHSFALSLSGTSFG 204

Query: 143 WGKSKRGQLGLGKD--ITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSA 200
           WG +  GQL L  +    +   P  + AL    +V +S G+ H    T+DGK+F +G ++
Sbjct: 205 WGSNSAGQLALSGNNAPVQRYKPVSIGALKTLGVVSISCGYKHTAVLTQDGKVFTFGDNS 264

Query: 201 DGRIGNLGKALESSP 215
            G++G+   A +  P
Sbjct: 265 YGQLGHDPTAEKRGP 279



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 61/236 (25%), Positives = 103/236 (43%), Gaps = 63/236 (26%)

Query: 137 DGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGW 196
           DG++   G + RGQLG  K       P R+ AL    +  VS G  H+LA    G++F W
Sbjct: 41  DGTVQSCGDNSRGQLG-RKGTPRGEQPERIPALETLNVALVSCGKEHSLAVCHKGRVFAW 99

Query: 197 GYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIW 256
           G +++G++G +G+  E++ +   I                                    
Sbjct: 100 GAASEGQLG-IGEFKETTFIPKKIKT---------------------------------- 124

Query: 257 EPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFHPV- 315
               + G++++ +ACG  HS+ L  +G + S G+N +GQLG  K+    FP   +   V 
Sbjct: 125 ----LAGIKIIQVACGHYHSVALSEDGQVFSWGTNSHGQLGLGKE----FPSQASPQRVR 176

Query: 316 --------SISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPDNVPL 363
                    +++G  HS A+      +++G + G   WG N + QL   G +N P+
Sbjct: 177 SLEGIPLAQVAAGGHHSFAL------SLSGTSFG---WGSNSAGQLALSG-NNAPV 222



 Score = 42.4 bits (98), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 33/98 (33%), Positives = 47/98 (47%), Gaps = 4/98 (4%)

Query: 20  FMRSASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPS-DVTSVSAGHYHSLA 78
           F  S SGT   SFG GS  A  L  S        Y+P  +  L +  V S+S G+ H+  
Sbjct: 194 FALSLSGT---SFGWGSNSAGQLALSGNNAPVQRYKPVSIGALKTLGVVSISCGYKHTAV 250

Query: 79  VTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGL 116
           +T +G V+ +G N+  QLG      +      +R+EGL
Sbjct: 251 LTQDGKVFTFGDNSYGQLGHDPTAEKRGPQLVERIEGL 288


>gi|300798276|ref|NP_001179573.1| probable E3 ubiquitin-protein ligase HERC6 [Bos taurus]
          Length = 1016

 Score =  118 bits (296), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 86/273 (31%), Positives = 131/273 (47%), Gaps = 45/273 (16%)

Query: 28  AVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPS-DVTSVSAGHYHSLAVTNNGAVW 86
            V S GD S+G LG   +  G      +P R+P L + +V  VS G  HSLAV + G V+
Sbjct: 43  TVQSCGDNSRGQLGRKGTPRG-----EQPERIPALETLNVALVSCGKEHSLAVCHKGRVF 97

Query: 87  AWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKS 146
           AWG  +E QLG G  E + T   PK+++ L  + +         S A+ +DG ++ WG +
Sbjct: 98  AWGAASEGQLGIG--EFKETTFIPKKIKTLAGIKIIQVACGHYHSVALSEDGQVFSWGTN 155

Query: 147 KRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGN 206
             GQLGLGK+      P RV +L G  + +V+ G  H+ A +  G  FGWG ++ G++  
Sbjct: 156 SHGQLGLGKEFPSQASPQRVRSLEGIPLAQVAAGGHHSFALSLSGTSFGWGSNSAGQLAL 215

Query: 207 LGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEV 266
            G    ++P+                                ++Y P+        G  V
Sbjct: 216 SGN---NAPV--------------------------------QRYKPVSIGALKTLG--V 238

Query: 267 VDIACGFDHSLVLGRNGVLLSCGSNVYGQLGRE 299
           V I+CG+ H+ VL ++G + + G N YGQLG +
Sbjct: 239 VSISCGYKHTAVLTQDGKVFTFGDNSYGQLGHD 271



 Score = 82.4 bits (202), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 60/195 (30%), Positives = 100/195 (51%), Gaps = 19/195 (9%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPS-----DVTSVSAGHYHSLAVTNNG 83
           V ++G  S+G LG+        G+  E T +P          +  V+ GHYHS+A++ +G
Sbjct: 96  VFAWGAASEGQLGI--------GEFKETTFIPKKIKTLAGIKIIQVACGHYHSVALSEDG 147

Query: 84  AVWAWGRNNEVQLGRGA-LESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWV 142
            V++WG N+  QLG G    S+A+   P+RV  L+ + +    A G  S A+   G+ + 
Sbjct: 148 QVFSWGTNSHGQLGLGKEFPSQAS---PQRVRSLEGIPLAQVAAGGHHSFALSLSGTSFG 204

Query: 143 WGKSKRGQLGLGKD--ITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSA 200
           WG +  GQL L  +    +   P  + AL    +V +S G+ H    T+DGK+F +G ++
Sbjct: 205 WGSNSAGQLALSGNNAPVQRYKPVSIGALKTLGVVSISCGYKHTAVLTQDGKVFTFGDNS 264

Query: 201 DGRIGNLGKALESSP 215
            G++G+   A +  P
Sbjct: 265 YGQLGHDPTAEKRGP 279



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 61/236 (25%), Positives = 103/236 (43%), Gaps = 63/236 (26%)

Query: 137 DGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGW 196
           DG++   G + RGQLG  K       P R+ AL    +  VS G  H+LA    G++F W
Sbjct: 41  DGTVQSCGDNSRGQLG-RKGTPRGEQPERIPALETLNVALVSCGKEHSLAVCHKGRVFAW 99

Query: 197 GYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIW 256
           G +++G++G +G+  E++ +   I                                    
Sbjct: 100 GAASEGQLG-IGEFKETTFIPKKIKT---------------------------------- 124

Query: 257 EPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFHPV- 315
               + G++++ +ACG  HS+ L  +G + S G+N +GQLG  K+    FP   +   V 
Sbjct: 125 ----LAGIKIIQVACGHYHSVALSEDGQVFSWGTNSHGQLGLGKE----FPSQASPQRVR 176

Query: 316 --------SISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPDNVPL 363
                    +++G  HS A+      +++G + G   WG N + QL   G +N P+
Sbjct: 177 SLEGIPLAQVAAGGHHSFAL------SLSGTSFG---WGSNSAGQLALSG-NNAPV 222



 Score = 42.4 bits (98), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 33/98 (33%), Positives = 47/98 (47%), Gaps = 4/98 (4%)

Query: 20  FMRSASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPS-DVTSVSAGHYHSLA 78
           F  S SGT   SFG GS  A  L  S        Y+P  +  L +  V S+S G+ H+  
Sbjct: 194 FALSLSGT---SFGWGSNSAGQLALSGNNAPVQRYKPVSIGALKTLGVVSISCGYKHTAV 250

Query: 79  VTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGL 116
           +T +G V+ +G N+  QLG      +      +R+EGL
Sbjct: 251 LTQDGKVFTFGDNSYGQLGHDPTAEKRGPQLVERIEGL 288


>gi|386813626|ref|ZP_10100850.1| conserved hypothetical protein [planctomycete KSU-1]
 gi|386403123|dbj|GAB63731.1| conserved hypothetical protein [planctomycete KSU-1]
          Length = 407

 Score =  118 bits (295), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 101/330 (30%), Positives = 154/330 (46%), Gaps = 69/330 (20%)

Query: 28  AVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWA 87
            V+++G    G LG      G   D   P +V  L ++VT+++ G +HS+A+T++G VW 
Sbjct: 78  TVLTWGQNMHGQLG-----DGTNTDRKIPVQVKDL-NNVTAIAGGAWHSVALTSDGTVWT 131

Query: 88  WGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSK 147
           WG N   QLG G  +SR   N P +V  L   N+ A  + G+ + A+  DG++W WG++ 
Sbjct: 132 WGSNWAGQLGDGTTKSR---NKPVQVNNLK--NITAIASKGLHNLALKSDGTVWTWGRNI 186

Query: 148 RGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNL 207
            GQLG G   T+   P +  +L    I+ ++ G  H+LAQ  DG ++ WG +  G++G  
Sbjct: 187 YGQLGDGT-TTDRNTPVQTRSL--NTIISIAGGGYHSLAQKADGTIWTWGLNQYGQLG-- 241

Query: 208 GKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVV 267
                              D  I++ TI                      P LV G++ V
Sbjct: 242 -------------------DGTITNRTI----------------------PVLVNGIKDV 260

Query: 268 D-IACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDIN--FHPVSISSGLGHS 324
             I CG DHS+VL  NG +   G N +GQLG    D    PV +    + ++I  G  HS
Sbjct: 261 SMIRCGGDHSIVLKNNGTIWIWGFNQHGQLGDRSTDNRSTPVPMGDLKNIMTIDGGGDHS 320

Query: 325 LAICEVRSSNVTGGARGIVSWGWNRSSQLG 354
           L +    +         + +WG N + QLG
Sbjct: 321 LILKSDGT---------VWTWGNNENGQLG 341



 Score = 85.1 bits (209), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 71/255 (27%), Positives = 117/255 (45%), Gaps = 25/255 (9%)

Query: 55  EPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVE 114
           +P +V  L  ++T++++   H+LA+ ++G VW WGRN   QLG G    R   N P +  
Sbjct: 150 KPVQVNNL-KNITAIASKGLHNLALKSDGTVWTWGRNIYGQLGDGTTTDR---NTPVQTR 205

Query: 115 GLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKI 174
            L+   + +    G  S A   DG++W WG ++ GQLG G  IT   +P  V  +    +
Sbjct: 206 SLN--TIISIAGGGYHSLAQKADGTIWTWGLNQYGQLGDGT-ITNRTIPVLVNGIKDVSM 262

Query: 175 VKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLD-SNIDRSSESDQEISSS 233
           ++   G  H++    +G ++ WG++  G++G+      S+P+   ++      D     S
Sbjct: 263 IRC--GGDHSIVLKNNGTIWIWGFNQHGQLGDRSTDNRSTPVPMGDLKNIMTIDGGGDHS 320

Query: 234 TIEKAQKLV-----------SEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRN 282
            I K+   V            +G    +  PI           V  IA G  HS+ L  +
Sbjct: 321 LILKSDGTVWTWGNNENGQLGDGTTMSRATPIQASTL----SNVTAIASGEQHSIALKSD 376

Query: 283 GVLLSCGSNVYGQLG 297
           G + + GSN  GQLG
Sbjct: 377 GTIWAWGSNRNGQLG 391



 Score = 84.3 bits (207), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 89/306 (29%), Positives = 130/306 (42%), Gaps = 61/306 (19%)

Query: 57  TRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGL 116
           TR+P   S +  VS G +HS+A+ ++G V  WG+N   QLG G    R     P +V+ L
Sbjct: 51  TRIPIFASTILQVSGGSFHSIALKSDGTVLTWGQNMHGQLGDGTNTDRKI---PVQVKDL 107

Query: 117 DQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVK 176
           +  NV A       S A+  DG++W WG +  GQLG G   +    P +V  L  + I  
Sbjct: 108 N--NVTAIAGGAWHSVALTSDGTVWTWGSNWAGQLGDGTTKSRN-KPVQVNNL--KNITA 162

Query: 177 VSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIE 236
           ++    H LA   DG ++ WG +  G++G+      ++P+ +   RS  +          
Sbjct: 163 IASKGLHNLALKSDGTVWTWGRNIYGQLGDGTTTDRNTPVQT---RSLNT---------- 209

Query: 237 KAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQL 296
                                        ++ IA G  HSL    +G + + G N YGQL
Sbjct: 210 -----------------------------IISIAGGGYHSLAQKADGTIWTWGLNQYGQL 240

Query: 297 GREKQDMGMFPVDIN-FHPVS-ISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLG 354
           G         PV +N    VS I  G  HS+    V  +N T     I  WG+N+  QLG
Sbjct: 241 GDGTITNRTIPVLVNGIKDVSMIRCGGDHSI----VLKNNGT-----IWIWGFNQHGQLG 291

Query: 355 RMGPDN 360
               DN
Sbjct: 292 DRSTDN 297



 Score = 77.0 bits (188), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 48/161 (29%), Positives = 84/161 (52%), Gaps = 9/161 (5%)

Query: 56  PTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEG 115
           P  V G+  DV+ +  G  HS+ + NNG +W WG N   QLG  + ++R+T      V  
Sbjct: 251 PVLVNGI-KDVSMIRCGGDHSIVLKNNGTIWIWGFNQHGQLGDRSTDNRST-----PVPM 304

Query: 116 LDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIV 175
            D  N+      G  S  +  DG++W WG ++ GQLG G  ++ A   + ++A     + 
Sbjct: 305 GDLKNIMTIDGGGDHSLILKSDGTVWTWGNNENGQLGDGTTMSRA---TPIQASTLSNVT 361

Query: 176 KVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPL 216
            ++ G  H++A   DG ++ WG + +G++G+   +  S+P+
Sbjct: 362 AIASGEQHSIALKSDGTIWAWGSNRNGQLGDGSISNRSTPV 402



 Score = 49.3 bits (116), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 27/79 (34%), Positives = 48/79 (60%), Gaps = 6/79 (7%)

Query: 28  AVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWA 87
            V ++G+   G LG  T+++        P +   L S+VT++++G  HS+A+ ++G +WA
Sbjct: 328 TVWTWGNNENGQLGDGTTMS-----RATPIQASTL-SNVTAIASGEQHSIALKSDGTIWA 381

Query: 88  WGRNNEVQLGRGALESRAT 106
           WG N   QLG G++ +R+T
Sbjct: 382 WGSNRNGQLGDGSISNRST 400


>gi|338534909|ref|YP_004668243.1| RCC1 repeat-containing protein [Myxococcus fulvus HW-1]
 gi|337261005|gb|AEI67165.1| RCC1 repeat-containing protein [Myxococcus fulvus HW-1]
          Length = 862

 Score =  118 bits (295), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 106/359 (29%), Positives = 176/359 (49%), Gaps = 45/359 (12%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAW 88
           V ++GD + G LG  T       +   P +VPGL + VT+++AG YH+LAV  +G VWAW
Sbjct: 178 VWAWGDNAWGQLGDGTRT-----NRLTPVQVPGL-TGVTAIAAGDYHTLAVRQDGTVWAW 231

Query: 89  GRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKR 148
           G N   QLG G    R T   P +V GL  V   +A  S  V  A+  DG++W WG +  
Sbjct: 232 GNNALGQLGDGTYTERLT---PVQVPGLTGVTAISAGESHTV--AVRQDGTVWAWGDNVW 286

Query: 149 GQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLG 208
           GQLG G   T+ + P +V  L+G  +  ++ G  H  A  +DG ++ WG +  G++G+  
Sbjct: 287 GQLGDGTR-TDRLTPVQVPGLSG--VTAIAEGRRHTFAVRQDGTVWAWGLNFWGQLGDGT 343

Query: 209 KALESSPLD----SNIDRSSESDQEI----SSSTI----EKAQKLVSEGMEKEKYMPIIW 256
           ++   +P+     +++   +  D          T+    +     + +G   ++  P+  
Sbjct: 344 RSDRLTPVQVPDLTSVTAIAAGDYHTLAVRQDGTVWAWGDNVWGQLGDGTYTDRLTPV-- 401

Query: 257 EPFLVEGVE-VVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDI-NFHP 314
               V G+  V  IA G  H++ + ++G + + G NV+GQLG       + PV + +   
Sbjct: 402 ---QVPGLTGVTAIAAGESHTVAMRQDGTVWAWGDNVWGQLGDGTYTDRLTPVQVPDLTS 458

Query: 315 VS-ISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQL--GRMGPDNVPLVVEGLEG 370
           V+ I++G  H+LA+ +  +         + +WG+N   QL  G       P++V GL G
Sbjct: 459 VTAIAAGDYHTLAVRQDGT---------VCAWGFNAYGQLGDGTSSRSPSPVMVPGLTG 508



 Score =  111 bits (277), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 107/365 (29%), Positives = 167/365 (45%), Gaps = 48/365 (13%)

Query: 18  RIFMRSASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSL 77
             F  S  GT V ++GD   G LG      G   D + P ++P L + VT+++AG  H+ 
Sbjct: 118 HTFAVSQDGT-VWAWGDNDWGQLG-----DGTRADRHTPVQLPEL-TGVTAIAAGRRHTF 170

Query: 78  AVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDD 137
           AV  +G VWAWG N   QLG G   +R T   P +V GL    V A  A    + A+  D
Sbjct: 171 AVRQDGTVWAWGDNAWGQLGDGTRTNRLT---PVQVPGL--TGVTAIAAGDYHTLAVRQD 225

Query: 138 GSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWG 197
           G++W WG +  GQLG G   TE + P +V  L G  +  +S G  H +A  +DG ++ WG
Sbjct: 226 GTVWAWGNNALGQLGDGT-YTERLTPVQVPGLTG--VTAISAGESHTVAVRQDGTVWAWG 282

Query: 198 YSADGRIGNLGKALESSPLD-------SNIDRSSESDQEISSSTIEKAQKL-----VSEG 245
            +  G++G+  +    +P+        + I         +       A  L     + +G
Sbjct: 283 DNVWGQLGDGTRTDRLTPVQVPGLSGVTAIAEGRRHTFAVRQDGTVWAWGLNFWGQLGDG 342

Query: 246 MEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGM 305
              ++  P+   P L     V  IA G  H+L + ++G + + G NV+GQLG       +
Sbjct: 343 TRSDRLTPVQ-VPDL---TSVTAIAAGDYHTLAVRQDGTVWAWGDNVWGQLGDGTYTDRL 398

Query: 306 FPVDIN--FHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLG------RMG 357
            PV +       +I++G  H++A+ +  +         + +WG N   QLG      R+ 
Sbjct: 399 TPVQVPGLTGVTAIAAGESHTVAMRQDGT---------VWAWGDNVWGQLGDGTYTDRLT 449

Query: 358 PDNVP 362
           P  VP
Sbjct: 450 PVQVP 454



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 104/352 (29%), Positives = 159/352 (45%), Gaps = 47/352 (13%)

Query: 31  SFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGR 90
           ++G+ + G LG  T       D   P +VPGL + VT+V+AG +H+ AV  +G VWAWG 
Sbjct: 30  AWGNNAWGQLGDGTRT-----DRLTPVQVPGL-TGVTAVAAGRHHTFAVRQDGTVWAWGL 83

Query: 91  NNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQ 150
           N   QLG G    R T   P +V GL  V   AA        A+  DG++W WG +  GQ
Sbjct: 84  NVWGQLGDGTHTERHT---PVQVPGLTGVTAIAAGRRHTF--AVSQDGTVWAWGDNDWGQ 138

Query: 151 LGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKA 210
           LG G    +   P ++  L G  +  ++ G  H  A  +DG ++ WG +A G++G+  + 
Sbjct: 139 LGDGTR-ADRHTPVQLPELTG--VTAIAAGRRHTFAVRQDGTVWAWGDNAWGQLGDGTRT 195

Query: 211 LESSPLD----SNIDRSSESDQEI----SSSTI----EKAQKLVSEGMEKEKYMPIIWEP 258
              +P+     + +   +  D          T+      A   + +G   E+  P+    
Sbjct: 196 NRLTPVQVPGLTGVTAIAAGDYHTLAVRQDGTVWAWGNNALGQLGDGTYTERLTPV---- 251

Query: 259 FLVEGVE-VVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFHPVSI 317
             V G+  V  I+ G  H++ + ++G + + G NV+GQLG   +   + PV +       
Sbjct: 252 -QVPGLTGVTAISAGESHTVAVRQDGTVWAWGDNVWGQLGDGTRTDRLTPVQV------- 303

Query: 318 SSGLGHSLAICEVRSSNVTGGARGIV-SWGWNRSSQLG------RMGPDNVP 362
             GL    AI E R         G V +WG N   QLG      R+ P  VP
Sbjct: 304 -PGLSGVTAIAEGRRHTFAVRQDGTVWAWGLNFWGQLGDGTRSDRLTPVQVP 354



 Score =  105 bits (261), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 96/337 (28%), Positives = 161/337 (47%), Gaps = 41/337 (12%)

Query: 55  EPTRVPGLP--SDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKR 112
            P  VPGL   +   +++AG  H++AV  +G VWAWG N   QLG GA   R     P +
Sbjct: 499 SPVMVPGLTGVTVFAALAAGDSHTVAVMQDGTVWAWGLNASGQLGDGATIDRRI---PVQ 555

Query: 113 VEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGE 172
           + GL  V   AA ++  +  A G DG++W WG +  GQLG G   T  + P +V  L G 
Sbjct: 556 IPGLAGVTAIAAGSAHTL--AAGQDGAVWSWGANSYGQLGDGT-TTHRLSPVQVPGLTG- 611

Query: 173 KIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISS 232
            +  ++ G  H++A  +DG +  WG ++ G++G+   A   +P+  +      +    S 
Sbjct: 612 -VSAMAAGDAHSVALLQDGTVSAWGRNSWGQLGDGTTAARLTPVQVHGLTGVTAVAAGSL 670

Query: 233 STIEKAQK------------LVSEGMEKEKYMPIIWEPFLVEGV-EVVDIACGFDHSLVL 279
            T+   Q              + +G    +  P+      V+G+ +V  IA G+ H++ +
Sbjct: 671 HTVALRQDGTVWAWGYNDLGQLGDGTTTRRLAPV-----QVQGLTDVTAIAAGYFHTVAV 725

Query: 280 GRNGVLLSCGSNVYGQLGREKQDMGMFPVDIN-FHPVS-ISSGLGHSLAICEVRSSNVTG 337
            ++G + + G N++GQLG         PV +     VS +++G  H++A+ +  +     
Sbjct: 726 RQDGTVWAWGYNLWGQLGDGSSTARSTPVQVQELTGVSALAAGYAHTVAVKQDGT----- 780

Query: 338 GARGIVSWGWNRSSQLGRMGPDN--VPLVVEGLEGES 372
               + +WG N  +QLG     +   P+ VEGL G S
Sbjct: 781 ----VWAWGNNSGTQLGNGSSTDRYTPVWVEGLTGVS 813



 Score =  102 bits (253), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 95/326 (29%), Positives = 149/326 (45%), Gaps = 44/326 (13%)

Query: 58  RVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLD 117
           +VPGL + VT+ +AG YH++AV  +G  WAWG N   QLG G    R T   P +V GL 
Sbjct: 2   QVPGL-TGVTATTAGEYHTVAVRQDGTAWAWGNNAWGQLGDGTRTDRLT---PVQVPGLT 57

Query: 118 QVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKV 177
            V   AA        A+  DG++W WG +  GQLG G   TE   P +V  L G  +  +
Sbjct: 58  GVTAVAAGRHHTF--AVRQDGTVWAWGLNVWGQLGDGTH-TERHTPVQVPGLTG--VTAI 112

Query: 178 SFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLD-------SNIDRSSESDQEI 230
           + G  H  A ++DG ++ WG +  G++G+  +A   +P+        + I         +
Sbjct: 113 AAGRRHTFAVSQDGTVWAWGDNDWGQLGDGTRADRHTPVQLPELTGVTAIAAGRRHTFAV 172

Query: 231 SSSTI-----EKAQKLVSEGMEKEKYMPIIWEPFLVEGVE-VVDIACGFDHSLVLGRNGV 284
                     + A   + +G    +  P+      V G+  V  IA G  H+L + ++G 
Sbjct: 173 RQDGTVWAWGDNAWGQLGDGTRTNRLTPV-----QVPGLTGVTAIAAGDYHTLAVRQDGT 227

Query: 285 LLSCGSNVYGQLGREKQDMGMFPVDIN--FHPVSISSGLGHSLAICEVRSSNVTGGARGI 342
           + + G+N  GQLG       + PV +       +IS+G  H++A+ +  +         +
Sbjct: 228 VWAWGNNALGQLGDGTYTERLTPVQVPGLTGVTAISAGESHTVAVRQDGT---------V 278

Query: 343 VSWGWNRSSQLG------RMGPDNVP 362
            +WG N   QLG      R+ P  VP
Sbjct: 279 WAWGDNVWGQLGDGTRTDRLTPVQVP 304



 Score = 85.1 bits (209), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 80/283 (28%), Positives = 125/283 (44%), Gaps = 58/283 (20%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAW 88
           V ++G  S G LG  T+   +      P +V GL + VT+V+AG  H++A+  +G VWAW
Sbjct: 631 VSAWGRNSWGQLGDGTTAARL-----TPVQVHGL-TGVTAVAAGSLHTVALRQDGTVWAW 684

Query: 89  GRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKR 148
           G N+  QLG G    R     P +V+GL  V   AA     V  A+  DG++W WG +  
Sbjct: 685 GYNDLGQLGDGTTTRRLA---PVQVQGLTDVTAIAAGYFHTV--AVRQDGTVWAWGYNLW 739

Query: 149 GQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLG 208
           GQLG G     +  P +V+ L G  +  ++ G+ H +A  +DG ++ WG ++  ++GN  
Sbjct: 740 GQLGDGSSTARS-TPVQVQELTG--VSALAAGYAHTVAVKQDGTVWAWGNNSGTQLGN-- 794

Query: 209 KALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVE-VV 267
                                               G   ++Y P+      VEG+  V 
Sbjct: 795 ------------------------------------GSSTDRYTPV-----WVEGLTGVS 813

Query: 268 DIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDI 310
            +  G  H+  +   G   + G N +GQ+G         PVD+
Sbjct: 814 ALTAGRFHTAAVSPEGFGWAWGRNNFGQVGDGTTADRPRPVDV 856



 Score = 83.6 bits (205), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 60/169 (35%), Positives = 94/169 (55%), Gaps = 9/169 (5%)

Query: 56  PTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEG 115
           P +V GL +DVT+++AG++H++AV  +G VWAWG N   QLG G+  +R+T   P +V+ 
Sbjct: 703 PVQVQGL-TDVTAIAAGYFHTVAVRQDGTVWAWGYNLWGQLGDGSSTARST---PVQVQE 758

Query: 116 LDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIV 175
           L  V+  AA  +  V  A+  DG++W WG +   QLG G   T+   P  VE L G  + 
Sbjct: 759 LTGVSALAAGYAHTV--AVKQDGTVWAWGNNSGTQLGNGSS-TDRYTPVWVEGLTG--VS 813

Query: 176 KVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSS 224
            ++ G  H  A + +G  + WG +  G++G+   A    P+D  I   +
Sbjct: 814 ALTAGRFHTAAVSPEGFGWAWGRNNFGQVGDGTTADRPRPVDVVIQEGT 862


>gi|222530522|ref|YP_002574404.1| chromosome condensation regulator RCC1 [Caldicellulosiruptor bescii
           DSM 6725]
 gi|222457369|gb|ACM61631.1| regulator of chromosome condensation RCC1 [Caldicellulosiruptor
           bescii DSM 6725]
          Length = 363

 Score =  117 bits (294), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 111/342 (32%), Positives = 169/342 (49%), Gaps = 35/342 (10%)

Query: 25  SGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGA 84
           S  +V ++G    G LG+       GG    P RV GL  D+  VSAG  H+LA+  +G 
Sbjct: 19  SDGSVWAWGSNWNGELGIGEK----GGIFATPVRVKGL-EDIVMVSAGKDHNLALRRDGT 73

Query: 85  VWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWG 144
           VWAWGRN   QLG G  ES+     P +V+GL  V + AA A G  S A+  DG++WVWG
Sbjct: 74  VWAWGRNEGGQLGDGTRESKLV---PVQVKGLKDVVMVAA-AEG-HSLALKRDGTIWVWG 128

Query: 145 KSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRI 204
            +  G LGL + +T   VP +VE L   +IV ++       A  +DG++  WG      +
Sbjct: 129 FNSDGVLGLNEIVTHCEVPLKVEGLG--EIVSIATNRYLVFALRKDGRIVAWGEKRYKYL 186

Query: 205 G---NLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGM-------EKEKYMPI 254
               +L    +   +D   D  + +  E  +  + +  ++++ G+       E ++  P+
Sbjct: 187 CGDIDLWDKRKFIIIDKLEDIVAIALGENHAVALRQDGRVLTWGVFEYDLWRENKRIFPV 246

Query: 255 IWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFHP 314
           + E  L+E V +  IA G+ H+LV+  +G + + G N  GQLG       +FPV +    
Sbjct: 247 LIERELLEDVRM--IAAGYKHALVVKGDGSVWAWGMNRRGQLGDGTVVSKVFPVRVRGIE 304

Query: 315 --VSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLG 354
             VSIS G  H++A+ E  S         I  WG+N   Q+G
Sbjct: 305 GVVSISGGGWHTVAVKEDGS---------IWGWGFNYFGQVG 337



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 95/321 (29%), Positives = 167/321 (52%), Gaps = 37/321 (11%)

Query: 67  TSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFA 126
             VS G  ++LAV ++G+VWAWG N   +LG G  E    +  P RV+GL+ + + +A  
Sbjct: 5   VQVSCGDNYTLAVLSDGSVWAWGSNWNGELGIG--EKGGIFATPVRVKGLEDIVMVSAGK 62

Query: 127 SGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALA 186
               + A+  DG++W WG+++ GQLG G   ++ +VP +V+ L  + +V V+   GH+LA
Sbjct: 63  DH--NLALRRDGTVWAWGRNEGGQLGDGTRESK-LVPVQVKGL--KDVVMVAAAEGHSLA 117

Query: 187 QTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSE----SDQEISSSTIEKAQKLV 242
              DG ++ WG+++DG +G L + +    +   ++   E    +        + K  ++V
Sbjct: 118 LKRDGTIWVWGFNSDGVLG-LNEIVTHCEVPLKVEGLGEIVSIATNRYLVFALRKDGRIV 176

Query: 243 SEGMEKEKYMP---IIWEP---FLVEGVE-VVDIACGFDHSLVLGRNGVLLSCGSNVYGQ 295
           + G ++ KY+     +W+     +++ +E +V IA G +H++ L ++G +L+ G   Y  
Sbjct: 177 AWGEKRYKYLCGDIDLWDKRKFIIIDKLEDIVAIALGENHAVALRQDGRVLTWGVFEY-D 235

Query: 296 LGREKQDMGMFPVDINFHPVS----ISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSS 351
           L RE +   +FPV I    +     I++G  H+L         V  G   + +WG NR  
Sbjct: 236 LWRENKR--IFPVLIERELLEDVRMIAAGYKHAL---------VVKGDGSVWAWGMNRRG 284

Query: 352 QL--GRMGPDNVPLVVEGLEG 370
           QL  G +     P+ V G+EG
Sbjct: 285 QLGDGTVVSKVFPVRVRGIEG 305



 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 46/151 (30%), Positives = 78/151 (51%), Gaps = 25/151 (16%)

Query: 64  SDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRV-------EGL 116
            D+ +++ G  H++A+  +G V  WG           +     W + KR+       E L
Sbjct: 205 EDIVAIALGENHAVALRQDGRVLTWG-----------VFEYDLWRENKRIFPVLIERELL 253

Query: 117 DQVNVCAA-FASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIV 175
           + V + AA +   +V   +  DGS+W WG ++RGQLG G  +   + P RV  + G  +V
Sbjct: 254 EDVRMIAAGYKHALV---VKGDGSVWAWGMNRRGQLGDGT-VVSKVFPVRVRGIEG--VV 307

Query: 176 KVSFGWGHALAQTEDGKLFGWGYSADGRIGN 206
            +S G  H +A  EDG ++GWG++  G++G+
Sbjct: 308 SISGGGWHTVAVKEDGSIWGWGFNYFGQVGS 338


>gi|222530526|ref|YP_002574408.1| chromosome condensation regulator RCC1 [Caldicellulosiruptor bescii
           DSM 6725]
 gi|222457373|gb|ACM61635.1| regulator of chromosome condensation RCC1 [Caldicellulosiruptor
           bescii DSM 6725]
          Length = 363

 Score =  117 bits (294), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 112/342 (32%), Positives = 169/342 (49%), Gaps = 35/342 (10%)

Query: 25  SGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGA 84
           S  +V ++G    G LG+       GG    P RV GL  D+  VSAG  H+LA+  +G 
Sbjct: 19  SDGSVWAWGSNWNGELGIGEK----GGIFATPVRVKGL-EDIVMVSAGKDHNLALRRDGT 73

Query: 85  VWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWG 144
           VWAWGRN   QLG G  ES+     P +V+GL  V + AA A G  S A+  DG++WVWG
Sbjct: 74  VWAWGRNEGGQLGDGTRESKLV---PVQVKGLKDVVMVAA-AEG-HSLALKRDGTIWVWG 128

Query: 145 KSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWG---YSAD 201
            +  G LGL + +T   VP +VE L   +IV ++       A  +DG++  WG   Y   
Sbjct: 129 FNSDGVLGLNEIVTHCEVPLKVEGLG--EIVSIATNRYLVFALRKDGRIVAWGERRYKYL 186

Query: 202 GRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGM-------EKEKYMPI 254
               +L    +   +D   D  + +  E  +  + +  ++++ G+       E ++  P+
Sbjct: 187 CGDIDLWDKRKFIIIDKLEDIVAIALGENHAVALRQDGRVLTWGVFEYDLWRENKRIFPV 246

Query: 255 IWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFHP 314
           + E  L+E V +  IA G+ H+LV+  +G + + G N  GQLG       +FPV +    
Sbjct: 247 LIERELLEDVRM--IAAGYKHALVVKGDGSVWAWGMNRRGQLGDGTVVSKVFPVRVKGIE 304

Query: 315 --VSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLG 354
             VSIS G  H++A+ E  S         I  WG+N   Q+G
Sbjct: 305 GVVSISGGGWHTVAVKEDGS---------IWGWGFNYFGQVG 337



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 95/321 (29%), Positives = 167/321 (52%), Gaps = 37/321 (11%)

Query: 67  TSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFA 126
             VS G  ++LAV ++G+VWAWG N   +LG G  E    +  P RV+GL+ + + +A  
Sbjct: 5   VQVSCGDNYTLAVLSDGSVWAWGSNWNGELGIG--EKGGIFATPVRVKGLEDIVMVSAGK 62

Query: 127 SGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALA 186
               + A+  DG++W WG+++ GQLG G   ++ +VP +V+ L  + +V V+   GH+LA
Sbjct: 63  DH--NLALRRDGTVWAWGRNEGGQLGDGTRESK-LVPVQVKGL--KDVVMVAAAEGHSLA 117

Query: 187 QTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSE----SDQEISSSTIEKAQKLV 242
              DG ++ WG+++DG +G L + +    +   ++   E    +        + K  ++V
Sbjct: 118 LKRDGTIWVWGFNSDGVLG-LNEIVTHCEVPLKVEGLGEIVSIATNRYLVFALRKDGRIV 176

Query: 243 SEGMEKEKYMP---IIWEP---FLVEGVE-VVDIACGFDHSLVLGRNGVLLSCGSNVYGQ 295
           + G  + KY+     +W+     +++ +E +V IA G +H++ L ++G +L+ G   Y  
Sbjct: 177 AWGERRYKYLCGDIDLWDKRKFIIIDKLEDIVAIALGENHAVALRQDGRVLTWGVFEY-D 235

Query: 296 LGREKQDMGMFPVDINFHPVS----ISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSS 351
           L RE +   +FPV I    +     I++G  H+L         V  G   + +WG NR  
Sbjct: 236 LWRENKR--IFPVLIERELLEDVRMIAAGYKHAL---------VVKGDGSVWAWGMNRRG 284

Query: 352 QL--GRMGPDNVPLVVEGLEG 370
           QL  G +     P+ V+G+EG
Sbjct: 285 QLGDGTVVSKVFPVRVKGIEG 305



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 46/151 (30%), Positives = 79/151 (52%), Gaps = 25/151 (16%)

Query: 64  SDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRV-------EGL 116
            D+ +++ G  H++A+  +G V  WG           +     W + KR+       E L
Sbjct: 205 EDIVAIALGENHAVALRQDGRVLTWG-----------VFEYDLWRENKRIFPVLIERELL 253

Query: 117 DQVNVCAA-FASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIV 175
           + V + AA +   +V   +  DGS+W WG ++RGQLG G  +   + P RV+ + G  +V
Sbjct: 254 EDVRMIAAGYKHALV---VKGDGSVWAWGMNRRGQLGDGT-VVSKVFPVRVKGIEG--VV 307

Query: 176 KVSFGWGHALAQTEDGKLFGWGYSADGRIGN 206
            +S G  H +A  EDG ++GWG++  G++G+
Sbjct: 308 SISGGGWHTVAVKEDGSIWGWGFNYFGQVGS 338


>gi|146295351|ref|YP_001179122.1| regulator of chromosome condensation, RCC1 [Caldicellulosiruptor
           saccharolyticus DSM 8903]
 gi|145408927|gb|ABP65931.1| regulator of chromosome condensation, RCC1 [Caldicellulosiruptor
           saccharolyticus DSM 8903]
          Length = 363

 Score =  117 bits (294), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 111/342 (32%), Positives = 169/342 (49%), Gaps = 35/342 (10%)

Query: 25  SGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGA 84
           S  +V ++G    G LG+       GG    P RV GL  D+  VSAG  H+LA+  +G 
Sbjct: 19  SDGSVWAWGSNWNGELGIGEK----GGIFATPVRVKGL-EDIVMVSAGKDHNLALRRDGT 73

Query: 85  VWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWG 144
           VWAWGRN   QLG G  ES+     P +V+GL  V + AA A G  S A+  DG++WVWG
Sbjct: 74  VWAWGRNEGGQLGDGTRESKLV---PVQVKGLKDVVMVAA-AEG-HSLALKRDGTIWVWG 128

Query: 145 KSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRI 204
            +  G LGL + +T   VP +VE L   +IV ++       A  +DG++  WG      +
Sbjct: 129 FNSDGVLGLNEIVTHCEVPLKVEGLG--EIVSIATNRYLVFALRKDGRIVAWGERRYKHL 186

Query: 205 G---NLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGM-------EKEKYMPI 254
               +L    +   +D   D  + +  E  +  + +  ++++ G+       E ++  P+
Sbjct: 187 CGDIDLWDKRKFIIIDKLEDIVAIALGENHAVALRQDGRVLTWGVFEYDLWRENKRIFPV 246

Query: 255 IWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFHP 314
           + E  L+E V +  IA G+ H+LV+  +G + + G N  GQLG       +FPV +    
Sbjct: 247 LIERELLEDVRM--IAAGYKHALVVKGDGSVWAWGMNRRGQLGDGTVVSKVFPVRVRGIE 304

Query: 315 --VSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLG 354
             VSIS G  H++A+ E  S         I  WG+N   Q+G
Sbjct: 305 GVVSISGGGWHTVAVKEDGS---------IWGWGFNYFGQVG 337



 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 94/321 (29%), Positives = 166/321 (51%), Gaps = 37/321 (11%)

Query: 67  TSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFA 126
             VS G  ++LAV ++G+VWAWG N   +LG G  E    +  P RV+GL+ + + +A  
Sbjct: 5   VQVSCGDNYTLAVLSDGSVWAWGSNWNGELGIG--EKGGIFATPVRVKGLEDIVMVSAGK 62

Query: 127 SGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALA 186
               + A+  DG++W WG+++ GQLG G   ++ +VP +V+ L  + +V V+   GH+LA
Sbjct: 63  DH--NLALRRDGTVWAWGRNEGGQLGDGTRESK-LVPVQVKGL--KDVVMVAAAEGHSLA 117

Query: 187 QTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSE----SDQEISSSTIEKAQKLV 242
              DG ++ WG+++DG +G L + +    +   ++   E    +        + K  ++V
Sbjct: 118 LKRDGTIWVWGFNSDGVLG-LNEIVTHCEVPLKVEGLGEIVSIATNRYLVFALRKDGRIV 176

Query: 243 SEGMEKEKYMP---IIWEP---FLVEGVE-VVDIACGFDHSLVLGRNGVLLSCGSNVYGQ 295
           + G  + K++     +W+     +++ +E +V IA G +H++ L ++G +L+ G   Y  
Sbjct: 177 AWGERRYKHLCGDIDLWDKRKFIIIDKLEDIVAIALGENHAVALRQDGRVLTWGVFEY-D 235

Query: 296 LGREKQDMGMFPVDINFHPVS----ISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSS 351
           L RE +   +FPV I    +     I++G  H+L         V  G   + +WG NR  
Sbjct: 236 LWRENKR--IFPVLIERELLEDVRMIAAGYKHAL---------VVKGDGSVWAWGMNRRG 284

Query: 352 QL--GRMGPDNVPLVVEGLEG 370
           QL  G +     P+ V G+EG
Sbjct: 285 QLGDGTVVSKVFPVRVRGIEG 305



 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 46/151 (30%), Positives = 78/151 (51%), Gaps = 25/151 (16%)

Query: 64  SDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRV-------EGL 116
            D+ +++ G  H++A+  +G V  WG           +     W + KR+       E L
Sbjct: 205 EDIVAIALGENHAVALRQDGRVLTWG-----------VFEYDLWRENKRIFPVLIERELL 253

Query: 117 DQVNVCAA-FASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIV 175
           + V + AA +   +V   +  DGS+W WG ++RGQLG G  +   + P RV  + G  +V
Sbjct: 254 EDVRMIAAGYKHALV---VKGDGSVWAWGMNRRGQLGDGT-VVSKVFPVRVRGIEG--VV 307

Query: 176 KVSFGWGHALAQTEDGKLFGWGYSADGRIGN 206
            +S G  H +A  EDG ++GWG++  G++G+
Sbjct: 308 SISGGGWHTVAVKEDGSIWGWGFNYFGQVGS 338


>gi|444911351|ref|ZP_21231526.1| BNR repeat domain protein [Cystobacter fuscus DSM 2262]
 gi|444718109|gb|ELW58925.1| BNR repeat domain protein [Cystobacter fuscus DSM 2262]
          Length = 1085

 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 106/302 (35%), Positives = 146/302 (48%), Gaps = 64/302 (21%)

Query: 56  PTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEG 115
           P +VPG PS +  V+AG  HSLAV ++G VWAWG N   +LG G    R     P +V+G
Sbjct: 730 PVQVPG-PSAMKGVAAGGSHSLAVRSDGTVWAWGNNGSGELGDGTGLQRP---RPVQVQG 785

Query: 116 LDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIV 175
           L   +  A  A    S A+  DG++W WG + +GQLG G  IT   VP RV  L G  ++
Sbjct: 786 LG--SAVAVSAGTNHSLAVQSDGTVWAWGGNSQGQLGDGTGITR-YVPVRVSGLNG--VM 840

Query: 176 KVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTI 235
            VS G  H+LA   DG ++ WGY+  G++G+                        ++ST 
Sbjct: 841 AVSAGSAHSLALRSDGTVWAWGYNFYGQLGD------------------------ATST- 875

Query: 236 EKAQKLVSEGMEKEKYMPIIWEPFLVEGVE-VVDIACGFDHSLVLGRNGVLLSCGSNVYG 294
              Q+LV               P  V G+  VV IA G  HSL +  +G + + G N YG
Sbjct: 876 ---QRLV---------------PIQVPGLTGVVSIAAGTHHSLAVRSDGTVWAWGYNFYG 917

Query: 295 QLGREKQDMGMFPVDINFHP--VSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQ 352
           QLG   +     PV +      VS+++G  HSLA+     SN T     + +WG+N   Q
Sbjct: 918 QLGDGTKIQRSPPVQVPGLAGMVSVAAGTYHSLAV----HSNGT-----VWAWGYNNHGQ 968

Query: 353 LG 354
           LG
Sbjct: 969 LG 970



 Score =  112 bits (279), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 115/357 (32%), Positives = 170/357 (47%), Gaps = 35/357 (9%)

Query: 8   VHNHVNVLTSRIFMRSASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVT 67
           VH  ++  TS      A GT V ++GD + G LG  T+          P +VPGL + V 
Sbjct: 439 VHT-LSATTSHSLAARADGT-VWAWGDNAFGQLGDGTTT-----QRLLPVQVPGL-AGVD 490

Query: 68  SVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFAS 127
           +VS+ H HSLAV+ +G VWAWG N   +LG G   SR T   P +V GL   ++ A  A 
Sbjct: 491 TVSSMHQHSLAVSRDGTVWAWGFNGSGRLGDGTTLSRLT---PVQVPGLS--SMVAVAAG 545

Query: 128 GVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQ 187
              S A+  DG++W WG +  G LG G  +   + P +V  L+G  +V ++ G G++LA 
Sbjct: 546 STHSLALRADGTVWAWGDNSNGALGDGTTLRR-LSPVQVPGLSG--VVALAAGNGYSLAV 602

Query: 188 TEDGKLFGWGYSADGRIGNLGKALESSPLD----SNIDRSSESDQE---ISSSTIEKAQK 240
              G ++ WGY+  G++G+       +P      S +   +  D     + +  +  A  
Sbjct: 603 DAQGSVWAWGYNGMGQLGDGTTTPRVTPTQAPALSGVVALAAGDSHSLALRADGVAWAWG 662

Query: 241 LVSEGMEKEKYMPIIWEPFLVEGV-EVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGRE 299
              +G   +        P  V G+  VV +A G  HSLVL  +G   S G+N YGQLG  
Sbjct: 663 GNDQGQLGDATTLERSTPAAVPGLAHVVALAAGNAHSLVLHADGTSSSWGNNAYGQLGDG 722

Query: 300 KQDMGMFPVDINFHPV--SISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLG 354
              +   PV +        +++G  HSLA   VRS         + +WG N S +LG
Sbjct: 723 TSTLHPVPVQVPGPSAMKGVAAGGSHSLA---VRSDGT------VWAWGNNGSGELG 770



 Score =  110 bits (276), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 108/327 (33%), Positives = 151/327 (46%), Gaps = 66/327 (20%)

Query: 29   VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAW 88
            V ++G+   G LG      G G     P +V GL S V +VSAG  HSLAV ++G VWAW
Sbjct: 758  VWAWGNNGSGELG-----DGTGLQRPRPVQVQGLGSAV-AVSAGTNHSLAVQSDGTVWAW 811

Query: 89   GRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKR 148
            G N++ QLG G   +R     P RV GL+   V A  A    S A+  DG++W WG +  
Sbjct: 812  GGNSQGQLGDGTGITRYV---PVRVSGLN--GVMAVSAGSAHSLALRSDGTVWAWGYNFY 866

Query: 149  GQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLG 208
            GQLG     T+ +VP +V  L G  +V ++ G  H+LA   DG ++ WGY+  G++G+ G
Sbjct: 867  GQLGDATS-TQRLVPIQVPGLTG--VVSIAAGTHHSLAVRSDGTVWAWGYNFYGQLGD-G 922

Query: 209  KALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVE-VV 267
              ++ SP                                          P  V G+  +V
Sbjct: 923  TKIQRSP------------------------------------------PVQVPGLAGMV 940

Query: 268  DIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFHPVSISSGLGHSLAI 327
             +A G  HSL +  NG + + G N +GQLG       + PV     P+S SSG+   +A 
Sbjct: 941  SVAAGTYHSLAVHSNGTVWAWGYNNHGQLGDGTTTQRLLPV-----PISSSSGV---IAA 992

Query: 328  CEVRSSNVTGGARGIVSWGWNRSSQLG 354
                 S V      +  WG N +SQLG
Sbjct: 993  AANWHSLVVRTDGTVWGWGSNNASQLG 1019



 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 101/328 (30%), Positives = 154/328 (46%), Gaps = 44/328 (13%)

Query: 56  PTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEG 115
           PT+ P L S V +++AG  HSLA+  +G  WAWG N++ QLG      R+T   P  V G
Sbjct: 630 PTQAPAL-SGVVALAAGDSHSLALRADGVAWAWGGNDQGQLGDATTLERST---PAAVPG 685

Query: 116 LDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIV 175
           L   +V A  A    S  +  DG+   WG +  GQLG   D T  + P  V+      + 
Sbjct: 686 L--AHVVALAAGNAHSLVLHADGTSSSWGNNAYGQLG---DGTSTLHPVPVQVPGPSAMK 740

Query: 176 KVSFGWGHALAQTEDGKLFGWGYSADGRIGN-----LGKALESSPLDSNIDRSSESDQEI 230
            V+ G  H+LA   DG ++ WG +  G +G+       + ++   L S +  S+ ++  +
Sbjct: 741 GVAAGGSHSLAVRSDGTVWAWGNNGSGELGDGTGLQRPRPVQVQGLGSAVAVSAGTNHSL 800

Query: 231 ---SSSTI----EKAQKLVSEGMEKEKYMPIIWEPFLVEGVE-VVDIACGFDHSLVLGRN 282
              S  T+      +Q  + +G    +Y+P+      V G+  V+ ++ G  HSL L  +
Sbjct: 801 AVQSDGTVWAWGGNSQGQLGDGTGITRYVPV-----RVSGLNGVMAVSAGSAHSLALRSD 855

Query: 283 GVLLSCGSNVYGQLGREKQDMGMFPVDIN--FHPVSISSGLGHSLAICEVRSSNVTGGAR 340
           G + + G N YGQLG       + P+ +      VSI++G  HSLA   VRS        
Sbjct: 856 GTVWAWGYNFYGQLGDATSTQRLVPIQVPGLTGVVSIAAGTHHSLA---VRSDGT----- 907

Query: 341 GIVSWGWNRSSQLG------RMGPDNVP 362
            + +WG+N   QLG      R  P  VP
Sbjct: 908 -VWAWGYNFYGQLGDGTKIQRSPPVQVP 934



 Score =  102 bits (253), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 100/306 (32%), Positives = 142/306 (46%), Gaps = 67/306 (21%)

Query: 69  VSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASG 128
           V+AG  HSL + ++G VWAWG N   QLG G   +  T   P RV+ LD V    A A G
Sbjct: 42  VAAGAAHSLMLRSDGTVWAWGDNTYGQLGDG---TGITQRLPVRVQSLDSV---VALAVG 95

Query: 129 VVSS-AIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQ 187
              S A+  DG++W WG +  GQLG G D  ++ VP +V +L G  +V ++ G  H+LA 
Sbjct: 96  YQHSLALRSDGTVWAWGDNFFGQLGDGSD-AQSQVPIQVWSLNG--VVAIAAGDHHSLAL 152

Query: 188 TEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGME 247
             DG ++ WGY+A G++G+      +SPL                               
Sbjct: 153 LSDGSVWAWGYNAHGQLGD--DTTVASPL------------------------------- 179

Query: 248 KEKYMPIIWEPFLVEGVE-VVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMF 306
                     P  V+G+  VV ++ G  HSL +  +G + + G N YGQLG         
Sbjct: 180 ----------PVQVQGLSGVVALSAGSTHSLAVLSDGKVKAWGDNYYGQLGDGSSTERWT 229

Query: 307 PVDINFHP--VSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPDN--VP 362
           PV ++      S+ +G  HSLA+C   +         + +WG N S QLG        VP
Sbjct: 230 PVLVSSLTGVKSVVAGTFHSLALCSDGT---------VRAWGENGSGQLGISSTTRRPVP 280

Query: 363 LVVEGL 368
           +VV GL
Sbjct: 281 VVVPGL 286



 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 99/295 (33%), Positives = 143/295 (48%), Gaps = 31/295 (10%)

Query: 29   VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAW 88
            V ++G  SQG LG  T +T      Y P RV GL + V +VSAG  HSLA+ ++G VWAW
Sbjct: 808  VWAWGGNSQGQLGDGTGIT-----RYVPVRVSGL-NGVMAVSAGSAHSLALRSDGTVWAW 861

Query: 89   GRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKR 148
            G N   QLG      R     P +V GL  V   AA      S A+  DG++W WG +  
Sbjct: 862  GYNFYGQLGDATSTQRLV---PIQVPGLTGVVSIAAGTH--HSLAVRSDGTVWAWGYNFY 916

Query: 149  GQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGN-- 206
            GQLG G  I  +  P +V  LAG  +V V+ G  H+LA   +G ++ WGY+  G++G+  
Sbjct: 917  GQLGDGTKIQRSP-PVQVPGLAG--MVSVAAGTYHSLAVHSNGTVWAWGYNNHGQLGDGT 973

Query: 207  LGKALESSPLDSN---IDRSS-------ESDQEISSSTIEKAQKLVSEGMEKEKYMPIIW 256
              + L   P+ S+   I  ++        +D  +       A +L  +G   ++ MP   
Sbjct: 974  TTQRLLPVPISSSSGVIAAAANWHSLVVRTDGTVWGWGSNNASQL-GDGSTSDRKMPT-- 1030

Query: 257  EPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDIN 311
             P  V    V  I+ G +HSL L  +G + + G    GQLG     M + P  ++
Sbjct: 1031 -PSSVPN-GVRSISSGANHSLALRSDGTVWAWGFGNSGQLGDGVMSMRLVPAGVS 1083



 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 97/331 (29%), Positives = 162/331 (48%), Gaps = 50/331 (15%)

Query: 56  PTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEG 115
           P  VPGL ++V +++AG  HSLA+ ++G V AWG N+  Q+G G +  + T   P +V G
Sbjct: 280 PVVVPGL-TNVQALAAGSAHSLALRSDGTVRAWGNNDHGQVGNGTISQQLT---PVQVPG 335

Query: 116 LDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIV 175
           + ++   A  A G  S A+  DG  W WG   +GQLG G+  ++ + P+RV    G++I 
Sbjct: 336 VGRMKSIA--AGGAHSLAMRADGITWAWGDDSQGQLGDGQS-SQQLRPARV---LGQRI- 388

Query: 176 KVSFGWG--HALAQTEDGKLFGWGYSADGRIGNLGKALESSPLD--------SNIDRSSE 225
           ++  G G  H+LA   DG ++ WG +  G++G+      + P+         +    +S 
Sbjct: 389 RMPLGTGNRHSLALHADGTVWAWGVNTAGQLGDGTDLPRTLPVQVPGLAGVHTLSATTSH 448

Query: 226 SDQEISSSTI----EKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVD-IACGFDHSLVLG 280
           S    +  T+    + A   + +G   ++ +P+      V G+  VD ++    HSL + 
Sbjct: 449 SLAARADGTVWAWGDNAFGQLGDGTTTQRLLPV-----QVPGLAGVDTVSSMHQHSLAVS 503

Query: 281 RNGVLLSCGSNVYGQLGREKQDMGMFPVDIN--FHPVSISSGLGHSLAICEVRSSNVTGG 338
           R+G + + G N  G+LG       + PV +      V++++G  HSLA+           
Sbjct: 504 RDGTVWAWGFNGSGRLGDGTTLSRLTPVQVPGLSSMVAVAAGSTHSLALR---------- 553

Query: 339 ARGIV-SWGWNRSSQLG------RMGPDNVP 362
           A G V +WG N +  LG      R+ P  VP
Sbjct: 554 ADGTVWAWGDNSNGALGDGTTLRRLSPVQVP 584



 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 115/384 (29%), Positives = 168/384 (43%), Gaps = 48/384 (12%)

Query: 15  LTSRIFMRSASGTAVVSFGDGSQGALGLPTSLT------------GVGGDAYE--PTRVP 60
           +T R+ +R  S  +VV+   G Q +L L +  T            G G DA    P +V 
Sbjct: 75  ITQRLPVRVQSLDSVVALAVGYQHSLALRSDGTVWAWGDNFFGQLGDGSDAQSQVPIQVW 134

Query: 61  GLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVN 120
            L + V +++AG +HSLA+ ++G+VWAWG N   QLG     +      P +V+GL    
Sbjct: 135 SL-NGVVAIAAGDHHSLALLSDGSVWAWGYNAHGQLGDDTTVASPL---PVQVQGLS--G 188

Query: 121 VCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEK-IVKVSF 179
           V A  A    S A+  DG +  WG +  GQLG G   TE   P  V +L G K +V  +F
Sbjct: 189 VVALSAGSTHSLAVLSDGKVKAWGDNYYGQLGDGSS-TERWTPVLVSSLTGVKSVVAGTF 247

Query: 180 GWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLD----SNID---RSSESDQEISS 232
              H+LA   DG +  WG +  G++G         P+     +N+      S     + S
Sbjct: 248 ---HSLALCSDGTVRAWGENGSGQLGISSTTRRPVPVVVPGLTNVQALAAGSAHSLALRS 304

Query: 233 STIEKAQKLVSEGMEKEKYMPIIWEPFLVEGV-EVVDIACGFDHSLVLGRNGVLLSCGSN 291
               +A      G      +     P  V GV  +  IA G  HSL +  +G+  + G +
Sbjct: 305 DGTVRAWGNNDHGQVGNGTISQQLTPVQVPGVGRMKSIAAGGAHSLAMRADGITWAWGDD 364

Query: 292 VYGQLGREKQDMGMFPVDINFHPVSISSGLG--HSLAICEVRSSNVTGGARGIV-SWGWN 348
             GQLG  +    + P  +    + +  G G  HSLA+           A G V +WG N
Sbjct: 365 SQGQLGDGQSSQQLRPARVLGQRIRMPLGTGNRHSLALH----------ADGTVWAWGVN 414

Query: 349 RSSQLGRMG--PDNVPLVVEGLEG 370
            + QLG     P  +P+ V GL G
Sbjct: 415 TAGQLGDGTDLPRTLPVQVPGLAG 438



 Score = 51.2 bits (121), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 63/233 (27%), Positives = 101/233 (43%), Gaps = 34/233 (14%)

Query: 158 TEAIVPSRVEALAGEKIV---KVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESS 214
           TE   PSR+EA      +   +V+ G  H+L    DG ++ WG +  G++G+     +  
Sbjct: 20  TEDAGPSRIEAALTPPPLGHEQVAAGAAHSLMLRSDGTVWAWGDNTYGQLGDGTGITQRL 79

Query: 215 P-----LDSNIDRSSESDQEI---SSSTI----EKAQKLVSEGMEKEKYMPI-IWEPFLV 261
           P     LDS +  +      +   S  T+    +     + +G + +  +PI +W    +
Sbjct: 80  PVRVQSLDSVVALAVGYQHSLALRSDGTVWAWGDNFFGQLGDGSDAQSQVPIQVWS---L 136

Query: 262 EGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFHP--VSISS 319
            G  VV IA G  HSL L  +G + + G N +GQLG +       PV +      V++S+
Sbjct: 137 NG--VVAIAAGDHHSLALLSDGSVWAWGYNAHGQLGDDTTVASPLPVQVQGLSGVVALSA 194

Query: 320 GLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPDN--VPLVVEGLEG 370
           G  HSLA+              + +WG N   QLG         P++V  L G
Sbjct: 195 GSTHSLAVLSDGK---------VKAWGDNYYGQLGDGSSTERWTPVLVSSLTG 238


>gi|324502986|gb|ADY41305.1| E3 ubiquitin-protein ligase HERC4 [Ascaris suum]
          Length = 1038

 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 103/346 (29%), Positives = 161/346 (46%), Gaps = 38/346 (10%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYE-PTRVPGLPSD-----VTSVSAGHYHSLAVTNN 82
           + +FG G  G LG    L G  G+  + P  V G P+      V +++ G  H+L + ++
Sbjct: 27  LYAFGYGGDGQLGNRGFLNGDDGNIVKTPQVVVGAPTSHDGVSVRAIATGERHTLFLADD 86

Query: 83  GAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWV 142
           G VW+ G N   +LGRG  +  +    P  + G   VN+    A    + A+ DDG L+ 
Sbjct: 87  GKVWSCGSNENGELGRGGCQEGSFTIYPVLLSG--GVNIVQIAAGRAHNMAVADDGRLFA 144

Query: 143 WGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADG 202
           WG +  GQL L  +IT   +P RV +L   + V+V+ G  H +A  E G++F WG   DG
Sbjct: 145 WGSNSHGQLALPSNITSTDIPKRVVSLT--ETVQVACGTDHTIAIVESGRIFVWGLQPDG 202

Query: 203 RIGNLGKALESSPLDSNIDRSSESDQEISSS---------TIEKAQKLVSEGMEKEKYMP 253
           R+    K +E       +  ++ SD  ++ +         + E  Q   S+   KE+  P
Sbjct: 203 RVLYAPKEIEFFMALPVVQVNAGSDYYVALTVSGAMFVWGSNEYGQLGTSDN--KERTTP 260

Query: 254 IIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQ---DMGMFPVD- 309
              E   +  + VV +ACG  H++ L   G L  CGS+  GQLG  ++      M  V  
Sbjct: 261 A--EVTTLHSLNVVHVACGHSHTVALTHEGRLFVCGSDSCGQLGSGRKVPSQNTMLAVTE 318

Query: 310 -INFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLG 354
            +  H   ++ G  H+LA+         GG   + ++G N S QLG
Sbjct: 319 MLGTHVTRVACGRCHTLAL--------AGGK--MYAFGLNSSGQLG 354


>gi|226495691|ref|NP_001141854.1| uncharacterized protein LOC100273996 [Zea mays]
 gi|194706180|gb|ACF87174.1| unknown [Zea mays]
          Length = 391

 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 67/166 (40%), Positives = 98/166 (59%), Gaps = 4/166 (2%)

Query: 56  PTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEG 115
           P RV GL   V  ++ G +H+LA+T +G +WAWG N   QLG G  + R   + P RVEG
Sbjct: 193 PVRVQGL-EKVRVIAVGAFHNLALTEDGILWAWGNNEYGQLGTGDTQPR---SHPIRVEG 248

Query: 116 LDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIV 175
           L  +++    A G  S+A+   G ++ WG+ + G+LG G D +  +VP +VE LAGE IV
Sbjct: 249 LSDLSLVDIAAGGWHSTALTIQGEVYAWGRGEHGRLGFGDDKSSRMVPLKVELLAGEDIV 308

Query: 176 KVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNID 221
           +VS G  H++A T DG++F +G    GR+G   K     P+  +ID
Sbjct: 309 QVSCGGTHSVALTRDGRMFSYGRGDHGRLGYGRKLTTGQPMGVDID 354



 Score = 89.0 bits (219), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 95/307 (30%), Positives = 134/307 (43%), Gaps = 29/307 (9%)

Query: 84  AVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVW 143
           AV AWG   + QLG G  E +   +    VE L    V A  A    S AI +DG L+ W
Sbjct: 9   AVLAWGSGEDGQLGMGGNEEK---DWAHCVEALGSYAVTAVVAGSRNSLAICEDGRLFTW 65

Query: 144 GKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGR 203
           G ++RG LG          P  V ALAG KIV+ + G  H LA  ++G  + WG +  G+
Sbjct: 66  GWNQRGTLGHPPKTKTESSPGPVHALAGLKIVQAAIGGWHCLAVDDNGHAYAWGGNEYGQ 125

Query: 204 IGNLGKALE--SSPLDSNIDRSSESDQEISSSTIEKAQK----LVSEGMEKEKYMPI--- 254
            G   +  E  +  L  +I        ++    +         L  EG       P    
Sbjct: 126 CGEEPERKEDGTRALRRDIPTPQRCAPKLKVRQVAAGGTHSVVLTQEGHVWTWGQPWPPG 185

Query: 255 ----IWEPFLVEGVEVVD-IACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVD 309
               I  P  V+G+E V  IA G  H+L L  +G+L + G+N YGQLG         P+ 
Sbjct: 186 DIKQISTPVRVQGLEKVRVIAVGAFHNLALTEDGILWAWGNNEYGQLGTGDTQPRSHPIR 245

Query: 310 I----NFHPVSISSGLGHSLAICEVRSSNVTG-GARGIVSWGWNRSSQLGRMGPDNVPLV 364
           +    +   V I++G  HS A+         G G  G + +G ++SS++       VPL 
Sbjct: 246 VEGLSDLSLVDIAAGGWHSTALTIQGEVYAWGRGEHGRLGFGDDKSSRM-------VPLK 298

Query: 365 VEGLEGE 371
           VE L GE
Sbjct: 299 VELLAGE 305



 Score = 80.1 bits (196), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 79/279 (28%), Positives = 122/279 (43%), Gaps = 37/279 (13%)

Query: 66  VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLG----RGALESRATWND-PKRVEGLDQVN 120
           +   + G +H LAV +NG  +AWG N   Q G    R    +RA   D P       ++ 
Sbjct: 96  IVQAAIGGWHCLAVDDNGHAYAWGGNEYGQCGEEPERKEDGTRALRRDIPTPQRCAPKLK 155

Query: 121 VCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFG 180
           V    A G  S  +  +G +W W     GQ     DI +   P RV+ L  EK+  ++ G
Sbjct: 156 VRQVAAGGTHSVVLTQEGHVWTW-----GQPWPPGDIKQISTPVRVQGL--EKVRVIAVG 208

Query: 181 WGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPL------DSNIDRSSESDQEISSST 234
             H LA TEDG L+ WG +  G++G       S P+      D ++   +      ++ T
Sbjct: 209 AFHNLALTEDGILWAWGNNEYGQLGTGDTQPRSHPIRVEGLSDLSLVDIAAGGWHSTALT 268

Query: 235 IEKAQKLVSEGM---------EKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVL 285
           I+        G          +  + +P+  E  L+ G ++V ++CG  HS+ L R+G +
Sbjct: 269 IQGEVYAWGRGEHGRLGFGDDKSSRMVPLKVE--LLAGEDIVQVSCGGTHSVALTRDGRM 326

Query: 286 LSCGSNVYGQLGREK-----QDMGMFPVDINFHPVSISS 319
            S G   +G+LG  +     Q MG   VDI+  P    S
Sbjct: 327 FSYGRGDHGRLGYGRKLTTGQPMG---VDIDLPPPKTRS 362


>gi|440904419|gb|ELR54939.1| Putative E3 ubiquitin-protein ligase HERC6, partial [Bos grunniens
           mutus]
          Length = 1019

 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 86/273 (31%), Positives = 129/273 (47%), Gaps = 45/273 (16%)

Query: 28  AVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPS-DVTSVSAGHYHSLAVTNNGAVW 86
            V S GD S+G LG   +  G      +P R+P L +  V  VS G  HSLAV + G V+
Sbjct: 43  TVQSCGDNSRGQLGRKGTPRG-----EQPERIPALETLHVALVSCGKEHSLAVCHKGRVF 97

Query: 87  AWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKS 146
           AWG  +E QLG G  E + T   PK+++ L  + +         S A+ +DG ++ WG +
Sbjct: 98  AWGAASEGQLGIG--EFKETTFIPKKIKTLAGIKIIQVACGHYHSVALSEDGQVFSWGTN 155

Query: 147 KRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGN 206
             GQLGLGK+      P RV +L G  + +V+ G  H+ A +  G  FGWG +  G++  
Sbjct: 156 SHGQLGLGKEFPSQASPQRVRSLEGIPLAQVAAGGHHSFALSLSGTSFGWGSNNAGQLAL 215

Query: 207 LGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEV 266
            G    ++P+                                ++Y P+        G  V
Sbjct: 216 SGN---NAPV--------------------------------QRYKPVSIGALKTLG--V 238

Query: 267 VDIACGFDHSLVLGRNGVLLSCGSNVYGQLGRE 299
           V I+CG+ H+ VL ++G + + G N YGQLG +
Sbjct: 239 VSISCGYKHTAVLTQDGKVFTFGDNSYGQLGHD 271



 Score = 82.8 bits (203), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 60/195 (30%), Positives = 100/195 (51%), Gaps = 19/195 (9%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPS-----DVTSVSAGHYHSLAVTNNG 83
           V ++G  S+G LG+        G+  E T +P          +  V+ GHYHS+A++ +G
Sbjct: 96  VFAWGAASEGQLGI--------GEFKETTFIPKKIKTLAGIKIIQVACGHYHSVALSEDG 147

Query: 84  AVWAWGRNNEVQLGRGA-LESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWV 142
            V++WG N+  QLG G    S+A+   P+RV  L+ + +    A G  S A+   G+ + 
Sbjct: 148 QVFSWGTNSHGQLGLGKEFPSQAS---PQRVRSLEGIPLAQVAAGGHHSFALSLSGTSFG 204

Query: 143 WGKSKRGQLGLGKD--ITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSA 200
           WG +  GQL L  +    +   P  + AL    +V +S G+ H    T+DGK+F +G ++
Sbjct: 205 WGSNNAGQLALSGNNAPVQRYKPVSIGALKTLGVVSISCGYKHTAVLTQDGKVFTFGDNS 264

Query: 201 DGRIGNLGKALESSP 215
            G++G+   A +  P
Sbjct: 265 YGQLGHDPTAEKRGP 279



 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 61/236 (25%), Positives = 103/236 (43%), Gaps = 63/236 (26%)

Query: 137 DGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGW 196
           DG++   G + RGQLG  K       P R+ AL    +  VS G  H+LA    G++F W
Sbjct: 41  DGTVQSCGDNSRGQLG-RKGTPRGEQPERIPALETLHVALVSCGKEHSLAVCHKGRVFAW 99

Query: 197 GYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIW 256
           G +++G++G +G+  E++ +   I                                    
Sbjct: 100 GAASEGQLG-IGEFKETTFIPKKIKT---------------------------------- 124

Query: 257 EPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFHPV- 315
               + G++++ +ACG  HS+ L  +G + S G+N +GQLG  K+    FP   +   V 
Sbjct: 125 ----LAGIKIIQVACGHYHSVALSEDGQVFSWGTNSHGQLGLGKE----FPSQASPQRVR 176

Query: 316 --------SISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPDNVPL 363
                    +++G  HS A+      +++G + G   WG N + QL   G +N P+
Sbjct: 177 SLEGIPLAQVAAGGHHSFAL------SLSGTSFG---WGSNNAGQLALSG-NNAPV 222



 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 55/208 (26%), Positives = 87/208 (41%), Gaps = 14/208 (6%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRV---PGLPSDVTSVSAGHYHSLAVTNNGAV 85
           V S+G  S G LGL             P RV    G+P  +  V+AG +HS A++ +G  
Sbjct: 149 VFSWGTNSHGQLGLGKEFPSQAS----PQRVRSLEGIP--LAQVAAGGHHSFALSLSGTS 202

Query: 86  WAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGK 145
           + WG NN  QL      +      P  +  L  + V +       ++ +  DG ++ +G 
Sbjct: 203 FGWGSNNAGQLALSGNNAPVQRYKPVSIGALKTLGVVSISCGYKHTAVLTQDGKVFTFGD 262

Query: 146 SKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQT-EDGKL--FGWGYSADG 202
           +  GQLG      E   P  VE + G  + ++  G  H LA     G++  FG G     
Sbjct: 263 NSYGQLG-HDPTAEKRGPQLVERIEG-LVSQIDCGSDHTLAYIYTTGQVVSFGRGPGCAS 320

Query: 203 RIGNLGKALESSPLDSNIDRSSESDQEI 230
           R  + G   ESS +   +     +D ++
Sbjct: 321 RSPHPGALAESSDISCLVSAKDLADVQV 348



 Score = 45.1 bits (105), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 34/97 (35%), Positives = 45/97 (46%), Gaps = 15/97 (15%)

Query: 263 GVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDI----NFHPVSIS 318
           G  ++  A G  HSL+L  +G + SCG N  GQLGR+    G  P  I      H   +S
Sbjct: 22  GNTLLQAASGEHHSLLLLSDGTVQSCGDNSRGQLGRKGTPRGEQPERIPALETLHVALVS 81

Query: 319 SGLGHSLAICEVRSSNVTGGARG-IVSWGWNRSSQLG 354
            G  HSLA+C           +G + +WG     QLG
Sbjct: 82  CGKEHSLAVCH----------KGRVFAWGAASEGQLG 108


>gi|159038541|ref|YP_001537794.1| regulator of chromosome condensation, RCC1 [Salinispora arenicola
           CNS-205]
 gi|157917376|gb|ABV98803.1| regulator of chromosome condensation, RCC1 [Salinispora arenicola
           CNS-205]
          Length = 561

 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 95/314 (30%), Positives = 144/314 (45%), Gaps = 35/314 (11%)

Query: 62  LPSD--VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQV 119
           LP+D  +T+V+AG  HSLAVT+ G V AWG N+  QLG G    R+T   P  V+     
Sbjct: 89  LPADTTITAVAAGQGHSLAVTSAGTVLAWGANSSGQLGDGTTTPRST---PVAVDLPAGT 145

Query: 120 NVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSF 179
            V A  A    S A+   G++  WG +  GQL  G   T +  P  V+  AG  +  V+ 
Sbjct: 146 TVTAVAAGDRHSLAVTSTGTVLAWGLNVTGQLYDGTTTTNSSTPIVVDLPAGTTVTAVAA 205

Query: 180 GWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDR-----------SSESDQ 228
           G  H+LA T  G +  WG ++ G++G+      S+P+  ++             SS S  
Sbjct: 206 GNAHSLALTSAGTVLAWGANSSGQLGDGTTTPRSTPVAVDLPAGTTISTIAASSSSHSLA 265

Query: 229 EISSSTI----EKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGV 284
             S+ T+          + +G    +  P+  +  L  G  V  +A G  HSL +   G 
Sbjct: 266 VTSTGTMLAWGANFTGQLGDGTITNRSTPVAVD--LPAGTTVTAVATGSGHSLAVTSTGT 323

Query: 285 LLSCGSNVYGQLGREKQDMGMFPVDINFHP----VSISSGLGHSLAICEVRSSNVTGGAR 340
           +L+ G N  GQLG         PV ++        +++ G GHSLA+    +        
Sbjct: 324 MLAWGGNGSGQLGDGSTTSSSTPVAVDLPAGTTVTAVAGGAGHSLALTSTGT-------- 375

Query: 341 GIVSWGWNRSSQLG 354
            +++WG+N S QLG
Sbjct: 376 -MLAWGFNTSGQLG 388



 Score = 81.3 bits (199), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 52/147 (35%), Positives = 80/147 (54%), Gaps = 6/147 (4%)

Query: 75  HSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSS-A 133
           HSLAVT+ G + AWG N   QLG G + +R+T   P  V+ L       A A+G   S A
Sbjct: 262 HSLAVTSTGTMLAWGANFTGQLGDGTITNRST---PVAVD-LPAGTTVTAVATGSGHSLA 317

Query: 134 IGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKL 193
           +   G++  WG +  GQLG G   T +  P  V+  AG  +  V+ G GH+LA T  G +
Sbjct: 318 VTSTGTMLAWGGNGSGQLGDGS-TTSSSTPVAVDLPAGTTVTAVAGGAGHSLALTSTGTM 376

Query: 194 FGWGYSADGRIGNLGKALESSPLDSNI 220
             WG++  G++G+   +  S+P+ +++
Sbjct: 377 LAWGFNTSGQLGDGTTSNRSTPIATDL 403



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 77/284 (27%), Positives = 114/284 (40%), Gaps = 45/284 (15%)

Query: 104 RATWNDPKRVEGLDQVNVCAA-------------FASGVVSSAIGDDGSLWVWGKSKRGQ 150
           R +W  P  V GL  V +  A              A GV S+A G  G+   WG +   Q
Sbjct: 13  RGSWVRPASVRGLFAVPLMVAIVLGVTSVGAAPVLAQGVPSAAAGPPGTGLAWGDNAESQ 72

Query: 151 LGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKA 210
           LG G   T    P  V+  A   I  V+ G GH+LA T  G +  WG ++ G++G+    
Sbjct: 73  LGDGT-TTNRSTPVTVDLPADTTITAVAAGQGHSLAVTSAGTVLAWGANSSGQLGDGTTT 131

Query: 211 LESSPLDSNI------------DRSS---ESDQEISSSTIEKAQKLVSEGMEKEKYMPII 255
             S+P+  ++            DR S    S   + +  +    +L           PI+
Sbjct: 132 PRSTPVAVDLPAGTTVTAVAAGDRHSLAVTSTGTVLAWGLNVTGQLYDGTTTTNSSTPIV 191

Query: 256 WEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFHP- 314
            +  L  G  V  +A G  HSL L   G +L+ G+N  GQLG         PV ++    
Sbjct: 192 VD--LPAGTTVTAVAAGNAHSLALTSAGTVLAWGANSSGQLGDGTTTPRSTPVAVDLPAG 249

Query: 315 ----VSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLG 354
                  +S   HSLA+    +         +++WG N + QLG
Sbjct: 250 TTISTIAASSSSHSLAVTSTGT---------MLAWGANFTGQLG 284



 Score = 78.2 bits (191), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 76/297 (25%), Positives = 120/297 (40%), Gaps = 53/297 (17%)

Query: 87  AWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKS 146
           AWG N E QLG G   +R+T   P  V+      + A  A    S A+   G++  WG +
Sbjct: 64  AWGDNAESQLGDGTTTNRST---PVTVDLPADTTITAVAAGQGHSLAVTSAGTVLAWGAN 120

Query: 147 KRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGN 206
             GQLG G   T    P  V+  AG  +  V+ G  H+LA T  G +  WG +  G++ +
Sbjct: 121 SSGQLGDGT-TTPRSTPVAVDLPAGTTVTAVAAGDRHSLAVTSTGTVLAWGLNVTGQLYD 179

Query: 207 LGKALESS-------PLDSNIDRSSESDQE----ISSSTI----EKAQKLVSEGMEKEKY 251
                 SS       P  + +   +  +       S+ T+      +   + +G    + 
Sbjct: 180 GTTTTNSSTPIVVDLPAGTTVTAVAAGNAHSLALTSAGTVLAWGANSSGQLGDGTTTPRS 239

Query: 252 MPIIWEPFLVEGVEVVDIACG----------FDHSLVLGRNGVLLSCGSNVYGQLGREKQ 301
            P+            VD+  G            HSL +   G +L+ G+N  GQLG    
Sbjct: 240 TPV-----------AVDLPAGTTISTIAASSSSHSLAVTSTGTMLAWGANFTGQLGDGTI 288

Query: 302 DMGMFPVDINFHP----VSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLG 354
                PV ++        ++++G GHSLA+    +         +++WG N S QLG
Sbjct: 289 TNRSTPVAVDLPAGTTVTAVATGSGHSLAVTSTGT---------MLAWGGNGSGQLG 336


>gi|159039901|ref|YP_001539154.1| regulator of chromosome condensation, RCC1 [Salinispora arenicola
           CNS-205]
 gi|157918736|gb|ABW00164.1| regulator of chromosome condensation, RCC1 [Salinispora arenicola
           CNS-205]
          Length = 556

 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 110/349 (31%), Positives = 162/349 (46%), Gaps = 46/349 (13%)

Query: 31  SFGDGSQGALGLPTSL-TGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWG 89
           ++GD S G LG  T+  +    D Y P       + +T+V+AG  HSLA+T+ GAV AWG
Sbjct: 60  AWGDNSDGQLGNGTTTGSSTPVDVYLPAG-----TTITAVTAGGLHSLALTSTGAVLAWG 114

Query: 90  RNNEVQLGRGALESRATWNDPKRVEGLDQVNVCA-AFASGVVSSAIGDDGSLWVWGKSKR 148
           RN   QLG G   +R+T  D     G     + A AF S  ++SA    G++  WG++  
Sbjct: 115 RNFSGQLGNGDTTNRSTPVDVDLPAGTTITAIAAGAFHSLALTSA----GTVLAWGENLH 170

Query: 149 GQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLG 208
           GQLG G   T    P  V   AG  I  V+ G  H+LA T  G +  WG +++G++GN  
Sbjct: 171 GQLGNGG-TTNMSTPVGVSLPAGVTITAVAAGAFHSLAVTSTGAVLAWGDNSNGQLGNGT 229

Query: 209 KALESSPLDSNIDR-SSESDQEISSSTIEKAQKLVSEGM----------------EKEKY 251
               S+P+D ++   ++ +      +    +  L S G                    + 
Sbjct: 230 TTGSSTPVDVDLPAGTTITAVAAGVAGAAHSLALTSTGAALAWGNNADGQLGNGDTTNRS 289

Query: 252 MPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDIN 311
            P+  +  L  GV +  +A G  HSL L   G +++ G NV GQLG         PVD++
Sbjct: 290 TPVDVD--LPAGVTITAVAAGGLHSLALTAAGAVVAWGRNVSGQLGNGTTTGSSTPVDVD 347

Query: 312 FHPV-----SISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGR 355
             P      +I++G    LA+        T GA  +V+WG N S QLG 
Sbjct: 348 L-PTGATINAIAAGFDFGLAL-------TTAGA--VVAWGRNVSGQLGN 386



 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 88/294 (29%), Positives = 137/294 (46%), Gaps = 27/294 (9%)

Query: 64  SDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCA 123
           + +T+++AG +HSLA+T+ G V AWG N   QLG G   + +T   P  V     V + A
Sbjct: 141 TTITAIAAGAFHSLALTSAGTVLAWGENLHGQLGNGGTTNMST---PVGVSLPAGVTITA 197

Query: 124 AFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWG- 182
             A    S A+   G++  WG +  GQLG G   T +  P  V+  AG  I  V+ G   
Sbjct: 198 VAAGAFHSLAVTSTGAVLAWGDNSNGQLGNGT-TTGSSTPVDVDLPAGTTITAVAAGVAG 256

Query: 183 --HALAQTEDGKLFGWGYSADGRIGNLGKALESSPLD----SNIDRSSESDQEISSSTIE 236
             H+LA T  G    WG +ADG++GN      S+P+D    + +  ++ +   + S  + 
Sbjct: 257 AAHSLALTSTGAALAWGNNADGQLGNGDTTNRSTPVDVDLPAGVTITAVAAGGLHSLALT 316

Query: 237 KAQKLVS----------EGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLL 286
            A  +V+           G       P+  +  L  G  +  IA GFD  L L   G ++
Sbjct: 317 AAGAVVAWGRNVSGQLGNGTTTGSSTPVDVD--LPTGATINAIAAGFDFGLALTTAGAVV 374

Query: 287 SCGSNVYGQLGREKQDMGMFPVDINFHP----VSISSGLGHSLAICEVRSSNVT 336
           + G NV GQLG         PVD++        ++++G  HS+A+  + +S  T
Sbjct: 375 AWGRNVSGQLGNGDTINRSTPVDVDLPAGVTITAVAAGGQHSMALVALPTSTTT 428



 Score = 85.5 bits (210), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 83/301 (27%), Positives = 128/301 (42%), Gaps = 36/301 (11%)

Query: 76  SLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIG 135
           S A+  +   +AWG N++ QLG G     +T   P  V       + A  A G+ S A+ 
Sbjct: 49  SAAIRASDTYFAWGDNSDGQLGNGTTTGSST---PVDVYLPAGTTITAVTAGGLHSLALT 105

Query: 136 DDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFG 195
             G++  WG++  GQLG G D T    P  V+  AG  I  ++ G  H+LA T  G +  
Sbjct: 106 STGAVLAWGRNFSGQLGNG-DTTNRSTPVDVDLPAGTTITAIAAGAFHSLALTSAGTVLA 164

Query: 196 WGYSADGRIGNLGKALESSP----LDSNIDRSSESDQEISSSTIEKAQKLVS-------- 243
           WG +  G++GN G    S+P    L + +  ++ +     S  +     +++        
Sbjct: 165 WGENLHGQLGNGGTTNMSTPVGVSLPAGVTITAVAAGAFHSLAVTSTGAVLAWGDNSNGQ 224

Query: 244 --EGMEKEKYMPIIWEPFLVEGVEVV---DIACGFDHSLVLGRNGVLLSCGSNVYGQLGR 298
              G       P+  +  L  G  +        G  HSL L   G  L+ G+N  GQLG 
Sbjct: 225 LGNGTTTGSSTPVDVD--LPAGTTITAVAAGVAGAAHSLALTSTGAALAWGNNADGQLGN 282

Query: 299 EKQDMGMFPVDINFHP----VSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLG 354
                   PVD++        ++++G  HSLA+           A  +V+WG N S QLG
Sbjct: 283 GDTTNRSTPVDVDLPAGVTITAVAAGGLHSLALTA---------AGAVVAWGRNVSGQLG 333

Query: 355 R 355
            
Sbjct: 334 N 334



 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 44/172 (25%), Positives = 65/172 (37%), Gaps = 53/172 (30%)

Query: 194 FGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMP 253
           F WG ++DG++GN      S+P+D                                 Y+P
Sbjct: 59  FAWGDNSDGQLGNGTTTGSSTPVD--------------------------------VYLP 86

Query: 254 IIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFH 313
                    G  +  +  G  HSL L   G +L+ G N  GQLG         PVD++  
Sbjct: 87  --------AGTTITAVTAGGLHSLALTSTGAVLAWGRNFSGQLGNGDTTNRSTPVDVDLP 138

Query: 314 P----VSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPDNV 361
                 +I++G  HSLA+           A  +++WG N   QLG  G  N+
Sbjct: 139 AGTTITAIAAGAFHSLALTS---------AGTVLAWGENLHGQLGNGGTTNM 181


>gi|219847608|ref|YP_002462041.1| chromosome condensation regulator RCC1 [Chloroflexus aggregans DSM
           9485]
 gi|219541867|gb|ACL23605.1| regulator of chromosome condensation RCC1 [Chloroflexus aggregans
           DSM 9485]
          Length = 778

 Score =  115 bits (289), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 100/329 (30%), Positives = 143/329 (43%), Gaps = 30/329 (9%)

Query: 55  EPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVE 114
            P  V GLPS V +++AG YH+ A+ ++G VW WGRNN  QLG G   +R+T   P  V 
Sbjct: 351 TPAAVSGLPSGVETIAAGDYHTCALMSSGGVWCWGRNNSGQLGDGTTTARST---PAAVS 407

Query: 115 GLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKI 174
           GL    V A  A G+ + A+   G +W WG +  GQLG G D T++  P  V  LA    
Sbjct: 408 GLPS-GVTAIAAGGLHTCALMSSGGVWCWGLNNSGQLGDGSD-TDSSTPVAVSGLASGVE 465

Query: 175 VKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSP-----LDSNIDRSSESDQE 229
              + GW H  A T  G ++ WG +  G++G+       +P     L S +   +  D  
Sbjct: 466 TIAAGGW-HTCALTSSGGVWCWGRNNSGQLGDGSTIYHITPVAVSGLPSGVTAIAAGDYH 524

Query: 230 ISSSTIEKA--------QKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGR 281
             + T               + +G   ++  P+     L  GV V  IA G  H+  L  
Sbjct: 525 TCALTGSGGVWCWGYNLSGQLGDGTTTDRSTPVA-VSGLTSGVTV--IAAGRFHTCALTS 581

Query: 282 NGVLLSCGSNVYGQLGREKQDMGMFPVDINFHPVSISSGLGHSLAICEVRSSNVTGGARG 341
           +G +   G+N  GQLG         PV ++  P  +++        C + SS        
Sbjct: 582 SGGVWCWGANFDGQLGDGTTTNRTTPVAVSGLPSGVTAIAAGGWHTCALTSSGE------ 635

Query: 342 IVSWGWNRSSQLGRMGPDN--VPLVVEGL 368
           +  WG N   QLG     N   P  V GL
Sbjct: 636 VWCWGDNYYGQLGDGTTTNRSTPGAVSGL 664



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 95/330 (28%), Positives = 145/330 (43%), Gaps = 42/330 (12%)

Query: 52  DAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPK 111
           D+  P  V GL S V +++AG +H+ A+T++G VW WGRNN  QLG G+     T   P 
Sbjct: 450 DSSTPVAVSGLASGVETIAAGGWHTCALTSSGGVWCWGRNNSGQLGDGSTIYHIT---PV 506

Query: 112 RVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAG 171
            V GL    V A  A    + A+   G +W WG +  GQLG G   T+   P  V  L  
Sbjct: 507 AVSGLPS-GVTAIAAGDYHTCALTGSGGVWCWGYNLSGQLGDGT-TTDRSTPVAVSGLT- 563

Query: 172 EKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSP-----LDSNIDRSSES 226
             +  ++ G  H  A T  G ++ WG + DG++G+      ++P     L S +   +  
Sbjct: 564 SGVTVIAAGRFHTCALTSSGGVWCWGANFDGQLGDGTTTNRTTPVAVSGLPSGVTAIAAG 623

Query: 227 DQEISSSTI--------EKAQKLVSEGMEKEKYMPIIWEPFLVEGVE--VVDIACGFDHS 276
                + T         +     + +G    +       P  V G+   V  IA G++H+
Sbjct: 624 GWHTCALTSSGEVWCWGDNYYGQLGDGTTTNRS-----TPGAVSGLPSGVTAIAAGWEHT 678

Query: 277 LVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFHP---VSISSGLGHSLAICEVRSS 333
             L  +G +   G N YGQLG         P  ++  P    +I++G+ H+ A+      
Sbjct: 679 CALTSSGEVWCWGDNYYGQLGDGTTTNRSTPGAVSGLPSGVTAIAAGVYHTCALT----- 733

Query: 334 NVTGGARGIVSWGWNRSSQLGRMGPDNVPL 363
               G+ G++ WG N   QLG    D  PL
Sbjct: 734 ----GSGGVMCWGNNGDGQLG----DGRPL 755



 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 101/337 (29%), Positives = 148/337 (43%), Gaps = 28/337 (8%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAW 88
           V+ +GD   G LG  T+      +   P  V GLPS VT+++AG  H+ A+T +G VW W
Sbjct: 176 VMCWGDNYYGQLGDGTTT-----NRRTPVAVSGLPSGVTAIAAGGLHTCALTGSGEVWCW 230

Query: 89  GRNNEVQLGRGALE-SRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSK 147
           G N   QLG G    SR+T   P  V GL    + A  A G+ + A+   G +W WG++ 
Sbjct: 231 GYNYYGQLGDGTTTYSRST---PAAVGGLPS-GMTAIAAGGLHTCALMSSGGVWCWGRND 286

Query: 148 RGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNL 207
            GQLG G D T++  P  V  L    +  ++ G  H  A T  G+++ WG +  G++G+ 
Sbjct: 287 SGQLGDGSD-TDSSTPVAVSGLP-SGVTAIAAGDYHTCALTGSGEVWCWGGNGFGQLGDG 344

Query: 208 GKALESSP-----LDSNIDRSSESDQE---ISSSTIEKAQKLVSEGMEKEKYMPIIWEPF 259
                S+P     L S ++  +  D     + SS         + G   +        P 
Sbjct: 345 TTTARSTPAAVSGLPSGVETIAAGDYHTCALMSSGGVWCWGRNNSGQLGDGTTTARSTPA 404

Query: 260 LVEGVE--VVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFHPVSI 317
            V G+   V  IA G  H+  L  +G +   G N  GQLG         PV ++     +
Sbjct: 405 AVSGLPSGVTAIAAGGLHTCALMSSGGVWCWGLNNSGQLGDGSDTDSSTPVAVSGLASGV 464

Query: 318 SSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLG 354
            +        C + SS       G+  WG N S QLG
Sbjct: 465 ETIAAGGWHTCALTSSG------GVWCWGRNNSGQLG 495



 Score = 99.4 bits (246), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 96/331 (29%), Positives = 138/331 (41%), Gaps = 77/331 (23%)

Query: 52  DAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPK 111
           D+  P  V GLPS VT+++AG YH+ A+T +G VW WG N   QLG G   +R+T   P 
Sbjct: 297 DSSTPVAVSGLPSGVTAIAAGDYHTCALTGSGEVWCWGGNGFGQLGDGTTTARST---PA 353

Query: 112 RVEGLDQVNVCAAFASGVVSSAIGD--------DGSLWVWGKSKRGQLGLGKDITEAIVP 163
            V GL          SGV + A GD         G +W WG++  GQLG G   T    P
Sbjct: 354 AVSGLP---------SGVETIAAGDYHTCALMSSGGVWCWGRNNSGQLGDGT-TTARSTP 403

Query: 164 SRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRS 223
           + V  L    +  ++ G  H  A    G ++ WG +  G++G                  
Sbjct: 404 AAVSGLP-SGVTAIAAGGLHTCALMSSGGVWCWGLNNSGQLG------------------ 444

Query: 224 SESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNG 283
                               +G + +   P+     L  GVE   IA G  H+  L  +G
Sbjct: 445 --------------------DGSDTDSSTPVA-VSGLASGVET--IAAGGWHTCALTSSG 481

Query: 284 VLLSCGSNVYGQLGREKQDMGMFPVDINFHP---VSISSGLGHSLAICEVRSSNVTGGAR 340
            +   G N  GQLG       + PV ++  P    +I++G  H+ A+          G+ 
Sbjct: 482 GVWCWGRNNSGQLGDGSTIYHITPVAVSGLPSGVTAIAAGDYHTCALT---------GSG 532

Query: 341 GIVSWGWNRSSQL--GRMGPDNVPLVVEGLE 369
           G+  WG+N S QL  G     + P+ V GL 
Sbjct: 533 GVWCWGYNLSGQLGDGTTTDRSTPVAVSGLT 563



 Score = 95.1 bits (235), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 94/333 (28%), Positives = 138/333 (41%), Gaps = 37/333 (11%)

Query: 55  EPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVE 114
            P  V GLPS VT+++AG+YH+ A+T +G V  WG N   QLG G    R+T   P  V 
Sbjct: 95  TPGAVSGLPSGVTAIAAGNYHTCALTGSGGVRCWGANYSGQLGNGLTFGRST---PGAVS 151

Query: 115 GLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKI 174
           GL    V A  A G  + A+   G +  WG +  GQLG G   T    P  V  L    +
Sbjct: 152 GLPS-GVTAIAAGGDHTCALMSSGGVMCWGDNYYGQLGDGT-TTNRRTPVAVSGLP-SGV 208

Query: 175 VKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSST 234
             ++ G  H  A T  G+++ WGY+  G++G+ G    S    + +         I++  
Sbjct: 209 TAIAAGGLHTCALTGSGEVWCWGYNYYGQLGD-GTTTYSRSTPAAVGGLPSGMTAIAAGG 267

Query: 235 IEKAQKLVS---------------EGMEKEKYMPIIWEPFLVEGVE--VVDIACGFDHSL 277
           +     + S               +G + +   P+      V G+   V  IA G  H+ 
Sbjct: 268 LHTCALMSSGGVWCWGRNDSGQLGDGSDTDSSTPVA-----VSGLPSGVTAIAAGDYHTC 322

Query: 278 VLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFHPVSISSGLGHSLAICEVRSSNVTG 337
            L  +G +   G N +GQLG         P  ++  P  + +        C + SS    
Sbjct: 323 ALTGSGEVWCWGGNGFGQLGDGTTTARSTPAAVSGLPSGVETIAAGDYHTCALMSSG--- 379

Query: 338 GARGIVSWGWNRSSQL--GRMGPDNVPLVVEGL 368
              G+  WG N S QL  G     + P  V GL
Sbjct: 380 ---GVWCWGRNNSGQLGDGTTTARSTPAAVSGL 409



 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 80/261 (30%), Positives = 110/261 (42%), Gaps = 51/261 (19%)

Query: 52  DAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPK 111
           D   P  V GL S VT ++AG +H+ A+T++G VW WG N + QLG G   +R T   P 
Sbjct: 552 DRSTPVAVSGLTSGVTVIAAGRFHTCALTSSGGVWCWGANFDGQLGDGTTTNRTT---PV 608

Query: 112 RVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAG 171
            V GL    V A  A G  + A+   G +W WG +  GQLG G   T    P  V  L  
Sbjct: 609 AVSGLPS-GVTAIAAGGWHTCALTSSGEVWCWGDNYYGQLGDGT-TTNRSTPGAVSGLP- 665

Query: 172 EKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEIS 231
             +  ++ GW H  A T  G+++ WG   D   G LG         +  +RS+       
Sbjct: 666 SGVTAIAAGWEHTCALTSSGEVWCWG---DNYYGQLGDG-------TTTNRST------- 708

Query: 232 SSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVE--VVDIACGFDHSLVLGRNGVLLSCG 289
                                     P  V G+   V  IA G  H+  L  +G ++  G
Sbjct: 709 --------------------------PGAVSGLPSGVTAIAAGVYHTCALTGSGGVMCWG 742

Query: 290 SNVYGQLGREKQDMGMFPVDI 310
           +N  GQLG  +      PVD+
Sbjct: 743 NNGDGQLGDGRPLYRTTPVDV 763



 Score = 67.8 bits (164), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 85/309 (27%), Positives = 118/309 (38%), Gaps = 62/309 (20%)

Query: 66  VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAF 125
           VT+++AG  H+ A+T +G V  WG N+  QLG G   +R+T   P  V GL    V A  
Sbjct: 55  VTAIAAGGAHTCALTGSGGVMCWGGNDFGQLGDGTPTTRST---PGAVSGLPS-GVTAIA 110

Query: 126 ASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHAL 185
           A    + A+   G +  WG +  GQLG G     +  P  V  L    +  ++ G  H  
Sbjct: 111 AGNYHTCALTGSGGVRCWGANYSGQLGNGLTFGRS-TPGAVSGLP-SGVTAIAAGGDHTC 168

Query: 186 AQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEG 245
           A    G +  WG   D   G LG                                   +G
Sbjct: 169 ALMSSGGVMCWG---DNYYGQLG-----------------------------------DG 190

Query: 246 MEKEKYMPIIWEPFLVEGVE--VVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDM 303
               +  P+      V G+   V  IA G  H+  L  +G +   G N YGQLG      
Sbjct: 191 TTTNRRTPVA-----VSGLPSGVTAIAAGGLHTCALTGSGEVWCWGYNYYGQLGDGTTTY 245

Query: 304 GM-FPVDINFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPD--- 359
               P  +   P  +++     L  C + SS       G+  WG N S QLG  G D   
Sbjct: 246 SRSTPAAVGGLPSGMTAIAAGGLHTCALMSSG------GVWCWGRNDSGQLGD-GSDTDS 298

Query: 360 NVPLVVEGL 368
           + P+ V GL
Sbjct: 299 STPVAVSGL 307



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 32/78 (41%), Positives = 42/78 (53%), Gaps = 5/78 (6%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAW 88
           V  +GD   G LG  T+      +   P  V GLPS VT+++AG YH+ A+T +G V  W
Sbjct: 687 VWCWGDNYYGQLGDGTTT-----NRSTPGAVSGLPSGVTAIAAGVYHTCALTGSGGVMCW 741

Query: 89  GRNNEVQLGRGALESRAT 106
           G N + QLG G    R T
Sbjct: 742 GNNGDGQLGDGRPLYRTT 759


>gi|7489243|pir||T07027 hypothetical protein (orf in Lhca3.St.1 promoter) - potato
          Length = 137

 Score =  115 bits (289), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 53/75 (70%), Positives = 63/75 (84%)

Query: 23  SASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNN 82
           S S T V+SFGDGS GALGLP+S+ G+G DAYEPT +PGLP D+ +V+AGH+HSLAVT+ 
Sbjct: 38  SHSKTTVMSFGDGSHGALGLPSSIIGMGSDAYEPTPIPGLPPDIVTVAAGHFHSLAVTSE 97

Query: 83  GAVWAWGRNNEVQLG 97
           G VWAWGRNNE QLG
Sbjct: 98  GHVWAWGRNNEGQLG 112


>gi|7547431|gb|AAB28865.2| unknown [Solanum tuberosum]
          Length = 124

 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 53/75 (70%), Positives = 63/75 (84%)

Query: 23 SASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNN 82
          S S T V+SFGDGS GALGLP+S+ G+G DAYEPT +PGLP D+ +V+AGH+HSLAVT+ 
Sbjct: 25 SHSKTTVMSFGDGSHGALGLPSSIIGMGSDAYEPTPIPGLPPDIVTVAAGHFHSLAVTSE 84

Query: 83 GAVWAWGRNNEVQLG 97
          G VWAWGRNNE QLG
Sbjct: 85 GHVWAWGRNNEGQLG 99


>gi|383456202|ref|YP_005370191.1| RCC1 repeat-containing protein [Corallococcus coralloides DSM 2259]
 gi|380729703|gb|AFE05705.1| RCC1 repeat-containing protein [Corallococcus coralloides DSM 2259]
          Length = 806

 Score =  115 bits (287), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 102/318 (32%), Positives = 148/318 (46%), Gaps = 66/318 (20%)

Query: 56  PTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEG 115
           P  +PGL + VT++++G YHSLA+  +G VWAWG NN  QLG G   SR    +   V G
Sbjct: 536 PAPLPGL-TGVTALASGTYHSLALKQDGTVWAWGLNNLGQLGDGTTVSR---TEQMPVPG 591

Query: 116 LDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIV 175
           L  V   A  AS   S A+  DG++W WG +  GQLG G   +  + P++V  L G  + 
Sbjct: 592 LTDVTALA--ASTYHSLALKQDGTVWTWGYNSSGQLGDGTTASR-LTPAQVPGLTG--VS 646

Query: 176 KVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTI 235
            ++ G  H+LA  +DG ++ WG + DG++GN G A+ S                      
Sbjct: 647 AIAAGLVHSLALKQDGTVWAWGRNTDGQLGN-GAAVNS---------------------- 683

Query: 236 EKAQKLVSEGMEKEKYMPIIWEPFLVEGVE-VVDIACGFDHSLVLGRNGVLLSCGSNVYG 294
                            P+   P  V+G+  V  IA G  HSL L ++G   S G N  G
Sbjct: 684 -----------------PV---PVQVQGLTGVSAIAAGSYHSLALKQDGTAWSWGRNGTG 723

Query: 295 QLGREKQDMGMFPVDIN--FHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQ 352
           QLG E     + PV +       +++ G  HS+A+  +R   V        +WG+N   +
Sbjct: 724 QLGNETITGSLTPVQVQGLTAVTALAGGDAHSMAL--LRDGTV-------WTWGYNAEGE 774

Query: 353 L--GRMGPDNVPLVVEGL 368
           L  G       P+ V+GL
Sbjct: 775 LGDGTTLDRTAPVRVQGL 792



 Score =  104 bits (259), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 82/245 (33%), Positives = 120/245 (48%), Gaps = 55/245 (22%)

Query: 55  EPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVE 114
           E   VPGL +DVT+++A  YHSLA+  +G VW WG N+  QLG G   SR T   P +V 
Sbjct: 585 EQMPVPGL-TDVTALAASTYHSLALKQDGTVWTWGYNSSGQLGDGTTASRLT---PAQVP 640

Query: 115 GLDQVNVCAAFASGVVSS-AIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEK 173
           GL  V+   A A+G+V S A+  DG++W WG++  GQLG G  +  + VP +V+ L G  
Sbjct: 641 GLTGVS---AIAAGLVHSLALKQDGTVWAWGRNTDGQLGNGAAV-NSPVPVQVQGLTG-- 694

Query: 174 IVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSS 233
           +  ++ G  H+LA  +DG  + WG +  G++GN                     + I+ S
Sbjct: 695 VSAIAAGSYHSLALKQDGTAWSWGRNGTGQLGN---------------------ETITGS 733

Query: 234 TIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFD-HSLVLGRNGVLLSCGSNV 292
                                   P  V+G+  V    G D HS+ L R+G + + G N 
Sbjct: 734 LT----------------------PVQVQGLTAVTALAGGDAHSMALLRDGTVWTWGYNA 771

Query: 293 YGQLG 297
            G+LG
Sbjct: 772 EGELG 776



 Score = 98.2 bits (243), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 66/178 (37%), Positives = 102/178 (57%), Gaps = 14/178 (7%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAW 88
           V ++G  S G LG      G       P +VPGL + V++++AG  HSLA+  +G VWAW
Sbjct: 614 VWTWGYNSSGQLG-----DGTTASRLTPAQVPGL-TGVSAIAAGLVHSLALKQDGTVWAW 667

Query: 89  GRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKR 148
           GRN + QLG GA  +      P +V+GL  V+  AA +    S A+  DG+ W WG++  
Sbjct: 668 GRNTDGQLGNGAAVNSPV---PVQVQGLTGVSAIAAGS--YHSLALKQDGTAWSWGRNGT 722

Query: 149 GQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGN 206
           GQLG  + IT ++ P +V+ L    +  ++ G  H++A   DG ++ WGY+A+G +G+
Sbjct: 723 GQLG-NETITGSLTPVQVQGL--TAVTALAGGDAHSMALLRDGTVWTWGYNAEGELGD 777



 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 96/340 (28%), Positives = 149/340 (43%), Gaps = 68/340 (20%)

Query: 39  ALGLPTSLTGV--GGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQL 96
           ALGL  S + +  GG    P+     P  VT ++AG  HSL V  +G   AWG N   QL
Sbjct: 419 ALGLSASASMILEGGTPCAPS-----PRRVTWIAAGGAHSLVVRQDGTADAWGHNGYGQL 473

Query: 97  GRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKD 156
           G G    R     P +V+GL      +A A   +  A+  DG++W WG +  GQLG   D
Sbjct: 474 GDGTSVDRFL-PGPVQVQGLTGATALSATAYHTL--ALAQDGTVWGWGYNDSGQLGDTVD 530

Query: 157 ITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPL 216
           +   + P+ +  L G  +  ++ G  H+LA  +DG ++ WG +  G++G+          
Sbjct: 531 MVR-VTPAPLPGLTG--VTALASGTYHSLALKQDGTVWAWGLNNLGQLGD---------- 577

Query: 217 DSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHS 276
                           +T+ + +++   G+                  +V  +A    HS
Sbjct: 578 ---------------GTTVSRTEQMPVPGL-----------------TDVTALAASTYHS 605

Query: 277 LVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDI-NFHPVS-ISSGLGHSLAICEVRSSN 334
           L L ++G + + G N  GQLG       + P  +     VS I++GL HSLA+ +  +  
Sbjct: 606 LALKQDGTVWTWGYNSSGQLGDGTTASRLTPAQVPGLTGVSAIAAGLVHSLALKQDGT-- 663

Query: 335 VTGGARGIVSWGWNRSSQLGRMGPDN--VPLVVEGLEGES 372
                  + +WG N   QLG     N  VP+ V+GL G S
Sbjct: 664 -------VWAWGRNTDGQLGNGAAVNSPVPVQVQGLTGVS 696



 Score = 68.9 bits (167), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 46/118 (38%), Positives = 66/118 (55%), Gaps = 9/118 (7%)

Query: 56  PTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEG 115
           P +V GL + V++++AG YHSLA+  +G  W+WGRN   QLG   +    T   P +V+G
Sbjct: 686 PVQVQGL-TGVSAIAAGSYHSLALKQDGTAWSWGRNGTGQLGNETITGSLT---PVQVQG 741

Query: 116 LDQVNVCAAFASGVVSS-AIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGE 172
           L  V    A A G   S A+  DG++W WG +  G+LG G  + +   P RV+ L  E
Sbjct: 742 LTAVT---ALAGGDAHSMALLRDGTVWTWGYNAEGELGDGTTL-DRTAPVRVQGLVLE 795


>gi|356573964|ref|XP_003555124.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC1-like [Glycine
           max]
          Length = 395

 Score =  114 bits (286), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 70/191 (36%), Positives = 107/191 (56%), Gaps = 5/191 (2%)

Query: 56  PTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEG 115
           P RV GL  +V  ++ G +H+LA+  +G +WAWG N   QLG G  + R+    P RV+G
Sbjct: 194 PVRVQGL-ENVRLIAVGAFHNLALQEDGTLWAWGNNEYGQLGTGDTQPRS---QPIRVQG 249

Query: 116 LDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGK-DITEAIVPSRVEALAGEKI 174
           L  + +    A G  S+A+ D+G ++ WG+ + G+LG G  D +  +VP +V+ LAGE I
Sbjct: 250 LSDLTLVDIAAGGWHSTALTDEGEVYGWGRGEHGRLGFGDSDKSSKMVPQKVQLLAGEDI 309

Query: 175 VKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSST 234
           V+VS G  H++A T DG +F +G    GR+G   K     P++  ID     D   +++ 
Sbjct: 310 VQVSCGGTHSVALTRDGHMFSFGRGDHGRLGYGRKVTTGQPMEVPIDLPPPQDPSGTATE 369

Query: 235 IEKAQKLVSEG 245
                KLV+ G
Sbjct: 370 GHWIAKLVACG 380



 Score = 72.8 bits (177), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 88/303 (29%), Positives = 134/303 (44%), Gaps = 30/303 (9%)

Query: 87  AWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKS 146
           AWG   + QLG G+ E +  W     V+ L    + +  A    S AI DDG L+ WG +
Sbjct: 9   AWGSGEDGQLGIGSNEEKE-WV--CLVKALQPHRIRSVVAGSRNSLAIADDGKLFTWGWN 65

Query: 147 KRGQLG-----LGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSAD 201
           +R  LG       ++ TE   PS+V+AL+  KIV+ + G  H LA  + G+ + WG +  
Sbjct: 66  QRATLGHPAETKSENKTEN-TPSQVKALSSVKIVQAAIGGWHCLAVDDQGRAYAWGGNEY 124

Query: 202 GRIGNLGKALESS--PLDSNIDRSSESDQEISSSTIEKAQK----LVSEGMEKEKYMPI- 254
           G+ G   +  + +  PL  +I+       ++    +         L  EG       P  
Sbjct: 125 GQCGEEPERKDGTGRPLRRDIEIPQRCAPKLVVRQVAAGGTHSVVLTREGHVWTWGQPWP 184

Query: 255 ------IWEPFLVEGVEVVD-IACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFP 307
                 I  P  V+G+E V  IA G  H+L L  +G L + G+N YGQLG         P
Sbjct: 185 PGDIKQISVPVRVQGLENVRLIAVGAFHNLALQEDGTLWAWGNNEYGQLGTGDTQPRSQP 244

Query: 308 VDI----NFHPVSISSGLGHSLAICEVRSSNVTGGARGIV-SWGWNRSSQLGRMGPDNVP 362
           + +    +   V I++G  HS A+ +     V G  RG     G+  S +  +M P  V 
Sbjct: 245 IRVQGLSDLTLVDIAAGGWHSTALTD--EGEVYGWGRGEHGRLGFGDSDKSSKMVPQKVQ 302

Query: 363 LVV 365
           L+ 
Sbjct: 303 LLA 305



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 95/399 (23%), Positives = 158/399 (39%), Gaps = 98/399 (24%)

Query: 25  SGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGL-PSDVTSVSAGHYHSLAVTNNG 83
           S + ++++G G  G LG+     G   +      V  L P  + SV AG  +SLA+ ++G
Sbjct: 3   SHSHIIAWGSGEDGQLGI-----GSNEEKEWVCLVKALQPHRIRSVVAGSRNSLAIADDG 57

Query: 84  AVWAWGRNNEVQLGRGALESRA---TWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSL 140
            ++ WG N    LG  A E+++   T N P +V+ L  V +  A   G    A+ D G  
Sbjct: 58  KLFTWGWNQRATLGHPA-ETKSENKTENTPSQVKALSSVKIVQAAIGGWHCLAVDDQGRA 116

Query: 141 WVWGKSKRGQLG------------LGKDI------------------------------- 157
           + WG ++ GQ G            L +DI                               
Sbjct: 117 YAWGGNEYGQCGEEPERKDGTGRPLRRDIEIPQRCAPKLVVRQVAAGGTHSVVLTREGHV 176

Query: 158 ------------TEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIG 205
                        +  VP RV+ L  E +  ++ G  H LA  EDG L+ WG +  G++G
Sbjct: 177 WTWGQPWPPGDIKQISVPVRVQGL--ENVRLIAVGAFHNLALQEDGTLWAWGNNEYGQLG 234

Query: 206 NLGKALESSPLD----SNIDRSSESDQEISSSTIEKAQKLVSEGM---------EKEKYM 252
                  S P+     S++     +     S+ +    ++   G          + +K  
Sbjct: 235 TGDTQPRSQPIRVQGLSDLTLVDIAAGGWHSTALTDEGEVYGWGRGEHGRLGFGDSDKSS 294

Query: 253 PIIWEPF-LVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFP--VD 309
            ++ +   L+ G ++V ++CG  HS+ L R+G + S G   +G+LG  ++     P  V 
Sbjct: 295 KMVPQKVQLLAGEDIVQVSCGGTHSVALTRDGHMFSFGRGDHGRLGYGRKVTTGQPMEVP 354

Query: 310 INFHPVSISSGLG---------------HSLAICEVRSS 333
           I+  P    SG                 H+LAI E +S+
Sbjct: 355 IDLPPPQDPSGTATEGHWIAKLVACGGRHTLAIVEWKSN 393


>gi|327273047|ref|XP_003221294.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC6-like [Anolis
           carolinensis]
          Length = 1081

 Score =  114 bits (286), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 87/276 (31%), Positives = 130/276 (47%), Gaps = 52/276 (18%)

Query: 29  VVSFGDGSQGALG--LPTSLTGVGGDAYEPTRVPGLPSD-VTSVSAGHYHSLAVTNNGAV 85
           V S GD S+G LG  LP+   G    +Y P  +  L +  V  VS G  HSLAV N G V
Sbjct: 58  VASCGDNSRGQLGRRLPS---GQEKRSYGPELIQALETQKVVHVSCGKEHSLAVCNKGRV 114

Query: 86  WAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGK 145
           ++WG     QLG G L  R     PK +  L +  V         S A+ +DG ++ WG+
Sbjct: 115 YSWGAGTFGQLGTGELGDRLI---PKTINALSKYKVIQVACGHDHSIALTNDGRIFSWGQ 171

Query: 146 SKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIG 205
           +  GQLGLGKDI+    P +V AL G  + +V+ G  H+ A +  G ++GWG +   ++G
Sbjct: 172 NIHGQLGLGKDISSQASPQQVSALDGIPLAQVAAGGAHSFALSLSGVVYGWGRNNAHQLG 231

Query: 206 NLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVE 265
                                               +S+   KE+    I++P+ +  + 
Sbjct: 232 ------------------------------------LSQAKPKEQ----IFKPYSIAALR 251

Query: 266 VVDIA---CGFDHSLVLGRNGVLLSCGSNVYGQLGR 298
            +D+A   CG +H+ VL +NG + + G +  GQLGR
Sbjct: 252 SLDVAFVSCGAEHTAVLTQNGSVYTFGDDSAGQLGR 287



 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 68/227 (29%), Positives = 96/227 (42%), Gaps = 53/227 (23%)

Query: 140 LWVWGKSKRGQLGLGK-DITEAIVPSRV--EALAGEKIVKVSFGWGHALAQTEDGKLFGW 196
           L+ WG+   GQLGLGK +     VP R    A A + +V V+ G  H L   +DG   G 
Sbjct: 2   LYCWGEGSAGQLGLGKGEGVSGPVPFRPGPRAPADQAVVLVACGERHTLLLRDDG---GV 58

Query: 197 GYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIW 256
               D   G LG+ L S                               G EK  Y P + 
Sbjct: 59  ASCGDNSRGQLGRRLPS-------------------------------GQEKRSYGPELI 87

Query: 257 EPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDIN----F 312
           +   +E  +VV ++CG +HSL +   G + S G+  +GQLG  +    + P  IN    +
Sbjct: 88  Q--ALETQKVVHVSCGKEHSLAVCNKGRVYSWGAGTFGQLGTGELGDRLIPKTINALSKY 145

Query: 313 HPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPD 359
             + ++ G  HS+A+        T   R I SWG N   QLG +G D
Sbjct: 146 KVIQVACGHDHSIAL--------TNDGR-IFSWGQNIHGQLG-LGKD 182



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 78/284 (27%), Positives = 111/284 (39%), Gaps = 68/284 (23%)

Query: 85  VWAWGRNNEVQLGRGALE--SRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWV 142
           ++ WG  +  QLG G  E  S      P      DQ  V  A      +  + DDG +  
Sbjct: 2   LYCWGEGSAGQLGLGKGEGVSGPVPFRPGPRAPADQAVVLVACGERH-TLLLRDDGGVAS 60

Query: 143 WGKSKRGQLGL----GKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGY 198
            G + RGQLG     G++   +  P  ++AL  +K+V VS G  H+LA    G+++ WG 
Sbjct: 61  CGDNSRGQLGRRLPSGQE-KRSYGPELIQALETQKVVHVSCGKEHSLAVCNKGRVYSWG- 118

Query: 199 SADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEP 258
              G  G LG                    E+    I K    +S      KY       
Sbjct: 119 --AGTFGQLGTG------------------ELGDRLIPKTINALS------KY------- 145

Query: 259 FLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFHPVSIS 318
                 +V+ +ACG DHS+ L  +G + S G N++GQLG  K       +     P  +S
Sbjct: 146 ------KVIQVACGHDHSIALTNDGRIFSWGQNIHGQLGLGKD------ISSQASPQQVS 193

Query: 319 SGLGHSLAICEVRSSNVTGGARG--------IVSWGWNRSSQLG 354
           +  G  LA          GGA          +  WG N + QLG
Sbjct: 194 ALDGIPLA------QVAAGGAHSFALSLSGVVYGWGRNNAHQLG 231



 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 51/192 (26%), Positives = 88/192 (45%), Gaps = 17/192 (8%)

Query: 9   HNHVNVLTS--RIFMRSASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDV 66
           H+H   LT+  RIF          S+G    G LGL   ++       + + + G+P  +
Sbjct: 154 HDHSIALTNDGRIF----------SWGQNIHGQLGLGKDISS-QASPQQVSALDGIP--L 200

Query: 67  TSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFA 126
             V+AG  HS A++ +G V+ WGRNN  QLG    + +     P  +  L  ++V     
Sbjct: 201 AQVAAGGAHSFALSLSGVVYGWGRNNAHQLGLSQAKPKEQIFKPYSIAALRSLDVAFVSC 260

Query: 127 SGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALA 186
               ++ +  +GS++ +G    GQLG     +    P +VE + G  +  ++ G  H L 
Sbjct: 261 GAEHTAVLTQNGSVYTFGDDSAGQLGRNSSSSPKFGPQKVEWIDG-PVSLLACGSYHTLV 319

Query: 187 Q-TEDGKLFGWG 197
           + +  G+L  +G
Sbjct: 320 RISTSGQLLSFG 331



 Score = 44.7 bits (104), Expect = 0.083,   Method: Compositional matrix adjust.
 Identities = 39/114 (34%), Positives = 53/114 (46%), Gaps = 21/114 (18%)

Query: 266 VVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGR------EKQDMG--MFPVDINFHPVSI 317
           VV +ACG  H+L+L  +G + SCG N  GQLGR      EK+  G  +         V +
Sbjct: 39  VVLVACGERHTLLLRDDGGVASCGDNSRGQLGRRLPSGQEKRSYGPELIQALETQKVVHV 98

Query: 318 SSGLGHSLAICEVRSSNVTGGARG-IVSWGWNRSSQL--GRMGPDNVPLVVEGL 368
           S G  HSLA+C           +G + SWG     QL  G +G   +P  +  L
Sbjct: 99  SCGKEHSLAVCN----------KGRVYSWGAGTFGQLGTGELGDRLIPKTINAL 142


>gi|147782117|emb|CAN67581.1| hypothetical protein VITISV_010346 [Vitis vinifera]
          Length = 423

 Score =  114 bits (285), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 100/366 (27%), Positives = 162/366 (44%), Gaps = 65/366 (17%)

Query: 17  SRIFMRSASGTAVVSFGDGSQGALGLPTSLTGV---GGDAYEPTRVPGLPS-DVTSVSAG 72
           S  ++ +  G  VVS   G+        S T V   G D + P  +  L    +  ++ G
Sbjct: 58  SPTYLSALDGHEVVSVTCGADHTTAYSESFTQVYSWGCDLFTPQPIKALHGLRIKQIACG 117

Query: 73  HYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSS 132
             H LAVT +G V +WGRN   QLG G  E       P++++    V+V    A    ++
Sbjct: 118 DSHCLAVTMDGEVQSWGRNQNGQLGLGTTEDSLV---PQKIQAFQGVSVKMVAAGAEHTA 174

Query: 133 AIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGK 192
           A+ +DG L+ WG  + G LGLG D  + +VP +V  + G K+VKV+ GW H ++ +  G 
Sbjct: 175 AVTEDGELYGWGWGRYGNLGLG-DRNDRLVPEKVSTVEGVKMVKVACGWRHTISVSSSGG 233

Query: 193 LFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQK-LVSEGMEKEKY 251
           L+ +G+S  G++G+                  + +  ++   +E  Q+ L+SE       
Sbjct: 234 LYTYGWSKYGQLGH-----------------GDFEDHLTPHKLEALQENLISE------- 269

Query: 252 MPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDIN 311
                            I+ G+ H++ L  +G L   G N +GQ+G         PV + 
Sbjct: 270 -----------------ISGGWRHTMALTSDGKLYGWGWNKFGQVGVGDNVDHCSPVQVK 312

Query: 312 F----HPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGP--DNVPLVV 365
           F      V IS G  H+LA+ E ++         + SWG   + QLG       N+P ++
Sbjct: 313 FPHEQKVVHISCGWRHTLAVTERQN---------VFSWGRGTNGQLGHGESIDRNIPKMI 363

Query: 366 EGLEGE 371
           E L  +
Sbjct: 364 EVLSAD 369



 Score = 95.5 bits (236), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 92/336 (27%), Positives = 142/336 (42%), Gaps = 102/336 (30%)

Query: 66  VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNV---- 121
           V  +SAG  HS+A+     V +WGR  + QLG G  E R +      ++G + V+V    
Sbjct: 18  VLLISAGASHSVALLXGNVVCSWGRGEDGQLGHGDAEDRLSPTYLSALDGHEVVSVTCGA 77

Query: 122 -----------------CAAFASGVVSS---------AIGD--------DGSLWVWGKSK 147
                            C  F    + +         A GD        DG +  WG+++
Sbjct: 78  DHTTAYSESFTQVYSWGCDLFTPQPIKALHGLRIKQIACGDSHCLAVTMDGEVQSWGRNQ 137

Query: 148 RGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNL 207
            GQLGLG    +++VP +++A  G  +  V+ G  H  A TEDG+L+GWG+   GR GNL
Sbjct: 138 NGQLGLGT-TEDSLVPQKIQAFQGVSVKMVAAGAEHTAAVTEDGELYGWGW---GRYGNL 193

Query: 208 GKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVV 267
           G                           ++  +LV E +              VEGV++V
Sbjct: 194 GLG-------------------------DRNDRLVPEKVST------------VEGVKMV 216

Query: 268 DIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFHPVSISSGLGHSLAI 327
            +ACG+ H++ +  +G L + G + YGQLG      G F   +  H +          A+
Sbjct: 217 KVACGWRHTISVSSSGGLYTYGWSKYGQLGH-----GDFEDHLTPHKLE---------AL 262

Query: 328 CEVRSSNVTGGARGIVS---------WGWNRSSQLG 354
            E   S ++GG R  ++         WGWN+  Q+G
Sbjct: 263 QENLISEISGGWRHTMALTSDGKLYGWGWNKFGQVG 298



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 54/203 (26%), Positives = 87/203 (42%), Gaps = 23/203 (11%)

Query: 173 KIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSP-----LDSNIDRSSESD 227
           +++ +S G  H++A      +  WG   DG++G+       SP     LD +   S    
Sbjct: 17  RVLLISAGASHSVALLXGNVVCSWGRGEDGQLGHGDAEDRLSPTYLSALDGHEVVSVTCG 76

Query: 228 QEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLS 287
            + +++  E   ++ S G +     PI      + G+ +  IACG  H L +  +G + S
Sbjct: 77  ADHTTAYSESFTQVYSWGCDLFTPQPIK----ALHGLRIKQIACGDSHCLAVTMDGEVQS 132

Query: 288 CGSNVYGQLGREKQDMGMFPVDIN-FHPVS---ISSGLGHSLAICEVRSSNVTGGARGIV 343
            G N  GQLG    +  + P  I  F  VS   +++G  H+ A+ E            + 
Sbjct: 133 WGRNQNGQLGLGTTEDSLVPQKIQAFQGVSVKMVAAGAEHTAAVTEDGE---------LY 183

Query: 344 SWGWNRSSQLGRMGPDNVPLVVE 366
            WGW R   LG +G  N  LV E
Sbjct: 184 GWGWGRYGNLG-LGDRNDRLVPE 205


>gi|444915470|ref|ZP_21235602.1| BNR repeat domain protein [Cystobacter fuscus DSM 2262]
 gi|444713401|gb|ELW54301.1| BNR repeat domain protein [Cystobacter fuscus DSM 2262]
          Length = 852

 Score =  114 bits (285), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 106/338 (31%), Positives = 159/338 (47%), Gaps = 53/338 (15%)

Query: 32  FGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRN 91
            GDGS GA  +P+S+                  DV +V+AG+ +SLAV NNG++WAWG N
Sbjct: 537 LGDGSTGAHPVPSSIL----------------DDVKAVAAGNDYSLAVRNNGSLWAWGSN 580

Query: 92  NEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQL 151
           +  QLG G+  +R T   P  V GL+  NV  A AS  VS A+  DG++W WG +  GQL
Sbjct: 581 SIGQLGDGSTTNRLT---PVPVNGLE--NVVGAAASFSVSLALRSDGTVWAWGLNSVGQL 635

Query: 152 GLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKAL 211
           G G  I  +  P  V  L    IV V+   GH+LA   DG ++ WG + DG++G+     
Sbjct: 636 GDGSTINRS-TPGPVGGLV--HIVGVATSGGHSLALRNDGTVWAWGGNHDGQLGDGTTTN 692

Query: 212 ESSPLD------------SNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPF 259
           +  P+             + +  +   D     +  +     + +G   ++  P+     
Sbjct: 693 QPKPVQVSGLSGVKAVAAAIVSSAVVRDNGTVWAWGDNYSGQLGDGTTTDRLTPV----- 747

Query: 260 LVEGVE-VVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDIN-FHPVS- 316
           LV G+  V  +A G  H L L  +G + + G N Y QLG   +     PV +     V  
Sbjct: 748 LVSGLSGVKALASGNHHFLALRNDGTVWAWGDNYYSQLGDGTRTQRSTPVQVRGLSDVKL 807

Query: 317 ISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLG 354
           I++G  HS+A+ +  +         + +WG N S QLG
Sbjct: 808 IAAGENHSMAVRKDGT---------VWTWGLNTSGQLG 836



 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 115/379 (30%), Positives = 172/379 (45%), Gaps = 38/379 (10%)

Query: 15  LTSRIFMRSASGTAVVSFGDGSQGALGLPTSLT---GVGGDAYEPTRVPGLPSDVTSVSA 71
           L+S   + +  G ++   GDG+  A G+ +S     G   D   P RV GL S+V  VSA
Sbjct: 239 LSSIKRVAAGDGYSLAVHGDGTVWAWGINSSGQLGDGTTTDRLTPGRVKGL-SEVVEVSA 297

Query: 72  GHY------HSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAF 125
             Y      H LAV  +G VWAWG N   QLG G    R T      ++G+  + V  +F
Sbjct: 298 AKYSLLGSAHVLAVRGDGTVWAWGNNGSGQLGDGTTTDRLTPVQVSELDGVKAIAVGNSF 357

Query: 126 ----ASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGW 181
               ++G  S A+  DG++W WG +  GQLG G  I+ +  P++V AL+G  I  VS   
Sbjct: 358 PLSNSNGSYSLAVRGDGTVWAWGSNSTGQLGDGTTISRS-RPAQVNALSG--ITAVSASS 414

Query: 182 GHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLD----SNIDRSSESDQEISSSTIEK 237
            HALA  +DG ++ WG + +G++G+   A    P+     S + RS  + +  S S  E 
Sbjct: 415 DHALAMRDDGTVWSWGKNTNGKLGDETTAHRLIPVQVHGLSGV-RSVAAGESHSVSVRED 473

Query: 238 AQKLV----SEGMEKEKYMPIIWEPFLVEGVE-VVDIACGFDHSLVLGRNGVLLSCGSNV 292
            +         G+  +  M + + P    G+     IA   + SL +  +  L   GS+ 
Sbjct: 474 GKAWAWGYRGMGLLGDGAMFLSFVPVQTMGLTATAQIASHGNRSLAVKEDNTLWVWGSSS 533

Query: 293 YGQLGREKQDMGMFPVDINFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQ 352
            G LG         P  I     ++++G  +SLA+    S         + +WG N   Q
Sbjct: 534 LGDLGDGSTGAHPVPSSILDDVKAVAAGNDYSLAVRNNGS---------LWAWGSNSIGQ 584

Query: 353 LGRMGPDN--VPLVVEGLE 369
           LG     N   P+ V GLE
Sbjct: 585 LGDGSTTNRLTPVPVNGLE 603



 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 90/299 (30%), Positives = 140/299 (46%), Gaps = 34/299 (11%)

Query: 56  PTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEG 115
           P +V GL S + +V+A   HSLAV ++G VWAWG N+  QLG G    R T   P +V G
Sbjct: 183 PVQVGGL-SGIRAVAASSDHSLAVRDDGTVWAWGINSSGQLGDGTTNDRLT---PVQVAG 238

Query: 116 LDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIV 175
           L  +   AA      S A+  DG++W WG +  GQLG G   T+ + P RV+ L+  ++V
Sbjct: 239 LSSIKRVAAGDG--YSLAVHGDGTVWAWGINSSGQLGDGT-TTDRLTPGRVKGLS--EVV 293

Query: 176 KVS------FGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLD-SNIDRSSE--- 225
           +VS       G  H LA   DG ++ WG +  G++G+       +P+  S +D       
Sbjct: 294 EVSAAKYSLLGSAHVLAVRGDGTVWAWGNNGSGQLGDGTTTDRLTPVQVSELDGVKAIAV 353

Query: 226 ------SDQEISSSTIEKAQKLV------SEGMEKEKYMPIIWEPFLVEGVE-VVDIACG 272
                 S+   S S   +    V      S G   +        P  V  +  +  ++  
Sbjct: 354 GNSFPLSNSNGSYSLAVRGDGTVWAWGSNSTGQLGDGTTISRSRPAQVNALSGITAVSAS 413

Query: 273 FDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFHP--VSISSGLGHSLAICE 329
            DH+L +  +G + S G N  G+LG E     + PV ++      S+++G  HS+++ E
Sbjct: 414 SDHALAMRDDGTVWSWGKNTNGKLGDETTAHRLIPVQVHGLSGVRSVAAGESHSVSVRE 472



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 96/363 (26%), Positives = 164/363 (45%), Gaps = 56/363 (15%)

Query: 37  QGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQL 96
           Q ALGL  S + V   +  PT +        +V+ G  H+L +  +G VWAWG N+  QL
Sbjct: 121 QNALGLSASASFV--LSSSPTCI------APAVAVGTQHTLLLRPDGTVWAWGPNDYGQL 172

Query: 97  GRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKD 156
           G G   +R     P +V GL  +   A  AS   S A+ DDG++W WG +  GQLG G  
Sbjct: 173 GDGTTTNRPV---PVQVGGLSGIRAVA--ASSDHSLAVRDDGTVWAWGINSSGQLGDGT- 226

Query: 157 ITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSP- 215
             + + P +V  L+   I +V+ G G++LA   DG ++ WG ++ G++G+       +P 
Sbjct: 227 TNDRLTPVQVAGLS--SIKRVAAGDGYSLAVHGDGTVWAWGINSSGQLGDGTTTDRLTPG 284

Query: 216 ----LDSNIDRSSESDQEISSSTI-------------EKAQKLVSEGMEKEKYMPIIWEP 258
               L   ++ S+     + S+ +                   + +G   ++  P+  + 
Sbjct: 285 RVKGLSEVVEVSAAKYSLLGSAHVLAVRGDGTVWAWGNNGSGQLGDGTTTDRLTPV--QV 342

Query: 259 FLVEGVEVVDIACGF-------DHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDIN 311
             ++GV+ + +   F        +SL +  +G + + GSN  GQLG         P  +N
Sbjct: 343 SELDGVKAIAVGNSFPLSNSNGSYSLAVRGDGTVWAWGSNSTGQLGDGTTISRSRPAQVN 402

Query: 312 FHP--VSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPDN--VPLVVEG 367
                 ++S+   H+LA+ +  +         + SWG N + +LG     +  +P+ V G
Sbjct: 403 ALSGITAVSASSDHALAMRDDGT---------VWSWGKNTNGKLGDETTAHRLIPVQVHG 453

Query: 368 LEG 370
           L G
Sbjct: 454 LSG 456



 Score = 72.0 bits (175), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 54/136 (39%), Positives = 74/136 (54%), Gaps = 12/136 (8%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAW 88
           V ++GD   G LG  T+      D   P  V GL S V ++++G++H LA+ N+G VWAW
Sbjct: 724 VWAWGDNYSGQLGDGTTT-----DRLTPVLVSGL-SGVKALASGNHHFLALRNDGTVWAW 777

Query: 89  GRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKR 148
           G N   QLG G    R+T   P +V GL  V + AA  +   S A+  DG++W WG +  
Sbjct: 778 GDNYYSQLGDGTRTQRST---PVQVRGLSDVKLIAAGENH--SMAVRKDGTVWTWGLNTS 832

Query: 149 GQLGLG-KDITEAIVP 163
           GQLG G  D +   VP
Sbjct: 833 GQLGNGLLDFSALPVP 848



 Score = 68.2 bits (165), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 55/152 (36%), Positives = 80/152 (52%), Gaps = 9/152 (5%)

Query: 55  EPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVE 114
           +P +V GL S V +V+A    S  V +NG VWAWG N   QLG G    R T   P  V 
Sbjct: 695 KPVQVSGL-SGVKAVAAAIVSSAVVRDNGTVWAWGDNYSGQLGDGTTTDRLT---PVLVS 750

Query: 115 GLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKI 174
           GL  V   A+     +  A+ +DG++W WG +   QLG G   T+   P +V  L+  K+
Sbjct: 751 GLSGVKALASGNHHFL--ALRNDGTVWAWGDNYYSQLGDGTR-TQRSTPVQVRGLSDVKL 807

Query: 175 VKVSFGWGHALAQTEDGKLFGWGYSADGRIGN 206
           +    G  H++A  +DG ++ WG +  G++GN
Sbjct: 808 IAA--GENHSMAVRKDGTVWTWGLNTSGQLGN 837


>gi|444915471|ref|ZP_21235603.1| BNR repeat domain protein [Cystobacter fuscus DSM 2262]
 gi|444713402|gb|ELW54302.1| BNR repeat domain protein [Cystobacter fuscus DSM 2262]
          Length = 752

 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 107/324 (33%), Positives = 152/324 (46%), Gaps = 65/324 (20%)

Query: 19  IFMRSASGTAVVSFGDGSQGALGLPTSLTGVGGDAYE------------PTRVPGLPSDV 66
           + ++  SG A V+ G G   AL    ++   G +AY             P +V GL S V
Sbjct: 92  VQVQGLSGVAAVAAGHGHSLALRYDGTVWAWGNNAYGQLGDDTRDNRTVPVQVTGL-SGV 150

Query: 67  TSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFA 126
            SV AG  HSLAV ++G+VWAWGRN   QLG G  + RA    P +V GL    V +  A
Sbjct: 151 VSVVAGDTHSLAVRSDGSVWAWGRNTSGQLGDGTRDDRAV---PVQVTGLS--GVVSVAA 205

Query: 127 SGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALA 186
            G  S A+  DGS+W WG +  GQLG G       VP RVE ++G  +V V+ G  H+LA
Sbjct: 206 GGNHSLAVRSDGSVWAWGNNASGQLG-GAPEAAYPVPWRVEDVSG--VVAVAAGQYHSLA 262

Query: 187 QTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGM 246
              DG ++ WG +  G++G           D  ++ +S                      
Sbjct: 263 VRYDGTVWAWGDNLYGQLG-----------DGKLEGNSR--------------------- 290

Query: 247 EKEKYMPIIWEPFLVEGV-EVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGM 305
                    W P  V G+  VV ++ GF HSLV+  +G + + G+N YGQLG   +    
Sbjct: 291 ---------WLPKQVPGLGGVVAVSAGFYHSLVVRSDGTVWAWGNNAYGQLGGGSRAHAA 341

Query: 306 FPVDI--NFHPVSISSGLGHSLAI 327
            PV +      V++++G  HSL +
Sbjct: 342 SPVQVLGVSGAVAVAAGYRHSLVV 365



 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 116/360 (32%), Positives = 167/360 (46%), Gaps = 52/360 (14%)

Query: 28  AVVSFGDGSQGALGLPTSLTGVGGDAYE-PTRVPGLPSDVTSVSAGHYHSLAVTNNGAVW 86
           +V ++G+ + G LG      G    AY  P RV  + S V +V+AG YHSLAV  +G VW
Sbjct: 218 SVWAWGNNASGQLG------GAPEAAYPVPWRVEDV-SGVVAVAAGQYHSLAVRYDGTVW 270

Query: 87  AWGRNNEVQLGRGALESRATWNDPKRVEGLDQ-VNVCAAFASGVVSSAIGDDGSLWVWGK 145
           AWG N   QLG G LE  + W  PK+V GL   V V A F   +V   +  DG++W WG 
Sbjct: 271 AWGDNLYGQLGDGKLEGNSRWL-PKQVPGLGGVVAVSAGFYHSLV---VRSDGTVWAWGN 326

Query: 146 SKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIG 205
           +  GQLG G   + A   S V+ L     V V+ G+ H+L    DG L+ WG + DG+ G
Sbjct: 327 NAYGQLGGG---SRAHAASPVQVLGVSGAVAVAAGYRHSLVVNSDGTLWAWGSNLDGQRG 383

Query: 206 NLGKALESSP-----LDSNIDRSSESDQE---ISSSTI----EKAQKLVSEGMEKEKYMP 253
           +       +P     L   +  ++        +S  T+    + A   + +G    +++P
Sbjct: 384 DGTLTRYPTPGRVPGLSGVVSVAAGGGHVLALLSDGTVWAWGDNASGQLGDGTRHSRWVP 443

Query: 254 IIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDIN-- 311
                 + E   VV +A G   SL +  +G + S G N YGQLG    D    P+ +   
Sbjct: 444 ----RQVPELSGVVAVAAGSSFSLAVRYDGSVWSWGDNAYGQLGHGSTDASSVPLHVREL 499

Query: 312 FHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLG---------RMGPDNVP 362
              V++++G  H+LA   VR+     G      WG+N   QLG         R  P  VP
Sbjct: 500 SEVVAVAAGSMHALA---VRADGTVWG------WGFNDYGQLGDGFEGISARRYSPVQVP 550



 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 90/298 (30%), Positives = 137/298 (45%), Gaps = 35/298 (11%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAW 88
           V ++GD + G LG  T  +      + P +VP L S V +V+AG   SLAV  +G+VW+W
Sbjct: 421 VWAWGDNASGQLGDGTRHS-----RWVPRQVPEL-SGVVAVAAGSSFSLAVRYDGSVWSW 474

Query: 89  GRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKR 148
           G N   QLG G+ ++ +    P  V  L +V   A  A  + + A+  DG++W WG +  
Sbjct: 475 GDNAYGQLGHGSTDASSV---PLHVRELSEV--VAVAAGSMHALAVRADGTVWGWGFNDY 529

Query: 149 GQLGLGKDITEA--IVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGN 206
           GQLG G +   A    P +V  L+G   V   F  GH+LA   DG ++ WG + D  +G+
Sbjct: 530 GQLGDGFEGISARRYSPVQVPGLSGMVSVAADF--GHSLAVRADGTVWAWGNNTDSELGD 587

Query: 207 LGKALESSPLD-------------SNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMP 253
                   PL               N   +  +D  + +     A +L  +G    + +P
Sbjct: 588 GTTTRRLVPLRVNAPGTVALLSAGYNYSMAMRADGSLWAWGTNFAGQL-GDGSTTSRAVP 646

Query: 254 IIWEPFLVEG-VEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDI 310
           +      V+G V    +A G  HS+ +G +G L + G N  GQLG         PV +
Sbjct: 647 V-----RVQGPVRASTLAAGQSHSMAVGSDGFLWAWGFNFEGQLGDGTLTHHALPVRV 699



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 99/302 (32%), Positives = 140/302 (46%), Gaps = 49/302 (16%)

Query: 75  HSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSS-A 133
           HSLAV  +G VW  G N   QLG G   SR T   P +V+GL  V   AA A+G   S A
Sbjct: 59  HSLAVRPDGTVWTTGGNGHGQLGDGTTLSRRT---PVQVQGLSGV---AAVAAGHGHSLA 112

Query: 134 IGDDGSLWVWGKSKRGQLGLGKDITE-AIVPSRVEALAGEKIVKVSFGWGHALAQTEDGK 192
           +  DG++W WG +  GQ  LG D  +   VP +V  L+G  +V V  G  H+LA   DG 
Sbjct: 113 LRYDGTVWAWGNNAYGQ--LGDDTRDNRTVPVQVTGLSG--VVSVVAGDTHSLAVRSDGS 168

Query: 193 LFGWGYSADGRIGNLGKALESSPLD-------------SNIDRSSESDQEISSSTIEKAQ 239
           ++ WG +  G++G+  +   + P+               N   +  SD  + +     + 
Sbjct: 169 VWAWGRNTSGQLGDGTRDDRAVPVQVTGLSGVVSVAAGGNHSLAVRSDGSVWAWGNNASG 228

Query: 240 KLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGRE 299
           +L   G   E   P+ W    V G  VV +A G  HSL +  +G + + G N+YGQLG  
Sbjct: 229 QL---GGAPEAAYPVPWRVEDVSG--VVAVAAGQYHSLAVRYDGTVWAWGDNLYGQLGDG 283

Query: 300 KQDMG--MFPVDINFHP-----VSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQ 352
           K +      P  +   P     V++S+G  HSL    VRS         + +WG N   Q
Sbjct: 284 KLEGNSRWLPKQV---PGLGGVVAVSAGFYHSLV---VRSDGT------VWAWGNNAYGQ 331

Query: 353 LG 354
           LG
Sbjct: 332 LG 333



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 87/282 (30%), Positives = 131/282 (46%), Gaps = 23/282 (8%)

Query: 28  AVVSFGDGSQGALGLPTSLTGVGGDAYE-PTRVPGLPSDVTSVSAGHYHSLAVTNNGAVW 86
           +V S+GD + G LG  ++      DA   P  V  L S+V +V+AG  H+LAV  +G VW
Sbjct: 470 SVWSWGDNAYGQLGHGST------DASSVPLHVREL-SEVVAVAAGSMHALAVRADGTVW 522

Query: 87  AWGRNNEVQLGRGALESRATWNDPKRVEGLD-QVNVCAAFASGVVSSAIGDDGSLWVWGK 145
            WG N+  QLG G     A    P +V GL   V+V A F     S A+  DG++W WG 
Sbjct: 523 GWGFNDYGQLGDGFEGISARRYSPVQVPGLSGMVSVAADFGH---SLAVRADGTVWAWGN 579

Query: 146 SKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIG 205
           +   +LG G   T  +VP RV A     +  +S G+ +++A   DG L+ WG +  G++G
Sbjct: 580 NTDSELGDGT-TTRRLVPLRVNAPG--TVALLSAGYNYSMAMRADGSLWAWGTNFAGQLG 636

Query: 206 NLGKALESSPLD-------SNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEP 258
           +      + P+        S +         + S     A     EG   +  +     P
Sbjct: 637 DGSTTSRAVPVRVQGPVRASTLAAGQSHSMAVGSDGFLWAWGFNFEGQLGDGTLTHHALP 696

Query: 259 FLVEGVE-VVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGRE 299
             V G+  VV +    + SL +  +G L + G+N  GQLG +
Sbjct: 697 VRVPGMSGVVAVDVTLNLSLAVRSDGSLWAWGNNDVGQLGTQ 738



 Score = 55.5 bits (132), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 45/118 (38%), Positives = 61/118 (51%), Gaps = 14/118 (11%)

Query: 258 PFLVEGVE-VVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFHP-- 314
           P  V+G+  V  +A G  HSL L  +G + + G+N YGQLG + +D    PV +      
Sbjct: 91  PVQVQGLSGVAAVAAGHGHSLALRYDGTVWAWGNNAYGQLGDDTRDNRTVPVQVTGLSGV 150

Query: 315 VSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPDN--VPLVVEGLEG 370
           VS+ +G  HSLA   VRS         + +WG N S QLG    D+  VP+ V GL G
Sbjct: 151 VSVVAGDTHSLA---VRSDG------SVWAWGRNTSGQLGDGTRDDRAVPVQVTGLSG 199


>gi|354584103|ref|ZP_09003000.1| Listeria/Bacterioides repeat-containing protein [Paenibacillus
           lactis 154]
 gi|353197365|gb|EHB62858.1| Listeria/Bacterioides repeat-containing protein [Paenibacillus
           lactis 154]
          Length = 1286

 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 98/318 (30%), Positives = 163/318 (51%), Gaps = 42/318 (13%)

Query: 71  AGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVV 130
           AG+YH+ ++ ++G V++WG  +  QLG G   +R T   P   +GL+ V       +GV 
Sbjct: 40  AGYYHTASLVSSGEVYSWGYGDRGQLGNGTWSARTT---PVMAKGLNHV---IDVHTGVR 93

Query: 131 SS-AIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTE 189
           S+ A+  DG++W WG ++ GQLG+G  +T+  VP +V  L+G K V    G+ H++A +E
Sbjct: 94  STMALRSDGTVWTWGSNENGQLGIGT-VTDMNVPGQVSGLSGIKAVSGGLGY-HSMALSE 151

Query: 190 DGKLFGWGYSADGRIGNLGKALESSPLD-------------SNIDRSSESDQEISSSTIE 236
           DG ++ WG + +G +GN     +++P+                   + +SD  + +  + 
Sbjct: 152 DGSVWTWGKNDNGELGNGTTLQQNTPVQVAGLNDVTAIAAGGYFSLALKSDGTVWAWGVN 211

Query: 237 KAQKLVSEGMEKEKYMPIIWEPFLVEGV-EVVDIACGFDHSLVLGRNGVLLSCGSNVYGQ 295
              +L  +G   ++Y+P+      V G+ +V+ IA G  HSL + ++G + + G N YG 
Sbjct: 212 GDGEL-GDGTTTDRYVPV-----QVAGLTDVMAIAAGGSHSLAVTQDGTVWAWGKNTYGT 265

Query: 296 LGREKQDMGMFPVDIN--FHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQL 353
           LG   +     PV I    H V+++ G  HSLA+   R+ NV        SWG N   QL
Sbjct: 266 LGDGTRTNRTRPVQIKNLQHIVAVAGGGYHSLALD--RTGNVW-------SWGDNSQRQL 316

Query: 354 --GRMGPDNVPLVVEGLE 369
             G      +P+ V G+E
Sbjct: 317 GVGSNASSLIPVPVSGIE 334



 Score =  102 bits (253), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 105/354 (29%), Positives = 158/354 (44%), Gaps = 71/354 (20%)

Query: 4   LKSVVHNHVNVLTSRIFMRSASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLP 63
           L  V+  H  V   R  M   S   V ++G    G LG+     G   D   P +V GL 
Sbjct: 82  LNHVIDVHTGV---RSTMALRSDGTVWTWGSNENGQLGI-----GTVTDMNVPGQVSGL- 132

Query: 64  SDVTSVSAGH-YHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVC 122
           S + +VS G  YHS+A++ +G+VW WG+N+  +LG G    +   N P +V GL+ V   
Sbjct: 133 SGIKAVSGGLGYHSMALSEDGSVWTWGKNDNGELGNGTTLQQ---NTPVQVAGLNDVTAI 189

Query: 123 AAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWG 182
           A  A G  S A+  DG++W WG +  G+LG G   T+  VP +V  L    ++ ++ G  
Sbjct: 190 A--AGGYFSLALKSDGTVWAWGVNGDGELGDGT-TTDRYVPVQVAGLT--DVMAIAAGGS 244

Query: 183 HALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLV 242
           H+LA T+DG ++ WG +  G +G+  +   + P+                  I+  Q +V
Sbjct: 245 HSLAVTQDGTVWAWGKNTYGTLGDGTRTNRTRPVQ-----------------IKNLQHIV 287

Query: 243 SEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQD 302
           +                         +A G  HSL L R G + S G N   QLG     
Sbjct: 288 A-------------------------VAGGGYHSLALDRTGNVWSWGDNSQRQLGVGSNA 322

Query: 303 MGMFPVDIN--FHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLG 354
             + PV ++   H   I++G  HS+A+   +   V G       WG+N   QLG
Sbjct: 323 SSLIPVPVSGIEHVREIAAGGFHSVAMK--KDGTVWG-------WGFNGGGQLG 367



 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 56/168 (33%), Positives = 97/168 (57%), Gaps = 9/168 (5%)

Query: 48  GVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATW 107
           G   D Y P +V GL +DV +++AG  HSLAVT +G VWAWG+N    LG G   +R   
Sbjct: 219 GTTTDRYVPVQVAGL-TDVMAIAAGGSHSLAVTQDGTVWAWGKNTYGTLGDG---TRTNR 274

Query: 108 NDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVE 167
             P +++ L   ++ A    G  S A+   G++W WG + + QLG+G + + +++P  V 
Sbjct: 275 TRPVQIKNLQ--HIVAVAGGGYHSLALDRTGNVWSWGDNSQRQLGVGSNAS-SLIPVPVS 331

Query: 168 ALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSP 215
            +  E + +++ G  H++A  +DG ++GWG++  G++G+   +   +P
Sbjct: 332 GI--EHVREIAAGGFHSVAMKKDGTVWGWGFNGGGQLGDGTSSTRDTP 377



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 46/129 (35%), Positives = 66/129 (51%), Gaps = 11/129 (8%)

Query: 31  SFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGR 90
           ++G  + G LG      G   +   P ++  L   + +V+ G YHSLA+   G VW+WG 
Sbjct: 257 AWGKNTYGTLG-----DGTRTNRTRPVQIKNL-QHIVAVAGGGYHSLALDRTGNVWSWGD 310

Query: 91  NNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQ 150
           N++ QLG G   S A+   P  V G++ V   A  A G  S A+  DG++W WG +  GQ
Sbjct: 311 NSQRQLGVG---SNASSLIPVPVSGIEHVREIA--AGGFHSVAMKKDGTVWGWGFNGGGQ 365

Query: 151 LGLGKDITE 159
           LG G   T 
Sbjct: 366 LGDGTSSTR 374



 Score = 43.9 bits (102), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 29/76 (38%), Positives = 40/76 (52%), Gaps = 6/76 (7%)

Query: 31  SFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGR 90
           S+GD SQ  LG+     G    +  P  V G+   V  ++AG +HS+A+  +G VW WG 
Sbjct: 307 SWGDNSQRQLGV-----GSNASSLIPVPVSGI-EHVREIAAGGFHSVAMKKDGTVWGWGF 360

Query: 91  NNEVQLGRGALESRAT 106
           N   QLG G   +R T
Sbjct: 361 NGGGQLGDGTSSTRDT 376


>gi|115373190|ref|ZP_01460491.1| BNR repeat domain protein [Stigmatella aurantiaca DW4/3-1]
 gi|115369791|gb|EAU68725.1| BNR repeat domain protein [Stigmatella aurantiaca DW4/3-1]
          Length = 859

 Score =  113 bits (282), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 101/346 (29%), Positives = 162/346 (46%), Gaps = 71/346 (20%)

Query: 28  AVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWA 87
           +V ++G  + G LG  T++     D     +VPGL +D+T+++AG++HSLA+ N+G VW 
Sbjct: 530 SVWTWGSNAYGQLGDGTAI-----DRATAAQVPGL-TDITALAAGNHHSLALRNDGTVWV 583

Query: 88  WGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSK 147
           WG N+  QLG G + SR T   P +V GL  +    A  +  V  A+  +G++WVWG + 
Sbjct: 584 WGSNDFGQLGDGTVTSRKT---PVQVSGLSAMRAVEAGPAHSV--AVHLNGTVWVWGNND 638

Query: 148 RGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNL 207
            GQLG G  +T   +P +V  L G  +  V+ G  H+LA   DG L+ WGY+  G++GN 
Sbjct: 639 FGQLGDGT-VTSRAMPVQVSGLTG--VTAVAVGVYHSLALRNDGTLWAWGYNNVGQLGNG 695

Query: 208 GKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVE-V 266
              ++S+P                                             V G+  V
Sbjct: 696 TSGIQSTPAQ-------------------------------------------VPGLTGV 712

Query: 267 VDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDIN--FHPVSISSGLGHS 324
           + +A G  HSL L  +G +   G+N +GQLG         P  +    + +++++G  ++
Sbjct: 713 IALAAGNGHSLALRTDGTVWGWGANSFGQLGDGTTTPRSTPTQVPGLTNVIALNAGAFYT 772

Query: 325 LAICEVRSSNVTGGARGIVSWGWNRSSQL--GRMGPDNVPLVVEGL 368
           +A+   RS         +  WG   + QL  G +     P+ V GL
Sbjct: 773 VALRSERS---------VWEWGSKSAGQLGDGTVTQKTTPVQVSGL 809



 Score =  108 bits (270), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 103/336 (30%), Positives = 152/336 (45%), Gaps = 49/336 (14%)

Query: 48  GVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATW 107
           G   D   P +VPGL S V +V+A   HSLA+ ++G VWAWG N   QLG G    R T 
Sbjct: 178 GTATDRATPVQVPGLTS-VMAVAASEAHSLALRSDGTVWAWGDNGYGQLGDGTKAQRTT- 235

Query: 108 NDPKRVEGLDQVNVCAAFASGVV------SSAIGDDGSLWVWGKSKRGQLGLGKDITEAI 161
             P +V GL  V   AA  +G        S A+  DG++W WG +  GQLG G   TE  
Sbjct: 236 --PVQVLGLAGVTALAAGGNGTTVAISAHSLALRSDGTVWAWGDNSAGQLGDGT-TTERA 292

Query: 162 VPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPL----- 216
            P  V+ L    +  ++ G  H+LA  +DG ++ WG ++ G++G+       +P+     
Sbjct: 293 TP--VQVLGLTSVTALAAGAFHSLALRDDGTVWAWGNNSSGQLGDGTTTARPTPVQVPGL 350

Query: 217 ------------DSNIDRSSESDQEISSSTI----EKAQKLVSEGMEKEKYMPIIWEPFL 260
                       DS   R   S    S  T+        +   +GM   +  P+     L
Sbjct: 351 TSVIAVAAGGGDDSLGMRGDHSLALKSDGTVWAWGYNLSRQFGDGMPATRTTPVQ-VSEL 409

Query: 261 VEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDIN--FHPVSIS 318
             G  +V    G  H++VL  +G + + G N  GQLG     +   P+ ++      +++
Sbjct: 410 TGGTALV---AGDLHAVVLKSDGTVWAWGDNSSGQLGEGVTPVRAKPMQVSGLAAITALA 466

Query: 319 SGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLG 354
           +G GHS+A+         G   GI +WG NR  QLG
Sbjct: 467 TGDGHSVAV---------GSDGGIWAWGDNRRGQLG 493



 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 92/275 (33%), Positives = 139/275 (50%), Gaps = 37/275 (13%)

Query: 56  PTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEG 115
           P +V GL S + +V AG  HS+AV  NG VW WG N+  QLG G + SRA    P +V G
Sbjct: 603 PVQVSGL-SAMRAVEAGPAHSVAVHLNGTVWVWGNNDFGQLGDGTVTSRAM---PVQVSG 658

Query: 116 LDQVNVCAAFASGVVSS-AIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKI 174
           L  V    A A GV  S A+ +DG+LW WG +  GQLG G    ++  P++V  L G  +
Sbjct: 659 LTGVT---AVAVGVYHSLALRNDGTLWAWGYNNVGQLGNGTSGIQS-TPAQVPGLTG--V 712

Query: 175 VKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLD----SNID--------- 221
           + ++ G GH+LA   DG ++GWG ++ G++G+      S+P      +N+          
Sbjct: 713 IALAAGNGHSLALRTDGTVWGWGANSFGQLGDGTTTPRSTPTQVPGLTNVIALNAGAFYT 772

Query: 222 ---RSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGV-EVVDIACGFDHSL 277
              RS  S  E  S    K+   + +G   +K  P+      V G+ +V  +A G  H+L
Sbjct: 773 VALRSERSVWEWGS----KSAGQLGDGTVTQKTTPV-----QVSGLTDVTALAAGNAHAL 823

Query: 278 VLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINF 312
            L  +  + + G N  GQ+G     +   PV+++F
Sbjct: 824 ALRTDRTVWAWGGNQRGQIGDGTASIMPAPVNVSF 858



 Score = 98.2 bits (243), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 108/357 (30%), Positives = 163/357 (45%), Gaps = 45/357 (12%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAW 88
           V ++GD S G LG      GV     +P +V GL + +T+++ G  HS+AV ++G +WAW
Sbjct: 431 VWAWGDNSSGQLG-----EGVTPVRAKPMQVSGLAA-ITALATGDGHSVAVGSDGGIWAW 484

Query: 89  GRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKR 148
           G N   QLG G   +R     P +  GL  ++  AA  S   S A+  +GS+W WG +  
Sbjct: 485 GDNRRGQLGIGITATREI---PVQATGLASISALAAGDSH--SLALRGNGSVWTWGSNAY 539

Query: 149 GQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLG 208
           GQLG G  I  A   ++V  L    I  ++ G  H+LA   DG ++ WG +  G++G+  
Sbjct: 540 GQLGDGTAIDRATA-AQVPGL--TDITALAAGNHHSLALRNDGTVWVWGSNDFGQLGDGT 596

Query: 209 KALESSPLDSN---IDRSSESDQEISSSTIEKAQKLV---------SEGMEKEKYMPIIW 256
                +P+  +     R+ E+    S +        V          +G    + MP+  
Sbjct: 597 VTSRKTPVQVSGLSAMRAVEAGPAHSVAVHLNGTVWVWGNNDFGQLGDGTVTSRAMPV-- 654

Query: 257 EPFLVEGVE-VVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDIN--FH 313
               V G+  V  +A G  HSL L  +G L + G N  GQLG     +   P  +     
Sbjct: 655 ---QVSGLTGVTAVAVGVYHSLALRNDGTLWAWGYNNVGQLGNGTSGIQSTPAQVPGLTG 711

Query: 314 PVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQL--GRMGPDNVPLVVEGL 368
            +++++G GHSLA+   R+     G      WG N   QL  G   P + P  V GL
Sbjct: 712 VIALAAGNGHSLAL---RTDGTVWG------WGANSFGQLGDGTTTPRSTPTQVPGL 759



 Score = 94.4 bits (233), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 93/324 (28%), Positives = 146/324 (45%), Gaps = 45/324 (13%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAW 88
           V ++GD S G LG  T+      +   P +V GL S VT+++AG +HSLA+ ++G VWAW
Sbjct: 272 VWAWGDNSAGQLGDGTTT-----ERATPVQVLGLTS-VTALAAGAFHSLALRDDGTVWAW 325

Query: 89  GRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFAS-------GVVSSAIGDDGSLW 141
           G N+  QLG G   +R T   P +V GL  V   AA          G  S A+  DG++W
Sbjct: 326 GNNSSGQLGDGTTTARPT---PVQVPGLTSVIAVAAGGGDDSLGMRGDHSLALKSDGTVW 382

Query: 142 VWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSAD 201
            WG +   Q G G   T        E   G  +V       HA+    DG ++ WG ++ 
Sbjct: 383 AWGYNLSRQFGDGMPATRTTPVQVSELTGGTALVAGDL---HAVVLKSDGTVWAWGDNSS 439

Query: 202 GRIGN-----LGKALESSPLDSNIDRSSESDQEISSSTI-------EKAQKLVSEGMEKE 249
           G++G        K ++ S L +    ++     ++  +        +  +  +  G+   
Sbjct: 440 GQLGEGVTPVRAKPMQVSGLAAITALATGDGHSVAVGSDGGIWAWGDNRRGQLGIGITAT 499

Query: 250 KYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGR----EKQDMGM 305
           + +P+           +  +A G  HSL L  NG + + GSN YGQLG     ++     
Sbjct: 500 REIPVQATGL----ASISALAAGDSHSLALRGNGSVWTWGSNAYGQLGDGTAIDRATAAQ 555

Query: 306 FP--VDINFHPVSISSGLGHSLAI 327
            P   DI     ++++G  HSLA+
Sbjct: 556 VPGLTDI----TALAAGNHHSLAL 575



 Score = 92.0 bits (227), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 91/309 (29%), Positives = 141/309 (45%), Gaps = 65/309 (21%)

Query: 67  TSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFA 126
           T++ AG  H++ + ++G VWAWG N+  QLG G    RA    P +V GL  +    A A
Sbjct: 413 TALVAGDLHAVVLKSDGTVWAWGDNSSGQLGEGVTPVRA---KPMQVSGLAAIT---ALA 466

Query: 127 SGVVSS-AIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHAL 185
           +G   S A+G DG +W WG ++RGQLG+G   T  I P +   LA   I  ++ G  H+L
Sbjct: 467 TGDGHSVAVGSDGGIWAWGDNRRGQLGIGITATREI-PVQATGLA--SISALAAGDSHSL 523

Query: 186 AQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEG 245
           A   +G ++ WG +A G++G+           + IDR++ +                   
Sbjct: 524 ALRGNGSVWTWGSNAYGQLGD----------GTAIDRATAAQ------------------ 555

Query: 246 MEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGM 305
                       P L +   +  +A G  HSL L  +G +   GSN +GQLG        
Sbjct: 556 -----------VPGLTD---ITALAAGNHHSLALRNDGTVWVWGSNDFGQLGDGTVTSRK 601

Query: 306 FPVDINFHPV--SISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQL--GRMGPDNV 361
            PV ++      ++ +G  HS+A+      ++ G    +  WG N   QL  G +    +
Sbjct: 602 TPVQVSGLSAMRAVEAGPAHSVAV------HLNG---TVWVWGNNDFGQLGDGTVTSRAM 652

Query: 362 PLVVEGLEG 370
           P+ V GL G
Sbjct: 653 PVQVSGLTG 661



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 60/170 (35%), Positives = 91/170 (53%), Gaps = 9/170 (5%)

Query: 48  GVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATW 107
           G  G    P +VPGL + V +++AG+ HSLA+  +G VW WG N+  QLG G    R+T 
Sbjct: 695 GTSGIQSTPAQVPGL-TGVIALAAGNGHSLALRTDGTVWGWGANSFGQLGDGTTTPRST- 752

Query: 108 NDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVE 167
             P +V GL   NV A  A    + A+  + S+W WG    GQLG G  +T+   P +V 
Sbjct: 753 --PTQVPGL--TNVIALNAGAFYTVALRSERSVWEWGSKSAGQLGDGT-VTQKTTPVQVS 807

Query: 168 ALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLD 217
            L    +  ++ G  HALA   D  ++ WG +  G+IG+   ++  +P++
Sbjct: 808 GL--TDVTALAAGNAHALALRTDRTVWAWGGNQRGQIGDGTASIMPAPVN 855



 Score = 84.3 bits (207), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 94/325 (28%), Positives = 136/325 (41%), Gaps = 82/325 (25%)

Query: 68  SVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFAS 127
           +VSA   H+LA+  +G VWAWG N   QLG G    RAT   P +V GL   +V A  AS
Sbjct: 147 AVSAAGDHTLALRRDGTVWAWGFNGSGQLGNGTATDRAT---PVQVPGL--TSVMAVAAS 201

Query: 128 GVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAG---------EKIVKVS 178
              S A+  DG++W WG +  GQLG G    +   P +V  LAG            V +S
Sbjct: 202 EAHSLALRSDGTVWAWGDNGYGQLGDGTK-AQRTTPVQVLGLAGVTALAAGGNGTTVAIS 260

Query: 179 FGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKA 238
               H+LA   DG ++ WG ++ G++G+                          +T E+A
Sbjct: 261 ---AHSLALRSDGTVWAWGDNSAGQLGD-------------------------GTTTERA 292

Query: 239 QKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGR 298
             +   G+                   V  +A G  HSL L  +G + + G+N  GQLG 
Sbjct: 293 TPVQVLGL-----------------TSVTALAAGAFHSLALRDDGTVWAWGNNSSGQLGD 335

Query: 299 EKQDMGMFPVDIN--FHPVSISSGLG---------HSLAICEVRSSNVTGGARGIVSWGW 347
                   PV +      +++++G G         HSLA+   +S         + +WG+
Sbjct: 336 GTTTARPTPVQVPGLTSVIAVAAGGGDDSLGMRGDHSLAL---KSDGT------VWAWGY 386

Query: 348 NRSSQLGRMGP--DNVPLVVEGLEG 370
           N S Q G   P     P+ V  L G
Sbjct: 387 NLSRQFGDGMPATRTTPVQVSELTG 411


>gi|442319690|ref|YP_007359711.1| RCC1 repeat-containing protein [Myxococcus stipitatus DSM 14675]
 gi|441487332|gb|AGC44027.1| RCC1 repeat-containing protein [Myxococcus stipitatus DSM 14675]
          Length = 747

 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 94/294 (31%), Positives = 144/294 (48%), Gaps = 22/294 (7%)

Query: 27  TAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVW 86
           T V ++G  S+G +G      G   +  +P RV GL S +T++SAG YHSLA+  +G VW
Sbjct: 467 TTVWAWGVNSRGEVG-----DGTNANTSQPVRVLGL-SGITAISAGAYHSLALRTDGTVW 520

Query: 87  AWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKS 146
           AWG N   QLG G    +   N P +V GL  V   AA  S   S A+  DG++W WG +
Sbjct: 521 AWGFNRYGQLGNGGTVDQ---NQPVQVAGLSGVTAIAAGHS--HSLALCGDGTVWAWGYN 575

Query: 147 KRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGN 206
             GQ+G G +    I+P  V+A+    +  ++ G  H+LA   DG ++ WGY+  G++GN
Sbjct: 576 FDGQIGSGTN-NWHILP--VQAVGLSSVTAITAGGYHSLALRSDGTVWSWGYNGSGQLGN 632

Query: 207 LGKALESSPLD-SN------IDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPF 259
              A  ++P   SN      I         + S    +A     +G   +  +     P 
Sbjct: 633 GALASLNAPGPVSNLTGVVSIAAGDYHSLALRSDGTVRAWGFNFDGQIGDGSLTNRHVPV 692

Query: 260 LVEGVE-VVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINF 312
           +V G+  VV +  G  HS+ +  +G   + G+N  GQLG   ++  + PV +  
Sbjct: 693 MVAGMSGVVSVIAGDHHSMAMRSDGTTWAWGANTEGQLGDGTRNDSIIPVRVEL 746



 Score = 95.1 bits (235), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 103/324 (31%), Positives = 144/324 (44%), Gaps = 66/324 (20%)

Query: 51  GDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDP 110
           G +  P +VPGL   V +V+AG   +LA+  +G VWAWG N   QLG G + +R    +P
Sbjct: 188 GSSSVPVQVPGL-GGVIAVAAGGNTTLALRADGTVWAWGDNRSGQLGDGTVTTRG---NP 243

Query: 111 KRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALA 170
            +V GL  V   +A AS  V  A+  +G+ W WG +  GQLG G   T+  VP++V    
Sbjct: 244 LQVLGLTGVVTLSAGASHCV--ALRSNGTAWTWGLNTMGQLGDGT-TTQRSVPAQVGLTD 300

Query: 171 GEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEI 230
               V  ++   H+LA   DG ++ WG   D R   LG    +S L              
Sbjct: 301 VMAAVAGNY---HSLAVRSDGAVWAWG---DNRYRQLGNGNMTSSL-------------- 340

Query: 231 SSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGS 290
                                +PI  +  L  G+ +V    GF HSL L  +G + S G 
Sbjct: 341 ---------------------LPI--QAGLSGGITLV---AGFKHSLTLRADGTVWSWGD 374

Query: 291 NVYGQLGREKQDMGMFPVDINFHPV---SISSGLGHSLAICEVRSSNVTGGARGIVSWGW 347
           NV+GQLG       M PV +    +    ++SG  HS+     R S     A  + SWG 
Sbjct: 375 NVFGQLGDGTYQPRMSPVRVATTTLGNPGVASGQLHSV----YRDS-----AGRVWSWGD 425

Query: 348 NRSSQLGR-MGPDNVPLVVEGLEG 370
           N   QLG  +G D +   + GL G
Sbjct: 426 NEDGQLGNGIGADKLTPALTGLTG 449



 Score = 94.0 bits (232), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 92/307 (29%), Positives = 139/307 (45%), Gaps = 40/307 (13%)

Query: 64  SDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCA 123
           + V  +S G YHS+ V ++G+VWAWG N + QLG G   +  T   P +V+ L       
Sbjct: 50  ASVARLSLGQYHSVGVHSDGSVWAWGFNRQGQLGNGLFTNSPT---PVKVKNLTD---AV 103

Query: 124 AFASGVVSS-AIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWG 182
           A ASG   S A+  DG++W WG +  GQLG G     A  P +V+ L+G  ++ V+ G+ 
Sbjct: 104 AVASGDSHSLALRSDGTVWAWGDNYSGQLGTGSTAVSA-EPVQVQGLSG--VLSVASGFA 160

Query: 183 HALAQTEDGKLFGWGYSADGRIGNLGKALESSPLD-------------SNIDRSSESDQE 229
           H+ A   DG ++ WG +   ++G L     S P+               N   +  +D  
Sbjct: 161 HSAALRSDGTVWAWGDNRYRQLGPLTAGSSSVPVQVPGLGGVIAVAAGGNTTLALRADGT 220

Query: 230 ISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVE-VVDIACGFDHSLVLGRNGVLLSC 288
           + +    ++ +L  +G    +       P  V G+  VV ++ G  H + L  NG   + 
Sbjct: 221 VWAWGDNRSGQL-GDGTVTTRG-----NPLQVLGLTGVVTLSAGASHCVALRSNGTAWTW 274

Query: 289 GSNVYGQLGREKQDMGMFPVDINFHPVSIS-SGLGHSLAICEVRSSNVTGGARGIVSWGW 347
           G N  GQLG         P  +    V  + +G  HSLA   VRS         + +WG 
Sbjct: 275 GLNTMGQLGDGTTTQRSVPAQVGLTDVMAAVAGNYHSLA---VRSDGA------VWAWGD 325

Query: 348 NRSSQLG 354
           NR  QLG
Sbjct: 326 NRYRQLG 332



 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 105/359 (29%), Positives = 166/359 (46%), Gaps = 38/359 (10%)

Query: 24  ASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNG 83
           A GT V ++GD   G LG  T  T        P +V GL + V ++SAG  H +A+ +NG
Sbjct: 217 ADGT-VWAWGDNRSGQLGDGTVTT-----RGNPLQVLGL-TGVVTLSAGASHCVALRSNG 269

Query: 84  AVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVW 143
             W WG N   QLG G    R+    P +V GL   +V AA A    S A+  DG++W W
Sbjct: 270 TAWTWGLNTMGQLGDGTTTQRSV---PAQV-GL--TDVMAAVAGNYHSLAVRSDGAVWAW 323

Query: 144 GKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGR 203
           G ++  QLG G ++T +++P +     G  +V    G+ H+L    DG ++ WG +  G+
Sbjct: 324 GDNRYRQLGNG-NMTSSLLPIQAGLSGGITLVA---GFKHSLTLRADGTVWSWGDNVFGQ 379

Query: 204 IGNLGKALESSPL---DSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYM-----PII 255
           +G+       SP+    + +     +  ++ S   + A ++ S G  ++  +        
Sbjct: 380 LGDGTYQPRMSPVRVATTTLGNPGVASGQLHSVYRDSAGRVWSWGDNEDGQLGNGIGADK 439

Query: 256 WEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFHP- 314
             P L      V +  G  H++VL  +  + + G N  G++G         PV +     
Sbjct: 440 LTPALTGLTGAVSVVAGNRHTVVLKGDTTVWAWGVNSRGEVGDGTNANTSQPVRVLGLSG 499

Query: 315 -VSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGP--DNVPLVVEGLEG 370
             +IS+G  HSLA+   R+         + +WG+NR  QLG  G    N P+ V GL G
Sbjct: 500 ITAISAGAYHSLAL---RTDGT------VWAWGFNRYGQLGNGGTVDQNQPVQVAGLSG 549



 Score = 91.3 bits (225), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 90/300 (30%), Positives = 136/300 (45%), Gaps = 26/300 (8%)

Query: 64  SDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCA 123
           +DV +  AG+YHSLAV ++GAVWAWG N   QLG G + S      P +      + + A
Sbjct: 299 TDVMAAVAGNYHSLAVRSDGAVWAWGDNRYRQLGNGNMTSSLL---PIQAGLSGGITLVA 355

Query: 124 AFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGH 183
            F   +   A   DG++W WG +  GQLG G      + P RV A        V+ G  H
Sbjct: 356 GFKHSLTLRA---DGTVWSWGDNVFGQLGDGT-YQPRMSPVRV-ATTTLGNPGVASGQLH 410

Query: 184 ALAQTEDGKLFGWGYSADGRIGN------LGKALESSPLDSNIDRSSESDQEISSSTIEK 237
           ++ +   G+++ WG + DG++GN      L  AL       ++   +     +   T   
Sbjct: 411 SVYRDSAGRVWSWGDNEDGQLGNGIGADKLTPALTGLTGAVSVVAGNRHTVVLKGDTTVW 470

Query: 238 AQKLVSEGMEKEKYMPIIWEPFLVEGVE-VVDIACGFDHSLVLGRNGVLLSCGSNVYGQL 296
           A  + S G   +       +P  V G+  +  I+ G  HSL L  +G + + G N YGQL
Sbjct: 471 AWGVNSRGEVGDGTNANTSQPVRVLGLSGITAISAGAYHSLALRTDGTVWAWGFNRYGQL 530

Query: 297 GREKQDMGMFPVDINFHP--VSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLG 354
           G         PV +       +I++G  HSLA+C         G   + +WG+N   Q+G
Sbjct: 531 GNGGTVDQNQPVQVAGLSGVTAIAAGHSHSLALC---------GDGTVWAWGYNFDGQIG 581



 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 106/356 (29%), Positives = 152/356 (42%), Gaps = 80/356 (22%)

Query: 24  ASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVT----SVSAGHYHSLAV 79
           A GT V S+GD   G LG  T         Y+P   P   +  T     V++G  HS+  
Sbjct: 365 ADGT-VWSWGDNVFGQLGDGT---------YQPRMSPVRVATTTLGNPGVASGQLHSVYR 414

Query: 80  TNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGS 139
            + G VW+WG N + QLG G    + T   P        V+V A     VV   +  D +
Sbjct: 415 DSAGRVWSWGDNEDGQLGNGIGADKLT---PALTGLTGAVSVVAGNRHTVV---LKGDTT 468

Query: 140 LWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYS 199
           +W WG + RG++G G +   +  P RV  L+G  I  +S G  H+LA   DG ++ WG++
Sbjct: 469 VWAWGVNSRGEVGDGTNANTS-QPVRVLGLSG--ITAISAGAYHSLALRTDGTVWAWGFN 525

Query: 200 ADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPF 259
             G++GN G                         T+++ Q                  P 
Sbjct: 526 RYGQLGNGG-------------------------TVDQNQ------------------PV 542

Query: 260 LVEGVE-VVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVD-INFHPVS- 316
            V G+  V  IA G  HSL L  +G + + G N  GQ+G    +  + PV  +    V+ 
Sbjct: 543 QVAGLSGVTAIAAGHSHSLALCGDGTVWAWGYNFDGQIGSGTNNWHILPVQAVGLSSVTA 602

Query: 317 ISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGR--MGPDNVPLVVEGLEG 370
           I++G  HSLA+   RS         + SWG+N S QLG   +   N P  V  L G
Sbjct: 603 ITAGGYHSLAL---RSDGT------VWSWGYNGSGQLGNGALASLNAPGPVSNLTG 649



 Score = 58.9 bits (141), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 63/227 (27%), Positives = 95/227 (41%), Gaps = 58/227 (25%)

Query: 151 LGLGKDITEAIVP--SRVEALAGE-KIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNL 207
           LG G+D+ +A  P      ALAG   + ++S G  H++    DG ++ WG++  G++GN 
Sbjct: 26  LGCGQDLPQARAPVDQTRAALAGRASVARLSLGQYHSVGVHSDGSVWAWGFNRQGQLGN- 84

Query: 208 GKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVV 267
                +SP                  T  K + L                       + V
Sbjct: 85  -GLFTNSP------------------TPVKVKNLT----------------------DAV 103

Query: 268 DIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFHP--VSISSGLGHSL 325
            +A G  HSL L  +G + + G N  GQLG     +   PV +      +S++SG  HS 
Sbjct: 104 AVASGDSHSLALRSDGTVWAWGDNYSGQLGTGSTAVSAEPVQVQGLSGVLSVASGFAHSA 163

Query: 326 AICEVRSSNVTGGARGIVSWGWNRSSQLGRM--GPDNVPLVVEGLEG 370
           A+   RS         + +WG NR  QLG +  G  +VP+ V GL G
Sbjct: 164 AL---RSDGT------VWAWGDNRYRQLGPLTAGSSSVPVQVPGLGG 201


>gi|310817521|ref|YP_003949879.1| regulator of chromosome condensation, rcc1 [Stigmatella aurantiaca
           DW4/3-1]
 gi|309390593|gb|ADO68052.1| Regulator of chromosome condensation, RCC1 [Stigmatella aurantiaca
           DW4/3-1]
          Length = 860

 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 101/346 (29%), Positives = 162/346 (46%), Gaps = 71/346 (20%)

Query: 28  AVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWA 87
           +V ++G  + G LG  T++     D     +VPGL +D+T+++AG++HSLA+ N+G VW 
Sbjct: 531 SVWTWGSNAYGQLGDGTAI-----DRATAAQVPGL-TDITALAAGNHHSLALRNDGTVWV 584

Query: 88  WGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSK 147
           WG N+  QLG G + SR T   P +V GL  +    A  +  V  A+  +G++WVWG + 
Sbjct: 585 WGSNDFGQLGDGTVTSRKT---PVQVSGLSAMRAVEAGPAHSV--AVHLNGTVWVWGNND 639

Query: 148 RGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNL 207
            GQLG G  +T   +P +V  L G  +  V+ G  H+LA   DG L+ WGY+  G++GN 
Sbjct: 640 FGQLGDGT-VTSRAMPVQVSGLTG--VTAVAVGVYHSLALRNDGTLWAWGYNNVGQLGNG 696

Query: 208 GKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVE-V 266
              ++S+P                                             V G+  V
Sbjct: 697 TSGIQSTPAQ-------------------------------------------VPGLTGV 713

Query: 267 VDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDIN--FHPVSISSGLGHS 324
           + +A G  HSL L  +G +   G+N +GQLG         P  +    + +++++G  ++
Sbjct: 714 IALAAGNGHSLALRTDGTVWGWGANSFGQLGDGTTTPRSTPTQVPGLTNVIALNAGAFYT 773

Query: 325 LAICEVRSSNVTGGARGIVSWGWNRSSQL--GRMGPDNVPLVVEGL 368
           +A+   RS         +  WG   + QL  G +     P+ V GL
Sbjct: 774 VALRSERS---------VWEWGSKSAGQLGDGTVTQKTTPVQVSGL 810



 Score =  108 bits (269), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 103/336 (30%), Positives = 152/336 (45%), Gaps = 49/336 (14%)

Query: 48  GVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATW 107
           G   D   P +VPGL S V +V+A   HSLA+ ++G VWAWG N   QLG G    R T 
Sbjct: 179 GTATDRATPVQVPGLTS-VMAVAASEAHSLALRSDGTVWAWGDNGYGQLGDGTKAQRTT- 236

Query: 108 NDPKRVEGLDQVNVCAAFASGVV------SSAIGDDGSLWVWGKSKRGQLGLGKDITEAI 161
             P +V GL  V   AA  +G        S A+  DG++W WG +  GQLG G   TE  
Sbjct: 237 --PVQVLGLAGVTALAAGGNGTTVAISAHSLALRSDGTVWAWGDNSAGQLGDGT-TTERA 293

Query: 162 VPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPL----- 216
            P  V+ L    +  ++ G  H+LA  +DG ++ WG ++ G++G+       +P+     
Sbjct: 294 TP--VQVLGLTSVTALAAGAFHSLALRDDGTVWAWGNNSSGQLGDGTTTARPTPVQVPGL 351

Query: 217 ------------DSNIDRSSESDQEISSSTI----EKAQKLVSEGMEKEKYMPIIWEPFL 260
                       DS   R   S    S  T+        +   +GM   +  P+     L
Sbjct: 352 TSVIAVAAGGGDDSLGMRGDHSLALKSDGTVWAWGYNLSRQFGDGMPATRTTPVQ-VSEL 410

Query: 261 VEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDIN--FHPVSIS 318
             G  +V    G  H++VL  +G + + G N  GQLG     +   P+ ++      +++
Sbjct: 411 TGGTALV---AGDLHAVVLKSDGTVWAWGDNSSGQLGEGVTPVRAKPMQVSGLAAITALA 467

Query: 319 SGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLG 354
           +G GHS+A+         G   GI +WG NR  QLG
Sbjct: 468 TGDGHSVAV---------GSDGGIWAWGDNRRGQLG 494



 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 92/275 (33%), Positives = 139/275 (50%), Gaps = 37/275 (13%)

Query: 56  PTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEG 115
           P +V GL S + +V AG  HS+AV  NG VW WG N+  QLG G + SRA    P +V G
Sbjct: 604 PVQVSGL-SAMRAVEAGPAHSVAVHLNGTVWVWGNNDFGQLGDGTVTSRAM---PVQVSG 659

Query: 116 LDQVNVCAAFASGVVSS-AIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKI 174
           L  V    A A GV  S A+ +DG+LW WG +  GQLG G    ++  P++V  L G  +
Sbjct: 660 LTGVT---AVAVGVYHSLALRNDGTLWAWGYNNVGQLGNGTSGIQS-TPAQVPGLTG--V 713

Query: 175 VKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLD----SNID--------- 221
           + ++ G GH+LA   DG ++GWG ++ G++G+      S+P      +N+          
Sbjct: 714 IALAAGNGHSLALRTDGTVWGWGANSFGQLGDGTTTPRSTPTQVPGLTNVIALNAGAFYT 773

Query: 222 ---RSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGV-EVVDIACGFDHSL 277
              RS  S  E  S    K+   + +G   +K  P+      V G+ +V  +A G  H+L
Sbjct: 774 VALRSERSVWEWGS----KSAGQLGDGTVTQKTTPV-----QVSGLTDVTALAAGNAHAL 824

Query: 278 VLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINF 312
            L  +  + + G N  GQ+G     +   PV+++F
Sbjct: 825 ALRTDRTVWAWGGNQRGQIGDGTASIMPAPVNVSF 859



 Score = 97.8 bits (242), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 108/357 (30%), Positives = 163/357 (45%), Gaps = 45/357 (12%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAW 88
           V ++GD S G LG      GV     +P +V GL + +T+++ G  HS+AV ++G +WAW
Sbjct: 432 VWAWGDNSSGQLG-----EGVTPVRAKPMQVSGLAA-ITALATGDGHSVAVGSDGGIWAW 485

Query: 89  GRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKR 148
           G N   QLG G   +R     P +  GL  ++  AA  S   S A+  +GS+W WG +  
Sbjct: 486 GDNRRGQLGIGITATREI---PVQATGLASISALAAGDSH--SLALRGNGSVWTWGSNAY 540

Query: 149 GQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLG 208
           GQLG G  I  A   ++V  L    I  ++ G  H+LA   DG ++ WG +  G++G+  
Sbjct: 541 GQLGDGTAIDRATA-AQVPGL--TDITALAAGNHHSLALRNDGTVWVWGSNDFGQLGDGT 597

Query: 209 KALESSPLDSN---IDRSSESDQEISSSTIEKAQKLV---------SEGMEKEKYMPIIW 256
                +P+  +     R+ E+    S +        V          +G    + MP+  
Sbjct: 598 VTSRKTPVQVSGLSAMRAVEAGPAHSVAVHLNGTVWVWGNNDFGQLGDGTVTSRAMPV-- 655

Query: 257 EPFLVEGVE-VVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDIN--FH 313
               V G+  V  +A G  HSL L  +G L + G N  GQLG     +   P  +     
Sbjct: 656 ---QVSGLTGVTAVAVGVYHSLALRNDGTLWAWGYNNVGQLGNGTSGIQSTPAQVPGLTG 712

Query: 314 PVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQL--GRMGPDNVPLVVEGL 368
            +++++G GHSLA+   R+     G      WG N   QL  G   P + P  V GL
Sbjct: 713 VIALAAGNGHSLAL---RTDGTVWG------WGANSFGQLGDGTTTPRSTPTQVPGL 760



 Score = 94.4 bits (233), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 93/324 (28%), Positives = 146/324 (45%), Gaps = 45/324 (13%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAW 88
           V ++GD S G LG  T+      +   P +V GL S VT+++AG +HSLA+ ++G VWAW
Sbjct: 273 VWAWGDNSAGQLGDGTTT-----ERATPVQVLGLTS-VTALAAGAFHSLALRDDGTVWAW 326

Query: 89  GRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFAS-------GVVSSAIGDDGSLW 141
           G N+  QLG G   +R T   P +V GL  V   AA          G  S A+  DG++W
Sbjct: 327 GNNSSGQLGDGTTTARPT---PVQVPGLTSVIAVAAGGGDDSLGMRGDHSLALKSDGTVW 383

Query: 142 VWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSAD 201
            WG +   Q G G   T        E   G  +V       HA+    DG ++ WG ++ 
Sbjct: 384 AWGYNLSRQFGDGMPATRTTPVQVSELTGGTALVAGDL---HAVVLKSDGTVWAWGDNSS 440

Query: 202 GRIGN-----LGKALESSPLDSNIDRSSESDQEISSSTI-------EKAQKLVSEGMEKE 249
           G++G        K ++ S L +    ++     ++  +        +  +  +  G+   
Sbjct: 441 GQLGEGVTPVRAKPMQVSGLAAITALATGDGHSVAVGSDGGIWAWGDNRRGQLGIGITAT 500

Query: 250 KYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGR----EKQDMGM 305
           + +P+           +  +A G  HSL L  NG + + GSN YGQLG     ++     
Sbjct: 501 REIPVQATGL----ASISALAAGDSHSLALRGNGSVWTWGSNAYGQLGDGTAIDRATAAQ 556

Query: 306 FP--VDINFHPVSISSGLGHSLAI 327
            P   DI     ++++G  HSLA+
Sbjct: 557 VPGLTDI----TALAAGNHHSLAL 576



 Score = 91.7 bits (226), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 91/309 (29%), Positives = 141/309 (45%), Gaps = 65/309 (21%)

Query: 67  TSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFA 126
           T++ AG  H++ + ++G VWAWG N+  QLG G    RA    P +V GL  +    A A
Sbjct: 414 TALVAGDLHAVVLKSDGTVWAWGDNSSGQLGEGVTPVRA---KPMQVSGLAAIT---ALA 467

Query: 127 SGVVSS-AIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHAL 185
           +G   S A+G DG +W WG ++RGQLG+G   T  I P +   LA   I  ++ G  H+L
Sbjct: 468 TGDGHSVAVGSDGGIWAWGDNRRGQLGIGITATREI-PVQATGLA--SISALAAGDSHSL 524

Query: 186 AQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEG 245
           A   +G ++ WG +A G++G+           + IDR++ +                   
Sbjct: 525 ALRGNGSVWTWGSNAYGQLGD----------GTAIDRATAAQ------------------ 556

Query: 246 MEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGM 305
                       P L +   +  +A G  HSL L  +G +   GSN +GQLG        
Sbjct: 557 -----------VPGLTD---ITALAAGNHHSLALRNDGTVWVWGSNDFGQLGDGTVTSRK 602

Query: 306 FPVDINFHPV--SISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQL--GRMGPDNV 361
            PV ++      ++ +G  HS+A+      ++ G    +  WG N   QL  G +    +
Sbjct: 603 TPVQVSGLSAMRAVEAGPAHSVAV------HLNG---TVWVWGNNDFGQLGDGTVTSRAM 653

Query: 362 PLVVEGLEG 370
           P+ V GL G
Sbjct: 654 PVQVSGLTG 662



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 60/170 (35%), Positives = 91/170 (53%), Gaps = 9/170 (5%)

Query: 48  GVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATW 107
           G  G    P +VPGL + V +++AG+ HSLA+  +G VW WG N+  QLG G    R+T 
Sbjct: 696 GTSGIQSTPAQVPGL-TGVIALAAGNGHSLALRTDGTVWGWGANSFGQLGDGTTTPRST- 753

Query: 108 NDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVE 167
             P +V GL   NV A  A    + A+  + S+W WG    GQLG G  +T+   P +V 
Sbjct: 754 --PTQVPGL--TNVIALNAGAFYTVALRSERSVWEWGSKSAGQLGDGT-VTQKTTPVQVS 808

Query: 168 ALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLD 217
            L    +  ++ G  HALA   D  ++ WG +  G+IG+   ++  +P++
Sbjct: 809 GL--TDVTALAAGNAHALALRTDRTVWAWGGNQRGQIGDGTASIMPAPVN 856



 Score = 84.3 bits (207), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 94/325 (28%), Positives = 136/325 (41%), Gaps = 82/325 (25%)

Query: 68  SVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFAS 127
           +VSA   H+LA+  +G VWAWG N   QLG G    RAT   P +V GL   +V A  AS
Sbjct: 148 AVSAAGDHTLALRRDGTVWAWGFNGSGQLGNGTATDRAT---PVQVPGL--TSVMAVAAS 202

Query: 128 GVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAG---------EKIVKVS 178
              S A+  DG++W WG +  GQLG G    +   P +V  LAG            V +S
Sbjct: 203 EAHSLALRSDGTVWAWGDNGYGQLGDGTK-AQRTTPVQVLGLAGVTALAAGGNGTTVAIS 261

Query: 179 FGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKA 238
               H+LA   DG ++ WG ++ G++G+                          +T E+A
Sbjct: 262 ---AHSLALRSDGTVWAWGDNSAGQLGD-------------------------GTTTERA 293

Query: 239 QKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGR 298
             +   G+                   V  +A G  HSL L  +G + + G+N  GQLG 
Sbjct: 294 TPVQVLGL-----------------TSVTALAAGAFHSLALRDDGTVWAWGNNSSGQLGD 336

Query: 299 EKQDMGMFPVDIN--FHPVSISSGLG---------HSLAICEVRSSNVTGGARGIVSWGW 347
                   PV +      +++++G G         HSLA+   +S         + +WG+
Sbjct: 337 GTTTARPTPVQVPGLTSVIAVAAGGGDDSLGMRGDHSLAL---KSDGT------VWAWGY 387

Query: 348 NRSSQLGRMGP--DNVPLVVEGLEG 370
           N S Q G   P     P+ V  L G
Sbjct: 388 NLSRQFGDGMPATRTTPVQVSELTG 412


>gi|225438373|ref|XP_002274569.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC1 [Vitis
           vinifera]
 gi|296082603|emb|CBI21608.3| unnamed protein product [Vitis vinifera]
          Length = 445

 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 101/357 (28%), Positives = 160/357 (44%), Gaps = 67/357 (18%)

Query: 23  SASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPS-DVTSVSAGHYHSLAVTN 81
           S S T V S+G G  G LG      G   D + P  +  L    +  ++ G  H LAVT 
Sbjct: 84  SESFTQVYSWGWGDFGRLG-----HGNSSDLFTPQPIKALHGLRIKQIACGDSHCLAVTM 138

Query: 82  NGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLW 141
           +G V +WGRN   QLG G  E       P++++    V+V    A    ++A+ +DG L+
Sbjct: 139 DGEVQSWGRNQNGQLGLGTTEDSLV---PQKIQAFQGVSVKMVAAGAEHTAAVTEDGELY 195

Query: 142 VWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSAD 201
            WG  + G LGLG D  + +VP +V  + G K+VKV+ GW H ++ +  G L+ +G+S  
Sbjct: 196 GWGWGRYGNLGLG-DRNDRLVPEKVSTVEGVKMVKVACGWRHTISVSSSGGLYTYGWSKY 254

Query: 202 GRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQK-LVSEGMEKEKYMPIIWEPFL 260
           G++G+                  + +  ++   +E  Q+ L+SE                
Sbjct: 255 GQLGH-----------------GDFEDHLTPHKLEALQENLISE---------------- 281

Query: 261 VEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINF----HPVS 316
                   I+ G+ H++ L  +G L   G N +GQ+G         PV + F      V 
Sbjct: 282 --------ISGGWRHTMALTSDGKLYGWGWNKFGQVGVGDNVDHCSPVQVKFPHEQKVVH 333

Query: 317 ISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGP--DNVPLVVEGLEGE 371
           IS G  H+LA+ E ++         + SWG   + QLG       N+P ++E L  +
Sbjct: 334 ISCGWRHTLAVTERQN---------VFSWGRGTNGQLGHGESIDRNIPKMIEVLSAD 381



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 97/341 (28%), Positives = 152/341 (44%), Gaps = 74/341 (21%)

Query: 25  SGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLP-SDVTSVSAGHYHSLAVTNN- 82
           SG  V S+G G  G LG      G   D   PT +  L   +V SV+ G  H+ A + + 
Sbjct: 33  SGNVVCSWGRGEDGQLG-----HGDAEDRLSPTYLSALDGHEVVSVTCGADHTTAYSESF 87

Query: 83  GAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWV 142
             V++WG  +  +LG G      T   P+ ++ L  + +           A+  DG +  
Sbjct: 88  TQVYSWGWGDFGRLGHGNSSDLFT---PQPIKALHGLRIKQIACGDSHCLAVTMDGEVQS 144

Query: 143 WGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADG 202
           WG+++ GQLGLG    +++VP +++A  G  +  V+ G  H  A TEDG+L+GWG+   G
Sbjct: 145 WGRNQNGQLGLGT-TEDSLVPQKIQAFQGVSVKMVAAGAEHTAAVTEDGELYGWGW---G 200

Query: 203 RIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVE 262
           R GNLG                           ++  +LV E +              VE
Sbjct: 201 RYGNLGLG-------------------------DRNDRLVPEKVST------------VE 223

Query: 263 GVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFHPVSISSGLG 322
           GV++V +ACG+ H++ +  +G L + G + YGQLG      G F   +  H +       
Sbjct: 224 GVKMVKVACGWRHTISVSSSGGLYTYGWSKYGQLGH-----GDFEDHLTPHKLE------ 272

Query: 323 HSLAICEVRSSNVTGGARGIVS---------WGWNRSSQLG 354
              A+ E   S ++GG R  ++         WGWN+  Q+G
Sbjct: 273 ---ALQENLISEISGGWRHTMALTSDGKLYGWGWNKFGQVG 310


>gi|405355587|ref|ZP_11024762.1| hypothetical protein A176_0896 [Chondromyces apiculatus DSM 436]
 gi|397091294|gb|EJJ22112.1| hypothetical protein A176_0896 [Myxococcus sp. (contaminant ex DSM
           436)]
          Length = 1473

 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 114/364 (31%), Positives = 176/364 (48%), Gaps = 50/364 (13%)

Query: 24  ASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNG 83
           A GT V ++G  S G LG  T+      D  EP RV G  +DV +V+AG +HSL + ++G
Sbjct: 134 ADGT-VWTWGSNSSGQLGDGTTT-----DRAEPQRVEGF-TDVVAVAAGDFHSLVLKSDG 186

Query: 84  AVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGV-VSSAIGDDGSLWV 142
            VWAWG N   QLG+G  ++   W  PK V GL+ V    A A+G   + A+  DG++  
Sbjct: 187 TVWAWGTNFHGQLGQGHTQT-GLW--PKPVPGLEGV---VALAAGFDFTLAVHADGAVSS 240

Query: 143 WGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADG 202
           WG +  GQLGLG   T+ + P R+  L+G  I  V+ G  HA+A  +DG ++ WG ++ G
Sbjct: 241 WGANSFGQLGLGT-FTQRLSPERIPTLSG--ITSVAAGTYHAVALGKDGTVWTWGSNSSG 297

Query: 203 RIGN--------------LGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEK 248
           ++G+              +G A   + LD+      E    ++       Q  + +G   
Sbjct: 298 QLGDGTWNDRAVPAPLPGVGGARAVASLDAGSLALLEGGDVLAWGANNSGQ--LGDGDTA 355

Query: 249 EKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPV 308
           ++  P      + E   V  +  G  H+L L ++G L + G  + GQLG    +  + P 
Sbjct: 356 DRSTP----SLVPELSAVTAVVGGAQHALALRKDGTLWAWGGGLAGQLGHGGSERHVVPA 411

Query: 309 DIN--FHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQL--GRMGPDNVPLV 364
            +    +  S+++G  HSLA  E  S         + +WG N   QL  G +   +VP+ 
Sbjct: 412 TVMGLTNVTSMATGSFHSLAALEDGS---------VWAWGRNSYGQLGDGTVTERHVPVR 462

Query: 365 VEGL 368
           V GL
Sbjct: 463 VPGL 466



 Score =  108 bits (270), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 107/333 (32%), Positives = 164/333 (49%), Gaps = 42/333 (12%)

Query: 56  PTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEG 115
           P  V GL ++VTS++ G +HSLA   +G+VWAWGRN+  QLG G +  R   + P RV G
Sbjct: 410 PATVMGL-TNVTSMATGSFHSLAALEDGSVWAWGRNSYGQLGDGTVTER---HVPVRVPG 465

Query: 116 LDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIV 175
           L  V   A  A+G  S A+  DG++W WG++  GQLG G     A  P  V  L    ++
Sbjct: 466 LPSVRAVA--AAGHHSIAVAMDGTVWTWGRNAAGQLGDGTTRDRA-RPVAVSGL--TSVL 520

Query: 176 KVSFGWGHALAQTEDGKLFGWGYSADGRIGN--LGKALES------SPLDSNIDRSSESD 227
            ++ G  H LA   DG ++ WGY+A G++G+   G  L        +P+ S    +  S 
Sbjct: 521 AIAAGGSHVLALRSDGDVWAWGYNALGQLGDGTSGDKLTPVRVPGLAPIQSVAAGTYFSM 580

Query: 228 QEISSSTI----EKAQKLVSEGMEKEKYMPIIWEPFLVEGV-EVVDIACGFDHSLVLGRN 282
              +  T+    E  +  + +G   ++  P+      V+G+ ++ +I+ G  H+L +  +
Sbjct: 581 ALANDGTVWTWGEGFEGQLGDGGGVQRLSPVA-----VKGLSDIRNISVGSAHALAVRGD 635

Query: 283 GVLLSCGSNVYGQLGREKQDMGMFPVDI-NFHPVS-ISSGLGHSLAICEVRSSNVTGGAR 340
           G + + G N  GQLG         PV + N   ++ +S G  HSLA+           A 
Sbjct: 636 GTVWAWGDNNEGQLGDGSWMDRFAPVQVRNLTGITAVSGGRSHSLALH----------AD 685

Query: 341 GIV-SWGWNRSSQL--GRMGPDNVPLVVEGLEG 370
           G V +WG N   QL  G +    +P V+ GL G
Sbjct: 686 GTVRAWGSNGYGQLGDGTLTSRVLPSVIPGLSG 718



 Score =  108 bits (269), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 90/297 (30%), Positives = 141/297 (47%), Gaps = 31/297 (10%)

Query: 29   VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAW 88
            V ++G+  +G LG  T+   V      P RV GL   + +V+ G   SLA+ ++G VWAW
Sbjct: 838  VWTWGENQRGQLGDGTTSARV-----APGRVEGL-EGIVAVAGGGDTSLALRSDGTVWAW 891

Query: 89   GRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKR 148
            G N   Q+G G +E R T   P+R+E L  V V A   S  +  A+G+DG++W WG +  
Sbjct: 892  GANASGQVGDGTVEDRLT---PRRIEALSDVMVIALGESHAL--AVGEDGTVWAWGANAS 946

Query: 149  GQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLG 208
            GQLG G + T +++P+RV+ L  E +  V+ G   +LA  +DG  + WG +  G++G+  
Sbjct: 947  GQLGDGGE-TPSLLPARVKGL--EGVGSVAAGRAFSLAVRDDGTAWAWGANESGQLGDGS 1003

Query: 209  KALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGM-------------EKEKYMPII 255
                  P       +S       S+    A  L  +G              +      ++
Sbjct: 1004 NQSRRVPHRV----ASVKGLRAVSAGAHHAMALGEDGAVWAWGDNTLGQLGDGTSAFTVM 1059

Query: 256  WEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINF 312
            W   + E  +V  +A G   S+ +  +G   S GSN YGQLG  K    + P ++  
Sbjct: 1060 WPQRVAELSDVESVAAGEQFSVAVAHDGTAFSWGSNEYGQLGDGKTGPRLSPAEVKI 1116



 Score =  108 bits (269), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 103/331 (31%), Positives = 154/331 (46%), Gaps = 33/331 (9%)

Query: 56   PTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEG 115
            P RV GL   V SV+AG   SLAV ++G  WAWG N   QLG G+ +SR   +    V+G
Sbjct: 960  PARVKGL-EGVGSVAAGRAFSLAVRDDGTAWAWGANESGQLGDGSNQSRRVPHRVASVKG 1018

Query: 116  LDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIV 175
            L  V+  A  A      A+G+DG++W WG +  GQLG G      + P RV  L+   + 
Sbjct: 1019 LRAVSAGAHHA-----MALGEDGAVWAWGDNTLGQLGDGTSAFTVMWPQRVAELS--DVE 1071

Query: 176  KVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTI 235
             V+ G   ++A   DG  F WG +  G++G+       SP +  I  S         +  
Sbjct: 1072 SVAAGEQFSVAVAHDGTAFSWGSNEYGQLGDGKTGPRLSPAEVKIGGSKARTVVTVGAWG 1131

Query: 236  EKAQKLVSEGMEK-----------EKYMPIIWEPFLVEGV-EVVDIACGFDHSLVLGRNG 283
            + A  L+++G  +           +        P  + GV  V  ++ G  HSL L  +G
Sbjct: 1132 QHAVALMADGTLQAWGDNATGQLGDGTTTRRSSPGEIRGVTRVTAVSTGAWHSLALRLDG 1191

Query: 284  VLLSCGSNVYGQLGREKQDMGMFPVDIN--FHPVSISSGLGHSLAICEVRSSNVTGGARG 341
             + + G+N +GQLG         PV +      V+I++G  HS+A   VRS         
Sbjct: 1192 TVWAWGANGFGQLGDGTTTARAVPVPVQGLRDVVAIAAGGYHSVA---VRSDGT------ 1242

Query: 342  IVSWGWNRSSQLGRMGPDN--VPLVVEGLEG 370
            + +WG+N   QLG    ++  +P+ V  LEG
Sbjct: 1243 VWTWGYNTFGQLGDGTSESRALPVQVHKLEG 1273



 Score =  108 bits (269), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 103/336 (30%), Positives = 155/336 (46%), Gaps = 71/336 (21%)

Query: 31   SFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGR 90
            ++GD + G LG  T+          P  + G+ + VT+VS G +HSLA+  +G VWAWG 
Sbjct: 1145 AWGDNATGQLGDGTTTR-----RSSPGEIRGV-TRVTAVSTGAWHSLALRLDGTVWAWGA 1198

Query: 91   NNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQ 150
            N   QLG G   +RA    P  V+GL   +V A  A G  S A+  DG++W WG +  GQ
Sbjct: 1199 NGFGQLGDGTTTARAV---PVPVQGLR--DVVAIAAGGYHSVAVRSDGTVWTWGYNTFGQ 1253

Query: 151  LGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKA 210
            LG G   + A+ P +V  L  E +  V+ G  H+LA   DG + GWG++A G++G     
Sbjct: 1254 LGDGTSESRAL-PVQVHKL--EGVQAVTGGDHHSLALHADGTVSGWGHNASGQLG----- 1305

Query: 211  LESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIA 270
                                             +G   ++Y P+  +   V+G  + ++ 
Sbjct: 1306 ---------------------------------DGSRTDRYTPVRLKD--VDG--LTEVR 1328

Query: 271  CGFDHSLVLGRNGVLLSCGSNVYGQLGR--EKQDMGMFPVDINFHPVSISSGLG--HSLA 326
             G  H++ LG++G + + G N +GQLG       M + P  ++  P + + G G  HS A
Sbjct: 1329 AGAAHTVALGKDGTVWTWGDNAHGQLGDGVTGPRMRLVPKPVSGLPAATAIGAGAWHSFA 1388

Query: 327  ICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPDNVP 362
                     +G   G  +WG N   QLG    DN P
Sbjct: 1389 ---------SGPEEGAFTWGRNSHGQLGV--GDNAP 1413



 Score =  102 bits (253), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 95/317 (29%), Positives = 150/317 (47%), Gaps = 40/317 (12%)

Query: 68   SVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFAS 127
            SV++G  HSL +  +G VW WG N   QLG G   +R     P RVEGL+   + A    
Sbjct: 821  SVASGGQHSLVLACDGTVWTWGENQRGQLGDGTTSARVA---PGRVEGLE--GIVAVAGG 875

Query: 128  GVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQ 187
            G  S A+  DG++W WG +  GQ+G G  + + + P R+EAL+   ++ ++ G  HALA 
Sbjct: 876  GDTSLALRSDGTVWAWGANASGQVGDGT-VEDRLTPRRIEALS--DVMVIALGESHALAV 932

Query: 188  TEDGKLFGWGYSADGRIGNLG----------KALE---SSPLDSNIDRSSESDQEISSST 234
             EDG ++ WG +A G++G+ G          K LE   S         +   D    +  
Sbjct: 933  GEDGTVWAWGANASGQLGDGGETPSLLPARVKGLEGVGSVAAGRAFSLAVRDDGTAWAWG 992

Query: 235  IEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYG 294
              ++ +L  +G  + + +P       V+G+  V  + G  H++ LG +G + + G N  G
Sbjct: 993  ANESGQL-GDGSNQSRRVPH--RVASVKGLRAV--SAGAHHAMALGEDGAVWAWGDNTLG 1047

Query: 295  QLGREKQDMG-MFPVDI-NFHPV-SISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSS 351
            QLG        M+P  +     V S+++G   S+A+    ++          SWG N   
Sbjct: 1048 QLGDGTSAFTVMWPQRVAELSDVESVAAGEQFSVAVAHDGTA---------FSWGSNEYG 1098

Query: 352  QL--GRMGPDNVPLVVE 366
            QL  G+ GP   P  V+
Sbjct: 1099 QLGDGKTGPRLSPAEVK 1115



 Score =  101 bits (251), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 110/361 (30%), Positives = 164/361 (45%), Gaps = 51/361 (14%)

Query: 28  AVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWA 87
           AV S+G  S G LGL T           P R+P L S +TSV+AG YH++A+  +G VW 
Sbjct: 237 AVSSWGANSFGQLGLGTFT-----QRLSPERIPTL-SGITSVAAGTYHAVALGKDGTVWT 290

Query: 88  WGRNNEVQLGRGALESRATWND---PKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWG 144
           WG N+  QLG G      TWND   P  + G+      A+  +G  S A+ + G +  WG
Sbjct: 291 WGSNSSGQLGDG------TWNDRAVPAPLPGVGGARAVASLDAG--SLALLEGGDVLAWG 342

Query: 145 KSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRI 204
            +  GQLG G D  +   PS V  L+   +  V  G  HALA  +DG L+ WG    G++
Sbjct: 343 ANNSGQLGDG-DTADRSTPSLVPELS--AVTAVVGGAQHALALRKDGTLWAWGGGLAGQL 399

Query: 205 GNLGKALESSP--------LDSNIDRSSESDQEISSSTI----EKAQKLVSEGMEKEKYM 252
           G+ G      P        + S    S  S   +   ++      +   + +G   E+++
Sbjct: 400 GHGGSERHVVPATVMGLTNVTSMATGSFHSLAALEDGSVWAWGRNSYGQLGDGTVTERHV 459

Query: 253 PIIWEPFLVEGVEVVD-IACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDIN 311
           P+      V G+  V  +A    HS+ +  +G + + G N  GQLG         PV ++
Sbjct: 460 PV-----RVPGLPSVRAVAAAGHHSIAVAMDGTVWTWGRNAAGQLGDGTTRDRARPVAVS 514

Query: 312 --FHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQL--GRMGPDNVPLVVEG 367
                ++I++G  H LA+   RS         + +WG+N   QL  G  G    P+ V G
Sbjct: 515 GLTSVLAIAAGGSHVLAL---RSDG------DVWAWGYNALGQLGDGTSGDKLTPVRVPG 565

Query: 368 L 368
           L
Sbjct: 566 L 566



 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 110/356 (30%), Positives = 157/356 (44%), Gaps = 73/356 (20%)

Query: 21  MRSASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVT 80
           M  A+   V ++G+G +G LG      G G     P  V GL SD+ ++S G  H+LAV 
Sbjct: 580 MALANDGTVWTWGEGFEGQLG-----DGGGVQRLSPVAVKGL-SDIRNISVGSAHALAVR 633

Query: 81  NNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSL 140
            +G VWAWG NNE QLG G+   R     P +V  L  +   +   S   S A+  DG++
Sbjct: 634 GDGTVWAWGDNNEGQLGDGSWMDRFA---PVQVRNLTGITAVSGGRS--HSLALHADGTV 688

Query: 141 WVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSA 200
             WG +  GQLG G  +T  ++PS +  L+G  I  +  G  H LA   D  L GWGY+ 
Sbjct: 689 RAWGSNGYGQLGDGT-LTSRVLPSVIPGLSG--IQALHPGHLHVLALHADKTLRGWGYNR 745

Query: 201 DGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFL 260
            G++G LG A  S+                                           P  
Sbjct: 746 FGQLG-LGAAGWSA------------------------------------------RPVQ 762

Query: 261 VEGVEVVD-IACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFHPV--SI 317
           V G+  V+ +A G  H+L++  +G +++ G+N  GQLG      G   V +       S+
Sbjct: 763 VRGIGRVERLAAGRAHALLVRADGSVVAWGANASGQLGDGGTTHGARAVTVRGVSCARSV 822

Query: 318 SSGLGHSLAI-CEVRSSNVTGGARGIVSWGWNRSSQL--GRMGPDNVPLVVEGLEG 370
           +SG  HSL + C+            + +WG N+  QL  G       P  VEGLEG
Sbjct: 823 ASGGQHSLVLACDGT----------VWTWGENQRGQLGDGTTSARVAPGRVEGLEG 868



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 99/349 (28%), Positives = 151/349 (43%), Gaps = 77/349 (22%)

Query: 9    HNHVNVLTSRIFMRSASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTS 68
            H HV  L +   +R         +G    G LGL     G  G +  P +V G+   V  
Sbjct: 726  HLHVLALHADKTLRG--------WGYNRFGQLGL-----GAAGWSARPVQVRGI-GRVER 771

Query: 69   VSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASG 128
            ++AG  H+L V  +G+V AWG N   QLG G     A      R   +  V+   + ASG
Sbjct: 772  LAAGRAHALLVRADGSVVAWGANASGQLGDGGTTHGA------RAVTVRGVSCARSVASG 825

Query: 129  VVSS-AIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQ 187
               S  +  DG++W WG+++RGQLG G   +  + P RVE L  E IV V+ G   +LA 
Sbjct: 826  GQHSLVLACDGTVWTWGENQRGQLGDGT-TSARVAPGRVEGL--EGIVAVAGGGDTSLAL 882

Query: 188  TEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGME 247
              DG ++ WG +A G++G                                      +G  
Sbjct: 883  RSDGTVWAWGANASGQVG--------------------------------------DGTV 904

Query: 248  KEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFP 307
            +++  P   E       +V+ IA G  H+L +G +G + + G+N  GQLG   +   + P
Sbjct: 905  EDRLTPRRIEAL----SDVMVIALGESHALAVGEDGTVWAWGANASGQLGDGGETPSLLP 960

Query: 308  VDIN-FHPV-SISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLG 354
              +     V S+++G   SLA+ +  ++          +WG N S QLG
Sbjct: 961  ARVKGLEGVGSVAAGRAFSLAVRDDGTA---------WAWGANESGQLG 1000



 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 87/296 (29%), Positives = 131/296 (44%), Gaps = 64/296 (21%)

Query: 63  PSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVC 122
           P     ++AG  HSL +T  GAVWAWG N+  QL  G  ++      P R+  L+  ++ 
Sbjct: 65  PLSPMRIAAGAQHSLFLTPTGAVWAWGGNSAGQL--GGADTSFQRLSPARLPVLE--DIV 120

Query: 123 AAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWG 182
           +  +    S A+G DG++W WG +  GQLG G   T+   P RVE      +V V+ G  
Sbjct: 121 SVVSGDAHSLALGADGTVWTWGSNSSGQLGDGT-TTDRAEPQRVEGF--TDVVAVAAGDF 177

Query: 183 HALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLV 242
           H+L    DG ++ WG +  G++G                                     
Sbjct: 178 HSLVLKSDGTVWAWGTNFHGQLG------------------------------------- 200

Query: 243 SEGMEKEKYMPIIWEPFLVEGVE-VVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQ 301
            +G  +    P   +P  V G+E VV +A GFD +L +  +G + S G+N +GQLG    
Sbjct: 201 -QGHTQTGLWP---KP--VPGLEGVVALAAGFDFTLAVHADGAVSSWGANSFGQLGLGTF 254

Query: 302 DMGMFPVDINFHP--VSISSGLGHSLAICEVRSSNVTGGARGIV-SWGWNRSSQLG 354
              + P  I       S+++G  H++A+          G  G V +WG N S QLG
Sbjct: 255 TQRLSPERIPTLSGITSVAAGTYHAVAL----------GKDGTVWTWGSNSSGQLG 300



 Score = 70.5 bits (171), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 55/154 (35%), Positives = 78/154 (50%), Gaps = 7/154 (4%)

Query: 52   DAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPK 111
            D Y P R+  +   +T V AG  H++A+  +G VW WG N   QLG G    R     PK
Sbjct: 1311 DRYTPVRLKDV-DGLTEVRAGAAHTVALGKDGTVWTWGDNAHGQLGDGVTGPRMRLV-PK 1368

Query: 112  RVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAG 171
             V GL       A A    S A G +   + WG++  GQLG+G +   A  P R++ L+G
Sbjct: 1369 PVSGLPAATAIGAGA--WHSFASGPEEGAFTWGRNSHGQLGVGDNAPRA-EPQRMKLLSG 1425

Query: 172  EKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIG 205
             K+  ++ G   +LA T++G L  WG S  G +G
Sbjct: 1426 LKV--IAGGADTSLAMTQEGVLMSWGSSLHGTLG 1457



 Score = 54.3 bits (129), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 51/140 (36%), Positives = 69/140 (49%), Gaps = 14/140 (10%)

Query: 29   VVSFGDGSQGALGLPTSLTGVGGDAYE--PTRVPGLPSDVTSVSAGHYHSLAVTNNGAVW 86
            V ++GD + G LG      GV G      P  V GLP+  T++ AG +HS A       +
Sbjct: 1343 VWTWGDNAHGQLG-----DGVTGPRMRLVPKPVSGLPA-ATAIGAGAWHSFASGPEEGAF 1396

Query: 87   AWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKS 146
             WGRN+  QLG G    RA   +P+R++ L  + V A  A    S A+  +G L  WG S
Sbjct: 1397 TWGRNSHGQLGVGDNAPRA---EPQRMKLLSGLKVIAGGAD--TSLAMTQEGVLMSWGSS 1451

Query: 147  KRGQLGLGKDITEAIVPSRV 166
              G LGLG  + +   P RV
Sbjct: 1452 LHGTLGLGV-LGQRASPGRV 1470



 Score = 39.7 bits (91), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 37/101 (36%), Positives = 47/101 (46%), Gaps = 18/101 (17%)

Query: 260 LVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLG-----REKQDMGMFPVDINFHP 314
           L E +  + IA G  HSL L   G + + G N  GQLG      ++      PV  +   
Sbjct: 62  LAEPLSPMRIAAGAQHSLFLTPTGAVWAWGGNSAGQLGGADTSFQRLSPARLPVLEDI-- 119

Query: 315 VSISSGLGHSLAICEVRSSNVTGGARGIV-SWGWNRSSQLG 354
           VS+ SG  HSLA+          GA G V +WG N S QLG
Sbjct: 120 VSVVSGDAHSLAL----------GADGTVWTWGSNSSGQLG 150


>gi|226507778|ref|NP_001140994.1| uncharacterized protein LOC100273073 [Zea mays]
 gi|194702086|gb|ACF85127.1| unknown [Zea mays]
 gi|413922319|gb|AFW62251.1| putative regulator of chromosome condensation (RCC1) family protein
           isoform 1 [Zea mays]
 gi|413922320|gb|AFW62252.1| putative regulator of chromosome condensation (RCC1) family protein
           isoform 2 [Zea mays]
          Length = 389

 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 65/166 (39%), Positives = 97/166 (58%), Gaps = 4/166 (2%)

Query: 56  PTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEG 115
           P RV GL   V  ++ G +H+LA+T +  +WAWG N   QLG G  + R   + P RVEG
Sbjct: 193 PVRVQGL-EKVRVIAVGAFHNLALTEDVILWAWGNNEYGQLGTGDTQPR---SQPIRVEG 248

Query: 116 LDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIV 175
           L  +++    A G  S+A+  DG ++ WG+ + G+LG G D +  +VP +VE LAGE IV
Sbjct: 249 LSDLSLVDIAAGGWHSTALTIDGEVYAWGRGEHGRLGFGDDKSSHMVPLKVELLAGEDIV 308

Query: 176 KVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNID 221
           +VS G  H++A   DG++F +G    GR+G   K     P++  I+
Sbjct: 309 QVSCGGTHSVALARDGRMFSYGRGDHGRLGYGRKVTTGHPMELPIN 354



 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 96/307 (31%), Positives = 135/307 (43%), Gaps = 29/307 (9%)

Query: 84  AVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVW 143
           AV AWG   + QLG G  E +   + P  VE L    V A  A    S AI DDG L+ W
Sbjct: 9   AVLAWGSGEDGQLGMGGNEEK---DWPHFVEALGPYAVTAVVAGSRNSLAICDDGRLFTW 65

Query: 144 GKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGR 203
           G ++RG LG   +      P  V+ALAG KIV+ + G  H LA  + G+ + WG +  G+
Sbjct: 66  GWNQRGTLGHPPETKTESSPGPVDALAGFKIVQAAIGGWHCLAVDDKGRAYAWGGNEYGQ 125

Query: 204 IGNLGKALE--SSPLDSNIDRSSESDQEISSSTIEKAQK----LVSEGMEKEKYMPI--- 254
            G   +  E  +  L  +I        ++    +         L  EG       P    
Sbjct: 126 CGEEPERKEDGTRALRRDIPIPQRCALKLKVRQVAAGGTHSVVLTQEGHVWTWGQPWPPG 185

Query: 255 ----IWEPFLVEGVEVVD-IACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVD 309
               I  P  V+G+E V  IA G  H+L L  + +L + G+N YGQLG         P+ 
Sbjct: 186 DIKQISTPVRVQGLEKVRVIAVGAFHNLALTEDVILWAWGNNEYGQLGTGDTQPRSQPIR 245

Query: 310 I----NFHPVSISSGLGHSLAICEVRSSNVTG-GARGIVSWGWNRSSQLGRMGPDNVPLV 364
           +    +   V I++G  HS A+         G G  G + +G ++SS +       VPL 
Sbjct: 246 VEGLSDLSLVDIAAGGWHSTALTIDGEVYAWGRGEHGRLGFGDDKSSHM-------VPLK 298

Query: 365 VEGLEGE 371
           VE L GE
Sbjct: 299 VELLAGE 305



 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 102/389 (26%), Positives = 164/389 (42%), Gaps = 99/389 (25%)

Query: 27  TAVVSFGDGSQGALGLPTSLTGVGGDAYE--PTRVPGL-PSDVTSVSAGHYHSLAVTNNG 83
           TAV+++G G  G LG+       GG+  +  P  V  L P  VT+V AG  +SLA+ ++G
Sbjct: 8   TAVLAWGSGEDGQLGM-------GGNEEKDWPHFVEALGPYAVTAVVAGSRNSLAICDDG 60

Query: 84  AVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVW 143
            ++ WG N    LG    E++ T + P  V+ L    +  A   G    A+ D G  + W
Sbjct: 61  RLFTWGWNQRGTLGH-PPETK-TESSPGPVDALAGFKIVQAAIGGWHCLAVDDKGRAYAW 118

Query: 144 GKSKRGQLG------------LGKDI-------------------TEAIV---------- 162
           G ++ GQ G            L +DI                   T ++V          
Sbjct: 119 GGNEYGQCGEEPERKEDGTRALRRDIPIPQRCALKLKVRQVAAGGTHSVVLTQEGHVWTW 178

Query: 163 --------------PSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLG 208
                         P RV+ L  EK+  ++ G  H LA TED  L+ WG +  G++G   
Sbjct: 179 GQPWPPGDIKQISTPVRVQGL--EKVRVIAVGAFHNLALTEDVILWAWGNNEYGQLGTGD 236

Query: 209 KALESSPL------DSNIDRSSESDQEISSSTIE--------KAQKLVSEGMEKEKYM-P 253
               S P+      D ++   +      ++ TI+             +  G +K  +M P
Sbjct: 237 TQPRSQPIRVEGLSDLSLVDIAAGGWHSTALTIDGEVYAWGRGEHGRLGFGDDKSSHMVP 296

Query: 254 IIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVD--IN 311
           +  E  L+ G ++V ++CG  HS+ L R+G + S G   +G+LG  ++     P++  IN
Sbjct: 297 LKVE--LLAGEDIVQVSCGGTHSVALARDGRMFSYGRGDHGRLGYGRKVTTGHPMELPIN 354

Query: 312 FHPVS-----------ISSGLGHSLAICE 329
             P+S           ++ G  H+LAI E
Sbjct: 355 LPPLSSSRDGRWQAKYVACGGRHTLAIAE 383


>gi|310819121|ref|YP_003951479.1| regulator of chromosome condensation-like protein [Stigmatella
           aurantiaca DW4/3-1]
 gi|309392193|gb|ADO69652.1| regulator of chromosome condensation-like protein [Stigmatella
           aurantiaca DW4/3-1]
          Length = 732

 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 110/333 (33%), Positives = 166/333 (49%), Gaps = 42/333 (12%)

Query: 56  PTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEG 115
           P +V GL S V +V+AG  HSLAV ++G VWAWGRN++ QLG G   +R T   P +V G
Sbjct: 225 PVQVAGL-SGVVAVAAGSSHSLAVRSDGTVWAWGRNSDGQLGDGTTSARLT---PVQVTG 280

Query: 116 LDQVNVCAAFASGVVSS-AIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKI 174
           L       A A+G+  S A+  DG++W WG++ RGQLG G  +T ++ P  V+A+   + 
Sbjct: 281 LSG---GVAVAAGMFHSLAVRSDGTVWAWGQNTRGQLGDGS-MTASLTP--VQAIGLSEG 334

Query: 175 VKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSP-----LDSNIDRSSESDQE 229
             V+ G  H+L    DG ++ WG + +G+ G+      ++P     L      ++     
Sbjct: 335 EAVAAGETHSLVARSDGTVWAWGNNIEGQRGDGSAKTSTAPVQVTALSGGFTVAAGKAHA 394

Query: 230 I---SSSTIEK-AQKL---VSEGMEKEKYMPIIWEPFLVEGVE-VVDIACGFDHSLVLGR 281
           +   S  T+    Q L   + +G   ++  P+      V G+   V +A G DHSL L  
Sbjct: 395 LAVRSDGTVWAWGQNLFGQLGDGTRMQRTAPV-----QVTGLSGGVAVAAGDDHSLGLCL 449

Query: 282 NGVLLSCGSNVYGQLGREKQDMGMFPVDINFHP--VSISSGLGHSLAICEVRSSNVTGGA 339
           +G + + G N  GQLG         PV +      V++++G  HSLA+    SS+ T   
Sbjct: 450 DGTVWAWGQNTSGQLGDGTTAQRPAPVQVTELSGVVAVAAGTSHSLAV----SSDGT--- 502

Query: 340 RGIVSWGWNRSSQL--GRMGPDNVPLVVEGLEG 370
             + +WG N S QL  G       P+ V GL G
Sbjct: 503 --VWAWGSNASGQLGDGTTRARLTPVQVAGLSG 533



 Score =  108 bits (269), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 104/333 (31%), Positives = 161/333 (48%), Gaps = 42/333 (12%)

Query: 56  PTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEG 115
           P +V GL   V +V+AG +HSLAV ++G VWAWG+N   QLG G++ +  T   P +  G
Sbjct: 275 PVQVTGLSGGV-AVAAGMFHSLAVRSDGTVWAWGQNTRGQLGDGSMTASLT---PVQAIG 330

Query: 116 LDQVNVCAAFASGVVSSAIG-DDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKI 174
           L +     A A+G   S +   DG++W WG +  GQ G G   T +  P +V AL+G   
Sbjct: 331 LSE---GEAVAAGETHSLVARSDGTVWAWGNNIEGQRGDGSAKT-STAPVQVTALSGG-- 384

Query: 175 VKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSP-----LDSNIDRSSESDQE 229
             V+ G  HALA   DG ++ WG +  G++G+  +   ++P     L   +  ++  D  
Sbjct: 385 FTVAAGKAHALAVRSDGTVWAWGQNLFGQLGDGTRMQRTAPVQVTGLSGGVAVAAGDDHS 444

Query: 230 IS---SSTI----EKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRN 282
           +      T+    +     + +G   ++  P+     + E   VV +A G  HSL +  +
Sbjct: 445 LGLCLDGTVWAWGQNTSGQLGDGTTAQRPAPVQ----VTELSGVVAVAAGTSHSLAVSSD 500

Query: 283 GVLLSCGSNVYGQLGREKQDMGMFPVDINFHP--VSISSGLGHSLAICEVRSSNVTGGAR 340
           G + + GSN  GQLG       + PV +      V++++G  HSLA   VRS        
Sbjct: 501 GTVWAWGSNASGQLGDGTTRARLTPVQVAGLSGVVAVAAGYFHSLA---VRSDGT----- 552

Query: 341 GIVSWGWNRSSQLGRMGPDN---VPLVVEGLEG 370
            + +WG N   QLG  G +     P+ V GL G
Sbjct: 553 -VWAWGNNSFFQLGD-GTNTQRPTPVRVPGLSG 583



 Score =  104 bits (259), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 99/307 (32%), Positives = 144/307 (46%), Gaps = 66/307 (21%)

Query: 56  PTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEG 115
           P +V  L S V +V+AG  HSLAV+++G VWAWG N   QLG G   +R T   P +V G
Sbjct: 475 PVQVTEL-SGVVAVAAGTSHSLAVSSDGTVWAWGSNASGQLGDGTTRARLT---PVQVAG 530

Query: 116 LDQVNVCAAFASGVVSS-AIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKI 174
           L  V    A A+G   S A+  DG++W WG +   QLG G + T+   P RV  L+G   
Sbjct: 531 LSGV---VAVAAGYFHSLAVRSDGTVWAWGNNSFFQLGDGTN-TQRPTPVRVPGLSGG-- 584

Query: 175 VKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSST 234
           V  + G+ H+L    DG ++GWG +A G++GN                            
Sbjct: 585 VAAAAGYFHSLVLRSDGTVWGWGNNAYGQLGN---------------------------- 616

Query: 235 IEKAQKLVSEGMEKEKYMPIIWEPFLVEGVE-VVDIACGFDHSLVLGRNGVLLSCGSNVY 293
                     G     + P+      V G+   V +A G   SL +  +G + + G N+Y
Sbjct: 617 ----------GTANASFSPV-----QVTGLSGGVAVAAGDFQSLAVRSDGTVRAWGDNIY 661

Query: 294 GQLGREKQDMGMFPVDIN--FHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSS 351
           GQLG       + PV +N     +++++G G SLA+        +GG   + +WG+N   
Sbjct: 662 GQLGDGTVTTRLAPVGVNGLSGGMAVAAGNGFSLAVH-------SGGM--LHAWGYNTDG 712

Query: 352 QLGRMGP 358
           QLG  GP
Sbjct: 713 QLGHGGP 719



 Score =  104 bits (259), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 103/337 (30%), Positives = 154/337 (45%), Gaps = 48/337 (14%)

Query: 55  EPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVE 114
            P +V GL S+  +V+AG  HSL V ++G VWAWG N++ QLG G    R   + P +V 
Sbjct: 124 RPVQVTGL-SEAEAVAAGDGHSLVVRSDGTVWAWGWNSDGQLGDGTTRER---HVPVQVA 179

Query: 115 GLDQVNVCAAFASGVVSSAIGD--------DGSLWVWGKSKRGQLGLGKDITEAIVPSRV 166
           GL          SG V  A GD        DG++W WG++  GQLG G  +  +  P +V
Sbjct: 180 GL----------SGGVKVAAGDGHSLAVCLDGTVWAWGRNDSGQLGDGTTVQRS-APVQV 228

Query: 167 EALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSN------- 219
             L+G  +V V+ G  H+LA   DG ++ WG ++DG++G+   +   +P+          
Sbjct: 229 AGLSG--VVAVAAGSSHSLAVRSDGTVWAWGRNSDGQLGDGTTSARLTPVQVTGLSGGVA 286

Query: 220 IDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGV-EVVDIACGFDHSLV 278
           +         + S     A    + G   +  M     P    G+ E   +A G  HSLV
Sbjct: 287 VAAGMFHSLAVRSDGTVWAWGQNTRGQLGDGSMTASLTPVQAIGLSEGEAVAAGETHSLV 346

Query: 279 LGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFHP--VSISSGLGHSLAICEVRSSNVT 336
              +G + + G+N+ GQ G         PV +       ++++G  H+LA   VRS    
Sbjct: 347 ARSDGTVWAWGNNIEGQRGDGSAKTSTAPVQVTALSGGFTVAAGKAHALA---VRSDGT- 402

Query: 337 GGARGIVSWGWNRSSQLG---RMGPDNVPLVVEGLEG 370
                + +WG N   QLG   RM     P+ V GL G
Sbjct: 403 -----VWAWGQNLFGQLGDGTRM-QRTAPVQVTGLSG 433



 Score =  102 bits (253), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 107/340 (31%), Positives = 156/340 (45%), Gaps = 56/340 (16%)

Query: 56  PTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEG 115
           P +V  L    T V+AG  H+LAV ++G VWAWG+N   QLG G    R     P +V G
Sbjct: 375 PVQVTALSGGFT-VAAGKAHALAVRSDGTVWAWGQNLFGQLGDGTRMQRTA---PVQVTG 430

Query: 116 LDQVNVCAAFASGVVSSAIGD--------DGSLWVWGKSKRGQLGLGKDITEAIVPSRVE 167
           L          SG V+ A GD        DG++W WG++  GQLG   D T A  P+ V+
Sbjct: 431 L----------SGGVAVAAGDDHSLGLCLDGTVWAWGQNTSGQLG---DGTTAQRPAPVQ 477

Query: 168 ALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLD----SNI--- 220
                 +V V+ G  H+LA + DG ++ WG +A G++G+       +P+     S +   
Sbjct: 478 VTELSGVVAVAAGTSHSLAVSSDGTVWAWGSNASGQLGDGTTRARLTPVQVAGLSGVVAV 537

Query: 221 ------DRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFD 274
                   +  SD  + +       +L  +G   ++  P+   P L  GV     A G+ 
Sbjct: 538 AAGYFHSLAVRSDGTVWAWGNNSFFQL-GDGTNTQRPTPVR-VPGLSGGVAA---AAGYF 592

Query: 275 HSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDIN--FHPVSISSGLGHSLAICEVRS 332
           HSLVL  +G +   G+N YGQLG    +    PV +      V++++G   SLA   VRS
Sbjct: 593 HSLVLRSDGTVWGWGNNAYGQLGNGTANASFSPVQVTGLSGGVAVAAGDFQSLA---VRS 649

Query: 333 SNVTGGARGIVSWGWNRSSQL--GRMGPDNVPLVVEGLEG 370
                    + +WG N   QL  G +     P+ V GL G
Sbjct: 650 DGT------VRAWGDNIYGQLGDGTVTTRLAPVGVNGLSG 683



 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 102/323 (31%), Positives = 146/323 (45%), Gaps = 67/323 (20%)

Query: 56  PTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEG 115
           P +V GL SD   V+AG  HSLA+ ++G  WAWG N   +LG G    R     P +V G
Sbjct: 75  PAQVVGL-SDAVLVAAGSSHSLAIRSDGTAWAWGHNGSGELGDGTTFRR---TRPVQVTG 130

Query: 116 LDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIV 175
           L +    AA      S  +  DG++W WG +  GQLG G    E  VP +V  L+G   V
Sbjct: 131 LSEAEAVAAGDG--HSLVVRSDGTVWAWGWNSDGQLGDGT-TRERHVPVQVAGLSGG--V 185

Query: 176 KVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTI 235
           KV+ G GH+LA   DG ++ WG +  G++G+                          +T+
Sbjct: 186 KVAAGDGHSLAVCLDGTVWAWGRNDSGQLGD-------------------------GTTV 220

Query: 236 EKAQKLVSEGMEKEKYMPIIWEPFLVEGVE-VVDIACGFDHSLVLGRNGVLLSCGSNVYG 294
           +++                   P  V G+  VV +A G  HSL +  +G + + G N  G
Sbjct: 221 QRS------------------APVQVAGLSGVVAVAAGSSHSLAVRSDGTVWAWGRNSDG 262

Query: 295 QLGREKQDMGMFPVDIN--FHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQ 352
           QLG       + PV +      V++++G+ HSLA   VRS         + +WG N   Q
Sbjct: 263 QLGDGTTSARLTPVQVTGLSGGVAVAAGMFHSLA---VRSDGT------VWAWGQNTRGQ 313

Query: 353 L--GRMGPDNVPLVVEGL-EGES 372
           L  G M     P+   GL EGE+
Sbjct: 314 LGDGSMTASLTPVQAIGLSEGEA 336



 Score = 80.5 bits (197), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 76/206 (36%), Positives = 105/206 (50%), Gaps = 19/206 (9%)

Query: 16  TSRIFMRSASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYH 75
           TS     S+ GT V ++G  + G LG  T+          P +V GL S V +V+AG++H
Sbjct: 491 TSHSLAVSSDGT-VWAWGSNASGQLGDGTTRA-----RLTPVQVAGL-SGVVAVAAGYFH 543

Query: 76  SLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAA--FASGVVSSA 133
           SLAV ++G VWAWG N+  QLG G    R T   P RV GL      AA  F S V+ S 
Sbjct: 544 SLAVRSDGTVWAWGNNSFFQLGDGTNTQRPT---PVRVPGLSGGVAAAAGYFHSLVLRS- 599

Query: 134 IGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKL 193
              DG++W WG +  GQLG G     +  P +V  L+G   V V+ G   +LA   DG +
Sbjct: 600 ---DGTVWGWGNNAYGQLGNGT-ANASFSPVQVTGLSGG--VAVAAGDFQSLAVRSDGTV 653

Query: 194 FGWGYSADGRIGNLGKALESSPLDSN 219
             WG +  G++G+       +P+  N
Sbjct: 654 RAWGDNIYGQLGDGTVTTRLAPVGVN 679



 Score = 78.2 bits (191), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 58/156 (37%), Positives = 84/156 (53%), Gaps = 9/156 (5%)

Query: 56  PTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEG 115
           P RVPGL   V + +AG++HSL + ++G VW WG N   QLG G   +  +   P +V G
Sbjct: 575 PVRVPGLSGGV-AAAAGYFHSLVLRSDGTVWGWGNNAYGQLGNGTANASFS---PVQVTG 630

Query: 116 LDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIV 175
           L      A  A    S A+  DG++  WG +  GQLG G  +T  + P  V  L+G   +
Sbjct: 631 LS--GGVAVAAGDFQSLAVRSDGTVRAWGDNIYGQLGDGT-VTTRLAPVGVNGLSGG--M 685

Query: 176 KVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKAL 211
            V+ G G +LA    G L  WGY+ DG++G+ G ++
Sbjct: 686 AVAAGNGFSLAVHSGGMLHAWGYNTDGQLGHGGPSV 721


>gi|384249755|gb|EIE23236.1| UVB-resistance 8 [Coccomyxa subellipsoidea C-169]
          Length = 434

 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 102/332 (30%), Positives = 158/332 (47%), Gaps = 52/332 (15%)

Query: 66  VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAF 125
           VTSVS G  HSLA+ +NG   +WGR  + QLG G  E R     P+ +  L Q + C+A 
Sbjct: 16  VTSVSCGSSHSLALLSNGIALSWGRGEDGQLGHGDAEER---KKPRAIFHLMQAS-CSAV 71

Query: 126 ASGV-VSSAIGDD-GSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGH 183
            SG   S A+      ++ WG    G+LG G D  +  +P  + ALAG  IVKV+ G  H
Sbjct: 72  CSGAEYSVALSQPRNEVYSWGWGDFGRLGHG-DCNDVFIPQPIRALAGRNIVKVACGDTH 130

Query: 184 ALAQTEDGKLFGWGYSADGR--IGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKL 241
            LA T+ G+LF +G + +G+  +G    A+   P++      S   QE++S        L
Sbjct: 131 TLAVTDTGELFSFGRNQNGQLGLGTTSDAILPQPVE------SLRGQEVTSIACGGEHSL 184

Query: 242 VSE------------------GMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNG 283
            +                   G  +++++P   +   +EGV+V  +ACG+ HS+     G
Sbjct: 185 AATSAGDVFAWGWGRYGNLGVGPPEDRHLPS--QVHGLEGVKVTSVACGWRHSIAADETG 242

Query: 284 VLLSCGSNVYGQLGREKQDMGMFPVDI----NFHPVSISSGLGHSLAICEVRSSNVTGGA 339
            + + G + YGQLG       + P  +    +   V I+ G  H+ A  +         +
Sbjct: 243 AVYTFGWSKYGQLGHGDCIDQLVPKAVESLKDSRIVLIAGGWRHTSAADD---------S 293

Query: 340 RGIVSWGWNRSSQLGRMGPD---NVPLVVEGL 368
             + SWGWN+  QLG +G +   N P+ V+GL
Sbjct: 294 GKLYSWGWNKFGQLG-IGSNTDSNAPVPVQGL 324



 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 88/286 (30%), Positives = 128/286 (44%), Gaps = 56/286 (19%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLP-SDVTSVSAGHYHSLAVTNNGAVWA 87
           + SFG    G LGL     G   DA  P  V  L   +VTS++ G  HSLA T+ G V+A
Sbjct: 140 LFSFGRNQNGQLGL-----GTTSDAILPQPVESLRGQEVTSIACGGEHSLAATSAGDVFA 194

Query: 88  WGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSK 147
           WG      LG G  E R   + P +V GL+ V V +       S A  + G+++ +G SK
Sbjct: 195 WGWGRYGNLGVGPPEDR---HLPSQVHGLEGVKVTSVACGWRHSIAADETGAVYTFGWSK 251

Query: 148 RGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNL 207
            GQLG G D  + +VP  VE+L   +IV ++ GW H  A  + GKL+ WG++  G++G  
Sbjct: 252 YGQLGHG-DCIDQLVPKAVESLKDSRIVLIAGGWRHTSAADDSGKLYSWGWNKFGQLG-- 308

Query: 208 GKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVE-- 265
                   + SN D ++                                 P  V+G+   
Sbjct: 309 --------IGSNTDSNA---------------------------------PVPVQGLNTS 327

Query: 266 -VVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDI 310
            V  ++CG+ H+  +   G + S G  V GQLG  +      PV +
Sbjct: 328 PVKLLSCGWRHTFAVTEAGDVFSWGRGVNGQLGHNEPKDTNAPVRL 373



 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 95/338 (28%), Positives = 144/338 (42%), Gaps = 63/338 (18%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLP-SDVTSVSAGHYHSLAVTNNGAVWA 87
           V S+G G  G LG      G   D + P  +  L   ++  V+ G  H+LAVT+ G +++
Sbjct: 88  VYSWGWGDFGRLG-----HGDCNDVFIPQPIRALAGRNIVKVACGDTHTLAVTDTGELFS 142

Query: 88  WGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSK 147
           +GRN   QLG G          P+ VE L    V +    G  S A    G ++ WG  +
Sbjct: 143 FGRNQNGQLGLGTTSDAIL---PQPVESLRGQEVTSIACGGEHSLAATSAGDVFAWGWGR 199

Query: 148 RGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNL 207
            G LG+G    +  +PS+V  L G K+  V+ GW H++A  E G ++ +G+S  G++G+ 
Sbjct: 200 YGNLGVGPP-EDRHLPSQVHGLEGVKVTSVACGWRHSIAADETGAVYTFGWSKYGQLGH- 257

Query: 208 GKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVV 267
           G  ++                           +LV + +E  K               +V
Sbjct: 258 GDCID---------------------------QLVPKAVESLK------------DSRIV 278

Query: 268 DIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDI---NFHPVS-ISSGLGH 323
            IA G+ H+     +G L S G N +GQLG         PV +   N  PV  +S G  H
Sbjct: 279 LIAGGWRHTSAADDSGKLYSWGWNKFGQLGIGSNTDSNAPVPVQGLNTSPVKLLSCGWRH 338

Query: 324 SLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPDNV 361
           + A+ E         A  + SWG   + QLG   P + 
Sbjct: 339 TFAVTE---------AGDVFSWGRGVNGQLGHNEPKDT 367



 Score = 84.3 bits (207), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 67/200 (33%), Positives = 99/200 (49%), Gaps = 16/200 (8%)

Query: 21  MRSASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPS-DVTSVSAGHYHSLAV 79
           + + S   V ++G G  G LG+     G   D + P++V GL    VTSV+ G  HS+A 
Sbjct: 184 LAATSAGDVFAWGWGRYGNLGV-----GPPEDRHLPSQVHGLEGVKVTSVACGWRHSIAA 238

Query: 80  TNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGS 139
              GAV+ +G +   QLG G    +     PK VE L    +         +SA  D G 
Sbjct: 239 DETGAVYTFGWSKYGQLGHGDCIDQLV---PKAVESLKDSRIVLIAGGWRHTSAADDSGK 295

Query: 140 LWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYS 199
           L+ WG +K GQLG+G + T++  P  V+ L    +  +S GW H  A TE G +F WG  
Sbjct: 296 LYSWGWNKFGQLGIGSN-TDSNAPVPVQGLNTSPVKLLSCGWRHTFAVTEAGDVFSWGRG 354

Query: 200 ADGRIGNLGKALESSPLDSN 219
            +G++G+      + P D+N
Sbjct: 355 VNGQLGH------NEPKDTN 368



 Score = 43.9 bits (102), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 36/119 (30%), Positives = 55/119 (46%), Gaps = 16/119 (13%)

Query: 261 VEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFHPV----- 315
           V  + V  ++CG  HSL L  NG+ LS G    GQLG    +    P  I FH +     
Sbjct: 11  VSDLRVTSVSCGSSHSLALLSNGIALSWGRGEDGQLGHGDAEERKKPRAI-FHLMQASCS 69

Query: 316 SISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPDNV--PLVVEGLEGES 372
           ++ SG  +S+A+ + R+         + SWGW    +LG    ++V  P  +  L G +
Sbjct: 70  AVCSGAEYSVALSQPRNE--------VYSWGWGDFGRLGHGDCNDVFIPQPIRALAGRN 120


>gi|218781264|ref|YP_002432582.1| chromosome condensation regulator RCC1 [Desulfatibacillum
           alkenivorans AK-01]
 gi|218762648|gb|ACL05114.1| regulator of chromosome condensation RCC1 [Desulfatibacillum
           alkenivorans AK-01]
          Length = 1525

 Score =  112 bits (280), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 96/273 (35%), Positives = 125/273 (45%), Gaps = 58/273 (21%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAW 88
           V + G    G LG     TG   DA  P +V GL S+V SV+AG + SLA+ N+G VWAW
Sbjct: 188 VWAMGRNDHGQLGF----TGDHADA--PVQVAGL-SNVKSVAAGEFFSLALKNDGTVWAW 240

Query: 89  GRNNEVQLGRG-ALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSK 147
           G N   QLG G A E+ AT   P  +  L  +   AA     +  A+ +DGS+W WG + 
Sbjct: 241 GNNESAQLGTGIAGEAVAT---PAPIAVLSNITAIAAGRRHAM--ALAEDGSVWAWGANG 295

Query: 148 RGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNL 207
            GQLG G D      P RV +LA   +  ++ GW H+LA T DG L+ WG + DGR+G  
Sbjct: 296 SGQLGFG-DFETPKAPGRVSSLA--DVTAIASGWFHSLALTSDGVLWAWGNNGDGRLG-- 350

Query: 208 GKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVV 267
                        D +S+       S+I  A                            V
Sbjct: 351 ------------TDATSDQSLPAQVSSISNA----------------------------V 370

Query: 268 DIACGFDHSLVLGRNGVLLSCGSNVYGQLGREK 300
             A G  HSL +  +G + S G N YGQLG E 
Sbjct: 371 SFAGGQRHSLAIAADGSVWSWGGNAYGQLGVES 403



 Score =  112 bits (279), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 101/307 (32%), Positives = 149/307 (48%), Gaps = 63/307 (20%)

Query: 52  DAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPK 111
           D + PT V  LP    S++AG  H+LA+ ++G+VW+WGRN+  QLG G   + +T N P+
Sbjct: 533 DVFTPTNVDALPL-AASIAAGGGHALALASDGSVWSWGRNSVGQLGLGTGGTYSTENRPQ 591

Query: 112 RVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAG 171
           ++  +   NV A    G  S A+  DGS W WG +  GQLGLG ++++   P +V AL+ 
Sbjct: 592 KINAI--SNVAAIACGGSHSLALARDGSFWSWGYNYYGQLGLGDNVSK-TTPRKVNALS- 647

Query: 172 EKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEIS 231
             +V ++ G  H+LA T DG L+ WG +  G++G          L  N  R++       
Sbjct: 648 -NVVAMAAGDRHSLALTLDGSLWSWGDNTYGQLG----------LGDNDHRNT------- 689

Query: 232 SSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGV-EVVDIACGFDHSLVLGRNGVLLSCGS 290
                                     P  V  +  VV IA G+ HSL L R+G + S G+
Sbjct: 690 --------------------------PRKVNAISNVVAIAAGYRHSLALTRDGSVWSWGN 723

Query: 291 NVYGQLGREKQDMGMFPVDINF--HPVSISSGLGHSLAICEVRSSNVTGGARGIV-SWGW 347
           N  GQLG    D    P  +    +  +I+ G  +S+AI E           G+V +WG+
Sbjct: 724 NTRGQLGLGDNDDRNTPQPVTTISNIKAIAVGNNYSIAISE----------EGLVWAWGY 773

Query: 348 NRSSQLG 354
           N S QLG
Sbjct: 774 NCSGQLG 780



 Score =  110 bits (276), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 107/351 (30%), Positives = 155/351 (44%), Gaps = 68/351 (19%)

Query: 7   VVHNHVNVLTSRIF-MRSASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSD 65
           VV N V+V   R+F +  AS  ++ ++G    G LG+     G   +   P++ PGL SD
Sbjct: 115 VVSNIVSVAAGRLFSLALASDGSLWAWGGNYYGQLGM-----GDNDNRLTPSKTPGL-SD 168

Query: 66  VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAF 125
           V +++ G YH+LA T +G VWA GRN+  QLG     + A    P +V GL  V   A  
Sbjct: 169 VAAIAGGDYHALAATQSGEVWAMGRNDHGQLGFTGDHADA----PVQVAGLSNVKSVA-- 222

Query: 126 ASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHAL 185
           A    S A+ +DG++W WG ++  QLG G        P+ +  L+   I  ++ G  HA+
Sbjct: 223 AGEFFSLALKNDGTVWAWGNNESAQLGTGIAGEAVATPAPIAVLS--NITAIAAGRRHAM 280

Query: 186 AQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEG 245
           A  EDG ++ WG +  G++G                               KA   VS  
Sbjct: 281 ALAEDGSVWAWGANGSGQLG------------------------FGDFETPKAPGRVS-- 314

Query: 246 MEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGM 305
                              +V  IA G+ HSL L  +GVL + G+N  G+LG +      
Sbjct: 315 ----------------SLADVTAIASGWFHSLALTSDGVLWAWGNNGDGRLGTDATSDQS 358

Query: 306 FPVDIN--FHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLG 354
            P  ++   + VS + G  HSLAI    S         + SWG N   QLG
Sbjct: 359 LPAQVSSISNAVSFAGGQRHSLAIAADGS---------VWSWGGNAYGQLG 400



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 102/337 (30%), Positives = 154/337 (45%), Gaps = 67/337 (19%)

Query: 28   AVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWA 87
            +V S+G  S G LGL +S  G       P ++  + S+V +++ G  HSLAV  +G++W+
Sbjct: 1053 SVWSWGYNSDGQLGLGSS--GTYSTKNRPQKINAI-SNVAAIACGGSHSLAVARDGSLWS 1109

Query: 88   WGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSK 147
            WG N   QLG G   S+ T   P++V  +   NV A  A    S A+  DGS+W WG + 
Sbjct: 1110 WGYNYYGQLGLGDNYSKTT---PQKVNAI--SNVAAIAAGEYYSLALTRDGSVWSWGDNS 1164

Query: 148  RGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNL 207
             GQLGLG D  +   P +VE L+   +  ++ G  H+LA T DG ++ WG ++ G++G  
Sbjct: 1165 DGQLGLG-DNEDRNTPQKVEVLS--NVAAIAAGEDHSLALTRDGSVWSWGRNSRGQLG-- 1219

Query: 208  GKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVV 267
                    LD N DR++   Q +++ +  KA                             
Sbjct: 1220 --------LDDNDDRNTP--QPVTTISNIKA----------------------------- 1240

Query: 268  DIACGFDHSLVLGRNGVLLSCGSNVYGQL-----GREKQDMGMFPVDINFHPVSISSGLG 322
             IA G  HS  +   G+  + G N  GQL     G    +     V +  + V +S G  
Sbjct: 1241 -IAAGNSHSFAISEEGLAWAWGYNYDGQLGIGTSGSLANENTPQKVKVISNVVGLSGGNY 1299

Query: 323  HSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPD 359
            HSLA+ E  +         + +WG N   Q+G  G D
Sbjct: 1300 HSLALTEDGA---------LWAWGDNDDGQIGSTGGD 1327



 Score = 90.9 bits (224), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 95/316 (30%), Positives = 151/316 (47%), Gaps = 33/316 (10%)

Query: 69   VSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASG 128
            V+AG   SLA+  +G++W+WG N   QLG G  +S   +  P +V+ L      AA  + 
Sbjct: 986  VAAGGNFSLALKTDGSLWSWGDNGTGQLGLGLGQSVNVFT-PTKVDALPPAAKIAAGDNH 1044

Query: 129  VVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIV--PSRVEALAGEKIVKVSFGWGHALA 186
             +  A+  DGS+W WG +  GQLGLG   T +    P ++ A++   +  ++ G  H+LA
Sbjct: 1045 AL--ALAPDGSVWSWGYNSDGQLGLGSSGTYSTKNRPQKINAIS--NVAAIACGGSHSLA 1100

Query: 187  QTEDGKLFGWGYSADGRIGNLGKALESSPLDSNI--DRSSESDQEISSSTIEKAQKLVSE 244
               DG L+ WGY+  G++G      +++P   N   + ++ +  E  S  + +   + S 
Sbjct: 1101 VARDGSLWSWGYNYYGQLGLGDNYSKTTPQKVNAISNVAAIAAGEYYSLALTRDGSVWSW 1160

Query: 245  GMEKEKYMPI-----IWEPFLVEGV-EVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGR 298
            G   +  + +        P  VE +  V  IA G DHSL L R+G + S G N  GQLG 
Sbjct: 1161 GDNSDGQLGLGDNEDRNTPQKVEVLSNVAAIAAGEDHSLALTRDGSVWSWGRNSRGQLGL 1220

Query: 299  EKQDMGMFPVDINF--HPVSISSGLGHSLAICEVRSSNVTGGARGIV-SWGWNRSSQL-- 353
            +  D    P  +    +  +I++G  HS AI E           G+  +WG+N   QL  
Sbjct: 1221 DDNDDRNTPQPVTTISNIKAIAAGNSHSFAISE----------EGLAWAWGYNYDGQLGI 1270

Query: 354  ---GRMGPDNVPLVVE 366
               G +  +N P  V+
Sbjct: 1271 GTSGSLANENTPQKVK 1286



 Score = 89.4 bits (220), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 84/271 (30%), Positives = 130/271 (47%), Gaps = 55/271 (20%)

Query: 31  SFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGR 90
           S+G    G LGL  +++        P +V  L S+V +++AG  HSLA+T +G++W+WG 
Sbjct: 620 SWGYNYYGQLGLGDNVSKT-----TPRKVNAL-SNVVAMAAGDRHSLALTLDGSLWSWGD 673

Query: 91  NNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSS-AIGDDGSLWVWGKSKRG 149
           N   QLG G  + R   N P++V  +  V    A A+G   S A+  DGS+W WG + RG
Sbjct: 674 NTYGQLGLGDNDHR---NTPRKVNAISNV---VAIAAGYRHSLALTRDGSVWSWGNNTRG 727

Query: 150 QLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGK 209
           QLGLG D  +   P  V  ++  K + V  G  +++A +E+G ++ WGY+  G+   LG 
Sbjct: 728 QLGLG-DNDDRNTPQPVTTISNIKAIAV--GNNYSIAISEEGLVWAWGYNCSGQ---LGI 781

Query: 210 ALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDI 269
               S  D N                   QK++           +I          VV +
Sbjct: 782 GTHGSLADENT-----------------PQKVI-----------VI--------SNVVGL 805

Query: 270 ACGFDHSLVLGRNGVLLSCGSNVYGQLGREK 300
           + G  HS+ L  +G L + G+N  GQ+  E+
Sbjct: 806 SAGSSHSIALTEDGALWAWGNNEAGQIAAEE 836



 Score = 79.0 bits (193), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 83/298 (27%), Positives = 141/298 (47%), Gaps = 36/298 (12%)

Query: 75  HSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAI 134
           HSLA+  +G VW WGRN+  QLG G   +R     P++   +   N+ +  A  + S A+
Sbjct: 78  HSLALKGDGTVWVWGRNDYNQLGLGDDINRLA---PEQAPVV--SNIVSVAAGRLFSLAL 132

Query: 135 GDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLF 194
             DGSLW WG +  GQLG+G D    + PS+   L+   +  ++ G  HALA T+ G+++
Sbjct: 133 ASDGSLWAWGGNYYGQLGMG-DNDNRLTPSKTPGLS--DVAAIAGGDYHALAATQSGEVW 189

Query: 195 GWGYSADGRIGNLGKALESSPLD----SNIDRSSESDQEISSSTIEKAQKLVSEGMEKEK 250
             G +  G++G  G   + +P+     SN+   S +  E  S  ++    + + G  +  
Sbjct: 190 AMGRNDHGQLGFTGDHAD-APVQVAGLSNV--KSVAAGEFFSLALKNDGTVWAWGNNESA 246

Query: 251 YM------PIIWEPFLVEGV-EVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDM 303
            +        +  P  +  +  +  IA G  H++ L  +G + + G+N  GQLG    + 
Sbjct: 247 QLGTGIAGEAVATPAPIAVLSNITAIAAGRRHAMALAEDGSVWAWGANGSGQLGFGDFET 306

Query: 304 GMFPVDIN--FHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPD 359
              P  ++      +I+SG  HSLA+           + G++ W W  +   GR+G D
Sbjct: 307 PKAPGRVSSLADVTAIASGWFHSLALT----------SDGVL-WAWGNNGD-GRLGTD 352



 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 88/290 (30%), Positives = 127/290 (43%), Gaps = 60/290 (20%)

Query: 69  VSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASG 128
           V+AG   SLA+  +G+VW+WG N   QLG G  E+   +  P  V+ L      AA   G
Sbjct: 497 VAAGGGFSLALKTDGSVWSWGNNGSGQLGLGLGENDDVFT-PTNVDALPLAASIAA--GG 553

Query: 129 VVSSAIGDDGSLWVWGKSK--RGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALA 186
             + A+  DGS+W WG++   +  LG G   +    P ++ A++   +  ++ G  H+LA
Sbjct: 554 GHALALASDGSVWSWGRNSVGQLGLGTGGTYSTENRPQKINAIS--NVAAIACGGSHSLA 611

Query: 187 QTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGM 246
              DG  + WGY+  G++G LG                     +S +T  K   L +   
Sbjct: 612 LARDGSFWSWGYNYYGQLG-LGD-------------------NVSKTTPRKVNALSN--- 648

Query: 247 EKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMF 306
                              VV +A G  HSL L  +G L S G N YGQLG    D    
Sbjct: 649 -------------------VVAMAAGDRHSLALTLDGSLWSWGDNTYGQLGLGDNDHRNT 689

Query: 307 PVDINF--HPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLG 354
           P  +N   + V+I++G  HSLA+    S         + SWG N   QLG
Sbjct: 690 PRKVNAISNVVAIAAGYRHSLALTRDGS---------VWSWGNNTRGQLG 730



 Score = 71.2 bits (173), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 81/249 (32%), Positives = 112/249 (44%), Gaps = 57/249 (22%)

Query: 126  ASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDIT-EAIVPSRVEALAGEKIVKVSFGWGHA 184
            A G  S A+  DGSLW WG +  GQLGLG   +     P++V+AL      K++ G  HA
Sbjct: 988  AGGNFSLALKTDGSLWSWGDNGTGQLGLGLGQSVNVFTPTKVDAL--PPAAKIAAGDNHA 1045

Query: 185  LAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSE 244
            LA   DG ++ WGY++DG++G LG +                    + ST  + QK+ + 
Sbjct: 1046 LALAPDGSVWSWGYNSDGQLG-LGSSG-------------------TYSTKNRPQKINAI 1085

Query: 245  GMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMG 304
                                 V  IACG  HSL + R+G L S G N YGQLG       
Sbjct: 1086 S-------------------NVAAIACGGSHSLAVARDGSLWSWGYNYYGQLGLGDNYSK 1126

Query: 305  MFPVDINF--HPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPD--- 359
              P  +N   +  +I++G  +SLA+    S         + SWG N   QLG +G +   
Sbjct: 1127 TTPQKVNAISNVAAIAAGEYYSLALTRDGS---------VWSWGDNSDGQLG-LGDNEDR 1176

Query: 360  NVPLVVEGL 368
            N P  VE L
Sbjct: 1177 NTPQKVEVL 1185



 Score = 68.9 bits (167), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 63/189 (33%), Positives = 91/189 (48%), Gaps = 39/189 (20%)

Query: 18  RIFMRSASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPS---DVTSVSAGHY 74
           R  M  A   +V ++G    G LG         GD +E  + PG  S   DVT++++G +
Sbjct: 277 RHAMALAEDGSVWAWGANGSGQLGF--------GD-FETPKAPGRVSSLADVTAIASGWF 327

Query: 75  HSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSS-A 133
           HSLA+T++G +WAWG N + +LG  A   ++    P +V  +       +FA G   S A
Sbjct: 328 HSLALTSDGVLWAWGNNGDGRLGTDATSDQSL---PAQVSSISNA---VSFAGGQRHSLA 381

Query: 134 IGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKL 193
           I  DGS+W WG +  GQLG+     E++ P+ V       +  V     H L   ED  L
Sbjct: 382 IAADGSVWSWGGNAYGQLGV-----ESLTPASV-------LTPV-----HTLYSGEDFHL 424

Query: 194 FGWGYSADG 202
           F   Y  DG
Sbjct: 425 F---YDTDG 430


>gi|307103061|gb|EFN51325.1| hypothetical protein CHLNCDRAFT_141087 [Chlorella variabilis]
          Length = 410

 Score =  112 bits (280), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 92/279 (32%), Positives = 127/279 (45%), Gaps = 83/279 (29%)

Query: 27  TAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVW 86
            AV+S+G G QGALG+ +       D YEP  +P LP +V +              G ++
Sbjct: 24  AAVLSWGLGQQGALGIRSDR-----DHYEPEHIPDLPDNVVA--------------GQLF 64

Query: 87  AWGRNNEVQLGR----GALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWV 142
           AWGRN E QLGR    G  +  A    P+ VE L + ++ AA  SGV S A+   G+L+V
Sbjct: 65  AWGRNKEGQLGRVLAPGEFDFSAA---PQPVEALSKEHIVAATGSGVASFALSRHGALFV 121

Query: 143 WGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADG 202
           +G SKRGQLGLG     A  P ++   A    V+VS GWGHA A  ++ +        +G
Sbjct: 122 FGASKRGQLGLGPGQPSAPHPQQLRLPAA--AVQVSAGWGHAAALLDEDE-------EEG 172

Query: 203 RIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVE 262
           R+               ++RS                                WEP  V+
Sbjct: 173 RL---------------VERS-------------------------------CWEPRRVD 186

Query: 263 GVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQ 301
              +  + CGFDH++VL  +G L + G N  GQLGR  Q
Sbjct: 187 --LLAGMVCGFDHTMVLAEDGSLFTMGDNSLGQLGRPSQ 223


>gi|219847606|ref|YP_002462039.1| chromosome condensation regulator RCC1 [Chloroflexus aggregans DSM
           9485]
 gi|219541865|gb|ACL23603.1| regulator of chromosome condensation RCC1 [Chloroflexus aggregans
           DSM 9485]
          Length = 784

 Score =  112 bits (280), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 105/353 (29%), Positives = 160/353 (45%), Gaps = 47/353 (13%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAW 88
           V  +GD   G LG  T+      +   P  V GLPS VT+++AG+YH+ A+T++G VW W
Sbjct: 438 VWCWGDNFYGQLGDGTTT-----NRSTPGAVSGLPSGVTAIAAGNYHTCALTSSGGVWCW 492

Query: 89  GRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKR 148
           GRN+  QLG G   +R+T   P  V GL    V A  A    + A+   G +W WG + R
Sbjct: 493 GRNDSGQLGDGTTTNRST---PGAVGGLPS-GVTAIAAGDYHTCALMSSGGVWCWGLNNR 548

Query: 149 GQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLG 208
           GQLG G   T++  P  V  L    ++ ++ G  H  A T    ++ WG ++DG++G+  
Sbjct: 549 GQLGDGS-YTDSSTPVAVGGLP-SGVMAIAAGNYHTCALTGSDGVWCWGTNSDGQLGDGT 606

Query: 209 KALESSP-----LDSNIDRSSESDQEISSSTIEKA--------QKLVSEGMEKEKYMPII 255
               S+P     L S +   +  +    + T               + +G    +     
Sbjct: 607 TTNRSTPVAVSGLPSGVTAIAAGNYHTCALTSSGGVWCWGYNLSGQLGDGTTTNRS---- 662

Query: 256 WEPFLVEGVE--VVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFH 313
             P  V G+   V  IA G +H+  L  +G +   G N YGQLG         P  ++  
Sbjct: 663 -TPGAVSGLPSGVTAIAAGDEHTCALTGSGGVWCWGDNYYGQLGDGTTTNRSTPGAVSGL 721

Query: 314 P---VSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPDNVPL 363
           P    +I++G+ H+ A+          G+ G++ WG N   QLG    D  PL
Sbjct: 722 PSGVTAIAAGVYHTCALT---------GSGGVMCWGNNGDGQLG----DGRPL 761



 Score =  103 bits (258), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 95/335 (28%), Positives = 144/335 (42%), Gaps = 34/335 (10%)

Query: 52  DAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPK 111
           D+  P  V GLPS VT+++AG  ++ A+T++G VW WGRN+  QLG G+  +R+T   P 
Sbjct: 252 DSSTPAAVGGLPSGVTAIAAGGRYTCALTSSGGVWCWGRNDSGQLGDGSFTNRST---PG 308

Query: 112 RVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAG 171
            V GL    V A  A G  + A+   G +W WG +  GQLG G   T+   P  V  L  
Sbjct: 309 AVGGLPS-GVTAIAAGGAHTCALTSSGGVWCWGGNDSGQLGDGS-YTDRSTPGAVSGLP- 365

Query: 172 EKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSP-----LDSNIDRSSES 226
             +  ++ G  H  A+T  G ++ WG +  G++G+      S+P     L S +   +  
Sbjct: 366 SGVTAIAAGGAHTCARTSSGGVWCWGGNFYGQLGDGTTTDRSTPGAVSGLPSGVTAIAAG 425

Query: 227 DQEISSST--------IEKAQKLVSEGMEKEKYMPIIWEPFLVEGVE--VVDIACGFDHS 276
           +    + T         +     + +G    +       P  V G+   V  IA G  H+
Sbjct: 426 NYHTCALTGSDGVWCWGDNFYGQLGDGTTTNRS-----TPGAVSGLPSGVTAIAAGNYHT 480

Query: 277 LVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFHPVSISSGLGHSLAICEVRSSNVT 336
             L  +G +   G N  GQLG         P  +   P  +++        C + SS   
Sbjct: 481 CALTSSGGVWCWGRNDSGQLGDGTTTNRSTPGAVGGLPSGVTAIAAGDYHTCALMSSG-- 538

Query: 337 GGARGIVSWGWNRSSQL--GRMGPDNVPLVVEGLE 369
               G+  WG N   QL  G     + P+ V GL 
Sbjct: 539 ----GVWCWGLNNRGQLGDGSYTDSSTPVAVGGLP 569



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 98/333 (29%), Positives = 141/333 (42%), Gaps = 36/333 (10%)

Query: 55  EPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVE 114
            P  V GLPS+VT+++AG+ H+ A+T +G VW WG N   QLG G+    +T   P  V 
Sbjct: 204 TPVAVSGLPSEVTAIAAGYAHTCALTGSGGVWCWGDNGFGQLGDGSFTDSST---PAAVG 260

Query: 115 GLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKI 174
           GL    V A  A G  + A+   G +W WG++  GQLG G   T    P  V  L    +
Sbjct: 261 GLPS-GVTAIAAGGRYTCALTSSGGVWCWGRNDSGQLGDGS-FTNRSTPGAVGGLP-SGV 317

Query: 175 VKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSP-----LDSNIDRSSESDQE 229
             ++ G  H  A T  G ++ WG +  G++G+      S+P     L S +   +     
Sbjct: 318 TAIAAGGAHTCALTSSGGVWCWGGNDSGQLGDGSYTDRSTPGAVSGLPSGVTAIAAGGAH 377

Query: 230 ISSSTIEKA--------QKLVSEGMEKEKYMPIIWEPFLVEGVE--VVDIACGFDHSLVL 279
             + T               + +G   ++       P  V G+   V  IA G  H+  L
Sbjct: 378 TCARTSSGGVWCWGGNFYGQLGDGTTTDRS-----TPGAVSGLPSGVTAIAAGNYHTCAL 432

Query: 280 -GRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFHPVSISSGLGHSLAICEVRSSNVTGG 338
            G +GV    G N YGQLG         P  ++  P  +++    +   C + SS     
Sbjct: 433 TGSDGVWCW-GDNFYGQLGDGTTTNRSTPGAVSGLPSGVTAIAAGNYHTCALTSSG---- 487

Query: 339 ARGIVSWGWNRSSQLGRMGPDN--VPLVVEGLE 369
             G+  WG N S QLG     N   P  V GL 
Sbjct: 488 --GVWCWGRNDSGQLGDGTTTNRSTPGAVGGLP 518



 Score = 97.8 bits (242), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 101/331 (30%), Positives = 141/331 (42%), Gaps = 26/331 (7%)

Query: 52  DAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPK 111
           D   P  V GLPS VT+++AG  H+ A T++G VW WG N   QLG G    R+T   P 
Sbjct: 354 DRSTPGAVSGLPSGVTAIAAGGAHTCARTSSGGVWCWGGNFYGQLGDGTTTDRST---PG 410

Query: 112 RVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAG 171
            V GL       A  +    +  G DG +W WG +  GQLG G   T    P  V  L  
Sbjct: 411 AVSGLPSGVTAIAAGNYHTCALTGSDG-VWCWGDNFYGQLGDGT-TTNRSTPGAVSGLP- 467

Query: 172 EKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSP-----LDSNIDRSSES 226
             +  ++ G  H  A T  G ++ WG +  G++G+      S+P     L S +   +  
Sbjct: 468 SGVTAIAAGNYHTCALTSSGGVWCWGRNDSGQLGDGTTTNRSTPGAVGGLPSGVTAIAAG 527

Query: 227 DQE---ISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVE--VVDIACGFDHSLVL-G 280
           D     + SS       L + G   +        P  V G+   V+ IA G  H+  L G
Sbjct: 528 DYHTCALMSSGGVWCWGLNNRGQLGDGSYTDSSTPVAVGGLPSGVMAIAAGNYHTCALTG 587

Query: 281 RNGVLLSCGSNVYGQLGREKQDMGMFPVDINFHPVSISSGLGHSLAICEVRSSNVTGGAR 340
            +GV    G+N  GQLG         PV ++  P  +++    +   C + SS       
Sbjct: 588 SDGVWCW-GTNSDGQLGDGTTTNRSTPVAVSGLPSGVTAIAAGNYHTCALTSSG------ 640

Query: 341 GIVSWGWNRSSQLGRMGPDN--VPLVVEGLE 369
           G+  WG+N S QLG     N   P  V GL 
Sbjct: 641 GVWCWGYNLSGQLGDGTTTNRSTPGAVSGLP 671



 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 96/338 (28%), Positives = 143/338 (42%), Gaps = 40/338 (11%)

Query: 52  DAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPK 111
           D   P  V GLPS VT+++AG+YH+ A+T +  VW WG N   QLG G   +R+T   P 
Sbjct: 405 DRSTPGAVSGLPSGVTAIAAGNYHTCALTGSDGVWCWGDNFYGQLGDGTTTNRST---PG 461

Query: 112 RVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAG 171
            V GL    V A  A    + A+   G +W WG++  GQLG G   T    P  V  L  
Sbjct: 462 AVSGLPS-GVTAIAAGNYHTCALTSSGGVWCWGRNDSGQLGDGT-TTNRSTPGAVGGLP- 518

Query: 172 EKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSP-----LDSNIDRSSES 226
             +  ++ G  H  A    G ++ WG +  G++G+      S+P     L S +   +  
Sbjct: 519 SGVTAIAAGDYHTCALMSSGGVWCWGLNNRGQLGDGSYTDSSTPVAVGGLPSGVMAIAAG 578

Query: 227 DQEISSSTIE--------KAQKLVSEGMEKEKYMPIIWEPFLVEGVE--VVDIACGFDHS 276
           +    + T           +   + +G    +  P+      V G+   V  IA G  H+
Sbjct: 579 NYHTCALTGSDGVWCWGTNSDGQLGDGTTTNRSTPVA-----VSGLPSGVTAIAAGNYHT 633

Query: 277 LVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFHP---VSISSGLGHSLAICEVRSS 333
             L  +G +   G N+ GQLG         P  ++  P    +I++G  H+ A+      
Sbjct: 634 CALTSSGGVWCWGYNLSGQLGDGTTTNRSTPGAVSGLPSGVTAIAAGDEHTCALT----- 688

Query: 334 NVTGGARGIVSWGWNRSSQLGRMGPDN--VPLVVEGLE 369
               G+ G+  WG N   QLG     N   P  V GL 
Sbjct: 689 ----GSGGVWCWGDNYYGQLGDGTTTNRSTPGAVSGLP 722



 Score = 92.0 bits (227), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 95/316 (30%), Positives = 136/316 (43%), Gaps = 28/316 (8%)

Query: 52  DAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPK 111
           D   P  V GLPS VT+++AG  H+ A+T++G V  WG N   QLG G+   R+T   P 
Sbjct: 99  DRSTPVAVSGLPSGVTAIAAGGAHTCALTSSGGVMCWGGNYFGQLGDGSYTDRST---PV 155

Query: 112 RVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAG 171
            V GL    V A  A G  + A+   G +W WG +  GQLG G  I   I P  V  L  
Sbjct: 156 AVSGLPS-GVTAIAAGGAHTCALMSSGGVWCWGYNLSGQLGDGSTIYH-ITPVAVSGLPS 213

Query: 172 EKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLD--------SNIDRS 223
           E +  ++ G+ H  A T  G ++ WG +  G++G+      S+P          + I   
Sbjct: 214 E-VTAIAAGYAHTCALTGSGGVWCWGDNGFGQLGDGSFTDSSTPAAVGGLPSGVTAIAAG 272

Query: 224 SESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVE--VVDIACGFDHSLVLGR 281
                 ++SS           G   +        P  V G+   V  IA G  H+  L  
Sbjct: 273 GRYTCALTSSGGVWCWGRNDSGQLGDGSFTNRSTPGAVGGLPSGVTAIAAGGAHTCALTS 332

Query: 282 NGVLLSCGSNVYGQLGREKQDMGMFPVDINFHP---VSISSGLGHSLAICEVRSSNVTGG 338
           +G +   G N  GQLG         P  ++  P    +I++G  H+ A    R+S+    
Sbjct: 333 SGGVWCWGGNDSGQLGDGSYTDRSTPGAVSGLPSGVTAIAAGGAHTCA----RTSS---- 384

Query: 339 ARGIVSWGWNRSSQLG 354
             G+  WG N   QLG
Sbjct: 385 -GGVWCWGGNFYGQLG 399



 Score = 91.3 bits (225), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 59/163 (36%), Positives = 84/163 (51%), Gaps = 6/163 (3%)

Query: 55  EPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVE 114
            P  V GLPS VT+++AG+YH+ A+T++G VW WG N   QLG G   +R+T   P  V 
Sbjct: 612 TPVAVSGLPSGVTAIAAGNYHTCALTSSGGVWCWGYNLSGQLGDGTTTNRST---PGAVS 668

Query: 115 GLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKI 174
           GL    V A  A    + A+   G +W WG +  GQLG G   T    P  V  L    +
Sbjct: 669 GLPS-GVTAIAAGDEHTCALTGSGGVWCWGDNYYGQLGDGT-TTNRSTPGAVSGLP-SGV 725

Query: 175 VKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLD 217
             ++ G  H  A T  G +  WG + DG++G+      ++P+D
Sbjct: 726 TAIAAGVYHTCALTGSGGVMCWGNNGDGQLGDGRPLYRTTPVD 768



 Score = 87.0 bits (214), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 85/306 (27%), Positives = 121/306 (39%), Gaps = 55/306 (17%)

Query: 66  VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAF 125
           VT+++AG +H+ A+T +G VW WG N   QLG G+   R+T   P  V GL    V A  
Sbjct: 62  VTAIAAGSWHTCALTGSGEVWCWGYNWSGQLGDGSYTDRST---PVAVSGLPS-GVTAIA 117

Query: 126 ASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHAL 185
           A G  + A+   G +  WG +  GQLG G   T+   P  V  L    +  ++ G  H  
Sbjct: 118 AGGAHTCALTSSGGVMCWGGNYFGQLGDGS-YTDRSTPVAVSGLP-SGVTAIAAGGAHTC 175

Query: 186 AQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEG 245
           A    G ++ WGY+  G++G+                          STI     +   G
Sbjct: 176 ALMSSGGVWCWGYNLSGQLGD-------------------------GSTIYHITPVAVSG 210

Query: 246 MEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGM 305
           +                  EV  IA G+ H+  L  +G +   G N +GQLG        
Sbjct: 211 LPS----------------EVTAIAAGYAHTCALTGSGGVWCWGDNGFGQLGDGSFTDSS 254

Query: 306 FPVDINFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPDN--VPL 363
            P  +   P  +++        C + SS       G+  WG N S QLG     N   P 
Sbjct: 255 TPAAVGGLPSGVTAIAAGGRYTCALTSSG------GVWCWGRNDSGQLGDGSFTNRSTPG 308

Query: 364 VVEGLE 369
            V GL 
Sbjct: 309 AVGGLP 314



 Score = 44.3 bits (103), Expect = 0.094,   Method: Compositional matrix adjust.
 Identities = 52/207 (25%), Positives = 80/207 (38%), Gaps = 59/207 (28%)

Query: 172 EKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEIS 231
           + +  ++ G  H  A T  G+++ WGY+  G++G+           S  DRS+       
Sbjct: 60  QGVTAIAAGSWHTCALTGSGEVWCWGYNWSGQLGD----------GSYTDRST------- 102

Query: 232 SSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVE--VVDIACGFDHSLVLGRNGVLLSCG 289
                                     P  V G+   V  IA G  H+  L  +G ++  G
Sbjct: 103 --------------------------PVAVSGLPSGVTAIAAGGAHTCALTSSGGVMCWG 136

Query: 290 SNVYGQLGREKQDMGMFPVDINFHP---VSISSGLGHSLAICEVRSSNVTGGARGIVSWG 346
            N +GQLG         PV ++  P    +I++G  H+   C + SS       G+  WG
Sbjct: 137 GNYFGQLGDGSYTDRSTPVAVSGLPSGVTAIAAGGAHT---CALMSSG------GVWCWG 187

Query: 347 WNRSSQLGRMGP--DNVPLVVEGLEGE 371
           +N S QLG         P+ V GL  E
Sbjct: 188 YNLSGQLGDGSTIYHITPVAVSGLPSE 214


>gi|329928889|ref|ZP_08282703.1| regulator of chromosome condensation (RCC1) repeat protein
           [Paenibacillus sp. HGF5]
 gi|328937260|gb|EGG33685.1| regulator of chromosome condensation (RCC1) repeat protein
           [Paenibacillus sp. HGF5]
          Length = 719

 Score =  112 bits (279), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 94/318 (29%), Positives = 161/318 (50%), Gaps = 42/318 (13%)

Query: 71  AGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVV 130
           AG+YH+ ++ ++G V++WG  +  QLG G   +R T   P   + L+ V       SGV 
Sbjct: 40  AGYYHTASLVSSGEVYSWGYGDRGQLGDGTWNTRTT---PVMAKNLNHV---IDIHSGVR 93

Query: 131 SS-AIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTE 189
           SS A+  DG++W WG ++ GQLG+G  IT    P++V  L+G K +     + H +A +E
Sbjct: 94  SSMALRQDGTVWTWGANENGQLGIGT-ITNVNAPAQVPGLSGIKAISGGLAY-HGMALSE 151

Query: 190 DGKLFGWGYSADGRIGNLGKALESSPL-------------DSNIDRSSESDQEISSSTIE 236
           +G ++ WG + +G +GN     ++SP+                   + +SD  + +  + 
Sbjct: 152 NGTVWTWGKNDNGELGNGTTTQQNSPVLVAGLSDVTAIAAGGYYSLALKSDGTVWAWGVN 211

Query: 237 KAQKLVSEGMEKEKYMPIIWEPFLVEGV-EVVDIACGFDHSLVLGRNGVLLSCGSNVYGQ 295
            + +L  +G   E+++P+      V G+ +V+ IA G  HSL + ++G + + G+N YG 
Sbjct: 212 GSGEL-GDGTTTERHVPV-----QVAGLTDVMAIAAGGSHSLAIRQDGTVWAWGNNTYGT 265

Query: 296 LGREKQDMGMFPVDINF--HPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQL 353
           LG   +     PV +    H V+++ G  HSLA+ +         A  + SWG N   QL
Sbjct: 266 LGDGTRTHRTRPVQVRNLQHIVAVAGGGYHSLAVDQ---------AGNVWSWGDNSQQQL 316

Query: 354 GRMGPDN--VPLVVEGLE 369
           G     +  +P+ V G+E
Sbjct: 317 GLSSNASSLIPVPVTGIE 334



 Score =  102 bits (253), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 92/303 (30%), Positives = 150/303 (49%), Gaps = 26/303 (8%)

Query: 4   LKSVVHNHVNVLTSRIFMRSASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLP 63
           L  V+  H  V +S    +  +   V ++G    G LG+ T +T V      P +VPGL 
Sbjct: 82  LNHVIDIHSGVRSSMALRQDGT---VWTWGANENGQLGIGT-ITNVNA----PAQVPGL- 132

Query: 64  SDVTSVSAG-HYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVC 122
           S + ++S G  YH +A++ NG VW WG+N+  +LG G    +   N P  V GL  V   
Sbjct: 133 SGIKAISGGLAYHGMALSENGTVWTWGKNDNGELGNGTTTQQ---NSPVLVAGLSDVTAI 189

Query: 123 AAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWG 182
           A  A G  S A+  DG++W WG +  G+LG G   TE  VP +V  L    ++ ++ G  
Sbjct: 190 A--AGGYYSLALKSDGTVWAWGVNGSGELGDGT-TTERHVPVQVAGLT--DVMAIAAGGS 244

Query: 183 HALAQTEDGKLFGWGYSADGRIGNLGKALESSPLD-SNIDR-SSESDQEISSSTIEKAQK 240
           H+LA  +DG ++ WG +  G +G+  +   + P+   N+    + +     S  +++A  
Sbjct: 245 HSLAIRQDGTVWAWGNNTYGTLGDGTRTHRTRPVQVRNLQHIVAVAGGGYHSLAVDQAGN 304

Query: 241 LVSEGMEKEKYMPIIWE-----PFLVEGVE-VVDIACGFDHSLVLGRNGVLLSCGSNVYG 294
           + S G   ++ + +        P  V G+E V +I+ G  HS+ + ++G +   G N  G
Sbjct: 305 VWSWGDNSQQQLGLSSNASSLIPVPVTGIEHVREISAGGFHSVAMKKDGTVWGWGYNSGG 364

Query: 295 QLG 297
           QLG
Sbjct: 365 QLG 367



 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 53/151 (35%), Positives = 86/151 (56%), Gaps = 9/151 (5%)

Query: 56  PTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEG 115
           P +V GL +DV +++AG  HSLA+  +G VWAWG N    LG G    R     P +V  
Sbjct: 227 PVQVAGL-TDVMAIAAGGSHSLAIRQDGTVWAWGNNTYGTLGDGTRTHRTR---PVQVRN 282

Query: 116 LDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIV 175
           L  +   A    G  S A+   G++W WG + + QLGL  + + +++P  V  +  E + 
Sbjct: 283 LQHI--VAVAGGGYHSLAVDQAGNVWSWGDNSQQQLGLSSNAS-SLIPVPVTGI--EHVR 337

Query: 176 KVSFGWGHALAQTEDGKLFGWGYSADGRIGN 206
           ++S G  H++A  +DG ++GWGY++ G++G+
Sbjct: 338 EISAGGFHSVAMKKDGTVWGWGYNSGGQLGD 368



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 49/141 (34%), Positives = 72/141 (51%), Gaps = 11/141 (7%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAW 88
           V ++G+ + G LG      G       P +V  L   + +V+ G YHSLAV   G VW+W
Sbjct: 255 VWAWGNNTYGTLG-----DGTRTHRTRPVQVRNL-QHIVAVAGGGYHSLAVDQAGNVWSW 308

Query: 89  GRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKR 148
           G N++ QLG   L S A+   P  V G++ V   +A   G  S A+  DG++W WG +  
Sbjct: 309 GDNSQQQLG---LSSNASSLIPVPVTGIEHVREISA--GGFHSVAMKKDGTVWGWGYNSG 363

Query: 149 GQLGLGKDITEAIVPSRVEAL 169
           GQLG G       +P+  +A+
Sbjct: 364 GQLGDGTYNNTRGIPTLTKAV 384


>gi|376260724|ref|YP_005147444.1| RCC1 domain-containing protein, alpha-tubulin suppressor
           [Clostridium sp. BNL1100]
 gi|373944718|gb|AEY65639.1| RCC1 domain-containing protein, alpha-tubulin suppressor
           [Clostridium sp. BNL1100]
          Length = 985

 Score =  112 bits (279), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 114/358 (31%), Positives = 168/358 (46%), Gaps = 41/358 (11%)

Query: 28  AVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWA 87
            V ++GD   G LG      G     Y P++V GL S + S+S G Y+S+A+ N+G VW 
Sbjct: 295 TVWAWGDNESGQLG-----DGTTNSKYIPSQVQGL-SGIVSISCGFYYSMALKNDGTVWV 348

Query: 88  WGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSS-AIGDDGSLWVWGKS 146
           WG N   QLG G    R   N    V GLD V    A A GV  S A+ +DG++W WG +
Sbjct: 349 WGDNTSGQLGDGTTTDR---NTAVPVSGLDGV---IAIACGVNHSMALRNDGTVWTWGFN 402

Query: 147 KRGQLGLGKDITE-AIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIG 205
             GQLG G  +++   VP  +  L G  I+ ++ G  H++A  +DG ++ WG +  G++G
Sbjct: 403 AFGQLGDGTKVSKNTAVP--ISGLDG--IIAITCGTSHSMALKDDGTVWAWGDNQYGQLG 458

Query: 206 NLGKALESSPLD-SNIDRSSESDQEISSSTIEKAQKLV-----SEGMEKEKYMP--IIWE 257
           N      ++P   SN+          S+S   K    V     +E  E  K     +I+ 
Sbjct: 459 NGTFISNTTPSQVSNLSGIKSIFCGYSTSFALKPDGTVWAWGNNEYGELGKGFTTRVIYP 518

Query: 258 PFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFHP--V 315
              +   ++  I+ G  H L L  +G + + G N YGQLG     +   PV ++      
Sbjct: 519 TETLNIGDIKAISIGSSHCLALKNDGTVWAWGDNRYGQLGDGTTTIKSLPVQVSGISGIT 578

Query: 316 SISSGLGHSLAICEVRSSNVTGGARGIV-SWGWNRSSQLGRMGPD--NVPLVVEGLEG 370
           +IS+G  HSLA+           + G V +WG N   QLG    +  N P+ V  L G
Sbjct: 579 AISAGGSHSLAL----------KSDGTVWAWGQNNVGQLGDGTKEDRNTPVQVSELSG 626



 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 89/307 (28%), Positives = 150/307 (48%), Gaps = 64/307 (20%)

Query: 52  DAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPK 111
           D   P  V GL + V+S+SAG Y+S+A+ ++G VW WG N+  QLG G   +R +   P 
Sbjct: 214 DINSPIPVEGL-NKVSSISAGKYYSMALKSDGTVWTWGENDYGQLGDGTTATRLS---PV 269

Query: 112 RVEGLDQVNVCAAFASGVVSS-AIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALA 170
           +V+ L  +    A +SG   S A+ DDG++W WG ++ GQLG G   ++ I PS+V+ L+
Sbjct: 270 QVQNLSGI---IAISSGNSHSLALKDDGTVWAWGDNESGQLGDGTTNSKYI-PSQVQGLS 325

Query: 171 GEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEI 230
           G  IV +S G+ +++A   DG ++ WG +  G++G+                        
Sbjct: 326 G--IVSISCGFYYSMALKNDGTVWVWGDNTSGQLGD------------------------ 359

Query: 231 SSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGS 290
             +T ++   +   G++                  V+ IACG +HS+ L  +G + + G 
Sbjct: 360 -GTTTDRNTAVPVSGLDG-----------------VIAIACGVNHSMALRNDGTVWTWGF 401

Query: 291 NVYGQL--GREKQDMGMFPVDINFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWN 348
           N +GQL  G +       P+      ++I+ G  HS+A+ +  +         + +WG N
Sbjct: 402 NAFGQLGDGTKVSKNTAVPISGLDGIIAITCGTSHSMALKDDGT---------VWAWGDN 452

Query: 349 RSSQLGR 355
           +  QLG 
Sbjct: 453 QYGQLGN 459



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 91/316 (28%), Positives = 144/316 (45%), Gaps = 65/316 (20%)

Query: 60  PGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQV 119
           P +   +  VS G  H+LA+ ++G VWA G N+  QLG     +    N P  VEGL++V
Sbjct: 171 PKIEGPIIKVSGGESHTLALESDGTVWACGENDYGQLGN---NNTIDINSPIPVEGLNKV 227

Query: 120 NVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSF 179
           +  +  A    S A+  DG++W WG++  GQLG G   T  + P +V+ L+G  I+ +S 
Sbjct: 228 SSIS--AGKYYSMALKSDGTVWTWGENDYGQLGDGTTATR-LSPVQVQNLSG--IIAISS 282

Query: 180 GWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQ 239
           G  H+LA  +DG ++ WG +  G++G                                  
Sbjct: 283 GNSHSLALKDDGTVWAWGDNESGQLG---------------------------------- 308

Query: 240 KLVSEGMEKEKYMPIIWEPFLVEGVE-VVDIACGFDHSLVLGRNGVLLSCGSNVYGQL-- 296
               +G    KY+     P  V+G+  +V I+CGF +S+ L  +G +   G N  GQL  
Sbjct: 309 ----DGTTNSKYI-----PSQVQGLSGIVSISCGFYYSMALKNDGTVWVWGDNTSGQLGD 359

Query: 297 GREKQDMGMFPVDINFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQL--G 354
           G         PV      ++I+ G+ HS+A+   R+         + +WG+N   QL  G
Sbjct: 360 GTTTDRNTAVPVSGLDGVIAIACGVNHSMAL---RNDGT------VWTWGFNAFGQLGDG 410

Query: 355 RMGPDNVPLVVEGLEG 370
                N  + + GL+G
Sbjct: 411 TKVSKNTAVPISGLDG 426



 Score = 88.6 bits (218), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 90/321 (28%), Positives = 145/321 (45%), Gaps = 41/321 (12%)

Query: 66  VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAF 125
           + +++ G  HS+A+ ++G VWAWG N   QLG G   S  T   P +V  L  +   + F
Sbjct: 427 IIAITCGTSHSMALKDDGTVWAWGDNQYGQLGNGTFISNTT---PSQVSNLSGIK--SIF 481

Query: 126 ASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHAL 185
                S A+  DG++W WG ++ G+LG G   T  I P+  E L    I  +S G  H L
Sbjct: 482 CGYSTSFALKPDGTVWAWGNNEYGELGKGF-TTRVIYPT--ETLNIGDIKAISIGSSHCL 538

Query: 186 AQTEDGKLFGWGYSADGRIGNLGKALESSPLD-SNIDRSSESDQEISSSTIEKAQKLV-- 242
           A   DG ++ WG +  G++G+    ++S P+  S I   +      S S   K+   V  
Sbjct: 539 ALKNDGTVWAWGDNRYGQLGDGTTTIKSLPVQVSGISGITAISAGGSHSLALKSDGTVWA 598

Query: 243 ---------SEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVY 293
                     +G ++++  P+  +   + G+ V+   C +  S  L  +G +   GS+ Y
Sbjct: 599 WGQNNVGQLGDGTKEDRNTPV--QVSELSGITVIS-NCIY-RSFALKNDGTVWVWGSDSY 654

Query: 294 GQLGREKQDMGMFPVDINFHP--VSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSS 351
             L  EK  M   P+ I+     ++I  G  H+LA+    +         + +WG N   
Sbjct: 655 -NLPLEKMTM---PIQISGLSGIIAIECGTYHNLALKNDGT---------VWAWGKNNFG 701

Query: 352 QL--GRMGPDNVPLVVEGLEG 370
           Q   G     N+P+ V GL G
Sbjct: 702 QFGDGTTTTTNIPVQVSGLSG 722



 Score = 83.6 bits (205), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 95/336 (28%), Positives = 152/336 (45%), Gaps = 54/336 (16%)

Query: 32  FGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRN 91
            GDG+     LP  ++G+ G              +T++SAG  HSLA+ ++G VWAWG+N
Sbjct: 557 LGDGTTTIKSLPVQVSGISG--------------ITAISAGGSHSLALKSDGTVWAWGQN 602

Query: 92  NEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQL 151
           N  QLG G  E R   N P +V  L  + V +       S A+ +DG++WVWG S    L
Sbjct: 603 NVGQLGDGTKEDR---NTPVQVSELSGITVISNCI--YRSFALKNDGTVWVWG-SDSYNL 656

Query: 152 GLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKAL 211
            L K      +P ++  L+G  I+ +  G  H LA   DG ++ WG +  G+ G+     
Sbjct: 657 PLEK----MTMPIQISGLSG--IIAIECGTYHNLALKNDGTVWAWGKNNFGQFGDGTTTT 710

Query: 212 ESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKE------KYMPIIWEPFL----V 261
            + P    +  S  S  +  +    ++  L S+G   +         P   E +     V
Sbjct: 711 TNIP----VQVSGLSGVKAIAVGGNRSIALKSDGTVWQWGRILVSVSPSTVETWTTARQV 766

Query: 262 EGV-EVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFHPVSISSG 320
           +G+ E+V I+    +++ L  +G + + G+N YGQLG      G     +   PV   SG
Sbjct: 767 DGLSEIVSIS----NNVALKNDGKVFTWGANDYGQLGD-----GTTTARVTVAPV---SG 814

Query: 321 LGHSLAICEVRSSNVTGGARGIV-SWGWNRSSQLGR 355
           L     +    ++++     G + +WG N   QLG 
Sbjct: 815 LEGVAGVASSDTTSMVLMNDGTIRAWGKNNFGQLGN 850



 Score = 47.4 bits (111), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 34/98 (34%), Positives = 54/98 (55%), Gaps = 10/98 (10%)

Query: 58  RVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLD 117
           +V GL S++ S+S    +++A+ N+G V+ WG N+  QLG G   +R T      +EG  
Sbjct: 765 QVDGL-SEIVSIS----NNVALKNDGKVFTWGANDYGQLGDGTTTARVTVAPVSGLEG-- 817

Query: 118 QVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGK 155
              V    +S   S  + +DG++  WGK+  GQLG G+
Sbjct: 818 ---VAGVASSDTTSMVLMNDGTIRAWGKNNFGQLGNGE 852



 Score = 41.2 bits (95), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 41/145 (28%), Positives = 67/145 (46%), Gaps = 17/145 (11%)

Query: 211 LESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIA 270
           L++    +N   +  S++ I+++TIE  Q L S         P I  P       ++ ++
Sbjct: 130 LQNETKKTNTGTTLPSEELINANTIE-TQTLDSSSNGGNLSSPKIEGP-------IIKVS 181

Query: 271 CGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFHPVSISSGLGHSLAICEV 330
            G  H+L L  +G + +CG N YGQLG          +DIN  P+ +  GL    +I   
Sbjct: 182 GGESHTLALESDGTVWACGENDYGQLGNNNT------IDIN-SPIPV-EGLNKVSSISAG 233

Query: 331 RSSNVTGGARGIV-SWGWNRSSQLG 354
           +  ++   + G V +WG N   QLG
Sbjct: 234 KYYSMALKSDGTVWTWGENDYGQLG 258


>gi|337751269|ref|YP_004645431.1| hypothetical protein KNP414_07049 [Paenibacillus mucilaginosus
           KNP414]
 gi|336302458|gb|AEI45561.1| hypothetical protein KNP414_07049 [Paenibacillus mucilaginosus
           KNP414]
          Length = 404

 Score =  111 bits (278), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 92/288 (31%), Positives = 139/288 (48%), Gaps = 44/288 (15%)

Query: 46  LTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRA 105
           +T  G +   P ++ GL  D+  VS G  HSLA+  +GAVW+WG N   QLG G  +  +
Sbjct: 116 ITEGGKNIARPVQINGLK-DIVQVSTGLVHSLALDQSGAVWSWGENIYGQLGNGTNQDSS 174

Query: 106 TWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSR 165
               P +VE L   N+ A  A    S A+ +DG +W WG+++ GQLG G +  ++ +P  
Sbjct: 175 I---PTKVEFLS--NIVAIEAGAEHSLALSNDGKVWAWGRNEFGQLGNG-ETEKSNIPRL 228

Query: 166 VEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSE 225
           V+ L  E I  ++ G  H+LA   DG ++ WGY+++G+IG                    
Sbjct: 229 VKNL--ENIEMIAGGDNHSLALDHDGAIWAWGYNSNGQIG-------------------- 266

Query: 226 SDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGV--EVVDIACGFDHSLVLGRNG 283
              + SS+  EK      +G  +EK      EP  + G+  +V  ++ G  HS  L  NG
Sbjct: 267 ---DGSSNVYEK------DGQLREKRNKT--EPVKLNGLYGKVKQVSAGIKHSTALTENG 315

Query: 284 VLLSCGSNVYGQLGREKQDMGMFPVDINF--HPVSISSGLGHSLAICE 329
            + + G N YGQLG         P+  N     + I +G  HS A+ E
Sbjct: 316 EVYAWGWNEYGQLGNGSMKDSKVPLRNNVGRSIIDIETGSYHSFAVDE 363



 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 90/305 (29%), Positives = 139/305 (45%), Gaps = 68/305 (22%)

Query: 4   LKSVVHNHVNVLTSRIFMRSASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLP 63
           LK +V     ++ S    +S    AV S+G+   G LG      G   D+  PT+V  L 
Sbjct: 132 LKDIVQVSTGLVHSLALDQSG---AVWSWGENIYGQLG-----NGTNQDSSIPTKVEFL- 182

Query: 64  SDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCA 123
           S++ ++ AG  HSLA++N+G VWAWGRN   QLG G  E     N P+ V+ L+ + + A
Sbjct: 183 SNIVAIEAGAEHSLALSNDGKVWAWGRNEFGQLGNGETEKS---NIPRLVKNLENIEMIA 239

Query: 124 AFASGVVSSAIGDDGSLWVWGKSKRGQLGLG-----------KDITEAIVPSRVEALAGE 172
              +   S A+  DG++W WG +  GQ+G G           ++      P ++  L G 
Sbjct: 240 GGDNH--SLALDHDGAIWAWGYNSNGQIGDGSSNVYEKDGQLREKRNKTEPVKLNGLYG- 296

Query: 173 KIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISS 232
           K+ +VS G  H+ A TE+G+++ WG++  G++GN        PL +N+ RS         
Sbjct: 297 KVKQVSAGIKHSTALTENGEVYAWGWNEYGQLGNGSMKDSKVPLRNNVGRS--------- 347

Query: 233 STIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNV 292
                                            ++DI  G  HS  +  +GV+ + G   
Sbjct: 348 ---------------------------------IIDIETGSYHSFAVDESGVIYAWGDAT 374

Query: 293 YGQLG 297
           YGQLG
Sbjct: 375 YGQLG 379



 Score = 84.7 bits (208), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 99/342 (28%), Positives = 155/342 (45%), Gaps = 77/342 (22%)

Query: 64  SDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCA 123
           + V S++AG Y S  + ++G VW  GRNN  QLG G      T  D      +D++    
Sbjct: 34  TSVVSINAGGYVSTILRSDGTVWTTGRNNVGQLGNG------TEKDSSYFGKVDELYDVV 87

Query: 124 AFASGVVSS-AIGDDGSLWVWGKSKRGQLGL-GKDITEAIVPSRVEALAGEKIVKVSFGW 181
           +  S +  + AI   G++W WG + +G++   GK+I     P ++  L  + IV+VS G 
Sbjct: 88  SLDSDMDHTLAITKHGTVWGWGYNSKGEITEGGKNIAR---PVQINGL--KDIVQVSTGL 142

Query: 182 GHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTI------ 235
            H+LA  + G ++ WG +  G++GN           +N D S  +  E  S+ +      
Sbjct: 143 VHSLALDQSGAVWSWGENIYGQLGN----------GTNQDSSIPTKVEFLSNIVAIEAGA 192

Query: 236 EKAQKLVSEGM---------------EKEKYMPIIWEPFLVEGVEVVD-IACGFDHSLVL 279
           E +  L ++G                E EK       P LV+ +E ++ IA G +HSL L
Sbjct: 193 EHSLALSNDGKVWAWGRNEFGQLGNGETEKSNI----PRLVKNLENIEMIAGGDNHSLAL 248

Query: 280 GRNGVLLSCGSNVYGQLG-------------REKQDMGMFPVDIN--FHPV-SISSGLGH 323
             +G + + G N  GQ+G             REK++    PV +N  +  V  +S+G+ H
Sbjct: 249 DHDGAIWAWGYNSNGQIGDGSSNVYEKDGQLREKRNK-TEPVKLNGLYGKVKQVSAGIKH 307

Query: 324 SLAICEVRSSNVTGGARGIVSWGWNRSSQLGR--MGPDNVPL 363
           S A+ E            + +WGWN   QLG   M    VPL
Sbjct: 308 STALTENGE---------VYAWGWNEYGQLGNGSMKDSKVPL 340



 Score = 77.0 bits (188), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 73/265 (27%), Positives = 113/265 (42%), Gaps = 64/265 (24%)

Query: 110 PKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEAL 169
           PK  E     +V +  A G VS+ +  DG++W  G++  GQLG G +  ++    +V+ L
Sbjct: 28  PKNSE---STSVVSINAGGYVSTILRSDGTVWTTGRNNVGQLGNGTE-KDSSYFGKVDEL 83

Query: 170 AGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQE 229
               +V +     H LA T+ G ++GWGY++ G I   GK         NI R       
Sbjct: 84  Y--DVVSLDSDMDHTLAITKHGTVWGWGYNSKGEITEGGK---------NIAR------- 125

Query: 230 ISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGV-EVVDIACGFDHSLVLGRNGVLLSC 288
                                       P  + G+ ++V ++ G  HSL L ++G + S 
Sbjct: 126 ----------------------------PVQINGLKDIVQVSTGLVHSLALDQSGAVWSW 157

Query: 289 GSNVYGQLGREKQDMGMFPVDINF--HPVSISSGLGHSLAICEVRSSNVTGGARGIVSWG 346
           G N+YGQLG         P  + F  + V+I +G  HSLA+              + +WG
Sbjct: 158 GENIYGQLGNGTNQDSSIPTKVEFLSNIVAIEAGAEHSLALSNDGK---------VWAWG 208

Query: 347 WNRSSQL--GRMGPDNVPLVVEGLE 369
            N   QL  G     N+P +V+ LE
Sbjct: 209 RNEFGQLGNGETEKSNIPRLVKNLE 233



 Score = 69.3 bits (168), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 48/171 (28%), Positives = 90/171 (52%), Gaps = 18/171 (10%)

Query: 49  VGGDAYEPTRVPGLPSDVTSV---SAGHYHSLAVTNNGAVWAWGRNNEVQLGRGA----- 100
           +G    E + +P L  ++ ++   + G  HSLA+ ++GA+WAWG N+  Q+G G+     
Sbjct: 215 LGNGETEKSNIPRLVKNLENIEMIAGGDNHSLALDHDGAIWAWGYNSNGQIGDGSSNVYE 274

Query: 101 ----LESRATWNDPKRVEGLDQVNVCAAFASGVV-SSAIGDDGSLWVWGKSKRGQLGLGK 155
               L  +    +P ++ GL         ++G+  S+A+ ++G ++ WG ++ GQLG G 
Sbjct: 275 KDGQLREKRNKTEPVKLNGL--YGKVKQVSAGIKHSTALTENGEVYAWGWNEYGQLGNGS 332

Query: 156 DITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGN 206
            + ++ VP R     G  I+ +  G  H+ A  E G ++ WG +  G++G+
Sbjct: 333 -MKDSKVPLRNNV--GRSIIDIETGSYHSFAVDESGVIYAWGDATYGQLGD 380



 Score = 54.7 bits (130), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 39/106 (36%), Positives = 54/106 (50%), Gaps = 10/106 (9%)

Query: 55  EPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVE 114
           EP ++ GL   V  VSAG  HS A+T NG V+AWG N   QLG G+++       P R  
Sbjct: 287 EPVKLNGLYGKVKQVSAGIKHSTALTENGEVYAWGWNEYGQLGNGSMKDSKV---PLRNN 343

Query: 115 -GLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLG---LGKD 156
            G   +++         S A+ + G ++ WG +  GQLG    GKD
Sbjct: 344 VGRSIIDIETGSYH---SFAVDESGVIYAWGDATYGQLGDGTFGKD 386


>gi|115458498|ref|NP_001052849.1| Os04g0435700 [Oryza sativa Japonica Group]
 gi|32487442|emb|CAE02741.1| OSJNBa0006B20.1 [Oryza sativa Japonica Group]
 gi|113564420|dbj|BAF14763.1| Os04g0435700 [Oryza sativa Japonica Group]
 gi|125548381|gb|EAY94203.1| hypothetical protein OsI_15977 [Oryza sativa Indica Group]
 gi|125590466|gb|EAZ30816.1| hypothetical protein OsJ_14886 [Oryza sativa Japonica Group]
 gi|215704772|dbj|BAG94800.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 453

 Score =  111 bits (277), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 97/347 (27%), Positives = 153/347 (44%), Gaps = 65/347 (18%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPS-DVTSVSAGHYHSLAVTNNGAVWA 87
           V S+G G  G LG      G   D + P  V  L    +  ++ G  H LAVT  G V +
Sbjct: 98  VYSWGWGDFGRLG-----HGNSSDVFTPQPVKALQGIKIKQIACGDSHCLAVTMAGEVQS 152

Query: 88  WGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSK 147
           WGRN   QLG G  E       P++++  + V V    A    ++A+ +DG L+ WG  +
Sbjct: 153 WGRNQNGQLGLGTTEDSLL---PQKIQSFEGVCVKMIAAGAEHTAAVTEDGDLYGWGWGR 209

Query: 148 RGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNL 207
            G LGLG D  + +VP +V ++ GEK+V ++ GW H +  +  G L+ +G+S  G++G+ 
Sbjct: 210 YGNLGLG-DRNDRLVPEKVSSVEGEKMVLIACGWRHTITVSSSGSLYTYGWSKYGQLGH- 267

Query: 208 GKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVV 267
                              D E           LV   +E             ++   + 
Sbjct: 268 ------------------GDFE---------DHLVPHKLEA------------LKDSSIS 288

Query: 268 DIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFHP----VSISSGLGH 323
            I+ G+ H++ L  +G L   G N +GQ+G    D   FPV + F        ++ G  H
Sbjct: 289 QISGGWRHTMALTSDGKLYGWGWNKFGQVGVGDTDDHCFPVQVKFPEDQKVAQVACGWRH 348

Query: 324 SLAICEVRSSNVTGGARGIVSWGWNRSSQLGR--MGPDNVPLVVEGL 368
           +LA  E ++         + SWG   S QLG   +   N P++++ L
Sbjct: 349 TLAFTEKKN---------VFSWGRGTSGQLGHGEIVDRNKPVMIDAL 386



 Score = 74.7 bits (182), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 58/211 (27%), Positives = 98/211 (46%), Gaps = 16/211 (7%)

Query: 3   LLKSVVHNHVNVLTSRIFMRSASGTAVVSFGD------GSQGALGLPTSLTGVGGDAYEP 56
           LL   + +   V    I   +    AV   GD      G  G LGL     G   D   P
Sbjct: 170 LLPQKIQSFEGVCVKMIAAGAEHTAAVTEDGDLYGWGWGRYGNLGL-----GDRNDRLVP 224

Query: 57  TRVPGLPSD-VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEG 115
            +V  +  + +  ++ G  H++ V+++G+++ +G +   QLG G  E       P ++E 
Sbjct: 225 EKVSSVEGEKMVLIACGWRHTITVSSSGSLYTYGWSKYGQLGHGDFEDHLV---PHKLEA 281

Query: 116 LDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIV 175
           L   ++         + A+  DG L+ WG +K GQ+G+G D  +   P +V+    +K+ 
Sbjct: 282 LKDSSISQISGGWRHTMALTSDGKLYGWGWNKFGQVGVG-DTDDHCFPVQVKFPEDQKVA 340

Query: 176 KVSFGWGHALAQTEDGKLFGWGYSADGRIGN 206
           +V+ GW H LA TE   +F WG    G++G+
Sbjct: 341 QVACGWRHTLAFTEKKNVFSWGRGTSGQLGH 371



 Score = 54.7 bits (130), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 65/243 (26%), Positives = 98/243 (40%), Gaps = 63/243 (25%)

Query: 140 LWVWGKSKRGQLGLGKDITEAIVPSRVEAL--AGEKIVKVSFGWGHALAQTED-GKLFGW 196
           L  WG+ + GQLG G D  + +VP+ +     A   I  V  G  H  A +ED  +++ W
Sbjct: 43  LCSWGRGEDGQLGHG-DAEDRLVPTVLSGFDAAAPGITSVICGADHTTAYSEDEQQVYSW 101

Query: 197 GYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIW 256
           G+   GR+G+                                      G   + + P   
Sbjct: 102 GWGDFGRLGH--------------------------------------GNSSDVFTP--- 120

Query: 257 EPF-LVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDI-NFHP 314
           +P   ++G+++  IACG  H L +   G + S G N  GQLG    +  + P  I +F  
Sbjct: 121 QPVKALQGIKIKQIACGDSHCLAVTMAGEVQSWGRNQNGQLGLGTTEDSLLPQKIQSFEG 180

Query: 315 VS---ISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPDN---VPLVVEGL 368
           V    I++G  H+ A+ E            +  WGW R   LG +G  N   VP  V  +
Sbjct: 181 VCVKMIAAGAEHTAAVTEDGD---------LYGWGWGRYGNLG-LGDRNDRLVPEKVSSV 230

Query: 369 EGE 371
           EGE
Sbjct: 231 EGE 233


>gi|345856409|ref|ZP_08808895.1| cell wall binding repeat 2 family protein [Desulfosporosinus sp.
           OT]
 gi|344330533|gb|EGW41825.1| cell wall binding repeat 2 family protein [Desulfosporosinus sp.
           OT]
          Length = 1419

 Score =  111 bits (277), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 98/299 (32%), Positives = 134/299 (44%), Gaps = 69/299 (23%)

Query: 64  SDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCA 123
           SD+  ++AG  HSLAV ++G+VWAWG N+  QLG G L+ R+T   P +V+GL QV   A
Sbjct: 602 SDIVGIAAGERHSLAVQSDGSVWAWGDNSSGQLGDGTLKERST---PVKVKGLSQVTKIA 658

Query: 124 AFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGH 183
             A G  S AI  DG +W WG ++ GQLG G    ++  P  V  L+   +  VS GW H
Sbjct: 659 --AGGDTSLAITADGKVWAWGNNQDGQLGDGTTNNQS-TPVLVPGLS--DVTTVSVGWTH 713

Query: 184 ALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVS 243
            LA   DG ++ WG                                      + +Q ++ 
Sbjct: 714 CLALKSDGGVWAWG--------------------------------------DNSQSILG 735

Query: 244 EGMEKEKYMPIIWEPFLVEGVE-VVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGR-EKQ 301
            G   + Y  +   P  V+G+  V  I+ G   SL +   GV  + G N + QLG     
Sbjct: 736 TG-SADAYCAV---PTQVKGLSGVTAISAGNQFSLAMTNQGVAEAWGRNDFNQLGDGSAA 791

Query: 302 DMGMFPVDINFHPV------SISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLG 354
                PV I   P+      SIS+G  H  A+C         G  G  SWG+N S QLG
Sbjct: 792 KFESTPVQIKNMPLVPVVDQSISAGGYH--ALC---------GTLGTRSWGYNASGQLG 839



 Score = 74.3 bits (181), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 65/213 (30%), Positives = 104/213 (48%), Gaps = 21/213 (9%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAW 88
           V ++G+   G LG      G   +   P  VPGL SDVT+VS G  H LA+ ++G VWAW
Sbjct: 673 VWAWGNNQDGQLG-----DGTTNNQSTPVLVPGL-SDVTTVSVGWTHCLALKSDGGVWAW 726

Query: 89  GRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKR 148
           G N++  LG G+ ++      P +V+GL    V A  A    S A+ + G    WG++  
Sbjct: 727 GDNSQSILGTGSADAYCA--VPTQVKGLS--GVTAISAGNQFSLAMTNQGVAEAWGRNDF 782

Query: 149 GQLGLGKDITEAIVPSRVEALAGEKIV--KVSFGWGHALAQTEDGKLFGWGYSADGRIG- 205
            QLG G        P +++ +    +V   +S G  HAL  T   +   WGY+A G++G 
Sbjct: 783 NQLGDGSAAKFESTPVQIKNMPLVPVVDQSISAGGYHALCGTLGTR--SWGYNASGQLGL 840

Query: 206 ------NLGKALESSPLDSNIDRSSESDQEISS 232
                 ++ +A+ S P      ++ ++  + +S
Sbjct: 841 GITEHISIPEAISSPPTPEYFRKAGQAAPDTAS 873



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 75/262 (28%), Positives = 123/262 (46%), Gaps = 26/262 (9%)

Query: 56  PTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEG 115
           P  VP L S +++++ G+ + LA+ N+G VWAWG N    LG G  + R T   P ++ G
Sbjct: 141 PAPVPSL-SGISAIATGYSYCLALKNDGTVWAWGSNQNGALGDGTTDDRKT---PVQISG 196

Query: 116 LD-QVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQL--GLGKDITEAIVPSRVEALAGE 172
           L   V++ A + S   S AI  DG++W WG + +GQL  GL KD         +    G 
Sbjct: 197 LSGVVSIAANYHS---SYAIKSDGTVWAWGLNDQGQLGDGLSKD-------QWLPINTGL 246

Query: 173 KIVKVSFGWGHALAQT-EDGKLFGWGYSADGRIGN-LGKALESSPLDSNIDRSSESDQEI 230
             +K     G +L    +DG L+  G S +G + N +   L   P  S++  ++      
Sbjct: 247 SNIKSLIPGGFSLTVIKQDGSLWQLGLSVNGSVSNDVEYTLVQVPGLSHVVSAAAGQNNF 306

Query: 231 SSSTIEKAQKLVSEGMEKEKY---MPIIWEPFLVEGVE--VVDIACGFDHSLVLGRNGVL 285
            +  I + Q + + G     Y     +  +P  V+G+      +AC   + L L  +G +
Sbjct: 307 MA--ILQDQTVWTWGNALPGYGSMNTVTPQPVQVQGLSGTYSAVACLGWYDLALKTDGTV 364

Query: 286 LSCGSNVYGQLGREKQDMGMFP 307
            + G+N+ G+LG   +D    P
Sbjct: 365 WAWGNNMNGELGDGTKDNHFVP 386



 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 93/308 (30%), Positives = 132/308 (42%), Gaps = 67/308 (21%)

Query: 69  VSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASG 128
           VSAG  HSL+      V AWG N   QLG G    R+T   P RV+GL +    +  A G
Sbjct: 508 VSAGDSHSLSAGE--YVMAWGSNTYGQLGDGTNIQRST---PVRVQGL-KGQASSVAAGG 561

Query: 129 VVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQT 188
             S A+  D S+  WG +  GQLG G   T     + V  L+   IV ++ G  H+LA  
Sbjct: 562 THSLALLQDKSVAAWGNNDHGQLGDGS-FTNRNTAATVNGLS--DIVGIAAGERHSLAVQ 618

Query: 189 EDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEK 248
            DG ++ WG ++ G++G                                      +G  K
Sbjct: 619 SDGSVWAWGDNSSGQLG--------------------------------------DGTLK 640

Query: 249 EKYMPIIWEPFLVEGV-EVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFP 307
           E+  P+      V+G+ +V  IA G D SL +  +G + + G+N  GQLG    +    P
Sbjct: 641 ERSTPV-----KVKGLSQVTKIAAGGDTSLAITADGKVWAWGNNQDGQLGDGTTNNQSTP 695

Query: 308 VDIN--FHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPD---NVP 362
           V +       ++S G  H LA+   +S        G+ +WG N  S LG    D    VP
Sbjct: 696 VLVPGLSDVTTVSVGWTHCLAL---KSDG------GVWAWGDNSQSILGTGSADAYCAVP 746

Query: 363 LVVEGLEG 370
             V+GL G
Sbjct: 747 TQVKGLSG 754



 Score = 68.9 bits (167), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 72/280 (25%), Positives = 134/280 (47%), Gaps = 31/280 (11%)

Query: 64  SDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCA 123
           + +T++SA   ++LA+ ++G VW WG      LG    +S +       V+  +  +V A
Sbjct: 49  AKITAISANEAYALAMKSDGTVWGWGTG---PLGNNDADSNSAL---VPVQAKNLTDVIA 102

Query: 124 AFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGH 183
             A G V+ A+ +DG++W WG ++ G+LG G   T    P+ V +L+G  I  ++ G+ +
Sbjct: 103 ISAGGDVALALKNDGTVWSWGSNQYGELGDGS-TTNRNSPAPVPSLSG--ISAIATGYSY 159

Query: 184 ALAQTEDGKLFGWGYSADGRIGNLGKALESSPLD-------SNIDRSSESDQEISSSTIE 236
            LA   DG ++ WG + +G +G+       +P+         +I  +  S   I S    
Sbjct: 160 CLALKNDGTVWAWGSNQNGALGDGTTDDRKTPVQISGLSGVVSIAANYHSSYAIKSDGTV 219

Query: 237 KA-----QKLVSEGMEKEKYMPIIWEPFLVEGVEVVD--IACGFDHSLVLGRNGVLLSCG 289
            A     Q  + +G+ K++++PI        G+  +   I  GF  + V+ ++G L   G
Sbjct: 220 WAWGLNDQGQLGDGLSKDQWLPI------NTGLSNIKSLIPGGFSLT-VIKQDGSLWQLG 272

Query: 290 SNVYGQLGREKQDMGMFPVDINFHPVSISSGLGHSLAICE 329
            +V G +  + +   +  V    H VS ++G  + +AI +
Sbjct: 273 LSVNGSVSNDVE-YTLVQVPGLSHVVSAAAGQNNFMAILQ 311



 Score = 61.2 bits (147), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 100/415 (24%), Positives = 162/415 (39%), Gaps = 100/415 (24%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAW 88
           V ++G    GALG      G   D   P ++ GL S V S++A ++ S A+ ++G VWAW
Sbjct: 169 VWAWGSNQNGALG-----DGTTDDRKTPVQISGL-SGVVSIAANYHSSYAIKSDGTVWAW 222

Query: 89  GRNNEVQLGRGALESRATW----------------------------------------- 107
           G N++ QLG G   S+  W                                         
Sbjct: 223 GLNDQGQLGDGL--SKDQWLPINTGLSNIKSLIPGGFSLTVIKQDGSLWQLGLSVNGSVS 280

Query: 108 NDPK----RVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVP 163
           ND +    +V GL  V   AA  +  +  AI  D ++W WG +  G    G   T    P
Sbjct: 281 NDVEYTLVQVPGLSHVVSAAAGQNNFM--AILQDQTVWTWGNALPG---YGSMNTVTPQP 335

Query: 164 SRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRS 223
            +V+ L+G        GW + LA   DG ++ WG + +G +G+  K     P  +  D++
Sbjct: 336 VQVQGLSGTYSAVACLGW-YDLALKTDGTVWAWGNNMNGELGDGTKDNHFVPSQNFADKT 394

Query: 224 SESDQEISSSTIEKAQKLVSE--GMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGR 281
             +    +   +     L SE   +      P++   F  +G   +    G + +L L +
Sbjct: 395 PMA---ATVGNVSLVNTLYSEPYAITIRFTKPMLQSTFNTQGNVTLRDDQGQEVALDLTQ 451

Query: 282 NG-----------VLLSCGSNVYGQLGREKQDMGM--------FPVDINFHPVS--ISSG 320
            G             LS G +    L       G+        F V + F+     +S+G
Sbjct: 452 EGPDLGRMLIKTVAPLSLGQHYTLHLANLMDLDGLTLPDYTYDFTVSLPFNTFQGGVSAG 511

Query: 321 LGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPD---NVPLVVEGLEGES 372
             HSL+  E            +++WG N   QLG  G +   + P+ V+GL+G++
Sbjct: 512 DSHSLSAGEY-----------VMAWGSNTYGQLGD-GTNIQRSTPVRVQGLKGQA 554


>gi|115446671|ref|NP_001047115.1| Os02g0554100 [Oryza sativa Japonica Group]
 gi|50725773|dbj|BAD33304.1| putative UVB-resistance protein (UVR8) [Oryza sativa Japonica
           Group]
 gi|113536646|dbj|BAF09029.1| Os02g0554100 [Oryza sativa Japonica Group]
 gi|215697683|dbj|BAG91677.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 453

 Score =  111 bits (277), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 97/347 (27%), Positives = 155/347 (44%), Gaps = 65/347 (18%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPS-DVTSVSAGHYHSLAVTNNGAVWA 87
           + S+G G  G LG      G   D + P  +  L    +T ++ G  H LAVT  G V +
Sbjct: 103 LYSWGWGDFGRLG-----HGNSSDVFNPQPIQALQGVRITQIACGDSHCLAVTVAGHVHS 157

Query: 88  WGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSK 147
           WGRN   QLG G  E       P++++  + V V    A    ++A+ +DG L+ WG  +
Sbjct: 158 WGRNQNGQLGLGNTEDSLL---PQKIQAFEGVRVKMIAAGAEHTAAVTEDGDLYGWGWGR 214

Query: 148 RGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNL 207
            G LGLG D  + ++P +V ++ G+K+V V+ GW H +  +  G ++ +G+S  G++G+ 
Sbjct: 215 YGNLGLG-DRDDRLIPEKVSSVNGQKMVLVACGWRHTITVSSSGSIYTYGWSKYGQLGH- 272

Query: 208 GKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVV 267
                              D E           LV   +E  K   I             
Sbjct: 273 ------------------GDFE---------DHLVPHKLEALKDTTI------------S 293

Query: 268 DIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINF----HPVSISSGLGH 323
            I+ G+ H++ L  +G L   G N +GQ+G    +    PV +NF      V ++ G  H
Sbjct: 294 QISGGWRHTMALAADGKLYGWGWNKFGQVGVGDNEDHCSPVQVNFPNEQKVVQVACGWRH 353

Query: 324 SLAICEVRSSNVTGGARGIVSWGWNRSSQLGR--MGPDNVPLVVEGL 368
           +LA+ E         A+ + SWG   S QLG   +   N+P +++ L
Sbjct: 354 TLALTE---------AKNVFSWGRGTSGQLGHGEIVDRNIPKMIDAL 391



 Score = 75.1 bits (183), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 56/206 (27%), Positives = 96/206 (46%), Gaps = 25/206 (12%)

Query: 69  VSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASG 128
           V+ G  H++ V+++G+++ +G +   QLG G  E       P ++E L    +       
Sbjct: 243 VACGWRHTITVSSSGSIYTYGWSKYGQLGHGDFEDHLV---PHKLEALKDTTISQISGGW 299

Query: 129 VVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQT 188
             + A+  DG L+ WG +K GQ+G+G D  +   P +V     +K+V+V+ GW H LA T
Sbjct: 300 RHTMALAADGKLYGWGWNKFGQVGVG-DNEDHCSPVQVNFPNEQKVVQVACGWRHTLALT 358

Query: 189 EDGKLFGWGYSADGRIG-------NLGKALESSPLDSNIDRSSESDQEISSSTI------ 235
           E   +F WG    G++G       N+ K +++   D +  +  ES + +  S        
Sbjct: 359 EAKNVFSWGRGTSGQLGHGEIVDRNIPKMIDALSSDGSACKQLESSKAVPMSAKVWVSPS 418

Query: 236 --------EKAQKLVSEGMEKEKYMP 253
                   EKA K +  G   E ++P
Sbjct: 419 ERYAIVPDEKAGKGIPAGNGTETHVP 444



 Score = 46.2 bits (108), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 56/223 (25%), Positives = 91/223 (40%), Gaps = 36/223 (16%)

Query: 174 IVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRS-SESDQEISS 232
           +V +S G  H++A    G +  WG   DG++G+ G A E  P+ + +  +  ++   ++S
Sbjct: 27  VVLISAGASHSVALLSGGVVCSWGRGEDGQLGH-GDA-EDRPVPTVLTAAFDDAPGGVAS 84

Query: 233 STIEKAQKLVSEGMEKEKYMPIIWEPF------------------LVEGVEVVDIACGFD 274
             I  A    +   E+ +     W  F                   ++GV +  IACG  
Sbjct: 85  VVICGADHTTAYSDEELQLYSWGWGDFGRLGHGNSSDVFNPQPIQALQGVRITQIACGDS 144

Query: 275 HSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDIN-FHPVS---ISSGLGHSLAICEV 330
           H L +   G + S G N  GQLG    +  + P  I  F  V    I++G  H+ A+ E 
Sbjct: 145 HCLAVTVAGHVHSWGRNQNGQLGLGNTEDSLLPQKIQAFEGVRVKMIAAGAEHTAAVTED 204

Query: 331 RSSNVTGGARGIVSWGWNRSSQLGRMGPDN--VPLVVEGLEGE 371
                      +  WGW R   LG    D+  +P  V  + G+
Sbjct: 205 GD---------LYGWGWGRYGNLGLGDRDDRLIPEKVSSVNGQ 238


>gi|379318631|pdb|4DNV|A Chain A, Crystal Structure Of The W285f Mutant Of Uvb-Resistance
           Protein Uvr8
 gi|379318632|pdb|4DNV|B Chain B, Crystal Structure Of The W285f Mutant Of Uvb-Resistance
           Protein Uvr8
 gi|379318633|pdb|4DNV|C Chain C, Crystal Structure Of The W285f Mutant Of Uvb-Resistance
           Protein Uvr8
 gi|379318634|pdb|4DNV|D Chain D, Crystal Structure Of The W285f Mutant Of Uvb-Resistance
           Protein Uvr8
          Length = 370

 Score =  111 bits (277), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 99/353 (28%), Positives = 155/353 (43%), Gaps = 65/353 (18%)

Query: 23  SASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPS-DVTSVSAGHYHSLAVTN 81
           S SG  V S+G G  G LG      G   D + P  +  L    +  ++ G  H LAVT 
Sbjct: 72  SQSGMEVYSWGWGDFGRLG-----HGNSSDLFTPLPIKALHGIRIKQIACGDSHCLAVTM 126

Query: 82  NGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLW 141
            G V +WGRN   QLG G  E       P++++  + + +    A    ++A+ +DG L+
Sbjct: 127 EGEVQSWGRNQNGQLGLGDTEDSLV---PQKIQAFEGIRIKMVAAGAEHTAAVTEDGDLY 183

Query: 142 VWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSAD 201
            WG  + G LGLG D T+ +VP RV +  GEK+  V+ GW H ++ +  G L+ +G+S  
Sbjct: 184 GWGWGRYGNLGLG-DRTDRLVPERVTSTGGEKMSMVACGWRHTISVSYSGALYTYGWSKY 242

Query: 202 GRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLV 261
           G++G+    LE   +   +       + +S+S I +                        
Sbjct: 243 GQLGH--GDLEDHLIPHKL-------EALSNSFISQ------------------------ 269

Query: 262 EGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINF----HPVSI 317
                  I+ GF H++ L  +G L   G N +GQ+G         PV + F      V +
Sbjct: 270 -------ISGGFRHTMALTSDGKLYGWGWNKFGQVGVGNNLDQCSPVQVRFPDDQKVVQV 322

Query: 318 SSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQL--GRMGPDNVPLVVEGL 368
           S G  H+LA+ E  +         + +WG   + QL  G     N P ++E L
Sbjct: 323 SCGWRHTLAVTERNN---------VFAWGRGTNGQLGIGESVDRNFPKIIEAL 366



 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 91/346 (26%), Positives = 136/346 (39%), Gaps = 104/346 (30%)

Query: 63  PSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVC 122
           P  V  +SAG  HS+A+ +   V +WGR  + QLG G  E R +      ++G   V+V 
Sbjct: 3   PRKVLIISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVT 62

Query: 123 AAFASGVVSS------------------------------------------AIGD---- 136
                 V  S                                          A GD    
Sbjct: 63  CGADHTVAYSQSGMEVYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIACGDSHCL 122

Query: 137 ----DGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGK 192
               +G +  WG+++ GQLGLG D  +++VP +++A  G +I  V+ G  H  A TEDG 
Sbjct: 123 AVTMEGEVQSWGRNQNGQLGLG-DTEDSLVPQKIQAFEGIRIKMVAAGAEHTAAVTEDGD 181

Query: 193 LFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYM 252
           L+GWG+   GR GNLG       L    DR                +++ S G EK    
Sbjct: 182 LYGWGW---GRYGNLG-------LGDRTDRLV-------------PERVTSTGGEKMSM- 217

Query: 253 PIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDI-- 310
                           +ACG+ H++ +  +G L + G + YGQLG    +  + P  +  
Sbjct: 218 ----------------VACGWRHTISVSYSGALYTYGWSKYGQLGHGDLEDHLIPHKLEA 261

Query: 311 --NFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLG 354
             N     IS G  H++A+              +  WGWN+  Q+G
Sbjct: 262 LSNSFISQISGGFRHTMALTSDGK---------LYGWGWNKFGQVG 298



 Score = 78.6 bits (192), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 61/197 (30%), Positives = 97/197 (49%), Gaps = 17/197 (8%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTS-VSAGHYHSLAVTNNGAVWA 87
           +  +G G  G LGL     G   D   P RV     +  S V+ G  H+++V+ +GA++ 
Sbjct: 182 LYGWGWGRYGNLGL-----GDRTDRLVPERVTSTGGEKMSMVACGWRHTISVSYSGALYT 236

Query: 88  WGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSK 147
           +G +   QLG G LE       P ++E L    +         + A+  DG L+ WG +K
Sbjct: 237 YGWSKYGQLGHGDLEDHLI---PHKLEALSNSFISQISGGFRHTMALTSDGKLYGWGWNK 293

Query: 148 RGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIG-- 205
            GQ+G+G ++ +   P +V     +K+V+VS GW H LA TE   +F WG   +G++G  
Sbjct: 294 FGQVGVGNNLDQC-SPVQVRFPDDQKVVQVSCGWRHTLAVTERNNVFAWGRGTNGQLGIG 352

Query: 206 -----NLGKALESSPLD 217
                N  K +E+  +D
Sbjct: 353 ESVDRNFPKIIEALSVD 369


>gi|218190962|gb|EEC73389.1| hypothetical protein OsI_07634 [Oryza sativa Indica Group]
          Length = 448

 Score =  111 bits (277), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 97/347 (27%), Positives = 155/347 (44%), Gaps = 65/347 (18%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPS-DVTSVSAGHYHSLAVTNNGAVWA 87
           + S+G G  G LG      G   D + P  +  L    +T ++ G  H LAVT  G V +
Sbjct: 98  LYSWGWGDFGRLG-----HGNSSDVFNPQPIQALQGVRITQIACGDSHCLAVTVAGHVHS 152

Query: 88  WGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSK 147
           WGRN   QLG G  E       P++++  + V V    A    ++A+ +DG L+ WG  +
Sbjct: 153 WGRNQNGQLGLGNTEDSLL---PQKIQAFEGVRVKMIAAGAEHTAAVTEDGDLYGWGWGR 209

Query: 148 RGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNL 207
            G LGLG D  + ++P +V ++ G+K+V V+ GW H +  +  G ++ +G+S  G++G+ 
Sbjct: 210 YGNLGLG-DRDDRLIPEKVSSVNGQKMVLVACGWRHTITVSSSGSIYTYGWSKYGQLGH- 267

Query: 208 GKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVV 267
                              D E           LV   +E  K   I             
Sbjct: 268 ------------------GDFE---------DHLVPHKLEALKDTTI------------S 288

Query: 268 DIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINF----HPVSISSGLGH 323
            I+ G+ H++ L  +G L   G N +GQ+G    +    PV +NF      V ++ G  H
Sbjct: 289 QISGGWRHTMALAADGKLYGWGWNKFGQVGVGDNEDHCSPVQVNFPNEQKVVQVACGWRH 348

Query: 324 SLAICEVRSSNVTGGARGIVSWGWNRSSQLGR--MGPDNVPLVVEGL 368
           +LA+ E         A+ + SWG   S QLG   +   N+P +++ L
Sbjct: 349 TLALTE---------AKNVFSWGRGTSGQLGHGEIVDRNIPKMIDAL 386



 Score = 74.7 bits (182), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 56/206 (27%), Positives = 96/206 (46%), Gaps = 25/206 (12%)

Query: 69  VSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASG 128
           V+ G  H++ V+++G+++ +G +   QLG G  E       P ++E L    +       
Sbjct: 238 VACGWRHTITVSSSGSIYTYGWSKYGQLGHGDFEDHLV---PHKLEALKDTTISQISGGW 294

Query: 129 VVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQT 188
             + A+  DG L+ WG +K GQ+G+G D  +   P +V     +K+V+V+ GW H LA T
Sbjct: 295 RHTMALAADGKLYGWGWNKFGQVGVG-DNEDHCSPVQVNFPNEQKVVQVACGWRHTLALT 353

Query: 189 EDGKLFGWGYSADGRIG-------NLGKALESSPLDSNIDRSSESDQEISSSTI------ 235
           E   +F WG    G++G       N+ K +++   D +  +  ES + +  S        
Sbjct: 354 EAKNVFSWGRGTSGQLGHGEIVDRNIPKMIDALSSDGSACKQLESSKAVPMSAKVWVSPS 413

Query: 236 --------EKAQKLVSEGMEKEKYMP 253
                   EKA K +  G   E ++P
Sbjct: 414 ERYAIVPDEKAGKGIPAGNGTETHVP 439



 Score = 46.2 bits (108), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 56/223 (25%), Positives = 91/223 (40%), Gaps = 36/223 (16%)

Query: 174 IVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRS-SESDQEISS 232
           +V +S G  H++A    G +  WG   DG++G+ G A E  P+ + +  +  ++   ++S
Sbjct: 22  VVLISAGASHSVALLSGGVVCSWGRGEDGQLGH-GDA-EDRPVPTVLTAAFDDAPGGVAS 79

Query: 233 STIEKAQKLVSEGMEKEKYMPIIWEPF------------------LVEGVEVVDIACGFD 274
             I  A    +   E+ +     W  F                   ++GV +  IACG  
Sbjct: 80  VVICGADHTTAYSDEELQLYSWGWGDFGRLGHGNSSDVFNPQPIQALQGVRITQIACGDS 139

Query: 275 HSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDIN-FHPVS---ISSGLGHSLAICEV 330
           H L +   G + S G N  GQLG    +  + P  I  F  V    I++G  H+ A+ E 
Sbjct: 140 HCLAVTVAGHVHSWGRNQNGQLGLGNTEDSLLPQKIQAFEGVRVKMIAAGAEHTAAVTED 199

Query: 331 RSSNVTGGARGIVSWGWNRSSQLGRMGPDN--VPLVVEGLEGE 371
                      +  WGW R   LG    D+  +P  V  + G+
Sbjct: 200 GD---------LYGWGWGRYGNLGLGDRDDRLIPEKVSSVNGQ 233


>gi|242004863|ref|XP_002423296.1| hypothetical protein Phum_PHUM047680 [Pediculus humanus corporis]
 gi|212506298|gb|EEB10558.1| hypothetical protein Phum_PHUM047680 [Pediculus humanus corporis]
          Length = 1229

 Score =  110 bits (276), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 88/299 (29%), Positives = 135/299 (45%), Gaps = 46/299 (15%)

Query: 66   VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAF 125
            + SV    Y   A+  NG ++ WG+  +  LG+G   SR +   P  +    ++ V    
Sbjct: 824  INSVLNCGYGHTALIRNGTIYTWGQTVKGCLGQGPTMSRHSLPSPISLLNCFKLEVLYVA 883

Query: 126  ASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHAL 185
                 ++A+ ++G ++ WG SK GQLGLG D+ E+  P  + +LA E ++ +S G  H L
Sbjct: 884  CGKNHTTALTNNG-VYAWGCSKYGQLGLG-DVYESPYPRLITSLANENVITLSCGQFHTL 941

Query: 186  AQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEG 245
            A TE G++F WG+   G++G LG          NID     DQ +         +++   
Sbjct: 942  ALTEKGQVFAWGWGVHGQLG-LG----------NID-----DQRLPVCVNHLKDQVIK-- 983

Query: 246  MEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGM 305
                                  DIA G  HSLVL   G + S GS V+GQLG        
Sbjct: 984  ----------------------DIAAGHGHSLVLSDKGQIFSFGSGVFGQLGTGNTTKSS 1021

Query: 306  FPV---DINFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPDNV 361
             PV    I+   + I++G  HS++ C    S +   + G+ +WG +   QLG  G   V
Sbjct: 1022 VPVLIQGISEKIILIATGYFHSIS-CGCHHSALLTVSGGVYTWGRSLDGQLGNGGHKEV 1079



 Score = 81.3 bits (199), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 69/225 (30%), Positives = 110/225 (48%), Gaps = 40/225 (17%)

Query: 10   NHVNVLTSRIFMRSASGTAVVSFGDGSQGALGLPTSLTGVGGDAYE---PTRVPGLPSD- 65
            NH   LT+           V ++G    G LGL        GD YE   P  +  L ++ 
Sbjct: 887  NHTTALTN---------NGVYAWGCSKYGQLGL--------GDVYESPYPRLITSLANEN 929

Query: 66   VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGL-DQV--NVC 122
            V ++S G +H+LA+T  G V+AWG     QLG G ++ +     P  V  L DQV  ++ 
Sbjct: 930  VITLSCGQFHTLALTEKGQVFAWGWGVHGQLGLGNIDDQRL---PVCVNHLKDQVIKDIA 986

Query: 123  AAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWG 182
            A     +V S   D G ++ +G    GQLG G + T++ VP  ++ ++ EKI+ ++ G+ 
Sbjct: 987  AGHGHSLVLS---DKGQIFSFGSGVFGQLGTG-NTTKSSVPVLIQGIS-EKIILIATGYF 1041

Query: 183  HALA--------QTEDGKLFGWGYSADGRIGNLGKALESSPLDSN 219
            H+++         T  G ++ WG S DG++GN G    ++P   N
Sbjct: 1042 HSISCGCHHSALLTVSGGVYTWGRSLDGQLGNGGHKEVTAPTQIN 1086



 Score = 78.6 bits (192), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 79/292 (27%), Positives = 121/292 (41%), Gaps = 49/292 (16%)

Query: 65   DVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAA 124
            +V  V+ G  H+ A+TNNG V+AWG +   QLG G +        P+ +  L   NV   
Sbjct: 878  EVLYVACGKNHTTALTNNG-VYAWGCSKYGQLGLGDVYESPY---PRLITSLANENVITL 933

Query: 125  FASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHA 184
                  + A+ + G ++ WG    GQLGLG +I +  +P  V  L  + I  ++ G GH+
Sbjct: 934  SCGQFHTLALTEKGQVFAWGWGVHGQLGLG-NIDDQRLPVCVNHLKDQVIKDIAAGHGHS 992

Query: 185  LAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSE 244
            L  ++ G++F +G    G++G       S P+           Q IS   I     L++ 
Sbjct: 993  LVLSDKGQIFSFGSGVFGQLGTGNTTKSSVPV---------LIQGISEKII-----LIAT 1038

Query: 245  GMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMG 304
            G                       I+CG  HS +L  +G + + G ++ GQLG       
Sbjct: 1039 GYFHS-------------------ISCGCHHSALLTVSGGVYTWGRSLDGQLGNGGHKEV 1079

Query: 305  MFPVDIN---FHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQL 353
              P  IN   F    IS G       CE  ++      + I  WG N   Q+
Sbjct: 1080 TAPTQINENTFKADCISCG-------CEFTAAQEKQTGK-IFCWGSNSVGQV 1123



 Score = 58.9 bits (141), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 63/253 (24%), Positives = 109/253 (43%), Gaps = 66/253 (26%)

Query: 128  GVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEK--IVKVSFGWGHAL 185
            G   +A+  +G+++ WG++ +G LG G  ++   +PS +  L   K  ++ V+ G  H  
Sbjct: 831  GYGHTALIRNGTIYTWGQTVKGCLGQGPTMSRHSLPSPISLLNCFKLEVLYVACGKNHTT 890

Query: 186  AQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEG 245
            A T +G ++ WG S  G++G LG   ES                          +L++  
Sbjct: 891  ALTNNG-VYAWGCSKYGQLG-LGDVYESP-----------------------YPRLITS- 924

Query: 246  MEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGM 305
                           +    V+ ++CG  H+L L   G + + G  V+GQLG    D   
Sbjct: 925  ---------------LANENVITLSCGQFHTLALTEKGQVFAWGWGVHGQLGLGNIDDQR 969

Query: 306  FPVDINFHP----VSISSGLGHSLAICEVRSSNVTGGARG-IVSWGWNRSSQLGRMGPDN 360
             PV +N         I++G GHSL + +          +G I S+G   S   G++G  N
Sbjct: 970  LPVCVNHLKDQVIKDIAAGHGHSLVLSD----------KGQIFSFG---SGVFGQLGTGN 1016

Query: 361  -----VPLVVEGL 368
                 VP++++G+
Sbjct: 1017 TTKSSVPVLIQGI 1029



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 66/233 (28%), Positives = 104/233 (44%), Gaps = 29/233 (12%)

Query: 2    RLLKSVVHNHVNVLTSRIFMRSA--SGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRV 59
            RL+ S+ + +V  L+   F   A      V ++G G  G LGL     G   D   P  V
Sbjct: 920  RLITSLANENVITLSCGQFHTLALTEKGQVFAWGWGVHGQLGL-----GNIDDQRLPVCV 974

Query: 60   PGLPSDVTS-VSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQ 118
              L   V   ++AGH HSL +++ G ++++G     QLG G     +    P  ++G+ +
Sbjct: 975  NHLKDQVIKDIAAGHGHSLVLSDKGQIFSFGSGVFGQLGTGNTTKSSV---PVLIQGISE 1031

Query: 119  VNVCAA------FASGVVSSAIGD-DGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAG 171
              +  A       + G   SA+    G ++ WG+S  GQLG G    E   P+++     
Sbjct: 1032 KIILIATGYFHSISCGCHHSALLTVSGGVYTWGRSLDGQLGNGGH-KEVTAPTQIN---- 1086

Query: 172  EKIVK---VSFGWGHALAQ-TEDGKLFGWGYSADG--RIGNLGKALESSPLDS 218
            E   K   +S G     AQ  + GK+F WG ++ G  R+ NL   ++ S   S
Sbjct: 1087 ENTFKADCISCGCEFTAAQEKQTGKIFCWGSNSVGQVRVTNLAIPVKESATKS 1139



 Score = 45.4 bits (106), Expect = 0.040,   Method: Composition-based stats.
 Identities = 36/115 (31%), Positives = 58/115 (50%), Gaps = 18/115 (15%)

Query: 264 VEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDI----NFHPVSISS 319
           +EV+ +ACG +H+  L  NGV  + G + YGQLG        +P  I    N + +++S 
Sbjct: 877 LEVLYVACGKNHTTALTNNGV-YAWGCSKYGQLGLGDVYESPYPRLITSLANENVITLSC 935

Query: 320 GLGHSLAICEVRSSNVTGGARG-IVSWGWNRSSQLGRMGPDN--VPLVVEGLEGE 371
           G  H+LA+ E          +G + +WGW    QLG    D+  +P+ V  L+ +
Sbjct: 936 GQFHTLALTE----------KGQVFAWGWGVHGQLGLGNIDDQRLPVCVNHLKDQ 980


>gi|297811737|ref|XP_002873752.1| regulator of chromosome condensation family protein [Arabidopsis
           lyrata subsp. lyrata]
 gi|297319589|gb|EFH50011.1| regulator of chromosome condensation family protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 396

 Score =  110 bits (276), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 68/189 (35%), Positives = 106/189 (56%), Gaps = 11/189 (5%)

Query: 56  PTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEG 115
           P RV GL  +V  ++ G +H+LA+  +G +WAWG N   QLG G  + R+    P  V+G
Sbjct: 189 PVRVQGL-ENVRLIAVGAFHNLALKEDGTLWAWGNNEYGQLGTGDTQPRSF---PIPVQG 244

Query: 116 LDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLG-KDITEAIVPSRVEALAGEKI 174
           LD + +    A G  S+A+ ++G ++ WG+ + G+LG G  D +  ++P +V  LAGE I
Sbjct: 245 LDDLTLVDIAAGGWHSTALTNEGEVYGWGRGEHGRLGFGDNDKSSKMLPQKVNLLAGEDI 304

Query: 175 VKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNID------RSSESDQ 228
           ++VS G  H++A T DG++F +G    GR+G   K     PL+  ID      R + +D+
Sbjct: 305 IQVSCGGTHSVALTRDGRIFSFGRGDHGRLGYGRKVTTGQPLELPIDIPPLEGRFNHTDE 364

Query: 229 EISSSTIEK 237
           E     I K
Sbjct: 365 EDDGKWIAK 373



 Score = 87.0 bits (214), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 84/276 (30%), Positives = 124/276 (44%), Gaps = 24/276 (8%)

Query: 84  AVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVW 143
           +V AWG   + QLG G  E +        VE L+  NV +       S AI DDG L+ W
Sbjct: 6   SVIAWGSGEDGQLGLGTDEEKEL---ASVVEALEPFNVRSVVGGSRNSLAICDDGKLFTW 62

Query: 144 GKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGR 203
           G ++RG LG   +      PS V++LA  KIV+ + G  H LA  + G+ + WG +  G+
Sbjct: 63  GWNQRGTLGHPPETKTESTPSLVKSLASVKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQ 122

Query: 204 IGNLGKALES-SPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKY----------- 251
            G      E+  P+  +I        +++   +  A    S  + +E Y           
Sbjct: 123 CGEEPSKDETGRPVRRDIVIPKRCAPQLTVRQV-AAGGTHSVVLTREGYVWTWGQPWPPG 181

Query: 252 -MPIIWEPFLVEGVEVVD-IACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVD 309
            +  I  P  V+G+E V  IA G  H+L L  +G L + G+N YGQLG        FP+ 
Sbjct: 182 DIKQISIPVRVQGLENVRLIAVGAFHNLALKEDGTLWAWGNNEYGQLGTGDTQPRSFPIP 241

Query: 310 I----NFHPVSISSGLGHSLAICEVRSSNVTGGARG 341
           +    +   V I++G  HS A+       V G  RG
Sbjct: 242 VQGLDDLTLVDIAAGGWHSTAL--TNEGEVYGWGRG 275



 Score = 70.5 bits (171), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 79/319 (24%), Positives = 132/319 (41%), Gaps = 38/319 (11%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPS-DVTSVSAGHYHSLAVTNNGAVWA 87
           + ++G   +G LG P            P+ V  L S  +   + G +H LAV + G  +A
Sbjct: 59  LFTWGWNQRGTLGHPPETK----TESTPSLVKSLASVKIVQAAIGGWHCLAVDDQGRAYA 114

Query: 88  WGRNNEVQLGRGALES---RATWND---PKRVEGLDQVNVCAAFASGVVSSAIGDDGSLW 141
           WG N   Q G    +    R    D   PKR     Q+ V    A G  S  +  +G +W
Sbjct: 115 WGGNEYGQCGEEPSKDETGRPVRRDIVIPKRC--APQLTVRQVAAGGTHSVVLTREGYVW 172

Query: 142 VWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSAD 201
            W     GQ     DI +  +P RV+ L  E +  ++ G  H LA  EDG L+ WG +  
Sbjct: 173 TW-----GQPWPPGDIKQISIPVRVQGL--ENVRLIAVGAFHNLALKEDGTLWAWGNNEY 225

Query: 202 GRIGNLGKALESSPLD-SNIDRSSESDQEI---SSSTIEKAQKLVSEGM----------- 246
           G++G       S P+    +D  +  D       S+ +    ++   G            
Sbjct: 226 GQLGTGDTQPRSFPIPVQGLDDLTLVDIAAGGWHSTALTNEGEVYGWGRGEHGRLGFGDN 285

Query: 247 -EKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGM 305
            +  K +P   +  L+ G +++ ++CG  HS+ L R+G + S G   +G+LG  ++    
Sbjct: 286 DKSSKMLPQ--KVNLLAGEDIIQVSCGGTHSVALTRDGRIFSFGRGDHGRLGYGRKVTTG 343

Query: 306 FPVDINFHPVSISSGLGHS 324
            P+++      +     H+
Sbjct: 344 QPLELPIDIPPLEGRFNHT 362


>gi|114321834|ref|YP_743517.1| regulator of chromosome condensation, RCC1 [Alkalilimnicola
           ehrlichii MLHE-1]
 gi|114228228|gb|ABI58027.1| regulator of chromosome condensation, RCC1 [Alkalilimnicola
           ehrlichii MLHE-1]
          Length = 821

 Score =  110 bits (276), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 102/334 (30%), Positives = 158/334 (47%), Gaps = 33/334 (9%)

Query: 32  FGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRN 91
           +G    G LGL     G   D + P +V G  SD TS+S G  H+LAV  +G +W WG+N
Sbjct: 497 WGRNHSGQLGL-----GDTDDRHAPVQVGG-DSDWTSLSVGREHTLAVKADGTLWGWGQN 550

Query: 92  NEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQL 151
              QLG G  + R T   P+RV G D      +  +G  + A+ DDG+LW WG++  GQL
Sbjct: 551 YNGQLGLGDTDDRKT---PERV-GSDSDWATVSAGTG-YTLAVKDDGTLWAWGRNSHGQL 605

Query: 152 GLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKAL 211
           GLG D      P  V+  +      VS G  H LA   DG L+ WG ++DG++G      
Sbjct: 606 GLG-DTNNRDAP--VQVASDNDWAAVSAGSRHTLAVKNDGTLWAWGRNSDGQLGLGDTDN 662

Query: 212 ESSP--LDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPI-----IWEPFLVEG- 263
              P  + S+ D ++ S     +  ++    L + G   +  + +        P  V G 
Sbjct: 663 RDVPEQVGSDTDWAAVSTGSGHTLAVKTDGTLWAWGRNSDGQLGLGDTDERHAPEQVGGD 722

Query: 264 VEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDI--NFHPVSISSGL 321
            +   +  G+ H+L +  +G L   G N+YGQLG    D    P+ +  +    ++++G 
Sbjct: 723 SDWAAVTAGWQHTLAIKNDGTLWGWGLNLYGQLGLGDTDGRHAPMQVGSDSDWATVAAGR 782

Query: 322 GHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGR 355
            H+LA+ +  +         + +WG NR  QLG+
Sbjct: 783 YHTLAVKDDGT---------LRAWGRNRFGQLGQ 807



 Score =  101 bits (251), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 96/313 (30%), Positives = 147/313 (46%), Gaps = 41/313 (13%)

Query: 69  VSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASG 128
           ++AG  H+LA+  +G +WAWG+NN  QLG G  E R T   P +V G D  +  A  A G
Sbjct: 128 LAAGGVHTLAMKADGTLWAWGQNNVGQLGLGDTEKRDT---PAQV-GSD-TDWAAVSAGG 182

Query: 129 VVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQT 188
             + A+ DDG+LW WG++  GQLGLG D  +   P +V + +    V VS G  H LA  
Sbjct: 183 AYTLAVKDDGTLWAWGENYFGQLGLG-DTDDRHAPEQVGSDS--DWVAVSAGRHHTLALK 239

Query: 189 EDGKLFGWGYSADGRIGNLGKALESSP--LDSNIDRSSESDQEISSSTIEKAQKLVSEGM 246
            DG L+ WG +  G++G  G    ++P  + S+ D +     +  S  + +   L S G 
Sbjct: 240 ADGTLWAWGRNYFGQLGLGGTTNRNAPEQVGSHSDWAGVIGGDRHSLAVREDGTLWSWGQ 299

Query: 247 EK----------EKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQL 296
                       E+  P      +    +   ++ G  H+L +  +G L + G N +GQL
Sbjct: 300 NNVGQLGLGDTVERRRP----EQVGNDSDWATVSAGLLHTLAVKNDGTLWAWGGNGFGQL 355

Query: 297 GREKQDMGMFPVDI--NFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLG 354
           G    D    PV +  +    ++++G  +SLA+    S         + SWGWN   +LG
Sbjct: 356 GLGDTDNRDAPVQVGSDNDWAALNAGQRYSLAVKNDGS---------LWSWGWNDFGELG 406

Query: 355 ------RMGPDNV 361
                 R  P+ V
Sbjct: 407 LGDTDDRHAPEQV 419



 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 106/346 (30%), Positives = 159/346 (45%), Gaps = 57/346 (16%)

Query: 31  SFGDGSQGALGLPTSLTGVGGDAYEPTRVP--GLPSDVTSVSAGHYHSLAVTNNGAVWAW 88
           S+G  + G LGL        GD  E  R    G  SD  +VSAG  H+LAV N+G +WAW
Sbjct: 296 SWGQNNVGQLGL--------GDTVERRRPEQVGNDSDWATVSAGLLHTLAVKNDGTLWAW 347

Query: 89  GRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGV-VSSAIGDDGSLWVWGKSK 147
           G N   QLG G  ++R   + P +V G D  N  AA  +G   S A+ +DGSLW WG + 
Sbjct: 348 GGNGFGQLGLGDTDNR---DAPVQV-GSD--NDWAALNAGQRYSLAVKNDGSLWSWGWND 401

Query: 148 RGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNL 207
            G+LGLG D  +   P +V    G +   V+ G  H L    DG L  WG +  G +G  
Sbjct: 402 FGELGLG-DTDDRHAPEQVGG--GMEWAAVTAGMYHTLGVKADGTLRAWGRNDFGELGLG 458

Query: 208 GKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGM----------------EKEKY 251
                +SPL +     +E+D   +S+   + Q + ++G                   +++
Sbjct: 459 VMVYITSPLQT----VTEADWAAASAGQYQTQAVKADGSLWGWGRNHSGQLGLGDTDDRH 514

Query: 252 MPIIWEPFLVEG-VEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFP--V 308
            P+      V G  +   ++ G +H+L +  +G L   G N  GQLG    D    P  V
Sbjct: 515 APV-----QVGGDSDWTSLSVGREHTLAVKADGTLWGWGQNYNGQLGLGDTDDRKTPERV 569

Query: 309 DINFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLG 354
             +    ++S+G G++LA+ +  +         + +WG N   QLG
Sbjct: 570 GSDSDWATVSAGTGYTLAVKDDGT---------LWAWGRNSHGQLG 606



 Score = 91.7 bits (226), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 85/269 (31%), Positives = 125/269 (46%), Gaps = 56/269 (20%)

Query: 31  SFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGR 90
           ++G  S G LGL     G   +   P +V    +D  +VSAG  H+LAV N+G +WAWGR
Sbjct: 596 AWGRNSHGQLGL-----GDTNNRDAPVQVAS-DNDWAAVSAGSRHTLAVKNDGTLWAWGR 649

Query: 91  NNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQ 150
           N++ QLG G  ++R     P++V G D      +  SG  + A+  DG+LW WG++  GQ
Sbjct: 650 NSDGQLGLGDTDNRDV---PEQV-GSDTDWAAVSTGSG-HTLAVKTDGTLWAWGRNSDGQ 704

Query: 151 LGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKA 210
           LGLG D  E   P +V   +      V+ GW H LA   DG L+GWG +  G++G LG  
Sbjct: 705 LGLG-DTDERHAPEQVGGDS--DWAAVTAGWQHTLAIKNDGTLWGWGLNLYGQLG-LG-- 758

Query: 211 LESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIA 270
            ++    + +   S+SD                                         +A
Sbjct: 759 -DTDGRHAPMQVGSDSDWAT--------------------------------------VA 779

Query: 271 CGFDHSLVLGRNGVLLSCGSNVYGQLGRE 299
            G  H+L +  +G L + G N +GQLG+ 
Sbjct: 780 AGRYHTLAVKDDGTLRAWGRNRFGQLGQR 808



 Score = 88.2 bits (217), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 102/352 (28%), Positives = 158/352 (44%), Gaps = 41/352 (11%)

Query: 31  SFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGR 90
           ++G+   G LGL     G   D + P +V G  SD  +VSAG +H+LA+  +G +WAWGR
Sbjct: 196 AWGENYFGQLGL-----GDTDDRHAPEQV-GSDSDWVAVSAGRHHTLALKADGTLWAWGR 249

Query: 91  NNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQ 150
           N   QLG G   +R   N P++V      +          S A+ +DG+LW WG++  GQ
Sbjct: 250 NYFGQLGLGGTTNR---NAPEQVG--SHSDWAGVIGGDRHSLAVREDGTLWSWGQNNVGQ 304

Query: 151 LGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKA 210
           LGLG D  E   P +V   +      VS G  H LA   DG L+ WG +  G++G     
Sbjct: 305 LGLG-DTVERRRPEQVGNDS--DWATVSAGLLHTLAVKNDGTLWAWGGNGFGQLGLGDTD 361

Query: 211 LESSPLD--SNIDRSSESDQEISSSTIEKAQKLVSEGME----------KEKYMPIIWEP 258
              +P+   S+ D ++ +  +  S  ++    L S G             +++ P     
Sbjct: 362 NRDAPVQVGSDNDWAALNAGQRYSLAVKNDGSLWSWGWNDFGELGLGDTDDRHAP----E 417

Query: 259 FLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMG-MFPVDINFHPVSI 317
            +  G+E   +  G  H+L +  +G L + G N +G+LG     +G M  +      V+ 
Sbjct: 418 QVGGGMEWAAVTAGMYHTLGVKADGTLRAWGRNDFGELG-----LGVMVYITSPLQTVTE 472

Query: 318 SSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPDN--VPLVVEG 367
           +     S    + ++    G   G   WG N S QLG    D+   P+ V G
Sbjct: 473 ADWAAASAGQYQTQAVKADGSLWG---WGRNHSGQLGLGDTDDRHAPVQVGG 521


>gi|379719198|ref|YP_005311329.1| protein ChiA12 [Paenibacillus mucilaginosus 3016]
 gi|378567870|gb|AFC28180.1| ChiA12 [Paenibacillus mucilaginosus 3016]
          Length = 1205

 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 91/276 (32%), Positives = 136/276 (49%), Gaps = 57/276 (20%)

Query: 56  PTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEG 115
           P +V  L S V +++AG  H+LA+ ++G VWAWG N   QLG G+   R   N P +VEG
Sbjct: 79  PVQVQDLHS-VEAIAAGGSHNLAIKSDGTVWAWGFNGYGQLGDGSTTGR---NTPVQVEG 134

Query: 116 LDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIV 175
           L  +   AA      S A+  DG++W WG+++ GQLG G   T+   P RV+ L  + +V
Sbjct: 135 LRSIVGAAAHYDH--SLALKSDGTVWAWGRNEYGQLGDGSK-TDRHTPVRVKGL--DSVV 189

Query: 176 KVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTI 235
            +S G+G++LA   DG ++ WG +  G++GN G   +SS                     
Sbjct: 190 AISSGFGYSLAVKSDGTVWAWGKNEYGQLGN-GSTTQSS--------------------- 227

Query: 236 EKAQKLVSEGMEKEKYMPIIWEPFLVEGVE-VVDIACGFDHSLVLGRNGVLLSCGSNVYG 294
                                 P  V+G+  V  +A G  H+L + R+G + S G N+ G
Sbjct: 228 ---------------------APVQVQGLHSVTAVASGDYHNLAIKRDGTVWSWGPNLAG 266

Query: 295 QLGREKQDMGMF-PVDIN--FHPVSISSGLGHSLAI 327
           QLG +  DM  + PV +      V + +G GHSLA+
Sbjct: 267 QLG-DGSDMDRYTPVQVEGFSSAVDVDAGFGHSLAL 301



 Score =  108 bits (271), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 95/272 (34%), Positives = 137/272 (50%), Gaps = 37/272 (13%)

Query: 56  PTRVPGLPSDVTSVSAGHY-HSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVE 114
           P +V GL S V +  A HY HSLA+ ++G VWAWGRN   QLG G+   R T   P RV+
Sbjct: 129 PVQVEGLRSIVGA--AAHYDHSLALKSDGTVWAWGRNEYGQLGDGSKTDRHT---PVRVK 183

Query: 115 GLDQVNVCAAFASGV-VSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEK 173
           GLD V    A +SG   S A+  DG++W WGK++ GQLG G   T++  P +V+ L    
Sbjct: 184 GLDSV---VAISSGFGYSLAVKSDGTVWAWGKNEYGQLGNGS-TTQSSAPVQVQGL--HS 237

Query: 174 IVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSS 233
           +  V+ G  H LA   DG ++ WG +  G++G+           S++DR +    E  SS
Sbjct: 238 VTAVASGDYHNLAIKRDGTVWSWGPNLAGQLGD----------GSDMDRYTPVQVEGFSS 287

Query: 234 TIE------KAQKLVSEGMEKE--KYMPIIW-----EPFLVEGVE-VVDIACGFDHSLVL 279
            ++       +  L S+G       Y    W      P  V+ ++ VVDIA G  HSL +
Sbjct: 288 AVDVDAGFGHSLALKSDGTVWAWGNYQFNEWGFGSSTPVQVQELDSVVDIAAGTQHSLAV 347

Query: 280 GRNGVLLSCGSNVYGQLGREKQDMGMFPVDIN 311
             +G + + G N  GQLG       + P+ + 
Sbjct: 348 RNDGTVWAWGKNDNGQLGDGTSTARLTPIKVQ 379



 Score = 91.3 bits (225), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 93/303 (30%), Positives = 135/303 (44%), Gaps = 70/303 (23%)

Query: 72  GHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVS 131
           G  H+LA+  NG VWAWG     QLG G+     T   P  V+  D  +V A  A G  +
Sbjct: 47  GESHTLALNANGTVWAWGGG---QLGNGS-----TTGSPAPVQVQDLHSVEAIAAGGSHN 98

Query: 132 SAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDG 191
            AI  DG++W WG +  GQLG G   T    P +VE L    IV  +  + H+LA   DG
Sbjct: 99  LAIKSDGTVWAWGFNGYGQLGDGS-TTGRNTPVQVEGL--RSIVGAAAHYDHSLALKSDG 155

Query: 192 KLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKY 251
            ++ WG +  G++G                                      +G + +++
Sbjct: 156 TVWAWGRNEYGQLG--------------------------------------DGSKTDRH 177

Query: 252 MPIIWEPFLVEGVE-VVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDI 310
            P+      V+G++ VV I+ GF +SL +  +G + + G N YGQLG         PV +
Sbjct: 178 TPV-----RVKGLDSVVAISSGFGYSLAVKSDGTVWAWGKNEYGQLGNGSTTQSSAPVQV 232

Query: 311 N-FHPVS-ISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPD---NVPLVV 365
              H V+ ++SG  H+LAI    +         + SWG N + QLG  G D     P+ V
Sbjct: 233 QGLHSVTAVASGDYHNLAIKRDGT---------VWSWGPNLAGQLGD-GSDMDRYTPVQV 282

Query: 366 EGL 368
           EG 
Sbjct: 283 EGF 285



 Score = 52.0 bits (123), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 29/61 (47%), Positives = 38/61 (62%), Gaps = 4/61 (6%)

Query: 56  PTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEG 115
           P +V  L S V  ++AG  HSLAV N+G VWAWG+N+  QLG G   +R T   P +V+G
Sbjct: 325 PVQVQELDS-VVDIAAGTQHSLAVRNDGTVWAWGKNDNGQLGDGTSTARLT---PIKVQG 380

Query: 116 L 116
            
Sbjct: 381 F 381


>gi|90657578|gb|ABD96878.1| hypothetical protein [Cleome spinosa]
          Length = 393

 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 64/163 (39%), Positives = 95/163 (58%), Gaps = 5/163 (3%)

Query: 56  PTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEG 115
           P RV GL  +V  ++ G +H+LA+  NG +WAWG N   QLG G  + R+    P  V+G
Sbjct: 189 PVRVQGL-ENVRLIAVGAFHNLALEENGTLWAWGNNEYGQLGTGDTQPRS---QPIPVQG 244

Query: 116 LDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLG-KDITEAIVPSRVEALAGEKI 174
           LD + +    A G  S+A+ D G ++ WG+ + G+LG G  D +  ++P +V  LAGE I
Sbjct: 245 LDSLTLVDIAAGGWHSTALTDKGEVYGWGRGEHGRLGFGDNDKSSKMLPQKVNLLAGEDI 304

Query: 175 VKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLD 217
           ++VS G  H++A T DG++F +G    GR+G   K     PLD
Sbjct: 305 IQVSCGGTHSVALTRDGRIFSFGRGDHGRLGCGRKVTTGQPLD 347



 Score = 85.5 bits (210), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 91/292 (31%), Positives = 129/292 (44%), Gaps = 40/292 (13%)

Query: 87  AWGRNNEVQLGRGALESRATWNDPKR----VEGLDQVNVCAAFASGVVSSAIGDDGSLWV 142
           AWG   + QLG G        ND K     VE L+   V +  +    S AI DDG+L+ 
Sbjct: 9   AWGSGEDGQLGLGT-------NDEKEWVCVVEALEPYAVRSVVSGSRNSLAICDDGTLFT 61

Query: 143 WGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADG 202
           WG ++RG LG   +     +PS+V+ALA  KIV+ + G  H LA  + G+ + WG +  G
Sbjct: 62  WGWNQRGTLGHPPETKTENIPSQVKALANVKIVQAAIGGWHCLAVDDQGRAYAWGGNEYG 121

Query: 203 RIG-NLGKALESSPLDSNIDRSSESDQEISSSTIEKAQK----LVSEGMEKEKYMPI--- 254
           + G   GK     PL  +I        ++    +         L  EG       P    
Sbjct: 122 QCGEEPGKDEMERPLRRDIVIPKRCAPKLVVRQVAAGGTHSVVLTREGHVWSWGQPWPPG 181

Query: 255 ----IWEPFLVEGVEVVD-IACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVD 309
               I  P  V+G+E V  IA G  H+L L  NG L + G+N YGQLG         P+ 
Sbjct: 182 DIKQISIPVRVQGLENVRLIAVGAFHNLALEENGTLWAWGNNEYGQLGTGDTQPRSQPIP 241

Query: 310 I----NFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMG 357
           +    +   V I++G  HS A+ +          +G V +GW R    GR+G
Sbjct: 242 VQGLDSLTLVDIAAGGWHSTALTD----------KGEV-YGWGRGEH-GRLG 281



 Score = 70.9 bits (172), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 91/366 (24%), Positives = 145/366 (39%), Gaps = 87/366 (23%)

Query: 24  ASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGL--PSDVTSVSAGHYHSLAVTN 81
           A+ T V+++G G  G LGL T+      D  E   V     P  V SV +G  +SLA+ +
Sbjct: 2   AASTTVIAWGSGEDGQLGLGTN------DEKEWVCVVEALEPYAVRSVVSGSRNSLAICD 55

Query: 82  NGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLW 141
           +G ++ WG N    LG        T N P +V+ L  V +  A   G    A+ D G  +
Sbjct: 56  DGTLFTWGWNQRGTLGHPP--ETKTENIPSQVKALANVKIVQAAIGGWHCLAVDDQGRAY 113

Query: 142 VWGKSKRGQLG--LGKD------------------------------------------- 156
            WG ++ GQ G   GKD                                           
Sbjct: 114 AWGGNEYGQCGEEPGKDEMERPLRRDIVIPKRCAPKLVVRQVAAGGTHSVVLTREGHVWS 173

Query: 157 ---------ITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNL 207
                    I +  +P RV+ L  E +  ++ G  H LA  E+G L+ WG +  G++G  
Sbjct: 174 WGQPWPPGDIKQISIPVRVQGL--ENVRLIAVGAFHNLALEENGTLWAWGNNEYGQLGTG 231

Query: 208 GKALESSP-----LDSNIDRSSESDQEISSSTIEKAQKL-----------VSEGMEKEKY 251
                S P     LDS       +    S++  +K +               +  +  K 
Sbjct: 232 DTQPRSQPIPVQGLDSLTLVDIAAGGWHSTALTDKGEVYGWGRGEHGRLGFGDNDKSSKM 291

Query: 252 MPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDIN 311
           +P   +  L+ G +++ ++CG  HS+ L R+G + S G   +G+LG  ++     P+D+ 
Sbjct: 292 LPQ--KVNLLAGEDIIQVSCGGTHSVALTRDGRIFSFGRGDHGRLGCGRKVTTGQPLDV- 348

Query: 312 FHPVSI 317
             PV I
Sbjct: 349 --PVKI 352


>gi|326506178|dbj|BAJ86407.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 389

 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 62/166 (37%), Positives = 99/166 (59%), Gaps = 4/166 (2%)

Query: 56  PTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEG 115
           P RV GL   V+ ++ G +H+LA++ +  +WAWG N   QLG G  + R+    P RVEG
Sbjct: 193 PVRVQGL-EQVSMIAVGAFHNLALSVDRILWAWGNNEYGQLGIGDTQPRS---QPIRVEG 248

Query: 116 LDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIV 175
           L  +++    A G  S+A+  +G ++ WG+ + G+LG G D +  +VP +V+ LAGE IV
Sbjct: 249 LSNLSLVDIAAGGWHSAALTKEGEVYAWGRGEHGRLGFGDDKSSHMVPLQVQLLAGEDIV 308

Query: 176 KVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNID 221
           +VS G  H++  T DG++F +G    GR+G+  K     P++  I+
Sbjct: 309 QVSCGGTHSVVLTSDGRIFSYGRGDHGRLGDGRKVTTGHPMEVPIN 354



 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 93/307 (30%), Positives = 137/307 (44%), Gaps = 29/307 (9%)

Query: 84  AVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVW 143
           AV AWG   + QLG G  + +   +  + +  LD   V A  A    S AI DDGSL+ W
Sbjct: 9   AVLAWGSGEDGQLGMGGCDEK---DRARCICALDAYAVSAVVAGSRNSLAICDDGSLFTW 65

Query: 144 GKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGR 203
           G ++RG LG   +      P+ V+AL G KIV+ + G  H LA  + G+ + WG +  G+
Sbjct: 66  GWNQRGTLGHPPETKTESSPAHVDALVGVKIVQAAIGGWHCLAVDDKGRAYAWGGNEYGQ 125

Query: 204 IGNLGKALE--SSPLDSNIDRSSESDQEISSSTIEKAQK----LVSEGMEKEKYMPI--- 254
            G   +  E  +  L  +I        ++    +         L  EG       P    
Sbjct: 126 CGEEPERKEDGTRALRRDIPIPQRCALKLKVRQVAAGGTHSVVLTQEGHVWTWGQPWPPG 185

Query: 255 ----IWEPFLVEGVEVVD-IACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVD 309
               I  P  V+G+E V  IA G  H+L L  + +L + G+N YGQLG         P+ 
Sbjct: 186 DIKNISTPVRVQGLEQVSMIAVGAFHNLALSVDRILWAWGNNEYGQLGIGDTQPRSQPIR 245

Query: 310 I----NFHPVSISSGLGHSLAICEVRSSNVTG-GARGIVSWGWNRSSQLGRMGPDNVPLV 364
           +    N   V I++G  HS A+ +       G G  G + +G ++SS +       VPL 
Sbjct: 246 VEGLSNLSLVDIAAGGWHSAALTKEGEVYAWGRGEHGRLGFGDDKSSHM-------VPLQ 298

Query: 365 VEGLEGE 371
           V+ L GE
Sbjct: 299 VQLLAGE 305



 Score = 89.0 bits (219), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 78/266 (29%), Positives = 123/266 (46%), Gaps = 52/266 (19%)

Query: 56  PTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEG 115
           P R   L   V  V+AG  HS+ +T  G VW WG+        G +++ +T   P RV+G
Sbjct: 147 PQRC-ALKLKVRQVAAGGTHSVVLTQEGHVWTWGQ----PWPPGDIKNIST---PVRVQG 198

Query: 116 LDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIV 175
           L+QV++ A  A    + A+  D  LW WG ++ GQLG+G D      P RVE L+   +V
Sbjct: 199 LEQVSMIAVGA--FHNLALSVDRILWAWGNNEYGQLGIG-DTQPRSQPIRVEGLSNLSLV 255

Query: 176 KVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTI 235
            ++ G  H+ A T++G+++ WG    GR+G                              
Sbjct: 256 DIAAGGWHSAALTKEGEVYAWGRGEHGRLGF----------------------------- 286

Query: 236 EKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQ 295
                    G +K  +M +  +  L+ G ++V ++CG  HS+VL  +G + S G   +G+
Sbjct: 287 ---------GDDKSSHM-VPLQVQLLAGEDIVQVSCGGTHSVVLTSDGRIFSYGRGDHGR 336

Query: 296 LGREKQDMGMFP--VDINFHPVSISS 319
           LG  ++     P  V IN  P   S+
Sbjct: 337 LGDGRKVTTGHPMEVPINLPPPKTST 362


>gi|91202557|emb|CAJ72196.1| hypothetical protein kustd1451 [Candidatus Kuenenia
           stuttgartiensis]
          Length = 1413

 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 92/329 (27%), Positives = 160/329 (48%), Gaps = 30/329 (9%)

Query: 52  DAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPK 111
           D+  P +V GL +D  +++ G YH++A+ ++G VW WG NN  QLG G   +R+T   P 
Sbjct: 630 DSSTPVQVSGL-TDAIAIAGGVYHTIALKSDGTVWTWGWNNSGQLGDGTTINRST---PV 685

Query: 112 RVEGLDQVNVCAAFASGVVSS-AIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALA 170
           +V GL  V    A A G   + A+  DG++W WG +  GQLG G   T    P +V+ LA
Sbjct: 686 QVIGLTDV---IAIAGGDYHTIALKSDGTVWTWGFNYYGQLG-GGATTNRSTPVQVKGLA 741

Query: 171 GEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSN--IDRSSESDQ 228
              I+ ++ G+ H++A   DG ++ WGY+  G++G+       +P+  +   D  + +  
Sbjct: 742 --DIIAIAGGYVHSIALKSDGTVWAWGYNGYGQLGDGSTTDHLTPVQVSGLTDIIAIAGG 799

Query: 229 EISSSTIEKAQKLVSEGMEK-----EKYMPIIWEPFLVEGV-EVVDIACGFDHSLVLGRN 282
            I +  ++    + + G  +     +        P  V G+ +V+ +     H++ L  +
Sbjct: 800 YIHTIALKSDGTVWAWGHNEGGQLGDGTTTNSSTPVQVSGLTDVIAVTARLYHTIALKSD 859

Query: 283 GVLLSCGSNVYGQLGREKQDMGMFPVDIN--FHPVSISSGLGHSLAICEVRSSNVTGGAR 340
           G + + G N+YGQLG         PV +      ++I+ G  H++A+   +S        
Sbjct: 860 GTVWTWGRNIYGQLGDGSTTERSLPVQVIGLTDVIAIAGGYYHTIAL---KSDGA----- 911

Query: 341 GIVSWGWNRSSQLGRMGPDNVPLVVEGLE 369
            + +WG+N ++QLG     N    V  L 
Sbjct: 912 -VWAWGYNGNNQLGNWSTKNSSTPVRSLR 939



 Score =  103 bits (258), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 100/340 (29%), Positives = 161/340 (47%), Gaps = 46/340 (13%)

Query: 49  VGGDAY--EPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRAT 106
           +GG +Y  E T +P      + +SAG YH+L +  +GAVW WG N   QLG  +  +R+T
Sbjct: 131 IGGISYGSETTFIP-----RSQISAGAYHTLTLKPDGAVWTWGANWNGQLGDESTTNRST 185

Query: 107 WNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRV 166
              P +V GL  V   A  A   +  A+  DG++W WG ++ GQLG G   T+   P +V
Sbjct: 186 ---PVQVSGLTDVIAIAGGAYHTI--ALKSDGTVWAWGNNEGGQLGDGS-TTDRSTPVQV 239

Query: 167 EALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSP-----LDSNID 221
             L    ++ ++ G+ H +A   DG ++ WG +  GR+G+      S P     L   I 
Sbjct: 240 SGL--TDVIAIAGGYAHTIALKSDGTVWAWGDNEGGRLGDGSTTNRSIPVKVGGLSDVIA 297

Query: 222 RSSESDQEI---SSSTI----EKAQKLVSEGMEKEKYMPIIWEPFLVEGV-EVVDIACGF 273
            +  +   I   S  T+    +     + +G    +  P+      V G+ +V+ IA G+
Sbjct: 298 IAGGNAHTIALKSDGTVWAWGDNEGGQLGDGSTTNRSTPV-----KVSGLADVIAIAGGY 352

Query: 274 DHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDIN--FHPVSISSGLGHSLAICEVR 331
            H++VL  +G + + G N  GQLG         PV ++     ++I+ G+ H++A   V+
Sbjct: 353 SHTIVLRSDGTVWTWGHNEGGQLGDGSTTNRSTPVQVSGLADVIAIAGGVYHTIA---VK 409

Query: 332 SSNVTGGARGIVSWGWNRSSQLGRMGPDN--VPLVVEGLE 369
           S         + +WG+N   QLG     N   P+ V GL 
Sbjct: 410 SDGT------MWAWGYNWYGQLGDGTTINSSTPVQVNGLT 443



 Score =  102 bits (253), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 87/316 (27%), Positives = 153/316 (48%), Gaps = 28/316 (8%)

Query: 55   EPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVE 114
             P +V GL +DV +++ G YH++A+ ++  VWAWG N+  QLG G + +R+    P  V 
Sbjct: 1081 TPVQVSGL-TDVIAIAGGDYHTIALKSDNTVWAWGSNSYGQLGDGTITNRSI---PTPVT 1136

Query: 115  GLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKI 174
             L   N+ A     V + A+  DG++W WG +  GQLG G   T    P +V  L    +
Sbjct: 1137 YL--TNIIAIAGGYVHTIALKSDGTVWAWGYNGYGQLGDGS-TTNRSTPVQVSGL--TDV 1191

Query: 175  VKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSN--IDRSSESDQEISS 232
            + ++  + H +A   DG ++ WGY+  G++G+      S+P+  +   D  + +   + +
Sbjct: 1192 IAIAGEYVHTVALKSDGTVWAWGYNGYGQLGDGSTTNRSTPVQVSGLTDVIAIAGGYVHT 1251

Query: 233  STIEKAQKLVSEGMEKEKYM---PII--WEPFLVEGV-EVVDIACGFDHSLVLGRNGVLL 286
              ++    + + G      +     I    P  V G+ + + IA G  H++ L  +  + 
Sbjct: 1252 IALKSDGTVWTWGWNNSGQLGDGTTINRLTPVQVSGLTDAIAIAGGDYHTIALKSDNTVW 1311

Query: 287  SCGSNVYGQLGREKQDMGMFPVDIN--FHPVSISSGLGHSLAICEVRSSNVTGGARGIVS 344
            + GSN YGQLG       + PV ++     ++I+ G  H++A+   +S N       + +
Sbjct: 1312 AWGSNSYGQLGDGTTINRLTPVQVSGLTDAIAIAGGDYHTIAL---KSDNT------VWA 1362

Query: 345  WGWNRSSQLGRMGPDN 360
            WG N   QLG +   N
Sbjct: 1363 WGSNSYGQLGDVSTAN 1378



 Score =  101 bits (251), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 91/361 (25%), Positives = 161/361 (44%), Gaps = 76/361 (21%)

Query: 52   DAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPK 111
            D   P +V GL +D+ +++ G+ H++A+ ++G VWAWG N   QLG G   + +T   P 
Sbjct: 780  DHLTPVQVSGL-TDIIAIAGGYIHTIALKSDGTVWAWGHNEGGQLGDGTTTNSST---PV 835

Query: 112  RVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAG 171
            +V GL   +V A  A    + A+  DG++W WG++  GQLG G   TE  +P +V  L  
Sbjct: 836  QVSGL--TDVIAVTARLYHTIALKSDGTVWTWGRNIYGQLGDGS-TTERSLPVQVIGL-- 890

Query: 172  EKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDS-NIDRSSESDQEI 230
              ++ ++ G+ H +A   DG ++ WGY+ + ++GN      S+P+ S   D +S +   +
Sbjct: 891  TDVIAIAGGYYHTIALKSDGAVWAWGYNGNNQLGNWSTKNSSTPVRSLRYDMNSVTTPAV 950

Query: 231  ---SSSTIEKAQKLVSEGMEKEKYMPIIWEPF---------------------------- 259
               S++ +  +  L++  ++  +     W  +                            
Sbjct: 951  ITGSTTCVSLSSVLLNGWVDGNRAATTAWFDYGTSSGVYFDTTATIPCGTSSAYISATLG 1010

Query: 260  -------------------LVEGVEVV-----DIACGFDHSLVLGRNGVLLSCGSNVYGQ 295
                               +  G E +      I+ G  H+L L  +G + +CG+N  GQ
Sbjct: 1011 SLTPWTTYYYRIAAQNSRGISYGSETIFLPRSQISAGAYHTLTLKPDGTVWACGANWNGQ 1070

Query: 296  LGREKQDMGMFPVDIN--FHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQL 353
            LG         PV ++     ++I+ G  H++A+   +S N       + +WG N   QL
Sbjct: 1071 LGDGTTINRSTPVQVSGLTDVIAIAGGDYHTIAL---KSDNT------VWAWGSNSYGQL 1121

Query: 354  G 354
            G
Sbjct: 1122 G 1122



 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 82/291 (28%), Positives = 142/291 (48%), Gaps = 28/291 (9%)

Query: 56   PTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEG 115
            PT V  L +++ +++ G+ H++A+ ++G VWAWG N   QLG G+  +R+T   P +V G
Sbjct: 1132 PTPVTYL-TNIIAIAGGYVHTIALKSDGTVWAWGYNGYGQLGDGSTTNRST---PVQVSG 1187

Query: 116  LDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIV 175
            L   +V A     V + A+  DG++W WG +  GQLG G   T    P +V  L    ++
Sbjct: 1188 L--TDVIAIAGEYVHTVALKSDGTVWAWGYNGYGQLGDGS-TTNRSTPVQVSGL--TDVI 1242

Query: 176  KVSFGWGHALAQTEDGKLFGWGYSADGRIG-----NLGKALESSPLDSNIDRSSESDQEI 230
             ++ G+ H +A   DG ++ WG++  G++G     N    ++ S L   I  +      I
Sbjct: 1243 AIAGGYVHTIALKSDGTVWTWGWNNSGQLGDGTTINRLTPVQVSGLTDAIAIAGGDYHTI 1302

Query: 231  ---SSSTI----EKAQKLVSEGMEKEKYMPIIWEPFLVEGV-EVVDIACGFDHSLVLGRN 282
               S +T+      +   + +G    +  P+      V G+ + + IA G  H++ L  +
Sbjct: 1303 ALKSDNTVWAWGSNSYGQLGDGTTINRLTPV-----QVSGLTDAIAIAGGDYHTIALKSD 1357

Query: 283  GVLLSCGSNVYGQLGREKQDMGMFPVDINFHPVSISSGLGHSLAICEVRSS 333
              + + GSN YGQLG       + P      P+ +S+G   ++    VRS+
Sbjct: 1358 NTVWAWGSNSYGQLGDVSTANSLTPAQCLLSPI-VSTGTAINIGTTMVRST 1407



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 91/319 (28%), Positives = 153/319 (47%), Gaps = 41/319 (12%)

Query: 69   VSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASG 128
            +SAG YH+L +  +G VWA G N   QLG G   +R+T   P +V GL  V    A A G
Sbjct: 1044 ISAGAYHTLTLKPDGTVWACGANWNGQLGDGTTINRST---PVQVSGLTDV---IAIAGG 1097

Query: 129  VVSS-AIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQ 187
               + A+  D ++W WG +  GQLG G  IT   +P+ V  L    I+ ++ G+ H +A 
Sbjct: 1098 DYHTIALKSDNTVWAWGSNSYGQLGDGT-ITNRSIPTPVTYL--TNIIAIAGGYVHTIAL 1154

Query: 188  TEDGKLFGWGYSADGRIGNLGKALESSPLDSN--IDRSSESDQEISSSTIEKAQKL---- 241
              DG ++ WGY+  G++G+      S+P+  +   D  + + + + +  ++    +    
Sbjct: 1155 KSDGTVWAWGYNGYGQLGDGSTTNRSTPVQVSGLTDVIAIAGEYVHTVALKSDGTVWAWG 1214

Query: 242  ------VSEGMEKEKYMPIIWEPFLVEGV-EVVDIACGFDHSLVLGRNGVLLSCGSNVYG 294
                  + +G    +  P+      V G+ +V+ IA G+ H++ L  +G + + G N  G
Sbjct: 1215 YNGYGQLGDGSTTNRSTPV-----QVSGLTDVIAIAGGYVHTIALKSDGTVWTWGWNNSG 1269

Query: 295  QLGREKQDMGMFPVDIN--FHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQ 352
            QLG       + PV ++     ++I+ G  H++A+   +S N       + +WG N   Q
Sbjct: 1270 QLGDGTTINRLTPVQVSGLTDAIAIAGGDYHTIAL---KSDNT------VWAWGSNSYGQ 1320

Query: 353  LGRMGPDN--VPLVVEGLE 369
            LG     N   P+ V GL 
Sbjct: 1321 LGDGTTINRLTPVQVSGLT 1339



 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 97/376 (25%), Positives = 162/376 (43%), Gaps = 80/376 (21%)

Query: 55  EPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVE 114
            P +V GL +DV +++ G+ H++ + ++G VW WG N   QLG G+  +R+T   P +V 
Sbjct: 335 TPVKVSGL-ADVIAIAGGYSHTIVLRSDGTVWTWGHNEGGQLGDGSTTNRST---PVQVS 390

Query: 115 GLDQVNVCAAFASGVVSS-AIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEK 173
           GL  V    A A GV  + A+  DG++W WG +  GQLG G  I  +  P +V  L    
Sbjct: 391 GLADV---IAIAGGVYHTIAVKSDGTMWAWGYNWYGQLGDGTTINSS-TPVQVNGL--TD 444

Query: 174 IVKVSFGWGHALAQTEDGKLFGWGYSADGRIGN--------------------------- 206
           ++ ++ G+ H +A   DG ++ WG++  G++G+                           
Sbjct: 445 VIAIAGGYYHTIAMKSDGAVWTWGFNYYGQLGDGSITNRSTPAQRSLSGMKSVATPTVTT 504

Query: 207 -------LGKALESSPLDSN-IDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPII--- 255
                  L  AL +  ++ N +  ++  D   S+     A K +S G         +   
Sbjct: 505 GSATCVSLSSALLNGWVNGNGVATTAWFDYGTSTGMYFDATKTISCGTGSTYVGATLGDL 564

Query: 256 --WEPF-----------LVEGVEV-----VDIACGFDHSLVLGRNGVLLSCGSNVYGQLG 297
             W  +           +  G E        I+ G  H+L L  +G + + G+N   QLG
Sbjct: 565 TPWTTYYCRIASQNIGGIYYGSETTFMPRTQISAGAYHTLTLKPDGTVWAYGANWNSQLG 624

Query: 298 REKQDMGMFPVDIN--FHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGR 355
                    PV ++     ++I+ G+ H++A+   +S         + +WGWN S QLG 
Sbjct: 625 DGSTTDSSTPVQVSGLTDAIAIAGGVYHTIAL---KSDGT------VWTWGWNNSGQLGD 675

Query: 356 MGPDN--VPLVVEGLE 369
               N   P+ V GL 
Sbjct: 676 GTTINRSTPVQVIGLT 691



 Score = 94.4 bits (233), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 90/329 (27%), Positives = 145/329 (44%), Gaps = 74/329 (22%)

Query: 49  VGGDAY--EPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRAT 106
           +GG  Y  E T +P      T +SAG YH+L +  +G VWA+G N   QLG G+    +T
Sbjct: 579 IGGIYYGSETTFMP-----RTQISAGAYHTLTLKPDGTVWAYGANWNSQLGDGSTTDSST 633

Query: 107 WNDPKRVEGLDQVNVCAAFASGVVSS-AIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSR 165
              P +V GL       A A GV  + A+  DG++W WG +  GQLG G  I  +   + 
Sbjct: 634 ---PVQVSGLTD---AIAIAGGVYHTIALKSDGTVWTWGWNNSGQLGDGTTINRS---TP 684

Query: 166 VEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSE 225
           V+ +    ++ ++ G  H +A   DG ++ WG++  G++G       S+P+         
Sbjct: 685 VQVIGLTDVIAIAGGDYHTIALKSDGTVWTWGFNYYGQLGGGATTNRSTPVQ-------- 736

Query: 226 SDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGV-EVVDIACGFDHSLVLGRNGV 284
                                              V+G+ +++ IA G+ HS+ L  +G 
Sbjct: 737 -----------------------------------VKGLADIIAIAGGYVHSIALKSDGT 761

Query: 285 LLSCGSNVYGQLGREKQDMGMFPVDIN--FHPVSISSGLGHSLAICEVRSSNVTGGARGI 342
           + + G N YGQLG       + PV ++     ++I+ G  H++A+   +S         +
Sbjct: 762 VWAWGYNGYGQLGDGSTTDHLTPVQVSGLTDIIAIAGGYIHTIAL---KSDGT------V 812

Query: 343 VSWGWNRSSQLGRMGPDN--VPLVVEGLE 369
            +WG N   QLG     N   P+ V GL 
Sbjct: 813 WAWGHNEGGQLGDGTTTNSSTPVQVSGLT 841



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 53/162 (32%), Positives = 86/162 (53%), Gaps = 11/162 (6%)

Query: 55   EPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVE 114
             P +V GL +DV +++ G+ H++A+ ++G VW WG NN  QLG G   +R T   P +V 
Sbjct: 1231 TPVQVSGL-TDVIAIAGGYVHTIALKSDGTVWTWGWNNSGQLGDGTTINRLT---PVQVS 1286

Query: 115  GLDQVNVCAAFASGVVSS-AIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEK 173
            GL       A A G   + A+  D ++W WG +  GQLG G  I   + P +V  L    
Sbjct: 1287 GLTD---AIAIAGGDYHTIALKSDNTVWAWGSNSYGQLGDGTTINR-LTPVQVSGL--TD 1340

Query: 174  IVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSP 215
             + ++ G  H +A   D  ++ WG ++ G++G++  A   +P
Sbjct: 1341 AIAIAGGDYHTIALKSDNTVWAWGSNSYGQLGDVSTANSLTP 1382



 Score = 65.5 bits (158), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 87/380 (22%), Positives = 154/380 (40%), Gaps = 88/380 (23%)

Query: 55  EPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVE 114
            P +V GL +DV +++ G+YH++A+ ++GAVW WG N   QLG G++ +R+T    + + 
Sbjct: 435 TPVQVNGL-TDVIAIAGGYYHTIAMKSDGAVWTWGFNYYGQLGDGSITNRST-PAQRSLS 492

Query: 115 GLDQV---------NVCAAFASGVVSSAIGDDG---SLWV-WGKSKRGQLGLGKDITEAI 161
           G+  V           C + +S +++  +  +G   + W  +G S        K I+   
Sbjct: 493 GMKSVATPTVTTGSATCVSLSSALLNGWVNGNGVATTAWFDYGTSTGMYFDATKTISCGT 552

Query: 162 VPSRVEALAGEKI----------------------------VKVSFGWGHALAQTEDGKL 193
             + V A  G+                               ++S G  H L    DG +
Sbjct: 553 GSTYVGATLGDLTPWTTYYCRIASQNIGGIYYGSETTFMPRTQISAGAYHTLTLKPDGTV 612

Query: 194 FGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMP 253
           + +G + + ++G+      S+P    +  S  +D    +  +     L S+G        
Sbjct: 613 WAYGANWNSQLGDGSTTDSSTP----VQVSGLTDAIAIAGGVYHTIALKSDGT------- 661

Query: 254 IIW-------------------EPFLVEGV-EVVDIACGFDHSLVLGRNGVLLSCGSNVY 293
            +W                    P  V G+ +V+ IA G  H++ L  +G + + G N Y
Sbjct: 662 -VWTWGWNNSGQLGDGTTINRSTPVQVIGLTDVIAIAGGDYHTIALKSDGTVWTWGFNYY 720

Query: 294 GQLGREKQDMGMFPVDIN--FHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSS 351
           GQLG         PV +      ++I+ G  HS+A+   +S         + +WG+N   
Sbjct: 721 GQLGGGATTNRSTPVQVKGLADIIAIAGGYVHSIAL---KSDGT------VWAWGYNGYG 771

Query: 352 QLGRMGPDN--VPLVVEGLE 369
           QLG     +   P+ V GL 
Sbjct: 772 QLGDGSTTDHLTPVQVSGLT 791



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 90/374 (24%), Positives = 153/374 (40%), Gaps = 78/374 (20%)

Query: 56   PTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEG 115
            P +V GL +DV +++ G+YH++A+ ++GAVWAWG N   QLG  + ++ +T   P R   
Sbjct: 884  PVQVIGL-TDVIAIAGGYYHTIALKSDGAVWAWGYNGNNQLGNWSTKNSST---PVRSLR 939

Query: 116  LDQVNV-----------CAAFASGVVSSAI-GDDGSLWVWGKSKRGQLGLGKDITEAIVP 163
             D  +V           C + +S +++  + G+  +   W        G+  D T A +P
Sbjct: 940  YDMNSVTTPAVITGSTTCVSLSSVLLNGWVDGNRAATTAWFDYGTSS-GVYFD-TTATIP 997

Query: 164  -----------------------------SRVEALAGEKIV----KVSFGWGHALAQTED 190
                                         SR  +   E I     ++S G  H L    D
Sbjct: 998  CGTSSAYISATLGSLTPWTTYYYRIAAQNSRGISYGSETIFLPRSQISAGAYHTLTLKPD 1057

Query: 191  GKLFGWGYSADGRIGNLGKALESSPLD----SNIDRSSESDQEI----SSSTI----EKA 238
            G ++  G + +G++G+      S+P+     +++   +  D       S +T+      +
Sbjct: 1058 GTVWACGANWNGQLGDGTTINRSTPVQVSGLTDVIAIAGGDYHTIALKSDNTVWAWGSNS 1117

Query: 239  QKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGR 298
               + +G    + +P    P       ++ IA G+ H++ L  +G + + G N YGQLG 
Sbjct: 1118 YGQLGDGTITNRSIP---TPVTYL-TNIIAIAGGYVHTIALKSDGTVWAWGYNGYGQLGD 1173

Query: 299  EKQDMGMFPVDINFHPVSISSGLGHSLAICEVRSSNVTGGARGIV-SWGWNRSSQLGRMG 357
                    PV +        SGL   +AI       V   + G V +WG+N   QLG   
Sbjct: 1174 GSTTNRSTPVQV--------SGLTDVIAIAGEYVHTVALKSDGTVWAWGYNGYGQLGDGS 1225

Query: 358  PDN--VPLVVEGLE 369
              N   P+ V GL 
Sbjct: 1226 TTNRSTPVQVSGLT 1239


>gi|145597074|ref|YP_001161371.1| hypothetical protein Strop_4565 [Salinispora tropica CNB-440]
 gi|145306411|gb|ABP56993.1| hypothetical protein Strop_4565 [Salinispora tropica CNB-440]
          Length = 477

 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 105/340 (30%), Positives = 145/340 (42%), Gaps = 68/340 (20%)

Query: 22  RSASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLP--SDVTSVSAGHYHSLAV 79
           R AS T V+++GD   G LG      G   D+  P  V  LP  + +T+++AGH HSLAV
Sbjct: 68  RDASDT-VLAWGDNKDGELG-----DGTTTDSSTPIAV-DLPAGTTITAIAAGHDHSLAV 120

Query: 80  TNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGS 139
           T+ G   AWG N   QLG G+    +T   P  V+      V A  A    S A+   G+
Sbjct: 121 TSAGTALAWGNNLFGQLGDGSTTDSST---PIAVDLPAGTTVTAIAAGDDHSLAVTSAGT 177

Query: 140 LWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYS 199
              WG + RG+LG G   T    P  V+  AG  +  ++ G GH+LA T  G +  WG +
Sbjct: 178 ALAWGDNDRGELGDGT-TTRRDTPVDVDLPAGTTVTAIAAGIGHSLALTSAGTVLTWGLN 236

Query: 200 ADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPF 259
           +DG++G                                      +G   +   PI  +  
Sbjct: 237 SDGQLG--------------------------------------DGTTTDSSTPIAVD-- 256

Query: 260 LVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFHPVS--- 316
           L  G  V  IA G  HSL +   G +L+ G+N  GQLG         P+ +N  P S   
Sbjct: 257 LPAGTTVTAIAAGSLHSLAVTTAGTILAWGNNSDGQLGDGTTTNSSTPIAVNL-PASTTI 315

Query: 317 --ISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLG 354
             I  G  HSLA+    S+         ++WG N   QLG
Sbjct: 316 TAIDGGRDHSLAVTSAGSA---------LAWGDNDDGQLG 346



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 76/262 (29%), Positives = 119/262 (45%), Gaps = 22/262 (8%)

Query: 66  VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAF 125
           VT+++AG  HSLAVT+ G   AWG N+  +LG G    R T   P  V+ L       A 
Sbjct: 159 VTAIAAGDDHSLAVTSAGTALAWGDNDRGELGDGTTTRRDT---PVDVD-LPAGTTVTAI 214

Query: 126 ASGVVSS-AIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHA 184
           A+G+  S A+   G++  WG +  GQLG G   T++  P  V+  AG  +  ++ G  H+
Sbjct: 215 AAGIGHSLALTSAGTVLTWGLNSDGQLGDGT-TTDSSTPIAVDLPAGTTVTAIAAGSLHS 273

Query: 185 LAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSE-------SDQEISSSTIEK 237
           LA T  G +  WG ++DG++G+      S+P+  N+  S+         D  ++ ++   
Sbjct: 274 LAVTTAGTILAWGNNSDGQLGDGTTTNSSTPIAVNLPASTTITAIDGGRDHSLAVTSAGS 333

Query: 238 A-------QKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGS 290
           A          + +G       PI     L     V     G  HSL +   G +L+ G+
Sbjct: 334 ALAWGDNDDGQLGDGTTTNSSTPIAVN--LPADTTVTATTAGSLHSLAVTTAGTILAWGN 391

Query: 291 NVYGQLGREKQDMGMFPVDINF 312
           N  G+LG         P+ +N 
Sbjct: 392 NSDGRLGDGTTTNSSTPIAVNL 413



 Score = 75.1 bits (183), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 65/194 (33%), Positives = 93/194 (47%), Gaps = 12/194 (6%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLP--SDVTSVSAGHYHSLAVTNNGAVW 86
           V+++G  S G LG      G   D+  P  V  LP  + VT+++AG  HSLAVT  G + 
Sbjct: 230 VLTWGLNSDGQLG-----DGTTTDSSTPIAV-DLPAGTTVTAIAAGSLHSLAVTTAGTIL 283

Query: 87  AWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKS 146
           AWG N++ QLG G   + +T   P  V       + A       S A+   GS   WG +
Sbjct: 284 AWGNNSDGQLGDGTTTNSST---PIAVNLPASTTITAIDGGRDHSLAVTSAGSALAWGDN 340

Query: 147 KRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGN 206
             GQLG G   T +  P  V   A   +   + G  H+LA T  G +  WG ++DGR+G+
Sbjct: 341 DDGQLGDGT-TTNSSTPIAVNLPADTTVTATTAGSLHSLAVTTAGTILAWGNNSDGRLGD 399

Query: 207 LGKALESSPLDSNI 220
                 S+P+  N+
Sbjct: 400 GTTTNSSTPIAVNL 413


>gi|357147842|ref|XP_003574510.1| PREDICTED: E3 ubiquitin-protein ligase HERC2-like [Brachypodium
           distachyon]
          Length = 389

 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 62/166 (37%), Positives = 97/166 (58%), Gaps = 4/166 (2%)

Query: 56  PTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEG 115
           P RV GL   V  ++ G +H+LA++ +  +WAWG N   QLG G  + R   + P RVEG
Sbjct: 193 PVRVQGL-EKVMMIAVGAFHNLALSEDAVLWAWGNNEYGQLGIGDTQPR---SQPIRVEG 248

Query: 116 LDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIV 175
           L  +++    A G  S+A+  DG ++ WG+ + G+LG G D +  +VP +V+ L GE IV
Sbjct: 249 LSGLSLVDIAAGGWHSTALTKDGEVYAWGRGEHGRLGFGDDKSSHMVPLKVQLLDGEDIV 308

Query: 176 KVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNID 221
           +VS G  H++A T DG++F +G    GR+G   K     P++  ++
Sbjct: 309 QVSCGGTHSVALTSDGRIFSYGRGDHGRLGYGRKVTTGHPMEVPLN 354



 Score = 95.9 bits (237), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 97/311 (31%), Positives = 141/311 (45%), Gaps = 37/311 (11%)

Query: 84  AVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVW 143
           AV AWG   + QLG G  + +  W    RV  LD   V A  A    S AI DDG L+ W
Sbjct: 9   AVLAWGSGEDGQLGMGGCDEK-DWA--HRVAALDPYAVSAVVAGSRNSLAICDDGRLFTW 65

Query: 144 GKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGR 203
           G ++RG LG   +      P+ VEALAG KIV+ + G  H LA  + G+ + WG +  G+
Sbjct: 66  GWNQRGTLGHPPETKTESSPAPVEALAGVKIVQAAIGGWHCLAVDDKGRAYAWGGNEYGQ 125

Query: 204 IGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEK-------------EK 250
            G   +  E       + R   + Q  +     K Q++ + G                + 
Sbjct: 126 CGEEPERKEDG--TRALRRDIPTPQRCALKL--KVQQVAAGGTHSVVLTQEGHVWTWGQP 181

Query: 251 YMP----IIWEPFLVEGVE-VVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGM 305
           + P     I  P  V+G+E V+ IA G  H+L L  + VL + G+N YGQLG        
Sbjct: 182 WPPGDIKQISTPVRVQGLEKVMMIAVGAFHNLALSEDAVLWAWGNNEYGQLGIGDTQPRS 241

Query: 306 FPVDIN----FHPVSISSGLGHSLAICEVRSSNVTG-GARGIVSWGWNRSSQLGRMGPDN 360
            P+ +        V I++G  HS A+ +       G G  G + +G ++SS +       
Sbjct: 242 QPIRVEGLSGLSLVDIAAGGWHSTALTKDGEVYAWGRGEHGRLGFGDDKSSHM------- 294

Query: 361 VPLVVEGLEGE 371
           VPL V+ L+GE
Sbjct: 295 VPLKVQLLDGE 305



 Score = 94.4 bits (233), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 79/271 (29%), Positives = 124/271 (45%), Gaps = 52/271 (19%)

Query: 52  DAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPK 111
           D   P R   L   V  V+AG  HS+ +T  G VW WG+        G ++  +T   P 
Sbjct: 143 DIPTPQRC-ALKLKVQQVAAGGTHSVVLTQEGHVWTWGQ----PWPPGDIKQIST---PV 194

Query: 112 RVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAG 171
           RV+GL++V + A  A    + A+ +D  LW WG ++ GQLG+G D      P RVE L+G
Sbjct: 195 RVQGLEKVMMIAVGA--FHNLALSEDAVLWAWGNNEYGQLGIG-DTQPRSQPIRVEGLSG 251

Query: 172 EKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEIS 231
             +V ++ G  H+ A T+DG+++ WG    GR+G                     D + S
Sbjct: 252 LSLVDIAAGGWHSTALTKDGEVYAWGRGEHGRLGF-------------------GDDKSS 292

Query: 232 SSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSN 291
                K Q                    L++G ++V ++CG  HS+ L  +G + S G  
Sbjct: 293 HMVPLKVQ--------------------LLDGEDIVQVSCGGTHSVALTSDGRIFSYGRG 332

Query: 292 VYGQLGREKQDMGMFPVDI--NFHPVSISSG 320
            +G+LG  ++     P+++  N  P   S+G
Sbjct: 333 DHGRLGYGRKVTTGHPMEVPLNLPPPKTSAG 363


>gi|225451993|ref|XP_002283479.1| PREDICTED: E3 ubiquitin-protein ligase HERC2 [Vitis vinifera]
 gi|296087299|emb|CBI33673.3| unnamed protein product [Vitis vinifera]
          Length = 395

 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 66/190 (34%), Positives = 104/190 (54%), Gaps = 4/190 (2%)

Query: 56  PTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEG 115
           P RV GL   V  ++ G +H+LA+  +G +WAWG N   QLG G  + R+    P  V+G
Sbjct: 191 PVRVQGL-EKVRLIAVGAFHNLALLEDGILWAWGNNEYGQLGTGDTQPRS---QPIAVQG 246

Query: 116 LDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIV 175
           L  + +    A G  S+A+ DDG ++ WG+ + G+LG G D +  +VP +V+ L  E IV
Sbjct: 247 LSDLTLVDIAAGGWHSTALTDDGGVYGWGRGEHGRLGFGDDKSSKMVPQKVQLLVEENIV 306

Query: 176 KVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTI 235
           ++S G  H++A T DG++F +G    GR+G   K     P++  I+    ++   S +  
Sbjct: 307 QISCGGTHSVALTRDGRMFSFGRGDHGRLGYGRKVTTGHPMEVPINLPPATNLSGSGAGG 366

Query: 236 EKAQKLVSEG 245
               KLV+ G
Sbjct: 367 HWCSKLVACG 376



 Score = 94.4 bits (233), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 90/293 (30%), Positives = 129/293 (44%), Gaps = 57/293 (19%)

Query: 66  VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAF 125
           V  V+AG  HS+ +T  G VW WG+        G ++  +T   P RV+GL++V + A  
Sbjct: 154 VRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQIST---PVRVQGLEKVRLIAVG 206

Query: 126 ASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHAL 185
           A    + A+ +DG LW WG ++ GQLG G D      P  V+ L+   +V ++ G  H+ 
Sbjct: 207 A--FHNLALLEDGILWAWGNNEYGQLGTG-DTQPRSQPIAVQGLSDLTLVDIAAGGWHST 263

Query: 186 AQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEG 245
           A T+DG ++GWG    GR+G                     D + S    +K Q LV E 
Sbjct: 264 ALTDDGGVYGWGRGEHGRLGF-------------------GDDKSSKMVPQKVQLLVEE- 303

Query: 246 MEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGM 305
                               +V I+CG  HS+ L R+G + S G   +G+LG  ++    
Sbjct: 304 -------------------NIVQISCGGTHSVALTRDGRMFSFGRGDHGRLGYGRKVTTG 344

Query: 306 FP--VDINFHPVSISSGLGHSLAICEVRSSNVTGGAR---GIVSWGWNRSSQL 353
            P  V IN  P +  SG G     C   S  V  G R    IV W  +   QL
Sbjct: 345 HPMEVPINLPPATNLSGSGAGGHWC---SKLVACGGRHTLAIVEWLAHEPEQL 394



 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 92/308 (29%), Positives = 138/308 (44%), Gaps = 37/308 (12%)

Query: 84  AVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVW 143
           A+ +WG   + QLG G  E +  W     V+ L   NVC+  A    S AI +DG L+ W
Sbjct: 7   AIISWGSGEDGQLGIGNNEEK-EWV--CAVKALAAQNVCSVVAGSRNSLAICEDGKLFTW 63

Query: 144 GKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGR 203
           G ++RG LG   +     +PS+V+ALA  KIV+ + G  H LA  + G+ + WG +  G+
Sbjct: 64  GWNQRGTLGHPPETKTENIPSQVKALANAKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQ 123

Query: 204 IGNLGKALESS--PLDSNIDRSSESDQEISSSTIEKAQK----LVSEGMEKEKYMPI--- 254
            G   +  + +  PL  +I        ++S   +         L  EG       P    
Sbjct: 124 CGEEPERKDDTGRPLRRDITIPQRCASKLSVRQVAAGGTHSVVLTREGHVWTWGQPWPPG 183

Query: 255 ----IWEPFLVEGVEVVD-IACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVD 309
               I  P  V+G+E V  IA G  H+L L  +G+L + G+N YGQLG         P+ 
Sbjct: 184 DIKQISTPVRVQGLEKVRLIAVGAFHNLALLEDGILWAWGNNEYGQLGTGDTQPRSQPIA 243

Query: 310 I----NFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLG-------RMGP 358
           +    +   V I++G  HS A+ +           G+  WG     +LG       +M P
Sbjct: 244 VQGLSDLTLVDIAAGGWHSTALTD---------DGGVYGWGRGEHGRLGFGDDKSSKMVP 294

Query: 359 DNVPLVVE 366
             V L+VE
Sbjct: 295 QKVQLLVE 302


>gi|159037173|ref|YP_001536426.1| chromosome condensation regulator RCC1 [Salinispora arenicola
           CNS-205]
 gi|157916008|gb|ABV97435.1| regulator of chromosome condensation RCC1 [Salinispora arenicola
           CNS-205]
          Length = 569

 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 108/374 (28%), Positives = 169/374 (45%), Gaps = 46/374 (12%)

Query: 4   LKSVVHNHVNVLTSRIFMRSASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVP-GL 62
           + S +  H +V   R    + +  AV+++GD   G LG  T+      + Y    +P GL
Sbjct: 39  VSSAIAQHTSVAQHRPSPTTVASDAVLAWGDNYYGQLGDGTT------NNYRTVPIPVGL 92

Query: 63  P--SDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVN 120
           P  ++VT+ + G  HSLAVT+ G V AWGRN   QLG G   +R+T  D +   G     
Sbjct: 93  PKGTEVTAAAGGDAHSLAVTSAGTVLAWGRNAVGQLGDGTTINRSTPVDVRLPPGTTVTA 152

Query: 121 VCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFG 180
           V A F     S A+   G+++ WG +  GQLG G   T    P  V   +G  I  V+ G
Sbjct: 153 VAAGFNH---SLALTSAGTVFAWGDNSTGQLGDGTR-TNRSTPVAVSFPSGTVITAVAAG 208

Query: 181 WGHALAQTEDGKLFGWGYSADGRIGNLGKALESSP---------LDSNIDRSSESDQEIS 231
             H+LA T  G +F WG ++ G++G+  +   S+P         + + I         ++
Sbjct: 209 GMHSLALTSAGTVFAWGDNSTGQLGDGTRTNRSTPVVVGLPVGTIVTAIAGGGSHSLAVT 268

Query: 232 SSTIEKA--QKLVSE-----GMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGV 284
           S+   +A     V +      + ++  + +   P    G  V  +A G  HSL L   G 
Sbjct: 269 SAGNARAWGNNFVGQLGDGSNINRDASVHVRLPP----GTTVTAVAGGLTHSLALTSVGT 324

Query: 285 LLSCGSNVYGQLG----REKQDMGMFPVDINFHPVSISSGLGHSLAICEVRSSNVTGGAR 340
           +LS GSN +GQLG    R++   G   +       ++++G    LA+           A 
Sbjct: 325 VLSWGSNNWGQLGDGTARDRNTPGSVSLPPGVTITAVAAGDLFGLALTS---------AG 375

Query: 341 GIVSWGWNRSSQLG 354
            +++WG N   QLG
Sbjct: 376 TVLAWGGNIVGQLG 389



 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 86/301 (28%), Positives = 132/301 (43%), Gaps = 44/301 (14%)

Query: 64  SDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCA 123
           + VT+V+AG  HSLA+T+ G V+AWG N+  QLG G   +R+T   P  V       + A
Sbjct: 148 TTVTAVAAGFNHSLALTSAGTVFAWGDNSTGQLGDGTRTNRST---PVAVSFPSGTVITA 204

Query: 124 AFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGH 183
             A G+ S A+   G+++ WG +  GQLG G   T    P  V    G  +  ++ G  H
Sbjct: 205 VAAGGMHSLALTSAGTVFAWGDNSTGQLGDGTR-TNRSTPVVVGLPVGTIVTAIAGGGSH 263

Query: 184 ALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSST--------I 235
           +LA T  G    WG +  G++G+           SNI+R +     +   T        +
Sbjct: 264 SLAVTSAGNARAWGNNFVGQLGD----------GSNINRDASVHVRLPPGTTVTAVAGGL 313

Query: 236 EKAQKLVS----------------EGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVL 279
             +  L S                +G  +++  P      L  GV +  +A G    L L
Sbjct: 314 THSLALTSVGTVLSWGSNNWGQLGDGTARDRNTP--GSVSLPPGVTITAVAAGDLFGLAL 371

Query: 280 GRNGVLLSCGSNVYGQLGREKQDMGMFPVDINF----HPVSISSGLGHSLAICEVRSSNV 335
              G +L+ G N+ GQLG     +   PV  +        +I++G GHSLA+   R ++ 
Sbjct: 372 TSAGTVLAWGGNIVGQLGDGTTTVRRTPVAASLPTATTITAIATGSGHSLALVAPRPAST 431

Query: 336 T 336
           T
Sbjct: 432 T 432



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 62/195 (31%), Positives = 90/195 (46%), Gaps = 14/195 (7%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLP--SDVTSVSAGHYHSLAVTNNGAVW 86
           V ++GD S G LG      G   +   P  V GLP  + VT+++ G  HSLAVT+ G   
Sbjct: 221 VFAWGDNSTGQLG-----DGTRTNRSTPVVV-GLPVGTIVTAIAGGGSHSLAVTSAGNAR 274

Query: 87  AWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSS-AIGDDGSLWVWGK 145
           AWG N   QLG G+  +R    D      L       A A G+  S A+   G++  WG 
Sbjct: 275 AWGNNFVGQLGDGSNINR----DASVHVRLPPGTTVTAVAGGLTHSLALTSVGTVLSWGS 330

Query: 146 SKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIG 205
           +  GQLG G    +   P  V    G  I  V+ G    LA T  G +  WG +  G++G
Sbjct: 331 NNWGQLGDGT-ARDRNTPGSVSLPPGVTITAVAAGDLFGLALTSAGTVLAWGGNIVGQLG 389

Query: 206 NLGKALESSPLDSNI 220
           +    +  +P+ +++
Sbjct: 390 DGTTTVRRTPVAASL 404


>gi|405345706|ref|ZP_11022499.1| RCC1 repeat domain protein [Chondromyces apiculatus DSM 436]
 gi|397093755|gb|EJJ24452.1| RCC1 repeat domain protein [Myxococcus sp. (contaminant ex DSM
           436)]
          Length = 747

 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 104/334 (31%), Positives = 155/334 (46%), Gaps = 42/334 (12%)

Query: 52  DAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPK 111
           D   P +V G+ S V SV+AG  +SLA+  NG VWAWG N   QLG G L  RA    P+
Sbjct: 89  DKAAPVQVAGVASAV-SVAAGDQYSLALDENGDVWAWGDNASGQLGDGTLTPRA---QPR 144

Query: 112 RVEGLDQ-VNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALA 170
           RV GL Q V++ + FA  V   A+  DG++W WG ++  QLG    +T + VP  V  L+
Sbjct: 145 RVSGLTQGVSLASGFAHAV---ALRADGTVWAWGDNRSNQLG-SATLTRSPVPIPVPGLS 200

Query: 171 GEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLD-SNIDRSSESDQE 229
              IV V  G   +LA   DG ++ WG +  G++G+      ++P+  +N+D  +     
Sbjct: 201 --DIVAVVAGGSSSLALRADGTVWAWGDNRYGQLGDGTTVRRAAPVRVANLDAVTHISAG 258

Query: 230 ISSSTIEKAQKL-----------VSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLV 278
              +   +A              + +G   ++ +P+     L+   E   +  G  HSL 
Sbjct: 259 AYHALALRADGTAWAWGYNAFGQLGDGTTVQRTLPV-----LIGLTETRTVVAGNYHSLA 313

Query: 279 LGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFH-PVSISSGLGHSLAICEVRSSNVTG 337
           +  +G + + G N Y QLG         P+       V++ +G  HS+A+          
Sbjct: 314 VRTDGAVWAWGDNRYRQLGTGNLTSSAVPLHAGMTGGVTLVAGFRHSVAL---------- 363

Query: 338 GARGIV-SWGWNRSSQLG--RMGPDNVPLVVEGL 368
           GA G   SWG N   QLG     P   P+ V GL
Sbjct: 364 GADGTAWSWGDNVFGQLGDTTFQPRMAPVQVTGL 397



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 99/305 (32%), Positives = 141/305 (46%), Gaps = 36/305 (11%)

Query: 64  SDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCA 123
           ++  +V AG+YHSLAV  +GAVWAWG N   QLG G L S A    P        V + A
Sbjct: 299 TETRTVVAGNYHSLAVRTDGAVWAWGDNRYRQLGTGNLTSSAV---PLHAGMTGGVTLVA 355

Query: 124 AFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGH 183
            F   V   A+G DG+ W WG +  GQLG        + P +V  LA  +    S G  H
Sbjct: 356 GFRHSV---ALGADGTAWSWGDNVFGQLG-DTTFQPRMAPVQVTGLALGRADATS-GQLH 410

Query: 184 ALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSN---IDRSSESDQEISSSTIE---- 236
            +    +G+L+ WG +  G++GN  +   S PL  N   I   S   +  ++  ++    
Sbjct: 411 TVMLGANGRLWAWGDNNQGQLGNGTQQNSSLPLPVNLTGITSVSSGHRHTAALRLDGTVW 470

Query: 237 ----KAQKLVSEGMEKEKYMPIIWEPFLVEGVE-VVDIACGFDHSLVLGRNGVLLSCGSN 291
                    + +G   ++  P+      V G+  V  IA G  HSL L  NG +   G N
Sbjct: 471 SWGTNQYGQLGDGTRTDRSTPV-----QVPGLTGVTSIATGDYHSLALRSNGTVWGWGFN 525

Query: 292 VYGQLGREKQDMGMFPVDIN--FHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNR 349
            YGQLG         PV ++   + VSI++G GHSLA+   RS         + ++G+N 
Sbjct: 526 RYGQLGDGTTVDRTQPVQVSGLTNIVSIAAGGGHSLAL---RSDGT------VWAFGYNF 576

Query: 350 SSQLG 354
             QLG
Sbjct: 577 DGQLG 581



 Score =  101 bits (252), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 111/365 (30%), Positives = 169/365 (46%), Gaps = 66/365 (18%)

Query: 31  SFGDGSQGALG----------LPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVT 80
           ++GD +QG LG          LP +LTG+                 TSVS+GH H+ A+ 
Sbjct: 422 AWGDNNQGQLGNGTQQNSSLPLPVNLTGI-----------------TSVSSGHRHTAALR 464

Query: 81  NNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSS-AIGDDGS 139
            +G VW+WG N   QLG G    R+T   P +V GL  V    + A+G   S A+  +G+
Sbjct: 465 LDGTVWSWGTNQYGQLGDGTRTDRST---PVQVPGLTGVT---SIATGDYHSLALRSNGT 518

Query: 140 LWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYS 199
           +W WG ++ GQLG G  + +   P +V  L    IV ++ G GH+LA   DG ++ +GY+
Sbjct: 519 VWGWGFNRYGQLGDGTTV-DRTQPVQVSGL--TNIVSIAAGGGHSLALRSDGTVWAFGYN 575

Query: 200 ADGRIGNLGKALESSPLDS----NIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPII 255
            DG++GN  +     P+ +    N+   S +  ++ S  +     + + G      + + 
Sbjct: 576 FDGQLGNGTRTWTILPVQAVGLGNV--VSLAAGKMYSLALRADGTVWAWGYNASGQLGVG 633

Query: 256 WE-----PFLVEGVE-VVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFP-- 307
                  P  V G+  +  I  G  HSL L  +G + + G N  GQLG    D  + P  
Sbjct: 634 TTQGSAVPLQVSGLSAITSITAGTYHSLALRSDGWVWAWGFNFEGQLGNGTSDNRLTPGL 693

Query: 308 VDINFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPDNV----PL 363
           V    +  +I +G  HSLA   VR+         + +WG N   QLG    D V    P+
Sbjct: 694 VVSMSNATAIFAGDLHSLA---VRADGT------LWAWGLNSHGQLGT--GDTVEAWFPV 742

Query: 364 VVEGL 368
            V+GL
Sbjct: 743 QVQGL 747



 Score = 95.1 bits (235), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 86/317 (27%), Positives = 143/317 (45%), Gaps = 62/317 (19%)

Query: 56  PTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEG 115
           P +V GL       ++G  H++ +  NG +WAWG NN+ QLG G  +  ++   P  + G
Sbjct: 391 PVQVTGLALGRADATSGQLHTVMLGANGRLWAWGDNNQGQLGNGT-QQNSSLPLPVNLTG 449

Query: 116 LDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIV 175
           +  V+          ++A+  DG++W WG ++ GQLG G   T+   P +V  L G  + 
Sbjct: 450 ITSVSSGHRH-----TAALRLDGTVWSWGTNQYGQLGDGTR-TDRSTPVQVPGLTG--VT 501

Query: 176 KVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTI 235
            ++ G  H+LA   +G ++GWG++  G++G+                          +T+
Sbjct: 502 SIATGDYHSLALRSNGTVWGWGFNRYGQLGD-------------------------GTTV 536

Query: 236 EKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQ 295
           ++ Q +   G+                   +V IA G  HSL L  +G + + G N  GQ
Sbjct: 537 DRTQPVQVSGL-----------------TNIVSIAAGGGHSLALRSDGTVWAFGYNFDGQ 579

Query: 296 LGREKQDMGMFPVDINFHPVSISSGLGHSLAICEVRSSNVTGGARGIV-SWGWNRSSQL- 353
           LG   +   + PV         + GLG+ +++   +  ++   A G V +WG+N S QL 
Sbjct: 580 LGNGTRTWTILPVQ--------AVGLGNVVSLAAGKMYSLALRADGTVWAWGYNASGQLG 631

Query: 354 -GRMGPDNVPLVVEGLE 369
            G      VPL V GL 
Sbjct: 632 VGTTQGSAVPLQVSGLS 648



 Score = 91.3 bits (225), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 97/313 (30%), Positives = 141/313 (45%), Gaps = 42/313 (13%)

Query: 69  VSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASG 128
           ++ G YHSLAV + G V+AWG N   QLG G  + +A    P +V G+   +  +  A  
Sbjct: 55  LAVGQYHSLAVHSEGTVFAWGFNRLGQLGDGTTQDKAA---PVQVAGV--ASAVSVAAGD 109

Query: 129 VVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQT 188
             S A+ ++G +W WG +  GQLG G  +T    P RV  L   + V ++ G+ HA+A  
Sbjct: 110 QYSLALDENGDVWAWGDNASGQLGDGT-LTPRAQPRRVSGL--TQGVSLASGFAHAVALR 166

Query: 189 EDGKLFGWGYSADGRIGNLGKA-LESSPLDSNIDRSSESDQEI---SSSTIEKAQKLV-- 242
            DG ++ WG   D R   LG A L  SP+   +   S+    +   SSS   +A   V  
Sbjct: 167 ADGTVWAWG---DNRSNQLGSATLTRSPVPIPVPGLSDIVAVVAGGSSSLALRADGTVWA 223

Query: 243 ---------SEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVY 293
                     +G    +  P+     +     V  I+ G  H+L L  +G   + G N +
Sbjct: 224 WGDNRYGQLGDGTTVRRAAPV----RVANLDAVTHISAGAYHALALRADGTAWAWGYNAF 279

Query: 294 GQLGREKQDMGMFPVDINFHPV-SISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQ 352
           GQLG         PV I      ++ +G  HSLA+        T GA  + +WG NR  Q
Sbjct: 280 GQLGDGTTVQRTLPVLIGLTETRTVVAGNYHSLAVR-------TDGA--VWAWGDNRYRQ 330

Query: 353 L--GRMGPDNVPL 363
           L  G +    VPL
Sbjct: 331 LGTGNLTSSAVPL 343



 Score = 82.4 bits (202), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 64/146 (43%), Positives = 85/146 (58%), Gaps = 13/146 (8%)

Query: 24  ASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNG 83
           A GT V ++G  + G LG+ T+     G A  P +V GL S +TS++AG YHSLA+ ++G
Sbjct: 615 ADGT-VWAWGYNASGQLGVGTTQ----GSAV-PLQVSGL-SAITSITAGTYHSLALRSDG 667

Query: 84  AVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVW 143
            VWAWG N E QLG G  ++R T   P  V  +   N  A FA  + S A+  DG+LW W
Sbjct: 668 WVWAWGFNFEGQLGNGTSDNRLT---PGLVVSMS--NATAIFAGDLHSLAVRADGTLWAW 722

Query: 144 GKSKRGQLGLGKDITEAIVPSRVEAL 169
           G +  GQLG G D  EA  P +V+ L
Sbjct: 723 GLNSHGQLGTG-DTVEAWFPVQVQGL 747


>gi|222623048|gb|EEE57180.1| hypothetical protein OsJ_07117 [Oryza sativa Japonica Group]
          Length = 463

 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 96/347 (27%), Positives = 156/347 (44%), Gaps = 50/347 (14%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPS-DVTSVSAGHYHSLAVTNNGAVWA 87
           + S+G G  G LG      G   D + P  +  L    +T ++ G  H LAVT  G V +
Sbjct: 98  LYSWGWGDFGRLG-----HGNSSDVFNPQPIQALQGVRITQIACGDSHCLAVTVAGHVHS 152

Query: 88  WGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSK 147
           WGRN   QLG G  E       P++++  + V V    A    ++A+ +DG L+ WG  +
Sbjct: 153 WGRNQNGQLGLGNTEDSLL---PQKIQAFEGVRVKMIAAGAEHTAAVTEDGDLYGWGWGR 209

Query: 148 RGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNL 207
            G LGLG D  + ++P +V ++ G+K+V V+ GW H +  +  G ++ +G+S  G++G+ 
Sbjct: 210 YGNLGLG-DRDDRLIPEKVSSVNGQKMVLVACGWRHTITVSSSGSIYTYGWSKYGQLGHG 268

Query: 208 GKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVV 267
                  P                     K + L    + +E+ + +I   F   G E  
Sbjct: 269 DFEDHLVP--------------------HKLEALKDTTISQEEAVELI---FFFLGDEGF 305

Query: 268 DIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINF----HPVSISSGLGH 323
            +  G      L  +G L   G N +GQ+G    +    PV +NF      V ++ G  H
Sbjct: 306 RVGGGI--QWALAADGKLYGWGWNKFGQVGVGDNEDHCSPVQVNFPNEQKVVQVACGWRH 363

Query: 324 SLAICEVRSSNVTGGARGIVSWGWNRSSQLGR--MGPDNVPLVVEGL 368
           +LA+ E         A+ + SWG   S QLG   +   N+P +++ L
Sbjct: 364 TLALTE---------AKNVFSWGRGTSGQLGHGEIVDRNIPKMIDAL 401



 Score = 71.2 bits (173), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 58/221 (26%), Positives = 99/221 (44%), Gaps = 40/221 (18%)

Query: 69  VSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASG 128
           V+ G  H++ V+++G+++ +G +   QLG G  E       P ++E L    +    A  
Sbjct: 238 VACGWRHTITVSSSGSIYTYGWSKYGQLGHGDFEDHLV---PHKLEALKDTTISQEEAVE 294

Query: 129 VVSSAIGD---------------DGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEK 173
           ++   +GD               DG L+ WG +K GQ+G+G D  +   P +V     +K
Sbjct: 295 LIFFFLGDEGFRVGGGIQWALAADGKLYGWGWNKFGQVGVG-DNEDHCSPVQVNFPNEQK 353

Query: 174 IVKVSFGWGHALAQTEDGKLFGWGYSADGRIG-------NLGKALESSPLDSNIDRSSES 226
           +V+V+ GW H LA TE   +F WG    G++G       N+ K +++   D +  +  ES
Sbjct: 354 VVQVACGWRHTLALTEAKNVFSWGRGTSGQLGHGEIVDRNIPKMIDALSSDGSACKQLES 413

Query: 227 DQEISSSTI--------------EKAQKLVSEGMEKEKYMP 253
            + +  S                EKA K +  G   E ++P
Sbjct: 414 SKAVPMSAKVWVSPSERYAIVPDEKAGKGIPAGNGTETHVP 454



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 64/248 (25%), Positives = 103/248 (41%), Gaps = 29/248 (11%)

Query: 143 WGKSKRGQLGLGKDITEAIVPSRVEA----LAGEKIVKVSFGWGHALAQT-EDGKLFGWG 197
           WG+ + GQLG G D  +  VP+ + A      G     V  G  H  A + E+ +L+ WG
Sbjct: 44  WGRGEDGQLGHG-DAEDRPVPTVLTAAFDDAPGGVASVVICGADHTTAYSDEELQLYSWG 102

Query: 198 YSADGRI--GNLGKALESSPLDS----NIDRSSESDQEISSSTI--------EKAQKLVS 243
           +   GR+  GN        P+ +     I + +  D    + T+              + 
Sbjct: 103 WGDFGRLGHGNSSDVFNPQPIQALQGVRITQIACGDSHCLAVTVAGHVHSWGRNQNGQLG 162

Query: 244 EGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDM 303
            G  ++  +P   + F  EGV V  IA G +H+  +  +G L   G   YG LG   +D 
Sbjct: 163 LGNTEDSLLPQKIQAF--EGVRVKMIAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRDD 220

Query: 304 GMFPVDINFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPDN--V 361
            + P       VS  +G    L  C  R +     +  I ++GW++  QLG    ++  V
Sbjct: 221 RLIP-----EKVSSVNGQKMVLVACGWRHTITVSSSGSIYTYGWSKYGQLGHGDFEDHLV 275

Query: 362 PLVVEGLE 369
           P  +E L+
Sbjct: 276 PHKLEALK 283



 Score = 45.8 bits (107), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 56/223 (25%), Positives = 91/223 (40%), Gaps = 36/223 (16%)

Query: 174 IVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRS-SESDQEISS 232
           +V +S G  H++A    G +  WG   DG++G+ G A E  P+ + +  +  ++   ++S
Sbjct: 22  VVLISAGASHSVALLSGGVVCSWGRGEDGQLGH-GDA-EDRPVPTVLTAAFDDAPGGVAS 79

Query: 233 STIEKAQKLVSEGMEKEKYMPIIWEPF------------------LVEGVEVVDIACGFD 274
             I  A    +   E+ +     W  F                   ++GV +  IACG  
Sbjct: 80  VVICGADHTTAYSDEELQLYSWGWGDFGRLGHGNSSDVFNPQPIQALQGVRITQIACGDS 139

Query: 275 HSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDIN-FHPVS---ISSGLGHSLAICEV 330
           H L +   G + S G N  GQLG    +  + P  I  F  V    I++G  H+ A+ E 
Sbjct: 140 HCLAVTVAGHVHSWGRNQNGQLGLGNTEDSLLPQKIQAFEGVRVKMIAAGAEHTAAVTED 199

Query: 331 RSSNVTGGARGIVSWGWNRSSQLGRMGPDN--VPLVVEGLEGE 371
                      +  WGW R   LG    D+  +P  V  + G+
Sbjct: 200 GD---------LYGWGWGRYGNLGLGDRDDRLIPEKVSSVNGQ 233


>gi|242073146|ref|XP_002446509.1| hypothetical protein SORBIDRAFT_06g017130 [Sorghum bicolor]
 gi|241937692|gb|EES10837.1| hypothetical protein SORBIDRAFT_06g017130 [Sorghum bicolor]
          Length = 443

 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 99/347 (28%), Positives = 155/347 (44%), Gaps = 65/347 (18%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPS-DVTSVSAGHYHSLAVTNNGAVWA 87
           V S+G G  G LG      G   D + P  V  L    +  ++ G  H LAVT  G V +
Sbjct: 88  VYSWGWGDFGRLG-----HGNSSDVFTPQPVKALQGLKIKQIACGDSHCLAVTMAGQVQS 142

Query: 88  WGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSK 147
           WGRN   QLG G  E       P++++  + V V    A    ++A+ +DG L+ WG  +
Sbjct: 143 WGRNQNGQLGLGTTEDSLL---PQKIQAFEGVCVKMIAAGAEHTAAVTEDGDLYGWGWGR 199

Query: 148 RGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNL 207
            G LGLG D  + ++P +V ++ GEK+V V+ GW H +  ++ G L+ +G+S  G++G+ 
Sbjct: 200 YGNLGLG-DRNDRLLPEKVSSVEGEKMVLVACGWRHTITVSDSGNLYTYGWSKYGQLGH- 257

Query: 208 GKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVV 267
                              D E           LV   +E  K   I             
Sbjct: 258 ------------------GDFE---------DHLVPHKLEALKDSTI------------S 278

Query: 268 DIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINF---HPVS-ISSGLGH 323
            I+ G+ H++ L   G L   G N +GQ+G    D    PV ++F     +S ++ G  H
Sbjct: 279 QISGGWRHTMALTSEGKLYGWGWNKFGQVGVGNNDDHCSPVQVHFPEDQKISQVACGWRH 338

Query: 324 SLAICEVRSSNVTGGARGIVSWGWNRSSQL--GRMGPDNVPLVVEGL 368
           +LA+ E ++         + SWG   S QL  G +   N P++++ L
Sbjct: 339 TLALSEKKN---------VFSWGRGTSGQLGNGEIVDRNTPVLIDAL 376



 Score = 89.4 bits (220), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 84/313 (26%), Positives = 139/313 (44%), Gaps = 38/313 (12%)

Query: 63  PSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVC 122
           P  V  VSAG  HS+A+     + +WGR  + QLG G  E R     P  + G D   + 
Sbjct: 13  PQTVVLVSAGASHSVALLTGNVLCSWGRGEDGQLGHGDAEDRLV---PTVLSGFDAPGIT 69

Query: 123 AAFASGVVSSAIGDDG-SLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGW 181
           +       ++A  +D   ++ WG    G+LG G   ++   P  V+AL G KI +++ G 
Sbjct: 70  SVICGADHTTAYSEDELQVYSWGWGDFGRLGHGNS-SDVFTPQPVKALQGLKIKQIACGD 128

Query: 182 GHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKL 241
            H LA T  G++  WG + +G++G LG   E S L   I        ++ ++  E    +
Sbjct: 129 SHCLAVTMAGQVQSWGRNQNGQLG-LGTT-EDSLLPQKIQAFEGVCVKMIAAGAEHTAAV 186

Query: 242 VSE----------------GMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVL 285
             +                G   ++ +P   +   VEG ++V +ACG+ H++ +  +G L
Sbjct: 187 TEDGDLYGWGWGRYGNLGLGDRNDRLLPE--KVSSVEGEKMVLVACGWRHTITVSDSGNL 244

Query: 286 LSCGSNVYGQLGREKQDMGMFPVDINFHPVS----ISSGLGHSLAICEVRSSNVTGGARG 341
            + G + YGQLG    +  + P  +     S    IS G  H++A+              
Sbjct: 245 YTYGWSKYGQLGHGDFEDHLVPHKLEALKDSTISQISGGWRHTMALTSEGK--------- 295

Query: 342 IVSWGWNRSSQLG 354
           +  WGWN+  Q+G
Sbjct: 296 LYGWGWNKFGQVG 308



 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 63/241 (26%), Positives = 96/241 (39%), Gaps = 61/241 (25%)

Query: 140 LWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDG-KLFGWGY 198
           L  WG+ + GQLG G D  + +VP+ +       I  V  G  H  A +ED  +++ WG+
Sbjct: 35  LCSWGRGEDGQLGHG-DAEDRLVPTVLSGFDAPGITSVICGADHTTAYSEDELQVYSWGW 93

Query: 199 SADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEP 258
              GR+G+                                      G   + + P   +P
Sbjct: 94  GDFGRLGH--------------------------------------GNSSDVFTP---QP 112

Query: 259 F-LVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDIN-FHPVS 316
              ++G+++  IACG  H L +   G + S G N  GQLG    +  + P  I  F  V 
Sbjct: 113 VKALQGLKIKQIACGDSHCLAVTMAGQVQSWGRNQNGQLGLGTTEDSLLPQKIQAFEGVC 172

Query: 317 ---ISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPDN---VPLVVEGLEG 370
              I++G  H+ A+ E            +  WGW R   LG +G  N   +P  V  +EG
Sbjct: 173 VKMIAAGAEHTAAVTEDGD---------LYGWGWGRYGNLG-LGDRNDRLLPEKVSSVEG 222

Query: 371 E 371
           E
Sbjct: 223 E 223


>gi|302808359|ref|XP_002985874.1| hypothetical protein SELMODRAFT_182077 [Selaginella moellendorffii]
 gi|300146381|gb|EFJ13051.1| hypothetical protein SELMODRAFT_182077 [Selaginella moellendorffii]
          Length = 394

 Score =  109 bits (272), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 64/177 (36%), Positives = 99/177 (55%), Gaps = 4/177 (2%)

Query: 56  PTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEG 115
           P RV GL  +VT ++ G +H+LA+  +G VWAWG N   QLG G  + R++   P  V+G
Sbjct: 194 PVRVQGL-ENVTMIAVGAFHNLALVQHGEVWAWGNNEYGQLGTGDTQPRSS---PVPVKG 249

Query: 116 LDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIV 175
           L  + +    A G  S A+  DG+++ WG+ + G+LG G D +  ++P +V  LAGE +V
Sbjct: 250 LTGLVLVDIAAGGWHSMALTPDGAVYGWGRGEHGRLGFGDDKSSKMLPQKVHLLAGEPVV 309

Query: 176 KVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISS 232
           +VS G  H++A T  G++F +G    GR+G  G      P++  +     S   I S
Sbjct: 310 QVSCGGTHSVAATISGRMFSFGRGDHGRLGYSGAVTTGHPVEVPVSLHHYSRHNIVS 366



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 80/266 (30%), Positives = 117/266 (43%), Gaps = 25/266 (9%)

Query: 84  AVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVW 143
            V AWG   + QLG G L+ +   +    V+ L   NV +  A    S AI +DG L+ W
Sbjct: 6   CVLAWGAGEDGQLGLGNLQDK---DSVCVVDALRDHNVVSVVAGSRNSLAICEDGRLFTW 62

Query: 144 GKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGR 203
           G ++RG LG   +      PS+V+ALA  KIV+ + G  H LA  E+G+ + WG +  G+
Sbjct: 63  GWNQRGTLGHPPETKTESTPSQVKALANVKIVQAAIGGWHCLAVDEEGRTYAWGGNEYGQ 122

Query: 204 IGNLGKAL------ESSPLDSNIDRSSESDQEISSSTIEKAQK----LVSEGMEKEKYMP 253
                +        ES  L  +I         +    +         L  EG       P
Sbjct: 123 CAEEQQTKEQQNKGESKVLHRDITIPQRCAPRLCVRQLTAGGTHSVVLTEEGHVWTWGQP 182

Query: 254 -------IIWEPFLVEGVE-VVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGM 305
                   I  P  V+G+E V  IA G  H+L L ++G + + G+N YGQLG        
Sbjct: 183 WPPGDIKQISVPVRVQGLENVTMIAVGAFHNLALVQHGEVWAWGNNEYGQLGTGDTQPRS 242

Query: 306 FPVDIN----FHPVSISSGLGHSLAI 327
            PV +        V I++G  HS+A+
Sbjct: 243 SPVPVKGLTGLVLVDIAAGGWHSMAL 268


>gi|348583539|ref|XP_003477530.1| PREDICTED: RCC1 and BTB domain-containing protein 2-like [Cavia
           porcellus]
          Length = 551

 Score =  108 bits (271), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 60/151 (39%), Positives = 92/151 (60%), Gaps = 5/151 (3%)

Query: 66  VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAF 125
           VT V+ G YHSL +T++G V+AWG NN  Q+G G+  ++A    P+RV G  Q  V    
Sbjct: 154 VTEVACGSYHSLVLTSDGEVFAWGYNNSGQVGSGSTANQAI---PRRVTGCLQNKVVVNI 210

Query: 126 ASG-VVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHA 184
           A G + S A+ D G ++VWG +  GQLGLG    +   P RV AL G ++ +V+ G+ H 
Sbjct: 211 ACGQMCSMAVVDTGEVYVWGYNGNGQLGLGSSGNQP-TPCRVAALQGIRVQRVACGYAHT 269

Query: 185 LAQTEDGKLFGWGYSADGRIGNLGKALESSP 215
           L  T++G+++ WG ++ G++G   K+ +S P
Sbjct: 270 LVLTDEGQVYAWGANSYGQLGTGNKSNQSYP 300



 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 76/289 (26%), Positives = 132/289 (45%), Gaps = 25/289 (8%)

Query: 77  LAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGL-DQVNVCAAFASGVVSSAIG 135
           L  T N  ++  G N    LG G ++S     +P+R++ L D+   C ++ SG       
Sbjct: 59  LYTTVNDEIFVLGTNCSGCLGLGDVQSTL---EPRRLDSLSDKKIACLSYGSGPHIVLAT 115

Query: 136 DDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEA-LAGEKIVKVSFGWGHALAQTEDGKLF 194
            +G ++ WG +  GQLG G  I   +VPS +   L+ +++ +V+ G  H+L  T DG++F
Sbjct: 116 TEGEVFSWGHNAYGQLGNGT-INHGLVPSHISTNLSNKQVTEVACGSYHSLVLTSDGEVF 174

Query: 195 GWGYSADGRIGNLGKALESSP------LDSNIDRSSESDQEISSSTIEKAQKLV------ 242
            WGY+  G++G+   A ++ P      L + +  +    Q  S + ++  +  V      
Sbjct: 175 AWGYNNSGQVGSGSTANQAIPRRVTGCLQNKVVVNIACGQMCSMAVVDTGEVYVWGYNGN 234

Query: 243 -SEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQ 301
              G+      P       ++G+ V  +ACG+ H+LVL   G + + G+N YGQLG   +
Sbjct: 235 GQLGLGSSGNQPTPCRVAALQGIRVQRVACGYAHTLVLTDEGQVYAWGANSYGQLGTGNK 294

Query: 302 DMGMFPVDINFHPVSISSGLGHSLAICEVRSSNVTGGARG-IVSWGWNR 349
               +P      PV +       +A C    ++      G +  WG  R
Sbjct: 295 SNQSYPT-----PVVVEKDRIIEIAACHSTHTSAAKTQGGHVYMWGQCR 338



 Score = 64.7 bits (156), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 68/270 (25%), Positives = 119/270 (44%), Gaps = 63/270 (23%)

Query: 111 KRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALA 170
           + ++ + Q  V  +  + V+ + + D+  ++V G +  G LGLG D+   + P R+++L+
Sbjct: 40  EELQVIRQACVFGSAGNEVLYTTVNDE--IFVLGTNCSGCLGLG-DVQSTLEPRRLDSLS 96

Query: 171 GEKIVKVSFGWG-HALAQTEDGKLFGWGYSADGRIGN--LGKALESSPLDSNIDRSSESD 227
            +KI  +S+G G H +  T +G++F WG++A G++GN  +   L  S + +N+       
Sbjct: 97  DKKIACLSYGSGPHIVLATTEGEVFSWGHNAYGQLGNGTINHGLVPSHISTNLSNK---- 152

Query: 228 QEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLS 287
                                                +V ++ACG  HSLVL  +G + +
Sbjct: 153 -------------------------------------QVTEVACGSYHSLVLTSDGEVFA 175

Query: 288 CGSNVYGQLGREKQDMGMFPVDI-----NFHPVSISSGLGHSLAICEVRSSNVTGGARGI 342
            G N  GQ+G         P  +     N   V+I+ G   S+A+ +      TG    +
Sbjct: 176 WGYNNSGQVGSGSTANQAIPRRVTGCLQNKVVVNIACGQMCSMAVVD------TGE---V 226

Query: 343 VSWGWNRSSQ--LGRMGPDNVPLVVEGLEG 370
             WG+N + Q  LG  G    P  V  L+G
Sbjct: 227 YVWGYNGNGQLGLGSSGNQPTPCRVAALQG 256


>gi|294462324|gb|ADE76711.1| unknown [Picea sitchensis]
          Length = 390

 Score =  108 bits (271), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 62/165 (37%), Positives = 94/165 (56%), Gaps = 4/165 (2%)

Query: 56  PTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEG 115
           P RV GL  +V  ++ G +H+LA+   G VWAWG N   QLG G  + R+    P  V+G
Sbjct: 192 PVRVQGL-ENVQLIAVGAFHNLALLEEGEVWAWGNNEYGQLGTGDTQPRS---QPVPVQG 247

Query: 116 LDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIV 175
           L  + +    A G  S+A+  D  ++ WG+ + G+LG G D +  +VP +V  LAGE I 
Sbjct: 248 LSGLILADIAAGGWHSTALTTDAEVYAWGRGEHGRLGFGDDKSSKMVPQKVHLLAGETIA 307

Query: 176 KVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNI 220
           +VS G  H++A+T DG++F +G +  GR+G   K     P++  I
Sbjct: 308 QVSCGGTHSVARTADGRIFSYGRADHGRLGYGRKVTTGHPMEVPI 352



 Score = 70.5 bits (171), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 85/317 (26%), Positives = 137/317 (43%), Gaps = 35/317 (11%)

Query: 79  VTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDG 138
           + ++ AV AWG   + QLG G +E +  W    +        V +  A    S AI +DG
Sbjct: 1   MESDHAVLAWGSGEDGQLGVGNMEDK-DWVCSIQALASHGKRVVSVVAGSRNSLAICEDG 59

Query: 139 SLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGY 198
            L+ WG ++RG LG   +      P++V+AL   KIV+ + G  H LA  + G+ + WG 
Sbjct: 60  QLFTWGWNQRGTLGHPPESKTESTPTQVKALENVKIVQAAIGGWHCLAVDDQGQAYAWGG 119

Query: 199 SADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEK---------- 248
           +     G  G+  E     S + R   +  +  +  + + +++ + G             
Sbjct: 120 N---EYGQCGEEPERKEDGSKVLRRDIAIPQRCAPQL-RVRQVAAGGTHSVVLTHNGHVW 175

Query: 249 ---EKYMP----IIWEPFLVEGVEVVD-IACGFDHSLVLGRNGVLLSCGSNVYGQLGREK 300
              + + P     I  P  V+G+E V  IA G  H+L L   G + + G+N YGQLG   
Sbjct: 176 TWGQPWPPGDIKQISTPVRVQGLENVQLIAVGAFHNLALLEEGEVWAWGNNEYGQLGTGD 235

Query: 301 QDMGMFPVDIN----FHPVSISSGLGHSLAICEVRSSNVTG-GARGIVSWGWNRSSQLGR 355
                 PV +          I++G  HS A+         G G  G + +G ++SS++  
Sbjct: 236 TQPRSQPVPVQGLSGLILADIAAGGWHSTALTTDAEVYAWGRGEHGRLGFGDDKSSKM-- 293

Query: 356 MGPDNVPLVVEGLEGES 372
                VP  V  L GE+
Sbjct: 294 -----VPQKVHLLAGET 305



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 75/312 (24%), Positives = 131/312 (41%), Gaps = 41/312 (13%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPS-DVTSVSAGHYHSLAVTNNGAVWA 87
           + ++G   +G LG P            PT+V  L +  +   + G +H LAV + G  +A
Sbjct: 61  LFTWGWNQRGTLGHPPESK----TESTPTQVKALENVKIVQAAIGGWHCLAVDDQGQAYA 116

Query: 88  WGRNNEVQLGR-------GALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSL 140
           WG N   Q G        G+   R     P+R     Q+ V    A G  S  +  +G +
Sbjct: 117 WGGNEYGQCGEEPERKEDGSKVLRRDIAIPQRC--APQLRVRQVAAGGTHSVVLTHNGHV 174

Query: 141 WVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSA 200
           W W     GQ     DI +   P RV+ L  E +  ++ G  H LA  E+G+++ WG + 
Sbjct: 175 WTW-----GQPWPPGDIKQISTPVRVQGL--ENVQLIAVGAFHNLALLEEGEVWAWGNNE 227

Query: 201 DGRIGNLGKALESSPLD---------SNI------DRSSESDQEISSSTIEKAQKLVSEG 245
            G++G       S P+          ++I        +  +D E+ +    +  +L    
Sbjct: 228 YGQLGTGDTQPRSQPVPVQGLSGLILADIAAGGWHSTALTTDAEVYAWGRGEHGRLGFGD 287

Query: 246 MEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGM 305
            +  K +P   +  L+ G  +  ++CG  HS+    +G + S G   +G+LG  ++    
Sbjct: 288 DKSSKMVPQ--KVHLLAGETIAQVSCGGTHSVARTADGRIFSYGRADHGRLGYGRKVTTG 345

Query: 306 FPVDINFHPVSI 317
            P+++   P+ I
Sbjct: 346 HPMEV---PIGI 354


>gi|333978308|ref|YP_004516253.1| Ig domain-containing protein [Desulfotomaculum kuznetsovii DSM
           6115]
 gi|333821789|gb|AEG14452.1| Ig domain protein group 2 domain protein [Desulfotomaculum
           kuznetsovii DSM 6115]
          Length = 1401

 Score =  108 bits (271), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 101/310 (32%), Positives = 139/310 (44%), Gaps = 65/310 (20%)

Query: 66  VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAF 125
           V +V AG ++SLA+ ++G VWAWG N   QLG G   +R T   P +V+ L    V A  
Sbjct: 69  VVAVEAGSFYSLALKSDGTVWAWGDNYYGQLGDGTTTNRYT---PVQVQNL--TGVVAIA 123

Query: 126 ASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHAL 185
           A G  S A+  DG++W WG +  GQLG G  IT    P +V+ L G   V    G  H+L
Sbjct: 124 AGGGHSLALKSDGTVWAWGYNGYGQLGDGT-ITNRTTPVQVKNLTGVVAVAAGGG--HSL 180

Query: 186 AQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEG 245
           A   DG ++ WGY+  G++G                                      +G
Sbjct: 181 ALKSDGTVWAWGYNGYGQLG--------------------------------------DG 202

Query: 246 MEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGM 305
               +Y P+  +        VV IA G  HSL L  +G + + G+N YGQLG        
Sbjct: 203 TTMNRYTPVQVQNL----TGVVAIAAGSSHSLALKSDGTVWAWGNNGYGQLGDGTTTNRT 258

Query: 306 FPVDIN--FHPVSISSGLGHSLAICEVRSSNVTGGARGIV-SWGWNRSSQLGRMGPDN-- 360
            PV +      V+I++G  HSLA+           + G V +WGWN S QLG     N  
Sbjct: 259 TPVRVQGLTDVVAIAAGNEHSLALK----------SDGTVWTWGWNYSGQLGDGTTTNRY 308

Query: 361 VPLVVEGLEG 370
            P+ V+ L G
Sbjct: 309 TPVQVQNLTG 318



 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 87/293 (29%), Positives = 138/293 (47%), Gaps = 30/293 (10%)

Query: 31  SFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGR 90
           ++GD   G LG      G   + Y P +V  L + V +++AG  HSLA+ ++G VWAWG 
Sbjct: 90  AWGDNYYGQLG-----DGTTTNRYTPVQVQNL-TGVVAIAAGGGHSLALKSDGTVWAWGY 143

Query: 91  NNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQ 150
           N   QLG G + +R T   P +V+ L  V   AA      S A+  DG++W WG +  GQ
Sbjct: 144 NGYGQLGDGTITNRTT---PVQVKNLTGVVAVAAGGGH--SLALKSDGTVWAWGYNGYGQ 198

Query: 151 LGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKA 210
           LG G  +     P +V+ L G  +V ++ G  H+LA   DG ++ WG +  G++G+    
Sbjct: 199 LGDGTTMNR-YTPVQVQNLTG--VVAIAAGSSHSLALKSDGTVWAWGNNGYGQLGDGTTT 255

Query: 211 LESSPLDSN-------IDRSSESDQEISSSTIE-----KAQKLVSEGMEKEKYMPIIWEP 258
             ++P+          I   +E    + S              + +G    +Y P+  + 
Sbjct: 256 NRTTPVRVQGLTDVVAIAAGNEHSLALKSDGTVWTWGWNYSGQLGDGTTTNRYTPVQVQN 315

Query: 259 FLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDIN 311
                  VV IA G  HSL L  +G + + G+N +G+LG   +     PV ++
Sbjct: 316 L----TGVVAIAAGGGHSLALKSDGTVWAWGNNDWGELGDGTRTDRHTPVQVS 364



 Score = 68.2 bits (165), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 47/114 (41%), Positives = 65/114 (57%), Gaps = 7/114 (6%)

Query: 56  PTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEG 115
           P RV GL +DV +++AG+ HSLA+ ++G VW WG N   QLG G   +R T   P +V+ 
Sbjct: 260 PVRVQGL-TDVVAIAAGNEHSLALKSDGTVWTWGWNYSGQLGDGTTTNRYT---PVQVQN 315

Query: 116 LDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEAL 169
           L    V A  A G  S A+  DG++W WG +  G+LG G   T+   P +V  L
Sbjct: 316 L--TGVVAIAAGGGHSLALKSDGTVWAWGNNDWGELGDGTR-TDRHTPVQVSGL 366



 Score = 45.1 bits (105), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 27/64 (42%), Positives = 39/64 (60%), Gaps = 4/64 (6%)

Query: 54  YEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRV 113
           Y P +V  L + V +++AG  HSLA+ ++G VWAWG N+  +LG G    R T   P +V
Sbjct: 308 YTPVQVQNL-TGVVAIAAGGGHSLALKSDGTVWAWGNNDWGELGDGTRTDRHT---PVQV 363

Query: 114 EGLD 117
            GL+
Sbjct: 364 SGLN 367


>gi|224127630|ref|XP_002329325.1| predicted protein [Populus trichocarpa]
 gi|222870779|gb|EEF07910.1| predicted protein [Populus trichocarpa]
          Length = 392

 Score =  108 bits (271), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 69/191 (36%), Positives = 102/191 (53%), Gaps = 5/191 (2%)

Query: 56  PTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEG 115
           P RV GL   V  ++ G +H+LA+  +G +WAWG N   QLG G  + R+    P  V+G
Sbjct: 190 PVRVQGL-ERVRLIAVGAFHNLALQEDGTLWAWGNNEYGQLGTGDTQPRS---QPITVQG 245

Query: 116 LDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLG-KDITEAIVPSRVEALAGEKI 174
           L  + +    A G  S+A+ DDG ++ WG+ + G+LG G  D +  +VP RV  L GE I
Sbjct: 246 LSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQRVNLLVGEDI 305

Query: 175 VKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSST 234
           V+VS G  H++A T DG+++ +G    GR+G   K     P++  ID     +   S   
Sbjct: 306 VQVSCGGTHSVALTRDGRMYTFGRGDHGRLGYGRKVTTGQPMEVPIDIPPPKNLTDSGDA 365

Query: 235 IEKAQKLVSEG 245
                KLV+ G
Sbjct: 366 GRWIAKLVASG 376



 Score = 91.3 bits (225), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 80/281 (28%), Positives = 131/281 (46%), Gaps = 65/281 (23%)

Query: 66  VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAF 125
           V  V+AG  HS+ +T  G VW+WG+        G ++  +    P RV+GL++V + A  
Sbjct: 153 VRQVAAGGTHSVVLTREGHVWSWGQ----PWPPGDIKQISV---PVRVQGLERVRLIAVG 205

Query: 126 ASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHAL 185
           A    + A+ +DG+LW WG ++ GQLG G D      P  V+ L+G  +V ++ G  H+ 
Sbjct: 206 A--FHNLALQEDGTLWAWGNNEYGQLGTG-DTQPRSQPITVQGLSGLTLVDIAAGGWHST 262

Query: 186 AQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEG 245
           A T+DG+++GWG    GR+G             N                +K+ K+V + 
Sbjct: 263 ALTDDGEVYGWGRGEHGRLG----------FGDN----------------DKSSKMVPQR 296

Query: 246 MEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGM 305
           +             L+ G ++V ++CG  HS+ L R+G + + G   +G+LG  ++    
Sbjct: 297 VN------------LLVGEDIVQVSCGGTHSVALTRDGRMYTFGRGDHGRLGYGRKVTTG 344

Query: 306 FP--VDINFHPVS---------------ISSGLGHSLAICE 329
            P  V I+  P                 ++SG  H+LAI E
Sbjct: 345 QPMEVPIDIPPPKNLTDSGDAGRWIAKLVASGGRHTLAIVE 385



 Score = 79.3 bits (194), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 89/301 (29%), Positives = 133/301 (44%), Gaps = 24/301 (7%)

Query: 84  AVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVW 143
           +V AWG   + QLG G  E +  W     V+ L+   V +  A    S AI DDG L+ W
Sbjct: 6   SVIAWGSGEDGQLGIGNNEEKE-W--VCIVKALEPYKVRSVVAGSRNSLAICDDGKLFTW 62

Query: 144 GKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGR 203
           G ++RG LG   +     +PS+V+ALA   IV+ + G  H LA  + G+ + WG +  G+
Sbjct: 63  GWNQRGTLGHPPETKTENIPSQVKALANVNIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQ 122

Query: 204 IGNLGKALESS--PLDSNIDRSSESDQEISSSTIEKAQK----LVSEGMEKEKYMPI--- 254
            G   +  + +  PL  +I        ++    +         L  EG       P    
Sbjct: 123 CGEEPERKDDTGRPLRRDIVIPQRCASKLVVRQVAAGGTHSVVLTREGHVWSWGQPWPPG 182

Query: 255 ----IWEPFLVEGVEVVD-IACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVD 309
               I  P  V+G+E V  IA G  H+L L  +G L + G+N YGQLG         P+ 
Sbjct: 183 DIKQISVPVRVQGLERVRLIAVGAFHNLALQEDGTLWAWGNNEYGQLGTGDTQPRSQPIT 242

Query: 310 IN----FHPVSISSGLGHSLAICEVRSSNVTGGARGIV-SWGWNRSSQLGRMGPDNVPLV 364
           +        V I++G  HS A+ +     V G  RG     G+  + +  +M P  V L+
Sbjct: 243 VQGLSGLTLVDIAAGGWHSTALTD--DGEVYGWGRGEHGRLGFGDNDKSSKMVPQRVNLL 300

Query: 365 V 365
           V
Sbjct: 301 V 301



 Score = 47.8 bits (112), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 62/242 (25%), Positives = 94/242 (38%), Gaps = 57/242 (23%)

Query: 137 DGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGW 196
           + S+  WG  + GQLG+G +  +  V   V+AL   K+  V  G  ++LA  +DGKLF W
Sbjct: 4   ESSVIAWGSGEDGQLGIGNNEEKEWV-CIVKALEPYKVRSVVAGSRNSLAICDDGKLFTW 62

Query: 197 GYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIW 256
           G++  G +G+                      E  +  I    K ++             
Sbjct: 63  GWNQRGTLGH--------------------PPETKTENIPSQVKALAN------------ 90

Query: 257 EPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGRE---KQDMGMFPVDINFH 313
                  V +V  A G  H L +   G   + G N YGQ G E   K D G  P+  +  
Sbjct: 91  -------VNIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGR-PLRRD-- 140

Query: 314 PVSISSGLGHSLAICEVRSSNVTGGARGIV------SWGWNRSSQLGRMGPDNVPLVVEG 367
            + I       L + +V      GG   +V       W W +    G +   +VP+ V+G
Sbjct: 141 -IVIPQRCASKLVVRQV----AAGGTHSVVLTREGHVWSWGQPWPPGDIKQISVPVRVQG 195

Query: 368 LE 369
           LE
Sbjct: 196 LE 197


>gi|348525468|ref|XP_003450244.1| PREDICTED: RCC1 and BTB domain-containing protein 2-like
           [Oreochromis niloticus]
          Length = 536

 Score =  108 bits (271), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 60/162 (37%), Positives = 96/162 (59%), Gaps = 5/162 (3%)

Query: 62  LPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNV 121
           L   VT V+ G +H++A+T +G V+AWG NN  Q+G G+  ++ T   P+RV    Q  V
Sbjct: 135 LSKRVTEVACGSHHTIALTTDGEVYAWGYNNSGQVGSGSTANQPT---PRRVSSCLQNKV 191

Query: 122 CAAFASG-VVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFG 180
               A G + S A+ D+G ++ WG +  GQLGLG +  +   P R+ AL G  IV+V+ G
Sbjct: 192 VVNIACGQLCSMAVLDNGEIYGWGYNCNGQLGLGNNGNQQ-TPCRIAALQGVNIVQVACG 250

Query: 181 WGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDR 222
           + H LA T++G ++ WG ++ G++G   K+ ++ P   N D+
Sbjct: 251 YAHTLALTDEGFVYAWGANSYGQLGTGNKSNQALPTPINTDK 292



 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 70/256 (27%), Positives = 123/256 (48%), Gaps = 29/256 (11%)

Query: 76  SLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLD-QVNVCAAFASG---VVS 131
           +L VT N  V+A G N    LG G L+S     +P+R++ L  +  V  ++ +G   V++
Sbjct: 43  ALYVTVNDEVFALGTNCSGCLGLGDLQSTI---EPRRIDVLCGKKIVSLSYGTGPHVVIA 99

Query: 132 SAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEA-LAGEKIVKVSFGWGHALAQTED 190
           +A   DG ++ WG +   QLG G      + P+ V   L  +++ +V+ G  H +A T D
Sbjct: 100 TA---DGEVYAWGHNGYSQLGNGT-TNHGLTPALVSTNLLSKRVTEVACGSHHTIALTTD 155

Query: 191 GKLFGWGYSADGRIGNLGKALESSP------LDSNIDRSSESDQEISSSTIEKAQKL--- 241
           G+++ WGY+  G++G+   A + +P      L + +  +    Q  S + ++  +     
Sbjct: 156 GEVYAWGYNNSGQVGSGSTANQPTPRRVSSCLQNKVVVNIACGQLCSMAVLDNGEIYGWG 215

Query: 242 ------VSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQ 295
                 +  G    +  P       ++GV +V +ACG+ H+L L   G + + G+N YGQ
Sbjct: 216 YNCNGQLGLGNNGNQQTPCRIAA--LQGVNIVQVACGYAHTLALTDEGFVYAWGANSYGQ 273

Query: 296 LGREKQDMGMFPVDIN 311
           LG   +     P  IN
Sbjct: 274 LGTGNKSNQALPTPIN 289



 Score = 67.8 bits (164), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 77/275 (28%), Positives = 120/275 (43%), Gaps = 35/275 (12%)

Query: 110 PKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEAL 169
           P+ +  + Q  V  + A+  +   + D+  ++  G +  G LGLG D+   I P R++ L
Sbjct: 24  PEELRLIRQACVFGSAANEALYVTVNDE--VFALGTNCSGCLGLG-DLQSTIEPRRIDVL 80

Query: 170 AGEKIVKVSFGWG-HALAQTEDGKLFGWGYSADGRIGN------LGKALESSPLDSN--I 220
            G+KIV +S+G G H +  T DG+++ WG++   ++GN      L  AL S+ L S    
Sbjct: 81  CGKKIVSLSYGTGPHVVIATADGEVYAWGHNGYSQLGNGTTNHGLTPALVSTNLLSKRVT 140

Query: 221 DRSSESDQEISSSTIEKAQK-------LVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGF 273
           + +  S   I+ +T  +           V  G    +  P      L   V VV+IACG 
Sbjct: 141 EVACGSHHTIALTTDGEVYAWGYNNSGQVGSGSTANQPTPRRVSSCLQNKV-VVNIACGQ 199

Query: 274 DHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDI----NFHPVSISSGLGHSLAICE 329
             S+ +  NG +   G N  GQLG         P  I      + V ++ G  H+LA+ +
Sbjct: 200 LCSMAVLDNGEIYGWGYNCNGQLGLGNNGNQQTPCRIAALQGVNIVQVACGYAHTLALTD 259

Query: 330 VRSSNVTGGARGIV-SWGWNRSSQLGRMGPDNVPL 363
                      G V +WG N   QLG     N  L
Sbjct: 260 ----------EGFVYAWGANSYGQLGTGNKSNQAL 284


>gi|407003324|gb|EKE19915.1| hypothetical protein ACD_8C00086G0006 [uncultured bacterium]
          Length = 2770

 Score =  108 bits (270), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 102/303 (33%), Positives = 146/303 (48%), Gaps = 37/303 (12%)

Query: 69  VSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVN-VCAAFAS 127
           V AG+YH+LA+ ++G VWAWG N   +LG G+  +R     P +V GL +V+ + AAF  
Sbjct: 273 VVAGYYHNLALKSDGTVWAWGYNYYGRLGDGSTINRIV---PVQVSGLTEVSAISAAFGH 329

Query: 128 GVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQ 187
              S A+  DG+LW WG + RGQLG    IT+++VP  V+ L G  +  +S G+ ++LA 
Sbjct: 330 ---SMALKSDGTLWTWGYNNRGQLG-NNSITQSLVP--VQVLTG--VASISAGYDYSLAV 381

Query: 188 TEDGKLFGWGYSADGRIGNLGK-----ALESSPLDSNIDRSSESDQEISSSTIEKAQKLV 242
             DG ++ WG +  G+ GN         ++ S L      S+ S    S S   K+   V
Sbjct: 382 KSDGTVWAWGRNYYGQFGNNSTIDSLVPIQVSGLTGVTSISATSSNNYSHSLALKSDGTV 441

Query: 243 ------SEGMEKEKYMPIIWEPFLVEGVE-VVDIACGFDHSLVLGRNGVLLSCGSNVYGQ 295
                 S G            P    G+  VV I+ G +HS+ L  +G     G N  GQ
Sbjct: 442 WGWGYNSTGQLGNNSATQSLVPVQALGLTGVVSISAGSNHSMALKSDGTAWIWGGNSDGQ 501

Query: 296 LGREKQDMGMFPVDI-NFHPVS-ISSGLGHSLAICEVRSSNVTGGARGIV-SWGWNRSSQ 352
           LG       + PV +     VS IS+G  HS+A+           + G V +WG N S Q
Sbjct: 502 LGNNSTAQSLVPVQVPGLSGVSAISAGNYHSMAL----------KSDGTVWAWGRNSSGQ 551

Query: 353 LGR 355
           LG 
Sbjct: 552 LGN 554



 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 102/343 (29%), Positives = 153/343 (44%), Gaps = 85/343 (24%)

Query: 31  SFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGR 90
           ++GD + G LG  +++T     +  P +V GL + V+SV AG  HS+A+ ++G VWAWG 
Sbjct: 709 AWGDNAYGMLGNNSTVT-----SSIPVQVSGL-TGVSSVKAGRLHSMALKSDGTVWAWGY 762

Query: 91  NNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQ 150
           N E QLG G+   R     P +V GL+  +V A  A    S  I  DG++W WG++  GQ
Sbjct: 763 NTEGQLGDGSTTQRLV---PVQVSGLE--DVIAISAGDYHSMVIKSDGTVWAWGRNSNGQ 817

Query: 151 LGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKA 210
           LG     T ++VP +V  L G  +  +S G   + A   DG    WG +  G++      
Sbjct: 818 LG-NNSTTGSLVPVQVPGLTG--VALISAGTNTSAAVKSDGTALAWGSNTYGQL------ 868

Query: 211 LESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPI-IWEPFLVEGVEVVDI 269
                                            +G   ++ +P+ + EP    GV  + +
Sbjct: 869 --------------------------------CDGSNIQRLIPVQVSEPV---GVGALSM 893

Query: 270 ACGFDHSLVLGRNGVLLSCGSNVYGQLGREK--------QDMGMFPVDINFHPVSISSGL 321
                HSL+L  +G +  CG N YG +G           Q +G+  V      VSIS+GL
Sbjct: 894 VVANSHSLILKLDGTVWGCGRNDYGPIGNNSITDSKVPVQTLGLAGV------VSISAGL 947

Query: 322 GHSLAICEVRSSNVTGGARGIVSWGWNRSSQLG------RMGP 358
            HS+A+   +S     G      WG+N   QLG      R+ P
Sbjct: 948 YHSMAL---KSDGTIWG------WGYNGYGQLGDNSTTSRLAP 981



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 86/266 (32%), Positives = 129/266 (48%), Gaps = 54/266 (20%)

Query: 66  VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGA-LESRATWNDPKRVEGLDQVNVCAA 124
           V S+SAG+ +SLAV ++G VWAWGRN   Q G  + ++S      P +V GL  V   +A
Sbjct: 368 VASISAGYDYSLAVKSDGTVWAWGRNYYGQFGNNSTIDSLV----PIQVSGLTGVTSISA 423

Query: 125 FASGVVSS--AIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWG 182
            +S   S   A+  DG++W WG +  GQLG     T+++VP  V+AL    +V +S G  
Sbjct: 424 TSSNNYSHSLALKSDGTVWGWGYNSTGQLG-NNSATQSLVP--VQALGLTGVVSISAGSN 480

Query: 183 HALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLV 242
           H++A   DG  + WG ++DG++GN                         +ST   AQ LV
Sbjct: 481 HSMALKSDGTAWIWGGNSDGQLGN-------------------------NST---AQSLV 512

Query: 243 SEGMEKEKYMPIIWEPFLVEGVE-VVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQ 301
                          P  V G+  V  I+ G  HS+ L  +G + + G N  GQLG    
Sbjct: 513 ---------------PVQVPGLSGVSAISAGNYHSMALKSDGTVWAWGRNSSGQLGNNST 557

Query: 302 DMGMFPVDINFHPVSISSGLGHSLAI 327
            + + P+ +     S+S+G  HS+A+
Sbjct: 558 TVSLVPIQVLTGTTSVSAGTYHSMAL 583



 Score = 85.5 bits (210), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 74/253 (29%), Positives = 112/253 (44%), Gaps = 49/253 (19%)

Query: 56  PTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEG 115
           P +V GL  DV ++SAG YHS+ + ++G VWAWGRN+  QLG  +         P +V G
Sbjct: 779 PVQVSGL-EDVIAISAGDYHSMVIKSDGTVWAWGRNSNGQLGNNSTTGSLV---PVQVPG 834

Query: 116 LDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIV 175
           L  V + +A  +   S+A+  DG+   WG +  GQL  G +I + ++P +V    G   +
Sbjct: 835 LTGVALISAGTN--TSAAVKSDGTALAWGSNTYGQLCDGSNI-QRLIPVQVSEPVGVGAL 891

Query: 176 KVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTI 235
            +     H+L    DG ++G G +  G IGN                +S +D ++   T+
Sbjct: 892 SMVVANSHSLILKLDGTVWGCGRNDYGPIGN----------------NSITDSKVPVQTL 935

Query: 236 EKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQ 295
             A                           VV I+ G  HS+ L  +G +   G N YGQ
Sbjct: 936 GLAG--------------------------VVSISAGLYHSMALKSDGTIWGWGYNGYGQ 969

Query: 296 LGREKQDMGMFPV 308
           LG       + PV
Sbjct: 970 LGDNSTTSRLAPV 982



 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 92/324 (28%), Positives = 136/324 (41%), Gaps = 73/324 (22%)

Query: 56  PTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRG---------------- 99
           P +VPGL S V+++SAG+YHS+A+ ++G VWAWGRN+  QLG                  
Sbjct: 513 PVQVPGL-SGVSAISAGNYHSMALKSDGTVWAWGRNSSGQLGNNSTTVSLVPIQVLTGTT 571

Query: 100 ----------ALESR-ATW----NDPKRV---EGLDQV--------NVCAAFASGVVSS- 132
                     AL+S  A W    N+ K++     LDQ+           + F  G V S 
Sbjct: 572 SVSAGTYHSMALKSDGAVWGWGNNEYKKIISNTNLDQLVPVKTAMNAYISDFNDGFVPSS 631

Query: 133 ------------------AIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKI 174
                             A+  D ++W WG    G LG G    + +V   V  L G  +
Sbjct: 632 QEIKSIATSSGGSYGYSLALKSDKTVWAWGYGGSGVLGNGTG-EQMLVGYPVRDLTG--V 688

Query: 175 VKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLD-------SNIDRSSESD 227
            ++S G GH+LA   DG  + WG +A G +GN      S P+        S++       
Sbjct: 689 EQISAGEGHSLALRSDGTAWAWGDNAYGMLGNNSTVTSSIPVQVSGLTGVSSVKAGRLHS 748

Query: 228 QEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVE-VVDIACGFDHSLVLGRNGVLL 286
             + S     A    +EG   +        P  V G+E V+ I+ G  HS+V+  +G + 
Sbjct: 749 MALKSDGTVWAWGYNTEGQLGDGSTTQRLVPVQVSGLEDVIAISAGDYHSMVIKSDGTVW 808

Query: 287 SCGSNVYGQLGREKQDMGMFPVDI 310
           + G N  GQLG       + PV +
Sbjct: 809 AWGRNSNGQLGNNSTTGSLVPVQV 832


>gi|444910521|ref|ZP_21230705.1| BNR repeat domain protein [Cystobacter fuscus DSM 2262]
 gi|444719140|gb|ELW59939.1| BNR repeat domain protein [Cystobacter fuscus DSM 2262]
          Length = 715

 Score =  108 bits (270), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 91/290 (31%), Positives = 137/290 (47%), Gaps = 56/290 (19%)

Query: 66  VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAF 125
           + +V+AG  HSLA+  NG V+AWGRNN  QLG G+  +R+    P +V  L  +   AA 
Sbjct: 407 IIAVAAGANHSLALAANGTVFAWGRNNHGQLGDGSTTNRSL---PTQVPNLTGIVALAAG 463

Query: 126 ASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHAL 185
           A+   S A+  DG+++ WG++  GQLG  +  T+ + P  V  L  EK+V +S G  H+L
Sbjct: 464 ATH--SLALRFDGTVYAWGRNHLGQLG-DETCTDRLSPVAVHYL--EKVVAISAGDNHSL 518

Query: 186 AQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEG 245
           A  ++G  F WG                            SD+           +L   G
Sbjct: 519 AIHQNGTAFAWG----------------------------SDEH---------GQLCDSG 541

Query: 246 MEKEKYMPIIWE-PFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMG 304
               ++ P+I + P +V+G+    IA G +H+L+L  NG   +CG N+YGQLG       
Sbjct: 542 SGSGRFSPLISQIPGIVKGI---GIAAGANHTLLLEANGTAWACGDNLYGQLGDGTTTDK 598

Query: 305 MFPVDINFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLG 354
             PV     P++  +      A     ++  T G   + +WG N S QLG
Sbjct: 599 SAPV-----PITTLTNAARLAAGGNTSAALTTNGT--VSTWGLNSSGQLG 641



 Score =  108 bits (270), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 94/333 (28%), Positives = 146/333 (43%), Gaps = 68/333 (20%)

Query: 48  GVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATW 107
           G   D+  P +V  L + V SV+AG+YHSLA+ ++G VWAWG N    LG     +R   
Sbjct: 31  GTATDSLSPVQVSNL-TGVISVAAGYYHSLALKSDGTVWAWGLNTYGNLGDNTTTTRT-- 87

Query: 108 NDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVE 167
              K V+ L+   V A  A    S A+  DG++W WG +    LG     T+ + P++V+
Sbjct: 88  ---KPVQVLNLTGVIAIAADYYQSFALKSDGTVWSWGYNGNSALGNASPATQKL-PAQVQ 143

Query: 168 ALAG------EKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNID 221
              G        +V ++ G  H LA   +G ++ WG ++ G++GN   A +S+ + +   
Sbjct: 144 QSFGGILSPLTDVVAIAAGTHHTLALKSNGTVWSWGLNSSGQLGNGTLATQSAAVQA--- 200

Query: 222 RSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGR 281
                                                  V   + V I+ G  HSL L  
Sbjct: 201 ---------------------------------------VNLTDAVAISAGAAHSLALRA 221

Query: 282 NGVLLSCGSNVYGQLGREKQDMGMFPVDIN--FHPVSISSGLGHSLAICEVRSSNVTGGA 339
           NG ++S G+N YGQLG         PV ++   +  S+++G  HSLA+    +       
Sbjct: 222 NGAVVSWGANTYGQLGNGTTTTSASPVGVSGLNNIKSLAAGGNHSLALKSDGT------- 274

Query: 340 RGIVSWGWNRSSQLGRMGPDNV--PLVVEGLEG 370
             + +WG+N   Q+G     NV  P+ V  L G
Sbjct: 275 --VTAWGYNAYGQVGNGATANVLSPIAVSTLSG 305



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 94/327 (28%), Positives = 150/327 (45%), Gaps = 44/327 (13%)

Query: 64  SDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCA 123
           +DV +++AG +H+LA+ +NG VW+WG N+  QLG G L +++       V+ ++  +  A
Sbjct: 154 TDVVAIAAGTHHTLALKSNGTVWSWGLNSSGQLGNGTLATQS-----AAVQAVNLTDAVA 208

Query: 124 AFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGH 183
             A    S A+  +G++  WG +  GQLG G   T A  P  V  L    I  ++ G  H
Sbjct: 209 ISAGAAHSLALRANGAVVSWGANTYGQLGNGTTTTSA-SPVGVSGL--NNIKSLAAGGNH 265

Query: 184 ALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVS 243
           +LA   DG +  WGY+A G++GN   A   SP    I  S+ S     S+ +  +  + S
Sbjct: 266 SLALKSDGTVTAWGYNAYGQVGNGATANVLSP----IAVSTLSGVTAVSAGVSHSHAIGS 321

Query: 244 E---------------GMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSC 288
                           G   +          L  G++   +A G  H++ +  +G + + 
Sbjct: 322 SNGVIWGWGLNTYGGLGNNTKVNRSTPGTILLTSGLQ--GVAGGAQHTIYVKGDGTVWAW 379

Query: 289 GSNVYGQLGREKQDMGMFPVDINFHP--VSISSGLGHSLAICEVRSSNVTGGARGIV-SW 345
           GSN YGQ+G       + PV ++     +++++G  HSLA+           A G V +W
Sbjct: 380 GSNTYGQIGDGTPLRRLTPVQLSTLTGIIAVAAGANHSLALA----------ANGTVFAW 429

Query: 346 GWNRSSQLGRMGPDN--VPLVVEGLEG 370
           G N   QLG     N  +P  V  L G
Sbjct: 430 GRNNHGQLGDGSTTNRSLPTQVPNLTG 456



 Score = 52.0 bits (123), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 51/172 (29%), Positives = 78/172 (45%), Gaps = 23/172 (13%)

Query: 47  TGVGGDAYEP--TRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESR 104
           +G G   + P  +++PG+   +  ++AG  H+L +  NG  WA G N   QLG G    +
Sbjct: 540 SGSGSGRFSPLISQIPGIVKGI-GIAAGANHTLLLEANGTAWACGDNLYGQLGDGTTTDK 598

Query: 105 ATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEA---- 160
           +    P  +  L   N     A G  S+A+  +G++  WG +  GQLG   D T A    
Sbjct: 599 SA---PVPITTL--TNAARLAAGGNTSAALTTNGTVSTWGLNSSGQLG---DNTTASRTT 650

Query: 161 IVP------SRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGN 206
           I P        VE  +G  +  +  G  H  A   DG +  WG +  G+IG+
Sbjct: 651 IAPVLRTVYPTVEVFSG--VASLGAGTAHLTAVKTDGYVHSWGLNDSGQIGD 700



 Score = 38.9 bits (89), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 45/155 (29%), Positives = 70/155 (45%), Gaps = 15/155 (9%)

Query: 17  SRIFMRSASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHS 76
           +   +  A+GTA  + GD   G LG  T+      D   P  +  L ++   ++AG   S
Sbjct: 568 NHTLLLEANGTAW-ACGDNLYGQLGDGTTT-----DKSAPVPITTL-TNAARLAAGGNTS 620

Query: 77  LAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRV--EGLDQVNVCAAFASGVVS-SA 133
            A+T NG V  WG N+  QLG     SR T     R     ++  +  A+  +G    +A
Sbjct: 621 AALTTNGTVSTWGLNSSGQLGDNTTASRTTIAPVLRTVYPTVEVFSGVASLGAGTAHLTA 680

Query: 134 IGDDGSLWVWGKSKRGQLGLGKDI-----TEAIVP 163
           +  DG +  WG +  GQ+G G  +     T A++P
Sbjct: 681 VKTDGYVHSWGLNDSGQIGDGTLVNRPLPTAALLP 715


>gi|302806118|ref|XP_002984809.1| hypothetical protein SELMODRAFT_234638 [Selaginella moellendorffii]
 gi|300147395|gb|EFJ14059.1| hypothetical protein SELMODRAFT_234638 [Selaginella moellendorffii]
          Length = 391

 Score =  108 bits (270), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 64/177 (36%), Positives = 99/177 (55%), Gaps = 4/177 (2%)

Query: 56  PTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEG 115
           P RV GL  +VT ++ G +H+LA+  +G VWAWG N   QLG G  + R++   P  V+G
Sbjct: 191 PVRVQGL-ENVTMIAVGAFHNLALVQHGEVWAWGNNEYGQLGTGDTQPRSS---PVPVKG 246

Query: 116 LDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIV 175
           L  + +    A G  S A+  DG+++ WG+ + G+LG G D +  ++P +V  LAGE +V
Sbjct: 247 LTGLVLVDIAAGGWHSMALTPDGAVYGWGRGEHGRLGFGDDKSSKMLPQKVHLLAGEPVV 306

Query: 176 KVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISS 232
           +VS G  H++A T  G++F +G    GR+G  G      P++  +     S   I S
Sbjct: 307 QVSCGGTHSVAATISGRMFSFGRGDHGRLGYGGAVTTGHPVEVPVSLHHYSRHNIVS 363



 Score = 82.4 bits (202), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 78/263 (29%), Positives = 119/263 (45%), Gaps = 22/263 (8%)

Query: 84  AVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVW 143
            V AWG   + QLG G L+ +   +    V+ L   NV +  A    S AI +DG L+ W
Sbjct: 6   CVLAWGAGEDGQLGLGNLQDK---DSVCVVDALRDHNVVSVVAGSRNSLAICEDGRLFTW 62

Query: 144 GKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGR 203
           G ++RG LG   +      PS+V+ALA  KIV+ + G  H LA  E+G+ + WG +  G+
Sbjct: 63  GWNQRGTLGHPPETKTESTPSQVKALANVKIVQAAIGGWHCLAVDEEGRTYAWGGNEYGQ 122

Query: 204 IGNLGKALESSPLDSN--IDRSSESDQEISSSTIEKAQKLVSEGMEKEKY---------- 251
                +  E      +  + R     Q  +      A    S  + +E +          
Sbjct: 123 CAEEQQTKEQQNKGESKVLHRDITIPQRCAPRLCVAAGGTHSVVLTEEGHVWTWGQPWPP 182

Query: 252 --MPIIWEPFLVEGVE-VVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPV 308
             +  I  P  V+G+E V  IA G  H+L L ++G + + G+N YGQLG         PV
Sbjct: 183 GDIKQISVPVRVQGLENVTMIAVGAFHNLALVQHGEVWAWGNNEYGQLGTGDTQPRSSPV 242

Query: 309 DIN----FHPVSISSGLGHSLAI 327
            +        V I++G  HS+A+
Sbjct: 243 PVKGLTGLVLVDIAAGGWHSMAL 265


>gi|449457319|ref|XP_004146396.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC1-like [Cucumis
           sativus]
          Length = 438

 Score =  108 bits (270), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 96/353 (27%), Positives = 156/353 (44%), Gaps = 65/353 (18%)

Query: 23  SASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPS-DVTSVSAGHYHSLAVTN 81
           S + T V S+G G  G LG      G   D   P  +  L    +  ++ G  H LAVT 
Sbjct: 76  SVARTEVYSWGWGDFGRLG-----HGNSSDLLTPKPIKALHGLKIRQIACGDSHCLAVTM 130

Query: 82  NGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLW 141
            G V +WGRN   QLG G  E       P++++  + +++    A    ++A+ +DG L+
Sbjct: 131 EGEVQSWGRNQNGQLGLGTTEDSLV---PQKIQAFEGISIKMVAAGAEHTAAVTEDGELF 187

Query: 142 VWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSAD 201
            WG  + G LGLG D  + +VP +V ++ G+K+V V+ GW H ++ +  G L+ +G+S  
Sbjct: 188 GWGWGRYGNLGLG-DRNDRLVPQKVSSVDGDKMVMVACGWRHTISVSSLGGLYTYGWSKY 246

Query: 202 GRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLV 261
           G++G+                    D E          +LV   +E             +
Sbjct: 247 GQLGH-------------------GDFE---------DRLVPHRLEA------------L 266

Query: 262 EGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINF----HPVSI 317
            G  +  I+ G+ H++ L  +G L   G N +GQ+G         P+ I F      + I
Sbjct: 267 RGDNISQISGGWRHTMALTTDGKLYGWGWNKFGQVGAGDNIDHCSPIQIKFPQDQKVIQI 326

Query: 318 SSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGR--MGPDNVPLVVEGL 368
           S G  H+LA+ +          + + SWG   + QLG       N P+++E L
Sbjct: 327 SCGWRHTLAVTD---------KQNVFSWGRGTNGQLGHGESVDRNTPMILEAL 370



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 61/212 (28%), Positives = 106/212 (50%), Gaps = 11/212 (5%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSD-VTSVSAGHYHSLAVTNNGAVWA 87
           +  +G G  G LGL     G   D   P +V  +  D +  V+ G  H+++V++ G ++ 
Sbjct: 186 LFGWGWGRYGNLGL-----GDRNDRLVPQKVSSVDGDKMVMVACGWRHTISVSSLGGLYT 240

Query: 88  WGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSK 147
           +G +   QLG G  E R     P R+E L   N+         + A+  DG L+ WG +K
Sbjct: 241 YGWSKYGQLGHGDFEDRLV---PHRLEALRGDNISQISGGWRHTMALTTDGKLYGWGWNK 297

Query: 148 RGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNL 207
            GQ+G G +I +   P +++    +K++++S GW H LA T+   +F WG   +G++G+ 
Sbjct: 298 FGQVGAGDNI-DHCSPIQIKFPQDQKVIQISCGWRHTLAVTDKQNVFSWGRGTNGQLGHG 356

Query: 208 GKALESSPLD-SNIDRSSESDQEISSSTIEKA 238
                ++P+    +     S Q+I SS I+ +
Sbjct: 357 ESVDRNTPMILEALSVDGCSGQQIESSNIDPS 388



 Score = 58.9 bits (141), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 64/242 (26%), Positives = 100/242 (41%), Gaps = 69/242 (28%)

Query: 143 WGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGH----ALAQTEDGKLFGWGY 198
           WG+ + GQLG G D  + + P+++ AL G +IV V+ G  H    ++A+TE   ++ WG+
Sbjct: 32  WGRGEDGQLGHG-DAEDRLSPTQLSALDGHEIVSVTCGADHTTAYSVARTE---VYSWGW 87

Query: 199 SADGRIG--NLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIW 256
              GR+G  N    L   P+ +                                      
Sbjct: 88  GDFGRLGHGNSSDLLTPKPIKA-------------------------------------- 109

Query: 257 EPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDIN-FHPV 315
               + G+++  IACG  H L +   G + S G N  GQLG    +  + P  I  F  +
Sbjct: 110 ----LHGLKIRQIACGDSHCLAVTMEGEVQSWGRNQNGQLGLGTTEDSLVPQKIQAFEGI 165

Query: 316 SI---SSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPDN---VPLVVEGLE 369
           SI   ++G  H+ A+ E            +  WGW R   LG +G  N   VP  V  ++
Sbjct: 166 SIKMVAAGAEHTAAVTEDGE---------LFGWGWGRYGNLG-LGDRNDRLVPQKVSSVD 215

Query: 370 GE 371
           G+
Sbjct: 216 GD 217


>gi|383280368|pdb|4D9S|A Chain A, Crystal Structure Of Arabidopsis Thaliana Uvr8 (Uv
           Resistance Locus 8)
 gi|383280369|pdb|4D9S|B Chain B, Crystal Structure Of Arabidopsis Thaliana Uvr8 (Uv
           Resistance Locus 8)
          Length = 406

 Score =  108 bits (270), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 98/353 (27%), Positives = 155/353 (43%), Gaps = 65/353 (18%)

Query: 23  SASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPS-DVTSVSAGHYHSLAVTN 81
           S SG  V S+G G  G LG      G   D + P  +  L    +  ++ G  H LAVT 
Sbjct: 84  SQSGMEVYSWGWGDFGRLG-----HGNSSDLFTPLPIKALHGIRIKQIACGDSHCLAVTM 138

Query: 82  NGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLW 141
            G V +WGRN   QLG G  E       P++++  + + +    A    ++A+ +DG L+
Sbjct: 139 EGEVQSWGRNQNGQLGLGDTEDSLV---PQKIQAFEGIRIKMVAAGAEHTAAVTEDGDLY 195

Query: 142 VWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSAD 201
            WG  + G LGLG D T+ +VP RV +  GEK+  V+ GW H ++ +  G L+ +G+S  
Sbjct: 196 GWGWGRYGNLGLG-DRTDRLVPERVTSTGGEKMSMVACGWRHTISVSYSGALYTYGWSKY 254

Query: 202 GRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLV 261
           G++G+    LE   +   +       + +S+S I +                        
Sbjct: 255 GQLGH--GDLEDHLIPHKL-------EALSNSFISQ------------------------ 281

Query: 262 EGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINF----HPVSI 317
                  I+ G+ H++ L  +G L   G N +GQ+G         PV + F      V +
Sbjct: 282 -------ISGGWRHTMALTSDGKLYGWGWNKFGQVGVGNNLDQCSPVQVRFPDDQKVVQV 334

Query: 318 SSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQL--GRMGPDNVPLVVEGL 368
           S G  H+LA+ E  +         + +WG   + QL  G     N P ++E L
Sbjct: 335 SCGWRHTLAVTERNN---------VFAWGRGTNGQLGIGESVDRNFPKIIEAL 378



 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 92/351 (26%), Positives = 137/351 (39%), Gaps = 104/351 (29%)

Query: 58  RVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLD 117
            V   P  V  +SAG  HS+A+ +   V +WGR  + QLG G  E R +      ++G  
Sbjct: 10  EVTAPPRKVLIISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQ 69

Query: 118 QVNVCAAFASGVVSS------------------------------------------AIG 135
            V+V       V  S                                          A G
Sbjct: 70  IVSVTCGADHTVAYSQSGMEVYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIACG 129

Query: 136 D--------DGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQ 187
           D        +G +  WG+++ GQLGLG D  +++VP +++A  G +I  V+ G  H  A 
Sbjct: 130 DSHCLAVTMEGEVQSWGRNQNGQLGLG-DTEDSLVPQKIQAFEGIRIKMVAAGAEHTAAV 188

Query: 188 TEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGME 247
           TEDG L+GWG+   GR GNLG       L    DR                +++ S G E
Sbjct: 189 TEDGDLYGWGW---GRYGNLG-------LGDRTDRLV-------------PERVTSTGGE 225

Query: 248 KEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFP 307
           K                    +ACG+ H++ +  +G L + G + YGQLG    +  + P
Sbjct: 226 KMSM-----------------VACGWRHTISVSYSGALYTYGWSKYGQLGHGDLEDHLIP 268

Query: 308 VDI----NFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLG 354
             +    N     IS G  H++A+              +  WGWN+  Q+G
Sbjct: 269 HKLEALSNSFISQISGGWRHTMALTSDGK---------LYGWGWNKFGQVG 310



 Score = 80.5 bits (197), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 67/215 (31%), Positives = 104/215 (48%), Gaps = 23/215 (10%)

Query: 32  FGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTS-VSAGHYHSLAVTNNGAVWAWGR 90
           +G G  G LGL     G   D   P RV     +  S V+ G  H+++V+ +GA++ +G 
Sbjct: 197 WGWGRYGNLGL-----GDRTDRLVPERVTSTGGEKMSMVACGWRHTISVSYSGALYTYGW 251

Query: 91  NNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQ 150
           +   QLG G LE       P ++E L    +         + A+  DG L+ WG +K GQ
Sbjct: 252 SKYGQLGHGDLEDHLI---PHKLEALSNSFISQISGGWRHTMALTSDGKLYGWGWNKFGQ 308

Query: 151 LGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIG----- 205
           +G+G ++ +   P +V     +K+V+VS GW H LA TE   +F WG   +G++G     
Sbjct: 309 VGVGNNLDQC-SPVQVRFPDDQKVVQVSCGWRHTLAVTERNNVFAWGRGTNGQLGIGESV 367

Query: 206 --NLGKALESSPLDSNIDRSSESDQEISSSTIEKA 238
             N  K +E+  +D        S Q I SS I+ +
Sbjct: 368 DRNFPKIIEALSVD------GASGQHIESSNIDPS 396


>gi|379318635|pdb|4DNW|A Chain A, Crystal Structure Of Uvb-Resistance Protein Uvr8
 gi|379318636|pdb|4DNW|B Chain B, Crystal Structure Of Uvb-Resistance Protein Uvr8
          Length = 374

 Score =  108 bits (270), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 98/353 (27%), Positives = 155/353 (43%), Gaps = 65/353 (18%)

Query: 23  SASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPS-DVTSVSAGHYHSLAVTN 81
           S SG  V S+G G  G LG      G   D + P  +  L    +  ++ G  H LAVT 
Sbjct: 72  SQSGMEVYSWGWGDFGRLG-----HGNSSDLFTPLPIKALHGIRIKQIACGDSHCLAVTM 126

Query: 82  NGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLW 141
            G V +WGRN   QLG G  E       P++++  + + +    A    ++A+ +DG L+
Sbjct: 127 EGEVQSWGRNQNGQLGLGDTEDSLV---PQKIQAFEGIRIKMVAAGAEHTAAVTEDGDLY 183

Query: 142 VWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSAD 201
            WG  + G LGLG D T+ +VP RV +  GEK+  V+ GW H ++ +  G L+ +G+S  
Sbjct: 184 GWGWGRYGNLGLG-DRTDRLVPERVTSTGGEKMSMVACGWRHTISVSYSGALYTYGWSKY 242

Query: 202 GRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLV 261
           G++G+    LE   +   +       + +S+S I +                        
Sbjct: 243 GQLGH--GDLEDHLIPHKL-------EALSNSFISQ------------------------ 269

Query: 262 EGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINF----HPVSI 317
                  I+ G+ H++ L  +G L   G N +GQ+G         PV + F      V +
Sbjct: 270 -------ISGGWRHTMALTSDGKLYGWGWNKFGQVGVGNNLDQCSPVQVRFPDDQKVVQV 322

Query: 318 SSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQL--GRMGPDNVPLVVEGL 368
           S G  H+LA+ E  +         + +WG   + QL  G     N P ++E L
Sbjct: 323 SCGWRHTLAVTERNN---------VFAWGRGTNGQLGIGESVDRNFPKIIEAL 366



 Score = 89.0 bits (219), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 91/346 (26%), Positives = 136/346 (39%), Gaps = 104/346 (30%)

Query: 63  PSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVC 122
           P  V  +SAG  HS+A+ +   V +WGR  + QLG G  E R +      ++G   V+V 
Sbjct: 3   PRKVLIISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVT 62

Query: 123 AAFASGVVSS------------------------------------------AIGD---- 136
                 V  S                                          A GD    
Sbjct: 63  CGADHTVAYSQSGMEVYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIACGDSHCL 122

Query: 137 ----DGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGK 192
               +G +  WG+++ GQLGLG D  +++VP +++A  G +I  V+ G  H  A TEDG 
Sbjct: 123 AVTMEGEVQSWGRNQNGQLGLG-DTEDSLVPQKIQAFEGIRIKMVAAGAEHTAAVTEDGD 181

Query: 193 LFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYM 252
           L+GWG+   GR GNLG       L    DR                +++ S G EK    
Sbjct: 182 LYGWGW---GRYGNLG-------LGDRTDRLV-------------PERVTSTGGEKMSM- 217

Query: 253 PIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDI-- 310
                           +ACG+ H++ +  +G L + G + YGQLG    +  + P  +  
Sbjct: 218 ----------------VACGWRHTISVSYSGALYTYGWSKYGQLGHGDLEDHLIPHKLEA 261

Query: 311 --NFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLG 354
             N     IS G  H++A+              +  WGWN+  Q+G
Sbjct: 262 LSNSFISQISGGWRHTMALTSDGK---------LYGWGWNKFGQVG 298



 Score = 78.2 bits (191), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 61/197 (30%), Positives = 97/197 (49%), Gaps = 17/197 (8%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTS-VSAGHYHSLAVTNNGAVWA 87
           +  +G G  G LGL     G   D   P RV     +  S V+ G  H+++V+ +GA++ 
Sbjct: 182 LYGWGWGRYGNLGL-----GDRTDRLVPERVTSTGGEKMSMVACGWRHTISVSYSGALYT 236

Query: 88  WGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSK 147
           +G +   QLG G LE       P ++E L    +         + A+  DG L+ WG +K
Sbjct: 237 YGWSKYGQLGHGDLEDHLI---PHKLEALSNSFISQISGGWRHTMALTSDGKLYGWGWNK 293

Query: 148 RGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIG-- 205
            GQ+G+G ++ +   P +V     +K+V+VS GW H LA TE   +F WG   +G++G  
Sbjct: 294 FGQVGVGNNLDQC-SPVQVRFPDDQKVVQVSCGWRHTLAVTERNNVFAWGRGTNGQLGIG 352

Query: 206 -----NLGKALESSPLD 217
                N  K +E+  +D
Sbjct: 353 ESVDRNFPKIIEALSVD 369


>gi|15237253|ref|NP_197108.1| regulator of chromosome condensation repeat-containing protein
           [Arabidopsis thaliana]
 gi|9755650|emb|CAC01803.1| UVB-resistance protein-like [Arabidopsis thaliana]
 gi|114213505|gb|ABI54335.1| At5g16040 [Arabidopsis thaliana]
 gi|332004857|gb|AED92240.1| regulator of chromosome condensation repeat-containing protein
           [Arabidopsis thaliana]
          Length = 396

 Score =  108 bits (270), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 67/189 (35%), Positives = 105/189 (55%), Gaps = 11/189 (5%)

Query: 56  PTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEG 115
           P RV GL  +V  ++ G +H+LA+  +G +WAWG N   QLG G  + R+    P  V+G
Sbjct: 189 PVRVQGL-ENVRLIAVGAFHNLALKEDGTLWAWGNNEYGQLGTGDTQPRSY---PIPVQG 244

Query: 116 LDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLG-KDITEAIVPSRVEALAGEKI 174
           LD + +    A G  S+A+ ++G ++ WG+ + G+LG G  D +  ++P +V  LAGE I
Sbjct: 245 LDDLTLVDIAAGGWHSTALTNEGEVYGWGRGEHGRLGFGDNDKSSKMLPQKVNLLAGEDI 304

Query: 175 VKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNID------RSSESDQ 228
           ++VS G  H++A T DG++F +G    GR+G   K     PL+  I       R + +D+
Sbjct: 305 IQVSCGGTHSVALTRDGRIFSFGRGDHGRLGYGRKVTTGQPLELPIHIPPPEGRFNHTDE 364

Query: 229 EISSSTIEK 237
           E     I K
Sbjct: 365 EDDGKWIAK 373



 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 83/276 (30%), Positives = 125/276 (45%), Gaps = 24/276 (8%)

Query: 84  AVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVW 143
           +V AWG   + QLG G  E +        V+ L+  NV +       S AI DDG L+ W
Sbjct: 6   SVIAWGSGEDGQLGLGTDEEKEL---ASVVDALEPFNVRSVVGGSRNSLAICDDGKLFTW 62

Query: 144 GKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGR 203
           G ++RG LG   +      PS V++LA  KIV+ + G  H LA  + G+ + WG +  G+
Sbjct: 63  GWNQRGTLGHPPETKTESTPSLVKSLANVKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQ 122

Query: 204 IGNLGKALES-SPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKY----------- 251
            G      E+  P+  +I       Q+++   +  A    S  + +E Y           
Sbjct: 123 CGEEPSKDETGRPVRRDIVIPKRCAQQLTVRQV-AAGGTHSVVLTREGYVWTWGQPWPPG 181

Query: 252 -MPIIWEPFLVEGVEVVD-IACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVD 309
            +  I  P  V+G+E V  IA G  H+L L  +G L + G+N YGQLG        +P+ 
Sbjct: 182 DIKQISVPVRVQGLENVRLIAVGAFHNLALKEDGTLWAWGNNEYGQLGTGDTQPRSYPIP 241

Query: 310 I----NFHPVSISSGLGHSLAICEVRSSNVTGGARG 341
           +    +   V I++G  HS A+       V G  RG
Sbjct: 242 VQGLDDLTLVDIAAGGWHSTAL--TNEGEVYGWGRG 275



 Score = 69.7 bits (169), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 89/364 (24%), Positives = 143/364 (39%), Gaps = 88/364 (24%)

Query: 24  ASGTAVVSFGDGSQGALGLPTS----LTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAV 79
           AS T+V+++G G  G LGL T     L  V  DA EP        +V SV  G  +SLA+
Sbjct: 2   ASATSVIAWGSGEDGQLGLGTDEEKELASVV-DALEPF-------NVRSVVGGSRNSLAI 53

Query: 80  TNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGS 139
            ++G ++ WG N    LG        T + P  V+ L  V +  A   G    A+ D G 
Sbjct: 54  CDDGKLFTWGWNQRGTLGHPP--ETKTESTPSLVKSLANVKIVQAAIGGWHCLAVDDQGR 111

Query: 140 LWVWGKSKRGQLG-------LGKDITEAIV------------------------------ 162
            + WG ++ GQ G        G+ +   IV                              
Sbjct: 112 AYAWGGNEYGQCGEEPSKDETGRPVRRDIVIPKRCAQQLTVRQVAAGGTHSVVLTREGYV 171

Query: 163 -----------------PSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIG 205
                            P RV+ L  E +  ++ G  H LA  EDG L+ WG +  G++G
Sbjct: 172 WTWGQPWPPGDIKQISVPVRVQGL--ENVRLIAVGAFHNLALKEDGTLWAWGNNEYGQLG 229

Query: 206 NLGKALESSPLD-SNIDRSSESDQEI---SSSTIEKAQKLVSEGM------------EKE 249
                  S P+    +D  +  D       S+ +    ++   G             +  
Sbjct: 230 TGDTQPRSYPIPVQGLDDLTLVDIAAGGWHSTALTNEGEVYGWGRGEHGRLGFGDNDKSS 289

Query: 250 KYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVD 309
           K +P   +  L+ G +++ ++CG  HS+ L R+G + S G   +G+LG  ++     P++
Sbjct: 290 KMLPQ--KVNLLAGEDIIQVSCGGTHSVALTRDGRIFSFGRGDHGRLGYGRKVTTGQPLE 347

Query: 310 INFH 313
           +  H
Sbjct: 348 LPIH 351


>gi|15237540|ref|NP_201191.1| protein UV-B resistance 8 [Arabidopsis thaliana]
 gi|10177674|dbj|BAB11034.1| UVB-resistance protein UVR8 [Arabidopsis thaliana]
 gi|21928123|gb|AAM78089.1| AT5g63860/MGI19_6 [Arabidopsis thaliana]
 gi|23308399|gb|AAN18169.1| At5g63860/MGI19_6 [Arabidopsis thaliana]
 gi|332010422|gb|AED97805.1| protein UV-B resistance 8 [Arabidopsis thaliana]
          Length = 440

 Score =  108 bits (269), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 98/353 (27%), Positives = 155/353 (43%), Gaps = 65/353 (18%)

Query: 23  SASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPS-DVTSVSAGHYHSLAVTN 81
           S SG  V S+G G  G LG      G   D + P  +  L    +  ++ G  H LAVT 
Sbjct: 83  SQSGMEVYSWGWGDFGRLG-----HGNSSDLFTPLPIKALHGIRIKQIACGDSHCLAVTM 137

Query: 82  NGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLW 141
            G V +WGRN   QLG G  E       P++++  + + +    A    ++A+ +DG L+
Sbjct: 138 EGEVQSWGRNQNGQLGLGDTEDSLV---PQKIQAFEGIRIKMVAAGAEHTAAVTEDGDLY 194

Query: 142 VWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSAD 201
            WG  + G LGLG D T+ +VP RV +  GEK+  V+ GW H ++ +  G L+ +G+S  
Sbjct: 195 GWGWGRYGNLGLG-DRTDRLVPERVTSTGGEKMSMVACGWRHTISVSYSGALYTYGWSKY 253

Query: 202 GRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLV 261
           G++G+    LE   +   +       + +S+S I +                        
Sbjct: 254 GQLGH--GDLEDHLIPHKL-------EALSNSFISQ------------------------ 280

Query: 262 EGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINF----HPVSI 317
                  I+ G+ H++ L  +G L   G N +GQ+G         PV + F      V +
Sbjct: 281 -------ISGGWRHTMALTSDGKLYGWGWNKFGQVGVGNNLDQCSPVQVRFPDDQKVVQV 333

Query: 318 SSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQL--GRMGPDNVPLVVEGL 368
           S G  H+LA+ E  +         + +WG   + QL  G     N P ++E L
Sbjct: 334 SCGWRHTLAVTERNN---------VFAWGRGTNGQLGIGESVDRNFPKIIEAL 377



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 92/351 (26%), Positives = 137/351 (39%), Gaps = 104/351 (29%)

Query: 58  RVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLD 117
            V   P  V  +SAG  HS+A+ +   V +WGR  + QLG G  E R +      ++G  
Sbjct: 9   EVTAPPRKVLIISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQ 68

Query: 118 QVNVCAAFASGVVSS------------------------------------------AIG 135
            V+V       V  S                                          A G
Sbjct: 69  IVSVTCGADHTVAYSQSGMEVYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIACG 128

Query: 136 D--------DGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQ 187
           D        +G +  WG+++ GQLGLG D  +++VP +++A  G +I  V+ G  H  A 
Sbjct: 129 DSHCLAVTMEGEVQSWGRNQNGQLGLG-DTEDSLVPQKIQAFEGIRIKMVAAGAEHTAAV 187

Query: 188 TEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGME 247
           TEDG L+GWG+   GR GNLG       L    DR                +++ S G E
Sbjct: 188 TEDGDLYGWGW---GRYGNLG-------LGDRTDRLV-------------PERVTSTGGE 224

Query: 248 KEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFP 307
           K                    +ACG+ H++ +  +G L + G + YGQLG    +  + P
Sbjct: 225 KMSM-----------------VACGWRHTISVSYSGALYTYGWSKYGQLGHGDLEDHLIP 267

Query: 308 VDI----NFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLG 354
             +    N     IS G  H++A+              +  WGWN+  Q+G
Sbjct: 268 HKLEALSNSFISQISGGWRHTMALTSDGK---------LYGWGWNKFGQVG 309



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 67/215 (31%), Positives = 104/215 (48%), Gaps = 23/215 (10%)

Query: 32  FGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTS-VSAGHYHSLAVTNNGAVWAWGR 90
           +G G  G LGL     G   D   P RV     +  S V+ G  H+++V+ +GA++ +G 
Sbjct: 196 WGWGRYGNLGL-----GDRTDRLVPERVTSTGGEKMSMVACGWRHTISVSYSGALYTYGW 250

Query: 91  NNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQ 150
           +   QLG G LE       P ++E L    +         + A+  DG L+ WG +K GQ
Sbjct: 251 SKYGQLGHGDLEDHLI---PHKLEALSNSFISQISGGWRHTMALTSDGKLYGWGWNKFGQ 307

Query: 151 LGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIG----- 205
           +G+G ++ +   P +V     +K+V+VS GW H LA TE   +F WG   +G++G     
Sbjct: 308 VGVGNNLDQC-SPVQVRFPDDQKVVQVSCGWRHTLAVTERNNVFAWGRGTNGQLGIGESV 366

Query: 206 --NLGKALESSPLDSNIDRSSESDQEISSSTIEKA 238
             N  K +E+  +D        S Q I SS I+ +
Sbjct: 367 DRNFPKIIEALSVD------GASGQHIESSNIDPS 395


>gi|442319170|ref|YP_007359191.1| RCC1 repeat-containing protein [Myxococcus stipitatus DSM 14675]
 gi|441486812|gb|AGC43507.1| RCC1 repeat-containing protein [Myxococcus stipitatus DSM 14675]
          Length = 1095

 Score =  108 bits (269), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 107/358 (29%), Positives = 171/358 (47%), Gaps = 48/358 (13%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAW 88
           V ++G  S G LG  T+     G    P  VPGL ++ T +SAG  HSL    +G  W W
Sbjct: 219 VWAWGSNSNGQLGDTTA-----GYRMLPALVPGL-TNATGLSAGSNHSLVRQADGTTWVW 272

Query: 89  GRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKR 148
           G N   QLG G   SR+    P++V GL  V+      + + S  +  DG++W WG ++R
Sbjct: 273 GANTYGQLGDGTTTSRSA---PQQVSGLAGVD--GVLGAELHSLVLKSDGTVWTWGSNQR 327

Query: 149 GQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWG-HALAQTEDGKLFGWGYSADGRIGNL 207
           GQLG G    + +VP +V  L+G  +V V+ G G H++A   +G+++ WG++ +G++G  
Sbjct: 328 GQLGDGTQ-EQRLVPVQVMGLSG--VVAVAAGSGQHSVAVMANGEVWTWGHNVEGQLGEG 384

Query: 208 GKALESSPLDSN--IDRSSESDQEIS------SSTI----EKAQKLVSEGMEKEKYMPII 255
             +  + P  S+  ++R+S +             T+    + A+  + +G   ++ +P  
Sbjct: 385 SSSYSAVPKRSHALVERTSVAAGRYHGLASKPDGTVWAWGDNAKGQLGDGTTAQRLLPTQ 444

Query: 256 WEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDIN--FH 313
             P L     +V +A G   SL L  +G + + G N  GQLG         P  +     
Sbjct: 445 -VPGL---TNMVAVAAGHHSSLALKADGTVWAWGDNANGQLGNGSTTDRSNPTQVPGLTG 500

Query: 314 PVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLG------RMGPDNVPLVV 365
            VSI++G GH+LA+    +         + +WG N + QLG      R  P  VP V 
Sbjct: 501 VVSIAAGPGHALAVKADGT---------LWTWGDNNTGQLGDGTTVDRPIPTQVPGVT 549



 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 108/335 (32%), Positives = 159/335 (47%), Gaps = 45/335 (13%)

Query: 56  PTRVPGLPSDVTSVSAGH-YHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVE 114
           P +V GL S V +V+AG   HS+AV  NG VW WG N E QLG G+    A    PKR  
Sbjct: 341 PVQVMGL-SGVVAVAAGSGQHSVAVMANGEVWTWGHNVEGQLGEGSSSYSAV---PKRSH 396

Query: 115 GL-DQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEK 173
            L ++ +V A    G+ S     DG++W WG + +GQLG G    + ++P++V  L    
Sbjct: 397 ALVERTSVAAGRYHGLASK---PDGTVWAWGDNAKGQLGDGT-TAQRLLPTQVPGL--TN 450

Query: 174 IVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSP-----LDSNIDRSSESDQ 228
           +V V+ G   +LA   DG ++ WG +A+G++GN      S+P     L   +  ++    
Sbjct: 451 MVAVAAGHHSSLALKADGTVWAWGDNANGQLGNGSTTDRSNPTQVPGLTGVVSIAAGPGH 510

Query: 229 EISSSTIEKAQKLVSEGMEKEKYM--------PIIWEPFLVEGVE-VVDIACGFDHSLVL 279
            ++   ++    L + G      +        PI   P  V GV  VV +A G  HSLV+
Sbjct: 511 ALA---VKADGTLWTWGDNNTGQLGDGTTVDRPI---PTQVPGVTGVVSVAAGLYHSLVV 564

Query: 280 GRNGVLLSCGSNVYGQLGREKQDMGMFPVDI-NFHP-VSISSGLGHSLAICEVRSSNVTG 337
             +G + + GSN  GQLG     +   P    N    V+I++GL HSLA+    +     
Sbjct: 565 KVDGTVWAWGSNYEGQLGGGTTTIRPVPSQTPNLTGVVAITAGLYHSLALKTDGT----- 619

Query: 338 GARGIVSWGWNRSSQL--GRMGPDNVPLVVEGLEG 370
               + +WG+N   QL  G      VP  V G  G
Sbjct: 620 ----VWAWGYNLHGQLGNGNTTTQQVPTQVPGFSG 650



 Score =  105 bits (261), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 106/340 (31%), Positives = 164/340 (48%), Gaps = 38/340 (11%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAW 88
           V ++GD + G LG      G   D   P R  GL  ++++V AG  HSLA+ ++G VW W
Sbjct: 69  VWAWGDNAYGQLG-----NGSLQDQRVPVRAWGL-WNISAVGAGDLHSLAMKSDGTVWTW 122

Query: 89  GRNNEVQLGRGALESRATWNDPKRVEGLDQ-VNVCAAFASGVVSSAIGDDGSLWVWGKSK 147
           G NN  QLG G    R     P +V GL + V V A F+    S A+  DG++W WG + 
Sbjct: 123 GGNNFGQLGDGTTTGR---QAPVQVPGLGEVVRVAAGFSH---SLALKTDGTVWAWGSNG 176

Query: 148 RGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNL 207
            G+LG G   T+ ++P +V+ L    I  ++ G  H+LA    G+++ WG +++G++G+ 
Sbjct: 177 AGRLGDGT-TTQRLMPVQVQGL--PTIKAIAAGNAHSLALDGTGRVWAWGSNSNGQLGDT 233

Query: 208 GKALESSP-LDSNIDRSSESDQEISSSTIEKAQKLV------SEGMEKEKYMPIIWEPFL 260
                  P L   +  ++      + S + +A          + G   +        P  
Sbjct: 234 TAGYRMLPALVPGLTNATGLSAGSNHSLVRQADGTTWVWGANTYGQLGDGTTTSRSAPQQ 293

Query: 261 VEGVEVVDIACGFD-HSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFHP--VSI 317
           V G+  VD   G + HSLVL  +G + + GSN  GQLG   Q+  + PV +      V++
Sbjct: 294 VSGLAGVDGVLGAELHSLVLKSDGTVWTWGSNQRGQLGDGTQEQRLVPVQVMGLSGVVAV 353

Query: 318 SSGLG-HSLAICEVRSSNVTGGARGIV-SWGWNRSSQLGR 355
           ++G G HS+A+           A G V +WG N   QLG 
Sbjct: 354 AAGSGQHSVAVM----------ANGEVWTWGHNVEGQLGE 383



 Score =  102 bits (255), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 96/307 (31%), Positives = 137/307 (44%), Gaps = 65/307 (21%)

Query: 69  VSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASG 128
           V+AG +H+LAV ++G VWAWG N   QLG G+L+ +     P R  GL   N+ A  A  
Sbjct: 53  VAAGRHHTLAVRSDGTVWAWGDNAYGQLGNGSLQDQRV---PVRAWGL--WNISAVGAGD 107

Query: 129 VVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQT 188
           + S A+  DG++W WG +  GQLG G   T    P +V  L   ++V+V+ G+ H+LA  
Sbjct: 108 LHSLAMKSDGTVWTWGGNNFGQLGDGT-TTGRQAPVQVPGLG--EVVRVAAGFSHSLALK 164

Query: 189 EDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEK 248
            DG ++ WG +  GR+G                                      +G   
Sbjct: 165 TDGTVWAWGSNGAGRLG--------------------------------------DGTTT 186

Query: 249 EKYMPIIWEPFLVEGVEVVD-IACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFP 307
           ++ MP+      V+G+  +  IA G  HSL L   G + + GSN  GQLG       M P
Sbjct: 187 QRLMPV-----QVQGLPTIKAIAAGNAHSLALDGTGRVWAWGSNSNGQLGDTTAGYRMLP 241

Query: 308 VDIN--FHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQL--GRMGPDNVPL 363
             +    +   +S+G  HSL    VR ++ T        WG N   QL  G     + P 
Sbjct: 242 ALVPGLTNATGLSAGSNHSL----VRQADGT-----TWVWGANTYGQLGDGTTTSRSAPQ 292

Query: 364 VVEGLEG 370
            V GL G
Sbjct: 293 QVSGLAG 299



 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 84/270 (31%), Positives = 128/270 (47%), Gaps = 58/270 (21%)

Query: 29   VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAW 88
            V ++G+ ++G LG  T+          PT+VPGL + V +V+AG+ HSLA+  +G VW W
Sbjct: 819  VWTWGNNAKGQLGDGTTT-----RRLVPTQVPGL-TGVVAVAAGYAHSLALKADGTVWGW 872

Query: 89   GRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSS-AIGDDGSLWVWGKSK 147
            G N   QLG G    R     P + +GL    V  + ASG     A   DG+LW WG + 
Sbjct: 873  GENIYGQLGDGTTTQRVA---PTQAQGL---TVVLSMASGTYHGLARKADGTLWAWGYNA 926

Query: 148  RGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNL 207
             GQLG+G   T  + P+ V +L+G  +V +S    H+LA   DG ++ WGY+++G++G  
Sbjct: 927  HGQLGIGTTTTR-LAPTLVPSLSG--VVSLSATHQHSLALKPDGTVWAWGYNSNGQLG-- 981

Query: 208  GKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVV 267
                                                +G    +++P    P L     V 
Sbjct: 982  ------------------------------------DGTTTTRHVPTQ-APSL---SSVK 1001

Query: 268  DIACGFDHSLVLGRNGVLLSCGSNVYGQLG 297
             ++ GF++SL +  +G + S G N  GQLG
Sbjct: 1002 AVSAGFEYSLAVKADGTVWSWGINDRGQLG 1031



 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 106/358 (29%), Positives = 158/358 (44%), Gaps = 60/358 (16%)

Query: 31  SFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGR 90
           ++GD + G LG  T++     D   PT+VPG+ + V SV+AG YHSL V  +G VWAWG 
Sbjct: 522 TWGDNNTGQLGDGTTV-----DRPIPTQVPGV-TGVVSVAAGLYHSLVVKVDGTVWAWGS 575

Query: 91  NNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQ 150
           N E QLG G    R     P +   L    V A  A    S A+  DG++W WG +  GQ
Sbjct: 576 NYEGQLGGGTTTIRPV---PSQTPNL--TGVVAITAGLYHSLALKTDGTVWAWGYNLHGQ 630

Query: 151 LGLGKDITEAIVPSRVEALAGEKIVKVSFGWG--HALAQTEDGKLFGWGYSADGRIGNLG 208
           LG G   T+  VP++V   +G     VS G G  H+LA   DG ++ WGY+  G++G+  
Sbjct: 631 LGNGNTTTQQ-VPTQVPGFSG----GVSLGAGIYHSLAIKTDGSVWTWGYNYRGQLGDGT 685

Query: 209 KA----------------LESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYM 252
                             L +    S   R+  +     S+  +K Q  + +G  +  Y 
Sbjct: 686 TTSRTTPTQVAGFTGVSFLAAGEFHSVALRTDGTAWAWGSN--DKGQ--LGDGSARWHYA 741

Query: 253 PIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDIN- 311
           P      L   V    +A G   +     +G + + G N YGQLG         P  ++ 
Sbjct: 742 PT-----LSRLVGARGLAAGDRFTAARKSDGTVWAWGDNTYGQLGDGTTLATRSPAQVSG 796

Query: 312 -FHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLG------RMGPDNVP 362
                 +++G GH + + ++  +        + +WG N   QLG      R+ P  VP
Sbjct: 797 LTDVEGLAAGEGH-VVVVKMDGT--------VWTWGNNAKGQLGDGTTTRRLVPTQVP 845



 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 100/334 (29%), Positives = 151/334 (45%), Gaps = 57/334 (17%)

Query: 56  PTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEG 115
           PT+VPG    V S+ AG YHSLA+  +G+VW WG N   QLG G   SR T   P +V G
Sbjct: 642 PTQVPGFSGGV-SLGAGIYHSLAIKTDGSVWTWGYNYRGQLGDGTTTSRTT---PTQVAG 697

Query: 116 LDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGK------DITEAIVPSRVEAL 169
              V+  AA      S A+  DG+ W WG + +GQLG G            +V +R  A 
Sbjct: 698 FTGVSFLAAGE--FHSVALRTDGTAWAWGSNDKGQLGDGSARWHYAPTLSRLVGARGLA- 754

Query: 170 AGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLD----SNIDRSSE 225
           AG++            A+  DG ++ WG +  G++G+       SP      ++++  + 
Sbjct: 755 AGDRFTA---------ARKSDGTVWAWGDNTYGQLGDGTTLATRSPAQVSGLTDVEGLAA 805

Query: 226 SDQEISSSTIE--------KAQKLVSEGMEKEKYMPIIWEPFLVEGVE-VVDIACGFDHS 276
            +  +    ++         A+  + +G    + +P       V G+  VV +A G+ HS
Sbjct: 806 GEGHVVVVKMDGTVWTWGNNAKGQLGDGTTTRRLVPT-----QVPGLTGVVAVAAGYAHS 860

Query: 277 LVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFHPV--SISSGLGHSLAICEVRSSN 334
           L L  +G +   G N+YGQLG       + P       V  S++SG  H LA    R ++
Sbjct: 861 LALKADGTVWGWGENIYGQLGDGTTTQRVAPTQAQGLTVVLSMASGTYHGLA----RKAD 916

Query: 335 VTGGARGIVSWGWNRSSQLG------RMGPDNVP 362
            T     + +WG+N   QLG      R+ P  VP
Sbjct: 917 GT-----LWAWGYNAHGQLGIGTTTTRLAPTLVP 945



 Score = 95.5 bits (236), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 79/221 (35%), Positives = 112/221 (50%), Gaps = 22/221 (9%)

Query: 1   MRLLKSVVHNHVNVLTSRIFMRS-----ASGTAVVSFGDGSQGALGLPTSLTGVGGDAYE 55
            RLL + V    N++       S     A GT V ++GD + G LG      G   D   
Sbjct: 438 QRLLPTQVPGLTNMVAVAAGHHSSLALKADGT-VWAWGDNANGQLG-----NGSTTDRSN 491

Query: 56  PTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEG 115
           PT+VPGL + V S++AG  H+LAV  +G +W WG NN  QLG G    R     P +V G
Sbjct: 492 PTQVPGL-TGVVSIAAGPGHALAVKADGTLWTWGDNNTGQLGDGTTVDRPI---PTQVPG 547

Query: 116 LDQVNVCAAFASGVVSS-AIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKI 174
           +  V    + A+G+  S  +  DG++W WG +  GQLG G   T   VPS+   L G  +
Sbjct: 548 VTGV---VSVAAGLYHSLVVKVDGTVWAWGSNYEGQLG-GGTTTIRPVPSQTPNLTG--V 601

Query: 175 VKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSP 215
           V ++ G  H+LA   DG ++ WGY+  G++GN     +  P
Sbjct: 602 VAITAGLYHSLALKTDGTVWAWGYNLHGQLGNGNTTTQQVP 642



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 69/187 (36%), Positives = 96/187 (51%), Gaps = 17/187 (9%)

Query: 20   FMRSASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAV 79
              R A GT + ++G  + G LG+ T+ T        PT VP L S V S+SA H HSLA+
Sbjct: 911  LARKADGT-LWAWGYNAHGQLGIGTTTT-----RLAPTLVPSL-SGVVSLSATHQHSLAL 963

Query: 80   TNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVN-VCAAFASGVVSSAIGDDG 138
              +G VWAWG N+  QLG G   +R   + P +   L  V  V A F     S A+  DG
Sbjct: 964  KPDGTVWAWGYNSNGQLGDGTTTTR---HVPTQAPSLSSVKAVSAGFE---YSLAVKADG 1017

Query: 139  SLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGY 198
            ++W WG + RGQLG G     A  P++V  L    +  +     HAL  + DG + G+G 
Sbjct: 1018 TVWSWGINDRGQLGSGTATPRA-TPTQVAGL--NSVTLLLAARAHALVVSADGTMRGFGD 1074

Query: 199  SADGRIG 205
            +  G++G
Sbjct: 1075 NEAGQLG 1081



 Score = 74.7 bits (182), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 55/160 (34%), Positives = 83/160 (51%), Gaps = 9/160 (5%)

Query: 56   PTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEG 115
            PT+  GL + V S+++G YH LA   +G +WAWG N   QLG G   +R     P  V  
Sbjct: 891  PTQAQGL-TVVLSMASGTYHGLARKADGTLWAWGYNAHGQLGIGTTTTRLA---PTLVPS 946

Query: 116  LDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIV 175
            L    V +  A+   S A+  DG++W WG +  GQLG G   T   VP++  +L+  K V
Sbjct: 947  LS--GVVSLSATHQHSLALKPDGTVWAWGYNSNGQLGDGTTTTRH-VPTQAPSLSSVKAV 1003

Query: 176  KVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSP 215
               F   ++LA   DG ++ WG +  G++G+      ++P
Sbjct: 1004 SAGFE--YSLAVKADGTVWSWGINDRGQLGSGTATPRATP 1041



 Score = 62.4 bits (150), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 51/138 (36%), Positives = 76/138 (55%), Gaps = 12/138 (8%)

Query: 29   VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAW 88
            V ++G  S G LG  T+ T      + PT+ P L S V +VSAG  +SLAV  +G VW+W
Sbjct: 969  VWAWGYNSNGQLGDGTTTT-----RHVPTQAPSL-SSVKAVSAGFEYSLAVKADGTVWSW 1022

Query: 89   GRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKR 148
            G N+  QLG G    RAT   P +V GL+ V +  A  +   +  +  DG++  +G ++ 
Sbjct: 1023 GINDRGQLGSGTATPRAT---PTQVAGLNSVTLLLAARA--HALVVSADGTMRGFGDNEA 1077

Query: 149  GQLGLGKDITEAIVPSRV 166
            GQLG G  +   + P++V
Sbjct: 1078 GQLGAGDTLIR-LAPNQV 1094


>gi|255551398|ref|XP_002516745.1| Ran GTPase binding protein, putative [Ricinus communis]
 gi|223544118|gb|EEF45643.1| Ran GTPase binding protein, putative [Ricinus communis]
          Length = 393

 Score =  108 bits (269), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 63/167 (37%), Positives = 96/167 (57%), Gaps = 5/167 (2%)

Query: 56  PTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEG 115
           P RV GL   V  ++ G +H+LA+  +G +WAWG N   QLG G  + R+    P  V+G
Sbjct: 190 PVRVQGL-EKVKLIAVGAFHNLALQEDGTLWAWGNNEYGQLGTGDTQPRS---QPIPVQG 245

Query: 116 LDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLG-KDITEAIVPSRVEALAGEKI 174
           L  + +    A G  S+A+ DDG ++ WG+ + G+LG G  D +  +VP +V  LAGE I
Sbjct: 246 LSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDI 305

Query: 175 VKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNID 221
           V++S G  H++A T+DG++F +G    GR+G   K     P++   D
Sbjct: 306 VQLSCGGTHSVALTQDGRMFSFGRGDHGRLGYGKKVTTGQPVEVPTD 352



 Score = 92.0 bits (227), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 72/245 (29%), Positives = 119/245 (48%), Gaps = 48/245 (19%)

Query: 66  VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAF 125
           V  V+AG  HS+ +T  G VW WG+        G ++  +    P RV+GL++V + A  
Sbjct: 153 VRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISV---PVRVQGLEKVKLIAVG 205

Query: 126 ASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHAL 185
           A    + A+ +DG+LW WG ++ GQLG G D      P  V+ L+G  +V ++ G  H+ 
Sbjct: 206 A--FHNLALQEDGTLWAWGNNEYGQLGTG-DTQPRSQPIPVQGLSGLTLVDIAAGGWHST 262

Query: 186 AQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEG 245
           A T+DG+++GWG    GR+G             N                +K+ K+V + 
Sbjct: 263 ALTDDGEVYGWGRGEHGRLG----------FGDN----------------DKSSKMVPQK 296

Query: 246 MEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGM 305
           +             L+ G ++V ++CG  HS+ L ++G + S G   +G+LG  K+    
Sbjct: 297 VN------------LLAGEDIVQLSCGGTHSVALTQDGRMFSFGRGDHGRLGYGKKVTTG 344

Query: 306 FPVDI 310
            PV++
Sbjct: 345 QPVEV 349



 Score = 74.3 bits (181), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 81/279 (29%), Positives = 120/279 (43%), Gaps = 35/279 (12%)

Query: 87  AWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKS 146
           AWG   + QLG G  E +  W     V  L+   V +  A    S AI DDG L+ WG +
Sbjct: 9   AWGAGEDGQLGIGINEEKE-W--VCVVNALEPYKVRSVVAGSRNSLAICDDGKLFTWGWN 65

Query: 147 KRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGN 206
           +RG LG   +     +PS+V+AL    IV+ + G  H LA  + G+ + WG +  G+ G 
Sbjct: 66  QRGTLGHPAETKTENIPSQVKALNNVNIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCG- 124

Query: 207 LGKALESSPLDSNIDRSSESDQEISSSTIEK-AQKLVSEG------MEKEKY-------- 251
                E      +  ++   D  I      K   + V+ G      + +E +        
Sbjct: 125 -----EEPERKDDTGKTLRRDIVIPQRCAPKLVVRQVAAGGTHSVVLTREGHVWTWGQPW 179

Query: 252 ----MPIIWEPFLVEGVEVVD-IACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMF 306
               +  I  P  V+G+E V  IA G  H+L L  +G L + G+N YGQLG         
Sbjct: 180 PPGDIKQISVPVRVQGLEKVKLIAVGAFHNLALQEDGTLWAWGNNEYGQLGTGDTQPRSQ 239

Query: 307 PVDIN----FHPVSISSGLGHSLAICEVRSSNVTGGARG 341
           P+ +        V I++G  HS A+ +     V G  RG
Sbjct: 240 PIPVQGLSGLTLVDIAAGGWHSTALTD--DGEVYGWGRG 276



 Score = 47.0 bits (110), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 62/240 (25%), Positives = 91/240 (37%), Gaps = 57/240 (23%)

Query: 139 SLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGY 198
           SL  WG  + GQLG+G +  +  V   V AL   K+  V  G  ++LA  +DGKLF WG+
Sbjct: 6   SLIAWGAGEDGQLGIGINEEKEWV-CVVNALEPYKVRSVVAGSRNSLAICDDGKLFTWGW 64

Query: 199 SADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEP 258
           +  G +G+                 +E+  E   S ++                      
Sbjct: 65  NQRGTLGH----------------PAETKTENIPSQVKA--------------------- 87

Query: 259 FLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGRE---KQDMGMFPVDINFHPV 315
             +  V +V  A G  H L +   G   + G N YGQ G E   K D G          +
Sbjct: 88  --LNNVNIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTG----KTLRRDI 141

Query: 316 SISSGLGHSLAICEVRSSNVTGGARGIV------SWGWNRSSQLGRMGPDNVPLVVEGLE 369
            I       L + +V      GG   +V       W W +    G +   +VP+ V+GLE
Sbjct: 142 VIPQRCAPKLVVRQV----AAGGTHSVVLTREGHVWTWGQPWPPGDIKQISVPVRVQGLE 197


>gi|408501717|ref|YP_006865636.1| putative regulator of chromosome condensation, RCC1 [Bifidobacterium
            asteroides PRL2011]
 gi|408466541|gb|AFU72070.1| putative regulator of chromosome condensation, RCC1 [Bifidobacterium
            asteroides PRL2011]
          Length = 1828

 Score =  107 bits (268), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 99/356 (27%), Positives = 164/356 (46%), Gaps = 66/356 (18%)

Query: 21   MRSASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVT 80
            M  AS   V ++G+  +G LG  T+    G  + EP +     + +T++SAG  +++A+ 
Sbjct: 847  MALASDGTVYTWGNNGKGQLGNGTT----GSYSSEPVKAQTDNAKITAISAGRAYAMALA 902

Query: 81   NNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVN-VCAAFASGVVSSAIGDDGS 139
            ++G V+ WG N + QLG G  +S +T   P +V  L  +  + A F SG   +A+   G 
Sbjct: 903  SDGTVYTWGDNTQGQLGIGNYDSHST---PTKVTALSNITAISAGFTSG---TALDSQGH 956

Query: 140  LWVWGKSKRGQLGLGKDITEAIVPSRVEAL-AGEK----IVKVSFGWGHALAQTEDGKLF 194
             W WG++ +GQLG G     +  P+RV+ L  G+      + +S G+ H LA   D  L+
Sbjct: 957  AWTWGQNDKGQLGNGAP-NRSPTPTRVQDLDTGQPDTRFYIAISAGYQHVLALDTDHDLY 1015

Query: 195  GWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPI 254
            GWG          G A+ S+  D+N+ +              +    +S G E       
Sbjct: 1016 GWG---------SGTAIGST-TDTNVSK--------------RGSTAISFGDEP------ 1045

Query: 255  IWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFHP 314
                     V +  I+ G D S  +  +G + + G   YGQLG    D   + ++    P
Sbjct: 1046 ---------VNITAISAGDDGSEAIDDSGKIYTWGKEAYGQLGNGVYDNTAWQIN----P 1092

Query: 315  VSISSGLGHSLAICEVRSSNVTGGARG----IVSWGWNRSSQLGRMGPDNVPLVVE 366
             +I+  L  S+  C V +S+    A G    + +WG++  +QLGR G  +VP   +
Sbjct: 1093 KTIT--LAQSVKACTVSTSSHHQTAIGSDGLLYTWGYSYYNQLGRTGAISVPGTTQ 1146



 Score = 82.8 bits (203), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 88/326 (26%), Positives = 136/326 (41%), Gaps = 70/326 (21%)

Query: 69   VSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAF--- 125
            VS G  HSLAV ++G  +AWG N+  QLG G+ +S  T   P +V+         A+   
Sbjct: 1331 VSTGKNHSLAVGSDGNAYAWGDNSTGQLGNGSKDSSKT---PVQVKKPSDAGTDFAYTQV 1387

Query: 126  -ASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGE----KIVKVSFG 180
             A    S A+G DG+ + WG + RGQLG G        P +V+  +G        +VS G
Sbjct: 1388 SAGYGFSLALGSDGNAYAWGDNGRGQLGKGAAGGTNTTPVQVKKPSGAGTDFAYTQVSAG 1447

Query: 181  WGHALAQTEDGKLFGWG-YSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQ 239
              H+LA  +D + + WG  S  G++G+ G    ++P    ++ S+ S             
Sbjct: 1448 GYHSLAVGKDHQAYAWGDRSNGGQVGD-GNTTGNAPAPVAVNASATS------------- 1493

Query: 240  KLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGRE 299
                                   G +V  ++ G+ HSL++G +G   + G    G+LG  
Sbjct: 1494 ----------------------PGFQVRQVSAGYQHSLIIGISGQTYAWGYGDSGRLGNN 1531

Query: 300  KQDMGMFPV-----------DINFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWN 348
             +     PV            I F    +S+G  HSLAI         G      +WG N
Sbjct: 1532 AKSSQATPVSVSSPVKYEDGSIGFFATQVSAGGSHSLAI---------GRDGKAYAWGAN 1582

Query: 349  RSSQLGRMGPDN--VPLVVEGLEGES 372
               +LG    ++  +P +V   +G S
Sbjct: 1583 TDGRLGTGDTNDAAIPTLVANPDGGS 1608



 Score = 79.0 bits (193), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 53/152 (34%), Positives = 84/152 (55%), Gaps = 11/152 (7%)

Query: 69  VSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRV---EGLDQVNVCAAF 125
           VSAGH H+LAV ++G V+AWG N++ +LG     ++   N P R+   E +      +  
Sbjct: 223 VSAGHDHTLAVGSDGHVYAWGDNSKGELGDSTTINK---NTPVRITENEAIKGKTFISVS 279

Query: 126 ASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHAL 185
           A    S A+  DG+++ WG + RG+LG G   T + VP  V+A     I  +S G+ HA+
Sbjct: 280 AGTTFSMALASDGTVYTWGDNSRGELGNGS-TTNSSVP--VKANLNATITAISAGYWHAM 336

Query: 186 AQTEDGKLFGWGYSADGRIGN--LGKALESSP 215
           A +  G ++ WG +  G++GN   G  + +SP
Sbjct: 337 ALSSSGTIYTWGDNEYGQLGNGHTGVNVNASP 368



 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 75/272 (27%), Positives = 112/272 (41%), Gaps = 59/272 (21%)

Query: 69   VSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVN---VCAAF 125
             SAG YH+LAV ++G V+AWG  N+   G G  ++  T   P R+   D +      A  
Sbjct: 783  ASAGRYHTLAVGSDGHVYAWG--NQASGGLGNSKNSGTATTPVRITENDAIKGKIFIAVS 840

Query: 126  ASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHAL 185
            A    S A+  DG+++ WG + +GQLG G   + +  P + +     KI  +S G  +A+
Sbjct: 841  AGDAYSMALASDGTVYTWGNNGKGQLGNGTTGSYSSEPVKAQ-TDNAKITAISAGRAYAM 899

Query: 186  AQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEG 245
            A   DG ++ WG +  G++G +G          N D         S ST  K   L    
Sbjct: 900  ALASDGTVYTWGDNTQGQLG-IG----------NYD---------SHSTPTKVTAL---- 935

Query: 246  MEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGR------- 298
                                +  I+ GF     L   G   + G N  GQLG        
Sbjct: 936  ------------------SNITAISAGFTSGTALDSQGHAWTWGQNDKGQLGNGAPNRSP 977

Query: 299  ---EKQDMGMFPVDINFHPVSISSGLGHSLAI 327
                 QD+     D  F+ ++IS+G  H LA+
Sbjct: 978  TPTRVQDLDTGQPDTRFY-IAISAGYQHVLAL 1008



 Score = 65.5 bits (158), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 47/190 (24%), Positives = 82/190 (43%), Gaps = 51/190 (26%)

Query: 133 AIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRV---EALAGEKIVKVSFGWGHALAQTE 189
           A+G DG ++ WG + +G+LG    I +   P R+   EA+ G+  + VS G   ++A   
Sbjct: 232 AVGSDGHVYAWGDNSKGELGDSTTINKN-TPVRITENEAIKGKTFISVSAGTTFSMALAS 290

Query: 190 DGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKE 249
           DG ++ WG ++ G +GN      S P+ +N++ +                          
Sbjct: 291 DGTVYTWGDNSRGELGNGSTTNSSVPVKANLNAT-------------------------- 324

Query: 250 KYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVD 309
                           +  I+ G+ H++ L  +G + + G N YGQLG      G   V+
Sbjct: 325 ----------------ITAISAGYWHAMALSSSGTIYTWGDNEYGQLGN-----GHTGVN 363

Query: 310 INFHPVSISS 319
           +N  P ++SS
Sbjct: 364 VNASPAAVSS 373



 Score = 65.1 bits (157), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 82/311 (26%), Positives = 138/311 (44%), Gaps = 52/311 (16%)

Query: 21  MRSASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVT 80
           M  AS   V ++GD S+G LG      G   ++  P +   L + +T++SAG++H++A++
Sbjct: 286 MALASDGTVYTWGDNSRGELG-----NGSTTNSSVPVKA-NLNATITAISAGYWHAMALS 339

Query: 81  NNGAVWAWGRNNEVQLGRGALESRATWNDPKRV--EGLDQVNVCAAFASGVVSSAIGDDG 138
           ++G ++ WG N   QLG G          P  V   G+    + A +      +A+   G
Sbjct: 340 SSGTIYTWGDNEYGQLGNGHTGVNVN-ASPAAVSSSGVTFTTISAGYD---FQTALDSQG 395

Query: 139 SLWVWGKSKRGQLGLGK-DITEA----IVPSRVEALA-----GEKIVKVSFGWGHALAQT 188
             + WG+++ GQL +G  D T +      PSR+   +           +  G+ H LA +
Sbjct: 396 HAYAWGRNQGGQLSIGTMDGTSSGSNVYTPSRIYGDSTGNPDSTVYTDIDAGYLHVLALS 455

Query: 189 EDGKLFGWGY--------SADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQK 240
             GK++ WGY        +AD  + +   +L S P  +    S+ S  + SS+ ++ A  
Sbjct: 456 NSGKVYYWGYPLTKGDDPNAD-SVHSFYPSLVSLPTGAATPVSA-SAGDYSSAVVDSAGS 513

Query: 241 L----------VSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFD---HSLVLGRNGVLLS 287
           L          + +G  K K          + GV V      FD   HSL +G +G+  S
Sbjct: 514 LYMFGSNSSGQLGDGTTKPK---STMTEVSLTGVTV----AAFDVCRHSLAIGSDGLPYS 566

Query: 288 CGSNVYGQLGR 298
            G    G+LG+
Sbjct: 567 WGEAKSGKLGQ 577



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 39/118 (33%), Positives = 60/118 (50%), Gaps = 4/118 (3%)

Query: 63   PSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVC 122
            P ++T++SAG   S A+ ++G ++ WG+    QLG G  ++ A   +PK +     V  C
Sbjct: 1045 PVNITAISAGDDGSEAIDDSGKIYTWGKEAYGQLGNGVYDNTAWQINPKTITLAQSVKAC 1104

Query: 123  AAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFG 180
                S    +AIG DG L+ WG S   QLG    I+   VP   ++     ++KV FG
Sbjct: 1105 TVSTSSHHQTAIGSDGLLYTWGYSYYNQLGRTGAIS---VPGTTQSPQ-ITLIKVVFG 1158



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 52/159 (32%), Positives = 75/159 (47%), Gaps = 17/159 (10%)

Query: 60   PGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRAT---WNDPKRVE-- 114
            PG    V  VSAG+ HSL +  +G  +AWG  +  +LG  A  S+AT    + P + E  
Sbjct: 1494 PGF--QVRQVSAGYQHSLIIGISGQTYAWGYGDSGRLGNNAKSSQATPVSVSSPVKYEDG 1551

Query: 115  --GLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVE----A 168
              G     V A    G  S AIG DG  + WG +  G+LG G D  +A +P+ V      
Sbjct: 1552 SIGFFATQVSAG---GSHSLAIGRDGKAYAWGANTDGRLGTG-DTNDAAIPTLVANPDGG 1607

Query: 169  LAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNL 207
              G K  ++S G        + GK++ WG +    +GN+
Sbjct: 1608 SDGFKPTEISAGGWFCAGIDDKGKIYTWGSNGHNALGNV 1646



 Score = 48.9 bits (115), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 40/115 (34%), Positives = 61/115 (53%), Gaps = 7/115 (6%)

Query: 68  SVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFAS 127
           S SAG Y S  V + G+++ +G N+  QLG G  + ++T  +      L  V V AAF  
Sbjct: 497 SASAGDYSSAVVDSAGSLYMFGSNSSGQLGDGTTKPKSTMTEVS----LTGVTV-AAFDV 551

Query: 128 GVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKI--VKVSFG 180
              S AIG DG  + WG++K G+LG G    ++   ++  A+   +I   KV+FG
Sbjct: 552 CRHSLAIGSDGLPYSWGEAKSGKLGQGSKGPQSGSQTKPAAVGPPQIDLAKVTFG 606



 Score = 48.5 bits (114), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 45/188 (23%), Positives = 73/188 (38%), Gaps = 50/188 (26%)

Query: 171 GEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEI 230
           G +  +VS G  H LA   DG ++ WG ++ G +G+                        
Sbjct: 217 GVRFAQVSAGHDHTLAVGSDGHVYAWGDNSKGELGD------------------------ 252

Query: 231 SSSTIEKAQKLVSEGMEKEKYMPI-IWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCG 289
            S+TI K               P+ I E   ++G   + ++ G   S+ L  +G + + G
Sbjct: 253 -STTINKN-------------TPVRITENEAIKGKTFISVSAGTTFSMALASDGTVYTWG 298

Query: 290 SNVYGQLGREKQDMGMFPVDINFHP--VSISSGLGHSLAICEVRSSNVTGGARGIVSWGW 347
            N  G+LG         PV  N +    +IS+G  H++A+    +         I +WG 
Sbjct: 299 DNSRGELGNGSTTNSSVPVKANLNATITAISAGYWHAMALSSSGT---------IYTWGD 349

Query: 348 NRSSQLGR 355
           N   QLG 
Sbjct: 350 NEYGQLGN 357



 Score = 45.1 bits (105), Expect = 0.053,   Method: Compositional matrix adjust.
 Identities = 49/176 (27%), Positives = 81/176 (46%), Gaps = 16/176 (9%)

Query: 47  TGVGGDAYEPTRV----PGLPSDV--TSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGA 100
           T  G + Y P+R+     G P     T + AG+ H LA++N+G V+ WG      L +G 
Sbjct: 416 TSSGSNVYTPSRIYGDSTGNPDSTVYTDIDAGYLHVLALSNSGKVYYWG----YPLTKGD 471

Query: 101 LESRATWND--PKRVEGLDQVNVCAAFASGVVSSAIGDD-GSLWVWGKSKRGQLGLGKDI 157
             +  + +   P  V          + ++G  SSA+ D  GSL+++G +  GQLG G   
Sbjct: 472 DPNADSVHSFYPSLVSLPTGAATPVSASAGDYSSAVVDSAGSLYMFGSNSSGQLGDGTTK 531

Query: 158 TEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALES 213
            ++ +     +L G  +        H+LA   DG  + WG +  G++G   K  +S
Sbjct: 532 PKSTMTEV--SLTGVTVAAFDV-CRHSLAIGSDGLPYSWGEAKSGKLGQGSKGPQS 584



 Score = 38.9 bits (89), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 30/120 (25%), Positives = 50/120 (41%), Gaps = 16/120 (13%)

Query: 254 IIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFH 313
           I   P    GV    ++ G DH+L +G +G + + G N  G+LG         PV I  +
Sbjct: 208 ITLTPPKPRGVRFAQVSAGHDHTLAVGSDGHVYAWGDNSKGELGDSTTINKNTPVRITEN 267

Query: 314 P-------VSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPDNVPLVVE 366
                   +S+S+G   S+A+    +         + +WG N   +LG     N  + V+
Sbjct: 268 EAIKGKTFISVSAGTTFSMALASDGT---------VYTWGDNSRGELGNGSTTNSSVPVK 318


>gi|296189284|ref|XP_002742715.1| PREDICTED: RCC1 and BTB domain-containing protein 2 isoform 2
           [Callithrix jacchus]
          Length = 577

 Score =  107 bits (268), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 62/176 (35%), Positives = 98/176 (55%), Gaps = 5/176 (2%)

Query: 66  VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAF 125
           V  V+ G YHSL +T++G V+AWG NN  Q+G G+  ++ T   P+RV G  Q  V    
Sbjct: 180 VIEVACGSYHSLVLTSDGEVFAWGYNNSGQVGSGSTVNQPT---PRRVTGCLQNKVVVTI 236

Query: 126 ASG-VVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHA 184
           A G +   A+ D G ++VWG +  GQLGLG    +   P RV AL G ++ +V+ G+ H 
Sbjct: 237 ACGQMCCMAVVDSGEVYVWGYNGNGQLGLGNSGNQP-TPCRVAALQGIRVQRVACGYAHT 295

Query: 185 LAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQK 240
           L  T++G+++ WG ++ G++G   K+ +S P    +++    +     ST   A K
Sbjct: 296 LVLTDEGQVYAWGANSYGQLGTGNKSNQSYPTPVTVEKDRIIEIAACHSTHTSAAK 351



 Score = 85.9 bits (211), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 70/289 (24%), Positives = 128/289 (44%), Gaps = 25/289 (8%)

Query: 77  LAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNV-CAAFASGVVSSAIG 135
           L  T N  ++  G N    LG G ++S     +P+R++ L    + C ++ SG       
Sbjct: 85  LYTTVNDEIFVLGTNCCGCLGLGDVQSTI---EPRRLDSLSGKKIACLSYGSGPHIVLAT 141

Query: 136 DDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEA-LAGEKIVKVSFGWGHALAQTEDGKLF 194
            +G ++ WG +   QLG G      +VP  +   L+ +++++V+ G  H+L  T DG++F
Sbjct: 142 TEGEVFTWGHNAYSQLGNGT-TNHGLVPCHISTNLSNKQVIEVACGSYHSLVLTSDGEVF 200

Query: 195 GWGYSADGRIGNLGKALESSP------LDSNIDRSSESDQEISSSTIEKAQKLV------ 242
            WGY+  G++G+     + +P      L + +  +    Q    + ++  +  V      
Sbjct: 201 AWGYNNSGQVGSGSTVNQPTPRRVTGCLQNKVVVTIACGQMCCMAVVDSGEVYVWGYNGN 260

Query: 243 -SEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQ 301
              G+      P       ++G+ V  +ACG+ H+LVL   G + + G+N YGQLG   +
Sbjct: 261 GQLGLGNSGNQPTPCRVAALQGIRVQRVACGYAHTLVLTDEGQVYAWGANSYGQLGTGNK 320

Query: 302 DMGMFPVDINFHPVSISSGLGHSLAICEVRSSNVTGGARG-IVSWGWNR 349
               +P      PV++       +A C    ++      G +  WG  R
Sbjct: 321 SNQSYPT-----PVTVEKDRIIEIAACHSTHTSAAKTQGGHVYMWGQCR 364



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 65/252 (25%), Positives = 108/252 (42%), Gaps = 63/252 (25%)

Query: 129 VVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWG-HALAQ 187
           V+ + + D+  ++V G +  G LGLG D+   I P R+++L+G+KI  +S+G G H +  
Sbjct: 84  VLYTTVNDE--IFVLGTNCCGCLGLG-DVQSTIEPRRLDSLSGKKIACLSYGSGPHIVLA 140

Query: 188 TEDGKLFGWGYSADGRIGN--LGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEG 245
           T +G++F WG++A  ++GN      L    + +N+                         
Sbjct: 141 TTEGEVFTWGHNAYSQLGNGTTNHGLVPCHISTNLSNK---------------------- 178

Query: 246 MEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGM 305
                              +V+++ACG  HSLVL  +G + + G N  GQ+G        
Sbjct: 179 -------------------QVIEVACGSYHSLVLTSDGEVFAWGYNNSGQVGSGSTVNQP 219

Query: 306 FPVDI-----NFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQ--LGRMGP 358
            P  +     N   V+I+ G    +A+       V  G   +  WG+N + Q  LG  G 
Sbjct: 220 TPRRVTGCLQNKVVVTIACGQMCCMAV-------VDSGE--VYVWGYNGNGQLGLGNSGN 270

Query: 359 DNVPLVVEGLEG 370
              P  V  L+G
Sbjct: 271 QPTPCRVAALQG 282


>gi|261405028|ref|YP_003241269.1| hypothetical protein GYMC10_1173 [Paenibacillus sp. Y412MC10]
 gi|261281491|gb|ACX63462.1| Listeria/Bacterioides repeat protein [Paenibacillus sp. Y412MC10]
          Length = 1280

 Score =  107 bits (268), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 95/320 (29%), Positives = 162/320 (50%), Gaps = 42/320 (13%)

Query: 69  VSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASG 128
           + AG+YH+ ++ ++G V++WG  +  QLG G   +R T   P   + L+ V       SG
Sbjct: 38  IVAGYYHTASLVSSGEVYSWGYGDRGQLGDGTWNTRTT---PVMAKNLNHV---IDIHSG 91

Query: 129 VVSS-AIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQ 187
           V SS A+  DG++W WG ++ GQLG+G  IT    P++V  L+G K +     + H +A 
Sbjct: 92  VRSSMALRQDGTVWTWGANENGQLGIGT-ITNVNAPAQVPGLSGIKAISGGLAY-HGMAL 149

Query: 188 TEDGKLFGWGYSADGRIGNLGKALESSPL-------------DSNIDRSSESDQEISSST 234
           +E+G ++ WG + +G +GN     ++SP+                   + +SD  + +  
Sbjct: 150 SENGTVWTWGKNDNGELGNGTTIQQNSPVLVAGLSDVTAIAAGGYYSLALKSDGTVWAWG 209

Query: 235 IEKAQKLVSEGMEKEKYMPIIWEPFLVEGV-EVVDIACGFDHSLVLGRNGVLLSCGSNVY 293
           +  + +L  +G   ++++P+      V G+ +V+ IA G  HSL + ++G + + G+N Y
Sbjct: 210 VNGSGEL-GDGTTTDRHVPV-----QVAGLTDVMAIAAGGSHSLAIKQDGTVWAWGNNTY 263

Query: 294 GQLGREKQDMGMFPVDINF--HPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSS 351
           G LG   +     PV +    H V+++ G  HSLA+   R+ NV        SWG N   
Sbjct: 264 GTLGDGTRTHRTRPVQVRNLQHIVAVAGGGYHSLAVD--RAGNVW-------SWGDNSQQ 314

Query: 352 QLG--RMGPDNVPLVVEGLE 369
           QLG        +P+ V G+E
Sbjct: 315 QLGLNSNASSLIPVPVPGIE 334



 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 101/354 (28%), Positives = 155/354 (43%), Gaps = 71/354 (20%)

Query: 4   LKSVVHNHVNVLTSRIFMRSASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLP 63
           L  V+  H  V +S    +  +   V ++G    G LG+ T +T V      P +VPGL 
Sbjct: 82  LNHVIDIHSGVRSSMALRQDGT---VWTWGANENGQLGIGT-ITNVNA----PAQVPGL- 132

Query: 64  SDVTSVSAG-HYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVC 122
           S + ++S G  YH +A++ NG VW WG+N+  +LG G    +   N P  V GL  V   
Sbjct: 133 SGIKAISGGLAYHGMALSENGTVWTWGKNDNGELGNGTTIQQ---NSPVLVAGLSDVTAI 189

Query: 123 AAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWG 182
           A  A G  S A+  DG++W WG +  G+LG G   T+  VP +V  L    ++ ++ G  
Sbjct: 190 A--AGGYYSLALKSDGTVWAWGVNGSGELGDGT-TTDRHVPVQVAGLT--DVMAIAAGGS 244

Query: 183 HALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLV 242
           H+LA  +DG ++ WG +  G +G+  +   + P+                  +   Q +V
Sbjct: 245 HSLAIKQDGTVWAWGNNTYGTLGDGTRTHRTRPVQ-----------------VRNLQHIV 287

Query: 243 SEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQD 302
           +                         +A G  HSL + R G + S G N   QLG     
Sbjct: 288 A-------------------------VAGGGYHSLAVDRAGNVWSWGDNSQQQLGLNSNA 322

Query: 303 MGMFPVDIN--FHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLG 354
             + PV +    H   IS+G  HS+A+   +   V G       WG+N   Q+G
Sbjct: 323 SSLIPVPVPGIEHVREISAGGFHSVAMK--KDGTVWG-------WGYNSGGQIG 367



 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 56/159 (35%), Positives = 91/159 (57%), Gaps = 9/159 (5%)

Query: 48  GVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATW 107
           G   D + P +V GL +DV +++AG  HSLA+  +G VWAWG N    LG G   +R   
Sbjct: 219 GTTTDRHVPVQVAGL-TDVMAIAAGGSHSLAIKQDGTVWAWGNNTYGTLGDG---TRTHR 274

Query: 108 NDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVE 167
             P +V  L   ++ A    G  S A+   G++W WG + + QLGL  + + +++P  V 
Sbjct: 275 TRPVQVRNLQ--HIVAVAGGGYHSLAVDRAGNVWSWGDNSQQQLGLNSNAS-SLIPVPVP 331

Query: 168 ALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGN 206
            +  E + ++S G  H++A  +DG ++GWGY++ G+IG+
Sbjct: 332 GI--EHVREISAGGFHSVAMKKDGTVWGWGYNSGGQIGD 368



 Score = 61.2 bits (147), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 47/139 (33%), Positives = 71/139 (51%), Gaps = 11/139 (7%)

Query: 31  SFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGR 90
           ++G+ + G LG      G       P +V  L   + +V+ G YHSLAV   G VW+WG 
Sbjct: 257 AWGNNTYGTLG-----DGTRTHRTRPVQVRNL-QHIVAVAGGGYHSLAVDRAGNVWSWGD 310

Query: 91  NNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQ 150
           N++ QLG   L S A+   P  V G++ V   +A   G  S A+  DG++W WG +  GQ
Sbjct: 311 NSQQQLG---LNSNASSLIPVPVPGIEHVREISA--GGFHSVAMKKDGTVWGWGYNSGGQ 365

Query: 151 LGLGKDITEAIVPSRVEAL 169
           +G G       +P+  +A+
Sbjct: 366 IGDGTYNNTRGIPTLTKAV 384


>gi|296189286|ref|XP_002742716.1| PREDICTED: RCC1 and BTB domain-containing protein 2 isoform 3
           [Callithrix jacchus]
          Length = 556

 Score =  107 bits (268), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 62/176 (35%), Positives = 98/176 (55%), Gaps = 5/176 (2%)

Query: 66  VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAF 125
           V  V+ G YHSL +T++G V+AWG NN  Q+G G+  ++ T   P+RV G  Q  V    
Sbjct: 159 VIEVACGSYHSLVLTSDGEVFAWGYNNSGQVGSGSTVNQPT---PRRVTGCLQNKVVVTI 215

Query: 126 ASG-VVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHA 184
           A G +   A+ D G ++VWG +  GQLGLG    +   P RV AL G ++ +V+ G+ H 
Sbjct: 216 ACGQMCCMAVVDSGEVYVWGYNGNGQLGLGNSGNQP-TPCRVAALQGIRVQRVACGYAHT 274

Query: 185 LAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQK 240
           L  T++G+++ WG ++ G++G   K+ +S P    +++    +     ST   A K
Sbjct: 275 LVLTDEGQVYAWGANSYGQLGTGNKSNQSYPTPVTVEKDRIIEIAACHSTHTSAAK 330



 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 70/289 (24%), Positives = 128/289 (44%), Gaps = 25/289 (8%)

Query: 77  LAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNV-CAAFASGVVSSAIG 135
           L  T N  ++  G N    LG G ++S     +P+R++ L    + C ++ SG       
Sbjct: 64  LYTTVNDEIFVLGTNCCGCLGLGDVQSTI---EPRRLDSLSGKKIACLSYGSGPHIVLAT 120

Query: 136 DDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEA-LAGEKIVKVSFGWGHALAQTEDGKLF 194
            +G ++ WG +   QLG G      +VP  +   L+ +++++V+ G  H+L  T DG++F
Sbjct: 121 TEGEVFTWGHNAYSQLGNGT-TNHGLVPCHISTNLSNKQVIEVACGSYHSLVLTSDGEVF 179

Query: 195 GWGYSADGRIGNLGKALESSP------LDSNIDRSSESDQEISSSTIEKAQKLV------ 242
            WGY+  G++G+     + +P      L + +  +    Q    + ++  +  V      
Sbjct: 180 AWGYNNSGQVGSGSTVNQPTPRRVTGCLQNKVVVTIACGQMCCMAVVDSGEVYVWGYNGN 239

Query: 243 -SEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQ 301
              G+      P       ++G+ V  +ACG+ H+LVL   G + + G+N YGQLG   +
Sbjct: 240 GQLGLGNSGNQPTPCRVAALQGIRVQRVACGYAHTLVLTDEGQVYAWGANSYGQLGTGNK 299

Query: 302 DMGMFPVDINFHPVSISSGLGHSLAICEVRSSNVTGGARG-IVSWGWNR 349
               +P      PV++       +A C    ++      G +  WG  R
Sbjct: 300 SNQSYPT-----PVTVEKDRIIEIAACHSTHTSAAKTQGGHVYMWGQCR 343



 Score = 61.2 bits (147), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 65/252 (25%), Positives = 108/252 (42%), Gaps = 63/252 (25%)

Query: 129 VVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWG-HALAQ 187
           V+ + + D+  ++V G +  G LGLG D+   I P R+++L+G+KI  +S+G G H +  
Sbjct: 63  VLYTTVNDE--IFVLGTNCCGCLGLG-DVQSTIEPRRLDSLSGKKIACLSYGSGPHIVLA 119

Query: 188 TEDGKLFGWGYSADGRIGN--LGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEG 245
           T +G++F WG++A  ++GN      L    + +N+                         
Sbjct: 120 TTEGEVFTWGHNAYSQLGNGTTNHGLVPCHISTNLSNK---------------------- 157

Query: 246 MEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGM 305
                              +V+++ACG  HSLVL  +G + + G N  GQ+G        
Sbjct: 158 -------------------QVIEVACGSYHSLVLTSDGEVFAWGYNNSGQVGSGSTVNQP 198

Query: 306 FPVDI-----NFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQ--LGRMGP 358
            P  +     N   V+I+ G    +A+       V  G   +  WG+N + Q  LG  G 
Sbjct: 199 TPRRVTGCLQNKVVVTIACGQMCCMAV-------VDSGE--VYVWGYNGNGQLGLGNSGN 249

Query: 359 DNVPLVVEGLEG 370
              P  V  L+G
Sbjct: 250 QPTPCRVAALQG 261


>gi|5478530|gb|AAD43920.1|AF130441_1 UVB-resistance protein UVR8 [Arabidopsis thaliana]
          Length = 440

 Score =  107 bits (268), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 98/353 (27%), Positives = 155/353 (43%), Gaps = 65/353 (18%)

Query: 23  SASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPS-DVTSVSAGHYHSLAVTN 81
           S SG  V S+G G  G LG      G   D + P  +  L    +  ++ G  H LAVT 
Sbjct: 83  SQSGMEVYSWGWGDFGRLG-----HGNSSDLFTPLPIKALHGIRIKQIACGDSHCLAVTM 137

Query: 82  NGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLW 141
            G V +WGRN   QLG G  E       P++++  + + +    A    ++A+ +DG L+
Sbjct: 138 EGEVQSWGRNQNGQLGLGDTEDSLV---PQKIQAFEGIPIKMVAAGAEHTAAVTEDGDLY 194

Query: 142 VWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSAD 201
            WG  + G LGLG D T+ +VP RV +  GEK+  V+ GW H ++ +  G L+ +G+S  
Sbjct: 195 GWGWGRYGNLGLG-DRTDRLVPERVTSTGGEKMSMVACGWRHTISVSYSGALYTYGWSKY 253

Query: 202 GRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLV 261
           G++G+    LE   +   +       + +S+S I +                        
Sbjct: 254 GQLGH--GDLEDHLIPHKL-------EALSNSFISQ------------------------ 280

Query: 262 EGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINF----HPVSI 317
                  I+ G+ H++ L  +G L   G N +GQ+G         PV + F      V +
Sbjct: 281 -------ISGGWRHTMALTSDGKLYGWGWNKFGQVGVGNNLDQCSPVQVRFPDDQKVVQV 333

Query: 318 SSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQL--GRMGPDNVPLVVEGL 368
           S G  H+LA+ E  +         + +WG   + QL  G     N P ++E L
Sbjct: 334 SCGWRHTLAVTERNN---------VFAWGRGTNGQLGIGESVDRNFPKIIEAL 377



 Score = 89.0 bits (219), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 92/351 (26%), Positives = 136/351 (38%), Gaps = 104/351 (29%)

Query: 58  RVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLD 117
            V   P  V  +SAG  HS+A+ +   V +WGR  + QLG G  E R +      ++G  
Sbjct: 9   EVTAPPRKVLIISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQ 68

Query: 118 QVNVCAAFASGVVSS------------------------------------------AIG 135
            V+V       V  S                                          A G
Sbjct: 69  IVSVTCGADHTVAYSQSGMEVYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIACG 128

Query: 136 D--------DGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQ 187
           D        +G +  WG+++ GQLGLG D  +++VP +++A  G  I  V+ G  H  A 
Sbjct: 129 DSHCLAVTMEGEVQSWGRNQNGQLGLG-DTEDSLVPQKIQAFEGIPIKMVAAGAEHTAAV 187

Query: 188 TEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGME 247
           TEDG L+GWG+   GR GNLG       L    DR                +++ S G E
Sbjct: 188 TEDGDLYGWGW---GRYGNLG-------LGDRTDRLV-------------PERVTSTGGE 224

Query: 248 KEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFP 307
           K                    +ACG+ H++ +  +G L + G + YGQLG    +  + P
Sbjct: 225 KMSM-----------------VACGWRHTISVSYSGALYTYGWSKYGQLGHGDLEDHLIP 267

Query: 308 VDI----NFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLG 354
             +    N     IS G  H++A+              +  WGWN+  Q+G
Sbjct: 268 HKLEALSNSFISQISGGWRHTMALTSDGK---------LYGWGWNKFGQVG 309



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 67/215 (31%), Positives = 104/215 (48%), Gaps = 23/215 (10%)

Query: 32  FGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTS-VSAGHYHSLAVTNNGAVWAWGR 90
           +G G  G LGL     G   D   P RV     +  S V+ G  H+++V+ +GA++ +G 
Sbjct: 196 WGWGRYGNLGL-----GDRTDRLVPERVTSTGGEKMSMVACGWRHTISVSYSGALYTYGW 250

Query: 91  NNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQ 150
           +   QLG G LE       P ++E L    +         + A+  DG L+ WG +K GQ
Sbjct: 251 SKYGQLGHGDLEDHLI---PHKLEALSNSFISQISGGWRHTMALTSDGKLYGWGWNKFGQ 307

Query: 151 LGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIG----- 205
           +G+G ++ +   P +V     +K+V+VS GW H LA TE   +F WG   +G++G     
Sbjct: 308 VGVGNNLDQC-SPVQVRFPDDQKVVQVSCGWRHTLAVTERNNVFAWGRGTNGQLGIGESV 366

Query: 206 --NLGKALESSPLDSNIDRSSESDQEISSSTIEKA 238
             N  K +E+  +D        S Q I SS I+ +
Sbjct: 367 DRNFPKIIEALSVD------GASGQHIESSNIDPS 395


>gi|444729790|gb|ELW70194.1| putative E3 ubiquitin-protein ligase HERC6 [Tupaia chinensis]
          Length = 1378

 Score =  107 bits (267), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 84/287 (29%), Positives = 133/287 (46%), Gaps = 41/287 (14%)

Query: 42  LPTSLTGVGGDAYEPTRVPGLPS-DVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGA 100
           LP  L      + +P ++    +  V  VS G  HSLAV + G V+AWG  +E QLG G 
Sbjct: 74  LPALLREESAPSSKPEQIQAFETLRVDLVSCGKEHSLAVCHKGRVFAWGAGSEGQLGIGE 133

Query: 101 LESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEA 160
            + R+    P++++ L  + +         S A+ +DG ++ WGK+  GQLGLGK++   
Sbjct: 134 FKERSF--TPQKIKALAGIKIIQVSCGYYHSLALSEDGQVFSWGKNSHGQLGLGKEVPSQ 191

Query: 161 IVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNI 220
             P RV +L G  + +V+ G  H+ A +  G  FGWG ++ G++   G     +P+    
Sbjct: 192 TSPQRVRSLEGIPLAQVAAGGAHSFALSLSGTSFGWGSNSAGQLALSGT---KAPV---- 244

Query: 221 DRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLG 280
                                       ++Y P+        G  VV I+CG +H+ VL 
Sbjct: 245 ----------------------------QRYKPLSVGALKTLG--VVYISCGSEHTAVLT 274

Query: 281 RNGVLLSCGSNVYGQLGREKQDMGMFPVD-INFHPVSISSGLGHSLA 326
           +NG + + G+N  GQLG   +  G   V+ I+     I  G  H+LA
Sbjct: 275 QNGAVYTFGANSSGQLGHSAEQRGPQCVERIDGLVSQIDCGSYHTLA 321



 Score = 81.3 bits (199), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 55/181 (30%), Positives = 95/181 (52%), Gaps = 9/181 (4%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPS-DVTSVSAGHYHSLAVTNNGAVWA 87
           V ++G GS+G LG+          ++ P ++  L    +  VS G+YHSLA++ +G V++
Sbjct: 118 VFAWGAGSEGQLGI----GEFKERSFTPQKIKALAGIKIIQVSCGYYHSLALSEDGQVFS 173

Query: 88  WGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSK 147
           WG+N+  QLG G  +   +   P+RV  L+ + +    A G  S A+   G+ + WG + 
Sbjct: 174 WGKNSHGQLGLG--KEVPSQTSPQRVRSLEGIPLAQVAAGGAHSFALSLSGTSFGWGSNS 231

Query: 148 RGQLGLG--KDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIG 205
            GQL L   K   +   P  V AL    +V +S G  H    T++G ++ +G ++ G++G
Sbjct: 232 AGQLALSGTKAPVQRYKPLSVGALKTLGVVYISCGSEHTAVLTQNGAVYTFGANSSGQLG 291

Query: 206 N 206
           +
Sbjct: 292 H 292



 Score = 79.3 bits (194), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 59/185 (31%), Positives = 96/185 (51%), Gaps = 16/185 (8%)

Query: 29   VVSFGDGSQGALGL----PTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGA 84
            + ++G  S G LGL    P+S T    +      + G+P  +  +SAG  HS+A++  G 
Sbjct: 915  LFAWGQNSHGQLGLGRIFPSSPTPQIVE-----HLAGVP--LVQISAGEAHSMALSMTGN 967

Query: 85   VWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWG 144
            V++WG+N+  QLG G  ES+   + P  +  LD   V      G  ++ +  DG ++ +G
Sbjct: 968  VYSWGKNDFGQLGLGHTESK---DSPSLLRALDSQKVDFLACGGSHTALLTQDGLVFTFG 1024

Query: 145  KSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQ-TEDGKLFGWGYSADGR 203
              K GQLG      E + P  V  L G ++ +++ G  H LA  +E GK+F +G   +G+
Sbjct: 1025 AGKYGQLGHSSTRDE-LRPCLVTELLGNRVTQIACGRWHTLAYVSELGKVFAFGSGKNGQ 1083

Query: 204  IGNLG 208
            +GN G
Sbjct: 1084 LGNCG 1088



 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 59/229 (25%), Positives = 95/229 (41%), Gaps = 52/229 (22%)

Query: 138  GSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWG 197
            G L+ WG++  GQLGLG+    +  P  VE LAG  +V++S G  H++A +  G ++ WG
Sbjct: 913  GELFAWGQNSHGQLGLGRIFPSSPTPQIVEHLAGVPLVQISAGEAHSMALSMTGNVYSWG 972

Query: 198  YSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWE 257
             +  G++G LG               +ES    S      +QK                 
Sbjct: 973  KNDFGQLG-LGH--------------TESKDSPSLLRALDSQK----------------- 1000

Query: 258  PFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDIN----FH 313
                    V  +ACG  H+ +L ++G++ + G+  YGQLG       + P  +       
Sbjct: 1001 --------VDFLACGGSHTALLTQDGLVFTFGAGKYGQLGHSSTRDELRPCLVTELLGNR 1052

Query: 314  PVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPDNVP 362
               I+ G  H+LA               + ++G  ++ QLG  G  N P
Sbjct: 1053 VTQIACGRWHTLA--------YVSELGKVFAFGSGKNGQLGNCGTHNQP 1093



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 64/216 (29%), Positives = 95/216 (43%), Gaps = 44/216 (20%)

Query: 83   GAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWV 142
            G ++AWG+N+  QLG G +   +    P+ VE L  V +    A    S A+   G+++ 
Sbjct: 913  GELFAWGQNSHGQLGLGRIFPSSP--TPQIVEHLAGVPLVQISAGEAHSMALSMTGNVYS 970

Query: 143  WGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADG 202
            WGK+  GQLGLG   ++   PS + AL  +K+  ++ G  H    T+DG +F +G    G
Sbjct: 971  WGKNDFGQLGLGHTESKD-SPSLLRALDSQKVDFLACGGSHTALLTQDGLVFTFG---AG 1026

Query: 203  RIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVE 262
            + G LG                      SS+  E    LV+E +                
Sbjct: 1027 KYGQLGH---------------------SSTRDELRPCLVTELL---------------- 1049

Query: 263  GVEVVDIACGFDHSLV-LGRNGVLLSCGSNVYGQLG 297
            G  V  IACG  H+L  +   G + + GS   GQLG
Sbjct: 1050 GNRVTQIACGRWHTLAYVSELGKVFAFGSGKNGQLG 1085



 Score = 43.1 bits (100), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 44/161 (27%), Positives = 70/161 (43%), Gaps = 13/161 (8%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRV---PGLPSDVTSVSAGHYHSLAVTNNGAV 85
           V S+G  S G LGL   +         P RV    G+P  +  V+AG  HS A++ +G  
Sbjct: 171 VFSWGKNSHGQLGLGKEVPSQTS----PQRVRSLEGIP--LAQVAAGGAHSFALSLSGTS 224

Query: 86  WAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGK 145
           + WG N+  QL     ++      P  V  L  + V         ++ +  +G+++ +G 
Sbjct: 225 FGWGSNSAGQLALSGTKAPVQRYKPLSVGALKTLGVVYISCGSEHTAVLTQNGAVYTFGA 284

Query: 146 SKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALA 186
           +  GQLG      E   P  VE + G  + ++  G  H LA
Sbjct: 285 NSSGQLGHS---AEQRGPQCVERIDG-LVSQIDCGSYHTLA 321


>gi|91204161|emb|CAJ71814.1| conserved hypothetical protein [Candidatus Kuenenia
           stuttgartiensis]
          Length = 411

 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 81/267 (30%), Positives = 132/267 (49%), Gaps = 28/267 (10%)

Query: 56  PTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEG 115
           P +V  +  DVT + AG YHS+A+ ++G VW WG N   QLG G   +++    P +V+G
Sbjct: 129 PVKVKTI-KDVTEIDAGFYHSIALQSDGTVWVWGNNELDQLGDG---TKSDAYKPMQVQG 184

Query: 116 LDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIV 175
           L+  NV A       +  +  DG++W WG +  GQLG G  +TE+ +P+ V    G   V
Sbjct: 185 LN--NVVAVSGGNHHNLVLKADGTIWGWGANGYGQLGDGT-MTESSIPTPVYDFNGA--V 239

Query: 176 KVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSS----------- 224
            ++ G  + +A   DG ++GWG +  G++GN  +     P+  N   +S           
Sbjct: 240 FIASGNNYNVAVKADGSIWGWGMNTYGQLGNGTQTNSKIPIRINGLNNSVSIATGGYHAL 299

Query: 225 --ESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGV-EVVDIACGFDHSLVLGR 281
             + D  + S    +  +L +      +Y  +      V G+ +VV IA G+ HSL L +
Sbjct: 300 ILQQDGTVLSMGYNRTGQLGTGATSNYQYTTL-----KVHGLSDVVSIAAGYYHSLALKK 354

Query: 282 NGVLLSCGSNVYGQLGREKQDMGMFPV 308
           +G + + G+N YGQLG    +    P+
Sbjct: 355 DGTIWAWGNNEYGQLGDGTLNYKKLPI 381



 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 95/318 (29%), Positives = 144/318 (45%), Gaps = 64/318 (20%)

Query: 58  RVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGL- 116
           +V GL  DV S++AG  H+LAV ++G VWAWG N   QLG G  E+R   N P +V+ + 
Sbjct: 81  QVKGL-EDVVSIAAGWEHNLAVKSDGTVWAWGNNRFGQLGDGTNENR---NTPVKVKTIK 136

Query: 117 DQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVK 176
           D   + A F   +   A+  DG++WVWG ++  QLG G   ++A  P +V+ L    +V 
Sbjct: 137 DVTEIDAGFYHSI---ALQSDGTVWVWGNNELDQLGDGTK-SDAYKPMQVQGL--NNVVA 190

Query: 177 VSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIE 236
           VS G  H L    DG ++GWG +  G++G                               
Sbjct: 191 VSGGNHHNLVLKADGTIWGWGANGYGQLG------------------------------- 219

Query: 237 KAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQL 296
                  +G   E  +P     F       V IA G ++++ +  +G +   G N YGQL
Sbjct: 220 -------DGTMTESSIPTPVYDF----NGAVFIASGNNYNVAVKADGSIWGWGMNTYGQL 268

Query: 297 GREKQDMGMFPVDIN--FHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLG 354
           G   Q     P+ IN   + VSI++G  H+L + +  +         ++S G+NR+ QLG
Sbjct: 269 GNGTQTNSKIPIRINGLNNSVSIATGGYHALILQQDGT---------VLSMGYNRTGQLG 319

Query: 355 RMGPDNVPLVVEGLEGES 372
                N       + G S
Sbjct: 320 TGATSNYQYTTLKVHGLS 337



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 63/241 (26%), Positives = 101/241 (41%), Gaps = 62/241 (25%)

Query: 48  GVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATW 107
           G   DAY+P +V GL ++V +VS G++H+L +  +G +W WG N   QLG G +   +  
Sbjct: 171 GTKSDAYKPMQVQGL-NNVVAVSGGNHHNLVLKADGTIWGWGANGYGQLGDGTMTESSI- 228

Query: 108 NDPKRVEGLDQVNVCAAFASGV-VSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRV 166
             P  V      N     ASG   + A+  DGS+W WG +  GQLG G   T + +P R+
Sbjct: 229 --PTPVY---DFNGAVFIASGNNYNVAVKADGSIWGWGMNTYGQLGNGTQ-TNSKIPIRI 282

Query: 167 EALAGE-------------------------------------------------KIVKV 177
             L                                                     +V +
Sbjct: 283 NGLNNSVSIATGGYHALILQQDGTVLSMGYNRTGQLGTGATSNYQYTTLKVHGLSDVVSI 342

Query: 178 SFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEK 237
           + G+ H+LA  +DG ++ WG +  G++G+     +  P+ S I    + DQ I+ +  E 
Sbjct: 343 AAGYYHSLALKKDGTIWAWGNNEYGQLGDGTLNYKKLPILSQI----KLDQTITPAPKED 398

Query: 238 A 238
           +
Sbjct: 399 S 399



 Score = 55.1 bits (131), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 35/97 (36%), Positives = 54/97 (55%), Gaps = 5/97 (5%)

Query: 12  VNVLTSRIFMRSASGTAVVSFGDGSQGALGLP-TSLTGVGGDA---YEPTRVPGLPSDVT 67
           +N L + + + +    A++   DG+  ++G   T   G G  +   Y   +V GL SDV 
Sbjct: 282 INGLNNSVSIATGGYHALILQQDGTVLSMGYNRTGQLGTGATSNYQYTTLKVHGL-SDVV 340

Query: 68  SVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESR 104
           S++AG+YHSLA+  +G +WAWG N   QLG G L  +
Sbjct: 341 SIAAGYYHSLALKKDGTIWAWGNNEYGQLGDGTLNYK 377


>gi|115374127|ref|ZP_01461415.1| BNR repeat domain protein [Stigmatella aurantiaca DW4/3-1]
 gi|115368903|gb|EAU67850.1| BNR repeat domain protein [Stigmatella aurantiaca DW4/3-1]
          Length = 479

 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 88/261 (33%), Positives = 129/261 (49%), Gaps = 17/261 (6%)

Query: 56  PTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEG 115
           P +VPGL   V +V+ G+ HSLA+  +G VWAWG N+  QLG G      T   P  V G
Sbjct: 213 PVQVPGL-QGVVAVAGGYMHSLALCADGTVWAWGFNDYGQLGNGTTVHSPT---PVPVPG 268

Query: 116 LDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIV 175
           L QV   AA   G  S A+  DG++W WG +  GQLG     T+   P RVE L   ++V
Sbjct: 269 LSQVVSVAA--GGFHSLALCADGTVWAWGNNGFGQLGEAVS-TQRTKPGRVEGL--REVV 323

Query: 176 KVSFGWGHALAQTEDGKLFGWGYSADGRIGN--LGKALESSPLDSNIDRSSESDQEISSS 233
            V+ G+ H+LA    G L+ WG +  G++GN     +   +P+      +S +   + S 
Sbjct: 324 AVAGGFYHSLAVRAGGSLWSWGNNYSGQLGNGSFSSSARPAPVQGLGAVTSVAAGGMHSV 383

Query: 234 TIEKAQKLVSEGMEKEKYM-----PIIWEPFLVEGVE-VVDIACGFDHSLVLGRNGVLLS 287
            ++    + + G  +E  +     P    P  V G++  V +A GF HSL +   G L +
Sbjct: 384 AVQADGTVWAWGRNEEGQLGHERAPERATPVRVPGLQGEVAVAAGFYHSLSVQAGGSLWA 443

Query: 288 CGSNVYGQLGREKQDMGMFPV 308
            G N +GQLG  +  +   P 
Sbjct: 444 WGLNDFGQLGDSEAPLMPVPA 464



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 109/321 (33%), Positives = 145/321 (45%), Gaps = 66/321 (20%)

Query: 56  PTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEG 115
           P  VPGL S   +V+AG  H+LA+  +G VWAWG N   QLG G+   RAT   P +V G
Sbjct: 163 PRPVPGL-SRAVAVAAGGSHALALCADGTVWAWGNNGYGQLGNGSTAHRAT---PVQVPG 218

Query: 116 LDQVNVCAAFASGVVSS-AIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKI 174
           L  V    A A G + S A+  DG++W WG +  GQLG G  +     P+ V      ++
Sbjct: 219 LQGV---VAVAGGYMHSLALCADGTVWAWGFNDYGQLGNGTTVHS---PTPVPVPGLSQV 272

Query: 175 VKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSST 234
           V V+ G  H+LA   DG ++ WG   +   G LG+A+ +                     
Sbjct: 273 VSVAAGGFHSLALCADGTVWAWG---NNGFGQLGEAVST--------------------- 308

Query: 235 IEKAQKLVSEGMEKEKYMPIIWEPFLVEGV-EVVDIACGFDHSLVLGRNGVLLSCGSNVY 293
                       ++ K       P  VEG+ EVV +A GF HSL +   G L S G+N  
Sbjct: 309 ------------QRTK-------PGRVEGLREVVAVAGGFYHSLAVRAGGSLWSWGNNYS 349

Query: 294 GQLGREKQDMGMFPVDINFHPVSISSGLGHSLAICEVRSSNVTGGARGIV-SWGWNRSSQ 352
           GQLG      G F       PV    GLG   ++      +V   A G V +WG N   Q
Sbjct: 350 GQLGN-----GSFSSSARPAPV---QGLGAVTSVAAGGMHSVAVQADGTVWAWGRNEEGQ 401

Query: 353 LG--RMGPDNVPLVVEGLEGE 371
           LG  R      P+ V GL+GE
Sbjct: 402 LGHERAPERATPVRVPGLQGE 422



 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 64/161 (39%), Positives = 90/161 (55%), Gaps = 9/161 (5%)

Query: 55  EPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVE 114
           +P RV GL  +V +V+ G YHSLAV   G++W+WG N   QLG G+  S A    P  V+
Sbjct: 312 KPGRVEGL-REVVAVAGGFYHSLAVRAGGSLWSWGNNYSGQLGNGSFSSSA---RPAPVQ 367

Query: 115 GLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKI 174
           GL  V   A  A G+ S A+  DG++W WG+++ GQLG  +   E   P RV  L GE  
Sbjct: 368 GLGAVTSVA--AGGMHSVAVQADGTVWAWGRNEEGQLGH-ERAPERATPVRVPGLQGE-- 422

Query: 175 VKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSP 215
           V V+ G+ H+L+    G L+ WG +  G++G+    L   P
Sbjct: 423 VAVAAGFYHSLSVQAGGSLWAWGLNDFGQLGDSEAPLMPVP 463



 Score = 69.7 bits (169), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 62/156 (39%), Positives = 79/156 (50%), Gaps = 17/156 (10%)

Query: 25  SGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGA 84
           +G ++ S+G+   G LG      G    +  P  V GL   VTSV+AG  HS+AV  +G 
Sbjct: 337 AGGSLWSWGNNYSGQLG-----NGSFSSSARPAPVQGL-GAVTSVAAGGMHSVAVQADGT 390

Query: 85  VWAWGRNNEVQLGRGALESRATWNDPKRVEGLD-QVNVCAAFASGVVSSAIGDDGSLWVW 143
           VWAWGRN E QLG      RAT   P RV GL  +V V A F     S ++   GSLW W
Sbjct: 391 VWAWGRNEEGQLGHERAPERAT---PVRVPGLQGEVAVAAGFYH---SLSVQAGGSLWAW 444

Query: 144 GKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSF 179
           G +  GQLG   D    ++P      A  K  +V+F
Sbjct: 445 GLNDFGQLG---DSEAPLMPVPAPGWAQGK-ARVAF 476



 Score = 65.5 bits (158), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 87/304 (28%), Positives = 123/304 (40%), Gaps = 66/304 (21%)

Query: 55  EPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVE 114
            P +  GL   + +++A   H +A+  +G  W      E   G  A + RAT       +
Sbjct: 62  SPVQALGL-GGMAALAACCVHGMALRASGGGWTLRGLGEGAGGGEASKHRAT-----PAQ 115

Query: 115 GLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKI 174
             DQ  V A       S A+  DG++W  G +  GQLG G     +  P  V  L   + 
Sbjct: 116 AADQRGVRAVAGGYQYSLALHADGTVWACGSNSAGQLGNGTTAARS-APRPVPGL--SRA 172

Query: 175 VKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSST 234
           V V+ G  HALA   DG ++ WG +  G++GN                          ST
Sbjct: 173 VAVAAGGSHALALCADGTVWAWGNNGYGQLGN-------------------------GST 207

Query: 235 IEKAQKLVSEGMEKEKYMPIIWEPFLVEGVE-VVDIACGFDHSLVLGRNGVLLSCGSNVY 293
             +A                   P  V G++ VV +A G+ HSL L  +G + + G N Y
Sbjct: 208 AHRA------------------TPVQVPGLQGVVAVAGGYMHSLALCADGTVWAWGFNDY 249

Query: 294 GQLGREKQDMGMFPVDIN--FHPVSISSGLGHSLAICEVRSSNVTGGARGIV-SWGWNRS 350
           GQLG         PV +      VS+++G  HSLA+C          A G V +WG N  
Sbjct: 250 GQLGNGTTVHSPTPVPVPGLSQVVSVAAGGFHSLALC----------ADGTVWAWGNNGF 299

Query: 351 SQLG 354
            QLG
Sbjct: 300 GQLG 303



 Score = 43.5 bits (101), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 37/110 (33%), Positives = 52/110 (47%), Gaps = 15/110 (13%)

Query: 266 VVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGR--EKQDMGMFPVDINFHPVSISSGLGH 323
           V  +A G+ +SL L  +G + +CGSN  GQLG           PV      V++++G  H
Sbjct: 122 VRAVAGGYQYSLALHADGTVWACGSNSAGQLGNGTTAARSAPRPVPGLSRAVAVAAGGSH 181

Query: 324 SLAICEVRSSNVTGGARGIV-SWGWNRSSQLGR--MGPDNVPLVVEGLEG 370
           +LA+C          A G V +WG N   QLG         P+ V GL+G
Sbjct: 182 ALALC----------ADGTVWAWGNNGYGQLGNGSTAHRATPVQVPGLQG 221


>gi|326674002|ref|XP_001334658.4| PREDICTED: RCC1 and BTB domain-containing protein 2 [Danio rerio]
          Length = 527

 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 59/158 (37%), Positives = 95/158 (60%), Gaps = 5/158 (3%)

Query: 66  VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAF 125
           VT VS G +H++A+T +G V+AWG NN  Q+G G+  ++ T   P+RV    Q  V    
Sbjct: 130 VTEVSCGSHHTIALTTDGEVYAWGYNNSGQVGSGSTANQPT---PRRVSSCLQNKVVVNI 186

Query: 126 ASG-VVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHA 184
           A G + S A+ D+G  + WG +  GQLGLG +  +   P R+ AL G  I++V+ G+ H 
Sbjct: 187 ACGQLCSMAVLDNGETYGWGYNCNGQLGLGNNGNQQ-TPCRIAALQGINIIQVACGYAHT 245

Query: 185 LAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDR 222
           LA T++G ++ WG ++ G++G   K+ ++ P   N+D+
Sbjct: 246 LALTDEGFVYSWGANSYGQLGTGNKSNQAVPTLINMDK 283



 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 68/257 (26%), Positives = 123/257 (47%), Gaps = 29/257 (11%)

Query: 76  SLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCA-AFASG---VVS 131
           ++ VT N  V+A G N    LG G  +S     +P+R++ L    + + ++ +G   V++
Sbjct: 34  AIYVTVNDEVFALGTNCSGCLGLGDTQSTI---EPRRIDILCGKKIISLSYGTGPHVVIA 90

Query: 132 SAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEA-LAGEKIVKVSFGWGHALAQTED 190
           +A   DG ++ WG +   QLG G      + P+ V   L G+++ +VS G  H +A T D
Sbjct: 91  TA---DGEVYAWGHNGYSQLGNGT-TNHGLTPALVSTNLIGKRVTEVSCGSHHTIALTTD 146

Query: 191 GKLFGWGYSADGRIGNLGKALESSP------LDSNIDRSSESDQEISSSTIEKAQKL--- 241
           G+++ WGY+  G++G+   A + +P      L + +  +    Q  S + ++  +     
Sbjct: 147 GEVYAWGYNNSGQVGSGSTANQPTPRRVSSCLQNKVVVNIACGQLCSMAVLDNGETYGWG 206

Query: 242 ------VSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQ 295
                 +  G    +  P       ++G+ ++ +ACG+ H+L L   G + S G+N YGQ
Sbjct: 207 YNCNGQLGLGNNGNQQTPC--RIAALQGINIIQVACGYAHTLALTDEGFVYSWGANSYGQ 264

Query: 296 LGREKQDMGMFPVDINF 312
           LG   +     P  IN 
Sbjct: 265 LGTGNKSNQAVPTLINM 281



 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 77/279 (27%), Positives = 120/279 (43%), Gaps = 37/279 (13%)

Query: 110 PKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEAL 169
           P+ +  + Q  V  + A+  +   + D+  ++  G +  G LGLG D    I P R++ L
Sbjct: 15  PEELRLIRQACVFGSAANEAIYVTVNDE--VFALGTNCSGCLGLG-DTQSTIEPRRIDIL 71

Query: 170 AGEKIVKVSFGWG-HALAQTEDGKLFGWGYSADGRIGN------LGKALESSPL--DSNI 220
            G+KI+ +S+G G H +  T DG+++ WG++   ++GN      L  AL S+ L      
Sbjct: 72  CGKKIISLSYGTGPHVVIATADGEVYAWGHNGYSQLGNGTTNHGLTPALVSTNLIGKRVT 131

Query: 221 DRSSESDQEISSSTIEKAQK-------LVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGF 273
           + S  S   I+ +T  +           V  G    +  P      L   V VV+IACG 
Sbjct: 132 EVSCGSHHTIALTTDGEVYAWGYNNSGQVGSGSTANQPTPRRVSSCLQNKV-VVNIACGQ 190

Query: 274 DHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDI----NFHPVSISSGLGHSLAICE 329
             S+ +  NG     G N  GQLG         P  I      + + ++ G  H+LA+ +
Sbjct: 191 LCSMAVLDNGETYGWGYNCNGQLGLGNNGNQQTPCRIAALQGINIIQVACGYAHTLALTD 250

Query: 330 VRSSNVTGGARGIV-SWGWNRSSQLGRMGPDN--VPLVV 365
                      G V SWG N   QLG     N  VP ++
Sbjct: 251 ----------EGFVYSWGANSYGQLGTGNKSNQAVPTLI 279


>gi|383455292|ref|YP_005369281.1| hypothetical protein COCOR_03305 [Corallococcus coralloides DSM
           2259]
 gi|380729146|gb|AFE05148.1| hypothetical protein COCOR_03305 [Corallococcus coralloides DSM
           2259]
          Length = 744

 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 95/313 (30%), Positives = 152/313 (48%), Gaps = 36/313 (11%)

Query: 56  PTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEG 115
           P ++PGL S + S+ +G   S+AV ++G VWAWGRN++ QLG G L +R    DP +V+G
Sbjct: 87  PGQLPGL-SGMVSIDSGDDFSMAVRSDGTVWAWGRNDDGQLGDGTLSTRG---DPVQVQG 142

Query: 116 LDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIV 175
           L  V   A  A+   S A+  DGS+W WG +  GQLG G  I     P  V  L  +++V
Sbjct: 143 LSGVTTVALGATH--SLALCYDGSVWAWGANDHGQLGDGTSIARR-TPQMVAGL--QEVV 197

Query: 176 KVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSP-----LDSNIDRSSESDQEI 230
            V+ G  H+LA   DG ++ WG + DG++G+        P     L   +  +S +   +
Sbjct: 198 AVAAGANHSLAVLSDGTVWAWGENYDGQLGDGTTVTRRVPVPIQGLSGIVAVASGTSHSL 257

Query: 231 SSSTI-------EKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNG 283
           +                 + +G    +  P+     + E   +V +  G D+S+ +  +G
Sbjct: 258 ALRYDGNVWAWGSNYSGQLGDGSSLSRSSPV----QVTELSGIVSVEGGPDYSMAVRYDG 313

Query: 284 VLLSCGSNVYGQLGREKQDMGMFPVDINFHP--VSISSGLGHSLAICEVRSSNVTGGARG 341
            + + G N YGQLG         PV  +     V++++G  H+LA+   R++N       
Sbjct: 314 TVWTWGINTYGQLGDGTTIARSVPVQTSGLSGVVAVAAGRTHALAM---RANN------S 364

Query: 342 IVSWGWNRSSQLG 354
           I +WG N + Q G
Sbjct: 365 IWAWGGNVNGQRG 377



 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 107/355 (30%), Positives = 169/355 (47%), Gaps = 39/355 (10%)

Query: 28  AVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWA 87
           +V ++G    G LG  TS+         P  V GL  +V +V+AG  HSLAV ++G VWA
Sbjct: 164 SVWAWGANDHGQLGDGTSIA-----RRTPQMVAGL-QEVVAVAAGANHSLAVLSDGTVWA 217

Query: 88  WGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSS-AIGDDGSLWVWGKS 146
           WG N + QLG G   +R     P  ++GL  +    A ASG   S A+  DG++W WG +
Sbjct: 218 WGENYDGQLGDGTTVTRRV---PVPIQGLSGI---VAVASGTSHSLALRYDGNVWAWGSN 271

Query: 147 KRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGN 206
             GQLG G  ++ +  P +V  L+G  IV V  G  +++A   DG ++ WG +  G++G+
Sbjct: 272 YSGQLGDGSSLSRS-SPVQVTELSG--IVSVEGGPDYSMAVRYDGTVWTWGINTYGQLGD 328

Query: 207 LGKALESSPLDSN---------IDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWE 257
                 S P+ ++           R+       ++S       +   G   ++   + + 
Sbjct: 329 GTTIARSVPVQTSGLSGVVAVAAGRTHALAMRANNSIWAWGGNV--NGQRGDESRSVYFS 386

Query: 258 PFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFHPVSI 317
           P  +   EVV +A   DHSL +  +G L + G+N  GQLG         P ++  + VS+
Sbjct: 387 PRTILN-EVVTMAATNDHSLAVRSDGGLWAWGANNEGQLGDGTTKNRWAPAEVLGNVVSV 445

Query: 318 SSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQL--GRMGPDNVPLVVEGLEG 370
           ++G  HSLA+ +  S         + +WG N   QL  G      +P+ V G+ G
Sbjct: 446 AAGRRHSLAVRDDGS---------LWAWGSNTVGQLGDGTGSSRTIPMQVPGISG 491



 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 104/371 (28%), Positives = 158/371 (42%), Gaps = 85/371 (22%)

Query: 64  SDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCA 123
           ++V +++A + HSLAV ++G +WAWG NNE QLG G  ++R     P  V G    NV +
Sbjct: 392 NEVVTMAATNDHSLAVRSDGGLWAWGANNEGQLGDGTTKNRWA---PAEVLG----NVVS 444

Query: 124 AFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAI---------------------- 161
             A    S A+ DDGSLW WG +  GQLG G   +  I                      
Sbjct: 445 VAAGRRHSLAVRDDGSLWAWGSNTVGQLGDGTGSSRTIPMQVPGISGIASVAAGSDYSVA 504

Query: 162 ---------------------------VPSRVEALAGEKIVKVSFGWGHALAQTEDGKLF 194
                                      VP+RV+ L+G  IV ++ G GH LA   +G ++
Sbjct: 505 LRYDRTLWAWGENSYGQLGDGTTVNRHVPTRVQGLSG--IVAIATGNGHMLAVRSNGTVW 562

Query: 195 GWGYSADGRIGNLGKALESSPLDSNI--DRSSESDQEISSSTIEKAQKLVSEGMEKEKYM 252
            WG ++ G++G+      ++P+   +     + +     S  +     L + G+     +
Sbjct: 563 AWGDNSSGQLGDGTTINRATPVQVQVLSGIVAVAAGAAHSLAVRYDGTLWAWGINNTSQL 622

Query: 253 ------PIIWEPFLVEGV-EVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGM 305
                 P +  P  V+G+   V ++    HSL +  +G L   G+N YGQLGR + +   
Sbjct: 623 GDGTGIPRL-VPTQVQGIGSAVAVSAAKHHSLAVLADGTLWDWGANNYGQLGRNQDNTNP 681

Query: 306 FPVDIN--------FHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMG 357
            P  +               S G GHSLA+   RS         +V WG N   QLG   
Sbjct: 682 TPSKVTTLTGVTEAVGTFGYSIGFGHSLAL---RSDGY------LVGWGHNTYGQLGTGV 732

Query: 358 PDNVPLVVEGL 368
           P+N+P+ V  L
Sbjct: 733 PENIPVPVLSL 743



 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 89/267 (33%), Positives = 129/267 (48%), Gaps = 50/267 (18%)

Query: 31  SFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGR 90
           ++G+ S G LG  T++     + + PTRV GL S + +++ G+ H LAV +NG VWAWG 
Sbjct: 513 AWGENSYGQLGDGTTV-----NRHVPTRVQGL-SGIVAIATGNGHMLAVRSNGTVWAWGD 566

Query: 91  NNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQ 150
           N+  QLG G   +RAT   P +V+ L  +   AA A+   S A+  DG+LW WG +   Q
Sbjct: 567 NSSGQLGDGTTINRAT---PVQVQVLSGIVAVAAGAAH--SLAVRYDGTLWAWGINNTSQ 621

Query: 151 LGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKA 210
           LG G  I   +VP++V+ +     V VS    H+LA   DG L+ WG +  G++G     
Sbjct: 622 LGDGTGIPR-LVPTQVQGIG--SAVAVSAAKHHSLAVLADGTLWDWGANNYGQLGR---- 674

Query: 211 LESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIA 270
                           +Q+ ++ T  K   L                  + E V     +
Sbjct: 675 ----------------NQDNTNPTPSKVTTLTG----------------VTEAVGTFGYS 702

Query: 271 CGFDHSLVLGRNGVLLSCGSNVYGQLG 297
            GF HSL L  +G L+  G N YGQLG
Sbjct: 703 IGFGHSLALRSDGYLVGWGHNTYGQLG 729



 Score = 89.0 bits (219), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 102/330 (30%), Positives = 158/330 (47%), Gaps = 44/330 (13%)

Query: 56  PTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEG 115
           P +  GL S V +V+AG  H+LA+  N ++WAWG N   Q G    ESR+ +  P+ +  
Sbjct: 337 PVQTSGL-SGVVAVAAGRTHALAMRANNSIWAWGGNVNGQRGD---ESRSVYFSPRTI-- 390

Query: 116 LDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIV 175
           L++V   A  A+   S A+  DG LW WG +  GQLG G        P+ V       +V
Sbjct: 391 LNEVVTMA--ATNDHSLAVRSDGGLWAWGANNEGQLGDGT-TKNRWAPAEVLG----NVV 443

Query: 176 KVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLD----SNIDR-SSESDQEI 230
            V+ G  H+LA  +DG L+ WG +  G++G+   +  + P+     S I   ++ SD  +
Sbjct: 444 SVAAGRRHSLAVRDDGSLWAWGSNTVGQLGDGTGSSRTIPMQVPGISGIASVAAGSDYSV 503

Query: 231 S---SSTI----EKAQKLVSEGMEKEKYMPIIWEPFLVEGVE-VVDIACGFDHSLVLGRN 282
           +     T+    E +   + +G    +++P       V+G+  +V IA G  H L +  N
Sbjct: 504 ALRYDRTLWAWGENSYGQLGDGTTVNRHVPT-----RVQGLSGIVAIATGNGHMLAVRSN 558

Query: 283 GVLLSCGSNVYGQLGREKQDMGMFPVDINF--HPVSISSGLGHSLAICEVRSSNVTGGAR 340
           G + + G N  GQLG         PV +      V++++G  HSLA   VR         
Sbjct: 559 GTVWAWGDNSSGQLGDGTTINRATPVQVQVLSGIVAVAAGAAHSLA---VRYDGT----- 610

Query: 341 GIVSWGWNRSSQLGRMG--PDNVPLVVEGL 368
            + +WG N +SQLG     P  VP  V+G+
Sbjct: 611 -LWAWGINNTSQLGDGTGIPRLVPTQVQGI 639



 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 70/181 (38%), Positives = 97/181 (53%), Gaps = 16/181 (8%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAW 88
           V ++GD S G LG  T++     +   P +V  L S + +V+AG  HSLAV  +G +WAW
Sbjct: 561 VWAWGDNSSGQLGDGTTI-----NRATPVQVQVL-SGIVAVAAGAAHSLAVRYDGTLWAW 614

Query: 89  GRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKR 148
           G NN  QLG G    R     P +V+G+   +  A  A+   S A+  DG+LW WG +  
Sbjct: 615 GINNTSQLGDGTGIPRLV---PTQVQGIG--SAVAVSAAKHHSLAVLADGTLWDWGANNY 669

Query: 149 GQLGLGKDITEAIVPSRVEALAGEK----IVKVSFGWGHALAQTEDGKLFGWGYSADGRI 204
           GQLG  +D T    PS+V  L G          S G+GH+LA   DG L GWG++  G++
Sbjct: 670 GQLGRNQDNTNP-TPSKVTTLTGVTEAVGTFGYSIGFGHSLALRSDGYLVGWGHNTYGQL 728

Query: 205 G 205
           G
Sbjct: 729 G 729



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 39/100 (39%), Positives = 54/100 (54%), Gaps = 2/100 (2%)

Query: 56  PTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEG 115
           PT+V G+ S V +VSA  +HSLAV  +G +W WG NN  QLGR    +  T +    + G
Sbjct: 633 PTQVQGIGSAV-AVSAAKHHSLAVLADGTLWDWGANNYGQLGRNQDNTNPTPSKVTTLTG 691

Query: 116 LDQVNVCAAFASGVVSS-AIGDDGSLWVWGKSKRGQLGLG 154
           + +      ++ G   S A+  DG L  WG +  GQLG G
Sbjct: 692 VTEAVGTFGYSIGFGHSLALRSDGYLVGWGHNTYGQLGTG 731



 Score = 40.4 bits (93), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 35/119 (29%), Positives = 56/119 (47%), Gaps = 14/119 (11%)

Query: 257 EPFLVEGVE-VVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDIN--FH 313
           +P  V+G+  V  +A G  HSL L  +G + + G+N +GQLG         P  +     
Sbjct: 136 DPVQVQGLSGVTTVALGATHSLALCYDGSVWAWGANDHGQLGDGTSIARRTPQMVAGLQE 195

Query: 314 PVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQL--GRMGPDNVPLVVEGLEG 370
            V++++G  HSLA+    +         + +WG N   QL  G      VP+ ++GL G
Sbjct: 196 VVAVAAGANHSLAVLSDGT---------VWAWGENYDGQLGDGTTVTRRVPVPIQGLSG 245


>gi|310825568|ref|YP_003957926.1| bnr repeat domain-containing protein [Stigmatella aurantiaca
           DW4/3-1]
 gi|309398640|gb|ADO76099.1| BNR repeat domain protein [Stigmatella aurantiaca DW4/3-1]
          Length = 482

 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 88/261 (33%), Positives = 129/261 (49%), Gaps = 17/261 (6%)

Query: 56  PTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEG 115
           P +VPGL   V +V+ G+ HSLA+  +G VWAWG N+  QLG G      T   P  V G
Sbjct: 216 PVQVPGL-QGVVAVAGGYMHSLALCADGTVWAWGFNDYGQLGNGTTVHSPT---PVPVPG 271

Query: 116 LDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIV 175
           L QV   AA   G  S A+  DG++W WG +  GQLG     T+   P RVE L   ++V
Sbjct: 272 LSQVVSVAA--GGFHSLALCADGTVWAWGNNGFGQLGEAVS-TQRTKPGRVEGL--REVV 326

Query: 176 KVSFGWGHALAQTEDGKLFGWGYSADGRIGN--LGKALESSPLDSNIDRSSESDQEISSS 233
            V+ G+ H+LA    G L+ WG +  G++GN     +   +P+      +S +   + S 
Sbjct: 327 AVAGGFYHSLAVRAGGSLWSWGNNYSGQLGNGSFSSSARPAPVQGLGAVTSVAAGGMHSV 386

Query: 234 TIEKAQKLVSEGMEKEKYM-----PIIWEPFLVEGVE-VVDIACGFDHSLVLGRNGVLLS 287
            ++    + + G  +E  +     P    P  V G++  V +A GF HSL +   G L +
Sbjct: 387 AVQADGTVWAWGRNEEGQLGHERAPERATPVRVPGLQGEVAVAAGFYHSLSVQAGGSLWA 446

Query: 288 CGSNVYGQLGREKQDMGMFPV 308
            G N +GQLG  +  +   P 
Sbjct: 447 WGLNDFGQLGDSEAPLMPVPA 467



 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 109/321 (33%), Positives = 145/321 (45%), Gaps = 66/321 (20%)

Query: 56  PTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEG 115
           P  VPGL S   +V+AG  H+LA+  +G VWAWG N   QLG G+   RAT   P +V G
Sbjct: 166 PRPVPGL-SRAVAVAAGGSHALALCADGTVWAWGNNGYGQLGNGSTAHRAT---PVQVPG 221

Query: 116 LDQVNVCAAFASGVVSS-AIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKI 174
           L  V    A A G + S A+  DG++W WG +  GQLG G  +     P+ V      ++
Sbjct: 222 LQGV---VAVAGGYMHSLALCADGTVWAWGFNDYGQLGNGTTVHS---PTPVPVPGLSQV 275

Query: 175 VKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSST 234
           V V+ G  H+LA   DG ++ WG   +   G LG+A+ +                     
Sbjct: 276 VSVAAGGFHSLALCADGTVWAWG---NNGFGQLGEAVST--------------------- 311

Query: 235 IEKAQKLVSEGMEKEKYMPIIWEPFLVEGV-EVVDIACGFDHSLVLGRNGVLLSCGSNVY 293
                       ++ K       P  VEG+ EVV +A GF HSL +   G L S G+N  
Sbjct: 312 ------------QRTK-------PGRVEGLREVVAVAGGFYHSLAVRAGGSLWSWGNNYS 352

Query: 294 GQLGREKQDMGMFPVDINFHPVSISSGLGHSLAICEVRSSNVTGGARGIV-SWGWNRSSQ 352
           GQLG      G F       PV    GLG   ++      +V   A G V +WG N   Q
Sbjct: 353 GQLGN-----GSFSSSARPAPV---QGLGAVTSVAAGGMHSVAVQADGTVWAWGRNEEGQ 404

Query: 353 LG--RMGPDNVPLVVEGLEGE 371
           LG  R      P+ V GL+GE
Sbjct: 405 LGHERAPERATPVRVPGLQGE 425



 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 64/161 (39%), Positives = 90/161 (55%), Gaps = 9/161 (5%)

Query: 55  EPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVE 114
           +P RV GL  +V +V+ G YHSLAV   G++W+WG N   QLG G+  S A    P  V+
Sbjct: 315 KPGRVEGL-REVVAVAGGFYHSLAVRAGGSLWSWGNNYSGQLGNGSFSSSA---RPAPVQ 370

Query: 115 GLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKI 174
           GL  V   A  A G+ S A+  DG++W WG+++ GQLG  +   E   P RV  L GE  
Sbjct: 371 GLGAVTSVA--AGGMHSVAVQADGTVWAWGRNEEGQLGH-ERAPERATPVRVPGLQGE-- 425

Query: 175 VKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSP 215
           V V+ G+ H+L+    G L+ WG +  G++G+    L   P
Sbjct: 426 VAVAAGFYHSLSVQAGGSLWAWGLNDFGQLGDSEAPLMPVP 466



 Score = 69.7 bits (169), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 62/156 (39%), Positives = 79/156 (50%), Gaps = 17/156 (10%)

Query: 25  SGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGA 84
           +G ++ S+G+   G LG      G    +  P  V GL   VTSV+AG  HS+AV  +G 
Sbjct: 340 AGGSLWSWGNNYSGQLG-----NGSFSSSARPAPVQGL-GAVTSVAAGGMHSVAVQADGT 393

Query: 85  VWAWGRNNEVQLGRGALESRATWNDPKRVEGLD-QVNVCAAFASGVVSSAIGDDGSLWVW 143
           VWAWGRN E QLG      RAT   P RV GL  +V V A F     S ++   GSLW W
Sbjct: 394 VWAWGRNEEGQLGHERAPERAT---PVRVPGLQGEVAVAAGFYH---SLSVQAGGSLWAW 447

Query: 144 GKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSF 179
           G +  GQLG   D    ++P      A  K  +V+F
Sbjct: 448 GLNDFGQLG---DSEAPLMPVPAPGWAQGK-ARVAF 479



 Score = 65.5 bits (158), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 87/304 (28%), Positives = 123/304 (40%), Gaps = 66/304 (21%)

Query: 55  EPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVE 114
            P +  GL   + +++A   H +A+  +G  W      E   G  A + RAT       +
Sbjct: 65  SPVQALGL-GGMAALAACCVHGMALRASGGGWTLRGLGEGAGGGEASKHRAT-----PAQ 118

Query: 115 GLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKI 174
             DQ  V A       S A+  DG++W  G +  GQLG G     +  P  V  L   + 
Sbjct: 119 AADQRGVRAVAGGYQYSLALHADGTVWACGSNSAGQLGNGTTAARS-APRPVPGL--SRA 175

Query: 175 VKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSST 234
           V V+ G  HALA   DG ++ WG +  G++GN                          ST
Sbjct: 176 VAVAAGGSHALALCADGTVWAWGNNGYGQLGN-------------------------GST 210

Query: 235 IEKAQKLVSEGMEKEKYMPIIWEPFLVEGVE-VVDIACGFDHSLVLGRNGVLLSCGSNVY 293
             +A                   P  V G++ VV +A G+ HSL L  +G + + G N Y
Sbjct: 211 AHRA------------------TPVQVPGLQGVVAVAGGYMHSLALCADGTVWAWGFNDY 252

Query: 294 GQLGREKQDMGMFPVDIN--FHPVSISSGLGHSLAICEVRSSNVTGGARGIV-SWGWNRS 350
           GQLG         PV +      VS+++G  HSLA+C          A G V +WG N  
Sbjct: 253 GQLGNGTTVHSPTPVPVPGLSQVVSVAAGGFHSLALC----------ADGTVWAWGNNGF 302

Query: 351 SQLG 354
            QLG
Sbjct: 303 GQLG 306



 Score = 43.1 bits (100), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 37/110 (33%), Positives = 52/110 (47%), Gaps = 15/110 (13%)

Query: 266 VVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGR--EKQDMGMFPVDINFHPVSISSGLGH 323
           V  +A G+ +SL L  +G + +CGSN  GQLG           PV      V++++G  H
Sbjct: 125 VRAVAGGYQYSLALHADGTVWACGSNSAGQLGNGTTAARSAPRPVPGLSRAVAVAAGGSH 184

Query: 324 SLAICEVRSSNVTGGARGIV-SWGWNRSSQLGR--MGPDNVPLVVEGLEG 370
           +LA+C          A G V +WG N   QLG         P+ V GL+G
Sbjct: 185 ALALC----------ADGTVWAWGNNGYGQLGNGSTAHRATPVQVPGLQG 224


>gi|355694504|gb|AER99691.1| hect domain and RLD 6 [Mustela putorius furo]
          Length = 1014

 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 78/252 (30%), Positives = 132/252 (52%), Gaps = 22/252 (8%)

Query: 64  SDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCA 123
           +++   ++G  HSL + +NG + ++G N+  QLGR  ++ +     PKR+  L+ + V  
Sbjct: 23  AELRQAASGERHSLLLLSNGELHSYGDNSHGQLGRRDVQRQ---EQPKRIPALETLRVDL 79

Query: 124 AFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGH 183
                  S A+   G ++ WG    GQLG+G+     ++P +++ L   KI++VS G  H
Sbjct: 80  VSCGKEHSLAVCYKGRVFAWGAGSEGQLGIGEFNEINLIPRKIKTLTDIKIIQVSCGHHH 139

Query: 184 ALAQTEDGKLFGWGYSADGRIGNLGKAL--ESSPLDSNIDRSSESDQEISSSTIEKAQKL 241
           +LA +EDG+LF WG ++ G++G LGK    ++SP            Q  +      A  L
Sbjct: 140 SLALSEDGRLFTWGSNSHGQLG-LGKECPSQASPQRVQFLDGIPLTQVAAGGAHSFALSL 198

Query: 242 V---------SEGM--EKEKYMPIIW--EPFLVEGVE---VVDIACGFDHSLVLGRNGVL 285
                     SEG    ++K +P++   +P  V+ +E   VV I+CG++H+ VL + G +
Sbjct: 199 SGASFGWGSNSEGQLALRKKNVPVVQSSKPCSVDALENLGVVYISCGYEHTAVLTQTGKV 258

Query: 286 LSCGSNVYGQLG 297
            + G N YGQLG
Sbjct: 259 FTFGGNSYGQLG 270



 Score = 65.5 bits (158), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 61/233 (26%), Positives = 105/233 (45%), Gaps = 55/233 (23%)

Query: 137 DGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGW 196
           +G L  +G +  GQLG  +D+     P R+ AL   ++  VS G  H+LA    G++F W
Sbjct: 41  NGELHSYGDNSHGQLG-RRDVQRQEQPKRIPALETLRVDLVSCGKEHSLAVCYKGRVFAW 99

Query: 197 GYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIW 256
           G  ++G++G +G+  E + +   I   ++                               
Sbjct: 100 GAGSEGQLG-IGEFNEINLIPRKIKTLTD------------------------------- 127

Query: 257 EPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMF-PVDINFH-- 313
                  ++++ ++CG  HSL L  +G L + GSN +GQLG  K+      P  + F   
Sbjct: 128 -------IKIIQVSCGHHHSLALSEDGRLFTWGSNSHGQLGLGKECPSQASPQRVQFLDG 180

Query: 314 -PVS-ISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPDNVPLV 364
            P++ +++G  HS A+      +++G + G   WG N   QL  +   NVP+V
Sbjct: 181 IPLTQVAAGGAHSFAL------SLSGASFG---WGSNSEGQLA-LRKKNVPVV 223



 Score = 39.3 bits (90), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 33/97 (34%), Positives = 43/97 (44%), Gaps = 15/97 (15%)

Query: 263 GVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGR----EKQDMGMFPVDINFHPVSIS 318
           G E+   A G  HSL+L  NG L S G N +GQLGR     ++     P         +S
Sbjct: 22  GAELRQAASGERHSLLLLSNGELHSYGDNSHGQLGRRDVQRQEQPKRIPALETLRVDLVS 81

Query: 319 SGLGHSLAICEVRSSNVTGGARG-IVSWGWNRSSQLG 354
            G  HSLA+C           +G + +WG     QLG
Sbjct: 82  CGKEHSLAVC----------YKGRVFAWGAGSEGQLG 108


>gi|218779101|ref|YP_002430419.1| chromosome condensation regulator RCC1 [Desulfatibacillum
           alkenivorans AK-01]
 gi|218760485|gb|ACL02951.1| regulator of chromosome condensation RCC1 [Desulfatibacillum
           alkenivorans AK-01]
          Length = 671

 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 100/312 (32%), Positives = 148/312 (47%), Gaps = 70/312 (22%)

Query: 23  SASGTAVVSFGDGSQGALGLPTSLT------------GVGG--DAYEPTRVPGLPSDVTS 68
           S  G AV     G+Q +LGL T  T            G+G   D   P +V  L S+  +
Sbjct: 123 SGCGNAVPMLAAGTQFSLGLKTDGTVWSWGCNTYATLGLGDRVDRNTPQKVEAL-SNAVA 181

Query: 69  VSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASG 128
           ++AG  H+LA+T +G+VW+WG N   QLG G++      + PK+VE +   NV A  A  
Sbjct: 182 LAAGDDHTLALTRDGSVWSWGWNYNGQLGLGSIHEDTYESTPKKVEAI--SNVTAIAAQT 239

Query: 129 VVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQT 188
             + A+  DG++W WG +  GQLG+G D  +   P +VEAL+   +V ++ G  H+LA T
Sbjct: 240 YHTQALTRDGNVWSWGSNDFGQLGMG-DQNDRDAPQKVEALS--NVVAINAGGNHSLAVT 296

Query: 189 EDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEK 248
            DG+++ WG +++G++G LG            DR +                        
Sbjct: 297 RDGQVWAWGENSEGQLG-LGDLW---------DRDA------------------------ 322

Query: 249 EKYMPIIWEPFLVEGV-EVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGR-EKQDMGMF 306
                    P  VE +  VV I  G DH+L L R+G + + G N  GQ+G  E Q +   
Sbjct: 323 ---------PQKVEALSNVVAINAGGDHTLALTRDGSVWAWGKNGRGQIGTGEGQSLYNE 373

Query: 307 PV-----DINFH 313
           PV     D NF+
Sbjct: 374 PVHVIYSDENFY 385



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 107/388 (27%), Positives = 161/388 (41%), Gaps = 99/388 (25%)

Query: 21  MRSASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVT 80
           M    G A+ ++G    G LG+     G  GD   P ++  L S+V S++ G  HSLAV+
Sbjct: 1   MAVTQGGALWTWGGNDDGRLGI-----GATGDQNLPVQLSYL-SNVVSLAGGEKHSLAVS 54

Query: 81  NNGAVWAWGRNNEVQL--------------------------------GRGALESRATWN 108
            +G+VW+WG N+  QL                                G G +     ++
Sbjct: 55  GDGSVWSWGSNSAGQLGVESLTPASVLAPVHALYSGDDFHLFYDTDGDGTGDICDDCPYD 114

Query: 109 DPKRVEGLDQV-NVCAAFASGV-VSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRV 166
             K   GL    N     A+G   S  +  DG++W WG +    LGLG D  +   P +V
Sbjct: 115 PFKTAPGLSGCGNAVPMLAAGTQFSLGLKTDGTVWSWGCNTYATLGLG-DRVDRNTPQKV 173

Query: 167 EALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSES 226
           EAL+    V ++ G  H LA T DG ++ WG++ +G++G LG   E              
Sbjct: 174 EALS--NAVALAAGDDHTLALTRDGSVWSWGWNYNGQLG-LGSIHE-------------- 216

Query: 227 DQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLL 286
             +   ST +K + + +                      V  IA    H+  L R+G + 
Sbjct: 217 --DTYESTPKKVEAISN----------------------VTAIAAQTYHTQALTRDGNVW 252

Query: 287 SCGSNVYGQLGREKQDMGMFP--VDINFHPVSISSGLGHSLAICEVRSSNVTGGARGIVS 344
           S GSN +GQLG   Q+    P  V+   + V+I++G  HSLA+   R   V         
Sbjct: 253 SWGSNDFGQLGMGDQNDRDAPQKVEALSNVVAINAGGNHSLAV--TRDGQV--------- 301

Query: 345 WGWNRSSQ----LGRMGPDNVPLVVEGL 368
           W W  +S+    LG +   + P  VE L
Sbjct: 302 WAWGENSEGQLGLGDLWDRDAPQKVEAL 329


>gi|146295357|ref|YP_001179128.1| regulator of chromosome condensation, RCC1 [Caldicellulosiruptor
           saccharolyticus DSM 8903]
 gi|145408933|gb|ABP65937.1| regulator of chromosome condensation, RCC1 [Caldicellulosiruptor
           saccharolyticus DSM 8903]
          Length = 307

 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 97/298 (32%), Positives = 150/298 (50%), Gaps = 30/298 (10%)

Query: 69  VSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASG 128
           VSAG  H+LA+  +G VWAWGRN   QLG G  ES+     P +V+GL  V + AA A G
Sbjct: 2   VSAGKDHNLALRRDGTVWAWGRNEGGQLGDGTRESKLV---PVQVKGLKDVVMVAA-AEG 57

Query: 129 VVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQT 188
             S A+  DG++WVWG +  G LGL + +T   VP +VE L   +IV ++       A  
Sbjct: 58  -HSLALKRDGTIWVWGFNSDGVLGLNEIVTHCEVPLKVEGLG--EIVSIATNRYLVFALR 114

Query: 189 EDGKLFGWGYSADGRIG---NLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEG 245
           +DG++  WG      +    +L    +   +D   D  + +  E  +  + +  ++++ G
Sbjct: 115 KDGRIVAWGERRYKHLCGDIDLWDKRKFIIIDKLEDIVAIALGENHAVALRQDGRVLTWG 174

Query: 246 M-------EKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGR 298
           +       E ++  P++ E  L+E V +  IA G+ H+LV+  +G + + G N  GQLG 
Sbjct: 175 VFEYDLWRENKRIFPVLIERELLEDVRM--IAAGYKHALVVKGDGSVWAWGMNRRGQLGD 232

Query: 299 EKQDMGMFPVDINFHP--VSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLG 354
                 +FPV +      VSIS G  H++A+ E  S         I  WG+N   Q+G
Sbjct: 233 GTVVSKVFPVRVRGIEGVVSISGGGWHTVAVKEDGS---------IWGWGFNYFGQVG 281



 Score = 72.0 bits (175), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 71/255 (27%), Positives = 130/255 (50%), Gaps = 33/255 (12%)

Query: 133 AIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGK 192
           A+  DG++W WG+++ GQLG G   ++ +VP +V+ L  + +V V+   GH+LA   DG 
Sbjct: 11  ALRRDGTVWAWGRNEGGQLGDGTRESK-LVPVQVKGL--KDVVMVAAAEGHSLALKRDGT 67

Query: 193 LFGWGYSADGRIGNLGKALESSPLDSNIDRSSE----SDQEISSSTIEKAQKLVSEGMEK 248
           ++ WG+++DG +G L + +    +   ++   E    +        + K  ++V+ G  +
Sbjct: 68  IWVWGFNSDGVLG-LNEIVTHCEVPLKVEGLGEIVSIATNRYLVFALRKDGRIVAWGERR 126

Query: 249 EKYMP---IIWEP---FLVEGVE-VVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQ 301
            K++     +W+     +++ +E +V IA G +H++ L ++G +L+ G   Y  L RE +
Sbjct: 127 YKHLCGDIDLWDKRKFIIIDKLEDIVAIALGENHAVALRQDGRVLTWGVFEY-DLWRENK 185

Query: 302 DMGMFPVDINFHPVS----ISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQL--GR 355
              +FPV I    +     I++G  H+L         V  G   + +WG NR  QL  G 
Sbjct: 186 R--IFPVLIERELLEDVRMIAAGYKHAL---------VVKGDGSVWAWGMNRRGQLGDGT 234

Query: 356 MGPDNVPLVVEGLEG 370
           +     P+ V G+EG
Sbjct: 235 VVSKVFPVRVRGIEG 249



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 46/151 (30%), Positives = 77/151 (50%), Gaps = 25/151 (16%)

Query: 64  SDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRV-------EGL 116
            D+ +++ G  H++A+  +G V  WG           +     W + KR+       E L
Sbjct: 149 EDIVAIALGENHAVALRQDGRVLTWG-----------VFEYDLWRENKRIFPVLIERELL 197

Query: 117 DQVNVCAA-FASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIV 175
           + V + AA +   +V      DGS+W WG ++RGQLG G  +   + P RV  + G  +V
Sbjct: 198 EDVRMIAAGYKHALVVKG---DGSVWAWGMNRRGQLGDGT-VVSKVFPVRVRGIEG--VV 251

Query: 176 KVSFGWGHALAQTEDGKLFGWGYSADGRIGN 206
            +S G  H +A  EDG ++GWG++  G++G+
Sbjct: 252 SISGGGWHTVAVKEDGSIWGWGFNYFGQVGS 282



 Score = 62.0 bits (149), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 36/91 (39%), Positives = 53/91 (58%), Gaps = 5/91 (5%)

Query: 62  LPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNV 121
           L  DV  ++AG+ H+L V  +G+VWAWG N   QLG G + S+     P RV G++   V
Sbjct: 196 LLEDVRMIAAGYKHALVVKGDGSVWAWGMNRRGQLGDGTVVSKVF---PVRVRGIE--GV 250

Query: 122 CAAFASGVVSSAIGDDGSLWVWGKSKRGQLG 152
            +    G  + A+ +DGS+W WG +  GQ+G
Sbjct: 251 VSISGGGWHTVAVKEDGSIWGWGFNYFGQVG 281



 Score = 40.8 bits (94), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 34/105 (32%), Positives = 51/105 (48%), Gaps = 14/105 (13%)

Query: 269 IACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDIN--FHPVSISSGLGHSLA 326
           ++ G DH+L L R+G + + G N  GQLG   ++  + PV +      V +++  GHSLA
Sbjct: 2   VSAGKDHNLALRRDGTVWAWGRNEGGQLGDGTRESKLVPVQVKGLKDVVMVAAAEGHSLA 61

Query: 327 ICEVRSSNVTGGARGIVSWGWNRSSQLGR---MGPDNVPLVVEGL 368
           +    +         I  WG+N    LG    +    VPL VEGL
Sbjct: 62  LKRDGT---------IWVWGFNSDGVLGLNEIVTHCEVPLKVEGL 97


>gi|21537357|gb|AAM61698.1| UVB-resistance protein-like [Arabidopsis thaliana]
          Length = 396

 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 66/189 (34%), Positives = 104/189 (55%), Gaps = 11/189 (5%)

Query: 56  PTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEG 115
           P RV GL  +V  ++ G +H+LA+  +G +WAWG N   QLG G  + R+    P  V+G
Sbjct: 189 PVRVQGL-ENVRLIAVGAFHNLALKEDGTLWAWGNNEYGQLGTGDTQPRSY---PIPVQG 244

Query: 116 LDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLG-KDITEAIVPSRVEALAGEKI 174
           LD + +    A G  S+A+ ++G ++ WG+ + G+LG G  D +  ++P +V  L GE I
Sbjct: 245 LDDLTLVDIAAGGWHSTALTNEGEVYGWGRGEHGRLGFGDNDKSSKMLPQKVNLLPGEDI 304

Query: 175 VKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNID------RSSESDQ 228
           ++VS G  H++A T DG++F +G    GR+G   K     PL+  I       R + +D+
Sbjct: 305 IQVSCGGTHSVALTRDGRIFSFGRGDHGRLGYGRKVTTGQPLELPIHIPPPEGRFNHTDE 364

Query: 229 EISSSTIEK 237
           E     I K
Sbjct: 365 EDDGKWIAK 373



 Score = 87.8 bits (216), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 83/276 (30%), Positives = 125/276 (45%), Gaps = 24/276 (8%)

Query: 84  AVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVW 143
           +V AWG   + QLG G  E +        V+ L+  NV +       S AI DDG L+ W
Sbjct: 6   SVIAWGSGEDGQLGLGTDEEKEL---ASVVDALEPFNVRSVVGGSRNSLAICDDGKLFTW 62

Query: 144 GKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGR 203
           G ++RG LG   +      PS V++LA  KIV+ + G  H LA  + G+ + WG +  G+
Sbjct: 63  GWNQRGTLGHPPETKTESTPSLVKSLANVKIVQAAIGAWHCLAVDDQGRAYAWGGNEYGQ 122

Query: 204 IGNLGKALES-SPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKY----------- 251
            G      E+  P+  +I       Q+++   +  A    S  + +E Y           
Sbjct: 123 CGEEPSKDETGRPVRRDIVIPKRCAQQLTVRQV-AAGGTHSVVLTREGYVWTWGQPWPPG 181

Query: 252 -MPIIWEPFLVEGVEVVD-IACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVD 309
            +  I  P  V+G+E V  IA G  H+L L  +G L + G+N YGQLG        +P+ 
Sbjct: 182 DIKQISVPVRVQGLENVRLIAVGAFHNLALKEDGTLWAWGNNEYGQLGTGDTQPRSYPIP 241

Query: 310 I----NFHPVSISSGLGHSLAICEVRSSNVTGGARG 341
           +    +   V I++G  HS A+       V G  RG
Sbjct: 242 VQGLDDLTLVDIAAGGWHSTAL--TNEGEVYGWGRG 275



 Score = 69.3 bits (168), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 86/332 (25%), Positives = 141/332 (42%), Gaps = 44/332 (13%)

Query: 24  ASGTAVVSFGDGSQGALGLPTS----LTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAV 79
           AS T+V+++G G  G LGL T     L  V  DA EP        +V SV  G  +SLA+
Sbjct: 2   ASATSVIAWGSGEDGQLGLGTDEEKELASVV-DALEPF-------NVRSVVGGSRNSLAI 53

Query: 80  TNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGS 139
            ++G ++ WG N    LG        T + P  V+ L  V +  A        A+ D G 
Sbjct: 54  CDDGKLFTWGWNQRGTLGHPP--ETKTESTPSLVKSLANVKIVQAAIGAWHCLAVDDQGR 111

Query: 140 LWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEK------IVKVSFGWGHALAQTEDGKL 193
            + WG ++ GQ G      E   P R + +  ++      + +V+ G  H++  T +G +
Sbjct: 112 AYAWGGNEYGQCGEEPSKDETGRPVRRDIVIPKRCAQQLTVRQVAAGGTHSVVLTREGYV 171

Query: 194 FGWGYS-ADGRIGNLGKALESSPLD--------SNIDRSSESDQEISSSTIEKAQKLVSE 244
           + WG     G I  +   +    L+        +  + + + D  + +    +  +L + 
Sbjct: 172 WTWGQPWPPGDIKQISVPVRVQGLENVRLIAVGAFHNLALKEDGTLWAWGNNEYGQLGTG 231

Query: 245 GMEKEKYMPIIWEPFLVEGVE---VVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQ 301
             +   Y      P  V+G++   +VDIA G  HS  L   G +   G   +G+LG    
Sbjct: 232 DTQPRSY------PIPVQGLDDLTLVDIAAGGWHSTALTNEGEVYGWGRGEHGRLGFGDN 285

Query: 302 DMG--MFPVDINFHP----VSISSGLGHSLAI 327
           D    M P  +N  P    + +S G  HS+A+
Sbjct: 286 DKSSKMLPQKVNLLPGEDIIQVSCGGTHSVAL 317


>gi|417407323|gb|JAA50277.1| Putative rcc1 and btb domain-containing protein 2, partial
           [Desmodus rotundus]
          Length = 511

 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 64/176 (36%), Positives = 97/176 (55%), Gaps = 5/176 (2%)

Query: 66  VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAF 125
           V  V+ G YHSL +T++G V+AWG NN  Q+G G   S A    P+RV G  Q  V    
Sbjct: 140 VIEVACGSYHSLVLTSDGEVFAWGCNNSGQVGSG---STANQPIPRRVTGCLQNRVVVNI 196

Query: 126 ASG-VVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHA 184
           A G + S A+ D G ++VWG +  GQLGLG     +  P R+ AL G ++ +V+ G+ H 
Sbjct: 197 ACGQMCSMAVVDSGEVYVWGYNGNGQLGLGSSGNHS-TPCRIAALQGIRVQRVACGYAHT 255

Query: 185 LAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQK 240
           L  T+DG+++ WG ++ G++G   K+ +S P    +++    +     ST   A K
Sbjct: 256 LVLTDDGQVYAWGANSYGQLGTGNKSNQSYPTPVVVEKDRIIEIAACHSTHTSAAK 311



 Score = 78.2 bits (191), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 70/289 (24%), Positives = 127/289 (43%), Gaps = 25/289 (8%)

Query: 77  LAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNV-CAAFASGVVSSAIG 135
           L +T N  ++  G N    LG G ++S     +P+R++ L    + C ++ SG       
Sbjct: 45  LYMTVNDEIFVLGTNCCGCLGLGDIQSTI---EPRRLDSLSGKKIACLSYGSGPHIVLAT 101

Query: 136 DDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEA-LAGEKIVKVSFGWGHALAQTEDGKLF 194
            +G ++ WG +   QLG G       VP  +   L+ +++++V+ G  H+L  T DG++F
Sbjct: 102 TEGEVFTWGHNAYNQLGNGT-TNHGSVPCHISTNLSNKQVIEVACGSYHSLVLTSDGEVF 160

Query: 195 GWGYSADGRIGNLGKALESSP------LDSNIDRSSESDQEISSSTIEKAQKLV------ 242
            WG +  G++G+   A +  P      L + +  +    Q  S + ++  +  V      
Sbjct: 161 AWGCNNSGQVGSGSTANQPIPRRVTGCLQNRVVVNIACGQMCSMAVVDSGEVYVWGYNGN 220

Query: 243 -SEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQ 301
              G+              ++G+ V  +ACG+ H+LVL  +G + + G+N YGQLG   +
Sbjct: 221 GQLGLGSSGNHSTPCRIAALQGIRVQRVACGYAHTLVLTDDGQVYAWGANSYGQLGTGNK 280

Query: 302 DMGMFPVDINFHPVSISSGLGHSLAICEVRSSNVTGGARG-IVSWGWNR 349
               +P      PV +       +A C    ++      G +  WG  R
Sbjct: 281 SNQSYPT-----PVVVEKDRIIEIAACHSTHTSAAKTQGGHVYMWGQCR 324



 Score = 65.5 bits (158), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 67/250 (26%), Positives = 111/250 (44%), Gaps = 59/250 (23%)

Query: 129 VVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWG-HALAQ 187
           V+   + D+  ++V G +  G LGLG DI   I P R+++L+G+KI  +S+G G H +  
Sbjct: 44  VLYMTVNDE--IFVLGTNCCGCLGLG-DIQSTIEPRRLDSLSGKKIACLSYGSGPHIVLA 100

Query: 188 TEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGME 247
           T +G++F WG++A  ++GN      S P   + + S++                      
Sbjct: 101 TTEGEVFTWGHNAYNQLGNGTTNHGSVPCHISTNLSNK---------------------- 138

Query: 248 KEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFP 307
                            +V+++ACG  HSLVL  +G + + G N  GQ+G         P
Sbjct: 139 -----------------QVIEVACGSYHSLVLTSDGEVFAWGCNNSGQVGSGSTANQPIP 181

Query: 308 VDI-----NFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQ--LGRMGPDN 360
             +     N   V+I+ G   S+A+       V  G   +  WG+N + Q  LG  G  +
Sbjct: 182 RRVTGCLQNRVVVNIACGQMCSMAV-------VDSGE--VYVWGYNGNGQLGLGSSGNHS 232

Query: 361 VPLVVEGLEG 370
            P  +  L+G
Sbjct: 233 TPCRIAALQG 242


>gi|351705119|gb|EHB08038.1| RCC1 and BTB domain-containing protein 2 [Heterocephalus glaber]
          Length = 527

 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 59/151 (39%), Positives = 91/151 (60%), Gaps = 5/151 (3%)

Query: 66  VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAF 125
           V  V+ G YHSL +T++G V+AWG NN  Q+G G+  ++A    P+RV G  Q  V    
Sbjct: 130 VIEVACGSYHSLVLTSDGEVYAWGYNNSGQVGSGSTANQAI---PRRVTGCLQNKVVVNI 186

Query: 126 ASG-VVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHA 184
           A G + S A+ D G ++VWG +  GQLGLG    +   P RV AL G ++ +V+ G+ H 
Sbjct: 187 ACGQMCSVAVVDTGEVYVWGYNGNGQLGLGSSGNQP-TPCRVAALQGIRVQRVACGFAHT 245

Query: 185 LAQTEDGKLFGWGYSADGRIGNLGKALESSP 215
           L  T++G+++ WG ++ G++G   K+ +S P
Sbjct: 246 LVLTDEGQVYAWGANSYGQLGTGNKSNQSYP 276



 Score = 88.6 bits (218), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 74/289 (25%), Positives = 131/289 (45%), Gaps = 25/289 (8%)

Query: 77  LAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGL-DQVNVCAAFASGVVSSAIG 135
           L  T N  ++  G N    LG G ++S     +P+R++ L D+   C ++ SG       
Sbjct: 35  LYTTINDEIFVLGTNCSGCLGLGDVQSTL---EPRRLDSLSDKKIACLSYGSGPHIILAT 91

Query: 136 DDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEA-LAGEKIVKVSFGWGHALAQTEDGKLF 194
            +G ++ WG +   QLG G      +VP +V   L+ +++++V+ G  H+L  T DG+++
Sbjct: 92  TEGEVFTWGHNGYTQLGNGT-TNHGLVPCQVSTNLSNKQVIEVACGSYHSLVLTSDGEVY 150

Query: 195 GWGYSADGRIGNLGKALESSP------LDSNIDRSSESDQEISSSTIEKAQKLV------ 242
            WGY+  G++G+   A ++ P      L + +  +    Q  S + ++  +  V      
Sbjct: 151 AWGYNNSGQVGSGSTANQAIPRRVTGCLQNKVVVNIACGQMCSVAVVDTGEVYVWGYNGN 210

Query: 243 -SEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQ 301
              G+      P       ++G+ V  +ACGF H+LVL   G + + G+N YGQLG   +
Sbjct: 211 GQLGLGSSGNQPTPCRVAALQGIRVQRVACGFAHTLVLTDEGQVYAWGANSYGQLGTGNK 270

Query: 302 DMGMFPVDINFHPVSISSGLGHSLAICEVRSSNVTGGARG-IVSWGWNR 349
               +P      PV +       +A C    ++      G +  WG  R
Sbjct: 271 SNQSYPT-----PVVVEKDRIIEIAACHSTHTSAAKTQGGHVYMWGQCR 314



 Score = 58.5 bits (140), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 64/250 (25%), Positives = 109/250 (43%), Gaps = 59/250 (23%)

Query: 129 VVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWG-HALAQ 187
           V+ + I D+  ++V G +  G LGLG D+   + P R+++L+ +KI  +S+G G H +  
Sbjct: 34  VLYTTINDE--IFVLGTNCSGCLGLG-DVQSTLEPRRLDSLSDKKIACLSYGSGPHIILA 90

Query: 188 TEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGME 247
           T +G++F WG++   ++GN        P   + + S++                      
Sbjct: 91  TTEGEVFTWGHNGYTQLGNGTTNHGLVPCQVSTNLSNK---------------------- 128

Query: 248 KEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFP 307
                            +V+++ACG  HSLVL  +G + + G N  GQ+G         P
Sbjct: 129 -----------------QVIEVACGSYHSLVLTSDGEVYAWGYNNSGQVGSGSTANQAIP 171

Query: 308 VDI-----NFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQ--LGRMGPDN 360
             +     N   V+I+ G   S+A+ +      TG    +  WG+N + Q  LG  G   
Sbjct: 172 RRVTGCLQNKVVVNIACGQMCSVAVVD------TGE---VYVWGYNGNGQLGLGSSGNQP 222

Query: 361 VPLVVEGLEG 370
            P  V  L+G
Sbjct: 223 TPCRVAALQG 232


>gi|408500851|ref|YP_006864770.1| RCC1 repeat-containing protein [Bifidobacterium asteroides PRL2011]
 gi|408465675|gb|AFU71204.1| RCC1 repeat-containing protein [Bifidobacterium asteroides PRL2011]
          Length = 1070

 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 103/356 (28%), Positives = 152/356 (42%), Gaps = 81/356 (22%)

Query: 29  VVSFGDGSQGALGLPTSLT-GVGGDAYEPTRVPGLPSDVT--SVSAGHYHSLAVTNNGAV 85
             ++GD + G LG  T+ +        +PT   G+P+D T   VSAG +HSLA+ ++G V
Sbjct: 581 AYAWGDNTYGQLGDATTNSRSTPNIVRKPT---GVPTDFTYVQVSAGKWHSLALGSDGYV 637

Query: 86  WAWGRNNEVQLGRGA---------LESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGD 136
           +AWG N   QLG            +   A   DP +  GL  + V A     +   A+  
Sbjct: 638 YAWGSNQHGQLGNNTKTNSSVPVRVRDPANPTDPNK--GLKAIQVSAGDEHSL---ALDS 692

Query: 137 DGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALA-------GEKIVKVSFGWGHALAQTE 189
           +G ++ WG +  G+LG     T++ VP RV   A       G K V+VS GW H+LA   
Sbjct: 693 NGYVYAWGWNDNGRLG-NNSTTDSSVPVRVRDPASPTDPSKGLKAVQVSAGWHHSLAVGS 751

Query: 190 DGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKE 249
           DG  + WG +  G++GN  K   S P+    D +S +D                      
Sbjct: 752 DGYTYAWGLNNYGQLGNSSKNSSSFPVRVR-DFASPNDAN-------------------- 790

Query: 250 KYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVD 309
                       +G++ V ++ G+ HSL +G +G   + G N YGQLG         PV 
Sbjct: 791 ------------KGLKAVQVSAGYSHSLAVGSDGYTYAWGLNNYGQLGNSNTVDSTVPVR 838

Query: 310 IN-----------FHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLG 354
           +                +I++G  HSLA+         G      +WGWN   QLG
Sbjct: 839 VRDPTSPKDASKGLKATAINAGGEHSLAV---------GNNGYAYAWGWNLYRQLG 885



 Score =  104 bits (260), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 88/299 (29%), Positives = 133/299 (44%), Gaps = 64/299 (21%)

Query: 76  SLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSS-AI 134
           SLAV ++G  +AWG N   QLG     SR+T N  ++  G+         ++G   S A+
Sbjct: 572 SLAVGSDGKAYAWGDNTYGQLGDATTNSRSTPNIVRKPTGVPTDFTYVQVSAGKWHSLAL 631

Query: 135 GDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALA-------GEKIVKVSFGWGHALAQ 187
           G DG ++ WG ++ GQLG     T + VP RV   A       G K ++VS G  H+LA 
Sbjct: 632 GSDGYVYAWGSNQHGQLG-NNTKTNSSVPVRVRDPANPTDPNKGLKAIQVSAGDEHSLAL 690

Query: 188 TEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGME 247
             +G ++ WG++ +GR+GN      S P+    D +S +D                    
Sbjct: 691 DSNGYVYAWGWNDNGRLGNNSTTDSSVPVRVR-DPASPTDPS------------------ 731

Query: 248 KEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFP 307
                         +G++ V ++ G+ HSL +G +G   + G N YGQLG   ++   FP
Sbjct: 732 --------------KGLKAVQVSAGWHHSLAVGSDGYTYAWGLNNYGQLGNSSKNSSSFP 777

Query: 308 VDIN-----------FHPVSISSGLGHSLAICEVRSSNVTGGARGIV-SWGWNRSSQLG 354
           V +               V +S+G  HSLA+          G+ G   +WG N   QLG
Sbjct: 778 VRVRDFASPNDANKGLKAVQVSAGYSHSLAV----------GSDGYTYAWGLNNYGQLG 826



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 86/290 (29%), Positives = 129/290 (44%), Gaps = 65/290 (22%)

Query: 52  DAYEPTRV--PGLPSDVT------SVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALES 103
           D+  P RV  P  P+D +       VSAG +HSLAV ++G  +AWG NN  QLG  +  S
Sbjct: 714 DSSVPVRVRDPASPTDPSKGLKAVQVSAGWHHSLAVGSDGYTYAWGLNNYGQLGNSSKNS 773

Query: 104 R---------ATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLG 154
                     A+ ND  +  GL  V V A ++  +   A+G DG  + WG +  GQLG  
Sbjct: 774 SSFPVRVRDFASPNDANK--GLKAVQVSAGYSHSL---AVGSDGYTYAWGLNNYGQLG-N 827

Query: 155 KDITEAIVPSRV-------EALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNL 207
            +  ++ VP RV       +A  G K   ++ G  H+LA   +G  + WG++   ++G+ 
Sbjct: 828 SNTVDSTVPVRVRDPTSPKDASKGLKATAINAGGEHSLAVGNNGYAYAWGWNLYRQLGDG 887

Query: 208 GKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVV 267
             +  S P+    D +S +D               S+G++  ++                
Sbjct: 888 TTSNSSVPVPVR-DPTSPAD--------------ASKGLQATRF---------------- 916

Query: 268 DIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDI--NFHPV 315
             + G  HSL +G NG   + G N YGQLG    D    PV +  N  PV
Sbjct: 917 --SVGDHHSLAVGSNGYAYAWGENSYGQLGDGTTDDSNVPVSVLFNLQPV 964



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 46/151 (30%), Positives = 65/151 (43%), Gaps = 24/151 (15%)

Query: 52  DAYEPTRV--PGLPSDV------TSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALES 103
           D+  P RV  P  P D       T+++AG  HSLAV NNG  +AWG N   QLG G   +
Sbjct: 832 DSTVPVRVRDPTSPKDASKGLKATAINAGGEHSLAVGNNGYAYAWGWNLYRQLGDGTTSN 891

Query: 104 RATW---NDPKRVEGLDQVNVCAAFASGVVSS-AIGDDGSLWVWGKSKRGQLGLGK---- 155
            +      DP       +      F+ G   S A+G +G  + WG++  GQLG G     
Sbjct: 892 SSVPVPVRDPTSPADASKGLQATRFSVGDHHSLAVGSNGYAYAWGENSYGQLGDGTTDDS 951

Query: 156 --------DITEAIVPSRVEALAGEKIVKVS 178
                   ++   I  +R +   G  +  VS
Sbjct: 952 NVPVSVLFNLQPVITAARFDTSPGTNLASVS 982


>gi|383453805|ref|YP_005367794.1| hypothetical protein COCOR_01791, partial [Corallococcus
           coralloides DSM 2259]
 gi|380728287|gb|AFE04289.1| hypothetical protein COCOR_01791 [Corallococcus coralloides DSM
           2259]
          Length = 827

 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 96/312 (30%), Positives = 143/312 (45%), Gaps = 68/312 (21%)

Query: 56  PTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEG 115
           P  + GL S +T+V+ GH++SLA+  +G VW+WG N   QLG G  + R     P +V G
Sbjct: 571 PEPIFGL-SGITAVAMGHWYSLALREDGTVWSWGYNASGQLGDGTTDERP---RPGQVAG 626

Query: 116 LDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIV 175
           L QV   AA AS  +  A+  DG++W WG +  G LG G   + +  P +V+ L G  ++
Sbjct: 627 LTQVTAIAAGASHAL--ALRADGTVWAWGSNALGTLGDGTQTSRS-TPVQVQGLTG--VI 681

Query: 176 KVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTI 235
            V+ G  H+LA  EDG ++ WG + +G++G++  +   SP                    
Sbjct: 682 AVAAGEYHSLALREDGTVWSWGNNNEGQLGDVTASSRQSP-------------------- 721

Query: 236 EKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQ 295
              Q     G+++                    IA G  H+L     G L++ G N  GQ
Sbjct: 722 --GQVPGLAGVQR--------------------IAAGEKHALAAVEGGPLVAFGKNTSGQ 759

Query: 296 LG----REKQDMGMFPVDINFHPVSISSGLGHSLAICEVRSSNVTGGARGIV-SWGWNRS 350
           LG    +E Q  G      N  P  I++G+ H+LA+           A G V +WG N +
Sbjct: 760 LGLGERKENQSRGEIASLRN--PRGIAAGIAHTLAVA----------ADGTVWAWGANAT 807

Query: 351 SQLGRMGPDNVP 362
            QLG     N P
Sbjct: 808 GQLGNGEAANSP 819



 Score =  105 bits (263), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 106/328 (32%), Positives = 166/328 (50%), Gaps = 40/328 (12%)

Query: 59  VPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQ 118
           VPGL +DV +VSAG+ H+LA+  +G VWAWG N   QLG G   SR+T   P +V GL +
Sbjct: 171 VPGL-TDVRAVSAGNEHALALRTDGTVWAWGSNFAGQLGDGTKTSRST---PVQVVGLTE 226

Query: 119 VNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVS 178
             V A  A+G  S A+  DG++W WG ++ GQLG G  +   + P +V  L   ++  ++
Sbjct: 227 --VIAVSAAGYSSLALRKDGTVWAWGDNESGQLGDGT-MEGRLTPVQVLDLV--RVTGLA 281

Query: 179 FGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKA 238
            G GH+LA   DG +  WG +  G++G+ G +LE +P    + + ++     +S+++  A
Sbjct: 282 AGRGHSLAVLADGTVRAWGANIYGQLGDGGFSLEGNPRPVAVSKLTDVVSVAASTSLSFA 341

Query: 239 ---QKLVSE---------GMEKEKYMPIIWEPFLVEGV-EVVDIACGFDHSLVLGRNGVL 285
                 VS          G+E+     +   P  V G+ +V  ++ G  +++ L  +G +
Sbjct: 342 VHSDGTVSSWGSNVDGALGVEQRSNSRV---PSKVFGLTDVATVSVGGYYAVALMGDGTV 398

Query: 286 LSCGSNVYGQLGREKQ-DMGMFPVDINFHPVSISSGLGHSLAICEVRSSNVTGGARGIVS 344
            S G+N  GQLG          PV       ++S+G  H +A+    S  V         
Sbjct: 399 RSWGNNDSGQLGDGTYIRHTPTPVPGLTGVTAVSAGEDHVVAVLSDGSPRV--------- 449

Query: 345 WGWNRSSQLGRMGPDNV----PLVVEGL 368
           WG N+  QLGR  P++V    P+ V GL
Sbjct: 450 WGDNQFMQLGRP-PESVNRGGPVQVPGL 476



 Score = 88.6 bits (218), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 100/340 (29%), Positives = 146/340 (42%), Gaps = 73/340 (21%)

Query: 32  FGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRN 91
           +GD     LG P      GG    P +VPGL ++ + V+AG  HSLA+  +G VWAWG N
Sbjct: 450 WGDNQFMQLGRPPESVNRGG----PVQVPGL-TEASLVAAGKTHSLALLADGTVWAWGDN 504

Query: 92  NEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQL 151
           +   LG G  +       P +V  L  V   AA  +   S A+  +G++  WG    GQL
Sbjct: 505 SFSALGLG--DEPGASPTPVQVPKLAGVRSLAAGENS--SLAVLANGTVMAWGYGLFGQL 560

Query: 152 GLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKAL 211
           G  +  +   +P  +  L+G  I  V+ G  ++LA  EDG ++ WGY+A G++G      
Sbjct: 561 G-SESASIFQIPEPIFGLSG--ITAVAMGHWYSLALREDGTVWSWGYNASGQLG------ 611

Query: 212 ESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGV-EVVDIA 270
                                           +G   E+       P  V G+ +V  IA
Sbjct: 612 --------------------------------DGTTDERP-----RPGQVAGLTQVTAIA 634

Query: 271 CGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDIN--FHPVSISSGLGHSLAIC 328
            G  H+L L  +G + + GSN  G LG   Q     PV +      +++++G  HSLA+ 
Sbjct: 635 AGASHALALRADGTVWAWGSNALGTLGDGTQTSRSTPVQVQGLTGVIAVAAGEYHSLALR 694

Query: 329 EVRSSNVTGGARGIVSWGWNRSSQLG------RMGPDNVP 362
           E  +         + SWG N   QLG      R  P  VP
Sbjct: 695 EDGT---------VWSWGNNNEGQLGDVTASSRQSPGQVP 725



 Score = 82.8 bits (203), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 65/189 (34%), Positives = 92/189 (48%), Gaps = 22/189 (11%)

Query: 28  AVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWA 87
           A+ + GDG+Q +   P  + G+ G              V +V+AG YHSLA+  +G VW+
Sbjct: 656 ALGTLGDGTQTSRSTPVQVQGLTG--------------VIAVAAGEYHSLALREDGTVWS 701

Query: 88  WGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSK 147
           WG NNE QLG     SR     P +V GL  V   AA     +++  G  G L  +GK+ 
Sbjct: 702 WGNNNEGQLGDVTASSR---QSPGQVPGLAGVQRIAAGEKHALAAVEG--GPLVAFGKNT 756

Query: 148 RGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNL 207
            GQLGLG+        SR E  +      ++ G  H LA   DG ++ WG +A G++GN 
Sbjct: 757 SGQLGLGERKENQ---SRGEIASLRNPRGIAAGIAHTLAVAADGTVWAWGANATGQLGNG 813

Query: 208 GKALESSPL 216
             A    P+
Sbjct: 814 EAANSPQPI 822



 Score = 81.6 bits (200), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 110/374 (29%), Positives = 163/374 (43%), Gaps = 49/374 (13%)

Query: 16  TSRIFMRSASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYH 75
           TS  F   + GT V S+G    GALG+         ++  P++V GL +DV +VS G Y+
Sbjct: 336 TSLSFAVHSDGT-VSSWGSNVDGALGVEQR-----SNSRVPSKVFGL-TDVATVSVGGYY 388

Query: 76  SLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIG 135
           ++A+  +G V +WG N+  QLG G        + P  V GL  V   +A    VV  A+ 
Sbjct: 389 AVALMGDGTVRSWGNNDSGQLGDGTYIR----HTPTPVPGLTGVTAVSAGEDHVV--AVL 442

Query: 136 DDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFG 195
            DGS  VWG ++  QLG   +      P +V  L    +V    G  H+LA   DG ++ 
Sbjct: 443 SDGSPRVWGDNQFMQLGRPPESVNRGGPVQVPGLTEASLVAA--GKTHSLALLADGTVWA 500

Query: 196 WGYSADGRIGNLGKALESSPLDSNID-----RSSESDQEISSSTIEKAQKLV-------S 243
           WG ++   +G LG    +SP    +      RS  + +  S + +     +         
Sbjct: 501 WGDNSFSALG-LGDEPGASPTPVQVPKLAGVRSLAAGENSSLAVLANGTVMAWGYGLFGQ 559

Query: 244 EGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDM 303
            G E      I    F + G+  V  A G  +SL L  +G + S G N  GQLG    D 
Sbjct: 560 LGSESASIFQIPEPIFGLSGITAV--AMGHWYSLALREDGTVWSWGYNASGQLGDGTTDE 617

Query: 304 GMFPVDIN--FHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMG---- 357
              P  +       +I++G  H+LA+           A G V W W  S+ LG +G    
Sbjct: 618 RPRPGQVAGLTQVTAIAAGASHALALR----------ADGTV-WAWG-SNALGTLGDGTQ 665

Query: 358 -PDNVPLVVEGLEG 370
              + P+ V+GL G
Sbjct: 666 TSRSTPVQVQGLTG 679



 Score = 38.1 bits (87), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 27/79 (34%), Positives = 36/79 (45%), Gaps = 6/79 (7%)

Query: 21  MRSASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVT 80
           + +  G  +V+FG  + G LGL               R P        ++AG  H+LAV 
Sbjct: 741 LAAVEGGPLVAFGKNTSGQLGLGERKENQSRGEIASLRNP------RGIAAGIAHTLAVA 794

Query: 81  NNGAVWAWGRNNEVQLGRG 99
            +G VWAWG N   QLG G
Sbjct: 795 ADGTVWAWGANATGQLGNG 813


>gi|40018552|ref|NP_954515.1| RCC1 and BTB domain-containing protein 2 [Rattus norvegicus]
 gi|81885332|sp|Q6P798.1|RCBT2_RAT RecName: Full=RCC1 and BTB domain-containing protein 2; AltName:
           Full=Chromosome condensation 1-like; AltName:
           Full=Regulator of chromosome condensation and BTB
           domain-containing protein 2
 gi|38197422|gb|AAH61766.1| Regulator of chromosome condensation (RCC1) and BTB (POZ) domain
           containing protein 2 [Rattus norvegicus]
 gi|149049940|gb|EDM02264.1| regulator of chromosome condensation (RCC1) and BTB (POZ) domain
           containing protein 2, isoform CRA_b [Rattus norvegicus]
          Length = 551

 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 60/151 (39%), Positives = 90/151 (59%), Gaps = 5/151 (3%)

Query: 66  VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAF 125
           V  V+ G YHSL +T++G V+AWG NN  Q+G G   S A    P+RV G  Q  V  + 
Sbjct: 154 VIEVACGSYHSLVLTSDGEVFAWGYNNSGQVGSG---STANQPIPRRVTGCLQNKVVMSI 210

Query: 126 ASG-VVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHA 184
           A G + S A+ D G ++VWG +  GQLGLG    +   P RV AL G ++ +V+ G+ H 
Sbjct: 211 ACGQMCSMAVVDTGEVYVWGYNGNGQLGLGSSGNQP-TPCRVAALQGIRVQRVACGYAHT 269

Query: 185 LAQTEDGKLFGWGYSADGRIGNLGKALESSP 215
           L  T++G+++ WG ++ G++G   K+ +S P
Sbjct: 270 LVLTDEGQIYAWGANSYGQLGTGNKSNQSYP 300



 Score = 87.0 bits (214), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 73/289 (25%), Positives = 128/289 (44%), Gaps = 25/289 (8%)

Query: 77  LAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCA-AFASGVVSSAIG 135
           L  T N  ++  G N    LG G ++S     +P+R++ L    + + ++ SG       
Sbjct: 59  LYTTVNDEIFVLGTNCSGCLGVGDIQSTI---EPRRLDSLTGKKIASLSYGSGPHIVLAT 115

Query: 136 DDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEA-LAGEKIVKVSFGWGHALAQTEDGKLF 194
            DG ++ WG +   QLG G      +VP  +   L+ +++++V+ G  H+L  T DG++F
Sbjct: 116 TDGEVFTWGHNAYSQLGNGT-TNHGLVPCHISTNLSNKQVIEVACGSYHSLVLTSDGEVF 174

Query: 195 GWGYSADGRIGNLGKALESSP------LDSNIDRSSESDQEISSSTIEKAQKLV------ 242
            WGY+  G++G+   A +  P      L + +  S    Q  S + ++  +  V      
Sbjct: 175 AWGYNNSGQVGSGSTANQPIPRRVTGCLQNKVVMSIACGQMCSMAVVDTGEVYVWGYNGN 234

Query: 243 -SEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQ 301
              G+      P       ++G+ V  +ACG+ H+LVL   G + + G+N YGQLG   +
Sbjct: 235 GQLGLGSSGNQPTPCRVAALQGIRVQRVACGYAHTLVLTDEGQIYAWGANSYGQLGTGNK 294

Query: 302 DMGMFPVDINFHPVSISSGLGHSLAICEVRSSNVTGGARG-IVSWGWNR 349
               +P      PV +       +A C    ++      G +  WG  R
Sbjct: 295 SNQSYPT-----PVVVEKDRIIEIAACHSAHTSAAKSQGGHVYMWGQCR 338



 Score = 65.1 bits (157), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 67/252 (26%), Positives = 109/252 (43%), Gaps = 63/252 (25%)

Query: 129 VVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWG-HALAQ 187
           V+ + + D+  ++V G +  G LG+G DI   I P R+++L G+KI  +S+G G H +  
Sbjct: 58  VLYTTVNDE--IFVLGTNCSGCLGVG-DIQSTIEPRRLDSLTGKKIASLSYGSGPHIVLA 114

Query: 188 TEDGKLFGWGYSADGRIGN--LGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEG 245
           T DG++F WG++A  ++GN      L    + +N+                         
Sbjct: 115 TTDGEVFTWGHNAYSQLGNGTTNHGLVPCHISTNLSNK---------------------- 152

Query: 246 MEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGM 305
                              +V+++ACG  HSLVL  +G + + G N  GQ+G        
Sbjct: 153 -------------------QVIEVACGSYHSLVLTSDGEVFAWGYNNSGQVGSGSTANQP 193

Query: 306 FPVDI-----NFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQ--LGRMGP 358
            P  +     N   +SI+ G   S+A+ +      TG    +  WG+N + Q  LG  G 
Sbjct: 194 IPRRVTGCLQNKVVMSIACGQMCSMAVVD------TGE---VYVWGYNGNGQLGLGSSGN 244

Query: 359 DNVPLVVEGLEG 370
              P  V  L+G
Sbjct: 245 QPTPCRVAALQG 256


>gi|383453816|ref|YP_005367805.1| RCC1 repeat-containing protein [Corallococcus coralloides DSM 2259]
 gi|380728295|gb|AFE04297.1| RCC1 repeat-containing protein [Corallococcus coralloides DSM 2259]
          Length = 748

 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 104/333 (31%), Positives = 154/333 (46%), Gaps = 40/333 (12%)

Query: 52  DAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPK 111
           D   P +V GL + VTSV+AG  +SLA+  +GAVWAWG N   QLG G L SR     P+
Sbjct: 89  DKASPVQVAGL-TQVTSVAAGDQYSLALDADGAVWAWGDNASGQLGDGTLTSRLL---PQ 144

Query: 112 RVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAG 171
           RV  L  V   A+  + V+  A+  DG++W WG ++  QLG G  +T + VP +V  L+G
Sbjct: 145 RVSALSNVVSLASGFAHVL--ALRADGTVWAWGDNRNNQLGDGT-LTRSSVPLQVPGLSG 201

Query: 172 EKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLD-SNIDRSSESDQEI 230
             +V V  G   +LA   DG L+ WG +  G++G+       +P+  +++D         
Sbjct: 202 --VVAVVAGGSSSLALRADGTLWAWGDNRYGQLGDGTTVRRITPVQVASLDSVVSVSVGA 259

Query: 231 SSSTIEKAQKLV-----------SEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVL 279
             +   +A   V            +G   ++  P+      V   +V  +  G  HSL +
Sbjct: 260 YHALALRADGTVWAWGHNAYGQLGDGTNTQRTQPVS-----VSLTDVRTLVAGNYHSLAV 314

Query: 280 GRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFH-PVSISSGLGHSLAICEVRSSNVTGG 338
             +G + + G N Y QLG         P+       V++ +G  HS+A+          G
Sbjct: 315 RTDGAVWAWGDNRYRQLGTGNLTSSPLPLQAGMTGGVTLVAGYRHSVAL----------G 364

Query: 339 ARGIV-SWGWNRSSQLG--RMGPDNVPLVVEGL 368
           A G   SWG N   QLG     P   P+ V GL
Sbjct: 365 ADGTAWSWGDNVFGQLGDTTFEPRMAPVQVSGL 397



 Score =  102 bits (253), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 88/268 (32%), Positives = 125/268 (46%), Gaps = 17/268 (6%)

Query: 52  DAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPK 111
           D   P +V GL   VT+++ G  HSLA+ +NG VWAWG N   QLG G    R     P 
Sbjct: 487 DRPTPVQVVGL-GGVTAIATGDNHSLALRSNGTVWAWGFNRYGQLGDGTAVDR---RQPV 542

Query: 112 RVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAG 171
           +  GL   N+ A  A G  S A+  DG++W +G +  GQLG G   T  +VP  V+A+  
Sbjct: 543 QASGLS--NIVAIAAGGSHSLALRSDGTVWAFGYNFDGQLGNGTR-TWTLVP--VQAVGL 597

Query: 172 EKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLD-------SNIDRSS 224
             +V ++ G  ++LA   DG ++ WGY+A G++G       + PL        ++I   S
Sbjct: 598 SSVVSLAAGSLYSLALRADGTVWAWGYNASGQLGVGTTQGSAQPLQVPGLSGITSIAAGS 657

Query: 225 ESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGV-EVVDIACGFDHSLVLGRNG 283
                + S     A     EG            P LV G+   V I  G  HSL +  +G
Sbjct: 658 YHSLALRSDGWVWAWGFNFEGQLGNGTSTPRLSPGLVAGMSNAVAIIAGDQHSLAMKADG 717

Query: 284 VLLSCGSNVYGQLGREKQDMGMFPVDIN 311
            + + G N+ GQLG        FPV + 
Sbjct: 718 TVWAWGLNIKGQLGTGDTTEAWFPVQVQ 745



 Score =  101 bits (252), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 96/315 (30%), Positives = 150/315 (47%), Gaps = 42/315 (13%)

Query: 69  VSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASG 128
           ++ G YHSLAV ++G V+AWG N   QLG G    +A+   P +V GL QV   A  A  
Sbjct: 55  LALGQYHSLAVHSDGTVFAWGFNRLGQLGDGTSRDKAS---PVQVAGLTQVTSVA--AGD 109

Query: 129 VVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQT 188
             S A+  DG++W WG +  GQLG G  +T  ++P RV AL+   +V ++ G+ H LA  
Sbjct: 110 QYSLALDADGAVWAWGDNASGQLGDGT-LTSRLLPQRVSALS--NVVSLASGFAHVLALR 166

Query: 189 EDGKLFGWGYSADGRIGNLGKALESSPLD--------SNIDRSSESDQEISSSTI----E 236
            DG ++ WG + + ++G+      S PL         + +   S S    +  T+    +
Sbjct: 167 ADGTVWAWGDNRNNQLGDGTLTRSSVPLQVPGLSGVVAVVAGGSSSLALRADGTLWAWGD 226

Query: 237 KAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVD----IACGFDHSLVLGRNGVLLSCGSNV 292
                + +G    +  P+         V  +D    ++ G  H+L L  +G + + G N 
Sbjct: 227 NRYGQLGDGTTVRRITPVQ--------VASLDSVVSVSVGAYHALALRADGTVWAWGHNA 278

Query: 293 YGQLGREKQDMGMFPVDINFHPV-SISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSS 351
           YGQLG         PV ++   V ++ +G  HSLA+        T GA  + +WG NR  
Sbjct: 279 YGQLGDGTNTQRTQPVSVSLTDVRTLVAGNYHSLAVR-------TDGA--VWAWGDNRYR 329

Query: 352 QLGRMGPDNVPLVVE 366
           QLG     + PL ++
Sbjct: 330 QLGTGNLTSSPLPLQ 344



 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 98/300 (32%), Positives = 143/300 (47%), Gaps = 26/300 (8%)

Query: 64  SDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCA 123
           +DV ++ AG+YHSLAV  +GAVWAWG N   QLG G L S      P +      V + A
Sbjct: 299 TDVRTLVAGNYHSLAVRTDGAVWAWGDNRYRQLGTGNLTSSPL---PLQAGMTGGVTLVA 355

Query: 124 AFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGH 183
            +   V   A+G DG+ W WG +  GQLG        + P +V  LA  +    S G  H
Sbjct: 356 GYRHSV---ALGADGTAWSWGDNVFGQLG-DTTFEPRMAPVQVSGLALGRADATS-GQLH 410

Query: 184 ALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNI-DRSSESDQEISSSTIEKAQKLV 242
            +    +G+L+ WG +  G++GN  +   S PL  N+ D  S +     ++ +     + 
Sbjct: 411 TVMLGANGRLWAWGDNQQGQLGNGTQQDSSLPLPVNLTDVISVASGYRHTAALRSDGTVW 470

Query: 243 SEGMEK-----EKYMPIIWEPFLVEGV-EVVDIACGFDHSLVLGRNGVLLSCGSNVYGQL 296
           + GM +     E  +     P  V G+  V  IA G +HSL L  NG + + G N YGQL
Sbjct: 471 TWGMNRFGQLGEGTVTDRPTPVQVVGLGGVTAIATGDNHSLALRSNGTVWAWGFNRYGQL 530

Query: 297 GREKQDMGMFPVDIN--FHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLG 354
           G         PV  +   + V+I++G  HSLA+   RS         + ++G+N   QLG
Sbjct: 531 GDGTAVDRRQPVQASGLSNIVAIAAGGSHSLAL---RSDGT------VWAFGYNFDGQLG 581



 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 87/320 (27%), Positives = 144/320 (45%), Gaps = 66/320 (20%)

Query: 56  PTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEG 115
           P +V GL       ++G  H++ +  NG +WAWG N + QLG G  +  +    P  V  
Sbjct: 391 PVQVSGLALGRADATSGQLHTVMLGANGRLWAWGDNQQGQLGNGTQQDSSL---PLPVNL 447

Query: 116 LDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIV 175
            D ++V + +     ++A+  DG++W WG ++ GQLG G  +T+   P +V  L G  + 
Sbjct: 448 TDVISVASGYRH---TAALRSDGTVWTWGMNRFGQLGEGT-VTDRPTPVQVVGLGG--VT 501

Query: 176 KVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTI 235
            ++ G  H+LA   +G ++ WG++  G++G+                          + +
Sbjct: 502 AIATGDNHSLALRSNGTVWAWGFNRYGQLGD-------------------------GTAV 536

Query: 236 EKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQ 295
           ++ Q + + G+                   +V IA G  HSL L  +G + + G N  GQ
Sbjct: 537 DRRQPVQASGLSN-----------------IVAIAAGGSHSLALRSDGTVWAFGYNFDGQ 579

Query: 296 LGREKQDMGMFPVD-INFHP-VSISSGLGHSLAICEVRSSNVTGGARGIV-SWGWNRSSQ 352
           LG   +   + PV  +     VS+++G  +SLA+           A G V +WG+N S Q
Sbjct: 580 LGNGTRTWTLVPVQAVGLSSVVSLAAGSLYSLALR----------ADGTVWAWGYNASGQ 629

Query: 353 L--GRMGPDNVPLVVEGLEG 370
           L  G       PL V GL G
Sbjct: 630 LGVGTTQGSAQPLQVPGLSG 649



 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 61/146 (41%), Positives = 85/146 (58%), Gaps = 13/146 (8%)

Query: 24  ASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNG 83
           A GT V ++G  + G LG+ T+       + +P +VPGL S +TS++AG YHSLA+ ++G
Sbjct: 615 ADGT-VWAWGYNASGQLGVGTTQ-----GSAQPLQVPGL-SGITSIAAGSYHSLALRSDG 667

Query: 84  AVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVW 143
            VWAWG N E QLG G    R +   P  V G+   N  A  A    S A+  DG++W W
Sbjct: 668 WVWAWGFNFEGQLGNGTSTPRLS---PGLVAGMS--NAVAIIAGDQHSLAMKADGTVWAW 722

Query: 144 GKSKRGQLGLGKDITEAIVPSRVEAL 169
           G + +GQLG G D TEA  P +V+ +
Sbjct: 723 GLNIKGQLGTG-DTTEAWFPVQVQGI 747



 Score = 61.2 bits (147), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 65/227 (28%), Positives = 100/227 (44%), Gaps = 63/227 (27%)

Query: 154 GKDITEAIVP--SRVEALAGEKI--VKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGK 209
           G D+  A  P  + V   AGE++  V+++ G  H+LA   DG +F WG++   R+G LG 
Sbjct: 28  GADLPGAAAPREATVRQRAGERLPPVRLALGQYHSLAVHSDGTVFAWGFN---RLGQLG- 83

Query: 210 ALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGV-EVVD 268
                                             +G  ++K  P+      V G+ +V  
Sbjct: 84  ----------------------------------DGTSRDKASPV-----QVAGLTQVTS 104

Query: 269 IACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINF--HPVSISSGLGHSLA 326
           +A G  +SL L  +G + + G N  GQLG       + P  ++   + VS++SG  H LA
Sbjct: 105 VAAGDQYSLALDADGAVWAWGDNASGQLGDGTLTSRLLPQRVSALSNVVSLASGFAHVLA 164

Query: 327 ICEVRSSNVTGGARGIV-SWGWNRSSQL--GRMGPDNVPLVVEGLEG 370
           +           A G V +WG NR++QL  G +   +VPL V GL G
Sbjct: 165 LR----------ADGTVWAWGDNRNNQLGDGTLTRSSVPLQVPGLSG 201


>gi|326509355|dbj|BAJ91594.1| predicted protein [Hordeum vulgare subsp. vulgare]
 gi|326518534|dbj|BAJ88296.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 442

 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 96/347 (27%), Positives = 154/347 (44%), Gaps = 65/347 (18%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPS-DVTSVSAGHYHSLAVTNNGAVWA 87
           + S+G G  G LG      G   D + P  +  L    +  ++ G  H L VT NG V +
Sbjct: 95  LYSWGWGDFGRLG-----HGNSSDVFNPQPIVALQGMKIKQIACGDSHCLTVTFNGQVHS 149

Query: 88  WGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSK 147
           WGRN   QLG G  +       P++++  + V V    A    ++AI + G L+ WG  +
Sbjct: 150 WGRNQNGQLGLGNNQDSLL---PQKIKAFEGVCVKMIAAGAEHTTAITEGGDLYGWGWGR 206

Query: 148 RGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNL 207
            G LGL  D  +  VP +V ++ GEK+V V+ GW H+++ +  G L+ +G+S  G++G+ 
Sbjct: 207 YGNLGL-SDRDDRSVPEKVSSVEGEKMVLVACGWRHSVSVSSSGALYTYGWSKYGQLGHG 265

Query: 208 GKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVV 267
                                       +    LV   +E  K +PI             
Sbjct: 266 ----------------------------DFQDHLVPRKLEALKDVPI------------S 285

Query: 268 DIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINF----HPVSISSGLGH 323
            I+ G+ H++ +  +G L   G N +GQ+G E       PV++NF      V ++ G  H
Sbjct: 286 QISGGWRHTMAVAEDGKLYGWGWNKFGQVGVEDNVDHCSPVEVNFPDEQKIVQVACGWRH 345

Query: 324 SLAICEVRSSNVTGGARGIVSWGWNRSSQLGR--MGPDNVPLVVEGL 368
           +LA+ E ++         I SWG   S QLG   +   N P +++ L
Sbjct: 346 TLALTENKN---------IFSWGRGASGQLGHGEIIDRNTPKMIDAL 383



 Score = 85.1 bits (209), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 86/315 (27%), Positives = 139/315 (44%), Gaps = 33/315 (10%)

Query: 59  VPGLPSD-VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLD 117
           VP  P   V  +SAG  HS A+ +   V +WGR  + QLG G  E R     P  +   D
Sbjct: 15  VPEAPEQSVILISAGANHSAALLSGQMVCSWGRGEDGQLGHGDSEDRPV---PTVLTSFD 71

Query: 118 QVNVCAAFASGVVSSAIGDDG-SLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVK 176
              V +       + A  DD   L+ WG    G+LG G   ++   P  + AL G KI +
Sbjct: 72  VPRVTSVICGADHTIAYSDDEMQLYSWGWGDFGRLGHGNS-SDVFNPQPIVALQGMKIKQ 130

Query: 177 VSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALES------SPLDSNIDRSSESDQEI 230
           ++ G  H L  T +G++  WG + +G++G LG   +S         +    +   +  E 
Sbjct: 131 IACGDSHCLTVTFNGQVHSWGRNQNGQLG-LGNNQDSLLPQKIKAFEGVCVKMIAAGAEH 189

Query: 231 SSSTIEKAQ-------KLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNG 283
           +++  E          +  + G+       +  +   VEG ++V +ACG+ HS+ +  +G
Sbjct: 190 TTAITEGGDLYGWGWGRYGNLGLSDRDDRSVPEKVSSVEGEKMVLVACGWRHSVSVSSSG 249

Query: 284 VLLSCGSNVYGQLGREKQDMGMFPVDINFH---PVS-ISSGLGHSLAICEVRSSNVTGGA 339
            L + G + YGQLG       + P  +      P+S IS G  H++A+ E          
Sbjct: 250 ALYTYGWSKYGQLGHGDFQDHLVPRKLEALKDVPISQISGGWRHTMAVAEDGK------- 302

Query: 340 RGIVSWGWNRSSQLG 354
             +  WGWN+  Q+G
Sbjct: 303 --LYGWGWNKFGQVG 315



 Score = 81.3 bits (199), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 68/238 (28%), Positives = 111/238 (46%), Gaps = 23/238 (9%)

Query: 3   LLKSVVHNHVNVLTSRIFMRSASGTAVVSFGD------GSQGALGLPTSLTGVGGDAYEP 56
           LL   +     V    I   +   TA+   GD      G  G LGL         D   P
Sbjct: 167 LLPQKIKAFEGVCVKMIAAGAEHTTAITEGGDLYGWGWGRYGNLGLSDR-----DDRSVP 221

Query: 57  TRVPGLPSD-VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEG 115
            +V  +  + +  V+ G  HS++V+++GA++ +G +   QLG G  +       P+++E 
Sbjct: 222 EKVSSVEGEKMVLVACGWRHSVSVSSSGALYTYGWSKYGQLGHGDFQDHLV---PRKLEA 278

Query: 116 LDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIV 175
           L  V +         + A+ +DG L+ WG +K GQ+G+ +D  +   P  V     +KIV
Sbjct: 279 LKDVPISQISGGWRHTMAVAEDGKLYGWGWNKFGQVGV-EDNVDHCSPVEVNFPDEQKIV 337

Query: 176 KVSFGWGHALAQTEDGKLFGWGYSADGRIG-------NLGKALESSPLDSNIDRSSES 226
           +V+ GW H LA TE+  +F WG  A G++G       N  K +++  LD +  +  ES
Sbjct: 338 QVACGWRHTLALTENKNIFSWGRGASGQLGHGEIIDRNTPKMIDALSLDGSACKQLES 395



 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 66/236 (27%), Positives = 100/236 (42%), Gaps = 57/236 (24%)

Query: 143 WGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDG-KLFGWGYSAD 201
           WG+ + GQLG G D  +  VP+ + +    ++  V  G  H +A ++D  +L+ WG+   
Sbjct: 45  WGRGEDGQLGHG-DSEDRPVPTVLTSFDVPRVTSVICGADHTIAYSDDEMQLYSWGWGDF 103

Query: 202 GRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLV 261
           GR+G+                        +SS +   Q +V+                 +
Sbjct: 104 GRLGHG-----------------------NSSDVFNPQPIVA-----------------L 123

Query: 262 EGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDIN-FHPVS---I 317
           +G+++  IACG  H L +  NG + S G N  GQLG       + P  I  F  V    I
Sbjct: 124 QGMKIKQIACGDSHCLTVTFNGQVHSWGRNQNGQLGLGNNQDSLLPQKIKAFEGVCVKMI 183

Query: 318 SSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPDN--VPLVVEGLEGE 371
           ++G  H+ AI E       GG   +  WGW R   LG    D+  VP  V  +EGE
Sbjct: 184 AAGAEHTTAITE-------GG--DLYGWGWGRYGNLGLSDRDDRSVPEKVSSVEGE 230


>gi|297797389|ref|XP_002866579.1| UVB-resistance 8 [Arabidopsis lyrata subsp. lyrata]
 gi|297312414|gb|EFH42838.1| UVB-resistance 8 [Arabidopsis lyrata subsp. lyrata]
          Length = 440

 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 97/353 (27%), Positives = 154/353 (43%), Gaps = 65/353 (18%)

Query: 23  SASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPS-DVTSVSAGHYHSLAVTN 81
           S SG  V S+G G  G LG      G   D + P  +  L    +  ++ G  H LAVT 
Sbjct: 83  SQSGMEVYSWGWGDFGRLG-----HGNSSDLFTPLPIKALHGIRIKQIACGDSHCLAVTM 137

Query: 82  NGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLW 141
            G V +WGRN   QLG G  E       P++++  + + +    A    ++A+ +DG L+
Sbjct: 138 EGEVQSWGRNQNGQLGLGDTEDSLV---PQKIQAFEGIRIKMVAAGAEHTAAVTEDGDLY 194

Query: 142 VWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSAD 201
            WG  + G LGLG D  + +VP RV +  GEK+  V+ GW H ++ +  G L+ +G+S  
Sbjct: 195 GWGWGRYGNLGLG-DRNDRLVPERVTSAGGEKMSMVACGWRHTISVSYSGALYTYGWSKY 253

Query: 202 GRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLV 261
           G++G+    LE   +   +       + +S+S I +                        
Sbjct: 254 GQLGH--GDLEDHLIPHKL-------EALSNSFISQ------------------------ 280

Query: 262 EGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINF----HPVSI 317
                  I+ G+ H++ L  +G L   G N +GQ+G         PV + F      V +
Sbjct: 281 -------ISGGWRHTMALTSDGKLYGWGWNKFGQVGVGNNLDQCSPVQVRFPDDQKVVQV 333

Query: 318 SSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQL--GRMGPDNVPLVVEGL 368
           S G  H+LA+ E  +         + +WG   + QL  G     N P ++E L
Sbjct: 334 SCGWRHTLAVTERNN---------VFAWGRGTNGQLGIGESVDRNFPKIIEAL 377



 Score = 88.6 bits (218), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 92/351 (26%), Positives = 137/351 (39%), Gaps = 104/351 (29%)

Query: 58  RVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLD 117
            V   P  V  +SAG  HS+A+ +   V +WGR  + QLG G  E R +      ++G  
Sbjct: 9   EVTAPPRTVLIISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQ 68

Query: 118 QVNVCAAFASGVVSS------------------------------------------AIG 135
            V+V       V  S                                          A G
Sbjct: 69  IVSVTCGADHTVAYSQSGMEVYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIACG 128

Query: 136 D--------DGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQ 187
           D        +G +  WG+++ GQLGLG D  +++VP +++A  G +I  V+ G  H  A 
Sbjct: 129 DSHCLAVTMEGEVQSWGRNQNGQLGLG-DTEDSLVPQKIQAFEGIRIKMVAAGAEHTAAV 187

Query: 188 TEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGME 247
           TEDG L+GWG+   GR GNLG       L    DR                +++ S G E
Sbjct: 188 TEDGDLYGWGW---GRYGNLG-------LGDRNDRLV-------------PERVTSAGGE 224

Query: 248 KEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFP 307
           K                    +ACG+ H++ +  +G L + G + YGQLG    +  + P
Sbjct: 225 KMSM-----------------VACGWRHTISVSYSGALYTYGWSKYGQLGHGDLEDHLIP 267

Query: 308 VDI----NFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLG 354
             +    N     IS G  H++A+              +  WGWN+  Q+G
Sbjct: 268 HKLEALSNSFISQISGGWRHTMALTSDGK---------LYGWGWNKFGQVG 309



 Score = 80.5 bits (197), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 67/215 (31%), Positives = 104/215 (48%), Gaps = 23/215 (10%)

Query: 32  FGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTS-VSAGHYHSLAVTNNGAVWAWGR 90
           +G G  G LGL     G   D   P RV     +  S V+ G  H+++V+ +GA++ +G 
Sbjct: 196 WGWGRYGNLGL-----GDRNDRLVPERVTSAGGEKMSMVACGWRHTISVSYSGALYTYGW 250

Query: 91  NNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQ 150
           +   QLG G LE       P ++E L    +         + A+  DG L+ WG +K GQ
Sbjct: 251 SKYGQLGHGDLEDHLI---PHKLEALSNSFISQISGGWRHTMALTSDGKLYGWGWNKFGQ 307

Query: 151 LGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIG----- 205
           +G+G ++ +   P +V     +K+V+VS GW H LA TE   +F WG   +G++G     
Sbjct: 308 VGVGNNLDQC-SPVQVRFPDDQKVVQVSCGWRHTLAVTERNNVFAWGRGTNGQLGIGESV 366

Query: 206 --NLGKALESSPLDSNIDRSSESDQEISSSTIEKA 238
             N  K +E+  +D        S Q I SS I+ +
Sbjct: 367 DRNFPKIIEALSVD------GASGQHIESSNIDPS 395


>gi|383320311|ref|YP_005381152.1| Alpha-tubulin suppressor and related RCC1 domain-containing protein
           [Methanocella conradii HZ254]
 gi|379321681|gb|AFD00634.1| Alpha-tubulin suppressor and related RCC1 domain-containing protein
           [Methanocella conradii HZ254]
          Length = 428

 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 106/333 (31%), Positives = 163/333 (48%), Gaps = 50/333 (15%)

Query: 66  VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAF 125
           V SVSAG YH+LA+ ++G VWAWG N   QLG G   +R+T   P +V   +  NV A F
Sbjct: 79  VKSVSAGMYHNLALKDDGTVWAWGYNRNGQLGDGTKITRST---PVQV---NISNVTAIF 132

Query: 126 ASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHAL 185
           A G+ S A+ DDG+LW WG +  GQLG G +IT  + P R+     + +  VS   G  +
Sbjct: 133 AGGLDSFALKDDGTLWGWGANFYGQLGDGTNITR-LSPVRIPI---DNVKVVSSKGGSTI 188

Query: 186 AQTEDGKLFGWGYS-----ADGR--IGNLG-----KALESSPLDSNIDRSSESDQEISSS 233
           A  +DG ++ WG +      +GR   G LG     K + S      +D   + D   + +
Sbjct: 189 ALKDDGTVWAWGCNIFAEDQEGRYQTGCLGVNSTDKFVLSPARVGGLDNVKDVDAGGTFT 248

Query: 234 TIEK-----------AQKLVSEGMEKEKYM--PIIWEPFLVEGV-EVVDIACGFDHSLVL 279
              K           +Q  + +G +    +  P    P  V G+ ++VDI+ G  H++ L
Sbjct: 249 IALKNDGTVWAWGDGSQGQLGKGFKMNGPLDDPYQSTPIQVIGLSDIVDISAGDRHAMAL 308

Query: 280 GRNGVLLSCGSNVYGQLGR-EKQDMGMFPVDINFHPV-SISSGLGHSLAICEVRSSNVTG 337
             +G + + G N+ G+LG     +    PV +N   V +IS+G  HSLA+ +  S     
Sbjct: 309 KDDGTIWTWGYNMMGELGDGSYWNTKPSPVKVNLEDVIAISAGGMHSLALKKDGS----- 363

Query: 338 GARGIVSWGWNRSSQLGRMGPDNV---PLVVEG 367
               + +WG N   ++G    D+V   PL++ G
Sbjct: 364 ----VWAWGGNYYGEVGDGSTDDVKPLPLMIIG 392



 Score = 81.3 bits (199), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 80/283 (28%), Positives = 123/283 (43%), Gaps = 63/283 (22%)

Query: 32  FGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRN 91
           +G    G LG  T++T +      P R+P    +V  VS+    ++A+ ++G VWAWG N
Sbjct: 150 WGANFYGQLGDGTNITRL-----SPVRIP--IDNVKVVSSKGGSTIALKDDGTVWAWGCN 202

Query: 92  --NEVQLGR---GALESRATWN---DPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVW 143
              E Q GR   G L   +T      P RV GLD  NV    A G  + A+ +DG++W W
Sbjct: 203 IFAEDQEGRYQTGCLGVNSTDKFVLSPARVGGLD--NVKDVDAGGTFTIALKNDGTVWAW 260

Query: 144 GKSKRGQLGLGKDIT----EAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYS 199
           G   +GQLG G  +     +    + ++ +    IV +S G  HA+A  +DG ++ WGY+
Sbjct: 261 GDGSQGQLGKGFKMNGPLDDPYQSTPIQVIGLSDIVDISAGDRHAMALKDDGTIWTWGYN 320

Query: 200 ADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPF 259
             G +G+ G    + P                                          P 
Sbjct: 321 MMGELGD-GSYWNTKP-----------------------------------------SPV 338

Query: 260 LVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQD 302
            V   +V+ I+ G  HSL L ++G + + G N YG++G    D
Sbjct: 339 KVNLEDVIAISAGGMHSLALKKDGSVWAWGGNYYGEVGDGSTD 381



 Score = 79.0 bits (193), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 78/318 (24%), Positives = 138/318 (43%), Gaps = 49/318 (15%)

Query: 66  VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAF 125
           V  +SAG +H++ + ++G +W WG N+  QL     +++        +  L+   V +  
Sbjct: 29  VEEISAGEFHNIVLCDDGTIWEWGNNSSGQLAESTDDTKYL-----LIHRLNMTGVKSVS 83

Query: 126 ASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHAL 185
           A    + A+ DDG++W WG ++ GQLG G  IT +  P +V       +  +  G   + 
Sbjct: 84  AGMYHNLALKDDGTVWAWGYNRNGQLGDGTKITRS-TPVQVNI---SNVTAIFAGGLDSF 139

Query: 186 AQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLV--- 242
           A  +DG L+GWG +  G++G+       SP+   ID       +  S+   K    V   
Sbjct: 140 ALKDDGTLWGWGANFYGQLGDGTNITRLSPVRIPIDNVKVVSSKGGSTIALKDDGTVWAW 199

Query: 243 --------SEGMEKEKYMPI------IWEPFLVEGVE-VVDIACGFDHSLVLGRNGVLLS 287
                    EG  +   + +      +  P  V G++ V D+  G   ++ L  +G + +
Sbjct: 200 GCNIFAEDQEGRYQTGCLGVNSTDKFVLSPARVGGLDNVKDVDAGGTFTIALKNDGTVWA 259

Query: 288 CGSNVYGQLGREKQDMGMFPVDINFHP-----------VSISSGLGHSLAICEVRSSNVT 336
            G    GQLG+  +  G  P+D  +             V IS+G  H++A+ +  +    
Sbjct: 260 WGDGSQGQLGKGFKMNG--PLDDPYQSTPIQVIGLSDIVDISAGDRHAMALKDDGT---- 313

Query: 337 GGARGIVSWGWNRSSQLG 354
                I +WG+N   +LG
Sbjct: 314 -----IWTWGYNMMGELG 326



 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 57/167 (34%), Positives = 88/167 (52%), Gaps = 15/167 (8%)

Query: 56  PTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPK---- 111
           P RV GL  +V  V AG   ++A+ N+G VWAWG  ++ QLG+G  +     +DP     
Sbjct: 229 PARVGGL-DNVKDVDAGGTFTIALKNDGTVWAWGDGSQGQLGKG-FKMNGPLDDPYQSTP 286

Query: 112 -RVEGL-DQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEAL 169
            +V GL D V++ A     +   A+ DDG++W WG +  G+LG G        P +V   
Sbjct: 287 IQVIGLSDIVDISAGDRHAM---ALKDDGTIWTWGYNMMGELGDGSYWNTKPSPVKVNL- 342

Query: 170 AGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPL 216
             E ++ +S G  H+LA  +DG ++ WG +  G +G+ G   +  PL
Sbjct: 343 --EDVIAISAGGMHSLALKKDGSVWAWGGNYYGEVGD-GSTDDVKPL 386



 Score = 75.5 bits (184), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 50/138 (36%), Positives = 76/138 (55%), Gaps = 10/138 (7%)

Query: 28  AVVSFGDGSQGALGLPTSLTGVGGDAYE--PTRVPGLPSDVTSVSAGHYHSLAVTNNGAV 85
            V ++GDGSQG LG    + G   D Y+  P +V GL SD+  +SAG  H++A+ ++G +
Sbjct: 256 TVWAWGDGSQGQLGKGFKMNGPLDDPYQSTPIQVIGL-SDIVDISAGDRHAMALKDDGTI 314

Query: 86  WAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGK 145
           W WG N   +LG G+      WN       ++  +V A  A G+ S A+  DGS+W WG 
Sbjct: 315 WTWGYNMMGELGDGSY-----WNTKPSPVKVNLEDVIAISAGGMHSLALKKDGSVWAWGG 369

Query: 146 SKRGQLGLGKDITEAIVP 163
           +  G++G G   T+ + P
Sbjct: 370 NYYGEVGDGS--TDDVKP 385



 Score = 40.0 bits (92), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 28/92 (30%), Positives = 49/92 (53%), Gaps = 11/92 (11%)

Query: 265 EVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVD-INFHPV-SISSGLG 322
           +V +I+ G  H++VL  +G +   G+N  GQL     D     +  +N   V S+S+G+ 
Sbjct: 28  KVEEISAGEFHNIVLCDDGTIWEWGNNSSGQLAESTDDTKYLLIHRLNMTGVKSVSAGMY 87

Query: 323 HSLAICEVRSSNVTGGARGIVSWGWNRSSQLG 354
           H+LA+ +  +         + +WG+NR+ QLG
Sbjct: 88  HNLALKDDGT---------VWAWGYNRNGQLG 110


>gi|326511771|dbj|BAJ92030.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 442

 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 96/347 (27%), Positives = 154/347 (44%), Gaps = 65/347 (18%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPS-DVTSVSAGHYHSLAVTNNGAVWA 87
           + S+G G  G LG      G   D + P  +  L    +  ++ G  H L VT NG V +
Sbjct: 95  LYSWGWGDFGRLG-----HGNSSDVFNPQPIVALQGMKIKQIACGDSHCLTVTFNGQVHS 149

Query: 88  WGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSK 147
           WGRN   QLG G  +       P++++  + V V    A    ++AI + G L+ WG  +
Sbjct: 150 WGRNQNGQLGLGNNQDSLL---PQKIKAFEGVCVKMIAAGAEHTTAITEGGDLYGWGWGR 206

Query: 148 RGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNL 207
            G LGL  D  +  VP +V ++ GEK+V V+ GW H+++ +  G L+ +G+S  G++G+ 
Sbjct: 207 YGNLGL-SDRDDRSVPEKVSSVEGEKMVLVACGWRHSVSVSSSGALYTYGWSKYGQLGHG 265

Query: 208 GKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVV 267
                                       +    LV   +E  K +PI             
Sbjct: 266 ----------------------------DFQDHLVPRKLEALKDVPI------------S 285

Query: 268 DIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFHP----VSISSGLGH 323
            I+ G+ H++ +  +G L   G N +GQ+G E       PV++NF      V ++ G  H
Sbjct: 286 QISGGWRHTMAVAEDGKLYGWGWNKFGQVGVEDNVDHCSPVEVNFPDEQKIVQVACGWRH 345

Query: 324 SLAICEVRSSNVTGGARGIVSWGWNRSSQLGR--MGPDNVPLVVEGL 368
           +LA+ E ++         I SWG   S QLG   +   N P +++ L
Sbjct: 346 TLALTENKN---------IFSWGRGASGQLGHGEIIDRNTPKMIDAL 383



 Score = 85.1 bits (209), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 86/315 (27%), Positives = 139/315 (44%), Gaps = 33/315 (10%)

Query: 59  VPGLPSD-VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLD 117
           VP  P   V  +SAG  HS A+ +   V +WGR  + QLG G  E R     P  +   D
Sbjct: 15  VPEAPEQSVILISAGANHSAALLSGQMVCSWGRGEDGQLGHGDSEDRPV---PTVLTSFD 71

Query: 118 QVNVCAAFASGVVSSAIGDDG-SLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVK 176
              V +       + A  DD   L+ WG    G+LG G   ++   P  + AL G KI +
Sbjct: 72  VPRVTSVICGADHTIAYSDDEMQLYSWGWGDFGRLGHGNS-SDVFNPQPIVALQGMKIKQ 130

Query: 177 VSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALES------SPLDSNIDRSSESDQEI 230
           ++ G  H L  T +G++  WG + +G++G LG   +S         +    +   +  E 
Sbjct: 131 IACGDSHCLTVTFNGQVHSWGRNQNGQLG-LGNNQDSLLPQKIKAFEGVCVKMIAAGAEH 189

Query: 231 SSSTIEKAQ-------KLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNG 283
           +++  E          +  + G+       +  +   VEG ++V +ACG+ HS+ +  +G
Sbjct: 190 TTAITEGGDLYGWGWGRYGNLGLSDRDDRSVPEKVSSVEGEKMVLVACGWRHSVSVSSSG 249

Query: 284 VLLSCGSNVYGQLGREKQDMGMFPVDINFH---PVS-ISSGLGHSLAICEVRSSNVTGGA 339
            L + G + YGQLG       + P  +      P+S IS G  H++A+ E          
Sbjct: 250 ALYTYGWSKYGQLGHGDFQDHLVPRKLEALKDVPISQISGGWRHTMAVAEDGK------- 302

Query: 340 RGIVSWGWNRSSQLG 354
             +  WGWN+  Q+G
Sbjct: 303 --LYGWGWNKFGQVG 315



 Score = 80.9 bits (198), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 68/238 (28%), Positives = 111/238 (46%), Gaps = 23/238 (9%)

Query: 3   LLKSVVHNHVNVLTSRIFMRSASGTAVVSFGD------GSQGALGLPTSLTGVGGDAYEP 56
           LL   +     V    I   +   TA+   GD      G  G LGL         D   P
Sbjct: 167 LLPQKIKAFEGVCVKMIAAGAEHTTAITEGGDLYGWGWGRYGNLGLSDR-----DDRSVP 221

Query: 57  TRVPGLPSD-VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEG 115
            +V  +  + +  V+ G  HS++V+++GA++ +G +   QLG G  +       P+++E 
Sbjct: 222 EKVSSVEGEKMVLVACGWRHSVSVSSSGALYTYGWSKYGQLGHGDFQDHLV---PRKLEA 278

Query: 116 LDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIV 175
           L  V +         + A+ +DG L+ WG +K GQ+G+ +D  +   P  V     +KIV
Sbjct: 279 LKDVPISQISGGWRHTMAVAEDGKLYGWGWNKFGQVGV-EDNVDHCSPVEVNFPDEQKIV 337

Query: 176 KVSFGWGHALAQTEDGKLFGWGYSADGRIG-------NLGKALESSPLDSNIDRSSES 226
           +V+ GW H LA TE+  +F WG  A G++G       N  K +++  LD +  +  ES
Sbjct: 338 QVACGWRHTLALTENKNIFSWGRGASGQLGHGEIIDRNTPKMIDALSLDGSACKQLES 395



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 66/236 (27%), Positives = 100/236 (42%), Gaps = 57/236 (24%)

Query: 143 WGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDG-KLFGWGYSAD 201
           WG+ + GQLG G D  +  VP+ + +    ++  V  G  H +A ++D  +L+ WG+   
Sbjct: 45  WGRGEDGQLGHG-DSEDRPVPTVLTSFDVPRVTSVICGADHTIAYSDDEMQLYSWGWGDF 103

Query: 202 GRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLV 261
           GR+G+                        +SS +   Q +V+                 +
Sbjct: 104 GRLGHG-----------------------NSSDVFNPQPIVA-----------------L 123

Query: 262 EGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDIN-FHPVS---I 317
           +G+++  IACG  H L +  NG + S G N  GQLG       + P  I  F  V    I
Sbjct: 124 QGMKIKQIACGDSHCLTVTFNGQVHSWGRNQNGQLGLGNNQDSLLPQKIKAFEGVCVKMI 183

Query: 318 SSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPDN--VPLVVEGLEGE 371
           ++G  H+ AI E       GG   +  WGW R   LG    D+  VP  V  +EGE
Sbjct: 184 AAGAEHTTAITE-------GG--DLYGWGWGRYGNLGLSDRDDRSVPEKVSSVEGE 230


>gi|226495309|ref|NP_001141147.1| putative regulator of chromosome condensation (RCC1) family protein
           [Zea mays]
 gi|194702882|gb|ACF85525.1| unknown [Zea mays]
 gi|224030327|gb|ACN34239.1| unknown [Zea mays]
 gi|414587150|tpg|DAA37721.1| TPA: putative regulator of chromosome condensation (RCC1) family
           protein [Zea mays]
          Length = 443

 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 98/350 (28%), Positives = 155/350 (44%), Gaps = 65/350 (18%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPS-DVTSVSAGHYHSLAVTNNGAVWA 87
           V S+G G  G LG      G   D + P  V  L    +  ++ G  H LAVT  G V +
Sbjct: 87  VYSWGWGDFGRLG-----HGNSSDVFTPQPVKALQGLKIKQIACGDSHCLAVTMAGEVQS 141

Query: 88  WGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSK 147
           WGRN   QLG G  E       P++++  + V V    A    ++A+ +DG L+ WG  +
Sbjct: 142 WGRNQNGQLGLGTTEDSLL---PQKIQAFESVCVKMIAAGAEHTAAVTEDGDLYGWGWGR 198

Query: 148 RGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNL 207
            G LGLG D  + ++P +V ++ GEK+V V+ GW H +  ++ G L+ +G+S  G++G+ 
Sbjct: 199 YGNLGLG-DRNDRLLPEKVSSVEGEKMVLVACGWRHTITVSDSGNLYTYGWSKYGQLGH- 256

Query: 208 GKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVV 267
                              D E           LV   +E  K   I             
Sbjct: 257 ------------------GDFE---------DHLVPHKVEALKDSTI------------S 277

Query: 268 DIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINF---HPVS-ISSGLGH 323
            I+ G+ H++ L   G L   G N +GQ+G    D    P  ++F     +S ++ G  H
Sbjct: 278 QISGGWRHTMALTSEGKLYGWGWNKFGQVGVGNNDDHSSPGQVSFPEDQKISQVACGWRH 337

Query: 324 SLAICEVRSSNVTGGARGIVSWGWNRSSQL--GRMGPDNVPLVVEGLEGE 371
           +LA+ E ++         + SWG   S QL  G +   N P++++ L  +
Sbjct: 338 TLALSEKKN---------VFSWGRGTSGQLGNGEIVDRNTPVLIDALSSD 378



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 84/313 (26%), Positives = 139/313 (44%), Gaps = 38/313 (12%)

Query: 63  PSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVC 122
           P  V  VSAG  HS+A+     + +WGR  + QLG G  E R     P  + G D   + 
Sbjct: 12  PQTVVLVSAGASHSVALLTGNVLCSWGRGEDGQLGHGDAEDRLV---PTVLSGFDAPAIT 68

Query: 123 AAFASGVVSSAIGDDG-SLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGW 181
           +       ++A  +D   ++ WG    G+LG G   ++   P  V+AL G KI +++ G 
Sbjct: 69  SVICGADHTTAYSEDELQVYSWGWGDFGRLGHGNS-SDVFTPQPVKALQGLKIKQIACGD 127

Query: 182 GHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKL 241
            H LA T  G++  WG + +G++G LG   E S L   I        ++ ++  E    +
Sbjct: 128 SHCLAVTMAGEVQSWGRNQNGQLG-LGTT-EDSLLPQKIQAFESVCVKMIAAGAEHTAAV 185

Query: 242 VSE----------------GMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVL 285
             +                G   ++ +P   +   VEG ++V +ACG+ H++ +  +G L
Sbjct: 186 TEDGDLYGWGWGRYGNLGLGDRNDRLLPE--KVSSVEGEKMVLVACGWRHTITVSDSGNL 243

Query: 286 LSCGSNVYGQLGREKQDMGMFPVDINFHPVS----ISSGLGHSLAICEVRSSNVTGGARG 341
            + G + YGQLG    +  + P  +     S    IS G  H++A+              
Sbjct: 244 YTYGWSKYGQLGHGDFEDHLVPHKVEALKDSTISQISGGWRHTMALTSEGK--------- 294

Query: 342 IVSWGWNRSSQLG 354
           +  WGWN+  Q+G
Sbjct: 295 LYGWGWNKFGQVG 307


>gi|119629205|gb|EAX08800.1| regulator of chromosome condensation (RCC1) and BTB (POZ) domain
           containing protein 2, isoform CRA_b [Homo sapiens]
          Length = 310

 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 57/159 (35%), Positives = 92/159 (57%), Gaps = 5/159 (3%)

Query: 65  DVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAA 124
            V  V+ G YHSL +T++G V+AWG NN  Q+G G+  ++     P+RV G  Q  V   
Sbjct: 153 QVIEVACGSYHSLVLTSDGEVFAWGYNNSGQVGSGSTVNQPI---PRRVTGCLQNKVVVT 209

Query: 125 FASG-VVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGH 183
            A G +   A+ D G ++VWG +  GQLGLG    +   P RV AL G ++ +V+ G+ H
Sbjct: 210 IACGQMCCMAVVDTGEVYVWGYNGNGQLGLGNSGNQP-TPCRVAALQGIRVQRVACGYAH 268

Query: 184 ALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDR 222
            L  T++G+++ WG ++ G++G   K+ +S P    +++
Sbjct: 269 TLVLTDEGQVYAWGANSYGQLGTGNKSNQSYPTPVTVEK 307



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 62/249 (24%), Positives = 115/249 (46%), Gaps = 19/249 (7%)

Query: 77  LAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNV-CAAFASGVVSSAIG 135
           L  T N  ++  G N    LG G ++S     +P+R++ L+   + C ++ SG       
Sbjct: 59  LYTTVNDEIFVLGTNCCGCLGLGDVQSTI---EPRRLDSLNGKKIACLSYGSGPHIVLAT 115

Query: 136 DDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEA-LAGEKIVKVSFGWGHALAQTEDGKLF 194
            +G ++ WG +   QLG G      +VP  +   L+ +++++V+ G  H+L  T DG++F
Sbjct: 116 TEGEVFTWGHNAYSQLGNGT-TNHGLVPCHISTNLSNKQVIEVACGSYHSLVLTSDGEVF 174

Query: 195 GWGYSADGRIGNLGKALESSP------LDSNIDRSSESDQEISSSTIEKAQKLV------ 242
            WGY+  G++G+     +  P      L + +  +    Q    + ++  +  V      
Sbjct: 175 AWGYNNSGQVGSGSTVNQPIPRRVTGCLQNKVVVTIACGQMCCMAVVDTGEVYVWGYNGN 234

Query: 243 -SEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQ 301
              G+      P       ++G+ V  +ACG+ H+LVL   G + + G+N YGQLG   +
Sbjct: 235 GQLGLGNSGNQPTPCRVAALQGIRVQRVACGYAHTLVLTDEGQVYAWGANSYGQLGTGNK 294

Query: 302 DMGMFPVDI 310
               +P  +
Sbjct: 295 SNQSYPTPV 303



 Score = 62.0 bits (149), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 65/270 (24%), Positives = 114/270 (42%), Gaps = 63/270 (23%)

Query: 111 KRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALA 170
           + ++ + Q  V  +  + V+ + + D+  ++V G +  G LGLG D+   I P R+++L 
Sbjct: 40  EELQLIRQACVFGSAGNEVLYTTVNDE--IFVLGTNCCGCLGLG-DVQSTIEPRRLDSLN 96

Query: 171 GEKIVKVSFGWG-HALAQTEDGKLFGWGYSADGRIGN--LGKALESSPLDSNIDRSSESD 227
           G+KI  +S+G G H +  T +G++F WG++A  ++GN      L    + +N+       
Sbjct: 97  GKKIACLSYGSGPHIVLATTEGEVFTWGHNAYSQLGNGTTNHGLVPCHISTNLSNK---- 152

Query: 228 QEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLS 287
                                                +V+++ACG  HSLVL  +G + +
Sbjct: 153 -------------------------------------QVIEVACGSYHSLVLTSDGEVFA 175

Query: 288 CGSNVYGQLGREKQDMGMFPVDI-----NFHPVSISSGLGHSLAICEVRSSNVTGGARGI 342
            G N  GQ+G         P  +     N   V+I+ G    +A+ +            +
Sbjct: 176 WGYNNSGQVGSGSTVNQPIPRRVTGCLQNKVVVTIACGQMCCMAVVDTGE---------V 226

Query: 343 VSWGWNRSSQ--LGRMGPDNVPLVVEGLEG 370
             WG+N + Q  LG  G    P  V  L+G
Sbjct: 227 YVWGYNGNGQLGLGNSGNQPTPCRVAALQG 256


>gi|410957262|ref|XP_003985250.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC6 [Felis catus]
          Length = 1031

 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 83/272 (30%), Positives = 127/272 (46%), Gaps = 45/272 (16%)

Query: 28  AVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPS-DVTSVSAGHYHSLAVTNNGAVW 86
           AV S GD S+G LG      G+  +  +P  +  L +  V  VS G  HSLAV   G V+
Sbjct: 54  AVHSCGDNSRGQLGR----RGLQREE-QPKPIQALETLRVELVSCGKEHSLAVCYKGRVF 108

Query: 87  AWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKS 146
           AWG  +E QLG G  E +     P++++ L  + +         S A+ +DG ++ WG +
Sbjct: 109 AWGAGSEGQLGIG--EFKEINLIPQKIKTLTGIKIIQVSCGNYHSLALSEDGQVFSWGSN 166

Query: 147 KRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGN 206
             GQLGLGK++     P RV +L G  + +V+ G  H+ A +  G  FGWG +  G++  
Sbjct: 167 SHGQLGLGKELPSQASPQRVRSLDGIPLAQVAAGGAHSFALSLSGTSFGWGSNNAGQLAF 226

Query: 207 LGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEV 266
            G         SN+   S   + +S+                            ++ + V
Sbjct: 227 FG---------SNVPVQSYKPRSVSA----------------------------LKTLGV 249

Query: 267 VDIACGFDHSLVLGRNGVLLSCGSNVYGQLGR 298
           V I+CG +H+ VL +NG + + G N  GQLG 
Sbjct: 250 VYISCGHEHTAVLTQNGKVFTFGDNSCGQLGH 281



 Score = 99.0 bits (245), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 90/315 (28%), Positives = 144/315 (45%), Gaps = 51/315 (16%)

Query: 60  PGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQV 119
           PG P ++   ++G  HSL + ++GAV + G N+  QLGR  L+       PK ++ L+ +
Sbjct: 31  PGGP-ELRQAASGERHSLLLLSDGAVHSCGDNSRGQLGRRGLQRE---EQPKPIQALETL 86

Query: 120 NVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSF 179
            V         S A+   G ++ WG    GQLG+G+     ++P +++ L G KI++VS 
Sbjct: 87  RVELVSCGKEHSLAVCYKGRVFAWGAGSEGQLGIGEFKEINLIPQKIKTLTGIKIIQVSC 146

Query: 180 GWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQ 239
           G  H+LA +EDG++F WG ++ G++G LGK L S            S Q + S       
Sbjct: 147 GNYHSLALSEDGQVFSWGSNSHGQLG-LGKELPSQA----------SPQRVRS------- 188

Query: 240 KLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGRE 299
                                ++G+ +  +A G  HS  L  +G     GSN  GQL   
Sbjct: 189 ---------------------LDGIPLAQVAAGGAHSFALSLSGTSFGWGSNNAGQLAFF 227

Query: 300 KQDMGMFPVDINFHPVSISS--GLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGR-- 355
             ++   PV  ++ P S+S+   LG     C    + V      + ++G N   QLG   
Sbjct: 228 GSNV---PVQ-SYKPRSVSALKTLGVVYISCGHEHTAVLTQNGKVFTFGDNSCGQLGHSP 283

Query: 356 MGPDNVPLVVEGLEG 370
                 P ++EG+EG
Sbjct: 284 TAEKTGPQLMEGIEG 298



 Score = 43.9 bits (102), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 35/99 (35%), Positives = 49/99 (49%), Gaps = 7/99 (7%)

Query: 20  FMRSASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPS-DVTSVSAGHYHSLA 78
           F  S SGT   SFG GS  A  L    + V   +Y+P  V  L +  V  +S GH H+  
Sbjct: 205 FALSLSGT---SFGWGSNNAGQLAFFGSNVPVQSYKPRSVSALKTLGVVYISCGHEHTAV 261

Query: 79  VTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLD 117
           +T NG V+ +G N+  QLG       A    P+ +EG++
Sbjct: 262 LTQNGKVFTFGDNSCGQLGHSP---TAEKTGPQLMEGIE 297


>gi|408501033|ref|YP_006864952.1| RCC1 repeat-containing protein [Bifidobacterium asteroides PRL2011]
 gi|408465857|gb|AFU71386.1| RCC1 repeat-containing protein [Bifidobacterium asteroides PRL2011]
          Length = 1190

 Score =  105 bits (263), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 97/322 (30%), Positives = 138/322 (42%), Gaps = 48/322 (14%)

Query: 48   GVGGDAYEPTRVP---GLPSDVT--SVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALE 102
            G   D + P RV    G  +D T   VSAG++HSLA+ ++G  +AWG NN  QLG G   
Sbjct: 770  GTSTDQHTPVRVKKPAGTSTDFTYVQVSAGYHHSLALGSDGNAYAWGYNNSGQLGDGTST 829

Query: 103  SRATWNDPKRVEGLDQVNVCAAFASGVVSS-AIGDDGSLWVWGKSKRGQLGLGKDITEAI 161
             RAT    K+  G          ++G   S A+G DG+ + WG +  GQLG G   T+  
Sbjct: 830  DRATSVRVKKPAGTSTDFTYVQVSAGAFHSLALGSDGNAYAWGLNNFGQLGDGTS-TDRA 888

Query: 162  VPSRVEALAGEKI----VKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLD 217
             P +V   AG        ++  G+ H+LA   DG  + WGY+  G++GN  K    SP  
Sbjct: 889  TPVKVGTPAGTPTDFTYAQIGAGYLHSLAVGSDGYAYAWGYNFSGQLGNNSKGGFFSPNP 948

Query: 218  SNI---DRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFD 274
            + +   + +S +D +                                +G++ V++  GF 
Sbjct: 949  NPVRVRNPASPNDAD--------------------------------KGLKAVNVTAGFW 976

Query: 275  HSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDI--NFHPVSISSGLGHSLAICEVRS 332
            HSL LG +G   + G N  GQLG         PV +  +  P   S GL   L       
Sbjct: 977  HSLALGSDGNAYAWGFNSNGQLGNNSSKDSTVPVLVSDSASPTDTSKGLKAVLVSTGQYH 1036

Query: 333  SNVTGGARGIVSWGWNRSSQLG 354
            S   G      +WG N   QLG
Sbjct: 1037 SLALGSDGNAYAWGDNGYGQLG 1058



 Score = 94.4 bits (233), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 97/344 (28%), Positives = 143/344 (41%), Gaps = 86/344 (25%)

Query: 55   EPTR--VPGLPSDVT--SVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDP 110
            +P R   P LP+D T   VSAG  HSLAV ++G  +AWGRN++ +LG G    + T   P
Sbjct: 722  QPDRKTYPDLPADFTYVQVSAGSQHSLAVGSDGNAYAWGRNDDGRLGDGTSTDQHT---P 778

Query: 111  KRVE-------GLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVP 163
             RV+           V V A +   +   A+G DG+ + WG +  GQLG G   T+    
Sbjct: 779  VRVKKPAGTSTDFTYVQVSAGYHHSL---ALGSDGNAYAWGYNNSGQLGDGTS-TDRATS 834

Query: 164  SRVEALAGEKI----VKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSN 219
             RV+  AG       V+VS G  H+LA   DG  + WG +  G++G+      ++P+   
Sbjct: 835  VRVKKPAGTSTDFTYVQVSAGAFHSLALGSDGNAYAWGLNNFGQLGDGTSTDRATPVKVG 894

Query: 220  IDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVL 279
                + +D                                         I  G+ HSL +
Sbjct: 895  TPAGTPTD------------------------------------FTYAQIGAGYLHSLAV 918

Query: 280  GRNGVLLSCGSNVYGQLGREKQDMGMF-----PV-----------DINFHPVSISSGLGH 323
            G +G   + G N  GQLG   +  G F     PV           D     V++++G  H
Sbjct: 919  GSDGYAYAWGYNFSGQLGNNSKG-GFFSPNPNPVRVRNPASPNDADKGLKAVNVTAGFWH 977

Query: 324  SLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPDN--VPLVV 365
            SLA+         G      +WG+N + QLG     +  VP++V
Sbjct: 978  SLAL---------GSDGNAYAWGFNSNGQLGNNSSKDSTVPVLV 1012



 Score = 89.4 bits (220), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 86/281 (30%), Positives = 120/281 (42%), Gaps = 62/281 (22%)

Query: 61   GLPSDVT--SVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRV---EG 115
            G  +D T   VSAG +HSLA+ ++G  +AWG NN  QLG G    RAT   P +V    G
Sbjct: 842  GTSTDFTYVQVSAGAFHSLALGSDGNAYAWGLNNFGQLGDGTSTDRAT---PVKVGTPAG 898

Query: 116  LDQVNVCAAFASGVVSS-AIGDDGSLWVWGKSKRGQLG---LGKDITEAIVPSRV----- 166
                   A   +G + S A+G DG  + WG +  GQLG    G   +    P RV     
Sbjct: 899  TPTDFTYAQIGAGYLHSLAVGSDGYAYAWGYNFSGQLGNNSKGGFFSPNPNPVRVRNPAS 958

Query: 167  --EALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSS 224
              +A  G K V V+ G+ H+LA   DG  + WG++++G++GN      + P+        
Sbjct: 959  PNDADKGLKAVNVTAGFWHSLALGSDGNAYAWGFNSNGQLGNNSSKDSTVPV-------- 1010

Query: 225  ESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGV 284
                            LVS+                 +G++ V ++ G  HSL LG +G 
Sbjct: 1011 ----------------LVSDSASPTD---------TSKGLKAVLVSTGQYHSLALGSDGN 1045

Query: 285  LLSCGSNVYGQLGREKQDMGM----------FPVDINFHPV 315
              + G N YGQLG      G            PV  N  PV
Sbjct: 1046 AYAWGDNGYGQLGNNSIPTGSNNNEARSPVPVPVVFNLPPV 1086



 Score = 84.7 bits (208), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 86/301 (28%), Positives = 133/301 (44%), Gaps = 70/301 (23%)

Query: 76  SLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQ---VNVCAAFASGVVSS 132
           SLAV ++G  +AWG N + +LG G     A  + P  V+  D+    ++ A F    VS+
Sbjct: 684 SLAVGSDGNAYAWGGNKKGELGDGTTSENAR-STPVMVKQPDRKTYPDLPADFTYVQVSA 742

Query: 133 ------AIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKI----VKVSFGWG 182
                 A+G DG+ + WG++  G+LG G   T+   P RV+  AG       V+VS G+ 
Sbjct: 743 GSQHSLAVGSDGNAYAWGRNDDGRLGDGTS-TDQHTPVRVKKPAGTSTDFTYVQVSAGYH 801

Query: 183 HALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLV 242
           H+LA   DG  + WGY+  G++G+           ++ DR+       +S  ++K     
Sbjct: 802 HSLALGSDGNAYAWGYNNSGQLGD----------GTSTDRA-------TSVRVKKPAGTS 844

Query: 243 SEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQD 302
           ++                      V ++ G  HSL LG +G   + G N +GQLG     
Sbjct: 845 TD-------------------FTYVQVSAGAFHSLALGSDGNAYAWGLNNFGQLGDGTST 885

Query: 303 MGMFPVDI--------NFHPVSISSGLGHSLAICEVRSSNVTGGARGIV-SWGWNRSSQL 353
               PV +        +F    I +G  HSLA+          G+ G   +WG+N S QL
Sbjct: 886 DRATPVKVGTPAGTPTDFTYAQIGAGYLHSLAV----------GSDGYAYAWGYNFSGQL 935

Query: 354 G 354
           G
Sbjct: 936 G 936



 Score = 75.5 bits (184), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 64/181 (35%), Positives = 88/181 (48%), Gaps = 25/181 (13%)

Query: 48   GVGGDAYEPTRV---PGLPSDVT--SVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALE 102
            G   D   P +V    G P+D T   + AG+ HSLAV ++G  +AWG N   QLG  +  
Sbjct: 882  GTSTDRATPVKVGTPAGTPTDFTYAQIGAGYLHSLAVGSDGYAYAWGYNFSGQLGNNSKG 941

Query: 103  SRATWN-DPKRV----------EGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQL 151
               + N +P RV          +GL  VNV A F   +   A+G DG+ + WG +  GQL
Sbjct: 942  GFFSPNPNPVRVRNPASPNDADKGLKAVNVTAGFWHSL---ALGSDGNAYAWGFNSNGQL 998

Query: 152  G--LGKDITEAIV----PSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIG 205
            G    KD T  ++     S  +   G K V VS G  H+LA   DG  + WG +  G++G
Sbjct: 999  GNNSSKDSTVPVLVSDSASPTDTSKGLKAVLVSTGQYHSLALGSDGNAYAWGDNGYGQLG 1058

Query: 206  N 206
            N
Sbjct: 1059 N 1059


>gi|148703915|gb|EDL35862.1| regulator of chromosome condensation (RCC1) and BTB (POZ) domain
           containing protein 2, isoform CRA_b [Mus musculus]
 gi|148703916|gb|EDL35863.1| regulator of chromosome condensation (RCC1) and BTB (POZ) domain
           containing protein 2, isoform CRA_b [Mus musculus]
          Length = 560

 Score =  105 bits (263), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 60/151 (39%), Positives = 89/151 (58%), Gaps = 5/151 (3%)

Query: 66  VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAF 125
           V  V+ G YHSL +T++G V+AWG NN  Q+G G   S A    P+RV G  Q  V    
Sbjct: 163 VIEVACGSYHSLVLTSDGEVFAWGYNNSGQVGSG---STANQPIPRRVTGCLQNKVVMNI 219

Query: 126 ASG-VVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHA 184
           A G + S A+ D G ++VWG +  GQLGLG    +   P RV AL G ++ +V+ G+ H 
Sbjct: 220 ACGQMCSMAVVDTGEVYVWGYNGNGQLGLGSSGNQP-TPCRVAALQGIRVQRVACGYAHT 278

Query: 185 LAQTEDGKLFGWGYSADGRIGNLGKALESSP 215
           L  T++G+++ WG ++ G++G   K+ +S P
Sbjct: 279 LVLTDEGQIYAWGANSYGQLGTGNKSNQSYP 309



 Score = 85.9 bits (211), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 72/289 (24%), Positives = 128/289 (44%), Gaps = 25/289 (8%)

Query: 77  LAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCA-AFASGVVSSAIG 135
           L  T N  ++  G N    LG G ++S     +P+R++ L    + + ++ SG       
Sbjct: 68  LYTTVNDEIFVLGTNCSGCLGVGDIQSTI---EPRRLDSLTGKKIASLSYGSGPHIVLAT 124

Query: 136 DDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEA-LAGEKIVKVSFGWGHALAQTEDGKLF 194
            DG ++ WG +   QLG G      +VP  +   L+ +++++V+ G  H+L  T DG++F
Sbjct: 125 TDGEVFTWGHNAYSQLGNGT-TNHGLVPCHISTNLSNKQVIEVACGSYHSLVLTSDGEVF 183

Query: 195 GWGYSADGRIGNLGKALESSP------LDSNIDRSSESDQEISSSTIEKAQKLV------ 242
            WGY+  G++G+   A +  P      L + +  +    Q  S + ++  +  V      
Sbjct: 184 AWGYNNSGQVGSGSTANQPIPRRVTGCLQNKVVMNIACGQMCSMAVVDTGEVYVWGYNGN 243

Query: 243 -SEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQ 301
              G+      P       ++G+ V  +ACG+ H+LVL   G + + G+N YGQLG   +
Sbjct: 244 GQLGLGSSGNQPTPCRVAALQGIRVQRVACGYAHTLVLTDEGQIYAWGANSYGQLGTGNK 303

Query: 302 DMGMFPVDINFHPVSISSGLGHSLAICEVRSSNVTGGARG-IVSWGWNR 349
               +P      PV +       +A C    ++      G +  WG  R
Sbjct: 304 SNQSYPT-----PVVVEKDRIIEIAACHSAHTSAAKTQGGHVYMWGQCR 347



 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 68/270 (25%), Positives = 117/270 (43%), Gaps = 63/270 (23%)

Query: 111 KRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALA 170
           + ++ + Q  V  +  + V+ + + D+  ++V G +  G LG+G DI   I P R+++L 
Sbjct: 49  EELQLIRQACVFGSAGNEVLYTTVNDE--IFVLGTNCSGCLGVG-DIQSTIEPRRLDSLT 105

Query: 171 GEKIVKVSFGWG-HALAQTEDGKLFGWGYSADGRIGN--LGKALESSPLDSNIDRSSESD 227
           G+KI  +S+G G H +  T DG++F WG++A  ++GN      L    + +N+       
Sbjct: 106 GKKIASLSYGSGPHIVLATTDGEVFTWGHNAYSQLGNGTTNHGLVPCHISTNLSNK---- 161

Query: 228 QEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLS 287
                                                +V+++ACG  HSLVL  +G + +
Sbjct: 162 -------------------------------------QVIEVACGSYHSLVLTSDGEVFA 184

Query: 288 CGSNVYGQLGREKQDMGMFPVDI-----NFHPVSISSGLGHSLAICEVRSSNVTGGARGI 342
            G N  GQ+G         P  +     N   ++I+ G   S+A+ +      TG    +
Sbjct: 185 WGYNNSGQVGSGSTANQPIPRRVTGCLQNKVVMNIACGQMCSMAVVD------TGE---V 235

Query: 343 VSWGWNRSSQ--LGRMGPDNVPLVVEGLEG 370
             WG+N + Q  LG  G    P  V  L+G
Sbjct: 236 YVWGYNGNGQLGLGSSGNQPTPCRVAALQG 265


>gi|428179449|gb|EKX48320.1| hypothetical protein GUITHDRAFT_162457 [Guillardia theta CCMP2712]
          Length = 580

 Score =  105 bits (263), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 94/338 (27%), Positives = 149/338 (44%), Gaps = 50/338 (14%)

Query: 69  VSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASG 128
           V+ G +H++AVT +G V +WG  NE QLG G    +     P  V+ L    VC      
Sbjct: 75  VACGGHHTVAVTEDGEVVSWGWGNEGQLGSGNAFDQTV---PAVVKALSNHRVCGVACGY 131

Query: 129 VVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQT 188
             ++ + D G +  WGK   GQLG G D T +++P  V  L  EKI +++ G  H LA +
Sbjct: 132 YHTAVVTDVGLVMCWGKGNSGQLGQG-DWTSSLLPRTVSTLYNEKIRQIACGMAHTLALS 190

Query: 189 EDGKLFGWGYSADGRIGNLGKALE-----SSPLDSNIDRSSESDQEISSS----TIEKAQ 239
            +G+++ WG  ADG++G +GK  E     ++P    +D   + +     S     I    
Sbjct: 191 VNGEIYSWGAGADGQLG-VGKHQEETADVATPQKVRVDEEEKFEFIACGSRHCMAITDDC 249

Query: 240 KLVSEGM----------EKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCG 289
           +L S G+           + ++ P +     +E + +  +A G  H+ VL  NG + +CG
Sbjct: 250 RLFSWGLGADGRLGLGDSESRFSPTVVRRS-IENLRICYVAAGGHHTAVLSDNGEIFTCG 308

Query: 290 SNVYGQLGREKQDMGMFPVDINFHPVSISSGLGHS---LAICEVRSSNVTGGARG----- 341
              YGQLG    D  +         +  +  L H    L I ++R   +   A G     
Sbjct: 309 RGSYGQLGHGDADPQL--------TLKKARALRHGCLLLHIVQLRDKKIIKAACGDTHTL 360

Query: 342 -------IVSWGWNRSSQLGRMGPD--NVPLVVEGLEG 370
                  + +WG     QLG  G +  N P+ +  L G
Sbjct: 361 VISTAGEVFAWGAAEDGQLGTGGTEGANSPVELTSLRG 398



 Score = 43.9 bits (102), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 61/242 (25%), Positives = 98/242 (40%), Gaps = 77/242 (31%)

Query: 135 GDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVE------------ALAGEKI---VKVSF 179
           G   SL  WG+   G+LG G  +++ + P R+             ALA E +   + V+ 
Sbjct: 21  GKRTSLQGWGEF--GRLGHGDTLSQ-LEPKRLRFDKRFPVSLSFTALAHESLNGAIYVAC 77

Query: 180 GWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQ 239
           G  H +A TEDG++  WG+  +G++G+ G A                DQ +         
Sbjct: 78  GGHHTVAVTEDGEVVSWGWGNEGQLGS-GNAF---------------DQTV--------- 112

Query: 240 KLVSEGMEKEKYMPIIWEPFLVEGV---EVVDIACGFDHSLVLGRNGVLLSCGSNVYGQL 296
                             P +V+ +    V  +ACG+ H+ V+   G+++  G    GQL
Sbjct: 113 ------------------PAVVKALSNHRVCGVACGYYHTAVVTDVGLVMCWGKGNSGQL 154

Query: 297 GREKQDMGMFPVDI----NFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQ 352
           G+      + P  +    N     I+ G+ H+LA+      +V G    I SWG     Q
Sbjct: 155 GQGDWTSSLLPRTVSTLYNEKIRQIACGMAHTLAL------SVNG---EIYSWGAGADGQ 205

Query: 353 LG 354
           LG
Sbjct: 206 LG 207


>gi|74144437|dbj|BAE36068.1| unnamed protein product [Mus musculus]
          Length = 527

 Score =  105 bits (263), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 60/151 (39%), Positives = 89/151 (58%), Gaps = 5/151 (3%)

Query: 66  VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAF 125
           V  V+ G YHSL +T++G V+AWG NN  Q+G G   S A    P+RV G  Q  V    
Sbjct: 130 VIEVACGSYHSLVLTSDGEVFAWGYNNSGQVGSG---STANQPIPRRVTGCLQNKVVMNI 186

Query: 126 ASG-VVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHA 184
           A G + S A+ D G ++VWG +  GQLGLG    +   P RV AL G ++ +V+ G+ H 
Sbjct: 187 ACGQMCSMAVVDTGEVYVWGYNGNGQLGLGSSGNQP-TPCRVAALQGIRVQRVACGYAHT 245

Query: 185 LAQTEDGKLFGWGYSADGRIGNLGKALESSP 215
           L  T++G+++ WG ++ G++G   K+ +S P
Sbjct: 246 LVLTDEGQIYAWGANSYGQLGTGNKSNQSYP 276



 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 72/289 (24%), Positives = 128/289 (44%), Gaps = 25/289 (8%)

Query: 77  LAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCA-AFASGVVSSAIG 135
           L  T N  ++  G N    LG G ++S     +P+R++ L    + + ++ SG       
Sbjct: 35  LYTTVNDEIFVLGTNCSGCLGVGDIQSTI---EPRRLDSLTGKKIASLSYGSGPHIVLAT 91

Query: 136 DDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEA-LAGEKIVKVSFGWGHALAQTEDGKLF 194
            DG ++ WG +   QLG G      +VP  +   L+ +++++V+ G  H+L  T DG++F
Sbjct: 92  TDGEVFTWGHNAYSQLGNGT-TNHGLVPCHISTNLSNKQVIEVACGSYHSLVLTSDGEVF 150

Query: 195 GWGYSADGRIGNLGKALESSP------LDSNIDRSSESDQEISSSTIEKAQKLV------ 242
            WGY+  G++G+   A +  P      L + +  +    Q  S + ++  +  V      
Sbjct: 151 AWGYNNSGQVGSGSTANQPIPRRVTGCLQNKVVMNIACGQMCSMAVVDTGEVYVWGYNGN 210

Query: 243 -SEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQ 301
              G+      P       ++G+ V  +ACG+ H+LVL   G + + G+N YGQLG   +
Sbjct: 211 GQLGLGSSGNQPTPCRVAALQGIRVQRVACGYAHTLVLTDEGQIYAWGANSYGQLGTGNK 270

Query: 302 DMGMFPVDINFHPVSISSGLGHSLAICEVRSSNVTGGARG-IVSWGWNR 349
               +P      PV +       +A C    ++      G +  WG  R
Sbjct: 271 SNQSYPT-----PVVVEKDRIIEIAACHSAHTSAAKTQGGHVYMWGQCR 314



 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 66/252 (26%), Positives = 109/252 (43%), Gaps = 63/252 (25%)

Query: 129 VVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWG-HALAQ 187
           V+ + + D+  ++V G +  G LG+G DI   I P R+++L G+KI  +S+G G H +  
Sbjct: 34  VLYTTVNDE--IFVLGTNCSGCLGVG-DIQSTIEPRRLDSLTGKKIASLSYGSGPHIVLA 90

Query: 188 TEDGKLFGWGYSADGRIGN--LGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEG 245
           T DG++F WG++A  ++GN      L    + +N+                         
Sbjct: 91  TTDGEVFTWGHNAYSQLGNGTTNHGLVPCHISTNLSNK---------------------- 128

Query: 246 MEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGM 305
                              +V+++ACG  HSLVL  +G + + G N  GQ+G        
Sbjct: 129 -------------------QVIEVACGSYHSLVLTSDGEVFAWGYNNSGQVGSGSTANQP 169

Query: 306 FPVDI-----NFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQ--LGRMGP 358
            P  +     N   ++I+ G   S+A+ +      TG    +  WG+N + Q  LG  G 
Sbjct: 170 IPRRVTGCLQNKVVMNIACGQMCSMAVVD------TGE---VYVWGYNGNGQLGLGSSGN 220

Query: 359 DNVPLVVEGLEG 370
              P  V  L+G
Sbjct: 221 QPTPCRVAALQG 232


>gi|380792513|gb|AFE68132.1| RCC1 and BTB domain-containing protein 2, partial [Macaca mulatta]
          Length = 369

 Score =  105 bits (263), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 61/177 (34%), Positives = 97/177 (54%), Gaps = 5/177 (2%)

Query: 65  DVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAA 124
            V  V+ G YHSL +T++G V+AWG NN  Q+G G+  ++     P+RV G  Q  V   
Sbjct: 153 QVIEVACGSYHSLVLTSDGEVFAWGYNNSGQVGSGSTVNQPI---PRRVTGCLQNKVVVT 209

Query: 125 FASG-VVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGH 183
            A G +   A+ D G ++VWG +  GQLGLG    +   P RV AL G ++ +V+ G+ H
Sbjct: 210 IACGQMCCMAVVDTGEVYVWGYNGNGQLGLGSSGNQP-TPCRVAALQGIRVQRVACGYAH 268

Query: 184 ALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQK 240
            L  T++G+++ WG ++ G++G   K+ +S P    +++    +     ST   A K
Sbjct: 269 TLVLTDEGQVYAWGANSYGQLGTGNKSNQSYPTPVTMEKDRIIEIAACHSTHTSAAK 325



 Score = 82.8 bits (203), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 61/251 (24%), Positives = 115/251 (45%), Gaps = 19/251 (7%)

Query: 77  LAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCA-AFASGVVSSAIG 135
           L  T N  ++  G N    LG G ++S     +P+R++ L    + + ++ SG       
Sbjct: 59  LYTTVNDEIFVLGTNCCGCLGLGDVQSTI---EPRRLDSLSGKKIASLSYGSGPHIVLAT 115

Query: 136 DDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEA-LAGEKIVKVSFGWGHALAQTEDGKLF 194
            +G ++ WG +   QLG G      +VP ++   L+ +++++V+ G  H+L  T DG++F
Sbjct: 116 TEGEVFTWGHNAYSQLGNGTT-NHGLVPCQISTNLSNKQVIEVACGSYHSLVLTSDGEVF 174

Query: 195 GWGYSADGRIGNLGKALESSP------LDSNIDRSSESDQEISSSTIEKAQKLV------ 242
            WGY+  G++G+     +  P      L + +  +    Q    + ++  +  V      
Sbjct: 175 AWGYNNSGQVGSGSTVNQPIPRRVTGCLQNKVVVTIACGQMCCMAVVDTGEVYVWGYNGN 234

Query: 243 -SEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQ 301
              G+      P       ++G+ V  +ACG+ H+LVL   G + + G+N YGQLG   +
Sbjct: 235 GQLGLGSSGNQPTPCRVAALQGIRVQRVACGYAHTLVLTDEGQVYAWGANSYGQLGTGNK 294

Query: 302 DMGMFPVDINF 312
               +P  +  
Sbjct: 295 SNQSYPTPVTM 305



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 66/270 (24%), Positives = 115/270 (42%), Gaps = 63/270 (23%)

Query: 111 KRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALA 170
           + ++ + Q  V  +  + V+ + + D+  ++V G +  G LGLG D+   I P R+++L+
Sbjct: 40  EELQLIRQACVFGSAGNEVLYTTVNDE--IFVLGTNCCGCLGLG-DVQSTIEPRRLDSLS 96

Query: 171 GEKIVKVSFGWG-HALAQTEDGKLFGWGYSADGRIGN--LGKALESSPLDSNIDRSSESD 227
           G+KI  +S+G G H +  T +G++F WG++A  ++GN      L    + +N+       
Sbjct: 97  GKKIASLSYGSGPHIVLATTEGEVFTWGHNAYSQLGNGTTNHGLVPCQISTNLSNK---- 152

Query: 228 QEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLS 287
                                                +V+++ACG  HSLVL  +G + +
Sbjct: 153 -------------------------------------QVIEVACGSYHSLVLTSDGEVFA 175

Query: 288 CGSNVYGQLGREKQDMGMFPVDI-----NFHPVSISSGLGHSLAICEVRSSNVTGGARGI 342
            G N  GQ+G         P  +     N   V+I+ G    +A+ +     V       
Sbjct: 176 WGYNNSGQVGSGSTVNQPIPRRVTGCLQNKVVVTIACGQMCCMAVVDTGEVYV------- 228

Query: 343 VSWGWNRSSQ--LGRMGPDNVPLVVEGLEG 370
             WG+N + Q  LG  G    P  V  L+G
Sbjct: 229 --WGYNGNGQLGLGSSGNQPTPCRVAALQG 256


>gi|444732065|gb|ELW72388.1| RCC1 and BTB domain-containing protein 2 [Tupaia chinensis]
          Length = 527

 Score =  105 bits (263), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 60/151 (39%), Positives = 89/151 (58%), Gaps = 5/151 (3%)

Query: 66  VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAF 125
           V  V+ G YHSL +T++G V+AWG NN  Q+G G   S A    P+RV G  Q  V    
Sbjct: 130 VIEVACGSYHSLVLTSDGEVFAWGYNNSGQVGSG---STANQPIPRRVTGCLQNKVVVNI 186

Query: 126 ASG-VVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHA 184
           A G + S A+ D G ++VWG +  GQLGLG    +   P RV AL G ++ +V+ G+ H 
Sbjct: 187 ACGQMCSMAVVDTGEVYVWGYNGNGQLGLGSSGNQP-TPCRVSALQGIRVQRVACGYAHT 245

Query: 185 LAQTEDGKLFGWGYSADGRIGNLGKALESSP 215
           L  T++G+++ WG ++ G++G   K+ +S P
Sbjct: 246 LVLTDEGQVYAWGANSYGQLGTGNKSNQSYP 276



 Score = 85.5 bits (210), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 72/289 (24%), Positives = 128/289 (44%), Gaps = 25/289 (8%)

Query: 77  LAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNV-CAAFASGVVSSAIG 135
           L  T N  ++  G N    LG G ++S     +P+R++ L    + C ++ SG       
Sbjct: 35  LYTTVNDEIFVLGTNCCGCLGLGDVQSTI---EPRRLDCLSGKKIACLSYGSGPHVVLAT 91

Query: 136 DDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEA-LAGEKIVKVSFGWGHALAQTEDGKLF 194
            +G ++ WG +   QLG G      +VP  +   L+ +++++V+ G  H+L  T DG++F
Sbjct: 92  TEGEVFTWGHNAYSQLGNGT-TNHGLVPCHISTNLSNKQVIEVACGSYHSLVLTSDGEVF 150

Query: 195 GWGYSADGRIGNLGKALESSP------LDSNIDRSSESDQEISSSTIEKAQKLV------ 242
            WGY+  G++G+   A +  P      L + +  +    Q  S + ++  +  V      
Sbjct: 151 AWGYNNSGQVGSGSTANQPIPRRVTGCLQNKVVVNIACGQMCSMAVVDTGEVYVWGYNGN 210

Query: 243 -SEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQ 301
              G+      P       ++G+ V  +ACG+ H+LVL   G + + G+N YGQLG   +
Sbjct: 211 GQLGLGSSGNQPTPCRVSALQGIRVQRVACGYAHTLVLTDEGQVYAWGANSYGQLGTGNK 270

Query: 302 DMGMFPVDINFHPVSISSGLGHSLAICEVRSSNVTGGARG-IVSWGWNR 349
               +P      PV +       +A C    ++      G +  WG  R
Sbjct: 271 SNQSYPT-----PVVVEKDRIIEIAACHSAHTSAAKTQGGHVYMWGQCR 314



 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 66/252 (26%), Positives = 109/252 (43%), Gaps = 63/252 (25%)

Query: 129 VVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWG-HALAQ 187
           V+ + + D+  ++V G +  G LGLG D+   I P R++ L+G+KI  +S+G G H +  
Sbjct: 34  VLYTTVNDE--IFVLGTNCCGCLGLG-DVQSTIEPRRLDCLSGKKIACLSYGSGPHVVLA 90

Query: 188 TEDGKLFGWGYSADGRIGN--LGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEG 245
           T +G++F WG++A  ++GN      L    + +N+                         
Sbjct: 91  TTEGEVFTWGHNAYSQLGNGTTNHGLVPCHISTNLSNK---------------------- 128

Query: 246 MEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGM 305
                              +V+++ACG  HSLVL  +G + + G N  GQ+G        
Sbjct: 129 -------------------QVIEVACGSYHSLVLTSDGEVFAWGYNNSGQVGSGSTANQP 169

Query: 306 FPVDI-----NFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQ--LGRMGP 358
            P  +     N   V+I+ G   S+A+ +      TG    +  WG+N + Q  LG  G 
Sbjct: 170 IPRRVTGCLQNKVVVNIACGQMCSMAVVD------TGE---VYVWGYNGNGQLGLGSSGN 220

Query: 359 DNVPLVVEGLEG 370
              P  V  L+G
Sbjct: 221 QPTPCRVSALQG 232


>gi|55725019|emb|CAH89377.1| hypothetical protein [Pongo abelii]
          Length = 451

 Score =  105 bits (263), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 61/176 (34%), Positives = 97/176 (55%), Gaps = 5/176 (2%)

Query: 66  VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAF 125
           V  V+ G YHSL +T++G V+AWG NN  Q+G G+  ++     P+RV G  Q  V    
Sbjct: 159 VIEVACGSYHSLVLTSDGEVFAWGYNNSGQVGSGSTVNQPI---PRRVTGCLQNKVVVTI 215

Query: 126 ASG-VVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHA 184
           A G +   A+ D G ++VWG +  GQLGLG    +   P RV AL G ++ +V+ G+ H 
Sbjct: 216 ACGQMCCMAVVDTGEVYVWGYNGNGQLGLGNSGNQP-TPCRVAALQGIRVQRVACGYAHT 274

Query: 185 LAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQK 240
           L  T++G+++ WG ++ G++G   K+ +S P    +++    +     ST   A K
Sbjct: 275 LVLTDEGQVYAWGANSYGQLGTGNKSNQSYPTPVTVEKDRIIEIAACHSTHTSAAK 330



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 70/289 (24%), Positives = 128/289 (44%), Gaps = 25/289 (8%)

Query: 77  LAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNV-CAAFASGVVSSAIG 135
           L  T N  ++  G N    LG G ++S     +P+R++ L+   + C ++ SG       
Sbjct: 64  LYTTVNDEIFVLGTNCCGCLGLGDVQSTI---EPRRLDSLNGKKIACLSYGSGPHIVLAT 120

Query: 136 DDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEA-LAGEKIVKVSFGWGHALAQTEDGKLF 194
            +G ++ WG +   QLG G      +VP  +   L+ +++++V+ G  H+L  T DG++F
Sbjct: 121 TEGEVFTWGHNAYSQLGNGT-TNHGLVPCHISTNLSNKQVIEVACGSYHSLVLTSDGEVF 179

Query: 195 GWGYSADGRIGNLGKALESSP------LDSNIDRSSESDQEISSSTIEKAQKLV------ 242
            WGY+  G++G+     +  P      L + +  +    Q    + ++  +  V      
Sbjct: 180 AWGYNNSGQVGSGSTVNQPIPRRVTGCLQNKVVVTIACGQMCCMAVVDTGEVYVWGYNGN 239

Query: 243 -SEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQ 301
              G+      P       ++G+ V  +ACG+ H+LVL   G + + G+N YGQLG   +
Sbjct: 240 GQLGLGNSGNQPTPCRVAALQGIRVQRVACGYAHTLVLTDEGQVYAWGANSYGQLGTGNK 299

Query: 302 DMGMFPVDINFHPVSISSGLGHSLAICEVRSSNVTGGARG-IVSWGWNR 349
               +P      PV++       +A C    ++      G +  WG  R
Sbjct: 300 SNQSYPT-----PVTVEKDRIIEIAACHSTHTSAAKTQGGHVYMWGQCR 343



 Score = 61.2 bits (147), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 64/252 (25%), Positives = 106/252 (42%), Gaps = 63/252 (25%)

Query: 129 VVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWG-HALAQ 187
           V+ + + D+  ++V G +  G LGLG D+   I P R+++L G+KI  +S+G G H +  
Sbjct: 63  VLYTTVNDE--IFVLGTNCCGCLGLG-DVQSTIEPRRLDSLNGKKIACLSYGSGPHIVLA 119

Query: 188 TEDGKLFGWGYSADGRIGN--LGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEG 245
           T +G++F WG++A  ++GN      L    + +N+                         
Sbjct: 120 TTEGEVFTWGHNAYSQLGNGTTNHGLVPCHISTNLSNK---------------------- 157

Query: 246 MEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGM 305
                              +V+++ACG  HSLVL  +G + + G N  GQ+G        
Sbjct: 158 -------------------QVIEVACGSYHSLVLTSDGEVFAWGYNNSGQVGSGSTVNQP 198

Query: 306 FPVDI-----NFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQ--LGRMGP 358
            P  +     N   V+I+ G    +A+ +     V         WG+N + Q  LG  G 
Sbjct: 199 IPRRVTGCLQNKVVVTIACGQMCCMAVVDTGEVYV---------WGYNGNGQLGLGNSGN 249

Query: 359 DNVPLVVEGLEG 370
              P  V  L+G
Sbjct: 250 QPTPCRVAALQG 261


>gi|410947368|ref|XP_003980421.1| PREDICTED: RCC1 and BTB domain-containing protein 2 isoform 1
           [Felis catus]
          Length = 551

 Score =  105 bits (263), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 59/151 (39%), Positives = 90/151 (59%), Gaps = 5/151 (3%)

Query: 66  VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAF 125
           VT V+ G YHSL +T++G V+AWG NN  Q+G G   S A    P+RV G  Q  V    
Sbjct: 154 VTEVACGSYHSLVLTSDGEVFAWGYNNSGQVGSG---STANQPIPRRVTGCLQNKVVVNI 210

Query: 126 ASG-VVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHA 184
           A G + S A+ + G ++VWG +  GQLGLG    +   P R+ AL G ++ +V+ G+ H 
Sbjct: 211 ACGQMCSMAVVNTGEVYVWGYNGNGQLGLGSSGNQP-TPCRISALQGIRVQRVACGYAHT 269

Query: 185 LAQTEDGKLFGWGYSADGRIGNLGKALESSP 215
           L  T++G+++ WG ++ G++G   K+ +S P
Sbjct: 270 LVLTDEGQVYAWGANSYGQLGTGNKSNQSYP 300



 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 71/289 (24%), Positives = 127/289 (43%), Gaps = 25/289 (8%)

Query: 77  LAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNV-CAAFASGVVSSAIG 135
           L  T N  ++  G N    LG G ++S     +P+R++ L    + C ++ SG       
Sbjct: 59  LYTTVNDEIFVLGTNCCGCLGLGDVQSTI---EPRRLDSLSGKKIACLSYGSGPHIVLAT 115

Query: 136 DDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEA-LAGEKIVKVSFGWGHALAQTEDGKLF 194
            +G ++ WG +   QLG G      ++P  +   L+ +++ +V+ G  H+L  T DG++F
Sbjct: 116 TEGEVFTWGHNAYSQLGNGT-TNHGLMPCHISTNLSNKQVTEVACGSYHSLVLTSDGEVF 174

Query: 195 GWGYSADGRIGNLGKALESSP------LDSNIDRSSESDQEISSSTIEKAQKLV------ 242
            WGY+  G++G+   A +  P      L + +  +    Q  S + +   +  V      
Sbjct: 175 AWGYNNSGQVGSGSTANQPIPRRVTGCLQNKVVVNIACGQMCSMAVVNTGEVYVWGYNGN 234

Query: 243 -SEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQ 301
              G+      P       ++G+ V  +ACG+ H+LVL   G + + G+N YGQLG   +
Sbjct: 235 GQLGLGSSGNQPTPCRISALQGIRVQRVACGYAHTLVLTDEGQVYAWGANSYGQLGTGNK 294

Query: 302 DMGMFPVDINFHPVSISSGLGHSLAICEVRSSNVTGGARG-IVSWGWNR 349
               +P      PV +       +A C +  ++      G +  WG  R
Sbjct: 295 SNQSYPA-----PVVVEKDRIIEIAACHLAHTSAAKTQGGHVYMWGQCR 338



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 69/268 (25%), Positives = 115/268 (42%), Gaps = 59/268 (22%)

Query: 111 KRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALA 170
           + ++ + Q  V  +  + V+ + + D+  ++V G +  G LGLG D+   I P R+++L+
Sbjct: 40  EELQLIRQACVFGSAGNEVLYTTVNDE--IFVLGTNCCGCLGLG-DVQSTIEPRRLDSLS 96

Query: 171 GEKIVKVSFGWG-HALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQE 229
           G+KI  +S+G G H +  T +G++F WG++A  ++GN                       
Sbjct: 97  GKKIACLSYGSGPHIVLATTEGEVFTWGHNAYSQLGN----------------------- 133

Query: 230 ISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCG 289
                          G      MP      L    +V ++ACG  HSLVL  +G + + G
Sbjct: 134 ---------------GTTNHGLMPCHISTNL-SNKQVTEVACGSYHSLVLTSDGEVFAWG 177

Query: 290 SNVYGQLGREKQDMGMFPVDI-----NFHPVSISSGLGHSLAICEVRSSNVTGGARGIVS 344
            N  GQ+G         P  +     N   V+I+ G   S+A+       V  G   +  
Sbjct: 178 YNNSGQVGSGSTANQPIPRRVTGCLQNKVVVNIACGQMCSMAV-------VNTGE--VYV 228

Query: 345 WGWNRSSQ--LGRMGPDNVPLVVEGLEG 370
           WG+N + Q  LG  G    P  +  L+G
Sbjct: 229 WGYNGNGQLGLGSSGNQPTPCRISALQG 256


>gi|410947370|ref|XP_003980422.1| PREDICTED: RCC1 and BTB domain-containing protein 2 isoform 2
           [Felis catus]
          Length = 527

 Score =  105 bits (263), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 59/151 (39%), Positives = 90/151 (59%), Gaps = 5/151 (3%)

Query: 66  VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAF 125
           VT V+ G YHSL +T++G V+AWG NN  Q+G G   S A    P+RV G  Q  V    
Sbjct: 130 VTEVACGSYHSLVLTSDGEVFAWGYNNSGQVGSG---STANQPIPRRVTGCLQNKVVVNI 186

Query: 126 ASG-VVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHA 184
           A G + S A+ + G ++VWG +  GQLGLG    +   P R+ AL G ++ +V+ G+ H 
Sbjct: 187 ACGQMCSMAVVNTGEVYVWGYNGNGQLGLGSSGNQP-TPCRISALQGIRVQRVACGYAHT 245

Query: 185 LAQTEDGKLFGWGYSADGRIGNLGKALESSP 215
           L  T++G+++ WG ++ G++G   K+ +S P
Sbjct: 246 LVLTDEGQVYAWGANSYGQLGTGNKSNQSYP 276



 Score = 83.6 bits (205), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 71/289 (24%), Positives = 127/289 (43%), Gaps = 25/289 (8%)

Query: 77  LAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNV-CAAFASGVVSSAIG 135
           L  T N  ++  G N    LG G ++S     +P+R++ L    + C ++ SG       
Sbjct: 35  LYTTVNDEIFVLGTNCCGCLGLGDVQSTI---EPRRLDSLSGKKIACLSYGSGPHIVLAT 91

Query: 136 DDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEA-LAGEKIVKVSFGWGHALAQTEDGKLF 194
            +G ++ WG +   QLG G      ++P  +   L+ +++ +V+ G  H+L  T DG++F
Sbjct: 92  TEGEVFTWGHNAYSQLGNGT-TNHGLMPCHISTNLSNKQVTEVACGSYHSLVLTSDGEVF 150

Query: 195 GWGYSADGRIGNLGKALESSP------LDSNIDRSSESDQEISSSTIEKAQKLV------ 242
            WGY+  G++G+   A +  P      L + +  +    Q  S + +   +  V      
Sbjct: 151 AWGYNNSGQVGSGSTANQPIPRRVTGCLQNKVVVNIACGQMCSMAVVNTGEVYVWGYNGN 210

Query: 243 -SEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQ 301
              G+      P       ++G+ V  +ACG+ H+LVL   G + + G+N YGQLG   +
Sbjct: 211 GQLGLGSSGNQPTPCRISALQGIRVQRVACGYAHTLVLTDEGQVYAWGANSYGQLGTGNK 270

Query: 302 DMGMFPVDINFHPVSISSGLGHSLAICEVRSSNVTGGARG-IVSWGWNR 349
               +P      PV +       +A C +  ++      G +  WG  R
Sbjct: 271 SNQSYPA-----PVVVEKDRIIEIAACHLAHTSAAKTQGGHVYMWGQCR 314



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 67/250 (26%), Positives = 107/250 (42%), Gaps = 59/250 (23%)

Query: 129 VVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWG-HALAQ 187
           V+ + + D+  ++V G +  G LGLG D+   I P R+++L+G+KI  +S+G G H +  
Sbjct: 34  VLYTTVNDE--IFVLGTNCCGCLGLG-DVQSTIEPRRLDSLSGKKIACLSYGSGPHIVLA 90

Query: 188 TEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGME 247
           T +G++F WG++A  ++GN                                      G  
Sbjct: 91  TTEGEVFTWGHNAYSQLGN--------------------------------------GTT 112

Query: 248 KEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFP 307
               MP      L    +V ++ACG  HSLVL  +G + + G N  GQ+G         P
Sbjct: 113 NHGLMPCHISTNL-SNKQVTEVACGSYHSLVLTSDGEVFAWGYNNSGQVGSGSTANQPIP 171

Query: 308 VDI-----NFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQ--LGRMGPDN 360
             +     N   V+I+ G   S+A+       V  G   +  WG+N + Q  LG  G   
Sbjct: 172 RRVTGCLQNKVVVNIACGQMCSMAV-------VNTGE--VYVWGYNGNGQLGLGSSGNQP 222

Query: 361 VPLVVEGLEG 370
            P  +  L+G
Sbjct: 223 TPCRISALQG 232


>gi|408500681|ref|YP_006864600.1| RCC1 domain-containing protein [Bifidobacterium asteroides PRL2011]
 gi|408465505|gb|AFU71034.1| RCC1 domain-containing protein [Bifidobacterium asteroides PRL2011]
          Length = 1194

 Score =  105 bits (263), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 108/376 (28%), Positives = 156/376 (41%), Gaps = 59/376 (15%)

Query: 32   FGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVT--SVSAGHYHSLAVTNNGAVWAWG 89
             GDG+      P  +      AY     P LP D T   +SAG YHSLA+ ++G  +AWG
Sbjct: 700  LGDGTDTRQTTPVMVNKPDRKAY-----PDLPEDFTYVQISAGGYHSLALGSDGNAYAWG 754

Query: 90   RNNEVQLGRGALESRATW---NDPKR--VEGLDQVNVCAAFASGVVSS-AIGDDGSLWVW 143
             N+  +LG G    R T    N P R     L +       ++G  SS A+G DG+ + W
Sbjct: 755  NNSNGRLGDGTTTERHTPVRVNKPDRNTYPDLPKDFTYVQISAGNDSSLAVGSDGNAYAW 814

Query: 144  GKSKRGQLGLGKDITEAIVPSRVEALAGE---------KIVKVSFGWGHALAQTEDGKLF 194
            G +  G+LG G   TE   P RV                 V++S GW H+LA   DG  +
Sbjct: 815  GVNGSGRLGDGT-TTERHTPVRVNKPDRNTYPDLPEDFTYVQISAGWEHSLAVGSDGNAY 873

Query: 195  GWGYSADGRIGNLGKALESSPLDSN-IDRSSESDQEISSSTIEK----AQKL-------- 241
             WG +++GR+G+       +P+  N  DR +  D     + ++     A  L        
Sbjct: 874  AWGNNSNGRLGDGTTTERHTPVRVNKPDRKAYPDLPEDFTYVQASAGGAHSLALGSDGNA 933

Query: 242  ----------VSEGMEKEKYMPIIWE-------PFLVEGVEVVDIACGFDHSLVLGRNGV 284
                      + +G   E++ P+          P L E    V ++ G DHSL +G +  
Sbjct: 934  YALGWNGSGQIGDGTTTERHTPVRVNKPDRKAYPDLPEDFTYVQVSGGADHSLAVGSDDK 993

Query: 285  LLSCGSNVYGQLGREK----QDMGMFPVDIN--FHPVSISSGLGHSLAICEVRSSNVTGG 338
            + + G N YGQLG        D+   PV +    +P   S GL  +        S   G 
Sbjct: 994  VWAWGCNWYGQLGNNTISGYSDVNPVPVRVRDPANPTDKSKGLKATQVSGGWHLSLALGS 1053

Query: 339  ARGIVSWGWNRSSQLG 354
                 +WG N S QLG
Sbjct: 1054 DGNAWAWGANDSGQLG 1069



 Score = 82.8 bits (203), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 85/307 (27%), Positives = 123/307 (40%), Gaps = 69/307 (22%)

Query: 76  SLAVTNNGAVWAWGRNNEVQLGRGALESRATW---NDPKRVEGLD---QVNVCAAFASGV 129
           SLAV ++G  +AWG N + QLG G    + T    N P R    D           A G 
Sbjct: 680 SLAVGSDGNAYAWGNNGDGQLGDGTDTRQTTPVMVNKPDRKAYPDLPEDFTYVQISAGGY 739

Query: 130 VSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRV---------EALAGEKIVKVSFG 180
            S A+G DG+ + WG +  G+LG G   TE   P RV         +       V++S G
Sbjct: 740 HSLALGSDGNAYAWGNNSNGRLGDGT-TTERHTPVRVNKPDRNTYPDLPKDFTYVQISAG 798

Query: 181 WGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQK 240
              +LA   DG  + WG +  GR+G+                          +T E+   
Sbjct: 799 NDSSLAVGSDGNAYAWGVNGSGRLGD-------------------------GTTTERHTP 833

Query: 241 LVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGR-- 298
           +     ++  Y      P L E    V I+ G++HSL +G +G   + G+N  G+LG   
Sbjct: 834 VRVNKPDRNTY------PDLPEDFTYVQISAGWEHSLAVGSDGNAYAWGNNSNGRLGDGT 887

Query: 299 ----------EKQDMGMFP-VDINFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGW 347
                      K D   +P +  +F  V  S+G  HSLA+         G      + GW
Sbjct: 888 TTERHTPVRVNKPDRKAYPDLPEDFTYVQASAGGAHSLAL---------GSDGNAYALGW 938

Query: 348 NRSSQLG 354
           N S Q+G
Sbjct: 939 NGSGQIG 945



 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 83/302 (27%), Positives = 126/302 (41%), Gaps = 58/302 (19%)

Query: 32   FGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVT--SVSAGHYHSLAVTNNGAVWAWG 89
             GDG+      P  +     + Y     P LP D T   +SAG  HSLAV ++G  +AWG
Sbjct: 822  LGDGTTTERHTPVRVNKPDRNTY-----PDLPEDFTYVQISAGWEHSLAVGSDGNAYAWG 876

Query: 90   RNNEVQLGRGALESRATW---NDPKRVEGLD---QVNVCAAFASGVVSSAIGDDGSLWVW 143
             N+  +LG G    R T    N P R    D         A A G  S A+G DG+ +  
Sbjct: 877  NNSNGRLGDGTTTERHTPVRVNKPDRKAYPDLPEDFTYVQASAGGAHSLALGSDGNAYAL 936

Query: 144  GKSKRGQLGLGKDITEAIVPSRVEALAGE---------KIVKVSFGWGHALAQTEDGKLF 194
            G +  GQ+G G   TE   P RV     +           V+VS G  H+LA   D K++
Sbjct: 937  GWNGSGQIGDGT-TTERHTPVRVNKPDRKAYPDLPEDFTYVQVSGGADHSLAVGSDDKVW 995

Query: 195  GWGYSADGRIGN--LGKALESSPLDSNI-DRSSESDQEISSSTIEKAQKLVSEGMEKEKY 251
             WG +  G++GN  +    + +P+   + D ++ +D+                       
Sbjct: 996  AWGCNWYGQLGNNTISGYSDVNPVPVRVRDPANPTDKS---------------------- 1033

Query: 252  MPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDIN 311
                      +G++   ++ G+  SL LG +G   + G+N  GQLG    +    PV + 
Sbjct: 1034 ----------KGLKATQVSGGWHLSLALGSDGNAWAWGANDSGQLGDGTGNTKSAPVPVV 1083

Query: 312  FH 313
            F+
Sbjct: 1084 FN 1085



 Score = 65.5 bits (158), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 70/219 (31%), Positives = 97/219 (44%), Gaps = 41/219 (18%)

Query: 29   VVSFGDGSQGALGLPTSLTGVGGDAYEPTRV--------PGLPSDVTSV--SAGHYHSLA 78
              ++G+ S G LG      G   + + P RV        P LP D T V  SAG  HSLA
Sbjct: 872  AYAWGNNSNGRLG-----DGTTTERHTPVRVNKPDRKAYPDLPEDFTYVQASAGGAHSLA 926

Query: 79   VTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQ---VNVCAAFASGVVSS--- 132
            + ++G  +A G N   Q+G G    R T   P RV   D+    ++   F    VS    
Sbjct: 927  LGSDGNAYALGWNGSGQIGDGTTTERHT---PVRVNKPDRKAYPDLPEDFTYVQVSGGAD 983

Query: 133  ---AIGDDGSLWVWGKSKRGQLGLG-----KDITEAIVPSRVEALA-------GEKIVKV 177
               A+G D  +W WG +  GQLG        D+    VP RV   A       G K  +V
Sbjct: 984  HSLAVGSDDKVWAWGCNWYGQLGNNTISGYSDVNP--VPVRVRDPANPTDKSKGLKATQV 1041

Query: 178  SFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPL 216
            S GW  +LA   DG  + WG +  G++G+     +S+P+
Sbjct: 1042 SGGWHLSLALGSDGNAWAWGANDSGQLGDGTGNTKSAPV 1080


>gi|282395057|ref|NP_598844.3| RCC1 and BTB domain-containing protein 2 [Mus musculus]
 gi|282396060|ref|NP_001164165.1| RCC1 and BTB domain-containing protein 2 [Mus musculus]
 gi|81880241|sp|Q99LJ7.1|RCBT2_MOUSE RecName: Full=RCC1 and BTB domain-containing protein 2; AltName:
           Full=Chromosome condensation 1-like; AltName:
           Full=Regulator of chromosome condensation and BTB
           domain-containing protein 2
 gi|13096854|gb|AAH03224.1| Regulator of chromosome condensation (RCC1) and BTB (POZ) domain
           containing protein 2 [Mus musculus]
 gi|26327151|dbj|BAC27319.1| unnamed protein product [Mus musculus]
 gi|148703914|gb|EDL35861.1| regulator of chromosome condensation (RCC1) and BTB (POZ) domain
           containing protein 2, isoform CRA_a [Mus musculus]
 gi|339779805|gb|AEK06433.1| RC/BTB2 [Mus musculus]
 gi|339779807|gb|AEK06434.1| RC/BTB2 [Mus musculus]
          Length = 551

 Score =  105 bits (263), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 60/151 (39%), Positives = 89/151 (58%), Gaps = 5/151 (3%)

Query: 66  VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAF 125
           V  V+ G YHSL +T++G V+AWG NN  Q+G G   S A    P+RV G  Q  V    
Sbjct: 154 VIEVACGSYHSLVLTSDGEVFAWGYNNSGQVGSG---STANQPIPRRVTGCLQNKVVMNI 210

Query: 126 ASG-VVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHA 184
           A G + S A+ D G ++VWG +  GQLGLG    +   P RV AL G ++ +V+ G+ H 
Sbjct: 211 ACGQMCSMAVVDTGEVYVWGYNGNGQLGLGSSGNQP-TPCRVAALQGIRVQRVACGYAHT 269

Query: 185 LAQTEDGKLFGWGYSADGRIGNLGKALESSP 215
           L  T++G+++ WG ++ G++G   K+ +S P
Sbjct: 270 LVLTDEGQIYAWGANSYGQLGTGNKSNQSYP 300



 Score = 85.9 bits (211), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 72/289 (24%), Positives = 128/289 (44%), Gaps = 25/289 (8%)

Query: 77  LAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCA-AFASGVVSSAIG 135
           L  T N  ++  G N    LG G ++S     +P+R++ L    + + ++ SG       
Sbjct: 59  LYTTVNDEIFVLGTNCSGCLGVGDIQSTI---EPRRLDSLTGKKIASLSYGSGPHIVLAT 115

Query: 136 DDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEA-LAGEKIVKVSFGWGHALAQTEDGKLF 194
            DG ++ WG +   QLG G      +VP  +   L+ +++++V+ G  H+L  T DG++F
Sbjct: 116 TDGEVFTWGHNAYSQLGNGT-TNHGLVPCHISTNLSNKQVIEVACGSYHSLVLTSDGEVF 174

Query: 195 GWGYSADGRIGNLGKALESSP------LDSNIDRSSESDQEISSSTIEKAQKLV------ 242
            WGY+  G++G+   A +  P      L + +  +    Q  S + ++  +  V      
Sbjct: 175 AWGYNNSGQVGSGSTANQPIPRRVTGCLQNKVVMNIACGQMCSMAVVDTGEVYVWGYNGN 234

Query: 243 -SEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQ 301
              G+      P       ++G+ V  +ACG+ H+LVL   G + + G+N YGQLG   +
Sbjct: 235 GQLGLGSSGNQPTPCRVAALQGIRVQRVACGYAHTLVLTDEGQIYAWGANSYGQLGTGNK 294

Query: 302 DMGMFPVDINFHPVSISSGLGHSLAICEVRSSNVTGGARG-IVSWGWNR 349
               +P      PV +       +A C    ++      G +  WG  R
Sbjct: 295 SNQSYPT-----PVVVEKDRIIEIAACHSAHTSAAKTQGGHVYMWGQCR 338



 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 70/270 (25%), Positives = 114/270 (42%), Gaps = 66/270 (24%)

Query: 114 EGLDQVNVCAAFASG---VVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALA 170
           E L  +     F S    V+ + + D+  ++V G +  G LG+G DI   I P R+++L 
Sbjct: 40  EELQLIRQACVFGSAGNEVLYTTVNDE--IFVLGTNCSGCLGVG-DIQSTIEPRRLDSLT 96

Query: 171 GEKIVKVSFGWG-HALAQTEDGKLFGWGYSADGRIGN--LGKALESSPLDSNIDRSSESD 227
           G+KI  +S+G G H +  T DG++F WG++A  ++GN      L    + +N+       
Sbjct: 97  GKKIASLSYGSGPHIVLATTDGEVFTWGHNAYSQLGNGTTNHGLVPCHISTNLSNK---- 152

Query: 228 QEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLS 287
                                                +V+++ACG  HSLVL  +G + +
Sbjct: 153 -------------------------------------QVIEVACGSYHSLVLTSDGEVFA 175

Query: 288 CGSNVYGQLGREKQDMGMFPVDI-----NFHPVSISSGLGHSLAICEVRSSNVTGGARGI 342
            G N  GQ+G         P  +     N   ++I+ G   S+A+ +      TG    +
Sbjct: 176 WGYNNSGQVGSGSTANQPIPRRVTGCLQNKVVMNIACGQMCSMAVVD------TGE---V 226

Query: 343 VSWGWNRSSQ--LGRMGPDNVPLVVEGLEG 370
             WG+N + Q  LG  G    P  V  L+G
Sbjct: 227 YVWGYNGNGQLGLGSSGNQPTPCRVAALQG 256


>gi|444911573|ref|ZP_21231747.1| BNR repeat domain protein [Cystobacter fuscus DSM 2262]
 gi|444717927|gb|ELW58746.1| BNR repeat domain protein [Cystobacter fuscus DSM 2262]
          Length = 708

 Score =  105 bits (263), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 99/288 (34%), Positives = 143/288 (49%), Gaps = 26/288 (9%)

Query: 56  PTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEG 115
           P RV GL S V +V+AG  HSLAV ++G VWAWG N+  QLG G+ ++RA   +P RV G
Sbjct: 53  PVRVLGL-SGVVTVAAGGGHSLAVHSDGTVWAWGNNSSGQLGDGSFDNRA---EPVRVRG 108

Query: 116 LDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIV 175
           L    V A  A G  S A+  DG++W WG +  GQLG G     A  P RV   +G   V
Sbjct: 109 LS--GVVAVAAGGYHSLAVSADGTVWAWGNNSSGQLGDGSFDNRA-EPVRVRGSSGVVAV 165

Query: 176 KVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLD-------SNIDRSSESDQ 228
                  H+LA   DG L+ WG +  G++GN G+   S P+          +   +    
Sbjct: 166 AAGG--AHSLAVRSDGILWAWGDNLYGQLGNRGEFNSSEPVQVLRVTGGVTVSAGANHSL 223

Query: 229 EISSSTIEKAQKLVSEG-MEKEKYMPIIWEPFLVEGVE-VVDIACGFDHSLVLGRNGVLL 286
            +S+     A    S G +   +  P++  P  V  V   V +A G +HSL +  +G + 
Sbjct: 224 AVSADGTVWAWGDNSHGQLGIARTTPLLSIPGRVPEVRGSVAMAAGDNHSLAVRDDGTVW 283

Query: 287 SCGSNVYGQLGR----EKQDMGMFPVDINFHPV-SISSGLGHSLAICE 329
           + GSN +GQLG     +  + G  P       V ++++G  HSLA+ +
Sbjct: 284 AWGSNGHGQLGNGFMVDNSEPGRVP---GLEGVGAVAAGSNHSLAVRD 328



 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 116/358 (32%), Positives = 169/358 (47%), Gaps = 44/358 (12%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAW 88
           V ++G+ S G LG      G   +  EP RV GL S V +V+AG YHSLAV+ +G VWAW
Sbjct: 81  VWAWGNNSSGQLG-----DGSFDNRAEPVRVRGL-SGVVAVAAGGYHSLAVSADGTVWAW 134

Query: 89  GRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKR 148
           G N+  QLG G+ ++RA   +P RV       V A  A G  S A+  DG LW WG +  
Sbjct: 135 GNNSSGQLGDGSFDNRA---EPVRVR--GSSGVVAVAAGGAHSLAVRSDGILWAWGDNLY 189

Query: 149 GQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLG 208
           GQLG   +   +  P +V  + G   V VS G  H+LA + DG ++ WG ++ G++G   
Sbjct: 190 GQLGNRGEFNSS-EPVQVLRVTGG--VTVSAGANHSLAVSADGTVWAWGDNSHGQLG--- 243

Query: 209 KALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSE------------GMEKEKYMPIIW 256
               ++PL S   R  E    ++ +  +     V +            G     +M    
Sbjct: 244 -IARTTPLLSIPGRVPEVRGSVAMAAGDNHSLAVRDDGTVWAWGSNGHGQLGNGFMVDNS 302

Query: 257 EPFLVEGVEVVD-IACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPV--DINFH 313
           EP  V G+E V  +A G +HSL +  +G + + GSNV GQ G         P        
Sbjct: 303 EPGRVPGLEGVGAVAAGSNHSLAVRDDGTVWAWGSNVEGQRGDGTTGQLSAPTRVPGVSG 362

Query: 314 PVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPDN--VPLVVEGLE 369
            V +++ + HSLA+    S+          +WG N   +LG     N   P+ V+GL+
Sbjct: 363 VVGVAANVFHSLAVSADGSA---------WAWGHNSHGELGDGSTRNSPAPVRVDGLK 411



 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 114/354 (32%), Positives = 165/354 (46%), Gaps = 32/354 (9%)

Query: 23  SASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNN 82
           SA G+A  ++G  S G LG  ++      ++  P RV GL  +V +V+AG  HSLA+  +
Sbjct: 377 SADGSAW-AWGHNSHGELGDGSTR-----NSPAPVRVDGL-KEVVAVAAGSSHSLALLAD 429

Query: 83  GAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWV 142
           G V AWG N   QLG G   +RA+ + P +V GL  V   AA +S   S A+  DG++W 
Sbjct: 430 GTVLAWGDNTFGQLGDG---TRASHSVPAQVRGLRGVVAVAAGSS--HSLALLADGTVWT 484

Query: 143 WGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADG 202
           WG +  GQLG G   T    P  V+ L  E +V V+ G  H+LA   DG  + WG +  G
Sbjct: 485 WGYNLNGQLGDGT-TTYRYEPVAVKGL--EGVVAVAAGGNHSLAVRSDGTAWAWGENVKG 541

Query: 203 RIGNLGKALESSPLDSNIDRSSESDQE-----ISSSTIEKAQKLVSEGMEKEKYMPIIWE 257
           ++G+       +P++      + +  +     + S     A    S G   +        
Sbjct: 542 QLGDGTLTSRPAPVEVKAAAKAVAAAQGLSLAVGSDGFPWAWGNNSSGQLGDGSTTSRPM 601

Query: 258 PFLVEGV-EVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDIN--FHP 314
           P  V+G  EVV +A G  HSL L   G + + G N  GQLG    D  + P  +      
Sbjct: 602 PMRVQGAGEVVAVAAGNGHSLALSPEGGVWAWGQNARGQLGEGTLDRRLAPTRVQGLSGV 661

Query: 315 VSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPDNVPLVVEGL 368
           V++++G   SLA+ +  S         + SWG N   QLG   P     VV  L
Sbjct: 662 VAVAAGGAFSLAVRDDGS---------VWSWGDNAFGQLGNAPPVYATFVVRSL 706



 Score = 82.8 bits (203), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 94/290 (32%), Positives = 129/290 (44%), Gaps = 65/290 (22%)

Query: 69  VSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASG 128
           ++ G  HSL+V  +G VWA G N+  QLG G    R     P RV GL  V   A  A G
Sbjct: 15  IATGGSHSLSVHQDGTVWAVGGNSVGQLGDGTTSLRRV---PVRVLGLSGVVTVA--AGG 69

Query: 129 VVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQT 188
             S A+  DG++W WG +  GQLG G     A  P RV  L+G  +V V+ G  H+LA +
Sbjct: 70  GHSLAVHSDGTVWAWGNNSSGQLGDGSFDNRA-EPVRVRGLSG--VVAVAAGGYHSLAVS 126

Query: 189 EDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEK 248
            DG ++ WG ++ G++G           D + D  +                        
Sbjct: 127 ADGTVWAWGNNSSGQLG-----------DGSFDNRA------------------------ 151

Query: 249 EKYMPIIWEPFLVE-GVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFP 307
                   EP  V     VV +A G  HSL +  +G+L + G N+YGQLG   +     P
Sbjct: 152 --------EPVRVRGSSGVVAVAAGGAHSLAVRSDGILWAWGDNLYGQLGNRGEFNSSEP 203

Query: 308 VDI--NFHPVSISSGLGHSLAICEVRSSNVTGGARGIV-SWGWNRSSQLG 354
           V +      V++S+G  HSLA+           A G V +WG N   QLG
Sbjct: 204 VQVLRVTGGVTVSAGANHSLAVS----------ADGTVWAWGDNSHGQLG 243



 Score = 43.1 bits (100), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 36/106 (33%), Positives = 52/106 (49%), Gaps = 13/106 (12%)

Query: 269 IACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFHP--VSISSGLGHSLA 326
           IA G  HSL + ++G + + G N  GQLG     +   PV +      V++++G GHSLA
Sbjct: 15  IATGGSHSLSVHQDGTVWAVGGNSVGQLGDGTTSLRRVPVRVLGLSGVVTVAAGGGHSLA 74

Query: 327 ICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPDNV--PLVVEGLEG 370
           +    +         + +WG N S QLG    DN   P+ V GL G
Sbjct: 75  VHSDGT---------VWAWGNNSSGQLGDGSFDNRAEPVRVRGLSG 111


>gi|444917133|ref|ZP_21237237.1| BNR repeat domain protein [Cystobacter fuscus DSM 2262]
 gi|444711259|gb|ELW52206.1| BNR repeat domain protein [Cystobacter fuscus DSM 2262]
          Length = 1081

 Score =  105 bits (263), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 102/329 (31%), Positives = 146/329 (44%), Gaps = 68/329 (20%)

Query: 28   AVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWA 87
            +V SFG  S+G LG   S T        P  + G P  + +V+AG   SLA++ +G VWA
Sbjct: 772  SVFSFGSNSRGQLGYEGSAT-----QTSPRWLTG-PECIEAVAAGALFSLALSCDGGVWA 825

Query: 88   WGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSK 147
            WG N   QLG GA+ +R     P RV GL  V   AA +   +  A+  DG++W WG + 
Sbjct: 826  WGDNGSGQLGDGAVTARTA---PARVPGLAHVVAIAAGSDHAL--AVRADGTVWAWGANG 880

Query: 148  RGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNL 207
             GQLG G   + A VP +V+ L    +V V+ G GH+LA   DG ++ WG +  G++G  
Sbjct: 881  SGQLGDGTTTSRA-VPMQVKELV--DVVAVAGGSGHSLAVRADGTVWAWGANGSGQLG-- 935

Query: 208  GKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVV 267
                                                +G    + +P+    F+     V 
Sbjct: 936  ------------------------------------DGTTTSRTLPV----FVSTLSGVQ 955

Query: 268  DIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDIN-FHPVS-ISSGLGHSL 325
             IA G  HSL L   GV+ + G+N  GQLG         PV ++    V  + +G   SL
Sbjct: 956  AIASGAQHSLALAEGGVVWAWGANGSGQLGDGTTTSRTRPVQVSGLSGVQGLVAGASFSL 1015

Query: 326  AICEVRSSNVTGGARGIVSWGWNRSSQLG 354
            A+   +          + SWG N + QLG
Sbjct: 1016 ALTPGK----------VWSWGNNSAGQLG 1034



 Score =  101 bits (252), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 108/356 (30%), Positives = 161/356 (45%), Gaps = 70/356 (19%)

Query: 19   IFMRSASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLA 78
             F   A GT V ++GD S G LG      G    +  P +  G P  V  +++G  H LA
Sbjct: 714  TFALRADGT-VWAWGDNSLGQLG-----NGATSASPVPVQAVGYPRTV-PLASGAQHVLA 766

Query: 79   VTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDG 138
            V+++G+V+++G N+  QLG    E  AT   P+ + G + +   AA A  + S A+  DG
Sbjct: 767  VSSDGSVFSFGSNSRGQLG---YEGSATQTSPRWLTGPECIEAVAAGA--LFSLALSCDG 821

Query: 139  SLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGY 198
             +W WG +  GQLG G  +T    P+RV  LA   +V ++ G  HALA   DG ++ WG 
Sbjct: 822  GVWAWGDNGSGQLGDGA-VTARTAPARVPGLA--HVVAIAAGSDHALAVRADGTVWAWGA 878

Query: 199  SADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEP 258
            +  G++G                                      +G    + +P+    
Sbjct: 879  NGSGQLG--------------------------------------DGTTTSRAVPMQ--- 897

Query: 259  FLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFHP--VS 316
             + E V+VV +A G  HSL +  +G + + G+N  GQLG         PV ++      +
Sbjct: 898  -VKELVDVVAVAGGSGHSLAVRADGTVWAWGANGSGQLGDGTTTSRTLPVFVSTLSGVQA 956

Query: 317  ISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQL--GRMGPDNVPLVVEGLEG 370
            I+SG  HSLA+ E       GG   + +WG N S QL  G       P+ V GL G
Sbjct: 957  IASGAQHSLALAE-------GGV--VWAWGANGSGQLGDGTTTSRTRPVQVSGLSG 1003



 Score =  101 bits (251), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 106/364 (29%), Positives = 166/364 (45%), Gaps = 47/364 (12%)

Query: 28  AVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWA 87
           AV ++G+ + G LG  +S +        P +V GL ++V +++AG +HSLA+  +G VWA
Sbjct: 166 AVWAWGNNTTGQLGDGSSTS-----RSTPAKVAGL-TEVVAIAAGDFHSLALKRDGTVWA 219

Query: 88  WGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFAS-GVVSSAIGDDGSLWVWGKS 146
           WG N   QLG G L+SR+T   P RV GL  +   A   S  V +S+    G +W WG +
Sbjct: 220 WGGNYSGQLGDGTLDSRST---PVRVSGLTGIVALAGGGSHSVAASSTTLGGKVWAWGDN 276

Query: 147 KRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGN 206
             GQLG G D++  ++P  V  L   ++V ++ G  H+LA   D  ++ WG +A  +   
Sbjct: 277 TYGQLGNGGDVSS-LLPLEVPGL--TQVVALASGTSHSLALRGDDSVWAWGDNAQAQTAQ 333

Query: 207 LGKALESSPLD-SNIDRSSESDQEISSSTIEKAQKL-----------VSEGMEKEKYMPI 254
            G +++  P+  S +  +       + S + +   +           +  G    + +P 
Sbjct: 334 TGTSVQRVPVRVSGVSDAQALACGNAFSLVGRGDNVTLGWGANGSGQLGNGSSSVRALPG 393

Query: 255 IWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFHP 314
              P L  G     +A G  H  +   +G + + G N YGQLG         PV ++   
Sbjct: 394 R-VPSLTAGAS---LAAGDHHVFLRQADGSVWAWGDNTYGQLGDGTLVSRPAPVRLSSTL 449

Query: 315 VSI---SSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLG------RMGPDNVPLVV 365
            S+   S+   HSLA+   RS         + +WG N   QLG      R  P  VP V 
Sbjct: 450 TSVRALSASSYHSLAL---RSDGT------VWAWGDNAYGQLGDTSGGRRPSPAQVPGVA 500

Query: 366 EGLE 369
              E
Sbjct: 501 GATE 504



 Score = 98.2 bits (243), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 101/360 (28%), Positives = 166/360 (46%), Gaps = 48/360 (13%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAW 88
           V ++G  +QG LG  ++L         PT+V GL + VT+V+AG+ HS+A+   G VW W
Sbjct: 69  VWAWGANAQGQLGEGSTL-----QHSTPTQVVGL-TGVTAVAAGNTHSMALREEGTVWTW 122

Query: 89  GRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKR 148
           G N + QLG G  +       P +V GL  V    A A+G + S    +G++W WG +  
Sbjct: 123 GTNTDGQLGDGVSQRSV----PAQVAGLTGVT---AIAAGNLHSLALINGAVWAWGNNTT 175

Query: 149 GQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLG 208
           GQLG G   + +  P++V  L   ++V ++ G  H+LA   DG ++ WG +  G++G+  
Sbjct: 176 GQLGDGSSTSRS-TPAKVAGL--TEVVAIAAGDFHSLALKRDGTVWAWGGNYSGQLGDGT 232

Query: 209 KALESSP-----LDSNIDRSSESDQEISSSTIEKAQKL----------VSEGMEKEKYMP 253
               S+P     L   +  +      +++S+     K+          +  G +    +P
Sbjct: 233 LDSRSTPVRVSGLTGIVALAGGGSHSVAASSTTLGGKVWAWGDNTYGQLGNGGDVSSLLP 292

Query: 254 IIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFH 313
           +   P L    +VV +A G  HSL L  +  + + G N   Q  +    +   PV ++  
Sbjct: 293 LE-VPGL---TQVVALASGTSHSLALRGDDSVWAWGDNAQAQTAQTGTSVQRVPVRVSGV 348

Query: 314 PVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLG------RMGPDNVPLVVEG 367
             + +   G++ ++   R  NVT      + WG N S QLG      R  P  VP +  G
Sbjct: 349 SDAQALACGNAFSLVG-RGDNVT------LGWGANGSGQLGNGSSSVRALPGRVPSLTAG 401



 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 103/378 (27%), Positives = 164/378 (43%), Gaps = 81/378 (21%)

Query: 56  PTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRG---------------- 99
           P RV GLP+ + ++ AG  +S+A+  +G+VW WG N+  QLG G                
Sbjct: 594 PGRVSGLPAGIQAIVAGPSYSVALGADGSVWTWGENSNGQLGDGTTTARPVPARVSLPAT 653

Query: 100 --ALESRAT-----------W------------------NDPKRVEGLDQVNVCAAFASG 128
             AL +R +           W                  + P+RV    +V     FASG
Sbjct: 654 LVALSTRGSHTVALDTTGMLWAWGRNVSGQLGNGTLVSESTPRRVPSFARVQ---GFASG 710

Query: 129 VVSS-AIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQ 187
           + ++ A+  DG++W WG +  GQLG G     +  P  V+A+   + V ++ G  H LA 
Sbjct: 711 LRTTFALRADGTVWAWGDNSLGQLGNGA---TSASPVPVQAVGYPRTVPLASGAQHVLAV 767

Query: 188 TEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEK---------- 237
           + DG +F +G ++ G++G  G A ++SP         E  + +++  +            
Sbjct: 768 SSDGSVFSFGSNSRGQLGYEGSATQTSP---RWLTGPECIEAVAAGALFSLALSCDGGVW 824

Query: 238 AQKLVSEGMEKEKYMPIIWEPFLVEGV-EVVDIACGFDHSLVLGRNGVLLSCGSNVYGQL 296
           A      G   +  +     P  V G+  VV IA G DH+L +  +G + + G+N  GQL
Sbjct: 825 AWGDNGSGQLGDGAVTARTAPARVPGLAHVVAIAAGSDHALAVRADGTVWAWGANGSGQL 884

Query: 297 GREKQDMGMFPVDIN--FHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQL- 353
           G         P+ +      V+++ G GHSLA   VR+         + +WG N S QL 
Sbjct: 885 GDGTTTSRAVPMQVKELVDVVAVAGGSGHSLA---VRADGT------VWAWGANGSGQLG 935

Query: 354 -GRMGPDNVPLVVEGLEG 370
            G      +P+ V  L G
Sbjct: 936 DGTTTSRTLPVFVSTLSG 953



 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 115/399 (28%), Positives = 164/399 (41%), Gaps = 85/399 (21%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAW 88
           V ++GD + G LG  +     GG    P +VPG+ +  T ++AG YHSLA+ ++G VW W
Sbjct: 471 VWAWGDNAYGQLGDTS-----GGRRPSPAQVPGV-AGATEIAAGTYHSLALRSDGTVWTW 524

Query: 89  GRNNEVQLGRG-----------------------------ALESRA---TWND------- 109
           G N+  QLG G                             AL+S      W D       
Sbjct: 525 GDNSYGQLGAGATPRGPRAPAVVPGLAVITHVAAGLFHSLALDSSGQVWAWGDNVYGQLG 584

Query: 110 ---------PKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEA 160
                    P RV GL    + A  A    S A+G DGS+W WG++  GQLG G   T  
Sbjct: 585 DGSTTSRNVPGRVSGLP-AGIQAIVAGPSYSVALGADGSVWTWGENSNGQLGDGT-TTAR 642

Query: 161 IVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLD-SN 219
            VP+RV   A   +V +S    H +A    G L+ WG +  G++GN     ES+P    +
Sbjct: 643 PVPARVSLPA--TLVALSTRGSHTVALDTTGMLWAWGRNVSGQLGNGTLVSESTPRRVPS 700

Query: 220 IDRSSESDQEISSSTIEKAQKLV----SEGMEKEKYMPIIWEPFLVEGV---EVVDIACG 272
             R       + ++   +A   V       + +         P  V+ V     V +A G
Sbjct: 701 FARVQGFASGLRTTFALRADGTVWAWGDNSLGQLGNGATSASPVPVQAVGYPRTVPLASG 760

Query: 273 FDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFHPV--SISSGLGHSLAI-CE 329
             H L +  +G + S GSN  GQLG E       P  +       ++++G   SLA+ C+
Sbjct: 761 AQHVLAVSSDGSVFSFGSNSRGQLGYEGSATQTSPRWLTGPECIEAVAAGALFSLALSCD 820

Query: 330 VRSSNVTGGARGIVSWGWNRSSQLG------RMGPDNVP 362
                      G+ +WG N S QLG      R  P  VP
Sbjct: 821 ----------GGVWAWGDNGSGQLGDGAVTARTAPARVP 849



 Score = 94.7 bits (234), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 99/305 (32%), Positives = 143/305 (46%), Gaps = 64/305 (20%)

Query: 69  VSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASG 128
           ++AG  HSL VT  G VWAWG N + QLG G+    +T   P +V GL    V A  A  
Sbjct: 53  LAAGLNHSLYVTPAGTVWAWGANAQGQLGEGSTLQHST---PTQVVGL--TGVTAVAAGN 107

Query: 129 VVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQT 188
             S A+ ++G++W WG +  GQLG G  +++  VP++V  L G  +  ++ G  H+LA  
Sbjct: 108 THSMALREEGTVWTWGTNTDGQLGDG--VSQRSVPAQVAGLTG--VTAIAAGNLHSLALI 163

Query: 189 EDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEK 248
            +G ++ WG +  G++G+           S+  RS+                        
Sbjct: 164 -NGAVWAWGNNTTGQLGD----------GSSTSRST------------------------ 188

Query: 249 EKYMPIIWEPFLVEGV-EVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFP 307
                    P  V G+ EVV IA G  HSL L R+G + + G N  GQLG    D    P
Sbjct: 189 ---------PAKVAGLTEVVAIAAGDFHSLALKRDGTVWAWGGNYSGQLGDGTLDSRSTP 239

Query: 308 VDIN--FHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPDN--VPL 363
           V ++     V+++ G  HS+A     SS   GG   + +WG N   QLG  G  +  +PL
Sbjct: 240 VRVSGLTGIVALAGGGSHSVAA----SSTTLGGK--VWAWGDNTYGQLGNGGDVSSLLPL 293

Query: 364 VVEGL 368
            V GL
Sbjct: 294 EVPGL 298



 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 91/301 (30%), Positives = 127/301 (42%), Gaps = 59/301 (19%)

Query: 56  PTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEG 115
           P RVP L +   S++AG +H      +G+VWAWG N   QLG G L SR     P R+  
Sbjct: 392 PGRVPSLTAGA-SLAAGDHHVFLRQADGSVWAWGDNTYGQLGDGTLVSRPA---PVRLSS 447

Query: 116 LDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIV 175
               +V A  AS   S A+  DG++W WG +  GQLG   D +    PS  +        
Sbjct: 448 -TLTSVRALSASSYHSLALRSDGTVWAWGDNAYGQLG---DTSGGRRPSPAQVPGVAGAT 503

Query: 176 KVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTI 235
           +++ G  H+LA   DG ++ WG ++ G++G    A    P                    
Sbjct: 504 EIAAGTYHSLALRSDGTVWTWGDNSYGQLG--AGATPRGPR------------------- 542

Query: 236 EKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVD-IACGFDHSLVLGRNGVLLSCGSNVYG 294
                                 P +V G+ V+  +A G  HSL L  +G + + G NVYG
Sbjct: 543 ---------------------APAVVPGLAVITHVAAGLFHSLALDSSGQVWAWGDNVYG 581

Query: 295 QLGREKQDMGMFPVDINFHPVSISSGLGHSLAICEVRSSNVTGGARGIV-SWGWNRSSQL 353
           QLG         P  ++  P  I        AI    S +V  GA G V +WG N + QL
Sbjct: 582 QLGDGSTTSRNVPGRVSGLPAGIQ-------AIVAGPSYSVALGADGSVWTWGENSNGQL 634

Query: 354 G 354
           G
Sbjct: 635 G 635



 Score = 84.3 bits (207), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 97/340 (28%), Positives = 149/340 (43%), Gaps = 67/340 (19%)

Query: 18  RIFMRSASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSL 77
            +F+R A G+ V ++GD + G LG  T ++        P R+    + V ++SA  YHSL
Sbjct: 410 HVFLRQADGS-VWAWGDNTYGQLGDGTLVS-----RPAPVRLSSTLTSVRALSASSYHSL 463

Query: 78  AVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSS-AIGD 136
           A+ ++G VWAWG N   QLG  +   R +   P +V G   V      A+G   S A+  
Sbjct: 464 ALRSDGTVWAWGDNAYGQLGDTSGGRRPS---PAQVPG---VAGATEIAAGTYHSLALRS 517

Query: 137 DGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGW 196
           DG++W WG +  GQLG G        P+ V  LA   I  V+ G  H+LA    G+++ W
Sbjct: 518 DGTVWTWGDNSYGQLGAGATPRGPRAPAVVPGLA--VITHVAAGLFHSLALDSSGQVWAW 575

Query: 197 GYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIW 256
           G +  G++G+                         S+T       VS             
Sbjct: 576 GDNVYGQLGD------------------------GSTTSRNVPGRVSG------------ 599

Query: 257 EPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFHP-- 314
              L  G++   I  G  +S+ LG +G + + G N  GQLG         P  ++     
Sbjct: 600 ---LPAGIQA--IVAGPSYSVALGADGSVWTWGENSNGQLGDGTTTARPVPARVSLPATL 654

Query: 315 VSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLG 354
           V++S+   H++A+      + TG    + +WG N S QLG
Sbjct: 655 VALSTRGSHTVAL------DTTG---MLWAWGRNVSGQLG 685



 Score = 80.5 bits (197), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 109/370 (29%), Positives = 157/370 (42%), Gaps = 63/370 (17%)

Query: 26  GTAVVSFGDGSQGALGLPTSLTGVGGDAYE--PTRVPGLPSDVTSVSAGHYHSLAVTNNG 83
           G  V ++GD + G LG        GGD     P  VPGL + V ++++G  HSLA+  + 
Sbjct: 267 GGKVWAWGDNTYGQLG-------NGGDVSSLLPLEVPGL-TQVVALASGTSHSLALRGDD 318

Query: 84  AVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIG-DDGSLWV 142
           +VWAWG N + Q  +     +     P RV G+       A A G   S +G  D     
Sbjct: 319 SVWAWGDNAQAQTAQTGTSVQRV---PVRVSGVSDAQ---ALACGNAFSLVGRGDNVTLG 372

Query: 143 WGKSKRGQLGLGKDITEAIVPSRVEAL-AGEKIVKVSFGWGHALAQTEDGKLFGWGYSAD 201
           WG +  GQLG G     A+ P RV +L AG  +        H   +  DG ++ WG +  
Sbjct: 373 WGANGSGQLGNGSSSVRAL-PGRVPSLTAGASLAAGDH---HVFLRQADGSVWAWGDNTY 428

Query: 202 GRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGM--------------E 247
           G++G+    L S P    +  +  S + +S+S+      L S+G                
Sbjct: 429 GQLGD--GTLVSRPAPVRLSSTLTSVRALSASSYHS-LALRSDGTVWAWGDNAYGQLGDT 485

Query: 248 KEKYMPIIWEPFLVEGVE-VVDIACGFDHSLVLGRNGVLLSCGSNVYGQLG-----REKQ 301
                P    P  V GV    +IA G  HSL L  +G + + G N YGQLG     R  +
Sbjct: 486 SGGRRP---SPAQVPGVAGATEIAAGTYHSLALRSDGTVWTWGDNSYGQLGAGATPRGPR 542

Query: 302 DMGMFP-VDINFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQL--GRMGP 358
              + P + +  H   +++GL HSLA+              + +WG N   QL  G    
Sbjct: 543 APAVVPGLAVITH---VAAGLFHSLALDSSGQ---------VWAWGDNVYGQLGDGSTTS 590

Query: 359 DNVPLVVEGL 368
            NVP  V GL
Sbjct: 591 RNVPGRVSGL 600



 Score = 68.6 bits (166), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 57/145 (39%), Positives = 76/145 (52%), Gaps = 15/145 (10%)

Query: 65   DVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAA 124
            DV +V+ G  HSLAV  +G VWAWG N   QLG G   SR     P  V  L  V    A
Sbjct: 903  DVVAVAGGSGHSLAVRADGTVWAWGANGSGQLGDGTTTSRTL---PVFVSTLSGVQ---A 956

Query: 125  FASGVVSS-AIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEK--IVKVSFGW 181
             ASG   S A+ + G +W WG +  GQLG G   T    P +V  L+G +  +   SF  
Sbjct: 957  IASGAQHSLALAEGGVVWAWGANGSGQLGDGT-TTSRTRPVQVSGLSGVQGLVAGASF-- 1013

Query: 182  GHALAQTEDGKLFGWGYSADGRIGN 206
              +LA T  GK++ WG ++ G++G+
Sbjct: 1014 --SLALTP-GKVWSWGNNSAGQLGD 1035



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 49/137 (35%), Positives = 64/137 (46%), Gaps = 15/137 (10%)

Query: 64   SDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCA 123
            S V ++++G  HSLA+   G VWAWG N   QLG G   SR     P +V GL  V    
Sbjct: 952  SGVQAIASGAQHSLALAEGGVVWAWGANGSGQLGDGTTTSR---TRPVQVSGLSGVQGLV 1008

Query: 124  AFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKI---VKVSFG 180
            A AS   S A+   G +W WG +  GQLG      +  + SR +  AG  +   V +S G
Sbjct: 1009 AGAS--FSLAL-TPGKVWSWGNNSAGQLG------DGTLNSRSQPGAGPTLSSFVALSAG 1059

Query: 181  WGHALAQTEDGKLFGWG 197
              H +    D     WG
Sbjct: 1060 AQHTVVLRSDDSFLSWG 1076



 Score = 37.7 bits (86), Expect = 9.7,   Method: Compositional matrix adjust.
 Identities = 25/51 (49%), Positives = 31/51 (60%), Gaps = 2/51 (3%)

Query: 55   EPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRA 105
             P +V GL S V  + AG   SLA+T  G VW+WG N+  QLG G L SR+
Sbjct: 994  RPVQVSGL-SGVQGLVAGASFSLALTP-GKVWSWGNNSAGQLGDGTLNSRS 1042


>gi|301767480|ref|XP_002919156.1| PREDICTED: RCC1 and BTB domain-containing protein 2-like
           [Ailuropoda melanoleuca]
          Length = 551

 Score =  105 bits (263), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 59/152 (38%), Positives = 90/152 (59%), Gaps = 5/152 (3%)

Query: 65  DVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAA 124
            VT V+ G YHSL +T++G V+AWG NN  Q+G G   S A    P+RV G  Q  V   
Sbjct: 153 QVTEVACGSYHSLVLTSDGEVFAWGYNNSGQVGSG---STANQPIPRRVTGCLQNKVAVN 209

Query: 125 FASG-VVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGH 183
            A G + S A+ + G ++VWG +  GQLGLG    +   P R+ AL G ++ +V+ G+ H
Sbjct: 210 IACGQMCSMAVVNTGEVYVWGYNGNGQLGLGSSGNQP-TPCRIAALQGIRVQRVACGYAH 268

Query: 184 ALAQTEDGKLFGWGYSADGRIGNLGKALESSP 215
            L  T++G+++ WG ++ G++G   K+ +S P
Sbjct: 269 TLVLTDEGQVYAWGANSYGQLGTGNKSNQSYP 300



 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 64/249 (25%), Positives = 114/249 (45%), Gaps = 19/249 (7%)

Query: 77  LAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNV-CAAFASGVVSSAIG 135
           L  T N  ++  G N    LG G ++S     +P+R++ L    + C ++ SG       
Sbjct: 59  LYTTVNDEIFVLGTNCCGCLGLGDVQSTI---EPRRLDSLSGKKIACLSYGSGPHIVLAT 115

Query: 136 DDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEA-LAGEKIVKVSFGWGHALAQTEDGKLF 194
            +G ++ WG +   QLG G      +VP  +   L+ +++ +V+ G  H+L  T DG++F
Sbjct: 116 TEGEVFTWGHNAYSQLGNGT-TNHGLVPCHISTNLSNKQVTEVACGSYHSLVLTSDGEVF 174

Query: 195 GWGYSADGRIGNLGKALESSP------LDSNIDRSSESDQEISSSTIEKAQKLV------ 242
            WGY+  G++G+   A +  P      L + +  +    Q  S + +   +  V      
Sbjct: 175 AWGYNNSGQVGSGSTANQPIPRRVTGCLQNKVAVNIACGQMCSMAVVNTGEVYVWGYNGN 234

Query: 243 -SEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQ 301
              G+      P       ++G+ V  +ACG+ H+LVL   G + + G+N YGQLG   +
Sbjct: 235 GQLGLGSSGNQPTPCRIAALQGIRVQRVACGYAHTLVLTDEGQVYAWGANSYGQLGTGNK 294

Query: 302 DMGMFPVDI 310
               +P  +
Sbjct: 295 SNQSYPAPV 303



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 65/252 (25%), Positives = 108/252 (42%), Gaps = 63/252 (25%)

Query: 129 VVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWG-HALAQ 187
           V+ + + D+  ++V G +  G LGLG D+   I P R+++L+G+KI  +S+G G H +  
Sbjct: 58  VLYTTVNDE--IFVLGTNCCGCLGLG-DVQSTIEPRRLDSLSGKKIACLSYGSGPHIVLA 114

Query: 188 TEDGKLFGWGYSADGRIGN--LGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEG 245
           T +G++F WG++A  ++GN      L    + +N+                         
Sbjct: 115 TTEGEVFTWGHNAYSQLGNGTTNHGLVPCHISTNLSNK---------------------- 152

Query: 246 MEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGM 305
                              +V ++ACG  HSLVL  +G + + G N  GQ+G        
Sbjct: 153 -------------------QVTEVACGSYHSLVLTSDGEVFAWGYNNSGQVGSGSTANQP 193

Query: 306 FPVDI-----NFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQ--LGRMGP 358
            P  +     N   V+I+ G   S+A+       V  G   +  WG+N + Q  LG  G 
Sbjct: 194 IPRRVTGCLQNKVAVNIACGQMCSMAV-------VNTGE--VYVWGYNGNGQLGLGSSGN 244

Query: 359 DNVPLVVEGLEG 370
              P  +  L+G
Sbjct: 245 QPTPCRIAALQG 256


>gi|426375449|ref|XP_004054551.1| PREDICTED: RCC1 and BTB domain-containing protein 2-like isoform 2
           [Gorilla gorilla gorilla]
          Length = 527

 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 61/176 (34%), Positives = 97/176 (55%), Gaps = 5/176 (2%)

Query: 66  VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAF 125
           V  V+ G YHSL +T++G V+AWG NN  Q+G G+  ++     P+RV G  Q  V    
Sbjct: 130 VIEVACGSYHSLVLTSDGEVFAWGYNNSGQVGSGSTVNQPI---PRRVTGCLQNKVVVTI 186

Query: 126 ASG-VVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHA 184
           A G +   A+ D G ++VWG +  GQLGLG    +   P RV AL G ++ +V+ G+ H 
Sbjct: 187 ACGQMCCMAVVDTGEVYVWGYNGNGQLGLGNSGNQP-TPCRVAALQGIRVQRVACGYAHT 245

Query: 185 LAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQK 240
           L  T++G+++ WG ++ G++G   K+ +S P    +++    +     ST   A K
Sbjct: 246 LVLTDEGQVYAWGANSYGQLGTGNKSNQSYPTPVTVEKDRIIEIAACHSTHTSAAK 301



 Score = 85.5 bits (210), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 70/289 (24%), Positives = 128/289 (44%), Gaps = 25/289 (8%)

Query: 77  LAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNV-CAAFASGVVSSAIG 135
           L  T N  ++  G N    LG G ++S     +P+R++ L+   + C ++ SG       
Sbjct: 35  LYTTVNDEIFVLGTNCCGCLGLGDVQSTI---EPRRLDSLNGKKIACLSYGSGPHIVLAT 91

Query: 136 DDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEA-LAGEKIVKVSFGWGHALAQTEDGKLF 194
            +G ++ WG +   QLG G      +VP  +   L+ +++++V+ G  H+L  T DG++F
Sbjct: 92  TEGEVFTWGHNAYSQLGNGT-TNHGLVPCHISTNLSNKQVIEVACGSYHSLVLTSDGEVF 150

Query: 195 GWGYSADGRIGNLGKALESSP------LDSNIDRSSESDQEISSSTIEKAQKLV------ 242
            WGY+  G++G+     +  P      L + +  +    Q    + ++  +  V      
Sbjct: 151 AWGYNNSGQVGSGSTVNQPIPRRVTGCLQNKVVVTIACGQMCCMAVVDTGEVYVWGYNGN 210

Query: 243 -SEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQ 301
              G+      P       ++G+ V  +ACG+ H+LVL   G + + G+N YGQLG   +
Sbjct: 211 GQLGLGNSGNQPTPCRVAALQGIRVQRVACGYAHTLVLTDEGQVYAWGANSYGQLGTGNK 270

Query: 302 DMGMFPVDINFHPVSISSGLGHSLAICEVRSSNVTGGARG-IVSWGWNR 349
               +P      PV++       +A C    ++      G +  WG  R
Sbjct: 271 SNQSYPT-----PVTVEKDRIIEIAACHSTHTSAAKTQGGHVYMWGQCR 314



 Score = 61.2 bits (147), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 65/252 (25%), Positives = 108/252 (42%), Gaps = 63/252 (25%)

Query: 129 VVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWG-HALAQ 187
           V+ + + D+  ++V G +  G LGLG D+   I P R+++L G+KI  +S+G G H +  
Sbjct: 34  VLYTTVNDE--IFVLGTNCCGCLGLG-DVQSTIEPRRLDSLNGKKIACLSYGSGPHIVLA 90

Query: 188 TEDGKLFGWGYSADGRIGN--LGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEG 245
           T +G++F WG++A  ++GN      L    + +N+                         
Sbjct: 91  TTEGEVFTWGHNAYSQLGNGTTNHGLVPCHISTNLSNK---------------------- 128

Query: 246 MEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGM 305
                              +V+++ACG  HSLVL  +G + + G N  GQ+G        
Sbjct: 129 -------------------QVIEVACGSYHSLVLTSDGEVFAWGYNNSGQVGSGSTVNQP 169

Query: 306 FPVDI-----NFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQ--LGRMGP 358
            P  +     N   V+I+ G    +A+ +      TG    +  WG+N + Q  LG  G 
Sbjct: 170 IPRRVTGCLQNKVVVTIACGQMCCMAVVD------TGE---VYVWGYNGNGQLGLGNSGN 220

Query: 359 DNVPLVVEGLEG 370
              P  V  L+G
Sbjct: 221 QPTPCRVAALQG 232


>gi|62088666|dbj|BAD92780.1| RCC1-like G exchanging factor RLG variant [Homo sapiens]
          Length = 556

 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 61/176 (34%), Positives = 97/176 (55%), Gaps = 5/176 (2%)

Query: 66  VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAF 125
           V  V+ G YHSL +T++G V+AWG NN  Q+G G+  ++     P+RV G  Q  V    
Sbjct: 159 VIEVACGSYHSLVLTSDGEVFAWGYNNSGQVGSGSTVNQPI---PRRVTGCLQNKVVVTI 215

Query: 126 ASG-VVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHA 184
           A G +   A+ D G ++VWG +  GQLGLG    +   P RV AL G ++ +V+ G+ H 
Sbjct: 216 ACGQMCCMAVVDTGEVYVWGYNGNGQLGLGNSGNQP-TPCRVAALQGIRVQRVACGYAHT 274

Query: 185 LAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQK 240
           L  T++G+++ WG ++ G++G   K+ +S P    +++    +     ST   A K
Sbjct: 275 LVLTDEGQVYAWGANSYGQLGTGNKSNQSYPTPVTVEKDRIIEIAACHSTHTSAAK 330



 Score = 85.9 bits (211), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 70/289 (24%), Positives = 128/289 (44%), Gaps = 25/289 (8%)

Query: 77  LAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNV-CAAFASGVVSSAIG 135
           L  T N  ++  G N    LG G ++S     +P+R++ L+   + C ++ SG       
Sbjct: 64  LYTTVNDEIFVLGTNCCGCLGLGDVQSTI---EPRRLDSLNGKKIACLSYGSGPHIVLAT 120

Query: 136 DDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEA-LAGEKIVKVSFGWGHALAQTEDGKLF 194
            +G ++ WG +   QLG G      +VP  +   L+ +++++V+ G  H+L  T DG++F
Sbjct: 121 TEGEVFTWGHNAYSQLGNGT-TNHGLVPCHISTNLSNKQVIEVACGSYHSLVLTSDGEVF 179

Query: 195 GWGYSADGRIGNLGKALESSP------LDSNIDRSSESDQEISSSTIEKAQKLV------ 242
            WGY+  G++G+     +  P      L + +  +    Q    + ++  +  V      
Sbjct: 180 AWGYNNSGQVGSGSTVNQPIPRRVTGCLQNKVVVTIACGQMCCMAVVDTGEVYVWGYNGN 239

Query: 243 -SEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQ 301
              G+      P       ++G+ V  +ACG+ H+LVL   G + + G+N YGQLG   +
Sbjct: 240 GQLGLGNSGNQPTPCRVAALQGIRVQRVACGYAHTLVLTDEGQVYAWGANSYGQLGTGNK 299

Query: 302 DMGMFPVDINFHPVSISSGLGHSLAICEVRSSNVTGGARG-IVSWGWNR 349
               +P      PV++       +A C    ++      G +  WG  R
Sbjct: 300 SNQSYPT-----PVTVEKDRIIEIAACHSTHTSAAKTQGGHVYMWGQCR 343



 Score = 61.2 bits (147), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 65/252 (25%), Positives = 108/252 (42%), Gaps = 63/252 (25%)

Query: 129 VVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWG-HALAQ 187
           V+ + + D+  ++V G +  G LGLG D+   I P R+++L G+KI  +S+G G H +  
Sbjct: 63  VLYTTVNDE--IFVLGTNCCGCLGLG-DVQSTIEPRRLDSLNGKKIACLSYGSGPHIVLA 119

Query: 188 TEDGKLFGWGYSADGRIGN--LGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEG 245
           T +G++F WG++A  ++GN      L    + +N+                         
Sbjct: 120 TTEGEVFTWGHNAYSQLGNGTTNHGLVPCHISTNLSNK---------------------- 157

Query: 246 MEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGM 305
                              +V+++ACG  HSLVL  +G + + G N  GQ+G        
Sbjct: 158 -------------------QVIEVACGSYHSLVLTSDGEVFAWGYNNSGQVGSGSTVNQP 198

Query: 306 FPVDI-----NFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQ--LGRMGP 358
            P  +     N   V+I+ G    +A+ +      TG    +  WG+N + Q  LG  G 
Sbjct: 199 IPRRVTGCLQNKVVVTIACGQMCCMAVVD------TGE---VYVWGYNGNGQLGLGNSGN 249

Query: 359 DNVPLVVEGLEG 370
              P  V  L+G
Sbjct: 250 QPTPCRVAALQG 261


>gi|281349737|gb|EFB25321.1| hypothetical protein PANDA_007753 [Ailuropoda melanoleuca]
          Length = 527

 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 59/151 (39%), Positives = 90/151 (59%), Gaps = 5/151 (3%)

Query: 66  VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAF 125
           VT V+ G YHSL +T++G V+AWG NN  Q+G G   S A    P+RV G  Q  V    
Sbjct: 130 VTEVACGSYHSLVLTSDGEVFAWGYNNSGQVGSG---STANQPIPRRVTGCLQNKVAVNI 186

Query: 126 ASG-VVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHA 184
           A G + S A+ + G ++VWG +  GQLGLG    +   P R+ AL G ++ +V+ G+ H 
Sbjct: 187 ACGQMCSMAVVNTGEVYVWGYNGNGQLGLGSSGNQP-TPCRIAALQGIRVQRVACGYAHT 245

Query: 185 LAQTEDGKLFGWGYSADGRIGNLGKALESSP 215
           L  T++G+++ WG ++ G++G   K+ +S P
Sbjct: 246 LVLTDEGQVYAWGANSYGQLGTGNKSNQSYP 276



 Score = 84.3 bits (207), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 64/249 (25%), Positives = 114/249 (45%), Gaps = 19/249 (7%)

Query: 77  LAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNV-CAAFASGVVSSAIG 135
           L  T N  ++  G N    LG G ++S     +P+R++ L    + C ++ SG       
Sbjct: 35  LYTTVNDEIFVLGTNCCGCLGLGDVQSTI---EPRRLDSLSGKKIACLSYGSGPHIVLAT 91

Query: 136 DDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEA-LAGEKIVKVSFGWGHALAQTEDGKLF 194
            +G ++ WG +   QLG G      +VP  +   L+ +++ +V+ G  H+L  T DG++F
Sbjct: 92  TEGEVFTWGHNAYSQLGNGT-TNHGLVPCHISTNLSNKQVTEVACGSYHSLVLTSDGEVF 150

Query: 195 GWGYSADGRIGNLGKALESSP------LDSNIDRSSESDQEISSSTIEKAQKLV------ 242
            WGY+  G++G+   A +  P      L + +  +    Q  S + +   +  V      
Sbjct: 151 AWGYNNSGQVGSGSTANQPIPRRVTGCLQNKVAVNIACGQMCSMAVVNTGEVYVWGYNGN 210

Query: 243 -SEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQ 301
              G+      P       ++G+ V  +ACG+ H+LVL   G + + G+N YGQLG   +
Sbjct: 211 GQLGLGSSGNQPTPCRIAALQGIRVQRVACGYAHTLVLTDEGQVYAWGANSYGQLGTGNK 270

Query: 302 DMGMFPVDI 310
               +P  +
Sbjct: 271 SNQSYPAPV 279



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 65/252 (25%), Positives = 108/252 (42%), Gaps = 63/252 (25%)

Query: 129 VVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWG-HALAQ 187
           V+ + + D+  ++V G +  G LGLG D+   I P R+++L+G+KI  +S+G G H +  
Sbjct: 34  VLYTTVNDE--IFVLGTNCCGCLGLG-DVQSTIEPRRLDSLSGKKIACLSYGSGPHIVLA 90

Query: 188 TEDGKLFGWGYSADGRIGN--LGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEG 245
           T +G++F WG++A  ++GN      L    + +N+                         
Sbjct: 91  TTEGEVFTWGHNAYSQLGNGTTNHGLVPCHISTNLSNK---------------------- 128

Query: 246 MEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGM 305
                              +V ++ACG  HSLVL  +G + + G N  GQ+G        
Sbjct: 129 -------------------QVTEVACGSYHSLVLTSDGEVFAWGYNNSGQVGSGSTANQP 169

Query: 306 FPVDI-----NFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQ--LGRMGP 358
            P  +     N   V+I+ G   S+A+       V  G   +  WG+N + Q  LG  G 
Sbjct: 170 IPRRVTGCLQNKVAVNIACGQMCSMAV-------VNTGE--VYVWGYNGNGQLGLGSSGN 220

Query: 359 DNVPLVVEGLEG 370
              P  +  L+G
Sbjct: 221 QPTPCRIAALQG 232


>gi|397480406|ref|XP_003811475.1| PREDICTED: RCC1 and BTB domain-containing protein 2 isoform 2 [Pan
           paniscus]
 gi|426375451|ref|XP_004054552.1| PREDICTED: RCC1 and BTB domain-containing protein 2-like isoform 3
           [Gorilla gorilla gorilla]
 gi|194376922|dbj|BAG63022.1| unnamed protein product [Homo sapiens]
          Length = 556

 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 61/176 (34%), Positives = 97/176 (55%), Gaps = 5/176 (2%)

Query: 66  VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAF 125
           V  V+ G YHSL +T++G V+AWG NN  Q+G G+  ++     P+RV G  Q  V    
Sbjct: 159 VIEVACGSYHSLVLTSDGEVFAWGYNNSGQVGSGSTVNQPI---PRRVTGCLQNKVVVTI 215

Query: 126 ASG-VVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHA 184
           A G +   A+ D G ++VWG +  GQLGLG    +   P RV AL G ++ +V+ G+ H 
Sbjct: 216 ACGQMCCMAVVDTGEVYVWGYNGNGQLGLGNSGNQP-TPCRVAALQGIRVQRVACGYAHT 274

Query: 185 LAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQK 240
           L  T++G+++ WG ++ G++G   K+ +S P    +++    +     ST   A K
Sbjct: 275 LVLTDEGQVYAWGANSYGQLGTGNKSNQSYPTPVTVEKDRIIEIAACHSTHTSAAK 330



 Score = 85.5 bits (210), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 70/289 (24%), Positives = 128/289 (44%), Gaps = 25/289 (8%)

Query: 77  LAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNV-CAAFASGVVSSAIG 135
           L  T N  ++  G N    LG G ++S     +P+R++ L+   + C ++ SG       
Sbjct: 64  LYTTVNDEIFVLGTNCCGCLGLGDVQSTI---EPRRLDSLNGKKIACLSYGSGPHIVLAT 120

Query: 136 DDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEA-LAGEKIVKVSFGWGHALAQTEDGKLF 194
            +G ++ WG +   QLG G      +VP  +   L+ +++++V+ G  H+L  T DG++F
Sbjct: 121 TEGEVFTWGHNAYSQLGNGT-TNHGLVPCHISTNLSNKQVIEVACGSYHSLVLTSDGEVF 179

Query: 195 GWGYSADGRIGNLGKALESSP------LDSNIDRSSESDQEISSSTIEKAQKLV------ 242
            WGY+  G++G+     +  P      L + +  +    Q    + ++  +  V      
Sbjct: 180 AWGYNNSGQVGSGSTVNQPIPRRVTGCLQNKVVVTIACGQMCCMAVVDTGEVYVWGYNGN 239

Query: 243 -SEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQ 301
              G+      P       ++G+ V  +ACG+ H+LVL   G + + G+N YGQLG   +
Sbjct: 240 GQLGLGNSGNQPTPCRVAALQGIRVQRVACGYAHTLVLTDEGQVYAWGANSYGQLGTGNK 299

Query: 302 DMGMFPVDINFHPVSISSGLGHSLAICEVRSSNVTGGARG-IVSWGWNR 349
               +P      PV++       +A C    ++      G +  WG  R
Sbjct: 300 SNQSYPT-----PVTVEKDRIIEIAACHSTHTSAAKTQGGHVYMWGQCR 343



 Score = 61.2 bits (147), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 69/270 (25%), Positives = 113/270 (41%), Gaps = 66/270 (24%)

Query: 114 EGLDQVNVCAAFASG---VVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALA 170
           E L  +     F S    V+ + + D+  ++V G +  G LGLG D+   I P R+++L 
Sbjct: 45  EELQLIRQACVFGSAGNEVLYTTVNDE--IFVLGTNCCGCLGLG-DVQSTIEPRRLDSLN 101

Query: 171 GEKIVKVSFGWG-HALAQTEDGKLFGWGYSADGRIGN--LGKALESSPLDSNIDRSSESD 227
           G+KI  +S+G G H +  T +G++F WG++A  ++GN      L    + +N+       
Sbjct: 102 GKKIACLSYGSGPHIVLATTEGEVFTWGHNAYSQLGNGTTNHGLVPCHISTNLSNK---- 157

Query: 228 QEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLS 287
                                                +V+++ACG  HSLVL  +G + +
Sbjct: 158 -------------------------------------QVIEVACGSYHSLVLTSDGEVFA 180

Query: 288 CGSNVYGQLGREKQDMGMFPVDI-----NFHPVSISSGLGHSLAICEVRSSNVTGGARGI 342
            G N  GQ+G         P  +     N   V+I+ G    +A+ +      TG    +
Sbjct: 181 WGYNNSGQVGSGSTVNQPIPRRVTGCLQNKVVVTIACGQMCCMAVVD------TGE---V 231

Query: 343 VSWGWNRSSQ--LGRMGPDNVPLVVEGLEG 370
             WG+N + Q  LG  G    P  V  L+G
Sbjct: 232 YVWGYNGNGQLGLGNSGNQPTPCRVAALQG 261


>gi|332241905|ref|XP_003270125.1| PREDICTED: RCC1 and BTB domain-containing protein 2 isoform 2
           [Nomascus leucogenys]
          Length = 556

 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 61/176 (34%), Positives = 97/176 (55%), Gaps = 5/176 (2%)

Query: 66  VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAF 125
           V  V+ G YHSL +T++G V+AWG NN  Q+G G+  ++     P+RV G  Q  V    
Sbjct: 159 VIEVACGSYHSLVLTSDGEVFAWGYNNSGQVGSGSTVNQPI---PRRVTGCLQNKVVVTI 215

Query: 126 ASG-VVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHA 184
           A G +   A+ D G ++VWG +  GQLGLG    +   P RV AL G ++ +V+ G+ H 
Sbjct: 216 ACGQMCCMAVVDTGEVYVWGYNGNGQLGLGNSGNQP-TPCRVAALQGIRVQRVACGYAHT 274

Query: 185 LAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQK 240
           L  T++G+++ WG ++ G++G   K+ +S P    +++    +     ST   A K
Sbjct: 275 LVLTDEGQVYAWGANSYGQLGTGNKSNQSYPTPVTVEKDRIIEIAACHSTHTSAAK 330



 Score = 85.5 bits (210), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 70/289 (24%), Positives = 128/289 (44%), Gaps = 25/289 (8%)

Query: 77  LAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNV-CAAFASGVVSSAIG 135
           L  T N  ++  G N    LG G ++S     +P+R++ L+   + C ++ SG       
Sbjct: 64  LYTTVNDEIFVLGTNCCGCLGLGDVQSTI---EPRRLDSLNGKKIACLSYGSGPHIVLAT 120

Query: 136 DDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEA-LAGEKIVKVSFGWGHALAQTEDGKLF 194
            +G ++ WG +   QLG G      +VP  +   L+ +++++V+ G  H+L  T DG++F
Sbjct: 121 TEGEVFTWGHNAYSQLGNGT-TNHGLVPCHISTNLSNKQVIEVACGSYHSLVLTSDGEVF 179

Query: 195 GWGYSADGRIGNLGKALESSP------LDSNIDRSSESDQEISSSTIEKAQKLV------ 242
            WGY+  G++G+     +  P      L + +  +    Q    + ++  +  V      
Sbjct: 180 AWGYNNSGQVGSGSTVNQPIPRRVTGCLQNKVVVTIACGQMCCMAVVDTGEVYVWGYNGN 239

Query: 243 -SEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQ 301
              G+      P       ++G+ V  +ACG+ H+LVL   G + + G+N YGQLG   +
Sbjct: 240 GQLGLGNSGNQPTPCRVAALQGIRVQRVACGYAHTLVLTDEGQVYAWGANSYGQLGTGNK 299

Query: 302 DMGMFPVDINFHPVSISSGLGHSLAICEVRSSNVTGGARG-IVSWGWNR 349
               +P      PV++       +A C    ++      G +  WG  R
Sbjct: 300 SNQSYPT-----PVTVEKDRIIEIAACHSTHTSAAKTQGGHVYMWGQCR 343



 Score = 61.2 bits (147), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 69/270 (25%), Positives = 113/270 (41%), Gaps = 66/270 (24%)

Query: 114 EGLDQVNVCAAFASG---VVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALA 170
           E L  +     F S    V+ + + D+  ++V G +  G LGLG D+   I P R+++L 
Sbjct: 45  EELQLIRQACVFGSAGNEVLYTTVNDE--IFVLGTNCCGCLGLG-DVQSTIEPRRLDSLN 101

Query: 171 GEKIVKVSFGWG-HALAQTEDGKLFGWGYSADGRIGN--LGKALESSPLDSNIDRSSESD 227
           G+KI  +S+G G H +  T +G++F WG++A  ++GN      L    + +N+       
Sbjct: 102 GKKIACLSYGSGPHIVLATTEGEVFTWGHNAYSQLGNGTTNHGLVPCHISTNLSNK---- 157

Query: 228 QEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLS 287
                                                +V+++ACG  HSLVL  +G + +
Sbjct: 158 -------------------------------------QVIEVACGSYHSLVLTSDGEVFA 180

Query: 288 CGSNVYGQLGREKQDMGMFPVDI-----NFHPVSISSGLGHSLAICEVRSSNVTGGARGI 342
            G N  GQ+G         P  +     N   V+I+ G    +A+ +      TG    +
Sbjct: 181 WGYNNSGQVGSGSTVNQPIPRRVTGCLQNKVVVTIACGQMCCMAVVD------TGE---V 231

Query: 343 VSWGWNRSSQ--LGRMGPDNVPLVVEGLEG 370
             WG+N + Q  LG  G    P  V  L+G
Sbjct: 232 YVWGYNGNGQLGLGNSGNQPTPCRVAALQG 261


>gi|330836206|ref|YP_004410847.1| chromosome condensation regulator RCC1 [Sphaerochaeta coccoides DSM
           17374]
 gi|329748109|gb|AEC01465.1| regulator of chromosome condensation RCC1 [Sphaerochaeta coccoides
           DSM 17374]
          Length = 374

 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 94/341 (27%), Positives = 159/341 (46%), Gaps = 34/341 (9%)

Query: 33  GDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNN 92
           GD   G LG      G   D Y P RV    +DV +VSAG+ H++ + N+G +WA G+N 
Sbjct: 58  GDNWYGQLG-----DGTDEDKYTPVRVM---TDVAAVSAGNSHTMILKNDGTLWATGKNF 109

Query: 93  EVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLG 152
             QLG GA + +A  N P ++      +V +  A    +  +  DG+LW  G +  GQLG
Sbjct: 110 FGQLGDGATD-QADKNTPVQI----MTDVASVSAGNEHTMIVKKDGTLWGTGYNTPGQLG 164

Query: 153 LGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALE 212
            G  I + + P ++       +  VS G+ H +   +DG L+  G + DG++G+   + +
Sbjct: 165 DGTWINK-VTPEQIMT----DVASVSAGYAHTMILKKDGTLWATGRNNDGQLGDGTWSSK 219

Query: 213 SSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEK-----EKYMPIIWEPFLVE--GVE 265
            +P     D ++       +  ++K   L + G        +  M     P  V   G +
Sbjct: 220 DTPEQIMTDVAAVFAGYAHTMIVKKDDTLWATGQNNAGQLGDGSMTSKNTPVQVSSMGSD 279

Query: 266 VVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFHPVSISSGLGHSL 325
           V  ++ G +H+++L ++G LL+ G N YGQLG    +    PV +     S+S+G  H++
Sbjct: 280 VATVSVGDNHTMILKKDGTLLATGYNYYGQLGIGNNEDKSTPVQVMTDVASVSAGGSHTM 339

Query: 326 AICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPDNVPLVVE 366
            + +  +         +   G+N   QLG   PD+    V+
Sbjct: 340 ILKKDGT---------LWGTGYNIEGQLGNGTPDDTSTPVK 371



 Score = 91.7 bits (226), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 71/247 (28%), Positives = 112/247 (45%), Gaps = 53/247 (21%)

Query: 64  SDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCA 123
           +DV SVSAG+ H++ +  +G +WA GRNN+ QLG G   S+ T   P+++      +V A
Sbjct: 179 TDVASVSAGYAHTMILKKDGTLWATGRNNDGQLGDGTWSSKDT---PEQI----MTDVAA 231

Query: 124 AFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGH 183
            FA    +  +  D +LW  G++  GQLG G  +T    P +V ++ G  +  VS G  H
Sbjct: 232 VFAGYAHTMIVKKDDTLWATGQNNAGQLGDGS-MTSKNTPVQVSSM-GSDVATVSVGDNH 289

Query: 184 ALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVS 243
            +   +DG L   GY+  G++G          + +N D+S+                   
Sbjct: 290 TMILKKDGTLLATGYNYYGQLG----------IGNNEDKST------------------- 320

Query: 244 EGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDM 303
                         P  V   +V  ++ G  H+++L ++G L   G N+ GQLG    D 
Sbjct: 321 --------------PVQVM-TDVASVSAGGSHTMILKKDGTLWGTGYNIEGQLGNGTPDD 365

Query: 304 GMFPVDI 310
              PV I
Sbjct: 366 TSTPVKI 372



 Score = 85.5 bits (210), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 83/309 (26%), Positives = 141/309 (45%), Gaps = 31/309 (10%)

Query: 57  TRVPGLP---SDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRV 113
           T  PG P   + VT++SAG YH++ + N+G +WA G N   QLG G  E + T   P RV
Sbjct: 23  TACPGEPKPSAKVTAISAGLYHTMILKNDGTLWATGDNWYGQLGDGTDEDKYT---PVRV 79

Query: 114 EGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLG-KDITEAIVPSRVEALAGE 172
                 +V A  A    +  + +DG+LW  GK+  GQLG G  D  +   P ++      
Sbjct: 80  ----MTDVAAVSAGNSHTMILKNDGTLWATGKNFFGQLGDGATDQADKNTPVQIMT---- 131

Query: 173 KIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISS 232
            +  VS G  H +   +DG L+G GY+  G++G+     + +P     D +S S     +
Sbjct: 132 DVASVSAGNEHTMIVKKDGTLWGTGYNTPGQLGDGTWINKVTPEQIMTDVASVSAGYAHT 191

Query: 233 STIEKAQKLVSEGMEKEKYM-PIIWEPFLVEGVEVVDIA---CGFDHSLVLGRNGVLLSC 288
             ++K   L + G   +  +    W         + D+A    G+ H++++ ++  L + 
Sbjct: 192 MILKKDGTLWATGRNNDGQLGDGTWSSKDTPEQIMTDVAAVFAGYAHTMIVKKDDTLWAT 251

Query: 289 GSNVYGQLGREKQDMGMFPVDIN---FHPVSISSGLGHSLAICEVRSSNVTGGARGIVSW 345
           G N  GQLG         PV ++       ++S G  H++ + +  +         +++ 
Sbjct: 252 GQNNAGQLGDGSMTSKNTPVQVSSMGSDVATVSVGDNHTMILKKDGT---------LLAT 302

Query: 346 GWNRSSQLG 354
           G+N   QLG
Sbjct: 303 GYNYYGQLG 311


>gi|55730398|emb|CAH91921.1| hypothetical protein [Pongo abelii]
          Length = 527

 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 61/176 (34%), Positives = 97/176 (55%), Gaps = 5/176 (2%)

Query: 66  VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAF 125
           V  V+ G YHSL +T++G V+AWG NN  Q+G G+  ++     P+RV G  Q  V    
Sbjct: 130 VIEVACGSYHSLVLTSDGEVFAWGYNNSGQVGSGSTVNQPI---PRRVTGCLQNKVVVTI 186

Query: 126 ASG-VVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHA 184
           A G +   A+ D G ++VWG +  GQLGLG    +   P RV AL G ++ +V+ G+ H 
Sbjct: 187 ACGQMCCMAVVDTGEVYVWGYNGNGQLGLGNSGNQP-TPCRVAALQGIRVQRVACGYAHT 245

Query: 185 LAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQK 240
           L  T++G+++ WG ++ G++G   K+ +S P    +++    +     ST   A K
Sbjct: 246 LVLTDEGQVYAWGANSYGQLGTGNKSNQSYPTPVTVEKDRIIEIAACHSTHTSAAK 301



 Score = 84.7 bits (208), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 70/289 (24%), Positives = 127/289 (43%), Gaps = 25/289 (8%)

Query: 77  LAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNV-CAAFASGVVSSAIG 135
           L  T N  ++  G N    LG G + S     +P+R++ L+   + C ++ SG       
Sbjct: 35  LYTTVNDEIFVLGTNCCGCLGLGDVRSTI---EPRRLDSLNGKKIACLSYGSGPHIVLAT 91

Query: 136 DDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEA-LAGEKIVKVSFGWGHALAQTEDGKLF 194
            +G ++ WG +   QLG G      +VP  +   L+ +++++V+ G  H+L  T DG++F
Sbjct: 92  TEGEVFTWGHNAYSQLGNGT-TNHGLVPCHISTNLSNKQVIEVACGSYHSLVLTSDGEVF 150

Query: 195 GWGYSADGRIGNLGKALESSP------LDSNIDRSSESDQEISSSTIEKAQKLV------ 242
            WGY+  G++G+     +  P      L + +  +    Q    + ++  +  V      
Sbjct: 151 AWGYNNSGQVGSGSTVNQPIPRRVTGCLQNKVVVTIACGQMCCMAVVDTGEVYVWGYNGN 210

Query: 243 -SEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQ 301
              G+      P       ++G+ V  +ACG+ H+LVL   G + + G+N YGQLG   +
Sbjct: 211 GQLGLGNSGNQPTPCRVAALQGIRVQRVACGYAHTLVLTDEGQVYAWGANSYGQLGTGNK 270

Query: 302 DMGMFPVDINFHPVSISSGLGHSLAICEVRSSNVTGGARG-IVSWGWNR 349
               +P      PV++       +A C    ++      G +  WG  R
Sbjct: 271 SNQSYPT-----PVTVEKDRIIEIAACHSTHTSAAKTQGGHVYMWGQCR 314



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 65/252 (25%), Positives = 108/252 (42%), Gaps = 63/252 (25%)

Query: 129 VVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWG-HALAQ 187
           V+ + + D+  ++V G +  G LGLG D+   I P R+++L G+KI  +S+G G H +  
Sbjct: 34  VLYTTVNDE--IFVLGTNCCGCLGLG-DVRSTIEPRRLDSLNGKKIACLSYGSGPHIVLA 90

Query: 188 TEDGKLFGWGYSADGRIGN--LGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEG 245
           T +G++F WG++A  ++GN      L    + +N+                         
Sbjct: 91  TTEGEVFTWGHNAYSQLGNGTTNHGLVPCHISTNLSNK---------------------- 128

Query: 246 MEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGM 305
                              +V+++ACG  HSLVL  +G + + G N  GQ+G        
Sbjct: 129 -------------------QVIEVACGSYHSLVLTSDGEVFAWGYNNSGQVGSGSTVNQP 169

Query: 306 FPVDI-----NFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQ--LGRMGP 358
            P  +     N   V+I+ G    +A+ +      TG    +  WG+N + Q  LG  G 
Sbjct: 170 IPRRVTGCLQNKVVVTIACGQMCCMAVVD------TGE---VYVWGYNGNGQLGLGNSGN 220

Query: 359 DNVPLVVEGLEG 370
              P  V  L+G
Sbjct: 221 QPTPCRVAALQG 232


>gi|4557445|ref|NP_001259.1| RCC1 and BTB domain-containing protein 2 [Homo sapiens]
 gi|197099869|ref|NP_001125174.1| RCC1 and BTB domain-containing protein 2 isoform 1 [Pongo abelii]
 gi|332241903|ref|XP_003270124.1| PREDICTED: RCC1 and BTB domain-containing protein 2 isoform 1
           [Nomascus leucogenys]
 gi|397480404|ref|XP_003811474.1| PREDICTED: RCC1 and BTB domain-containing protein 2 isoform 1 [Pan
           paniscus]
 gi|426375447|ref|XP_004054550.1| PREDICTED: RCC1 and BTB domain-containing protein 2-like isoform 1
           [Gorilla gorilla gorilla]
 gi|74739686|sp|O95199.1|RCBT2_HUMAN RecName: Full=RCC1 and BTB domain-containing protein 2; AltName:
           Full=Chromosome condensation 1-like; Short=CHC1-L;
           AltName: Full=RCC1-like G exchanging factor; AltName:
           Full=Regulator of chromosome condensation and BTB
           domain-containing protein 2
 gi|75042250|sp|Q5RCZ7.1|RCBT2_PONAB RecName: Full=RCC1 and BTB domain-containing protein 2; AltName:
           Full=Regulator of chromosome condensation and BTB
           domain-containing protein 2
 gi|3789799|gb|AAC79987.1| RCC1-like G exchanging factor RLG [Homo sapiens]
 gi|20810515|gb|AAH29052.1| Regulator of chromosome condensation (RCC1) and BTB (POZ) domain
           containing protein 2 [Homo sapiens]
 gi|32891797|gb|AAP88928.1| chromosome condensation 1-like [Homo sapiens]
 gi|55727208|emb|CAH90360.1| hypothetical protein [Pongo abelii]
 gi|119629204|gb|EAX08799.1| regulator of chromosome condensation (RCC1) and BTB (POZ) domain
           containing protein 2, isoform CRA_a [Homo sapiens]
 gi|123979830|gb|ABM81744.1| regulator of chromosome condensation (RCC1) and BTB (POZ) domain
           containing protein 2 [synthetic construct]
 gi|124000595|gb|ABM87806.1| regulator of chromosome condensation (RCC1) and BTB (POZ) domain
           containing protein 2 [synthetic construct]
 gi|189055081|dbj|BAG38065.1| unnamed protein product [Homo sapiens]
          Length = 551

 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 61/176 (34%), Positives = 97/176 (55%), Gaps = 5/176 (2%)

Query: 66  VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAF 125
           V  V+ G YHSL +T++G V+AWG NN  Q+G G+  ++     P+RV G  Q  V    
Sbjct: 154 VIEVACGSYHSLVLTSDGEVFAWGYNNSGQVGSGSTVNQPI---PRRVTGCLQNKVVVTI 210

Query: 126 ASG-VVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHA 184
           A G +   A+ D G ++VWG +  GQLGLG    +   P RV AL G ++ +V+ G+ H 
Sbjct: 211 ACGQMCCMAVVDTGEVYVWGYNGNGQLGLGNSGNQP-TPCRVAALQGIRVQRVACGYAHT 269

Query: 185 LAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQK 240
           L  T++G+++ WG ++ G++G   K+ +S P    +++    +     ST   A K
Sbjct: 270 LVLTDEGQVYAWGANSYGQLGTGNKSNQSYPTPVTVEKDRIIEIAACHSTHTSAAK 325



 Score = 85.5 bits (210), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 70/289 (24%), Positives = 128/289 (44%), Gaps = 25/289 (8%)

Query: 77  LAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNV-CAAFASGVVSSAIG 135
           L  T N  ++  G N    LG G ++S     +P+R++ L+   + C ++ SG       
Sbjct: 59  LYTTVNDEIFVLGTNCCGCLGLGDVQSTI---EPRRLDSLNGKKIACLSYGSGPHIVLAT 115

Query: 136 DDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEA-LAGEKIVKVSFGWGHALAQTEDGKLF 194
            +G ++ WG +   QLG G      +VP  +   L+ +++++V+ G  H+L  T DG++F
Sbjct: 116 TEGEVFTWGHNAYSQLGNGT-TNHGLVPCHISTNLSNKQVIEVACGSYHSLVLTSDGEVF 174

Query: 195 GWGYSADGRIGNLGKALESSP------LDSNIDRSSESDQEISSSTIEKAQKLV------ 242
            WGY+  G++G+     +  P      L + +  +    Q    + ++  +  V      
Sbjct: 175 AWGYNNSGQVGSGSTVNQPIPRRVTGCLQNKVVVTIACGQMCCMAVVDTGEVYVWGYNGN 234

Query: 243 -SEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQ 301
              G+      P       ++G+ V  +ACG+ H+LVL   G + + G+N YGQLG   +
Sbjct: 235 GQLGLGNSGNQPTPCRVAALQGIRVQRVACGYAHTLVLTDEGQVYAWGANSYGQLGTGNK 294

Query: 302 DMGMFPVDINFHPVSISSGLGHSLAICEVRSSNVTGGARG-IVSWGWNR 349
               +P      PV++       +A C    ++      G +  WG  R
Sbjct: 295 SNQSYPT-----PVTVEKDRIIEIAACHSTHTSAAKTQGGHVYMWGQCR 338



 Score = 60.8 bits (146), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 65/252 (25%), Positives = 108/252 (42%), Gaps = 63/252 (25%)

Query: 129 VVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWG-HALAQ 187
           V+ + + D+  ++V G +  G LGLG D+   I P R+++L G+KI  +S+G G H +  
Sbjct: 58  VLYTTVNDE--IFVLGTNCCGCLGLG-DVQSTIEPRRLDSLNGKKIACLSYGSGPHIVLA 114

Query: 188 TEDGKLFGWGYSADGRIGN--LGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEG 245
           T +G++F WG++A  ++GN      L    + +N+                         
Sbjct: 115 TTEGEVFTWGHNAYSQLGNGTTNHGLVPCHISTNLSNK---------------------- 152

Query: 246 MEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGM 305
                              +V+++ACG  HSLVL  +G + + G N  GQ+G        
Sbjct: 153 -------------------QVIEVACGSYHSLVLTSDGEVFAWGYNNSGQVGSGSTVNQP 193

Query: 306 FPVDI-----NFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQ--LGRMGP 358
            P  +     N   V+I+ G    +A+ +      TG    +  WG+N + Q  LG  G 
Sbjct: 194 IPRRVTGCLQNKVVVTIACGQMCCMAVVD------TGE---VYVWGYNGNGQLGLGNSGN 244

Query: 359 DNVPLVVEGLEG 370
              P  V  L+G
Sbjct: 245 QPTPCRVAALQG 256


>gi|403303292|ref|XP_003942270.1| PREDICTED: RCC1 and BTB domain-containing protein 2 isoform 1
           [Saimiri boliviensis boliviensis]
          Length = 551

 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 61/176 (34%), Positives = 97/176 (55%), Gaps = 5/176 (2%)

Query: 66  VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAF 125
           V  V+ G YHSL +T++G V+AWG NN  Q+G G+  ++     P+RV G  Q  V    
Sbjct: 154 VIEVACGSYHSLVLTSDGEVFAWGYNNSGQVGSGSTINQPI---PRRVTGCLQNKVVVTI 210

Query: 126 ASG-VVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHA 184
           A G +   A+ D G ++VWG +  GQLGLG    +   P RV AL G ++ +V+ G+ H 
Sbjct: 211 ACGQMCCMAVVDSGEVYVWGYNGNGQLGLGNSGNQP-TPCRVAALQGIRVQRVACGYAHT 269

Query: 185 LAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQK 240
           L  T++G+++ WG ++ G++G   K+ +S P    +++    +     ST   A K
Sbjct: 270 LVLTDEGQVYAWGANSYGQLGTGNKSNQSYPTPVTVEKDRIIEIAACHSTHTSAAK 325



 Score = 84.3 bits (207), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 70/289 (24%), Positives = 127/289 (43%), Gaps = 25/289 (8%)

Query: 77  LAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNV-CAAFASGVVSSAIG 135
           L  T N  ++  G N    LG G ++S     +P+R++ L    + C ++ SG       
Sbjct: 59  LYTTVNDEIFVLGTNCCGCLGLGDVQSTI---EPRRLDSLSGKKIACLSYGSGPHIVLAT 115

Query: 136 DDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEA-LAGEKIVKVSFGWGHALAQTEDGKLF 194
            +G ++ WG +   QLG G      +VP  +   L+ +++++V+ G  H+L  T DG++F
Sbjct: 116 TEGEVFTWGHNAYSQLGNGT-TNHGLVPCHISTNLSNKQVIEVACGSYHSLVLTSDGEVF 174

Query: 195 GWGYSADGRIGNLGKALESSP------LDSNIDRSSESDQEISSSTIEKAQKLV------ 242
            WGY+  G++G+     +  P      L + +  +    Q    + ++  +  V      
Sbjct: 175 AWGYNNSGQVGSGSTINQPIPRRVTGCLQNKVVVTIACGQMCCMAVVDSGEVYVWGYNGN 234

Query: 243 -SEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQ 301
              G+      P       ++G+ V  +ACG+ H+LVL   G + + G+N YGQLG   +
Sbjct: 235 GQLGLGNSGNQPTPCRVAALQGIRVQRVACGYAHTLVLTDEGQVYAWGANSYGQLGTGNK 294

Query: 302 DMGMFPVDINFHPVSISSGLGHSLAICEVRSSNVTGGARG-IVSWGWNR 349
               +P      PV++       +A C    ++      G +  WG  R
Sbjct: 295 SNQSYPT-----PVTVEKDRIIEIAACHSTHTSAAKTQGGHVYMWGQCR 338



 Score = 62.0 bits (149), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 65/252 (25%), Positives = 108/252 (42%), Gaps = 63/252 (25%)

Query: 129 VVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWG-HALAQ 187
           V+ + + D+  ++V G +  G LGLG D+   I P R+++L+G+KI  +S+G G H +  
Sbjct: 58  VLYTTVNDE--IFVLGTNCCGCLGLG-DVQSTIEPRRLDSLSGKKIACLSYGSGPHIVLA 114

Query: 188 TEDGKLFGWGYSADGRIGN--LGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEG 245
           T +G++F WG++A  ++GN      L    + +N+                         
Sbjct: 115 TTEGEVFTWGHNAYSQLGNGTTNHGLVPCHISTNLSNK---------------------- 152

Query: 246 MEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGM 305
                              +V+++ACG  HSLVL  +G + + G N  GQ+G        
Sbjct: 153 -------------------QVIEVACGSYHSLVLTSDGEVFAWGYNNSGQVGSGSTINQP 193

Query: 306 FPVDI-----NFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQ--LGRMGP 358
            P  +     N   V+I+ G    +A+       V  G   +  WG+N + Q  LG  G 
Sbjct: 194 IPRRVTGCLQNKVVVTIACGQMCCMAV-------VDSGE--VYVWGYNGNGQLGLGNSGN 244

Query: 359 DNVPLVVEGLEG 370
              P  V  L+G
Sbjct: 245 QPTPCRVAALQG 256


>gi|354487926|ref|XP_003506122.1| PREDICTED: RCC1 and BTB domain-containing protein 2 [Cricetulus
           griseus]
 gi|344253822|gb|EGW09926.1| RCC1 and BTB domain-containing protein 2 [Cricetulus griseus]
          Length = 551

 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 60/151 (39%), Positives = 89/151 (58%), Gaps = 5/151 (3%)

Query: 66  VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAF 125
           V  V+ G YHSL +T++G V+AWG NN  Q+G G   S A    P+RV G  Q  V    
Sbjct: 154 VIEVACGSYHSLVLTSDGEVFAWGYNNSGQVGSG---STANQPIPRRVTGCLQNKVVMNI 210

Query: 126 ASG-VVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHA 184
           A G + S A+ D G ++VWG +  GQLGLG    +   P RV AL G ++ +V+ G+ H 
Sbjct: 211 ACGQMCSMAVVDTGEVYVWGYNGNGQLGLGSSGNQP-TPCRVAALQGIRVQRVACGYAHT 269

Query: 185 LAQTEDGKLFGWGYSADGRIGNLGKALESSP 215
           L  T++G+++ WG ++ G++G   K+ +S P
Sbjct: 270 LVLTDEGQVYAWGANSYGQLGTGNKSNQSYP 300



 Score = 82.8 bits (203), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 71/289 (24%), Positives = 127/289 (43%), Gaps = 25/289 (8%)

Query: 77  LAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCA-AFASGVVSSAIG 135
           L  T +  ++  G N    LG G ++S     +P+R+  L    + + ++ SG       
Sbjct: 59  LYTTVDDEIFVLGTNCSGCLGIGDIQSTI---EPRRLNSLTGKKIASLSYGSGPHIVLAT 115

Query: 136 DDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEA-LAGEKIVKVSFGWGHALAQTEDGKLF 194
            DG ++ WG +   QLG G      +VP  +   L+ +++++V+ G  H+L  T DG++F
Sbjct: 116 TDGEVFTWGHNAYSQLGNGT-TNHGLVPCHISTNLSNKQVIEVACGSYHSLVLTSDGEVF 174

Query: 195 GWGYSADGRIGNLGKALESSP------LDSNIDRSSESDQEISSSTIEKAQKLV------ 242
            WGY+  G++G+   A +  P      L + +  +    Q  S + ++  +  V      
Sbjct: 175 AWGYNNSGQVGSGSTANQPIPRRVTGCLQNKVVMNIACGQMCSMAVVDTGEVYVWGYNGN 234

Query: 243 -SEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQ 301
              G+      P       ++G+ V  +ACG+ H+LVL   G + + G+N YGQLG   +
Sbjct: 235 GQLGLGSSGNQPTPCRVAALQGIRVQRVACGYAHTLVLTDEGQVYAWGANSYGQLGTGNK 294

Query: 302 DMGMFPVDINFHPVSISSGLGHSLAICEVRSSNVTGGARG-IVSWGWNR 349
               +P      PV +       +A C    ++      G +  WG  R
Sbjct: 295 SNQSYPT-----PVVVEKDRIIEIAACHSAHTSAAKTQGGHVYMWGQCR 338



 Score = 64.3 bits (155), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 68/270 (25%), Positives = 116/270 (42%), Gaps = 63/270 (23%)

Query: 111 KRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALA 170
           + ++ + Q  V  +  + V+ + + D+  ++V G +  G LG+G DI   I P R+ +L 
Sbjct: 40  EELQSIRQACVFGSAGNEVLYTTVDDE--IFVLGTNCSGCLGIG-DIQSTIEPRRLNSLT 96

Query: 171 GEKIVKVSFGWG-HALAQTEDGKLFGWGYSADGRIGN--LGKALESSPLDSNIDRSSESD 227
           G+KI  +S+G G H +  T DG++F WG++A  ++GN      L    + +N+       
Sbjct: 97  GKKIASLSYGSGPHIVLATTDGEVFTWGHNAYSQLGNGTTNHGLVPCHISTNLSNK---- 152

Query: 228 QEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLS 287
                                                +V+++ACG  HSLVL  +G + +
Sbjct: 153 -------------------------------------QVIEVACGSYHSLVLTSDGEVFA 175

Query: 288 CGSNVYGQLGREKQDMGMFPVDI-----NFHPVSISSGLGHSLAICEVRSSNVTGGARGI 342
            G N  GQ+G         P  +     N   ++I+ G   S+A+ +      TG    +
Sbjct: 176 WGYNNSGQVGSGSTANQPIPRRVTGCLQNKVVMNIACGQMCSMAVVD------TGE---V 226

Query: 343 VSWGWNRSSQ--LGRMGPDNVPLVVEGLEG 370
             WG+N + Q  LG  G    P  V  L+G
Sbjct: 227 YVWGYNGNGQLGLGSSGNQPTPCRVAALQG 256


>gi|207080016|ref|NP_001128757.1| RCC1 and BTB domain-containing protein 2 isoform 2 [Pongo abelii]
 gi|55726291|emb|CAH89917.1| hypothetical protein [Pongo abelii]
          Length = 527

 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 61/176 (34%), Positives = 97/176 (55%), Gaps = 5/176 (2%)

Query: 66  VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAF 125
           V  V+ G YHSL +T++G V+AWG NN  Q+G G+  ++     P+RV G  Q  V    
Sbjct: 130 VIEVACGSYHSLVLTSDGEVFAWGYNNSGQVGSGSTVNQPI---PRRVTGCLQNKVVVTI 186

Query: 126 ASG-VVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHA 184
           A G +   A+ D G ++VWG +  GQLGLG    +   P RV AL G ++ +V+ G+ H 
Sbjct: 187 ACGQMCCMAVVDTGEVYVWGYNGNGQLGLGNSGNQP-TPCRVAALQGIRVQRVACGYAHT 245

Query: 185 LAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQK 240
           L  T++G+++ WG ++ G++G   K+ +S P    +++    +     ST   A K
Sbjct: 246 LVLTDEGQVYAWGANSYGQLGTGNKSNQSYPTPVTVEKDRIIEIAACHSTHTSAAK 301



 Score = 85.5 bits (210), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 70/289 (24%), Positives = 128/289 (44%), Gaps = 25/289 (8%)

Query: 77  LAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNV-CAAFASGVVSSAIG 135
           L  T N  ++  G N    LG G ++S     +P+R++ L+   + C ++ SG       
Sbjct: 35  LYTTVNDEIFVLGTNCCGCLGLGDVQSTI---EPRRLDSLNGKKIACLSYGSGPHIVLAT 91

Query: 136 DDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEA-LAGEKIVKVSFGWGHALAQTEDGKLF 194
            +G ++ WG +   QLG G      +VP  +   L+ +++++V+ G  H+L  T DG++F
Sbjct: 92  TEGEVFTWGHNAYSQLGNGT-TNHGLVPCHISTNLSNKQVIEVACGSYHSLVLTSDGEVF 150

Query: 195 GWGYSADGRIGNLGKALESSP------LDSNIDRSSESDQEISSSTIEKAQKLV------ 242
            WGY+  G++G+     +  P      L + +  +    Q    + ++  +  V      
Sbjct: 151 AWGYNNSGQVGSGSTVNQPIPRRVTGCLQNKVVVTIACGQMCCMAVVDTGEVYVWGYNGN 210

Query: 243 -SEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQ 301
              G+      P       ++G+ V  +ACG+ H+LVL   G + + G+N YGQLG   +
Sbjct: 211 GQLGLGNSGNQPTPCRVAALQGIRVQRVACGYAHTLVLTDEGQVYAWGANSYGQLGTGNK 270

Query: 302 DMGMFPVDINFHPVSISSGLGHSLAICEVRSSNVTGGARG-IVSWGWNR 349
               +P      PV++       +A C    ++      G +  WG  R
Sbjct: 271 SNQSYPT-----PVTVEKDRIIEIAACHSTHTSAAKTQGGHVYMWGQCR 314



 Score = 60.8 bits (146), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 65/252 (25%), Positives = 108/252 (42%), Gaps = 63/252 (25%)

Query: 129 VVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWG-HALAQ 187
           V+ + + D+  ++V G +  G LGLG D+   I P R+++L G+KI  +S+G G H +  
Sbjct: 34  VLYTTVNDE--IFVLGTNCCGCLGLG-DVQSTIEPRRLDSLNGKKIACLSYGSGPHIVLA 90

Query: 188 TEDGKLFGWGYSADGRIGN--LGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEG 245
           T +G++F WG++A  ++GN      L    + +N+                         
Sbjct: 91  TTEGEVFTWGHNAYSQLGNGTTNHGLVPCHISTNLSNK---------------------- 128

Query: 246 MEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGM 305
                              +V+++ACG  HSLVL  +G + + G N  GQ+G        
Sbjct: 129 -------------------QVIEVACGSYHSLVLTSDGEVFAWGYNNSGQVGSGSTVNQP 169

Query: 306 FPVDI-----NFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQ--LGRMGP 358
            P  +     N   V+I+ G    +A+ +      TG    +  WG+N + Q  LG  G 
Sbjct: 170 IPRRVTGCLQNKVVVTIACGQMCCMAVVD------TGE---VYVWGYNGNGQLGLGNSGN 220

Query: 359 DNVPLVVEGLEG 370
              P  V  L+G
Sbjct: 221 QPTPCRVAALQG 232


>gi|395848168|ref|XP_003796731.1| PREDICTED: RCC1 and BTB domain-containing protein 2 [Otolemur
           garnettii]
          Length = 551

 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 59/151 (39%), Positives = 89/151 (58%), Gaps = 5/151 (3%)

Query: 66  VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAF 125
           V  V+ G YHSL +T++G V+AWG NN  Q+G G   S A    P+RV G  Q  V    
Sbjct: 154 VIEVACGSYHSLVLTSDGEVFAWGYNNSGQVGSG---STANQPIPRRVTGCLQNKVIVTI 210

Query: 126 ASG-VVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHA 184
           A G + S A+ D G ++VWG +  GQLGLG    +   P R+ AL G ++ +V+ G+ H 
Sbjct: 211 ACGQMCSMAVVDTGEVFVWGYNGNGQLGLGSSGNQP-TPCRIAALQGIRVQRVACGYAHT 269

Query: 185 LAQTEDGKLFGWGYSADGRIGNLGKALESSP 215
           L  T++G+++ WG ++ G++G   K+ +S P
Sbjct: 270 LVLTDEGQVYAWGANSYGQLGTGNKSNQSYP 300



 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 71/289 (24%), Positives = 128/289 (44%), Gaps = 25/289 (8%)

Query: 77  LAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNV-CAAFASGVVSSAIG 135
           L  T N  ++  G N    LG G ++S     +P++++ L    + C ++ SG       
Sbjct: 59  LYTTVNDEIFVLGTNCCGCLGLGDIQSTI---EPRKLDSLSGKKIACLSYGSGPHVVLAT 115

Query: 136 DDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEA-LAGEKIVKVSFGWGHALAQTEDGKLF 194
            +G ++ WG +   QLG G      +VP  +   L+ +++++V+ G  H+L  T DG++F
Sbjct: 116 TEGEVFTWGHNAYSQLGNGT-TNHGLVPCHISTNLSNKQVIEVACGSYHSLVLTSDGEVF 174

Query: 195 GWGYSADGRIGNLGKALESSP------LDSNIDRSSESDQEISSSTIEKAQKLV------ 242
            WGY+  G++G+   A +  P      L + +  +    Q  S + ++  +  V      
Sbjct: 175 AWGYNNSGQVGSGSTANQPIPRRVTGCLQNKVIVTIACGQMCSMAVVDTGEVFVWGYNGN 234

Query: 243 -SEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQ 301
              G+      P       ++G+ V  +ACG+ H+LVL   G + + G+N YGQLG   +
Sbjct: 235 GQLGLGSSGNQPTPCRIAALQGIRVQRVACGYAHTLVLTDEGQVYAWGANSYGQLGTGNK 294

Query: 302 DMGMFPVDINFHPVSISSGLGHSLAICEVRSSNVTGGARG-IVSWGWNR 349
               +P      PV +       +A C    ++      G +  WG  R
Sbjct: 295 SNQSYPT-----PVVVEKDRVIEIAACHSAHTSAAKTQGGHVYMWGQCR 338



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 65/252 (25%), Positives = 110/252 (43%), Gaps = 63/252 (25%)

Query: 129 VVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWG-HALAQ 187
           V+ + + D+  ++V G +  G LGLG DI   I P ++++L+G+KI  +S+G G H +  
Sbjct: 58  VLYTTVNDE--IFVLGTNCCGCLGLG-DIQSTIEPRKLDSLSGKKIACLSYGSGPHVVLA 114

Query: 188 TEDGKLFGWGYSADGRIGN--LGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEG 245
           T +G++F WG++A  ++GN      L    + +N+                         
Sbjct: 115 TTEGEVFTWGHNAYSQLGNGTTNHGLVPCHISTNLSNK---------------------- 152

Query: 246 MEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGM 305
                              +V+++ACG  HSLVL  +G + + G N  GQ+G        
Sbjct: 153 -------------------QVIEVACGSYHSLVLTSDGEVFAWGYNNSGQVGSGSTANQP 193

Query: 306 FPVDI-----NFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQ--LGRMGP 358
            P  +     N   V+I+ G   S+A+ +      TG    +  WG+N + Q  LG  G 
Sbjct: 194 IPRRVTGCLQNKVIVTIACGQMCSMAVVD------TGE---VFVWGYNGNGQLGLGSSGN 244

Query: 359 DNVPLVVEGLEG 370
              P  +  L+G
Sbjct: 245 QPTPCRIAALQG 256


>gi|337744685|ref|YP_004638847.1| hypothetical protein KNP414_00352 [Paenibacillus mucilaginosus
            KNP414]
 gi|336295874|gb|AEI38977.1| hypothetical protein KNP414_00352 [Paenibacillus mucilaginosus
            KNP414]
          Length = 1224

 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 95/303 (31%), Positives = 135/303 (44%), Gaps = 61/303 (20%)

Query: 54   YEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRV 113
            Y P +V  L ++ T+VSAG  HSLA+ ++G VWA+G N   QLG G   S+ T   P +V
Sbjct: 780  YSPVQVSTL-TNWTAVSAGENHSLALKSDGTVWAFGYNGYGQLGDGTTSSQRT---PVQV 835

Query: 114  EGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEK 173
            +  D   V A  A    S A+  DG++W WG++  G+LG G   T + VP +V  L   K
Sbjct: 836  K--DLTGVVAIAAGKDFSLALKSDGTVWSWGQNTYGELGNGT-TTRSSVPVQVALLTDVK 892

Query: 174  IVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSS 233
             +    G  H +A  +DG +F WGY+ +G +GN     +S+P+ S               
Sbjct: 893  AIAA--GDYHGVALKKDGSVFAWGYNGNGELGNSSTISQSTPVQSG-------------- 936

Query: 234  TIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVY 293
                                       V G++   IA G  H+L L  +G + S G N Y
Sbjct: 937  ---------------------------VTGIK--GIAAGPYHTLALKSDGTVWSWGYNGY 967

Query: 294  GQLGREKQDMGMFPVDINFHPVSISSGLGHSLAICEVRSSNVTGGARGIV-SWGWNRSSQ 352
            GQLG         P  I         GL    +I    + ++  G  GI+ SWG N + Q
Sbjct: 968  GQLGSGNNTSRSVPAAI--------PGLASMASIAAGENQSIAYGNDGILYSWGRNANGQ 1019

Query: 353  LGR 355
            LG 
Sbjct: 1020 LGN 1022



 Score = 68.9 bits (167), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 83/310 (26%), Positives = 135/310 (43%), Gaps = 38/310 (12%)

Query: 75  HSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAI 134
           H++ + ++G VW WG N   QLG G   S +    P +V  L  + + A   +  V  A+
Sbjct: 700 HTMFIKSDGTVWGWGYNGHGQLGTGTSNSTSV---PGKVINLTGMKMIAGGENHTV--AL 754

Query: 135 GDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLF 194
             DG+L  WG +  GQLG     T    P +V  L       VS G  H+LA   DG ++
Sbjct: 755 RSDGTLHTWGYNGYGQLG-DDSTTTRYSPVQVSTL--TNWTAVSAGENHSLALKSDGTVW 811

Query: 195 GWGYSADGRIGNLGKALESSP-----LDSNIDRSSESDQEI---SSSTI----EKAQKLV 242
            +GY+  G++G+   + + +P     L   +  ++  D  +   S  T+    +     +
Sbjct: 812 AFGYNGYGQLGDGTTSSQRTPVQVKDLTGVVAIAAGKDFSLALKSDGTVWSWGQNTYGEL 871

Query: 243 SEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQD 302
             G      +P+  +  L+  V+   IA G  H + L ++G + + G N  G+LG     
Sbjct: 872 GNGTTTRSSVPV--QVALLTDVKA--IAAGDYHGVALKKDGSVFAWGYNGNGELGNSSTI 927

Query: 303 MGMFPVDINFHPVS-ISSGLGHSLAICEVRSSNVTGGARGIV-SWGWNRSSQL--GRMGP 358
               PV      +  I++G  H+LA+           + G V SWG+N   QL  G    
Sbjct: 928 SQSTPVQSGVTGIKGIAAGPYHTLALK----------SDGTVWSWGYNGYGQLGSGNNTS 977

Query: 359 DNVPLVVEGL 368
            +VP  + GL
Sbjct: 978 RSVPAAIPGL 987



 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 40/99 (40%), Positives = 59/99 (59%), Gaps = 8/99 (8%)

Query: 69   VSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASG 128
            ++AG YH+LA+ ++G VW+WG N   QLG G   SR+    P  + GL  +   A+ A+G
Sbjct: 943  IAAGPYHTLALKSDGTVWSWGYNGYGQLGSGNNTSRSV---PAAIPGLASM---ASIAAG 996

Query: 129  VVSS-AIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRV 166
               S A G+DG L+ WG++  GQLG G  + +  VP +V
Sbjct: 997  ENQSIAYGNDGILYSWGRNANGQLGNGTTV-DTNVPHKV 1034



 Score = 41.2 bits (95), Expect = 0.89,   Method: Compositional matrix adjust.
 Identities = 53/217 (24%), Positives = 83/217 (38%), Gaps = 57/217 (26%)

Query: 159 EAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDS 218
            A V +   A  G   + VS    H +    DG ++GWGY+  G++G             
Sbjct: 676 SAPVTAVTSAALGAVPLAVSLLGNHTMFIKSDGTVWGWGYNGHGQLGT------------ 723

Query: 219 NIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLV 278
                       S+ST    + +   GM+                     IA G +H++ 
Sbjct: 724 ----------GTSNSTSVPGKVINLTGMKM--------------------IAGGENHTVA 753

Query: 279 LGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFHP--VSISSGLGHSLAICEVRSSNVT 336
           L  +G L + G N YGQLG +       PV ++      ++S+G  HSLA+         
Sbjct: 754 LRSDGTLHTWGYNGYGQLGDDSTTTRYSPVQVSTLTNWTAVSAGENHSLALK-------- 805

Query: 337 GGARGIV-SWGWNRSSQL--GRMGPDNVPLVVEGLEG 370
             + G V ++G+N   QL  G       P+ V+ L G
Sbjct: 806 --SDGTVWAFGYNGYGQLGDGTTSSQRTPVQVKDLTG 840


>gi|309792077|ref|ZP_07686551.1| regulator of chromosome condensation RCC1 [Oscillochloris
           trichoides DG-6]
 gi|308225884|gb|EFO79638.1| regulator of chromosome condensation RCC1 [Oscillochloris
           trichoides DG6]
          Length = 778

 Score =  105 bits (262), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 107/363 (29%), Positives = 158/363 (43%), Gaps = 45/363 (12%)

Query: 27  TAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVW 86
           +AV+ +G+   G LG  T++         P  V GL S V +++AG+ H+ A+T +G V 
Sbjct: 75  SAVICWGNNEFGQLGDGTTI-----QRNTPVAVNGLSSGVVAIAAGYAHTCALTTSGGVS 129

Query: 87  AWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKS 146
            WG N   QLG G    R T   P +V GL    V A  A    + A+  DG++  WG +
Sbjct: 130 CWGNNESGQLGNGITIQRRT---PVQVAGLSS-GVAAIAAGEYHTCALTTDGAVTCWGSN 185

Query: 147 KRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGN 206
             GQLG G   T+   P +V  L+   +  ++ G  H  A T  G +  WG + +G++G+
Sbjct: 186 GYGQLGDGT-TTQRSTPVQVAGLS-SGVTAITAGGSHTCALTTGGAVTCWGRNGNGQLGD 243

Query: 207 LGKALESSP-----LDSNIDRSSESDQEISSSTIEKAQKL--------VSEGMEKEKYMP 253
                 S+P     L S +   +  D    + T               + +G   E+  P
Sbjct: 244 GTTTQRSTPVNVLGLSSEVAAITAGDVYTCALTTGGGVTCWGANWSGQLGDGTTDERSTP 303

Query: 254 IIWEPFLVEGVE--VVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDIN 311
           +      V G+   V  IA G DH+  +   G +   G N Y QLG         PV +N
Sbjct: 304 VD-----VVGLSSGVTAIAAGNDHTCAITTGGGVSCWGVNQYSQLGDGTTTQQSTPVVVN 358

Query: 312 ---FHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQL--GRMGPDNVPLVVE 366
                  +I++G GH+ A+        TGG  G+  WG N S QL  G       P+ VE
Sbjct: 359 GLSSRAAAIAAGDGHTCAM-------TTGG--GVSCWGRNWSGQLGDGTTTQRRTPMQVE 409

Query: 367 GLE 369
           GL 
Sbjct: 410 GLS 412



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 101/340 (29%), Positives = 147/340 (43%), Gaps = 48/340 (14%)

Query: 56  PTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEG 115
           P  V GL S   +++AG  H+ A+T  G V  WGRN   QLG G    R T   P +VEG
Sbjct: 354 PVVVNGLSSRAAAIAAGDGHTCAMTTGGGVSCWGRNWSGQLGDGTTTQRRT---PMQVEG 410

Query: 116 LDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIV 175
           L    V    A    + A+  +G +  WG ++ GQLG G  I  +  P +VE L+   +V
Sbjct: 411 LSS-GVADITAGDSHTCALSTEGGVTCWGNNESGQLGDGTTIQRS-TPVQVEGLS-SGVV 467

Query: 176 KVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSP-----LDSNIDRSSESDQEI 230
            ++ G  H  A + +G +  WG +  G++GN      S+P     L S +   +  D   
Sbjct: 468 AITAGDSHTCALSTEGGVTCWGGNGSGQLGNGTTTQRSTPVQVEGLSSGVMAITAGDSHT 527

Query: 231 SSSTIEKAQKL--------VSEGMEKEKYMPIIWEPFLVEGVE--VVDIACGFDHSLVLG 280
            + T               + +G   ++ MP+      V G+   V  IA G  H+  L 
Sbjct: 528 CALTTGGGVTCWGGNWYGQLGDGTTTQRNMPVN-----VVGLSSGVAAIAAGGSHTCALS 582

Query: 281 RNGVLLSCGSNVYGQLGREKQDMGMFPVDI---NFHPVSISSGLGHSLAICEVRSSNVTG 337
             G +   G N Y QLG   +     PV +   +    +I++G  H+ A+  + S  VT 
Sbjct: 583 TEGGVTCWGWNTYDQLGDGTRTNHNTPVQVEGLSSGVAAIAAGYAHTCAL--ITSGEVT- 639

Query: 338 GARGIVSWGWNRSSQLG------RMGPDNVPLVVEGLEGE 371
                  WGWN   QLG      RM     P+VV GL  E
Sbjct: 640 ------CWGWNWYGQLGDGTTTQRM----TPVVVNGLSSE 669



 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 105/362 (29%), Positives = 150/362 (41%), Gaps = 45/362 (12%)

Query: 28  AVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWA 87
           AV  +G    G LG  T+          P +V GL S VT+++AG  H+ A+T  GAV  
Sbjct: 178 AVTCWGSNGYGQLGDGTTT-----QRSTPVQVAGLSSGVTAITAGGSHTCALTTGGAVTC 232

Query: 88  WGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSK 147
           WGRN   QLG G    R+T   P  V GL    V A  A  V + A+   G +  WG + 
Sbjct: 233 WGRNGNGQLGDGTTTQRST---PVNVLGLSS-EVAAITAGDVYTCALTTGGGVTCWGANW 288

Query: 148 RGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNL 207
            GQLG G    E   P  V  L+   +  ++ G  H  A T  G +  WG +   ++G+ 
Sbjct: 289 SGQLGDGT-TDERSTPVDVVGLS-SGVTAIAAGNDHTCAITTGGGVSCWGVNQYSQLGDG 346

Query: 208 GKALESSP-----LDSNIDRSSESDQEISSSTIEKAQKL--------VSEGMEKEKYMPI 254
               +S+P     L S     +  D    + T               + +G   ++  P+
Sbjct: 347 TTTQQSTPVVVNGLSSRAAAIAAGDGHTCAMTTGGGVSCWGRNWSGQLGDGTTTQRRTPM 406

Query: 255 IWEPFLVEGVE--VVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDI-- 310
                 VEG+   V DI  G  H+  L   G +   G+N  GQLG         PV +  
Sbjct: 407 -----QVEGLSSGVADITAGDSHTCALSTEGGVTCWGNNESGQLGDGTTIQRSTPVQVEG 461

Query: 311 -NFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGR--MGPDNVPLVVEG 367
            +   V+I++G  H+ A+             G+  WG N S QLG       + P+ VEG
Sbjct: 462 LSSGVVAITAGDSHTCALST---------EGGVTCWGGNGSGQLGNGTTTQRSTPVQVEG 512

Query: 368 LE 369
           L 
Sbjct: 513 LS 514



 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 91/343 (26%), Positives = 152/343 (44%), Gaps = 41/343 (11%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAW 88
           V  +G+   G LG  T++         P +V GL S V +++AG  H+ A++  G V  W
Sbjct: 434 VTCWGNNESGQLGDGTTI-----QRSTPVQVEGLSSGVVAITAGDSHTCALSTEGGVTCW 488

Query: 89  GRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKR 148
           G N   QLG G    R+T   P +VEGL    V A  A    + A+   G +  WG +  
Sbjct: 489 GGNGSGQLGNGTTTQRST---PVQVEGLSS-GVMAITAGDSHTCALTTGGGVTCWGGNWY 544

Query: 149 GQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLG 208
           GQLG G   T+  +P  V  L+   +  ++ G  H  A + +G +  WG++   ++G+  
Sbjct: 545 GQLGDGT-TTQRNMPVNVVGLS-SGVAAIAAGGSHTCALSTEGGVTCWGWNTYDQLGDGT 602

Query: 209 KALESSPLDSNIDRSSESDQEISSSTIEKAQKLVS---------------EGMEKEKYMP 253
           +   ++P+   ++  S     I++        + S               +G   ++  P
Sbjct: 603 RTNHNTPVQ--VEGLSSGVAAIAAGYAHTCALITSGEVTCWGWNWYGQLGDGTTTQRMTP 660

Query: 254 IIWEPFLVEGV--EVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDIN 311
           ++     V G+  EV  I  G+ H+  L   G +   G N Y QLG         P+D++
Sbjct: 661 VV-----VNGLSSEVAAIVAGYAHTCALSTGGGVTCWGWNKYYQLGNGTISQRSIPMDVD 715

Query: 312 FHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLG 354
                +SSG+  +LA  +  +  ++ G  G+  WGW+   QLG
Sbjct: 716 ----GLSSGVA-ALAAGDAHTCGLSTGG-GVTCWGWDVYGQLG 752



 Score = 89.0 bits (219), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 93/323 (28%), Positives = 139/323 (43%), Gaps = 40/323 (12%)

Query: 67  TSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQ--VNVCAA 124
           T ++AG  ++ A+T N AV  WG N   QLG G    R   N P  V GL    V + A 
Sbjct: 59  TPIAAGDAYTCALTTNSAVICWGNNEFGQLGDGTTIQR---NTPVAVNGLSSGVVAIAAG 115

Query: 125 FASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHA 184
           +A    + A+   G +  WG ++ GQLG G  I +   P +V  L+   +  ++ G  H 
Sbjct: 116 YAH---TCALTTSGGVSCWGNNESGQLGNGITI-QRRTPVQVAGLS-SGVAAIAAGEYHT 170

Query: 185 LAQTEDGKLFGWGYSADGRIGNLGKALESSP-----LDSNIDRSSESDQEISSSTIEKAQ 239
            A T DG +  WG +  G++G+      S+P     L S +   +       + T   A 
Sbjct: 171 CALTTDGAVTCWGSNGYGQLGDGTTTQRSTPVQVAGLSSGVTAITAGGSHTCALTTGGAV 230

Query: 240 KL--------VSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSN 291
                     + +G   ++  P+     L    EV  I  G  ++  L   G +   G+N
Sbjct: 231 TCWGRNGNGQLGDGTTTQRSTPV---NVLGLSSEVAAITAGDVYTCALTTGGGVTCWGAN 287

Query: 292 VYGQLGREKQDMGMFPVDI---NFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWN 348
             GQLG    D    PVD+   +    +I++G  H+ AI        TGG  G+  WG N
Sbjct: 288 WSGQLGDGTTDERSTPVDVVGLSSGVTAIAAGNDHTCAI-------TTGG--GVSCWGVN 338

Query: 349 RSSQL--GRMGPDNVPLVVEGLE 369
           + SQL  G     + P+VV GL 
Sbjct: 339 QYSQLGDGTTTQQSTPVVVNGLS 361



 Score = 65.5 bits (158), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 51/165 (30%), Positives = 80/165 (48%), Gaps = 6/165 (3%)

Query: 56  PTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEG 115
           P +V GL S V +++AG+ H+ A+  +G V  WG N   QLG G    R T   P  V G
Sbjct: 609 PVQVEGLSSGVAAIAAGYAHTCALITSGEVTCWGWNWYGQLGDGTTTQRMT---PVVVNG 665

Query: 116 LDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIV 175
           L    V A  A    + A+   G +  WG +K  QLG G  I++  +P  V+ L+   + 
Sbjct: 666 LSS-EVAAIVAGYAHTCALSTGGGVTCWGWNKYYQLGNGT-ISQRSIPMDVDGLS-SGVA 722

Query: 176 KVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNI 220
            ++ G  H    +  G +  WG+   G++G    A  ++P+D  +
Sbjct: 723 ALAAGDAHTCGLSTGGGVTCWGWDVYGQLGVGTIAYRTTPVDVTV 767


>gi|193785714|dbj|BAG51149.1| unnamed protein product [Homo sapiens]
          Length = 551

 Score =  105 bits (262), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 61/176 (34%), Positives = 97/176 (55%), Gaps = 5/176 (2%)

Query: 66  VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAF 125
           V  V+ G YHSL +T++G V+AWG NN  Q+G G+  ++     P+RV G  Q  V    
Sbjct: 154 VIEVACGSYHSLVLTSDGEVFAWGYNNSGQVGSGSTVNQPI---PRRVTGCLQNKVVVTI 210

Query: 126 ASG-VVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHA 184
           A G +   A+ D G ++VWG +  GQLGLG    +   P RV AL G ++ +V+ G+ H 
Sbjct: 211 ACGQMCCMAVVDTGEVYVWGYNGNGQLGLGNSGNQP-TPCRVAALQGIRVQRVACGYAHT 269

Query: 185 LAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQK 240
           L  T++G+++ WG ++ G++G   K+ +S P    +++    +     ST   A K
Sbjct: 270 LVLTDEGQVYAWGANSYGQLGTGNKSNQSYPTPVTVEKDRIIEIAACHSTHTSAAK 325



 Score = 85.5 bits (210), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 70/289 (24%), Positives = 128/289 (44%), Gaps = 25/289 (8%)

Query: 77  LAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNV-CAAFASGVVSSAIG 135
           L  T N  ++  G N    LG G ++S     +P+R++ L+   + C ++ SG       
Sbjct: 59  LYTTVNDEIFVLGTNCCGCLGLGDVQSTI---EPRRLDSLNGKKIACLSYGSGPHIVLAT 115

Query: 136 DDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEA-LAGEKIVKVSFGWGHALAQTEDGKLF 194
            +G ++ WG +   QLG G      +VP  +   L+ +++++V+ G  H+L  T DG++F
Sbjct: 116 TEGEVFTWGHNAYSQLGNGT-TNHGLVPCHISTNLSNKQVIEVACGSYHSLVLTSDGEVF 174

Query: 195 GWGYSADGRIGNLGKALESSP------LDSNIDRSSESDQEISSSTIEKAQKLV------ 242
            WGY+  G++G+     +  P      L + +  +    Q    + ++  +  V      
Sbjct: 175 AWGYNNSGQVGSGSTVNQPIPRRVTGCLQNKVVVTIACGQMCCMAVVDTGEVYVWGYNGN 234

Query: 243 -SEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQ 301
              G+      P       ++G+ V  +ACG+ H+LVL   G + + G+N YGQLG   +
Sbjct: 235 GQLGLGNSGNQPTPCRVAALQGIRVQRVACGYAHTLVLTDEGQVYAWGANSYGQLGTGNK 294

Query: 302 DMGMFPVDINFHPVSISSGLGHSLAICEVRSSNVTGGARG-IVSWGWNR 349
               +P      PV++       +A C    ++      G +  WG  R
Sbjct: 295 SNQSYPT-----PVTVEKDRIIEIAACHSTHTSAAKTQGGHVYMWGQCR 338



 Score = 61.2 bits (147), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 69/270 (25%), Positives = 113/270 (41%), Gaps = 66/270 (24%)

Query: 114 EGLDQVNVCAAFASG---VVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALA 170
           E L  +     F S    V+ + + D+  ++V G +  G LGLG D+   I P R+++L 
Sbjct: 40  EELQLIRQACVFGSAGNEVLYTTVNDE--IFVLGTNCCGCLGLG-DVQSTIEPRRLDSLN 96

Query: 171 GEKIVKVSFGWG-HALAQTEDGKLFGWGYSADGRIGN--LGKALESSPLDSNIDRSSESD 227
           G+KI  +S+G G H +  T +G++F WG++A  ++GN      L    + +N+       
Sbjct: 97  GKKIACLSYGSGPHIVLATTEGEVFTWGHNAYSQLGNGTTNHGLVPCHISTNLSNK---- 152

Query: 228 QEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLS 287
                                                +V+++ACG  HSLVL  +G + +
Sbjct: 153 -------------------------------------QVIEVACGSYHSLVLTSDGEVFA 175

Query: 288 CGSNVYGQLGREKQDMGMFPVDI-----NFHPVSISSGLGHSLAICEVRSSNVTGGARGI 342
            G N  GQ+G         P  +     N   V+I+ G    +A+ +      TG    +
Sbjct: 176 WGYNNSGQVGSGSTVNQPIPRRVTGCLQNKVVVTIACGQMCCMAVVD------TGE---V 226

Query: 343 VSWGWNRSSQ--LGRMGPDNVPLVVEGLEG 370
             WG+N + Q  LG  G    P  V  L+G
Sbjct: 227 YVWGYNGNGQLGLGNSGNQPTPCRVAALQG 256


>gi|410208770|gb|JAA01604.1| regulator of chromosome condensation (RCC1) and BTB (POZ) domain
           containing protein 1 [Pan troglodytes]
 gi|410264080|gb|JAA20006.1| regulator of chromosome condensation (RCC1) and BTB (POZ) domain
           containing protein 1 [Pan troglodytes]
 gi|410293806|gb|JAA25503.1| regulator of chromosome condensation (RCC1) and BTB (POZ) domain
           containing protein 1 [Pan troglodytes]
 gi|410338543|gb|JAA38218.1| regulator of chromosome condensation (RCC1) and BTB (POZ) domain
           containing protein 1 [Pan troglodytes]
          Length = 555

 Score =  105 bits (262), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 61/176 (34%), Positives = 97/176 (55%), Gaps = 5/176 (2%)

Query: 66  VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAF 125
           V  V+ G YHSL +T++G V+AWG NN  Q+G G+  ++     P+RV G  Q  V    
Sbjct: 154 VIEVACGSYHSLVLTSDGEVFAWGYNNSGQVGSGSTVNQPI---PRRVTGCLQNKVVVTI 210

Query: 126 ASG-VVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHA 184
           A G +   A+ D G ++VWG +  GQLGLG    +   P RV AL G ++ +V+ G+ H 
Sbjct: 211 ACGQMCCMAVVDTGEVYVWGYNGNGQLGLGNSGNQP-TPCRVAALQGIRVQRVACGYAHT 269

Query: 185 LAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQK 240
           L  T++G+++ WG ++ G++G   K+ +S P    +++    +     ST   A K
Sbjct: 270 LVLTDEGQVYAWGANSYGQLGTGNKSNQSYPTPVTVEKDRIIEIAACHSTHTSAAK 325



 Score = 85.1 bits (209), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 70/289 (24%), Positives = 128/289 (44%), Gaps = 25/289 (8%)

Query: 77  LAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNV-CAAFASGVVSSAIG 135
           L  T N  ++  G N    LG G ++S     +P+R++ L+   + C ++ SG       
Sbjct: 59  LYTTVNDEIFVLGTNCCGCLGLGDVQSTI---EPRRLDSLNGKKIACLSYGSGPHIVLAT 115

Query: 136 DDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEA-LAGEKIVKVSFGWGHALAQTEDGKLF 194
            +G ++ WG +   QLG G      +VP  +   L+ +++++V+ G  H+L  T DG++F
Sbjct: 116 TEGEVFTWGHNAYSQLGNGT-TNHGLVPCHISTNLSNKQVIEVACGSYHSLVLTSDGEVF 174

Query: 195 GWGYSADGRIGNLGKALESSP------LDSNIDRSSESDQEISSSTIEKAQKLV------ 242
            WGY+  G++G+     +  P      L + +  +    Q    + ++  +  V      
Sbjct: 175 AWGYNNSGQVGSGSTVNQPIPRRVTGCLQNKVVVTIACGQMCCMAVVDTGEVYVWGYNGN 234

Query: 243 -SEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQ 301
              G+      P       ++G+ V  +ACG+ H+LVL   G + + G+N YGQLG   +
Sbjct: 235 GQLGLGNSGNQPTPCRVAALQGIRVQRVACGYAHTLVLTDEGQVYAWGANSYGQLGTGNK 294

Query: 302 DMGMFPVDINFHPVSISSGLGHSLAICEVRSSNVTGGARG-IVSWGWNR 349
               +P      PV++       +A C    ++      G +  WG  R
Sbjct: 295 SNQSYPT-----PVTVEKDRIIEIAACHSTHTSAAKTQGGHVYMWGQCR 338



 Score = 60.8 bits (146), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 69/270 (25%), Positives = 113/270 (41%), Gaps = 66/270 (24%)

Query: 114 EGLDQVNVCAAFASG---VVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALA 170
           E L  +     F S    V+ + + D+  ++V G +  G LGLG D+   I P R+++L 
Sbjct: 40  EELQLIRQACVFGSAGNEVLYTTVNDE--IFVLGTNCCGCLGLG-DVQSTIEPRRLDSLN 96

Query: 171 GEKIVKVSFGWG-HALAQTEDGKLFGWGYSADGRIGN--LGKALESSPLDSNIDRSSESD 227
           G+KI  +S+G G H +  T +G++F WG++A  ++GN      L    + +N+       
Sbjct: 97  GKKIACLSYGSGPHIVLATTEGEVFTWGHNAYSQLGNGTTNHGLVPCHISTNLSNK---- 152

Query: 228 QEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLS 287
                                                +V+++ACG  HSLVL  +G + +
Sbjct: 153 -------------------------------------QVIEVACGSYHSLVLTSDGEVFA 175

Query: 288 CGSNVYGQLGREKQDMGMFPVDI-----NFHPVSISSGLGHSLAICEVRSSNVTGGARGI 342
            G N  GQ+G         P  +     N   V+I+ G    +A+ +      TG    +
Sbjct: 176 WGYNNSGQVGSGSTVNQPIPRRVTGCLQNKVVVTIACGQMCCMAVVD------TGE---V 226

Query: 343 VSWGWNRSSQ--LGRMGPDNVPLVVEGLEG 370
             WG+N + Q  LG  G    P  V  L+G
Sbjct: 227 YVWGYNGNGQLGLGNSGNQPTPCRVAALQG 256


>gi|402901986|ref|XP_003913912.1| PREDICTED: RCC1 and BTB domain-containing protein 2 isoform 1
           [Papio anubis]
          Length = 551

 Score =  105 bits (262), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 61/176 (34%), Positives = 97/176 (55%), Gaps = 5/176 (2%)

Query: 66  VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAF 125
           V  V+ G YHSL +T++G V+AWG NN  Q+G G+  ++     P+RV G  Q  V    
Sbjct: 154 VIEVACGSYHSLVLTSDGEVFAWGYNNSGQVGSGSTVNQPI---PRRVTGCLQNKVVVTI 210

Query: 126 ASG-VVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHA 184
           A G +   A+ D G ++VWG +  GQLGLG    +   P RV AL G ++ +V+ G+ H 
Sbjct: 211 ACGQMCCMAVVDTGEVYVWGYNGNGQLGLGSSGNQP-TPCRVAALQGIRVQRVACGYAHT 269

Query: 185 LAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQK 240
           L  T++G+++ WG ++ G++G   K+ +S P    +++    +     ST   A K
Sbjct: 270 LVLTDEGQVYAWGANSYGQLGTGNKSNQSYPTPVTVEKDRIIEIAACHSTHTSAAK 325



 Score = 81.6 bits (200), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 69/289 (23%), Positives = 128/289 (44%), Gaps = 25/289 (8%)

Query: 77  LAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCA-AFASGVVSSAIG 135
           L  T N  ++  G N    LG G ++S     +P+R++ L    + + ++ SG       
Sbjct: 59  LYTTVNDEIFVLGTNCCGCLGLGDVQSTI---EPRRLDSLSGKKIASLSYGSGPHIVLAT 115

Query: 136 DDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEA-LAGEKIVKVSFGWGHALAQTEDGKLF 194
            +G ++ WG +   QLG G      +VP ++   L+ +++++V+ G  H+L  T DG++F
Sbjct: 116 TEGEVFTWGHNAYSQLGNGT-TNHGLVPCQISTNLSNKQVIEVACGSYHSLVLTSDGEVF 174

Query: 195 GWGYSADGRIGNLGKALESSP------LDSNIDRSSESDQEISSSTIEKAQKLV------ 242
            WGY+  G++G+     +  P      L + +  +    Q    + ++  +  V      
Sbjct: 175 AWGYNNSGQVGSGSTVNQPIPRRVTGCLQNKVVVTIACGQMCCMAVVDTGEVYVWGYNGN 234

Query: 243 -SEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQ 301
              G+      P       ++G+ V  +ACG+ H+LVL   G + + G+N YGQLG   +
Sbjct: 235 GQLGLGSSGNQPTPCRVAALQGIRVQRVACGYAHTLVLTDEGQVYAWGANSYGQLGTGNK 294

Query: 302 DMGMFPVDINFHPVSISSGLGHSLAICEVRSSNVTGGARG-IVSWGWNR 349
               +P      PV++       +A C    ++      G +  WG  R
Sbjct: 295 SNQSYPT-----PVTVEKDRIIEIAACHSTHTSAAKTQGGHVYMWGQCR 338



 Score = 62.8 bits (151), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 69/270 (25%), Positives = 114/270 (42%), Gaps = 66/270 (24%)

Query: 114 EGLDQVNVCAAFASG---VVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALA 170
           E L  +     F S    V+ + + D+  ++V G +  G LGLG D+   I P R+++L+
Sbjct: 40  EELQLIRQACVFGSAGNEVLYTTVNDE--IFVLGTNCCGCLGLG-DVQSTIEPRRLDSLS 96

Query: 171 GEKIVKVSFGWG-HALAQTEDGKLFGWGYSADGRIGN--LGKALESSPLDSNIDRSSESD 227
           G+KI  +S+G G H +  T +G++F WG++A  ++GN      L    + +N+       
Sbjct: 97  GKKIASLSYGSGPHIVLATTEGEVFTWGHNAYSQLGNGTTNHGLVPCQISTNLSNK---- 152

Query: 228 QEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLS 287
                                                +V+++ACG  HSLVL  +G + +
Sbjct: 153 -------------------------------------QVIEVACGSYHSLVLTSDGEVFA 175

Query: 288 CGSNVYGQLGREKQDMGMFPVDI-----NFHPVSISSGLGHSLAICEVRSSNVTGGARGI 342
            G N  GQ+G         P  +     N   V+I+ G    +A+ +      TG    +
Sbjct: 176 WGYNNSGQVGSGSTVNQPIPRRVTGCLQNKVVVTIACGQMCCMAVVD------TGE---V 226

Query: 343 VSWGWNRSSQ--LGRMGPDNVPLVVEGLEG 370
             WG+N + Q  LG  G    P  V  L+G
Sbjct: 227 YVWGYNGNGQLGLGSSGNQPTPCRVAALQG 256


>gi|403303294|ref|XP_003942271.1| PREDICTED: RCC1 and BTB domain-containing protein 2 isoform 2
           [Saimiri boliviensis boliviensis]
          Length = 556

 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 61/176 (34%), Positives = 97/176 (55%), Gaps = 5/176 (2%)

Query: 66  VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAF 125
           V  V+ G YHSL +T++G V+AWG NN  Q+G G+  ++     P+RV G  Q  V    
Sbjct: 159 VIEVACGSYHSLVLTSDGEVFAWGYNNSGQVGSGSTINQPI---PRRVTGCLQNKVVVTI 215

Query: 126 ASG-VVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHA 184
           A G +   A+ D G ++VWG +  GQLGLG    +   P RV AL G ++ +V+ G+ H 
Sbjct: 216 ACGQMCCMAVVDSGEVYVWGYNGNGQLGLGNSGNQP-TPCRVAALQGIRVQRVACGYAHT 274

Query: 185 LAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQK 240
           L  T++G+++ WG ++ G++G   K+ +S P    +++    +     ST   A K
Sbjct: 275 LVLTDEGQVYAWGANSYGQLGTGNKSNQSYPTPVTVEKDRIIEIAACHSTHTSAAK 330



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 70/289 (24%), Positives = 127/289 (43%), Gaps = 25/289 (8%)

Query: 77  LAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNV-CAAFASGVVSSAIG 135
           L  T N  ++  G N    LG G ++S     +P+R++ L    + C ++ SG       
Sbjct: 64  LYTTVNDEIFVLGTNCCGCLGLGDVQSTI---EPRRLDSLSGKKIACLSYGSGPHIVLAT 120

Query: 136 DDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEA-LAGEKIVKVSFGWGHALAQTEDGKLF 194
            +G ++ WG +   QLG G      +VP  +   L+ +++++V+ G  H+L  T DG++F
Sbjct: 121 TEGEVFTWGHNAYSQLGNGT-TNHGLVPCHISTNLSNKQVIEVACGSYHSLVLTSDGEVF 179

Query: 195 GWGYSADGRIGNLGKALESSP------LDSNIDRSSESDQEISSSTIEKAQKLV------ 242
            WGY+  G++G+     +  P      L + +  +    Q    + ++  +  V      
Sbjct: 180 AWGYNNSGQVGSGSTINQPIPRRVTGCLQNKVVVTIACGQMCCMAVVDSGEVYVWGYNGN 239

Query: 243 -SEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQ 301
              G+      P       ++G+ V  +ACG+ H+LVL   G + + G+N YGQLG   +
Sbjct: 240 GQLGLGNSGNQPTPCRVAALQGIRVQRVACGYAHTLVLTDEGQVYAWGANSYGQLGTGNK 299

Query: 302 DMGMFPVDINFHPVSISSGLGHSLAICEVRSSNVTGGARG-IVSWGWNR 349
               +P      PV++       +A C    ++      G +  WG  R
Sbjct: 300 SNQSYPT-----PVTVEKDRIIEIAACHSTHTSAAKTQGGHVYMWGQCR 343



 Score = 62.0 bits (149), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 69/270 (25%), Positives = 113/270 (41%), Gaps = 66/270 (24%)

Query: 114 EGLDQVNVCAAFASG---VVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALA 170
           E L  +     F S    V+ + + D+  ++V G +  G LGLG D+   I P R+++L+
Sbjct: 45  EELQLIRQACVFGSAGNEVLYTTVNDE--IFVLGTNCCGCLGLG-DVQSTIEPRRLDSLS 101

Query: 171 GEKIVKVSFGWG-HALAQTEDGKLFGWGYSADGRIGN--LGKALESSPLDSNIDRSSESD 227
           G+KI  +S+G G H +  T +G++F WG++A  ++GN      L    + +N+       
Sbjct: 102 GKKIACLSYGSGPHIVLATTEGEVFTWGHNAYSQLGNGTTNHGLVPCHISTNLSNK---- 157

Query: 228 QEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLS 287
                                                +V+++ACG  HSLVL  +G + +
Sbjct: 158 -------------------------------------QVIEVACGSYHSLVLTSDGEVFA 180

Query: 288 CGSNVYGQLGREKQDMGMFPVDI-----NFHPVSISSGLGHSLAICEVRSSNVTGGARGI 342
            G N  GQ+G         P  +     N   V+I+ G    +A+       V  G   +
Sbjct: 181 WGYNNSGQVGSGSTINQPIPRRVTGCLQNKVVVTIACGQMCCMAV-------VDSGE--V 231

Query: 343 VSWGWNRSSQ--LGRMGPDNVPLVVEGLEG 370
             WG+N + Q  LG  G    P  V  L+G
Sbjct: 232 YVWGYNGNGQLGLGNSGNQPTPCRVAALQG 261


>gi|379718300|ref|YP_005310431.1| hypothetical protein PM3016_306 [Paenibacillus mucilaginosus 3016]
 gi|378566972|gb|AFC27282.1| hypothetical protein PM3016_306 [Paenibacillus mucilaginosus 3016]
          Length = 1239

 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 95/303 (31%), Positives = 135/303 (44%), Gaps = 61/303 (20%)

Query: 54   YEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRV 113
            Y P +V  L ++ T+VSAG  HSLA+ ++G VWA+G N   QLG G   S+ T   P +V
Sbjct: 795  YSPVQVSTL-TNWTAVSAGENHSLALKSDGTVWAFGYNGYGQLGDGTTSSQRT---PVQV 850

Query: 114  EGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEK 173
            +  D   V A  A    S A+  DG++W WG++  G+LG G   T + VP +V  L   K
Sbjct: 851  K--DLTGVVAIAAGKDFSLALKSDGTVWSWGQNTYGELGNGT-TTRSSVPVQVALLTDVK 907

Query: 174  IVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSS 233
             +    G  H +A  +DG +F WGY+ +G +GN     +S+P+ S               
Sbjct: 908  AIAA--GDYHGVALKKDGSVFAWGYNGNGELGNSSTISQSTPVQSG-------------- 951

Query: 234  TIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVY 293
                                       V G++   IA G  H+L L  +G + S G N Y
Sbjct: 952  ---------------------------VTGIK--GIAAGPYHTLALKSDGTVWSWGYNGY 982

Query: 294  GQLGREKQDMGMFPVDINFHPVSISSGLGHSLAICEVRSSNVTGGARGIV-SWGWNRSSQ 352
            GQLG         P  I         GL    +I    + ++  G  GI+ SWG N + Q
Sbjct: 983  GQLGNGNNTSRSVPAAI--------PGLASIASIAAGENQSIAYGNDGILYSWGRNANGQ 1034

Query: 353  LGR 355
            LG 
Sbjct: 1035 LGN 1037



 Score = 68.9 bits (167), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 83/310 (26%), Positives = 135/310 (43%), Gaps = 38/310 (12%)

Query: 75   HSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAI 134
            H++ + ++G VW WG N   QLG G   S +    P +V  L  + + A   +  V  A+
Sbjct: 715  HTMFIKSDGTVWGWGYNGHGQLGTGTSNSTSV---PGKVINLTGMKMIAGGENHTV--AL 769

Query: 135  GDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLF 194
              DG+L  WG +  GQLG     T    P +V  L       VS G  H+LA   DG ++
Sbjct: 770  RSDGTLHTWGYNGYGQLG-DDSTTTRYSPVQVSTL--TNWTAVSAGENHSLALKSDGTVW 826

Query: 195  GWGYSADGRIGNLGKALESSP-----LDSNIDRSSESDQEI---SSSTI----EKAQKLV 242
             +GY+  G++G+   + + +P     L   +  ++  D  +   S  T+    +     +
Sbjct: 827  AFGYNGYGQLGDGTTSSQRTPVQVKDLTGVVAIAAGKDFSLALKSDGTVWSWGQNTYGEL 886

Query: 243  SEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQD 302
              G      +P+  +  L+  V+   IA G  H + L ++G + + G N  G+LG     
Sbjct: 887  GNGTTTRSSVPV--QVALLTDVKA--IAAGDYHGVALKKDGSVFAWGYNGNGELGNSSTI 942

Query: 303  MGMFPVDINFHPVS-ISSGLGHSLAICEVRSSNVTGGARGIV-SWGWNRSSQL--GRMGP 358
                PV      +  I++G  H+LA+           + G V SWG+N   QL  G    
Sbjct: 943  SQSTPVQSGVTGIKGIAAGPYHTLALK----------SDGTVWSWGYNGYGQLGNGNNTS 992

Query: 359  DNVPLVVEGL 368
             +VP  + GL
Sbjct: 993  RSVPAAIPGL 1002



 Score = 65.1 bits (157), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 40/99 (40%), Positives = 59/99 (59%), Gaps = 8/99 (8%)

Query: 69   VSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASG 128
            ++AG YH+LA+ ++G VW+WG N   QLG G   SR+    P  + GL  +   A+ A+G
Sbjct: 958  IAAGPYHTLALKSDGTVWSWGYNGYGQLGNGNNTSRSV---PAAIPGLASI---ASIAAG 1011

Query: 129  VVSS-AIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRV 166
               S A G+DG L+ WG++  GQLG G  + +  VP +V
Sbjct: 1012 ENQSIAYGNDGILYSWGRNANGQLGNGTTV-DTNVPHKV 1049



 Score = 40.8 bits (94), Expect = 1.00,   Method: Compositional matrix adjust.
 Identities = 53/217 (24%), Positives = 83/217 (38%), Gaps = 57/217 (26%)

Query: 159 EAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDS 218
            A V +   A  G   + VS    H +    DG ++GWGY+  G++G             
Sbjct: 691 SAPVTAVTSAALGAVPLAVSLLGNHTMFIKSDGTVWGWGYNGHGQLGT------------ 738

Query: 219 NIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLV 278
                       S+ST    + +   GM+                     IA G +H++ 
Sbjct: 739 ----------GTSNSTSVPGKVINLTGMKM--------------------IAGGENHTVA 768

Query: 279 LGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFHP--VSISSGLGHSLAICEVRSSNVT 336
           L  +G L + G N YGQLG +       PV ++      ++S+G  HSLA+         
Sbjct: 769 LRSDGTLHTWGYNGYGQLGDDSTTTRYSPVQVSTLTNWTAVSAGENHSLALK-------- 820

Query: 337 GGARGIV-SWGWNRSSQL--GRMGPDNVPLVVEGLEG 370
             + G V ++G+N   QL  G       P+ V+ L G
Sbjct: 821 --SDGTVWAFGYNGYGQLGDGTTSSQRTPVQVKDLTG 855


>gi|47208715|emb|CAF91945.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 380

 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 89/275 (32%), Positives = 128/275 (46%), Gaps = 33/275 (12%)

Query: 59  VPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQ----LGRGALESRATWNDPKRVE 114
           V  L + V SV+AG  H+LAVT++G V+ WGR    Q    LG  ++        P  V 
Sbjct: 128 VESLKAAVVSVAAGLRHALAVTDSGRVYQWGRGLLSQAKRTLGPSSVPPHLGSTVPSPVP 187

Query: 115 GLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKI 174
           GLDQ       A  +    + +DG L++WG +K GQL        + +P +   L GE++
Sbjct: 188 GLDQKTSRMVTAGSMHCVCLTEDGDLFLWGSNKHGQLVSRDPFLSSAMPVKRSLLGGERV 247

Query: 175 VKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSST 234
             V  GW H +AQTE G++F WG    G  G LG+   +S       RS ES        
Sbjct: 248 GGVWSGWTHIIAQTETGRVFTWGR---GNYGQLGRPAPTS-------RSPES-------- 289

Query: 235 IEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYG 294
                +  ++G   E  +P   E   ++G     IACG +H+L +   G LLS G N +G
Sbjct: 290 -----RSTTDGANLEAGLPA--EVKALQG--ATQIACGSEHNLAI-LAGRLLSWGWNEHG 339

Query: 295 QLGR-EKQDMGMFPVDINFHPVSISSGLGHSLAIC 328
             G     D+    +     P+ I  G GHS+A+C
Sbjct: 340 MCGDGSHTDVRQPQLVPALRPLLIGCGAGHSMAVC 374



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 80/332 (24%), Positives = 124/332 (37%), Gaps = 64/332 (19%)

Query: 66  VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGAL-ESRATWNDPKRVEGLDQVNVCAA 124
           V  V+ G  H+  +T +G V+  G+N+  QLG G L +  A    P     +  V     
Sbjct: 32  VRVVAGGGGHTAVITGDGEVFVCGQNHRGQLGLGHLADISALQRCPSLTHTVTNVTCGWD 91

Query: 125 FASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHA 184
           F     +  + D G +   G +  GQLG+G+          VE+L    +V V+ G  HA
Sbjct: 92  F-----TLFLTDSGRVLSCGSNAFGQLGIGQKPNFTAEVQVVESLKA-AVVSVAAGLRHA 145

Query: 185 LAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSES-----DQEISSSTI---- 235
           LA T+ G+++ WG    G +    + L  S +  ++  +  S     DQ+ S        
Sbjct: 146 LAVTDSGRVYQWGR---GLLSQAKRTLGPSSVPPHLGSTVPSPVPGLDQKTSRMVTAGSM 202

Query: 236 ----------------EKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVL 279
                            K  +LVS        MP+  +  L+ G  V  +  G+ H +  
Sbjct: 203 HCVCLTEDGDLFLWGSNKHGQLVSRDPFLSSAMPV--KRSLLGGERVGGVWSGWTHIIAQ 260

Query: 280 GRNGVLLSCGSNVYGQLGREKQDM---------------GMFPVDINF--HPVSISSGLG 322
              G + + G   YGQLGR                       P ++        I+ G  
Sbjct: 261 TETGRVFTWGRGNYGQLGRPAPTSRSPESRSTTDGANLEAGLPAEVKALQGATQIACGSE 320

Query: 323 HSLAICEVRSSNVTGGARGIVSWGWNRSSQLG 354
           H+LAI   R          ++SWGWN     G
Sbjct: 321 HNLAILAGR----------LLSWGWNEHGMCG 342


>gi|402901988|ref|XP_003913913.1| PREDICTED: RCC1 and BTB domain-containing protein 2 isoform 2
           [Papio anubis]
 gi|355754693|gb|EHH58594.1| hypothetical protein EGM_08474 [Macaca fascicularis]
          Length = 556

 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 61/176 (34%), Positives = 97/176 (55%), Gaps = 5/176 (2%)

Query: 66  VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAF 125
           V  V+ G YHSL +T++G V+AWG NN  Q+G G+  ++     P+RV G  Q  V    
Sbjct: 159 VIEVACGSYHSLVLTSDGEVFAWGYNNSGQVGSGSTVNQPI---PRRVTGCLQNKVVVTI 215

Query: 126 ASG-VVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHA 184
           A G +   A+ D G ++VWG +  GQLGLG    +   P RV AL G ++ +V+ G+ H 
Sbjct: 216 ACGQMCCMAVVDTGEVYVWGYNGNGQLGLGSSGNQP-TPCRVAALQGIRVQRVACGYAHT 274

Query: 185 LAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQK 240
           L  T++G+++ WG ++ G++G   K+ +S P    +++    +     ST   A K
Sbjct: 275 LVLTDEGQVYAWGANSYGQLGTGNKSNQSYPTPVTVEKDRIIEIAACHSTHTSAAK 330



 Score = 81.3 bits (199), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 69/289 (23%), Positives = 128/289 (44%), Gaps = 25/289 (8%)

Query: 77  LAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCA-AFASGVVSSAIG 135
           L  T N  ++  G N    LG G ++S     +P+R++ L    + + ++ SG       
Sbjct: 64  LYTTVNDEIFVLGTNCCGCLGLGDVQSTI---EPRRLDSLSGKKIASLSYGSGPHIVLAT 120

Query: 136 DDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEA-LAGEKIVKVSFGWGHALAQTEDGKLF 194
            +G ++ WG +   QLG G      +VP ++   L+ +++++V+ G  H+L  T DG++F
Sbjct: 121 TEGEVFTWGHNAYSQLGNGT-TNHGLVPCQISTNLSNKQVIEVACGSYHSLVLTSDGEVF 179

Query: 195 GWGYSADGRIGNLGKALESSP------LDSNIDRSSESDQEISSSTIEKAQKLV------ 242
            WGY+  G++G+     +  P      L + +  +    Q    + ++  +  V      
Sbjct: 180 AWGYNNSGQVGSGSTVNQPIPRRVTGCLQNKVVVTIACGQMCCMAVVDTGEVYVWGYNGN 239

Query: 243 -SEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQ 301
              G+      P       ++G+ V  +ACG+ H+LVL   G + + G+N YGQLG   +
Sbjct: 240 GQLGLGSSGNQPTPCRVAALQGIRVQRVACGYAHTLVLTDEGQVYAWGANSYGQLGTGNK 299

Query: 302 DMGMFPVDINFHPVSISSGLGHSLAICEVRSSNVTGGARG-IVSWGWNR 349
               +P      PV++       +A C    ++      G +  WG  R
Sbjct: 300 SNQSYPT-----PVTVEKDRIIEIAACHSTHTSAAKTQGGHVYMWGQCR 343



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 69/270 (25%), Positives = 114/270 (42%), Gaps = 66/270 (24%)

Query: 114 EGLDQVNVCAAFASG---VVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALA 170
           E L  +     F S    V+ + + D+  ++V G +  G LGLG D+   I P R+++L+
Sbjct: 45  EELQLIRQACVFGSAGNEVLYTTVNDE--IFVLGTNCCGCLGLG-DVQSTIEPRRLDSLS 101

Query: 171 GEKIVKVSFGWG-HALAQTEDGKLFGWGYSADGRIGN--LGKALESSPLDSNIDRSSESD 227
           G+KI  +S+G G H +  T +G++F WG++A  ++GN      L    + +N+       
Sbjct: 102 GKKIASLSYGSGPHIVLATTEGEVFTWGHNAYSQLGNGTTNHGLVPCQISTNLSNK---- 157

Query: 228 QEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLS 287
                                                +V+++ACG  HSLVL  +G + +
Sbjct: 158 -------------------------------------QVIEVACGSYHSLVLTSDGEVFA 180

Query: 288 CGSNVYGQLGREKQDMGMFPVDI-----NFHPVSISSGLGHSLAICEVRSSNVTGGARGI 342
            G N  GQ+G         P  +     N   V+I+ G    +A+ +      TG    +
Sbjct: 181 WGYNNSGQVGSGSTVNQPIPRRVTGCLQNKVVVTIACGQMCCMAVVD------TGE---V 231

Query: 343 VSWGWNRSSQ--LGRMGPDNVPLVVEGLEG 370
             WG+N + Q  LG  G    P  V  L+G
Sbjct: 232 YVWGYNGNGQLGLGSSGNQPTPCRVAALQG 261


>gi|332841362|ref|XP_003314204.1| PREDICTED: RCC1 and BTB domain-containing protein 2, partial [Pan
           troglodytes]
          Length = 552

 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 61/176 (34%), Positives = 97/176 (55%), Gaps = 5/176 (2%)

Query: 66  VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAF 125
           V  V+ G YHSL +T++G V+AWG NN  Q+G G+  ++     P+RV G  Q  V    
Sbjct: 157 VIEVACGSYHSLVLTSDGEVFAWGYNNSGQVGSGSTVNQPI---PRRVTGCLQNKVVVTI 213

Query: 126 ASG-VVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHA 184
           A G +   A+ D G ++VWG +  GQLGLG    +   P RV AL G ++ +V+ G+ H 
Sbjct: 214 ACGQMCCMAVVDTGEVYVWGYNGNGQLGLGNSGNQP-TPCRVAALQGIRVQRVACGYAHT 272

Query: 185 LAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQK 240
           L  T++G+++ WG ++ G++G   K+ +S P    +++    +     ST   A K
Sbjct: 273 LVLTDEGQVYAWGANSYGQLGTGNKSNQSYPTPVTVEKDRIIEIAACHSTHTSAAK 328



 Score = 85.9 bits (211), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 70/289 (24%), Positives = 128/289 (44%), Gaps = 25/289 (8%)

Query: 77  LAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNV-CAAFASGVVSSAIG 135
           L  T N  ++  G N    LG G ++S     +P+R++ L+   + C ++ SG       
Sbjct: 62  LYTTVNDEIFVLGTNCCGCLGLGDVQSTI---EPRRLDSLNGKKIACLSYGSGPHIVLAT 118

Query: 136 DDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEA-LAGEKIVKVSFGWGHALAQTEDGKLF 194
            +G ++ WG +   QLG G      +VP  +   L+ +++++V+ G  H+L  T DG++F
Sbjct: 119 TEGEVFTWGHNAYSQLGNGT-TNHGLVPCHISTNLSNKQVIEVACGSYHSLVLTSDGEVF 177

Query: 195 GWGYSADGRIGNLGKALESSP------LDSNIDRSSESDQEISSSTIEKAQKLV------ 242
            WGY+  G++G+     +  P      L + +  +    Q    + ++  +  V      
Sbjct: 178 AWGYNNSGQVGSGSTVNQPIPRRVTGCLQNKVVVTIACGQMCCMAVVDTGEVYVWGYNGN 237

Query: 243 -SEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQ 301
              G+      P       ++G+ V  +ACG+ H+LVL   G + + G+N YGQLG   +
Sbjct: 238 GQLGLGNSGNQPTPCRVAALQGIRVQRVACGYAHTLVLTDEGQVYAWGANSYGQLGTGNK 297

Query: 302 DMGMFPVDINFHPVSISSGLGHSLAICEVRSSNVTGGARG-IVSWGWNR 349
               +P      PV++       +A C    ++      G +  WG  R
Sbjct: 298 SNQSYPT-----PVTVEKDRIIEIAACHSTHTSAAKTQGGHVYMWGQCR 341



 Score = 61.6 bits (148), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 67/270 (24%), Positives = 116/270 (42%), Gaps = 63/270 (23%)

Query: 111 KRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALA 170
           + ++ + Q  V  +  + V+ + + D+  ++V G +  G LGLG D+   I P R+++L 
Sbjct: 43  EELQLIRQACVFGSAGNEVLYTTVNDE--IFVLGTNCCGCLGLG-DVQSTIEPRRLDSLN 99

Query: 171 GEKIVKVSFGWG-HALAQTEDGKLFGWGYSADGRIGN--LGKALESSPLDSNIDRSSESD 227
           G+KI  +S+G G H +  T +G++F WG++A  ++GN      L    + +N+       
Sbjct: 100 GKKIACLSYGSGPHIVLATTEGEVFTWGHNAYSQLGNGTTNHGLVPCHISTNLSNK---- 155

Query: 228 QEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLS 287
                                                +V+++ACG  HSLVL  +G + +
Sbjct: 156 -------------------------------------QVIEVACGSYHSLVLTSDGEVFA 178

Query: 288 CGSNVYGQLGREKQDMGMFPVDI-----NFHPVSISSGLGHSLAICEVRSSNVTGGARGI 342
            G N  GQ+G         P  +     N   V+I+ G    +A+ +      TG    +
Sbjct: 179 WGYNNSGQVGSGSTVNQPIPRRVTGCLQNKVVVTIACGQMCCMAVVD------TGE---V 229

Query: 343 VSWGWNRSSQ--LGRMGPDNVPLVVEGLEG 370
             WG+N + Q  LG  G    P  V  L+G
Sbjct: 230 YVWGYNGNGQLGLGNSGNQPTPCRVAALQG 259


>gi|386720863|ref|YP_006187188.1| hypothetical protein B2K_01550 [Paenibacillus mucilaginosus K02]
 gi|384087987|gb|AFH59423.1| hypothetical protein B2K_01550 [Paenibacillus mucilaginosus K02]
          Length = 1164

 Score =  105 bits (261), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 95/303 (31%), Positives = 135/303 (44%), Gaps = 61/303 (20%)

Query: 54  YEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRV 113
           Y P +V  L ++ T+VSAG  HSLA+ ++G VWA+G N   QLG G   S+ T   P +V
Sbjct: 720 YSPVQVSTL-TNWTAVSAGENHSLALKSDGTVWAFGYNGYGQLGDGTTSSQRT---PVQV 775

Query: 114 EGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEK 173
           +  D   V A  A    S A+  DG++W WG++  G+LG G   T + VP +V  L   K
Sbjct: 776 K--DLTGVVAIAAGKDFSLALKSDGTVWSWGQNTYGELGNGT-TTRSSVPVQVALLTDVK 832

Query: 174 IVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSS 233
            +    G  H +A  +DG +F WGY+ +G +GN     +S+P+ S               
Sbjct: 833 AIAA--GDYHGVALKKDGSVFAWGYNGNGELGNSSTISQSTPVQSG-------------- 876

Query: 234 TIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVY 293
                                      V G++   IA G  H+L L  +G + S G N Y
Sbjct: 877 ---------------------------VTGIK--GIAAGPYHTLALKSDGTVWSWGYNGY 907

Query: 294 GQLGREKQDMGMFPVDINFHPVSISSGLGHSLAICEVRSSNVTGGARGIV-SWGWNRSSQ 352
           GQLG         P  I         GL    +I    + ++  G  GI+ SWG N + Q
Sbjct: 908 GQLGNGNNTSRSVPAAI--------PGLASIASIAAGENQSIAYGNDGILYSWGRNANGQ 959

Query: 353 LGR 355
           LG 
Sbjct: 960 LGN 962



 Score = 68.9 bits (167), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 83/310 (26%), Positives = 135/310 (43%), Gaps = 38/310 (12%)

Query: 75  HSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAI 134
           H++ + ++G VW WG N   QLG G   S +    P +V  L  + + A   +  V  A+
Sbjct: 640 HTMFIKSDGTVWGWGYNGHGQLGTGTSNSTSV---PGKVINLTGMKMIAGGENHTV--AL 694

Query: 135 GDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLF 194
             DG+L  WG +  GQLG     T    P +V  L       VS G  H+LA   DG ++
Sbjct: 695 RSDGTLHTWGYNGYGQLG-DDSTTTRYSPVQVSTL--TNWTAVSAGENHSLALKSDGTVW 751

Query: 195 GWGYSADGRIGNLGKALESSP-----LDSNIDRSSESDQEI---SSSTI----EKAQKLV 242
            +GY+  G++G+   + + +P     L   +  ++  D  +   S  T+    +     +
Sbjct: 752 AFGYNGYGQLGDGTTSSQRTPVQVKDLTGVVAIAAGKDFSLALKSDGTVWSWGQNTYGEL 811

Query: 243 SEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQD 302
             G      +P+  +  L+  V+   IA G  H + L ++G + + G N  G+LG     
Sbjct: 812 GNGTTTRSSVPV--QVALLTDVKA--IAAGDYHGVALKKDGSVFAWGYNGNGELGNSSTI 867

Query: 303 MGMFPVDINFHPVS-ISSGLGHSLAICEVRSSNVTGGARGIV-SWGWNRSSQL--GRMGP 358
               PV      +  I++G  H+LA+           + G V SWG+N   QL  G    
Sbjct: 868 SQSTPVQSGVTGIKGIAAGPYHTLALK----------SDGTVWSWGYNGYGQLGNGNNTS 917

Query: 359 DNVPLVVEGL 368
            +VP  + GL
Sbjct: 918 RSVPAAIPGL 927



 Score = 65.1 bits (157), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 40/99 (40%), Positives = 59/99 (59%), Gaps = 8/99 (8%)

Query: 69  VSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASG 128
           ++AG YH+LA+ ++G VW+WG N   QLG G   SR+    P  + GL  +   A+ A+G
Sbjct: 883 IAAGPYHTLALKSDGTVWSWGYNGYGQLGNGNNTSRSV---PAAIPGLASI---ASIAAG 936

Query: 129 VVSS-AIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRV 166
              S A G+DG L+ WG++  GQLG G  + +  VP +V
Sbjct: 937 ENQSIAYGNDGILYSWGRNANGQLGNGTTV-DTNVPHKV 974



 Score = 41.2 bits (95), Expect = 0.89,   Method: Compositional matrix adjust.
 Identities = 53/217 (24%), Positives = 83/217 (38%), Gaps = 57/217 (26%)

Query: 159 EAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDS 218
            A V +   A  G   + VS    H +    DG ++GWGY+  G++G             
Sbjct: 616 SAPVTAVTSAALGAVPLAVSLLGNHTMFIKSDGTVWGWGYNGHGQLGT------------ 663

Query: 219 NIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLV 278
                       S+ST    + +   GM+                     IA G +H++ 
Sbjct: 664 ----------GTSNSTSVPGKVINLTGMKM--------------------IAGGENHTVA 693

Query: 279 LGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFHP--VSISSGLGHSLAICEVRSSNVT 336
           L  +G L + G N YGQLG +       PV ++      ++S+G  HSLA+         
Sbjct: 694 LRSDGTLHTWGYNGYGQLGDDSTTTRYSPVQVSTLTNWTAVSAGENHSLALK-------- 745

Query: 337 GGARGIV-SWGWNRSSQL--GRMGPDNVPLVVEGLEG 370
             + G V ++G+N   QL  G       P+ V+ L G
Sbjct: 746 --SDGTVWAFGYNGYGQLGDGTTSSQRTPVQVKDLTG 780


>gi|355715932|gb|AES05447.1| regulator of chromosome condensation and BTB domain containing
           protein 2 [Mustela putorius furo]
          Length = 344

 Score =  105 bits (261), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 63/189 (33%), Positives = 102/189 (53%), Gaps = 9/189 (4%)

Query: 65  DVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAA 124
            VT V+ G YHSL +T++G V+AWG NN  Q+G G+  ++     P+RV G  Q  V   
Sbjct: 82  QVTEVACGSYHSLVLTSDGEVFAWGYNNSGQVGSGSTANQLI---PRRVTGCLQNKVVVN 138

Query: 125 FASG-VVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGH 183
            A G + S A+ + G ++VWG +  GQLGLG    +   P R+ AL G ++ +V+ G+ H
Sbjct: 139 IACGQMCSMAVVNTGEVYVWGYNGNGQLGLGSSGNQP-TPCRIAALQGIRVQRVACGYAH 197

Query: 184 ALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVS 243
            L  T++G+++ WG ++ G++G   K+ +S P    +    E D+ I  +    A    +
Sbjct: 198 TLVLTDEGQVYAWGANSYGQLGTGNKSNQSYPAPVVV----EKDRIIEIAACHSAHTSAA 253

Query: 244 EGMEKEKYM 252
           +      YM
Sbjct: 254 KTQGGHVYM 262



 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 60/230 (26%), Positives = 108/230 (46%), Gaps = 19/230 (8%)

Query: 96  LGRGALESRATWNDPKRVEGLDQVNV-CAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLG 154
           LG G ++S     +P+R+E L+   + C ++ SG        +G ++ WG +   QLG G
Sbjct: 7   LGLGDVQSTI---EPRRLESLNGKKIACLSYGSGPHIVLATTEGEVFTWGHNAYSQLGNG 63

Query: 155 KDITEAIVPSRVEA-LAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALES 213
                 +VP  +   L+ +++ +V+ G  H+L  T DG++F WGY+  G++G+   A + 
Sbjct: 64  T-TNHGLVPCHISTNLSNKQVTEVACGSYHSLVLTSDGEVFAWGYNNSGQVGSGSTANQL 122

Query: 214 SP------LDSNIDRSSESDQEISSSTIEKAQKLV-------SEGMEKEKYMPIIWEPFL 260
            P      L + +  +    Q  S + +   +  V         G+      P       
Sbjct: 123 IPRRVTGCLQNKVVVNIACGQMCSMAVVNTGEVYVWGYNGNGQLGLGSSGNQPTPCRIAA 182

Query: 261 VEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDI 310
           ++G+ V  +ACG+ H+LVL   G + + G+N YGQLG   +    +P  +
Sbjct: 183 LQGIRVQRVACGYAHTLVLTDEGQVYAWGANSYGQLGTGNKSNQSYPAPV 232



 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 62/232 (26%), Positives = 97/232 (41%), Gaps = 61/232 (26%)

Query: 149 GQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWG-HALAQTEDGKLFGWGYSADGRIGN- 206
           G LGLG D+   I P R+E+L G+KI  +S+G G H +  T +G++F WG++A  ++GN 
Sbjct: 5   GCLGLG-DVQSTIEPRRLESLNGKKIACLSYGSGPHIVLATTEGEVFTWGHNAYSQLGNG 63

Query: 207 -LGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVE 265
                L    + +N+                                            +
Sbjct: 64  TTNHGLVPCHISTNLSNK-----------------------------------------Q 82

Query: 266 VVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDI-----NFHPVSISSG 320
           V ++ACG  HSLVL  +G + + G N  GQ+G       + P  +     N   V+I+ G
Sbjct: 83  VTEVACGSYHSLVLTSDGEVFAWGYNNSGQVGSGSTANQLIPRRVTGCLQNKVVVNIACG 142

Query: 321 LGHSLAICEVRSSNVTGGARGIVSWGWNRSSQ--LGRMGPDNVPLVVEGLEG 370
              S+A+       V  G   +  WG+N + Q  LG  G    P  +  L+G
Sbjct: 143 QMCSMAV-------VNTGE--VYVWGYNGNGQLGLGSSGNQPTPCRIAALQG 185


>gi|379318630|pdb|4DNU|A Chain A, Crystal Structure Of The W285a Mutant Of Uvb-Resistance
           Protein Uvr8
          Length = 372

 Score =  105 bits (261), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 98/353 (27%), Positives = 152/353 (43%), Gaps = 65/353 (18%)

Query: 23  SASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPS-DVTSVSAGHYHSLAVTN 81
           S SG  V S+G G  G LG      G   D + P  +  L    +  ++ G  H LAVT 
Sbjct: 74  SQSGXEVYSWGWGDFGRLG-----HGNSSDLFTPLPIKALHGIRIKQIACGDSHCLAVTX 128

Query: 82  NGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLW 141
            G V +WGRN   QLG G  E       P++++  + + +    A    ++A+ +DG L+
Sbjct: 129 EGEVQSWGRNQNGQLGLGDTEDSLV---PQKIQAFEGIRIKXVAAGAEHTAAVTEDGDLY 185

Query: 142 VWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSAD 201
            WG  + G LGLG D T+ +VP RV +  GEK   V+ GW H ++ +  G L+ +G+S  
Sbjct: 186 GWGWGRYGNLGLG-DRTDRLVPERVTSTGGEKXSXVACGWRHTISVSYSGALYTYGWSKY 244

Query: 202 GRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLV 261
           G++G+    LE   +   +       + +S+S I +                        
Sbjct: 245 GQLGH--GDLEDHLIPHKL-------EALSNSFISQ------------------------ 271

Query: 262 EGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINF----HPVSI 317
                  I+ G  H+  L  +G L   G N +GQ+G         PV + F      V +
Sbjct: 272 -------ISGGARHTXALTSDGKLYGWGWNKFGQVGVGNNLDQCSPVQVRFPDDQKVVQV 324

Query: 318 SSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQL--GRMGPDNVPLVVEGL 368
           S G  H+LA+ E  +         + +WG   + QL  G     N P ++E L
Sbjct: 325 SCGWRHTLAVTERNN---------VFAWGRGTNGQLGIGESVDRNFPKIIEAL 368



 Score = 88.6 bits (218), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 91/356 (25%), Positives = 137/356 (38%), Gaps = 116/356 (32%)

Query: 59  VPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRAT------------ 106
           V   P  V  +SAG  HS+A+ +   V +WGR  + QLG G  E R +            
Sbjct: 1   VTAPPRKVLIISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQI 60

Query: 107 ------------------------WND--------------PKRVEGLDQVNVCAAFASG 128
                                   W D              P  ++ L  + +       
Sbjct: 61  VSVTCGADHTVAYSQSGXEVYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIACGD 120

Query: 129 VVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQT 188
               A+  +G +  WG+++ GQLGLG D  +++VP +++A  G +I  V+ G  H  A T
Sbjct: 121 SHCLAVTXEGEVQSWGRNQNGQLGLG-DTEDSLVPQKIQAFEGIRIKXVAAGAEHTAAVT 179

Query: 189 EDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEK 248
           EDG L+GWG+   GR GNLG       L    DR                +++ S G EK
Sbjct: 180 EDGDLYGWGW---GRYGNLG-------LGDRTDRLV-------------PERVTSTGGEK 216

Query: 249 EKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPV 308
                               +ACG+ H++ +  +G L + G + YGQLG    +  + P 
Sbjct: 217 XSX-----------------VACGWRHTISVSYSGALYTYGWSKYGQLGHGDLEDHLIP- 258

Query: 309 DINFHPVSISSGLGHSL-AICEVRSSNVTGGAR---------GIVSWGWNRSSQLG 354
                         H L A+     S ++GGAR          +  WGWN+  Q+G
Sbjct: 259 --------------HKLEALSNSFISQISGGARHTXALTSDGKLYGWGWNKFGQVG 300



 Score = 79.0 bits (193), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 61/197 (30%), Positives = 97/197 (49%), Gaps = 17/197 (8%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTS-VSAGHYHSLAVTNNGAVWA 87
           +  +G G  G LGL     G   D   P RV     +  S V+ G  H+++V+ +GA++ 
Sbjct: 184 LYGWGWGRYGNLGL-----GDRTDRLVPERVTSTGGEKXSXVACGWRHTISVSYSGALYT 238

Query: 88  WGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSK 147
           +G +   QLG G LE       P ++E L    +         + A+  DG L+ WG +K
Sbjct: 239 YGWSKYGQLGHGDLEDHLI---PHKLEALSNSFISQISGGARHTXALTSDGKLYGWGWNK 295

Query: 148 RGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIG-- 205
            GQ+G+G ++ +   P +V     +K+V+VS GW H LA TE   +F WG   +G++G  
Sbjct: 296 FGQVGVGNNLDQC-SPVQVRFPDDQKVVQVSCGWRHTLAVTERNNVFAWGRGTNGQLGIG 354

Query: 206 -----NLGKALESSPLD 217
                N  K +E+  +D
Sbjct: 355 ESVDRNFPKIIEALSVD 371


>gi|431911479|gb|ELK13685.1| Putative E3 ubiquitin-protein ligase HERC6 [Pteropus alecto]
          Length = 1010

 Score =  105 bits (261), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 82/275 (29%), Positives = 127/275 (46%), Gaps = 53/275 (19%)

Query: 28  AVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTS-----VSAGHYHSLAVTNN 82
            V S GD +QG LG         G   E    PGL   + +     VS G  HSLAV + 
Sbjct: 41  TVHSCGDNTQGQLGR-------RGKPREER--PGLIKALETLLVGLVSCGKEHSLAVCHK 91

Query: 83  GAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWV 142
           G V+AWG  +E QLG    E +     PK+++ L  + +         S A+ +DG ++ 
Sbjct: 92  GRVFAWGAGSEGQLG--IEECKEKIFTPKKIKTLTGIKIIQVSCGHYHSLALSEDGQVYS 149

Query: 143 WGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADG 202
           WGK+ +GQLGLGK+      P RV +L G  + +V+ G  H+ A +  G  FGWG +  G
Sbjct: 150 WGKNSQGQLGLGKEFPSQASPQRVRSLEGIPLAQVAAGGAHSFALSLSGTSFGWGSNNTG 209

Query: 203 RIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVE 262
           ++   G    ++P+                                ++Y P       ++
Sbjct: 210 QLALSGN---NTPV--------------------------------QRYKP--HSIGALK 232

Query: 263 GVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLG 297
            ++V+ I+CG++H+ VL +NG + + G N  GQLG
Sbjct: 233 SLDVIYISCGYEHTAVLTQNGKVFTFGDNSCGQLG 267



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 63/240 (26%), Positives = 102/240 (42%), Gaps = 71/240 (29%)

Query: 137 DGSLWVWGKSKRGQLGL-GKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFG 195
           DG++   G + +GQLG  GK   E   P  ++AL    +  VS G  H+LA    G++F 
Sbjct: 39  DGTVHSCGDNTQGQLGRRGKPREER--PGLIKALETLLVGLVSCGKEHSLAVCHKGRVFA 96

Query: 196 WGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPII 255
           WG  ++G++G                                    + E  EK      I
Sbjct: 97  WGAGSEGQLG------------------------------------IEECKEK------I 114

Query: 256 WEPFLVE---GVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINF 312
           + P  ++   G++++ ++CG  HSL L  +G + S G N  GQLG  K+    FP   + 
Sbjct: 115 FTPKKIKTLTGIKIIQVSCGHYHSLALSEDGQVYSWGKNSQGQLGLGKE----FPSQASP 170

Query: 313 HPV---------SISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPDNVPL 363
             V          +++G  HS A+      +++G + G   WG N + QL   G +N P+
Sbjct: 171 QRVRSLEGIPLAQVAAGGAHSFAL------SLSGTSFG---WGSNNTGQLALSG-NNTPV 220



 Score = 47.8 bits (112), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 44/161 (27%), Positives = 70/161 (43%), Gaps = 11/161 (6%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRV---PGLPSDVTSVSAGHYHSLAVTNNGAV 85
           V S+G  SQG LGL             P RV    G+P  +  V+AG  HS A++ +G  
Sbjct: 147 VYSWGKNSQGQLGLGKEFPSQAS----PQRVRSLEGIP--LAQVAAGGAHSFALSLSGTS 200

Query: 86  WAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGK 145
           + WG NN  QL      +      P  +  L  ++V         ++ +  +G ++ +G 
Sbjct: 201 FGWGSNNTGQLALSGNNTPVQRYKPHSIGALKSLDVIYISCGYEHTAVLTQNGKVFTFGD 260

Query: 146 SKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALA 186
           +  GQLG      +   P +VE + G  + ++  G  H LA
Sbjct: 261 NSCGQLGYNPTAKKR-GPQQVEGIDG-LVSQIDCGSYHTLA 299



 Score = 45.8 bits (107), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 34/97 (35%), Positives = 45/97 (46%), Gaps = 15/97 (15%)

Query: 263 GVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGR----EKQDMGMFPVDINFHPVSIS 318
           G EV   ACG  HSL+L  +G + SCG N  GQLGR     ++  G+           +S
Sbjct: 20  GAEVRQAACGERHSLLLLSDGTVHSCGDNTQGQLGRRGKPREERPGLIKALETLLVGLVS 79

Query: 319 SGLGHSLAICEVRSSNVTGGARG-IVSWGWNRSSQLG 354
            G  HSLA+C           +G + +WG     QLG
Sbjct: 80  CGKEHSLAVCH----------KGRVFAWGAGSEGQLG 106


>gi|442318560|ref|YP_007358581.1| RCC1 repeat-containing protein [Myxococcus stipitatus DSM 14675]
 gi|441486202|gb|AGC42897.1| RCC1 repeat-containing protein [Myxococcus stipitatus DSM 14675]
          Length = 866

 Score =  105 bits (261), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 109/372 (29%), Positives = 174/372 (46%), Gaps = 56/372 (15%)

Query: 17  SRIFMRSASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHS 76
           SR     A GT V ++G  S G LG  T+       +  P +VP L S VT+++AG +H+
Sbjct: 255 SRTVALKADGT-VWTWGINSSGELGDGTTT-----HSLLPIQVPNL-SGVTNIAAGLWHT 307

Query: 77  LAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSS-AIG 135
           LAV  +G+ W+WG N   QLG G   +R     P  V GL  V    A + GVV + A+ 
Sbjct: 308 LAVKKDGSAWSWGNNAYGQLGDGTTLNRL---RPVLVAGLTGVR---ALSGGVVHTVALK 361

Query: 136 DDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFG 195
            DG+ W WG +  GQLG G   T + +P +V AL   + V++  G  H LA+ +DG L+ 
Sbjct: 362 WDGTAWGWGYNSAGQLGNGT-TTNSSIPVQVAAL--TQAVEIDAGGYHTLARRQDGTLYA 418

Query: 196 WGYSADGRIGNLGKALESSPLDSNID----------RSSESDQEISSSTI-------EKA 238
           WG +  G +G       S P+   +            S    ++++ + +          
Sbjct: 419 WGDNFYGALGTGNTTSSSVPVQVPLSGVRWFGAGYYYSVAERKKVNMAQVHTLFAWGHNT 478

Query: 239 QKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGR 298
              + +G   ++  P      +V G  +V  A G  HS+ LG  G + + G N YGQLG 
Sbjct: 479 NGELGDGTTTQRTSP---TAVVVSG--IVKTAGGSAHSVALGAGGAVWTWGYNAYGQLGN 533

Query: 299 EKQDMGMFPVDINFHP--VSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLG-- 354
                 + P  +      + +++G+ H++A+    S++ T     + +WG+N   QLG  
Sbjct: 534 GTTTQVVTPTQLPGMSGVIDVAAGVNHTVAL----SADGT-----VAAWGYNAYGQLGNG 584

Query: 355 ----RMGPDNVP 362
               ++ P +VP
Sbjct: 585 TTANQLTPQSVP 596



 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 92/314 (29%), Positives = 145/314 (46%), Gaps = 33/314 (10%)

Query: 56  PTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEG 115
           PTRV GL + V S SAG  HS+AVT +G+VW WG N   QLG G    RA    P +V G
Sbjct: 188 PTRVRGL-NQVVSASAGAEHSVAVTEDGSVWTWGSNAYGQLGDGTNTLRAV---PVQVPG 243

Query: 116 LDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIV 175
           +   +V A  A+G  + A+  DG++W WG +  G+LG G   T +++P +V  L+G  + 
Sbjct: 244 MS--DVVAVAAAGSRTVALKADGTVWTWGINSSGELGDGT-TTHSLLPIQVPNLSG--VT 298

Query: 176 KVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTI 235
            ++ G  H LA  +DG  + WG +A G++G+ G  L    L   +       + +S   +
Sbjct: 299 NIAAGLWHTLAVKKDGSAWSWGNNAYGQLGD-GTTLNR--LRPVLVAGLTGVRALSGGVV 355

Query: 236 E---------------KAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLG 280
                            +   +  G      +P+     +    + V+I  G  H+L   
Sbjct: 356 HTVALKWDGTAWGWGYNSAGQLGNGTTTNSSIPVQ----VAALTQAVEIDAGGYHTLARR 411

Query: 281 RNGVLLSCGSNVYGQLGREKQDMGMFPVDINFHPVSISSGLGHSLAICEVRSSNVTGGAR 340
           ++G L + G N YG LG         PV +    V    G G+  ++ E +  N+     
Sbjct: 412 QDGTLYAWGDNFYGALGTGNTTSSSVPVQVPLSGVRW-FGAGYYYSVAERKKVNMA-QVH 469

Query: 341 GIVSWGWNRSSQLG 354
            + +WG N + +LG
Sbjct: 470 TLFAWGHNTNGELG 483



 Score =  100 bits (250), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 92/305 (30%), Positives = 145/305 (47%), Gaps = 34/305 (11%)

Query: 23  SASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNN 82
           SA GT V ++G  + G LG      G   +   P  VP L   VT++SAG  H++A+  +
Sbjct: 565 SADGT-VAAWGYNAYGQLG-----NGTTANQLTPQSVPEL-DGVTAISAGSTHTVALKAD 617

Query: 83  GAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWV 142
           G VWAWG N   QLG G    R++   P +V  L+  NV +  A    + A+  DG+LWV
Sbjct: 618 GTVWAWGSNLYGQLGDGTFTHRSS---PVQVPSLE--NVVSIAAGHFHTVAVKGDGTLWV 672

Query: 143 WGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADG 202
           WG   +GQLGLG    ++ VP +V  L     V ++ G  H +A   +G+++ WGY++ G
Sbjct: 673 WGYGPQGQLGLGTTTNQS-VPVQVSGLG--HAVAIAAGGYHTVALLANGQVWTWGYNSSG 729

Query: 203 RIGNLGKALESSP-----LDSNIDRSS--------ESDQEISSSTIEKAQKLVSEGMEKE 249
           ++G+       SP     L + I  ++        + D  + +       +L  +G    
Sbjct: 730 QLGDATIIQRYSPVLVPGLTNVIALAAGGYTTAVLKRDGTVWAFGYNPNGQL-GDGTTTS 788

Query: 250 KYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVD 309
           +  P      L+    VVD++ G +H + L ++  + +CG N  GQLG         PV 
Sbjct: 789 RSSP---TATLMN--SVVDLSSGVNHMMGLRKDAWVRACGYNSAGQLGDGTTTQRPTPVQ 843

Query: 310 INFHP 314
           +   P
Sbjct: 844 VTNLP 848



 Score = 97.8 bits (242), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 94/305 (30%), Positives = 136/305 (44%), Gaps = 63/305 (20%)

Query: 68  SVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFAS 127
           SVS G YH+L V + G++WAWG N   QLG G    R   N P RV GL+Q  V +A A 
Sbjct: 149 SVSPGVYHTLEVKSGGSLWAWGNNPSGQLGNGQRTQR---NAPTRVRGLNQ--VVSASAG 203

Query: 128 GVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQ 187
              S A+ +DGS+W WG +  GQLG G +   A VP +V  ++   +V V+      +A 
Sbjct: 204 AEHSVAVTEDGSVWTWGSNAYGQLGDGTNTLRA-VPVQVPGMS--DVVAVAAAGSRTVAL 260

Query: 188 TEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGME 247
             DG ++ WG ++ G +G                                      +G  
Sbjct: 261 KADGTVWTWGINSSGELG--------------------------------------DGTT 282

Query: 248 KEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFP 307
               +PI   P L     V +IA G  H+L + ++G   S G+N YGQLG       + P
Sbjct: 283 THSLLPIQ-VPNL---SGVTNIAAGLWHTLAVKKDGSAWSWGNNAYGQLGDGTTLNRLRP 338

Query: 308 VDIN--FHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPDN--VPL 363
           V +       ++S G+ H++A+         G A G   WG+N + QLG     N  +P+
Sbjct: 339 VLVAGLTGVRALSGGVVHTVAL------KWDGTAWG---WGYNSAGQLGNGTTTNSSIPV 389

Query: 364 VVEGL 368
            V  L
Sbjct: 390 QVAAL 394



 Score = 89.4 bits (220), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 94/314 (29%), Positives = 149/314 (47%), Gaps = 27/314 (8%)

Query: 25  SGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGA 84
           +G AV ++G  + G LG      G       PT++PG+ S V  V+AG  H++A++ +G 
Sbjct: 516 AGGAVWTWGYNAYGQLG-----NGTTTQVVTPTQLPGM-SGVIDVAAGVNHTVALSADGT 569

Query: 85  VWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWG 144
           V AWG N   QLG G   ++ T   P+ V  LD V   +A ++  V  A+  DG++W WG
Sbjct: 570 VAAWGYNAYGQLGNGTTANQLT---PQSVPELDGVTAISAGSTHTV--ALKADGTVWAWG 624

Query: 145 KSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRI 204
            +  GQLG G   T    P +V +L  E +V ++ G  H +A   DG L+ WGY   G++
Sbjct: 625 SNLYGQLGDGT-FTHRSSPVQVPSL--ENVVSIAAGHFHTVAVKGDGTLWVWGYGPQGQL 681

Query: 205 G-----NLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLV----SEGMEKEKYMPII 255
           G     N    ++ S L   +  ++     +  + +   Q       S G   +  +   
Sbjct: 682 GLGTTTNQSVPVQVSGLGHAVAIAAGGYHTV--ALLANGQVWTWGYNSSGQLGDATIIQR 739

Query: 256 WEPFLVEGV-EVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFHP 314
           + P LV G+  V+ +A G   + VL R+G + + G N  GQLG         P     + 
Sbjct: 740 YSPVLVPGLTNVIALAAGGYTTAVLKRDGTVWAFGYNPNGQLGDGTTTSRSSPTATLMNS 799

Query: 315 -VSISSGLGHSLAI 327
            V +SSG+ H + +
Sbjct: 800 VVDLSSGVNHMMGL 813



 Score = 74.7 bits (182), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 90/315 (28%), Positives = 125/315 (39%), Gaps = 67/315 (21%)

Query: 55  EPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVE 114
            PT V  + S +   + G  HS+A+   GAVW WG N   QLG G      T      + 
Sbjct: 492 SPTAV--VVSGIVKTAGGSAHSVALGAGGAVWTWGYNAYGQLGNGTTTQVVTPTQLPGMS 549

Query: 115 GLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKI 174
           G+  ++V A     V  SA   DG++  WG +  GQLG G    + + P  V  L G  +
Sbjct: 550 GV--IDVAAGVNHTVALSA---DGTVAAWGYNAYGQLGNGTTANQ-LTPQSVPELDG--V 601

Query: 175 VKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSST 234
             +S G  H +A   DG ++ WG +  G++G+      SSP              +   +
Sbjct: 602 TAISAGSTHTVALKADGTVWAWGSNLYGQLGDGTFTHRSSP--------------VQVPS 647

Query: 235 IEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYG 294
           +E                             VV IA G  H++ +  +G L   G    G
Sbjct: 648 LEN----------------------------VVSIAAGHFHTVAVKGDGTLWVWGYGPQG 679

Query: 295 QLGREKQDMGMFPVDINFHPVSISSGLGHSLAICEVRSSNVTGGARGIV-SWGWNRSSQL 353
           QLG         PV +        SGLGH++AI       V   A G V +WG+N S QL
Sbjct: 680 QLGLGTTTNQSVPVQV--------SGLGHAVAIAAGGYHTVALLANGQVWTWGYNSSGQL 731

Query: 354 G------RMGPDNVP 362
           G      R  P  VP
Sbjct: 732 GDATIIQRYSPVLVP 746


>gi|327261081|ref|XP_003215360.1| PREDICTED: RCC1 and BTB domain-containing protein 2-like [Anolis
           carolinensis]
          Length = 526

 Score =  105 bits (261), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 58/188 (30%), Positives = 105/188 (55%), Gaps = 9/188 (4%)

Query: 66  VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAF 125
           VT V+ G +HS+ +T++G V+ WG NN  Q+G G+  ++A    P+RV    Q  +    
Sbjct: 130 VTEVACGSHHSMILTSDGEVYTWGYNNSGQVGSGSTANQAI---PRRVTSCLQNKIAVNI 186

Query: 126 ASG-VVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHA 184
           A G + S A+ ++G ++VWG +  GQLGLG    +   P R+ AL G ++ +V+ G+ H 
Sbjct: 187 ACGQMCSMAVVENGEVYVWGYNGNGQLGLGNSGNQP-TPCRIAALQGIRVQRVACGYAHT 245

Query: 185 LAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSE 244
           L  T++G+++ WG ++ G++G   ++ +S P+   +D+    D+ I  +    A    ++
Sbjct: 246 LVLTDEGQMYAWGANSYGQLGTGNRSNQSYPVPITVDK----DRVIEIAACHSAHTSAAK 301

Query: 245 GMEKEKYM 252
               + YM
Sbjct: 302 TQGSQVYM 309



 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 77/292 (26%), Positives = 136/292 (46%), Gaps = 31/292 (10%)

Query: 77  LAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNV-CAAFASG---VVSS 132
           L VT N  V+A G N    LG G  ++     +P+R++ L    + C ++ SG   VV++
Sbjct: 35  LYVTENNEVFALGTNCSGCLGVGDTQNSV---EPRRLDTLCGKKITCLSYGSGPHVVVAT 91

Query: 133 AIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEA-LAGEKIVKVSFGWGHALAQTEDG 191
           A   +G ++ WG +   QLG G     +++P ++   L  +K+ +V+ G  H++  T DG
Sbjct: 92  A---EGEVYTWGHNAYSQLGNGT-TNNSLLPCQISTNLVNKKVTEVACGSHHSMILTSDG 147

Query: 192 KLFGWGYSADGRIGNLGKALESSP------LDSNIDRSSESDQEISSSTIEKAQKLV--- 242
           +++ WGY+  G++G+   A ++ P      L + I  +    Q  S + +E  +  V   
Sbjct: 148 EVYTWGYNNSGQVGSGSTANQAIPRRVTSCLQNKIAVNIACGQMCSMAVVENGEVYVWGY 207

Query: 243 ----SEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGR 298
                 G+      P       ++G+ V  +ACG+ H+LVL   G + + G+N YGQLG 
Sbjct: 208 NGNGQLGLGNSGNQPTPCRIAALQGIRVQRVACGYAHTLVLTDEGQMYAWGANSYGQLGT 267

Query: 299 EKQDMGMFPVDINFHPVSISSGLGHSLAICE-VRSSNVTGGARGIVSWGWNR 349
             +    +PV     P+++       +A C    +S        +  WG  R
Sbjct: 268 GNRSNQSYPV-----PITVDKDRVIEIAACHSAHTSAAKTQGSQVYMWGQCR 314



 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 59/245 (24%), Positives = 105/245 (42%), Gaps = 57/245 (23%)

Query: 134 IGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWG-HALAQTEDGK 192
           + ++  ++  G +  G LG+G D   ++ P R++ L G+KI  +S+G G H +  T +G+
Sbjct: 37  VTENNEVFALGTNCSGCLGVG-DTQNSVEPRRLDTLCGKKITCLSYGSGPHVVVATAEGE 95

Query: 193 LFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYM 252
           ++ WG++A  ++GN                +S    +IS++ + K               
Sbjct: 96  VYTWGHNAYSQLGN------------GTTNNSLLPCQISTNLVNK--------------- 128

Query: 253 PIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDI-- 310
                       +V ++ACG  HS++L  +G + + G N  GQ+G         P  +  
Sbjct: 129 ------------KVTEVACGSHHSMILTSDGEVYTWGYNNSGQVGSGSTANQAIPRRVTS 176

Query: 311 ---NFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQ--LGRMGPDNVPLVV 365
              N   V+I+ G   S+A+ E     V         WG+N + Q  LG  G    P  +
Sbjct: 177 CLQNKIAVNIACGQMCSMAVVENGEVYV---------WGYNGNGQLGLGNSGNQPTPCRI 227

Query: 366 EGLEG 370
             L+G
Sbjct: 228 AALQG 232


>gi|332233498|ref|XP_003265939.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC6 isoform 2
           [Nomascus leucogenys]
          Length = 984

 Score =  104 bits (260), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 85/270 (31%), Positives = 130/270 (48%), Gaps = 45/270 (16%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPS-DVTSVSAGHYHSLAVTNNGAVWA 87
           V+S GD S+G LG         G+  EP  +  L + +V  VS G  HSLAV + G V+A
Sbjct: 44  VLSCGDNSRGQLG---RRGAPRGELPEP--IQALETLNVDLVSCGKEHSLAVCHKGRVFA 98

Query: 88  WGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSK 147
           WG  +E QLG G L+  +    PK++  L+ + +         S A+  D  ++ WGK+ 
Sbjct: 99  WGAGSEGQLGIGELKEISF--TPKKITTLNGIKIIQVSCGHYHSLALSKDSQVFSWGKNS 156

Query: 148 RGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNL 207
            GQLGLGK+      P RV +L G  + +V+ G  H+ A +  G  FGWG ++ G++   
Sbjct: 157 HGQLGLGKEFPSQASPQRVRSLEGIPLAQVAAGGAHSFALSLCGTSFGWGSNSAGQLALS 216

Query: 208 GKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVV 267
           G+ +   P+ SN                    K +S G               ++ + VV
Sbjct: 217 GRNV---PVQSN--------------------KPLSVGA--------------LKNLGVV 239

Query: 268 DIACGFDHSLVLGRNGVLLSCGSNVYGQLG 297
            I+CG +H+ VL ++G + + G N  GQLG
Sbjct: 240 YISCGAEHTAVLTQDGKVFTFGDNRSGQLG 269



 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 90/321 (28%), Positives = 141/321 (43%), Gaps = 58/321 (18%)

Query: 58  RVPGLP-SDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLG-RGALESRATWNDPKRVEG 115
           R  G P +++   ++G  HSL +  N  V + G N+  QLG RGA         P+ ++ 
Sbjct: 16  RTEGSPGAELLQAASGERHSLLLLTNHRVLSCGDNSRGQLGRRGAPRGEL----PEPIQA 71

Query: 116 LDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIV 175
           L+ +NV         S A+   G ++ WG    GQLG+G+    +  P ++  L G KI+
Sbjct: 72  LETLNVDLVSCGKEHSLAVCHKGRVFAWGAGSEGQLGIGELKEISFTPKKITTLNGIKII 131

Query: 176 KVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTI 235
           +VS G  H+LA ++D ++F WG ++ G++G LGK             S  S Q + S   
Sbjct: 132 QVSCGHYHSLALSKDSQVFSWGKNSHGQLG-LGKEFP----------SQASPQRVRS--- 177

Query: 236 EKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQ 295
                                    +EG+ +  +A G  HS  L   G     GSN  GQ
Sbjct: 178 -------------------------LEGIPLAQVAAGGAHSFALSLCGTSFGWGSNSAGQ 212

Query: 296 LGREKQDMGMFPVDINFHPVSISS--GLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQL 353
           L    +++   PV  N  P+S+ +   LG     C    + V      + ++G NRS QL
Sbjct: 213 LALSGRNV---PVQSN-KPLSVGALKNLGVVYISCGAEHTAVLTQDGKVFTFGDNRSGQL 268

Query: 354 G------RMGPDNVPLVVEGL 368
           G      + GP  V  +++GL
Sbjct: 269 GYSPTPEKRGPQLVE-IIDGL 288



 Score = 51.2 bits (121), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 55/204 (26%), Positives = 82/204 (40%), Gaps = 16/204 (7%)

Query: 24  ASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRV---PGLPSDVTSVSAGHYHSLAVT 80
           +  + V S+G  S G LGL             P RV    G+P  +  V+AG  HS A++
Sbjct: 144 SKDSQVFSWGKNSHGQLGLGKEFPSQAS----PQRVRSLEGIP--LAQVAAGGAHSFALS 197

Query: 81  NNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSL 140
             G  + WG N+  QL           N P  V  L  + V         ++ +  DG +
Sbjct: 198 LCGTSFGWGSNSAGQLALSGRNVPVQSNKPLSVGALKNLGVVYISCGAEHTAVLTQDGKV 257

Query: 141 WVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTE-DGKLFGWGYS 199
           + +G ++ GQLG      E   P  VE + G  + +V  G  H LA     G++  +G+ 
Sbjct: 258 FTFGDNRSGQLGYSP-TPEKRGPQLVEIIDG-LVSQVDCGSYHTLAYVHTTGQVVSFGHG 315

Query: 200 ADGRIGNLGKALESSPLDSNIDRS 223
                 + GK      L  N D S
Sbjct: 316 P----SDTGKPTHPEALTENFDIS 335


>gi|442319025|ref|YP_007359046.1| RCC1 repeat-containing protein [Myxococcus stipitatus DSM 14675]
 gi|441486667|gb|AGC43362.1| RCC1 repeat-containing protein [Myxococcus stipitatus DSM 14675]
          Length = 746

 Score =  104 bits (260), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 106/344 (30%), Positives = 157/344 (45%), Gaps = 44/344 (12%)

Query: 48  GVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGR-----GALE 102
           G GG  Y PT++PGL + V ++  G YH++A+  +G  WAWG ++  Q         A+ 
Sbjct: 334 GTGGVKYLPTQLPGL-TQVATLGVGRYHAMAIKQDGTAWAWGLHDAYQYANVTRPDSAVA 392

Query: 103 SRATWNDPKR-VEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAI 161
               +    R V GL +  V  A            DG++W  G++  GQLG G   T+ +
Sbjct: 393 VATQFTGALRPVGGLYETLVLKA------------DGTVWGAGRNGSGQLGDGSG-TQRV 439

Query: 162 VPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLD---- 217
           VP++   L G   V V+ G  HALA   DG ++ WG +  G++G+        P+     
Sbjct: 440 VPAQAVGLTGA--VSVASGANHALAAKSDGTVWAWGGNGSGQLGDGSTTASLIPIQVPGL 497

Query: 218 SNIDRSSESD---QEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLV---EGVEVVDIAC 271
           + +   +  D     + S     A    S G   +        P LV    GV+ V  A 
Sbjct: 498 TGVAAVAAGDGFSLALKSDGTLWAWGRNSSGSLGDGTTTGRTTPALVPNFTGVKAVATAP 557

Query: 272 GFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFHPV-SISSGLGHSLAICEV 330
           G DH L L  NG L + G N YGQLG       + PV +N   V SI++G  HSL +   
Sbjct: 558 GADHVLALKTNGTLWAWGGNSYGQLGDGSVLRKLSPVFVNLTGVLSIATGSDHSLVVR-- 615

Query: 331 RSSNVTGGARGIVSWGWNRSSQL--GRMGPDNVPLVVEGLEGES 372
                TGGA  + +WG N ++QL  G      +P+ V+G+ G +
Sbjct: 616 -----TGGA--VWTWGRNDAAQLGDGTGTTRTLPVQVQGVTGAT 652



 Score = 94.7 bits (234), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 97/328 (29%), Positives = 147/328 (44%), Gaps = 29/328 (8%)

Query: 55  EPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVE 114
            P R  GL S VTSVSAG+  S A+  +G VW WG N + +LG G L  R T   P +V 
Sbjct: 189 SPVRALGL-SLVTSVSAGYDFSAALKADGTVWTWGDNTDGELGNGTLTDRLT---PAQVP 244

Query: 115 GLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDI-TEAIVPSRVEALAGEK 173
           GL  V    A  S V+  A+  DG++WVWG++  G LGLG+      + P++V  ++  +
Sbjct: 245 GLTGVVFLMAGHSHVM--AVKSDGTVWVWGRNDWGVLGLGEGAPIRQLTPTQVPGIS--Q 300

Query: 174 IVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSP--LDSNIDRSSESDQEIS 231
           +  V  G  + +A   DG L+GWGY+  G++G     ++  P  L      ++       
Sbjct: 301 VAFVDSGEHYTVALKTDGTLWGWGYNNYGQLGEGTGGVKYLPTQLPGLTQVATLGVGRYH 360

Query: 232 SSTIEKAQKLVSEGMEKEKYMPIIWEP-----FLVEGVEVVDIACGFDHSLVLGRNGVLL 286
           +  I++     + G+        +  P        +    +    G   +LVL  +G + 
Sbjct: 361 AMAIKQDGTAWAWGLHDAYQYANVTRPDSAVAVATQFTGALRPVGGLYETLVLKADGTVW 420

Query: 287 SCGSNVYGQLGREKQDMGMFPVDIN--FHPVSISSGLGHSLAICEVRSSNVTGGARGIVS 344
             G N  GQLG       + P         VS++SG  H+LA    +S         + +
Sbjct: 421 GAGRNGSGQLGDGSGTQRVVPAQAVGLTGAVSVASGANHALA---AKSDGT------VWA 471

Query: 345 WGWNRSSQL--GRMGPDNVPLVVEGLEG 370
           WG N S QL  G      +P+ V GL G
Sbjct: 472 WGGNGSGQLGDGSTTASLIPIQVPGLTG 499



 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 84/279 (30%), Positives = 131/279 (46%), Gaps = 53/279 (18%)

Query: 54  YEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRV 113
           + P  VPG  S V+SVS G+ HS+A+ ++G VWAWGRN + QLG G+   R +   P R 
Sbjct: 138 WSPIPVPGF-SGVSSVSGGYMHSMALKSDGTVWAWGRNADGQLGDGSTTQRLS---PVRA 193

Query: 114 EGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEK 173
            GL  V   +A      S+A+  DG++W WG +  G+LG G  +T+ + P++V  L G  
Sbjct: 194 LGLSLVTSVSAGYD--FSAALKADGTVWTWGDNTDGELGNGT-LTDRLTPAQVPGLTG-- 248

Query: 174 IVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSS 233
           +V +  G  H +A   DG ++ WG +  G +G LG   E +P+                 
Sbjct: 249 VVFLMAGHSHVMAVKSDGTVWVWGRNDWGVLG-LG---EGAPI----------------- 287

Query: 234 TIEKAQKLVSEGMEKEKYMPIIWEPFLVEGV-EVVDIACGFDHSLVLGRNGVLLSCGSNV 292
                ++L                P  V G+ +V  +  G  +++ L  +G L   G N 
Sbjct: 288 -----RQLT---------------PTQVPGISQVAFVDSGEHYTVALKTDGTLWGWGYNN 327

Query: 293 YGQLGREKQDMGMFPVDINFHPVSISSGLG--HSLAICE 329
           YGQLG     +   P  +       + G+G  H++AI +
Sbjct: 328 YGQLGEGTGGVKYLPTQLPGLTQVATLGVGRYHAMAIKQ 366



 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 91/289 (31%), Positives = 136/289 (47%), Gaps = 30/289 (10%)

Query: 56  PTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEG 115
           P +  GL   V SV++G  H+LA  ++G VWAWG N   QLG G+  +      P +V G
Sbjct: 441 PAQAVGLTGAV-SVASGANHALAAKSDGTVWAWGGNGSGQLGDGSTTASLI---PIQVPG 496

Query: 116 LDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIV 175
           L    V A  A    S A+  DG+LW WG++  G LG     T    P+ V    G K V
Sbjct: 497 L--TGVAAVAAGDGFSLALKSDGTLWAWGRNSSGSLGD-GTTTGRTTPALVPNFTGVKAV 553

Query: 176 KVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSN----IDRSSESDQEIS 231
             + G  H LA   +G L+ WG ++ G++G+     + SP+  N    +  ++ SD  + 
Sbjct: 554 ATAPGADHVLALKTNGTLWAWGGNSYGQLGDGSVLRKLSPVFVNLTGVLSIATGSDHSLV 613

Query: 232 SST---------IEKAQKLVSEGMEKEKYMPIIWEPFLVEGVE-VVDIACGFDHSLVLGR 281
             T          + AQ  + +G    + +P+      V+GV     +A G  HSL+L  
Sbjct: 614 VRTGGAVWTWGRNDAAQ--LGDGTGTTRTLPV-----QVQGVTGATALAAGDRHSLMLRS 666

Query: 282 NGVLLSCGSNVYGQLGREKQDMGMFPVDINFHP--VSISSGLGHSLAIC 328
           +G L + GSN  G+LG         PV +      V++S+G  HSLA+ 
Sbjct: 667 DGTLWAWGSNSEGELGDGTMTGRPLPVRVRAPAGVVALSAGARHSLAMT 715



 Score = 89.4 bits (220), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 88/319 (27%), Positives = 145/319 (45%), Gaps = 34/319 (10%)

Query: 24  ASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNG 83
           A GT V ++GD + G LG      G   D   P +VPGL + V  + AGH H +AV ++G
Sbjct: 214 ADGT-VWTWGDNTDGELG-----NGTLTDRLTPAQVPGL-TGVVFLMAGHSHVMAVKSDG 266

Query: 84  AVWAWGRNNE--VQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLW 141
            VW WGRN+   + LG GA   + T   P +V G+ QV    +     V  A+  DG+LW
Sbjct: 267 TVWVWGRNDWGVLGLGEGAPIRQLT---PTQVPGISQVAFVDSGEHYTV--ALKTDGTLW 321

Query: 142 VWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSAD 201
            WG +  GQLG G    +  +P+++  L   ++  +  G  HA+A  +DG  + WG    
Sbjct: 322 GWGYNNYGQLGEGTGGVK-YLPTQLPGL--TQVATLGVGRYHAMAIKQDGTAWAWGLHDA 378

Query: 202 GRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLV-----------SEGMEKEK 250
            +  N+ +   +  + +    +      +  + + KA   V            +G   ++
Sbjct: 379 YQYANVTRPDSAVAVATQFTGALRPVGGLYETLVLKADGTVWGAGRNGSGQLGDGSGTQR 438

Query: 251 YMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDI 310
            +P       V     V +A G +H+L    +G + + G N  GQLG       + P+ +
Sbjct: 439 VVPAQ----AVGLTGAVSVASGANHALAAKSDGTVWAWGGNGSGQLGDGSTTASLIPIQV 494

Query: 311 N--FHPVSISSGLGHSLAI 327
                  ++++G G SLA+
Sbjct: 495 PGLTGVAAVAAGDGFSLAL 513



 Score = 85.5 bits (210), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 60/152 (39%), Positives = 84/152 (55%), Gaps = 10/152 (6%)

Query: 66  VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAF 125
           V S++ G  HSL V   GAVW WGRN+  QLG G   +R     P +V+G   V    A 
Sbjct: 601 VLSIATGSDHSLVVRTGGAVWTWGRNDAAQLGDGTGTTRTL---PVQVQG---VTGATAL 654

Query: 126 ASGVVSS-AIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHA 184
           A+G   S  +  DG+LW WG +  G+LG G  +T   +P RV A AG  +V +S G  H+
Sbjct: 655 AAGDRHSLMLRSDGTLWAWGSNSEGELGDGT-MTGRPLPVRVRAPAG--VVALSAGARHS 711

Query: 185 LAQTEDGKLFGWGYSADGRIGNLGKALESSPL 216
           LA T DG ++ WG +  G+ GN     +++P+
Sbjct: 712 LAMTPDGTVWAWGLNLFGQHGNNKWGFKTTPV 743



 Score = 77.8 bits (190), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 75/245 (30%), Positives = 114/245 (46%), Gaps = 22/245 (8%)

Query: 63  PSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVC 122
           P D  S+ +   H+L +  +G VW+WG N   +LG G    R+T   P +V  L  V   
Sbjct: 48  PQDTLSLQS---HTLWLKPDGTVWSWGTNYGGELGDGTHNHRST---PAQVPNLTSVTAV 101

Query: 123 AAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWG 182
            A   G  S A   DGSLWVWG +  GQLG G   T    P  V   +G  +  VS G+ 
Sbjct: 102 EA-GRGNYSMARRADGSLWVWGYNTYGQLGDGT-TTSRWSPIPVPGFSG--VSSVSGGYM 157

Query: 183 HALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDS---NIDRSSESDQEISSSTIEKAQ 239
           H++A   DG ++ WG +ADG++G+       SP+ +   ++  S  +  + S++   KA 
Sbjct: 158 HSMALKSDGTVWAWGRNADGQLGDGSTTQRLSPVRALGLSLVTSVSAGYDFSAAL--KAD 215

Query: 240 KLV------SEGMEKEKYMPIIWEPFLVEGVE-VVDIACGFDHSLVLGRNGVLLSCGSNV 292
             V      ++G      +     P  V G+  VV +  G  H + +  +G +   G N 
Sbjct: 216 GTVWTWGDNTDGELGNGTLTDRLTPAQVPGLTGVVFLMAGHSHVMAVKSDGTVWVWGRND 275

Query: 293 YGQLG 297
           +G LG
Sbjct: 276 WGVLG 280


>gi|297274438|ref|XP_001101212.2| PREDICTED: RCC1 and BTB domain-containing protein 2 isoform 3
           [Macaca mulatta]
          Length = 519

 Score =  104 bits (260), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 61/177 (34%), Positives = 97/177 (54%), Gaps = 5/177 (2%)

Query: 65  DVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAA 124
            V  V+ G YHSL +T++G V+AWG NN  Q+G G+  ++     P+RV G  Q  V   
Sbjct: 153 QVIEVACGSYHSLVLTSDGEVFAWGYNNSGQVGSGSTVNQPI---PRRVTGCLQNKVVVT 209

Query: 125 FASG-VVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGH 183
            A G +   A+ D G ++VWG +  GQLGLG    +   P RV AL G ++ +V+ G+ H
Sbjct: 210 IACGQMCCMAVVDTGEVYVWGYNGNGQLGLGSSGNQP-TPCRVAALQGIRVQRVACGYAH 268

Query: 184 ALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQK 240
            L  T++G+++ WG ++ G++G   K+ +S P    +++    +     ST   A K
Sbjct: 269 TLVLTDEGQVYAWGANSYGQLGTGNKSNQSYPTPVTVEKDRIIEIAACHSTHTSAAK 325



 Score = 81.3 bits (199), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 69/289 (23%), Positives = 128/289 (44%), Gaps = 25/289 (8%)

Query: 77  LAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCA-AFASGVVSSAIG 135
           L  T N  ++  G N    LG G ++S     +P+R++ L    + + ++ SG       
Sbjct: 59  LYTTVNDEIFVLGTNCCGCLGLGDVQSTI---EPRRLDSLSGKKIASLSYGSGPHIVLAT 115

Query: 136 DDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEA-LAGEKIVKVSFGWGHALAQTEDGKLF 194
            +G ++ WG +   QLG G      +VP ++   L+ +++++V+ G  H+L  T DG++F
Sbjct: 116 TEGEVFTWGHNAYSQLGNGT-TNHGLVPCQISTNLSNKQVIEVACGSYHSLVLTSDGEVF 174

Query: 195 GWGYSADGRIGNLGKALESSP------LDSNIDRSSESDQEISSSTIEKAQKLV------ 242
            WGY+  G++G+     +  P      L + +  +    Q    + ++  +  V      
Sbjct: 175 AWGYNNSGQVGSGSTVNQPIPRRVTGCLQNKVVVTIACGQMCCMAVVDTGEVYVWGYNGN 234

Query: 243 -SEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQ 301
              G+      P       ++G+ V  +ACG+ H+LVL   G + + G+N YGQLG   +
Sbjct: 235 GQLGLGSSGNQPTPCRVAALQGIRVQRVACGYAHTLVLTDEGQVYAWGANSYGQLGTGNK 294

Query: 302 DMGMFPVDINFHPVSISSGLGHSLAICEVRSSNVTGGARG-IVSWGWNR 349
               +P      PV++       +A C    ++      G +  WG  R
Sbjct: 295 SNQSYPT-----PVTVEKDRIIEIAACHSTHTSAAKTQGGHVYMWGQCR 338



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 69/270 (25%), Positives = 114/270 (42%), Gaps = 66/270 (24%)

Query: 114 EGLDQVNVCAAFASG---VVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALA 170
           E L  +     F S    V+ + + D+  ++V G +  G LGLG D+   I P R+++L+
Sbjct: 40  EELQLIRQACVFGSAGNEVLYTTVNDE--IFVLGTNCCGCLGLG-DVQSTIEPRRLDSLS 96

Query: 171 GEKIVKVSFGWG-HALAQTEDGKLFGWGYSADGRIGN--LGKALESSPLDSNIDRSSESD 227
           G+KI  +S+G G H +  T +G++F WG++A  ++GN      L    + +N+       
Sbjct: 97  GKKIASLSYGSGPHIVLATTEGEVFTWGHNAYSQLGNGTTNHGLVPCQISTNLSNK---- 152

Query: 228 QEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLS 287
                                                +V+++ACG  HSLVL  +G + +
Sbjct: 153 -------------------------------------QVIEVACGSYHSLVLTSDGEVFA 175

Query: 288 CGSNVYGQLGREKQDMGMFPVDI-----NFHPVSISSGLGHSLAICEVRSSNVTGGARGI 342
            G N  GQ+G         P  +     N   V+I+ G    +A+ +      TG    +
Sbjct: 176 WGYNNSGQVGSGSTVNQPIPRRVTGCLQNKVVVTIACGQMCCMAVVD------TGE---V 226

Query: 343 VSWGWNRSSQ--LGRMGPDNVPLVVEGLEG 370
             WG+N + Q  LG  G    P  V  L+G
Sbjct: 227 YVWGYNGNGQLGLGSSGNQPTPCRVAALQG 256


>gi|114565730|ref|YP_752884.1| alpha-tubulin suppressor-like protein [Syntrophomonas wolfei subsp.
           wolfei str. Goettingen]
 gi|114336665|gb|ABI67513.1| Alpha-tubulin suppressor and related RCC1 domain-containing
           proteins-like protein [Syntrophomonas wolfei subsp.
           wolfei str. Goettingen]
          Length = 726

 Score =  104 bits (260), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 103/348 (29%), Positives = 151/348 (43%), Gaps = 68/348 (19%)

Query: 32  FGDGSQGALG-LPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGR 90
           +G+  +G LG LP       G    P ++P L  ++ +V+ G + SLA+ N+G VWAWG 
Sbjct: 133 WGNNEKGQLGNLPL------GPHSTPQQIPNL-QNMKAVACGEFFSLALNNDGTVWAWGN 185

Query: 91  NNEVQLGRGALESRATWNDPKRVEG------LDQVNVCAAFASGVVSSAIGDDGSLWVWG 144
           N+  +LGRGA  +   +N+P++V+G      LD  NV A         A+  DG++W WG
Sbjct: 186 NDGNELGRGA--TGPFYNNPEKVKGPGGTGYLD--NVTAIACGRFHGLALKSDGTVWAWG 241

Query: 145 KSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRI 204
               G LG G+D +E + P RV  L G K   +  G   +LA   DG ++ WG       
Sbjct: 242 DGSWGTLGNGEDFSEEVYPVRVLNLTGVK--SIDAGDYFSLALKNDGTVWAWGGR----- 294

Query: 205 GNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGV 264
                 +     D  +D      Q++           V                      
Sbjct: 295 -----GIGGQLGDGEVDDFVNIPQQVKGLNGLGNLNNVEA-------------------- 329

Query: 265 EVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFHPVS----ISSG 320
               I CG +HSL L  NG +L+ G N YG+LG         PV +    +S    I++G
Sbjct: 330 ----ITCGINHSLALKDNGTILAWGEN-YGRLGDGDATSSESPVPVLTQDISGVVAIAAG 384

Query: 321 LGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPDNVPLVVEGL 368
             HSLA    R ++ T     + +WG N   QL       VP+ VEG+
Sbjct: 385 GEHSLA----RKNDGT-----VWAWGSNHHYQLTGDNDSGVPVQVEGI 423



 Score = 58.2 bits (139), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 58/174 (33%), Positives = 91/174 (52%), Gaps = 14/174 (8%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAW 88
           V ++GDGS G LG     +    +   P RV  L + V S+ AG Y SLA+ N+G VWAW
Sbjct: 237 VWAWGDGSWGTLGNGEDFS----EEVYPVRVLNL-TGVKSIDAGDYFSLALKNDGTVWAW 291

Query: 89  GRNNEVQLGRGALESRATWNDPKRVEGLDQVNV---CAAFASGVVSS-AIGDDGSLWVWG 144
           G            E     N P++V+GL+ +       A   G+  S A+ D+G++  WG
Sbjct: 292 GGRGIGGQLGDG-EVDDFVNIPQQVKGLNGLGNLNNVEAITCGINHSLALKDNGTILAWG 350

Query: 145 KSKRGQLGLGKDIT-EAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWG 197
           ++  G+LG G   + E+ VP   + ++G  +V ++ G  H+LA+  DG ++ WG
Sbjct: 351 EN-YGRLGDGDATSSESPVPVLTQDISG--VVAIAAGGEHSLARKNDGTVWAWG 401



 Score = 51.6 bits (122), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 69/240 (28%), Positives = 103/240 (42%), Gaps = 26/240 (10%)

Query: 113 VEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEA--LA 170
           V+G D +    A A    S A+ +D  LW WG    GQ+G GK I +    +  E   L 
Sbjct: 44  VKGTDLIEPQVA-AGEATSFALREDQKLWGWGIDNYGQVGNGKIIVDGDERNGQETPYLL 102

Query: 171 GEK-----IVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSP--LDSNIDRS 223
            EK       +V+ G  H LA   DG ++GWG +  G++GNL     S+P  + +  +  
Sbjct: 103 TEKGFNEGFKQVAAGRWHTLAVKNDGTVWGWGNNEKGQLGNLPLGPHSTPQQIPNLQNMK 162

Query: 224 SESDQEISSSTIEKAQKLVSEGMEKEKYM------PIIWEPFLVEGV-------EVVDIA 270
           + +  E  S  +     + + G      +      P    P  V+G         V  IA
Sbjct: 163 AVACGEFFSLALNNDGTVWAWGNNDGNELGRGATGPFYNNPEKVKGPGGTGYLDNVTAIA 222

Query: 271 CGFDHSLVLGRNGVLLSCGSNVYGQLGR-EKQDMGMFPVDI-NFHPV-SISSGLGHSLAI 327
           CG  H L L  +G + + G   +G LG  E     ++PV + N   V SI +G   SLA+
Sbjct: 223 CGRFHGLALKSDGTVWAWGDGSWGTLGNGEDFSEEVYPVRVLNLTGVKSIDAGDYFSLAL 282


>gi|332233496|ref|XP_003265938.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC6 isoform 1
           [Nomascus leucogenys]
          Length = 1020

 Score =  104 bits (260), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 85/270 (31%), Positives = 130/270 (48%), Gaps = 45/270 (16%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPS-DVTSVSAGHYHSLAVTNNGAVWA 87
           V+S GD S+G LG         G+  EP  +  L + +V  VS G  HSLAV + G V+A
Sbjct: 44  VLSCGDNSRGQLG---RRGAPRGELPEP--IQALETLNVDLVSCGKEHSLAVCHKGRVFA 98

Query: 88  WGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSK 147
           WG  +E QLG G L+  +    PK++  L+ + +         S A+  D  ++ WGK+ 
Sbjct: 99  WGAGSEGQLGIGELKEISF--TPKKITTLNGIKIIQVSCGHYHSLALSKDSQVFSWGKNS 156

Query: 148 RGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNL 207
            GQLGLGK+      P RV +L G  + +V+ G  H+ A +  G  FGWG ++ G++   
Sbjct: 157 HGQLGLGKEFPSQASPQRVRSLEGIPLAQVAAGGAHSFALSLCGTSFGWGSNSAGQLALS 216

Query: 208 GKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVV 267
           G+ +   P+ SN                    K +S G               ++ + VV
Sbjct: 217 GRNV---PVQSN--------------------KPLSVGA--------------LKNLGVV 239

Query: 268 DIACGFDHSLVLGRNGVLLSCGSNVYGQLG 297
            I+CG +H+ VL ++G + + G N  GQLG
Sbjct: 240 YISCGAEHTAVLTQDGKVFTFGDNRSGQLG 269



 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 90/321 (28%), Positives = 141/321 (43%), Gaps = 58/321 (18%)

Query: 58  RVPGLP-SDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLG-RGALESRATWNDPKRVEG 115
           R  G P +++   ++G  HSL +  N  V + G N+  QLG RGA         P+ ++ 
Sbjct: 16  RTEGSPGAELLQAASGERHSLLLLTNHRVLSCGDNSRGQLGRRGAPRGEL----PEPIQA 71

Query: 116 LDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIV 175
           L+ +NV         S A+   G ++ WG    GQLG+G+    +  P ++  L G KI+
Sbjct: 72  LETLNVDLVSCGKEHSLAVCHKGRVFAWGAGSEGQLGIGELKEISFTPKKITTLNGIKII 131

Query: 176 KVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTI 235
           +VS G  H+LA ++D ++F WG ++ G++G LGK             S  S Q + S   
Sbjct: 132 QVSCGHYHSLALSKDSQVFSWGKNSHGQLG-LGKEFP----------SQASPQRVRS--- 177

Query: 236 EKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQ 295
                                    +EG+ +  +A G  HS  L   G     GSN  GQ
Sbjct: 178 -------------------------LEGIPLAQVAAGGAHSFALSLCGTSFGWGSNSAGQ 212

Query: 296 LGREKQDMGMFPVDINFHPVSISS--GLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQL 353
           L    +++   PV  N  P+S+ +   LG     C    + V      + ++G NRS QL
Sbjct: 213 LALSGRNV---PVQSN-KPLSVGALKNLGVVYISCGAEHTAVLTQDGKVFTFGDNRSGQL 268

Query: 354 G------RMGPDNVPLVVEGL 368
           G      + GP  V  +++GL
Sbjct: 269 GYSPTPEKRGPQLVE-IIDGL 288



 Score = 51.2 bits (121), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 55/204 (26%), Positives = 82/204 (40%), Gaps = 16/204 (7%)

Query: 24  ASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRV---PGLPSDVTSVSAGHYHSLAVT 80
           +  + V S+G  S G LGL             P RV    G+P  +  V+AG  HS A++
Sbjct: 144 SKDSQVFSWGKNSHGQLGLGKEFPSQAS----PQRVRSLEGIP--LAQVAAGGAHSFALS 197

Query: 81  NNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSL 140
             G  + WG N+  QL           N P  V  L  + V         ++ +  DG +
Sbjct: 198 LCGTSFGWGSNSAGQLALSGRNVPVQSNKPLSVGALKNLGVVYISCGAEHTAVLTQDGKV 257

Query: 141 WVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTE-DGKLFGWGYS 199
           + +G ++ GQLG      E   P  VE + G  + +V  G  H LA     G++  +G+ 
Sbjct: 258 FTFGDNRSGQLGYSP-TPEKRGPQLVEIIDG-LVSQVDCGSYHTLAYVHTTGQVVSFGHG 315

Query: 200 ADGRIGNLGKALESSPLDSNIDRS 223
                 + GK      L  N D S
Sbjct: 316 P----SDTGKPTHPEALTENFDIS 335


>gi|387541132|gb|AFJ71193.1| RCC1 and BTB domain-containing protein 2 [Macaca mulatta]
          Length = 551

 Score =  104 bits (260), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 61/176 (34%), Positives = 97/176 (55%), Gaps = 5/176 (2%)

Query: 66  VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAF 125
           V  V+ G YHSL +T++G V+AWG NN  Q+G G+  ++     P+RV G  Q  V    
Sbjct: 154 VIEVACGSYHSLVLTSDGEVFAWGYNNSGQVGSGSTVNQPI---PRRVTGCLQNKVVVTI 210

Query: 126 ASG-VVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHA 184
           A G +   A+ D G ++VWG +  GQLGLG    +   P RV AL G ++ +V+ G+ H 
Sbjct: 211 ACGQMCCMAVVDTGEVYVWGYNGNGQLGLGSSGNQP-TPCRVAALQGIRVQRVACGYAHT 269

Query: 185 LAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQK 240
           L  T++G+++ WG ++ G++G   K+ +S P    +++    +     ST   A K
Sbjct: 270 LVLTDEGQVYAWGANSYGQLGTGNKSNQSYPTPVTMEKDRIIEIAACHSTHTSAAK 325



 Score = 80.9 bits (198), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 69/289 (23%), Positives = 128/289 (44%), Gaps = 25/289 (8%)

Query: 77  LAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCA-AFASGVVSSAIG 135
           L  T N  ++  G N    LG G ++S     +P+R++ L    + + ++ SG       
Sbjct: 59  LYTTVNDEIFVLGTNCCGCLGLGDVQSTI---EPRRLDSLSGKKIASLSYGSGPHIVLAT 115

Query: 136 DDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEA-LAGEKIVKVSFGWGHALAQTEDGKLF 194
            +G ++ WG +   QLG G      +VP ++   L+ +++++V+ G  H+L  T DG++F
Sbjct: 116 TEGEVFTWGHNAYSQLGNGT-TNHGLVPCQISTNLSNKQVIEVACGSYHSLVLTSDGEVF 174

Query: 195 GWGYSADGRIGNLGKALESSP------LDSNIDRSSESDQEISSSTIEKAQKLV------ 242
            WGY+  G++G+     +  P      L + +  +    Q    + ++  +  V      
Sbjct: 175 AWGYNNSGQVGSGSTVNQPIPRRVTGCLQNKVVVTIACGQMCCMAVVDTGEVYVWGYNGN 234

Query: 243 -SEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQ 301
              G+      P       ++G+ V  +ACG+ H+LVL   G + + G+N YGQLG   +
Sbjct: 235 GQLGLGSSGNQPTPCRVAALQGIRVQRVACGYAHTLVLTDEGQVYAWGANSYGQLGTGNK 294

Query: 302 DMGMFPVDINFHPVSISSGLGHSLAICEVRSSNVTGGARG-IVSWGWNR 349
               +P      PV++       +A C    ++      G +  WG  R
Sbjct: 295 SNQSYPT-----PVTMEKDRIIEIAACHSTHTSAAKTQGGHVYMWGQCR 338



 Score = 62.8 bits (151), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 67/270 (24%), Positives = 117/270 (43%), Gaps = 63/270 (23%)

Query: 111 KRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALA 170
           + ++ + Q  V  +  + V+ + + D+  ++V G +  G LGLG D+   I P R+++L+
Sbjct: 40  EELQLIRQACVFGSAGNEVLYTTVNDE--IFVLGTNCCGCLGLG-DVQSTIEPRRLDSLS 96

Query: 171 GEKIVKVSFGWG-HALAQTEDGKLFGWGYSADGRIGN--LGKALESSPLDSNIDRSSESD 227
           G+KI  +S+G G H +  T +G++F WG++A  ++GN      L    + +N+       
Sbjct: 97  GKKIASLSYGSGPHIVLATTEGEVFTWGHNAYSQLGNGTTNHGLVPCQISTNLSNK---- 152

Query: 228 QEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLS 287
                                                +V+++ACG  HSLVL  +G + +
Sbjct: 153 -------------------------------------QVIEVACGSYHSLVLTSDGEVFA 175

Query: 288 CGSNVYGQLGREKQDMGMFPVDI-----NFHPVSISSGLGHSLAICEVRSSNVTGGARGI 342
            G N  GQ+G         P  +     N   V+I+ G    +A+ +      TG    +
Sbjct: 176 WGYNNSGQVGSGSTVNQPIPRRVTGCLQNKVVVTIACGQMCCMAVVD------TGE---V 226

Query: 343 VSWGWNRSSQ--LGRMGPDNVPLVVEGLEG 370
             WG+N + Q  LG  G    P  V  L+G
Sbjct: 227 YVWGYNGNGQLGLGSSGNQPTPCRVAALQG 256


>gi|345788791|ref|XP_542564.3| PREDICTED: RCC1 and BTB domain-containing protein 2 isoform 1
           [Canis lupus familiaris]
          Length = 529

 Score =  104 bits (260), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 65/189 (34%), Positives = 101/189 (53%), Gaps = 9/189 (4%)

Query: 65  DVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAA 124
            VT V+ G YHSL +T++G V+AWG NN  Q+G G   S A    P+RV G  Q  V   
Sbjct: 153 QVTEVACGSYHSLVLTSDGEVFAWGYNNSGQVGSG---STANQPIPRRVTGCLQNKVVVN 209

Query: 125 FASG-VVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGH 183
            A G + S A+ + G ++VWG +  GQLGLG    +   P R+ AL G +I +V+ G+ H
Sbjct: 210 IACGQMCSMAVVNTGEVYVWGYNGNGQLGLGSSGNQP-TPCRIAALQGIRIQRVACGYAH 268

Query: 184 ALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVS 243
            L  T++G+++ WG ++ G++G   K+ +S P    +    E D+ +  +    A    +
Sbjct: 269 TLVLTDEGQVYAWGANSYGQLGTGNKSNQSYPAPVVV----EKDRIVEIAACHSAHTSAA 324

Query: 244 EGMEKEKYM 252
           +      YM
Sbjct: 325 KTQGGHVYM 333



 Score = 85.1 bits (209), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 63/249 (25%), Positives = 114/249 (45%), Gaps = 19/249 (7%)

Query: 77  LAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNV-CAAFASGVVSSAIG 135
           L  T N  ++  G N    LG G ++S     +P+R++ L    + C ++ SG       
Sbjct: 59  LYTTVNDEIFVLGTNCCGCLGLGDVQSTI---EPRRLDALSGKKIACLSYGSGPHIVLAT 115

Query: 136 DDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEA-LAGEKIVKVSFGWGHALAQTEDGKLF 194
            +G ++ WG +   QLG G      +VP  +   L+ +++ +V+ G  H+L  T DG++F
Sbjct: 116 TEGEVFTWGHNAYSQLGNGT-TNHGLVPCHISTNLSNKQVTEVACGSYHSLVLTSDGEVF 174

Query: 195 GWGYSADGRIGNLGKALESSP------LDSNIDRSSESDQEISSSTIEKAQKLV------ 242
            WGY+  G++G+   A +  P      L + +  +    Q  S + +   +  V      
Sbjct: 175 AWGYNNSGQVGSGSTANQPIPRRVTGCLQNKVVVNIACGQMCSMAVVNTGEVYVWGYNGN 234

Query: 243 -SEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQ 301
              G+      P       ++G+ +  +ACG+ H+LVL   G + + G+N YGQLG   +
Sbjct: 235 GQLGLGSSGNQPTPCRIAALQGIRIQRVACGYAHTLVLTDEGQVYAWGANSYGQLGTGNK 294

Query: 302 DMGMFPVDI 310
               +P  +
Sbjct: 295 SNQSYPAPV 303



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 68/270 (25%), Positives = 116/270 (42%), Gaps = 63/270 (23%)

Query: 111 KRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALA 170
           + ++ + Q  V  +  + V+ + + D+  ++V G +  G LGLG D+   I P R++AL+
Sbjct: 40  EELQLIRQACVFGSAGNEVLYTTVNDE--IFVLGTNCCGCLGLG-DVQSTIEPRRLDALS 96

Query: 171 GEKIVKVSFGWG-HALAQTEDGKLFGWGYSADGRIGN--LGKALESSPLDSNIDRSSESD 227
           G+KI  +S+G G H +  T +G++F WG++A  ++GN      L    + +N+       
Sbjct: 97  GKKIACLSYGSGPHIVLATTEGEVFTWGHNAYSQLGNGTTNHGLVPCHISTNLSNK---- 152

Query: 228 QEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLS 287
                                                +V ++ACG  HSLVL  +G + +
Sbjct: 153 -------------------------------------QVTEVACGSYHSLVLTSDGEVFA 175

Query: 288 CGSNVYGQLGREKQDMGMFPVDI-----NFHPVSISSGLGHSLAICEVRSSNVTGGARGI 342
            G N  GQ+G         P  +     N   V+I+ G   S+A+       V  G   +
Sbjct: 176 WGYNNSGQVGSGSTANQPIPRRVTGCLQNKVVVNIACGQMCSMAV-------VNTGE--V 226

Query: 343 VSWGWNRSSQ--LGRMGPDNVPLVVEGLEG 370
             WG+N + Q  LG  G    P  +  L+G
Sbjct: 227 YVWGYNGNGQLGLGSSGNQPTPCRIAALQG 256


>gi|449447492|ref|XP_004141502.1| PREDICTED: LOW QUALITY PROTEIN: probable E3 ubiquitin-protein
           ligase HERC1-like [Cucumis sativus]
          Length = 390

 Score =  104 bits (260), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 62/167 (37%), Positives = 97/167 (58%), Gaps = 5/167 (2%)

Query: 56  PTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEG 115
           P RV GL   V  ++ G +H+LA+  +G +WAWG N   QLG G  + R+    P  V+G
Sbjct: 190 PVRVQGL-DMVRLIAVGAFHNLALQEDGTLWAWGNNEYGQLGTGDTQPRS---QPIPVQG 245

Query: 116 LDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLG-KDITEAIVPSRVEALAGEKI 174
           L  + +    A G  S+A+ D+G ++ WG+ + G+LG G  D +  +VP +V+ L+GE+I
Sbjct: 246 LSGLTLVDIAAGGWHSTALTDNGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVQLLSGEEI 305

Query: 175 VKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNID 221
           V++S G  H++A T DG++F +G    GR+G   K     P +  ID
Sbjct: 306 VQISCGGTHSVAVTSDGRMFSFGRGDHGRLGYGRKVTTGQPEEVPID 352



 Score = 91.7 bits (226), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 82/283 (28%), Positives = 133/283 (46%), Gaps = 62/283 (21%)

Query: 66  VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAF 125
           V  V+AG  HS+ +T  G VW WG+        G +   +    P RV+GLD V + A  
Sbjct: 153 VRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDITQISV---PVRVQGLDMVRLIAVG 205

Query: 126 ASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHAL 185
           A    + A+ +DG+LW WG ++ GQLG G D      P  V+ L+G  +V ++ G  H+ 
Sbjct: 206 A--FHNLALQEDGTLWAWGNNEYGQLGTG-DTQPRSQPIPVQGLSGLTLVDIAAGGWHST 262

Query: 186 AQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEG 245
           A T++G+++GWG    GR+G             N                +K+ K+V + 
Sbjct: 263 ALTDNGEVYGWGRGEHGRLG----------FGDN----------------DKSSKMVPQK 296

Query: 246 MEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGR-EKQDMG 304
           ++            L+ G E+V I+CG  HS+ +  +G + S G   +G+LG   K   G
Sbjct: 297 VQ------------LLSGEEIVQISCGGTHSVAVTSDGRMFSFGRGDHGRLGYGRKVTTG 344

Query: 305 M---FPVDI--------NFHPVS--ISSGLGHSLAICEVRSSN 334
                P+DI        N H ++  ++ G  H+LA+ + +S +
Sbjct: 345 QPEEVPIDIPPPRGRTENGHWIAKLVACGGRHTLALVQWKSED 387



 Score = 87.8 bits (216), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 85/282 (30%), Positives = 128/282 (45%), Gaps = 35/282 (12%)

Query: 84  AVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVW 143
           A+ AWG   + QLG G  E R  W     ++ L+  NVC+  A    S AI +DG L+ W
Sbjct: 6   AIIAWGSGEDGQLGLGNNEER-EWV--CAIKALESQNVCSVVAGSRNSLAITEDGKLFTW 62

Query: 144 GKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGR 203
           G ++RG LG         VPS+V+AL+  KIV+ + G  H LA  + G+ + WG +  G+
Sbjct: 63  GWNQRGTLGHPAGTKSENVPSQVKALSNVKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQ 122

Query: 204 IGNLGKALESSPLDSNIDRSSESDQEISSSTIEK--AQKLVSEG-----MEKEKY----- 251
            G      E      N  R    D  I      K   +++ + G     + +E +     
Sbjct: 123 CG------EEPEKKDNTGRPPRRDIAIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWG 176

Query: 252 -------MPIIWEPFLVEGVEVVD-IACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDM 303
                  +  I  P  V+G+++V  IA G  H+L L  +G L + G+N YGQLG      
Sbjct: 177 QPWPPGDITQISVPVRVQGLDMVRLIAVGAFHNLALQEDGTLWAWGNNEYGQLGTGDTQP 236

Query: 304 GMFPVDIN----FHPVSISSGLGHSLAICEVRSSNVTGGARG 341
              P+ +        V I++G  HS A+ +  +  V G  RG
Sbjct: 237 RSQPIPVQGLSGLTLVDIAAGGWHSTALTD--NGEVYGWGRG 276



 Score = 72.4 bits (176), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 102/380 (26%), Positives = 165/380 (43%), Gaps = 52/380 (13%)

Query: 24  ASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPS----DVTSVSAGHYHSLAV 79
           A+GTA++++G G  G LGL        G+  E   V  + +    +V SV AG  +SLA+
Sbjct: 2   AAGTAIIAWGSGEDGQLGL--------GNNEEREWVCAIKALESQNVCSVVAGSRNSLAI 53

Query: 80  TNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGS 139
           T +G ++ WG N    LG  A     + N P +V+ L  V +  A   G    A+ D G 
Sbjct: 54  TEDGKLFTWGWNQRGTLGHPA--GTKSENVPSQVKALSNVKIVQAAIGGWHCLAVDDQGR 111

Query: 140 LWVWGKSKRGQLG---LGKDIT------EAIVPSRVEALAGEKIVK-VSFGWGHALAQTE 189
            + WG ++ GQ G     KD T      +  +P R    A + IV+ V+ G  H++  T 
Sbjct: 112 AYAWGGNEYGQCGEEPEKKDNTGRPPRRDIAIPQRC---APKLIVRQVAAGGTHSVVLTR 168

Query: 190 DGKLFGWGYS-ADGRIGNLGKALESSPLD--------SNIDRSSESDQEI-SSSTIEKAQ 239
           +G ++ WG     G I  +   +    LD        +  + + + D  + +    E  Q
Sbjct: 169 EGHVWTWGQPWPPGDITQISVPVRVQGLDMVRLIAVGAFHNLALQEDGTLWAWGNNEYGQ 228

Query: 240 KLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGRE 299
               +   + + +P+      + G+ +VDIA G  HS  L  NG +   G   +G+LG  
Sbjct: 229 LGTGDTQPRSQPIPV----QGLSGLTLVDIAAGGWHSTALTDNGEVYGWGRGEHGRLGFG 284

Query: 300 KQDMG--MFPVDINF----HPVSISSGLGHSLAIC-EVRSSNVTGGARGIVSWGWNRSSQ 352
             D    M P  +        V IS G  HS+A+  + R  +   G  G + +G  R   
Sbjct: 285 DNDKSSKMVPQKVQLLSGEEIVQISCGGTHSVAVTSDGRMFSFGRGDHGRLGYG--RKVT 342

Query: 353 LGRMGPDNVPLVVEGLEGES 372
            G+  P+ VP+ +    G +
Sbjct: 343 TGQ--PEEVPIDIPPPRGRT 360


>gi|449481449|ref|XP_004156186.1| PREDICTED: LOW QUALITY PROTEIN: probable E3 ubiquitin-protein
           ligase HERC1-like [Cucumis sativus]
          Length = 390

 Score =  104 bits (260), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 62/167 (37%), Positives = 97/167 (58%), Gaps = 5/167 (2%)

Query: 56  PTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEG 115
           P RV GL   V  ++ G +H+LA+  +G +WAWG N   QLG G  + R+    P  V+G
Sbjct: 190 PVRVQGL-DMVRLIAVGAFHNLALQEDGTLWAWGNNEYGQLGTGDTQPRS---QPIPVQG 245

Query: 116 LDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLG-KDITEAIVPSRVEALAGEKI 174
           L  + +    A G  S+A+ D+G ++ WG+ + G+LG G  D +  +VP +V+ L+GE+I
Sbjct: 246 LSGLTLVDIAAGGWHSTALTDNGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVQLLSGEEI 305

Query: 175 VKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNID 221
           V++S G  H++A T DG++F +G    GR+G   K     P +  ID
Sbjct: 306 VQISCGGTHSVAVTSDGRMFSFGRGDHGRLGYGRKVTTGQPEEVPID 352



 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 77/263 (29%), Positives = 123/263 (46%), Gaps = 50/263 (19%)

Query: 66  VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAF 125
           V  V+AG  HS+ +T  G VW WG+        G +   +    P RV+GLD V + A  
Sbjct: 153 VRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDITQISV---PVRVQGLDMVRLIAVG 205

Query: 126 ASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHAL 185
           A    + A+ +DG+LW WG ++ GQLG G D      P  V+ L+G  +V ++ G  H+ 
Sbjct: 206 A--FHNLALQEDGTLWAWGNNEYGQLGTG-DTQPRSQPIPVQGLSGLTLVDIAAGGWHST 262

Query: 186 AQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEG 245
           A T++G+++GWG    GR+G             N                +K+ K+V + 
Sbjct: 263 ALTDNGEVYGWGRGEHGRLG----------FGDN----------------DKSSKMVPQK 296

Query: 246 MEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGM 305
           ++            L+ G E+V I+CG  HS+ +  +G + S G   +G+LG  ++    
Sbjct: 297 VQ------------LLSGEEIVQISCGGTHSVAVTSDGRMFSFGRGDHGRLGYGRKVTTG 344

Query: 306 FP--VDINFHPVSISSGLGHSLA 326
            P  V I+  P    +  GH +A
Sbjct: 345 QPEEVPIDIPPPRGRTENGHWIA 367



 Score = 87.8 bits (216), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 85/282 (30%), Positives = 128/282 (45%), Gaps = 35/282 (12%)

Query: 84  AVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVW 143
           A+ AWG   + QLG G  E R  W     ++ L+  NVC+  A    S AI +DG L+ W
Sbjct: 6   AIIAWGSGEDGQLGLGNNEER-EWV--CAIKALESQNVCSVVAGSRNSLAITEDGKLFTW 62

Query: 144 GKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGR 203
           G ++RG LG         VPS+V+AL+  KIV+ + G  H LA  + G+ + WG +  G+
Sbjct: 63  GWNQRGTLGHPAGTKSENVPSQVKALSNVKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQ 122

Query: 204 IGNLGKALESSPLDSNIDRSSESDQEISSSTIEK--AQKLVSEG-----MEKEKY----- 251
            G      E      N  R    D  I      K   +++ + G     + +E +     
Sbjct: 123 CG------EEPEKKDNTGRPPRRDIAIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWG 176

Query: 252 -------MPIIWEPFLVEGVEVVD-IACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDM 303
                  +  I  P  V+G+++V  IA G  H+L L  +G L + G+N YGQLG      
Sbjct: 177 QPWPPGDITQISVPVRVQGLDMVRLIAVGAFHNLALQEDGTLWAWGNNEYGQLGTGDTQP 236

Query: 304 GMFPVDIN----FHPVSISSGLGHSLAICEVRSSNVTGGARG 341
              P+ +        V I++G  HS A+ +  +  V G  RG
Sbjct: 237 RSQPIPVQGLSGLTLVDIAAGGWHSTALTD--NGEVYGWGRG 276



 Score = 72.4 bits (176), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 102/380 (26%), Positives = 165/380 (43%), Gaps = 52/380 (13%)

Query: 24  ASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPS----DVTSVSAGHYHSLAV 79
           A+GTA++++G G  G LGL        G+  E   V  + +    +V SV AG  +SLA+
Sbjct: 2   AAGTAIIAWGSGEDGQLGL--------GNNEEREWVCAIKALESQNVCSVVAGSRNSLAI 53

Query: 80  TNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGS 139
           T +G ++ WG N    LG  A     + N P +V+ L  V +  A   G    A+ D G 
Sbjct: 54  TEDGKLFTWGWNQRGTLGHPA--GTKSENVPSQVKALSNVKIVQAAIGGWHCLAVDDQGR 111

Query: 140 LWVWGKSKRGQLG---LGKDIT------EAIVPSRVEALAGEKIVK-VSFGWGHALAQTE 189
            + WG ++ GQ G     KD T      +  +P R    A + IV+ V+ G  H++  T 
Sbjct: 112 AYAWGGNEYGQCGEEPEKKDNTGRPPRRDIAIPQRC---APKLIVRQVAAGGTHSVVLTR 168

Query: 190 DGKLFGWGYS-ADGRIGNLGKALESSPLD--------SNIDRSSESDQEI-SSSTIEKAQ 239
           +G ++ WG     G I  +   +    LD        +  + + + D  + +    E  Q
Sbjct: 169 EGHVWTWGQPWPPGDITQISVPVRVQGLDMVRLIAVGAFHNLALQEDGTLWAWGNNEYGQ 228

Query: 240 KLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGRE 299
               +   + + +P+      + G+ +VDIA G  HS  L  NG +   G   +G+LG  
Sbjct: 229 LGTGDTQPRSQPIPV----QGLSGLTLVDIAAGGWHSTALTDNGEVYGWGRGEHGRLGFG 284

Query: 300 KQDMG--MFPVDINF----HPVSISSGLGHSLAIC-EVRSSNVTGGARGIVSWGWNRSSQ 352
             D    M P  +        V IS G  HS+A+  + R  +   G  G + +G  R   
Sbjct: 285 DNDKSSKMVPQKVQLLSGEEIVQISCGGTHSVAVTSDGRMFSFGRGDHGRLGYG--RKVT 342

Query: 353 LGRMGPDNVPLVVEGLEGES 372
            G+  P+ VP+ +    G +
Sbjct: 343 TGQ--PEEVPIDIPPPRGRT 360


>gi|26327145|dbj|BAC27316.1| unnamed protein product [Mus musculus]
          Length = 551

 Score =  104 bits (259), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 59/151 (39%), Positives = 89/151 (58%), Gaps = 5/151 (3%)

Query: 66  VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAF 125
           V  V+ G YHSL +T++G V+AWG NN  Q+G G   S A    P+RV G  Q  V    
Sbjct: 154 VIEVACGSYHSLVLTSDGEVFAWGYNNSGQVGSG---STANQPIPRRVTGCLQNKVVMNI 210

Query: 126 ASG-VVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHA 184
           + G + S A+ D G ++VWG +  GQLGLG    +   P RV AL G ++ +V+ G+ H 
Sbjct: 211 SCGQMCSMAVVDTGEVYVWGYNGNGQLGLGSSGNQP-TPCRVAALQGIRVQRVACGYAHT 269

Query: 185 LAQTEDGKLFGWGYSADGRIGNLGKALESSP 215
           L  T++G+++ WG ++ G++G   K+ +S P
Sbjct: 270 LVLTDEGQIYAWGANSYGQLGTGNKSNQSYP 300



 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 72/289 (24%), Positives = 128/289 (44%), Gaps = 25/289 (8%)

Query: 77  LAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCA-AFASGVVSSAIG 135
           L  T N  ++  G N    LG G ++S     +P+R++ L    + + ++ SG       
Sbjct: 59  LYTTVNDEIFVLGTNCSGCLGVGDIQSTI---EPRRLDSLTGKKIASLSYGSGPHIVLAT 115

Query: 136 DDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEA-LAGEKIVKVSFGWGHALAQTEDGKLF 194
            DG ++ WG +   QLG G      +VP  +   L+ +++++V+ G  H+L  T DG++F
Sbjct: 116 TDGEVFTWGHNAYSQLGNGT-TNHGLVPCHISTNLSNKQVIEVACGSYHSLVLTSDGEVF 174

Query: 195 GWGYSADGRIGNLGKALESSP------LDSNIDRSSESDQEISSSTIEKAQKLV------ 242
            WGY+  G++G+   A +  P      L + +  +    Q  S + ++  +  V      
Sbjct: 175 AWGYNNSGQVGSGSTANQPIPRRVTGCLQNKVVMNISCGQMCSMAVVDTGEVYVWGYNGN 234

Query: 243 -SEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQ 301
              G+      P       ++G+ V  +ACG+ H+LVL   G + + G+N YGQLG   +
Sbjct: 235 GQLGLGSSGNQPTPCRVAALQGIRVQRVACGYAHTLVLTDEGQIYAWGANSYGQLGTGNK 294

Query: 302 DMGMFPVDINFHPVSISSGLGHSLAICEVRSSNVTGGARG-IVSWGWNR 349
               +P      PV +       +A C    ++      G +  WG  R
Sbjct: 295 SNQSYPT-----PVVVEKDRIIEIAACHSAHTSAAKTQGGHVYMWGQCR 338



 Score = 64.7 bits (156), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 69/270 (25%), Positives = 117/270 (43%), Gaps = 63/270 (23%)

Query: 111 KRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALA 170
           + ++ + Q  V  +  + V+ + + D+  ++V G +  G LG+G DI   I P R+++L 
Sbjct: 40  EELQLIRQACVFGSAGNEVLYTTVNDE--IFVLGTNCSGCLGVG-DIQSTIEPRRLDSLT 96

Query: 171 GEKIVKVSFGWG-HALAQTEDGKLFGWGYSADGRIGN--LGKALESSPLDSNIDRSSESD 227
           G+KI  +S+G G H +  T DG++F WG++A  ++GN      L    + +N+       
Sbjct: 97  GKKIASLSYGSGPHIVLATTDGEVFTWGHNAYSQLGNGTTNHGLVPCHISTNLSNK---- 152

Query: 228 QEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLS 287
                                                +V+++ACG  HSLVL  +G + +
Sbjct: 153 -------------------------------------QVIEVACGSYHSLVLTSDGEVFA 175

Query: 288 CGSNVYGQLGREKQDMGMFPVDI-----NFHPVSISSGLGHSLAICEVRSSNVTGGARGI 342
            G N  GQ+G         P  +     N   ++IS G   S+A+ +      TG    +
Sbjct: 176 WGYNNSGQVGSGSTANQPIPRRVTGCLQNKVVMNISCGQMCSMAVVD------TGE---V 226

Query: 343 VSWGWNRSSQ--LGRMGPDNVPLVVEGLEG 370
             WG+N + Q  LG  G    P  V  L+G
Sbjct: 227 YVWGYNGNGQLGLGSSGNQPTPCRVAALQG 256


>gi|91203943|emb|CAJ71596.1| similar to regulator of chromosome condensation [Candidatus
           Kuenenia stuttgartiensis]
          Length = 387

 Score =  104 bits (259), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 87/261 (33%), Positives = 132/261 (50%), Gaps = 21/261 (8%)

Query: 49  VGGDAYEPTRVPGLP---SDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRA 105
           +G  +Y+ + +P      S + ++S G  H+LA+ ++G VWAWG N++ QLG G  +++ 
Sbjct: 119 LGDGSYKSSNIPIKTKELSGIIAISCGGQHNLALKSDGTVWAWGINDKGQLGIGDAKNQQ 178

Query: 106 TWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSR 165
               P R+ GL+  N+ A  A G  S AI  DGSLW WG +   QLG G   T    P  
Sbjct: 179 I---PIRIPGLN--NIVAISAGGYHSLAIKSDGSLWAWGSNNMEQLGDGS-ATNRCSPVH 232

Query: 166 VEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYS-----ADGRIGNLGKALESSPLDSNI 220
           V  L    I+ V+ G   +LA   DG +  WG +      DG   N    +  S +   I
Sbjct: 233 VSNL--RDIIAVNGGGDFSLALKSDGTIMAWGSNGLSQLGDGTTTNRNTPVNVSDVRDII 290

Query: 221 DRSSESDQEISSSTIEKAQKLVSEG---MEKEKYMPIIWEPFLV-EGVEVVDIACGFDHS 276
           + +++ +  ++ +   K  +  S G    EKE  +P  + P LV E  +V+ IACG  H+
Sbjct: 291 EIAAKGNHSLALTIEGKVWEFGSIGATPTEKEVTLP-AYRPVLVNEITDVIAIACGEFHN 349

Query: 277 LVLGRNGVLLSCGSNVYGQLG 297
           +VL  +G L   G N +GQLG
Sbjct: 350 VVLKNDGSLWVWGINNFGQLG 370



 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 76/275 (27%), Positives = 136/275 (49%), Gaps = 30/275 (10%)

Query: 69  VSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASG 128
           ++AG +H+LA+  +G++W+WG+N   QLG G ++++   + P +V+ L  + V    A  
Sbjct: 42  IAAGAFHTLALKPDGSLWSWGKNEYGQLGDGTIKNK---HSPVQVKHLSSIIVIDGGAWH 98

Query: 129 VVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQT 188
             S A+  DG++W WG +  GQLG G     + +P + + L+G  I+ +S G  H LA  
Sbjct: 99  --SIALKSDGTVWAWGGNWAGQLGDGS-YKSSNIPIKTKELSG--IIAISCGGQHNLALK 153

Query: 189 EDGKLFGWGYSADGRIGNLGKALESS-----PLDSNIDRSS---------ESDQEISSST 234
            DG ++ WG +  G++G +G A         P  +NI   S         +SD  + +  
Sbjct: 154 SDGTVWAWGINDKGQLG-IGDAKNQQIPIRIPGLNNIVAISAGGYHSLAIKSDGSLWAWG 212

Query: 235 IEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYG 294
               ++L  +G    +  P+     +    +++ +  G D SL L  +G +++ GSN   
Sbjct: 213 SNNMEQL-GDGSATNRCSPV----HVSNLRDIIAVNGGGDFSLALKSDGTIMAWGSNGLS 267

Query: 295 QLGREKQDMGMFPVDIN--FHPVSISSGLGHSLAI 327
           QLG         PV+++     + I++   HSLA+
Sbjct: 268 QLGDGTTTNRNTPVNVSDVRDIIEIAAKGNHSLAL 302



 Score = 68.9 bits (167), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 63/228 (27%), Positives = 100/228 (43%), Gaps = 64/228 (28%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYE---PTRVPGLPSDVTSVSAGHYHSLAVTNNGAV 85
           V ++G   +G LG+        GDA     P R+PGL +++ ++SAG YHSLA+ ++G++
Sbjct: 158 VWAWGINDKGQLGI--------GDAKNQQIPIRIPGL-NNIVAISAGGYHSLAIKSDGSL 208

Query: 86  WAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGK 145
           WAWG NN  QLG G+  +R +   P  V  L   ++ A    G  S A+  DG++  WG 
Sbjct: 209 WAWGSNNMEQLGDGSATNRCS---PVHVSNLR--DIIAVNGGGDFSLALKSDGTIMAWGS 263

Query: 146 SKRGQLGLG--------------KDITE-------------------------------A 160
           +   QLG G              +DI E                                
Sbjct: 264 NGLSQLGDGTTTNRNTPVNVSDVRDIIEIAAKGNHSLALTIEGKVWEFGSIGATPTEKEV 323

Query: 161 IVPSRVEALAGE--KIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGN 206
            +P+    L  E   ++ ++ G  H +    DG L+ WG +  G++G+
Sbjct: 324 TLPAYRPVLVNEITDVIAIACGEFHNVVLKNDGSLWVWGINNFGQLGD 371



 Score = 45.8 bits (107), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 23/67 (34%), Positives = 40/67 (59%), Gaps = 1/67 (1%)

Query: 38  GALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLG 97
           G++G   +   V   AY P  V  + +DV +++ G +H++ + N+G++W WG NN  QLG
Sbjct: 312 GSIGATPTEKEVTLPAYRPVLVNEI-TDVIAIACGEFHNVVLKNDGSLWVWGINNFGQLG 370

Query: 98  RGALESR 104
            G + S+
Sbjct: 371 DGTVGSK 377



 Score = 43.5 bits (101), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 56/194 (28%), Positives = 86/194 (44%), Gaps = 29/194 (14%)

Query: 176 KVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSN-------IDRSS---- 224
           K++ G  H LA   DG L+ WG +  G++G+     + SP+          ID  +    
Sbjct: 41  KIAAGAFHTLALKPDGSLWSWGKNEYGQLGDGTIKNKHSPVQVKHLSSIIVIDGGAWHSI 100

Query: 225 --ESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRN 282
             +SD  + +     A +L  +G  K   +PI  +    E   ++ I+CG  H+L L  +
Sbjct: 101 ALKSDGTVWAWGGNWAGQL-GDGSYKSSNIPIKTK----ELSGIIAISCGGQHNLALKSD 155

Query: 283 GVLLSCGSNVYGQLGREKQDMGMFPVDIN--FHPVSISSGLGHSLAICEVRSSNVTGGAR 340
           G + + G N  GQLG         P+ I    + V+IS+G  HSLAI    S        
Sbjct: 156 GTVWAWGINDKGQLGIGDAKNQQIPIRIPGLNNIVAISAGGYHSLAIKSDGS-------- 207

Query: 341 GIVSWGWNRSSQLG 354
            + +WG N   QLG
Sbjct: 208 -LWAWGSNNMEQLG 220



 Score = 41.2 bits (95), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 43/90 (47%), Gaps = 5/90 (5%)

Query: 65  DVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAA 124
           D+  ++A   HSLA+T  G VW +G      +G    E   T    + V   +  +V A 
Sbjct: 288 DIIEIAAKGNHSLALTIEGKVWEFG-----SIGATPTEKEVTLPAYRPVLVNEITDVIAI 342

Query: 125 FASGVVSSAIGDDGSLWVWGKSKRGQLGLG 154
                 +  + +DGSLWVWG +  GQLG G
Sbjct: 343 ACGEFHNVVLKNDGSLWVWGINNFGQLGDG 372


>gi|291296242|ref|YP_003507640.1| chromosome condensation regulator RCC1 [Meiothermus ruber DSM 1279]
 gi|290471201|gb|ADD28620.1| regulator of chromosome condensation RCC1 [Meiothermus ruber DSM
           1279]
          Length = 593

 Score =  104 bits (259), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 97/321 (30%), Positives = 148/321 (46%), Gaps = 72/321 (22%)

Query: 62  LPSDVTSVS--AGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQV 119
           LP+ + +V+  AG YHSLA+T+ G V+AWGRN+  QLG G +   A    P  + GL  V
Sbjct: 325 LPAGIKAVAVQAGRYHSLALTSEGTVYAWGRNDVGQLGLGTIT--APQESPALIPGLSDV 382

Query: 120 NVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSF 179
              AA     +  A+  DGS+W WG +  G+LG G DIT   VP+ V  L G K   ++ 
Sbjct: 383 IALAAGDDHTL--ALKADGSVWAWGDNPNGELGTG-DITPYSVPTAVSNLPGVK--AIAA 437

Query: 180 GWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQ 239
           G  H++A   DG +  WGY+  G++GN       S  +SN+                   
Sbjct: 438 GGNHSVALLADGTVRTWGYNNHGQLGN------GSNTNSNV------------------- 472

Query: 240 KLVSEGMEKEKYMPIIWEPFLVEGV-EVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGR 298
                             P  V G+ +VV IA G++ +L +  NG + + G +   QLG 
Sbjct: 473 ------------------PVPVTGLTDVVGIAAGYEFTLAVLSNGSVKAWGHDDSFQLGN 514

Query: 299 -EKQDMGMFPVDINFHPV-----SISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQ 352
                    PVD+   P       +++G+ H+LA+ +  S         +V+WG N   Q
Sbjct: 515 GATTGDQTTPVDVQGIPTGRSVRGLTAGIFHALALLDDGS---------MVAWGSNVQGQ 565

Query: 353 LGRMGPDNV----PLVVEGLE 369
           LG   P++     P+ + G++
Sbjct: 566 LGDGTPNSSDTAKPVSITGVQ 586



 Score = 78.6 bits (192), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 89/318 (27%), Positives = 135/318 (42%), Gaps = 80/318 (25%)

Query: 68  SVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALE-SRATWNDPKRVEGLDQVNVCAAFA 126
           +++AG Y S A+  NG VW+WG N   QLGR     S +T      +   D V++     
Sbjct: 225 TLAAGGYFSAAIKPNGQVWSWGDNTYGQLGRATTSPSDSTPTQASLIN--DAVSISLGEY 282

Query: 127 SGVVSSAIGDDGSLWVWGKSKRGQLGLG----------KDITEAIVPSRVEALAGEKIVK 176
             +   A+ +DG +   G+   GQLG G           ++ + I+P      AG K V 
Sbjct: 283 HAI---ALTNDGRVVTLGRDDYGQLGDGPGDSSGTHTAPNLRDNILP------AGIKAVA 333

Query: 177 VSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIE 236
           V  G  H+LA T +G ++ WG +  G++G LG                         TI 
Sbjct: 334 VQAGRYHSLALTSEGTVYAWGRNDVGQLG-LG-------------------------TIT 367

Query: 237 KAQKLVSEGMEKEKYMPIIWEPFLVEGV-EVVDIACGFDHSLVLGRNGVLLSCGSNVYGQ 295
             Q+                 P L+ G+ +V+ +A G DH+L L  +G + + G N  G+
Sbjct: 368 APQE----------------SPALIPGLSDVIALAAGDDHTLALKADGSVWAWGDNPNGE 411

Query: 296 LGREKQDMGMFPVDINFHP--VSISSGLGHSLAICEVRSSNVTGGARGIV-SWGWNRSSQ 352
           LG         P  ++  P   +I++G  HS+A+           A G V +WG+N   Q
Sbjct: 412 LGTGDITPYSVPTAVSNLPGVKAIAAGGNHSVALL----------ADGTVRTWGYNNHGQ 461

Query: 353 LGR--MGPDNVPLVVEGL 368
           LG       NVP+ V GL
Sbjct: 462 LGNGSNTNSNVPVPVTGL 479



 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 53/153 (34%), Positives = 77/153 (50%), Gaps = 9/153 (5%)

Query: 56  PTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEG 115
           PT V  LP  V +++AG  HS+A+  +G V  WG NN  QLG G   S    N P  V G
Sbjct: 423 PTAVSNLPG-VKAIAAGGNHSVALLADGTVRTWGYNNHGQLGNG---SNTNSNVPVPVTG 478

Query: 116 L-DQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEAL-AGEK 173
           L D V + A +     + A+  +GS+  WG     QLG G    +   P  V+ +  G  
Sbjct: 479 LTDVVGIAAGYE---FTLAVLSNGSVKAWGHDDSFQLGNGATTGDQTTPVDVQGIPTGRS 535

Query: 174 IVKVSFGWGHALAQTEDGKLFGWGYSADGRIGN 206
           +  ++ G  HALA  +DG +  WG +  G++G+
Sbjct: 536 VRGLTAGIFHALALLDDGSMVAWGSNVQGQLGD 568



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 39/101 (38%), Positives = 57/101 (56%), Gaps = 4/101 (3%)

Query: 56  PTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEG 115
           P  V GL +DV  ++AG+  +LAV +NG+V AWG ++  QLG GA     T   P  V+G
Sbjct: 473 PVPVTGL-TDVVGIAAGYEFTLAVLSNGSVKAWGHDDSFQLGNGATTGDQT--TPVDVQG 529

Query: 116 LDQVNVCAAFASGVVSS-AIGDDGSLWVWGKSKRGQLGLGK 155
           +          +G+  + A+ DDGS+  WG + +GQLG G 
Sbjct: 530 IPTGRSVRGLTAGIFHALALLDDGSMVAWGSNVQGQLGDGT 570



 Score = 58.5 bits (140), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 65/255 (25%), Positives = 105/255 (41%), Gaps = 61/255 (23%)

Query: 126 ASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHAL 185
           A G  S+AI  +G +W WG +  GQLG          P++   +     V +S G  HA+
Sbjct: 228 AGGYFSAAIKPNGQVWSWGDNTYGQLGRATTSPSDSTPTQASLI--NDAVSISLGEYHAI 285

Query: 186 AQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEG 245
           A T DG++   G    G++G+        P DS+   ++                     
Sbjct: 286 ALTNDGRVVTLGRDDYGQLGD-------GPGDSSGTHTA--------------------- 317

Query: 246 MEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLG-----REK 300
                  P + +  L  G++ V +  G  HSL L   G + + G N  GQLG       +
Sbjct: 318 -------PNLRDNILPAGIKAVAVQAGRYHSLALTSEGTVYAWGRNDVGQLGLGTITAPQ 370

Query: 301 QDMGMFP--VDINFHPVSISSGLGHSLAICEVRSSNVTGGARGIV-SWGWNRSSQLGR-- 355
           +   + P   D+    +++++G  H+LA+           A G V +WG N + +LG   
Sbjct: 371 ESPALIPGLSDV----IALAAGDDHTLALK----------ADGSVWAWGDNPNGELGTGD 416

Query: 356 MGPDNVPLVVEGLEG 370
           + P +VP  V  L G
Sbjct: 417 ITPYSVPTAVSNLPG 431



 Score = 42.4 bits (98), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 29/76 (38%), Positives = 43/76 (56%), Gaps = 4/76 (5%)

Query: 51  GDAYEPTRVPGLPS--DVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWN 108
           GD   P  V G+P+   V  ++AG +H+LA+ ++G++ AWG N + QLG G   S  T  
Sbjct: 519 GDQTTPVDVQGIPTGRSVRGLTAGIFHALALLDDGSMVAWGSNVQGQLGDGTPNSSDTAK 578

Query: 109 DPKRVEGLDQVNVCAA 124
            P  + G+ QV   AA
Sbjct: 579 -PVSITGV-QVPPTAA 592


>gi|444916978|ref|ZP_21237086.1| BNR repeat domain protein [Cystobacter fuscus DSM 2262]
 gi|444711624|gb|ELW52563.1| BNR repeat domain protein [Cystobacter fuscus DSM 2262]
          Length = 734

 Score =  104 bits (259), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 123/406 (30%), Positives = 181/406 (44%), Gaps = 89/406 (21%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAW 88
           V ++G   QG LG  T +     D+  P RV  L S V SV++G YHSL ++++G VWAW
Sbjct: 57  VWAWGFNRQGQLGDGTLV-----DSPTPVRVTNL-SGVVSVASGDYHSLGLSSDGTVWAW 110

Query: 89  GRNNEVQLGRG----------------------------ALESRAT---WND-------- 109
           G N   QLG G                            AL S  T   W D        
Sbjct: 111 GDNTAGQLGNGTASASPVPVRVQNLSGVVSLGSGFSHGLALRSDGTVWAWGDNRYNQLGN 170

Query: 110 --------PKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAI 161
                   P +V GL    V A  A G  S A+  DG++W WG ++ GQLG G   T+  
Sbjct: 171 VGATRSNLPVQVPGLS--GVIAVVAGGYYSLALRSDGTVWAWGDNRYGQLGDGT-TTQRA 227

Query: 162 VPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNID 221
           VP +V  L+G  ++ +S G  H +A   DG ++ WG++A G++G+        P+   + 
Sbjct: 228 VPVQVLNLSG--VMNLSAGSFHTVALRSDGSVWAWGFNAYGQLGDGTTTSRFQPVQVGLS 285

Query: 222 R------------SSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDI 269
                        +  SD  + +    + ++L  +G      +P+  +  L  GV +V  
Sbjct: 286 DVLTLVAGNYHSLAVRSDGAVWAWGDNRYRQL-GDGTTTSSRVPV--QSGLSGGVTLV-- 340

Query: 270 ACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFHPV---SISSGLGHSLA 326
             G+ HSLVL  +G + S G NV+GQLG    +     V +++  +    +SSG  HS+ 
Sbjct: 341 -AGYKHSLVLRSDGTVWSWGDNVFGQLGDGTFNPRSSAVKVSWLSLGRADVSSGQLHSV- 398

Query: 327 ICEVRSSNVTGGARGIVSWGWNRSSQLGR-MGPDNVPLVVEGLEGE 371
              V  SN   GA  + +WG N S QLG   G D++     GL G 
Sbjct: 399 ---VLDSN---GA--VWAWGDNYSGQLGNGTGLDSLVAAPVGLGGS 436



 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 96/313 (30%), Positives = 147/313 (46%), Gaps = 52/313 (16%)

Query: 64  SDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCA 123
           S    ++ G YHS+ V ++G VWAWG N + QLG G L    T   P RV  L       
Sbjct: 36  SSAARLALGQYHSVGVHSDGTVWAWGFNRQGQLGDGTLVDSPT---PVRVTNL------- 85

Query: 124 AFASGVVSSAIGD--------DGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIV 175
              SGVVS A GD        DG++W WG +  GQLG G   + + VP RV+ L+G  +V
Sbjct: 86  ---SGVVSVASGDYHSLGLSSDGTVWAWGDNTAGQLGNGT-ASASPVPVRVQNLSG--VV 139

Query: 176 KVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLD-------------SNIDR 222
            +  G+ H LA   DG ++ WG +   ++GN+G    + P+                   
Sbjct: 140 SLGSGFSHGLALRSDGTVWAWGDNRYNQLGNVGATRSNLPVQVPGLSGVIAVVAGGYYSL 199

Query: 223 SSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRN 282
           +  SD  + +    +  +L  +G   ++ +P+  +   + G  V++++ G  H++ L  +
Sbjct: 200 ALRSDGTVWAWGDNRYGQL-GDGTTTQRAVPV--QVLNLSG--VMNLSAGSFHTVALRSD 254

Query: 283 GVLLSCGSNVYGQLGREKQDMGMFPVDINFHPV-SISSGLGHSLAICEVRSSNVTGGARG 341
           G + + G N YGQLG         PV +    V ++ +G  HSLA   VRS         
Sbjct: 255 GSVWAWGFNAYGQLGDGTTTSRFQPVQVGLSDVLTLVAGNYHSLA---VRSDGA------ 305

Query: 342 IVSWGWNRSSQLG 354
           + +WG NR  QLG
Sbjct: 306 VWAWGDNRYRQLG 318



 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 109/348 (31%), Positives = 153/348 (43%), Gaps = 71/348 (20%)

Query: 28  AVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWA 87
           AV ++GD   G LG      G G D+     V GL   V +VSAG  H+L +  +  VWA
Sbjct: 405 AVWAWGDNYSGQLG-----NGTGLDSLVAAPV-GLGGSV-AVSAGFKHTLVLKADTTVWA 457

Query: 88  WGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSK 147
           WG N   QLG G L  R     P +V GL    V A  A    S A+  +G++W WG ++
Sbjct: 458 WGVNEHGQLGDGTLTDRTR---PVQVAGLS--GVSAVSAGSYHSLALRSNGTVWAWGFNR 512

Query: 148 RGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNL 207
            GQLG G + T+ + P +V  L+G  +V V+ G  H+LA   DG ++ WGY+ DG+IG  
Sbjct: 513 YGQLGDGTN-TDRLQPVQVAGLSG--VVAVAAGDSHSLALRSDGTVWAWGYNFDGQIG-- 567

Query: 208 GKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVV 267
                                               +G    +++P+     +     V 
Sbjct: 568 ------------------------------------DGSYSWRFLPV---QVVGLSGVVS 588

Query: 268 DIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGM-FPVDINFHP--VSISSGLGHS 324
             A G+ HSL L  +G + + G N  GQLG     +    PV +      VS+ SG  HS
Sbjct: 589 VSAGGY-HSLALRSDGTVWTWGYNGSGQLGDGSTAINKPAPVQVAGLSGVVSLGSGNYHS 647

Query: 325 LAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPDN--VPLVVEGLEG 370
           L +   RS         + +WG+N   QLG     N   P+ V GL G
Sbjct: 648 LGL---RSDGT------VWAWGFNFDGQLGDGSLLNRSTPVRVSGLSG 686



 Score = 88.6 bits (218), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 96/311 (30%), Positives = 149/311 (47%), Gaps = 30/311 (9%)

Query: 54  YEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRV 113
           ++P +V GL SDV ++ AG+YHSLAV ++GAVWAWG N   QLG G   S      P + 
Sbjct: 277 FQPVQV-GL-SDVLTLVAGNYHSLAVRSDGAVWAWGDNRYRQLGDGTTTSSRV---PVQS 331

Query: 114 EGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEK 173
                V + A +   +V   +  DG++W WG +  GQLG G          +V  L+  +
Sbjct: 332 GLSGGVTLVAGYKHSLV---LRSDGTVWSWGDNVFGQLGDGT-FNPRSSAVKVSWLSLGR 387

Query: 174 IVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALES---SP--LDSNIDRSSESDQ 228
              VS G  H++    +G ++ WG +  G++GN G  L+S   +P  L  ++  S+    
Sbjct: 388 -ADVSSGQLHSVVLDSNGAVWAWGDNYSGQLGN-GTGLDSLVAAPVGLGGSVAVSAGFKH 445

Query: 229 E--ISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVE-VVDIACGFDHSLVLGRNGVL 285
              + + T   A  +   G   +  +     P  V G+  V  ++ G  HSL L  NG +
Sbjct: 446 TLVLKADTTVWAWGVNEHGQLGDGTLTDRTRPVQVAGLSGVSAVSAGSYHSLALRSNGTV 505

Query: 286 LSCGSNVYGQLGREKQDMGMFPVDINFHP--VSISSGLGHSLAICEVRSSNVTGGARGIV 343
            + G N YGQLG       + PV +      V++++G  HSLA+   RS         + 
Sbjct: 506 WAWGFNRYGQLGDGTNTDRLQPVQVAGLSGVVAVAAGDSHSLAL---RSDGT------VW 556

Query: 344 SWGWNRSSQLG 354
           +WG+N   Q+G
Sbjct: 557 AWGYNFDGQIG 567



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 78/262 (29%), Positives = 118/262 (45%), Gaps = 52/262 (19%)

Query: 48  GVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATW 107
           G   D  +P +V GL S V +V+AG  HSLA+ ++G VWAWG N + Q+G G+   R   
Sbjct: 519 GTNTDRLQPVQVAGL-SGVVAVAAGDSHSLALRSDGTVWAWGYNFDGQIGDGSYSWRFL- 576

Query: 108 NDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVE 167
                V+ +    V +  A G  S A+  DG++W WG +  GQLG G        P +V 
Sbjct: 577 ----PVQVVGLSGVVSVSAGGYHSLALRSDGTVWTWGYNGSGQLGDGSTAINKPAPVQVA 632

Query: 168 ALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESD 227
            L+G  +V +  G  H+L    DG ++ WG++ DG++G+           S ++RS+   
Sbjct: 633 GLSG--VVSLGSGNYHSLGLRSDGTVWAWGFNFDGQLGD----------GSLLNRST--- 677

Query: 228 QEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVE-VVDIACGFDHSLVLGRNGVLL 286
                                         P  V G+  VV +  G  HSL    +G + 
Sbjct: 678 ------------------------------PVRVSGLSGVVSVVAGDYHSLARRSDGTVW 707

Query: 287 SCGSNVYGQLGREKQDMGMFPV 308
           + G N  GQLG   ++  + PV
Sbjct: 708 AWGYNGEGQLGDGTRNDTLVPV 729


>gi|355749434|gb|EHH53833.1| Putative E3 ubiquitin-protein ligase HERC6 [Macaca fascicularis]
          Length = 1020

 Score =  104 bits (259), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 84/270 (31%), Positives = 130/270 (48%), Gaps = 45/270 (16%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPS-DVTSVSAGHYHSLAVTNNGAVWA 87
           V+S GD S+G LG         G+  EP  +  L + +V  VS G  HSLAV + G V+A
Sbjct: 44  VLSCGDNSRGQLG---RRRAPRGELPEP--IQALETLNVDLVSCGKEHSLAVCHKGRVFA 98

Query: 88  WGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSK 147
           WG  +E QLG G  E +     PK++  L+ + +         S A+  D  ++ WGK+ 
Sbjct: 99  WGAGSEGQLGIG--EFKEISFTPKKITTLNGIKIIQVSCGHYHSLALSKDSQVFSWGKNS 156

Query: 148 RGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNL 207
            GQLGLGK++     P RV +L G  + +V+ G  H+ A +  G  FGWG ++ G++   
Sbjct: 157 HGQLGLGKEVPSQASPQRVRSLEGIPLAQVAAGGAHSFALSLCGTSFGWGSNSAGQLALS 216

Query: 208 GKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVV 267
           G+ +   P+ SN                    K +S G               ++ + V+
Sbjct: 217 GRNV---PVQSN--------------------KPLSIGA--------------LKNLGVI 239

Query: 268 DIACGFDHSLVLGRNGVLLSCGSNVYGQLG 297
            I+CG +H+ VL ++G + + G N  GQLG
Sbjct: 240 YISCGDEHTAVLIQDGKVFTFGDNSSGQLG 269



 Score = 88.2 bits (217), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 90/318 (28%), Positives = 142/318 (44%), Gaps = 54/318 (16%)

Query: 58  RVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWND-PKRVEGL 116
           R PG  +++   ++G  HSL +  N  V + G N+  QLGR     RA   + P+ ++ L
Sbjct: 19  RSPG--AELLQAASGERHSLLLLTNHRVLSCGDNSRGQLGR----RRAPRGELPEPIQAL 72

Query: 117 DQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVK 176
           + +NV         S A+   G ++ WG    GQLG+G+    +  P ++  L G KI++
Sbjct: 73  ETLNVDLVSCGKEHSLAVCHKGRVFAWGAGSEGQLGIGEFKEISFTPKKITTLNGIKIIQ 132

Query: 177 VSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIE 236
           VS G  H+LA ++D ++F WG ++ G++G LGK +           S  S Q + S    
Sbjct: 133 VSCGHYHSLALSKDSQVFSWGKNSHGQLG-LGKEVP----------SQASPQRVRS---- 177

Query: 237 KAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQL 296
                                   +EG+ +  +A G  HS  L   G     GSN  GQL
Sbjct: 178 ------------------------LEGIPLAQVAAGGAHSFALSLCGTSFGWGSNSAGQL 213

Query: 297 GREKQDMGMFPVDINFHPVSISS--GLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLG 354
               +++   PV  N  P+SI +   LG     C    + V      + ++G N S QLG
Sbjct: 214 ALSGRNV---PVQSN-KPLSIGALKNLGVIYISCGDEHTAVLIQDGKVFTFGDNSSGQLG 269

Query: 355 RM-GPDNV-PLVVEGLEG 370
               P+   P +VE ++G
Sbjct: 270 YSPTPEKRGPQLVERIDG 287



 Score = 45.8 bits (107), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 47/179 (26%), Positives = 75/179 (41%), Gaps = 12/179 (6%)

Query: 24  ASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRV---PGLPSDVTSVSAGHYHSLAVT 80
           +  + V S+G  S G LGL   +         P RV    G+P  +  V+AG  HS A++
Sbjct: 144 SKDSQVFSWGKNSHGQLGLGKEVPSQAS----PQRVRSLEGIP--LAQVAAGGAHSFALS 197

Query: 81  NNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSL 140
             G  + WG N+  QL           N P  +  L  + V         ++ +  DG +
Sbjct: 198 LCGTSFGWGSNSAGQLALSGRNVPVQSNKPLSIGALKNLGVIYISCGDEHTAVLIQDGKV 257

Query: 141 WVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTE-DGKLFGWGY 198
           + +G +  GQLG      E   P  VE + G  + ++  G  H LA     G++  +G+
Sbjct: 258 FTFGDNSSGQLGYSP-TPEKRGPQLVERIDG-LVSQIDCGSYHTLAYVHTTGQVISFGH 314


>gi|387540886|gb|AFJ71070.1| putative E3 ubiquitin-protein ligase HERC6 isoform 1 [Macaca
           mulatta]
          Length = 1020

 Score =  104 bits (259), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 84/270 (31%), Positives = 130/270 (48%), Gaps = 45/270 (16%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPS-DVTSVSAGHYHSLAVTNNGAVWA 87
           V+S GD S+G LG         G+  EP  +  L + +V  VS G  HSLAV + G V+A
Sbjct: 44  VLSCGDNSRGQLG---RRRAPRGELPEP--IQALETLNVDLVSCGKEHSLAVCHKGRVFA 98

Query: 88  WGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSK 147
           WG  +E QLG G  E +     PK++  L+ + +         S A+  D  ++ WGK+ 
Sbjct: 99  WGAGSEGQLGIG--EFKEISFTPKKITTLNGIKIIQVSCGHYHSLALSKDSQVFSWGKNS 156

Query: 148 RGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNL 207
            GQLGLGK++     P RV +L G  + +V+ G  H+ A +  G  FGWG ++ G++   
Sbjct: 157 HGQLGLGKEVPSQASPQRVRSLEGIPLAQVAAGGAHSFALSLCGTSFGWGSNSAGQLALS 216

Query: 208 GKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVV 267
           G+ +   P+ SN                    K +S G               ++ + V+
Sbjct: 217 GRNV---PVQSN--------------------KPLSIGA--------------LKNLGVI 239

Query: 268 DIACGFDHSLVLGRNGVLLSCGSNVYGQLG 297
            I+CG +H+ VL ++G + + G N  GQLG
Sbjct: 240 YISCGDEHTAVLIQDGKVFTFGDNSSGQLG 269



 Score = 87.8 bits (216), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 90/318 (28%), Positives = 142/318 (44%), Gaps = 54/318 (16%)

Query: 58  RVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWND-PKRVEGL 116
           R PG  +++   ++G  HSL +  N  V + G N+  QLGR     RA   + P+ ++ L
Sbjct: 19  RSPG--AELLQAASGERHSLLLLTNHRVLSCGDNSRGQLGR----RRAPRGELPEPIQAL 72

Query: 117 DQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVK 176
           + +NV         S A+   G ++ WG    GQLG+G+    +  P ++  L G KI++
Sbjct: 73  ETLNVDLVSCGKEHSLAVCHKGRVFAWGAGSEGQLGIGEFKEISFTPKKITTLNGIKIIQ 132

Query: 177 VSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIE 236
           VS G  H+LA ++D ++F WG ++ G++G LGK +           S  S Q + S    
Sbjct: 133 VSCGHYHSLALSKDSQVFSWGKNSHGQLG-LGKEVP----------SQASPQRVRS---- 177

Query: 237 KAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQL 296
                                   +EG+ +  +A G  HS  L   G     GSN  GQL
Sbjct: 178 ------------------------LEGIPLAQVAAGGAHSFALSLCGTSFGWGSNSAGQL 213

Query: 297 GREKQDMGMFPVDINFHPVSISS--GLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLG 354
               +++   PV  N  P+SI +   LG     C    + V      + ++G N S QLG
Sbjct: 214 ALSGRNV---PVQSN-KPLSIGALKNLGVIYISCGDEHTAVLIQDGKVFTFGDNSSGQLG 269

Query: 355 RM-GPDNV-PLVVEGLEG 370
               P+   P +VE ++G
Sbjct: 270 YSPTPEKRGPQLVERIDG 287



 Score = 45.4 bits (106), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 47/179 (26%), Positives = 75/179 (41%), Gaps = 12/179 (6%)

Query: 24  ASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRV---PGLPSDVTSVSAGHYHSLAVT 80
           +  + V S+G  S G LGL   +         P RV    G+P  +  V+AG  HS A++
Sbjct: 144 SKDSQVFSWGKNSHGQLGLGKEVPSQAS----PQRVRSLEGIP--LAQVAAGGAHSFALS 197

Query: 81  NNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSL 140
             G  + WG N+  QL           N P  +  L  + V         ++ +  DG +
Sbjct: 198 LCGTSFGWGSNSAGQLALSGRNVPVQSNKPLSIGALKNLGVIYISCGDEHTAVLIQDGKV 257

Query: 141 WVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTE-DGKLFGWGY 198
           + +G +  GQLG      E   P  VE + G  + ++  G  H LA     G++  +G+
Sbjct: 258 FTFGDNSSGQLGYSP-TPEKRGPQLVERIDG-LVSQIDCGSYHTLAYVHTTGQVISFGH 314


>gi|41053397|ref|NP_956285.1| RCC1 and BTB domain-containing protein 1 [Danio rerio]
 gi|28278439|gb|AAH45877.1| Regulator of chromosome condensation (RCC1) and BTB (POZ) domain
           containing protein 1 [Danio rerio]
 gi|182890896|gb|AAI65711.1| Rcbtb1 protein [Danio rerio]
          Length = 531

 Score =  104 bits (259), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 64/179 (35%), Positives = 102/179 (56%), Gaps = 5/179 (2%)

Query: 66  VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAF 125
           VT VS G +HSLA+T+ G V+AWG NN  Q+G G+  ++ T   P++V    Q  V    
Sbjct: 130 VTEVSCGSHHSLALTHEGEVFAWGYNNCGQVGSGSTANQPT---PRKVSNCLQNKVIVNI 186

Query: 126 ASGVVSS-AIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHA 184
           A G  SS A+ D+G ++ WG +  GQLGLG +  + + P R+ AL G  +++++ G+ H+
Sbjct: 187 ACGQTSSMAVTDNGEVYGWGYNGNGQLGLGNNGNQ-LTPCRLIALQGFCVLQIASGYAHS 245

Query: 185 LAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVS 243
           LA T++G L+ WG +  G++G   K+ + SP+    ++    +     ST   A K  S
Sbjct: 246 LALTDEGLLYAWGANTYGQLGTGNKSNQLSPVQVMTEKERIVEIAACHSTHTSAAKTQS 304



 Score = 80.1 bits (196), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 67/252 (26%), Positives = 119/252 (47%), Gaps = 23/252 (9%)

Query: 76  SLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLD-QVNVCAAFASGVVSSAI 134
           ++ +T++  V+  G N    LG G  +S      PK+++ L  +  +  ++ SG     +
Sbjct: 34  AIYITHDDEVYVLGLNCSNCLGTGDSQSTIA---PKKLDCLSGKKLISLSYGSGPHVLLV 90

Query: 135 GDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEA-LAGEKIVKVSFGWGHALAQTEDGKL 193
            +DG L+ WG +   QLG G    + + P  V   L G+++ +VS G  H+LA T +G++
Sbjct: 91  TEDGELYAWGHNGYSQLGNGT-TNQGVSPILVSTNLQGKRVTEVSCGSHHSLALTHEGEV 149

Query: 194 FGWGYSADGRIGNLGKALESSP------LDSNIDRSSESDQEISSSTIEKAQKL------ 241
           F WGY+  G++G+   A + +P      L + +  +    Q  S +  +  +        
Sbjct: 150 FAWGYNNCGQVGSGSTANQPTPRKVSNCLQNKVIVNIACGQTSSMAVTDNGEVYGWGYNG 209

Query: 242 ---VSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGR 298
              +  G    +  P       ++G  V+ IA G+ HSL L   G+L + G+N YGQLG 
Sbjct: 210 NGQLGLGNNGNQLTPC--RLIALQGFCVLQIASGYAHSLALTDEGLLYAWGANTYGQLGT 267

Query: 299 EKQDMGMFPVDI 310
             +   + PV +
Sbjct: 268 GNKSNQLSPVQV 279



 Score = 62.0 bits (149), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 67/257 (26%), Positives = 105/257 (40%), Gaps = 57/257 (22%)

Query: 122 CAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGW 181
           C   AS   +  I  D  ++V G +    LG G D    I P +++ L+G+K++ +S+G 
Sbjct: 25  CIFGASANEAIYITHDDEVYVLGLNCSNCLGTG-DSQSTIAPKKLDCLSGKKLISLSYGS 83

Query: 182 G-HALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQK 240
           G H L  TEDG+L+ WG++   ++GN                                  
Sbjct: 84  GPHVLLVTEDGELYAWGHNGYSQLGN---------------------------------- 109

Query: 241 LVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREK 300
               G   +   PI+    L +G  V +++CG  HSL L   G + + G N  GQ+G   
Sbjct: 110 ----GTTNQGVSPILVSTNL-QGKRVTEVSCGSHHSLALTHEGEVFAWGYNNCGQVGSGS 164

Query: 301 QDMGMFPVDI-----NFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQ--L 353
                 P  +     N   V+I+ G   S+A+ +       G   G   WG+N + Q  L
Sbjct: 165 TANQPTPRKVSNCLQNKVIVNIACGQTSSMAVTD------NGEVYG---WGYNGNGQLGL 215

Query: 354 GRMGPDNVPLVVEGLEG 370
           G  G    P  +  L+G
Sbjct: 216 GNNGNQLTPCRLIALQG 232


>gi|384939244|gb|AFI33227.1| putative E3 ubiquitin-protein ligase HERC6 isoform 1 [Macaca
           mulatta]
          Length = 1020

 Score =  104 bits (259), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 84/270 (31%), Positives = 130/270 (48%), Gaps = 45/270 (16%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPS-DVTSVSAGHYHSLAVTNNGAVWA 87
           V+S GD S+G LG         G+  EP  +  L + +V  VS G  HSLAV + G V+A
Sbjct: 44  VLSCGDNSRGQLG---RRRAPRGELPEP--IQALETLNVDLVSCGKEHSLAVCHKGRVFA 98

Query: 88  WGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSK 147
           WG  +E QLG G  E +     PK++  L+ + +         S A+  D  ++ WGK+ 
Sbjct: 99  WGAGSEGQLGIG--EFKEISFTPKKITTLNGIKIIQVSCGHYHSLALSKDSQVFSWGKNS 156

Query: 148 RGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNL 207
            GQLGLGK++     P RV +L G  + +V+ G  H+ A +  G  FGWG ++ G++   
Sbjct: 157 HGQLGLGKEVPSQASPQRVRSLEGIPLAQVAAGGAHSFALSLCGTSFGWGSNSAGQLALS 216

Query: 208 GKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVV 267
           G+ +   P+ SN                    K +S G               ++ + V+
Sbjct: 217 GRNV---PVQSN--------------------KPLSIGA--------------LKNLGVI 239

Query: 268 DIACGFDHSLVLGRNGVLLSCGSNVYGQLG 297
            I+CG +H+ VL ++G + + G N  GQLG
Sbjct: 240 YISCGDEHTAVLIQDGKVFTFGDNSSGQLG 269



 Score = 87.8 bits (216), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 90/318 (28%), Positives = 142/318 (44%), Gaps = 54/318 (16%)

Query: 58  RVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWND-PKRVEGL 116
           R PG  +++   ++G  HSL +  N  V + G N+  QLGR     RA   + P+ ++ L
Sbjct: 19  RSPG--AELLQAASGERHSLLLLTNHRVLSCGDNSRGQLGR----RRAPRGELPEPIQAL 72

Query: 117 DQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVK 176
           + +NV         S A+   G ++ WG    GQLG+G+    +  P ++  L G KI++
Sbjct: 73  ETLNVDLVSCGKEHSLAVCHKGRVFAWGAGSEGQLGIGEFKEISFTPKKITTLNGIKIIQ 132

Query: 177 VSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIE 236
           VS G  H+LA ++D ++F WG ++ G++G LGK +           S  S Q + S    
Sbjct: 133 VSCGHYHSLALSKDSQVFSWGKNSHGQLG-LGKEVP----------SQASPQRVRS---- 177

Query: 237 KAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQL 296
                                   +EG+ +  +A G  HS  L   G     GSN  GQL
Sbjct: 178 ------------------------LEGIPLAQVAAGGAHSFALSLCGTSFGWGSNSAGQL 213

Query: 297 GREKQDMGMFPVDINFHPVSISS--GLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLG 354
               +++   PV  N  P+SI +   LG     C    + V      + ++G N S QLG
Sbjct: 214 ALSGRNV---PVQSN-KPLSIGALKNLGVIYISCGDEHTAVLIQDGKVFTFGDNSSGQLG 269

Query: 355 RM-GPDNV-PLVVEGLEG 370
               P+   P +VE ++G
Sbjct: 270 YSPTPEKRGPQLVERIDG 287



 Score = 45.4 bits (106), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 47/179 (26%), Positives = 75/179 (41%), Gaps = 12/179 (6%)

Query: 24  ASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRV---PGLPSDVTSVSAGHYHSLAVT 80
           +  + V S+G  S G LGL   +         P RV    G+P  +  V+AG  HS A++
Sbjct: 144 SKDSQVFSWGKNSHGQLGLGKEVPSQAS----PQRVRSLEGIP--LAQVAAGGAHSFALS 197

Query: 81  NNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSL 140
             G  + WG N+  QL           N P  +  L  + V         ++ +  DG +
Sbjct: 198 LCGTSFGWGSNSAGQLALSGRNVPVQSNKPLSIGALKNLGVIYISCGDEHTAVLIQDGKV 257

Query: 141 WVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTE-DGKLFGWGY 198
           + +G +  GQLG      E   P  VE + G  + ++  G  H LA     G++  +G+
Sbjct: 258 FTFGDNSSGQLGYSP-TPEKRGPQLVERIDG-LVSQIDCGSYHTLAYVHTTGQVISFGH 314


>gi|355569557|gb|EHH25458.1| Putative E3 ubiquitin-protein ligase HERC6 [Macaca mulatta]
          Length = 1020

 Score =  104 bits (259), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 84/270 (31%), Positives = 130/270 (48%), Gaps = 45/270 (16%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPS-DVTSVSAGHYHSLAVTNNGAVWA 87
           V+S GD S+G LG         G+  EP  +  L + +V  VS G  HSLAV + G V+A
Sbjct: 44  VLSCGDNSRGQLG---RRRAPRGELPEP--IQALETLNVDLVSCGKEHSLAVCHKGRVFA 98

Query: 88  WGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSK 147
           WG  +E QLG G  E +     PK++  L+ + +         S A+  D  ++ WGK+ 
Sbjct: 99  WGAGSEGQLGIG--EFKEISFTPKKITTLNGIKIIQVSCGHYHSLALSKDSQVFSWGKNS 156

Query: 148 RGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNL 207
            GQLGLGK++     P RV +L G  + +V+ G  H+ A +  G  FGWG ++ G++   
Sbjct: 157 HGQLGLGKEVPSQASPQRVRSLEGIPLAQVAAGGAHSFALSLCGTSFGWGSNSAGQLALS 216

Query: 208 GKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVV 267
           G+ +   P+ SN                    K +S G               ++ + V+
Sbjct: 217 GRNV---PVQSN--------------------KPLSIGA--------------LKNLGVI 239

Query: 268 DIACGFDHSLVLGRNGVLLSCGSNVYGQLG 297
            I+CG +H+ VL ++G + + G N  GQLG
Sbjct: 240 YISCGDEHTAVLIQDGKVFTFGDNSSGQLG 269



 Score = 87.8 bits (216), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 90/318 (28%), Positives = 142/318 (44%), Gaps = 54/318 (16%)

Query: 58  RVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWND-PKRVEGL 116
           R PG  +++   ++G  HSL +  N  V + G N+  QLGR     RA   + P+ ++ L
Sbjct: 19  RSPG--AELLQAASGERHSLLLLTNHRVLSCGDNSRGQLGR----RRAPRGELPEPIQAL 72

Query: 117 DQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVK 176
           + +NV         S A+   G ++ WG    GQLG+G+    +  P ++  L G KI++
Sbjct: 73  ETLNVDLVSCGKEHSLAVCHKGRVFAWGAGSEGQLGIGEFKEISFTPKKITTLNGIKIIQ 132

Query: 177 VSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIE 236
           VS G  H+LA ++D ++F WG ++ G++G LGK +           S  S Q + S    
Sbjct: 133 VSCGHYHSLALSKDSQVFSWGKNSHGQLG-LGKEVP----------SQASPQRVRS---- 177

Query: 237 KAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQL 296
                                   +EG+ +  +A G  HS  L   G     GSN  GQL
Sbjct: 178 ------------------------LEGIPLAQVAAGGAHSFALSLCGTSFGWGSNSAGQL 213

Query: 297 GREKQDMGMFPVDINFHPVSISS--GLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLG 354
               +++   PV  N  P+SI +   LG     C    + V      + ++G N S QLG
Sbjct: 214 ALSGRNV---PVQSN-KPLSIGALKNLGVIYISCGDEHTAVLIQDGKVFTFGDNSSGQLG 269

Query: 355 RM-GPDNV-PLVVEGLEG 370
               P+   P +VE ++G
Sbjct: 270 YSPTPEKRGPQLVERIDG 287



 Score = 45.4 bits (106), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 47/179 (26%), Positives = 75/179 (41%), Gaps = 12/179 (6%)

Query: 24  ASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRV---PGLPSDVTSVSAGHYHSLAVT 80
           +  + V S+G  S G LGL   +         P RV    G+P  +  V+AG  HS A++
Sbjct: 144 SKDSQVFSWGKNSHGQLGLGKEVPSQAS----PQRVRSLEGIP--LAQVAAGGAHSFALS 197

Query: 81  NNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSL 140
             G  + WG N+  QL           N P  +  L  + V         ++ +  DG +
Sbjct: 198 LCGTSFGWGSNSAGQLALSGRNVPVQSNKPLSIGALKNLGVIYISCGDEHTAVLIQDGKV 257

Query: 141 WVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTE-DGKLFGWGY 198
           + +G +  GQLG      E   P  VE + G  + ++  G  H LA     G++  +G+
Sbjct: 258 FTFGDNSSGQLGYSP-TPEKRGPQLVERIDG-LVSQIDCGSYHTLAYVHTTGQVISFGH 314


>gi|159040146|ref|YP_001539399.1| regulator of chromosome condensation, RCC1 [Salinispora arenicola
           CNS-205]
 gi|157918981|gb|ABW00409.1| regulator of chromosome condensation, RCC1 [Salinispora arenicola
           CNS-205]
          Length = 555

 Score =  104 bits (259), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 102/348 (29%), Positives = 158/348 (45%), Gaps = 44/348 (12%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLP--SDVTSVSAGHYHSLAVTNNGAVW 86
           V+++G+   G LG  T++     D+  P  V  LP  + +T+++    +S A+T+ GAV 
Sbjct: 56  VLTWGENDFGQLGDGTTI-----DSSTPVDV-DLPAGTTITAIAGSDANSFALTSTGAVL 109

Query: 87  AWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSS-AIGDDGSLWVWGK 145
           AWG N   +LG G    R T   P  V+ L       A A G   + A+   G+L  WG 
Sbjct: 110 AWGNNTGGELGDGTNTDRTT---PVAVK-LPTGTTVTAIAVGTFHTLALTSTGALLAWGG 165

Query: 146 SKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIG 205
           +  G+LG G   T    P  V   AG  I  ++ G GH+LA T  G +  WG + +G++G
Sbjct: 166 NGFGELGDGT-TTARNEPVPVNVPAGTTITAIAGGRGHSLALTSTGTVLAWGKNNEGQLG 224

Query: 206 NLGKALESSPLDSNIDR----------SSESDQEISSSTI----EKAQKLVSEGMEKEKY 251
           +   A  ++P+D ++             S S    S+ T+      +   V +G   ++ 
Sbjct: 225 DGTNANSTTPVDVDLPPGTTVTAIAGGGSNSFALTSAGTVLAWGLNSSGQVGDGTTTDRS 284

Query: 252 MPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDIN 311
            P+  +  L  G  V  IA G  HS+ L   G +L+ G N  GQLG         PVD+N
Sbjct: 285 TPVDVD--LPPGTTVTAIAGGEGHSVALTSAGTVLAWGLNSSGQLGDGTTTDSTTPVDVN 342

Query: 312 FHPVSISSGL-----GHSLAICEVRSSNVTGGARGIVSWGWNRSSQLG 354
             P +  + +      HSLA+    +         I++WG N S +LG
Sbjct: 343 LPPDTTITAITAHDGSHSLALTSTGT---------ILAWGLNSSGELG 381



 Score = 95.5 bits (236), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 89/329 (27%), Positives = 135/329 (41%), Gaps = 59/329 (17%)

Query: 11  HVNVLTSRIFMRSASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVS 70
           H   LTS   + +  G      GDG+  A   P            P  VP   + +T+++
Sbjct: 150 HTLALTSTGALLAWGGNGFGELGDGTTTARNEPV-----------PVNVPAG-TTITAIA 197

Query: 71  AGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVV 130
            G  HSLA+T+ G V AWG+NNE QLG G   + A    P  V+      V A    G  
Sbjct: 198 GGRGHSLALTSTGTVLAWGKNNEGQLGDG---TNANSTTPVDVDLPPGTTVTAIAGGGSN 254

Query: 131 SSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTED 190
           S A+   G++  WG +  GQ+G G   T+   P  V+   G  +  ++ G GH++A T  
Sbjct: 255 SFALTSAGTVLAWGLNSSGQVGDGT-TTDRSTPVDVDLPPGTTVTAIAGGEGHSVALTSA 313

Query: 191 GKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEK 250
           G +  WG ++ G++G+      ++P+D N+      D  I++ T                
Sbjct: 314 GTVLAWGLNSSGQLGDGTTTDSTTPVDVNL----PPDTTITAITAHDGS----------- 358

Query: 251 YMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDI 310
                                   HSL L   G +L+ G N  G+LG         PVD+
Sbjct: 359 ------------------------HSLALTSTGTILAWGLNSSGELGDGTTTNRSTPVDV 394

Query: 311 NFHP----VSISSGLGHSLAICEVRSSNV 335
           N  P     +I +G  HS+A+    +S  
Sbjct: 395 NLPPGTTVTAIDNGDDHSMALTAPPTSTT 423



 Score = 83.6 bits (205), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 79/302 (26%), Positives = 125/302 (41%), Gaps = 33/302 (10%)

Query: 70  SAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGV 129
           +A H  S +   +  V  WG N+  QLG G     +T   P  V+      + A   S  
Sbjct: 41  AAQHAPSPSGVASDTVLTWGENDFGQLGDGTTIDSST---PVDVDLPAGTTITAIAGSDA 97

Query: 130 VSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTE 189
            S A+   G++  WG +  G+LG G + T+   P  V+   G  +  ++ G  H LA T 
Sbjct: 98  NSFALTSTGAVLAWGNNTGGELGDGTN-TDRTTPVAVKLPTGTTVTAIAVGTFHTLALTS 156

Query: 190 DGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSS----------ESDQEISSSTI---- 235
            G L  WG +  G +G+      + P+  N+   +           S    S+ T+    
Sbjct: 157 TGALLAWGGNGFGELGDGTTTARNEPVPVNVPAGTTITAIAGGRGHSLALTSTGTVLAWG 216

Query: 236 EKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQ 295
           +  +  + +G       P+  +  L  G  V  IA G  +S  L   G +L+ G N  GQ
Sbjct: 217 KNNEGQLGDGTNANSTTPVDVD--LPPGTTVTAIAGGGSNSFALTSAGTVLAWGLNSSGQ 274

Query: 296 LGREKQDMGMFPVDINFHP----VSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSS 351
           +G         PVD++  P     +I+ G GHS+A+           A  +++WG N S 
Sbjct: 275 VGDGTTTDRSTPVDVDLPPGTTVTAIAGGEGHSVALTS---------AGTVLAWGLNSSG 325

Query: 352 QL 353
           QL
Sbjct: 326 QL 327


>gi|91201899|emb|CAJ74959.1| similar to chromosomal condensation regulatory protein [Candidatus
           Kuenenia stuttgartiensis]
          Length = 620

 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 94/306 (30%), Positives = 146/306 (47%), Gaps = 36/306 (11%)

Query: 66  VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAF 125
           +T+V  G  HS+A+ + G VWAWG N + +LG G  E+ +    P  V  L   ++ A  
Sbjct: 209 ITAVDCGGDHSMALDSLGRVWAWGYNGDGELGGGTTENNSNVPVPVPVPNL--TDIIAIS 266

Query: 126 ASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHAL 185
           A G  S A+  DGS+  WG +  GQLG G +  +  VP+++ +L   K   +S G  H+L
Sbjct: 267 AGGEYSIALSSDGSVLTWGANSDGQLGNG-NTDQNSVPTKISSLPLMK--GISAGEAHSL 323

Query: 186 AQTEDGKLFGWGYSADGRIGNLGKALESSPLDS-NIDRSSESDQEISSSTIEKA------ 238
           A TEDG ++ WG + +G+IGN  K+ ++  L+   +   ++ D   + +T   A      
Sbjct: 324 AVTEDGFVYAWGLNDEGQIGNGEKSADNPVLNPVQVQGLTDIDAVCAGATFSLALGIDGR 383

Query: 239 --------QKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGS 290
                   +  + +G       P+     +    ++  +ACG DHSL + RNG + S G 
Sbjct: 384 VWAWGLNDEGQLGDGTNTNSTTPV----EVTNLAKISAVACGSDHSLAI-RNGKVKSWGL 438

Query: 291 NVYGQLGREKQDMGMFPVDIN--FHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWN 348
           N  GQLG         P+D+      V +++G  HSLAI    +         I  WG N
Sbjct: 439 NDEGQLGDGSTRSSSAPLDVTGLSDIVYVAAGESHSLAITSKGN---------IYVWGLN 489

Query: 349 RSSQLG 354
              QLG
Sbjct: 490 GDGQLG 495



 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 101/334 (30%), Positives = 148/334 (44%), Gaps = 32/334 (9%)

Query: 51  GDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDP 110
           G   +P   PG+      +S G  HSLA+ + G +WAWG N + QLG G  +S+ T   P
Sbjct: 144 GTQPQPAPTPGV--VTPQISGGWSHSLALDSEGKLWAWGLNEDGQLGDGTNDSQTT---P 198

Query: 111 KRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALA 170
             V+      + A    G  S A+   G +W WG +  G+LG G     + VP  V    
Sbjct: 199 VAVQINALTTITAVDCGGDHSMALDSLGRVWAWGYNGDGELGGGTTENNSNVPVPVPVPN 258

Query: 171 GEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGN-------LGKALESSPLDSNIDRS 223
              I+ +S G  +++A + DG +  WG ++DG++GN       +   + S PL   I   
Sbjct: 259 LTDIIAISAGGEYSIALSSDGSVLTWGANSDGQLGNGNTDQNSVPTKISSLPLMKGISAG 318

Query: 224 SESDQEISSSTIEKAQKLVSEGM----EKEKYMPIIWEPFLVEGVEVVDIAC-GFDHSLV 278
                 ++      A  L  EG     EK    P++  P  V+G+  +D  C G   SL 
Sbjct: 319 EAHSLAVTEDGFVYAWGLNDEGQIGNGEKSADNPVL-NPVQVQGLTDIDAVCAGATFSLA 377

Query: 279 LGRNGVLLSCGSNVYGQLGREKQDMGMFPVDI-NFHPVS-ISSGLGHSLAICEVRSSNVT 336
           LG +G + + G N  GQLG         PV++ N   +S ++ G  HSLAI   +     
Sbjct: 378 LGIDGRVWAWGLNDEGQLGDGTNTNSTTPVEVTNLAKISAVACGSDHSLAIRNGK----- 432

Query: 337 GGARGIVSWGWNRSSQL--GRMGPDNVPLVVEGL 368
                + SWG N   QL  G     + PL V GL
Sbjct: 433 -----VKSWGLNDEGQLGDGSTRSSSAPLDVTGL 461



 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 88/287 (30%), Positives = 130/287 (45%), Gaps = 56/287 (19%)

Query: 28  AVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWA 87
           +V+++G  S G LG      G       PT++  LP  +  +SAG  HSLAVT +G V+A
Sbjct: 280 SVLTWGANSDGQLG-----NGNTDQNSVPTKISSLPL-MKGISAGEAHSLAVTEDGFVYA 333

Query: 88  WGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSK 147
           WG N+E Q+G G   +     +P +V+GL  ++   A A+   S A+G DG +W WG + 
Sbjct: 334 WGLNDEGQIGNGEKSADNPVLNPVQVQGLTDIDAVCAGAT--FSLALGIDGRVWAWGLND 391

Query: 148 RGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNL 207
            GQLG G + T +  P  V  LA  KI  V+ G  H+LA   +GK+  WG + +G++G+ 
Sbjct: 392 EGQLGDGTN-TNSTTPVEVTNLA--KISAVACGSDHSLA-IRNGKVKSWGLNDEGQLGDG 447

Query: 208 GKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGV-EV 266
                S+PLD                                           V G+ ++
Sbjct: 448 STRSSSAPLD-------------------------------------------VTGLSDI 464

Query: 267 VDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFH 313
           V +A G  HSL +   G +   G N  GQLG         P  I+ +
Sbjct: 465 VYVAAGESHSLAITSKGNIYVWGLNGDGQLGDGTNRSSRTPKTIDLN 511


>gi|348563524|ref|XP_003467557.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC6-like [Cavia
           porcellus]
          Length = 1016

 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 79/275 (28%), Positives = 126/275 (45%), Gaps = 45/275 (16%)

Query: 25  SGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTR-VPGLPSDVTSVSAGHYHSLAVTNNG 83
           +   V + GD S G LG         G   EP + +  LP D+  VS G  HSLAV + G
Sbjct: 46  TNQVVHACGDNSGGQLG---RRGAPSGKQPEPIQALVNLPVDL--VSCGKEHSLAVCHKG 100

Query: 84  AVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVW 143
            V+AWG  ++ QLG G  E       P++++ L  + +         S A+  DG ++ W
Sbjct: 101 KVFAWGVGSDGQLGTGKFEEICFI--PQKIKALTGIKIIQISCGYYHSLALSKDGQVFSW 158

Query: 144 GKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGR 203
           GK+  GQLGLG++      P RV +L G  + +V+ G  H+ A +  G  FGWG ++ G+
Sbjct: 159 GKNSHGQLGLGQEFPSQASPQRVRSLEGIPLAQVAAGGAHSFALSLSGTSFGWGNNSAGQ 218

Query: 204 IGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEG 263
           +   G         +N+   S   + + +                            ++ 
Sbjct: 219 LAFSG---------NNVLVQSYKPRSVGA----------------------------LKN 241

Query: 264 VEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGR 298
           + VV I+CG++H+ VL +N  + + G N +GQLG 
Sbjct: 242 LGVVYISCGYEHTAVLTQNDQVFTFGDNSFGQLGH 276



 Score = 55.1 bits (131), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 54/204 (26%), Positives = 87/204 (42%), Gaps = 61/204 (29%)

Query: 163 PSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDR 222
           P  ++AL    +  VS G  H+LA    GK+F WG  +DG++G  GK  E   +      
Sbjct: 72  PEPIQALVNLPVDLVSCGKEHSLAVCHKGKVFAWGVGSDGQLGT-GKFEEICFIP----- 125

Query: 223 SSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRN 282
                Q+I + T                            G++++ I+CG+ HSL L ++
Sbjct: 126 -----QKIKALT----------------------------GIKIIQISCGYYHSLALSKD 152

Query: 283 GVLLSCGSNVYGQLGREKQDMGMFPVDINFHPV---------SISSGLGHSLAICEVRSS 333
           G + S G N +GQLG  ++    FP   +   V          +++G  HS A+      
Sbjct: 153 GQVFSWGKNSHGQLGLGQE----FPSQASPQRVRSLEGIPLAQVAAGGAHSFAL------ 202

Query: 334 NVTGGARGIVSWGWNRSSQLGRMG 357
           +++G + G   WG N + QL   G
Sbjct: 203 SLSGTSFG---WGNNSAGQLAFSG 223



 Score = 37.7 bits (86), Expect = 7.9,   Method: Compositional matrix adjust.
 Identities = 35/98 (35%), Positives = 50/98 (51%), Gaps = 7/98 (7%)

Query: 20  FMRSASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPS-DVTSVSAGHYHSLA 78
           F  S SGT   SFG G+  A  L  S   V   +Y+P  V  L +  V  +S G+ H+  
Sbjct: 200 FALSLSGT---SFGWGNNSAGQLAFSGNNVLVQSYKPRSVGALKNLGVVYISCGYEHTAV 256

Query: 79  VTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGL 116
           +T N  V+ +G N+  QLG   + S+ T   P+ VEG+
Sbjct: 257 LTQNDQVFTFGDNSFGQLGHNGV-SQTT--GPQLVEGI 291


>gi|291408944|ref|XP_002720770.1| PREDICTED: regulator of chromosome condensation and BTB domain
           containing protein 2 [Oryctolagus cuniculus]
          Length = 551

 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 62/176 (35%), Positives = 97/176 (55%), Gaps = 5/176 (2%)

Query: 66  VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAF 125
           V  V+ G YHSL +T++G V+AWG NN  Q+G G   ++     P+RV G  Q  V    
Sbjct: 154 VIEVACGSYHSLVLTSDGEVFAWGYNNSGQVGSGPTANQPI---PRRVTGCLQNKVVVNI 210

Query: 126 ASG-VVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHA 184
           A G + S A+ D G ++VWG +  GQLGLG    +   P RV AL G ++ +V+ G+ H 
Sbjct: 211 ACGQMCSMAVVDTGEVYVWGYNGNGQLGLGSGGNQP-TPCRVAALQGIRVQRVACGYAHT 269

Query: 185 LAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQK 240
           L  T++G+++ WG ++ G++G   K+ +S P    +++    +     ST   A K
Sbjct: 270 LVLTDEGQVYAWGANSYGQLGTGNKSNQSYPTPVVVEKDRIIEIAACHSTHTSAAK 325



 Score = 83.6 bits (205), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 72/289 (24%), Positives = 128/289 (44%), Gaps = 25/289 (8%)

Query: 77  LAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNV-CAAFASGVVSSAIG 135
           L  T N  ++  G N    LG G  +S     +P+R++ L    + C ++ SG       
Sbjct: 59  LYSTVNDEIFVLGTNCSGCLGLGDAQSTI---EPRRLDSLSGKKIACLSYGSGPHVVLAT 115

Query: 136 DDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEA-LAGEKIVKVSFGWGHALAQTEDGKLF 194
            +G ++ WG +   QLG G      +VP ++   L+ +++++V+ G  H+L  T DG++F
Sbjct: 116 TEGEVFTWGHNAYSQLGNGT-TNHGLVPCQISTNLSNKQVIEVACGSYHSLVLTSDGEVF 174

Query: 195 GWGYSADGRIGNLGKALESSP------LDSNIDRSSESDQEISSSTIEKAQKLV------ 242
            WGY+  G++G+   A +  P      L + +  +    Q  S + ++  +  V      
Sbjct: 175 AWGYNNSGQVGSGPTANQPIPRRVTGCLQNKVVVNIACGQMCSMAVVDTGEVYVWGYNGN 234

Query: 243 -SEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQ 301
              G+      P       ++G+ V  +ACG+ H+LVL   G + + G+N YGQLG   +
Sbjct: 235 GQLGLGSGGNQPTPCRVAALQGIRVQRVACGYAHTLVLTDEGQVYAWGANSYGQLGTGNK 294

Query: 302 DMGMFPVDINFHPVSISSGLGHSLAICEVRSSNVTGGARG-IVSWGWNR 349
               +P      PV +       +A C    ++      G +  WG  R
Sbjct: 295 SNQSYPT-----PVVVEKDRIIEIAACHSTHTSAAKTQGGHVYMWGQCR 338



 Score = 62.8 bits (151), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 67/252 (26%), Positives = 109/252 (43%), Gaps = 63/252 (25%)

Query: 129 VVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWG-HALAQ 187
           V+ S + D+  ++V G +  G LGLG D    I P R+++L+G+KI  +S+G G H +  
Sbjct: 58  VLYSTVNDE--IFVLGTNCSGCLGLG-DAQSTIEPRRLDSLSGKKIACLSYGSGPHVVLA 114

Query: 188 TEDGKLFGWGYSADGRIGN--LGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEG 245
           T +G++F WG++A  ++GN      L    + +N+                         
Sbjct: 115 TTEGEVFTWGHNAYSQLGNGTTNHGLVPCQISTNLSNK---------------------- 152

Query: 246 MEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGM 305
                              +V+++ACG  HSLVL  +G + + G N  GQ+G        
Sbjct: 153 -------------------QVIEVACGSYHSLVLTSDGEVFAWGYNNSGQVGSGPTANQP 193

Query: 306 FPVDI-----NFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQ--LGRMGP 358
            P  +     N   V+I+ G   S+A+ +      TG    +  WG+N + Q  LG  G 
Sbjct: 194 IPRRVTGCLQNKVVVNIACGQMCSMAVVD------TGE---VYVWGYNGNGQLGLGSGGN 244

Query: 359 DNVPLVVEGLEG 370
              P  V  L+G
Sbjct: 245 QPTPCRVAALQG 256


>gi|374582676|ref|ZP_09655770.1| RCC1 domain-containing protein, alpha-tubulin suppressor
           [Desulfosporosinus youngiae DSM 17734]
 gi|374418758|gb|EHQ91193.1| RCC1 domain-containing protein, alpha-tubulin suppressor
           [Desulfosporosinus youngiae DSM 17734]
          Length = 747

 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 107/364 (29%), Positives = 167/364 (45%), Gaps = 60/364 (16%)

Query: 42  LPTSLTGVGGDAYE---PTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGR 98
           LP S+      A+    P +  G  + +++VSAG +HSL ++++G VWAWG N+E QLG 
Sbjct: 23  LPASVVSYAKPAFAADAPVQTRG--ASLSTVSAGMFHSLTLSSDGTVWAWGDNSEGQLGN 80

Query: 99  GALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGK--- 155
              E     +    V+  D  NV A  A G  S A+ +DG++W WG ++ GQ G GK   
Sbjct: 81  NQSELP---DSSTPVQASDLTNVVAVAAGGAHSLALKNDGTVWGWGNNEFGQAGFGKIEL 137

Query: 156 -----------DITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRI 204
                         ++  P +V+ L    ++ ++ G  ++LA   DG ++ WG S +G++
Sbjct: 138 IAGGPDFYMPEQYLKSYTPLQVQGLT--DVIAIAAGMDYSLALKADGTIWSWGSSQNGQL 195

Query: 205 GNL-GKALESS-PLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLV- 261
           GN  GK L ++ P    +D + ++   I+  +   A  L      K+      W   LV 
Sbjct: 196 GNPSGKGLFTNIPAKVVVDTNGQALTGITKISAGSAFALA----LKDDGTVWTWGGLLVD 251

Query: 262 -EGV--------------EVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLG-REKQDMGM 305
            EGV              +V++I+ G++HSL L  +G +   G N   QLG R+ Q    
Sbjct: 252 EEGVHNVTSAAIQVHSLTDVINISAGYNHSLALKSDGTVWGWGKNDLFQLGDRDTQQSWN 311

Query: 306 FPVDINFHPVSISSGLGHSLAICEVRSSNVTGGARGIV-SWGWNRSSQLGRMGPDNVPLV 364
            P+ I        SG+ +  +I      ++     G V SWG N   QLG    D VP  
Sbjct: 312 TPLQI--------SGINNVHSIVAGSYLSLVLKTDGTVWSWGGNLWGQLG----DAVPFE 359

Query: 365 VEGL 368
            E L
Sbjct: 360 QEPL 363



 Score = 82.8 bits (203), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 47/146 (32%), Positives = 85/146 (58%), Gaps = 9/146 (6%)

Query: 64  SDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCA 123
           +DV ++SAG+ HSLA+ ++G VW WG+N+  QLG    +++ +WN P ++ G++  NV +
Sbjct: 269 TDVINISAGYNHSLALKSDGTVWGWGKNDLFQLGD--RDTQQSWNTPLQISGIN--NVHS 324

Query: 124 AFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITE---AIVPSRVEALAGEKIVKVSFG 180
             A   +S  +  DG++W WG +  GQLG      +   ++ P +V  L       ++ G
Sbjct: 325 IVAGSYLSLVLKTDGTVWSWGGNLWGQLGDAVPFEQEPLSMNPVQVNELTNA--TALASG 382

Query: 181 WGHALAQTEDGKLFGWGYSADGRIGN 206
            G  +A+   G ++ WG +++G++GN
Sbjct: 383 LGFVIARQSGGTIWAWGANSEGQLGN 408


>gi|344281808|ref|XP_003412669.1| PREDICTED: RCC1 and BTB domain-containing protein 2 [Loxodonta
           africana]
          Length = 551

 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 63/177 (35%), Positives = 96/177 (54%), Gaps = 5/177 (2%)

Query: 65  DVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAA 124
            V  V+ G YHSL +T++G V+AWG NN  Q+G G   S A    P+RV G  Q      
Sbjct: 153 QVIEVACGSYHSLVLTSDGEVFAWGYNNSGQVGSG---STANQPIPRRVTGCLQNKAVVN 209

Query: 125 FASG-VVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGH 183
            A G + S A+ D G ++VWG +  GQLGLG    +   P RV AL G  + +V+ G+ H
Sbjct: 210 IACGQMCSMAVVDAGEVYVWGYNGNGQLGLGSSGNQP-TPCRVAALQGIHVQRVACGYAH 268

Query: 184 ALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQK 240
            L  T++G+++ WG ++ G++G   K+ +S P   ++++    +     ST   A K
Sbjct: 269 TLVLTDEGQVYAWGANSYGQLGTGNKSNQSYPTPISVEKDRIIEIAACHSTHTSAAK 325



 Score = 85.5 bits (210), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 72/289 (24%), Positives = 128/289 (44%), Gaps = 25/289 (8%)

Query: 77  LAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNV-CAAFASGVVSSAIG 135
           L  T N  ++  G N    LG G ++S     +P+R++ L    + C ++ SG       
Sbjct: 59  LYTTVNNEIFVLGTNCCGCLGLGDVQSTI---EPRRLDSLSGKKIACLSYGSGPHIVLAT 115

Query: 136 DDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEA-LAGEKIVKVSFGWGHALAQTEDGKLF 194
            +G ++ WG +   QLG G      +VP  +   L+ +++++V+ G  H+L  T DG++F
Sbjct: 116 TEGEVFTWGHNAYSQLGNGT-TNHGLVPCYISTNLSNKQVIEVACGSYHSLVLTSDGEVF 174

Query: 195 GWGYSADGRIGNLGKALESSP------LDSNIDRSSESDQEISSSTIEKAQKLV------ 242
            WGY+  G++G+   A +  P      L +    +    Q  S + ++  +  V      
Sbjct: 175 AWGYNNSGQVGSGSTANQPIPRRVTGCLQNKAVVNIACGQMCSMAVVDAGEVYVWGYNGN 234

Query: 243 -SEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQ 301
              G+      P       ++G+ V  +ACG+ H+LVL   G + + G+N YGQLG   +
Sbjct: 235 GQLGLGSSGNQPTPCRVAALQGIHVQRVACGYAHTLVLTDEGQVYAWGANSYGQLGTGNK 294

Query: 302 DMGMFPVDINFHPVSISSGLGHSLAICEVRSSNVTGGARG-IVSWGWNR 349
               +P      P+S+       +A C    ++      G +  WG  R
Sbjct: 295 SNQSYPT-----PISVEKDRIIEIAACHSTHTSAAKTQGGNVYMWGQCR 338



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 64/242 (26%), Positives = 103/242 (42%), Gaps = 57/242 (23%)

Query: 137 DGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWG-HALAQTEDGKLFG 195
           +  ++V G +  G LGLG D+   I P R+++L+G+KI  +S+G G H +  T +G++F 
Sbjct: 64  NNEIFVLGTNCCGCLGLG-DVQSTIEPRRLDSLSGKKIACLSYGSGPHIVLATTEGEVFT 122

Query: 196 WGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPII 255
           WG++A  ++GN                                      G      +P  
Sbjct: 123 WGHNAYSQLGN--------------------------------------GTTNHGLVPCY 144

Query: 256 WEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDI----- 310
               L    +V+++ACG  HSLVL  +G + + G N  GQ+G         P  +     
Sbjct: 145 ISTNL-SNKQVIEVACGSYHSLVLTSDGEVFAWGYNNSGQVGSGSTANQPIPRRVTGCLQ 203

Query: 311 NFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQ--LGRMGPDNVPLVVEGL 368
           N   V+I+ G   S+A+ +         A  +  WG+N + Q  LG  G    P  V  L
Sbjct: 204 NKAVVNIACGQMCSMAVVD---------AGEVYVWGYNGNGQLGLGSSGNQPTPCRVAAL 254

Query: 369 EG 370
           +G
Sbjct: 255 QG 256


>gi|442319627|ref|YP_007359648.1| RCC1 repeat-containing protein [Myxococcus stipitatus DSM 14675]
 gi|441487269|gb|AGC43964.1| RCC1 repeat-containing protein [Myxococcus stipitatus DSM 14675]
          Length = 1096

 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 102/328 (31%), Positives = 155/328 (47%), Gaps = 33/328 (10%)

Query: 56  PTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEG 115
           P +V GL +D  +V AG  HS+ +  +G +WAWGRN E QL  G    R T   P RV+G
Sbjct: 592 PEQVQGL-TDAVAVRAGRCHSVVLRADGTLWAWGRNAEGQLADGTFTDRMT---PARVDG 647

Query: 116 LDQVNVCAAFASGVVSS-AIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKI 174
           L  V    +F+ G   + A+  DG+ W WG + +GQLG G  +     P++V  L    +
Sbjct: 648 LTGV---ISFSVGSEQTLALKADGTAWAWGPNAQGQLGGGLSVPR-TRPTQVPTL--TDV 701

Query: 175 VKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNI--DRSSESDQEIS- 231
             V+ G  HAL   +D  L+ WG +A+G++G+     +++P+ S +   R   +  + S 
Sbjct: 702 RTVAMGAVHALVLKDDLTLWAWGSNAEGQVGDGALDWQAAPVRSGLAASRGLAAATQYSL 761

Query: 232 ----SSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGV-EVVDIACGFDHSLVLGRNGVLL 286
                 +++      S  +      P   EP  V G+ E   IA G  H L L  +G +L
Sbjct: 762 GIALDGSVQSTGANASGQLGDGTLFPRA-EPVPVIGLSECRAIAGGATHGLALKTDGRVL 820

Query: 287 SCGSNVYGQLGREKQDMGMFPVDINFHP--VSISSGLGHSLAICEVRSSNVTGGARGIVS 344
           S G+N  G+LG         P  +      +SI+ G  HSLA+          G   + +
Sbjct: 821 SWGANAEGELGDGTTVARRAPAVVGPLAGVLSIAVGARHSLALL---------GDGSVQA 871

Query: 345 WGWNRSSQLGRMGPDN--VPLVVEGLEG 370
           WG N   QLG     +  +P+ V+GL G
Sbjct: 872 WGSNIQGQLGDGTTVSRVLPVRVQGLTG 899



 Score =  102 bits (253), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 101/348 (29%), Positives = 155/348 (44%), Gaps = 69/348 (19%)

Query: 28  AVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWA 87
           +V S+G    G LGL + ++        PT+VPGL +++ +V+ G  HS+A+  +G VWA
Sbjct: 267 SVWSWGKNDAGQLGLGSVVS-----TPTPTQVPGL-TEMVAVTGGGQHSVALRVDGTVWA 320

Query: 88  WGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSK 147
           WG N   QLG G    R +   P +V GL QV   AA   G+ S A+  +G +W WG + 
Sbjct: 321 WGSNARAQLGDGTQTQRLS---PCQVTGLTQVKGVAA-GGGLHSVAVKGNGEVWAWGSNS 376

Query: 148 RGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNL 207
            GQ+G G  + + +VP+    L   +   VS G GH LA   DG  +GWG +A  ++G  
Sbjct: 377 EGQVGDGTYLMK-LVPTTARVLV--ERADVSAGGGHTLALKPDGTAWGWGLNAQSQLG-- 431

Query: 208 GKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVV 267
                                               +G    + +P+     ++    V 
Sbjct: 432 ------------------------------------DGTTTARPLPV----QVLNLTRVA 451

Query: 268 DIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDIN--FHPVSISSGLGHSL 325
            ++ G  HSL L  +G +   G+N +G +G         PV ++     ++++SG  HSL
Sbjct: 452 AVSAGTYHSLALKEDGTVWGWGANYWGAIGDGTALNRSQPVKVSGTLVAMTVASGNFHSL 511

Query: 326 AICEVRSSNVTGGARGIVSWGWNRSSQL--GRMGPD-NVPLVVEGLEG 370
           A+    S         + +WG N   QL  G + P  N P  V  LEG
Sbjct: 512 ALSVDGS---------VWAWGDNSLGQLGDGTVTPTRNAPFRVPNLEG 550



 Score = 97.8 bits (242), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 107/327 (32%), Positives = 157/327 (48%), Gaps = 42/327 (12%)

Query: 20  FMRSASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAV 79
            +  A GT V S+G  + G LG     TG       P RV  L S +T++ AG  HSLA+
Sbjct: 60  LVLKADGT-VWSWGGNNYGQLG-----TGSTRQNPMPARVWRLFS-ITAIGAGELHSLAL 112

Query: 80  TNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQ-VNVCAAFASGVVSSAIGDDG 138
            ++G VW+WG N   QLG G L SR+    P  V GL   V + A F+  +V  A   DG
Sbjct: 113 KSDGTVWSWGANTNGQLGDGTLISRSV---PAPVPGLTNVVAIAAGFSHSMVLKA---DG 166

Query: 139 SLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGY 198
           ++W WG +  GQLG G   T  + P +V  L G K   ++ G  H+LA T DG+L+ WG 
Sbjct: 167 TVWAWGLNAAGQLGDGTP-TRRLTPVQVLGLTGVK--DIAAGNVHSLALTADGRLWTWGG 223

Query: 199 SADGRIGN---LGKALESS-PLDSNIDRSS---------ESDQEISSSTIEKAQKLVSEG 245
           + DG++G    +G++  ++ P  + +   S         + D  + S     A +L   G
Sbjct: 224 NVDGQLGTGDLVGRSTAAALPGMTGVVALSGGGSHSLILKMDGSVWSWGKNDAGQL---G 280

Query: 246 MEKEKYMPIIWEPFLVEGV-EVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMG 304
           +      P    P  V G+ E+V +  G  HS+ L  +G + + GSN   QLG   Q   
Sbjct: 281 LGSVVSTPT---PTQVPGLTEMVAVTGGGQHSVALRVDGTVWAWGSNARAQLGDGTQTQR 337

Query: 305 MFPVDIN----FHPVSISSGLGHSLAI 327
           + P  +        V+   GL HS+A+
Sbjct: 338 LSPCQVTGLTQVKGVAAGGGL-HSVAV 363



 Score = 95.5 bits (236), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 99/330 (30%), Positives = 148/330 (44%), Gaps = 70/330 (21%)

Query: 29   VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAW 88
            V+S+G  ++G LG  T++      A     V G  + V S++ G  HSLA+  +G+V AW
Sbjct: 819  VLSWGANAEGELGDGTTV------ARRAPAVVGPLAGVLSIAVGARHSLALLGDGSVQAW 872

Query: 89   GRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGV-VSSAIGDDGSLWVWGKSK 147
            G N + QLG G   SR     P RV+GL  V   AA A+G   S A+  DG++W WG + 
Sbjct: 873  GSNIQGQLGDGTTVSRVL---PVRVQGLTGV---AAIAAGDGFSLALKHDGTVWAWGGNT 926

Query: 148  RGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNL 207
             GQLG    +  ++VP R +AL G  +  V+ G  H+LA   DG L+ WG +  G +G  
Sbjct: 927  LGQLGDNTTL-RSLVPVRTQALTG--VTAVAAGRNHSLALKGDGTLWAWGSNTYGELG-- 981

Query: 208  GKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVV 267
                                                +G +  K  P+  +   + GV  +
Sbjct: 982  ------------------------------------DGTQARKLAPV--QVTSLTGVSAL 1003

Query: 268  DIACGFDHSLVLGRNGVLLSCGSNVYGQLGRE-KQDMGMFPVDIN--FHPVSISSGLGHS 324
            D   G  HSL +   G +   G N +GQ+G+  K +  + P  +      V+++ G  HS
Sbjct: 1004 D--AGDHHSLAVTSGGKVWGWGRNQFGQVGKGVKSNWQLLPAQVPGLTSAVAVAGGGEHS 1061

Query: 325  LAICEVRSSNVTGGARGIVSWGWNRSSQLG 354
            LA+   RS         + +WG     QLG
Sbjct: 1062 LALLSDRS---------VWAWGHGDMGQLG 1082



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 96/315 (30%), Positives = 137/315 (43%), Gaps = 71/315 (22%)

Query: 50  GGDAYEPTRVPGLP------SDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALES 103
           G DA EP   PG        S   SV AG +HSL +  +G VW+WG NN  QLG G+   
Sbjct: 27  GPDAAEPPEAPGSARAAEGTSRQGSVLAGRHHSLVLKADGTVWSWGGNNYGQLGTGSTRQ 86

Query: 104 RATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVP 163
                 P RV  L   ++ A  A  + S A+  DG++W WG +  GQLG G  I+ + VP
Sbjct: 87  NPM---PARVWRL--FSITAIGAGELHSLALKSDGTVWSWGANTNGQLGDGTLISRS-VP 140

Query: 164 SRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRS 223
           + V  L    +V ++ G+ H++    DG ++ WG +A G++G                  
Sbjct: 141 APVPGL--TNVVAIAAGFSHSMVLKADGTVWAWGLNAAGQLG------------------ 180

Query: 224 SESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNG 283
                               +G    +  P+  +   + GV+  DIA G  HSL L  +G
Sbjct: 181 --------------------DGTPTRRLTPV--QVLGLTGVK--DIAAGNVHSLALTADG 216

Query: 284 VLLSCGSNVYGQLGR----EKQDMGMFPVDINFHPVSISSGLGHSLAICEVRSSNVTGGA 339
            L + G NV GQLG      +      P       V++S G  HSL I ++  S      
Sbjct: 217 RLWTWGGNVDGQLGTGDLVGRSTAAALPGMTGV--VALSGGGSHSL-ILKMDGS------ 267

Query: 340 RGIVSWGWNRSSQLG 354
             + SWG N + QLG
Sbjct: 268 --VWSWGKNDAGQLG 280



 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 87/289 (30%), Positives = 135/289 (46%), Gaps = 28/289 (9%)

Query: 56  PTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEG 115
           P +V GL + V  ++AG+ HSLA+T +G +W WG N + QLG G L  R+T      + G
Sbjct: 190 PVQVLGL-TGVKDIAAGNVHSLALTADGRLWTWGGNVDGQLGTGDLVGRST---AAALPG 245

Query: 116 LDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIV 175
           +    V A    G  S  +  DGS+W WGK+  GQLGLG  +     P++V  L   ++V
Sbjct: 246 M--TGVVALSGGGSHSLILKMDGSVWSWGKNDAGQLGLGS-VVSTPTPTQVPGL--TEMV 300

Query: 176 KVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDS---NIDRSSESDQEISS 232
            V+ G  H++A   DG ++ WG +A  ++G+  +    SP         +   +   + S
Sbjct: 301 AVTGGGQHSVALRVDGTVWAWGSNARAQLGDGTQTQRLSPCQVTGLTQVKGVAAGGGLHS 360

Query: 233 STIE----------KAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRN 282
             ++           ++  V +G    K +P          VE  D++ G  H+L L  +
Sbjct: 361 VAVKGNGEVWAWGSNSEGQVGDGTYLMKLVPTTARVL----VERADVSAGGGHTLALKPD 416

Query: 283 GVLLSCGSNVYGQLGREKQDMGMFPVDI-NFHPV-SISSGLGHSLAICE 329
           G     G N   QLG         PV + N   V ++S+G  HSLA+ E
Sbjct: 417 GTAWGWGLNAQSQLGDGTTTARPLPVQVLNLTRVAAVSAGTYHSLALKE 465



 Score = 84.3 bits (207), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 92/305 (30%), Positives = 137/305 (44%), Gaps = 65/305 (21%)

Query: 55   EPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVE 114
            EP  V GL S+  +++ G  H LA+  +G V +WG N E +LG G   +R     P  V 
Sbjct: 790  EPVPVIGL-SECRAIAGGATHGLALKTDGRVLSWGANAEGELGDGTTVAR---RAPAVVG 845

Query: 115  GLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKI 174
             L  V   A  A    S A+  DGS+  WG + +GQLG G  ++  ++P RV+ L G  +
Sbjct: 846  PLAGVLSIAVGAR--HSLALLGDGSVQAWGSNIQGQLGDGTTVSR-VLPVRVQGLTG--V 900

Query: 175  VKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSST 234
              ++ G G +LA   DG ++ WG +  G++G+                    +  + S  
Sbjct: 901  AAIAAGDGFSLALKHDGTVWAWGGNTLGQLGD--------------------NTTLRSLV 940

Query: 235  IEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYG 294
              + Q L                        V  +A G +HSL L  +G L + GSN YG
Sbjct: 941  PVRTQALTG----------------------VTAVAAGRNHSLALKGDGTLWAWGSNTYG 978

Query: 295  QLGREKQDMGMFPVDI-NFHPVS-ISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQ 352
            +LG   Q   + PV + +   VS + +G  HSLA        VT G +    WGW R +Q
Sbjct: 979  ELGDGTQARKLAPVQVTSLTGVSALDAGDHHSLA--------VTSGGK---VWGWGR-NQ 1026

Query: 353  LGRMG 357
             G++G
Sbjct: 1027 FGQVG 1031



 Score = 84.3 bits (207), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 105/357 (29%), Positives = 161/357 (45%), Gaps = 43/357 (12%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAW 88
           V  +G    GA+G  T+L     +  +P +V G    +T V++G++HSLA++ +G+VWAW
Sbjct: 469 VWGWGANYWGAIGDGTAL-----NRSQPVKVSGTLVAMT-VASGNFHSLALSVDGSVWAW 522

Query: 89  GRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKR 148
           G N+  QLG G +    T N P RV  L+   V +  A G  S A+  DG++WVWG+   
Sbjct: 523 GDNSLGQLGDGTVTP--TRNAPFRVPNLE--GVVSLAAGGEHSLALKADGTVWVWGRQD- 577

Query: 149 GQLGLGKDITEAI-VPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNL 207
                 +++   + VP +V+ L     V V  G  H++    DG L+ WG +A+G++ + 
Sbjct: 578 -TCADPENVGRVLRVPEQVQGL--TDAVAVRAGRCHSVVLRADGTLWAWGRNAEGQLADG 634

Query: 208 GKALESSP-----LDSNIDRSSESDQEISSSTI-------EKAQKLVSEGMEKEKYMPII 255
                 +P     L   I  S  S+Q ++             AQ  +  G+   +  P  
Sbjct: 635 TFTDRMTPARVDGLTGVISFSVGSEQTLALKADGTAWAWGPNAQGQLGGGLSVPRTRPTQ 694

Query: 256 WEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFHPV 315
             P L    +V  +A G  H+LVL  +  L + GSN  GQ+G    D    PV       
Sbjct: 695 -VPTL---TDVRTVAMGAVHALVLKDDLTLWAWGSNAEGQVGDGALDWQAAPVRSGLAAS 750

Query: 316 -SISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQL--GRMGPDNVPLVVEGLE 369
             +++   +SL I    S   TG          N S QL  G + P   P+ V GL 
Sbjct: 751 RGLAAATQYSLGIALDGSVQSTGA---------NASGQLGDGTLFPRAEPVPVIGLS 798



 Score = 62.0 bits (149), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 54/157 (34%), Positives = 79/157 (50%), Gaps = 14/157 (8%)

Query: 4    LKSVVHNHVNVLTSRIFMRSASGTAVVSFGDGSQGALGLPTSLTGVGGDAYE-----PTR 58
            L+S+V      LT    + +    ++   GDG+  A G  ++  G  GD  +     P +
Sbjct: 936  LRSLVPVRTQALTGVTAVAAGRNHSLALKGDGTLWAWG--SNTYGELGDGTQARKLAPVQ 993

Query: 59   VPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWN-DPKRVEGLD 117
            V  L + V+++ AG +HSLAVT+ G VW WGRN   Q+G+G    ++ W   P +V GL 
Sbjct: 994  VTSL-TGVSALDAGDHHSLAVTSGGKVWGWGRNQFGQVGKGV---KSNWQLLPAQVPGL- 1048

Query: 118  QVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLG 154
              +  A    G  S A+  D S+W WG    GQLG G
Sbjct: 1049 -TSAVAVAGGGEHSLALLSDRSVWAWGHGDMGQLGTG 1084



 Score = 40.4 bits (93), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 37/104 (35%), Positives = 49/104 (47%), Gaps = 13/104 (12%)

Query: 269 IACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDI--NFHPVSISSGLGHSLA 326
           +  G  HSLVL  +G + S G N YGQLG         P  +   F   +I +G  HSLA
Sbjct: 52  VLAGRHHSLVLKADGTVWSWGGNNYGQLGTGSTRQNPMPARVWRLFSITAIGAGELHSLA 111

Query: 327 ICEVRSSNVTGGARGIVSWGWNRSSQL--GRMGPDNVPLVVEGL 368
           +     S+ T     + SWG N + QL  G +   +VP  V GL
Sbjct: 112 L----KSDGT-----VWSWGANTNGQLGDGTLISRSVPAPVPGL 146


>gi|440898458|gb|ELR49953.1| RCC1 and BTB domain-containing protein 2, partial [Bos grunniens
           mutus]
          Length = 544

 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 59/152 (38%), Positives = 89/152 (58%), Gaps = 5/152 (3%)

Query: 65  DVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAA 124
            V  V+ G YHSL +T++G V+AWG NN  Q+G G   S A    P+RV G  Q  V   
Sbjct: 146 QVIEVACGSYHSLVLTSDGEVFAWGYNNSGQVGSG---STANQPIPRRVTGCLQSKVVVN 202

Query: 125 FASG-VVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGH 183
            A G + S A+ + G ++VWG +  GQLGLG    +   P RV AL G ++ +V+ G+ H
Sbjct: 203 IACGQMCSMAVVNTGEVFVWGYNGNGQLGLGSSGNQP-TPCRVAALQGIRVQRVACGYAH 261

Query: 184 ALAQTEDGKLFGWGYSADGRIGNLGKALESSP 215
            L  T++G+++ WG ++ G++G   K+ +S P
Sbjct: 262 TLVLTDEGQVYAWGANSYGQLGTGNKSNQSYP 293



 Score = 85.5 bits (210), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 73/289 (25%), Positives = 127/289 (43%), Gaps = 25/289 (8%)

Query: 77  LAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNV-CAAFASGVVSSAIG 135
           L  T N  ++  G N    LG G ++S     +P+R++ L    + C ++ SG       
Sbjct: 52  LYTTVNDEIFVLGTNCCGCLGLGDVQSTI---EPRRLDSLSGKKIACLSYGSGPHIVLAT 108

Query: 136 DDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEA-LAGEKIVKVSFGWGHALAQTEDGKLF 194
            +G ++ WG +   QLG G      +VP  +   L+ +++++V+ G  H+L  T DG++F
Sbjct: 109 TEGEVFTWGHNAYSQLGNGT-TNAGLVPYHISTNLSNKQVIEVACGSYHSLVLTSDGEVF 167

Query: 195 GWGYSADGRIGNLGKALESSP------LDSNIDRSSESDQEISSSTIEKAQKLV------ 242
            WGY+  G++G+   A +  P      L S +  +    Q  S + +   +  V      
Sbjct: 168 AWGYNNSGQVGSGSTANQPIPRRVTGCLQSKVVVNIACGQMCSMAVVNTGEVFVWGYNGN 227

Query: 243 -SEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQ 301
              G+      P       ++G+ V  +ACG+ H+LVL   G + + G+N YGQLG   +
Sbjct: 228 GQLGLGSSGNQPTPCRVAALQGIRVQRVACGYAHTLVLTDEGQVYAWGANSYGQLGTGNK 287

Query: 302 DMGMFPVDINFHPVSISSGLGHSLAICEVRSSNVTGGARG-IVSWGWNR 349
               +P      PV +       +A C    ++      G +  WG  R
Sbjct: 288 SNQSYPT-----PVVVEKDRIIEIAACHSAHTSAAKTQGGHVYMWGQCR 331



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 64/256 (25%), Positives = 113/256 (44%), Gaps = 49/256 (19%)

Query: 118 QVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKV 177
           Q  V  + ++ ++ + + D+  ++V G +  G LGLG D+   I P R+++L+G+KI  +
Sbjct: 40  QACVFGSASNELLYTTVNDE--IFVLGTNCCGCLGLG-DVQSTIEPRRLDSLSGKKIACL 96

Query: 178 SFGWG-HALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIE 236
           S+G G H +  T +G++F WG++A  ++GN        P   + + S++           
Sbjct: 97  SYGSGPHIVLATTEGEVFTWGHNAYSQLGNGTTNAGLVPYHISTNLSNK----------- 145

Query: 237 KAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQL 296
                                       +V+++ACG  HSLVL  +G + + G N  GQ+
Sbjct: 146 ----------------------------QVIEVACGSYHSLVLTSDGEVFAWGYNNSGQV 177

Query: 297 GREKQDMGMFPVDINFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQ--LG 354
           G         P  +      + S +  ++A  ++ S  V       V WG+N + Q  LG
Sbjct: 178 GSGSTANQPIPRRVT---GCLQSKVVVNIACGQMCSMAVVNTGEVFV-WGYNGNGQLGLG 233

Query: 355 RMGPDNVPLVVEGLEG 370
             G    P  V  L+G
Sbjct: 234 SSGNQPTPCRVAALQG 249


>gi|431902378|gb|ELK08879.1| RCC1 and BTB domain-containing protein 2 [Pteropus alecto]
          Length = 621

 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 63/177 (35%), Positives = 98/177 (55%), Gaps = 5/177 (2%)

Query: 65  DVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAA 124
            V  V+ G YHSL +T++G V+AWG NN  Q+G G   S A    P+RV G  Q  V   
Sbjct: 223 QVIEVACGSYHSLVLTSDGEVFAWGYNNSGQVGSG---STANQPIPRRVTGCLQNKVVVN 279

Query: 125 FASG-VVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGH 183
            A G + S A+ D+G ++VWG +  GQLGLG    ++  P R+ AL G  + +V+ G+ H
Sbjct: 280 IACGQMCSVAVVDNGEVYVWGYNGNGQLGLGSSGNQS-TPCRIAALQGICVQRVACGYAH 338

Query: 184 ALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQK 240
            L  T++G+++ WG ++ G++G   K+ +S P    +++    +     ST   A K
Sbjct: 339 TLVLTDEGQVYVWGANSYGQLGTGNKSNQSYPTPVAVEKDRIIEIAACHSTHTSAAK 395



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 71/289 (24%), Positives = 127/289 (43%), Gaps = 25/289 (8%)

Query: 77  LAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNV-CAAFASGVVSSAIG 135
           L  T N  ++  G N    LG G ++S     +P+R++ L    + C ++ SG       
Sbjct: 129 LYSTVNDEIFVLGTNCCGCLGLGDIQSTI---EPRRLDSLSGKKIACFSYGSGPHVILAT 185

Query: 136 DDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEA-LAGEKIVKVSFGWGHALAQTEDGKLF 194
            +G ++ WG +   QLG G      +VP  +   L+ +++++V+ G  H+L  T DG++F
Sbjct: 186 TEGEIFTWGHNAYSQLGNGT-TNHGLVPCHISTNLSNKQVIEVACGSYHSLVLTSDGEVF 244

Query: 195 GWGYSADGRIGNLGKALESSP------LDSNIDRSSESDQEISSSTIEKAQKLV------ 242
            WGY+  G++G+   A +  P      L + +  +    Q  S + ++  +  V      
Sbjct: 245 AWGYNNSGQVGSGSTANQPIPRRVTGCLQNKVVVNIACGQMCSVAVVDNGEVYVWGYNGN 304

Query: 243 -SEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQ 301
              G+              ++G+ V  +ACG+ H+LVL   G +   G+N YGQLG   +
Sbjct: 305 GQLGLGSSGNQSTPCRIAALQGICVQRVACGYAHTLVLTDEGQVYVWGANSYGQLGTGNK 364

Query: 302 DMGMFPVDINFHPVSISSGLGHSLAICEVRSSNVTGGARG-IVSWGWNR 349
               +P      PV++       +A C    ++      G +  WG  R
Sbjct: 365 SNQSYPT-----PVAVEKDRIIEIAACHSTHTSAAKTQGGHVYMWGQCR 408


>gi|338530520|ref|YP_004663854.1| RCC1 repeat-containing protein [Myxococcus fulvus HW-1]
 gi|337256616|gb|AEI62776.1| RCC1 repeat-containing protein [Myxococcus fulvus HW-1]
          Length = 1457

 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 115/361 (31%), Positives = 168/361 (46%), Gaps = 49/361 (13%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAW 88
           V ++G  S G LG  T+      D   P +V GL +DV +V+AG +HSLA+  +G VWAW
Sbjct: 121 VWAWGGNSSGQLGDGTTT-----DRVTPMQVAGL-TDVVAVAAGDFHSLALRGDGTVWAW 174

Query: 89  GRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGV-VSSAIGDDGSLWVWGKSK 147
           G N   QLGRG  E   T   P+ V GL+ V    A A+G   + A+ DDG++  WG + 
Sbjct: 175 GTNFHGQLGRGHTEPGLT---PEPVPGLEGV---VALAAGFDFTLAVMDDGTVRAWGANS 228

Query: 148 RGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNL 207
            GQLG G   T+ + P  V  ++G  I  V+ G  HA+A  +DG ++ WG ++ G++G+ 
Sbjct: 229 SGQLGDGT-FTQRLAPVEVAHISG--ISAVTAGTYHAVALGKDGGVWTWGANSSGQLGDG 285

Query: 208 G----------KALESSPLDSNIDRSSESDQEISSSTIEKAQ---KLVSEGMEKEKYMPI 254
                        LE     +++D SS +  E  S     A    +L   G +       
Sbjct: 286 AWSDRAVPARVPGLERVKAVASMDASSLALLEAGSVLAWGANGSGQLGDSGTDDRA---- 341

Query: 255 IWEPFLVEGVE-VVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDI--N 311
              P  V G+  V  +  G  H+L L  +G L + G  + GQLG    +  + P  +   
Sbjct: 342 --TPGEVPGLRSVAAVVGGAQHALALRGDGTLWAWGGGLAGQLGHGGSERHVVPAPLLRL 399

Query: 312 FHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQL--GRMGPDNVPLVVEGLE 369
               S+++G  HSLA           G   + SWG N   QL  G     +  + VEGL 
Sbjct: 400 ADVASMAAGSFHSLAAL---------GDGTVWSWGRNTYGQLGDGTTAERHAAVRVEGLS 450

Query: 370 G 370
           G
Sbjct: 451 G 451



 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 106/322 (32%), Positives = 144/322 (44%), Gaps = 72/322 (22%)

Query: 56  PTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWND---PKR 112
           P +V GL ++VT V+AG  H+LAV  +G VWAWG N E QLG G      TW+D   P +
Sbjct: 593 PVQVAGL-TNVTRVAAGSAHALAVRGDGTVWAWGDNGEGQLGDG------TWSDRFRPVQ 645

Query: 113 VEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGE 172
           V GL  +   +   S   S A+  DGS+  WG +  GQLG G   T  + P+ V  L G 
Sbjct: 646 VPGLTGITAVSGGRS--HSMALHGDGSVRAWGYNGYGQLGDGT-FTSRVRPAVVPGLTGI 702

Query: 173 KIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISS 232
           + +  S    H LA   DG L GWGY+  G++G LG A  SS                  
Sbjct: 703 QALHPSH--LHVLALHADGTLRGWGYNRFGQLG-LGAAGWSS------------------ 741

Query: 233 STIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVD-IACGFDHSLVLGRNGVLLSCGSN 291
                                    P  V G+  VD +A G  H+L++  +G +L+ G N
Sbjct: 742 ------------------------RPVQVRGLGRVDRLAVGRAHTLMVRPDGAVLAWGEN 777

Query: 292 VYGQLGREKQDMGMFPVDINFHPV--SISSGLGHSLAICEVRSSNVTGGARGIVSWGWNR 349
             GQLG         PV +   P   S++SG+ HSLA+    S         + +WG N 
Sbjct: 778 ASGQLGDGTTTHRAGPVLVRGVPCVRSVASGVLHSLALACDGS---------VWAWGANG 828

Query: 350 SSQL--GRMGPDNVPLVVEGLE 369
             QL  G      +P  V+GL+
Sbjct: 829 RGQLGDGTTASRVIPARVDGLQ 850



 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 109/338 (32%), Positives = 153/338 (45%), Gaps = 76/338 (22%)

Query: 24   ASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNG 83
            A GT V ++GD + G LG  T+          P  V GL + V +VS G +HSLA+ ++G
Sbjct: 1123 ADGT-VQAWGDNAHGQLGDGTTER-----RAAPVVVRGL-TGVVAVSTGAWHSLALRSDG 1175

Query: 84   AVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVW 143
             VWAWG N   QLG G   SR T   P RV GL +  V A  A G  + A+  DGS+W W
Sbjct: 1176 TVWAWGANGFGQLGDGTTLSRTT---PVRVAGLQK--VVAIGAGGYHALAVRSDGSVWAW 1230

Query: 144  GKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGR 203
            G +  GQLG G   +  ++P RVE L+   +  V+ G  H+LA   DG L  WG +A G+
Sbjct: 1231 GYNAFGQLGDGTAESR-LLPVRVEGLS--NVTSVAGGDHHSLALLADGSLGAWGNNAAGQ 1287

Query: 204  IGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEG 263
            +G                                      +G    +Y  +      V+G
Sbjct: 1288 LG--------------------------------------DGTGTTRYSRV-----WVKG 1304

Query: 264  VE-VVDIACGFDHSLVLGRNGVLLSCGSNVYGQLG----REKQDMGMFPVDINFHPVSIS 318
            V+ VV++  G  H+L L  +G + + G N + QLG      +  +   PV       +I 
Sbjct: 1305 VDGVVEVRAGAAHTLALRGDGTVWTWGDNTHSQLGAGDDSTRTRIVPRPVPGLSGVTAIG 1364

Query: 319  SGLGHSLAICEVRSSNVTGGARGIVSWGWNRSS--QLG 354
            +G  HS A+          G +G V W W R+S  QLG
Sbjct: 1365 AGARHSFAV----------GPKGTV-WAWGRNSHGQLG 1391



 Score = 95.1 bits (235), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 94/318 (29%), Positives = 138/318 (43%), Gaps = 64/318 (20%)

Query: 56  PTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEG 115
           P  +P  P D+ SV +G  HSLA+   G VWAWG N+  QLG G    R T   P +V G
Sbjct: 93  PAPLPS-PRDIVSVVSGEAHSLALDEAGTVWAWGGNSSGQLGDGTTTDRVT---PMQVAG 148

Query: 116 LDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIV 175
           L   +V A  A    S A+  DG++W WG +  GQLG G      + P  V  L  E +V
Sbjct: 149 L--TDVVAVAAGDFHSLALRGDGTVWAWGTNFHGQLGRGH-TEPGLTPEPVPGL--EGVV 203

Query: 176 KVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTI 235
            ++ G+   LA  +DG +  WG ++ G++G                              
Sbjct: 204 ALAAGFDFTLAVMDDGTVRAWGANSSGQLG------------------------------ 233

Query: 236 EKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQ 295
                   +G   ++  P+  E   + G+  V    G  H++ LG++G + + G+N  GQ
Sbjct: 234 --------DGTFTQRLAPV--EVAHISGISAV--TAGTYHAVALGKDGGVWTWGANSSGQ 281

Query: 296 LGREKQDMGMFPVDI-NFHPV-SISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQL 353
           LG         P  +     V +++S    SLA+ E  S         +++WG N S QL
Sbjct: 282 LGDGAWSDRAVPARVPGLERVKAVASMDASSLALLEAGS---------VLAWGANGSGQL 332

Query: 354 GRMGPDN--VPLVVEGLE 369
           G  G D+   P  V GL 
Sbjct: 333 GDSGTDDRATPGEVPGLR 350



 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 98/325 (30%), Positives = 143/325 (44%), Gaps = 72/325 (22%)

Query: 59   VPG---LPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEG 115
            VPG   LPS++ SV+ G  H LA   +GA+WAWG N   QLG G+     T   P RV+G
Sbjct: 892  VPGQLKLPSNIMSVALGETHGLAAGEDGALWAWGANGSGQLGEGSTTPSPT---PVRVKG 948

Query: 116  LDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIV 175
            L+   V +  A    S A+  DG+ W WG +  GQLG G + ++  VP +V ++  +++ 
Sbjct: 949  LE--GVASVSAGRAFSLAVRQDGTAWAWGANPSGQLGDGTNHSQR-VPKQVTSV--KRVR 1003

Query: 176  KVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTI 235
             +S G  H +A  EDG ++ WG   D  +G LG                           
Sbjct: 1004 AMSAGAHHVVALGEDGAVWTWG---DNTLGQLG--------------------------- 1033

Query: 236  EKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQ 295
                    +G     +M   W   + E  +V  +A G   S+ +   G   + GSN YGQ
Sbjct: 1034 --------DGTSAPTWM---WPRQVPELRDVEAVAAGEQFSVAVLVGGGAHAWGSNEYGQ 1082

Query: 296  LGREKQDMGMFPVDINF------HPV-SISSGLGHSLAICEVRSSNVTGGARGIV-SWGW 347
            LG  K    + PV +         PV ++ +   H++A+           A G V +WG 
Sbjct: 1083 LGDGKTGPRLTPVQVRIEASKLRQPVRTVRAWAQHAVALM----------ADGTVQAWGD 1132

Query: 348  NRSSQLGRMGPDN--VPLVVEGLEG 370
            N   QLG    +    P+VV GL G
Sbjct: 1133 NAHGQLGDGTTERRAAPVVVRGLTG 1157



 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 108/362 (29%), Positives = 167/362 (46%), Gaps = 55/362 (15%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAW 88
           V S+G  + G LG      G   + +   RV GL S +  V+A  +HSLAV  +G VWAW
Sbjct: 421 VWSWGRNTYGQLG-----DGTTAERHAAVRVEGL-SGIRGVAASGHHSLAVGADGTVWAW 474

Query: 89  GRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKR 148
           GRN   QLG G+   RA    P  V GL   +V A    G  + A+  DG++W WG +  
Sbjct: 475 GRNAAGQLGDGSTRDRAR---PVAVSGL--TSVVAVATGGSHTMALRGDGTVWAWGYNAL 529

Query: 149 GQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLG 208
           GQLG G  + + + P RV  L  + +V V+ G   ++A   DG ++ WG   +G++G+ G
Sbjct: 530 GQLGDGTTV-DRLTPVRVARL--DSVVAVAAGTYFSMALRGDGTVWTWGEGFEGQVGDGG 586

Query: 209 KALESSPLD----SNIDR----SSESDQEISSSTI----EKAQKLVSEGMEKEKYMPIIW 256
                 P+     +N+ R    S+ +       T+    +  +  + +G   +++ P+  
Sbjct: 587 GVQRLFPVQVAGLTNVTRVAAGSAHALAVRGDGTVWAWGDNGEGQLGDGTWSDRFRPV-- 644

Query: 257 EPFLVEGVE-VVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDI----- 310
               V G+  +  ++ G  HS+ L  +G + + G N YGQLG       + P  +     
Sbjct: 645 ---QVPGLTGITAVSGGRSHSMALHGDGSVRAWGYNGYGQLGDGTFTSRVRPAVVPGLTG 701

Query: 311 --NFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQ--LGRMGPDNVPLVVE 366
               HP  +     H LA+      +  G  RG   WG+NR  Q  LG  G  + P+ V 
Sbjct: 702 IQALHPSHL-----HVLAL------HADGTLRG---WGYNRFGQLGLGAAGWSSRPVQVR 747

Query: 367 GL 368
           GL
Sbjct: 748 GL 749



 Score = 87.8 bits (216), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 91/279 (32%), Positives = 130/279 (46%), Gaps = 24/279 (8%)

Query: 29   VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAW 88
            V ++G    G LG  T+L+        P RV GL   V ++ AG YH+LAV ++G+VWAW
Sbjct: 1177 VWAWGANGFGQLGDGTTLS-----RTTPVRVAGL-QKVVAIGAGGYHALAVRSDGSVWAW 1230

Query: 89   GRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKR 148
            G N   QLG G  ESR     P RVEGL   NV +       S A+  DGSL  WG +  
Sbjct: 1231 GYNAFGQLGDGTAESRLL---PVRVEGLS--NVTSVAGGDHHSLALLADGSLGAWGNNAA 1285

Query: 149  GQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLG 208
            GQLG G   T     SRV     + +V+V  G  H LA   DG ++ WG +   ++G   
Sbjct: 1286 GQLGDGTGTTRY---SRVWVKGVDGVVEVRAGAAHTLALRGDGTVWTWGDNTHSQLGAGD 1342

Query: 209  KALES----SPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPI-----IWEPF 259
             +  +     P+      ++       S  +     + + G      + +       EP 
Sbjct: 1343 DSTRTRIVPRPVPGLSGVTAIGAGARHSFAVGPKGTVWAWGRNSHGQLGLGDNANRAEPL 1402

Query: 260  LV-EGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLG 297
             V E  EV  ++ G D SL + R+G + S GS+++G LG
Sbjct: 1403 RVKELAEVSVVSGGADFSLAMQRDGTVSSWGSSLHGALG 1441



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 94/316 (29%), Positives = 143/316 (45%), Gaps = 41/316 (12%)

Query: 62   LPSDVTSV------SAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEG 115
            +P  VTSV      SAG +H +A+  +GAVW WG N   QLG G   S  TW  P++V  
Sbjct: 992  VPKQVTSVKRVRAMSAGAHHVVALGEDGAVWTWGDNTLGQLGDG--TSAPTWMWPRQVPE 1049

Query: 116  LDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAI-VPSRVEALAGEKI 174
            L  V   AA     V+  +G  G    WG ++ GQLG GK       V  R+EA    + 
Sbjct: 1050 LRDVEAVAAGEQFSVAVLVG--GGAHAWGSNEYGQLGDGKTGPRLTPVQVRIEASKLRQP 1107

Query: 175  VKVSFGWG-HALAQTEDGKLFGWGYSADGRIGNLGKALESSP-----LDSNIDRSSESDQ 228
            V+    W  HA+A   DG +  WG +A G++G+      ++P     L   +  S+ +  
Sbjct: 1108 VRTVRAWAQHAVALMADGTVQAWGDNAHGQLGDGTTERRAAPVVVRGLTGVVAVSTGAWH 1167

Query: 229  EI---SSSTI----EKAQKLVSEGMEKEKYMPIIWEPFLVEGVE-VVDIACGFDHSLVLG 280
             +   S  T+          + +G    +  P+      V G++ VV I  G  H+L + 
Sbjct: 1168 SLALRSDGTVWAWGANGFGQLGDGTTLSRTTPV-----RVAGLQKVVAIGAGGYHALAVR 1222

Query: 281  RNGVLLSCGSNVYGQLGREKQDMGMFPVDIN--FHPVSISSGLGHSLAICEVRSSNVTGG 338
             +G + + G N +GQLG    +  + PV +    +  S++ G  HSLA+    S      
Sbjct: 1223 SDGSVWAWGYNAFGQLGDGTAESRLLPVRVEGLSNVTSVAGGDHHSLALLADGS------ 1276

Query: 339  ARGIVSWGWNRSSQLG 354
               + +WG N + QLG
Sbjct: 1277 ---LGAWGNNAAGQLG 1289



 Score = 82.0 bits (201), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 93/310 (30%), Positives = 139/310 (44%), Gaps = 72/310 (23%)

Query: 69  VSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALE----SRATWNDPKRVEGLDQVNVCAA 124
           ++AG  HSL V+  GAVWAWG N   QLG  A      + A    P+     D V+V + 
Sbjct: 54  IAAGSQHSLYVSPTGAVWAWGGNTSGQLGGEATPLQRLAPAPLPSPR-----DIVSVVSG 108

Query: 125 FASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHA 184
            A    S A+ + G++W WG +  GQLG G   T+ + P +V  L    +V V+ G  H+
Sbjct: 109 EAH---SLALDEAGTVWAWGGNSSGQLGDGT-TTDRVTPMQVAGL--TDVVAVAAGDFHS 162

Query: 185 LAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSE 244
           LA   DG ++ WG +  G++G                                       
Sbjct: 163 LALRGDGTVWAWGTNFHGQLG--------------------------------------R 184

Query: 245 GMEKEKYMPIIWEPFLVEGVE-VVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDM 303
           G  +    P   EP  V G+E VV +A GFD +L +  +G + + G+N  GQLG      
Sbjct: 185 GHTEPGLTP---EP--VPGLEGVVALAAGFDFTLAVMDDGTVRAWGANSSGQLGDGTFTQ 239

Query: 304 GMFPVDI-NFHPVS-ISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPDN- 360
            + PV++ +   +S +++G  H++A+         G   G+ +WG N S QLG     + 
Sbjct: 240 RLAPVEVAHISGISAVTAGTYHAVAL---------GKDGGVWTWGANSSGQLGDGAWSDR 290

Query: 361 -VPLVVEGLE 369
            VP  V GLE
Sbjct: 291 AVPARVPGLE 300



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 69/185 (37%), Positives = 91/185 (49%), Gaps = 12/185 (6%)

Query: 31   SFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGR 90
            ++G+ + G LG      G G   Y    V G+   V  V AG  H+LA+  +G VW WG 
Sbjct: 1279 AWGNNAAGQLG-----DGTGTTRYSRVWVKGV-DGVVEVRAGAAHTLALRGDGTVWTWGD 1332

Query: 91   NNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQ 150
            N   QLG G   +R T   P+ V GL  V    A A    S A+G  G++W WG++  GQ
Sbjct: 1333 NTHSQLGAGDDSTR-TRIVPRPVPGLSGVTAIGAGAR--HSFAVGPKGTVWAWGRNSHGQ 1389

Query: 151  LGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKA 210
            LGLG +   A  P RV+ LA  ++  VS G   +LA   DG +  WG S  G +G     
Sbjct: 1390 LGLGDNANRA-EPLRVKELA--EVSVVSGGADFSLAMQRDGTVSSWGSSLHGALGLGTAG 1446

Query: 211  LESSP 215
              SSP
Sbjct: 1447 QRSSP 1451



 Score = 54.7 bits (130), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 50/196 (25%), Positives = 93/196 (47%), Gaps = 30/196 (15%)

Query: 175 VKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALE---SSPLDSNIDRSSESDQEIS 231
           ++++ G  H+L  +  G ++ WG +  G++G     L+    +PL S  D  S    E  
Sbjct: 52  MRIAAGSQHSLYVSPTGAVWAWGGNTSGQLGGEATPLQRLAPAPLPSPRDIVSVVSGEAH 111

Query: 232 SSTIEKAQKL----------VSEGMEKEKYMPIIWEPFLVEGV-EVVDIACGFDHSLVLG 280
           S  +++A  +          + +G   ++  P+      V G+ +VV +A G  HSL L 
Sbjct: 112 SLALDEAGTVWAWGGNSSGQLGDGTTTDRVTPM-----QVAGLTDVVAVAAGDFHSLALR 166

Query: 281 RNGVLLSCGSNVYGQLGREKQDMGMFPVDINFHP--VSISSGLGHSLAICEVRSSNVTGG 338
            +G + + G+N +GQLGR   + G+ P  +      V++++G   +LA+ +  +      
Sbjct: 167 GDGTVWAWGTNFHGQLGRGHTEPGLTPEPVPGLEGVVALAAGFDFTLAVMDDGT------ 220

Query: 339 ARGIVSWGWNRSSQLG 354
              + +WG N S QLG
Sbjct: 221 ---VRAWGANSSGQLG 233


>gi|115375506|ref|ZP_01462765.1| regulator of chromosome condensation [Stigmatella aurantiaca
           DW4/3-1]
 gi|115367461|gb|EAU66437.1| regulator of chromosome condensation [Stigmatella aurantiaca
           DW4/3-1]
          Length = 531

 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 97/299 (32%), Positives = 131/299 (43%), Gaps = 72/299 (24%)

Query: 71  AGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVV 130
           AG  H+  V   GA++ WGRNN  QLG GA E  A    PK V G++ V   A   +   
Sbjct: 167 AGGSHT-GVVRQGALYLWGRNNRGQLGLGA-EVTADQRVPKPVPGMEGVAAVALNQNH-- 222

Query: 131 SSAIGDDGSLWVWGKSKRGQLGLGK----------DITEAIVPSRVEALAGEKIVKVSFG 180
           S A+ +DG++W WG++ +GQLGLGK          D+T    P+RVE L+G   V ++ G
Sbjct: 223 SMALKEDGTVWAWGENAQGQLGLGKPPEAGQPRTPDLTARWSPTRVEGLSG--AVALALG 280

Query: 181 WGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQK 240
           + H+L   EDG +  +G   D   G LG     SP D                       
Sbjct: 281 YRHSLVLMEDGTVRAFG---DNSTGQLGDGTTESPRDY---------------------- 315

Query: 241 LVSEGMEKEKYMPIIWEPFLVEGV-EVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGRE 299
                            P LV G+ EVV +  G  HS+ L R+G +   G N YG LG+ 
Sbjct: 316 -----------------PVLVGGLTEVVKVVAGSMHSVALKRDGTVWVWGRNTYGNLGQG 358

Query: 300 KQDMGMFPVDINF----HPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLG 354
            QD    P         + V I++G  H L +         GG   + SWG + S QLG
Sbjct: 359 TQDSTAHPTPAQVPGVANGVDIATGRDHILVLH-------AGGT--VSSWGLDASGQLG 408



 Score = 85.5 bits (210), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 107/364 (29%), Positives = 152/364 (41%), Gaps = 83/364 (22%)

Query: 28  AVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWA 87
           A+  +G  ++G LGL   +T    D   P  VPG+   V +V+    HS+A+  +G VWA
Sbjct: 179 ALYLWGRNNRGQLGLGAEVTA---DQRVPKPVPGM-EGVAAVALNQNHSMALKEDGTVWA 234

Query: 88  WGRNNEVQLGRG----ALESR-----ATWNDPKRVEGLDQVNVCAAFASGVVSSAIG--- 135
           WG N + QLG G    A + R     A W+ P RVEGL          SG V+ A+G   
Sbjct: 235 WGENAQGQLGLGKPPEAGQPRTPDLTARWS-PTRVEGL----------SGAVALALGYRH 283

Query: 136 -----DDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTED 190
                +DG++  +G +  GQLG G   +    P  V  L   ++VKV  G  H++A   D
Sbjct: 284 SLVLMEDGTVRAFGDNSTGQLGDGTTESPRDYPVLVGGLT--EVVKVVAGSMHSVALKRD 341

Query: 191 GKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEK 250
           G ++ WG +  G +G                                      +G +   
Sbjct: 342 GTVWVWGRNTYGNLG--------------------------------------QGTQDST 363

Query: 251 YMPIIWEPFLVEGVEV-VDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVD 309
             P    P  V GV   VDIA G DH LVL   G + S G +  GQLG  +      P +
Sbjct: 364 AHPT---PAQVPGVANGVDIATGRDHILVLHAGGTVSSWGLDASGQLGFGE----AIPGE 416

Query: 310 INFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGR--MGPDNVPL-VVE 366
            +  PV + + +           S        ++SWG N + QLG       NVP+   E
Sbjct: 417 QSNAPVQVKNLVDARFVFANGNMSYAQRADGTLLSWGQNFNGQLGNGSKTDTNVPVPAAE 476

Query: 367 GLEG 370
           GL+G
Sbjct: 477 GLKG 480



 Score = 81.3 bits (199), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 84/295 (28%), Positives = 140/295 (47%), Gaps = 36/295 (12%)

Query: 29  VVSFGDGSQGALGL---PTSLTGVGGD---AYEPTRVPGLPSDVTSVSAGHYHSLAVTNN 82
           V ++G+ +QG LGL   P +      D    + PTRV GL S   +++ G+ HSL +  +
Sbjct: 232 VWAWGENAQGQLGLGKPPEAGQPRTPDLTARWSPTRVEGL-SGAVALALGYRHSLVLMED 290

Query: 83  GAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWV 142
           G V A+G N+  QLG G  ES   +  P  V GL +V      A  + S A+  DG++WV
Sbjct: 291 GTVRAFGDNSTGQLGDGTTESPRDY--PVLVGGLTEV--VKVVAGSMHSVALKRDGTVWV 346

Query: 143 WGKSKRGQLGLG-KDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSAD 201
           WG++  G LG G +D T    P++V  +A    V ++ G  H L     G +  WG  A 
Sbjct: 347 WGRNTYGNLGQGTQDSTAHPTPAQVPGVANG--VDIATGRDHILVLHAGGTVSSWGLDAS 404

Query: 202 GRIGNLGKALESSPLDSNIDRSSESDQEI--SSSTIEKAQKL--------------VSEG 245
           G++G  G+A+     ++ +   +  D     ++  +  AQ+               +  G
Sbjct: 405 GQLG-FGEAIPGEQSNAPVQVKNLVDARFVFANGNMSYAQRADGTLLSWGQNFNGQLGNG 463

Query: 246 MEKEKYMPIIWEPFLVEGVE-VVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGRE 299
            + +  +P+       EG++ ++ ++ G  H +   R+G L + G +  G LGRE
Sbjct: 464 SKTDTNVPVP----AAEGLKGLLTLSPGATHVVAFHRDGSLFTWGWSFSGSLGRE 514


>gi|327261091|ref|XP_003215365.1| PREDICTED: RCC1 and BTB domain-containing protein 1-like [Anolis
           carolinensis]
          Length = 530

 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 58/155 (37%), Positives = 94/155 (60%), Gaps = 5/155 (3%)

Query: 62  LPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNV 121
           L   V  V+ G +HSLA++++G V+AWG NN  Q+G G+  ++ T   P++V    Q  +
Sbjct: 125 LIKKVIEVACGSHHSLALSSDGDVYAWGYNNCGQVGSGSTANQPT---PRKVSNCLQTKI 181

Query: 122 CAAFASGVVSS-AIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFG 180
             + A G  SS AI D+G ++ WG +  GQLGLG +  + + P RV AL G  I++++ G
Sbjct: 182 VVSIACGQTSSVAIVDNGEVYGWGYNGNGQLGLGNNGNQ-LTPCRVAALQGVCIMQIACG 240

Query: 181 WGHALAQTEDGKLFGWGYSADGRIGNLGKALESSP 215
           + H LA T++G ++ WG +  G++G   K+ + SP
Sbjct: 241 YAHTLALTDEGLMYSWGANTYGQLGTGNKSNQLSP 275



 Score = 81.6 bits (200), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 68/252 (26%), Positives = 120/252 (47%), Gaps = 23/252 (9%)

Query: 76  SLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNV-CAAFASGVVSSAI 134
           ++ +T+N  V+ +G N    LG G  +S      PK++E L    +   ++ SG      
Sbjct: 33  AIYITHNDEVFVFGLNCSNCLGTGDNQSTIV---PKKLESLSGKRIRSLSYGSGPHVVLS 89

Query: 135 GDDGSLWVWGKSKRGQLGLGKDITEAIVPSRV-EALAGEKIVKVSFGWGHALAQTEDGKL 193
            +DG ++ WG +   QLG G    + + P +V   L  +K+++V+ G  H+LA + DG +
Sbjct: 90  TEDGEVYAWGHNGYSQLGNGT-TNQGVTPIQVCTNLLIKKVIEVACGSHHSLALSSDGDV 148

Query: 194 FGWGYSADGRIGNLGKALESSP------LDSNIDRSSESDQEISSSTIEKAQKL------ 241
           + WGY+  G++G+   A + +P      L + I  S    Q  S + ++  +        
Sbjct: 149 YAWGYNNCGQVGSGSTANQPTPRKVSNCLQTKIVVSIACGQTSSVAIVDNGEVYGWGYNG 208

Query: 242 ---VSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGR 298
              +  G    +  P       ++GV ++ IACG+ H+L L   G++ S G+N YGQLG 
Sbjct: 209 NGQLGLGNNGNQLTPC--RVAALQGVCIMQIACGYAHTLALTDEGLMYSWGANTYGQLGT 266

Query: 299 EKQDMGMFPVDI 310
             +   + P  I
Sbjct: 267 GNKSNQLSPGQI 278



 Score = 60.8 bits (146), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 66/246 (26%), Positives = 107/246 (43%), Gaps = 59/246 (23%)

Query: 134 IGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWG-HALAQTEDGK 192
           I  +  ++V+G +    LG G D    IVP ++E+L+G++I  +S+G G H +  TEDG+
Sbjct: 36  ITHNDEVFVFGLNCSNCLGTG-DNQSTIVPKKLESLSGKRIRSLSYGSGPHVVLSTEDGE 94

Query: 193 LFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYM 252
           ++ WG++   ++GN                                      G   +   
Sbjct: 95  VYAWGHNGYSQLGN--------------------------------------GTTNQGVT 116

Query: 253 PI-IWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDIN 311
           PI +    L++  +V+++ACG  HSL L  +G + + G N  GQ+G         P  ++
Sbjct: 117 PIQVCTNLLIK--KVIEVACGSHHSLALSSDGDVYAWGYNNCGQVGSGSTANQPTPRKVS 174

Query: 312 FH-----PVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQ--LGRMGPDNVPLV 364
                   VSI+ G   S+AI  V +  V G       WG+N + Q  LG  G    P  
Sbjct: 175 NCLQTKIVVSIACGQTSSVAI--VDNGEVYG-------WGYNGNGQLGLGNNGNQLTPCR 225

Query: 365 VEGLEG 370
           V  L+G
Sbjct: 226 VAALQG 231


>gi|345325115|ref|XP_001514077.2| PREDICTED: RCC1 and BTB domain-containing protein 2
           [Ornithorhynchus anatinus]
          Length = 721

 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 62/188 (32%), Positives = 100/188 (53%), Gaps = 9/188 (4%)

Query: 66  VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAF 125
           V  V+ G +HSL +T++G V+AWG NN  Q+G G   S A    P+RV    Q  +    
Sbjct: 324 VVEVACGSHHSLVLTSDGEVYAWGYNNSGQVGSG---STANQPIPRRVTSCLQNKIATNI 380

Query: 126 ASG-VVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHA 184
           A G + S A+ + G ++VWG +  GQLGLG    +   P R+ AL G ++ +V+ G+ H 
Sbjct: 381 ACGQMCSMAVVESGEVYVWGYNGNGQLGLGSSGNQP-TPCRIAALQGIRVQRVTCGYAHT 439

Query: 185 LAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSE 244
           L  T++G+L+ WG ++ G++G   K+ +S P+   +    E D+ I  +    A    ++
Sbjct: 440 LVLTDEGQLYAWGANSYGQLGTGNKSNQSYPIPVPV----EKDRIIEIAACHSAHTSAAK 495

Query: 245 GMEKEKYM 252
                 YM
Sbjct: 496 TQSGHVYM 503



 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 78/292 (26%), Positives = 132/292 (45%), Gaps = 31/292 (10%)

Query: 77  LAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNV-CAAFASG---VVSS 132
           L  T N  V+  G N    LG G +++     +P+R++ L    + C ++ SG   VV++
Sbjct: 229 LYATENDEVFVLGTNCSGCLGTGDVQNTI---EPRRIDSLCGKKITCLSYGSGPHVVVAT 285

Query: 133 AIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEA-LAGEKIVKVSFGWGHALAQTEDG 191
           A   +G ++ WG +   QLG G      ++P  V   L  +K+V+V+ G  H+L  T DG
Sbjct: 286 A---EGEVYTWGHNAYSQLGNGT-TNHGLIPCHVSTNLVNKKVVEVACGSHHSLVLTSDG 341

Query: 192 KLFGWGYSADGRIGNLGKALESSP------LDSNIDRSSESDQEISSSTIEKAQKLV--- 242
           +++ WGY+  G++G+   A +  P      L + I  +    Q  S + +E  +  V   
Sbjct: 342 EVYAWGYNNSGQVGSGSTANQPIPRRVTSCLQNKIATNIACGQMCSMAVVESGEVYVWGY 401

Query: 243 ----SEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGR 298
                 G+      P       ++G+ V  + CG+ H+LVL   G L + G+N YGQLG 
Sbjct: 402 NGNGQLGLGSSGNQPTPCRIAALQGIRVQRVTCGYAHTLVLTDEGQLYAWGANSYGQLGT 461

Query: 299 EKQDMGMFPVDINFHPVSISSGLGHSLAICEVRSSNVTGGARG-IVSWGWNR 349
             +    +P+     PV +       +A C    ++      G +  WG  R
Sbjct: 462 GNKSNQSYPI-----PVPVEKDRIIEIAACHSAHTSAAKTQSGHVYMWGQCR 508



 Score = 62.4 bits (150), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 67/267 (25%), Positives = 114/267 (42%), Gaps = 55/267 (20%)

Query: 110 PKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEAL 169
           P+ ++ + Q  V  +  + V+ +   D+  ++V G +  G LG G D+   I P R+++L
Sbjct: 209 PEELKLIRQACVFGSAGNEVLYATENDE--VFVLGTNCSGCLGTG-DVQNTIEPRRIDSL 265

Query: 170 AGEKIVKVSFGWG-HALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQ 228
            G+KI  +S+G G H +  T +G+++ WG++A  ++GN                      
Sbjct: 266 CGKKITCLSYGSGPHVVVATAEGEVYTWGHNAYSQLGN---------------------- 303

Query: 229 EISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSC 288
                           G      +P      LV   +VV++ACG  HSLVL  +G + + 
Sbjct: 304 ----------------GTTNHGLIPCHVSTNLVNK-KVVEVACGSHHSLVLTSDGEVYAW 346

Query: 289 GSNVYGQLGREKQDMGMFPVDINFHPVSISSGLGHSLAI---CEVRSSNVTGGARGIVSW 345
           G N  GQ+G         P+     P  ++S L + +A    C    S     +  +  W
Sbjct: 347 GYNNSGQVG--SGSTANQPI-----PRRVTSCLQNKIATNIACGQMCSMAVVESGEVYVW 399

Query: 346 GWNRSSQ--LGRMGPDNVPLVVEGLEG 370
           G+N + Q  LG  G    P  +  L+G
Sbjct: 400 GYNGNGQLGLGSSGNQPTPCRIAALQG 426


>gi|432889733|ref|XP_004075335.1| PREDICTED: RCC1 and BTB domain-containing protein 2-like [Oryzias
           latipes]
          Length = 527

 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 57/158 (36%), Positives = 94/158 (59%), Gaps = 5/158 (3%)

Query: 66  VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAF 125
           VT V+ G +H++A+T +G V+AWG NN  Q+G G+  ++ T   P+RV    Q  V    
Sbjct: 130 VTEVACGSHHTIALTADGEVFAWGYNNSGQVGSGSTANQPT---PRRVSSCLQSKVVVNV 186

Query: 126 ASG-VVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHA 184
             G + S A+ D+G ++ WG +  GQLGLG +  +   P R+ AL G  +V+V+ G+ H 
Sbjct: 187 GCGQLCSMAVLDNGEIYGWGYNCNGQLGLGNNGNQQ-TPCRIAALQGVNVVQVACGYAHT 245

Query: 185 LAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDR 222
           LA T++G ++ WG ++ G++G   K+ ++ P   N D+
Sbjct: 246 LALTDEGFVYAWGANSYGQLGTGNKSNQALPTLINTDK 283



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 79/288 (27%), Positives = 120/288 (41%), Gaps = 55/288 (19%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLP-SDVTSVSAGH-YHSLAVTNNGAVW 86
           V + G    G LGL     G      EP R+  L    + S+S G   H +  T +G V+
Sbjct: 43  VFALGTNCSGCLGL-----GDLQSTIEPRRIDVLCGKKIVSLSYGTGPHVVIATADGEVF 97

Query: 87  AWGRNNEVQLGRGALESRATWNDPKRVE-GLDQVNVCAAFASGVVSSAIGDDGSLWVWGK 145
           AWG N   QLG G      T   P  V   L    V         + A+  DG ++ WG 
Sbjct: 98  AWGHNGYSQLGNGTTNHGLT---PALVSTNLLGKRVTEVACGSHHTIALTADGEVFAWGY 154

Query: 146 SKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGH--ALAQTEDGKLFGWGYSADGR 203
           +  GQ+G G    +   P RV +    K+V V+ G G   ++A  ++G+++GWGY+ +G+
Sbjct: 155 NNSGQVGSGSTANQP-TPRRVSSCLQSKVV-VNVGCGQLCSMAVLDNGEIYGWGYNCNGQ 212

Query: 204 IGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEG 263
           +G      + +P              I++                            ++G
Sbjct: 213 LGLGNNGNQQTPC------------RIAA----------------------------LQG 232

Query: 264 VEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDIN 311
           V VV +ACG+ H+L L   G + + G+N YGQLG   +     P  IN
Sbjct: 233 VNVVQVACGYAHTLALTDEGFVYAWGANSYGQLGTGNKSNQALPTLIN 280



 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 63/267 (23%), Positives = 110/267 (41%), Gaps = 55/267 (20%)

Query: 110 PKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEAL 169
           P+ +  + Q  V  + A+  +   + D+  ++  G +  G LGLG D+   I P R++ L
Sbjct: 15  PEELRLIRQACVFGSAANEALYVTVNDE--VFALGTNCSGCLGLG-DLQSTIEPRRIDVL 71

Query: 170 AGEKIVKVSFGWG-HALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQ 228
            G+KIV +S+G G H +  T DG++F WG++   ++GN                      
Sbjct: 72  CGKKIVSLSYGTGPHVVIATADGEVFAWGHNGYSQLGN---------------------- 109

Query: 229 EISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSC 288
                           G       P +    L+ G  V ++ACG  H++ L  +G + + 
Sbjct: 110 ----------------GTTNHGLTPALVSTNLL-GKRVTEVACGSHHTIALTADGEVFAW 152

Query: 289 GSNVYGQLGREKQDMGMFPVDINF---HPVSISSGLGHSLAICEVRSSNVTGGARGIVSW 345
           G N  GQ+G         P  ++      V ++ G G   ++  + +  + G       W
Sbjct: 153 GYNNSGQVGSGSTANQPTPRRVSSCLQSKVVVNVGCGQLCSMAVLDNGEIYG-------W 205

Query: 346 GWNRSSQ--LGRMGPDNVPLVVEGLEG 370
           G+N + Q  LG  G    P  +  L+G
Sbjct: 206 GYNCNGQLGLGNNGNQQTPCRIAALQG 232


>gi|300794901|ref|NP_001179920.1| RCC1 and BTB domain-containing protein 2 [Bos taurus]
 gi|296481887|tpg|DAA24002.1| TPA: regulator of chromosome condensation (RCC1) and BTB (POZ)
           domain containing protein 2 [Bos taurus]
          Length = 527

 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 59/152 (38%), Positives = 89/152 (58%), Gaps = 5/152 (3%)

Query: 65  DVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAA 124
            V  V+ G YHSL +T++G V+AWG NN  Q+G G   S A    P+RV G  Q  V   
Sbjct: 129 QVIEVACGSYHSLVLTSDGEVFAWGYNNSGQVGSG---STANQPIPRRVTGCLQSKVVVN 185

Query: 125 FASG-VVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGH 183
            A G + S A+ + G ++VWG +  GQLGLG    +   P RV AL G ++ +V+ G+ H
Sbjct: 186 IACGQMCSMAVVNTGEVFVWGYNGNGQLGLGSSGNQP-TPCRVAALQGIRVQRVACGYAH 244

Query: 184 ALAQTEDGKLFGWGYSADGRIGNLGKALESSP 215
            L  T++G+++ WG ++ G++G   K+ +S P
Sbjct: 245 TLVLTDEGQVYAWGANSYGQLGTGNKSNQSYP 276



 Score = 85.5 bits (210), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 65/249 (26%), Positives = 115/249 (46%), Gaps = 19/249 (7%)

Query: 77  LAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNV-CAAFASGVVSSAIG 135
           L  T N  ++  G N    LG G ++S     +P+R++ L    + C ++ SG       
Sbjct: 35  LYTTVNDEIFVLGTNCCGCLGLGDVQSTI---EPRRLDSLSGKKIACLSYGSGPHIVLAT 91

Query: 136 DDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEA-LAGEKIVKVSFGWGHALAQTEDGKLF 194
            +G ++ WG +   QLG G      +VP  +   L+ +++++V+ G  H+L  T DG++F
Sbjct: 92  TEGEVFTWGHNAYSQLGNGT-TNAGLVPYHISTNLSNKQVIEVACGSYHSLVLTSDGEVF 150

Query: 195 GWGYSADGRIGNLGKALESSP------LDSNIDRSSESDQEISSSTIEKAQKLV------ 242
            WGY+  G++G+   A +  P      L S +  +    Q  S + +   +  V      
Sbjct: 151 AWGYNNSGQVGSGSTANQPIPRRVTGCLQSKVVVNIACGQMCSMAVVNTGEVFVWGYNGN 210

Query: 243 -SEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQ 301
              G+      P       ++G+ V  +ACG+ H+LVL   G + + G+N YGQLG   +
Sbjct: 211 GQLGLGSSGNQPTPCRVAALQGIRVQRVACGYAHTLVLTDEGQVYAWGANSYGQLGTGNK 270

Query: 302 DMGMFPVDI 310
               +P  +
Sbjct: 271 SNQSYPTPV 279



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 64/256 (25%), Positives = 113/256 (44%), Gaps = 49/256 (19%)

Query: 118 QVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKV 177
           Q  V  + ++ ++ + + D+  ++V G +  G LGLG D+   I P R+++L+G+KI  +
Sbjct: 23  QACVFGSASNELLYTTVNDE--IFVLGTNCCGCLGLG-DVQSTIEPRRLDSLSGKKIACL 79

Query: 178 SFGWG-HALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIE 236
           S+G G H +  T +G++F WG++A  ++GN        P   + + S++           
Sbjct: 80  SYGSGPHIVLATTEGEVFTWGHNAYSQLGNGTTNAGLVPYHISTNLSNK----------- 128

Query: 237 KAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQL 296
                                       +V+++ACG  HSLVL  +G + + G N  GQ+
Sbjct: 129 ----------------------------QVIEVACGSYHSLVLTSDGEVFAWGYNNSGQV 160

Query: 297 GREKQDMGMFPVDINFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQ--LG 354
           G         P  +      + S +  ++A  ++ S  V       V WG+N + Q  LG
Sbjct: 161 GSGSTANQPIPRRVT---GCLQSKVVVNIACGQMCSMAVVNTGEVFV-WGYNGNGQLGLG 216

Query: 355 RMGPDNVPLVVEGLEG 370
             G    P  V  L+G
Sbjct: 217 SSGNQPTPCRVAALQG 232


>gi|301755558|ref|XP_002913646.1| PREDICTED: LOW QUALITY PROTEIN: probable E3 ubiquitin-protein
           ligase HERC6-like [Ailuropoda melanoleuca]
          Length = 1189

 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 83/268 (30%), Positives = 121/268 (45%), Gaps = 45/268 (16%)

Query: 31  SFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPS-DVTSVSAGHYHSLAVTNNGAVWAWG 89
           S GD SQG LG      GV  D + P R+  L +  V  VS G  HSLAV   G V+AWG
Sbjct: 46  SCGDNSQGQLGR----KGVQRDEH-PKRIRTLDNLRVDLVSCGKEHSLAVCYKGRVFAWG 100

Query: 90  RNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRG 149
             +E QLG G  E +     P +++ L  + +         S A+ + G ++ WG +  G
Sbjct: 101 AGSEGQLGVG--EFKEINLIPTKIKTLTGIKIIQVSCGHYHSLALSEGGQVFSWGSNSHG 158

Query: 150 QLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGK 209
           QLGLGK+      P RV +L G  + +V+ G  H+ A +  G  FGWG       G L  
Sbjct: 159 QLGLGKECPSQASPQRVRSLDGIPLTQVAAGGAHSFALSLSGASFGWG---SNNAGQLAL 215

Query: 210 ALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDI 269
              + P+ S+  RS  +                                  ++ + V+ I
Sbjct: 216 RQNNVPVQSHKPRSIGA----------------------------------LKNLGVIYI 241

Query: 270 ACGFDHSLVLGRNGVLLSCGSNVYGQLG 297
           +CG++H+ VL + G + + G N YGQLG
Sbjct: 242 SCGYEHTAVLTQTGKVFTFGGNSYGQLG 269



 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 85/311 (27%), Positives = 140/311 (45%), Gaps = 50/311 (16%)

Query: 64  SDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCA 123
           +++   ++G  HSL + +NG + + G N++ QLGR  ++       PKR+  LD + V  
Sbjct: 23  AELRQAASGERHSLLLLSNGELHSCGDNSQGQLGRKGVQRD---EHPKRIRTLDNLRVDL 79

Query: 124 AFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGH 183
                  S A+   G ++ WG    GQLG+G+     ++P++++ L G KI++VS G  H
Sbjct: 80  VSCGKEHSLAVCYKGRVFAWGAGSEGQLGVGEFKEINLIPTKIKTLTGIKIIQVSCGHYH 139

Query: 184 ALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVS 243
           +LA +E G++F WG ++ G++G LGK             S  S Q + S           
Sbjct: 140 SLALSEGGQVFSWGSNSHGQLG-LGKECP----------SQASPQRVRS----------- 177

Query: 244 EGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDM 303
                            ++G+ +  +A G  HS  L  +G     GSN  GQL   + ++
Sbjct: 178 -----------------LDGIPLTQVAAGGAHSFALSLSGASFGWGSNNAGQLALRQNNV 220

Query: 304 GMFPVDINFHPVSISS--GLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGR--MGPD 359
              PV  +  P SI +   LG     C    + V      + ++G N   QLG       
Sbjct: 221 ---PVQ-SHKPRSIGALKNLGVIYISCGYEHTAVLTQTGKVFTFGGNSYGQLGHSPTAEK 276

Query: 360 NVPLVVEGLEG 370
             P +VEG++G
Sbjct: 277 EGPQLVEGIDG 287



 Score = 45.8 bits (107), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 36/97 (37%), Positives = 44/97 (45%), Gaps = 15/97 (15%)

Query: 263 GVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDI----NFHPVSIS 318
           G E+   A G  HSL+L  NG L SCG N  GQLGR+       P  I    N     +S
Sbjct: 22  GAELRQAASGERHSLLLLSNGELHSCGDNSQGQLGRKGVQRDEHPKRIRTLDNLRVDLVS 81

Query: 319 SGLGHSLAICEVRSSNVTGGARG-IVSWGWNRSSQLG 354
            G  HSLA+C           +G + +WG     QLG
Sbjct: 82  CGKEHSLAVC----------YKGRVFAWGAGSEGQLG 108


>gi|281207647|gb|EFA81827.1| putative protein serine/threonine kinase [Polysphondylium pallidum
           PN500]
          Length = 1626

 Score =  103 bits (257), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 77/233 (33%), Positives = 116/233 (49%), Gaps = 14/233 (6%)

Query: 17  SRIFMRSASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVT-SVSAGHYH 75
           SR  +  +SG A+ ++G G  G LG      G   + Y+PT V  L   V  +V+ G  H
Sbjct: 247 SRAAVIDSSG-ALFTWGRGDHGRLG-----HGDTENRYQPTLVSSLYGHVVVAVALGGGH 300

Query: 76  SLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEG-LDQVNVCAAFASGVVSSAI 134
           SLA+T  G +++WGR    QLG G+ +S+     PK+++  +D   +    A G  S A 
Sbjct: 301 SLALTKAGELFSWGRGENGQLGHGSYQSQQL--APKQLQFFVDMPKIIGISAGGYHSVAQ 358

Query: 135 GDDGSLWVWGKSKRGQLGLGKDITEAI-VPSRVEALAGEKIVKVSFGWGHALAQTEDGKL 193
            DDGS++ WG S  G LG G     AI +P R+    G +   +S G+ H +A T D  +
Sbjct: 359 LDDGSVYAWGMSDYGILGTGDSDDGAINIPQRILMPRGIRFKTISCGFQHTVALTSDNTI 418

Query: 194 FGWGYSADGRIGNLGKALESSPLDSNIDRSSE---SDQEISSSTIEKAQKLVS 243
           + WG    GR+G   +  + +P+  NI        S  EIS+  I K   +V+
Sbjct: 419 YSWGCGLGGRLGTFNEKNQCAPIACNIPNYQPVVFSAGEISTIVIGKKNTVVA 471



 Score = 89.4 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 93/362 (25%), Positives = 152/362 (41%), Gaps = 46/362 (12%)

Query: 12  VNVLTSRIFMRSASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPS-DVTSVS 70
           VN   + I M S SG  + ++G+G  G LG      G       P +V  L +  +  V 
Sbjct: 134 VNAGAAHIAMISQSGK-LFTWGEGQYGRLG-----HGDEESISTPKQVVALANIPMKYVF 187

Query: 71  AGHYHSLAV--TNNGAVWAWGRNNEVQLGRG-------ALESRATWNDPKRVEGLDQVNV 121
            G   ++A+  T    ++ WG N   QLGRG        L         KR+  LD    
Sbjct: 188 CGGRSTIALSHTAGSGLYTWGNNEFGQLGRGDCGDDFTCLPESVAVPGAKRLVALD---- 243

Query: 122 CAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGW 181
               A    ++ I   G+L+ WG+   G+LG G D      P+ V +L G  +V V+ G 
Sbjct: 244 ----AGASRAAVIDSSGALFTWGRGDHGRLGHG-DTENRYQPTLVSSLYGHVVVAVALGG 298

Query: 182 GHALAQTEDGKLFGWGYSADGRIGN---LGKALESSPLDSNIDRSS---------ESDQE 229
           GH+LA T+ G+LF WG   +G++G+     + L    L   +D             S  +
Sbjct: 299 GHSLALTKAGELFSWGRGENGQLGHGSYQSQQLAPKQLQFFVDMPKIIGISAGGYHSVAQ 358

Query: 230 ISSSTI----EKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVL 285
           +   ++         ++  G   +  + I     +  G+    I+CGF H++ L  +  +
Sbjct: 359 LDDGSVYAWGMSDYGILGTGDSDDGAINIPQRILMPRGIRFKTISCGFQHTVALTSDNTI 418

Query: 286 LSCGSNVYGQLG--REKQDMGMFPVDI-NFHPVSISSGLGHSLAICEVRSSNVTGGARGI 342
            S G  + G+LG   EK        +I N+ PV  S+G   ++ I   + + V   + G+
Sbjct: 419 YSWGCGLGGRLGTFNEKNQCAPIACNIPNYQPVVFSAGEISTIVIG--KKNTVVATSSGL 476

Query: 343 VS 344
            S
Sbjct: 477 TS 478


>gi|170581639|ref|XP_001895769.1| hypothetical protein [Brugia malayi]
 gi|158597158|gb|EDP35375.1| conserved hypothetical protein [Brugia malayi]
          Length = 916

 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 98/353 (27%), Positives = 153/353 (43%), Gaps = 60/353 (16%)

Query: 32  FGDGSQGALGL-PTSLTGVGGDAYEPTRVPGLPS-----DVTSVSAGHYHSLAVTNNGAV 85
           FG    G LG  P S+         P  V G P+      V S+++G  H+L ++++G V
Sbjct: 9   FGCAGDGQLGFRPDSVESDSQMMIVPRLVYGAPTGQNGVTVKSIASGERHTLFLSDDGKV 68

Query: 86  WAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGK 145
           W+ G N   +LGRG +   +    P  +     V++    A    S A+ DDG L+ WG 
Sbjct: 69  WSCGSNYNGELGRGGVREGSYTIYPVHISS--TVSIIQISAGRSHSMAVSDDGRLFAWGS 126

Query: 146 SKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIG 205
           +  GQL +  DI  +  P RV +L   + V+V+ G  H ++    G++F WG  +DGRI 
Sbjct: 127 NSHGQLAMSGDILASDTPKRVPSLP--ETVQVACGASHTVSLNGGGRVFIWGQQSDGRI- 183

Query: 206 NLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVE 265
                           R S ++ EI  S I   Q +V+              P  V  + 
Sbjct: 184 ----------------RHSPAEVEIFIS-IPIVQNVVN--------------PCAVPNIN 212

Query: 266 -VVDIACGFDHSLVLGRNGVLLSCGSNVYGQLG-----REKQDMGMFPVDINFHPVSISS 319
            VV + CG  HS+ L   G + SCGS+ +GQLG     R +  M      +  H   I+ 
Sbjct: 213 SVVAVECGDSHSIALTHEGRVFSCGSDSFGQLGCGQPNRSQNCMRGITEMLGSHVTRIAC 272

Query: 320 GLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPDN--VPLVVEGLEG 370
           G  H++ +   +          + ++G N + QLG     N   P V++ +E 
Sbjct: 273 GRCHTIVVANGK----------MHTFGLNSNGQLGHGNTRNQITPRVIDSVEN 315



 Score = 49.3 bits (116), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 45/187 (24%), Positives = 87/187 (46%), Gaps = 18/187 (9%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAW 88
           + ++G  S G L +   +  +  D   P RVP LP  V  V+ G  H++++   G V+ W
Sbjct: 121 LFAWGSNSHGQLAMSGDI--LASDT--PKRVPSLPETV-QVACGASHTVSLNGGGRVFIW 175

Query: 89  GRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAA-FASGVVSSAIGD--------DGS 139
           G+ ++ ++     E     + P  V+ +  VN CA    + VV+   GD        +G 
Sbjct: 176 GQQSDGRIRHSPAEVEIFISIPI-VQNV--VNPCAVPNINSVVAVECGDSHSIALTHEGR 232

Query: 140 LWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYS 199
           ++  G    GQLG G+          +  + G  + +++ G  H +    +GK+  +G +
Sbjct: 233 VFSCGSDSFGQLGCGQPNRSQNCMRGITEMLGSHVTRIACGRCHTIV-VANGKMHTFGLN 291

Query: 200 ADGRIGN 206
           ++G++G+
Sbjct: 292 SNGQLGH 298



 Score = 40.4 bits (93), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 35/131 (26%), Positives = 63/131 (48%), Gaps = 7/131 (5%)

Query: 56  PTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEG 115
           P  VP + S V +V  G  HS+A+T+ G V++ G ++  QLG G  +   + N  + +  
Sbjct: 205 PCAVPNINS-VVAVECGDSHSIALTHEGRVFSCGSDSFGQLGCG--QPNRSQNCMRGITE 261

Query: 116 LDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIV 175
           +   +V    A G   + +  +G +  +G +  GQLG G +    I P  ++++  E + 
Sbjct: 262 MLGSHV-TRIACGRCHTIVVANGKMHTFGLNSNGQLGHG-NTRNQITPRVIDSV--ENVA 317

Query: 176 KVSFGWGHALA 186
            V  GW  +  
Sbjct: 318 SVFAGWDQSFC 328


>gi|114595107|ref|XP_001160807.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC6 isoform 1
           [Pan troglodytes]
          Length = 984

 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 85/270 (31%), Positives = 128/270 (47%), Gaps = 45/270 (16%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTR-VPGLPSDVTSVSAGHYHSLAVTNNGAVWA 87
           V+S GD S+G LG         G+  EP + +  L  D+  VS G  HSLAV + G V+A
Sbjct: 44  VLSCGDNSRGQLG---RRGAQRGELPEPIQALETLTVDL--VSCGKEHSLAVCHKGRVFA 98

Query: 88  WGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSK 147
           WG  +E QLG G  E +     PK++  L+ + +         S A+  D  ++ WGK+ 
Sbjct: 99  WGAGSEGQLGIG--EFKEISFTPKKITTLNGIKIIQVSCGHYHSLALSKDSQVFSWGKNS 156

Query: 148 RGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNL 207
            GQLGLGK+      P RV +L G  + +V+ G  H+ A +  G  FGWG ++ G++   
Sbjct: 157 HGQLGLGKEFPSQASPQRVRSLEGIPLAQVAAGGAHSFALSLCGTSFGWGSNSSGQLALS 216

Query: 208 GKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVV 267
           G+ +   P+ SN                    K +S G               ++ + VV
Sbjct: 217 GRNV---PVQSN--------------------KPLSVGA--------------LKNLGVV 239

Query: 268 DIACGFDHSLVLGRNGVLLSCGSNVYGQLG 297
            I+CG  H+ VL ++G + + G N  GQLG
Sbjct: 240 YISCGDAHTAVLTQDGKVFTFGDNRSGQLG 269



 Score = 87.0 bits (214), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 88/318 (27%), Positives = 140/318 (44%), Gaps = 51/318 (16%)

Query: 58  RVPGLP-SDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGL 116
           R  G P +++   ++G  HSL +  N  V + G N+  QLGR   + R    +P  ++ L
Sbjct: 16  RTAGSPGAELLQAASGERHSLLLLTNHRVLSCGDNSRGQLGRRGAQ-RGELPEP--IQAL 72

Query: 117 DQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVK 176
           + + V         S A+   G ++ WG    GQLG+G+    +  P ++  L G KI++
Sbjct: 73  ETLTVDLVSCGKEHSLAVCHKGRVFAWGAGSEGQLGIGEFKEISFTPKKITTLNGIKIIQ 132

Query: 177 VSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIE 236
           VS G  H+LA ++D ++F WG ++ G++G LGK             S  S Q + S    
Sbjct: 133 VSCGHYHSLALSKDSQVFSWGKNSHGQLG-LGKEFP----------SQASPQRVRS---- 177

Query: 237 KAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQL 296
                                   +EG+ +  +A G  HS  L   G     GSN  GQL
Sbjct: 178 ------------------------LEGIPLAQVAAGGAHSFALSLCGTSFGWGSNSSGQL 213

Query: 297 GREKQDMGMFPVDINFHPVSISS--GLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLG 354
               +++   PV  N  P+S+ +   LG     C    + V      + ++G NRS QLG
Sbjct: 214 ALSGRNV---PVQSN-KPLSVGALKNLGVVYISCGDAHTAVLTQDGKVFTFGDNRSGQLG 269

Query: 355 RM-GPDNV-PLVVEGLEG 370
               P+   P +VE ++G
Sbjct: 270 YSPTPEKRGPQLVERIDG 287



 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 54/204 (26%), Positives = 82/204 (40%), Gaps = 16/204 (7%)

Query: 24  ASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRV---PGLPSDVTSVSAGHYHSLAVT 80
           +  + V S+G  S G LGL             P RV    G+P  +  V+AG  HS A++
Sbjct: 144 SKDSQVFSWGKNSHGQLGLGKEFPSQAS----PQRVRSLEGIP--LAQVAAGGAHSFALS 197

Query: 81  NNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSL 140
             G  + WG N+  QL           N P  V  L  + V         ++ +  DG +
Sbjct: 198 LCGTSFGWGSNSSGQLALSGRNVPVQSNKPLSVGALKNLGVVYISCGDAHTAVLTQDGKV 257

Query: 141 WVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTE-DGKLFGWGYS 199
           + +G ++ GQLG      E   P  VE + G  + ++  G  H LA     G++  +G+ 
Sbjct: 258 FTFGDNRSGQLGYS-PTPEKRGPQLVERIDG-LVSQIDCGSYHTLAYVHTTGQVVSFGHG 315

Query: 200 ADGRIGNLGKALESSPLDSNIDRS 223
                 +  K   S  L  N D S
Sbjct: 316 P----SDTSKPTHSEALTENFDIS 335


>gi|310818131|ref|YP_003950489.1| regulator of chromosome condensation [Stigmatella aurantiaca
           DW4/3-1]
 gi|309391203|gb|ADO68662.1| Regulator of chromosome condensation [Stigmatella aurantiaca
           DW4/3-1]
          Length = 512

 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 97/299 (32%), Positives = 131/299 (43%), Gaps = 72/299 (24%)

Query: 71  AGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVV 130
           AG  H+  V   GA++ WGRNN  QLG GA E  A    PK V G++ V   A   +   
Sbjct: 148 AGGSHT-GVVRQGALYLWGRNNRGQLGLGA-EVTADQRVPKPVPGMEGVAAVALNQNH-- 203

Query: 131 SSAIGDDGSLWVWGKSKRGQLGLGK----------DITEAIVPSRVEALAGEKIVKVSFG 180
           S A+ +DG++W WG++ +GQLGLGK          D+T    P+RVE L+G   V ++ G
Sbjct: 204 SMALKEDGTVWAWGENAQGQLGLGKPPEAGQPRTPDLTARWSPTRVEGLSG--AVALALG 261

Query: 181 WGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQK 240
           + H+L   EDG +  +G   D   G LG     SP D                       
Sbjct: 262 YRHSLVLMEDGTVRAFG---DNSTGQLGDGTTESPRD----------------------- 295

Query: 241 LVSEGMEKEKYMPIIWEPFLVEGV-EVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGRE 299
                            P LV G+ EVV +  G  HS+ L R+G +   G N YG LG+ 
Sbjct: 296 ----------------YPVLVGGLTEVVKVVAGSMHSVALKRDGTVWVWGRNTYGNLGQG 339

Query: 300 KQDMGMFPVDINF----HPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLG 354
            QD    P         + V I++G  H L +         GG   + SWG + S QLG
Sbjct: 340 TQDSTAHPTPAQVPGVANGVDIATGRDHILVLH-------AGGT--VSSWGLDASGQLG 389



 Score = 85.5 bits (210), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 107/364 (29%), Positives = 152/364 (41%), Gaps = 83/364 (22%)

Query: 28  AVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWA 87
           A+  +G  ++G LGL   +T    D   P  VPG+   V +V+    HS+A+  +G VWA
Sbjct: 160 ALYLWGRNNRGQLGLGAEVTA---DQRVPKPVPGM-EGVAAVALNQNHSMALKEDGTVWA 215

Query: 88  WGRNNEVQLGRG----ALESR-----ATWNDPKRVEGLDQVNVCAAFASGVVSSAIG--- 135
           WG N + QLG G    A + R     A W+ P RVEGL          SG V+ A+G   
Sbjct: 216 WGENAQGQLGLGKPPEAGQPRTPDLTARWS-PTRVEGL----------SGAVALALGYRH 264

Query: 136 -----DDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTED 190
                +DG++  +G +  GQLG G   +    P  V  L   ++VKV  G  H++A   D
Sbjct: 265 SLVLMEDGTVRAFGDNSTGQLGDGTTESPRDYPVLVGGLT--EVVKVVAGSMHSVALKRD 322

Query: 191 GKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEK 250
           G ++ WG +  G +G                                      +G +   
Sbjct: 323 GTVWVWGRNTYGNLG--------------------------------------QGTQDST 344

Query: 251 YMPIIWEPFLVEGVEV-VDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVD 309
             P    P  V GV   VDIA G DH LVL   G + S G +  GQLG  +      P +
Sbjct: 345 AHPT---PAQVPGVANGVDIATGRDHILVLHAGGTVSSWGLDASGQLGFGE----AIPGE 397

Query: 310 INFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGR--MGPDNVPL-VVE 366
            +  PV + + +           S        ++SWG N + QLG       NVP+   E
Sbjct: 398 QSNAPVQVKNLVDARFVFANGNMSYAQRADGTLLSWGQNFNGQLGNGSKTDTNVPVPAAE 457

Query: 367 GLEG 370
           GL+G
Sbjct: 458 GLKG 461



 Score = 81.3 bits (199), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 84/295 (28%), Positives = 140/295 (47%), Gaps = 36/295 (12%)

Query: 29  VVSFGDGSQGALGL---PTSLTGVGGD---AYEPTRVPGLPSDVTSVSAGHYHSLAVTNN 82
           V ++G+ +QG LGL   P +      D    + PTRV GL S   +++ G+ HSL +  +
Sbjct: 213 VWAWGENAQGQLGLGKPPEAGQPRTPDLTARWSPTRVEGL-SGAVALALGYRHSLVLMED 271

Query: 83  GAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWV 142
           G V A+G N+  QLG G  ES   +  P  V GL +V      A  + S A+  DG++WV
Sbjct: 272 GTVRAFGDNSTGQLGDGTTESPRDY--PVLVGGLTEV--VKVVAGSMHSVALKRDGTVWV 327

Query: 143 WGKSKRGQLGLG-KDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSAD 201
           WG++  G LG G +D T    P++V  +A    V ++ G  H L     G +  WG  A 
Sbjct: 328 WGRNTYGNLGQGTQDSTAHPTPAQVPGVA--NGVDIATGRDHILVLHAGGTVSSWGLDAS 385

Query: 202 GRIGNLGKALESSPLDSNIDRSSESDQEI--SSSTIEKAQKL--------------VSEG 245
           G++G  G+A+     ++ +   +  D     ++  +  AQ+               +  G
Sbjct: 386 GQLG-FGEAIPGEQSNAPVQVKNLVDARFVFANGNMSYAQRADGTLLSWGQNFNGQLGNG 444

Query: 246 MEKEKYMPIIWEPFLVEGVE-VVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGRE 299
            + +  +P+       EG++ ++ ++ G  H +   R+G L + G +  G LGRE
Sbjct: 445 SKTDTNVPVP----AAEGLKGLLTLSPGATHVVAFHRDGSLFTWGWSFSGSLGRE 495


>gi|219847607|ref|YP_002462040.1| chromosome condensation regulator RCC1 [Chloroflexus aggregans DSM
           9485]
 gi|219541866|gb|ACL23604.1| regulator of chromosome condensation RCC1 [Chloroflexus aggregans
           DSM 9485]
          Length = 776

 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 96/329 (29%), Positives = 142/329 (43%), Gaps = 24/329 (7%)

Query: 52  DAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPK 111
           D+  P  V GLPS VT+++AG  H+ A+T++G VW WG N   QLG G+  +R+T   P 
Sbjct: 92  DSSTPVAVSGLPSGVTAIAAGGAHTCALTSSGEVWCWGSNFYGQLGDGSYTTRST---PV 148

Query: 112 RVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAG 171
            V GL    V A  A G  + A    G +W WG + RGQLG G   T+   P  V  L  
Sbjct: 149 AVSGLPS-GVTAIAAGGWHTCARTSSGGVWCWGGNYRGQLGDGT-TTDRSTPVAVSGLPS 206

Query: 172 EKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSP-----LDSNIDRSSES 226
           E +  ++ G  H  A+   G+++ WG +  G++G+      S+P     L S +   +  
Sbjct: 207 E-VTAIAAGDAHTCARMSSGEVWCWGGNNYGQLGDGSYTDSSTPVAVSGLPSGVTAIAAG 265

Query: 227 DQEISSSTIEKAQKLVSEGMEKEKYMPIIW---EPFLVEGVE--VVDIACGFDHSLVLGR 281
                + T     +        +    + +    P  V G+   V  IA G  H+  L  
Sbjct: 266 GVHTCALTGSGGVRCWGANYSGQLGNGLTFGRSTPGAVSGLPSGVTAIAAGDYHTCALTG 325

Query: 282 NGVLLSCGSNVYGQLGREKQDMGMFPVDINFHPVSISSGLGHSLAICEVRSSNVTGGARG 341
           +G +   G N  GQLG         PV ++  P  + +        C + SS       G
Sbjct: 326 SGGVWCWGGNYSGQLGDGTTTARSTPVAVSGLPSGVETIAAGDYHTCALMSSG------G 379

Query: 342 IVSWGWNRSSQL--GRMGPDNVPLVVEGL 368
           +  WG N   QL  G     + P+ V GL
Sbjct: 380 VRCWGHNDRGQLGDGTTTARSTPVAVSGL 408



 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 98/330 (29%), Positives = 137/330 (41%), Gaps = 30/330 (9%)

Query: 55  EPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVE 114
            P  V GLPS VT+++AG +H+ A T++G VW WG N   QLG G    R+T   P  V 
Sbjct: 146 TPVAVSGLPSGVTAIAAGGWHTCARTSSGGVWCWGGNYRGQLGDGTTTDRST---PVAVS 202

Query: 115 GLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKI 174
           GL    V A  A    + A    G +W WG +  GQLG G   T++  P  V  L    +
Sbjct: 203 GLPS-EVTAIAAGDAHTCARMSSGEVWCWGGNNYGQLGDGS-YTDSSTPVAVSGLP-SGV 259

Query: 175 VKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSP-----LDSNIDRSSESDQE 229
             ++ G  H  A T  G +  WG +  G++GN      S+P     L S +   +  D  
Sbjct: 260 TAIAAGGVHTCALTGSGGVRCWGANYSGQLGNGLTFGRSTPGAVSGLPSGVTAIAAGDYH 319

Query: 230 ISSSTIEKA--------QKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGR 281
             + T               + +G    +  P+     L  GVE   IA G  H+  L  
Sbjct: 320 TCALTGSGGVWCWGGNYSGQLGDGTTTARSTPVA-VSGLPSGVET--IAAGDYHTCALMS 376

Query: 282 NGVLLSCGSNVYGQLGREKQDMGMFPVDINFHPVSISSGLGHSLAICEVRSSNVTGGARG 341
           +G +   G N  GQLG         PV ++  P  +++     L  C   SS       G
Sbjct: 377 SGGVRCWGHNDRGQLGDGTTTARSTPVAVSGLPSGVTAIAAGRLHTCARTSSG------G 430

Query: 342 IVSWGWNRSSQL--GRMGPDNVPLVVEGLE 369
           +  WG N   QL  G     + P+ V GL 
Sbjct: 431 VWCWGDNSDGQLGDGSFTDSSTPVAVSGLA 460



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 95/333 (28%), Positives = 145/333 (43%), Gaps = 39/333 (11%)

Query: 55  EPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVE 114
            P  V GLPS V +++AG YH+ A+ ++G V  WG N+  QLG G   +R+T   P  V 
Sbjct: 350 TPVAVSGLPSGVETIAAGDYHTCALMSSGGVRCWGHNDRGQLGDGTTTARST---PVAVS 406

Query: 115 GLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKI 174
           GL    V A  A  + + A    G +W WG +  GQLG G   T++  P  V  LA    
Sbjct: 407 GLPS-GVTAIAAGRLHTCARTSSGGVWCWGDNSDGQLGDGS-FTDSSTPVAVSGLASGVE 464

Query: 175 VKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSP-----LDSNIDRSSESDQE 229
              + GW H  A T  G ++ WG +  G++G+       +P     L S +   +     
Sbjct: 465 TIAAGGW-HTCALTGSGGVWCWGRNNSGQLGDGSTIYHITPVAVSGLPSGVTAIAAGGVH 523

Query: 230 ISSSTIEKA--------QKLVSEGMEKEKYMPIIWEPFLVEGVE--VVDIACGFDHSLVL 279
             + T               + +G   ++  P+      V G+   V  IA G  H+  L
Sbjct: 524 TCALTGSGGVWCWGGNFAGQLGDGTTTDRSTPVA-----VSGLPSGVTAIAAGDIHTCAL 578

Query: 280 GRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFHP---VSISSGLGHSLAICEVRSSNVT 336
             +G +   G N +GQLG         PV ++  P    +I++GL ++ A+         
Sbjct: 579 TGSGGVWCWGGNDFGQLGDGTTTNRSTPVAVSGLPSGVTAIAAGLRYTCALT-------- 630

Query: 337 GGARGIVSWGWNRSSQLGR-MGPDNVPLVVEGL 368
            G+ G+  WG+N S QL       + P+ V GL
Sbjct: 631 -GSGGVWCWGYNLSGQLDDGTTSRSTPVAVSGL 662



 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 94/330 (28%), Positives = 139/330 (42%), Gaps = 83/330 (25%)

Query: 55  EPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVE 114
            P  V GLPS VT+++AG YH+ A+T +G VW WG N   QLG G   +R+T   P  V 
Sbjct: 299 TPGAVSGLPSGVTAIAAGDYHTCALTGSGGVWCWGGNYSGQLGDGTTTARST---PVAVS 355

Query: 115 GLDQVNVCAAFASGVVSSAIGD--------DGSLWVWGKSKRGQLGLGKDITEAI----- 161
           GL          SGV + A GD         G +  WG + RGQLG G     +      
Sbjct: 356 GLP---------SGVETIAAGDYHTCALMSSGGVRCWGHNDRGQLGDGTTTARSTPVAVS 406

Query: 162 -VPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNI 220
            +PS V A+A  ++        H  A+T  G ++ WG ++DG++G               
Sbjct: 407 GLPSGVTAIAAGRL--------HTCARTSSGGVWCWGDNSDGQLG--------------- 443

Query: 221 DRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLG 280
                 D   + S+   A   ++ G+E                     IA G  H+  L 
Sbjct: 444 ------DGSFTDSSTPVAVSGLASGVET--------------------IAAGGWHTCALT 477

Query: 281 RNGVLLSCGSNVYGQLGREKQDMGMFPVDINFHPVSISSGLGHSLAICEVRSSNVTGGAR 340
            +G +   G N  GQLG       + PV ++  P  ++     ++A   V +  +T G+ 
Sbjct: 478 GSGGVWCWGRNNSGQLGDGSTIYHITPVAVSGLPSGVT-----AIAAGGVHTCALT-GSG 531

Query: 341 GIVSWGWNRSSQL--GRMGPDNVPLVVEGL 368
           G+  WG N + QL  G     + P+ V GL
Sbjct: 532 GVWCWGGNFAGQLGDGTTTDRSTPVAVSGL 561



 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 107/367 (29%), Positives = 152/367 (41%), Gaps = 55/367 (14%)

Query: 18  RIFMRSASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSL 77
               R++SG  V  +GD S G LG   S T    D+  P  V GL S V +++AG +H+ 
Sbjct: 421 HTCARTSSG-GVWCWGDNSDGQLG-DGSFT----DSSTPVAVSGLASGVETIAAGGWHTC 474

Query: 78  AVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDD 137
           A+T +G VW WGRNN  QLG G+     T   P  V GL    V A  A GV + A+   
Sbjct: 475 ALTGSGGVWCWGRNNSGQLGDGSTIYHIT---PVAVSGLPS-GVTAIAAGGVHTCALTGS 530

Query: 138 GSLWVWGKSKRGQLGLGKDITEAI------VPSRVEALAGEKIVKVSFGWGHALAQTEDG 191
           G +W WG +  GQLG G     +       +PS V A+A   I        H  A T  G
Sbjct: 531 GGVWCWGGNFAGQLGDGTTTDRSTPVAVSGLPSGVTAIAAGDI--------HTCALTGSG 582

Query: 192 KLFGWGYSADGRIGNLGKALESSP-----LDSNIDRSSESDQEISSSTIEKA-------- 238
            ++ WG +  G++G+      S+P     L S +   +   +   + T            
Sbjct: 583 GVWCWGGNDFGQLGDGTTTNRSTPVAVSGLPSGVTAIAAGLRYTCALTGSGGVWCWGYNL 642

Query: 239 QKLVSEGMEKEKYMPIIWEPFLVEGVE--VVDIACGFDHSLVLGRNGVLLSCGSNVYGQL 296
              + +G            P  V G+   V  IA G  ++     +G +   G+N  GQL
Sbjct: 643 SGQLDDGTTSRS------TPVAVSGLPSGVTAIAAGGWYTCARTSSGGVRCWGANGSGQL 696

Query: 297 GREKQDMGMFPVDINFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRM 356
           G         PV ++  P  +++        C + SS       G+  WG N S QLG  
Sbjct: 697 GDGTTTKRSTPVAVSGLPSGVTAIAAGGEHTCALMSSG------GVWCWGRNDSGQLG-- 748

Query: 357 GPDNVPL 363
             D  PL
Sbjct: 749 --DGRPL 753



 Score = 84.7 bits (208), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 92/323 (28%), Positives = 140/323 (43%), Gaps = 40/323 (12%)

Query: 66  VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAF 125
           VT+++AG  H+ A T++G VW WG N+  +LG G+    +T   P  V GL    V A  
Sbjct: 55  VTAIAAGGGHTCARTSSGGVWCWGGNDFGRLGDGSYTDSST---PVAVSGLPS-GVTAIA 110

Query: 126 ASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHAL 185
           A G  + A+   G +W WG +  GQLG G   T +  P  V  L        + GW H  
Sbjct: 111 AGGAHTCALTSSGEVWCWGSNFYGQLGDGSYTTRS-TPVAVSGLPSGVTAIAAGGW-HTC 168

Query: 186 AQTEDGKLFGWGYSADGRIGNLGKALESSP-----LDSNIDRSSESDQE----ISSSTI- 235
           A+T  G ++ WG +  G++G+      S+P     L S +   +  D      +SS  + 
Sbjct: 169 ARTSSGGVWCWGGNYRGQLGDGTTTDRSTPVAVSGLPSEVTAIAAGDAHTCARMSSGEVW 228

Query: 236 ---EKAQKLVSEGMEKEKYMPIIWEPFLVEGVE--VVDIACGFDHSLVLGRNGVLLSCGS 290
                    + +G   +   P+      V G+   V  IA G  H+  L  +G +   G+
Sbjct: 229 CWGGNNYGQLGDGSYTDSSTPVA-----VSGLPSGVTAIAAGGVHTCALTGSGGVRCWGA 283

Query: 291 NVYGQLGREKQDMGMFPVDINFHP---VSISSGLGHSLAICEVRSSNVTGGARGIVSWGW 347
           N  GQLG         P  ++  P    +I++G  H+ A+          G+ G+  WG 
Sbjct: 284 NYSGQLGNGLTFGRSTPGAVSGLPSGVTAIAAGDYHTCALT---------GSGGVWCWGG 334

Query: 348 NRSSQL--GRMGPDNVPLVVEGL 368
           N S QL  G     + P+ V GL
Sbjct: 335 NYSGQLGDGTTTARSTPVAVSGL 357



 Score = 69.3 bits (168), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 55/163 (33%), Positives = 79/163 (48%), Gaps = 7/163 (4%)

Query: 55  EPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVE 114
            P  V GLPS VT+++AG  ++ A+T +G VW WG N   QL  G   SR+T   P  V 
Sbjct: 605 TPVAVSGLPSGVTAIAAGLRYTCALTGSGGVWCWGYNLSGQLDDG-TTSRST---PVAVS 660

Query: 115 GLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKI 174
           GL    V A  A G  + A    G +  WG +  GQLG G   T+   P  V  L    +
Sbjct: 661 GLPS-GVTAIAAGGWYTCARTSSGGVRCWGANGSGQLGDGT-TTKRSTPVAVSGLP-SGV 717

Query: 175 VKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLD 217
             ++ G  H  A    G ++ WG +  G++G+      ++P+D
Sbjct: 718 TAIAAGGEHTCALMSSGGVWCWGRNDSGQLGDGRPLYRTTPVD 760


>gi|410211612|gb|JAA03025.1| hect domain and RLD 6 [Pan troglodytes]
          Length = 1020

 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 85/270 (31%), Positives = 128/270 (47%), Gaps = 45/270 (16%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTR-VPGLPSDVTSVSAGHYHSLAVTNNGAVWA 87
           V+S GD S+G LG         G+  EP + +  L  D+  VS G  HSLAV + G V+A
Sbjct: 44  VLSCGDNSRGQLG---RRGAQRGELPEPIQALETLTVDL--VSCGKEHSLAVCHKGRVFA 98

Query: 88  WGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSK 147
           WG  +E QLG G  E +     PK++  L+ + +         S A+  D  ++ WGK+ 
Sbjct: 99  WGAGSEGQLGIG--EFKEISFTPKKITTLNGIKIIQVSCGHYHSLALSKDSQVFSWGKNS 156

Query: 148 RGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNL 207
            GQLGLGK+      P RV +L G  + +V+ G  H+ A +  G  FGWG ++ G++   
Sbjct: 157 HGQLGLGKEFPSQASPQRVRSLEGIPLAQVAAGGAHSFALSLCGTSFGWGSNSSGQLALS 216

Query: 208 GKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVV 267
           G+ +   P+ SN                    K +S G               ++ + VV
Sbjct: 217 GRNV---PVQSN--------------------KPLSVGA--------------LKNLGVV 239

Query: 268 DIACGFDHSLVLGRNGVLLSCGSNVYGQLG 297
            I+CG  H+ VL ++G + + G N  GQLG
Sbjct: 240 YISCGDAHTAVLTQDGKVFTFGDNRSGQLG 269



 Score = 87.0 bits (214), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 88/318 (27%), Positives = 140/318 (44%), Gaps = 51/318 (16%)

Query: 58  RVPGLP-SDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGL 116
           R  G P +++   ++G  HSL +  N  V + G N+  QLGR   + R    +P  ++ L
Sbjct: 16  RTAGSPGAELLQAASGERHSLLLLTNHRVLSCGDNSRGQLGRRGAQ-RGELPEP--IQAL 72

Query: 117 DQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVK 176
           + + V         S A+   G ++ WG    GQLG+G+    +  P ++  L G KI++
Sbjct: 73  ETLTVDLVSCGKEHSLAVCHKGRVFAWGAGSEGQLGIGEFKEISFTPKKITTLNGIKIIQ 132

Query: 177 VSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIE 236
           VS G  H+LA ++D ++F WG ++ G++G LGK             S  S Q + S    
Sbjct: 133 VSCGHYHSLALSKDSQVFSWGKNSHGQLG-LGKEFP----------SQASPQRVRS---- 177

Query: 237 KAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQL 296
                                   +EG+ +  +A G  HS  L   G     GSN  GQL
Sbjct: 178 ------------------------LEGIPLAQVAAGGAHSFALSLCGTSFGWGSNSSGQL 213

Query: 297 GREKQDMGMFPVDINFHPVSISS--GLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLG 354
               +++   PV  N  P+S+ +   LG     C    + V      + ++G NRS QLG
Sbjct: 214 ALSGRNV---PVQSN-KPLSVGALKNLGVVYISCGDAHTAVLTQDGKVFTFGDNRSGQLG 269

Query: 355 RM-GPDNV-PLVVEGLEG 370
               P+   P +VE ++G
Sbjct: 270 YSPTPEKRGPQLVERIDG 287



 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 54/204 (26%), Positives = 82/204 (40%), Gaps = 16/204 (7%)

Query: 24  ASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRV---PGLPSDVTSVSAGHYHSLAVT 80
           +  + V S+G  S G LGL             P RV    G+P  +  V+AG  HS A++
Sbjct: 144 SKDSQVFSWGKNSHGQLGLGKEFPSQAS----PQRVRSLEGIP--LAQVAAGGAHSFALS 197

Query: 81  NNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSL 140
             G  + WG N+  QL           N P  V  L  + V         ++ +  DG +
Sbjct: 198 LCGTSFGWGSNSSGQLALSGRNVPVQSNKPLSVGALKNLGVVYISCGDAHTAVLTQDGKV 257

Query: 141 WVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTE-DGKLFGWGYS 199
           + +G ++ GQLG      E   P  VE + G  + ++  G  H LA     G++  +G+ 
Sbjct: 258 FTFGDNRSGQLGYS-PTPEKRGPQLVERIDG-LVSQIDCGSYHTLAYVHTTGQVVSFGHG 315

Query: 200 ADGRIGNLGKALESSPLDSNIDRS 223
                 +  K   S  L  N D S
Sbjct: 316 P----SDTSKPTHSEALTENFDIS 335


>gi|74002225|ref|XP_851549.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC6 [Canis lupus
           familiaris]
          Length = 1015

 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 83/271 (30%), Positives = 126/271 (46%), Gaps = 45/271 (16%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPS-DVTSVSAGHYHSLAVTNNGAVWA 87
           V S GD  +G LG      G    A +  R+  L +  V  VS G  HSLAV + G V+A
Sbjct: 44  VHSCGDNGRGQLGQ----RGAPCSA-QLKRIRALETLHVDLVSCGKEHSLAVCHKGRVFA 98

Query: 88  WGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSK 147
           WG  +E QLG G  E + T   P +++ L+ + +         S A+ + G ++ WG + 
Sbjct: 99  WGAGSEGQLGTG--EFKETNLIPMKIKTLNDIKIKQVSCGHYHSLALSEGGQVFSWGSNS 156

Query: 148 RGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNL 207
            GQLGLGK       P RV +L G  + +V+ G  H+ A +  G  FGWG +  G++  L
Sbjct: 157 DGQLGLGKKFPSQASPQRVRSLDGIPLAQVAAGGAHSFALSLSGTSFGWGRNNAGQLA-L 215

Query: 208 GKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVV 267
            K        +N+   S     IS+                            ++ + V+
Sbjct: 216 HK--------NNVSGQSYKPYSISA----------------------------LKNLGVI 239

Query: 268 DIACGFDHSLVLGRNGVLLSCGSNVYGQLGR 298
            I+CG++H++VL +NG + + G N YGQLG 
Sbjct: 240 YISCGYEHTVVLTQNGKVFTFGDNTYGQLGH 270



 Score = 92.8 bits (229), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 64/192 (33%), Positives = 105/192 (54%), Gaps = 13/192 (6%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDA-YEPTRVPGLPS-DVTSVSAGHYHSLAVTNNGAVW 86
           V ++G GS+G LG     TG   +    P ++  L    +  VS GHYHSLA++  G V+
Sbjct: 96  VFAWGAGSEGQLG-----TGEFKETNLIPMKIKTLNDIKIKQVSCGHYHSLALSEGGQVF 150

Query: 87  AWGRNNEVQLGRGA-LESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGK 145
           +WG N++ QLG G    S+A+   P+RV  LD + +    A G  S A+   G+ + WG+
Sbjct: 151 SWGSNSDGQLGLGKKFPSQAS---PQRVRSLDGIPLAQVAAGGAHSFALSLSGTSFGWGR 207

Query: 146 SKRGQLGLGKDIT--EAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGR 203
           +  GQL L K+    ++  P  + AL    ++ +S G+ H +  T++GK+F +G +  G+
Sbjct: 208 NNAGQLALHKNNVSGQSYKPYSISALKNLGVIYISCGYEHTVVLTQNGKVFTFGDNTYGQ 267

Query: 204 IGNLGKALESSP 215
           +G+   A +S P
Sbjct: 268 LGHSPTAEKSGP 279



 Score = 87.8 bits (216), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 86/311 (27%), Positives = 135/311 (43%), Gaps = 52/311 (16%)

Query: 65  DVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLG-RGALESRATWNDPKRVEGLDQVNVCA 123
           ++   ++G  HSL + +NG V + G N   QLG RGA  S       KR+  L+ ++V  
Sbjct: 24  ELRQAASGERHSLLLLSNGQVHSCGDNGRGQLGQRGAPCSAQL----KRIRALETLHVDL 79

Query: 124 AFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGH 183
                  S A+   G ++ WG    GQLG G+     ++P +++ L   KI +VS G  H
Sbjct: 80  VSCGKEHSLAVCHKGRVFAWGAGSEGQLGTGEFKETNLIPMKIKTLNDIKIKQVSCGHYH 139

Query: 184 ALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVS 243
           +LA +E G++F WG ++DG++G LGK   S            S Q + S           
Sbjct: 140 SLALSEGGQVFSWGSNSDGQLG-LGKKFPSQ----------ASPQRVRS----------- 177

Query: 244 EGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDM 303
                            ++G+ +  +A G  HS  L  +G     G N  GQL   K ++
Sbjct: 178 -----------------LDGIPLAQVAAGGAHSFALSLSGTSFGWGRNNAGQLALHKNNV 220

Query: 304 GMFPVDINFHPVSISS--GLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGR--MGPD 359
                  ++ P SIS+   LG     C    + V      + ++G N   QLG       
Sbjct: 221 S----GQSYKPYSISALKNLGVIYISCGYEHTVVLTQNGKVFTFGDNTYGQLGHSPTAEK 276

Query: 360 NVPLVVEGLEG 370
           + P +VEG++G
Sbjct: 277 SGPQLVEGIDG 287



 Score = 48.5 bits (114), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 34/99 (34%), Positives = 49/99 (49%), Gaps = 7/99 (7%)

Query: 20  FMRSASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPS-DVTSVSAGHYHSLA 78
           F  S SGT   SFG G   A  L      V G +Y+P  +  L +  V  +S G+ H++ 
Sbjct: 194 FALSLSGT---SFGWGRNNAGQLALHKNNVSGQSYKPYSISALKNLGVIYISCGYEHTVV 250

Query: 79  VTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLD 117
           +T NG V+ +G N   QLG      ++    P+ VEG+D
Sbjct: 251 LTQNGKVFTFGDNTYGQLGHSPTAEKS---GPQLVEGID 286



 Score = 39.7 bits (91), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 33/97 (34%), Positives = 43/97 (44%), Gaps = 15/97 (15%)

Query: 263 GVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGRE----KQDMGMFPVDINFHPVSIS 318
           GVE+   A G  HSL+L  NG + SCG N  GQLG+        +         H   +S
Sbjct: 22  GVELRQAASGERHSLLLLSNGQVHSCGDNGRGQLGQRGAPCSAQLKRIRALETLHVDLVS 81

Query: 319 SGLGHSLAICEVRSSNVTGGARG-IVSWGWNRSSQLG 354
            G  HSLA+C           +G + +WG     QLG
Sbjct: 82  CGKEHSLAVCH----------KGRVFAWGAGSEGQLG 108


>gi|426236323|ref|XP_004012119.1| PREDICTED: RCC1 and BTB domain-containing protein 2 [Ovis aries]
          Length = 527

 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 59/151 (39%), Positives = 89/151 (58%), Gaps = 5/151 (3%)

Query: 66  VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAF 125
           V  V+ G YHSL +T++G V+AWG NN  Q+G G   S A    P+RV G  Q  V    
Sbjct: 130 VIEVACGSYHSLVLTSDGEVFAWGYNNSGQVGSG---STANQPIPRRVTGCLQNKVVVNI 186

Query: 126 ASG-VVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHA 184
           A G + S A+ + G ++VWG +  GQLGLG    +   P RV AL G ++ +V+ G+ H 
Sbjct: 187 ACGQMCSMAVVNTGEVFVWGYNGNGQLGLGSSGNQP-TPCRVAALQGIRVQRVACGYAHT 245

Query: 185 LAQTEDGKLFGWGYSADGRIGNLGKALESSP 215
           L  T++G+++ WG ++ G++G   K+ +S P
Sbjct: 246 LVLTDEGQVYAWGANSYGQLGTGNKSNQSYP 276



 Score = 84.3 bits (207), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 64/249 (25%), Positives = 115/249 (46%), Gaps = 19/249 (7%)

Query: 77  LAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNV-CAAFASGVVSSAIG 135
           L  T N  ++  G N    LG G ++S     +P+R++ L    + C ++ SG       
Sbjct: 35  LYTTVNDEIFVLGTNCCGCLGLGDVQSTI---EPRRLDSLTGKKIACLSYGSGPHIVLAT 91

Query: 136 DDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEA-LAGEKIVKVSFGWGHALAQTEDGKLF 194
            +G ++ WG +   QLG G      +VP  +   L+ +++++V+ G  H+L  T DG++F
Sbjct: 92  TEGEVFTWGHNAYSQLGNGT-TNAGLVPYHISTNLSNKQVIEVACGSYHSLVLTSDGEVF 150

Query: 195 GWGYSADGRIGNLGKALESSP------LDSNIDRSSESDQEISSSTIEKAQKLV------ 242
            WGY+  G++G+   A +  P      L + +  +    Q  S + +   +  V      
Sbjct: 151 AWGYNNSGQVGSGSTANQPIPRRVTGCLQNKVVVNIACGQMCSMAVVNTGEVFVWGYNGN 210

Query: 243 -SEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQ 301
              G+      P       ++G+ V  +ACG+ H+LVL   G + + G+N YGQLG   +
Sbjct: 211 GQLGLGSSGNQPTPCRVAALQGIRVQRVACGYAHTLVLTDEGQVYAWGANSYGQLGTGNK 270

Query: 302 DMGMFPVDI 310
               +P  +
Sbjct: 271 SNQSYPTPV 279



 Score = 62.0 bits (149), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 67/261 (25%), Positives = 114/261 (43%), Gaps = 59/261 (22%)

Query: 118 QVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKV 177
           Q  V  + ++ ++ + + D+  ++V G +  G LGLG D+   I P R+++L G+KI  +
Sbjct: 23  QACVFGSASNELLYTTVNDE--IFVLGTNCCGCLGLG-DVQSTIEPRRLDSLTGKKIACL 79

Query: 178 SFGWG-HALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIE 236
           S+G G H +  T +G++F WG++A  ++GN        P   + + S++           
Sbjct: 80  SYGSGPHIVLATTEGEVFTWGHNAYSQLGNGTTNAGLVPYHISTNLSNK----------- 128

Query: 237 KAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQL 296
                                       +V+++ACG  HSLVL  +G + + G N  GQ+
Sbjct: 129 ----------------------------QVIEVACGSYHSLVLTSDGEVFAWGYNNSGQV 160

Query: 297 GREKQDMGMFPVDI-----NFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSS 351
           G         P  +     N   V+I+ G   S+A+       V  G   +  WG+N + 
Sbjct: 161 GSGSTANQPIPRRVTGCLQNKVVVNIACGQMCSMAV-------VNTGE--VFVWGYNGNG 211

Query: 352 Q--LGRMGPDNVPLVVEGLEG 370
           Q  LG  G    P  V  L+G
Sbjct: 212 QLGLGSSGNQPTPCRVAALQG 232


>gi|182416055|ref|YP_001821121.1| cell surface receptor IPT/TIG domain-containing protein [Opitutus
           terrae PB90-1]
 gi|177843269|gb|ACB77521.1| cell surface receptor IPT/TIG domain protein [Opitutus terrae
           PB90-1]
          Length = 1848

 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 88/315 (27%), Positives = 143/315 (45%), Gaps = 61/315 (19%)

Query: 66  VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAF 125
           + +++ G+ HSLA+ ++G V+AWG N+E QLG G+           R   L    V A  
Sbjct: 233 IIAIATGYEHSLALASDGIVYAWGDNSEGQLGDGSTTDSKVPMAVDRTGVLTGKTVVAIA 292

Query: 126 ASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVE--ALAGEKIVKVSFGWGH 183
           A    S A+  DG+++ WG +   QLG G  +T++ VP  V+   LAG+ +  V+ G  H
Sbjct: 293 AGRNHSLAVASDGTVYAWGDNYYAQLGDGS-LTDSSVPVPVDLTELAGKSVADVAGGDRH 351

Query: 184 ALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVS 243
           +LAQ  DG ++ WG + +G++G+    L+ +P+                         V+
Sbjct: 352 SLAQASDGTVYAWGDNTNGQMGDTIAHLKPAPVS------------------------VT 387

Query: 244 EGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDM 303
            G               + G  +V +A G  H+L L  +G + + G N  GQLG      
Sbjct: 388 GGSA-------------LAGKTIVAVAAGGYHNLALASDGTVCTWGYNYNGQLGNNSSGA 434

Query: 304 G---MFPVDINFH---P----VSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQL 353
           G     P+ +N +   P    V++ +G+ HSLA+    +         + +WG+N   QL
Sbjct: 435 GEKSTVPIAVNSYGALPGKTIVAVGAGVSHSLALASDGA---------LCTWGFNSQGQL 485

Query: 354 GRMGPDN--VPLVVE 366
           G     N  VP+ V 
Sbjct: 486 GDNSTTNRTVPVTVS 500



 Score = 94.7 bits (234), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 83/294 (28%), Positives = 128/294 (43%), Gaps = 52/294 (17%)

Query: 66  VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAF 125
           V +++AG  HSLAV ++G V+AWG N   QLG G+L + ++   P  +  L   +V    
Sbjct: 288 VVAIAAGRNHSLAVASDGTVYAWGDNYYAQLGDGSL-TDSSVPVPVDLTELAGKSVADVA 346

Query: 126 ASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRV-----EALAGEKIVKVSFG 180
                S A   DG+++ WG +  GQ+G   D    + P+ V      ALAG+ IV V+ G
Sbjct: 347 GGDRHSLAQASDGTVYAWGDNTNGQMG---DTIAHLKPAPVSVTGGSALAGKTIVAVAAG 403

Query: 181 WGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQK 240
             H LA   DG +  WGY+ +G++GN                                  
Sbjct: 404 GYHNLALASDGTVCTWGYNYNGQLGN---------------------------------- 429

Query: 241 LVSEGMEKEKYMPIIWEPF-LVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGRE 299
             S G  ++  +PI    +  + G  +V +  G  HSL L  +G L + G N  GQLG  
Sbjct: 430 -NSSGAGEKSTVPIAVNSYGALPGKTIVAVGAGVSHSLALASDGALCTWGFNSQGQLGDN 488

Query: 300 KQDMGMFPVDIN-----FHPVSISSGLGHSLAICEVRSSNVTG--GARGIVSWG 346
                  PV ++     F  +  +    +SLA+  V    +T    +RG+ + G
Sbjct: 489 STTNRTVPVTVSAGGLMFQALGTTCDAVYSLALATVPPPTITAVSPSRGLTTGG 542



 Score = 82.0 bits (201), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 83/333 (24%), Positives = 146/333 (43%), Gaps = 51/333 (15%)

Query: 61  GLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGR---GALESRATWNDPKRVEGLD 117
           GL   V    AG    L V      +AWG N++ QLG    G++ +++         G+ 
Sbjct: 110 GLTPVVAGAFAGGQRYLRVPPGTVSYAWGDNSKGQLGNGTGGSMGNKSVVPVAADRSGVL 169

Query: 118 QVNVCAAFASGVVSS-AIGDDGSLWVWGKSKRGQL-----GLGKDITEAIVPSRVE---A 168
                 A A+    S A+  DG+++ WG +  GQL     GL  DI++  VP  V+    
Sbjct: 170 AGKTLVALATSYRHSLALASDGTVYAWGYNANGQLGNGSGGLSTDISK--VPVAVDMTGV 227

Query: 169 LAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRS----- 223
           LAG+ I+ ++ G+ H+LA   DG ++ WG +++G++G+        P+   +DR+     
Sbjct: 228 LAGKTIIAIATGYEHSLALASDGIVYAWGDNSEGQLGDGSTTDSKVPM--AVDRTGVLTG 285

Query: 224 ----------SESDQEISSSTI----EKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDI 269
                     + S    S  T+    +     + +G   +  +P+  +   + G  V D+
Sbjct: 286 KTVVAIAAGRNHSLAVASDGTVYAWGDNYYAQLGDGSLTDSSVPVPVDLTELAGKSVADV 345

Query: 270 ACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDIN-------FHPVSISSGLG 322
           A G  HSL    +G + + G N  GQ+G     +   PV +           V++++G  
Sbjct: 346 AGGDRHSLAQASDGTVYAWGDNTNGQMGDTIAHLKPAPVSVTGGSALAGKTIVAVAAGGY 405

Query: 323 HSLAICEVRSSNVTGGARGIVSWGWNRSSQLGR 355
           H+LA+    +         + +WG+N + QLG 
Sbjct: 406 HNLALASDGT---------VCTWGYNYNGQLGN 429



 Score = 74.7 bits (182), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 61/245 (24%), Positives = 109/245 (44%), Gaps = 59/245 (24%)

Query: 141 WVWGKSKRGQLG------LGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLF 194
           + WG + +GQLG      +G      +   R   LAG+ +V ++  + H+LA   DG ++
Sbjct: 135 YAWGDNSKGQLGNGTGGSMGNKSVVPVAADRSGVLAGKTLVALATSYRHSLALASDGTVY 194

Query: 195 GWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPI 254
            WGY+A+G++GN      S  L ++I +                             +P+
Sbjct: 195 AWGYNANGQLGN-----GSGGLSTDISK-----------------------------VPV 220

Query: 255 IWEPF-LVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINF- 312
             +   ++ G  ++ IA G++HSL L  +G++ + G N  GQLG         P+ ++  
Sbjct: 221 AVDMTGVLAGKTIIAIATGYEHSLALASDGIVYAWGDNSEGQLGDGSTTDSKVPMAVDRT 280

Query: 313 ------HPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQL--GRMGPDNVPLV 364
                   V+I++G  HSLA+    +         + +WG N  +QL  G +   +VP+ 
Sbjct: 281 GVLTGKTVVAIAAGRNHSLAVASDGT---------VYAWGDNYYAQLGDGSLTDSSVPVP 331

Query: 365 VEGLE 369
           V+  E
Sbjct: 332 VDLTE 336


>gi|114595105|ref|XP_001160851.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC6 isoform 2
           [Pan troglodytes]
          Length = 1020

 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 85/270 (31%), Positives = 128/270 (47%), Gaps = 45/270 (16%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTR-VPGLPSDVTSVSAGHYHSLAVTNNGAVWA 87
           V+S GD S+G LG         G+  EP + +  L  D+  VS G  HSLAV + G V+A
Sbjct: 44  VLSCGDNSRGQLG---RRGAQRGELPEPIQALETLTVDL--VSCGKEHSLAVCHKGRVFA 98

Query: 88  WGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSK 147
           WG  +E QLG G  E +     PK++  L+ + +         S A+  D  ++ WGK+ 
Sbjct: 99  WGAGSEGQLGIG--EFKEISFTPKKITTLNGIKIIQVSCGHYHSLALSKDSQVFSWGKNS 156

Query: 148 RGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNL 207
            GQLGLGK+      P RV +L G  + +V+ G  H+ A +  G  FGWG ++ G++   
Sbjct: 157 HGQLGLGKEFPSQASPQRVRSLEGIPLAQVAAGGAHSFALSLCGTSFGWGSNSSGQLALS 216

Query: 208 GKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVV 267
           G+ +   P+ SN                    K +S G               ++ + VV
Sbjct: 217 GRNV---PVQSN--------------------KPLSVGA--------------LKNLGVV 239

Query: 268 DIACGFDHSLVLGRNGVLLSCGSNVYGQLG 297
            I+CG  H+ VL ++G + + G N  GQLG
Sbjct: 240 YISCGDAHTAVLTQDGKVFTFGDNRSGQLG 269



 Score = 87.0 bits (214), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 88/318 (27%), Positives = 140/318 (44%), Gaps = 51/318 (16%)

Query: 58  RVPGLP-SDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGL 116
           R  G P +++   ++G  HSL +  N  V + G N+  QLGR   + R    +P  ++ L
Sbjct: 16  RTAGSPGAELLQAASGERHSLLLLTNHRVLSCGDNSRGQLGRRGAQ-RGELPEP--IQAL 72

Query: 117 DQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVK 176
           + + V         S A+   G ++ WG    GQLG+G+    +  P ++  L G KI++
Sbjct: 73  ETLTVDLVSCGKEHSLAVCHKGRVFAWGAGSEGQLGIGEFKEISFTPKKITTLNGIKIIQ 132

Query: 177 VSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIE 236
           VS G  H+LA ++D ++F WG ++ G++G LGK             S  S Q + S    
Sbjct: 133 VSCGHYHSLALSKDSQVFSWGKNSHGQLG-LGKEFP----------SQASPQRVRS---- 177

Query: 237 KAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQL 296
                                   +EG+ +  +A G  HS  L   G     GSN  GQL
Sbjct: 178 ------------------------LEGIPLAQVAAGGAHSFALSLCGTSFGWGSNSSGQL 213

Query: 297 GREKQDMGMFPVDINFHPVSISS--GLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLG 354
               +++   PV  N  P+S+ +   LG     C    + V      + ++G NRS QLG
Sbjct: 214 ALSGRNV---PVQSN-KPLSVGALKNLGVVYISCGDAHTAVLTQDGKVFTFGDNRSGQLG 269

Query: 355 RM-GPDNV-PLVVEGLEG 370
               P+   P +VE ++G
Sbjct: 270 YSPTPEKRGPQLVERIDG 287



 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 54/204 (26%), Positives = 82/204 (40%), Gaps = 16/204 (7%)

Query: 24  ASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRV---PGLPSDVTSVSAGHYHSLAVT 80
           +  + V S+G  S G LGL             P RV    G+P  +  V+AG  HS A++
Sbjct: 144 SKDSQVFSWGKNSHGQLGLGKEFPSQAS----PQRVRSLEGIP--LAQVAAGGAHSFALS 197

Query: 81  NNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSL 140
             G  + WG N+  QL           N P  V  L  + V         ++ +  DG +
Sbjct: 198 LCGTSFGWGSNSSGQLALSGRNVPVQSNKPLSVGALKNLGVVYISCGDAHTAVLTQDGKV 257

Query: 141 WVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTE-DGKLFGWGYS 199
           + +G ++ GQLG      E   P  VE + G  + ++  G  H LA     G++  +G+ 
Sbjct: 258 FTFGDNRSGQLGYS-PTPEKRGPQLVERIDG-LVSQIDCGSYHTLAYVHTTGQVVSFGHG 315

Query: 200 ADGRIGNLGKALESSPLDSNIDRS 223
                 +  K   S  L  N D S
Sbjct: 316 P----SDTSKPTHSEALTENFDIS 335


>gi|61563742|ref|NP_060382.3| probable E3 ubiquitin-protein ligase HERC6 isoform 1 [Homo sapiens]
 gi|74750679|sp|Q8IVU3.2|HERC6_HUMAN RecName: Full=Probable E3 ubiquitin-protein ligase HERC6; AltName:
           Full=HECT domain and RCC1-like domain-containing protein
           6
 gi|48686728|gb|AAQ14893.1|AF336798_1 HERC6 [Homo sapiens]
 gi|66840150|gb|AAH42047.2| Hect domain and RLD 6 [Homo sapiens]
 gi|194381386|dbj|BAG58647.1| unnamed protein product [Homo sapiens]
          Length = 1022

 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 85/270 (31%), Positives = 128/270 (47%), Gaps = 45/270 (16%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTR-VPGLPSDVTSVSAGHYHSLAVTNNGAVWA 87
           V+S GD S+G LG         G+  EP + +  L  D+  VS G  HSLAV + G V+A
Sbjct: 44  VLSCGDNSRGQLG---RRGAQRGELPEPIQALETLIVDL--VSCGKEHSLAVCHKGRVFA 98

Query: 88  WGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSK 147
           WG  +E QLG G  E +     PK++  L+ + +         S A+  D  ++ WGK+ 
Sbjct: 99  WGAGSEGQLGIG--EFKEISFTPKKIMTLNDIKIIQVSCGHYHSLALSKDSQVFSWGKNS 156

Query: 148 RGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNL 207
            GQLGLGK+      P RV +L G  + +V+ G  H+ A +  G  FGWG ++ G++   
Sbjct: 157 HGQLGLGKEFPSQASPQRVRSLEGIPLAQVAAGGAHSFALSLCGTSFGWGSNSAGQLALS 216

Query: 208 GKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVV 267
           G+ +   P+ SN                    K +S G               ++ + VV
Sbjct: 217 GRNV---PVQSN--------------------KPLSVGA--------------LKNLGVV 239

Query: 268 DIACGFDHSLVLGRNGVLLSCGSNVYGQLG 297
            I+CG  H+ VL ++G + + G N  GQLG
Sbjct: 240 YISCGDAHTAVLTQDGKVFTFGDNRSGQLG 269



 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 87/318 (27%), Positives = 139/318 (43%), Gaps = 51/318 (16%)

Query: 58  RVPGLP-SDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGL 116
           R  G P +++   ++G  HSL +  N  V + G N+  QLGR   + R    +P  ++ L
Sbjct: 16  RTAGSPGAELLQAASGERHSLLLLTNHRVLSCGDNSRGQLGRRGAQ-RGELPEP--IQAL 72

Query: 117 DQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVK 176
           + + V         S A+   G ++ WG    GQLG+G+    +  P ++  L   KI++
Sbjct: 73  ETLIVDLVSCGKEHSLAVCHKGRVFAWGAGSEGQLGIGEFKEISFTPKKIMTLNDIKIIQ 132

Query: 177 VSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIE 236
           VS G  H+LA ++D ++F WG ++ G++G LGK             S  S Q + S    
Sbjct: 133 VSCGHYHSLALSKDSQVFSWGKNSHGQLG-LGKEFP----------SQASPQRVRS---- 177

Query: 237 KAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQL 296
                                   +EG+ +  +A G  HS  L   G     GSN  GQL
Sbjct: 178 ------------------------LEGIPLAQVAAGGAHSFALSLCGTSFGWGSNSAGQL 213

Query: 297 GREKQDMGMFPVDINFHPVSISS--GLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLG 354
               +++   PV  N  P+S+ +   LG     C    + V      + ++G NRS QLG
Sbjct: 214 ALSGRNV---PVQSN-KPLSVGALKNLGVVYISCGDAHTAVLTQDGKVFTFGDNRSGQLG 269

Query: 355 RM-GPDNV-PLVVEGLEG 370
               P+   P +VE ++G
Sbjct: 270 YSPTPEKRGPQLVERIDG 287



 Score = 48.9 bits (115), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 48/179 (26%), Positives = 75/179 (41%), Gaps = 12/179 (6%)

Query: 24  ASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRV---PGLPSDVTSVSAGHYHSLAVT 80
           +  + V S+G  S G LGL             P RV    G+P  +  V+AG  HS A++
Sbjct: 144 SKDSQVFSWGKNSHGQLGLGKEFPSQAS----PQRVRSLEGIP--LAQVAAGGAHSFALS 197

Query: 81  NNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSL 140
             G  + WG N+  QL           N P  V  L  + V         ++ +  DG +
Sbjct: 198 LCGTSFGWGSNSAGQLALSGRNVPVQSNKPLSVGALKNLGVVYISCGDAHTAVLTQDGKV 257

Query: 141 WVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTE-DGKLFGWGY 198
           + +G ++ GQLG      E   P  VE + G  + ++  G  H LA     G++  +G+
Sbjct: 258 FTFGDNRSGQLGYS-PTPEKRGPQLVERIDG-LVSQIDCGSYHTLAYVHTTGQVVSFGH 314


>gi|119626424|gb|EAX06019.1| hect domain and RLD 6, isoform CRA_b [Homo sapiens]
          Length = 1028

 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 85/270 (31%), Positives = 128/270 (47%), Gaps = 45/270 (16%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTR-VPGLPSDVTSVSAGHYHSLAVTNNGAVWA 87
           V+S GD S+G LG         G+  EP + +  L  D+  VS G  HSLAV + G V+A
Sbjct: 44  VLSCGDNSRGQLG---RRGAQRGELPEPIQALETLIVDL--VSCGKEHSLAVCHKGRVFA 98

Query: 88  WGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSK 147
           WG  +E QLG G  E +     PK++  L+ + +         S A+  D  ++ WGK+ 
Sbjct: 99  WGAGSEGQLGIG--EFKEISFTPKKIMTLNDIKIIQVSCGHYHSLALSKDSQVFSWGKNS 156

Query: 148 RGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNL 207
            GQLGLGK+      P RV +L G  + +V+ G  H+ A +  G  FGWG ++ G++   
Sbjct: 157 HGQLGLGKEFPSQASPQRVRSLEGIPLAQVAAGGAHSFALSLCGTSFGWGSNSAGQLALS 216

Query: 208 GKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVV 267
           G+ +   P+ SN                    K +S G               ++ + VV
Sbjct: 217 GRNV---PVQSN--------------------KPLSVGA--------------LKNLGVV 239

Query: 268 DIACGFDHSLVLGRNGVLLSCGSNVYGQLG 297
            I+CG  H+ VL ++G + + G N  GQLG
Sbjct: 240 YISCGDAHTAVLTQDGKVFTFGDNRSGQLG 269



 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 90/328 (27%), Positives = 143/328 (43%), Gaps = 53/328 (16%)

Query: 50  GGDAYE--PTRVPGLP-SDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRAT 106
           G D+ E    R  G P +++   ++G  HSL +  N  V + G N+  QLGR   + R  
Sbjct: 6   GADSRELQRRRTAGSPGAELLQAASGERHSLLLLTNHRVLSCGDNSRGQLGRRGAQ-RGE 64

Query: 107 WNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRV 166
             +P  ++ L+ + V         S A+   G ++ WG    GQLG+G+    +  P ++
Sbjct: 65  LPEP--IQALETLIVDLVSCGKEHSLAVCHKGRVFAWGAGSEGQLGIGEFKEISFTPKKI 122

Query: 167 EALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSES 226
             L   KI++VS G  H+LA ++D ++F WG ++ G++G LGK             S  S
Sbjct: 123 MTLNDIKIIQVSCGHYHSLALSKDSQVFSWGKNSHGQLG-LGKEFP----------SQAS 171

Query: 227 DQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLL 286
            Q + S                            +EG+ +  +A G  HS  L   G   
Sbjct: 172 PQRVRS----------------------------LEGIPLAQVAAGGAHSFALSLCGTSF 203

Query: 287 SCGSNVYGQLGREKQDMGMFPVDINFHPVSISS--GLGHSLAICEVRSSNVTGGARGIVS 344
             GSN  GQL    +++   PV  N  P+S+ +   LG     C    + V      + +
Sbjct: 204 GWGSNSAGQLALSGRNV---PVQSN-KPLSVGALKNLGVVYISCGDAHTAVLTQDGKVFT 259

Query: 345 WGWNRSSQLGRM-GPDNV-PLVVEGLEG 370
           +G NRS QLG    P+   P +VE ++G
Sbjct: 260 FGDNRSGQLGYSPTPEKRGPQLVERIDG 287



 Score = 48.9 bits (115), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 48/179 (26%), Positives = 75/179 (41%), Gaps = 12/179 (6%)

Query: 24  ASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRV---PGLPSDVTSVSAGHYHSLAVT 80
           +  + V S+G  S G LGL             P RV    G+P  +  V+AG  HS A++
Sbjct: 144 SKDSQVFSWGKNSHGQLGLGKEFPSQAS----PQRVRSLEGIP--LAQVAAGGAHSFALS 197

Query: 81  NNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSL 140
             G  + WG N+  QL           N P  V  L  + V         ++ +  DG +
Sbjct: 198 LCGTSFGWGSNSAGQLALSGRNVPVQSNKPLSVGALKNLGVVYISCGDAHTAVLTQDGKV 257

Query: 141 WVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTE-DGKLFGWGY 198
           + +G ++ GQLG      E   P  VE + G  + ++  G  H LA     G++  +G+
Sbjct: 258 FTFGDNRSGQLGYS-PTPEKRGPQLVERIDG-LVSQIDCGSYHTLAYVHTTGQVVSFGH 314


>gi|194040610|ref|XP_001928937.1| PREDICTED: RCC1 and BTB domain-containing protein 2 isoform 1 [Sus
           scrofa]
          Length = 568

 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 58/151 (38%), Positives = 88/151 (58%), Gaps = 5/151 (3%)

Query: 66  VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAF 125
           V  V+ G YHSL +T++G V+AWG NN  Q+G G   S A    P+RV G  Q       
Sbjct: 171 VIEVACGSYHSLVLTSDGEVFAWGYNNSGQVGSG---STANQPIPRRVTGCLQNKTVVNI 227

Query: 126 ASG-VVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHA 184
           A G + S A+ D G ++VWG +  GQLGLG    +   P R+ AL G ++ +V+ G+ H 
Sbjct: 228 ACGQMCSMAVVDTGEVYVWGYNGNGQLGLGSGGNQP-TPCRIAALQGIRVQRVACGYAHT 286

Query: 185 LAQTEDGKLFGWGYSADGRIGNLGKALESSP 215
           L  T++G+++ WG ++ G++G   K+ +S P
Sbjct: 287 LVLTDEGQVYAWGANSYGQLGTGNKSNQSYP 317



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 64/249 (25%), Positives = 115/249 (46%), Gaps = 19/249 (7%)

Query: 77  LAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNV-CAAFASGVVSSAIG 135
           L  T N  ++  G N    LG G ++S     +P+R++ L    + C ++ SG       
Sbjct: 76  LYTTVNDEIFVLGTNCCGCLGLGDVQSTI---EPRRLDSLSGKKIACLSYGSGPHVVLAT 132

Query: 136 DDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEA-LAGEKIVKVSFGWGHALAQTEDGKLF 194
            +G ++ WG +   QLG G      +VP  +   L+ +++++V+ G  H+L  T DG++F
Sbjct: 133 TEGEVFTWGHNAYSQLGNGT-TNHGLVPCHISTNLSNKQVIEVACGSYHSLVLTSDGEVF 191

Query: 195 GWGYSADGRIGNLGKALESSP------LDSNIDRSSESDQEISSSTIEKAQKLV------ 242
            WGY+  G++G+   A +  P      L +    +    Q  S + ++  +  V      
Sbjct: 192 AWGYNNSGQVGSGSTANQPIPRRVTGCLQNKTVVNIACGQMCSMAVVDTGEVYVWGYNGN 251

Query: 243 -SEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQ 301
              G+      P       ++G+ V  +ACG+ H+LVL   G + + G+N YGQLG   +
Sbjct: 252 GQLGLGSGGNQPTPCRIAALQGIRVQRVACGYAHTLVLTDEGQVYAWGANSYGQLGTGNK 311

Query: 302 DMGMFPVDI 310
               +P  +
Sbjct: 312 SNQSYPTPV 320



 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 70/270 (25%), Positives = 115/270 (42%), Gaps = 66/270 (24%)

Query: 114 EGLDQVNVCAAFASG---VVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALA 170
           E L  V     F S    V+ + + D+  ++V G +  G LGLG D+   I P R+++L+
Sbjct: 57  EELQLVRQACVFGSAGNEVLYTTVNDE--IFVLGTNCCGCLGLG-DVQSTIEPRRLDSLS 113

Query: 171 GEKIVKVSFGWG-HALAQTEDGKLFGWGYSADGRIGN--LGKALESSPLDSNIDRSSESD 227
           G+KI  +S+G G H +  T +G++F WG++A  ++GN      L    + +N+       
Sbjct: 114 GKKIACLSYGSGPHVVLATTEGEVFTWGHNAYSQLGNGTTNHGLVPCHISTNLSNK---- 169

Query: 228 QEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLS 287
                                                +V+++ACG  HSLVL  +G + +
Sbjct: 170 -------------------------------------QVIEVACGSYHSLVLTSDGEVFA 192

Query: 288 CGSNVYGQLGREKQDMGMFPVDI-----NFHPVSISSGLGHSLAICEVRSSNVTGGARGI 342
            G N  GQ+G         P  +     N   V+I+ G   S+A+ +      TG    +
Sbjct: 193 WGYNNSGQVGSGSTANQPIPRRVTGCLQNKTVVNIACGQMCSMAVVD------TGE---V 243

Query: 343 VSWGWNRSSQ--LGRMGPDNVPLVVEGLEG 370
             WG+N + Q  LG  G    P  +  L+G
Sbjct: 244 YVWGYNGNGQLGLGSGGNQPTPCRIAALQG 273


>gi|218782845|ref|YP_002434163.1| chromosome condensation regulator RCC1 [Desulfatibacillum
           alkenivorans AK-01]
 gi|218764229|gb|ACL06695.1| regulator of chromosome condensation RCC1 [Desulfatibacillum
           alkenivorans AK-01]
          Length = 437

 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 103/355 (29%), Positives = 162/355 (45%), Gaps = 47/355 (13%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRV---PGLPSD-VTSVSAGHYHSLAVTNNGA 84
           V ++GD S G LG+ T+       +  P RV    G P + V  V+AG  HSLA+T  G 
Sbjct: 76  VWAWGDNSSGQLGIGTNKA-----SLSPVRVMHKSGAPLNGVLKVAAGERHSLALTAKGE 130

Query: 85  VWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWG 144
           VW WG N++ QLG G    R +    + +      N+  A   G  S A+  DG++W WG
Sbjct: 131 VWTWGDNSKGQLGDGFFYERRSPVKVRHIRTNPLENIVGAACGGKHSLAVASDGTVWAWG 190

Query: 145 KSKRGQLGLGKDITEAIVPSRV----EALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSA 200
            +  GQ+G G  +     P +V    + LAG K V   F   H+LA + DG ++ WG + 
Sbjct: 191 SNSDGQIGDGT-LKNRQNPRQVMRFGKPLAGVKAVAAGF--AHSLALSVDGTVWAWGDNE 247

Query: 201 DGRIGNLGKALESSPLD--SNIDRSSESDQEISSSTIEKAQKLVSEG------------M 246
            G++G+       +P+    ++DR  ++   I++     +  L  +G            +
Sbjct: 248 FGQLGDCSDYDRKAPVQVMHSVDRPLDNVVAIAAGR-AFSLALTRDGEVWAWGNNGVGQL 306

Query: 247 EKEKYMPIIWEPFLVEGVE------VVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREK 300
               +   + +P  V          V  I     HSL L  +G +L+ G+   GQLG+  
Sbjct: 307 GMGPHNGFVRDPLPVRAANGVPLKGVRAITANGRHSLALMNDGSVLAWGAGDRGQLGQGA 366

Query: 301 QDMGMFPVDINFHPV-SISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLG 354
           Q+    P   + H V  +++G  HSLA+ E        GA  +++WG N+  QLG
Sbjct: 367 QNHEDHPTLASLHSVICLAAGRYHSLAVAE-------NGA--VLAWGDNQKGQLG 412



 Score = 87.8 bits (216), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 100/331 (30%), Positives = 137/331 (41%), Gaps = 54/331 (16%)

Query: 38  GALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGH-YHSLAVTNNGAVWAWGRNNEVQL 96
           G L   +S      +A    R    P  V  ++AG  YHSL V N+G VWAWG N+  QL
Sbjct: 28  GCLACTSSQPRPSEEARTSARHRNAPHPVWGIAAGGGYHSLVVKNDGTVWAWGDNSSGQL 87

Query: 97  GRGALESRATWNDPKRV---EGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGL 153
           G G  ++  +   P RV    G     V    A    S A+   G +W WG + +GQLG 
Sbjct: 88  GIGTNKASLS---PVRVMHKSGAPLNGVLKVAAGERHSLALTAKGEVWTWGDNSKGQLGD 144

Query: 154 GKDITEAIVPSRVEALAG---EKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKA 210
           G    E   P +V  +     E IV  + G  H+LA   DG ++ WG ++DG+IG     
Sbjct: 145 GF-FYERRSPVKVRHIRTNPLENIVGAACGGKHSLAVASDGTVWAWGSNSDGQIG----- 198

Query: 211 LESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIA 270
                                            +G  K +  P     F      V  +A
Sbjct: 199 ---------------------------------DGTLKNRQNPRQVMRFGKPLAGVKAVA 225

Query: 271 CGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFHPVSISSGLGHSLAICEV 330
            GF HSL L  +G + + G N +GQLG         PV +  H  S+   L + +AI   
Sbjct: 226 AGFAHSLALSVDGTVWAWGDNEFGQLGDCSDYDRKAPVQV-MH--SVDRPLDNVVAIAAG 282

Query: 331 RSSNVTGGARGIV-SWGWNRSSQLGRMGPDN 360
           R+ ++     G V +WG N   QLG MGP N
Sbjct: 283 RAFSLALTRDGEVWAWGNNGVGQLG-MGPHN 312



 Score = 74.7 bits (182), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 73/254 (28%), Positives = 103/254 (40%), Gaps = 59/254 (23%)

Query: 66  VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRV-EGLDQV--NVC 122
           V +V+AG  HSLA++ +G VWAWG N   QLG  +   R     P +V   +D+   NV 
Sbjct: 221 VKAVAAGFAHSLALSVDGTVWAWGDNEFGQLGDCSDYDRKA---PVQVMHSVDRPLDNVV 277

Query: 123 AAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAG---EKIVKVSF 179
           A  A    S A+  DG +W WG +  GQLG+G        P  V A  G   + +  ++ 
Sbjct: 278 AIAAGRAFSLALTRDGEVWAWGNNGVGQLGMGPHNGFVRDPLPVRAANGVPLKGVRAITA 337

Query: 180 GWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQ 239
              H+LA   DG +  WG    G++G   +  E  P  +++                   
Sbjct: 338 NGRHSLALMNDGSVLAWGAGDRGQLGQGAQNHEDHPTLASLH------------------ 379

Query: 240 KLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGRE 299
                                     V+ +A G  HSL +  NG +L+ G N  GQLG  
Sbjct: 380 -------------------------SVICLAAGRYHSLAVAENGAVLAWGDNQKGQLGIG 414

Query: 300 KQDMGMFPVDINFH 313
           K D        NFH
Sbjct: 415 KADK-------NFH 421



 Score = 68.6 bits (166), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 52/147 (35%), Positives = 75/147 (51%), Gaps = 6/147 (4%)

Query: 65  DVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKR-VEGLDQVNVCA 123
           +V +++AG   SLA+T +G VWAWG N   QLG G          P R   G+    V A
Sbjct: 275 NVVAIAAGRAFSLALTRDGEVWAWGNNGVGQLGMGPHNGFVRDPLPVRAANGVPLKGVRA 334

Query: 124 AFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGH 183
             A+G  S A+ +DGS+  WG   RGQLG G    E          +   ++ ++ G  H
Sbjct: 335 ITANGRHSLALMNDGSVLAWGAGDRGQLGQGAQNHE----DHPTLASLHSVICLAAGRYH 390

Query: 184 ALAQTEDGKLFGWGYSADGRIGNLGKA 210
           +LA  E+G +  WG +  G++G +GKA
Sbjct: 391 SLAVAENGAVLAWGDNQKGQLG-IGKA 416



 Score = 43.9 bits (102), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 29/72 (40%), Positives = 38/72 (52%), Gaps = 7/72 (9%)

Query: 28  AVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWA 87
           +V+++G G +G LG        G   +E          V  ++AG YHSLAV  NGAV A
Sbjct: 350 SVLAWGAGDRGQLGQ-------GAQNHEDHPTLASLHSVICLAAGRYHSLAVAENGAVLA 402

Query: 88  WGRNNEVQLGRG 99
           WG N + QLG G
Sbjct: 403 WGDNQKGQLGIG 414


>gi|259089405|ref|NP_001158608.1| probable E3 ubiquitin-protein ligase HERC6 isoform 2 [Homo sapiens]
 gi|55832764|gb|AAV66895.1| HERC6 splice variant [Homo sapiens]
          Length = 986

 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 85/270 (31%), Positives = 128/270 (47%), Gaps = 45/270 (16%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTR-VPGLPSDVTSVSAGHYHSLAVTNNGAVWA 87
           V+S GD S+G LG         G+  EP + +  L  D+  VS G  HSLAV + G V+A
Sbjct: 44  VLSCGDNSRGQLG---RRGAQRGELPEPIQALETLIVDL--VSCGKEHSLAVCHKGRVFA 98

Query: 88  WGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSK 147
           WG  +E QLG G  E +     PK++  L+ + +         S A+  D  ++ WGK+ 
Sbjct: 99  WGAGSEGQLGIG--EFKEISFTPKKIMTLNDIKIIQVSCGHYHSLALSKDSQVFSWGKNS 156

Query: 148 RGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNL 207
            GQLGLGK+      P RV +L G  + +V+ G  H+ A +  G  FGWG ++ G++   
Sbjct: 157 HGQLGLGKEFPSQASPQRVRSLEGIPLAQVAAGGAHSFALSLCGTSFGWGSNSAGQLALS 216

Query: 208 GKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVV 267
           G+ +   P+ SN                    K +S G               ++ + VV
Sbjct: 217 GRNV---PVQSN--------------------KPLSVGA--------------LKNLGVV 239

Query: 268 DIACGFDHSLVLGRNGVLLSCGSNVYGQLG 297
            I+CG  H+ VL ++G + + G N  GQLG
Sbjct: 240 YISCGDAHTAVLTQDGKVFTFGDNRSGQLG 269



 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 90/328 (27%), Positives = 143/328 (43%), Gaps = 53/328 (16%)

Query: 50  GGDAYE--PTRVPGLP-SDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRAT 106
           G D+ E    R  G P +++   ++G  HSL +  N  V + G N+  QLGR   + R  
Sbjct: 6   GADSRELQRRRTAGSPGAELLQAASGERHSLLLLTNHRVLSCGDNSRGQLGRRGAQ-RGE 64

Query: 107 WNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRV 166
             +P  ++ L+ + V         S A+   G ++ WG    GQLG+G+    +  P ++
Sbjct: 65  LPEP--IQALETLIVDLVSCGKEHSLAVCHKGRVFAWGAGSEGQLGIGEFKEISFTPKKI 122

Query: 167 EALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSES 226
             L   KI++VS G  H+LA ++D ++F WG ++ G++G LGK             S  S
Sbjct: 123 MTLNDIKIIQVSCGHYHSLALSKDSQVFSWGKNSHGQLG-LGKEFP----------SQAS 171

Query: 227 DQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLL 286
            Q + S                            +EG+ +  +A G  HS  L   G   
Sbjct: 172 PQRVRS----------------------------LEGIPLAQVAAGGAHSFALSLCGTSF 203

Query: 287 SCGSNVYGQLGREKQDMGMFPVDINFHPVSISS--GLGHSLAICEVRSSNVTGGARGIVS 344
             GSN  GQL    +++   PV  N  P+S+ +   LG     C    + V      + +
Sbjct: 204 GWGSNSAGQLALSGRNV---PVQSN-KPLSVGALKNLGVVYISCGDAHTAVLTQDGKVFT 259

Query: 345 WGWNRSSQLGRM-GPDNV-PLVVEGLEG 370
           +G NRS QLG    P+   P +VE ++G
Sbjct: 260 FGDNRSGQLGYSPTPEKRGPQLVERIDG 287



 Score = 48.9 bits (115), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 48/179 (26%), Positives = 75/179 (41%), Gaps = 12/179 (6%)

Query: 24  ASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRV---PGLPSDVTSVSAGHYHSLAVT 80
           +  + V S+G  S G LGL             P RV    G+P  +  V+AG  HS A++
Sbjct: 144 SKDSQVFSWGKNSHGQLGLGKEFPSQAS----PQRVRSLEGIP--LAQVAAGGAHSFALS 197

Query: 81  NNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSL 140
             G  + WG N+  QL           N P  V  L  + V         ++ +  DG +
Sbjct: 198 LCGTSFGWGSNSAGQLALSGRNVPVQSNKPLSVGALKNLGVVYISCGDAHTAVLTQDGKV 257

Query: 141 WVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTE-DGKLFGWGY 198
           + +G ++ GQLG      E   P  VE + G  + ++  G  H LA     G++  +G+
Sbjct: 258 FTFGDNRSGQLGYS-PTPEKRGPQLVERIDG-LVSQIDCGSYHTLAYVHTTGQVVSFGH 314


>gi|348512897|ref|XP_003443979.1| PREDICTED: secretion-regulating guanine nucleotide exchange
           factor-like [Oreochromis niloticus]
          Length = 393

 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 90/286 (31%), Positives = 124/286 (43%), Gaps = 30/286 (10%)

Query: 59  VPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRN----NEVQLGRGALESRATWNDPKRVE 114
           V  L   V SV+AG  HSLAVT +G V+ WG       +  L   A+ S      P  V 
Sbjct: 130 VESLMEPVVSVAAGLRHSLAVTGSGCVYQWGTGLFSYAKRALSPHAVPSHFNSKVPCLVP 189

Query: 115 GLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKI 174
           GLDQ       A       +  DG L++WG +K GQL   +    +    +   L GEK+
Sbjct: 190 GLDQRISHRVTAGSAHCVCLTGDGDLFLWGSNKHGQLTTTESFLSSPTLLKRSLLDGEKV 249

Query: 175 VKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSST 234
           + V  GW H +AQTE G++F WG    G  G LG+          I  S +++Q+ +   
Sbjct: 250 INVWSGWTHIVAQTESGRVFTWGR---GNYGQLGR---------QISASEDTEQQPAGP- 296

Query: 235 IEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYG 294
                  V++G  +E  +P   E           I CG +H+L     G LLS G N +G
Sbjct: 297 -------VAQGGTQEVGLPAEVENLR----GATQICCGSEHNLA-SVGGSLLSWGWNEHG 344

Query: 295 QLGREKQDMGMFPVDI-NFHPVSISSGLGHSLAICEVRSSNVTGGA 339
             G   Q     P  +    PV I  G GHS+A+C   +   T  A
Sbjct: 345 MCGDGSQANVFLPQLVPGLRPVLIGCGAGHSMAVCAATTGTETNSA 390



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 89/351 (25%), Positives = 141/351 (40%), Gaps = 67/351 (19%)

Query: 66  VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAF 125
           V ++S G  HS+ +T +G V+  G+NN  QLG G     +T            +  C   
Sbjct: 34  VRAISGGGGHSVVITESGEVFVCGQNNRGQLGLGHSADIST------------LQHCPIL 81

Query: 126 ASGVVSSAIG--------DDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKV 177
              V   A G        D G L   G +  GQLG+G+ +T +     VE+L  E +V V
Sbjct: 82  NQRVTDIACGWDFTLLLTDGGQLLACGSNVFGQLGVGQTVTHSADLLVVESLM-EPVVSV 140

Query: 178 SFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSES-----DQEISS 232
           + G  H+LA T  G ++ WG    G      +AL    + S+ +          DQ IS 
Sbjct: 141 AAGLRHSLAVTGSGCVYQWG---TGLFSYAKRALSPHAVPSHFNSKVPCLVPGLDQRISH 197

Query: 233 STIEKAQKLVSEGMEKEKYM------------------PIIWEPFLVEGVEVVDIACGFD 274
                +   V    + + ++                  P + +  L++G +V+++  G+ 
Sbjct: 198 RVTAGSAHCVCLTGDGDLFLWGSNKHGQLTTTESFLSSPTLLKRSLLDGEKVINVWSGWT 257

Query: 275 HSLVLGRNGVLLSCGSNVYGQLGR--------EKQDMGMFPV------DINFHPVSISSG 320
           H +    +G + + G   YGQLGR        E+Q  G  PV      ++   P  + + 
Sbjct: 258 HIVAQTESGRVFTWGRGNYGQLGRQISASEDTEQQPAG--PVAQGGTQEVGL-PAEVENL 314

Query: 321 LGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPDNV--PLVVEGLE 369
            G +  IC     N+      ++SWGWN     G     NV  P +V GL 
Sbjct: 315 RG-ATQICCGSEHNLASVGGSLLSWGWNEHGMCGDGSQANVFLPQLVPGLR 364



 Score = 43.5 bits (101), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 64/276 (23%), Positives = 104/276 (37%), Gaps = 63/276 (22%)

Query: 89  GRNNEVQLGRGALESRATWNDPK--RVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKS 146
           G N+  QL +G +E +A+   P+   +  L    V A    G  S  I + G ++V G++
Sbjct: 3   GANSYGQLSQGHVEDQAS---PRLSNIAALQNRPVRAISGGGGHSVVITESGEVFVCGQN 59

Query: 147 KRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGN 206
            RGQLGLG   +  I   +   +  +++  ++ GW   L  T+ G+L   G +  G++G 
Sbjct: 60  NRGQLGLGH--SADISTLQHCPILNQRVTDIACGWDFTLLLTDGGQLLACGSNVFGQLG- 116

Query: 207 LGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEV 266
                                  +  +    A  LV E +          EP       V
Sbjct: 117 -----------------------VGQTVTHSADLLVVESL---------MEP-------V 137

Query: 267 VDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFHPVSISSGLGHSLA 326
           V +A G  HSL +  +G +   G+ ++    R      + P   N     +  GL   + 
Sbjct: 138 VSVAAGLRHSLAVTGSGCVYQWGTGLFSYAKRALSPHAV-PSHFNSKVPCLVPGLDQRI- 195

Query: 327 ICEVRSSNVTGGARGIVS---------WGWNRSSQL 353
                S  VT G+   V          WG N+  QL
Sbjct: 196 -----SHRVTAGSAHCVCLTGDGDLFLWGSNKHGQL 226


>gi|91202109|emb|CAJ75169.1| hypothetical protein kuste4407 [Candidatus Kuenenia
           stuttgartiensis]
          Length = 1590

 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 97/318 (30%), Positives = 151/318 (47%), Gaps = 50/318 (15%)

Query: 56  PTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEG 115
           P ++ GL SD+ S++ G YHS+A+ ++G VWA+GRN+  QLG G    R   N P +V G
Sbjct: 655 PVQISGL-SDIISIACGMYHSIALKSDGTVWAFGRNDYGQLGDGTNVYR---NKPVQVSG 710

Query: 116 LDQVNVCAAFASGVVSS-AIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKI 174
           L  V    A A G     A+  DG +W WG ++ GQLG G   T    P +V +++   +
Sbjct: 711 LSDV---IAIAGGDYHCLALKSDGIVWAWGNNESGQLGDGT-TTNRNTPVQVSSIS--NV 764

Query: 175 VKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSST 234
             ++ GW H+LA   D  ++ WG +  G++G+      ++P++     +  +       T
Sbjct: 765 AAIARGWVHSLALKSDETVWAWGSNGSGQLGDGTTTNRTTPVNITNINNIIAIAGGGGYT 824

Query: 235 IEKAQKLVSEGM----------EKEKYMPIIW------EPFLVEGV-EVVDIACGFDHSL 277
           I     L S+G             E      W       P  V G+ +VV +A G+ H +
Sbjct: 825 I----ALKSDGTGWTCGEYGWDYSENNGSSYWGYSYRTTPDQVAGINDVVAVAGGWQHIV 880

Query: 278 VLGRNGVLLSCGSNVYGQLGREKQDMGMFP--VDIN-------FHP---VSISSGLGH-- 323
           VL ++G + + G N YGQLG         P  VDIN       F P   +SI+SG+ +  
Sbjct: 881 VLKQDGTVWTWGVNWYGQLGDGTTTDRDTPVQVDINLGEMPDTFPPEGSISINSGVSYTN 940

Query: 324 ----SLAICEVRSSNVTG 337
               +L +    ++ VTG
Sbjct: 941 STSVTLTLSATDATGVTG 958



 Score = 87.8 bits (216), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 81/289 (28%), Positives = 133/289 (46%), Gaps = 63/289 (21%)

Query: 69  VSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASG 128
           ++AG  HSLA+ +NG VWAWG N + QLG    ++R     P +V  ++ +      AS 
Sbjct: 567 IAAGARHSLALKSNGTVWAWGNNGDGQLGDETTKNRTI---PAQVSNVNAITTIDGGASH 623

Query: 129 VVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQT 188
             S A+  DG++WVWG +  GQLG G + T    P ++  L+   I+ ++ G  H++A  
Sbjct: 624 --SLALKSDGTVWVWGANWDGQLGDGTN-TRKTTPVQISGLS--DIISIACGMYHSIALK 678

Query: 189 EDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEK 248
            DG ++ +G +  G++G+           +N+ R+                         
Sbjct: 679 SDGTVWAFGRNDYGQLGD----------GTNVYRN------------------------- 703

Query: 249 EKYMPIIWEPFLVEGV-EVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFP 307
                   +P  V G+ +V+ IA G  H L L  +G++ + G+N  GQLG         P
Sbjct: 704 --------KPVQVSGLSDVIAIAGGDYHCLALKSDGIVWAWGNNESGQLGDGTTTNRNTP 755

Query: 308 VDIN--FHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLG 354
           V ++   +  +I+ G  HSLA+    +         + +WG N S QLG
Sbjct: 756 VQVSSISNVAAIARGWVHSLALKSDET---------VWAWGSNGSGQLG 795



 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 52/169 (30%), Positives = 91/169 (53%), Gaps = 16/169 (9%)

Query: 55  EPTRVPGLPSDVTSVSA------GHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWN 108
           E T+   +P+ V++V+A      G  HSLA+ ++G VW WG N + QLG G    + T  
Sbjct: 597 ETTKNRTIPAQVSNVNAITTIDGGASHSLALKSDGTVWVWGANWDGQLGDGTNTRKTT-- 654

Query: 109 DPKRVEGLDQVNVCAAFASGVVSS-AIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVE 167
            P ++ GL  +    + A G+  S A+  DG++W +G++  GQLG G ++     P +V 
Sbjct: 655 -PVQISGLSDI---ISIACGMYHSIALKSDGTVWAFGRNDYGQLGDGTNVYRN-KPVQVS 709

Query: 168 ALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPL 216
            L+   ++ ++ G  H LA   DG ++ WG +  G++G+      ++P+
Sbjct: 710 GLS--DVIAIAGGDYHCLALKSDGIVWAWGNNESGQLGDGTTTNRNTPV 756



 Score = 58.2 bits (139), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 55/195 (28%), Positives = 89/195 (45%), Gaps = 31/195 (15%)

Query: 176 KVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLD-SNIDRSSESDQEISSST 234
           K++ G  H+LA   +G ++ WG + DG++G+      + P   SN++  +  D   S S 
Sbjct: 566 KIAAGARHSLALKSNGTVWAWGNNGDGQLGDETTKNRTIPAQVSNVNAITTIDGGASHSL 625

Query: 235 IEKAQKLV-----------SEGMEKEKYMPIIWEPFLVEGV-EVVDIACGFDHSLVLGRN 282
             K+   V            +G    K  P+      + G+ +++ IACG  HS+ L  +
Sbjct: 626 ALKSDGTVWVWGANWDGQLGDGTNTRKTTPV-----QISGLSDIISIACGMYHSIALKSD 680

Query: 283 GVLLSCGSNVYGQLGREKQDMGMFPVDIN--FHPVSISSGLGHSLAICEVRSSNVTGGAR 340
           G + + G N YGQLG         PV ++     ++I+ G  H LA+           + 
Sbjct: 681 GTVWAFGRNDYGQLGDGTNVYRNKPVQVSGLSDVIAIAGGDYHCLAL----------KSD 730

Query: 341 GIV-SWGWNRSSQLG 354
           GIV +WG N S QLG
Sbjct: 731 GIVWAWGNNESGQLG 745


>gi|426344974|ref|XP_004039178.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC6 [Gorilla
           gorilla gorilla]
          Length = 982

 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 85/270 (31%), Positives = 128/270 (47%), Gaps = 45/270 (16%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTR-VPGLPSDVTSVSAGHYHSLAVTNNGAVWA 87
           V+S GD S+G LG         G+  EP + +  L  D+  VS G  HSLAV + G V+A
Sbjct: 44  VLSCGDNSRGQLG---RRGAQRGELPEPIQALETLIVDL--VSCGKEHSLAVCHKGRVFA 98

Query: 88  WGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSK 147
           WG  +E QLG G  E +     PK++  L+ + +         S A+  D  ++ WGK+ 
Sbjct: 99  WGAGSEGQLGIG--EFKEISFTPKKITTLNGIKIIQVSCGHYHSLALSKDSQVFSWGKNS 156

Query: 148 RGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNL 207
            GQLGLGK+      P RV +L G  + +V+ G  H+ A +  G  FGWG ++ G++   
Sbjct: 157 HGQLGLGKEFPSQASPQRVRSLEGIPLAQVAAGGTHSFALSLCGTSFGWGSNSAGQLALS 216

Query: 208 GKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVV 267
           G+ +   P  SN                    K +S G               ++ + VV
Sbjct: 217 GRNV---PAQSN--------------------KPLSIGA--------------LKNLGVV 239

Query: 268 DIACGFDHSLVLGRNGVLLSCGSNVYGQLG 297
            I+CG +H+ VL ++G + + G N  GQLG
Sbjct: 240 YISCGDEHTAVLTQDGKVFTFGDNCSGQLG 269



 Score = 82.4 bits (202), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 87/318 (27%), Positives = 138/318 (43%), Gaps = 51/318 (16%)

Query: 58  RVPGLP-SDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGL 116
           R  G P +++   ++G  HSL +  N  V + G N+  QLGR   + R    +P  ++ L
Sbjct: 16  RTAGSPGAELLQAASGERHSLLLLTNHRVLSCGDNSRGQLGRRGAQ-RGELPEP--IQAL 72

Query: 117 DQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVK 176
           + + V         S A+   G ++ WG    GQLG+G+    +  P ++  L G KI++
Sbjct: 73  ETLIVDLVSCGKEHSLAVCHKGRVFAWGAGSEGQLGIGEFKEISFTPKKITTLNGIKIIQ 132

Query: 177 VSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIE 236
           VS G  H+LA ++D ++F WG ++ G++G LGK             S  S Q + S    
Sbjct: 133 VSCGHYHSLALSKDSQVFSWGKNSHGQLG-LGKEFP----------SQASPQRVRS---- 177

Query: 237 KAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQL 296
                                   +EG+ +  +A G  HS  L   G     GSN  GQL
Sbjct: 178 ------------------------LEGIPLAQVAAGGTHSFALSLCGTSFGWGSNSAGQL 213

Query: 297 GREKQDMGMFPVDINFHPVSISS--GLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLG 354
               +++   P   N  P+SI +   LG     C    + V      + ++G N S QLG
Sbjct: 214 ALSGRNV---PAQSN-KPLSIGALKNLGVVYISCGDEHTAVLTQDGKVFTFGDNCSGQLG 269

Query: 355 RM-GPDNV-PLVVEGLEG 370
               P+   P +VE ++G
Sbjct: 270 YSPTPEKRGPQLVERIDG 287



 Score = 47.4 bits (111), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 53/204 (25%), Positives = 81/204 (39%), Gaps = 16/204 (7%)

Query: 24  ASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRV---PGLPSDVTSVSAGHYHSLAVT 80
           +  + V S+G  S G LGL             P RV    G+P  +  V+AG  HS A++
Sbjct: 144 SKDSQVFSWGKNSHGQLGLGKEFPSQAS----PQRVRSLEGIP--LAQVAAGGTHSFALS 197

Query: 81  NNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSL 140
             G  + WG N+  QL        A  N P  +  L  + V         ++ +  DG +
Sbjct: 198 LCGTSFGWGSNSAGQLALSGRNVPAQSNKPLSIGALKNLGVVYISCGDEHTAVLTQDGKV 257

Query: 141 WVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTE-DGKLFGWGYS 199
           + +G +  GQLG      E   P  VE + G  + ++  G  H LA     G++  +G+ 
Sbjct: 258 FTFGDNCSGQLGYS-PTPEKRGPQLVERIDG-LVSQIDCGSYHTLAYVHTTGQVVSFGHG 315

Query: 200 ADGRIGNLGKALESSPLDSNIDRS 223
                 +  K      L  N D S
Sbjct: 316 P----SDTSKPTHPEALTENFDIS 335


>gi|444915451|ref|ZP_21235583.1| BNR repeat domain protein [Cystobacter fuscus DSM 2262]
 gi|444713382|gb|ELW54282.1| BNR repeat domain protein [Cystobacter fuscus DSM 2262]
          Length = 746

 Score =  102 bits (255), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 106/329 (32%), Positives = 157/329 (47%), Gaps = 44/329 (13%)

Query: 56  PTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEG 115
           P  +PGL + V +++AG YHSLAV  NG V AWG N   QLG G+   R     P  V  
Sbjct: 388 PVGLPGL-TGVAALAAGGYHSLAVLANGTVRAWGHNTYGQLGDGSTAQRTA---PVVVPA 443

Query: 116 LDQ-VNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKI 174
           L   V++ A +     S A+  DG++  WG +  GQLG G    +   P +V  L    +
Sbjct: 444 LTGVVSLTAGYDH---SLALLSDGTVRAWGNNASGQLGDGT-TNQRGTPVQVSGL--TNV 497

Query: 175 VKVSFG-WGHALAQTEDGKLFGWGYSADGRIGNLGKALESSP-----LDSNIDRSSESDQ 228
           V +S G   HALA   DG +  WGY+ +G++G+   +   +P     L + +  ++  D 
Sbjct: 498 VALSGGKLYHALALLSDGTVRAWGYNMNGQLGDGSTSNRWTPVAVSGLTNVVAIAAGGDY 557

Query: 229 EI---SSSTIEKAQKLV--SEGMEKEKYMPIIWEPFLVEGV-EVVDIACGFDHSLVLGRN 282
            +   S+ T++     V    G + + Y P    P  V GV  VV IA G +H L L  +
Sbjct: 558 SLALQSNGTVQSWGYGVYGPLGRDYDTYSP---TPKAVPGVTNVVAIAAGANHVLALRAD 614

Query: 283 GVLLSCGSNVYGQLGREKQDMGMFPVDIN--FHPVSISSGLGHSLAICEVRSSNVTGGAR 340
           G + + G N +GQLG         PV +    + V+I++G  HSLA+   R+        
Sbjct: 615 GTVYAWGRNDFGQLGDGTTVQRNTPVQVPGLTNVVAIATGWDHSLAL---RADGT----- 666

Query: 341 GIVSWGWNRSSQLG-------RMGPDNVP 362
            + +WG+N + QLG       R  P  VP
Sbjct: 667 -VYAWGYNYARQLGDGSTANYRQTPAPVP 694



 Score =  102 bits (253), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 116/359 (32%), Positives = 168/359 (46%), Gaps = 45/359 (12%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAW 88
           V ++GD + G LG  T+          PT VPGL   V +VSAG  +SLA+  +G V AW
Sbjct: 66  VRAWGDNASGQLGDGTTT-----QRSSPTAVPGLAGAV-AVSAGGEYSLALLGDGTVRAW 119

Query: 89  GRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKR 148
           G N   QLG G    RA+   P  V GL  V   AA  +  +  A+  DG++  WG +  
Sbjct: 120 GNNTYGQLGDGTTPHRAS---PGAVPGLSGVVAIAAGNNHAL--ALLSDGTVRAWGYNAY 174

Query: 149 GQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLG 208
           GQLG G   T+   P  V  L G  +V ++ G  H+LA   DG +  WG +  GR+G+  
Sbjct: 175 GQLGDGT-TTQRRTPVAVLGLTG--VVAIAAGENHSLAVLADGTVRAWGNNTYGRLGDGT 231

Query: 209 KALESSP-LDSNID-------RSSESDQEISSSTIE----KAQKLVSEGMEKEKYMPIIW 256
               +SP L S++         ++ S   ++  T+      A   + +G   ++  P+  
Sbjct: 232 TTQRTSPVLVSSLTGVTAIAAGANHSLAVLADGTVRAWGYNASGRLGDGTTTQRATPVA- 290

Query: 257 EPFLVEGVE-VVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFHP- 314
               V G+  V +I+ G  HSL L  +G   + GSNV GQLG         PV ++    
Sbjct: 291 ----VPGLTGVTEISAGGGHSLALLADGTARAWGSNVSGQLGDGTVSNRTSPVLVSSLTG 346

Query: 315 -VSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQL--GRMGPDNVPLVVEGLEG 370
             ++S+G  HSLA+         G AR   +WG N S QL  G      +P+ + GL G
Sbjct: 347 VTALSAGGNHSLALLA------DGTAR---AWGANVSGQLGDGTTTQRTLPVGLPGLTG 396



 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 104/338 (30%), Positives = 152/338 (44%), Gaps = 37/338 (10%)

Query: 51  GDAYEPTR-----VPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRA 105
           GD   P R     VPGL S V +++AG+ H+LA+ ++G V AWG N   QLG G    R 
Sbjct: 128 GDGTTPHRASPGAVPGL-SGVVAIAAGNNHALALLSDGTVRAWGYNAYGQLGDGTTTQRR 186

Query: 106 TWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSR 165
           T   P  V GL  V   AA  +   S A+  DG++  WG +  G+LG G   T+   P  
Sbjct: 187 T---PVAVLGLTGVVAIAAGEN--HSLAVLADGTVRAWGNNTYGRLGDGT-TTQRTSPVL 240

Query: 166 VEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLD-------S 218
           V +L G  +  ++ G  H+LA   DG +  WGY+A GR+G+      ++P+        +
Sbjct: 241 VSSLTG--VTAIAAGANHSLAVLADGTVRAWGYNASGRLGDGTTTQRATPVAVPGLTGVT 298

Query: 219 NIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVE-VVDIACGFDHSL 277
            I         + +    +A      G   +  +     P LV  +  V  ++ G +HSL
Sbjct: 299 EISAGGGHSLALLADGTARAWGSNVSGQLGDGTVSNRTSPVLVSSLTGVTALSAGGNHSL 358

Query: 278 VLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDIN--FHPVSISSGLGHSLAICEVRSSNV 335
            L  +G   + G+NV GQLG         PV +       ++++G  HSLA+        
Sbjct: 359 ALLADGTARAWGANVSGQLGDGTTTQRTLPVGLPGLTGVAALAAGGYHSLAVL------- 411

Query: 336 TGGARGIV-SWGWNRSSQL--GRMGPDNVPLVVEGLEG 370
              A G V +WG N   QL  G       P+VV  L G
Sbjct: 412 ---ANGTVRAWGHNTYGQLGDGSTAQRTAPVVVPALTG 446



 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 96/321 (29%), Positives = 148/321 (46%), Gaps = 38/321 (11%)

Query: 66  VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAF 125
           VT+++AG  HSLAV  +G V AWG N   +LG G    RAT   P  V GL  V   +  
Sbjct: 247 VTAIAAGANHSLAVLADGTVRAWGYNASGRLGDGTTTQRAT---PVAVPGLTGVTEIS-- 301

Query: 126 ASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHAL 185
           A G  S A+  DG+   WG +  GQLG G  ++    P  V +L G  +  +S G  H+L
Sbjct: 302 AGGGHSLALLADGTARAWGSNVSGQLGDGT-VSNRTSPVLVSSLTG--VTALSAGGNHSL 358

Query: 186 AQTEDGKLFGWGYSADGRIGNLGKALESSPLD--------SNIDRSSESDQEISSSTI-- 235
           A   DG    WG +  G++G+      + P+         +       S   +++ T+  
Sbjct: 359 ALLADGTARAWGANVSGQLGDGTTTQRTLPVGLPGLTGVAALAAGGYHSLAVLANGTVRA 418

Query: 236 --EKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVY 293
                   + +G   ++  P++  P L     VV +  G+DHSL L  +G + + G+N  
Sbjct: 419 WGHNTYGQLGDGSTAQRTAPVV-VPAL---TGVVSLTAGYDHSLALLSDGTVRAWGNNAS 474

Query: 294 GQLGREKQDMGMFPVDIN--FHPVSISSG-LGHSLAICEVRSSNVTGGARGIVSWGWNRS 350
           GQLG    +    PV ++   + V++S G L H+LA+    +         + +WG+N +
Sbjct: 475 GQLGDGTTNQRGTPVQVSGLTNVVALSGGKLYHALALLSDGT---------VRAWGYNMN 525

Query: 351 SQLGRMGPDN--VPLVVEGLE 369
            QLG     N   P+ V GL 
Sbjct: 526 GQLGDGSTSNRWTPVAVSGLT 546



 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 94/308 (30%), Positives = 134/308 (43%), Gaps = 67/308 (21%)

Query: 69  VSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASG 128
           +++G  HSL  T +G V AWG N   QLG G    R++   P  V GL      A  A G
Sbjct: 50  LASGKAHSLLATPDGTVRAWGDNASGQLGDGTTTQRSS---PTAVPGL--AGAVAVSAGG 104

Query: 129 VVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQT 188
             S A+  DG++  WG +  GQLG G     A  P  V  L+G  +V ++ G  HALA  
Sbjct: 105 EYSLALLGDGTVRAWGNNTYGQLGDGTTPHRA-SPGAVPGLSG--VVAIAAGNNHALALL 161

Query: 189 EDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEK 248
            DG +  WGY+A G++G                                      +G   
Sbjct: 162 SDGTVRAWGYNAYGQLG--------------------------------------DGTTT 183

Query: 249 EKYMPIIWEPFLVEGVE-VVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFP 307
           ++  P+      V G+  VV IA G +HSL +  +G + + G+N YG+LG         P
Sbjct: 184 QRRTPVA-----VLGLTGVVAIAAGENHSLAVLADGTVRAWGNNTYGRLGDGTTTQRTSP 238

Query: 308 VDINFHP--VSISSGLGHSLAICEVRSSNVTGGARGIV-SWGWNRSSQL--GRMGPDNVP 362
           V ++      +I++G  HSLA+           A G V +WG+N S +L  G       P
Sbjct: 239 VLVSSLTGVTAIAAGANHSLAVL----------ADGTVRAWGYNASGRLGDGTTTQRATP 288

Query: 363 LVVEGLEG 370
           + V GL G
Sbjct: 289 VAVPGLTG 296



 Score = 80.5 bits (197), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 98/369 (26%), Positives = 153/369 (41%), Gaps = 85/369 (23%)

Query: 9   HNHVNVLTSRIFMRSASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTS 68
           ++H   L S   +R+    A    GDG+    G P  ++G+              ++V +
Sbjct: 454 YDHSLALLSDGTVRAWGNNASGQLGDGTTNQRGTPVQVSGL--------------TNVVA 499

Query: 69  VSAGH-YHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFAS 127
           +S G  YH+LA+ ++G V AWG N   QLG G+  +R T   P  V GL   NV A  A 
Sbjct: 500 LSGGKLYHALALLSDGTVRAWGYNMNGQLGDGSTSNRWT---PVAVSGL--TNVVAIAAG 554

Query: 128 GVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQ 187
           G  S A+  +G++  WG    G LG   D T +  P  V  +    +V ++ G  H LA 
Sbjct: 555 GDYSLALQSNGTVQSWGYGVYGPLGRDYD-TYSPTPKAVPGV--TNVVAIAAGANHVLAL 611

Query: 188 TEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGME 247
             DG ++ WG +  G++G+                          +T+++   +   G+ 
Sbjct: 612 RADGTVYAWGRNDFGQLGD-------------------------GTTVQRNTPVQVPGL- 645

Query: 248 KEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLG-----REKQD 302
                             VV IA G+DHSL L  +G + + G N   QLG       +Q 
Sbjct: 646 ----------------TNVVAIATGWDHSLALRADGTVYAWGYNYARQLGDGSTANYRQT 689

Query: 303 MGMFPVDINFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGR---MGPD 359
               P   N   V++++G   SLA+           +  + +WG N   +LG    + P 
Sbjct: 690 PAPVPGLTNV--VAVTAGGNQSLALLS---------SGAVHAWGDNSHGELGNGSTLTPP 738

Query: 360 NVPLVVEGL 368
             P+ V GL
Sbjct: 739 -APVAVTGL 746



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 61/211 (28%), Positives = 90/211 (42%), Gaps = 22/211 (10%)

Query: 155 KDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESS 214
           KD  EA V +R       + V+++ G  H+L  T DG +  WG +A G++G+      SS
Sbjct: 29  KDAAEA-VQARPLRSGSPRAVRLASGKAHSLLATPDGTVRAWGDNASGQLGDGTTTQRSS 87

Query: 215 PL-------DSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVE-V 266
           P           +    E    +      +A    + G   +   P    P  V G+  V
Sbjct: 88  PTAVPGLAGAVAVSAGGEYSLALLGDGTVRAWGNNTYGQLGDGTTPHRASPGAVPGLSGV 147

Query: 267 VDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDI--NFHPVSISSGLGHS 324
           V IA G +H+L L  +G + + G N YGQLG         PV +      V+I++G  HS
Sbjct: 148 VAIAAGNNHALALLSDGTVRAWGYNAYGQLGDGTTTQRRTPVAVLGLTGVVAIAAGENHS 207

Query: 325 LAICEVRSSNVTGGARGIV-SWGWNRSSQLG 354
           LA+           A G V +WG N   +LG
Sbjct: 208 LAVL----------ADGTVRAWGNNTYGRLG 228


>gi|119626423|gb|EAX06018.1| hect domain and RLD 6, isoform CRA_a [Homo sapiens]
          Length = 385

 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 86/270 (31%), Positives = 128/270 (47%), Gaps = 45/270 (16%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTR-VPGLPSDVTSVSAGHYHSLAVTNNGAVWA 87
           V+S GD S+G LG   +  G   +  EP + +  L  D+  VS G  HSLAV + G V+A
Sbjct: 44  VLSCGDNSRGQLGRRGAQRG---ELPEPIQALETLIVDL--VSCGKEHSLAVCHKGRVFA 98

Query: 88  WGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSK 147
           WG  +E QLG G  E +     PK++  L+ + +         S A+  D  ++ WGK+ 
Sbjct: 99  WGAGSEGQLGIG--EFKEISFTPKKIMTLNDIKIIQVSCGHYHSLALSKDSQVFSWGKNS 156

Query: 148 RGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNL 207
            GQLGLGK+      P RV +L G  + +V+ G  H+ A +  G  FGWG ++ G++   
Sbjct: 157 HGQLGLGKEFPSQASPQRVRSLEGIPLAQVAAGGAHSFALSLCGTSFGWGSNSAGQLALS 216

Query: 208 GKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVV 267
           G+ +   P+ SN                    K +S G  K               + VV
Sbjct: 217 GRNV---PVQSN--------------------KPLSVGALKN--------------LGVV 239

Query: 268 DIACGFDHSLVLGRNGVLLSCGSNVYGQLG 297
            I+CG  H+ VL ++G + + G N  GQLG
Sbjct: 240 YISCGDAHTAVLTQDGKVFTFGDNRSGQLG 269



 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 87/318 (27%), Positives = 139/318 (43%), Gaps = 51/318 (16%)

Query: 58  RVPGLP-SDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGL 116
           R  G P +++   ++G  HSL +  N  V + G N+  QLGR   + R    +P  ++ L
Sbjct: 16  RTAGSPGAELLQAASGERHSLLLLTNHRVLSCGDNSRGQLGRRGAQ-RGELPEP--IQAL 72

Query: 117 DQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVK 176
           + + V         S A+   G ++ WG    GQLG+G+    +  P ++  L   KI++
Sbjct: 73  ETLIVDLVSCGKEHSLAVCHKGRVFAWGAGSEGQLGIGEFKEISFTPKKIMTLNDIKIIQ 132

Query: 177 VSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIE 236
           VS G  H+LA ++D ++F WG ++ G++G LGK             S  S Q + S    
Sbjct: 133 VSCGHYHSLALSKDSQVFSWGKNSHGQLG-LGKEFP----------SQASPQRVRS---- 177

Query: 237 KAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQL 296
                                   +EG+ +  +A G  HS  L   G     GSN  GQL
Sbjct: 178 ------------------------LEGIPLAQVAAGGAHSFALSLCGTSFGWGSNSAGQL 213

Query: 297 GREKQDMGMFPVDINFHPVSISS--GLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLG 354
               +++   PV  N  P+S+ +   LG     C    + V      + ++G NRS QLG
Sbjct: 214 ALSGRNV---PVQSN-KPLSVGALKNLGVVYISCGDAHTAVLTQDGKVFTFGDNRSGQLG 269

Query: 355 RM-GPDNV-PLVVEGLEG 370
               P+   P +VE ++G
Sbjct: 270 YSPTPEKRGPQLVERIDG 287



 Score = 49.3 bits (116), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 53/201 (26%), Positives = 80/201 (39%), Gaps = 16/201 (7%)

Query: 27  TAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRV---PGLPSDVTSVSAGHYHSLAVTNNG 83
           + V S+G  S G LGL             P RV    G+P  +  V+AG  HS A++  G
Sbjct: 147 SQVFSWGKNSHGQLGLGKEFP----SQASPQRVRSLEGIP--LAQVAAGGAHSFALSLCG 200

Query: 84  AVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVW 143
             + WG N+  QL           N P  V  L  + V         ++ +  DG ++ +
Sbjct: 201 TSFGWGSNSAGQLALSGRNVPVQSNKPLSVGALKNLGVVYISCGDAHTAVLTQDGKVFTF 260

Query: 144 GKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTE-DGKLFGWGYSADG 202
           G ++ GQLG      E   P  VE + G  + ++  G  H LA     G++  +G+    
Sbjct: 261 GDNRSGQLGY-SPTPEKRGPQLVERIDG-LVSQIDCGSYHTLAYVHTTGQVVSFGHGPS- 317

Query: 203 RIGNLGKALESSPLDSNIDRS 223
              +  K      L  N D S
Sbjct: 318 ---DTSKPTHPEALTENFDIS 335


>gi|414870472|tpg|DAA49029.1| TPA: putative regulator of chromosome condensation (RCC1) family
           protein [Zea mays]
          Length = 469

 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 67/196 (34%), Positives = 98/196 (50%), Gaps = 34/196 (17%)

Query: 56  PTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEG 115
           P RV GL   V  ++ G +H+LA+T +G +WAWG N   QLG G  + R   + P RVEG
Sbjct: 241 PVRVQGL-EKVRVIAVGAFHNLALTEDGILWAWGNNEYGQLGTGDTQPR---SHPIRVEG 296

Query: 116 LDQVNVCAAFASGVVSSAIGDDGSL------------------------------WVWGK 145
           L  +++    A G  S+A+   G +                              + WG+
Sbjct: 297 LSDLSLVDIAAGGWHSTALTIQGEINSLPCYLFRACFKDVQIIKYQKYTYYTMKVYAWGR 356

Query: 146 SKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIG 205
            + G+LG G D +  +VP +VE LAGE IV+VS G  H++A T DG++F +G    GR+G
Sbjct: 357 GEHGRLGFGDDKSSRMVPLKVELLAGEDIVQVSCGGTHSVALTRDGRMFSYGRGDHGRLG 416

Query: 206 NLGKALESSPLDSNID 221
              K     P+  +ID
Sbjct: 417 YGRKLTTGQPMGVDID 432



 Score = 79.0 bits (193), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 75/259 (28%), Positives = 122/259 (47%), Gaps = 27/259 (10%)

Query: 66  VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAF 125
           V  V+AG  HS+ +T  G VW WG+        G ++  +T   P RV+GL++V V A  
Sbjct: 204 VRQVAAGGTHSVVLTQEGHVWTWGQ----PWPPGDIKQIST---PVRVQGLEKVRVIAVG 256

Query: 126 ASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHAL 185
           A    + A+ +DG LW WG ++ GQLG G D      P RVE L+   +V ++ G  H+ 
Sbjct: 257 A--FHNLALTEDGILWAWGNNEYGQLGTG-DTQPRSHPIRVEGLSDLSLVDIAAGGWHST 313

Query: 186 AQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEG 245
           A T  G++       +     L +A           + +    ++ +    +  +L    
Sbjct: 314 ALTIQGEI-------NSLPCYLFRACFKDVQIIKYQKYTYYTMKVYAWGRGEHGRLGFGD 366

Query: 246 MEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREK----- 300
            +  + +P+  E  L+ G ++V ++CG  HS+ L R+G + S G   +G+LG  +     
Sbjct: 367 DKSSRMVPLKVE--LLAGEDIVQVSCGGTHSVALTRDGRMFSYGRGDHGRLGYGRKLTTG 424

Query: 301 QDMGMFPVDINFHPVSISS 319
           Q MG   VDI+  P    S
Sbjct: 425 QPMG---VDIDLPPPKTRS 440



 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 97/340 (28%), Positives = 137/340 (40%), Gaps = 63/340 (18%)

Query: 89  GRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKR 148
           G   + QLG G  E +  W     VE L    V A  A    S AI +DG L+ WG ++R
Sbjct: 50  GSGEDGQLGMGGNEEK-DWAHC--VEALGSYAVTAVVAGSRNSLAICEDGRLFTWGWNQR 106

Query: 149 GQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWG-------YSAD 201
           G LG          P  V ALAG KIV+ + G  H LA  ++G  + WG       +S  
Sbjct: 107 GTLGHPPKTKTESSPGPVHALAGLKIVQAAIGGWHCLAVDDNGHAYAWGRGTRFPAFSVT 166

Query: 202 GRIGN-LGKALESSPLDSNIDRSSESDQEISSSTIEKAQ-KLVSEG------MEKEKY-- 251
           G  GN  G+  E      +  R+   D         K + + V+ G      + +E +  
Sbjct: 167 G--GNEYGQCGEEPERKEDGTRALRRDIPTPQRCAPKLKVRQVAAGGTHSVVLTQEGHVW 224

Query: 252 ----------MPIIWEPFLVEGVEVVD-IACGFDHSLVLGRNGVLLSCGSNVYGQLGREK 300
                     +  I  P  V+G+E V  IA G  H+L L  +G+L + G+N YGQLG   
Sbjct: 225 TWGQPWPPGDIKQISTPVRVQGLEKVRVIAVGAFHNLALTEDGILWAWGNNEYGQLGTGD 284

Query: 301 QDMGMFPVDI----NFHPVSISSGLGHSLAI----------CE-----------VRSSNV 335
                 P+ +    +   V I++G  HS A+          C            ++    
Sbjct: 285 TQPRSHPIRVEGLSDLSLVDIAAGGWHSTALTIQGEINSLPCYLFRACFKDVQIIKYQKY 344

Query: 336 TGGARGIVSWGWNRSSQLGRMGPDN----VPLVVEGLEGE 371
           T     + +WG     +LG  G D     VPL VE L GE
Sbjct: 345 TYYTMKVYAWGRGEHGRLG-FGDDKSSRMVPLKVELLAGE 383


>gi|156740286|ref|YP_001430415.1| regulator of chromosome condensation RCC1 [Roseiflexus castenholzii
           DSM 13941]
 gi|156231614|gb|ABU56397.1| regulator of chromosome condensation RCC1 [Roseiflexus castenholzii
           DSM 13941]
          Length = 792

 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 98/331 (29%), Positives = 146/331 (44%), Gaps = 34/331 (10%)

Query: 55  EPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVE 114
            P  V GL S VT+++AG  H+ A+T++G VW WG N   QLG G    R+T   P  V 
Sbjct: 313 TPVAVSGLASGVTAIAAGDSHTCALTSSGGVWCWGYNFFGQLGDGTTTDRST---PVAVS 369

Query: 115 GLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKI 174
           GL    V A  A    + A+   G +  WG++K GQLG G   T +  P  V  L    +
Sbjct: 370 GLGS-GVTAIAAGDFHTCALMSSGGVRCWGRNKDGQLGDGTTTTRS-TPVAVSGLV-SGV 426

Query: 175 VKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSP-----LDSNIDR----SSE 225
             ++ G  H  A+T  G +  WG +  G++G+      S+P     L S +       S 
Sbjct: 427 TAIAAGDDHTCARTSSGGVMCWGDNWSGQLGDGTTTDRSTPVAVSGLGSGVTAIAAGGSH 486

Query: 226 SDQEISSSTI----EKAQKLVSEGMEKEKYMPIIWEPFLVEGV--EVVDIACGFDHSLVL 279
           +   +SS  +      +   + +G   ++  P+      V G+  EV  IA G  H+  L
Sbjct: 487 TCALMSSGGVWCWGRNSSGQLGDGTTTDRGTPVA-----VSGLPSEVTAIASGGVHTCAL 541

Query: 280 GRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFHPVSISSGLGHSLAICEVRSSNVTGGA 339
             +G ++  G+N  GQLG         PV ++  P  + +     L  C + SS      
Sbjct: 542 TSSGGVMCWGANWSGQLGDGTTTARSTPVAVSGLPSGVMAIAAGDLHTCALTSSG----- 596

Query: 340 RGIVSWGWNRSSQL--GRMGPDNVPLVVEGL 368
            G+  WG N S QL  G     + P+ V GL
Sbjct: 597 -GVWCWGANSSGQLGDGTTTARSTPVAVSGL 626



 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 112/372 (30%), Positives = 160/372 (43%), Gaps = 42/372 (11%)

Query: 18  RIFMRSASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSL 77
               R++SG  V+ +GD   G LG  T+      D   P  V GL S VT+++AG  H+ 
Sbjct: 180 HTCARTSSG-GVMCWGDNWSGQLGDGTTT-----DRSTPVAVSGLGSGVTAIAAGGSHTC 233

Query: 78  AVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDD 137
           A+ ++G VW WG N   QLG G    R+T   P  V GL    V A  A G  + A    
Sbjct: 234 ALMSSGGVWCWGDNWSGQLGDGTTTDRST---PVAVSGLAS-GVTAIAAGGFHTCARTSS 289

Query: 138 GSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWG 197
           G +  WG +  GQLG G   T    P  V  LA   +  ++ G  H  A T  G ++ WG
Sbjct: 290 GGVMCWGANWSGQLGDGT-TTARSTPVAVSGLA-SGVTAIAAGDSHTCALTSSGGVWCWG 347

Query: 198 YSADGRIGNLGKALESSP-----LDSNIDRSSESDQE----ISSSTI----EKAQKLVSE 244
           Y+  G++G+      S+P     L S +   +  D      +SS  +          + +
Sbjct: 348 YNFFGQLGDGTTTDRSTPVAVSGLGSGVTAIAAGDFHTCALMSSGGVRCWGRNKDGQLGD 407

Query: 245 GMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMG 304
           G    +  P+     LV GV    IA G DH+     +G ++  G N  GQLG       
Sbjct: 408 GTTTTRSTPVA-VSGLVSGVTA--IAAGDDHTCARTSSGGVMCWGDNWSGQLGDGTTTDR 464

Query: 305 MFPVDIN---FHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPDN- 360
             PV ++       +I++G  H+   C + SS       G+  WG N S QLG     + 
Sbjct: 465 STPVAVSGLGSGVTAIAAGGSHT---CALMSSG------GVWCWGRNSSGQLGDGTTTDR 515

Query: 361 -VPLVVEGLEGE 371
             P+ V GL  E
Sbjct: 516 GTPVAVSGLPSE 527



 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 104/350 (29%), Positives = 154/350 (44%), Gaps = 34/350 (9%)

Query: 18  RIFMRSASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSL 77
               R++SG  V+ +GD   G LG  T+      D   P  V GL S VT+++AG  H+ 
Sbjct: 435 HTCARTSSG-GVMCWGDNWSGQLGDGTTT-----DRSTPVAVSGLGSGVTAIAAGGSHTC 488

Query: 78  AVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDD 137
           A+ ++G VW WGRN+  QLG G    R T   P  V GL    V A  + GV + A+   
Sbjct: 489 ALMSSGGVWCWGRNSSGQLGDGTTTDRGT---PVAVSGLPS-EVTAIASGGVHTCALTSS 544

Query: 138 GSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWG 197
           G +  WG +  GQLG G   T    P  V  L    ++ ++ G  H  A T  G ++ WG
Sbjct: 545 GGVMCWGANWSGQLGDGT-TTARSTPVAVSGLP-SGVMAIAAGDLHTCALTSSGGVWCWG 602

Query: 198 YSADGRIGNLGKALESSPLD--------SNIDRSSESDQEISSSTIEKAQKLVSEGMEKE 249
            ++ G++G+      S+P+         + I   S     ++SS           G   +
Sbjct: 603 ANSSGQLGDGTTTARSTPVAVSGLPSGVTAIAAGSFHTCALTSSGGVWCWGANWSGQLGD 662

Query: 250 KYMPIIWEPFLVEGVE--VVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFP 307
                   P  V G+   V  IA G  H+     +G +    SN YGQLG         P
Sbjct: 663 GSYTDSSTPVAVSGLPSGVTAIAAGRFHTCARTGSGGVWCWASNRYGQLGDGSYTDSSTP 722

Query: 308 VDIN---FHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLG 354
           V ++       +I++G+ H+ A    R+S+      G++ WG N S QLG
Sbjct: 723 VAVSGLVSGVTAIAAGVVHTCA----RTSS-----GGVMCWGANSSGQLG 763



 Score = 94.4 bits (233), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 100/329 (30%), Positives = 143/329 (43%), Gaps = 30/329 (9%)

Query: 55  EPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVE 114
            P  V GL S VT+++AG  H+ A T++G V  WG N   QLG G    R+T   P  V 
Sbjct: 415 TPVAVSGLVSGVTAIAAGDDHTCARTSSGGVMCWGDNWSGQLGDGTTTDRST---PVAVS 471

Query: 115 GLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKI 174
           GL    V A  A G  + A+   G +W WG++  GQLG G   T+   P  V  L  E +
Sbjct: 472 GLGS-GVTAIAAGGSHTCALMSSGGVWCWGRNSSGQLGDGT-TTDRGTPVAVSGLPSE-V 528

Query: 175 VKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSP-----LDSNIDRSSESDQE 229
             ++ G  H  A T  G +  WG +  G++G+      S+P     L S +   +  D  
Sbjct: 529 TAIASGGVHTCALTSSGGVMCWGANWSGQLGDGTTTARSTPVAVSGLPSGVMAIAAGDLH 588

Query: 230 ---ISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVE--VVDIACGFDHSLVLGRNGV 284
              ++SS         S G   +        P  V G+   V  IA G  H+  L  +G 
Sbjct: 589 TCALTSSGGVWCWGANSSGQLGDGTTTARSTPVAVSGLPSGVTAIAAGSFHTCALTSSGG 648

Query: 285 LLSCGSNVYGQLGREKQDMGMFPVDINFHP---VSISSGLGHSLAICEVRSSNVTGGARG 341
           +   G+N  GQLG         PV ++  P    +I++G  H+ A    R+     G+ G
Sbjct: 649 VWCWGANWSGQLGDGSYTDSSTPVAVSGLPSGVTAIAAGRFHTCA----RT-----GSGG 699

Query: 342 IVSWGWNRSSQL--GRMGPDNVPLVVEGL 368
           +  W  NR  QL  G     + P+ V GL
Sbjct: 700 VWCWASNRYGQLGDGSYTDSSTPVAVSGL 728



 Score = 89.4 bits (220), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 93/339 (27%), Positives = 139/339 (41%), Gaps = 44/339 (12%)

Query: 52  DAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPK 111
           D   P  V GL S VT+++AG+ H+ A+ ++G V  WG N   QLG G    R+T   P 
Sbjct: 106 DRSTPVAVSGLTSGVTAIAAGYAHTCALMSSGGVMCWGDNWSGQLGDGTTTDRST---PV 162

Query: 112 RVEGLDQVNVCAAFASGVVSSAIGDD--------GSLWVWGKSKRGQLGLGKDITEAIVP 163
            V GL         ASGV + A GDD        G +  WG +  GQLG G   T+   P
Sbjct: 163 AVSGL---------ASGVTAIAAGDDHTCARTSSGGVMCWGDNWSGQLGDGT-TTDRSTP 212

Query: 164 SRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRS 223
             V  L G  +  ++ G  H  A    G ++ WG +  G++G+      S+P+   +   
Sbjct: 213 VAVSGL-GSGVTAIAAGGSHTCALMSSGGVWCWGDNWSGQLGDGTTTDRSTPV--AVSGL 269

Query: 224 SESDQEISSSTIEKAQKLVSEGME----------KEKYMPIIWEPFLVEGVE--VVDIAC 271
           +     I++       +  S G+            +        P  V G+   V  IA 
Sbjct: 270 ASGVTAIAAGGFHTCARTSSGGVMCWGANWSGQLGDGTTTARSTPVAVSGLASGVTAIAA 329

Query: 272 GFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFHPVSISSGLGHSLAICEVR 331
           G  H+  L  +G +   G N +GQLG         PV ++     +++        C + 
Sbjct: 330 GDSHTCALTSSGGVWCWGYNFFGQLGDGTTTDRSTPVAVSGLGSGVTAIAAGDFHTCALM 389

Query: 332 SSNVTGGARGIVSWGWNRSSQL--GRMGPDNVPLVVEGL 368
           SS       G+  WG N+  QL  G     + P+ V GL
Sbjct: 390 SSG------GVRCWGRNKDGQLGDGTTTTRSTPVAVSGL 422



 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 83/285 (29%), Positives = 124/285 (43%), Gaps = 27/285 (9%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAW 88
           V  +G  S G LG  T+      D   P  V GLPS+VT++++G  H+ A+T++G V  W
Sbjct: 496 VWCWGRNSSGQLGDGTTT-----DRGTPVAVSGLPSEVTAIASGGVHTCALTSSGGVMCW 550

Query: 89  GRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKR 148
           G N   QLG G   +R+T   P  V GL    V A  A  + + A+   G +W WG +  
Sbjct: 551 GANWSGQLGDGTTTARST---PVAVSGLPS-GVMAIAAGDLHTCALTSSGGVWCWGANSS 606

Query: 149 GQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLG 208
           GQLG G   T    P  V  L    +  ++ G  H  A T  G ++ WG +  G++G+  
Sbjct: 607 GQLGDGT-TTARSTPVAVSGLP-SGVTAIAAGSFHTCALTSSGGVWCWGANWSGQLGDGS 664

Query: 209 KALESSP-----LDSNIDRSSESDQEISSST--------IEKAQKLVSEGMEKEKYMPII 255
               S+P     L S +   +       + T               + +G   +   P+ 
Sbjct: 665 YTDSSTPVAVSGLPSGVTAIAAGRFHTCARTGSGGVWCWASNRYGQLGDGSYTDSSTPVA 724

Query: 256 WEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREK 300
               LV GV    IA G  H+     +G ++  G+N  GQLG  +
Sbjct: 725 -VSGLVSGVTA--IAAGVVHTCARTSSGGVMCWGANSSGQLGDGR 766



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 91/321 (28%), Positives = 140/321 (43%), Gaps = 36/321 (11%)

Query: 66  VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAF 125
           VT+++AG  H+ A+T++G V  WGRN   QLG G    R+T   P  V GL    V A  
Sbjct: 69  VTAIAAGGAHTCALTSSGGVMCWGRNGFGQLGDGTTTDRST---PVAVSGLTS-GVTAIA 124

Query: 126 ASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHAL 185
           A    + A+   G +  WG +  GQLG G   T+   P  V  LA   +  ++ G  H  
Sbjct: 125 AGYAHTCALMSSGGVMCWGDNWSGQLGDGT-TTDRSTPVAVSGLA-SGVTAIAAGDDHTC 182

Query: 186 AQTEDGKLFGWGYSADGRIGNLGKALESSP-----LDSNIDR----SSESDQEISSSTI- 235
           A+T  G +  WG +  G++G+      S+P     L S +       S +   +SS  + 
Sbjct: 183 ARTSSGGVMCWGDNWSGQLGDGTTTDRSTPVAVSGLGSGVTAIAAGGSHTCALMSSGGVW 242

Query: 236 ---EKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNV 292
              +     + +G   ++  P+     L  GV    IA G  H+     +G ++  G+N 
Sbjct: 243 CWGDNWSGQLGDGTTTDRSTPVA-VSGLASGVTA--IAAGGFHTCARTSSGGVMCWGANW 299

Query: 293 YGQLGREKQDMGMFPVDINFHP---VSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNR 349
            GQLG         PV ++       +I++G  H+   C + SS       G+  WG+N 
Sbjct: 300 SGQLGDGTTTARSTPVAVSGLASGVTAIAAGDSHT---CALTSSG------GVWCWGYNF 350

Query: 350 SSQL--GRMGPDNVPLVVEGL 368
             QL  G     + P+ V GL
Sbjct: 351 FGQLGDGTTTDRSTPVAVSGL 371



 Score = 44.3 bits (103), Expect = 0.098,   Method: Compositional matrix adjust.
 Identities = 24/53 (45%), Positives = 32/53 (60%)

Query: 52  DAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESR 104
           D+  P  V GL S VT+++AG  H+ A T++G V  WG N+  QLG G L  R
Sbjct: 718 DSSTPVAVSGLVSGVTAIAAGVVHTCARTSSGGVMCWGANSSGQLGDGRLLYR 770


>gi|55832766|gb|AAV66896.1| truncated HERC6 [Homo sapiens]
          Length = 364

 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 86/270 (31%), Positives = 128/270 (47%), Gaps = 45/270 (16%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTR-VPGLPSDVTSVSAGHYHSLAVTNNGAVWA 87
           V+S GD S+G LG   +  G   +  EP + +  L  D+  VS G  HSLAV + G V+A
Sbjct: 44  VLSCGDNSRGQLGRRGAQRG---ELPEPIQALETLIVDL--VSCGKEHSLAVCHKGRVFA 98

Query: 88  WGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSK 147
           WG  +E QLG G  E +     PK++  L+ + +         S A+  D  ++ WGK+ 
Sbjct: 99  WGAGSEGQLGIG--EFKEISFTPKKIMTLNDIKIIQVSCGHYHSLALSKDSQVFSWGKNS 156

Query: 148 RGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNL 207
            GQLGLGK+      P RV +L G  + +V+ G  H+ A +  G  FGWG ++ G++   
Sbjct: 157 HGQLGLGKEFPSQASPQRVRSLEGIPLAQVAAGGAHSFALSLCGTSFGWGSNSAGQLALS 216

Query: 208 GKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVV 267
           G+ +   P+ SN                    K +S G  K               + VV
Sbjct: 217 GRNV---PVQSN--------------------KPLSVGALKN--------------LGVV 239

Query: 268 DIACGFDHSLVLGRNGVLLSCGSNVYGQLG 297
            I+CG  H+ VL ++G + + G N  GQLG
Sbjct: 240 YISCGDAHTAVLTQDGKVFTFGDNRSGQLG 269



 Score = 83.6 bits (205), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 87/318 (27%), Positives = 139/318 (43%), Gaps = 51/318 (16%)

Query: 58  RVPGLP-SDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGL 116
           R  G P +++   ++G  HSL +  N  V + G N+  QLGR   + R    +P  ++ L
Sbjct: 16  RTAGSPGAELLQAASGERHSLLLLTNHRVLSCGDNSRGQLGRRGAQ-RGELPEP--IQAL 72

Query: 117 DQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVK 176
           + + V         S A+   G ++ WG    GQLG+G+    +  P ++  L   KI++
Sbjct: 73  ETLIVDLVSCGKEHSLAVCHKGRVFAWGAGSEGQLGIGEFKEISFTPKKIMTLNDIKIIQ 132

Query: 177 VSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIE 236
           VS G  H+LA ++D ++F WG ++ G++G LGK             S  S Q + S    
Sbjct: 133 VSCGHYHSLALSKDSQVFSWGKNSHGQLG-LGKEFP----------SQASPQRVRS---- 177

Query: 237 KAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQL 296
                                   +EG+ +  +A G  HS  L   G     GSN  GQL
Sbjct: 178 ------------------------LEGIPLAQVAAGGAHSFALSLCGTSFGWGSNSAGQL 213

Query: 297 GREKQDMGMFPVDINFHPVSISS--GLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLG 354
               +++   PV  N  P+S+ +   LG     C    + V      + ++G NRS QLG
Sbjct: 214 ALSGRNV---PVQSN-KPLSVGALKNLGVVYISCGDAHTAVLTQDGKVFTFGDNRSGQLG 269

Query: 355 RM-GPDNV-PLVVEGLEG 370
               P+   P +VE ++G
Sbjct: 270 YSPTPEKRGPQLVERIDG 287



 Score = 49.3 bits (116), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 53/201 (26%), Positives = 80/201 (39%), Gaps = 16/201 (7%)

Query: 27  TAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRV---PGLPSDVTSVSAGHYHSLAVTNNG 83
           + V S+G  S G LGL             P RV    G+P  +  V+AG  HS A++  G
Sbjct: 147 SQVFSWGKNSHGQLGLGKEFP----SQASPQRVRSLEGIP--LAQVAAGGAHSFALSLCG 200

Query: 84  AVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVW 143
             + WG N+  QL           N P  V  L  + V         ++ +  DG ++ +
Sbjct: 201 TSFGWGSNSAGQLALSGRNVPVQSNKPLSVGALKNLGVVYISCGDAHTAVLTQDGKVFTF 260

Query: 144 GKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTE-DGKLFGWGYSADG 202
           G ++ GQLG      E   P  VE + G  + ++  G  H LA     G++  +G+    
Sbjct: 261 GDNRSGQLGY-SPTPEKRGPQLVERIDG-LVSQIDCGSYHTLAYVHTTGQVVSFGHGPS- 317

Query: 203 RIGNLGKALESSPLDSNIDRS 223
              +  K      L  N D S
Sbjct: 318 ---DTSKPTHPEALTENFDIS 335


>gi|339010099|ref|ZP_08642670.1| copper amine oxidase domain protein [Brevibacillus laterosporus LMG
           15441]
 gi|338773369|gb|EGP32901.1| copper amine oxidase domain protein [Brevibacillus laterosporus LMG
           15441]
          Length = 392

 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 102/363 (28%), Positives = 168/363 (46%), Gaps = 56/363 (15%)

Query: 17  SRIFMRSASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHS 76
           +R FM    G+ +   G  + G LG  +    V G    P  V  L SDV  V  G  H+
Sbjct: 41  NRTFMVKKDGSVIYGTGSDANGVLGSSS----VKGKTTSPVPVDDL-SDVLMVDTGTSHT 95

Query: 77  LAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGD 136
           +A+  +G VW WG +   +LG    ++++T   P  V+ L  V    A  +   + A+ +
Sbjct: 96  VALQKDGTVWTWGWSAYGELGNE--KAKSTEKTPHHVKWLSDVKQVRAGEN--FTLALKE 151

Query: 137 DGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGW 196
           DG++W +GK++ GQLG G   T  + P +V  L    IV +  G   +LA +EDG ++ W
Sbjct: 152 DGTVWAFGKNRSGQLGDGTTETR-VKPVQVSGLT--DIVAIDAGEEFSLALSEDGTVWAW 208

Query: 197 GYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKA----------------QK 240
           G ++ G++GN  +     P+     + SE    I+ ST EK                 Q 
Sbjct: 209 GNNSVGQLGNGTREKALQPV-----QVSELTDVIAISTGEKQGYAVTSNGDVYGWGYNQG 263

Query: 241 LVSEGMEKEKYMPIIWEPFLVEGV-EVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGR- 298
            + +G  K +  P+     L++G+ +V+ +  G  H+L L  +G + + G+N +GQLG  
Sbjct: 264 KLGDGTNKSRNSPV-----LIDGIYDVIAVDSGKQHTLALKEDGTVWAWGTNTHGQLGYG 318

Query: 299 EKQDMGMFPVDINFHP-------VSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSS 351
              +  M P  +           V+I +G  HS AI +  +         + SWG+N + 
Sbjct: 319 TPVNYSMTPNQVFLESTEPLNQIVAIDAGGFHSHAIKKDGT---------VWSWGFNSNG 369

Query: 352 QLG 354
           +LG
Sbjct: 370 ELG 372



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 51/150 (34%), Positives = 76/150 (50%), Gaps = 13/150 (8%)

Query: 26  GTAVVSFGD-----GSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVT 80
           G AV S GD      +QG LG      G       P  + G+  DV +V +G  H+LA+ 
Sbjct: 246 GYAVTSNGDVYGWGYNQGKLG-----DGTNKSRNSPVLIDGI-YDVIAVDSGKQHTLALK 299

Query: 81  NNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVN-VCAAFASGVVSSAIGDDGS 139
            +G VWAWG N   QLG G   + +   +   +E  + +N + A  A G  S AI  DG+
Sbjct: 300 EDGTVWAWGTNTHGQLGYGTPVNYSMTPNQVFLESTEPLNQIVAIDAGGFHSHAIKKDGT 359

Query: 140 LWVWGKSKRGQLGLGKDITEAIVPSRVEAL 169
           +W WG +  G+LGLG    + + P+++E +
Sbjct: 360 VWSWGFNSNGELGLGHS-KKQMYPAKIETI 388


>gi|156406658|ref|XP_001641162.1| predicted protein [Nematostella vectensis]
 gi|156228299|gb|EDO49099.1| predicted protein [Nematostella vectensis]
          Length = 596

 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 102/363 (28%), Positives = 153/363 (42%), Gaps = 77/363 (21%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYE--PTRVPGLP-SDVTSVSAGHYHSLAVTNNGAV 85
           + ++G+G+ G LG        G D  E  P  V  L   D+  V+ G  H+LA++ +G V
Sbjct: 209 IYTWGEGTNGMLGH-------GEDTQEAHPHVVEALLGKDIRKVACGATHTLALSKDGEV 261

Query: 86  WAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNV----CAAFASGVVSSAIGDDGSLW 141
           ++WG     +LG+G L  R T   P R+ GL+ +N+    C  F S  V  A    G+L+
Sbjct: 262 FSWGSGYGGRLGQGHLRDRFT---PIRICGLESLNLTQVACNEFHSAAV-CACSKQGALF 317

Query: 142 VWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSAD 201
            +G++  GQLG+ +D         V +L+  KI +V+ G  H+ A  E G L+ WG +  
Sbjct: 318 SFGENDYGQLGIPEDKLLTSYIQCVSSLSEHKISRVACGSFHSAALAEHGSLWLWGCNES 377

Query: 202 GRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLV 261
           G++GN      S P                 S +E    L  +                 
Sbjct: 378 GQLGNGNYTSTSLP-----------------SLLEAGNDLRHDA---------------- 404

Query: 262 EGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDIN---------- 311
               V+++ACG  HS  + + G +  CG N YGQLG    D     V  N          
Sbjct: 405 ----VMEVACGDQHSAFITKKGRMFCCGDNTYGQLGAHLNDNQDDHVTYNVAVRVRVPTD 460

Query: 312 FHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPDNVPLVVE---GL 368
           F  V ++ G  H+          VT G   I +WG  +  +LG     N  L  E   G+
Sbjct: 461 FRCVHVACGDSHTAV--------VTDGGE-IFTWGRGKGGRLGHGDNLNRHLPTEIEIGM 511

Query: 369 EGE 371
           EG+
Sbjct: 512 EGK 514



 Score = 69.3 bits (168), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 64/227 (28%), Positives = 95/227 (41%), Gaps = 58/227 (25%)

Query: 136 DDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFG 195
           D   ++ WG+   G LG G+D  EA  P  VEAL G+ I KV+ G  H LA ++DG++F 
Sbjct: 205 DACDIYTWGEGTNGMLGHGEDTQEAH-PHVVEALLGKDIRKVACGATHTLALSKDGEVFS 263

Query: 196 WGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPII 255
           WG    GR+G                                      +G  ++++ PI 
Sbjct: 264 WGSGYGGRLG--------------------------------------QGHLRDRFTPI- 284

Query: 256 WEPFLVEGVEVVDIACGFDHS---LVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVD--- 309
                +E + +  +AC   HS       + G L S G N YGQLG  +  +    +    
Sbjct: 285 -RICGLESLNLTQVACNEFHSAAVCACSKQGALFSFGENDYGQLGIPEDKLLTSYIQCVS 343

Query: 310 -INFHPVS-ISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLG 354
            ++ H +S ++ G  HS A+ E  S         +  WG N S QLG
Sbjct: 344 SLSEHKISRVACGSFHSAALAEHGS---------LWLWGCNESGQLG 381



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 57/201 (28%), Positives = 87/201 (43%), Gaps = 25/201 (12%)

Query: 28  AVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPS----DVTSVSAGHYHSLAVTNNG 83
           A+ SFG+   G LG+P        D    + +  + S     ++ V+ G +HS A+  +G
Sbjct: 315 ALFSFGENDYGQLGIPE-------DKLLTSYIQCVSSLSEHKISRVACGSFHSAALAEHG 367

Query: 84  AVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQV--NVCAAFASGVVSSA-IGDDGSL 140
           ++W WG N   QLG G   S +    P  +E  + +  +     A G   SA I   G +
Sbjct: 368 SLWLWGCNESGQLGNGNYTSTSL---PSLLEAGNDLRHDAVMEVACGDQHSAFITKKGRM 424

Query: 141 WVWGKSKRGQLGLG-----KDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFG 195
           +  G +  GQLG        D     V  RV      + V V+ G  H    T+ G++F 
Sbjct: 425 FCCGDNTYGQLGAHLNDNQDDHVTYNVAVRVRVPTDFRCVHVACGDSHTAVVTDGGEIFT 484

Query: 196 WGYSADGRIG---NLGKALES 213
           WG    GR+G   NL + L +
Sbjct: 485 WGRGKGGRLGHGDNLNRHLPT 505



 Score = 45.8 bits (107), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 44/158 (27%), Positives = 67/158 (42%), Gaps = 16/158 (10%)

Query: 32  FGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRN 91
            G+G+  +  LP SL   G D             V  V+ G  HS  +T  G ++  G N
Sbjct: 380 LGNGNYTSTSLP-SLLEAGNDLRHDA--------VMEVACGDQHSAFITKKGRMFCCGDN 430

Query: 92  NEVQLG---RGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAI-GDDGSLWVWGKSK 147
              QLG       +   T+N   RV        C   A G   +A+  D G ++ WG+ K
Sbjct: 431 TYGQLGAHLNDNQDDHVTYNVAVRVRVPTDFR-CVHVACGDSHTAVVTDGGEIFTWGRGK 489

Query: 148 RGQLGLGKDITEAIVPSRVE-ALAGEKIVKVSFGWGHA 184
            G+LG G ++   + P+ +E  + G+ +  VS G  H 
Sbjct: 490 GGRLGHGDNLNRHL-PTEIEIGMEGKHVRGVSCGRAHT 526


>gi|149701724|ref|XP_001494887.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC6 [Equus
           caballus]
          Length = 988

 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 74/241 (30%), Positives = 114/241 (47%), Gaps = 41/241 (17%)

Query: 66  VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAF 125
           V+ VS G  HSLAV + G V+AWG  +E QLG G  E +     PK+++ L  + +    
Sbjct: 48  VSLVSCGQEHSLAVCHRGRVFAWGAGSEGQLGTG--EVKGINFTPKKIKTLTGIKIIQVS 105

Query: 126 ASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHAL 185
                S A+ + G ++ WGK+ +GQLGLGK+      P RV +L G  + +V+ G  H+ 
Sbjct: 106 CGDYHSLALSEGGQVFSWGKNSQGQLGLGKEFPSQDSPQRVRSLEGIPLAQVAAGGAHSF 165

Query: 186 AQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEG 245
           A +  G  FGWG ++ G++   G  +   P+ S   RS  +                   
Sbjct: 166 ALSVSGTSFGWGNNSAGQLALSGNNV---PVQSYKPRSIGA------------------- 203

Query: 246 MEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREK--QDM 303
                          +  + V+ I+CG++H+ VL +NG + + G N  GQLG     QD 
Sbjct: 204 ---------------LRNLGVIYISCGYEHTAVLTQNGKVFTFGDNSCGQLGHSPSAQDR 248

Query: 304 G 304
           G
Sbjct: 249 G 249



 Score = 69.7 bits (169), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 70/266 (26%), Positives = 112/266 (42%), Gaps = 47/266 (17%)

Query: 109 DPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEA 168
           +P+ +  L+ + V         S A+   G ++ WG    GQLG G+       P +++ 
Sbjct: 36  NPEPIRTLETLRVSLVSCGQEHSLAVCHRGRVFAWGAGSEGQLGTGEVKGINFTPKKIKT 95

Query: 169 LAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQ 228
           L G KI++VS G  H+LA +E G++F WG ++ G++G LGK             S +S Q
Sbjct: 96  LTGIKIIQVSCGDYHSLALSEGGQVFSWGKNSQGQLG-LGKEFP----------SQDSPQ 144

Query: 229 EISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSC 288
            + S                            +EG+ +  +A G  HS  L  +G     
Sbjct: 145 RVRS----------------------------LEGIPLAQVAAGGAHSFALSVSGTSFGW 176

Query: 289 GSNVYGQLGREKQDMGMFPVDINFHPVSISS--GLGHSLAICEVRSSNVTGGARGIVSWG 346
           G+N  GQL     ++   PV  ++ P SI +   LG     C    + V      + ++G
Sbjct: 177 GNNSAGQLALSGNNV---PVQ-SYKPRSIGALRNLGVIYISCGYEHTAVLTQNGKVFTFG 232

Query: 347 WNRSSQLGR--MGPDNVPLVVEGLEG 370
            N   QLG      D  P +VE ++G
Sbjct: 233 DNSCGQLGHSPSAQDRGPQLVERIDG 258



 Score = 42.0 bits (97), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 44/166 (26%), Positives = 70/166 (42%), Gaps = 11/166 (6%)

Query: 24  ASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRV---PGLPSDVTSVSAGHYHSLAVT 80
           + G  V S+G  SQG LGL             P RV    G+P  +  V+AG  HS A++
Sbjct: 115 SEGGQVFSWGKNSQGQLGLGKEFPSQDS----PQRVRSLEGIP--LAQVAAGGAHSFALS 168

Query: 81  NNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSL 140
            +G  + WG N+  QL             P+ +  L  + V         ++ +  +G +
Sbjct: 169 VSGTSFGWGNNSAGQLALSGNNVPVQSYKPRSIGALRNLGVIYISCGYEHTAVLTQNGKV 228

Query: 141 WVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALA 186
           + +G +  GQLG      +   P  VE + G  + ++  G  H LA
Sbjct: 229 FTFGDNSCGQLGHSPSAQDR-GPQLVERIDG-LVSQIDCGSYHTLA 272



 Score = 39.3 bits (90), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 34/99 (34%), Positives = 48/99 (48%), Gaps = 7/99 (7%)

Query: 20  FMRSASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPS-DVTSVSAGHYHSLA 78
           F  S SGT   SFG G+  A  L  S   V   +Y+P  +  L +  V  +S G+ H+  
Sbjct: 165 FALSVSGT---SFGWGNNSAGQLALSGNNVPVQSYKPRSIGALRNLGVIYISCGYEHTAV 221

Query: 79  VTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLD 117
           +T NG V+ +G N+  QLG       A    P+ VE +D
Sbjct: 222 LTQNGKVFTFGDNSCGQLGHSP---SAQDRGPQLVERID 257


>gi|148263849|ref|YP_001230555.1| regulator of chromosome condensation, RCC1 [Geobacter
           uraniireducens Rf4]
 gi|146397349|gb|ABQ25982.1| regulator of chromosome condensation, RCC1 [Geobacter
           uraniireducens Rf4]
          Length = 417

 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 91/275 (33%), Positives = 134/275 (48%), Gaps = 43/275 (15%)

Query: 29  VVSFGDGSQGALG---LPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAV 85
           V S+G+ + G LG     TS    G    +P    GL S +T ++AG  HSLA+ ++GAV
Sbjct: 160 VWSWGENTNGQLGRNVTDTSPLIAGQVMTDPPNGIGLTS-ITRIAAGGSHSLALDSSGAV 218

Query: 86  WAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGK 145
           WAWG N   QLG G+L  +     P ++ G+  V V A  A G  S A+ ++G++W WG 
Sbjct: 219 WAWGYNGYGQLGDGSLVDKKL---PVKLTGI-TVPVVAIAAGGAFSVAVDNNGAVWAWGY 274

Query: 146 SKRGQLGLGKDITEAIVPSRVEALAGE---KIVKVSFGWGHALAQTEDGKLFGWGYSADG 202
           +  GQLG  K  T++ VP +V    G     I  ++ G  H LA   +G ++ WGY+  G
Sbjct: 275 NGFGQLG-NKSTTDSNVPVQVVLEDGTPLPNIKAIAAGLDHVLALDSNGAIWAWGYNGLG 333

Query: 203 RIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVE 262
           ++GN                    +  I+SST  +     +          +I  PF V+
Sbjct: 334 QLGN--------------------NTTINSSTPVQVPAFTAA---------LIDSPFTVD 364

Query: 263 GVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLG 297
           GV  + +A G  H+L    +G L + G N YGQLG
Sbjct: 365 GVNPI-LAAG-HHTLARKADGTLWAWGDNAYGQLG 397



 Score = 77.0 bits (188), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 88/323 (27%), Positives = 132/323 (40%), Gaps = 74/323 (22%)

Query: 52  DAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPK 111
           ++  P +V GL      V+ G  HSLA  NN  V AWG N   QLG G        N P 
Sbjct: 70  NSASPVKVSGL-VGAKGVAIGADHSLAFFNNSTVRAWGYNGFGQLGNGTTTYS---NIPV 125

Query: 112 RVEGL-------DQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPS 164
            V+ L       +   V A  A G  S A+  +G++W WG++  GQLG     T  ++  
Sbjct: 126 PVKTLIGTASSINLTGVTAVAAGGFHSLAL-KNGTVWSWGENTNGQLGRNVTDTSPLIAG 184

Query: 165 RV-----EALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSN 219
           +V       +    I +++ G  H+LA    G ++ WGY+  G++G+             
Sbjct: 185 QVMTDPPNGIGLTSITRIAAGGSHSLALDSSGAVWAWGYNGYGQLGD------------- 231

Query: 220 IDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVL 279
                        S ++K   +   G+                 V VV IA G   S+ +
Sbjct: 232 ------------GSLVDKKLPVKLTGIT----------------VPVVAIAAGGAFSVAV 263

Query: 280 GRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFH---PV----SISSGLGHSLAICEVRS 332
             NG + + G N +GQLG +       PV +      P+    +I++GL H LA+     
Sbjct: 264 DNNGAVWAWGYNGFGQLGNKSTTDSNVPVQVVLEDGTPLPNIKAIAAGLDHVLAL----D 319

Query: 333 SNVTGGARGIVSWGWNRSSQLGR 355
           SN       I +WG+N   QLG 
Sbjct: 320 SN-----GAIWAWGYNGLGQLGN 337



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 89/323 (27%), Positives = 138/323 (42%), Gaps = 66/323 (20%)

Query: 55  EPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVE 114
           + T  P +P+  T   A   HSLA  N+  + AWG N   QLG  +L + A+   P +V 
Sbjct: 26  DSTSTPTVPATATIFYA---HSLAFRNSTTM-AWGYNGFGQLGDVSLNNSAS---PVKVS 78

Query: 115 GLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEK- 173
           GL      A  A    S A  ++ ++  WG +  GQLG G   T + +P  V+ L G   
Sbjct: 79  GLVGAKGVAIGADH--SLAFFNNSTVRAWGYNGFGQLGNGT-TTYSNIPVPVKTLIGTAS 135

Query: 174 ------IVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESD 227
                 +  V+ G  H+LA  ++G ++ WG + +G++G      ++SPL           
Sbjct: 136 SINLTGVTAVAAGGFHSLA-LKNGTVWSWGENTNGQLGR--NVTDTSPL----------- 181

Query: 228 QEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLS 287
                     A +++++             P  +    +  IA G  HSL L  +G + +
Sbjct: 182 ---------IAGQVMTD------------PPNGIGLTSITRIAAGGSHSLALDSSGAVWA 220

Query: 288 CGSNVYGQLGREKQDMGMFPVD---INFHPVSISSGLGHSLAICEVRSSNVTGGARGIVS 344
            G N YGQLG         PV    I    V+I++G   S+A+          GA  + +
Sbjct: 221 WGYNGYGQLGDGSLVDKKLPVKLTGITVPVVAIAAGGAFSVAVDN-------NGA--VWA 271

Query: 345 WGWNRSSQLGRMGP--DNVPLVV 365
           WG+N   QLG       NVP+ V
Sbjct: 272 WGYNGFGQLGNKSTTDSNVPVQV 294


>gi|395521023|ref|XP_003764621.1| PREDICTED: RCC1 and BTB domain-containing protein 2 [Sarcophilus
           harrisii]
          Length = 552

 Score =  102 bits (253), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 62/188 (32%), Positives = 99/188 (52%), Gaps = 9/188 (4%)

Query: 66  VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAF 125
           V  V+ G +HSL +T++G V+AWG NN  Q+G G   S A    P++V G  Q  +    
Sbjct: 155 VIEVACGSHHSLVLTSDGEVFAWGYNNSGQVGSG---STANQPIPRKVTGCLQNKIATTI 211

Query: 126 ASG-VVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHA 184
           A G + S A+ + G ++VWG +  GQLGLG    +   P R+ AL G ++ K+  G+ H 
Sbjct: 212 ACGQMCSMAVVESGEVYVWGYNGNGQLGLGSSGNQP-TPCRIAALQGIRVHKIVCGYAHT 270

Query: 185 LAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSE 244
           L  T++G L+ WG ++ G++G   K+ +S P   ++    E D+ I  +    A    ++
Sbjct: 271 LVLTDEGHLYAWGANSYGQLGTGNKSNQSYPTPVSV----EKDRVIEIAACHSAHTSAAK 326

Query: 245 GMEKEKYM 252
                 YM
Sbjct: 327 TQSGHIYM 334



 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 80/289 (27%), Positives = 126/289 (43%), Gaps = 25/289 (8%)

Query: 77  LAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNV-CAAFASGVVSSAIG 135
           L  T N  V+  G N    LG G +       +P+RV+ L    + C ++ SG       
Sbjct: 60  LYSTENDEVFVLGTNCSGCLGTGDILHSI---EPRRVDHLCGKKIACLSYGSGPHVVIAT 116

Query: 136 DDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEA-LAGEKIVKVSFGWGHALAQTEDGKLF 194
           D+G ++ WG +   QLG G      +VP+ +   L   K+++V+ G  H+L  T DG++F
Sbjct: 117 DEGEVYTWGHNAYNQLGNGT-TNHGLVPTHISTNLGNRKVIEVACGSHHSLVLTSDGEVF 175

Query: 195 GWGYSADGRIGNLGKALESSP------LDSNIDRSSESDQEISSSTIEKAQKLV------ 242
            WGY+  G++G+   A +  P      L + I  +    Q  S + +E  +  V      
Sbjct: 176 AWGYNNSGQVGSGSTANQPIPRKVTGCLQNKIATTIACGQMCSMAVVESGEVYVWGYNGN 235

Query: 243 -SEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQ 301
              G+      P       ++G+ V  I CG+ H+LVL   G L + G+N YGQLG   +
Sbjct: 236 GQLGLGSSGNQPTPCRIAALQGIRVHKIVCGYAHTLVLTDEGHLYAWGANSYGQLGTGNK 295

Query: 302 DMGMFPVDINFHPVSISSGLGHSLAICEVRSSNVTGGARG-IVSWGWNR 349
               +P      PVS+       +A C    ++      G I  WG  R
Sbjct: 296 SNQSYPT-----PVSVEKDRVIEIAACHSAHTSAAKTQSGHIYMWGQCR 339



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 67/271 (24%), Positives = 115/271 (42%), Gaps = 63/271 (23%)

Query: 110 PKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEAL 169
           P  ++ + Q  V  +  + V+ S   D+  ++V G +  G LG G DI  +I P RV+ L
Sbjct: 40  PDELKLIRQACVFGSAGNEVLYSTENDE--VFVLGTNCSGCLGTG-DILHSIEPRRVDHL 96

Query: 170 AGEKIVKVSFGWG-HALAQTEDGKLFGWGYSADGRIGN--LGKALESSPLDSNIDRSSES 226
            G+KI  +S+G G H +  T++G+++ WG++A  ++GN      L  + + +N+      
Sbjct: 97  CGKKIACLSYGSGPHVVIATDEGEVYTWGHNAYNQLGNGTTNHGLVPTHISTNLGNR--- 153

Query: 227 DQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLL 286
                                                 +V+++ACG  HSLVL  +G + 
Sbjct: 154 --------------------------------------KVIEVACGSHHSLVLTSDGEVF 175

Query: 287 SCGSNVYGQLGREKQDMGMFPVDI-----NFHPVSISSGLGHSLAICEVRSSNVTGGARG 341
           + G N  GQ+G         P  +     N    +I+ G   S+A+ E         +  
Sbjct: 176 AWGYNNSGQVGSGSTANQPIPRKVTGCLQNKIATTIACGQMCSMAVVE---------SGE 226

Query: 342 IVSWGWNRSSQ--LGRMGPDNVPLVVEGLEG 370
           +  WG+N + Q  LG  G    P  +  L+G
Sbjct: 227 VYVWGYNGNGQLGLGSSGNQPTPCRIAALQG 257


>gi|74219054|dbj|BAE26671.1| unnamed protein product [Mus musculus]
          Length = 464

 Score =  102 bits (253), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 94/322 (29%), Positives = 144/322 (44%), Gaps = 49/322 (15%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAW 88
           V+S G  + G LG+P            P  +  L   V  V+AG  H+LA T  G+V+ W
Sbjct: 122 VLSCGSNAFGQLGVPHGPR----KCVVPQAIECLREKVVCVAAGLRHALATTATGSVFQW 177

Query: 89  GR---NNEVQLGRGA-LESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWG 144
           G    ++  +L  G  L    T  +P RV GL+      A A    S+++ D G L+VWG
Sbjct: 178 GTGLASSGRRLCPGQNLPLFLTAKEPSRVTGLENSTAVCAVAGSDHSASLTDTGELYVWG 237

Query: 145 KSKRGQLGLGKDITEAI---VPSRVEA--LAGEKIVKVSFGWGHALAQTEDGKLFGWGYS 199
           ++K GQL      + A+   +P R+EA     EK+  V  GW H +A+TE GK+F WG +
Sbjct: 238 RNKHGQLA-----SRAVFLPLPQRIEAHYFQDEKVTAVWSGWTHLVAKTETGKVFTWGRA 292

Query: 200 ADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPF 259
                G LG+ LE                  +   +E+   L  +G +     P+     
Sbjct: 293 ---DYGQLGRRLEPPE---------------AQKPVEQDSSLAFQGPQNSVPSPL----H 330

Query: 260 LVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFHPVS--- 316
            + G    +I+CG +H+L + R+    S G N +G  G   +     P  +   P S   
Sbjct: 331 CLTG--ATEISCGSEHNLAVIRDKC-CSWGWNEHGMCGDGTESNVWTPTPVQALPPSPSR 387

Query: 317 ---ISSGLGHSLAICEVRSSNV 335
              +  G GHSLA+C++ +  V
Sbjct: 388 LLLVGCGAGHSLAVCQLPAHPV 409



 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 97/391 (24%), Positives = 156/391 (39%), Gaps = 67/391 (17%)

Query: 24  ASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSD--VTSVSAGHYHSLAVTN 81
           ++   + ++G  S G LGL     G   D + P ++        + SV+ G  HS  VT+
Sbjct: 12  SAAAVLFAWGANSYGQLGL-----GHKEDVFLPQQLSDFCQAGCIKSVTGGGGHSAVVTD 66

Query: 82  NGAVWAWGRNNEVQLGRGALES--RATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGS 139
            G ++  G N + QLG G  E   R T   P R   + QV     F     +  + + G 
Sbjct: 67  GGDLFVCGLNKDGQLGLGHTEEVLRFTICKPLRGCPIRQVACGWDF-----TIMLTEKGQ 121

Query: 140 LWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGW--G 197
           +   G +  GQLG+     + +VP  +E L  EK+V V+ G  HALA T  G +F W  G
Sbjct: 122 VLSCGSNAFGQLGVPHGPRKCVVPQAIECLR-EKVVCVAAGLRHALATTATGSVFQWGTG 180

Query: 198 YSADGRIGNLGKAL----------ESSPLDSNIDRSSESDQEISSSTIEKAQKLV----- 242
            ++ GR    G+ L            + L+++    + +  + S+S  +  +  V     
Sbjct: 181 LASSGRRLCPGQNLPLFLTAKEPSRVTGLENSTAVCAVAGSDHSASLTDTGELYVWGRNK 240

Query: 243 -SEGMEKEKYMPIIW--EPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGRE 299
             +   +  ++P+    E    +  +V  +  G+ H +     G + + G   YGQLGR 
Sbjct: 241 HGQLASRAVFLPLPQRIEAHYFQDEKVTAVWSGWTHLVAKTETGKVFTWGRADYGQLGRR 300

Query: 300 ----------KQDMGMF----------PVDINFHPVSISSGLGHSLAICEVRSSNVTGGA 339
                     +QD  +           P+        IS G  H+LA+  +R        
Sbjct: 301 LEPPEAQKPVEQDSSLAFQGPQNSVPSPLHCLTGATEISCGSEHNLAV--IRDK------ 352

Query: 340 RGIVSWGWNRSSQLGRMGPDNV--PLVVEGL 368
               SWGWN     G     NV  P  V+ L
Sbjct: 353 --CCSWGWNEHGMCGDGTESNVWTPTPVQAL 381



 Score = 65.9 bits (159), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 70/252 (27%), Positives = 107/252 (42%), Gaps = 60/252 (23%)

Query: 124 AFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVK-VSFGWG 182
           + AS  VS+A      L+ WG +  GQLGLG    +  +P ++        +K V+ G G
Sbjct: 5   SCASETVSAA----AVLFAWGANSYGQLGLGHK-EDVFLPQQLSDFCQAGCIKSVTGGGG 59

Query: 183 HALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLV 242
           H+   T+ G LF  G + DG++G LG                   +E+   TI K     
Sbjct: 60  HSAVVTDGGDLFVCGLNKDGQLG-LGHT-----------------EEVLRFTICKP---- 97

Query: 243 SEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLG-REKQ 301
                             + G  +  +ACG+D +++L   G +LSCGSN +GQLG     
Sbjct: 98  ------------------LRGCPIRQVACGWDFTIMLTEKGQVLSCGSNAFGQLGVPHGP 139

Query: 302 DMGMFPVDINF---HPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGP 358
              + P  I       V +++GL H+LA      +  TG    +  WG   +S   R+ P
Sbjct: 140 RKCVVPQAIECLREKVVCVAAGLRHALA------TTATG---SVFQWGTGLASSGRRLCP 190

Query: 359 -DNVPLVVEGLE 369
             N+PL +   E
Sbjct: 191 GQNLPLFLTAKE 202



 Score = 58.2 bits (139), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 82/311 (26%), Positives = 124/311 (39%), Gaps = 50/311 (16%)

Query: 76  SLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSA-I 134
           S  V+    ++AWG N+  QLG G  E       P+++    Q     +   G   SA +
Sbjct: 8   SETVSAAAVLFAWGANSYGQLGLGHKEDVFL---PQQLSDFCQAGCIKSVTGGGGHSAVV 64

Query: 135 GDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLF 194
            D G L+V G +K GQLGLG    E +  +  + L G  I +V+ GW   +  TE G++ 
Sbjct: 65  TDGGDLFVCGLNKDGQLGLGH-TEEVLRFTICKPLRGCPIRQVACGWDFTIMLTEKGQVL 123

Query: 195 GWGYSADGRIGNLGKALESSPLDSNIDRSSESDQE----------------ISSSTIEKA 238
             G +A G++G     +   P    + ++ E  +E                 + S  +  
Sbjct: 124 SCGSNAFGQLG-----VPHGPRKCVVPQAIECLREKVVCVAAGLRHALATTATGSVFQWG 178

Query: 239 QKLVSEG--MEKEKYMPIIW---EPFLVEGVEVVDIAC---GFDHSLVLGRNGVLLSCGS 290
             L S G  +   + +P+     EP  V G+E     C   G DHS  L   G L   G 
Sbjct: 179 TGLASSGRRLCPGQNLPLFLTAKEPSRVTGLENSTAVCAVAGSDHSASLTDTGELYVWGR 238

Query: 291 NVYGQLGREKQDMGMFPVDINFHP------VSISSGLGHSLAICEVRSSNVTGGARGIVS 344
           N +GQL      + + P  I  H        ++ SG  H +A  E            + +
Sbjct: 239 NKHGQLASRAVFLPL-PQRIEAHYFQDEKVTAVWSGWTHLVAKTETGK---------VFT 288

Query: 345 WGWNRSSQLGR 355
           WG     QLGR
Sbjct: 289 WGRADYGQLGR 299


>gi|326518338|dbj|BAJ88198.1| predicted protein [Hordeum vulgare subsp. vulgare]
 gi|326519062|dbj|BAJ96530.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 441

 Score =  102 bits (253), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 91/347 (26%), Positives = 150/347 (43%), Gaps = 65/347 (18%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPS-DVTSVSAGHYHSLAVTNNGAVWA 87
           V S+G G  G LG   S      D + P  V  L    +  ++ G  H LAVT  G V +
Sbjct: 88  VYSWGWGDFGRLGHGNST-----DVFTPQPVKALQGIKIKQLACGDSHCLAVTMAGEVLS 142

Query: 88  WGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSK 147
           WGRN   QLG G  E       P+ ++  + ++V    A    ++A+ +DG ++ WG  +
Sbjct: 143 WGRNQNGQLGLGTTEDSLL---PQTIQAFEGISVKMIAAGAEHTAAVTEDGDIYGWGWGR 199

Query: 148 RGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNL 207
            G LGLG D  +  VP +V ++ G+K+V V+ GW H +  +  G L+ +G+S  G++G+ 
Sbjct: 200 YGNLGLG-DRNDRFVPEKVSSVEGDKMVLVACGWRHTITVSSSGSLYTYGWSKYGQLGH- 257

Query: 208 GKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVV 267
                    D  +    E+ ++ S+S                                  
Sbjct: 258 -----GDFEDHLVPHKVEALKDSSTS---------------------------------- 278

Query: 268 DIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFHP----VSISSGLGH 323
            I+ G+ H++ L  +G L   G N +GQ+G         P  +NF        ++ G  H
Sbjct: 279 QISGGWRHTMALTSDGKLYGWGWNKFGQVGAGDNADHCSPAQVNFPEEQKVAQVACGWRH 338

Query: 324 SLAICEVRSSNVTGGARGIVSWGWNRSSQLGR--MGPDNVPLVVEGL 368
           +LA  E ++         + +WG   S QLG   +   N P++++ L
Sbjct: 339 TLAFTEKKN---------VFAWGRGTSGQLGHGEIVDRNTPVIIDAL 376



 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 84/313 (26%), Positives = 139/313 (44%), Gaps = 38/313 (12%)

Query: 63  PSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVC 122
           P  V  VSAG  HS+A+     +  WGR  + QLG G  E R     P  + G D   + 
Sbjct: 13  PPAVVLVSAGASHSVALLAGNVLCTWGRGEDGQLGHGDAEDRLV---PTVISGFDAPGIT 69

Query: 123 AAFASGVVSSAIGDD-GSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGW 181
           +       ++A  +D   ++ WG    G+LG G   T+   P  V+AL G KI +++ G 
Sbjct: 70  SVICGADHTTAYSEDEHQVYSWGWGDFGRLGHGNS-TDVFTPQPVKALQGIKIKQLACGD 128

Query: 182 GHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKL 241
            H LA T  G++  WG + +G++G LG   E S L   I        ++ ++  E    +
Sbjct: 129 SHCLAVTMAGEVLSWGRNQNGQLG-LGTT-EDSLLPQTIQAFEGISVKMIAAGAEHTAAV 186

Query: 242 VSE----------------GMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVL 285
             +                G   ++++P   +   VEG ++V +ACG+ H++ +  +G L
Sbjct: 187 TEDGDIYGWGWGRYGNLGLGDRNDRFVPE--KVSSVEGDKMVLVACGWRHTITVSSSGSL 244

Query: 286 LSCGSNVYGQLGREKQDMGMFPVDI----NFHPVSISSGLGHSLAICEVRSSNVTGGARG 341
            + G + YGQLG    +  + P  +    +     IS G  H++A+              
Sbjct: 245 YTYGWSKYGQLGHGDFEDHLVPHKVEALKDSSTSQISGGWRHTMALTSDGK--------- 295

Query: 342 IVSWGWNRSSQLG 354
           +  WGWN+  Q+G
Sbjct: 296 LYGWGWNKFGQVG 308


>gi|242071255|ref|XP_002450904.1| hypothetical protein SORBIDRAFT_05g020900 [Sorghum bicolor]
 gi|241936747|gb|EES09892.1| hypothetical protein SORBIDRAFT_05g020900 [Sorghum bicolor]
          Length = 418

 Score =  102 bits (253), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 103/343 (30%), Positives = 159/343 (46%), Gaps = 45/343 (13%)

Query: 32  FGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVT----SVSAGHYHSLAVTNNGAVWA 87
           +G+G  G LGL     GV    + PT  P   +       S++ G  H+L +T +G V+A
Sbjct: 35  WGNGDYGRLGL-----GVLESRWSPTVCPFFLARAADPPASLACGGAHTLFLTQSGRVFA 89

Query: 88  WGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSK 147
            G N+  QLG G+  +     +P  V G  +  V    A    S A+  DG L+VWG++ 
Sbjct: 90  TGLNDFGQLGVGSSVTHTL--EPVEVSGFHE-RVVEVSAGNHHSCAVTADGKLFVWGRNS 146

Query: 148 RGQLGLGKDITEAI-VPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGN 206
            GQLGLGK   + +  P++V+ L   +I  V+ G  H++A TE+G++  WG +  GR+G+
Sbjct: 147 GGQLGLGKGAGKVVSTPTKVDCLTDFRIKMVALGSEHSIAVTEEGEVLSWGAAGSGRLGH 206

Query: 207 ------LGKALESSPLDSNIDRSSESDQ-------EISSSTIEKAQKLVSEGMEKEKYMP 253
                 LG +L +S     + ++ +  +        + S+ I++   L   G + EK   
Sbjct: 207 GRQSSILGFSLTTSEYTPRLIKNFDGIKIKKIAAGMLHSACIDEKGTLFIFGQKTEKGFG 266

Query: 254 IIWEPFLVEGVEVV----DIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVD 309
              E F    VE +    ++ACG  H+ V+  +G L S GSN  G LG    DM   P  
Sbjct: 267 RSNEAFRPNIVEEIPFSEEVACGGYHTCVVTDSGDLYSWGSNENGCLGLGGTDMVCSPEI 326

Query: 310 INFH----PVS-ISSGLGHSLAICEVRSSNVTGGARGIVSWGW 347
           +       PVS +S G  H+  I              I +WGW
Sbjct: 327 LKSSLFKLPVSKVSCGWKHTAVI----------SGDDIYTWGW 359



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 86/334 (25%), Positives = 138/334 (41%), Gaps = 39/334 (11%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAW 88
           V + G    G LG+ +S+T       EP  V G    V  VSAG++HS AVT +G ++ W
Sbjct: 87  VFATGLNDFGQLGVGSSVT----HTLEPVEVSGFHERVVEVSAGNHHSCAVTADGKLFVW 142

Query: 89  GRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKR 148
           GRN+  QLG G    +   + P +V+ L    +         S A+ ++G +  WG +  
Sbjct: 143 GRNSGGQLGLGKGAGKVV-STPTKVDCLTDFRIKMVALGSEHSIAVTEEGEVLSWGAAGS 201

Query: 149 GQLGLGKD--------ITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSA 200
           G+LG G+          T    P  ++   G KI K++ G  H+    E G LF +G   
Sbjct: 202 GRLGHGRQSSILGFSLTTSEYTPRLIKNFDGIKIKKIAAGMLHSACIDEKGTLFIFGQKT 261

Query: 201 DGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYM-------- 252
           +   G   +A   + ++        +     +  +  +  L S G  +   +        
Sbjct: 262 EKGFGRSNEAFRPNIVEEIPFSEEVACGGYHTCVVTDSGDLYSWGSNENGCLGLGGTDMV 321

Query: 253 --PIIWEPFLVEGVEVVDIACGFDHSLVL-----------GRNGVLLSCGSNVYGQLGR- 298
             P I +  L + + V  ++CG+ H+ V+           G NG     G +  GQLG  
Sbjct: 322 CSPEILKSSLFK-LPVSKVSCGWKHTAVISGDDIYTWGWGGANGTFFEEGHSSGGQLGHG 380

Query: 299 ---EKQDMGMFPVDINFHPVSISSGLGHSLAICE 329
              +  +  M P   N   V +S G  H+ AI E
Sbjct: 381 NDVDYFEPMMVPFGKNARAVHVSCGFNHTGAIYE 414



 Score = 39.7 bits (91), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 36/115 (31%), Positives = 56/115 (48%), Gaps = 14/115 (12%)

Query: 245 GMEKEKYMPIIWEPFLVEGVEV-VDIACGFDHSLVLGRNGVLLSCGSNVYGQLGR-EKQD 302
           G+ + ++ P +   FL    +    +ACG  H+L L ++G + + G N +GQLG      
Sbjct: 46  GVLESRWSPTVCPFFLARAADPPASLACGGAHTLFLTQSGRVFATGLNDFGQLGVGSSVT 105

Query: 303 MGMFPVDIN-FHP--VSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLG 354
             + PV+++ FH   V +S+G  HS A        VT   +  V WG N   QLG
Sbjct: 106 HTLEPVEVSGFHERVVEVSAGNHHSCA--------VTADGKLFV-WGRNSGGQLG 151


>gi|224495959|ref|NP_001139096.1| probable E3 ubiquitin-protein ligase HERC3 [Danio rerio]
          Length = 1046

 Score =  102 bits (253), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 78/266 (29%), Positives = 124/266 (46%), Gaps = 16/266 (6%)

Query: 66  VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAF 125
           ++ VS G  HSLAV   G V+AWG  +  QLG G  E       P+ ++ L +  +    
Sbjct: 86  ISGVSCGQAHSLAVNEQGQVFAWGAGDGGQLGLGTAEEAV--RVPRLIKKLCEHRISQVM 143

Query: 126 ASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHAL 185
                  A+  DG L+VWG++  GQLGLGK     + P  +++L G  + ++S G  H+ 
Sbjct: 144 CGNHHCIALSKDGQLFVWGENSSGQLGLGKGEPSTLSPQPLKSLCGIPLTQISAGGDHSF 203

Query: 186 AQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSE----SDQEISSSTIEKAQKL 241
           A +  G +FGWG ++ G++G   +   + P      RS +    S  E  ++ + K   L
Sbjct: 204 ALSFSGAVFGWGKNSAGQLGLNDEQDRAVPCHIKFLRSQKVVYISCGEEHTAALTKEGGL 263

Query: 242 VSE--------GMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVL-GRNGVLLSCGSNV 292
            +         G +  +  P+      + G EV  IACG +H+L      G++ + G N 
Sbjct: 264 FTFGNGSKGQLGHDSTRNEPLPRRVMELMGTEVSQIACGRNHTLAFVPSTGLIYAFGCNT 323

Query: 293 YGQLGREKQDMGMFPVDI-NFHPVSI 317
            GQLG   +     PV + N  P+ I
Sbjct: 324 QGQLGTGIRGSAKSPVPVSNIQPLCI 349



 Score = 87.8 bits (216), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 83/302 (27%), Positives = 126/302 (41%), Gaps = 57/302 (18%)

Query: 66  VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAF 125
           +  V+ G+ HSL + ++G+V+  G N+  QLG     SR     P+ V  LD   +    
Sbjct: 36  LKEVACGNQHSLFLLHDGSVYTCGSNSCGQLGHDKGGSR-----PELVGALDAQKISGVS 90

Query: 126 ASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHAL 185
                S A+ + G ++ WG    GQLGLG       VP  ++ L   +I +V  G  H +
Sbjct: 91  CGQAHSLAVNEQGQVFAWGAGDGGQLGLGTAEEAVRVPRLIKKLCEHRISQVMCGNHHCI 150

Query: 186 AQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEG 245
           A ++DG+LF WG ++ G++G LGK           + S+ S Q + S             
Sbjct: 151 ALSKDGQLFVWGENSSGQLG-LGKG----------EPSTLSPQPLKS------------- 186

Query: 246 MEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGM 305
                          + G+ +  I+ G DHS  L  +G +   G N  GQLG   +    
Sbjct: 187 ---------------LCGIPLTQISAGGDHSFALSFSGAVFGWGKNSAGQLGLNDEQDRA 231

Query: 306 FPVDINF----HPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPDNV 361
            P  I F      V IS G  H+ A+ +           G+ ++G     QLG     N 
Sbjct: 232 VPCHIKFLRSQKVVYISCGEEHTAALTK---------EGGLFTFGNGSKGQLGHDSTRNE 282

Query: 362 PL 363
           PL
Sbjct: 283 PL 284



 Score = 43.9 bits (102), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 62/245 (25%), Positives = 99/245 (40%), Gaps = 53/245 (21%)

Query: 140 LWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYS 199
           +  WG S  GQLG+G        P       G  + +V+ G  H+L    DG ++  G +
Sbjct: 2   MLCWGSSGAGQLGIGASEASVFEPRSCCVFDGRGLKEVACGNQHSLFLLHDGSVYTCGSN 61

Query: 200 ADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKL-VSE-------------- 244
           + G++G+  K      L   +D      Q+IS  +  +A  L V+E              
Sbjct: 62  SCGQLGH-DKGGSRPELVGALDA-----QKISGVSCGQAHSLAVNEQGQVFAWGAGDGGQ 115

Query: 245 ---GMEKEKYMPIIWEPFLVEGV---EVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGR 298
              G  +E     +  P L++ +    +  + CG  H + L ++G L   G N  GQLG 
Sbjct: 116 LGLGTAEEA----VRVPRLIKKLCEHRISQVMCGNHHCIALSKDGQLFVWGENSSGQLGL 171

Query: 299 EKQDMGMFPVDINFHPV---------SISSGLGHSLAICEVRSSNVTGGARGIVSWGWNR 349
            K +    P  ++  P+          IS+G  HS A+      + +G   G   WG N 
Sbjct: 172 GKGE----PSTLSPQPLKSLCGIPLTQISAGGDHSFAL------SFSGAVFG---WGKNS 218

Query: 350 SSQLG 354
           + QLG
Sbjct: 219 AGQLG 223


>gi|7305093|ref|NP_038817.1| secretion-regulating guanine nucleotide exchange factor [Mus
           musculus]
 gi|38257405|sp|Q80YD6.2|SRGEF_MOUSE RecName: Full=Secretion-regulating guanine nucleotide exchange
           factor; AltName: Full=Deafness locus-associated putative
           guanine nucleotide exchange factor; Short=DelGEF;
           AltName: Full=Guanine nucleotide exchange factor-related
           protein
 gi|6434206|emb|CAB60840.1| deafness locus associated putative guanine nucleotide exchange
           factor [Mus musculus]
 gi|110645832|gb|AAI19534.1| Secretion regulating guanine nucleotide exchange factor [Mus
           musculus]
 gi|110645834|gb|AAI19535.1| Secretion regulating guanine nucleotide exchange factor [Mus
           musculus]
 gi|127798601|gb|AAH49603.2| Secretion regulating guanine nucleotide exchange factor [Mus
           musculus]
 gi|148690982|gb|EDL22929.1| secretion regulating guanine nucleotide exchange factor [Mus
           musculus]
          Length = 464

 Score =  102 bits (253), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 94/322 (29%), Positives = 144/322 (44%), Gaps = 49/322 (15%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAW 88
           V+S G  + G LG+P            P  +  L   V  V+AG  H+LA T  G+V+ W
Sbjct: 122 VLSCGSNAFGQLGVPHGPR----KCVVPQAIECLREKVVCVAAGLRHALATTATGSVFQW 177

Query: 89  GR---NNEVQLGRGA-LESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWG 144
           G    ++  +L  G  L    T  +P RV GL+      A A    S+++ D G L+VWG
Sbjct: 178 GTGLASSGRRLCPGQNLPLFLTAKEPSRVTGLENSTAVCAVAGSDHSASLTDTGELYVWG 237

Query: 145 KSKRGQLGLGKDITEAI---VPSRVEA--LAGEKIVKVSFGWGHALAQTEDGKLFGWGYS 199
           ++K GQL      + A+   +P R+EA     EK+  V  GW H +A+TE GK+F WG +
Sbjct: 238 RNKHGQLA-----SRAVFLPLPQRIEAHYFQDEKVTAVWSGWTHLVAKTETGKVFTWGRA 292

Query: 200 ADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPF 259
                G LG+ LE                  +   +E+   L  +G +     P+     
Sbjct: 293 ---DYGQLGRRLEPPE---------------AQKPVEQDSSLAFQGPQNSVPSPL----H 330

Query: 260 LVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFHPVS--- 316
            + G    +I+CG +H+L + R+    S G N +G  G   +     P  +   P S   
Sbjct: 331 CLTG--ATEISCGSEHNLAVIRDKC-CSWGWNEHGMCGDGTESNVWTPTPVQALPPSPSR 387

Query: 317 ---ISSGLGHSLAICEVRSSNV 335
              +  G GHSLA+C++ +  V
Sbjct: 388 LLLVGCGAGHSLAVCQLPAHPV 409



 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 97/391 (24%), Positives = 156/391 (39%), Gaps = 67/391 (17%)

Query: 24  ASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSD--VTSVSAGHYHSLAVTN 81
           ++   + ++G  S G LGL     G   D + P ++        + SV+ G  HS  VT+
Sbjct: 12  SAAAVLFAWGANSYGQLGL-----GHKEDVFLPQQLSDFCQAGCIKSVTGGGGHSAVVTD 66

Query: 82  NGAVWAWGRNNEVQLGRGALES--RATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGS 139
            G ++  G N + QLG G  E   R T   P R   + QV     F     +  + + G 
Sbjct: 67  GGDLFVCGLNKDGQLGLGHTEEVLRFTICKPLRGCPIRQVACGWDF-----TIMLTEKGQ 121

Query: 140 LWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGW--G 197
           +   G +  GQLG+     + +VP  +E L  EK+V V+ G  HALA T  G +F W  G
Sbjct: 122 VLSCGSNAFGQLGVPHGPRKCVVPQAIECLR-EKVVCVAAGLRHALATTATGSVFQWGTG 180

Query: 198 YSADGRIGNLGKAL----------ESSPLDSNIDRSSESDQEISSSTIEKAQKLV----- 242
            ++ GR    G+ L            + L+++    + +  + S+S  +  +  V     
Sbjct: 181 LASSGRRLCPGQNLPLFLTAKEPSRVTGLENSTAVCAVAGSDHSASLTDTGELYVWGRNK 240

Query: 243 -SEGMEKEKYMPIIW--EPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGRE 299
             +   +  ++P+    E    +  +V  +  G+ H +     G + + G   YGQLGR 
Sbjct: 241 HGQLASRAVFLPLPQRIEAHYFQDEKVTAVWSGWTHLVAKTETGKVFTWGRADYGQLGRR 300

Query: 300 ----------KQDMGMF----------PVDINFHPVSISSGLGHSLAICEVRSSNVTGGA 339
                     +QD  +           P+        IS G  H+LA+  +R        
Sbjct: 301 LEPPEAQKPVEQDSSLAFQGPQNSVPSPLHCLTGATEISCGSEHNLAV--IRDK------ 352

Query: 340 RGIVSWGWNRSSQLGRMGPDNV--PLVVEGL 368
               SWGWN     G     NV  P  V+ L
Sbjct: 353 --CCSWGWNEHGMCGDGTESNVWTPTPVQAL 381



 Score = 65.9 bits (159), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 70/252 (27%), Positives = 107/252 (42%), Gaps = 60/252 (23%)

Query: 124 AFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVK-VSFGWG 182
           + AS  VS+A      L+ WG +  GQLGLG    +  +P ++        +K V+ G G
Sbjct: 5   SCASETVSAA----AVLFAWGANSYGQLGLGHK-EDVFLPQQLSDFCQAGCIKSVTGGGG 59

Query: 183 HALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLV 242
           H+   T+ G LF  G + DG++G LG                   +E+   TI K     
Sbjct: 60  HSAVVTDGGDLFVCGLNKDGQLG-LGHT-----------------EEVLRFTICKP---- 97

Query: 243 SEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLG-REKQ 301
                             + G  +  +ACG+D +++L   G +LSCGSN +GQLG     
Sbjct: 98  ------------------LRGCPIRQVACGWDFTIMLTEKGQVLSCGSNAFGQLGVPHGP 139

Query: 302 DMGMFPVDINF---HPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGP 358
              + P  I       V +++GL H+LA      +  TG    +  WG   +S   R+ P
Sbjct: 140 RKCVVPQAIECLREKVVCVAAGLRHALA------TTATG---SVFQWGTGLASSGRRLCP 190

Query: 359 -DNVPLVVEGLE 369
             N+PL +   E
Sbjct: 191 GQNLPLFLTAKE 202



 Score = 58.2 bits (139), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 82/311 (26%), Positives = 124/311 (39%), Gaps = 50/311 (16%)

Query: 76  SLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSA-I 134
           S  V+    ++AWG N+  QLG G  E       P+++    Q     +   G   SA +
Sbjct: 8   SETVSAAAVLFAWGANSYGQLGLGHKEDVFL---PQQLSDFCQAGCIKSVTGGGGHSAVV 64

Query: 135 GDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLF 194
            D G L+V G +K GQLGLG    E +  +  + L G  I +V+ GW   +  TE G++ 
Sbjct: 65  TDGGDLFVCGLNKDGQLGLGH-TEEVLRFTICKPLRGCPIRQVACGWDFTIMLTEKGQVL 123

Query: 195 GWGYSADGRIGNLGKALESSPLDSNIDRSSESDQE----------------ISSSTIEKA 238
             G +A G++G     +   P    + ++ E  +E                 + S  +  
Sbjct: 124 SCGSNAFGQLG-----VPHGPRKCVVPQAIECLREKVVCVAAGLRHALATTATGSVFQWG 178

Query: 239 QKLVSEG--MEKEKYMPIIW---EPFLVEGVEVVDIAC---GFDHSLVLGRNGVLLSCGS 290
             L S G  +   + +P+     EP  V G+E     C   G DHS  L   G L   G 
Sbjct: 179 TGLASSGRRLCPGQNLPLFLTAKEPSRVTGLENSTAVCAVAGSDHSASLTDTGELYVWGR 238

Query: 291 NVYGQLGREKQDMGMFPVDINFHP------VSISSGLGHSLAICEVRSSNVTGGARGIVS 344
           N +GQL      + + P  I  H        ++ SG  H +A  E            + +
Sbjct: 239 NKHGQLASRAVFLPL-PQRIEAHYFQDEKVTAVWSGWTHLVAKTETGK---------VFT 288

Query: 345 WGWNRSSQLGR 355
           WG     QLGR
Sbjct: 289 WGRADYGQLGR 299


>gi|327260067|ref|XP_003214857.1| PREDICTED: secretion-regulating guanine nucleotide exchange
           factor-like [Anolis carolinensis]
          Length = 409

 Score =  102 bits (253), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 90/312 (28%), Positives = 135/312 (43%), Gaps = 41/312 (13%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAW 88
           V S G  S G LG+  +  G    +    R+  L   V +V+AG  H+LAVT NG+V+ W
Sbjct: 118 VFSCGSNSFGQLGISQTSEG----STVSKRIESLQEKVVNVAAGLRHALAVTENGSVFQW 173

Query: 89  GRNNEVQLGRGA----LESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWG 144
           G     Q  R      + S      P +V GL+   V    +    ++A+ D+G L+VWG
Sbjct: 174 GIGMSSQAKRACQGEMVPSFLRARQPCKVTGLEDARVKIVASGSSHATALTDEGELYVWG 233

Query: 145 KSKRGQLGLGKDITEAIVPSRVEA--LAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADG 202
            +K  QL    D    + P +++A    GEK+ +V  GW H +AQTE GK+F WG +  G
Sbjct: 234 NNKHKQLVNKDDFV--LKPQKIDAHYFGGEKVRRVWNGWTHMVAQTEMGKVFTWGRADYG 291

Query: 203 RIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVE 262
           ++G  G   E    D      +   + + S  +  A    S+                  
Sbjct: 292 QLGRSGLPYEQMGQDGKASDENSVKEPLHSPALVPALTGASQ------------------ 333

Query: 263 GVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGR--EKQDMGMFPVDI--NFHPVSIS 318
                 IACG +H+L +   G   S G N +G  G   E       P+D+  +   + + 
Sbjct: 334 ------IACGSEHNLAI-VGGQCFSWGWNEHGMCGNGTEANVCAPQPLDVLSSAKLLYVG 386

Query: 319 SGLGHSLAICEV 330
            G GHS+A C  
Sbjct: 387 CGAGHSMAFCHF 398



 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 92/360 (25%), Positives = 148/360 (41%), Gaps = 64/360 (17%)

Query: 22  RSASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSD---VTSVSAGHYHSLA 78
           R A   A+ ++G  S G LGL     G   D + P  + G   +   V +++ G  HS  
Sbjct: 5   REAPAQALFTWGANSYGQLGL-----GHREDVFLPQVLKGFLCNRETVKNITGGGGHSAV 59

Query: 79  VTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDG 138
           +T+ G ++  G+N   QLG G  E    +     + G   + V   +   ++   +   G
Sbjct: 60  LTDTGELFLCGQNKNGQLGLGHTEDVTHFKLCSSLCGCSVIQVACGWDFTII---LAGSG 116

Query: 139 SLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGY 198
            ++  G +  GQLG+ +    + V  R+E+L  EK+V V+ G  HALA TE+G +F WG 
Sbjct: 117 QVFSCGSNSFGQLGISQTSEGSTVSKRIESLQ-EKVVNVAAGLRHALAVTENGSVFQWG- 174

Query: 199 SADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEP 258
                IG          + S   R+ +   E+  S +   Q     G+E  +        
Sbjct: 175 -----IG----------MSSQAKRACQG--EMVPSFLRARQPCKVTGLEDAR-------- 209

Query: 259 FLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFHPV--- 315
                  V  +A G  H+  L   G L   G+N + QL   K D  + P  I+ H     
Sbjct: 210 -------VKIVASGSSHATALTDEGELYVWGNNKHKQL-VNKDDFVLKPQKIDAHYFGGE 261

Query: 316 ---SISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPDNVPLVVEGLEGES 372
               + +G  H +A  E+           + +WG     QLGR G   +P    G +G++
Sbjct: 262 KVRRVWNGWTHMVAQTEMGK---------VFTWGRADYGQLGRSG---LPYEQMGQDGKA 309


>gi|55832768|gb|AAV66897.1| truncated HERC6 [Homo sapiens]
          Length = 322

 Score =  102 bits (253), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 86/270 (31%), Positives = 128/270 (47%), Gaps = 45/270 (16%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTR-VPGLPSDVTSVSAGHYHSLAVTNNGAVWA 87
           V+S GD S+G LG   +  G   +  EP + +  L  D+  VS G  HSLAV + G V+A
Sbjct: 44  VLSCGDNSRGQLGRRGAQRG---ELPEPIQALETLIVDL--VSCGKEHSLAVCHKGRVFA 98

Query: 88  WGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSK 147
           WG  +E QLG G  E +     PK++  L+ + +         S A+  D  ++ WGK+ 
Sbjct: 99  WGAGSEGQLGIG--EFKEISFTPKKIMTLNDIKIIQVSCGHYHSLALSKDSQVFSWGKNS 156

Query: 148 RGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNL 207
            GQLGLGK+      P RV +L G  + +V+ G  H+ A +  G  FGWG ++ G++   
Sbjct: 157 HGQLGLGKEFPSQASPQRVRSLEGIPLAQVAAGGAHSFALSLCGTSFGWGSNSAGQLALS 216

Query: 208 GKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVV 267
           G+ +   P+ SN                    K +S G  K               + VV
Sbjct: 217 GRNV---PVQSN--------------------KPLSVGALKN--------------LGVV 239

Query: 268 DIACGFDHSLVLGRNGVLLSCGSNVYGQLG 297
            I+CG  H+ VL ++G + + G N  GQLG
Sbjct: 240 YISCGDAHTAVLTQDGKVFTFGDNRSGQLG 269



 Score = 82.4 bits (202), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 90/328 (27%), Positives = 143/328 (43%), Gaps = 53/328 (16%)

Query: 50  GGDAYE--PTRVPGLP-SDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRAT 106
           G D+ E    R  G P +++   ++G  HSL +  N  V + G N+  QLGR   + R  
Sbjct: 6   GADSRELQRRRTAGSPGAELLQAASGERHSLLLLTNHRVLSCGDNSRGQLGRRGAQ-RGE 64

Query: 107 WNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRV 166
             +P  ++ L+ + V         S A+   G ++ WG    GQLG+G+    +  P ++
Sbjct: 65  LPEP--IQALETLIVDLVSCGKEHSLAVCHKGRVFAWGAGSEGQLGIGEFKEISFTPKKI 122

Query: 167 EALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSES 226
             L   KI++VS G  H+LA ++D ++F WG ++ G++G LGK             S  S
Sbjct: 123 MTLNDIKIIQVSCGHYHSLALSKDSQVFSWGKNSHGQLG-LGKEFP----------SQAS 171

Query: 227 DQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLL 286
            Q + S                            +EG+ +  +A G  HS  L   G   
Sbjct: 172 PQRVRS----------------------------LEGIPLAQVAAGGAHSFALSLCGTSF 203

Query: 287 SCGSNVYGQLGREKQDMGMFPVDINFHPVSISS--GLGHSLAICEVRSSNVTGGARGIVS 344
             GSN  GQL    +++   PV  N  P+S+ +   LG     C    + V      + +
Sbjct: 204 GWGSNSAGQLALSGRNV---PVQSN-KPLSVGALKNLGVVYISCGDAHTAVLTQDGKVFT 259

Query: 345 WGWNRSSQLGRM-GPDNV-PLVVEGLEG 370
           +G NRS QLG    P+   P +VE ++G
Sbjct: 260 FGDNRSGQLGYSPTPEKRGPQLVERIDG 287



 Score = 46.6 bits (109), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 42/148 (28%), Positives = 61/148 (41%), Gaps = 10/148 (6%)

Query: 27  TAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRV---PGLPSDVTSVSAGHYHSLAVTNNG 83
           + V S+G  S G LGL             P RV    G+P  +  V+AG  HS A++  G
Sbjct: 147 SQVFSWGKNSHGQLGLGKEFP----SQASPQRVRSLEGIP--LAQVAAGGAHSFALSLCG 200

Query: 84  AVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVW 143
             + WG N+  QL           N P  V  L  + V         ++ +  DG ++ +
Sbjct: 201 TSFGWGSNSAGQLALSGRNVPVQSNKPLSVGALKNLGVVYISCGDAHTAVLTQDGKVFTF 260

Query: 144 GKSKRGQLGLGKDITEAIVPSRVEALAG 171
           G ++ GQLG      E   P  VE + G
Sbjct: 261 GDNRSGQLGY-SPTPEKRGPQLVERIDG 287


>gi|421871589|ref|ZP_16303210.1| regulator of chromosome condensation family protein [Brevibacillus
           laterosporus GI-9]
 gi|372459473|emb|CCF12759.1| regulator of chromosome condensation family protein [Brevibacillus
           laterosporus GI-9]
          Length = 392

 Score =  101 bits (252), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 102/363 (28%), Positives = 168/363 (46%), Gaps = 56/363 (15%)

Query: 17  SRIFMRSASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHS 76
           +R FM    G+ +   G  + G LG  +    V G    P  V  L SDV  V  G  H+
Sbjct: 41  NRTFMVKKDGSVIYGTGSDANGGLGSSS----VKGKTTSPVPVDDL-SDVLMVDTGTSHT 95

Query: 77  LAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGD 136
           +A+  +G VW WG +   +LG    ++++T   P  V+ L  V    A  +   + A+ +
Sbjct: 96  VALQKDGTVWTWGWSAYGELGN--EKAKSTEKTPHHVKWLSDVKQVRAGEN--FTLALKE 151

Query: 137 DGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGW 196
           DG++W +GK++ GQLG G   T  + P +V  L    IV +  G   +LA +EDG ++ W
Sbjct: 152 DGTVWAFGKNRSGQLGDGTTETR-VKPVQVSGLT--DIVAIDAGEEFSLALSEDGTVWAW 208

Query: 197 GYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKA----------------QK 240
           G ++ G++GN  +     P+     + SE    I+ ST EK                 Q 
Sbjct: 209 GNNSVGQLGNGTREKALQPV-----QVSELTDVIAISTGEKQGYAVTSNGDVYGWGYNQG 263

Query: 241 LVSEGMEKEKYMPIIWEPFLVEGV-EVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGR- 298
            + +G +K    P+     L++G+ +V+ +  G  H+L L  +G + + G+N +GQLG  
Sbjct: 264 KLGDGTKKSSNSPV-----LIDGIYDVIAVDSGKQHTLALKEDGTVWAWGTNTHGQLGYG 318

Query: 299 EKQDMGMFPVDINFHP-------VSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSS 351
              +  M P  +           V+I +G  HS AI +  +         + SWG+N + 
Sbjct: 319 TPVNYSMTPNQVFLESTEPLNQIVAIDAGGFHSHAIKKDGT---------VWSWGFNSNG 369

Query: 352 QLG 354
           +LG
Sbjct: 370 ELG 372



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 55/167 (32%), Positives = 84/167 (50%), Gaps = 15/167 (8%)

Query: 11  HVNVLTSRIFMRSA--SGTAVVSFGD-----GSQGALGLPTSLTGVGGDAYEPTRVPGLP 63
            V+ LT  I + +    G AV S GD      +QG LG      G    +  P  + G+ 
Sbjct: 229 QVSELTDVIAISTGEKQGYAVTSNGDVYGWGYNQGKLG-----DGTKKSSNSPVLIDGI- 282

Query: 64  SDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVN-VC 122
            DV +V +G  H+LA+  +G VWAWG N   QLG G   + +   +   +E  + +N + 
Sbjct: 283 YDVIAVDSGKQHTLALKEDGTVWAWGTNTHGQLGYGTPVNYSMTPNQVFLESTEPLNQIV 342

Query: 123 AAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEAL 169
           A  A G  S AI  DG++W WG +  G+LGLG    + + P+++E +
Sbjct: 343 AIDAGGFHSHAIKKDGTVWSWGFNSNGELGLGHS-KKQMYPAKIETI 388



 Score = 51.2 bits (121), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 61/257 (23%), Positives = 115/257 (44%), Gaps = 42/257 (16%)

Query: 134 IGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKL 193
           +  DGS+ ++G       GLG    +    S V       ++ V  G  H +A  +DG +
Sbjct: 46  VKKDGSV-IYGTGSDANGGLGSSSVKGKTTSPVPVDDLSDVLMVDTGTSHTVALQKDGTV 104

Query: 194 FGWGYSADGRIGN-LGKALESSPLD-------------SNIDRSSESDQEISSSTIEKAQ 239
           + WG+SA G +GN   K+ E +P                N   + + D  + +    ++ 
Sbjct: 105 WTWGWSAYGELGNEKAKSTEKTPHHVKWLSDVKQVRAGENFTLALKEDGTVWAFGKNRSG 164

Query: 240 KLVSEGMEKEKYMPIIWEPFLVEGV-EVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGR 298
           +L  +G  + +  P+      V G+ ++V I  G + SL L  +G + + G+N  GQLG 
Sbjct: 165 QL-GDGTTETRVKPV-----QVSGLTDIVAIDAGEEFSLALSEDGTVWAWGNNSVGQLGN 218

Query: 299 EKQDMGMFPVDIN--FHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRM 356
             ++  + PV ++     ++IS+G     A+    + +V G       WG+N+    G++
Sbjct: 219 GTREKALQPVQVSELTDVIAISTGEKQGYAVTS--NGDVYG-------WGYNQ----GKL 265

Query: 357 G-----PDNVPLVVEGL 368
           G       N P++++G+
Sbjct: 266 GDGTKKSSNSPVLIDGI 282


>gi|406991558|gb|EKE11048.1| hypothetical protein ACD_15C00149G0001, partial [uncultured
           bacterium]
          Length = 1643

 Score =  101 bits (252), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 117/398 (29%), Positives = 172/398 (43%), Gaps = 88/398 (22%)

Query: 13  NVLTSR-----IFMRSASGT-AVVSFGDGSQG-ALGLPTSLTG------------VGGDA 53
           N LT R     I    A+G  + VSF DG  G A+   T   G            +G + 
Sbjct: 506 NALTERSLPFQILDTGATGNLSQVSFIDGGDGYAVAFKTDSDGSVWSWGKNDKGQLGNNT 565

Query: 54  YEPTRVP--------GLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRA 105
            +P R P        G   DV SVS+G YH++A+  +G VW WG N   QLG  A ++R 
Sbjct: 566 VDPVRTPISTWGPANGNIPDVQSVSSGRYHTIALKTDGTVWDWGGNGNGQLGTTAGQNRL 625

Query: 106 TWNDPKRVEGL----DQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAI 161
           T   P +V G     +  N+    A    S A   DG++W WG+   G+LG G  I+   
Sbjct: 626 T---PIQVRGPGGFGNLENIVEVAAGDYHSLARRSDGTVWAWGRGSLGELGDGTWISTRY 682

Query: 162 VPSRVEALAG----EKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLD 217
            P +V+  AG      +V +S G  +++A   DG ++ WG +  G++G+     ++ P+ 
Sbjct: 683 NPVQVKDAAGTGFLTNVVAISAGEDYSVALRSDGTVWAWGKNDRGQLGDNSTNYKNLPV- 741

Query: 218 SNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSL 277
                                Q L   G+    ++             V  I+ G +  L
Sbjct: 742 ---------------------QVL---GVGGAGFLN-----------NVSSISAGSNFVL 766

Query: 278 VLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDI-NFHPV-SISSGLGHSLAICEVRSSNV 335
           V   +G + S G N  GQLG       + P+ + N + V SIS+G  HSLA+        
Sbjct: 767 VAKNDGTVFSWGHNANGQLGDNTVSGKLTPIQVLNINNVSSISAGYAHSLALK------- 819

Query: 336 TGGARGIVSWGWNRSSQLGR-MGPDN--VPLVVEGLEG 370
           T G+  + SWGWN + QLG     DN  +PL V+   G
Sbjct: 820 TDGS--VWSWGWNGNGQLGEGTNIDNSLLPLQVKNSTG 855



 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 110/378 (29%), Positives = 163/378 (43%), Gaps = 57/378 (15%)

Query: 25  SGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRV-----PGLPSDVTSVSAGHYHSLAV 79
           S  +V S+G+ + G LG  T +     D Y P +V      G  +D+  VSAG  HSLA+
Sbjct: 208 SDNSVWSWGENTSGQLGDKTLI-----DRYTPVQVVGAGGSGYLNDIEMVSAGTNHSLAL 262

Query: 80  TNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQV----NVCAAFASGVVSSAIG 135
            ++G VW+WG N+  QLG   +  +   N P +V G   +    NV +  A    S A+ 
Sbjct: 263 KSDGTVWSWGNNDNGQLGNNLVSLK---NIPVQVVGPGGIGVLSNVISVSAGEGYSLALK 319

Query: 136 DDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAG----EKIVKVSFGWGHALAQTEDG 191
            DG++W WGK+  GQLG    I E   P +V  + G      +  +S G  +ALA   DG
Sbjct: 320 SDGTVWSWGKNTVGQLG-DNTIVEKHYPVQVLGVGGVEFLSSVASISAGASYALAVKSDG 378

Query: 192 KLFGWGYSADGRIGNLGKALESSP-----------LDSNIDRSSESDQEI---SSSTI-- 235
            +  WG +  G++GN   A    P           L S I  S++    +   S  T+  
Sbjct: 379 TVVAWGKNDSGQLGNNSYADSYVPVQVLGVDGMGNLSSIISVSADGTHSLSLKSDGTVWS 438

Query: 236 ----EKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSN 291
               +K Q  ++  ++K+  + ++         ++V IA G   SL +  +G   S G +
Sbjct: 439 WGKNDKGQLGINSFIDKKTPVQVLDSTGTGFLTDIVSIATGNKFSLAVKNDGKAWSWGYD 498

Query: 292 VYGQLGREKQDMGMFPVDI-------NFHPVS-ISSGLGHSLAICEVRSSNVTGGARGIV 343
             GQLG         P  I       N   VS I  G G+++A         T     + 
Sbjct: 499 STGQLGDNALTERSLPFQILDTGATGNLSQVSFIDGGDGYAVAFK-------TDSDGSVW 551

Query: 344 SWGWNRSSQLGRMGPDNV 361
           SWG N   QLG    D V
Sbjct: 552 SWGKNDKGQLGNNTVDPV 569



 Score = 91.7 bits (226), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 81/285 (28%), Positives = 126/285 (44%), Gaps = 56/285 (19%)

Query: 32  FGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRN 91
            GD S     LP  + GVGG         G  ++V+S+SAG    L   N+G V++WG N
Sbjct: 729 LGDNSTNYKNLPVQVLGVGG--------AGFLNNVSSISAGSNFVLVAKNDGTVFSWGHN 780

Query: 92  NEVQLGRGALESRATWNDPKRVEGLDQV-NVCAAFASGVVSSAIGDDGSLWVWGKSKRGQ 150
              QLG   +  + T   P +V  ++ V ++ A +A    S A+  DGS+W WG +  GQ
Sbjct: 781 ANGQLGDNTVSGKLT---PIQVLNINNVSSISAGYAH---SLALKTDGSVWSWGWNGNGQ 834

Query: 151 LGLGKDITEAIVPSRVEALAG----EKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGN 206
           LG G +I  +++P +V+   G      I K++ G  H L    D   F WG + +G++GN
Sbjct: 835 LGEGTNIDNSLLPLQVKNSTGTGFLSDISKIATGSNHCLVMKSDNTAFAWGLNGNGQLGN 894

Query: 207 LGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEV 266
                ++ P+                      Q L S G                 GV  
Sbjct: 895 NSIVNKNLPV----------------------QVLNSNGSSG------------FTGVSF 920

Query: 267 VDIACGFDHSLVLGRNGVLL-SCGSNVYGQLGREKQDMGMFPVDI 310
           V+   GF +S ++  +  L+ + G N YG+LG  + D  + PV +
Sbjct: 921 VE--AGFANSTIIKSSDSLVWNWGINSYGELGNNRVDGTLLPVSV 963



 Score = 89.0 bits (219), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 103/370 (27%), Positives = 159/370 (42%), Gaps = 59/370 (15%)

Query: 28  AVVSFGDGSQGALG--------LPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAV 79
            V S+G  + G LG         P  + GVGG  +         S V S+SAG  ++LAV
Sbjct: 323 TVWSWGKNTVGQLGDNTIVEKHYPVQVLGVGGVEF--------LSSVASISAGASYALAV 374

Query: 80  TNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQV----NVCAAFASGVVSSAIG 135
            ++G V AWG+N+  QLG  +         P +V G+D +    ++ +  A G  S ++ 
Sbjct: 375 KSDGTVVAWGKNDSGQLGNNSYADSYV---PVQVLGVDGMGNLSSIISVSADGTHSLSLK 431

Query: 136 DDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGE----KIVKVSFGWGHALAQTEDG 191
            DG++W WGK+ +GQLG+   I +   P +V    G      IV ++ G   +LA   DG
Sbjct: 432 SDGTVWSWGKNDKGQLGINSFIDKK-TPVQVLDSTGTGFLTDIVSIATGNKFSLAVKNDG 490

Query: 192 KLFGWGYSADGRIGNLGKALESSPLD-------------SNID--------RSSESDQEI 230
           K + WGY + G++G+      S P               S ID          ++SD  +
Sbjct: 491 KAWSWGYDSTGQLGDNALTERSLPFQILDTGATGNLSQVSFIDGGDGYAVAFKTDSDGSV 550

Query: 231 SSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGS 290
            S       +L +  ++  +     W P      +V  ++ G  H++ L  +G +   G 
Sbjct: 551 WSWGKNDKGQLGNNTVDPVRTPISTWGPANGNIPDVQSVSSGRYHTIALKTDGTVWDWGG 610

Query: 291 NVYGQLGREKQDMGMFPVDINFHPVSISSGLGHSLAICEVRSSNVTGGAR---GIVSWGW 347
           N  GQLG       + P+      V    G G+   I EV + +    AR   G V W W
Sbjct: 611 NGNGQLGTTAGQNRLTPIQ-----VRGPGGFGNLENIVEVAAGDYHSLARRSDGTV-WAW 664

Query: 348 NRSSQLGRMG 357
            R S LG +G
Sbjct: 665 GRGS-LGELG 673



 Score = 74.3 bits (181), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 88/315 (27%), Positives = 137/315 (43%), Gaps = 81/315 (25%)

Query: 64  SDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEG------LD 117
           S V ++SAG+   LA+ ++ +VW+WG N   QLG   L  R T   P +V G      L+
Sbjct: 191 SGVAAISAGNSFVLAIKSDNSVWSWGENTSGQLGDKTLIDRYT---PVQVVGAGGSGYLN 247

Query: 118 QVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLG----KDITEAIV-PSRVEALAGE 172
            + + +A  +   S A+  DG++W WG +  GQLG      K+I   +V P  +  L+  
Sbjct: 248 DIEMVSAGTNH--SLALKSDGTVWSWGNNDNGQLGNNLVSLKNIPVQVVGPGGIGVLS-- 303

Query: 173 KIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISS 232
            ++ VS G G++LA   DG ++ WG +  G++G                     D  I  
Sbjct: 304 NVISVSAGEGYSLALKSDGTVWSWGKNTVGQLG---------------------DNTI-- 340

Query: 233 STIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVE----VVDIACGFDHSLVLGRNGVLLSC 288
                           EK+ P+  +   V GVE    V  I+ G  ++L +  +G +++ 
Sbjct: 341 ---------------VEKHYPV--QVLGVGGVEFLSSVASISAGASYALAVKSDGTVVAW 383

Query: 289 GSNVYGQLGREKQDMGMFPVDI-------NFHP-VSISSGLGHSLAICEVRSSNVTGGAR 340
           G N  GQLG         PV +       N    +S+S+   HSL++           + 
Sbjct: 384 GKNDSGQLGNNSYADSYVPVQVLGVDGMGNLSSIISVSADGTHSLSLK----------SD 433

Query: 341 GIV-SWGWNRSSQLG 354
           G V SWG N   QLG
Sbjct: 434 GTVWSWGKNDKGQLG 448



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 53/187 (28%), Positives = 88/187 (47%), Gaps = 16/187 (8%)

Query: 28  AVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWA 87
            V S+G  + G LG  T    V G    P +V  + ++V+S+SAG+ HSLA+  +G+VW+
Sbjct: 773 TVFSWGHNANGQLGDNT----VSG-KLTPIQVLNI-NNVSSISAGYAHSLALKTDGSVWS 826

Query: 88  WGRNNEVQLGRGA-LESRATWNDPKRVEGLDQVNVCAAFASGVVSSAI-GDDGSLWVWGK 145
           WG N   QLG G  +++       K   G   ++  +  A+G     +   D + + WG 
Sbjct: 827 WGWNGNGQLGEGTNIDNSLLPLQVKNSTGTGFLSDISKIATGSNHCLVMKSDNTAFAWGL 886

Query: 146 SKRGQLGLGKDITEAIVPSRV------EALAGEKIVKVSFGWGHALAQTEDGKLFGWGYS 199
           +  GQLG    I    +P +V          G   V+  F     + ++ D  ++ WG +
Sbjct: 887 NGNGQLG-NNSIVNKNLPVQVLNSNGSSGFTGVSFVEAGFA-NSTIIKSSDSLVWNWGIN 944

Query: 200 ADGRIGN 206
           + G +GN
Sbjct: 945 SYGELGN 951


>gi|126330876|ref|XP_001375975.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC6 [Monodelphis
           domestica]
          Length = 1016

 Score =  101 bits (252), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 72/248 (29%), Positives = 120/248 (48%), Gaps = 45/248 (18%)

Query: 56  PTRVPGLPS-DVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVE 114
           P ++  L + D+ SVS G  HSLA+   G V++WG  ++ QLG    E +   + PK+++
Sbjct: 80  PAQIQALETQDIVSVSCGKEHSLAICKEGRVFSWGSGSDGQLG--IREFKKLSSIPKKID 137

Query: 115 GLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKI 174
            L    +         S A+  DG ++ WGK+  GQLGLG+++     P  V++L G  +
Sbjct: 138 ELSSFKIIQVSCGHYHSIALAQDGRVFSWGKNNHGQLGLGENVPSQASPQWVKSLDGIPL 197

Query: 175 VKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSST 234
            +V+ G  H+ A +  G  +GWG +  G++   GK               ES ++IS   
Sbjct: 198 AQVAAGGAHSFALSFSGTSYGWGRNNAGQLALSGK--------------KESAEQIS--- 240

Query: 235 IEKAQKLVSEGMEKEKYMPIIWEPFLV---EGVEVVDIACGFDHSLVLGRNGVLLSCGSN 291
                                 +PF +   + ++V  I+CG +H+ VL ++G + + GSN
Sbjct: 241 ----------------------KPFSIGELKRLQVTYISCGDEHTAVLTQDGKVFTFGSN 278

Query: 292 VYGQLGRE 299
             GQLGR+
Sbjct: 279 DSGQLGRQ 286



 Score = 49.3 bits (116), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 35/93 (37%), Positives = 46/93 (49%), Gaps = 13/93 (13%)

Query: 266 VVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFHP----VSISSGL 321
           ++  ACG  HSL+L  +G + SCG+N  GQLGR++      P  I        VS+S G 
Sbjct: 39  LLQAACGERHSLLLLSDGTVWSCGNNSCGQLGRKRCQKHGRPAQIQALETQDIVSVSCGK 98

Query: 322 GHSLAICEVRSSNVTGGARGIVSWGWNRSSQLG 354
            HSLAIC+            + SWG     QLG
Sbjct: 99  EHSLAICK---------EGRVFSWGSGSDGQLG 122


>gi|170578406|ref|XP_001894395.1| hypothetical protein [Brugia malayi]
 gi|158599034|gb|EDP36761.1| conserved hypothetical protein [Brugia malayi]
          Length = 988

 Score =  101 bits (252), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 98/356 (27%), Positives = 158/356 (44%), Gaps = 32/356 (8%)

Query: 32  FGDGSQGALGL-PTSLTGVGGDAYEPTRVPGLPSD-----VTSVSAGHYHSLAVTNNGAV 85
           FG    G LG  P S+         P  V G P+      V S+++G  H+L ++++G V
Sbjct: 9   FGCAGDGQLGFRPDSVESDAQMMIVPRLVYGAPTRQNGVIVKSIASGERHTLFLSDDGKV 68

Query: 86  WAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGK 145
           W+ G N   +LGRG +   +    P  +     V++    A    S A+ DDG L+ WG 
Sbjct: 69  WSCGSNYNGELGRGGVREGSYTIYPVHISS--TVSIIQISAGRSHSMAVSDDGRLFAWGS 126

Query: 146 SKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIG 205
           +  GQL +  DI  +  P RV +L   + V+V+ G  H ++    G++F WG  +DGRI 
Sbjct: 127 NSHGQLAMSGDILASDTPKRVPSLP--ETVQVACGASHTVSLNGGGRVFIWGQQSDGRIR 184

Query: 206 NLGKALE---SSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVE 262
           +    +E   S P+   I   +     +++S    A     EG   +     +  P  V 
Sbjct: 185 HSPAEVEIFISIPI-VQISAGNLFTMALTASGTLFAWGKNEEGQLGDFTNKDVVNPCAVP 243

Query: 263 GVE-VVDIACGFDHSLVLGRNGVLLSCGSNVYGQLG-----REKQDMGMFPVDINFHPVS 316
            +  VV + CG  HS+ L   G + SCGS+ +GQLG     R +  M      +  H   
Sbjct: 244 NINSVVAVECGDSHSIALTHEGRVFSCGSDSFGQLGCGQPNRSQNCMRGITEMLGSHVTR 303

Query: 317 ISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPDN--VPLVVEGLEG 370
           I+ G  H++ +   +          + ++G N + QLG     N   P V++ +E 
Sbjct: 304 IACGRCHTIVVANGK----------MHTFGLNSNGQLGHGNTRNQITPRVIDSVEN 349


>gi|444918725|ref|ZP_21238787.1| BNR repeat domain protein [Cystobacter fuscus DSM 2262]
 gi|444709515|gb|ELW50526.1| BNR repeat domain protein [Cystobacter fuscus DSM 2262]
          Length = 394

 Score =  101 bits (252), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 79/257 (30%), Positives = 118/257 (45%), Gaps = 50/257 (19%)

Query: 56  PTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEG 115
           P  V GL S +T+++AG+ HSLA+  +G VWAWG N   QLG G  +   T   P +V+G
Sbjct: 187 PVLVEGL-SGITTIAAGNSHSLALDKSGVVWAWGDNTLGQLGNGTQDESTT---PVKVQG 242

Query: 116 LDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIV 175
           L  + + A  A G  S A+  +  +W WG +  GQLG G       +P  ++ L  + + 
Sbjct: 243 LPTIKLIA--AGGAHSLALDTENRVWTWGSNDEGQLGNGNKGGLRTLP--IQVLNLKDVK 298

Query: 176 KVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTI 235
           +++ G  H+LA T DG +  WG  + G++G+                    D  +     
Sbjct: 299 QLAAGIRHSLALTNDGNVMAWGSDSAGQLGD--------------------DLSL----- 333

Query: 236 EKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQ 295
                       KE+  P+           V+ I+ G  HSL L  NG L + GSN YGQ
Sbjct: 334 ------------KEQLSPVETSSL----TNVIAISAGHSHSLALLSNGALFAWGSNSYGQ 377

Query: 296 LGREKQDMGMFPVDINF 312
           LG     M + P+ + F
Sbjct: 378 LGGSTPTMPI-PLPVMF 393



 Score = 97.8 bits (242), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 93/312 (29%), Positives = 139/312 (44%), Gaps = 85/312 (27%)

Query: 66  VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAF 125
           V+ VS+   H+LA+  +G+VWAWGRN+  QLG   + +R+    P RV GL  V    + 
Sbjct: 61  VSQVSSRGQHTLALRTDGSVWAWGRNDAAQLGDETVVNRSA---PTRVAGLSGVQ---SV 114

Query: 126 ASGVVSS-AIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHA 184
           ASG   S A+G DGS+W WG +    +         + P+++  L+   I+ +S G  H+
Sbjct: 115 ASGYFQSLALGGDGSVWAWGLTNSSDI--------QMTPAKLPELS--DIIAISAGTFHS 164

Query: 185 LAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSE 244
           LA  + G ++ WG                      +D+SS++                  
Sbjct: 165 LALQQSGSVWFWG--------------------ELLDQSSDT------------------ 186

Query: 245 GMEKEKYMPIIWEPFLVEGVE-VVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDM 303
                        P LVEG+  +  IA G  HSL L ++GV+ + G N  GQLG   QD 
Sbjct: 187 -------------PVLVEGLSGITTIAAGNSHSLALDKSGVVWAWGDNTLGQLGNGTQDE 233

Query: 304 GMFPVDINFHPV--SISSGLGHSLAI-CEVRSSNVTGGARGIVSWGWNRSSQLG---RMG 357
              PV +   P    I++G  HSLA+  E R          + +WG N   QLG   + G
Sbjct: 234 STTPVKVQGLPTIKLIAAGGAHSLALDTENR----------VWTWGSNDEGQLGNGNKGG 283

Query: 358 PDNVPLVVEGLE 369
              +P+ V  L+
Sbjct: 284 LRTLPIQVLNLK 295



 Score = 46.2 bits (108), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 29/69 (42%), Positives = 42/69 (60%), Gaps = 5/69 (7%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAW 88
           V+++G  S G LG   SL     +   P     L ++V ++SAGH HSLA+ +NGA++AW
Sbjct: 316 VMAWGSDSAGQLGDDLSLK----EQLSPVETSSL-TNVIAISAGHSHSLALLSNGALFAW 370

Query: 89  GRNNEVQLG 97
           G N+  QLG
Sbjct: 371 GSNSYGQLG 379


>gi|315645418|ref|ZP_07898542.1| hypothetical protein PVOR_07930 [Paenibacillus vortex V453]
 gi|315278896|gb|EFU42206.1| hypothetical protein PVOR_07930 [Paenibacillus vortex V453]
          Length = 667

 Score =  101 bits (251), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 92/320 (28%), Positives = 156/320 (48%), Gaps = 46/320 (14%)

Query: 71  AGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVV 130
           AG+YH+ ++ ++G V+ WG+ +  Q+G  A  +R   N P +  GL+ V       +GV 
Sbjct: 41  AGYYHTASLVSSGDVYVWGQGDRGQIGDAAWNAR---NTPVQARGLNDV---MDIHTGVR 94

Query: 131 SS-AIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTE 189
           S+ A+  DG++W WG ++ GQLG+G    +  VP+ V  L+G K +    G+ H++A TE
Sbjct: 95  STMALRSDGTVWTWGSNENGQLGIGT-TADKNVPTPVSGLSGIKAISGGLGY-HSMALTE 152

Query: 190 DGKLFGWGYSADGRIGNLGKALESSPL-------------DSNIDRSSESDQEISSSTIE 236
           +G ++ WG + +G +GN     ++SP+                   + +SD  I +    
Sbjct: 153 NGTVWTWGKNDNGELGNGTTVQQNSPVLVIGLSDVTAIAAGGYYSLALKSDGTIWAWGAN 212

Query: 237 KAQKLVSEGMEKEKYMPIIWEPFLVEGV-EVVDIACGFDHSLVLGRNGVLLSCGSNVYGQ 295
              +L  +G   +K+ P+      V G+ +V+ I  G  HSL + ++G + + G N+YG 
Sbjct: 213 GNGEL-GDGTIVDKHTPV-----QVSGLSDVIAITAGGSHSLAIKQDGTVWAWGINMYGT 266

Query: 296 LGREKQDMGMFPVDINF--HPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQ- 352
           LG   +     PV +    H  +I+ G  HSLA+ +    NV         WGW  +S+ 
Sbjct: 267 LGDGTRTNRTIPVKVRNLQHIKAIAGGGHHSLALDQ--EGNV---------WGWGDNSRG 315

Query: 353 ---LGRMGPDNVPLVVEGLE 369
              LG       P  + G+E
Sbjct: 316 QLGLGHNSSRTTPEQLTGIE 335



 Score = 97.8 bits (242), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 95/308 (30%), Positives = 147/308 (47%), Gaps = 32/308 (10%)

Query: 2   RLLKSVVHNHVNVLTSRIFMRSASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPG 61
           R L  V+  H  V   R  M   S   V ++G    G LG+ T+      D   PT V G
Sbjct: 81  RGLNDVMDIHTGV---RSTMALRSDGTVWTWGSNENGQLGIGTT-----ADKNVPTPVSG 132

Query: 62  LPSDVTSVSAG-HYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVN 120
           L S + ++S G  YHS+A+T NG VW WG+N+  +LG G    +   N P  V GL  V 
Sbjct: 133 L-SGIKAISGGLGYHSMALTENGTVWTWGKNDNGELGNGTTVQQ---NSPVLVIGLSDVT 188

Query: 121 VCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFG 180
             A  A G  S A+  DG++W WG +  G+LG G  I +   P +V  L+   ++ ++ G
Sbjct: 189 AIA--AGGYYSLALKSDGTIWAWGANGNGELGDGT-IVDKHTPVQVSGLS--DVIAITAG 243

Query: 181 WGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEIS-----SSTI 235
             H+LA  +DG ++ WG +  G +G+  +   + P+     R+ +  + I+     S  +
Sbjct: 244 GSHSLAIKQDGTVWAWGINMYGTLGDGTRTNRTIPVKV---RNLQHIKAIAGGGHHSLAL 300

Query: 236 EKAQKL-----VSEGMEKEKYMPIIWEPFLVEGVE-VVDIACGFDHSLVLGRNGVLLSCG 289
           ++   +      S G     +      P  + G+E V+DIA G  HS  L ++G +   G
Sbjct: 301 DQEGNVWGWGDNSRGQLGLGHNSSRTTPEQLTGIEHVLDIAGGGFHSAALKKDGRVWGWG 360

Query: 290 SNVYGQLG 297
            N  GQ+G
Sbjct: 361 LNSSGQIG 368



 Score = 92.0 bits (227), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 57/164 (34%), Positives = 93/164 (56%), Gaps = 9/164 (5%)

Query: 52  DAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPK 111
           D + P +V GL SDV +++AG  HSLA+  +G VWAWG N    LG G   +R     P 
Sbjct: 224 DKHTPVQVSGL-SDVIAITAGGSHSLAIKQDGTVWAWGINMYGTLGDGTRTNRTI---PV 279

Query: 112 RVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAG 171
           +V  L  +   A    G  S A+  +G++W WG + RGQLGLG + +    P ++  +  
Sbjct: 280 KVRNLQHIKAIAG--GGHHSLALDQEGNVWGWGDNSRGQLGLGHN-SSRTTPEQLTGI-- 334

Query: 172 EKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSP 215
           E ++ ++ G  H+ A  +DG+++GWG ++ G+IG+  +   ++P
Sbjct: 335 EHVLDIAGGGFHSAALKKDGRVWGWGLNSSGQIGDGTRNDRNAP 378



 Score = 40.4 bits (93), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 25/73 (34%), Positives = 37/73 (50%), Gaps = 6/73 (8%)

Query: 32  FGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRN 91
           +GD S+G LGL     G       P ++ G+   V  ++ G +HS A+  +G VW WG N
Sbjct: 309 WGDNSRGQLGL-----GHNSSRTTPEQLTGI-EHVLDIAGGGFHSAALKKDGRVWGWGLN 362

Query: 92  NEVQLGRGALESR 104
           +  Q+G G    R
Sbjct: 363 SSGQIGDGTRNDR 375


>gi|149730315|ref|XP_001489590.1| PREDICTED: RCC1 and BTB domain-containing protein 2 [Equus
           caballus]
          Length = 551

 Score =  101 bits (251), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 63/176 (35%), Positives = 95/176 (53%), Gaps = 5/176 (2%)

Query: 66  VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAF 125
           V  V+ G YHSL +T++G V+AWG NN  Q+G G   S A    P+RV G  Q  V    
Sbjct: 154 VIEVACGSYHSLVLTSDGEVFAWGYNNSGQVGSG---STANQPIPRRVTGCLQNKVVVNI 210

Query: 126 ASG-VVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHA 184
           A G + S A+ D G ++VWG S  GQLGLG    +   P RV AL G ++ + + G+ H 
Sbjct: 211 ACGQMCSMAVVDTGEVYVWGYSGNGQLGLGGSGNQP-TPCRVAALQGIRVQRAACGYAHT 269

Query: 185 LAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQK 240
           L  T++G+++ WG ++ G++G   K+ +  P    +++    +     ST   A K
Sbjct: 270 LVLTDEGQVYVWGANSYGQLGTGNKSNQPYPTPIIVEKDRIIEIAACHSTHTSAAK 325



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 66/249 (26%), Positives = 114/249 (45%), Gaps = 19/249 (7%)

Query: 77  LAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNV-CAAFASGVVSSAIG 135
           L  T N  ++  G N    LG G ++S     +P+R++ L    V C ++ SG       
Sbjct: 59  LYTTVNDEIFVLGTNCCGCLGLGDVQSTI---EPRRLDSLTGKKVACLSYGSGPHVVLAT 115

Query: 136 DDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEA-LAGEKIVKVSFGWGHALAQTEDGKLF 194
            +G ++ WG +   QLG G      +VP  +   L+ +++++V+ G  H+L  T DG++F
Sbjct: 116 SEGEVFTWGHNAYSQLGNGT-TNHGLVPCHISTNLSNKRVIEVACGSYHSLVLTSDGEVF 174

Query: 195 GWGYSADGRIGNLGKALESSP------LDSNIDRSSESDQEISSSTIEKAQKLV------ 242
            WGY+  G++G+   A +  P      L + +  +    Q  S + ++  +  V      
Sbjct: 175 AWGYNNSGQVGSGSTANQPIPRRVTGCLQNKVVVNIACGQMCSMAVVDTGEVYVWGYSGN 234

Query: 243 -SEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQ 301
              G+      P       ++G+ V   ACG+ H+LVL   G +   G+N YGQLG   +
Sbjct: 235 GQLGLGGSGNQPTPCRVAALQGIRVQRAACGYAHTLVLTDEGQVYVWGANSYGQLGTGNK 294

Query: 302 DMGMFPVDI 310
               +P  I
Sbjct: 295 SNQPYPTPI 303



 Score = 61.2 bits (147), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 69/270 (25%), Positives = 114/270 (42%), Gaps = 66/270 (24%)

Query: 114 EGLDQVNVCAAFASG---VVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALA 170
           E L  +     F S    V+ + + D+  ++V G +  G LGLG D+   I P R+++L 
Sbjct: 40  EELQLIRQACVFGSAGNEVLYTTVNDE--IFVLGTNCCGCLGLG-DVQSTIEPRRLDSLT 96

Query: 171 GEKIVKVSFGWG-HALAQTEDGKLFGWGYSADGRIGN--LGKALESSPLDSNIDRSSESD 227
           G+K+  +S+G G H +  T +G++F WG++A  ++GN      L    + +N+       
Sbjct: 97  GKKVACLSYGSGPHVVLATSEGEVFTWGHNAYSQLGNGTTNHGLVPCHISTNLSNK---- 152

Query: 228 QEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLS 287
                                                 V+++ACG  HSLVL  +G + +
Sbjct: 153 -------------------------------------RVIEVACGSYHSLVLTSDGEVFA 175

Query: 288 CGSNVYGQLGREKQDMGMFPVDI-----NFHPVSISSGLGHSLAICEVRSSNVTGGARGI 342
            G N  GQ+G         P  +     N   V+I+ G   S+A+ +      TG    +
Sbjct: 176 WGYNNSGQVGSGSTANQPIPRRVTGCLQNKVVVNIACGQMCSMAVVD------TGE---V 226

Query: 343 VSWGWNRSSQLGRMGPDN--VPLVVEGLEG 370
             WG++ + QLG  G  N   P  V  L+G
Sbjct: 227 YVWGYSGNGQLGLGGSGNQPTPCRVAALQG 256


>gi|326914164|ref|XP_003203397.1| PREDICTED: RCC1 and BTB domain-containing protein 2-like [Meleagris
           gallopavo]
          Length = 567

 Score =  101 bits (251), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 60/188 (31%), Positives = 100/188 (53%), Gaps = 9/188 (4%)

Query: 66  VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAF 125
           V  V+ G +HS+ +T++G V+ WG NN  Q+G G   S A    P+RV    Q  V    
Sbjct: 171 VIEVACGSHHSMVLTSDGEVYTWGYNNSGQVGSG---STANQPIPRRVTSCLQNKVVVNI 227

Query: 126 ASG-VVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHA 184
           A G + S A+ ++G ++VWG +  GQLGLG    +   P R+ AL G ++ +V+ G  H 
Sbjct: 228 ACGQMCSMAVVENGEVYVWGYNGNGQLGLGSSGNQP-TPCRIAALQGIRVQRVACGCAHT 286

Query: 185 LAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSE 244
           L  T++G+++ WG ++ G++G   K+ +S P    +D+    D+ I  +    A    ++
Sbjct: 287 LVLTDEGQIYAWGANSYGQLGTGNKSNQSYPTTVTVDK----DRVIEIAACHSAHTSAAK 342

Query: 245 GMEKEKYM 252
               + YM
Sbjct: 343 TQSGQVYM 350



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 68/249 (27%), Positives = 117/249 (46%), Gaps = 19/249 (7%)

Query: 77  LAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNV-CAAFASGVVSSAIG 135
           L VT N  V+  G N    LG G ++S     +PKR++ L    + C ++ SG       
Sbjct: 76  LYVTENDEVFVLGMNCSGCLGTGDVQSTI---EPKRLDSLCGKKIACLSYGSGPHVVLAT 132

Query: 136 DDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEA-LAGEKIVKVSFGWGHALAQTEDGKLF 194
           ++G ++ WG +   QLG G      +VP +V   L  +K+++V+ G  H++  T DG+++
Sbjct: 133 EEGEVYTWGHNAYSQLGNGT-TNHGLVPCQVSTNLVNKKVIEVACGSHHSMVLTSDGEVY 191

Query: 195 GWGYSADGRIGNLGKALESSP------LDSNIDRSSESDQEISSSTIEKAQKLV------ 242
            WGY+  G++G+   A +  P      L + +  +    Q  S + +E  +  V      
Sbjct: 192 TWGYNNSGQVGSGSTANQPIPRRVTSCLQNKVVVNIACGQMCSMAVVENGEVYVWGYNGN 251

Query: 243 -SEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQ 301
              G+      P       ++G+ V  +ACG  H+LVL   G + + G+N YGQLG   +
Sbjct: 252 GQLGLGSSGNQPTPCRIAALQGIRVQRVACGCAHTLVLTDEGQIYAWGANSYGQLGTGNK 311

Query: 302 DMGMFPVDI 310
               +P  +
Sbjct: 312 SNQSYPTTV 320



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 62/245 (25%), Positives = 108/245 (44%), Gaps = 57/245 (23%)

Query: 134 IGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWG-HALAQTEDGK 192
           + ++  ++V G +  G LG G D+   I P R+++L G+KI  +S+G G H +  TE+G+
Sbjct: 78  VTENDEVFVLGMNCSGCLGTG-DVQSTIEPKRLDSLCGKKIACLSYGSGPHVVLATEEGE 136

Query: 193 LFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYM 252
           ++ WG++A  ++GN        P             ++S++ + K               
Sbjct: 137 VYTWGHNAYSQLGNGTTNHGLVPC------------QVSTNLVNK--------------- 169

Query: 253 PIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDI-- 310
                       +V+++ACG  HS+VL  +G + + G N  GQ+G         P  +  
Sbjct: 170 ------------KVIEVACGSHHSMVLTSDGEVYTWGYNNSGQVGSGSTANQPIPRRVTS 217

Query: 311 ---NFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQ--LGRMGPDNVPLVV 365
              N   V+I+ G   S+A+       V  G   +  WG+N + Q  LG  G    P  +
Sbjct: 218 CLQNKVVVNIACGQMCSMAV-------VENGE--VYVWGYNGNGQLGLGSSGNQPTPCRI 268

Query: 366 EGLEG 370
             L+G
Sbjct: 269 AALQG 273



 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 41/124 (33%), Positives = 61/124 (49%), Gaps = 11/124 (8%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPS-DVTSVSAGHYHSLAVTNNGAVWA 87
           V  +G    G LGL     G  G+   P R+  L    V  V+ G  H+L +T+ G ++A
Sbjct: 243 VYVWGYNGNGQLGL-----GSSGNQPTPCRIAALQGIRVQRVACGCAHTLVLTDEGQIYA 297

Query: 88  WGRNNEVQLGRGALESRATWNDPKRVE-GLDQVNVCAAFASGVVSSAIGDDGSLWVWGKS 146
           WG N+  QLG G   +++  + P  V    D+V   AA  S   S+A    G +++WG+ 
Sbjct: 298 WGANSYGQLGTG---NKSNQSYPTTVTVDKDRVIEIAACHSAHTSAAKTQSGQVYMWGQC 354

Query: 147 KRGQ 150
            RGQ
Sbjct: 355 -RGQ 357


>gi|449484061|ref|XP_002195626.2| PREDICTED: RCC1 and BTB domain-containing protein 2 [Taeniopygia
           guttata]
          Length = 526

 Score =  101 bits (251), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 66/227 (29%), Positives = 114/227 (50%), Gaps = 16/227 (7%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPG--LPSDVTSVSAGHYHSLAVTNNGAVW 86
           V ++G  +   LG      G     + P +V    +   V  V+ G +HS+ +T++G V+
Sbjct: 96  VYTWGHNAYSQLG-----NGTTNHGFVPCQVSTNLVNKKVIEVACGSHHSMVLTSDGEVY 150

Query: 87  AWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASG-VVSSAIGDDGSLWVWGK 145
            WG NN  Q+G G   S A    P+RV    Q  +    A G + S A+ ++G ++VWG 
Sbjct: 151 TWGYNNSGQVGSG---STANQPIPRRVTSCLQNKIVVNIACGQMCSMAVVENGEVYVWGY 207

Query: 146 SKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIG 205
           +  GQLGLG    +   P R+ AL G ++ +V+ G+ H L  T++G+++ WG ++ G++G
Sbjct: 208 NGNGQLGLGSSGNQP-TPCRIAALQGIRVQRVACGYAHTLVLTDEGQIYAWGANSYGQLG 266

Query: 206 NLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYM 252
              K+ +S P    +D+    D+ I  +    A    ++    + YM
Sbjct: 267 TGNKSNQSYPTTVVVDK----DRVIEIAACHSAHTSAAKTQSGQVYM 309



 Score = 90.9 bits (224), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 67/249 (26%), Positives = 116/249 (46%), Gaps = 19/249 (7%)

Query: 77  LAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNV-CAAFASGVVSSAIG 135
           L  T N  V+  G N    LG G ++S     +P+R++ L    + C ++ SG       
Sbjct: 35  LYATENDEVFVLGMNCSGCLGTGDMQSTI---EPRRLDSLCGKKIACLSYGSGPHVVLAT 91

Query: 136 DDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEA-LAGEKIVKVSFGWGHALAQTEDGKLF 194
           ++G ++ WG +   QLG G       VP +V   L  +K+++V+ G  H++  T DG+++
Sbjct: 92  EEGEVYTWGHNAYSQLGNGT-TNHGFVPCQVSTNLVNKKVIEVACGSHHSMVLTSDGEVY 150

Query: 195 GWGYSADGRIGNLGKALESSP------LDSNIDRSSESDQEISSSTIEKAQKLV------ 242
            WGY+  G++G+   A +  P      L + I  +    Q  S + +E  +  V      
Sbjct: 151 TWGYNNSGQVGSGSTANQPIPRRVTSCLQNKIVVNIACGQMCSMAVVENGEVYVWGYNGN 210

Query: 243 -SEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQ 301
              G+      P       ++G+ V  +ACG+ H+LVL   G + + G+N YGQLG   +
Sbjct: 211 GQLGLGSSGNQPTPCRIAALQGIRVQRVACGYAHTLVLTDEGQIYAWGANSYGQLGTGNK 270

Query: 302 DMGMFPVDI 310
               +P  +
Sbjct: 271 SNQSYPTTV 279



 Score = 64.3 bits (155), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 68/269 (25%), Positives = 117/269 (43%), Gaps = 59/269 (21%)

Query: 110 PKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEAL 169
           P+ ++ + Q  V  +  + V+ +   D+  ++V G +  G LG G D+   I P R+++L
Sbjct: 15  PEEIKLIRQACVFGSAGNEVLYATENDE--VFVLGMNCSGCLGTG-DMQSTIEPRRLDSL 71

Query: 170 AGEKIVKVSFGWG-HALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQ 228
            G+KI  +S+G G H +  TE+G+++ WG++A  ++GN                      
Sbjct: 72  CGKKIACLSYGSGPHVVLATEEGEVYTWGHNAYSQLGN---------------------- 109

Query: 229 EISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSC 288
                           G     ++P      LV   +V+++ACG  HS+VL  +G + + 
Sbjct: 110 ----------------GTTNHGFVPCQVSTNLVNK-KVIEVACGSHHSMVLTSDGEVYTW 152

Query: 289 GSNVYGQLGREKQDMGMFPVDI-----NFHPVSISSGLGHSLAICEVRSSNVTGGARGIV 343
           G N  GQ+G         P  +     N   V+I+ G   S+A+       V  G   + 
Sbjct: 153 GYNNSGQVGSGSTANQPIPRRVTSCLQNKIVVNIACGQMCSMAV-------VENGE--VY 203

Query: 344 SWGWNRSSQ--LGRMGPDNVPLVVEGLEG 370
            WG+N + Q  LG  G    P  +  L+G
Sbjct: 204 VWGYNGNGQLGLGSSGNQPTPCRIAALQG 232



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 41/124 (33%), Positives = 62/124 (50%), Gaps = 11/124 (8%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPS-DVTSVSAGHYHSLAVTNNGAVWA 87
           V  +G    G LGL     G  G+   P R+  L    V  V+ G+ H+L +T+ G ++A
Sbjct: 202 VYVWGYNGNGQLGL-----GSSGNQPTPCRIAALQGIRVQRVACGYAHTLVLTDEGQIYA 256

Query: 88  WGRNNEVQLGRGALESRATWNDPKRVE-GLDQVNVCAAFASGVVSSAIGDDGSLWVWGKS 146
           WG N+  QLG G   +++  + P  V    D+V   AA  S   S+A    G +++WG+ 
Sbjct: 257 WGANSYGQLGTG---NKSNQSYPTTVVVDKDRVIEIAACHSAHTSAAKTQSGQVYMWGQC 313

Query: 147 KRGQ 150
            RGQ
Sbjct: 314 -RGQ 316


>gi|47226892|emb|CAG05784.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 557

 Score =  101 bits (251), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 62/180 (34%), Positives = 101/180 (56%), Gaps = 5/180 (2%)

Query: 62  LPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNV 121
           L   VT V+ G +HS+A+T++G V+AWG NN  Q+G G+  ++ T   P+RV    Q  V
Sbjct: 141 LNKKVTEVACGSHHSMALTDSGEVYAWGYNNCGQVGSGSTANQPT---PRRVSSCLQNRV 197

Query: 122 CAAFASGVVSS-AIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFG 180
             +   G  SS A+ D+G ++ WG +  GQLGLG +  + + P R+ AL G  + ++  G
Sbjct: 198 AVSIVCGQTSSLAVVDNGEVYGWGYNGNGQLGLGNNGNQ-LTPCRLVALQGLCVQQIVSG 256

Query: 181 WGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQK 240
           + H+LA T++G L+ WG +  G++G   K+ + SP+    ++    +     ST   A K
Sbjct: 257 YAHSLALTDEGLLYAWGANTYGQLGTGNKSNQLSPVQIMTEKERIVEIAACHSTHTSAAK 316



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 69/252 (27%), Positives = 118/252 (46%), Gaps = 23/252 (9%)

Query: 76  SLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCA-AFASGVVSSAI 134
           ++ +T +  V+A G N    LG G  +S      PK+V+ L    V + ++ SG      
Sbjct: 49  AIYITADDEVYALGLNCSNCLGTGDSQSSIV---PKKVDILSGRKVVSLSYGSGPHILLA 105

Query: 135 GDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEA-LAGEKIVKVSFGWGHALAQTEDGKL 193
            +DG L+ WG +   QLG G    + + P  V A L  +K+ +V+ G  H++A T+ G++
Sbjct: 106 TEDGELFAWGHNGYSQLGNGT-TNQGVAPVLVSANLLNKKVTEVACGSHHSMALTDSGEV 164

Query: 194 FGWGYSADGRIGNLGKALESSP------LDSNIDRSSESDQEISSSTIEKAQKL------ 241
           + WGY+  G++G+   A + +P      L + +  S    Q  S + ++  +        
Sbjct: 165 YAWGYNNCGQVGSGSTANQPTPRRVSSCLQNRVAVSIVCGQTSSLAVVDNGEVYGWGYNG 224

Query: 242 ---VSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGR 298
              +  G    +  P       ++G+ V  I  G+ HSL L   G+L + G+N YGQLG 
Sbjct: 225 NGQLGLGNNGNQLTPC--RLVALQGLCVQQIVSGYAHSLALTDEGLLYAWGANTYGQLGT 282

Query: 299 EKQDMGMFPVDI 310
             +   + PV I
Sbjct: 283 GNKSNQLSPVQI 294



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 71/245 (28%), Positives = 105/245 (42%), Gaps = 57/245 (23%)

Query: 134 IGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWG-HALAQTEDGK 192
           I  D  ++  G +    LG G D   +IVP +V+ L+G K+V +S+G G H L  TEDG+
Sbjct: 52  ITADDEVYALGLNCSNCLGTG-DSQSSIVPKKVDILSGRKVVSLSYGSGPHILLATEDGE 110

Query: 193 LFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYM 252
           LF WG++   ++GN                   ++Q +       A  LVS  +  +K  
Sbjct: 111 LFAWGHNGYSQLGN-----------------GTTNQGV-------APVLVSANLLNKK-- 144

Query: 253 PIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDI-- 310
                        V ++ACG  HS+ L  +G + + G N  GQ+G         P  +  
Sbjct: 145 -------------VTEVACGSHHSMALTDSGEVYAWGYNNCGQVGSGSTANQPTPRRVSS 191

Query: 311 ---NFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQ--LGRMGPDNVPLVV 365
              N   VSI  G   SLA+  V +  V G       WG+N + Q  LG  G    P  +
Sbjct: 192 CLQNRVAVSIVCGQTSSLAV--VDNGEVYG-------WGYNGNGQLGLGNNGNQLTPCRL 242

Query: 366 EGLEG 370
             L+G
Sbjct: 243 VALQG 247


>gi|449280347|gb|EMC87674.1| RCC1 and BTB domain-containing protein 2, partial [Columba livia]
          Length = 531

 Score =  101 bits (251), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 66/227 (29%), Positives = 114/227 (50%), Gaps = 16/227 (7%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPG--LPSDVTSVSAGHYHSLAVTNNGAVW 86
           V ++G  +   LG      G     + P +V    +   V  V+ G +HS+ +T++G V+
Sbjct: 101 VYTWGHNAYSQLG-----NGTTNHGFVPCQVSTNLVNKKVIEVACGSHHSMVLTSDGEVY 155

Query: 87  AWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASG-VVSSAIGDDGSLWVWGK 145
            WG NN  Q+G G   S A    P+RV    Q  +    A G + S A+ ++G ++VWG 
Sbjct: 156 TWGYNNSGQVGSG---STANQPIPRRVTSCLQNKIVVNIACGQMCSMAVVENGEVYVWGY 212

Query: 146 SKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIG 205
           +  GQLGLG    +   P R+ AL G ++ +V+ G+ H L  T++G+++ WG ++ G++G
Sbjct: 213 NGNGQLGLGSSGNQP-TPCRIAALQGIRVQRVACGYAHTLVLTDEGQIYAWGANSYGQLG 271

Query: 206 NLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYM 252
              K+ +S P    +D+    D+ I  +    A    ++    + YM
Sbjct: 272 TGNKSNQSYPTTVVVDK----DRVIEIAACHSAHTSAAKTQSGQVYM 314



 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 67/249 (26%), Positives = 116/249 (46%), Gaps = 19/249 (7%)

Query: 77  LAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNV-CAAFASGVVSSAIG 135
           L  T N  V+  G N    LG G ++S     +P+R++ L    + C ++ SG       
Sbjct: 40  LYATENDEVFVLGMNCSGCLGTGDMQSTI---EPRRLDSLCGKKIACLSYGSGPHVVLAT 96

Query: 136 DDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEA-LAGEKIVKVSFGWGHALAQTEDGKLF 194
           ++G ++ WG +   QLG G       VP +V   L  +K+++V+ G  H++  T DG+++
Sbjct: 97  EEGEVYTWGHNAYSQLGNGT-TNHGFVPCQVSTNLVNKKVIEVACGSHHSMVLTSDGEVY 155

Query: 195 GWGYSADGRIGNLGKALESSP------LDSNIDRSSESDQEISSSTIEKAQKLV------ 242
            WGY+  G++G+   A +  P      L + I  +    Q  S + +E  +  V      
Sbjct: 156 TWGYNNSGQVGSGSTANQPIPRRVTSCLQNKIVVNIACGQMCSMAVVENGEVYVWGYNGN 215

Query: 243 -SEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQ 301
              G+      P       ++G+ V  +ACG+ H+LVL   G + + G+N YGQLG   +
Sbjct: 216 GQLGLGSSGNQPTPCRIAALQGIRVQRVACGYAHTLVLTDEGQIYAWGANSYGQLGTGNK 275

Query: 302 DMGMFPVDI 310
               +P  +
Sbjct: 276 SNQSYPTTV 284



 Score = 62.8 bits (151), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 63/243 (25%), Positives = 105/243 (43%), Gaps = 57/243 (23%)

Query: 136 DDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWG-HALAQTEDGKLF 194
           ++  ++V G +  G LG G D+   I P R+++L G+KI  +S+G G H +  TE+G+++
Sbjct: 44  ENDEVFVLGMNCSGCLGTG-DMQSTIEPRRLDSLCGKKIACLSYGSGPHVVLATEEGEVY 102

Query: 195 GWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPI 254
            WG++A  ++GN                                      G     ++P 
Sbjct: 103 TWGHNAYSQLGN--------------------------------------GTTNHGFVPC 124

Query: 255 IWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDI---- 310
                LV   +V+++ACG  HS+VL  +G + + G N  GQ+G         P  +    
Sbjct: 125 QVSTNLVNK-KVIEVACGSHHSMVLTSDGEVYTWGYNNSGQVGSGSTANQPIPRRVTSCL 183

Query: 311 -NFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQ--LGRMGPDNVPLVVEG 367
            N   V+I+ G   S+A+       V  G   +  WG+N + Q  LG  G    P  +  
Sbjct: 184 QNKIVVNIACGQMCSMAV-------VENGE--VYVWGYNGNGQLGLGSSGNQPTPCRIAA 234

Query: 368 LEG 370
           L+G
Sbjct: 235 LQG 237



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 41/124 (33%), Positives = 62/124 (50%), Gaps = 11/124 (8%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPS-DVTSVSAGHYHSLAVTNNGAVWA 87
           V  +G    G LGL     G  G+   P R+  L    V  V+ G+ H+L +T+ G ++A
Sbjct: 207 VYVWGYNGNGQLGL-----GSSGNQPTPCRIAALQGIRVQRVACGYAHTLVLTDEGQIYA 261

Query: 88  WGRNNEVQLGRGALESRATWNDPKRVE-GLDQVNVCAAFASGVVSSAIGDDGSLWVWGKS 146
           WG N+  QLG G   +++  + P  V    D+V   AA  S   S+A    G +++WG+ 
Sbjct: 262 WGANSYGQLGTG---NKSNQSYPTTVVVDKDRVIEIAACHSAHTSAAKTQSGQVYMWGQC 318

Query: 147 KRGQ 150
            RGQ
Sbjct: 319 -RGQ 321


>gi|410896622|ref|XP_003961798.1| PREDICTED: RCC1 and BTB domain-containing protein 1-like [Takifugu
           rubripes]
          Length = 531

 Score =  101 bits (251), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 64/183 (34%), Positives = 102/183 (55%), Gaps = 5/183 (2%)

Query: 62  LPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNV 121
           L   VT V+ G +HS+A+T++G V+AWG NN  Q+G G+  ++ T   P+RV    Q  V
Sbjct: 126 LNRKVTEVACGSHHSMALTDSGEVYAWGYNNCGQVGSGSTANQPT---PRRVSSCLQNRV 182

Query: 122 CAAFASGVVSS-AIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFG 180
             +   G  SS A+ D+G ++ WG +  GQLGLG +  + + P R+ AL G  + +V  G
Sbjct: 183 AVSIVCGQTSSLAVVDNGEVYGWGYNGNGQLGLGNNGNQ-LTPCRLVALQGLCVQQVVSG 241

Query: 181 WGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQK 240
           + H+LA T++G L+ WG +  G++G   K+ + SP+    ++    +     ST   A K
Sbjct: 242 YAHSLALTDEGLLYAWGANTYGQLGTGNKSNQLSPVQIMTEKERIVEIAACHSTHTSAAK 301

Query: 241 LVS 243
             S
Sbjct: 302 TQS 304



 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 69/252 (27%), Positives = 121/252 (48%), Gaps = 23/252 (9%)

Query: 76  SLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCA-AFASGVVSSAI 134
           ++ +T++  V+A+G N    LG G  +S+ T   PK+V+ L    V + ++ SG      
Sbjct: 34  AIYITSDDEVYAFGLNCSNCLGTG--DSQCTIV-PKKVDILSGRKVVSLSYGSGPHILLA 90

Query: 135 GDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEA-LAGEKIVKVSFGWGHALAQTEDGKL 193
            +DG L+ WG +   QLG G    + + P  V A L   K+ +V+ G  H++A T+ G++
Sbjct: 91  TEDGELFAWGHNGYSQLGNGT-TNQGVAPVLVSATLLNRKVTEVACGSHHSMALTDSGEV 149

Query: 194 FGWGYSADGRIGNLGKALESSP------LDSNIDRSSESDQEISSSTIEKAQKL------ 241
           + WGY+  G++G+   A + +P      L + +  S    Q  S + ++  +        
Sbjct: 150 YAWGYNNCGQVGSGSTANQPTPRRVSSCLQNRVAVSIVCGQTSSLAVVDNGEVYGWGYNG 209

Query: 242 ---VSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGR 298
              +  G    +  P       ++G+ V  +  G+ HSL L   G+L + G+N YGQLG 
Sbjct: 210 NGQLGLGNNGNQLTPC--RLVALQGLCVQQVVSGYAHSLALTDEGLLYAWGANTYGQLGT 267

Query: 299 EKQDMGMFPVDI 310
             +   + PV I
Sbjct: 268 GNKSNQLSPVQI 279



 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 68/245 (27%), Positives = 102/245 (41%), Gaps = 57/245 (23%)

Query: 134 IGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWG-HALAQTEDGK 192
           I  D  ++ +G +    LG G D    IVP +V+ L+G K+V +S+G G H L  TEDG+
Sbjct: 37  ITSDDEVYAFGLNCSNCLGTG-DSQCTIVPKKVDILSGRKVVSLSYGSGPHILLATEDGE 95

Query: 193 LFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYM 252
           LF WG++   ++GN                                      G   +   
Sbjct: 96  LFAWGHNGYSQLGN--------------------------------------GTTNQGVA 117

Query: 253 PIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDI-- 310
           P++    L+   +V ++ACG  HS+ L  +G + + G N  GQ+G         P  +  
Sbjct: 118 PVLVSATLLNR-KVTEVACGSHHSMALTDSGEVYAWGYNNCGQVGSGSTANQPTPRRVSS 176

Query: 311 ---NFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQ--LGRMGPDNVPLVV 365
              N   VSI  G   SLA+  V +  V G       WG+N + Q  LG  G    P  +
Sbjct: 177 CLQNRVAVSIVCGQTSSLAV--VDNGEVYG-------WGYNGNGQLGLGNNGNQLTPCRL 227

Query: 366 EGLEG 370
             L+G
Sbjct: 228 VALQG 232


>gi|410910330|ref|XP_003968643.1| PREDICTED: RCC1 and BTB domain-containing protein 2-like [Takifugu
           rubripes]
          Length = 527

 Score =  101 bits (251), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 58/179 (32%), Positives = 99/179 (55%), Gaps = 5/179 (2%)

Query: 66  VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAF 125
           V  V+ G +H++A+T +G V+AWG NN  Q+G G+  ++ T   P+RV    Q  V    
Sbjct: 130 VIEVACGSHHTIALTTDGEVFAWGYNNSGQVGSGSTANQPT---PRRVSSCLQNKVVVNI 186

Query: 126 ASG-VVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHA 184
           A G + S A+ D G ++ WG +  GQLGLG +  +   P R+ AL G  +++V+ G+ H 
Sbjct: 187 ACGQLCSMAVLDSGEIYGWGYNCNGQLGLGNNGNQQ-TPCRIAALQGVNVIQVACGYAHT 245

Query: 185 LAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVS 243
           +A T++G ++ WG ++ G++G   K  ++ P   N ++   S+     ++   A K  S
Sbjct: 246 IALTDEGFVYSWGANSYGQLGTGNKCNQAVPTLINTEKERMSEVAACHTSHTSAAKTQS 304



 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 82/326 (25%), Positives = 132/326 (40%), Gaps = 59/326 (18%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLP-SDVTSVSAGHYHSLAV-TNNGAVW 86
           V + G    G LGL     G      EP R+  L    + S+S G    +A+ T +G V+
Sbjct: 43  VFALGTNCSGCLGL-----GDLQSTIEPRRIDVLCGKKIVSLSYGTGPHVAIATADGEVF 97

Query: 87  AWGRNNEVQLGRGALESRATWNDPKRVE-GLDQVNVCAAFASGVVSSAIGDDGSLWVWGK 145
           +WG N   QLG G      T   P  V   L    V         + A+  DG ++ WG 
Sbjct: 98  SWGHNGYSQLGNGTSTHGLT---PALVSTNLLGKRVIEVACGSHHTIALTTDGEVFAWGY 154

Query: 146 SKRGQLGLGKDITEAIVPSRVE-ALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRI 204
           +  GQ+G G    +   P RV   L  + +V ++ G   ++A  + G+++GWGY+ +G++
Sbjct: 155 NNSGQVGSGSTANQP-TPRRVSSCLQNKVVVNIACGQLCSMAVLDSGEIYGWGYNCNGQL 213

Query: 205 GNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGV 264
           G      + +P              I++                            ++GV
Sbjct: 214 GLGNNGNQQTPC------------RIAA----------------------------LQGV 233

Query: 265 EVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFHPVSISSGLGHS 324
            V+ +ACG+ H++ L   G + S G+N YGQLG   +     P  IN     +S      
Sbjct: 234 NVIQVACGYAHTIALTDEGFVYSWGANSYGQLGTGNKCNQAVPTLINTEKERMS-----E 288

Query: 325 LAICEVRSSNVTGGARG-IVSWGWNR 349
           +A C    ++      G ++ WG  R
Sbjct: 289 VAACHTSHTSAAKTQSGQVLMWGQCR 314



 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 68/267 (25%), Positives = 112/267 (41%), Gaps = 55/267 (20%)

Query: 110 PKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEAL 169
           P+ ++ + Q  V  + A+  +   + D+  ++  G +  G LGLG D+   I P R++ L
Sbjct: 15  PEELKLIRQACVFGSAANEALYVTVNDE--VFALGTNCSGCLGLG-DLQSTIEPRRIDVL 71

Query: 170 AGEKIVKVSFGWG-HALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQ 228
            G+KIV +S+G G H    T DG++F WG++   ++GN                      
Sbjct: 72  CGKKIVSLSYGTGPHVAIATADGEVFSWGHNGYSQLGN---------------------- 109

Query: 229 EISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSC 288
              +ST      LVS  +                G  V+++ACG  H++ L  +G + + 
Sbjct: 110 --GTSTHGLTPALVSTNL---------------LGKRVIEVACGSHHTIALTTDGEVFAW 152

Query: 289 GSNVYGQLGREKQDMGMFPVDINFHPVSISSGLGHSLAI---CEVRSSNVTGGARGIVSW 345
           G N  GQ+G         P      P  +SS L + + +   C    S     +  I  W
Sbjct: 153 GYNNSGQVG--SGSTANQPT-----PRRVSSCLQNKVVVNIACGQLCSMAVLDSGEIYGW 205

Query: 346 GWNRSSQ--LGRMGPDNVPLVVEGLEG 370
           G+N + Q  LG  G    P  +  L+G
Sbjct: 206 GYNCNGQLGLGNNGNQQTPCRIAALQG 232


>gi|118397447|ref|XP_001031056.1| RCC1-like domain protein 3, HECT domain [Tetrahymena thermophila]
 gi|89285378|gb|EAR83393.1| RCC1-like domain protein 3, HECT domain [Tetrahymena thermophila
           SB210]
          Length = 1146

 Score =  101 bits (251), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 85/293 (29%), Positives = 134/293 (45%), Gaps = 53/293 (18%)

Query: 66  VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAF 125
           V  V+ G YH+LA+T+   V++WG     ++G+ +         P  ++ L++  V    
Sbjct: 634 VLQVACGDYHTLALTDTDQVYSWGGTLHKKVGQRS-------GKPAPIQQLNKKGVIQVD 686

Query: 126 ASGVVSSAIGDDGSLWVWGKS----KRGQLGLG--KDITEAIVPSRVEALAGEKIVKVSF 179
                S+AI  +G ++ WG       +GQLGLG  KDI     P +++   G+KIVKVS 
Sbjct: 687 CGDYHSAAITQNGDIYTWGGGGQDYNKGQLGLGHVKDIEN---PEKLKFFEGKKIVKVSC 743

Query: 180 GWGHALAQTEDGKLFGWGYSADGRIGNLGKAL-ESSPLDSNIDRSSESDQEISSSTIEKA 238
           G  H +A T + +LFGWG    G  G LG +  E +P+   ++ +  +            
Sbjct: 744 GQFHTMALTSENELFGWG---AGEFGELGTSKHEYTPIRVKVNFNQYN------------ 788

Query: 239 QKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLG- 297
                          I++E  L E   + +I CG  H+L+L  NG + S G    GQLG 
Sbjct: 789 ---------------ILYENILFEN-SIQNIKCGGHHTLLLTNNGYIYSSGYGRQGQLGL 832

Query: 298 REKQDMGMFPVDINFHP---VSISSGLGHSLAICEVRSSNVTG-GARGIVSWG 346
           R  ++   F +         + I++G  HSLA+ +       G GARG +  G
Sbjct: 833 RNSENQCEFQLVWTLTKKKIIKIAAGWNHSLALSDQNDIFACGHGARGQLGLG 885



 Score = 71.2 bits (173), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 76/330 (23%), Positives = 148/330 (44%), Gaps = 43/330 (13%)

Query: 63  PSDVTSVSAGHYHSLAVTNNGA-------VWAWGRNNEVQLGRGALESRATWNDPKRVEG 115
           P++++S+ + + +   V N G        ++AWG+N   +L  G  + +  +N P+  + 
Sbjct: 519 PNNISSMKSSNVN---VQNEGQGNSIKCYIFAWGKNESGELSFGN-QKQPFYNKPENPKN 574

Query: 116 LDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVP--SRVEALAGEK 173
           LD++ +     S   S+ I  +G L+V G +  G+LGL +++T A +     +    G K
Sbjct: 575 LDRIYIKQISTSQNHSACISANGELYVCGSALHGKLGL-EELTMANINKFQMIPIFKGIK 633

Query: 174 IVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDS-NIDRSSESD-QEIS 231
           +++V+ G  H LA T+  +++ WG +   ++G   ++ + +P+   N     + D  +  
Sbjct: 634 VLQVACGDYHTLALTDTDQVYSWGGTLHKKVGQ--RSGKPAPIQQLNKKGVIQVDCGDYH 691

Query: 232 SSTIEKAQKLVSEGMEKEKY---------MPIIWEP---FLVEGVEVVDIACGFDHSLVL 279
           S+ I +   + + G   + Y         +  I  P      EG ++V ++CG  H++ L
Sbjct: 692 SAAITQNGDIYTWGGGGQDYNKGQLGLGHVKDIENPEKLKFFEGKKIVKVSCGQFHTMAL 751

Query: 280 GRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFHPVSISSGLGHSLAICEVRSSNVTGGA 339
                L   G+  +G+LG  K +     V +NF+  +I     +   + E    N+  G 
Sbjct: 752 TSENELFGWGAGEFGELGTSKHEYTPIRVKVNFNQYNIL----YENILFENSIQNIKCGG 807

Query: 340 RG---------IVSWGWNRSSQLGRMGPDN 360
                      I S G+ R  QLG    +N
Sbjct: 808 HHTLLLTNNGYIYSSGYGRQGQLGLRNSEN 837



 Score = 52.8 bits (125), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 45/193 (23%), Positives = 90/193 (46%), Gaps = 10/193 (5%)

Query: 64  SDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCA 123
           + + ++  G +H+L +TNNG +++ G   + QLG    E++  +   + V  L +  +  
Sbjct: 798 NSIQNIKCGGHHTLLLTNNGYIYSSGYGRQGQLGLRNSENQCEF---QLVWTLTKKKIIK 854

Query: 124 AFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGH 183
             A    S A+ D   ++  G   RGQLGLG + +  I  + V +L G+    +S G  H
Sbjct: 855 IAAGWNHSLALSDQNDIFACGHGARGQLGLGDEESRTIF-THVVSLGGKNTATISAGGDH 913

Query: 184 ALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESD--QEISSSTIEKAQKL 241
           + A  +        Y     +    ++L++ PL+ + D S +    ++  S  +   QK+
Sbjct: 914 SWAVLDQNFPVKQNYRPPSPL----RSLDTRPLNKSRDVSPDLSMMKDNQSKFLPDEQKI 969

Query: 242 VSEGMEKEKYMPI 254
           + E + +  Y+ +
Sbjct: 970 IFEKILQVVYVEV 982



 Score = 40.0 bits (92), Expect = 1.9,   Method: Composition-based stats.
 Identities = 29/128 (22%), Positives = 56/128 (43%), Gaps = 15/128 (11%)

Query: 242 VSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQ 301
           +S G +K+ +      P  ++ + +  I+   +HS  +  NG L  CGS ++G+LG E+ 
Sbjct: 556 LSFGNQKQPFYNKPENPKNLDRIYIKQISTSQNHSACISANGELYVCGSALHGKLGLEEL 615

Query: 302 DMG------MFPVDINFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGR 355
            M       M P+      + ++ G  H+LA+ +            + SWG     ++G+
Sbjct: 616 TMANINKFQMIPIFKGIKVLQVACGDYHTLALTDTDQ---------VYSWGGTLHKKVGQ 666

Query: 356 MGPDNVPL 363
                 P+
Sbjct: 667 RSGKPAPI 674


>gi|383319324|ref|YP_005380165.1| Alpha-tubulin suppressor and related RCC1 domain-containing protein
           [Methanocella conradii HZ254]
 gi|379320694|gb|AFC99646.1| Alpha-tubulin suppressor and related RCC1 domain-containing protein
           [Methanocella conradii HZ254]
          Length = 427

 Score =  101 bits (251), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 86/313 (27%), Positives = 132/313 (42%), Gaps = 67/313 (21%)

Query: 54  YEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGA------LESRATW 107
           + P  VPGL SD+T +SAG +  + + ++G VW WG N   QLG G         + A  
Sbjct: 114 FSPLPVPGL-SDITGISAGQHFCVVLKSDGTVWTWGDNRYGQLGDGKQVTIDDYYAGAHR 172

Query: 108 NDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIV----P 163
            +P  V GL   NV    A  + ++A+ DDG++WVWG + R   G   + +  ++    P
Sbjct: 173 AEPGMVVGLS--NVTYVSAGPINAAAVKDDGTVWVWGANSRSLFGEAGENSTGLLAITTP 230

Query: 164 SRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRS 223
            +V+ L  E + +V  G  HALA   DG ++ WG ++ G++G  GK   + P+       
Sbjct: 231 VQVKGL--ENVKEVKLGHAHALALKNDGTVWAWGDNSYGQLGVAGKEFSNMPI------- 281

Query: 224 SESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGV-EVVDIACGFDHSLVLGRN 282
                                               +V G+  V  I+ G  HS+ L  +
Sbjct: 282 ------------------------------------MVHGLSNVTQISAGEGHSVALEGD 305

Query: 283 GVLLSCGSNVYGQLGREKQDMGMFPVDINFHPVSISSGLGHSLAICEVRSSNVTGGARGI 342
           G + + G N YGQLG         PV ++  P+   S  G +    +   +        I
Sbjct: 306 GTVWTWGQNKYGQLGDGTTSNSYSPVKVHLPPIKAVSARGFNTMALDYNGT--------I 357

Query: 343 VSWGWNRSSQLGR 355
             WG N   QLG 
Sbjct: 358 WIWGNNNYGQLGN 370



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 88/321 (27%), Positives = 136/321 (42%), Gaps = 53/321 (16%)

Query: 69  VSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASG 128
           ++ G   SLA+  NG  WAWG N + + G  A E       P  + GLD  NV +  A  
Sbjct: 18  IAQGPTVSLALDENGTAWAWGSNYDGECGIPASEGLEYVTRPVAIHGLD--NVTSIDAGE 75

Query: 129 VVSSAIGDDGSLWVWGKSKRGQLGLGKDIT------EAIVPSRVEALAGEKIVKVSFGWG 182
           +   A+  DG++  WG S  G LG   + T      E   P  V  L+   I  +S G  
Sbjct: 76  LFVIALKKDGTVLTWGWSIFGDLGYVPNNTTYNQSREHFSPLPVPGLS--DITGISAGQH 133

Query: 183 HALAQTEDGKLFGWGYSADGRIGNLGKALESSPLD----------------SNIDRSSES 226
             +    DG ++ WG   D R G LG   + +  D                SN+   S  
Sbjct: 134 FCVVLKSDGTVWTWG---DNRYGQLGDGKQVTIDDYYAGAHRAEPGMVVGLSNVTYVSAG 190

Query: 227 DQEISSSTIE----------KAQKLVSEGMEKEKYMPIIWEPFLVEGVE-VVDIACGFDH 275
              I+++ ++           ++ L  E  E    +  I  P  V+G+E V ++  G  H
Sbjct: 191 --PINAAAVKDDGTVWVWGANSRSLFGEAGENSTGLLAITTPVQVKGLENVKEVKLGHAH 248

Query: 276 SLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDIN--FHPVSISSGLGHSLAICEVRSS 333
           +L L  +G + + G N YGQLG   ++    P+ ++   +   IS+G GHS+A+      
Sbjct: 249 ALALKNDGTVWAWGDNSYGQLGVAGKEFSNMPIMVHGLSNVTQISAGEGHSVALE----- 303

Query: 334 NVTGGARGIVSWGWNRSSQLG 354
               G   + +WG N+  QLG
Sbjct: 304 ----GDGTVWTWGQNKYGQLG 320



 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 58/175 (33%), Positives = 86/175 (49%), Gaps = 18/175 (10%)

Query: 32  FGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRN 91
           FG+  + + GL    T        P +V GL  +V  V  GH H+LA+ N+G VWAWG N
Sbjct: 214 FGEAGENSTGLLAITT--------PVQVKGL-ENVKEVKLGHAHALALKNDGTVWAWGDN 264

Query: 92  NEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQL 151
           +  QLG    E     N P  V GL  V   +A     V  A+  DG++W WG++K GQL
Sbjct: 265 SYGQLGVAGKEFS---NMPIMVHGLSNVTQISAGEGHSV--ALEGDGTVWTWGQNKYGQL 319

Query: 152 GLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGN 206
           G G   + +  P +V     + +    F   + +A   +G ++ WG +  G++GN
Sbjct: 320 GDGT-TSNSYSPVKVHLPPIKAVSARGF---NTMALDYNGTIWIWGNNNYGQLGN 370



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 46/126 (36%), Positives = 66/126 (52%), Gaps = 16/126 (12%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYE--PTRVPGLPSDVTSVSAGHYHSLAVTNNGAVW 86
           V ++GD S G LG       V G  +   P  V GL S+VT +SAG  HS+A+  +G VW
Sbjct: 258 VWAWGDNSYGQLG-------VAGKEFSNMPIMVHGL-SNVTQISAGEGHSVALEGDGTVW 309

Query: 87  AWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKS 146
            WG+N   QLG G   +  +   P +V       + A  A G  + A+  +G++W+WG +
Sbjct: 310 TWGQNKYGQLGDGTTSNSYS---PVKVH---LPPIKAVSARGFNTMALDYNGTIWIWGNN 363

Query: 147 KRGQLG 152
             GQLG
Sbjct: 364 NYGQLG 369


>gi|301117316|ref|XP_002906386.1| regulator of chromosome condensation (RCC1)-like protein
           [Phytophthora infestans T30-4]
 gi|262107735|gb|EEY65787.1| regulator of chromosome condensation (RCC1)-like protein
           [Phytophthora infestans T30-4]
          Length = 419

 Score =  101 bits (251), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 106/373 (28%), Positives = 171/373 (45%), Gaps = 69/373 (18%)

Query: 23  SASGTAVVSFGDGSQGALGL-----PT-SLTGVGGDAYEPTRVPGLP-SDVTSVSAGHYH 75
           S S   V +FG    G LG      PT ++  V    + P ++  LP  D+ +VS G  H
Sbjct: 2   SNSECVVTAFGCNDDGQLGTGAKRRPTLAIDDVSASNF-PQQIGNLPDEDIVAVSCGSRH 60

Query: 76  SLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFAS--GVVSSA 133
           ++A+T++GAV++WG  +  QLG G L+     N+P+++   +Q  +   + S  G  S+A
Sbjct: 61  TMALTSSGAVYSWGWGSMGQLGHGDLK---IINEPQKIAFFEQERLEVDYISCGGCHSAA 117

Query: 134 IGDDGSLWVWGKSKRGQLGLGKDITEA--IVPSRV---EALAGEKIVKVSFGWGHALAQT 188
           +  DG+L+VWG+S  GQLGL K+   A   +P +    E  AGE IVKVS G  H  A T
Sbjct: 118 VTKDGTLYVWGESHWGQLGLPKEYEAAHESLPVKCPMPEGEAGETIVKVSCGGTHTAALT 177

Query: 189 EDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEK 248
             G+++ WG    G++G +G      P + ++  +S                        
Sbjct: 178 SFGRVYVWGRGDSGQLG-IGSVWMKDPENESLMGASR----------------------- 213

Query: 249 EKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPV 308
               P + + F   G +VV +ACG  HS  +   G +   G   YG LG  +      P 
Sbjct: 214 ----PHLLKAF--NGEKVVQVACGAFHSAAVTEQGHVYVWGKEDYGMLGVGQSSDQQIPK 267

Query: 309 DINFH---PV-SISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPDNV--- 361
            + +    PV  +S G  H++ +   +S +     RG          + GR+G  +    
Sbjct: 268 RLEYFDDIPVLRVSCGGWHTVVV--AKSGDCYAFGRG----------EYGRLGLGDTKSR 315

Query: 362 --PLVVEGLEGES 372
             P +V+ L+G++
Sbjct: 316 TRPHLVKALKGKT 328



 Score = 81.6 bits (200), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 93/350 (26%), Positives = 150/350 (42%), Gaps = 53/350 (15%)

Query: 17  SRIFMRSASGTAVVSFGDGSQGALGLPTSLTGVGGDAY---EPTRVPGLPSD---VTSVS 70
           SR  M   S  AV S+G GS G LG         GD     EP ++     +   V  +S
Sbjct: 58  SRHTMALTSSGAVYSWGWGSMGQLGH--------GDLKIINEPQKIAFFEQERLEVDYIS 109

Query: 71  AGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRV---EGLDQVNVCAAFAS 127
            G  HS AVT +G ++ WG ++  QLG       A  + P +    EG     +      
Sbjct: 110 CGGCHSAAVTKDGTLYVWGESHWGQLGLPKEYEAAHESLPVKCPMPEGEAGETIVKVSCG 169

Query: 128 GVVSSAIGDDGSLWVWGKSKRGQLGLG---------KDITEAIVPSRVEALAGEKIVKVS 178
           G  ++A+   G ++VWG+   GQLG+G         + +  A  P  ++A  GEK+V+V+
Sbjct: 170 GTHTAALTSFGRVYVWGRGDSGQLGIGSVWMKDPENESLMGASRPHLLKAFNGEKVVQVA 229

Query: 179 FGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEIS------- 231
            G  H+ A TE G ++ WG    G +G +G++      D  I +  E   +I        
Sbjct: 230 CGAFHSAAVTEQGHVYVWGKEDYGMLG-VGQS-----SDQQIPKRLEYFDDIPVLRVSCG 283

Query: 232 ---SSTIEKAQKLVSEGMEKEKYMPI-----IWEPFLV---EGVEVVDIACGFDHSLVLG 280
              +  + K+    + G  +   + +        P LV   +G  V+  ACG  H+L + 
Sbjct: 284 GWHTVVVAKSGDCYAFGRGEYGRLGLGDTKSRTRPHLVKALKGKTVIQAACGGSHTLFVT 343

Query: 281 RNGVLLSCGSNVYGQLGREKQDMGMFPVDINFHPVSI---SSGLGHSLAI 327
            +G     G   +G+LG         P  ++  P+ +   S+G  HS+A+
Sbjct: 344 SDGTAYVAGRPDHGRLGLADMKALGVPTRLDLGPIPVRQFSAGGAHSVAL 393


>gi|326490515|dbj|BAJ84921.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 419

 Score =  101 bits (251), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 105/346 (30%), Positives = 158/346 (45%), Gaps = 51/346 (14%)

Query: 32  FGDGSQGALGLPTSLTGVGGDAYEPTRVPGL---PSDV-TSVSAGHYHSLAVTNNGAVWA 87
           +G+G  G LGL     G     + PT  P     P+D   S+S G  H+L +T  G V+A
Sbjct: 36  WGNGDHGRLGL-----GALESRWSPTACPFFLARPADPPASLSCGGAHTLFLTEGGRVFA 90

Query: 88  WGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSK 147
            G N+  QLG G+  S     DP  V G  +  V    A    S A+  DG L+VWGK+ 
Sbjct: 91  TGLNDFGQLGIGS--SMPHTLDPVEVSGFHE-KVVQISAGNHHSCAVTADGELFVWGKNS 147

Query: 148 RGQLGLGKDITEAI-VPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGN 206
            GQLGLGK   + +  P +V+ LA  ++   + G  H++  TEDG+   WG +  GR+G+
Sbjct: 148 SGQLGLGKSAGKVVSTPRKVDYLADVRVKMTALGSEHSIVVTEDGEALSWGAAGGGRLGH 207

Query: 207 ------LGKALESSPLDSNIDRSSESDQ-------EISSSTIEKAQKLVSEGMEKEKYM- 252
                 LG A+ S+     + ++ +  +        + S+ I++   +   G + EK + 
Sbjct: 208 GHKSSFLGFAMTSNEYTPRLIKNLDGIKIKRIAAGMLHSACIDEKGTVFIFGQKTEKVLG 267

Query: 253 -----PIIWEPFLVEGVEVV-DIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMF 306
                P    P +VE ++   ++ACG  H+  +   G L S GSN  G LG     M  F
Sbjct: 268 RSNDAP---RPSVVEEIQFSEEVACGGYHTCAVTDRGDLYSWGSNENGCLGLGGTGMVRF 324

Query: 307 PVDINFH----PVS-ISSGLGHSLAICEVRSSNVTGGARGIVSWGW 347
           P  ++      PVS +S G  H+  I              I +WGW
Sbjct: 325 PEVVSSSLFKLPVSKVSCGWKHTAVI----------SGEDIYTWGW 360



 Score = 77.8 bits (190), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 82/336 (24%), Positives = 136/336 (40%), Gaps = 37/336 (11%)

Query: 26  GTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAV 85
           G  V + G    G LG+ +S+        +P  V G    V  +SAG++HS AVT +G +
Sbjct: 85  GGRVFATGLNDFGQLGIGSSMP----HTLDPVEVSGFHEKVVQISAGNHHSCAVTADGEL 140

Query: 86  WAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGK 145
           + WG+N+  QLG G    +   + P++V+ L  V V         S  + +DG    WG 
Sbjct: 141 FVWGKNSSGQLGLGKSAGKVV-STPRKVDYLADVRVKMTALGSEHSIVVTEDGEALSWGA 199

Query: 146 SKRGQLGLGKD--------ITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWG 197
           +  G+LG G           +    P  ++ L G KI +++ G  H+    E G +F +G
Sbjct: 200 AGGGRLGHGHKSSFLGFAMTSNEYTPRLIKNLDGIKIKRIAAGMLHSACIDEKGTVFIFG 259

Query: 198 YSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPI--- 254
              +  +G    A   S ++        +     +  +     L S G  +   + +   
Sbjct: 260 QKTEKVLGRSNDAPRPSVVEEIQFSEEVACGGYHTCAVTDRGDLYSWGSNENGCLGLGGT 319

Query: 255 --IWEPFLVEG----VEVVDIACGFDHSLVL-----------GRNGVLLSCGSNVYGQLG 297
             +  P +V      + V  ++CG+ H+ V+           G NG     G +  GQLG
Sbjct: 320 GMVRFPEVVSSSLFKLPVSKVSCGWKHTAVISGEDIYTWGWGGANGTFFEEGHSSGGQLG 379

Query: 298 REKQDMGMFPVDINFHP----VSISSGLGHSLAICE 329
                    P+ +  H     V +S G  H+ AI E
Sbjct: 380 HGNDVDYCEPMMVELHKNARAVHVSCGFNHTGAILE 415


>gi|310824879|ref|YP_003957237.1| regulator of chromosome condensation [Stigmatella aurantiaca
           DW4/3-1]
 gi|309397951|gb|ADO75410.1| Regulator of chromosome condensation [Stigmatella aurantiaca
           DW4/3-1]
          Length = 775

 Score =  100 bits (250), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 104/331 (31%), Positives = 156/331 (47%), Gaps = 36/331 (10%)

Query: 56  PTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEG 115
           P +V GL   V +V+ G YHSLAV ++G VW WG N   QLG G    R     P + +G
Sbjct: 263 PVQVQGLSGGV-AVAGGVYHSLAVRSDGTVWGWGANGVGQLGDGTPMRRVL--VPVQAQG 319

Query: 116 LDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIV 175
           L  V   AA  S  +S A+  DG++W WG +  G LG     T + VP +V  L+G   V
Sbjct: 320 LSGVEAVAAGHS--LSLAVRFDGTVWAWGGNSYGALGNDTIETMSTVPVQVPGLSGGVTV 377

Query: 176 KVSFGWGHALAQTEDGKLFGWGYSADGRIGN--LGKALESSPLD------SNIDRSSESD 227
             +    HALA   DG ++ WG +  G++G+    + L + P+       +   R   S 
Sbjct: 378 VAAS--SHALAVRSDGTVWAWGGNHYGQLGDGTTSERLVAVPVQGLSGVMAVAARQEHSL 435

Query: 228 QEISSSTI----EKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNG 283
              S +T+       +  + +G  + + +P+   P L     VV +A G  HSL +  +G
Sbjct: 436 AVRSDATVWAWGRNYEGQLGDGTTRRREVPVP-VPKL---SSVVAVAAGRYHSLAVRFDG 491

Query: 284 VLLSCGSNVYGQLGREKQDMGMFPVDI-NF-HPVSISSGLGHSLAICEVRSSNVTGGARG 341
            + + G N YGQ+G   +     PV + N    V++++G  HSL +   RS         
Sbjct: 492 TVWAWGDNEYGQVGDGTETSRKAPVRVPNLGGGVAVAAGENHSLVL---RSDGT------ 542

Query: 342 IVSWGWNRSSQLGR--MGPDNVPLVVEGLEG 370
           + +WG N   QLG        VP+ V+GL G
Sbjct: 543 VWAWGGNHYGQLGNGITSDSPVPVQVQGLSG 573



 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 119/390 (30%), Positives = 177/390 (45%), Gaps = 50/390 (12%)

Query: 6   SVVHNHVNVLTSRIFMRSASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLP-- 63
           S V   V  L+  + + +AS  A+    DG+  A G   +  G  GD     R+  +P  
Sbjct: 362 STVPVQVPGLSGGVTVVAASSHALAVRSDGTVWAWG--GNHYGQLGDGTTSERLVAVPVQ 419

Query: 64  --SDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNV 121
             S V +V+A   HSLAV ++  VWAWGRN E QLG G    R     P  V  L   +V
Sbjct: 420 GLSGVMAVAARQEHSLAVRSDATVWAWGRNYEGQLGDGTTRRREV---PVPVPKLS--SV 474

Query: 122 CAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGW 181
            A  A    S A+  DG++W WG ++ GQ+G G + T    P RV  L G   V V+ G 
Sbjct: 475 VAVAAGRYHSLAVRFDGTVWAWGDNEYGQVGDGTE-TSRKAPVRVPNLGGG--VAVAAGE 531

Query: 182 GHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSS---------------ES 226
            H+L    DG ++ WG +  G++GN       SP+   +   S                S
Sbjct: 532 NHSLVLRSDGTVWAWGGNHYGQLGN--GITSDSPVPVQVQGLSGGVAVAAGQYYSLAVRS 589

Query: 227 DQEISSSTIEKAQKLVSEGMEKEKYMPI-IWEPFLVEGVEVVDIACGFDHSLVLGRNGVL 285
           D  + +  +    +L  +G   +  +P+ +  P L  GV V   A G  H+LV+  +G +
Sbjct: 590 DGTVWAWGLNFEGQL-GDGTASDSPVPVRVQVPGLSGGVAV---AAGTSHALVVRSDGTV 645

Query: 286 LSCGSNVYGQLGR-EKQDMGMFPVDIN--FHPVSISSGLGHSLAICEVRSSNVTGGARGI 342
            + GSN  GQ+G    +   + PV +      +++++G  HSLA   VRS         +
Sbjct: 646 WAWGSNYDGQVGEGAPRRRVLMPVQVQGLSEGMAVAAGYNHSLA---VRSDG------SV 696

Query: 343 VSWGWNRSSQLGRMGPD--NVPLVVEGLEG 370
            +WG N +  LG    D   VP+  +GL G
Sbjct: 697 WAWGGNTAGVLGDGTTDRRTVPVQAQGLTG 726



 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 103/326 (31%), Positives = 157/326 (48%), Gaps = 37/326 (11%)

Query: 56  PTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEG 115
           P +  GL S V +V+AGH  SLAV  +G VWAWG N+   LG   +E+ +T   P +V G
Sbjct: 314 PVQAQGL-SGVEAVAAGHSLSLAVRFDGTVWAWGGNSYGALGNDTIETMST--VPVQVPG 370

Query: 116 LD-QVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKI 174
           L   V V AA +  +   A+  DG++W WG +  GQLG G   +E +V   V+ L+G  +
Sbjct: 371 LSGGVTVVAASSHAL---AVRSDGTVWAWGGNHYGQLGDGT-TSERLVAVPVQGLSG--V 424

Query: 175 VKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSP-----LDSNIDRSSESDQE 229
           + V+    H+LA   D  ++ WG + +G++G+        P     L S +  ++     
Sbjct: 425 MAVAARQEHSLAVRSDATVWAWGRNYEGQLGDGTTRRREVPVPVPKLSSVVAVAAGRYHS 484

Query: 230 IS---SSTI----EKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRN 282
           ++     T+    +     V +G E  +  P+   P L  GV V   A G +HSLVL  +
Sbjct: 485 LAVRFDGTVWAWGDNEYGQVGDGTETSRKAPVR-VPNLGGGVAV---AAGENHSLVLRSD 540

Query: 283 GVLLSCGSNVYGQLGREKQDMGMFPVDINFHP--VSISSGLGHSLAICEVRSSNVTGGAR 340
           G + + G N YGQLG         PV +      V++++G  +SLA   VRS        
Sbjct: 541 GTVWAWGGNHYGQLGNGITSDSPVPVQVQGLSGGVAVAAGQYYSLA---VRSDGT----- 592

Query: 341 GIVSWGWNRSSQLGRMGPDNVPLVVE 366
            + +WG N   QLG     + P+ V 
Sbjct: 593 -VWAWGLNFEGQLGDGTASDSPVPVR 617



 Score = 95.1 bits (235), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 94/306 (30%), Positives = 135/306 (44%), Gaps = 61/306 (19%)

Query: 56  PTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEG 115
           P RVP L   V +V+AG  HSL + ++G VWAWG N+  QLG G          P +V+G
Sbjct: 515 PVRVPNLGGGV-AVAAGENHSLVLRSDGTVWAWGGNHYGQLGNGITSDSPV---PVQVQG 570

Query: 116 LDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIV 175
           L      A  A    S A+  DG++W WG +  GQLG G   +++ VP RV+       V
Sbjct: 571 LS--GGVAVAAGQYYSLAVRSDGTVWAWGLNFEGQLGDGT-ASDSPVPVRVQVPGLSGGV 627

Query: 176 KVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTI 235
            V+ G  HAL    DG ++ WG + DG++G                              
Sbjct: 628 AVAAGTSHALVVRSDGTVWAWGSNYDGQVG------------------------------ 657

Query: 236 EKAQKLVSEGMEKEKYMPIIWEPFLVEGV-EVVDIACGFDHSLVLGRNGVLLSCGSNVYG 294
                   EG  + + +     P  V+G+ E + +A G++HSL +  +G + + G N  G
Sbjct: 658 --------EGAPRRRVL----MPVQVQGLSEGMAVAAGYNHSLAVRSDGSVWAWGGNTAG 705

Query: 295 QLGREKQDMGMFPVDIN--FHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQ 352
            LG    D    PV         ++++G  HSL    V  S+ TG A G      N S Q
Sbjct: 706 VLGDGTTDRRTVPVQAQGLTGARAVAAGESHSL----VLRSDGTGWAMGS-----NASGQ 756

Query: 353 LGRMGP 358
           +G  GP
Sbjct: 757 IGDGGP 762



 Score = 91.7 bits (226), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 99/323 (30%), Positives = 151/323 (46%), Gaps = 38/323 (11%)

Query: 48  GVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATW 107
           G   D   P  VPGL   V +V+AG  HSLA+ ++G VWAWG N E QLG G        
Sbjct: 155 GTASDCTVPAPVPGLSGGV-AVAAGGLHSLALRSDGTVWAWGSNFEGQLGDGTTNVSLV- 212

Query: 108 NDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVE 167
             P RV+ L    V A  A    S A+  DG++W WG +  G LG G   +   VP +V+
Sbjct: 213 --PVRVKKL--TGVVAVAAGEKHSLAVRSDGTVWTWGFNGYGALGDGTTSSRK-VPVQVQ 267

Query: 168 ALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGN---LGKAL-----------ES 213
            L+G   V V+ G  H+LA   DG ++GWG +  G++G+   + + L           E+
Sbjct: 268 GLSGG--VAVAGGVYHSLAVRSDGTVWGWGANGVGQLGDGTPMRRVLVPVQAQGLSGVEA 325

Query: 214 SPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGF 273
                ++  +   D  + +        L ++ +E    +P+   P L  GV VV  +   
Sbjct: 326 VAAGHSLSLAVRFDGTVWAWGGNSYGALGNDTIETMSTVPVQ-VPGLSGGVTVVAASS-- 382

Query: 274 DHSLVLGRNGVLLSCGSNVYGQL--GREKQDMGMFPVDINFHPVSISSGLGHSLAICEVR 331
            H+L +  +G + + G N YGQL  G   + +   PV      +++++   HSLA+    
Sbjct: 383 -HALAVRSDGTVWAWGGNHYGQLGDGTTSERLVAVPVQGLSGVMAVAARQEHSLAV---- 437

Query: 332 SSNVTGGARGIVSWGWNRSSQLG 354
            S+ T     + +WG N   QLG
Sbjct: 438 RSDAT-----VWAWGRNYEGQLG 455



 Score = 85.5 bits (210), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 78/253 (30%), Positives = 117/253 (46%), Gaps = 54/253 (21%)

Query: 48  GVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATW 107
           G+  D+  P +V GL   V +V+AG Y+SLAV ++G VWAWG N E QLG G        
Sbjct: 557 GITSDSPVPVQVQGLSGGV-AVAAGQYYSLAVRSDGTVWAWGLNFEGQLGDGTASDSPV- 614

Query: 108 NDPKRVE--GLDQ-VNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPS 164
             P RV+  GL   V V A  +  +V   +  DG++W WG +  GQ+G G      ++P 
Sbjct: 615 --PVRVQVPGLSGGVAVAAGTSHALV---VRSDGTVWAWGSNYDGQVGEGAPRRRVLMPV 669

Query: 165 RVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSS 224
           +V+ L+  + + V+ G+ H+LA   DG ++ WG +  G +G           D   DR +
Sbjct: 670 QVQGLS--EGMAVAAGYNHSLAVRSDGSVWAWGGNTAGVLG-----------DGTTDRRT 716

Query: 225 ESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGV 284
              Q              ++G+   +                  +A G  HSLVL  +G 
Sbjct: 717 VPVQ--------------AQGLTGARA-----------------VAAGESHSLVLRSDGT 745

Query: 285 LLSCGSNVYGQLG 297
             + GSN  GQ+G
Sbjct: 746 GWAMGSNASGQIG 758



 Score = 74.3 bits (181), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 64/175 (36%), Positives = 91/175 (52%), Gaps = 13/175 (7%)

Query: 48  GVGGDAYEPTRV--PGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRA 105
           G   D+  P RV  PGL   V +V+AG  H+L V ++G VWAWG N + Q+G GA   R 
Sbjct: 607 GTASDSPVPVRVQVPGLSGGV-AVAAGTSHALVVRSDGTVWAWGSNYDGQVGEGAPRRRV 665

Query: 106 TWNDPKRVEGLDQ-VNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPS 164
               P +V+GL + + V A +     S A+  DGS+W WG +  G LG G       VP 
Sbjct: 666 L--MPVQVQGLSEGMAVAAGYNH---SLAVRSDGSVWAWGGNTAGVLGDGT-TDRRTVPV 719

Query: 165 RVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALE-SSPLDS 218
           + + L G +   V+ G  H+L    DG  +  G +A G+IG+ G   + S+P  S
Sbjct: 720 QAQGLTGAR--AVAAGESHSLVLRSDGTGWAMGSNASGQIGDGGPTQQVSTPTRS 772



 Score = 71.2 bits (173), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 91/308 (29%), Positives = 129/308 (41%), Gaps = 67/308 (21%)

Query: 69  VSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASG 128
           ++ G  HS AV  +G VWA G N   QLG G    R     P +V+GL  V   A  A  
Sbjct: 76  IATGANHSWAVRPDGTVWAVGENVFGQLGDGTTSERRV---PVQVQGLSGVVAVAVGA-- 130

Query: 129 VVSSAIGDDGSLWVWGKSK-RGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQ 187
             S A+  DG++W  G++  +G  G   D T   VP+ V  L+G   V V+ G  H+LA 
Sbjct: 131 YHSLALRSDGTVWAVGRAACQGGDGTASDCT---VPAPVPGLSGG--VAVAAGGLHSLAL 185

Query: 188 TEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGME 247
             DG ++ WG + +G++G+    +   P+                    + +KL      
Sbjct: 186 RSDGTVWAWGSNFEGQLGDGTTNVSLVPV--------------------RVKKLTG---- 221

Query: 248 KEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFP 307
                             VV +A G  HSL +  +G + + G N YG LG         P
Sbjct: 222 ------------------VVAVAAGEKHSLAVRSDGTVWTWGFNGYGALGDGTTSSRKVP 263

Query: 308 VDINFHP--VSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPDN---VP 362
           V +      V+++ G+ HSLA   VRS     G      WG N   QLG   P     VP
Sbjct: 264 VQVQGLSGGVAVAGGVYHSLA---VRSDGTVWG------WGANGVGQLGDGTPMRRVLVP 314

Query: 363 LVVEGLEG 370
           +  +GL G
Sbjct: 315 VQAQGLSG 322


>gi|115374764|ref|ZP_01462040.1| BNR repeat domain protein [Stigmatella aurantiaca DW4/3-1]
 gi|115368241|gb|EAU67200.1| BNR repeat domain protein [Stigmatella aurantiaca DW4/3-1]
          Length = 750

 Score =  100 bits (250), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 104/331 (31%), Positives = 156/331 (47%), Gaps = 36/331 (10%)

Query: 56  PTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEG 115
           P +V GL   V +V+ G YHSLAV ++G VW WG N   QLG G    R     P + +G
Sbjct: 238 PVQVQGLSGGV-AVAGGVYHSLAVRSDGTVWGWGANGVGQLGDGTPMRRVL--VPVQAQG 294

Query: 116 LDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIV 175
           L  V   AA  S  +S A+  DG++W WG +  G LG     T + VP +V  L+G   V
Sbjct: 295 LSGVEAVAAGHS--LSLAVRFDGTVWAWGGNSYGALGNDTIETMSTVPVQVPGLSGGVTV 352

Query: 176 KVSFGWGHALAQTEDGKLFGWGYSADGRIGN--LGKALESSPLD------SNIDRSSESD 227
             +    HALA   DG ++ WG +  G++G+    + L + P+       +   R   S 
Sbjct: 353 VAAS--SHALAVRSDGTVWAWGGNHYGQLGDGTTSERLVAVPVQGLSGVMAVAARQEHSL 410

Query: 228 QEISSSTI----EKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNG 283
              S +T+       +  + +G  + + +P+   P L     VV +A G  HSL +  +G
Sbjct: 411 AVRSDATVWAWGRNYEGQLGDGTTRRREVPVP-VPKL---SSVVAVAAGRYHSLAVRFDG 466

Query: 284 VLLSCGSNVYGQLGREKQDMGMFPVDI-NF-HPVSISSGLGHSLAICEVRSSNVTGGARG 341
            + + G N YGQ+G   +     PV + N    V++++G  HSL +   RS         
Sbjct: 467 TVWAWGDNEYGQVGDGTETSRKAPVRVPNLGGGVAVAAGENHSLVL---RSDGT------ 517

Query: 342 IVSWGWNRSSQLGR--MGPDNVPLVVEGLEG 370
           + +WG N   QLG        VP+ V+GL G
Sbjct: 518 VWAWGGNHYGQLGNGITSDSPVPVQVQGLSG 548



 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 119/390 (30%), Positives = 177/390 (45%), Gaps = 50/390 (12%)

Query: 6   SVVHNHVNVLTSRIFMRSASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLP-- 63
           S V   V  L+  + + +AS  A+    DG+  A G   +  G  GD     R+  +P  
Sbjct: 337 STVPVQVPGLSGGVTVVAASSHALAVRSDGTVWAWG--GNHYGQLGDGTTSERLVAVPVQ 394

Query: 64  --SDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNV 121
             S V +V+A   HSLAV ++  VWAWGRN E QLG G    R     P  V  L   +V
Sbjct: 395 GLSGVMAVAARQEHSLAVRSDATVWAWGRNYEGQLGDGTTRRREV---PVPVPKLS--SV 449

Query: 122 CAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGW 181
            A  A    S A+  DG++W WG ++ GQ+G G + T    P RV  L G   V V+ G 
Sbjct: 450 VAVAAGRYHSLAVRFDGTVWAWGDNEYGQVGDGTE-TSRKAPVRVPNLGGG--VAVAAGE 506

Query: 182 GHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSS---------------ES 226
            H+L    DG ++ WG +  G++GN       SP+   +   S                S
Sbjct: 507 NHSLVLRSDGTVWAWGGNHYGQLGN--GITSDSPVPVQVQGLSGGVAVAAGQYYSLAVRS 564

Query: 227 DQEISSSTIEKAQKLVSEGMEKEKYMPI-IWEPFLVEGVEVVDIACGFDHSLVLGRNGVL 285
           D  + +  +    +L  +G   +  +P+ +  P L  GV V   A G  H+LV+  +G +
Sbjct: 565 DGTVWAWGLNFEGQL-GDGTASDSPVPVRVQVPGLSGGVAV---AAGTSHALVVRSDGTV 620

Query: 286 LSCGSNVYGQLGR-EKQDMGMFPVDIN--FHPVSISSGLGHSLAICEVRSSNVTGGARGI 342
            + GSN  GQ+G    +   + PV +      +++++G  HSLA   VRS         +
Sbjct: 621 WAWGSNYDGQVGEGAPRRRVLMPVQVQGLSEGMAVAAGYNHSLA---VRSDG------SV 671

Query: 343 VSWGWNRSSQLGRMGPD--NVPLVVEGLEG 370
            +WG N +  LG    D   VP+  +GL G
Sbjct: 672 WAWGGNTAGVLGDGTTDRRTVPVQAQGLTG 701



 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 103/326 (31%), Positives = 157/326 (48%), Gaps = 37/326 (11%)

Query: 56  PTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEG 115
           P +  GL S V +V+AGH  SLAV  +G VWAWG N+   LG   +E+ +T   P +V G
Sbjct: 289 PVQAQGL-SGVEAVAAGHSLSLAVRFDGTVWAWGGNSYGALGNDTIETMST--VPVQVPG 345

Query: 116 LD-QVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKI 174
           L   V V AA +  +   A+  DG++W WG +  GQLG G   +E +V   V+ L+G  +
Sbjct: 346 LSGGVTVVAASSHAL---AVRSDGTVWAWGGNHYGQLGDGT-TSERLVAVPVQGLSG--V 399

Query: 175 VKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSP-----LDSNIDRSSESDQE 229
           + V+    H+LA   D  ++ WG + +G++G+        P     L S +  ++     
Sbjct: 400 MAVAARQEHSLAVRSDATVWAWGRNYEGQLGDGTTRRREVPVPVPKLSSVVAVAAGRYHS 459

Query: 230 IS---SSTI----EKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRN 282
           ++     T+    +     V +G E  +  P+   P L  GV V   A G +HSLVL  +
Sbjct: 460 LAVRFDGTVWAWGDNEYGQVGDGTETSRKAPVR-VPNLGGGVAV---AAGENHSLVLRSD 515

Query: 283 GVLLSCGSNVYGQLGREKQDMGMFPVDINFHP--VSISSGLGHSLAICEVRSSNVTGGAR 340
           G + + G N YGQLG         PV +      V++++G  +SLA   VRS        
Sbjct: 516 GTVWAWGGNHYGQLGNGITSDSPVPVQVQGLSGGVAVAAGQYYSLA---VRSDGT----- 567

Query: 341 GIVSWGWNRSSQLGRMGPDNVPLVVE 366
            + +WG N   QLG     + P+ V 
Sbjct: 568 -VWAWGLNFEGQLGDGTASDSPVPVR 592



 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 94/306 (30%), Positives = 135/306 (44%), Gaps = 61/306 (19%)

Query: 56  PTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEG 115
           P RVP L   V +V+AG  HSL + ++G VWAWG N+  QLG G          P +V+G
Sbjct: 490 PVRVPNLGGGV-AVAAGENHSLVLRSDGTVWAWGGNHYGQLGNGITSDSPV---PVQVQG 545

Query: 116 LDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIV 175
           L      A  A    S A+  DG++W WG +  GQLG G   +++ VP RV+       V
Sbjct: 546 LS--GGVAVAAGQYYSLAVRSDGTVWAWGLNFEGQLGDGT-ASDSPVPVRVQVPGLSGGV 602

Query: 176 KVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTI 235
            V+ G  HAL    DG ++ WG + DG++G                              
Sbjct: 603 AVAAGTSHALVVRSDGTVWAWGSNYDGQVG------------------------------ 632

Query: 236 EKAQKLVSEGMEKEKYMPIIWEPFLVEGV-EVVDIACGFDHSLVLGRNGVLLSCGSNVYG 294
                   EG  + + +     P  V+G+ E + +A G++HSL +  +G + + G N  G
Sbjct: 633 --------EGAPRRRVL----MPVQVQGLSEGMAVAAGYNHSLAVRSDGSVWAWGGNTAG 680

Query: 295 QLGREKQDMGMFPVDIN--FHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQ 352
            LG    D    PV         ++++G  HSL    V  S+ TG A G      N S Q
Sbjct: 681 VLGDGTTDRRTVPVQAQGLTGARAVAAGESHSL----VLRSDGTGWAMGS-----NASGQ 731

Query: 353 LGRMGP 358
           +G  GP
Sbjct: 732 IGDGGP 737



 Score = 91.7 bits (226), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 99/323 (30%), Positives = 151/323 (46%), Gaps = 38/323 (11%)

Query: 48  GVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATW 107
           G   D   P  VPGL   V +V+AG  HSLA+ ++G VWAWG N E QLG G        
Sbjct: 130 GTASDCTVPAPVPGLSGGV-AVAAGGLHSLALRSDGTVWAWGSNFEGQLGDGTTNVSLV- 187

Query: 108 NDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVE 167
             P RV+ L    V A  A    S A+  DG++W WG +  G LG G   +   VP +V+
Sbjct: 188 --PVRVKKL--TGVVAVAAGEKHSLAVRSDGTVWTWGFNGYGALGDGTTSSRK-VPVQVQ 242

Query: 168 ALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGN---LGKAL-----------ES 213
            L+G   V V+ G  H+LA   DG ++GWG +  G++G+   + + L           E+
Sbjct: 243 GLSGG--VAVAGGVYHSLAVRSDGTVWGWGANGVGQLGDGTPMRRVLVPVQAQGLSGVEA 300

Query: 214 SPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGF 273
                ++  +   D  + +        L ++ +E    +P+   P L  GV VV  +   
Sbjct: 301 VAAGHSLSLAVRFDGTVWAWGGNSYGALGNDTIETMSTVPVQ-VPGLSGGVTVVAASS-- 357

Query: 274 DHSLVLGRNGVLLSCGSNVYGQL--GREKQDMGMFPVDINFHPVSISSGLGHSLAICEVR 331
            H+L +  +G + + G N YGQL  G   + +   PV      +++++   HSLA+    
Sbjct: 358 -HALAVRSDGTVWAWGGNHYGQLGDGTTSERLVAVPVQGLSGVMAVAARQEHSLAV---- 412

Query: 332 SSNVTGGARGIVSWGWNRSSQLG 354
            S+ T     + +WG N   QLG
Sbjct: 413 RSDAT-----VWAWGRNYEGQLG 430



 Score = 85.5 bits (210), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 78/253 (30%), Positives = 117/253 (46%), Gaps = 54/253 (21%)

Query: 48  GVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATW 107
           G+  D+  P +V GL   V +V+AG Y+SLAV ++G VWAWG N E QLG G        
Sbjct: 532 GITSDSPVPVQVQGLSGGV-AVAAGQYYSLAVRSDGTVWAWGLNFEGQLGDGTASDSPV- 589

Query: 108 NDPKRVE--GLDQ-VNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPS 164
             P RV+  GL   V V A  +  +V   +  DG++W WG +  GQ+G G      ++P 
Sbjct: 590 --PVRVQVPGLSGGVAVAAGTSHALV---VRSDGTVWAWGSNYDGQVGEGAPRRRVLMPV 644

Query: 165 RVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSS 224
           +V+ L+  + + V+ G+ H+LA   DG ++ WG +  G +G           D   DR +
Sbjct: 645 QVQGLS--EGMAVAAGYNHSLAVRSDGSVWAWGGNTAGVLG-----------DGTTDRRT 691

Query: 225 ESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGV 284
              Q              ++G+   +                  +A G  HSLVL  +G 
Sbjct: 692 VPVQ--------------AQGLTGARA-----------------VAAGESHSLVLRSDGT 720

Query: 285 LLSCGSNVYGQLG 297
             + GSN  GQ+G
Sbjct: 721 GWAMGSNASGQIG 733



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 64/175 (36%), Positives = 91/175 (52%), Gaps = 13/175 (7%)

Query: 48  GVGGDAYEPTRV--PGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRA 105
           G   D+  P RV  PGL   V +V+AG  H+L V ++G VWAWG N + Q+G GA   R 
Sbjct: 582 GTASDSPVPVRVQVPGLSGGV-AVAAGTSHALVVRSDGTVWAWGSNYDGQVGEGAPRRRV 640

Query: 106 TWNDPKRVEGLDQ-VNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPS 164
               P +V+GL + + V A +     S A+  DGS+W WG +  G LG G       VP 
Sbjct: 641 L--MPVQVQGLSEGMAVAAGYNH---SLAVRSDGSVWAWGGNTAGVLGDGT-TDRRTVPV 694

Query: 165 RVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALE-SSPLDS 218
           + + L G +   V+ G  H+L    DG  +  G +A G+IG+ G   + S+P  S
Sbjct: 695 QAQGLTGAR--AVAAGESHSLVLRSDGTGWAMGSNASGQIGDGGPTQQVSTPTRS 747



 Score = 71.2 bits (173), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 91/308 (29%), Positives = 129/308 (41%), Gaps = 67/308 (21%)

Query: 69  VSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASG 128
           ++ G  HS AV  +G VWA G N   QLG G    R     P +V+GL  V   A  A  
Sbjct: 51  IATGANHSWAVRPDGTVWAVGENVFGQLGDGTTSERRV---PVQVQGLSGVVAVAVGA-- 105

Query: 129 VVSSAIGDDGSLWVWGKSK-RGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQ 187
             S A+  DG++W  G++  +G  G   D T   VP+ V  L+G   V V+ G  H+LA 
Sbjct: 106 YHSLALRSDGTVWAVGRAACQGGDGTASDCT---VPAPVPGLSGG--VAVAAGGLHSLAL 160

Query: 188 TEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGME 247
             DG ++ WG + +G++G+    +   P+                    + +KL      
Sbjct: 161 RSDGTVWAWGSNFEGQLGDGTTNVSLVPV--------------------RVKKLTG---- 196

Query: 248 KEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFP 307
                             VV +A G  HSL +  +G + + G N YG LG         P
Sbjct: 197 ------------------VVAVAAGEKHSLAVRSDGTVWTWGFNGYGALGDGTTSSRKVP 238

Query: 308 VDINFHP--VSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPDN---VP 362
           V +      V+++ G+ HSLA   VRS     G      WG N   QLG   P     VP
Sbjct: 239 VQVQGLSGGVAVAGGVYHSLA---VRSDGTVWG------WGANGVGQLGDGTPMRRVLVP 289

Query: 363 LVVEGLEG 370
           +  +GL G
Sbjct: 290 VQAQGLSG 297


>gi|196004949|ref|XP_002112341.1| hypothetical protein TRIADDRAFT_56257 [Trichoplax adhaerens]
 gi|190584382|gb|EDV24451.1| hypothetical protein TRIADDRAFT_56257 [Trichoplax adhaerens]
          Length = 794

 Score =  100 bits (250), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 78/272 (28%), Positives = 132/272 (48%), Gaps = 56/272 (20%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGL-PSDVTSVSAGHYHSLAVTNNGAVWA 87
           + +FG+   G LG+ ++ T       +PT V  L P  +T V+AG +H+LAVT++  +++
Sbjct: 56  LFTFGNNEWGQLGIGSNKT-----RNKPTTVKALKPEKITHVAAGRFHTLAVTDSNKLYS 110

Query: 88  WGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSK 147
           +G+ +E  LG G        N P  +E L+  +V      G  S+AI  +G L++WG + 
Sbjct: 111 FGQGSEGALGHG---DETDLNMPTSIESLEDKDVNIIACGGYHSAAITKNGELYIWGSNS 167

Query: 148 RGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNL 207
            GQLGL  D      P+ ++   G+ ++ V+ G+ H    T DGKL+ +G +  G++G L
Sbjct: 168 EGQLGLKNDTIS--YPTMLD--LGKSVISVACGYYHTAVVTADGKLYTFGETEGGKLG-L 222

Query: 208 GKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGV--E 265
           G                    +I +  + K                    P +V+G+  +
Sbjct: 223 G--------------------DIEAHKVTK--------------------PKVVKGISGK 242

Query: 266 VVDIACGFDHSLVLGRNGVLLSCGSNVYGQLG 297
           VV +ACG +H++ L  +G + + GS   GQLG
Sbjct: 243 VVKVACGGNHTVALTASGQVYTFGSGQNGQLG 274



 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 95/314 (30%), Positives = 149/314 (47%), Gaps = 71/314 (22%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLP-SDVTSVSAGHYHSLAVTNNGAVWA 87
           + SFG GS+GALG      G   D   PT +  L   DV  ++ G YHS A+T NG ++ 
Sbjct: 108 LYSFGQGSEGALG-----HGDETDLNMPTSIESLEDKDVNIIACGGYHSAAITKNGELYI 162

Query: 88  WGRNNEVQLGRGALESRATWNDPKRVE-GLDQVNV-CAAFASGVVSSAIGDDGSLWVWGK 145
           WG N+E QLG        T + P  ++ G   ++V C  + + VV++    DG L+ +G+
Sbjct: 163 WGSNSEGQLGL----KNDTISYPTMLDLGKSVISVACGYYHTAVVTA----DGKLYTFGE 214

Query: 146 SKRGQLGLGKDITEAIV--PSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGR 203
           ++ G+LGLG DI    V  P  V+ ++G K+VKV+ G  H +A T  G+++ +G   +G+
Sbjct: 215 TEGGKLGLG-DIEAHKVTKPKVVKGISG-KVVKVACGGNHTVALTASGQVYTFGSGQNGQ 272

Query: 204 IGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEG 263
           +G     L S  +DSNI                                     P LVE 
Sbjct: 273 LG-----LGSKIMDSNI-------------------------------------PKLVEA 290

Query: 264 V---EVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDM-GMF-PVDIN----FHP 314
           +   ++  IACG  H+ V+   G L + G   +G+LG+  +    +F PV +     F  
Sbjct: 291 LSKRKIKHIACGESHTAVVSDKGELFTFGDGRHGKLGQGDESFSNLFKPVKVQRLKEFIV 350

Query: 315 VSISSGLGHSLAIC 328
           + I+ G  H++  C
Sbjct: 351 LHIACGGCHTIVAC 364



 Score = 70.5 bits (171), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 73/267 (27%), Positives = 125/267 (46%), Gaps = 57/267 (21%)

Query: 134 IGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKL 193
           + ++G L+ +G ++ GQLG+G + T    P+ V+AL  EKI  V+ G  H LA T+  KL
Sbjct: 50  VTENGRLFTFGNNEWGQLGIGSNKTRN-KPTTVKALKPEKITHVAAGRFHTLAVTDSNKL 108

Query: 194 FGWGYSADGRIGNLGKALESSPLDSNIDRSSES--DQEIS--------SSTIEKAQKLV- 242
           + +G  ++G +G+          D N+  S ES  D++++        S+ I K  +L  
Sbjct: 109 YSFGQGSEGALGH------GDETDLNMPTSIESLEDKDVNIIACGGYHSAAITKNGELYI 162

Query: 243 ----SEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGR 298
               SEG    K   I +   L  G  V+ +ACG+ H+ V+  +G L + G    G+LG 
Sbjct: 163 WGSNSEGQLGLKNDTISYPTMLDLGKSVISVACGYYHTAVVTADGKLYTFGETEGGKLG- 221

Query: 299 EKQDMGMFPVDINFHPVS--------------ISSGLGHSLAICEVRSSNVTGGARGIVS 344
               +G    DI  H V+              ++ G  H++A+           +  + +
Sbjct: 222 ----LG----DIEAHKVTKPKVVKGISGKVVKVACGGNHTVALT---------ASGQVYT 264

Query: 345 WGWNRSSQLG---RMGPDNVPLVVEGL 368
           +G  ++ QLG   ++   N+P +VE L
Sbjct: 265 FGSGQNGQLGLGSKIMDSNIPKLVEAL 291



 Score = 45.8 bits (107), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 34/117 (29%), Positives = 54/117 (46%), Gaps = 15/117 (12%)

Query: 259 FLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDIN-FHPVSI 317
           F +   +V DIACG +H++V+  NG L + G+N +GQLG         P  +    P  I
Sbjct: 30  FWIRSDKVTDIACGDEHTVVVTENGRLFTFGNNEWGQLGIGSNKTRNKPTTVKALKPEKI 89

Query: 318 S---SGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPD--NVPLVVEGLE 369
           +   +G  H+LA+ +         +  + S+G      LG       N+P  +E LE
Sbjct: 90  THVAAGRFHTLAVTD---------SNKLYSFGQGSEGALGHGDETDLNMPTSIESLE 137



 Score = 44.3 bits (103), Expect = 0.086,   Method: Compositional matrix adjust.
 Identities = 53/215 (24%), Positives = 92/215 (42%), Gaps = 30/215 (13%)

Query: 129 VVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQT 188
           V  + I + G+++ +GKS+      G + T          +  +K+  ++ G  H +  T
Sbjct: 3   VDDNDIPETGAVFTFGKSR-----FGDNRTNKFW------IRSDKVTDIACGDEHTVVVT 51

Query: 189 EDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQ----EISSSTIEKAQKLVS- 243
           E+G+LF +G +  G++G       + P      +  +          +  +  + KL S 
Sbjct: 52  ENGRLFTFGNNEWGQLGIGSNKTRNKPTTVKALKPEKITHVAAGRFHTLAVTDSNKLYSF 111

Query: 244 ---------EGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYG 294
                     G E +  MP   E   +E  +V  IACG  HS  + +NG L   GSN  G
Sbjct: 112 GQGSEGALGHGDETDLNMPTSIES--LEDKDVNIIACGGYHSAAITKNGELYIWGSNSEG 169

Query: 295 QLGREKQDMGMFP--VDINFHPVSISSGLGHSLAI 327
           QLG  K D   +P  +D+    +S++ G  H+  +
Sbjct: 170 QLGL-KNDTISYPTMLDLGKSVISVACGYYHTAVV 203


>gi|47221092|emb|CAG12786.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 527

 Score =  100 bits (250), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 58/179 (32%), Positives = 98/179 (54%), Gaps = 5/179 (2%)

Query: 66  VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAF 125
           V  V+ G +H++A+T +G V+AWG NN  Q+G G+  ++ T   P+RV    Q       
Sbjct: 130 VIEVACGSHHTIALTTDGEVFAWGYNNSGQVGSGSTANQPT---PRRVSSCLQNKAVVNI 186

Query: 126 ASG-VVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHA 184
           A G + S A+ D G ++ WG +  GQLGLG +  +   P R+ AL G  +++V+ G+ H 
Sbjct: 187 ACGQLCSMAVLDSGEIYGWGYNCNGQLGLGNNGNQQ-TPCRIAALQGVSVIQVACGYAHT 245

Query: 185 LAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVS 243
           LA T++G ++ WG ++ G++G   K  ++ P   N D+   ++     ++   A K  S
Sbjct: 246 LALTDEGFVYAWGANSYGQLGTGNKCNQALPTLINTDKERMAEVAACHTSHTSAAKTQS 304



 Score = 78.2 bits (191), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 75/287 (26%), Positives = 119/287 (41%), Gaps = 53/287 (18%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLP-SDVTSVSAGHYHSLAV-TNNGAVW 86
           V + G    G LGL     G      EP R+  L    + S+S G    +A+ T +G V+
Sbjct: 43  VFALGTNCSGCLGL-----GDLQSTIEPRRIDALCGKKIVSLSYGTGPHVAIATADGEVF 97

Query: 87  AWGRNNEVQLGRGALESRATWNDPKRVE-GLDQVNVCAAFASGVVSSAIGDDGSLWVWGK 145
           +WG N   QLG G      T   P  V   L    V         + A+  DG ++ WG 
Sbjct: 98  SWGHNGYSQLGNGTTNHGLT---PALVSTNLLGKRVIEVACGSHHTIALTTDGEVFAWGY 154

Query: 146 SKRGQLGLGKDITEAIVPSRVE-ALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRI 204
           +  GQ+G G    +   P RV   L  + +V ++ G   ++A  + G+++GWGY+ +G++
Sbjct: 155 NNSGQVGSGSTANQP-TPRRVSSCLQNKAVVNIACGQLCSMAVLDSGEIYGWGYNCNGQL 213

Query: 205 GNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGV 264
           G      + +P              I++                            ++GV
Sbjct: 214 GLGNNGNQQTPC------------RIAA----------------------------LQGV 233

Query: 265 EVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDIN 311
            V+ +ACG+ H+L L   G + + G+N YGQLG   +     P  IN
Sbjct: 234 SVIQVACGYAHTLALTDEGFVYAWGANSYGQLGTGNKCNQALPTLIN 280



 Score = 67.8 bits (164), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 69/271 (25%), Positives = 114/271 (42%), Gaps = 59/271 (21%)

Query: 110 PKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEAL 169
           P+ +  + Q  V  + A+  +   + D+  ++  G +  G LGLG D+   I P R++AL
Sbjct: 15  PEELRLIRQACVFGSAANEAIYVTVNDE--VFALGTNCSGCLGLG-DLQSTIEPRRIDAL 71

Query: 170 AGEKIVKVSFGWG-HALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQ 228
            G+KIV +S+G G H    T DG++F WG++   ++GN                      
Sbjct: 72  CGKKIVSLSYGTGPHVAIATADGEVFSWGHNGYSQLGN---------------------- 109

Query: 229 EISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSC 288
                           G       P +    L+ G  V+++ACG  H++ L  +G + + 
Sbjct: 110 ----------------GTTNHGLTPALVSTNLL-GKRVIEVACGSHHTIALTTDGEVFAW 152

Query: 289 GSNVYGQLGREKQDMGMFPVDI-----NFHPVSISSGLGHSLAICEVRSSNVTGGARGIV 343
           G N  GQ+G         P  +     N   V+I+ G   S+A+  + S  + G      
Sbjct: 153 GYNNSGQVGSGSTANQPTPRRVSSCLQNKAVVNIACGQLCSMAV--LDSGEIYG------ 204

Query: 344 SWGWNRSSQ--LGRMGPDNVPLVVEGLEGES 372
            WG+N + Q  LG  G    P  +  L+G S
Sbjct: 205 -WGYNCNGQLGLGNNGNQQTPCRIAALQGVS 234


>gi|118084855|ref|XP_417055.2| PREDICTED: RCC1 and BTB domain-containing protein 2 [Gallus gallus]
          Length = 566

 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 59/188 (31%), Positives = 100/188 (53%), Gaps = 9/188 (4%)

Query: 66  VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAF 125
           V  V+ G +HS+ +T++G V+ WG NN  Q+G G   S A    P+RV    Q  V    
Sbjct: 170 VIEVACGSHHSMVLTSDGEVYTWGYNNSGQVGSG---STANQPIPRRVTSCLQNKVVVNI 226

Query: 126 ASG-VVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHA 184
           A G + S A+ ++G ++VWG +  GQLGLG    +   P R+ AL G ++ +V+ G  H 
Sbjct: 227 ACGQMCSMAVVENGEVYVWGYNGNGQLGLGSSGNQP-TPCRIAALQGIRVQRVACGCAHT 285

Query: 185 LAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSE 244
           L  T++G+++ WG ++ G++G   K+ +S P    +D+    D+ +  +    A    ++
Sbjct: 286 LVLTDEGQIYAWGANSYGQLGTGNKSNQSYPTTVTVDK----DRVVEIAACHSAHTSAAK 341

Query: 245 GMEKEKYM 252
               + YM
Sbjct: 342 TQSGQVYM 349



 Score = 91.3 bits (225), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 68/249 (27%), Positives = 117/249 (46%), Gaps = 19/249 (7%)

Query: 77  LAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNV-CAAFASGVVSSAIG 135
           L VT N  V+  G N    LG G ++S     +PKR++ L    + C ++ SG       
Sbjct: 75  LYVTENDEVFVLGMNCSGCLGTGDIQSTI---EPKRLDSLCGKKIACLSYGSGPHVVLAT 131

Query: 136 DDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEA-LAGEKIVKVSFGWGHALAQTEDGKLF 194
           ++G ++ WG +   QLG G      +VP +V   L  +K+++V+ G  H++  T DG+++
Sbjct: 132 EEGEVYTWGHNAYSQLGNGT-TNHGLVPCQVSTNLVNKKVIEVACGSHHSMVLTSDGEVY 190

Query: 195 GWGYSADGRIGNLGKALESSP------LDSNIDRSSESDQEISSSTIEKAQKLV------ 242
            WGY+  G++G+   A +  P      L + +  +    Q  S + +E  +  V      
Sbjct: 191 TWGYNNSGQVGSGSTANQPIPRRVTSCLQNKVVVNIACGQMCSMAVVENGEVYVWGYNGN 250

Query: 243 -SEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQ 301
              G+      P       ++G+ V  +ACG  H+LVL   G + + G+N YGQLG   +
Sbjct: 251 GQLGLGSSGNQPTPCRIAALQGIRVQRVACGCAHTLVLTDEGQIYAWGANSYGQLGTGNK 310

Query: 302 DMGMFPVDI 310
               +P  +
Sbjct: 311 SNQSYPTTV 319



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 63/245 (25%), Positives = 108/245 (44%), Gaps = 57/245 (23%)

Query: 134 IGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWG-HALAQTEDGK 192
           + ++  ++V G +  G LG G DI   I P R+++L G+KI  +S+G G H +  TE+G+
Sbjct: 77  VTENDEVFVLGMNCSGCLGTG-DIQSTIEPKRLDSLCGKKIACLSYGSGPHVVLATEEGE 135

Query: 193 LFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYM 252
           ++ WG++A  ++GN        P             ++S++ + K               
Sbjct: 136 VYTWGHNAYSQLGNGTTNHGLVPC------------QVSTNLVNK--------------- 168

Query: 253 PIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDI-- 310
                       +V+++ACG  HS+VL  +G + + G N  GQ+G         P  +  
Sbjct: 169 ------------KVIEVACGSHHSMVLTSDGEVYTWGYNNSGQVGSGSTANQPIPRRVTS 216

Query: 311 ---NFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQ--LGRMGPDNVPLVV 365
              N   V+I+ G   S+A+       V  G   +  WG+N + Q  LG  G    P  +
Sbjct: 217 CLQNKVVVNIACGQMCSMAV-------VENGE--VYVWGYNGNGQLGLGSSGNQPTPCRI 267

Query: 366 EGLEG 370
             L+G
Sbjct: 268 AALQG 272



 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 41/124 (33%), Positives = 61/124 (49%), Gaps = 11/124 (8%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPS-DVTSVSAGHYHSLAVTNNGAVWA 87
           V  +G    G LGL     G  G+   P R+  L    V  V+ G  H+L +T+ G ++A
Sbjct: 242 VYVWGYNGNGQLGL-----GSSGNQPTPCRIAALQGIRVQRVACGCAHTLVLTDEGQIYA 296

Query: 88  WGRNNEVQLGRGALESRATWNDPKRVE-GLDQVNVCAAFASGVVSSAIGDDGSLWVWGKS 146
           WG N+  QLG G   +++  + P  V    D+V   AA  S   S+A    G +++WG+ 
Sbjct: 297 WGANSYGQLGTG---NKSNQSYPTTVTVDKDRVVEIAACHSAHTSAAKTQSGQVYMWGQC 353

Query: 147 KRGQ 150
            RGQ
Sbjct: 354 -RGQ 356


>gi|296196030|ref|XP_002745681.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC6 [Callithrix
           jacchus]
          Length = 1006

 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 81/274 (29%), Positives = 126/274 (45%), Gaps = 45/274 (16%)

Query: 25  SGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPS-DVTSVSAGHYHSLAVTNNG 83
           + ++V S G+ S+G LG         GD  EP  V  L +     VS G  HSLAV + G
Sbjct: 40  TNSSVHSCGENSRGQLG---RRGAPRGDLPEP--VQALKTLKFNLVSCGKEHSLAVCHKG 94

Query: 84  AVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVW 143
            V+AWG  +E QLG G  E +     PK++  L  + +         S A+  D  ++ W
Sbjct: 95  RVFAWGAGSEGQLGIG--EFKEINFTPKKITTLTGIKIIQVSCGHYHSLALSKDSQVFSW 152

Query: 144 GKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGR 203
           GK+  GQLGLGK+++    P RV +L G  + +V+ G  H+ A +  G  FGWG ++ G+
Sbjct: 153 GKNSHGQLGLGKELSSQASPQRVRSLEGIPVAQVAAGGAHSFALSLCGTSFGWGSNSAGQ 212

Query: 204 IGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEG 263
           +   G+         N+   S     I +                            ++ 
Sbjct: 213 LALSGR---------NVQVQSNKPLSIGA----------------------------LKN 235

Query: 264 VEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLG 297
           + V+ I+CG +H+ VL ++G + + G N  GQLG
Sbjct: 236 LGVIYISCGDEHTAVLSQDGKVFTFGDNSSGQLG 269



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 92/334 (27%), Positives = 137/334 (41%), Gaps = 63/334 (18%)

Query: 48  GVGGDAYEPTRVPGLP-SDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRAT 106
           G G    +  R  G P +++   ++G  H+L +  N +V + G N+  QLGR      A 
Sbjct: 6   GAGSRGLQRRRTEGSPGAELLQAASGERHALLLLTNSSVHSCGENSRGQLGRRG----AP 61

Query: 107 WND-PKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSR 165
             D P+ V+ L  +           S A+   G ++ WG    GQLG+G+       P +
Sbjct: 62  RGDLPEPVQALKTLKFNLVSCGKEHSLAVCHKGRVFAWGAGSEGQLGIGEFKEINFTPKK 121

Query: 166 VEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSE 225
           +  L G KI++VS G  H+LA ++D ++F WG ++ G++G LGK L           S  
Sbjct: 122 ITTLTGIKIIQVSCGHYHSLALSKDSQVFSWGKNSHGQLG-LGKELS----------SQA 170

Query: 226 SDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVL 285
           S Q + S                            +EG+ V  +A G  HS  L   G  
Sbjct: 171 SPQRVRS----------------------------LEGIPVAQVAAGGAHSFALSLCGTS 202

Query: 286 LSCGSNVYGQL---GREKQDMGMFPVDI----NFHPVSISSGLGHSLAICEVRSSNVTGG 338
              GSN  GQL   GR  Q     P+ I    N   + IS G  H         + V   
Sbjct: 203 FGWGSNSAGQLALSGRNVQVQSNKPLSIGALKNLGVIYISCGDEH---------TAVLSQ 253

Query: 339 ARGIVSWGWNRSSQLGRMGPDNV--PLVVEGLEG 370
              + ++G N S QLG         P +VE ++G
Sbjct: 254 DGKVFTFGDNSSGQLGYNPTPKKRGPQIVERIDG 287


>gi|408681155|ref|YP_006880982.1| hypothetical protein SVEN_5437 [Streptomyces venezuelae ATCC 10712]
 gi|328885484|emb|CCA58723.1| hypothetical protein SVEN_5437 [Streptomyces venezuelae ATCC 10712]
          Length = 386

 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 92/297 (30%), Positives = 141/297 (47%), Gaps = 33/297 (11%)

Query: 21  MRSASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVT 80
           ++S  G A    GDGS      P ++TG+ G              V+  +AG   + AV 
Sbjct: 90  VQSWGGNAAGQLGDGSTVGRSFPAAVTGLSG--------------VSKTAAGVNSAYAV- 134

Query: 81  NNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSL 140
             G V AWG N   QLG G   +      P  V+ L++V   AA     +  A+ +DG++
Sbjct: 135 RGGRVLAWGDNTYGQLGNGTAGASP---RPVAVQSLNKVEDIAAGCFHAI--ALREDGTV 189

Query: 141 WVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSA 200
           W WG++  GQLGLG   T+   P RV  L    +V+VS G  H+LA+T DG +  WGY+A
Sbjct: 190 WTWGRNHYGQLGLGT-TTDRNTPQRVPDL--TDVVEVSAGCHHSLARTADGTVKAWGYNA 246

Query: 201 DGRIGNLGKALESSPLD----SNIDRSSESDQEISSSTIEKAQKLV----SEGMEKEKYM 252
            G++GN   A  S+P+D    +++ R   +    S + ++  Q       S G   +   
Sbjct: 247 SGQLGNGSTAHASAPVDVAHLADVSRIFAAGYH-SFAVLDDGQLRAWGWNSAGHLGDGST 305

Query: 253 PIIWEPFLVEGV-EVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPV 308
                P  V G+ +V  +A G++H++ +  +G +L+ G N  GQLG         PV
Sbjct: 306 VSRTTPVPVPGLTDVTALAGGYNHTVAVLADGSVLAWGENTLGQLGDGTTTNSSTPV 362



 Score = 72.4 bits (176), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 96/349 (27%), Positives = 141/349 (40%), Gaps = 81/349 (23%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLP-SDVTSVSAG-----HYHSLAVTNN 82
           V ++G    G LG  T+L         P  V GL  +DV  ++AG        ++A+ N+
Sbjct: 33  VRAWGGNGAGQLGNGTTLA-----QQTPAGVRGLNRADVRHLAAGGDSDTRSFAVALLND 87

Query: 83  GAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWV 142
           G V +WG N   QLG G+   R+    P  V GL  V+  AA   GV S+     G +  
Sbjct: 88  GTVQSWGGNAAGQLGDGSTVGRSF---PAAVTGLSGVSKTAA---GVNSAYAVRGGRVLA 141

Query: 143 WGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADG 202
           WG +  GQLG G   T    P  V   +  K+  ++ G  HA+A  EDG ++ WG +  G
Sbjct: 142 WGDNTYGQLGNG---TAGASPRPVAVQSLNKVEDIAAGCFHAIALREDGTVWTWGRNHYG 198

Query: 203 RIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVE 262
           ++G          L +  DR+          T ++   L                     
Sbjct: 199 QLG----------LGTTTDRN----------TPQRVPDLT-------------------- 218

Query: 263 GVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFHPVSISSGLG 322
             +VV+++ G  HSL    +G + + G N  GQLG         PVD+  H   +S    
Sbjct: 219 --DVVEVSAGCHHSLARTADGTVKAWGYNASGQLGNGSTAHASAPVDV-AHLADVSRIFA 275

Query: 323 ---HSLAICEVRSSNVTGGARGIVSWGWNRSSQLG------RMGPDNVP 362
              HS A+ +            + +WGWN +  LG      R  P  VP
Sbjct: 276 AGYHSFAVLDDGQ---------LRAWGWNSAGHLGDGSTVSRTTPVPVP 315



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 55/159 (34%), Positives = 76/159 (47%), Gaps = 12/159 (7%)

Query: 20  FMRSASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAV 79
             R+A GT V ++G  + G LG      G    A  P  V  L +DV+ + A  YHS AV
Sbjct: 231 LARTADGT-VKAWGYNASGQLG-----NGSTAHASAPVDVAHL-ADVSRIFAAGYHSFAV 283

Query: 80  TNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGS 139
            ++G + AWG N+   LG G+  SR T   P  V GL  V   A   +  V  A+  DGS
Sbjct: 284 LDDGQLRAWGWNSAGHLGDGSTVSRTT---PVPVPGLTDVTALAGGYNHTV--AVLADGS 338

Query: 140 LWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVS 178
           +  WG++  GQLG G     +   + +   +G   V VS
Sbjct: 339 VLAWGENTLGQLGDGTTTNSSTPVTALPPGSGATRVAVS 377


>gi|427797227|gb|JAA64065.1| Putative alpha-tubulin suppressor, partial [Rhipicephalus
           pulchellus]
          Length = 606

 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 61/162 (37%), Positives = 92/162 (56%), Gaps = 5/162 (3%)

Query: 61  GLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVN 120
           GL   V  V+ G +HSLA+T NG V+AWG+NN  Q+G G+  ++ T   P++V       
Sbjct: 200 GLSHRVAQVACGSHHSLALTTNGDVYAWGQNNCGQVGSGSTTNQPT---PRKVSSGIGGR 256

Query: 121 VCAAFASGVVSS-AIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSF 179
            C   A G  SS A+ ++G ++ WG +  GQLGLG ++ +   P RV  L G  I KV  
Sbjct: 257 RCIGVACGQTSSMAVMENGEVFGWGYNGNGQLGLGNNVNQT-SPCRVTNLQGVVIHKVVC 315

Query: 180 GWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNID 221
           G+ H +A +++G L+ WG ++ G++G   KA + SP     D
Sbjct: 316 GYAHTMALSDEGVLYTWGANSYGQLGTGNKANQVSPFKMPTD 357



 Score = 82.8 bits (203), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 75/283 (26%), Positives = 124/283 (43%), Gaps = 74/283 (26%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAY---EPTRVPGLPSD-VTSVSAGH-YHSLAVTNNG 83
           V + G  S G LGL        GD +   EP +V  L    + +++ G   H LAVT +G
Sbjct: 119 VFALGSNSSGCLGL--------GDTHGSLEPRKVDALCRKGIHALAYGSGPHVLAVTESG 170

Query: 84  AVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGD------- 136
            + +WG N   QLG                +GL   ++ A  +  V   A G        
Sbjct: 171 ELLSWGHNGYCQLGNNC-----------NTQGLVPSSISAGLSHRVAQVACGSHHSLALT 219

Query: 137 -DGSLWVWGKSKRGQLGLGKDITEAIVPSRVEA-LAGEKIVKVSFGWGHALAQTEDGKLF 194
            +G ++ WG++  GQ+G G   T    P +V + + G + + V+ G   ++A  E+G++F
Sbjct: 220 TNGDVYAWGQNNCGQVGSGS-TTNQPTPRKVSSGIGGRRCIGVACGQTSSMAVMENGEVF 278

Query: 195 GWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPI 254
           GWGY+ +G++G          L +N++++S            +   L             
Sbjct: 279 GWGYNGNGQLG----------LGNNVNQTSPC----------RVTNL------------- 305

Query: 255 IWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLG 297
                  +GV +  + CG+ H++ L   GVL + G+N YGQLG
Sbjct: 306 -------QGVVIHKVVCGYAHTMALSDEGVLYTWGANSYGQLG 341



 Score = 65.1 bits (157), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 73/285 (25%), Positives = 120/285 (42%), Gaps = 59/285 (20%)

Query: 76  SLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCA-AFASGVVSSAI 134
           +L VT +  V+A G N+   LG G         +P++V+ L +  + A A+ SG    A+
Sbjct: 110 ALMVTQDDDVFALGSNSSGCLGLGDTHGSL---EPRKVDALCRKGIHALAYGSGPHVLAV 166

Query: 135 GDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLF 194
            + G L  WG +   QLG   + T+ +VPS + A    ++ +V+ G  H+LA T +G ++
Sbjct: 167 TESGELLSWGHNGYCQLGNNCN-TQGLVPSSISAGLSHRVAQVACGSHHSLALTTNGDVY 225

Query: 195 GWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPI 254
            WG +  G++G+                         S+T +   + VS G         
Sbjct: 226 AWGQNNCGQVGS------------------------GSTTNQPTPRKVSSG--------- 252

Query: 255 IWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDI-NFH 313
                 + G   + +ACG   S+ +  NG +   G N  GQLG         P  + N  
Sbjct: 253 ------IGGRRCIGVACGQTSSMAVMENGEVFGWGYNGNGQLGLGNNVNQTSPCRVTNLQ 306

Query: 314 PVSIS---SGLGHSLAICEVRSSNVTGGARGIV-SWGWNRSSQLG 354
            V I     G  H++A+ +           G++ +WG N   QLG
Sbjct: 307 GVVIHKVVCGYAHTMALSD----------EGVLYTWGANSYGQLG 341



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 72/257 (28%), Positives = 108/257 (42%), Gaps = 58/257 (22%)

Query: 122 CAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGW 181
           C   +SG  +  +  D  ++  G +  G LGLG D   ++ P +V+AL  + I  +++G 
Sbjct: 101 CVFGSSGNEALMVTQDDDVFALGSNSSGCLGLG-DTHGSLEPRKVDALCRKGIHALAYGS 159

Query: 182 G-HALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQK 240
           G H LA TE G+L  WG++   ++GN                 + + Q +  S+I     
Sbjct: 160 GPHVLAVTESGELLSWGHNGYCQLGN-----------------NCNTQGLVPSSI----- 197

Query: 241 LVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREK 300
             S G+                   V  +ACG  HSL L  NG + + G N  GQ+G   
Sbjct: 198 --SAGLSH----------------RVAQVACGSHHSLALTTNGDVYAWGQNNCGQVGSGS 239

Query: 301 QDMGMFPVDINFHPVSISSGLGHSLAI---CEVRSSNVTGGARGIVSWGWNRSSQLGRMG 357
                 P      P  +SSG+G    I   C   SS        +  WG+N + QLG +G
Sbjct: 240 TTNQ--PT-----PRKVSSGIGGRRCIGVACGQTSSMAVMENGEVFGWGYNGNGQLG-LG 291

Query: 358 PDNV----PLVVEGLEG 370
            +NV    P  V  L+G
Sbjct: 292 -NNVNQTSPCRVTNLQG 307


>gi|89273844|emb|CAJ81935.1| regulator of chromosome condensation (RCC1) and BTB (POZ) domain
           containing protein 2 [Xenopus (Silurana) tropicalis]
          Length = 526

 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 65/197 (32%), Positives = 103/197 (52%), Gaps = 12/197 (6%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPG--LPSDVTSVSAGHYHSLAVTNNGAVW 86
           V S+G  +   LG      G    A  P +V    +     SV+ G +HS+ +T +G V+
Sbjct: 95  VYSWGHNAYSQLG-----NGSTNQALSPCQVSTNLINKKAISVACGSHHSMVLTCDGEVY 149

Query: 87  AWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSS-AIGDDGSLWVWGK 145
           AWG NN  Q+G G   S A    P++V    Q       A G +SS A+ D+G ++ WG 
Sbjct: 150 AWGYNNSGQVGSG---STANQPIPRKVTSCLQNKTVIGIACGQMSSMAVVDNGEVYAWGY 206

Query: 146 SKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIG 205
           +  GQLGLG    +   P R+ AL G ++ +V  G+ H LA T++G ++ WG ++ G++G
Sbjct: 207 NGNGQLGLGSSGNQP-TPCRIAALQGIRVEQVVCGYAHTLALTDEGVMYAWGANSYGQLG 265

Query: 206 NLGKALESSPLDSNIDR 222
              K+ +S P+   +D+
Sbjct: 266 TGNKSNQSYPVQVIVDK 282



 Score = 82.8 bits (203), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 73/290 (25%), Positives = 123/290 (42%), Gaps = 61/290 (21%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLP-SDVTSVSAGH-YHSLAVTNNGAVW 86
           V   G  S G LG     TG      EP R+  L    + S+S G   H + VT++G V+
Sbjct: 42  VFVMGTNSSGCLG-----TGDAQSIIEPRRIDMLSGKRIVSLSYGSGPHVVIVTSDGEVY 96

Query: 87  AWGRNNEVQLGRGALESRATWNDPKRVEGLDQVN------VCAAFASGVVSSAIGDDGSL 140
           +WG N   QLG G+     +   P +V   + +N       C +  S V++     DG +
Sbjct: 97  SWGHNAYSQLGNGSTNQALS---PCQV-STNLINKKAISVACGSHHSMVLTC----DGEV 148

Query: 141 WVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSA 200
           + WG +  GQ+G G    + I       L  + ++ ++ G   ++A  ++G+++ WGY+ 
Sbjct: 149 YAWGYNNSGQVGSGSTANQPIPRKVTSCLQNKTVIGIACGQMSSMAVVDNGEVYAWGYNG 208

Query: 201 DGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFL 260
           +G++G                                   L S G +     P       
Sbjct: 209 NGQLG-----------------------------------LGSSGNQ-----PTPCRIAA 228

Query: 261 VEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDI 310
           ++G+ V  + CG+ H+L L   GV+ + G+N YGQLG   +    +PV +
Sbjct: 229 LQGIRVEQVVCGYAHTLALTDEGVMYAWGANSYGQLGTGNKSNQSYPVQV 278



 Score = 65.1 bits (157), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 66/263 (25%), Positives = 110/263 (41%), Gaps = 53/263 (20%)

Query: 114 EGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEK 173
           E L  +     F +G     +  +  ++V G +  G LG G D    I P R++ L+G++
Sbjct: 16  EDLKFIQQACVFGAGNEVLYLTKNDEVFVMGTNSSGCLGTG-DAQSIIEPRRIDMLSGKR 74

Query: 174 IVKVSFGWG-HALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISS 232
           IV +S+G G H +  T DG+++ WG++A  ++GN       SP             ++S+
Sbjct: 75  IVSLSYGSGPHVVIVTSDGEVYSWGHNAYSQLGNGSTNQALSPC------------QVST 122

Query: 233 STIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNV 292
           + I K                           + + +ACG  HS+VL  +G + + G N 
Sbjct: 123 NLINK---------------------------KAISVACGSHHSMVLTCDGEVYAWGYNN 155

Query: 293 YGQLGREKQDMGMFPVDINFHPVSISSGLGHSLAI---CEVRSSNVTGGARGIVSWGWNR 349
            GQ+G         P+     P  ++S L +   I   C   SS        + +WG+N 
Sbjct: 156 SGQVG--SGSTANQPI-----PRKVTSCLQNKTVIGIACGQMSSMAVVDNGEVYAWGYNG 208

Query: 350 SSQ--LGRMGPDNVPLVVEGLEG 370
           + Q  LG  G    P  +  L+G
Sbjct: 209 NGQLGLGSSGNQPTPCRIAALQG 231


>gi|148234239|ref|NP_001080313.1| regulator of chromosome condensation (RCC1) and BTB (POZ) domain
           containing protein 2 [Xenopus laevis]
 gi|28278605|gb|AAH44119.1| Chc1l-prov protein [Xenopus laevis]
          Length = 526

 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 65/197 (32%), Positives = 103/197 (52%), Gaps = 12/197 (6%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPG--LPSDVTSVSAGHYHSLAVTNNGAVW 86
           V S+G  +   LG      G    A  P +V    +     SV+ G +HS+ +T +G V+
Sbjct: 95  VYSWGHNAYSQLG-----NGSTNQALSPCQVSTNLINKKAHSVACGSHHSMVLTCDGEVY 149

Query: 87  AWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSS-AIGDDGSLWVWGK 145
           AWG NN  Q+G G   S A    P++V    Q       A G +SS A+ D+G ++ WG 
Sbjct: 150 AWGYNNSGQVGSG---STANQPIPRKVTSCLQNKTVIGIACGQMSSMAVVDNGEVYAWGY 206

Query: 146 SKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIG 205
           +  GQLGLG    +   P R+ AL G ++ +V  G+ H LA T++G ++ WG ++ G++G
Sbjct: 207 NGNGQLGLGSSGNQP-TPCRIAALQGIRVEQVVCGYAHTLALTDEGVMYAWGANSYGQLG 265

Query: 206 NLGKALESSPLDSNIDR 222
              K+ +S P+   +D+
Sbjct: 266 TGNKSNQSYPVQVIVDK 282



 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 73/290 (25%), Positives = 123/290 (42%), Gaps = 61/290 (21%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLP-SDVTSVSAGH-YHSLAVTNNGAVW 86
           V   G  S G LG     TG      EP R+  L    + S+S G   H + VT++G V+
Sbjct: 42  VFVMGTNSSGCLG-----TGDAQSIIEPRRIDMLSGKRIVSLSYGSGPHVVIVTSDGEVY 96

Query: 87  AWGRNNEVQLGRGALESRATWNDPKRVEGLDQVN------VCAAFASGVVSSAIGDDGSL 140
           +WG N   QLG G+     +   P +V   + +N       C +  S V++     DG +
Sbjct: 97  SWGHNAYSQLGNGSTNQALS---PCQV-STNLINKKAHSVACGSHHSMVLTC----DGEV 148

Query: 141 WVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSA 200
           + WG +  GQ+G G    + I       L  + ++ ++ G   ++A  ++G+++ WGY+ 
Sbjct: 149 YAWGYNNSGQVGSGSTANQPIPRKVTSCLQNKTVIGIACGQMSSMAVVDNGEVYAWGYNG 208

Query: 201 DGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFL 260
           +G++G                                   L S G +     P       
Sbjct: 209 NGQLG-----------------------------------LGSSGNQ-----PTPCRIAA 228

Query: 261 VEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDI 310
           ++G+ V  + CG+ H+L L   GV+ + G+N YGQLG   +    +PV +
Sbjct: 229 LQGIRVEQVVCGYAHTLALTDEGVMYAWGANSYGQLGTGNKSNQSYPVQV 278


>gi|52345808|ref|NP_001004950.1| regulator of chromosome condensation (RCC1) and BTB (POZ) domain
           containing protein 2 [Xenopus (Silurana) tropicalis]
 gi|49522414|gb|AAH75441.1| MGC89218 protein [Xenopus (Silurana) tropicalis]
          Length = 526

 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 65/197 (32%), Positives = 103/197 (52%), Gaps = 12/197 (6%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPG--LPSDVTSVSAGHYHSLAVTNNGAVW 86
           V S+G  +   LG      G    A  P +V    +     SV+ G +HS+ +T +G V+
Sbjct: 95  VYSWGHNAYSQLG-----NGSTNQALSPCQVSTNLINKKAISVACGSHHSMVLTCDGEVY 149

Query: 87  AWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSS-AIGDDGSLWVWGK 145
           AWG NN  Q+G G   S A    P++V    Q       A G +SS A+ D+G ++ WG 
Sbjct: 150 AWGYNNSGQVGSG---STANQPIPRKVTSCLQNKTVIGIACGQMSSMAVVDNGEVYAWGY 206

Query: 146 SKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIG 205
           +  GQLGLG    +   P R+ AL G ++ +V  G+ H LA T++G ++ WG ++ G++G
Sbjct: 207 NGNGQLGLGSSGNQP-TPCRIAALQGIRVEQVVCGYAHTLALTDEGVMYAWGANSYGQLG 265

Query: 206 NLGKALESSPLDSNIDR 222
              K+ +S P+   +D+
Sbjct: 266 TGNKSNQSYPVQVIVDK 282



 Score = 82.8 bits (203), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 73/290 (25%), Positives = 123/290 (42%), Gaps = 61/290 (21%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLP-SDVTSVSAGH-YHSLAVTNNGAVW 86
           V   G  S G LG     TG      EP R+  L    + S+S G   H + VT++G V+
Sbjct: 42  VFVMGTNSSGCLG-----TGDAQSILEPRRIDMLSGKRIVSLSYGSGPHVVIVTSDGEVY 96

Query: 87  AWGRNNEVQLGRGALESRATWNDPKRVEGLDQVN------VCAAFASGVVSSAIGDDGSL 140
           +WG N   QLG G+     +   P +V   + +N       C +  S V++     DG +
Sbjct: 97  SWGHNAYSQLGNGSTNQALS---PCQV-STNLINKKAISVACGSHHSMVLTC----DGEV 148

Query: 141 WVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSA 200
           + WG +  GQ+G G    + I       L  + ++ ++ G   ++A  ++G+++ WGY+ 
Sbjct: 149 YAWGYNNSGQVGSGSTANQPIPRKVTSCLQNKTVIGIACGQMSSMAVVDNGEVYAWGYNG 208

Query: 201 DGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFL 260
           +G++G                                   L S G +     P       
Sbjct: 209 NGQLG-----------------------------------LGSSGNQ-----PTPCRIAA 228

Query: 261 VEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDI 310
           ++G+ V  + CG+ H+L L   GV+ + G+N YGQLG   +    +PV +
Sbjct: 229 LQGIRVEQVVCGYAHTLALTDEGVMYAWGANSYGQLGTGNKSNQSYPVQV 278



 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 65/263 (24%), Positives = 110/263 (41%), Gaps = 53/263 (20%)

Query: 114 EGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEK 173
           E L  +     F +G     +  +  ++V G +  G LG G D    + P R++ L+G++
Sbjct: 16  EDLKFIQQACVFGAGNEVLYLTKNDEVFVMGTNSSGCLGTG-DAQSILEPRRIDMLSGKR 74

Query: 174 IVKVSFGWG-HALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISS 232
           IV +S+G G H +  T DG+++ WG++A  ++GN       SP             ++S+
Sbjct: 75  IVSLSYGSGPHVVIVTSDGEVYSWGHNAYSQLGNGSTNQALSPC------------QVST 122

Query: 233 STIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNV 292
           + I K                           + + +ACG  HS+VL  +G + + G N 
Sbjct: 123 NLINK---------------------------KAISVACGSHHSMVLTCDGEVYAWGYNN 155

Query: 293 YGQLGREKQDMGMFPVDINFHPVSISSGLGHSLAI---CEVRSSNVTGGARGIVSWGWNR 349
            GQ+G         P+     P  ++S L +   I   C   SS        + +WG+N 
Sbjct: 156 SGQVG--SGSTANQPI-----PRKVTSCLQNKTVIGIACGQMSSMAVVDNGEVYAWGYNG 208

Query: 350 SSQ--LGRMGPDNVPLVVEGLEG 370
           + Q  LG  G    P  +  L+G
Sbjct: 209 NGQLGLGSSGNQPTPCRIAALQG 231


>gi|427795769|gb|JAA63336.1| Putative e3 ubiquitin-protein ligase herc2, partial [Rhipicephalus
           pulchellus]
          Length = 561

 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 61/162 (37%), Positives = 92/162 (56%), Gaps = 5/162 (3%)

Query: 61  GLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVN 120
           GL   V  V+ G +HSLA+T NG V+AWG+NN  Q+G G+  ++ T   P++V       
Sbjct: 155 GLSHRVAQVACGSHHSLALTTNGDVYAWGQNNCGQVGSGSTTNQPT---PRKVSSGIGGR 211

Query: 121 VCAAFASGVVSS-AIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSF 179
            C   A G  SS A+ ++G ++ WG +  GQLGLG ++ +   P RV  L G  I KV  
Sbjct: 212 RCIGVACGQTSSMAVMENGEVFGWGYNGNGQLGLGNNVNQT-SPCRVTNLQGVVIHKVVC 270

Query: 180 GWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNID 221
           G+ H +A +++G L+ WG ++ G++G   KA + SP     D
Sbjct: 271 GYAHTMALSDEGVLYTWGANSYGQLGTGNKANQVSPFKMPTD 312



 Score = 65.9 bits (159), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 45/168 (26%), Positives = 81/168 (48%), Gaps = 42/168 (25%)

Query: 131 SSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEA-LAGEKIVKVSFGWGHALAQTE 189
           S A+  +G ++ WG++  GQ+G G   T    P +V + + G + + V+ G   ++A  E
Sbjct: 170 SLALTTNGDVYAWGQNNCGQVGSGS-TTNQPTPRKVSSGIGGRRCIGVACGQTSSMAVME 228

Query: 190 DGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKE 249
           +G++FGWGY+ +G++G          L +N++++S            +   L        
Sbjct: 229 NGEVFGWGYNGNGQLG----------LGNNVNQTSPC----------RVTNL-------- 260

Query: 250 KYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLG 297
                       +GV +  + CG+ H++ L   GVL + G+N YGQLG
Sbjct: 261 ------------QGVVIHKVVCGYAHTMALSDEGVLYTWGANSYGQLG 296



 Score = 40.8 bits (94), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 64/245 (26%), Positives = 101/245 (41%), Gaps = 41/245 (16%)

Query: 122 CAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGW 181
           C   +SG  +  +  D  ++  G +  G LGLG D   ++ P +V+AL  + I  +++G 
Sbjct: 81  CVFGSSGNEALMVTQDDDVFALGSNSSGCLGLG-DTHGSLEPRKVDALCRKGIHALAYGS 139

Query: 182 G-HALAQTEDGKLFGWGYSADGRIGNLGK-ALESSPLDSNIDRSSESDQEIS-----SST 234
           G H LA TE G+L   G S   R+  +   +  S  L +N D  +            S+T
Sbjct: 140 GPHVLAVTESGELLX-GLSH--RVAQVACGSHHSLALTTNGDVYAWGQNNCGQVGSGSTT 196

Query: 235 IEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYG 294
            +   + VS G               + G   + +ACG   S+ +  NG +   G N  G
Sbjct: 197 NQPTPRKVSSG---------------IGGRRCIGVACGQTSSMAVMENGEVFGWGYNGNG 241

Query: 295 QLGREKQDMGMFPVDI-NFHPVSIS---SGLGHSLAICEVRSSNVTGGARGIV-SWGWNR 349
           QLG         P  + N   V I     G  H++A+ +           G++ +WG N 
Sbjct: 242 QLGLGNNVNQTSPCRVTNLQGVVIHKVVCGYAHTMALSD----------EGVLYTWGANS 291

Query: 350 SSQLG 354
             QLG
Sbjct: 292 YGQLG 296


>gi|356508920|ref|XP_003523201.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC1-like [Glycine
           max]
          Length = 417

 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 112/368 (30%), Positives = 163/368 (44%), Gaps = 54/368 (14%)

Query: 15  LTSRIFMRSASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSD-VTSVSAGH 73
             +R F R A       +G+G  G LGL     G     ++P   P   +  + +++ G 
Sbjct: 20  FPTRSFSRDAGKRFAALWGNGDYGRLGL-----GNLDSQWKPVVCPAFRNKTLNAIACGG 74

Query: 74  YHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQ--VNVCAAFASGVVS 131
            H+L +T +G V+A G N+  QL  G  ES+    +P  V G ++  V + A +     S
Sbjct: 75  AHTLFLTEDGCVYATGLNDFGQL--GVSESKHYSVEPLCVFGEEKKVVQISAGYNH---S 129

Query: 132 SAIGDDGSLWVWGKSKRGQLGLGKDITEAI-VPSRVEALAGEKIVKVSFGWGHALAQTED 190
            AI  DG L++WGK+  GQLGLGK     + +P++VE L G  I   + G  H++A ++ 
Sbjct: 130 CAITVDGELYMWGKNTSGQLGLGKRAPNIVPLPTKVEYLKGINIKMAALGSEHSVAISDG 189

Query: 191 GKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEI-----------------SSS 233
           G  F WG    GR   LG   ESS L      S  + + I                 S+ 
Sbjct: 190 GAAFSWGIGVSGR---LGHGHESSVLGFFKSYSEYTPRLIKDLEGIKVKYVAAGLLNSAC 246

Query: 234 TIEKAQKLV--SEGMEK--EKYMPIIWEPFLV-EGVEVVDIACGFDHSLVLGRNGVLLSC 288
           T E     V    G+EK   K M    +P L+ E     ++ACG  H+ VL  +G L + 
Sbjct: 247 TDENGCVFVFGERGIEKLRLKEMSDATKPSLISELPSSKEVACGGYHTCVLTNSGELYTW 306

Query: 289 GSNVYGQLGREKQDMGMFPVDIN--FHPVS---ISSGLGHSLAICEVRSSNVTGGARGIV 343
           GSN  G LG    D+   P  +   F   S   +S G  H+ AI E R          + 
Sbjct: 307 GSNENGCLGIGSSDVIHLPEKVQGPFLKSSVSQVSCGWKHTAAISEGR----------VF 356

Query: 344 SWGWNRSS 351
           +WGW  S+
Sbjct: 357 TWGWGGSN 364



 Score = 45.8 bits (107), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 43/129 (33%), Positives = 63/129 (48%), Gaps = 19/129 (14%)

Query: 250 KYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLG-REKQDMGMFPV 308
           ++ P++   F  + +    IACG  H+L L  +G + + G N +GQLG  E +   + P+
Sbjct: 53  QWKPVVCPAFRNKTLNA--IACGGAHTLFLTEDGCVYATGLNDFGQLGVSESKHYSVEPL 110

Query: 309 DI---NFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQ--LGRMGPDNVPL 363
            +       V IS+G  HS AI       V G    +  WG N S Q  LG+  P+ VPL
Sbjct: 111 CVFGEEKKVVQISAGYNHSCAI------TVDG---ELYMWGKNTSGQLGLGKRAPNIVPL 161

Query: 364 --VVEGLEG 370
              VE L+G
Sbjct: 162 PTKVEYLKG 170


>gi|242008674|ref|XP_002425127.1| hect E3 ubiquitin ligase, putative [Pediculus humanus corporis]
 gi|212508801|gb|EEB12389.1| hect E3 ubiquitin ligase, putative [Pediculus humanus corporis]
          Length = 1044

 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 75/268 (27%), Positives = 121/268 (45%), Gaps = 51/268 (19%)

Query: 48  GVGGDAYEPTRVP-----GLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALE 102
           G+GG  ++    P        S+V+ V+ G  H++ +T +G V++ G N+  QLG     
Sbjct: 13  GLGGIEHDQIFAPIEHTFKYASNVSQVTMGENHTVMLTKSGEVFSCGNNDLDQLGHKKQR 72

Query: 103 SRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIV 162
           ++     P++VEGLD   +      G  + A  + G L+ WG    GQLG     T   +
Sbjct: 73  TK-----PEKVEGLDFYRITKISCGGNHTLAFNEWGQLFGWGSDSHGQLGFNG--TTQPL 125

Query: 163 PSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDR 222
           P  +++LA   IV++S G  H+LA T +G+L+ WG + DG++G LG              
Sbjct: 126 PKIIKSLATFHIVQISCGKNHSLALTNNGELYSWGGNYDGQLG-LG-------------- 170

Query: 223 SSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRN 282
                     S  EK   L+   +                G+ +  IACG +HS  L ++
Sbjct: 171 --------MRSEYEKQPTLIKSLL----------------GIPIAFIACGSNHSFALSKS 206

Query: 283 GVLLSCGSNVYGQLGREKQDMGMFPVDI 310
           G +   G N YGQLG   ++  + P  +
Sbjct: 207 GAIYGWGKNTYGQLGLNDEENKLHPTQL 234



 Score = 68.6 bits (166), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 76/286 (26%), Positives = 109/286 (38%), Gaps = 69/286 (24%)

Query: 85  VWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDD------- 137
           ++ WG     +LG G +E    +           +     +AS V    +G++       
Sbjct: 1   MYCWGSTVHGELGLGGIEHDQIFA---------PIEHTFKYASNVSQVTMGENHTVMLTK 51

Query: 138 -GSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGW 196
            G ++  G +   QLG  K  T+   P +VE L   +I K+S G  H LA  E G+LFGW
Sbjct: 52  SGEVFSCGNNDLDQLGHKKQRTK---PEKVEGLDFYRITKISCGGNHTLAFNEWGQLFGW 108

Query: 197 GYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIW 256
           G  + G++G  G                         T +   K++              
Sbjct: 109 GSDSHGQLGFNG-------------------------TTQPLPKIIKS------------ 131

Query: 257 EPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFHPVS 316
               +    +V I+CG +HSL L  NG L S G N  GQLG     +GM   +    P  
Sbjct: 132 ----LATFHIVQISCGKNHSLALTNNGELYSWGGNYDGQLG-----LGM-RSEYEKQPTL 181

Query: 317 ISSGLGHSLAI--CEVRSSNVTGGARGIVSWGWNRSSQLGRMGPDN 360
           I S LG  +A   C    S     +  I  WG N   QLG    +N
Sbjct: 182 IKSLLGIPIAFIACGSNHSFALSKSGAIYGWGKNTYGQLGLNDEEN 227



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 40/135 (29%), Positives = 67/135 (49%), Gaps = 9/135 (6%)

Query: 55  EPTRVP---GLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPK 111
           +PT +    G+P  +  ++ G  HS A++ +GA++ WG+N   QLG    E++     P 
Sbjct: 178 QPTLIKSLLGIP--IAFIACGSNHSFALSKSGAIYGWGKNTYGQLGLNDEENKL---HPT 232

Query: 112 RVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAG 171
           +++ L  + V         S+ +  DG ++  G    GQLG G    E I+P ++  L G
Sbjct: 233 QLKTLRSIRVKYIACGEDFSAFLSADGGVFTCGAGMYGQLGHGSTSNE-ILPRKIMELMG 291

Query: 172 EKIVKVSFGWGHALA 186
             + +VS G  H LA
Sbjct: 292 STVTQVSCGKRHTLA 306



 Score = 47.8 bits (112), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 55/239 (23%), Positives = 89/239 (37%), Gaps = 60/239 (25%)

Query: 140 LWVWGKSKRGQLGLG-KDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGY 198
           ++ WG +  G+LGLG  +  +   P          + +V+ G  H +  T+ G++F  G 
Sbjct: 1   MYCWGSTVHGELGLGGIEHDQIFAPIEHTFKYASNVSQVTMGENHTVMLTKSGEVFSCG- 59

Query: 199 SADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEP 258
                             ++++D+     Q      +E                      
Sbjct: 60  ------------------NNDLDQLGHKKQRTKPEKVEG--------------------- 80

Query: 259 FLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDIN----FHP 314
             ++   +  I+CG +H+L     G L   GS+ +GQLG       + P  I     FH 
Sbjct: 81  --LDFYRITKISCGGNHTLAFNEWGQLFGWGSDSHGQLGFNGTTQPL-PKIIKSLATFHI 137

Query: 315 VSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLG---RMGPDNVPLVVEGLEG 370
           V IS G  HSLA+          G   + SWG N   QLG   R   +  P +++ L G
Sbjct: 138 VQISCGKNHSLAL-------TNNGE--LYSWGGNYDGQLGLGMRSEYEKQPTLIKSLLG 187


>gi|296087557|emb|CBI34146.3| unnamed protein product [Vitis vinifera]
          Length = 329

 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 65/196 (33%), Positives = 100/196 (51%), Gaps = 6/196 (3%)

Query: 34  DGSQGALGL-PTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNN 92
           D   G LGL P      GG    P++V  LP  V +VS G + ++ +T  G +W WG N+
Sbjct: 114 DQGDGRLGLGPNCGPNEGGGLSIPSKVKALPVPVAAVSCGGFFTMVLTQEGQLWNWGANS 173

Query: 93  EVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLG 152
             +LGRG  +    W  P+ +  L  V +    + G  S A+ DDG +  WG  + GQLG
Sbjct: 174 NYELGRG--DKVGGWK-PQPIPSLQDVRIIQIASGGYHSLALTDDGKVLSWGYGQHGQLG 230

Query: 153 LGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALE 212
               I    +P+ +EALA E ++ ++ G   + A T++GKL+ WG + D ++G  G   E
Sbjct: 231 -HSSIENQKIPTVIEALADEHVIYIACGGSSSAAITDNGKLYMWGNAKDSQLGVPGLP-E 288

Query: 213 SSPLDSNIDRSSESDQ 228
           + PL   +    E D+
Sbjct: 289 TQPLPVEVKFLMEDDR 304



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 77/289 (26%), Positives = 121/289 (41%), Gaps = 67/289 (23%)

Query: 64  SDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWND------PKRVEGLD 117
           + +  ++    H+ A+T +G ++ WGR+     GR  L      N+      P +V+ L 
Sbjct: 87  AKIRHIATAGTHTAAITESGELYTWGRDQGD--GRLGLGPNCGPNEGGGLSIPSKVKALP 144

Query: 118 QVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKV 177
            V V A    G  +  +  +G LW WG +   +LG G D      P  + +L   +I+++
Sbjct: 145 -VPVAAVSCGGFFTMVLTQEGQLWNWGANSNYELGRG-DKVGGWKPQPIPSLQDVRIIQI 202

Query: 178 SFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEK 237
           + G  H+LA T+DGK+  WGY   G++G+                SS  +Q+I +     
Sbjct: 203 ASGGYHSLALTDDGKVLSWGYGQHGQLGH----------------SSIENQKIPT----- 241

Query: 238 AQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLG 297
               V E +  E                V+ IACG   S  +  NG L   G+    QLG
Sbjct: 242 ----VIEALADE---------------HVIYIACGGSSSAAITDNGKLYMWGNAKDSQLG 282

Query: 298 ----REKQDMGMFPVDINF---------HPVSISSGLGHSLAICEVRSS 333
                E Q +   PV++ F         H V +S  +G S A+C V  S
Sbjct: 283 VPGLPETQPL---PVEVKFLMEDDRLGPHNV-LSVAVGASHAMCLVSRS 327



 Score = 58.2 bits (139), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 71/268 (26%), Positives = 110/268 (41%), Gaps = 61/268 (22%)

Query: 110 PKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSK-RGQLGLGKDITE-----AIVP 163
           P+ VEG     +     +G  ++AI + G L+ WG+ +  G+LGLG +          +P
Sbjct: 78  PRMVEGSWNAKIRHIATAGTHTAAITESGELYTWGRDQGDGRLGLGPNCGPNEGGGLSIP 137

Query: 164 SRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRS 223
           S+V+AL    +  VS G    +  T++G+L+ WG +++  +G   K     P        
Sbjct: 138 SKVKALP-VPVAAVSCGGFFTMVLTQEGQLWNWGANSNYELGRGDKVGGWKP-------- 188

Query: 224 SESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNG 283
               Q I S                            ++ V ++ IA G  HSL L  +G
Sbjct: 189 ----QPIPS----------------------------LQDVRIIQIASGGYHSLALTDDG 216

Query: 284 VLLSCGSNVYGQLGREKQDMGMFPVDI----NFHPVSISSGLGHSLAICEVRSSNVTGGA 339
            +LS G   +GQLG    +    P  I    + H + I+ G   S AI +          
Sbjct: 217 KVLSWGYGQHGQLGHSSIENQKIPTVIEALADEHVIYIACGGSSSAAITDNGK------- 269

Query: 340 RGIVSWGWNRSSQLGRMG-PDNVPLVVE 366
             +  WG  + SQLG  G P+  PL VE
Sbjct: 270 --LYMWGNAKDSQLGVPGLPETQPLPVE 295


>gi|293344078|ref|XP_001080802.2| PREDICTED: secretion-regulating guanine nucleotide exchange factor
           [Rattus norvegicus]
 gi|293355949|ref|XP_344892.4| PREDICTED: secretion-regulating guanine nucleotide exchange factor
           [Rattus norvegicus]
 gi|149055831|gb|EDM07262.1| similar to Gnefr protein (predicted), isoform CRA_a [Rattus
           norvegicus]
          Length = 450

 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 96/313 (30%), Positives = 142/313 (45%), Gaps = 42/313 (13%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAW 88
           V+S G  + G LG+P            P  +  L   V  V+AG  H+LA T+ G+ + W
Sbjct: 122 VLSCGSNAFGQLGVPHGPR----KCVVPQAIECLREKVVCVAAGLRHALATTDTGSTFQW 177

Query: 89  GR---NNEVQLGRGA-LESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWG 144
           G    ++  +L  G  L    T  +P RV GL+   V  A A    S+++ D G L+VWG
Sbjct: 178 GTGLASSGRRLCPGQNLPLFLTAKEPSRVTGLESSTVVCAVAGSDHSASLTDTGELYVWG 237

Query: 145 KSKRGQLGLGKDITEAIVPSRVEA--LAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADG 202
           ++K GQ  L    T   +P RVEA     EK+  V  GW H +A+TE GK+F WG  AD 
Sbjct: 238 RNKHGQ--LASLATFLPLPQRVEAHYFQDEKVTAVWSGWTHLVAKTETGKVFTWG-RAD- 293

Query: 203 RIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVE 262
             G LG+ L S        +  E D   SS   ++ Q  V   +              + 
Sbjct: 294 -YGQLGRTLGS----PEAQKHGEQD---SSLAFQRLQNSVPSPLH------------CLT 333

Query: 263 GVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFHP-----VSI 317
           G    +++CG +H+L + R+    S G N +G  G   +     P  +   P     + +
Sbjct: 334 G--AAEVSCGSEHNLAVIRDKC-CSWGWNEHGMCGDGTESNVWTPTPVQALPSPSRLLLV 390

Query: 318 SSGLGHSLAICEV 330
             G GHSLA+C++
Sbjct: 391 GCGAGHSLALCQL 403



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 99/391 (25%), Positives = 152/391 (38%), Gaps = 69/391 (17%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSD--VTSVSAGHYHSLAVTNNGAVW 86
           + ++G  S G LGL     G   D   P ++        + SV+ G  HS+ VT+ G ++
Sbjct: 17  LFAWGANSYGQLGL-----GHKEDVLLPQQLSDFCKSGCIKSVTGGGGHSVVVTDGGGLF 71

Query: 87  AWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKS 146
             G N + QLG G  E    +   K + G     V   +   ++   + + G +   G +
Sbjct: 72  VCGLNKDGQLGLGHTEEVLRFTICKPLLGCPIRQVACGWDFTIM---LTEKGQVLSCGSN 128

Query: 147 KRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGW--GYSADGRI 204
             GQLG+     + +VP  +E L  EK+V V+ G  HALA T+ G  F W  G ++ GR 
Sbjct: 129 AFGQLGVPHGPRKCVVPQAIECLR-EKVVCVAAGLRHALATTDTGSTFQWGTGLASSGRR 187

Query: 205 GNLGKALESSPLDSNIDRSS-----ESDQEIS-------SSTIEKAQKLVSEGMEKE--- 249
              G+ L   PL       S     ES   +        S+++    +L   G  K    
Sbjct: 188 LCPGQNL---PLFLTAKEPSRVTGLESSTVVCAVAGSDHSASLTDTGELYVWGRNKHGQL 244

Query: 250 ----KYMPIIW--EPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGR----- 298
                ++P+    E    +  +V  +  G+ H +     G + + G   YGQLGR     
Sbjct: 245 ASLATFLPLPQRVEAHYFQDEKVTAVWSGWTHLVAKTETGKVFTWGRADYGQLGRTLGSP 304

Query: 299 EKQDMGMFPVDINFHPVS---------------ISSGLGHSLAICEVRSSNVTGGARGIV 343
           E Q  G     + F  +                +S G  H+LA+  +R            
Sbjct: 305 EAQKHGEQDSSLAFQRLQNSVPSPLHCLTGAAEVSCGSEHNLAV--IRDK--------CC 354

Query: 344 SWGWNRSSQLGRMGPDNV--PLVVEGLEGES 372
           SWGWN     G     NV  P  V+ L   S
Sbjct: 355 SWGWNEHGMCGDGTESNVWTPTPVQALPSPS 385


>gi|344284964|ref|XP_003414234.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC6 [Loxodonta
           africana]
          Length = 1018

 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 93/312 (29%), Positives = 143/312 (45%), Gaps = 52/312 (16%)

Query: 64  SDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCA 123
           +++   ++G  HSL + ++G V A G N+  QLGR  +  R     P  ++ L+ +NV  
Sbjct: 21  AELRQAASGERHSLLLLSDGTVHACGDNSCGQLGRRGVPHRKR---PGLIQALETLNVDL 77

Query: 124 AFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGH 183
                  S A+   G ++ WG    GQLG+G+       P +V+ALAG KI++VS G  H
Sbjct: 78  LSCGKEHSLAVCHKGRVFAWGAGSEGQLGIGEFKELNFTPMKVKALAGIKIIQVSCGHYH 137

Query: 184 ALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVS 243
           +LA ++DG++F WG ++ G++G LGK             S ES Q + S           
Sbjct: 138 SLALSQDGQVFSWGNNSHGQLG-LGKEF----------LSQESPQRVKS----------- 175

Query: 244 EGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDM 303
                            +EG+ +  +A G  HS  L  +G     GSN  GQL     ++
Sbjct: 176 -----------------LEGIPLAQVAAGGAHSFALSLSGTSFGWGSNNAGQLALSGNNV 218

Query: 304 GMFPVDINFHPVSISS--GLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPDNV 361
              PV  ++ P SI +   LG     C    + V      + ++G N S QLG  GP   
Sbjct: 219 ---PVQ-SYKPRSIGALKELGVVYISCGSEHTAVLTQDGKVFTFGDNSSGQLGH-GPTAE 273

Query: 362 ---PLVVEGLEG 370
              P +VEG++G
Sbjct: 274 KRGPQLVEGIDG 285


>gi|386724712|ref|YP_006191038.1| hypothetical protein B2K_21665 [Paenibacillus mucilaginosus K02]
 gi|384091837|gb|AFH63273.1| hypothetical protein B2K_21665 [Paenibacillus mucilaginosus K02]
          Length = 338

 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 91/259 (35%), Positives = 127/259 (49%), Gaps = 28/259 (10%)

Query: 52  DAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPK 111
           D   P +V GL S V ++ AG  HSLAV  +G+VWAWG N   QLG G  +SR+T   P 
Sbjct: 69  DRLTPVQVQGLHS-VVALEAGSSHSLAVKADGSVWAWGWNTYGQLGDGTTDSRST---PV 124

Query: 112 RVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAG 171
           +VEGLD V V  A  SG  S A+  DGS+W WG +  GQLG G   TE+ VP +V  L  
Sbjct: 125 QVEGLDSV-VAVAAGSG-HSLAVKADGSVWAWGANWSGQLGDGT-YTESTVPVQVTGLG- 180

Query: 172 EKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALES-SPLD------------- 217
             +V VS G   + A   DG ++ WG +  G++G+   A  S SP+              
Sbjct: 181 -SVVSVSAGNTFSSALKSDGTVWAWGANDSGQLGSETAASNSPSPVQVTGMASAAAISSG 239

Query: 218 SNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSL 277
           S+   + ++D  + +     + +L   G       P+     +     VV +A G  H L
Sbjct: 240 SDYSLALKNDGTVWAWGYNSSGQL-GNGTTTSSSAPVQ----VTRLGSVVSVAAGPLHGL 294

Query: 278 VLGRNGVLLSCGSNVYGQL 296
            +   G +   G+N YGQL
Sbjct: 295 AVQSGGTVWDWGNNTYGQL 313



 Score = 94.4 bits (233), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 92/292 (31%), Positives = 135/292 (46%), Gaps = 30/292 (10%)

Query: 52  DAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPK 111
           D Y P  V  L S V  +SAG   S AV ++G  WAWG N   QLG G    R T   P 
Sbjct: 19  DRYSPIPVKNLDS-VIGISAGGAASFAVRSDGTAWAWGSNLFGQLGDGTTYDRLT---PV 74

Query: 112 RVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAG 171
           +V+GL  V    A +S   S A+  DGS+W WG +  GQLG G   + +  P +VE L  
Sbjct: 75  QVQGLHSVVALEAGSSH--SLAVKADGSVWAWGWNTYGQLGDGTTDSRS-TPVQVEGL-- 129

Query: 172 EKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLD-------------S 218
           + +V V+ G GH+LA   DG ++ WG +  G++G+      + P+              +
Sbjct: 130 DSVVAVAAGSGHSLAVKADGSVWAWGANWSGQLGDGTYTESTVPVQVTGLGSVVSVSAGN 189

Query: 219 NIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGV-EVVDIACGFDHSL 277
               + +SD  + +     + +L SE        P+      V G+     I+ G D+SL
Sbjct: 190 TFSSALKSDGTVWAWGANDSGQLGSETAASNSPSPV-----QVTGMASAAAISSGSDYSL 244

Query: 278 VLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINF--HPVSISSGLGHSLAI 327
            L  +G + + G N  GQLG         PV +      VS+++G  H LA+
Sbjct: 245 ALKNDGTVWAWGYNSSGQLGNGTTTSSSAPVQVTRLGSVVSVAAGPLHGLAV 296



 Score = 80.9 bits (198), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 81/285 (28%), Positives = 120/285 (42%), Gaps = 62/285 (21%)

Query: 85  VWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWG 144
           +WAWG N+  QLG G    R +   P  V+ LD  +V    A G  S A+  DG+ W WG
Sbjct: 1   MWAWGANSNAQLGDGTKTDRYS---PIPVKNLD--SVIGISAGGAASFAVRSDGTAWAWG 55

Query: 145 KSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRI 204
            +  GQLG G    + + P +V+ L    +V +  G  H+LA   DG ++ WG++  G++
Sbjct: 56  SNLFGQLGDGTTY-DRLTPVQVQGL--HSVVALEAGSSHSLAVKADGSVWAWGWNTYGQL 112

Query: 205 GNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGV 264
           G           D   D  S                                 P  VEG+
Sbjct: 113 G-----------DGTTDSRS--------------------------------TPVQVEGL 129

Query: 265 E-VVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFHPVSISSGLGH 323
           + VV +A G  HSL +  +G + + G+N  GQLG         PV +        +GLG 
Sbjct: 130 DSVVAVAAGSGHSLAVKADGSVWAWGANWSGQLGDGTYTESTVPVQV--------TGLGS 181

Query: 324 SLAICEVRSSNVTGGARGIV-SWGWNRSSQLG-RMGPDNVPLVVE 366
            +++    + +    + G V +WG N S QLG      N P  V+
Sbjct: 182 VVSVSAGNTFSSALKSDGTVWAWGANDSGQLGSETAASNSPSPVQ 226



 Score = 68.6 bits (166), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 67/197 (34%), Positives = 99/197 (50%), Gaps = 11/197 (5%)

Query: 11  HVNVLTSRIFMRSASGTAVVSFGDGSQGALGLPTSLT---GVGGDAYEPTRVPGLPSDVT 67
            V  L S + + + SG ++    DGS  A G   S     G   ++  P +V GL S V 
Sbjct: 125 QVEGLDSVVAVAAGSGHSLAVKADGSVWAWGANWSGQLGDGTYTESTVPVQVTGLGS-VV 183

Query: 68  SVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFAS 127
           SVSAG+  S A+ ++G VWAWG N+  QLG    E+ A+ N P  V+     +  A  + 
Sbjct: 184 SVSAGNTFSSALKSDGTVWAWGANDSGQLGS---ETAAS-NSPSPVQVTGMASAAAISSG 239

Query: 128 GVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQ 187
              S A+ +DG++W WG +  GQLG G   T +  P +V  L    +V V+ G  H LA 
Sbjct: 240 SDYSLALKNDGTVWAWGYNSSGQLGNGT-TTSSSAPVQVTRLG--SVVSVAAGPLHGLAV 296

Query: 188 TEDGKLFGWGYSADGRI 204
              G ++ WG +  G++
Sbjct: 297 QSGGTVWDWGNNTYGQL 313


>gi|387193358|gb|AFJ68699.1| hypothetical protein NGATSA_3056200, partial [Nannochloropsis
           gaditana CCMP526]
          Length = 511

 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 77/258 (29%), Positives = 126/258 (48%), Gaps = 27/258 (10%)

Query: 25  SGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPS-DVTSVSAGHYHSLAVTNNG 83
           +G  V  +GD   G  G+  +        Y P ++  L    +T ++A  +H+ A+T +G
Sbjct: 160 AGGEVYCWGDRENGVCGIGEAAE----HQYLPKKLEALKGVKITQIAACGFHTAAITQDG 215

Query: 84  AVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVW 143
           A+W+WG     +LG+G  +++ T   P  VEGL  V V      G  S+ + +DG +  +
Sbjct: 216 ALWSWGEGKFGRLGQGNEKNQVT---PCCVEGLQGVRVKQVACGGFHSACVTEDGDVLTF 272

Query: 144 GKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGR 203
           G  + GQLG G D T   VP  V+AL G  IV+V+ GW H +  +EDGK+F +G    G+
Sbjct: 273 GGGEHGQLGHG-DKTNRTVPCLVKALEGAGIVQVTCGWSHTVTLSEDGKVFTFGNGDHGK 331

Query: 204 IGN-------LGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKE------- 249
           +G+       L K +ES         +S ++  ++    E+ Q ++S    K+       
Sbjct: 332 LGHGANAKSALPKLVESLANMKVAKVASYNEHTVALCHAEQEQAVMSFDFLKDLRRLINN 391

Query: 250 -KYMPIIWEPFLVEGVEV 266
             +  ++   FLVEG  V
Sbjct: 392 ADFADVV---FLVEGQRV 406



 Score = 90.9 bits (224), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 90/357 (25%), Positives = 152/357 (42%), Gaps = 34/357 (9%)

Query: 22  RSASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPS-DVTSVSAGHYHSLAVT 80
           +S   + + S+G G  G  G      G   D   P  V GL    V  ++ G  H++ +T
Sbjct: 1   QSRHDSMLYSWGRGEDGQCG-----NGSTNDQEMPMPVEGLKHLTVVQIACGSGHTVVLT 55

Query: 81  NNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSL 140
            +  VW+WGR ++ +LG      +     P  V  L   ++         ++AI D G+L
Sbjct: 56  EDKDVWSWGRGDDGRLGHADNHWKYV---PHLVSALTGKSIKQVTCGSYHTAAISDTGAL 112

Query: 141 WVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSA 200
           W WG    G+LG G ++     P RVEA  G ++ +++ G  H  A    G+++ WG   
Sbjct: 113 WTWGGGMYGKLGHGNEVGHP-APCRVEAFIGREVEQIACGSRHTAALLAGGEVYCWGDRE 171

Query: 201 DGRIGNLGKALESSPLDSNIDR------SSESDQEISSSTIEKAQKL----------VSE 244
           +G  G +G+A E   L   ++       +  +     ++ I +   L          + +
Sbjct: 172 NGVCG-IGEAAEHQYLPKKLEALKGVKITQIAACGFHTAAITQDGALWSWGEGKFGRLGQ 230

Query: 245 GMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMG 304
           G EK +  P   E   ++GV V  +ACG  HS  +  +G +L+ G   +GQLG   +   
Sbjct: 231 GNEKNQVTPCCVEG--LQGVRVKQVACGGFHSACVTEDGDVLTFGGGEHGQLGHGDKTNR 288

Query: 305 MFPVDINFHP----VSISSGLGHSLAICEVRSSNVTG-GARGIVSWGWNRSSQLGRM 356
             P  +        V ++ G  H++ + E       G G  G +  G N  S L ++
Sbjct: 289 TVPCLVKALEGAGIVQVTCGWSHTVTLSEDGKVFTFGNGDHGKLGHGANAKSALPKL 345



 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 72/300 (24%), Positives = 127/300 (42%), Gaps = 24/300 (8%)

Query: 54  YEPTRVPGLP-SDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKR 112
           Y P  V  L    +  V+ G YH+ A+++ GA+W WG     +LG G   +      P R
Sbjct: 80  YVPHLVSALTGKSIKQVTCGSYHTAAISDTGALWTWGGGMYGKLGHG---NEVGHPAPCR 136

Query: 113 VEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGE 172
           VE      V         ++A+   G ++ WG  + G  G+G+      +P ++EAL G 
Sbjct: 137 VEAFIGREVEQIACGSRHTAALLAGGEVYCWGDRENGVCGIGEAAEHQYLPKKLEALKGV 196

Query: 173 KIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEI-- 230
           KI +++    H  A T+DG L+ WG    GR+G   +  + +P      +     Q    
Sbjct: 197 KITQIAACGFHTAAITQDGALWSWGEGKFGRLGQGNEKNQVTPCCVEGLQGVRVKQVACG 256

Query: 231 ---SSSTIEKAQKL---------VSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLV 278
              S+   E    L         +  G +  + +P + +   +EG  +V + CG+ H++ 
Sbjct: 257 GFHSACVTEDGDVLTFGGGEHGQLGHGDKTNRTVPCLVKA--LEGAGIVQVTCGWSHTVT 314

Query: 279 LGRNGVLLSCGSNVYGQLGREKQDMGMFPVDI----NFHPVSISSGLGHSLAICEVRSSN 334
           L  +G + + G+  +G+LG         P  +    N     ++S   H++A+C      
Sbjct: 315 LSEDGKVFTFGNGDHGKLGHGANAKSALPKLVESLANMKVAKVASYNEHTVALCHAEQEQ 374


>gi|225464728|ref|XP_002264236.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC2-like [Vitis
           vinifera]
          Length = 489

 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 65/196 (33%), Positives = 100/196 (51%), Gaps = 6/196 (3%)

Query: 34  DGSQGALGL-PTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNN 92
           D   G LGL P      GG    P++V  LP  V +VS G + ++ +T  G +W WG N+
Sbjct: 219 DQGDGRLGLGPNCGPNEGGGLSIPSKVKALPVPVAAVSCGGFFTMVLTQEGQLWNWGANS 278

Query: 93  EVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLG 152
             +LGRG  +    W  P+ +  L  V +    + G  S A+ DDG +  WG  + GQLG
Sbjct: 279 NYELGRG--DKVGGWK-PQPIPSLQDVRIIQIASGGYHSLALTDDGKVLSWGYGQHGQLG 335

Query: 153 LGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALE 212
               I    +P+ +EALA E ++ ++ G   + A T++GKL+ WG + D ++G  G   E
Sbjct: 336 -HSSIENQKIPTVIEALADEHVIYIACGGSSSAAITDNGKLYMWGNAKDSQLGVPGLP-E 393

Query: 213 SSPLDSNIDRSSESDQ 228
           + PL   +    E D+
Sbjct: 394 TQPLPVEVKFLMEDDR 409



 Score = 75.1 bits (183), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 94/346 (27%), Positives = 142/346 (41%), Gaps = 70/346 (20%)

Query: 32  FGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRN 91
           +G G  G LG      G    A+ PT  P L S + S + G  HS+A+++ G V+ WG  
Sbjct: 114 WGKGDGGRLGF-----GQEYPAFLPTLNPNLDS-IRSTALGGVHSVALSSLGQVFTWGYG 167

Query: 92  NEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSK-RGQ 150
               LG            P+ VEG     +     +G  ++AI + G L+ WG+ +  G+
Sbjct: 168 GFGALGHSVYHRELL---PRMVEGSWNAKIRHIATAGTHTAAITESGELYTWGRDQGDGR 224

Query: 151 LGLGKDITE-----AIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIG 205
           LGLG +          +PS+V+AL    +  VS G    +  T++G+L+ WG +++  +G
Sbjct: 225 LGLGPNCGPNEGGGLSIPSKVKALP-VPVAAVSCGGFFTMVLTQEGQLWNWGANSNYELG 283

Query: 206 NLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVE 265
              K     P            Q I S                            ++ V 
Sbjct: 284 RGDKVGGWKP------------QPIPS----------------------------LQDVR 303

Query: 266 VVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDI----NFHPVSISSGL 321
           ++ IA G  HSL L  +G +LS G   +GQLG    +    P  I    + H + I+ G 
Sbjct: 304 IIQIASGGYHSLALTDDGKVLSWGYGQHGQLGHSSIENQKIPTVIEALADEHVIYIACGG 363

Query: 322 GHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMG-PDNVPLVVE 366
             S AI +            +  WG  + SQLG  G P+  PL VE
Sbjct: 364 SSSAAITDNGK---------LYMWGNAKDSQLGVPGLPETQPLPVE 400



 Score = 69.7 bits (169), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 88/310 (28%), Positives = 129/310 (41%), Gaps = 58/310 (18%)

Query: 69  VSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASG 128
           +S G +HS  V + G +W WG+ +  +LG G  E  A    P     LD +   A    G
Sbjct: 96  ISCGLFHSSLVVD-GKLWIWGKGDGGRLGFGQ-EYPAFL--PTLNPNLDSIRSTAL--GG 149

Query: 129 VVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQT 188
           V S A+   G ++ WG    G LG      E ++P  VE     KI  ++    H  A T
Sbjct: 150 VHSVALSSLGQVFTWGYGGFGALGHSVYHRE-LLPRMVEGSWNAKIRHIATAGTHTAAIT 208

Query: 189 EDGKLFGWGY-SADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGME 247
           E G+L+ WG    DGR+G          L  N   +      I S               
Sbjct: 209 ESGELYTWGRDQGDGRLG----------LGPNCGPNEGGGLSIPS--------------- 243

Query: 248 KEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFP 307
           K K +P          V V  ++CG   ++VL + G L + G+N   +LGR  +  G  P
Sbjct: 244 KVKALP----------VPVAAVSCGGFFTMVLTQEGQLWNWGANSNYELGRGDKVGGWKP 293

Query: 308 VDI----NFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPDN--V 361
             I    +   + I+SG  HSLA+ +            ++SWG+ +  QLG    +N  +
Sbjct: 294 QPIPSLQDVRIIQIASGGYHSLALTDDGK---------VLSWGYGQHGQLGHSSIENQKI 344

Query: 362 PLVVEGLEGE 371
           P V+E L  E
Sbjct: 345 PTVIEALADE 354


>gi|42563438|ref|NP_186900.3| regulator of chromosome condensation domain-containing protein
           [Arabidopsis thaliana]
 gi|110735845|dbj|BAE99899.1| hypothetical protein [Arabidopsis thaliana]
 gi|332640299|gb|AEE73820.1| regulator of chromosome condensation domain-containing protein
           [Arabidopsis thaliana]
          Length = 393

 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 62/166 (37%), Positives = 94/166 (56%), Gaps = 5/166 (3%)

Query: 56  PTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEG 115
           P RV GL  +V  ++ G +H+LA+  +G + AWG N   QLG G  +  +    P  V+G
Sbjct: 189 PVRVQGL-ENVRLIAVGAFHNLALEEDGRLLAWGNNEYGQLGTGDTQPTS---HPVPVQG 244

Query: 116 LDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLG-KDITEAIVPSRVEALAGEKI 174
           LD + +    A G  S+A+ D G ++ WG+ + G+LGLG  D +  +VP +V  LA E I
Sbjct: 245 LDDLTLVDIAAGGWHSTALTDKGEVYGWGRGEHGRLGLGDNDKSSKMVPQKVNLLAEEDI 304

Query: 175 VKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNI 220
           ++VS G  H++A T DG++F +G    GR+G   K     PL+  I
Sbjct: 305 IQVSCGGTHSVALTRDGRIFSFGRGDHGRLGYGRKVTTGQPLELPI 350



 Score = 88.6 bits (218), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 92/305 (30%), Positives = 136/305 (44%), Gaps = 37/305 (12%)

Query: 87  AWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKS 146
           AWG   + QLG G  E +  W     VE L+  +V +  +    S AI DDG+++ WG +
Sbjct: 9   AWGSGEDGQLGIGTNEEKE-W--ACVVEALEPYSVRSVVSGSRNSLAICDDGTMFTWGWN 65

Query: 147 KRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGN 206
           +RG LG   +     +PSRV+ALA  KI + + G  H LA  + G+ + WG +  G+ G 
Sbjct: 66  QRGTLGHQPETKTENIPSRVKALANVKITQAAIGGWHCLAVDDQGRAYAWGGNEYGQCG- 124

Query: 207 LGKALESSPLDSNIDRSSESDQEISSSTIEKAQ-KLVSEG------MEKEKY-------- 251
                   PL   + R    D  I      K   + V+ G      + +E +        
Sbjct: 125 ------EEPLKDEMGRPVRRDIVIPKRCAPKLTVRQVAAGGTHSVVLTREGHVWTWGQPW 178

Query: 252 ----MPIIWEPFLVEGVEVVD-IACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMF 306
               +  I  P  V+G+E V  IA G  H+L L  +G LL+ G+N YGQLG         
Sbjct: 179 PPGDIKQISVPVRVQGLENVRLIAVGAFHNLALEEDGRLLAWGNNEYGQLGTGDTQPTSH 238

Query: 307 PVDI----NFHPVSISSGLGHSLAICEVRSSNVTGGARGIV-SWGWNRSSQLGRMGPDNV 361
           PV +    +   V I++G  HS A+ +     V G  RG     G   + +  +M P  V
Sbjct: 239 PVPVQGLDDLTLVDIAAGGWHSTALTD--KGEVYGWGRGEHGRLGLGDNDKSSKMVPQKV 296

Query: 362 PLVVE 366
            L+ E
Sbjct: 297 NLLAE 301



 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 77/290 (26%), Positives = 128/290 (44%), Gaps = 68/290 (23%)

Query: 66  VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAF 125
           V  V+AG  HS+ +T  G VW WG+        G ++  +    P RV+GL+ V + A  
Sbjct: 152 VRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISV---PVRVQGLENVRLIAVG 204

Query: 126 ASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHAL 185
           A    + A+ +DG L  WG ++ GQLG G D      P  V+ L    +V ++ G  H+ 
Sbjct: 205 A--FHNLALEEDGRLLAWGNNEYGQLGTG-DTQPTSHPVPVQGLDDLTLVDIAAGGWHST 261

Query: 186 AQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEG 245
           A T+ G+++GWG    GR+G LG                  D + SS  + +   L++E 
Sbjct: 262 ALTDKGEVYGWGRGEHGRLG-LG------------------DNDKSSKMVPQKVNLLAE- 301

Query: 246 MEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGM 305
                              +++ ++CG  HS+ L R+G + S G   +G+LG  ++    
Sbjct: 302 ------------------EDIIQVSCGGTHSVALTRDGRIFSFGRGDHGRLGYGRKVTTG 343

Query: 306 FPVDI--------------------NFHPVSISSGLGHSLAICEVRSSNV 335
            P+++                     +   SI+ G  H+LAI E +S ++
Sbjct: 344 QPLELPIKIPPPEGSFNHTDEEEEGKWSAKSIACGGRHTLAIVEWKSDDI 393


>gi|195432783|ref|XP_002064396.1| GK20144 [Drosophila willistoni]
 gi|194160481|gb|EDW75382.1| GK20144 [Drosophila willistoni]
          Length = 4996

 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 103/357 (28%), Positives = 156/357 (43%), Gaps = 76/357 (21%)

Query: 11   HVNVLTSRIFMRSASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVT--- 67
            H++  +  +F+ S  G  V + G+G+ G LGL     GV  +   P ++P L   V    
Sbjct: 3064 HISGGSKSLFIVSQDGK-VFACGEGTNGRLGL-----GVTHNVPLPHQLPVLHQYVVKKV 3117

Query: 68   SVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFAS 127
            +V +G  H+LA+T +G V++WG   + +LG G   +R T + P+ VE L    +      
Sbjct: 3118 AVHSGGKHALALTLDGKVFSWGEGEDGKLGHG---NRTTLDKPRLVEALRAKKIRDVACG 3174

Query: 128  GVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGW--GHAL 185
               S+AI   G L+ WG  + G+LG G + T+ + P +V ALAG ++++V+ G      L
Sbjct: 3175 SSHSAAISSQGELYTWGLGEYGRLGHGDNATQ-LKPKQVTALAGRRVIQVACGSRDAQTL 3233

Query: 186  AQTEDGKLFGWGYSADGRIGNLGK-ALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSE 244
            A TEDG +F WG   DG  G LG+   E S     I+R S                    
Sbjct: 3234 ALTEDGAVFSWG---DGDFGKLGRGGSEGSATPHEIERLS-------------------- 3270

Query: 245  GMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLG------- 297
                              G+ V+ I CG   SL L R G + + G   Y +LG       
Sbjct: 3271 ------------------GIGVIQIECGAQFSLALTRAGEVWTWGKGDYYRLGHGGDQHV 3312

Query: 298  REKQDMGMFPVDINFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLG 354
            R+ Q +G        H   ++ G  H LA+ +         A  + +WG N   Q G
Sbjct: 3313 RKPQPIGGLRGRRVIH---VAVGALHCLAVTD---------AGQVYAWGDNDHGQQG 3357



 Score = 81.6 bits (200), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 84/315 (26%), Positives = 138/315 (43%), Gaps = 67/315 (21%)

Query: 68   SVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFAS 127
            +V++G  H LA+T  G V+AWG   + +LG G   +R +++ PK VE L+ ++V      
Sbjct: 4237 AVNSGGKHCLALTTEGEVYAWGEGEDGKLGHG---NRMSYDRPKLVEHLNGMSVADIACG 4293

Query: 128  GVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHA--L 185
               S+AI   G +  WGK + G+LG G D  + + P  VEAL G + + ++ G G A  L
Sbjct: 4294 SAHSAAITSSGHVLTWGKGRYGRLGHG-DSEDQLRPKLVEALLGYRAIDIACGSGDAQTL 4352

Query: 186  AQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEG 245
              T+D  ++ WG   DG  G LG+                                 S+G
Sbjct: 4353 CITDDDNVWSWG---DGDYGKLGRG-------------------------------GSDG 4378

Query: 246  MEKEKYMPIIWEPFLVE---GVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQD 302
             +          P+ +E   G+ V+ + CG   S+ L ++G + + G   + +LG    D
Sbjct: 4379 CKL---------PYKIESLAGLGVIKVECGSQFSVALTKSGAVYTWGKGDFHRLGHGSVD 4429

Query: 303  MGMFPVDINF----HPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQL--GRM 356
                P  +        +SI++G  H +A  +         A  + +WG N   QL  G +
Sbjct: 4430 HVRRPKKVAALQGKKIISIATGSLHCVACSD---------AGEVYTWGDNDEGQLGDGTV 4480

Query: 357  GPDNVPLVVEGLEGE 371
                 P +V  L+G+
Sbjct: 4481 TAIQRPRLVAALQGK 4495



 Score = 79.0 bits (193), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 92/340 (27%), Positives = 148/340 (43%), Gaps = 48/340 (14%)

Query: 49  VGGDAYEPTRVPGLPSDVTSVSAGHY---HSLAVTNNGAVWAWGRNNEVQLGRGALESRA 105
           +G    EP  +  L  +     AGH    H LA+ +N   ++WG   + +LG G   +RA
Sbjct: 597 LGKPELEPQPIEELAQETILSIAGHCEGRHFLAIDSNRNAYSWGAGEDHRLGHGDTHARA 656

Query: 106 TWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSR 165
               P ++  LD+  V A F     S+AI   G+L+ WG+   G+LG G    +  VP+ 
Sbjct: 657 V---PTKISALDRC-VKAVFCGCSYSAAITWSGNLYTWGRGTYGRLGHGNS-DDQCVPAI 711

Query: 166 VEALAGEKIVKVSFGWG--HALAQTEDGKLFGWGYSADGRIGN------LGKAL-ESSPL 216
           V ALA  +I+ V+ G G  H+L  T +G ++ WG    G++GN      L   L E+ P 
Sbjct: 712 VMALAEYEIIDVALGSGDAHSLCLTSEGLVYAWGDGDYGKLGNGNCNSSLQPILVETLPR 771

Query: 217 DSNIDRSSESDQEISSS----TIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVE---VVDI 269
              I   ++S   +++     +  KA  L  + +E+      +  P LV  ++   +VD+
Sbjct: 772 VQRIFAGAQSSMALTTEGHLYSWGKASCLGHQQVERSVQGCSV--PRLVSSLQHKRLVDV 829

Query: 270 ACGFDHSLVLGRNGVLLSCGSNVYGQLGREK---QDMGMFPVDINFHPVSISSGLGHSLA 326
           A G  H L L   G +   G N   Q+       + +   P+ +   P   +SG+     
Sbjct: 830 AVGVAHCLALTSCGEVFGWGRNDSQQICPSSVSCEPLLRLPILVGL-PTLPASGIA---- 884

Query: 327 ICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPDNVPLVVE 366
            C    S +           W +SSQ G   P   P V++
Sbjct: 885 -CTASQSLI-----------WTQSSQQGL--PLRAPFVID 910



 Score = 71.2 bits (173), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 56/182 (30%), Positives = 92/182 (50%), Gaps = 14/182 (7%)

Query: 29   VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLP-SDVTSVSAGHY--HSLAVTNNGAV 85
            + ++G G  G LG      G      +P +V  L    V  V+ G     +LA+T +GAV
Sbjct: 3187 LYTWGLGEYGRLG-----HGDNATQLKPKQVTALAGRRVIQVACGSRDAQTLALTEDGAV 3241

Query: 86   WAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNV-CAAFASGVVSSAIGDDGSLWVWG 144
            ++WG  +  +LGRG  E  AT ++ +R+ G+  + + C A  S  ++ A    G +W WG
Sbjct: 3242 FSWGDGDFGKLGRGGSEGSATPHEIERLSGIGVIQIECGAQFSLALTRA----GEVWTWG 3297

Query: 145  KSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRI 204
            K    +LG G D      P  +  L G +++ V+ G  H LA T+ G+++ WG +  G+ 
Sbjct: 3298 KGDYYRLGHGGD-QHVRKPQPIGGLRGRRVIHVAVGALHCLAVTDAGQVYAWGDNDHGQQ 3356

Query: 205  GN 206
            G+
Sbjct: 3357 GS 3358



 Score = 69.7 bits (169), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 51/182 (28%), Positives = 90/182 (49%), Gaps = 14/182 (7%)

Query: 29   VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGL----PSDVTSVSAGHYHSLAVTNNGA 84
            V+++G G  G LG      G   D   P  V  L      D+ +  +G   +L +T++  
Sbjct: 4306 VLTWGKGRYGRLG-----HGDSEDQLRPKLVEALLGYRAIDI-ACGSGDAQTLCITDDDN 4359

Query: 85   VWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWG 144
            VW+WG  +  +LGRG  +       P ++E L  + V         S A+   G+++ WG
Sbjct: 4360 VWSWGDGDYGKLGRGGSDG---CKLPYKIESLAGLGVIKVECGSQFSVALTKSGAVYTWG 4416

Query: 145  KSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRI 204
            K    +LG G  +     P +V AL G+KI+ ++ G  H +A ++ G+++ WG + +G++
Sbjct: 4417 KGDFHRLGHGS-VDHVRRPKKVAALQGKKIISIATGSLHCVACSDAGEVYTWGDNDEGQL 4475

Query: 205  GN 206
            G+
Sbjct: 4476 GD 4477



 Score = 68.6 bits (166), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 52/157 (33%), Positives = 75/157 (47%), Gaps = 10/157 (6%)

Query: 31   SFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPS-DVTSVSAGHYHSLAVTNNGAVWAWG 89
            S+GDG  G LG      G       P ++  L    V  V  G   S+A+T +GAV+ WG
Sbjct: 4362 SWGDGDYGKLG-----RGGSDGCKLPYKIESLAGLGVIKVECGSQFSVALTKSGAVYTWG 4416

Query: 90   RNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRG 149
            + +  +LG G+++       PK+V  L    + +     +   A  D G ++ WG +  G
Sbjct: 4417 KGDFHRLGHGSVDH---VRRPKKVAALQGKKIISIATGSLHCVACSDAGEVYTWGDNDEG 4473

Query: 150  QLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALA 186
            QLG G  +T    P  V AL G+ IVKV+ G  H LA
Sbjct: 4474 QLGDGT-VTAIQRPRLVAALQGKHIVKVTCGSAHTLA 4509



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 77/302 (25%), Positives = 125/302 (41%), Gaps = 75/302 (24%)

Query: 85   VWAWGRNNEVQLG--RGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWV 142
            V  WG N++ QLG  +G+     T++  + +  L  +++     S  +   +  DG ++ 
Sbjct: 3029 VMVWGLNDKEQLGGLKGSKVKVPTFS--QTISRLRPIHISGGSKSLFI---VSQDGKVFA 3083

Query: 143  WGKSKRGQLGLGKDITEAI-VPSRVEALAGEKIVKVSFGWG--HALAQTEDGKLFGWGYS 199
             G+   G+LGLG  +T  + +P ++  L    + KV+   G  HALA T DGK+F WG  
Sbjct: 3084 CGEGTNGRLGLG--VTHNVPLPHQLPVLHQYVVKKVAVHSGGKHALALTLDGKVFSWGEG 3141

Query: 200  ADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPF 259
             DG++G+  +                       +T++K                    P 
Sbjct: 3142 EDGKLGHGNR-----------------------TTLDK--------------------PR 3158

Query: 260  LVEGV---EVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDIN----- 311
            LVE +   ++ D+ACG  HS  +   G L + G   YG+LG       + P  +      
Sbjct: 3159 LVEALRAKKIRDVACGSSHSAAISSQGELYTWGLGEYGRLGHGDNATQLKPKQVTALAGR 3218

Query: 312  -FHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPDN--VPLVVEGL 368
                V+  S    +LA+ E        GA  + SWG     +LGR G +    P  +E L
Sbjct: 3219 RVIQVACGSRDAQTLALTE-------DGA--VFSWGDGDFGKLGRGGSEGSATPHEIERL 3269

Query: 369  EG 370
             G
Sbjct: 3270 SG 3271



 Score = 55.8 bits (133), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 77/294 (26%), Positives = 117/294 (39%), Gaps = 59/294 (20%)

Query: 85   VWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWG 144
            ++ WG N+  QLG G   SR     P   E L  +             A+  DG L+  G
Sbjct: 4148 IYGWGHNHRGQLG-GLEGSRI--KTPTPCEALSLLRPVQLAGGEQSLFAVTPDGKLFATG 4204

Query: 145  KSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWG--HALAQTEDGKLFGWGYSADG 202
                G+LG+G   + AI P+ + +L    + KV+   G  H LA T +G+++ WG   DG
Sbjct: 4205 YGSGGRLGVGGSDSWAI-PTLLGSLQHVFVKKVAVNSGGKHCLALTTEGEVYAWGEGEDG 4263

Query: 203  RIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVE 262
            ++G+  +     P                        KLV                  + 
Sbjct: 4264 KLGHGNRMSYDRP------------------------KLVEH----------------LN 4283

Query: 263  GVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDIN----FHPVSIS 318
            G+ V DIACG  HS  +  +G +L+ G   YG+LG    +  + P  +     +  + I+
Sbjct: 4284 GMSVADIACGSAHSAAITSSGHVLTWGKGRYGRLGHGDSEDQLRPKLVEALLGYRAIDIA 4343

Query: 319  SGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPD--NVPLVVEGLEG 370
             G G +  +C     NV        SWG     +LGR G D   +P  +E L G
Sbjct: 4344 CGSGDAQTLCITDDDNVW-------SWGDGDYGKLGRGGSDGCKLPYKIESLAG 4390



 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 79/309 (25%), Positives = 122/309 (39%), Gaps = 55/309 (17%)

Query: 69   VSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNV--CAAFA 126
            ++ G     AVT +G ++A G  +  +LG G  +S   W  P  +  L  V V   A  +
Sbjct: 4184 LAGGEQSLFAVTPDGKLFATGYGSGGRLGVGGSDS---WAIPTLLGSLQHVFVKKVAVNS 4240

Query: 127  SGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALA 186
             G    A+  +G ++ WG+ + G+LG G  ++    P  VE L G  +  ++ G  H+ A
Sbjct: 4241 GGKHCLALTTEGEVYAWGEGEDGKLGHGNRMSYD-RPKLVEHLNGMSVADIACGSAHSAA 4299

Query: 187  QTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGM 246
             T  G +  WG    GR G LG                                    G 
Sbjct: 4300 ITSSGHVLTWG---KGRYGRLG-----------------------------------HGD 4321

Query: 247  EKEKYMPIIWEPFLVEGVEVVDIACGF--DHSLVLGRNGVLLSCGSNVYGQLGREKQDMG 304
             +++  P + E  L  G   +DIACG     +L +  +  + S G   YG+LGR   D  
Sbjct: 4322 SEDQLRPKLVEALL--GYRAIDIACGSGDAQTLCITDDDNVWSWGDGDYGKLGRGGSDGC 4379

Query: 305  MFPVDINFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPDNV--P 362
              P  I        +GLG     C  + S     +  + +WG     +LG    D+V  P
Sbjct: 4380 KLPYKIES-----LAGLGVIKVECGSQFSVALTKSGAVYTWGKGDFHRLGHGSVDHVRRP 4434

Query: 363  LVVEGLEGE 371
              V  L+G+
Sbjct: 4435 KKVAALQGK 4443



 Score = 40.0 bits (92), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 24/64 (37%), Positives = 36/64 (56%), Gaps = 1/64 (1%)

Query: 135  GDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLF 194
            G   +++ WG + RGQLG G + +    P+  EAL+  + V+++ G     A T DGKLF
Sbjct: 4143 GGASTIYGWGHNHRGQLG-GLEGSRIKTPTPCEALSLLRPVQLAGGEQSLFAVTPDGKLF 4201

Query: 195  GWGY 198
              GY
Sbjct: 4202 ATGY 4205


>gi|326914182|ref|XP_003203406.1| PREDICTED: RCC1 and BTB domain-containing protein 1-like [Meleagris
           gallopavo]
          Length = 537

 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 57/162 (35%), Positives = 96/162 (59%), Gaps = 5/162 (3%)

Query: 62  LPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNV 121
           L   V  V+ G +HS+A++ +G ++AWG NN  Q+G G+  ++ T   P+RV    Q  +
Sbjct: 132 LLKKVIEVACGSHHSMALSFDGDLYAWGYNNCGQVGSGSTANQPT---PRRVSNCLQDKM 188

Query: 122 CAAFASGVVSS-AIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFG 180
               A G  SS A+ ++G ++ WG +  GQLGLG +  + + P RV AL G  I++++ G
Sbjct: 189 VVGIACGQTSSMAVVNNGEVYGWGYNGNGQLGLGNNGNQ-LTPCRVAALHGVCILQIACG 247

Query: 181 WGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDR 222
           + H LA T++G L+ WG +  G++G   K+ + SPL   +++
Sbjct: 248 YAHTLALTDEGLLYAWGANTYGQLGTGNKSNQLSPLQIMMEK 289



 Score = 85.1 bits (209), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 79/296 (26%), Positives = 120/296 (40%), Gaps = 73/296 (24%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLP-SDVTSVSAGH-YHSLAVTNNGAVW 86
           V  FG      LG     TG       P ++  L    ++S+S G   H L  T +G V+
Sbjct: 49  VFVFGLNCSNCLG-----TGDSQSTIVPKKLEALCGKKISSLSYGSGPHVLLCTEDGEVY 103

Query: 87  AWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVV---------SSAIGDD 137
           AWG N   QLG GA             +G+  V VC       V         S A+  D
Sbjct: 104 AWGHNGYSQLGNGATN-----------QGVTPVQVCTNLLLKKVIEVACGSHHSMALSFD 152

Query: 138 GSLWVWGKSKRGQLGLGKDITEAIVPSRV-EALAGEKIVKVSFGWGHALAQTEDGKLFGW 196
           G L+ WG +  GQ+G G    +   P RV   L  + +V ++ G   ++A   +G+++GW
Sbjct: 153 GDLYAWGYNNCGQVGSGSTANQP-TPRRVSNCLQDKMVVGIACGQTSSMAVVNNGEVYGW 211

Query: 197 GYSADGR--IGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPI 254
           GY+ +G+  +GN G  L    + +                                    
Sbjct: 212 GYNGNGQLGLGNNGNQLTPCRVAA------------------------------------ 235

Query: 255 IWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDI 310
                 + GV ++ IACG+ H+L L   G+L + G+N YGQLG   +   + P+ I
Sbjct: 236 ------LHGVCILQIACGYAHTLALTDEGLLYAWGANTYGQLGTGNKSNQLSPLQI 285



 Score = 62.8 bits (151), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 66/267 (24%), Positives = 112/267 (41%), Gaps = 55/267 (20%)

Query: 110 PKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEAL 169
           P+ +  + +  V    A+  + +   D+  ++V+G +    LG G D    IVP ++EAL
Sbjct: 21  PQEIASIRKACVFGTSANEAIYTTHNDE--VFVFGLNCSNCLGTG-DSQSTIVPKKLEAL 77

Query: 170 AGEKIVKVSFGWG-HALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQ 228
            G+KI  +S+G G H L  TEDG+++ WG++   ++GN       +P+            
Sbjct: 78  CGKKISSLSYGSGPHVLLCTEDGEVYAWGHNGYSQLGNGATNQGVTPV------------ 125

Query: 229 EISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSC 288
           ++ ++ + K                           +V+++ACG  HS+ L  +G L + 
Sbjct: 126 QVCTNLLLK---------------------------KVIEVACGSHHSMALSFDGDLYAW 158

Query: 289 GSNVYGQLGREKQDMGMFPVDINFHPVSISSGLGHSLAI---CEVRSSNVTGGARGIVSW 345
           G N  GQ+G         P      P  +S+ L   + +   C   SS        +  W
Sbjct: 159 GYNNCGQVG--SGSTANQPT-----PRRVSNCLQDKMVVGIACGQTSSMAVVNNGEVYGW 211

Query: 346 GWNRSSQ--LGRMGPDNVPLVVEGLEG 370
           G+N + Q  LG  G    P  V  L G
Sbjct: 212 GYNGNGQLGLGNNGNQLTPCRVAALHG 238


>gi|302803630|ref|XP_002983568.1| hypothetical protein SELMODRAFT_118244 [Selaginella moellendorffii]
 gi|300148811|gb|EFJ15469.1| hypothetical protein SELMODRAFT_118244 [Selaginella moellendorffii]
          Length = 413

 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 105/346 (30%), Positives = 150/346 (43%), Gaps = 55/346 (15%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPS-DVTSVSAGHYHSLAVTNNGAVWA 87
           V  +G+G QG LGL  S     G  +EP     L S +  SVS G  H+L +T+ G V+A
Sbjct: 30  VALWGNGDQGRLGLSES-----GSQFEPVLCRALESHEPCSVSCGGAHTLILTDKGRVFA 84

Query: 88  WGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVV-SSAIGDDGSLWVWGKS 146
            G N+  QLG   L+S +++ DP  V G    + C   A+G   S+AI   G  +VWG++
Sbjct: 85  TGLNSSGQLGV-PLKSESSF-DPVEVHGFP--DPCVHIAAGRYHSAAITSSGETYVWGRN 140

Query: 147 KRGQLGLGKDITEA-IVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIG 205
             GQLGLGK      I P ++E+LAG ++  ++ G  H+L   E G++  WG +   R G
Sbjct: 141 SEGQLGLGKRAKSVYITPQKMESLAGMRLKALALGTDHSLGLAETGQVLSWGTN---RFG 197

Query: 206 NLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVE 265
            LG    +   D   D                            +Y P I     +E ++
Sbjct: 198 CLGHGEMTGFFDFFKD--------------------------TNEYTPRIIH--CLEKLQ 229

Query: 266 VVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFHP--VSISSGLGH 323
           V  ++ G  HS     +G + S G     QLG    +    P  I   P   SIS G  H
Sbjct: 230 VRSVSAGLVHSACADDSGTIYSFGQGSMCQLGLGNNNDASQPCPIPDLPRVSSISCGGYH 289

Query: 324 SLAICEVRSSNVTGGARGIVSWGWNRSSQLGR-MGPDNVPLVVEGL 368
           + AI +            I +WG N    LG      + PL +E L
Sbjct: 290 TGAITQDGD---------IYTWGSNEHGCLGSGFRASSKPLRLESL 326



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 83/335 (24%), Positives = 143/335 (42%), Gaps = 41/335 (12%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAW 88
           V + G  S G LG+P         +++P  V G P     ++AG YHS A+T++G  + W
Sbjct: 82  VFATGLNSSGQLGVPLKSE----SSFDPVEVHGFPDPCVHIAAGRYHSAAITSSGETYVW 137

Query: 89  GRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKR 148
           GRN+E QLG G   +++ +  P+++E L  + + A       S  + + G +  WG ++ 
Sbjct: 138 GRNSEGQLGLGK-RAKSVYITPQKMESLAGMRLKALALGTDHSLGLAETGQVLSWGTNRF 196

Query: 149 GQLGLG---------KDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKL--FGWG 197
           G LG G         KD  E   P  +  L   ++  VS G  H+    + G +  FG G
Sbjct: 197 GCLGHGEMTGFFDFFKDTNE-YTPRIIHCLEKLQVRSVSAGLVHSACADDSGTIYSFGQG 255

Query: 198 YSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIW- 256
                 +GN   A +  P+      SS S     +  I +   + + G  +   +   + 
Sbjct: 256 SMCQLGLGNNNDASQPCPIPDLPRVSSISCGGYHTGAITQDGDIYTWGSNEHGCLGSGFR 315

Query: 257 ---EPFLVEGVE---VVDIACGFDHSLVL-----------GRNGVLLSCGSNVYGQLGRE 299
              +P  +E +    + +I+CG+ H+  +           G  G   +   +  GQLG  
Sbjct: 316 ASSKPLRLESLAEAFMSEISCGWKHTAAISDGYIFSWGWGGSYGTYATQAESSGGQLGV- 374

Query: 300 KQDMGMF---PVDIN--FHPVSISSGLGHSLAICE 329
             D   F   P++++     + +S G  H+ AI E
Sbjct: 375 GTDFDFFEPVPIEMDDRLSALHVSCGFNHTAAILE 409


>gi|118084892|ref|XP_417063.2| PREDICTED: RCC1 and BTB domain-containing protein 1 [Gallus gallus]
          Length = 537

 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 57/162 (35%), Positives = 96/162 (59%), Gaps = 5/162 (3%)

Query: 62  LPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNV 121
           L   V  V+ G +HS+A++ +G ++AWG NN  Q+G G+  ++ T   P+RV    Q  +
Sbjct: 132 LLKKVIEVACGSHHSMALSFDGDLYAWGYNNCGQVGSGSTANQPT---PRRVSNCLQDKM 188

Query: 122 CAAFASGVVSS-AIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFG 180
               A G  SS A+ ++G ++ WG +  GQLGLG +  + + P RV AL G  I++++ G
Sbjct: 189 VVGIACGQTSSMAVVNNGEVYGWGYNGNGQLGLGNNGNQ-LTPCRVAALHGVCILQIACG 247

Query: 181 WGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDR 222
           + H LA T++G L+ WG +  G++G   K+ + SPL   +++
Sbjct: 248 YAHTLALTDEGLLYAWGANTYGQLGTGNKSNQLSPLQIMMEK 289



 Score = 85.1 bits (209), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 79/296 (26%), Positives = 120/296 (40%), Gaps = 73/296 (24%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLP-SDVTSVSAGH-YHSLAVTNNGAVW 86
           V  FG      LG     TG       P ++  L    ++S+S G   H L  T +G V+
Sbjct: 49  VFVFGLNCSNCLG-----TGDSQSTIVPKKLEALCGKKISSLSYGSGPHVLLCTEDGEVY 103

Query: 87  AWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVV---------SSAIGDD 137
           AWG N   QLG GA             +G+  V VC       V         S A+  D
Sbjct: 104 AWGHNGYSQLGNGATN-----------QGVTPVQVCTNLLLKKVIEVACGSHHSMALSFD 152

Query: 138 GSLWVWGKSKRGQLGLGKDITEAIVPSRV-EALAGEKIVKVSFGWGHALAQTEDGKLFGW 196
           G L+ WG +  GQ+G G    +   P RV   L  + +V ++ G   ++A   +G+++GW
Sbjct: 153 GDLYAWGYNNCGQVGSGSTANQP-TPRRVSNCLQDKMVVGIACGQTSSMAVVNNGEVYGW 211

Query: 197 GYSADGR--IGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPI 254
           GY+ +G+  +GN G  L    + +                                    
Sbjct: 212 GYNGNGQLGLGNNGNQLTPCRVAA------------------------------------ 235

Query: 255 IWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDI 310
                 + GV ++ IACG+ H+L L   G+L + G+N YGQLG   +   + P+ I
Sbjct: 236 ------LHGVCILQIACGYAHTLALTDEGLLYAWGANTYGQLGTGNKSNQLSPLQI 285



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 66/267 (24%), Positives = 112/267 (41%), Gaps = 55/267 (20%)

Query: 110 PKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEAL 169
           P+ +  + +  V    A+  + +   D+  ++V+G +    LG G D    IVP ++EAL
Sbjct: 21  PQEIASIRKACVFGTSANEAIYTTHNDE--VFVFGLNCSNCLGTG-DSQSTIVPKKLEAL 77

Query: 170 AGEKIVKVSFGWG-HALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQ 228
            G+KI  +S+G G H L  TEDG+++ WG++   ++GN       +P+            
Sbjct: 78  CGKKISSLSYGSGPHVLLCTEDGEVYAWGHNGYSQLGNGATNQGVTPV------------ 125

Query: 229 EISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSC 288
           ++ ++ + K                           +V+++ACG  HS+ L  +G L + 
Sbjct: 126 QVCTNLLLK---------------------------KVIEVACGSHHSMALSFDGDLYAW 158

Query: 289 GSNVYGQLGREKQDMGMFPVDINFHPVSISSGLGHSLAI---CEVRSSNVTGGARGIVSW 345
           G N  GQ+G         P      P  +S+ L   + +   C   SS        +  W
Sbjct: 159 GYNNCGQVG--SGSTANQPT-----PRRVSNCLQDKMVVGIACGQTSSMAVVNNGEVYGW 211

Query: 346 GWNRSSQ--LGRMGPDNVPLVVEGLEG 370
           G+N + Q  LG  G    P  V  L G
Sbjct: 212 GYNGNGQLGLGNNGNQLTPCRVAALHG 238


>gi|110637510|ref|YP_677717.1| alpha-tubulin suppressor [Cytophaga hutchinsonii ATCC 33406]
 gi|110280191|gb|ABG58377.1| alpha-tubulin suppressor [Cytophaga hutchinsonii ATCC 33406]
          Length = 911

 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 83/270 (30%), Positives = 130/270 (48%), Gaps = 17/270 (6%)

Query: 68  SVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFAS 127
           S++ G  + LA+  +G +WAWG N   QLG G  + R     PK++ G     V  A AS
Sbjct: 523 SIATGSNYILALKADGTLWAWGDNFSGQLGDGTEQPRML---PKQI-GTATTWVSIAAAS 578

Query: 128 GVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQ 187
           GV S  I  DGSLW WG +  G+LGLG ++ + +VP+RV    G   + +  G GH L  
Sbjct: 579 GVQSFGIQADGSLWSWGHNYDGELGLGTNL-KTLVPTRVG--TGTDWISIKTGVGHTLGI 635

Query: 188 TEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRS--SESDQEISSSTIEKAQKLVSEG 245
             DG L+GWG +  G++G+     +  P+    DR   + +   I +  ++    L + G
Sbjct: 636 KSDGTLWGWGTNRQGQLGDGTLVNKYVPVQLGTDRDWINIAGGTIHNICLKSNGTLWAWG 695

Query: 246 MEKEKYM---PIIWEPFLVE---GVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQL--G 297
                 +    +I +  +V+       +D+    D S  +  +G L +CG N  GQL  G
Sbjct: 696 RNNYGQVGTGNLITQDRMVQISAEQNWIDVYASLDQSFAIRADGSLWACGLNSSGQLGDG 755

Query: 298 REKQDMGMFPVDINFHPVSISSGLGHSLAI 327
                  M  V  N   +S+++G  H+LA+
Sbjct: 756 TSVDRAAMVAVGTNQKWISLAAGNYHTLAL 785



 Score = 98.6 bits (244), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 98/346 (28%), Positives = 159/346 (45%), Gaps = 39/346 (11%)

Query: 32  FGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRN 91
           +G  S G LG  T++     D   P ++ G+  +  +V+ G  ++LA+  +G +W+WG+N
Sbjct: 143 WGYNSNGQLGDGTTM-----DRRTPVKI-GIDINWVAVATGSSYTLALKADGTLWSWGKN 196

Query: 92  NEVQLGRGALESRATWNDPKRVEGLDQ--VNVCAAFASGVVSSAIGDDGSLWVWGKSKRG 149
              QLG G    R   + P ++ G +Q    + A F+SG+    I  +G+LW WG +  G
Sbjct: 197 QRGQLGDGTTIDR---HSPVQI-GTEQTWTGIAACFSSGI---GIKANGTLWTWGFNNGG 249

Query: 150 QLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGK 209
           +LG+G +  E   P  V+  A +  +    G  H +A   DG L+GWG +  G IGN   
Sbjct: 250 ELGIGNN-DEKHTP--VQVGADQNWLYAVAGSNHIVALKVDGSLWGWGLNEAGEIGNGNT 306

Query: 210 ALESSPLDSNIDRSSESDQEISSST--IEKAQKLVSEGMEKEKYM--------PIIWEPF 259
             + SP+    D    +    S+ T  I+    L + G      +        P      
Sbjct: 307 VQQDSPVRVGTDNDWTTLAAGSNHTLAIKSNGTLWAWGHNVRGNLGNGTATLDPATLPVQ 366

Query: 260 LVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDI-NFHP-VSI 317
           +    + + ++ G DHS+ L  NG L + G NV GQLG         PV I   H  V+I
Sbjct: 367 VGTDADWIRVSAGLDHSVALKANGTLWAWGYNVRGQLGYGSGTDKHLPVQIGTAHTWVAI 426

Query: 318 SSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPDNVPL 363
           ++G  H++ +    S         + +WG N ++QLG  G  + P+
Sbjct: 427 NAGTYHTIGVKADGS---------LWTWGDNTNAQLGDGGTADQPV 463



 Score = 82.4 bits (202), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 83/274 (30%), Positives = 123/274 (44%), Gaps = 39/274 (14%)

Query: 56  PTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRG-ALESRATWNDPKRV- 113
           P RV G  +D T+++AG  H+LA+ +NG +WAWG N    LG G A    AT   P +V 
Sbjct: 312 PVRV-GTDNDWTTLAAGSNHTLAIKSNGTLWAWGHNVRGNLGNGTATLDPAT--LPVQVG 368

Query: 114 EGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEK 173
              D + V A     V   A+  +G+LW WG + RGQLG G   T+  +P  V+      
Sbjct: 369 TDADWIRVSAGLDHSV---ALKANGTLWAWGYNVRGQLGYGSG-TDKHLP--VQIGTAHT 422

Query: 174 IVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSS 233
            V ++ G  H +    DG L+ WG + + ++G+ G A    P+  +I  + +    I++S
Sbjct: 423 WVAINAGTYHTIGVKADGSLWTWGDNTNAQLGDGGTA--DQPVPHSIRTAPDDWISIAAS 480

Query: 234 TIEKAQKLVSEGMEKEKYMPIIW----EPFLVEG-------------VEVVDIACGFDHS 276
                    S G++       IW     PF  +G                  IA G ++ 
Sbjct: 481 ------NAFSMGLKANG---TIWTWGLNPFETDGQYKNSSPVQTGSDQNWKSIATGSNYI 531

Query: 277 LVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDI 310
           L L  +G L + G N  GQLG   +   M P  I
Sbjct: 532 LALKADGTLWAWGDNFSGQLGDGTEQPRMLPKQI 565



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 58/191 (30%), Positives = 91/191 (47%), Gaps = 22/191 (11%)

Query: 4   LKSVVHNHVNVLTSRIFMRSASGTAVVSFGDGS--------QGALGLPTSLTGVGGDAYE 55
           LK++V   V   T  I +++  G  +    DG+        QG LG  T +     + Y 
Sbjct: 608 LKTLVPTRVGTGTDWISIKTGVGHTLGIKSDGTLWGWGTNRQGQLGDGTLV-----NKYV 662

Query: 56  PTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEG 115
           P ++ G   D  +++ G  H++ + +NG +WAWGRNN  Q+G G L ++      + V+ 
Sbjct: 663 PVQL-GTDRDWINIAGGTIHNICLKSNGTLWAWGRNNYGQVGTGNLITQ-----DRMVQI 716

Query: 116 LDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIV 175
             + N    +AS   S AI  DGSLW  G +  GQLG G  +  A   + V     +K +
Sbjct: 717 SAEQNWIDVYASLDQSFAIRADGSLWACGLNSSGQLGDGTSVDRA---AMVAVGTNQKWI 773

Query: 176 KVSFGWGHALA 186
            ++ G  H LA
Sbjct: 774 SLAAGNYHTLA 784


>gi|383319186|ref|YP_005380027.1| chromosome condensation regulator RCC1 [Methanocella conradii
           HZ254]
 gi|379320556|gb|AFC99508.1| regulator of chromosome condensation RCC1 [Methanocella conradii
           HZ254]
          Length = 439

 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 79/252 (31%), Positives = 119/252 (47%), Gaps = 32/252 (12%)

Query: 54  YEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRV 113
           Y P +V GL  +V  +SAG +HSLA+  +G VWAWG N E +LG G  E+R T   P +V
Sbjct: 118 YTPVQVQGL-DNVVMISAGDFHSLALKKDGTVWAWGLNREYELGDGTTENRYT---PVQV 173

Query: 114 EGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEK 173
           EGL  V             AI +DG++W  GK+           T   VP +V  L   K
Sbjct: 174 EGLSGVRQIMG-----PCFAIKEDGTVWARGKAMG---------TNGTVPYQVPGLRNVK 219

Query: 174 IVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDS-NIDRSSESDQEISS 232
            + + +G+ HAL   EDG ++ WG + +G++G+      S P  +  +   +  D +  S
Sbjct: 220 AIDMDYGYTHALFIKEDGTVWAWGLNTNGQLGDGSLLDRSDPYKTVPVQVKNLKDAKAVS 279

Query: 233 STIEKAQKLVSEGM----------EKEKYM--PIIWEPFLVEGVE-VVDIACGFDHSLVL 279
           + I  +  L  +G           +    M   I+  P +V+G+  VV I+    HS  L
Sbjct: 280 AGIMTSMALKDDGTVWVWGLNGGGQHGVGMVGDIVATPKMVQGLSGVVAISSKLVHSAFL 339

Query: 280 GRNGVLLSCGSN 291
             +G +  CG N
Sbjct: 340 KEDGSVWVCGEN 351



 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 60/231 (25%), Positives = 111/231 (48%), Gaps = 14/231 (6%)

Query: 68  SVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFAS 127
           +V+ GH+H+LA+ ++G +W  G  NE   G G      ++        +   +V A  A 
Sbjct: 34  AVAVGHFHTLALADDGTIWKSG--NEYTPGSGPYADEFSYVQ------IPISDVVAIAAG 85

Query: 128 GVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQ 187
           G  S A+  DG++W WG +  GQLG G        P +V+ L  + +V +S G  H+LA 
Sbjct: 86  GFHSLALKKDGTVWAWGVNNFGQLGDGT-TENRYTPVQVQGL--DNVVMISAGDFHSLAL 142

Query: 188 TEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSS-TIEKAQKLVSEGM 246
            +DG ++ WG + +  +G+       +P+   ++  S   Q +     I++   + + G 
Sbjct: 143 KKDGTVWAWGLNREYELGDGTTENRYTPV--QVEGLSGVRQIMGPCFAIKEDGTVWARGK 200

Query: 247 EKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLG 297
                  + ++   +  V+ +D+  G+ H+L +  +G + + G N  GQLG
Sbjct: 201 AMGTNGTVPYQVPGLRNVKAIDMDYGYTHALFIKEDGTVWAWGLNTNGQLG 251



 Score = 48.5 bits (114), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 39/110 (35%), Positives = 57/110 (51%), Gaps = 13/110 (11%)

Query: 265 EVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDIN--FHPVSISSGLG 322
           +VV IA G  HSL L ++G + + G N +GQLG    +    PV +    + V IS+G  
Sbjct: 78  DVVAIAAGGFHSLALKKDGTVWAWGVNNFGQLGDGTTENRYTPVQVQGLDNVVMISAGDF 137

Query: 323 HSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPDN--VPLVVEGLEG 370
           HSLA+ +  +         + +WG NR  +LG    +N   P+ VEGL G
Sbjct: 138 HSLALKKDGT---------VWAWGLNREYELGDGTTENRYTPVQVEGLSG 178


>gi|357163608|ref|XP_003579788.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC1-like
           [Brachypodium distachyon]
          Length = 449

 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 91/335 (27%), Positives = 146/335 (43%), Gaps = 64/335 (19%)

Query: 26  GTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSD-VTSVSAGHYHSLAVTNN-G 83
           G  + S+G G  G LG      G   D   PT + G  +  +TSV  G  H+ A +    
Sbjct: 39  GNVLCSWGRGEDGQLG-----HGDAEDRLVPTVISGFDAPRITSVICGADHTTAYSEEEQ 93

Query: 84  AVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVW 143
            V++WG  +  +LG G      T   P+ V  L  + +           A+   G +  W
Sbjct: 94  QVYSWGWGDFGRLGHGNSSDVFT---PQPVRALQGIKIKQMACGDSHCLAVTMGGEVQSW 150

Query: 144 GKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGR 203
           G+++ GQLGLG    ++++P +++A  G  +  ++ G  H  A TEDG L+GWG+   GR
Sbjct: 151 GRNQNGQLGLGT-TEDSLLPQKIQAFEGICVKMIAAGAEHTAAVTEDGDLYGWGW---GR 206

Query: 204 IGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEG 263
            GNLG                           ++  + V E +             LVEG
Sbjct: 207 YGNLGLG-------------------------DRNDRFVPEKVS------------LVEG 229

Query: 264 VEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDI----NFHPVSISS 319
            ++V IACG+ H++ +  +G+L + G + YGQLG    +  +FP  +    +     IS 
Sbjct: 230 EKMVLIACGWRHTITVSSSGILYTYGWSKYGQLGHGDFEDHLFPHKVEALKDSSTSQISG 289

Query: 320 GLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLG 354
           G  H++A+              +  WGWN+  Q+G
Sbjct: 290 GWRHTMALTSDGK---------LYGWGWNKFGQVG 315



 Score = 95.9 bits (237), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 81/289 (28%), Positives = 123/289 (42%), Gaps = 34/289 (11%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPS-DVTSVSAGHYHSLAVTNNGAVWA 87
           V S+G G  G LG      G   D + P  V  L    +  ++ G  H LAVT  G V +
Sbjct: 95  VYSWGWGDFGRLG-----HGNSSDVFTPQPVRALQGIKIKQMACGDSHCLAVTMGGEVQS 149

Query: 88  WGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSK 147
           WGRN   QLG G  E       P++++  + + V    A    ++A+ +DG L+ WG  +
Sbjct: 150 WGRNQNGQLGLGTTEDSLL---PQKIQAFEGICVKMIAAGAEHTAAVTEDGDLYGWGWGR 206

Query: 148 RGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNL 207
            G LGLG D  +  VP +V  + GEK+V ++ GW H +  +  G L+ +G+S  G++G+ 
Sbjct: 207 YGNLGLG-DRNDRFVPEKVSLVEGEKMVLIACGWRHTITVSSSGILYTYGWSKYGQLGH- 264

Query: 208 GKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGV--- 264
               E       ++   +S     S        L S+G    K     W  F   G    
Sbjct: 265 -GDFEDHLFPHKVEALKDSSTSQISGGWRHTMALTSDG----KLYGWGWNKFGQVGAGDS 319

Query: 265 ---------------EVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGR 298
                          +V  +ACG+ H+L       + + G    GQLG 
Sbjct: 320 VDHCSPVQVMFPAEQKVAQVACGWRHTLAYTEKKNVFAWGRGTSGQLGH 368



 Score = 72.4 bits (176), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 63/225 (28%), Positives = 105/225 (46%), Gaps = 12/225 (5%)

Query: 32  FGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSD-VTSVSAGHYHSLAVTNNGAVWAWGR 90
           +G G  G LGL     G   D + P +V  +  + +  ++ G  H++ V+++G ++ +G 
Sbjct: 202 WGWGRYGNLGL-----GDRNDRFVPEKVSLVEGEKMVLIACGWRHTITVSSSGILYTYGW 256

Query: 91  NNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQ 150
           +   QLG G  E       P +VE L   +          + A+  DG L+ WG +K GQ
Sbjct: 257 SKYGQLGHGDFEDHLF---PHKVEALKDSSTSQISGGWRHTMALTSDGKLYGWGWNKFGQ 313

Query: 151 LGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKA 210
           +G G D  +   P +V   A +K+ +V+ GW H LA TE   +F WG    G++G+    
Sbjct: 314 VGAG-DSVDHCSPVQVMFPAEQKVAQVACGWRHTLAYTEKKNVFAWGRGTSGQLGHGEIV 372

Query: 211 LESSPL--DSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMP 253
             + PL  D+     S S +  SS+ +    K+     E+   +P
Sbjct: 373 DRNKPLMIDAISPDGSGSKKLESSTAVPFTAKVWVSPSERYALVP 417


>gi|148223431|ref|NP_001085755.1| HECT and RLD domain containing E3 ubiquitin protein ligase family
           member 6 [Xenopus laevis]
 gi|49115314|gb|AAH73297.1| MGC80684 protein [Xenopus laevis]
          Length = 1028

 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 79/282 (28%), Positives = 135/282 (47%), Gaps = 31/282 (10%)

Query: 66  VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAF 125
           V  VS G  HSL +  +G + + G+N   QLGR    SR      +++  L+   +    
Sbjct: 36  VQKVSIGEKHSLYLLKDGTLLSCGQNPYGQLGRKGNNSRI-----EQISSLEAQTIVDVS 90

Query: 126 ASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHAL 185
                S A+ D+G+++ WG    GQLG GK  ++   P R+  L   KI+++S G  H++
Sbjct: 91  CGTNHSVAMCDEGNIYSWGDGSEGQLGTGKFSSKNFTPKRITGLLNRKIIQISCGNFHSV 150

Query: 186 AQTEDGKLFGWGYSADGRIG-----------NLGKALESSPLDSNIDRSSESDQEISSST 234
           A  EDG++F WG +  G++G            L K+L+  PL       S++     S T
Sbjct: 151 ALAEDGRVFSWGQNKCGQLGLGSQIINQATPQLVKSLKGIPLVQVTAGGSQTFALSMSGT 210

Query: 235 I-----EKAQKLVSEGMEKEKYMPIIWEPFLVEGVE---VVDIACGFDHSLVLGRNGVLL 286
           +       A +L  +   K+      ++P+ V+ +    V  I+CG +H+ VL ++G++ 
Sbjct: 211 VFAWGRNNAGQLGFKNDAKKG----TFKPYAVDSLRDLGVAYISCGEEHTAVLNKDGIVY 266

Query: 287 SCGSNVYGQLGREKQDMGMFPVDINFHPVSISS---GLGHSL 325
           + G + YGQLG++  +    P  I  +   +S    G  H+L
Sbjct: 267 TFGDDTYGQLGQQSGNQTSVPQKIEEYSRQVSQVACGRYHTL 308



 Score = 82.0 bits (201), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 55/181 (30%), Positives = 97/181 (53%), Gaps = 12/181 (6%)

Query: 29  VVSFGDGSQGALGLPTSLTG-VGGDAYEPTRVPGLPS-DVTSVSAGHYHSLAVTNNGAVW 86
           + S+GDGS+G LG     TG      + P R+ GL +  +  +S G++HS+A+  +G V+
Sbjct: 105 IYSWGDGSEGQLG-----TGKFSSKNFTPKRITGLLNRKIIQISCGNFHSVALAEDGRVF 159

Query: 87  AWGRNNEVQLGRGA-LESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGK 145
           +WG+N   QLG G+ + ++AT   P+ V+ L  + +    A G  + A+   G+++ WG+
Sbjct: 160 SWGQNKCGQLGLGSQIINQAT---PQLVKSLKGIPLVQVTAGGSQTFALSMSGTVFAWGR 216

Query: 146 SKRGQLGLGKDITE-AIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRI 204
           +  GQLG   D  +    P  V++L    +  +S G  H     +DG ++ +G    G++
Sbjct: 217 NNAGQLGFKNDAKKGTFKPYAVDSLRDLGVAYISCGEEHTAVLNKDGIVYTFGDDTYGQL 276

Query: 205 G 205
           G
Sbjct: 277 G 277



 Score = 52.0 bits (123), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 60/240 (25%), Positives = 95/240 (39%), Gaps = 60/240 (25%)

Query: 140 LWVWGKSKRGQLGLGKDITEAIVPSRVEAL-AGEKIVKVSFGWGHALAQTEDGKLFGWGY 198
           ++ WG +  GQL + ++  E +     +     E + KVS G  H+L   +DG L   G 
Sbjct: 1   MYCWGDNCFGQLAVLEEEKEVVHFKENDYFQKKESVQKVSIGEKHSLYLLKDGTLLSCGQ 60

Query: 199 SADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEP 258
           +  G++G  G                      ++S IE+   L                 
Sbjct: 61  NPYGQLGRKG----------------------NNSRIEQISSL----------------- 81

Query: 259 FLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVD-----INFH 313
              E   +VD++CG +HS+ +   G + S G    GQLG  K     F        +N  
Sbjct: 82  ---EAQTIVDVSCGTNHSVAMCDEGNIYSWGDGSEGQLGTGKFSSKNFTPKRITGLLNRK 138

Query: 314 PVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLG---RMGPDNVPLVVEGLEG 370
            + IS G  HS+A+ E          R + SWG N+  QLG   ++     P +V+ L+G
Sbjct: 139 IIQISCGNFHSVALAE--------DGR-VFSWGQNKCGQLGLGSQIINQATPQLVKSLKG 189


>gi|118396198|ref|XP_001030441.1| Regulator of chromosome condensation (RCC1) [Tetrahymena thermophila]
 gi|89284744|gb|EAR82778.1| Regulator of chromosome condensation (RCC1) [Tetrahymena thermophila
            SB210]
          Length = 1984

 Score = 99.8 bits (247), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 85/311 (27%), Positives = 152/311 (48%), Gaps = 53/311 (17%)

Query: 25   SGTAVVSFGDGSQGALGL----PTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVT 80
            +GT V+++GD S   LGL    P+S+         PT +P L +++ SVS G  H+LA+ 
Sbjct: 1560 AGT-VLAWGDNSHSQLGLGEKSPSSVPF-------PTPIPAL-TNIQSVSCGSEHTLALD 1610

Query: 81   NNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSL 140
              G V++WG      LG G   +      PK +E L  +NV      G+ S  +  +  +
Sbjct: 1611 YIGQVFSWGNGEGGLLGHG---NEDVCPSPKIIEALKGLNVDFIVCGGLHSLVLTKNRQV 1667

Query: 141  WVWGKSKRGQLGLGKDI-----TEAIVPSRVEA-LAGEKIVKVSFGWGHALAQTEDGKLF 194
            + WG+++ GQLG+ K +          P RV+  L G  +++++ G  H+LA   +G+++
Sbjct: 1668 YSWGRNEGGQLGIDKKLFTNEKCYLTTPKRVKGNLEGVGVIQIAAGEAHSLALALNGQVY 1727

Query: 195  GWGYSADGRIGNLGKALESSPL---------------------DSNIDRSSESDQEISSS 233
            GWGY+ +G+IG LG   ++ P+                     DSN     +   +I+S+
Sbjct: 1728 GWGYNMNGQIG-LGMQTDTYPVYEPQLIPKLNKIEKIFCCGLNDSNQLGLEKEPIKITST 1786

Query: 234  TIEKAQKLVSEGMEK---EKYMPIIWEPFLVEGVEVVDIACGFDHSLVL----GRNGVLL 286
            T     +   +  ++   + ++P   + F    + V+ ++CG +HSL L     ++ +L 
Sbjct: 1787 TNNILDQYKPQDQKRAVTDVFIPKKMDCF--HQIPVLHVSCGHNHSLALVVADTKHYMLF 1844

Query: 287  SCGSNVYGQLG 297
            + G + +GQLG
Sbjct: 1845 AWGMHKHGQLG 1855



 Score = 72.8 bits (177), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 82/303 (27%), Positives = 123/303 (40%), Gaps = 76/303 (25%)

Query: 83   GAVWAWGRNNEVQLG------RGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGD 136
            G +++WG+N E Q+G      +  L  +   N PK +  L    V +       S AI  
Sbjct: 1500 GVMFSWGQNTEGQMGNVYDPKQNLLSKKIKVNFPKLIVPLKDTIVTSVACGYQHSVAITY 1559

Query: 137  DGSLWVWGKSKRGQLGLGKDITEAI-VPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFG 195
             G++  WG +   QLGLG+    ++  P+ + AL    I  VS G  H LA    G++F 
Sbjct: 1560 AGTVLAWGDNSHSQLGLGEKSPSSVPFPTPIPALT--NIQSVSCGSEHTLALDYIGQVFS 1617

Query: 196  WGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPII 255
            WG    G +G+  + +  SP                        K++             
Sbjct: 1618 WGNGEGGLLGHGNEDVCPSP------------------------KIIEA----------- 1642

Query: 256  WEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFP-------- 307
                 ++G+ V  I CG  HSLVL +N  + S G N  GQLG +K+   +F         
Sbjct: 1643 -----LKGLNVDFIVCGGLHSLVLTKNRQVYSWGRNEGGQLGIDKK---LFTNEKCYLTT 1694

Query: 308  ---VDINFHPV---SISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGR-MGPDN 360
               V  N   V    I++G  HSLA+       + G   G   WG+N + Q+G  M  D 
Sbjct: 1695 PKRVKGNLEGVGVIQIAAGEAHSLALA------LNGQVYG---WGYNMNGQIGLGMQTDT 1745

Query: 361  VPL 363
             P+
Sbjct: 1746 YPV 1748


>gi|312282233|dbj|BAJ33982.1| unnamed protein product [Thellungiella halophila]
          Length = 440

 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 95/354 (26%), Positives = 153/354 (43%), Gaps = 67/354 (18%)

Query: 23  SASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPS-DVTSVSAGHYHSLAVTN 81
           S S   V S+G G  G LG      G   D + P  +  L    +  ++ G  H LAVT 
Sbjct: 83  SESRMEVYSWGWGDFGRLG-----HGNSSDLFTPLPIKALHGIRIKQIACGDSHCLAVTM 137

Query: 82  NGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLW 141
            G V +WGRN   QLG G  E       P++++  + + +    A    ++A+ +DG L+
Sbjct: 138 EGEVQSWGRNQNGQLGLGDTEDSLV---PQKIQAFEGIRIKMVAAGAEHTAAVTEDGDLY 194

Query: 142 VWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSAD 201
            WG  + G LGLG D  + +VP RV +  GEK+  V+ GW H ++ +  G L+ +G+S  
Sbjct: 195 GWGWGRYGNLGLG-DRNDRLVPERVTSAGGEKMSMVACGWRHTISVSYSGALYTYGWSKY 253

Query: 202 GRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLV 261
           G++G+    LE   +   +       + + +S I +                        
Sbjct: 254 GQLGH--GDLEDHLVPHKL-------EALGNSVISQ------------------------ 280

Query: 262 EGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINF----HPVSI 317
                  I+ G+ H++ L  +G L   G N +GQ+G         PV +        V +
Sbjct: 281 -------ISGGWRHTMALTSDGKLYGWGWNKFGQVGVGNNLDQCSPVQVRIPDDQKVVQV 333

Query: 318 SSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPD---NVPLVVEGL 368
           S G  H+LA+ E  +         + +WG   + QLG +G     N P ++E L
Sbjct: 334 SCGWRHTLAVTERNN---------VFAWGRGTNGQLG-IGESLDRNFPKIIEAL 377



 Score = 87.0 bits (214), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 92/349 (26%), Positives = 138/349 (39%), Gaps = 110/349 (31%)

Query: 63  PSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNV- 121
           P  V  +SAG  HS+A+ +   V +WGR  + QLG G  E R +   P ++  LD   + 
Sbjct: 14  PRRVLIISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRLS---PTQLSALDDHQIV 70

Query: 122 ---CAAFASGVVSS-----------------------------------------AIGD- 136
              C A  +   S                                          A GD 
Sbjct: 71  SVTCGADHTVAYSESRMEVYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIACGDS 130

Query: 137 -------DGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTE 189
                  +G +  WG+++ GQLGLG D  +++VP +++A  G +I  V+ G  H  A TE
Sbjct: 131 HCLAVTMEGEVQSWGRNQNGQLGLG-DTEDSLVPQKIQAFEGIRIKMVAAGAEHTAAVTE 189

Query: 190 DGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKE 249
           DG L+GWG+   GR GNLG       L    DR                +++ S G EK 
Sbjct: 190 DGDLYGWGW---GRYGNLG-------LGDRNDRLV-------------PERVTSAGGEKM 226

Query: 250 KYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVD 309
                              +ACG+ H++ +  +G L + G + YGQLG    +  + P  
Sbjct: 227 SM-----------------VACGWRHTISVSYSGALYTYGWSKYGQLGHGDLEDHLVPHK 269

Query: 310 I----NFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLG 354
           +    N     IS G  H++A+              +  WGWN+  Q+G
Sbjct: 270 LEALGNSVISQISGGWRHTMALTSDGK---------LYGWGWNKFGQVG 309



 Score = 79.0 bits (193), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 66/215 (30%), Positives = 103/215 (47%), Gaps = 23/215 (10%)

Query: 32  FGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTS-VSAGHYHSLAVTNNGAVWAWGR 90
           +G G  G LGL     G   D   P RV     +  S V+ G  H+++V+ +GA++ +G 
Sbjct: 196 WGWGRYGNLGL-----GDRNDRLVPERVTSAGGEKMSMVACGWRHTISVSYSGALYTYGW 250

Query: 91  NNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQ 150
           +   QLG G LE       P ++E L    +         + A+  DG L+ WG +K GQ
Sbjct: 251 SKYGQLGHGDLEDHLV---PHKLEALGNSVISQISGGWRHTMALTSDGKLYGWGWNKFGQ 307

Query: 151 LGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIG----- 205
           +G+G ++ +   P +V     +K+V+VS GW H LA TE   +F WG   +G++G     
Sbjct: 308 VGVGNNLDQC-SPVQVRIPDDQKVVQVSCGWRHTLAVTERNNVFAWGRGTNGQLGIGESL 366

Query: 206 --NLGKALESSPLDSNIDRSSESDQEISSSTIEKA 238
             N  K +E+  +D        S Q I SS  + +
Sbjct: 367 DRNFPKIIEALSVD------GASGQHIESSNFDPS 395



 Score = 45.8 bits (107), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 57/231 (24%), Positives = 89/231 (38%), Gaps = 36/231 (15%)

Query: 157 ITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPL 216
           +TE +V   V      +++ +S G  H++A      +  WG   DG++G+       SP 
Sbjct: 1   MTEEMVADEVTPPP-RRVLIISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRLSP- 58

Query: 217 DSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKY--------------MPIIWEPFLVE 262
                 S+  D +I S T      +       E Y                 ++ P  ++
Sbjct: 59  ---TQLSALDDHQIVSVTCGADHTVAYSESRMEVYSWGWGDFGRLGHGNSSDLFTPLPIK 115

Query: 263 ---GVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDIN-FHPVSI- 317
              G+ +  IACG  H L +   G + S G N  GQLG    +  + P  I  F  + I 
Sbjct: 116 ALHGIRIKQIACGDSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGIRIK 175

Query: 318 --SSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPDNVPLVVE 366
             ++G  H+ A+ E            +  WGW R   LG +G  N  LV E
Sbjct: 176 MVAAGAEHTAAVTEDGD---------LYGWGWGRYGNLG-LGDRNDRLVPE 216


>gi|428671737|gb|EKX72652.1| Regulator of chromosome condensation RCC1 domain containing protein
           [Babesia equi]
          Length = 1655

 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 95/351 (27%), Positives = 165/351 (47%), Gaps = 48/351 (13%)

Query: 55  EPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVE 114
           EP  +    S +  ++ G  H+LAVT NG +++WG N+  QLG G L SR     P+ V 
Sbjct: 504 EPCLLNSFSSKIKRIACGSNHTLAVTVNGLLFSWGCNDNGQLGLGDLRSRVF---PEHVT 560

Query: 115 GLDQ-VNVCAAF-ASGVVSSA-----IGDD-GSLWVWGKSKRGQLGLGKDITEAIV-PSR 165
            ++  +NV A    S  +SS+     I D+ G++W++G S  G+LGLG+  + +++ P  
Sbjct: 561 SIENAINVYAGVDNSCCISSSSHEEFINDEYGTMWMFGSSCGGKLGLGEGFSSSVMTPRE 620

Query: 166 VEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRI--GNLGKALESSPLDSNIDRS 223
           + +++G  I+KV+ G  H +A T DG L+  G    GR+  G++  +L  + + +++   
Sbjct: 621 IRSISG--ILKVALGSIHTIALTHDGLLYSCGAGTSGRLGTGSISNSLVFTLVQTDVKFI 678

Query: 224 SESDQEISSSTIEKAQKLVSEGMEKEKYMPI----IWEPFLVEGV-------EVVDIACG 272
             +     S  I     L   G  + KY+PI    I  P ++  +       +V  +   
Sbjct: 679 DVAVGSSHSLAISLDNNLYGWG--EGKYLPIDGDEILVPTMISTLPSPSGVCKVSSVVAS 736

Query: 273 FDHSLVLGRNGVLLSCGSNVYGQLG------REKQDMGMFPVDINFHPVSISSGLGHSLA 326
            +H+LVL R+G +++ G N +GQLG          D    P  +     ++S       +
Sbjct: 737 CNHTLVLARSGYIVAWGDNKFGQLGIKTASNHSATDFITVPSIVLLEDSAVSIATSKYFS 796

Query: 327 ICEVRSSNVTGGARGIVSWGWNRSSQLG------RMGPDNVPLVVEGLEGE 371
           +C     N  G A    +WG     +LG      ++  D  P+V   + G+
Sbjct: 797 VCY----NSKGDA---FAWGLASDDRLGIGDTKEKIVFDPSPIVTSAMIGD 840



 Score = 81.3 bits (199), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 57/180 (31%), Positives = 95/180 (52%), Gaps = 11/180 (6%)

Query: 23  SASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRV---PGLPSDVTSVSAGHYHSLAV 79
           + S  ++ S+G G+ G LG     TG   + + P++V         +T+  AG  HS+A+
Sbjct: 181 TTSNGSLYSWGIGAFGVLG-----TGNINNNFTPSKVVFNSNAEVFITTCVAGSRHSVAL 235

Query: 80  TNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGS 139
             +G VW+WG     +LG G  +S   +  P  ++      +         ++ I   GS
Sbjct: 236 DRDGRVWSWGYGGNGRLGLGNTKS---YYSPAMIKIFGGYEISFISCGDSHTACIDRFGS 292

Query: 140 LWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYS 199
           ++ WG +K GQLGLGK +++ + P+ VE+L+G  I +VS G G+ LA +  G ++ WGYS
Sbjct: 293 VYTWGSAKSGQLGLGKILSDVLEPTIVESLSGTPITQVSCGTGYTLALSSSGSIYQWGYS 352



 Score = 40.4 bits (93), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 51/217 (23%), Positives = 85/217 (39%), Gaps = 40/217 (18%)

Query: 127 SGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALA 186
           S   +++ G   ++  WGK     LG G ++  +  P  V    G+ +V+VS G  H+  
Sbjct: 43  SSKFNNSTGSYKNVLSWGKISFNCLGQGVNVATSESPGVVPFFTGKNVVQVSCGDYHSAV 102

Query: 187 --------QTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKA 238
                       G +F +G   +GR+G              ID  SE  +E S +     
Sbjct: 103 LVVPNNRDHKSPGTVFTFGLGNNGRLGYY------------IDDDSERRKEKSDTD---- 146

Query: 239 QKLVSEGMEKEKYMPIIWEPFLVEGVE--VVDIACGFDHSLVLGRNGVLLSCGSNVYGQL 296
                   E     P+     L  G++  V  ++CG +H+L+   NG L S G   +G L
Sbjct: 147 --------EPSWCTPVPQPVGLSIGLKNAVTSVSCGANHTLITTSNGSLYSWGIGAFGVL 198

Query: 297 GREKQDMGMFPVDINFHP------VSISSGLGHSLAI 327
           G    +    P  + F+        +  +G  HS+A+
Sbjct: 199 GTGNINNNFTPSKVVFNSNAEVFITTCVAGSRHSVAL 235



 Score = 38.5 bits (88), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 67/268 (25%), Positives = 99/268 (36%), Gaps = 67/268 (25%)

Query: 56  PTRVPGLP-SDVTSVSAGHYHS--LAVTNN------GAVWAWGRNNEVQLGRGA------ 100
           P  VP     +V  VS G YHS  L V NN      G V+ +G  N  +LG         
Sbjct: 79  PGVVPFFTGKNVVQVSCGDYHSAVLVVPNNRDHKSPGTVFTFGLGNNGRLGYYIDDDSER 138

Query: 101 LESRATWNDPKRVEGLDQ-VNVCAAFASGVVSSAIG--------DDGSLWVWGKSKRGQL 151
            + ++  ++P     + Q V +     + V S + G         +GSL+ WG    G L
Sbjct: 139 RKEKSDTDEPSWCTPVPQPVGLSIGLKNAVTSVSCGANHTLITTSNGSLYSWGIGAFGVL 198

Query: 152 GLGKDITEAIVPSRV--EALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGK 209
           G G +I     PS+V   + A   I     G  H++A   DG+++ WG            
Sbjct: 199 GTG-NINNNFTPSKVVFNSNAEVFITTCVAGSRHSVALDRDGRVWSWG------------ 245

Query: 210 ALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDI 269
                                           +  G  K  Y P + + F   G E+  I
Sbjct: 246 --------------------------YGGNGRLGLGNTKSYYSPAMIKIF--GGYEISFI 277

Query: 270 ACGFDHSLVLGRNGVLLSCGSNVYGQLG 297
           +CG  H+  + R G + + GS   GQLG
Sbjct: 278 SCGDSHTACIDRFGSVYTWGSAKSGQLG 305


>gi|336116892|ref|YP_004571659.1| hypothetical protein MLP_12420 [Microlunatus phosphovorus NM-1]
 gi|334684671|dbj|BAK34256.1| hypothetical protein MLP_12420 [Microlunatus phosphovorus NM-1]
          Length = 508

 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 99/330 (30%), Positives = 143/330 (43%), Gaps = 68/330 (20%)

Query: 54  YEPTRVPGLPS-DVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKR 112
           + P+ +P L    V+++  G + SLA+ N+G+VW+WGRN+  QLG G  E+R   + P  
Sbjct: 167 FAPSPMPYLDQVGVSAIDGGGWFSLALLNDGSVWSWGRNDWAQLGDGTKETR---HAPVD 223

Query: 113 VEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKD-ITEAIVPSRVEALAG 171
           V  L +  V A  A G  S A+  DG++W WG +   QLG G        +P +VE L+G
Sbjct: 224 VMHLARFGVKAIAAGGWTSLALLKDGTVWSWGANDWRQLGAGDTGFNAHTIPVKVEGLSG 283

Query: 172 EKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEIS 231
              V +  GW H+LA  EDG ++ WG+   G++G+                 + SD   +
Sbjct: 284 VTAVDIG-GW-HSLALREDGTVWSWGHGHQGQLGD----------------GTNSDHNAA 325

Query: 232 SSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSN 291
           +         V  G+                GV+ V  + G+ HSL L R+G + S G N
Sbjct: 326 A---------VVPGL---------------SGVKAV--SAGYRHSLALLRDGTVWSWGYN 359

Query: 292 VYGQLGREKQDMGMFPVDINFHPVSISSGLGHSLAICEVRSSNVTGGAR---------GI 342
             GQLG         PV +        + LG  +      SSNV               +
Sbjct: 360 AQGQLGDGTNTNRNTPVKV--------ASLGGRVKAIAASSSNVFHDPSFSLALLEDGTV 411

Query: 343 VSWGWNRSSQL--GRMGPDNVPLVVEGLEG 370
            SWG N   QL  G     N P+ V  L G
Sbjct: 412 WSWGTNDWHQLGDGTNTSRNTPVKVSDLSG 441



 Score = 90.9 bits (224), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 89/285 (31%), Positives = 139/285 (48%), Gaps = 34/285 (11%)

Query: 66  VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAF 125
           V +++AG + SLA+  +G VW+WG N+  QLG G     A    P +VEGL    V A  
Sbjct: 232 VKAIAAGGWTSLALLKDGTVWSWGANDWRQLGAGDTGFNAH-TIPVKVEGLS--GVTAVD 288

Query: 126 ASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHAL 185
             G  S A+ +DG++W WG   +GQLG G + ++    + V  L+G K   VS G+ H+L
Sbjct: 289 IGGWHSLALREDGTVWSWGHGHQGQLGDGTN-SDHNAAAVVPGLSGVK--AVSAGYRHSL 345

Query: 186 AQTEDGKLFGWGYSADGRIGNLGKALESSPLD--------SNIDRSSES---DQEISSST 234
           A   DG ++ WGY+A G++G+      ++P+           I  SS +   D   S + 
Sbjct: 346 ALLRDGTVWSWGYNAQGQLGDGTNTNRNTPVKVASLGGRVKAIAASSSNVFHDPSFSLAL 405

Query: 235 IEKAQ---------KLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVL 285
           +E              + +G    +  P+  +   + GV+   IA G  HSL L ++G +
Sbjct: 406 LEDGTVWSWGTNDWHQLGDGTNTSRNTPV--KVSDLSGVKA--IAPGGRHSLALLKDGTV 461

Query: 286 LSCGSNVYGQLGR--EKQDMGMFPVDIN--FHPVSISSGLGHSLA 326
              G+N +GQ+G      D    PV I    H  +I++G  HS+A
Sbjct: 462 WGWGANDHGQVGTGDGTPDRYAAPVKIEGISHVKAIAAGGWHSIA 506



 Score = 89.0 bits (219), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 72/184 (39%), Positives = 100/184 (54%), Gaps = 18/184 (9%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAW 88
           V S+G G QG LG      G   D      VPGL S V +VSAG+ HSLA+  +G VW+W
Sbjct: 303 VWSWGHGHQGQLG-----DGTNSDHNAAAVVPGL-SGVKAVSAGYRHSLALLRDGTVWSW 356

Query: 89  GRNNEVQLGRGALESRATWNDPKRVEGL-DQVNVCAAFASGV-----VSSAIGDDGSLWV 142
           G N + QLG G   +R   N P +V  L  +V   AA +S V      S A+ +DG++W 
Sbjct: 357 GYNAQGQLGDGTNTNR---NTPVKVASLGGRVKAIAASSSNVFHDPSFSLALLEDGTVWS 413

Query: 143 WGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADG 202
           WG +   QLG G + T    P +V  L+G K   ++ G  H+LA  +DG ++GWG +  G
Sbjct: 414 WGTNDWHQLGDGTN-TSRNTPVKVSDLSGVK--AIAPGGRHSLALLKDGTVWGWGANDHG 470

Query: 203 RIGN 206
           ++G 
Sbjct: 471 QVGT 474



 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 82/291 (28%), Positives = 116/291 (39%), Gaps = 59/291 (20%)

Query: 86  WAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGK 145
           W WG+N+  +LG G  + R     P  +  LDQV V A    G  S A+ +DGS+W WG+
Sbjct: 148 WVWGQNDHGELGDGTNKRRFA---PSPMPYLDQVGVSAIDGGGWFSLALLNDGSVWSWGR 204

Query: 146 SKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIG 205
           +   QLG G   T    P  V  LA   +  ++ G   +LA  +DG ++ WG +   ++G
Sbjct: 205 NDWAQLGDGTKETRH-APVDVMHLARFGVKAIAAGGWTSLALLKDGTVWSWGANDWRQLG 263

Query: 206 NLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVE 265
                                D   ++ TI                      P  VEG+ 
Sbjct: 264 -------------------AGDTGFNAHTI----------------------PVKVEGLS 282

Query: 266 -VVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGR-EKQDMGMFPVDINFHPV-SISSGLG 322
            V  +  G  HSL L  +G + S G    GQLG     D     V      V ++S+G  
Sbjct: 283 GVTAVDIGGWHSLALREDGTVWSWGHGHQGQLGDGTNSDHNAAAVVPGLSGVKAVSAGYR 342

Query: 323 HSLAICEVRSSNVTGGARGIVSWGWNRSSQL--GRMGPDNVPLVVEGLEGE 371
           HSLA+    +         + SWG+N   QL  G     N P+ V  L G 
Sbjct: 343 HSLALLRDGT---------VWSWGYNAQGQLGDGTNTNRNTPVKVASLGGR 384



 Score = 59.3 bits (142), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 49/156 (31%), Positives = 74/156 (47%), Gaps = 14/156 (8%)

Query: 32  FGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRN 91
            GDG+      P  +  +GG      RV  + +  ++V      SLA+  +G VW+WG N
Sbjct: 364 LGDGTNTNRNTPVKVASLGG------RVKAIAASSSNVFHDPSFSLALLEDGTVWSWGTN 417

Query: 92  NEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQL 151
           +  QLG G   SR   N P +V  L  V   A    G  S A+  DG++W WG +  GQ+
Sbjct: 418 DWHQLGDGTNTSR---NTPVKVSDLSGVKAIAP--GGRHSLALLKDGTVWGWGANDHGQV 472

Query: 152 GLGKDITEAI-VPSRVEALAGEKIVKVSFGWGHALA 186
           G G    +    P ++E ++  K +    GW H++A
Sbjct: 473 GTGDGTPDRYAAPVKIEGISHVKAIAAG-GW-HSIA 506


>gi|88855032|ref|ZP_01129697.1| hypothetical protein A20C1_04101 [marine actinobacterium PHSC20C1]
 gi|88815560|gb|EAR25417.1| hypothetical protein A20C1_04101 [marine actinobacterium PHSC20C1]
          Length = 524

 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 84/278 (30%), Positives = 124/278 (44%), Gaps = 35/278 (12%)

Query: 62  LPSDVT--SVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQV 119
           +PS VT   V AG +HSLAV +NG +++WG N   QLG G   + +    P +V      
Sbjct: 152 VPSGVTISQVMAGGFHSLAVGSNGDIYSWGYNRSGQLGDGTTLASSV---PLKVS----- 203

Query: 120 NVCAAFASGVVSS----------AIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEAL 169
               A  +GV  S          AIG +G  + WG+++ GQLG+G  I+    P+ V A 
Sbjct: 204 --AGAVPAGVTFSQVSAGDRHSLAIGSNGKTYAWGEARGGQLGIGS-ISRTPAPALVSAP 260

Query: 170 AGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPL---------DSNI 220
           AG    +VS G  H+LA   DGK + WG +  G++GN       +P+          + +
Sbjct: 261 AGVSFTQVSAGDLHSLAVGSDGKAYAWGNNDSGQLGNATTTSSLAPVLVSPMGGLAVTQV 320

Query: 221 DRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLV---EGVEVVDIACGFDHSL 277
              ++    I +     A  L   G      +     P +V   +GV    I  G  HSL
Sbjct: 321 SAGADHSLAIGADGNAYAWGLNVNGQLGNNTITTSTVPVMVTAPDGVTFTRIEAGGLHSL 380

Query: 278 VLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFHPV 315
               +    + G+N +GQLG    D  + PV I+  PV
Sbjct: 381 TAASDENTYTWGANSFGQLGNGTSDGSLVPVAISRFPV 418



 Score = 98.2 bits (243), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 95/326 (29%), Positives = 141/326 (43%), Gaps = 41/326 (12%)

Query: 67  TSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEG---LDQVNVCA 123
           T VSAG  HSLAV ++G  +AWGRN + +LG G     +    P  V        V +  
Sbjct: 104 TQVSAGADHSLAVGSDGNAYAWGRNTDGRLGNGTSTGSSV---PLLVSAGAVPSGVTISQ 160

Query: 124 AFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEA---LAGEKIVKVSFG 180
             A G  S A+G +G ++ WG ++ GQLG G  +  + VP +V A    AG    +VS G
Sbjct: 161 VMAGGFHSLAVGSNGDIYSWGYNRSGQLGDGTTLASS-VPLKVSAGAVPAGVTFSQVSAG 219

Query: 181 WGHALAQTEDGKLFGWGYSADGRIG------NLGKALESSPLDSNIDRSSESD-QEISSS 233
             H+LA   +GK + WG +  G++G          AL S+P   +  + S  D   ++  
Sbjct: 220 DRHSLAIGSNGKTYAWGEARGGQLGIGSISRTPAPALVSAPAGVSFTQVSAGDLHSLAVG 279

Query: 234 TIEKAQK-------LVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLL 286
           +  KA          +          P++  P  + G+ V  ++ G DHSL +G +G   
Sbjct: 280 SDGKAYAWGNNDSGQLGNATTTSSLAPVLVSP--MGGLAVTQVSAGADHSLAIGADGNAY 337

Query: 287 SCGSNVYGQLGREKQDMGMFPVDIN----FHPVSISSGLGHSLAICEVRSSNVTGGARGI 342
           + G NV GQLG         PV +          I +G  HSL      ++         
Sbjct: 338 AWGLNVNGQLGNNTITTSTVPVMVTAPDGVTFTRIEAGGLHSLTAASDENT--------- 388

Query: 343 VSWGWNRSSQLGRMGPDN--VPLVVE 366
            +WG N   QLG    D   VP+ + 
Sbjct: 389 YTWGANSFGQLGNGTSDGSLVPVAIS 414



 Score = 75.5 bits (184), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 74/234 (31%), Positives = 94/234 (40%), Gaps = 60/234 (25%)

Query: 131 SSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTED 190
           S A+G DG+++ WG +  GQLG    I  + VP  V    G    +VS G  H+LA   D
Sbjct: 61  SLAMGSDGNIYAWGYNSSGQLG-NNSILNSSVPVLVSTPDGVTFTQVSAGADHSLAVGSD 119

Query: 191 GKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEK 250
           G  + WG + DGR+GN      S PL                        LVS G     
Sbjct: 120 GNAYAWGRNTDGRLGNGTSTGSSVPL------------------------LVSAGA---- 151

Query: 251 YMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGRE---------KQ 301
                    +  GV +  +  G  HSL +G NG + S G N  GQLG           K 
Sbjct: 152 ---------VPSGVTISQVMAGGFHSLAVGSNGDIYSWGYNRSGQLGDGTTLASSVPLKV 202

Query: 302 DMGMFPVDINFHPVSISSGLGHSLAICEVRSSNVTGGARG-IVSWGWNRSSQLG 354
             G  P  + F  V  S+G  HSLAI          G+ G   +WG  R  QLG
Sbjct: 203 SAGAVPAGVTFSQV--SAGDRHSLAI----------GSNGKTYAWGEARGGQLG 244


>gi|410918052|ref|XP_003972500.1| PREDICTED: LOW QUALITY PROTEIN: probable E3 ubiquitin-protein
           ligase HERC3-like [Takifugu rubripes]
          Length = 1031

 Score = 99.4 bits (246), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 82/293 (27%), Positives = 127/293 (43%), Gaps = 54/293 (18%)

Query: 66  VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAF 125
           +T VS G  HSLAV   G V+AWG   E QLG G  E+      P+ ++ L    +    
Sbjct: 85  ITLVSCGQAHSLAVNEQGQVFAWGAGEEGQLGLGTTETAV--RIPRLIKRLCDHRIAQVM 142

Query: 126 ASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHAL 185
                  A+  DG L+ WG++  GQLGLGK     + P  +++LAG  + K++ G  H+ 
Sbjct: 143 CGNQHCIALSKDGQLFTWGQNTSGQLGLGKGEPSKLFPQPLKSLAGIPLAKITAGGDHSF 202

Query: 186 AQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEG 245
           A +  G +FGWG +  G++G          L+   DR+     +   S            
Sbjct: 203 ALSLSGAVFGWGKNKAGQLG----------LNDIQDRAVPCHIKFLRSQ----------- 241

Query: 246 MEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGM 305
                              +VV I+CG +H+  L ++G L + G   +GQLG       +
Sbjct: 242 -------------------KVVHISCGEEHTAALTKDGGLFTFGDGSWGQLGHGSTANEL 282

Query: 306 FP---VDINFHPVS-ISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLG 354
            P   +++    VS I+ G  H+LA            + G+ ++G N   QLG
Sbjct: 283 LPRRVLELMGTEVSQITCGRHHTLAF--------APSSGGVYAFGCNSHGQLG 327



 Score = 95.5 bits (236), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 87/292 (29%), Positives = 130/292 (44%), Gaps = 59/292 (20%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGL-----PSDVTSVSAGHYHSLAVTNNG 83
           V ++G G +G LGL T+ T V        R+P L        +  V  G+ H +A++ +G
Sbjct: 104 VFAWGAGEEGQLGLGTTETAV--------RIPRLIKRLCDHRIAQVMCGNQHCIALSKDG 155

Query: 84  AVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVW 143
            ++ WG+N   QLG G  E    +  P+ ++ L  + +    A G  S A+   G+++ W
Sbjct: 156 QLFTWGQNTSGQLGLGKGEPSKLF--PQPLKSLAGIPLAKITAGGDHSFALSLSGAVFGW 213

Query: 144 GKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGR 203
           GK+K GQLGL  DI +  VP  ++ L  +K+V +S G  H  A T+DG LF +G   DG 
Sbjct: 214 GKNKAGQLGLN-DIQDRAVPCHIKFLRSQKVVHISCGEEHTAALTKDGGLFTFG---DGS 269

Query: 204 IGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEG 263
            G LG                       S+  E   + V E M                G
Sbjct: 270 WGQLGHG---------------------STANELLPRRVLELM----------------G 292

Query: 264 VEVVDIACGFDHSLVLG-RNGVLLSCGSNVYGQLGR--EKQDMGMFPVDINF 312
            EV  I CG  H+L     +G + + G N +GQLG      D   +P+  +F
Sbjct: 293 TEVSQITCGRHHTLAFAPSSGGVYAFGCNSHGQLGTGVLSADKSPYPLKTSF 344



 Score = 54.3 bits (129), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 58/234 (24%), Positives = 99/234 (42%), Gaps = 31/234 (13%)

Query: 140 LWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYS 199
           +  WGK+K GQLG+G +      P       G  + ++  G  H++    DG ++  G +
Sbjct: 1   MLCWGKAKDGQLGIGVERNPMFEPRNCNVFTGRGLKEIVCGGQHSVFLLHDGSVYTCGSN 60

Query: 200 ADGRIGNLGKALESS---PLDSNIDRSSESDQEISSSTIEKAQKLV----SEGM----EK 248
           + G++G+    +       LD+         Q  S +  E+ Q        EG       
Sbjct: 61  SCGQLGHNKPGITPEFVGALDTQKITLVSCGQAHSLAVNEQGQVFAWGAGEEGQLGLGTT 120

Query: 249 EKYMPIIWEPFLVEGV---EVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREK-QDMG 304
           E  + I   P L++ +    +  + CG  H + L ++G L + G N  GQLG  K +   
Sbjct: 121 ETAVRI---PRLIKRLCDHRIAQVMCGNQHCIALSKDGQLFTWGQNTSGQLGLGKGEPSK 177

Query: 305 MFPVDIN----FHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLG 354
           +FP  +          I++G  HS A+      +++G   G   WG N++ QLG
Sbjct: 178 LFPQPLKSLAGIPLAKITAGGDHSFAL------SLSGAVFG---WGKNKAGQLG 222


>gi|393202066|ref|YP_006463908.1| alpha-tubulin suppressor [Solibacillus silvestris StLB046]
 gi|327441397|dbj|BAK17762.1| alpha-tubulin suppressor [Solibacillus silvestris StLB046]
          Length = 797

 Score = 99.4 bits (246), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 83/275 (30%), Positives = 126/275 (45%), Gaps = 71/275 (25%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAW 88
           V ++G  +QG LG  T+       +  P +V G+ S + ++SAG YH+LAV  NG VWAW
Sbjct: 110 VWTWGRNNQGQLGYTTA----NSFSNLPAKVTGITSKIIAISAGEYHTLAVDENGQVWAW 165

Query: 89  GRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGD--------DGSL 140
           GRN+  Q+G           +P     L  V VC    SG+++ A GD        DG++
Sbjct: 166 GRNDYGQIGTDC--------NP----ALAHVQVCG--VSGIIAVAAGDNHSVALKSDGTV 211

Query: 141 WVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGK-LFGWGYS 199
           W WG++  GQLG G+       P+ V  L+   IV +S G  H LA  +D   ++ WG++
Sbjct: 212 WAWGRNTVGQLGNGETTDINTNPTAVPGLS--NIVDISAGANHTLALKQDSTSIYAWGFN 269

Query: 200 ADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPF 259
           + G++G+ G  LES                       K + +  EGM K K         
Sbjct: 270 SSGQLGDGG--LES-----------------------KLRPIQVEGMNKVK--------- 295

Query: 260 LVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYG 294
                    IA G +HS+ +  +G + + G +  G
Sbjct: 296 --------TIAAGNNHSIAIKEDGTVWTWGRHTSG 322



 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 84/308 (27%), Positives = 145/308 (47%), Gaps = 65/308 (21%)

Query: 65  DVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAA 124
           ++ +++AG  H++A+  NG VW WGRNN+ QLG     S +  N P +V G+    + A 
Sbjct: 90  NIKAIAAGSNHTVALDRNGEVWTWGRNNQGQLGYTTANSFS--NLPAKVTGITS-KIIAI 146

Query: 125 FASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHA 184
            A    + A+ ++G +W WG++  GQ  +G D   A+   +V  ++G  I+ V+ G  H+
Sbjct: 147 SAGEYHTLAVDENGQVWAWGRNDYGQ--IGTDCNPALAHVQVCGVSG--IIAVAAGDNHS 202

Query: 185 LAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSE 244
           +A   DG ++ WG +  G++GN     E++ +++N                         
Sbjct: 203 VALKSDGTVWAWGRNTVGQLGN----GETTDINTN------------------------- 233

Query: 245 GMEKEKYMPIIWEPFLVEGV-EVVDIACGFDHSLVLGRNGV-LLSCGSNVYGQLGREKQD 302
                        P  V G+  +VDI+ G +H+L L ++   + + G N  GQLG    +
Sbjct: 234 -------------PTAVPGLSNIVDISAGANHTLALKQDSTSIYAWGFNSSGQLGDGGLE 280

Query: 303 MGMFPVDIN-FHPV-SISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPDN 360
             + P+ +   + V +I++G  HS+AI E           G V W W R +  G     +
Sbjct: 281 SKLRPIQVEGMNKVKTIAAGNNHSIAIKE----------DGTV-WTWGRHTS-GTSSNRS 328

Query: 361 VPLVVEGL 368
            P+ V+GL
Sbjct: 329 TPIQVKGL 336



 Score = 88.6 bits (218), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 80/306 (26%), Positives = 141/306 (46%), Gaps = 60/306 (19%)

Query: 69  VSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASG 128
           V  G  H + +  +G+VW WG ++  QLG     + +     ++ +G   +N+ A  A  
Sbjct: 40  VDVGKNHFIVLKEDGSVWGWGDHSYGQLGANGSNTSSPI-PIQKADGNRLLNIKAIAAGS 98

Query: 129 VVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQT 188
             + A+  +G +W WG++ +GQLG     + + +P++V  +   KI+ +S G  H LA  
Sbjct: 99  NHTVALDRNGEVWTWGRNNQGQLGYTTANSFSNLPAKVTGIT-SKIIAISAGEYHTLAVD 157

Query: 189 EDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEK 248
           E+G+++ WG +  G+IG      + +P  +++                            
Sbjct: 158 ENGQVWAWGRNDYGQIGT-----DCNPALAHVQ--------------------------- 185

Query: 249 EKYMPIIWEPFLVEGVE-VVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGR-EKQDMGMF 306
                       V GV  ++ +A G +HS+ L  +G + + G N  GQLG  E  D+   
Sbjct: 186 ------------VCGVSGIIAVAAGDNHSVALKSDGTVWAWGRNTVGQLGNGETTDINTN 233

Query: 307 PVDIN--FHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPDNV--P 362
           P  +    + V IS+G  H+LA+ +  +S        I +WG+N S QLG  G ++   P
Sbjct: 234 PTAVPGLSNIVDISAGANHTLALKQDSTS--------IYAWGFNSSGQLGDGGLESKLRP 285

Query: 363 LVVEGL 368
           + VEG+
Sbjct: 286 IQVEGM 291



 Score = 48.9 bits (115), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 46/173 (26%), Positives = 76/173 (43%), Gaps = 57/173 (32%)

Query: 56  PTRVPGLPSDVTSVSAGHYHSLAVTNNG-AVWAWGRNNEVQLGRGALESRATWNDPKRVE 114
           PT VPGL S++  +SAG  H+LA+  +  +++AWG N+  QLG G LES+     P +VE
Sbjct: 234 PTAVPGL-SNIVDISAGANHTLALKQDSTSIYAWGFNSSGQLGDGGLESKLR---PIQVE 289

Query: 115 GLDQVNVCAA-------------------FASGVVSS----------------------- 132
           G+++V   AA                     SG  S+                       
Sbjct: 290 GMNKVKTIAAGNNHSIAIKEDGTVWTWGRHTSGTSSNRSTPIQVKGLSSAIAIGGGGDSD 349

Query: 133 ----AIGDDGSLWVWGKSKRG---QLGLGKDIT---EAIVPSRVEALAGEKIV 175
               A+ +DG++W W K+      +L + K ++   E + PS    + G +++
Sbjct: 350 SYILAVKEDGTVWQWDKASSDSTTKLPIFKQVSGIDEVMKPSEFPFVQGSQVL 402


>gi|432930911|ref|XP_004081521.1| PREDICTED: RCC1 and BTB domain-containing protein 1-like [Oryzias
           latipes]
          Length = 531

 Score = 99.4 bits (246), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 56/156 (35%), Positives = 92/156 (58%), Gaps = 5/156 (3%)

Query: 62  LPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNV 121
           L   V  V+ G +HS+A+T++G V+AWG NN  Q+G G+  ++ T   P+RV    Q  V
Sbjct: 126 LNKKVVEVACGSHHSMALTDSGEVYAWGYNNCGQVGSGSTANQPT---PRRVSSCLQNKV 182

Query: 122 CAAFASGVVSS-AIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFG 180
                 G  SS A+ D+G ++ WG +  GQLGLG +  + + P R+ AL G  ++++  G
Sbjct: 183 AVGIVCGQTSSLAVVDNGEVYGWGYNGNGQLGLGNNGNQ-LTPCRLVALQGLCVLQIVCG 241

Query: 181 WGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPL 216
           + H LA +++G L+ WG +  G++G   K+ + SP+
Sbjct: 242 YAHCLALSDEGVLYAWGSNTYGQLGTGNKSNQLSPV 277



 Score = 78.6 bits (192), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 67/246 (27%), Positives = 104/246 (42%), Gaps = 62/246 (25%)

Query: 75  HSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVV---- 130
           H L  T +G ++AWG N   QLG G              +G+  V V A   +  V    
Sbjct: 86  HVLMATEDGELFAWGHNGYSQLGNGTTN-----------QGVAPVLVSANMLNKKVVEVA 134

Query: 131 -----SSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKI-VKVSFGWGHA 184
                S A+ D G ++ WG +  GQ+G G    +   P RV +    K+ V +  G   +
Sbjct: 135 CGSHHSMALTDSGEVYAWGYNNCGQVGSGSTANQP-TPRRVSSCLQNKVAVGIVCGQTSS 193

Query: 185 LAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSE 244
           LA  ++G+++GWGY+ +G++G      + +P                        +LV+ 
Sbjct: 194 LAVVDNGEVYGWGYNGNGQLGLGNNGNQLTPC-----------------------RLVA- 229

Query: 245 GMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMG 304
                           ++G+ V+ I CG+ H L L   GVL + GSN YGQLG   +   
Sbjct: 230 ----------------LQGLCVLQIVCGYAHCLALSDEGVLYAWGSNTYGQLGTGNKSNQ 273

Query: 305 MFPVDI 310
           + PV I
Sbjct: 274 LSPVQI 279



 Score = 65.1 bits (157), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 74/265 (27%), Positives = 111/265 (41%), Gaps = 54/265 (20%)

Query: 113 VEGLDQVNVCAAFASGVVSSA-IGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAG 171
           +E L  +     F S    +  +  D  ++V G +    LG G D    IVP +++ L G
Sbjct: 15  LEELSMIRKACVFGSSANEAVYVTHDDEVFVLGLNCSNCLGTG-DSQSTIVPKKLDFLNG 73

Query: 172 EKIVKVSFGWG-HALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEI 230
            KIV +S+G G H L  TEDG+LF WG++   ++GN                   ++Q +
Sbjct: 74  RKIVSLSYGSGPHVLMATEDGELFAWGHNGYSQLGN-----------------GTTNQGV 116

Query: 231 SSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGS 290
                  A  LVS  M  +K               VV++ACG  HS+ L  +G + + G 
Sbjct: 117 -------APVLVSANMLNKK---------------VVEVACGSHHSMALTDSGEVYAWGY 154

Query: 291 NVYGQLGREKQDMGMFPVDINFHPVSISSGLGHSLA---ICEVRSSNVTGGARGIVSWGW 347
           N  GQ+G         P      P  +SS L + +A   +C   SS        +  WG+
Sbjct: 155 NNCGQVG--SGSTANQPT-----PRRVSSCLQNKVAVGIVCGQTSSLAVVDNGEVYGWGY 207

Query: 348 NRSSQ--LGRMGPDNVPLVVEGLEG 370
           N + Q  LG  G    P  +  L+G
Sbjct: 208 NGNGQLGLGNNGNQLTPCRLVALQG 232


>gi|159038540|ref|YP_001537793.1| chromosome condensation regulator RCC1 [Salinispora arenicola
           CNS-205]
 gi|157917375|gb|ABV98802.1| regulator of chromosome condensation RCC1 [Salinispora arenicola
           CNS-205]
          Length = 579

 Score = 99.4 bits (246), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 91/311 (29%), Positives = 142/311 (45%), Gaps = 36/311 (11%)

Query: 64  SDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGA-LESRATWNDPKRVEGLDQVNVC 122
           + +T+V+ G  HSLAVT+ G   AWG N   QLG G  + S +T   P  V+      V 
Sbjct: 93  TTITAVAGGAGHSLAVTSAGTALAWGDNAFGQLGDGTTIPSSST---PVAVDVPAGTTVT 149

Query: 123 AAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWG 182
           A    GV + A+   G+   WG +  GQLG G   T +  P  V   AG  I  V+ G G
Sbjct: 150 ALSGGGVHNLAVTSAGTALAWGDNFWGQLGDGS-TTRSRTPVAVNVPAGTTITAVAAGQG 208

Query: 183 HALAQTEDGKLFGWGYSADGRIGNLGKALESS-PLDSNIDR----SSESDQEISSSTIEK 237
           H+LA T  G    WG ++ G++G+ G A +SS P+ +++      ++ +   + S  +  
Sbjct: 209 HSLAVTSAGTALAWGDNSSGQLGD-GTATDSSIPVAADVPAGTTITAVAAGGLHSLALTS 267

Query: 238 AQKLVS----------EGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLS 287
              +++          +G       P+  +  +  G  V  +A G  HSL +   G +L+
Sbjct: 268 GGDVLAWGANGSGQLGDGTTTSSSTPVAVD--VPAGTTVTAVAAGGRHSLAVTSAGDVLA 325

Query: 288 CGSNVYGQLGREKQDMGMFPVDINFHP----VSISSGLGHSLAICEVRSSNVTGGARGIV 343
            G N  GQLG         PV +N        ++++G GHSLA+    ++         +
Sbjct: 326 WGDNTAGQLGDGSTTHSSTPVAVNVPAGTTITAVATGSGHSLAVTSTDTA---------L 376

Query: 344 SWGWNRSSQLG 354
           +WG N   QLG
Sbjct: 377 AWGDNTFGQLG 387



 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 75/276 (27%), Positives = 112/276 (40%), Gaps = 48/276 (17%)

Query: 64  SDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCA 123
           + +T+V+AG  HSLAVT+ G   AWG N+  QLG G     +    P   +      + A
Sbjct: 198 TTITAVAAGQGHSLAVTSAGTALAWGDNSSGQLGDGTATDSSI---PVAADVPAGTTITA 254

Query: 124 AFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGH 183
             A G+ S A+   G +  WG +  GQLG G   T +  P  V+  AG  +  V+ G  H
Sbjct: 255 VAAGGLHSLALTSGGDVLAWGANGSGQLGDGT-TTSSSTPVAVDVPAGTTVTAVAAGGRH 313

Query: 184 ALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVS 243
           +LA T  G +  WG +  G++G+      S+P+  N+                       
Sbjct: 314 SLAVTSAGDVLAWGDNTAGQLGDGSTTHSSTPVAVNVP---------------------- 351

Query: 244 EGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDM 303
                              G  +  +A G  HSL +      L+ G N +GQLG      
Sbjct: 352 ------------------AGTTITAVATGSGHSLAVTSTDTALAWGDNTFGQLGDGSTTS 393

Query: 304 GMFPVDINFHP----VSISSGLGHSLAICEVRSSNV 335
            + PV ++        +I+ G  HSLAI    S+  
Sbjct: 394 SIIPVAVDLPAGTTVTAIAGGSFHSLAIVPSTSTTT 429



 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 68/186 (36%), Positives = 93/186 (50%), Gaps = 13/186 (6%)

Query: 23  SASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTR--VPGLPSDVTSVSAGHYHSLAVT 80
           +++GTA+ ++GD S G LG      G   D+  P    VP   + +T+V+AG  HSLA+T
Sbjct: 214 TSAGTAL-AWGDNSSGQLG-----DGTATDSSIPVAADVPAG-TTITAVAAGGLHSLALT 266

Query: 81  NNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSL 140
           + G V AWG N   QLG G   S +T   P  V+      V A  A G  S A+   G +
Sbjct: 267 SGGDVLAWGANGSGQLGDGTTTSSST---PVAVDVPAGTTVTAVAAGGRHSLAVTSAGDV 323

Query: 141 WVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSA 200
             WG +  GQLG G   T +  P  V   AG  I  V+ G GH+LA T       WG + 
Sbjct: 324 LAWGDNTAGQLGDGS-TTHSSTPVAVNVPAGTTITAVATGSGHSLAVTSTDTALAWGDNT 382

Query: 201 DGRIGN 206
            G++G+
Sbjct: 383 FGQLGD 388



 Score = 75.5 bits (184), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 68/246 (27%), Positives = 100/246 (40%), Gaps = 53/246 (21%)

Query: 113 VEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGE 172
           V G+  V      A GV S+A G  G+   WG +  G+LG G   T++  P  V   AG 
Sbjct: 35  VLGVTSVGAARVLAQGVPSAAAGPPGTGLAWGTNSAGRLGDGT-TTDSSSPVSVNVPAGT 93

Query: 173 KIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISS 232
            I  V+ G GH+LA T  G    WG +A G++G+ G  + SS     +D           
Sbjct: 94  TITAVAGGAGHSLAVTSAGTALAWGDNAFGQLGD-GTTIPSSSTPVAVD----------- 141

Query: 233 STIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNV 292
                                      +  G  V  ++ G  H+L +   G  L+ G N 
Sbjct: 142 ---------------------------VPAGTTVTALSGGGVHNLAVTSAGTALAWGDNF 174

Query: 293 YGQLGREKQDMGMFPVDINFHP----VSISSGLGHSLAICEVRSSNVTGGARGIVSWGWN 348
           +GQLG         PV +N        ++++G GHSLA+    ++         ++WG N
Sbjct: 175 WGQLGDGSTTRSRTPVAVNVPAGTTITAVAAGQGHSLAVTSAGTA---------LAWGDN 225

Query: 349 RSSQLG 354
            S QLG
Sbjct: 226 SSGQLG 231



 Score = 75.1 bits (183), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 72/286 (25%), Positives = 116/286 (40%), Gaps = 32/286 (11%)

Query: 87  AWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKS 146
           AWG N+  +LG G        + P  V       + A       S A+   G+   WG +
Sbjct: 64  AWGTNSAGRLGDGTTTDS---SSPVSVNVPAGTTITAVAGGAGHSLAVTSAGTALAWGDN 120

Query: 147 KRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGN 206
             GQLG G  I  +  P  V+  AG  +  +S G  H LA T  G    WG +  G++G+
Sbjct: 121 AFGQLGDGTTIPSSSTPVAVDVPAGTTVTALSGGGVHNLAVTSAGTALAWGDNFWGQLGD 180

Query: 207 LGKALESSPLDSNIDRSSE-----SDQEISSSTIEKAQKL---------VSEGMEKEKYM 252
                  +P+  N+   +      + Q  S +       L         + +G   +  +
Sbjct: 181 GSTTRSRTPVAVNVPAGTTITAVAAGQGHSLAVTSAGTALAWGDNSSGQLGDGTATDSSI 240

Query: 253 PIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINF 312
           P+  +  +  G  +  +A G  HSL L   G +L+ G+N  GQLG         PV ++ 
Sbjct: 241 PVAAD--VPAGTTITAVAAGGLHSLALTSGGDVLAWGANGSGQLGDGTTTSSSTPVAVDV 298

Query: 313 HP----VSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLG 354
                  ++++G  HSLA+           A  +++WG N + QLG
Sbjct: 299 PAGTTVTAVAAGGRHSLAVTS---------AGDVLAWGDNTAGQLG 335


>gi|374296377|ref|YP_005046568.1| RCC1 domain-containing protein, alpha-tubulin suppressor
           [Clostridium clariflavum DSM 19732]
 gi|359825871|gb|AEV68644.1| RCC1 domain-containing protein, alpha-tubulin suppressor
           [Clostridium clariflavum DSM 19732]
          Length = 819

 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 84/305 (27%), Positives = 138/305 (45%), Gaps = 58/305 (19%)

Query: 6   SVVHNHVNVLTSRIFMRSASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSD 65
           SV  NH+  L    ++ SA  +     GDGSQ       +      + +  T+  GL ++
Sbjct: 570 SVGKNHILALKDDGYVYSAGNSYWGQLGDGSQ-------THHNSYSETFNLTKAKGL-TN 621

Query: 66  VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAF 125
           + +V+AG  HS+A+ N+G VW WG N   Q G  A  +     +P + EGL+  N+CA  
Sbjct: 622 IVAVAAGSEHSVALKNDGTVWTWGSN---QFGELAHGNDTFSLEPMQAEGLE--NICAIS 676

Query: 126 ASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHAL 185
           A    + A+ +DG++W WG +  GQLG G    +  VP +V+ L  E IVK+  G   + 
Sbjct: 677 AGNNYNLALKEDGTVWAWGDNTYGQLGNGS-TYKTNVPVQVDGL--ENIVKIIAGRDSSF 733

Query: 186 AQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEG 245
           A T+DG ++ WG +  G++G                                      +G
Sbjct: 734 AITKDGDVWAWGKNNCGQLG--------------------------------------DG 755

Query: 246 MEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGM 305
             + +  P+  + F  +G +   I  G D ++VL  +G ++  GSNV G +     D   
Sbjct: 756 TTQNRLTPVKIDAF--KGCK--SIVSGMDFTMVLMNDGTVIGVGSNVSGVMTLGFSDRSF 811

Query: 306 FPVDI 310
            P+++
Sbjct: 812 IPIEV 816



 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 116/393 (29%), Positives = 170/393 (43%), Gaps = 96/393 (24%)

Query: 28  AVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVP----GLPSDVTSVSAGHYHSLAVTNNG 83
            V ++G  S G LGL        G+A E  R+P    GL  DV  V+AG  HSLA+  +G
Sbjct: 129 TVWTWGYNSYGQLGL--------GEAGEIERIPKKIEGLE-DVIKVAAGSRHSLALKKDG 179

Query: 84  AVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVW 143
            VWAWG N   QLG    ES    N P +V+GL  V    A      S A+ DDG++W W
Sbjct: 180 TVWAWGYNYYGQLGD---ESNIRRNTPVQVKGLTGVKDIDA--GDFFSVALRDDGTVWGW 234

Query: 144 GKSKRGQLGLGKDITEAI------VPSRVEALAGEKIV------KVSFGWGH-------- 183
           G + +GQ+G G  I   +      V +  +  AG++ V      K  +GWG         
Sbjct: 235 GYNYKGQIGCGTGINSNVPLQTVGVSNITQISAGDEHVLALDKDKNVWGWGAGDKGQLGN 294

Query: 184 ----------------------------ALAQTEDGKLFGWGYSADGRIGNLGKALESSP 215
                                       + A  EDG L+ WG +  G +GN  + + SSP
Sbjct: 295 GTAASFLRIPEKLSSFTEVKSVKAGTMVSAAIKEDGTLWIWGDNTYGIMGN-SRNINSSP 353

Query: 216 L---DSNIDRSSESDQEISSS-----TI----EKAQKLVSEGMEKEKYMPIIWEPFLVEG 263
           +   D +  ++ E +Q  +++     T+    +    ++  G   +  +P +     V G
Sbjct: 354 VQRKDISGIKAVELNQYCAAALKNDGTVWTWGKNINGILGLGTALDSQIPSV-----VSG 408

Query: 264 V-EVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDIN--FHPVSISSG 320
             +V  I+CG  H  ++  +G L + G N+YGQLG    D    PV IN   +   IS G
Sbjct: 409 TGDVEVISCGKTHMAIIKSDGTLWTWGYNIYGQLGNGNVDYITEPVTINGISNISKISCG 468

Query: 321 LGHSLAICEVRSSNVTGGARGIVSWGWNRSSQL 353
             H LAI E ++         + +WG N   QL
Sbjct: 469 GKHVLAIDENKT---------LWAWGNNDYLQL 492



 Score = 84.3 bits (207), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 80/261 (30%), Positives = 125/261 (47%), Gaps = 34/261 (13%)

Query: 69  VSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASG 128
           V+ G YH++A+  +G VW WG N+  QLG G  E+      PK++EGL+ V   AA +  
Sbjct: 114 VACGEYHTIALKKDGTVWTWGYNSYGQLGLG--EAGEIERIPKKIEGLEDVIKVAAGSRH 171

Query: 129 VVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQT 188
             S A+  DG++W WG +  GQLG   +I     P +V+ L G K   +  G   ++A  
Sbjct: 172 --SLALKKDGTVWAWGYNYYGQLGDESNIRRN-TPVQVKGLTGVK--DIDAGDFFSVALR 226

Query: 189 EDGKLFGWGYSADGRIGNLGKALESS-PLD----SNIDRSSESDQEISSSTIEKAQKLVS 243
           +DG ++GWGY+  G+IG  G  + S+ PL     SNI + S  D+ + +  ++K + +  
Sbjct: 227 DDGTVWGWGYNYKGQIG-CGTGINSNVPLQTVGVSNITQISAGDEHVLA--LDKDKNVWG 283

Query: 244 EGMEKE---------KYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYG 294
            G   +          ++ I     L    EV  +  G   S  +  +G L   G N YG
Sbjct: 284 WGAGDKGQLGNGTAASFLRI--PEKLSSFTEVKSVKAGTMVSAAIKEDGTLWIWGDNTYG 341

Query: 295 QLGREKQDMGMFPVDINFHPV 315
            +G  +        +IN  PV
Sbjct: 342 IMGNSR--------NINSSPV 354



 Score = 77.8 bits (190), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 84/323 (26%), Positives = 139/323 (43%), Gaps = 62/323 (19%)

Query: 55  EPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQL----GRGALESRATWNDP 110
           EP  + G+ S+++ +S G  H LA+  N  +WAWG N+ +QL    G  A      +  P
Sbjct: 452 EPVTINGI-SNISKISCGGKHVLAIDENKTLWAWGNNDYLQLIDDVGLSAESGSNDYCIP 510

Query: 111 KRVEGLDQV-NVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEAL 169
             V+    V ++ AAF   +V   + +D  +W++         +  D     +P ++E L
Sbjct: 511 FAVKSEKDVKDIVAAFNRTLV---VYEDEEVWIYAAKNT----VAGDEQSVYLPYKIEGL 563

Query: 170 AGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQE 229
            G  +  VS G  H LA  +DG ++  G S  G++G+           S    +S S+  
Sbjct: 564 EG--VTDVSVGKNHILALKDDGYVYSAGNSYWGQLGD----------GSQTHHNSYSE-- 609

Query: 230 ISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCG 289
             +  + KA+ L +                      +V +A G +HS+ L  +G + + G
Sbjct: 610 --TFNLTKAKGLTN----------------------IVAVAAGSEHSVALKNDGTVWTWG 645

Query: 290 SNVYGQLGREKQDMGMFPVDINFHPVSISSGLGHSLAICEVRSSNVTGGARGIV-SWGWN 348
           SN +G+L        + P+         + GL +  AI    + N+     G V +WG N
Sbjct: 646 SNQFGELAHGNDTFSLEPMQ--------AEGLENICAISAGNNYNLALKEDGTVWAWGDN 697

Query: 349 RSSQLGR--MGPDNVPLVVEGLE 369
              QLG       NVP+ V+GLE
Sbjct: 698 TYGQLGNGSTYKTNVPVQVDGLE 720



 Score = 49.3 bits (116), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 58/201 (28%), Positives = 87/201 (43%), Gaps = 54/201 (26%)

Query: 172 EKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEIS 231
           E  V+V+ G  H +A  +DG ++ WGY++ G++G LG+A E                   
Sbjct: 109 EGFVQVACGEYHTIALKKDGTVWTWGYNSYGQLG-LGEAGE------------------- 148

Query: 232 SSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSN 291
              IE+  K + EG+E                 +V+ +A G  HSL L ++G + + G N
Sbjct: 149 ---IERIPKKI-EGLE-----------------DVIKVAAGSRHSLALKKDGTVWAWGYN 187

Query: 292 VYGQLGREKQDMGMFPVDIN--FHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNR 349
            YGQLG E       PV +        I +G   S+A+   R      G      WG+N 
Sbjct: 188 YYGQLGDESNIRRNTPVQVKGLTGVKDIDAGDFFSVAL---RDDGTVWG------WGYNY 238

Query: 350 SSQLGR-MGPD-NVPLVVEGL 368
             Q+G   G + NVPL   G+
Sbjct: 239 KGQIGCGTGINSNVPLQTVGV 259



 Score = 45.1 bits (105), Expect = 0.064,   Method: Compositional matrix adjust.
 Identities = 34/109 (31%), Positives = 55/109 (50%), Gaps = 14/109 (12%)

Query: 267 VDIACGFDHSLVLGRNGVLLSCGSNVYGQLGR-EKQDMGMFPVDIN--FHPVSISSGLGH 323
           V +ACG  H++ L ++G + + G N YGQLG  E  ++   P  I      + +++G  H
Sbjct: 112 VQVACGEYHTIALKKDGTVWTWGYNSYGQLGLGEAGEIERIPKKIEGLEDVIKVAAGSRH 171

Query: 324 SLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGP--DNVPLVVEGLEG 370
           SLA+ +  +         + +WG+N   QLG       N P+ V+GL G
Sbjct: 172 SLALKKDGT---------VWAWGYNYYGQLGDESNIRRNTPVQVKGLTG 211


>gi|325186780|emb|CCA21326.1| regulator of chromosome condensation (RCC1)like protein putative
           [Albugo laibachii Nc14]
          Length = 954

 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 81/294 (27%), Positives = 132/294 (44%), Gaps = 65/294 (22%)

Query: 66  VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAF 125
           +  ++ G  HS+A+T+ G V++WG   + +LG G +  R   N P+++  L +  +    
Sbjct: 298 IIHIACGAKHSVALTSAGEVYSWGSGEDGRLGHGEMRDR---NVPRKIMALLRHRIEYVS 354

Query: 126 ASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEA--LAGEKIVKVSFGWGH 183
             G  ++ + D   ++ +G+ + G+LGLG D      P  V       ++I+KV  GW  
Sbjct: 355 CGGSHTAVVSDQNLVFTFGRGRNGRLGLG-DTKCHDTPQEVPTWGFRKQRIIKVVCGWNF 413

Query: 184 ALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQ-EISSSTIEKAQKLV 242
            +A + +G++F WG  ++G+ G LG                  DQ E+S   IEK     
Sbjct: 414 TIALSLEGRVFSWGKQSEGQCG-LGFC----------------DQDELSPCLIEK----- 451

Query: 243 SEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGR---- 298
                            L++   +VD+ACG+ HSL L     +LS G   YGQLGR    
Sbjct: 452 -----------------LLDN-RIVDVACGYTHSLALTSQHEVLSWGLGEYGQLGRGIVY 493

Query: 299 ----EKQDMGMFPVDINFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWN 348
               E  D  +F  +   HP  I  G  HS+         +T G++ + +WG N
Sbjct: 494 QPSPESIDQSLFACE-GGHPQRIYCGAFHSI---------ITAGSKILYAWGLN 537



 Score = 75.9 bits (185), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 72/277 (25%), Positives = 109/277 (39%), Gaps = 48/277 (17%)

Query: 24  ASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGL-PSDVTSVSAGHYHSLAVTNN 82
            S   V S+G G  G LG      G   D   P ++  L    +  VS G  H+  V++ 
Sbjct: 312 TSAGEVYSWGSGEDGRLG-----HGEMRDRNVPRKIMALLRHRIEYVSCGGSHTAVVSDQ 366

Query: 83  GAVWAWGRNNEVQLGRGALESRATWNDPKRVE--GLDQVNVCAAFASGVVSSAIGDDGSL 140
             V+ +GR    +LG G  +   T   P+ V   G  +  +         + A+  +G +
Sbjct: 367 NLVFTFGRGRNGRLGLGDTKCHDT---PQEVPTWGFRKQRIIKVVCGWNFTIALSLEGRV 423

Query: 141 WVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSA 200
           + WGK   GQ GLG    + + P  +E L   +IV V+ G+ H+LA T   ++  WG   
Sbjct: 424 FSWGKQSEGQCGLGFCDQDELSPCLIEKLLDNRIVDVACGYTHSLALTSQHEVLSWGL-- 481

Query: 201 DGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFL 260
            G  G LG+ +   P   +ID+S                                   F 
Sbjct: 482 -GEYGQLGRGIVYQPSPESIDQSL----------------------------------FA 506

Query: 261 VEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLG 297
            EG     I CG  HS++   + +L + G N YG  G
Sbjct: 507 CEGGHPQRIYCGAFHSIITAGSKILYAWGLNSYGACG 543



 Score = 45.4 bits (106), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 43/152 (28%), Positives = 65/152 (42%), Gaps = 22/152 (14%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSD-VTSVSAGHYHSLAVTNNGAVWA 87
           V S+G  S+G  GL         D   P  +  L  + +  V+ G+ HSLA+T+   V +
Sbjct: 423 VFSWGKQSEGQCGL----GFCDQDELSPCLIEKLLDNRIVDVACGYTHSLALTSQHEVLS 478

Query: 88  WGRNNEVQLGRGALESRATWNDPKRVE--------GLDQVNVCAAFASGVVSSAIGDDGS 139
           WG     QLGRG +   +    P+ ++        G  Q   C AF S + + +      
Sbjct: 479 WGLGEYGQLGRGIVYQPS----PESIDQSLFACEGGHPQRIYCGAFHSIITAGS----KI 530

Query: 140 LWVWGKSKRGQLGLGKDITEAIVPSRVEALAG 171
           L+ WG +  G  GLG  +   I P R +  A 
Sbjct: 531 LYAWGLNSYGACGLGHTLNRDI-PERNDFFAN 561


>gi|212721370|ref|NP_001132850.1| uncharacterized protein LOC100194342 [Zea mays]
 gi|194695574|gb|ACF81871.1| unknown [Zea mays]
 gi|413924971|gb|AFW64903.1| putative regulator of chromosome condensation (RCC1) family protein
           [Zea mays]
          Length = 418

 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 101/343 (29%), Positives = 157/343 (45%), Gaps = 45/343 (13%)

Query: 32  FGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVT----SVSAGHYHSLAVTNNGAVWA 87
           +G+G  G LGL     G     + PT  P   +       S++ G  H+L +T NG V+A
Sbjct: 33  WGNGDYGRLGL-----GSLESRWSPTVCPFFLARAADPPASLACGGAHTLFLTQNGRVFA 87

Query: 88  WGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSK 147
            G N+  QLG G   S     +P  + G  +  V    A    S A+  DG L+VWG++ 
Sbjct: 88  TGLNDFGQLGIGT--SVTHMLEPVEISGFHE-RVVEVSAGNHHSCAVTADGKLFVWGRNS 144

Query: 148 RGQLGLGKDITEAI-VPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGN 206
            GQLGLGK   + +  P++V+ L   ++  V+ G  H++A TE+G++  WG +  GR+G+
Sbjct: 145 GGQLGLGKGAGKVVSTPTKVDCLTDLRVKTVALGSEHSIAVTEEGEVLSWGAAGSGRLGH 204

Query: 207 ------LGKALESSPLDSNIDRSSESDQ-------EISSSTIEKAQKLVSEGMEKEKYMP 253
                 LG +L S+     + ++ +  +        + S+ I++   L   G + EK   
Sbjct: 205 GRQSSILGFSLTSTEYTPRLIKNFDGIKIKKIAAGMLHSACIDEKGTLFIFGQKTEKGFG 264

Query: 254 IIWEPFLVEGVEVV----DIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVD 309
              E F    VE +    ++ACG  H+ V+  +G L S GSN  G LG    DM   P  
Sbjct: 265 RPNEEFRPNIVEEIPFSEEVACGGYHTCVVTDSGDLYSWGSNENGCLGLGGTDMVRSPEI 324

Query: 310 INFH----PVS-ISSGLGHSLAICEVRSSNVTGGARGIVSWGW 347
           +       PVS +S G  H+  +              I +WGW
Sbjct: 325 LKSSLFKLPVSKVSCGWKHTAVV----------SGDDIYTWGW 357



 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 88/340 (25%), Positives = 141/340 (41%), Gaps = 49/340 (14%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAW 88
           V + G    G LG+ TS+T +     EP  + G    V  VSAG++HS AVT +G ++ W
Sbjct: 85  VFATGLNDFGQLGIGTSVTHM----LEPVEISGFHERVVEVSAGNHHSCAVTADGKLFVW 140

Query: 89  GRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKR 148
           GRN+  QLG G    +   + P +V+ L  + V         S A+ ++G +  WG +  
Sbjct: 141 GRNSGGQLGLGKGAGKVV-STPTKVDCLTDLRVKTVALGSEHSIAVTEEGEVLSWGAAGS 199

Query: 149 GQLGLGKD--------ITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSA 200
           G+LG G+          +    P  ++   G KI K++ G  H+    E G LF +G   
Sbjct: 200 GRLGHGRQSSILGFSLTSTEYTPRLIKNFDGIKIKKIAAGMLHSACIDEKGTLFIFGQKT 259

Query: 201 DGRIGNLGKALESSPLDSNIDRSSESDQEIS-----SSTIEKAQKLVSEGMEKEKYM--- 252
           +   G   +         NI       +E++     +  +  +  L S G  +   +   
Sbjct: 260 EKGFGRPNEEFR-----PNIVEEIPFSEEVACGGYHTCVVTDSGDLYSWGSNENGCLGLG 314

Query: 253 -------PIIWEPFLVEGVEVVDIACGFDHSLVL-----------GRNGVLLSCGSNVYG 294
                  P I +  L + + V  ++CG+ H+ V+           G NG     G +  G
Sbjct: 315 GTDMVRSPEILKSSLFK-LPVSKVSCGWKHTAVVSGDDIYTWGWGGANGTFFEEGHSSGG 373

Query: 295 QLGR----EKQDMGMFPVDINFHPVSISSGLGHSLAICEV 330
           QLG     +  +  M P   N   V +S G  H+ AI E 
Sbjct: 374 QLGHGNDVDYFEPMMVPFGTNARAVHVSCGFNHTGAIYEC 413


>gi|115373014|ref|ZP_01460317.1| BNR repeat domain protein [Stigmatella aurantiaca DW4/3-1]
 gi|310821893|ref|YP_003954251.1| regulator of chromosome condensation [Stigmatella aurantiaca
           DW4/3-1]
 gi|115369926|gb|EAU68858.1| BNR repeat domain protein [Stigmatella aurantiaca DW4/3-1]
 gi|309394965|gb|ADO72424.1| Regulator of chromosome condensation [Stigmatella aurantiaca
           DW4/3-1]
          Length = 864

 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 100/322 (31%), Positives = 149/322 (46%), Gaps = 46/322 (14%)

Query: 69  VSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASG 128
           VSAG YHSL + + GAV AWG+NN  QLG G+ ++R     P  V GL  +   A  A G
Sbjct: 68  VSAGSYHSLLLRSTGAVLAWGQNNSGQLGDGSTQNRTL---PVNVLGLPSIK--AISAGG 122

Query: 129 VVSSAIGDDGSLWVWGKSKRGQLGL-----GKDITE----AIVPSRVEALAGEKIVKVSF 179
             S A+G DG +W WG +  GQLG      GK  +E     + P  +    G     VS 
Sbjct: 123 SYSLAVGADGKVWAWGANNSGQLGTGYLGNGKSGSEYADFQVTPVSIVIPGG--AAAVSG 180

Query: 180 GWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQE--ISSSTIEK 237
           G  H+LA  +DGKL+ WG +  G++G+   A   +P+  NI   + +       S  I +
Sbjct: 181 GLNHSLALAKDGKLWAWGANTYGQLGDGTTANRLAPVSVNIPGGAIAIAAGWYHSLAIAR 240

Query: 238 AQKL----------VSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLS 287
             ++          V  G    +  P++    +      + +A G  HSLV+  NG + S
Sbjct: 241 DGRVWAWGRNNSGQVGNGGTANQLTPVV----VAFPGSAIAVAGGGSHSLVVLSNGTVWS 296

Query: 288 CGSNVYGQLGREKQDMGMFPVDINFHPVS--ISSGLGHSLAICEVRSSNVTGGARGIVSW 345
            G+N  GQLG       + P+ +    V+  +++G   SLAI           + G+ SW
Sbjct: 297 WGANNAGQLGDGSNATRVSPIQVPGIGVATKVAAGGYFSLAIT----------SDGVWSW 346

Query: 346 GWNRSSQLGR--MGPDNVPLVV 365
           G N   QLG   +   +VP+ +
Sbjct: 347 GQNTRGQLGNGSLANSSVPVFI 368



 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 58/160 (36%), Positives = 86/160 (53%), Gaps = 10/160 (6%)

Query: 48  GVGGDAYEPTRVP-GLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRAT 106
           G GG A + T V    P    +V+ G  HSL V +NG VW+WG NN  QLG G+  +R +
Sbjct: 256 GNGGTANQLTPVVVAFPGSAIAVAGGGSHSLVVLSNGTVWSWGANNAGQLGDGSNATRVS 315

Query: 107 WNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRV 166
              P +V G+      AA   G  S AI  DG +W WG++ RGQLG G  +  + VP  +
Sbjct: 316 ---PIQVPGIGVATKVAA--GGYFSLAITSDG-VWSWGQNTRGQLGNGS-LANSSVPVFI 368

Query: 167 EALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGN 206
            A +    + +S G+ H+L       ++ WG++A G++G+
Sbjct: 369 TATS--NALALSGGYHHSLILRPGCPIWAWGFNAYGQLGD 406



 Score = 74.3 bits (181), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 67/244 (27%), Positives = 102/244 (41%), Gaps = 67/244 (27%)

Query: 62  LPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNV 121
           +P    +++AG YHSLA+  +G VWAWGRNN  Q+G G   ++ T              V
Sbjct: 221 IPGGAIAIAAGWYHSLAIARDGRVWAWGRNNSGQVGNGGTANQLT-------------PV 267

Query: 122 CAAFASGVVSSAIG--------DDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEK 173
             AF    ++ A G         +G++W WG +  GQLG G + T  + P +V  +    
Sbjct: 268 VVAFPGSAIAVAGGGSHSLVVLSNGTVWSWGANNAGQLGDGSNATR-VSPIQVPGIG--V 324

Query: 174 IVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSS 233
             KV+ G   +LA T DG ++ WG +  G++GN   A  S P+                 
Sbjct: 325 ATKVAAGGYFSLAITSDG-VWSWGQNTRGQLGNGSLANSSVPV----------------- 366

Query: 234 TIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVY 293
                                    F+      + ++ G+ HSL+L     + + G N Y
Sbjct: 367 -------------------------FITATSNALALSGGYHHSLILRPGCPIWAWGFNAY 401

Query: 294 GQLG 297
           GQLG
Sbjct: 402 GQLG 405


>gi|168024283|ref|XP_001764666.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162684244|gb|EDQ70648.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 401

 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 103/355 (29%), Positives = 169/355 (47%), Gaps = 50/355 (14%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPS-DVTSVSAGHYHSLAVTNNGAVWA 87
           V  +G+G  G LG  +     G   +EPT    +      +++ G  H+L +T  G V+A
Sbjct: 11  VALWGNGDYGRLGQAS-----GESFWEPTVCKSMQHLQPIALACGGAHTLVLTEEGRVYA 65

Query: 88  WGRNNEVQLGRGALESRATWNDPKRVEGL-DQVNVCAAFASGVVSSAIGDDGSLWVWGKS 146
            G N+  QLG       +   +   VEGL D+       A    S+AI +DG +++WG++
Sbjct: 66  SGLNDWGQLGLPLSTGHSM--EFLEVEGLPDEAKFTHIAAGDFHSAAISEDGRVYMWGRN 123

Query: 147 KRGQLGLGKDITEAIVPSR-VEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIG 205
            +GQLGLGK     +  ++ VE+L   +I  ++ G  H+LA +E+G++  WG S +GR+G
Sbjct: 124 TQGQLGLGKRGKGKVCAAQWVESLKDFRIQALALGAEHSLALSEEGEVLSWGTSLNGRLG 183

Query: 206 NLGKALESSPLDSNIDRSSE---------SDQEIS--------SSTIEKAQKLVSEGMEK 248
           + G+   SS + S   +SSE          D ++S        S+ +++   L + G  +
Sbjct: 184 H-GEGHRSSSMFSIFRKSSEYTPRLVKGFRDVKVSKVAAGLTHSACLDEQGSLFTFGKGR 242

Query: 249 EKYMPI-----IWEPFLVEGVEVVD-IACGFDHSLVLGRNGVLLSCGSNVYGQL--GREK 300
           E  + +     I EP  V  +  V+ IACG  H+  + RNG L   GSN YG L  G + 
Sbjct: 243 ECQLGLGGDRDISEPKRVPVIPPVEEIACGGYHTGAISRNGQLYMWGSNEYGCLGFGYKH 302

Query: 301 QDMGMFPVDI-----NFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRS 350
           Q+    P+ +     +     +  G  H++A+       V G    + +WGW  S
Sbjct: 303 QNATSLPMLVEGALESLRVTQVQCGWKHTMAL------TVDG---DVFAWGWGGS 348



 Score = 62.8 bits (151), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 55/176 (31%), Positives = 87/176 (49%), Gaps = 22/176 (12%)

Query: 28  AVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWA 87
           ++ +FG G +  LGL     G   D  EP RVP +P  V  ++ G YH+ A++ NG ++ 
Sbjct: 234 SLFTFGKGRECQLGL-----GGDRDISEPKRVPVIPP-VEEIACGGYHTGAISRNGQLYM 287

Query: 88  WGRNNEVQLGRGALESRATWNDPKRVEG-LDQVNVCAAFASGVVSSAIGDDGSLWVWG-- 144
           WG N    LG G     AT + P  VEG L+ + V         + A+  DG ++ WG  
Sbjct: 288 WGSNEYGCLGFGYKHQNAT-SLPMLVEGALESLRVTQVQCGWKHTMALTVDGDVFAWGWG 346

Query: 145 ----------KSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTED 190
                      S  GQLGLG +  + + P++V++    K +++S G+ H+ A  E+
Sbjct: 347 GSQGTHGVDGLSSGGQLGLGNE-NDFLEPTQVKS-KNMKAIQISCGFNHSGAILEE 400


>gi|297832882|ref|XP_002884323.1| regulator of chromosome condensation family protein [Arabidopsis
           lyrata subsp. lyrata]
 gi|297330163|gb|EFH60582.1| regulator of chromosome condensation family protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 393

 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 61/168 (36%), Positives = 94/168 (55%), Gaps = 5/168 (2%)

Query: 54  YEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRV 113
           + P RV GL  +V+ ++ G +H+LA+  +G + AWG N   QLG G  +  +    P  V
Sbjct: 187 FVPVRVQGL-ENVSIIAVGAFHNLALEEDGRLLAWGNNEYGQLGTGDTQPTS---HPVPV 242

Query: 114 EGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLG-KDITEAIVPSRVEALAGE 172
            GLD + +    A G  S+A+ D G ++ WG+ + G+LG G  D +  +VP +V  LA E
Sbjct: 243 HGLDDLTLVDIAAGGWHSTALTDKGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAEE 302

Query: 173 KIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNI 220
            I++VS G  H++A T DG++F +G    GR+G   K     PL+  I
Sbjct: 303 DIIQVSCGGTHSVALTRDGRIFSFGRGDHGRLGYGRKVTTGQPLELPI 350



 Score = 91.3 bits (225), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 92/305 (30%), Positives = 138/305 (45%), Gaps = 37/305 (12%)

Query: 87  AWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKS 146
           AWG   + QLG G  E +  W     VE L+  +V +  +    S AI DDG+++ WG +
Sbjct: 9   AWGSGEDGQLGIGTNEEKE-WA--CVVEALEPYSVRSVVSGSRNSLAICDDGTMFTWGWN 65

Query: 147 KRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGN 206
           +RG LG   +     +PSRV+ALA  KI + + G  H LA  + G+ + WG +  G+ G 
Sbjct: 66  QRGTLGHPPETKTENIPSRVKALANVKITQAAIGGWHCLAVDDQGRAYAWGGNEYGQCG- 124

Query: 207 LGKALESSPLDSNIDRSSESDQEISSSTIEKAQ-KLVSEG------MEKEKY-------- 251
                   PL   + R    D  I      K   + V+ G      + +E +        
Sbjct: 125 ------EEPLKDEMGRPVRRDIVIPKRCAPKLTVRQVAAGGTHSVVLTREGHVWTWGQPW 178

Query: 252 ----MPIIWEPFLVEGVEVVD-IACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMF 306
               +  I+ P  V+G+E V  IA G  H+L L  +G LL+ G+N YGQLG         
Sbjct: 179 PPGDIKQIFVPVRVQGLENVSIIAVGAFHNLALEEDGRLLAWGNNEYGQLGTGDTQPTSH 238

Query: 307 PVDI----NFHPVSISSGLGHSLAICEVRSSNVTGGARGIV-SWGWNRSSQLGRMGPDNV 361
           PV +    +   V I++G  HS A+ +     V G  RG     G+  + +  +M P  V
Sbjct: 239 PVPVHGLDDLTLVDIAAGGWHSTALTD--KGEVYGWGRGEHGRLGFGDNDKSSKMVPQKV 296

Query: 362 PLVVE 366
            L+ E
Sbjct: 297 NLLAE 301



 Score = 79.0 bits (193), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 75/290 (25%), Positives = 126/290 (43%), Gaps = 68/290 (23%)

Query: 66  VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAF 125
           V  V+AG  HS+ +T  G VW WG+        G ++       P RV+GL+ V++ A  
Sbjct: 152 VRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQIFV---PVRVQGLENVSIIAVG 204

Query: 126 ASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHAL 185
           A    + A+ +DG L  WG ++ GQLG G D      P  V  L    +V ++ G  H+ 
Sbjct: 205 A--FHNLALEEDGRLLAWGNNEYGQLGTG-DTQPTSHPVPVHGLDDLTLVDIAAGGWHST 261

Query: 186 AQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEG 245
           A T+ G+++GWG    GR+G                     D + SS  + +   L++E 
Sbjct: 262 ALTDKGEVYGWGRGEHGRLGF-------------------GDNDKSSKMVPQKVNLLAE- 301

Query: 246 MEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGM 305
                              +++ ++CG  HS+ L R+G + S G   +G+LG  ++    
Sbjct: 302 ------------------EDIIQVSCGGTHSVALTRDGRIFSFGRGDHGRLGYGRKVTTG 343

Query: 306 FPVDI---------NFHPVS-----------ISSGLGHSLAICEVRSSNV 335
            P+++         +F+              I+ G  H+LAI E +S ++
Sbjct: 344 QPLELPIMIPPPEGSFNHADEEEEGKWSAKWIACGGRHTLAIVEWKSDDI 393



 Score = 43.9 bits (102), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 60/239 (25%), Positives = 90/239 (37%), Gaps = 56/239 (23%)

Query: 139 SLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGY 198
           S+  WG  + GQLG+G +  E      VEAL    +  V  G  ++LA  +DG +F WG+
Sbjct: 6   SIIAWGSGEDGQLGIGTN-EEKEWACVVEALEPYSVRSVVSGSRNSLAICDDGTMFTWGW 64

Query: 199 SADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEP 258
           +  G +G+                      E  +  I    K ++               
Sbjct: 65  NQRGTLGH--------------------PPETKTENIPSRVKALAN-------------- 90

Query: 259 FLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGRE--KQDMGMFPVDINFHPVS 316
                V++   A G  H L +   G   + G N YGQ G E  K +MG  PV  +   + 
Sbjct: 91  -----VKITQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPLKDEMGR-PVRRD---IV 141

Query: 317 ISSGLGHSLAICEVRSSNVTGGARGIV------SWGWNRSSQLGRMGPDNVPLVVEGLE 369
           I       L + +V      GG   +V       W W +    G +    VP+ V+GLE
Sbjct: 142 IPKRCAPKLTVRQV----AAGGTHSVVLTREGHVWTWGQPWPPGDIKQIFVPVRVQGLE 196


>gi|71027837|ref|XP_763562.1| hypothetical protein [Theileria parva strain Muguga]
 gi|68350515|gb|EAN31279.1| hypothetical protein TP03_0534 [Theileria parva]
          Length = 1060

 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 91/323 (28%), Positives = 146/323 (45%), Gaps = 34/323 (10%)

Query: 55  EPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVE 114
           EP       S +T ++ G  H+LAVT NG +++WG N   QLG G L SR   +    +E
Sbjct: 518 EPILFNHFSSKITKIACGSSHTLAVTINGLLFSWGSNESGQLGHGDLRSRVVPDSVSNIE 577

Query: 115 GLDQVNVCAAF-ASGVVSSAIGDD------GSLWVWGKSKRGQLGLGKDITEAIVPSRVE 167
             + +NV A    SG + S   ++      G+LWV+G S  G+LGLG+++T A++  R  
Sbjct: 578 --NCINVFAGIDNSGCICSVSHENMMKDEYGTLWVFGSSTCGKLGLGENMTSAVMTPREV 635

Query: 168 ALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESD 227
            + G  +  V+ G  H+LA T DG L+  G  + GR+G        + +    D    + 
Sbjct: 636 NITG--VHSVALGPMHSLALTSDGTLYAAGAGSGGRLGTGNTTNSFTFVQVKTDHKFVAV 693

Query: 228 QEISSSTIEKAQKLVSEGMEKEKYMPI---IWEPFLVEGVEVVD-------IACGFDHSL 277
              +S ++  + +    G  + KY+     + EP ++  +           +A   +HSL
Sbjct: 694 GAGASHSLAISMENDLYGWGEGKYLTFDEDVLEPTIINTIPSTTGQAKVVALAVAANHSL 753

Query: 278 VLGRNGVLLSCGSNVYGQLG------REKQDMGMFPVDINFHPVSISSGLGHSLAICEVR 331
           VL ++G L   G N YGQLG          +    P+ +N     +        + C   
Sbjct: 754 VLSQSGNLSGFGDNSYGQLGVFLSMKSSANNFIKMPLPVNVQGNIVCVATSRYFSSC--- 810

Query: 332 SSNVTGGARGIVSWGWNRSSQLG 354
            SN+ G A    SWG  +  +LG
Sbjct: 811 -SNLGGDA---FSWGLAKDHRLG 829



 Score = 78.6 bits (192), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 53/179 (29%), Positives = 88/179 (49%), Gaps = 16/179 (8%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSD--VTSVSAGHYHSLAVTNNGAVW 86
           + ++G G+ G LG      G   + Y P +V   P D  ++  +AG  HS+A+   G +W
Sbjct: 191 LYAWGVGAHGVLG-----NGSVANRYIPVKVI-FPQDTFISKCAAGARHSMALDIKGNIW 244

Query: 87  AWGRNNEVQL--------GRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDG 138
           +WG    V          GR  L S  +   P  +E  D   V         S+ +   G
Sbjct: 245 SWGYGGIVHSIFHIIHRNGRLGLGSTRSCFTPNLIEIFDTYEVFQISCGDSHSACLDRFG 304

Query: 139 SLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWG 197
           +++ WG  + G+LGLG  +++ + P+ V++L G  I++VS G G+ LA +  GK++ WG
Sbjct: 305 TVYTWGSCRGGKLGLGNILSDVLEPTIVQSLKGIHIIQVSCGSGNTLALSSSGKIYQWG 363



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 79/325 (24%), Positives = 129/325 (39%), Gaps = 78/325 (24%)

Query: 9   HNHVNVLTSRIFMRSASGTAVVSFGDGSQGALGLPTSLTG------VGGDAY-EP---TR 58
           H+ V V +SR    + +   V +FG G+ G LG             +G D   EP   T 
Sbjct: 101 HSAVLVCSSR---ENINAGTVFTFGLGNSGRLGYHIDTNSEIISQQIGTDDKDEPSWCTP 157

Query: 59  VP-------GLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPK 111
           VP       GL ++V ++S G  H+L  T +G ++AWG      LG G++ +R     P 
Sbjct: 158 VPQPVGMSIGLRNNVVTISCGANHTLVTTADGYLYAWGVGAHGVLGNGSVANRYI---PV 214

Query: 112 RVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGK-----------SKRGQLGLGKDITEA 160
           +V       +    A    S A+   G++W WG             + G+LGLG      
Sbjct: 215 KVIFPQDTFISKCAAGARHSMALDIKGNIWSWGYGGIVHSIFHIIHRNGRLGLGST-RSC 273

Query: 161 IVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNI 220
             P+ +E     ++ ++S G  H+      G ++ WG    G++G LG  L S  L+  I
Sbjct: 274 FTPNLIEIFDTYEVFQISCGDSHSACLDRFGTVYTWGSCRGGKLG-LGNIL-SDVLEPTI 331

Query: 221 DRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLG 280
            +S                                     ++G+ ++ ++CG  ++L L 
Sbjct: 332 VQS-------------------------------------LKGIHIIQVSCGSGNTLALS 354

Query: 281 RNGVLLSCGSNVYGQLGREKQDMGM 305
            +G +   GS     LG  KQ  G+
Sbjct: 355 SSGKIYQWGST----LGFNKQTDGL 375



 Score = 48.1 bits (113), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 68/289 (23%), Positives = 109/289 (37%), Gaps = 60/289 (20%)

Query: 52  DAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPK 111
           D  E T  P     +  ++ G  H   +T NG V+ WG NN         E    + +P 
Sbjct: 462 DTVEKTVNPYDERRIQQIAVGDAHGALLTCNGTVYTWGANNGTGC-NSTTEPLENYCEPI 520

Query: 112 RVEGL-DQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALA 170
                  ++   A  +S  ++  I  +G L+ WG ++ GQLG G D+   +VP  V  + 
Sbjct: 521 LFNHFSSKITKIACGSSHTLAVTI--NGLLFSWGSNESGQLGHG-DLRSRVVPDSVSNI- 576

Query: 171 GEKIVKVSFGWGHA----------LAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNI 220
            E  + V  G  ++          + + E G L+ +G S  G++G LG+ + S+      
Sbjct: 577 -ENCINVFAGIDNSGCICSVSHENMMKDEYGTLWVFGSSTCGKLG-LGENMTSA------ 628

Query: 221 DRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLG 280
                                             +  P  V    V  +A G  HSL L 
Sbjct: 629 ----------------------------------VMTPREVNITGVHSVALGPMHSLALT 654

Query: 281 RNGVLLSCGSNVYGQL--GREKQDMGMFPVDINFHPVSISSGLGHSLAI 327
            +G L + G+   G+L  G          V  +   V++ +G  HSLAI
Sbjct: 655 SDGTLYAAGAGSGGRLGTGNTTNSFTFVQVKTDHKFVAVGAGASHSLAI 703



 Score = 43.9 bits (102), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 53/229 (23%), Positives = 100/229 (43%), Gaps = 37/229 (16%)

Query: 143 WGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALA-------QTEDGKLFG 195
           WGK     LG G ++  +  P  +   +G ++ +VS G  H+             G +F 
Sbjct: 61  WGKVPFNCLGQGVEVNTSEFPRVIPFFSGRRVTQVSCGDYHSAVLVCSSRENINAGTVFT 120

Query: 196 WGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPII 255
           +G    GR+G             +ID +SE            +Q++ ++  ++  +   +
Sbjct: 121 FGLGNSGRLG------------YHIDTNSEI----------ISQQIGTDDKDEPSWCTPV 158

Query: 256 WEPF-LVEGVE--VVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINF 312
            +P  +  G+   VV I+CG +H+LV   +G L + G   +G LG         PV + F
Sbjct: 159 PQPVGMSIGLRNNVVTISCGANHTLVTTADGYLYAWGVGAHGVLGNGSVANRYIPVKVIF 218

Query: 313 HPVSI----SSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMG 357
              +     ++G  HS+A+ +++ +  + G  GIV   ++   + GR+G
Sbjct: 219 PQDTFISKCAAGARHSMAL-DIKGNIWSWGYGGIVHSIFHIIHRNGRLG 266


>gi|195482069|ref|XP_002101897.1| GE17877 [Drosophila yakuba]
 gi|194189421|gb|EDX03005.1| GE17877 [Drosophila yakuba]
          Length = 2660

 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 105/357 (29%), Positives = 154/357 (43%), Gaps = 76/357 (21%)

Query: 11   HVNVLTSRIFMRSASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVT--- 67
            H+   +  +F+ S  G  V + G+G+ G LGL     GV  +   P ++P L   V    
Sbjct: 769  HIAGGSKSLFIVSQDGK-VYACGEGTNGRLGL-----GVTHNVPLPHQLPVLHQYVVKKV 822

Query: 68   SVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFAS 127
            +V +G  H+LA+T +G V++WG   + +LG G   +R T + P+ VE L    +      
Sbjct: 823  AVHSGGKHALALTLDGKVFSWGEGEDGKLGHG---NRTTLDKPRLVEALRAKKIRDVACG 879

Query: 128  GVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGW--GHAL 185
               S+AI   G L+ WG  + G+LG G + T+ + P  V ALAG ++V+V+ G      L
Sbjct: 880  SSHSAAISSQGELYTWGLGEYGRLGHGDNATQ-LKPKLVTALAGRRVVQVACGSRDAQTL 938

Query: 186  AQTEDGKLFGWGYSADGRIGNLGK-ALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSE 244
            A TEDG +F WG   DG  G LG+   E S     I+R S                    
Sbjct: 939  ALTEDGAVFSWG---DGDFGKLGRGGSEGSDTPHEIERLS-------------------- 975

Query: 245  GMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLG------- 297
                              G+ VV I CG   SL L R G + + G   Y +LG       
Sbjct: 976  ------------------GIGVVQIECGAQFSLALTRAGEVWTWGKGDYYRLGHGGDQHV 1017

Query: 298  REKQDMGMFPVDINFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLG 354
            R+ Q +G        H   ++ G  H LA+ +         A  + +WG N   Q G
Sbjct: 1018 RKPQPIGGLRGRRVIH---VAVGALHCLAVTD---------AGQVYAWGDNDHGQQG 1062



 Score = 81.3 bits (199), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 84/315 (26%), Positives = 138/315 (43%), Gaps = 67/315 (21%)

Query: 68   SVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFAS 127
            +V++G  H LA+T  G V+AWG   + +LG G   +R +++ PK VE L+ ++V      
Sbjct: 1888 AVNSGGKHCLALTTEGEVYAWGEGEDGKLGHG---NRMSYDRPKLVEHLNGMSVADIACG 1944

Query: 128  GVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHA--L 185
               S+AI   G +  WGK + G+LG G D  + + P  VEAL G + + ++ G G A  L
Sbjct: 1945 SAHSAAITASGHVLTWGKGRYGRLGHG-DSEDQLRPKLVEALLGYRAIDIACGSGDAQTL 2003

Query: 186  AQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEG 245
              T+D  ++ WG   DG  G LG+                                 S+G
Sbjct: 2004 CITDDDNVWSWG---DGDYGKLGRG-------------------------------GSDG 2029

Query: 246  MEKEKYMPIIWEPFLVE---GVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQD 302
             +          P+ +E   G+ VV + CG   S+ L ++G + + G   + +LG    D
Sbjct: 2030 CKL---------PYKIESLAGLGVVKVECGSQFSVALTKSGAVYTWGKGDFHRLGHGSVD 2080

Query: 303  MGMFPVDINF----HPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQL--GRM 356
                P  +        +SI++G  H +A  +         +  + +WG N   QL  G +
Sbjct: 2081 HVRRPKKVAALQGKKIISIATGSLHCVACSD---------SGEVYTWGDNDEGQLGDGTV 2131

Query: 357  GPDNVPLVVEGLEGE 371
                 P +V  L+G+
Sbjct: 2132 TAIQRPRLVAALQGK 2146



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 54/188 (28%), Positives = 94/188 (50%), Gaps = 15/188 (7%)

Query: 23   SASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGL----PSDVTSVSAGHYHSLA 78
            +ASG  V+++G G  G LG      G   D   P  V  L      D+ +  +G   +L 
Sbjct: 1952 TASGH-VLTWGKGRYGRLG-----HGDSEDQLRPKLVEALLGYRAIDI-ACGSGDAQTLC 2004

Query: 79   VTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDG 138
            +T++  VW+WG  +  +LGRG  +       P ++E L  + V         S A+   G
Sbjct: 2005 ITDDDNVWSWGDGDYGKLGRGGSDG---CKLPYKIESLAGLGVVKVECGSQFSVALTKSG 2061

Query: 139  SLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGY 198
            +++ WGK    +LG G  +     P +V AL G+KI+ ++ G  H +A ++ G+++ WG 
Sbjct: 2062 AVYTWGKGDFHRLGHGS-VDHVRRPKKVAALQGKKIISIATGSLHCVACSDSGEVYTWGD 2120

Query: 199  SADGRIGN 206
            + +G++G+
Sbjct: 2121 NDEGQLGD 2128



 Score = 68.9 bits (167), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 44/133 (33%), Positives = 73/133 (54%), Gaps = 6/133 (4%)

Query: 75   HSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNV-CAAFASGVVSSA 133
             +LA+T +GAV++WG  +  +LGRG  E   T ++ +R+ G+  V + C A  S  ++ A
Sbjct: 936  QTLALTEDGAVFSWGDGDFGKLGRGGSEGSDTPHEIERLSGIGVVQIECGAQFSLALTRA 995

Query: 134  IGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKL 193
                G +W WGK    +LG G D      P  +  L G +++ V+ G  H LA T+ G++
Sbjct: 996  ----GEVWTWGKGDYYRLGHGGD-QHVRKPQPIGGLRGRRVIHVAVGALHCLAVTDAGQV 1050

Query: 194  FGWGYSADGRIGN 206
            + WG +  G+ G+
Sbjct: 1051 YAWGDNDHGQQGS 1063



 Score = 68.9 bits (167), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 53/159 (33%), Positives = 76/159 (47%), Gaps = 10/159 (6%)

Query: 29   VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPS-DVTSVSAGHYHSLAVTNNGAVWA 87
            V S+GDG  G LG      G       P ++  L    V  V  G   S+A+T +GAV+ 
Sbjct: 2011 VWSWGDGDYGKLG-----RGGSDGCKLPYKIESLAGLGVVKVECGSQFSVALTKSGAVYT 2065

Query: 88   WGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSK 147
            WG+ +  +LG G+++       PK+V  L    + +     +   A  D G ++ WG + 
Sbjct: 2066 WGKGDFHRLGHGSVDHV---RRPKKVAALQGKKIISIATGSLHCVACSDSGEVYTWGDND 2122

Query: 148  RGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALA 186
             GQLG G  +T    P  V AL G+ IVKV+ G  H LA
Sbjct: 2123 EGQLGDGT-VTAIQRPRLVAALQGKHIVKVTCGSAHTLA 2160



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 75/262 (28%), Positives = 112/262 (42%), Gaps = 40/262 (15%)

Query: 135  GDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLF 194
            G   +++ WG + RGQLG G + +    P+  EAL+  + V+++ G     A T DGKLF
Sbjct: 1794 GGASTIYGWGHNHRGQLG-GLEGSRIKTPTPCEALSLLRPVQLAGGEQSLFAVTPDGKLF 1852

Query: 195  GWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPI 254
              GY + GR+G  G    + P      +     +   +S  +    L +EG   E Y   
Sbjct: 1853 ATGYGSGGRLGVGGSDSWAIPTLLGSLQHVFVKKVAVNSGGKHCLALTTEG---EVYA-- 1907

Query: 255  IW-----------------EPFLVE---GVEVVDIACGFDHSLVLGRNGVLLSCGSNVYG 294
             W                  P LVE   G+ V DIACG  HS  +  +G +L+ G   YG
Sbjct: 1908 -WGEGEDGKLGHGNRMSYDRPKLVEHLNGMSVADIACGSAHSAAITASGHVLTWGKGRYG 1966

Query: 295  QLGREKQDMGMFP----VDINFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRS 350
            +LG    +  + P      + +  + I+ G G +  +C     NV        SWG    
Sbjct: 1967 RLGHGDSEDQLRPKLVEALLGYRAIDIACGSGDAQTLCITDDDNVW-------SWGDGDY 2019

Query: 351  SQLGRMGPD--NVPLVVEGLEG 370
             +LGR G D   +P  +E L G
Sbjct: 2020 GKLGRGGSDGCKLPYKIESLAG 2041



 Score = 54.7 bits (130), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 79/309 (25%), Positives = 122/309 (39%), Gaps = 55/309 (17%)

Query: 69   VSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNV--CAAFA 126
            ++ G     AVT +G ++A G  +  +LG G  +S   W  P  +  L  V V   A  +
Sbjct: 1835 LAGGEQSLFAVTPDGKLFATGYGSGGRLGVGGSDS---WAIPTLLGSLQHVFVKKVAVNS 1891

Query: 127  SGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALA 186
             G    A+  +G ++ WG+ + G+LG G  ++    P  VE L G  +  ++ G  H+ A
Sbjct: 1892 GGKHCLALTTEGEVYAWGEGEDGKLGHGNRMSYD-RPKLVEHLNGMSVADIACGSAHSAA 1950

Query: 187  QTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGM 246
             T  G +  WG    GR G LG                                    G 
Sbjct: 1951 ITASGHVLTWG---KGRYGRLG-----------------------------------HGD 1972

Query: 247  EKEKYMPIIWEPFLVEGVEVVDIACGF--DHSLVLGRNGVLLSCGSNVYGQLGREKQDMG 304
             +++  P + E  L  G   +DIACG     +L +  +  + S G   YG+LGR   D  
Sbjct: 1973 SEDQLRPKLVEALL--GYRAIDIACGSGDAQTLCITDDDNVWSWGDGDYGKLGRGGSDGC 2030

Query: 305  MFPVDINFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPDNV--P 362
              P  I        +GLG     C  + S     +  + +WG     +LG    D+V  P
Sbjct: 2031 KLPYKIES-----LAGLGVVKVECGSQFSVALTKSGAVYTWGKGDFHRLGHGSVDHVRRP 2085

Query: 363  LVVEGLEGE 371
              V  L+G+
Sbjct: 2086 KKVAALQGK 2094


>gi|408500685|ref|YP_006864604.1| RCC1 repeat-containing protein [Bifidobacterium asteroides PRL2011]
 gi|408465509|gb|AFU71038.1| RCC1 repeat-containing protein [Bifidobacterium asteroides PRL2011]
          Length = 1231

 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 93/324 (28%), Positives = 142/324 (43%), Gaps = 57/324 (17%)

Query: 43  PTSLTGVGGDAYE--PTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGA 100
           PTS +  GGD     P   PG+    + +S+G +H+LA+ ++G +++WG+N +  LGR  
Sbjct: 160 PTSGSAAGGDKITLVPPAKPGV--RFSHISSGLWHTLAMGSDGNLYSWGQN-KASLGRDT 216

Query: 101 LE------SRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLG 154
            E      S+A    P  V     V+     A   +S A+G DG+L+ WG +  GQLG  
Sbjct: 217 NEIPATAPSKAPEGTPGLVTPPTGVHFTQTSAGMSLSLAMGSDGNLYSWGLNDNGQLGRS 276

Query: 155 KDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESS 214
             IT A  P  V    G    + + G+  +LA   DG L+ WG   D   G LG+   S+
Sbjct: 277 TTITPADRPGLVTPPTGVHFTQFTAGYSQSLAIGSDGNLYSWG---DNSRGQLGRDTGSA 333

Query: 215 PLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFD 274
             D+   R S                           MP         G+    I+ G  
Sbjct: 334 TYDATPGRVS---------------------------MPT--------GITCTQISGGTF 358

Query: 275 HSLVLGRNGVLLSCGSNVYGQLGR--EKQDMGMFPVDINFHPVSISSGLGHSLAICEVRS 332
           +S+ LG +G + S G N  G+LGR  + ++ G  P     + V +  G+    AI     
Sbjct: 359 YSMALGSDGNIYSWGDNTQGELGRNTDSENPGTLP-----NKVILPKGVTKYTAIAAQGW 413

Query: 333 SNVTGGARG-IVSWGWNRSSQLGR 355
            ++  G+ G + SWG+N   Q+GR
Sbjct: 414 CSLAMGSDGNLYSWGYNSYGQMGR 437



 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 97/341 (28%), Positives = 150/341 (43%), Gaps = 69/341 (20%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGL---PSDV--TSVSAGHYHSLAVTNNG 83
           + S+G    G LG  T++T        P   PGL   P+ V  T  +AG+  SLA+ ++G
Sbjct: 262 LYSWGLNDNGQLGRSTTIT--------PADRPGLVTPPTGVHFTQFTAGYSQSLAIGSDG 313

Query: 84  AVWAWGRNNEVQLGR--GALESRATWNDPKRVEGLDQVNVCAAFASGVVSS-AIGDDGSL 140
            +++WG N+  QLGR  G+    AT   P RV     +  C   + G   S A+G DG++
Sbjct: 314 NLYSWGDNSRGQLGRDTGSATYDAT---PGRVSMPTGI-TCTQISGGTFYSMALGSDGNI 369

Query: 141 WVWGKSKRGQLGLGKDI-TEAIVPSRVEALAG--EKIVKVSFGWGHALAQTEDGKLFGWG 197
           + WG + +G+LG   D      +P++V    G  +     + GW  +LA   DG L+ WG
Sbjct: 370 YSWGDNTQGELGRNTDSENPGTLPNKVILPKGVTKYTAIAAQGW-CSLAMGSDGNLYSWG 428

Query: 198 YSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWE 257
           Y++ G++G                     D +  +  I+  +  +  G+ +         
Sbjct: 429 YNSYGQMGR--------------------DTDTPTQNIDPGKVTLPPGVTR--------- 459

Query: 258 PFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFHP--V 315
                         G  H+L +G +G L S GSN +GQLGR+   +       N  P  V
Sbjct: 460 --------FTQFGAGNQHTLAVGSDGNLYSWGSNKFGQLGRDANSL------RNATPGKV 505

Query: 316 SISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRM 356
           S+ +G+       E  SS + G    + SWG N  SQLGR 
Sbjct: 506 SLPAGISCIQINAENTSSLILGSDGNLYSWGDNSRSQLGRT 546



 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 51/145 (35%), Positives = 75/145 (51%), Gaps = 8/145 (5%)

Query: 69   VSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASG 128
            +S G  H+LA+  +G  WAWGRN   Q+G G L  R+T    K      Q    A   +G
Sbjct: 969  ISVGELHALAIGQDGTAWAWGRNTSGQIGDGTLTDRSTPTQVKNPADASQAFQAAQIIAG 1028

Query: 129  VVSS-AIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEK-------IVKVSFG 180
               S AI   G+ W WG++   QLG  +  +E +VPS+V   AG+        + ++S G
Sbjct: 1029 ATYSLAIDQSGTAWGWGENTFDQLGSNQGTSELLVPSQVSLPAGQDNAGKGFAVARISAG 1088

Query: 181  WGHALAQTEDGKLFGWGYSADGRIG 205
               +LA  +DGK + WGY+  G++G
Sbjct: 1089 SACSLAIGQDGKSYSWGYNYRGQLG 1113



 Score = 84.7 bits (208), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 90/306 (29%), Positives = 136/306 (44%), Gaps = 62/306 (20%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYE--PTRVPGLPSDVT--SVSAGHYHSLAVTNNGA 84
           + S+GD S+G LG  T     G   Y+  P RV  +P+ +T   +S G ++S+A+ ++G 
Sbjct: 315 LYSWGDNSRGQLGRDT-----GSATYDATPGRV-SMPTGITCTQISGGTFYSMALGSDGN 368

Query: 85  VWAWGRNNEVQLGRGALESRATWNDPKRV---EGLDQVNVCAAFASGVVSSAIGDDGSLW 141
           +++WG N + +LGR   +S      P +V   +G+ +    A  A G  S A+G DG+L+
Sbjct: 369 IYSWGDNTQGELGRNT-DSENPGTLPNKVILPKGVTKYTAIA--AQGWCSLAMGSDGNLY 425

Query: 142 VWGKSKRGQLGLGKDI-TEAIVPSRVEALAG-EKIVKVSFGWGHALAQTEDGKLFGWGYS 199
            WG +  GQ+G   D  T+ I P +V    G  +  +   G  H LA   DG L+ WG  
Sbjct: 426 SWGYNSYGQMGRDTDTPTQNIDPGKVTLPPGVTRFTQFGAGNQHTLAVGSDGNLYSWG-- 483

Query: 200 ADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPF 259
              + G LG+       D+N  R++   +             VS                
Sbjct: 484 -SNKFGQLGR-------DANSLRNATPGK-------------VS---------------- 506

Query: 260 LVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQ-----DMGMFPVDINFHP 314
           L  G+  + I      SL+LG +G L S G N   QLGR        D G      +  P
Sbjct: 507 LPAGISCIQINAENTSSLILGSDGNLYSWGDNSRSQLGRTTTGHSDADPGTVTFPEDPRP 566

Query: 315 VSISSG 320
           VS+S G
Sbjct: 567 VSVSFG 572



 Score = 80.5 bits (197), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 96/346 (27%), Positives = 142/346 (41%), Gaps = 69/346 (19%)

Query: 29   VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPS------DVTSVSAGHYHSLAVTNN 82
              ++G    G LG   S T      Y PT+VP LP         T V+AG  H LA+ ++
Sbjct: 757  AYAWGGNDYGQLGQDPSTTAT---QYAPTKVP-LPDGAATGFTYTQVAAGGTHVLAIGSD 812

Query: 83   GAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLD-----QVNVCAAFASGVVSSAIGDD 137
              V++WG+N   QLG G   SR   + P+ V+G D        V A F     S+AI  +
Sbjct: 813  QTVYSWGQNQYGQLGDG---SRQDHSKPQPVKGPDGQPFKATQVTAGFTD---SAAIDLN 866

Query: 138  GSLWVWGKSKRGQLGL-GKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGW 196
            G ++VWG   + Q       +T A+      +  G K V+VS  +   +A   DG ++ W
Sbjct: 867  GRVYVWGSETKDQDTYSAPKLTPALAKDPSGSDKGLKAVQVSARYSFLMALDADGNVYTW 926

Query: 197  GYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIW 256
            GY+  G+ GN G++          D +   D + +S T +                    
Sbjct: 927  GYNNHGQFGN-GQSTGKYSTAYAADPAPVPDPKNASKTFKARM----------------- 968

Query: 257  EPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLG------REKQDMGMFPVDI 310
                        I+ G  H+L +G++G   + G N  GQ+G      R        P D 
Sbjct: 969  ------------ISVGELHALAIGQDGTAWAWGRNTSGQIGDGTLTDRSTPTQVKNPADA 1016

Query: 311  N--FHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLG 354
            +  F    I +G  +SLAI +      +G A G   WG N   QLG
Sbjct: 1017 SQAFQAAQIIAGATYSLAIDQ------SGTAWG---WGENTFDQLG 1053



 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 51/158 (32%), Positives = 69/158 (43%), Gaps = 19/158 (12%)

Query: 52   DAYEPTRVPGLPSDVTS------VSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRA 105
            D   PT+V   P+D +       + AG  +SLA+  +G  W WG N   QLG     S  
Sbjct: 1003 DRSTPTQVKN-PADASQAFQAAQIIAGATYSLAIDQSGTAWGWGENTFDQLGSNQGTSEL 1061

Query: 106  TWNDPKRVE-GLDQVNVCAAFASGVVSS------AIGDDGSLWVWGKSKRGQLGLGKDI- 157
                P +V     Q N    FA   +S+      AIG DG  + WG + RGQLG G +  
Sbjct: 1062 LV--PSQVSLPAGQDNAGKGFAVARISAGSACSLAIGQDGKSYSWGYNYRGQLGTGSNNG 1119

Query: 158  TEAIVPSRVEALAGEKIVKVSFGW--GHALAQTEDGKL 193
            T+ I P+ V       I  V F     ++L Q  DG +
Sbjct: 1120 TKTITPTLVALYPPPLITGVRFDQTAANSLRQNADGSV 1157



 Score = 52.0 bits (123), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 75/308 (24%), Positives = 120/308 (38%), Gaps = 56/308 (18%)

Query: 86  WAWGRNN-EVQLGRGALESRATWNDPKRVEGL--DQVNVCAAFASGVVSSAIGDDGSLWV 142
           WA   NN + Q G+     + T   PK   G+  +Q++    FA    S  +  DG+ + 
Sbjct: 707 WAISPNNGDAQGGQ-----QVTITPPKTSRGIRFNQISASDNFAG--FSIGVTSDGNAYA 759

Query: 143 WGKSKRGQLGLGKDITEA-IVPSRVE----ALAGEKIVKVSFGWGHALAQTEDGKLFGWG 197
           WG +  GQLG     T     P++V     A  G    +V+ G  H LA   D  ++ WG
Sbjct: 760 WGGNDYGQLGQDPSTTATQYAPTKVPLPDGAATGFTYTQVAAGGTHVLAIGSDQTVYSWG 819

Query: 198 YSADGRIGNLGKALESSPL-----DSNIDRSSESDQEISSSTIEKAQKLV----SEGMEK 248
            +  G++G+  +   S P      D    ++++     + S        V    SE  ++
Sbjct: 820 QNQYGQLGDGSRQDHSKPQPVKGPDGQPFKATQVTAGFTDSAAIDLNGRVYVWGSETKDQ 879

Query: 249 EKYMPIIWEPFLV-------EGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQ 301
           + Y      P L        +G++ V ++  +   + L  +G + + G N +GQ G  + 
Sbjct: 880 DTYSAPKLTPALAKDPSGSDKGLKAVQVSARYSFLMALDADGNVYTWGYNNHGQFGNGQS 939

Query: 302 ----------DMGMFPVDIN----FHPVSISSGLGHSLAICEVRSSNVTGGARGIV-SWG 346
                     D    P   N    F    IS G  H+LAI          G  G   +WG
Sbjct: 940 TGKYSTAYAADPAPVPDPKNASKTFKARMISVGELHALAI----------GQDGTAWAWG 989

Query: 347 WNRSSQLG 354
            N S Q+G
Sbjct: 990 RNTSGQIG 997


>gi|348528302|ref|XP_003451657.1| PREDICTED: RCC1 and BTB domain-containing protein 1 [Oreochromis
           niloticus]
          Length = 531

 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 56/156 (35%), Positives = 92/156 (58%), Gaps = 5/156 (3%)

Query: 62  LPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNV 121
           L   VT V+ G +HS+A+T+ G V+AWG NN  Q+G G+  ++ T   P+RV    Q  V
Sbjct: 126 LNKKVTEVACGSHHSMALTDTGEVYAWGYNNCGQVGSGSTANQPT---PRRVSSCLQNKV 182

Query: 122 CAAFASGVVSS-AIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFG 180
             +   G  SS A+ D+G ++ WG +  GQLGLG +  + + P R+  L G  + ++  G
Sbjct: 183 AVSIVCGQTSSLAVVDNGEVYGWGYNGNGQLGLGNNGNQ-VTPCRLVGLQGLCVQQIVSG 241

Query: 181 WGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPL 216
           + H++A T++G L+ WG +  G++G   K+ + SP+
Sbjct: 242 YAHSMALTDEGLLYAWGANTYGQLGTGNKSNQLSPV 277



 Score = 72.0 bits (175), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 77/294 (26%), Positives = 120/294 (40%), Gaps = 69/294 (23%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLP-SDVTSVSAGH-YHSLAVTNNGAVW 86
           V  FG      LG   SL+ +      P ++  L    V S+S G   H L  T +G ++
Sbjct: 43  VFVFGLNCSNCLGTGDSLSTI-----VPKKLDFLSGRKVVSLSYGSGPHILLATEDGELF 97

Query: 87  AWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVV---------SSAIGDD 137
           AWG N   QLG G              +G+  V V A   +  V         S A+ D 
Sbjct: 98  AWGHNGYSQLGNGTTN-----------QGVAPVLVSANLLNKKVTEVACGSHHSMALTDT 146

Query: 138 GSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKI-VKVSFGWGHALAQTEDGKLFGW 196
           G ++ WG +  GQ+G G    +   P RV +    K+ V +  G   +LA  ++G+++GW
Sbjct: 147 GEVYAWGYNNCGQVGSGSTANQP-TPRRVSSCLQNKVAVSIVCGQTSSLAVVDNGEVYGW 205

Query: 197 GYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIW 256
           GY+ +G++G      + +P                        +LV              
Sbjct: 206 GYNGNGQLGLGNNGNQVTPC-----------------------RLVG------------- 229

Query: 257 EPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDI 310
               ++G+ V  I  G+ HS+ L   G+L + G+N YGQLG   +   + PV I
Sbjct: 230 ----LQGLCVQQIVSGYAHSMALTDEGLLYAWGANTYGQLGTGNKSNQLSPVQI 279



 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 71/245 (28%), Positives = 108/245 (44%), Gaps = 57/245 (23%)

Query: 134 IGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWG-HALAQTEDGK 192
           I +D  ++V+G +    LG G  ++  IVP +++ L+G K+V +S+G G H L  TEDG+
Sbjct: 37  ITNDDEVFVFGLNCSNCLGTGDSLS-TIVPKKLDFLSGRKVVSLSYGSGPHILLATEDGE 95

Query: 193 LFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYM 252
           LF WG++   ++GN                   ++Q +       A  LVS  +  +K  
Sbjct: 96  LFAWGHNGYSQLGN-----------------GTTNQGV-------APVLVSANLLNKK-- 129

Query: 253 PIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDI-- 310
                        V ++ACG  HS+ L   G + + G N  GQ+G         P  +  
Sbjct: 130 -------------VTEVACGSHHSMALTDTGEVYAWGYNNCGQVGSGSTANQPTPRRVSS 176

Query: 311 ---NFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQ--LGRMGPDNVPLVV 365
              N   VSI  G   SLA+  V +  V G       WG+N + Q  LG  G    P  +
Sbjct: 177 CLQNKVAVSIVCGQTSSLAV--VDNGEVYG-------WGYNGNGQLGLGNNGNQVTPCRL 227

Query: 366 EGLEG 370
            GL+G
Sbjct: 228 VGLQG 232


>gi|114321835|ref|YP_743518.1| regulator of chromosome condensation, RCC1 [Alkalilimnicola
           ehrlichii MLHE-1]
 gi|114228229|gb|ABI58028.1| regulator of chromosome condensation, RCC1 [Alkalilimnicola
           ehrlichii MLHE-1]
          Length = 818

 Score = 99.0 bits (245), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 90/281 (32%), Positives = 134/281 (47%), Gaps = 44/281 (15%)

Query: 35  GSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEV 94
           G  G +GL     G  GD  EP +V G+ +D  ++SAG  H++AV  +G +WAWGRNN  
Sbjct: 198 GRSGRIGL-----GDSGDRDEPEQV-GVDNDWIALSAGGSHTVAVKADGTLWAWGRNNAG 251

Query: 95  QLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLG 154
           QLG G      T   P +V G D        A    S A+  DGSLW WG ++ GQLGLG
Sbjct: 252 QLGLGDTNHHYT---PTQV-GTDTDWAKKISAGRRHSLAVKADGSLWAWGDNEYGQLGLG 307

Query: 155 KDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESS 214
            D  E   P +V +        +S G  H+LA   DG L+ WGY+  G++G    A  ++
Sbjct: 308 -DTDERHAPEQVGS--NTDWAAISAGRRHSLAVKADGSLWSWGYNDSGQLGLGDTADRNA 364

Query: 215 PLDSNIDRSSESDQEISSSTIEKAQKLVSEG------------------MEKEKYMPIIW 256
           P     D    +D ++ S+  E +  + ++G                  + ++  +PI  
Sbjct: 365 PEQVGAD----TDWDLVSAGGEHSLAVKADGTLMVWGLNHLGQLGLGDTVSRDAPVPI-- 418

Query: 257 EPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLG 297
                 G+ +V    G +H++ +  +G L + G N YGQLG
Sbjct: 419 ----ASGIALV---AGRNHTVAVNPDGTLRAWGDNEYGQLG 452



 Score = 98.6 bits (244), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 100/337 (29%), Positives = 154/337 (45%), Gaps = 37/337 (10%)

Query: 31  SFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGR 90
           ++G  + G LGL     G   D   P +V G  +D  +V+A  YH+LAV N+G +WAWGR
Sbjct: 493 AWGRNNYGQLGL-----GDTDDRATPEQV-GSHTDWAAVNAASYHTLAVKNDGTLWAWGR 546

Query: 91  NNEVQLGRGALESRATWNDPKRV-EGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRG 149
           N+  QLG      R T   P+RV    D   V    +    +SA+  DG+LW WG +  G
Sbjct: 547 NSSGQLGLSDTNDRHT---PERVGSDTDWATVSVGQSH---TSAVKPDGTLWAWGWNHYG 600

Query: 150 QLGLGKDITEAIVPSRVEALAGE-KIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLG 208
           QLGLG D ++ + P   E + GE   + VS G  H +A   DG L+ WG++  G++G   
Sbjct: 601 QLGLG-DTSDRLSP---EQVGGESNWLAVSTGLHHTVAVKTDGTLWAWGWNVRGQLGLGH 656

Query: 209 KALESSPLD--SNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPI-----IWEPFLV 261
            +   +P+   S+ D ++ S     +  ++    L + G      + +        P  V
Sbjct: 657 TSDRHAPVQVGSDTDWAAVSASGYRTLAVKADGTLWAWGENNNGQLGLGDTDNRNTPAQV 716

Query: 262 -EGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFHP--VSIS 318
               +   ++ G  H+L    +  L + G N  GQLG    D    PV +       ++S
Sbjct: 717 GNDADWAAVSTGLFHTLAFKEDDTLWAWGRNHDGQLGLGDTDNRDAPVQVGNETDWSTVS 776

Query: 319 SGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGR 355
            G  H+LA     +         + +WG N S QLG+
Sbjct: 777 GGGYHTLATMSDGT---------LRAWGLNTSGQLGQ 804



 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 105/350 (30%), Positives = 156/350 (44%), Gaps = 39/350 (11%)

Query: 17  SRIFMRSASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHS 76
           S      A GT + ++G  + G LGL     G     Y PT+V         +SAG  HS
Sbjct: 231 SHTVAVKADGT-LWAWGRNNAGQLGL-----GDTNHHYTPTQVGTDTDWAKKISAGRRHS 284

Query: 77  LAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGD 136
           LAV  +G++WAWG N   QLG G  + R   + P++V      +  A  A    S A+  
Sbjct: 285 LAVKADGSLWAWGDNEYGQLGLGDTDER---HAPEQVG--SNTDWAAISAGRRHSLAVKA 339

Query: 137 DGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGW 196
           DGSLW WG +  GQLGLG D  +   P +V A     +  VS G  H+LA   DG L  W
Sbjct: 340 DGSLWSWGYNDSGQLGLG-DTADRNAPEQVGADTDWDL--VSAGGEHSLAVKADGTLMVW 396

Query: 197 GYSADGRIGNLGKALESS---PLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMP 253
           G +  G++G LG  +      P+ S I   +  +  ++   +     L + G  +   + 
Sbjct: 397 GLNHLGQLG-LGDTVSRDAPVPIASGIALVAGRNHTVA---VNPDGTLRAWGDNEYGQLG 452

Query: 254 IIWEPFLVEGVEVVDIAC-------GFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMF 306
           +    ++V   + V  +         F+HSL L  +G L + G N YGQLG    D    
Sbjct: 453 LGVMRYIVTPSQTVTGSAWAAVNGGSFNHSLGLRDDGTLWAWGRNNYGQLGLGDTDDRAT 512

Query: 307 PVDINFHP--VSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLG 354
           P  +  H    ++++   H+LA+    +         + +WG N S QLG
Sbjct: 513 PEQVGSHTDWAAVNAASYHTLAVKNDGT---------LWAWGRNSSGQLG 553



 Score = 92.0 bits (227), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 99/308 (32%), Positives = 147/308 (47%), Gaps = 30/308 (9%)

Query: 56  PTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEG 115
           P +V G  SD T+VSAG  H++AV  NG +WAWGR+  + LG          ++P++V G
Sbjct: 166 PEQV-GTDSDWTAVSAGRDHTVAVKANGTLWAWGRSGRIGLGDSGDR-----DEPEQV-G 218

Query: 116 LDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIV 175
           +D  +  A  A G  + A+  DG+LW WG++  GQLGLG D      P++V     +   
Sbjct: 219 VDN-DWIALSAGGSHTVAVKADGTLWAWGRNNAGQLGLG-DTNHHYTPTQV-GTDTDWAK 275

Query: 176 KVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSP---LDSNIDRSSESDQEISS 232
           K+S G  H+LA   DG L+ WG +  G++G LG   E      + SN D ++ S     S
Sbjct: 276 KISAGRRHSLAVKADGSLWAWGDNEYGQLG-LGDTDERHAPEQVGSNTDWAAISAGRRHS 334

Query: 233 STIEKAQKLVSEGMEKEKYMPI-----IWEPFLVEGVEVVD-IACGFDHSLVLGRNGVLL 286
             ++    L S G      + +        P  V      D ++ G +HSL +  +G L+
Sbjct: 335 LAVKADGSLWSWGYNDSGQLGLGDTADRNAPEQVGADTDWDLVSAGGEHSLAVKADGTLM 394

Query: 287 SCGSNVYGQLGREKQDMGMFPVDINFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWG 346
             G N  GQLG         PV I    +++ +G  H++A+      N  G  R   +WG
Sbjct: 395 VWGLNHLGQLGLGDTVSRDAPVPI-ASGIALVAGRNHTVAV------NPDGTLR---AWG 444

Query: 347 WNRSSQLG 354
            N   QLG
Sbjct: 445 DNEYGQLG 452



 Score = 91.3 bits (225), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 86/310 (27%), Positives = 138/310 (44%), Gaps = 43/310 (13%)

Query: 75  HSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAI 134
           HSL + ++G +WAWGRNN  QLG G  + RAT   P++V      +  A  A+   + A+
Sbjct: 481 HSLGLRDDGTLWAWGRNNYGQLGLGDTDDRAT---PEQVG--SHTDWAAVNAASYHTLAV 535

Query: 135 GDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLF 194
            +DG+LW WG++  GQLGL  D  +   P RV   +      VS G  H  A   DG L+
Sbjct: 536 KNDGTLWAWGRNSSGQLGL-SDTNDRHTPERVG--SDTDWATVSVGQSHTSAVKPDGTLW 592

Query: 195 GWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGM-------- 246
            WG++  G++G LG   ++S   S      ES+    S+ +     + ++G         
Sbjct: 593 AWGWNHYGQLG-LG---DTSDRLSPEQVGGESNWLAVSTGLHHTVAVKTDGTLWAWGWNV 648

Query: 247 --------EKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGR 298
                     +++ P+     +    +   ++     +L +  +G L + G N  GQLG 
Sbjct: 649 RGQLGLGHTSDRHAPVQ----VGSDTDWAAVSASGYRTLAVKADGTLWAWGENNNGQLGL 704

Query: 299 EKQDMGMFPVDI--NFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRM 356
              D    P  +  +    ++S+GL H+LA  E  +         + +WG N   QLG  
Sbjct: 705 GDTDNRNTPAQVGNDADWAAVSTGLFHTLAFKEDDT---------LWAWGRNHDGQLGLG 755

Query: 357 GPDNVPLVVE 366
             DN    V+
Sbjct: 756 DTDNRDAPVQ 765



 Score = 77.0 bits (188), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 84/288 (29%), Positives = 124/288 (43%), Gaps = 62/288 (21%)

Query: 69  VSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASG 128
           ++AG  H++AV  +G +WAWGRN   +LG G  + R     P++V G D  +  A  A  
Sbjct: 128 LAAGDDHTVAVKADGTLWAWGRNGYGRLGLGDTDDRDV---PEQV-GTDS-DWTAVSAGR 182

Query: 129 VVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQT 188
             + A+  +G+LW WG+S  G++GLG D  +   P +V        + +S G  H +A  
Sbjct: 183 DHTVAVKANGTLWAWGRS--GRIGLG-DSGDRDEPEQVG--VDNDWIALSAGGSHTVAVK 237

Query: 189 EDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEK 248
            DG L+ WG +  G++G        +P     D              + A+K        
Sbjct: 238 ADGTLWAWGRNNAGQLGLGDTNHHYTPTQVGTD-------------TDWAKK-------- 276

Query: 249 EKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPV 308
                               I+ G  HSL +  +G L + G N YGQLG    D    P 
Sbjct: 277 --------------------ISAGRRHSLAVKADGSLWAWGDNEYGQLGLGDTDERHAPE 316

Query: 309 DI--NFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLG 354
            +  N    +IS+G  HSLA+    S         + SWG+N S QLG
Sbjct: 317 QVGSNTDWAAISAGRRHSLAVKADGS---------LWSWGYNDSGQLG 355



 Score = 75.1 bits (183), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 79/288 (27%), Positives = 123/288 (42%), Gaps = 64/288 (22%)

Query: 71  AGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVV 130
           AG  H++AV  +G + AWG N   QLG G +    T    + V G    +  AA   G  
Sbjct: 426 AGRNHTVAVNPDGTLRAWGDNEYGQLGLGVMRYIVT--PSQTVTG----SAWAAVNGGSF 479

Query: 131 SSAIG--DDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQT 188
           + ++G  DDG+LW WG++  GQLGLG D  +   P +V +      V  +    H LA  
Sbjct: 480 NHSLGLRDDGTLWAWGRNNYGQLGLG-DTDDRATPEQVGSHTDWAAVNAASY--HTLAVK 536

Query: 189 EDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEK 248
            DG L+ WG ++ G++G          L    DR +   + + S T              
Sbjct: 537 NDGTLWAWGRNSSGQLG----------LSDTNDRHTP--ERVGSDT-------------- 570

Query: 249 EKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPV 308
                           +   ++ G  H+  +  +G L + G N YGQLG       + P 
Sbjct: 571 ----------------DWATVSVGQSHTSAVKPDGTLWAWGWNHYGQLGLGDTSDRLSPE 614

Query: 309 DI--NFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLG 354
            +    + +++S+GL H++A+        T G   + +WGWN   QLG
Sbjct: 615 QVGGESNWLAVSTGLHHTVAVK-------TDGT--LWAWGWNVRGQLG 653


>gi|108756969|ref|YP_633591.1| RCC1 repeat-containing protein [Myxococcus xanthus DK 1622]
 gi|108460849|gb|ABF86034.1| RCC1 repeat domain protein [Myxococcus xanthus DK 1622]
          Length = 669

 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 88/289 (30%), Positives = 139/289 (48%), Gaps = 34/289 (11%)

Query: 38  GALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLG 97
           GALG  T+ T      Y P +V GL +   SV+AG   SLA+  +G VWAWG N   +LG
Sbjct: 400 GALGDGTTST-----QYAPVQVSGL-TGAISVAAGSSFSLALDADGTVWAWGMNGSGELG 453

Query: 98  RGALESRATWNDPKRVEGLDQVNVCAAFASGVVSS-AIGDDGSLWVWGKSKRGQLGLGKD 156
            G    R T   P RV GL  +    A A+G   S A+G DG++W WG +  G+LG G  
Sbjct: 454 DGTTTDRLT---PVRVSGLSNIT---ALAAGTGHSLALGADGTVWAWGLNFHGELGDGTT 507

Query: 157 ITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPL 216
           ++  + P +V  L G  ++ V+ G  H++A   DG ++ WG++  G +G+       SP+
Sbjct: 508 VSRPL-PVQVPGLTG--VIAVAAGMYHSVALRNDGTVWAWGWNLKGELGDGTTTQRESPV 564

Query: 217 D--------SNIDRSSESDQEISSSTI----EKAQKLVSEGMEKEKYMPIIWEPFLVEGV 264
                    +       S   +S +T+    +   + + +G   +++  +      V G+
Sbjct: 565 QVPGVTGAIAVAAGGYHSLALLSDNTLRAWGKNEDRQLGDGTNTDRHTAV-----QVSGL 619

Query: 265 E-VVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINF 312
             V  +  G  HSL+L  +  + + GS+V GQLG      G  PV ++ 
Sbjct: 620 TGVTSVFAGGGHSLILRNDQAVWAFGSDVSGQLGDGNTPSGHGPVQVSL 668



 Score = 84.7 bits (208), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 87/307 (28%), Positives = 132/307 (42%), Gaps = 72/307 (23%)

Query: 69  VSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGL-DQVNVCAAFAS 127
           VS G  HSLA+  NG +W+WG N+  QLG    E+ AT + P +V GL D   V    A 
Sbjct: 326 VSGGVSHSLAIRGNGTLWSWGHNSFGQLGD---ETNATRHAPVQVPGLTDATAVAGGHAH 382

Query: 128 GVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQ 187
            + S A   DG++W WG +  G LG G   T+   P +V  L G   + V+ G   +LA 
Sbjct: 383 SLASRA---DGTVWAWGLNG-GALGDGTTSTQ-YAPVQVSGLTGA--ISVAAGSSFSLAL 435

Query: 188 TEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGME 247
             DG ++ WG +  G +G                                      +G  
Sbjct: 436 DADGTVWAWGMNGSGELG--------------------------------------DGTT 457

Query: 248 KEKYMPIIWEPFLVEGV-EVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMF 306
            ++  P+      V G+  +  +A G  HSL LG +G + + G N +G+LG         
Sbjct: 458 TDRLTPV-----RVSGLSNITALAAGTGHSLALGADGTVWAWGLNFHGELGDGTTVSRPL 512

Query: 307 PVDIN--FHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLG------RMGP 358
           PV +      +++++G+ HS+A+   R+         + +WGWN   +LG      R  P
Sbjct: 513 PVQVPGLTGVIAVAAGMYHSVAL---RNDGT------VWAWGWNLKGELGDGTTTQRESP 563

Query: 359 DNVPLVV 365
             VP V 
Sbjct: 564 VQVPGVT 570



 Score = 46.2 bits (108), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 56/211 (26%), Positives = 95/211 (45%), Gaps = 32/211 (15%)

Query: 177 VSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLD-SNIDRSSESDQEISSSTI 235
           VS G  H+LA   +G L+ WG+++ G++G+   A   +P+    +  ++      + S  
Sbjct: 326 VSGGVSHSLAIRGNGTLWSWGHNSFGQLGDETNATRHAPVQVPGLTDATAVAGGHAHSLA 385

Query: 236 EKAQKLV----------SEGMEKEKYMPIIWEPFLVEGVE-VVDIACGFDHSLVLGRNGV 284
            +A   V           +G    +Y P+      V G+   + +A G   SL L  +G 
Sbjct: 386 SRADGTVWAWGLNGGALGDGTTSTQYAPV-----QVSGLTGAISVAAGSSFSLALDADGT 440

Query: 285 LLSCGSNVYGQLGREKQDMGMFPVDIN--FHPVSISSGLGHSLAICEVRSSNVTGGARGI 342
           + + G N  G+LG       + PV ++   +  ++++G GHSLA+          GA G 
Sbjct: 441 VWAWGMNGSGELGDGTTTDRLTPVRVSGLSNITALAAGTGHSLAL----------GADGT 490

Query: 343 V-SWGWNRSSQLGRMGPDNVPLVVE--GLEG 370
           V +WG N   +LG     + PL V+  GL G
Sbjct: 491 VWAWGLNFHGELGDGTTVSRPLPVQVPGLTG 521


>gi|218185898|gb|EEC68325.1| hypothetical protein OsI_36421 [Oryza sativa Indica Group]
          Length = 425

 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 104/348 (29%), Positives = 164/348 (47%), Gaps = 50/348 (14%)

Query: 32  FGDGSQGALGLPTSLTGVGGDAYEPTRVP----GLP-----SDVTSVSAGHYHSLAVTNN 82
           +G+G  G LG+     G     + PT  P    G P         S++ G  H+L +T +
Sbjct: 37  WGNGDYGRLGM-----GALESRWSPTACPFFLTGRPGDDDDDPPASLACGGAHTLFLTES 91

Query: 83  GAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWV 142
           G V+A G N+  QLG G+  + +   +P  V G D+  V    A    S A+  DG L+ 
Sbjct: 92  GRVFAAGLNDFGQLGIGSSVTHSL--EPIEVSGFDE-KVVEVSAGNHHSCAVTADGKLFA 148

Query: 143 WGKSKRGQLGLGKDITEAI-VPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSAD 201
           WG++  GQLGLGK   + +  P +V+ LA  ++  V+ G  H++A TE+G++  WG +  
Sbjct: 149 WGRNSSGQLGLGKRAGKVVSTPRKVDCLADSRVKMVALGSEHSIATTEEGEVLSWGAAGA 208

Query: 202 GRIGN------LGKALESSPLDSNIDRSSESDQ-------EISSSTIEKAQKLVSEGMEK 248
           GR+G+      LG ++ +S     + ++ +  +        + S+ I++   L   G + 
Sbjct: 209 GRLGHGHKTSILGFSITTSEYTPRLIKNLDGVKIKRIAAGMLHSACIDEKGTLFIFGQKT 268

Query: 249 EKYMPIIWE---PFLVEGVEVVD-IACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMG 304
           EK      +   P +VE V   + +ACG  H+ V+  +G L S GSN  G LG    DM 
Sbjct: 269 EKGFGRSGDELRPTVVEEVPFSEEVACGGYHTCVVTDSGDLYSWGSNENGCLGLGGTDMV 328

Query: 305 MFP----VDINFHPVS-ISSGLGHSLAICEVRSSNVTGGARGIVSWGW 347
             P      +   PVS +S G  H+  I        +GG   I +WGW
Sbjct: 329 RSPEVLKSSLFKFPVSKVSCGWKHTAVI--------SGGD--IYTWGW 366



 Score = 88.2 bits (217), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 87/326 (26%), Positives = 138/326 (42%), Gaps = 41/326 (12%)

Query: 38  GALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLG 97
           G LG+ +S+T     + EP  V G    V  VSAG++HS AVT +G ++AWGRN+  QLG
Sbjct: 103 GQLGIGSSVT----HSLEPIEVSGFDEKVVEVSAGNHHSCAVTADGKLFAWGRNSSGQLG 158

Query: 98  RGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKD- 156
            G    +   + P++V+ L    V         S A  ++G +  WG +  G+LG G   
Sbjct: 159 LGKRAGKVV-STPRKVDCLADSRVKMVALGSEHSIATTEEGEVLSWGAAGAGRLGHGHKT 217

Query: 157 -------ITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGK 209
                   T    P  ++ L G KI +++ G  H+    E G LF +G   +   G  G 
Sbjct: 218 SILGFSITTSEYTPRLIKNLDGVKIKRIAAGMLHSACIDEKGTLFIFGQKTEKGFGRSGD 277

Query: 210 ALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYM----------PIIWEPF 259
            L  + ++        +     +  +  +  L S G  +   +          P + +  
Sbjct: 278 ELRPTVVEEVPFSEEVACGGYHTCVVTDSGDLYSWGSNENGCLGLGGTDMVRSPEVLKSS 337

Query: 260 LVEGVEVVDIACGFDHSLVL-----------GRNGVLLSCGSNVYGQLGREKQDMGMF-P 307
           L +   V  ++CG+ H+ V+           G NG     G +  GQLG    D+  F P
Sbjct: 338 LFK-FPVSKVSCGWKHTAVISGGDIYTWGWGGANGTFFEEGHSSGGQLG-HGNDVDYFEP 395

Query: 308 VDINF----HPVSISSGLGHSLAICE 329
           + + F      V +S G  H+ AI E
Sbjct: 396 MMVEFGKNARAVHVSCGFNHTGAIFE 421


>gi|440230900|ref|YP_007344693.1| RCC1 domain-containing protein, alpha-tubulin suppressor [Serratia
            marcescens FGI94]
 gi|440052605|gb|AGB82508.1| RCC1 domain-containing protein, alpha-tubulin suppressor [Serratia
            marcescens FGI94]
          Length = 1812

 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 81/278 (29%), Positives = 134/278 (48%), Gaps = 26/278 (9%)

Query: 64   SDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRV--EGLDQVNV 121
            S VT+V+AG YH+L + +   +WAWG N + QLG G   +   +  P +V  E L    V
Sbjct: 1538 SKVTAVAAGRYHNLVLDDQSRLWAWGHNGDGQLGDGT-RTNVAYPLPIQVDLEPLAGSTV 1596

Query: 122  CAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALA--GEKIVKVSF 179
               +A    S  + D G LWVWGK+K G+LG G   T    P  V+ L   G K++ VS 
Sbjct: 1597 TGVWAGDFHSIILDDLGRLWVWGKNKYGELGDGT-TTYQTRPVLVDLLPLNGRKVMAVSA 1655

Query: 180  GWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEI--------S 231
            G  H +A  E G L+ WG +  GR+G+        P+   +D +S    ++        +
Sbjct: 1656 GEHHTVALDEQGGLWAWGLNDSGRLGDGSTTDRHRPV--QVDLTSLDGHKVVAISAGGWN 1713

Query: 232  SSTIEKAQK----------LVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGR 281
            +  +++  +          L+ +G    ++ P+  +   + G +VV ++ G  +  V+  
Sbjct: 1714 TVALDELGRLWAWGPNESGLLGDGTTINQHRPVQVDLTPLNGRKVVAVSAGSFYFFVVDD 1773

Query: 282  NGVLLSCGSNVYGQLGREKQDMGMFPVDINFHPVSISS 319
             G L + GSN YGQLG   +   + PV ++   ++ +S
Sbjct: 1774 RGELWAWGSNSYGQLGDGTKTRRLKPVRVDMSAMNNTS 1811



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 79/299 (26%), Positives = 123/299 (41%), Gaps = 55/299 (18%)

Query: 65   DVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGAL--ESRATWNDPKRVEGLDQVNVC 122
            D   ++AG  HSL + N   +W+WG N +  LG G     +R    D   + G   V++ 
Sbjct: 1429 DKNRMAAGSLHSLILDNKDRIWSWGFNRDGMLGDGTNRDRTRPVLTDLTPLGGSTVVSIS 1488

Query: 123  AAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITE-AIVPSRVEALAGEKIVKVSFGW 181
               +    S AI D G LW WG +  G LG G  I     V   + +L   K+  V+ G 
Sbjct: 1489 TG-SGASRSQAIDDQGRLWAWGYNFAGALGDGTGIDRNRPVLVDLASLGSSKVTAVAAGR 1547

Query: 182  GHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKL 241
             H L   +  +L+ WG++ DG++G+  +   + PL   +D                    
Sbjct: 1548 YHNLVLDDQSRLWAWGHNGDGQLGDGTRTNVAYPLPIQVD-------------------- 1587

Query: 242  VSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQ 301
                           EP  + G  V  +  G  HS++L   G L   G N YG+LG    
Sbjct: 1588 --------------LEP--LAGSTVTGVWAGDFHSIILDDLGRLWVWGKNKYGELGDGTT 1631

Query: 302  DMGMFPVDINFHPV------SISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLG 354
                 PV ++  P+      ++S+G  H++A+ E           G+ +WG N S +LG
Sbjct: 1632 TYQTRPVLVDLLPLNGRKVMAVSAGEHHTVALDE---------QGGLWAWGLNDSGRLG 1681


>gi|391344583|ref|XP_003746575.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC4-like
           [Metaseiulus occidentalis]
          Length = 1152

 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 88/346 (25%), Positives = 150/346 (43%), Gaps = 69/346 (19%)

Query: 12  VNVLTSRIFMRSASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVP-GLPS----DV 66
           +N + SR   R  +    + FG+ + G LGL       GG      RVP  +P      V
Sbjct: 1   MNRMGSRSRSRQRAQNWTLGFGNTNSGELGL-------GGIEDHIVRVPRSIPQLEGIRV 53

Query: 67  TSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFA 126
             ++ G +H+L +T++G V + G N+  QLG+       +   P+ V  L  + +     
Sbjct: 54  RQIATGAHHTLVLTSHGRVLSCGSNDHDQLGQ-----EVSTTKPEPVTALQCLRIVQVCC 108

Query: 127 SGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALA 186
               S A+ + G +++WG + +GQLG G+     + P  V+ LA   +V+++ G  H LA
Sbjct: 109 GQQHSMALTEAGQVYMWGSNSKGQLGNGEGQESRLSPRFVKTLAPFTVVQIACGSNHCLA 168

Query: 187 QTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGM 246
              +G L+ WG + +G++G                            T+ + Q++  E  
Sbjct: 169 LLNNGALYAWGDNGNGQLG--------------------------IGTVGEPQRVPVEVT 202

Query: 247 EKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMF 306
                         + G+ +  IACG +HS+VL ++GV+   GSN +GQLG        F
Sbjct: 203 N-------------LLGLPLSQIACGANHSMVLSKSGVIFVWGSNRFGQLGLSDNKDRAF 249

Query: 307 PVDINF----HPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWN 348
           P  +      H   I++G  HS A+             G+ ++GW+
Sbjct: 250 PTLLKTLRQQHVKFIAAGGAHSAALT---------AHGGVFTFGWS 286



 Score = 72.0 bits (175), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 90/333 (27%), Positives = 143/333 (42%), Gaps = 45/333 (13%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDA-YEPTRVPGL-PSDVTSVSAGHYHSLAVTNNGAVW 86
           V  +G  S+G LG      G G ++   P  V  L P  V  ++ G  H LA+ NNGA++
Sbjct: 122 VYMWGSNSKGQLG-----NGEGQESRLSPRFVKTLAPFTVVQIACGSNHCLALLNNGALY 176

Query: 87  AWGRNNEVQLGRGALESRATWNDPKRVE---------GLDQVNVCAAFASGVVSSAIGDD 137
           AWG N   QLG G      T  +P+RV           L Q+  C A  S V+S +    
Sbjct: 177 AWGDNGNGQLGIG------TVGEPQRVPVEVTNLLGLPLSQI-ACGANHSMVLSKS---- 225

Query: 138 GSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKL--FG 195
           G ++VWG ++ GQLGL  +   A  P+ ++ L  + +  ++ G  H+ A T  G +  FG
Sbjct: 226 GVIFVWGSNRFGQLGLSDNKDRAF-PTLLKTLRQQHVKFIAAGGAHSAALTAHGGVFTFG 284

Query: 196 WGYSADGRIGNLGKALESSPLDSNIDRSSES--DQEISSSTIEKAQKLVSEGMEKEKYMP 253
           W +     +    +  ES+P  S + R   S  ++E    +     +L   G + ++  P
Sbjct: 285 WSFYESHEVRISLRGTESNP-QSALARKLFSLIEREFCRHSYGSYGQL-GHGSKNDQLTP 342

Query: 254 IIWEPFLVEGVEVVDIACGFDHSLVLGRN-GVLLSCGSNVYGQLGREKQDMGMFPVDINF 312
           +  +  +  G  +  IA G  H++      G + + G    GQLG          V +  
Sbjct: 343 MKIQELM--GTTITQIALGRCHTVCYAPTVGKVFTFGLGGNGQLGSS--------VSMVS 392

Query: 313 HPVSISSGLGHSLAICEVRSSNVTGGARGIVSW 345
            P  ++   G SL I   R S+        + W
Sbjct: 393 TPTPLAGNWGKSLEIKLFRRSSTKSDQTNQIDW 425



 Score = 64.3 bits (155), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 75/273 (27%), Positives = 110/273 (40%), Gaps = 59/273 (21%)

Query: 88  WGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSK 147
           +G  N  +LG G +E       P+ +  L+ + V         +  +   G +   G + 
Sbjct: 21  FGNTNSGELGLGGIEDHIV-RVPRSIPQLEGIRVRQIATGAHHTLVLTSHGRVLSCGSND 79

Query: 148 RGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNL 207
             QLG     T+   P  V AL   +IV+V  G  H++A TE G+++ WG ++ G++GN 
Sbjct: 80  HDQLGQEVSTTK---PEPVTALQCLRIVQVCCGQQHSMALTEAGQVYMWGSNSKGQLGN- 135

Query: 208 GKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVV 267
           G+  ES                +S   ++                     PF      VV
Sbjct: 136 GEGQES---------------RLSPRFVKT------------------LAPF-----TVV 157

Query: 268 DIACGFDHSLVLGRNGVLLSCGSNVYGQLGR----EKQDMGMFPVDINFHPVSISSGLGH 323
            IACG +H L L  NG L + G N  GQLG     E Q +          PV +++ LG 
Sbjct: 158 QIACGSNHCLALLNNGALYAWGDNGNGQLGIGTVGEPQRV----------PVEVTNLLGL 207

Query: 324 SLA--ICEVRSSNVTGGARGIVSWGWNRSSQLG 354
            L+   C    S V   +  I  WG NR  QLG
Sbjct: 208 PLSQIACGANHSMVLSKSGVIFVWGSNRFGQLG 240


>gi|403355850|gb|EJY77515.1| RCC1 and BTB domain-containing protein, putative [Oxytricha
           trifallax]
          Length = 546

 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 88/283 (31%), Positives = 140/283 (49%), Gaps = 39/283 (13%)

Query: 70  SAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCA---AFA 126
           S G  H +A+TNNG V+++G N + QLG G    + + N PK+VE L +  V A   ++ 
Sbjct: 72  SNGCEHVIALTNNGKVFSFGFNVKGQLGHG---DQTSINSPKQVEALSRKFVTAVGCSYY 128

Query: 127 SGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALA 186
             + S A  D+  ++  G++  GQLGLG ++ +   P+ +EAL G++IV +  G  H++ 
Sbjct: 129 HTIFSCA--DEMEIYSCGRNDYGQLGLG-NLDDKNSPTLIEALNGKRIVSIGCGQYHSVV 185

Query: 187 QTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQ------- 239
            + DG++F +G +  G++G  G        D NI    E  + + S+ I           
Sbjct: 186 SSIDGEIFSFGRNDSGQLGITGS-------DGNISLPKEV-KNLKSTQIACGYYHTVAIN 237

Query: 240 --KLVSEGMEKEKYMPI-IWE-----PFLV---EGVEVVDIACGFDHSLVLGRNGVLLSC 288
             +L S G      + I I+      P LV   E  E+V +ACG  H+L LG  G L S 
Sbjct: 238 NGQLYSWGKNDSGQLGIGIYSAKEILPTLVRDLEDQEIVSVACGCYHTLALGYAGQLFSF 297

Query: 289 GSNVYGQLGREKQDMGMFPV----DINFHPVSISSGLGHSLAI 327
           G N +GQLG    +    P+     I+     I++G  HS+ +
Sbjct: 298 GRNSHGQLGDGTTNNSCKPLLIQGLIDKKVCQIAAGFYHSIVL 340



 Score = 87.0 bits (214), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 58/185 (31%), Positives = 92/185 (49%), Gaps = 12/185 (6%)

Query: 23  SASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLP-SDVTSVSAGHYHSLAVTN 81
            A    + S G    G LGL     G   D   PT +  L    + S+  G YHS+  + 
Sbjct: 134 CADEMEIYSCGRNDYGQLGL-----GNLDDKNSPTLIEALNGKRIVSIGCGQYHSVVSSI 188

Query: 82  NGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLW 141
           +G ++++GRN+  QLG     S    + PK V+ L    +    A G   +   ++G L+
Sbjct: 189 DGEIFSFGRNDSGQLGITG--SDGNISLPKEVKNLKSTQI----ACGYYHTVAINNGQLY 242

Query: 142 VWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSAD 201
            WGK+  GQLG+G    + I+P+ V  L  ++IV V+ G  H LA    G+LF +G ++ 
Sbjct: 243 SWGKNDSGQLGIGIYSAKEILPTLVRDLEDQEIVSVACGCYHTLALGYAGQLFSFGRNSH 302

Query: 202 GRIGN 206
           G++G+
Sbjct: 303 GQLGD 307



 Score = 68.9 bits (167), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 88/323 (27%), Positives = 139/323 (43%), Gaps = 67/323 (20%)

Query: 65  DVTSVSAGHYHSLAVTNNGAVWAWGRN---NEVQLGRGALESRATWNDP-----KRVEGL 116
           +V  V+AG+ H+L +T+ G V++ G N   N +  G  A+      N+      K VE L
Sbjct: 2   NVIQVAAGNEHTLILTDCGDVYSGGYNEMGNSLSQGPNAMSQNNNNNNTRTGQLKLVEKL 61

Query: 117 DQVNVCAAFASGVVSS--AIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKI 174
              N+   FAS       A+ ++G ++ +G + +GQLG G D T    P +VEAL+ + +
Sbjct: 62  RGKNIVKIFASNGCEHVIALTNNGKVFSFGFNVKGQLGHG-DQTSINSPKQVEALSRKFV 120

Query: 175 VKVSFGWGHALAQTEDG-KLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSS 233
             V   + H +    D  +++  G +  G++G LG          N+D            
Sbjct: 121 TAVGCSYYHTIFSCADEMEIYSCGRNDYGQLG-LG----------NLD------------ 157

Query: 234 TIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVY 293
                          +K  P + E   + G  +V I CG  HS+V   +G + S G N  
Sbjct: 158 ---------------DKNSPTLIEA--LNGKRIVSIGCGQYHSVVSSIDGEIFSFGRNDS 200

Query: 294 GQLGREKQDMGM-FPVDI-NFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSS 351
           GQLG    D  +  P ++ N     I+ G  H++AI          G   + SWG N S 
Sbjct: 201 GQLGITGSDGNISLPKEVKNLKSTQIACGYYHTVAI--------NNGQ--LYSWGKNDSG 250

Query: 352 QLG---RMGPDNVPLVVEGLEGE 371
           QLG       + +P +V  LE +
Sbjct: 251 QLGIGIYSAKEILPTLVRDLEDQ 273



 Score = 42.7 bits (99), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 5/80 (6%)

Query: 56  PTRVPGLP-SDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVE 114
           PT V  L   ++ SV+ G YH+LA+   G ++++GRN+  QLG G   +      P  ++
Sbjct: 264 PTLVRDLEDQEIVSVACGCYHTLALGYAGQLFSFGRNSHGQLGDGTTNNSCK---PLLIQ 320

Query: 115 GLDQVNVCAAFASGVVSSAI 134
           GL    VC   A+G   S +
Sbjct: 321 GLIDKKVC-QIAAGFYHSIV 339


>gi|443293653|ref|ZP_21032747.1| Regulator of chromosome condensation, RCC1 [Micromonospora lupini
           str. Lupac 08]
 gi|385883511|emb|CCH20898.1| Regulator of chromosome condensation, RCC1 [Micromonospora lupini
           str. Lupac 08]
          Length = 710

 Score = 98.6 bits (244), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 87/317 (27%), Positives = 139/317 (43%), Gaps = 28/317 (8%)

Query: 52  DAYEPTRVPGLPSDVT--SVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWND 109
           D   P RV  LP+  T   V+AG  HSLA+T+ G V AWG N    LG G     +  ND
Sbjct: 85  DKLSPVRV-HLPTGTTISDVAAGAVHSLALTSTGTVLAWGTNYYGVLGNGTKTDNSAQND 143

Query: 110 ---PKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRV 166
              P  V       V +  AS   S A+   G++  WG + +GQLG G + T++ +P  +
Sbjct: 144 SYVPAAVHLPAGTTVTSVAASSTYSLALTATGTVLAWGNNDQGQLGNGTN-TDSYLPVPL 202

Query: 167 EALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSP----LDSNIDR 222
              A   I  ++    H LA T +G +  WG +  G++GN      ++P    L +    
Sbjct: 203 ALPAATTITAIAAATNHGLALTSNGTVLAWGSNGSGQLGNGNTTNSNTPVTVALPAGTTI 262

Query: 223 SSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRN 282
           ++ +     S  +     +++ G +    +PI++      G+ +  +A G DHSL L   
Sbjct: 263 TAIAAAGSHSMALTSTGTVLTWGQDTVLPIPIVFP----AGITITAVASGNDHSLALTST 318

Query: 283 GVLLSCGSNVYGQLGREKQDMGMFPVDINFHP----VSISSGLGHSLAICEVRSSNVTGG 338
           G + + G+N +G LG         PV  +        +I+ G   SLA+           
Sbjct: 319 GKVFTWGANYFGSLGNGTFANSSVPVPASVPTDTTITAIAGGNAQSLALTSTGK------ 372

Query: 339 ARGIVSWGWNRSSQLGR 355
              +++WG N   Q+G 
Sbjct: 373 ---LLAWGRNNYGQVGN 386



 Score = 80.1 bits (196), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 93/327 (28%), Positives = 138/327 (42%), Gaps = 77/327 (23%)

Query: 23  SASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVP-GLPSDVTSVSAGHY--HSLAV 79
           +A+GT V+++G+  QG LG      G   D+Y P  VP  LP+  T  +      H LA+
Sbjct: 172 TATGT-VLAWGNNDQGQLG-----NGTNTDSYLP--VPLALPAATTITAIAAATNHGLAL 223

Query: 80  TNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGS 139
           T+NG V AWG N   QLG G   +    N P  V       + A  A+G  S A+   G+
Sbjct: 224 TSNGTVLAWGSNGSGQLGNGNTTNS---NTPVTVALPAGTTITAIAAAGSHSMALTSTGT 280

Query: 140 LWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYS 199
           +  WG+             + ++P  +   AG  I  V+ G  H+LA T  GK+F WG +
Sbjct: 281 VLTWGQ-------------DTVLPIPIVFPAGITITAVASGNDHSLALTSTGKVFTWGAN 327

Query: 200 ADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPF 259
             G +GN   A  S P+ +++     +D  I++                           
Sbjct: 328 YFGSLGNGTFANSSVPVPASV----PTDTTITA--------------------------- 356

Query: 260 LVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQD-----MGM-FPVDINFH 313
                    IA G   SL L   G LL+ G N YGQ+G   +      MG+  PV ++  
Sbjct: 357 ---------IAGGNAQSLALTSTGKLLAWGRNNYGQVGNGTRTGSWPGMGVSVPVPVSLA 407

Query: 314 P----VSISSGLGHSLAICEVRSSNVT 336
                 +++ G  HSLA+   R+   T
Sbjct: 408 ADTKITTMAGGYYHSLAVAAERAPTST 434



 Score = 59.3 bits (142), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 58/218 (26%), Positives = 87/218 (39%), Gaps = 48/218 (22%)

Query: 143 WGKSKRGQLGLGK-DITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSAD 201
           WG+   G LG+G   + + + P RV    G  I  V+ G  H+LA T  G +  WG +  
Sbjct: 68  WGRDGYGALGVGTATLDDKLSPVRVHLPTGTTISDVAAGAVHSLALTSTGTVLAWGTNYY 127

Query: 202 GRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLV 261
           G +GN           +  D S+++D                       Y+P      L 
Sbjct: 128 GVLGN----------GTKTDNSAQND----------------------SYVPAAVH--LP 153

Query: 262 EGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFHPVSISSGL 321
            G  V  +A    +SL L   G +L+ G+N  GQLG         PV +     +  + +
Sbjct: 154 AGTTVTSVAASSTYSLALTATGTVLAWGNNDQGQLGNGTNTDSYLPVPLALPAATTITAI 213

Query: 322 ----GHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGR 355
                H LA+    +SN T     +++WG N S QLG 
Sbjct: 214 AAATNHGLAL----TSNGT-----VLAWGSNGSGQLGN 242


>gi|146295924|ref|YP_001179695.1| regulator of chromosome condensation, RCC1 [Caldicellulosiruptor
           saccharolyticus DSM 8903]
 gi|145409500|gb|ABP66504.1| regulator of chromosome condensation, RCC1 [Caldicellulosiruptor
           saccharolyticus DSM 8903]
          Length = 730

 Score = 98.6 bits (244), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 113/394 (28%), Positives = 168/394 (42%), Gaps = 89/394 (22%)

Query: 2   RLLKSVVHNHVNVLTS---RIFMRSASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTR 58
           R L + V  HV +  +    +     SG  +  +G+   G LG      G       P +
Sbjct: 79  RYLPTKVMEHVKIAKAGWAHVLAIDQSGN-LYCWGNNEYGQLG-----DGTKESKTTPVK 132

Query: 59  VPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQ 118
           + G   +V +++AG+YHSLAVT NG ++AWG N+  QLG G   +R   N P ++     
Sbjct: 133 ILG---NVVAIAAGNYHSLAVTKNGDLYAWGLNDRGQLGNG---TRVDCNKPIKI----M 182

Query: 119 VNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVS 178
            NV    A    S AI  +G L+ WG ++ GQLG G  I + I P  V+ ++G  +  VS
Sbjct: 183 TNVKDVAAGWYTSFAITKNGDLYGWGANEVGQLGDGSKI-DKIKP--VKIMSG--VQSVS 237

Query: 179 FGWGHALAQTEDGKLFGWGYSADGRIG---NLGKALESSPLDSN---------------- 219
            G  H LA T+ G+L+ WGY+ D  +G     GK     P+  N                
Sbjct: 238 AGSNHVLALTKKGELYAWGYNNDSELGFDPGWGKNFSEKPVRVNFKDIKGISYIYAGESY 297

Query: 220 ---IDRS-----------------SESDQEISSSTIE-KAQKLVSEGM--------EKEK 250
              ID++                 ++  Q  +   +E K  K++S  M         K+K
Sbjct: 298 SLLIDKNGVLWGLGRGYTDTIVIKNKFRQSNNGKLMEFKPVKIMSNVMLASGKLAVTKDK 357

Query: 251 YMPIIWE---PFLVEGVEVVD-----------IACGFDHSLVLGRNGVLLSCGSNVYGQL 296
            + I      PF+    E VD            + G DHSL L ++G L   G+N Y QL
Sbjct: 358 KLYIFCNNTGPFIFGAPERVDRPVLIMKNVSLCSAGADHSLALTKDGKLYGWGNNSYNQL 417

Query: 297 GREKQDMGMFP--VDINF-HPVSISSGLGHSLAI 327
           G   ++    P  +DIN    + I +G   S  I
Sbjct: 418 GNGTKNPLCRPTKIDINVGEIIGILAGTQRSFLI 451



 Score = 74.7 bits (182), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 81/290 (27%), Positives = 131/290 (45%), Gaps = 74/290 (25%)

Query: 66  VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAF 125
           +  V  G   +LA+T NG ++ W      +LG G LESR     P +V  ++ V +  A 
Sbjct: 48  IVYVDTGGNQNLAITENGELYEW------ELG-GTLESRYL---PTKV--MEHVKIAKAG 95

Query: 126 ASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHAL 185
            + V+  AI   G+L+ WG ++ GQLG   D T+    + V+ L    +V ++ G  H+L
Sbjct: 96  WAHVL--AIDQSGNLYCWGNNEYGQLG---DGTKESKTTPVKILGN--VVAIAAGNYHSL 148

Query: 186 AQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEG 245
           A T++G L+ WG +  G++GN       + +D N                 K  K+++  
Sbjct: 149 AVTKNGDLYAWGLNDRGQLGN------GTRVDCN-----------------KPIKIMT-- 183

Query: 246 MEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGM 305
                               V D+A G+  S  + +NG L   G+N  GQLG   +   +
Sbjct: 184 -------------------NVKDVAAGWYTSFAITKNGDLYGWGANEVGQLGDGSKIDKI 224

Query: 306 FPVDINFHPVSISSGLGHSLAICEVRSSNVTGGARG-IVSWGWNRSSQLG 354
            PV I     S+S+G  H LA+ +          +G + +WG+N  S+LG
Sbjct: 225 KPVKIMSGVQSVSAGSNHVLALTK----------KGELYAWGYNNDSELG 264



 Score = 61.2 bits (147), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 58/192 (30%), Positives = 97/192 (50%), Gaps = 13/192 (6%)

Query: 15  LTSRIFMRSASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHY 74
           +T+ +   SA    ++   DG+  AL   TS  G      E   +  + ++V S+++G+ 
Sbjct: 534 ITNNVDKISAGYQTLILKKDGTLYALKGKTSWKG-SHTQIESYVIEKVLNNVVSMASGYD 592

Query: 75  HSLAVTNNGAVWAWGRN-NEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSA 133
           H LAVT +G+++AWG +    ++G G        + P +V  +D V + AA A+   S A
Sbjct: 593 HCLAVTKDGSLYAWGSDPAHGEIGNGIAIPNLRIDKPVKV--MDNVKMVAAGANR--SFA 648

Query: 134 IGDDGSLWVWGKSKRGQLG-LGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGK 192
           +  +G ++ WG +    LG LG D      P  V+   G   V +S   GH LA T +G 
Sbjct: 649 LTKNGEVYAWGFN----LGTLGTDTDSWYEPRPVKVFEGA--VWISCKGGHVLALTREGD 702

Query: 193 LFGWGYSADGRI 204
           L+GWG ++ G++
Sbjct: 703 LYGWGDNSLGQV 714



 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 69/310 (22%), Positives = 133/310 (42%), Gaps = 36/310 (11%)

Query: 62  LPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNV 121
           +  +V+  SAG  HSLA+T +G ++ WG N+  QLG G   ++     P +++ ++   +
Sbjct: 383 IMKNVSLCSAGADHSLALTKDGKLYGWGNNSYNQLGNG---TKNPLCRPTKID-INVGEI 438

Query: 122 CAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGW 181
               A    S  I   G L+ WG +    +    D +   + S+ + +  E I +V    
Sbjct: 439 IGILAGTQRSFLINKKGELFGWGSNINNTI----DFSNNKIISKPKMVLKE-IRQVDTNQ 493

Query: 182 GHALAQTEDGKLFGWGYSADGRIGNLGKAL------ESSPLDSNIDRSSESDQEISSSTI 235
                 T++GK++   +        L   +      +   + +N+D+ S   Q +     
Sbjct: 494 NETFVVTKNGKMYALIFVVQAERDTLKWQIIKENRQKMYNITNNVDKISAGYQTLILKKD 553

Query: 236 EKAQKLVSEGMEKEKYMPIIWEPFLVEGV--EVVDIACGFDHSLVLGRNGVLLSCGSN-V 292
                L  +   K  +  I  E +++E V   VV +A G+DH L + ++G L + GS+  
Sbjct: 554 GTLYALKGKTSWKGSHTQI--ESYVIEKVLNNVVSMASGYDHCLAVTKDGSLYAWGSDPA 611

Query: 293 YGQLGREKQDMGMF---PVDINFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNR 349
           +G++G       +    PV +  +   +++G   S A+ +            + +WG+N 
Sbjct: 612 HGEIGNGIAIPNLRIDKPVKVMDNVKMVAAGANRSFALTKNGE---------VYAWGFN- 661

Query: 350 SSQLGRMGPD 359
              LG +G D
Sbjct: 662 ---LGTLGTD 668


>gi|194767960|ref|XP_001966082.1| GF19414 [Drosophila ananassae]
 gi|190622967|gb|EDV38491.1| GF19414 [Drosophila ananassae]
          Length = 5087

 Score = 98.6 bits (244), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 89/285 (31%), Positives = 130/285 (45%), Gaps = 57/285 (20%)

Query: 19   IFMRSASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVT---SVSAGHYH 75
            +F+ S  G  V + G+G+ G LGL     GV  +   P ++P L   V    +V +G  H
Sbjct: 3119 LFIVSQEGR-VFACGEGTNGRLGL-----GVTYNVPLPHQLPVLHQYVVKKVAVHSGGKH 3172

Query: 76   SLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIG 135
            +LA+T +G V++WG   + +LG G   +R T + P++VE L    +         S+AI 
Sbjct: 3173 ALALTLDGKVFSWGEGEDGKLGHG---NRTTLDKPRQVEALRAKKIRDVACGSSHSAAIS 3229

Query: 136  DDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGW--GHALAQTEDGKL 193
              G L+ WG  + G+LG G + T+ + P  V ALAG ++V+V+ G      LA TEDG +
Sbjct: 3230 SQGELYTWGLGEYGRLGHGDNATQ-LKPKLVAALAGRRVVQVACGSRDAQTLALTEDGAV 3288

Query: 194  FGWGYSADGRIGNLGK-ALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYM 252
            F WG   DG  G LG+   E S     I+R S                            
Sbjct: 3289 FSWG---DGDFGKLGRGGSEGSDTPHEIERLS---------------------------- 3317

Query: 253  PIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLG 297
                      G+ V+ I CG   SL L R G + + G   Y +LG
Sbjct: 3318 ----------GIGVIQIECGAQFSLALTRAGEVWTWGKGDYYRLG 3352



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 83/315 (26%), Positives = 137/315 (43%), Gaps = 67/315 (21%)

Query: 68   SVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFAS 127
            +V++G  H LA+T  G V+AWG   + +LG G   +R +++ PK VE L  ++V      
Sbjct: 4315 AVNSGGKHCLALTTEGEVYAWGEGEDGKLGHG---NRVSYDRPKLVEHLHGMSVADIACG 4371

Query: 128  GVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHA--L 185
               S+AI   G +  WGK + G+LG G D  + + P  VEAL G + + ++ G G A  L
Sbjct: 4372 SAHSAAITASGQVLTWGKGRYGRLGHG-DSEDQLRPKLVEALLGYRAIDIACGSGDAQTL 4430

Query: 186  AQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEG 245
              T+D  ++ WG   DG  G LG+                                 S+G
Sbjct: 4431 CITDDDNVWSWG---DGDYGKLGRG-------------------------------GSDG 4456

Query: 246  MEKEKYMPIIWEPFLVE---GVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQD 302
             +          P+ +E   G+ V+ + CG   S+ L ++G + + G   + +LG    D
Sbjct: 4457 CKL---------PYKIESLAGLGVIKVECGSQFSVALTKSGAVYTWGKGDFHRLGHGSVD 4507

Query: 303  MGMFPVDINF----HPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQL--GRM 356
                P  +        +SI++G  H +A  +         +  + +WG N   QL  G +
Sbjct: 4508 HVRRPKKVAALQGKKIISIATGSLHCVACSD---------SGEVYTWGDNDEGQLGDGTV 4558

Query: 357  GPDNVPLVVEGLEGE 371
                 P +V  L+G+
Sbjct: 4559 TAIQRPRLVSALQGK 4573



 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 75/245 (30%), Positives = 114/245 (46%), Gaps = 25/245 (10%)

Query: 71  AGHY---HSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFAS 127
           AGH    H +A+ +N   ++WG   + +LG G   +RA    P ++  L+Q  V + F  
Sbjct: 635 AGHCEGRHFMAIDSNHNAYSWGAGEDHRLGHGDTHARAV---PTKIAALEQHCVQSVFCG 691

Query: 128 GVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWG--HAL 185
              S+ I   G+L  WG+    +LG G    +  +P+ V ALA   +V V+ G G  H+L
Sbjct: 692 CTYSAVITCGGNLLTWGRGTYARLGHGNS-DDRCLPTLVAALAEHTVVDVALGSGDAHSL 750

Query: 186 AQTEDGKLFGWGYSADGRIGN------LGKAL-ESSPLDSNIDRSSESDQEISSS----T 234
           A T +G +F WG    G++GN      L   L ES P    I   S+    +SS     T
Sbjct: 751 ALTSEGLVFAWGDGDYGKLGNGNCNGSLQPILVESLPRVQRIFAGSQYSVALSSEGQVYT 810

Query: 235 IEKAQKLVSEGMEKEKYMPIIWEPFLVEGVE---VVDIACGFDHSLVLGRNGVLLSCGSN 291
             KA  L  + +E+      +  P LV  ++   +VD+A G  H L L  +G +   G N
Sbjct: 811 WGKATCLGHQLVERSVQGCSV--PRLVSSLQHKRIVDMAVGVAHCLALSSSGEVFGWGRN 868

Query: 292 VYGQL 296
              Q+
Sbjct: 869 DCQQV 873



 Score = 70.5 bits (171), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 54/188 (28%), Positives = 94/188 (50%), Gaps = 15/188 (7%)

Query: 23   SASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGL----PSDVTSVSAGHYHSLA 78
            +ASG  V+++G G  G LG      G   D   P  V  L      D+ +  +G   +L 
Sbjct: 4379 TASGQ-VLTWGKGRYGRLG-----HGDSEDQLRPKLVEALLGYRAIDI-ACGSGDAQTLC 4431

Query: 79   VTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDG 138
            +T++  VW+WG  +  +LGRG  +       P ++E L  + V         S A+   G
Sbjct: 4432 ITDDDNVWSWGDGDYGKLGRGGSDG---CKLPYKIESLAGLGVIKVECGSQFSVALTKSG 4488

Query: 139  SLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGY 198
            +++ WGK    +LG G  +     P +V AL G+KI+ ++ G  H +A ++ G+++ WG 
Sbjct: 4489 AVYTWGKGDFHRLGHG-SVDHVRRPKKVAALQGKKIISIATGSLHCVACSDSGEVYTWGD 4547

Query: 199  SADGRIGN 206
            + +G++G+
Sbjct: 4548 NDEGQLGD 4555



 Score = 68.9 bits (167), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 43/133 (32%), Positives = 73/133 (54%), Gaps = 6/133 (4%)

Query: 75   HSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNV-CAAFASGVVSSA 133
             +LA+T +GAV++WG  +  +LGRG  E   T ++ +R+ G+  + + C A  S  ++ A
Sbjct: 3278 QTLALTEDGAVFSWGDGDFGKLGRGGSEGSDTPHEIERLSGIGVIQIECGAQFSLALTRA 3337

Query: 134  IGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKL 193
                G +W WGK    +LG G D      P  +  L G +++ V+ G  H LA T+ G++
Sbjct: 3338 ----GEVWTWGKGDYYRLGHGGD-QHVRKPQPIGGLRGRRVIHVAVGALHCLAVTDSGQV 3392

Query: 194  FGWGYSADGRIGN 206
            + WG +  G+ G+
Sbjct: 3393 YAWGDNDHGQQGS 3405



 Score = 68.9 bits (167), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 52/157 (33%), Positives = 75/157 (47%), Gaps = 10/157 (6%)

Query: 31   SFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPS-DVTSVSAGHYHSLAVTNNGAVWAWG 89
            S+GDG  G LG      G       P ++  L    V  V  G   S+A+T +GAV+ WG
Sbjct: 4440 SWGDGDYGKLG-----RGGSDGCKLPYKIESLAGLGVIKVECGSQFSVALTKSGAVYTWG 4494

Query: 90   RNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRG 149
            + +  +LG G+++       PK+V  L    + +     +   A  D G ++ WG +  G
Sbjct: 4495 KGDFHRLGHGSVDH---VRRPKKVAALQGKKIISIATGSLHCVACSDSGEVYTWGDNDEG 4551

Query: 150  QLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALA 186
            QLG G  +T    P  V AL G+ IVKV+ G  H LA
Sbjct: 4552 QLGDGT-VTAIQRPRLVSALQGKHIVKVTCGSAHTLA 4587



 Score = 67.8 bits (164), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 54/176 (30%), Positives = 84/176 (47%), Gaps = 14/176 (7%)

Query: 26  GTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVT---SVSAGHYHSLAVTNN 82
           G  ++++G G+   LG      G   D   PT V  L        ++ +G  HSLA+T+ 
Sbjct: 701 GGNLLTWGRGTYARLG-----HGNSDDRCLPTLVAALAEHTVVDVALGSGDAHSLALTSE 755

Query: 83  GAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWV 142
           G V+AWG  +  +LG G          P  VE L +V     FA    S A+  +G ++ 
Sbjct: 756 GLVFAWGDGDYGKLGNGNCNGSL---QPILVESLPRVQ--RIFAGSQYSVALSSEGQVYT 810

Query: 143 WGKSK-RGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWG 197
           WGK+   G   + + +    VP  V +L  ++IV ++ G  H LA +  G++FGWG
Sbjct: 811 WGKATCLGHQLVERSVQGCSVPRLVSSLQHKRIVDMAVGVAHCLALSSSGEVFGWG 866



 Score = 64.3 bits (155), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 83/310 (26%), Positives = 126/310 (40%), Gaps = 59/310 (19%)

Query: 69   VSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDP--KRVEGLDQ--VNVCAA 124
            ++ G      V+  G V+A G     +LG G      T+N P   ++  L Q  V   A 
Sbjct: 3112 IAGGSKSLFIVSQEGRVFACGEGTNGRLGLGV-----TYNVPLPHQLPVLHQYVVKKVAV 3166

Query: 125  FASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHA 184
             + G  + A+  DG ++ WG+ + G+LG G   T    P +VEAL  +KI  V+ G  H+
Sbjct: 3167 HSGGKHALALTLDGKVFSWGEGEDGKLGHGNRTT-LDKPRQVEALRAKKIRDVACGSSHS 3225

Query: 185  LAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSE 244
             A +  G+L+ WG    GR+G+   A +  P                        KLV+ 
Sbjct: 3226 AAISSQGELYTWGLGEYGRLGHGDNATQLKP------------------------KLVAA 3261

Query: 245  GMEKEKYMPIIWEPFLVEGVEVVDIACGFD--HSLVLGRNGVLLSCGSNVYGQLGREKQD 302
                            + G  VV +ACG     +L L  +G + S G   +G+LGR   +
Sbjct: 3262 ----------------LAGRRVVQVACGSRDAQTLALTEDGAVFSWGDGDFGKLGRGGSE 3305

Query: 303  MGMFPVDINFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPDNV- 361
                P     H +   SG+G     C  + S     A  + +WG     +LG  G  +V 
Sbjct: 3306 GSDTP-----HEIERLSGIGVIQIECGAQFSLALTRAGEVWTWGKGDYYRLGHGGDQHVR 3360

Query: 362  -PLVVEGLEG 370
             P  + GL G
Sbjct: 3361 KPQPIGGLRG 3370



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 77/294 (26%), Positives = 117/294 (39%), Gaps = 59/294 (20%)

Query: 85   VWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWG 144
            ++ WG N+  QLG G   SR     P   E L  +             A+  DG L+  G
Sbjct: 4226 IYGWGHNHRGQLG-GLEGSRI--KTPTPCEALSLLRPVQLAGGEQSLFAVTPDGKLFATG 4282

Query: 145  KSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWG--HALAQTEDGKLFGWGYSADG 202
                G+LG+G   + AI P+ + +L    + KV+   G  H LA T +G+++ WG   DG
Sbjct: 4283 YGSGGRLGVGGSDSWAI-PTLLGSLQHVFVKKVAVNSGGKHCLALTTEGEVYAWGEGEDG 4341

Query: 203  RIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVE 262
            ++G+  +     P                        KLV                  + 
Sbjct: 4342 KLGHGNRVSYDRP------------------------KLVEH----------------LH 4361

Query: 263  GVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDIN----FHPVSIS 318
            G+ V DIACG  HS  +  +G +L+ G   YG+LG    +  + P  +     +  + I+
Sbjct: 4362 GMSVADIACGSAHSAAITASGQVLTWGKGRYGRLGHGDSEDQLRPKLVEALLGYRAIDIA 4421

Query: 319  SGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPD--NVPLVVEGLEG 370
             G G +  +C     NV        SWG     +LGR G D   +P  +E L G
Sbjct: 4422 CGSGDAQTLCITDDDNVW-------SWGDGDYGKLGRGGSDGCKLPYKIESLAG 4468



 Score = 55.1 bits (131), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 79/309 (25%), Positives = 123/309 (39%), Gaps = 55/309 (17%)

Query: 69   VSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNV--CAAFA 126
            ++ G     AVT +G ++A G  +  +LG G  +S   W  P  +  L  V V   A  +
Sbjct: 4262 LAGGEQSLFAVTPDGKLFATGYGSGGRLGVGGSDS---WAIPTLLGSLQHVFVKKVAVNS 4318

Query: 127  SGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALA 186
             G    A+  +G ++ WG+ + G+LG G  ++    P  VE L G  +  ++ G  H+ A
Sbjct: 4319 GGKHCLALTTEGEVYAWGEGEDGKLGHGNRVSYD-RPKLVEHLHGMSVADIACGSAHSAA 4377

Query: 187  QTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGM 246
             T  G++  WG    GR G LG                                    G 
Sbjct: 4378 ITASGQVLTWG---KGRYGRLG-----------------------------------HGD 4399

Query: 247  EKEKYMPIIWEPFLVEGVEVVDIACGF--DHSLVLGRNGVLLSCGSNVYGQLGREKQDMG 304
             +++  P + E  L  G   +DIACG     +L +  +  + S G   YG+LGR   D  
Sbjct: 4400 SEDQLRPKLVEALL--GYRAIDIACGSGDAQTLCITDDDNVWSWGDGDYGKLGRGGSDGC 4457

Query: 305  MFPVDINFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPDNV--P 362
              P  I        +GLG     C  + S     +  + +WG     +LG    D+V  P
Sbjct: 4458 KLPYKIES-----LAGLGVIKVECGSQFSVALTKSGAVYTWGKGDFHRLGHGSVDHVRRP 4512

Query: 363  LVVEGLEGE 371
              V  L+G+
Sbjct: 4513 KKVAALQGK 4521



 Score = 40.4 bits (93), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 24/64 (37%), Positives = 36/64 (56%), Gaps = 1/64 (1%)

Query: 135  GDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLF 194
            G   +++ WG + RGQLG G + +    P+  EAL+  + V+++ G     A T DGKLF
Sbjct: 4221 GGASTIYGWGHNHRGQLG-GLEGSRIKTPTPCEALSLLRPVQLAGGEQSLFAVTPDGKLF 4279

Query: 195  GWGY 198
              GY
Sbjct: 4280 ATGY 4283



 Score = 40.4 bits (93), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 38/112 (33%), Positives = 51/112 (45%), Gaps = 18/112 (16%)

Query: 25   SGTAVVSFGDGSQGALGLPTS------------LTGVGGDAY--EPTRVPGLP-SDVTSV 69
            SG  V+    G+Q +L L  +              G GGD +  +P  + GL    V  V
Sbjct: 3317 SGIGVIQIECGAQFSLALTRAGEVWTWGKGDYYRLGHGGDQHVRKPQPIGGLRGRRVIHV 3376

Query: 70   SAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNV 121
            + G  H LAVT++G V+AWG N+  Q G G   +      P  V GLD V V
Sbjct: 3377 AVGALHCLAVTDSGQVYAWGDNDHGQQGSG---NTFVNKKPALVIGLDDVFV 3425


>gi|380018521|ref|XP_003693176.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC4-like [Apis
           florea]
          Length = 1081

 Score = 98.6 bits (244), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 90/320 (28%), Positives = 143/320 (44%), Gaps = 65/320 (20%)

Query: 59  VPGLPSDVTSVSA-GHYHSLAVTNNGAVWAWGRNNEVQLG---RGALESRATWNDPKRVE 114
           +PGL + V   +A G YH+LA+   G +++WG N E QLG   +  +ES      P+ V+
Sbjct: 105 IPGLDAFVFKKAACGAYHTLAINEWGQLFSWGSNTEGQLGLNSKNFMES-----SPRMVK 159

Query: 115 GLDQVNVCAAFASGVVSS-AIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEK 173
            L   +V    A G+  + A+ ++G L+ WG +  GQLGLG DI   I P  + A  G  
Sbjct: 160 TLG-TSVVVQIACGMKHAFALTNNGELYSWGSNSEGQLGLGTDIKYEIKPKFISAFIGIP 218

Query: 174 IVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSS 233
           I  ++ G  H++A ++ G +FGWG +  G++G          L+   DR+     +    
Sbjct: 219 IAFIACGGYHSIAISKSGAVFGWGKNTFGQLG----------LNDTQDRNLPCQLQ---- 264

Query: 234 TIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVY 293
           T++ A+                          +   ACG + S+ L  +G + +CG+ +Y
Sbjct: 265 TLQNAK--------------------------ICYAACGEEFSVFLTVDGGVFTCGAGMY 298

Query: 294 GQLGREKQDMGMFPVDI----NFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNR 349
           GQLG       + P  +          IS G  H+LA+   R          + +WG   
Sbjct: 299 GQLGHGSNSNEILPRQVMELMGSTVTQISCGKRHTLALVPSRGR--------VYAWGLGG 350

Query: 350 SSQLGRMGPDNV--PLVVEG 367
           + QLG     +V  P VV G
Sbjct: 351 AGQLGNHSTRSVTTPQVVHG 370



 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 56/179 (31%), Positives = 91/179 (50%), Gaps = 8/179 (4%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAW 88
           + S+G  S+G LGL T +       +    + G+P  +  ++ G YHS+A++ +GAV+ W
Sbjct: 185 LYSWGSNSEGQLGLGTDIKYEIKPKFISAFI-GIP--IAFIACGGYHSIAISKSGAVFGW 241

Query: 89  GRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKR 148
           G+N   QLG    + R   N P +++ L    +C A      S  +  DG ++  G    
Sbjct: 242 GKNTFGQLGLNDTQDR---NLPCQLQTLQNAKICYAACGEEFSVFLTVDGGVFTCGAGMY 298

Query: 149 GQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTED-GKLFGWGYSADGRIGN 206
           GQLG G +  E I+P +V  L G  + ++S G  H LA     G+++ WG    G++GN
Sbjct: 299 GQLGHGSNSNE-ILPRQVMELMGSTVTQISCGKRHTLALVPSRGRVYAWGLGGAGQLGN 356



 Score = 79.0 bits (193), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 67/265 (25%), Positives = 117/265 (44%), Gaps = 52/265 (19%)

Query: 48  GVGGDAYEPTRVP-----GLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALE 102
           G+GG   E   +P        +++  ++ G  +++ +T  G +++ G N+  QLG     
Sbjct: 40  GLGGIEDENILIPRELDFKKAAEIQQIACGENYTVVITQIGEIYSCGNNDYGQLGHEKGR 99

Query: 103 SRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLG-KDITEAI 161
            R      + + GLD      A      + AI + G L+ WG +  GQLGL  K+  E+ 
Sbjct: 100 KRL-----QLIPGLDAFVFKKAACGAYHTLAINEWGQLFSWGSNTEGQLGLNSKNFMES- 153

Query: 162 VPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNID 221
            P  V+ L    +V+++ G  HA A T +G+L+ WG +++G++G LG  ++         
Sbjct: 154 SPRMVKTLGTSVVVQIACGMKHAFALTNNGELYSWGSNSEGQLG-LGTDIKY-------- 204

Query: 222 RSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGR 281
                         E   K +S  +                G+ +  IACG  HS+ + +
Sbjct: 205 --------------EIKPKFISAFI----------------GIPIAFIACGGYHSIAISK 234

Query: 282 NGVLLSCGSNVYGQLG-REKQDMGM 305
           +G +   G N +GQLG  + QD  +
Sbjct: 235 SGAVFGWGKNTFGQLGLNDTQDRNL 259



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 72/286 (25%), Positives = 122/286 (42%), Gaps = 39/286 (13%)

Query: 105 ATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAI-VP 163
           A WN  +R+         A+     V   +     ++ WG +  G+LGLG    E I +P
Sbjct: 2   ANWNKKRRL---------ASEPVIAVEYPLHKKKDMFCWGSTIHGELGLGGIEDENILIP 52

Query: 164 SRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLG--KALESSP-LDSNI 220
             ++     +I +++ G  + +  T+ G+++  G +  G++G+    K L+  P LD+ +
Sbjct: 53  RELDFKKAAEIQQIACGENYTVVITQIGEIYSCGNNDYGQLGHEKGRKRLQLIPGLDAFV 112

Query: 221 DRSSESDQEISSSTIEKAQKLV-------SEGMEKEKYMPIIWEPFLVEGV---EVVDIA 270
            + +      + +  E  Q            G+  + +M     P +V+ +    VV IA
Sbjct: 113 FKKAACGAYHTLAINEWGQLFSWGSNTEGQLGLNSKNFME--SSPRMVKTLGTSVVVQIA 170

Query: 271 CGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFH--PVSISSGLGHSLAI- 327
           CG  H+  L  NG L S GSN  GQLG     +G    DI +   P  IS+ +G  +A  
Sbjct: 171 CGMKHAFALTNNGELYSWGSNSEGQLG-----LG---TDIKYEIKPKFISAFIGIPIAFI 222

Query: 328 -CEVRSSNVTGGARGIVSWGWNRSSQLGRMGPD--NVPLVVEGLEG 370
            C    S     +  +  WG N   QLG       N+P  ++ L+ 
Sbjct: 223 ACGGYHSIAISKSGAVFGWGKNTFGQLGLNDTQDRNLPCQLQTLQN 268


>gi|403331454|gb|EJY64675.1| putative protein similar to vertebrate hect domain and RLD 3 (HERC3)
            [Oxytricha trifallax]
          Length = 2049

 Score = 98.2 bits (243), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 87/317 (27%), Positives = 138/317 (43%), Gaps = 67/317 (21%)

Query: 69   VSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASG 128
            +SAG+ HS+A+T +  ++ WG       G G L+ +   N P +++  ++  +  A   G
Sbjct: 1675 LSAGYEHSIAITKSNELYIWGSGG--LCGIGTLKQQ---NAPVKIDFFNKSKILTAVCGG 1729

Query: 129  VVSSAIGDDGSLWVWGKSKRGQLGLGK-----------DITEAIVPSRVEALAGEKIVKV 177
            + + A+  D   + WG ++ GQLGL +           D  + + P R+  L G +I +V
Sbjct: 1730 LHTVAVTKDWEAYSWGLTEGGQLGLPQSTIVKLCQGQGDEPQVLTPQRIPKLEGLQIAQV 1789

Query: 178  SFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEK 237
            + G  H++A T+DG ++GWG S  G++G LG                      S  + E 
Sbjct: 1790 ACGEAHSIAMTKDGTIYGWGQSNYGQLG-LG---------------------FSGDSFEP 1827

Query: 238  AQKLVSEGMEKEKYMPIIWEPFLVEGV---EVVDIACGFDHSLVLGRNGVLLSCGSNVYG 294
                   GMEK K    ++EP  + G+   ++  I CG   +L     G L  CG N  G
Sbjct: 1828 GL-----GMEKSK----VYEPQEINGLKHEKISKIICGATFTLFQTDKGDLYGCGVNDLG 1878

Query: 295  QLG-----REKQDMGMFPVDINFH--------PVSISSGLG---HSLAICEVRSSNVTG- 337
            QLG      E Q   +  V    H        P  +    G   H +A  E  S  V+G 
Sbjct: 1879 QLGLDTFMEEMQIASLEKVKKGKHNQTSDVILPTRVICFQGIAIHQIACGESHSLAVSGD 1938

Query: 338  GARGIVSWGWNRSSQLG 354
            G   + +WG  ++ QLG
Sbjct: 1939 GMNMLWAWGMFKNGQLG 1955



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 75/296 (25%), Positives = 127/296 (42%), Gaps = 58/296 (19%)

Query: 64   SDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLG----------RGALESRATWNDPKRV 113
            S + +   G  H++AVT +   ++WG     QLG          +G  +       P+R+
Sbjct: 1720 SKILTAVCGGLHTVAVTKDWEAYSWGLTEGGQLGLPQSTIVKLCQGQGDEPQVLT-PQRI 1778

Query: 114  EGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQL-----------GLGKDITEAIV 162
              L+ + +         S A+  DG+++ WG+S  GQL           GLG + ++   
Sbjct: 1779 PKLEGLQIAQVACGEAHSIAMTKDGTIYGWGQSNYGQLGLGFSGDSFEPGLGMEKSKVYE 1838

Query: 163  PSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDR 222
            P  +  L  EKI K+  G    L QT+ G L+G G +  G++G          LD+ +  
Sbjct: 1839 PQEINGLKHEKISKIICGATFTLFQTDKGDLYGCGVNDLGQLG----------LDTFM-- 1886

Query: 223  SSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRN 282
                 +E+  +++EK +K        +  +P        +G+ +  IACG  HSL +  +
Sbjct: 1887 -----EEMQIASLEKVKK-GKHNQTSDVILPT--RVICFQGIAIHQIACGESHSLAVSGD 1938

Query: 283  G--VLLSCGSNVYGQLGREKQDMGMFPVDINFHPVS---------ISSGLGHSLAI 327
            G  +L + G    GQLG     +G   + +N  PV          I+ G  HS+A+
Sbjct: 1939 GMNMLWAWGMFKNGQLG-----LGEVTMKLNPRPVQSLCSSQIQRIACGSMHSVAL 1989



 Score = 75.5 bits (184), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 61/214 (28%), Positives = 95/214 (44%), Gaps = 40/214 (18%)

Query: 31   SFGDGSQGALGLPTS----LTGVGGDAYE---PTRVPGLPS-DVTSVSAGHYHSLAVTNN 82
            S+G    G LGLP S    L    GD  +   P R+P L    +  V+ G  HS+A+T +
Sbjct: 1743 SWGLTEGGQLGLPQSTIVKLCQGQGDEPQVLTPQRIPKLEGLQIAQVACGEAHSIAMTKD 1802

Query: 83   GAVWAWGRNNEVQLGRG----------ALESRATWNDPKRVEGLDQVNVCAAFASGVVSS 132
            G ++ WG++N  QLG G           +E    + +P+ + GL    +         + 
Sbjct: 1803 GTIYGWGQSNYGQLGLGFSGDSFEPGLGMEKSKVY-EPQEINGLKHEKISKIICGATFTL 1861

Query: 133  AIGDDGSLWVWGKSKRGQLGL-----------------GK--DITEAIVPSRVEALAGEK 173
               D G L+  G +  GQLGL                 GK    ++ I+P+RV    G  
Sbjct: 1862 FQTDKGDLYGCGVNDLGQLGLDTFMEEMQIASLEKVKKGKHNQTSDVILPTRVICFQGIA 1921

Query: 174  IVKVSFGWGHALAQTEDG--KLFGWGYSADGRIG 205
            I +++ G  H+LA + DG   L+ WG   +G++G
Sbjct: 1922 IHQIACGESHSLAVSGDGMNMLWAWGMFKNGQLG 1955



 Score = 69.7 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 54/232 (23%), Positives = 96/232 (41%), Gaps = 49/232 (21%)

Query: 66   VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAF 125
            +  V  G+ H++ +  +G V+ WG N   QLG G        N P+ +         A +
Sbjct: 1635 IREVCCGNSHTMVINMSGQVFVWGANQTGQLGLGD-------NSPQILS--------AGY 1679

Query: 126  ASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHAL 185
               +   AI     L++WG    G  G+G  + +   P +++     KI+    G  H +
Sbjct: 1680 EHSI---AITKSNELYIWGSG--GLCGIGT-LKQQNAPVKIDFFNKSKILTAVCGGLHTV 1733

Query: 186  AQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEG 245
            A T+D + + WG +  G++G     L  S +        +  Q ++   I K        
Sbjct: 1734 AVTKDWEAYSWGLTEGGQLG-----LPQSTIVKLCQGQGDEPQVLTPQRIPK-------- 1780

Query: 246  MEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLG 297
                           +EG+++  +ACG  HS+ + ++G +   G + YGQLG
Sbjct: 1781 ---------------LEGLQIAQVACGEAHSIAMTKDGTIYGWGQSNYGQLG 1817



 Score = 52.8 bits (125), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 47/178 (26%), Positives = 75/178 (42%), Gaps = 27/178 (15%)

Query: 33   GDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSD-VTSVSAGHYHSLAVTNNGAVWAWGRN 91
            GD  +  LG+  S        YEP  + GL  + ++ +  G   +L  T+ G ++  G N
Sbjct: 1822 GDSFEPGLGMEKS------KVYEPQEINGLKHEKISKIICGATFTLFQTDKGDLYGCGVN 1875

Query: 92   NEVQLG-----------------RGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAI 134
            +  QLG                 +G     +    P RV     + +         S A+
Sbjct: 1876 DLGQLGLDTFMEEMQIASLEKVKKGKHNQTSDVILPTRVICFQGIAIHQIACGESHSLAV 1935

Query: 135  GDDGS--LWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTED 190
              DG   LW WG  K GQLGLG ++T  + P  V++L   +I +++ G  H++A   D
Sbjct: 1936 SGDGMNMLWAWGMFKNGQLGLG-EVTMKLNPRPVQSLCSSQIQRIACGSMHSVALIGD 1992


>gi|222616116|gb|EEE52248.1| hypothetical protein OsJ_34191 [Oryza sativa Japonica Group]
          Length = 425

 Score = 98.2 bits (243), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 104/348 (29%), Positives = 164/348 (47%), Gaps = 50/348 (14%)

Query: 32  FGDGSQGALGLPTSLTGVGGDAYEPTRVP----GLP-----SDVTSVSAGHYHSLAVTNN 82
           +G+G  G LG+     G     + PT  P    G P         S++ G  H+L +T +
Sbjct: 37  WGNGDYGRLGM-----GALESRWSPTACPFFLTGRPGDDDDDPPASLACGGAHTLFLTES 91

Query: 83  GAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWV 142
           G V+A G N+  QLG G+  + +   +P  V G D+  V    A    S A+  DG L+ 
Sbjct: 92  GRVFAAGLNDFGQLGIGSSVTHSL--EPIEVSGFDE-KVVEVSAGNHHSCAVTADGKLFA 148

Query: 143 WGKSKRGQLGLGKDITEAI-VPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSAD 201
           WG++  GQLGLGK   + +  P +V+ LA  ++  V+ G  H++A TE+G++  WG +  
Sbjct: 149 WGRNSSGQLGLGKRAGKVVSTPRKVDCLADARVKMVALGSEHSIATTEEGEVLSWGAAGA 208

Query: 202 GRIGN------LGKALESSPLDSNIDRSSESDQ-------EISSSTIEKAQKLVSEGMEK 248
           GR+G+      LG ++ +S     + ++ +  +        + S+ I++   L   G + 
Sbjct: 209 GRLGHGHKTSILGFSITTSEYTPRLIKNLDGVKIKRIAAGMLHSACIDEKGTLFIFGQKT 268

Query: 249 EKYMPIIWE---PFLVEGVEVVD-IACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMG 304
           EK      +   P +VE V   + +ACG  H+ V+  +G L S GSN  G LG    DM 
Sbjct: 269 EKGFGRSGDELRPTVVEEVPFSEEVACGGYHTCVVTDSGDLYSWGSNENGCLGLGGTDMV 328

Query: 305 MFP----VDINFHPVS-ISSGLGHSLAICEVRSSNVTGGARGIVSWGW 347
             P      +   PVS +S G  H+  I        +GG   I +WGW
Sbjct: 329 RSPEVLKSSLFKFPVSKVSCGWKHTAVI--------SGGD--IYTWGW 366



 Score = 88.6 bits (218), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 87/326 (26%), Positives = 138/326 (42%), Gaps = 41/326 (12%)

Query: 38  GALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLG 97
           G LG+ +S+T     + EP  V G    V  VSAG++HS AVT +G ++AWGRN+  QLG
Sbjct: 103 GQLGIGSSVT----HSLEPIEVSGFDEKVVEVSAGNHHSCAVTADGKLFAWGRNSSGQLG 158

Query: 98  RGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKD- 156
            G    +   + P++V+ L    V         S A  ++G +  WG +  G+LG G   
Sbjct: 159 LGKRAGKVV-STPRKVDCLADARVKMVALGSEHSIATTEEGEVLSWGAAGAGRLGHGHKT 217

Query: 157 -------ITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGK 209
                   T    P  ++ L G KI +++ G  H+    E G LF +G   +   G  G 
Sbjct: 218 SILGFSITTSEYTPRLIKNLDGVKIKRIAAGMLHSACIDEKGTLFIFGQKTEKGFGRSGD 277

Query: 210 ALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYM----------PIIWEPF 259
            L  + ++        +     +  +  +  L S G  +   +          P + +  
Sbjct: 278 ELRPTVVEEVPFSEEVACGGYHTCVVTDSGDLYSWGSNENGCLGLGGTDMVRSPEVLKSS 337

Query: 260 LVEGVEVVDIACGFDHSLVL-----------GRNGVLLSCGSNVYGQLGREKQDMGMF-P 307
           L +   V  ++CG+ H+ V+           G NG     G +  GQLG    D+  F P
Sbjct: 338 LFK-FPVSKVSCGWKHTAVISGGDIYTWGWGGANGTFFEEGHSSGGQLG-HGNDVDYFEP 395

Query: 308 VDINF----HPVSISSGLGHSLAICE 329
           + + F      V +S G  H+ AI E
Sbjct: 396 MMVEFGKNARAVHVSCGFNHTGAIFE 421


>gi|148672794|gb|EDL04741.1| mCG16651 [Mus musculus]
          Length = 462

 Score = 98.2 bits (243), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 75/262 (28%), Positives = 133/262 (50%), Gaps = 25/262 (9%)

Query: 55  EPTRVPGLPS--DVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKR 112
           +P R+    S  ++   ++G +HSL + +N  V++ G N+  QLG+   +S      P+ 
Sbjct: 11  KPRRLKAGTSGIELLQAASGEHHSLLLFSNHRVYSCGDNSWGQLGQRRDQST---ERPEP 67

Query: 113 VEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGE 172
           ++ L+ ++V         S A+   G ++ WG    GQLG+G+    + +P++++ALAG 
Sbjct: 68  IQALNDLHVDLVSCGKEHSVAVCHKGKVFAWGAGSEGQLGIGEFKEISFMPTKIKALAGI 127

Query: 173 KIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSES---DQE 229
           KI++VS G  H+LA +EDG +F WG +++G++G LGK   S  +   + +S E     Q 
Sbjct: 128 KIIQVSCGHYHSLALSEDGHVFSWGRNSEGQLG-LGKNSRSQAIPQKV-KSLEGIPLAQV 185

Query: 230 ISSSTIEKAQKLVSE------------GMEKEKYMPIIWEPFLV---EGVEVVDIACGFD 274
            +  T   A  L                +   K    I++P  +   + + V+ I+CG++
Sbjct: 186 AAGGTHSFALSLTGTSFGWGSNRSGQLALSGNKVKEQIYKPHSIGALKNLSVIYISCGYE 245

Query: 275 HSLVLGRNGVLLSCGSNVYGQL 296
           H+ VL   G + + G N  GQL
Sbjct: 246 HTAVLTEEGQVFTFGGNSSGQL 267



 Score = 55.1 bits (131), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 62/255 (24%), Positives = 106/255 (41%), Gaps = 55/255 (21%)

Query: 109 DPKRVE-GLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVE 167
            P+R++ G   + +  A +    S  +  +  ++  G +  GQLG  +D +    P  ++
Sbjct: 11  KPRRLKAGTSGIELLQAASGEHHSLLLFSNHRVYSCGDNSWGQLGQRRDQSTE-RPEPIQ 69

Query: 168 ALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESD 227
           AL    +  VS G  H++A    GK+F WG  ++G++G +G+  E S + + I       
Sbjct: 70  ALNDLHVDLVSCGKEHSVAVCHKGKVFAWGAGSEGQLG-IGEFKEISFMPTKIK------ 122

Query: 228 QEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLS 287
                                            + G++++ ++CG  HSL L  +G + S
Sbjct: 123 --------------------------------ALAGIKIIQVSCGHYHSLALSEDGHVFS 150

Query: 288 CGSNVYGQLGREKQDMGM-FPVDIN----FHPVSISSGLGHSLAICEVRSSNVTGGARGI 342
            G N  GQLG  K       P  +          +++G  HS A+      ++TG + G 
Sbjct: 151 WGRNSEGQLGLGKNSRSQAIPQKVKSLEGIPLAQVAAGGTHSFAL------SLTGTSFG- 203

Query: 343 VSWGWNRSSQLGRMG 357
             WG NRS QL   G
Sbjct: 204 --WGSNRSGQLALSG 216


>gi|307106099|gb|EFN54346.1| hypothetical protein CHLNCDRAFT_24715 [Chlorella variabilis]
          Length = 393

 Score = 98.2 bits (243), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 101/355 (28%), Positives = 164/355 (46%), Gaps = 60/355 (16%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVP-------GLPSDVTSVSAGHYHSLAVTN 81
           + +FG+G  G LG            Y    +P       G+P  + +V+ G  H+ AV +
Sbjct: 5   LATFGNGDCGRLGHSLE--------YASEELPRVVRALLGVP--LKAVACGGAHTAAVDD 54

Query: 82  NGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSS-AIGDDGSL 140
           +G V+ WG N++ QLG  + +S      P  V   ++V    A ++G   +  +G+ GS+
Sbjct: 55  SGTVYTWGLNDKGQLGHDSEDSEV--GLPGEVAMPERV---VALSAGYYHTLCVGESGSV 109

Query: 141 WVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSA 200
           W +G + +GQLGLGKD+     P  V++L   K+V V+ G  H+LA T  G+++ WG +A
Sbjct: 110 WSFGCNGKGQLGLGKDVVLVREPRLVKSLQDNKVVAVAAGMEHSLALTAGGEVYSWGNAA 169

Query: 201 DGRIGN--------LGKALESSPLDSNIDRSSESDQ----EISSSTIEKAQKLVSEGMEK 248
           +GR+G+         G ++E  P       +   +Q    ++ S+ +  A      G  K
Sbjct: 170 NGRLGHGSATPRRLFGSSIEFLPRLVRAFEALRVEQVSAGQMHSAAVSTAGDAFLWGYGK 229

Query: 249 EKYM----------PIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGR 298
              +          P +  P  ++G     +ACG  HSL L   G +L+ G+N  G LG+
Sbjct: 230 FHQLGFGSDEDLAGPTVLPP--LKG-STAAVACGSLHSLALQYGGHVLAWGTNQNGVLGQ 286

Query: 299 --EKQDMGMFPVDI-NFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRS 350
             EKQ     P  +       I++G  HS A        VTG  + + +WGW  S
Sbjct: 287 GHEKQQQPKRPSKVPGVSAEQIAAGWKHSAA--------VTGSGK-LYTWGWGGS 332



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 67/231 (29%), Positives = 101/231 (43%), Gaps = 22/231 (9%)

Query: 2   RLLKSVVHNHVNVLTSRIFMRSA--SGTAVVSFGDGSQGALG----LPTSLTGVGGDAYE 55
           RL+KS+  N V  + + +    A  +G  V S+G+ + G LG     P  L G   + + 
Sbjct: 133 RLVKSLQDNKVVAVAAGMEHSLALTAGGEVYSWGNAANGRLGHGSATPRRLFGSSIE-FL 191

Query: 56  PTRVPGLPS-DVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVE 114
           P  V    +  V  VSAG  HS AV+  G  + WG     QLG G+ E  A       ++
Sbjct: 192 PRLVRAFEALRVEQVSAGQMHSAAVSTAGDAFLWGYGKFHQLGFGSDEDLAGPTVLPPLK 251

Query: 115 GLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKI 174
           G      C +  S     A+   G +  WG ++ G LG G +  +   P R   + G   
Sbjct: 252 GSTAAVACGSLHS----LALQYGGHVLAWGTNQNGVLGQGHEKQQQ--PKRPSKVPGVSA 305

Query: 175 VKVSFGWGHALAQTEDGKLFGWGY--------SADGRIGNLGKALESSPLD 217
            +++ GW H+ A T  GKL+ WG+        S +GR G  G+    +  D
Sbjct: 306 EQIAAGWKHSAAVTGSGKLYTWGWGGSQGTALSFEGRTGTGGQLGHGNDFD 356



 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 45/152 (29%), Positives = 63/152 (41%), Gaps = 19/152 (12%)

Query: 52  DAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPK 111
           D   PT +P L     +V+ G  HSLA+   G V AWG N    LG+G  E +     P 
Sbjct: 240 DLAGPTVLPPLKGSTAAVACGSLHSLALQYGGHVLAWGTNQNGVLGQGH-EKQQQPKRPS 298

Query: 112 RVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWG--------------KSKRGQLGLGKDI 157
           +V G+    + A +     S+A+   G L+ WG                  GQLG G D 
Sbjct: 299 KVPGVSAEQIAAGWKH---SAAVTGSGKLYTWGWGGSQGTALSFEGRTGTGGQLGHGNDF 355

Query: 158 TEAIVPSRVEALAGEKIVKVSFGWGHALAQTE 189
            +   P  V+ L+  +   V+ G  H  A  E
Sbjct: 356 -DYWSPHHVDWLSLTETDLVACGMNHTAAIVE 386


>gi|432095949|gb|ELK26864.1| Putative E3 ubiquitin-protein ligase HERC3 [Myotis davidii]
          Length = 1031

 Score = 98.2 bits (243), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 81/288 (28%), Positives = 131/288 (45%), Gaps = 23/288 (7%)

Query: 28  AVVSFGDGSQGALGLPTS-LTGVGGDAYEPTRVPGLPSD-VTSVSAGHYHSLAVTNNGAV 85
           +V    DG     GL T    G G +  +P ++  L    +  V+ G  HSLA+++ G +
Sbjct: 46  SVFLLEDGEVYTCGLNTKGQLGHGREGNKPEQIGALADQHIVHVACGESHSLALSDRGQL 105

Query: 86  WAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGK 145
           ++WG  ++ QLG    E       P+ ++ L+Q  +           A+  DG  + WGK
Sbjct: 106 FSWGAGSDGQLGLMTTEDSVAV--PRLIQKLNQQTILQVSCGNWHCLALAADGQFFTWGK 163

Query: 146 SKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIG 205
           +  GQLGLGKD      P RV +L G  + +V+ G  H+ A +  G +FGWG +  G++G
Sbjct: 164 NSHGQLGLGKDFPSQASPQRVRSLEGIPLAQVAAGGAHSFALSLSGAVFGWGMNNAGQLG 223

Query: 206 NLGKALESSPLDSNIDRSSE----SDQEISSSTIEKAQKLVSEG-----------MEKEK 250
              +    SP    + R+ +    S  E  ++ + K+  + + G           M  E 
Sbjct: 224 LSDEEDRESPCHVKLLRTQKVVYISCGEEHTAVLTKSGGVFTFGAGSCGQLGHDSMNDEV 283

Query: 251 YMPIIWEPFLVEGVEVVDIACGFDHSLVL-GRNGVLLSCGSNVYGQLG 297
               + E   + G EV  IACG  H+L     +G++ + G    GQLG
Sbjct: 284 NPRRVLE---LMGSEVTQIACGRQHTLAFVPSSGLIYAFGCGARGQLG 328



 Score = 85.5 bits (210), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 96/330 (29%), Positives = 148/330 (44%), Gaps = 39/330 (11%)

Query: 39  ALGLPTSLTGVGGDAYEPTRVPGLPSD--VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQL 96
           +LG P   T + G   EP +V G  SD  V  V+ G  HS+ +  +G V+  G N + QL
Sbjct: 8   SLGQPGISTNLQGIVAEP-QVCGFISDRSVKEVACGGNHSVFLLEDGEVYTCGLNTKGQL 66

Query: 97  GRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKD 156
           G G        N P+++  L   ++         S A+ D G L+ WG    GQLGL   
Sbjct: 67  GHG-----REGNKPEQIGALADQHIVHVACGESHSLALSDRGQLFSWGAGSDGQLGLMTT 121

Query: 157 ITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPL 216
                VP  ++ L  + I++VS G  H LA   DG+ F WG ++ G++G LGK   S   
Sbjct: 122 EDSVAVPRLIQKLNQQTILQVSCGNWHCLALAADGQFFTWGKNSHGQLG-LGKDFPSQAS 180

Query: 217 DSNIDRSSE-------SDQEISSSTIEKAQKLVSEGM----------EKEKYMPIIWEPF 259
              + RS E       +     S  +  +  +   GM          E+++  P   +  
Sbjct: 181 PQRV-RSLEGIPLAQVAAGGAHSFALSLSGAVFGWGMNNAGQLGLSDEEDRESPCHVK-- 237

Query: 260 LVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDI----NFHPV 315
           L+   +VV I+CG +H+ VL ++G + + G+   GQLG +  +  + P  +         
Sbjct: 238 LLRTQKVVYISCGEEHTAVLTKSGGVFTFGAGSCGQLGHDSMNDEVNPRRVLELMGSEVT 297

Query: 316 SISSGLGHSLAICEVRSSNVT----GGARG 341
            I+ G  H+LA   V SS +      GARG
Sbjct: 298 QIACGRQHTLAF--VPSSGLIYAFGCGARG 325



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 65/244 (26%), Positives = 103/244 (42%), Gaps = 70/244 (28%)

Query: 136 DDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFG 195
           +DG ++  G + +GQLG G+   E   P ++ ALA + IV V+ G  H+LA ++ G+LF 
Sbjct: 51  EDGEVYTCGLNTKGQLGHGR---EGNKPEQIGALADQHIVHVACGESHSLALSDRGQLFS 107

Query: 196 WGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPII 255
           WG  +DG++G +                     E S +     QKL  +           
Sbjct: 108 WGAGSDGQLGLM-------------------TTEDSVAVPRLIQKLNQQ----------- 137

Query: 256 WEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFHPV 315
                     ++ ++CG  H L L  +G   + G N +GQLG  K     FP   +   V
Sbjct: 138 ---------TILQVSCGNWHCLALAADGQFFTWGKNSHGQLGLGKD----FPSQASPQRV 184

Query: 316 ---------SISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLG------RMGPDN 360
                     +++G  HS A+      +++G   G   WG N + QLG      R  P +
Sbjct: 185 RSLEGIPLAQVAAGGAHSFAL------SLSGAVFG---WGMNNAGQLGLSDEEDRESPCH 235

Query: 361 VPLV 364
           V L+
Sbjct: 236 VKLL 239



 Score = 47.4 bits (111), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 37/115 (32%), Positives = 59/115 (51%), Gaps = 20/115 (17%)

Query: 266 VVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDI----NFHPVSISSGL 321
           V ++ACG +HS+ L  +G + +CG N  GQLG  ++  G  P  I    + H V ++ G 
Sbjct: 36  VKEVACGGNHSVFLLEDGEVYTCGLNTKGQLGHGRE--GNKPEQIGALADQHIVHVACGE 93

Query: 322 GHSLAICEVRSSNVTGGARG-IVSWGWNRSSQLGRMGPDN---VPLVVEGLEGES 372
            HSLA+ +          RG + SWG     QLG M  ++   VP +++ L  ++
Sbjct: 94  SHSLALSD----------RGQLFSWGAGSDGQLGLMTTEDSVAVPRLIQKLNQQT 138


>gi|302784100|ref|XP_002973822.1| hypothetical protein SELMODRAFT_100519 [Selaginella moellendorffii]
 gi|300158154|gb|EFJ24777.1| hypothetical protein SELMODRAFT_100519 [Selaginella moellendorffii]
          Length = 413

 Score = 98.2 bits (243), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 103/346 (29%), Positives = 146/346 (42%), Gaps = 55/346 (15%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPS-DVTSVSAGHYHSLAVTNNGAVWA 87
           V  +G+G QG LGL  S     G  +EP     L S +  SVS G  H+L +T+ G V+A
Sbjct: 30  VALWGNGDQGRLGLSES-----GSQFEPVLCRALESHEPCSVSCGGAHTLILTDKGRVFA 84

Query: 88  WGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVV-SSAIGDDGSLWVWGKS 146
            G N+  QL  G    R +  DP  V G    + C   A+G   S+AI   G  +VWG++
Sbjct: 85  TGLNSSGQL--GVPLKRESSFDPVEVHGFP--DPCVHIAAGRYHSAAITSSGETYVWGRN 140

Query: 147 KRGQLGLGKDITEA-IVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIG 205
             GQLGLGK      I P ++E+LAG ++  ++ G  H+L   E G++  WG +   R G
Sbjct: 141 SEGQLGLGKRAKSVYITPQKMESLAGMRLKALALGTDHSLGLAETGQVLSWGTN---RFG 197

Query: 206 NLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVE 265
            LG    +   D   D                            +Y P I     +E ++
Sbjct: 198 CLGHGEMTGFFDFFKD--------------------------TNEYTPRIIH--CLEKLQ 229

Query: 266 VVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFHP--VSISSGLGH 323
           +  ++ G  HS     +G + S G     QLG    +    P  I   P   SIS G  H
Sbjct: 230 IRSVSAGLVHSACADDSGTIYSFGQGSMCQLGLGNNNDASQPCPIPDLPRVSSISCGGYH 289

Query: 324 SLAICEVRSSNVTGGARGIVSWGWNRSSQLGR-MGPDNVPLVVEGL 368
           + AI +            I +WG N    LG      + PL +E L
Sbjct: 290 TGAITQDGD---------IYTWGSNEHGCLGSGFRASSKPLRLESL 326



 Score = 80.9 bits (198), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 84/335 (25%), Positives = 143/335 (42%), Gaps = 41/335 (12%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAW 88
           V + G  S G LG+P         +++P  V G P     ++AG YHS A+T++G  + W
Sbjct: 82  VFATGLNSSGQLGVPLKRE----SSFDPVEVHGFPDPCVHIAAGRYHSAAITSSGETYVW 137

Query: 89  GRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKR 148
           GRN+E QLG G   +++ +  P+++E L  + + A       S  + + G +  WG ++ 
Sbjct: 138 GRNSEGQLGLGK-RAKSVYITPQKMESLAGMRLKALALGTDHSLGLAETGQVLSWGTNRF 196

Query: 149 GQLGLG---------KDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKL--FGWG 197
           G LG G         KD  E   P  +  L   +I  VS G  H+    + G +  FG G
Sbjct: 197 GCLGHGEMTGFFDFFKDTNE-YTPRIIHCLEKLQIRSVSAGLVHSACADDSGTIYSFGQG 255

Query: 198 YSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIW- 256
                 +GN   A +  P+      SS S     +  I +   + + G  +   +   + 
Sbjct: 256 SMCQLGLGNNNDASQPCPIPDLPRVSSISCGGYHTGAITQDGDIYTWGSNEHGCLGSGFR 315

Query: 257 ---EPFLVEGVE---VVDIACGFDHSLVL-----------GRNGVLLSCGSNVYGQLGRE 299
              +P  +E +    + +I+CG+ H+  +           G  G   +   +  GQLG  
Sbjct: 316 ASSKPLRLESLAEAFMSEISCGWKHTAAISDGYIFSWGWGGSYGTYATQAESSGGQLGV- 374

Query: 300 KQDMGMF---PVDIN--FHPVSISSGLGHSLAICE 329
             D   F   P++++     + +S G  H+ AI E
Sbjct: 375 GTDFDFFEPVPIEMDDRLSALHVSCGFNHTAAILE 409


>gi|356512860|ref|XP_003525133.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC1-like [Glycine
           max]
          Length = 437

 Score = 97.8 bits (242), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 86/318 (27%), Positives = 144/318 (45%), Gaps = 37/318 (11%)

Query: 57  TRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGL 116
           + V   P  V  VSAG  HS+A+ +   V +WGR  + QLG G  + R        ++G 
Sbjct: 7   SEVAAPPRRVLLVSAGASHSVALLSGNVVCSWGRGEDGQLGHGDTDDRLFPTKLSALDGQ 66

Query: 117 DQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVK 176
           D + V       +  S  G D   W WG    G+LG G D ++ ++P  ++AL G  I +
Sbjct: 67  DIICVTCGADHTMARSESGRDVYSWGWGDF--GRLGHG-DHSDLLIPHPIKALQGLMIQQ 123

Query: 177 VSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIE 236
           ++ G  H LA T D ++  WG + +G +G LG A E S L   I    E   ++ ++  E
Sbjct: 124 IACGDSHCLAVTMDSQVLSWGRNQNGELG-LGTA-EDSLLPQKIQIFEEIPIKMVAAGAE 181

Query: 237 KAQKLVSEGM----------------EKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLG 280
            +  +  +G                   ++ +P   E   V+G ++  +ACG+ H++ + 
Sbjct: 182 HSVAITKDGNLYGWGWGRYGNLGLGDRNDRLLP---EKVTVDGDKMAMVACGWRHTICVS 238

Query: 281 RNGVLLSCGSNVYGQLGREKQDMGMFPVDI----NFHPVSISSGLGHSLAICEVRSSNVT 336
            +G L + G   YGQLG    +  + P  +    +     +S G  HS+A+         
Sbjct: 239 SSGGLYTNGWGKYGQLGHGDFEDHLVPRKVQALSDKFISQVSGGWRHSMALTS------- 291

Query: 337 GGARGIVSWGWNRSSQLG 354
             +  ++ WGWN+  Q+G
Sbjct: 292 --SGQLLGWGWNKFGQIG 307



 Score = 82.4 bits (202), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 81/317 (25%), Positives = 123/317 (38%), Gaps = 73/317 (23%)

Query: 12  VNVLTSRIFMRSASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPS-DVTSVS 70
           V         RS SG  V S+G G  G LG      G   D   P  +  L    +  ++
Sbjct: 71  VTCGADHTMARSESGRDVYSWGWGDFGRLG-----HGDHSDLLIPHPIKALQGLMIQQIA 125

Query: 71  AGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVV 130
            G  H LAVT +  V +WGRN   +LG G  E       P++++  +++ +    A    
Sbjct: 126 CGDSHCLAVTMDSQVLSWGRNQNGELGLGTAEDSLL---PQKIQIFEEIPIKMVAAGAEH 182

Query: 131 SSAIGDDGSLWVWGKSKRGQLGLGK----------------------------------- 155
           S AI  DG+L+ WG  + G LGLG                                    
Sbjct: 183 SVAITKDGNLYGWGWGRYGNLGLGDRNDRLLPEKVTVDGDKMAMVACGWRHTICVSSSGG 242

Query: 156 ---------------DITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSA 200
                          D  + +VP +V+AL+ + I +VS GW H++A T  G+L GWG++ 
Sbjct: 243 LYTNGWGKYGQLGHGDFEDHLVPRKVQALSDKFISQVSGGWRHSMALTSSGQLLGWGWNK 302

Query: 201 DGRIGNLGKALESSPLDSNIDRSSE--------------SDQEISSSTIEKAQKLVSEGM 246
            G+IG        SP+  N     +              +++E   S    A   +  G 
Sbjct: 303 FGQIGVGNNFDCCSPMQVNFPHDQKVQMISCGWRHTIAVTERENVYSWGRGANGQLGNGE 362

Query: 247 EKEKYMPIIWEPFLVEG 263
             ++ +P I E F V+G
Sbjct: 363 TIDRNVPTIIEAFSVDG 379


>gi|393912009|gb|EJD76547.1| hect domain and RLD 4 [Loa loa]
          Length = 1043

 Score = 97.8 bits (242), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 96/358 (26%), Positives = 158/358 (44%), Gaps = 36/358 (10%)

Query: 32  FGDGSQGALGL-PTSLTGVGGDAYEPTRVPGLPS-----DVTSVSAGHYHSLAVTNNGAV 85
           FG  S G L   P S          P  V G P+      V +V++G  H+L + N+G V
Sbjct: 9   FGCASDGQLAFRPNSAGNDAQMMLFPHLVYGAPTGQHGVTVKAVASGEKHTLFLANDGKV 68

Query: 86  WAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGK 145
           W+ G N   +LGRG ++  +    P  +   + V +    A    S A+ DDG L+ WG 
Sbjct: 69  WSCGSNYNGELGRGGVKEGSYTIYPVHIS--NAVRIIQISAGRSHSMAVSDDGRLFAWGS 126

Query: 146 SKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIG 205
           +  GQL +  DI  +  P RV +L   + V+V+ G  H ++    G++F WG  +DGRI 
Sbjct: 127 NSHGQLAMSGDILISDTPKRVPSLP--ETVQVACGASHTVSLNGGGRVFIWGQQSDGRIR 184

Query: 206 NLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYM-----PIIWEPFL 260
           +    +E   L  ++     S   + +  +  +  L + G  +E  +       +  P  
Sbjct: 185 HSPAEVE---LFVSVPIIQISAGNLFTMALTASGTLFAWGRNEEGQLGNFTNRDVINPRE 241

Query: 261 VEGVE-VVDIACGFDHSLVLGRNGVLLSCGSNVYGQLG-----REKQDMGMFPVDINFHP 314
           V  +  VV + CG  HS+ L   G + SCGS+ +GQLG     R +  M      +  H 
Sbjct: 242 VPNINSVVVVECGDSHSIALTHEGRVFSCGSDSFGQLGCGQPSRSQNCMRGITEMLGSHV 301

Query: 315 VSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPDN--VPLVVEGLEG 370
             I+ G  H++ +   +          + ++G N + QLG     N   P +++ +E 
Sbjct: 302 TRIACGRCHTIVVANGK----------MHTFGLNSNGQLGHGNTRNQITPRMIDSVEN 349


>gi|73952751|ref|XP_860006.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC4 isoform 9
           [Canis lupus familiaris]
          Length = 1054

 Score = 97.8 bits (242), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 66/245 (26%), Positives = 115/245 (46%), Gaps = 43/245 (17%)

Query: 55  EPTRVPGLPS-DVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRV 113
           +P +V  L + ++ +VS G  H+LA+ + G V+AWG +++ QLG   L S      P+ +
Sbjct: 74  KPEQVVALDAQNIVAVSCGEAHTLALNDKGQVYAWGLDSDGQLG--LLGSEECIRVPRNI 131

Query: 114 EGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEK 173
           + L  + +         S A+  +G  + WG++K GQLGLG D  +   P  +++L G  
Sbjct: 132 KSLSDIQIVQVACGYYHSLALSKEGEFFCWGQNKYGQLGLGIDCKKQASPQLIKSLLGIP 191

Query: 174 IVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSS 233
            ++V+ G  H+   T  G +FGWG +  G++G          L+                
Sbjct: 192 FMQVAAGGAHSFVLTLSGAIFGWGRNKFGQLG----------LND--------------- 226

Query: 234 TIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVY 293
                        E ++Y+P + +    +  ++V I CG DH+  L + G + + G+  Y
Sbjct: 227 -------------ENDRYVPNLLKSLRTQ--KIVYICCGEDHTAALTKEGGVFTFGAGGY 271

Query: 294 GQLGR 298
           GQLG 
Sbjct: 272 GQLGH 276



 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 60/192 (31%), Positives = 99/192 (51%), Gaps = 16/192 (8%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVP-GLPS----DVTSVSAGHYHSLAVTNNG 83
           V ++G  S G LGL      +G +  E  RVP  + S     +  V+ G+YHSLA++  G
Sbjct: 105 VYAWGLDSDGQLGL------LGSE--ECIRVPRNIKSLSDIQIVQVACGYYHSLALSKEG 156

Query: 84  AVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVW 143
             + WG+N   QLG G    +     P+ ++ L  +      A G  S  +   G+++ W
Sbjct: 157 EFFCWGQNKYGQLGLGIDCKKQA--SPQLIKSLLGIPFMQVAAGGAHSFVLTLSGAIFGW 214

Query: 144 GKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGR 203
           G++K GQLGL  D  +  VP+ +++L  +KIV +  G  H  A T++G +F +G    G+
Sbjct: 215 GRNKFGQLGLN-DENDRYVPNLLKSLRTQKIVYICCGEDHTAALTKEGGVFTFGAGGYGQ 273

Query: 204 IGNLGKALESSP 215
           +G+   + E +P
Sbjct: 274 LGHNSTSHEINP 285



 Score = 74.3 bits (181), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 69/273 (25%), Positives = 111/273 (40%), Gaps = 57/273 (20%)

Query: 87  AWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKS 146
            WG  +  QLG G ++      +P++ +      V         +  + DDG+++  G +
Sbjct: 3   CWGNASFGQLGLGGIDEEIVL-EPRKSDFFINKKVRDVGCGLRHTVFVLDDGTVYTCGCN 61

Query: 147 KRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGN 206
             GQLG  K   +   P +V AL  + IV VS G  H LA  + G+++ WG  +DG++G 
Sbjct: 62  DLGQLGHEKSRKK---PEQVVALDAQNIVAVSCGEAHTLALNDKGQVYAWGLDSDGQLGL 118

Query: 207 LGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEV 266
           LG   E   +  NI   S+                                      +++
Sbjct: 119 LGSE-ECIRVPRNIKSLSD--------------------------------------IQI 139

Query: 267 VDIACGFDHSLVLGRNGVLLSCGSNVYGQLG-----REKQDMGMFPVDINFHPVSISSGL 321
           V +ACG+ HSL L + G     G N YGQLG     +++    +    +    + +++G 
Sbjct: 140 VQVACGYYHSLALSKEGEFFCWGQNKYGQLGLGIDCKKQASPQLIKSLLGIPFMQVAAGG 199

Query: 322 GHSLAICEVRSSNVTGGARGIVSWGWNRSSQLG 354
            HS  +          GA  I  WG N+  QLG
Sbjct: 200 AHSFVL-------TLSGA--IFGWGRNKFGQLG 223


>gi|393912010|gb|EJD76548.1| hect domain and RLD 4, variant [Loa loa]
          Length = 1017

 Score = 97.8 bits (242), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 96/358 (26%), Positives = 158/358 (44%), Gaps = 36/358 (10%)

Query: 32  FGDGSQGALGL-PTSLTGVGGDAYEPTRVPGLPS-----DVTSVSAGHYHSLAVTNNGAV 85
           FG  S G L   P S          P  V G P+      V +V++G  H+L + N+G V
Sbjct: 9   FGCASDGQLAFRPNSAGNDAQMMLFPHLVYGAPTGQHGVTVKAVASGEKHTLFLANDGKV 68

Query: 86  WAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGK 145
           W+ G N   +LGRG ++  +    P  +   + V +    A    S A+ DDG L+ WG 
Sbjct: 69  WSCGSNYNGELGRGGVKEGSYTIYPVHIS--NAVRIIQISAGRSHSMAVSDDGRLFAWGS 126

Query: 146 SKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIG 205
           +  GQL +  DI  +  P RV +L   + V+V+ G  H ++    G++F WG  +DGRI 
Sbjct: 127 NSHGQLAMSGDILISDTPKRVPSLP--ETVQVACGASHTVSLNGGGRVFIWGQQSDGRIR 184

Query: 206 NLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYM-----PIIWEPFL 260
           +    +E   L  ++     S   + +  +  +  L + G  +E  +       +  P  
Sbjct: 185 HSPAEVE---LFVSVPIIQISAGNLFTMALTASGTLFAWGRNEEGQLGNFTNRDVINPRE 241

Query: 261 VEGVE-VVDIACGFDHSLVLGRNGVLLSCGSNVYGQLG-----REKQDMGMFPVDINFHP 314
           V  +  VV + CG  HS+ L   G + SCGS+ +GQLG     R +  M      +  H 
Sbjct: 242 VPNINSVVVVECGDSHSIALTHEGRVFSCGSDSFGQLGCGQPSRSQNCMRGITEMLGSHV 301

Query: 315 VSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPDN--VPLVVEGLEG 370
             I+ G  H++ +   +          + ++G N + QLG     N   P +++ +E 
Sbjct: 302 TRIACGRCHTIVVANGK----------MHTFGLNSNGQLGHGNTRNQITPRMIDSVEN 349


>gi|449280356|gb|EMC87683.1| RCC1 and BTB domain-containing protein 1 [Columba livia]
          Length = 531

 Score = 97.8 bits (242), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 56/162 (34%), Positives = 95/162 (58%), Gaps = 5/162 (3%)

Query: 62  LPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNV 121
           L   V  V+ G +HS+A++ +G ++AWG NN  Q+G G+  ++ T   P+RV    Q  +
Sbjct: 126 LIKKVVEVACGSHHSMALSFDGDLYAWGYNNCGQVGSGSTANQPT---PRRVSNCLQGKM 182

Query: 122 CAAFASGVVSS-AIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFG 180
               A G  SS A+  +G ++ WG +  GQLGLG +  + + P RV AL G  I++++ G
Sbjct: 183 VVGIACGQTSSMAVVSNGEVYGWGYNGNGQLGLGNNGNQ-LTPCRVAALHGVCILQIACG 241

Query: 181 WGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDR 222
           + H LA T++G L+ WG +  G++G   K+ + SP+   +++
Sbjct: 242 YAHTLALTDEGLLYAWGANTYGQLGTGNKSNQLSPVQIMMEK 283



 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 79/296 (26%), Positives = 120/296 (40%), Gaps = 73/296 (24%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLP-SDVTSVSAGH-YHSLAVTNNGAVW 86
           V  FG      LG     TG       P ++  L    ++S+S G   H +  T +G V+
Sbjct: 43  VFVFGLNCSNCLG-----TGDNQSTIVPKKLEALCGKKISSLSYGSGPHVVLCTEDGEVY 97

Query: 87  AWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVV---------SSAIGDD 137
           AWG N   QLG G              +G+  V VC       V         S A+  D
Sbjct: 98  AWGHNGYSQLGNGTTN-----------QGITPVQVCTNLLIKKVVEVACGSHHSMALSFD 146

Query: 138 GSLWVWGKSKRGQLGLGKDITEAIVPSRV-EALAGEKIVKVSFGWGHALAQTEDGKLFGW 196
           G L+ WG +  GQ+G G    +   P RV   L G+ +V ++ G   ++A   +G+++GW
Sbjct: 147 GDLYAWGYNNCGQVGSGSTANQP-TPRRVSNCLQGKMVVGIACGQTSSMAVVSNGEVYGW 205

Query: 197 GYSADGR--IGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPI 254
           GY+ +G+  +GN G  L    + +                                    
Sbjct: 206 GYNGNGQLGLGNNGNQLTPCRVAA------------------------------------ 229

Query: 255 IWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDI 310
                 + GV ++ IACG+ H+L L   G+L + G+N YGQLG   +   + PV I
Sbjct: 230 ------LHGVCILQIACGYAHTLALTDEGLLYAWGANTYGQLGTGNKSNQLSPVQI 279



 Score = 69.7 bits (169), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 75/286 (26%), Positives = 125/286 (43%), Gaps = 60/286 (20%)

Query: 76  SLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCA-AFASGVVSSAI 134
           ++ +T+N  V+ +G N    LG G  +S      PK++E L    + + ++ SG      
Sbjct: 34  AIYITHNDEVFVFGLNCSNCLGTGDNQSTIV---PKKLEALCGKKISSLSYGSGPHVVLC 90

Query: 135 GDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEA-LAGEKIVKVSFGWGHALAQTEDGKL 193
            +DG ++ WG +   QLG G    + I P +V   L  +K+V+V+ G  H++A + DG L
Sbjct: 91  TEDGEVYAWGHNGYSQLGNGT-TNQGITPVQVCTNLLIKKVVEVACGSHHSMALSFDGDL 149

Query: 194 FGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMP 253
           + WGY+  G++G+   A + +P            + +S+                     
Sbjct: 150 YAWGYNNCGQVGSGSTANQPTP------------RRVSNC-------------------- 177

Query: 254 IIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDI-NF 312
                  ++G  VV IACG   S+ +  NG +   G N  GQLG       + P  +   
Sbjct: 178 -------LQGKMVVGIACGQTSSMAVVSNGEVYGWGYNGNGQLGLGNNGNQLTPCRVAAL 230

Query: 313 HPVS---ISSGLGHSLAICEVRSSNVTGGARGIV-SWGWNRSSQLG 354
           H V    I+ G  H+LA+ +           G++ +WG N   QLG
Sbjct: 231 HGVCILQIACGYAHTLALTD----------EGLLYAWGANTYGQLG 266



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 66/246 (26%), Positives = 104/246 (42%), Gaps = 59/246 (23%)

Query: 134 IGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWG-HALAQTEDGK 192
           I  +  ++V+G +    LG G D    IVP ++EAL G+KI  +S+G G H +  TEDG+
Sbjct: 37  ITHNDEVFVFGLNCSNCLGTG-DNQSTIVPKKLEALCGKKISSLSYGSGPHVVLCTEDGE 95

Query: 193 LFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYM 252
           ++ WG++   ++GN                                      G   +   
Sbjct: 96  VYAWGHNGYSQLGN--------------------------------------GTTNQGIT 117

Query: 253 PI-IWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDIN 311
           P+ +    L++  +VV++ACG  HS+ L  +G L + G N  GQ+G         P  ++
Sbjct: 118 PVQVCTNLLIK--KVVEVACGSHHSMALSFDGDLYAWGYNNCGQVGSGSTANQPTPRRVS 175

Query: 312 -----FHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQ--LGRMGPDNVPLV 364
                   V I+ G   S+A+  V +  V G       WG+N + Q  LG  G    P  
Sbjct: 176 NCLQGKMVVGIACGQTSSMAV--VSNGEVYG-------WGYNGNGQLGLGNNGNQLTPCR 226

Query: 365 VEGLEG 370
           V  L G
Sbjct: 227 VAALHG 232


>gi|330837692|ref|YP_004412333.1| chromosome condensation regulator RCC1 [Sphaerochaeta coccoides DSM
           17374]
 gi|329749595|gb|AEC02951.1| regulator of chromosome condensation RCC1 [Sphaerochaeta coccoides
           DSM 17374]
          Length = 707

 Score = 97.8 bits (242), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 84/274 (30%), Positives = 128/274 (46%), Gaps = 52/274 (18%)

Query: 33  GDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNN 92
           G  S G LG+     G   +   P +V  + SDV +VS G  H++ +  NG +WA G N 
Sbjct: 473 GFNSNGQLGI-----GNNDNKDTPVQVASMDSDVAAVSTGELHTMILKKNGTLWATGYNA 527

Query: 93  EVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAI--GDDGSLWVWGKSKRGQ 150
             QLG G    R   N P++V      NV A FA GV  + I   +DG+LW  G +  GQ
Sbjct: 528 SGQLGDGYNTER---NTPEQV----MENVAAVFA-GVGHTMILKEEDGTLWATGSNGYGQ 579

Query: 151 LGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKA 210
           LG+G +   +  P++V ++ G  +  VS GWGH +   EDG L+  GY+  G +G     
Sbjct: 580 LGVGDNDGRS-TPAQVTSM-GSDVAVVSGGWGHTIILKEDGLLWATGYNGSGELG----- 632

Query: 211 LESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIA 270
                 D  +  S    Q  +S+T+               +M            +VV ++
Sbjct: 633 ------DGTMINSKTPVQVKASTTL-------------GDFM-----------TDVVAVS 662

Query: 271 CGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMG 304
            G +H+++L ++G L + G N +GQLG     +G
Sbjct: 663 AGMNHTIILKKDGTLWATGHNGFGQLGLGDSSLG 696



 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 85/304 (27%), Positives = 142/304 (46%), Gaps = 37/304 (12%)

Query: 52  DAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRAT----W 107
           D  +    P +   V SVSAG YH++ +  +G +WA G N   QLG G   +R+T    W
Sbjct: 324 DTGDGINAPAVKVRVKSVSAGGYHTMILKTDGTLWATGNNEYGQLGVGDTTNRSTPEQVW 383

Query: 108 NDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVE 167
           + P     +   +V A FA    +  +  DG+LW  G +  GQLG G  I +  +P +V+
Sbjct: 384 DSPDG--SVKMTDVAAVFAGETHTLILKKDGTLWATGYNGVGQLGDGT-IIDKTIPVQVK 440

Query: 168 ALAG---EKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIG-----NLGKALESSPLDSN 219
             AG     +  VS G  H +   +DG L+  G++++G++G     N    ++ + +DS+
Sbjct: 441 DDAGGFMTGVKAVSAGAAHTMILKKDGTLWATGFNSNGQLGIGNNDNKDTPVQVASMDSD 500

Query: 220 IDRSSESDQEISSSTIEKAQKL----------VSEGMEKEKYMPIIWEPFLVEGVEVVDI 269
           +  ++ S  E+ +  ++K   L          + +G   E+  P      ++E V  V  
Sbjct: 501 V--AAVSTGELHTMILKKNGTLWATGYNASGQLGDGYNTERNTP----EQVMENVAAV-- 552

Query: 270 ACGFDHSLVLG-RNGVLLSCGSNVYGQLGREKQDMGMFPVDIN---FHPVSISSGLGHSL 325
             G  H+++L   +G L + GSN YGQLG    D    P  +         +S G GH++
Sbjct: 553 FAGVGHTMILKEEDGTLWATGSNGYGQLGVGDNDGRSTPAQVTSMGSDVAVVSGGWGHTI 612

Query: 326 AICE 329
            + E
Sbjct: 613 ILKE 616


>gi|159037340|ref|YP_001536593.1| regulator of chromosome condensation, RCC1 [Salinispora arenicola
           CNS-205]
 gi|157916175|gb|ABV97602.1| regulator of chromosome condensation, RCC1 [Salinispora arenicola
           CNS-205]
          Length = 563

 Score = 97.4 bits (241), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 81/293 (27%), Positives = 132/293 (45%), Gaps = 27/293 (9%)

Query: 64  SDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCA 123
           + +T+++AG  HSLAVT+ G + AWG N+  QLG G   +R   N P  V+      + A
Sbjct: 146 TTITAIAAGKSHSLAVTSAGTMLAWGLNSAGQLGDGTTTNR---NTPVAVDLPTGTTITA 202

Query: 124 AFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGH 183
             A    S A+   G++  WG++  GQLG G   T    P  V+   G  I  ++ G GH
Sbjct: 203 IAAGNGHSLALTSAGTMLAWGENTWGQLGDGT-TTNRNTPVTVDLPTGTTITALAGGGGH 261

Query: 184 ALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSS-----------ESDQEISS 232
           +LA T  G +  WG++  G++G+      ++P+  ++   +            S    S+
Sbjct: 262 SLAVTSTGTMLAWGFNFWGQLGDGTTTNRNTPVAVDLPTGTTITAIAGGGGGHSLAATST 321

Query: 233 STIE----KAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACG--FDHSLVLGRNGVLL 286
            T+      +   + +G    +  P+  +  L  G  +  IA G    HSL     G +L
Sbjct: 322 GTMLAWGLNSFGQLGDGTTSNRSTPVTVD--LPAGTTITAIAAGGGSGHSLAATSTGTML 379

Query: 287 SCGSNVYGQLGREKQDMGMFPVDINFHP----VSISSGLGHSLAICEVRSSNV 335
           + G+N  GQLG         PV ++        ++++G  HSLAI    S+  
Sbjct: 380 AWGANTLGQLGDGTTSNRSTPVTVDLPAGTTITAVTAGGFHSLAIVPSTSTTT 432



 Score = 85.1 bits (209), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 83/301 (27%), Positives = 122/301 (40%), Gaps = 61/301 (20%)

Query: 62  LPSD--VTSVSAG-HYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQ 118
           LP+D  +T+++AG + HSLAVT+   + AWG N   QLG G   +R   N P  V+    
Sbjct: 89  LPADTTITAIAAGVNGHSLAVTSASTMLAWGFNTWGQLGDGTTTNR---NTPVAVDLPTG 145

Query: 119 VNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVS 178
             + A  A    S A+   G++  WG +  GQLG G   T    P  V+   G  I  ++
Sbjct: 146 TTITAIAAGKSHSLAVTSAGTMLAWGLNSAGQLGDGT-TTNRNTPVAVDLPTGTTITAIA 204

Query: 179 FGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKA 238
            G GH+LA T  G +  WG +  G++G                                 
Sbjct: 205 AGNGHSLALTSAGTMLAWGENTWGQLG--------------------------------- 231

Query: 239 QKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGR 298
                +G    +  P+  +  L  G  +  +A G  HSL +   G +L+ G N +GQLG 
Sbjct: 232 -----DGTTTNRNTPVTVD--LPTGTTITALAGGGGHSLAVTSTGTMLAWGFNFWGQLGD 284

Query: 299 EKQDMGMFPVDINF-----HPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQL 353
                   PV ++             G GHSLA     +         +++WG N   QL
Sbjct: 285 GTTTNRNTPVAVDLPTGTTITAIAGGGGGHSLAATSTGT---------MLAWGLNSFGQL 335

Query: 354 G 354
           G
Sbjct: 336 G 336



 Score = 80.9 bits (198), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 77/288 (26%), Positives = 114/288 (39%), Gaps = 62/288 (21%)

Query: 87  AWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVV--SSAIGDDGSLWVWG 144
           AWG N   QLG G   +R   N P  V+ L       A A+GV   S A+    ++  WG
Sbjct: 64  AWGFNALGQLGDGTTTNR---NTPVTVD-LPADTTITAIAAGVNGHSLAVTSASTMLAWG 119

Query: 145 KSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRI 204
            +  GQLG G   T    P  V+   G  I  ++ G  H+LA T  G +  WG ++ G++
Sbjct: 120 FNTWGQLGDGT-TTNRNTPVAVDLPTGTTITAIAAGKSHSLAVTSAGTMLAWGLNSAGQL 178

Query: 205 GNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGV 264
           G                                      +G    +  P+  +  L  G 
Sbjct: 179 G--------------------------------------DGTTTNRNTPVAVD--LPTGT 198

Query: 265 EVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFHP----VSISSG 320
            +  IA G  HSL L   G +L+ G N +GQLG         PV ++        +++ G
Sbjct: 199 TITAIAAGNGHSLALTSAGTMLAWGENTWGQLGDGTTTNRNTPVTVDLPTGTTITALAGG 258

Query: 321 LGHSLAICEVRSSNVTGGARGIVSWGWNRSSQL--GRMGPDNVPLVVE 366
            GHSLA+    +         +++WG+N   QL  G     N P+ V+
Sbjct: 259 GGHSLAVTSTGT---------MLAWGFNFWGQLGDGTTTNRNTPVAVD 297


>gi|168052711|ref|XP_001778783.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162669789|gb|EDQ56369.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 461

 Score = 97.4 bits (241), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 87/290 (30%), Positives = 135/290 (46%), Gaps = 24/290 (8%)

Query: 23  SASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPS-DVTSVSAGHYHSLAVTN 81
           S S   V S+G G  G LG      G   D + P  +  L   +V  ++ G  H LA+T 
Sbjct: 82  SNSTKTVYSWGWGDFGRLG-----HGNSSDLFIPQPIKALKGLEVKQIACGDSHCLAITT 136

Query: 82  NGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLW 141
           +G V  WGRN   QLG G  E   T   P ++   + V V    A    ++A+ ++G L+
Sbjct: 137 DGEVLGWGRNQNGQLGLGHTEDVLT---PHKLTAFEGVAVKMLAAGAEHTTAVTENGKLY 193

Query: 142 VWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSAD 201
            WG  + G LGLG D  + +VP +V A+AGE +  V+ GW H +   E G ++ +G+S  
Sbjct: 194 GWGWGRYGNLGLG-DREDRLVPDQVAAVAGELMKMVACGWRHTICVAESGNMYTFGWSKY 252

Query: 202 GRIGNLGKALESSPLDSNIDRSSESDQEIS-----SSTIEKAQKLVSEGMEKEKYMPI-- 254
           G++G+   A    P      +S +  Q I+     +  ++   +L   G  K   +    
Sbjct: 253 GQLGHGDFADHLIPHQVQALKSKKI-QAITGGWRHTFALDSDGRLYGWGWNKFGQVGCGN 311

Query: 255 ---IWEPFLVEGVE---VVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGR 298
                 P LV+G++   V  + CG+ H+L +   G + S G    GQLG 
Sbjct: 312 TEDQSSPQLVKGLQDQVVTVVQCGWRHTLAMTDRGNVYSWGRGTSGQLGH 361



 Score = 85.5 bits (210), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 81/337 (24%), Positives = 156/337 (46%), Gaps = 46/337 (13%)

Query: 61  GLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVN 120
           G+   V ++SAG  HS+A+ +   V +WGR  + QLG G  E R   + P  V  LD   
Sbjct: 11  GVRRQVLALSAGASHSVALLSGDLVCSWGRGEDGQLGHGDAEER---HFPTIVSALDDCE 67

Query: 121 VCAAFASGVVSSAIGDD-GSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSF 179
           + +       ++A+ +   +++ WG    G+LG G   ++  +P  ++AL G ++ +++ 
Sbjct: 68  ISSVTCGADHTTALSNSTKTVYSWGWGDFGRLGHGNS-SDLFIPQPIKALKGLEVKQIAC 126

Query: 180 GWGHALAQTEDGKLFGWGYSADGRIG-----NLGKALESSPLDSNIDRSSESDQEISSST 234
           G  H LA T DG++ GWG + +G++G     ++    + +  +    +   +  E +++ 
Sbjct: 127 GDSHCLAITTDGEVLGWGRNQNGQLGLGHTEDVLTPHKLTAFEGVAVKMLAAGAEHTTAV 186

Query: 235 IEKAQKL---------VSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVL 285
            E  +           +  G  +++ +P   +   V G  +  +ACG+ H++ +  +G +
Sbjct: 187 TENGKLYGWGWGRYGNLGLGDREDRLVPD--QVAAVAGELMKMVACGWRHTICVAESGNM 244

Query: 286 LSCGSNVYGQLGREKQDMGMFPVDINFHPVSISSGLGHSLAICEVRSSNVTGGARG---- 341
            + G + YGQLG      G F   +  H V          A+   +   +TGG R     
Sbjct: 245 YTFGWSKYGQLGH-----GDFADHLIPHQVQ---------ALKSKKIQAITGGWRHTFAL 290

Query: 342 -----IVSWGWNRSSQLGRMGPDN--VPLVVEGLEGE 371
                +  WGWN+  Q+G    ++   P +V+GL+ +
Sbjct: 291 DSDGRLYGWGWNKFGQVGCGNTEDQSSPQLVKGLQDQ 327



 Score = 67.8 bits (164), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 59/215 (27%), Positives = 96/215 (44%), Gaps = 20/215 (9%)

Query: 32  FGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTS-VSAGHYHSLAVTNNGAVWAWGR 90
           +G G  G LGL     G   D   P +V  +  ++   V+ G  H++ V  +G ++ +G 
Sbjct: 195 WGWGRYGNLGL-----GDREDRLVPDQVAAVAGELMKMVACGWRHTICVAESGNMYTFGW 249

Query: 91  NNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQ 150
           +   QLG G          P +V+ L    + A       + A+  DG L+ WG +K GQ
Sbjct: 250 SKYGQLGHGDFADHLI---PHQVQALKSKKIQAITGGWRHTFALDSDGRLYGWGWNKFGQ 306

Query: 151 LGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKA 210
           +G G +  +   P  V+ L  + +  V  GW H LA T+ G ++ WG    G++G+    
Sbjct: 307 VGCG-NTEDQSSPQLVKGLQDQVVTVVQCGWRHTLAMTDRGNVYSWGRGTSGQLGH---- 361

Query: 211 LESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEG 245
                    +DRS+    EI SS     +++ S G
Sbjct: 362 ------GDTVDRSTPKRIEILSSDGFACEQIESSG 390


>gi|395541966|ref|XP_003772907.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC3, partial
           [Sarcophilus harrisii]
          Length = 638

 Score = 97.4 bits (241), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 71/278 (25%), Positives = 124/278 (44%), Gaps = 47/278 (16%)

Query: 55  EPTRVPGLPSD-VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRV 113
           +P ++  L    +  V+ G  HSLA+++ G +++WG  ++ QLG    E       P+ +
Sbjct: 75  KPEQIGALADQHIVHVACGESHSLALSDQGQLFSWGAGSDGQLGHTTTEDSVAI--PRLI 132

Query: 114 EGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEK 173
           + L+Q  +           A+  DG  + WG+++ GQLGLGK+      P RV++L G  
Sbjct: 133 KKLNQQMILQVSCGNWHCMALAADGQFFTWGQNRHGQLGLGKEFPSQASPQRVKSLEGIP 192

Query: 174 IVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSS 233
           + +V+ G  H+ A +  G +FGWG +  G++G          L    DR S    +    
Sbjct: 193 LAQVAAGGAHSFALSLSGAVFGWGRNNAGQLG----------LSDETDRQSPCHVK---- 238

Query: 234 TIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVY 293
                                     L+   +VV I+CG +H+ VL ++G + + G+  +
Sbjct: 239 --------------------------LLRTQKVVYISCGEEHTAVLTKSGGVFTFGAGSF 272

Query: 294 GQLGREKQDMGMFPVDI----NFHPVSISSGLGHSLAI 327
           GQLG +  +  + P  +          I+ G  H+LA 
Sbjct: 273 GQLGHDSMNDEVNPRRVLELMGSEVTQIACGRQHTLAF 310



 Score = 48.5 bits (114), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 34/113 (30%), Positives = 57/113 (50%), Gaps = 18/113 (15%)

Query: 266 VVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDI----NFHPVSISSGL 321
           + ++ACG +HS+ L  +G + +CGSN  GQLG E++  G  P  I    + H V ++ G 
Sbjct: 37  IKEVACGGNHSIFLLEDGEVYTCGSNTKGQLGHERE--GNKPEQIGALADQHIVHVACGE 94

Query: 322 GHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPDN---VPLVVEGLEGE 371
            HSLA+ +            + SWG     QLG    ++   +P +++ L  +
Sbjct: 95  SHSLALSD---------QGQLFSWGAGSDGQLGHTTTEDSVAIPRLIKKLNQQ 138


>gi|338531741|ref|YP_004665075.1| regulator of chromosome condensation [Myxococcus fulvus HW-1]
 gi|337257837|gb|AEI63997.1| regulator of chromosome condensation [Myxococcus fulvus HW-1]
          Length = 1497

 Score = 97.4 bits (241), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 99/331 (29%), Positives = 151/331 (45%), Gaps = 42/331 (12%)

Query: 55  EPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVE 114
           +P +V GLP+ + +++AG  HSLA+  NG VWAWG+N   Q G G+  +  T   P++V 
Sbjct: 40  QPAQVIGLPA-IKAIAAGIAHSLALDTNGDVWAWGQNAAGQAGIGS--TGGTVLQPQKVP 96

Query: 115 GLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKI 174
            L  +   A  A+G  S A+G+DGSLW WG++  GQ+G G        P++V+ L G  I
Sbjct: 97  ALSGIQ--AIAANGSYSLALGEDGSLWAWGQNSSGQVGTGSTSVSVHTPAQVQGLPG--I 152

Query: 175 VKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALES-SP-----------LDSNIDR 222
             ++ G  H LA   +G+++GWG +  G+ G    +    SP           + +    
Sbjct: 153 RAIAAGLNHVLALDTEGRVWGWGANTSGQTGRGSTSTTVLSPTQVAGLPPVRAIAAGAGH 212

Query: 223 SSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGV-EVVDIACGFDHSLVLGR 281
           S   D+   +            G       P++  P  V G+  V DIA G   SL +  
Sbjct: 213 SLAVDEAFGNVWAWGQNNFGQTGTGATSTTPVL-NPTAVGGIFAVTDIAAGHFFSLAIVG 271

Query: 282 NGVLLSCGSNVYGQLGREKQDMGMFPVDIN--FHPVSISSGLGHSLAI---CEVRSSNVT 336
            G  ++ G N++GQLG         PV +       ++++G  H+L+I   C V      
Sbjct: 272 EGHAVAWGHNIFGQLGNGSTAASAIPVSVTGLGDARAVAAGAQHALSIRPGCPVW----- 326

Query: 337 GGARGIVSWGWNRSSQLG----RMGPDNVPL 363
                  SWG N   QLG       P + PL
Sbjct: 327 -------SWGNNGQGQLGTGSVSTAPTSTPL 350



 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 84/300 (28%), Positives = 133/300 (44%), Gaps = 59/300 (19%)

Query: 69  VSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASG 128
           ++AG YHSL +  NG VW+WG+N   QLG G++ S    + P +V GL  +   A  A  
Sbjct: 1   MAAGAYHSLFLKKNGEVWSWGQNTAGQLGTGSV-STTPQSQPAQVIGLPAIK--AIAAGI 57

Query: 129 VVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQT 188
             S A+  +G +W WG++  GQ G+G      + P +V AL+G  I  ++    ++LA  
Sbjct: 58  AHSLALDTNGDVWAWGQNAAGQAGIGSTGGTVLQPQKVPALSG--IQAIAANGSYSLALG 115

Query: 189 EDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEK 248
           EDG L+ WG ++ G++G                          S+++             
Sbjct: 116 EDGSLWAWGQNSSGQVG------------------------TGSTSVS------------ 139

Query: 249 EKYMPIIWEPFLVEGVE-VVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMF- 306
                 +  P  V+G+  +  IA G +H L L   G +   G+N  GQ GR      +  
Sbjct: 140 ------VHTPAQVQGLPGIRAIAAGLNHVLALDTEGRVWGWGANTSGQTGRGSTSTTVLS 193

Query: 307 PVDI-NFHPV-SISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPDNVPLV 364
           P  +    PV +I++G GHSLA+ E   +        + +WG N   Q G       P++
Sbjct: 194 PTQVAGLPPVRAIAAGAGHSLAVDEAFGN--------VWAWGQNNFGQTGTGATSTTPVL 245



 Score = 68.2 bits (165), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 54/166 (32%), Positives = 83/166 (50%), Gaps = 11/166 (6%)

Query: 54  YEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRV 113
           + P +V GLP  + +++AG  H LA+   G VW WG N   Q GRG+  +  T   P +V
Sbjct: 141 HTPAQVQGLPG-IRAIAAGLNHVLALDTEGRVWGWGANTSGQTGRGSTST--TVLSPTQV 197

Query: 114 EGLDQVNVCAAFA--SGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIV-PSRVEALA 170
            GL  V   AA A  S  V  A G+   +W WG++  GQ G G   T  ++ P+ V  + 
Sbjct: 198 AGLPPVRAIAAGAGHSLAVDEAFGN---VWAWGQNNFGQTGTGATSTTPVLNPTAVGGIF 254

Query: 171 GEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPL 216
              +  ++ G   +LA   +G    WG++  G++GN   A  + P+
Sbjct: 255 --AVTDIAAGHFFSLAIVGEGHAVAWGHNIFGQLGNGSTAASAIPV 298



 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 73/223 (32%), Positives = 102/223 (45%), Gaps = 21/223 (9%)

Query: 56  PTRVPGLPSDVTSVSAGHYHSLAVTNN-GAVWAWGRNNEVQLGRGALESRATWNDPKRVE 114
           PT+V GLP  V +++AG  HSLAV    G VWAWG+NN  Q G GA  +    N P  V 
Sbjct: 194 PTQVAGLPP-VRAIAAGAGHSLAVDEAFGNVWAWGQNNFGQTGTGATSTTPVLN-PTAVG 251

Query: 115 GLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKI 174
           G+  V   AA      S AI  +G    WG +  GQLG G     AI P  V  L   + 
Sbjct: 252 GIFAVTDIAAGH--FFSLAIVGEGHAVAWGHNIFGQLGNGSTAASAI-PVSVTGLGDARA 308

Query: 175 VKVSFGWGHALAQTEDGKLFGWGYSADGRI--GNLGKALESSPLDSNI--------DRSS 224
           V    G  HAL+      ++ WG +  G++  G++  A  S+PL S I        D   
Sbjct: 309 VAA--GAQHALSIRPGCPVWSWGNNGQGQLGTGSVSTAPTSTPLSSLIINTFYFDGDMDG 366

Query: 225 ESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWE--PFLVEGVE 265
             D+ I+    E +   V E ++ + Y    +   P +  G++
Sbjct: 367 FGDEYIAEQACEPSPGFVEE-LDCDDYSMTTFPGAPEMCNGMD 408



 Score = 43.5 bits (101), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 25/75 (33%), Positives = 39/75 (52%), Gaps = 14/75 (18%)

Query: 32  FGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRN 91
            G+GS  A  +P S+TG+G              D  +V+AG  H+L++     VW+WG N
Sbjct: 286 LGNGSTAASAIPVSVTGLG--------------DARAVAAGAQHALSIRPGCPVWSWGNN 331

Query: 92  NEVQLGRGALESRAT 106
            + QLG G++ +  T
Sbjct: 332 GQGQLGTGSVSTAPT 346


>gi|348506950|ref|XP_003441020.1| PREDICTED: RCC1 and BTB domain-containing protein 1-like
           [Oreochromis niloticus]
          Length = 651

 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 65/179 (36%), Positives = 95/179 (53%), Gaps = 5/179 (2%)

Query: 66  VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAF 125
           V  VS G +HS+A+T +G V+AWG NN  Q+G G   S A    P++V G  Q    +  
Sbjct: 250 VKEVSCGSHHSMALTLDGEVFAWGYNNCGQIGSG---STANQPYPRKVTGCLQGKNASGI 306

Query: 126 ASGVVSS-AIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHA 184
             G  SS A+ D+G ++ WG +  GQLG+G +  + + P RV AL G  I ++  G+GH 
Sbjct: 307 TCGQTSSMALVDNGEVYGWGYNGNGQLGIGNNGNQ-LTPCRVAALQGMCIQQIVSGYGHC 365

Query: 185 LAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVS 243
           LA T+ G L+ WG +  G++G   K+   SP+    D+    +     ST   A K  S
Sbjct: 366 LALTDKGLLYAWGANTYGQLGTGTKSNHLSPVHIMADKERVVEVAACHSTHTSAAKTQS 424



 Score = 71.6 bits (174), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 76/298 (25%), Positives = 118/298 (39%), Gaps = 71/298 (23%)

Query: 26  GTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLP-SDVTSVSAGH-YHSLAVTNNG 83
           G  V  FG      LG     TG G     P ++  L    V S+S G   H L  T++G
Sbjct: 160 GNEVFVFGLNCSSCLG-----TGDGLSTVMPKKLDFLRGKKVASLSYGSGPHVLLATDDG 214

Query: 84  AVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVV---------SSAI 134
            ++AWG N   QLG G+        +P    GL  V + A   +  V         S A+
Sbjct: 215 QLFAWGHNGYSQLGNGS-------TNP----GLSPVLITANLQNKKVKEVSCGSHHSMAL 263

Query: 135 GDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLF 194
             DG ++ WG +  GQ+G G    +         L G+    ++ G   ++A  ++G+++
Sbjct: 264 TLDGEVFAWGYNNCGQIGSGSTANQPYPRKVTGCLQGKNASGITCGQTSSMALVDNGEVY 323

Query: 195 GWGYSADGR--IGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYM 252
           GWGY+ +G+  IGN G  L    + +                                  
Sbjct: 324 GWGYNGNGQLGIGNNGNQLTPCRVAA---------------------------------- 349

Query: 253 PIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDI 310
                   ++G+ +  I  G+ H L L   G+L + G+N YGQLG   +   + PV I
Sbjct: 350 --------LQGMCIQQIVSGYGHCLALTDKGLLYAWGANTYGQLGTGTKSNHLSPVHI 399



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 67/286 (23%), Positives = 115/286 (40%), Gaps = 54/286 (18%)

Query: 95  QLGR----GALESRATWNDPKRVEGLDQVNVCAAFASGVVSSA---IGDDGSLWVWGKSK 147
           QLGR    GA+   + W+    +   +   V  A   G  ++    I     ++V+G + 
Sbjct: 111 QLGRLSFAGAVMDVSKWSLFYLLSAQELATVRQACVFGTTANEAIYITHGNEVFVFGLNC 170

Query: 148 RGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWG-HALAQTEDGKLFGWGYSADGRIGN 206
              LG G  ++  ++P +++ L G+K+  +S+G G H L  T+DG+LF WG++   ++GN
Sbjct: 171 SSCLGTGDGLS-TVMPKKLDFLRGKKVASLSYGSGPHVLLATDDGQLFAWGHNGYSQLGN 229

Query: 207 LGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEV 266
                  SP+                        L++  ++ +K               V
Sbjct: 230 GSTNPGLSPV------------------------LITANLQNKK---------------V 250

Query: 267 VDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFHPVSISSGLGHSLA 326
            +++CG  HS+ L  +G + + G N  GQ+G        +P  +         G   S  
Sbjct: 251 KEVSCGSHHSMALTLDGEVFAWGYNNCGQIGSGSTANQPYPRKV----TGCLQGKNASGI 306

Query: 327 ICEVRSSNVTGGARGIVSWGWNRSSQL--GRMGPDNVPLVVEGLEG 370
            C   SS        +  WG+N + QL  G  G    P  V  L+G
Sbjct: 307 TCGQTSSMALVDNGEVYGWGYNGNGQLGIGNNGNQLTPCRVAALQG 352


>gi|330796931|ref|XP_003286517.1| hypothetical protein DICPUDRAFT_97415 [Dictyostelium purpureum]
 gi|325083498|gb|EGC36949.1| hypothetical protein DICPUDRAFT_97415 [Dictyostelium purpureum]
          Length = 815

 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 105/391 (26%), Positives = 172/391 (43%), Gaps = 66/391 (16%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSD-VTSVSAGHYHSLAVTNNGAVWA 87
           V S+G G +G LG+P  +      + +P  +  L  + V  V+ G++HSLA+T+ G V+ 
Sbjct: 55  VYSWGRGKEGQLGVPEKMLF----STKPNLIKTLLHERVVKVACGNFHSLALTDQGRVYE 110

Query: 88  WGRNNEVQLGRGALESR------ATWNDPKRVEGLDQVNVCAAFASG---VVSSAIG--- 135
           WG+ +++   +  LE+          + PK    ++  N  + + +G   +  S  G   
Sbjct: 111 WGQLHKIDDSKTGLEATNGLLEMPGMSKPKYQSIIE--NSVSQYLNGEKEIYDSTSGNND 168

Query: 136 DDGSLWVWGKSKRGQLGLGKDITEAIVPSRVE-ALAGEKIVKVSFGWGHALAQTEDGKLF 194
           DD       +SK   +G   D  +   P +V+  LA E+++ +S GW  + A T+ GK+F
Sbjct: 169 DDDEASTSEQSKGKHIGKIIDYNQT-TPIQVQGLLANEEVIDISAGWAFSAAVTKSGKIF 227

Query: 195 GWGYSADGRIGNLGKALESSP------LDSNIDRSSESDQEISSSTIEKAQKLVSEGM-- 246
            WG++  G++G   +   SSP      LD  I   S   Q I + T  +   L + G+  
Sbjct: 228 TWGFNEKGQLGLKHRWFNSSPQLVKTLLDVKIVSVSCGRQHIGAVT--EDGDLYTWGLGV 285

Query: 247 --------EKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLG- 297
                    K    P     F + G++V  ++CG + ++VLGRN +L + G   Y QLG 
Sbjct: 286 FGQLGHSNVKSYLHPKKVAAFSLNGIQVSQVSCGSNFTMVLGRNQILYAFGHGEYAQLGA 345

Query: 298 -REKQDMGMFPVDINFHPVS--------------ISSGLGHSLAICEVRSSNVTGGARGI 342
             E Q + M   D +F   S              ++ G  H+LA+ E            +
Sbjct: 346 TEETQHLDMGSRDNHFKYSSPKVVEALEDKKIKYVTCGHLHTLALTE---------DNEV 396

Query: 343 VSWGWNRSSQLGRMGP--DNVPLVVEGLEGE 371
             WGW  S  LG        VP +V  + GE
Sbjct: 397 YVWGWGSSGCLGLNSKRFQLVPQLVTSISGE 427



 Score = 64.3 bits (155), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 72/279 (25%), Positives = 131/279 (46%), Gaps = 39/279 (13%)

Query: 84  AVWAWGRNNEVQLGRGALESRATWNDPKRVEGLD---QVNVCAAFASGVVSSAIGDDGSL 140
           +V + G N   QLG   +E+     +PK +E L     V+  +  A  +  S  GD   +
Sbjct: 2   SVISVGNNKNGQLG---IENIKEHLEPKVLESLKGKVIVSCSSGEAHNICVSRFGD---V 55

Query: 141 WVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSA 200
           + WG+ K GQLG+ + +  +  P+ ++ L  E++VKV+ G  H+LA T+ G+++ WG   
Sbjct: 56  YSWGRGKEGQLGVPEKMLFSTKPNLIKTLLHERVVKVACGNFHSLALTDQGRVYEWGQLH 115

Query: 201 ---DGRIG-----------NLGKALESSPLDSNIDRSSESDQEISSSTI---EKAQKLVS 243
              D + G            + K    S +++++ +    ++EI  ST    +   +  +
Sbjct: 116 KIDDSKTGLEATNGLLEMPGMSKPKYQSIIENSVSQYLNGEKEIYDSTSGNNDDDDEAST 175

Query: 244 EGMEKEKYMPIIWE-----PFLVEGV----EVVDIACGFDHSLVLGRNGVLLSCGSNVYG 294
               K K++  I +     P  V+G+    EV+DI+ G+  S  + ++G + + G N  G
Sbjct: 176 SEQSKGKHIGKIIDYNQTTPIQVQGLLANEEVIDISAGWAFSAAVTKSGKIFTWGFNEKG 235

Query: 295 QLGREKQDMGMFP----VDINFHPVSISSGLGHSLAICE 329
           QLG + +     P      ++   VS+S G  H  A+ E
Sbjct: 236 QLGLKHRWFNSSPQLVKTLLDVKIVSVSCGRQHIGAVTE 274


>gi|163847891|ref|YP_001635935.1| chromosome condensation regulator RCC1 [Chloroflexus aurantiacus
           J-10-fl]
 gi|222525767|ref|YP_002570238.1| chromosome condensation regulator RCC1 [Chloroflexus sp. Y-400-fl]
 gi|163669180|gb|ABY35546.1| regulator of chromosome condensation RCC1 [Chloroflexus aurantiacus
           J-10-fl]
 gi|222449646|gb|ACM53912.1| regulator of chromosome condensation RCC1 [Chloroflexus sp.
           Y-400-fl]
          Length = 790

 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 95/324 (29%), Positives = 147/324 (45%), Gaps = 32/324 (9%)

Query: 62  LPS--DVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQV 119
           LPS  ++T+++ G YH+ A+T  G V  WG N+  QLG G +  R   N P  V GL+  
Sbjct: 63  LPSLRNITAIATGRYHTCALTTGGGVKCWGDNSSGQLGDGTMNDR---NTPVDVVGLES- 118

Query: 120 NVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSF 179
            V A  A G  + A+  +G +  WG +  GQLG    I  +     VE   G  +  ++ 
Sbjct: 119 GVAAIAAGGSHTCALTTNGGVKCWGANVSGQLGNETQIPYSAPVDVVE--LGRGVFDITA 176

Query: 180 GWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLD-----SNIDRSSESDQEISSST 234
           GW H  A T  G +  WG ++ G++G+      ++P+D     S +   +  +    + T
Sbjct: 177 GWEHTCALTTGGGVKCWGDNSSGQLGDGTTNDRNTPVDVAGLESGVAAIAAGEGHTCALT 236

Query: 235 IEKAQKLVSEGMEKEKYMPIIWE---PFLVEGVE--VVDIACGFDHSLVLGRNGVLLSCG 289
                K   + +E +     I+    P  V G+E  V  IA G++H+  L   G +   G
Sbjct: 237 TSGGVKCWGDNLEGQLGGGTIYSHITPVDVAGLESDVAAIAVGWEHTCALTTVGGVRCWG 296

Query: 290 SNVYGQLGREKQDMGMFPVDI---NFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWG 346
           +N  GQLG         PV +        +I++G GH+ A+        TGG  G+  WG
Sbjct: 297 NNSSGQLGDGTMTERNVPVGVIGLESGVTAITAGGGHTCAL-------TTGG--GVKCWG 347

Query: 347 WNRSSQLGRMGPDN--VPLVVEGL 368
            N   QLG +      +P+ V GL
Sbjct: 348 NNFYGQLGNVTAHQPGIPVDVAGL 371



 Score = 92.0 bits (227), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 95/339 (28%), Positives = 143/339 (42%), Gaps = 49/339 (14%)

Query: 56  PTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEG 115
           P  V GL SDV +++AG  H+ A+T +G V  WGRN   QLG G +  R   N P  V G
Sbjct: 416 PVDVSGLESDVVTITAGGAHTCALTTSGGVKCWGRNFNFQLGDGTMIDR---NTPVDVIG 472

Query: 116 LDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIV 175
           L    V A  A G  + A+     +  WG +  GQLG G  +     P  V  L G+ + 
Sbjct: 473 LGS-RVTAITAGGNHTCALTTSDGVKCWGSNLYGQLGHGT-MNFYGTPVDVIGLNGD-VT 529

Query: 176 KVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTI 235
            ++ GW H  A   DG +  WG +  G++G+  ++  S P+D  +         I++   
Sbjct: 530 AIAAGWWHTCALMTDGGVKCWGANDSGQLGDGTRSDRSIPVD--VSGLGSGVAAITAGLF 587

Query: 236 EKAQKLVSEGME---------------KEKYMPI----IWEPFLVEGVEVVDIACGFDHS 276
                  S G++                + Y+P+    +W         V  I  G  H+
Sbjct: 588 HTCALTTSGGVKCWGSNSSWQLGNITVGQPYIPVDVFGLWS-------GVTAITAGLHHT 640

Query: 277 LVLGRNGVLLSC-GSNVYGQLGREKQDMGMFP---VDINFHPVSISSGLGHSLAICEVRS 332
             L      + C G N  GQLG    ++  FP   + +     +I++G  H+ A+     
Sbjct: 641 CALTTGSAQVQCWGGNYDGQLGDGTTNLRRFPQTVIGLEGSETAIAAGGAHTCAL----- 695

Query: 333 SNVTGGARGIVSWGWNRSSQL--GRMGPDNVPLVVEGLE 369
             V+GG +    WG N   QL  G M   + P+ V  LE
Sbjct: 696 -TVSGGMK---CWGDNFYGQLGDGSMHDRSTPVDVIRLE 730



 Score = 89.4 bits (220), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 108/364 (29%), Positives = 155/364 (42%), Gaps = 39/364 (10%)

Query: 25  SGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGA 84
           +G  V  +GD S G LG  T+      D   P  V GL S V +++AG  H+ A+T +G 
Sbjct: 186 TGGGVKCWGDNSSGQLGDGTT-----NDRNTPVDVAGLESGVAAIAAGEGHTCALTTSGG 240

Query: 85  VWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWG 144
           V  WG N E QLG G + S  T   P  V GL+  +V A       + A+   G +  WG
Sbjct: 241 VKCWGDNLEGQLGGGTIYSHIT---PVDVAGLES-DVAAIAVGWEHTCALTTVGGVRCWG 296

Query: 145 KSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRI 204
            +  GQLG G  +TE  VP  V  L    +  ++ G GH  A T  G +  WG +  G++
Sbjct: 297 NNSSGQLGDGT-MTERNVPVGVIGLE-SGVTAITAGGGHTCALTTGGGVKCWGNNFYGQL 354

Query: 205 GNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIW-------- 256
           GN+       P+D  +         I++          S G++   Y   +         
Sbjct: 355 GNVTAHQPGIPVD--VAGLGIGVVAIAAGGAHTCALTTSGGVKCWGYNYDVQLGDGTTTA 412

Query: 257 --EPFLVEGVE--VVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDI-- 310
              P  V G+E  VV I  G  H+  L  +G +   G N   QLG         PVD+  
Sbjct: 413 RSTPVDVSGLESDVVTITAGGAHTCALTTSGGVKCWGRNFNFQLGDGTMIDRNTPVDVIG 472

Query: 311 -NFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGR--MGPDNVPLVVEG 367
                 +I++G  H+   C + +S+      G+  WG N   QLG   M     P+ V G
Sbjct: 473 LGSRVTAITAGGNHT---CALTTSD------GVKCWGSNLYGQLGHGTMNFYGTPVDVIG 523

Query: 368 LEGE 371
           L G+
Sbjct: 524 LNGD 527



 Score = 88.6 bits (218), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 110/405 (27%), Positives = 167/405 (41%), Gaps = 84/405 (20%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYE---PTRVPGLPSDVTSVSAGHYHSLAVTNNGAV 85
           V  +GD  +G LG        GG  Y    P  V GL SDV +++ G  H+ A+T  G V
Sbjct: 241 VKCWGDNLEGQLG--------GGTIYSHITPVDVAGLESDVAAIAVGWEHTCALTTVGGV 292

Query: 86  WAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGK 145
             WG N+  QLG G +  R   N P  V GL+   V A  A G  + A+   G +  WG 
Sbjct: 293 RCWGNNSSGQLGDGTMTER---NVPVGVIGLES-GVTAITAGGGHTCALTTGGGVKCWGN 348

Query: 146 SKRGQLGLGKDIT--EAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGR 203
           +  GQLG   ++T  +  +P  V  L G  +V ++ G  H  A T  G +  WGY+ D +
Sbjct: 349 NFYGQLG---NVTAHQPGIPVDVAGL-GIGVVAIAAGGAHTCALTTSGGVKCWGYNYDVQ 404

Query: 204 IGNLGKALESSPLD-----SNIDRSSESDQEISSSTIEKAQKL--------VSEGMEKEK 250
           +G+      S+P+D     S++   +       + T     K         + +G   ++
Sbjct: 405 LGDGTTTARSTPVDVSGLESDVVTITAGGAHTCALTTSGGVKCWGRNFNFQLGDGTMIDR 464

Query: 251 YMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDI 310
             P+     +  G  V  I  G +H+  L  +  +   GSN+YGQLG    +    PVD+
Sbjct: 465 NTPV---DVIGLGSRVTAITAGGNHTCALTTSDGVKCWGSNLYGQLGHGTMNFYGTPVDV 521

Query: 311 ---NFHPVSISSGLGHSLAICE------------------VRS---------------SN 334
              N    +I++G  H+ A+                     RS               + 
Sbjct: 522 IGLNGDVTAIAAGWWHTCALMTDGGVKCWGANDSGQLGDGTRSDRSIPVDVSGLGSGVAA 581

Query: 335 VTGG---------ARGIVSWGWNRSSQLGRM--GPDNVPLVVEGL 368
           +T G         + G+  WG N S QLG +  G   +P+ V GL
Sbjct: 582 ITAGLFHTCALTTSGGVKCWGSNSSWQLGNITVGQPYIPVDVFGL 626



 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 105/367 (28%), Positives = 153/367 (41%), Gaps = 45/367 (12%)

Query: 25  SGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGA 84
           +G  V  +GD S G LG      G   D   P  V GL S V +++AG  H+ A+T NG 
Sbjct: 84  TGGGVKCWGDNSSGQLG-----DGTMNDRNTPVDVVGLESGVAAIAAGGSHTCALTTNGG 138

Query: 85  VWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQ--VNVCAAFASGVVSSAIGDDGSLWV 142
           V  WG N   QLG    E++  ++ P  V  L +   ++ A +     + A+   G +  
Sbjct: 139 VKCWGANVSGQLGN---ETQIPYSAPVDVVELGRGVFDITAGWEH---TCALTTGGGVKC 192

Query: 143 WGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADG 202
           WG +  GQLG G    +   P  V  L    +  ++ G GH  A T  G +  WG + +G
Sbjct: 193 WGDNSSGQLGDGT-TNDRNTPVDVAGLE-SGVAAIAAGEGHTCALTTSGGVKCWGDNLEG 250

Query: 203 RIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLV-----------SEGMEKEKY 251
           ++G        +P+D       ESD    +   E    L            S G   +  
Sbjct: 251 QLGGGTIYSHITPVDV---AGLESDVAAIAVGWEHTCALTTVGGVRCWGNNSSGQLGDGT 307

Query: 252 MPIIWEPFLVEGVE--VVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVD 309
           M     P  V G+E  V  I  G  H+  L   G +   G+N YGQLG         PVD
Sbjct: 308 MTERNVPVGVIGLESGVTAITAGGGHTCALTTGGGVKCWGNNFYGQLGNVTAHQPGIPVD 367

Query: 310 I---NFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQL--GRMGPDNVPLV 364
           +       V+I++G  H+   C + +S       G+  WG+N   QL  G     + P+ 
Sbjct: 368 VAGLGIGVVAIAAGGAHT---CALTTSG------GVKCWGYNYDVQLGDGTTTARSTPVD 418

Query: 365 VEGLEGE 371
           V GLE +
Sbjct: 419 VSGLESD 425



 Score = 67.8 bits (164), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 72/268 (26%), Positives = 113/268 (42%), Gaps = 21/268 (7%)

Query: 56  PTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEG 115
           P  V GL  DVT+++AG +H+ A+  +G V  WG N+  QLG G    R+    P  V G
Sbjct: 518 PVDVIGLNGDVTAIAAGWWHTCALMTDGGVKCWGANDSGQLGDGTRSDRSI---PVDVSG 574

Query: 116 LDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIV 175
           L    V A  A    + A+   G +  WG +   QLG    + +  +P  V  L    + 
Sbjct: 575 LGS-GVAAITAGLFHTCALTTSGGVKCWGSNSSWQLG-NITVGQPYIPVDVFGLW-SGVT 631

Query: 176 KVSFGWGHALAQTE-DGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSST 234
            ++ G  H  A T    ++  WG + DG++G+    L   P    +     S+  I++  
Sbjct: 632 AITAGLHHTCALTTGSAQVQCWGGNYDGQLGDGTTNLRRFP--QTVIGLEGSETAIAAGG 689

Query: 235 IEKAQKLVSEGME--KEKYMPIIWEPFLVEGVEVVD----------IACGFDHSLVLGRN 282
                  VS GM+   + +   + +  + +    VD          IA GF H+  L  +
Sbjct: 690 AHTCALTVSGGMKCWGDNFYGQLGDGSMHDRSTPVDVIRLESNVDAIAAGFFHTCALTTD 749

Query: 283 GVLLSCGSNVYGQLGREKQDMGMFPVDI 310
             +   G N Y QLG  +      PVD+
Sbjct: 750 KGVKCWGDNFYAQLGDGRPLWRSVPVDV 777



 Score = 55.5 bits (132), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 58/197 (29%), Positives = 86/197 (43%), Gaps = 14/197 (7%)

Query: 52  DAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPK 111
           D   P  V GL S V +++AG +H+ A+T +G V  WG N+  QLG   +        P 
Sbjct: 565 DRSIPVDVSGLGSGVAAITAGLFHTCALTTSGGVKCWGSNSSWQLGNITVGQPYI---PV 621

Query: 112 RVEGLDQVNVCAAFASGVVSSAIGDDGSLWV--WGKSKRGQLGLGKDITEAIVPSRVEAL 169
            V GL   +   A  +G+  +     GS  V  WG +  GQLG G        P  V  L
Sbjct: 622 DVFGL--WSGVTAITAGLHHTCALTTGSAQVQCWGGNYDGQLGDGTTNLRRF-PQTVIGL 678

Query: 170 AGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLD-----SNIDRSS 224
            G +   ++ G  H  A T  G +  WG +  G++G+      S+P+D     SN+D  +
Sbjct: 679 EGSE-TAIAAGGAHTCALTVSGGMKCWGDNFYGQLGDGSMHDRSTPVDVIRLESNVDAIA 737

Query: 225 ESDQEISSSTIEKAQKL 241
                  + T +K  K 
Sbjct: 738 AGFFHTCALTTDKGVKC 754



 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 37/114 (32%), Positives = 57/114 (50%), Gaps = 4/114 (3%)

Query: 56  PTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEG 115
           P  V GL    T+++AG  H+ A+T +G +  WG N   QLG G++  R+T  D  R+E 
Sbjct: 672 PQTVIGLEGSETAIAAGGAHTCALTVSGGMKCWGDNFYGQLGDGSMHDRSTPVDVIRLES 731

Query: 116 LDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEAL 169
               NV A  A    + A+  D  +  WG +   QLG G+ +  ++    V+ L
Sbjct: 732 ----NVDAIAAGFFHTCALTTDKGVKCWGDNFYAQLGDGRPLWRSVPVDVVDRL 781



 Score = 38.9 bits (89), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 37/70 (52%), Gaps = 5/70 (7%)

Query: 52  DAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPK 111
           D   P  V  L S+V +++AG +H+ A+T +  V  WG N   QLG G    R  W    
Sbjct: 719 DRSTPVDVIRLESNVDAIAAGFFHTCALTTDKGVKCWGDNFYAQLGDG----RPLWRSVP 774

Query: 112 RVEGLDQVNV 121
            V+ +D++NV
Sbjct: 775 -VDVVDRLNV 783


>gi|268569112|ref|XP_002640436.1| Hypothetical protein CBG08488 [Caenorhabditis briggsae]
          Length = 985

 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 95/311 (30%), Positives = 150/311 (48%), Gaps = 33/311 (10%)

Query: 61  GLPSD-----VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGAL-ESRATWNDPKRVE 114
           G P+D     V +V+ G  H++ +T +  +W+ G N + QLGRG   E   +        
Sbjct: 2   GAPNDADGTAVKAVACGEQHTIFLTKDRKMWSVGSNVDGQLGRGKRSEGSFSIYPVSLTS 61

Query: 115 GLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKI 174
           G+  V + A  A    S A+ DDG ++ WG ++ GQLG+   IT   +P R+  L   ++
Sbjct: 62  GVGIVQIAAGRAH---SLAVADDGRVFAWGSNEHGQLGMENTITWQEMPKRINQL--NEV 116

Query: 175 VKVSFGWGHALAQTEDGKLFGWGYSADGRI---GNLGKALESSPLDSNIDRSSESDQEIS 231
           V+V+ G  H +A TEDG+++ WG  ADGR      L + L + P+   ++  +     IS
Sbjct: 117 VQVASGSDHCIALTEDGRVYVWGEQADGRCIHHPELVEHLNAIPI-VRVEAGARHCVAIS 175

Query: 232 SS--TIEKAQKLVSE-GMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSC 288
           +S       Q    E GM+  +    +     ++G+ VV+ ACG +H+++L   G   S 
Sbjct: 176 ASGAVFTWGQNNSGELGMDDFRPQTSVHHVTQMDGLGVVEAACGDNHTILLTHCGRTFSF 235

Query: 289 GSNVYGQLG----REKQDMGMFPVD-INFHPVSISSGLGHSLAICEVRSSNVTGGARGIV 343
           GS+  GQ G     EK+       D I  H   I++G  H++AI  +R S          
Sbjct: 236 GSDALGQCGFGKKLEKRPNPTAVSDLIGSHVTRIAAGACHTIAI--IRGSP--------Y 285

Query: 344 SWGWNRSSQLG 354
            +G N S QLG
Sbjct: 286 PFGLNSSGQLG 296


>gi|348688336|gb|EGZ28150.1| hypothetical protein PHYSODRAFT_321832 [Phytophthora sojae]
          Length = 423

 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 104/375 (27%), Positives = 170/375 (45%), Gaps = 75/375 (20%)

Query: 24  ASGTAVVSFGDGSQGALGL-----PT-SLTGVGGDAYEPTRVPGL-PSDVTSVSAGHYHS 76
           A+  AVV+FG    G LG      PT ++  V    + P ++ GL   ++ +VS G  H+
Sbjct: 7   ATECAVVAFGCNDDGQLGTGAKRRPTLAIDDVSASNF-PKQLGGLLGEEIVAVSCGSRHT 65

Query: 77  LAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFAS--GVVSSAI 134
           +A+T +GAV++WG  +  QLG G L+S    N P+++   +Q  +   + S  G  S+A+
Sbjct: 66  MALTASGAVYSWGWGSMGQLGHGDLKS---INVPQKIAFFEQEGLKVDYVSCGGCHSAAV 122

Query: 135 GDDGSLWVWGKSKRGQLGLGKDITEA-----IVPSRVEALAGEKIVKVSFGWGHALAQTE 189
            +DG+L++WG++  GQLGL K+   A     +    +E +A E +VKVS G  H  A T 
Sbjct: 123 TNDGTLYMWGETHWGQLGLPKEFEAAHESFPVKCPLLEGVADESVVKVSCGGTHTAALTN 182

Query: 190 DGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKE 249
            G+++ WG    G++G +G A      D+ +   S                         
Sbjct: 183 LGRVYVWGRGDSGQLG-IGSAWLKDTDDNGLLGVS------------------------- 216

Query: 250 KYMPIIWEPFLVEGV---EVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMF 306
                   P LVEG    +VV +ACG  HS  +   G +   G   YG LG  +      
Sbjct: 217 -------RPHLVEGFNGEKVVQVACGAFHSAAVTEQGHVYIWGKEDYGMLGVGQTSDQQT 269

Query: 307 PVDINFH----PVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPDNV- 361
           P  + F      + +S G  H++ +   +S +     RG          + GR+G  +  
Sbjct: 270 PKRVEFFDDIPALRVSCGGWHTMVV--AKSGDCYAFGRG----------EYGRLGLGDTK 317

Query: 362 ----PLVVEGLEGES 372
               P +V+ L+G++
Sbjct: 318 SRTRPHLVKALKGQT 332



 Score = 75.5 bits (184), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 46/140 (32%), Positives = 68/140 (48%), Gaps = 4/140 (2%)

Query: 66  VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAF 125
           V  V+ G +HS AVT  G V+ WG+ +   LG G    + T   PKRVE  D +      
Sbjct: 229 VVQVACGAFHSAAVTEQGHVYIWGKEDYGMLGVGQTSDQQT---PKRVEFFDDIPALRVS 285

Query: 126 ASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHAL 185
             G  +  +   G  + +G+ + G+LGLG D      P  V+AL G+ +++ + G  H L
Sbjct: 286 CGGWHTMVVAKSGDCYAFGRGEYGRLGLG-DTKSRTRPHLVKALKGQTVIQAACGGSHTL 344

Query: 186 AQTEDGKLFGWGYSADGRIG 205
             T DG  +  G    GR+G
Sbjct: 345 FVTSDGIAYVAGRPDHGRLG 364



 Score = 52.8 bits (125), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 46/151 (30%), Positives = 73/151 (48%), Gaps = 10/151 (6%)

Query: 46  LTGVG--GDAYEPTRVPGLPSDVTS--VSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGAL 101
           + GVG   D   P RV     D+ +  VS G +H++ V  +G  +A+GR    +LG G  
Sbjct: 258 MLGVGQTSDQQTPKRVEFF-DDIPALRVSCGGWHTMVVAKSGDCYAFGRGEYGRLGLGDT 316

Query: 102 ESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAI 161
           +SR     P  V+ L    V  A   G  +  +  DG  +V G+   G+LG+  D+    
Sbjct: 317 KSR---TRPHLVKALKGQTVIQAACGGSHTLFVTSDGIAYVAGRPDHGRLGM-TDMKPLS 372

Query: 162 VPSRVEALAGEKIVKVSFGWGHALAQTEDGK 192
           VP+R++ L    + +VS G  H++A T   +
Sbjct: 373 VPTRLD-LGPIPVRQVSAGGAHSMALTHSSR 402


>gi|312373149|gb|EFR20956.1| hypothetical protein AND_18231 [Anopheles darlingi]
          Length = 1270

 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 64/246 (26%), Positives = 118/246 (47%), Gaps = 41/246 (16%)

Query: 65  DVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAA 124
           ++   + G  H+L +TN+G +++ G N+  QLG   +ES      P+ +  L+   +  A
Sbjct: 348 EIARAACGASHTLLLTNDGKMYSCGNNDHGQLGHD-VESLPN-KRPQLLTALENYIITQA 405

Query: 125 FASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHA 184
                 S A+ + G ++ WG +  GQLG   D T  I+P  + ++A +++V+++ G  H 
Sbjct: 406 CCGTAHSLALTNWGQVYSWGSNAVGQLGQETDTTRQIIPRLIRSIAAKQVVQIAAGHYHC 465

Query: 185 LAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSE 244
           LA T  G+L+ WG +A G++G LG                 +++++S+ T+ ++      
Sbjct: 466 LALTNSGELYAWGSNAYGQLG-LGM----------------TNEKVSTPTLVQS------ 502

Query: 245 GMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMG 304
                           + GV +  IACG +HS  + ++G +   G N +GQLG    +  
Sbjct: 503 ----------------LAGVPIAFIACGGNHSFAVSKSGAIFGWGKNTFGQLGLNDLNSR 546

Query: 305 MFPVDI 310
            FP  +
Sbjct: 547 QFPTQL 552



 Score = 88.2 bits (217), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 81/307 (26%), Positives = 128/307 (41%), Gaps = 54/307 (17%)

Query: 66  VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAF 125
           +T    G  HSLA+TN G V++WG N   QLG+    +R     P+ +  +    V    
Sbjct: 402 ITQACCGTAHSLALTNWGQVYSWGSNAVGQLGQETDTTRQII--PRLIRSIAAKQVVQIA 459

Query: 126 ASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHAL 185
           A      A+ + G L+ WG +  GQLGLG    +   P+ V++LAG  I  ++ G  H+ 
Sbjct: 460 AGHYHCLALTNSGELYAWGSNAYGQLGLGMTNEKVSTPTLVQSLAGVPIAFIACGGNHSF 519

Query: 186 AQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEG 245
           A ++ G +FGWG +  G++G     L S    + +                  + L S G
Sbjct: 520 AVSKSGAIFGWGKNTFGQLG--LNDLNSRQFPTQL------------------RTLRSLG 559

Query: 246 MEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGM 305
           +                      ++CG D S+ L   G + +CG+  +GQLG    +  +
Sbjct: 560 VRY--------------------VSCGDDFSVFLTAGGGVFTCGAGTFGQLGHGSCNNEI 599

Query: 306 FPVDINFHPV-----SISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPDN 360
            P  + F  +      I+ G  H+LA    R      G  G+   G      +G +G  N
Sbjct: 600 LPRMV-FELMGSKITQIACGRRHTLAFVPSRGKIYGFGLSGVGQLG------IGIVGNYN 652

Query: 361 VPLVVEG 367
            P +V G
Sbjct: 653 TPQIVRG 659



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 62/203 (30%), Positives = 88/203 (43%), Gaps = 21/203 (10%)

Query: 20  FMRSASGTAVVSFGDGSQGALGLPTS--LTGVGGDAY-------------EPTRVPGLPS 64
            +RS +   VV    G    L L  S  L   G +AY              PT V  L  
Sbjct: 446 LIRSIAAKQVVQIAAGHYHCLALTNSGELYAWGSNAYGQLGLGMTNEKVSTPTLVQSLAG 505

Query: 65  -DVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCA 123
             +  ++ G  HS AV+ +GA++ WG+N   QLG   L SR     P ++  L  + V  
Sbjct: 506 VPIAFIACGGNHSFAVSKSGAIFGWGKNTFGQLGLNDLNSRQF---PTQLRTLRSLGVRY 562

Query: 124 AFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGH 183
                  S  +   G ++  G    GQLG G    E I+P  V  L G KI +++ G  H
Sbjct: 563 VSCGDDFSVFLTAGGGVFTCGAGTFGQLGHGSCNNE-ILPRMVFELMGSKITQIACGRRH 621

Query: 184 ALAQTED-GKLFGWGYSADGRIG 205
            LA     GK++G+G S  G++G
Sbjct: 622 TLAFVPSRGKIYGFGLSGVGQLG 644



 Score = 45.8 bits (107), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 56/219 (25%), Positives = 86/219 (39%), Gaps = 58/219 (26%)

Query: 161 IVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNI 220
           +VP +++ +  ++I + + G  H L  T DGK++  G   +   G LG  +ES P     
Sbjct: 336 MVPRKMDWMHAKEIARAACGASHTLLLTNDGKMYSCG---NNDHGQLGHDVESLP----- 387

Query: 221 DRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLG 280
                           K  +L++                 +E   +    CG  HSL L 
Sbjct: 388 ---------------NKRPQLLTA----------------LENYIITQACCGTAHSLALT 416

Query: 281 RNGVLLSCGSNVYGQLGREKQDM-GMFPVDINF----HPVSISSGLGHSLAICEVRSSNV 335
             G + S GSN  GQLG+E      + P  I        V I++G  H LA+        
Sbjct: 417 NWGQVYSWGSNAVGQLGQETDTTRQIIPRLIRSIAAKQVVQIAAGHYHCLAL-------- 468

Query: 336 TGGARGIVSWGWNRSSQLGRMGPDN----VPLVVEGLEG 370
              +  + +WG N   QLG +G  N     P +V+ L G
Sbjct: 469 -TNSGELYAWGSNAYGQLG-LGMTNEKVSTPTLVQSLAG 505


>gi|297673957|ref|XP_002815007.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC3 isoform 2
           [Pongo abelii]
          Length = 1050

 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 88/324 (27%), Positives = 142/324 (43%), Gaps = 54/324 (16%)

Query: 28  AVVSFGDGSQGALGLPTS-LTGVGGDAYEPTRVPGLPSD-VTSVSAGHYHSLAVTNNGAV 85
           +V    DG     GL T    G   +  +P ++  L    +  V+ G  HSLA+++ G +
Sbjct: 46  SVFLLEDGEVYTCGLNTKGQLGHEREGNKPEQIGALADQHIIHVACGESHSLALSDRGQL 105

Query: 86  WAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGK 145
           ++WG  ++ QLG    E       P+ ++ L+Q  +           A+  DG  + WGK
Sbjct: 106 FSWGAGSDGQLGLMTTEDSVAV--PRLIQKLNQQTILQVSCGNWHCLALASDGQFFTWGK 163

Query: 146 SKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIG 205
           +  GQLGLGK+      P RV +L G  + +V+ G  H+ A +  G +FGWG +  G++G
Sbjct: 164 NSHGQLGLGKEFPSQASPQRVRSLEGIPLAQVAAGGAHSFALSLSGAVFGWGMNNAGQLG 223

Query: 206 NLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVE 265
                            S E D+E S   ++                       L+   +
Sbjct: 224 ----------------LSDEKDRE-SPCHVK-----------------------LLRTQK 243

Query: 266 VVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDI----NFHPVSISSGL 321
           VV I+CG +H+ VL ++G + + G+  YGQLG +  +  + P  +          I+ G 
Sbjct: 244 VVYISCGEEHTAVLTKSGGVFTFGAGSYGQLGHDSMNDEVNPRRVLELMGSEVTQIACGR 303

Query: 322 GHSLAICEVRSSNVT----GGARG 341
            H+LA   V SS +      GARG
Sbjct: 304 QHTLAF--VPSSGLIYAFGCGARG 325



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 37/115 (32%), Positives = 60/115 (52%), Gaps = 20/115 (17%)

Query: 266 VVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDI----NFHPVSISSGL 321
           V ++ACG +HS+ L  +G + +CG N  GQLG E++  G  P  I    + H + ++ G 
Sbjct: 36  VKEVACGGNHSVFLLEDGEVYTCGLNTKGQLGHERE--GNKPEQIGALADQHIIHVACGE 93

Query: 322 GHSLAICEVRSSNVTGGARG-IVSWGWNRSSQLGRMGPDN---VPLVVEGLEGES 372
            HSLA+ +          RG + SWG     QLG M  ++   VP +++ L  ++
Sbjct: 94  SHSLALSD----------RGQLFSWGAGSDGQLGLMTTEDSVAVPRLIQKLNQQT 138


>gi|55727310|emb|CAH90411.1| hypothetical protein [Pongo abelii]
          Length = 975

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 79/284 (27%), Positives = 128/284 (45%), Gaps = 52/284 (18%)

Query: 66  VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAF 125
           +  V+ G  HSLA+++ G +++WG  ++ QLG    E       P+ ++ L+Q  +    
Sbjct: 86  IIHVACGESHSLALSDRGQLFSWGAGSDGQLGLMTTEDSVA--VPRLIQKLNQQTILQVS 143

Query: 126 ASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHAL 185
                  A+  DG  + WGK+  GQLGLGK+      P RV +L G  + +V+ G  H+ 
Sbjct: 144 CGNWHCLALASDGQFFTWGKNSHGQLGLGKEFPSQASPQRVRSLEGIPLAQVAAGGAHSF 203

Query: 186 AQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEG 245
           A +  G +FGWG +  G++G                 S E D+E S   ++         
Sbjct: 204 ALSLSGAVFGWGMNNAGQLG----------------LSDEKDRE-SPCHVK--------- 237

Query: 246 MEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGM 305
                         L+   +VV I+CG +H+ VL ++G + + G+  YGQLG +  +  +
Sbjct: 238 --------------LLRTQKVVYISCGEEHTAVLTKSGGVFTFGAGSYGQLGHDSMNDEV 283

Query: 306 FPVDI----NFHPVSISSGLGHSLAICEVRSSNVT----GGARG 341
            P  +          I+ G  H+LA   V SS +      GARG
Sbjct: 284 NPRRVLELMGSEVTQIACGRQHTLAF--VPSSGLIYAFGCGARG 325



 Score = 47.0 bits (110), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 36/115 (31%), Positives = 59/115 (51%), Gaps = 20/115 (17%)

Query: 266 VVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDI----NFHPVSISSGL 321
           V ++ACG +HS+ L  +G + +CG N  GQLG  ++  G  P  I    + H + ++ G 
Sbjct: 36  VKEVACGGNHSVFLLEDGEVYTCGLNTKGQLGHVRE--GNKPEQIGALADQHIIHVACGE 93

Query: 322 GHSLAICEVRSSNVTGGARG-IVSWGWNRSSQLGRMGPDN---VPLVVEGLEGES 372
            HSLA+ +          RG + SWG     QLG M  ++   VP +++ L  ++
Sbjct: 94  SHSLALSD----------RGQLFSWGAGSDGQLGLMTTEDSVAVPRLIQKLNQQT 138


>gi|330837467|ref|YP_004412108.1| chromosome condensation regulator RCC1 [Sphaerochaeta coccoides DSM
           17374]
 gi|329749370|gb|AEC02726.1| regulator of chromosome condensation RCC1 [Sphaerochaeta coccoides
           DSM 17374]
          Length = 781

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 78/257 (30%), Positives = 125/257 (48%), Gaps = 20/257 (7%)

Query: 56  PTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEG 115
           P +V  + SDV +VS G  +++ V  +G +WA G+N   QLG G  + R   N P +V+G
Sbjct: 512 PVQVSSMGSDVAAVSTGESYTMIVKKDGTLWATGQNTAGQLGDGTTDDR---NKPVQVKG 568

Query: 116 LDQV----NVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAG 171
           L+ V    +V   FA G  +  +  +G+LW  G +  GQL  G   T    P +V+  +G
Sbjct: 569 LNGVGFMTDVEDVFAGGFHTMILKKNGTLWATGFNYFGQLCDGT-TTIRTTPVQVQDSSG 627

Query: 172 ----EKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESD 227
                 +  VS GW H +   +DG L+  G +  G++G   K   S+P   + + +S S 
Sbjct: 628 VGFMTDVATVSAGWAHTMILKKDGTLWAIGKNEQGQLGVSDKINRSTPAQVSSNVASVSA 687

Query: 228 QEISSSTIEKAQKLVSEGMEKEKYMPI-----IWEPFLVE--GVEVVDIACGFDHSLVLG 280
            E  +  ++K   L + G      + +        P  V   G +V  ++ GF H+++L 
Sbjct: 688 GESYTMILKKDGTLWATGSNDSGRLGVGDNNDRSSPMQVSSMGSDVAAVSAGF-HTMILK 746

Query: 281 RNGVLLSCGSNVYGQLG 297
           +NG L + G N  GQLG
Sbjct: 747 KNGTLWATGYNFLGQLG 763



 Score = 79.0 bits (193), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 71/267 (26%), Positives = 120/267 (44%), Gaps = 47/267 (17%)

Query: 66  VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAF 125
           V SVSAG +H+L +  +G +WA G N   QLG G   +  + + P +V      +V A  
Sbjct: 420 VKSVSAGGFHTLILKMDGTLWATGNNEYGQLGVGTSGTVNSKSTPVQV----MTDVAAVS 475

Query: 126 ASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHAL 185
           A    +  + +DG+LW  G++K GQLG+G D T    P +V ++ G  +  VS G  + +
Sbjct: 476 AGWSHTMILKNDGTLWATGRNKVGQLGVG-DNTNRSTPVQVSSM-GSDVAAVSTGESYTM 533

Query: 186 AQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEG 245
              +DG L+  G +  G++G+                          +T ++ + +  +G
Sbjct: 534 IVKKDGTLWATGQNTAGQLGD-------------------------GTTDDRNKPVQVKG 568

Query: 246 MEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGM 305
           +    +M            +V D+  G  H+++L +NG L + G N +GQL      +  
Sbjct: 569 LNGVGFM-----------TDVEDVFAGGFHTMILKKNGTLWATGFNYFGQLCDGTTTIRT 617

Query: 306 FPVDINFHPVSISSGLGHSLAICEVRS 332
            PV      V  SSG+G    +  V +
Sbjct: 618 TPVQ-----VQDSSGVGFMTDVATVSA 639



 Score = 48.1 bits (113), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 38/124 (30%), Positives = 64/124 (51%), Gaps = 13/124 (10%)

Query: 31  SFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGR 90
           + G   QG LG+   +     +   P +V    S+V SVSAG  +++ +  +G +WA G 
Sbjct: 655 AIGKNEQGQLGVSDKI-----NRSTPAQVS---SNVASVSAGESYTMILKKDGTLWATGS 706

Query: 91  NNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQ 150
           N+  +LG G    R++   P +V  +   +  AA ++G  +  +  +G+LW  G +  GQ
Sbjct: 707 NDSGRLGVGDNNDRSS---PMQVSSMG--SDVAAVSAGFHTMILKKNGTLWATGYNFLGQ 761

Query: 151 LGLG 154
           LGLG
Sbjct: 762 LGLG 765



 Score = 39.7 bits (91), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 29/81 (35%), Positives = 41/81 (50%), Gaps = 6/81 (7%)

Query: 33  GDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNN 92
           G    G LG+     G   D   P +V  + SDV +VSAG +H++ +  NG +WA G N 
Sbjct: 705 GSNDSGRLGV-----GDNNDRSSPMQVSSMGSDVAAVSAG-FHTMILKKNGTLWATGYNF 758

Query: 93  EVQLGRGALESRATWNDPKRV 113
             QLG G   S    + P++V
Sbjct: 759 LGQLGLGDSGSGTDRSTPEQV 779


>gi|47085959|ref|NP_998341.1| protein RCC2 homolog [Danio rerio]
 gi|71152032|sp|Q6NYE2.1|RCC2_DANRE RecName: Full=Protein RCC2 homolog
 gi|42744570|gb|AAH66628.1| Zgc:77115 [Danio rerio]
          Length = 495

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 79/287 (27%), Positives = 131/287 (45%), Gaps = 23/287 (8%)

Query: 75  HSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAI 134
           HSL +T  G +W+WGRN++ QLG G  +       PK +EGL +  + AA      + A+
Sbjct: 134 HSLIITTEGKLWSWGRNDKGQLGHGDTKRLEA---PKLIEGLGEEVIVAAACGRNHTLAL 190

Query: 135 GDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLF 194
            ++G+++ +G++K GQLG G      + P+ ++   G+ IVKV+ G   ++     G L+
Sbjct: 191 TENGTVYTFGENKLGQLGQGNQTDAVLSPATIQ-YNGQPIVKVACGAEFSMIVDCKGNLY 249

Query: 195 GWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPI 254
            +G    G++G+            N D    +  +      E   + V+  +EK K   +
Sbjct: 250 SFGCPEYGQLGH------------NSDGKFIARAQRIEFDCELIPRRVAIFIEKTKDGQV 297

Query: 255 IWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFHP 314
           +  P +V      D+ACG +H+LVL     + S G   YG+LG  +Q   M P  +    
Sbjct: 298 LPVPNVV----ARDVACGANHTLVLDSQKRVFSWGFGGYGRLGHAEQKDEMVPRLVKLFD 353

Query: 315 VSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPDNV 361
                G G +   C  + S       G+  WG   +S+   M P  V
Sbjct: 354 F---PGRGATQIYCGYQCSFALSEMGGLFFWGVTNTSRESTMYPKAV 397



 Score = 52.8 bits (125), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 54/185 (29%), Positives = 79/185 (42%), Gaps = 29/185 (15%)

Query: 56  PTRVPGLPSDVTSVSA-GHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVE 114
           P  + GL  +V   +A G  H+LA+T NG V+ +G N   QLG+G            +  
Sbjct: 166 PKLIEGLGEEVIVAAACGRNHTLALTENGTVYTFGENKLGQLGQGNQTDAVLSPATIQYN 225

Query: 115 GLDQVNV-CAAFASGVVSSAIGDDGSLWVWGKSKRGQLGL---GKDITEA--------IV 162
           G   V V C A  S +V       G+L+ +G  + GQLG    GK I  A        ++
Sbjct: 226 GQPIVKVACGAEFSMIVDCK----GNLYSFGCPEYGQLGHNSDGKFIARAQRIEFDCELI 281

Query: 163 PSRV----------EALAGEKIV--KVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKA 210
           P RV          + L    +V   V+ G  H L      ++F WG+   GR+G+  + 
Sbjct: 282 PRRVAIFIEKTKDGQVLPVPNVVARDVACGANHTLVLDSQKRVFSWGFGGYGRLGHAEQK 341

Query: 211 LESSP 215
            E  P
Sbjct: 342 DEMVP 346


>gi|115378347|ref|ZP_01465512.1| BNR repeat domain protein [Stigmatella aurantiaca DW4/3-1]
 gi|310825395|ref|YP_003957753.1| bnr repeat domain-containing protein [Stigmatella aurantiaca
           DW4/3-1]
 gi|115364660|gb|EAU63730.1| BNR repeat domain protein [Stigmatella aurantiaca DW4/3-1]
 gi|309398467|gb|ADO75926.1| BNR repeat domain protein [Stigmatella aurantiaca DW4/3-1]
          Length = 382

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 97/313 (30%), Positives = 148/313 (47%), Gaps = 31/313 (9%)

Query: 54  YEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRV 113
           + P  VPGL SD+ SV+AG  HSLAV  +G +W WG N   QLG G   +RA    P +V
Sbjct: 73  FAPVPVPGL-SDIVSVAAGGAHSLAVRADGTLWTWGGNPYGQLGDGTTTARAL---PVQV 128

Query: 114 EGLDQVNVCAAFASGVVSS-AIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGE 172
            GL  V    A A+G+  S A+  DG++W WG ++ GQLG G   ++ + P  +  L+G 
Sbjct: 129 AGLSGVR---AVATGLGHSLALRADGTVWAWGLNQFGQLGDGT-TSQWLTPRPIPGLSG- 183

Query: 173 KIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLD-------SNIDRSSE 225
            +  V+ G  H+L   +D  ++ WG +  G +G+   +  + P         +++     
Sbjct: 184 -VRSVAAGGFHSLVVRDDDTVWAWGSNDYGELGDGSTSRRAVPRAIPGLRNVASVAGGCY 242

Query: 226 SDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVD-IACGFDHSLVLGRNGV 284
               + +     A  L S G   +        P  V G+  V  +A  F HSL L   G 
Sbjct: 243 HSLAVHADGTLSAWGLNSYGQLGDGTFSNRATPRPVPGLSGVRCVATSFFHSLALRAEGT 302

Query: 285 LLSCGSNVYGQLG---REKQDMGMFPVDINFHPVSISSGLGHSLAICEVRSSNVTGGARG 341
           + + G N YG+ G     +Q     PV      +S+++G  HSLA+    ++N T     
Sbjct: 303 VWAWGLNGYGEQGDGTASRQSPTPRPVPGLSGVLSVATGTFHSLAV----NTNGT----- 353

Query: 342 IVSWGWNRSSQLG 354
           + +WG N   QLG
Sbjct: 354 VSAWGHNGQGQLG 366



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 82/257 (31%), Positives = 112/257 (43%), Gaps = 54/257 (21%)

Query: 56  PTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEG 115
           P  +PGL S V SV+AG +HSL V ++  VWAWG N+  +LG G+   RA    P+ + G
Sbjct: 175 PRPIPGL-SGVRSVAAGGFHSLVVRDDDTVWAWGSNDYGELGDGSTSRRAV---PRAIPG 230

Query: 116 LDQVNVCAAFASGVVSS-AIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKI 174
           L  V   A+ A G   S A+  DG+L  WG +  GQLG G   +    P  V  L+G + 
Sbjct: 231 LRNV---ASVAGGCYHSLAVHADGTLSAWGLNSYGQLGDGT-FSNRATPRPVPGLSGVRC 286

Query: 175 VKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSST 234
           V  SF   H+LA   +G ++ WG +  G  G+ G A   SP                   
Sbjct: 287 VATSF--FHSLALRAEGTVWAWGLNGYGEQGD-GTASRQSP------------------- 324

Query: 235 IEKAQKLVSEGMEKEKYMPIIWEPFLVEGVE-VVDIACGFDHSLVLGRNGVLLSCGSNVY 293
                                  P  V G+  V+ +A G  HSL +  NG + + G N  
Sbjct: 325 ----------------------TPRPVPGLSGVLSVATGTFHSLAVNTNGTVSAWGHNGQ 362

Query: 294 GQLGREKQDMGMFPVDI 310
           GQLG         PV +
Sbjct: 363 GQLGDGTATHRSTPVTV 379



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 51/183 (27%), Positives = 75/183 (40%), Gaps = 55/183 (30%)

Query: 175 VKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSST 234
           V +S G  H+LA   DG ++ WG SA G                                
Sbjct: 35  VPLSAGDSHSLAVHADGSVWAWGASASG-------------------------------- 62

Query: 235 IEKAQKLVSEGMEKEKYMPIIWEPFLVEGV-EVVDIACGFDHSLVLGRNGVLLSCGSNVY 293
                 L  EG    ++ P+      V G+ ++V +A G  HSL +  +G L + G N Y
Sbjct: 63  ------LREEGALSRRFAPVP-----VPGLSDIVSVAAGGAHSLAVRADGTLWTWGGNPY 111

Query: 294 GQLGREKQDMGMFPVDI-NFHPV-SISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSS 351
           GQLG         PV +     V ++++GLGHSLA+   R+         + +WG N+  
Sbjct: 112 GQLGDGTTTARALPVQVAGLSGVRAVATGLGHSLAL---RADGT------VWAWGLNQFG 162

Query: 352 QLG 354
           QLG
Sbjct: 163 QLG 165


>gi|226311363|ref|YP_002771257.1| hypothetical protein BBR47_17760 [Brevibacillus brevis NBRC 100599]
 gi|226094311|dbj|BAH42753.1| hypothetical protein [Brevibacillus brevis NBRC 100599]
          Length = 323

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 96/314 (30%), Positives = 147/314 (46%), Gaps = 36/314 (11%)

Query: 65  DVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAA 124
           +V S +AG  HSL + ++G VWAWG N   QLG G  E R   N+P  V+GL  V   AA
Sbjct: 31  NVISSAAGGSHSLILRSDGTVWAWGNNGNGQLGDGTFEQR---NEPVLVKGLTGVTKIAA 87

Query: 125 FASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHA 184
            +S   S A+  DG++W WG + +GQLG     T + +   V+A+    ++ ++ G  H 
Sbjct: 88  GSSH--SLALKSDGTVWGWGWNGKGQLG-NNTTTSSNISKPVQAVGLTDVIDIAAGDAHG 144

Query: 185 LAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSE 244
           LA  +DG ++ WG ++     NL   +ES       D  + +     + T++K   + S 
Sbjct: 145 LALKKDGTVWIWGSNST----NLPTRVESLT-----DVRAIAAAGAHNLTVKKDGTVWSW 195

Query: 245 GMEKEKYMPIIWE-----PFLVEGV-EVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGR 298
           G      + I        P  V  +  +V +A GF HSL L   G + + G N YGQ+G 
Sbjct: 196 GWNGYGQLGINNTGSKDVPTKVSNLSNIVSVAAGFHHSLALDVEGKVYAWGGNTYGQVGD 255

Query: 299 EKQDMGMFPVDIN--FHPVSISSG--LGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLG 354
                   PV++      V I+SG    H+LA+ +  +         + +WG   S QLG
Sbjct: 256 GTTTQRNAPVEVPSLVDIVEIASGSYSYHTLALKKDGT---------VYAWGLGTSGQLG 306

Query: 355 R--MGPDNVPLVVE 366
                  N+P+ V 
Sbjct: 307 NGTTTNSNIPIQVN 320



 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 74/273 (27%), Positives = 124/273 (45%), Gaps = 34/273 (12%)

Query: 55  EPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVE 114
           EP  V GL + VT ++AG  HSLA+ ++G VW WG N + QLG     S    + P +  
Sbjct: 72  EPVLVKGL-TGVTKIAAGSSHSLALKSDGTVWGWGWNGKGQLGNNTTTSSNI-SKPVQAV 129

Query: 115 GL-DQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEK 173
           GL D +++ A  A G+   A+  DG++W+WG +               +P+RVE+L   +
Sbjct: 130 GLTDVIDIAAGDAHGL---ALKKDGTVWIWGSNSTN------------LPTRVESLTDVR 174

Query: 174 IVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLD----SNIDRSSESDQE 229
            +  +    H L   +DG ++ WG++  G++G      +  P      SNI   +     
Sbjct: 175 AIAAAG--AHNLTVKKDGTVWSWGWNGYGQLGINNTGSKDVPTKVSNLSNIVSVAAGFHH 232

Query: 230 ISSSTIE--------KAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGR 281
             +  +E             V +G   ++  P+   P LV+ VE+   +  + H+L L +
Sbjct: 233 SLALDVEGKVYAWGGNTYGQVGDGTTTQRNAPVE-VPSLVDIVEIASGSYSY-HTLALKK 290

Query: 282 NGVLLSCGSNVYGQLGREKQDMGMFPVDINFHP 314
           +G + + G    GQLG         P+ +N  P
Sbjct: 291 DGTVYAWGLGTSGQLGNGTTTNSNIPIQVNIVP 323


>gi|198415420|ref|XP_002129368.1| PREDICTED: similar to regulator of chromosome condensation (RCC1)
           and BTB (POZ) domain containing protein 1 [Ciona
           intestinalis]
          Length = 554

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 69/215 (32%), Positives = 106/215 (49%), Gaps = 21/215 (9%)

Query: 20  FMRSASGTAVVSFGDGSQGALGLPTSLTGV---GGDAY--------EPTRVPGLPS---- 64
            + S SG  ++S   GS   + + T   GV   G ++Y         P   P L S    
Sbjct: 91  LLESFSGQKIISLSAGSGPHVLVLTQDGGVYSWGHNSYMQLGNGGTSPGTSPSLLSRNIS 150

Query: 65  -DVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEG-LDQVNVC 122
             V  ++ G +HS+A+T  G V+ WG NN  Q+G G   S A    P++V   +    + 
Sbjct: 151 NKVVQIACGSHHSMALTTEGEVYTWGYNNCGQIGSG---STANQGSPRKVTACIGNKRII 207

Query: 123 AAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWG 182
                   S  + D G ++ WG +  GQLG+G ++ +   P RV AL G  I +V  G+ 
Sbjct: 208 DITCGQTTSLCVTDSGEVYSWGYNGNGQLGVGNNVNQT-NPCRVAALQGVVIAQVVCGYA 266

Query: 183 HALAQTEDGKLFGWGYSADGRIGNLGKALESSPLD 217
           HALA T++G +FGWG ++ G++G+  KA   +PL 
Sbjct: 267 HALALTDNGVVFGWGANSYGQLGSGNKANTCTPLQ 301



 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 73/293 (24%), Positives = 127/293 (43%), Gaps = 68/293 (23%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLP-SDVTSVSAGH-YHSLAVTNNGAVW 86
           V S G  + G LG+     G    + EP  +       + S+SAG   H L +T +G V+
Sbjct: 67  VYSLGTNTSGCLGV-----GDNSSSLEPRLLESFSGQKIISLSAGSGPHVLVLTQDGGVY 121

Query: 87  AWGRNNEVQLGRG--------ALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDG 138
           +WG N+ +QLG G        +L SR   N   ++        C +  S     A+  +G
Sbjct: 122 SWGHNSYMQLGNGGTSPGTSPSLLSRNISNKVVQI-------ACGSHHS----MALTTEG 170

Query: 139 SLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEK-IVKVSFGWGHALAQTEDGKLFGWG 197
            ++ WG +  GQ+G G    +   P +V A  G K I+ ++ G   +L  T+ G+++ WG
Sbjct: 171 EVYTWGYNNCGQIGSGSTANQG-SPRKVTACIGNKRIIDITCGQTTSLCVTDSGEVYSWG 229

Query: 198 YSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWE 257
           Y+ +G++G          + +N+++++                                 
Sbjct: 230 YNGNGQLG----------VGNNVNQTNPCRVAA--------------------------- 252

Query: 258 PFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDI 310
              ++GV +  + CG+ H+L L  NGV+   G+N YGQLG   +     P+ +
Sbjct: 253 ---LQGVVIAQVVCGYAHALALTDNGVVFGWGANSYGQLGSGNKANTCTPLQV 302



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 61/246 (24%), Positives = 110/246 (44%), Gaps = 59/246 (23%)

Query: 117 DQVNVCAAF---ASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEK 173
           +++N+   F   A+ V+ + +  D  ++  G +  G LG+G D + ++ P  +E+ +G+K
Sbjct: 43  EKINLVFTFGQSATEVIFTTL--DEKVYSLGTNTSGCLGVG-DNSSSLEPRLLESFSGQK 99

Query: 174 IVKVSFGWG-HALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISS 232
           I+ +S G G H L  T+DG ++ WG+++  ++GN G +  +SP                 
Sbjct: 100 IISLSAGSGPHVLVLTQDGGVYSWGHNSYMQLGNGGTSPGTSP----------------- 142

Query: 233 STIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNV 292
                   L+S  +  +                VV IACG  HS+ L   G + + G N 
Sbjct: 143 -------SLLSRNISNK----------------VVQIACGSHHSMALTTEGEVYTWGYNN 179

Query: 293 YGQLGR-EKQDMGMFPVDINFHPVSISSGLGHSLAI---CEVRSSNVTGGARGIVSWGWN 348
            GQ+G     + G         P  +++ +G+   I   C   +S     +  + SWG+N
Sbjct: 180 CGQIGSGSTANQG--------SPRKVTACIGNKRIIDITCGQTTSLCVTDSGEVYSWGYN 231

Query: 349 RSSQLG 354
            + QLG
Sbjct: 232 GNGQLG 237


>gi|345494372|ref|XP_001602409.2| PREDICTED: probable E3 ubiquitin-protein ligase HERC4-like [Nasonia
           vitripennis]
          Length = 1083

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 82/286 (28%), Positives = 136/286 (47%), Gaps = 28/286 (9%)

Query: 66  VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAF 125
           V  ++ G  H++ +T +G V++ G N+  QLG      R      + + GLD      A 
Sbjct: 63  VEQIACGETHTVLITKDGEVFSCGNNDSGQLGHEKPTKRL-----QMIPGLDAFIFKQAA 117

Query: 126 ASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHAL 185
                S A+ + G L+ WG +  GQLGLG  +T A  P  V+AL    +V+++ G  H L
Sbjct: 118 CGASHSVAVNNWGQLFCWGSNADGQLGLGTPLTIAHTPRMVKALGTSIVVQIACGKKHTL 177

Query: 186 AQTEDGKLFGWGYSADGRIGNLGK--ALESSPL----DSNIDRSSESDQEISSSTIEKAQ 239
           A T +G+L+ WG ++DG++G LG+   +E+ P      + I  +  +     S  + K+ 
Sbjct: 178 ALTNNGELYAWGSNSDGQLG-LGQDVKIETRPKLITGLATIPIAFIACGGYHSIVVSKSG 236

Query: 240 KLV--------SEGME--KEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCG 289
            +           GM    +KY+P + +   +   +V  +ACG + S+ L  +G + +CG
Sbjct: 237 AVFGWGRNTFGQLGMNDISDKYVPCLLKT--LRNAKVKYVACGEEFSVFLTMDGGVFTCG 294

Query: 290 SNVYGQLGREKQDMGMFPVDI----NFHPVSISSGLGHSLAICEVR 331
           + +YGQLG       + P  I          IS G  H+LA+   R
Sbjct: 295 AGMYGQLGHGANSNEILPRQIIELMGSVVTQISCGKRHTLALVPSR 340



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 52/173 (30%), Positives = 80/173 (46%), Gaps = 16/173 (9%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTR---VPGLPS-DVTSVSAGHYHSLAVTNNGA 84
           + ++G  S G LGL       G D    TR   + GL +  +  ++ G YHS+ V+ +GA
Sbjct: 185 LYAWGSNSDGQLGL-------GQDVKIETRPKLITGLATIPIAFIACGGYHSIVVSKSGA 237

Query: 85  VWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWG 144
           V+ WGRN   QLG   +  +     P  ++ L    V         S  +  DG ++  G
Sbjct: 238 VFGWGRNTFGQLGMNDISDKYV---PCLLKTLRNAKVKYVACGEEFSVFLTMDGGVFTCG 294

Query: 145 KSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTED-GKLFGW 196
               GQLG G +  E I+P ++  L G  + ++S G  H LA     GK++ W
Sbjct: 295 AGMYGQLGHGANSNE-ILPRQIIELMGSVVTQISCGKRHTLALVPSRGKVYAW 346



 Score = 61.6 bits (148), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 71/259 (27%), Positives = 115/259 (44%), Gaps = 38/259 (14%)

Query: 134 IGDDGSLWVWGKSKRGQLGLGKDITEAIV-PSRVEALAGEKIVKVSFGWGHALAQTEDGK 192
           I +D +++ WG +  G+LGLG    E I+ P  ++      + +++ G  H +  T+DG+
Sbjct: 22  IPNDNNMYCWGSTVYGELGLGGIEDENILMPRELDFQKATAVEQIACGETHTVLITKDGE 81

Query: 193 LFGWGYSADGRIGNLG--KALESSP-LDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKE 249
           +F  G +  G++G+    K L+  P LD+ I + +       S  +    +L   G   +
Sbjct: 82  VFSCGNNDSGQLGHEKPTKRLQMIPGLDAFIFKQAACGAS-HSVAVNNWGQLFCWGSNAD 140

Query: 250 ------KYMPIIWEPFLVEGV---EVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLG--- 297
                   + I   P +V+ +    VV IACG  H+L L  NG L + GSN  GQLG   
Sbjct: 141 GQLGLGTPLTIAHTPRMVKALGTSIVVQIACGKKHTLALTNNGELYAWGSNSDGQLGLGQ 200

Query: 298 ------REKQDMGMFPVDINFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSS 351
                 R K   G+  + I F    I+ G  HS+         V   +  +  WG N   
Sbjct: 201 DVKIETRPKLITGLATIPIAF----IACGGYHSI---------VVSKSGAVFGWGRNTFG 247

Query: 352 QLGR--MGPDNVPLVVEGL 368
           QLG   +    VP +++ L
Sbjct: 248 QLGMNDISDKYVPCLLKTL 266


>gi|345857538|ref|ZP_08809972.1| cell wall binding repeat 2 family protein [Desulfosporosinus sp.
           OT]
 gi|344329366|gb|EGW40710.1| cell wall binding repeat 2 family protein [Desulfosporosinus sp.
           OT]
          Length = 732

 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 104/360 (28%), Positives = 160/360 (44%), Gaps = 55/360 (15%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAW 88
           V ++GD S+G LG   + T        P +V  L ++V SVSAG  H+LA+  +G VWAW
Sbjct: 65  VWAWGDNSEGQLGQGVADTN---PVATPIQVKDL-TNVISVSAGGVHALALKADGTVWAW 120

Query: 89  GRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKR 148
           G N   QLG       A    P++VEGL   N+ A  A    S A+  DG +W WG ++ 
Sbjct: 121 GNNETDQLGVDQASPIAI---PRQVEGLQ--NIVAIAAGLEFSLALSSDGKVWAWGANEY 175

Query: 149 GQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSA-------- 200
            Q+    D  +   P  V  L+G  +VK++ G    LA   DG ++ WG           
Sbjct: 176 KQINYFSDAIKIATPQIVNNLSG--VVKIAAGSAWCLALKNDGTVWTWGAQKVPMGNDDQ 233

Query: 201 DGRIGNLGKALESSPLDSNIDRSSESDQEIS---SSTI--EKAQKLVSEGMEKEKYM--P 253
           DG + N+    + + +   I  S+     ++     T+    + +L+  G   +++   P
Sbjct: 234 DGEVTNITNLTQINGISDVISVSAGYSHSLALKGDGTVWGWGSNELLQLGSHDQQWFDSP 293

Query: 254 IIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGR----EKQDMGMFPVD 309
           +   P       V  ++ G   ++ L  +G + + G N+YGQLG     +   +  +PV 
Sbjct: 294 VQISPL----KNVTTVSAGAYLTMALTNDGTVWTLGGNIYGQLGNGIKADSLPITAYPVK 349

Query: 310 IN--FHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGW--NRSSQLGR-----MGPDN 360
            +      SIS+G G +L           G A G V WGW  N   QLG      MG D+
Sbjct: 350 ASNITQATSISAGYGFAL-----------GRALGSV-WGWGDNSKGQLGAGIVNVMGEDD 397



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 81/277 (29%), Positives = 141/277 (50%), Gaps = 20/277 (7%)

Query: 67  TSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFA 126
           + ++AG    LAV   G VWAWG N+E QLG+G  ++      P +V+  D  NV +  A
Sbjct: 47  SQLAAGANFGLAVDAQGNVWAWGDNSEGQLGQGVADTNPV-ATPIQVK--DLTNVISVSA 103

Query: 127 SGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALA 186
            GV + A+  DG++W WG ++  QLG+ +    AI P +VE L  + IV ++ G   +LA
Sbjct: 104 GGVHALALKADGTVWAWGNNETDQLGVDQASPIAI-PRQVEGL--QNIVAIAAGLEFSLA 160

Query: 187 QTEDGKLFGWGYSADGRIGNLGKALE-SSP-----LDSNIDRSSESDQEIS---SSTIEK 237
            + DGK++ WG +   +I     A++ ++P     L   +  ++ S   ++     T+  
Sbjct: 161 LSSDGKVWAWGANEYKQINYFSDAIKIATPQIVNNLSGVVKIAAGSAWCLALKNDGTVWT 220

Query: 238 --AQKLVSEGMEKEKYMPIIWEPFLVEGV-EVVDIACGFDHSLVLGRNGVLLSCGSNVYG 294
             AQK+     +++  +  I     + G+ +V+ ++ G+ HSL L  +G +   GSN   
Sbjct: 221 WGAQKVPMGNDDQDGEVTNITNLTQINGISDVISVSAGYSHSLALKGDGTVWGWGSNELL 280

Query: 295 QLGREKQDMGMFPVDIN--FHPVSISSGLGHSLAICE 329
           QLG   Q     PV I+   +  ++S+G   ++A+  
Sbjct: 281 QLGSHDQQWFDSPVQISPLKNVTTVSAGAYLTMALTN 317


>gi|17510153|ref|NP_490834.1| Protein HERC-1 [Caenorhabditis elegans]
 gi|351051254|emb|CCD73459.1| Protein HERC-1 [Caenorhabditis elegans]
          Length = 1019

 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 94/314 (29%), Positives = 149/314 (47%), Gaps = 29/314 (9%)

Query: 56  PTRVPGLPSD-----VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDP 110
           P R+ G P+D     VTSV+ G  H++ +T +G +W+ G N + QLGRG+    +    P
Sbjct: 28  PERIIGAPNDMDGTAVTSVTCGEQHTVFLTKDGKMWSVGSNMDGQLGRGSRTEGSFSIYP 87

Query: 111 KRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALA 170
                  ++   +A  S  VS  + DDG ++ WG ++ GQLG+    T    P RV+ + 
Sbjct: 88  VSWTSSAKIIQISAGRSHTVS--VTDDGRVFAWGSNEHGQLGMESKFTWQGTPRRVQEI- 144

Query: 171 GEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALES---SPLDSNIDRSSES- 226
              IV+V+ G  H +A  E G++F WG  ADGR  +  + +E     P+   +  +    
Sbjct: 145 -NDIVQVASGSNHCIALDEGGRVFVWGEQADGRCIHRPEPVEQLSGVPIVRVLAGARHCL 203

Query: 227 DQEISSSTIEKAQKLVSE-GMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVL 285
               S +     Q    E G++  +    +     ++G+ VV+ ACG +H+++L   G  
Sbjct: 204 ALSASGAVFTWGQNNSGELGIDDLRPQTSVQHVHQMDGLGVVEAACGDNHTVLLTHCGRT 263

Query: 286 LSCGSNVYGQLGR----EKQDMGMFPVD-INFHPVSISSGLGHSLAICEVRSSNVTGGAR 340
            S GS+  GQ G     EK+       D I  H   I++G  H++AIC+        GA 
Sbjct: 264 FSFGSDALGQCGFGKKVEKRTNPTAVSDLIGSHVTRIAAGACHTIAICK--------GAP 315

Query: 341 GIVSWGWNRSSQLG 354
               +G N S QLG
Sbjct: 316 --YPFGLNSSGQLG 327



 Score = 67.8 bits (164), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 49/174 (28%), Positives = 87/174 (50%), Gaps = 23/174 (13%)

Query: 55  EPT-RVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRV 113
           EP  ++ G+P  +  V AG  H LA++ +GAV+ WG+NN  +LG   L  + +     ++
Sbjct: 182 EPVEQLSGVP--IVRVLAGARHCLALSASGAVFTWGQNNSGELGIDDLRPQTSVQHVHQM 239

Query: 114 EGLDQVNVCAAFASGVVSSAIGDD--------GSLWVWGKSKRGQLGLGKDITEAIVPSR 165
           +GL           GVV +A GD+        G  + +G    GQ G GK + +   P+ 
Sbjct: 240 DGL-----------GVVEAACGDNHTVLLTHCGRTFSFGSDALGQCGFGKKVEKRTNPTA 288

Query: 166 VEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSN 219
           V  L G  + +++ G  H +A  + G  + +G ++ G++GN     +S+P  ++
Sbjct: 289 VSDLIGSHVTRIAAGACHTIAICK-GAPYPFGLNSSGQLGNGKIMTQSTPRKTD 341



 Score = 61.6 bits (148), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 50/184 (27%), Positives = 84/184 (45%), Gaps = 17/184 (9%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAW 88
           V ++G    G LG+ +  T  G     P RV  + +D+  V++G  H +A+   G V+ W
Sbjct: 115 VFAWGSNEHGQLGMESKFTWQGT----PRRVQEI-NDIVQVASGSNHCIALDEGGRVFVW 169

Query: 89  GRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKR 148
           G   +   GR         + P+ VE L  V +    A      A+   G+++ WG++  
Sbjct: 170 GEQAD---GRCI-------HRPEPVEQLSGVPIVRVLAGARHCLALSASGAVFTWGQNNS 219

Query: 149 GQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLG 208
           G+LG+  D+        V  + G  +V+ + G  H +  T  G+ F +G  A G+ G  G
Sbjct: 220 GELGI-DDLRPQTSVQHVHQMDGLGVVEAACGDNHTVLLTHCGRTFSFGSDALGQCG-FG 277

Query: 209 KALE 212
           K +E
Sbjct: 278 KKVE 281



 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 59/222 (26%), Positives = 101/222 (45%), Gaps = 20/222 (9%)

Query: 89  GRNNEVQLGRGALESRATWNDPKRVEG----LDQVNVCAAFASGVVSSAIGDDGSLWVWG 144
           G   E QLG    ES  T   P+R+ G    +D   V +       +  +  DG +W  G
Sbjct: 9   GHTGEGQLGVRLSES--TIQVPERIIGAPNDMDGTAVTSVTCGEQHTVFLTKDGKMWSVG 66

Query: 145 KSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRI 204
            +  GQLG G     +     V   +  KI+++S G  H ++ T+DG++F WG +  G++
Sbjct: 67  SNMDGQLGRGSRTEGSFSIYPVSWTSSAKIIQISAGRSHTVSVTDDGRVFAWGSNEHGQL 126

Query: 205 GNLGKAL-ESSP-----LDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEP 258
           G   K   + +P     ++  +  +S S+  I+   +++  ++   G + +     I  P
Sbjct: 127 GMESKFTWQGTPRRVQEINDIVQVASGSNHCIA---LDEGGRVFVWGEQADGR--CIHRP 181

Query: 259 FLVE---GVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLG 297
             VE   GV +V +  G  H L L  +G + + G N  G+LG
Sbjct: 182 EPVEQLSGVPIVRVLAGARHCLALSASGAVFTWGQNNSGELG 223



 Score = 39.3 bits (90), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 46/194 (23%), Positives = 79/194 (40%), Gaps = 48/194 (24%)

Query: 144 GKSKRGQLGLGKDITEAIVPSRV----EALAGEKIVKVSFGWGHALAQTEDGKLFGWGYS 199
           G +  GQLG+    +   VP R+      + G  +  V+ G  H +  T+DGK++  G +
Sbjct: 9   GHTGEGQLGVRLSESTIQVPERIIGAPNDMDGTAVTSVTCGEQHTVFLTKDGKMWSVGSN 68

Query: 200 ADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPF 259
            DG++G                R S ++   S                     P+ W   
Sbjct: 69  MDGQLG----------------RGSRTEGSFS-------------------IYPVSW--- 90

Query: 260 LVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREK----QDMGMFPVDINFHPV 315
                +++ I+ G  H++ +  +G + + GSN +GQLG E     Q       +IN   V
Sbjct: 91  -TSSAKIIQISAGRSHTVSVTDDGRVFAWGSNEHGQLGMESKFTWQGTPRRVQEIN-DIV 148

Query: 316 SISSGLGHSLAICE 329
            ++SG  H +A+ E
Sbjct: 149 QVASGSNHCIALDE 162


>gi|379721973|ref|YP_005314104.1| hypothetical protein PM3016_4177 [Paenibacillus mucilaginosus 3016]
 gi|378570645|gb|AFC30955.1| hypothetical protein PM3016_4177 [Paenibacillus mucilaginosus 3016]
          Length = 337

 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 89/259 (34%), Positives = 126/259 (48%), Gaps = 28/259 (10%)

Query: 52  DAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPK 111
           D   P +V GL S V ++ AG  HSLAV  +G+VWAWG N   QLG G  +SR+T   P 
Sbjct: 68  DRLTPVQVQGLHS-VVALEAGSSHSLAVKADGSVWAWGWNTYGQLGDGTTDSRST---PV 123

Query: 112 RVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAG 171
           +V+ LD V V  A  SG  S A+  DGS+W WG +  GQLG G   TE+ VP +V  L  
Sbjct: 124 QVQALDSV-VAVAAGSG-HSLAVKADGSVWAWGANWSGQLGDGT-YTESTVPVQVTGLG- 179

Query: 172 EKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALES-SPLD------------- 217
             +V VS G   + A   DG ++ WG +  G++G+   A  S SP+              
Sbjct: 180 -SVVSVSAGNTFSSALKSDGTVWAWGANDSGQLGSETAASNSPSPVQVTGMASAAAISSG 238

Query: 218 SNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSL 277
           S+   + ++D  + +     + +L   G       P+     +     VV +A G  H L
Sbjct: 239 SDYSLALKNDGTVWAWGYNSSGQL-GNGTTTSSSAPVQ----VTRLGSVVSVAAGPLHGL 293

Query: 278 VLGRNGVLLSCGSNVYGQL 296
            +   G +   G+N YGQL
Sbjct: 294 AVQSGGTVWDWGNNTYGQL 312



 Score = 94.7 bits (234), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 92/292 (31%), Positives = 136/292 (46%), Gaps = 30/292 (10%)

Query: 52  DAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPK 111
           D Y P  V  L S V  +SAG   S AV ++G  WAWG N   QLG G    R T   P 
Sbjct: 18  DRYSPIPVKNLDS-VIGISAGGAASFAVRSDGTAWAWGSNLFGQLGDGTTYDRLT---PV 73

Query: 112 RVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAG 171
           +V+GL  V    A +S   S A+  DGS+W WG +  GQLG G   + +  P +V+AL  
Sbjct: 74  QVQGLHSVVALEAGSSH--SLAVKADGSVWAWGWNTYGQLGDGTTDSRS-TPVQVQAL-- 128

Query: 172 EKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLD-------------S 218
           + +V V+ G GH+LA   DG ++ WG +  G++G+      + P+              +
Sbjct: 129 DSVVAVAAGSGHSLAVKADGSVWAWGANWSGQLGDGTYTESTVPVQVTGLGSVVSVSAGN 188

Query: 219 NIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGV-EVVDIACGFDHSL 277
               + +SD  + +     + +L SE        P+      V G+     I+ G D+SL
Sbjct: 189 TFSSALKSDGTVWAWGANDSGQLGSETAASNSPSPV-----QVTGMASAAAISSGSDYSL 243

Query: 278 VLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINF--HPVSISSGLGHSLAI 327
            L  +G + + G N  GQLG         PV +      VS+++G  H LA+
Sbjct: 244 ALKNDGTVWAWGYNSSGQLGNGTTTSSSAPVQVTRLGSVVSVAAGPLHGLAV 295



 Score = 70.5 bits (171), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 67/197 (34%), Positives = 99/197 (50%), Gaps = 11/197 (5%)

Query: 11  HVNVLTSRIFMRSASGTAVVSFGDGSQGALGLPTSLT---GVGGDAYEPTRVPGLPSDVT 67
            V  L S + + + SG ++    DGS  A G   S     G   ++  P +V GL S V 
Sbjct: 124 QVQALDSVVAVAAGSGHSLAVKADGSVWAWGANWSGQLGDGTYTESTVPVQVTGLGS-VV 182

Query: 68  SVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFAS 127
           SVSAG+  S A+ ++G VWAWG N+  QLG    E+ A+ N P  V+     +  A  + 
Sbjct: 183 SVSAGNTFSSALKSDGTVWAWGANDSGQLGS---ETAAS-NSPSPVQVTGMASAAAISSG 238

Query: 128 GVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQ 187
              S A+ +DG++W WG +  GQLG G   T +  P +V  L    +V V+ G  H LA 
Sbjct: 239 SDYSLALKNDGTVWAWGYNSSGQLGNGT-TTSSSAPVQVTRLG--SVVSVAAGPLHGLAV 295

Query: 188 TEDGKLFGWGYSADGRI 204
              G ++ WG +  G++
Sbjct: 296 QSGGTVWDWGNNTYGQL 312


>gi|126330678|ref|XP_001365078.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC3 [Monodelphis
           domestica]
          Length = 1051

 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 63/237 (26%), Positives = 109/237 (45%), Gaps = 42/237 (17%)

Query: 66  VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAF 125
           +  V+ G  HSLA+++ G +++WG  ++ QLG    E       P+ ++ L+Q  +    
Sbjct: 87  IIHVACGESHSLALSDQGQLFSWGAGSDGQLGHTTTEDSVAI--PRLIKKLNQQMILQVS 144

Query: 126 ASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHAL 185
                  A+  DG  + WG+++ GQLGLGK+      P RV++L G  + +V+ G  H+ 
Sbjct: 145 CGNWHCMALAADGQFFTWGQNRHGQLGLGKEFPSQASPQRVKSLEGIPLAQVAAGGAHSF 204

Query: 186 AQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEG 245
           A +  G +FGWG +  G++G          L    DR S    +                
Sbjct: 205 ALSLSGAVFGWGRNNAGQLG----------LSDETDRQSPCHVK---------------- 238

Query: 246 MEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQD 302
                         L+   +VV I+CG +H+ VL ++G + + G+  +GQLG +  +
Sbjct: 239 --------------LLRTQKVVYISCGEEHTAVLTKSGGVFTFGAGSFGQLGHDSMN 281



 Score = 45.4 bits (106), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 32/113 (28%), Positives = 56/113 (49%), Gaps = 18/113 (15%)

Query: 266 VVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDI----NFHPVSISSGL 321
           + ++ACG +HS+ L  +G + +CG N  GQLG E++  G  P  I    + H + ++ G 
Sbjct: 37  IKEVACGGNHSIFLLEDGEVYTCGLNTKGQLGHERE--GNKPEQIGALADQHIIHVACGE 94

Query: 322 GHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPDN---VPLVVEGLEGE 371
            HSLA+ +            + SWG     QLG    ++   +P +++ L  +
Sbjct: 95  SHSLALSD---------QGQLFSWGAGSDGQLGHTTTEDSVAIPRLIKKLNQQ 138


>gi|322701288|gb|EFY93038.1| Ran exchange factor Prp20/Pim1, putative [Metarhizium acridum CQMa
           102]
          Length = 576

 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 78/302 (25%), Positives = 139/302 (46%), Gaps = 34/302 (11%)

Query: 56  PTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEG 115
           P ++ GL  D+  +SAG  H LA+T +G V+AWG   + +LGR  ++     +   R+  
Sbjct: 265 PIQIGGL-KDIKKLSAGGNHVLALTESGDVYAWGSGQQAELGRRLVQRHQFESLIPRMVD 323

Query: 116 LDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIV--PSRVEALAGEK 173
           L +  +  AFA    S AI  DG +W WG +  GQ GL  +     V  P+ ++ L G K
Sbjct: 324 LPRKGIVEAFAGFNHSFAIDKDGQVWTWGLNNFGQTGLAANEENLHVGTPTVIQGLRGYK 383

Query: 174 IVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSS 233
           I  ++ G+ H+LA TEDG++  WG   + ++G              ID S+   + +   
Sbjct: 384 IRHMAGGFQHSLACTEDGEVLAWGRCDNSQVG--------------IDVSALPREHVLCD 429

Query: 234 TIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVY 293
                    S G  +     I+ +P ++ G+    +A G D+S  +   G +L+ G +  
Sbjct: 430 ---------SRGRPR-----ILLQPTIIPGITATLVAAGIDNSFAITPEGKVLTWGYSEN 475

Query: 294 GQLGREKQDMGMFPVDINFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQL 353
            + G+        P ++    V   SG+  +L    + +S        +++WG++ + + 
Sbjct: 476 CRAGQGADTTIETPTELTGKAV---SGITATLVAAGIDNSFAITPEGKVLTWGYSENCRA 532

Query: 354 GR 355
           G+
Sbjct: 533 GQ 534



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 66/284 (23%), Positives = 103/284 (36%), Gaps = 53/284 (18%)

Query: 58  RVPGLPSD-VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGL 116
           R+  LP   +    AG  HS A+  +G VW WG NN  Q G  A E       P  ++GL
Sbjct: 320 RMVDLPRKGIVEAFAGFNHSFAIDKDGQVWTWGLNNFGQTGLAANEENLHVGTPTVIQGL 379

Query: 117 DQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLG-----LGKDITEAIVPSRVEALAG 171
               +         S A  +DG +  WG+    Q+G     L ++        R   L  
Sbjct: 380 RGYKIRHMAGGFQHSLACTEDGEVLAWGRCDNSQVGIDVSALPREHVLCDSRGRPRILLQ 439

Query: 172 EKIVK------VSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSE 225
             I+       V+ G  ++ A T +GK+  WGYS + R G                    
Sbjct: 440 PTIIPGITATLVAAGIDNSFAITPEGKVLTWGYSENCRAG-------------------- 479

Query: 226 SDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVL 285
              + + +TIE   +L  +                V G+    +A G D+S  +   G +
Sbjct: 480 ---QGADTTIETPTELTGKA---------------VSGITATLVAAGIDNSFAITPEGKV 521

Query: 286 LSCGSNVYGQLGREKQDMGMFPVDINFHPVSISSGLGHSLAICE 329
           L+ G +   + G+        P ++    V   SG   + A C 
Sbjct: 522 LTWGYSENCRAGQGADTTIETPTELTGKAV---SGKSFTFAACR 562



 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 67/322 (20%), Positives = 122/322 (37%), Gaps = 80/322 (24%)

Query: 66  VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGR------------GALESRATWNDPKRV 113
           +  V+ G  H  A+T++G V  WG N+   LGR            G        + P   
Sbjct: 141 IVQVAVGSVHCAALTHDGRVLTWGVNDSRALGRNTKCEPLAQPDGGVTNLNPLESTPAPA 200

Query: 114 EGLDQV--NVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSR------ 165
           EGL+ +  ++    A+   +  +   G ++ WG +  G  G+   + E + P +      
Sbjct: 201 EGLENLGSDITQVAATDNATFVLTRSGLVYGWG-TFFGSDGVYGFLREKMRPKKKSKYKE 259

Query: 166 ------VEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSN 219
                 ++    + I K+S G  H LA TE G ++ WG    G+   LG+ L        
Sbjct: 260 RFQVTPIQIGGLKDIKKLSAGGNHVLALTESGDVYAWG---SGQQAELGRRL-------- 308

Query: 220 IDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVL 279
                                     +++ ++  +I     +    +V+   GF+HS  +
Sbjct: 309 --------------------------VQRHQFESLIPRMVDLPRKGIVEAFAGFNHSFAI 342

Query: 280 GRNGVLLSCGSNVYGQLGREKQDMGMF---PVDIN----FHPVSISSGLGHSLAICEVRS 332
            ++G + + G N +GQ G    +  +    P  I     +    ++ G  HSLA  E   
Sbjct: 343 DKDGQVWTWGLNNFGQTGLAANEENLHVGTPTVIQGLRGYKIRHMAGGFQHSLACTEDGE 402

Query: 333 SNVTGGARGIVSWGWNRSSQLG 354
                    +++WG   +SQ+G
Sbjct: 403 ---------VLAWGRCDNSQVG 415



 Score = 45.4 bits (106), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 35/106 (33%), Positives = 53/106 (50%), Gaps = 7/106 (6%)

Query: 55  EPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVE 114
           +PT +PG+    T V+AG  +S A+T  G V  WG +   + G+GA     T   P  + 
Sbjct: 439 QPTIIPGI--TATLVAAGIDNSFAITPEGKVLTWGYSENCRAGQGA---DTTIETPTELT 493

Query: 115 GLDQVNVCAAF-ASGVVSS-AIGDDGSLWVWGKSKRGQLGLGKDIT 158
           G     + A   A+G+ +S AI  +G +  WG S+  + G G D T
Sbjct: 494 GKAVSGITATLVAAGIDNSFAITPEGKVLTWGYSENCRAGQGADTT 539


>gi|408500677|ref|YP_006864596.1| RCC1 domain-containing protein [Bifidobacterium asteroides PRL2011]
 gi|408465501|gb|AFU71030.1| RCC1 domain-containing protein [Bifidobacterium asteroides PRL2011]
          Length = 1082

 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 112/416 (26%), Positives = 180/416 (43%), Gaps = 79/416 (18%)

Query: 14  VLTSRIFMRSASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVT--SVSA 71
           V+ + + +   S     ++GD   G LG    +T       +  +  G+ +D T   VSA
Sbjct: 571 VMQNSVSLAVGSDGNAYAWGDNRSGQLG--NGMTTQQNTPVQVKKPAGVSADFTYVQVSA 628

Query: 72  GHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRV----------EGLDQVNV 121
           G+ HSLA+ ++G V+AWG N   QLG       +T   P RV           GL  + V
Sbjct: 629 GYRHSLALGSDGYVYAWGDNTYAQLGNNTSGGYSTV--PVRVCDPSTHSNVNTGLKAIQV 686

Query: 122 CAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRV-------EALAGEKI 174
            A    G  S AI  +G++W WG+++ GQLG G   + +  P RV       +A  G   
Sbjct: 687 DAG---GEHSLAIDKEGNVWAWGRNRNGQLGNGTSSSYSSAPVRVCDPEHPTDASKGLVA 743

Query: 175 VKVSFGWGHALAQTEDGKLFGWGYSADGRIG-NLGKALE-SSPL------DSNIDRSSES 226
           +KV+ G  H+LA   DG  + WG+++ G++G N+    + ++P+       +N D +S++
Sbjct: 744 LKVAGGGAHSLAIDRDGDTWAWGFNSYGQLGNNVTSGFDGANPVPVRVRDPNNPDDTSKN 803

Query: 227 DQEIS-SSTIEKAQKLVSEG------------MEKEKYMPIIWEPFLVEG-------VEV 266
            + +  S+  E +  + ++G            + +      I  P  V          + 
Sbjct: 804 LKSVQISAGFEHSIAIDAQGNTWSWGWNYWGELGQNTTNEDILSPARVYNPDNPSIPFKA 863

Query: 267 VDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQD--------------MGMFPVDINF 312
             ++ G+D SL +  NG+  S G N YGQLG    D                    D++ 
Sbjct: 864 SQVSAGYDTSLAVDINGIAWSWGRNTYGQLGYTNYDDSRGHNQPAKVRNPASPNNTDLSL 923

Query: 313 HPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPDN--VPLVVE 366
               +S+G  HSLAI         G       WG+N+  QLG     N  VP++VE
Sbjct: 924 DSTLVSAGNWHSLAI---------GKDGYTYGWGYNKYGQLGNNSNKNAYVPMLVE 970


>gi|345494033|ref|XP_001605647.2| PREDICTED: E3 ubiquitin-protein ligase HERC2-like [Nasonia
            vitripennis]
          Length = 4752

 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 101/372 (27%), Positives = 168/372 (45%), Gaps = 51/372 (13%)

Query: 19   IFMRSASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDV---TSVSAGHYH 75
            +F+ S  G  + + G+G+ G LGL     G   +  EP  +P L   +    +V +G  H
Sbjct: 2967 LFVVSQEG-KLYACGEGTNGRLGL-----GDNNNVGEPKPIPFLSQYIIKKVAVHSGGKH 3020

Query: 76   SLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIG 135
            +LA+T +G V++WG   + +LG G   +R + + P+ +E L    +         S+AI 
Sbjct: 3021 ALALTQDGKVFSWGEGEDGKLGHG---NRVSLDKPRLIEALKSKRIRDIACGSGHSAAIA 3077

Query: 136  DDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGW--GHALAQTEDGKL 193
             +G L+ WG  + G+LG G D T  + P  V+AL G+++++V+ G      +A TEDG +
Sbjct: 3078 SNGELYTWGLGEYGRLGHG-DTTTHLKPKLVDALVGQRVIQVACGSRDAQTMALTEDGSV 3136

Query: 194  FGWGYSADGRIGNLGKALESSPLDSNIDR-------SSESDQEISSSTIEKAQKLVSEGM 246
            + WG    G++G  G     SPL   +DR         E   + S + + K  ++ + G 
Sbjct: 3137 YSWGDGDFGKLGRGGSDGCYSPLP--VDRLNGLGVVQVECGAQFSLA-LTKYGEVWTWG- 3192

Query: 247  EKEKYMPI-------IWEPFLVEGV---EVVDIACGFDHSLVLGRNGVLLSCGSNVYGQL 296
             K  Y  +       +  P LVEG+   +VV +A G  H L +   G + + G N +GQ 
Sbjct: 3193 -KGDYFRLGHGNDHHVRRPTLVEGLRGKKVVHVAVGALHCLAVTDAGQVYAWGDNDHGQQ 3251

Query: 297  GREKQDMGMFPVDINFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRM 356
            G     +   P             L H+L   + + + V  G+   ++W       LG  
Sbjct: 3252 GNGSTMVNRKP------------SLVHNLE--DAKVNRVACGSSHSIAWVLTDQPTLGNQ 3297

Query: 357  GPDNVPLVVEGL 368
             P   P   + L
Sbjct: 3298 EPVTFPTAKDPL 3309



 Score = 88.6 bits (218), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 88/313 (28%), Positives = 141/313 (45%), Gaps = 61/313 (19%)

Query: 68   SVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFAS 127
            +V++G  H LA+++ G V++WG  ++ +LG G   +R T++ PK +E L    +      
Sbjct: 3985 AVNSGGKHCLALSSEGHVYSWGEGDDGKLGHG---NRITYDRPKLIEALLGTEIVDIACG 4041

Query: 128  GVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHA--L 185
            G  S+AI   G L+ WGK + G+LG G D  + + P+ V AL G K++ V+ G G A  L
Sbjct: 4042 GHHSAAISSAGWLYTWGKGRYGRLGHG-DSDDQLKPTVVTALQGYKVIDVACGSGDAQTL 4100

Query: 186  AQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEG 245
              T+D  ++ WG   DG  G LG+                                 S+G
Sbjct: 4101 CVTDDDNVWSWG---DGDYGKLGRG-------------------------------GSDG 4126

Query: 246  MEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGM 305
             +    +P+  E     G+ VV + CG   S+ L R+G + + G   Y +LG    D   
Sbjct: 4127 CK----VPMKIESL--AGLGVVKVECGSQFSVALTRSGAVYTWGKGDYHRLGHGTDDHVR 4180

Query: 306  FPVDINF----HPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQL--GRMGPD 359
             P  ++       VSI++G  H +A C  +          + +WG N   QL  G     
Sbjct: 4181 RPRKVSALQGKKIVSIATGSLHCVA-CSDKGE--------VYTWGDNDEGQLGDGTTHAQ 4231

Query: 360  NVPLVVEGLEGES 372
              P +V  L+G++
Sbjct: 4232 QSPRLVHALQGKN 4244



 Score = 80.9 bits (198), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 70/217 (32%), Positives = 102/217 (47%), Gaps = 22/217 (10%)

Query: 12  VNVLTSRIFMRSASGTA----------VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPG 61
           + VL+ R     A G+           ++++G GS G LG      G+  D   PT V  
Sbjct: 547 IEVLSDRTVTYIACGSTYSAAISSTGELLTWGRGSYGRLG-----HGICDDISIPTVVTA 601

Query: 62  LP-SDVTSVS--AGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQ 118
           L    VT V+  +G   +L VTN+G V++WG  +  +LGRG  +       PK V+ L  
Sbjct: 602 LNGHTVTHVACGSGDSQTLCVTNSGIVFSWGDGDYGKLGRGGSDGSKL---PKIVDKLLD 658

Query: 119 VNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVS 178
            NV   F  G  S+A+   G ++ WGK    +LG G +      P  VE L  +K+  +S
Sbjct: 659 QNVVKVFCGGQFSAALTAHGEVYTWGKGDHYRLGHGNE-EHVRFPKLVEGLRNKKVRDLS 717

Query: 179 FGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSP 215
            G  H LA TED  ++GWG +   +I     A+ S P
Sbjct: 718 VGNLHILAITEDQLVYGWGRNDACQIDPSLGAVVSEP 754



 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 57/190 (30%), Positives = 94/190 (49%), Gaps = 12/190 (6%)

Query: 29   VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLP-SDVTSVS--AGHYHSLAVTNNGAV 85
            + ++G G  G LG      G   D  +PT V  L    V  V+  +G   +L VT++  V
Sbjct: 4054 LYTWGKGRYGRLG-----HGDSDDQLKPTVVTALQGYKVIDVACGSGDAQTLCVTDDDNV 4108

Query: 86   WAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGK 145
            W+WG  +  +LGRG  +       P ++E L  + V         S A+   G+++ WGK
Sbjct: 4109 WSWGDGDYGKLGRGGSDGCKV---PMKIESLAGLGVVKVECGSQFSVALTRSGAVYTWGK 4165

Query: 146  SKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIG 205
                +LG G D      P +V AL G+KIV ++ G  H +A ++ G+++ WG + +G++G
Sbjct: 4166 GDYHRLGHGTD-DHVRRPRKVSALQGKKIVSIATGSLHCVACSDKGEVYTWGDNDEGQLG 4224

Query: 206  NLGKALESSP 215
            +     + SP
Sbjct: 4225 DGTTHAQQSP 4234



 Score = 74.7 bits (182), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 80/297 (26%), Positives = 120/297 (40%), Gaps = 59/297 (19%)

Query: 82   NGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLW 141
            +GA++ WG N+  QL  G LE  A    P   E L  +             A+  DG ++
Sbjct: 3893 SGAIYGWGHNHRGQL--GGLEG-AKVKLPLPCESLSALRPIQLAGGEQTLFAVTADGKVY 3949

Query: 142  VWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWG--HALAQTEDGKLFGWGYS 199
              G    G+LG G  +   +VP+ +E++    I KV+   G  H LA + +G ++ WG  
Sbjct: 3950 ATGYGALGRLGTG-GVDSVMVPTLLESIQHVFIKKVAVNSGGKHCLALSSEGHVYSWGEG 4008

Query: 200  ADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPF 259
             DG++G+  +           DR                              P + E  
Sbjct: 4009 DDGKLGHGNRI--------TYDR------------------------------PKLIEAL 4030

Query: 260  LVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDIN----FHPV 315
            L  G E+VDIACG  HS  +   G L + G   YG+LG    D  + P  +     +  +
Sbjct: 4031 L--GTEIVDIACGGHHSAAISSAGWLYTWGKGRYGRLGHGDSDDQLKPTVVTALQGYKVI 4088

Query: 316  SISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPD--NVPLVVEGLEG 370
             ++ G G +  +C     NV        SWG     +LGR G D   VP+ +E L G
Sbjct: 4089 DVACGSGDAQTLCVTDDDNVW-------SWGDGDYGKLGRGGSDGCKVPMKIESLAG 4138



 Score = 69.3 bits (168), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 55/167 (32%), Positives = 77/167 (46%), Gaps = 17/167 (10%)

Query: 50  GGDAYEPTRVPGLPSDVTSVSAGH---YHSLAVTNNGAVWAWGRNNEVQLGRGALESRAT 106
           G +   P  V G   DV  + A H    H LA+T  G V++WG  +  +LG G      +
Sbjct: 485 GSETQYPQSVYGFADDVVQI-ASHPDGKHYLALTTKGIVYSWGNGDGGRLGHG---DSFS 540

Query: 107 WNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLG--KDITEAIVPS 164
            ++P+ +E L    V         S+AI   G L  WG+   G+LG G   DI+   +P+
Sbjct: 541 CDEPQVIEVLSDRTVTYIACGSTYSAAISSTGELLTWGRGSYGRLGHGICDDIS---IPT 597

Query: 165 RVEALAGEKIVKVSFGWG--HALAQTEDGKLFGWGYSADGRIGNLGK 209
            V AL G  +  V+ G G    L  T  G +F WG   DG  G LG+
Sbjct: 598 VVTALNGHTVTHVACGSGDSQTLCVTNSGIVFSWG---DGDYGKLGR 641



 Score = 69.3 bits (168), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 87/311 (27%), Positives = 135/311 (43%), Gaps = 27/311 (8%)

Query: 79   VTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDG 138
            V  N AV+ WG N++ QLG G   S+     P   E L ++              +  +G
Sbjct: 2918 VQQNAAVYVWGLNDKDQLG-GLKGSKIKL--PVHSEVLSKLKPIHIAGGSKTLFVVSQEG 2974

Query: 139  SLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWG--HALAQTEDGKLFGW 196
             L+  G+   G+LGLG D      P  +  L+   I KV+   G  HALA T+DGK+F W
Sbjct: 2975 KLYACGEGTNGRLGLG-DNNNVGEPKPIPFLSQYIIKKVAVHSGGKHALALTQDGKVFSW 3033

Query: 197  GYSADGRIGNLGK-ALESSPLDSNIDRSSESDQEI---SSSTIEKAQKLVSEGMEKEKYM 252
            G   DG++G+  + +L+   L   +      D       S+ I    +L + G+ +   +
Sbjct: 3034 GEGEDGKLGHGNRVSLDKPRLIEALKSKRIRDIACGSGHSAAIASNGELYTWGLGEYGRL 3093

Query: 253  -----PIIWEPFLVE---GVEVVDIACGFD--HSLVLGRNGVLLSCGSNVYGQLGREKQD 302
                     +P LV+   G  V+ +ACG     ++ L  +G + S G   +G+LGR   D
Sbjct: 3094 GHGDTTTHLKPKLVDALVGQRVIQVACGSRDAQTMALTEDGSVYSWGDGDFGKLGRGGSD 3153

Query: 303  MGMFPVDINFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPDNV- 361
                P+     PV   +GLG     C  + S        + +WG     +LG     +V 
Sbjct: 3154 GCYSPL-----PVDRLNGLGVVQVECGAQFSLALTKYGEVWTWGKGDYFRLGHGNDHHVR 3208

Query: 362  -PLVVEGLEGE 371
             P +VEGL G+
Sbjct: 3209 RPTLVEGLRGK 3219



 Score = 67.8 bits (164), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 81/309 (26%), Positives = 128/309 (41%), Gaps = 55/309 (17%)

Query: 69   VSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNV--CAAFA 126
            ++ G     AVT +G V+A G     +LG G ++S      P  +E +  V +   A  +
Sbjct: 3932 LAGGEQTLFAVTADGKVYATGYGALGRLGTGGVDSVMV---PTLLESIQHVFIKKVAVNS 3988

Query: 127  SGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALA 186
             G    A+  +G ++ WG+   G+LG G  IT    P  +EAL G +IV ++ G  H+ A
Sbjct: 3989 GGKHCLALSSEGHVYSWGEGDDGKLGHGNRITYD-RPKLIEALLGTEIVDIACGGHHSAA 4047

Query: 187  QTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGM 246
             +  G L+ WG    GR G LG                +SD ++  + +   Q       
Sbjct: 4048 ISSAGWLYTWG---KGRYGRLGHG--------------DSDDQLKPTVVTALQ------- 4083

Query: 247  EKEKYMPIIWEPFLVEGVEVVDIACGF--DHSLVLGRNGVLLSCGSNVYGQLGREKQDMG 304
                            G +V+D+ACG     +L +  +  + S G   YG+LGR   D  
Sbjct: 4084 ----------------GYKVIDVACGSGDAQTLCVTDDDNVWSWGDGDYGKLGRGGSDGC 4127

Query: 305  MFPVDINFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPDNV--P 362
              P+ I        +GLG     C  + S     +  + +WG     +LG    D+V  P
Sbjct: 4128 KVPMKIES-----LAGLGVVKVECGSQFSVALTRSGAVYTWGKGDYHRLGHGTDDHVRRP 4182

Query: 363  LVVEGLEGE 371
              V  L+G+
Sbjct: 4183 RKVSALQGK 4191



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 50/184 (27%), Positives = 85/184 (46%), Gaps = 18/184 (9%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAY---EPTRVPGLPS-DVTSVSAGHYHSLAVTNNGA 84
           V S+G+G  G LG         GD++   EP  +  L    VT ++ G  +S A+++ G 
Sbjct: 522 VYSWGNGDGGRLG--------HGDSFSCDEPQVIEVLSDRTVTYIACGSTYSAAISSTGE 573

Query: 85  VWAWGRNNEVQLGRGALESRATWNDPKRVEGLD--QVNVCAAFASGVVSSAIGDDGSLWV 142
           +  WGR +  +LG G  +  +    P  V  L+   V   A  +    +  + + G ++ 
Sbjct: 574 LLTWGRGSYGRLGHGICDDISI---PTVVTALNGHTVTHVACGSGDSQTLCVTNSGIVFS 630

Query: 143 WGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADG 202
           WG    G+LG G     + +P  V+ L  + +VKV  G   + A T  G+++ WG     
Sbjct: 631 WGDGDYGKLGRGGS-DGSKLPKIVDKLLDQNVVKVFCGGQFSAALTAHGEVYTWGKGDHY 689

Query: 203 RIGN 206
           R+G+
Sbjct: 690 RLGH 693



 Score = 47.4 bits (111), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 47/161 (29%), Positives = 70/161 (43%), Gaps = 18/161 (11%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAW 88
           V S+GDG  G LG      G  G          L  +V  V  G   S A+T +G V+ W
Sbjct: 628 VFSWGDGDYGKLGR----GGSDGSKLPKIVDKLLDQNVVKVFCGGQFSAALTAHGEVYTW 683

Query: 89  GRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKR 148
           G+ +  +LG G  E       PK VEGL    V       +   AI +D  ++ WG++  
Sbjct: 684 GKGDHYRLGHGNEEHVRF---PKLVEGLRNKKVRDLSVGNLHILAITEDQLVYGWGRNDA 740

Query: 149 GQL--GLGKDITEAIVPSRVEALAGEKIVKV------SFGW 181
            Q+   LG  ++E   P+    L+G+ ++ +      SF W
Sbjct: 741 CQIDPSLGAVVSE---PTLCPTLSGKSVIGLVCGPMQSFAW 778



 Score = 39.3 bits (90), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 41/122 (33%), Positives = 57/122 (46%), Gaps = 18/122 (14%)

Query: 257 EPFLVEGVE---VVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFP---VDI 310
           EP ++E +    V  IACG  +S  +   G LL+ G   YG+LG    D    P     +
Sbjct: 543 EPQVIEVLSDRTVTYIACGSTYSAAISSTGELLTWGRGSYGRLGHGICDDISIPTVVTAL 602

Query: 311 NFHPVS-ISSGLGHSLAICEVRSSNVTGGARGIV-SWGWNRSSQLGRMGPD--NVPLVVE 366
           N H V+ ++ G G S  +C   S        GIV SWG     +LGR G D   +P +V+
Sbjct: 603 NGHTVTHVACGSGDSQTLCVTNS--------GIVFSWGDGDYGKLGRGGSDGSKLPKIVD 654

Query: 367 GL 368
            L
Sbjct: 655 KL 656


>gi|225438323|ref|XP_002273073.1| PREDICTED: E3 ubiquitin-protein ligase HERC2 [Vitis vinifera]
 gi|296082630|emb|CBI21635.3| unnamed protein product [Vitis vinifera]
          Length = 420

 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 93/309 (30%), Positives = 147/309 (47%), Gaps = 42/309 (13%)

Query: 66  VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQ--VNVCA 123
           + +++ G  H+L +T +G V+A G N+  QLG    ++  T  +P  V  L +  +++ A
Sbjct: 68  LVAIACGGAHTLFLTESGCVYAAGLNDFGQLGVSVDKNYTT--EPLEVSALPKKIIHIAA 125

Query: 124 AFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAI-VPSRVEALAGEKIVKVSFGWG 182
            +     S+AI  DG L++WGK+  GQLGLGK    A+ VPS+VE L G  I  V+ G  
Sbjct: 126 GYYH---SAAITADGELYMWGKNSNGQLGLGKKAANAVSVPSKVECLNGISIKMVALGSE 182

Query: 183 HALAQTEDGKLFGWGYSADGRIGN------LGKALESSPLDSNIDRSSESDQE------- 229
           H++A T+ G+   WG    GR+G+      LG    SS     + R  E  +        
Sbjct: 183 HSVAATDQGEALSWGAGGSGRLGHGHESSLLGFFRTSSEYRPRLIRRLEGIKVKNVAAGL 242

Query: 230 ISSSTIEKAQKLVSEG---MEKEKYMPI--IWEPFLVEGVEVV-DIACGFDHSLVLGRNG 283
           + S+ I++   +   G   M+K  +        P ++  +     +ACG  H+ V+  +G
Sbjct: 243 LHSACIDENGSVFIFGERAMDKFGFREAKNATAPSMISELPYSKQVACGGYHTCVISSSG 302

Query: 284 VLLSCGSNVYGQLGREKQDMGMFPVDI----NFHPVS-ISSGLGHSLAICEVRSSNVTGG 338
            L + GSN  G LG    +   FP  I    + +PVS +S G  H+ AI E         
Sbjct: 303 ELFTWGSNENGCLGMGFMETIHFPERIEGPFSKNPVSQVSCGWKHTAAISE--------- 353

Query: 339 ARGIVSWGW 347
              + +WGW
Sbjct: 354 -GNVFTWGW 361



 Score = 42.0 bits (97), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 41/130 (31%), Positives = 62/130 (47%), Gaps = 24/130 (18%)

Query: 256 WEPFLVEGVE---VVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGRE-KQDMGMFPVDIN 311
           W P +    +   +V IACG  H+L L  +G + + G N +GQLG    ++    P++++
Sbjct: 55  WRPAVCSAFDHHSLVAIACGGAHTLFLTESGCVYAAGLNDFGQLGVSVDKNYTTEPLEVS 114

Query: 312 FHP---VSISSGLGHSLAICEVRSSNVTGGARG-IVSWGWNRSSQLGRMGPD-----NVP 362
             P   + I++G  HS AI           A G +  WG N + QLG +G       +VP
Sbjct: 115 ALPKKIIHIAAGYYHSAAIT----------ADGELYMWGKNSNGQLG-LGKKAANAVSVP 163

Query: 363 LVVEGLEGES 372
             VE L G S
Sbjct: 164 SKVECLNGIS 173


>gi|348529614|ref|XP_003452308.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC3 [Oreochromis
           niloticus]
          Length = 1004

 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 83/293 (28%), Positives = 129/293 (44%), Gaps = 54/293 (18%)

Query: 66  VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAF 125
           +T VS G  HS+AV   G ++AWG  +  QLG G  E+  T   P+ V+ L    +    
Sbjct: 85  ITMVSCGRGHSMAVNEQGQLFAWGAGDGGQLGLGTTET--TVRIPRLVKRLCDHRISQVM 142

Query: 126 ASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHAL 185
                  A+  DG L+ WG++  GQLGLGK     + P  +++LAG  + +++ G  H+ 
Sbjct: 143 CGNQHCVALSRDGQLFTWGQNTSGQLGLGKGEPSKLFPHPLKSLAGIPLAQITAGGDHSF 202

Query: 186 AQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEG 245
           A +  G +FGWG +  G++G   K   + P      RS                      
Sbjct: 203 ALSLSGAVFGWGKNRAGQLGLNDKQDRAVPCHIKFLRSQ--------------------- 241

Query: 246 MEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGM 305
                              +VV I+CG +H+  L ++G L + G   +GQLG    +  +
Sbjct: 242 -------------------KVVYISCGDEHTAALTKDGGLFTFGDGSWGQLGHGSTNSEL 282

Query: 306 FP---VDINFHPVS-ISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLG 354
            P   +++    VS I+ G  H+LA   V SS V      + ++G N   QLG
Sbjct: 283 LPRRVLELMGTEVSQIACGRHHTLAF--VPSSGV------VYAFGCNSHGQLG 327



 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 83/275 (30%), Positives = 124/275 (45%), Gaps = 57/275 (20%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGL-----PSDVTSVSAGHYHSLAVTNNG 83
           + ++G G  G LGL T+ T V        R+P L        ++ V  G+ H +A++ +G
Sbjct: 104 LFAWGAGDGGQLGLGTTETTV--------RIPRLVKRLCDHRISQVMCGNQHCVALSRDG 155

Query: 84  AVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVW 143
            ++ WG+N   QLG G  E    +  P  ++ L  + +    A G  S A+   G+++ W
Sbjct: 156 QLFTWGQNTSGQLGLGKGEPSKLF--PHPLKSLAGIPLAQITAGGDHSFALSLSGAVFGW 213

Query: 144 GKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGR 203
           GK++ GQLGL  D  +  VP  ++ L  +K+V +S G  H  A T+DG LF +G   DG 
Sbjct: 214 GKNRAGQLGLN-DKQDRAVPCHIKFLRSQKVVYISCGDEHTAALTKDGGLFTFG---DGS 269

Query: 204 IGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEG 263
            G LG                       S+  E   + V E M                G
Sbjct: 270 WGQLGHG---------------------STNSELLPRRVLELM----------------G 292

Query: 264 VEVVDIACGFDHSLVL-GRNGVLLSCGSNVYGQLG 297
            EV  IACG  H+L     +GV+ + G N +GQLG
Sbjct: 293 TEVSQIACGRHHTLAFVPSSGVVYAFGCNSHGQLG 327



 Score = 68.2 bits (165), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 56/199 (28%), Positives = 99/199 (49%), Gaps = 18/199 (9%)

Query: 29  VVSFGDGSQGALGL----PTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGA 84
           + ++G  + G LGL    P+ L       +    + G+P  +  ++AG  HS A++ +GA
Sbjct: 157 LFTWGQNTSGQLGLGKGEPSKLF-----PHPLKSLAGIP--LAQITAGGDHSFALSLSGA 209

Query: 85  VWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWG 144
           V+ WG+N   QLG    + RA    P  ++ L    V         ++A+  DG L+ +G
Sbjct: 210 VFGWGKNRAGQLGLNDKQDRAV---PCHIKFLRSQKVVYISCGDEHTAALTKDGGLFTFG 266

Query: 145 KSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQT-EDGKLFGWGYSADGR 203
               GQLG G   +E ++P RV  L G ++ +++ G  H LA     G ++ +G ++ G+
Sbjct: 267 DGSWGQLGHGSTNSE-LLPRRVLELMGTEVSQIACGRHHTLAFVPSSGVVYAFGCNSHGQ 325

Query: 204 IGN--LGKALESSPLDSNI 220
           +G   LG A    P+ +++
Sbjct: 326 LGTGILGDARSPFPVKTSV 344



 Score = 38.9 bits (89), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 28/83 (33%), Positives = 44/83 (53%), Gaps = 11/83 (13%)

Query: 255 IWEP---FLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFP---- 307
           ++EP    +  G  + ++ CG  HS+ L  +G + +CGSN  GQLG +K   G+ P    
Sbjct: 21  VFEPRNCHVFSGRGLKEVGCGGQHSVFLMHDGSVYTCGSNSCGQLGHDKA--GISPEVVG 78

Query: 308 -VDINFHPVSISSGLGHSLAICE 329
            +D       +S G GHS+A+ E
Sbjct: 79  ALDTQ-KITMVSCGRGHSMAVNE 100


>gi|410450581|ref|ZP_11304618.1| chromosome condensation regulator RCC1 repeat protein [Leptospira
           sp. Fiocruz LV3954]
 gi|410015667|gb|EKO77762.1| chromosome condensation regulator RCC1 repeat protein [Leptospira
           sp. Fiocruz LV3954]
          Length = 506

 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 87/300 (29%), Positives = 145/300 (48%), Gaps = 24/300 (8%)

Query: 21  MRSASGTAVVSFGDGSQGALGLPTSLTGV---GGDAYEPTRVPGLPSDVTSVSAGHYHSL 77
           M  A   +V ++G+ ++G LG+  +        GD   PT VPG+  D    + G  H+L
Sbjct: 193 MAIAKNGSVYTWGNNAKGQLGIGNNNNPNPKEAGDRLPPTLVPGI-DDAVMGAYGFNHAL 251

Query: 78  AVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDD 137
            + ++G + ++G+NN  QLG G +           V  ++  +V    A    S+A+ ++
Sbjct: 252 ILKSDGTLVSFGQNNVGQLGNGEVNLNVNSFSTNPVAVVNLRDVIQVIAGSEHSAALTEN 311

Query: 138 GSLWVWGKSKRGQLGLGKDITEAIV---PSRVEALAGEKIVKVSFGWGHALAQTEDGKLF 194
           G ++VWGK++ G LG G+      V   P +VE L+G  I +++ G  H LA   DGK++
Sbjct: 312 GEVYVWGKNQYGNLGNGRLSAANTVQSTPVKVEGLSG--IKQIANGRDHILALASDGKIY 369

Query: 195 GWGYSADGRIGNLGKALES-SPLDSNI----DRSSESDQEISSSTIEKAQKLVSEGME-- 247
            WG +A G++G  G    + +P+ + +    + SS       S +I K+ ++   G    
Sbjct: 370 SWGLNASGQLGIGGSGFPNPTPIPTQVLNITNASSVWAGGTQSFSILKSGEVKGWGANGN 429

Query: 248 ------KEKYMPIIWEPF-LVEGVE-VVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGRE 299
                  E     ++EP   V G+E V+   CG  H+  L RNG +   G N  G LGR+
Sbjct: 430 TANLAIGETNTSKVYEPNKAVVGIENVIHFGCGATHNFALLRNGEIYGWGWNFKGSLGRQ 489



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 84/315 (26%), Positives = 132/315 (41%), Gaps = 59/315 (18%)

Query: 67  TSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQV-NVCAAF 125
           T +SAG  HS     NG V+  GRNN  QLG G        N+   +  LD + ++ +  
Sbjct: 131 TKLSAGAAHS-GFLKNGNVYTVGRNNFGQLGTGHSTGD---NNNDVIVPLDSIRDIFSIH 186

Query: 126 ASGVVSSAIGDDGSLWVWGKSKRGQLGLG-------KDITEAIVPSRVEALAGEKIVKVS 178
            +   S AI  +GS++ WG + +GQLG+G       K+  + + P+ V  +  +  V  +
Sbjct: 187 FNQNNSMAIAKNGSVYTWGNNAKGQLGIGNNNNPNPKEAGDRLPPTLVPGI--DDAVMGA 244

Query: 179 FGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKA 238
           +G+ HAL    DG L  +G +  G++GN          + N++ +S S   ++       
Sbjct: 245 YGFNHALILKSDGTLVSFGQNNVGQLGN---------GEVNLNVNSFSTNPVA------- 288

Query: 239 QKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGR 298
                                +V   +V+ +  G +HS  L  NG +   G N YG LG 
Sbjct: 289 ---------------------VVNLRDVIQVIAGSEHSAALTENGEVYVWGKNQYGNLGN 327

Query: 299 EKQDMGMFPVDINFHPVSISSGLGHSLAICEVRSSNVTGGARG-IVSWGWNRSSQLGRMG 357
            +         +   PV +  GL     I   R   +   + G I SWG N S QLG  G
Sbjct: 328 GRLSAAN---TVQSTPVKV-EGLSGIKQIANGRDHILALASDGKIYSWGLNASGQLGIGG 383

Query: 358 ---PDNVPLVVEGLE 369
              P+  P+  + L 
Sbjct: 384 SGFPNPTPIPTQVLN 398



 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 67/266 (25%), Positives = 115/266 (43%), Gaps = 70/266 (26%)

Query: 125 FASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDI----TEAIVPSRVEALAGEKIVKVSFG 180
            ++G   S    +G+++  G++  GQLG G        + IVP  ++++    I  + F 
Sbjct: 133 LSAGAAHSGFLKNGNVYTVGRNNFGQLGTGHSTGDNNNDVIVP--LDSI--RDIFSIHFN 188

Query: 181 WGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQK 240
             +++A  ++G ++ WG +A G++G +G     +P ++  DR                  
Sbjct: 189 QNNSMAIAKNGSVYTWGNNAKGQLG-IGNNNNPNPKEAG-DR------------------ 228

Query: 241 LVSEGMEKEKYMPIIWEPFLVEGVE-VVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGRE 299
                      +P    P LV G++  V  A GF+H+L+L  +G L+S G N  GQLG  
Sbjct: 229 -----------LP----PTLVPGIDDAVMGAYGFNHALILKSDGTLVSFGQNNVGQLGNG 273

Query: 300 KQDMGMFPVDINFHPVSIS---------SGLGHSLAICEVRSSNVTGGARGIVSWGWNRS 350
           + ++ +     N  PV++          +G  HS A+ E            +  WG N+ 
Sbjct: 274 EVNLNVNSFSTN--PVAVVNLRDVIQVIAGSEHSAALTENGE---------VYVWGKNQY 322

Query: 351 SQL--GRMGPDN----VPLVVEGLEG 370
             L  GR+   N     P+ VEGL G
Sbjct: 323 GNLGNGRLSAANTVQSTPVKVEGLSG 348


>gi|168008673|ref|XP_001757031.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162691902|gb|EDQ78262.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 420

 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 95/340 (27%), Positives = 145/340 (42%), Gaps = 65/340 (19%)

Query: 22  RSASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPS-DVTSVSAGHYHSLAVT 80
           RS S   V S+G G  G LG   S      D + P  + GL   ++  ++ G  H LA+T
Sbjct: 81  RSESTRTVYSWGWGDFGRLGHGNS-----SDLFIPRAIKGLKGLEIKQIACGDSHCLAIT 135

Query: 81  NNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSL 140
            +G V +WGRN   QLG G  E       P +V   + + V    A    ++A+ + G L
Sbjct: 136 GDGEVHSWGRNQNGQLGLGHTEDVLV---PNKVAAFEGIAVKMLAAGAEHTAAVTESGKL 192

Query: 141 WVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSA 200
           + WG  + G LGLG D  + +VP  V A+ GEK+  V+ GW H +A    G L+ +G+S 
Sbjct: 193 YGWGWGRYGNLGLG-DRNDRLVPGEVAAVPGEKMNLVACGWRHTIAVANSGNLYTFGWSK 251

Query: 201 DGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFL 260
            G++G+     E   +   +       Q + + TI+                        
Sbjct: 252 YGQLGH--GDFEDHLVPHQV-------QALKNKTIQA----------------------- 279

Query: 261 VEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDI----NFHPVS 316
                   ++ G+ H++ L  +G L   G N +GQ+G    D    P  I    N     
Sbjct: 280 --------VSGGWRHTVALDEDGELYGWGWNKFGQVGCGNTDDHNSPKLITGIVNEKVTR 331

Query: 317 ISSGLGHSLAICEVRSSNVTGGARG-IVSWGWNRSSQLGR 355
           ++ G  H++AI +          RG + SWG   S QLG 
Sbjct: 332 VTCGWRHTVAITD----------RGNVYSWGRGTSGQLGH 361



 Score = 92.8 bits (229), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 97/358 (27%), Positives = 156/358 (43%), Gaps = 72/358 (20%)

Query: 25  SGTAVVSFGDGSQGALGLPTSLTGVGGDAYE---PTRVPGLP-SDVTSVSAGHYHSLAVT 80
           SG  V S+G G  G LG         GDA E   P  +  L   +++S++ G  H+ A +
Sbjct: 31  SGDLVCSWGRGEDGQLGH--------GDAEERHLPLVISALDDCEISSITCGADHTTARS 82

Query: 81  NNG-AVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGS 139
            +   V++WG  +  +LG G          P+ ++GL  + +           AI  DG 
Sbjct: 83  ESTRTVYSWGWGDFGRLGHGNSSDLFI---PRAIKGLKGLEIKQIACGDSHCLAITGDGE 139

Query: 140 LWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYS 199
           +  WG+++ GQLGLG    + +VP++V A  G  +  ++ G  H  A TE GKL+GWG+ 
Sbjct: 140 VHSWGRNQNGQLGLGH-TEDVLVPNKVAAFEGIAVKMLAAGAEHTAAVTESGKLYGWGW- 197

Query: 200 ADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPF 259
             GR GNLG                                    G   ++ +P   E  
Sbjct: 198 --GRYGNLGL-----------------------------------GDRNDRLVPG--EVA 218

Query: 260 LVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDI----NFHPV 315
            V G ++  +ACG+ H++ +  +G L + G + YGQLG    +  + P  +    N    
Sbjct: 219 AVPGEKMNLVACGWRHTIAVANSGNLYTFGWSKYGQLGHGDFEDHLVPHQVQALKNKTIQ 278

Query: 316 SISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPD--NVPLVVEGLEGE 371
           ++S G  H++A+ E            +  WGWN+  Q+G    D  N P ++ G+  E
Sbjct: 279 AVSGGWRHTVALDEDGE---------LYGWGWNKFGQVGCGNTDDHNSPKLITGIVNE 327



 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/125 (30%), Positives = 62/125 (49%), Gaps = 5/125 (4%)

Query: 52  DAYEPTRVPGLPSD-VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDP 110
           D   P +V  L +  + +VS G  H++A+  +G ++ WG N   Q+G G  +     N P
Sbjct: 262 DHLVPHQVQALKNKTIQAVSGGWRHTVALDEDGELYGWGWNKFGQVGCGNTDDH---NSP 318

Query: 111 KRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALA 170
           K + G+    V         + AI D G+++ WG+   GQLG G D  +  VP R+E L+
Sbjct: 319 KLITGIVNEKVTRVTCGWRHTVAITDRGNVYSWGRGTSGQLGHG-DAVDRCVPKRIELLS 377

Query: 171 GEKIV 175
            + + 
Sbjct: 378 ADGLA 382


>gi|195168456|ref|XP_002025047.1| GL26839 [Drosophila persimilis]
 gi|194108492|gb|EDW30535.1| GL26839 [Drosophila persimilis]
          Length = 3840

 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 99/339 (29%), Positives = 146/339 (43%), Gaps = 75/339 (22%)

Query: 29   VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVT---SVSAGHYHSLAVTNNGAV 85
            V + G+G+ G LGL     GV  +   P ++P L   V    +V +G  H+LA+T +G V
Sbjct: 1886 VYACGEGTNGRLGL-----GVTHNVPLPHQLPVLHQYVVKKVAVHSGGKHALALTLDGKV 1940

Query: 86   WAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGK 145
            ++WG   + +LG G   +R T + P+ VE L    +         S+AI   G L+ WG 
Sbjct: 1941 FSWGEGEDGKLGHG---NRTTLDKPRLVETLRSKKIRDVACGSSHSAAISSQGELYTWGL 1997

Query: 146  SKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGW--GHALAQTEDGKLFGWGYSADGR 203
             + G+LG G + T+ + P  V ALAG ++++V+ G      LA TEDG +F WG   DG 
Sbjct: 1998 GEYGRLGHGDNATQ-LKPKLVAALAGRRVIQVACGSRDAQTLALTEDGSVFSWG---DGD 2053

Query: 204  IGNLGK-ALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVE 262
             G LG+   E S     I+R S                                      
Sbjct: 2054 FGKLGRGGSEGSDTPHEIERLS-------------------------------------- 2075

Query: 263  GVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLG-------REKQDMGMFPVDINFHPV 315
            G+ V+ I CG   SL L R G + + G   Y +LG       R+ Q +G        H  
Sbjct: 2076 GIGVIQIECGAQFSLALTRAGEVWTWGKGDYYRLGHGGDQHVRKPQPIGGLRGRRVIH-- 2133

Query: 316  SISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLG 354
             ++ G  H LA+ +         A  + +WG N   Q G
Sbjct: 2134 -VAVGALHCLAVTD---------AGQVYAWGDNDHGQQG 2162



 Score = 81.6 bits (200), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 53/144 (36%), Positives = 80/144 (55%), Gaps = 9/144 (6%)

Query: 68   SVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFAS 127
            +V++G  H LA+T  G V+AWG   + +LG G   +R +++ PK VE L+ +NV      
Sbjct: 3068 AVNSGGKHCLALTTEGEVYAWGEGEDGKLGHG---NRMSYDRPKLVEHLNGMNVADIACG 3124

Query: 128  GVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHA--L 185
               S+AI   G +  WGK + G+LG G D  + + P  VEAL G + + ++ G G A  L
Sbjct: 3125 SAHSAAITASGHVLTWGKGRYGRLGHG-DSEDQLRPQLVEALLGYRAIDIACGSGDAQTL 3183

Query: 186  AQTEDGKLFGWGYSADGRIGNLGK 209
              T+D  ++ WG   DG  G LG+
Sbjct: 3184 CITDDDNVWSWG---DGDYGKLGR 3204



 Score = 68.2 bits (165), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 53/188 (28%), Positives = 93/188 (49%), Gaps = 15/188 (7%)

Query: 23   SASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGL----PSDVTSVSAGHYHSLA 78
            +ASG  V+++G G  G LG      G   D   P  V  L      D+ +  +G   +L 
Sbjct: 3132 TASGH-VLTWGKGRYGRLG-----HGDSEDQLRPQLVEALLGYRAIDI-ACGSGDAQTLC 3184

Query: 79   VTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDG 138
            +T++  VW+WG  +  +LGRG  +       P ++E L  + V         S A+   G
Sbjct: 3185 ITDDDNVWSWGDGDYGKLGRGGSDG---CKLPYKIESLAGLGVIKVECGSQFSVALTKSG 3241

Query: 139  SLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGY 198
            +++ W K    +LG G  +     P +V AL G+KI+ ++ G  H +A ++ G+++ WG 
Sbjct: 3242 AVYTWSKGDFHRLGHGS-VDHVRRPKKVAALQGKKIISIATGSLHCVACSDSGEVYTWGD 3300

Query: 199  SADGRIGN 206
            + +G++G+
Sbjct: 3301 NDEGQLGD 3308



 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 42/133 (31%), Positives = 73/133 (54%), Gaps = 6/133 (4%)

Query: 75   HSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNV-CAAFASGVVSSA 133
             +LA+T +G+V++WG  +  +LGRG  E   T ++ +R+ G+  + + C A  S  ++ A
Sbjct: 2036 QTLALTEDGSVFSWGDGDFGKLGRGGSEGSDTPHEIERLSGIGVIQIECGAQFSLALTRA 2095

Query: 134  IGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKL 193
                G +W WGK    +LG G D      P  +  L G +++ V+ G  H LA T+ G++
Sbjct: 2096 ----GEVWTWGKGDYYRLGHGGD-QHVRKPQPIGGLRGRRVIHVAVGALHCLAVTDAGQV 2150

Query: 194  FGWGYSADGRIGN 206
            + WG +  G+ G+
Sbjct: 2151 YAWGDNDHGQQGS 2163



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 51/157 (32%), Positives = 74/157 (47%), Gaps = 10/157 (6%)

Query: 31   SFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPS-DVTSVSAGHYHSLAVTNNGAVWAWG 89
            S+GDG  G LG      G       P ++  L    V  V  G   S+A+T +GAV+ W 
Sbjct: 3193 SWGDGDYGKLG-----RGGSDGCKLPYKIESLAGLGVIKVECGSQFSVALTKSGAVYTWS 3247

Query: 90   RNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRG 149
            + +  +LG G+++       PK+V  L    + +     +   A  D G ++ WG +  G
Sbjct: 3248 KGDFHRLGHGSVDH---VRRPKKVAALQGKKIISIATGSLHCVACSDSGEVYTWGDNDEG 3304

Query: 150  QLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALA 186
            QLG G  +T    P  V AL G+ IVKV+ G  H LA
Sbjct: 3305 QLGDGT-VTAIQRPRLVAALQGKHIVKVTCGSAHTLA 3340



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 83/307 (27%), Positives = 136/307 (44%), Gaps = 33/307 (10%)

Query: 85   VWAWGRNNEVQLG--RGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWV 142
            V  WG N++ QLG  +G+     T++  + +  L  +++     S  +   +G +G ++ 
Sbjct: 1834 VMVWGLNDKEQLGGLKGSKVKVPTFS--QTISRLRPIHIAGGSKSLFI---VGQNGKVYA 1888

Query: 143  WGKSKRGQLGLGKDITEAI-VPSRVEALAGEKIVKVSFGWG--HALAQTEDGKLFGWGYS 199
             G+   G+LGLG  +T  + +P ++  L    + KV+   G  HALA T DGK+F WG  
Sbjct: 1889 CGEGTNGRLGLG--VTHNVPLPHQLPVLHQYVVKKVAVHSGGKHALALTLDGKVFSWGEG 1946

Query: 200  ADGRIGNLGKALESSPLDSNIDRSSE-SDQEISSS---TIEKAQKLVSEGMEKEKYM--- 252
             DG++G+  +     P      RS +  D    SS    I    +L + G+ +   +   
Sbjct: 1947 EDGKLGHGNRTTLDKPRLVETLRSKKIRDVACGSSHSAAISSQGELYTWGLGEYGRLGHG 2006

Query: 253  --PIIWEPFLV---EGVEVVDIACGFD--HSLVLGRNGVLLSCGSNVYGQLGREKQDMGM 305
                  +P LV    G  V+ +ACG     +L L  +G + S G   +G+LGR   +   
Sbjct: 2007 DNATQLKPKLVAALAGRRVIQVACGSRDAQTLALTEDGSVFSWGDGDFGKLGRGGSEGSD 2066

Query: 306  FPVDINFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPDNV--PL 363
             P     H +   SG+G     C  + S     A  + +WG     +LG  G  +V  P 
Sbjct: 2067 TP-----HEIERLSGIGVIQIECGAQFSLALTRAGEVWTWGKGDYYRLGHGGDQHVRKPQ 2121

Query: 364  VVEGLEG 370
             + GL G
Sbjct: 2122 PIGGLRG 2128



 Score = 55.8 bits (133), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 77/294 (26%), Positives = 117/294 (39%), Gaps = 59/294 (20%)

Query: 85   VWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWG 144
            ++ WG N+  QLG G   SR     P   E L  +             A+  DG L+  G
Sbjct: 2979 IYGWGHNHRGQLG-GLEGSRI--KTPTPCEALSLLRPVQLAGGEQSLFAVTPDGKLFATG 3035

Query: 145  KSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWG--HALAQTEDGKLFGWGYSADG 202
                G+LG+G   + AI P+ + +L    + KV+   G  H LA T +G+++ WG   DG
Sbjct: 3036 YGSGGRLGVGGADSWAI-PTLLGSLQHVFVKKVAVNSGGKHCLALTTEGEVYAWGEGEDG 3094

Query: 203  RIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVE 262
            ++G+  +     P                        KLV                  + 
Sbjct: 3095 KLGHGNRMSYDRP------------------------KLVEH----------------LN 3114

Query: 263  GVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDIN----FHPVSIS 318
            G+ V DIACG  HS  +  +G +L+ G   YG+LG    +  + P  +     +  + I+
Sbjct: 3115 GMNVADIACGSAHSAAITASGHVLTWGKGRYGRLGHGDSEDQLRPQLVEALLGYRAIDIA 3174

Query: 319  SGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPD--NVPLVVEGLEG 370
             G G +  +C     NV        SWG     +LGR G D   +P  +E L G
Sbjct: 3175 CGSGDAQTLCITDDDNVW-------SWGDGDYGKLGRGGSDGCKLPYKIESLAG 3221



 Score = 52.4 bits (124), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 78/309 (25%), Positives = 121/309 (39%), Gaps = 55/309 (17%)

Query: 69   VSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNV--CAAFA 126
            ++ G     AVT +G ++A G  +  +LG G  +S   W  P  +  L  V V   A  +
Sbjct: 3015 LAGGEQSLFAVTPDGKLFATGYGSGGRLGVGGADS---WAIPTLLGSLQHVFVKKVAVNS 3071

Query: 127  SGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALA 186
             G    A+  +G ++ WG+ + G+LG G  ++    P  VE L G  +  ++ G  H+ A
Sbjct: 3072 GGKHCLALTTEGEVYAWGEGEDGKLGHGNRMSYD-RPKLVEHLNGMNVADIACGSAHSAA 3130

Query: 187  QTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGM 246
             T  G +  WG    GR G LG                                    G 
Sbjct: 3131 ITASGHVLTWG---KGRYGRLG-----------------------------------HGD 3152

Query: 247  EKEKYMPIIWEPFLVEGVEVVDIACGF--DHSLVLGRNGVLLSCGSNVYGQLGREKQDMG 304
             +++  P + E  L  G   +DIACG     +L +  +  + S G   YG+LGR   D  
Sbjct: 3153 SEDQLRPQLVEALL--GYRAIDIACGSGDAQTLCITDDDNVWSWGDGDYGKLGRGGSDGC 3210

Query: 305  MFPVDINFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPDNV--P 362
              P  I        +GLG     C  + S     +  + +W      +LG    D+V  P
Sbjct: 3211 KLPYKIES-----LAGLGVIKVECGSQFSVALTKSGAVYTWSKGDFHRLGHGSVDHVRRP 3265

Query: 363  LVVEGLEGE 371
              V  L+G+
Sbjct: 3266 KKVAALQGK 3274



 Score = 40.0 bits (92), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 24/64 (37%), Positives = 36/64 (56%), Gaps = 1/64 (1%)

Query: 135  GDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLF 194
            G   +++ WG + RGQLG G + +    P+  EAL+  + V+++ G     A T DGKLF
Sbjct: 2974 GGASTIYGWGHNHRGQLG-GLEGSRIKTPTPCEALSLLRPVQLAGGEQSLFAVTPDGKLF 3032

Query: 195  GWGY 198
              GY
Sbjct: 3033 ATGY 3036



 Score = 39.7 bits (91), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 38/112 (33%), Positives = 50/112 (44%), Gaps = 18/112 (16%)

Query: 25   SGTAVVSFGDGSQGALGLPTS------------LTGVGGDAY--EPTRVPGLP-SDVTSV 69
            SG  V+    G+Q +L L  +              G GGD +  +P  + GL    V  V
Sbjct: 2075 SGIGVIQIECGAQFSLALTRAGEVWTWGKGDYYRLGHGGDQHVRKPQPIGGLRGRRVIHV 2134

Query: 70   SAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNV 121
            + G  H LAVT+ G V+AWG N+  Q G G   +      P  V GLD V V
Sbjct: 2135 AVGALHCLAVTDAGQVYAWGDNDHGQQGSG---NTFVNKKPALVIGLDAVFV 2183


>gi|115528070|gb|AAI24692.1| Sergef protein [Danio rerio]
          Length = 423

 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 84/313 (26%), Positives = 132/313 (42%), Gaps = 46/313 (14%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAW 88
           V++ G  + G LG+    T     + EP  +      VTSV+AG  H+LA T +G V+ W
Sbjct: 144 VLACGSNAFGQLGVSAEKT----HSAEPLLLKSFHEPVTSVAAGLRHALASTASGCVYQW 199

Query: 89  GR----NNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWG 144
           G     + +  L    + S  +  +P  V G   V      A     + +  +G L++WG
Sbjct: 200 GTGLSSHAKRMLNPQPVPSHLSSKEPCLVPGFAHVTTQKVIAGSAHCACLTVNGELFLWG 259

Query: 145 KSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRI 204
            +K GQL  G       V      L  E++  V  GW H +AQTE G++F WG S  G++
Sbjct: 260 SNKHGQLISGSLFLPLPVALDRSMLQDERVSDVHSGWTHLVAQTESGRVFTWGRSNYGQL 319

Query: 205 GNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGV 264
           G    ++E    D ++ RS    + +  +T                              
Sbjct: 320 GQTNHSMEKQSCDEHLVRSPVEVKALFGAT------------------------------ 349

Query: 265 EVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGR-EKQDMGM---FPVDINFHPVSISSG 320
               I+CG +H+L +   G + S G N +G  G    QD+      P   +   + I  G
Sbjct: 350 ---QISCGSEHNLAV-VGGRVFSWGWNEHGMCGDGSLQDITQPQPIPALADAVALLIGCG 405

Query: 321 LGHSLAICEVRSS 333
            GHS+A+C ++SS
Sbjct: 406 AGHSMALCSLKSS 418



 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 89/380 (23%), Positives = 158/380 (41%), Gaps = 44/380 (11%)

Query: 3   LLKSVVHNHVNVLTSRIFMRSASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRV-PG 61
           +L+ V+   +N++      +  S   + ++G  S G LG      G   D  EP RV  G
Sbjct: 15  ILRHVISWRLNLMEGDQLSKCVS--LLYTWGANSYGQLG-----QGNAEDQAEPRRVESG 67

Query: 62  LPSD-VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRG-ALESRATWNDPKRVEGLDQV 119
           L  + + +V+ G  HS  ++++G +   G+N++ QLG G  LE       P    G  Q 
Sbjct: 68  LQEEQIRAVTGGGGHSALISDSGELLVCGQNHKGQLGLGHTLEIMTFQTCPLPGFGRVQQ 127

Query: 120 NVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSF 179
             C    + +++     DG +   G +  GQLG+  + T +  P  +++   E +  V+ 
Sbjct: 128 VSCGWDFTIILTG----DGLVLACGSNAFGQLGVSAEKTHSAEPLLLKSFH-EPVTSVAA 182

Query: 180 GWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSE---------SDQEI 230
           G  HALA T  G ++ WG    G   +  + L   P+ S++              + Q++
Sbjct: 183 GLRHALASTASGCVYQWG---TGLSSHAKRMLNPQPVPSHLSSKEPCLVPGFAHVTTQKV 239

Query: 231 SSSTIEKAQ-----KLVSEGMEKEKY---------MPIIWEPFLVEGVEVVDIACGFDHS 276
            + +   A      +L   G  K            +P+  +  +++   V D+  G+ H 
Sbjct: 240 IAGSAHCACLTVNGELFLWGSNKHGQLISGSLFLPLPVALDRSMLQDERVSDVHSGWTHL 299

Query: 277 LVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINF--HPVSISSGLGHSLAICEVRSSN 334
           +    +G + + G + YGQLG+    M     D +    PV + +  G +   C    + 
Sbjct: 300 VAQTESGRVFTWGRSNYGQLGQTNHSMEKQSCDEHLVRSPVEVKALFGATQISCGSEHNL 359

Query: 335 VTGGARGIVSWGWNRSSQLG 354
              G R + SWGWN     G
Sbjct: 360 AVVGGR-VFSWGWNEHGMCG 378



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 70/229 (30%), Positives = 103/229 (44%), Gaps = 56/229 (24%)

Query: 140 LWVWGKSKRGQLGLGKDITEAIVPSRVEA-LAGEKIVKVSFGWGHALAQTEDGKLFGWGY 198
           L+ WG +  GQLG G    +A  P RVE+ L  E+I  V+ G GH+   ++ G+L   G 
Sbjct: 39  LYTWGANSYGQLGQGNAEDQA-EPRRVESGLQEEQIRAVTGGGGHSALISDSGELLVCGQ 97

Query: 199 SADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEP 258
           +  G++G LG  LE                      I   Q     G  +          
Sbjct: 98  NHKGQLG-LGHTLE----------------------IMTFQTCPLPGFGR---------- 124

Query: 259 FLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLG--REKQDMGMFPVDINFH-PV 315
                  V  ++CG+D +++L  +G++L+CGSN +GQLG   EK       +  +FH PV
Sbjct: 125 -------VQQVSCGWDFTIILTGDGLVLACGSNAFGQLGVSAEKTHSAEPLLLKSFHEPV 177

Query: 316 -SISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRM-GPDNVP 362
            S+++GL H+LA      S  +G    +  WG   SS   RM  P  VP
Sbjct: 178 TSVAAGLRHALA------STASG---CVYQWGTGLSSHAKRMLNPQPVP 217


>gi|282722854|gb|ADA84473.1| retinitis pigmentosa GTPase regulator protein 2 1-17 isoform [Danio
           rerio]
          Length = 708

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 89/324 (27%), Positives = 155/324 (47%), Gaps = 36/324 (11%)

Query: 32  FGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSA-GHYHSLAVTNNGAVWAWGR 90
           FG  + G LGL T  T       +PT V  L S+   ++A G  H+L  T+ G ++A G 
Sbjct: 60  FGSNNWGQLGLGTKTT-----VNKPTCVKALRSERVKLTACGRTHTLVFTSRGNLYACGG 114

Query: 91  NNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGV-VSSAIGDDGSLWVWGKSKRG 149
           NNE QLG G    R +++    VE  ++       A+G   S+A+  DG L++ G +  G
Sbjct: 115 NNEGQLGLGDCNDRTSFH---LVEFFNKQGPIKMLAAGSNTSAALTQDGRLYMRGDNSEG 171

Query: 150 QLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGK 209
           Q+GLGK+ + A+ P  V    G+++  VS G+ H+   T DG L+ +G    G++G   +
Sbjct: 172 QIGLGKE-SNALTPQEVS--VGKRVFWVSCGYYHSAFVTVDGALYTFGEKDSGKLGLSTE 228

Query: 210 ALESSPLDSNI----DRSSE-----------SDQEISSSTIEKAQKLVSEGMEKEKYMPI 254
            L +  +   +    DR  +           ++ E+ S  + +  +L       E  +P 
Sbjct: 229 KLANHKVPQQVTDIPDRVVQVACGGGHTVALTENEVYSFGLGQFGQLGHGTFIFESRLPR 288

Query: 255 IWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDM------GMFPV 308
           + E F      V   ACG +H+ ++  NG+L + G   +G+LG  +++        + P 
Sbjct: 289 VVEHF--RKGRVKHAACGENHTALITDNGLLYTFGDGRHGKLGLGEENFTNQFKPTLCPR 346

Query: 309 DINFHPVSISSGLGHSLAICEVRS 332
            +++H  S++ G  H L + + R+
Sbjct: 347 FLDYHVHSVTCGGCHMLVLAKPRT 370


>gi|304318007|ref|YP_003853152.1| S-layer domain-containing protein [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302779509|gb|ADL70068.1| S-layer domain protein [Thermoanaerobacterium thermosaccharolyticum
           DSM 571]
          Length = 479

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 74/259 (28%), Positives = 119/259 (45%), Gaps = 51/259 (19%)

Query: 56  PTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEG 115
           P +V G+ SDV +++AG YH++A+ N+G VWAWG N   QLG    +     + P +V+G
Sbjct: 269 PVQVKGI-SDVVAIAAGMYHTVALKNDGTVWAWGDNEHDQLGNETTKEEYH-STPVQVKG 326

Query: 116 LDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIV 175
           +  V   AA AS  V   + +DG++W WG ++ G+LG G     +  P +V  ++  K  
Sbjct: 327 ISDVKAIAAGASYTV--VLKNDGTVWAWGVNEYGKLGDGT-TNNSFTPVQVNGISNVK-- 381

Query: 176 KVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTI 235
            ++ G  H +    DG ++ WGY+  G +GN G  ++SS                     
Sbjct: 382 AIAAGAYHTVVLKNDGTVWTWGYNHYGELGN-GTTVDSST-------------------- 420

Query: 236 EKAQKLVSEGMEKEKYMPIIWEPFLVEGV-EVVDIACGFDHSLVLGRNGVLLSCGSNVYG 294
                                 P  V+G+ +V  IA G  H++ L  +G + + G N YG
Sbjct: 421 ----------------------PVQVKGISDVKAIAAGACHTVALKNDGTVWAWGCNYYG 458

Query: 295 QLGREKQDMGMFPVDINFH 313
           +LG         PV + + 
Sbjct: 459 ELGNGTAVDSSTPVQVKWQ 477



 Score = 82.4 bits (202), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 68/266 (25%), Positives = 119/266 (44%), Gaps = 54/266 (20%)

Query: 66  VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAF 125
           V +++AG YH++A+ N+G VWAWG N+  QLG G   +R     P +V+G+  V    A 
Sbjct: 228 VKAIAAGAYHTVALKNDGTVWAWGWNDCGQLGDGTTTNRTI---PVQVKGISDV---VAI 281

Query: 126 ASGVVSS-AIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHA 184
           A+G+  + A+ +DG++W WG ++  QLG  +   E    + V+      +  ++ G  + 
Sbjct: 282 AAGMYHTVALKNDGTVWAWGDNEHDQLG-NETTKEEYHSTPVQVKGISDVKAIAAGASYT 340

Query: 185 LAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSE 244
           +    DG ++ WG +  G++G                                      +
Sbjct: 341 VVLKNDGTVWAWGVNEYGKLG--------------------------------------D 362

Query: 245 GMEKEKYMPIIWEPFLVEGVEVVD-IACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDM 303
           G     + P+      V G+  V  IA G  H++VL  +G + + G N YG+LG      
Sbjct: 363 GTTNNSFTPV-----QVNGISNVKAIAAGAYHTVVLKNDGTVWTWGYNHYGELGNGTTVD 417

Query: 304 GMFPVDIN--FHPVSISSGLGHSLAI 327
              PV +       +I++G  H++A+
Sbjct: 418 SSTPVQVKGISDVKAIAAGACHTVAL 443



 Score = 82.0 bits (201), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 61/188 (32%), Positives = 101/188 (53%), Gaps = 17/188 (9%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYE--PTRVPGLPSDVTSVSAGHYHSLAVTNNGAVW 86
           V ++GD     LG  T+      + Y   P +V G+ SDV +++AG  +++ + N+G VW
Sbjct: 297 VWAWGDNEHDQLGNETT-----KEEYHSTPVQVKGI-SDVKAIAAGASYTVVLKNDGTVW 350

Query: 87  AWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKS 146
           AWG N   +LG G   +  T   P +V G+  V   AA A   V   + +DG++W WG +
Sbjct: 351 AWGVNEYGKLGDGTTNNSFT---PVQVNGISNVKAIAAGAYHTV--VLKNDGTVWTWGYN 405

Query: 147 KRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGN 206
             G+LG G  + ++  P +V+ ++  K   ++ G  H +A   DG ++ WG +  G +GN
Sbjct: 406 HYGELGNGTTV-DSSTPVQVKGISDVK--AIAAGACHTVALKNDGTVWAWGCNYYGELGN 462

Query: 207 LGKALESS 214
            G A++SS
Sbjct: 463 -GTAVDSS 469



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 65/255 (25%), Positives = 108/255 (42%), Gaps = 56/255 (21%)

Query: 118 QVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKV 177
           Q  V A  A    + A+ +DG++W WG +  GQLG G   T   +P +V+ ++   +V +
Sbjct: 225 QPTVKAIAAGAYHTVALKNDGTVWAWGWNDCGQLGDGT-TTNRTIPVQVKGIS--DVVAI 281

Query: 178 SFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEK 237
           + G  H +A   DG ++ WG +   ++GN                  E+ +E   ST   
Sbjct: 282 AAGMYHTVALKNDGTVWAWGDNEHDQLGN------------------ETTKEEYHST--- 320

Query: 238 AQKLVSEGMEKEKYMPIIWEPFLVEGV-EVVDIACGFDHSLVLGRNGVLLSCGSNVYGQL 296
                               P  V+G+ +V  IA G  +++VL  +G + + G N YG+L
Sbjct: 321 --------------------PVQVKGISDVKAIAAGASYTVVLKNDGTVWAWGVNEYGKL 360

Query: 297 GREKQDMGMFPVDINFHPVSISSGLGHSLAICEVRSSNVTGGARGIV-SWGWNRSSQLGR 355
           G    +    PV +N        G+ +  AI       V     G V +WG+N   +LG 
Sbjct: 361 GDGTTNNSFTPVQVN--------GISNVKAIAAGAYHTVVLKNDGTVWTWGYNHYGELGN 412

Query: 356 --MGPDNVPLVVEGL 368
                 + P+ V+G+
Sbjct: 413 GTTVDSSTPVQVKGI 427



 Score = 46.2 bits (108), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 29/78 (37%), Positives = 45/78 (57%), Gaps = 6/78 (7%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAW 88
           V ++G    G LG  T++     D+  P +V G+ SDV +++AG  H++A+ N+G VWAW
Sbjct: 399 VWTWGYNHYGELGNGTTV-----DSSTPVQVKGI-SDVKAIAAGACHTVALKNDGTVWAW 452

Query: 89  GRNNEVQLGRGALESRAT 106
           G N   +LG G     +T
Sbjct: 453 GCNYYGELGNGTAVDSST 470


>gi|224043366|ref|XP_002198142.1| PREDICTED: RCC1 and BTB domain-containing protein 1 [Taeniopygia
           guttata]
          Length = 537

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 54/162 (33%), Positives = 95/162 (58%), Gaps = 5/162 (3%)

Query: 62  LPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNV 121
           L   V  V+ G +HS+A++ +G ++AWG NN  Q+G G+  ++ T   P+RV    Q  +
Sbjct: 132 LIKKVVEVACGSHHSMALSMDGDLYAWGYNNCGQVGSGSTANQPT---PRRVSNCLQGKI 188

Query: 122 CAAFASGVVSS-AIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFG 180
               A G  SS A+ ++G ++ WG +  GQLGLG +  + + P RV AL    +++++ G
Sbjct: 189 VVGIACGQTSSMAVVNNGEVYGWGYNGNGQLGLGNNGNQ-LTPCRVAALHSVCVLQIACG 247

Query: 181 WGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDR 222
           + H LA T++G L+ WG +  G++G   K+ + SP+   +++
Sbjct: 248 YAHTLALTDEGLLYAWGANTYGQLGTGNKSNQLSPVQIMMEK 289



 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 79/296 (26%), Positives = 119/296 (40%), Gaps = 73/296 (24%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLP-SDVTSVSAGH-YHSLAVTNNGAVW 86
           V  FG      LG     TG       P ++  L    ++S+S G   H +  T +G V+
Sbjct: 49  VFVFGLNCSNCLG-----TGDNQSTIVPKKLEALCGKKISSLSYGSGPHVVLCTEDGEVY 103

Query: 87  AWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVV---------SSAIGDD 137
           AWG N   QLG G              +G+  V VC       V         S A+  D
Sbjct: 104 AWGHNGYSQLGNGTTN-----------QGITPVQVCTNLLIKKVVEVACGSHHSMALSMD 152

Query: 138 GSLWVWGKSKRGQLGLGKDITEAIVPSRV-EALAGEKIVKVSFGWGHALAQTEDGKLFGW 196
           G L+ WG +  GQ+G G    +   P RV   L G+ +V ++ G   ++A   +G+++GW
Sbjct: 153 GDLYAWGYNNCGQVGSGSTANQP-TPRRVSNCLQGKIVVGIACGQTSSMAVVNNGEVYGW 211

Query: 197 GYSADGR--IGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPI 254
           GY+ +G+  +GN G  L    + +                                    
Sbjct: 212 GYNGNGQLGLGNNGNQLTPCRVAA------------------------------------ 235

Query: 255 IWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDI 310
                 +  V V+ IACG+ H+L L   G+L + G+N YGQLG   +   + PV I
Sbjct: 236 ------LHSVCVLQIACGYAHTLALTDEGLLYAWGANTYGQLGTGNKSNQLSPVQI 285



 Score = 68.2 bits (165), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 74/286 (25%), Positives = 125/286 (43%), Gaps = 60/286 (20%)

Query: 76  SLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCA-AFASGVVSSAI 134
           ++ +T++  V+ +G N    LG G  +S      PK++E L    + + ++ SG      
Sbjct: 40  AIYITHSDEVFVFGLNCSNCLGTGDNQSTIV---PKKLEALCGKKISSLSYGSGPHVVLC 96

Query: 135 GDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEA-LAGEKIVKVSFGWGHALAQTEDGKL 193
            +DG ++ WG +   QLG G    + I P +V   L  +K+V+V+ G  H++A + DG L
Sbjct: 97  TEDGEVYAWGHNGYSQLGNGT-TNQGITPVQVCTNLLIKKVVEVACGSHHSMALSMDGDL 155

Query: 194 FGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMP 253
           + WGY+  G++G+   A + +P            + +S+                     
Sbjct: 156 YAWGYNNCGQVGSGSTANQPTP------------RRVSNC-------------------- 183

Query: 254 IIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDI-NF 312
                  ++G  VV IACG   S+ +  NG +   G N  GQLG       + P  +   
Sbjct: 184 -------LQGKIVVGIACGQTSSMAVVNNGEVYGWGYNGNGQLGLGNNGNQLTPCRVAAL 236

Query: 313 HPVS---ISSGLGHSLAICEVRSSNVTGGARGIV-SWGWNRSSQLG 354
           H V    I+ G  H+LA+ +           G++ +WG N   QLG
Sbjct: 237 HSVCVLQIACGYAHTLALTD----------EGLLYAWGANTYGQLG 272


>gi|328784403|ref|XP_395217.4| PREDICTED: probable E3 ubiquitin-protein ligase HERC4-like [Apis
           mellifera]
          Length = 1081

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 89/320 (27%), Positives = 142/320 (44%), Gaps = 65/320 (20%)

Query: 59  VPGLPSDVTSVSA-GHYHSLAVTNNGAVWAWGRNNEVQLG---RGALESRATWNDPKRVE 114
           +PGL + V   +A G YH+LA+   G +++WG N E QLG   +  +ES      P+ V+
Sbjct: 105 IPGLDAFVFKKAACGAYHTLAINEWGQLFSWGSNTEGQLGLNSKNFMES-----SPRMVK 159

Query: 115 GLDQVNVCAAFASGVVSS-AIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEK 173
            L   +V    A G+  + A+ ++G L+ WG +  GQLGLG D    I P  + A  G  
Sbjct: 160 TLG-TSVVVQIACGMKHAFALTNNGELYSWGSNSEGQLGLGTDTKYEIKPKFISAFIGIP 218

Query: 174 IVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSS 233
           I  ++ G  H++A ++ G +FGWG +  G++G          L+   DR+     +    
Sbjct: 219 IAFIACGGYHSIAISKSGAVFGWGKNTFGQLG----------LNDTQDRNLPCQLQ---- 264

Query: 234 TIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVY 293
           T++ A+                          +   ACG + S+ L  +G + +CG+ +Y
Sbjct: 265 TLQNAK--------------------------ICYAACGEEFSVFLTVDGGVFTCGAGMY 298

Query: 294 GQLGREKQDMGMFPVDI----NFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNR 349
           GQLG       + P  +          IS G  H+LA+   R          + +WG   
Sbjct: 299 GQLGHGSNSNEILPRQVMELMGSTVTQISCGKRHTLALVPSRGR--------VYAWGLGG 350

Query: 350 SSQLGRMGPDNV--PLVVEG 367
           + QLG     +V  P VV G
Sbjct: 351 AGQLGNHSTRSVTTPQVVHG 370



 Score = 82.4 bits (202), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 56/179 (31%), Positives = 90/179 (50%), Gaps = 8/179 (4%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAW 88
           + S+G  S+G LGL T         +    + G+P  +  ++ G YHS+A++ +GAV+ W
Sbjct: 185 LYSWGSNSEGQLGLGTDTKYEIKPKFISAFI-GIP--IAFIACGGYHSIAISKSGAVFGW 241

Query: 89  GRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKR 148
           G+N   QLG    + R   N P +++ L    +C A      S  +  DG ++  G    
Sbjct: 242 GKNTFGQLGLNDTQDR---NLPCQLQTLQNAKICYAACGEEFSVFLTVDGGVFTCGAGMY 298

Query: 149 GQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTED-GKLFGWGYSADGRIGN 206
           GQLG G +  E I+P +V  L G  + ++S G  H LA     G+++ WG    G++GN
Sbjct: 299 GQLGHGSNSNE-ILPRQVMELMGSTVTQISCGKRHTLALVPSRGRVYAWGLGGAGQLGN 356



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 67/265 (25%), Positives = 117/265 (44%), Gaps = 52/265 (19%)

Query: 48  GVGGDAYEPTRVP-----GLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALE 102
           G+GG   E   +P        +++  ++ G  +++ +T  G +++ G N+  QLG     
Sbjct: 40  GLGGIEDENILIPRELDFKKAAEIQQIACGENYTVVITQIGEIYSCGNNDYGQLGHEKGR 99

Query: 103 SRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLG-KDITEAI 161
            R      + + GLD      A      + AI + G L+ WG +  GQLGL  K+  E+ 
Sbjct: 100 KRL-----QLIPGLDAFVFKKAACGAYHTLAINEWGQLFSWGSNTEGQLGLNSKNFMES- 153

Query: 162 VPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNID 221
            P  V+ L    +V+++ G  HA A T +G+L+ WG +++G++G LG             
Sbjct: 154 SPRMVKTLGTSVVVQIACGMKHAFALTNNGELYSWGSNSEGQLG-LG------------- 199

Query: 222 RSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGR 281
                    + +  E   K +S  +                G+ +  IACG  HS+ + +
Sbjct: 200 ---------TDTKYEIKPKFISAFI----------------GIPIAFIACGGYHSIAISK 234

Query: 282 NGVLLSCGSNVYGQLG-REKQDMGM 305
           +G +   G N +GQLG  + QD  +
Sbjct: 235 SGAVFGWGKNTFGQLGLNDTQDRNL 259



 Score = 54.3 bits (129), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 69/284 (24%), Positives = 118/284 (41%), Gaps = 35/284 (12%)

Query: 105 ATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAI-VP 163
           A WN  +R+     +          V   +     ++ WG +  G+LGLG    E I +P
Sbjct: 2   ANWNKKRRLANEPVI---------AVEYPLHKKKDMFCWGSTIHGELGLGGIEDENILIP 52

Query: 164 SRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLG--KALESSP-LDSNI 220
             ++     +I +++ G  + +  T+ G+++  G +  G++G+    K L+  P LD+ +
Sbjct: 53  RELDFKKAAEIQQIACGENYTVVITQIGEIYSCGNNDYGQLGHEKGRKRLQLIPGLDAFV 112

Query: 221 DRSSESDQEISSSTIEKAQKLV-------SEGMEKEKYMPIIWEPFLVEGV---EVVDIA 270
            + +      + +  E  Q            G+  + +M     P +V+ +    VV IA
Sbjct: 113 FKKAACGAYHTLAINEWGQLFSWGSNTEGQLGLNSKNFMES--SPRMVKTLGTSVVVQIA 170

Query: 271 CGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFHPVSISSGLGHSLAI--C 328
           CG  H+  L  NG L S GSN  GQLG     +G         P  IS+ +G  +A   C
Sbjct: 171 CGMKHAFALTNNGELYSWGSNSEGQLG-----LGT-DTKYEIKPKFISAFIGIPIAFIAC 224

Query: 329 EVRSSNVTGGARGIVSWGWNRSSQLGRMGPD--NVPLVVEGLEG 370
               S     +  +  WG N   QLG       N+P  ++ L+ 
Sbjct: 225 GGYHSIAISKSGAVFGWGKNTFGQLGLNDTQDRNLPCQLQTLQN 268


>gi|403263469|ref|XP_003924054.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC6 isoform 2
           [Saimiri boliviensis boliviensis]
          Length = 988

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 79/274 (28%), Positives = 125/274 (45%), Gaps = 45/274 (16%)

Query: 25  SGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTR-VPGLPSDVTSVSAGHYHSLAVTNNG 83
           + + V S G+ S+G LG          D  EP + +  L  D+  VS G  HSLAV + G
Sbjct: 40  TNSLVHSCGENSRGQLG---RRGAPRWDLPEPVQALKTLKFDL--VSCGKEHSLAVCHKG 94

Query: 84  AVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVW 143
            V+AWG  +E QLG G L  +     P+++  L+ + +         S A+  D  ++ W
Sbjct: 95  RVFAWGAGSEGQLGVGEL--KEINFTPRKITTLNGIKIIQVSCGHYHSLALSKDSQVFSW 152

Query: 144 GKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGR 203
           GK+  GQLGLGK+      P RV +L G  + +V+ G  H+ A +  G  FGWG ++ G+
Sbjct: 153 GKNSHGQLGLGKEFPSQPSPQRVRSLEGIPLAQVAAGGAHSFALSLCGTSFGWGSNSAGQ 212

Query: 204 IGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEG 263
           +   G+         N+   S     I +                            ++ 
Sbjct: 213 LALSGR---------NVQVQSNKPLSIGA----------------------------LKN 235

Query: 264 VEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLG 297
           + V+ I+CG +H+ VL ++G + + G N  GQLG
Sbjct: 236 LGVIYISCGDEHTAVLSQDGKVFTFGDNSSGQLG 269



 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 93/334 (27%), Positives = 140/334 (41%), Gaps = 63/334 (18%)

Query: 48  GVGGDAYEPTRVPGLP-SDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLG-RGALESRA 105
           G G    +  R  G P +++   ++G  H+L +  N  V + G N+  QLG RGA     
Sbjct: 6   GAGSRGLQRRRTEGSPGAELLQAASGERHALLLLTNSLVHSCGENSRGQLGRRGA----P 61

Query: 106 TWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSR 165
            W+ P+ V+ L  +           S A+   G ++ WG    GQLG+G+       P +
Sbjct: 62  RWDLPEPVQALKTLKFDLVSCGKEHSLAVCHKGRVFAWGAGSEGQLGVGELKEINFTPRK 121

Query: 166 VEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSE 225
           +  L G KI++VS G  H+LA ++D ++F WG ++ G++G LGK   S P          
Sbjct: 122 ITTLNGIKIIQVSCGHYHSLALSKDSQVFSWGKNSHGQLG-LGKEFPSQP---------- 170

Query: 226 SDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVL 285
           S Q + S                            +EG+ +  +A G  HS  L   G  
Sbjct: 171 SPQRVRS----------------------------LEGIPLAQVAAGGAHSFALSLCGTS 202

Query: 286 LSCGSNVYGQL---GREKQDMGMFPVDI----NFHPVSISSGLGHSLAICEVRSSNVTGG 338
              GSN  GQL   GR  Q     P+ I    N   + IS G  H         + V   
Sbjct: 203 FGWGSNSAGQLALSGRNVQVQSNKPLSIGALKNLGVIYISCGDEH---------TAVLSQ 253

Query: 339 ARGIVSWGWNRSSQLGRM-GPDNV-PLVVEGLEG 370
              + ++G N S QLG    P+   P +VE ++G
Sbjct: 254 DGKVFTFGDNSSGQLGYSPTPEKRGPQLVERIDG 287


>gi|340370446|ref|XP_003383757.1| PREDICTED: RCC1 and BTB domain-containing protein 1-like
           [Amphimedon queenslandica]
          Length = 529

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 67/196 (34%), Positives = 104/196 (53%), Gaps = 11/196 (5%)

Query: 66  VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAF 125
           V+ V+ G +HSLA++N G V++WG NN  QLG G   SR    +P RV GL     C   
Sbjct: 131 VSKVACGGFHSLALSNKGDVYSWGFNNCGQLGCGDTTSRY---NPNRVTGLLDGKTCIHV 187

Query: 126 ASGVVSS-AIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHA 184
                SS A+  +G +  WG++  GQLG+G  + + + P  V+ +    I ++  G+ HA
Sbjct: 188 TCNHTSSFALTGEGEILSWGQNGSGQLGIGSTL-QQLQPVNVQ-INDAFIDQIVTGYSHA 245

Query: 185 LAQTEDGKLFGWGYSADGRIGNLGKALESSP-LDSNIDRSSESD----QEISSSTIEKAQ 239
           LA +E G ++ WG +  G++GN  K   SSP + +NI R+SE        IS++TI    
Sbjct: 246 LALSECGSIYAWGANTHGQLGNASKQCVSSPTIINNIGRASEVAAIHLSHISAATISGKV 305

Query: 240 KLVSEGMEKEKYMPII 255
            +  E   +    P++
Sbjct: 306 YIWGECCHQNVCAPLV 321



 Score = 81.6 bits (200), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 76/287 (26%), Positives = 124/287 (43%), Gaps = 52/287 (18%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPS-DVTSVSAG-HYHSLAVTNNGAVW 86
           + + G      LGL T +T      + P R+  L   +++S++ G   H LA+T +G ++
Sbjct: 42  LYAIGTNGNCCLGLGTPIT----PGFTPKRIESLKGLNISSIAYGSDPHVLALTEDGTIY 97

Query: 87  AWGRNNEVQLGRGALESRATWNDPKRV-EGLDQVNVCAAFASGVVSSAIGDDGSLWVWGK 145
           AWG N   QLGRG+    +  N PK V   L  V V      G  S A+ + G ++ WG 
Sbjct: 98  AWGANGYGQLGRGSTSVHS--NLPKPVNHALGGVIVSKVACGGFHSLALSNKGDVYSWGF 155

Query: 146 SKRGQLGLGKDITEAIVPSRVEALA-GEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRI 204
           +  GQLG G D T    P+RV  L  G+  + V+     + A T +G++  WG +  G++
Sbjct: 156 NNCGQLGCG-DTTSRYNPNRVTGLLDGKTCIHVTCNHTSSFALTGEGEILSWGQNGSGQL 214

Query: 205 GNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGV 264
           G          + S + +    + +I+ + I++                           
Sbjct: 215 G----------IGSTLQQLQPVNVQINDAFIDQ--------------------------- 237

Query: 265 EVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDIN 311
               I  G+ H+L L   G + + G+N +GQLG   +     P  IN
Sbjct: 238 ----IVTGYSHALALSECGSIYAWGANTHGQLGNASKQCVSSPTIIN 280



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 73/280 (26%), Positives = 113/280 (40%), Gaps = 33/280 (11%)

Query: 112 RVEGLDQVNVCAAF-ASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALA 170
           + E LD +     F  SG  +  +     L+  G +    LGLG  IT    P R+E+L 
Sbjct: 13  KAEFLDDIKWVTVFGPSGNEAILVTQSNELYAIGTNGNCCLGLGTPITPGFTPKRIESLK 72

Query: 171 GEKIVKVSFGWG-HALAQTEDGKLFGWGYSADGRIGNLGKALESS-PLDSN-----IDRS 223
           G  I  +++G   H LA TEDG ++ WG +  G++G    ++ S+ P   N     +  S
Sbjct: 73  GLNISSIAYGSDPHVLALTEDGTIYAWGANGYGQLGRGSTSVHSNLPKPVNHALGGVIVS 132

Query: 224 SESDQEISSSTIEKAQKLVSEGMEK----------EKYMPIIWEPFLVEGVEVVDIACGF 273
             +     S  +     + S G              +Y P      L++G   + + C  
Sbjct: 133 KVACGGFHSLALSNKGDVYSWGFNNCGQLGCGDTTSRYNPNRVTG-LLDGKTCIHVTCNH 191

Query: 274 DHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFHPV---SISSGLGHSLAICEV 330
             S  L   G +LS G N  GQLG       + PV++  +      I +G  H+LA+ E 
Sbjct: 192 TSSFALTGEGEILSWGQNGSGQLGIGSTLQQLQPVNVQINDAFIDQIVTGYSHALALSEC 251

Query: 331 RSSNVTGGARGIVSWGWNRSSQLGRMGPDNV--PLVVEGL 368
            S         I +WG N   QLG      V  P ++  +
Sbjct: 252 GS---------IYAWGANTHGQLGNASKQCVSSPTIINNI 282



 Score = 44.7 bits (104), Expect = 0.065,   Method: Compositional matrix adjust.
 Identities = 35/142 (24%), Positives = 69/142 (48%), Gaps = 12/142 (8%)

Query: 5   KSVVHNHVNVLTSRIFMRSASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPS 64
           K+ +H   N  +S  F  +  G  ++S+G    G LG+ ++L  +     +P  V    +
Sbjct: 182 KTCIHVTCNHTSS--FALTGEG-EILSWGQNGSGQLGIGSTLQQL-----QPVNVQINDA 233

Query: 65  DVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAA 124
            +  +  G+ H+LA++  G+++AWG N   QLG     S+   + P  +  + + +  AA
Sbjct: 234 FIDQIVTGYSHALALSECGSIYAWGANTHGQLGNA---SKQCVSSPTIINNIGRASEVAA 290

Query: 125 FASGVVSSAIGDDGSLWVWGKS 146
                +S+A    G +++WG+ 
Sbjct: 291 IHLSHISAAT-ISGKVYIWGEC 311


>gi|159037224|ref|YP_001536477.1| chromosome condensation regulator RCC1 [Salinispora arenicola
           CNS-205]
 gi|157916059|gb|ABV97486.1| regulator of chromosome condensation RCC1 [Salinispora arenicola
           CNS-205]
          Length = 558

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 101/315 (32%), Positives = 135/315 (42%), Gaps = 37/315 (11%)

Query: 62  LPSD--VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRG-ALESRATWNDPKRVEGLDQ 118
           LP D  VT+V+ G  HSLA+T+ GAV AWG NN  QLG G  L S      P  V     
Sbjct: 86  LPPDTTVTAVAGGDSHSLALTSAGAVLAWGENNFGQLGTGNNLNSSV----PITVALPPD 141

Query: 119 VNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVS 178
             V A  AS   S A+   G++  WG +  GQLG G     +  P  V    G  +  ++
Sbjct: 142 TTVVAIAASHGHSLALTSAGAVLAWGANNVGQLGNGNTF-NSNTPVTVNLPPGTTVATIA 200

Query: 179 FGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKA 238
            G  H+LA T  G    WG + +G++GN   A    P+   +  S+      + S+   A
Sbjct: 201 AGTNHSLAITSTGAALAWGGNGNGQLGNNSTATSLEPIAVTLPPSTTITAIAAGSSYSLA 260

Query: 239 --------------QKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGV 284
                            +  G   +  +PI     L  G  +  IA GF HSL +   G 
Sbjct: 261 ITSTGTALAWGGNSNGQLGTGNNADSLIPIAVA--LPPGTTITSIAAGFTHSLAVTSTGT 318

Query: 285 LLSCGSNVYGQLGREKQDMGMFPVDINFHP-VSISS---GLGHSLAICEVRSSNVTGGAR 340
            L+ G N  GQLG         PV +N  P  +I++   G  HSL       S  TG A 
Sbjct: 319 ALAWGGNSRGQLGIGTTTNSDTPVIVNLPPDTTITTNDGGFFHSLG------SMSTGAA- 371

Query: 341 GIVSWGWNRSSQLGR 355
             ++WG N S QLG 
Sbjct: 372 --LAWGNNFSGQLGT 384



 Score = 90.9 bits (224), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 78/286 (27%), Positives = 117/286 (40%), Gaps = 29/286 (10%)

Query: 85  VWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWG 144
           + AWG NN  QLG G+  +R   N P  V       V A       S A+   G++  WG
Sbjct: 59  ILAWGANNVGQLGDGSTIAR---NAPVAVSLPPDTTVTAVAGGDSHSLALTSAGAVLAWG 115

Query: 145 KSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRI 204
           ++  GQLG G ++  + VP  V       +V ++   GH+LA T  G +  WG +  G++
Sbjct: 116 ENNFGQLGTGNNLNSS-VPITVALPPDTTVVAIAASHGHSLALTSAGAVLAWGANNVGQL 174

Query: 205 GNLGKALESSPLDSN---------IDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPII 255
           GN      ++P+  N         I   +     I+S+    A      G          
Sbjct: 175 GNGNTFNSNTPVTVNLPPGTTVATIAAGTNHSLAITSTGAALAWGGNGNGQLGNNSTATS 234

Query: 256 WEPFLV---EGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINF 312
            EP  V       +  IA G  +SL +   G  L+ G N  GQLG       + P+ +  
Sbjct: 235 LEPIAVTLPPSTTITAIAAGSSYSLAITSTGTALAWGGNSNGQLGTGNNADSLIPIAVAL 294

Query: 313 HP----VSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLG 354
            P     SI++G  HSLA+    ++         ++WG N   QLG
Sbjct: 295 PPGTTITSIAAGFTHSLAVTSTGTA---------LAWGGNSRGQLG 331



 Score = 80.5 bits (197), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 91/361 (25%), Positives = 136/361 (37%), Gaps = 102/361 (28%)

Query: 28  AVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVT--SVSAGHYHSLAVTNNGAV 85
           AV+++G+ + G LG     TG   ++  P  V  LP D T  +++A H HSLA+T+ GAV
Sbjct: 110 AVLAWGENNFGQLG-----TGNNLNSSVPITV-ALPPDTTVVAIAASHGHSLALTSAGAV 163

Query: 86  WAWGRNNEVQLGRG---------------------------------------------- 99
            AWG NN  QLG G                                              
Sbjct: 164 LAWGANNVGQLGNGNTFNSNTPVTVNLPPGTTVATIAAGTNHSLAITSTGAALAWGGNGN 223

Query: 100 ---ALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKD 156
                 S AT  +P  V       + A  A    S AI   G+   WG +  GQLG G +
Sbjct: 224 GQLGNNSTATSLEPIAVTLPPSTTITAIAAGSSYSLAITSTGTALAWGGNSNGQLGTGNN 283

Query: 157 ITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPL 216
             ++++P  V    G  I  ++ G+ H+LA T  G    WG ++ G++G           
Sbjct: 284 -ADSLIPIAVALPPGTTITSIAAGFTHSLAVTSTGTALAWGGNSRGQLG----------- 331

Query: 217 DSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHS 276
              I  ++ SD  +  +         ++G                          GF HS
Sbjct: 332 ---IGTTTNSDTPVIVNLPPDTTITTNDG--------------------------GFFHS 362

Query: 277 LVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFHP----VSISSGLGHSLAICEVRS 332
           L     G  L+ G+N  GQLG       + P+ +         +I++G GHSLA+    +
Sbjct: 363 LGSMSTGAALAWGNNFSGQLGTGNNTNSLDPIAVALPSGTKITTIAAGGGHSLALVAPPT 422

Query: 333 S 333
           S
Sbjct: 423 S 423



 Score = 62.8 bits (151), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 59/168 (35%), Positives = 84/168 (50%), Gaps = 17/168 (10%)

Query: 23  SASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLP--SDVTSVSAGHYHSLAVT 80
           +++GTA+ ++G  S G LG     TG   D+  P  V  LP  + +TS++AG  HSLAVT
Sbjct: 262 TSTGTAL-AWGGNSNGQLG-----TGNNADSLIPIAV-ALPPGTTITSIAAGFTHSLAVT 314

Query: 81  NNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGD--DG 138
           + G   AWG N+  QLG G      T +D   +  L           G   S +G    G
Sbjct: 315 STGTALAWGGNSRGQLGIG----TTTNSDTPVIVNLPPDTTITTNDGGFFHS-LGSMSTG 369

Query: 139 SLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALA 186
           +   WG +  GQLG G + T ++ P  V   +G KI  ++ G GH+LA
Sbjct: 370 AALAWGNNFSGQLGTGNN-TNSLDPIAVALPSGTKITTIAAGGGHSLA 416


>gi|449270679|gb|EMC81336.1| putative E3 ubiquitin-protein ligase HERC3 [Columba livia]
          Length = 1050

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 80/306 (26%), Positives = 137/306 (44%), Gaps = 48/306 (15%)

Query: 28  AVVSFGDGSQGALGLPTS-LTGVGGDAYEPTRVPGLP-SDVTSVSAGHYHSLAVTNNGAV 85
           +V    DG     GL T    G   +  +P ++  L    +  V+ G  HSLA+++ G +
Sbjct: 46  SVFLLEDGEVYTCGLNTKGQLGHDCEGSKPEQIGALAGQHIVHVACGESHSLALSDQGQL 105

Query: 86  WAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGK 145
           ++WG  ++ QLG   +E   T   P+ ++ L+Q  +           A+  DG  + WG+
Sbjct: 106 FSWGAGSDGQLGLTTIEDAVTV--PRLIKKLNQQTILQVSCGNWHCLALAADGQFFTWGQ 163

Query: 146 SKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIG 205
           +  GQLGLGK+      P RV++L G  + +V+ G  H+ A +  G +FGWG ++ G++G
Sbjct: 164 NSYGQLGLGKECPSQASPQRVKSLDGIPLAQVAAGGAHSFALSLSGAVFGWGKNSSGQLG 223

Query: 206 NLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVE 265
              +    SP    + RS                                         +
Sbjct: 224 LSDERDRESPCHVKLLRSQ----------------------------------------K 243

Query: 266 VVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFP---VDINFHPVS-ISSGL 321
           VV I+CG +H+ VL ++G + + G+   GQLG +  +  + P   +++    VS I+ G 
Sbjct: 244 VVYISCGEEHTAVLTKSGGVFTFGAGSCGQLGHDSMNDEVNPRRVLELMGSEVSQIACGR 303

Query: 322 GHSLAI 327
            H+LA 
Sbjct: 304 HHTLAF 309



 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 77/292 (26%), Positives = 125/292 (42%), Gaps = 69/292 (23%)

Query: 87  AWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKS 146
            WG ++  Q G G+   +    +P+    +   NV      G  S  + +DG ++  G +
Sbjct: 3   CWGYSSFGQPGIGS-NIQVIVPEPQVYGFIHDRNVKEVACGGNHSVFLLEDGEVYTCGLN 61

Query: 147 KRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGN 206
            +GQLG      E   P ++ ALAG+ IV V+ G  H+LA ++ G+LF WG  +DG++G 
Sbjct: 62  TKGQLGHD---CEGSKPEQIGALAGQHIVHVACGESHSLALSDQGQLFSWGAGSDGQLG- 117

Query: 207 LGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVE- 265
                                     +TIE A                +  P L++ +  
Sbjct: 118 -------------------------LTTIEDA----------------VTVPRLIKKLNQ 136

Query: 266 --VVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREK----QDMGMFPVDINFHPVS-IS 318
             ++ ++CG  H L L  +G   + G N YGQLG  K    Q        ++  P++ ++
Sbjct: 137 QTILQVSCGNWHCLALAADGQFFTWGQNSYGQLGLGKECPSQASPQRVKSLDGIPLAQVA 196

Query: 319 SGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLG------RMGPDNVPLV 364
           +G  HS A+      +++G   G   WG N S QLG      R  P +V L+
Sbjct: 197 AGGAHSFAL------SLSGAVFG---WGKNSSGQLGLSDERDRESPCHVKLL 239



 Score = 41.6 bits (96), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 34/120 (28%), Positives = 56/120 (46%), Gaps = 18/120 (15%)

Query: 260 LVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINF----HPV 315
            +    V ++ACG +HS+ L  +G + +CG N  GQLG + +  G  P  I      H V
Sbjct: 30  FIHDRNVKEVACGGNHSVFLLEDGEVYTCGLNTKGQLGHDCE--GSKPEQIGALAGQHIV 87

Query: 316 SISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPDN---VPLVVEGLEGES 372
            ++ G  HSLA+ +            + SWG     QLG    ++   VP +++ L  ++
Sbjct: 88  HVACGESHSLALSD---------QGQLFSWGAGSDGQLGLTTIEDAVTVPRLIKKLNQQT 138


>gi|337746644|ref|YP_004640806.1| BNR repeat-containing protein [Paenibacillus mucilaginosus KNP414]
 gi|336297833|gb|AEI40936.1| BNR repeat domain protein [Paenibacillus mucilaginosus KNP414]
          Length = 691

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 85/288 (29%), Positives = 132/288 (45%), Gaps = 49/288 (17%)

Query: 49  VGGDAYE------PTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALE 102
           +G D Y+      P +V GL S V ++SA   H+LA+ ++G VWAWG NN  QLG G   
Sbjct: 118 LGEDPYKTSWRLTPVQVQGL-SSVVAISANFSHNLALKSDGTVWAWGMNNAGQLGNGTTS 176

Query: 103 SRAT-WNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAI 161
              T +  P +V+GLD V   AA      S A+  DG+LW WG       GL  D T   
Sbjct: 177 DMYTSFYTPSQVQGLDSVIAVAAGPG--TSLALKSDGTLWAWG-------GLVGDGTTES 227

Query: 162 VPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNID 221
             + V+A     +V    G    + ++ DG ++ WG++  G++G+       +P+     
Sbjct: 228 RSTPVQAQGLSSVVSFDAGDSRFVVKS-DGTVWAWGWNGYGQLGDGTTTTRYTPVPL--- 283

Query: 222 RSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWE------------------PFLVEG 263
                 QE+SS     A +  S  ++ +     +WE                  P  V+ 
Sbjct: 284 ------QELSSVAAFAADEWHSLALKSDG---TVWEWGCNSKGEMCYESDIRTTPVQVQD 334

Query: 264 V-EVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDI 310
           +   VDIA GF+HSL +  +G + + G+N YGQ+G   +     P+ +
Sbjct: 335 LSSAVDIAAGFEHSLAVKSDGTVWAWGNNGYGQMGDAARTYHSTPIQV 382



 Score = 87.0 bits (214), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 81/262 (30%), Positives = 126/262 (48%), Gaps = 30/262 (11%)

Query: 64  SDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCA 123
           S VT V+AG +HSLA+  +G VWAWG+++   LG G   S AT   P +V+ L++V   A
Sbjct: 39  SGVTMVAAGRFHSLALKEDGTVWAWGKDS---LGNGTPYSSAT---PVQVKDLEEVVTVA 92

Query: 124 AFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITE-AIVPSRVEALAGEKIVKVSFGWG 182
             A G  S A+  DG++W WG+++ G LG     T   + P +V+ L+   +V +S  + 
Sbjct: 93  --AGGNHSLALKSDGTVWAWGQNEYGVLGEDPYKTSWRLTPVQVQGLS--SVVAISANFS 148

Query: 183 HALAQTEDGKLFGWGYSADGRIGN---------LGKALESSPLDSNIDRSSESDQEI--- 230
           H LA   DG ++ WG +  G++GN              +   LDS I  ++     +   
Sbjct: 149 HNLALKSDGTVWAWGMNNAGQLGNGTTSDMYTSFYTPSQVQGLDSVIAVAAGPGTSLALK 208

Query: 231 SSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGV-EVVDIACGFDHSLVLGRNGVLLSCG 289
           S  T+     LV +G  + +  P+       +G+  VV    G D   V+  +G + + G
Sbjct: 209 SDGTLWAWGGLVGDGTTESRSTPV-----QAQGLSSVVSFDAG-DSRFVVKSDGTVWAWG 262

Query: 290 SNVYGQLGREKQDMGMFPVDIN 311
            N YGQLG         PV + 
Sbjct: 263 WNGYGQLGDGTTTTRYTPVPLQ 284



 Score = 44.3 bits (103), Expect = 0.089,   Method: Compositional matrix adjust.
 Identities = 32/92 (34%), Positives = 45/92 (48%), Gaps = 7/92 (7%)

Query: 265 EVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFHPVSISSGLGHS 324
           EVV +A G +HSL L  +G + + G N YG LG +      +       PV +  GL   
Sbjct: 87  EVVTVAAGGNHSLALKSDGTVWAWGQNEYGVLGEDP-----YKTSWRLTPVQV-QGLSSV 140

Query: 325 LAICEVRSSNVTGGARGIV-SWGWNRSSQLGR 355
           +AI    S N+   + G V +WG N + QLG 
Sbjct: 141 VAISANFSHNLALKSDGTVWAWGMNNAGQLGN 172


>gi|403222935|dbj|BAM41066.1| chromosome condensation protein [Theileria orientalis strain
            Shintoku]
          Length = 2619

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 79/265 (29%), Positives = 128/265 (48%), Gaps = 29/265 (10%)

Query: 55   EPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVE 114
            EP       S ++ ++ G  HSLA+T NG ++ WG N+  QLG+G L SR   +    +E
Sbjct: 1466 EPMLFNHFSSKISKIACGSNHSLAITVNGLLFTWGCNDNGQLGQGDLRSRVIPDHVPYIE 1525

Query: 115  GLDQVNVCAAF-ASGVVSSAIGDD------GSLWVWGKSKRGQLGLGKDITEAIV-PSRV 166
                +NV A    SG + S+  +D      G+LWV+G S  G+LGLG+ +T  ++ P  +
Sbjct: 1526 NC--INVFAGVDNSGCICSSNHEDFMKDDYGTLWVFGSSSCGKLGLGEALTSTVMTPREI 1583

Query: 167  EALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRI--GNLGKALESSPLDSNIDRSS 224
              + G  + K++ G  H++  T +G L+  G    GR+  G+       +P+ + +    
Sbjct: 1584 TTVTG--VYKLALGTMHSVVLTHEGSLYSAGAGTGGRLGTGDTSNYFVFTPVKTEVKFVD 1641

Query: 225  ESDQEISSSTIEKAQKLVSEGMEK-----EKYMPIIWEPFLVEGV-------EVVDIACG 272
                   S  I    +L   G  K     EK+   + EP L+E +       +V+     
Sbjct: 1642 VCAGSSHSLAISVDNELYGWGEGKYICSDEKH---VLEPTLMEVIPSPTGEAKVISAVAA 1698

Query: 273  FDHSLVLGRNGVLLSCGSNVYGQLG 297
             +HSLVL  +G + + G+N YGQLG
Sbjct: 1699 GNHSLVLTNSGYVAAFGNNTYGQLG 1723



 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 64/197 (32%), Positives = 100/197 (50%), Gaps = 19/197 (9%)

Query: 28   AVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSD---VTSVSAGHYHSLAVTNNGA 84
             V S+G G+ G LG     TG   + Y P +V   PSD   ++   AG  HS+A+   G 
Sbjct: 1147 CVYSWGMGAYGVLG-----TGSVANRYNPVKV-VFPSDNIFISKCCAGSRHSMALDKEGN 1200

Query: 85   VWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWG 144
            VW+WG     +LG G+  +  T   P  +   D   V         S+ +   G+++ WG
Sbjct: 1201 VWSWGYGGNGRLGLGSTRNYYT---PNLIRIFDTYEVFQISCGDSHSACLDRFGTVYTWG 1257

Query: 145  KSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRI 204
              + G+LGLGK +++ + P+ VE+L G  I++++ G G+ LA +  GK++ WG +     
Sbjct: 1258 CCRGGKLGLGKIVSDVLEPAVVESLKGTHIIQIACGTGNTLALSASGKIYQWGCT----- 1312

Query: 205  GNLGKALESSPLDSNID 221
              LG   +S  L SNID
Sbjct: 1313 --LGFNKQSEGLISNID 1327



 Score = 72.8 bits (177), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 96/371 (25%), Positives = 150/371 (40%), Gaps = 82/371 (22%)

Query: 11   HVNVLTSRIFMRSASGTAVVSFGDGSQGALGLPTSLTG------VGG-DAYEP---TRVP 60
            H  VL S       +GT V +FG G+ G LG             +G  D  EP   T  P
Sbjct: 1058 HSAVLVSSSKQHPNAGT-VFTFGLGNSGRLGYHIDTNSDVLSQQIGTEDKDEPSWCTHTP 1116

Query: 61   -------GLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRV 113
                   GL + + S++ G  H+L  T +G V++WG      LG G++ +R  +N  K V
Sbjct: 1117 QPVGLSIGLRNAIVSIACGANHTLVTTVDGCVYSWGMGAYGVLGTGSVANR--YNPVKVV 1174

Query: 114  EGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEK 173
               D + +    A    S A+  +G++W WG    G+LGLG        P+ +      +
Sbjct: 1175 FPSDNIFISKCCAGSRHSMALDKEGNVWSWGYGGNGRLGLGS-TRNYYTPNLIRIFDTYE 1233

Query: 174  IVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSS 233
            + ++S G  H+      G ++ WG    G++G LG                         
Sbjct: 1234 VFQISCGDSHSACLDRFGTVYTWGCCRGGKLG-LG------------------------- 1267

Query: 234  TIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVY 293
                  K+VS+ +E     P + E   ++G  ++ IACG  ++L L  +G +   G    
Sbjct: 1268 ------KIVSDVLE-----PAVVES--LKGTHIIQIACGTGNTLALSASGKIYQWGCT-- 1312

Query: 294  GQLGREKQDMGMF--------PV-DINFHPVSISSGLGHSLAICEVRSSNVTGGARGIVS 344
              LG  KQ  G+         PV D  F  V I++G     AI      N+ G    +++
Sbjct: 1313 --LGFNKQSEGLISNIDYVPQPVPDTGFKNVFIAAGPYSCAAI------NIFG---DLLT 1361

Query: 345  WGWNRSSQLGR 355
            WG     +LG 
Sbjct: 1362 WGLGTGYRLGH 1372



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 64/231 (27%), Positives = 103/231 (44%), Gaps = 28/231 (12%)

Query: 20   FMRSASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAV 79
            FM+   GT  V FG  S G LGL  +LT       E T V G    V  ++ G  HS+ +
Sbjct: 1548 FMKDDYGTLWV-FGSSSCGKLGLGEALTSTVMTPREITTVTG----VYKLALGTMHSVVL 1602

Query: 80   TNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGS 139
            T+ G++++ G     +LG G   +   +  P + E +  V+VCA  +    S AI  D  
Sbjct: 1603 THEGSLYSAGAGTGGRLGTGDTSNYFVFT-PVKTE-VKFVDVCAGSSH---SLAISVDNE 1657

Query: 140  LWVWGKSKRGQLGLGKDITEAIVPSRVEAL---AGE-KIVKVSFGWGHALAQTEDGKLFG 195
            L+ WG+ K     +  D    + P+ +E +    GE K++       H+L  T  G +  
Sbjct: 1658 LYGWGEGKY----ICSDEKHVLEPTLMEVIPSPTGEAKVISAVAAGNHSLVLTNSGYVAA 1713

Query: 196  WGYSADGRIG----------NLGKALESSPLDSNIDRSSESDQEISSSTIE 236
            +G +  G++G          N  K   +  LD+N+   + S    S ST++
Sbjct: 1714 FGNNTYGQLGVQLSIKSSANNFIKMPSTVNLDANVTCIATSRYFSSCSTLK 1764



 Score = 48.1 bits (113), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 83/325 (25%), Positives = 124/325 (38%), Gaps = 51/325 (15%)

Query: 54   YEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRG------------AL 101
            Y P  VP        ++AG Y   A+   G +  WG     +LG G             L
Sbjct: 1328 YVPQPVPDTGFKNVFIAAGPYSCAAINIFGDLLTWGLGTGYRLGHGDSKDHVAPKFVSHL 1387

Query: 102  ESRATWN------DPKRVEGLDQVNVCAAFASG---VVSSAIGD--------DGSLWVWG 144
             +R   +      D   +E  D V   A  A     +   A+GD        +G+++ WG
Sbjct: 1388 RTRIYIDTLLKVYDETPMELQDNVKAGATNAHDEKRIQQIAVGDGHGVLLTCNGTVYTWG 1447

Query: 145  KSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRI 204
             +        KD  E+     +      KI K++ G  H+LA T +G LF WG + +G++
Sbjct: 1448 VNNGTGYNSTKDQIESYSEPMLFNHFSSKISKIACGSNHSLAITVNGLLFTWGCNDNGQL 1507

Query: 205  GNLGKALESSP-----LDSNIDRSSESDQE--ISSSTIEKAQK--------LVSEGMEK- 248
            G         P     +++ I+  +  D    I SS  E   K          S    K 
Sbjct: 1508 GQGDLRSRVIPDHVPYIENCINVFAGVDNSGCICSSNHEDFMKDDYGTLWVFGSSSCGKL 1567

Query: 249  ---EKYMPIIWEPFLVEGVE-VVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGR-EKQDM 303
               E     +  P  +  V  V  +A G  HS+VL   G L S G+   G+LG  +  + 
Sbjct: 1568 GLGEALTSTVMTPREITTVTGVYKLALGTMHSVVLTHEGSLYSAGAGTGGRLGTGDTSNY 1627

Query: 304  GMF-PVDINFHPVSISSGLGHSLAI 327
             +F PV      V + +G  HSLAI
Sbjct: 1628 FVFTPVKTEVKFVDVCAGSSHSLAI 1652



 Score = 46.6 bits (109), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 53/205 (25%), Positives = 86/205 (41%), Gaps = 39/205 (19%)

Query: 139  SLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALA-------QTEDG 191
            +++ WGK     LG G D++ +  P  +   +G KI +V+ G  H+             G
Sbjct: 1014 NVYSWGKVPFNCLGQGVDVSTSEYPKIIPFFSGRKIAQVACGDYHSAVLVSSSKQHPNAG 1073

Query: 192  KLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKY 251
             +F +G    GR+G          +D+N D  S              Q++ +E  ++  +
Sbjct: 1074 TVFTFGLGNSGRLG--------YHIDTNSDVLS--------------QQIGTEDKDEPSW 1111

Query: 252  MPIIWEPF-LVEGVE--VVDIACGFDHSLVLGRNGVLLSCGSNVYGQLG------REKQD 302
                 +P  L  G+   +V IACG +H+LV   +G + S G   YG LG      R    
Sbjct: 1112 CTHTPQPVGLSIGLRNAIVSIACGANHTLVTTVDGCVYSWGMGAYGVLGTGSVANRYNPV 1171

Query: 303  MGMFPVDINFHPVSISSGLGHSLAI 327
              +FP D N       +G  HS+A+
Sbjct: 1172 KVVFPSD-NIFISKCCAGSRHSMAL 1195



 Score = 44.7 bits (104), Expect = 0.070,   Method: Compositional matrix adjust.
 Identities = 74/324 (22%), Positives = 126/324 (38%), Gaps = 66/324 (20%)

Query: 57   TRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRV--- 113
            T+V   PS       G  H+++  N   V++WG+     LG+G   S + +  PK +   
Sbjct: 990  TKVTNPPSSSRRTKDGAKHTVSHLN---VYSWGKVPFNCLGQGVDVSTSEY--PKIIPFF 1044

Query: 114  --EGLDQVNVCAAFASGVVSSAIG---DDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEA 168
                + QV  C  + S V+ S+     + G+++ +G    G+LG   D    ++  ++  
Sbjct: 1045 SGRKIAQV-ACGDYHSAVLVSSSKQHPNAGTVFTFGLGNSGRLGYHIDTNSDVLSQQIGT 1103

Query: 169  LAGEK--------------------IVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLG 208
               ++                    IV ++ G  H L  T DG ++ WG  A G +G   
Sbjct: 1104 EDKDEPSWCTHTPQPVGLSIGLRNAIVSIACGANHTLVTTVDGCVYSWGMGAYGVLGTGS 1163

Query: 209  KALESSPLD-----SNIDRSSESDQEISSSTIEKAQKL----------VSEGMEKEKYMP 253
             A   +P+       NI  S        S  ++K   +          +  G  +  Y P
Sbjct: 1164 VANRYNPVKVVFPSDNIFISKCCAGSRHSMALDKEGNVWSWGYGGNGRLGLGSTRNYYTP 1223

Query: 254  IIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDI--- 310
             +   F  +  EV  I+CG  HS  L R G + + G    G+LG     +G    D+   
Sbjct: 1224 NLIRIF--DTYEVFQISCGDSHSACLDRFGTVYTWGCCRGGKLG-----LGKIVSDVLEP 1276

Query: 311  -------NFHPVSISSGLGHSLAI 327
                     H + I+ G G++LA+
Sbjct: 1277 AVVESLKGTHIIQIACGTGNTLAL 1300



 Score = 41.6 bits (96), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 39/110 (35%), Positives = 56/110 (50%), Gaps = 14/110 (12%)

Query: 55   EPTRVPGLPSD------VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWN 108
            EPT +  +PS       +++V+AG+ HSL +TN+G V A+G N   QLG   L  +++ N
Sbjct: 1676 EPTLMEVIPSPTGEAKVISAVAAGN-HSLVLTNSGYVAAFGNNTYGQLGV-QLSIKSSAN 1733

Query: 109  D----PKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLG 154
            +    P  V  LD    C A  S   SS     G  + WG S   +LG+G
Sbjct: 1734 NFIKMPSTV-NLDANVTCIA-TSRYFSSCSTLKGDAYSWGLSSDDRLGVG 1781



 Score = 41.2 bits (95), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 37/146 (25%), Positives = 62/146 (42%), Gaps = 17/146 (11%)

Query: 69   VSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLD----QVNVCAA 124
            V AG  HSLA++ +  ++ WG       G+          +P  +E +     +  V +A
Sbjct: 1642 VCAGSSHSLAISVDNELYGWGE------GKYICSDEKHVLEPTLMEVIPSPTGEAKVISA 1695

Query: 125  FASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAI-----VPSRVEALAGEKIVKVSF 179
             A+G  S  + + G +  +G +  GQLG+   I  +      +PS V   A    +  S 
Sbjct: 1696 VAAGNHSLVLTNSGYVAAFGNNTYGQLGVQLSIKSSANNFIKMPSTVNLDANVTCIATSR 1755

Query: 180  GWGHALAQTEDGKLFGWGYSADGRIG 205
             +      T  G  + WG S+D R+G
Sbjct: 1756 YFSSC--STLKGDAYSWGLSSDDRLG 1779



 Score = 38.1 bits (87), Expect = 7.8,   Method: Compositional matrix adjust.
 Identities = 26/98 (26%), Positives = 47/98 (47%), Gaps = 8/98 (8%)

Query: 10   NHVNVLTSRIFMRSASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSV 69
            NH  VLT+       SG  V +FG+ + G LG+  S+     +  +      L ++VT +
Sbjct: 1700 NHSLVLTN-------SG-YVAAFGNNTYGQLGVQLSIKSSANNFIKMPSTVNLDANVTCI 1751

Query: 70   SAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATW 107
            +   Y S   T  G  ++WG +++ +LG G   ++  +
Sbjct: 1752 ATSRYFSSCSTLKGDAYSWGLSSDDRLGVGFTNNKVVY 1789


>gi|224093583|ref|XP_002309939.1| predicted protein [Populus trichocarpa]
 gi|222852842|gb|EEE90389.1| predicted protein [Populus trichocarpa]
          Length = 444

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 94/352 (26%), Positives = 147/352 (41%), Gaps = 104/352 (29%)

Query: 57  TRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGL 116
           + V G    V  +SAG  HS+A+ +   V +WGR  + QLG G  E R T      ++GL
Sbjct: 11  SEVSGPIRQVILISAGASHSVALLSGNIVCSWGRGEDGQLGHGDAEDRPTPTQLSTLDGL 70

Query: 117 DQVNV-CAAFASGVVSS-----------------------------------------AI 134
           D +++ C A  +   S                                          A 
Sbjct: 71  DIISITCGADHTTSYSESRMEVYSWGWGDFGRLGHGNSSDLFTPQPIKALHSLKIRQIAC 130

Query: 135 GD--------DGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALA 186
           GD        DG +  WG+++ GQLGLG    +++VP +++A  G  I  V+ G  H  A
Sbjct: 131 GDSHCLAVTMDGEVQSWGRNQNGQLGLGT-TEDSLVPQKIQAFQGVSIKMVAAGAEHTAA 189

Query: 187 QTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGM 246
            TEDG+L+GWG+   GR GNLG                           ++  +LV E +
Sbjct: 190 VTEDGELYGWGW---GRYGNLGLG-------------------------DRNDRLVPEKV 221

Query: 247 EKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMF 306
                        LV G +++ +ACG+ H++ +  +G L + G + YGQLG    +  + 
Sbjct: 222 S------------LVNGDKMIMVACGWRHTISVSSSGGLYTYGWSKYGQLGHGDFEDHLT 269

Query: 307 PVDI----NFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLG 354
           P  +    + +   IS G  H++A+      N+ G       WGWN+  Q+G
Sbjct: 270 PHKVEALRDSYISMISGGWRHTMAL--TSDGNLYG-------WGWNKFGQVG 312



 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 85/328 (25%), Positives = 123/328 (37%), Gaps = 98/328 (29%)

Query: 23  SASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPS-DVTSVSAGHYHSLAVTN 81
           S S   V S+G G  G LG      G   D + P  +  L S  +  ++ G  H LAVT 
Sbjct: 86  SESRMEVYSWGWGDFGRLG-----HGNSSDLFTPQPIKALHSLKIRQIACGDSHCLAVTM 140

Query: 82  NGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLW 141
           +G V +WGRN   QLG G  E       P++++    V++    A    ++A+ +DG L+
Sbjct: 141 DGEVQSWGRNQNGQLGLGTTEDSLV---PQKIQAFQGVSIKMVAAGAEHTAAVTEDGELY 197

Query: 142 VWGKSKRGQLGLGK---------------------------------------------- 155
            WG  + G LGLG                                               
Sbjct: 198 GWGWGRYGNLGLGDRNDRLVPEKVSLVNGDKMIMVACGWRHTISVSSSGGLYTYGWSKYG 257

Query: 156 -----DITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKA 210
                D  + + P +VEAL    I  +S GW H +A T DG L+GWG++  G++G     
Sbjct: 258 QLGHGDFEDHLTPHKVEALRDSYISMISGGWRHTMALTSDGNLYGWGWNKFGQVG----- 312

Query: 211 LESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIA 270
                +  NID  S    +      E+A  LV                          I+
Sbjct: 313 -----VGDNIDHCSPVQVKFPH---EQAHSLVQ-------------------------IS 339

Query: 271 CGFDHSLVLGRNGVLLSCGSNVYGQLGR 298
           CG+ H+L +     + S G    GQLG 
Sbjct: 340 CGWRHTLAITERQNVFSWGRGTNGQLGH 367


>gi|403263467|ref|XP_003924053.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC6 isoform 1
           [Saimiri boliviensis boliviensis]
          Length = 1024

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 79/274 (28%), Positives = 125/274 (45%), Gaps = 45/274 (16%)

Query: 25  SGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTR-VPGLPSDVTSVSAGHYHSLAVTNNG 83
           + + V S G+ S+G LG          D  EP + +  L  D+  VS G  HSLAV + G
Sbjct: 40  TNSLVHSCGENSRGQLG---RRGAPRWDLPEPVQALKTLKFDL--VSCGKEHSLAVCHKG 94

Query: 84  AVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVW 143
            V+AWG  +E QLG G L  +     P+++  L+ + +         S A+  D  ++ W
Sbjct: 95  RVFAWGAGSEGQLGVGEL--KEINFTPRKITTLNGIKIIQVSCGHYHSLALSKDSQVFSW 152

Query: 144 GKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGR 203
           GK+  GQLGLGK+      P RV +L G  + +V+ G  H+ A +  G  FGWG ++ G+
Sbjct: 153 GKNSHGQLGLGKEFPSQPSPQRVRSLEGIPLAQVAAGGAHSFALSLCGTSFGWGSNSAGQ 212

Query: 204 IGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEG 263
           +   G+         N+   S     I +                            ++ 
Sbjct: 213 LALSGR---------NVQVQSNKPLSIGA----------------------------LKN 235

Query: 264 VEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLG 297
           + V+ I+CG +H+ VL ++G + + G N  GQLG
Sbjct: 236 LGVIYISCGDEHTAVLSQDGKVFTFGDNSSGQLG 269



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 93/334 (27%), Positives = 140/334 (41%), Gaps = 63/334 (18%)

Query: 48  GVGGDAYEPTRVPGLP-SDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLG-RGALESRA 105
           G G    +  R  G P +++   ++G  H+L +  N  V + G N+  QLG RGA     
Sbjct: 6   GAGSRGLQRRRTEGSPGAELLQAASGERHALLLLTNSLVHSCGENSRGQLGRRGA----P 61

Query: 106 TWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSR 165
            W+ P+ V+ L  +           S A+   G ++ WG    GQLG+G+       P +
Sbjct: 62  RWDLPEPVQALKTLKFDLVSCGKEHSLAVCHKGRVFAWGAGSEGQLGVGELKEINFTPRK 121

Query: 166 VEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSE 225
           +  L G KI++VS G  H+LA ++D ++F WG ++ G++G LGK   S P          
Sbjct: 122 ITTLNGIKIIQVSCGHYHSLALSKDSQVFSWGKNSHGQLG-LGKEFPSQP---------- 170

Query: 226 SDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVL 285
           S Q + S                            +EG+ +  +A G  HS  L   G  
Sbjct: 171 SPQRVRS----------------------------LEGIPLAQVAAGGAHSFALSLCGTS 202

Query: 286 LSCGSNVYGQL---GREKQDMGMFPVDI----NFHPVSISSGLGHSLAICEVRSSNVTGG 338
              GSN  GQL   GR  Q     P+ I    N   + IS G  H         + V   
Sbjct: 203 FGWGSNSAGQLALSGRNVQVQSNKPLSIGALKNLGVIYISCGDEH---------TAVLSQ 253

Query: 339 ARGIVSWGWNRSSQLGRM-GPDNV-PLVVEGLEG 370
              + ++G N S QLG    P+   P +VE ++G
Sbjct: 254 DGKVFTFGDNSSGQLGYSPTPEKRGPQLVERIDG 287


>gi|337749002|ref|YP_004643164.1| hypothetical protein KNP414_04764 [Paenibacillus mucilaginosus
           KNP414]
 gi|336300191|gb|AEI43294.1| hypothetical protein KNP414_04764 [Paenibacillus mucilaginosus
           KNP414]
          Length = 388

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 89/259 (34%), Positives = 126/259 (48%), Gaps = 28/259 (10%)

Query: 52  DAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPK 111
           D   P +V GL S V ++ AG  HSLAV  +G+VWAWG N   QLG G  +SR+T   P 
Sbjct: 119 DRLTPVQVQGLHS-VVALEAGSSHSLAVKADGSVWAWGWNTYGQLGDGTTDSRST---PV 174

Query: 112 RVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAG 171
           +V+ LD V V  A  SG  S A+  DGS+W WG +  GQLG G   TE+ VP +V  L  
Sbjct: 175 QVQALDSV-VAVAAGSG-HSLAVKADGSVWAWGANWSGQLGDGT-YTESTVPVQVTGLG- 230

Query: 172 EKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALES-SPLD------------- 217
             +V VS G   + A   DG ++ WG +  G++G+   A  S SP+              
Sbjct: 231 -SVVSVSAGNTFSSALKSDGTVWAWGANDSGQLGSETAASNSPSPVQVTGMASAAAISSG 289

Query: 218 SNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSL 277
           S+   + ++D  + +     + +L   G       P+     +     VV +A G  H L
Sbjct: 290 SDYSLALKNDGTVWAWGYNSSGQL-GNGTTTSSSAPVQ----VTRLGSVVSVAAGPLHGL 344

Query: 278 VLGRNGVLLSCGSNVYGQL 296
            +   G +   G+N YGQL
Sbjct: 345 AVQSGGTVWDWGNNTYGQL 363



 Score = 87.8 bits (216), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 89/303 (29%), Positives = 130/303 (42%), Gaps = 60/303 (19%)

Query: 66  VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAF 125
           V + + G  HSL +  +G VWAWG N+  QLG G    R +   P  V+ LD  +V    
Sbjct: 32  VEAAAGGTGHSLFLQKDGTVWAWGANSNAQLGDGTKTDRYS---PIPVKNLD--SVIGIS 86

Query: 126 ASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHAL 185
           A G  S A+  DG+ W WG +  GQLG G    + + P +V+ L    +V +  G  H+L
Sbjct: 87  AGGAASFAVRSDGTAWAWGSNLFGQLGDGTTY-DRLTPVQVQGL--HSVVALEAGSSHSL 143

Query: 186 AQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEG 245
           A   DG ++ WG++  G++G           D   D         S ST  + Q L S  
Sbjct: 144 AVKADGSVWAWGWNTYGQLG-----------DGTTD---------SRSTPVQVQALDS-- 181

Query: 246 MEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGM 305
                               VV +A G  HSL +  +G + + G+N  GQLG        
Sbjct: 182 --------------------VVAVAAGSGHSLAVKADGSVWAWGANWSGQLGDGTYTEST 221

Query: 306 FPVDINFHPVSISSGLGHSLAICEVRSSNVTGGARGIV-SWGWNRSSQLG-RMGPDNVPL 363
            PV +        +GLG  +++    + +    + G V +WG N S QLG      N P 
Sbjct: 222 VPVQV--------TGLGSVVSVSAGNTFSSALKSDGTVWAWGANDSGQLGSETAASNSPS 273

Query: 364 VVE 366
            V+
Sbjct: 274 PVQ 276



 Score = 70.5 bits (171), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 67/197 (34%), Positives = 99/197 (50%), Gaps = 11/197 (5%)

Query: 11  HVNVLTSRIFMRSASGTAVVSFGDGSQGALGLPTSLT---GVGGDAYEPTRVPGLPSDVT 67
            V  L S + + + SG ++    DGS  A G   S     G   ++  P +V GL S V 
Sbjct: 175 QVQALDSVVAVAAGSGHSLAVKADGSVWAWGANWSGQLGDGTYTESTVPVQVTGLGS-VV 233

Query: 68  SVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFAS 127
           SVSAG+  S A+ ++G VWAWG N+  QLG    E+ A+ N P  V+     +  A  + 
Sbjct: 234 SVSAGNTFSSALKSDGTVWAWGANDSGQLGS---ETAAS-NSPSPVQVTGMASAAAISSG 289

Query: 128 GVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQ 187
              S A+ +DG++W WG +  GQLG G   T +  P +V  L    +V V+ G  H LA 
Sbjct: 290 SDYSLALKNDGTVWAWGYNSSGQLGNGT-TTSSSAPVQVTRLG--SVVSVAAGPLHGLAV 346

Query: 188 TEDGKLFGWGYSADGRI 204
              G ++ WG +  G++
Sbjct: 347 QSGGTVWDWGNNTYGQL 363


>gi|408500684|ref|YP_006864603.1| RCC1 domain-containing protein [Bifidobacterium asteroides PRL2011]
 gi|408465508|gb|AFU71037.1| RCC1 domain-containing protein [Bifidobacterium asteroides PRL2011]
          Length = 1173

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 83/297 (27%), Positives = 119/297 (40%), Gaps = 63/297 (21%)

Query: 29   VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPG---LPSDVT--SVSAGHYHSLAVTNNG 83
            + ++GD S G LG   +       +  P   PG    P+DVT  SVSAG  H++AV   G
Sbjct: 836  IYTWGDNSAGQLGRTVT-------SNNPADKPGKADTPADVTFTSVSAGQGHTVAVDTQG 888

Query: 84   AVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVW 143
             V+ WG N   +LGR    + A  + P + +    +    A A    S A+ DDGS++ W
Sbjct: 889  DVYTWGDNTHGELGRSTTSTPA--DKPGKADTPAGITFTQASAGESHSVAVSDDGSIYTW 946

Query: 144  GKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGR 203
            G +  G+LG   +IT A  P + +  AG    + S G  H++A   DG L+ WG S    
Sbjct: 947  GDTANGRLGRDTNITPADKPGKADTPAGVTFTQASAGGKHSIALGSDGSLYTWGDSGKTS 1006

Query: 204  IGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEG 263
             G   K          +D  +                                      G
Sbjct: 1007 AGRPNK----------VDTPA--------------------------------------G 1018

Query: 264  VEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDM-GMFPVDINFHPVSISS 319
            +     + G  + L LG +G L S G N  GQLGR+  D     P   NF  + I +
Sbjct: 1019 ITFTQASAGASYCLALGSDGNLYSWGDNAKGQLGRDTGDTWSASPAKDNFPELGIPT 1075



 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 82/303 (27%), Positives = 131/303 (43%), Gaps = 69/303 (22%)

Query: 66  VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVE---GLDQVNVC 122
           ++    G  HS AV ++G+++ WG N+  QLGR   +   +   P + E   G+  V+V 
Sbjct: 710 ISQADGGDLHSAAVGSDGSLYTWGDNSHGQLGRDTADKPDS--HPSKAEAPAGVTFVHVS 767

Query: 123 AAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITE---AIVPSRVEALAGEKIVKVSF 179
           A +     S A+  DGSL+ WG + RGQLG  + +T    A  P +VEA AG   V+ S 
Sbjct: 768 AGYG---FSVALASDGSLYSWGDNSRGQLG--RTVTSNNPANRPHKVEAPAGITFVQASA 822

Query: 180 GWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQ 239
           G  H +A + DG ++ WG   D   G LG+ + S   ++  D+  ++D            
Sbjct: 823 GGSHVVALSSDGNIYTWG---DNSAGQLGRTVTS---NNPADKPGKADTPAD-------- 868

Query: 240 KLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGR- 298
                                   V    ++ G  H++ +   G + + G N +G+LGR 
Sbjct: 869 ------------------------VTFTSVSAGQGHTVAVDTQGDVYTWGDNTHGELGRS 904

Query: 299 ------EKQDMGMFPVDINFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQ 352
                 +K      P  I F     S+G  HS+A+ +  S         I +WG   + +
Sbjct: 905 TTSTPADKPGKADTPAGITF--TQASAGESHSVAVSDDGS---------IYTWGDTANGR 953

Query: 353 LGR 355
           LGR
Sbjct: 954 LGR 956



 Score = 88.6 bits (218), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 95/335 (28%), Positives = 143/335 (42%), Gaps = 45/335 (13%)

Query: 58  RVPGL---PSDV--TSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRAT-----W 107
           R P L   P+ V  T VS G+ H LA+ ++G +++WG N + +LGR  + +         
Sbjct: 207 RTPSLVNPPTGVHFTQVSTGYTHFLAIGSDGNLYSWGNNADGELGRETVSTTPKDNPQID 266

Query: 108 NDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIV---PS 164
           N PK V     V+   A A    S A+G DG+L+ WG++K G+  LG+D   AI    P 
Sbjct: 267 NQPKLVTPPAGVHFTQACAGKWHSLALGSDGNLYSWGENKYGE--LGRDTGSAIYDVKPG 324

Query: 165 RVEALAG-EKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRS 223
           +V    G  KI ++S G  +++A   DG L+ WG   D     LG+     P      R 
Sbjct: 325 KVNLPKGITKITQISAGTFYSMALDSDGDLYSWG---DNTYDELGRYAGGYPFRDRSPRK 381

Query: 224 SESDQEISSSTIEKAQKLVSEGMEKEKYMPII-WEPF--------------------LVE 262
                 +   T  KA +  S     +  +    W  +                    +  
Sbjct: 382 MTMPAGVKKFTWIKAGEWTSLATSSDGSLYSWGWNEYGQLGRNTAPARQDRTPRKVTMPA 441

Query: 263 GV-EVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFHPVSISSGL 321
           GV +   ++    HSL LG +G L S G N   QLGR   D G    D+    V   +G+
Sbjct: 442 GVTKFTKVSAEHRHSLALGSDGNLYSWGLNDCKQLGR---DTGSAKYDVKPGKVPTPAGV 498

Query: 322 GHSLAICEVRSSNVTGGARG-IVSWGWNRSSQLGR 355
                +    S ++  G+ G + SWG N+  +LGR
Sbjct: 499 AQFTEVSAGYSHSLAIGSDGNLYSWGQNKYGELGR 533



 Score = 81.3 bits (199), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 67/245 (27%), Positives = 103/245 (42%), Gaps = 57/245 (23%)

Query: 119 VNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVS 178
           + +  A    + S+A+G DGSL+ WG +  GQLG          PS+ EA AG   V VS
Sbjct: 708 IRISQADGGDLHSAAVGSDGSLYTWGDNSHGQLGRDTADKPDSHPSKAEAPAGVTFVHVS 767

Query: 179 FGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKA 238
            G+G ++A   DG L+ WG   D   G LG+ +                   S++   + 
Sbjct: 768 AGYGFSVALASDGSLYSWG---DNSRGQLGRTV------------------TSNNPANRP 806

Query: 239 QKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGR 298
            K+ +                   G+  V  + G  H + L  +G + + G N  GQLGR
Sbjct: 807 HKVEAPA-----------------GITFVQASAGGSHVVALSSDGNIYTWGDNSAGQLGR 849

Query: 299 --------EKQDMGMFPVDINFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRS 350
                   +K      P D+ F   S+S+G GH++A+      +  G    + +WG N  
Sbjct: 850 TVTSNNPADKPGKADTPADVTF--TSVSAGQGHTVAV------DTQG---DVYTWGDNTH 898

Query: 351 SQLGR 355
            +LGR
Sbjct: 899 GELGR 903



 Score = 78.6 bits (192), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 76/270 (28%), Positives = 116/270 (42%), Gaps = 47/270 (17%)

Query: 66  VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAF 125
           +T +SAG ++S+A+ ++G +++WG N   +LGR A         P+++     V      
Sbjct: 335 ITQISAGTFYSMALDSDGDLYSWGDNTYDELGRYAGGYPFRDRSPRKMTMPAGVKKFTWI 394

Query: 126 ASGVVSS-AIGDDGSLWVWGKSKRGQLGLGK-DITEAIVPSRVEALAG-EKIVKVSFGWG 182
            +G  +S A   DGSL+ WG ++ GQLG       +   P +V   AG  K  KVS    
Sbjct: 395 KAGEWTSLATSSDGSLYSWGWNEYGQLGRNTAPARQDRTPRKVTMPAGVTKFTKVSAEHR 454

Query: 183 HALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLV 242
           H+LA   DG L+ WG +       LG+   S+  D                 ++  +   
Sbjct: 455 HSLALGSDGNLYSWGLN---DCKQLGRDTGSAKYD-----------------VKPGKVPT 494

Query: 243 SEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGRE--- 299
             G+                  +  +++ G+ HSL +G +G L S G N YG+LGR    
Sbjct: 495 PAGV-----------------AQFTEVSAGYSHSLAIGSDGNLYSWGQNKYGELGRPTSG 537

Query: 300 KQD----MGMFPVDINFHPVSISSGLGHSL 325
           K D    M  FP D     VS S   G +L
Sbjct: 538 KYDSSPGMVAFPEDPKPVDVSFSGTPGTNL 567



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 69/227 (30%), Positives = 97/227 (42%), Gaps = 39/227 (17%)

Query: 131 SSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTED 190
           S AI  DG+L+ WG +   +LG  +D  E   PS V    G    +VS G+ H LA   D
Sbjct: 180 SQAIASDGNLYRWGDNNY-KLGTPED--EKRTPSLVNPPTGVHFTQVSTGYTHFLAIGSD 236

Query: 191 GKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEK 250
           G L+ WG +ADG +G   + + ++P D+                I+   KLV+       
Sbjct: 237 GNLYSWGNNADGELGR--ETVSTTPKDN--------------PQIDNQPKLVTP------ 274

Query: 251 YMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDI 310
                       GV       G  HSL LG +G L S G N YG+LGR   D G    D+
Sbjct: 275 ----------PAGVHFTQACAGKWHSLALGSDGNLYSWGENKYGELGR---DTGSAIYDV 321

Query: 311 NFHPVSISSGLGHSLAICEVRSSNVTGGARG-IVSWGWNRSSQLGRM 356
               V++  G+     I      ++   + G + SWG N   +LGR 
Sbjct: 322 KPGKVNLPKGITKITQISAGTFYSMALDSDGDLYSWGDNTYDELGRY 368



 Score = 55.8 bits (133), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 42/122 (34%), Positives = 61/122 (50%), Gaps = 2/122 (1%)

Query: 59  VPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQ 118
           +P   +  T VSA H HSLA+ ++G +++WG N+  QLGR    ++     P +V     
Sbjct: 439 MPAGVTKFTKVSAEHRHSLALGSDGNLYSWGLNDCKQLGRDTGSAKYDVK-PGKVPTPAG 497

Query: 119 VNVCAAFASGVVSS-AIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKV 177
           V      ++G   S AIG DG+L+ WG++K G+LG          P  V      K V V
Sbjct: 498 VAQFTEVSAGYSHSLAIGSDGNLYSWGQNKYGELGRPTSGKYDSSPGMVAFPEDPKPVDV 557

Query: 178 SF 179
           SF
Sbjct: 558 SF 559



 Score = 48.5 bits (114), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 39/128 (30%), Positives = 53/128 (41%), Gaps = 22/128 (17%)

Query: 254 IIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQD-------MGMF 306
           +   P    G+ +     G  HS  +G +G L + G N +GQLGR+  D           
Sbjct: 698 VTLTPPPARGIRISQADGGDLHSAAVGSDGSLYTWGDNSHGQLGRDTADKPDSHPSKAEA 757

Query: 307 PVDINFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRM----GPDNVP 362
           P  + F  V +S+G G S+A+    S         + SWG N   QLGR      P N P
Sbjct: 758 PAGVTF--VHVSAGYGFSVALASDGS---------LYSWGDNSRGQLGRTVTSNNPANRP 806

Query: 363 LVVEGLEG 370
             VE   G
Sbjct: 807 HKVEAPAG 814



 Score = 42.4 bits (98), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 55/217 (25%), Positives = 81/217 (37%), Gaps = 63/217 (29%)

Query: 154 GKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALES 213
           G+ +T    P+R     G +I +   G  H+ A   DG L+ WG ++ G++G        
Sbjct: 695 GQTVTLTPPPAR-----GIRISQADGGDLHSAAVGSDGSLYTWGDNSHGQLGR------- 742

Query: 214 SPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGF 273
                  D + + D   S     KA+                       GV  V ++ G+
Sbjct: 743 -------DTADKPDSHPS-----KAEAPA--------------------GVTFVHVSAGY 770

Query: 274 DHSLVLGRNGVLLSCGSNVYGQLGR--------EKQDMGMFPVDINFHPVSISSGLGHSL 325
             S+ L  +G L S G N  GQLGR         +      P  I F  V  S+G  H +
Sbjct: 771 GFSVALASDGSLYSWGDNSRGQLGRTVTSNNPANRPHKVEAPAGITF--VQASAGGSHVV 828

Query: 326 AICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPDNVP 362
           A+    +         I +WG N + QLGR    N P
Sbjct: 829 ALSSDGN---------IYTWGDNSAGQLGRTVTSNNP 856



 Score = 38.9 bits (89), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 28/70 (40%), Positives = 42/70 (60%), Gaps = 11/70 (15%)

Query: 55  EPTRVPGLPSDV---TSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGR---GALESR---- 104
           +P +VP  P+ V   T VSAG+ HSLA+ ++G +++WG+N   +LGR   G  +S     
Sbjct: 488 KPGKVP-TPAGVAQFTEVSAGYSHSLAIGSDGNLYSWGQNKYGELGRPTSGKYDSSPGMV 546

Query: 105 ATWNDPKRVE 114
           A   DPK V+
Sbjct: 547 AFPEDPKPVD 556


>gi|345325025|ref|XP_001513851.2| PREDICTED: RCC1 and BTB domain-containing protein 1
           [Ornithorhynchus anatinus]
          Length = 531

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 54/158 (34%), Positives = 92/158 (58%), Gaps = 5/158 (3%)

Query: 66  VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAF 125
           VT V+ G +HS+A+ ++G V+AWG NN  Q+G G+  ++ T   P++V     +    + 
Sbjct: 130 VTEVACGSHHSMALADDGEVYAWGYNNCGQVGSGSTANQPT---PRKVTNCLHIKRVVSI 186

Query: 126 ASGVVSS-AIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHA 184
           A G  SS A+ D+G ++ WG +  GQLGLG +  + + P RV AL    ++++  G+ H 
Sbjct: 187 ACGQTSSMAVLDNGEVYGWGYNGNGQLGLGNNGNQ-LTPCRVAALHSVCVLQIVCGYAHT 245

Query: 185 LAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDR 222
           LA T++G L+ WG +  G++G   K+   SP    +++
Sbjct: 246 LALTDEGLLYAWGANTYGQLGTGNKSNLLSPAQIMVEK 283



 Score = 79.3 bits (194), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 60/247 (24%), Positives = 99/247 (40%), Gaps = 64/247 (25%)

Query: 75  HSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVV---- 130
           H L  T +G V+AWG N   QLG G              +G+  + +C       V    
Sbjct: 86  HVLLSTEDGIVYAWGHNGYSQLGNGTTN-----------QGIAPIQICTNLMIKQVTEVA 134

Query: 131 -----SSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHAL 185
                S A+ DDG ++ WG +  GQ+G G    +         L  +++V ++ G   ++
Sbjct: 135 CGSHHSMALADDGEVYAWGYNNCGQVGSGSTANQPTPRKVTNCLHIKRVVSIACGQTSSM 194

Query: 186 AQTEDGKLFGWGYSADGR--IGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVS 243
           A  ++G+++GWGY+ +G+  +GN G  L    + +                         
Sbjct: 195 AVLDNGEVYGWGYNGNGQLGLGNNGNQLTPCRVAA------------------------- 229

Query: 244 EGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDM 303
                            +  V V+ I CG+ H+L L   G+L + G+N YGQLG   +  
Sbjct: 230 -----------------LHSVCVLQIVCGYAHTLALTDEGLLYAWGANTYGQLGTGNKSN 272

Query: 304 GMFPVDI 310
            + P  I
Sbjct: 273 LLSPAQI 279


>gi|386723136|ref|YP_006189462.1| BNR repeat-containing protein [Paenibacillus mucilaginosus K02]
 gi|384090261|gb|AFH61697.1| BNR repeat domain-containing protein [Paenibacillus mucilaginosus
           K02]
          Length = 686

 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 85/288 (29%), Positives = 132/288 (45%), Gaps = 49/288 (17%)

Query: 49  VGGDAYE------PTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALE 102
           +G D Y+      P +V GL S V ++SA   H+LA+ ++G VWAWG NN  QLG G   
Sbjct: 113 LGEDPYKTSWRLTPVQVQGL-SSVVAISANFSHNLALKSDGTVWAWGMNNAGQLGNGTTS 171

Query: 103 SRAT-WNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAI 161
              T +  P +V+GLD V   AA      S A+  DG+LW WG       GL  D T   
Sbjct: 172 DMYTSFYTPSQVQGLDSVIAVAAGPG--TSLALKSDGTLWAWG-------GLVGDGTTES 222

Query: 162 VPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNID 221
             + V+A     +V    G    + ++ DG ++ WG++  G++G+       +P+     
Sbjct: 223 RSTPVQAQGLSSVVSFDAGDSRFVVKS-DGTVWAWGWNGYGQLGDGTTTTRYTPVPL--- 278

Query: 222 RSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWE------------------PFLVEG 263
                 QE+SS     A +  S  ++ +     +WE                  P  V+ 
Sbjct: 279 ------QELSSVAAFAADEWHSLALKSDG---TVWEWGCNSKGEMCYESDIRTTPVQVQD 329

Query: 264 V-EVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDI 310
           +   VDIA GF+HSL +  +G + + G+N YGQ+G   +     P+ +
Sbjct: 330 LSSAVDIAAGFEHSLAVKSDGTVWAWGNNGYGQMGDAARTYHSTPIQV 377



 Score = 87.0 bits (214), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 81/262 (30%), Positives = 126/262 (48%), Gaps = 30/262 (11%)

Query: 64  SDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCA 123
           S VT V+AG +HSLA+  +G VWAWG+++   LG G   S AT   P +V+ L++V   A
Sbjct: 34  SGVTMVAAGRFHSLALKEDGTVWAWGKDS---LGNGTPYSSAT---PVQVKDLEEVVTVA 87

Query: 124 AFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITE-AIVPSRVEALAGEKIVKVSFGWG 182
             A G  S A+  DG++W WG+++ G LG     T   + P +V+ L+   +V +S  + 
Sbjct: 88  --AGGNHSLALKSDGTVWAWGQNEYGVLGEDPYKTSWRLTPVQVQGLS--SVVAISANFS 143

Query: 183 HALAQTEDGKLFGWGYSADGRIGN---------LGKALESSPLDSNIDRSSESDQEI--- 230
           H LA   DG ++ WG +  G++GN              +   LDS I  ++     +   
Sbjct: 144 HNLALKSDGTVWAWGMNNAGQLGNGTTSDMYTSFYTPSQVQGLDSVIAVAAGPGTSLALK 203

Query: 231 SSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGV-EVVDIACGFDHSLVLGRNGVLLSCG 289
           S  T+     LV +G  + +  P+       +G+  VV    G D   V+  +G + + G
Sbjct: 204 SDGTLWAWGGLVGDGTTESRSTPV-----QAQGLSSVVSFDAG-DSRFVVKSDGTVWAWG 257

Query: 290 SNVYGQLGREKQDMGMFPVDIN 311
            N YGQLG         PV + 
Sbjct: 258 WNGYGQLGDGTTTTRYTPVPLQ 279



 Score = 44.7 bits (104), Expect = 0.083,   Method: Compositional matrix adjust.
 Identities = 32/92 (34%), Positives = 45/92 (48%), Gaps = 7/92 (7%)

Query: 265 EVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFHPVSISSGLGHS 324
           EVV +A G +HSL L  +G + + G N YG LG +      +       PV +  GL   
Sbjct: 82  EVVTVAAGGNHSLALKSDGTVWAWGQNEYGVLGEDP-----YKTSWRLTPVQV-QGLSSV 135

Query: 325 LAICEVRSSNVTGGARGIV-SWGWNRSSQLGR 355
           +AI    S N+   + G V +WG N + QLG 
Sbjct: 136 VAISANFSHNLALKSDGTVWAWGMNNAGQLGN 167


>gi|302876126|ref|YP_003844759.1| chromosome condensation regulator RCC1 [Clostridium cellulovorans
           743B]
 gi|302578983|gb|ADL52995.1| regulator of chromosome condensation RCC1 [Clostridium
           cellulovorans 743B]
          Length = 852

 Score = 95.9 bits (237), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 81/268 (30%), Positives = 129/268 (48%), Gaps = 60/268 (22%)

Query: 31  SFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGR 90
           S+G    G LG     TG   ++  P +VPG    +TS+S+G  HSL + N+G VW+WG 
Sbjct: 158 SWGQNQYGQLG-----TGNTTNSNIPLQVPGQIG-ITSISSGGGHSLVIKNDGTVWSWGC 211

Query: 91  NNEVQLGRGALESRATWNDPKRVEGLD-QVNVCAAFASGVV-SSAIGDDGSLWVWGKSKR 148
           NN  QLG G   +  T   P ++ GL+  +NV A    GV+ S+A+  DG++W WG + R
Sbjct: 212 NNFGQLGNGTNSNNPT---PHQISGLNGIINVSA----GVIHSTALKSDGTVWNWGCNFR 264

Query: 149 GQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLG 208
           G+L  G  I ++ +P +   L G  I+ ++ GW  + A   DG  + WG +  G++GN  
Sbjct: 265 GELANGNKI-DSYIPVQANGLNG--IIAITAGWEFSSAIKSDGTFWVWGVNDYGQLGNGS 321

Query: 209 KALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVD 268
           K+  +SP+            ++SS                            + G+  +D
Sbjct: 322 KSDVTSPM------------QVSS----------------------------LSGITAID 341

Query: 269 IACGFDHSLVLGRNGVLLSCGSNVYGQL 296
              G  +++ L  +G + + G N YGQL
Sbjct: 342 --TGATYTVALKTDGNIFAFGENTYGQL 367



 Score = 92.0 bits (227), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 87/309 (28%), Positives = 135/309 (43%), Gaps = 67/309 (21%)

Query: 68  SVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFAS 127
           +VSAG+  ++A+ N+G VW+WG N    LG G   +    N P +V+GL+ +   +A  +
Sbjct: 39  AVSAGNTTTIALKNDGTVWSWGFNQNGHLGDGTTSNS---NSPVQVKGLNGITAISAGWA 95

Query: 128 GVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQ 187
             V  A+  DG++W WG    G+LG G + +    P+ +  L G  I  +S GW H LA 
Sbjct: 96  HFV--ALKSDGTVWTWGVGYSGELGDGTN-SLRTTPAPINGLTG--ITAISAGWNHTLAL 150

Query: 188 TEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGME 247
             DG L+ WG +  G++G        +  +SNI                           
Sbjct: 151 KADGTLWSWGQNQYGQLG------TGNTTNSNI--------------------------- 177

Query: 248 KEKYMPIIWEPFLVEG-VEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMF 306
                     P  V G + +  I+ G  HSLV+  +G + S G N +GQLG         
Sbjct: 178 ----------PLQVPGQIGITSISSGGGHSLVIKNDGTVWSWGCNNFGQLGNGTNSNNPT 227

Query: 307 PVDIN--FHPVSISSGLGHSLAICEVRSSNVTGGARGIV-SWGWNRSSQL--GRMGPDNV 361
           P  I+     +++S+G+ HS A+           + G V +WG N   +L  G      +
Sbjct: 228 PHQISGLNGIINVSAGVIHSTAL----------KSDGTVWNWGCNFRGELANGNKIDSYI 277

Query: 362 PLVVEGLEG 370
           P+   GL G
Sbjct: 278 PVQANGLNG 286


>gi|354485549|ref|XP_003504946.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC6-like
           [Cricetulus griseus]
          Length = 887

 Score = 95.9 bits (237), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 76/276 (27%), Positives = 127/276 (46%), Gaps = 51/276 (18%)

Query: 25  SGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPS-DVTSVSAGHYHSLAVTNNG 83
           S   V S GD S G LG          +  +P  +  L + D+  VS G  HS+AV + G
Sbjct: 38  SNHRVYSCGDNSLGQLGQKRE-----QNTEQPEPIQALGTLDIDLVSCGKEHSIAVCHKG 92

Query: 84  AVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVW 143
            V+AWG  +E QLG G  +       P R++ L  + +         S A+ +DG ++ W
Sbjct: 93  RVFAWGAGSEGQLGIGEFKEINLM--PMRIKTLGGIKIIQVSCGHYHSLALSEDGQVFSW 150

Query: 144 GKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGR 203
           GK+ +GQLGLG   +    P +V +L G  + +V+ G  H+ A +  G  +GWG ++ G+
Sbjct: 151 GKNSQGQLGLGMQSSSQASPQKVTSLEGIPLAQVAAGGSHSFALSLTGTSYGWGSNSVGQ 210

Query: 204 IGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEG 263
           +   G+                      +ST++                  I +P  ++ 
Sbjct: 211 LALSGE----------------------NSTVQ------------------ISKPHSIDA 230

Query: 264 VE---VVDIACGFDHSLVLGRNGVLLSCGSNVYGQL 296
           ++   V+ I+CG++H+ VL ++G + + G N  GQL
Sbjct: 231 LKNLGVIYISCGYEHTAVLTKDGQVFTFGDNSSGQL 266



 Score = 92.0 bits (227), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 87/326 (26%), Positives = 147/326 (45%), Gaps = 49/326 (15%)

Query: 50  GGDAYEPTRVPGLPS-DVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWN 108
             D+ +P R+ G    ++   ++G  HSL + +N  V++ G N+  QLG+   +      
Sbjct: 6   AADSRQPRRLNGRDGLELLQAASGERHSLLLFSNHRVYSCGDNSLGQLGQ---KREQNTE 62

Query: 109 DPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEA 168
            P+ ++ L  +++         S A+   G ++ WG    GQLG+G+     ++P R++ 
Sbjct: 63  QPEPIQALGTLDIDLVSCGKEHSIAVCHKGRVFAWGAGSEGQLGIGEFKEINLMPMRIKT 122

Query: 169 LAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQ 228
           L G KI++VS G  H+LA +EDG++F WG ++ G++G LG  ++SS        S  S Q
Sbjct: 123 LGGIKIIQVSCGHYHSLALSEDGQVFSWGKNSQGQLG-LG--MQSS--------SQASPQ 171

Query: 229 EISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSC 288
           +++S                            +EG+ +  +A G  HS  L   G     
Sbjct: 172 KVTS----------------------------LEGIPLAQVAAGGSHSFALSLTGTSYGW 203

Query: 289 GSNVYGQLGREKQDMGMFPVDINF-HPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGW 347
           GSN  GQL    ++     V I+  H +     LG     C    + V      + ++G 
Sbjct: 204 GSNSVGQLALSGENST---VQISKPHSIDALKNLGVIYISCGYEHTAVLTKDGQVFTFGD 260

Query: 348 NRSSQLGR--MGPDNVPLVVEGLEGE 371
           N S QL     G    P +VEG++G+
Sbjct: 261 NSSGQLQNNPRGKRRGPQLVEGIKGQ 286



 Score = 47.4 bits (111), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 42/158 (26%), Positives = 70/158 (44%), Gaps = 5/158 (3%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAW 88
           V S+G  SQG LGL    +       + T + G+P  +  V+AG  HS A++  G  + W
Sbjct: 147 VFSWGKNSQGQLGLGMQ-SSSQASPQKVTSLEGIP--LAQVAAGGSHSFALSLTGTSYGW 203

Query: 89  GRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKR 148
           G N+  QL      S    + P  ++ L  + V         ++ +  DG ++ +G +  
Sbjct: 204 GSNSVGQLALSGENSTVQISKPHSIDALKNLGVIYISCGYEHTAVLTKDGQVFTFGDNSS 263

Query: 149 GQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALA 186
           GQL       +   P  VE + G+ + K+  G  H +A
Sbjct: 264 GQLQ-NNPRGKRRGPQLVEGIKGQ-VSKIECGSYHTIA 299


>gi|302799595|ref|XP_002981556.1| hypothetical protein SELMODRAFT_179009 [Selaginella moellendorffii]
 gi|300150722|gb|EFJ17371.1| hypothetical protein SELMODRAFT_179009 [Selaginella moellendorffii]
          Length = 430

 Score = 95.9 bits (237), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 88/339 (25%), Positives = 145/339 (42%), Gaps = 64/339 (18%)

Query: 23  SASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPS-DVTSVSAGHYHSLAVTN 81
           SA+   + S+G G  G LG      G   D + P  +  L   ++  ++ G  H LAVT 
Sbjct: 73  SATRLTIYSWGWGDFGRLG-----HGNSSDLFVPHPIKALQGLEIRQIACGDSHCLAVTA 127

Query: 82  NGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLW 141
           +G V++WGRN   QLG G  +       P ++   + V+V    A    ++A+ D G L+
Sbjct: 128 DGEVYSWGRNQNGQLGLGDTDDSLV---PHKLLAFEGVSVKMLAAGAEHTAAVTDSGKLY 184

Query: 142 VWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSAD 201
            WG  + G LGLG D  + ++P+ V A+  EK+  V+ GW H +A ++ GKL+ +G+S  
Sbjct: 185 GWGWGRYGNLGLG-DRGDRMLPAEVPAVGDEKMCMVACGWRHTIAVSQSGKLYTYGWSKY 243

Query: 202 GRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLV 261
           G++G+                   +D  +       A+                      
Sbjct: 244 GQLGH----------------GDYADHLLPHQVAALAE---------------------- 265

Query: 262 EGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINF-----HPVS 316
               +  ++ G+ H++ L   G L   G N +GQ+G    D    P  I+        V 
Sbjct: 266 --FNITQVSGGWRHTVALTEAGKLYGWGWNKFGQVGSGDVDDHTSPQLISIPGQHQRVVQ 323

Query: 317 ISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGR 355
           +S G  H++A+ +  +         + SWG   S QLG 
Sbjct: 324 VSCGWRHTVAVTDKNN---------VYSWGRGTSGQLGH 353



 Score = 84.3 bits (207), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 80/312 (25%), Positives = 146/312 (46%), Gaps = 42/312 (13%)

Query: 66  VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNV---- 121
           V  VSAG  H++A+ +   V ++GR  + QLG G  E R     P+ +  L+   +    
Sbjct: 7   VLLVSAGASHTVALLSGQVVCSFGRGEDGQLGHGDAEDRLL---PRIIGALNDCEISLVA 63

Query: 122 CAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGW 181
           C A  +   S+      +++ WG    G+LG G   ++  VP  ++AL G +I +++ G 
Sbjct: 64  CGADHTTAYSAT---RLTIYSWGWGDFGRLGHGNS-SDLFVPHPIKALQGLEIRQIACGD 119

Query: 182 GHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEIS-----SSTIE 236
            H LA T DG+++ WG + +G++G LG   +S      +     S + ++     ++ + 
Sbjct: 120 SHCLAVTADGEVYSWGRNQNGQLG-LGDTDDSLVPHKLLAFEGVSVKMLAAGAEHTAAVT 178

Query: 237 KAQKLVSEGMEK----------EKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLL 286
            + KL   G  +          ++ +P   E   V   ++  +ACG+ H++ + ++G L 
Sbjct: 179 DSGKLYGWGWGRYGNLGLGDRGDRMLPA--EVPAVGDEKMCMVACGWRHTIAVSQSGKLY 236

Query: 287 SCGSNVYGQLGREKQDMGMFPVDI----NFHPVSISSGLGHSLAICEVRSSNVTGGARGI 342
           + G + YGQLG       + P  +     F+   +S G  H++A+ E         A  +
Sbjct: 237 TYGWSKYGQLGHGDYADHLLPHQVAALAEFNITQVSGGWRHTVALTE---------AGKL 287

Query: 343 VSWGWNRSSQLG 354
             WGWN+  Q+G
Sbjct: 288 YGWGWNKFGQVG 299



 Score = 68.2 bits (165), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 58/211 (27%), Positives = 102/211 (48%), Gaps = 20/211 (9%)

Query: 15  LTSRIFMRSASGTAVVS-------FGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSD-V 66
           ++ ++    A  TA V+       +G G  G LGL     G  GD   P  VP +  + +
Sbjct: 162 VSVKMLAAGAEHTAAVTDSGKLYGWGWGRYGNLGL-----GDRGDRMLPAEVPAVGDEKM 216

Query: 67  TSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFA 126
             V+ G  H++AV+ +G ++ +G +   QLG G          P +V  L + N+     
Sbjct: 217 CMVACGWRHTIAVSQSGKLYTYGWSKYGQLGHGDYADHLL---PHQVAALAEFNITQVSG 273

Query: 127 SGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGE--KIVKVSFGWGHA 184
               + A+ + G L+ WG +K GQ+G G D+ +   P  + ++ G+  ++V+VS GW H 
Sbjct: 274 GWRHTVALTEAGKLYGWGWNKFGQVGSG-DVDDHTSPQLI-SIPGQHQRVVQVSCGWRHT 331

Query: 185 LAQTEDGKLFGWGYSADGRIGNLGKALESSP 215
           +A T+   ++ WG    G++G+      S+P
Sbjct: 332 VAVTDKNNVYSWGRGTSGQLGHGDAVDRSAP 362



 Score = 52.0 bits (123), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 60/231 (25%), Positives = 92/231 (39%), Gaps = 57/231 (24%)

Query: 143 WGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDG-KLFGWGYSAD 201
           +G+ + GQLG G D  + ++P  + AL   +I  V+ G  H  A +     ++ WG+   
Sbjct: 29  FGRGEDGQLGHG-DAEDRLLPRIIGALNDCEISLVACGADHTTAYSATRLTIYSWGWGDF 87

Query: 202 GRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPF-L 260
           GR+G+                                      G   + ++P    P   
Sbjct: 88  GRLGH--------------------------------------GNSSDLFVP---HPIKA 106

Query: 261 VEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVD-INFHPVSISS 319
           ++G+E+  IACG  H L +  +G + S G N  GQLG    D  + P   + F  VS+  
Sbjct: 107 LQGLEIRQIACGDSHCLAVTADGEVYSWGRNQNGQLGLGDTDDSLVPHKLLAFEGVSVK- 165

Query: 320 GLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLG------RMGPDNVPLV 364
                LA     ++ VT   + +  WGW R   LG      RM P  VP V
Sbjct: 166 ----MLAAGAEHTAAVTDSGK-LYGWGWGRYGNLGLGDRGDRMLPAEVPAV 211



 Score = 40.0 bits (92), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 31/58 (53%), Gaps = 3/58 (5%)

Query: 59  VPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGL 116
           +PG    V  VS G  H++AVT+   V++WGR    QLG G    R+    PK ++ L
Sbjct: 314 IPGQHQRVVQVSCGWRHTVAVTDKNNVYSWGRGTSGQLGHGDAVDRSA---PKGIQAL 368


>gi|379720536|ref|YP_005312667.1| BNR repeat-containing protein [Paenibacillus mucilaginosus 3016]
 gi|378569208|gb|AFC29518.1| BNR repeat domain-containing protein [Paenibacillus mucilaginosus
           3016]
          Length = 686

 Score = 95.9 bits (237), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 85/288 (29%), Positives = 132/288 (45%), Gaps = 49/288 (17%)

Query: 49  VGGDAYE------PTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALE 102
           +G D Y+      P +V GL S V ++SA   H+LA+ ++G VWAWG NN  QLG G   
Sbjct: 113 LGEDPYKTSWRLTPVQVQGL-SSVVAISANFSHNLALKSDGTVWAWGMNNAGQLGNGTTS 171

Query: 103 SRAT-WNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAI 161
              T +  P +V+GLD V   AA      S A+  DG+LW WG       GL  D T   
Sbjct: 172 DMYTSFYTPSQVQGLDSVIAVAAGPG--TSLALKSDGTLWAWG-------GLVGDGTTES 222

Query: 162 VPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNID 221
             + V+A     +V    G    + ++ DG ++ WG++  G++G+       +P+     
Sbjct: 223 RSTPVQAQGLSSVVSFDAGDSRFVVKS-DGTVWAWGWNGYGQLGDGTTTTRYTPVPL--- 278

Query: 222 RSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWE------------------PFLVEG 263
                 QE+SS     A +  S  ++ +     +WE                  P  V+ 
Sbjct: 279 ------QELSSVAAFAADEWHSLALKSDG---TVWEWGCNSKGEMCYESDIRTTPVQVQD 329

Query: 264 V-EVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDI 310
           +   VDIA GF+HSL +  +G + + G+N YGQ+G   +     P+ +
Sbjct: 330 LSSAVDIAAGFEHSLAVKSDGTVWAWGNNGYGQMGDAARTYHSTPIQV 377



 Score = 86.7 bits (213), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 81/262 (30%), Positives = 126/262 (48%), Gaps = 30/262 (11%)

Query: 64  SDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCA 123
           S VT V+AG +HSLA+  +G VWAWG+++   LG G   S AT   P +V+ L++V   A
Sbjct: 34  SGVTMVAAGRFHSLALKEDGTVWAWGKDS---LGNGTPYSSAT---PVQVKDLEEVVTVA 87

Query: 124 AFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITE-AIVPSRVEALAGEKIVKVSFGWG 182
             A G  S A+  DG++W WG+++ G LG     T   + P +V+ L+   +V +S  + 
Sbjct: 88  --AGGNHSLALKSDGTVWAWGQNEYGVLGEDPYKTSWRLTPVQVQGLS--SVVAISANFS 143

Query: 183 HALAQTEDGKLFGWGYSADGRIGN---------LGKALESSPLDSNIDRSSESDQEI--- 230
           H LA   DG ++ WG +  G++GN              +   LDS I  ++     +   
Sbjct: 144 HNLALKSDGTVWAWGMNNAGQLGNGTTSDMYTSFYTPSQVQGLDSVIAVAAGPGTSLALK 203

Query: 231 SSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGV-EVVDIACGFDHSLVLGRNGVLLSCG 289
           S  T+     LV +G  + +  P+       +G+  VV    G D   V+  +G + + G
Sbjct: 204 SDGTLWAWGGLVGDGTTESRSTPV-----QAQGLSSVVSFDAG-DSRFVVKSDGTVWAWG 257

Query: 290 SNVYGQLGREKQDMGMFPVDIN 311
            N YGQLG         PV + 
Sbjct: 258 WNGYGQLGDGTTTTRYTPVPLQ 279



 Score = 44.3 bits (103), Expect = 0.090,   Method: Compositional matrix adjust.
 Identities = 32/92 (34%), Positives = 45/92 (48%), Gaps = 7/92 (7%)

Query: 265 EVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFHPVSISSGLGHS 324
           EVV +A G +HSL L  +G + + G N YG LG +      +       PV +  GL   
Sbjct: 82  EVVTVAAGGNHSLALKSDGTVWAWGQNEYGVLGEDP-----YKTSWRLTPVQV-QGLSSV 135

Query: 325 LAICEVRSSNVTGGARGIV-SWGWNRSSQLGR 355
           +AI    S N+   + G V +WG N + QLG 
Sbjct: 136 VAISANFSHNLALKSDGTVWAWGMNNAGQLGN 167


>gi|432098051|gb|ELK27938.1| Protein RCC2, partial [Myotis davidii]
          Length = 427

 Score = 95.9 bits (237), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 81/293 (27%), Positives = 130/293 (44%), Gaps = 35/293 (11%)

Query: 75  HSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAI 134
           HSL +T  G +W+WGRN + QLG G  +       P+ +EGL    + +A      + A+
Sbjct: 66  HSLLITTEGKLWSWGRNEKGQLGHGDTKRVEA---PRLIEGLSHETIVSAACGRNHTLAL 122

Query: 135 GDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLF 194
            + GS++ +G++K GQLGLG        P+++    G+ I K++ G   ++     G L+
Sbjct: 123 TETGSVFAFGENKMGQLGLGNQTDAVPSPAQI-MYNGQPITKMACGAEFSMIMDCKGNLY 181

Query: 195 GWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPI 254
            +G    G++G+            N D    +  +      E   + V+  +EK K   I
Sbjct: 182 SFGCPEYGQLGH------------NSDGKFIARAQRIEYDCELVPRRVAIFIEKTKDGQI 229

Query: 255 IWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFHP 314
           +  P +V    V D+ACG +H+LVL     + S G   YG+LG  +Q   M P  +    
Sbjct: 230 LPVPNVV----VRDVACGANHTLVLDSQKRVFSWGFGGYGRLGHAEQKDEMVPRLVKLFD 285

Query: 315 V------SISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPDNV 361
                   I +G   S A+ EV          G+  WG   +S+   M P  V
Sbjct: 286 FPGRGASQIYAGYTCSFAVSEV---------GGLFFWGATNTSRESTMYPKTV 329



 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 55/186 (29%), Positives = 80/186 (43%), Gaps = 31/186 (16%)

Query: 56  PTRVPGLPSD-VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVE 114
           P  + GL  + + S + G  H+LA+T  G+V+A+G N   QLG G      T   P   +
Sbjct: 98  PRLIEGLSHETIVSAACGRNHTLALTETGSVFAFGENKMGQLGLG----NQTDAVPSPAQ 153

Query: 115 GLDQVNVCAAFASGVVSSAIGD-DGSLWVWGKSKRGQLGL---GKDITEA--------IV 162
            +         A G   S I D  G+L+ +G  + GQLG    GK I  A        +V
Sbjct: 154 IMYNGQPITKMACGAEFSMIMDCKGNLYSFGCPEYGQLGHNSDGKFIARAQRIEYDCELV 213

Query: 163 PSRVEALAGEK-------------IVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGK 209
           P RV A+  EK             +  V+ G  H L      ++F WG+   GR+G+  +
Sbjct: 214 PRRV-AIFIEKTKDGQILPVPNVVVRDVACGANHTLVLDSQKRVFSWGFGGYGRLGHAEQ 272

Query: 210 ALESSP 215
             E  P
Sbjct: 273 KDEMVP 278


>gi|145593730|ref|YP_001158027.1| cell wall anchor domain-containing protein [Salinispora tropica
           CNB-440]
 gi|145303067|gb|ABP53649.1| LPXTG-motif cell wall anchor domain [Salinispora tropica CNB-440]
          Length = 558

 Score = 95.9 bits (237), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 99/337 (29%), Positives = 145/337 (43%), Gaps = 69/337 (20%)

Query: 28  AVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVT--SVSAGHYHSLAVTNNGAV 85
           A++++G    G LG      G   D+ EP  V  LP+  T  +V+AG  HS+A+T+ G V
Sbjct: 55  AILAWGGNDGGQLG-----DGTTTDSSEPIAV-RLPTGTTVAAVAAGDRHSVALTSAGTV 108

Query: 86  WAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGK 145
            AWGRN E QLG G   S     +P  V     + + A       S A+   GSL  WG 
Sbjct: 109 LAWGRNTEGQLGNGTTTSS---GEPVAVSLPSGIRIVAVAVGADHSLALTSTGSLLAWGS 165

Query: 146 SKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGK--LFGWGYSADGR 203
           +  GQLG G  +T +  P  V       +  ++ G  H L  T  G   L  WG + +G+
Sbjct: 166 NDTGQLGDGS-VTSSSTPVAVRLPPNTTVAAIAAGRDHNLVLTATGPAALLAWGANREGQ 224

Query: 204 IGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEG 263
           +G+           + +DRS                          + +P+     L  G
Sbjct: 225 LGD----------GTVVDRS--------------------------RPVPV----NLPTG 244

Query: 264 VEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFHPV-----SIS 318
           + V  IA G DHSL L  +  +L+ G N +GQLG       + PV +   PV     +I+
Sbjct: 245 LTVTAIAGGRDHSLALTSDDTVLAWGGNSHGQLGDGTTTGSLLPVTVVL-PVGAEATAIA 303

Query: 319 SGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGR 355
           +G  HSLA+    ++         ++WG N   QLG 
Sbjct: 304 AGRLHSLALTSDGTA---------LAWGGNHWGQLGN 331


>gi|426245676|ref|XP_004016632.1| PREDICTED: secretion-regulating guanine nucleotide exchange factor
           [Ovis aries]
          Length = 538

 Score = 95.9 bits (237), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 92/312 (29%), Positives = 137/312 (43%), Gaps = 41/312 (13%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAW 88
           V+S G  S G LG+P            P  +  L   V S++AG  H+LA T +G V+ W
Sbjct: 196 VLSCGSNSFGQLGVPRGPR----RCVIPQAIELLREKVVSIAAGLRHALAATASGTVFQW 251

Query: 89  GR---NNEVQLGRG-ALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWG 144
           G    ++  +L  G  L    T  +P  V GL+        A    S+++ D G L+VWG
Sbjct: 252 GTGLASSGRRLCPGQTLPLFLTAKEPSTVTGLENSQAVCVLAGSDHSASLTDAGELYVWG 311

Query: 145 KSKRGQLGLGKDITEAIVPSRVEA--LAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADG 202
            +K GQL         ++P R+EA     EKI  V  GW H +AQT  GK+F WG +  G
Sbjct: 312 SNKHGQLA--SQAAFLLLPQRIEAHCFQNEKIAAVWSGWTHLVAQTVTGKVFTWGRADYG 369

Query: 203 RIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVE 262
           ++G   +  E         +S + D  +  S  +K              +P +       
Sbjct: 370 QLGRTVETREGW-------QSEKQDPSLPGSGPQKG---------TPSCLPCL------- 406

Query: 263 GVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFHPVS----IS 318
                +I+CG +H+L + R GV  S G N +G  G   +     P  +   P S    + 
Sbjct: 407 -TGATEISCGSEHNLAVIR-GVCHSWGWNEHGMCGDGTEADVWAPKPVPGLPSSLGLHVG 464

Query: 319 SGLGHSLAICEV 330
            G GHSLA+C++
Sbjct: 465 CGAGHSLALCQL 476



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 90/315 (28%), Positives = 136/315 (43%), Gaps = 55/315 (17%)

Query: 75  HSL-AVTNNGAVWAWGRNNEVQLGRGALE---SRATWNDPKRVEGLDQVNVCAAFASGVV 130
           HSL AV    A++AWG N+  QLG G  E   S    +D  +   + Q+        G  
Sbjct: 80  HSLEAVPTAAALFAWGANSYGQLGLGHKEDVLSAQQLSDFCKSGCIKQIT-----GGGGH 134

Query: 131 SSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTED 190
           S+ + D+GSL+V G +K GQLGLG    E +  +  ++L G  I +V+ GW   +  TE+
Sbjct: 135 SAVVTDEGSLFVCGLNKDGQLGLGH-TEEVLYFTPCKSLLGCAIQQVACGWDFTIILTEN 193

Query: 191 GKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQE----------------ISSST 234
           G++   G ++ G++G     +   P    I ++ E  +E                 S + 
Sbjct: 194 GQVLSCGSNSFGQLG-----VPRGPRRCVIPQAIELLREKVVSIAAGLRHALAATASGTV 248

Query: 235 IEKAQKLVSEG--MEKEKYMPIIW---EPFLVEGVEVVDIAC---GFDHSLVLGRNGVLL 286
            +    L S G  +   + +P+     EP  V G+E     C   G DHS  L   G L 
Sbjct: 249 FQWGTGLASSGRRLCPGQTLPLFLTAKEPSTVTGLENSQAVCVLAGSDHSASLTDAGELY 308

Query: 287 SCGSNVYGQLGREKQDMGMFPVDINFHP------VSISSGLGHSLAICEVRSSNVTGGAR 340
             GSN +GQL  +   + + P  I  H        ++ SG  H +A        VTG   
Sbjct: 309 VWGSNKHGQLASQAAFL-LLPQRIEAHCFQNEKIAAVWSGWTHLVA------QTVTG--- 358

Query: 341 GIVSWGWNRSSQLGR 355
            + +WG     QLGR
Sbjct: 359 KVFTWGRADYGQLGR 373



 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 83/335 (24%), Positives = 132/335 (39%), Gaps = 66/335 (19%)

Query: 66  VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAF 125
           +  ++ G  HS  VT+ G+++  G N + QLG G  E    +   K + G     V   +
Sbjct: 125 IKQITGGGGHSAVVTDEGSLFVCGLNKDGQLGLGHTEEVLYFTPCKSLLGCAIQQVACGW 184

Query: 126 ASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHAL 185
              ++   + ++G +   G +  GQLG+ +     ++P  +E L  EK+V ++ G  HAL
Sbjct: 185 DFTII---LTENGQVLSCGSNSFGQLGVPRGPRRCVIPQAIELLR-EKVVSIAAGLRHAL 240

Query: 186 AQTEDGKLFGW--GYSADGRIGNLGKALESSPLDSNIDRSS-----ESDQEIS------- 231
           A T  G +F W  G ++ GR    G+ L   PL       S     E+ Q +        
Sbjct: 241 AATASGTVFQWGTGLASSGRRLCPGQTL---PLFLTAKEPSTVTGLENSQAVCVLAGSDH 297

Query: 232 SSTIEKAQKLVSEGMEKEK---------YMPIIWEPFLVEGVEVVDIACGFDHSLVLGRN 282
           S+++  A +L   G  K            +P   E    +  ++  +  G+ H +     
Sbjct: 298 SASLTDAGELYVWGSNKHGQLASQAAFLLLPQRIEAHCFQNEKIAAVWSGWTHLVAQTVT 357

Query: 283 GVLLSCGSNVYGQLGR----------EKQDMGM------------FPVDINFHPVSISSG 320
           G + + G   YGQLGR          EKQD  +             P         IS G
Sbjct: 358 GKVFTWGRADYGQLGRTVETREGWQSEKQDPSLPGSGPQKGTPSCLPCLTGA--TEISCG 415

Query: 321 LGHSLAICEVRSSNVTGGARGIV-SWGWNRSSQLG 354
             H+LA+            RG+  SWGWN     G
Sbjct: 416 SEHNLAV-----------IRGVCHSWGWNEHGMCG 439



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 62/244 (25%), Positives = 100/244 (40%), Gaps = 58/244 (23%)

Query: 133 AIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGK 192
           A+    +L+ WG +  GQLGLG            +      I +++ G GH+   T++G 
Sbjct: 84  AVPTAAALFAWGANSYGQLGLGHKEDVLSAQQLSDFCKSGCIKQITGGGGHSAVVTDEGS 143

Query: 193 LFGWGYSADGRIG--NLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEK 250
           LF  G + DG++G  +  + L  +P  S +                              
Sbjct: 144 LFVCGLNKDGQLGLGHTEEVLYFTPCKSLL------------------------------ 173

Query: 251 YMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREK-QDMGMFPVD 309
                       G  +  +ACG+D +++L  NG +LSCGSN +GQLG  +     + P  
Sbjct: 174 ------------GCAIQQVACGWDFTIILTENGQVLSCGSNSFGQLGVPRGPRRCVIPQA 221

Query: 310 INF---HPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGP-DNVPLVV 365
           I       VSI++GL H+LA      +  +G    +  WG   +S   R+ P   +PL +
Sbjct: 222 IELLREKVVSIAAGLRHALA------ATASG---TVFQWGTGLASSGRRLCPGQTLPLFL 272

Query: 366 EGLE 369
              E
Sbjct: 273 TAKE 276


>gi|354500120|ref|XP_003512150.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC3-like, partial
           [Cricetulus griseus]
          Length = 631

 Score = 95.9 bits (237), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 72/260 (27%), Positives = 121/260 (46%), Gaps = 22/260 (8%)

Query: 55  EPTRVPGLPSD-VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRV 113
           +P ++  L    +  V+ G  HSLA+++ G +++WG  ++ QLG    E       P+ +
Sbjct: 74  KPEQIGALADQHIVHVACGESHSLALSDRGQLFSWGAGSDGQLGLMTTEDSVAV--PRLI 131

Query: 114 EGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEK 173
           + L+Q  +           A+  DG  + WGK+  GQLGLGK+      P RV +L G  
Sbjct: 132 QKLNQQTILQVSCGNWHCLALAADGQFFTWGKNSHGQLGLGKEFPSQTSPQRVRSLEGIP 191

Query: 174 IVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSE----SDQE 229
           + +V+ G  H+ A +  G +FGWG +  G++G   +    SP    + R+ +    S  E
Sbjct: 192 LAQVAAGGAHSFALSLSGAVFGWGMNNAGQLGLSDEKDRESPCHVKLLRTQKVVYISCGE 251

Query: 230 ISSSTIEKAQKLVSEG-----------MEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLV 278
             ++ + K+  + + G           M  E     + E   + G EV  IACG  H+L 
Sbjct: 252 EHTAVLTKSGGVFTFGAGSCGQLGHGSMNDEVNPRRVLE---LMGSEVTQIACGRQHTLA 308

Query: 279 L-GRNGVLLSCGSNVYGQLG 297
               +G++ + G    GQLG
Sbjct: 309 FVPSSGLIYAFGCGARGQLG 328



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 64/244 (26%), Positives = 103/244 (42%), Gaps = 70/244 (28%)

Query: 136 DDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFG 195
           +DG ++  G + +GQLG  +   E   P ++ ALA + IV V+ G  H+LA ++ G+LF 
Sbjct: 51  EDGEVYTCGVNSKGQLGHER---EGNKPEQIGALADQHIVHVACGESHSLALSDRGQLFS 107

Query: 196 WGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPII 255
           WG  +DG++G +                     E S +     QKL  +           
Sbjct: 108 WGAGSDGQLGLM-------------------TTEDSVAVPRLIQKLNQQ----------- 137

Query: 256 WEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFHPV 315
                     ++ ++CG  H L L  +G   + G N +GQLG  K+    FP   +   V
Sbjct: 138 ---------TILQVSCGNWHCLALAADGQFFTWGKNSHGQLGLGKE----FPSQTSPQRV 184

Query: 316 ---------SISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLG------RMGPDN 360
                     +++G  HS A+      +++G   G   WG N + QLG      R  P +
Sbjct: 185 RSLEGIPLAQVAAGGAHSFAL------SLSGAVFG---WGMNNAGQLGLSDEKDRESPCH 235

Query: 361 VPLV 364
           V L+
Sbjct: 236 VKLL 239



 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 41/130 (31%), Positives = 66/130 (50%), Gaps = 23/130 (17%)

Query: 254 IIWEPFLVEGVE---VVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDI 310
           I+ EP +   V    + ++ACG +HS+ L  +G + +CG N  GQLG E++  G  P  I
Sbjct: 21  IVAEPQVCRFVSDRSIKEVACGGNHSVFLLEDGEVYTCGVNSKGQLGHERE--GNKPEQI 78

Query: 311 ----NFHPVSISSGLGHSLAICEVRSSNVTGGARG-IVSWGWNRSSQLGRMGPDN---VP 362
               + H V ++ G  HSLA+ +          RG + SWG     QLG M  ++   VP
Sbjct: 79  GALADQHIVHVACGESHSLALSD----------RGQLFSWGAGSDGQLGLMTTEDSVAVP 128

Query: 363 LVVEGLEGES 372
            +++ L  ++
Sbjct: 129 RLIQKLNQQT 138


>gi|326671858|ref|XP_685964.5| PREDICTED: hypothetical protein LOC557752 [Danio rerio]
          Length = 1413

 Score = 95.9 bits (237), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 90/324 (27%), Positives = 156/324 (48%), Gaps = 36/324 (11%)

Query: 32  FGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSA-GHYHSLAVTNNGAVWAWGR 90
           FG  + G LGL T  T       +PT V  L S+   ++A G  H+L  T+ G ++A G 
Sbjct: 60  FGSNNWGQLGLGTKTT-----VNKPTCVKALKSERVKLTACGRTHTLVFTSRGNLYACGG 114

Query: 91  NNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGV-VSSAIGDDGSLWVWGKSKRG 149
           NNE QLG G    R +++    VE  ++       A+G   S+A+  DG L++WG +  G
Sbjct: 115 NNEGQLGLGDCNDRTSFH---LVEFFNKQGPIKMLAAGSNTSAALTQDGRLYMWGDNSEG 171

Query: 150 QLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGK 209
           Q+GLGK+ + A+ P  V    G+++  VS G+ H+   T DG L+ +G    G++G   +
Sbjct: 172 QIGLGKE-SNALTPQEVS--VGKRVFWVSCGYYHSAFVTVDGALYTFGEKDSGKLGLSTE 228

Query: 210 ALESSPLDSNI----DRSSE-----------SDQEISSSTIEKAQKLVSEGMEKEKYMPI 254
            L +  +   +    DR  +           ++ E+ S  + +  +L       E  +P 
Sbjct: 229 KLANHKVPQQVTDIPDRVVQVACGGGHTVALTENEVYSFGLGQFGQLGHGTFIFESRLPR 288

Query: 255 IWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDM------GMFPV 308
           + E F      V   ACG +H+ ++  NG+L + G   +G+LG  +++        + P 
Sbjct: 289 VVEHF--RKGRVKHAACGENHTALITDNGLLYTFGDGRHGKLGLGEENFTNQFKPTLCPR 346

Query: 309 DINFHPVSISSGLGHSLAICEVRS 332
            +++H  S++ G  H L + + R+
Sbjct: 347 FLDYHVHSVTCGGCHMLVLAKPRT 370



 Score = 72.4 bits (176), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 84/311 (27%), Positives = 135/311 (43%), Gaps = 73/311 (23%)

Query: 69  VSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLD----QVNVCAA 124
           +S G  H+  VT NG ++ +G NN  QLG G   ++ T N P  V+ L     ++  C  
Sbjct: 41  ISCGDEHTALVTENGKLFMFGSNNWGQLGLG---TKTTVNKPTCVKALKSERVKLTACGR 97

Query: 125 FASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVK-VSFGWGH 183
             + V +S     G+L+  G +  GQLGLG D  +      VE    +  +K ++ G   
Sbjct: 98  THTLVFTSR----GNLYACGGNNEGQLGLG-DCNDRTSFHLVEFFNKQGPIKMLAAGSNT 152

Query: 184 ALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVS 243
           + A T+DG+L+ WG +++G+IG LGK  ES+ L         + QE+S            
Sbjct: 153 SAALTQDGRLYMWGDNSEGQIG-LGK--ESNAL---------TPQEVSVGKR-------- 192

Query: 244 EGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDM 303
                     + W            ++CG+ HS  +  +G L + G    G+LG   + +
Sbjct: 193 ----------VFW------------VSCGYYHSAFVTVDGALYTFGEKDSGKLGLSTEKL 230

Query: 304 GMFPV-----DINFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGR--- 355
               V     DI    V ++ G GH++A+ E            + S+G  +  QLG    
Sbjct: 231 ANHKVPQQVTDIPDRVVQVACGGGHTVALTE----------NEVYSFGLGQFGQLGHGTF 280

Query: 356 MGPDNVPLVVE 366
           +    +P VVE
Sbjct: 281 IFESRLPRVVE 291


>gi|307686853|ref|ZP_07629299.1| regulator of chromosome condensation RCC1 [Clostridium
           cellulovorans 743B]
          Length = 671

 Score = 95.9 bits (237), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 81/268 (30%), Positives = 129/268 (48%), Gaps = 60/268 (22%)

Query: 31  SFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGR 90
           S+G    G LG     TG   ++  P +VPG    +TS+S+G  HSL + N+G VW+WG 
Sbjct: 158 SWGQNQYGQLG-----TGNTTNSNIPLQVPGQIG-ITSISSGGGHSLVIKNDGTVWSWGC 211

Query: 91  NNEVQLGRGALESRATWNDPKRVEGLDQ-VNVCAAFASGVV-SSAIGDDGSLWVWGKSKR 148
           NN  QLG G   +  T   P ++ GL+  +NV A    GV+ S+A+  DG++W WG + R
Sbjct: 212 NNFGQLGNGTNSNNPT---PHQISGLNGIINVSA----GVIHSTALKSDGTVWNWGCNFR 264

Query: 149 GQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLG 208
           G+L  G  I ++ +P +   L G  I+ ++ GW  + A   DG  + WG +  G++GN  
Sbjct: 265 GELANGNKI-DSYIPVQANGLNG--IIAITAGWEFSSAIKSDGTFWVWGVNDYGQLGNGS 321

Query: 209 KALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVD 268
           K+  +SP+            ++SS                            + G+  +D
Sbjct: 322 KSDVTSPM------------QVSS----------------------------LSGITAID 341

Query: 269 IACGFDHSLVLGRNGVLLSCGSNVYGQL 296
              G  +++ L  +G + + G N YGQL
Sbjct: 342 --TGATYTVALKTDGNIFAFGENTYGQL 367



 Score = 92.0 bits (227), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 87/309 (28%), Positives = 135/309 (43%), Gaps = 67/309 (21%)

Query: 68  SVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFAS 127
           +VSAG+  ++A+ N+G VW+WG N    LG G   +    N P +V+GL+ +   +A  +
Sbjct: 39  AVSAGNTTTIALKNDGTVWSWGFNQNGHLGDGTTSNS---NSPVQVKGLNGITAISAGWA 95

Query: 128 GVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQ 187
             V  A+  DG++W WG    G+LG G + +    P+ +  L G  I  +S GW H LA 
Sbjct: 96  HFV--ALKSDGTVWTWGVGYSGELGDGTN-SLRTTPAPINGLTG--ITAISAGWNHTLAL 150

Query: 188 TEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGME 247
             DG L+ WG +  G++G        +  +SNI                           
Sbjct: 151 KADGTLWSWGQNQYGQLG------TGNTTNSNI--------------------------- 177

Query: 248 KEKYMPIIWEPFLVEG-VEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMF 306
                     P  V G + +  I+ G  HSLV+  +G + S G N +GQLG         
Sbjct: 178 ----------PLQVPGQIGITSISSGGGHSLVIKNDGTVWSWGCNNFGQLGNGTNSNNPT 227

Query: 307 PVDIN--FHPVSISSGLGHSLAICEVRSSNVTGGARGIV-SWGWNRSSQL--GRMGPDNV 361
           P  I+     +++S+G+ HS A+           + G V +WG N   +L  G      +
Sbjct: 228 PHQISGLNGIINVSAGVIHSTAL----------KSDGTVWNWGCNFRGELANGNKIDSYI 277

Query: 362 PLVVEGLEG 370
           P+   GL G
Sbjct: 278 PVQANGLNG 286


>gi|395834129|ref|XP_003790065.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC3 [Otolemur
           garnettii]
          Length = 1050

 Score = 95.9 bits (237), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 79/284 (27%), Positives = 127/284 (44%), Gaps = 52/284 (18%)

Query: 66  VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAF 125
           +  V+ G  HSLA+++ G +++WG  ++ QLG    E       P+ ++ L+Q  +    
Sbjct: 86  IIHVACGESHSLALSDRGQLFSWGAGSDGQLGLTTTEDSVAV--PRLIQKLNQQTILQVS 143

Query: 126 ASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHAL 185
                  A+  DG  + WGK+  GQLGLGK+      P RV +L G  + +V+ G  H+ 
Sbjct: 144 CGNWHCLALAADGQFFTWGKNSHGQLGLGKEFPSQASPQRVRSLEGIPLAQVAAGGAHSF 203

Query: 186 AQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEG 245
           A +  G +FGWG +  G++G                 S E D+E S   ++         
Sbjct: 204 ALSLSGAVFGWGMNNAGQLG----------------LSDEKDRE-SPCHVK--------- 237

Query: 246 MEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGM 305
                         L+   +VV I+CG +H+ VL +NG + + G+   GQLG +  +  +
Sbjct: 238 --------------LLRTQKVVYISCGEEHTAVLTKNGGVFTFGAGSCGQLGHDSMNDEV 283

Query: 306 FPVDI----NFHPVSISSGLGHSLAICEVRSSNVT----GGARG 341
            P  +          I+ G  H+LA   V SS +      GARG
Sbjct: 284 NPRRVLELMGSEVTQIACGRQHTLAF--VPSSGLIYAFGCGARG 325



 Score = 46.2 bits (108), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 36/115 (31%), Positives = 58/115 (50%), Gaps = 20/115 (17%)

Query: 266 VVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDI----NFHPVSISSGL 321
           V ++ACG +HS+ L   G + +CG N  GQLG E++  G  P  I    + H + ++ G 
Sbjct: 36  VKEVACGGNHSVFLLEGGEVYTCGLNTKGQLGHERE--GNKPEQIGALADQHIIHVACGE 93

Query: 322 GHSLAICEVRSSNVTGGARG-IVSWGWNRSSQLGRMGPDN---VPLVVEGLEGES 372
            HSLA+ +          RG + SWG     QLG    ++   VP +++ L  ++
Sbjct: 94  SHSLALSD----------RGQLFSWGAGSDGQLGLTTTEDSVAVPRLIQKLNQQT 138


>gi|357156536|ref|XP_003577490.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC4-like
           [Brachypodium distachyon]
          Length = 422

 Score = 95.9 bits (237), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 103/346 (29%), Positives = 155/346 (44%), Gaps = 51/346 (14%)

Query: 32  FGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDV----TSVSAGHYHSLAVTNNGAVWA 87
           +G+G  G LGL     G     + PT  P   +       S++ G  H+L +T +G V+A
Sbjct: 39  WGNGDYGRLGL-----GALESRWNPTACPFFLARAGDPPASLACGGAHTLFLTQSGRVFA 93

Query: 88  WGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSK 147
            G N+  QLG G+  +     DP  V G  +  V    A    S A+  DG L+VWGK+ 
Sbjct: 94  TGLNDFGQLGIGSSTTHIV--DPIEVTGFGE-KVVQISAGNHHSCAVTADGELFVWGKNS 150

Query: 148 RGQLGLGKDITEAI-VPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGN 206
            GQLGLGK + + +  P +V+ LA  ++  V+ G  H++A TE G+   WG +  GR+G+
Sbjct: 151 SGQLGLGKGVGKVVSTPRKVDYLADVRVRMVALGSEHSIAVTEGGEALSWGAAGAGRLGH 210

Query: 207 ------LGKALESSPLDSNIDRSSESDQ-------EISSSTIEKAQKLVSEGMEKEKYM- 252
                 LG  + SS     + ++ +  +        + S+ I++   L   G + EK   
Sbjct: 211 GHKSSILGFGMVSSEYTPRLIKNLDGVKIKRIAAGMLHSACIDEKGTLFIFGQKTEKVFG 270

Query: 253 -----PIIWEPFLVEGVEVV-DIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMF 306
                P    P +VE ++   ++ACG  H+  L   G L S GSN  G LG     M   
Sbjct: 271 RSNDAP---RPTVVEEIQFSEEVACGGYHTCALTDGGDLYSWGSNENGCLGLGVTGMVRS 327

Query: 307 PVDINFH----PVS-ISSGLGHSLAICEVRSSNVTGGARGIVSWGW 347
           P  +       PVS +S G  H+  I              I +WGW
Sbjct: 328 PEVLRSTLFKLPVSKVSCGWKHTAVIS----------GEDIYTWGW 363



 Score = 77.8 bits (190), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 84/339 (24%), Positives = 140/339 (41%), Gaps = 41/339 (12%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAW 88
           V + G    G LG+ +S T +     +P  V G    V  +SAG++HS AVT +G ++ W
Sbjct: 91  VFATGLNDFGQLGIGSSTTHI----VDPIEVTGFGEKVVQISAGNHHSCAVTADGELFVW 146

Query: 89  GRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKR 148
           G+N+  QLG G    +   + P++V+ L  V V         S A+ + G    WG +  
Sbjct: 147 GKNSSGQLGLGKGVGKVV-STPRKVDYLADVRVRMVALGSEHSIAVTEGGEALSWGAAGA 205

Query: 149 GQLGLGKD--------ITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSA 200
           G+LG G          ++    P  ++ L G KI +++ G  H+    E G LF +G   
Sbjct: 206 GRLGHGHKSSILGFGMVSSEYTPRLIKNLDGVKIKRIAAGMLHSACIDEKGTLFIFGQKT 265

Query: 201 DGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYM-------- 252
           +   G    A   + ++        +     +  +     L S G  +   +        
Sbjct: 266 EKVFGRSNDAPRPTVVEEIQFSEEVACGGYHTCALTDGGDLYSWGSNENGCLGLGVTGMV 325

Query: 253 --PIIWEPFLVEGVEVVDIACGFDHSLVL-----------GRNGVLLSCGSNVYGQLGRE 299
             P +    L + + V  ++CG+ H+ V+           G NG     G +  GQLG  
Sbjct: 326 RSPEVLRSTLFK-LPVSKVSCGWKHTAVISGEDIYTWGWGGANGTFFEEGQSSGGQLG-H 383

Query: 300 KQDMGMF-PVDI----NFHPVSISSGLGHSLAICEVRSS 333
             D+  F P+ +    N   V +S G  H+ AI E + +
Sbjct: 384 GNDVDYFEPMMVELGRNARAVHVSCGFNHTGAIFEYKEN 422


>gi|410966268|ref|XP_004001548.1| PREDICTED: LOW QUALITY PROTEIN: protein RCC2 [Felis catus]
          Length = 521

 Score = 95.9 bits (237), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 82/293 (27%), Positives = 130/293 (44%), Gaps = 35/293 (11%)

Query: 75  HSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAI 134
           HSL +T  G +W+WGRN + QLG G  +       PK +EGL    + +A      + A+
Sbjct: 160 HSLLITTEGTLWSWGRNEKGQLGHGDTKRVEA---PKLIEGLSHEVIVSAACGRNHTLAL 216

Query: 135 GDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLF 194
            + GS++ +G++K GQLGLG        P+++    G+ I K++ G   ++     G L+
Sbjct: 217 TETGSVFAFGENKMGQLGLGNQTDAVPSPAQI-MYNGQPITKMACGAEFSMIMDCKGNLY 275

Query: 195 GWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPI 254
            +G    G++G+            N D    +  +      E   + V+  +EK K   I
Sbjct: 276 SFGCPEYGQLGH------------NSDGKFIARAQRIEYDCELVPRRVAIFIEKTKDGQI 323

Query: 255 IWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFH- 313
           +  P +V    V D+ACG +H+LVL     + S G   YG+LG  +Q   M P  +    
Sbjct: 324 LPVPNVV----VRDVACGANHTLVLDSQKRVFSWGFGGYGRLGHAEQKDEMVPRLVKLFD 379

Query: 314 -----PVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPDNV 361
                   I +G   S A+ EV          G+  WG   +S+   M P  V
Sbjct: 380 FPGRGAAQIYAGYTCSFAVSEV---------GGLFFWGATNTSRESTMYPKAV 423



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 56/186 (30%), Positives = 80/186 (43%), Gaps = 31/186 (16%)

Query: 56  PTRVPGLPSDV-TSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVE 114
           P  + GL  +V  S + G  H+LA+T  G+V+A+G N   QLG G      T   P   +
Sbjct: 192 PKLIEGLSHEVIVSAACGRNHTLALTETGSVFAFGENKMGQLGLG----NQTDAVPSPAQ 247

Query: 115 GLDQVNVCAAFASGVVSSAIGD-DGSLWVWGKSKRGQLGL---GKDITEA--------IV 162
            +         A G   S I D  G+L+ +G  + GQLG    GK I  A        +V
Sbjct: 248 IMYNGQPITKMACGAEFSMIMDCKGNLYSFGCPEYGQLGHNSDGKFIARAQRIEYDCELV 307

Query: 163 PSRVEALAGEK-------------IVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGK 209
           P RV A+  EK             +  V+ G  H L      ++F WG+   GR+G+  +
Sbjct: 308 PRRV-AIFIEKTKDGQILPVPNVVVRDVACGANHTLVLDSQKRVFSWGFGGYGRLGHAEQ 366

Query: 210 ALESSP 215
             E  P
Sbjct: 367 KDEMVP 372


>gi|344284757|ref|XP_003414131.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC3 [Loxodonta
           africana]
          Length = 1050

 Score = 95.9 bits (237), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 88/324 (27%), Positives = 141/324 (43%), Gaps = 54/324 (16%)

Query: 28  AVVSFGDGSQGALGLPTS-LTGVGGDAYEPTRVPGLPSD-VTSVSAGHYHSLAVTNNGAV 85
           +V    DG     GL T    G   +  +P ++  L    +  V+ G  HSLA+++ G +
Sbjct: 46  SVFLLEDGEVYTCGLNTKGQLGHEREGNKPEQIGALADQHIVHVACGESHSLALSDRGQL 105

Query: 86  WAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGK 145
           ++WG  ++ QLG    E       P+ ++ L+Q  +           A+  DG  + WGK
Sbjct: 106 FSWGAGSDGQLGLMTTEDSVAV--PRLIQKLNQQTILQVSCGNWHCLALAADGQFFTWGK 163

Query: 146 SKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIG 205
           +  GQLGLGK+      P RV +L G  + +V+ G  H+ A +  G +FGWG +  G++G
Sbjct: 164 NSHGQLGLGKEFPSQASPQRVRSLEGIPLAQVTAGGAHSFALSLSGAVFGWGMNNAGQLG 223

Query: 206 NLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVE 265
                            S E D+E S   ++                       L+   +
Sbjct: 224 ----------------LSDEKDRE-SPCHVK-----------------------LLRTQK 243

Query: 266 VVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDI----NFHPVSISSGL 321
           VV I+CG +H+ VL +NG + + G+   GQLG +  +  + P  +          I+ G 
Sbjct: 244 VVYISCGEEHTAVLTKNGGVFTFGAGSCGQLGHDSMNDEVNPRRVLELMGSEVTQIACGR 303

Query: 322 GHSLAICEVRSSNVT----GGARG 341
            H+LA   V SS +      GARG
Sbjct: 304 QHTLAF--VPSSGLIYAFGCGARG 325



 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 38/115 (33%), Positives = 60/115 (52%), Gaps = 20/115 (17%)

Query: 266 VVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDI----NFHPVSISSGL 321
           V ++ACG +HS+ L  +G + +CG N  GQLG E++  G  P  I    + H V ++ G 
Sbjct: 36  VKEVACGGNHSVFLLEDGEVYTCGLNTKGQLGHERE--GNKPEQIGALADQHIVHVACGE 93

Query: 322 GHSLAICEVRSSNVTGGARG-IVSWGWNRSSQLGRMGPDN---VPLVVEGLEGES 372
            HSLA+ +          RG + SWG     QLG M  ++   VP +++ L  ++
Sbjct: 94  SHSLALSD----------RGQLFSWGAGSDGQLGLMTTEDSVAVPRLIQKLNQQT 138


>gi|412992371|emb|CCO20084.1| predicted protein [Bathycoccus prasinos]
          Length = 851

 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 94/312 (30%), Positives = 134/312 (42%), Gaps = 48/312 (15%)

Query: 66  VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAF 125
           VT V+ G  H+LAVT +G +++ GR    QLG G            R + L  ++V    
Sbjct: 440 VTKVACGSNHTLAVTVDGQLFSCGRGRHGQLGLGYFHDGGPLT---RCDALRGMHVTKVA 496

Query: 126 ASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIV---------PSRVEALAGEK--- 173
           A G  S  I DDG +W WG   +GQLGLG D+  A           P  VE+L  E    
Sbjct: 497 AGGQHSVCITDDGRVWSWGDCTKGQLGLG-DLRFATSAGWHTGVPWPCLVESLCEENLSS 555

Query: 174 ---------IVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNI--DR 222
                    +V+VS G  H +  T+ GKLF  G  + G+I  L   L+     +      
Sbjct: 556 FDLLDGKDSVVQVSCGKMHTMFVTQSGKLFACGNGSYGQIAGLAPTLKEQKSRNGTVGGY 615

Query: 223 SSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEG---VEVVDIACGFDHSLVL 279
           +  + ++I      + Q   +  M + +  P +       G     V  + CG +HSLVL
Sbjct: 616 NQYTPKQIQIKHHVRKQDGTTL-MHRVRACPCVNANQPSNGNVICRVAQVTCGGNHSLVL 674

Query: 280 GRNGVLLSCGSNVYGQLGR-EKQDMGMFPVDINFHP-----VSISSGLGHSLAI------ 327
              G + + G+N YGQLG  + +   +F     FH      VSI++G  HS AI      
Sbjct: 675 TGCGAVFATGTNSYGQLGLGDVESRDVFSRVWRFHDKKLNVVSITTGAHHSAAIVSNQTV 734

Query: 328 -----CEVRSSN 334
                CE R SN
Sbjct: 735 LKETDCEERISN 746



 Score = 69.3 bits (168), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 64/240 (26%), Positives = 111/240 (46%), Gaps = 30/240 (12%)

Query: 63  PSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRV----EGLDQ 118
           P+    VSAG  H   +T NG ++ WG  +  + G            P++V    E L +
Sbjct: 382 PTTFVQVSAGGSHCAGLTKNGTLYTWGLASSGETGHHHTPIEVAI--PRKVFSMAENLHR 439

Query: 119 VNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVS 178
           V   A  ++  +  A+  DG L+  G+ + GQLGLG    +    +R +AL G  + KV+
Sbjct: 440 VTKVACGSNHTL--AVTVDGQLFSCGRGRHGQLGLGY-FHDGGPLTRCDALRGMHVTKVA 496

Query: 179 FGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKA 238
            G  H++  T+DG+++ WG    G++G LG        D     S+     +    +   
Sbjct: 497 AGGQHSVCITDDGRVWSWGDCTKGQLG-LG--------DLRFATSAGWHTGVPWPCL--V 545

Query: 239 QKLVSEGMEKEKYMPIIWEPFLVEGVE-VVDIACGFDHSLVLGRNGVLLSCGSNVYGQLG 297
           + L  E +             L++G + VV ++CG  H++ + ++G L +CG+  YGQ+ 
Sbjct: 546 ESLCEENLSSFD---------LLDGKDSVVQVSCGKMHTMFVTQSGKLFACGNGSYGQIA 596


>gi|402571800|ref|YP_006621143.1| RCC1 domain-containing protein, alpha-tubulin suppressor
           [Desulfosporosinus meridiei DSM 13257]
 gi|402252997|gb|AFQ43272.1| RCC1 domain-containing protein, alpha-tubulin suppressor
           [Desulfosporosinus meridiei DSM 13257]
          Length = 740

 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 102/337 (30%), Positives = 151/337 (44%), Gaps = 55/337 (16%)

Query: 64  SDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLG--RGALESRATWNDPKRVEGLDQVNV 121
           + ++++SAG  HSLA+ ++G+VWAWG N+E QLG  R  L + AT   P +V   D  NV
Sbjct: 47  ASLSTISAGFVHSLALDSDGSVWAWGDNSEGQLGNNRSDLHNSAT---PVKVN--DLTNV 101

Query: 122 CAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGK--------------DITEAIVPSRVE 167
            A  A G  S A+  DG++W WG ++ GQ G GK              +   +  P +V+
Sbjct: 102 IAVAAGGAHSLALKKDGTVWGWGNNEYGQGGYGKIELIAGGPSYYMPDEFLRSYTPLQVQ 161

Query: 168 ALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADG-RIGNLGKALESSPLDSNIDRSSES 226
            L    I+ ++ G  ++LA   DG ++ WG    G ++ N      + P    ID     
Sbjct: 162 GLT--DIIAIAAGMDYSLALKSDGTVWAWGSEPYGNQLTNTSGGFSNIPAQIQIDSYGNK 219

Query: 227 DQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLV--EGV--------------EVVDIA 270
             +I+  +   A  L    ++K+  +   W   LV  +GV              +VV I+
Sbjct: 220 LTDITKISAGSAFAL---ALKKDGTV-WTWGGLLVDDQGVHNSVAHAQQVLSLSDVVSIS 275

Query: 271 CGFDHSLVLGRNGVLLSCGSNVYGQLG-REKQDMGMFPVDINFHPVSISSGLGHSLAICE 329
            G+ HSL L  +G +   GSN   QLG R   +    P+ I        SGL H   I  
Sbjct: 276 AGYSHSLALKSDGTVWGWGSNDLFQLGDRNSAENWSTPLQI--------SGLNHVHGIVA 327

Query: 330 VRSSNVTGGARGIV-SWGWNRSSQLGRMGP-DNVPLV 364
               ++     G V SWG N   QLG     +  PLV
Sbjct: 328 GTYLSMALKTDGTVWSWGANIWGQLGNAADFETEPLV 364



 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 53/144 (36%), Positives = 84/144 (58%), Gaps = 5/144 (3%)

Query: 64  SDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCA 123
           SDV S+SAG+ HSLA+ ++G VW WG N+  QLG     S   W+ P ++ GL+ V+   
Sbjct: 269 SDVVSISAGYSHSLALKSDGTVWGWGSNDLFQLGD--RNSAENWSTPLQISGLNHVH--G 324

Query: 124 AFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDI-TEAIVPSRVEALAGEKIVKVSFGWG 182
             A   +S A+  DG++W WG +  GQLG   D  TE +V + V+    + +  ++ G+G
Sbjct: 325 IVAGTYLSMALKTDGTVWSWGANIWGQLGNAADFETEPLVKNPVQVKELKNVTAIASGFG 384

Query: 183 HALAQTEDGKLFGWGYSADGRIGN 206
             +A+   G ++ WG ++DG+ GN
Sbjct: 385 FNIARQNGGSIWAWGVNSDGQHGN 408



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 38/101 (37%), Positives = 54/101 (53%), Gaps = 6/101 (5%)

Query: 56  PTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGA-LESRATWNDPKRVE 114
           P ++ GL + V  + AG Y S+A+  +G VW+WG N   QLG  A  E+     +P +V+
Sbjct: 313 PLQISGL-NHVHGIVAGTYLSMALKTDGTVWSWGANIWGQLGNAADFETEPLVKNPVQVK 371

Query: 115 GLDQVNVCAAFASGV-VSSAIGDDGSLWVWGKSKRGQLGLG 154
            L  V    A ASG   + A  + GS+W WG +  GQ G G
Sbjct: 372 ELKNVT---AIASGFGFNIARQNGGSIWAWGVNSDGQHGNG 409


>gi|302855419|ref|XP_002959204.1| hypothetical protein VOLCADRAFT_70529 [Volvox carteri f.
           nagariensis]
 gi|300255434|gb|EFJ39741.1| hypothetical protein VOLCADRAFT_70529 [Volvox carteri f.
           nagariensis]
          Length = 367

 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 87/281 (30%), Positives = 124/281 (44%), Gaps = 58/281 (20%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSD-VTSVSAGHYHSLAVTNNGAVWA 87
           + +FG    G LGL     G   D   P  V  L  + V SV+ G  HSLA T +G V++
Sbjct: 139 LFTFGRNQNGQLGL-----GHTNDCLSPQLVVALQGERVRSVACGSEHSLAATESGTVFS 193

Query: 88  WGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSK 147
           WG      LG G  + R     P RV GL+ + + +A      S+ + +DG ++ +G SK
Sbjct: 194 WGWGRYGNLGDGESQDRYL---PTRVVGLEGIRMVSAECGWRHSAVVSEDGRVFTFGWSK 250

Query: 148 RGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNL 207
            GQLG G D T+  VP +V AL   +I  V+ GW H +A    G L+GWG++  G++G  
Sbjct: 251 YGQLGHG-DHTDRTVPCQVAALRHTRISSVAGGWRHTMAADSSGNLYGWGWNKFGQLG-- 307

Query: 208 GKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGV--- 264
                   L  + DR S                                 P LV G    
Sbjct: 308 --------LGDSSDRPS---------------------------------PVLVGGALAG 326

Query: 265 -EVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGR-EKQDM 303
             V  + CG+ H++ +   G + S G  V GQLG   +QD+
Sbjct: 327 QRVSLVTCGWRHTVAVTEGGRVYSWGRGVNGQLGHGAEQDL 367



 Score = 95.1 bits (235), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 86/309 (27%), Positives = 139/309 (44%), Gaps = 36/309 (11%)

Query: 66  VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAF 125
           VT+VS G  HS+A+ + G V +WGR  + QLG G  +       PK +  L    + +  
Sbjct: 15  VTAVSCGSSHSVAILSCGIVTSWGRGEDGQLGHGQADECLA---PKAISTLTDAGIESVV 71

Query: 126 ASGVVSSAIG-DDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHA 184
                + A+    G ++ WG    G+LG G D  +  VP  +E  +G  + +V+ G  H 
Sbjct: 72  CGAEYTIAVAPSRGQVYSWGWGDFGRLGHG-DCNDVFVPRPIEFFSGRPVHRVACGDTHT 130

Query: 185 LAQTEDGKLFGWGYSADGRIGNLGKALES-SP-----LDSNIDRSSESDQEISSSTIEKA 238
           L    +G+LF +G + +G++G LG   +  SP     L     RS     E S +  E  
Sbjct: 131 LVVAGEGELFTFGRNQNGQLG-LGHTNDCLSPQLVVALQGERVRSVACGSEHSLAATESG 189

Query: 239 QKL---------VSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCG 289
                       + +G  +++Y+P       +EG+ +V   CG+ HS V+  +G + + G
Sbjct: 190 TVFSWGWGRYGNLGDGESQDRYLPT--RVVGLEGIRMVSAECGWRHSAVVSEDGRVFTFG 247

Query: 290 SNVYGQLGREKQDMGMFPVDI----NFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSW 345
            + YGQLG         P  +    +    S++ G  H++A     S N+ G       W
Sbjct: 248 WSKYGQLGHGDHTDRTVPCQVAALRHTRISSVAGGWRHTMAA--DSSGNLYG-------W 298

Query: 346 GWNRSSQLG 354
           GWN+  QLG
Sbjct: 299 GWNKFGQLG 307



 Score = 78.6 bits (192), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 66/186 (35%), Positives = 95/186 (51%), Gaps = 12/186 (6%)

Query: 23  SASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPS-DVTSVSAGHYHSLAVTN 81
           + SGT V S+G G  G LG      G   D Y PTRV GL    + S   G  HS  V+ 
Sbjct: 186 TESGT-VFSWGWGRYGNLG-----DGESQDRYLPTRVVGLEGIRMVSAECGWRHSAVVSE 239

Query: 82  NGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLW 141
           +G V+ +G +   QLG G    R     P +V  L    + +       + A    G+L+
Sbjct: 240 DGRVFTFGWSKYGQLGHGDHTDRTV---PCQVAALRHTRISSVAGGWRHTMAADSSGNLY 296

Query: 142 VWGKSKRGQLGLGKDITEAIVPSRVE-ALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSA 200
            WG +K GQLGLG D ++   P  V  ALAG+++  V+ GW H +A TE G+++ WG   
Sbjct: 297 GWGWNKFGQLGLG-DSSDRPSPVLVGGALAGQRVSLVTCGWRHTVAVTEGGRVYSWGRGV 355

Query: 201 DGRIGN 206
           +G++G+
Sbjct: 356 NGQLGH 361


>gi|443697240|gb|ELT97775.1| hypothetical protein CAPTEDRAFT_180059 [Capitella teleta]
          Length = 453

 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 57/171 (33%), Positives = 94/171 (54%), Gaps = 9/171 (5%)

Query: 56  PTRVPGLPS----DVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPK 111
           PT  P   S     +T+++ G +HS+A+++ G ++AWG+NN  Q+G G   ++ T   P+
Sbjct: 118 PTPTPVTSSLLGKRITAIACGSHHSMALSSEGEIFAWGQNNCGQVGSGTTSNQPT---PR 174

Query: 112 RVEGLDQVNVCAAFASGVVSS-AIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALA 170
           +V        C + A G  SS A  D G ++ WG +  GQLGLG +I +   P R+  L 
Sbjct: 175 KVTACIGSKKCISIACGQTSSIAAFDTGEVFGWGYNGNGQLGLGNNINQP-NPCRLVVLN 233

Query: 171 GEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNID 221
              I +++ G+ H L  T++G L+ WG ++ G++G   KA   SP+   +D
Sbjct: 234 NVFITQIACGYAHTLGLTDEGSLYAWGANSYGQLGTGNKANMISPVRIAVD 284



 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 94/332 (28%), Positives = 143/332 (43%), Gaps = 70/332 (21%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAY---EPTRVPGL-PSDVTSVSAGH-YHSLAVTNNG 83
           V S G    G LGL       G DA    EP +V  L   ++ S + G   H LA TN G
Sbjct: 44  VYSLGSNCSGCLGL-------GSDAMSGLEPRKVEQLCKKNIVSFAYGSGPHVLATTNAG 96

Query: 84  AVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSS-AIGDDGSLWV 142
            V++WG N   QLG G+     T   P  V          A A G   S A+  +G ++ 
Sbjct: 97  EVYSWGHNGYCQLGNGSTNQGPT---PTPVTSSLLGKRITAIACGSHHSMALSSEGEIFA 153

Query: 143 WGKSKRGQLGLGKDITEAIVPSRVEALAG-EKIVKVSFGWGHALAQTEDGKLFGWGYSAD 201
           WG++  GQ+G G    +   P +V A  G +K + ++ G   ++A  + G++FGWGY+ +
Sbjct: 154 WGQNNCGQVGSGTTSNQP-TPRKVTACIGSKKCISIACGQTSSIAAFDTGEVFGWGYNGN 212

Query: 202 GRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLV 261
           G++G          L +NI++ +               +LV                 ++
Sbjct: 213 GQLG----------LGNNINQPNPC-------------RLV-----------------VL 232

Query: 262 EGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGR-EKQDMGMFPVDINFHPVSISSG 320
             V +  IACG+ H+L L   G L + G+N YGQLG   K +M          PV I+  
Sbjct: 233 NNVFITQIACGYAHTLGLTDEGSLYAWGANSYGQLGTGNKANM--------ISPVRIAVD 284

Query: 321 LGHSLAICEVRSSNVTGG---ARGIVSWGWNR 349
           LG  + I     ++++     A  +  WG  R
Sbjct: 285 LGRFVEIAATHYNHLSAALTQAGKVFMWGQCR 316



 Score = 61.2 bits (147), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 59/243 (24%), Positives = 97/243 (39%), Gaps = 46/243 (18%)

Query: 122 CAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGW 181
           C   ++G  +  I +D  ++  G +  G LGLG D    + P +VE L  + IV  ++G 
Sbjct: 26  CVLGSAGNEAIVITNDDEVYSLGSNCSGCLGLGSDAMSGLEPRKVEQLCKKNIVSFAYGS 85

Query: 182 G-HALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQK 240
           G H LA T  G+++ WG++   ++GN       +P              ++SS +     
Sbjct: 86  GPHVLATTNAGEVYSWGHNGYCQLGNGSTNQGPTP------------TPVTSSLL----- 128

Query: 241 LVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREK 300
                                 G  +  IACG  HS+ L   G + + G N  GQ+G   
Sbjct: 129 ----------------------GKRITAIACGSHHSMALSSEGEIFAWGQNNCGQVGSGT 166

Query: 301 QDMGMFPVDINFHPVSISSGLGHSLAICEVRSSNVTGGARG-IVSWGWNRSSQLGRMGPD 359
                 P       V+   G    ++I   ++S++     G +  WG+N + QLG     
Sbjct: 167 TSNQPTP-----RKVTACIGSKKCISIACGQTSSIAAFDTGEVFGWGYNGNGQLGLGNNI 221

Query: 360 NVP 362
           N P
Sbjct: 222 NQP 224


>gi|410975285|ref|XP_003994063.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC4-like, partial
           [Felis catus]
          Length = 621

 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 78/316 (24%), Positives = 137/316 (43%), Gaps = 49/316 (15%)

Query: 55  EPTRVPGLPS-DVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRV 113
           +P +V  L + ++ +VS G  H+LA+ + G V+AWG +++ QLG   L S      P+ +
Sbjct: 74  KPEQVVALDAQNIVAVSCGEAHTLALNDKGQVYAWGLDSDGQLG--LLGSEECIRVPRNI 131

Query: 114 EGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEK 173
           + L  + +         S A+     ++ WG++K GQLGLG D  +   P  +++L G  
Sbjct: 132 KSLSDIQIVQVACGYYHSLALSKASEVFCWGQNKYGQLGLGIDCKKQASPQLIKSLLGIP 191

Query: 174 IVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSS 233
            ++V+ G  H+   T  G +FGWG +  G++G          L+                
Sbjct: 192 FMQVAAGGAHSFVLTLSGAIFGWGRNKFGQLG----------LND--------------- 226

Query: 234 TIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVY 293
                        E ++Y+P + +    +  ++V I CG DH+  L + G + + G+  Y
Sbjct: 227 -------------ENDRYVPNLLKSLRTQ--KIVYICCGEDHTAALTKEGGVFTFGAGGY 271

Query: 294 GQLGREKQDMGMFPVDINFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQL 353
           GQLG       + P  +      +   +   +A     +S     +  I S+G   + QL
Sbjct: 272 GQLGHNSTSHEINPRKV----FELMGSIVTQIACGRQHTSAFVPSSGRIYSFGLGGNGQL 327

Query: 354 GRMGPDN--VPLVVEG 367
           G     N   P  V+G
Sbjct: 328 GTGSTSNRKSPFTVKG 343



 Score = 72.0 bits (175), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 68/275 (24%), Positives = 112/275 (40%), Gaps = 57/275 (20%)

Query: 85  VWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWG 144
           +  WG  +  QLG G ++      +P++ +      V         +  + DDG+++  G
Sbjct: 1   MLCWGNASFGQLGLGGIDEEIVL-EPRKSDFFINKKVRDVGCGLRHTVFVLDDGTVYTCG 59

Query: 145 KSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRI 204
            +  GQLG  K   +   P +V AL  + IV VS G  H LA  + G+++ WG  +DG++
Sbjct: 60  CNDLGQLGHEKSRKK---PEQVVALDAQNIVAVSCGEAHTLALNDKGQVYAWGLDSDGQL 116

Query: 205 GNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGV 264
           G LG   E   +  NI   S+                                      +
Sbjct: 117 GLLGSE-ECIRVPRNIKSLSD--------------------------------------I 137

Query: 265 EVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLG-----REKQDMGMFPVDINFHPVSISS 319
           ++V +ACG+ HSL L +   +   G N YGQLG     +++    +    +    + +++
Sbjct: 138 QIVQVACGYYHSLALSKASEVFCWGQNKYGQLGLGIDCKKQASPQLIKSLLGIPFMQVAA 197

Query: 320 GLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLG 354
           G  HS  +          GA  I  WG N+  QLG
Sbjct: 198 GGAHSFVL-------TLSGA--IFGWGRNKFGQLG 223


>gi|357520081|ref|XP_003630329.1| RCC1 and BTB domain-containing protein [Medicago truncatula]
 gi|355524351|gb|AET04805.1| RCC1 and BTB domain-containing protein [Medicago truncatula]
          Length = 230

 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 75/246 (30%), Positives = 115/246 (46%), Gaps = 43/246 (17%)

Query: 63  PSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVC 122
           P  V  +SAG  H++A+     V +WGR  + QLG G  + R         +G D V+V 
Sbjct: 11  PPHVLLISAGASHTVALLTGNVVCSWGRGEDGQLGHGDTDDRLLPTKLSAFDGQDIVSVT 70

Query: 123 AAFASGVVSSAIGDDGSLW-VWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGW 181
                 V  S  G D   W  WG+++ G+LGLG    ++ VP ++ A  G +I  V+ G 
Sbjct: 71  CGADYTVARSKSGKDVYSWGCWGRNQNGELGLGT-TKDSHVPQKILAFEGIRIKMVAAGA 129

Query: 182 GHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKL 241
            H++A TEDG L+GWG+   GR GNLG        D+N DR                   
Sbjct: 130 EHSVAITEDGDLYGWGW---GRYGNLGLG------DTN-DR------------------- 160

Query: 242 VSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQ 301
                       +I E   ++G ++V ++CG+ H++ +  +G L + G + YGQLG    
Sbjct: 161 ------------LIPEKVNIDGDKIVMVSCGWRHTISISSSGGLYTHGWSKYGQLGHGDF 208

Query: 302 DMGMFP 307
           +  + P
Sbjct: 209 EDCLVP 214



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 59/187 (31%), Positives = 95/187 (50%), Gaps = 15/187 (8%)

Query: 25  SGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLP-SDVTSVSAGHYHSLAVTNNG 83
           +G  V S+G G  G LG      G   D   PT++      D+ SV+ G  +++A + +G
Sbjct: 29  TGNVVCSWGRGEDGQLG-----HGDTDDRLLPTKLSAFDGQDIVSVTCGADYTVARSKSG 83

Query: 84  A---VW-AWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGS 139
                W  WGRN   +LG G  +       P+++   + + +    A    S AI +DG 
Sbjct: 84  KDVYSWGCWGRNQNGELGLGTTKDSHV---PQKILAFEGIRIKMVAAGAEHSVAITEDGD 140

Query: 140 LWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYS 199
           L+ WG  + G LGLG D  + ++P +V  + G+KIV VS GW H ++ +  G L+  G+S
Sbjct: 141 LYGWGWGRYGNLGLG-DTNDRLIPEKVN-IDGDKIVMVSCGWRHTISISSSGGLYTHGWS 198

Query: 200 ADGRIGN 206
             G++G+
Sbjct: 199 KYGQLGH 205



 Score = 58.5 bits (140), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 57/232 (24%), Positives = 100/232 (43%), Gaps = 53/232 (22%)

Query: 143 WGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGK-LFGWGYSAD 201
           WG+ + GQLG G D  + ++P+++ A  G+ IV V+ G  + +A+++ GK ++ WG    
Sbjct: 36  WGRGEDGQLGHG-DTDDRLLPTKLSAFDGQDIVSVTCGADYTVARSKSGKDVYSWGCWGR 94

Query: 202 GRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLV 261
            + G LG                                    G  K+ ++P     F  
Sbjct: 95  NQNGELGL-----------------------------------GTTKDSHVPQKILAF-- 117

Query: 262 EGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINF---HPVSIS 318
           EG+ +  +A G +HS+ +  +G L   G   YG LG    +  + P  +N      V +S
Sbjct: 118 EGIRIKMVAAGAEHSVAITEDGDLYGWGWGRYGNLGLGDTNDRLIPEKVNIDGDKIVMVS 177

Query: 319 SGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPDN--VPLVVEGL 368
            G  H+++I           + G+ + GW++  QLG    ++  VP  V+ L
Sbjct: 178 CGWRHTISISS---------SGGLYTHGWSKYGQLGHGDFEDCLVPRKVQAL 220


>gi|195060098|ref|XP_001995753.1| GH17927 [Drosophila grimshawi]
 gi|193896539|gb|EDV95405.1| GH17927 [Drosophila grimshawi]
          Length = 4933

 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 88/285 (30%), Positives = 128/285 (44%), Gaps = 57/285 (20%)

Query: 19   IFMRSASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVT---SVSAGHYH 75
            +F+ S  G  V + G+G+ G LGL     GV  +   P ++P L   V    +V +G  H
Sbjct: 2957 LFVVSQDGK-VFACGEGTNGRLGL-----GVTHNVPLPHQLPVLHQYVVKKVAVHSGGKH 3010

Query: 76   SLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIG 135
            +LA+T +G V++WG   + +LG G   +R T + P+ VE L    +         S+AI 
Sbjct: 3011 ALALTLDGKVFSWGEGEDGKLGHG---NRTTLDKPRLVEALRAKKIRDIACGSSHSAAIS 3067

Query: 136  DDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGW--GHALAQTEDGKL 193
              G L+ WG  + G+LG G + T+ + P  V AL G ++++V+ G      LA TEDG +
Sbjct: 3068 SQGELYTWGLGEYGRLGHGDNATQ-LKPKLVTALCGSRVIQVACGSRDAQTLALTEDGAV 3126

Query: 194  FGWGYSADGRIGNLGK-ALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYM 252
            F WG   DG  G LG+   E S     I+R S                            
Sbjct: 3127 FSWG---DGDFGKLGRGGSEGSATPHEIERLS---------------------------- 3155

Query: 253  PIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLG 297
                      G+ VV I CG   SL L R G + + G   Y +LG
Sbjct: 3156 ----------GIGVVQIECGAQFSLALTRAGEVWTWGKGDYYRLG 3190



 Score = 80.5 bits (197), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 83/315 (26%), Positives = 139/315 (44%), Gaps = 67/315 (21%)

Query: 68   SVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFAS 127
            +V++G  H LA+T +G V+AWG   + +LG G   +R +++ PK +E L+ ++V      
Sbjct: 4161 AVNSGGKHCLALTTDGEVYAWGEGEDGKLGHG---NRLSYDRPKLLEHLNGMSVADIACG 4217

Query: 128  GVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHA--L 185
               S+AI   G +  WGK + G+LG G D  + + P  VEAL G + + ++ G G A  L
Sbjct: 4218 SAHSAAITASGHVLTWGKGRYGRLGHG-DSEDQLRPKLVEALLGYRAIDIACGSGDAQTL 4276

Query: 186  AQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEG 245
              T+D  ++ WG   DG  G LG+                                 S+G
Sbjct: 4277 CITDDDNVWSWG---DGDYGKLGRG-------------------------------GSDG 4302

Query: 246  MEKEKYMPIIWEPFLVE---GVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQD 302
             +          P+ +E   G+ V+ + CG   S+ L ++G + + G   + +LG    D
Sbjct: 4303 CKL---------PYKIESLAGLGVIKVECGSQFSVALTKSGAVYTWGKGDFHRLGHGSVD 4353

Query: 303  MGMFPVDINF----HPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQL--GRM 356
                P  +        +SI++G  H +A  +         A  + +WG N   QL  G +
Sbjct: 4354 HVRRPKKVAALQGKKIISIATGSLHCVACSD---------AGEVYTWGDNDEGQLGDGTV 4404

Query: 357  GPDNVPLVVEGLEGE 371
                 P +V  L+G+
Sbjct: 4405 TAIQRPRLVAALQGK 4419



 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 57/181 (31%), Positives = 91/181 (50%), Gaps = 16/181 (8%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPS----DVTSVSAGHYHSLAVTNNGA 84
           + ++G G+ G LG      G+  D   PT V  L      DV ++ +G  H+L +TN G 
Sbjct: 713 LYTWGRGNYGRLG-----HGISDDQCLPTMVMALKDHQVVDV-ALGSGDAHTLCLTNEGL 766

Query: 85  VWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWG 144
           V+AWG  +  +LG  +  S      P  +E L +V     FA    S A+  +G L+ WG
Sbjct: 767 VYAWGDGDYGKLGNASCNSSL---QPLLIECLPRVQ--RVFAGSQFSLALTGEGQLYSWG 821

Query: 145 K-SKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGR 203
           K S  G   + +++    VP  + +L  ++IV V+ G  H LA +  G++FGWG + + +
Sbjct: 822 KASCLGHQLVERNVQGCSVPRLITSLQHKRIVDVAVGVTHCLALSSAGEIFGWGRNDNQQ 881

Query: 204 I 204
           I
Sbjct: 882 I 882



 Score = 72.4 bits (176), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 58/182 (31%), Positives = 92/182 (50%), Gaps = 14/182 (7%)

Query: 29   VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLP-SDVTSVSAGHY--HSLAVTNNGAV 85
            + ++G G  G LG      G      +P  V  L  S V  V+ G     +LA+T +GAV
Sbjct: 3072 LYTWGLGEYGRLG-----HGDNATQLKPKLVTALCGSRVIQVACGSRDAQTLALTEDGAV 3126

Query: 86   WAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNV-CAAFASGVVSSAIGDDGSLWVWG 144
            ++WG  +  +LGRG  E  AT ++ +R+ G+  V + C A  S  ++ A    G +W WG
Sbjct: 3127 FSWGDGDFGKLGRGGSEGSATPHEIERLSGIGVVQIECGAQFSLALTRA----GEVWTWG 3182

Query: 145  KSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRI 204
            K    +LG G D      P  +  L G +++ V+ G  H LA T+ G+++ WG +  G+ 
Sbjct: 3183 KGDYYRLGHGGD-QHVRKPQPIAGLRGRRVIHVAVGALHCLAVTDAGQVYAWGDNDHGQQ 3241

Query: 205  GN 206
            G+
Sbjct: 3242 GS 3243



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 54/188 (28%), Positives = 94/188 (50%), Gaps = 15/188 (7%)

Query: 23   SASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGL----PSDVTSVSAGHYHSLA 78
            +ASG  V+++G G  G LG      G   D   P  V  L      D+ +  +G   +L 
Sbjct: 4225 TASGH-VLTWGKGRYGRLG-----HGDSEDQLRPKLVEALLGYRAIDI-ACGSGDAQTLC 4277

Query: 79   VTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDG 138
            +T++  VW+WG  +  +LGRG  +       P ++E L  + V         S A+   G
Sbjct: 4278 ITDDDNVWSWGDGDYGKLGRGGSDG---CKLPYKIESLAGLGVIKVECGSQFSVALTKSG 4334

Query: 139  SLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGY 198
            +++ WGK    +LG G  +     P +V AL G+KI+ ++ G  H +A ++ G+++ WG 
Sbjct: 4335 AVYTWGKGDFHRLGHGS-VDHVRRPKKVAALQGKKIISIATGSLHCVACSDAGEVYTWGD 4393

Query: 199  SADGRIGN 206
            + +G++G+
Sbjct: 4394 NDEGQLGD 4401



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 68/238 (28%), Positives = 106/238 (44%), Gaps = 23/238 (9%)

Query: 75  HSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAI 134
           H LAV NN   ++WG  +  +LG G   SR     P ++E L +  V + +     S+AI
Sbjct: 652 HFLAVDNNFNAYSWGTGDNRRLGHGDCHSREL---PTKIESLVR-RVKSVYCGCSYSAAI 707

Query: 135 GDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWG--HALAQTEDGK 192
              G+L+ WG+   G+LG G    +  +P+ V AL   ++V V+ G G  H L  T +G 
Sbjct: 708 TLRGNLYTWGRGNYGRLGHGIS-DDQCLPTMVMALKDHQVVDVALGSGDAHTLCLTNEGL 766

Query: 193 LFGWGYSADGRIGNLGKALESSPL----DSNIDRSSESDQEISSSTIE-------KAQKL 241
           ++ WG    G++GN        PL       + R     Q   + T E       KA  L
Sbjct: 767 VYAWGDGDYGKLGNASCNSSLQPLLIECLPRVQRVFAGSQFSLALTGEGQLYSWGKASCL 826

Query: 242 VSEGMEKEKYMPIIWEPFLVEGVE---VVDIACGFDHSLVLGRNGVLLSCGSNVYGQL 296
             + +E+      +  P L+  ++   +VD+A G  H L L   G +   G N   Q+
Sbjct: 827 GHQLVERNVQGCSV--PRLITSLQHKRIVDVAVGVTHCLALSSAGEIFGWGRNDNQQI 882



 Score = 68.6 bits (166), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 52/157 (33%), Positives = 75/157 (47%), Gaps = 10/157 (6%)

Query: 31   SFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPS-DVTSVSAGHYHSLAVTNNGAVWAWG 89
            S+GDG  G LG      G       P ++  L    V  V  G   S+A+T +GAV+ WG
Sbjct: 4286 SWGDGDYGKLG-----RGGSDGCKLPYKIESLAGLGVIKVECGSQFSVALTKSGAVYTWG 4340

Query: 90   RNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRG 149
            + +  +LG G+++       PK+V  L    + +     +   A  D G ++ WG +  G
Sbjct: 4341 KGDFHRLGHGSVDH---VRRPKKVAALQGKKIISIATGSLHCVACSDAGEVYTWGDNDEG 4397

Query: 150  QLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALA 186
            QLG G  +T    P  V AL G+ IVKV+ G  H LA
Sbjct: 4398 QLGDGT-VTAIQRPRLVAALQGKHIVKVTCGSAHTLA 4433



 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 79/309 (25%), Positives = 124/309 (40%), Gaps = 55/309 (17%)

Query: 69   VSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQ--VNVCAAFA 126
            ++ G      V+ +G V+A G     +LG G   +      P ++  L Q  V   A  +
Sbjct: 2950 IAGGSKSLFVVSQDGKVFACGEGTNGRLGLGVTHNVPL---PHQLPVLHQYVVKKVAVHS 3006

Query: 127  SGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALA 186
             G  + A+  DG ++ WG+ + G+LG G   T    P  VEAL  +KI  ++ G  H+ A
Sbjct: 3007 GGKHALALTLDGKVFSWGEGEDGKLGHGNRTT-LDKPRLVEALRAKKIRDIACGSSHSAA 3065

Query: 187  QTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGM 246
             +  G+L+ WG    GR+G+   A +  P                        KLV+   
Sbjct: 3066 ISSQGELYTWGLGEYGRLGHGDNATQLKP------------------------KLVTA-- 3099

Query: 247  EKEKYMPIIWEPFLVEGVEVVDIACGFD--HSLVLGRNGVLLSCGSNVYGQLGREKQDMG 304
                          + G  V+ +ACG     +L L  +G + S G   +G+LGR   +  
Sbjct: 3100 --------------LCGSRVIQVACGSRDAQTLALTEDGAVFSWGDGDFGKLGRGGSEGS 3145

Query: 305  MFPVDINFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPDNV--P 362
              P     H +   SG+G     C  + S     A  + +WG     +LG  G  +V  P
Sbjct: 3146 ATP-----HEIERLSGIGVVQIECGAQFSLALTRAGEVWTWGKGDYYRLGHGGDQHVRKP 3200

Query: 363  LVVEGLEGE 371
              + GL G 
Sbjct: 3201 QPIAGLRGR 3209



 Score = 55.1 bits (131), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 79/309 (25%), Positives = 123/309 (39%), Gaps = 55/309 (17%)

Query: 69   VSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNV--CAAFA 126
            ++ G     AVT +G ++A G  +  +LG G  +S   W+ P  +  L  V V   A  +
Sbjct: 4108 LAGGEQSLFAVTPDGKLFATGYGSGGRLGVGGSDS---WSIPTLLGSLQHVFVKKVAVNS 4164

Query: 127  SGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALA 186
             G    A+  DG ++ WG+ + G+LG G  ++    P  +E L G  +  ++ G  H+ A
Sbjct: 4165 GGKHCLALTTDGEVYAWGEGEDGKLGHGNRLSYD-RPKLLEHLNGMSVADIACGSAHSAA 4223

Query: 187  QTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGM 246
             T  G +  WG    GR G LG                                    G 
Sbjct: 4224 ITASGHVLTWG---KGRYGRLG-----------------------------------HGD 4245

Query: 247  EKEKYMPIIWEPFLVEGVEVVDIACGF--DHSLVLGRNGVLLSCGSNVYGQLGREKQDMG 304
             +++  P + E  L  G   +DIACG     +L +  +  + S G   YG+LGR   D  
Sbjct: 4246 SEDQLRPKLVEALL--GYRAIDIACGSGDAQTLCITDDDNVWSWGDGDYGKLGRGGSDGC 4303

Query: 305  MFPVDINFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPDNV--P 362
              P  I        +GLG     C  + S     +  + +WG     +LG    D+V  P
Sbjct: 4304 KLPYKIES-----LAGLGVIKVECGSQFSVALTKSGAVYTWGKGDFHRLGHGSVDHVRRP 4358

Query: 363  LVVEGLEGE 371
              V  L+G+
Sbjct: 4359 KKVAALQGK 4367



 Score = 55.1 bits (131), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 76/294 (25%), Positives = 117/294 (39%), Gaps = 59/294 (20%)

Query: 85   VWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWG 144
            ++ WG N+  QLG G   SR     P   E L  +             A+  DG L+  G
Sbjct: 4072 IYGWGHNHRGQLG-GLEGSRI--KTPTPCEALSLLRPVQLAGGEQSLFAVTPDGKLFATG 4128

Query: 145  KSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWG--HALAQTEDGKLFGWGYSADG 202
                G+LG+G   + +I P+ + +L    + KV+   G  H LA T DG+++ WG   DG
Sbjct: 4129 YGSGGRLGVGGSDSWSI-PTLLGSLQHVFVKKVAVNSGGKHCLALTTDGEVYAWGEGEDG 4187

Query: 203  RIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVE 262
            ++G+  +     P                        KL+                  + 
Sbjct: 4188 KLGHGNRLSYDRP------------------------KLLEH----------------LN 4207

Query: 263  GVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDIN----FHPVSIS 318
            G+ V DIACG  HS  +  +G +L+ G   YG+LG    +  + P  +     +  + I+
Sbjct: 4208 GMSVADIACGSAHSAAITASGHVLTWGKGRYGRLGHGDSEDQLRPKLVEALLGYRAIDIA 4267

Query: 319  SGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPD--NVPLVVEGLEG 370
             G G +  +C     NV        SWG     +LGR G D   +P  +E L G
Sbjct: 4268 CGSGDAQTLCITDDDNVW-------SWGDGDYGKLGRGGSDGCKLPYKIESLAG 4314



 Score = 40.0 bits (92), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 24/64 (37%), Positives = 36/64 (56%), Gaps = 1/64 (1%)

Query: 135  GDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLF 194
            G   +++ WG + RGQLG G + +    P+  EAL+  + V+++ G     A T DGKLF
Sbjct: 4067 GGASTIYGWGHNHRGQLG-GLEGSRIKTPTPCEALSLLRPVQLAGGEQSLFAVTPDGKLF 4125

Query: 195  GWGY 198
              GY
Sbjct: 4126 ATGY 4129


>gi|63995563|gb|AAY41038.1| unknown [Homo sapiens]
          Length = 382

 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 72/260 (27%), Positives = 121/260 (46%), Gaps = 22/260 (8%)

Query: 55  EPTRVPGLPSD-VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRV 113
           +P ++  L    +  V+ G  HSLA+++ G +++WG  ++ QLG    E       P+ +
Sbjct: 74  KPEQIGALADQHIIHVACGESHSLALSDRGQLFSWGAGSDGQLGLMTTEDSVAV--PRLI 131

Query: 114 EGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEK 173
           + L+Q  +           A+  DG  + WGK+  GQLGLGK+      P RV +L G  
Sbjct: 132 QKLNQQTILQVSCGNWHCLALAADGQFFTWGKNSHGQLGLGKEFPSQASPQRVRSLEGIP 191

Query: 174 IVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSE----SDQE 229
           + +V+ G  H+ A +  G +FGWG +  G++G   +    SP    + R+ +    S  E
Sbjct: 192 LAQVAAGGAHSFALSLSGAVFGWGMNNAGQLGLSDEKDRESPCHVKLLRTQKVVYISCGE 251

Query: 230 ISSSTIEKAQKLVSEG-----------MEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLV 278
             ++ + K+  + + G           M  E     + E   + G EV  IACG  H+L 
Sbjct: 252 EHTAVLTKSGGVFTFGAGSCGQLGHDSMNDEVNPRRVLE---LMGSEVTQIACGRQHTLA 308

Query: 279 L-GRNGVLLSCGSNVYGQLG 297
               +G++ + G    GQLG
Sbjct: 309 FVPSSGLIYAFGCGARGQLG 328



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 40/130 (30%), Positives = 65/130 (50%), Gaps = 23/130 (17%)

Query: 254 IIWEPF---LVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDI 310
           I+ EP     +    V ++ACG +HS+ L  +G + +CG N  GQLG E++  G  P  I
Sbjct: 21  IVAEPQVCGFISDRSVKEVACGGNHSVFLLEDGEVYTCGLNTKGQLGHERE--GNKPEQI 78

Query: 311 ----NFHPVSISSGLGHSLAICEVRSSNVTGGARG-IVSWGWNRSSQLGRMGPDN---VP 362
               + H + ++ G  HSLA+ +          RG + SWG     QLG M  ++   VP
Sbjct: 79  GALADQHIIHVACGESHSLALSD----------RGQLFSWGAGSDGQLGLMTTEDSVAVP 128

Query: 363 LVVEGLEGES 372
            +++ L  ++
Sbjct: 129 RLIQKLNQQT 138


>gi|410906431|ref|XP_003966695.1| PREDICTED: X-linked retinitis pigmentosa GTPase regulator-like
           [Takifugu rubripes]
          Length = 726

 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 87/304 (28%), Positives = 141/304 (46%), Gaps = 38/304 (12%)

Query: 11  HVNVLTS--RIFMRSASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSD-VT 67
           H  ++T   R+FM          FG  + G LGL +  T       +PT V  L ++ V 
Sbjct: 47  HTALITKNGRLFM----------FGSNNWGQLGLGSKRT-----VNKPTCVKALKTEKVL 91

Query: 68  SVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFAS 127
            V+ G  H+L  T  G V++ G N+E QLG G  E R T+   +R+   D +      A+
Sbjct: 92  LVACGRNHTLICTAQGKVFSSGGNSEGQLGLGDCEERTTF---QRIHAFDSLGPVKMLAA 148

Query: 128 GV-VSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALA 186
           G   S+A+ + G L++WG +  GQ+GL K   E+  PS  E   G  I  VS G+ H+  
Sbjct: 149 GSNTSAALTESGKLFMWGDNTEGQIGLAK---ESHAPSPQEVDVGGPISWVSCGYYHSAF 205

Query: 187 QTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISS----STIEKAQKLV 242
            T DG L+ +G    G++G   + L    +   +    E   +++     +     ++L 
Sbjct: 206 VTADGALYTFGECDSGKLGLTTEQLPRHRVPQMVKSIKEPVTQVACGGGHTVALTEERLF 265

Query: 243 SEGMEKEKYM---PIIWEPFLVEGVE------VVDIACGFDHSLVLGRNGVLLSCGSNVY 293
           + G+ +   +     I+E  L   VE      V  +ACG +H+ V+   G+L + G   +
Sbjct: 266 TFGLGQFGQLGHGTFIFESRLPRPVEHFKKGRVCQVACGENHTAVITDGGLLYTFGDGRH 325

Query: 294 GQLG 297
           G+LG
Sbjct: 326 GKLG 329



 Score = 51.6 bits (122), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 48/169 (28%), Positives = 73/169 (43%), Gaps = 13/169 (7%)

Query: 28  AVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWA 87
           A+ +FG+   G LGL T           P  V  +   VT V+ G  H++A+T    ++ 
Sbjct: 211 ALYTFGECDSGKLGLTTEQLP---RHRVPQMVKSIKEPVTQVACGGGHTVALTEE-RLFT 266

Query: 88  WGRNNEVQLGRGAL--ESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGK 145
           +G     QLG G    ESR     P+ VE   +  VC        ++ I D G L+ +G 
Sbjct: 267 FGLGQFGQLGHGTFIFESRL----PRPVEHFKKGRVCQVACGENHTAVITDGGLLYTFGD 322

Query: 146 SKRGQLGLGKD-ITEAIVPSRVEALAGEKIVKVSFGWGH--ALAQTEDG 191
            + G+LGLG++  T    P+         +   + G  H   LA+  DG
Sbjct: 323 GRHGKLGLGEENFTNQFKPTVCSRFLKYGVQAATCGGCHMVVLARPRDG 371


>gi|302760205|ref|XP_002963525.1| hypothetical protein SELMODRAFT_438355 [Selaginella moellendorffii]
 gi|300168793|gb|EFJ35396.1| hypothetical protein SELMODRAFT_438355 [Selaginella moellendorffii]
          Length = 430

 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 88/339 (25%), Positives = 145/339 (42%), Gaps = 64/339 (18%)

Query: 23  SASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPS-DVTSVSAGHYHSLAVTN 81
           SA+   + S+G G  G LG      G   D + P  +  L   ++  ++ G  H LAVT 
Sbjct: 73  SATRLTIYSWGWGDFGRLG-----HGNSSDLFVPHPIKALQGLEIRQIACGDSHCLAVTA 127

Query: 82  NGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLW 141
           +G V++WGRN   QLG G  +       P ++   + V+V    A    ++A+ D G L+
Sbjct: 128 DGEVYSWGRNQNGQLGLGDTDDSLV---PHKLLAFEGVSVKMLAAGAEHTAAVTDGGKLY 184

Query: 142 VWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSAD 201
            WG  + G LGLG D  + ++P+ V A+  EK+  V+ GW H +A ++ GKL+ +G+S  
Sbjct: 185 GWGWGRYGNLGLG-DRGDRMLPAEVPAVGDEKMCMVACGWRHTIAVSQSGKLYTYGWSKY 243

Query: 202 GRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLV 261
           G++G+                   +D  +       A+                      
Sbjct: 244 GQLGH----------------GDYADHLLPHQVAALAE---------------------- 265

Query: 262 EGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINF-----HPVS 316
               +  ++ G+ H++ L   G L   G N +GQ+G    D    P  I+        V 
Sbjct: 266 --FNITQVSGGWRHTVALTEAGKLYGWGWNKFGQVGSGDVDDHTSPQLISIPGQHQRVVQ 323

Query: 317 ISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGR 355
           +S G  H++A+ +  +         + SWG   S QLG 
Sbjct: 324 VSCGWRHTVAVTDKNN---------VYSWGRGTSGQLGH 353



 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 80/312 (25%), Positives = 146/312 (46%), Gaps = 42/312 (13%)

Query: 66  VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNV---- 121
           V  VSAG  H++A+ +   V ++GR  + QLG G  E R   + P+ +  L+   +    
Sbjct: 7   VLLVSAGASHTVALLSGQVVCSFGRGEDGQLGHGDAEDR---HLPRIIGALNDCEISLVA 63

Query: 122 CAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGW 181
           C A  +   S+      +++ WG    G+LG G   ++  VP  ++AL G +I +++ G 
Sbjct: 64  CGADHTTAYSAT---RLTIYSWGWGDFGRLGHGNS-SDLFVPHPIKALQGLEIRQIACGD 119

Query: 182 GHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEIS-----SSTIE 236
            H LA T DG+++ WG + +G++G LG   +S      +     S + ++     ++ + 
Sbjct: 120 SHCLAVTADGEVYSWGRNQNGQLG-LGDTDDSLVPHKLLAFEGVSVKMLAAGAEHTAAVT 178

Query: 237 KAQKLVSEGMEK----------EKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLL 286
              KL   G  +          ++ +P   E   V   ++  +ACG+ H++ + ++G L 
Sbjct: 179 DGGKLYGWGWGRYGNLGLGDRGDRMLPA--EVPAVGDEKMCMVACGWRHTIAVSQSGKLY 236

Query: 287 SCGSNVYGQLGREKQDMGMFPVDI----NFHPVSISSGLGHSLAICEVRSSNVTGGARGI 342
           + G + YGQLG       + P  +     F+   +S G  H++A+ E         A  +
Sbjct: 237 TYGWSKYGQLGHGDYADHLLPHQVAALAEFNITQVSGGWRHTVALTE---------AGKL 287

Query: 343 VSWGWNRSSQLG 354
             WGWN+  Q+G
Sbjct: 288 YGWGWNKFGQVG 299



 Score = 68.9 bits (167), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 55/193 (28%), Positives = 95/193 (49%), Gaps = 13/193 (6%)

Query: 26  GTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSD-VTSVSAGHYHSLAVTNNGA 84
           G  +  +G G  G LGL     G  GD   P  VP +  + +  V+ G  H++AV+ +G 
Sbjct: 180 GGKLYGWGWGRYGNLGL-----GDRGDRMLPAEVPAVGDEKMCMVACGWRHTIAVSQSGK 234

Query: 85  VWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWG 144
           ++ +G +   QLG G          P +V  L + N+         + A+ + G L+ WG
Sbjct: 235 LYTYGWSKYGQLGHGDYADHLL---PHQVAALAEFNITQVSGGWRHTVALTEAGKLYGWG 291

Query: 145 KSKRGQLGLGKDITEAIVPSRVEALAGE--KIVKVSFGWGHALAQTEDGKLFGWGYSADG 202
            +K GQ+G G D+ +   P  + ++ G+  ++V+VS GW H +A T+   ++ WG    G
Sbjct: 292 WNKFGQVGSG-DVDDHTSPQLI-SIPGQHQRVVQVSCGWRHTVAVTDKNNVYSWGRGTSG 349

Query: 203 RIGNLGKALESSP 215
           ++G+      S+P
Sbjct: 350 QLGHGDAVDRSAP 362



 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 61/231 (26%), Positives = 92/231 (39%), Gaps = 57/231 (24%)

Query: 143 WGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDG-KLFGWGYSAD 201
           +G+ + GQLG G D  +  +P  + AL   +I  V+ G  H  A +     ++ WG+   
Sbjct: 29  FGRGEDGQLGHG-DAEDRHLPRIIGALNDCEISLVACGADHTTAYSATRLTIYSWGWGDF 87

Query: 202 GRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPF-L 260
           GR+G+                                      G   + ++P    P   
Sbjct: 88  GRLGH--------------------------------------GNSSDLFVP---HPIKA 106

Query: 261 VEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVD-INFHPVSISS 319
           ++G+E+  IACG  H L +  +G + S G N  GQLG    D  + P   + F  VS+  
Sbjct: 107 LQGLEIRQIACGDSHCLAVTADGEVYSWGRNQNGQLGLGDTDDSLVPHKLLAFEGVSVK- 165

Query: 320 GLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLG------RMGPDNVPLV 364
                LA     ++ VT G + +  WGW R   LG      RM P  VP V
Sbjct: 166 ----MLAAGAEHTAAVTDGGK-LYGWGWGRYGNLGLGDRGDRMLPAEVPAV 211



 Score = 41.6 bits (96), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 29/80 (36%), Positives = 38/80 (47%), Gaps = 7/80 (8%)

Query: 59  VPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESR-------ATWNDPK 111
           +PG    V  VS G  H++AVT+   V++WGR    QLG G    R       A   D K
Sbjct: 314 IPGQHQRVVQVSCGWRHTVAVTDKNNVYSWGRGTSGQLGHGDAVDRSAPKGIQALSADGK 373

Query: 112 RVEGLDQVNVCAAFASGVVS 131
             EGL++    A   SGV +
Sbjct: 374 ACEGLEKSPEPAVTGSGVAN 393


>gi|24659266|gb|AAH38960.1| HERC3 protein [Homo sapiens]
          Length = 368

 Score = 95.5 bits (236), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 72/260 (27%), Positives = 121/260 (46%), Gaps = 22/260 (8%)

Query: 55  EPTRVPGLPSD-VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRV 113
           +P ++  L    +  V+ G  HSLA+++ G +++WG  ++ QLG    E       P+ +
Sbjct: 74  KPEQIGALADQHIIHVACGESHSLALSDRGQLFSWGAGSDGQLGLMTTEDSVA--VPRLI 131

Query: 114 EGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEK 173
           + L+Q  +           A+  DG  + WGK+  GQLGLGK+      P RV +L G  
Sbjct: 132 QKLNQQTILQVSCGNWHCLALAADGQFFTWGKNSHGQLGLGKEFPSQASPQRVRSLEGIP 191

Query: 174 IVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSE----SDQE 229
           + +V+ G  H+ A +  G +FGWG +  G++G   +    SP    + R+ +    S  E
Sbjct: 192 LAQVAAGGAHSFALSLSGAVFGWGMNNAGQLGLSDEKDRESPCHVKLLRTQKVVYISCGE 251

Query: 230 ISSSTIEKAQKLVSEG-----------MEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLV 278
             ++ + K+  + + G           M  E     + E   + G EV  IACG  H+L 
Sbjct: 252 EHTAVLTKSGGVFTFGAGSCGQLGHDSMNDEVNPRRVLE---LMGSEVTQIACGRQHTLA 308

Query: 279 L-GRNGVLLSCGSNVYGQLG 297
               +G++ + G    GQLG
Sbjct: 309 FVPSSGLIYAFGCGARGQLG 328



 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 40/130 (30%), Positives = 65/130 (50%), Gaps = 23/130 (17%)

Query: 254 IIWEPF---LVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDI 310
           I+ EP     +    V ++ACG +HS+ L  +G + +CG N  GQLG E++  G  P  I
Sbjct: 21  IVAEPQVCGFISDRSVKEVACGGNHSVFLLEDGEVYTCGLNTKGQLGHERE--GNKPEQI 78

Query: 311 ----NFHPVSISSGLGHSLAICEVRSSNVTGGARG-IVSWGWNRSSQLGRMGPDN---VP 362
               + H + ++ G  HSLA+ +          RG + SWG     QLG M  ++   VP
Sbjct: 79  GALADQHIIHVACGESHSLALSD----------RGQLFSWGAGSDGQLGLMTTEDSVAVP 128

Query: 363 LVVEGLEGES 372
            +++ L  ++
Sbjct: 129 RLIQKLNQQT 138


>gi|403366107|gb|EJY82845.1| RCC1 repeat domain protein [Oxytricha trifallax]
          Length = 2141

 Score = 95.5 bits (236), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 86/332 (25%), Positives = 136/332 (40%), Gaps = 66/332 (19%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAW 88
           V S+G G+ G LG       +  +  +  +   L  ++  ++ G  H L++ + G V++W
Sbjct: 273 VYSWGLGNSGGLGQGEQNVSMTPNIIKYQKNGHLFQNIKDIACGSNHVLSLDHQGIVYSW 332

Query: 89  GRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKR 148
           G     +LG G        N PK + GL Q  +    A    S+AI     L++WG    
Sbjct: 333 GNGQGGRLGHG---DETGENIPKEIIGLRQYKILMIEAGEGSSAAISIKNELFIWGVGLH 389

Query: 149 GQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLG 208
           G+LG GK     + P  +E L  +K+  ++ G  H+L    +GK   WG S DG++G   
Sbjct: 390 GRLGTGK-TANVLKPVMLEDLKDQKVEDIALGSNHSLCILRNGKAMCWGSSKDGKLG--- 445

Query: 209 KALESSPLDSNIDRSSE-----------------------SDQEISSSTIEKAQKLVSEG 245
             LE++ LD N  +  E                        + EI S    K  KL  + 
Sbjct: 446 --LETA-LDRNFTQPKELVTLDKEKLYQIAAGPFHSIALTENGEIYSFGNSKDGKLGYDE 502

Query: 246 ME------------------------KEKY---------MPIIWEPFLVEGVEVVDIACG 272
           ++                        ++KY         M +I     + G EV+   CG
Sbjct: 503 IKGNVQIPRKITNCPIFARKTGLNDRRDKYQLFNQFDDQMTVISNNQQLGGCEVIQAQCG 562

Query: 273 FDHSLVLGRNGVLLSCGSNVYGQLGREKQDMG 304
           F+ ++ L  +G +  CGSN YGQLG  K+  G
Sbjct: 563 FNSTVFLLNDGQMYVCGSNKYGQLGFSKRAGG 594



 Score = 71.6 bits (174), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 67/288 (23%), Positives = 112/288 (38%), Gaps = 92/288 (31%)

Query: 66  VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRG-------------------------- 99
           +  VS G+  +LA++  G V++WG  N   LG+G                          
Sbjct: 254 IIKVSCGNSFTLALSQEGHVYSWGLGNSGGLGQGEQNVSMTPNIIKYQKNGHLFQNIKDI 313

Query: 100 --------ALESRA---TWND----------------PKRVEGLDQVNVCAAFASGVVSS 132
                   +L+ +    +W +                PK + GL Q  +    A    S+
Sbjct: 314 ACGSNHVLSLDHQGIVYSWGNGQGGRLGHGDETGENIPKEIIGLRQYKILMIEAGEGSSA 373

Query: 133 AIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGK 192
           AI     L++WG    G+LG GK     + P  +E L  +K+  ++ G  H+L    +GK
Sbjct: 374 AISIKNELFIWGVGLHGRLGTGK-TANVLKPVMLEDLKDQKVEDIALGSNHSLCILRNGK 432

Query: 193 LFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYM 252
              WG S DG++G          L++ +DR+    +E+ +             ++KEK  
Sbjct: 433 AMCWGSSKDGKLG----------LETALDRNFTQPKELVT-------------LDKEKLY 469

Query: 253 PIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREK 300
            I   PF               HS+ L  NG + S G++  G+LG ++
Sbjct: 470 QIAAGPF---------------HSIALTENGEIYSFGNSKDGKLGYDE 502



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 74/295 (25%), Positives = 119/295 (40%), Gaps = 63/295 (21%)

Query: 82  NGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVN--------VCAAFASGVV--- 130
           NG V+ WG  NE +LG    E        K +E ++Q N            F + ++   
Sbjct: 205 NGIVFTWGVVNEGRLGIALNE--------KEIENIEQKNNELIPFKPSIVKFDASIIIIK 256

Query: 131 -------SSAIGDDGSLWVWGKSKRGQLGLGK---DITEAIVPSRVEALAGEKIVKVSFG 180
                  + A+  +G ++ WG    G LG G+    +T  I+  +      + I  ++ G
Sbjct: 257 VSCGNSFTLALSQEGHVYSWGLGNSGGLGQGEQNVSMTPNIIKYQKNGHLFQNIKDIACG 316

Query: 181 WGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSE----SDQEISSSTIE 236
             H L+    G ++ WG    GR+G+  +  E+ P +    R  +       E SS+ I 
Sbjct: 317 SNHVLSLDHQGIVYSWGNGQGGRLGHGDETGENIPKEIIGLRQYKILMIEAGEGSSAAIS 376

Query: 237 KAQKL----------VSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLL 286
              +L          +  G       P++ E    + VE  DIA G +HSL + RNG  +
Sbjct: 377 IKNELFIWGVGLHGRLGTGKTANVLKPVMLEDLKDQKVE--DIALGSNHSLCILRNGKAM 434

Query: 287 SCGSNVYGQLGREKQDMGMFPVDINF-HP-----------VSISSGLGHSLAICE 329
             GS+  G+LG E        +D NF  P             I++G  HS+A+ E
Sbjct: 435 CWGSSKDGKLGLET------ALDRNFTQPKELVTLDKEKLYQIAAGPFHSIALTE 483



 Score = 58.2 bits (139), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 77/319 (24%), Positives = 135/319 (42%), Gaps = 69/319 (21%)

Query: 66  VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAF 125
           +  VS G++H LAVT+ GA + WGRN+  QLG G  ++  +   P R++ L Q  V    
Sbjct: 677 IKHVSTGYFHVLAVTHEGATFGWGRNDNGQLGMGRKDTVVS--KPTRIKSL-QDKVIIMT 733

Query: 126 ASGVVSSA-IGDDGSLWVWGKSKRGQLGLGKDITEA-------------------IVPSR 165
           ASG   S  + D G +   G ++ G+LG+G + T                     ++ ++
Sbjct: 734 ASGESHSLFLSDLGEVLCSGFNEFGELGIGLNSTSGGADKKENPDEIYDENYQRQLIETK 793

Query: 166 VEALAGEKIVK-------VSFGWGHALA------QTEDGKLFGWGYSADGRIGN------ 206
           +E     KI+K       ++ G  H++A      + +  KLF WG    G+ G+      
Sbjct: 794 IELTP--KIIKGLESIGFIAAGKNHSIAIRTYKRKEKAMKLFTWGCGWHGQTGHGSWQND 851

Query: 207 -LGKALESSPLDSN--IDRSSESDQEISSSTI-------EKAQKLVSEGMEKEKYMPI-- 254
            L + ++   L     I  S  S   I+  T         K    + +  +++++MP   
Sbjct: 852 YLPQIVKVPVLKDTKFIQASCGSKHTIALDTTGHIWFFGYKPSVGIEDFNDEKQFMPARL 911

Query: 255 -----IWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMF-PV 308
                I EPF         I+ G +H+L + ++G++   G N   ++    ++   F  V
Sbjct: 912 ETPSKIQEPFKF-------ISSGEEHNLAVTQSGLVYGFGKNTNTKINSSHKEYLYFDQV 964

Query: 309 DINFHPVSISSGLGHSLAI 327
           +     V  + G  HS+ I
Sbjct: 965 ENEEKAVLTACGANHSVLI 983



 Score = 49.7 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 66/337 (19%), Positives = 125/337 (37%), Gaps = 73/337 (21%)

Query: 32  FGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSD-VTSVSAGHYHSLAVTNNGAVWAWGR 90
           +G G  G LG     TG   +  +P  +  L    V  ++ G  HSL +  NG    WG 
Sbjct: 384 WGVGLHGRLG-----TGKTANVLKPVMLEDLKDQKVEDIALGSNHSLCILRNGKAMCWGS 438

Query: 91  NNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQ 150
           + + +LG      R  +  PK +  LD+  +    A    S A+ ++G ++ +G SK G+
Sbjct: 439 SKDGKLGLETALDR-NFTQPKELVTLDKEKLYQIAAGPFHSIALTENGEIYSFGNSKDGK 497

Query: 151 LGLGKDITEAIVPSRV-----------------------------------EALAGEKIV 175
           LG  +      +P ++                                   + L G +++
Sbjct: 498 LGYDEIKGNVQIPRKITNCPIFARKTGLNDRRDKYQLFNQFDDQMTVISNNQQLGGCEVI 557

Query: 176 KVSFGWGHALAQTEDGKLF----------GWGYSADGRIGNLGKALESSPLDSNIDRSS- 224
           +   G+   +    DG+++          G+   A G+  +  K L +S  D N    S 
Sbjct: 558 QAQCGFNSTVFLLNDGQMYVCGSNKYGQLGFSKRAGGKDKDGNKMLINSNNDGNQGGMSG 617

Query: 225 -------------------ESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVE 265
                              ++  ++    ++K    + +  + EK  P+      V+ ++
Sbjct: 618 ANDNDNDDDDNGIGGGFLQQNSDDVLPPQLKKKLAELQQLQDVEKPSPLTIYHDAVQ-MK 676

Query: 266 VVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQD 302
           +  ++ G+ H L +   G     G N  GQLG  ++D
Sbjct: 677 IKHVSTGYFHVLAVTHEGATFGWGRNDNGQLGMGRKD 713



 Score = 40.0 bits (92), Expect = 1.8,   Method: Composition-based stats.
 Identities = 77/321 (23%), Positives = 116/321 (36%), Gaps = 53/321 (16%)

Query: 28   AVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSA-GHYHSLAVTNNGAVW 86
            A   +G    G LG+    T V     +PTR+  L   V  ++A G  HSL +++ G V 
Sbjct: 695  ATFGWGRNDNGQLGMGRKDTVVS----KPTRIKSLQDKVIIMTASGESHSLFLSDLGEVL 750

Query: 87   AWGRNNEVQLGRGALESRATWND-------------------------PKRVEGLDQVNV 121
              G N   +LG G L S +   D                         PK ++GL+ +  
Sbjct: 751  CSGFNEFGELGIG-LNSTSGGADKKENPDEIYDENYQRQLIETKIELTPKIIKGLESIGF 809

Query: 122  CAAFASGVVSSAIGDDGS----LWVWGKSKRGQLGLG---KDITEAIVPSRVEALAGEKI 174
             AA  +  ++            L+ WG    GQ G G    D    IV  +V  L   K 
Sbjct: 810  IAAGKNHSIAIRTYKRKEKAMKLFTWGCGWHGQTGHGSWQNDYLPQIV--KVPVLKDTKF 867

Query: 175  VKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSST 234
            ++ S G  H +A    G ++ +GY     I +     +  P         +   +  SS 
Sbjct: 868  IQASCGSKHTIALDTTGHIWFFGYKPSVGIEDFNDEKQFMPARLETPSKIQEPFKFISSG 927

Query: 235  IEKAQKLVSEGM-------EKEKYMPIIWEPFLVEGVE----VVDIACGFDHSLVLGRNG 283
             E    +   G+          K      E    + VE     V  ACG +HS+++   G
Sbjct: 928  EEHNLAVTQSGLVYGFGKNTNTKINSSHKEYLYFDQVENEEKAVLTACGANHSVLIDTKG 987

Query: 284  VLLSCGSNVYGQLG--REKQD 302
            V  + G    G+ G   EK D
Sbjct: 988  VPYTWGFVGNGRCGLKLEKDD 1008



 Score = 38.1 bits (87), Expect = 6.0,   Method: Composition-based stats.
 Identities = 49/196 (25%), Positives = 84/196 (42%), Gaps = 60/196 (30%)

Query: 190 DGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKE 249
           +G +F WG   +GR   LG AL              +++EI             E +E++
Sbjct: 205 NGIVFTWGVVNEGR---LGIAL--------------NEKEI-------------ENIEQK 234

Query: 250 KYMPIIWEPFLVE---GVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMF 306
               I ++P +V+    + ++ ++CG   +L L + G + S G    G LG+ +Q++ M 
Sbjct: 235 NNELIPFKPSIVKFDASIIIIKVSCGNSFTLALSQEGHVYSWGLGNSGGLGQGEQNVSMT 294

Query: 307 PVDINFHP--------VSISSGLGHSLAICEVRSSNVTGGARGIV-SWGWNRSSQLGRMG 357
           P  I +            I+ G  H L++            +GIV SWG   + Q GR+G
Sbjct: 295 PNIIKYQKNGHLFQNIKDIACGSNHVLSL----------DHQGIVYSWG---NGQGGRLG 341

Query: 358 -----PDNVPLVVEGL 368
                 +N+P  + GL
Sbjct: 342 HGDETGENIPKEIIGL 357


>gi|296134345|ref|YP_003641592.1| Ig domain-containing protein group 2 domain-containing protein
            [Thermincola potens JR]
 gi|296032923|gb|ADG83691.1| Ig domain protein group 2 domain protein [Thermincola potens JR]
          Length = 4140

 Score = 95.5 bits (236), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 80/259 (30%), Positives = 119/259 (45%), Gaps = 50/259 (19%)

Query: 55   EPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVE 114
             P +VPGL + VT+++ G YH +A+ N+G VW WG+N+  QLG G   SR +   P +V 
Sbjct: 2487 NPEQVPGL-TGVTALAPGGYHVVALKNDGTVWTWGKNDSGQLGDGTYTSRFS---PGQVP 2542

Query: 115  GLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKI 174
            GL  V   AA A+  V   +  DG++W WG +  GQLG    +  A   S V+    + +
Sbjct: 2543 GLTGVKAVAAGANHTV--VLKTDGTVWAWGNNMYGQLGTSPSVL-AKTYSPVQIPGIDSV 2599

Query: 175  VKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSST 234
            V++  G  H LA+  DG ++ WG + +G++GN G A  S+ +DS                
Sbjct: 2600 VEIGAGIWHTLARRADGTVWAWGRNIEGQVGN-GSA--SAVVDS---------------- 2640

Query: 235  IEKAQKLVSEGMEKEKYMPIIWEPFLVEGVE-VVDIACGFDHSLVLGRNGVLLSCGSNVY 293
                                   P  V G+  V  +A G  H+L L  +G + + G N  
Sbjct: 2641 -----------------------PAQVSGLTGVTKVAAGGYHNLALRSDGTVWAWGRNDK 2677

Query: 294  GQLGREKQDMGMFPVDINF 312
            GQLG         PV   +
Sbjct: 2678 GQLGTGNTVSSNVPVQTRY 2696



 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 56/149 (37%), Positives = 84/149 (56%), Gaps = 10/149 (6%)

Query: 31   SFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGR 90
            ++G+   G LG   S   V    Y P ++PG+ S V  + AG +H+LA   +G VWAWGR
Sbjct: 2568 AWGNNMYGQLGTSPS---VLAKTYSPVQIPGIDS-VVEIGAGIWHTLARRADGTVWAWGR 2623

Query: 91   NNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQ 150
            N E Q+G G+  + A  + P +V GL  V   A  A G  + A+  DG++W WG++ +GQ
Sbjct: 2624 NIEGQVGNGS--ASAVVDSPAQVSGLTGVTKVA--AGGYHNLALRSDGTVWAWGRNDKGQ 2679

Query: 151  LGLGKDITEAI-VPSRVEALAGEKIVKVS 178
            LG G  ++  + V +R +  AG  +V VS
Sbjct: 2680 LGTGNTVSSNVPVQTRYDQ-AGPAVVGVS 2707



 Score = 79.0 bits (193), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 54/171 (31%), Positives = 89/171 (52%), Gaps = 8/171 (4%)

Query: 54   YEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRV 113
            + P +VPGL + V +V+AG  H++ +  +G VWAWG N   QLG        T++ P ++
Sbjct: 2536 FSPGQVPGL-TGVKAVAAGANHTVVLKTDGTVWAWGNNMYGQLGTSPSVLAKTYS-PVQI 2593

Query: 114  EGLDQV-NVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGE 172
             G+D V  + A     +   A   DG++W WG++  GQ+G G        P++V  L G 
Sbjct: 2594 PGIDSVVEIGAGIWHTLARRA---DGTVWAWGRNIEGQVGNGSASAVVDSPAQVSGLTG- 2649

Query: 173  KIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRS 223
             + KV+ G  H LA   DG ++ WG +  G++G       + P+ +  D++
Sbjct: 2650 -VTKVAAGGYHNLALRSDGTVWAWGRNDKGQLGTGNTVSSNVPVQTRYDQA 2699



 Score = 49.3 bits (116), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 35/100 (35%), Positives = 49/100 (49%), Gaps = 6/100 (6%)

Query: 63   PSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQV--- 119
            P   T ++AG  HS+AV  + A+  WG N++ QLG G       +  P  V   D     
Sbjct: 1947 PPPFTDIAAGTDHSMAVRGDSALVGWGANDDGQLGDGHFGEPVPY--PVLVRNADGTPWN 2004

Query: 120  NVCAAFASGVVSSAI-GDDGSLWVWGKSKRGQLGLGKDIT 158
             V +  + G   +A+ G DGS+W WG +  GQLG G   T
Sbjct: 2005 PVLSGMSPGSTHTAVLGSDGSVWSWGNNAFGQLGNGSYAT 2044


>gi|86129504|ref|NP_001034387.1| probable E3 ubiquitin-protein ligase HERC3 [Gallus gallus]
 gi|60098971|emb|CAH65316.1| hypothetical protein RCJMB04_17g7 [Gallus gallus]
          Length = 1050

 Score = 95.5 bits (236), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 79/293 (26%), Positives = 134/293 (45%), Gaps = 54/293 (18%)

Query: 66  VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAF 125
           +  V+ G  HS+A+++ G V++WG  ++ QLG   +E   T   P+ ++ L+Q  +    
Sbjct: 86  IVHVACGESHSVALSDQGQVFSWGAGSDGQLGLTTIEDAVTV--PRLIKKLNQQTILQIS 143

Query: 126 ASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHAL 185
                  A+  DG  + WG++  GQLGLGK+      P RV++L G  + +V+ G  H+ 
Sbjct: 144 CGNWHCLALAADGQFFTWGQNSYGQLGLGKECPSQASPQRVKSLDGIPLAQVAAGGAHSF 203

Query: 186 AQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEG 245
           A +  G +FGWG ++ G++G   +    SP    + RS                      
Sbjct: 204 ALSLSGAVFGWGKNSSGQLGLSDERDRESPCHVKLLRSQ--------------------- 242

Query: 246 MEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGM 305
                              +VV I+CG +H+ VL ++G + + G+   GQLG +  +  +
Sbjct: 243 -------------------KVVYISCGEEHTAVLTKSGGVFTFGAGSCGQLGHDSMNDEV 283

Query: 306 FP---VDINFHPVS-ISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLG 354
            P   +++    VS I+ G  H+LA   V SS +      I ++G     QLG
Sbjct: 284 NPRRVLELMGSEVSQIACGRHHTLAF--VPSSGM------IYAFGCGTRGQLG 328



 Score = 85.1 bits (209), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 81/272 (29%), Positives = 122/272 (44%), Gaps = 51/272 (18%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGL-PSDVTSVSAGHYHSLAVTNNGAVWA 87
           V S+G GS G LGL T    V      P  +  L    +  +S G++H LA+  +G  + 
Sbjct: 105 VFSWGAGSDGQLGLTTIEDAVT----VPRLIKKLNQQTILQISCGNWHCLALAADGQFFT 160

Query: 88  WGRNNEVQLGRGA-LESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKS 146
           WG+N+  QLG G    S+A+   P+RV+ LD + +    A G  S A+   G+++ WGK+
Sbjct: 161 WGQNSYGQLGLGKECPSQAS---PQRVKSLDGIPLAQVAAGGAHSFALSLSGAVFGWGKN 217

Query: 147 KRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGN 206
             GQLGL  D  +   P  V+ L  +K+V +S G  H    T+ G +F +G  + G++G+
Sbjct: 218 SSGQLGLS-DERDRESPCHVKLLRSQKVVYISCGEEHTAVLTKSGGVFTFGAGSCGQLGH 276

Query: 207 LGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEV 266
                E +P                        + V E M                G EV
Sbjct: 277 DSMNDEVNP------------------------RRVLELM----------------GSEV 296

Query: 267 VDIACGFDHSLVL-GRNGVLLSCGSNVYGQLG 297
             IACG  H+L     +G++ + G    GQLG
Sbjct: 297 SQIACGRHHTLAFVPSSGMIYAFGCGTRGQLG 328



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 76/292 (26%), Positives = 125/292 (42%), Gaps = 69/292 (23%)

Query: 87  AWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKS 146
            WG ++  Q G G+   +    +P+    +   NV      G  S  + +DG ++  G +
Sbjct: 3   CWGYSSFGQPGIGS-NLQVIIPEPQVYGFIHDRNVKEVACGGNHSVFLLEDGEVYTCGLN 61

Query: 147 KRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGN 206
            +GQLG     +E   P  + ALAG+ IV V+ G  H++A ++ G++F WG  +DG++G 
Sbjct: 62  TKGQLG---HESEGSKPEPIGALAGQHIVHVACGESHSVALSDQGQVFSWGAGSDGQLG- 117

Query: 207 LGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVE- 265
                                     +TIE A                +  P L++ +  
Sbjct: 118 -------------------------LTTIEDA----------------VTVPRLIKKLNQ 136

Query: 266 --VVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREK----QDMGMFPVDINFHPVS-IS 318
             ++ I+CG  H L L  +G   + G N YGQLG  K    Q        ++  P++ ++
Sbjct: 137 QTILQISCGNWHCLALAADGQFFTWGQNSYGQLGLGKECPSQASPQRVKSLDGIPLAQVA 196

Query: 319 SGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLG------RMGPDNVPLV 364
           +G  HS A+      +++G   G   WG N S QLG      R  P +V L+
Sbjct: 197 AGGAHSFAL------SLSGAVFG---WGKNSSGQLGLSDERDRESPCHVKLL 239


>gi|449453906|ref|XP_004144697.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC4-like [Cucumis
           sativus]
          Length = 481

 Score = 95.5 bits (236), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 92/311 (29%), Positives = 145/311 (46%), Gaps = 53/311 (17%)

Query: 69  VSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASG 128
           ++ G  H+L +T +G V+A G NN  QLG    +  +T     R+   + +++ A +   
Sbjct: 135 IACGGAHTLFLTESGRVYATGLNNFGQLGISDEKRFSTEPVEVRIPK-EAMHISAGYNHS 193

Query: 129 VVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAI-VPSRVEALAGEKIVKVSFGWGHALAQ 187
            V +A   DG L++WG +  GQLGLGK   +A+ +P++V++L G  I + + G  H++A 
Sbjct: 194 CVVTA---DGELYMWGVNSNGQLGLGKKSAKAVHLPTKVDSLDGIVIKRAALGSDHSIAV 250

Query: 188 TEDGKLFGWGYSADGRIGNLGKALESS---PLDSNIDRSSESDQEISSSTI--------- 235
            + G++F WG   DGR G LG   ES+    L S  + +    +E+    +         
Sbjct: 251 ADGGEVFSWG---DGRSGRLGHGHESTFLGFLKSTSEHTPRLIKELEGIKVKHVAAGMLH 307

Query: 236 --------------EKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGR 281
                         E+A   VS G   +   P +    L    +  ++ACG  H+ VL +
Sbjct: 308 SACVDENGAVYIFGERATNRVSFGEANKATTPSLISTLL----DCEEVACGGYHTCVLTK 363

Query: 282 NGVLLSCGSNVYGQLGREKQDMGMFPVDI----NFHPVS-ISSGLGHSLAICEVRSSNVT 336
            G L S GSN  G LG     +   P  +    +  PVS +S G  H+ AI        +
Sbjct: 364 GGDLYSWGSNENGCLGNGSTSVSHLPERVEGPFSKSPVSKVSCGWKHTAAI--------S 415

Query: 337 GGARGIVSWGW 347
           GGA  I +WGW
Sbjct: 416 GGA--IFTWGW 424



 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 74/263 (28%), Positives = 108/263 (41%), Gaps = 49/263 (18%)

Query: 24  ASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSD-----VTSVSAGHYHSLA 78
           A G  V S+GDG  G LG     T +G         P L  +     V  V+AG  HS  
Sbjct: 251 ADGGEVFSWGDGRSGRLGHGHESTFLGFLKSTSEHTPRLIKELEGIKVKHVAAGMLHSAC 310

Query: 79  VTNNGAVWAWGR--NNEVQLGRGALESRATWNDPKRVEGLDQVN--VCAAFASGVVSSAI 134
           V  NGAV+ +G    N V  G     ++AT   P  +  L       C  + + V++   
Sbjct: 311 VDENGAVYIFGERATNRVSFGEA---NKAT--TPSLISTLLDCEEVACGGYHTCVLTKG- 364

Query: 135 GDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEA-LAGEKIVKVSFGWGHALAQTEDGKL 193
              G L+ WG ++ G LG G   + + +P RVE   +   + KVS GW H  A    G +
Sbjct: 365 ---GDLYSWGSNENGCLGNG-STSVSHLPERVEGPFSKSPVSKVSCGWKHT-AAISGGAI 419

Query: 194 FGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMP 253
           F WG+   G  G             ++D  S   Q             +  G + +   P
Sbjct: 420 FTWGWG--GSHGTF-----------SVDGHSSGGQ-------------LGHGSDVDYVKP 453

Query: 254 IIWEPFLVEGVEVVDIACGFDHS 276
              +  L E V+VV ++CGF+H+
Sbjct: 454 TKID--LGENVKVVQVSCGFNHT 474



 Score = 39.7 bits (91), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 54/243 (22%), Positives = 92/243 (37%), Gaps = 62/243 (25%)

Query: 142 VWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSAD 201
           VWG    G+LGLG ++     P    +   E +  ++ G  H L  TE G+++  G +  
Sbjct: 101 VWGNGDFGRLGLG-NLDSQWSPVPCSSFDREMLKGIACGGAHTLFLTESGRVYATGLNNF 159

Query: 202 GRIG-NLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFL 260
           G++G +  K   + P++  I +                                      
Sbjct: 160 GQLGISDEKRFSTEPVEVRIPK-------------------------------------- 181

Query: 261 VEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFHPVSISSG 320
               E + I+ G++HS V+  +G L   G N  GQLG  K+      +     P  + S 
Sbjct: 182 ----EAMHISAGYNHSCVVTADGELYMWGVNSNGQLGLGKKSAKAVHL-----PTKVDSL 232

Query: 321 LGHSLAICEVRSSNVTGGARG--IVSWGWNRSSQLG-----------RMGPDNVPLVVEG 367
            G  +    + S +    A G  + SWG  RS +LG           +   ++ P +++ 
Sbjct: 233 DGIVIKRAALGSDHSIAVADGGEVFSWGDGRSGRLGHGHESTFLGFLKSTSEHTPRLIKE 292

Query: 368 LEG 370
           LEG
Sbjct: 293 LEG 295


>gi|444912395|ref|ZP_21232559.1| BNR repeat domain protein [Cystobacter fuscus DSM 2262]
 gi|444716977|gb|ELW57814.1| BNR repeat domain protein [Cystobacter fuscus DSM 2262]
          Length = 391

 Score = 95.5 bits (236), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 100/318 (31%), Positives = 142/318 (44%), Gaps = 38/318 (11%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAW 88
           V ++G+   G LG  T+L+        P +VPGL S V +V+AG  HSL +  +G VWAW
Sbjct: 59  VWAWGENGNGELGDGTTLS-----RSTPAQVPGL-SGVLAVAAGRNHSLVLRVDGTVWAW 112

Query: 89  GRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKR 148
           G N+  QLG G   S      P +V GL  V   AA A    S A+  DG++  WG++  
Sbjct: 113 GGNSSGQLGNGTTTSSLV---PLQVPGLGGVKAIAAVA--YSSFALLSDGTVRAWGRNGF 167

Query: 149 GQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIG--- 205
           G LG   D T +   + V  L   + V ++ G  HA A   +G + GWGY+  G++G   
Sbjct: 168 GVLG---DGTTSDRYTPVPVLNLSQAVSIAAGGDHAFAVLANGTVMGWGYNYFGQVGDGT 224

Query: 206 -----------NLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKL-VSEGMEKEKYMP 253
                      NL      S + SN   + +SD  + S       +L V   +       
Sbjct: 225 TISRTAPVPVKNLTGVSAVSVMGSNSSVARKSDGTVWSWGDNWVGQLGVGSAVSTSP--- 281

Query: 254 IIWEPFLVEGVEV-VDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDIN- 311
               P  V G+   V I  G  H + L  +G L   G N+YGQLG         PV +  
Sbjct: 282 ---TPVQVPGITTAVAIQSGVGHGMALLADGTLKGWGYNLYGQLGDGTTRTRYTPVLVPG 338

Query: 312 -FHPVSISSGLGHSLAIC 328
               V +++G  HSLA+ 
Sbjct: 339 LAQVVHLAAGTLHSLAVT 356



 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 85/282 (30%), Positives = 123/282 (43%), Gaps = 60/282 (21%)

Query: 75  HSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAI 134
           H+LA+  +G VWAWG N   +LG G   SR+T   P +V GL  V   AA  +   S  +
Sbjct: 49  HTLALRYDGTVWAWGENGNGELGDGTTLSRST---PAQVPGLSGVLAVAAGRNH--SLVL 103

Query: 135 GDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEK-IVKVSFGWGHALAQTEDGKL 193
             DG++W WG +  GQLG G   T ++VP +V  L G K I  V++    + A   DG +
Sbjct: 104 RVDGTVWAWGGNSSGQLGNGT-TTSSLVPLQVPGLGGVKAIAAVAY---SSFALLSDGTV 159

Query: 194 FGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMP 253
             WG +  G +G                                      +G   ++Y P
Sbjct: 160 RAWGRNGFGVLG--------------------------------------DGTTSDRYTP 181

Query: 254 IIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDI-NF 312
           +   P L    + V IA G DH+  +  NG ++  G N +GQ+G         PV + N 
Sbjct: 182 V---PVL-NLSQAVSIAAGGDHAFAVLANGTVMGWGYNYFGQVGDGTTISRTAPVPVKNL 237

Query: 313 HPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLG 354
             VS  S +G + ++   R S+ T     + SWG N   QLG
Sbjct: 238 TGVSAVSVMGSNSSVA--RKSDGT-----VWSWGDNWVGQLG 272


>gi|260796835|ref|XP_002593410.1| hypothetical protein BRAFLDRAFT_119547 [Branchiostoma floridae]
 gi|229278634|gb|EEN49421.1| hypothetical protein BRAFLDRAFT_119547 [Branchiostoma floridae]
          Length = 538

 Score = 95.5 bits (236), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 56/158 (35%), Positives = 90/158 (56%), Gaps = 5/158 (3%)

Query: 66  VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAF 125
           V  V+ G +HSLA+T  G V+AWG NN  Q+G G   ++AT   P++V            
Sbjct: 137 VVKVACGSHHSLALTLEGEVFAWGYNNCGQVGSGTTTNQAT---PRKVAACLGTRKVTEI 193

Query: 126 ASGVVSS-AIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHA 184
           A G  SS A+ D+G ++ WG +  GQLG+G ++ +   P RV AL    +V++  G+ HA
Sbjct: 194 ACGQTSSMALLDNGEVYGWGYNGNGQLGVGNNVNQP-NPCRVAALQQMIVVQIVCGYAHA 252

Query: 185 LAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDR 222
           +A T++G ++ WG ++ G++G   KA   +P    +D+
Sbjct: 253 MALTDEGSVYAWGANSYGQLGTGNKANLVTPTKIALDK 290



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 62/237 (26%), Positives = 108/237 (45%), Gaps = 19/237 (8%)

Query: 76  SLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVC-AAFASGVVSSAI 134
           ++ +T +  V+A G N    LG G  +S     +P++++ L +  +    + SG      
Sbjct: 41  AIVITQDDDVYALGSNCSSCLGVGDAQSGL---EPRKIDILCKKKIVDIGYGSGPHVLVC 97

Query: 135 GDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEA-LAGEKIVKVSFGWGHALAQTEDGKL 193
            D+G L+ WG +   QLG G    + + P  +   L G K+VKV+ G  H+LA T +G++
Sbjct: 98  TDNGDLYSWGHNGYSQLGNGS-TNQGLSPQLITTNLIGRKVVKVACGSHHSLALTLEGEV 156

Query: 194 FGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVS---------- 243
           F WGY+  G++G+     +++P        +    EI+         L +          
Sbjct: 157 FAWGYNNCGQVGSGTTTNQATPRKVAACLGTRKVTEIACGQTSSMALLDNGEVYGWGYNG 216

Query: 244 ---EGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLG 297
               G+      P       ++ + VV I CG+ H++ L   G + + G+N YGQLG
Sbjct: 217 NGQLGVGNNVNQPNPCRVAALQQMIVVQIVCGYAHAMALTDEGSVYAWGANSYGQLG 273



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 38/108 (35%), Positives = 59/108 (54%), Gaps = 10/108 (9%)

Query: 48  GVGGDAYEP--TRVPGLPSD-VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESR 104
           GVG +  +P   RV  L    V  +  G+ H++A+T+ G+V+AWG N+  QLG G   ++
Sbjct: 221 GVGNNVNQPNPCRVAALQQMIVVQIVCGYAHAMALTDEGSVYAWGANSYGQLGTG---NK 277

Query: 105 ATWNDPKRVEGLDQVNVCAAFASGV--VSSAIGDDGSLWVWGKSKRGQ 150
           A    P ++  LD+       A+    VSSAI   G +++WG+  RGQ
Sbjct: 278 ANLVTPTKI-ALDKGRFVEIGATHYNHVSSAITQTGKVYMWGQC-RGQ 323


>gi|383319150|ref|YP_005379991.1| Alpha-tubulin suppressor and related RCC1 domain-containing protein
           [Methanocella conradii HZ254]
 gi|379320520|gb|AFC99472.1| Alpha-tubulin suppressor and related RCC1 domain-containing protein
           [Methanocella conradii HZ254]
          Length = 461

 Score = 95.5 bits (236), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 87/278 (31%), Positives = 132/278 (47%), Gaps = 57/278 (20%)

Query: 28  AVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWA 87
           +V+++G+   G LG  T+++     A  P +  GL + V +++AG  HSLA+ ++G VWA
Sbjct: 46  SVLAWGNNDHGQLGDGTTVS-----ASTPVKAKGL-THVVAIAAGASHSLALKDDGTVWA 99

Query: 88  WGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSS-AIGDDGSLWVWGKS 146
           WG N    LG G  E R T   P +V GL  V    A ++G+++S A+ DDG+LW WG +
Sbjct: 100 WGDNYNGNLGDGTTEDRLT---PVQVVGLTNVK---AISAGIMTSFALKDDGTLWAWGAN 153

Query: 147 KRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGH--ALAQTEDGKLFGWGYSADGRI 204
            RG LG G  + + + P  V+A    K+VK+    GH    A T+DG ++ WG +     
Sbjct: 154 SRGDLGDGT-LEDRLTP--VQAKVPAKVVKI----GHKGTFAVTDDGDVWAWGNNVIIVF 206

Query: 205 GNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGV 264
           GN          DS                          GM  + Y  +   PF VE  
Sbjct: 207 GN----------DSIC------------------------GMLGDNYGQVRPTPFRVEQP 232

Query: 265 EVV-DIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQ 301
             V +I  G +H + +  +G + + G N  GQLG   +
Sbjct: 233 SSVKEITNGLEHVVFIKDDGTVWTWGLNDKGQLGNNAK 270



 Score = 74.3 bits (181), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 55/172 (31%), Positives = 91/172 (52%), Gaps = 18/172 (10%)

Query: 45  SLTGVGGDAY-----EPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRG 99
           S+ G+ GD Y      P RV   PS V  ++ G  H + + ++G VW WG N++ QLG  
Sbjct: 210 SICGMLGDNYGQVRPTPFRVE-QPSSVKEITNGLEHVVFIKDDGTVWTWGLNDKGQLGNN 268

Query: 100 A-LESRATWNDPKRVEGLDQV-NVCAAFASGVVSSAIGDDGSLWVWGKSKR---GQLGLG 154
           A ++ +     P +  G++ V +V A +     S A+ DDGS+W WG+        LG+ 
Sbjct: 269 AKIDDKTVTTTPVKALGINNVKDVSAGY---YYSLALKDDGSVWKWGEDYYTIPNMLGVY 325

Query: 155 KDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGN 206
             +  A  P ++  L+G  I+ +S G    +A   DG ++GWGY+ +G++G+
Sbjct: 326 SKLVSA--PEQIGGLSG--IIAISSGNYFYIALKNDGSVWGWGYNENGQLGS 373



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 64/198 (32%), Positives = 94/198 (47%), Gaps = 27/198 (13%)

Query: 31  SFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGR 90
           ++G  S+G LG      G   D   P +   +P+ V  V  GH  + AVT++G VWAWG 
Sbjct: 149 AWGANSRGDLG-----DGTLEDRLTPVQAK-VPAKV--VKIGHKGTFAVTDDGDVWAWGN 200

Query: 91  NNEVQLGRGAL---------ESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLW 141
           N  +  G  ++         + R T   P RVE    V         VV   I DDG++W
Sbjct: 201 NVIIVFGNDSICGMLGDNYGQVRPT---PFRVEQPSSVKEITNGLEHVV--FIKDDGTVW 255

Query: 142 VWGKSKRGQLGLGKDITEAIVPSR-VEALAGEKIVKVSFGWGHALAQTEDGKLFGWG--- 197
            WG + +GQLG    I +  V +  V+AL    +  VS G+ ++LA  +DG ++ WG   
Sbjct: 256 TWGLNDKGQLGNNAKIDDKTVTTTPVKALGINNVKDVSAGYYYSLALKDDGSVWKWGEDY 315

Query: 198 YSADGRIGNLGKALESSP 215
           Y+    +G   K L S+P
Sbjct: 316 YTIPNMLGVYSK-LVSAP 332



 Score = 40.8 bits (94), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 25/72 (34%), Positives = 36/72 (50%), Gaps = 2/72 (2%)

Query: 258 PFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDIN--FHPV 315
           P       V+ I+ G  H L L  +G +L+ G+N +GQLG         PV      H V
Sbjct: 20  PCYASSPSVISISAGASHCLALTSDGSVLAWGNNDHGQLGDGTTVSASTPVKAKGLTHVV 79

Query: 316 SISSGLGHSLAI 327
           +I++G  HSLA+
Sbjct: 80  AIAAGASHSLAL 91



 Score = 39.7 bits (91), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 19/45 (42%), Positives = 30/45 (66%), Gaps = 1/45 (2%)

Query: 56  PTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGA 100
           P ++ GL S + ++S+G+Y  +A+ N+G+VW WG N   QLG  A
Sbjct: 332 PEQIGGL-SGIIAISSGNYFYIALKNDGSVWGWGYNENGQLGSHA 375


>gi|291401438|ref|XP_002717008.1| PREDICTED: hect domain and RLD 3 [Oryctolagus cuniculus]
          Length = 1504

 Score = 95.5 bits (236), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 70/248 (28%), Positives = 116/248 (46%), Gaps = 21/248 (8%)

Query: 66  VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAF 125
           +  V+ G  HSLA+++ G +++WG  ++ QLG    E       P+ ++ L+Q  +    
Sbjct: 540 IVHVACGESHSLALSDRGQLFSWGAGSDGQLGLMTTEDSVAV--PRLIQKLNQQTILQVS 597

Query: 126 ASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHAL 185
                  A+  DG  + WGK+  GQLGLGK+      P RV +L G  + +V+ G  H+ 
Sbjct: 598 CGNWHCLALAADGQFFTWGKNSHGQLGLGKEFPSQTSPQRVRSLEGIPLAQVAAGGAHSF 657

Query: 186 AQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSE----SDQEISSSTIEKA--- 238
           A +  G +FGWG +  G++G   +    SP    + R+ +    S  E  ++ + K+   
Sbjct: 658 ALSLSGAVFGWGMNNAGQLGLSDEKDRESPCHVKLLRTQKVVYISCGEEHTAVLTKSGGV 717

Query: 239 --------QKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVL-GRNGVLLSCG 289
                    +L  + M  E     + E   + G EV  IACG  H+L     +G++ + G
Sbjct: 718 FTFGAGSCGQLGHDSMNDEVNPRRVLE---LMGSEVTQIACGRQHTLAFVPSSGLIYAFG 774

Query: 290 SNVYGQLG 297
               GQLG
Sbjct: 775 CGARGQLG 782



 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 38/115 (33%), Positives = 60/115 (52%), Gaps = 20/115 (17%)

Query: 266 VVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDI----NFHPVSISSGL 321
           V ++ACG +HS+ L  +G + +CG N  GQLG E++  G  P  I    + H V ++ G 
Sbjct: 490 VKEVACGGNHSVFLLEDGEVYTCGLNTKGQLGHERE--GNKPEQIGALADQHIVHVACGE 547

Query: 322 GHSLAICEVRSSNVTGGARG-IVSWGWNRSSQLGRMGPDN---VPLVVEGLEGES 372
            HSLA+ +          RG + SWG     QLG M  ++   VP +++ L  ++
Sbjct: 548 SHSLALSD----------RGQLFSWGAGSDGQLGLMTTEDSVAVPRLIQKLNQQT 592


>gi|323453900|gb|EGB09771.1| hypothetical protein AURANDRAFT_71341 [Aureococcus anophagefferens]
          Length = 1010

 Score = 95.5 bits (236), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 80/209 (38%), Positives = 104/209 (49%), Gaps = 30/209 (14%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYE---PTRVPGLPSDVTSVSAGHYHSLAVTNNGAV 85
           V + G G+ G LGL       G  AY+   P  +  L  DV SVSAG +HSLAVT +G +
Sbjct: 576 VSACGRGTCGQLGL-------GAAAYDVSVPRPIVAL-RDVVSVSAGGHHSLAVTADGGL 627

Query: 86  WAWGRNNEVQLGRGALESRATWNDPKRV----------EGLDQVNVCA-AFASGVVSSAI 134
           WAWG+ ++ QLG G LE       P RV           G  +   CA   A G  S A+
Sbjct: 628 WAWGKASDHQLGLGNLELTVVAT-PTRVVLREAVAAAGNGAGRPARCARCSAGGAHSVAV 686

Query: 135 GDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLF 194
            D G +W WG++  GQLG G     +  P RV  L   K V  + G  H+    +DG L+
Sbjct: 687 DDAGGVWSWGRNAHGQLGHG-GTRPSPTPKRVLPLRARKCVDAAAGGFHSFVVVDDGSLY 745

Query: 195 GWGYSADGRIGNLGKALESS-----PLDS 218
            +G  ADGR+G LG  L +S     PLD+
Sbjct: 746 AFGLGADGRLG-LGHCLNASLPEKVPLDA 773



 Score = 40.0 bits (92), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 38/134 (28%), Positives = 44/134 (32%), Gaps = 53/134 (39%)

Query: 69  VSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASG 128
            SAG  HS+AV + G VW+WGRN   QLG G      T   PKRV  L       A A G
Sbjct: 676 CSAGGAHSVAVDDAGGVWSWGRNAHGQLGHGGTRPSPT---PKRVLPLRARKCVDAAAGG 732

Query: 129 VVSSAIGDDGS------------------------------------------------- 139
             S  + DDGS                                                 
Sbjct: 733 FHSFVVVDDGSLYAFGLGADGRLGLGHCLNASLPEKVPLDAFCRAAAAGAAHGAAVDDAG 792

Query: 140 -LWVWGKSKRGQLG 152
            L+ WG   +G LG
Sbjct: 793 ALYTWGDGSKGALG 806


>gi|111220790|ref|YP_711584.1| hypothetical protein FRAAL1334 [Frankia alni ACN14a]
 gi|111148322|emb|CAJ59994.1| hypothetical protein; putative signal peptide [Frankia alni ACN14a]
          Length = 408

 Score = 95.5 bits (236), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 101/325 (31%), Positives = 138/325 (42%), Gaps = 71/325 (21%)

Query: 56  PTRVPGLP--SDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRV 113
           P RV GL   +DV  V+AG Y + AV  +G  W+WG N   QLG G + +      P RV
Sbjct: 70  PVRVSGLTGLTDVVGVAAGRYAAYAVRRDGTAWSWGYNAYGQLGNGRITNSTV---PVRV 126

Query: 114 EGLDQVNVCAAFASGVVSS-AIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGE 172
            GL +V    A A G V+  A+  DG++W WG +  GQLG G  IT + VP RV  L   
Sbjct: 127 SGLTRV---VALAGGAVNGYALRQDGTVWAWGYNNYGQLGNGT-ITNSRVPVRVLGL--S 180

Query: 173 KIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISS 232
           ++V ++ G   A A  +DG ++ WG + +G++GN      +SP                 
Sbjct: 181 RVVAIAGGGTTAYAVRQDGTVWAWGDNDEGQLGN--GTTANSPF---------------- 222

Query: 233 STIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVE-VVDIACGFDHSLVLGRNGVLLSCGSN 291
                                    P  V G+  V+ IA G +    L R+G + + G+N
Sbjct: 223 -------------------------PVRVTGLSAVIAIAGGQETGYALRRDGTVWAWGAN 257

Query: 292 VYGQLGREKQDMGMFPVDI-NFHPVSISSGLGHSLAICEVRSSNVTGGARG---IVSWGW 347
             GQLG         PV I N   V+         AI      N     RG     +WG 
Sbjct: 258 DEGQLGNGTTVSSTVPVAIRNLTGVT---------AIAASSEGNSGYALRGDGTAWAWGL 308

Query: 348 NRSSQLGRMGPDN--VPLVVEGLEG 370
           N + QLG    D   VP+ V G  G
Sbjct: 309 NNTGQLGNGTDDTSLVPVQVSGSTG 333



 Score = 78.2 bits (191), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 80/273 (29%), Positives = 112/273 (41%), Gaps = 52/273 (19%)

Query: 56  PTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEG 115
           P RV GL S V +++ G   + AV  +G VWAWG N+E QLG G   +      P RV G
Sbjct: 173 PVRVLGL-SRVVAIAGGGTTAYAVRQDGTVWAWGDNDEGQLGNGTTANSPF---PVRVTG 228

Query: 116 LDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIV 175
           L  V   A         A+  DG++W WG +  GQLG G  ++   VP  +  L G   +
Sbjct: 229 LSAVIAIAGGQE--TGYALRRDGTVWAWGANDEGQLGNGTTVSS-TVPVAIRNLTGVTAI 285

Query: 176 KVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTI 235
             S       A   DG  + WG +  G++GN              D +S    ++S ST 
Sbjct: 286 AASSEGNSGYALRGDGTAWAWGLNNTGQLGN------------GTDDTSLVPVQVSGST- 332

Query: 236 EKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQ 295
                    G+                 V V  I+ G      L R+G + + GSN +GQ
Sbjct: 333 ---------GL-----------------VGVTAISAGSFSGYALRRDGTVWAWGSNFFGQ 366

Query: 296 LGREKQDMGMFPVDINFHPVSISSGLGHSLAIC 328
           LG      G      +  PV + SG+  + AI 
Sbjct: 367 LGN-----GTTTPAFSLRPVQV-SGIARADAIA 393



 Score = 77.8 bits (190), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 62/179 (34%), Positives = 88/179 (49%), Gaps = 11/179 (6%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAW 88
           V ++GD  +G LG  T+      ++  P RV GL S V +++ G     A+  +G VWAW
Sbjct: 201 VWAWGDNDEGQLGNGTTA-----NSPFPVRVTGL-SAVIAIAGGQETGYALRRDGTVWAW 254

Query: 89  GRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKR 148
           G N+E QLG G   S      P  +  L  V   AA + G    A+  DG+ W WG +  
Sbjct: 255 GANDEGQLGNGTTVSSTV---PVAIRNLTGVTAIAASSEGNSGYALRGDGTAWAWGLNNT 311

Query: 149 GQLGLGKDITEAIVPSRVEALAG-EKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGN 206
           GQLG G D T  +VP +V    G   +  +S G     A   DG ++ WG +  G++GN
Sbjct: 312 GQLGNGTDDTS-LVPVQVSGSTGLVGVTAISAGSFSGYALRRDGTVWAWGSNFFGQLGN 369


>gi|408500676|ref|YP_006864595.1| RCC1 domain-containing protein [Bifidobacterium asteroides PRL2011]
 gi|408465500|gb|AFU71029.1| RCC1 domain-containing protein [Bifidobacterium asteroides PRL2011]
          Length = 1193

 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 100/339 (29%), Positives = 141/339 (41%), Gaps = 81/339 (23%)

Query: 60   PGLPSDVT--SVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESR---------ATWN 108
            P LP D T   VSAG Y+SLAV ++G V+AWG N+  QLG  +  S          A+ N
Sbjct: 730  PDLPEDFTYMQVSAGDYYSLAVGSDGYVYAWGYNSYGQLGNNSTSSSYVPVRVRDPASPN 789

Query: 109  DPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRV-- 166
            D  +  GL  + V A       S A+G DG  + WG    G+LG     + + VP RV  
Sbjct: 790  DASK--GLKAIQVSAG---DYHSLALGSDGYAYAWGDGSYGKLG-NNSRSSSYVPVRVRD 843

Query: 167  -----EALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNID 221
                 +A  G K  +VS G  H+LA   DG  + WG  + G++GN   +  S P+    D
Sbjct: 844  PDSPNDASKGLKATQVSAGQNHSLAVGSDGYAYAWGDGSYGKLGNYSTSSSSVPVRVR-D 902

Query: 222  RSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGR 281
             +S +D                                  +G++   I+ G+ HSL +G 
Sbjct: 903  PASPTDTS--------------------------------KGLKAAQISAGYGHSLAVGS 930

Query: 282  NGVLLSCGSN-VYGQLGREKQDMGMFPVDIN-----------FHPVSISSGLGHSLAICE 329
            +G   + G N  Y QLG         PV +                 +S+G  HSLA+  
Sbjct: 931  DGYAYAWGLNDYYHQLGNNSSSNSSVPVRVRDPDSPSDASKGLKATQVSAGQEHSLAV-- 988

Query: 330  VRSSNVTGGARGIVSWGWNRSSQLGRMG---PDNVPLVV 365
                +  G A    +WG N + QLG  G   P   P+ V
Sbjct: 989  ----DKDGNA---YAWGDNDNGQLGIKGSGRPYPYPMKV 1020



 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 75/276 (27%), Positives = 112/276 (40%), Gaps = 58/276 (21%)

Query: 76  SLAVTNNGAVWAWGRNNEVQLGRGALESRATW---NDPKRVEGLD---QVNVCAAFASGV 129
           SLAV ++G  +AWG N+  +LG G    R T      P R    D           A   
Sbjct: 687 SLAVGSDGNAYAWGSNSYGRLGDGTATQRTTPVLVKKPDRKTYPDLPEDFTYMQVSAGDY 746

Query: 130 VSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRV-------EALAGEKIVKVSFGWG 182
            S A+G DG ++ WG +  GQLG     + + VP RV       +A  G K ++VS G  
Sbjct: 747 YSLAVGSDGYVYAWGYNSYGQLG-NNSTSSSYVPVRVRDPASPNDASKGLKAIQVSAGDY 805

Query: 183 HALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLV 242
           H+LA   DG  + WG  + G++GN  ++    P+     R  + D    +S         
Sbjct: 806 HSLALGSDGYAYAWGDGSYGKLGNNSRSSSYVPV-----RVRDPDSPNDAS--------- 851

Query: 243 SEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQD 302
                              +G++   ++ G +HSL +G +G   + G   YG+LG     
Sbjct: 852 -------------------KGLKATQVSAGQNHSLAVGSDGYAYAWGDGSYGKLGNYSTS 892

Query: 303 MGMFPVDIN-----------FHPVSISSGLGHSLAI 327
               PV +                 IS+G GHSLA+
Sbjct: 893 SSSVPVRVRDPASPTDTSKGLKAAQISAGYGHSLAV 928



 Score = 77.0 bits (188), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 88/311 (28%), Positives = 126/311 (40%), Gaps = 69/311 (22%)

Query: 29   VVSFGDGSQGALGLPTSLTGVGGDAYEPTRV--PGLPSDV------TSVSAGHYHSLAVT 80
              ++GDGS G LG           +Y P RV  P  P+D       T VSAG  HSLAV 
Sbjct: 816  AYAWGDGSYGKLG-----NNSRSSSYVPVRVRDPDSPNDASKGLKATQVSAGQNHSLAVG 870

Query: 81   NNGAVWAWGRNNEVQLGRGALESRATWNDPKRV----------EGLDQVNVCAAFASGVV 130
            ++G  +AWG  +  +LG  +  S +    P RV          +GL    + A +   + 
Sbjct: 871  SDGYAYAWGDGSYGKLGNYSTSSSSV---PVRVRDPASPTDTSKGLKAAQISAGYGHSL- 926

Query: 131  SSAIGDDGSLWVWG-KSKRGQLGLGKDITEAIVPSRV-------EALAGEKIVKVSFGWG 182
              A+G DG  + WG      QLG     + + VP RV       +A  G K  +VS G  
Sbjct: 927  --AVGSDGYAYAWGLNDYYHQLGNNS-SSNSSVPVRVRDPDSPSDASKGLKATQVSAGQE 983

Query: 183  HALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLV 242
            H+LA  +DG  + WG + +G++G  G                      S        K++
Sbjct: 984  HSLAVDKDGNAYAWGDNDNGQLGIKG----------------------SGRPYPYPMKVL 1021

Query: 243  SEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQD 302
            S         P  W       +  V I  G  HSL +G +G   + GSN  G+LG    +
Sbjct: 1022 SSAQSTSAAGP--W-------MRAVQITAGDHHSLAIGTDGNTKAWGSNRDGRLGDGTTN 1072

Query: 303  MGMFPVDINFH 313
                PV + F+
Sbjct: 1073 TKWAPVPVAFN 1083


>gi|449522147|ref|XP_004168089.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC3-like, partial
           [Cucumis sativus]
          Length = 302

 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 79/268 (29%), Positives = 118/268 (44%), Gaps = 50/268 (18%)

Query: 32  FGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPS-DVTSVSAGHYHSLAVTNNGAVWAWGR 90
           +G    G LGL T+      D+  P ++       +  V+AG  H+ AVT +G ++ WG 
Sbjct: 1   WGRNQNGQLGLGTTE-----DSLVPQKIQAFEGISIKMVAAGAEHTAAVTEDGELFGWGW 55

Query: 91  NNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQ 150
                LG G    R        V+G   V V   +   +  S++G    L+ +G SK GQ
Sbjct: 56  GRYGNLGLGDRNDRLVPQKVSSVDGDKMVMVACGWRHTISVSSLG---GLYTYGWSKYGQ 112

Query: 151 LGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKA 210
           LG G D  + +VP R+EAL G+ I ++S GW H +A T DGKL+GWG++  G++G     
Sbjct: 113 LGHG-DFEDRLVPHRLEALRGDNISQISGGWRHTMALTTDGKLYGWGWNKFGQVG----- 166

Query: 211 LESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIA 270
                   NID  S                            PI  +    +  +V+ I+
Sbjct: 167 -----AGDNIDHCS----------------------------PI--QIKFPQDQKVIQIS 191

Query: 271 CGFDHSLVLGRNGVLLSCGSNVYGQLGR 298
           CG+ H+L +     + S G    GQLG 
Sbjct: 192 CGWRHTLAVTDKQNVFSWGRGTNGQLGH 219



 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 75/287 (26%), Positives = 128/287 (44%), Gaps = 59/287 (20%)

Query: 88  WGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSK 147
           WGRN   QLG G  E       P++++  + +++    A    ++A+ +DG L+ WG  +
Sbjct: 1   WGRNQNGQLGLGTTEDSLV---PQKIQAFEGISIKMVAAGAEHTAAVTEDGELFGWGWGR 57

Query: 148 RGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNL 207
            G LGLG D  + +VP +V ++ G+K+V V+ GW H ++ +  G L+ +G+S  G++G+ 
Sbjct: 58  YGNLGLG-DRNDRLVPQKVSSVDGDKMVMVACGWRHTISVSSLGGLYTYGWSKYGQLGH- 115

Query: 208 GKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVV 267
                              D E          +LV   +E             + G  + 
Sbjct: 116 ------------------GDFE---------DRLVPHRLEA------------LRGDNIS 136

Query: 268 DIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINF----HPVSISSGLGH 323
            I+ G+ H++ L  +G L   G N +GQ+G         P+ I F      + IS G  H
Sbjct: 137 QISGGWRHTMALTTDGKLYGWGWNKFGQVGAGDNIDHCSPIQIKFPQDQKVIQISCGWRH 196

Query: 324 SLAICEVRSSNVTGGARGIVSWGWNRSSQLGR--MGPDNVPLVVEGL 368
           +LA+ +          + + SWG   + QLG       N P+++E L
Sbjct: 197 TLAVTD---------KQNVFSWGRGTNGQLGHGESVDRNTPMILEAL 234



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 61/212 (28%), Positives = 106/212 (50%), Gaps = 11/212 (5%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSD-VTSVSAGHYHSLAVTNNGAVWA 87
           +  +G G  G LGL     G   D   P +V  +  D +  V+ G  H+++V++ G ++ 
Sbjct: 50  LFGWGWGRYGNLGL-----GDRNDRLVPQKVSSVDGDKMVMVACGWRHTISVSSLGGLYT 104

Query: 88  WGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSK 147
           +G +   QLG G  E R     P R+E L   N+         + A+  DG L+ WG +K
Sbjct: 105 YGWSKYGQLGHGDFEDRLV---PHRLEALRGDNISQISGGWRHTMALTTDGKLYGWGWNK 161

Query: 148 RGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNL 207
            GQ+G G +I +   P +++    +K++++S GW H LA T+   +F WG   +G++G+ 
Sbjct: 162 FGQVGAGDNI-DHCSPIQIKFPQDQKVIQISCGWRHTLAVTDKQNVFSWGRGTNGQLGHG 220

Query: 208 GKALESSPLD-SNIDRSSESDQEISSSTIEKA 238
                ++P+    +     S Q+I SS I+ +
Sbjct: 221 ESVDRNTPMILEALSVDGCSGQQIESSNIDPS 252



 Score = 38.5 bits (88), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 32/130 (24%), Positives = 58/130 (44%), Gaps = 9/130 (6%)

Query: 245 GMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMG 304
           G  ++  +P   + F  EG+ +  +A G +H+  +  +G L   G   YG LG   ++  
Sbjct: 12  GTTEDSLVPQKIQAF--EGISIKMVAAGAEHTAAVTEDGELFGWGWGRYGNLGLGDRNDR 69

Query: 305 MFPVDINFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPDN--VP 362
           + P       VS   G    +  C  R +       G+ ++GW++  QLG    ++  VP
Sbjct: 70  LVP-----QKVSSVDGDKMVMVACGWRHTISVSSLGGLYTYGWSKYGQLGHGDFEDRLVP 124

Query: 363 LVVEGLEGES 372
             +E L G++
Sbjct: 125 HRLEALRGDN 134


>gi|422004219|ref|ZP_16351440.1| RCC1 domain-containing protein [Leptospira santarosai serovar
           Shermani str. LT 821]
 gi|417257019|gb|EKT86426.1| RCC1 domain-containing protein [Leptospira santarosai serovar
           Shermani str. LT 821]
          Length = 477

 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 90/302 (29%), Positives = 147/302 (48%), Gaps = 28/302 (9%)

Query: 21  MRSASGTAVVSFGDGSQGALGLPTSLTGV---GGDAYEPTRVPGLPSDVTSVSAGHYHSL 77
           M  A   +V ++G+ ++G LG+  +        GD   PT VPG+  D    + G  H+L
Sbjct: 164 MAIAKNGSVYTWGNNAKGQLGIGNNNNPNPKEAGDRLPPTLVPGI-DDAVMGAYGFNHAL 222

Query: 78  AVTNNGAVWAWGRNNEVQLGRGA--LESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIG 135
            + ++G + ++G+NN  QLG G   L   +   +P  V  L   +V    A    S+A+ 
Sbjct: 223 ILKSDGTLVSFGQNNVGQLGNGEVNLNVNSFSTNPAAVVNLR--DVIQVIAGSEHSAALT 280

Query: 136 DDGSLWVWGKSKRGQLGLGKDITEAIV---PSRVEALAGEKIVKVSFGWGHALAQTEDGK 192
           ++G ++VWGK++ G LG G+      V   P +VE L+G  I +++ G  H LA   DGK
Sbjct: 281 ENGEVYVWGKNQYGNLGNGRLSAANTVQSTPVKVEGLSG--IKQIANGRDHILALASDGK 338

Query: 193 LFGWGYSADGRIGNLGKALES-SPLDSNI----DRSSESDQEISSSTIEKAQKLVSEGME 247
           ++ WG +A G++G  G    + +P+ + +    + SS       S +I K+ ++   G  
Sbjct: 339 IYSWGLNASGQLGIGGSGFPNPTPIPTQVLNITNASSVWAGGTQSFSILKSGEVKGWGAN 398

Query: 248 K--------EKYMPIIWEPF-LVEGVE-VVDIACGFDHSLVLGRNGVLLSCGSNVYGQLG 297
                    E     ++EP   V G+E V+   CG  H+  L RNG +   G N  G LG
Sbjct: 399 GNTANLAIGETNTSKVYEPNKAVVGIENVIHFGCGATHNFALLRNGEIYGWGWNFKGSLG 458

Query: 298 RE 299
           R+
Sbjct: 459 RQ 460



 Score = 68.9 bits (167), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 84/315 (26%), Positives = 130/315 (41%), Gaps = 59/315 (18%)

Query: 67  TSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQV-NVCAAF 125
           T +SAG  HS     NG V+  GRNN  QLG G        N+   +  LD + ++ +  
Sbjct: 102 TKLSAGAAHS-GFLKNGNVYTVGRNNFGQLGTGHSTGD---NNNDVIVLLDSIRDIFSIH 157

Query: 126 ASGVVSSAIGDDGSLWVWGKSKRGQLGLG-------KDITEAIVPSRVEALAGEKIVKVS 178
            +   S AI  +GS++ WG + +GQLG+G       K+  + + P+ V  +  +  V  +
Sbjct: 158 FNQNNSMAIAKNGSVYTWGNNAKGQLGIGNNNNPNPKEAGDRLPPTLVPGI--DDAVMGA 215

Query: 179 FGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKA 238
           +G+ HAL    DG L  +G +  G++GN                  E +  ++S +   A
Sbjct: 216 YGFNHALILKSDGTLVSFGQNNVGQLGN-----------------GEVNLNVNSFSTNPA 258

Query: 239 QKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGR 298
                                +V   +V+ +  G +HS  L  NG +   G N YG LG 
Sbjct: 259 A--------------------VVNLRDVIQVIAGSEHSAALTENGEVYVWGKNQYGNLGN 298

Query: 299 EKQDMGMFPVDINFHPVSISSGLGHSLAICEVRSSNVTGGARG-IVSWGWNRSSQLGRMG 357
            +         +   PV +  GL     I   R   +   + G I SWG N S QLG  G
Sbjct: 299 GRLSAAN---TVQSTPVKV-EGLSGIKQIANGRDHILALASDGKIYSWGLNASGQLGIGG 354

Query: 358 ---PDNVPLVVEGLE 369
              P+  P+  + L 
Sbjct: 355 SGFPNPTPIPTQVLN 369



 Score = 51.6 bits (122), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 64/260 (24%), Positives = 108/260 (41%), Gaps = 58/260 (22%)

Query: 125 FASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHA 184
            ++G   S    +G+++  G++  GQLG G    +      V   +   I  + F   ++
Sbjct: 104 LSAGAAHSGFLKNGNVYTVGRNNFGQLGTGHSTGDNNNDVIVLLDSIRDIFSIHFNQNNS 163

Query: 185 LAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSE 244
           +A  ++G ++ WG +A G++G +G     +P ++  DR                      
Sbjct: 164 MAIAKNGSVYTWGNNAKGQLG-IGNNNNPNPKEAG-DR---------------------- 199

Query: 245 GMEKEKYMPIIWEPFLVEGVE-VVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDM 303
                  +P    P LV G++  V  A GF+H+L+L  +G L+S G N  GQLG  + ++
Sbjct: 200 -------LP----PTLVPGIDDAVMGAYGFNHALILKSDGTLVSFGQNNVGQLGNGEVNL 248

Query: 304 GMFPVDINFHPV-------SISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQL--G 354
            +     N   V        + +G  HS A+ E            +  WG N+   L  G
Sbjct: 249 NVNSFSTNPAAVVNLRDVIQVIAGSEHSAALTENGE---------VYVWGKNQYGNLGNG 299

Query: 355 RMGPDN----VPLVVEGLEG 370
           R+   N     P+ VEGL G
Sbjct: 300 RLSAANTVQSTPVKVEGLSG 319


>gi|390336982|ref|XP_795107.3| PREDICTED: probable E3 ubiquitin-protein ligase HERC4-like
           [Strongylocentrotus purpuratus]
          Length = 1391

 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 78/266 (29%), Positives = 132/266 (49%), Gaps = 20/266 (7%)

Query: 52  DAYEPTRVPGLPSDVTS-VSAGHYHSLAVTNNGAVWAWGRNNEVQLG--RGALESRATWN 108
           + Y+P +V  L + V   V+ G  H+LAV++ G V  WGRN+  Q G   G +E++    
Sbjct: 74  NQYKPVQVSALETVVIKHVACGDDHTLAVSDRGQVLGWGRNDRGQCGLATGDIENKPRPR 133

Query: 109 DPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAI-VPSRVE 167
             K +     V VC      + S A+  DG L+ WG +  GQLG+G  +T     P+ + 
Sbjct: 134 ILKHLASYQFVKVCCG---SLHSMALTRDGRLFSWGDNTYGQLGIGTLVTNYTDRPTELT 190

Query: 168 ALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSP-----LDSNIDR 222
           +L G  +V+V+ G  H+ A T  G +FGWG +  G++G   K  ++ P     + S + +
Sbjct: 191 SLRGVPLVRVACGGFHSFALTISGSVFGWGKNDVGQLGLGNKENKAYPTLLRNMRSQMVK 250

Query: 223 SSESDQEISSS-TIEKAQKLVSEGMEKE-----KYMPIIWEPFL-VEGVEVVDIACGFDH 275
                Q+ ++  T +    L  +G E +      Y  +     + + G ++  + CG  H
Sbjct: 251 HIACGQDHTAMLTADGGVFLFGQGSEGQLGHGSNYNEVNPRKVIDLMGSDITQVTCGKHH 310

Query: 276 SLVL-GRNGVLLSCGSNVYGQLGREK 300
           +LVL G  G L + G  ++GQLG+++
Sbjct: 311 TLVLEGSKGRLYAFGQGIHGQLGQDE 336



 Score = 87.8 bits (216), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 72/251 (28%), Positives = 123/251 (49%), Gaps = 19/251 (7%)

Query: 66  VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLG--RGALESRATWNDPKRVEGLDQVNVCA 123
           +  V+ G  H+LAV++   V  WGRN+  Q G   G +E++      + +     V VC 
Sbjct: 429 IKHVACGDDHTLAVSDRVQVLGWGRNDRGQCGLATGDIENKPRPRILRHLASYQFVKVCC 488

Query: 124 AFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAI-VPSRVEALAGEKIVKVSFGWG 182
                + S A+  DG L+ WG +  GQLG+G  +T     P+ + +L G  +V+V+ G  
Sbjct: 489 G---SLHSMALTRDGRLFSWGDNTYGQLGIGTLVTNYTDRPTELTSLRGVPLVRVACGGF 545

Query: 183 HALAQTEDGKLFGWGYSADGRIGNLGKALESSP-----LDSNIDRSSESDQEISSS-TIE 236
           H+ A T  G +FGWG +  G++G   K  +S P     + S + +     Q+ ++  T +
Sbjct: 546 HSFALTISGSVFGWGKNDVGQLGLGNKENKSYPTLLRNMRSQMVKHIACGQDHTAMLTAD 605

Query: 237 KAQKLVSEGMEKE-----KYMPIIWEPFL-VEGVEVVDIACGFDHSLVL-GRNGVLLSCG 289
               L  +G E +      Y  +     + + G ++  + CG  H+LVL G  G L + G
Sbjct: 606 GGVFLFGQGSEGQLGHGSNYNEVNPRKVIDLMGSDITQVTCGKHHTLVLEGSKGRLYAFG 665

Query: 290 SNVYGQLGREK 300
             ++GQLG+++
Sbjct: 666 QGIHGQLGQDE 676



 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 92/368 (25%), Positives = 157/368 (42%), Gaps = 57/368 (15%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAW 88
           + S+GD + G LG+ T +T       E T + G+P  +  V+ G +HS A+T +G+V+ W
Sbjct: 162 LFSWGDNTYGQLGIGTLVTNYTDRPTELTSLRGVP--LVRVACGGFHSFALTISGSVFGW 219

Query: 89  GRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKR 148
           G+N+  QLG G  E++A    P  +  +    V         ++ +  DG ++++G+   
Sbjct: 220 GKNDVGQLGLGNKENKAY---PTLLRNMRSQMVKHIACGQDHTAMLTADGGVFLFGQGSE 276

Query: 149 GQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALA-QTEDGKLFGWGYSADGRIGNL 207
           GQLG G +  E + P +V  L G  I +V+ G  H L  +   G+L+ +G    G++G  
Sbjct: 277 GQLGHGSNYNE-VNPRKVIDLMGSDITQVTCGKHHTLVLEGSKGRLYAFGQGIHGQLGQD 335

Query: 208 GKALESSPL--------DSNIDRSSESD-----------QEISSSTIEKAQKLVSEGMEK 248
                S+P          S+ +++S S                S+    A  +  + + +
Sbjct: 336 EARSCSNPQRVPGPWVPHSSTEKNSSSKGRVVRCIYAGGHHCFSTATNAADDIQIKLLFR 395

Query: 249 EKYMPIIWE----------------PFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNV 292
           +    I ++                   +E V +  +ACG DH+L +     +L  G N 
Sbjct: 396 DISTRIFFQLTXXXXXXXXXXXXXXXXXLETVVIKHVACGDDHTLAVSDRVQVLGWGRND 455

Query: 293 YGQLGREKQDMGMFPVD------INFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWG 346
            GQ G    D+   P         ++  V +  G  HS+A+        T   R + SWG
Sbjct: 456 RGQCGLATGDIENKPRPRILRHLASYQFVKVCCGSLHSMAL--------TRDGR-LFSWG 506

Query: 347 WNRSSQLG 354
            N   QLG
Sbjct: 507 DNTYGQLG 514



 Score = 82.8 bits (203), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 73/291 (25%), Positives = 128/291 (43%), Gaps = 49/291 (16%)

Query: 66  VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAF 125
           V S+S G +H+  V ++G ++  G N++ QLG+   + +     P +V  L+ V +    
Sbjct: 39  VQSISCGKHHTGIVLDDGTLYMCGANSKGQLGQDRNQYK-----PVQVSALETVVIKHVA 93

Query: 126 ASGVVSSAIGDDGSLWVWGKSKRGQLGLGK-DITEAIVPSRVEALAGEKIVKVSFGWGHA 184
                + A+ D G +  WG++ RGQ GL   DI     P  ++ LA  + VKV  G  H+
Sbjct: 94  CGDDHTLAVSDRGQVLGWGRNDRGQCGLATGDIENKPRPRILKHLASYQFVKVCCGSLHS 153

Query: 185 LAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSE 244
           +A T DG+LF WG +  G++G          + + +   ++   E++S            
Sbjct: 154 MALTRDGRLFSWGDNTYGQLG----------IGTLVTNYTDRPTELTS------------ 191

Query: 245 GMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMG 304
                           + GV +V +ACG  HS  L  +G +   G N  GQLG   ++  
Sbjct: 192 ----------------LRGVPLVRVACGGFHSFALTISGSVFGWGKNDVGQLGLGNKENK 235

Query: 305 MFPVDINFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGR 355
            +P  +     ++ S +   +A  +  ++ +T    G+  +G     QLG 
Sbjct: 236 AYPTLLR----NMRSQMVKHIACGQDHTAMLTADG-GVFLFGQGSEGQLGH 281



 Score = 77.0 bits (188), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 53/179 (29%), Positives = 93/179 (51%), Gaps = 7/179 (3%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAW 88
           + S+GD + G LG+ T +T       E T + G+P  +  V+ G +HS A+T +G+V+ W
Sbjct: 502 LFSWGDNTYGQLGIGTLVTNYTDRPTELTSLRGVP--LVRVACGGFHSFALTISGSVFGW 559

Query: 89  GRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKR 148
           G+N+  QLG G  E+++    P  +  +    V         ++ +  DG ++++G+   
Sbjct: 560 GKNDVGQLGLGNKENKSY---PTLLRNMRSQMVKHIACGQDHTAMLTADGGVFLFGQGSE 616

Query: 149 GQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALA-QTEDGKLFGWGYSADGRIGN 206
           GQLG G +  E + P +V  L G  I +V+ G  H L  +   G+L+ +G    G++G 
Sbjct: 617 GQLGHGSNYNE-VNPRKVIDLMGSDITQVTCGKHHTLVLEGSKGRLYAFGQGIHGQLGQ 674



 Score = 72.0 bits (175), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 76/283 (26%), Positives = 112/283 (39%), Gaps = 56/283 (19%)

Query: 84  AVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNV----CAAFASGVVSSAIGDDGS 139
           A + WG + E QLG G    + T    K V  L    V    C    +G+V     DDG+
Sbjct: 2   ATFCWGSSMEGQLGIGITGGQTTQEVAKEVTTLSGQRVQSISCGKHHTGIVL----DDGT 57

Query: 140 LWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYS 199
           L++ G + +GQLG  ++  +   P +V AL    I  V+ G  H LA ++ G++ GWG +
Sbjct: 58  LYMCGANSKGQLGQDRNQYK---PVQVSALETVVIKHVACGDDHTLAVSDRGQVLGWGRN 114

Query: 200 ADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPF 259
             G+ G     +E+ P                                     P I +  
Sbjct: 115 DRGQCGLATGDIENKP------------------------------------RPRILKH- 137

Query: 260 LVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFHPVSISS 319
            +   + V + CG  HS+ L R+G L S G N YGQLG     +G    +    P  ++S
Sbjct: 138 -LASYQFVKVCCGSLHSMALTRDGRLFSWGDNTYGQLG-----IGTLVTNYTDRPTELTS 191

Query: 320 GLGHSL--AICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPDN 360
             G  L    C    S     +  +  WG N   QLG    +N
Sbjct: 192 LRGVPLVRVACGGFHSFALTISGSVFGWGKNDVGQLGLGNKEN 234



 Score = 40.0 bits (92), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 31/98 (31%), Positives = 42/98 (42%), Gaps = 7/98 (7%)

Query: 265 EVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFHPVSISSGLGHS 324
           + V + CG  HS+ L R+G L S G N YGQLG     +G    +    P  ++S  G  
Sbjct: 482 QFVKVCCGSLHSMALTRDGRLFSWGDNTYGQLG-----IGTLVTNYTDRPTELTSLRGVP 536

Query: 325 L--AICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPDN 360
           L    C    S     +  +  WG N   QLG    +N
Sbjct: 537 LVRVACGGFHSFALTISGSVFGWGKNDVGQLGLGNKEN 574


>gi|408681154|ref|YP_006880981.1| RCC1 repeat domain protein [Streptomyces venezuelae ATCC 10712]
 gi|328885483|emb|CCA58722.1| RCC1 repeat domain protein [Streptomyces venezuelae ATCC 10712]
          Length = 394

 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 89/281 (31%), Positives = 136/281 (48%), Gaps = 29/281 (10%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAW 88
           V S+G+ + G LG  T+          P  V  L S V+ VSAG  H+LAV   G V AW
Sbjct: 96  VKSWGNNTTGQLGNGTTTA-----QPFPATVAAL-SGVSEVSAGLNHALAV-KGGRVLAW 148

Query: 89  GRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKR 148
           G N   QLG G  ++   +  P  V+ LD+V    A      S A+  DG++W WGK   
Sbjct: 149 GNNASKQLGTGQ-DTTTPYKAPIPVQSLDKVKDVGAGCD--FSVALRQDGTVWTWGKGDN 205

Query: 149 GQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLG 208
           G+LG G + T    P +V  LA   +  V+ G  H LA T DG +  WG  A+G++GN  
Sbjct: 206 GRLGTGNNTTRE-TPQKVPDLA--DVESVAVGCEHVLALTADGVVKAWGKGAEGQLGNDS 262

Query: 209 KALESSPLD-SNID-------RSSESDQEISSSTI----EKAQKLVSEGMEKEKYMPIIW 256
            A  S P+D +++D        S+     +   ++    + A++ + +G    +  P++ 
Sbjct: 263 TADSSRPVDVAHLDAVATVFATSASGFAVLDDGSVAGWGKNAERQLGDGTNANRTTPVVL 322

Query: 257 EPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLG 297
           +    +GV+   IA G D +L    +G ++  G+N   QLG
Sbjct: 323 DHL--KGVQ--SIAGGADFTLAALDDGSVIGWGANAAAQLG 359



 Score = 74.7 bits (182), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 64/178 (35%), Positives = 90/178 (50%), Gaps = 14/178 (7%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAW 88
           V ++G G  G LG     TG       P +VP L +DV SV+ G  H LA+T +G V AW
Sbjct: 197 VWTWGKGDNGRLG-----TGNNTTRETPQKVPDL-ADVESVAVGCEHVLALTADGVVKAW 250

Query: 89  GRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKR 148
           G+  E QLG    +S A  + P  V  LD V     FA+     A+ DDGS+  WGK+  
Sbjct: 251 GKGAEGQLGN---DSTADSSRPVDVAHLDAV--ATVFATSASGFAVLDDGSVAGWGKNAE 305

Query: 149 GQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGN 206
            QLG G +      P  ++ L G  +  ++ G    LA  +DG + GWG +A  ++G+
Sbjct: 306 RQLGDGTNANR-TTPVVLDHLKG--VQSIAGGADFTLAALDDGSVIGWGANAAAQLGD 360



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 77/296 (26%), Positives = 121/296 (40%), Gaps = 68/296 (22%)

Query: 82  NGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLW 141
           +G V +WG N   QLG G   ++     P  V  L  V+  +A   G+  +     G + 
Sbjct: 93  DGTVKSWGNNTTGQLGNGTTTAQPF---PATVAALSGVSEVSA---GLNHALAVKGGRVL 146

Query: 142 VWGKSKRGQLGLGKDITEAI-VPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSA 200
            WG +   QLG G+D T     P  V++L  +K+  V  G   ++A  +DG ++ WG   
Sbjct: 147 AWGNNASKQLGTGQDTTTPYKAPIPVQSL--DKVKDVGAGCDFSVALRQDGTVWTWGKGD 204

Query: 201 DGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFL 260
           +GR+G                         +++T E  QK+                P L
Sbjct: 205 NGRLGTG-----------------------NNTTRETPQKV----------------PDL 225

Query: 261 VEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFHPVSISSG 320
            + VE V + C  +H L L  +GV+ + G    GQLG +       PVD+          
Sbjct: 226 AD-VESVAVGC--EHVLALTADGVVKAWGKGAEGQLGNDSTADSSRPVDV---------- 272

Query: 321 LGHSLAICEVRSSNVTGGAR----GIVSWGWNRSSQLGRMGPDN--VPLVVEGLEG 370
             H  A+  V +++ +G A      +  WG N   QLG     N   P+V++ L+G
Sbjct: 273 -AHLDAVATVFATSASGFAVLDDGSVAGWGKNAERQLGDGTNANRTTPVVLDHLKG 327



 Score = 45.1 bits (105), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 46/143 (32%), Positives = 69/143 (48%), Gaps = 12/143 (8%)

Query: 12  VNVLTSRIFMRSASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSA 71
           V V    +   +A G  V ++G G++G LG  ++      D+  P  V  L + V +V A
Sbjct: 231 VAVGCEHVLALTADGV-VKAWGKGAEGQLGNDST-----ADSSRPVDVAHLDA-VATVFA 283

Query: 72  GHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVS 131
                 AV ++G+V  WG+N E QLG G   +R T   P  ++ L  V   A  A   ++
Sbjct: 284 TSASGFAVLDDGSVAGWGKNAERQLGDGTNANRTT---PVVLDHLKGVQSIAGGADFTLA 340

Query: 132 SAIGDDGSLWVWGKSKRGQLGLG 154
           +   DDGS+  WG +   QLG G
Sbjct: 341 AL--DDGSVIGWGANAAAQLGDG 361


>gi|195622006|gb|ACG32833.1| HECT domain and RCC1-like domain-containing protein 2 [Zea mays]
          Length = 353

 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 79/285 (27%), Positives = 126/285 (44%), Gaps = 50/285 (17%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPS-DVTSVSAGHYHSLAVTNNGAVWA 87
           V S+G G  G LG      G   D + P  V  L    +  ++ G  H LAVT  G V +
Sbjct: 87  VYSWGWGDFGRLG-----HGNSSDVFTPQPVKALQGLKIKQIACGDSHCLAVTMAGEVQS 141

Query: 88  WGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSK 147
           WGRN   QLG G  E       P++++  + V V    A    ++A+ +DG L+ WG  +
Sbjct: 142 WGRNQNGQLGLGTTEDSLL---PQKIQAFESVCVKMIAAGAEHTAAVTEDGDLYGWGWGR 198

Query: 148 RGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNL 207
            G LGLG D  + ++P +V ++ GEK+V V+ GW H +  ++ G L+ +G+S  G++G+ 
Sbjct: 199 YGNLGLG-DRNDRLLPEKVSSVEGEKMVLVACGWRHTITVSDSGNLYTYGWSKYGQLGH- 256

Query: 208 GKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVV 267
               E   +   +       + +  STI +                              
Sbjct: 257 -GDFEDHLVPHKV-------EALKDSTISQ------------------------------ 278

Query: 268 DIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINF 312
            I+ G+ H++ L   G L   G N +GQ+G    D    P  ++F
Sbjct: 279 -ISGGWRHTMALTSEGKLYGWGWNKFGQVGVGNNDDHSSPGQVSF 322



 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 84/313 (26%), Positives = 139/313 (44%), Gaps = 38/313 (12%)

Query: 63  PSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVC 122
           P  V  VSAG  HS+A+     + +WGR  + QLG G  E R     P  + G D   + 
Sbjct: 12  PQTVVLVSAGASHSVALLTGNVLCSWGRGEDGQLGHGDAEDRLV---PTVLSGFDAPAIT 68

Query: 123 AAFASGVVSSAIGDDG-SLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGW 181
           +       ++A  +D   ++ WG    G+LG G   ++   P  V+AL G KI +++ G 
Sbjct: 69  SVICGADHTTAYSEDELQVYSWGWGDFGRLGHGNS-SDVFTPQPVKALQGLKIKQIACGD 127

Query: 182 GHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKL 241
            H LA T  G++  WG + +G++G LG   E S L   I        ++ ++  E    +
Sbjct: 128 SHCLAVTMAGEVQSWGRNQNGQLG-LGTT-EDSLLPQKIQAFESVCVKMIAAGAEHTAAV 185

Query: 242 VSE----------------GMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVL 285
             +                G   ++ +P   +   VEG ++V +ACG+ H++ +  +G L
Sbjct: 186 TEDGDLYGWGWGRYGNLGLGDRNDRLLPE--KVSSVEGEKMVLVACGWRHTITVSDSGNL 243

Query: 286 LSCGSNVYGQLGREKQDMGMFPVDINFHPVS----ISSGLGHSLAICEVRSSNVTGGARG 341
            + G + YGQLG    +  + P  +     S    IS G  H++A+              
Sbjct: 244 YTYGWSKYGQLGHGDFEDHLVPHKVEALKDSTISQISGGWRHTMALTSEGK--------- 294

Query: 342 IVSWGWNRSSQLG 354
           +  WGWN+  Q+G
Sbjct: 295 LYGWGWNKFGQVG 307



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 63/241 (26%), Positives = 96/241 (39%), Gaps = 61/241 (25%)

Query: 140 LWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDG-KLFGWGY 198
           L  WG+ + GQLG G D  + +VP+ +       I  V  G  H  A +ED  +++ WG+
Sbjct: 34  LCSWGRGEDGQLGHG-DAEDRLVPTVLSGFDAPAITSVICGADHTTAYSEDELQVYSWGW 92

Query: 199 SADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEP 258
              GR+G+                                      G   + + P   +P
Sbjct: 93  GDFGRLGH--------------------------------------GNSSDVFTP---QP 111

Query: 259 F-LVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDIN-FHPVS 316
              ++G+++  IACG  H L +   G + S G N  GQLG    +  + P  I  F  V 
Sbjct: 112 VKALQGLKIKQIACGDSHCLAVTMAGEVQSWGRNQNGQLGLGTTEDSLLPQKIQAFESVC 171

Query: 317 ---ISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPDN---VPLVVEGLEG 370
              I++G  H+ A+ E            +  WGW R   LG +G  N   +P  V  +EG
Sbjct: 172 VKMIAAGAEHTAAVTEDGD---------LYGWGWGRYGNLG-LGDRNDRLLPEKVSSVEG 221

Query: 371 E 371
           E
Sbjct: 222 E 222


>gi|326918486|ref|XP_003205519.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC3-like
           [Meleagris gallopavo]
          Length = 1050

 Score = 95.1 bits (235), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 79/293 (26%), Positives = 134/293 (45%), Gaps = 54/293 (18%)

Query: 66  VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAF 125
           +  V+ G  HS+A+++ G V++WG  ++ QLG   +E   T   P+ ++ L+Q  +    
Sbjct: 86  IVHVACGESHSVALSDQGQVFSWGAGSDGQLGLTTIEDAVTV--PRLIKKLNQQTILQIS 143

Query: 126 ASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHAL 185
                  A+  DG  + WG++  GQLGLGK+      P RV++L G  + +V+ G  H+ 
Sbjct: 144 CGNWHCLALAADGQFFTWGQNSYGQLGLGKECPSQASPQRVKSLDGIPLAQVAAGGAHSF 203

Query: 186 AQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEG 245
           A +  G +FGWG ++ G++G   +    SP    + RS                      
Sbjct: 204 ALSLSGAVFGWGKNSSGQLGLSDERDRESPCHVKLLRSQ--------------------- 242

Query: 246 MEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGM 305
                              +VV I+CG +H+ VL ++G + + G+   GQLG +  +  +
Sbjct: 243 -------------------KVVYISCGEEHTAVLTKSGGVFTFGAGSCGQLGHDSMNDEV 283

Query: 306 FP---VDINFHPVS-ISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLG 354
            P   +++    VS I+ G  H+LA   V SS +      I ++G     QLG
Sbjct: 284 NPRRVLELMGSEVSQIACGRHHTLAF--VPSSGM------IYAFGCGTRGQLG 328



 Score = 85.1 bits (209), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 81/272 (29%), Positives = 122/272 (44%), Gaps = 51/272 (18%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGL-PSDVTSVSAGHYHSLAVTNNGAVWA 87
           V S+G GS G LGL T    V      P  +  L    +  +S G++H LA+  +G  + 
Sbjct: 105 VFSWGAGSDGQLGLTTIEDAVT----VPRLIKKLNQQTILQISCGNWHCLALAADGQFFT 160

Query: 88  WGRNNEVQLGRGA-LESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKS 146
           WG+N+  QLG G    S+A+   P+RV+ LD + +    A G  S A+   G+++ WGK+
Sbjct: 161 WGQNSYGQLGLGKECPSQAS---PQRVKSLDGIPLAQVAAGGAHSFALSLSGAVFGWGKN 217

Query: 147 KRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGN 206
             GQLGL  D  +   P  V+ L  +K+V +S G  H    T+ G +F +G  + G++G+
Sbjct: 218 SSGQLGLS-DERDRESPCHVKLLRSQKVVYISCGEEHTAVLTKSGGVFTFGAGSCGQLGH 276

Query: 207 LGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEV 266
                E +P                        + V E M                G EV
Sbjct: 277 DSMNDEVNP------------------------RRVLELM----------------GSEV 296

Query: 267 VDIACGFDHSLVL-GRNGVLLSCGSNVYGQLG 297
             IACG  H+L     +G++ + G    GQLG
Sbjct: 297 SQIACGRHHTLAFVPSSGMIYAFGCGTRGQLG 328



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 76/292 (26%), Positives = 125/292 (42%), Gaps = 69/292 (23%)

Query: 87  AWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKS 146
            WG ++  Q G G+   +    +P+    +   NV      G  S  + +DG ++  G +
Sbjct: 3   CWGYSSFGQPGIGS-NLQVIIPEPQVYGFIHDRNVKEVACGGNHSVFLLEDGEVYTCGLN 61

Query: 147 KRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGN 206
            +GQLG     +E   P  + ALAG+ IV V+ G  H++A ++ G++F WG  +DG++G 
Sbjct: 62  TKGQLG---HESEGSKPELIGALAGQHIVHVACGESHSVALSDQGQVFSWGAGSDGQLG- 117

Query: 207 LGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVE- 265
                                     +TIE A                +  P L++ +  
Sbjct: 118 -------------------------LTTIEDA----------------VTVPRLIKKLNQ 136

Query: 266 --VVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREK----QDMGMFPVDINFHPVS-IS 318
             ++ I+CG  H L L  +G   + G N YGQLG  K    Q        ++  P++ ++
Sbjct: 137 QTILQISCGNWHCLALAADGQFFTWGQNSYGQLGLGKECPSQASPQRVKSLDGIPLAQVA 196

Query: 319 SGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLG------RMGPDNVPLV 364
           +G  HS A+      +++G   G   WG N S QLG      R  P +V L+
Sbjct: 197 AGGAHSFAL------SLSGAVFG---WGKNSSGQLGLSDERDRESPCHVKLL 239



 Score = 41.2 bits (95), Expect = 0.85,   Method: Compositional matrix adjust.
 Identities = 38/129 (29%), Positives = 60/129 (46%), Gaps = 21/129 (16%)

Query: 254 IIWEPF---LVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDI 310
           II EP     +    V ++ACG +HS+ L  +G + +CG N  GQLG E +  G  P  I
Sbjct: 21  IIPEPQVYGFIHDRNVKEVACGGNHSVFLLEDGEVYTCGLNTKGQLGHESE--GSKPELI 78

Query: 311 NF----HPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPDN---VPL 363
                 H V ++ G  HS+A+ +            + SWG     QLG    ++   VP 
Sbjct: 79  GALAGQHIVHVACGESHSVALSD---------QGQVFSWGAGSDGQLGLTTIEDAVTVPR 129

Query: 364 VVEGLEGES 372
           +++ L  ++
Sbjct: 130 LIKKLNQQT 138


>gi|60097906|ref|NP_080268.1| E3 ISG15--protein ligase Herc6 [Mus musculus]
 gi|403399416|sp|F2Z461.1|HERC6_MOUSE RecName: Full=E3 ISG15--protein ligase Herc6
          Length = 1003

 Score = 95.1 bits (235), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 72/250 (28%), Positives = 128/250 (51%), Gaps = 23/250 (9%)

Query: 65  DVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAA 124
           ++   ++G +HSL + +N  V++ G N+  QLG+   +S      P+ ++ L+ ++V   
Sbjct: 23  ELLQAASGEHHSLLLFSNHRVYSCGDNSWGQLGQRRDQST---ERPEPIQALNDLHVDLV 79

Query: 125 FASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHA 184
                 S A+   G ++ WG    GQLG+G+    + +P++++ALAG KI++VS G  H+
Sbjct: 80  SCGKEHSVAVCHKGKVFAWGAGSEGQLGIGEFKEISFMPTKIKALAGIKIIQVSCGHYHS 139

Query: 185 LAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSES---DQEISSSTIEKAQKL 241
           LA +EDG +F WG +++G++G LGK   S  +   + +S E     Q  +  T   A  L
Sbjct: 140 LALSEDGHVFSWGRNSEGQLG-LGKNSRSQAIPQKV-KSLEGIPLAQVAAGGTHSFALSL 197

Query: 242 V------------SEGMEKEKYMPIIWEPFLV---EGVEVVDIACGFDHSLVLGRNGVLL 286
                           +   K    I++P  +   + + V+ I+CG++H+ VL   G + 
Sbjct: 198 TGTSFGWGSNRSGQLALSGNKVKEQIYKPHSIGALKNLSVIYISCGYEHTAVLTEEGQVF 257

Query: 287 SCGSNVYGQL 296
           + G N  GQL
Sbjct: 258 TFGGNSSGQL 267



 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 63/242 (26%), Positives = 103/242 (42%), Gaps = 62/242 (25%)

Query: 129 VVSSAIGDDGSLWVW--------GKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFG 180
           ++ +A G+  SL ++        G +  GQLG  +D +    P  ++AL    +  VS G
Sbjct: 24  LLQAASGEHHSLLLFSNHRVYSCGDNSWGQLGQRRDQSTE-RPEPIQALNDLHVDLVSCG 82

Query: 181 WGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQK 240
             H++A    GK+F WG  ++G++G +G+  E S + + I                KA  
Sbjct: 83  KEHSVAVCHKGKVFAWGAGSEGQLG-IGEFKEISFMPTKI----------------KA-- 123

Query: 241 LVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREK 300
                               + G++++ ++CG  HSL L  +G + S G N  GQLG  K
Sbjct: 124 --------------------LAGIKIIQVSCGHYHSLALSEDGHVFSWGRNSEGQLGLGK 163

Query: 301 QDMGM-FPVDIN----FHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGR 355
                  P  +          +++G  HS A+      ++TG + G   WG NRS QL  
Sbjct: 164 NSRSQAIPQKVKSLEGIPLAQVAAGGTHSFAL------SLTGTSFG---WGSNRSGQLAL 214

Query: 356 MG 357
            G
Sbjct: 215 SG 216



 Score = 46.2 bits (108), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 31/96 (32%), Positives = 45/96 (46%), Gaps = 13/96 (13%)

Query: 263 GVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDI----NFHPVSIS 318
           G+E++  A G  HSL+L  N  + SCG N +GQLG+ +      P  I    + H   +S
Sbjct: 21  GIELLQAASGEHHSLLLFSNHRVYSCGDNSWGQLGQRRDQSTERPEPIQALNDLHVDLVS 80

Query: 319 SGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLG 354
            G  HS+A+C             + +WG     QLG
Sbjct: 81  CGKEHSVAVCH---------KGKVFAWGAGSEGQLG 107


>gi|74204005|dbj|BAE29004.1| unnamed protein product [Mus musculus]
          Length = 926

 Score = 95.1 bits (235), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 72/250 (28%), Positives = 128/250 (51%), Gaps = 23/250 (9%)

Query: 65  DVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAA 124
           ++   ++G +HSL + +N  V++ G N+  QLG+   +S      P+ ++ L+ ++V   
Sbjct: 23  ELLQAASGEHHSLLLFSNHRVYSCGDNSWGQLGQRRDQST---ERPEPIQALNDLHVDLV 79

Query: 125 FASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHA 184
                 S A+   G ++ WG    GQLG+G+    + +P++++ALAG KI++VS G  H+
Sbjct: 80  SCGKEHSVAVCHKGKVFAWGAGSEGQLGIGEFKEISFMPTKIKALAGIKIIQVSCGHYHS 139

Query: 185 LAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSES---DQEISSSTIEKAQKL 241
           LA +EDG +F WG +++G++G LGK   S  +   + +S E     Q  +  T   A  L
Sbjct: 140 LALSEDGHVFSWGRNSEGQLG-LGKNSRSQAIPQKV-KSLEGIPLAQVAAGGTHSFALSL 197

Query: 242 V------------SEGMEKEKYMPIIWEPFLV---EGVEVVDIACGFDHSLVLGRNGVLL 286
                           +   K    I++P  +   + + V+ I+CG++H+ VL   G + 
Sbjct: 198 TGTSFGWGSNRSGQLALSGNKVKEQIYKPHSIGALKNLSVIYISCGYEHTAVLTEEGQVF 257

Query: 287 SCGSNVYGQL 296
           + G N  GQL
Sbjct: 258 TFGGNSSGQL 267



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 63/242 (26%), Positives = 103/242 (42%), Gaps = 62/242 (25%)

Query: 129 VVSSAIGDDGSLWVW--------GKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFG 180
           ++ +A G+  SL ++        G +  GQLG  +D +    P  ++AL    +  VS G
Sbjct: 24  LLQAASGEHHSLLLFSNHRVYSCGDNSWGQLGQRRDQSTE-RPEPIQALNDLHVDLVSCG 82

Query: 181 WGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQK 240
             H++A    GK+F WG  ++G++G +G+  E S + + I                KA  
Sbjct: 83  KEHSVAVCHKGKVFAWGAGSEGQLG-IGEFKEISFMPTKI----------------KA-- 123

Query: 241 LVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREK 300
                               + G++++ ++CG  HSL L  +G + S G N  GQLG  K
Sbjct: 124 --------------------LAGIKIIQVSCGHYHSLALSEDGHVFSWGRNSEGQLGLGK 163

Query: 301 QDMGM-FPVDIN----FHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGR 355
                  P  +          +++G  HS A+      ++TG + G   WG NRS QL  
Sbjct: 164 NSRSQAIPQKVKSLEGIPLAQVAAGGTHSFAL------SLTGTSFG---WGSNRSGQLAL 214

Query: 356 MG 357
            G
Sbjct: 215 SG 216



 Score = 46.2 bits (108), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 31/96 (32%), Positives = 45/96 (46%), Gaps = 13/96 (13%)

Query: 263 GVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDI----NFHPVSIS 318
           G+E++  A G  HSL+L  N  + SCG N +GQLG+ +      P  I    + H   +S
Sbjct: 21  GIELLQAASGEHHSLLLFSNHRVYSCGDNSWGQLGQRRDQSTERPEPIQALNDLHVDLVS 80

Query: 319 SGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLG 354
            G  HS+A+C             + +WG     QLG
Sbjct: 81  CGKEHSVAVCH---------KGKVFAWGAGSEGQLG 107


>gi|350587982|ref|XP_003129374.3| PREDICTED: probable E3 ubiquitin-protein ligase HERC3 [Sus scrofa]
          Length = 1050

 Score = 95.1 bits (235), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 88/324 (27%), Positives = 141/324 (43%), Gaps = 54/324 (16%)

Query: 28  AVVSFGDGSQGALGLPTS-LTGVGGDAYEPTRVPGLPSD-VTSVSAGHYHSLAVTNNGAV 85
           +V    DG     GL T    G   +  +P ++  L  + +  V+ G  HSLA+++ G +
Sbjct: 46  SVFLLEDGEVYTCGLNTKGQLGHEREGNKPEQIGALADEHIVHVACGESHSLALSDRGQL 105

Query: 86  WAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGK 145
           ++WG  ++ QLG    E       P+ ++ L+Q  +           A+  DG  + WGK
Sbjct: 106 FSWGAGSDGQLGLMTTEESVAV--PRLIQKLNQQTILQVSCGNWHCLALAADGQFFTWGK 163

Query: 146 SKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIG 205
           +  GQLGLGK+      P RV +L G  + +V+ G  H+ A +  G +FGWG +  G++G
Sbjct: 164 NSHGQLGLGKEFPSQASPQRVRSLEGIPLAQVAAGGAHSFALSLSGAVFGWGMNNAGQLG 223

Query: 206 NLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVE 265
                     L    DR S    ++      +AQK                         
Sbjct: 224 ----------LSDEEDRESPCHVKLL-----RAQK------------------------- 243

Query: 266 VVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDI----NFHPVSISSGL 321
           VV I+CG +H+ VL ++G + + G+   GQLG +  +  + P  +          I+ G 
Sbjct: 244 VVYISCGEEHTAVLTKSGGVFTFGAGSCGQLGHDSMNDEVNPRRVLELMGSEVTQIACGR 303

Query: 322 GHSLAICEVRSSNVT----GGARG 341
            H+LA   V SS +      GARG
Sbjct: 304 QHTLAF--VPSSGLIYAFGCGARG 325



 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 67/244 (27%), Positives = 105/244 (43%), Gaps = 70/244 (28%)

Query: 136 DDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFG 195
           +DG ++  G + +GQLG  +   E   P ++ ALA E IV V+ G  H+LA ++ G+LF 
Sbjct: 51  EDGEVYTCGLNTKGQLGHER---EGNKPEQIGALADEHIVHVACGESHSLALSDRGQLFS 107

Query: 196 WGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPII 255
           WG  +DG++G L    ES  +   I       Q+++  TI                    
Sbjct: 108 WGAGSDGQLG-LMTTEESVAVPRLI-------QKLNQQTI-------------------- 139

Query: 256 WEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFHPV 315
                      + ++CG  H L L  +G   + G N +GQLG  K+    FP   +   V
Sbjct: 140 -----------LQVSCGNWHCLALAADGQFFTWGKNSHGQLGLGKE----FPSQASPQRV 184

Query: 316 ---------SISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLG------RMGPDN 360
                     +++G  HS A+      +++G   G   WG N + QLG      R  P +
Sbjct: 185 RSLEGIPLAQVAAGGAHSFAL------SLSGAVFG---WGMNNAGQLGLSDEEDRESPCH 235

Query: 361 VPLV 364
           V L+
Sbjct: 236 VKLL 239



 Score = 52.0 bits (123), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 39/115 (33%), Positives = 59/115 (51%), Gaps = 20/115 (17%)

Query: 266 VVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDI----NFHPVSISSGL 321
           V ++ACG DHS+ L  +G + +CG N  GQLG E++  G  P  I    + H V ++ G 
Sbjct: 36  VKEVACGGDHSVFLLEDGEVYTCGLNTKGQLGHERE--GNKPEQIGALADEHIVHVACGE 93

Query: 322 GHSLAICEVRSSNVTGGARG-IVSWGWNRSSQLGRMGPDN---VPLVVEGLEGES 372
            HSLA+ +          RG + SWG     QLG M  +    VP +++ L  ++
Sbjct: 94  SHSLALSD----------RGQLFSWGAGSDGQLGLMTTEESVAVPRLIQKLNQQT 138


>gi|403273887|ref|XP_003928729.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC4 isoform 3
           [Saimiri boliviensis boliviensis]
          Length = 979

 Score = 95.1 bits (235), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 78/316 (24%), Positives = 137/316 (43%), Gaps = 49/316 (15%)

Query: 55  EPTRVPGLPS-DVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRV 113
           +P +V  L + ++ +VS G  H+LA+ + G V+AWG +++ QLG   L S      P+ +
Sbjct: 74  KPEQVVALDAQNIVAVSCGEAHTLALNDKGQVYAWGLDSDGQLG--LLGSEECIRVPRNI 131

Query: 114 EGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEK 173
           + L  + +         S A+     ++ WG++K GQLGLG D  +   P  +++L G  
Sbjct: 132 KSLSDIQIVQVACGYYHSLALSKASEVFCWGQNKYGQLGLGTDCKKQTSPQLIKSLLGIP 191

Query: 174 IVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSS 233
            ++V+ G  H+   T  G +FGWG +  G++G          L+                
Sbjct: 192 FMQVAAGGAHSFVLTLSGAIFGWGRNKFGQLG----------LND--------------- 226

Query: 234 TIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVY 293
                        E ++Y+P + +   +   ++V I CG DH+  L + G + + G+  Y
Sbjct: 227 -------------ENDRYVPNLLKS--LRSQKIVYICCGEDHTAALTKEGGVFTFGAGGY 271

Query: 294 GQLGREKQDMGMFPVDINFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQL 353
           GQLG       + P  +      +   +   +A     +S     +  I S+G   + QL
Sbjct: 272 GQLGHNSTSHEINPRKV----FELMGSIVTQIACGRQHTSAFVPSSGRIYSFGLGGNGQL 327

Query: 354 GRMGPDN--VPLVVEG 367
           G     N   P  V+G
Sbjct: 328 GTGSTSNRKSPFTVKG 343



 Score = 81.3 bits (199), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 61/192 (31%), Positives = 100/192 (52%), Gaps = 16/192 (8%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVP-GLPS----DVTSVSAGHYHSLAVTNNG 83
           V ++G  S G LGL      +G +  E  RVP  + S     +  V+ G+YHSLA++   
Sbjct: 105 VYAWGLDSDGQLGL------LGSE--ECIRVPRNIKSLSDIQIVQVACGYYHSLALSKAS 156

Query: 84  AVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVW 143
            V+ WG+N   QLG G    + T   P+ ++ L  +      A G  S  +   G+++ W
Sbjct: 157 EVFCWGQNKYGQLGLGTDCKKQT--SPQLIKSLLGIPFMQVAAGGAHSFVLTLSGAIFGW 214

Query: 144 GKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGR 203
           G++K GQLGL  D  +  VP+ +++L  +KIV +  G  H  A T++G +F +G    G+
Sbjct: 215 GRNKFGQLGLN-DENDRYVPNLLKSLRSQKIVYICCGEDHTAALTKEGGVFTFGAGGYGQ 273

Query: 204 IGNLGKALESSP 215
           +G+   + E +P
Sbjct: 274 LGHNSTSHEINP 285



 Score = 72.0 bits (175), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 68/273 (24%), Positives = 111/273 (40%), Gaps = 57/273 (20%)

Query: 87  AWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKS 146
            WG  +  QLG G ++      +P++ +      V         +  + DDG+++  G +
Sbjct: 3   CWGNASFGQLGLGGIDEEIVL-EPRKSDFFINKKVRDVGCGLRHTVFVLDDGTVYTCGCN 61

Query: 147 KRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGN 206
             GQLG  K   +   P +V AL  + IV VS G  H LA  + G+++ WG  +DG++G 
Sbjct: 62  DLGQLGHEKSRKK---PEQVVALDAQNIVAVSCGEAHTLALNDKGQVYAWGLDSDGQLGL 118

Query: 207 LGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEV 266
           LG   E   +  NI   S+                                      +++
Sbjct: 119 LGSE-ECIRVPRNIKSLSD--------------------------------------IQI 139

Query: 267 VDIACGFDHSLVLGRNGVLLSCGSNVYGQLG-----REKQDMGMFPVDINFHPVSISSGL 321
           V +ACG+ HSL L +   +   G N YGQLG     +++    +    +    + +++G 
Sbjct: 140 VQVACGYYHSLALSKASEVFCWGQNKYGQLGLGTDCKKQTSPQLIKSLLGIPFMQVAAGG 199

Query: 322 GHSLAICEVRSSNVTGGARGIVSWGWNRSSQLG 354
            HS  +          GA  I  WG N+  QLG
Sbjct: 200 AHSFVL-------TLSGA--IFGWGRNKFGQLG 223


>gi|348563446|ref|XP_003467518.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC3-like [Cavia
           porcellus]
          Length = 1050

 Score = 95.1 bits (235), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 79/288 (27%), Positives = 129/288 (44%), Gaps = 23/288 (7%)

Query: 28  AVVSFGDGSQGALGLPTS-LTGVGGDAYEPTRVPGLPSD-VTSVSAGHYHSLAVTNNGAV 85
            V    DG     GL T    G   +  +P ++  L    +  V+ G  HSLA+++ G +
Sbjct: 46  CVFLLEDGEVYTCGLNTKGQLGHEREGNQPEQIGALADQHIIHVACGESHSLALSDQGQL 105

Query: 86  WAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGK 145
           ++WG  ++ QLG    E       P+ ++ L+Q  +           A+  DG  + WGK
Sbjct: 106 FSWGAGSDGQLGLMTTEDSVAV--PRLIQKLNQQTILQVSCGNWHCLALATDGQFFTWGK 163

Query: 146 SKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIG 205
           +  GQLGLGK+      P RV +L G  + +V+ G  H+ A +  G +FGWG +  G++G
Sbjct: 164 NSHGQLGLGKEFPSQTSPQRVRSLEGIPLAQVAAGGAHSFALSLSGAVFGWGMNNAGQLG 223

Query: 206 NLGKALESSPLDSNIDRSSE----SDQEISSSTIEKAQKLVSEG-----------MEKEK 250
              +    SP    + R+ +    S  E  ++ + K+  + + G           M  E 
Sbjct: 224 LSDEKDRESPCHVKLLRTQKVVYISCGEEHTAVLTKSGGVFTFGAGSCGQLGHDSMNDEV 283

Query: 251 YMPIIWEPFLVEGVEVVDIACGFDHSLVL-GRNGVLLSCGSNVYGQLG 297
               + E   + G EV  IACG  H+L     +G++ + G    GQLG
Sbjct: 284 NPRRVLE---LMGSEVTQIACGRQHTLAFVPSSGLIYAFGCGARGQLG 328



 Score = 49.3 bits (116), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 36/120 (30%), Positives = 58/120 (48%), Gaps = 18/120 (15%)

Query: 260 LVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDI----NFHPV 315
            V    V ++ACG DH + L  +G + +CG N  GQLG E++  G  P  I    + H +
Sbjct: 30  FVSDRSVKEVACGGDHCVFLLEDGEVYTCGLNTKGQLGHERE--GNQPEQIGALADQHII 87

Query: 316 SISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPDN---VPLVVEGLEGES 372
            ++ G  HSLA+ +            + SWG     QLG M  ++   VP +++ L  ++
Sbjct: 88  HVACGESHSLALSD---------QGQLFSWGAGSDGQLGLMTTEDSVAVPRLIQKLNQQT 138


>gi|330837672|ref|YP_004412313.1| chromosome condensation regulator RCC1 [Sphaerochaeta coccoides DSM
           17374]
 gi|329749575|gb|AEC02931.1| regulator of chromosome condensation RCC1 [Sphaerochaeta coccoides
           DSM 17374]
          Length = 812

 Score = 95.1 bits (235), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 84/296 (28%), Positives = 135/296 (45%), Gaps = 38/296 (12%)

Query: 66  VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQ--VNVCA 123
           V SVSAG YH++ +  +G +WA G N + QLG G    R+T    K     D    +V  
Sbjct: 440 VKSVSAGGYHTMILKTDGTLWATGYNYDGQLGVGDNTDRSTPVQVKASTAADDFMTDVAD 499

Query: 124 AFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAG-----EKIVKVS 178
            FA    +  +  DG+LW  G +  GQLG+G DI+ +  P RV+A          +  VS
Sbjct: 500 VFAGESHTMIVKKDGTLWATGYNNHGQLGVGDDISRS-TPVRVKASTDPDDFMTDVAAVS 558

Query: 179 FGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSST---- 234
            G GH +   +DG L+  GY+ DG++G       S+P+      +  ++  ++ S     
Sbjct: 559 VGGGHTMILKKDGTLWATGYNYDGQLGVGDYNDRSTPVPVPSMNTDPNNPVVAVSVGFSH 618

Query: 235 ---IEKAQKLVSEGMEKE----------KYMPIIWEPFLVEGVEVVDIACGFDHSLVLGR 281
              ++K   L + G   E          K  P+   P    G +V  ++ G  H+++L +
Sbjct: 619 TMILKKDGTLWATGSNGEAQLGVDDNLNKNTPV---PVSSMGNQVAAVSAGETHTMILKK 675

Query: 282 NGVLLSCGSNVYGQLGREKQDMGM-----FPV-----DINFHPVSISSGLGHSLAI 327
           +G L + G N YG+LG     +G       PV     D N    ++S+G  H++ +
Sbjct: 676 DGTLWATGYNGYGELGLGSSSLGTNISTPVPVPSMNTDPNNPVAAVSAGKLHTMIV 731



 Score = 71.6 bits (174), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 72/258 (27%), Positives = 124/258 (48%), Gaps = 36/258 (13%)

Query: 64  SDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGL--DQVNV 121
           +DV +VS G  H++ +  +G +WA G N + QLG G    R+T   P  V  +  D  N 
Sbjct: 552 TDVAAVSVGGGHTMILKKDGTLWATGYNYDGQLGVGDYNDRST---PVPVPSMNTDPNNP 608

Query: 122 CAAFASGVVSSAI-GDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFG 180
             A + G   + I   DG+LW  G +   QLG+  ++ +   P  V ++ G ++  VS G
Sbjct: 609 VVAVSVGFSHTMILKKDGTLWATGSNGEAQLGVDDNLNKN-TPVPVSSM-GNQVAAVSAG 666

Query: 181 WGHALAQTEDGKLFGWGYSADGRIG----NLGKALESSPL-------DSNIDRSSESDQE 229
             H +   +DG L+  GY+  G +G    +LG  + S+P+       D N   ++ S  +
Sbjct: 667 ETHTMILKKDGTLWATGYNGYGELGLGSSSLGTNI-STPVPVPSMNTDPNNPVAAVSAGK 725

Query: 230 ISSSTIEKAQKL----------VSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVL 279
           + +  ++K   L          + +G   ++  P+     +   VE V  A G+ H+++L
Sbjct: 726 LHTMIVKKDGTLWATGLNDSGQLGDGDNTDRSTPVQ----VSSNVEAV-FAGGY-HTMIL 779

Query: 280 GRNGVLLSCGSNVYGQLG 297
            ++G L + G+N  GQLG
Sbjct: 780 KKDGTLWATGNNWAGQLG 797



 Score = 62.0 bits (149), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 49/133 (36%), Positives = 68/133 (51%), Gaps = 14/133 (10%)

Query: 38  GALGLPTSLTGVGGDAYEPTRVPGLPSD----VTSVSAGHYHSLAVTNNGAVWAWGRNNE 93
           G LGL +S   +G +   P  VP + +D    V +VSAG  H++ V  +G +WA G N+ 
Sbjct: 688 GELGLGSS--SLGTNISTPVPVPSMNTDPNNPVAAVSAGKLHTMIVKKDGTLWATGLNDS 745

Query: 94  VQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGL 153
            QLG G    R+T   P +V      NV A FA G  +  +  DG+LW  G +  GQLG+
Sbjct: 746 GQLGDGDNTDRST---PVQVSS----NVEAVFAGGYHTMILKKDGTLWATGNNWAGQLGV 798

Query: 154 GKDITEAIVPSRV 166
             D T    P +V
Sbjct: 799 -SDNTNRSTPEQV 810



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 49/163 (30%), Positives = 78/163 (47%), Gaps = 8/163 (4%)

Query: 56  PTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEG 115
           P  V  + + V +VSAG  H++ +  +G +WA G N   +LG G+       + P  V  
Sbjct: 650 PVPVSSMGNQVAAVSAGETHTMILKKDGTLWATGYNGYGELGLGSSSLGTNISTPVPVPS 709

Query: 116 L--DQVNVCAAFASGVVSSAI-GDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGE 172
           +  D  N  AA ++G + + I   DG+LW  G +  GQLG G D T+   P +V +    
Sbjct: 710 MNTDPNNPVAAVSAGKLHTMIVKKDGTLWATGLNDSGQLGDG-DNTDRSTPVQVSS---- 764

Query: 173 KIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSP 215
            +  V  G  H +   +DG L+  G +  G++G       S+P
Sbjct: 765 NVEAVFAGGYHTMILKKDGTLWATGNNWAGQLGVSDNTNRSTP 807


>gi|325181521|emb|CCA15971.1| conserved hypothetical protein [Albugo laibachii Nc14]
          Length = 6906

 Score = 95.1 bits (235), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 84/311 (27%), Positives = 143/311 (45%), Gaps = 46/311 (14%)

Query: 29   VVSFGDGSQGALGLPTS-LTGVGG---DAYEPTRVP---GLPSDVTSVSAGHYHSLAVTN 81
            VV   DG+    GL  S   G+G        P+ +P   G+P  + + S G  H LA+++
Sbjct: 3179 VVLMKDGAVFTCGLNKSGQCGIGNFDERLIVPSPIPALSGIPITMVAASNGCEHMLAISH 3238

Query: 82   NGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGL-DQVNVCAAFASGVVSSAIGDDGSL 140
            +GAV++WG N+  QLG G   S++  + P+ +E L ++  +  A  S   S+ + ++G L
Sbjct: 3239 DGAVYSWGYNDRGQLGLGTTVSKS--HTPRVIESLREKYFITFAAVSYHHSAVVSNNGDL 3296

Query: 141  WVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSA 200
              +G +  GQLGL         P  VE L+ +K+ +V+ G  H +A  +DG ++ +G + 
Sbjct: 3297 LTFGMNDSGQLGLDH-TQHQHTPQLVETLSSQKVGRVACGLYHTVAIVDDGDVYSFGKNE 3355

Query: 201  DGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFL 260
             G++G                        +S +   K   LV       K  P    P L
Sbjct: 3356 YGQLG------------------------LSHTQNTKVPMLV-------KIPPAPRTPML 3384

Query: 261  VEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLG---REKQDMGMF-PVDINFHPVS 316
                + V + CG+ H++ +   G +++ G N YGQLG   +E + +  F P+ +      
Sbjct: 3385 DAVNKAVQVYCGYYHTVTILECGKVVTWGRNDYGQLGIGSKEHKSIAQFVPLPLTSRVKR 3444

Query: 317  ISSGLGHSLAI 327
             S G  H+L +
Sbjct: 3445 ASCGCYHTLLL 3455



 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 80/304 (26%), Positives = 126/304 (41%), Gaps = 51/304 (16%)

Query: 85   VWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWG 144
            +++ G+NN  +L  G        N  +R       ++ +      V   +  DG+++  G
Sbjct: 3135 IFSCGQNNYGELCLGHCNPT---NKLERASFFSYKSIQSIAGGNEVLVVLMKDGAVFTCG 3191

Query: 145  KSKRGQLGLGKDITEAIVPSRVEALAGEKIVKV--SFGWGHALAQTEDGKLFGWGYSADG 202
             +K GQ G+G      IVPS + AL+G  I  V  S G  H LA + DG ++ WGY+  G
Sbjct: 3192 LNKSGQCGIGNFDERLIVPSPIPALSGIPITMVAASNGCEHMLAISHDGAVYSWGYNDRG 3251

Query: 203  RIGNLGKALESSPLDSNIDRSSESDQEI-----------SSSTIEKAQKLVSEGMEKE-- 249
            ++G LG  +  S    +  R  ES +E             S+ +     L++ GM     
Sbjct: 3252 QLG-LGTTVSKS----HTPRVIESLREKYFITFAAVSYHHSAVVSNNGDLLTFGMNDSGQ 3306

Query: 250  ---KYMPIIWEPFLVEGV---EVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDM 303
                +      P LVE +   +V  +ACG  H++ +  +G + S G N YGQLG      
Sbjct: 3307 LGLDHTQHQHTPQLVETLSSQKVGRVACGLYHTVAIVDDGDVYSFGKNEYGQLGLSHTQN 3366

Query: 304  GMFPVDINFHP-------------VSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRS 350
               P+ +   P             V +  G  H++ I E            +V+WG N  
Sbjct: 3367 TKVPMLVKIPPAPRTPMLDAVNKAVQVYCGYYHTVTILE---------CGKVVTWGRNDY 3417

Query: 351  SQLG 354
             QLG
Sbjct: 3418 GQLG 3421



 Score = 72.0 bits (175), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 95/401 (23%), Positives = 158/401 (39%), Gaps = 60/401 (14%)

Query: 3   LLKSVVHNHVNVLTSR----------IFMRSASGTAVVSFGDGSQGALGLPTSLTGVGGD 52
           LLK     HVN+  S           ++ +  S   + S G  S G LGL        GD
Sbjct: 314 LLKQSPDEHVNISPSLSKLSALREQPMYGKCESFGELYSCGQNSYGELGL--------GD 365

Query: 53  AYEPTRVPGLP----SDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWN 108
             E  ++  +P      +  V +G+     +T++G V   G N   Q G G  + R    
Sbjct: 366 DIERHQLTSVPLCGWDHIRQVVSGNEILAILTSDGVVLTCGLNKSGQCGHGNFDERVMLL 425

Query: 109 DP------KRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIV 162
            P       RV+ ++  N C          AI D G  + WG + RGQLG     T+  +
Sbjct: 426 RPIQALRSHRVKYINASNGCEHLI------AITDTGLAYSWGYNDRGQLGHENVGTKLYL 479

Query: 163 PSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSP------L 216
           P  +E++  +K+   +  + H+   +  G+L+ +G +  G++G      +S+P      L
Sbjct: 480 PKLIESIKEKKMKSAAVSYHHSALVSVSGELYTFGMNDCGQLGLDHTQHQSTPQLVKALL 539

Query: 217 DSNIDRSSESDQEISSSTI--------EKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVD 268
             ++   S     +   TI        +     +  G  K+  +P      ++    V  
Sbjct: 540 GHHVSMVSCGLYHMVLCTISGEVFTCGKNDHGQLGLGHNKQVKVPT---QVVLPNELVCF 596

Query: 269 IACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFHPVSISSGLGHSLAIC 328
           +ACG+ H+  +   G+  S G N YGQLG   +     P+      ++ISS      A C
Sbjct: 597 VACGYYHATAITSTGLTYSFGRNDYGQLGIGSKIHQNIPI-----ALTISSNTRMVHAAC 651

Query: 329 EVRSSNVTGGARGIVSWGWNRSSQLGRMGPDN----VPLVV 365
               + +   +  +  +G N   QLG  G  +    VPL V
Sbjct: 652 GCYHTLLMSDSGQVFVFGRNNKGQLGNRGNTDSLLPVPLKV 692



 Score = 58.5 bits (140), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 47/166 (28%), Positives = 90/166 (54%), Gaps = 15/166 (9%)

Query: 2   RLLKSVVHNHVNVLTSRIF---MRSASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTR 58
           +L+K+++ +HV++++  ++   + + SG  V + G    G LGL     G       PT+
Sbjct: 533 QLVKALLGHHVSMVSCGLYHMVLCTISG-EVFTCGKNDHGQLGL-----GHNKQVKVPTQ 586

Query: 59  VPGLPSD-VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLD 117
           V  LP++ V  V+ G+YH+ A+T+ G  +++GRN+  QLG G   S+   N P  +    
Sbjct: 587 V-VLPNELVCFVACGYYHATAITSTGLTYSFGRNDYGQLGIG---SKIHQNIPIALTISS 642

Query: 118 QVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVP 163
              +  A      +  + D G ++V+G++ +GQLG  +  T++++P
Sbjct: 643 NTRMVHAACGCYHTLLMSDSGQVFVFGRNNKGQLG-NRGNTDSLLP 687



 Score = 44.7 bits (104), Expect = 0.083,   Method: Compositional matrix adjust.
 Identities = 39/132 (29%), Positives = 60/132 (45%), Gaps = 10/132 (7%)

Query: 29   VVSFGDGSQGALGLP-TSLTGVGGDAYEPT--RVPGLPS--DVTSVSAGHYHSLAVTNNG 83
            V SFG    G LGL  T  T V      P   R P L +      V  G+YH++ +   G
Sbjct: 3348 VYSFGKNEYGQLGLSHTQNTKVPMLVKIPPAPRTPMLDAVNKAVQVYCGYYHTVTILECG 3407

Query: 84   AVWAWGRNNEVQLGRGALESRATWND-PKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWV 142
             V  WGRN+  QLG G+ E ++     P  +    +   C  + + ++      +G   V
Sbjct: 3408 KVVTWGRNDYGQLGIGSKEHKSIAQFVPLPLTSRVKRASCGCYHTLLLLV----NGRPMV 3463

Query: 143  WGKSKRGQLGLG 154
            +G++ +GQLG+ 
Sbjct: 3464 FGRNNKGQLGVA 3475


>gi|330798916|ref|XP_003287495.1| hypothetical protein DICPUDRAFT_151599 [Dictyostelium purpureum]
 gi|325082514|gb|EGC35994.1| hypothetical protein DICPUDRAFT_151599 [Dictyostelium purpureum]
          Length = 1935

 Score = 95.1 bits (235), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 85/321 (26%), Positives = 139/321 (43%), Gaps = 50/321 (15%)

Query: 55   EPTRVPGLP----SDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDP 110
            E  R P  P         VS G  H   +T++G ++ WG N   QLG G LE   T + P
Sbjct: 1109 ELKRFPMAPLKNEKKAIKVSCGWDHIAVITDDGELYTWGSNQSGQLGHG-LEVNKTLSLP 1167

Query: 111  KRVEGL-DQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEAL 169
            KRV+    +  +      G  + A+  +  ++ WG  K GQLG G        P  +E L
Sbjct: 1168 KRVDFFRGKSPIFMVECGGEHTIAVDSNYFVYSWGSDKFGQLGHGTKAVNQSRPKVIEEL 1227

Query: 170  AGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQE 229
             G+KI  ++ G+ H +   + G+LF +GY   G++G    +  S  + + I        E
Sbjct: 1228 TGQKIQAIAAGFAHNIVLKKSGELFSFGYGDFGQLGT--GSFHSKNIPTRI--------E 1277

Query: 230  ISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCG 289
            I++         +  G++              +G ++  IACGF HS++   NG + S G
Sbjct: 1278 INA---------IMGGLQHH------------DGGKITQIACGFGHSVICSENGEVYSWG 1316

Query: 290  SNVYGQLGREKQDMGMFP--VDINFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGW 347
                GQLG +  +    P  ++       IS G  H++A  ++++         + SWG 
Sbjct: 1317 LGKQGQLGHKVFENISKPRLIETLRGVTKISCGHFHTVATTDLKN---------VYSWGS 1367

Query: 348  NRSSQLGRMG--PDNVPLVVE 366
                +LG      ++VP VV+
Sbjct: 1368 GEHMKLGHSSDKDESVPKVVD 1388



 Score = 69.3 bits (168), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 81/319 (25%), Positives = 123/319 (38%), Gaps = 87/319 (27%)

Query: 31   SFGDGSQGALGLPTSLTGVGGDAYEPTRVP------GLP----SDVTSVSAGHYHSLAVT 80
            SFG G  G LG     TG       PTR+       GL       +T ++ G  HS+  +
Sbjct: 1253 SFGYGDFGQLG-----TGSFHSKNIPTRIEINAIMGGLQHHDGGKITQIACGFGHSVICS 1307

Query: 81   NNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVN--VCAAFASGVVSSAIGDDG 138
             NG V++WG   + QLG    E+ +    P+ +E L  V    C  F     + A  D  
Sbjct: 1308 ENGEVYSWGLGKQGQLGHKVFENISK---PRLIETLRGVTKISCGHFH----TVATTDLK 1360

Query: 139  SLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQT---------- 188
            +++ WG  +  +LG   D  E+ VP  V+    + + KV  G  H +  T          
Sbjct: 1361 NVYSWGSGEHMKLGHSSDKDES-VPKVVDFFIQKNVSKVVCGQNHTMTITFPDDLNNSNQ 1419

Query: 189  --ED-----GK----LFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEK 237
              ED     GK    ++ WG +  G++G LG  L+S   D  I                 
Sbjct: 1420 DDEDEENMNGKSSSPIYAWGSAEHGKLG-LGGDLKSPFFDKPI----------------- 1461

Query: 238  AQKLVSEGMEKEKYMPIIWEPFLVEGV---EVVDIACGFDHSLVLGRNGVLLSCGSNVYG 294
                                P  ++GV    ++DI+CG D S ++  N  +   G   +G
Sbjct: 1462 --------------------PTAIKGVNSLNLIDISCGSDFSAMITSNNAIYVWGCGRFG 1501

Query: 295  QLGREKQDMGMFPVDINFH 313
            Q+G  K D    P  I+ +
Sbjct: 1502 QIGNGKNDDVWVPTRISLN 1520



 Score = 64.7 bits (156), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 52/203 (25%), Positives = 91/203 (44%), Gaps = 34/203 (16%)

Query: 29   VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAW 88
            V S+G G QG LG       V  +  +P  +  L   VT +S GH+H++A T+   V++W
Sbjct: 1312 VYSWGLGKQGQLG-----HKVFENISKPRLIETL-RGVTKISCGHFHTVATTDLKNVYSW 1365

Query: 89   GRNNEVQLGRGALESRATWNDPKRVEGLDQVN----VCA-------AFASGVVSSAIGDD 137
            G    ++LG  + +  +    PK V+   Q N    VC         F   + +S   D+
Sbjct: 1366 GSGEHMKLGHSSDKDESV---PKVVDFFIQKNVSKVVCGQNHTMTITFPDDLNNSNQDDE 1422

Query: 138  ----------GSLWVWGKSKRGQLGLGKDITEAI----VPSRVEALAGEKIVKVSFGWGH 183
                        ++ WG ++ G+LGLG D+        +P+ ++ +    ++ +S G   
Sbjct: 1423 DEENMNGKSSSPIYAWGSAEHGKLGLGGDLKSPFFDKPIPTAIKGVNSLNLIDISCGSDF 1482

Query: 184  ALAQTEDGKLFGWGYSADGRIGN 206
            +   T +  ++ WG    G+IGN
Sbjct: 1483 SAMITSNNAIYVWGCGRFGQIGN 1505



 Score = 42.0 bits (97), Expect = 0.49,   Method: Composition-based stats.
 Identities = 27/98 (27%), Positives = 45/98 (45%), Gaps = 6/98 (6%)

Query: 21   MRSASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPS-DVTSVSAGHYHSLAV 79
            M   S + + ++G    G LGL   L     D   PT + G+ S ++  +S G   S  +
Sbjct: 1427 MNGKSSSPIYAWGSAEHGKLGLGGDLKSPFFDKPIPTAIKGVNSLNLIDISCGSDFSAMI 1486

Query: 80   TNNGAVWAWGRNNEVQLGRGA-----LESRATWNDPKR 112
            T+N A++ WG     Q+G G      + +R + ND  +
Sbjct: 1487 TSNNAIYVWGCGRFGQIGNGKNDDVWVPTRISLNDSTK 1524



 Score = 40.8 bits (94), Expect = 1.1,   Method: Composition-based stats.
 Identities = 36/118 (30%), Positives = 56/118 (47%), Gaps = 21/118 (17%)

Query: 265  EVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGR--EKQDMGMFPVDINF----HPV-SI 317
            + + ++CG+DH  V+  +G L + GSN  GQLG   E       P  ++F     P+  +
Sbjct: 1123 KAIKVSCGWDHIAVITDDGELYTWGSNQSGQLGHGLEVNKTLSLPKRVDFFRGKSPIFMV 1182

Query: 318  SSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPDNV----PLVVEGLEGE 371
              G  H++A+     SN       + SWG ++  QLG  G   V    P V+E L G+
Sbjct: 1183 ECGGEHTIAV----DSNYF-----VYSWGSDKFGQLGH-GTKAVNQSRPKVIEELTGQ 1230


>gi|195399111|ref|XP_002058164.1| GJ15642 [Drosophila virilis]
 gi|194150588|gb|EDW66272.1| GJ15642 [Drosophila virilis]
          Length = 5062

 Score = 95.1 bits (235), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 87/285 (30%), Positives = 129/285 (45%), Gaps = 57/285 (20%)

Query: 19   IFMRSASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVT---SVSAGHYH 75
            +F+ S  G  V + G+G+ G LGL     GV  +   P ++P L   V    +V +G  H
Sbjct: 3090 LFVVSQDGK-VYACGEGTNGRLGL-----GVTHNVPLPHQLPVLHQYVVKKVAVHSGGKH 3143

Query: 76   SLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIG 135
            +LA+T +G V++WG   + +LG G   +R+T + P+ VE L    +         S+AI 
Sbjct: 3144 ALALTLDGKVFSWGEGEDGKLGHG---NRSTLDKPRLVEALRAKKIRDIACGSSHSAAIS 3200

Query: 136  DDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGW--GHALAQTEDGKL 193
              G L+ WG  + G+LG G + T+ + P  V AL G ++++V+ G      LA TEDG +
Sbjct: 3201 SQGELYTWGLGEYGRLGHGDNATQ-LKPKLVTALHGRRVIQVACGSRDAQTLALTEDGAV 3259

Query: 194  FGWGYSADGRIGNLGK-ALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYM 252
            F WG   DG  G LG+   E S     I+R S                            
Sbjct: 3260 FSWG---DGDFGKLGRGGSEGSATPHEIERLS---------------------------- 3288

Query: 253  PIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLG 297
                      G+ V+ I CG   SL L R G + + G   Y +LG
Sbjct: 3289 ----------GIGVIQIECGAQFSLALTRAGEVWTWGKGDYYRLG 3323



 Score = 80.5 bits (197), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 83/315 (26%), Positives = 139/315 (44%), Gaps = 67/315 (21%)

Query: 68   SVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFAS 127
            +V++G  H LA+T +G V+AWG   + +LG G   +R +++ PK +E L+ ++V      
Sbjct: 4290 AVNSGGKHCLALTTDGEVYAWGEGEDGKLGHG---NRMSYDRPKLLEHLNGMSVADIACG 4346

Query: 128  GVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHA--L 185
               S+AI   G +  WGK + G+LG G D  + + P  VEAL G + + ++ G G A  L
Sbjct: 4347 SAHSAAITASGHVLTWGKGRYGRLGHG-DSEDQLRPKLVEALLGYRAIDIACGSGDAQTL 4405

Query: 186  AQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEG 245
              T+D  ++ WG   DG  G LG+                                 S+G
Sbjct: 4406 CITDDDNVWSWG---DGDYGKLGRG-------------------------------GSDG 4431

Query: 246  MEKEKYMPIIWEPFLVE---GVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQD 302
             +          P+ +E   G+ V+ + CG   S+ L ++G + + G   + +LG    D
Sbjct: 4432 CKL---------PYKIESLAGLGVIKVECGSQFSVALTKSGAVYTWGKGDFHRLGHGSVD 4482

Query: 303  MGMFPVDINF----HPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQL--GRM 356
                P  +        +SI++G  H +A  +         A  + +WG N   QL  G +
Sbjct: 4483 HVRRPKKVAALQGKKIISIATGSLHCVACSD---------AGEVYTWGDNDEGQLGDGTV 4533

Query: 357  GPDNVPLVVEGLEGE 371
                 P +V  L+G+
Sbjct: 4534 TAIQRPRLVAALQGK 4548



 Score = 70.9 bits (172), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 56/181 (30%), Positives = 90/181 (49%), Gaps = 16/181 (8%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPS----DVTSVSAGHYHSLAVTNNGA 84
           + ++G G+ G LG      G   D   P  V  L      DV ++ +G  H+L +T  G 
Sbjct: 689 LYTWGRGTYGRLG-----HGNSDDQCMPAMVMALKDHQVLDV-ALGSGDAHTLCLTRGGL 742

Query: 85  VWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWG 144
           V+AWG  +  +LG G+  S      P  +E L +V     FA    S A+  +G L+ WG
Sbjct: 743 VYAWGDGDYGKLGNGSCNSSL---QPLLIECLPRVQ--RVFAGSQFSLALTCEGQLYSWG 797

Query: 145 K-SKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGR 203
           K S  G   + +++    VP  + +L  ++IV V+ G  H LA + +G++FGWG + + +
Sbjct: 798 KASCLGHQLVERNVQGCSVPRLITSLQHKRIVHVAVGVAHCLALSSNGEIFGWGRNDNQQ 857

Query: 204 I 204
           I
Sbjct: 858 I 858



 Score = 70.9 bits (172), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 44/133 (33%), Positives = 74/133 (55%), Gaps = 6/133 (4%)

Query: 75   HSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNV-CAAFASGVVSSA 133
             +LA+T +GAV++WG  +  +LGRG  E  AT ++ +R+ G+  + + C A  S  ++ A
Sbjct: 3249 QTLALTEDGAVFSWGDGDFGKLGRGGSEGSATPHEIERLSGIGVIQIECGAQFSLALTRA 3308

Query: 134  IGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKL 193
                G +W WGK    +LG G D      P  +  L G +++ V+ G  H LA T+ G++
Sbjct: 3309 ----GEVWTWGKGDYYRLGHGGD-QHVRKPQPIAGLRGRRVIHVAVGALHCLAVTDAGQV 3363

Query: 194  FGWGYSADGRIGN 206
            + WG +  G+ G+
Sbjct: 3364 YAWGDNDHGQQGS 3376



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 54/188 (28%), Positives = 94/188 (50%), Gaps = 15/188 (7%)

Query: 23   SASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGL----PSDVTSVSAGHYHSLA 78
            +ASG  V+++G G  G LG      G   D   P  V  L      D+ +  +G   +L 
Sbjct: 4354 TASGH-VLTWGKGRYGRLG-----HGDSEDQLRPKLVEALLGYRAIDI-ACGSGDAQTLC 4406

Query: 79   VTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDG 138
            +T++  VW+WG  +  +LGRG  +       P ++E L  + V         S A+   G
Sbjct: 4407 ITDDDNVWSWGDGDYGKLGRGGSDG---CKLPYKIESLAGLGVIKVECGSQFSVALTKSG 4463

Query: 139  SLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGY 198
            +++ WGK    +LG G  +     P +V AL G+KI+ ++ G  H +A ++ G+++ WG 
Sbjct: 4464 AVYTWGKGDFHRLGHG-SVDHVRRPKKVAALQGKKIISIATGSLHCVACSDAGEVYTWGD 4522

Query: 199  SADGRIGN 206
            + +G++G+
Sbjct: 4523 NDEGQLGD 4530



 Score = 68.2 bits (165), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 52/157 (33%), Positives = 75/157 (47%), Gaps = 10/157 (6%)

Query: 31   SFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPS-DVTSVSAGHYHSLAVTNNGAVWAWG 89
            S+GDG  G LG      G       P ++  L    V  V  G   S+A+T +GAV+ WG
Sbjct: 4415 SWGDGDYGKLG-----RGGSDGCKLPYKIESLAGLGVIKVECGSQFSVALTKSGAVYTWG 4469

Query: 90   RNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRG 149
            + +  +LG G+++       PK+V  L    + +     +   A  D G ++ WG +  G
Sbjct: 4470 KGDFHRLGHGSVDH---VRRPKKVAALQGKKIISIATGSLHCVACSDAGEVYTWGDNDEG 4526

Query: 150  QLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALA 186
            QLG G  +T    P  V AL G+ IVKV+ G  H LA
Sbjct: 4527 QLGDGT-VTAIQRPRLVAALQGKHIVKVTCGSAHTLA 4562



 Score = 65.1 bits (157), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 64/240 (26%), Positives = 105/240 (43%), Gaps = 27/240 (11%)

Query: 75  HSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAI 134
           H LAV +N   ++WG  +  +LG G   +R     P ++E L +  V + +     S+AI
Sbjct: 628 HFLAVDSNHNAYSWGVGDSRRLGHGDCHAREL---PTKIESLVR-RVQSVYCGCSYSAAI 683

Query: 135 GDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWG--HALAQTEDGK 192
              G+L+ WG+   G+LG G    +  +P+ V AL   +++ V+ G G  H L  T  G 
Sbjct: 684 TLRGNLYTWGRGTYGRLGHGNS-DDQCMPAMVMALKDHQVLDVALGSGDAHTLCLTRGGL 742

Query: 193 LFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEK---- 248
           ++ WG   DG  G LG    +S L   +       Q + + + + +  L  EG       
Sbjct: 743 VYAWG---DGDYGKLGNGSCNSSLQPLLIECLPRVQRVFAGS-QFSLALTCEGQLYSWGK 798

Query: 249 ---------EKYMPIIWEPFLVEGVE---VVDIACGFDHSLVLGRNGVLLSCGSNVYGQL 296
                    E+ +     P L+  ++   +V +A G  H L L  NG +   G N   Q+
Sbjct: 799 ASCLGHQLVERNVQGCSVPRLITSLQHKRIVHVAVGVAHCLALSSNGEIFGWGRNDNQQI 858



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 79/308 (25%), Positives = 124/308 (40%), Gaps = 55/308 (17%)

Query: 69   VSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQ--VNVCAAFA 126
            ++ G      V+ +G V+A G     +LG G   +      P ++  L Q  V   A  +
Sbjct: 3083 IAGGSKSLFVVSQDGKVYACGEGTNGRLGLGVTHNVPL---PHQLPVLHQYVVKKVAVHS 3139

Query: 127  SGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALA 186
             G  + A+  DG ++ WG+ + G+LG G   T    P  VEAL  +KI  ++ G  H+ A
Sbjct: 3140 GGKHALALTLDGKVFSWGEGEDGKLGHGNRST-LDKPRLVEALRAKKIRDIACGSSHSAA 3198

Query: 187  QTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGM 246
             +  G+L+ WG    GR+G+   A +  P                        KLV+   
Sbjct: 3199 ISSQGELYTWGLGEYGRLGHGDNATQLKP------------------------KLVTA-- 3232

Query: 247  EKEKYMPIIWEPFLVEGVEVVDIACGFD--HSLVLGRNGVLLSCGSNVYGQLGREKQDMG 304
                          + G  V+ +ACG     +L L  +G + S G   +G+LGR   +  
Sbjct: 3233 --------------LHGRRVIQVACGSRDAQTLALTEDGAVFSWGDGDFGKLGRGGSEGS 3278

Query: 305  MFPVDINFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPDNV--P 362
              P     H +   SG+G     C  + S     A  + +WG     +LG  G  +V  P
Sbjct: 3279 ATP-----HEIERLSGIGVIQIECGAQFSLALTRAGEVWTWGKGDYYRLGHGGDQHVRKP 3333

Query: 363  LVVEGLEG 370
              + GL G
Sbjct: 3334 QPIAGLRG 3341



 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 77/294 (26%), Positives = 117/294 (39%), Gaps = 59/294 (20%)

Query: 85   VWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWG 144
            ++ WG N+  QLG G   SR     P   E L  +             A+  DG L+  G
Sbjct: 4201 IYGWGHNHRGQLG-GLEGSRI--KTPTPCEALSLLRPIQLAGGEQSLFAVTPDGKLFATG 4257

Query: 145  KSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWG--HALAQTEDGKLFGWGYSADG 202
                G+LG+G   + AI P+ + +L    + KV+   G  H LA T DG+++ WG   DG
Sbjct: 4258 YGSGGRLGVGGSDSWAI-PTLLGSLQHVFVKKVAVNSGGKHCLALTTDGEVYAWGEGEDG 4316

Query: 203  RIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVE 262
            ++G+  +     P                        KL+                  + 
Sbjct: 4317 KLGHGNRMSYDRP------------------------KLLEH----------------LN 4336

Query: 263  GVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDIN----FHPVSIS 318
            G+ V DIACG  HS  +  +G +L+ G   YG+LG    +  + P  +     +  + I+
Sbjct: 4337 GMSVADIACGSAHSAAITASGHVLTWGKGRYGRLGHGDSEDQLRPKLVEALLGYRAIDIA 4396

Query: 319  SGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPD--NVPLVVEGLEG 370
             G G +  +C     NV        SWG     +LGR G D   +P  +E L G
Sbjct: 4397 CGSGDAQTLCITDDDNVW-------SWGDGDYGKLGRGGSDGCKLPYKIESLAG 4443



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 79/309 (25%), Positives = 122/309 (39%), Gaps = 55/309 (17%)

Query: 69   VSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNV--CAAFA 126
            ++ G     AVT +G ++A G  +  +LG G  +S   W  P  +  L  V V   A  +
Sbjct: 4237 LAGGEQSLFAVTPDGKLFATGYGSGGRLGVGGSDS---WAIPTLLGSLQHVFVKKVAVNS 4293

Query: 127  SGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALA 186
             G    A+  DG ++ WG+ + G+LG G  ++    P  +E L G  +  ++ G  H+ A
Sbjct: 4294 GGKHCLALTTDGEVYAWGEGEDGKLGHGNRMSYD-RPKLLEHLNGMSVADIACGSAHSAA 4352

Query: 187  QTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGM 246
             T  G +  WG    GR G LG                                    G 
Sbjct: 4353 ITASGHVLTWG---KGRYGRLG-----------------------------------HGD 4374

Query: 247  EKEKYMPIIWEPFLVEGVEVVDIACGF--DHSLVLGRNGVLLSCGSNVYGQLGREKQDMG 304
             +++  P + E  L  G   +DIACG     +L +  +  + S G   YG+LGR   D  
Sbjct: 4375 SEDQLRPKLVEALL--GYRAIDIACGSGDAQTLCITDDDNVWSWGDGDYGKLGRGGSDGC 4432

Query: 305  MFPVDINFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPDNV--P 362
              P  I        +GLG     C  + S     +  + +WG     +LG    D+V  P
Sbjct: 4433 KLPYKIES-----LAGLGVIKVECGSQFSVALTKSGAVYTWGKGDFHRLGHGSVDHVRRP 4487

Query: 363  LVVEGLEGE 371
              V  L+G+
Sbjct: 4488 KKVAALQGK 4496



 Score = 40.8 bits (94), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 38/112 (33%), Positives = 50/112 (44%), Gaps = 18/112 (16%)

Query: 25   SGTAVVSFGDGSQGALGLPTS------------LTGVGGDAY--EPTRVPGLP-SDVTSV 69
            SG  V+    G+Q +L L  +              G GGD +  +P  + GL    V  V
Sbjct: 3288 SGIGVIQIECGAQFSLALTRAGEVWTWGKGDYYRLGHGGDQHVRKPQPIAGLRGRRVIHV 3347

Query: 70   SAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNV 121
            + G  H LAVT+ G V+AWG N+  Q G G   +      P  V GLD V V
Sbjct: 3348 AVGALHCLAVTDAGQVYAWGDNDHGQQGSG---NTFVNKKPALVIGLDAVFV 3396



 Score = 39.7 bits (91), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 36/64 (56%), Gaps = 1/64 (1%)

Query: 135  GDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLF 194
            G   +++ WG + RGQLG G + +    P+  EAL+  + ++++ G     A T DGKLF
Sbjct: 4196 GGASTIYGWGHNHRGQLG-GLEGSRIKTPTPCEALSLLRPIQLAGGEQSLFAVTPDGKLF 4254

Query: 195  GWGY 198
              GY
Sbjct: 4255 ATGY 4258


>gi|431906266|gb|ELK10463.1| Protein RCC2, partial [Pteropus alecto]
          Length = 427

 Score = 95.1 bits (235), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 82/293 (27%), Positives = 130/293 (44%), Gaps = 35/293 (11%)

Query: 75  HSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAI 134
           HSL +T  G +W+WGRN + QLG G  +       P+ +EGL    + +A      + A+
Sbjct: 66  HSLLITTEGKLWSWGRNEKGQLGHGDTKRVEA---PRLIEGLSHEVIVSAACGRNHTLAL 122

Query: 135 GDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLF 194
            + GS++ +G++K GQLGLG        P+++    G+ I KV+ G   ++     G L+
Sbjct: 123 TETGSVFAFGENKMGQLGLGNQTDAVPSPAQI-MYNGQPITKVACGAEFSMIMDCKGNLY 181

Query: 195 GWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPI 254
            +G    G++G+            N D    +  +      E   + V+  +EK K   I
Sbjct: 182 SFGCPEYGQLGH------------NSDGKFIARAQRIEYDCELVPRRVAIFIEKTKDGQI 229

Query: 255 IWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFHP 314
           +  P +V    V D+ACG +H+LVL     + S G   YG+LG  +Q   M P  +    
Sbjct: 230 LPVPNVV----VRDVACGANHTLVLDSQKRVFSWGFGGYGRLGHAEQKDEMVPRLVKLFD 285

Query: 315 V------SISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPDNV 361
                   I +G   S A+ EV          G+  WG   +S+   M P  V
Sbjct: 286 FPGRGASQIYAGYTCSFAVSEV---------GGLFFWGATNTSRESTMYPKAV 329



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 56/186 (30%), Positives = 80/186 (43%), Gaps = 31/186 (16%)

Query: 56  PTRVPGLPSDV-TSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVE 114
           P  + GL  +V  S + G  H+LA+T  G+V+A+G N   QLG G      T   P   +
Sbjct: 98  PRLIEGLSHEVIVSAACGRNHTLALTETGSVFAFGENKMGQLGLG----NQTDAVPSPAQ 153

Query: 115 GLDQVNVCAAFASGVVSSAIGD-DGSLWVWGKSKRGQLGL---GKDITEA--------IV 162
            +         A G   S I D  G+L+ +G  + GQLG    GK I  A        +V
Sbjct: 154 IMYNGQPITKVACGAEFSMIMDCKGNLYSFGCPEYGQLGHNSDGKFIARAQRIEYDCELV 213

Query: 163 PSRVEALAGEK-------------IVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGK 209
           P RV A+  EK             +  V+ G  H L      ++F WG+   GR+G+  +
Sbjct: 214 PRRV-AIFIEKTKDGQILPVPNVVVRDVACGANHTLVLDSQKRVFSWGFGGYGRLGHAEQ 272

Query: 210 ALESSP 215
             E  P
Sbjct: 273 KDEMVP 278


>gi|198471444|ref|XP_001355626.2| GA11166 [Drosophila pseudoobscura pseudoobscura]
 gi|198145920|gb|EAL32685.2| GA11166 [Drosophila pseudoobscura pseudoobscura]
          Length = 5072

 Score = 95.1 bits (235), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 85/275 (30%), Positives = 124/275 (45%), Gaps = 56/275 (20%)

Query: 29   VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVT---SVSAGHYHSLAVTNNGAV 85
            V + G+G+ G LGL     GV  +   P ++P L   V    +V +G  H+LA+T +G V
Sbjct: 3149 VYACGEGTNGRLGL-----GVTHNVPLPHQLPVLHQYVVKKVAVHSGGKHALALTLDGKV 3203

Query: 86   WAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGK 145
            ++WG   + +LG G   +R T + P+ VE L    +         S+AI   G L+ WG 
Sbjct: 3204 FSWGEGEDGKLGHG---NRTTLDKPRLVETLRSKKIRDVACGSSHSAAISSQGELYTWGL 3260

Query: 146  SKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGW--GHALAQTEDGKLFGWGYSADGR 203
             + G+LG G + T+ + P  V ALAG ++++V+ G      LA TEDG +F WG   DG 
Sbjct: 3261 GEYGRLGHGDNSTQ-LKPKLVAALAGRRVIQVACGSRDAQTLALTEDGAVFSWG---DGD 3316

Query: 204  IGNLGK-ALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVE 262
             G LG+   E S     I+R S                                      
Sbjct: 3317 FGKLGRGGSEGSDTPHEIERLS-------------------------------------- 3338

Query: 263  GVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLG 297
            G+ V+ I CG   SL L R G + + G   Y +LG
Sbjct: 3339 GIGVIQIECGAQFSLALTRAGEVWTWGKGDYYRLG 3373



 Score = 80.1 bits (196), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 83/315 (26%), Positives = 137/315 (43%), Gaps = 67/315 (21%)

Query: 68   SVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFAS 127
            +V++G  H LA+T  G V+AWG   + +LG G   +R +++ PK VE L+ +NV      
Sbjct: 4327 AVNSGGKHCLALTTEGEVYAWGEGEDGKLGHG---NRMSYDRPKLVEHLNGMNVADIACG 4383

Query: 128  GVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHA--L 185
               S+AI   G +  WGK + G+LG G D  + + P  VEAL G + + ++ G G A  L
Sbjct: 4384 SAHSAAITASGHVLTWGKGRYGRLGHG-DSEDQLRPQLVEALLGYRAIDIACGSGDAQTL 4442

Query: 186  AQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEG 245
               +D  ++ WG   DG  G LG+                                 S+G
Sbjct: 4443 CINDDDNVWSWG---DGDYGKLGRG-------------------------------GSDG 4468

Query: 246  MEKEKYMPIIWEPFLVE---GVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQD 302
             +          P+ +E   G+ V+ + CG   S+ L ++G + + G   + +LG    D
Sbjct: 4469 CKL---------PYKIESLAGLGVIKVECGSQFSVALTKSGAVYTWGKGDFHRLGHGSVD 4519

Query: 303  MGMFPVDINF----HPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQL--GRM 356
                P  +        +SI++G  H +A  +         +  + +WG N   QL  G +
Sbjct: 4520 HVRRPKKVAALQGKKIISIATGSLHCVACSD---------SGEVYTWGDNDEGQLGDGTV 4570

Query: 357  GPDNVPLVVEGLEGE 371
                 P +V  L+G+
Sbjct: 4571 TAIQRPRLVAALQGK 4585



 Score = 71.6 bits (174), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 72/266 (27%), Positives = 123/266 (46%), Gaps = 30/266 (11%)

Query: 54  YEPTRVPGLPSDV---TSVSAGHY----HSLAVTNNGAVWAWGRNNEVQLGRGALESRAT 106
           ++P   P L  ++   T VS   +    H +A+  N   ++WG   + +LG G   +RA 
Sbjct: 603 FKPETEPQLLEEIAHETIVSIASHCEGRHFMAIDINRNAYSWGNGEDHRLGHGDTHARAV 662

Query: 107 WNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRV 166
              P ++  LD+  V A F     S+AI   G+L+ WG+    +LG G    + + P+ V
Sbjct: 663 ---PTKITLLDRC-VKAVFCGCSYSAAITCSGNLYTWGRGTYARLGHGNSDDQPL-PTVV 717

Query: 167 EALAGEKIVKVSFGWG--HALAQTEDGKLFGWGYSADGRIGN--LGKALESSPLDS--NI 220
            AL   +I+ V+ G G  H+L  T +G ++ WG +  G++GN  L  ++    ++S   +
Sbjct: 718 MALTEHEIIDVALGSGDAHSLCLTSEGHVYAWGDADYGKLGNGNLNGSMSPVLVESLPKV 777

Query: 221 DRSSESDQEISSSTIE-------KAQKLVSEGMEKEKYMPIIWEPFLVEGVE---VVDIA 270
            R     Q   + T +       KA  L  + +E+      +  P L+ G++   +VD+A
Sbjct: 778 QRVFAGAQFSMALTTDGQLYSWGKASCLGHQLVERSAQWCSV--PRLISGLQHKRIVDVA 835

Query: 271 CGFDHSLVLGRNGVLLSCGSNVYGQL 296
            G  H L L   G +   G N   Q+
Sbjct: 836 VGVAHCLALSSCGEVFGWGRNDSQQI 861



 Score = 69.3 bits (168), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 43/133 (32%), Positives = 73/133 (54%), Gaps = 6/133 (4%)

Query: 75   HSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNV-CAAFASGVVSSA 133
             +LA+T +GAV++WG  +  +LGRG  E   T ++ +R+ G+  + + C A  S  ++ A
Sbjct: 3299 QTLALTEDGAVFSWGDGDFGKLGRGGSEGSDTPHEIERLSGIGVIQIECGAQFSLALTRA 3358

Query: 134  IGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKL 193
                G +W WGK    +LG G D      P  +  L G +++ V+ G  H LA T+ G++
Sbjct: 3359 ----GEVWTWGKGDYYRLGHGGD-QHVRKPQPIAGLRGRRVIHVAVGALHCLAVTDAGQV 3413

Query: 194  FGWGYSADGRIGN 206
            + WG +  G+ G+
Sbjct: 3414 YAWGDNDHGQQGS 3426



 Score = 68.9 bits (167), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 52/157 (33%), Positives = 75/157 (47%), Gaps = 10/157 (6%)

Query: 31   SFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPS-DVTSVSAGHYHSLAVTNNGAVWAWG 89
            S+GDG  G LG      G       P ++  L    V  V  G   S+A+T +GAV+ WG
Sbjct: 4452 SWGDGDYGKLG-----RGGSDGCKLPYKIESLAGLGVIKVECGSQFSVALTKSGAVYTWG 4506

Query: 90   RNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRG 149
            + +  +LG G+++       PK+V  L    + +     +   A  D G ++ WG +  G
Sbjct: 4507 KGDFHRLGHGSVDH---VRRPKKVAALQGKKIISIATGSLHCVACSDSGEVYTWGDNDEG 4563

Query: 150  QLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALA 186
            QLG G  +T    P  V AL G+ IVKV+ G  H LA
Sbjct: 4564 QLGDGT-VTAIQRPRLVAALQGKHIVKVTCGSAHTLA 4599



 Score = 68.6 bits (166), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 53/188 (28%), Positives = 93/188 (49%), Gaps = 15/188 (7%)

Query: 23   SASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGL----PSDVTSVSAGHYHSLA 78
            +ASG  V+++G G  G LG      G   D   P  V  L      D+ +  +G   +L 
Sbjct: 4391 TASGH-VLTWGKGRYGRLG-----HGDSEDQLRPQLVEALLGYRAIDI-ACGSGDAQTLC 4443

Query: 79   VTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDG 138
            + ++  VW+WG  +  +LGRG  +       P ++E L  + V         S A+   G
Sbjct: 4444 INDDDNVWSWGDGDYGKLGRGGSDG---CKLPYKIESLAGLGVIKVECGSQFSVALTKSG 4500

Query: 139  SLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGY 198
            +++ WGK    +LG G  +     P +V AL G+KI+ ++ G  H +A ++ G+++ WG 
Sbjct: 4501 AVYTWGKGDFHRLGHG-SVDHVRRPKKVAALQGKKIISIATGSLHCVACSDSGEVYTWGD 4559

Query: 199  SADGRIGN 206
            + +G++G+
Sbjct: 4560 NDEGQLGD 4567



 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 58/208 (27%), Positives = 98/208 (47%), Gaps = 23/208 (11%)

Query: 2   RLLKSVVHNHVNVLTS----RIFMRSASGTAVVSFGDGSQGALGLPTSLTGVGGDAYE-- 55
           +LL+ + H  +  + S    R FM         S+G+G    LG         GD +   
Sbjct: 610 QLLEEIAHETIVSIASHCEGRHFMAIDINRNAYSWGNGEDHRLG--------HGDTHARA 661

Query: 56  -PTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVE 114
            PT++  L   V +V  G  +S A+T +G ++ WGR    +LG G  + +     P  V 
Sbjct: 662 VPTKITLLDRCVKAVFCGCSYSAAITCSGNLYTWGRGTYARLGHGNSDDQPL---PTVVM 718

Query: 115 GLDQVNVC-AAFASGVVSS-AIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGE 172
            L +  +   A  SG   S  +  +G ++ WG +  G+LG G ++  ++ P  VE+L   
Sbjct: 719 ALTEHEIIDVALGSGDAHSLCLTSEGHVYAWGDADYGKLGNG-NLNGSMSPVLVESLP-- 775

Query: 173 KIVKVSFGWGHALAQTEDGKLFGWGYSA 200
           K+ +V  G   ++A T DG+L+ WG ++
Sbjct: 776 KVQRVFAGAQFSMALTTDGQLYSWGKAS 803



 Score = 62.0 bits (149), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 83/307 (27%), Positives = 136/307 (44%), Gaps = 33/307 (10%)

Query: 85   VWAWGRNNEVQLG--RGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWV 142
            V  WG N++ QLG  +G+     T++  + +  L  +++     S  +   +G +G ++ 
Sbjct: 3097 VMVWGLNDKEQLGGLKGSKVKVPTFS--QTISRLRPIHIAGGSKSLFI---VGQNGKVYA 3151

Query: 143  WGKSKRGQLGLGKDITEAI-VPSRVEALAGEKIVKVSFGWG--HALAQTEDGKLFGWGYS 199
             G+   G+LGLG  +T  + +P ++  L    + KV+   G  HALA T DGK+F WG  
Sbjct: 3152 CGEGTNGRLGLG--VTHNVPLPHQLPVLHQYVVKKVAVHSGGKHALALTLDGKVFSWGEG 3209

Query: 200  ADGRIGNLGKALESSPLDSNIDRSSE-SDQEISSS---TIEKAQKLVSEGMEKEKYM--- 252
             DG++G+  +     P      RS +  D    SS    I    +L + G+ +   +   
Sbjct: 3210 EDGKLGHGNRTTLDKPRLVETLRSKKIRDVACGSSHSAAISSQGELYTWGLGEYGRLGHG 3269

Query: 253  --PIIWEPFLV---EGVEVVDIACGFD--HSLVLGRNGVLLSCGSNVYGQLGREKQDMGM 305
                  +P LV    G  V+ +ACG     +L L  +G + S G   +G+LGR   +   
Sbjct: 3270 DNSTQLKPKLVAALAGRRVIQVACGSRDAQTLALTEDGAVFSWGDGDFGKLGRGGSEGSD 3329

Query: 306  FPVDINFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPDNV--PL 363
             P     H +   SG+G     C  + S     A  + +WG     +LG  G  +V  P 
Sbjct: 3330 TP-----HEIERLSGIGVIQIECGAQFSLALTRAGEVWTWGKGDYYRLGHGGDQHVRKPQ 3384

Query: 364  VVEGLEG 370
             + GL G
Sbjct: 3385 PIAGLRG 3391



 Score = 54.7 bits (130), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 79/309 (25%), Positives = 122/309 (39%), Gaps = 55/309 (17%)

Query: 69   VSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNV--CAAFA 126
            ++ G     AVT +G ++A G  +  +LG G  +S   W  P  +  L  V V   A  +
Sbjct: 4274 LAGGEQSLFAVTPDGKLFATGYGSGGRLGVGGADS---WAIPTLLGSLQHVFVKKVAVNS 4330

Query: 127  SGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALA 186
             G    A+  +G ++ WG+ + G+LG G  ++    P  VE L G  +  ++ G  H+ A
Sbjct: 4331 GGKHCLALTTEGEVYAWGEGEDGKLGHGNRMSYD-RPKLVEHLNGMNVADIACGSAHSAA 4389

Query: 187  QTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGM 246
             T  G +  WG    GR G LG                                    G 
Sbjct: 4390 ITASGHVLTWG---KGRYGRLG-----------------------------------HGD 4411

Query: 247  EKEKYMPIIWEPFLVEGVEVVDIACGF--DHSLVLGRNGVLLSCGSNVYGQLGREKQDMG 304
             +++  P + E  L  G   +DIACG     +L +  +  + S G   YG+LGR   D  
Sbjct: 4412 SEDQLRPQLVEALL--GYRAIDIACGSGDAQTLCINDDDNVWSWGDGDYGKLGRGGSDGC 4469

Query: 305  MFPVDINFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPDNV--P 362
              P  I        +GLG     C  + S     +  + +WG     +LG    D+V  P
Sbjct: 4470 KLPYKIES-----LAGLGVIKVECGSQFSVALTKSGAVYTWGKGDFHRLGHGSVDHVRRP 4524

Query: 363  LVVEGLEGE 371
              V  L+G+
Sbjct: 4525 KKVAALQGK 4533



 Score = 40.4 bits (93), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 24/64 (37%), Positives = 36/64 (56%), Gaps = 1/64 (1%)

Query: 135  GDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLF 194
            G   +++ WG + RGQLG G + +    P+  EAL+  + V+++ G     A T DGKLF
Sbjct: 4233 GGASTIYGWGHNHRGQLG-GLEGSRIKTPTPCEALSLLRPVQLAGGEQSLFAVTPDGKLF 4291

Query: 195  GWGY 198
              GY
Sbjct: 4292 ATGY 4295


>gi|294816128|ref|ZP_06774771.1| BNR repeat domain protein [Streptomyces clavuligerus ATCC 27064]
 gi|326444463|ref|ZP_08219197.1| regulator of chromosome condensation-like protein [Streptomyces
           clavuligerus ATCC 27064]
 gi|294328727|gb|EFG10370.1| BNR repeat domain protein [Streptomyces clavuligerus ATCC 27064]
          Length = 406

 Score = 95.1 bits (235), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 98/349 (28%), Positives = 149/349 (42%), Gaps = 81/349 (23%)

Query: 20  FMRSASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAV 79
           F  +  GT + S+GD + G LG      G   D   P  VPGL   +  V+AG  H+LA+
Sbjct: 92  FALALVGTTLKSWGDNASGQLG-----NGGRADQTVPAVVPGL-QKIKDVAAGGRHALAL 145

Query: 80  TNNGAVWAWGRNNEVQLGRGALESRATWND---PKRVEGLDQVNVCAAFASGVVSSAIGD 136
             +G V++WG N+  QLG     +  T +D   P RV+GL +V   +A      S A+ +
Sbjct: 146 DTDGQVYSWGDNSYGQLG-----NNRTGDDRILPDRVQGLPKVKQVSAGCD--FSLALLE 198

Query: 137 DGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGW 196
            G ++ WG+   GQLG G D   + VP +V  L    IV +  G  HALAQT    +  W
Sbjct: 199 SGEVYSWGRGMYGQLGNG-DYAVSSVPVQVTDLT--NIVSIDAGCHHALAQTNANTVKSW 255

Query: 197 GYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIW 256
           GY+  G++GN                                    S  +   K + + W
Sbjct: 256 GYNLYGQLGN------------------------------------STNVSSSKAVDVAW 279

Query: 257 EPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFH-PV 315
                   +V +I  G  H+   G + V+   G+N YGQL  + +   +    +N + PV
Sbjct: 280 LK------DVSEIEAGAFHNYAKGSDSVVWGWGNNQYGQLLEKDETFELNVSRVNHNAPV 333

Query: 316 SI---------SSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGR 355
           +I         ++GL H +A+              + +WG+N   QLG 
Sbjct: 334 TIERLKGVQHLAAGLRHGVAVI----------GDTVFTWGFNSEGQLGN 372



 Score = 68.6 bits (166), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 86/295 (29%), Positives = 124/295 (42%), Gaps = 64/295 (21%)

Query: 68  SVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFAS 127
           S+SA    ++A   N  V +WG     QLG G+L    T   P  V  L + +V    A 
Sbjct: 28  SLSATVPRAVAGEVNPTVLSWGAGRTGQLGNGSLTDSLT---PTSVTSLFRSDVNKMSAG 84

Query: 128 GVVSS---AIGDDG-SLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGH 183
           G  S+   A+   G +L  WG +  GQLG G    +  VP+ V  L  +KI  V+ G  H
Sbjct: 85  GTSSADSFALALVGTTLKSWGDNASGQLGNGGR-ADQTVPAVVPGL--QKIKDVAAGGRH 141

Query: 184 ALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVS 243
           ALA   DG+++ WG ++ G++GN                +   D  I             
Sbjct: 142 ALALDTDGQVYSWGDNSYGQLGN----------------NRTGDDRI------------- 172

Query: 244 EGMEKEKYMPIIWEPFLVEGV-EVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQD 302
                         P  V+G+ +V  ++ G D SL L  +G + S G  +YGQLG     
Sbjct: 173 -------------LPDRVQGLPKVKQVSAGCDFSLALLESGEVYSWGRGMYGQLGNGDYA 219

Query: 303 MGMFPVDIN--FHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGR 355
           +   PV +    + VSI +G  H+LA            A  + SWG+N   QLG 
Sbjct: 220 VSSVPVQVTDLTNIVSIDAGCHHALAQTN---------ANTVKSWGYNLYGQLGN 265



 Score = 43.1 bits (100), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 35/103 (33%), Positives = 50/103 (48%), Gaps = 18/103 (17%)

Query: 65  DVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALE---------SRATWNDPKRVEG 115
           DV+ + AG +H+ A  ++  VW WG N   QL    LE         SR   N P  +E 
Sbjct: 282 DVSEIEAGAFHNYAKGSDSVVWGWGNNQYGQL----LEKDETFELNVSRVNHNAPVTIER 337

Query: 116 LDQV-NVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDI 157
           L  V ++ A    GV  + IGD  +++ WG +  GQLG G  +
Sbjct: 338 LKGVQHLAAGLRHGV--AVIGD--TVFTWGFNSEGQLGNGTTV 376


>gi|402880679|ref|XP_003903925.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC4 isoform 3
           [Papio anubis]
          Length = 979

 Score = 95.1 bits (235), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 78/316 (24%), Positives = 137/316 (43%), Gaps = 49/316 (15%)

Query: 55  EPTRVPGLPS-DVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRV 113
           +P +V  L + ++ +VS G  H+LA+ + G V+AWG +++ QLG   L S      P+ +
Sbjct: 74  KPEQVVALDAQNIVAVSCGEAHTLALNDKGQVYAWGLDSDGQLG--LLGSEECIRVPRNI 131

Query: 114 EGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEK 173
           + L  + +         S A+     ++ WG++K GQLGLG D  +   P  +++L G  
Sbjct: 132 KSLSDIQIIQVACGYYHSLALSKASEVFCWGQNKYGQLGLGTDCKKQTSPQLIKSLLGIP 191

Query: 174 IVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSS 233
            ++V+ G  H+   T  G +FGWG +  G++G          L+                
Sbjct: 192 FMQVAAGGAHSFVLTLSGAIFGWGRNKFGQLG----------LND--------------- 226

Query: 234 TIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVY 293
                        E ++Y+P + +   +   ++V I CG DH+  L + G + + G+  Y
Sbjct: 227 -------------ENDRYVPNLLKS--LRSQKIVYICCGEDHTAALTKEGGVFTFGAGGY 271

Query: 294 GQLGREKQDMGMFPVDINFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQL 353
           GQLG       + P  +      +   +   +A     +S     +  I S+G   + QL
Sbjct: 272 GQLGHNSTSHEINPRKV----FELMGSIVTQIACGRQHTSAFVPSSGRIYSFGLGGNGQL 327

Query: 354 GRMGPDN--VPLVVEG 367
           G     N   P  V+G
Sbjct: 328 GTGSTSNRKSPFTVKG 343



 Score = 81.3 bits (199), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 61/192 (31%), Positives = 100/192 (52%), Gaps = 16/192 (8%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVP-GLPS----DVTSVSAGHYHSLAVTNNG 83
           V ++G  S G LGL      +G +  E  RVP  + S     +  V+ G+YHSLA++   
Sbjct: 105 VYAWGLDSDGQLGL------LGSE--ECIRVPRNIKSLSDIQIIQVACGYYHSLALSKAS 156

Query: 84  AVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVW 143
            V+ WG+N   QLG G    + T   P+ ++ L  +      A G  S  +   G+++ W
Sbjct: 157 EVFCWGQNKYGQLGLGTDCKKQT--SPQLIKSLLGIPFMQVAAGGAHSFVLTLSGAIFGW 214

Query: 144 GKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGR 203
           G++K GQLGL  D  +  VP+ +++L  +KIV +  G  H  A T++G +F +G    G+
Sbjct: 215 GRNKFGQLGLN-DENDRYVPNLLKSLRSQKIVYICCGEDHTAALTKEGGVFTFGAGGYGQ 273

Query: 204 IGNLGKALESSP 215
           +G+   + E +P
Sbjct: 274 LGHNSTSHEINP 285



 Score = 71.2 bits (173), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 67/273 (24%), Positives = 111/273 (40%), Gaps = 57/273 (20%)

Query: 87  AWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKS 146
            WG  +  QLG G ++      +P++ +      V         +  + DDG+++  G +
Sbjct: 3   CWGNASFGQLGLGGIDEEIVL-EPRKSDFFINKKVRDVGCGLRHTVFVLDDGTVYTCGCN 61

Query: 147 KRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGN 206
             GQLG  K   +   P +V AL  + IV VS G  H LA  + G+++ WG  +DG++G 
Sbjct: 62  DLGQLGHEKSRKK---PEQVVALDAQNIVAVSCGEAHTLALNDKGQVYAWGLDSDGQLGL 118

Query: 207 LGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEV 266
           LG   E   +  NI   S+                                      +++
Sbjct: 119 LGSE-ECIRVPRNIKSLSD--------------------------------------IQI 139

Query: 267 VDIACGFDHSLVLGRNGVLLSCGSNVYGQLG-----REKQDMGMFPVDINFHPVSISSGL 321
           + +ACG+ HSL L +   +   G N YGQLG     +++    +    +    + +++G 
Sbjct: 140 IQVACGYYHSLALSKASEVFCWGQNKYGQLGLGTDCKKQTSPQLIKSLLGIPFMQVAAGG 199

Query: 322 GHSLAICEVRSSNVTGGARGIVSWGWNRSSQLG 354
            HS  +          GA  I  WG N+  QLG
Sbjct: 200 AHSFVL-------TLSGA--IFGWGRNKFGQLG 223


>gi|147899463|ref|NP_001085604.1| HECT and RLD domain containing E3 ubiquitin protein ligase 3
           [Xenopus laevis]
 gi|49256123|gb|AAH73004.1| MGC82587 protein [Xenopus laevis]
          Length = 1050

 Score = 94.7 bits (234), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 74/260 (28%), Positives = 123/260 (47%), Gaps = 22/260 (8%)

Query: 55  EPTRVPGLPSD-VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRV 113
            P  V  L  + +  ++ G  HSLA++  G +++WG  N+ QLG   +E  +    P+ +
Sbjct: 74  HPAPVATLAEEHIKHIACGQSHSLALSLQGNLYSWGAGNDGQLGHATVEHYS--RIPRII 131

Query: 114 EGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEK 173
           + L Q  +           A+GDDG L+ WG++  GQLGLG        P +V++L G  
Sbjct: 132 KKLSQQKIQQMSCGDDHCLALGDDGQLFTWGQNTHGQLGLGNGFISQSSPQKVKSLEGIP 191

Query: 174 IVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSE----SDQE 229
           + +V+ G  H+ A +  G +FGWG ++ G++G   + ++ +P      R+ +    S  E
Sbjct: 192 LAQVTAGGSHSFALSLSGAVFGWGKNSAGQLGLNDEQVKETPCHVKPLRTHKVVYISCGE 251

Query: 230 ISSSTIEKAQKLVSEG-----------MEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLV 278
             ++ + KA  L + G           +  E     + E   + G EV  IACG  H+L 
Sbjct: 252 EHTAILTKAGGLFTFGAGGSGQLGHDSLHNEINPRRVLE---LMGSEVSQIACGRKHTLA 308

Query: 279 L-GRNGVLLSCGSNVYGQLG 297
               +G L + G    GQLG
Sbjct: 309 FVPSSGTLYAFGCGDLGQLG 328



 Score = 57.8 bits (138), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 57/230 (24%), Positives = 96/230 (41%), Gaps = 68/230 (29%)

Query: 136 DDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFG 195
           +DG ++  G +  GQLG   + T    P+ V  LA E I  ++ G  H+LA +  G L+ 
Sbjct: 51  EDGQVYSCGWNGEGQLGHSHEGTH---PAPVATLAEEHIKHIACGQSHSLALSLQGNLYS 107

Query: 196 WGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPII 255
           WG   DG++G+           + ++  S   + I   + +K Q++              
Sbjct: 108 WGAGNDGQLGH-----------ATVEHYSRIPRIIKKLSQQKIQQM-------------- 142

Query: 256 WEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLG-----------REKQDMG 304
                         +CG DH L LG +G L + G N +GQLG           ++ + + 
Sbjct: 143 --------------SCGDDHCLALGDDGQLFTWGQNTHGQLGLGNGFISQSSPQKVKSLE 188

Query: 305 MFPVDINFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLG 354
             P+        +++G  HS A+      +++G   G   WG N + QLG
Sbjct: 189 GIPL------AQVTAGGSHSFAL------SLSGAVFG---WGKNSAGQLG 223



 Score = 41.2 bits (95), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 34/111 (30%), Positives = 52/111 (46%), Gaps = 14/111 (12%)

Query: 266 VVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDI--NFHPVSISSGLGH 323
           V ++ACG  H+L L  +G + SCG N  GQLG   +     PV      H   I+ G  H
Sbjct: 36  VKEVACGGKHTLFLMEDGQVYSCGWNGEGQLGHSHEGTHPAPVATLAEEHIKHIACGQSH 95

Query: 324 SLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPDN---VPLVVEGLEGE 371
           SLA+      ++ G    + SWG     QLG    ++   +P +++ L  +
Sbjct: 96  SLAL------SLQG---NLYSWGAGNDGQLGHATVEHYSRIPRIIKKLSQQ 137


>gi|428164001|gb|EKX33045.1| hypothetical protein GUITHDRAFT_148202 [Guillardia theta CCMP2712]
          Length = 371

 Score = 94.7 bits (234), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 84/280 (30%), Positives = 131/280 (46%), Gaps = 33/280 (11%)

Query: 26  GTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAV 85
           G  V  +G G  G LGL T+ +      + P  +   P  V ++S G  HSL +T +G +
Sbjct: 97  GGDVFVWGRGFSGQLGLGTNKS-----HFTPQPLS-FPMPVKALSCGGSHSLFITEDGRL 150

Query: 86  WAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGK 145
           +A GR  E QLG G+ ES  +  + +  EG  +V   AA      S    + G ++ +G 
Sbjct: 151 YATGRGKEGQLGTGSQESVLSPVEVQMPEGSGRVK--AAECGKDFSVIATESGQVFTFGS 208

Query: 146 SKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIG 205
              GQLGLG+    A+ P  V  LAG+ +  ++ G  HA A T DGKL+ WGY   G++G
Sbjct: 209 DDYGQLGLGQFARYAMTPKEVAVLAGKNVRSIAAGDYHAAAVTSDGKLYTWGYGRSGQLG 268

Query: 206 N----------LGKALESSPLDS----------NIDRSSESDQEISSSTIEKAQKLVSEG 245
           N          L + L++  + S           IDR  +    + SS + ++ ++   G
Sbjct: 269 NGNTVDVSLPVLVRELQNLRVQSVACGCDHTVAVIDRGLKEQLMLISSQVLESGEVFVMG 328

Query: 246 MEKEKYM---PIIWEPFLVEGV--EVVDIACGFDHSLVLG 280
             +E  +    I+  P +   V  +V  +ACG  H+L  G
Sbjct: 329 RGREGQLGRGDIVESPAVYRSVPLQVQQVACGTSHTLARG 368



 Score = 54.7 bits (130), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 68/249 (27%), Positives = 107/249 (42%), Gaps = 64/249 (25%)

Query: 131 SSAIGDDGSLWVWGKSKRGQLGLGKDITEAI-----VPSRVEALAGEKIVKVSFGWGHAL 185
           ++AI   G ++VWG+   GQLGLG + +         P  V+AL        S G  H+L
Sbjct: 91  AAAIVGGGDVFVWGRGFSGQLGLGTNKSHFTPQPLSFPMPVKAL--------SCGGSHSL 142

Query: 186 AQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEG 245
             TEDG+L+  G   +G++G   +    SP+                             
Sbjct: 143 FITEDGRLYATGRGKEGQLGTGSQESVLSPV----------------------------- 173

Query: 246 MEKEKYMPIIWEPFLVEGVEVVDIA-CGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMG 304
              E  MP        EG   V  A CG D S++   +G + + GS+ YGQLG     +G
Sbjct: 174 ---EVQMP--------EGSGRVKAAECGKDFSVIATESGQVFTFGSDDYGQLG-----LG 217

Query: 305 MFP-VDINFHPVSISSGLG-HSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPDNV- 361
            F    +    V++ +G    S+A  +  ++ VT   + + +WG+ RS QLG     +V 
Sbjct: 218 QFARYAMTPKEVAVLAGKNVRSIAAGDYHAAAVTSDGK-LYTWGYGRSGQLGNGNTVDVS 276

Query: 362 -PLVVEGLE 369
            P++V  L+
Sbjct: 277 LPVLVRELQ 285


>gi|408501216|ref|YP_006865135.1| RCC1-like protein [Bifidobacterium asteroides PRL2011]
 gi|408466040|gb|AFU71569.1| RCC1-like protein [Bifidobacterium asteroides PRL2011]
          Length = 1086

 Score = 94.7 bits (234), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 81/274 (29%), Positives = 122/274 (44%), Gaps = 52/274 (18%)

Query: 60  PGLPSDVT--SVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLD 117
           P LP+D T   VSAG YHSLA+ ++G  WAWG N E QLG G   +R   N P  V+  D
Sbjct: 737 PDLPADFTYVQVSAGRYHSLALGSDGNAWAWGSNFEGQLGDGTGTNR---NTPVMVKTPD 793

Query: 118 Q---VNVCAAFASGVVSS------AIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEA 168
           +    ++ A F    VS+      A+G DG+ W WG++  GQLG G   T+   P RV+ 
Sbjct: 794 RSTYPDLPADFTYVQVSAGWLHSLALGSDGNAWAWGRNTNGQLGDGTSGTDRTAPVRVKM 853

Query: 169 LAGE---------KIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSN 219
                           +VS    H+LA   DG  + WG +  G +GN             
Sbjct: 854 PDRNTYPDLPKDFTYAQVSAEGDHSLAVGSDGNAWAWGCNFYGPLGN------------- 900

Query: 220 IDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVL 279
               + ++ +  ++ + K  +  +   +K K            G +   ++ G+ +SL L
Sbjct: 901 ----NTTNWQGDANPVPKRVRDSANPTDKSK------------GQQATQVSGGYHYSLAL 944

Query: 280 GRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFH 313
           G +G   + G N  GQLG    +    PV + F+
Sbjct: 945 GSDGNAYAWGYNSSGQLGDGTTNDKSVPVPVAFN 978



 Score = 89.0 bits (219), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 100/352 (28%), Positives = 147/352 (41%), Gaps = 60/352 (17%)

Query: 60  PGLPSDVT--SVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLD 117
           P LP+D T   VSAG  HSLA+ ++G  +AWG N + QLG G    R   N P RV+  D
Sbjct: 614 PDLPADFTYVQVSAGGQHSLALGSDGNAYAWGYNVQGQLGDGTGTGR---NTPVRVKTPD 670

Query: 118 Q---VNVCAAF------ASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEA 168
           +    ++ A F      A G  S A+G DG+ + WG +  GQLG G        P RVE 
Sbjct: 671 RKTYPDLPADFTYVQVSAGGQHSLALGSDGNAYAWGYNVNGQLGGGTSNDYRRTPVRVET 730

Query: 169 ---------LAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSP-LDS 218
                     A    V+VS G  H+LA   DG  + WG + +G++G+      ++P +  
Sbjct: 731 PDRKTYPDLPADFTYVQVSAGRYHSLALGSDGNAWAWGSNFEGQLGDGTGTNRNTPVMVK 790

Query: 219 NIDRSSESDQEISSSTIE------KAQKLVSEGME-----------------KEKYMPII 255
             DRS+  D     + ++       +  L S+G                    ++  P+ 
Sbjct: 791 TPDRSTYPDLPADFTYVQVSAGWLHSLALGSDGNAWAWGRNTNGQLGDGTSGTDRTAPVR 850

Query: 256 WE-------PFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGRE----KQDMG 304
            +       P L +      ++   DHSL +G +G   + G N YG LG      + D  
Sbjct: 851 VKMPDRNTYPDLPKDFTYAQVSAEGDHSLAVGSDGNAWAWGCNFYGPLGNNTTNWQGDAN 910

Query: 305 MFP--VDINFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLG 354
             P  V  + +P   S G   +        S   G      +WG+N S QLG
Sbjct: 911 PVPKRVRDSANPTDKSKGQQATQVSGGYHYSLALGSDGNAYAWGYNSSGQLG 962



 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 88/315 (27%), Positives = 127/315 (40%), Gaps = 70/315 (22%)

Query: 69  VSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESR----ATWNDPKRVEGLD---QVNV 121
           +++ +  SLAV ++G  +AWG N   QLG G    R      W  P R    D       
Sbjct: 564 INSNYGFSLAVGSDGNAYAWGYNYNGQLGDGTSTERHAPVMVWM-PDRKTYPDLPADFTY 622

Query: 122 CAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEA---------LAGE 172
               A G  S A+G DG+ + WG + +GQLG G   T    P RV+           A  
Sbjct: 623 VQVSAGGQHSLALGSDGNAYAWGYNVQGQLGDGTG-TGRNTPVRVKTPDRKTYPDLPADF 681

Query: 173 KIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISS 232
             V+VS G  H+LA   DG  + WGY+ +G++G                          +
Sbjct: 682 TYVQVSAGGQHSLALGSDGNAYAWGYNVNGQLGG------------------------GT 717

Query: 233 STIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNV 292
           S   +   +  E  +++ Y      P L      V ++ G  HSL LG +G   + GSN 
Sbjct: 718 SNDYRRTPVRVETPDRKTY------PDLPADFTYVQVSAGRYHSLALGSDGNAWAWGSNF 771

Query: 293 YGQLGR------------EKQDMGMFP-VDINFHPVSISSGLGHSLAICEVRSSNVTGGA 339
            GQLG             +  D   +P +  +F  V +S+G  HSLA+         G  
Sbjct: 772 EGQLGDGTGTNRNTPVMVKTPDRSTYPDLPADFTYVQVSAGWLHSLAL---------GSD 822

Query: 340 RGIVSWGWNRSSQLG 354
               +WG N + QLG
Sbjct: 823 GNAWAWGRNTNGQLG 837



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 51/145 (35%), Positives = 63/145 (43%), Gaps = 28/145 (19%)

Query: 31  SFGDGSQGALGLPTSLTGVGGDAYEPTRV--------PGLPSDVT--SVSAGHYHSLAVT 80
           ++G  + G LG  TS    G D   P RV        P LP D T   VSA   HSLAV 
Sbjct: 827 AWGRNTNGQLGDGTS----GTDRTAPVRVKMPDRNTYPDLPKDFTYAQVSAEGDHSLAVG 882

Query: 81  NNGAVWAWGRNNEVQLGRGALESRATWND-PKRV----------EGLDQVNVCAAFASGV 129
           ++G  WAWG N    LG      +   N  PKRV          +G     V   +    
Sbjct: 883 SDGNAWAWGCNFYGPLGNNTTNWQGDANPVPKRVRDSANPTDKSKGQQATQVSGGYH--- 939

Query: 130 VSSAIGDDGSLWVWGKSKRGQLGLG 154
            S A+G DG+ + WG +  GQLG G
Sbjct: 940 YSLALGSDGNAYAWGYNSSGQLGDG 964


>gi|330837342|ref|YP_004411983.1| hypothetical protein [Sphaerochaeta coccoides DSM 17374]
 gi|329749245|gb|AEC02601.1| hypothetical protein Spico_1397 [Sphaerochaeta coccoides DSM 17374]
          Length = 719

 Score = 94.7 bits (234), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 72/242 (29%), Positives = 115/242 (47%), Gaps = 51/242 (21%)

Query: 64  SDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCA 123
           +DV  VSAG++H++ V  +G +WA G N++ QLG G  ++R+T   P  V      NV A
Sbjct: 445 TDVKEVSAGYFHTMIVKKDGTLWATGFNSQGQLGVGDNDARST---PVYV----MENVAA 497

Query: 124 AFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAG-----EKIVKVS 178
             A G  +  +  DG+LW  G++  GQLG G   T+ I P +V+A          +  VS
Sbjct: 498 VSARGYYTIILKKDGTLWATGQNGYGQLGDGT-TTDRITPVQVKASIAPNDFMTDVKAVS 556

Query: 179 FGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKA 238
            G+ H L   +DG L+  GY+  G++G+                                
Sbjct: 557 AGYNHTLILKKDGTLWATGYNYYGQLGD-------------------------------- 584

Query: 239 QKLVSEGMEKEKYMPI-IWEPF--LVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQ 295
               + G    K  P+ +W     LV+  +V  ++ G+ H+L+L ++G L + G N++GQ
Sbjct: 585 ---GTSGTVNNKSTPVQVWASTDGLVKMTDVAAVSAGYAHTLILKKDGTLWATGYNLHGQ 641

Query: 296 LG 297
           LG
Sbjct: 642 LG 643



 Score = 88.6 bits (218), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 67/256 (26%), Positives = 121/256 (47%), Gaps = 23/256 (8%)

Query: 60  PGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQV 119
           P +   V  VSAG++H++ +  +G +WA GRNN  QLG G        + P +V      
Sbjct: 333 PAVKLGVKKVSAGNFHTMILKTDGTLWATGRNNFGQLGVGTSGDSNNKSTPVQV----MT 388

Query: 120 NVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEK-----I 174
           +V A       +  +  DG+LW  G +  GQLG G   T    P +V+A          +
Sbjct: 389 DVKAVSTGNYYTMILKKDGTLWATGANGEGQLGDGT-TTNRTTPVQVKASTAANDFMTDV 447

Query: 175 VKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSST 234
            +VS G+ H +   +DG L+  G+++ G++G       S+P+    + ++ S +   +  
Sbjct: 448 KEVSAGYFHTMIVKKDGTLWATGFNSQGQLGVGDNDARSTPVYVMENVAAVSARGYYTII 507

Query: 235 IEKAQKL----------VSEGMEKEKYMPIIWEPFLVEG---VEVVDIACGFDHSLVLGR 281
           ++K   L          + +G   ++  P+  +  +       +V  ++ G++H+L+L +
Sbjct: 508 LKKDGTLWATGQNGYGQLGDGTTTDRITPVQVKASIAPNDFMTDVKAVSAGYNHTLILKK 567

Query: 282 NGVLLSCGSNVYGQLG 297
           +G L + G N YGQLG
Sbjct: 568 DGTLWATGYNYYGQLG 583



 Score = 60.8 bits (146), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 49/152 (32%), Positives = 79/152 (51%), Gaps = 10/152 (6%)

Query: 64  SDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRV----EGLDQV 119
           +DV +VSAG+ H+L +  +G +WA G N   QLG G   +    + P +V    +GL ++
Sbjct: 550 TDVKAVSAGYNHTLILKKDGTLWATGYNYYGQLGDGTSGTVNNKSTPVQVWASTDGLVKM 609

Query: 120 NVCAAFASGVVSSAI-GDDGSLWVWGKSKRGQLGLGKD--ITEAIVPSRVEALAGEKIVK 176
              AA ++G   + I   DG+LW  G +  GQLGLG     T   +P RV+A   + +  
Sbjct: 610 TDVAAVSAGYAHTLILKKDGTLWATGYNLHGQLGLGNSGAGTNRNIPERVKASPDDFMTD 669

Query: 177 VS---FGWGHALAQTEDGKLFGWGYSADGRIG 205
           V+    G+ H +   +D  L+  G +  G++G
Sbjct: 670 VADVFAGYYHTMIVKKDVTLWVTGDNEYGQLG 701



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/109 (35%), Positives = 57/109 (52%), Gaps = 10/109 (9%)

Query: 64  SDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQ---VN 120
           +DV +VSAG+ H+L +  +G +WA G N   QLG G   +    N P+RV+        +
Sbjct: 610 TDVAAVSAGYAHTLILKKDGTLWATGYNLHGQLGLGNSGAGTNRNIPERVKASPDDFMTD 669

Query: 121 VCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLG-------KDITEAIV 162
           V   FA    +  +  D +LWV G ++ GQLGLG       K+I E +V
Sbjct: 670 VADVFAGYYHTMIVKKDVTLWVTGDNEYGQLGLGNSGEGTSKNIPEQVV 718


>gi|449499989|ref|XP_004174916.1| PREDICTED: LOW QUALITY PROTEIN: probable E3 ubiquitin-protein
           ligase HERC3-like [Taeniopygia guttata]
          Length = 1050

 Score = 94.7 bits (234), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 79/306 (25%), Positives = 137/306 (44%), Gaps = 48/306 (15%)

Query: 28  AVVSFGDGSQGALGLPTS-LTGVGGDAYEPTRVPGLP-SDVTSVSAGHYHSLAVTNNGAV 85
           +V    DG     GL T    G   +  +P ++  L    +  V+ G  HS+A+++ G +
Sbjct: 46  SVFLLEDGEVYTCGLNTKGQLGHDCEGSKPEQIGALAGQHIVHVACGESHSVALSDQGQL 105

Query: 86  WAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGK 145
           ++WG  ++ QLG   +E   T   P+ ++ L+Q  +           A+  DG  + WG+
Sbjct: 106 FSWGAGSDGQLGLTTIEDAVTV--PRLIKKLNQQTILQVSCGNWHCLALAADGQFFTWGQ 163

Query: 146 SKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIG 205
           +  GQLGLGK+      P RV++L G  + +V+ G  H+ A +  G +FGWG ++ G++G
Sbjct: 164 NSYGQLGLGKECPSQASPQRVKSLDGIPLAQVAAGGAHSFALSLSGAVFGWGKNSSGQLG 223

Query: 206 NLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVE 265
              +    SP    + RS                                         +
Sbjct: 224 LSDERDRESPCHVKLLRSQ----------------------------------------K 243

Query: 266 VVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFP---VDINFHPVS-ISSGL 321
           VV I+CG +H+ VL ++G + + G+   GQLG +  +  + P   +++    VS I+ G 
Sbjct: 244 VVYISCGEEHTAVLTKSGGVFTFGAGSCGQLGHDSMNDEVNPRRVLELMGSEVSQIACGR 303

Query: 322 GHSLAI 327
            H+LA 
Sbjct: 304 HHTLAF 309



 Score = 65.1 bits (157), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 76/292 (26%), Positives = 125/292 (42%), Gaps = 69/292 (23%)

Query: 87  AWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKS 146
            WG ++  Q G G+   +    +P+    +   NV      G  S  + +DG ++  G +
Sbjct: 3   CWGYSSYGQPGIGS-NLQVIIPEPQVYGFIHDRNVKEVACGGNHSVFLLEDGEVYTCGLN 61

Query: 147 KRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGN 206
            +GQLG      E   P ++ ALAG+ IV V+ G  H++A ++ G+LF WG  +DG++G 
Sbjct: 62  TKGQLGHD---CEGSKPEQIGALAGQHIVHVACGESHSVALSDQGQLFSWGAGSDGQLG- 117

Query: 207 LGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVE- 265
                                     +TIE A                +  P L++ +  
Sbjct: 118 -------------------------LTTIEDA----------------VTVPRLIKKLNQ 136

Query: 266 --VVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREK----QDMGMFPVDINFHPVS-IS 318
             ++ ++CG  H L L  +G   + G N YGQLG  K    Q        ++  P++ ++
Sbjct: 137 QTILQVSCGNWHCLALAADGQFFTWGQNSYGQLGLGKECPSQASPQRVKSLDGIPLAQVA 196

Query: 319 SGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLG------RMGPDNVPLV 364
           +G  HS A+      +++G   G   WG N S QLG      R  P +V L+
Sbjct: 197 AGGAHSFAL------SLSGAVFG---WGKNSSGQLGLSDERDRESPCHVKLL 239



 Score = 40.0 bits (92), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 37/129 (28%), Positives = 60/129 (46%), Gaps = 21/129 (16%)

Query: 254 IIWEPF---LVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDI 310
           II EP     +    V ++ACG +HS+ L  +G + +CG N  GQLG + +  G  P  I
Sbjct: 21  IIPEPQVYGFIHDRNVKEVACGGNHSVFLLEDGEVYTCGLNTKGQLGHDCE--GSKPEQI 78

Query: 311 NF----HPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPDN---VPL 363
                 H V ++ G  HS+A+ +            + SWG     QLG    ++   VP 
Sbjct: 79  GALAGQHIVHVACGESHSVALSD---------QGQLFSWGAGSDGQLGLTTIEDAVTVPR 129

Query: 364 VVEGLEGES 372
           +++ L  ++
Sbjct: 130 LIKKLNQQT 138


>gi|307176968|gb|EFN66274.1| X-linked retinitis pigmentosa GTPase regulator-like protein
            [Camponotus floridanus]
          Length = 1719

 Score = 94.7 bits (234), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 66/187 (35%), Positives = 98/187 (52%), Gaps = 6/187 (3%)

Query: 29   VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAW 88
            + ++G   QG LG  +S+   G   +       +  +V SVS GH H+LAVTNNG ++AW
Sbjct: 833  IYTWGSSVQGCLGTGSSVLRYGA-PHAICFFRSMEVEVFSVSCGHCHTLAVTNNG-IYAW 890

Query: 89   GRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKR 148
            G +   QLG G +   ++   P+ +  L Q  +  A A    S A+  DG ++ WG    
Sbjct: 891  GSSQFGQLGLGKVLQCSS---PELIISLAQEIIIDAVAGQYHSVALTADGRVFTWGWGIH 947

Query: 149  GQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLG 208
            GQLG G +  E I PS V AL G  +  +S G+ H LA + DG ++ +G +  G++G  G
Sbjct: 948  GQLGHG-NTDEKITPSLVTALLGVVVRCISAGYAHTLALSVDGIVYAFGSNVLGQLGIGG 1006

Query: 209  KALESSP 215
             A  S P
Sbjct: 1007 NAKSSIP 1013



 Score = 88.2 bits (217), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 76/276 (27%), Positives = 124/276 (44%), Gaps = 49/276 (17%)

Query: 68   SVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLD--QVNVCAAF 125
            S+SAG  H +A+  NG ++ WG + +  LG G+  S   +  P  +      +V V +  
Sbjct: 817  SLSAGFSH-VALIRNGNIYTWGSSVQGCLGTGS--SVLRYGAPHAICFFRSMEVEVFSVS 873

Query: 126  ASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHAL 185
                 + A+ ++G ++ WG S+ GQLGLGK + +   P  + +LA E I+    G  H++
Sbjct: 874  CGHCHTLAVTNNG-IYAWGSSQFGQLGLGK-VLQCSSPELIISLAQEIIIDAVAGQYHSV 931

Query: 186  AQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEG 245
            A T DG++F WG+   G++G+                                      G
Sbjct: 932  ALTADGRVFTWGWGIHGQLGH--------------------------------------G 953

Query: 246  MEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGM 305
               EK  P +    L  GV V  I+ G+ H+L L  +G++ + GSNV GQLG        
Sbjct: 954  NTDEKITPSLVTALL--GVVVRCISAGYAHTLALSVDGIVYAFGSNVLGQLGIGGNAKSS 1011

Query: 306  FPVDINFHP--VSISSGLGHSLAICEVRSSNVTGGA 339
             P  I+     + I++G  H+LA+ +     V G +
Sbjct: 1012 IPTKISLPDGIILINTGYFHNLALSDTNKLYVWGAS 1047



 Score = 62.4 bits (150), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 76/328 (23%), Positives = 132/328 (40%), Gaps = 79/328 (24%)

Query: 29   VVSFGDGSQGALGLPTSLTGVGGDAYE--PTRVPGLPSDVTSVSAGHYHSLAVTNNGAVW 86
            V +FG    G LG       +GG+A    PT++  LP  +  ++ G++H+LA+++   ++
Sbjct: 991  VYAFGSNVLGQLG-------IGGNAKSSIPTKI-SLPDGIILINTGYFHNLALSDTNKLY 1042

Query: 87   AWGRNNEVQLGRGALESRA---TWNDPKRVEGLDQVNVCAAFASGVV--SSAIGDDGSLW 141
             WG + +V   +   + R       D ++ + L++        SGV+  +  + +D    
Sbjct: 1043 VWGASPQVLRLQAQAQKRTRILEQQDERKNKTLEE---SEKMPSGVINLNEDLLEDSVQT 1099

Query: 142  V---------------WGKSKRGQLGLGKDITEAIVPSRVE-ALAGEKIVKVSFGWGHAL 185
            V                G +    + L  +    + PS V+ +L   +I ++S G  H  
Sbjct: 1100 VETERITSSVETRKKPSGSANLRNIELIDESQAHLKPSIVDTSLIRGQITQISAGCHHNA 1159

Query: 186  AQTEDGKLFGWGYSADGRIGNLGKALE---SSPLDSN-----------------IDRSSE 225
              T+DG L+ WG + DG++GN G   E    +PL  N                      +
Sbjct: 1160 LITKDGSLYTWGRNLDGQLGN-GTRKEVPIPTPLSYNPACILAQIPPRHTDFKKTQNQRD 1218

Query: 226  SDQEISSSTIEKAQKLVSEG---------------MEKEKYMPIIWEPFLVEGVEVVDIA 270
            SD    S+ +    K   E                  KE+  PII           V I 
Sbjct: 1219 SDNGAKSNDLSTNNKNAHENNGNVTGVSKSENIDHNNKERSNPII---------NTVGIV 1269

Query: 271  CGFDHSLVLGRNGVLLSCGSNVYGQLGR 298
            CG+D+++ +   G +L+ G+N   QLGR
Sbjct: 1270 CGYDYTVAIQPGGTVLAWGNNNRAQLGR 1297



 Score = 40.8 bits (94), Expect = 0.96,   Method: Composition-based stats.
 Identities = 33/109 (30%), Positives = 50/109 (45%), Gaps = 8/109 (7%)

Query: 264 VEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFHPVSISSGLGH 323
           VEV  ++CG  H+L +  NG+  + GS+ +GQLG  K      P  I    +S++  +  
Sbjct: 867 VEVFSVSCGHCHTLAVTNNGI-YAWGSSQFGQLGLGKVLQCSSPELI----ISLAQEIII 921

Query: 324 SLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPDN--VPLVVEGLEG 370
                +  S  +T   R + +WGW    QLG    D    P +V  L G
Sbjct: 922 DAVAGQYHSVALTADGR-VFTWGWGIHGQLGHGNTDEKITPSLVTALLG 969


>gi|296220557|ref|XP_002756356.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC4 isoform 1
           [Callithrix jacchus]
          Length = 1057

 Score = 94.7 bits (234), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 78/316 (24%), Positives = 137/316 (43%), Gaps = 49/316 (15%)

Query: 55  EPTRVPGLPS-DVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRV 113
           +P +V  L + ++ +VS G  H+LA+ + G V+AWG +++ QLG   L S      P+ +
Sbjct: 74  KPEQVVALDAQNIVAVSCGEAHTLALNDKGQVYAWGLDSDGQLG--LLGSEECIRVPRNI 131

Query: 114 EGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEK 173
           + L  + +         S A+     ++ WG++K GQLGLG D  +   P  +++L G  
Sbjct: 132 KSLSDIQIVQVACGYYHSLALSKASEVFCWGQNKYGQLGLGTDCKKQTSPQLIKSLLGIP 191

Query: 174 IVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSS 233
            ++V+ G  H+   T  G +FGWG +  G++G          L+                
Sbjct: 192 FMQVAAGGAHSFVLTLSGAIFGWGRNKFGQLG----------LND--------------- 226

Query: 234 TIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVY 293
                        E ++Y+P + +   +   ++V I CG DH+  L + G + + G+  Y
Sbjct: 227 -------------ENDRYVPNLLKS--LRSQKIVYICCGEDHTAALTKEGGVFTFGAGGY 271

Query: 294 GQLGREKQDMGMFPVDINFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQL 353
           GQLG       + P  +      +   +   +A     +S     +  I S+G   + QL
Sbjct: 272 GQLGHNSTSHEINPRKV----FELMGSIVTQIACGRQHTSAFVPSSGRIYSFGLGGNGQL 327

Query: 354 GRMGPDN--VPLVVEG 367
           G     N   P  V+G
Sbjct: 328 GTGSTSNRKSPFTVKG 343



 Score = 81.3 bits (199), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 61/192 (31%), Positives = 100/192 (52%), Gaps = 16/192 (8%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVP-GLPS----DVTSVSAGHYHSLAVTNNG 83
           V ++G  S G LGL      +G +  E  RVP  + S     +  V+ G+YHSLA++   
Sbjct: 105 VYAWGLDSDGQLGL------LGSE--ECIRVPRNIKSLSDIQIVQVACGYYHSLALSKAS 156

Query: 84  AVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVW 143
            V+ WG+N   QLG G    + T   P+ ++ L  +      A G  S  +   G+++ W
Sbjct: 157 EVFCWGQNKYGQLGLGTDCKKQT--SPQLIKSLLGIPFMQVAAGGAHSFVLTLSGAIFGW 214

Query: 144 GKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGR 203
           G++K GQLGL  D  +  VP+ +++L  +KIV +  G  H  A T++G +F +G    G+
Sbjct: 215 GRNKFGQLGLN-DENDRYVPNLLKSLRSQKIVYICCGEDHTAALTKEGGVFTFGAGGYGQ 273

Query: 204 IGNLGKALESSP 215
           +G+   + E +P
Sbjct: 274 LGHNSTSHEINP 285



 Score = 72.0 bits (175), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 68/275 (24%), Positives = 112/275 (40%), Gaps = 57/275 (20%)

Query: 85  VWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWG 144
           +  WG  +  QLG G ++      +P++ +      V         +  + DDG+++  G
Sbjct: 1   MLCWGNASFGQLGLGGIDEEIVL-EPRKSDFFINKKVQDVGCGLRHTVFVLDDGTVYTCG 59

Query: 145 KSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRI 204
            +  GQLG  K   +   P +V AL  + IV VS G  H LA  + G+++ WG  +DG++
Sbjct: 60  CNDLGQLGHEKSRKK---PEQVVALDAQNIVAVSCGEAHTLALNDKGQVYAWGLDSDGQL 116

Query: 205 GNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGV 264
           G LG   E   +  NI   S+                                      +
Sbjct: 117 GLLGSE-ECIRVPRNIKSLSD--------------------------------------I 137

Query: 265 EVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLG-----REKQDMGMFPVDINFHPVSISS 319
           ++V +ACG+ HSL L +   +   G N YGQLG     +++    +    +    + +++
Sbjct: 138 QIVQVACGYYHSLALSKASEVFCWGQNKYGQLGLGTDCKKQTSPQLIKSLLGIPFMQVAA 197

Query: 320 GLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLG 354
           G  HS  +          GA  I  WG N+  QLG
Sbjct: 198 GGAHSFVL-------TLSGA--IFGWGRNKFGQLG 223


>gi|449268693|gb|EMC79542.1| X-linked retinitis pigmentosa GTPase regulator, partial [Columba
           livia]
          Length = 719

 Score = 94.7 bits (234), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 75/280 (26%), Positives = 136/280 (48%), Gaps = 24/280 (8%)

Query: 32  FGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVS-AGHYHSLAVTNNGAVWAWGR 90
           FG  + G LGL     G      +PT V  L  + T ++  G  H+L  T  G V+A G 
Sbjct: 54  FGSNNWGQLGL-----GSKNTVSKPTCVKALKPEKTKLAVCGRNHTLVYTEKGNVYAAGG 108

Query: 91  NNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQ 150
           N+E QLG G  E R+T++         ++   A  A    S+A+ +DG L+VWG +  GQ
Sbjct: 109 NSEGQLGLGDTEERSTFHLISFFTNQHKIKQLA--AGSYTSAAVTEDGQLFVWGDNSEGQ 166

Query: 151 LGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKA 210
           +GL     EA V    +   G+ +  +S G+ H+   T DG+L+ +G   +G++G L + 
Sbjct: 167 IGLAD---EACVSVPCQVDVGKPVSSISCGYYHSALITGDGELYTFGEPENGKLGLLPEQ 223

Query: 211 LESSPLDSNIDRSSESDQEISS----STIEKAQKLVSEGMEKEKYM---PIIWEPFLVEG 263
           L+++ +   +    E   +++     + +     + + G+ +   +     I+E  + + 
Sbjct: 224 LKNNRVPQPVPGIMEKVNKVACGGEHTVVLTETDVYTFGLGQYGQLGHGTFIFETSVPKS 283

Query: 264 V------EVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLG 297
           V      ++ +I CG +H+ V+  NG++ + G   +G+LG
Sbjct: 284 VKHLRRHKICNITCGENHTAVVAENGLMFTFGDGRHGKLG 323



 Score = 74.3 bits (181), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 73/242 (30%), Positives = 116/242 (47%), Gaps = 17/242 (7%)

Query: 69  VSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASG 128
           +S G  H+  VT NG ++ +G NN  QLG G   S+ T + P  V+ L       A    
Sbjct: 35  ISCGDEHTAIVTGNGKLYMFGSNNWGQLGLG---SKNTVSKPTCVKALKPEKTKLAVCGR 91

Query: 129 VVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGE-KIVKVSFGWGHALAQ 187
             +    + G+++  G +  GQLGLG D  E      +     + KI +++ G   + A 
Sbjct: 92  NHTLVYTEKGNVYAAGGNSEGQLGLG-DTEERSTFHLISFFTNQHKIKQLAAGSYTSAAV 150

Query: 188 TEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDR--SSESDQEISSSTIEKAQKLVSEG 245
           TEDG+LF WG +++G+IG   +A  S P   ++ +  SS S     S+ I    +L + G
Sbjct: 151 TEDGQLFVWGDNSEGQIGLADEACVSVPCQVDVGKPVSSISCGYYHSALITGDGELYTFG 210

Query: 246 MEKEKYMPIIWE-------PFLVEGV--EVVDIACGFDHSLVLGRNGVLLSCGSNVYGQL 296
             +   + ++ E       P  V G+  +V  +ACG +H++VL    V  + G   YGQL
Sbjct: 211 EPENGKLGLLPEQLKNNRVPQPVPGIMEKVNKVACGGEHTVVLTETDV-YTFGLGQYGQL 269

Query: 297 GR 298
           G 
Sbjct: 270 GH 271


>gi|160774403|gb|AAI55388.1| regulator of chromosome condensation (RCC1) and BTB (POZ) domain
           containing protein 1 [Xenopus (Silurana) tropicalis]
          Length = 530

 Score = 94.7 bits (234), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 61/191 (31%), Positives = 104/191 (54%), Gaps = 12/191 (6%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPG--LPSDVTSVSAGHYHSLAVTNNGAVW 86
           V S+G      LG   ++ GV      P +V    L   V  V+ G +HS+A+T++G V+
Sbjct: 96  VYSWGHNGYSQLGNGNAIQGVA-----PVQVCMELLAKKVVQVACGSHHSMALTSDGEVF 150

Query: 87  AWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSS-AIGDDGSLWVWGK 145
            WG NN  Q+G G   +++    P+RV    Q  V  + A+G  SS A+ D+G ++ WG 
Sbjct: 151 CWGYNNCGQVGSGTTANQSV---PRRVSATLQSKVVVSIAAGQSSSMAVTDNGHVYCWGY 207

Query: 146 SKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIG 205
           +  GQLG+G +    ++P R+       I++V  G+ H LA ++ G L+ WG ++ G++G
Sbjct: 208 NGTGQLGIG-NTGNQLMPCRLVFAHPVCIIQVVLGYAHTLALSDQGVLYAWGANSHGQLG 266

Query: 206 NLGKALESSPL 216
              K+ +++P+
Sbjct: 267 IGNKSNQTAPV 277



 Score = 79.3 bits (194), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 76/295 (25%), Positives = 129/295 (43%), Gaps = 28/295 (9%)

Query: 76  SLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVC-AAFASGVVSSAI 134
           ++  T N  V+ +G N+   LG G  +S      P+R++ L    +   ++ SG      
Sbjct: 34  AIYTTQNNEVFVFGMNSSNCLGTGDNQSTII---PRRLDVLCGKRIVDLSYGSGPHILVC 90

Query: 135 GDDGSLWVWGKSKRGQLGLGKDITEAIVPSRV-EALAGEKIVKVSFGWGHALAQTEDGKL 193
            +DG ++ WG +   QLG G  I + + P +V   L  +K+V+V+ G  H++A T DG++
Sbjct: 91  NEDGEVYSWGHNGYSQLGNGNAI-QGVAPVQVCMELLAKKVVQVACGSHHSMALTSDGEV 149

Query: 194 FGWGYSADGRIGNLGKALESSP------LDSNIDRSSESDQEISSSTIEKAQKL------ 241
           F WGY+  G++G+   A +S P      L S +  S  + Q  S +  +           
Sbjct: 150 FCWGYNNCGQVGSGTTANQSVPRRVSATLQSKVVVSIAAGQSSSMAVTDNGHVYCWGYNG 209

Query: 242 ---VSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGR 298
              +  G    + MP          V ++ +  G+ H+L L   GVL + G+N +GQLG 
Sbjct: 210 TGQLGIGNTGNQLMPC--RLVFAHPVCIIQVVLGYAHTLALSDQGVLYAWGANSHGQLGI 267

Query: 299 EKQDMGMFPVDINFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQL 353
             +     PV +  +   +     HS  I   +S      +  +  WG  R   L
Sbjct: 268 GNKSNQTAPVKVGTNERMVEVTACHSTNISAAKSQ-----SGQVYMWGLCRGQSL 317


>gi|198417628|ref|XP_002119426.1| PREDICTED: hect domain and RLD 2 [Ciona intestinalis]
          Length = 2335

 Score = 94.7 bits (234), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 102/355 (28%), Positives = 154/355 (43%), Gaps = 68/355 (19%)

Query: 26  GTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRV--PGLPSDVTSVSAGHYHSLAVTNNG 83
           G  V + G+ + G LGL      V G     T+V  P  P    +V +G  H++A+T +G
Sbjct: 481 GGKVYACGESTSGRLGL----GPVTGSVSRLTQVLFPQ-PIKKLAVHSGGRHAMALTYDG 535

Query: 84  AVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVW 143
            V++WG   E +LG G   SRA    P+++E   +  +         S+AIG  G+L+ W
Sbjct: 536 HVYSWGDGEEGKLGHG---SRADALTPRKIETFPEKCIRDISCGSSHSAAIGSSGTLYTW 592

Query: 144 GKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGW--GHALAQTEDGKLFGWGYSAD 201
           G    G+LG G + T  + P  V+AL+G+++V+V+ G      L  T+DG ++ WG   D
Sbjct: 593 GHGMYGRLGHGNNHT-LLKPKPVQALSGQQVVQVACGSRDAQTLCLTQDGLVYSWG---D 648

Query: 202 GRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLV 261
           G  G LG+                SD       +E+                       +
Sbjct: 649 GDFGKLGRG--------------GSDGCCVPKPVER-----------------------L 671

Query: 262 EGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDI----NFHPVSI 317
            G +VV I CG   SL L R G++ + G   Y +LG         P  +        V +
Sbjct: 672 SGQDVVKIECGAQFSLALSRCGLVWTWGKGDYFRLGHGSDQHVRRPQVVEGLREHKVVDV 731

Query: 318 SSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGP--DNVPLVVEGLEG 370
           + G  H LA+ E       GG   + +WG N   Q G  G   +  P+ V+GLEG
Sbjct: 732 AVGALHCLAVTE-------GGQ--VFAWGDNDHGQQGNGGTTVNRKPMKVQGLEG 777



 Score = 75.1 bits (183), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 64/196 (32%), Positives = 90/196 (45%), Gaps = 13/196 (6%)

Query: 24  ASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLP-SDVTSVSAGHY--HSLAVT 80
           +SGT + ++G G  G LG      G      +P  V  L    V  V+ G     +L +T
Sbjct: 585 SSGT-LYTWGHGMYGRLG-----HGNNHTLLKPKPVQALSGQQVVQVACGSRDAQTLCLT 638

Query: 81  NNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSL 140
            +G V++WG  +  +LGRG  +       PK VE L   +V         S A+   G +
Sbjct: 639 QDGLVYSWGDGDFGKLGRGGSDGCCV---PKPVERLSGQDVVKIECGAQFSLALSRCGLV 695

Query: 141 WVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSA 200
           W WGK    +LG G D      P  VE L   K+V V+ G  H LA TE G++F WG + 
Sbjct: 696 WTWGKGDYFRLGHGSD-QHVRRPQVVEGLREHKVVDVAVGALHCLAVTEGGQVFAWGDND 754

Query: 201 DGRIGNLGKALESSPL 216
            G+ GN G  +   P+
Sbjct: 755 HGQQGNGGTTVNRKPM 770



 Score = 71.2 bits (173), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 88/328 (26%), Positives = 146/328 (44%), Gaps = 57/328 (17%)

Query: 68   SVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFAS 127
            SV+AG  H LA++N G V++WG   + +LG G   +R++ + P+ +E L    +      
Sbjct: 1498 SVNAGGKHILALSNEGEVYSWGEGVDGKLGHG---NRSSLDHPRIIESLRGDLIVKVATG 1554

Query: 128  GVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHA--L 185
            G  S+AI   G L+ WGK + G+LG  +D  + + P  V AL    +V V+ G G A  L
Sbjct: 1555 GSHSAAINATGGLYTWGKGRYGRLG-HEDSEDQLKPKLVNALKDNLVVDVACGNGDAQTL 1613

Query: 186  AQTE----DGKLFGWGYSADGRIGNLGK---------ALESSPLDSNIDRSSESDQEISS 232
              TE       ++ WG   DG  G LG+         A+  + +  +I   +   Q   S
Sbjct: 1614 CITEGTGGSSVVWSWG---DGDYGKLGRGGSDGCKVPAIIDTLMGKHITHVACGSQ--FS 1668

Query: 233  STIEKAQKLVSEGMEKEKYMPI-------IWEPFLVE---GVEVVDIACGFDHSLVLGRN 282
              + KA  + + G  K  Y  +       +  P L+E   G++VV+++ G  H +    N
Sbjct: 1669 LALSKAGGVYTWG--KGDYYRLGHGSDEHVRRPKLIESLRGMKVVEVSVGSLHCIAAVDN 1726

Query: 283  GVLLSCGSNVYGQLGREKQDMGMFPVDINFHPVSISSGLGHSLAICEVRSSNVTGGARGI 342
            G + + G N  GQ+G                P  +++  GH +       S+V+ G+   
Sbjct: 1727 GDVYTWGDNDEGQIGDGTTQATQI-------PRLVAALQGHHI-------SHVSCGSAHT 1772

Query: 343  VSW-------GWNRSSQLGRMGPDNVPL 363
            V+W         ++  + G   PD +PL
Sbjct: 1773 VAWSLPSESHNMHKRRRTGAKLPDQIPL 1800



 Score = 64.7 bits (156), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 76/297 (25%), Positives = 115/297 (38%), Gaps = 64/297 (21%)

Query: 85  VWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWG 144
           V+ WG N++ QLG        T   P   + L ++ V           A+   G ++  G
Sbjct: 432 VFVWGLNDKDQLGGLKGSKHKT---PVASKDLQRLKVTQVIGGSKSLFAVTMGGKVYACG 488

Query: 145 KSKRGQLGLG------KDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGY 198
           +S  G+LGLG        +T+ + P  ++ LA      V  G  HA+A T DG ++ WG 
Sbjct: 489 ESTSGRLGLGPVTGSVSRLTQVLFPQPIKKLA------VHSGGRHAMALTYDGHVYSWGD 542

Query: 199 SADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEP 258
             +G++G+  +A      D+   R  E+  E                             
Sbjct: 543 GEEGKLGHGSRA------DALTPRKIETFPEKC--------------------------- 569

Query: 259 FLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFHPVSIS 318
                  + DI+CG  HS  +G +G L + G  +YG+LG       + P      PV   
Sbjct: 570 -------IRDISCGSSHSAAIGSSGTLYTWGHGMYGRLGHGNNHTLLKP-----KPVQAL 617

Query: 319 SGLGHSLAICEVRSSNVTGGARG--IVSWGWNRSSQLGRMGPDN--VPLVVEGLEGE 371
           SG       C  R +      +   + SWG     +LGR G D   VP  VE L G+
Sbjct: 618 SGQQVVQVACGSRDAQTLCLTQDGLVYSWGDGDFGKLGRGGSDGCCVPKPVERLSGQ 674



 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 94/361 (26%), Positives = 147/361 (40%), Gaps = 79/361 (21%)

Query: 28   AVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPS-DVTSVSAGHYHSLAVTNNGAVW 86
            ++  +G   +G LG P      G     P   P L +     +  G      VT  G V+
Sbjct: 1408 SIFGWGHNHRGQLGGPE-----GAKVKIPIPCPSLAALKPIQLVGGEQTLFTVTGEGKVF 1462

Query: 87   AWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVC--AAFASGVVSSAIGDDGSLWVWG 144
            A G     +LG G+ ES A    P  +E +  V++   +  A G    A+ ++G ++ WG
Sbjct: 1463 ATGYGAGGRLGIGSNESVAI---PTLIESIQHVHITQVSVNAGGKHILALSNEGEVYSWG 1519

Query: 145  KSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRI 204
            +   G+LG G + +    P  +E+L G+ IVKV+ G  H+ A    G L+ WG    GR 
Sbjct: 1520 EGVDGKLGHG-NRSSLDHPRIIESLRGDLIVKVATGGSHSAAINATGGLYTWG---KGRY 1575

Query: 205  GNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGV 264
            G LG                +S+ ++                          +P LV  +
Sbjct: 1576 GRLGH--------------EDSEDQL--------------------------KPKLVNAL 1595

Query: 265  E---VVDIACGFDHSLVL------GRNGVLLSCGSNVYGQLGREKQDMGMFPVDINF--- 312
            +   VVD+ACG   +  L      G + V+ S G   YG+LGR   D    P  I+    
Sbjct: 1596 KDNLVVDVACGNGDAQTLCITEGTGGSSVVWSWGDGDYGKLGRGGSDGCKVPAIIDTLMG 1655

Query: 313  -HPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPDNV--PLVVEGLE 369
             H   ++ G   SLA+ +         A G+ +WG     +LG    ++V  P ++E L 
Sbjct: 1656 KHITHVACGSQFSLALSK---------AGGVYTWGKGDYYRLGHGSDEHVRRPKLIESLR 1706

Query: 370  G 370
            G
Sbjct: 1707 G 1707



 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 55/168 (32%), Positives = 81/168 (48%), Gaps = 21/168 (12%)

Query: 26   GTAVV-SFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLP-----SDVTSVSAGHYHSLAV 79
            G++VV S+GDG  G LG        GG   +  +VP +        +T V+ G   SLA+
Sbjct: 1621 GSSVVWSWGDGDYGKLGR-------GGS--DGCKVPAIIDTLMGKHITHVACGSQFSLAL 1671

Query: 80   TNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGS 139
            +  G V+ WG+ +  +LG G+ E       PK +E L  + V       +   A  D+G 
Sbjct: 1672 SKAGGVYTWGKGDYYRLGHGSDEH---VRRPKLIESLRGMKVVEVSVGSLHCIAAVDNGD 1728

Query: 140  LWVWGKSKRGQLGLGKDITEAI-VPSRVEALAGEKIVKVSFGWGHALA 186
            ++ WG +  GQ+G G   T+A  +P  V AL G  I  VS G  H +A
Sbjct: 1729 VYTWGDNDEGQIGDG--TTQATQIPRLVAALQGHHISHVSCGSAHTVA 1774



 Score = 62.4 bits (150), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 52/185 (28%), Positives = 87/185 (47%), Gaps = 16/185 (8%)

Query: 29   VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSD-VTSVSAGH--YHSLAVTN---- 81
            + ++G G  G LG   S      D  +P  V  L  + V  V+ G+    +L +T     
Sbjct: 1567 LYTWGKGRYGRLGHEDS-----EDQLKPKLVNALKDNLVVDVACGNGDAQTLCITEGTGG 1621

Query: 82   NGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLW 141
            +  VW+WG  +  +LGRG  +       P  ++ L   ++         S A+   G ++
Sbjct: 1622 SSVVWSWGDGDYGKLGRGGSDGCKV---PAIIDTLMGKHITHVACGSQFSLALSKAGGVY 1678

Query: 142  VWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSAD 201
             WGK    +LG G D      P  +E+L G K+V+VS G  H +A  ++G ++ WG + +
Sbjct: 1679 TWGKGDYYRLGHGSD-EHVRRPKLIESLRGMKVVEVSVGSLHCIAAVDNGDVYTWGDNDE 1737

Query: 202  GRIGN 206
            G+IG+
Sbjct: 1738 GQIGD 1742



 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 71/260 (27%), Positives = 117/260 (45%), Gaps = 36/260 (13%)

Query: 138  GSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWG 197
            GS++ WG + RGQLG G +  +  +P    +LA  K +++  G       T +GK+F  G
Sbjct: 1407 GSIFGWGHNHRGQLG-GPEGAKVKIPIPCPSLAALKPIQLVGGEQTLFTVTGEGKVFATG 1465

Query: 198  YSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEK---AQKLVSEGMEKEKY--- 251
            Y A GR+G +G   ES  + + I    ES Q +  + +      + +++   E E Y   
Sbjct: 1466 YGAGGRLG-IGSN-ESVAIPTLI----ESIQHVHITQVSVNAGGKHILALSNEGEVYSWG 1519

Query: 252  -----------MPIIWEPFLVEGVE---VVDIACGFDHSLVLGRNGVLLSCGSNVYGQLG 297
                          +  P ++E +    +V +A G  HS  +   G L + G   YG+LG
Sbjct: 1520 EGVDGKLGHGNRSSLDHPRIIESLRGDLIVKVATGGSHSAAINATGGLYTWGKGRYGRLG 1579

Query: 298  REKQDMGMFPVDINFHP----VSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQL 353
             E  +  + P  +N       V ++ G G +  +C       TGG+  + SWG     +L
Sbjct: 1580 HEDSEDQLKPKLVNALKDNLVVDVACGNGDAQTLCITEG---TGGSSVVWSWGDGDYGKL 1636

Query: 354  GRMGPD--NVPLVVEGLEGE 371
            GR G D   VP +++ L G+
Sbjct: 1637 GRGGSDGCKVPAIIDTLMGK 1656


>gi|367039539|ref|XP_003650150.1| hypothetical protein THITE_2038461 [Thielavia terrestris NRRL 8126]
 gi|346997411|gb|AEO63814.1| hypothetical protein THITE_2038461 [Thielavia terrestris NRRL 8126]
          Length = 496

 Score = 94.7 bits (234), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 81/253 (32%), Positives = 114/253 (45%), Gaps = 35/253 (13%)

Query: 56  PTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEG 115
           P  VPGL S +T ++ G  H+LA+  +G VW+WG N + QLGR      AT        G
Sbjct: 231 PAPVPGL-SRITQIACGANHALALDVDGVVWSWGCNEQAQLGRRLSGRHAT---DSLTPG 286

Query: 116 LDQVNVCAAFASGVVSS-AIGDDGSLWVWGKSKRGQLGLGKDITEAIV----PSRVEALA 170
             Q+      A G   S AI     +W WG +  G+ G  K      V    P +V AL 
Sbjct: 287 PVQIRDVKYVACGDYHSLAIDKKDQVWAWGLNSFGEAGYAKGAGTGDVVLPFPMKVPALR 346

Query: 171 GEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEI 230
           G+ +V ++ G  H+ A T DG+   WG   DG  G LG A                    
Sbjct: 347 GKSVVCLAGGSHHSAAVTADGQCLVWG-RLDG--GQLGIAF------------------- 384

Query: 231 SSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGV-EVVDIACGFDHSLVLGRNGVLLSCG 289
           S  T+  A+++ S+   K +   I  +P  V G+  V  +ACG DH++ + R G   + G
Sbjct: 385 SPDTLRDAKRIRSDERGKPR---ICLQPTPVPGIGRVYHVACGSDHTIFITREGTAYATG 441

Query: 290 SNVYGQLGREKQD 302
            N  GQLG   +D
Sbjct: 442 FNAQGQLGLGHED 454



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 80/319 (25%), Positives = 131/319 (41%), Gaps = 54/319 (16%)

Query: 28  AVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPS--DVTSVSAGHYHSLAVTNNGAV 85
           AV+ FG+G  G LGL  ++         P   P  PS   V  ++ G  H++A+T +  +
Sbjct: 68  AVLVFGNGDAGELGLGPAVQEAARPRLNPYLNPDDPSALRVVQIACGGMHTVALTEDNRI 127

Query: 86  WAWGRNNEVQLGR-----GALESRATWNDPKRVEGLDQVNVC------AAFASGV----- 129
             WG N+   LGR     GAL  R    DP+    L+ +         +AF  G+     
Sbjct: 128 VTWGVNDNGALGRETAWVGAL--RDVDGDPEEDGELNPLEATPSPIPSSAFPPGLRFTQV 185

Query: 130 -----VSSAIGDDGSLWVWG--KSKRGQLGLGKDITEAIV-----PSRVEALAGEKIVKV 177
                 S A+   G ++ WG  K  +G    G D+   +V     P+ V  L+  +I ++
Sbjct: 186 AAGDSCSFALTATGDVYGWGTFKDPQGNERFGYDVRGQVVDRQSTPAPVPGLS--RITQI 243

Query: 178 SFGWGHALAQTEDGKLFGWGYSADGRIG------NLGKALESSPLDSNIDRSSESDQEIS 231
           + G  HALA   DG ++ WG +   ++G      +   +L   P+    D    +  +  
Sbjct: 244 ACGANHALALDVDGVVWSWGCNEQAQLGRRLSGRHATDSLTPGPVQIR-DVKYVACGDYH 302

Query: 232 SSTIEKAQKLVSEGMEK-------------EKYMPIIWEPFLVEGVEVVDIACGFDHSLV 278
           S  I+K  ++ + G+               +  +P   +   + G  VV +A G  HS  
Sbjct: 303 SLAIDKKDQVWAWGLNSFGEAGYAKGAGTGDVVLPFPMKVPALRGKSVVCLAGGSHHSAA 362

Query: 279 LGRNGVLLSCGSNVYGQLG 297
           +  +G  L  G    GQLG
Sbjct: 363 VTADGQCLVWGRLDGGQLG 381



 Score = 40.8 bits (94), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 56/235 (23%), Positives = 92/235 (39%), Gaps = 48/235 (20%)

Query: 139 SLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGE-----KIVKVSFGWGHALAQTEDGKL 193
           ++ V+G    G+LGLG  + EA  P     L  +     ++V+++ G  H +A TED ++
Sbjct: 68  AVLVFGNGDAGELGLGPAVQEAARPRLNPYLNPDDPSALRVVQIACGGMHTVALTEDNRI 127

Query: 194 FGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMP 253
             WG + +G +G     + +     ++D   E D E++      +              P
Sbjct: 128 VTWGVNDNGALGRETAWVGAL---RDVDGDPEEDGELNPLEATPS--------------P 170

Query: 254 IIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGS------------NVYGQLGREKQ 301
           I    F   G+    +A G   S  L   G +   G+            +V GQ+   + 
Sbjct: 171 IPSSAF-PPGLRFTQVAAGDSCSFALTATGDVYGWGTFKDPQGNERFGYDVRGQVVDRQS 229

Query: 302 DMGMFPVDINFHPVSISSGLGHSLAICEVRSSNVTGGARGIV-SWGWNRSSQLGR 355
                PV        I+ G  H+LA+             G+V SWG N  +QLGR
Sbjct: 230 TPA--PVPGLSRITQIACGANHALAL----------DVDGVVWSWGCNEQAQLGR 272


>gi|390472682|ref|XP_003734522.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC4 [Callithrix
           jacchus]
          Length = 1049

 Score = 94.7 bits (234), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 65/245 (26%), Positives = 114/245 (46%), Gaps = 43/245 (17%)

Query: 55  EPTRVPGLPS-DVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRV 113
           +P +V  L + ++ +VS G  H+LA+ + G V+AWG +++ QLG   L S      P+ +
Sbjct: 74  KPEQVVALDAQNIVAVSCGEAHTLALNDKGQVYAWGLDSDGQLG--LLGSEECIRVPRNI 131

Query: 114 EGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEK 173
           + L  + +         S A+     ++ WG++K GQLGLG D  +   P  +++L G  
Sbjct: 132 KSLSDIQIVQVACGYYHSLALSKASEVFCWGQNKYGQLGLGTDCKKQTSPQLIKSLLGIP 191

Query: 174 IVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSS 233
            ++V+ G  H+   T  G +FGWG +  G++G          L+                
Sbjct: 192 FMQVAAGGAHSFVLTLSGAIFGWGRNKFGQLG----------LND--------------- 226

Query: 234 TIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVY 293
                        E ++Y+P + +   +   ++V I CG DH+  L + G + + G+  Y
Sbjct: 227 -------------ENDRYVPNLLKS--LRSQKIVYICCGEDHTAALTKEGGVFTFGAGGY 271

Query: 294 GQLGR 298
           GQLG 
Sbjct: 272 GQLGH 276



 Score = 81.3 bits (199), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 61/192 (31%), Positives = 100/192 (52%), Gaps = 16/192 (8%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVP-GLPS----DVTSVSAGHYHSLAVTNNG 83
           V ++G  S G LGL      +G +  E  RVP  + S     +  V+ G+YHSLA++   
Sbjct: 105 VYAWGLDSDGQLGL------LGSE--ECIRVPRNIKSLSDIQIVQVACGYYHSLALSKAS 156

Query: 84  AVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVW 143
            V+ WG+N   QLG G    + T   P+ ++ L  +      A G  S  +   G+++ W
Sbjct: 157 EVFCWGQNKYGQLGLGTDCKKQT--SPQLIKSLLGIPFMQVAAGGAHSFVLTLSGAIFGW 214

Query: 144 GKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGR 203
           G++K GQLGL  D  +  VP+ +++L  +KIV +  G  H  A T++G +F +G    G+
Sbjct: 215 GRNKFGQLGLN-DENDRYVPNLLKSLRSQKIVYICCGEDHTAALTKEGGVFTFGAGGYGQ 273

Query: 204 IGNLGKALESSP 215
           +G+   + E +P
Sbjct: 274 LGHNSTSHEINP 285



 Score = 72.0 bits (175), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 68/273 (24%), Positives = 111/273 (40%), Gaps = 57/273 (20%)

Query: 87  AWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKS 146
            WG  +  QLG G ++      +P++ +      V         +  + DDG+++  G +
Sbjct: 3   CWGNASFGQLGLGGIDEEIVL-EPRKSDFFINKKVQDVGCGLRHTVFVLDDGTVYTCGCN 61

Query: 147 KRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGN 206
             GQLG  K   +   P +V AL  + IV VS G  H LA  + G+++ WG  +DG++G 
Sbjct: 62  DLGQLGHEKSRKK---PEQVVALDAQNIVAVSCGEAHTLALNDKGQVYAWGLDSDGQLGL 118

Query: 207 LGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEV 266
           LG   E   +  NI   S+                                      +++
Sbjct: 119 LGSE-ECIRVPRNIKSLSD--------------------------------------IQI 139

Query: 267 VDIACGFDHSLVLGRNGVLLSCGSNVYGQLG-----REKQDMGMFPVDINFHPVSISSGL 321
           V +ACG+ HSL L +   +   G N YGQLG     +++    +    +    + +++G 
Sbjct: 140 VQVACGYYHSLALSKASEVFCWGQNKYGQLGLGTDCKKQTSPQLIKSLLGIPFMQVAAGG 199

Query: 322 GHSLAICEVRSSNVTGGARGIVSWGWNRSSQLG 354
            HS  +          GA  I  WG N+  QLG
Sbjct: 200 AHSFVL-------TLSGA--IFGWGRNKFGQLG 223


>gi|296220559|ref|XP_002756357.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC4 isoform 2
           [Callithrix jacchus]
          Length = 979

 Score = 94.7 bits (234), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 78/316 (24%), Positives = 137/316 (43%), Gaps = 49/316 (15%)

Query: 55  EPTRVPGLPS-DVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRV 113
           +P +V  L + ++ +VS G  H+LA+ + G V+AWG +++ QLG   L S      P+ +
Sbjct: 74  KPEQVVALDAQNIVAVSCGEAHTLALNDKGQVYAWGLDSDGQLG--LLGSEECIRVPRNI 131

Query: 114 EGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEK 173
           + L  + +         S A+     ++ WG++K GQLGLG D  +   P  +++L G  
Sbjct: 132 KSLSDIQIVQVACGYYHSLALSKASEVFCWGQNKYGQLGLGTDCKKQTSPQLIKSLLGIP 191

Query: 174 IVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSS 233
            ++V+ G  H+   T  G +FGWG +  G++G          L+                
Sbjct: 192 FMQVAAGGAHSFVLTLSGAIFGWGRNKFGQLG----------LND--------------- 226

Query: 234 TIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVY 293
                        E ++Y+P + +   +   ++V I CG DH+  L + G + + G+  Y
Sbjct: 227 -------------ENDRYVPNLLKS--LRSQKIVYICCGEDHTAALTKEGGVFTFGAGGY 271

Query: 294 GQLGREKQDMGMFPVDINFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQL 353
           GQLG       + P  +      +   +   +A     +S     +  I S+G   + QL
Sbjct: 272 GQLGHNSTSHEINPRKV----FELMGSIVTQIACGRQHTSAFVPSSGRIYSFGLGGNGQL 327

Query: 354 GRMGPDN--VPLVVEG 367
           G     N   P  V+G
Sbjct: 328 GTGSTSNRKSPFTVKG 343



 Score = 81.3 bits (199), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 61/192 (31%), Positives = 100/192 (52%), Gaps = 16/192 (8%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVP-GLPS----DVTSVSAGHYHSLAVTNNG 83
           V ++G  S G LGL      +G +  E  RVP  + S     +  V+ G+YHSLA++   
Sbjct: 105 VYAWGLDSDGQLGL------LGSE--ECIRVPRNIKSLSDIQIVQVACGYYHSLALSKAS 156

Query: 84  AVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVW 143
            V+ WG+N   QLG G    + T   P+ ++ L  +      A G  S  +   G+++ W
Sbjct: 157 EVFCWGQNKYGQLGLGTDCKKQT--SPQLIKSLLGIPFMQVAAGGAHSFVLTLSGAIFGW 214

Query: 144 GKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGR 203
           G++K GQLGL  D  +  VP+ +++L  +KIV +  G  H  A T++G +F +G    G+
Sbjct: 215 GRNKFGQLGLN-DENDRYVPNLLKSLRSQKIVYICCGEDHTAALTKEGGVFTFGAGGYGQ 273

Query: 204 IGNLGKALESSP 215
           +G+   + E +P
Sbjct: 274 LGHNSTSHEINP 285



 Score = 71.6 bits (174), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 68/273 (24%), Positives = 111/273 (40%), Gaps = 57/273 (20%)

Query: 87  AWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKS 146
            WG  +  QLG G ++      +P++ +      V         +  + DDG+++  G +
Sbjct: 3   CWGNASFGQLGLGGIDEEIVL-EPRKSDFFINKKVQDVGCGLRHTVFVLDDGTVYTCGCN 61

Query: 147 KRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGN 206
             GQLG  K   +   P +V AL  + IV VS G  H LA  + G+++ WG  +DG++G 
Sbjct: 62  DLGQLGHEKSRKK---PEQVVALDAQNIVAVSCGEAHTLALNDKGQVYAWGLDSDGQLGL 118

Query: 207 LGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEV 266
           LG   E   +  NI   S+                                      +++
Sbjct: 119 LGSE-ECIRVPRNIKSLSD--------------------------------------IQI 139

Query: 267 VDIACGFDHSLVLGRNGVLLSCGSNVYGQLG-----REKQDMGMFPVDINFHPVSISSGL 321
           V +ACG+ HSL L +   +   G N YGQLG     +++    +    +    + +++G 
Sbjct: 140 VQVACGYYHSLALSKASEVFCWGQNKYGQLGLGTDCKKQTSPQLIKSLLGIPFMQVAAGG 199

Query: 322 GHSLAICEVRSSNVTGGARGIVSWGWNRSSQLG 354
            HS  +          GA  I  WG N+  QLG
Sbjct: 200 AHSFVL-------TLSGA--IFGWGRNKFGQLG 223


>gi|93003290|tpd|FAA00228.1| TPA: zinc finger protein [Ciona intestinalis]
          Length = 2334

 Score = 94.7 bits (234), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 102/355 (28%), Positives = 154/355 (43%), Gaps = 68/355 (19%)

Query: 26  GTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRV--PGLPSDVTSVSAGHYHSLAVTNNG 83
           G  V + G+ + G LGL      V G     T+V  P  P    +V +G  H++A+T +G
Sbjct: 480 GGKVYACGESTSGRLGL----GPVTGSVSRLTQVLFPQ-PIKKLAVHSGGRHAMALTYDG 534

Query: 84  AVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVW 143
            V++WG   E +LG G   SRA    P+++E   +  +         S+AIG  G+L+ W
Sbjct: 535 HVYSWGDGEEGKLGHG---SRADALTPRKIETFPEKCIRDISCGSSHSAAIGSSGTLYTW 591

Query: 144 GKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGW--GHALAQTEDGKLFGWGYSAD 201
           G    G+LG G + T  + P  V+AL+G+++V+V+ G      L  T+DG ++ WG   D
Sbjct: 592 GHGMYGRLGHGNNHT-LLKPKPVQALSGQQVVQVACGSRDAQTLCLTQDGLVYSWG---D 647

Query: 202 GRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLV 261
           G  G LG+                SD       +E+                       +
Sbjct: 648 GDFGKLGRG--------------GSDGCCVPKPVER-----------------------L 670

Query: 262 EGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDI----NFHPVSI 317
            G +VV I CG   SL L R G++ + G   Y +LG         P  +        V +
Sbjct: 671 SGQDVVKIECGAQFSLALSRCGLVWTWGKGDYFRLGHGSDQHVRRPQVVEGLREHKVVDV 730

Query: 318 SSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGP--DNVPLVVEGLEG 370
           + G  H LA+ E       GG   + +WG N   Q G  G   +  P+ V+GLEG
Sbjct: 731 AVGALHCLAVTE-------GGQ--VFAWGDNDHGQQGNGGTTVNRKPMKVQGLEG 776



 Score = 75.1 bits (183), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 64/196 (32%), Positives = 90/196 (45%), Gaps = 13/196 (6%)

Query: 24  ASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLP-SDVTSVSAGHY--HSLAVT 80
           +SGT + ++G G  G LG      G      +P  V  L    V  V+ G     +L +T
Sbjct: 584 SSGT-LYTWGHGMYGRLG-----HGNNHTLLKPKPVQALSGQQVVQVACGSRDAQTLCLT 637

Query: 81  NNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSL 140
            +G V++WG  +  +LGRG  +       PK VE L   +V         S A+   G +
Sbjct: 638 QDGLVYSWGDGDFGKLGRGGSDGCCV---PKPVERLSGQDVVKIECGAQFSLALSRCGLV 694

Query: 141 WVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSA 200
           W WGK    +LG G D      P  VE L   K+V V+ G  H LA TE G++F WG + 
Sbjct: 695 WTWGKGDYFRLGHGSD-QHVRRPQVVEGLREHKVVDVAVGALHCLAVTEGGQVFAWGDND 753

Query: 201 DGRIGNLGKALESSPL 216
            G+ GN G  +   P+
Sbjct: 754 HGQQGNGGTTVNRKPM 769



 Score = 71.2 bits (173), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 88/328 (26%), Positives = 146/328 (44%), Gaps = 57/328 (17%)

Query: 68   SVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFAS 127
            SV+AG  H LA++N G V++WG   + +LG G   +R++ + P+ +E L    +      
Sbjct: 1497 SVNAGGKHILALSNEGEVYSWGEGVDGKLGHG---NRSSLDHPRIIESLRGDLIVKVATG 1553

Query: 128  GVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHA--L 185
            G  S+AI   G L+ WGK + G+LG  +D  + + P  V AL    +V V+ G G A  L
Sbjct: 1554 GSHSAAINATGGLYTWGKGRYGRLG-HEDSEDQLKPKLVNALKDNLVVDVACGNGDAQTL 1612

Query: 186  AQTE----DGKLFGWGYSADGRIGNLGK---------ALESSPLDSNIDRSSESDQEISS 232
              TE       ++ WG   DG  G LG+         A+  + +  +I   +   Q   S
Sbjct: 1613 CITEGTGGSSVVWSWG---DGDYGKLGRGGSDGCKVPAIIDTLMGKHITHVACGSQ--FS 1667

Query: 233  STIEKAQKLVSEGMEKEKYMPI-------IWEPFLVE---GVEVVDIACGFDHSLVLGRN 282
              + KA  + + G  K  Y  +       +  P L+E   G++VV+++ G  H +    N
Sbjct: 1668 LALSKAGGVYTWG--KGDYYRLGHGSDEHVRRPKLIESLRGMKVVEVSVGSLHCIAAVDN 1725

Query: 283  GVLLSCGSNVYGQLGREKQDMGMFPVDINFHPVSISSGLGHSLAICEVRSSNVTGGARGI 342
            G + + G N  GQ+G                P  +++  GH +       S+V+ G+   
Sbjct: 1726 GDVYTWGDNDEGQIGDGTTQATQI-------PRLVAALQGHHI-------SHVSCGSAHT 1771

Query: 343  VSW-------GWNRSSQLGRMGPDNVPL 363
            V+W         ++  + G   PD +PL
Sbjct: 1772 VAWSLPSESHNMHKRRRTGAKLPDQIPL 1799



 Score = 64.7 bits (156), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 76/297 (25%), Positives = 115/297 (38%), Gaps = 64/297 (21%)

Query: 85  VWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWG 144
           V+ WG N++ QLG        T   P   + L ++ V           A+   G ++  G
Sbjct: 431 VFVWGLNDKDQLGGLKGSKHKT---PVASKDLQRLKVTQVIGGSKSLFAVTMGGKVYACG 487

Query: 145 KSKRGQLGLG------KDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGY 198
           +S  G+LGLG        +T+ + P  ++ LA      V  G  HA+A T DG ++ WG 
Sbjct: 488 ESTSGRLGLGPVTGSVSRLTQVLFPQPIKKLA------VHSGGRHAMALTYDGHVYSWGD 541

Query: 199 SADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEP 258
             +G++G+  +A      D+   R  E+  E                             
Sbjct: 542 GEEGKLGHGSRA------DALTPRKIETFPEKC--------------------------- 568

Query: 259 FLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFHPVSIS 318
                  + DI+CG  HS  +G +G L + G  +YG+LG       + P      PV   
Sbjct: 569 -------IRDISCGSSHSAAIGSSGTLYTWGHGMYGRLGHGNNHTLLKP-----KPVQAL 616

Query: 319 SGLGHSLAICEVRSSNVTGGARG--IVSWGWNRSSQLGRMGPDN--VPLVVEGLEGE 371
           SG       C  R +      +   + SWG     +LGR G D   VP  VE L G+
Sbjct: 617 SGQQVVQVACGSRDAQTLCLTQDGLVYSWGDGDFGKLGRGGSDGCCVPKPVERLSGQ 673



 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 94/361 (26%), Positives = 147/361 (40%), Gaps = 79/361 (21%)

Query: 28   AVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPS-DVTSVSAGHYHSLAVTNNGAVW 86
            ++  +G   +G LG P      G     P   P L +     +  G      VT  G V+
Sbjct: 1407 SIFGWGHNHRGQLGGPE-----GAKVKIPIPCPSLAALKPIQLVGGEQTLFTVTGEGKVF 1461

Query: 87   AWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVC--AAFASGVVSSAIGDDGSLWVWG 144
            A G     +LG G+ ES A    P  +E +  V++   +  A G    A+ ++G ++ WG
Sbjct: 1462 ATGYGAGGRLGIGSNESVAI---PTLIESIQHVHITQVSVNAGGKHILALSNEGEVYSWG 1518

Query: 145  KSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRI 204
            +   G+LG G + +    P  +E+L G+ IVKV+ G  H+ A    G L+ WG    GR 
Sbjct: 1519 EGVDGKLGHG-NRSSLDHPRIIESLRGDLIVKVATGGSHSAAINATGGLYTWG---KGRY 1574

Query: 205  GNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGV 264
            G LG                +S+ ++                          +P LV  +
Sbjct: 1575 GRLGH--------------EDSEDQL--------------------------KPKLVNAL 1594

Query: 265  E---VVDIACGFDHSLVL------GRNGVLLSCGSNVYGQLGREKQDMGMFPVDINF--- 312
            +   VVD+ACG   +  L      G + V+ S G   YG+LGR   D    P  I+    
Sbjct: 1595 KDNLVVDVACGNGDAQTLCITEGTGGSSVVWSWGDGDYGKLGRGGSDGCKVPAIIDTLMG 1654

Query: 313  -HPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPDNV--PLVVEGLE 369
             H   ++ G   SLA+ +         A G+ +WG     +LG    ++V  P ++E L 
Sbjct: 1655 KHITHVACGSQFSLALSK---------AGGVYTWGKGDYYRLGHGSDEHVRRPKLIESLR 1705

Query: 370  G 370
            G
Sbjct: 1706 G 1706



 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 55/168 (32%), Positives = 81/168 (48%), Gaps = 21/168 (12%)

Query: 26   GTAVV-SFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLP-----SDVTSVSAGHYHSLAV 79
            G++VV S+GDG  G LG        GG   +  +VP +        +T V+ G   SLA+
Sbjct: 1620 GSSVVWSWGDGDYGKLGR-------GGS--DGCKVPAIIDTLMGKHITHVACGSQFSLAL 1670

Query: 80   TNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGS 139
            +  G V+ WG+ +  +LG G+ E       PK +E L  + V       +   A  D+G 
Sbjct: 1671 SKAGGVYTWGKGDYYRLGHGSDEH---VRRPKLIESLRGMKVVEVSVGSLHCIAAVDNGD 1727

Query: 140  LWVWGKSKRGQLGLGKDITEAI-VPSRVEALAGEKIVKVSFGWGHALA 186
            ++ WG +  GQ+G G   T+A  +P  V AL G  I  VS G  H +A
Sbjct: 1728 VYTWGDNDEGQIGDG--TTQATQIPRLVAALQGHHISHVSCGSAHTVA 1773



 Score = 62.4 bits (150), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 52/185 (28%), Positives = 87/185 (47%), Gaps = 16/185 (8%)

Query: 29   VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSD-VTSVSAGH--YHSLAVTN---- 81
            + ++G G  G LG   S      D  +P  V  L  + V  V+ G+    +L +T     
Sbjct: 1566 LYTWGKGRYGRLGHEDS-----EDQLKPKLVNALKDNLVVDVACGNGDAQTLCITEGTGG 1620

Query: 82   NGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLW 141
            +  VW+WG  +  +LGRG  +       P  ++ L   ++         S A+   G ++
Sbjct: 1621 SSVVWSWGDGDYGKLGRGGSDGCKV---PAIIDTLMGKHITHVACGSQFSLALSKAGGVY 1677

Query: 142  VWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSAD 201
             WGK    +LG G D      P  +E+L G K+V+VS G  H +A  ++G ++ WG + +
Sbjct: 1678 TWGKGDYYRLGHGSD-EHVRRPKLIESLRGMKVVEVSVGSLHCIAAVDNGDVYTWGDNDE 1736

Query: 202  GRIGN 206
            G+IG+
Sbjct: 1737 GQIGD 1741



 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 71/260 (27%), Positives = 117/260 (45%), Gaps = 36/260 (13%)

Query: 138  GSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWG 197
            GS++ WG + RGQLG G +  +  +P    +LA  K +++  G       T +GK+F  G
Sbjct: 1406 GSIFGWGHNHRGQLG-GPEGAKVKIPIPCPSLAALKPIQLVGGEQTLFTVTGEGKVFATG 1464

Query: 198  YSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEK---AQKLVSEGMEKEKY--- 251
            Y A GR+G +G   ES  + + I    ES Q +  + +      + +++   E E Y   
Sbjct: 1465 YGAGGRLG-IGSN-ESVAIPTLI----ESIQHVHITQVSVNAGGKHILALSNEGEVYSWG 1518

Query: 252  -----------MPIIWEPFLVEGVE---VVDIACGFDHSLVLGRNGVLLSCGSNVYGQLG 297
                          +  P ++E +    +V +A G  HS  +   G L + G   YG+LG
Sbjct: 1519 EGVDGKLGHGNRSSLDHPRIIESLRGDLIVKVATGGSHSAAINATGGLYTWGKGRYGRLG 1578

Query: 298  REKQDMGMFPVDINFHP----VSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQL 353
             E  +  + P  +N       V ++ G G +  +C       TGG+  + SWG     +L
Sbjct: 1579 HEDSEDQLKPKLVNALKDNLVVDVACGNGDAQTLCITEG---TGGSSVVWSWGDGDYGKL 1635

Query: 354  GRMGPD--NVPLVVEGLEGE 371
            GR G D   VP +++ L G+
Sbjct: 1636 GRGGSDGCKVPAIIDTLMGK 1655


>gi|332218229|ref|XP_003258261.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC4 isoform 3
           [Nomascus leucogenys]
          Length = 979

 Score = 94.7 bits (234), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 78/316 (24%), Positives = 137/316 (43%), Gaps = 49/316 (15%)

Query: 55  EPTRVPGLPS-DVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRV 113
           +P +V  L + ++ +VS G  H+LA+ + G V+AWG +++ QLG   L S      P+ +
Sbjct: 74  KPEQVVALDAQNIVAVSCGEAHTLALNDKGQVYAWGLDSDGQLG--LLGSEECIRVPRNI 131

Query: 114 EGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEK 173
           + L  + +         S A+     ++ WG++K GQLGLG D  +   P  +++L G  
Sbjct: 132 KSLSDIQIVQVACGYYHSLALSKASEVFCWGQNKYGQLGLGTDCKKQTSPQLLKSLVGIP 191

Query: 174 IVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSS 233
            ++V+ G  H+   T  G +FGWG +  G++G          L+                
Sbjct: 192 FMQVAAGGAHSFVLTLSGAIFGWGRNKFGQLG----------LND--------------- 226

Query: 234 TIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVY 293
                        E ++Y+P + +   +   ++V I CG DH+  L + G + + G+  Y
Sbjct: 227 -------------ENDRYVPNLLKS--LRSQKIVYICCGEDHTAALTKEGGVFTFGAGGY 271

Query: 294 GQLGREKQDMGMFPVDINFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQL 353
           GQLG       + P  +      +   +   +A     +S     +  I S+G   + QL
Sbjct: 272 GQLGHNSTSHEINPRKV----FELMGSIVTQIACGRQHTSAFVPSSGRIYSFGLGGNGQL 327

Query: 354 GRMGPDN--VPLVVEG 367
           G     N   P  V+G
Sbjct: 328 GTGSTSNRKSPFTVKG 343



 Score = 80.5 bits (197), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 61/192 (31%), Positives = 100/192 (52%), Gaps = 16/192 (8%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVP-GLPS----DVTSVSAGHYHSLAVTNNG 83
           V ++G  S G LGL      +G +  E  RVP  + S     +  V+ G+YHSLA++   
Sbjct: 105 VYAWGLDSDGQLGL------LGSE--ECIRVPRNIKSLSDIQIVQVACGYYHSLALSKAS 156

Query: 84  AVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVW 143
            V+ WG+N   QLG G    + T   P+ ++ L  +      A G  S  +   G+++ W
Sbjct: 157 EVFCWGQNKYGQLGLGTDCKKQT--SPQLLKSLVGIPFMQVAAGGAHSFVLTLSGAIFGW 214

Query: 144 GKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGR 203
           G++K GQLGL  D  +  VP+ +++L  +KIV +  G  H  A T++G +F +G    G+
Sbjct: 215 GRNKFGQLGLN-DENDRYVPNLLKSLRSQKIVYICCGEDHTAALTKEGGVFTFGAGGYGQ 273

Query: 204 IGNLGKALESSP 215
           +G+   + E +P
Sbjct: 274 LGHNSTSHEINP 285



 Score = 72.4 bits (176), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 68/273 (24%), Positives = 111/273 (40%), Gaps = 57/273 (20%)

Query: 87  AWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKS 146
            WG  +  QLG G ++      +P++ +      V         +  + DDG+++  G +
Sbjct: 3   CWGNASFGQLGLGGIDEEIVL-EPRKSDFFINKKVRDVGCGLRHTVFVLDDGTVYTCGCN 61

Query: 147 KRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGN 206
             GQLG  K   +   P +V AL  + IV VS G  H LA  + G+++ WG  +DG++G 
Sbjct: 62  DLGQLGHEKSRKK---PEQVVALDAQNIVAVSCGEAHTLALNDKGQVYAWGLDSDGQLGL 118

Query: 207 LGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEV 266
           LG   E   +  NI   S+                                      +++
Sbjct: 119 LGSE-ECIRVPRNIKSLSD--------------------------------------IQI 139

Query: 267 VDIACGFDHSLVLGRNGVLLSCGSNVYGQLG-----REKQDMGMFPVDINFHPVSISSGL 321
           V +ACG+ HSL L +   +   G N YGQLG     +++    +    +    + +++G 
Sbjct: 140 VQVACGYYHSLALSKASEVFCWGQNKYGQLGLGTDCKKQTSPQLLKSLVGIPFMQVAAGG 199

Query: 322 GHSLAICEVRSSNVTGGARGIVSWGWNRSSQLG 354
            HS  +          GA  I  WG N+  QLG
Sbjct: 200 AHSFVL-------TLSGA--IFGWGRNKFGQLG 223


>gi|391344902|ref|XP_003746733.1| PREDICTED: LOW QUALITY PROTEIN: RCC1 and BTB domain-containing
           protein 1-like [Metaseiulus occidentalis]
          Length = 550

 Score = 94.7 bits (234), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 67/221 (30%), Positives = 112/221 (50%), Gaps = 14/221 (6%)

Query: 49  VGGDAYEPTRVPGLPSD---VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRA 105
           VG D       P L  D   V  ++ G YHS+  T +G V+ WG+NN  QLG   L +  
Sbjct: 129 VGNDQNSQANSPVLVFDRQPVAQIACGGYHSVIRTVSGGVYTWGQNNCGQLG---LSASV 185

Query: 106 TWNDPKRVEGLDQVNVCAAFASGV-VSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPS 164
               P++V G      C   + G   ++A+ D G ++VWG +  GQLGLG  +T    P 
Sbjct: 186 NHQSPRKVGGAIAEMKCTGISCGHNFTTAVFDTGEVYVWGSNGNGQLGLG-SLTNQPFPV 244

Query: 165 RVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSP-----LDSN 219
           ++E L    I KV+ G+ H LA T++G ++ WG +A G++G   K  +S P     +   
Sbjct: 245 KIEQLKDVFIKKVACGFSHTLALTDEGLVYVWGANALGQLGTENKTNQSIPVLMKTIHGR 304

Query: 220 IDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWE-PF 259
           I+  + +    +S+ + +  K++  G+ + +++ +  E PF
Sbjct: 305 INEVAATQYNQTSAAMTETSKVLMWGLCRGQHVTVPTETPF 345



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 71/290 (24%), Positives = 124/290 (42%), Gaps = 51/290 (17%)

Query: 112 RVEGLDQVNVCAAFASGVVSSA-IGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALA 170
           + E L +V +C  F+S    +  + ++  +W  G +  G LG+G D    + P++VE L+
Sbjct: 36  KPEFLRKVRLCCVFSSSATEALLVTEEDEVWAMGSNAAGCLGIG-DTRSCLSPTKVEGLS 94

Query: 171 GEKIVKVSFGWG-HALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQE 229
            + +   + G G H LA T  G+++GWG++   ++GN   +  +SP+    DR   +  +
Sbjct: 95  KKGVQSFACGTGPHVLALTARGEVYGWGHNGYSQVGNDQNSQANSPVLV-FDRQPVA--Q 151

Query: 230 ISSSTIEKAQKLVSEGMEKEKYMPIIW-----------------EPFLVEG----VEVVD 268
           I+        + VS G+         W                  P  V G    ++   
Sbjct: 152 IACGGYHSVIRTVSGGV-------YTWGQNNCGQLGLSASVNHQSPRKVGGAIAEMKCTG 204

Query: 269 IACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDI----NFHPVSISSGLGHS 324
           I+CG + +  +   G +   GSN  GQLG        FPV I    +     ++ G  H+
Sbjct: 205 ISCGHNFTTAVFDTGEVYVWGSNGNGQLGLGSLTNQPFPVKIEQLKDVFIKKVACGFSHT 264

Query: 325 LAICEVRSSNVTGGARGIVS-WGWNRSSQLGRMGPDN--VPLVVEGLEGE 371
           LA+ +           G+V  WG N   QLG     N  +P++++ + G 
Sbjct: 265 LALTD----------EGLVYVWGANALGQLGTENKTNQSIPVLMKTIHGR 304



 Score = 59.3 bits (142), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 65/253 (25%), Positives = 113/253 (44%), Gaps = 32/253 (12%)

Query: 76  SLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSS--A 133
           +L VT    VWA G N    LG G  ++R+  + P +VEGL +  V  +FA G      A
Sbjct: 56  ALLVTEEDEVWAMGSNAAGCLGIG--DTRSCLS-PTKVEGLSKKGV-QSFACGTGPHVLA 111

Query: 134 IGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKL 193
           +   G ++ WG +   Q+G  ++ ++A  P  V     + + +++ G  H++ +T  G +
Sbjct: 112 LTARGEVYGWGHNGYSQVGNDQN-SQANSP--VLVFDRQPVAQIACGGYHSVIRTVSGGV 168

Query: 194 FGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEK-EKYM 252
           + WG +  G++G        SP      +   +  E+  + I       +   +  E Y+
Sbjct: 169 YTWGQNNCGQLGLSASVNHQSP-----RKVGGAIAEMKCTGISCGHNFTTAVFDTGEVYV 223

Query: 253 ------------PIIWEPFLVEGVEVVD-----IACGFDHSLVLGRNGVLLSCGSNVYGQ 295
                        +  +PF V+  ++ D     +ACGF H+L L   G++   G+N  GQ
Sbjct: 224 WGSNGNGQLGLGSLTNQPFPVKIEQLKDVFIKKVACGFSHTLALTDEGLVYVWGANALGQ 283

Query: 296 LGREKQDMGMFPV 308
           LG E +     PV
Sbjct: 284 LGTENKTNQSIPV 296


>gi|54261597|gb|AAH84600.1| LOC495281 protein, partial [Xenopus laevis]
          Length = 1031

 Score = 94.7 bits (234), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 82/321 (25%), Positives = 140/321 (43%), Gaps = 59/321 (18%)

Query: 55  EPTRVPGLPSD-VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRV 113
           +P +V  L +  + +VS G  H+LA+ + G V++WG     Q+G    E       P+ +
Sbjct: 58  KPDQVGALDAQTIVAVSCGEAHTLALNDKGQVFSWGHAAHGQIGLSVAEDYI--RVPRNI 115

Query: 114 EGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEK 173
           + L  + +         S A+  +  ++ WG+++ GQLGLG +I +   P  +++LAG  
Sbjct: 116 KSLYDIQIVQVACGHHHSLALSKESDIYSWGQNQYGQLGLGSEIKKESAPRHIKSLAGIP 175

Query: 174 IVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSS 233
              ++ G GH+ A T  G +FGWG +  G++G          L+   DRS+ +       
Sbjct: 176 FAHIAAGGGHSFALTMSGAIFGWGRNKFGQLG----------LNDETDRSAPA------- 218

Query: 234 TIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVY 293
                   + + +  +K               ++ I CG DH+  L + G + + G+  Y
Sbjct: 219 --------LLKSLRSQK---------------IIHICCGEDHTAALTKEGGVFTFGAGGY 255

Query: 294 GQLGREKQDMGMFPVDINFHPV-----SISSGLGHSLAICEVRSSNVTGGARGIVSWGWN 348
           GQLG    +  + P  + F  +      I+ G  H+LA        V    R I S+G  
Sbjct: 256 GQLGHNSTNHEVNPRKV-FELMGSIVTQIACGRQHTLAF-------VPSSGR-IYSFGLG 306

Query: 349 RSSQLGRMGPDN--VPLVVEG 367
            + QLG     N   P  V+G
Sbjct: 307 GNGQLGTGSTSNRKSPFTVKG 327



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 72/257 (28%), Positives = 104/257 (40%), Gaps = 68/257 (26%)

Query: 109 DPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEA 168
           +P+R +     NV         +  + DDG+++  G +  GQLG  K   +   P +V A
Sbjct: 8   EPRRCDFFINKNVRDVGCGSRHTVFVLDDGTVYTCGCNDLGQLGHDKSRKK---PDQVGA 64

Query: 169 LAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQ 228
           L  + IV VS G  H LA  + G++F WG++A G+IG L  A +   +  NI        
Sbjct: 65  LDAQTIVAVSCGEAHTLALNDKGQVFSWGHAAHGQIG-LSVAEDYIRVPRNI-------- 115

Query: 229 EISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSC 288
                              K  Y            +++V +ACG  HSL L +   + S 
Sbjct: 116 -------------------KSLY-----------DIQIVQVACGHHHSLALSKESDIYSW 145

Query: 289 GSNVYGQLG-----------REKQDMGMFPVDINFHPVSISSGLGHSLAICEVRSSNVTG 337
           G N YGQLG           R  + +   P         I++G GHS A+          
Sbjct: 146 GQNQYGQLGLGSEIKKESAPRHIKSLAGIPF------AHIAAGGGHSFAL-------TMS 192

Query: 338 GARGIVSWGWNRSSQLG 354
           GA  I  WG N+  QLG
Sbjct: 193 GA--IFGWGRNKFGQLG 207


>gi|355562563|gb|EHH19157.1| hypothetical protein EGK_19807 [Macaca mulatta]
          Length = 1054

 Score = 94.7 bits (234), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 65/245 (26%), Positives = 114/245 (46%), Gaps = 43/245 (17%)

Query: 55  EPTRVPGLPS-DVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRV 113
           +P +V  L + ++ +VS G  H+LA+ + G V+AWG +++ QLG   L S      P+ +
Sbjct: 74  KPEQVVALDAQNIVAVSCGEAHTLALNDKGQVYAWGLDSDGQLG--LLGSEECIRVPRNI 131

Query: 114 EGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEK 173
           + L  + +         S A+     ++ WG++K GQLGLG D  +   P  +++L G  
Sbjct: 132 KSLSDIQIIQVACGYYHSLALSKASEVFCWGQNKYGQLGLGTDCKKQTSPQLIKSLLGIP 191

Query: 174 IVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSS 233
            ++V+ G  H+   T  G +FGWG +  G++G          L+                
Sbjct: 192 FMQVAAGGAHSFVLTLSGAIFGWGRNKFGQLG----------LND--------------- 226

Query: 234 TIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVY 293
                        E ++Y+P + +   +   ++V I CG DH+  L + G + + G+  Y
Sbjct: 227 -------------ENDRYVPNLLKS--LRSQKIVYICCGEDHTAALTKEGGVFTFGAGGY 271

Query: 294 GQLGR 298
           GQLG 
Sbjct: 272 GQLGH 276



 Score = 80.9 bits (198), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 61/192 (31%), Positives = 100/192 (52%), Gaps = 16/192 (8%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVP-GLPS----DVTSVSAGHYHSLAVTNNG 83
           V ++G  S G LGL      +G +  E  RVP  + S     +  V+ G+YHSLA++   
Sbjct: 105 VYAWGLDSDGQLGL------LGSE--ECIRVPRNIKSLSDIQIIQVACGYYHSLALSKAS 156

Query: 84  AVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVW 143
            V+ WG+N   QLG G    + T   P+ ++ L  +      A G  S  +   G+++ W
Sbjct: 157 EVFCWGQNKYGQLGLGTDCKKQT--SPQLIKSLLGIPFMQVAAGGAHSFVLTLSGAIFGW 214

Query: 144 GKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGR 203
           G++K GQLGL  D  +  VP+ +++L  +KIV +  G  H  A T++G +F +G    G+
Sbjct: 215 GRNKFGQLGLN-DENDRYVPNLLKSLRSQKIVYICCGEDHTAALTKEGGVFTFGAGGYGQ 273

Query: 204 IGNLGKALESSP 215
           +G+   + E +P
Sbjct: 274 LGHNSTSHEINP 285



 Score = 71.2 bits (173), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 67/275 (24%), Positives = 112/275 (40%), Gaps = 57/275 (20%)

Query: 85  VWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWG 144
           +  WG  +  QLG G ++      +P++ +      V         +  + DDG+++  G
Sbjct: 1   MLCWGNASFGQLGLGGIDEEIVL-EPRKSDFFINKKVRDVGCGLRHTVFVLDDGTVYTCG 59

Query: 145 KSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRI 204
            +  GQLG  K   +   P +V AL  + IV VS G  H LA  + G+++ WG  +DG++
Sbjct: 60  CNDLGQLGHEKSRKK---PEQVVALDAQNIVAVSCGEAHTLALNDKGQVYAWGLDSDGQL 116

Query: 205 GNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGV 264
           G LG   E   +  NI   S+                                      +
Sbjct: 117 GLLGSE-ECIRVPRNIKSLSD--------------------------------------I 137

Query: 265 EVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLG-----REKQDMGMFPVDINFHPVSISS 319
           +++ +ACG+ HSL L +   +   G N YGQLG     +++    +    +    + +++
Sbjct: 138 QIIQVACGYYHSLALSKASEVFCWGQNKYGQLGLGTDCKKQTSPQLIKSLLGIPFMQVAA 197

Query: 320 GLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLG 354
           G  HS  +          GA  I  WG N+  QLG
Sbjct: 198 GGAHSFVL-------TLSGA--IFGWGRNKFGQLG 223


>gi|218780737|ref|YP_002432055.1| chromosome condensation regulator RCC1 [Desulfatibacillum
            alkenivorans AK-01]
 gi|218762121|gb|ACL04587.1| regulator of chromosome condensation RCC1 [Desulfatibacillum
            alkenivorans AK-01]
          Length = 2130

 Score = 94.7 bits (234), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 97/327 (29%), Positives = 142/327 (43%), Gaps = 48/327 (14%)

Query: 64   SDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCA 123
            S  T+ +AG  H+LA+  +G++WAWG NN  QLG G+ E+RA    P R+       V A
Sbjct: 1314 SPATAFAAGAEHALAIAPDGSLWAWGANNAGQLGDGSTENRAK---PVRIGEDSDWRVVA 1370

Query: 124  AFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGH 183
              A    S AI  DGSLW WG++  GQLGLG D  +   P+RV A A      +  G  H
Sbjct: 1371 --ADNYFSMAIKSDGSLWAWGQNYYGQLGLG-DAEDRHEPARVGASA--DWASIGAGTNH 1425

Query: 184  ALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDR-------------SSESDQEI 230
             LA  +DG L+ WG +  G++G   K  +S+P+    D              + ++D  +
Sbjct: 1426 VLAVKKDGSLWAWGLNNGGQLGLGSKENQSAPVQVGTDNDWLCAAAGSVHGAALKTDGSV 1485

Query: 231  SS----------STIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLG 280
             +          +T  +     S+G E E      W+  L  G + +D     + SL   
Sbjct: 1486 RTWGNNYYGQLGTTTAQEALTPSQGTEYE------WKA-LTYGNQFIDAGNTTNASLT-- 1536

Query: 281  RNGVLLSCGSNVYGQLGREKQDMGMFPVDINFHPVSISSGLGHSLAICEVRSSNVTGGAR 340
             +G L   G N  GQ+G  +  +  +       P  I        A C   S+   GG  
Sbjct: 1537 SDGALYLWGDNYSGQIGDGETSLKRWSA-TQIAPYDIWLA-----ASCGSASTVAIGGDN 1590

Query: 341  GIVSWGWNRSSQLG--RMGPDNVPLVV 365
             + SWG     Q       P+N+P+ V
Sbjct: 1591 SLWSWGSLSHFQPSGIEYAPENIPVPV 1617



 Score = 80.9 bits (198), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 91/293 (31%), Positives = 135/293 (46%), Gaps = 31/293 (10%)

Query: 21   MRSASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVT 80
            M   S  ++ ++G    G LGL     G   D +EP RV G  +D  S+ AG  H LAV 
Sbjct: 1377 MAIKSDGSLWAWGQNYYGQLGL-----GDAEDRHEPARV-GASADWASIGAGTNHVLAVK 1430

Query: 81   NNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSL 140
             +G++WAWG NN  QLG G+ E+++    P +V G D   +CAA A  V  +A+  DGS+
Sbjct: 1431 KDGSLWAWGLNNGGQLGLGSKENQSA---PVQV-GTDNDWLCAA-AGSVHGAALKTDGSV 1485

Query: 141  WVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVK----VSFGWGHALAQTEDGKLFGW 196
              WG +  GQLG      EA+ PS+      + +      +  G     + T DG L+ W
Sbjct: 1486 RTWGNNYYGQLGTTT-AQEALTPSQGTEYEWKALTYGNQFIDAGNTTNASLTSDGALYLW 1544

Query: 197  GYSADGRIGNLGKALES------SPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKE- 249
            G +  G+IG+   +L+       +P D  +  S  S    S+  I     L S G     
Sbjct: 1545 GDNYSGQIGDGETSLKRWSATQIAPYDIWLAASCGS---ASTVAIGGDNSLWSWGSLSHF 1601

Query: 250  -----KYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLG 297
                 +Y P      + E  + + +  G +  +    +G L S G+N YGQLG
Sbjct: 1602 QPSGIEYAPENIPVPVGEAKDWIAVDAGANFCIAQKSDGSLWSWGTNQYGQLG 1654



 Score = 51.2 bits (121), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 55/192 (28%), Positives = 86/192 (44%), Gaps = 15/192 (7%)

Query: 28   AVVSFGDGSQGALGLPTS---LTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGA 84
            +V ++G+   G LG  T+   LT   G  YE      L      + AG+  + ++T++GA
Sbjct: 1484 SVRTWGNNYYGQLGTTTAQEALTPSQGTEYE---WKALTYGNQFIDAGNTTNASLTSDGA 1540

Query: 85   VWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSS-AIGDDGSLWVW 143
            ++ WG N   Q+G G   S   W+  +    +   ++  A + G  S+ AIG D SLW W
Sbjct: 1541 LYLWGDNYSGQIGDGET-SLKRWSATQ----IAPYDIWLAASCGSASTVAIGGDNSLWSW 1595

Query: 144  GKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGR 203
            G     Q   G +     +P  V     +  + V  G    +AQ  DG L+ WG +  G+
Sbjct: 1596 GSLSHFQPS-GIEYAPENIP--VPVGEAKDWIAVDAGANFCIAQKSDGSLWSWGTNQYGQ 1652

Query: 204  IGNLGKALESSP 215
            +G   K  E  P
Sbjct: 1653 LGTGTKTAEYEP 1664


>gi|395820632|ref|XP_003783667.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC4 [Otolemur
           garnettii]
          Length = 1049

 Score = 94.7 bits (234), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 65/245 (26%), Positives = 114/245 (46%), Gaps = 43/245 (17%)

Query: 55  EPTRVPGLPS-DVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRV 113
           +P +V  L + ++ +VS G  H+LA+ + G V+AWG +++ QLG   L S      P+ +
Sbjct: 74  KPEQVVALDAQNIVAVSCGEAHTLALNDKGQVYAWGLDSDGQLG--LLGSEECIRVPRNI 131

Query: 114 EGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEK 173
           + L  + +         S A+     ++ WG++K GQLGLG D  +   P  +++L G  
Sbjct: 132 KSLSDIQIVQVACGYYHSLALSKASEVFCWGQNKYGQLGLGLDCKKQTSPQLIKSLVGIP 191

Query: 174 IVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSS 233
            ++V+ G  H+   T  G +FGWG +  G++G          L+                
Sbjct: 192 FMQVAAGGAHSFVLTLSGAIFGWGRNKFGQLG----------LND--------------- 226

Query: 234 TIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVY 293
                        E ++Y+P + +   +   ++V I CG DH+  L + G + + G+  Y
Sbjct: 227 -------------ENDRYVPNLLKS--LRSQKIVYICCGEDHTAALTKEGGVFTFGAGGY 271

Query: 294 GQLGR 298
           GQLG 
Sbjct: 272 GQLGH 276



 Score = 80.9 bits (198), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 61/192 (31%), Positives = 100/192 (52%), Gaps = 16/192 (8%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVP-GLPS----DVTSVSAGHYHSLAVTNNG 83
           V ++G  S G LGL      +G +  E  RVP  + S     +  V+ G+YHSLA++   
Sbjct: 105 VYAWGLDSDGQLGL------LGSE--ECIRVPRNIKSLSDIQIVQVACGYYHSLALSKAS 156

Query: 84  AVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVW 143
            V+ WG+N   QLG G    + T   P+ ++ L  +      A G  S  +   G+++ W
Sbjct: 157 EVFCWGQNKYGQLGLGLDCKKQT--SPQLIKSLVGIPFMQVAAGGAHSFVLTLSGAIFGW 214

Query: 144 GKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGR 203
           G++K GQLGL  D  +  VP+ +++L  +KIV +  G  H  A T++G +F +G    G+
Sbjct: 215 GRNKFGQLGLN-DENDRYVPNLLKSLRSQKIVYICCGEDHTAALTKEGGVFTFGAGGYGQ 273

Query: 204 IGNLGKALESSP 215
           +G+   + E +P
Sbjct: 274 LGHNSTSHEINP 285



 Score = 72.0 bits (175), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 68/273 (24%), Positives = 111/273 (40%), Gaps = 57/273 (20%)

Query: 87  AWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKS 146
            WG  +  QLG G ++      +P++ +      V         +  + DDG+++  G +
Sbjct: 3   CWGNASFGQLGLGGIDEEIVL-EPRKSDFFINKKVRDVGCGLRHTVFVLDDGTVYTCGCN 61

Query: 147 KRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGN 206
             GQLG  K   +   P +V AL  + IV VS G  H LA  + G+++ WG  +DG++G 
Sbjct: 62  DLGQLGHEKSRKK---PEQVVALDAQNIVAVSCGEAHTLALNDKGQVYAWGLDSDGQLGL 118

Query: 207 LGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEV 266
           LG   E   +  NI   S+                                      +++
Sbjct: 119 LGSE-ECIRVPRNIKSLSD--------------------------------------IQI 139

Query: 267 VDIACGFDHSLVLGRNGVLLSCGSNVYGQLG-----REKQDMGMFPVDINFHPVSISSGL 321
           V +ACG+ HSL L +   +   G N YGQLG     +++    +    +    + +++G 
Sbjct: 140 VQVACGYYHSLALSKASEVFCWGQNKYGQLGLGLDCKKQTSPQLIKSLVGIPFMQVAAGG 199

Query: 322 GHSLAICEVRSSNVTGGARGIVSWGWNRSSQLG 354
            HS  +          GA  I  WG N+  QLG
Sbjct: 200 AHSFVL-------TLSGA--IFGWGRNKFGQLG 223


>gi|403273883|ref|XP_003928727.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC4 isoform 1
           [Saimiri boliviensis boliviensis]
          Length = 1049

 Score = 94.7 bits (234), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 65/245 (26%), Positives = 114/245 (46%), Gaps = 43/245 (17%)

Query: 55  EPTRVPGLPS-DVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRV 113
           +P +V  L + ++ +VS G  H+LA+ + G V+AWG +++ QLG   L S      P+ +
Sbjct: 74  KPEQVVALDAQNIVAVSCGEAHTLALNDKGQVYAWGLDSDGQLG--LLGSEECIRVPRNI 131

Query: 114 EGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEK 173
           + L  + +         S A+     ++ WG++K GQLGLG D  +   P  +++L G  
Sbjct: 132 KSLSDIQIVQVACGYYHSLALSKASEVFCWGQNKYGQLGLGTDCKKQTSPQLIKSLLGIP 191

Query: 174 IVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSS 233
            ++V+ G  H+   T  G +FGWG +  G++G          L+                
Sbjct: 192 FMQVAAGGAHSFVLTLSGAIFGWGRNKFGQLG----------LND--------------- 226

Query: 234 TIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVY 293
                        E ++Y+P + +   +   ++V I CG DH+  L + G + + G+  Y
Sbjct: 227 -------------ENDRYVPNLLKS--LRSQKIVYICCGEDHTAALTKEGGVFTFGAGGY 271

Query: 294 GQLGR 298
           GQLG 
Sbjct: 272 GQLGH 276



 Score = 81.3 bits (199), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 61/192 (31%), Positives = 100/192 (52%), Gaps = 16/192 (8%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVP-GLPS----DVTSVSAGHYHSLAVTNNG 83
           V ++G  S G LGL      +G +  E  RVP  + S     +  V+ G+YHSLA++   
Sbjct: 105 VYAWGLDSDGQLGL------LGSE--ECIRVPRNIKSLSDIQIVQVACGYYHSLALSKAS 156

Query: 84  AVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVW 143
            V+ WG+N   QLG G    + T   P+ ++ L  +      A G  S  +   G+++ W
Sbjct: 157 EVFCWGQNKYGQLGLGTDCKKQT--SPQLIKSLLGIPFMQVAAGGAHSFVLTLSGAIFGW 214

Query: 144 GKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGR 203
           G++K GQLGL  D  +  VP+ +++L  +KIV +  G  H  A T++G +F +G    G+
Sbjct: 215 GRNKFGQLGLN-DENDRYVPNLLKSLRSQKIVYICCGEDHTAALTKEGGVFTFGAGGYGQ 273

Query: 204 IGNLGKALESSP 215
           +G+   + E +P
Sbjct: 274 LGHNSTSHEINP 285



 Score = 71.6 bits (174), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 68/273 (24%), Positives = 111/273 (40%), Gaps = 57/273 (20%)

Query: 87  AWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKS 146
            WG  +  QLG G ++      +P++ +      V         +  + DDG+++  G +
Sbjct: 3   CWGNASFGQLGLGGIDEEIVL-EPRKSDFFINKKVRDVGCGLRHTVFVLDDGTVYTCGCN 61

Query: 147 KRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGN 206
             GQLG  K   +   P +V AL  + IV VS G  H LA  + G+++ WG  +DG++G 
Sbjct: 62  DLGQLGHEKSRKK---PEQVVALDAQNIVAVSCGEAHTLALNDKGQVYAWGLDSDGQLGL 118

Query: 207 LGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEV 266
           LG   E   +  NI   S+                                      +++
Sbjct: 119 LGSE-ECIRVPRNIKSLSD--------------------------------------IQI 139

Query: 267 VDIACGFDHSLVLGRNGVLLSCGSNVYGQLG-----REKQDMGMFPVDINFHPVSISSGL 321
           V +ACG+ HSL L +   +   G N YGQLG     +++    +    +    + +++G 
Sbjct: 140 VQVACGYYHSLALSKASEVFCWGQNKYGQLGLGTDCKKQTSPQLIKSLLGIPFMQVAAGG 199

Query: 322 GHSLAICEVRSSNVTGGARGIVSWGWNRSSQLG 354
            HS  +          GA  I  WG N+  QLG
Sbjct: 200 AHSFVL-------TLSGA--IFGWGRNKFGQLG 223


>gi|344283459|ref|XP_003413489.1| PREDICTED: LOW QUALITY PROTEIN: protein RCC2-like [Loxodonta
           africana]
          Length = 523

 Score = 94.7 bits (234), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 82/293 (27%), Positives = 130/293 (44%), Gaps = 35/293 (11%)

Query: 75  HSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAI 134
           HSL +T  G +W+WGRN + QLG G  +       PK +EGL    + +A      + A+
Sbjct: 162 HSLLITTEGKLWSWGRNEKGQLGHGDTKRVEA---PKLIEGLSHEVIVSAACGRNHTLAL 218

Query: 135 GDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLF 194
            + GS++ +G++K GQLGLG        P+++    G+ I K++ G   ++     G L+
Sbjct: 219 TETGSVFAFGENKMGQLGLGNQTDAVPSPAQI-MYNGQPITKMACGAEFSMIMDCKGNLY 277

Query: 195 GWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPI 254
            +G    G++G+            N D    +  +      E   + V+  +EK K   I
Sbjct: 278 SFGCPEYGQLGH------------NSDGKFIARAQRIEYDCELVPRRVAIFIEKTKDGQI 325

Query: 255 IWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFHP 314
           +  P +V    V D+ACG +H+LVL     + S G   YG+LG  +Q   M P  +    
Sbjct: 326 LPVPNVV----VRDVACGANHTLVLDSQKRVFSWGFGGYGRLGHAEQKDEMVPRLVKLFD 381

Query: 315 V------SISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPDNV 361
                   I +G   S A+ EV          G+  WG   +S+   M P  V
Sbjct: 382 FPGRGASQIYAGYTCSFAVSEV---------GGLFFWGATNTSRESTMYPKAV 425



 Score = 52.8 bits (125), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 56/186 (30%), Positives = 80/186 (43%), Gaps = 31/186 (16%)

Query: 56  PTRVPGLPSDV-TSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVE 114
           P  + GL  +V  S + G  H+LA+T  G+V+A+G N   QLG G      T   P   +
Sbjct: 194 PKLIEGLSHEVIVSAACGRNHTLALTETGSVFAFGENKMGQLGLG----NQTDAVPSPAQ 249

Query: 115 GLDQVNVCAAFASGVVSSAIGD-DGSLWVWGKSKRGQLGL---GKDITEA--------IV 162
            +         A G   S I D  G+L+ +G  + GQLG    GK I  A        +V
Sbjct: 250 IMYNGQPITKMACGAEFSMIMDCKGNLYSFGCPEYGQLGHNSDGKFIARAQRIEYDCELV 309

Query: 163 PSRVEALAGEK-------------IVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGK 209
           P RV A+  EK             +  V+ G  H L      ++F WG+   GR+G+  +
Sbjct: 310 PRRV-AIFIEKTKDGQILPVPNVVVRDVACGANHTLVLDSQKRVFSWGFGGYGRLGHAEQ 368

Query: 210 ALESSP 215
             E  P
Sbjct: 369 KDEMVP 374


>gi|159038147|ref|YP_001537400.1| regulator of chromosome condensation, RCC1 [Salinispora arenicola
           CNS-205]
 gi|157916982|gb|ABV98409.1| regulator of chromosome condensation, RCC1 [Salinispora arenicola
           CNS-205]
          Length = 555

 Score = 94.7 bits (234), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 101/343 (29%), Positives = 145/343 (42%), Gaps = 35/343 (10%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLP-SDVTSVSAGHYHSLAVTNNGAVWA 87
           V+++GD   G LG      G G D+  P  V   P + VT+++AG  HSLA+T+ G V A
Sbjct: 58  VLAWGDNLFGQLG-----DGTGADSDTPIPVSLPPGTTVTAIAAGDEHSLALTSTGTVLA 112

Query: 88  WGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSK 147
           WGRN   QLG     SR+T   P  V       V A  A    S AI   GS   WG++ 
Sbjct: 113 WGRNRFGQLGDETNTSRST---PVTVSLPPGTTVTAIAAGRSHSLAITSTGSALAWGRNF 169

Query: 148 RGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNL 207
            GQLG G    ++  P  V    G  +  ++ G GH+LA T  G    WG +  G++G+ 
Sbjct: 170 SGQLGDGT-TNDSNKPVAVNLPPGTTVTAIAAGDGHSLAVTSAGTALAWGRNFAGQLGDG 228

Query: 208 GKALESSPLDSNIDRSSESDQ----EISSSTIEKAQKLVSEGMEKEKYM--------PII 255
                ++P+  ++   +         + S  I  A   +  G      +           
Sbjct: 229 TTNDSTTPVTVSVAPGTTVTDIAAGRVHSLAITSAGTALGWGRNGSGQLGDGTTNDSTTP 288

Query: 256 WEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFHP- 314
                  G     +A G DHSL +   G  L+ G N+YGQLG          V ++  P 
Sbjct: 289 TTVSPPTGTVFTTVAAGEDHSLAVTSAGTALAAGDNLYGQLGDGTNTSSNTFVTVSLPPS 348

Query: 315 ---VSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLG 354
               +I+ G  H+L +        TG A   ++WG N   QLG
Sbjct: 349 TTITAIAVGRFHNLGVT------ATGAA---LAWGINIDGQLG 382



 Score = 85.5 bits (210), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 80/291 (27%), Positives = 124/291 (42%), Gaps = 27/291 (9%)

Query: 64  SDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCA 123
           + VT+++AG  HSLA+T+ G+  AWGRN   QLG G        N P  V       V A
Sbjct: 141 TTVTAIAAGRSHSLAITSTGSALAWGRNFSGQLGDGTTNDS---NKPVAVNLPPGTTVTA 197

Query: 124 AFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGH 183
             A    S A+   G+   WG++  GQLG G    ++  P  V    G  +  ++ G  H
Sbjct: 198 IAAGDGHSLAVTSAGTALAWGRNFAGQLGDGT-TNDSTTPVTVSVAPGTTVTDIAAGRVH 256

Query: 184 ALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDR----SSESDQEISSSTIEKAQ 239
           +LA T  G   GWG +  G++G+      ++P   +       ++ +  E  S  +  A 
Sbjct: 257 SLAITSAGTALGWGRNGSGQLGDGTTNDSTTPTTVSPPTGTVFTTVAAGEDHSLAVTSAG 316

Query: 240 KLVSEG------------MEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLS 287
             ++ G                 ++ +   P       +  IA G  H+L +   G  L+
Sbjct: 317 TALAAGDNLYGQLGDGTNTSSNTFVTVSLPP----STTITAIAVGRFHNLGVTATGAALA 372

Query: 288 CGSNVYGQLGREKQDMGMFPVDINFHPVS--ISSGLGHSLAICEVRSSNVT 336
            G N+ GQLG         P  ++  PVS  ++ G GHSLA+    +S  T
Sbjct: 373 WGINIDGQLGDGTTTNRNTPQAVDL-PVSTTVAGGFGHSLALAAPPTSTTT 422



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 50/167 (29%), Positives = 70/167 (41%), Gaps = 19/167 (11%)

Query: 48  GVGGDAYEPTRVPGLP-SDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRAT 106
           G   D+  P  V   P + VT ++AG  HSLA+T+ G    WGRN   QLG G      T
Sbjct: 228 GTTNDSTTPVTVSVAPGTTVTDIAAGRVHSLAITSAGTALGWGRNGSGQLGDGTTNDSTT 287

Query: 107 WNDPKRVEGLDQVNVCAAFASGVVSS-AIGDDGSLWVWGKSKRGQLGLGKD------ITE 159
                         V    A+G   S A+   G+    G +  GQLG G +      +T 
Sbjct: 288 ----PTTVSPPTGTVFTTVAAGEDHSLAVTSAGTALAAGDNLYGQLGDGTNTSSNTFVTV 343

Query: 160 AIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGN 206
           ++ PS         I  ++ G  H L  T  G    WG + DG++G+
Sbjct: 344 SLPPS-------TTITAIAVGRFHNLGVTATGAALAWGINIDGQLGD 383


>gi|403273885|ref|XP_003928728.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC4 isoform 2
           [Saimiri boliviensis boliviensis]
          Length = 1057

 Score = 94.7 bits (234), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 65/245 (26%), Positives = 114/245 (46%), Gaps = 43/245 (17%)

Query: 55  EPTRVPGLPS-DVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRV 113
           +P +V  L + ++ +VS G  H+LA+ + G V+AWG +++ QLG   L S      P+ +
Sbjct: 74  KPEQVVALDAQNIVAVSCGEAHTLALNDKGQVYAWGLDSDGQLG--LLGSEECIRVPRNI 131

Query: 114 EGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEK 173
           + L  + +         S A+     ++ WG++K GQLGLG D  +   P  +++L G  
Sbjct: 132 KSLSDIQIVQVACGYYHSLALSKASEVFCWGQNKYGQLGLGTDCKKQTSPQLIKSLLGIP 191

Query: 174 IVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSS 233
            ++V+ G  H+   T  G +FGWG +  G++G          L+                
Sbjct: 192 FMQVAAGGAHSFVLTLSGAIFGWGRNKFGQLG----------LND--------------- 226

Query: 234 TIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVY 293
                        E ++Y+P + +   +   ++V I CG DH+  L + G + + G+  Y
Sbjct: 227 -------------ENDRYVPNLLKS--LRSQKIVYICCGEDHTAALTKEGGVFTFGAGGY 271

Query: 294 GQLGR 298
           GQLG 
Sbjct: 272 GQLGH 276



 Score = 81.3 bits (199), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 61/192 (31%), Positives = 100/192 (52%), Gaps = 16/192 (8%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVP-GLPS----DVTSVSAGHYHSLAVTNNG 83
           V ++G  S G LGL      +G +  E  RVP  + S     +  V+ G+YHSLA++   
Sbjct: 105 VYAWGLDSDGQLGL------LGSE--ECIRVPRNIKSLSDIQIVQVACGYYHSLALSKAS 156

Query: 84  AVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVW 143
            V+ WG+N   QLG G    + T   P+ ++ L  +      A G  S  +   G+++ W
Sbjct: 157 EVFCWGQNKYGQLGLGTDCKKQT--SPQLIKSLLGIPFMQVAAGGAHSFVLTLSGAIFGW 214

Query: 144 GKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGR 203
           G++K GQLGL  D  +  VP+ +++L  +KIV +  G  H  A T++G +F +G    G+
Sbjct: 215 GRNKFGQLGLN-DENDRYVPNLLKSLRSQKIVYICCGEDHTAALTKEGGVFTFGAGGYGQ 273

Query: 204 IGNLGKALESSP 215
           +G+   + E +P
Sbjct: 274 LGHNSTSHEINP 285



 Score = 71.6 bits (174), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 68/275 (24%), Positives = 112/275 (40%), Gaps = 57/275 (20%)

Query: 85  VWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWG 144
           +  WG  +  QLG G ++      +P++ +      V         +  + DDG+++  G
Sbjct: 1   MLCWGNASFGQLGLGGIDEEIVL-EPRKSDFFINKKVRDVGCGLRHTVFVLDDGTVYTCG 59

Query: 145 KSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRI 204
            +  GQLG  K   +   P +V AL  + IV VS G  H LA  + G+++ WG  +DG++
Sbjct: 60  CNDLGQLGHEKSRKK---PEQVVALDAQNIVAVSCGEAHTLALNDKGQVYAWGLDSDGQL 116

Query: 205 GNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGV 264
           G LG   E   +  NI   S+                                      +
Sbjct: 117 GLLGSE-ECIRVPRNIKSLSD--------------------------------------I 137

Query: 265 EVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLG-----REKQDMGMFPVDINFHPVSISS 319
           ++V +ACG+ HSL L +   +   G N YGQLG     +++    +    +    + +++
Sbjct: 138 QIVQVACGYYHSLALSKASEVFCWGQNKYGQLGLGTDCKKQTSPQLIKSLLGIPFMQVAA 197

Query: 320 GLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLG 354
           G  HS  +          GA  I  WG N+  QLG
Sbjct: 198 GGAHSFVL-------TLSGA--IFGWGRNKFGQLG 223


>gi|402880677|ref|XP_003903924.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC4 isoform 2
           [Papio anubis]
          Length = 1057

 Score = 94.7 bits (234), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 65/245 (26%), Positives = 114/245 (46%), Gaps = 43/245 (17%)

Query: 55  EPTRVPGLPS-DVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRV 113
           +P +V  L + ++ +VS G  H+LA+ + G V+AWG +++ QLG   L S      P+ +
Sbjct: 74  KPEQVVALDAQNIVAVSCGEAHTLALNDKGQVYAWGLDSDGQLG--LLGSEECIRVPRNI 131

Query: 114 EGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEK 173
           + L  + +         S A+     ++ WG++K GQLGLG D  +   P  +++L G  
Sbjct: 132 KSLSDIQIIQVACGYYHSLALSKASEVFCWGQNKYGQLGLGTDCKKQTSPQLIKSLLGIP 191

Query: 174 IVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSS 233
            ++V+ G  H+   T  G +FGWG +  G++G          L+                
Sbjct: 192 FMQVAAGGAHSFVLTLSGAIFGWGRNKFGQLG----------LND--------------- 226

Query: 234 TIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVY 293
                        E ++Y+P + +   +   ++V I CG DH+  L + G + + G+  Y
Sbjct: 227 -------------ENDRYVPNLLKS--LRSQKIVYICCGEDHTAALTKEGGVFTFGAGGY 271

Query: 294 GQLGR 298
           GQLG 
Sbjct: 272 GQLGH 276



 Score = 80.9 bits (198), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 61/192 (31%), Positives = 100/192 (52%), Gaps = 16/192 (8%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVP-GLPS----DVTSVSAGHYHSLAVTNNG 83
           V ++G  S G LGL      +G +  E  RVP  + S     +  V+ G+YHSLA++   
Sbjct: 105 VYAWGLDSDGQLGL------LGSE--ECIRVPRNIKSLSDIQIIQVACGYYHSLALSKAS 156

Query: 84  AVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVW 143
            V+ WG+N   QLG G    + T   P+ ++ L  +      A G  S  +   G+++ W
Sbjct: 157 EVFCWGQNKYGQLGLGTDCKKQT--SPQLIKSLLGIPFMQVAAGGAHSFVLTLSGAIFGW 214

Query: 144 GKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGR 203
           G++K GQLGL  D  +  VP+ +++L  +KIV +  G  H  A T++G +F +G    G+
Sbjct: 215 GRNKFGQLGLN-DENDRYVPNLLKSLRSQKIVYICCGEDHTAALTKEGGVFTFGAGGYGQ 273

Query: 204 IGNLGKALESSP 215
           +G+   + E +P
Sbjct: 274 LGHNSTSHEINP 285



 Score = 71.2 bits (173), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 67/275 (24%), Positives = 112/275 (40%), Gaps = 57/275 (20%)

Query: 85  VWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWG 144
           +  WG  +  QLG G ++      +P++ +      V         +  + DDG+++  G
Sbjct: 1   MLCWGNASFGQLGLGGIDEEIVL-EPRKSDFFINKKVRDVGCGLRHTVFVLDDGTVYTCG 59

Query: 145 KSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRI 204
            +  GQLG  K   +   P +V AL  + IV VS G  H LA  + G+++ WG  +DG++
Sbjct: 60  CNDLGQLGHEKSRKK---PEQVVALDAQNIVAVSCGEAHTLALNDKGQVYAWGLDSDGQL 116

Query: 205 GNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGV 264
           G LG   E   +  NI   S+                                      +
Sbjct: 117 GLLGSE-ECIRVPRNIKSLSD--------------------------------------I 137

Query: 265 EVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLG-----REKQDMGMFPVDINFHPVSISS 319
           +++ +ACG+ HSL L +   +   G N YGQLG     +++    +    +    + +++
Sbjct: 138 QIIQVACGYYHSLALSKASEVFCWGQNKYGQLGLGTDCKKQTSPQLIKSLLGIPFMQVAA 197

Query: 320 GLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLG 354
           G  HS  +          GA  I  WG N+  QLG
Sbjct: 198 GGAHSFVL-------TLSGA--IFGWGRNKFGQLG 223


>gi|383872260|ref|NP_001244507.1| probable E3 ubiquitin-protein ligase HERC4 [Macaca mulatta]
 gi|355782894|gb|EHH64815.1| hypothetical protein EGM_18130 [Macaca fascicularis]
 gi|380786489|gb|AFE65120.1| putative E3 ubiquitin-protein ligase HERC4 isoform a [Macaca
           mulatta]
 gi|383411599|gb|AFH29013.1| putative E3 ubiquitin-protein ligase HERC4 isoform a [Macaca
           mulatta]
          Length = 1057

 Score = 94.7 bits (234), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 65/245 (26%), Positives = 114/245 (46%), Gaps = 43/245 (17%)

Query: 55  EPTRVPGLPS-DVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRV 113
           +P +V  L + ++ +VS G  H+LA+ + G V+AWG +++ QLG   L S      P+ +
Sbjct: 74  KPEQVVALDAQNIVAVSCGEAHTLALNDKGQVYAWGLDSDGQLG--LLGSEECIRVPRNI 131

Query: 114 EGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEK 173
           + L  + +         S A+     ++ WG++K GQLGLG D  +   P  +++L G  
Sbjct: 132 KSLSDIQIIQVACGYYHSLALSKASEVFCWGQNKYGQLGLGTDCKKQTSPQLIKSLLGIP 191

Query: 174 IVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSS 233
            ++V+ G  H+   T  G +FGWG +  G++G          L+                
Sbjct: 192 FMQVAAGGAHSFVLTLSGAIFGWGRNKFGQLG----------LND--------------- 226

Query: 234 TIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVY 293
                        E ++Y+P + +   +   ++V I CG DH+  L + G + + G+  Y
Sbjct: 227 -------------ENDRYVPNLLKS--LRSQKIVYICCGEDHTAALTKEGGVFTFGAGGY 271

Query: 294 GQLGR 298
           GQLG 
Sbjct: 272 GQLGH 276



 Score = 80.9 bits (198), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 61/192 (31%), Positives = 100/192 (52%), Gaps = 16/192 (8%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVP-GLPS----DVTSVSAGHYHSLAVTNNG 83
           V ++G  S G LGL      +G +  E  RVP  + S     +  V+ G+YHSLA++   
Sbjct: 105 VYAWGLDSDGQLGL------LGSE--ECIRVPRNIKSLSDIQIIQVACGYYHSLALSKAS 156

Query: 84  AVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVW 143
            V+ WG+N   QLG G    + T   P+ ++ L  +      A G  S  +   G+++ W
Sbjct: 157 EVFCWGQNKYGQLGLGTDCKKQT--SPQLIKSLLGIPFMQVAAGGAHSFVLTLSGAIFGW 214

Query: 144 GKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGR 203
           G++K GQLGL  D  +  VP+ +++L  +KIV +  G  H  A T++G +F +G    G+
Sbjct: 215 GRNKFGQLGLN-DENDRYVPNLLKSLRSQKIVYICCGEDHTAALTKEGGVFTFGAGGYGQ 273

Query: 204 IGNLGKALESSP 215
           +G+   + E +P
Sbjct: 274 LGHNSTSHEINP 285



 Score = 71.2 bits (173), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 67/275 (24%), Positives = 112/275 (40%), Gaps = 57/275 (20%)

Query: 85  VWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWG 144
           +  WG  +  QLG G ++      +P++ +      V         +  + DDG+++  G
Sbjct: 1   MLCWGNASFGQLGLGGIDEEIVL-EPRKSDFFINKKVRDVGCGLRHTVFVLDDGTVYTCG 59

Query: 145 KSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRI 204
            +  GQLG  K   +   P +V AL  + IV VS G  H LA  + G+++ WG  +DG++
Sbjct: 60  CNDLGQLGHEKSRKK---PEQVVALDAQNIVAVSCGEAHTLALNDKGQVYAWGLDSDGQL 116

Query: 205 GNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGV 264
           G LG   E   +  NI   S+                                      +
Sbjct: 117 GLLGSE-ECIRVPRNIKSLSD--------------------------------------I 137

Query: 265 EVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLG-----REKQDMGMFPVDINFHPVSISS 319
           +++ +ACG+ HSL L +   +   G N YGQLG     +++    +    +    + +++
Sbjct: 138 QIIQVACGYYHSLALSKASEVFCWGQNKYGQLGLGTDCKKQTSPQLIKSLLGIPFMQVAA 197

Query: 320 GLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLG 354
           G  HS  +          GA  I  WG N+  QLG
Sbjct: 198 GGAHSFVL-------TLSGA--IFGWGRNKFGQLG 223


>gi|398332633|ref|ZP_10517338.1| RCC1 domain-containing protein [Leptospira alexanderi serovar
           Manhao 3 str. L 60]
          Length = 527

 Score = 94.7 bits (234), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 92/305 (30%), Positives = 152/305 (49%), Gaps = 32/305 (10%)

Query: 21  MRSASGTAVVSFGDGSQGALGLPTSLTG-----VGGDAYEPTRVPGLPSDVTSVSAGHYH 75
           M  A    V ++G+ ++G LG+  + T        G+   PT VPG+  D    + G  H
Sbjct: 212 MAIAKNGRVYTWGNNAKGQLGIGNNNTNPANPRAAGNRQPPTLVPGI-DDAVMGAYGFNH 270

Query: 76  SLAVTNNGAVWAWGRNNEVQLGRGA--LESRATWNDPKRVEGLDQVNVCAAFASGVVSSA 133
           +L + ++G V A+G+NN  QLG GA  L + +   DP  V GL   +V    A    S+A
Sbjct: 271 ALILKSDGTVVAFGQNNVGQLGNGANNLNADSFSMDPVAVVGLR--DVIQVIAGSEHSAA 328

Query: 134 IGDDGSLWVWGKSKRGQLGLGK----DITEAIVPSRVEALAGEKIVKVSFGWGHALAQTE 189
           + ++G ++VWG+++ G LG G+    +  ++I P +VE L G  I +++ G  H LA   
Sbjct: 329 LTENGEVYVWGRNQYGNLGNGRLSAANAAQSI-PVKVEGLPG--IKQIANGRDHILALAS 385

Query: 190 DGKLFGWGYSADGRIGNLGK-ALESSPLDSNI----DRSSESDQEISSSTIEKAQKLVSE 244
           DG+++ WG +A G++G  G  +   +P+ + +    + SS       S +I K+ ++   
Sbjct: 386 DGRIYSWGLNASGQLGIGGNGSPNPTPIPTQVLNILNASSVWAGGTQSFSILKSGEVKGW 445

Query: 245 GMEK--------EKYMPIIWEPF-LVEGVE-VVDIACGFDHSLVLGRNGVLLSCGSNVYG 294
           G           E     ++EP   V G++ V+   CG  H+ VL  NG +   G N  G
Sbjct: 446 GANGNTANLAIGETNTLKVYEPNKAVVGIDNVIHFGCGATHNFVLLGNGEIYGWGWNFKG 505

Query: 295 QLGRE 299
            LGR+
Sbjct: 506 SLGRQ 510



 Score = 70.5 bits (171), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 88/326 (26%), Positives = 128/326 (39%), Gaps = 79/326 (24%)

Query: 67  TSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFA 126
           T +SAG  HS     NG V+  GRNN  QLG G   S    N+   V+     N+ +   
Sbjct: 150 TKLSAGGAHS-GFLKNGEVYTAGRNNFGQLGTG--NSTGDENNDVIVKLNSISNIFSIHF 206

Query: 127 SGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITE-------------AIVPSRVEALAGEK 173
           +   S AI  +G ++ WG + +GQLG+G + T               +VP   +A+ G  
Sbjct: 207 NQNNSMAIAKNGRVYTWGNNAKGQLGIGNNNTNPANPRAAGNRQPPTLVPGIDDAVMG-- 264

Query: 174 IVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSS 233
               ++G+ HAL    DG +  +G +  G++GN    L       N D  S         
Sbjct: 265 ----AYGFNHALILKSDGTVVAFGQNNVGQLGNGANNL-------NADSFS--------- 304

Query: 234 TIEKAQKLVSEGMEKEKYMPIIWEPFLVEGV-EVVDIACGFDHSLVLGRNGVLLSCGSNV 292
                                  +P  V G+ +V+ +  G +HS  L  NG +   G N 
Sbjct: 305 ----------------------MDPVAVVGLRDVIQVIAGSEHSAALTENGEVYVWGRNQ 342

Query: 293 YGQLGREKQDMG----MFPVDINFHP--VSISSGLGHSLAICEVRSSNVTGGARGIVSWG 346
           YG LG  +          PV +   P    I++G  H LA+              I SWG
Sbjct: 343 YGNLGNGRLSAANAAQSIPVKVEGLPGIKQIANGRDHILALASDGR---------IYSWG 393

Query: 347 WNRSSQLGRMG---PDNVPLVVEGLE 369
            N S QLG  G   P+  P+  + L 
Sbjct: 394 LNASGQLGIGGNGSPNPTPIPTQVLN 419



 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 61/264 (23%), Positives = 108/264 (40%), Gaps = 64/264 (24%)

Query: 125 FASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHA 184
            ++G   S    +G ++  G++  GQLG G    +      V+  +   I  + F   ++
Sbjct: 152 LSAGGAHSGFLKNGEVYTAGRNNFGQLGTGNSTGDENNDVIVKLNSISNIFSIHFNQNNS 211

Query: 185 LAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSE 244
           +A  ++G+++ WG +A G++G                        I ++    A    + 
Sbjct: 212 MAIAKNGRVYTWGNNAKGQLG------------------------IGNNNTNPANPRAAG 247

Query: 245 GMEKEKYMPIIWEPFLVEGVE-VVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDM 303
             +          P LV G++  V  A GF+H+L+L  +G +++ G N  GQLG    ++
Sbjct: 248 NRQ---------PPTLVPGIDDAVMGAYGFNHALILKSDGTVVAFGQNNVGQLGNGANNL 298

Query: 304 G-----MFPV------DINFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQ 352
                 M PV      D+    + + +G  HS A+ E            +  WG N+   
Sbjct: 299 NADSFSMDPVAVVGLRDV----IQVIAGSEHSAALTENGE---------VYVWGRNQYGN 345

Query: 353 L--GRMGPDN----VPLVVEGLEG 370
           L  GR+   N    +P+ VEGL G
Sbjct: 346 LGNGRLSAANAAQSIPVKVEGLPG 369


>gi|428176834|gb|EKX45717.1| hypothetical protein GUITHDRAFT_71196, partial [Guillardia theta
           CCMP2712]
          Length = 325

 Score = 94.4 bits (233), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 86/285 (30%), Positives = 133/285 (46%), Gaps = 35/285 (12%)

Query: 24  ASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPS-DVTSVSAGHYHSLAVTNN 82
           +S   V S+G+   G LGL    T     + +PT +  L S  V  V+AG   SLA++  
Sbjct: 63  SSHFKVFSWGESMHGQLGLGA--TSARQASVQPTHIDKLDSLYVVQVAAGGNCSLAISKK 120

Query: 83  GAVWAWGRNNEVQLGRGA-LESRATWNDPKRVEGL--------DQVNVCAAFASGVVSSA 133
           G + AWG N+  QLG GA    +A   +P  + G          Q  +  A   G   + 
Sbjct: 121 GTMLAWGDNSMEQLGLGASFSGKAKVLEPSSILGFSVEAEIQWQQPVIVRARIGGSHGAC 180

Query: 134 IGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKL 193
           +   G+L+ WG++  GQLGLG D  +   PS V+     + V+VS G  H  A     +L
Sbjct: 181 LDTSGNLFTWGRNDCGQLGLG-DQVDRNTPSMVKT---HQFVRVSVGTSHTAAVDHRYQL 236

Query: 194 FGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMP 253
           + WG   +GR+G+ G   E               +EI  + + K ++ ++  +E +K   
Sbjct: 237 WTWGSVGEGRLGH-GVLFEE-------------KKEIRGNVVNKIRRQLNFVLEPKKV-- 280

Query: 254 IIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGR 298
              E F  + + + D+AC    ++ L R G L S G+ +YGQLGR
Sbjct: 281 ---EFFKQKRIGLADVACSNSFTIALDRKGRLWSWGAGMYGQLGR 322



 Score = 45.1 bits (105), Expect = 0.057,   Method: Compositional matrix adjust.
 Identities = 42/146 (28%), Positives = 58/146 (39%), Gaps = 25/146 (17%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAW 88
           + ++G    G LGL   +     D   P+ V         VS G  H+ AV +   +W W
Sbjct: 187 LFTWGRNDCGQLGLGDQV-----DRNTPSMVK--THQFVRVSVGTSHTAAVDHRYQLWTW 239

Query: 89  GRNNEVQLGRGAL-------------ESRATWN---DPKRVEGLDQ--VNVCAAFASGVV 130
           G   E +LG G L             + R   N   +PK+VE   Q  + +     S   
Sbjct: 240 GSVGEGRLGHGVLFEEKKEIRGNVVNKIRRQLNFVLEPKKVEFFKQKRIGLADVACSNSF 299

Query: 131 SSAIGDDGSLWVWGKSKRGQLGLGKD 156
           + A+   G LW WG    GQLG G D
Sbjct: 300 TIALDRKGRLWSWGAGMYGQLGRGSD 325


>gi|156372872|ref|XP_001629259.1| predicted protein [Nematostella vectensis]
 gi|156216255|gb|EDO37196.1| predicted protein [Nematostella vectensis]
          Length = 4220

 Score = 94.4 bits (233), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 67/193 (34%), Positives = 100/193 (51%), Gaps = 18/193 (9%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPS----DVTSVSAGHYHSLAVTNNGA 84
           + ++G G+ G LG      G   D   P  V GL      DV +  +G  H+LA  ++G 
Sbjct: 90  LYTWGRGNYGRLG-----HGSSEDQLVPVLVSGLRGHHIIDV-ACGSGDAHTLAAADDGT 143

Query: 85  VWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWG 144
           VW+WG  +  +LGRG  +      +PK +E L  + VC  +     S A+  DGS+W WG
Sbjct: 144 VWSWGDGDYGKLGRGGSDG---CKNPKSIERLQGLGVCKVYCGAQFSLALTRDGSVWTWG 200

Query: 145 KSKRGQLGLGKDITEAIV--PSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADG 202
           K +  +LG G   TE  V  P  VEAL G+ +V VS G  H LA T+ G+++ WG +  G
Sbjct: 201 KGEGFRLGHG---TEDHVRHPKLVEALDGKHVVDVSVGSIHCLALTDAGEVYCWGRNDQG 257

Query: 203 RIGNLGKALESSP 215
           ++G++   +   P
Sbjct: 258 QLGDIDCQIRPEP 270



 Score = 85.1 bits (209), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 65/193 (33%), Positives = 92/193 (47%), Gaps = 18/193 (9%)

Query: 29   VVSFGDGSQGALGLPTSLTGVGGDAY---EPTRVPGLPSD-VTSVSAGHY--HSLAVTNN 82
            + ++G G  G LG         GD Y   +P +V    S  V  ++ G     +LA+T++
Sbjct: 2582 LYTWGLGEYGRLG--------HGDNYTHLKPKKVQSFTSHRVIDIACGSRDAQTLALTDD 2633

Query: 83   GAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWV 142
            G VW+WG  +  +LGRG  E  +    P  VE L    VC        S A+   G +W 
Sbjct: 2634 GTVWSWGDGDFGKLGRGGSEGCSV---PNPVEKLQGQGVCKVACGAQFSLALSTSGLVWT 2690

Query: 143  WGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADG 202
            WGK    +LG G D T    P  V+ L G+KIV V+ G  H LA T+ G++F WG +  G
Sbjct: 2691 WGKGDYYRLGHGND-THVRKPQIVDGLRGKKIVDVAVGALHCLAVTDSGQVFAWGDNDHG 2749

Query: 203  RIGNLGKALESSP 215
            + GN    +   P
Sbjct: 2750 QQGNNTTTVNRRP 2762



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 86/304 (28%), Positives = 125/304 (41%), Gaps = 65/304 (21%)

Query: 75  HSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAI 134
           H LA+T  G V++WG  +  +LG G    R    +P  V GL    V         S+A+
Sbjct: 28  HFLALTREGEVYSWGSGDGGKLGHGDTSPR---EEPTLVTGLAGKQVIRISCGSTHSAAV 84

Query: 135 GDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWG--HALAQTEDGK 192
             +G L+ WG+   G+LG G    + +VP  V  L G  I+ V+ G G  H LA  +DG 
Sbjct: 85  TSEGELYTWGRGNYGRLGHGSS-EDQLVPVLVSGLRGHHIIDVACGSGDAHTLAAADDGT 143

Query: 193 LFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYM 252
           ++ WG   DG  G LG+                SD   +  +IE+ Q             
Sbjct: 144 VWSWG---DGDYGKLGRG--------------GSDGCKNPKSIERLQ------------- 173

Query: 253 PIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINF 312
                     G+ V  + CG   SL L R+G + + G     +LG   +D    P  +  
Sbjct: 174 ----------GLGVCKVYCGAQFSLALTRDGSVWTWGKGEGFRLGHGTEDHVRHPKLVEA 223

Query: 313 ----HPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLG----RMGPDNVPLV 364
               H V +S G  H LA+ +         A  +  WG N   QLG    ++ P+  P +
Sbjct: 224 LDGKHVVDVSVGSIHCLALTD---------AGEVYCWGRNDQGQLGDIDCQIRPE--PTL 272

Query: 365 VEGL 368
           V GL
Sbjct: 273 VSGL 276



 Score = 75.9 bits (185), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 84/336 (25%), Positives = 152/336 (45%), Gaps = 38/336 (11%)

Query: 19   IFMRSASGTAVVSFGDGSQGALGL-PTSLTGVGGDAYEPTRVPGLPSDVT---SVSAGHY 74
            +F  S  G  V + G+ + G LGL P S      +   P ++  L S +    SV +G  
Sbjct: 2466 LFAVSHDG-KVFACGESTNGRLGLGPLS-----ANVTVPRQIENLSSFMVRKVSVHSGGR 2519

Query: 75   HSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAI 134
            H++A+T  G +++WG   + +LG G   +R   + PK ++      V         S+AI
Sbjct: 2520 HAMALTIEGKLFSWGEGEDGKLGHG---NRMNCDHPKLIDTFKSSCVRDMSCGSSHSAAI 2576

Query: 135  GDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGW--GHALAQTEDGK 192
               G L+ WG  + G+LG G + T  + P +V++    +++ ++ G      LA T+DG 
Sbjct: 2577 LSSGELYTWGLGEYGRLGHGDNYTH-LKPKKVQSFTSHRVIDIACGSRDAQTLALTDDGT 2635

Query: 193  LFGWGYSADGRIGNLGK-ALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGME---- 247
            ++ WG   DG  G LG+   E   + + +++         +   + +  L + G+     
Sbjct: 2636 VWSWG---DGDFGKLGRGGSEGCSVPNPVEKLQGQGVCKVACGAQFSLALSTSGLVWTWG 2692

Query: 248  KEKYMPI-------IWEPFLVEGV---EVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLG 297
            K  Y  +       + +P +V+G+   ++VD+A G  H L +  +G + + G N +GQ G
Sbjct: 2693 KGDYYRLGHGNDTHVRKPQIVDGLRGKKIVDVAVGALHCLAVTDSGQVFAWGDNDHGQQG 2752

Query: 298  REKQDMGMFPVDIN----FHPVSISSGLGHSLAICE 329
                 +   P  +N         ++ G  HS+A  E
Sbjct: 2753 NNTTTVNRRPQLVNGLEGQKITRVACGSSHSIAWAE 2788



 Score = 72.4 bits (176), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 42/136 (30%), Positives = 73/136 (53%), Gaps = 4/136 (2%)

Query: 71   AGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVV 130
            +G   +L +T++  VW+WG  +  +LGRG  +       P +VE L  + V         
Sbjct: 3554 SGDAQTLCLTDDDCVWSWGDGDYGKLGRGGSDG---CKIPMKVESLIGLGVSKVECGSQF 3610

Query: 131  SSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTED 190
            S A+   G+++ WGK    +LG G D      P RV AL G+K++ ++ G  H +A T+ 
Sbjct: 3611 SVALTRSGAVYTWGKGDYYRLGHGVD-DHVRRPKRVAALQGKKVITIATGSLHCVASTDT 3669

Query: 191  GKLFGWGYSADGRIGN 206
            G+++ WG + +G++G+
Sbjct: 3670 GEVYTWGDNDEGQLGD 3685



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 87/307 (28%), Positives = 133/307 (43%), Gaps = 30/307 (9%)

Query: 85   VWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWG 144
            V+ WG N++ QLG G   S+     P   E +  + V           A+  DG ++  G
Sbjct: 2423 VFVWGLNDKDQLG-GLKGSKI--KVPVLSEFIGALKVQQIAGGSKTLFAVSHDGKVFACG 2479

Query: 145  KSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWG--HALAQTEDGKLFGWGYSADG 202
            +S  G+LGLG       VP ++E L+   + KVS   G  HA+A T +GKLF WG   DG
Sbjct: 2480 ESTNGRLGLGPLSANVTVPRQIENLSSFMVRKVSVHSGGRHAMALTIEGKLFSWGEGEDG 2539

Query: 203  RIGNLGKALESSP-LDSNIDRSSESDQEISSS---TIEKAQKLVSEGM-------EKEKY 251
            ++G+  +     P L      S   D    SS    I  + +L + G+         + Y
Sbjct: 2540 KLGHGNRMNCDHPKLIDTFKSSCVRDMSCGSSHSAAILSSGELYTWGLGEYGRLGHGDNY 2599

Query: 252  MPIIWEPFLVEGV---EVVDIACGFD--HSLVLGRNGVLLSCGSNVYGQLGREKQDMGMF 306
              +  +P  V+      V+DIACG     +L L  +G + S G   +G+LGR   +    
Sbjct: 2600 THL--KPKKVQSFTSHRVIDIACGSRDAQTLALTDDGTVWSWGDGDFGKLGRGGSEGCSV 2657

Query: 307  PVDINFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPDNV--PLV 364
            P     +PV    G G     C  + S     +  + +WG     +LG     +V  P +
Sbjct: 2658 P-----NPVEKLQGQGVCKVACGAQFSLALSTSGLVWTWGKGDYYRLGHGNDTHVRKPQI 2712

Query: 365  VEGLEGE 371
            V+GL G+
Sbjct: 2713 VDGLRGK 2719



 Score = 64.3 bits (155), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 66/246 (26%), Positives = 102/246 (41%), Gaps = 56/246 (22%)

Query: 133 AIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGK 192
           A+  +G ++ WG    G+LG G D +    P+ V  LAG++++++S G  H+ A T +G+
Sbjct: 31  ALTREGEVYSWGSGDGGKLGHG-DTSPREEPTLVTGLAGKQVIRISCGSTHSAAVTSEGE 89

Query: 193 LFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYM 252
           L+ WG    GR+G+                 S  DQ +                      
Sbjct: 90  LYTWGRGNYGRLGH----------------GSSEDQLV---------------------- 111

Query: 253 PIIWEPFLVEGV---EVVDIACGF--DHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFP 307
                P LV G+    ++D+ACG    H+L    +G + S G   YG+LGR   D    P
Sbjct: 112 -----PVLVSGLRGHHIIDVACGSGDAHTLAAADDGTVWSWGDGDYGKLGRGGSDGCKNP 166

Query: 308 VDINFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPDNV--PLVV 365
             I         GLG     C  + S        + +WG     +LG    D+V  P +V
Sbjct: 167 KSIER-----LQGLGVCKVYCGAQFSLALTRDGSVWTWGKGEGFRLGHGTEDHVRHPKLV 221

Query: 366 EGLEGE 371
           E L+G+
Sbjct: 222 EALDGK 227



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 68/267 (25%), Positives = 110/267 (41%), Gaps = 52/267 (19%)

Query: 111  KRVEGLDQVNV--CAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEA 168
            K +E L  V V   A  + G  + A+  DG ++ WG+   G+LG G +      P  +EA
Sbjct: 3431 KMLESLQHVVVRKVAVHSGGKHAMALSADGDVYSWGEGDDGKLGHG-NRNSCDRPRVIEA 3489

Query: 169  LAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQ 228
            L G+ ++ +S G  H+   T++ +L+ WG    GR+G+                      
Sbjct: 3490 LRGKGVIDISCGGSHSACITQNHELYTWGKGRYGRLGH---------------------- 3527

Query: 229  EISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGF--DHSLVLGRNGVLL 286
                            G  +++ +P + E   + G  V+D+ACG     +L L  +  + 
Sbjct: 3528 ----------------GDSEDQLLPKVVEA--LRGNRVIDVACGSGDAQTLCLTDDDCVW 3569

Query: 287  SCGSNVYGQLGREKQDMGMFPVDINFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWG 346
            S G   YG+LGR   D    P+      V    GLG S   C  + S     +  + +WG
Sbjct: 3570 SWGDGDYGKLGRGGSDGCKIPMK-----VESLIGLGVSKVECGSQFSVALTRSGAVYTWG 3624

Query: 347  WNRSSQLGRMGPDNV--PLVVEGLEGE 371
                 +LG    D+V  P  V  L+G+
Sbjct: 3625 KGDYYRLGHGVDDHVRRPKRVAALQGK 3651


>gi|114554345|ref|XP_513117.2| PREDICTED: protein RCC2 [Pan troglodytes]
          Length = 488

 Score = 94.4 bits (233), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 81/293 (27%), Positives = 130/293 (44%), Gaps = 35/293 (11%)

Query: 75  HSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAI 134
           HSL +T  G +W+WGRN + QLG G  +       P+ +EGL    + +A      + A+
Sbjct: 127 HSLLITTEGKLWSWGRNEKGQLGHGDTKRVEA---PRLIEGLSHEVIVSAACGRNHTLAL 183

Query: 135 GDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLF 194
            + GS++ +G++K GQLGLG        P+++    G+ I K++ G   ++     G L+
Sbjct: 184 TETGSVFAFGENKMGQLGLGNQTDAVPSPAQI-MYNGQPITKMACGAEFSMIMDCKGNLY 242

Query: 195 GWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPI 254
            +G    G++G+            N D    +  +      E   + V+  +EK K   I
Sbjct: 243 SFGCPEYGQLGH------------NSDGKFIARAQRIEYDCELVPRRVAIFIEKTKDGQI 290

Query: 255 IWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFHP 314
           +  P +V    V D+ACG +H+LVL     + S G   YG+LG  +Q   M P  +    
Sbjct: 291 LPVPNVV----VRDVACGANHTLVLDSQKRVFSWGFGGYGRLGHAEQKDEMVPRLVKLFD 346

Query: 315 V------SISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPDNV 361
                   I +G   S A+ EV          G+  WG   +S+   M P  V
Sbjct: 347 FPGRGASQIYAGYTCSFAVSEV---------GGLFFWGATNTSRESTMYPKAV 390



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 56/186 (30%), Positives = 80/186 (43%), Gaps = 31/186 (16%)

Query: 56  PTRVPGLPSDV-TSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVE 114
           P  + GL  +V  S + G  H+LA+T  G+V+A+G N   QLG G      T   P   +
Sbjct: 159 PRLIEGLSHEVIVSAACGRNHTLALTETGSVFAFGENKMGQLGLG----NQTDAVPSPAQ 214

Query: 115 GLDQVNVCAAFASGVVSSAIGD-DGSLWVWGKSKRGQLGL---GKDITEA--------IV 162
            +         A G   S I D  G+L+ +G  + GQLG    GK I  A        +V
Sbjct: 215 IMYNGQPITKMACGAEFSMIMDCKGNLYSFGCPEYGQLGHNSDGKFIARAQRIEYDCELV 274

Query: 163 PSRVEALAGEK-------------IVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGK 209
           P RV A+  EK             +  V+ G  H L      ++F WG+   GR+G+  +
Sbjct: 275 PRRV-AIFIEKTKDGQILPVPNVVVRDVACGANHTLVLDSQKRVFSWGFGGYGRLGHAEQ 333

Query: 210 ALESSP 215
             E  P
Sbjct: 334 KDEMVP 339


>gi|440897095|gb|ELR48863.1| Protein RCC2, partial [Bos grunniens mutus]
          Length = 427

 Score = 94.4 bits (233), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 82/293 (27%), Positives = 130/293 (44%), Gaps = 35/293 (11%)

Query: 75  HSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAI 134
           HSL +T  G +W+WGRN + QLG G  +       P+ VEGL    + +A      + A+
Sbjct: 66  HSLLITTEGKLWSWGRNEKGQLGHGDTKRVEA---PRLVEGLSHEVIVSAACGRNHTLAL 122

Query: 135 GDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLF 194
            + GS++ +G++K GQLGLG        P+++    G+ I K++ G   ++     G L+
Sbjct: 123 TETGSVFAFGENKMGQLGLGNQTDAVPSPAQI-MYNGQPITKMACGAEFSMIMDCKGNLY 181

Query: 195 GWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPI 254
            +G    G++G+            N D    +  +      E   + V+  +EK K   I
Sbjct: 182 SFGCPEYGQLGH------------NSDGKFIARAQRIEYDCELVPRRVAIFIEKTKDGQI 229

Query: 255 IWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFHP 314
           +  P +V    V D+ACG +H+LVL     + S G   YG+LG  +Q   M P  +    
Sbjct: 230 LPVPNVV----VRDVACGANHTLVLDSQKRVFSWGFGGYGRLGHAEQKDEMVPRLVKLFD 285

Query: 315 V------SISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPDNV 361
                   I +G   S A+ EV          G+  WG   +S+   M P  V
Sbjct: 286 FPGRGASQIYAGYTCSFAVSEV---------GGLFFWGATNTSRESTMYPKAV 329



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 57/186 (30%), Positives = 80/186 (43%), Gaps = 31/186 (16%)

Query: 56  PTRVPGLPSDV-TSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVE 114
           P  V GL  +V  S + G  H+LA+T  G+V+A+G N   QLG G      T   P   +
Sbjct: 98  PRLVEGLSHEVIVSAACGRNHTLALTETGSVFAFGENKMGQLGLG----NQTDAVPSPAQ 153

Query: 115 GLDQVNVCAAFASGVVSSAIGD-DGSLWVWGKSKRGQLGL---GKDITEA--------IV 162
            +         A G   S I D  G+L+ +G  + GQLG    GK I  A        +V
Sbjct: 154 IMYNGQPITKMACGAEFSMIMDCKGNLYSFGCPEYGQLGHNSDGKFIARAQRIEYDCELV 213

Query: 163 PSRVEALAGEK-------------IVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGK 209
           P RV A+  EK             +  V+ G  H L      ++F WG+   GR+G+  +
Sbjct: 214 PRRV-AIFIEKTKDGQILPVPNVVVRDVACGANHTLVLDSQKRVFSWGFGGYGRLGHAEQ 272

Query: 210 ALESSP 215
             E  P
Sbjct: 273 KDEMVP 278


>gi|402880675|ref|XP_003903923.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC4 isoform 1
           [Papio anubis]
          Length = 1049

 Score = 94.4 bits (233), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 65/245 (26%), Positives = 114/245 (46%), Gaps = 43/245 (17%)

Query: 55  EPTRVPGLPS-DVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRV 113
           +P +V  L + ++ +VS G  H+LA+ + G V+AWG +++ QLG   L S      P+ +
Sbjct: 74  KPEQVVALDAQNIVAVSCGEAHTLALNDKGQVYAWGLDSDGQLG--LLGSEECIRVPRNI 131

Query: 114 EGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEK 173
           + L  + +         S A+     ++ WG++K GQLGLG D  +   P  +++L G  
Sbjct: 132 KSLSDIQIIQVACGYYHSLALSKASEVFCWGQNKYGQLGLGTDCKKQTSPQLIKSLLGIP 191

Query: 174 IVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSS 233
            ++V+ G  H+   T  G +FGWG +  G++G          L+                
Sbjct: 192 FMQVAAGGAHSFVLTLSGAIFGWGRNKFGQLG----------LND--------------- 226

Query: 234 TIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVY 293
                        E ++Y+P + +   +   ++V I CG DH+  L + G + + G+  Y
Sbjct: 227 -------------ENDRYVPNLLKS--LRSQKIVYICCGEDHTAALTKEGGVFTFGAGGY 271

Query: 294 GQLGR 298
           GQLG 
Sbjct: 272 GQLGH 276



 Score = 80.9 bits (198), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 61/192 (31%), Positives = 100/192 (52%), Gaps = 16/192 (8%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVP-GLPS----DVTSVSAGHYHSLAVTNNG 83
           V ++G  S G LGL      +G +  E  RVP  + S     +  V+ G+YHSLA++   
Sbjct: 105 VYAWGLDSDGQLGL------LGSE--ECIRVPRNIKSLSDIQIIQVACGYYHSLALSKAS 156

Query: 84  AVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVW 143
            V+ WG+N   QLG G    + T   P+ ++ L  +      A G  S  +   G+++ W
Sbjct: 157 EVFCWGQNKYGQLGLGTDCKKQT--SPQLIKSLLGIPFMQVAAGGAHSFVLTLSGAIFGW 214

Query: 144 GKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGR 203
           G++K GQLGL  D  +  VP+ +++L  +KIV +  G  H  A T++G +F +G    G+
Sbjct: 215 GRNKFGQLGLN-DENDRYVPNLLKSLRSQKIVYICCGEDHTAALTKEGGVFTFGAGGYGQ 273

Query: 204 IGNLGKALESSP 215
           +G+   + E +P
Sbjct: 274 LGHNSTSHEINP 285



 Score = 70.9 bits (172), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 67/273 (24%), Positives = 111/273 (40%), Gaps = 57/273 (20%)

Query: 87  AWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKS 146
            WG  +  QLG G ++      +P++ +      V         +  + DDG+++  G +
Sbjct: 3   CWGNASFGQLGLGGIDEEIVL-EPRKSDFFINKKVRDVGCGLRHTVFVLDDGTVYTCGCN 61

Query: 147 KRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGN 206
             GQLG  K   +   P +V AL  + IV VS G  H LA  + G+++ WG  +DG++G 
Sbjct: 62  DLGQLGHEKSRKK---PEQVVALDAQNIVAVSCGEAHTLALNDKGQVYAWGLDSDGQLGL 118

Query: 207 LGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEV 266
           LG   E   +  NI   S+                                      +++
Sbjct: 119 LGSE-ECIRVPRNIKSLSD--------------------------------------IQI 139

Query: 267 VDIACGFDHSLVLGRNGVLLSCGSNVYGQLG-----REKQDMGMFPVDINFHPVSISSGL 321
           + +ACG+ HSL L +   +   G N YGQLG     +++    +    +    + +++G 
Sbjct: 140 IQVACGYYHSLALSKASEVFCWGQNKYGQLGLGTDCKKQTSPQLIKSLLGIPFMQVAAGG 199

Query: 322 GHSLAICEVRSSNVTGGARGIVSWGWNRSSQLG 354
            HS  +          GA  I  WG N+  QLG
Sbjct: 200 AHSFVL-------TLSGA--IFGWGRNKFGQLG 223


>gi|325180310|emb|CCA14713.1| regulator of chromosome condensation (RCC1)like protein putative
           [Albugo laibachii Nc14]
          Length = 393

 Score = 94.4 bits (233), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 87/310 (28%), Positives = 135/310 (43%), Gaps = 64/310 (20%)

Query: 79  VTNNGAVWAWGRNNEVQLGRGALES---RATWND--PKRVEGLDQVNVCAAFASGVVSSA 133
           ++    V+ WG   + QLG G+ E    R+++ +  P+ +E  +  N+         S+A
Sbjct: 1   MSTQSTVFTWGTGTQGQLGHGSFEKTGIRSSYEELSPRILETFEGKNIAKLDFGATHSAA 60

Query: 134 IGDDGSLWVWGKSKRGQLGLG---KDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTED 190
           I  +G L+ WG ++  QLG G   +DI    +P  V+AL G KIV +S G  H  A  E+
Sbjct: 61  IDKEGKLYTWGSNEYHQLGHGSSNQDIQS--IPRVVDALRGIKIVDISCGEYHTGAVDEE 118

Query: 191 GKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEK 250
           GKLF WG+                                  ST++ +  L   G E E 
Sbjct: 119 GKLFTWGWGG--------------------------------STMKGSGALGHAGGEDES 146

Query: 251 YMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDI 310
            +P +    + +GV V  + CG  H++ L ++G + + G+  YG+LG    D    P  +
Sbjct: 147 -IPRLVRTLVDQGVPVKSVECGELHTVALTKDGEIWAWGNGEYGRLGNGASDNFEVPEPV 205

Query: 311 NFHP----VSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMG--------P 358
            +       SIS+G   + AI E            + SWG N  SQLG  G         
Sbjct: 206 EYFADENIASISAGRDFTFAITEHGE---------VYSWGINSHSQLGLGGGLTVDYYNM 256

Query: 359 DNVPLVVEGL 368
           + +P+VVE L
Sbjct: 257 ETIPVVVEAL 266



 Score = 83.6 bits (205), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 52/142 (36%), Positives = 77/142 (54%), Gaps = 10/142 (7%)

Query: 61  GLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVN 120
           G+P  V SV  G  H++A+T +G +WAWG     +LG GA ++   +  P+ VE     N
Sbjct: 158 GVP--VKSVECGELHTVALTKDGEIWAWGNGEYGRLGNGASDN---FEVPEPVEYFADEN 212

Query: 121 VCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDIT-----EAIVPSRVEALAGEKIV 175
           + +  A    + AI + G ++ WG +   QLGLG  +T        +P  VEAL+   + 
Sbjct: 213 IASISAGRDFTFAITEHGEVYSWGINSHSQLGLGGGLTVDYYNMETIPVVVEALSNVNVA 272

Query: 176 KVSFGWGHALAQTEDGKLFGWG 197
           +VS G+ HA A T DGK+F WG
Sbjct: 273 QVSAGYDHAAAVTNDGKMFMWG 294



 Score = 71.2 bits (173), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 78/288 (27%), Positives = 131/288 (45%), Gaps = 34/288 (11%)

Query: 66  VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWND--PKRVEGL-DQ-VNV 121
           +  +S G YH+ AV   G ++ WG       G GAL      ++  P+ V  L DQ V V
Sbjct: 102 IVDISCGEYHTGAVDEEGKLFTWGWGGSTMKGSGALGHAGGEDESIPRLVRTLVDQGVPV 161

Query: 122 CAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLG-KDITEAIVPSRVEALAGEKIVKVSFG 180
            +     + + A+  DG +W WG  + G+LG G  D  E  VP  VE  A E I  +S G
Sbjct: 162 KSVECGELHTVALTKDGEIWAWGNGEYGRLGNGASDNFE--VPEPVEYFADENIASISAG 219

Query: 181 WGHALAQTEDGKLFGWGYSADGRIGNLGKAL-------ESSPLD----SNIDRSSESDQE 229
                A TE G+++ WG ++  ++G LG  L       E+ P+     SN++ +  S   
Sbjct: 220 RDFTFAITEHGEVYSWGINSHSQLG-LGGGLTVDYYNMETIPVVVEALSNVNVAQVSAGY 278

Query: 230 ISSSTIEKAQKLVSEGMEKEKYMPIIW-EPF---LVEGVEVVDIACGFDHSLVLGRNGVL 285
             ++ +    K+   G +       +W EP    +++   ++ + CG  ++  L  +G L
Sbjct: 279 DHAAAVTNDGKMFMWGAK-------LWLEPHEMTILKDETIISVQCGRYYTAALSASGNL 331

Query: 286 LSCG---SNVYGQLGREKQDMGMFPVDIN-FHPVSISSGLGHSLAICE 329
            + G   SN  G   R+ Q   +    +N ++ VS++ G  H  A+ +
Sbjct: 332 FTFGKGHSNCLGHGERKTQLQPLLVESLNRYNVVSMTCGYSHMGALTK 379



 Score = 62.0 bits (149), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 76/300 (25%), Positives = 128/300 (42%), Gaps = 39/300 (13%)

Query: 27  TAVVSFGDGSQGALGLPT-SLTGVGGDAYEPTRVPGLPS----DVTSVSAGHYHSLAVTN 81
           + V ++G G+QG LG  +   TG+   +YE      L +    ++  +  G  HS A+  
Sbjct: 5   STVFTWGTGTQGQLGHGSFEKTGIR-SSYEELSPRILETFEGKNIAKLDFGATHSAAIDK 63

Query: 82  NGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNV----CAAFASGVVSSAIGDD 137
            G ++ WG N   QLG G+  ++   + P+ V+ L  + +    C  + +G    A+ ++
Sbjct: 64  EGKLYTWGSNEYHQLGHGS-SNQDIQSIPRVVDALRGIKIVDISCGEYHTG----AVDEE 118

Query: 138 GSLWVW---GKSKRGQLGLGKDITE-AIVPSRVEALA--GEKIVKVSFGWGHALAQTEDG 191
           G L+ W   G + +G   LG    E   +P  V  L   G  +  V  G  H +A T+DG
Sbjct: 119 GKLFTWGWGGSTMKGSGALGHAGGEDESIPRLVRTLVDQGVPVKSVECGELHTVALTKDG 178

Query: 192 KLFGWGYSADGRIGNLGKALESSP------LDSNIDRSSESDQ---------EISSSTIE 236
           +++ WG    GR+GN        P       D NI   S             E+ S  I 
Sbjct: 179 EIWAWGNGEYGRLGNGASDNFEVPEPVEYFADENIASISAGRDFTFAITEHGEVYSWGIN 238

Query: 237 KAQKLVSEGMEKEKYMPIIWEPFLVEG---VEVVDIACGFDHSLVLGRNGVLLSCGSNVY 293
              +L   G     Y  +   P +VE    V V  ++ G+DH+  +  +G +   G+ ++
Sbjct: 239 SHSQLGLGGGLTVDYYNMETIPVVVEALSNVNVAQVSAGYDHAAAVTNDGKMFMWGAKLW 298


>gi|383411601|gb|AFH29014.1| putative E3 ubiquitin-protein ligase HERC4 isoform b [Macaca
           mulatta]
          Length = 1049

 Score = 94.4 bits (233), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 65/245 (26%), Positives = 114/245 (46%), Gaps = 43/245 (17%)

Query: 55  EPTRVPGLPS-DVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRV 113
           +P +V  L + ++ +VS G  H+LA+ + G V+AWG +++ QLG   L S      P+ +
Sbjct: 74  KPEQVVALDAQNIVAVSCGEAHTLALNDKGQVYAWGLDSDGQLG--LLGSEECIRVPRNI 131

Query: 114 EGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEK 173
           + L  + +         S A+     ++ WG++K GQLGLG D  +   P  +++L G  
Sbjct: 132 KSLSDIQIIQVACGYYHSLALSKASEVFCWGQNKYGQLGLGTDCKKQTSPQLIKSLLGIP 191

Query: 174 IVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSS 233
            ++V+ G  H+   T  G +FGWG +  G++G          L+                
Sbjct: 192 FMQVAAGGAHSFVLTLSGAIFGWGRNKFGQLG----------LND--------------- 226

Query: 234 TIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVY 293
                        E ++Y+P + +   +   ++V I CG DH+  L + G + + G+  Y
Sbjct: 227 -------------ENDRYVPNLLKS--LRSQKIVYICCGEDHTAALTKEGGVFTFGAGGY 271

Query: 294 GQLGR 298
           GQLG 
Sbjct: 272 GQLGH 276



 Score = 80.9 bits (198), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 61/192 (31%), Positives = 100/192 (52%), Gaps = 16/192 (8%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVP-GLPS----DVTSVSAGHYHSLAVTNNG 83
           V ++G  S G LGL      +G +  E  RVP  + S     +  V+ G+YHSLA++   
Sbjct: 105 VYAWGLDSDGQLGL------LGSE--ECIRVPRNIKSLSDIQIIQVACGYYHSLALSKAS 156

Query: 84  AVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVW 143
            V+ WG+N   QLG G    + T   P+ ++ L  +      A G  S  +   G+++ W
Sbjct: 157 EVFCWGQNKYGQLGLGTDCKKQT--SPQLIKSLLGIPFMQVAAGGAHSFVLTLSGAIFGW 214

Query: 144 GKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGR 203
           G++K GQLGL  D  +  VP+ +++L  +KIV +  G  H  A T++G +F +G    G+
Sbjct: 215 GRNKFGQLGLN-DENDRYVPNLLKSLRSQKIVYICCGEDHTAALTKEGGVFTFGAGGYGQ 273

Query: 204 IGNLGKALESSP 215
           +G+   + E +P
Sbjct: 274 LGHNSTSHEINP 285



 Score = 70.9 bits (172), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 67/273 (24%), Positives = 111/273 (40%), Gaps = 57/273 (20%)

Query: 87  AWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKS 146
            WG  +  QLG G ++      +P++ +      V         +  + DDG+++  G +
Sbjct: 3   CWGNASFGQLGLGGIDEEIVL-EPRKSDFFINKKVRDVGCGLRHTVFVLDDGTVYTCGCN 61

Query: 147 KRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGN 206
             GQLG  K   +   P +V AL  + IV VS G  H LA  + G+++ WG  +DG++G 
Sbjct: 62  DLGQLGHEKSRKK---PEQVVALDAQNIVAVSCGEAHTLALNDKGQVYAWGLDSDGQLGL 118

Query: 207 LGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEV 266
           LG   E   +  NI   S+                                      +++
Sbjct: 119 LGSE-ECIRVPRNIKSLSD--------------------------------------IQI 139

Query: 267 VDIACGFDHSLVLGRNGVLLSCGSNVYGQLG-----REKQDMGMFPVDINFHPVSISSGL 321
           + +ACG+ HSL L +   +   G N YGQLG     +++    +    +    + +++G 
Sbjct: 140 IQVACGYYHSLALSKASEVFCWGQNKYGQLGLGTDCKKQTSPQLIKSLLGIPFMQVAAGG 199

Query: 322 GHSLAICEVRSSNVTGGARGIVSWGWNRSSQLG 354
            HS  +          GA  I  WG N+  QLG
Sbjct: 200 AHSFVL-------TLSGA--IFGWGRNKFGQLG 223


>gi|357464765|ref|XP_003602664.1| RCC1 and BTB domain-containing protein [Medicago truncatula]
 gi|358348400|ref|XP_003638235.1| RCC1 and BTB domain-containing protein [Medicago truncatula]
 gi|355491712|gb|AES72915.1| RCC1 and BTB domain-containing protein [Medicago truncatula]
 gi|355504170|gb|AES85373.1| RCC1 and BTB domain-containing protein [Medicago truncatula]
          Length = 439

 Score = 94.4 bits (233), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 90/336 (26%), Positives = 150/336 (44%), Gaps = 65/336 (19%)

Query: 25  SGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSD-VTSVSAGHYHSLAVTNNG 83
           SG  V S+G G  G LG      G   D   PT++  L +  + SV  G  H+LA + + 
Sbjct: 32  SGNVVCSWGRGEDGQLG-----HGDTDDRLLPTQLSALDAQQIVSVVCGADHTLAYSESK 86

Query: 84  A-VWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWV 142
             V++WG  +  +LG G   + +    P+ +  L  + +           A+  +G +  
Sbjct: 87  VEVYSWGWGDFGRLGHG---NSSDLFIPQPIRALQGLRIKQIACGDSHCLAVTMEGEVQS 143

Query: 143 WGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADG 202
           WG+++ GQLGLG    +++VP +++   G  I  V+ G  H++A TE+G+L+GWG+   G
Sbjct: 144 WGRNQNGQLGLGT-TEDSLVPQKIQTFQGVPIKMVAAGAEHSVAITENGELYGWGW---G 199

Query: 203 RIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVE 262
           R GNLG                                    G   ++ +P   E   V+
Sbjct: 200 RYGNLGL-----------------------------------GDRNDRCIP---EKVSVD 221

Query: 263 GVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFHP----VSIS 318
             ++V +ACG+ H++ +  +G L + G + YGQLG       + P  +          +S
Sbjct: 222 CDKMVLVACGWRHTISVSSSGELYTYGWSKYGQLGHGDCKDHLVPHKLQAFSDKLICQVS 281

Query: 319 SGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLG 354
            G  H++A+        TGG   +  WGWN+  Q+G
Sbjct: 282 GGWRHTMAL-------TTGGQ--LYGWGWNKFGQVG 308



 Score = 91.7 bits (226), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 94/354 (26%), Positives = 148/354 (41%), Gaps = 68/354 (19%)

Query: 23  SASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPS-DVTSVSAGHYHSLAVTN 81
           S S   V S+G G  G LG      G   D + P  +  L    +  ++ G  H LAVT 
Sbjct: 83  SESKVEVYSWGWGDFGRLG-----HGNSSDLFIPQPIRALQGLRIKQIACGDSHCLAVTM 137

Query: 82  NGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLW 141
            G V +WGRN   QLG G  E       P++++    V +    A    S AI ++G L+
Sbjct: 138 EGEVQSWGRNQNGQLGLGTTEDSLV---PQKIQTFQGVPIKMVAAGAEHSVAITENGELY 194

Query: 142 VWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSAD 201
            WG  + G LGLG D  +  +P +V ++  +K+V V+ GW H ++ +  G+L+ +G+S  
Sbjct: 195 GWGWGRYGNLGLG-DRNDRCIPEKV-SVDCDKMVLVACGWRHTISVSSSGELYTYGWSKY 252

Query: 202 GRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLV 261
           G++G+                                      G  K+  +P   + F  
Sbjct: 253 GQLGH--------------------------------------GDCKDHLVPHKLQAF-- 272

Query: 262 EGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINF----HPVSI 317
               +  ++ G+ H++ L   G L   G N +GQ+G         PV + F        I
Sbjct: 273 SDKLICQVSGGWRHTMALTTGGQLYGWGWNKFGQVGVGDNVDRCSPVQVKFPHDQKVAQI 332

Query: 318 SSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPD---NVPLVVEGL 368
           S G  H++A+ E            + SWG   + QLG +G     N P ++E L
Sbjct: 333 SCGWRHTIAVTE---------KDNVYSWGRGTNGQLG-IGDTIDWNYPKIIEAL 376



 Score = 71.2 bits (173), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 57/229 (24%), Positives = 109/229 (47%), Gaps = 21/229 (9%)

Query: 32  FGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRN 91
           +G G  G LGL     G   D   P +V      +  V+ G  H+++V+++G ++ +G +
Sbjct: 196 WGWGRYGNLGL-----GDRNDRCIPEKVSVDCDKMVLVACGWRHTISVSSSGELYTYGWS 250

Query: 92  NEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQL 151
              QLG G  +       P +++      +C        + A+   G L+ WG +K GQ+
Sbjct: 251 KYGQLGHGDCKDHLV---PHKLQAFSDKLICQVSGGWRHTMALTTGGQLYGWGWNKFGQV 307

Query: 152 GLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIG------ 205
           G+G ++ +   P +V+    +K+ ++S GW H +A TE   ++ WG   +G++G      
Sbjct: 308 GVGDNV-DRCSPVQVKFPHDQKVAQISCGWRHTIAVTEKDNVYSWGRGTNGQLGIGDTID 366

Query: 206 -NLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMP 253
            N  K +E+  +D +  +  E     SS+T + + K ++   E+   +P
Sbjct: 367 WNYPKIIEALSVDGSCGQHIE-----SSNTDQLSGKTLASLAERYAVVP 410


>gi|149720067|ref|XP_001501726.1| PREDICTED: secretion-regulating guanine nucleotide exchange factor
           [Equus caballus]
          Length = 444

 Score = 94.4 bits (233), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 96/315 (30%), Positives = 140/315 (44%), Gaps = 47/315 (14%)

Query: 29  VVSFGDGSQGALGLPT-SLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWA 87
           V+S G  S G LG+P      V   A EP R       V S++AG  H+LA T +G V+ 
Sbjct: 104 VLSCGSNSFGQLGVPHGPRRCVVPQAIEPLR-----EKVVSIAAGLRHALAATASGIVFQ 158

Query: 88  WGR---NNEVQLGRG-ALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVW 143
           WG    ++  +L  G  L    T  +P RV GL+        A    S+++ D G L+VW
Sbjct: 159 WGTGLASSGRRLCPGETLPLFLTAKEPSRVTGLEDSKATCVVAGSDHSASLTDAGELYVW 218

Query: 144 GKSKRGQLGLGKDITEAIVPSRVEA--LAGEKIVKVSFGWGHALAQTEDGKLFGWGYSAD 201
           G +K GQL          VP ++EA     EK+  V  GW H +AQTE GK+F WG +  
Sbjct: 219 GSNKHGQLA--SQAAFLPVPQKIEAHCFQHEKVTAVWSGWTHLVAQTETGKVFTWGRA-- 274

Query: 202 GRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLV 261
              G LG+ LES                       +  +L  +G+      P    P  +
Sbjct: 275 -DYGQLGRKLES----------------------HENWRLDMQGLSLPCPRPQKSTPSPL 311

Query: 262 EGVE-VVDIACGFDHSL-VLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFHPVS--- 316
             +    +++CG +H+L V+G  G   S G N +G  G   +     P  +    +S   
Sbjct: 312 HCLTGATEVSCGSEHNLAVIG--GACYSWGWNEHGMCGDGTEANIWAPKPVQSLRLSSGL 369

Query: 317 -ISSGLGHSLAICEV 330
            +  G GHSLA+C++
Sbjct: 370 LVGCGAGHSLALCQL 384



 Score = 65.9 bits (159), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 81/332 (24%), Positives = 135/332 (40%), Gaps = 54/332 (16%)

Query: 63  PSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVC 122
           P  V  ++ G  HS  VT+ G+++  G N + QLG G  E    +   + + G     V 
Sbjct: 30  PGCVRRITGGGGHSAVVTDGGSLFVCGLNKDGQLGLGHTEDVLYFTPCRSLLGCPIQQVA 89

Query: 123 AAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWG 182
             +   ++   +  +G +   G +  GQLG+       +VP  +E L  EK+V ++ G  
Sbjct: 90  CGWDFTII---LTGNGQVLSCGSNSFGQLGVPHGPRRCVVPQAIEPLR-EKVVSIAAGLR 145

Query: 183 HALAQTEDGKLFGW--GYSADGRIGNLGKALE---SSPLDSNIDRSSESDQEI------S 231
           HALA T  G +F W  G ++ GR    G+ L    ++   S +    +S           
Sbjct: 146 HALAATASGIVFQWGTGLASSGRRLCPGETLPLFLTAKEPSRVTGLEDSKATCVVAGSDH 205

Query: 232 SSTIEKAQKLVSEGMEKE-------KYMPIIW--EPFLVEGVEVVDIACGFDHSLVLGRN 282
           S+++  A +L   G  K         ++P+    E    +  +V  +  G+ H +     
Sbjct: 206 SASLTDAGELYVWGSNKHGQLASQAAFLPVPQKIEAHCFQHEKVTAVWSGWTHLVAQTET 265

Query: 283 GVLLSCGSNVYGQLGREKQDMGMFPVDIN----------------FHPVS----ISSGLG 322
           G + + G   YGQLGR+ +    + +D+                  H ++    +S G  
Sbjct: 266 GKVFTWGRADYGQLGRKLESHENWRLDMQGLSLPCPRPQKSTPSPLHCLTGATEVSCGSE 325

Query: 323 HSLAICEVRSSNVTGGARGIVSWGWNRSSQLG 354
           H+LA        V GGA    SWGWN     G
Sbjct: 326 HNLA--------VIGGA--CYSWGWNEHGMCG 347



 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 63/237 (26%), Positives = 98/237 (41%), Gaps = 66/237 (27%)

Query: 144 GKSKRGQLGLGKDITEAIVPSRVEALAGEKIVK-VSFGWGHALAQTEDGKLFGWGYSADG 202
           G +  GQLGLG    + ++P ++        V+ ++ G GH+   T+ G LF  G + DG
Sbjct: 3   GANSYGQLGLGHK-EDVLLPQQLNDFCKPGCVRRITGGGGHSAVVTDGGSLFVCGLNKDG 61

Query: 203 RIG--NLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFL 260
           ++G  +    L  +P  S +                                        
Sbjct: 62  QLGLGHTEDVLYFTPCRSLL---------------------------------------- 81

Query: 261 VEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLG------REKQDMGMFPVDINFHP 314
             G  +  +ACG+D +++L  NG +LSCGSN +GQLG      R      + P+      
Sbjct: 82  --GCPIQQVACGWDFTIILTGNGQVLSCGSNSFGQLGVPHGPRRCVVPQAIEPLREKV-- 137

Query: 315 VSISSGLGHSLAICEVRSSNVTGGARGIV-SWGWNRSSQLGRMGP-DNVPLVVEGLE 369
           VSI++GL H+LA            A GIV  WG   +S   R+ P + +PL +   E
Sbjct: 138 VSIAAGLRHALA----------ATASGIVFQWGTGLASSGRRLCPGETLPLFLTAKE 184


>gi|149689920|ref|XP_001503636.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC4-like isoform
           2 [Equus caballus]
          Length = 1057

 Score = 94.4 bits (233), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 78/316 (24%), Positives = 136/316 (43%), Gaps = 49/316 (15%)

Query: 55  EPTRVPGLPS-DVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRV 113
           +P +V  L + ++ +VS G  H+LA+ + G V+AWG +++ QLG   L S      P+ +
Sbjct: 74  KPEQVVALDAQNIVAVSCGEAHTLALNDKGQVYAWGLDSDGQLG--LLGSEECIRVPRNI 131

Query: 114 EGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEK 173
           + L  + +         S A+     ++ WG++K GQLGLG D  +   P  +++L G  
Sbjct: 132 KSLSDIQIVQVACGYYHSLALSKASEVFCWGQNKYGQLGLGIDYKKQASPQLIKSLLGIP 191

Query: 174 IVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSS 233
            ++V+ G  H+   T  G +FGWG +  G++G          L+                
Sbjct: 192 FMQVAAGGAHSFVLTLSGAIFGWGRNKFGQLG----------LND--------------- 226

Query: 234 TIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVY 293
                        E ++Y P + +    +  ++V I CG DH+  L + G + + G+  Y
Sbjct: 227 -------------ENDRYFPNLLKSLRTQ--KIVYICCGEDHTAALTKEGGVFTFGAGGY 271

Query: 294 GQLGREKQDMGMFPVDINFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQL 353
           GQLG       + P  +      +   +   +A     +S     +  I S+G   + QL
Sbjct: 272 GQLGHNSTSHEINPRKV----FELMGSIVTQIACGRQHTSAFVPSSGRIYSFGLGGNGQL 327

Query: 354 GRMGPDN--VPLVVEG 367
           G     N   P  V+G
Sbjct: 328 GTGSTSNRKSPFTVKG 343



 Score = 68.9 bits (167), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 67/273 (24%), Positives = 110/273 (40%), Gaps = 57/273 (20%)

Query: 87  AWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKS 146
            WG  +  QLG G ++      +P++ +      V         +  +  DG+++  G +
Sbjct: 3   CWGNASFGQLGLGGIDEEIVL-EPRKSDFFINKKVRDVGCGLRHTVFVLHDGTVYTCGCN 61

Query: 147 KRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGN 206
             GQLG  K   +   P +V AL  + IV VS G  H LA  + G+++ WG  +DG++G 
Sbjct: 62  DLGQLGHEKSRKK---PEQVVALDAQNIVAVSCGEAHTLALNDKGQVYAWGLDSDGQLGL 118

Query: 207 LGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEV 266
           LG   E   +  NI   S+                                      +++
Sbjct: 119 LGSE-ECIRVPRNIKSLSD--------------------------------------IQI 139

Query: 267 VDIACGFDHSLVLGRNGVLLSCGSNVYGQLG-----REKQDMGMFPVDINFHPVSISSGL 321
           V +ACG+ HSL L +   +   G N YGQLG     +++    +    +    + +++G 
Sbjct: 140 VQVACGYYHSLALSKASEVFCWGQNKYGQLGLGIDYKKQASPQLIKSLLGIPFMQVAAGG 199

Query: 322 GHSLAICEVRSSNVTGGARGIVSWGWNRSSQLG 354
            HS  +          GA  I  WG N+  QLG
Sbjct: 200 AHSFVL-------TLSGA--IFGWGRNKFGQLG 223


>gi|149689922|ref|XP_001503631.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC4-like isoform
           1 [Equus caballus]
          Length = 1049

 Score = 94.4 bits (233), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 78/316 (24%), Positives = 136/316 (43%), Gaps = 49/316 (15%)

Query: 55  EPTRVPGLPS-DVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRV 113
           +P +V  L + ++ +VS G  H+LA+ + G V+AWG +++ QLG   L S      P+ +
Sbjct: 74  KPEQVVALDAQNIVAVSCGEAHTLALNDKGQVYAWGLDSDGQLG--LLGSEECIRVPRNI 131

Query: 114 EGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEK 173
           + L  + +         S A+     ++ WG++K GQLGLG D  +   P  +++L G  
Sbjct: 132 KSLSDIQIVQVACGYYHSLALSKASEVFCWGQNKYGQLGLGIDYKKQASPQLIKSLLGIP 191

Query: 174 IVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSS 233
            ++V+ G  H+   T  G +FGWG +  G++G          L+                
Sbjct: 192 FMQVAAGGAHSFVLTLSGAIFGWGRNKFGQLG----------LND--------------- 226

Query: 234 TIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVY 293
                        E ++Y P + +    +  ++V I CG DH+  L + G + + G+  Y
Sbjct: 227 -------------ENDRYFPNLLKSLRTQ--KIVYICCGEDHTAALTKEGGVFTFGAGGY 271

Query: 294 GQLGREKQDMGMFPVDINFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQL 353
           GQLG       + P  +      +   +   +A     +S     +  I S+G   + QL
Sbjct: 272 GQLGHNSTSHEINPRKV----FELMGSIVTQIACGRQHTSAFVPSSGRIYSFGLGGNGQL 327

Query: 354 GRMGPDN--VPLVVEG 367
           G     N   P  V+G
Sbjct: 328 GTGSTSNRKSPFTVKG 343



 Score = 68.9 bits (167), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 67/273 (24%), Positives = 110/273 (40%), Gaps = 57/273 (20%)

Query: 87  AWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKS 146
            WG  +  QLG G ++      +P++ +      V         +  +  DG+++  G +
Sbjct: 3   CWGNASFGQLGLGGIDEEIVL-EPRKSDFFINKKVRDVGCGLRHTVFVLHDGTVYTCGCN 61

Query: 147 KRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGN 206
             GQLG  K   +   P +V AL  + IV VS G  H LA  + G+++ WG  +DG++G 
Sbjct: 62  DLGQLGHEKSRKK---PEQVVALDAQNIVAVSCGEAHTLALNDKGQVYAWGLDSDGQLGL 118

Query: 207 LGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEV 266
           LG   E   +  NI   S+                                      +++
Sbjct: 119 LGSE-ECIRVPRNIKSLSD--------------------------------------IQI 139

Query: 267 VDIACGFDHSLVLGRNGVLLSCGSNVYGQLG-----REKQDMGMFPVDINFHPVSISSGL 321
           V +ACG+ HSL L +   +   G N YGQLG     +++    +    +    + +++G 
Sbjct: 140 VQVACGYYHSLALSKASEVFCWGQNKYGQLGLGIDYKKQASPQLIKSLLGIPFMQVAAGG 199

Query: 322 GHSLAICEVRSSNVTGGARGIVSWGWNRSSQLG 354
            HS  +          GA  I  WG N+  QLG
Sbjct: 200 AHSFVL-------TLSGA--IFGWGRNKFGQLG 223


>gi|397486789|ref|XP_003814505.1| PREDICTED: protein RCC2 [Pan paniscus]
          Length = 507

 Score = 94.4 bits (233), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 81/293 (27%), Positives = 130/293 (44%), Gaps = 35/293 (11%)

Query: 75  HSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAI 134
           HSL +T  G +W+WGRN + QLG G  +       P+ +EGL    + +A      + A+
Sbjct: 146 HSLLITTEGKLWSWGRNEKGQLGHGDTKRVEA---PRLIEGLSHEVIVSAACGRNHTLAL 202

Query: 135 GDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLF 194
            + GS++ +G++K GQLGLG        P+++    G+ I K++ G   ++     G L+
Sbjct: 203 TETGSVFAFGENKMGQLGLGNQTDAVPSPAQI-MYNGQPITKMACGAEFSMIMDCKGNLY 261

Query: 195 GWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPI 254
            +G    G++G+            N D    +  +      E   + V+  +EK K   I
Sbjct: 262 SFGCPEYGQLGH------------NSDGKFIARAQRIEYDCELVPRRVAIFIEKTKDGQI 309

Query: 255 IWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFHP 314
           +  P +V    V D+ACG +H+LVL     + S G   YG+LG  +Q   M P  +    
Sbjct: 310 LPVPNVV----VRDVACGANHTLVLDSQKRVFSWGFGGYGRLGHAEQKDEMVPRLVKLFD 365

Query: 315 V------SISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPDNV 361
                   I +G   S A+ EV          G+  WG   +S+   M P  V
Sbjct: 366 FPGRGASQIYAGYTCSFAVSEV---------GGLFFWGATNTSRESTMYPKAV 409



 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 56/186 (30%), Positives = 80/186 (43%), Gaps = 31/186 (16%)

Query: 56  PTRVPGLPSDV-TSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVE 114
           P  + GL  +V  S + G  H+LA+T  G+V+A+G N   QLG G      T   P   +
Sbjct: 178 PRLIEGLSHEVIVSAACGRNHTLALTETGSVFAFGENKMGQLGLG----NQTDAVPSPAQ 233

Query: 115 GLDQVNVCAAFASGVVSSAIGD-DGSLWVWGKSKRGQLGL---GKDITEA--------IV 162
            +         A G   S I D  G+L+ +G  + GQLG    GK I  A        +V
Sbjct: 234 IMYNGQPITKMACGAEFSMIMDCKGNLYSFGCPEYGQLGHNSDGKFIARAQRIEYDCELV 293

Query: 163 PSRVEALAGEK-------------IVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGK 209
           P RV A+  EK             +  V+ G  H L      ++F WG+   GR+G+  +
Sbjct: 294 PRRV-AIFIEKTKDGQILPVPNVVVRDVACGANHTLVLDSQKRVFSWGFGGYGRLGHAEQ 352

Query: 210 ALESSP 215
             E  P
Sbjct: 353 KDEMVP 358


>gi|332218225|ref|XP_003258259.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC4 isoform 1
           [Nomascus leucogenys]
          Length = 1049

 Score = 94.4 bits (233), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 65/245 (26%), Positives = 114/245 (46%), Gaps = 43/245 (17%)

Query: 55  EPTRVPGLPS-DVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRV 113
           +P +V  L + ++ +VS G  H+LA+ + G V+AWG +++ QLG   L S      P+ +
Sbjct: 74  KPEQVVALDAQNIVAVSCGEAHTLALNDKGQVYAWGLDSDGQLG--LLGSEECIRVPRNI 131

Query: 114 EGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEK 173
           + L  + +         S A+     ++ WG++K GQLGLG D  +   P  +++L G  
Sbjct: 132 KSLSDIQIVQVACGYYHSLALSKASEVFCWGQNKYGQLGLGTDCKKQTSPQLLKSLVGIP 191

Query: 174 IVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSS 233
            ++V+ G  H+   T  G +FGWG +  G++G          L+                
Sbjct: 192 FMQVAAGGAHSFVLTLSGAIFGWGRNKFGQLG----------LND--------------- 226

Query: 234 TIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVY 293
                        E ++Y+P + +   +   ++V I CG DH+  L + G + + G+  Y
Sbjct: 227 -------------ENDRYVPNLLKS--LRSQKIVYICCGEDHTAALTKEGGVFTFGAGGY 271

Query: 294 GQLGR 298
           GQLG 
Sbjct: 272 GQLGH 276



 Score = 80.5 bits (197), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 61/192 (31%), Positives = 100/192 (52%), Gaps = 16/192 (8%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVP-GLPS----DVTSVSAGHYHSLAVTNNG 83
           V ++G  S G LGL      +G +  E  RVP  + S     +  V+ G+YHSLA++   
Sbjct: 105 VYAWGLDSDGQLGL------LGSE--ECIRVPRNIKSLSDIQIVQVACGYYHSLALSKAS 156

Query: 84  AVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVW 143
            V+ WG+N   QLG G    + T   P+ ++ L  +      A G  S  +   G+++ W
Sbjct: 157 EVFCWGQNKYGQLGLGTDCKKQT--SPQLLKSLVGIPFMQVAAGGAHSFVLTLSGAIFGW 214

Query: 144 GKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGR 203
           G++K GQLGL  D  +  VP+ +++L  +KIV +  G  H  A T++G +F +G    G+
Sbjct: 215 GRNKFGQLGLN-DENDRYVPNLLKSLRSQKIVYICCGEDHTAALTKEGGVFTFGAGGYGQ 273

Query: 204 IGNLGKALESSP 215
           +G+   + E +P
Sbjct: 274 LGHNSTSHEINP 285



 Score = 72.0 bits (175), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 68/273 (24%), Positives = 111/273 (40%), Gaps = 57/273 (20%)

Query: 87  AWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKS 146
            WG  +  QLG G ++      +P++ +      V         +  + DDG+++  G +
Sbjct: 3   CWGNASFGQLGLGGIDEEIVL-EPRKSDFFINKKVRDVGCGLRHTVFVLDDGTVYTCGCN 61

Query: 147 KRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGN 206
             GQLG  K   +   P +V AL  + IV VS G  H LA  + G+++ WG  +DG++G 
Sbjct: 62  DLGQLGHEKSRKK---PEQVVALDAQNIVAVSCGEAHTLALNDKGQVYAWGLDSDGQLGL 118

Query: 207 LGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEV 266
           LG   E   +  NI   S+                                      +++
Sbjct: 119 LGSE-ECIRVPRNIKSLSD--------------------------------------IQI 139

Query: 267 VDIACGFDHSLVLGRNGVLLSCGSNVYGQLG-----REKQDMGMFPVDINFHPVSISSGL 321
           V +ACG+ HSL L +   +   G N YGQLG     +++    +    +    + +++G 
Sbjct: 140 VQVACGYYHSLALSKASEVFCWGQNKYGQLGLGTDCKKQTSPQLLKSLVGIPFMQVAAGG 199

Query: 322 GHSLAICEVRSSNVTGGARGIVSWGWNRSSQLG 354
            HS  +          GA  I  WG N+  QLG
Sbjct: 200 AHSFVL-------TLSGA--IFGWGRNKFGQLG 223


>gi|426222850|ref|XP_004005595.1| PREDICTED: protein RCC2 [Ovis aries]
          Length = 655

 Score = 94.4 bits (233), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 81/293 (27%), Positives = 130/293 (44%), Gaps = 35/293 (11%)

Query: 75  HSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAI 134
           HSL +T  G +W+WGRN + QLG G  +       P+ +EGL    + +A      + A+
Sbjct: 294 HSLLITTEGKLWSWGRNEKGQLGHGDTKR---VEAPRLIEGLSHEVIVSAACGRNHTLAL 350

Query: 135 GDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLF 194
            + GS++ +G++K GQLGLG        P+++    G+ I K++ G   ++     G L+
Sbjct: 351 TETGSVFAFGENKMGQLGLGNQTDAVPSPAQI-MYNGQPITKMACGAEFSMIMDCKGNLY 409

Query: 195 GWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPI 254
            +G    G++G+            N D    +  +      E   + V+  +EK K   I
Sbjct: 410 SFGCPEYGQLGH------------NSDGKFIARAQRIEYDCELVPRRVAIFIEKTKDGQI 457

Query: 255 IWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFHP 314
           +  P +V    V D+ACG +H+LVL     + S G   YG+LG  +Q   M P  +    
Sbjct: 458 LPVPNVV----VRDVACGANHTLVLDSQKRVFSWGFGGYGRLGHAEQKDEMVPRLVKLFD 513

Query: 315 V------SISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPDNV 361
                   I +G   S A+ EV          G+  WG   +S+   M P  V
Sbjct: 514 FPGRGASQIYAGYTCSFAVSEV---------GGLFFWGATNTSRESTMYPKAV 557



 Score = 52.8 bits (125), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 56/186 (30%), Positives = 80/186 (43%), Gaps = 31/186 (16%)

Query: 56  PTRVPGLPSDV-TSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVE 114
           P  + GL  +V  S + G  H+LA+T  G+V+A+G N   QLG G      T   P   +
Sbjct: 326 PRLIEGLSHEVIVSAACGRNHTLALTETGSVFAFGENKMGQLGLG----NQTDAVPSPAQ 381

Query: 115 GLDQVNVCAAFASGVVSSAIGD-DGSLWVWGKSKRGQLGL---GKDITEA--------IV 162
            +         A G   S I D  G+L+ +G  + GQLG    GK I  A        +V
Sbjct: 382 IMYNGQPITKMACGAEFSMIMDCKGNLYSFGCPEYGQLGHNSDGKFIARAQRIEYDCELV 441

Query: 163 PSRVEALAGEK-------------IVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGK 209
           P RV A+  EK             +  V+ G  H L      ++F WG+   GR+G+  +
Sbjct: 442 PRRV-AIFIEKTKDGQILPVPNVVVRDVACGANHTLVLDSQKRVFSWGFGGYGRLGHAEQ 500

Query: 210 ALESSP 215
             E  P
Sbjct: 501 KDEMVP 506


>gi|50955670|ref|YP_062958.1| hypothetical protein Lxx21640 [Leifsonia xyli subsp. xyli str.
           CTCB07]
 gi|50952152|gb|AAT89853.1| conserved hypothetical protein [Leifsonia xyli subsp. xyli str.
           CTCB07]
          Length = 596

 Score = 94.4 bits (233), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 91/318 (28%), Positives = 135/318 (42%), Gaps = 33/318 (10%)

Query: 67  TSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFA 126
           T+VSAG   + A+ ++G V+AWG N   QLG G   +  T   P +V     V   A  A
Sbjct: 53  TAVSAGSLSAYALGDDGNVYAWGDNEYGQLGTGDTVNAHT---PVKVMLPAGVKFTALSA 109

Query: 127 SGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALA 186
             + + A+GDDG  + WG ++ GQLG G D   A  P +V   AG K   +S G   A A
Sbjct: 110 GSLSAYALGDDGHAYAWGDNEYGQLGTG-DTVNAHTPVKVMLPAGVKFTALSSGGPSAYA 168

Query: 187 QTEDGKLFGWGYSADGRIGNLGKALESSP----LDSNIDRSSESDQEISSSTIEKAQKLV 242
              DGK + WG++  G++G    A    P    + + +  ++ S   +S+  +    K  
Sbjct: 169 VGNDGKTYAWGFNGYGQLGTDTTADAHVPVAVAVPAGVSFTTLSGGSLSAYALGNDGKTY 228

Query: 243 SEGME----------KEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNV 292
           + G             + ++P+     +  GV    ++ G   +  LG +    + G N 
Sbjct: 229 AWGFNGYGQLGTDTTADAHVPVAVA--VPAGVSFTAVSAGVSSAYALGDDRKTYAWGDNE 286

Query: 293 YGQLGREKQDMGMFPVDINFHP----VSISSGLGHSLAICEVRSSNVTGGARGIVSWGWN 348
           YGQLGR        PV +        VS+S G G   A    R  N         +WG N
Sbjct: 287 YGQLGRGDTANAHAPVAVTVSAGETFVSVSGGAGSVYA----RGQN-----GDTYAWGDN 337

Query: 349 RSSQLGRMGPDNVPLVVE 366
              QLGR    N    +E
Sbjct: 338 DYGQLGRGDTANAHTPIE 355



 Score = 75.5 bits (184), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 72/270 (26%), Positives = 115/270 (42%), Gaps = 24/270 (8%)

Query: 119 VNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVS 178
           V   A  A  + + A+GDDG+++ WG ++ GQLG G D   A  P +V   AG K   +S
Sbjct: 50  VTFTAVSAGSLSAYALGDDGNVYAWGDNEYGQLGTG-DTVNAHTPVKVMLPAGVKFTALS 108

Query: 179 FGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSP----LDSNIDRSSESDQEISSST 234
            G   A A  +DG  + WG +  G++G        +P    L + +  ++ S    S+  
Sbjct: 109 AGSLSAYALGDDGHAYAWGDNEYGQLGTGDTVNAHTPVKVMLPAGVKFTALSSGGPSAYA 168

Query: 235 IEKAQKLVSEGME----------KEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGV 284
           +    K  + G             + ++P+     +  GV    ++ G   +  LG +G 
Sbjct: 169 VGNDGKTYAWGFNGYGQLGTDTTADAHVPVAVA--VPAGVSFTTLSGGSLSAYALGNDGK 226

Query: 285 LLSCGSNVYGQLGREKQDMGMFPVDINFHPVSISSGLGHSLAICEVRSSNVTGGARGIVS 344
             + G N YGQLG +       PV      V++ +G+  +     V S+   G  R   +
Sbjct: 227 TYAWGFNGYGQLGTDTTADAHVPV-----AVAVPAGVSFTAVSAGVSSAYALGDDRKTYA 281

Query: 345 WGWNRSSQLGRMGPDN--VPLVVEGLEGES 372
           WG N   QLGR    N   P+ V    GE+
Sbjct: 282 WGDNEYGQLGRGDTANAHAPVAVTVSAGET 311



 Score = 71.2 bits (173), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 56/168 (33%), Positives = 84/168 (50%), Gaps = 7/168 (4%)

Query: 52  DAYEPTRVPGLPSDV--TSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWND 109
           DA+ P  V  +P+ V  T++S G   + A+ N+G  +AWG N   QLG    ++ A  + 
Sbjct: 193 DAHVPVAV-AVPAGVSFTTLSGGSLSAYALGNDGKTYAWGFNGYGQLGT---DTTADAHV 248

Query: 110 PKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEAL 169
           P  V     V+  A  A    + A+GDD   + WG ++ GQLG G D   A  P  V   
Sbjct: 249 PVAVAVPAGVSFTAVSAGVSSAYALGDDRKTYAWGDNEYGQLGRG-DTANAHAPVAVTVS 307

Query: 170 AGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLD 217
           AGE  V VS G G   A+ ++G  + WG +  G++G    A   +P++
Sbjct: 308 AGETFVSVSGGAGSVYARGQNGDTYAWGDNDYGQLGRGDTANAHTPIE 355


>gi|392944589|ref|ZP_10310231.1| RCC1 domain-containing protein, alpha-tubulin suppressor [Frankia
           sp. QA3]
 gi|392287883|gb|EIV93907.1| RCC1 domain-containing protein, alpha-tubulin suppressor [Frankia
           sp. QA3]
          Length = 408

 Score = 94.4 bits (233), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 100/325 (30%), Positives = 137/325 (42%), Gaps = 71/325 (21%)

Query: 56  PTRVPGLP--SDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRV 113
           P RV GL   + V  ++AG Y   AV  +G  WAWG N   QLG G + + A    P RV
Sbjct: 70  PVRVTGLTGLTQVVGIAAGRYAGYAVHRDGTAWAWGYNAYGQLGNGTITNSAV---PVRV 126

Query: 114 EGLDQVNVCAAFASGVVSS-AIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGE 172
            GL +V    A A G V+  A+  DG++W WG +  GQLG G   T + VP RV  L  +
Sbjct: 127 SGLTRV---VALAGGSVNGYALRQDGTVWSWGYNNYGQLGNGT-TTNSRVPVRVVGL--D 180

Query: 173 KIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISS 232
           +++ ++ G     A  +DG ++ WGY+ +G++GN      +SPL                
Sbjct: 181 RVIAIASGGTTGYALRQDGTVWAWGYNDEGQLGN--GTTANSPL---------------- 222

Query: 233 STIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVE-VVDIACGFDHSLVLGRNGVLLSCGSN 291
                                    P  V G+  V  IA G +    L R+G + + G N
Sbjct: 223 -------------------------PVRVLGLHGVRAIAGGQETGYALRRDGTVWAWGHN 257

Query: 292 VYGQLGREKQDMGMFPVDI-NFHPVSISSGLGHSLAICEVRSSNVTGGARG---IVSWGW 347
            +GQLG         PV I N   V+         AI      N     RG     +WG 
Sbjct: 258 NHGQLGNGTVVSSTIPVAIRNLSEVT---------AIAASSEGNSGYALRGDGTAWAWGL 308

Query: 348 NRSSQLGRMGPDN--VPLVVEGLEG 370
           N + QLG    D   VP+ V G  G
Sbjct: 309 NNTGQLGNGTDDTSLVPVQVTGSTG 333



 Score = 88.2 bits (217), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 86/288 (29%), Positives = 128/288 (44%), Gaps = 32/288 (11%)

Query: 56  PTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEG 115
           P RV GL + V +++ G  +  A+  +G VW+WG NN  QLG G   +      P RV G
Sbjct: 123 PVRVSGL-TRVVALAGGSVNGYALRQDGTVWSWGYNNYGQLGNGTTTNSRV---PVRVVG 178

Query: 116 LDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIV 175
           LD+V   A  + G    A+  DG++W WG +  GQLG G      + P RV  L G + +
Sbjct: 179 LDRV--IAIASGGTTGYALRQDGTVWAWGYNDEGQLGNGTTANSPL-PVRVLGLHGVRAI 235

Query: 176 KVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTI 235
                 G+AL +  DG ++ WG++  G++GN    + SS +   I   SE     +SS  
Sbjct: 236 AGGQETGYALRR--DGTVWAWGHNNHGQLGN--GTVVSSTIPVAIRNLSEVTAIAASSEG 291

Query: 236 EKAQKLVSEGMEKEKYMPIIWE-----------PFLVEG----VEVVDIACGFDHSLVLG 280
                L  +G      +    +           P  V G    V V  I+ G      + 
Sbjct: 292 NSGYALRGDGTAWAWGLNNTGQLGNGTDDTSLVPVQVTGSTGLVGVTAISAGSFSGYAVR 351

Query: 281 RNGVLLSCGSNVYGQLGREKQDMGMFPVDINFHPVSISSGLGHSLAIC 328
           R+G + + GSN +GQLG      G      +  PV + SG+  + AI 
Sbjct: 352 RDGTVWAWGSNFFGQLGN-----GTTTPSFSLRPVRV-SGVARAEAIA 393



 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 45/132 (34%), Positives = 62/132 (46%), Gaps = 9/132 (6%)

Query: 64  SDVTSVSAGH--YHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEG-LDQVN 120
           S+VT+++A        A+  +G  WAWG NN  QLG G  ++      P +V G    V 
Sbjct: 280 SEVTAIAASSEGNSGYALRGDGTAWAWGLNNTGQLGNGTDDTSLV---PVQVTGSTGLVG 336

Query: 121 VCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITE-AIVPSRVEALA-GEKIVKVS 178
           V A  A      A+  DG++W WG +  GQLG G      ++ P RV  +A  E I    
Sbjct: 337 VTAISAGSFSGYAVRRDGTVWAWGSNFFGQLGNGTTTPSFSLRPVRVSGVARAEAIAGGG 396

Query: 179 FGWGHALAQTED 190
           F  G+ L  T D
Sbjct: 397 FS-GYTLVNTWD 407



 Score = 38.5 bits (88), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 36/96 (37%), Positives = 46/96 (47%), Gaps = 6/96 (6%)

Query: 33  GDGSQGALGLP-TSLTGVGGD--AYEPTRVPGLPS--DVTSVSAGHYHSLAVTNNGAVWA 87
           GDG+  A GL  T   G G D  +  P +V G      VT++SAG +   AV  +G VWA
Sbjct: 299 GDGTAWAWGLNNTGQLGNGTDDTSLVPVQVTGSTGLVGVTAISAGSFSGYAVRRDGTVWA 358

Query: 88  WGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCA 123
           WG N   QLG G      +   P RV G+ +    A
Sbjct: 359 WGSNFFGQLGNGTTTPSFSLR-PVRVSGVARAEAIA 393


>gi|332218227|ref|XP_003258260.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC4 isoform 2
           [Nomascus leucogenys]
          Length = 1057

 Score = 94.4 bits (233), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 65/245 (26%), Positives = 114/245 (46%), Gaps = 43/245 (17%)

Query: 55  EPTRVPGLPS-DVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRV 113
           +P +V  L + ++ +VS G  H+LA+ + G V+AWG +++ QLG   L S      P+ +
Sbjct: 74  KPEQVVALDAQNIVAVSCGEAHTLALNDKGQVYAWGLDSDGQLG--LLGSEECIRVPRNI 131

Query: 114 EGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEK 173
           + L  + +         S A+     ++ WG++K GQLGLG D  +   P  +++L G  
Sbjct: 132 KSLSDIQIVQVACGYYHSLALSKASEVFCWGQNKYGQLGLGTDCKKQTSPQLLKSLVGIP 191

Query: 174 IVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSS 233
            ++V+ G  H+   T  G +FGWG +  G++G          L+                
Sbjct: 192 FMQVAAGGAHSFVLTLSGAIFGWGRNKFGQLG----------LND--------------- 226

Query: 234 TIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVY 293
                        E ++Y+P + +   +   ++V I CG DH+  L + G + + G+  Y
Sbjct: 227 -------------ENDRYVPNLLKS--LRSQKIVYICCGEDHTAALTKEGGVFTFGAGGY 271

Query: 294 GQLGR 298
           GQLG 
Sbjct: 272 GQLGH 276



 Score = 80.5 bits (197), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 61/192 (31%), Positives = 100/192 (52%), Gaps = 16/192 (8%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVP-GLPS----DVTSVSAGHYHSLAVTNNG 83
           V ++G  S G LGL      +G +  E  RVP  + S     +  V+ G+YHSLA++   
Sbjct: 105 VYAWGLDSDGQLGL------LGSE--ECIRVPRNIKSLSDIQIVQVACGYYHSLALSKAS 156

Query: 84  AVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVW 143
            V+ WG+N   QLG G    + T   P+ ++ L  +      A G  S  +   G+++ W
Sbjct: 157 EVFCWGQNKYGQLGLGTDCKKQT--SPQLLKSLVGIPFMQVAAGGAHSFVLTLSGAIFGW 214

Query: 144 GKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGR 203
           G++K GQLGL  D  +  VP+ +++L  +KIV +  G  H  A T++G +F +G    G+
Sbjct: 215 GRNKFGQLGLN-DENDRYVPNLLKSLRSQKIVYICCGEDHTAALTKEGGVFTFGAGGYGQ 273

Query: 204 IGNLGKALESSP 215
           +G+   + E +P
Sbjct: 274 LGHNSTSHEINP 285



 Score = 72.0 bits (175), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 68/275 (24%), Positives = 112/275 (40%), Gaps = 57/275 (20%)

Query: 85  VWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWG 144
           +  WG  +  QLG G ++      +P++ +      V         +  + DDG+++  G
Sbjct: 1   MLCWGNASFGQLGLGGIDEEIVL-EPRKSDFFINKKVRDVGCGLRHTVFVLDDGTVYTCG 59

Query: 145 KSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRI 204
            +  GQLG  K   +   P +V AL  + IV VS G  H LA  + G+++ WG  +DG++
Sbjct: 60  CNDLGQLGHEKSRKK---PEQVVALDAQNIVAVSCGEAHTLALNDKGQVYAWGLDSDGQL 116

Query: 205 GNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGV 264
           G LG   E   +  NI   S+                                      +
Sbjct: 117 GLLGSE-ECIRVPRNIKSLSD--------------------------------------I 137

Query: 265 EVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLG-----REKQDMGMFPVDINFHPVSISS 319
           ++V +ACG+ HSL L +   +   G N YGQLG     +++    +    +    + +++
Sbjct: 138 QIVQVACGYYHSLALSKASEVFCWGQNKYGQLGLGTDCKKQTSPQLLKSLVGIPFMQVAA 197

Query: 320 GLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLG 354
           G  HS  +          GA  I  WG N+  QLG
Sbjct: 198 GGAHSFVL-------TLSGA--IFGWGRNKFGQLG 223


>gi|301755908|ref|XP_002913790.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC4-like isoform
           3 [Ailuropoda melanoleuca]
          Length = 1054

 Score = 94.4 bits (233), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 78/316 (24%), Positives = 137/316 (43%), Gaps = 49/316 (15%)

Query: 55  EPTRVPGLPS-DVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRV 113
           +P +V  L + ++ +VS G  H+LA+ + G V+AWG +++ QLG   L S      P+ +
Sbjct: 74  KPEQVVALDAQNIVAVSCGEAHTLALNDKGQVYAWGLDSDGQLG--LLGSEECIRVPRNI 131

Query: 114 EGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEK 173
           + L  + +         S A+     ++ WG++K GQLGLG D  +   P  +++L G  
Sbjct: 132 KSLSDIQIVQVACGYYHSLALSKASEVFCWGQNKYGQLGLGIDCKKQASPQLIKSLLGIP 191

Query: 174 IVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSS 233
            ++V+ G  H+   T  G +FGWG +  G++G          L+                
Sbjct: 192 FMQVAAGGAHSFVLTLSGAIFGWGRNKFGQLG----------LND--------------- 226

Query: 234 TIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVY 293
                        E ++Y+P + +    +  ++V I CG DH+  L + G + + G+  Y
Sbjct: 227 -------------ENDRYVPNLLKSLRTQ--KIVYICCGEDHTAALTKEGGVFTFGAGGY 271

Query: 294 GQLGREKQDMGMFPVDINFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQL 353
           GQLG       + P  +      +   +   +A     +S     +  I S+G   + QL
Sbjct: 272 GQLGHNSTSHEINPRKV----FELMGSIVTQIACGRQHTSAFVPSSGRIYSFGLGGNGQL 327

Query: 354 GRMGPDN--VPLVVEG 367
           G     N   P  V+G
Sbjct: 328 GTGSTSNRKSPFTVKG 343



 Score = 78.6 bits (192), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 60/192 (31%), Positives = 99/192 (51%), Gaps = 16/192 (8%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVP-GLPS----DVTSVSAGHYHSLAVTNNG 83
           V ++G  S G LGL      +G +  E  RVP  + S     +  V+ G+YHSLA++   
Sbjct: 105 VYAWGLDSDGQLGL------LGSE--ECIRVPRNIKSLSDIQIVQVACGYYHSLALSKAS 156

Query: 84  AVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVW 143
            V+ WG+N   QLG G    +     P+ ++ L  +      A G  S  +   G+++ W
Sbjct: 157 EVFCWGQNKYGQLGLGIDCKKQA--SPQLIKSLLGIPFMQVAAGGAHSFVLTLSGAIFGW 214

Query: 144 GKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGR 203
           G++K GQLGL  D  +  VP+ +++L  +KIV +  G  H  A T++G +F +G    G+
Sbjct: 215 GRNKFGQLGLN-DENDRYVPNLLKSLRTQKIVYICCGEDHTAALTKEGGVFTFGAGGYGQ 273

Query: 204 IGNLGKALESSP 215
           +G+   + E +P
Sbjct: 274 LGHNSTSHEINP 285



 Score = 71.6 bits (174), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 68/275 (24%), Positives = 112/275 (40%), Gaps = 57/275 (20%)

Query: 85  VWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWG 144
           +  WG  +  QLG G ++      +P++ +      V         +  + DDG+++  G
Sbjct: 1   MLCWGNASFGQLGLGGIDEEIVL-EPRKSDFFINKKVRDVGCGLRHTVFVLDDGTVYTCG 59

Query: 145 KSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRI 204
            +  GQLG  K   +   P +V AL  + IV VS G  H LA  + G+++ WG  +DG++
Sbjct: 60  CNDLGQLGHEKSRKK---PEQVVALDAQNIVAVSCGEAHTLALNDKGQVYAWGLDSDGQL 116

Query: 205 GNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGV 264
           G LG   E   +  NI   S+                                      +
Sbjct: 117 GLLGSE-ECIRVPRNIKSLSD--------------------------------------I 137

Query: 265 EVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLG-----REKQDMGMFPVDINFHPVSISS 319
           ++V +ACG+ HSL L +   +   G N YGQLG     +++    +    +    + +++
Sbjct: 138 QIVQVACGYYHSLALSKASEVFCWGQNKYGQLGLGIDCKKQASPQLIKSLLGIPFMQVAA 197

Query: 320 GLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLG 354
           G  HS  +          GA  I  WG N+  QLG
Sbjct: 198 GGAHSFVL-------TLSGA--IFGWGRNKFGQLG 223


>gi|157111251|ref|XP_001651453.1| hect E3 ubiquitin ligase [Aedes aegypti]
 gi|108878447|gb|EAT42672.1| AAEL005820-PA [Aedes aegypti]
          Length = 1057

 Score = 94.4 bits (233), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 80/288 (27%), Positives = 125/288 (43%), Gaps = 56/288 (19%)

Query: 16  TSRIFMRSASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSD-----VTSVS 70
           TS   + +  G  + S G+   G LG  T           P + P   S      VT VS
Sbjct: 45  TSHTLLLTKDG-KLFSCGNNDHGQLGHDTDCL--------PNKRPQFISSLENYIVTHVS 95

Query: 71  AGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVV 130
            G  HSLA+TN G V++WG N+  QLG        T+  P+ ++ +    V    +    
Sbjct: 96  CGTTHSLALTNWGQVFSWGSNSIGQLGHDT--DLQTYTTPRMIKTIATKTVVQIASGQFH 153

Query: 131 SSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTED 190
           S A+ + G L+ WG +  GQLGLG    + + P+ V++LAG  I  ++ G  H+ A ++ 
Sbjct: 154 SLALTNSGELFSWGANGYGQLGLGTTGEKVVTPTLVKSLAGIPIAFIACGGNHSFAVSKS 213

Query: 191 GKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEK 250
           G +FGWG +  G++G          L+  + R                Q+L +       
Sbjct: 214 GAIFGWGKNTFGQLG----------LNDLVSRCF-------------PQQLKT------- 243

Query: 251 YMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGR 298
                     +  + V  I+CG D S  L + G + +CG+  +GQLG 
Sbjct: 244 ----------LRNLGVRYISCGDDFSAFLTQEGGVFTCGAGTFGQLGH 281



 Score = 82.4 bits (202), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 73/287 (25%), Positives = 121/287 (42%), Gaps = 57/287 (19%)

Query: 28  AVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVP-----GLPSDVTSVSAGHYHSLAVTNN 82
           AV  +G+   G LGL       GG   E   +P        S V   + G  H+L +T +
Sbjct: 2   AVYCWGNTVHGELGL-------GGIEDEQVLLPREMDWCHSSSVQQAACGTSHTLLLTKD 54

Query: 83  GAVWAWGRNNEVQLGR--GALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSL 140
           G +++ G N+  QLG     L ++     P+ +  L+   V         S A+ + G +
Sbjct: 55  GKLFSCGNNDHGQLGHDTDCLPNKR----PQFISSLENYIVTHVSCGTTHSLALTNWGQV 110

Query: 141 WVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSA 200
           + WG +  GQLG   D+     P  ++ +A + +V+++ G  H+LA T  G+LF WG + 
Sbjct: 111 FSWGSNSIGQLGHDTDLQTYTTPRMIKTIATKTVVQIASGQFHSLALTNSGELFSWGANG 170

Query: 201 DGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFL 260
            G++G LG                              +K+V+  + K            
Sbjct: 171 YGQLG-LGTT---------------------------GEKVVTPTLVKS----------- 191

Query: 261 VEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFP 307
           + G+ +  IACG +HS  + ++G +   G N +GQLG        FP
Sbjct: 192 LAGIPIAFIACGGNHSFAVSKSGAIFGWGKNTFGQLGLNDLVSRCFP 238



 Score = 64.7 bits (156), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 57/190 (30%), Positives = 90/190 (47%), Gaps = 15/190 (7%)

Query: 2   RLLKSVVHNHVNVLTSRIFMRSASGTA--VVSFGDGSQGALGLPTSLTGVGGDAYEPTRV 59
           R++K++    V  + S  F   A   +  + S+G    G LGL T+    G     PT V
Sbjct: 134 RMIKTIATKTVVQIASGQFHSLALTNSGELFSWGANGYGQLGLGTT----GEKVVTPTLV 189

Query: 60  P---GLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGL 116
               G+P  +  ++ G  HS AV+ +GA++ WG+N   QLG   L SR     P++++ L
Sbjct: 190 KSLAGIP--IAFIACGGNHSFAVSKSGAIFGWGKNTFGQLGLNDLVSRCF---PQQLKTL 244

Query: 117 DQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVK 176
             + V         S+ +  +G ++  G    GQLG G   +  I+P  V  L G KI +
Sbjct: 245 RNLGVRYISCGDDFSAFLTQEGGVFTCGAGTFGQLGHGT-CSNEILPRMVFELMGSKITQ 303

Query: 177 VSFGWGHALA 186
           ++ G  H LA
Sbjct: 304 IACGRRHTLA 313



 Score = 45.4 bits (106), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 33/91 (36%), Positives = 46/91 (50%), Gaps = 14/91 (15%)

Query: 270 ACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDM-GMFPVDI----NFHPVSISSGLGHS 324
           ACG  H+L+L ++G L SCG+N +GQLG +   +    P  I    N+    +S G  HS
Sbjct: 42  ACGTSHTLLLTKDGKLFSCGNNDHGQLGHDTDCLPNKRPQFISSLENYIVTHVSCGTTHS 101

Query: 325 LAICEVRSSNVTGGARGIVSWGWNRSSQLGR 355
           LA+        T   + + SWG N   QLG 
Sbjct: 102 LAL--------TNWGQ-VFSWGSNSIGQLGH 123


>gi|340505900|gb|EGR32173.1| regulator of chromosome condensation, putative [Ichthyophthirius
           multifiliis]
          Length = 427

 Score = 94.4 bits (233), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 83/275 (30%), Positives = 124/275 (45%), Gaps = 38/275 (13%)

Query: 84  AVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVW 143
            V+AWG  N  QLG   L +      P+ VE L   N+    A+  VS A+  DG ++ W
Sbjct: 44  TVYAWGYGNFGQLG---LANENNQYSPQEVEKLSDRNIIKVKANKSVSMALSQDGKVYTW 100

Query: 144 GKSKRGQLGLGKDIT--EAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSAD 201
           GK+K G LG   DIT    I P  VE L   +I ++S G  H  A ++DG+L+ WG    
Sbjct: 101 GKNKGGILG-HYDITSFNMIQPELVEKLENIQIKQISCGPFHMAAISQDGELYTWGNKDH 159

Query: 202 GRIGNLGKALESSPLDSNIDRSSES-DQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFL 260
           G+   LG  ++       I R +++ D    S    K Q L                   
Sbjct: 160 GK---LGHEIQQKSNKVEIKRGNQNYDYAEGSMLPTKVQSL------------------- 197

Query: 261 VEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFHPVSISSG 320
             G++   ++CG   ++VL  NG + S G+++ GQLG + ++ G      NF P  I   
Sbjct: 198 -NGIKCKQVSCGGQFTVVLTENGEVYSFGNSMKGQLGYQSEETG------NFQPKKIPD- 249

Query: 321 LGHSLAI-CEVRSSNVTGGARGIVSWGWNRSSQLG 354
           L + + I C  + S     +  + +WG N   QLG
Sbjct: 250 LQNIINIDCGQQFSAAVSSSGKVYTWGNNDHGQLG 284



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 67/243 (27%), Positives = 114/243 (46%), Gaps = 27/243 (11%)

Query: 56  PTRVPGLPS-DVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWN-DPKRV 113
           PT+V  L       VS G   ++ +T NG V+++G + + QLG    +S  T N  PK++
Sbjct: 191 PTKVQSLNGIKCKQVSCGGQFTVVLTENGEVYSFGNSMKGQLG---YQSEETGNFQPKKI 247

Query: 114 EGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEK 173
             L   N+         S+A+   G ++ WG +  GQLG  + I +A  P++V    G K
Sbjct: 248 PDLQ--NIINIDCGQQFSAAVSSSGKVYTWGNNDHGQLGNNQSIYQA-RPNQVTGFGGNK 304

Query: 174 IVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRS---------- 223
           I+ +S G     A + +GKLF WGY  DG++G+  +    +P                  
Sbjct: 305 IINISCGDNFIAALSNEGKLFTWGYGNDGQLGHSNRNDLYAPKQIEFKEKIIKVDCGGTH 364

Query: 224 ----SESDQEISSSTIEKAQKLVSEGMEKE---KYMPIIWEPFLVEGVEVVDIACGFDHS 276
               ++++Q        + Q  + E +E E   +  P I E F  + ++VVD+ CG +++
Sbjct: 365 TAFLTQNNQLYLFGRGNEGQLGIGENIESEAAIRTTPKIVEFF--KKMKVVDVTCGGEYT 422

Query: 277 LVL 279
           L +
Sbjct: 423 LAI 425



 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 83/347 (23%), Positives = 137/347 (39%), Gaps = 37/347 (10%)

Query: 14  VLTSRIFMRSASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPS-DVTSVSAG 72
                IF  +     V ++G G+ G LGL         + Y P  V  L   ++  V A 
Sbjct: 30  FFAQSIFTDTPPQKTVYAWGYGNFGQLGLANE-----NNQYSPQEVEKLSDRNIIKVKAN 84

Query: 73  HYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSS 132
              S+A++ +G V+ WG+N    LG   + S      P+ VE L+ + +          +
Sbjct: 85  KSVSMALSQDGKVYTWGKNKGGILGHYDITSFNMI-QPELVEKLENIQIKQISCGPFHMA 143

Query: 133 AIGDDGSLWVWGKSKRGQLG----------------LGKDITE-AIVPSRVEALAGEKIV 175
           AI  DG L+ WG    G+LG                   D  E +++P++V++L G K  
Sbjct: 144 AISQDGELYTWGNKDHGKLGHEIQQKSNKVEIKRGNQNYDYAEGSMLPTKVQSLNGIKCK 203

Query: 176 KVSFGWGHALAQTEDGKLFGWGYSADGRIGNLG--------KALESSPLDSNIDRSSESD 227
           +VS G    +  TE+G+++ +G S  G++G           K +       NID   +  
Sbjct: 204 QVSCGGQFTVVLTENGEVYSFGNSMKGQLGYQSEETGNFQPKKIPDLQNIINIDCGQQFS 263

Query: 228 QEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGV---EVVDIACGFDHSLVLGRNGV 284
             +SSS           G            P  V G    ++++I+CG +    L   G 
Sbjct: 264 AAVSSSGKVYTWGNNDHGQLGNNQSIYQARPNQVTGFGGNKIINISCGDNFIAALSNEGK 323

Query: 285 LLSCGSNVYGQLGREKQDMGMFPVDINFHP--VSISSGLGHSLAICE 329
           L + G    GQLG   ++    P  I F    + +  G  H+  + +
Sbjct: 324 LFTWGYGNDGQLGHSNRNDLYAPKQIEFKEKIIKVDCGGTHTAFLTQ 370



 Score = 65.9 bits (159), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 69/312 (22%), Positives = 132/312 (42%), Gaps = 41/312 (13%)

Query: 55  EPTRVPGLPS-DVTSVSAGHYHSLAVTNNGAVWAWG-------------RNNEVQLGRGA 100
           +P  V  L +  +  +S G +H  A++ +G ++ WG             ++N+V++ RG 
Sbjct: 120 QPELVEKLENIQIKQISCGPFHMAAISQDGELYTWGNKDHGKLGHEIQQKSNKVEIKRGN 179

Query: 101 LESRATWND--PKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDIT 158
                      P +V+ L+ +        G  +  + ++G ++ +G S +GQLG   + T
Sbjct: 180 QNYDYAEGSMLPTKVQSLNGIKCKQVSCGGQFTVVLTENGEVYSFGNSMKGQLGYQSEET 239

Query: 159 EAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLD- 217
               P ++  L  + I+ +  G   + A +  GK++ WG +  G++GN     ++ P   
Sbjct: 240 GNFQPKKIPDL--QNIINIDCGQQFSAAVSSSGKVYTWGNNDHGQLGNNQSIYQARPNQV 297

Query: 218 -----SNIDRSSESDQEISSSTIEKAQKLVS-----EGMEKEKYMPIIWEPFLVEGVE-V 266
                + I   S  D  I++ + E   KL +     +G         ++ P  +E  E +
Sbjct: 298 TGFGGNKIINISCGDNFIAALSNEG--KLFTWGYGNDGQLGHSNRNDLYAPKQIEFKEKI 355

Query: 267 VDIACGFDHSLVLGRNGVLLSCGSNVYGQLG-----REKQDMGMFPVDINFHP----VSI 317
           + + CG  H+  L +N  L   G    GQLG       +  +   P  + F      V +
Sbjct: 356 IKVDCGGTHTAFLTQNNQLYLFGRGNEGQLGIGENIESEAAIRTTPKIVEFFKKMKVVDV 415

Query: 318 SSGLGHSLAICE 329
           + G  ++LAI E
Sbjct: 416 TCGGEYTLAITE 427


>gi|350994396|ref|NP_001017352.2| regulator of chromosome condensation (RCC1) and BTB (POZ) domain
           containing protein 1 [Xenopus (Silurana) tropicalis]
 gi|89272755|emb|CAJ83624.1| regulator of chromosome condensation (RCC1) and BTB (POZ) domain
           containing protein 1 [Xenopus (Silurana) tropicalis]
          Length = 599

 Score = 94.4 bits (233), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 61/191 (31%), Positives = 104/191 (54%), Gaps = 12/191 (6%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPG--LPSDVTSVSAGHYHSLAVTNNGAVW 86
           V S+G      LG   ++ GV      P +V    L   V  V+ G +HS+A+T++G V+
Sbjct: 165 VYSWGHNGYSQLGNGNAIQGVA-----PVQVCMELLAKKVIQVACGSHHSMALTSDGEVF 219

Query: 87  AWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSS-AIGDDGSLWVWGK 145
            WG NN  Q+G G   +++    P+RV    Q  V  + A+G  SS A+ D+G ++ WG 
Sbjct: 220 CWGYNNCGQVGSGTTANQSV---PRRVSATLQSKVVVSIAAGQSSSMAVTDNGHVYCWGY 276

Query: 146 SKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIG 205
           +  GQLG+G +    ++P R+       I++V  G+ H LA ++ G L+ WG ++ G++G
Sbjct: 277 NGTGQLGIG-NTGNQLMPCRLVFAHPVCIIQVVLGYAHTLALSDQGVLYAWGANSHGQLG 335

Query: 206 NLGKALESSPL 216
              K+ +++P+
Sbjct: 336 IGNKSNQTAPV 346



 Score = 78.6 bits (192), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 75/295 (25%), Positives = 129/295 (43%), Gaps = 28/295 (9%)

Query: 76  SLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVC-AAFASGVVSSAI 134
           ++  T N  V+ +G N+   LG G  +S      P+R++ L    +   ++ SG      
Sbjct: 103 AIYTTQNNEVFVFGMNSSNCLGTGDNQSTII---PRRLDVLCGKRIVDLSYGSGPHILVC 159

Query: 135 GDDGSLWVWGKSKRGQLGLGKDITEAIVPSRV-EALAGEKIVKVSFGWGHALAQTEDGKL 193
            +DG ++ WG +   QLG G  I + + P +V   L  +K+++V+ G  H++A T DG++
Sbjct: 160 NEDGEVYSWGHNGYSQLGNGNAI-QGVAPVQVCMELLAKKVIQVACGSHHSMALTSDGEV 218

Query: 194 FGWGYSADGRIGNLGKALESSP------LDSNIDRSSESDQEISSSTIEKAQKL------ 241
           F WGY+  G++G+   A +S P      L S +  S  + Q  S +  +           
Sbjct: 219 FCWGYNNCGQVGSGTTANQSVPRRVSATLQSKVVVSIAAGQSSSMAVTDNGHVYCWGYNG 278

Query: 242 ---VSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGR 298
              +  G    + MP          V ++ +  G+ H+L L   GVL + G+N +GQLG 
Sbjct: 279 TGQLGIGNTGNQLMPC--RLVFAHPVCIIQVVLGYAHTLALSDQGVLYAWGANSHGQLGI 336

Query: 299 EKQDMGMFPVDINFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQL 353
             +     PV +  +   +     HS  I   +S      +  +  WG  R   L
Sbjct: 337 GNKSNQTAPVKVGTNERMVEVTACHSTNISAAKSQ-----SGQVYMWGLCRGQSL 386


>gi|405950964|gb|EKC18916.1| RCC1 and BTB domain-containing protein 1 [Crassostrea gigas]
          Length = 531

 Score = 94.4 bits (233), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 59/180 (32%), Positives = 103/180 (57%), Gaps = 7/180 (3%)

Query: 66  VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAF 125
           +  V+ G +HS+A++  G ++AWG+NN  Q+G G+  ++ T   P++V  +    +  + 
Sbjct: 130 ILRVACGSHHSMALSQEGEIFAWGQNNCGQVGSGSTTNQPT---PRKVVAVIGNKMALSI 186

Query: 126 ASGVVSS-AIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHA 184
           A G  SS A+ ++G ++ WG +  GQLGLG ++ +   P RV+ L G  I ++  G+ H 
Sbjct: 187 ACGQTSSMALLENGEVYGWGYNGNGQLGLGNNVNQP-NPCRVQQLQGVIISQLVCGYAHT 245

Query: 185 LAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSE 244
           LA +++G LF WG ++ G++G   KA + SP  S +  + E   EI++S        +SE
Sbjct: 246 LALSDEGSLFSWGANSYGQLGTGNKANQVSP--SKVPMNGERMVEIAASHYAHISAAMSE 303



 Score = 84.7 bits (208), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 75/273 (27%), Positives = 123/273 (45%), Gaps = 53/273 (19%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGL-PSDVTSVSAGH-YHSLAVTNNGAVW 86
           V + G      LGL     G    ++EP +V  L    +  ++ G   H LAV+ NG ++
Sbjct: 43  VYAIGSNCSSCLGL-----GDAHSSFEPRKVDVLCKKKIVDIAFGSGPHVLAVSKNGEMY 97

Query: 87  AWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSS-AIGDDGSLWVWGK 145
           +WG N   QLG G      T   P  +    Q       A G   S A+  +G ++ WG+
Sbjct: 98  SWGHNGYCQLGNGGSGQGLT---PTLINTNLQGKKILRVACGSHHSMALSQEGEIFAWGQ 154

Query: 146 SKRGQLGLGKDITEAIVPSRVEALAGEKI-VKVSFGWGHALAQTEDGKLFGWGYSADGRI 204
           +  GQ+G G   T    P +V A+ G K+ + ++ G   ++A  E+G+++GWGY+ +G++
Sbjct: 155 NNCGQVGSG-STTNQPTPRKVVAVIGNKMALSIACGQTSSMALLENGEVYGWGYNGNGQL 213

Query: 205 GNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGV 264
           G          L +N+++ +            + Q+L                    +GV
Sbjct: 214 G----------LGNNVNQPNPC----------RVQQL--------------------QGV 233

Query: 265 EVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLG 297
            +  + CG+ H+L L   G L S G+N YGQLG
Sbjct: 234 IISQLVCGYAHTLALSDEGSLFSWGANSYGQLG 266



 Score = 65.1 bits (157), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 67/262 (25%), Positives = 117/262 (44%), Gaps = 65/262 (24%)

Query: 121 VCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFG 180
           +C   +SG  +  I +D  ++  G +    LGLG D   +  P +V+ L  +KIV ++FG
Sbjct: 24  ICVFGSSGNEAIYITNDDEVYAIGSNCSSCLGLG-DAHSSFEPRKVDVLCKKKIVDIAFG 82

Query: 181 WG-HALAQTEDGKLFGWGYSADGRIGN--LGKALESSPLDSNIDRSSESDQEISSSTIEK 237
            G H LA +++G+++ WG++   ++GN   G+ L  + +++N+                 
Sbjct: 83  SGPHVLAVSKNGEMYSWGHNGYCQLGNGGSGQGLTPTLINTNL----------------- 125

Query: 238 AQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLG 297
                                   +G +++ +ACG  HS+ L + G + + G N  GQ+G
Sbjct: 126 ------------------------QGKKILRVACGSHHSMALSQEGEIFAWGQNNCGQVG 161

Query: 298 REKQDMGMFPVDI-----NFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQ 352
                    P  +     N   +SI+ G   S+A+ E       G   G   WG+N + Q
Sbjct: 162 SGSTTNQPTPRKVVAVIGNKMALSIACGQTSSMALLE------NGEVYG---WGYNGNGQ 212

Query: 353 LGRMGPDNV----PLVVEGLEG 370
           LG +G +NV    P  V+ L+G
Sbjct: 213 LG-LG-NNVNQPNPCRVQQLQG 232


>gi|340501848|gb|EGR28585.1| regulator of chromosome condensation, putative [Ichthyophthirius
           multifiliis]
          Length = 612

 Score = 94.4 bits (233), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 81/316 (25%), Positives = 146/316 (46%), Gaps = 62/316 (19%)

Query: 29  VVSFGDGSQGALGL----PTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGA 84
           V+ +GD S   LGL    P S+       Y P ++P +  ++ +VS G  H+LA+ N   
Sbjct: 195 VLVWGDNSSSQLGLGINSPNSI-------YYPVQIPNI-QNIINVSCGSEHTLALDNRNQ 246

Query: 85  VWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWG 144
           V++WG      LG    E +A+   PK ++    + V      G+ S A+   G ++ WG
Sbjct: 247 VYSWGNGEGGLLGHSNEEIQAS---PKIIDKFQDLQVEFIICGGLHSLALTKKGHVYSWG 303

Query: 145 KSKRGQLGLGKDITE-----AIVPSRVE-ALAGEKIVKVSFGWGHALAQTEDGKLFGWGY 198
           +++ GQLGL +D+ +       +P ++   L G  + +++ G  H+LA  ++G++FGWGY
Sbjct: 304 RNEGGQLGLNQDVLKDNLYFCCLPEKICGQLEGVFVKQIAAGDAHSLALAQNGQVFGWGY 363

Query: 199 SADGRIG-----------------NLGK---------------ALESSPLD-SNIDRSSE 225
           + +G++G                 NL K                +E  P+   N    S 
Sbjct: 364 NINGQLGLGQQQSDKQVSEPKQIKNLQKIEKVFCCGLNDQNQLGIEKLPIKIQNTHNQSI 423

Query: 226 SDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVL----GR 281
            +Q I  + I++ +   +       Y+P   + F    + V+ ++CG +HSL       +
Sbjct: 424 LNQNI--NIIDQYKANDNSKNNNNIYIPKRMDCFY--QMPVLHLSCGHNHSLAFVLADTK 479

Query: 282 NGVLLSCGSNVYGQLG 297
           + ++ + G N +GQLG
Sbjct: 480 HYMVFAWGMNKHGQLG 495



 Score = 68.6 bits (166), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 68/248 (27%), Positives = 108/248 (43%), Gaps = 33/248 (13%)

Query: 83  GAVWAWGRNNEVQLGR-------GALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIG 135
           G +++WG+N E Q+G             +   N PK V  L    +         S AI 
Sbjct: 131 GVLYSWGQNTEGQMGNVYDPKTNNPKHRKIKINFPKLVYPLKDSIIIQVSCGYQHSVAIT 190

Query: 136 DDGSLWVWGKSKRGQLGLGKDITEAI-VPSRVEALAGEKIVKVSFGWGHALAQTEDGKLF 194
            +G++ VWG +   QLGLG +   +I  P ++  +  + I+ VS G  H LA     +++
Sbjct: 191 FNGNVLVWGDNSSSQLGLGINSPNSIYYPVQIPNI--QNIINVSCGSEHTLALDNRNQVY 248

Query: 195 GWGYSADGRIGNLGKALESSPLDSNIDRSSESDQE------ISSSTIEKAQKLVSEG--- 245
            WG    G +G+  + +++SP    ID+  +   E      + S  + K   + S G   
Sbjct: 249 SWGNGEGGLLGHSNEEIQASP--KIIDKFQDLQVEFIICGGLHSLALTKKGHVYSWGRNE 306

Query: 246 ----------MEKEKYMPIIWEPFL--VEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVY 293
                     ++   Y   + E     +EGV V  IA G  HSL L +NG +   G N+ 
Sbjct: 307 GGQLGLNQDVLKDNLYFCCLPEKICGQLEGVFVKQIAAGDAHSLALAQNGQVFGWGYNIN 366

Query: 294 GQLGREKQ 301
           GQLG  +Q
Sbjct: 367 GQLGLGQQ 374


>gi|395815365|ref|XP_003781199.1| PREDICTED: secretion-regulating guanine nucleotide exchange factor
           [Otolemur garnettii]
          Length = 875

 Score = 94.0 bits (232), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 96/320 (30%), Positives = 143/320 (44%), Gaps = 43/320 (13%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAW 88
           V+S G  S G LG+P            P  +  L   V  ++AG  H+LA T +G V+ W
Sbjct: 539 VLSCGSNSFGQLGVPHG----PRRCVVPQAIELLREKVVCIAAGLRHALAATVSGIVFQW 594

Query: 89  GR---NNEVQLGRG-ALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWG 144
           G    ++  +L  G AL    T  +P RV GL+        A    S+++ D G ++VWG
Sbjct: 595 GTGLASSGRRLCPGNALPLFLTAKEPSRVTGLENCKAVCVVAGSDHSASLTDAGEVYVWG 654

Query: 145 KSKRGQLGLGKDITEAIVPSRVEA--LAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADG 202
            +K GQL          VP ++EA     EK+  V  GW H +AQTE GK+F WG  AD 
Sbjct: 655 SNKHGQLATQAAFLP--VPQKIEAHCFQNEKVTAVWSGWTHLVAQTETGKMFTWG-RAD- 710

Query: 203 RIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVE 262
             G LG+ LES           + +++ SS    + Q  +   +              + 
Sbjct: 711 -YGQLGRTLESH-------EGWKLEKQDSSLPCSRPQNSMPSSLH------------CLS 750

Query: 263 GVEVVDIACGFDHSL-VLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFHPVSIS--- 318
           G    +++CG +H+L V+G  G   S G N +G  G   +D    P  +     S++   
Sbjct: 751 G--ATEVSCGSEHNLAVIG--GTCYSWGWNEHGMCGDGTEDNIWAPKPVQSLWSSLALLV 806

Query: 319 -SGLGHSLAICEVRSSNVTG 337
             G GHSLA+C + +    G
Sbjct: 807 GCGAGHSLALCHLPACPAPG 826



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 100/383 (26%), Positives = 154/383 (40%), Gaps = 69/383 (18%)

Query: 33  GDGSQGALGLPTSLTGVGGDAYEPTRVPGL--PSDVTSVSAGHYHSLAVTNNGAVWAWGR 90
           G  S G LGL     G   D   P ++     P  V  ++ G  HS  VT+ G ++  G 
Sbjct: 438 GANSYGQLGL-----GHKEDVLLPQQLNDFCKPRCVRRITGGGGHSAIVTDGGGLFVCGL 492

Query: 91  NNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQ 150
           N + QLG G  +    +   K + G     V   +   ++   + ++G +   G +  GQ
Sbjct: 493 NKDGQLGLGHTDDVLYFTPCKSLLGCAIQQVACGWDFTII---LTENGQVLSCGSNSFGQ 549

Query: 151 LGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGW--GYSADGRIGNLG 208
           LG+       +VP  +E L  EK+V ++ G  HALA T  G +F W  G ++ GR    G
Sbjct: 550 LGVPHGPRRCVVPQAIELLR-EKVVCIAAGLRHALAATVSGIVFQWGTGLASSGRRLCPG 608

Query: 209 KALESSPLDSNIDRSS-----ESDQEIS-------SSTIEKAQKLVSEGMEKE------- 249
            AL   PL       S     E+ + +        S+++  A ++   G  K        
Sbjct: 609 NAL---PLFLTAKEPSRVTGLENCKAVCVVAGSDHSASLTDAGEVYVWGSNKHGQLATQA 665

Query: 250 KYMPIIW--EPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGR--------- 298
            ++P+    E    +  +V  +  G+ H +     G + + G   YGQLGR         
Sbjct: 666 AFLPVPQKIEAHCFQNEKVTAVWSGWTHLVAQTETGKMFTWGRADYGQLGRTLESHEGWK 725

Query: 299 -EKQDMGM------FPVDINFHPVS----ISSGLGHSLAICEVRSSNVTGGARGIVSWGW 347
            EKQD  +        +  + H +S    +S G  H+LA        V GG     SWGW
Sbjct: 726 LEKQDSSLPCSRPQNSMPSSLHCLSGATEVSCGSEHNLA--------VIGGT--CYSWGW 775

Query: 348 NRSSQLGRMGPDNV--PLVVEGL 368
           N     G    DN+  P  V+ L
Sbjct: 776 NEHGMCGDGTEDNIWAPKPVQSL 798



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 61/234 (26%), Positives = 98/234 (41%), Gaps = 60/234 (25%)

Query: 144 GKSKRGQLGLGKDITEAIVPSRVEALAGEKIVK-VSFGWGHALAQTEDGKLFGWGYSADG 202
           G +  GQLGLG    + ++P ++      + V+ ++ G GH+   T+ G LF  G + DG
Sbjct: 438 GANSYGQLGLGHK-EDVLLPQQLNDFCKPRCVRRITGGGGHSAIVTDGGGLFVCGLNKDG 496

Query: 203 RIG--NLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFL 260
           ++G  +    L  +P  S +                                        
Sbjct: 497 QLGLGHTDDVLYFTPCKSLL---------------------------------------- 516

Query: 261 VEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREK-QDMGMFPVDINF---HPVS 316
             G  +  +ACG+D +++L  NG +LSCGSN +GQLG        + P  I       V 
Sbjct: 517 --GCAIQQVACGWDFTIILTENGQVLSCGSNSFGQLGVPHGPRRCVVPQAIELLREKVVC 574

Query: 317 ISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPDN-VPLVVEGLE 369
           I++GL H+LA      + V+G    +  WG   +S   R+ P N +PL +   E
Sbjct: 575 IAAGLRHALA------ATVSG---IVFQWGTGLASSGRRLCPGNALPLFLTAKE 619



 Score = 51.6 bits (122), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 92/360 (25%), Positives = 144/360 (40%), Gaps = 56/360 (15%)

Query: 31  SFGDGSQGALGLPTSLTGVGGDAYEP-TRVPGLPSDVTSVSAGH---YHSLAVTNNGAVW 86
           SF D  +       ++    G  Y P TR   +  D  S+++      H L V ++    
Sbjct: 378 SFEDAKEKMREFTKTMKRPFGVKYNPYTRSIQILKDTKSITSAMDELRHDLDVISDA--L 435

Query: 87  AWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAI-GDDGSLWVWGK 145
           A G N+  QLG G  E       P+++    +         G   SAI  D G L+V G 
Sbjct: 436 AKGANSYGQLGLGHKEDVLL---PQQLNDFCKPRCVRRITGGGGHSAIVTDGGGLFVCGL 492

Query: 146 SKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIG 205
           +K GQLGLG    + +  +  ++L G  I +V+ GW   +  TE+G++   G ++ G++G
Sbjct: 493 NKDGQLGLGH-TDDVLYFTPCKSLLGCAIQQVACGWDFTIILTENGQVLSCGSNSFGQLG 551

Query: 206 NLGKALESSPLDSNIDRSSESDQE----------------ISSSTIEKAQKLVSEG--ME 247
                +   P    + ++ E  +E                +S    +    L S G  + 
Sbjct: 552 -----VPHGPRRCVVPQAIELLREKVVCIAAGLRHALAATVSGIVFQWGTGLASSGRRLC 606

Query: 248 KEKYMPIIW---EPFLVEGVEVVDIAC---GFDHSLVLGRNGVLLSCGSNVYGQLGREKQ 301
               +P+     EP  V G+E     C   G DHS  L   G +   GSN +GQL  +  
Sbjct: 607 PGNALPLFLTAKEPSRVTGLENCKAVCVVAGSDHSASLTDAGEVYVWGSNKHGQLATQAA 666

Query: 302 DMGMFPVDINFHP------VSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGR 355
            + + P  I  H        ++ SG  H +A  E      TG    + +WG     QLGR
Sbjct: 667 FLPV-PQKIEAHCFQNEKVTAVWSGWTHLVAQTE------TG---KMFTWGRADYGQLGR 716


>gi|418744828|ref|ZP_13301174.1| chromosome condensation regulator RCC1 repeat protein [Leptospira
           santarosai str. CBC379]
 gi|418755747|ref|ZP_13311943.1| chromosome condensation regulator RCC1 repeat protein [Leptospira
           santarosai str. MOR084]
 gi|409963952|gb|EKO31852.1| chromosome condensation regulator RCC1 repeat protein [Leptospira
           santarosai str. MOR084]
 gi|410794314|gb|EKR92223.1| chromosome condensation regulator RCC1 repeat protein [Leptospira
           santarosai str. CBC379]
          Length = 506

 Score = 94.0 bits (232), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 87/300 (29%), Positives = 145/300 (48%), Gaps = 24/300 (8%)

Query: 21  MRSASGTAVVSFGDGSQGALGLPTSLTGV---GGDAYEPTRVPGLPSDVTSVSAGHYHSL 77
           M  A   +V ++G+ ++G LG+  +        GD   PT VPG+  D    + G  H+L
Sbjct: 193 MAIAKNGSVYTWGNNAKGQLGIGNNNNPNPKEAGDRLPPTLVPGI-DDAVMGAYGFNHAL 251

Query: 78  AVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDD 137
            + ++G + ++G+NN  QLG G +   A       V  ++  +V    A    S+A+ ++
Sbjct: 252 ILKSDGTLVSFGQNNVGQLGNGEVNLDANSFSTNPVAVVNLRDVIQVIAGSEHSAALTEN 311

Query: 138 GSLWVWGKSKRGQLGLGKDITEAIV---PSRVEALAGEKIVKVSFGWGHALAQTEDGKLF 194
           G ++VWGK++ G LG G+      V   P +VE L+G  I +++ G  H LA   DGK++
Sbjct: 312 GEVYVWGKNQYGNLGNGRLSAANTVQSTPVKVEGLSG--IKQIANGRDHILALASDGKIY 369

Query: 195 GWGYSADGRIGNLGKALES-SPLDSNI----DRSSESDQEISSSTIEKAQKLVSEGME-- 247
            WG +A G++G  G    + +P+ + +    + SS       S +I K+ ++   G    
Sbjct: 370 SWGLNASGQLGIGGSGFPNPTPIPTQVLNITNASSVWAGGTQSFSILKSGEVKGWGANGN 429

Query: 248 ------KEKYMPIIWEPF-LVEGVE-VVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGRE 299
                  E     ++EP   V G+E V+   CG  H+  L  NG +   G N  G LGR+
Sbjct: 430 TANLAIGETNTSKVYEPNKAVVGIENVIHFGCGATHNFALLGNGEIYGWGWNFKGSLGRQ 489



 Score = 71.2 bits (173), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 85/315 (26%), Positives = 132/315 (41%), Gaps = 59/315 (18%)

Query: 67  TSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQV-NVCAAF 125
           T +SAG  HS     NG V+  GRNN  QLG G        N+   +  LD + ++ +  
Sbjct: 131 TKLSAGAAHS-GFLKNGNVYTVGRNNFGQLGTGHSTGD---NNNDVIVLLDSIRDIFSIH 186

Query: 126 ASGVVSSAIGDDGSLWVWGKSKRGQLGLG-------KDITEAIVPSRVEALAGEKIVKVS 178
            +   S AI  +GS++ WG + +GQLG+G       K+  + + P+ V  +  +  V  +
Sbjct: 187 FNQNNSMAIAKNGSVYTWGNNAKGQLGIGNNNNPNPKEAGDRLPPTLVPGI--DDAVMGA 244

Query: 179 FGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKA 238
           +G+ HAL    DG L  +G +  G++GN          + N+D +S S   ++       
Sbjct: 245 YGFNHALILKSDGTLVSFGQNNVGQLGN---------GEVNLDANSFSTNPVA------- 288

Query: 239 QKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGR 298
                                +V   +V+ +  G +HS  L  NG +   G N YG LG 
Sbjct: 289 ---------------------VVNLRDVIQVIAGSEHSAALTENGEVYVWGKNQYGNLGN 327

Query: 299 EKQDMGMFPVDINFHPVSISSGLGHSLAICEVRSSNVTGGARG-IVSWGWNRSSQLGRMG 357
            +         +   PV +  GL     I   R   +   + G I SWG N S QLG  G
Sbjct: 328 GRLSAAN---TVQSTPVKV-EGLSGIKQIANGRDHILALASDGKIYSWGLNASGQLGIGG 383

Query: 358 ---PDNVPLVVEGLE 369
              P+  P+  + L 
Sbjct: 384 SGFPNPTPIPTQVLN 398


>gi|148666329|gb|EDK98745.1| hect domain and RLD 3, isoform CRA_a [Mus musculus]
          Length = 913

 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 68/252 (26%), Positives = 117/252 (46%), Gaps = 29/252 (11%)

Query: 66  VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAF 125
           +  V+ G  HSLA+++ G +++WG  ++ QLG    E       P+ ++ L+Q  +    
Sbjct: 86  IIHVACGESHSLALSDRGQLFSWGAGSDGQLGLMTTEDSVAV--PRLIQKLNQQTILQVS 143

Query: 126 ASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHAL 185
                  A+  DG  + WGK+  GQLGLGK+      P RV +L G  + +V+ G  H+ 
Sbjct: 144 CGNWHCLALAADGQFFTWGKNSHGQLGLGKEFPSQTSPQRVRSLEGIPLAQVAAGGAHSF 203

Query: 186 AQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSE----SDQEISSSTIEKA--- 238
           A +  G +FGWG +  G++G   +    SP    + R+ +    S  E  ++ + K+   
Sbjct: 204 ALSLSGAVFGWGMNNAGQLGLSDEKDRESPCHVKLLRTQKVVYISCGEEHTAVLTKSGGV 263

Query: 239 ------------QKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVL-GRNGVL 285
                          V++ +   + + ++       G EV  IACG  H+L L   +G++
Sbjct: 264 FTFGAGSCGQLGHDSVNDEVNPRRVLELM-------GSEVTQIACGRQHTLALVPSSGLI 316

Query: 286 LSCGSNVYGQLG 297
            + G    GQLG
Sbjct: 317 YAFGCGAKGQLG 328



 Score = 80.5 bits (197), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 80/280 (28%), Positives = 127/280 (45%), Gaps = 29/280 (10%)

Query: 39  ALGLPTSLTGVGGDAYEPTRVPGLPSD--VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQL 96
           +LG P   + + G   EP +V    SD  +  V+ G  HS+ +  +G V+  G N + QL
Sbjct: 8   SLGQPGISSNLQGIVAEP-QVCRFVSDRSIKEVACGGNHSVFLLEDGEVYTCGVNTKGQL 66

Query: 97  GRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKD 156
           G          N P+++  L   ++         S A+ D G L+ WG    GQLGL   
Sbjct: 67  GH-----EREGNKPEQIGALADQHIIHVACGESHSLALSDRGQLFSWGAGSDGQLGLMTT 121

Query: 157 ITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPL 216
                VP  ++ L  + I++VS G  H LA   DG+ F WG ++ G++G LGK   S   
Sbjct: 122 EDSVAVPRLIQKLNQQTILQVSCGNWHCLALAADGQFFTWGKNSHGQLG-LGKEFPSQTS 180

Query: 217 DSNIDRSSE-------SDQEISSSTIEKAQKLVSEGM----------EKEKYMPIIWEPF 259
              + RS E       +     S  +  +  +   GM          EK++  P   +  
Sbjct: 181 PQRV-RSLEGIPLAQVAAGGAHSFALSLSGAVFGWGMNNAGQLGLSDEKDRESPCHVK-- 237

Query: 260 LVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGRE 299
           L+   +VV I+CG +H+ VL ++G + + G+   GQLG +
Sbjct: 238 LLRTQKVVYISCGEEHTAVLTKSGGVFTFGAGSCGQLGHD 277


>gi|301755906|ref|XP_002913789.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC4-like isoform
           2 [Ailuropoda melanoleuca]
          Length = 1049

 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 65/245 (26%), Positives = 114/245 (46%), Gaps = 43/245 (17%)

Query: 55  EPTRVPGLPS-DVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRV 113
           +P +V  L + ++ +VS G  H+LA+ + G V+AWG +++ QLG   L S      P+ +
Sbjct: 74  KPEQVVALDAQNIVAVSCGEAHTLALNDKGQVYAWGLDSDGQLG--LLGSEECIRVPRNI 131

Query: 114 EGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEK 173
           + L  + +         S A+     ++ WG++K GQLGLG D  +   P  +++L G  
Sbjct: 132 KSLSDIQIVQVACGYYHSLALSKASEVFCWGQNKYGQLGLGIDCKKQASPQLIKSLLGIP 191

Query: 174 IVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSS 233
            ++V+ G  H+   T  G +FGWG +  G++G          L+                
Sbjct: 192 FMQVAAGGAHSFVLTLSGAIFGWGRNKFGQLG----------LND--------------- 226

Query: 234 TIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVY 293
                        E ++Y+P + +    +  ++V I CG DH+  L + G + + G+  Y
Sbjct: 227 -------------ENDRYVPNLLKSLRTQ--KIVYICCGEDHTAALTKEGGVFTFGAGGY 271

Query: 294 GQLGR 298
           GQLG 
Sbjct: 272 GQLGH 276



 Score = 78.6 bits (192), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 60/192 (31%), Positives = 99/192 (51%), Gaps = 16/192 (8%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVP-GLPS----DVTSVSAGHYHSLAVTNNG 83
           V ++G  S G LGL      +G +  E  RVP  + S     +  V+ G+YHSLA++   
Sbjct: 105 VYAWGLDSDGQLGL------LGSE--ECIRVPRNIKSLSDIQIVQVACGYYHSLALSKAS 156

Query: 84  AVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVW 143
            V+ WG+N   QLG G    +     P+ ++ L  +      A G  S  +   G+++ W
Sbjct: 157 EVFCWGQNKYGQLGLGIDCKKQA--SPQLIKSLLGIPFMQVAAGGAHSFVLTLSGAIFGW 214

Query: 144 GKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGR 203
           G++K GQLGL  D  +  VP+ +++L  +KIV +  G  H  A T++G +F +G    G+
Sbjct: 215 GRNKFGQLGLN-DENDRYVPNLLKSLRTQKIVYICCGEDHTAALTKEGGVFTFGAGGYGQ 273

Query: 204 IGNLGKALESSP 215
           +G+   + E +P
Sbjct: 274 LGHNSTSHEINP 285



 Score = 71.6 bits (174), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 68/275 (24%), Positives = 112/275 (40%), Gaps = 57/275 (20%)

Query: 85  VWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWG 144
           +  WG  +  QLG G ++      +P++ +      V         +  + DDG+++  G
Sbjct: 1   MLCWGNASFGQLGLGGIDEEIVL-EPRKSDFFINKKVRDVGCGLRHTVFVLDDGTVYTCG 59

Query: 145 KSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRI 204
            +  GQLG  K   +   P +V AL  + IV VS G  H LA  + G+++ WG  +DG++
Sbjct: 60  CNDLGQLGHEKSRKK---PEQVVALDAQNIVAVSCGEAHTLALNDKGQVYAWGLDSDGQL 116

Query: 205 GNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGV 264
           G LG   E   +  NI   S+                                      +
Sbjct: 117 GLLGSE-ECIRVPRNIKSLSD--------------------------------------I 137

Query: 265 EVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLG-----REKQDMGMFPVDINFHPVSISS 319
           ++V +ACG+ HSL L +   +   G N YGQLG     +++    +    +    + +++
Sbjct: 138 QIVQVACGYYHSLALSKASEVFCWGQNKYGQLGLGIDCKKQASPQLIKSLLGIPFMQVAA 197

Query: 320 GLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLG 354
           G  HS  +          GA  I  WG N+  QLG
Sbjct: 198 GGAHSFVL-------TLSGA--IFGWGRNKFGQLG 223


>gi|149033226|gb|EDL88027.1| hect domain and RLD 3 (predicted), isoform CRA_b [Rattus
           norvegicus]
          Length = 909

 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 68/252 (26%), Positives = 117/252 (46%), Gaps = 29/252 (11%)

Query: 66  VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAF 125
           +  V+ G  HSLA+++ G +++WG  ++ QLG    E       P+ ++ L+Q  +    
Sbjct: 86  IIHVACGESHSLALSDRGQLFSWGAGSDGQLGLMTTEDSVAV--PRLIQKLNQQTILQVS 143

Query: 126 ASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHAL 185
                  A+  DG  + WGK+  GQLGLGK+      P RV +L G  + +V+ G  H+ 
Sbjct: 144 CGNWHCLALAADGQFFTWGKNSHGQLGLGKEFPSQTSPQRVRSLEGIPLAQVAAGGAHSF 203

Query: 186 AQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSE----SDQEISSSTIEKA--- 238
           A +  G +FGWG +  G++G   +    SP    + R+ +    S  E  ++ + K+   
Sbjct: 204 ALSLSGAVFGWGMNNAGQLGLSDEKDRESPCHVKLLRTQKVVYISCGEEHTAVLTKSGGV 263

Query: 239 ------------QKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVL-GRNGVL 285
                          V++ +   + + ++       G EV  IACG  H+L L   +G++
Sbjct: 264 FTFGAGSCGQLGHDSVNDEVNPRRVLELM-------GSEVTQIACGRQHTLALVPSSGLI 316

Query: 286 LSCGSNVYGQLG 297
            + G    GQLG
Sbjct: 317 YAFGCGAKGQLG 328



 Score = 80.5 bits (197), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 86/312 (27%), Positives = 138/312 (44%), Gaps = 33/312 (10%)

Query: 39  ALGLPTSLTGVGGDAYEPTRVPGLPSD--VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQL 96
           +LG P   + + G   EP +V    SD  +  V+ G  HS+ +  +G V+  G N + QL
Sbjct: 8   SLGQPGISSNLQGIVAEP-QVCRFVSDRSIKEVACGGNHSVFLLEDGEVYTCGVNTKGQL 66

Query: 97  GRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKD 156
           G          N P+++  L   ++         S A+ D G L+ WG    GQLGL   
Sbjct: 67  GH-----EREGNKPEQIGALADQHIIHVACGESHSLALSDRGQLFSWGAGSDGQLGLMTT 121

Query: 157 ITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPL 216
                VP  ++ L  + I++VS G  H LA   DG+ F WG ++ G++G LGK   S   
Sbjct: 122 EDSVAVPRLIQKLNQQTILQVSCGNWHCLALAADGQFFTWGKNSHGQLG-LGKEFPSQTS 180

Query: 217 DSNIDRSSESDQEIS-------SSTIEKAQKLVSEGM----------EKEKYMPIIWEPF 259
              + RS E             S  +  +  +   GM          EK++  P   +  
Sbjct: 181 PQRV-RSLEGIPLAQVAAGGAHSFALSLSGAVFGWGMNNAGQLGLSDEKDRESPCHVK-- 237

Query: 260 LVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDI----NFHPV 315
           L+   +VV I+CG +H+ VL ++G + + G+   GQLG +  +  + P  +         
Sbjct: 238 LLRTQKVVYISCGEEHTAVLTKSGGVFTFGAGSCGQLGHDSVNDEVNPRRVLELMGSEVT 297

Query: 316 SISSGLGHSLAI 327
            I+ G  H+LA+
Sbjct: 298 QIACGRQHTLAL 309


>gi|301755904|ref|XP_002913788.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC4-like isoform
           1 [Ailuropoda melanoleuca]
 gi|281346973|gb|EFB22557.1| hypothetical protein PANDA_001627 [Ailuropoda melanoleuca]
          Length = 1057

 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 65/245 (26%), Positives = 114/245 (46%), Gaps = 43/245 (17%)

Query: 55  EPTRVPGLPS-DVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRV 113
           +P +V  L + ++ +VS G  H+LA+ + G V+AWG +++ QLG   L S      P+ +
Sbjct: 74  KPEQVVALDAQNIVAVSCGEAHTLALNDKGQVYAWGLDSDGQLG--LLGSEECIRVPRNI 131

Query: 114 EGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEK 173
           + L  + +         S A+     ++ WG++K GQLGLG D  +   P  +++L G  
Sbjct: 132 KSLSDIQIVQVACGYYHSLALSKASEVFCWGQNKYGQLGLGIDCKKQASPQLIKSLLGIP 191

Query: 174 IVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSS 233
            ++V+ G  H+   T  G +FGWG +  G++G          L+                
Sbjct: 192 FMQVAAGGAHSFVLTLSGAIFGWGRNKFGQLG----------LND--------------- 226

Query: 234 TIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVY 293
                        E ++Y+P + +    +  ++V I CG DH+  L + G + + G+  Y
Sbjct: 227 -------------ENDRYVPNLLKSLRTQ--KIVYICCGEDHTAALTKEGGVFTFGAGGY 271

Query: 294 GQLGR 298
           GQLG 
Sbjct: 272 GQLGH 276



 Score = 78.6 bits (192), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 60/192 (31%), Positives = 99/192 (51%), Gaps = 16/192 (8%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVP-GLPS----DVTSVSAGHYHSLAVTNNG 83
           V ++G  S G LGL      +G +  E  RVP  + S     +  V+ G+YHSLA++   
Sbjct: 105 VYAWGLDSDGQLGL------LGSE--ECIRVPRNIKSLSDIQIVQVACGYYHSLALSKAS 156

Query: 84  AVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVW 143
            V+ WG+N   QLG G    +     P+ ++ L  +      A G  S  +   G+++ W
Sbjct: 157 EVFCWGQNKYGQLGLGIDCKKQA--SPQLIKSLLGIPFMQVAAGGAHSFVLTLSGAIFGW 214

Query: 144 GKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGR 203
           G++K GQLGL  D  +  VP+ +++L  +KIV +  G  H  A T++G +F +G    G+
Sbjct: 215 GRNKFGQLGLN-DENDRYVPNLLKSLRTQKIVYICCGEDHTAALTKEGGVFTFGAGGYGQ 273

Query: 204 IGNLGKALESSP 215
           +G+   + E +P
Sbjct: 274 LGHNSTSHEINP 285



 Score = 71.2 bits (173), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 68/275 (24%), Positives = 112/275 (40%), Gaps = 57/275 (20%)

Query: 85  VWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWG 144
           +  WG  +  QLG G ++      +P++ +      V         +  + DDG+++  G
Sbjct: 1   MLCWGNASFGQLGLGGIDEEIVL-EPRKSDFFINKKVRDVGCGLRHTVFVLDDGTVYTCG 59

Query: 145 KSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRI 204
            +  GQLG  K   +   P +V AL  + IV VS G  H LA  + G+++ WG  +DG++
Sbjct: 60  CNDLGQLGHEKSRKK---PEQVVALDAQNIVAVSCGEAHTLALNDKGQVYAWGLDSDGQL 116

Query: 205 GNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGV 264
           G LG   E   +  NI   S+                                      +
Sbjct: 117 GLLGSE-ECIRVPRNIKSLSD--------------------------------------I 137

Query: 265 EVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLG-----REKQDMGMFPVDINFHPVSISS 319
           ++V +ACG+ HSL L +   +   G N YGQLG     +++    +    +    + +++
Sbjct: 138 QIVQVACGYYHSLALSKASEVFCWGQNKYGQLGLGIDCKKQASPQLIKSLLGIPFMQVAA 197

Query: 320 GLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLG 354
           G  HS  +          GA  I  WG N+  QLG
Sbjct: 198 GGAHSFVL-------TLSGA--IFGWGRNKFGQLG 223


>gi|148753311|gb|AAI42947.1| RCC2 protein [Homo sapiens]
          Length = 457

 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 81/293 (27%), Positives = 130/293 (44%), Gaps = 35/293 (11%)

Query: 75  HSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAI 134
           HSL +T  G +W+WGRN + QLG G  +       P+ +EGL    + +A      + A+
Sbjct: 96  HSLLITTEGKLWSWGRNEKGQLGHGDTKRVEA---PRLIEGLSHEVIVSAACGRNHTLAL 152

Query: 135 GDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLF 194
            + GS++ +G++K GQLGLG        P+++    G+ I K++ G   ++     G L+
Sbjct: 153 TETGSVFAFGENKMGQLGLGNQTDAVPSPAQI-MYNGQPITKMACGAEFSMIMDCKGNLY 211

Query: 195 GWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPI 254
            +G    G++G+            N D    +  +      E   + V+  +EK K   I
Sbjct: 212 SFGCPEYGQLGH------------NSDGKFIARAQRIEYDCELVPRRVAIFIEKTKDGQI 259

Query: 255 IWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFHP 314
           +  P +V    V D+ACG +H+LVL     + S G   YG+LG  +Q   M P  +    
Sbjct: 260 LPVPNVV----VRDVACGANHTLVLDSQKRVFSWGFGGYGRLGHAEQKDEMVPRLVKLFD 315

Query: 315 V------SISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPDNV 361
                   I +G   S A+ EV          G+  WG   +S+   M P  V
Sbjct: 316 FPGRGASRIYAGYTCSFAVSEV---------GGLFFWGATNTSRESTMYPKAV 359



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 56/186 (30%), Positives = 80/186 (43%), Gaps = 31/186 (16%)

Query: 56  PTRVPGLPSDV-TSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVE 114
           P  + GL  +V  S + G  H+LA+T  G+V+A+G N   QLG G      T   P   +
Sbjct: 128 PRLIEGLSHEVIVSAACGRNHTLALTETGSVFAFGENKMGQLGLG----NQTDAVPSPAQ 183

Query: 115 GLDQVNVCAAFASGVVSSAIGD-DGSLWVWGKSKRGQLGL---GKDITEA--------IV 162
            +         A G   S I D  G+L+ +G  + GQLG    GK I  A        +V
Sbjct: 184 IMYNGQPITKMACGAEFSMIMDCKGNLYSFGCPEYGQLGHNSDGKFIARAQRIEYDCELV 243

Query: 163 PSRVEALAGEK-------------IVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGK 209
           P RV A+  EK             +  V+ G  H L      ++F WG+   GR+G+  +
Sbjct: 244 PRRV-AIFIEKTKDGQILPVPNVVVRDVACGANHTLVLDSQKRVFSWGFGGYGRLGHAEQ 302

Query: 210 ALESSP 215
             E  P
Sbjct: 303 KDEMVP 308


>gi|426255642|ref|XP_004021457.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC4 isoform 3
           [Ovis aries]
          Length = 979

 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 77/316 (24%), Positives = 137/316 (43%), Gaps = 49/316 (15%)

Query: 55  EPTRVPGLPS-DVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRV 113
           +P +V  L + ++ +VS G  H+LA+ + G V+AWG +++ QLG   L S      P+ +
Sbjct: 74  KPEQVVALDAQNIVAVSCGEAHTLALNDKGQVYAWGLDSDGQLG--LLGSEECIRVPRNI 131

Query: 114 EGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEK 173
           + L  + +         S A+     ++ WG++K GQLGLG D  +   P  +++L G  
Sbjct: 132 KSLSDIQIVQVACGYYHSLALSKASEVFCWGQNKYGQLGLGIDCKKQASPQLIKSLLGIP 191

Query: 174 IVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSS 233
            ++++ G  H+   T  G +FGWG +  G++G          L+                
Sbjct: 192 FMQIAAGGAHSFVLTLSGAIFGWGRNKFGQLG----------LND--------------- 226

Query: 234 TIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVY 293
                        E ++Y+P + +    +  ++V I CG DH+  L + G + + G+  Y
Sbjct: 227 -------------ENDRYVPNLLKSLRTQ--KIVYICCGEDHTAALTKEGGVFTFGAGGY 271

Query: 294 GQLGREKQDMGMFPVDINFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQL 353
           GQLG       + P  +      +   +   +A     +S     +  I S+G   + QL
Sbjct: 272 GQLGHNSTSHEINPRKV----FELMGSIVTQIACGRQHTSAFVPSSGRIYSFGLGGNGQL 327

Query: 354 GRMGPDN--VPLVVEG 367
           G     N   P  V+G
Sbjct: 328 GTGSTSNRKSPFTVKG 343



 Score = 78.2 bits (191), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 60/192 (31%), Positives = 99/192 (51%), Gaps = 16/192 (8%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVP-GLPS----DVTSVSAGHYHSLAVTNNG 83
           V ++G  S G LGL      +G +  E  RVP  + S     +  V+ G+YHSLA++   
Sbjct: 105 VYAWGLDSDGQLGL------LGSE--ECIRVPRNIKSLSDIQIVQVACGYYHSLALSKAS 156

Query: 84  AVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVW 143
            V+ WG+N   QLG G    +     P+ ++ L  +      A G  S  +   G+++ W
Sbjct: 157 EVFCWGQNKYGQLGLGIDCKKQA--SPQLIKSLLGIPFMQIAAGGAHSFVLTLSGAIFGW 214

Query: 144 GKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGR 203
           G++K GQLGL  D  +  VP+ +++L  +KIV +  G  H  A T++G +F +G    G+
Sbjct: 215 GRNKFGQLGLN-DENDRYVPNLLKSLRTQKIVYICCGEDHTAALTKEGGVFTFGAGGYGQ 273

Query: 204 IGNLGKALESSP 215
           +G+   + E +P
Sbjct: 274 LGHNSTSHEINP 285



 Score = 72.0 bits (175), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 69/273 (25%), Positives = 111/273 (40%), Gaps = 57/273 (20%)

Query: 87  AWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKS 146
            WG  +  QLG G ++      +P++ +      V         +  + DDG+++  G +
Sbjct: 3   CWGNASFGQLGLGGIDEEIVL-EPRKSDFFVNKKVRDVGCGLRHTVFVLDDGTVYTCGCN 61

Query: 147 KRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGN 206
             GQLG  K   +   P +V AL  + IV VS G  H LA  + G+++ WG  +DG++G 
Sbjct: 62  DLGQLGHEKSRKK---PEQVVALDAQNIVAVSCGEAHTLALNDKGQVYAWGLDSDGQLGL 118

Query: 207 LGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEV 266
           LG   E   +  NI   S+                                      +++
Sbjct: 119 LGSE-ECIRVPRNIKSLSD--------------------------------------IQI 139

Query: 267 VDIACGFDHSLVLGRNGVLLSCGSNVYGQLG-----REKQDMGMFPVDINFHPVSISSGL 321
           V +ACG+ HSL L +   +   G N YGQLG     +++    +    +    + I++G 
Sbjct: 140 VQVACGYYHSLALSKASEVFCWGQNKYGQLGLGIDCKKQASPQLIKSLLGIPFMQIAAGG 199

Query: 322 GHSLAICEVRSSNVTGGARGIVSWGWNRSSQLG 354
            HS  +          GA  I  WG N+  QLG
Sbjct: 200 AHSFVL-------TLSGA--IFGWGRNKFGQLG 223


>gi|332030031|gb|EGI69856.1| X-linked retinitis pigmentosa GTPase regulator-like protein
            [Acromyrmex echinatior]
          Length = 2956

 Score = 94.0 bits (232), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 66/186 (35%), Positives = 100/186 (53%), Gaps = 7/186 (3%)

Query: 29   VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAW 88
            + ++G   QG LG  +S+   G   +       +  +V SVS GH H+LAVTNNG ++AW
Sbjct: 1911 IYTWGSSVQGCLGTGSSVLRYG-TPHAICFFKSMKIEVFSVSCGHCHTLAVTNNG-IYAW 1968

Query: 89   GRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKR 148
            G +   QLG G +   ++   P+ V  L Q  +  A A    S A+  DG ++ WG    
Sbjct: 1969 GASQFGQLGLGKVLQCSS---PELVTSLAQEIIVDAVAGQYHSVALTADGRIFTWGWGVH 2025

Query: 149  GQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLG 208
            GQLG G +  E  +PS V+AL G  +  +S G+ H LA + DG L+ +G +  G++G  G
Sbjct: 2026 GQLGHG-NTDEKAIPSLVKALLGIVVCCISAGYAHTLALSIDGVLYAFGCNILGQLGT-G 2083

Query: 209  KALESS 214
              ++SS
Sbjct: 2084 DNIKSS 2089



 Score = 90.1 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 74/276 (26%), Positives = 123/276 (44%), Gaps = 49/276 (17%)

Query: 68   SVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLD--QVNVCAAF 125
            S+S G  H +A+  NG ++ WG + +  LG G+  S   +  P  +      ++ V +  
Sbjct: 1895 SLSTGFSH-VALVRNGNIYTWGSSVQGCLGTGS--SVLRYGTPHAICFFKSMKIEVFSVS 1951

Query: 126  ASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHAL 185
                 + A+ ++G ++ WG S+ GQLGLGK + +   P  V +LA E IV    G  H++
Sbjct: 1952 CGHCHTLAVTNNG-IYAWGASQFGQLGLGK-VLQCSSPELVTSLAQEIIVDAVAGQYHSV 2009

Query: 186  AQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEG 245
            A T DG++F WG+   G++G+                                      G
Sbjct: 2010 ALTADGRIFTWGWGVHGQLGH--------------------------------------G 2031

Query: 246  MEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGM 305
               EK +P + +  L  G+ V  I+ G+ H+L L  +GVL + G N+ GQLG        
Sbjct: 2032 NTDEKAIPSLVKALL--GIVVCCISAGYAHTLALSIDGVLYAFGCNILGQLGTGDNIKSS 2089

Query: 306  FPVDINF--HPVSISSGLGHSLAICEVRSSNVTGGA 339
             P+ ++       IS+G  H+LA+       + G +
Sbjct: 2090 VPIKVSLPDRITLISTGYFHNLAVSNTNKLYIWGAS 2125



 Score = 82.4 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 86/342 (25%), Positives = 145/342 (42%), Gaps = 60/342 (17%)

Query: 23   SASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDV-TSVSAGHYHSLAVTN 81
            + +   + ++G    G LGL   L         P  V  L  ++     AG YHS+A+T 
Sbjct: 1959 AVTNNGIYAWGASQFGQLGLGKVL-----QCSSPELVTSLAQEIIVDAVAGQYHSVALTA 2013

Query: 82   NGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLW 141
            +G ++ WG     QLG G  + +A    P  V+ L  + VC   A    + A+  DG L+
Sbjct: 2014 DGRIFTWGWGVHGQLGHGNTDEKAI---PSLVKALLGIVVCCISAGYAHTLALSIDGVLY 2070

Query: 142  VWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSA- 200
             +G +  GQLG G +I  + VP +V     ++I  +S G+ H LA +   KL+ WG S  
Sbjct: 2071 AFGCNILGQLGTGDNIKSS-VPIKVS--LPDRITLISTGYFHNLAVSNTNKLYIWGASPQ 2127

Query: 201  ---------------------DGRIGNLGKALESSPLD-SNI-----------DRSSESD 227
                                 + R   LG+ LE  P D +N+           D      
Sbjct: 2128 VLRLQAQAQKKIRISEQQDANEKRNKALGE-LEKIPSDATNLNGKIKEFLNKKDGVQTKS 2186

Query: 228  QEISSSTIEKAQKLVSEGM-----------EKEKYM-PIIWEPFLVEGVEVVDIACGFDH 275
                +S IE  +K  ++             E + ++ P I +  LV+G ++  I+ G  H
Sbjct: 2187 SHTETSDIETQKKFETKNAHLKDFNFDLIEESQTHLKPCIVDTSLVKG-QINQISVGCHH 2245

Query: 276  SLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFHPVSI 317
            + ++ ++G L + G N+ GQ+G   +   + P  + ++   I
Sbjct: 2246 NALITKDGSLYTWGRNLDGQIGNGTRREVLIPTPLYYNSACI 2287



 Score = 40.8 bits (94), Expect = 1.2,   Method: Composition-based stats.
 Identities = 34/113 (30%), Positives = 52/113 (46%), Gaps = 16/113 (14%)

Query: 264  VEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFHP----VSISS 319
            +EV  ++CG  H+L +  NG+  + G++ +GQLG  K      P  +        V   +
Sbjct: 1945 IEVFSVSCGHCHTLAVTNNGI-YAWGASQFGQLGLGKVLQCSSPELVTSLAQEIIVDAVA 2003

Query: 320  GLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPDN--VPLVVEGLEG 370
            G  HS+A+        T   R I +WGW    QLG    D   +P +V+ L G
Sbjct: 2004 GQYHSVAL--------TADGR-IFTWGWGVHGQLGHGNTDEKAIPSLVKALLG 2047


>gi|405965978|gb|EKC31310.1| Putative E3 ubiquitin-protein ligase HERC2 [Crassostrea gigas]
          Length = 5345

 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 94/325 (28%), Positives = 156/325 (48%), Gaps = 42/325 (12%)

Query: 29   VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDV---TSVSAGHYHSLAVTNNGAV 85
            V + G+ + G LGL  +     G    P ++  L   V    +V +G  HSLA+T +G V
Sbjct: 3518 VYACGEATNGRLGLGITT----GTVSVPRQITSLSQYVIKKVAVHSGGRHSLALTTDGKV 3573

Query: 86   WAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGK 145
            ++WG  ++ +LG     SR   + P+ +E L    V         S+AI  +G L+ WG 
Sbjct: 3574 FSWGEGDDGKLGHF---SRWNCDKPRLIEALKSKRVRDIACGSSHSAAITSNGDLYTWGL 3630

Query: 146  SKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGW--GHALAQTEDGKLFGWGYSADGR 203
             + G+LG G + T+ + P +V+ALA E++V+V+ G      LA T++GK++ WG   DG 
Sbjct: 3631 GEYGRLGHGDNTTQ-LKPKQVKALAHERVVQVACGSRDAQTLALTDEGKVYSWG---DGD 3686

Query: 204  IGNLGKA-LESSPLDSNIDRSSESDQEIS--------SSTIEKAQKLVSEGMEKEKYMPI 254
             G LG+   E   +   +DR    DQ++         S  + K+ ++ + G  K  Y  +
Sbjct: 3687 FGKLGRGGSEGCNVPHEVDRLR--DQKVCQIECGAQFSLALTKSGQVWTWG--KGDYFRL 3742

Query: 255  -------IWEPFLVEGVE---VVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMG 304
                   + +P +VEG++   +V +A G  H L +  +G + + G N +GQ G     + 
Sbjct: 3743 GHGTDAHVRKPQIVEGLKGKKIVHVAVGALHCLAVTDSGQVFAWGDNDHGQQGNGTTTVN 3802

Query: 305  MFPVDINFHPVSISS---GLGHSLA 326
              P  +      IS    G  HS+A
Sbjct: 3803 RKPALVVLEGYKISKVACGSSHSIA 3827



 Score = 87.8 bits (216), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 49/136 (36%), Positives = 80/136 (58%), Gaps = 4/136 (2%)

Query: 71  AGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVV 130
           +G   +LAVT++GAV++WG  +  +LGRG  +   T   PK +E L   +V   +     
Sbjct: 732 SGDAQTLAVTDSGAVYSWGDGDYGKLGRGGNDGCKT---PKVIEKLMGQDVVRVYCGNQF 788

Query: 131 SSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTED 190
           S A+   G+++ WGK    +LG G +   A  P ++EAL+ +K+  ++ G  H +A TED
Sbjct: 789 SMALTKSGAVYTWGKGDNYRLGHGTE-DHARHPKQIEALSSKKVKDIAIGSLHCMAITED 847

Query: 191 GKLFGWGYSADGRIGN 206
           G+L+GWG +  G++GN
Sbjct: 848 GELYGWGRNEQGQLGN 863



 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 67/202 (33%), Positives = 92/202 (45%), Gaps = 18/202 (8%)

Query: 23   SASGTAVVSFGD------GSQGALGLPTSLTGVGGDAYEPTRVPGLPSD-VTSVSAGHY- 74
            S+   A+ S GD      G  G LG      G      +P +V  L  + V  V+ G   
Sbjct: 3613 SSHSAAITSNGDLYTWGLGEYGRLG-----HGDNTTQLKPKQVKALAHERVVQVACGSRD 3667

Query: 75   -HSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSA 133
              +LA+T+ G V++WG  +  +LGRG  E     N P  V+ L    VC        S A
Sbjct: 3668 AQTLALTDEGKVYSWGDGDFGKLGRGGSEG---CNVPHEVDRLRDQKVCQIECGAQFSLA 3724

Query: 134  IGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKL 193
            +   G +W WGK    +LG G D      P  VE L G+KIV V+ G  H LA T+ G++
Sbjct: 3725 LTKSGQVWTWGKGDYFRLGHGTD-AHVRKPQIVEGLKGKKIVHVAVGALHCLAVTDSGQV 3783

Query: 194  FGWGYSADGRIGNLGKALESSP 215
            F WG +  G+ GN    +   P
Sbjct: 3784 FAWGDNDHGQQGNGTTTVNRKP 3805



 Score = 82.0 bits (201), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 93/374 (24%), Positives = 152/374 (40%), Gaps = 73/374 (19%)

Query: 4    LKSVVHNHVNVLT-----SRIFMRSASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTR 58
            L+S+ H  +  L            SA G  V S+G+G  G LG      G       P  
Sbjct: 4540 LESIQHVFIKKLAVNSGGKHCLALSAEG-EVYSWGEGEDGKLG-----HGNRSPCDRPRV 4593

Query: 59   VPGLP-SDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLD 117
            +  L   +V  ++AG  HS  +T NG ++ WG+    +LG G  E +     PK VE L 
Sbjct: 4594 IDSLRGKEVVDIAAGGAHSACITANGELYTWGKGRYGRLGHGDSEDQPR---PKLVEALK 4650

Query: 118  QVNVC-AAFASGVVSS-AIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIV 175
               V   A  SG   +  I DD ++W WG    G+LG G       VP ++E L G+ ++
Sbjct: 4651 SYRVVDMACGSGDAQTLCITDDDNVWSWGDGDYGKLGRGGS-DGCKVPMKIETLQGQGVM 4709

Query: 176  KVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTI 235
            KV  G   ++A T+ G ++ WG     R+G+                        S   +
Sbjct: 4710 KVECGSQFSVALTKSGSVYTWGKGDYHRLGH-----------------------GSDDHV 4746

Query: 236  EKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQ 295
             + +K+ +                 ++  +V+D+ACG  H +     G + S G N  GQ
Sbjct: 4747 RRPRKVSA-----------------LQNKKVIDVACGSLHCVACTDTGEVFSWGDNDEGQ 4789

Query: 296  LGREKQDMGMFPVDINFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGR 355
            LG    +           P  ++S LG  +       + V  G+   ++W  N++   G+
Sbjct: 4790 LGDGTTNAIQ-------RPRLVASLLGKKI-------NRVACGSAHSLAWSTNKAVSAGK 4835

Query: 356  MGPDNVPLVVEGLE 369
            + P ++P+    L+
Sbjct: 4836 L-PSDIPMEYNHLQ 4848



 Score = 72.8 bits (177), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 76/302 (25%), Positives = 125/302 (41%), Gaps = 53/302 (17%)

Query: 75  HSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAI 134
           H + +T++G V++WG  +  +LG G  ++     +P  + GL    V         S A+
Sbjct: 630 HYMGLTSDGEVFSWGNGDGGKLGHGDYQNH---EEPALITGLSGKQVAKICCGSSYSVAL 686

Query: 135 GDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHA--LAQTEDGK 192
             +G ++ WGK   G+LG G    +   P  ++   G +IV V+ G G A  LA T+ G 
Sbjct: 687 TSNGEVYSWGKGNFGRLGHGSS-EDQTTPMLLKFFKGHRIVDVACGSGDAQTLAVTDSGA 745

Query: 193 LFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYM 252
           ++ WG   DG  G LG+                +D   +   IEK               
Sbjct: 746 VYSWG---DGDYGKLGRG--------------GNDGCKTPKVIEK--------------- 773

Query: 253 PIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINF 312
                   + G +VV + CG   S+ L ++G + + G     +LG   +D    P  I  
Sbjct: 774 --------LMGQDVVRVYCGNQFSMALTKSGAVYTWGKGDNYRLGHGTEDHARHPKQIE- 824

Query: 313 HPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPDNV--PLVVEGLEG 370
              ++SS     +AI  +    +T     +  WG N   QLG     N   P ++ G+EG
Sbjct: 825 ---ALSSKKVKDIAIGSLHCMAITEDGE-LYGWGRNEQGQLGNPSISNFTEPTLIGGMEG 880

Query: 371 ES 372
           ++
Sbjct: 881 KN 882



 Score = 70.5 bits (171), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 79/301 (26%), Positives = 120/301 (39%), Gaps = 70/301 (23%)

Query: 85   VWAWGRNNEVQLG--RGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWV 142
            V+ WG N++ QLG  +G+     T ND   +  L  V +     S      +  +G ++ 
Sbjct: 3466 VFCWGLNDKDQLGGPKGSKIKLPTLND--NLSALRCVQIVGGSKSLF---CVTQEGKVYA 3520

Query: 143  WGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWG--HALAQTEDGKLFGWGYSA 200
             G++  G+LGLG       VP ++ +L+   I KV+   G  H+LA T DGK+F WG   
Sbjct: 3521 CGEATNGRLGLGITTGTVSVPRQITSLSQYVIKKVAVHSGGRHSLALTTDGKVFSWGEGD 3580

Query: 201  DGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFL 260
            DG++G+  +         N D+                                   P L
Sbjct: 3581 DGKLGHFSRW--------NCDK-----------------------------------PRL 3597

Query: 261  VEGVE---VVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFHPVSI 317
            +E ++   V DIACG  HS  +  NG L + G   YG+LG       + P  +       
Sbjct: 3598 IEALKSKRVRDIACGSSHSAAITSNGDLYTWGLGEYGRLGHGDNTTQLKPKQVK------ 3651

Query: 318  SSGLGHSLAI---CEVRSSNVTGGAR--GIVSWGWNRSSQLGRMGPD--NVPLVVEGLEG 370
               L H   +   C  R +          + SWG     +LGR G +  NVP  V+ L  
Sbjct: 3652 --ALAHERVVQVACGSRDAQTLALTDEGKVYSWGDGDFGKLGRGGSEGCNVPHEVDRLRD 3709

Query: 371  E 371
            +
Sbjct: 3710 Q 3710



 Score = 58.5 bits (140), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 78/266 (29%), Positives = 112/266 (42%), Gaps = 46/266 (17%)

Query: 135  GDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLF 194
            G  G +W WG + RGQLG G D  +   P   EALA  + +++  G     A T +GK+F
Sbjct: 4458 GGSGQIWGWGHNHRGQLG-GVDGAKVKQPVSCEALAVTRPIQLVGGEQTLFAVTAEGKVF 4516

Query: 195  GWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTI---EKAQKLVSEGMEKEKY 251
              GY A GR+G  G    S P         ES Q +    +      +  ++   E E Y
Sbjct: 4517 ATGYGAGGRLGVGGTESVSHPT------QLESIQHVFIKKLAVNSGGKHCLALSAEGEVY 4570

Query: 252  MPIIW-----------------EPFLVE---GVEVVDIACGFDHSLVLGRNGVLLSCGSN 291
                W                  P +++   G EVVDIA G  HS  +  NG L + G  
Sbjct: 4571 S---WGEGEDGKLGHGNRSPCDRPRVIDSLRGKEVVDIAAGGAHSACITANGELYTWGKG 4627

Query: 292  VYGQLGREKQDMGMFPVDI----NFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGW 347
             YG+LG    +    P  +    ++  V ++ G G +  +C     NV        SWG 
Sbjct: 4628 RYGRLGHGDSEDQPRPKLVEALKSYRVVDMACGSGDAQTLCITDDDNVW-------SWGD 4680

Query: 348  NRSSQLGRMGPD--NVPLVVEGLEGE 371
                +LGR G D   VP+ +E L+G+
Sbjct: 4681 GDYGKLGRGGSDGCKVPMKIETLQGQ 4706



 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 78/338 (23%), Positives = 134/338 (39%), Gaps = 67/338 (19%)

Query: 49   VGGDAYEPTRVPGLPSDVTSVSA-----GHYHSLAVTNNGAVWAWGRNNEVQLGRGALES 103
            +GG      ++P L  +++++       G      VT  G V+A G     +LG G   +
Sbjct: 3477 LGGPKGSKIKLPTLNDNLSALRCVQIVGGSKSLFCVTQEGKVYACGEATNGRLGLGI--T 3534

Query: 104  RATWNDPKRVEGLDQ--VNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAI 161
              T + P+++  L Q  +   A  + G  S A+  DG ++ WG+   G+LG         
Sbjct: 3535 TGTVSVPRQITSLSQYVIKKVAVHSGGRHSLALTTDGKVFSWGEGDDGKLGHFSRWN-CD 3593

Query: 162  VPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNID 221
             P  +EAL  +++  ++ G  H+ A T +G L+ WG    GR+G+     +  P      
Sbjct: 3594 KPRLIEALKSKRVRDIACGSSHSAAITSNGDLYTWGLGEYGRLGHGDNTTQLKP------ 3647

Query: 222  RSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFD--HSLVL 279
                          ++ + L  E                     VV +ACG     +L L
Sbjct: 3648 --------------KQVKALAHE--------------------RVVQVACGSRDAQTLAL 3673

Query: 280  GRNGVLLSCGSNVYGQLGREKQDMGMFPVDINF----HPVSISSGLGHSLAICEVRSSNV 335
               G + S G   +G+LGR   +    P +++         I  G   SLA+ +      
Sbjct: 3674 TDEGKVYSWGDGDFGKLGRGGSEGCNVPHEVDRLRDQKVCQIECGAQFSLALTK------ 3727

Query: 336  TGGARGIVSWGWNRSSQLGRMGPDNV--PLVVEGLEGE 371
               +  + +WG     +LG     +V  P +VEGL+G+
Sbjct: 3728 ---SGQVWTWGKGDYFRLGHGTDAHVRKPQIVEGLKGK 3762



 Score = 52.8 bits (125), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 77/304 (25%), Positives = 123/304 (40%), Gaps = 61/304 (20%)

Query: 77   LAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNV--CAAFASGVVSSAI 134
             AVT  G V+A G     +LG G  ES +    P ++E +  V +   A  + G    A+
Sbjct: 4507 FAVTAEGKVFATGYGAGGRLGVGGTESVS---HPTQLESIQHVFIKKLAVNSGGKHCLAL 4563

Query: 135  GDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLF 194
              +G ++ WG+ + G+LG G + +    P  +++L G+++V ++ G  H+   T +G+L+
Sbjct: 4564 SAEGEVYSWGEGEDGKLGHG-NRSPCDRPRVIDSLRGKEVVDIAAGGAHSACITANGELY 4622

Query: 195  GWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPI 254
             WG    GR G LG                  DQ                          
Sbjct: 4623 TWG---KGRYGRLGHG-------------DSEDQP------------------------- 4641

Query: 255  IWEPFLVEGVE---VVDIACGF--DHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVD 309
               P LVE ++   VVD+ACG     +L +  +  + S G   YG+LGR   D    P+ 
Sbjct: 4642 --RPKLVEALKSYRVVDMACGSGDAQTLCITDDDNVWSWGDGDYGKLGRGGSDGCKVPMK 4699

Query: 310  INFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPDNV--PLVVEG 367
            I         G G     C  + S     +  + +WG     +LG    D+V  P  V  
Sbjct: 4700 IE-----TLQGQGVMKVECGSQFSVALTKSGSVYTWGKGDYHRLGHGSDDHVRRPRKVSA 4754

Query: 368  LEGE 371
            L+ +
Sbjct: 4755 LQNK 4758



 Score = 44.7 bits (104), Expect = 0.083,   Method: Compositional matrix adjust.
 Identities = 27/95 (28%), Positives = 48/95 (50%), Gaps = 9/95 (9%)

Query: 28  AVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSD-VTSVSAGHYHSLAVTNNGAVW 86
           AV ++G G    LG      G    A  P ++  L S  V  ++ G  H +A+T +G ++
Sbjct: 797 AVYTWGKGDNYRLG-----HGTEDHARHPKQIEALSSKKVKDIAIGSLHCMAITEDGELY 851

Query: 87  AWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNV 121
            WGRN + QLG  ++   + + +P  + G++  N+
Sbjct: 852 GWGRNEQGQLGNPSI---SNFTEPTLIGGMEGKNI 883


>gi|332801056|ref|NP_001095381.2| protein RCC2 [Bos taurus]
 gi|151554348|gb|AAI47876.1| RCC2 protein [Bos taurus]
          Length = 520

 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 82/293 (27%), Positives = 130/293 (44%), Gaps = 35/293 (11%)

Query: 75  HSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAI 134
           HSL +T  G +W+WGRN + QLG G  +       P+ VEGL    + +A      + A+
Sbjct: 159 HSLLITTEGKLWSWGRNEKGQLGHGDTKRVEA---PRLVEGLSHEVIVSAACGRNHTLAL 215

Query: 135 GDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLF 194
            + GS++ +G++K GQLGLG        P+++    G+ I K++ G   ++     G L+
Sbjct: 216 TETGSVFAFGENKMGQLGLGNQTDAVPSPAQI-MYNGQPITKMACGAEFSMIMDCKGNLY 274

Query: 195 GWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPI 254
            +G    G++G+            N D    +  +      E   + V+  +EK K   I
Sbjct: 275 SFGCPEYGQLGH------------NSDGKFIARAQRIEYDCELVPRRVAIFIEKTKDGQI 322

Query: 255 IWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFHP 314
           +  P +V    V D+ACG +H+LVL     + S G   YG+LG  +Q   M P  +    
Sbjct: 323 LPVPNVV----VRDVACGANHTLVLDSQKRVFSWGFGGYGRLGHAEQKDEMVPRLVKLFD 378

Query: 315 V------SISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPDNV 361
                   I +G   S A+ EV          G+  WG   +S+   M P  V
Sbjct: 379 FPGRGASQIYAGYTCSFAVSEV---------GGLFFWGATNTSRESTMYPKAV 422



 Score = 52.8 bits (125), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 57/186 (30%), Positives = 80/186 (43%), Gaps = 31/186 (16%)

Query: 56  PTRVPGLPSDV-TSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVE 114
           P  V GL  +V  S + G  H+LA+T  G+V+A+G N   QLG G      T   P   +
Sbjct: 191 PRLVEGLSHEVIVSAACGRNHTLALTETGSVFAFGENKMGQLGLG----NQTDAVPSPAQ 246

Query: 115 GLDQVNVCAAFASGVVSSAIGD-DGSLWVWGKSKRGQLGL---GKDITEA--------IV 162
            +         A G   S I D  G+L+ +G  + GQLG    GK I  A        +V
Sbjct: 247 IMYNGQPITKMACGAEFSMIMDCKGNLYSFGCPEYGQLGHNSDGKFIARAQRIEYDCELV 306

Query: 163 PSRVEALAGEK-------------IVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGK 209
           P RV A+  EK             +  V+ G  H L      ++F WG+   GR+G+  +
Sbjct: 307 PRRV-AIFIEKTKDGQILPVPNVVVRDVACGANHTLVLDSQKRVFSWGFGGYGRLGHAEQ 365

Query: 210 ALESSP 215
             E  P
Sbjct: 366 KDEMVP 371


>gi|355744958|gb|EHH49583.1| hypothetical protein EGM_00270, partial [Macaca fascicularis]
          Length = 427

 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 81/293 (27%), Positives = 130/293 (44%), Gaps = 35/293 (11%)

Query: 75  HSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAI 134
           HSL +T  G +W+WGRN + QLG G  +       P+ +EGL    + +A      + A+
Sbjct: 66  HSLLITTEGKLWSWGRNEKGQLGHGDTKRVEA---PRLIEGLSHEVIVSAACGRNHTLAL 122

Query: 135 GDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLF 194
            + GS++ +G++K GQLGLG        P+++    G+ I K++ G   ++     G L+
Sbjct: 123 TETGSVFAFGENKMGQLGLGNQTDAVPSPAQI-MYNGQPITKMACGAEFSMIMDCKGNLY 181

Query: 195 GWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPI 254
            +G    G++G+            N D    +  +      E   + V+  +EK K   I
Sbjct: 182 SFGCPEYGQLGH------------NSDGKFIARAQRIEYDCELVPRRVAIFIEKTKDGQI 229

Query: 255 IWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFHP 314
           +  P +V    V D+ACG +H+LVL     + S G   YG+LG  +Q   M P  +    
Sbjct: 230 LPVPNVV----VRDVACGANHTLVLDSQKRVFSWGFGGYGRLGHAEQKDEMVPRLVKLFD 285

Query: 315 V------SISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPDNV 361
                   I +G   S A+ EV          G+  WG   +S+   M P  V
Sbjct: 286 FPGRGASQIYAGYTCSFAVSEV---------GGLFFWGATNTSRESTMYPKAV 329



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 56/186 (30%), Positives = 80/186 (43%), Gaps = 31/186 (16%)

Query: 56  PTRVPGLPSDV-TSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVE 114
           P  + GL  +V  S + G  H+LA+T  G+V+A+G N   QLG G      T   P   +
Sbjct: 98  PRLIEGLSHEVIVSAACGRNHTLALTETGSVFAFGENKMGQLGLG----NQTDAVPSPAQ 153

Query: 115 GLDQVNVCAAFASGVVSSAIGD-DGSLWVWGKSKRGQLGL---GKDITEA--------IV 162
            +         A G   S I D  G+L+ +G  + GQLG    GK I  A        +V
Sbjct: 154 IMYNGQPITKMACGAEFSMIMDCKGNLYSFGCPEYGQLGHNSDGKFIARAQRIEYDCELV 213

Query: 163 PSRVEALAGEK-------------IVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGK 209
           P RV A+  EK             +  V+ G  H L      ++F WG+   GR+G+  +
Sbjct: 214 PRRV-AIFIEKTKDGQILPVPNVVVRDVACGANHTLVLDSQKRVFSWGFGGYGRLGHAEQ 272

Query: 210 ALESSP 215
             E  P
Sbjct: 273 KDEMVP 278


>gi|37360404|dbj|BAC98180.1| mKIAA1470 protein [Mus musculus]
          Length = 484

 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 81/293 (27%), Positives = 128/293 (43%), Gaps = 35/293 (11%)

Query: 75  HSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAI 134
           HSL +T  G +W+WGRN + QLG G  +       P+ +E L    +  A      + A+
Sbjct: 123 HSLLITTEGKLWSWGRNEKGQLGHGDTKRVEA---PRLIEALSHEAIVLAACGRNHTLAL 179

Query: 135 GDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLF 194
            D GS++ +G++K GQLGLG        P+++    G+ I K++ G   ++     G L+
Sbjct: 180 TDTGSVFAFGENKMGQLGLGNQTDAVPSPAQI-MYNGQPITKMACGAEFSMLMDCKGNLY 238

Query: 195 GWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPI 254
            +G    G++G+            N D    +  +      E   + V+  +EK K   I
Sbjct: 239 SFGCPEYGQLGH------------NSDGKFIARAQRIEYDCELVPRRVAIFIEKTKDGQI 286

Query: 255 IWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFH- 313
           +  P +V    V D+ACG +H+LVL     + S G   YG+LG  +Q   M P  +    
Sbjct: 287 LPVPNVV----VRDVACGANHTLVLDSQKRVFSWGFGGYGRLGHAEQKDEMVPRLVKLFD 342

Query: 314 -----PVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPDNV 361
                   I +G   S A+ EV          G+  WG   +S+   M P  V
Sbjct: 343 FPGRGATQIYAGYTCSFAVSEV---------GGLFFWGATNTSRESTMYPKAV 386



 Score = 49.3 bits (116), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 50/175 (28%), Positives = 75/175 (42%), Gaps = 30/175 (17%)

Query: 66  VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAF 125
           +   + G  H+LA+T+ G+V+A+G N   QLG G      T   P   + +         
Sbjct: 166 IVLAACGRNHTLALTDTGSVFAFGENKMGQLGLG----NQTDAVPSPAQIMYNGQPITKM 221

Query: 126 ASGVVSSAIGD-DGSLWVWGKSKRGQLGL---GKDITEA--------IVPSRVEALAGEK 173
           A G   S + D  G+L+ +G  + GQLG    GK I  A        +VP RV A+  EK
Sbjct: 222 ACGAEFSMLMDCKGNLYSFGCPEYGQLGHNSDGKFIARAQRIEYDCELVPRRV-AIFIEK 280

Query: 174 -------------IVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSP 215
                        +  V+ G  H L      ++F WG+   GR+G+  +  E  P
Sbjct: 281 TKDGQILPVPNVVVRDVACGANHTLVLDSQKRVFSWGFGGYGRLGHAEQKDEMVP 335


>gi|6630609|dbj|BAA88519.1| cyclin-E binding protein 1 [Homo sapiens]
          Length = 1024

 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 72/230 (31%), Positives = 114/230 (49%), Gaps = 24/230 (10%)

Query: 24  ASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVP-------GLPSDVTSVSAGHYHS 76
           + G  + ++G    G LG+        G  +  T  P       G+P  +  +SAG  HS
Sbjct: 154 SKGGELFAWGQNLHGQLGV--------GRKFPSTTTPQIVEHLAGVP--LAQISAGEAHS 203

Query: 77  LAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGD 136
           +A++ +G +++WG+N   QLG G  ES+   +DP  +EGLD   V      G  S+ +  
Sbjct: 204 MALSMSGNIYSWGKNECGQLGLGHTESK---DDPSLIEGLDNQKVEFVACGGSHSALLTQ 260

Query: 137 DGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTED-GKLFG 195
           DG L+ +G  K GQLG      E + P  V  L G ++ +++ G  H LA   D GK+F 
Sbjct: 261 DGLLFTFGAGKHGQLGHNSTQNE-LRPCLVAELVGYRVTQIACGRWHTLAYVSDLGKVFS 319

Query: 196 WGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEG 245
           +G   DG++GN G   +  PL   +  SS  + ++ S T EK   +++ G
Sbjct: 320 FGSGKDGQLGNGGTRDQLMPLPVKV--SSSEELKLESHTSEKELIMIAGG 367



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 81/281 (28%), Positives = 120/281 (42%), Gaps = 47/281 (16%)

Query: 66  VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAF 125
           +  ++ G YHSLA++  G ++AWG+N   QLG G      T   P+ VE L  V +    
Sbjct: 140 IIQITCGDYHSLALSKGGELFAWGQNLHGQLGVGRKFPSTT--TPQIVEHLAGVPLAQIS 197

Query: 126 ASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHAL 185
           A    S A+   G+++ WGK++ GQLGLG   ++   PS +E L  +K+  V+ G  H+ 
Sbjct: 198 AGEAHSMALSMSGNIYSWGKNECGQLGLGHTESKD-DPSLIEGLDNQKVEFVACGGSHSA 256

Query: 186 AQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEG 245
             T+DG LF +G    G++G+     E  P                         LV+E 
Sbjct: 257 LLTQDGLLFTFGAGKHGQLGHNSTQNELRPC------------------------LVAE- 291

Query: 246 MEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRN-GVLLSCGSNVYGQLGREKQDMG 304
                          + G  V  IACG  H+L    + G + S GS   GQLG       
Sbjct: 292 ---------------LVGYRVTQIACGRWHTLAYVSDLGKVFSFGSGKDGQLGNGGTRDQ 336

Query: 305 MFPVDINFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSW 345
           + P+ +    VS S  L       E     + GG + I+ W
Sbjct: 337 LMPLPVK---VSSSEELKLESHTSEKELIMIAGGNQSILLW 374



 Score = 48.5 bits (114), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 47/181 (25%), Positives = 89/181 (49%), Gaps = 20/181 (11%)

Query: 165 RVEALAGEK-IVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDR- 222
           R E++  EK I++++ G  H+LA ++ G+LF WG +  G++G +G+   S+     ++  
Sbjct: 130 RFESILQEKKIIQITCGDYHSLALSKGGELFAWGQNLHGQLG-VGRKFPSTTTPQIVEHL 188

Query: 223 -----SSESDQEISSSTIEKAQKLVSEGMEKEKYMPI-----IWEPFLVEGVE---VVDI 269
                +  S  E  S  +  +  + S G  +   + +       +P L+EG++   V  +
Sbjct: 189 AGVPLAQISAGEAHSMALSMSGNIYSWGKNECGQLGLGHTESKDDPSLIEGLDNQKVEFV 248

Query: 270 ACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDIN----FHPVSISSGLGHSL 325
           ACG  HS +L ++G+L + G+  +GQLG       + P  +     +    I+ G  H+L
Sbjct: 249 ACGGSHSALLTQDGLLFTFGAGKHGQLGHNSTQNELRPCLVAELVGYRVTQIACGRWHTL 308

Query: 326 A 326
           A
Sbjct: 309 A 309



 Score = 47.0 bits (110), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 37/120 (30%), Positives = 62/120 (51%), Gaps = 16/120 (13%)

Query: 260 LVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFH----PV 315
           +++  +++ I CG  HSL L + G L + G N++GQLG  ++        I  H    P+
Sbjct: 134 ILQEKKIIQITCGDYHSLALSKGGELFAWGQNLHGQLGVGRKFPSTTTPQIVEHLAGVPL 193

Query: 316 S-ISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQ--LGRMGPDNVPLVVEGLEGES 372
           + IS+G  HS+A+      +++G    I SWG N   Q  LG     + P ++EGL+ + 
Sbjct: 194 AQISAGEAHSMAL------SMSG---NIYSWGKNECGQLGLGHTESKDDPSLIEGLDNQK 244


>gi|74177548|dbj|BAB30989.3| unnamed protein product [Mus musculus]
          Length = 596

 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 59/179 (32%), Positives = 101/179 (56%), Gaps = 9/179 (5%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPS-DVTSVSAGHYHSLAVTNNGAVWA 87
           V  +G GS+G LG+          ++ PT++  L    +  VS GHYHSLA++ +G V++
Sbjct: 52  VFPWGAGSEGQLGIGE----FKEISFMPTKIKALAGIKIIQVSCGHYHSLALSEDGHVFS 107

Query: 88  WGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSK 147
           WGRN+E QLG G  ++  +   P++V+ L+ + +    A G  S A+   G+ + WG ++
Sbjct: 108 WGRNSEGQLGLG--KNSRSQAIPQKVKSLEGIPLAQVAAGGTHSFALSLTGTSFGWGSNR 165

Query: 148 RGQLGL-GKDITEAIV-PSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRI 204
            GQL L G  + E I  P  + AL    ++ +S G+ H    TE+G++F +G ++ G++
Sbjct: 166 SGQLALSGNKVKEQIYKPHSIGALKNLSVIYISCGYEHTAVLTEEGQVFTFGGNSSGQL 224



 Score = 91.7 bits (226), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 64/234 (27%), Positives = 108/234 (46%), Gaps = 45/234 (19%)

Query: 66  VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAF 125
           V  VS G  HS+AV + G V+ WG  +E QLG G  +  +    P +++ L  + +    
Sbjct: 33  VDLVSCGKEHSVAVCHKGKVFPWGAGSEGQLGIGEFKEISFM--PTKIKALAGIKIIQVS 90

Query: 126 ASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHAL 185
                S A+ +DG ++ WG++  GQLGLGK+     +P +V++L G  + +V+ G  H+ 
Sbjct: 91  CGHYHSLALSEDGHVFSWGRNSEGQLGLGKNSRSQAIPQKVKSLEGIPLAQVAAGGTHSF 150

Query: 186 AQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEG 245
           A +  G  FGWG +  G++   G  +                                  
Sbjct: 151 ALSLTGTSFGWGSNRSGQLALSGNKV---------------------------------- 176

Query: 246 MEKEKYMPIIWEPFLV---EGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQL 296
             KE+    I++P  +   + + V+ I+CG++H+ VL   G + + G N  GQL
Sbjct: 177 --KEQ----IYKPHSIGALKNLSVIYISCGYEHTAVLTEEGQVFTFGGNSSGQL 224



 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 56/214 (26%), Positives = 89/214 (41%), Gaps = 54/214 (25%)

Query: 149 GQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLG 208
           GQLG  +D +    P  ++AL    +  VS G  H++A    GK+F WG  ++G++G +G
Sbjct: 9   GQLGQRRDQSTE-RPEPIQALNDLHVDLVSCGKEHSVAVCHKGKVFPWGAGSEGQLG-IG 66

Query: 209 KALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVD 268
           +  E S + + I                                        + G++++ 
Sbjct: 67  EFKEISFMPTKIKA--------------------------------------LAGIKIIQ 88

Query: 269 IACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGM-FPVDIN----FHPVSISSGLGH 323
           ++CG  HSL L  +G + S G N  GQLG  K       P  +          +++G  H
Sbjct: 89  VSCGHYHSLALSEDGHVFSWGRNSEGQLGLGKNSRSQAIPQKVKSLEGIPLAQVAAGGTH 148

Query: 324 SLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMG 357
           S A+      ++TG + G   WG NRS QL   G
Sbjct: 149 SFAL------SLTGTSFG---WGSNRSGQLALSG 173



 Score = 38.9 bits (89), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 33/111 (29%), Positives = 52/111 (46%), Gaps = 19/111 (17%)

Query: 269 IACGFDHSLVLGRNGVLLSCGSNVYGQLGR-EKQDMGMFPVDIN----FHPVSISSGLGH 323
           ++CG +HS+ +   G +   G+   GQLG  E +++   P  I        + +S G  H
Sbjct: 36  VSCGKEHSVAVCHKGKVFPWGAGSEGQLGIGEFKEISFMPTKIKALAGIKIIQVSCGHYH 95

Query: 324 SLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPDN----VPLVVEGLEG 370
           SLA+ E            + SWG N   QLG +G ++    +P  V+ LEG
Sbjct: 96  SLALSE---------DGHVFSWGRNSEGQLG-LGKNSRSQAIPQKVKSLEG 136


>gi|110825982|ref|NP_057407.2| E3 ISG15--protein ligase HERC5 [Homo sapiens]
 gi|296434523|sp|Q9UII4.2|HERC5_HUMAN RecName: Full=E3 ISG15--protein ligase HERC5; AltName:
           Full=Cyclin-E-binding protein 1; AltName: Full=HECT
           domain and RCC1-like domain-containing protein 5
 gi|119626425|gb|EAX06020.1| hect domain and RLD 5 [Homo sapiens]
          Length = 1024

 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 72/230 (31%), Positives = 114/230 (49%), Gaps = 24/230 (10%)

Query: 24  ASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVP-------GLPSDVTSVSAGHYHS 76
           + G  + ++G    G LG+        G  +  T  P       G+P  +  +SAG  HS
Sbjct: 154 SKGGELFAWGQNLHGQLGV--------GRKFPSTTTPQIVEHLAGVP--LAQISAGEAHS 203

Query: 77  LAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGD 136
           +A++ +G +++WG+N   QLG G  ES+   +DP  +EGLD   V      G  S+ +  
Sbjct: 204 MALSMSGNIYSWGKNECGQLGLGHTESK---DDPSLIEGLDNQKVEFVACGGSHSALLTQ 260

Query: 137 DGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTED-GKLFG 195
           DG L+ +G  K GQLG      E + P  V  L G ++ +++ G  H LA   D GK+F 
Sbjct: 261 DGLLFTFGAGKHGQLGHNSTQNE-LRPCLVAELVGYRVTQIACGRWHTLAYVSDLGKVFS 319

Query: 196 WGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEG 245
           +G   DG++GN G   +  PL   +  SS  + ++ S T EK   +++ G
Sbjct: 320 FGSGKDGQLGNGGTRDQLMPLPVKV--SSSEELKLESHTSEKELIMIAGG 367



 Score = 80.5 bits (197), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 81/281 (28%), Positives = 120/281 (42%), Gaps = 47/281 (16%)

Query: 66  VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAF 125
           +  ++ G YHSLA++  G ++AWG+N   QLG G      T   P+ VE L  V +    
Sbjct: 140 IIQITCGDYHSLALSKGGELFAWGQNLHGQLGVGRKFPSTT--TPQIVEHLAGVPLAQIS 197

Query: 126 ASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHAL 185
           A    S A+   G+++ WGK++ GQLGLG   ++   PS +E L  +K+  V+ G  H+ 
Sbjct: 198 AGEAHSMALSMSGNIYSWGKNECGQLGLGHTESKD-DPSLIEGLDNQKVEFVACGGSHSA 256

Query: 186 AQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEG 245
             T+DG LF +G    G++G+     E  P                         LV+E 
Sbjct: 257 LLTQDGLLFTFGAGKHGQLGHNSTQNELRPC------------------------LVAE- 291

Query: 246 MEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRN-GVLLSCGSNVYGQLGREKQDMG 304
                          + G  V  IACG  H+L    + G + S GS   GQLG       
Sbjct: 292 ---------------LVGYRVTQIACGRWHTLAYVSDLGKVFSFGSGKDGQLGNGGTRDQ 336

Query: 305 MFPVDINFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSW 345
           + P+ +    VS S  L       E     + GG + I+ W
Sbjct: 337 LMPLPVK---VSSSEELKLESHTSEKELIMIAGGNQSILLW 374



 Score = 48.5 bits (114), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 47/181 (25%), Positives = 89/181 (49%), Gaps = 20/181 (11%)

Query: 165 RVEALAGEK-IVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDR- 222
           R E++  EK I++++ G  H+LA ++ G+LF WG +  G++G +G+   S+     ++  
Sbjct: 130 RFESILQEKKIIQITCGDYHSLALSKGGELFAWGQNLHGQLG-VGRKFPSTTTPQIVEHL 188

Query: 223 -----SSESDQEISSSTIEKAQKLVSEGMEKEKYMPI-----IWEPFLVEGVE---VVDI 269
                +  S  E  S  +  +  + S G  +   + +       +P L+EG++   V  +
Sbjct: 189 AGVPLAQISAGEAHSMALSMSGNIYSWGKNECGQLGLGHTESKDDPSLIEGLDNQKVEFV 248

Query: 270 ACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDIN----FHPVSISSGLGHSL 325
           ACG  HS +L ++G+L + G+  +GQLG       + P  +     +    I+ G  H+L
Sbjct: 249 ACGGSHSALLTQDGLLFTFGAGKHGQLGHNSTQNELRPCLVAELVGYRVTQIACGRWHTL 308

Query: 326 A 326
           A
Sbjct: 309 A 309



 Score = 47.0 bits (110), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 37/120 (30%), Positives = 62/120 (51%), Gaps = 16/120 (13%)

Query: 260 LVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFH----PV 315
           +++  +++ I CG  HSL L + G L + G N++GQLG  ++        I  H    P+
Sbjct: 134 ILQEKKIIQITCGDYHSLALSKGGELFAWGQNLHGQLGVGRKFPSTTTPQIVEHLAGVPL 193

Query: 316 S-ISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQ--LGRMGPDNVPLVVEGLEGES 372
           + IS+G  HS+A+      +++G    I SWG N   Q  LG     + P ++EGL+ + 
Sbjct: 194 AQISAGEAHSMAL------SMSG---NIYSWGKNECGQLGLGHTESKDDPSLIEGLDNQK 244


>gi|12856817|dbj|BAB30794.1| unnamed protein product [Mus musculus]
          Length = 913

 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 68/252 (26%), Positives = 117/252 (46%), Gaps = 29/252 (11%)

Query: 66  VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAF 125
           +  V+ G  HSLA+++ G +++WG  ++ QLG    E       P+ ++ L+Q  +    
Sbjct: 86  IIHVACGESHSLALSDRGQLFSWGAGSDGQLGLMTTEDSVAV--PRLIQKLNQQTILQVS 143

Query: 126 ASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHAL 185
                  A+  DG  + WGK+  GQLGLGK+      P RV +L G  + +V+ G  H+ 
Sbjct: 144 CGNWHCLALAADGQFFTWGKNSHGQLGLGKEFPSQTSPQRVRSLEGIPLAQVAAGGAHSF 203

Query: 186 AQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSE----SDQEISSSTIEKA--- 238
           A +  G +FGWG +  G++G   +    SP    + R+ +    S  E  ++ + K+   
Sbjct: 204 ALSLSGAVFGWGMNNAGQLGLSDEKDRESPCHVKLLRTQKVVYISCGEEHTAVLTKSGGV 263

Query: 239 ------------QKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVL-GRNGVL 285
                          V++ +   + + ++       G EV  IACG  H+L L   +G++
Sbjct: 264 FTFGAGSCGQLGHDSVNDEVNPRRVLELM-------GSEVTQIACGRQHTLALVPSSGLI 316

Query: 286 LSCGSNVYGQLG 297
            + G    GQLG
Sbjct: 317 YAFGCGAKGQLG 328



 Score = 80.5 bits (197), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 80/280 (28%), Positives = 126/280 (45%), Gaps = 29/280 (10%)

Query: 39  ALGLPTSLTGVGGDAYEPTRVPGLPSD--VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQL 96
           +LG P   + + G   EP +V    SD  +  V+ G  HS+ +  +G V+  G N + QL
Sbjct: 8   SLGQPGISSNLQGIVAEP-QVCRFVSDRSIKEVACGGNHSVFLLEDGEVYTCGVNTKGQL 66

Query: 97  GRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKD 156
           G          N P+++  L   ++         S A+ D G L+ WG    GQLGL   
Sbjct: 67  GH-----EREGNKPEQIGALADQHIIHVACGESHSLALSDRGQLFSWGAGSDGQLGLMTT 121

Query: 157 ITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPL 216
                VP  ++ L  + I++VS G  H LA   DG+ F WG ++ G++G LGK   S   
Sbjct: 122 EDSVAVPRLIQKLNQQTILQVSCGNWHCLALAADGQFFTWGKNSHGQLG-LGKEFPSQTS 180

Query: 217 DSNIDRSSESDQEIS-------SSTIEKAQKLVSEGM----------EKEKYMPIIWEPF 259
              + RS E             S  +  +  +   GM          EK++  P   +  
Sbjct: 181 PQRV-RSLEGIPLAQVAAGGAHSFALSLSGAVFGWGMNNAGQLGLSDEKDRESPCHVK-- 237

Query: 260 LVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGRE 299
           L+   +VV I+CG +H+ VL ++G + + G+   GQLG +
Sbjct: 238 LLRTQKVVYISCGEEHTAVLTKSGGVFTFGAGSCGQLGHD 277


>gi|330836303|ref|YP_004410944.1| cell wall/surface repeat protein [Sphaerochaeta coccoides DSM
           17374]
 gi|329748206|gb|AEC01562.1| cell wall/surface repeat protein [Sphaerochaeta coccoides DSM
           17374]
          Length = 950

 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 90/341 (26%), Positives = 155/341 (45%), Gaps = 75/341 (21%)

Query: 51  GDAYEPTRVPGLPSD-----------VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRG 99
           GD+Y       +P+D           + +VSAG Y+++ +  +G +WA G+N   QLG G
Sbjct: 550 GDSYVAGESFTMPADDVTLYAQWLVKIKAVSAGDYYTIILKMDGTLWATGQNTYGQLGDG 609

Query: 100 ALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGD--------DGSLWVWGKSKRGQL 151
            L +R T   P +V+    +N    F + VV+ + G+        DG+LW  GK+  GQL
Sbjct: 610 TLINRYT---PVQVKASTTLN---DFMTDVVAVSTGERHTMILKKDGTLWATGKNYFGQL 663

Query: 152 GLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKAL 211
           GLG    +   P++V    G  +  VS G  + +   +D  L+  G+++ G++G+   + 
Sbjct: 664 GLGSQEPDRSTPTQV-TFMGTDVAAVSTGHSYTMILKKDDTLWATGFNSYGQLGDGTTSN 722

Query: 212 ESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIAC 271
            +SP+           Q  +S+T+                       F+    +V  ++ 
Sbjct: 723 RTSPV-----------QVKASTTLND---------------------FM---TDVAAVST 747

Query: 272 GFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDIN---FHPVSISSGLGHSLAIC 328
           G DH+++L ++G L + G N  GQLG + Q     PV +        ++S+G  H+L + 
Sbjct: 748 GDDHTMILKKDGTLWAIGRNYSGQLGDDTQTDRSTPVQVTSMGTDVAAVSAGGNHTLILK 807

Query: 329 EVRSSNVTGGARGIVSWGWNRSSQLGRMGPD--NVPLVVEG 367
           +  +  VT         G+N   QLG    D  N+P+ V+G
Sbjct: 808 KDGTLWVT---------GYNGFGQLGDSTTDNRNMPVQVKG 839



 Score = 68.9 bits (167), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 54/172 (31%), Positives = 90/172 (52%), Gaps = 11/172 (6%)

Query: 52  DAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPK 111
           D   P +V  + +DV +VSAG  H+L +  +G +W  G N   QLG    ++R   N P 
Sbjct: 779 DRSTPVQVTSMGTDVAAVSAGGNHTLILKKDGTLWVTGYNGFGQLGDSTTDNR---NMPV 835

Query: 112 RVEGLDQV----NVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEA--IVPSR 165
           +V+G   V    +V AA A    +  +  DG+LW  G ++ GQLGLG   +E    +P +
Sbjct: 836 QVKGSGGVGFMTDVKAASAGMYHTMILKKDGTLWATGGNEFGQLGLGDSGSETSRSIPVQ 895

Query: 166 VEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGK-ALESSPL 216
           + ++ G  +  VS G  H +   +DG L+  G +   ++GN G  ++ ++P+
Sbjct: 896 ITSM-GNDVADVSTGRFHTMILKKDGTLWATGRNNFAQLGNGGDTSVRTTPV 946



 Score = 55.5 bits (132), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 40/136 (29%), Positives = 64/136 (47%), Gaps = 11/136 (8%)

Query: 32  FGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRN 91
            GD +     +P  + G GG         G  +DV + SAG YH++ +  +G +WA G N
Sbjct: 823 LGDSTTDNRNMPVQVKGSGG--------VGFMTDVKAASAGMYHTMILKKDGTLWATGGN 874

Query: 92  NEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAI-GDDGSLWVWGKSKRGQ 150
              QLG G   S  + + P ++  +   N  A  ++G   + I   DG+LW  G++   Q
Sbjct: 875 EFGQLGLGDSGSETSRSIPVQITSMG--NDVADVSTGRFHTMILKKDGTLWATGRNNFAQ 932

Query: 151 LGLGKDITEAIVPSRV 166
           LG G D +    P ++
Sbjct: 933 LGNGGDTSVRTTPVQI 948


>gi|187954501|gb|AAI40717.1| Hect domain and RLD 5 [Homo sapiens]
          Length = 1024

 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 72/230 (31%), Positives = 114/230 (49%), Gaps = 24/230 (10%)

Query: 24  ASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVP-------GLPSDVTSVSAGHYHS 76
           + G  + ++G    G LG+        G  +  T  P       G+P  +  +SAG  HS
Sbjct: 154 SKGGELFAWGQNLHGQLGV--------GRKFPSTTTPQIVEHLAGVP--LAQISAGEAHS 203

Query: 77  LAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGD 136
           +A++ +G +++WG+N   QLG G  ES+   +DP  +EGLD   V      G  S+ +  
Sbjct: 204 MALSMSGNIYSWGKNECGQLGLGHTESK---DDPSLIEGLDNQKVEFVACGGSHSALLTQ 260

Query: 137 DGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTED-GKLFG 195
           DG L+ +G  K GQLG      E + P  V  L G ++ +++ G  H LA   D GK+F 
Sbjct: 261 DGLLFTFGAGKHGQLGHNSTQNE-LRPCLVAELVGYRVTQIACGRWHTLAYVSDLGKVFS 319

Query: 196 WGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEG 245
           +G   DG++GN G   +  PL   +  SS  + ++ S T EK   +++ G
Sbjct: 320 FGSGKDGQLGNGGTRDQLMPLPVKV--SSSEELKLESHTSEKELIMIAGG 367



 Score = 80.5 bits (197), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 81/281 (28%), Positives = 120/281 (42%), Gaps = 47/281 (16%)

Query: 66  VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAF 125
           +  ++ G YHSLA++  G ++AWG+N   QLG G      T   P+ VE L  V +    
Sbjct: 140 IIQITCGDYHSLALSKGGELFAWGQNLHGQLGVGRKFPSTT--TPQIVEHLAGVPLAQIS 197

Query: 126 ASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHAL 185
           A    S A+   G+++ WGK++ GQLGLG   ++   PS +E L  +K+  V+ G  H+ 
Sbjct: 198 AGEAHSMALSMSGNIYSWGKNECGQLGLGHTESKD-DPSLIEGLDNQKVEFVACGGSHSA 256

Query: 186 AQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEG 245
             T+DG LF +G    G++G+     E  P                         LV+E 
Sbjct: 257 LLTQDGLLFTFGAGKHGQLGHNSTQNELRPC------------------------LVAE- 291

Query: 246 MEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRN-GVLLSCGSNVYGQLGREKQDMG 304
                          + G  V  IACG  H+L    + G + S GS   GQLG       
Sbjct: 292 ---------------LVGYRVTQIACGRWHTLAYVSDLGKVFSFGSGKDGQLGNGGTRDQ 336

Query: 305 MFPVDINFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSW 345
           + P+ +    VS S  L       E     + GG + I+ W
Sbjct: 337 LMPLPVK---VSSSEELKLESHTSEKELIMIAGGNQSILLW 374



 Score = 48.5 bits (114), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 47/181 (25%), Positives = 89/181 (49%), Gaps = 20/181 (11%)

Query: 165 RVEALAGEK-IVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDR- 222
           R E++  EK I++++ G  H+LA ++ G+LF WG +  G++G +G+   S+     ++  
Sbjct: 130 RFESILQEKKIIQITCGDYHSLALSKGGELFAWGQNLHGQLG-VGRKFPSTTTPQIVEHL 188

Query: 223 -----SSESDQEISSSTIEKAQKLVSEGMEKEKYMPI-----IWEPFLVEGVE---VVDI 269
                +  S  E  S  +  +  + S G  +   + +       +P L+EG++   V  +
Sbjct: 189 AGVPLAQISAGEAHSMALSMSGNIYSWGKNECGQLGLGHTESKDDPSLIEGLDNQKVEFV 248

Query: 270 ACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDIN----FHPVSISSGLGHSL 325
           ACG  HS +L ++G+L + G+  +GQLG       + P  +     +    I+ G  H+L
Sbjct: 249 ACGGSHSALLTQDGLLFTFGAGKHGQLGHNSTQNELRPCLVAELVGYRVTQIACGRWHTL 308

Query: 326 A 326
           A
Sbjct: 309 A 309



 Score = 47.0 bits (110), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 37/120 (30%), Positives = 62/120 (51%), Gaps = 16/120 (13%)

Query: 260 LVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFH----PV 315
           +++  +++ I CG  HSL L + G L + G N++GQLG  ++        I  H    P+
Sbjct: 134 ILQEKKIIQITCGDYHSLALSKGGELFAWGQNLHGQLGVGRKFPSTTTPQIVEHLAGVPL 193

Query: 316 S-ISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQ--LGRMGPDNVPLVVEGLEGES 372
           + IS+G  HS+A+      +++G    I SWG N   Q  LG     + P ++EGL+ + 
Sbjct: 194 AQISAGEAHSMAL------SMSG---NIYSWGKNECGQLGLGHTESKDDPSLIEGLDNQK 244


>gi|291404283|ref|XP_002718505.1| PREDICTED: hect domain and RLD 4 isoform 2 [Oryctolagus cuniculus]
          Length = 1049

 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 65/245 (26%), Positives = 114/245 (46%), Gaps = 43/245 (17%)

Query: 55  EPTRVPGLPS-DVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRV 113
           +P +V  L + ++ +VS G  H+LA+ + G V+AWG +++ QLG   L S      P+ +
Sbjct: 74  KPEQVVALDAQNIVAVSCGEAHTLALNDKGQVYAWGLDSDGQLG--LLGSEECIRVPRNI 131

Query: 114 EGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEK 173
           + L  + +         S A+     ++ WG++K GQLGLG D  +   P  +++L G  
Sbjct: 132 KSLSDIQIVQVACGYYHSLALSKASEVFCWGQNKYGQLGLGIDCKKQTSPQLIKSLLGIP 191

Query: 174 IVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSS 233
            ++V+ G  H+   T  G +FGWG +  G++G          L+                
Sbjct: 192 FMQVAAGGAHSFVLTLSGAIFGWGRNKFGQLG----------LND--------------- 226

Query: 234 TIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVY 293
                        E ++Y+P + +   +   ++V I CG DH+  L + G + + G+  Y
Sbjct: 227 -------------ENDRYVPNLLKS--LRSQKIVYICCGEDHTAALTKEGGVFTFGAGGY 271

Query: 294 GQLGR 298
           GQLG 
Sbjct: 272 GQLGH 276



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 61/192 (31%), Positives = 100/192 (52%), Gaps = 16/192 (8%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVP-GLPS----DVTSVSAGHYHSLAVTNNG 83
           V ++G  S G LGL      +G +  E  RVP  + S     +  V+ G+YHSLA++   
Sbjct: 105 VYAWGLDSDGQLGL------LGSE--ECIRVPRNIKSLSDIQIVQVACGYYHSLALSKAS 156

Query: 84  AVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVW 143
            V+ WG+N   QLG G    + T   P+ ++ L  +      A G  S  +   G+++ W
Sbjct: 157 EVFCWGQNKYGQLGLGIDCKKQT--SPQLIKSLLGIPFMQVAAGGAHSFVLTLSGAIFGW 214

Query: 144 GKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGR 203
           G++K GQLGL  D  +  VP+ +++L  +KIV +  G  H  A T++G +F +G    G+
Sbjct: 215 GRNKFGQLGLN-DENDRYVPNLLKSLRSQKIVYICCGEDHTAALTKEGGVFTFGAGGYGQ 273

Query: 204 IGNLGKALESSP 215
           +G+   + E +P
Sbjct: 274 LGHNSTSHEINP 285



 Score = 71.6 bits (174), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 68/273 (24%), Positives = 111/273 (40%), Gaps = 57/273 (20%)

Query: 87  AWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKS 146
            WG  +  QLG G ++      +P++ +      V         +  + DDG+++  G +
Sbjct: 3   CWGNASFGQLGLGGIDEEIVL-EPRKSDFFINKKVRDVGCGLRHTVFVLDDGTVYTCGCN 61

Query: 147 KRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGN 206
             GQLG  K   +   P +V AL  + IV VS G  H LA  + G+++ WG  +DG++G 
Sbjct: 62  DLGQLGHEKSRKK---PEQVVALDAQNIVAVSCGEAHTLALNDKGQVYAWGLDSDGQLGL 118

Query: 207 LGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEV 266
           LG   E   +  NI   S+                                      +++
Sbjct: 119 LGSE-ECIRVPRNIKSLSD--------------------------------------IQI 139

Query: 267 VDIACGFDHSLVLGRNGVLLSCGSNVYGQLG-----REKQDMGMFPVDINFHPVSISSGL 321
           V +ACG+ HSL L +   +   G N YGQLG     +++    +    +    + +++G 
Sbjct: 140 VQVACGYYHSLALSKASEVFCWGQNKYGQLGLGIDCKKQTSPQLIKSLLGIPFMQVAAGG 199

Query: 322 GHSLAICEVRSSNVTGGARGIVSWGWNRSSQLG 354
            HS  +          GA  I  WG N+  QLG
Sbjct: 200 AHSFVL-------TLSGA--IFGWGRNKFGQLG 223


>gi|355557600|gb|EHH14380.1| hypothetical protein EGK_00297, partial [Macaca mulatta]
          Length = 427

 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 81/293 (27%), Positives = 130/293 (44%), Gaps = 35/293 (11%)

Query: 75  HSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAI 134
           HSL +T  G +W+WGRN + QLG G  +       P+ +EGL    + +A      + A+
Sbjct: 66  HSLLITTEGKLWSWGRNEKGQLGHGDTKRVEA---PRLIEGLSHEVIVSAACGRNHTLAL 122

Query: 135 GDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLF 194
            + GS++ +G++K GQLGLG        P+++    G+ I K++ G   ++     G L+
Sbjct: 123 TETGSVFAFGENKMGQLGLGNQTDAVPSPAQI-MYNGQPITKMACGAEFSMIMDCKGNLY 181

Query: 195 GWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPI 254
            +G    G++G+            N D    +  +      E   + V+  +EK K   I
Sbjct: 182 SFGCPEYGQLGH------------NSDGKFIARAQRIEYDCELVPRRVAIFIEKTKDGQI 229

Query: 255 IWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFHP 314
           +  P +V    V D+ACG +H+LVL     + S G   YG+LG  +Q   M P  +    
Sbjct: 230 LPVPNVV----VRDVACGANHTLVLDSQKRVFSWGFGGYGRLGHAEQKDEMVPRLVKLFD 285

Query: 315 V------SISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPDNV 361
                   I +G   S A+ EV          G+  WG   +S+   M P  V
Sbjct: 286 FPGRGASQIYAGYTCSFAVSEV---------GGLFFWGATNTSRESTMYPKAV 329



 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 56/186 (30%), Positives = 80/186 (43%), Gaps = 31/186 (16%)

Query: 56  PTRVPGLPSDV-TSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVE 114
           P  + GL  +V  S + G  H+LA+T  G+V+A+G N   QLG G      T   P   +
Sbjct: 98  PRLIEGLSHEVIVSAACGRNHTLALTETGSVFAFGENKMGQLGLG----NQTDAVPSPAQ 153

Query: 115 GLDQVNVCAAFASGVVSSAIGD-DGSLWVWGKSKRGQLGL---GKDITEA--------IV 162
            +         A G   S I D  G+L+ +G  + GQLG    GK I  A        +V
Sbjct: 154 IMYNGQPITKMACGAEFSMIMDCKGNLYSFGCPEYGQLGHNSDGKFIARAQRIEYDCELV 213

Query: 163 PSRVEALAGEK-------------IVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGK 209
           P RV A+  EK             +  V+ G  H L      ++F WG+   GR+G+  +
Sbjct: 214 PRRV-AIFIEKTKDGQILPVPNVVVRDVACGANHTLVLDSQKRVFSWGFGGYGRLGHAEQ 272

Query: 210 ALESSP 215
             E  P
Sbjct: 273 KDEMVP 278


>gi|449280845|gb|EMC88070.1| Secretion-regulating guanine nucleotide exchange factor [Columba
           livia]
          Length = 407

 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 92/316 (29%), Positives = 135/316 (42%), Gaps = 41/316 (12%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAW 88
           V+S G  S G LG+P     + G    P ++  L   V  V+AG  H+LA T +G V  W
Sbjct: 112 VLSCGSNSFGQLGVPQ----ISGPCLIPQKIESLKEKVVDVAAGLRHALAATESGLVLQW 167

Query: 89  GRNNEVQLGRG----ALESRATWNDPKRVEGLDQVNVCAAFAS---GVVSSAIGDDGSLW 141
           G     Q  R      L    T  +P +V     +  C+ + S      S  I D+G L+
Sbjct: 168 GTGMAAQAKRANPGKTLPLFLTAKEPCKVTDGAYILWCSIYISLSTNFTSLLIVDEGHLY 227

Query: 142 VWGKSKRGQLGLGKDITEAIVPSRVEA--LAGEKIVKVSFGWGHALAQTEDGKLFGWGYS 199
            WG +K GQL + K++  A  P ++E    + EKI  V  GW H +AQTE GK+F WG +
Sbjct: 228 AWGSNKHGQL-VSKEVFLA-EPKKIETRFFSHEKIGAVWSGWTHLVAQTETGKVFTWGRA 285

Query: 200 ADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPF 259
             G++G      +       +D  S    +  +      + L+   +            F
Sbjct: 286 DYGQLGRRAMVPDGQEAVIKLDSVSPHCPQTGTEKRNGNESLIIRHLH-----------F 334

Query: 260 LVEGVEVVDIACGFDHSL-VLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDIN----FHP 314
           L        IACG +H+L V+G     LS G N +G  G   +     P  I        
Sbjct: 335 L--------IACGSEHNLAVVGDR--CLSWGWNEHGMCGDGTEANVHVPKTIKALSYAKQ 384

Query: 315 VSISSGLGHSLAICEV 330
           + I  G GHS+A+C+ 
Sbjct: 385 ILIGCGAGHSMALCQT 400



 Score = 58.5 bits (140), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 68/261 (26%), Positives = 105/261 (40%), Gaps = 33/261 (12%)

Query: 65  DVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAA 124
           D+ S++ G  HS  +T  G ++  G N   QLG    +    +     V G     V   
Sbjct: 40  DIKSITGGGGHSALITGAGELFVCGHNRHGQLGLNHTDDVLHFTLCAAVSGFGVKQVACG 99

Query: 125 FASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHA 184
           +   ++    GD  S    G +  GQLG+ +     ++P ++E+L  EK+V V+ G  HA
Sbjct: 100 WDFTIILVGSGDVLSC---GSNSFGQLGVPQISGPCLIPQKIESLK-EKVVDVAAGLRHA 155

Query: 185 LAQTEDGKLFGW--GYSADGRIGNLGKALESSPLDSNIDRSSE---------SDQEISSS 233
           LA TE G +  W  G +A  +  N GK L   PL        +             IS S
Sbjct: 156 LAATESGLVLQWGTGMAAQAKRANPGKTL---PLFLTAKEPCKVTDGAYILWCSIYISLS 212

Query: 234 TIEKAQKLVSEG-------------MEKEKYM--PIIWEPFLVEGVEVVDIACGFDHSLV 278
           T   +  +V EG             + KE ++  P   E       ++  +  G+ H + 
Sbjct: 213 TNFTSLLIVDEGHLYAWGSNKHGQLVSKEVFLAEPKKIETRFFSHEKIGAVWSGWTHLVA 272

Query: 279 LGRNGVLLSCGSNVYGQLGRE 299
               G + + G   YGQLGR 
Sbjct: 273 QTETGKVFTWGRADYGQLGRR 293



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 60/238 (25%), Positives = 102/238 (42%), Gaps = 57/238 (23%)

Query: 139 SLWVWGKSKRGQLGLGKDITEAIVPSRVE--ALAGEKIVKVSFGWGHALAQTEDGKLFGW 196
            +++ G +  GQLGLG    + +VP  ++  +   + I  ++ G GH+   T  G+LF  
Sbjct: 5   CVYLKGANSYGQLGLGHK-EDVLVPQSLKDVSCKCQDIKSITGGGGHSALITGAGELFVC 63

Query: 197 GYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIW 256
           G++  G++G          L+   D        +   T+  A                  
Sbjct: 64  GHNRHGQLG----------LNHTDD--------VLHFTLCAA------------------ 87

Query: 257 EPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREK-QDMGMFPVDINF--- 312
               V G  V  +ACG+D +++L  +G +LSCGSN +GQLG  +     + P  I     
Sbjct: 88  ----VSGFGVKQVACGWDFTIILVGSGDVLSCGSNSFGQLGVPQISGPCLIPQKIESLKE 143

Query: 313 HPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGP-DNVPLVVEGLE 369
             V +++GL H+LA  E         +  ++ WG   ++Q  R  P   +PL +   E
Sbjct: 144 KVVDVAAGLRHALAATE---------SGLVLQWGTGMAAQAKRANPGKTLPLFLTAKE 192


>gi|444729789|gb|ELW70193.1| putative E3 ubiquitin-protein ligase HERC3 [Tupaia chinensis]
          Length = 983

 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 70/248 (28%), Positives = 116/248 (46%), Gaps = 21/248 (8%)

Query: 66  VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAF 125
           +  V+ G  HSLA+++ G +++WG  ++ QLG    E       P+ ++ L+Q  +    
Sbjct: 86  IIHVACGESHSLALSDQGQLFSWGAGSDGQLGLMTTEDSVAV--PRLIQKLNQQTILQVS 143

Query: 126 ASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHAL 185
                  A+  DG  + WGK+  GQLGLGK+      P RV +L G  + +V+ G  H+ 
Sbjct: 144 CGNWHCLALAADGQFFTWGKNSHGQLGLGKEFPSQASPQRVRSLEGIPLAQVAAGGAHSF 203

Query: 186 AQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSE----SDQEISSSTIEKAQKL 241
           A +  G +FGWG +  G++G   +    SP    + R+ +    S  E  ++ + K+  +
Sbjct: 204 ALSLSGAVFGWGMNNAGQLGLSDEKDRESPCHVKLLRTQKVVYISCGEEHTAVLTKSGGV 263

Query: 242 VSEG-----------MEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVL-GRNGVLLSCG 289
            + G           M  E     + E   + G EV  IACG  H+L     +G++ + G
Sbjct: 264 FTFGAGSCGQLGHDSMNDEVNPRRVLE---LMGSEVTQIACGRQHTLAFVPSSGLIYAFG 320

Query: 290 SNVYGQLG 297
               GQLG
Sbjct: 321 CGARGQLG 328



 Score = 48.9 bits (115), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 35/114 (30%), Positives = 58/114 (50%), Gaps = 18/114 (15%)

Query: 266 VVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDI----NFHPVSISSGL 321
           V ++ACG +HS+ L  +G + +CG N  GQLG E++  G  P  I    + H + ++ G 
Sbjct: 36  VKEVACGGNHSVFLLEDGEVYTCGLNTKGQLGHERE--GNKPEQIGALADQHIIHVACGE 93

Query: 322 GHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPDN---VPLVVEGLEGES 372
            HSLA+ +            + SWG     QLG M  ++   VP +++ L  ++
Sbjct: 94  SHSLALSD---------QGQLFSWGAGSDGQLGLMTTEDSVAVPRLIQKLNQQT 138


>gi|8655683|emb|CAB94882.1| hypothetical protein [Homo sapiens]
          Length = 333

 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 81/293 (27%), Positives = 130/293 (44%), Gaps = 35/293 (11%)

Query: 75  HSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAI 134
           HSL +T  G +W+WGRN + QLG G  +       P+ +EGL    + +A      + A+
Sbjct: 17  HSLLITTEGKLWSWGRNEKGQLGHGDTKRVEA---PRLIEGLSHEVIVSAACGRNHTLAL 73

Query: 135 GDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLF 194
            + GS++ +G++K GQLGLG        P+++    G+ I K++ G   ++     G L+
Sbjct: 74  TETGSVFAFGENKMGQLGLGNQTDAVPSPAQI-MYNGQPITKMACGAEFSMIMDCKGNLY 132

Query: 195 GWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPI 254
            +G    G++G+            N D    +  +      E   + V+  +EK K   I
Sbjct: 133 SFGCPEYGQLGH------------NSDGKFIARAQRIEYDCELVPRRVAIFIEKTKDGQI 180

Query: 255 IWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFHP 314
           +  P +V    V D+ACG +H+LVL     + S G   YG+LG  +Q   M P  +    
Sbjct: 181 LPVPNVV----VRDVACGANHTLVLDSQKRVFSWGFGGYGRLGHAEQKDEMVPRLVKLFD 236

Query: 315 V------SISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPDNV 361
                   I +G   S A+ EV          G+  WG   +S+   M P  V
Sbjct: 237 FPGRGASQIYAGYTCSFAVSEV---------GGLFFWGATNTSRESTMYPKAV 280



 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 56/186 (30%), Positives = 80/186 (43%), Gaps = 31/186 (16%)

Query: 56  PTRVPGLPSDV-TSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVE 114
           P  + GL  +V  S + G  H+LA+T  G+V+A+G N   QLG G      T   P   +
Sbjct: 49  PRLIEGLSHEVIVSAACGRNHTLALTETGSVFAFGENKMGQLGLG----NQTDAVPSPAQ 104

Query: 115 GLDQVNVCAAFASGVVSSAIGD-DGSLWVWGKSKRGQLGL---GKDITEA--------IV 162
            +         A G   S I D  G+L+ +G  + GQLG    GK I  A        +V
Sbjct: 105 IMYNGQPITKMACGAEFSMIMDCKGNLYSFGCPEYGQLGHNSDGKFIARAQRIEYDCELV 164

Query: 163 PSRVEALAGEK-------------IVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGK 209
           P RV A+  EK             +  V+ G  H L      ++F WG+   GR+G+  +
Sbjct: 165 PRRV-AIFIEKTKDGQILPVPNVVVRDVACGANHTLVLDSQKRVFSWGFGGYGRLGHAEQ 223

Query: 210 ALESSP 215
             E  P
Sbjct: 224 KDEMVP 229


>gi|224011731|ref|XP_002295640.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|209583671|gb|ACI64357.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 277

 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 88/309 (28%), Positives = 130/309 (42%), Gaps = 62/309 (20%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPS--DVTSVSAGHYHSLAVTNNGAVW 86
           V S+G G  G LG+     G   D  EPT V  L     +T V+ G YH+ AV +NG ++
Sbjct: 1   VFSWGRGEDGQLGI-----GDTSDQDEPTYVDALRGVGIITHVTCGSYHTAAVASNGDLY 55

Query: 87  AWGRNNEVQLGRGALESRATWNDPKRVE---GLDQVNV-CAAFASGVVSSAIGDDGSLWV 142
            WG     +LG G     +T   P+RVE   GL  V++ C +  + VV+S     G L+ 
Sbjct: 56  TWGGGMYGKLGHGNESGHST---PRRVEALVGLSIVDIACGSRHTAVVTS----KGCLYT 108

Query: 143 WGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADG 202
           WG  + G  G G        P  +E L G+K+V++S    H    T+D + F WG    G
Sbjct: 109 WGDKENGVAGHGDTEGHQYTPKLLERLNGKKVVQLSACGFHTACLTDDHETFAWGEGKFG 168

Query: 203 RIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVE 262
           R+GN                                      G E+  + P + E  +  
Sbjct: 169 RLGN--------------------------------------GTERNCHSPRLIESLI-- 188

Query: 263 GVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFHP----VSIS 318
           G     +ACG  HS V+ R+G + + G   +GQLG   +   + P  +          I+
Sbjct: 189 GKYPCQVACGGFHSAVITRDGKMYTFGGGEHGQLGHADKVNKLKPTLVEALDGVVVKQIT 248

Query: 319 SGLGHSLAI 327
            G  HS+A+
Sbjct: 249 CGWSHSVAL 257



 Score = 65.9 bits (159), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 42/143 (29%), Positives = 70/143 (48%), Gaps = 5/143 (3%)

Query: 51  GDAYEPTRVPGLP-SDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWND 109
           G  Y P  +  L    V  +SA  +H+  +T++   +AWG     +LG G   +    + 
Sbjct: 124 GHQYTPKLLERLNGKKVVQLSACGFHTACLTDDHETFAWGEGKFGRLGNG---TERNCHS 180

Query: 110 PKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEAL 169
           P+ +E L     C     G  S+ I  DG ++ +G  + GQLG   D    + P+ VEAL
Sbjct: 181 PRLIESLIGKYPCQVACGGFHSAVITRDGKMYTFGGGEHGQLGH-ADKVNKLKPTLVEAL 239

Query: 170 AGEKIVKVSFGWGHALAQTEDGK 192
            G  + +++ GW H++A T +G+
Sbjct: 240 DGVVVKQITCGWSHSVALTSEGE 262


>gi|301755552|ref|XP_002913643.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC3-like
           [Ailuropoda melanoleuca]
          Length = 1129

 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 70/248 (28%), Positives = 116/248 (46%), Gaps = 21/248 (8%)

Query: 66  VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAF 125
           +  V+ G  HSLA+++ G +++WG  ++ QLG    E       P+ ++ L+Q  +    
Sbjct: 165 IVHVACGESHSLALSDRGQLFSWGAGSDGQLGLMTTEDSVA--VPRLIQKLNQQTILQVS 222

Query: 126 ASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHAL 185
                  A+  DG  + WGK+  GQLGLGK+      P RV +L G  + +V+ G  H+ 
Sbjct: 223 CGNWHCLALAADGQFFTWGKNSHGQLGLGKEFPSQASPQRVRSLEGIPLAQVAAGGAHSF 282

Query: 186 AQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSE----SDQEISSSTIEKAQKL 241
           A +  G +FGWG +  G++G   +    SP    + R+ +    S  E  ++ + K+  +
Sbjct: 283 ALSLSGAVFGWGMNNAGQLGLSDEEDRESPCHVKLLRTQKVVYISCGEEHTAVLTKSGGV 342

Query: 242 VSEG-----------MEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVL-GRNGVLLSCG 289
            + G           M  E     + E   + G EV  IACG  H+L     +G++ + G
Sbjct: 343 FTFGAGSCGQLGHDSMNDEVNPRRVLE---LMGSEVTQIACGRQHTLAFVPSSGLIYAFG 399

Query: 290 SNVYGQLG 297
               GQLG
Sbjct: 400 CGARGQLG 407



 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 88/312 (28%), Positives = 139/312 (44%), Gaps = 33/312 (10%)

Query: 39  ALGLPTSLTGVGGDAYEPTRVPGLPSD--VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQL 96
           +LG P   T + G   EP +V G  SD  V  V+ G  HS+ +  +G V+  G N + QL
Sbjct: 87  SLGQPGISTNLQGIVAEP-QVCGFISDRSVKEVACGGNHSVFLLEDGEVYTCGLNTKGQL 145

Query: 97  GRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKD 156
           G          N P+++  L   ++         S A+ D G L+ WG    GQLGL   
Sbjct: 146 GH-----EREGNKPEQIGALADQHIVHVACGESHSLALSDRGQLFSWGAGSDGQLGLMTT 200

Query: 157 ITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPL 216
                VP  ++ L  + I++VS G  H LA   DG+ F WG ++ G++G LGK   S   
Sbjct: 201 EDSVAVPRLIQKLNQQTILQVSCGNWHCLALAADGQFFTWGKNSHGQLG-LGKEFPSQAS 259

Query: 217 DSNIDRSSE-------SDQEISSSTIEKAQKLVSEGM----------EKEKYMPIIWEPF 259
              + RS E       +     S  +  +  +   GM          E+++  P   +  
Sbjct: 260 PQRV-RSLEGIPLAQVAAGGAHSFALSLSGAVFGWGMNNAGQLGLSDEEDRESPCHVK-- 316

Query: 260 LVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDI----NFHPV 315
           L+   +VV I+CG +H+ VL ++G + + G+   GQLG +  +  + P  +         
Sbjct: 317 LLRTQKVVYISCGEEHTAVLTKSGGVFTFGAGSCGQLGHDSMNDEVNPRRVLELMGSEVT 376

Query: 316 SISSGLGHSLAI 327
            I+ G  H+LA 
Sbjct: 377 QIACGRQHTLAF 388



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 64/244 (26%), Positives = 103/244 (42%), Gaps = 70/244 (28%)

Query: 136 DDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFG 195
           +DG ++  G + +GQLG  +   E   P ++ ALA + IV V+ G  H+LA ++ G+LF 
Sbjct: 130 EDGEVYTCGLNTKGQLGHER---EGNKPEQIGALADQHIVHVACGESHSLALSDRGQLFS 186

Query: 196 WGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPII 255
           WG  +DG++G +                     E S +     QKL  +           
Sbjct: 187 WGAGSDGQLGLM-------------------TTEDSVAVPRLIQKLNQQ----------- 216

Query: 256 WEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFHPV 315
                     ++ ++CG  H L L  +G   + G N +GQLG  K+    FP   +   V
Sbjct: 217 ---------TILQVSCGNWHCLALAADGQFFTWGKNSHGQLGLGKE----FPSQASPQRV 263

Query: 316 ---------SISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLG------RMGPDN 360
                     +++G  HS A+      +++G   G   WG N + QLG      R  P +
Sbjct: 264 RSLEGIPLAQVAAGGAHSFAL------SLSGAVFG---WGMNNAGQLGLSDEEDRESPCH 314

Query: 361 VPLV 364
           V L+
Sbjct: 315 VKLL 318



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 38/115 (33%), Positives = 60/115 (52%), Gaps = 20/115 (17%)

Query: 266 VVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDI----NFHPVSISSGL 321
           V ++ACG +HS+ L  +G + +CG N  GQLG E++  G  P  I    + H V ++ G 
Sbjct: 115 VKEVACGGNHSVFLLEDGEVYTCGLNTKGQLGHERE--GNKPEQIGALADQHIVHVACGE 172

Query: 322 GHSLAICEVRSSNVTGGARG-IVSWGWNRSSQLGRMGPDN---VPLVVEGLEGES 372
            HSLA+ +          RG + SWG     QLG M  ++   VP +++ L  ++
Sbjct: 173 SHSLALSD----------RGQLFSWGAGSDGQLGLMTTEDSVAVPRLIQKLNQQT 217


>gi|281346734|gb|EFB22318.1| hypothetical protein PANDA_013306 [Ailuropoda melanoleuca]
          Length = 427

 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 82/293 (27%), Positives = 129/293 (44%), Gaps = 35/293 (11%)

Query: 75  HSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAI 134
           HSL +T  G +W+WGRN + QLG G  +       PK +EGL    + +A      + A+
Sbjct: 66  HSLLITTEGKLWSWGRNEKGQLGHGDTKRVEA---PKLIEGLSHEVIVSAACGRNHTLAL 122

Query: 135 GDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLF 194
            + GS+  +G++K GQLGLG        P+++    G+ I K++ G   ++     G L+
Sbjct: 123 TETGSVLAFGENKMGQLGLGNQTDAVPSPAQI-MYNGQPITKMACGAEFSMIMDCKGNLY 181

Query: 195 GWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPI 254
            +G    G++G+            N D    +  +      E   + V+  +EK K   I
Sbjct: 182 SFGCPEYGQLGH------------NSDGKFIARAQRIEYDCELVPRRVAIFIEKTKDGQI 229

Query: 255 IWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFHP 314
           +  P +V    V D+ACG +H+LVL     + S G   YG+LG  +Q   M P  +    
Sbjct: 230 LPVPNVV----VRDVACGANHTLVLDSQKRVFSWGFGGYGRLGHAEQKDEMVPRLVKLFD 285

Query: 315 V------SISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPDNV 361
                   I +G   S A+ EV          G+  WG   +S+   M P  V
Sbjct: 286 FPGRGASQIYAGYTCSFAVSEV---------GGLFFWGATNTSRESTMYPKAV 329



 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 56/186 (30%), Positives = 79/186 (42%), Gaps = 31/186 (16%)

Query: 56  PTRVPGLPSDV-TSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVE 114
           P  + GL  +V  S + G  H+LA+T  G+V A+G N   QLG G      T   P   +
Sbjct: 98  PKLIEGLSHEVIVSAACGRNHTLALTETGSVLAFGENKMGQLGLG----NQTDAVPSPAQ 153

Query: 115 GLDQVNVCAAFASGVVSSAIGD-DGSLWVWGKSKRGQLGL---GKDITEA--------IV 162
            +         A G   S I D  G+L+ +G  + GQLG    GK I  A        +V
Sbjct: 154 IMYNGQPITKMACGAEFSMIMDCKGNLYSFGCPEYGQLGHNSDGKFIARAQRIEYDCELV 213

Query: 163 PSRVEALAGEK-------------IVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGK 209
           P RV A+  EK             +  V+ G  H L      ++F WG+   GR+G+  +
Sbjct: 214 PRRV-AIFIEKTKDGQILPVPNVVVRDVACGANHTLVLDSQKRVFSWGFGGYGRLGHAEQ 272

Query: 210 ALESSP 215
             E  P
Sbjct: 273 KDEMVP 278


>gi|73952755|ref|XP_536367.2| PREDICTED: probable E3 ubiquitin-protein ligase HERC4 isoform 1
           [Canis lupus familiaris]
          Length = 1049

 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 65/245 (26%), Positives = 114/245 (46%), Gaps = 43/245 (17%)

Query: 55  EPTRVPGLPS-DVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRV 113
           +P +V  L + ++ +VS G  H+LA+ + G V+AWG +++ QLG   L S      P+ +
Sbjct: 74  KPEQVVALDAQNIVAVSCGEAHTLALNDKGQVYAWGLDSDGQLG--LLGSEECIRVPRNI 131

Query: 114 EGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEK 173
           + L  + +         S A+     ++ WG++K GQLGLG D  +   P  +++L G  
Sbjct: 132 KSLSDIQIVQVACGYYHSLALSKASEVFCWGQNKYGQLGLGIDCKKQASPQLIKSLLGIP 191

Query: 174 IVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSS 233
            ++V+ G  H+   T  G +FGWG +  G++G          L+                
Sbjct: 192 FMQVAAGGAHSFVLTLSGAIFGWGRNKFGQLG----------LND--------------- 226

Query: 234 TIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVY 293
                        E ++Y+P + +    +  ++V I CG DH+  L + G + + G+  Y
Sbjct: 227 -------------ENDRYVPNLLKSLRTQ--KIVYICCGEDHTAALTKEGGVFTFGAGGY 271

Query: 294 GQLGR 298
           GQLG 
Sbjct: 272 GQLGH 276



 Score = 78.6 bits (192), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 60/192 (31%), Positives = 99/192 (51%), Gaps = 16/192 (8%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVP-GLPS----DVTSVSAGHYHSLAVTNNG 83
           V ++G  S G LGL      +G +  E  RVP  + S     +  V+ G+YHSLA++   
Sbjct: 105 VYAWGLDSDGQLGL------LGSE--ECIRVPRNIKSLSDIQIVQVACGYYHSLALSKAS 156

Query: 84  AVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVW 143
            V+ WG+N   QLG G    +     P+ ++ L  +      A G  S  +   G+++ W
Sbjct: 157 EVFCWGQNKYGQLGLGIDCKKQA--SPQLIKSLLGIPFMQVAAGGAHSFVLTLSGAIFGW 214

Query: 144 GKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGR 203
           G++K GQLGL  D  +  VP+ +++L  +KIV +  G  H  A T++G +F +G    G+
Sbjct: 215 GRNKFGQLGLN-DENDRYVPNLLKSLRTQKIVYICCGEDHTAALTKEGGVFTFGAGGYGQ 273

Query: 204 IGNLGKALESSP 215
           +G+   + E +P
Sbjct: 274 LGHNSTSHEINP 285



 Score = 71.2 bits (173), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 68/273 (24%), Positives = 111/273 (40%), Gaps = 57/273 (20%)

Query: 87  AWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKS 146
            WG  +  QLG G ++      +P++ +      V         +  + DDG+++  G +
Sbjct: 3   CWGNASFGQLGLGGIDEEIVL-EPRKSDFFINKKVRDVGCGLRHTVFVLDDGTVYTCGCN 61

Query: 147 KRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGN 206
             GQLG  K   +   P +V AL  + IV VS G  H LA  + G+++ WG  +DG++G 
Sbjct: 62  DLGQLGHEKSRKK---PEQVVALDAQNIVAVSCGEAHTLALNDKGQVYAWGLDSDGQLGL 118

Query: 207 LGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEV 266
           LG   E   +  NI   S+                                      +++
Sbjct: 119 LGSE-ECIRVPRNIKSLSD--------------------------------------IQI 139

Query: 267 VDIACGFDHSLVLGRNGVLLSCGSNVYGQLG-----REKQDMGMFPVDINFHPVSISSGL 321
           V +ACG+ HSL L +   +   G N YGQLG     +++    +    +    + +++G 
Sbjct: 140 VQVACGYYHSLALSKASEVFCWGQNKYGQLGLGIDCKKQASPQLIKSLLGIPFMQVAAGG 199

Query: 322 GHSLAICEVRSSNVTGGARGIVSWGWNRSSQLG 354
            HS  +          GA  I  WG N+  QLG
Sbjct: 200 AHSFVL-------TLSGA--IFGWGRNKFGQLG 223


>gi|291404281|ref|XP_002718504.1| PREDICTED: hect domain and RLD 4 isoform 1 [Oryctolagus cuniculus]
          Length = 1057

 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 65/245 (26%), Positives = 114/245 (46%), Gaps = 43/245 (17%)

Query: 55  EPTRVPGLPS-DVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRV 113
           +P +V  L + ++ +VS G  H+LA+ + G V+AWG +++ QLG   L S      P+ +
Sbjct: 74  KPEQVVALDAQNIVAVSCGEAHTLALNDKGQVYAWGLDSDGQLG--LLGSEECIRVPRNI 131

Query: 114 EGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEK 173
           + L  + +         S A+     ++ WG++K GQLGLG D  +   P  +++L G  
Sbjct: 132 KSLSDIQIVQVACGYYHSLALSKASEVFCWGQNKYGQLGLGIDCKKQTSPQLIKSLLGIP 191

Query: 174 IVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSS 233
            ++V+ G  H+   T  G +FGWG +  G++G          L+                
Sbjct: 192 FMQVAAGGAHSFVLTLSGAIFGWGRNKFGQLG----------LND--------------- 226

Query: 234 TIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVY 293
                        E ++Y+P + +   +   ++V I CG DH+  L + G + + G+  Y
Sbjct: 227 -------------ENDRYVPNLLKS--LRSQKIVYICCGEDHTAALTKEGGVFTFGAGGY 271

Query: 294 GQLGR 298
           GQLG 
Sbjct: 272 GQLGH 276



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 61/192 (31%), Positives = 100/192 (52%), Gaps = 16/192 (8%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVP-GLPS----DVTSVSAGHYHSLAVTNNG 83
           V ++G  S G LGL      +G +  E  RVP  + S     +  V+ G+YHSLA++   
Sbjct: 105 VYAWGLDSDGQLGL------LGSE--ECIRVPRNIKSLSDIQIVQVACGYYHSLALSKAS 156

Query: 84  AVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVW 143
            V+ WG+N   QLG G    + T   P+ ++ L  +      A G  S  +   G+++ W
Sbjct: 157 EVFCWGQNKYGQLGLGIDCKKQT--SPQLIKSLLGIPFMQVAAGGAHSFVLTLSGAIFGW 214

Query: 144 GKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGR 203
           G++K GQLGL  D  +  VP+ +++L  +KIV +  G  H  A T++G +F +G    G+
Sbjct: 215 GRNKFGQLGLN-DENDRYVPNLLKSLRSQKIVYICCGEDHTAALTKEGGVFTFGAGGYGQ 273

Query: 204 IGNLGKALESSP 215
           +G+   + E +P
Sbjct: 274 LGHNSTSHEINP 285



 Score = 71.2 bits (173), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 68/273 (24%), Positives = 111/273 (40%), Gaps = 57/273 (20%)

Query: 87  AWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKS 146
            WG  +  QLG G ++      +P++ +      V         +  + DDG+++  G +
Sbjct: 3   CWGNASFGQLGLGGIDEEIVL-EPRKSDFFINKKVRDVGCGLRHTVFVLDDGTVYTCGCN 61

Query: 147 KRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGN 206
             GQLG  K   +   P +V AL  + IV VS G  H LA  + G+++ WG  +DG++G 
Sbjct: 62  DLGQLGHEKSRKK---PEQVVALDAQNIVAVSCGEAHTLALNDKGQVYAWGLDSDGQLGL 118

Query: 207 LGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEV 266
           LG   E   +  NI   S+                                      +++
Sbjct: 119 LGSE-ECIRVPRNIKSLSD--------------------------------------IQI 139

Query: 267 VDIACGFDHSLVLGRNGVLLSCGSNVYGQLG-----REKQDMGMFPVDINFHPVSISSGL 321
           V +ACG+ HSL L +   +   G N YGQLG     +++    +    +    + +++G 
Sbjct: 140 VQVACGYYHSLALSKASEVFCWGQNKYGQLGLGIDCKKQTSPQLIKSLLGIPFMQVAAGG 199

Query: 322 GHSLAICEVRSSNVTGGARGIVSWGWNRSSQLG 354
            HS  +          GA  I  WG N+  QLG
Sbjct: 200 AHSFVL-------TLSGA--IFGWGRNKFGQLG 223


>gi|417405688|gb|JAA49548.1| Putative e3 ubiquitin-protein ligase herc4 [Desmodus rotundus]
          Length = 1049

 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 78/316 (24%), Positives = 137/316 (43%), Gaps = 49/316 (15%)

Query: 55  EPTRVPGLPS-DVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRV 113
           +P +V  L + ++ +VS G  H+LA+ + G V+AWG +++ QLG   L S      P+ +
Sbjct: 74  KPEQVVALDAQNIVAVSCGEAHTLALNDKGQVYAWGLDSDGQLG--LLGSEECIRVPRNI 131

Query: 114 EGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEK 173
           + L  + +         S A+     ++ WG++K GQLGLG D  +   P  +++L G  
Sbjct: 132 KSLSDIQIVQVACGYYHSLALSKASEVFSWGQNKYGQLGLGIDCNKQASPQLIKSLTGIP 191

Query: 174 IVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSS 233
            ++V+ G  H+   T  G +FGWG +  G++G          L+                
Sbjct: 192 FMQVAAGGAHSFVLTLSGAIFGWGRNKFGQLG----------LND--------------- 226

Query: 234 TIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVY 293
                        E ++Y+P + +    +  ++V I CG DH+  L + G + + G+  Y
Sbjct: 227 -------------ENDRYVPNLLKSLRTQ--KIVYICCGEDHTAALTKEGGVFTFGAGGY 271

Query: 294 GQLGREKQDMGMFPVDINFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQL 353
           GQLG       + P  +      +   +   +A     +S     +  I S+G   + QL
Sbjct: 272 GQLGHNSTSHEINPRKV----FELMGSIVTQIACGRQHTSAFVPSSGRIYSFGLGGNGQL 327

Query: 354 GRMGPDN--VPLVVEG 367
           G     N   P  V+G
Sbjct: 328 GTGSTSNRKSPFTVKG 343



 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 60/192 (31%), Positives = 101/192 (52%), Gaps = 16/192 (8%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVP-GLPS----DVTSVSAGHYHSLAVTNNG 83
           V ++G  S G LGL      +G +  E  RVP  + S     +  V+ G+YHSLA++   
Sbjct: 105 VYAWGLDSDGQLGL------LGSE--ECIRVPRNIKSLSDIQIVQVACGYYHSLALSKAS 156

Query: 84  AVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVW 143
            V++WG+N   QLG G   ++     P+ ++ L  +      A G  S  +   G+++ W
Sbjct: 157 EVFSWGQNKYGQLGLGIDCNKQA--SPQLIKSLTGIPFMQVAAGGAHSFVLTLSGAIFGW 214

Query: 144 GKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGR 203
           G++K GQLGL  D  +  VP+ +++L  +KIV +  G  H  A T++G +F +G    G+
Sbjct: 215 GRNKFGQLGLN-DENDRYVPNLLKSLRTQKIVYICCGEDHTAALTKEGGVFTFGAGGYGQ 273

Query: 204 IGNLGKALESSP 215
           +G+   + E +P
Sbjct: 274 LGHNSTSHEINP 285



 Score = 72.0 bits (175), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 72/273 (26%), Positives = 111/273 (40%), Gaps = 57/273 (20%)

Query: 87  AWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKS 146
            WG  +  QLG G ++      +P++ +      V         +  + DDG+++  G +
Sbjct: 3   CWGNASFGQLGLGGIDEEIVL-EPRKSDFFINKKVRDVGCGLRHTVFVLDDGTVYTCGCN 61

Query: 147 KRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGN 206
             GQLG  K   +   P +V AL  + IV VS G  H LA  + G+++ WG  +DG++G 
Sbjct: 62  DLGQLGHEKSRKK---PEQVVALDAQNIVAVSCGEAHTLALNDKGQVYAWGLDSDGQLGL 118

Query: 207 LGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEV 266
           LG   E   +  NI   S+                                      +++
Sbjct: 119 LGSE-ECIRVPRNIKSLSD--------------------------------------IQI 139

Query: 267 VDIACGFDHSLVLGRNGVLLSCGSNVYGQLGR----EKQDMGMFPVDINFHP-VSISSGL 321
           V +ACG+ HSL L +   + S G N YGQLG      KQ        +   P + +++G 
Sbjct: 140 VQVACGYYHSLALSKASEVFSWGQNKYGQLGLGIDCNKQASPQLIKSLTGIPFMQVAAGG 199

Query: 322 GHSLAICEVRSSNVTGGARGIVSWGWNRSSQLG 354
            HS  +          GA  I  WG N+  QLG
Sbjct: 200 AHSFVL-------TLSGA--IFGWGRNKFGQLG 223


>gi|392340833|ref|XP_001072061.3| PREDICTED: LOW QUALITY PROTEIN: protein RCC2, partial [Rattus
           norvegicus]
 gi|392348476|ref|XP_216557.6| PREDICTED: LOW QUALITY PROTEIN: protein RCC2, partial [Rattus
           norvegicus]
          Length = 500

 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 81/293 (27%), Positives = 128/293 (43%), Gaps = 35/293 (11%)

Query: 75  HSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAI 134
           HSL +T  G +W+WGRN + QLG G  +       P+ +E L    +  A      + A+
Sbjct: 139 HSLLITTEGKLWSWGRNEKGQLGHGDTKRVEA---PRLIEALSHEAIVLAACGRNHTLAL 195

Query: 135 GDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLF 194
            D GS++ +G++K GQLGLG        P+++    G+ I K++ G   ++     G L+
Sbjct: 196 TDTGSVFAFGENKMGQLGLGNQTDAVPSPAQI-MYNGQPITKMACGAEFSMLMDCKGNLY 254

Query: 195 GWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPI 254
            +G    G++G+            N D    +  +      E   + V+  +EK K   I
Sbjct: 255 SFGCPEYGQLGH------------NSDGKFIARAQRIEYDCELVPRRVAIFIEKTKDGQI 302

Query: 255 IWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFH- 313
           +  P +V    V D+ACG +H+LVL     + S G   YG+LG  +Q   M P  +    
Sbjct: 303 LPVPNVV----VRDVACGANHTLVLDSQKRVFSWGFGGYGRLGHAEQKDEMVPRLVKLFD 358

Query: 314 -----PVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPDNV 361
                   I +G   S A+ EV          G+  WG   +S+   M P  V
Sbjct: 359 FPGRGATQIYAGYTCSFAVSEV---------GGLFFWGATNTSRESTMYPKAV 402



 Score = 49.3 bits (116), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 53/186 (28%), Positives = 80/186 (43%), Gaps = 31/186 (16%)

Query: 56  PTRVPGLPSDVTSVSA-GHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVE 114
           P  +  L  +   ++A G  H+LA+T+ G+V+A+G N   QLG G      T   P   +
Sbjct: 171 PRLIEALSHEAIVLAACGRNHTLALTDTGSVFAFGENKMGQLGLG----NQTDAVPSPAQ 226

Query: 115 GLDQVNVCAAFASGVVSSAIGD-DGSLWVWGKSKRGQLGL---GKDITEA--------IV 162
            +         A G   S + D  G+L+ +G  + GQLG    GK I  A        +V
Sbjct: 227 IMYNGQPITKMACGAEFSMLMDCKGNLYSFGCPEYGQLGHNSDGKFIARAQRIEYDCELV 286

Query: 163 PSRVEALAGEK-------------IVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGK 209
           P RV A+  EK             +  V+ G  H L      ++F WG+   GR+G+  +
Sbjct: 287 PRRV-AIFIEKTKDGQILPVPNVVVRDVACGANHTLVLDSQKRVFSWGFGGYGRLGHAEQ 345

Query: 210 ALESSP 215
             E  P
Sbjct: 346 KDEMVP 351


>gi|115304951|gb|AAI23843.1| Hect domain and RLD 4 [Bos taurus]
          Length = 853

 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 64/245 (26%), Positives = 114/245 (46%), Gaps = 43/245 (17%)

Query: 55  EPTRVPGLPS-DVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRV 113
           +P +V  L + ++ +VS G  H+LA+ + G V+AWG +++ QLG   L S      P+ +
Sbjct: 74  KPEQVVALDAQNIVAVSCGEAHTLALNDKGQVYAWGLDSDGQLG--LLGSEECIRVPRNI 131

Query: 114 EGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEK 173
           + L  + +         S A+     ++ WG++K GQLGLG D  +   P  +++L G  
Sbjct: 132 KSLSDIQIVQVACGYYHSLALSKASEVFCWGQNKYGQLGLGIDCKKQASPQLIKSLLGIP 191

Query: 174 IVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSS 233
            ++++ G  H+   T  G +FGWG +  G++G          L+                
Sbjct: 192 FMQIAAGGAHSFVLTLSGAIFGWGRNKFGQLG----------LND--------------- 226

Query: 234 TIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVY 293
                        E ++Y+P + +    +  ++V I CG DH+  L + G + + G+  Y
Sbjct: 227 -------------ENDRYVPNLLKSLRTQ--KIVYICCGEDHTAALTKEGGVFTFGAGGY 271

Query: 294 GQLGR 298
           GQLG 
Sbjct: 272 GQLGH 276



 Score = 77.8 bits (190), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 60/192 (31%), Positives = 99/192 (51%), Gaps = 16/192 (8%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVP-GLPS----DVTSVSAGHYHSLAVTNNG 83
           V ++G  S G LGL      +G +  E  RVP  + S     +  V+ G+YHSLA++   
Sbjct: 105 VYAWGLDSDGQLGL------LGSE--ECIRVPRNIKSLSDIQIVQVACGYYHSLALSKAS 156

Query: 84  AVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVW 143
            V+ WG+N   QLG G    +     P+ ++ L  +      A G  S  +   G+++ W
Sbjct: 157 EVFCWGQNKYGQLGLGIDCKKQA--SPQLIKSLLGIPFMQIAAGGAHSFVLTLSGAIFGW 214

Query: 144 GKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGR 203
           G++K GQLGL  D  +  VP+ +++L  +KIV +  G  H  A T++G +F +G    G+
Sbjct: 215 GRNKFGQLGLN-DENDRYVPNLLKSLRTQKIVYICCGEDHTAALTKEGGVFTFGAGGYGQ 273

Query: 204 IGNLGKALESSP 215
           +G+   + E +P
Sbjct: 274 LGHNSTSHEINP 285



 Score = 72.0 bits (175), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 69/275 (25%), Positives = 112/275 (40%), Gaps = 57/275 (20%)

Query: 85  VWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWG 144
           +  WG  +  QLG G ++      +P++ +      V         +  + DDG+++  G
Sbjct: 1   MLCWGNASFGQLGLGGIDEEIVL-EPRKSDFFINKKVRDVGCGLRHTVFVLDDGTVYTCG 59

Query: 145 KSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRI 204
            +  GQLG  K   +   P +V AL  + IV VS G  H LA  + G+++ WG  +DG++
Sbjct: 60  CNDLGQLGHEKSRKK---PEQVVALDAQNIVAVSCGEAHTLALNDKGQVYAWGLDSDGQL 116

Query: 205 GNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGV 264
           G LG   E   +  NI   S+                                      +
Sbjct: 117 GLLGSE-ECIRVPRNIKSLSD--------------------------------------I 137

Query: 265 EVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLG-----REKQDMGMFPVDINFHPVSISS 319
           ++V +ACG+ HSL L +   +   G N YGQLG     +++    +    +    + I++
Sbjct: 138 QIVQVACGYYHSLALSKASEVFCWGQNKYGQLGLGIDCKKQASPQLIKSLLGIPFMQIAA 197

Query: 320 GLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLG 354
           G  HS  +          GA  I  WG N+  QLG
Sbjct: 198 GGAHSFVL-------TLSGA--IFGWGRNKFGQLG 223


>gi|73952739|ref|XP_849808.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC4 isoform 2
           [Canis lupus familiaris]
          Length = 1057

 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 65/245 (26%), Positives = 114/245 (46%), Gaps = 43/245 (17%)

Query: 55  EPTRVPGLPS-DVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRV 113
           +P +V  L + ++ +VS G  H+LA+ + G V+AWG +++ QLG   L S      P+ +
Sbjct: 74  KPEQVVALDAQNIVAVSCGEAHTLALNDKGQVYAWGLDSDGQLG--LLGSEECIRVPRNI 131

Query: 114 EGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEK 173
           + L  + +         S A+     ++ WG++K GQLGLG D  +   P  +++L G  
Sbjct: 132 KSLSDIQIVQVACGYYHSLALSKASEVFCWGQNKYGQLGLGIDCKKQASPQLIKSLLGIP 191

Query: 174 IVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSS 233
            ++V+ G  H+   T  G +FGWG +  G++G          L+                
Sbjct: 192 FMQVAAGGAHSFVLTLSGAIFGWGRNKFGQLG----------LND--------------- 226

Query: 234 TIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVY 293
                        E ++Y+P + +    +  ++V I CG DH+  L + G + + G+  Y
Sbjct: 227 -------------ENDRYVPNLLKSLRTQ--KIVYICCGEDHTAALTKEGGVFTFGAGGY 271

Query: 294 GQLGR 298
           GQLG 
Sbjct: 272 GQLGH 276



 Score = 78.2 bits (191), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 60/192 (31%), Positives = 99/192 (51%), Gaps = 16/192 (8%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVP-GLPS----DVTSVSAGHYHSLAVTNNG 83
           V ++G  S G LGL      +G +  E  RVP  + S     +  V+ G+YHSLA++   
Sbjct: 105 VYAWGLDSDGQLGL------LGSE--ECIRVPRNIKSLSDIQIVQVACGYYHSLALSKAS 156

Query: 84  AVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVW 143
            V+ WG+N   QLG G    +     P+ ++ L  +      A G  S  +   G+++ W
Sbjct: 157 EVFCWGQNKYGQLGLGIDCKKQA--SPQLIKSLLGIPFMQVAAGGAHSFVLTLSGAIFGW 214

Query: 144 GKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGR 203
           G++K GQLGL  D  +  VP+ +++L  +KIV +  G  H  A T++G +F +G    G+
Sbjct: 215 GRNKFGQLGLN-DENDRYVPNLLKSLRTQKIVYICCGEDHTAALTKEGGVFTFGAGGYGQ 273

Query: 204 IGNLGKALESSP 215
           +G+   + E +P
Sbjct: 274 LGHNSTSHEINP 285



 Score = 71.2 bits (173), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 68/273 (24%), Positives = 111/273 (40%), Gaps = 57/273 (20%)

Query: 87  AWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKS 146
            WG  +  QLG G ++      +P++ +      V         +  + DDG+++  G +
Sbjct: 3   CWGNASFGQLGLGGIDEEIVL-EPRKSDFFINKKVRDVGCGLRHTVFVLDDGTVYTCGCN 61

Query: 147 KRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGN 206
             GQLG  K   +   P +V AL  + IV VS G  H LA  + G+++ WG  +DG++G 
Sbjct: 62  DLGQLGHEKSRKK---PEQVVALDAQNIVAVSCGEAHTLALNDKGQVYAWGLDSDGQLGL 118

Query: 207 LGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEV 266
           LG   E   +  NI   S+                                      +++
Sbjct: 119 LGSE-ECIRVPRNIKSLSD--------------------------------------IQI 139

Query: 267 VDIACGFDHSLVLGRNGVLLSCGSNVYGQLG-----REKQDMGMFPVDINFHPVSISSGL 321
           V +ACG+ HSL L +   +   G N YGQLG     +++    +    +    + +++G 
Sbjct: 140 VQVACGYYHSLALSKASEVFCWGQNKYGQLGLGIDCKKQASPQLIKSLLGIPFMQVAAGG 199

Query: 322 GHSLAICEVRSSNVTGGARGIVSWGWNRSSQLG 354
            HS  +          GA  I  WG N+  QLG
Sbjct: 200 AHSFVL-------TLSGA--IFGWGRNKFGQLG 223


>gi|255563857|ref|XP_002522929.1| uvb-resistance protein uvr8, putative [Ricinus communis]
 gi|223537856|gb|EEF39472.1| uvb-resistance protein uvr8, putative [Ricinus communis]
          Length = 437

 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 85/295 (28%), Positives = 131/295 (44%), Gaps = 54/295 (18%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVP---GLPSDVTSVSAGHYHSLAVTNNGAV 85
           V S+G    G LGL T+      D+  P ++    G+P  +  V+AG  H+ AVT +G +
Sbjct: 140 VQSWGRNQNGQLGLGTTE-----DSLVPQKIQAFQGVP--IKMVAAGAEHTAAVTEDGEL 192

Query: 86  WAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGK 145
           + WG      LG G  + R          G   V V   +   +   ++   G L+ +G 
Sbjct: 193 YGWGWGRYGNLGLGDRKDRLVPEKVSLPHGEKMVMVACGWRHTI---SVSSSGGLYTYGW 249

Query: 146 SKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIG 205
           SK GQLG G D  + ++P ++EAL G  I ++S GW H +A T DGKL+GWG++  G++G
Sbjct: 250 SKYGQLGHG-DYADHLIPHQLEALQGSFISQISGGWRHTMAVTSDGKLYGWGWNKFGQVG 308

Query: 206 NLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVE 265
                     +  N+DRSS    ++               +E+                +
Sbjct: 309 ----------VGDNVDRSSPVQVKLP--------------LEQ----------------K 328

Query: 266 VVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFHPVSISSG 320
           V+ I+CG+ H+L +     + S G    GQLG  +      PV I    V  S G
Sbjct: 329 VILISCGWRHTLAVTERQNVFSWGRGTNGQLGNGECTDRNVPVIIKALSVDGSCG 383



 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 96/361 (26%), Positives = 146/361 (40%), Gaps = 110/361 (30%)

Query: 66  VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNV-CAA 124
           V  +SAG  HS+A+ +   V  WGR  + QLG G  + R +      +EGL+ ++V C A
Sbjct: 16  VLLISAGASHSVALLSGNVVCTWGRGEDGQLGHGDAQDRLSPTILSTLEGLEIISVICGA 75

Query: 125 FASGVVSS-----------------------------------------AIGD------- 136
             +   S                                          A GD       
Sbjct: 76  DHTIAYSESHTDVYSWGWGDFGRLGHGNSSDLFTPQPIRQLHGLKIKQIACGDSHCLAVT 135

Query: 137 -DGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFG 195
            +G +  WG+++ GQLGLG    +++VP +++A  G  I  V+ G  H  A TEDG+L+G
Sbjct: 136 MEGQVQSWGRNQNGQLGLGT-TEDSLVPQKIQAFQGVPIKMVAAGAEHTAAVTEDGELYG 194

Query: 196 WGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPII 255
           WG+   GR GNLG                           ++  +LV E +         
Sbjct: 195 WGW---GRYGNLGLG-------------------------DRKDRLVPEKVS-------- 218

Query: 256 WEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFHPV 315
               L  G ++V +ACG+ H++ +  +G L + G + YGQLG       + P  +     
Sbjct: 219 ----LPHGEKMVMVACGWRHTISVSSSGGLYTYGWSKYGQLGHGDYADHLIPHQLEALQG 274

Query: 316 S----ISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLG------RMGPDNVPLVV 365
           S    IS G  H++A        VT   + +  WGWN+  Q+G      R  P  V L +
Sbjct: 275 SFISQISGGWRHTMA--------VTSDGK-LYGWGWNKFGQVGVGDNVDRSSPVQVKLPL 325

Query: 366 E 366
           E
Sbjct: 326 E 326


>gi|326913438|ref|XP_003203045.1| PREDICTED: hypothetical protein LOC100541592 [Meleagris gallopavo]
          Length = 1302

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 83/293 (28%), Positives = 141/293 (48%), Gaps = 33/293 (11%)

Query: 27  TAVVS-------FGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSA-GHYHSLA 78
           TAVV+       FG    G LGL     G     ++PT V  L  + T ++  G  H+L 
Sbjct: 64  TAVVTGNGKLYMFGSNDWGQLGL-----GSKNTVHKPTCVKALKPEKTKLAVCGRNHTLV 118

Query: 79  VTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDG 138
            T NG ++A G N E QLG G  E R T++         ++   A  A    S+A+ +DG
Sbjct: 119 YTENGNMYAAGGNGEGQLGLGDTEERTTFHLISFFTNQHKIKQLA--AGSYTSAAVTEDG 176

Query: 139 SLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGY 198
            L+VWG +  GQ+GL  D T   VP +V+   G+ I  +S G+ H+   T DG+L+ +G 
Sbjct: 177 QLFVWGDNSEGQIGLA-DKTYVSVPCQVD--VGKPISSISCGYYHSAFITGDGELYTFGE 233

Query: 199 SADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGME--------KEK 250
             +G++G L + L++S +   +    E   +++    E    L   G+         +  
Sbjct: 234 PENGKLGLLPEQLKNSRVPQPVLGIMEKVNKVACGG-EHTVVLTETGVYTFGLGQYGQLG 292

Query: 251 YMPIIWEPFLVEGV------EVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLG 297
           +  ++++  + + V      ++ +I CG  H+ V+  NG++ + G   +G+LG
Sbjct: 293 HGTLLFKTSVPKSVKHLRKCKIRNITCGESHTAVIAENGLMFTFGDGRHGKLG 345



 Score = 75.9 bits (185), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 73/241 (30%), Positives = 117/241 (48%), Gaps = 17/241 (7%)

Query: 69  VSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASG 128
           +S G  H+  VT NG ++ +G N+  QLG G   S+ T + P  V+ L       A    
Sbjct: 57  ISCGDEHTAVVTGNGKLYMFGSNDWGQLGLG---SKNTVHKPTCVKALKPEKTKLAVCGR 113

Query: 129 VVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGE-KIVKVSFGWGHALAQ 187
             +    ++G+++  G +  GQLGLG D  E      +     + KI +++ G   + A 
Sbjct: 114 NHTLVYTENGNMYAAGGNGEGQLGLG-DTEERTTFHLISFFTNQHKIKQLAAGSYTSAAV 172

Query: 188 TEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDR--SSESDQEISSSTIEKAQKLVSEG 245
           TEDG+LF WG +++G+IG   K   S P   ++ +  SS S     S+ I    +L + G
Sbjct: 173 TEDGQLFVWGDNSEGQIGLADKTYVSVPCQVDVGKPISSISCGYYHSAFITGDGELYTFG 232

Query: 246 MEKEKYMPIIWE-------PFLVEGV--EVVDIACGFDHSLVLGRNGVLLSCGSNVYGQL 296
             +   + ++ E       P  V G+  +V  +ACG +H++VL   GV  + G   YGQL
Sbjct: 233 EPENGKLGLLPEQLKNSRVPQPVLGIMEKVNKVACGGEHTVVLTETGV-YTFGLGQYGQL 291

Query: 297 G 297
           G
Sbjct: 292 G 292



 Score = 57.8 bits (138), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 54/184 (29%), Positives = 88/184 (47%), Gaps = 16/184 (8%)

Query: 32  FGDGSQGALGLPTSLTGVGGDAYEPTRVP-GLPSDVTSVSAGHYHSLAVTNNGAVWAWGR 90
           +GD S+G +GL             P +V  G P  ++S+S G+YHS  +T +G ++ +G 
Sbjct: 181 WGDNSEGQIGLADKTY-----VSVPCQVDVGKP--ISSISCGYYHSAFITGDGELYTFGE 233

Query: 91  NNEVQLGRGALESRATWNDPKRVEG-LDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRG 149
               +LG    E       P+ V G +++VN     A G   + +  +  ++ +G  + G
Sbjct: 234 PENGKLGL-LPEQLKNSRVPQPVLGIMEKVN---KVACGGEHTVVLTETGVYTFGLGQYG 289

Query: 150 QLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGK 209
           QLG G  + +  VP  V+ L   KI  ++ G  H     E+G +F +G   DGR G LG 
Sbjct: 290 QLGHGTLLFKTSVPKSVKHLRKCKIRNITCGESHTAVIAENGLMFTFG---DGRHGKLGL 346

Query: 210 ALES 213
             E+
Sbjct: 347 GEEN 350


>gi|29789090|ref|NP_061185.1| protein RCC2 [Homo sapiens]
 gi|209969703|ref|NP_001129676.1| protein RCC2 [Homo sapiens]
 gi|71152033|sp|Q9P258.2|RCC2_HUMAN RecName: Full=Protein RCC2; AltName: Full=RCC1-like protein TD-60;
           AltName: Full=Telophase disk protein of 60 kDa
 gi|27526613|emb|CAD13148.1| RCC1-like protein [Homo sapiens]
 gi|31753208|gb|AAH53908.1| RCC2 protein [Homo sapiens]
 gi|55250899|gb|AAH42141.1| Regulator of chromosome condensation 2 [Homo sapiens]
 gi|119615244|gb|EAW94838.1| regulator of chromosome condensation 2, isoform CRA_a [Homo
           sapiens]
 gi|119615245|gb|EAW94839.1| regulator of chromosome condensation 2, isoform CRA_a [Homo
           sapiens]
 gi|168270564|dbj|BAG10075.1| regulator of chromosome condensation 2 [synthetic construct]
 gi|410215858|gb|JAA05148.1| regulator of chromosome condensation 2 [Pan troglodytes]
 gi|410262104|gb|JAA19018.1| regulator of chromosome condensation 2 [Pan troglodytes]
 gi|410298210|gb|JAA27705.1| regulator of chromosome condensation 2 [Pan troglodytes]
 gi|410341591|gb|JAA39742.1| regulator of chromosome condensation 2 [Pan troglodytes]
          Length = 522

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 81/293 (27%), Positives = 130/293 (44%), Gaps = 35/293 (11%)

Query: 75  HSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAI 134
           HSL +T  G +W+WGRN + QLG G  +       P+ +EGL    + +A      + A+
Sbjct: 161 HSLLITTEGKLWSWGRNEKGQLGHGDTKRVEA---PRLIEGLSHEVIVSAACGRNHTLAL 217

Query: 135 GDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLF 194
            + GS++ +G++K GQLGLG        P+++    G+ I K++ G   ++     G L+
Sbjct: 218 TETGSVFAFGENKMGQLGLGNQTDAVPSPAQI-MYNGQPITKMACGAEFSMIMDCKGNLY 276

Query: 195 GWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPI 254
            +G    G++G+            N D    +  +      E   + V+  +EK K   I
Sbjct: 277 SFGCPEYGQLGH------------NSDGKFIARAQRIEYDCELVPRRVAIFIEKTKDGQI 324

Query: 255 IWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFHP 314
           +  P +V    V D+ACG +H+LVL     + S G   YG+LG  +Q   M P  +    
Sbjct: 325 LPVPNVV----VRDVACGANHTLVLDSQKRVFSWGFGGYGRLGHAEQKDEMVPRLVKLFD 380

Query: 315 V------SISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPDNV 361
                   I +G   S A+ EV          G+  WG   +S+   M P  V
Sbjct: 381 FPGRGASQIYAGYTCSFAVSEV---------GGLFFWGATNTSRESTMYPKAV 424



 Score = 52.8 bits (125), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 56/186 (30%), Positives = 80/186 (43%), Gaps = 31/186 (16%)

Query: 56  PTRVPGLPSDV-TSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVE 114
           P  + GL  +V  S + G  H+LA+T  G+V+A+G N   QLG G      T   P   +
Sbjct: 193 PRLIEGLSHEVIVSAACGRNHTLALTETGSVFAFGENKMGQLGLG----NQTDAVPSPAQ 248

Query: 115 GLDQVNVCAAFASGVVSSAIGD-DGSLWVWGKSKRGQLGL---GKDITEA--------IV 162
            +         A G   S I D  G+L+ +G  + GQLG    GK I  A        +V
Sbjct: 249 IMYNGQPITKMACGAEFSMIMDCKGNLYSFGCPEYGQLGHNSDGKFIARAQRIEYDCELV 308

Query: 163 PSRVEALAGEK-------------IVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGK 209
           P RV A+  EK             +  V+ G  H L      ++F WG+   GR+G+  +
Sbjct: 309 PRRV-AIFIEKTKDGQILPVPNVVVRDVACGANHTLVLDSQKRVFSWGFGGYGRLGHAEQ 367

Query: 210 ALESSP 215
             E  P
Sbjct: 368 KDEMVP 373


>gi|417402228|gb|JAA47967.1| Hypothetical protein [Desmodus rotundus]
          Length = 520

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 81/293 (27%), Positives = 130/293 (44%), Gaps = 35/293 (11%)

Query: 75  HSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAI 134
           HSL +T  G +W+WGRN + QLG G  +       P+ +EGL    + +A      + A+
Sbjct: 159 HSLLITTEGKLWSWGRNEKGQLGHGDTKRVEA---PRLIEGLSHEVIVSAACGRNHTLAL 215

Query: 135 GDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLF 194
            + GS++ +G++K GQLGLG        P+++    G+ I K++ G   ++     G L+
Sbjct: 216 TETGSVFAFGENKMGQLGLGNQTDAVPSPAQI-MYNGQPITKMACGAEFSMIMDCKGNLY 274

Query: 195 GWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPI 254
            +G    G++G+            N D    +  +      E   + V+  +EK K   I
Sbjct: 275 SFGCPEYGQLGH------------NSDGKFIARAQRIEYDCELVPRRVAIFIEKTKDGQI 322

Query: 255 IWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFHP 314
           +  P +V    V D+ACG +H+LVL     + S G   YG+LG  +Q   M P  +    
Sbjct: 323 LPVPNVV----VRDVACGANHTLVLDSQKRVFSWGFGGYGRLGHAEQKDEMVPRLVKLFD 378

Query: 315 V------SISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPDNV 361
                   I +G   S A+ EV          G+  WG   +S+   M P  V
Sbjct: 379 FPGRGASQIYAGYTCSFAVSEV---------GGLFFWGATNTSRESTMYPKAV 422



 Score = 52.4 bits (124), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 56/186 (30%), Positives = 80/186 (43%), Gaps = 31/186 (16%)

Query: 56  PTRVPGLPSDV-TSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVE 114
           P  + GL  +V  S + G  H+LA+T  G+V+A+G N   QLG G      T   P   +
Sbjct: 191 PRLIEGLSHEVIVSAACGRNHTLALTETGSVFAFGENKMGQLGLG----NQTDAVPSPAQ 246

Query: 115 GLDQVNVCAAFASGVVSSAIGD-DGSLWVWGKSKRGQLGL---GKDITEA--------IV 162
            +         A G   S I D  G+L+ +G  + GQLG    GK I  A        +V
Sbjct: 247 IMYNGQPITKMACGAEFSMIMDCKGNLYSFGCPEYGQLGHNSDGKFIARAQRIEYDCELV 306

Query: 163 PSRVEALAGEK-------------IVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGK 209
           P RV A+  EK             +  V+ G  H L      ++F WG+   GR+G+  +
Sbjct: 307 PRRV-AIFIEKTKDGQILPVPNVVVRDVACGANHTLVLDSQKRVFSWGFGGYGRLGHAEQ 365

Query: 210 ALESSP 215
             E  P
Sbjct: 366 KDEMVP 371


>gi|334330728|ref|XP_001378629.2| PREDICTED: RCC1 and BTB domain-containing protein 1 [Monodelphis
           domestica]
          Length = 531

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 54/162 (33%), Positives = 91/162 (56%), Gaps = 5/162 (3%)

Query: 62  LPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNV 121
           L   V  V+ G +HS+A+  +G V+AWG NN  Q+G G+  ++ T   P++V     +  
Sbjct: 126 LIKQVIEVACGSHHSMALAADGEVYAWGYNNCGQVGSGSTANQPT---PRKVTNCLHIKR 182

Query: 122 CAAFASGVVSS-AIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFG 180
             + A G  SS A+ D+G ++ WG +  GQLGLG +  + + P RV AL    ++++  G
Sbjct: 183 VVSIACGQTSSMAVLDNGEVYGWGYNGNGQLGLGNNGNQ-LTPCRVAALHSVCVLQIVCG 241

Query: 181 WGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDR 222
           + H LA T++G L+ WG +  G++G   K+   SP    +++
Sbjct: 242 YAHTLALTDEGLLYAWGANTYGQLGTGNKSNLLSPAQIMVEK 283



 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 72/295 (24%), Positives = 114/295 (38%), Gaps = 71/295 (24%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLP-SDVTSVSAGH-YHSLAVTNNGAVW 86
           V  FG      LG     TG       P ++  L    + S+S G   H L  T +G V+
Sbjct: 43  VFVFGLNCSNCLG-----TGDNQSTIVPKKLEALCGKKIKSLSYGSGPHVLLSTEDGMVY 97

Query: 87  AWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVV---------SSAIGDD 137
           AWG N   QLG G              +G+  + VC       V         S A+  D
Sbjct: 98  AWGHNGYSQLGNGTTN-----------QGIAPIQVCTNLLIKQVIEVACGSHHSMALAAD 146

Query: 138 GSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWG 197
           G ++ WG +  GQ+G G    +         L  +++V ++ G   ++A  ++G+++GWG
Sbjct: 147 GEVYAWGYNNCGQVGSGSTANQPTPRKVTNCLHIKRVVSIACGQTSSMAVLDNGEVYGWG 206

Query: 198 YSADGR--IGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPII 255
           Y+ +G+  +GN G  L    + +                                     
Sbjct: 207 YNGNGQLGLGNNGNQLTPCRVAA------------------------------------- 229

Query: 256 WEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDI 310
                +  V V+ I CG+ H+L L   G+L + G+N YGQLG   +   + P  I
Sbjct: 230 -----LHSVCVLQIVCGYAHTLALTDEGLLYAWGANTYGQLGTGNKSNLLSPAQI 279



 Score = 61.6 bits (148), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 65/252 (25%), Positives = 108/252 (42%), Gaps = 59/252 (23%)

Query: 110 PKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEAL 169
           P+ +  + +  V    A+  +     D+  ++V+G +    LG G D    IVP ++EAL
Sbjct: 15  PQEIASIRKACVFGTSANEAIYVTHNDE--VFVFGLNCSNCLGTG-DNQSTIVPKKLEAL 71

Query: 170 AGEKIVKVSFGWG-HALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQ 228
            G+KI  +S+G G H L  TEDG ++ WG++   ++GN                      
Sbjct: 72  CGKKIKSLSYGSGPHVLLSTEDGMVYAWGHNGYSQLGN---------------------- 109

Query: 229 EISSSTIEKAQKLVSEGMEKEKYMPI-IWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLS 287
                           G   +   PI +    L++  +V+++ACG  HS+ L  +G + +
Sbjct: 110 ----------------GTTNQGIAPIQVCTNLLIK--QVIEVACGSHHSMALAADGEVYA 151

Query: 288 CGSNVYGQLGREKQDMGMFPVDIN--FH---PVSISSGLGHSLAICEVRSSNVTGGARGI 342
            G N  GQ+G         P  +    H    VSI+ G   S+A+  + +  V G     
Sbjct: 152 WGYNNCGQVGSGSTANQPTPRKVTNCLHIKRVVSIACGQTSSMAV--LDNGEVYG----- 204

Query: 343 VSWGWNRSSQLG 354
             WG+N + QLG
Sbjct: 205 --WGYNGNGQLG 214


>gi|395521017|ref|XP_003764618.1| PREDICTED: RCC1 and BTB domain-containing protein 1 [Sarcophilus
           harrisii]
          Length = 531

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 54/162 (33%), Positives = 91/162 (56%), Gaps = 5/162 (3%)

Query: 62  LPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNV 121
           L   V  V+ G +HS+A+  +G V+AWG NN  Q+G G+  ++ T   P++V     +  
Sbjct: 126 LIKQVIEVACGSHHSMALAADGEVYAWGYNNCGQVGSGSTANQPT---PRKVTNCLHIKR 182

Query: 122 CAAFASGVVSS-AIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFG 180
             + A G  SS A+ D+G ++ WG +  GQLGLG +  + + P RV AL    ++++  G
Sbjct: 183 VVSIACGQTSSMAVLDNGEVYGWGYNGNGQLGLGNNGNQ-LTPCRVAALHSVCVLQIVCG 241

Query: 181 WGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDR 222
           + H LA T++G L+ WG +  G++G   K+   SP    +++
Sbjct: 242 YAHTLALTDEGLLYAWGANTYGQLGTGNKSNLLSPAQIMVEK 283



 Score = 77.8 bits (190), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 72/295 (24%), Positives = 114/295 (38%), Gaps = 71/295 (24%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLP-SDVTSVSAGH-YHSLAVTNNGAVW 86
           V  FG      LG     TG       P ++  L    + S+S G   H L  T +G V+
Sbjct: 43  VFVFGLNCSNCLG-----TGDNQSTIVPKKLEALCGKKIKSLSYGSGPHVLLSTEDGVVY 97

Query: 87  AWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVV---------SSAIGDD 137
           AWG N   QLG G              +G+  + VC       V         S A+  D
Sbjct: 98  AWGHNGYSQLGNGTTN-----------QGIAPIQVCTNLLIKQVIEVACGSHHSMALAAD 146

Query: 138 GSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWG 197
           G ++ WG +  GQ+G G    +         L  +++V ++ G   ++A  ++G+++GWG
Sbjct: 147 GEVYAWGYNNCGQVGSGSTANQPTPRKVTNCLHIKRVVSIACGQTSSMAVLDNGEVYGWG 206

Query: 198 YSADGR--IGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPII 255
           Y+ +G+  +GN G  L    + +                                     
Sbjct: 207 YNGNGQLGLGNNGNQLTPCRVAA------------------------------------- 229

Query: 256 WEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDI 310
                +  V V+ I CG+ H+L L   G+L + G+N YGQLG   +   + P  I
Sbjct: 230 -----LHSVCVLQIVCGYAHTLALTDEGLLYAWGANTYGQLGTGNKSNLLSPAQI 279



 Score = 61.2 bits (147), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 65/252 (25%), Positives = 108/252 (42%), Gaps = 59/252 (23%)

Query: 110 PKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEAL 169
           P+ +  + +  V    A+  +     D+  ++V+G +    LG G D    IVP ++EAL
Sbjct: 15  PQEIASIRKACVFGTSANEAIYVTHSDE--VFVFGLNCSNCLGTG-DNQSTIVPKKLEAL 71

Query: 170 AGEKIVKVSFGWG-HALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQ 228
            G+KI  +S+G G H L  TEDG ++ WG++   ++GN                      
Sbjct: 72  CGKKIKSLSYGSGPHVLLSTEDGVVYAWGHNGYSQLGN---------------------- 109

Query: 229 EISSSTIEKAQKLVSEGMEKEKYMPI-IWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLS 287
                           G   +   PI +    L++  +V+++ACG  HS+ L  +G + +
Sbjct: 110 ----------------GTTNQGIAPIQVCTNLLIK--QVIEVACGSHHSMALAADGEVYA 151

Query: 288 CGSNVYGQLGREKQDMGMFPVDIN--FH---PVSISSGLGHSLAICEVRSSNVTGGARGI 342
            G N  GQ+G         P  +    H    VSI+ G   S+A+  + +  V G     
Sbjct: 152 WGYNNCGQVGSGSTANQPTPRKVTNCLHIKRVVSIACGQTSSMAV--LDNGEVYG----- 204

Query: 343 VSWGWNRSSQLG 354
             WG+N + QLG
Sbjct: 205 --WGYNGNGQLG 214


>gi|148681378|gb|EDL13325.1| regulator of chromosome condensation 2 [Mus musculus]
          Length = 498

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 81/293 (27%), Positives = 128/293 (43%), Gaps = 35/293 (11%)

Query: 75  HSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAI 134
           HSL +T  G +W+WGRN + QLG G  +       P+ +E L    +  A      + A+
Sbjct: 137 HSLLITTEGKLWSWGRNEKGQLGHGDTKRVEA---PRLIEALSHEAIVLAACGRNHTLAL 193

Query: 135 GDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLF 194
            D GS++ +G++K GQLGLG        P+++    G+ I K++ G   ++     G L+
Sbjct: 194 TDTGSVFAFGENKMGQLGLGNQTDAVPSPAQI-MYNGQPITKMACGAEFSMLMDCKGNLY 252

Query: 195 GWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPI 254
            +G    G++G+            N D    +  +      E   + V+  +EK K   I
Sbjct: 253 SFGCPEYGQLGH------------NSDGKFIARAQRIEYDCELVPRRVAIFIEKTKDGQI 300

Query: 255 IWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFH- 313
           +  P +V    V D+ACG +H+LVL     + S G   YG+LG  +Q   M P  +    
Sbjct: 301 LPVPNVV----VRDVACGANHTLVLDSQKRVFSWGFGGYGRLGHAEQKDEMVPRLVKLFD 356

Query: 314 -----PVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPDNV 361
                   I +G   S A+ EV          G+  WG   +S+   M P  V
Sbjct: 357 FPGRGATQIYAGYTCSFAVSEV---------GGLFFWGATNTSRESTMYPKAV 400



 Score = 48.9 bits (115), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 53/186 (28%), Positives = 80/186 (43%), Gaps = 31/186 (16%)

Query: 56  PTRVPGLPSDVTSVSA-GHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVE 114
           P  +  L  +   ++A G  H+LA+T+ G+V+A+G N   QLG G      T   P   +
Sbjct: 169 PRLIEALSHEAIVLAACGRNHTLALTDTGSVFAFGENKMGQLGLG----NQTDAVPSPAQ 224

Query: 115 GLDQVNVCAAFASGVVSSAIGD-DGSLWVWGKSKRGQLGL---GKDITEA--------IV 162
            +         A G   S + D  G+L+ +G  + GQLG    GK I  A        +V
Sbjct: 225 IMYNGQPITKMACGAEFSMLMDCKGNLYSFGCPEYGQLGHNSDGKFIARAQRIEYDCELV 284

Query: 163 PSRVEALAGEK-------------IVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGK 209
           P RV A+  EK             +  V+ G  H L      ++F WG+   GR+G+  +
Sbjct: 285 PRRV-AIFIEKTKDGQILPVPNVVVRDVACGANHTLVLDSQKRVFSWGFGGYGRLGHAEQ 343

Query: 210 ALESSP 215
             E  P
Sbjct: 344 KDEMVP 349


>gi|456861134|gb|EMF79839.1| chromosome condensation regulator RCC1 repeat protein [Leptospira
           weilii serovar Topaz str. LT2116]
          Length = 506

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 93/324 (28%), Positives = 157/324 (48%), Gaps = 33/324 (10%)

Query: 1   MRLLKSVVHNHVNVLTSRIFMRSASGTAVVSFGDGSQGALGLPTSLTG-----VGGDAYE 55
           +  ++++   H N   S   M  A    V ++G+ ++G LG+  + T        G+   
Sbjct: 174 LNSIRNIFSIHFNQNNS---MAIAKNGRVYTWGNNAKGQLGIGNNNTNPANPRTAGNRQP 230

Query: 56  PTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGA--LESRATWNDPKRV 113
           PT +PG+  D    + G  H+L + ++G V A+G+NN  QLG GA  L + +   +P  V
Sbjct: 231 PTLIPGI-DDAVMGAYGFNHALILKSDGTVVAFGQNNVGQLGNGANNLNADSFSMNPVAV 289

Query: 114 EGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGK---DITEAIVPSRVEALA 170
            GL   +V    A    S+A+ ++G ++VWG+++ G LG G+          P +VE L+
Sbjct: 290 VGLR--DVIQVIAGSEHSAALTENGEVYVWGRNQYGNLGNGRLSAANAAQSTPVKVEGLS 347

Query: 171 GEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGK-ALESSPLDSNI----DRSSE 225
           G  I +++ G  H LA   DGK++ WG +A G++G  G  +   +P+ + +    + SS 
Sbjct: 348 G--IKQIANGRDHILALASDGKIYSWGLNASGQLGIGGNGSPNPTPIPTQVLNILNASSV 405

Query: 226 SDQEISSSTIEKAQKLVSEGMEK--------EKYMPIIWEPF-LVEGVE-VVDIACGFDH 275
                 S +I K+ ++   G           E     ++EP   V G++ V+   CG  H
Sbjct: 406 WAGGTQSFSILKSGEVKGWGANGNTANLAIGETNTQKVYEPNKAVVGIDDVIHFGCGATH 465

Query: 276 SLVLGRNGVLLSCGSNVYGQLGRE 299
           + VL  NG +   G N  G LGR+
Sbjct: 466 NFVLLGNGEIYGWGWNFKGSLGRQ 489



 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 84/315 (26%), Positives = 122/315 (38%), Gaps = 57/315 (18%)

Query: 67  TSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFA 126
           T +SAG  HS     NG V+  GRNN  QLG G   S    N+   V+     N+ +   
Sbjct: 129 TKLSAGGAHS-GFLKNGEVYTTGRNNFGQLGTG--NSTGDENNDVIVKLNSIRNIFSIHF 185

Query: 127 SGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRV------EALAG-EKIVKVSF 179
           +   S AI  +G ++ WG + +GQLG+G + T    P           + G +  V  ++
Sbjct: 186 NQNNSMAIAKNGRVYTWGNNAKGQLGIGNNNTNPANPRTAGNRQPPTLIPGIDDAVMGAY 245

Query: 180 GWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQ 239
           G+ HAL    DG +  +G +  G++GN    L +     N                    
Sbjct: 246 GFNHALILKSDGTVVAFGQNNVGQLGNGANNLNADSFSMN-------------------- 285

Query: 240 KLVSEGMEKEKYMPIIWEPFLVEGV-EVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGR 298
                             P  V G+ +V+ +  G +HS  L  NG +   G N YG LG 
Sbjct: 286 ------------------PVAVVGLRDVIQVIAGSEHSAALTENGEVYVWGRNQYGNLGN 327

Query: 299 EKQDMGMFPVDINFHPVSISSGLGHSLAICEVRSSNVTGGARG-IVSWGWNRSSQLGRMG 357
            +             PV +  GL     I   R   +   + G I SWG N S QLG  G
Sbjct: 328 GRLSAANAAQST---PVKV-EGLSGIKQIANGRDHILALASDGKIYSWGLNASGQLGIGG 383

Query: 358 ---PDNVPLVVEGLE 369
              P+  P+  + L 
Sbjct: 384 NGSPNPTPIPTQVLN 398



 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 59/262 (22%), Positives = 106/262 (40%), Gaps = 60/262 (22%)

Query: 125 FASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHA 184
            ++G   S    +G ++  G++  GQLG G    +      V+  +   I  + F   ++
Sbjct: 131 LSAGGAHSGFLKNGEVYTTGRNNFGQLGTGNSTGDENNDVIVKLNSIRNIFSIHFNQNNS 190

Query: 185 LAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSE 244
           +A  ++G+++ WG +A G++G                        I ++    A    + 
Sbjct: 191 MAIAKNGRVYTWGNNAKGQLG------------------------IGNNNTNPANPRTAG 226

Query: 245 GMEKEKYMPIIWEPFLVEGVE-VVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDM 303
             +          P L+ G++  V  A GF+H+L+L  +G +++ G N  GQLG    ++
Sbjct: 227 NRQP---------PTLIPGIDDAVMGAYGFNHALILKSDGTVVAFGQNNVGQLGNGANNL 277

Query: 304 GMFPVDINFHPVSIS---------SGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQL- 353
                 +N  PV++          +G  HS A+ E            +  WG N+   L 
Sbjct: 278 NADSFSMN--PVAVVGLRDVIQVIAGSEHSAALTENGE---------VYVWGRNQYGNLG 326

Query: 354 -GRMGPDN----VPLVVEGLEG 370
            GR+   N     P+ VEGL G
Sbjct: 327 NGRLSAANAAQSTPVKVEGLSG 348


>gi|157820833|ref|NP_001102101.1| probable E3 ubiquitin-protein ligase HERC3 [Rattus norvegicus]
 gi|149033223|gb|EDL88024.1| hect domain and RLD 3 (predicted), isoform CRA_a [Rattus
           norvegicus]
 gi|149033224|gb|EDL88025.1| hect domain and RLD 3 (predicted), isoform CRA_a [Rattus
           norvegicus]
 gi|149033225|gb|EDL88026.1| hect domain and RLD 3 (predicted), isoform CRA_a [Rattus
           norvegicus]
          Length = 1050

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 68/252 (26%), Positives = 117/252 (46%), Gaps = 29/252 (11%)

Query: 66  VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAF 125
           +  V+ G  HSLA+++ G +++WG  ++ QLG    E       P+ ++ L+Q  +    
Sbjct: 86  IIHVACGESHSLALSDRGQLFSWGAGSDGQLGLMTTEDSVAV--PRLIQKLNQQTILQVS 143

Query: 126 ASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHAL 185
                  A+  DG  + WGK+  GQLGLGK+      P RV +L G  + +V+ G  H+ 
Sbjct: 144 CGNWHCLALAADGQFFTWGKNSHGQLGLGKEFPSQTSPQRVRSLEGIPLAQVAAGGAHSF 203

Query: 186 AQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSE----SDQEISSSTIEKA--- 238
           A +  G +FGWG +  G++G   +    SP    + R+ +    S  E  ++ + K+   
Sbjct: 204 ALSLSGAVFGWGMNNAGQLGLSDEKDRESPCHVKLLRTQKVVYISCGEEHTAVLTKSGGV 263

Query: 239 ------------QKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVL-GRNGVL 285
                          V++ +   + + ++       G EV  IACG  H+L L   +G++
Sbjct: 264 FTFGAGSCGQLGHDSVNDEVNPRRVLELM-------GSEVTQIACGRQHTLALVPSSGLI 316

Query: 286 LSCGSNVYGQLG 297
            + G    GQLG
Sbjct: 317 YAFGCGAKGQLG 328



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 80/280 (28%), Positives = 126/280 (45%), Gaps = 29/280 (10%)

Query: 39  ALGLPTSLTGVGGDAYEPTRVPGLPSD--VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQL 96
           +LG P   + + G   EP +V    SD  +  V+ G  HS+ +  +G V+  G N + QL
Sbjct: 8   SLGQPGISSNLQGIVAEP-QVCRFVSDRSIKEVACGGNHSVFLLEDGEVYTCGVNTKGQL 66

Query: 97  GRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKD 156
           G          N P+++  L   ++         S A+ D G L+ WG    GQLGL   
Sbjct: 67  GH-----EREGNKPEQIGALADQHIIHVACGESHSLALSDRGQLFSWGAGSDGQLGLMTT 121

Query: 157 ITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPL 216
                VP  ++ L  + I++VS G  H LA   DG+ F WG ++ G++G LGK   S   
Sbjct: 122 EDSVAVPRLIQKLNQQTILQVSCGNWHCLALAADGQFFTWGKNSHGQLG-LGKEFPSQTS 180

Query: 217 DSNIDRSSESDQEIS-------SSTIEKAQKLVSEGM----------EKEKYMPIIWEPF 259
              + RS E             S  +  +  +   GM          EK++  P   +  
Sbjct: 181 PQRV-RSLEGIPLAQVAAGGAHSFALSLSGAVFGWGMNNAGQLGLSDEKDRESPCHVK-- 237

Query: 260 LVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGRE 299
           L+   +VV I+CG +H+ VL ++G + + G+   GQLG +
Sbjct: 238 LLRTQKVVYISCGEEHTAVLTKSGGVFTFGAGSCGQLGHD 277


>gi|7959201|dbj|BAA95994.1| KIAA1470 protein [Homo sapiens]
          Length = 564

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 81/293 (27%), Positives = 130/293 (44%), Gaps = 35/293 (11%)

Query: 75  HSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAI 134
           HSL +T  G +W+WGRN + QLG G  +       P+ +EGL    + +A      + A+
Sbjct: 203 HSLLITTEGKLWSWGRNEKGQLGHGDTKRVEA---PRLIEGLSHEVIVSAACGRNHTLAL 259

Query: 135 GDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLF 194
            + GS++ +G++K GQLGLG        P+++    G+ I K++ G   ++     G L+
Sbjct: 260 TETGSVFAFGENKMGQLGLGNQTDAVPSPAQI-MYNGQPITKMACGAEFSMIMDCKGNLY 318

Query: 195 GWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPI 254
            +G    G++G+            N D    +  +      E   + V+  +EK K   I
Sbjct: 319 SFGCPEYGQLGH------------NSDGKFIARAQRIEYDCELVPRRVAIFIEKTKDGQI 366

Query: 255 IWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFHP 314
           +  P +V    V D+ACG +H+LVL     + S G   YG+LG  +Q   M P  +    
Sbjct: 367 LPVPNVV----VRDVACGANHTLVLDSQKRVFSWGFGGYGRLGHAEQKDEMVPRLVKLFD 422

Query: 315 V------SISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPDNV 361
                   I +G   S A+ EV          G+  WG   +S+   M P  V
Sbjct: 423 FPGRGASQIYAGYTCSFAVSEV---------GGLFFWGATNTSRESTMYPKAV 466



 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 56/186 (30%), Positives = 80/186 (43%), Gaps = 31/186 (16%)

Query: 56  PTRVPGLPSDV-TSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVE 114
           P  + GL  +V  S + G  H+LA+T  G+V+A+G N   QLG G      T   P   +
Sbjct: 235 PRLIEGLSHEVIVSAACGRNHTLALTETGSVFAFGENKMGQLGLG----NQTDAVPSPAQ 290

Query: 115 GLDQVNVCAAFASGVVSSAIGD-DGSLWVWGKSKRGQLGL---GKDITEA--------IV 162
            +         A G   S I D  G+L+ +G  + GQLG    GK I  A        +V
Sbjct: 291 IMYNGQPITKMACGAEFSMIMDCKGNLYSFGCPEYGQLGHNSDGKFIARAQRIEYDCELV 350

Query: 163 PSRVEALAGEK-------------IVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGK 209
           P RV A+  EK             +  V+ G  H L      ++F WG+   GR+G+  +
Sbjct: 351 PRRV-AIFIEKTKDGQILPVPNVVVRDVACGANHTLVLDSQKRVFSWGFGGYGRLGHAEQ 409

Query: 210 ALESSP 215
             E  P
Sbjct: 410 KDEMVP 415


>gi|408500692|ref|YP_006864611.1| RCC1 repeat-containing protein [Bifidobacterium asteroides PRL2011]
 gi|408465516|gb|AFU71045.1| RCC1 repeat-containing protein [Bifidobacterium asteroides PRL2011]
          Length = 1279

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 104/369 (28%), Positives = 158/369 (42%), Gaps = 73/369 (19%)

Query: 56   PTRVPGLPS------DVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWND 109
            P R+P LP         T V+AG  H LA+ +NG V++WGRN+  QLG G    R    +
Sbjct: 837  PVRIP-LPDGADSSFTYTQVAAGDSHVLAIGSNGIVYSWGRNDHGQLGDGTTTDRY---N 892

Query: 110  PKRV-----EGLDQVNVCAAFASGVVSSAIGDDGSLWVWG--KSKRGQLGLGKDITEAIV 162
            P+ V     +    V V A  A    S+AI  +  ++ WG   + +GQ        +   
Sbjct: 893  PQPVKDTGGQPFKAVQVSAGVAD---SAAIDSENRVYTWGSESTGKGQTPAYSTTRKNPT 949

Query: 163  PSRVEALAGEKI--VKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNI 220
            P+      G+ +  V+VS  W   +A   DG ++ WGY+ +G++GN     +S+   SN 
Sbjct: 950  PAADPDNPGQTLHAVQVSLNWSFVMALDADGNVYTWGYNTNGQLGN--GTSDSTSYASNP 1007

Query: 221  DR-SSESDQ--EISSSTIE---------------KAQKLVSEGMEKEKYMP-IIWEPF-L 260
             R  S+S Q  +IS+ +                      + +G   +KY P  +  P   
Sbjct: 1008 ARLPSQSFQASQISAGSWHALAIDTDGNTWTWGYNGYGQLGDGSTSDKYKPQTVQNPTDT 1067

Query: 261  VEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDI--------NF 312
             + ++   I+ G DHSLV+ R+G L + G N  GQLG         P  I         F
Sbjct: 1068 SQSLKATQISAGVDHSLVVDRDGSLWAWGWNSNGQLGIGNTVNQTKPATIKDPANKAQTF 1127

Query: 313  HPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGR------------MGPDN 360
              V  S+G  HSLAI +  +         + +WG N+  QLG             +  D 
Sbjct: 1128 KAVRSSAGQLHSLAIRQDGN---------LWAWGDNQYGQLGNNQTATRNTTPMPVAFDP 1178

Query: 361  VPLVVEGLE 369
             PLV+ G+ 
Sbjct: 1179 TPLVLTGVR 1187



 Score = 85.1 bits (209), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 61/191 (31%), Positives = 95/191 (49%), Gaps = 8/191 (4%)

Query: 29   VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAW 88
            V ++G  + G LG  TS +     A  P R+P      + +SAG +H+LA+  +G  W W
Sbjct: 982  VYTWGYNTNGQLGNGTSDST--SYASNPARLPSQSFQASQISAGSWHALAIDTDGNTWTW 1039

Query: 89   GRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGD-DGSLWVWGKSK 147
            G N   QLG G+   +      +      Q       ++GV  S + D DGSLW WG + 
Sbjct: 1040 GYNGYGQLGDGSTSDKYKPQTVQNPTDTSQSLKATQISAGVDHSLVVDRDGSLWAWGWNS 1099

Query: 148  RGQLGLGKDITEAIVPSRVEALAGE----KIVKVSFGWGHALAQTEDGKLFGWGYSADGR 203
             GQLG+G  + +   P+ ++  A +    K V+ S G  H+LA  +DG L+ WG +  G+
Sbjct: 1100 NGQLGIGNTVNQ-TKPATIKDPANKAQTFKAVRSSAGQLHSLAIRQDGNLWAWGDNQYGQ 1158

Query: 204  IGNLGKALESS 214
            +GN   A  ++
Sbjct: 1159 LGNNQTATRNT 1169



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 49/156 (31%), Positives = 73/156 (46%), Gaps = 6/156 (3%)

Query: 66  VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQ-VNVCAA 124
            + VSAG  H LAV ++G +++WG N+  QLG G    R      K+ +G+ Q      A
Sbjct: 236 FSQVSAGRGHILAVASDGNLYSWGSNDHGQLGDGTTAERHEPVPVKKPQGVSQDFTWVQA 295

Query: 125 FASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRV----EALAGEKIVKVSFG 180
            A  + S  +G DG L+ WG +  GQLG     T    P  V     A +G    + + G
Sbjct: 296 SAGYLFSVGLGSDGKLYSWGDNTYGQLG-NNTTTAHYTPEPVNLPQNAPSGFTWKQEAVG 354

Query: 181 WGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPL 216
             HAL    DG L+ WG +   ++G+       +P+
Sbjct: 355 SLHALGLGSDGNLYSWGDNDHNQLGDGTTTERHAPI 390



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 48/131 (36%), Positives = 60/131 (45%), Gaps = 18/131 (13%)

Query: 48   GVGGDAYEPTRVPGLPSDV------TSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGAL 101
            G   D Y+P  V   P+D       T +SAG  HSL V  +G++WAWG N+  QLG G  
Sbjct: 1050 GSTSDKYKPQTVQN-PTDTSQSLKATQISAGVDHSLVVDRDGSLWAWGWNSNGQLGIGN- 1107

Query: 102  ESRATWNDPKRVEGLDQVNVCAAF------ASGVVSSAIGDDGSLWVWGKSKRGQLGLGK 155
                T N  K     D  N    F      A  + S AI  DG+LW WG ++ GQLG  +
Sbjct: 1108 ----TVNQTKPATIKDPANKAQTFKAVRSSAGQLHSLAIRQDGNLWAWGDNQYGQLGNNQ 1163

Query: 156  DITEAIVPSRV 166
              T    P  V
Sbjct: 1164 TATRNTTPMPV 1174



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 85/334 (25%), Positives = 139/334 (41%), Gaps = 47/334 (14%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVP-GLPSDVT--SVSAGHYHSLAVTNNGAV 85
           + S+GD + G LG  T+         EP  +P   PS  T    + G  H+L + ++G +
Sbjct: 311 LYSWGDNTYGQLGNNTTTAHY---TPEPVNLPQNAPSGFTWKQEAVGSLHALGLGSDGNL 367

Query: 86  WAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFAS----GVVSSAIGDDGSLW 141
           ++WG N+  QLG G    R   + P +V+    V    A+      G  S A+G D  ++
Sbjct: 368 YSWGDNDHNQLGDGTTTER---HAPIQVKMPSGVPSGFAWKQMSGWGWHSLALGSDNWIY 424

Query: 142 VWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSAD 201
            WG + RG++G G      I P R+    G   V  +F WG    Q + G  +     +D
Sbjct: 425 GWGANTRGEVGTGSITDNKITPVRIATPQG---VPSNFTWG----QFQMGDYYSQAIGSD 477

Query: 202 GRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLV 261
           G I   G     +                + ST++      ++  +    +P     F  
Sbjct: 478 GNIYTWGYGGNGN--------------VGNGSTVDVYGP--TQAHKPNGVLPN----FSW 517

Query: 262 EGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFHPVSISSGL 321
           + V ++ +A     SL +G +G L S G+N  GQLG         P+ +   P +  +GL
Sbjct: 518 KQVSLLSVA-----SLAIGSDGNLYSWGANNNGQLGDNTTTQRNTPIRV-AAPQNAPTGL 571

Query: 322 GHSLAICEVRSSNVTGGARG-IVSWGWNRSSQLG 354
               A     +++    + G + SWG N + QLG
Sbjct: 572 TWVQASAGWDNNSFGLASDGNLYSWGKNANGQLG 605



 Score = 52.4 bits (124), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 97/358 (27%), Positives = 143/358 (39%), Gaps = 86/358 (24%)

Query: 24  ASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVP---GLPSDVTSV--SAGHYHSLA 78
           AS   + S+G    G LG      G   + +EP  V    G+  D T V  SAG+  S+ 
Sbjct: 250 ASDGNLYSWGSNDHGQLG-----DGTTAERHEPVPVKKPQGVSQDFTWVQASAGYLFSVG 304

Query: 79  VTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAF-----ASGVVSS- 132
           + ++G +++WG N   QLG     +  T   P+ V  L Q N  + F     A G + + 
Sbjct: 305 LGSDGKLYSWGDNTYGQLGNNTTTAHYT---PEPVN-LPQ-NAPSGFTWKQEAVGSLHAL 359

Query: 133 AIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEK---IVKVSFGWG-HALAQT 188
            +G DG+L+ WG +   QLG G   TE   P +V+  +G       K   GWG H+LA  
Sbjct: 360 GLGSDGNLYSWGDNDHNQLGDGT-TTERHAPIQVKMPSGVPSGFAWKQMSGWGWHSLALG 418

Query: 189 EDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEK 248
            D  ++GWG +  G +G                  S +D +I+   I   Q + S     
Sbjct: 419 SDNWIYGWGANTRGEVGT----------------GSITDNKITPVRIATPQGVPSN---- 458

Query: 249 EKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGS------------NVYGQL 296
                  W  F +          G  +S  +G +G + + G             +VYG  
Sbjct: 459 -----FTWGQFQM----------GDYYSQAIGSDGNIYTWGYGGNGNVGNGSTVDVYGPT 503

Query: 297 GREKQDMGMFPVDINFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLG 354
              K + G+ P   NF    +S     SLAI         G    + SWG N + QLG
Sbjct: 504 QAHKPN-GVLP---NFSWKQVSLLSVASLAI---------GSDGNLYSWGANNNGQLG 548



 Score = 51.2 bits (121), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 48/159 (30%), Positives = 76/159 (47%), Gaps = 19/159 (11%)

Query: 61  GLPSDVT--SVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGL-- 116
           G+PS+ T      G Y+S A+ ++G ++ WG      +G G+           +  G+  
Sbjct: 454 GVPSNFTWGQFQMGDYYSQAIGSDGNIYTWGYGGNGNVGNGSTVDVYGPTQAHKPNGVLP 513

Query: 117 ----DQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRV----EA 168
                QV++ +     V S AIG DG+L+ WG +  GQLG     T+   P RV     A
Sbjct: 514 NFSWKQVSLLS-----VASLAIGSDGNLYSWGANNNGQLG-DNTTTQRNTPIRVAAPQNA 567

Query: 169 LAGEKIVKVSFGW-GHALAQTEDGKLFGWGYSADGRIGN 206
             G   V+ S GW  ++     DG L+ WG +A+G++G+
Sbjct: 568 PTGLTWVQASAGWDNNSFGLASDGNLYSWGKNANGQLGD 606



 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 59/235 (25%), Positives = 86/235 (36%), Gaps = 60/235 (25%)

Query: 133 AIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKI----VKVSFGWGHALAQT 188
           A+  DG+L+ WG +  GQLG G    E   P  V+   G       V+ S G+  ++   
Sbjct: 248 AVASDGNLYSWGSNDHGQLGDGT-TAERHEPVPVKKPQGVSQDFTWVQASAGYLFSVGLG 306

Query: 189 EDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEK 248
            DGKL+ WG +  G++GN       +P   N+ +++ S                      
Sbjct: 307 SDGKLYSWGDNTYGQLGNNTTTAHYTPEPVNLPQNAPS---------------------- 344

Query: 249 EKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPV 308
                         G      A G  H+L LG +G L S G N + QLG         P+
Sbjct: 345 --------------GFTWKQEAVGSLHALGLGSDGNLYSWGDNDHNQLGDGTTTERHAPI 390

Query: 309 DINFHPVSISSGLG---------HSLAICEVRSSNVTGGARGIVSWGWNRSSQLG 354
            +   P  + SG           HSLA+         G    I  WG N   ++G
Sbjct: 391 QVKM-PSGVPSGFAWKQMSGWGWHSLAL---------GSDNWIYGWGANTRGEVG 435



 Score = 46.2 bits (108), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 70/302 (23%), Positives = 120/302 (39%), Gaps = 66/302 (21%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTS------VSAGHYHSLAVTNN 82
           + S+GD     LG      G   + + P +V  +PS V S      +S   +HSLA+ ++
Sbjct: 367 LYSWGDNDHNQLG-----DGTTTERHAPIQV-KMPSGVPSGFAWKQMSGWGWHSLALGSD 420

Query: 83  GAVWAWGRNNEVQLGRGALESRATWNDPKRV---EGLDQVNVCAAFASG-VVSSAIGDDG 138
             ++ WG N   ++G G++        P R+   +G+        F  G   S AIG DG
Sbjct: 421 NWIYGWGANTRGEVGTGSITDNKI--TPVRIATPQGVPSNFTWGQFQMGDYYSQAIGSDG 478

Query: 139 SLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGH-------ALAQTEDG 191
           +++ WG    G +G G  + +   P++     G   V  +F W         +LA   DG
Sbjct: 479 NIYTWGYGGNGNVGNGSTV-DVYGPTQAHKPNG---VLPNFSWKQVSLLSVASLAIGSDG 534

Query: 192 KLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKY 251
            L+ WG + +G++G+      ++P+     +++ +                         
Sbjct: 535 NLYSWGANNNGQLGDNTTTQRNTPIRVAAPQNAPT------------------------- 569

Query: 252 MPIIWEPFLVEGVEVVDIACGFD-HSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDI 310
                      G+  V  + G+D +S  L  +G L S G N  GQLG    +    P  +
Sbjct: 570 -----------GLTWVQASAGWDNNSFGLASDGNLYSWGKNANGQLGDNTTNDRHIPGRV 618

Query: 311 NF 312
           N 
Sbjct: 619 NM 620



 Score = 41.2 bits (95), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 34/112 (30%), Positives = 51/112 (45%), Gaps = 21/112 (18%)

Query: 254 IIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGM--FPV--- 308
            I  P +  G+    ++ G   S+ +  +G   + G+N YGQL ++  D+ M   PV   
Sbjct: 782 TITPPTINRGIRFDQVSAGGSFSIGVASDGNAYAWGNNKYGQLAQKPADVSMQKTPVRIP 841

Query: 309 -----DINFHPVSISSGLGHSLAICEVRSSNVTGGARGIV-SWGWNRSSQLG 354
                D +F    +++G  H LAI          G+ GIV SWG N   QLG
Sbjct: 842 LPDGADSSFTYTQVAAGDSHVLAI----------GSNGIVYSWGRNDHGQLG 883


>gi|301777289|ref|XP_002924055.1| PREDICTED: protein RCC2-like [Ailuropoda melanoleuca]
          Length = 447

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 82/293 (27%), Positives = 129/293 (44%), Gaps = 35/293 (11%)

Query: 75  HSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAI 134
           HSL +T  G +W+WGRN + QLG G  +       PK +EGL    + +A      + A+
Sbjct: 86  HSLLITTEGKLWSWGRNEKGQLGHGDTKRVEA---PKLIEGLSHEVIVSAACGRNHTLAL 142

Query: 135 GDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLF 194
            + GS+  +G++K GQLGLG        P+++    G+ I K++ G   ++     G L+
Sbjct: 143 TETGSVLAFGENKMGQLGLGNQTDAVPSPAQI-MYNGQPITKMACGAEFSMIMDCKGNLY 201

Query: 195 GWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPI 254
            +G    G++G+            N D    +  +      E   + V+  +EK K   I
Sbjct: 202 SFGCPEYGQLGH------------NSDGKFIARAQRIEYDCELVPRRVAIFIEKTKDGQI 249

Query: 255 IWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFHP 314
           +  P +V    V D+ACG +H+LVL     + S G   YG+LG  +Q   M P  +    
Sbjct: 250 LPVPNVV----VRDVACGANHTLVLDSQKRVFSWGFGGYGRLGHAEQKDEMVPRLVKLFD 305

Query: 315 V------SISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPDNV 361
                   I +G   S A+ EV          G+  WG   +S+   M P  V
Sbjct: 306 FPGRGASQIYAGYTCSFAVSEV---------GGLFFWGATNTSRESTMYPKAV 349



 Score = 52.4 bits (124), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 56/186 (30%), Positives = 79/186 (42%), Gaps = 31/186 (16%)

Query: 56  PTRVPGLPSDV-TSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVE 114
           P  + GL  +V  S + G  H+LA+T  G+V A+G N   QLG G      T   P   +
Sbjct: 118 PKLIEGLSHEVIVSAACGRNHTLALTETGSVLAFGENKMGQLGLG----NQTDAVPSPAQ 173

Query: 115 GLDQVNVCAAFASGVVSSAIGD-DGSLWVWGKSKRGQLGL---GKDITEA--------IV 162
            +         A G   S I D  G+L+ +G  + GQLG    GK I  A        +V
Sbjct: 174 IMYNGQPITKMACGAEFSMIMDCKGNLYSFGCPEYGQLGHNSDGKFIARAQRIEYDCELV 233

Query: 163 PSRVEALAGEK-------------IVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGK 209
           P RV A+  EK             +  V+ G  H L      ++F WG+   GR+G+  +
Sbjct: 234 PRRV-AIFIEKTKDGQILPVPNVVVRDVACGANHTLVLDSQKRVFSWGFGGYGRLGHAEQ 292

Query: 210 ALESSP 215
             E  P
Sbjct: 293 KDEMVP 298


>gi|402853137|ref|XP_003891257.1| PREDICTED: protein RCC2 [Papio anubis]
 gi|383419997|gb|AFH33212.1| protein RCC2 [Macaca mulatta]
 gi|383419999|gb|AFH33213.1| protein RCC2 [Macaca mulatta]
 gi|384948234|gb|AFI37722.1| protein RCC2 [Macaca mulatta]
 gi|387541966|gb|AFJ71610.1| protein RCC2 [Macaca mulatta]
          Length = 523

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 81/293 (27%), Positives = 130/293 (44%), Gaps = 35/293 (11%)

Query: 75  HSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAI 134
           HSL +T  G +W+WGRN + QLG G  +       P+ +EGL    + +A      + A+
Sbjct: 162 HSLLITTEGKLWSWGRNEKGQLGHGDTKRVEA---PRLIEGLSHEVIVSAACGRNHTLAL 218

Query: 135 GDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLF 194
            + GS++ +G++K GQLGLG        P+++    G+ I K++ G   ++     G L+
Sbjct: 219 TETGSVFAFGENKMGQLGLGNQTDAVPSPAQI-MYNGQPITKMACGAEFSMIMDCKGNLY 277

Query: 195 GWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPI 254
            +G    G++G+            N D    +  +      E   + V+  +EK K   I
Sbjct: 278 SFGCPEYGQLGH------------NSDGKFIARAQRIEYDCELVPRRVAIFIEKTKDGQI 325

Query: 255 IWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFHP 314
           +  P +V    V D+ACG +H+LVL     + S G   YG+LG  +Q   M P  +    
Sbjct: 326 LPVPNVV----VRDVACGANHTLVLDSQKRVFSWGFGGYGRLGHAEQKDEMVPRLVKLFD 381

Query: 315 V------SISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPDNV 361
                   I +G   S A+ EV          G+  WG   +S+   M P  V
Sbjct: 382 FPGRGASQIYAGYTCSFAVSEV---------GGLFFWGATNTSRESTMYPKAV 425



 Score = 52.8 bits (125), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 56/186 (30%), Positives = 80/186 (43%), Gaps = 31/186 (16%)

Query: 56  PTRVPGLPSDV-TSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVE 114
           P  + GL  +V  S + G  H+LA+T  G+V+A+G N   QLG G      T   P   +
Sbjct: 194 PRLIEGLSHEVIVSAACGRNHTLALTETGSVFAFGENKMGQLGLG----NQTDAVPSPAQ 249

Query: 115 GLDQVNVCAAFASGVVSSAIGD-DGSLWVWGKSKRGQLGL---GKDITEA--------IV 162
            +         A G   S I D  G+L+ +G  + GQLG    GK I  A        +V
Sbjct: 250 IMYNGQPITKMACGAEFSMIMDCKGNLYSFGCPEYGQLGHNSDGKFIARAQRIEYDCELV 309

Query: 163 PSRVEALAGEK-------------IVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGK 209
           P RV A+  EK             +  V+ G  H L      ++F WG+   GR+G+  +
Sbjct: 310 PRRV-AIFIEKTKDGQILPVPNVVVRDVACGANHTLVLDSQKRVFSWGFGGYGRLGHAEQ 368

Query: 210 ALESSP 215
             E  P
Sbjct: 369 KDEMVP 374


>gi|320163091|gb|EFW39990.1| chromosome condensation regulator RCC1 [Capsaspora owczarzaki ATCC
           30864]
          Length = 1230

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 87/303 (28%), Positives = 146/303 (48%), Gaps = 36/303 (11%)

Query: 83  GAVWAWGRNNEVQLG-RGALESRATWNDPKRVEGLDQVN---VCAAFASGVVSSAIGDDG 138
           G+VWAWG   + QLG R   +      +P  +E    V+   + +A A G   +    DG
Sbjct: 83  GSVWAWGNPTDGQLGLRLTNDHTLAVPEPTELEAFSSVSMSTLASAIACGRAHTLFLVDG 142

Query: 139 SLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGY 198
            ++  G + +GQLG  K  ++   P RV+AL    I +++ G  H+LA T +G++F WG 
Sbjct: 143 QVYSCGSNDQGQLGHKKHRSK---PERVDALEPYTITQIACGETHSLALTSNGQVFAWG- 198

Query: 199 SADGRIGNLGKALESSPLDSNIDRSSESDQ-EISSSTIEKAQKLVSEGMEKEKYMPIIWE 257
             D +   LG     +P +S+   S+ S   + ++++I+   +L +  +    YM  +  
Sbjct: 199 --DNKASQLGL----TPSESSRQPSTRSSAPKTAAASIDDVDELDAATL---AYMDFMTR 249

Query: 258 PFLVE---GVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLG-REKQDMGMFPVDINFH 313
           P LV    G ++V I CG + SLVL   G + + G N  GQL  RE + + +  +    +
Sbjct: 250 PRLVRALTGHKIVQIVCGANFSLVLSERGDVFAWGDNTSGQLCLRELKTVPVPTLVKELY 309

Query: 314 PVSI---SSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQL--GRMGPDNVPLVVEGL 368
            + I   ++G  H+LA+         G    + SWG N+  QL  G   P  +P  ++ L
Sbjct: 310 GIPIRQLAAGGRHTLAL------TFNG---QVYSWGNNQFGQLGVGDTAPHTIPSRLKTL 360

Query: 369 EGE 371
           E +
Sbjct: 361 EHQ 363



 Score = 78.2 bits (191), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 93/359 (25%), Positives = 137/359 (38%), Gaps = 86/359 (23%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGL-PSDVTSVSAGHYHSLAVTNNGAVWA 87
           V S G   QG LG     +       +P RV  L P  +T ++ G  HSLA+T+NG V+A
Sbjct: 144 VYSCGSNDQGQLGHKKHRS-------KPERVDALEPYTITQIACGETHSLALTSNGQVFA 196

Query: 88  WGRNNEVQLGRGALESR--------------ATWND-----------------PKRVEGL 116
           WG N   QLG    ES               A+ +D                 P+ V  L
Sbjct: 197 WGDNKASQLGLTPSESSRQPSTRSSAPKTAAASIDDVDELDAATLAYMDFMTRPRLVRAL 256

Query: 117 DQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVK 176
               +         S  + + G ++ WG +  GQL L +++    VP+ V+ L G  I +
Sbjct: 257 TGHKIVQIVCGANFSLVLSERGDVFAWGDNTSGQLCL-RELKTVPVPTLVKELYGIPIRQ 315

Query: 177 VSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIE 236
           ++ G  H LA T +G+++ WG   + + G LG                    + +  TI 
Sbjct: 316 LAAGGRHTLALTFNGQVYSWG---NNQFGQLGVG------------------DTAPHTIP 354

Query: 237 KAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQL 296
              K +                          IACG DHS+VL   G + S G+   GQL
Sbjct: 355 SRLKTLEHQF-------------------CAHIACGEDHSVVLTETGGVYSFGAGGQGQL 395

Query: 297 GREKQDMGMFPVDINFHPVSISSGLGHSLAICEVRSSNV-TGGARGIVSWGWNRSSQLG 354
           G      G    +IN   +    G   S  +C  R + V       I ++G   + QLG
Sbjct: 396 GH-----GTLQNEINPRMIFELMGKSASQVLCGRRHTIVFFPKTNKIYAFGLGGNGQLG 449



 Score = 58.5 bits (140), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 56/183 (30%), Positives = 88/183 (48%), Gaps = 17/183 (9%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVP---GLPSDVTSVSAGHYHSLAVTNNGAV 85
           V ++GD + G L L   L  V      PT V    G+P  +  ++AG  H+LA+T NG V
Sbjct: 280 VFAWGDNTSGQLCL-RELKTVP----VPTLVKELYGIP--IRQLAAGGRHTLALTFNGQV 332

Query: 86  WAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAI-GDDGSLWVWG 144
           ++WG N   QLG G     A    P R++ L+    CA  A G   S +  + G ++ +G
Sbjct: 333 YSWGNNQFGQLGVG---DTAPHTIPSRLKTLEH-QFCAHIACGEDHSVVLTETGGVYSFG 388

Query: 145 KSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALA-QTEDGKLFGWGYSADGR 203
              +GQLG G  +   I P  +  L G+   +V  G  H +    +  K++ +G   +G+
Sbjct: 389 AGGQGQLGHGT-LQNEINPRMIFELMGKSASQVLCGRRHTIVFFPKTNKIYAFGLGGNGQ 447

Query: 204 IGN 206
           +G 
Sbjct: 448 LGT 450


>gi|410910244|ref|XP_003968600.1| PREDICTED: serine/threonine-protein kinase Nek8-like [Takifugu
           rubripes]
          Length = 705

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 98/373 (26%), Positives = 157/373 (42%), Gaps = 50/373 (13%)

Query: 21  MRSASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVT 80
           +RS  GT  +S G G   +L L +S+   G     P R+P L ++V  VS G    + VT
Sbjct: 299 IRSRDGT--ISLGSGKVHSLPL-SSVYTWGNGISSPLRLPMLNTEVLQVSLGRTQKMGVT 355

Query: 81  NNGAVWAWGR----NNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGD 136
            +G +  W      + EV L  GA+E        + +EG   V + +     + ++ + D
Sbjct: 356 KSGRLITWEAPSVGSGEVSLP-GAVEQMQPQFISRFLEGQSGVTIKSVSCGDLFTTCMTD 414

Query: 137 DGSLWVWGKSKRGQLGLGK--DITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLF 194
            G +  +G    G LG G   D+T+   P  VEAL G ++++VS G  H LA T + ++F
Sbjct: 415 RGIIMTFGSGSNGCLGHGNFNDVTQ---PKIVEALLGYELIQVSCGASHVLAVTNEREVF 471

Query: 195 GWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEIS---SSTIEKAQKLV--------- 242
           GWG   +GR+G   +   +SP    +    E+++ +     S I  +Q  +         
Sbjct: 472 GWGRGENGRLGLGTQDTHNSPQQVCLPVEFEANRVVCGVDCSIIVSSQYSILACGSNRFN 531

Query: 243 ----------------SEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLL 286
                           ++  E   Y PI  EP   E +  +DI  G  HS+ +   G   
Sbjct: 532 KLGLDTITTGEEPNPSNQVEEVHSYRPIQSEPLCSERIVHIDI--GTAHSVAVTEKGQCF 589

Query: 287 SCGSNVYGQLGREKQDMGMFPVDINFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWG 346
           + GSN +GQ+G   +     P         +    G S+A C    +   G    + +WG
Sbjct: 590 TFGSNQHGQIGCSSRRSSRVPYQ-------VPDLQGISMAACGDAFTLAIGSEGEVYTWG 642

Query: 347 WNRSSQLGRMGPD 359
                +LGR   D
Sbjct: 643 KGARGRLGRKEED 655


>gi|408501214|ref|YP_006865133.1| RCC1-like protein [Bifidobacterium asteroides PRL2011]
 gi|408466038|gb|AFU71567.1| RCC1-like protein [Bifidobacterium asteroides PRL2011]
          Length = 1086

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 91/344 (26%), Positives = 147/344 (42%), Gaps = 83/344 (24%)

Query: 52  DAYEPTRV--PGLPSD------VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALES 103
           ++Y P R+  PG P+D         VSAG++HSLA++N+G  +AWG +   QLG     S
Sbjct: 659 NSYVPVRIRDPGSPTDESRGLKAIQVSAGYWHSLALSNDGYAYAWGYDWYGQLGNNTSGS 718

Query: 104 RATWNDPKRVEGLDQ-------VNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLG-K 155
                 P  V   D        +      A  + S A+  +G ++ WG +  GQLG    
Sbjct: 719 SEYSPFPILVRNPDSPTDESMGLKTIQVSAGNLHSLALDSNGYVYAWGWNSYGQLGDNTN 778

Query: 156 DITE---AIVPSRV-------EALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIG 205
           DI+E   +  P RV       E   G K +++S G+ H++A   DG  + WG++  G++G
Sbjct: 779 DISEDSHSAFPVRVRDPANPSETNMGLKAIQISAGYDHSMAVGSDGYAYAWGWNVKGQLG 838

Query: 206 N--LGKALESSPLDSNI-DRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVE 262
           N  +  +   +P+  ++ D ++ +D                                  +
Sbjct: 839 NNTISDSYSGNPVPVHVRDPANPTDTS--------------------------------K 866

Query: 263 GVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDIN----------- 311
           G++   ++ G+ HSL +G +G     G N YGQLG   +     PV +            
Sbjct: 867 GLKATQVSAGYWHSLAVGSDGYAYGWGYNWYGQLGNNTKTDSYVPVPVRDPANPTDTNKG 926

Query: 312 FHPVSISSGLGHSLAICEVRSSNVTGGARGIV-SWGWNRSSQLG 354
                ISSG  HS+A+          G+ G V +WG N + +LG
Sbjct: 927 LKATQISSGYWHSMAV----------GSEGYVYAWGNNGNGRLG 960



 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 96/323 (29%), Positives = 140/323 (43%), Gaps = 79/323 (24%)

Query: 66  VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRG-ALESRATWNDPKRVEGLDQ---VNV 121
           ++S + G + SLAV ++G  +AWG N   QLG G A  SR T   P RV+  D+    ++
Sbjct: 561 ISSSNTGSF-SLAVGSDGNAYAWGDNTYGQLGDGTANNSRYT---PIRVKTPDRKTYPDL 616

Query: 122 CAAF------ASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRV-------EA 168
            A F      A G  S A+G DG  + WG +  GQLG     T + VP R+       + 
Sbjct: 617 PADFTYVQVSAGGRHSLAVGSDGYAYAWGNNNNGQLGNNTK-TNSYVPVRIRDPGSPTDE 675

Query: 169 LAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQ 228
             G K ++VS G+ H+LA + DG  + WGY   G++GN              + S  S+ 
Sbjct: 676 SRGLKAIQVSAGYWHSLALSNDGYAYAWGYDWYGQLGN--------------NTSGSSEY 721

Query: 229 EISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSC 288
                 +        E M                G++ + ++ G  HSL L  NG + + 
Sbjct: 722 SPFPILVRNPDSPTDESM----------------GLKTIQVSAGNLHSLALDSNGYVYAW 765

Query: 289 GSNVYGQLGREKQDM-----GMFPV-----------DINFHPVSISSGLGHSLAICEVRS 332
           G N YGQLG    D+       FPV           ++    + IS+G  HS+A+     
Sbjct: 766 GWNSYGQLGDNTNDISEDSHSAFPVRVRDPANPSETNMGLKAIQISAGYDHSMAV----- 820

Query: 333 SNVTGGARGIV-SWGWNRSSQLG 354
                G+ G   +WGWN   QLG
Sbjct: 821 -----GSDGYAYAWGWNVKGQLG 838



 Score = 85.5 bits (210), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 91/331 (27%), Positives = 137/331 (41%), Gaps = 74/331 (22%)

Query: 38  GALGLPTSLTGVGGDAYEP----TRVPGLPSD------VTSVSAGHYHSLAVTNNGAVWA 87
           G LG  TS    G   Y P     R P  P+D         VSAG+ HSLA+ +NG V+A
Sbjct: 709 GQLGNNTS----GSSEYSPFPILVRNPDSPTDESMGLKTIQVSAGNLHSLALDSNGYVYA 764

Query: 88  WGRNNEVQLGRGA------------LESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIG 135
           WG N+  QLG               +  R   N  +   GL  + + A +     S A+G
Sbjct: 765 WGWNSYGQLGDNTNDISEDSHSAFPVRVRDPANPSETNMGLKAIQISAGYDH---SMAVG 821

Query: 136 DDGSLWVWGKSKRGQLG---LGKDITEAIVPSRVEALA-------GEKIVKVSFGWGHAL 185
            DG  + WG + +GQLG   +    +   VP  V   A       G K  +VS G+ H+L
Sbjct: 822 SDGYAYAWGWNVKGQLGNNTISDSYSGNPVPVHVRDPANPTDTSKGLKATQVSAGYWHSL 881

Query: 186 AQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEG 245
           A   DG  +GWGY+  G++GN  K     P+    D ++ +D                  
Sbjct: 882 AVGSDGYAYGWGYNWYGQLGNNTKTDSYVPVPVR-DPANPTDTN---------------- 924

Query: 246 MEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGM 305
                           +G++   I+ G+ HS+ +G  G + + G+N  G+LG    +  +
Sbjct: 925 ----------------KGLKATQISSGYWHSMAVGSEGYVYAWGNNGNGRLGDGTTNGKL 968

Query: 306 FPVDI--NFHPVSISSGLGHSLAICEVRSSN 334
            PV +  N  PV  ++    S  +  +  SN
Sbjct: 969 APVSVVFNLQPVITAARFDASPGMHLIPVSN 999



 Score = 67.8 bits (164), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 62/204 (30%), Positives = 96/204 (47%), Gaps = 30/204 (14%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRV--PGLPSDVT------SVSAGHYHSLAVT 80
           V ++G  S G LG  T+       +  P RV  P  PS+         +SAG+ HS+AV 
Sbjct: 762 VYAWGWNSYGQLGDNTNDISEDSHSAFPVRVRDPANPSETNMGLKAIQISAGYDHSMAVG 821

Query: 81  NNGAVWAWGRNNEVQLGRGALESRATWN-------DPKRV----EGLDQVNVCAAFASGV 129
           ++G  +AWG N + QLG   +    + N       DP       +GL    V A +   +
Sbjct: 822 SDGYAYAWGWNVKGQLGNNTISDSYSGNPVPVHVRDPANPTDTSKGLKATQVSAGYWHSL 881

Query: 130 VSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALA-------GEKIVKVSFGWG 182
              A+G DG  + WG +  GQLG     T++ VP  V   A       G K  ++S G+ 
Sbjct: 882 ---AVGSDGYAYGWGYNWYGQLG-NNTKTDSYVPVPVRDPANPTDTNKGLKATQISSGYW 937

Query: 183 HALAQTEDGKLFGWGYSADGRIGN 206
           H++A   +G ++ WG + +GR+G+
Sbjct: 938 HSMAVGSEGYVYAWGNNGNGRLGD 961


>gi|332261039|ref|XP_003279586.1| PREDICTED: protein RCC2 [Nomascus leucogenys]
          Length = 448

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 81/293 (27%), Positives = 130/293 (44%), Gaps = 35/293 (11%)

Query: 75  HSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAI 134
           HSL +T  G +W+WGRN + QLG G  +       P+ +EGL    + +A      + A+
Sbjct: 87  HSLLITTEGKLWSWGRNEKGQLGHGDTKRVEA---PRLIEGLSHEVIVSAACGRNHTLAL 143

Query: 135 GDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLF 194
            + GS++ +G++K GQLGLG        P+++    G+ I K++ G   ++     G L+
Sbjct: 144 TETGSVFAFGENKMGQLGLGNQTDAVPSPAQI-MYNGQPITKMACGAEFSMIMDCKGNLY 202

Query: 195 GWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPI 254
            +G    G++G+            N D    +  +      E   + V+  +EK K   I
Sbjct: 203 SFGCPEYGQLGH------------NSDGKFIARAQRIEYDCELVPRRVAIFIEKTKDGQI 250

Query: 255 IWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFHP 314
           +  P +V    V D+ACG +H+LVL     + S G   YG+LG  +Q   M P  +    
Sbjct: 251 LPVPNVV----VRDVACGANHTLVLDSQKRVFSWGFGGYGRLGHAEQKDEMVPRLVKLFD 306

Query: 315 V------SISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPDNV 361
                   I +G   S A+ EV          G+  WG   +S+   M P  V
Sbjct: 307 FPGRGASQIYAGYTCSFAVSEV---------GGLFFWGATNTSRESTMYPKAV 350



 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 56/186 (30%), Positives = 80/186 (43%), Gaps = 31/186 (16%)

Query: 56  PTRVPGLPSDV-TSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVE 114
           P  + GL  +V  S + G  H+LA+T  G+V+A+G N   QLG G      T   P   +
Sbjct: 119 PRLIEGLSHEVIVSAACGRNHTLALTETGSVFAFGENKMGQLGLG----NQTDAVPSPAQ 174

Query: 115 GLDQVNVCAAFASGVVSSAIGD-DGSLWVWGKSKRGQLGL---GKDITEA--------IV 162
            +         A G   S I D  G+L+ +G  + GQLG    GK I  A        +V
Sbjct: 175 IMYNGQPITKMACGAEFSMIMDCKGNLYSFGCPEYGQLGHNSDGKFIARAQRIEYDCELV 234

Query: 163 PSRVEALAGEK-------------IVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGK 209
           P RV A+  EK             +  V+ G  H L      ++F WG+   GR+G+  +
Sbjct: 235 PRRV-AIFIEKTKDGQILPVPNVVVRDVACGANHTLVLDSQKRVFSWGFGGYGRLGHAEQ 293

Query: 210 ALESSP 215
             E  P
Sbjct: 294 KDEMVP 299


>gi|292628008|ref|XP_694032.3| PREDICTED: secretion-regulating guanine nucleotide exchange factor
           [Danio rerio]
          Length = 448

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 83/313 (26%), Positives = 132/313 (42%), Gaps = 46/313 (14%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAW 88
           V++ G  + G LG+    T     + EP  +      VTSV+AG  H+LA T +G V+ W
Sbjct: 169 VLACGSNAFGQLGVSAEKT----HSAEPLLLKSFHEPVTSVAAGLRHALASTASGCVYQW 224

Query: 89  GR----NNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWG 144
           G     + +  L    + S  +  +P  V G   V      A     + +  +G +++WG
Sbjct: 225 GTGLSSHAKRMLNPQPVPSHLSSKEPCLVPGFAHVTTQKVIAGSAHCACLTVNGDVFLWG 284

Query: 145 KSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRI 204
            +K GQL  G       V      L  E++  V  GW H +AQTE G++F WG S  G++
Sbjct: 285 SNKHGQLISGSLFLPLPVALDRSMLQDERVSDVHSGWTHLVAQTESGRVFTWGRSNYGQL 344

Query: 205 GNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGV 264
           G    ++E    D ++ RS    + +  +T                              
Sbjct: 345 GQTDHSMEKQSSDEHLVRSPVEVKALFGAT------------------------------ 374

Query: 265 EVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGR-EKQDMGM---FPVDINFHPVSISSG 320
               I+CG +H+L +   G + S G N +G  G    QD+      P   +   + I  G
Sbjct: 375 ---QISCGSEHNLAV-VGGRVFSWGWNEHGMCGDGSLQDITQPQPIPALADAVALLIGCG 430

Query: 321 LGHSLAICEVRSS 333
            GHS+A+C ++SS
Sbjct: 431 AGHSMALCSLKSS 443



 Score = 64.3 bits (155), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 88/382 (23%), Positives = 157/382 (41%), Gaps = 48/382 (12%)

Query: 3   LLKSVVHNHVNVLTSRIFMRSASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRV-PG 61
           +L+ V+   +N++      +  S   + ++G  S G LG      G   D  EP R   G
Sbjct: 40  ILRHVISWRLNLMEGDQLSKCVS--LLYTWGANSYGQLG-----QGNAEDQAEPRRAESG 92

Query: 62  LPSD-VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRG-ALESRATWNDPKRVEGLDQV 119
           L  + + +V+ G  HS  ++++G +   G+N++ QLG G  LE       P    G  Q 
Sbjct: 93  LQEEQIRAVTGGGGHSALISDSGELLVCGQNHKGQLGLGHTLEIMTFQTCPLPGFGRVQQ 152

Query: 120 NVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSF 179
             C    + +++     DG +   G +  GQLG+  + T +  P  +++   E +  V+ 
Sbjct: 153 VSCGWDFTIILTG----DGLVLACGSNAFGQLGVSAEKTHSAEPLLLKSFH-EPVTSVAA 207

Query: 180 GWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQ 239
           G  HALA T  G ++ WG    G   +  + L   P+ S++  SS+    +        Q
Sbjct: 208 GLRHALASTASGCVYQWG---TGLSSHAKRMLNPQPVPSHL--SSKEPCLVPGFAHVTTQ 262

Query: 240 KLVSEGME--------------KEKY-----------MPIIWEPFLVEGVEVVDIACGFD 274
           K+++                    K+           +P+  +  +++   V D+  G+ 
Sbjct: 263 KVIAGSAHCACLTVNGDVFLWGSNKHGQLISGSLFLPLPVALDRSMLQDERVSDVHSGWT 322

Query: 275 HSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINF--HPVSISSGLGHSLAICEVRS 332
           H +    +G + + G + YGQLG+    M     D +    PV + +  G +   C    
Sbjct: 323 HLVAQTESGRVFTWGRSNYGQLGQTDHSMEKQSSDEHLVRSPVEVKALFGATQISCGSEH 382

Query: 333 SNVTGGARGIVSWGWNRSSQLG 354
           +    G R + SWGWN     G
Sbjct: 383 NLAVVGGR-VFSWGWNEHGMCG 403



 Score = 62.8 bits (151), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 69/229 (30%), Positives = 102/229 (44%), Gaps = 56/229 (24%)

Query: 140 LWVWGKSKRGQLGLGKDITEAIVPSRVEA-LAGEKIVKVSFGWGHALAQTEDGKLFGWGY 198
           L+ WG +  GQLG G    +A  P R E+ L  E+I  V+ G GH+   ++ G+L   G 
Sbjct: 64  LYTWGANSYGQLGQGNAEDQA-EPRRAESGLQEEQIRAVTGGGGHSALISDSGELLVCGQ 122

Query: 199 SADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEP 258
           +  G++G LG  LE                      I   Q     G  +          
Sbjct: 123 NHKGQLG-LGHTLE----------------------IMTFQTCPLPGFGR---------- 149

Query: 259 FLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLG--REKQDMGMFPVDINFH-PV 315
                  V  ++CG+D +++L  +G++L+CGSN +GQLG   EK       +  +FH PV
Sbjct: 150 -------VQQVSCGWDFTIILTGDGLVLACGSNAFGQLGVSAEKTHSAEPLLLKSFHEPV 202

Query: 316 -SISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRM-GPDNVP 362
            S+++GL H+LA      S  +G    +  WG   SS   RM  P  VP
Sbjct: 203 TSVAAGLRHALA------STASG---CVYQWGTGLSSHAKRMLNPQPVP 242


>gi|403263478|ref|XP_003924058.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC3 [Saimiri
           boliviensis boliviensis]
          Length = 1050

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 70/248 (28%), Positives = 116/248 (46%), Gaps = 21/248 (8%)

Query: 66  VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAF 125
           +  V+ G  HSLA+++ G +++WG  ++ QLG    E       P+ ++ L+Q  +    
Sbjct: 86  IIHVACGESHSLALSDRGQLFSWGAGSDGQLGLMTTEDSVAV--PRLIQKLNQQTILQVS 143

Query: 126 ASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHAL 185
                  A+  DG  + WGK+  GQLGLGK+      P RV +L G  + +V+ G  H+ 
Sbjct: 144 CGNWHCLALAADGQFFTWGKNSHGQLGLGKEFPSQASPQRVRSLEGIPLAQVAAGGAHSF 203

Query: 186 AQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSE----SDQEISSSTIEKAQKL 241
           A +  G +FGWG +  G++G   +    SP    + R+ +    S  E  ++ + K+  +
Sbjct: 204 ALSLSGAVFGWGMNNAGQLGLSDEKDRESPCHVKLLRTQKVVYISCGEEHTAVLTKSGGV 263

Query: 242 VSEG-----------MEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVL-GRNGVLLSCG 289
            + G           M  E     + E   + G EV  IACG  H+L     +G++ + G
Sbjct: 264 FTFGAGSCGQLGHDSMNDEVNPRRVLE---LMGSEVTQIACGRQHTLAFVPSSGLIYAFG 320

Query: 290 SNVYGQLG 297
               GQLG
Sbjct: 321 CGARGQLG 328



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 37/115 (32%), Positives = 60/115 (52%), Gaps = 20/115 (17%)

Query: 266 VVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDI----NFHPVSISSGL 321
           V ++ACG +HS+ L  +G + +CG N  GQLG E++  G  P  I    + H + ++ G 
Sbjct: 36  VKEVACGGNHSVFLLEDGEVYTCGLNTKGQLGHERE--GNKPEQIGALADQHIIHVACGE 93

Query: 322 GHSLAICEVRSSNVTGGARG-IVSWGWNRSSQLGRMGPDN---VPLVVEGLEGES 372
            HSLA+ +          RG + SWG     QLG M  ++   VP +++ L  ++
Sbjct: 94  SHSLALSD----------RGQLFSWGAGSDGQLGLMTTEDSVAVPRLIQKLNQQT 138


>gi|355715935|gb|AES05448.1| regulator of chromosome condensation 2 [Mustela putorius furo]
          Length = 426

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 82/293 (27%), Positives = 129/293 (44%), Gaps = 35/293 (11%)

Query: 75  HSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAI 134
           HSL +T  G +W+WGRN + QLG G  +       PK +EGL    + +A      + A+
Sbjct: 92  HSLLITTEGKLWSWGRNEKGQLGHGDTKRVEA---PKLIEGLSHEVIVSAACGRNHTLAL 148

Query: 135 GDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLF 194
            + GS+  +G++K GQLGLG        P+++    G+ I K++ G   ++     G L+
Sbjct: 149 TETGSVLAFGENKMGQLGLGNQTDAVPSPAQI-MYNGQPITKMACGAEFSMIMDCKGNLY 207

Query: 195 GWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPI 254
            +G    G++G+            N D    +  +      E   + V+  +EK K   I
Sbjct: 208 SFGCPEYGQLGH------------NSDGKFIARAQRIEYDCELVPRRVAIFIEKTKDGQI 255

Query: 255 IWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFHP 314
           +  P +V    V D+ACG +H+LVL     + S G   YG+LG  +Q   M P  +    
Sbjct: 256 LPVPNVV----VRDVACGANHTLVLDSQKRVFSWGFGGYGRLGHAEQKDEMVPRLVKLFD 311

Query: 315 V------SISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPDNV 361
                   I +G   S A+ EV          G+  WG   +S+   M P  V
Sbjct: 312 FPGRGASQIYAGYTCSFAVSEV---------GGLFFWGATNTSRESTMYPKAV 355



 Score = 52.0 bits (123), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 56/186 (30%), Positives = 79/186 (42%), Gaps = 31/186 (16%)

Query: 56  PTRVPGLPSDV-TSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVE 114
           P  + GL  +V  S + G  H+LA+T  G+V A+G N   QLG G      T   P   +
Sbjct: 124 PKLIEGLSHEVIVSAACGRNHTLALTETGSVLAFGENKMGQLGLG----NQTDAVPSPAQ 179

Query: 115 GLDQVNVCAAFASGVVSSAIGD-DGSLWVWGKSKRGQLGL---GKDITEA--------IV 162
            +         A G   S I D  G+L+ +G  + GQLG    GK I  A        +V
Sbjct: 180 IMYNGQPITKMACGAEFSMIMDCKGNLYSFGCPEYGQLGHNSDGKFIARAQRIEYDCELV 239

Query: 163 PSRVEALAGEK-------------IVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGK 209
           P RV A+  EK             +  V+ G  H L      ++F WG+   GR+G+  +
Sbjct: 240 PRRV-AIFIEKTKDGQILPVPNVVVRDVACGANHTLVLDSQKRVFSWGFGGYGRLGHAEQ 298

Query: 210 ALESSP 215
             E  P
Sbjct: 299 KDEMVP 304


>gi|359319092|ref|XP_544537.3| PREDICTED: protein RCC2 [Canis lupus familiaris]
          Length = 460

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 82/293 (27%), Positives = 129/293 (44%), Gaps = 35/293 (11%)

Query: 75  HSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAI 134
           HSL +T  G +W+WGRN + QLG G  +       PK +EGL    + +A      + A+
Sbjct: 99  HSLLITTEGKLWSWGRNEKGQLGHGDTKRVEA---PKLIEGLSHEVIVSAACGRNHTLAL 155

Query: 135 GDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLF 194
            + GS+  +G++K GQLGLG        P+++    G+ I K++ G   ++     G L+
Sbjct: 156 TETGSVLAFGENKMGQLGLGNQTDAVPSPAQI-MYNGQPITKMACGAEFSMIMDCKGNLY 214

Query: 195 GWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPI 254
            +G    G++G+            N D    +  +      E   + V+  +EK K   I
Sbjct: 215 SFGCPEYGQLGH------------NSDGKFIARAQRIEYDCELVPRRVAIFIEKTKDGQI 262

Query: 255 IWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFHP 314
           +  P +V    V D+ACG +H+LVL     + S G   YG+LG  +Q   M P  +    
Sbjct: 263 LPVPNVV----VRDVACGANHTLVLDSQKRVFSWGFGGYGRLGHAEQKDEMVPRLVKLFD 318

Query: 315 V------SISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPDNV 361
                   I +G   S A+ EV          G+  WG   +S+   M P  V
Sbjct: 319 FPGRGASQIYAGYTCSFAVSEV---------GGLFFWGATNTSRESTMYPKAV 362



 Score = 52.4 bits (124), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 56/186 (30%), Positives = 79/186 (42%), Gaps = 31/186 (16%)

Query: 56  PTRVPGLPSDV-TSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVE 114
           P  + GL  +V  S + G  H+LA+T  G+V A+G N   QLG G      T   P   +
Sbjct: 131 PKLIEGLSHEVIVSAACGRNHTLALTETGSVLAFGENKMGQLGLG----NQTDAVPSPAQ 186

Query: 115 GLDQVNVCAAFASGVVSSAIGD-DGSLWVWGKSKRGQLGL---GKDITEA--------IV 162
            +         A G   S I D  G+L+ +G  + GQLG    GK I  A        +V
Sbjct: 187 IMYNGQPITKMACGAEFSMIMDCKGNLYSFGCPEYGQLGHNSDGKFIARAQRIEYDCELV 246

Query: 163 PSRVEALAGEK-------------IVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGK 209
           P RV A+  EK             +  V+ G  H L      ++F WG+   GR+G+  +
Sbjct: 247 PRRV-AIFIEKTKDGQILPVPNVVVRDVACGANHTLVLDSQKRVFSWGFGGYGRLGHAEQ 305

Query: 210 ALESSP 215
             E  P
Sbjct: 306 KDEMVP 311


>gi|386780812|ref|NP_001248295.1| probable E3 ubiquitin-protein ligase HERC3 [Macaca mulatta]
 gi|355687450|gb|EHH26034.1| Putative E3 ubiquitin-protein ligase HERC3 [Macaca mulatta]
 gi|355749437|gb|EHH53836.1| Putative E3 ubiquitin-protein ligase HERC3 [Macaca fascicularis]
 gi|380817668|gb|AFE80708.1| putative E3 ubiquitin-protein ligase HERC3 [Macaca mulatta]
 gi|383408291|gb|AFH27359.1| putative E3 ubiquitin-protein ligase HERC3 [Macaca mulatta]
          Length = 1050

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 79/288 (27%), Positives = 130/288 (45%), Gaps = 23/288 (7%)

Query: 28  AVVSFGDGSQGALGLPTS-LTGVGGDAYEPTRVPGLPSD-VTSVSAGHYHSLAVTNNGAV 85
           +V    DG     GL T    G   +  +P ++  L    +  V+ G  HSLA+++ G +
Sbjct: 46  SVFLLEDGEVYTCGLNTKGQLGHEREGNKPEQIGALADQHIIHVACGESHSLALSDRGQL 105

Query: 86  WAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGK 145
           ++WG  ++ QLG    E       P+ ++ L+Q  +           A+  DG  + WGK
Sbjct: 106 FSWGAGSDGQLGLMTTEDSVAV--PRLIQKLNQQTILQVSCGNWHCLALAADGQFFTWGK 163

Query: 146 SKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIG 205
           +  GQLGLGK+      P RV +L G  + +V+ G  H+ A +  G +FGWG +  G++G
Sbjct: 164 NSHGQLGLGKEFPSQASPQRVRSLEGIPLAQVAAGGAHSFALSLSGAVFGWGMNNAGQLG 223

Query: 206 NLGKALESSPLDSNIDRSSE----SDQEISSSTIEKAQKLVSEG-----------MEKEK 250
              +    SP    + R+ +    S  E  ++ + K+  + + G           M  E 
Sbjct: 224 LSDEKDRESPCHVKLLRTQKVVYISCGEEHTAVLTKSGGVFTFGAGSCGQLGHDSMNDEV 283

Query: 251 YMPIIWEPFLVEGVEVVDIACGFDHSLVL-GRNGVLLSCGSNVYGQLG 297
               + E   + G EV  IACG  H+L     +G++ + G    GQLG
Sbjct: 284 NPRRVLE---LMGSEVTQIACGRQHTLAFVPSSGLIYAFGCGARGQLG 328



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 37/115 (32%), Positives = 60/115 (52%), Gaps = 20/115 (17%)

Query: 266 VVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDI----NFHPVSISSGL 321
           V ++ACG +HS+ L  +G + +CG N  GQLG E++  G  P  I    + H + ++ G 
Sbjct: 36  VKEVACGGNHSVFLLEDGEVYTCGLNTKGQLGHERE--GNKPEQIGALADQHIIHVACGE 93

Query: 322 GHSLAICEVRSSNVTGGARG-IVSWGWNRSSQLGRMGPDN---VPLVVEGLEGES 372
            HSLA+ +          RG + SWG     QLG M  ++   VP +++ L  ++
Sbjct: 94  SHSLALSD----------RGQLFSWGAGSDGQLGLMTTEDSVAVPRLIQKLNQQT 138


>gi|281344274|gb|EFB19858.1| hypothetical protein PANDA_001437 [Ailuropoda melanoleuca]
          Length = 1050

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 79/288 (27%), Positives = 130/288 (45%), Gaps = 23/288 (7%)

Query: 28  AVVSFGDGSQGALGLPTS-LTGVGGDAYEPTRVPGLPSD-VTSVSAGHYHSLAVTNNGAV 85
           +V    DG     GL T    G   +  +P ++  L    +  V+ G  HSLA+++ G +
Sbjct: 46  SVFLLEDGEVYTCGLNTKGQLGHEREGNKPEQIGALADQHIVHVACGESHSLALSDRGQL 105

Query: 86  WAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGK 145
           ++WG  ++ QLG    E       P+ ++ L+Q  +           A+  DG  + WGK
Sbjct: 106 FSWGAGSDGQLGLMTTEDSVAV--PRLIQKLNQQTILQVSCGNWHCLALAADGQFFTWGK 163

Query: 146 SKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIG 205
           +  GQLGLGK+      P RV +L G  + +V+ G  H+ A +  G +FGWG +  G++G
Sbjct: 164 NSHGQLGLGKEFPSQASPQRVRSLEGIPLAQVAAGGAHSFALSLSGAVFGWGMNNAGQLG 223

Query: 206 NLGKALESSPLDSNIDRSSE----SDQEISSSTIEKAQKLVSEG-----------MEKEK 250
              +    SP    + R+ +    S  E  ++ + K+  + + G           M  E 
Sbjct: 224 LSDEEDRESPCHVKLLRTQKVVYISCGEEHTAVLTKSGGVFTFGAGSCGQLGHDSMNDEV 283

Query: 251 YMPIIWEPFLVEGVEVVDIACGFDHSLVL-GRNGVLLSCGSNVYGQLG 297
               + E   + G EV  IACG  H+L     +G++ + G    GQLG
Sbjct: 284 NPRRVLE---LMGSEVTQIACGRQHTLAFVPSSGLIYAFGCGARGQLG 328



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 95/330 (28%), Positives = 146/330 (44%), Gaps = 39/330 (11%)

Query: 39  ALGLPTSLTGVGGDAYEPTRVPGLPSD--VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQL 96
           +LG P   T + G   EP +V G  SD  V  V+ G  HS+ +  +G V+  G N + QL
Sbjct: 8   SLGQPGISTNLQGIVAEP-QVCGFISDRSVKEVACGGNHSVFLLEDGEVYTCGLNTKGQL 66

Query: 97  GRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKD 156
           G          N P+++  L   ++         S A+ D G L+ WG    GQLGL   
Sbjct: 67  GH-----EREGNKPEQIGALADQHIVHVACGESHSLALSDRGQLFSWGAGSDGQLGLMTT 121

Query: 157 ITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPL 216
                VP  ++ L  + I++VS G  H LA   DG+ F WG ++ G++G LGK   S   
Sbjct: 122 EDSVAVPRLIQKLNQQTILQVSCGNWHCLALAADGQFFTWGKNSHGQLG-LGKEFPSQAS 180

Query: 217 DSNIDRSSESDQEIS-------SSTIEKAQKLVSEGM----------EKEKYMPIIWEPF 259
              + RS E             S  +  +  +   GM          E+++  P   +  
Sbjct: 181 PQRV-RSLEGIPLAQVAAGGAHSFALSLSGAVFGWGMNNAGQLGLSDEEDRESPCHVK-- 237

Query: 260 LVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDI----NFHPV 315
           L+   +VV I+CG +H+ VL ++G + + G+   GQLG +  +  + P  +         
Sbjct: 238 LLRTQKVVYISCGEEHTAVLTKSGGVFTFGAGSCGQLGHDSMNDEVNPRRVLELMGSEVT 297

Query: 316 SISSGLGHSLAICEVRSSNVT----GGARG 341
            I+ G  H+LA   V SS +      GARG
Sbjct: 298 QIACGRQHTLAF--VPSSGLIYAFGCGARG 325



 Score = 62.4 bits (150), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 64/244 (26%), Positives = 103/244 (42%), Gaps = 70/244 (28%)

Query: 136 DDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFG 195
           +DG ++  G + +GQLG  +   E   P ++ ALA + IV V+ G  H+LA ++ G+LF 
Sbjct: 51  EDGEVYTCGLNTKGQLGHER---EGNKPEQIGALADQHIVHVACGESHSLALSDRGQLFS 107

Query: 196 WGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPII 255
           WG  +DG++G +                     E S +     QKL  +           
Sbjct: 108 WGAGSDGQLGLMTT-------------------EDSVAVPRLIQKLNQQ----------- 137

Query: 256 WEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFHPV 315
                     ++ ++CG  H L L  +G   + G N +GQLG  K+    FP   +   V
Sbjct: 138 ---------TILQVSCGNWHCLALAADGQFFTWGKNSHGQLGLGKE----FPSQASPQRV 184

Query: 316 ---------SISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLG------RMGPDN 360
                     +++G  HS A+      +++G   G   WG N + QLG      R  P +
Sbjct: 185 RSLEGIPLAQVAAGGAHSFAL------SLSGAVFG---WGMNNAGQLGLSDEEDRESPCH 235

Query: 361 VPLV 364
           V L+
Sbjct: 236 VKLL 239



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 38/115 (33%), Positives = 60/115 (52%), Gaps = 20/115 (17%)

Query: 266 VVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDI----NFHPVSISSGL 321
           V ++ACG +HS+ L  +G + +CG N  GQLG E++  G  P  I    + H V ++ G 
Sbjct: 36  VKEVACGGNHSVFLLEDGEVYTCGLNTKGQLGHERE--GNKPEQIGALADQHIVHVACGE 93

Query: 322 GHSLAICEVRSSNVTGGARG-IVSWGWNRSSQLGRMGPDN---VPLVVEGLEGES 372
            HSLA+ +          RG + SWG     QLG M  ++   VP +++ L  ++
Sbjct: 94  SHSLALSD----------RGQLFSWGAGSDGQLGLMTTEDSVAVPRLIQKLNQQT 138


>gi|27503689|gb|AAH42574.1| Hect domain and RLD 3 [Mus musculus]
          Length = 1050

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 68/252 (26%), Positives = 117/252 (46%), Gaps = 29/252 (11%)

Query: 66  VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAF 125
           +  V+ G  HSLA+++ G +++WG  ++ QLG    E       P+ ++ L+Q  +    
Sbjct: 86  IIHVACGESHSLALSDRGQLFSWGAGSDGQLGLMTTEDSVAV--PRLIQKLNQQTILQVS 143

Query: 126 ASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHAL 185
                  A+  DG  + WGK+  GQLGLGK+      P RV +L G  + +V+ G  H+ 
Sbjct: 144 CGNWHCLALAADGQFFTWGKNSHGQLGLGKEFPSQTSPQRVRSLEGIPLAQVAAGGAHSF 203

Query: 186 AQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSE----SDQEISSSTIEKA--- 238
           A +  G +FGWG +  G++G   +    SP    + R+ +    S  E  ++ + K+   
Sbjct: 204 ALSLSGAVFGWGMNNAGQLGLSDEKDRESPCHVKLLRTQKVVYISCGEEHTAVLTKSGGV 263

Query: 239 ------------QKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVL-GRNGVL 285
                          V++ +   + + ++       G EV  IACG  H+L L   +G++
Sbjct: 264 FTFGAGSCGQLGHDSVNDEVNPRRVLELM-------GSEVTQIACGRQHTLALVPSSGLI 316

Query: 286 LSCGSNVYGQLG 297
            + G    GQLG
Sbjct: 317 YAFGCGAKGQLG 328



 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 80/280 (28%), Positives = 126/280 (45%), Gaps = 29/280 (10%)

Query: 39  ALGLPTSLTGVGGDAYEPTRVPGLPSD--VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQL 96
           +LG P   + + G   EP +V    SD  +  V+ G  HS+ +  +G V+  G N + QL
Sbjct: 8   SLGQPGISSNLQGIVAEP-QVCRFVSDRSIKEVACGGNHSVFLLEDGEVYTCGVNTKGQL 66

Query: 97  GRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKD 156
           G          N P+++  L   ++         S A+ D G L+ WG    GQLGL   
Sbjct: 67  GH-----EREGNKPEQIGALADQHIIHVACGESHSLALSDRGQLFSWGAGSDGQLGLMTT 121

Query: 157 ITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPL 216
                VP  ++ L  + I++VS G  H LA   DG+ F WG ++ G++G LGK   S   
Sbjct: 122 EDSVAVPRLIQKLNQQTILQVSCGNWHCLALAADGQFFTWGKNSHGQLG-LGKEFPSQTS 180

Query: 217 DSNIDRSSESDQEIS-------SSTIEKAQKLVSEGM----------EKEKYMPIIWEPF 259
              + RS E             S  +  +  +   GM          EK++  P   +  
Sbjct: 181 PQRV-RSLEGIPLAQVAAGGAHSFALSLSGAVFGWGMNNAGQLGLSDEKDRESPCHVK-- 237

Query: 260 LVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGRE 299
           L+   +VV I+CG +H+ VL ++G + + G+   GQLG +
Sbjct: 238 LLRTQKVVYISCGEEHTAVLTKSGGVFTFGAGSCGQLGHD 277


>gi|330837741|ref|YP_004412382.1| hypothetical protein [Sphaerochaeta coccoides DSM 17374]
 gi|329749644|gb|AEC03000.1| hypothetical protein Spico_1802 [Sphaerochaeta coccoides DSM 17374]
          Length = 733

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 81/279 (29%), Positives = 130/279 (46%), Gaps = 41/279 (14%)

Query: 48  GVGG--DAYEPTRVPGLPSD------VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRG 99
           G+GG  D   P +V    +D      V +VSAG  H++ +  +G +WA G N   QLG G
Sbjct: 451 GIGGTTDISTPEQVKASTADNDFMTNVKAVSAGQEHTMILKKDGTLWATGDNQHGQLGIG 510

Query: 100 ALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITE 159
             E++ T   P  V  +    V A FA  + +  +  +G+LW  G +  GQLG+G   T+
Sbjct: 511 NYEAKDT---PVPVSSMGN-QVAAVFAGELHTMILKKNGTLWATGYNASGQLGIGG-TTD 565

Query: 160 AIVPSRVEALAG----EKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSP 215
              P +V+ L G      +  VS GW H +    DG L+  G +  G++G      + +P
Sbjct: 566 ISTPEQVKGLGGAGVMTDVAAVSAGWKHTMILKTDGTLWATGDNQHGQLGIGNYEAKDTP 625

Query: 216 LDSNIDRSSESDQ-------EISSSTIEKAQKLVSEGMEK----------EKYMPIIWEP 258
               +  SS  +Q       E  +  ++K   L + G  +          +K  P+   P
Sbjct: 626 ----VPVSSMGNQVAAVFAGEEYTMILKKDGTLWATGSNQFGRLGVGDYADKDTPV---P 678

Query: 259 FLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLG 297
               G +V D++ G+ H+++L ++G L + G N YGQLG
Sbjct: 679 VSSMGSDVKDVSAGYGHTMILKKDGTLWATGDNEYGQLG 717



 Score = 74.7 bits (182), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 56/166 (33%), Positives = 87/166 (52%), Gaps = 13/166 (7%)

Query: 48  GVGG--DAYEPTRVPGL-----PSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGA 100
           G+GG  D   P +V GL      +DV +VSAG  H++ +  +G +WA G N   QLG G 
Sbjct: 559 GIGGTTDISTPEQVKGLGGAGVMTDVAAVSAGWKHTMILKTDGTLWATGDNQHGQLGIGN 618

Query: 101 LESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEA 160
            E++ T   P  V  +    V A FA    +  +  DG+LW  G ++ G+LG+G D  + 
Sbjct: 619 YEAKDT---PVPVSSMGN-QVAAVFAGEEYTMILKKDGTLWATGSNQFGRLGVG-DYADK 673

Query: 161 IVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGN 206
             P  V ++ G  +  VS G+GH +   +DG L+  G +  G++G+
Sbjct: 674 DTPVPVSSM-GSDVKDVSAGYGHTMILKKDGTLWATGDNEYGQLGD 718



 Score = 71.2 bits (173), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 73/282 (25%), Positives = 122/282 (43%), Gaps = 34/282 (12%)

Query: 58  RVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLD 117
             P +   V SVSAG YH++ +  +G +W  G N+  +LG G          P +V    
Sbjct: 352 NAPAVKLGVRSVSAGGYHTMILKTDGTLWGVGYNDNGELGIGTSGDMGNERTPVQVWDST 411

Query: 118 Q-----VNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGE 172
                  NV A  A    +  +  DG+LW  G +  GQLG+G   T+   P +V+A   +
Sbjct: 412 NGSRFMTNVAAVSAGWDYTMILKKDGTLWGTGHNYYGQLGIGG-TTDISTPEQVKASTAD 470

Query: 173 -----KIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESD 227
                 +  VS G  H +   +DG L+  G +  G++G      + +P    +  SS  +
Sbjct: 471 NDFMTNVKAVSAGQEHTMILKKDGTLWATGDNQHGQLGIGNYEAKDTP----VPVSSMGN 526

Query: 228 Q-------EISSSTIEKAQKLVSEGMEKEKYMPI-----IWEPFLVEGV-------EVVD 268
           Q       E+ +  ++K   L + G      + I     I  P  V+G+       +V  
Sbjct: 527 QVAAVFAGELHTMILKKNGTLWATGYNASGQLGIGGTTDISTPEQVKGLGGAGVMTDVAA 586

Query: 269 IACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDI 310
           ++ G+ H+++L  +G L + G N +GQLG    +    PV +
Sbjct: 587 VSAGWKHTMILKTDGTLWATGDNQHGQLGIGNYEAKDTPVPV 628



 Score = 42.7 bits (99), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 37/126 (29%), Positives = 57/126 (45%), Gaps = 17/126 (13%)

Query: 33  GDGSQGALGLPTSLTGVGGDAYE----PTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAW 88
           GD   G LG+           YE    P  V  + + V +V AG  +++ +  +G +WA 
Sbjct: 607 GDNQHGQLGIGN---------YEAKDTPVPVSSMGNQVAAVFAGEEYTMILKKDGTLWAT 657

Query: 89  GRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKR 148
           G N   +LG G    + T   P    G D  +V A +   ++   +  DG+LW  G ++ 
Sbjct: 658 GSNQFGRLGVGDYADKDT-PVPVSSMGSDVKDVSAGYGHTMI---LKKDGTLWATGDNEY 713

Query: 149 GQLGLG 154
           GQLG G
Sbjct: 714 GQLGDG 719



 Score = 39.7 bits (91), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 24/55 (43%), Positives = 33/55 (60%), Gaps = 2/55 (3%)

Query: 48  GVGGDAYEPTRVP--GLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGA 100
           GVG  A + T VP   + SDV  VSAG+ H++ +  +G +WA G N   QLG G+
Sbjct: 666 GVGDYADKDTPVPVSSMGSDVKDVSAGYGHTMILKKDGTLWATGDNEYGQLGDGS 720


>gi|426255638|ref|XP_004021455.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC4 isoform 1
           [Ovis aries]
          Length = 1057

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 64/245 (26%), Positives = 114/245 (46%), Gaps = 43/245 (17%)

Query: 55  EPTRVPGLPS-DVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRV 113
           +P +V  L + ++ +VS G  H+LA+ + G V+AWG +++ QLG   L S      P+ +
Sbjct: 74  KPEQVVALDAQNIVAVSCGEAHTLALNDKGQVYAWGLDSDGQLG--LLGSEECIRVPRNI 131

Query: 114 EGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEK 173
           + L  + +         S A+     ++ WG++K GQLGLG D  +   P  +++L G  
Sbjct: 132 KSLSDIQIVQVACGYYHSLALSKASEVFCWGQNKYGQLGLGIDCKKQASPQLIKSLLGIP 191

Query: 174 IVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSS 233
            ++++ G  H+   T  G +FGWG +  G++G          L+                
Sbjct: 192 FMQIAAGGAHSFVLTLSGAIFGWGRNKFGQLG----------LND--------------- 226

Query: 234 TIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVY 293
                        E ++Y+P + +    +  ++V I CG DH+  L + G + + G+  Y
Sbjct: 227 -------------ENDRYVPNLLKSLRTQ--KIVYICCGEDHTAALTKEGGVFTFGAGGY 271

Query: 294 GQLGR 298
           GQLG 
Sbjct: 272 GQLGH 276



 Score = 78.2 bits (191), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 60/192 (31%), Positives = 99/192 (51%), Gaps = 16/192 (8%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVP-GLPS----DVTSVSAGHYHSLAVTNNG 83
           V ++G  S G LGL      +G +  E  RVP  + S     +  V+ G+YHSLA++   
Sbjct: 105 VYAWGLDSDGQLGL------LGSE--ECIRVPRNIKSLSDIQIVQVACGYYHSLALSKAS 156

Query: 84  AVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVW 143
            V+ WG+N   QLG G    +     P+ ++ L  +      A G  S  +   G+++ W
Sbjct: 157 EVFCWGQNKYGQLGLGIDCKKQA--SPQLIKSLLGIPFMQIAAGGAHSFVLTLSGAIFGW 214

Query: 144 GKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGR 203
           G++K GQLGL  D  +  VP+ +++L  +KIV +  G  H  A T++G +F +G    G+
Sbjct: 215 GRNKFGQLGLN-DENDRYVPNLLKSLRTQKIVYICCGEDHTAALTKEGGVFTFGAGGYGQ 273

Query: 204 IGNLGKALESSP 215
           +G+   + E +P
Sbjct: 274 LGHNSTSHEINP 285



 Score = 72.0 bits (175), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 69/273 (25%), Positives = 111/273 (40%), Gaps = 57/273 (20%)

Query: 87  AWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKS 146
            WG  +  QLG G ++      +P++ +      V         +  + DDG+++  G +
Sbjct: 3   CWGNASFGQLGLGGIDEEIVL-EPRKSDFFVNKKVRDVGCGLRHTVFVLDDGTVYTCGCN 61

Query: 147 KRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGN 206
             GQLG  K   +   P +V AL  + IV VS G  H LA  + G+++ WG  +DG++G 
Sbjct: 62  DLGQLGHEKSRKK---PEQVVALDAQNIVAVSCGEAHTLALNDKGQVYAWGLDSDGQLGL 118

Query: 207 LGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEV 266
           LG   E   +  NI   S+                                      +++
Sbjct: 119 LGSE-ECIRVPRNIKSLSD--------------------------------------IQI 139

Query: 267 VDIACGFDHSLVLGRNGVLLSCGSNVYGQLG-----REKQDMGMFPVDINFHPVSISSGL 321
           V +ACG+ HSL L +   +   G N YGQLG     +++    +    +    + I++G 
Sbjct: 140 VQVACGYYHSLALSKASEVFCWGQNKYGQLGLGIDCKKQASPQLIKSLLGIPFMQIAAGG 199

Query: 322 GHSLAICEVRSSNVTGGARGIVSWGWNRSSQLG 354
            HS  +          GA  I  WG N+  QLG
Sbjct: 200 AHSFVL-------TLSGA--IFGWGRNKFGQLG 223


>gi|296196017|ref|XP_002745644.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC3 isoform 2
           [Callithrix jacchus]
          Length = 1050

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 70/248 (28%), Positives = 116/248 (46%), Gaps = 21/248 (8%)

Query: 66  VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAF 125
           +  V+ G  HSLA+++ G +++WG  ++ QLG    E       P+ ++ L+Q  +    
Sbjct: 86  IIHVACGESHSLALSDRGQLFSWGAGSDGQLGLMTTEDSVAV--PRLIQKLNQQTILQVS 143

Query: 126 ASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHAL 185
                  A+  DG  + WGK+  GQLGLGK+      P RV +L G  + +V+ G  H+ 
Sbjct: 144 CGNWHCLALAADGQFFTWGKNSHGQLGLGKEFPSQASPQRVRSLEGIPLAQVAAGGAHSF 203

Query: 186 AQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSE----SDQEISSSTIEKAQKL 241
           A +  G +FGWG +  G++G   +    SP    + R+ +    S  E  ++ + K+  +
Sbjct: 204 ALSLSGAVFGWGMNNAGQLGLSDEKDRESPCHVKLLRTQKVVYISCGEEHTAVLTKSGGV 263

Query: 242 VSEG-----------MEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVL-GRNGVLLSCG 289
            + G           M  E     + E   + G EV  IACG  H+L     +G++ + G
Sbjct: 264 FTFGAGSCGQLGHDSMNDEVNPRRVLE---LMGSEVTQIACGRQHTLAFVPSSGLIYAFG 320

Query: 290 SNVYGQLG 297
               GQLG
Sbjct: 321 CGARGQLG 328



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 37/115 (32%), Positives = 60/115 (52%), Gaps = 20/115 (17%)

Query: 266 VVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDI----NFHPVSISSGL 321
           V ++ACG +HS+ L  +G + +CG N  GQLG E++  G  P  I    + H + ++ G 
Sbjct: 36  VKEVACGGNHSVFLLEDGEVYTCGLNTKGQLGHERE--GNKPEQIGALADQHIIHVACGE 93

Query: 322 GHSLAICEVRSSNVTGGARG-IVSWGWNRSSQLGRMGPDN---VPLVVEGLEGES 372
            HSLA+ +          RG + SWG     QLG M  ++   VP +++ L  ++
Sbjct: 94  SHSLALSD----------RGQLFSWGAGSDGQLGLMTTEDSVAVPRLIQKLNQQT 138


>gi|440895825|gb|ELR47919.1| Putative E3 ubiquitin-protein ligase HERC4 [Bos grunniens mutus]
          Length = 1056

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 64/245 (26%), Positives = 114/245 (46%), Gaps = 43/245 (17%)

Query: 55  EPTRVPGLPS-DVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRV 113
           +P +V  L + ++ +VS G  H+LA+ + G V+AWG +++ QLG   L S      P+ +
Sbjct: 74  KPEQVVALDAQNIVAVSCGEAHTLALNDKGQVYAWGLDSDGQLG--LLGSEECIRVPRNI 131

Query: 114 EGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEK 173
           + L  + +         S A+     ++ WG++K GQLGLG D  +   P  +++L G  
Sbjct: 132 KSLSDIQIVQVACGYYHSLALSKASEVFCWGQNKYGQLGLGIDCKKQASPQLIKSLLGIP 191

Query: 174 IVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSS 233
            ++++ G  H+   T  G +FGWG +  G++G          L+                
Sbjct: 192 FMQIAAGGAHSFVLTLSGAIFGWGRNKFGQLG----------LND--------------- 226

Query: 234 TIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVY 293
                        E ++Y+P + +    +  ++V I CG DH+  L + G + + G+  Y
Sbjct: 227 -------------ENDRYVPNLLKSLRTQ--KIVYICCGEDHTAALTKEGGVFTFGAGGY 271

Query: 294 GQLGR 298
           GQLG 
Sbjct: 272 GQLGH 276



 Score = 78.2 bits (191), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 60/192 (31%), Positives = 99/192 (51%), Gaps = 16/192 (8%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVP-GLPS----DVTSVSAGHYHSLAVTNNG 83
           V ++G  S G LGL      +G +  E  RVP  + S     +  V+ G+YHSLA++   
Sbjct: 105 VYAWGLDSDGQLGL------LGSE--ECIRVPRNIKSLSDIQIVQVACGYYHSLALSKAS 156

Query: 84  AVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVW 143
            V+ WG+N   QLG G    +     P+ ++ L  +      A G  S  +   G+++ W
Sbjct: 157 EVFCWGQNKYGQLGLGIDCKKQA--SPQLIKSLLGIPFMQIAAGGAHSFVLTLSGAIFGW 214

Query: 144 GKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGR 203
           G++K GQLGL  D  +  VP+ +++L  +KIV +  G  H  A T++G +F +G    G+
Sbjct: 215 GRNKFGQLGLN-DENDRYVPNLLKSLRTQKIVYICCGEDHTAALTKEGGVFTFGAGGYGQ 273

Query: 204 IGNLGKALESSP 215
           +G+   + E +P
Sbjct: 274 LGHNSTSHEINP 285



 Score = 72.0 bits (175), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 69/273 (25%), Positives = 111/273 (40%), Gaps = 57/273 (20%)

Query: 87  AWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKS 146
            WG  +  QLG G ++      +P++ +      V         +  + DDG+++  G +
Sbjct: 3   CWGNASFGQLGLGGIDEEIVL-EPRKSDFFINKKVRDVGCGLRHTVFVLDDGTVYTCGCN 61

Query: 147 KRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGN 206
             GQLG  K   +   P +V AL  + IV VS G  H LA  + G+++ WG  +DG++G 
Sbjct: 62  DLGQLGHEKSRKK---PEQVVALDAQNIVAVSCGEAHTLALNDKGQVYAWGLDSDGQLGL 118

Query: 207 LGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEV 266
           LG   E   +  NI   S+                                      +++
Sbjct: 119 LGSE-ECIRVPRNIKSLSD--------------------------------------IQI 139

Query: 267 VDIACGFDHSLVLGRNGVLLSCGSNVYGQLG-----REKQDMGMFPVDINFHPVSISSGL 321
           V +ACG+ HSL L +   +   G N YGQLG     +++    +    +    + I++G 
Sbjct: 140 VQVACGYYHSLALSKASEVFCWGQNKYGQLGLGIDCKKQASPQLIKSLLGIPFMQIAAGG 199

Query: 322 GHSLAICEVRSSNVTGGARGIVSWGWNRSSQLG 354
            HS  +          GA  I  WG N+  QLG
Sbjct: 200 AHSFVL-------TLSGA--IFGWGRNKFGQLG 223


>gi|417405695|gb|JAA49551.1| Putative e3 ubiquitin-protein ligase herc3 [Desmodus rotundus]
          Length = 1050

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 79/288 (27%), Positives = 130/288 (45%), Gaps = 23/288 (7%)

Query: 28  AVVSFGDGSQGALGLPTS-LTGVGGDAYEPTRVPGLPSD-VTSVSAGHYHSLAVTNNGAV 85
           +V    DG     GL T    G   +  +P ++  L    +  V+ G  HSLA+++ G +
Sbjct: 46  SVFLLEDGEVYTCGLNTKGQLGHEREGNKPEQIGALADQHIVHVACGESHSLALSDRGQL 105

Query: 86  WAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGK 145
           ++WG  ++ QLG    E       P+ ++ L+Q  +           A+  DG  + WGK
Sbjct: 106 FSWGAGSDGQLGLMTTEDSVAV--PRLIQKLNQQTILQVSCGNWHCLALAADGQFFTWGK 163

Query: 146 SKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIG 205
           +  GQLGLGK+      P RV +L G  + +V+ G  H+ A +  G +FGWG +  G++G
Sbjct: 164 NSHGQLGLGKEFPSQASPQRVRSLEGIPLAQVAAGGAHSFALSLSGAVFGWGMNNAGQLG 223

Query: 206 NLGKALESSPLDSNIDRSSE----SDQEISSSTIEKAQKLVSEG-----------MEKEK 250
              +    SP    + R+ +    S  E  ++ + K+  + + G           M  E 
Sbjct: 224 LSDEEDRESPCHVKLLRTQKVVYISCGEEHTAVLTKSGGVFTFGAGSCGQLGHDSMNDEV 283

Query: 251 YMPIIWEPFLVEGVEVVDIACGFDHSLVL-GRNGVLLSCGSNVYGQLG 297
               + E   + G EV  IACG  H+L     +G++ + G    GQLG
Sbjct: 284 NPRRVLE---LMGSEVTQIACGRQHTLAFVPSSGLIYAFGCGARGQLG 328



 Score = 83.6 bits (205), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 95/330 (28%), Positives = 146/330 (44%), Gaps = 39/330 (11%)

Query: 39  ALGLPTSLTGVGGDAYEPTRVPGLPSD--VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQL 96
           +LG P   T + G   EP +V G  SD  V  V+ G  HS+ +  +G V+  G N + QL
Sbjct: 8   SLGQPGISTNLQGIVAEP-QVCGFISDRSVKEVACGGNHSVFLLEDGEVYTCGLNTKGQL 66

Query: 97  GRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKD 156
           G          N P+++  L   ++         S A+ D G L+ WG    GQLGL   
Sbjct: 67  GH-----EREGNKPEQIGALADQHIVHVACGESHSLALSDRGQLFSWGAGSDGQLGLMTT 121

Query: 157 ITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPL 216
                VP  ++ L  + I++VS G  H LA   DG+ F WG ++ G++G LGK   S   
Sbjct: 122 EDSVAVPRLIQKLNQQTILQVSCGNWHCLALAADGQFFTWGKNSHGQLG-LGKEFPSQAS 180

Query: 217 DSNIDRSSESDQEIS-------SSTIEKAQKLVSEGM----------EKEKYMPIIWEPF 259
              + RS E             S  +  +  +   GM          E+++  P   +  
Sbjct: 181 PQRV-RSLEGIPLAQVAAGGAHSFALSLSGAVFGWGMNNAGQLGLSDEEDRESPCHVK-- 237

Query: 260 LVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDI----NFHPV 315
           L+   +VV I+CG +H+ VL ++G + + G+   GQLG +  +  + P  +         
Sbjct: 238 LLRTQKVVYISCGEEHTAVLTKSGGVFTFGAGSCGQLGHDSMNDEVNPRRVLELMGSEVT 297

Query: 316 SISSGLGHSLAICEVRSSNVT----GGARG 341
            I+ G  H+LA   V SS +      GARG
Sbjct: 298 QIACGRQHTLAF--VPSSGLIYAFGCGARG 325



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 64/244 (26%), Positives = 103/244 (42%), Gaps = 70/244 (28%)

Query: 136 DDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFG 195
           +DG ++  G + +GQLG  +   E   P ++ ALA + IV V+ G  H+LA ++ G+LF 
Sbjct: 51  EDGEVYTCGLNTKGQLGHER---EGNKPEQIGALADQHIVHVACGESHSLALSDRGQLFS 107

Query: 196 WGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPII 255
           WG  +DG++G +                     E S +     QKL  +           
Sbjct: 108 WGAGSDGQLGLMTT-------------------EDSVAVPRLIQKLNQQ----------- 137

Query: 256 WEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFHPV 315
                     ++ ++CG  H L L  +G   + G N +GQLG  K+    FP   +   V
Sbjct: 138 ---------TILQVSCGNWHCLALAADGQFFTWGKNSHGQLGLGKE----FPSQASPQRV 184

Query: 316 ---------SISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLG------RMGPDN 360
                     +++G  HS A+      +++G   G   WG N + QLG      R  P +
Sbjct: 185 RSLEGIPLAQVAAGGAHSFAL------SLSGAVFG---WGMNNAGQLGLSDEEDRESPCH 235

Query: 361 VPLV 364
           V L+
Sbjct: 236 VKLL 239



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 38/115 (33%), Positives = 60/115 (52%), Gaps = 20/115 (17%)

Query: 266 VVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDI----NFHPVSISSGL 321
           V ++ACG +HS+ L  +G + +CG N  GQLG E++  G  P  I    + H V ++ G 
Sbjct: 36  VKEVACGGNHSVFLLEDGEVYTCGLNTKGQLGHERE--GNKPEQIGALADQHIVHVACGE 93

Query: 322 GHSLAICEVRSSNVTGGARG-IVSWGWNRSSQLGRMGPDN---VPLVVEGLEGES 372
            HSLA+ +          RG + SWG     QLG M  ++   VP +++ L  ++
Sbjct: 94  SHSLALSD----------RGQLFSWGAGSDGQLGLMTTEDSVAVPRLIQKLNQQT 138


>gi|402869928|ref|XP_003898995.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC3 isoform 1
           [Papio anubis]
          Length = 1050

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 79/288 (27%), Positives = 130/288 (45%), Gaps = 23/288 (7%)

Query: 28  AVVSFGDGSQGALGLPTS-LTGVGGDAYEPTRVPGLPSD-VTSVSAGHYHSLAVTNNGAV 85
           +V    DG     GL T    G   +  +P ++  L    +  V+ G  HSLA+++ G +
Sbjct: 46  SVFLLEDGEVYTCGLNTKGQLGHEREGNKPEQIGALADQHIIHVACGESHSLALSDRGQL 105

Query: 86  WAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGK 145
           ++WG  ++ QLG    E       P+ ++ L+Q  +           A+  DG  + WGK
Sbjct: 106 FSWGAGSDGQLGLMTTEDSVAV--PRLIQKLNQQTILQVSCGNWHCLALAADGQFFTWGK 163

Query: 146 SKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIG 205
           +  GQLGLGK+      P RV +L G  + +V+ G  H+ A +  G +FGWG +  G++G
Sbjct: 164 NSHGQLGLGKEFPSQASPQRVRSLEGIPLAQVAAGGAHSFALSLSGAVFGWGMNNAGQLG 223

Query: 206 NLGKALESSPLDSNIDRSSE----SDQEISSSTIEKAQKLVSEG-----------MEKEK 250
              +    SP    + R+ +    S  E  ++ + K+  + + G           M  E 
Sbjct: 224 LSDEKDRESPCHVKLLRTQKVVYISCGEEHTAVLTKSGGVFTFGAGSCGQLGHDSMNDEV 283

Query: 251 YMPIIWEPFLVEGVEVVDIACGFDHSLVL-GRNGVLLSCGSNVYGQLG 297
               + E   + G EV  IACG  H+L     +G++ + G    GQLG
Sbjct: 284 NPRRVLE---LMGSEVTQIACGRQHTLAFVPSSGLIYAFGCGARGQLG 328



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 37/115 (32%), Positives = 60/115 (52%), Gaps = 20/115 (17%)

Query: 266 VVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDI----NFHPVSISSGL 321
           V ++ACG +HS+ L  +G + +CG N  GQLG E++  G  P  I    + H + ++ G 
Sbjct: 36  VKEVACGGNHSVFLLEDGEVYTCGLNTKGQLGHERE--GNKPEQIGALADQHIIHVACGE 93

Query: 322 GHSLAICEVRSSNVTGGARG-IVSWGWNRSSQLGRMGPDN---VPLVVEGLEGES 372
            HSLA+ +          RG + SWG     QLG M  ++   VP +++ L  ++
Sbjct: 94  SHSLALSD----------RGQLFSWGAGSDGQLGLMTTEDSVAVPRLIQKLNQQT 138


>gi|332233510|ref|XP_003265945.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC3 isoform 1
           [Nomascus leucogenys]
          Length = 1050

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 79/288 (27%), Positives = 130/288 (45%), Gaps = 23/288 (7%)

Query: 28  AVVSFGDGSQGALGLPTS-LTGVGGDAYEPTRVPGLPSD-VTSVSAGHYHSLAVTNNGAV 85
           +V    DG     GL T    G   +  +P ++  L    +  V+ G  HSLA+++ G +
Sbjct: 46  SVFLLEDGEVYTCGLNTKGQLGHEREGNKPEQIGALADQHIIHVACGESHSLALSDRGQL 105

Query: 86  WAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGK 145
           ++WG  ++ QLG    E       P+ ++ L+Q  +           A+  DG  + WGK
Sbjct: 106 FSWGAGSDGQLGLMTTEDSVAV--PRLIQKLNQQTILQVSCGNWHCLALAADGQFFTWGK 163

Query: 146 SKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIG 205
           +  GQLGLGK+      P RV +L G  + +V+ G  H+ A +  G +FGWG +  G++G
Sbjct: 164 NSHGQLGLGKEFPSQASPQRVRSLEGIPLAQVAAGGAHSFALSLSGAVFGWGMNNAGQLG 223

Query: 206 NLGKALESSPLDSNIDRSSE----SDQEISSSTIEKAQKLVSEG-----------MEKEK 250
              +    SP    + R+ +    S  E  ++ + K+  + + G           M  E 
Sbjct: 224 LSDEKDRESPCHVKLLRTQKVVYISCGEEHTAVLTKSGGVFTFGAGSCGQLGHDSMNDEV 283

Query: 251 YMPIIWEPFLVEGVEVVDIACGFDHSLVL-GRNGVLLSCGSNVYGQLG 297
               + E   + G EV  IACG  H+L     +G++ + G    GQLG
Sbjct: 284 NPRRVLE---LMGSEVTQIACGRQHTLAFVPSSGLIYAFGCGARGQLG 328



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 37/115 (32%), Positives = 60/115 (52%), Gaps = 20/115 (17%)

Query: 266 VVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDI----NFHPVSISSGL 321
           V ++ACG +HS+ L  +G + +CG N  GQLG E++  G  P  I    + H + ++ G 
Sbjct: 36  VKEVACGGNHSVFLLEDGEVYTCGLNTKGQLGHERE--GNKPEQIGALADQHIIHVACGE 93

Query: 322 GHSLAICEVRSSNVTGGARG-IVSWGWNRSSQLGRMGPDN---VPLVVEGLEGES 372
            HSLA+ +          RG + SWG     QLG M  ++   VP +++ L  ++
Sbjct: 94  SHSLALSD----------RGQLFSWGAGSDGQLGLMTTEDSVAVPRLIQKLNQQT 138


>gi|220916168|ref|YP_002491472.1| chromosome condensation regulator RCC1 [Anaeromyxobacter
           dehalogenans 2CP-1]
 gi|219954022|gb|ACL64406.1| regulator of chromosome condensation RCC1 [Anaeromyxobacter
           dehalogenans 2CP-1]
          Length = 717

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 75/264 (28%), Positives = 119/264 (45%), Gaps = 15/264 (5%)

Query: 64  SDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCA 123
           S    V+AG  H  A+  +G+ WAWG ++  Q G G+    A         G     V A
Sbjct: 341 SGFAQVAAGSRHMAAIATDGSRWAWGNDDFGQAGDGSWSRSAV----ATQVGSGFARVAA 396

Query: 124 AFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGH 183
            F     S  +  DG+LW WG +  GQ G G D  +   P R+    GE   +V+ G+ H
Sbjct: 397 GFGH---SLGVKTDGTLWGWGLNDLGQAGDGTDAPQRGAPIRI----GEGFAEVAAGYQH 449

Query: 184 ALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVS 243
           +LA   DG L+ WG +  G++G    A  S+P       +  +     S+ ++    L  
Sbjct: 450 SLAVAADGTLWSWGSNFSGQLGVPSIAFRSTPGQIGSGFAHAAAGRWHSAGVKTDGTLWL 509

Query: 244 EGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDM 303
            G +          P  V G   V++A G +H++ L  +G L + G+N++GQL     D 
Sbjct: 510 WGGDVSGSFDT---PVQV-GSGFVEVAAGHEHTVALAEDGTLWTWGNNLFGQLCDGTLDQ 565

Query: 304 GMFPVDINFHPVSISSGLGHSLAI 327
            + PV +      +S+G  H++A+
Sbjct: 566 RVAPVQVGTGFTHVSAGAYHTMAM 589



 Score = 79.3 bits (194), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 90/332 (27%), Positives = 142/332 (42%), Gaps = 48/332 (14%)

Query: 31  SFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGR 90
           ++GD + G LG  T +     D   P R+    +   S +AG  ++LAV  +G +W+WG 
Sbjct: 67  AWGDNASGQLGDGTFV-----DRATPVRIG---TGFASAAAGTGYTLAVKADGTLWSWGD 118

Query: 91  NNEVQLGRGALESRATWNDPKRV-EGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRG 149
           N   QLG G    RA    P ++  G  QV     +    VS AI  DG+LW WG ++ G
Sbjct: 119 NASGQLGDGTTILRAA---PVQIGTGFAQVAASRNWLQ-PVSLAIKTDGTLWAWGSNRNG 174

Query: 150 QLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGK 209
           Q+G G  + +   P ++    G    +++ G  HA A   DG  + WG +  G++G+   
Sbjct: 175 QVGDGSGLDQH-APVQI----GTGFTRIAVGDWHAAAVKADGSAWTWGSNTSGQLGDGSI 229

Query: 210 AL--ESSPLDSNIDRSSESDQEISSSTI------------EKAQKLVSEGMEKEKYMPII 255
           A+   ++P+      S+      ++ T+                  + +G    +  P+ 
Sbjct: 230 AITPRTTPVQVLPASSAADVAAGAAHTVVLRSDGSLLAWGANGDGQLGDGTTTGRRTPVA 289

Query: 256 WEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFHPV 315
                +    VV IA   +H+  L  +G L +CG+N YGQLG      G F     F   
Sbjct: 290 -----MGFGGVVQIAATANHTAALRADGTLWTCGANEYGQLGD-----GTFASRSAF--T 337

Query: 316 SISSGLGHSLAICEVRSSNVTGGARGIVSWGW 347
            I SG     A     ++  T G+R    W W
Sbjct: 338 RIGSGFAQVAAGSRHMAAIATDGSR----WAW 365



 Score = 72.0 bits (175), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 76/270 (28%), Positives = 119/270 (44%), Gaps = 21/270 (7%)

Query: 69  VSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASG 128
           +SA   HS+A+  +G +WAWG N   QLG G    RAT   P R+         +A A  
Sbjct: 49  ISAPASHSVAIAKDGTLWAWGDNASGQLGDGTFVDRAT---PVRIG----TGFASAAAGT 101

Query: 129 VVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGH--ALA 186
             + A+  DG+LW WG +  GQLG G  I  A   + V+   G   V  S  W    +LA
Sbjct: 102 GYTLAVKADGTLWSWGDNASGQLGDGTTILRA---APVQIGTGFAQVAASRNWLQPVSLA 158

Query: 187 QTEDGKLFGWGYSADGRIGNLGKALESSPLD--SNIDRSSESDQEISSSTIEKAQKLVSE 244
              DG L+ WG + +G++G+     + +P+   +   R +  D   ++   + +      
Sbjct: 159 IKTDGTLWAWGSNRNGQVGDGSGLDQHAPVQIGTGFTRIAVGDWHAAAVKADGSAWTWGS 218

Query: 245 GMEKE------KYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGR 298
               +         P      ++      D+A G  H++VL  +G LL+ G+N  GQLG 
Sbjct: 219 NTSGQLGDGSIAITPRTTPVQVLPASSAADVAAGAAHTVVLRSDGSLLAWGANGDGQLGD 278

Query: 299 EKQDMGMFPVDINFHP-VSISSGLGHSLAI 327
                   PV + F   V I++   H+ A+
Sbjct: 279 GTTTGRRTPVAMGFGGVVQIAATANHTAAL 308



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 64/259 (24%), Positives = 103/259 (39%), Gaps = 64/259 (24%)

Query: 69  VSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASG 128
           V+AG+ HSLAV  +G +W+WG N   QLG  ++  R+T   P ++          A A  
Sbjct: 443 VAAGYQHSLAVAADGTLWSWGSNFSGQLGVPSIAFRST---PGQIG----SGFAHAAAGR 495

Query: 129 VVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQT 188
             S+ +  DG+LW+WG    G             P +V    G   V+V+ G  H +A  
Sbjct: 496 WHSAGVKTDGTLWLWGGDVSGSF---------DTPVQV----GSGFVEVAAGHEHTVALA 542

Query: 189 EDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEK 248
           EDG L+ WG +  G++                                       +G   
Sbjct: 543 EDGTLWTWGNNLFGQL--------------------------------------CDGTLD 564

Query: 249 EKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPV 308
           ++  P+        G     ++ G  H++ +  +G L +CG N  GQLG          V
Sbjct: 565 QRVAPV------QVGTGFTHVSAGAYHTMAMKADGTLWACGENGAGQLGDGTTTSREVLV 618

Query: 309 DINFHPVSISSGLGHSLAI 327
            +     ++S+G  H++AI
Sbjct: 619 GLGGGFAAVSAGETHTVAI 637



 Score = 57.8 bits (138), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 47/153 (30%), Positives = 70/153 (45%), Gaps = 14/153 (9%)

Query: 64  SDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRV-EGLDQVNVC 122
           S    V+AGH H++A+  +G +W WG N   QL  G L+ R     P +V  G   V+  
Sbjct: 526 SGFVEVAAGHEHTVALAEDGTLWTWGNNLFGQLCDGTLDQRVA---PVQVGTGFTHVSAG 582

Query: 123 AAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWG 182
           A       + A+  DG+LW  G++  GQLG G   +  ++        G     VS G  
Sbjct: 583 AYH-----TMAMKADGTLWACGENGAGQLGDGTTTSREVLVGL-----GGGFAAVSAGET 632

Query: 183 HALAQTEDGKLFGWGYSADGRIGNLGKALESSP 215
           H +A   DG ++ WG    G + + G    S+P
Sbjct: 633 HTVAIKADGTVWSWGSGIRGELADGGFGWRSAP 665



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 49/140 (35%), Positives = 68/140 (48%), Gaps = 12/140 (8%)

Query: 67  TSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFA 126
           T VSAG YH++A+  +G +WA G N   QLG G   SR      + + GL      A  A
Sbjct: 577 THVSAGAYHTMAMKADGTLWACGENGAGQLGDGTTTSR------EVLVGLGG-GFAAVSA 629

Query: 127 SGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALA 186
               + AI  DG++W WG   RG+L  G        P++V A A +     S    H L 
Sbjct: 630 GETHTVAIKADGTVWSWGSGIRGELADGG-FGWRSAPAQVGAGAAQVAAGGS----HTLI 684

Query: 187 QTEDGKLFGWGYSADGRIGN 206
              DG L+ +G SA G++G+
Sbjct: 685 VKADGTLWSFGQSAFGQLGD 704



 Score = 43.1 bits (100), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 38/118 (32%), Positives = 56/118 (47%), Gaps = 11/118 (9%)

Query: 51  GDAYEPTR--VPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWN 108
           GD    +R  + GL     +VSAG  H++A+  +G VW+WG     +L  G    R+   
Sbjct: 607 GDGTTTSREVLVGLGGGFAAVSAGETHTVAIKADGTVWSWGSGIRGELADGGFGWRSA-- 664

Query: 109 DPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRV 166
            P +V             + +V +    DG+LW +G+S  GQLG G     A+VP RV
Sbjct: 665 -PAQVGAGAAQVAAGGSHTLIVKA----DGTLWSFGQSAFGQLGDGT--VSALVPVRV 715



 Score = 38.1 bits (87), Expect = 7.4,   Method: Compositional matrix adjust.
 Identities = 29/91 (31%), Positives = 42/91 (46%), Gaps = 9/91 (9%)

Query: 264 VEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFHPVSISSGLGH 323
           VE   I+    HS+ + ++G L + G N  GQLG         PV I     S ++G G+
Sbjct: 44  VEWARISAPASHSVAIAKDGTLWAWGDNASGQLGDGTFVDRATPVRIGTGFASAAAGTGY 103

Query: 324 SLAICEVRSSNVTGGARGIVSWGWNRSSQLG 354
           +LA+    +         + SWG N S QLG
Sbjct: 104 TLAVKADGT---------LWSWGDNASGQLG 125


>gi|426255640|ref|XP_004021456.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC4 isoform 2
           [Ovis aries]
          Length = 1049

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 64/245 (26%), Positives = 114/245 (46%), Gaps = 43/245 (17%)

Query: 55  EPTRVPGLPS-DVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRV 113
           +P +V  L + ++ +VS G  H+LA+ + G V+AWG +++ QLG   L S      P+ +
Sbjct: 74  KPEQVVALDAQNIVAVSCGEAHTLALNDKGQVYAWGLDSDGQLG--LLGSEECIRVPRNI 131

Query: 114 EGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEK 173
           + L  + +         S A+     ++ WG++K GQLGLG D  +   P  +++L G  
Sbjct: 132 KSLSDIQIVQVACGYYHSLALSKASEVFCWGQNKYGQLGLGIDCKKQASPQLIKSLLGIP 191

Query: 174 IVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSS 233
            ++++ G  H+   T  G +FGWG +  G++G          L+                
Sbjct: 192 FMQIAAGGAHSFVLTLSGAIFGWGRNKFGQLG----------LND--------------- 226

Query: 234 TIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVY 293
                        E ++Y+P + +    +  ++V I CG DH+  L + G + + G+  Y
Sbjct: 227 -------------ENDRYVPNLLKSLRTQ--KIVYICCGEDHTAALTKEGGVFTFGAGGY 271

Query: 294 GQLGR 298
           GQLG 
Sbjct: 272 GQLGH 276



 Score = 78.2 bits (191), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 60/192 (31%), Positives = 99/192 (51%), Gaps = 16/192 (8%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVP-GLPS----DVTSVSAGHYHSLAVTNNG 83
           V ++G  S G LGL      +G +  E  RVP  + S     +  V+ G+YHSLA++   
Sbjct: 105 VYAWGLDSDGQLGL------LGSE--ECIRVPRNIKSLSDIQIVQVACGYYHSLALSKAS 156

Query: 84  AVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVW 143
            V+ WG+N   QLG G    +     P+ ++ L  +      A G  S  +   G+++ W
Sbjct: 157 EVFCWGQNKYGQLGLGIDCKKQA--SPQLIKSLLGIPFMQIAAGGAHSFVLTLSGAIFGW 214

Query: 144 GKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGR 203
           G++K GQLGL  D  +  VP+ +++L  +KIV +  G  H  A T++G +F +G    G+
Sbjct: 215 GRNKFGQLGLN-DENDRYVPNLLKSLRTQKIVYICCGEDHTAALTKEGGVFTFGAGGYGQ 273

Query: 204 IGNLGKALESSP 215
           +G+   + E +P
Sbjct: 274 LGHNSTSHEINP 285



 Score = 72.0 bits (175), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 69/273 (25%), Positives = 111/273 (40%), Gaps = 57/273 (20%)

Query: 87  AWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKS 146
            WG  +  QLG G ++      +P++ +      V         +  + DDG+++  G +
Sbjct: 3   CWGNASFGQLGLGGIDEEIVL-EPRKSDFFVNKKVRDVGCGLRHTVFVLDDGTVYTCGCN 61

Query: 147 KRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGN 206
             GQLG  K   +   P +V AL  + IV VS G  H LA  + G+++ WG  +DG++G 
Sbjct: 62  DLGQLGHEKSRKK---PEQVVALDAQNIVAVSCGEAHTLALNDKGQVYAWGLDSDGQLGL 118

Query: 207 LGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEV 266
           LG   E   +  NI   S+                                      +++
Sbjct: 119 LGSE-ECIRVPRNIKSLSD--------------------------------------IQI 139

Query: 267 VDIACGFDHSLVLGRNGVLLSCGSNVYGQLG-----REKQDMGMFPVDINFHPVSISSGL 321
           V +ACG+ HSL L +   +   G N YGQLG     +++    +    +    + I++G 
Sbjct: 140 VQVACGYYHSLALSKASEVFCWGQNKYGQLGLGIDCKKQASPQLIKSLLGIPFMQIAAGG 199

Query: 322 GHSLAICEVRSSNVTGGARGIVSWGWNRSSQLG 354
            HS  +          GA  I  WG N+  QLG
Sbjct: 200 AHSFVL-------TLSGA--IFGWGRNKFGQLG 223


>gi|627469|pir||B38919 hypothetical protein 2 - human (fragment)
 gi|40788957|dbj|BAA04945.2| KIAA0032 [Homo sapiens]
          Length = 1054

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 79/288 (27%), Positives = 130/288 (45%), Gaps = 23/288 (7%)

Query: 28  AVVSFGDGSQGALGLPTS-LTGVGGDAYEPTRVPGLPSD-VTSVSAGHYHSLAVTNNGAV 85
           +V    DG     GL T    G   +  +P ++  L    +  V+ G  HSLA+++ G +
Sbjct: 50  SVFLLEDGEVYTCGLNTKGQLGHEREGNKPEQIGALADQHIIHVACGESHSLALSDRGQL 109

Query: 86  WAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGK 145
           ++WG  ++ QLG    E       P+ ++ L+Q  +           A+  DG  + WGK
Sbjct: 110 FSWGAGSDGQLGLMTTEDSVAV--PRLIQKLNQQTILQVSCGNWHCLALAADGQFFTWGK 167

Query: 146 SKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIG 205
           +  GQLGLGK+      P RV +L G  + +V+ G  H+ A +  G +FGWG +  G++G
Sbjct: 168 NSHGQLGLGKEFPSQASPQRVRSLEGIPLAQVAAGGAHSFALSLSGAVFGWGMNNAGQLG 227

Query: 206 NLGKALESSPLDSNIDRSSE----SDQEISSSTIEKAQKLVSEG-----------MEKEK 250
              +    SP    + R+ +    S  E  ++ + K+  + + G           M  E 
Sbjct: 228 LSDEKDRESPCHVKLLRTQKVVYISCGEEHTAVLTKSGGVFTFGAGSCGQLGHDSMNDEV 287

Query: 251 YMPIIWEPFLVEGVEVVDIACGFDHSLVL-GRNGVLLSCGSNVYGQLG 297
               + E   + G EV  IACG  H+L     +G++ + G    GQLG
Sbjct: 288 NPRRVLE---LMGSEVTQIACGRQHTLAFVPSSGLIYAFGCGARGQLG 332



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 37/115 (32%), Positives = 60/115 (52%), Gaps = 20/115 (17%)

Query: 266 VVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDI----NFHPVSISSGL 321
           V ++ACG +HS+ L  +G + +CG N  GQLG E++  G  P  I    + H + ++ G 
Sbjct: 40  VKEVACGGNHSVFLLEDGEVYTCGLNTKGQLGHERE--GNKPEQIGALADQHIIHVACGE 97

Query: 322 GHSLAICEVRSSNVTGGARG-IVSWGWNRSSQLGRMGPDN---VPLVVEGLEGES 372
            HSLA+ +          RG + SWG     QLG M  ++   VP +++ L  ++
Sbjct: 98  SHSLALSD----------RGQLFSWGAGSDGQLGLMTTEDSVAVPRLIQKLNQQT 142


>gi|188035869|ref|NP_082981.3| hect domain and RLD 3 [Mus musculus]
 gi|148666330|gb|EDK98746.1| hect domain and RLD 3, isoform CRA_b [Mus musculus]
 gi|148666331|gb|EDK98747.1| hect domain and RLD 3, isoform CRA_b [Mus musculus]
 gi|148666332|gb|EDK98748.1| hect domain and RLD 3, isoform CRA_b [Mus musculus]
 gi|148877724|gb|AAI45981.1| Hect domain and RLD 3 [Mus musculus]
 gi|148877951|gb|AAI45979.1| Hect domain and RLD 3 [Mus musculus]
          Length = 1050

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 68/252 (26%), Positives = 117/252 (46%), Gaps = 29/252 (11%)

Query: 66  VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAF 125
           +  V+ G  HSLA+++ G +++WG  ++ QLG    E       P+ ++ L+Q  +    
Sbjct: 86  IIHVACGESHSLALSDRGQLFSWGAGSDGQLGLMTTEDSVAV--PRLIQKLNQQTILQVS 143

Query: 126 ASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHAL 185
                  A+  DG  + WGK+  GQLGLGK+      P RV +L G  + +V+ G  H+ 
Sbjct: 144 CGNWHCLALAADGQFFTWGKNSHGQLGLGKEFPSQTSPQRVRSLEGIPLAQVAAGGAHSF 203

Query: 186 AQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSE----SDQEISSSTIEKA--- 238
           A +  G +FGWG +  G++G   +    SP    + R+ +    S  E  ++ + K+   
Sbjct: 204 ALSLSGAVFGWGMNNAGQLGLSDEKDRESPCHVKLLRTQKVVYISCGEEHTAVLTKSGGV 263

Query: 239 ------------QKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVL-GRNGVL 285
                          V++ +   + + ++       G EV  IACG  H+L L   +G++
Sbjct: 264 FTFGAGSCGQLGHDSVNDEVNPRRVLELM-------GSEVTQIACGRQHTLALVPSSGLI 316

Query: 286 LSCGSNVYGQLG 297
            + G    GQLG
Sbjct: 317 YAFGCGAKGQLG 328



 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 80/280 (28%), Positives = 126/280 (45%), Gaps = 29/280 (10%)

Query: 39  ALGLPTSLTGVGGDAYEPTRVPGLPSD--VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQL 96
           +LG P   + + G   EP +V    SD  +  V+ G  HS+ +  +G V+  G N + QL
Sbjct: 8   SLGQPGISSNLQGIVAEP-QVCRFVSDRSIKEVACGGNHSVFLLEDGEVYTCGVNTKGQL 66

Query: 97  GRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKD 156
           G          N P+++  L   ++         S A+ D G L+ WG    GQLGL   
Sbjct: 67  GH-----EREGNKPEQIGALADQHIIHVACGESHSLALSDRGQLFSWGAGSDGQLGLMTT 121

Query: 157 ITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPL 216
                VP  ++ L  + I++VS G  H LA   DG+ F WG ++ G++G LGK   S   
Sbjct: 122 EDSVAVPRLIQKLNQQTILQVSCGNWHCLALAADGQFFTWGKNSHGQLG-LGKEFPSQTS 180

Query: 217 DSNIDRSSESDQEIS-------SSTIEKAQKLVSEGM----------EKEKYMPIIWEPF 259
              + RS E             S  +  +  +   GM          EK++  P   +  
Sbjct: 181 PQRV-RSLEGIPLAQVAAGGAHSFALSLSGAVFGWGMNNAGQLGLSDEKDRESPCHVK-- 237

Query: 260 LVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGRE 299
           L+   +VV I+CG +H+ VL ++G + + G+   GQLG +
Sbjct: 238 LLRTQKVVYISCGEEHTAVLTKSGGVFTFGAGSCGQLGHD 277


>gi|164448576|ref|NP_001070362.2| probable E3 ubiquitin-protein ligase HERC4 [Bos taurus]
 gi|296472143|tpg|DAA14258.1| TPA: hect domain and RLD 4 [Bos taurus]
          Length = 1057

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 64/245 (26%), Positives = 114/245 (46%), Gaps = 43/245 (17%)

Query: 55  EPTRVPGLPS-DVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRV 113
           +P +V  L + ++ +VS G  H+LA+ + G V+AWG +++ QLG   L S      P+ +
Sbjct: 74  KPEQVVALDAQNIVAVSCGEAHTLALNDKGQVYAWGLDSDGQLG--LLGSEECIRVPRNI 131

Query: 114 EGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEK 173
           + L  + +         S A+     ++ WG++K GQLGLG D  +   P  +++L G  
Sbjct: 132 KSLSDIQIVQVACGYYHSLALSKASEVFCWGQNKYGQLGLGIDCKKQASPQLIKSLLGIP 191

Query: 174 IVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSS 233
            ++++ G  H+   T  G +FGWG +  G++G          L+                
Sbjct: 192 FMQIAAGGAHSFVLTLSGAIFGWGRNKFGQLG----------LND--------------- 226

Query: 234 TIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVY 293
                        E ++Y+P + +    +  ++V I CG DH+  L + G + + G+  Y
Sbjct: 227 -------------ENDRYVPNLLKSLRTQ--KIVYICCGEDHTAALTKEGGVFTFGAGGY 271

Query: 294 GQLGR 298
           GQLG 
Sbjct: 272 GQLGH 276



 Score = 78.2 bits (191), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 60/192 (31%), Positives = 99/192 (51%), Gaps = 16/192 (8%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVP-GLPS----DVTSVSAGHYHSLAVTNNG 83
           V ++G  S G LGL      +G +  E  RVP  + S     +  V+ G+YHSLA++   
Sbjct: 105 VYAWGLDSDGQLGL------LGSE--ECIRVPRNIKSLSDIQIVQVACGYYHSLALSKAS 156

Query: 84  AVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVW 143
            V+ WG+N   QLG G    +     P+ ++ L  +      A G  S  +   G+++ W
Sbjct: 157 EVFCWGQNKYGQLGLGIDCKKQA--SPQLIKSLLGIPFMQIAAGGAHSFVLTLSGAIFGW 214

Query: 144 GKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGR 203
           G++K GQLGL  D  +  VP+ +++L  +KIV +  G  H  A T++G +F +G    G+
Sbjct: 215 GRNKFGQLGLN-DENDRYVPNLLKSLRTQKIVYICCGEDHTAALTKEGGVFTFGAGGYGQ 273

Query: 204 IGNLGKALESSP 215
           +G+   + E +P
Sbjct: 274 LGHNSTSHEINP 285



 Score = 72.0 bits (175), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 69/273 (25%), Positives = 111/273 (40%), Gaps = 57/273 (20%)

Query: 87  AWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKS 146
            WG  +  QLG G ++      +P++ +      V         +  + DDG+++  G +
Sbjct: 3   CWGNASFGQLGLGGIDEEIVL-EPRKSDFFINKKVRDVGCGLRHTVFVLDDGTVYTCGCN 61

Query: 147 KRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGN 206
             GQLG  K   +   P +V AL  + IV VS G  H LA  + G+++ WG  +DG++G 
Sbjct: 62  DLGQLGHEKSRKK---PEQVVALDAQNIVAVSCGEAHTLALNDKGQVYAWGLDSDGQLGL 118

Query: 207 LGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEV 266
           LG   E   +  NI   S+                                      +++
Sbjct: 119 LGSE-ECIRVPRNIKSLSD--------------------------------------IQI 139

Query: 267 VDIACGFDHSLVLGRNGVLLSCGSNVYGQLG-----REKQDMGMFPVDINFHPVSISSGL 321
           V +ACG+ HSL L +   +   G N YGQLG     +++    +    +    + I++G 
Sbjct: 140 VQVACGYYHSLALSKASEVFCWGQNKYGQLGLGIDCKKQASPQLIKSLLGIPFMQIAAGG 199

Query: 322 GHSLAICEVRSSNVTGGARGIVSWGWNRSSQLG 354
            HS  +          GA  I  WG N+  QLG
Sbjct: 200 AHSFVL-------TLSGA--IFGWGRNKFGQLG 223


>gi|7657152|ref|NP_055421.1| probable E3 ubiquitin-protein ligase HERC3 isoform 1 [Homo sapiens]
 gi|397480079|ref|XP_003811323.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC3 isoform 1
           [Pan paniscus]
 gi|426344933|ref|XP_004039158.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC3 isoform 1
           [Gorilla gorilla gorilla]
 gi|2495699|sp|Q15034.1|HERC3_HUMAN RecName: Full=Probable E3 ubiquitin-protein ligase HERC3; AltName:
           Full=HECT domain and RCC1-like domain-containing protein
           3
 gi|119626429|gb|EAX06024.1| hect domain and RLD 3 [Homo sapiens]
 gi|158261003|dbj|BAF82679.1| unnamed protein product [Homo sapiens]
 gi|168274306|dbj|BAG09573.1| E3 ubiquitin-protein ligase HERC3 [synthetic construct]
 gi|187252515|gb|AAI66672.1| Hect domain and RLD 3 [synthetic construct]
 gi|410211922|gb|JAA03180.1| hect domain and RLD 3 [Pan troglodytes]
 gi|410261200|gb|JAA18566.1| hect domain and RLD 3 [Pan troglodytes]
 gi|410295580|gb|JAA26390.1| hect domain and RLD 3 [Pan troglodytes]
 gi|410339519|gb|JAA38706.1| hect domain and RLD 3 [Pan troglodytes]
          Length = 1050

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 79/288 (27%), Positives = 130/288 (45%), Gaps = 23/288 (7%)

Query: 28  AVVSFGDGSQGALGLPTS-LTGVGGDAYEPTRVPGLPSD-VTSVSAGHYHSLAVTNNGAV 85
           +V    DG     GL T    G   +  +P ++  L    +  V+ G  HSLA+++ G +
Sbjct: 46  SVFLLEDGEVYTCGLNTKGQLGHEREGNKPEQIGALADQHIIHVACGESHSLALSDRGQL 105

Query: 86  WAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGK 145
           ++WG  ++ QLG    E       P+ ++ L+Q  +           A+  DG  + WGK
Sbjct: 106 FSWGAGSDGQLGLMTTEDSVAV--PRLIQKLNQQTILQVSCGNWHCLALAADGQFFTWGK 163

Query: 146 SKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIG 205
           +  GQLGLGK+      P RV +L G  + +V+ G  H+ A +  G +FGWG +  G++G
Sbjct: 164 NSHGQLGLGKEFPSQASPQRVRSLEGIPLAQVAAGGAHSFALSLSGAVFGWGMNNAGQLG 223

Query: 206 NLGKALESSPLDSNIDRSSE----SDQEISSSTIEKAQKLVSEG-----------MEKEK 250
              +    SP    + R+ +    S  E  ++ + K+  + + G           M  E 
Sbjct: 224 LSDEKDRESPCHVKLLRTQKVVYISCGEEHTAVLTKSGGVFTFGAGSCGQLGHDSMNDEV 283

Query: 251 YMPIIWEPFLVEGVEVVDIACGFDHSLVL-GRNGVLLSCGSNVYGQLG 297
               + E   + G EV  IACG  H+L     +G++ + G    GQLG
Sbjct: 284 NPRRVLE---LMGSEVTQIACGRQHTLAFVPSSGLIYAFGCGARGQLG 328



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 37/115 (32%), Positives = 60/115 (52%), Gaps = 20/115 (17%)

Query: 266 VVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDI----NFHPVSISSGL 321
           V ++ACG +HS+ L  +G + +CG N  GQLG E++  G  P  I    + H + ++ G 
Sbjct: 36  VKEVACGGNHSVFLLEDGEVYTCGLNTKGQLGHERE--GNKPEQIGALADQHIIHVACGE 93

Query: 322 GHSLAICEVRSSNVTGGARG-IVSWGWNRSSQLGRMGPDN---VPLVVEGLEGES 372
            HSLA+ +          RG + SWG     QLG M  ++   VP +++ L  ++
Sbjct: 94  SHSLALSD----------RGQLFSWGAGSDGQLGLMTTEDSVAVPRLIQKLNQQT 138


>gi|405354387|ref|ZP_11023754.1| RCC1 repeat domain protein [Chondromyces apiculatus DSM 436]
 gi|397092349|gb|EJJ23118.1| RCC1 repeat domain protein [Myxococcus sp. (contaminant ex DSM
           436)]
          Length = 837

 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 68/188 (36%), Positives = 103/188 (54%), Gaps = 13/188 (6%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAW 88
           V S+G+   G LG P   +   G      +VPGL  DVT+++AG+ H++A+  NG+VW+W
Sbjct: 611 VWSWGNNYFGMLGHPAWPSTTQG----AVQVPGL-MDVTAIAAGNLHAVALRKNGSVWSW 665

Query: 89  GRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKR 148
           GRN+  QLG G    R   + P  +  L   NV A  A    + A+ DDG++W WG +  
Sbjct: 666 GRNSAGQLGDGTNIQR---DSPVPLREL--ANVKAITAGRDFAVALHDDGTVWAWGANDS 720

Query: 149 GQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLG 208
           GQLG G   T  + P +V+ L G  +V V  G  H LA   DG ++ WG +  G++G+  
Sbjct: 721 GQLGDGTFATRPL-PQQVQGLTG--VVAVDAGDDHTLALRNDGTVWAWGNNDLGQLGDGT 777

Query: 209 KALESSPL 216
           +  + +P+
Sbjct: 778 RTTQPTPV 785



 Score = 82.4 bits (202), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 95/320 (29%), Positives = 146/320 (45%), Gaps = 44/320 (13%)

Query: 56  PTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEG 115
           P +VP L +D  ++SAG  H++A+  +G VW WG ++  QLG G + S A    P + +G
Sbjct: 378 PVQVPDL-ADCKALSAGDEHTVALRADGTVWVWGTDDFGQLGNGGVPSDA---KPVQAQG 433

Query: 116 LDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIV 175
           L  V   AA     V  AIG+DGS+W WG +  GQLG G   + +  P R+  L   K V
Sbjct: 434 LMAVKAVAAGNDWTV--AIGEDGSVWAWGSNYYGQLGDGSRRSRS-TPVRLAGLTEGKTV 490

Query: 176 KVSFGWGHALAQTEDGKLFGW--GYS---ADGRIGNLGKALESSPLDSNIDRSSES---- 226
            V  G  HA+   +DG L  W  GYS    DG   +   A   +P  S +   + +    
Sbjct: 491 SV--GSWHAVLLRQDGSLRTWGSGYSDVLGDGTTYSKDAAPVQAPELSGVKAVAAAYEHS 548

Query: 227 -----DQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFD----HSL 277
                D  + S  + +  +L  +G  +   +P+  +   + G   V  A G D     ++
Sbjct: 549 VAVRGDGTVWSWGLNQDDQL-GDGTFRPSSVPV--QVLGITGATAV--AAGGDTLLAFTV 603

Query: 278 VLGRNGVLLSCGSNVYGQLGR---EKQDMGMFPVDINFHPVSISSGLGHSLAICEVRSSN 334
            L  +G + S G+N +G LG         G   V       +I++G  H++A+ +  S  
Sbjct: 604 ALREDGTVWSWGNNYFGMLGHPAWPSTTQGAVQVPGLMDVTAIAAGNLHAVALRKNGS-- 661

Query: 335 VTGGARGIVSWGWNRSSQLG 354
                  + SWG N + QLG
Sbjct: 662 -------VWSWGRNSAGQLG 674



 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 97/339 (28%), Positives = 148/339 (43%), Gaps = 33/339 (9%)

Query: 48  GVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATW 107
           GV  DA +P +  GL + V +V+AG+  ++A+  +G+VWAWG N   QLG G+  SR+T 
Sbjct: 421 GVPSDA-KPVQAQGLMA-VKAVAAGNDWTVAIGEDGSVWAWGSNYYGQLGDGSRRSRST- 477

Query: 108 NDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVE 167
             P R+ GL +    +  +   V   +  DGSL  WG      LG G   ++   P +  
Sbjct: 478 --PVRLAGLTEGKTVSVGSWHAV--LLRQDGSLRTWGSGYSDVLGDGTTYSKDAAPVQAP 533

Query: 168 ALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESD 227
            L+G K V  ++   H++A   DG ++ WG + D ++G+      S P+       + + 
Sbjct: 534 ELSGVKAVAAAY--EHSVAVRGDGTVWSWGLNQDDQLGDGTFRPSSVPVQVLGITGATAV 591

Query: 228 QEISSSTIEKAQKLVSEGME---KEKYMPIIWEP---------FLVEGV-EVVDIACGFD 274
                + +     L  +G        Y  ++  P           V G+ +V  IA G  
Sbjct: 592 AAGGDTLLAFTVALREDGTVWSWGNNYFGMLGHPAWPSTTQGAVQVPGLMDVTAIAAGNL 651

Query: 275 HSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFHPVSISSGLGHSLAICEVRSSN 334
           H++ L +NG + S G N  GQLG         PV +          L +  AI   R   
Sbjct: 652 HAVALRKNGSVWSWGRNSAGQLGDGTNIQRDSPVPLRE--------LANVKAITAGRDFA 703

Query: 335 VTGGARGIV-SWGWNRSSQL--GRMGPDNVPLVVEGLEG 370
           V     G V +WG N S QL  G      +P  V+GL G
Sbjct: 704 VALHDDGTVWAWGANDSGQLGDGTFATRPLPQQVQGLTG 742



 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 84/320 (26%), Positives = 146/320 (45%), Gaps = 34/320 (10%)

Query: 56  PTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEG 115
           P + P L S V +V+A + HS+AV  +G VW+WG N + QLG G     +    P +V G
Sbjct: 529 PVQAPEL-SGVKAVAAAYEHSVAVRGDGTVWSWGLNQDDQLGDGTFRPSSV---PVQVLG 584

Query: 116 LDQVNVCAAFASGVV--SSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEK 173
           +      AA    ++  + A+ +DG++W WG +  G   LG     +     V+      
Sbjct: 585 ITGATAVAAGGDTLLAFTVALREDGTVWSWGNNYFGM--LGHPAWPSTTQGAVQVPGLMD 642

Query: 174 IVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLD----SNIDRSSESDQE 229
           +  ++ G  HA+A  ++G ++ WG ++ G++G+       SP+     +N+ ++  + ++
Sbjct: 643 VTAIAAGNLHAVALRKNGSVWSWGRNSAGQLGDGTNIQRDSPVPLRELANV-KAITAGRD 701

Query: 230 ISSSTIEK----AQKLVSEGMEKEKYMPIIWEPFLVEGVE-VVDIACGFDHSLVLGRNGV 284
            + +  +     A      G   +        P  V+G+  VV +  G DH+L L  +G 
Sbjct: 702 FAVALHDDGTVWAWGANDSGQLGDGTFATRPLPQQVQGLTGVVAVDAGDDHTLALRNDGT 761

Query: 285 LLSCGSNVYGQLGREKQDMGMFPVDIN-FHPVS-ISSGLGHSLAICEVRSSNVTGGARGI 342
           + + G+N  GQLG   +     PV +  F  VS +++G   S+ + E           G 
Sbjct: 762 VWAWGNNDLGQLGDGTRTTQPTPVQMQGFRKVSAVAAGFISSVVLLE----------NGT 811

Query: 343 VSWGWNRSSQLGRMGPDNVP 362
           V WGW      G  G D +P
Sbjct: 812 V-WGWG---AYGTSGVDLIP 827



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 93/380 (24%), Positives = 156/380 (41%), Gaps = 77/380 (20%)

Query: 51  GDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDP 110
           G    P +VPGL +  T+++ G  H++A+  +G+VW WG N   QLG    ES+   + P
Sbjct: 229 GSRVTPMQVPGL-TGATAIAVGDSHTVALLKDGSVWTWGDNRSGQLGDAGRESQN--HIP 285

Query: 111 KRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALA 170
            +V GL   +V A  A G  + A+  DG++W WG  +  +     + T   VP   + +A
Sbjct: 286 AQVPGL--ASVVAIAAGGSRTVAVRQDGTVWTWGTKQSNRQDF--NPTPVQVPGLTDVIA 341

Query: 171 GEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEI 230
            +          H +    DG ++GWG +      NL        L   +     +D + 
Sbjct: 342 ADASDN------HVVVLRTDGTVWGWGRA------NLLGGSTQDWLTMPVQVPDLADCKA 389

Query: 231 SSSTIEKAQKLVSEGME----KEKY-------MPIIWEPFLVEGVEVVD-IACGFDHSLV 278
            S+  E    L ++G       + +       +P   +P   +G+  V  +A G D ++ 
Sbjct: 390 LSAGDEHTVALRADGTVWVWGTDDFGQLGNGGVPSDAKPVQAQGLMAVKAVAAGNDWTVA 449

Query: 279 LGRNGVLLSCGSNVYGQLGREKQDMGMFPVDI------------NFHPV----------- 315
           +G +G + + GSN YGQLG   +     PV +            ++H V           
Sbjct: 450 IGEDGSVWAWGSNYYGQLGDGSRRSRSTPVRLAGLTEGKTVSVGSWHAVLLRQDGSLRTW 509

Query: 316 ------SISSGLGHSLAICEVRSSNVTG------------GARG---IVSWGWNRSSQL- 353
                  +  G  +S     V++  ++G              RG   + SWG N+  QL 
Sbjct: 510 GSGYSDVLGDGTTYSKDAAPVQAPELSGVKAVAAAYEHSVAVRGDGTVWSWGLNQDDQLG 569

Query: 354 -GRMGPDNVPLVVEGLEGES 372
            G   P +VP+ V G+ G +
Sbjct: 570 DGTFRPSSVPVQVLGITGAT 589



 Score = 74.3 bits (181), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 56/170 (32%), Positives = 93/170 (54%), Gaps = 14/170 (8%)

Query: 28  AVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWA 87
           +V S+G  S G LG  T++     D+  P R     ++V +++AG   ++A+ ++G VWA
Sbjct: 661 SVWSWGRNSAGQLGDGTNIQR---DSPVPLREL---ANVKAITAGRDFAVALHDDGTVWA 714

Query: 88  WGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSK 147
           WG N+  QLG G   +R     P++V+GL    V A  A    + A+ +DG++W WG + 
Sbjct: 715 WGANDSGQLGDGTFATRPL---PQQVQGL--TGVVAVDAGDDHTLALRNDGTVWAWGNND 769

Query: 148 RGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWG 197
            GQLG G   T+   P+ V+     K+  V+ G+  ++   E+G ++GWG
Sbjct: 770 LGQLGDGTRTTQ---PTPVQMQGFRKVSAVAAGFISSVVLLENGTVWGWG 816



 Score = 70.9 bits (172), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 83/297 (27%), Positives = 132/297 (44%), Gaps = 28/297 (9%)

Query: 66  VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRG-ALESRATWNDPKRVEGLDQVNVCAA 124
           VT+V +   H  A+  +G++W WG N   QLG   +  SR T   P +V GL      A 
Sbjct: 192 VTAVKSRLAHVAALKEDGSIWTWGSNAASQLGADISAGSRVT---PMQVPGLTGATAIAV 248

Query: 125 FASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHA 184
             S  V  A+  DGS+W WG ++ GQLG     ++  +P++V  LA   +V ++ G    
Sbjct: 249 GDSHTV--ALLKDGSVWTWGDNRSGQLGDAGRESQNHIPAQVPGLA--SVVAIAAGGSRT 304

Query: 185 LAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSE 244
           +A  +DG ++ WG     R  +        P  +++  +  SD  +    + +    V  
Sbjct: 305 VAVRQDGTVWTWGTKQSNRQ-DFNPTPVQVPGLTDVIAADASDNHV---VVLRTDGTV-W 359

Query: 245 GMEKEKYMPIIWEPFLVEGVEVVDIA------CGFDHSLVLGRNGVLLSCGSNVYGQLGR 298
           G  +   +    + +L   V+V D+A       G +H++ L  +G +   G++ +GQLG 
Sbjct: 360 GWGRANLLGGSTQDWLTMPVQVPDLADCKALSAGDEHTVALRADGTVWVWGTDDFGQLGN 419

Query: 299 EKQDMGMFPVDINFHPVSISSGLGHSLAICEVRSSNVTGGARGIV-SWGWNRSSQLG 354
                G  P D    PV  + GL    A+       V  G  G V +WG N   QLG
Sbjct: 420 -----GGVPSDAK--PVQ-AQGLMAVKAVAAGNDWTVAIGEDGSVWAWGSNYYGQLG 468



 Score = 68.6 bits (166), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 81/307 (26%), Positives = 134/307 (43%), Gaps = 40/307 (13%)

Query: 75  HSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAI 134
           H+L VT    V AWG N   QLGRG  + R        V GL  V    +  + V  +A+
Sbjct: 155 HALVVTEQQKVQAWGNNESTQLGRGEPQYRT-------VSGLTGVTAVKSRLAHV--AAL 205

Query: 135 GDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLF 194
            +DGS+W WG +   QLG        + P +V  L G   + V  G  H +A  +DG ++
Sbjct: 206 KEDGSIWTWGSNAASQLGADISAGSRVTPMQVPGLTGATAIAV--GDSHTVALLKDGSVW 263

Query: 195 GWGYSADGRIGNLGKALES------SPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEK 248
            WG +  G++G+ G+  ++        L S +  ++   + ++           ++   +
Sbjct: 264 TWGDNRSGQLGDAGRESQNHIPAQVPGLASVVAIAAGGSRTVAVRQDGTVWTWGTKQSNR 323

Query: 249 EKYMPIIWEPFLVEGV-EVVDIACGFDHSLVLGRNGVLLSCG-SNVYGQLGREKQDMGMF 306
           + + P    P  V G+ +V+      +H +VL  +G +   G +N+   LG   QD    
Sbjct: 324 QDFNPT---PVQVPGLTDVIAADASDNHVVVLRTDGTVWGWGRANL---LGGSTQDWLTM 377

Query: 307 PVDIN--FHPVSISSGLGHSLAICEVRSSNVTGGARGIV-SWGWNRSSQLGRMG--PDNV 361
           PV +       ++S+G  H++A+           A G V  WG +   QLG  G   D  
Sbjct: 378 PVQVPDLADCKALSAGDEHTVALR----------ADGTVWVWGTDDFGQLGNGGVPSDAK 427

Query: 362 PLVVEGL 368
           P+  +GL
Sbjct: 428 PVQAQGL 434


>gi|351711822|gb|EHB14741.1| Protein RCC2, partial [Heterocephalus glaber]
          Length = 427

 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 81/293 (27%), Positives = 129/293 (44%), Gaps = 35/293 (11%)

Query: 75  HSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAI 134
           HSL +T  G +W+WGRN + QLG G  +       P+ +EGL    +  A      + A+
Sbjct: 66  HSLLITTEGKLWSWGRNEKGQLGHGDTKRVEA---PRLIEGLSHEVIVLATCGRNHTLAL 122

Query: 135 GDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLF 194
            + GS++ +G++K GQLGLG        P+++    G+ I K++ G   ++     G L+
Sbjct: 123 TETGSVFAFGENKMGQLGLGNQTDAVPSPAQI-MYNGQPITKMACGAEFSMIMDCKGNLY 181

Query: 195 GWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPI 254
            +G    G++G+            N D    +  +      E   + V+  +EK K   I
Sbjct: 182 SFGCPEYGQLGH------------NSDGKFIARAQRIEYDCELVPRRVAIFIEKTKDGQI 229

Query: 255 IWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFHP 314
           +  P +V    V D+ACG +H+LVL     + S G   YG+LG  +Q   M P  +    
Sbjct: 230 LPVPNVV----VRDVACGANHTLVLDSQKRVFSWGFGGYGRLGHAEQKDEMVPRLVKLFD 285

Query: 315 V------SISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPDNV 361
                   I +G   S A+ EV          G+  WG   +S+   M P  V
Sbjct: 286 FPGRGASQIYAGYTCSFAVSEV---------GGLFFWGATNTSRESTMYPKAV 329



 Score = 52.0 bits (123), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 55/186 (29%), Positives = 80/186 (43%), Gaps = 31/186 (16%)

Query: 56  PTRVPGLPSDVTSV-SAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVE 114
           P  + GL  +V  + + G  H+LA+T  G+V+A+G N   QLG G      T   P   +
Sbjct: 98  PRLIEGLSHEVIVLATCGRNHTLALTETGSVFAFGENKMGQLGLG----NQTDAVPSPAQ 153

Query: 115 GLDQVNVCAAFASGVVSSAIGD-DGSLWVWGKSKRGQLGL---GKDITEA--------IV 162
            +         A G   S I D  G+L+ +G  + GQLG    GK I  A        +V
Sbjct: 154 IMYNGQPITKMACGAEFSMIMDCKGNLYSFGCPEYGQLGHNSDGKFIARAQRIEYDCELV 213

Query: 163 PSRVEALAGEK-------------IVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGK 209
           P RV A+  EK             +  V+ G  H L      ++F WG+   GR+G+  +
Sbjct: 214 PRRV-AIFIEKTKDGQILPVPNVVVRDVACGANHTLVLDSQKRVFSWGFGGYGRLGHAEQ 272

Query: 210 ALESSP 215
             E  P
Sbjct: 273 KDEMVP 278


>gi|348666178|gb|EGZ06006.1| hypothetical protein PHYSODRAFT_533148 [Phytophthora sojae]
          Length = 429

 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 83/312 (26%), Positives = 131/312 (41%), Gaps = 59/312 (18%)

Query: 78  AVTNNGAVWAWGRNNEVQLGRGALESRATWN-----DPKRVEGLDQVNVCAAFASGVVSS 132
           A +   +V+ WG     QLG G +      N      PK +E  +   +         S+
Sbjct: 37  AFSTQSSVYTWGNGTLGQLGHGPVVKSGIRNAYEELTPKLLEAFEGKAITHVEFGASHSA 96

Query: 133 AIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGK 192
           AI +DG L+VWG ++  +LGLG+      +P  VEAL G KIV VS G     A   DGK
Sbjct: 97  AIDEDGKLYVWGSNEYSKLGLGESSEMETLPREVEALKGVKIVDVSCGDYFTAAVDADGK 156

Query: 193 LFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYM 252
           ++ WG+                                  ST+ K    +     K++  
Sbjct: 157 MYSWGWGG--------------------------------STM-KGAGGLGHAGGKDEPT 183

Query: 253 PIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINF 312
           P +    + +GV ++ + CG  H++ L ++G + + G+  YG+LG  + D    P  I F
Sbjct: 184 PRLLTTLVDQGVPILTVECGEFHTVALSKDGEIWAWGNGEYGRLGNGESDTCEVPEPIEF 243

Query: 313 HP----VSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMG--------PDN 360
                 VSI++G   S A+ +            + SWG N  +QLG  G         ++
Sbjct: 244 FSKDNVVSIAAGRDFSFALTDNGE---------LYSWGGNSQNQLGIGGGLAMDVYNIES 294

Query: 361 VPLVVEGLEGES 372
           +P++VE   G S
Sbjct: 295 IPVLVEAFNGLS 306



 Score = 72.4 bits (176), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 68/276 (24%), Positives = 116/276 (42%), Gaps = 65/276 (23%)

Query: 61  GLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVN 120
           G+P  + +V  G +H++A++ +G +WAWG     +LG G  +   T   P+ +E   + N
Sbjct: 194 GVP--ILTVECGEFHTVALSKDGEIWAWGNGEYGRLGNGESD---TCEVPEPIEFFSKDN 248

Query: 121 VCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAI-----VPSRVEALAGEKIV 175
           V +  A    S A+ D+G L+ WG + + QLG+G  +   +     +P  VEA  G  + 
Sbjct: 249 VVSIAAGRDFSFALTDNGELYSWGGNSQNQLGIGGGLAMDVYNIESIPVLVEAFNGLSVK 308

Query: 176 KVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTI 235
           +++ G+ HA A T+D           GR+   G  +   P             E+++   
Sbjct: 309 QIAAGYDHAAAVTDD-----------GRLYMWGSKIWIEP------------HEMTA--- 342

Query: 236 EKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQ 295
                                    V   ++V +ACG  +++ L  NG + + G      
Sbjct: 343 -------------------------VNEYKMVQVACGRQYTVALSENGEVFTFGKGSSNC 377

Query: 296 LGREKQDMGMFPVDI----NFHPVSISSGLGHSLAI 327
           LG   +   + PV I    + +  SIS G  H  AI
Sbjct: 378 LGHGDRKNQLQPVQIEALADVNITSISCGDYHMGAI 413



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 84/348 (24%), Positives = 150/348 (43%), Gaps = 45/348 (12%)

Query: 15  LTSRIFMRSASGT--AVVSFGDGSQGALGL-PTSLTGVGGDAYE---PTRVPGLPSD-VT 67
           L +R  ++ A  T  +V ++G+G+ G LG  P   +G+  +AYE   P  +       +T
Sbjct: 28  LATRSALQHAFSTQSSVYTWGNGTLGQLGHGPVVKSGIR-NAYEELTPKLLEAFEGKAIT 86

Query: 68  SVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFAS 127
            V  G  HS A+  +G ++ WG N   +LG G  ES      P+ VE L  V +      
Sbjct: 87  HVEFGASHSAAIDEDGKLYVWGSNEYSKLGLG--ESSEMETLPREVEALKGVKIVDVSCG 144

Query: 128 GVVSSAIGDDGSLWVWG----KSKRGQLGLGKDITEAIVPSRVEALA--GEKIVKVSFGW 181
              ++A+  DG ++ WG      K           +   P  +  L   G  I+ V  G 
Sbjct: 145 DYFTAAVDADGKMYSWGWGGSTMKGAGGLGHAGGKDEPTPRLLTTLVDQGVPILTVECGE 204

Query: 182 GHALAQTEDGKLFGWGYSADGRIGN-------LGKALESSPLDSNIDRSSESDQEISSST 234
            H +A ++DG+++ WG    GR+GN       + + +E    D+ +  ++  D   + + 
Sbjct: 205 FHTVALSKDGEIWAWGNGEYGRLGNGESDTCEVPEPIEFFSKDNVVSIAAGRDFSFALTD 264

Query: 235 ---------IEKAQKLVSEGMEKEKY----MPIIWEPFLVEGVEVVDIACGFDHSLVLGR 281
                      + Q  +  G+  + Y    +P++ E F   G+ V  IA G+DH+  +  
Sbjct: 265 NGELYSWGGNSQNQLGIGGGLAMDVYNIESIPVLVEAF--NGLSVKQIAAGYDHAAAVTD 322

Query: 282 NGVLLSCGSNVYGQLGREKQDMGMFPVDINFHPVSISSGLGHSLAICE 329
           +G L   GS ++     E  +M        +  V ++ G  +++A+ E
Sbjct: 323 DGRLYMWGSKIW----IEPHEMTAVN---EYKMVQVACGRQYTVALSE 363



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 67/251 (26%), Positives = 117/251 (46%), Gaps = 29/251 (11%)

Query: 2   RLLKSVVHNHVNVLTSRI--FMRSASGT--AVVSFGDGSQGALGLPTSLTGVGGDAYEPT 57
           RLL ++V   V +LT     F   A      + ++G+G  G LG   S T    +  EP 
Sbjct: 185 RLLTTLVDQGVPILTVECGEFHTVALSKDGEIWAWGNGEYGRLGNGESDTC---EVPEPI 241

Query: 58  RVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRG---ALESRATWNDPKRVE 114
                  +V S++AG   S A+T+NG +++WG N++ QLG G   A++     + P  VE
Sbjct: 242 EFFS-KDNVVSIAAGRDFSFALTDNGELYSWGGNSQNQLGIGGGLAMDVYNIESIPVLVE 300

Query: 115 GLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKI 174
             + ++V    A    ++A+ DDG L++WG                I P  + A+   K+
Sbjct: 301 AFNGLSVKQIAAGYDHAAAVTDDGRLYMWGSKIW------------IEPHEMTAVNEYKM 348

Query: 175 VKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPL------DSNIDRSSESDQ 228
           V+V+ G  + +A +E+G++F +G  +   +G+  +  +  P+      D NI   S  D 
Sbjct: 349 VQVACGRQYTVALSENGEVFTFGKGSSNCLGHGDRKNQLQPVQIEALADVNITSISCGDY 408

Query: 229 EISSSTIEKAQ 239
            + +     A+
Sbjct: 409 HMGAIATPHAE 419


>gi|33239431|ref|NP_776292.1| protein RCC2 [Mus musculus]
 gi|71152034|sp|Q8BK67.1|RCC2_MOUSE RecName: Full=Protein RCC2
 gi|26344982|dbj|BAC36140.1| unnamed protein product [Mus musculus]
 gi|55991474|gb|AAH86666.1| Regulator of chromosome condensation 2 [Mus musculus]
          Length = 520

 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 81/293 (27%), Positives = 128/293 (43%), Gaps = 35/293 (11%)

Query: 75  HSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAI 134
           HSL +T  G +W+WGRN + QLG G  +       P+ +E L    +  A      + A+
Sbjct: 159 HSLLITTEGKLWSWGRNEKGQLGHGDTKRVEA---PRLIEALSHEAIVLAACGRNHTLAL 215

Query: 135 GDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLF 194
            D GS++ +G++K GQLGLG        P+++    G+ I K++ G   ++     G L+
Sbjct: 216 TDTGSVFAFGENKMGQLGLGNQTDAVPSPAQI-MYNGQPITKMACGAEFSMLMDCKGNLY 274

Query: 195 GWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPI 254
            +G    G++G+            N D    +  +      E   + V+  +EK K   I
Sbjct: 275 SFGCPEYGQLGH------------NSDGKFIARAQRIEYDCELVPRRVAIFIEKTKDGQI 322

Query: 255 IWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFH- 313
           +  P +V    V D+ACG +H+LVL     + S G   YG+LG  +Q   M P  +    
Sbjct: 323 LPVPNVV----VRDVACGANHTLVLDSQKRVFSWGFGGYGRLGHAEQKDEMVPRLVKLFD 378

Query: 314 -----PVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPDNV 361
                   I +G   S A+ EV          G+  WG   +S+   M P  V
Sbjct: 379 FPGRGATQIYAGYTCSFAVSEV---------GGLFFWGATNTSRESTMYPKAV 422



 Score = 48.5 bits (114), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 50/175 (28%), Positives = 75/175 (42%), Gaps = 30/175 (17%)

Query: 66  VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAF 125
           +   + G  H+LA+T+ G+V+A+G N   QLG G      T   P   + +         
Sbjct: 202 IVLAACGRNHTLALTDTGSVFAFGENKMGQLGLG----NQTDAVPSPAQIMYNGQPITKM 257

Query: 126 ASGVVSSAIGD-DGSLWVWGKSKRGQLGL---GKDITEA--------IVPSRVEALAGEK 173
           A G   S + D  G+L+ +G  + GQLG    GK I  A        +VP RV A+  EK
Sbjct: 258 ACGAEFSMLMDCKGNLYSFGCPEYGQLGHNSDGKFIARAQRIEYDCELVPRRV-AIFIEK 316

Query: 174 -------------IVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSP 215
                        +  V+ G  H L      ++F WG+   GR+G+  +  E  P
Sbjct: 317 TKDGQILPVPNVVVRDVACGANHTLVLDSQKRVFSWGFGGYGRLGHAEQKDEMVP 371


>gi|345795744|ref|XP_535653.3| PREDICTED: probable E3 ubiquitin-protein ligase HERC3 [Canis lupus
           familiaris]
          Length = 1050

 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 79/288 (27%), Positives = 130/288 (45%), Gaps = 23/288 (7%)

Query: 28  AVVSFGDGSQGALGLPTS-LTGVGGDAYEPTRVPGLPSD-VTSVSAGHYHSLAVTNNGAV 85
           +V    DG     GL T    G   +  +P ++  L    +  V+ G  HSLA+++ G +
Sbjct: 46  SVFLLEDGEVYTCGLNTKGQLGHEREGNKPEQIGALADQHIVHVACGESHSLALSDRGQL 105

Query: 86  WAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGK 145
           ++WG  ++ QLG    E       P+ ++ L+Q  +           A+  DG  + WGK
Sbjct: 106 FSWGAGSDGQLGLMTTEDSVAV--PRLIQKLNQQTILQVSCGNWHCLALAADGQFFTWGK 163

Query: 146 SKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIG 205
           +  GQLGLGK+      P RV +L G  + +V+ G  H+ A +  G +FGWG +  G++G
Sbjct: 164 NSHGQLGLGKEYPSQASPQRVRSLEGIPLAQVAAGGAHSFALSLSGAVFGWGMNNAGQLG 223

Query: 206 NLGKALESSPLDSNIDRSSE----SDQEISSSTIEKAQKLVSEG-----------MEKEK 250
              +    SP    + R+ +    S  E  ++ + K+  + + G           M  E 
Sbjct: 224 LSDEEDRESPCHVKLLRTQKVVYISCGEEHTAVLTKSGGVFTFGAGSCGQLGHDSMNDEV 283

Query: 251 YMPIIWEPFLVEGVEVVDIACGFDHSLVL-GRNGVLLSCGSNVYGQLG 297
               + E   + G EV  IACG  H+L     +G++ + G    GQLG
Sbjct: 284 NPRRVLE---LMGSEVTQIACGRQHTLAFVPSSGLIYAFGCGAKGQLG 328



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 96/340 (28%), Positives = 149/340 (43%), Gaps = 43/340 (12%)

Query: 39  ALGLPTSLTGVGGDAYEPTRVPGLPSD--VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQL 96
           +LG P   T + G   EP +V G  SD  V  V+ G  HS+ +  +G V+  G N + QL
Sbjct: 8   SLGQPGISTNLQGIVAEP-QVCGFISDRSVKEVACGGNHSVFLLEDGEVYTCGLNTKGQL 66

Query: 97  GRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKD 156
           G          N P+++  L   ++         S A+ D G L+ WG    GQLGL   
Sbjct: 67  GH-----EREGNKPEQIGALADQHIVHVACGESHSLALSDRGQLFSWGAGSDGQLGLMTT 121

Query: 157 ITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGK------- 209
                VP  ++ L  + I++VS G  H LA   DG+ F WG ++ G++G LGK       
Sbjct: 122 EDSVAVPRLIQKLNQQTILQVSCGNWHCLALAADGQFFTWGKNSHGQLG-LGKEYPSQAS 180

Query: 210 -----ALESSPLDSNIDRSSESDQEISSSTI------EKAQKLVSEGMEKEKYMPIIWEP 258
                +LE  PL       + S     S  +         Q  +S+  ++E    +    
Sbjct: 181 PQRVRSLEGIPLAQVAAGGAHSFALSLSGAVFGWGMNNAGQLGLSDEEDRESPCHVK--- 237

Query: 259 FLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDI----NFHP 314
            L+   +VV I+CG +H+ VL ++G + + G+   GQLG +  +  + P  +        
Sbjct: 238 -LLRTQKVVYISCGEEHTAVLTKSGGVFTFGAGSCGQLGHDSMNDEVNPRRVLELMGSEV 296

Query: 315 VSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLG 354
             I+ G  H+LA   V SS +      I ++G     QLG
Sbjct: 297 TQIACGRQHTLAF--VPSSGL------IYAFGCGAKGQLG 328



 Score = 61.2 bits (147), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 63/244 (25%), Positives = 103/244 (42%), Gaps = 70/244 (28%)

Query: 136 DDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFG 195
           +DG ++  G + +GQLG  +   E   P ++ ALA + IV V+ G  H+LA ++ G+LF 
Sbjct: 51  EDGEVYTCGLNTKGQLGHER---EGNKPEQIGALADQHIVHVACGESHSLALSDRGQLFS 107

Query: 196 WGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPII 255
           WG  +DG++G +                     E S +     QKL  +           
Sbjct: 108 WGAGSDGQLGLMTT-------------------EDSVAVPRLIQKLNQQ----------- 137

Query: 256 WEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFHPV 315
                     ++ ++CG  H L L  +G   + G N +GQLG  K+    +P   +   V
Sbjct: 138 ---------TILQVSCGNWHCLALAADGQFFTWGKNSHGQLGLGKE----YPSQASPQRV 184

Query: 316 ---------SISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLG------RMGPDN 360
                     +++G  HS A+      +++G   G   WG N + QLG      R  P +
Sbjct: 185 RSLEGIPLAQVAAGGAHSFAL------SLSGAVFG---WGMNNAGQLGLSDEEDRESPCH 235

Query: 361 VPLV 364
           V L+
Sbjct: 236 VKLL 239



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 38/115 (33%), Positives = 60/115 (52%), Gaps = 20/115 (17%)

Query: 266 VVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDI----NFHPVSISSGL 321
           V ++ACG +HS+ L  +G + +CG N  GQLG E++  G  P  I    + H V ++ G 
Sbjct: 36  VKEVACGGNHSVFLLEDGEVYTCGLNTKGQLGHERE--GNKPEQIGALADQHIVHVACGE 93

Query: 322 GHSLAICEVRSSNVTGGARG-IVSWGWNRSSQLGRMGPDN---VPLVVEGLEGES 372
            HSLA+ +          RG + SWG     QLG M  ++   VP +++ L  ++
Sbjct: 94  SHSLALSD----------RGQLFSWGAGSDGQLGLMTTEDSVAVPRLIQKLNQQT 138


>gi|74140640|dbj|BAB27358.3| unnamed protein product [Mus musculus]
          Length = 576

 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 66/234 (28%), Positives = 109/234 (46%), Gaps = 45/234 (19%)

Query: 66  VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAF 125
           V  VS G  HS+AV + G V+AWG  +E QLG G  E +     P +++ L  + +    
Sbjct: 3   VDLVSCGKEHSVAVCHKGKVFAWGAGSEGQLGIG--EFKEISFMPTKIKALAGIKIIQVS 60

Query: 126 ASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHAL 185
                S A+ +DG ++ WG++  GQLGLGK+     +P +V++L G  + +V+ G  H+ 
Sbjct: 61  CGHYHSLALSEDGHVFSWGRNSEGQLGLGKNSRSQAIPQKVKSLEGIPLAQVAAGGTHSF 120

Query: 186 AQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEG 245
           A +  G  FGWG +  G++   G  +                                  
Sbjct: 121 ALSLTGTSFGWGSNRSGQLALSGNKV---------------------------------- 146

Query: 246 MEKEKYMPIIWEPFLV---EGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQL 296
             KE+    I++P  +   + + V+ I+CG++H+ VL   G + + G N  GQL
Sbjct: 147 --KEQ----IYKPHSIGALKNLSVIYISCGYEHTAVLTEEGQVFTFGGNSSGQL 194



 Score = 47.8 bits (112), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 48/186 (25%), Positives = 76/186 (40%), Gaps = 53/186 (28%)

Query: 177 VSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIE 236
           VS G  H++A    GK+F WG  ++G++G +G+  E S + + I                
Sbjct: 6   VSCGKEHSVAVCHKGKVFAWGAGSEGQLG-IGEFKEISFMPTKIKA-------------- 50

Query: 237 KAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQL 296
                                   + G++++ ++CG  HSL L  +G + S G N  GQL
Sbjct: 51  ------------------------LAGIKIIQVSCGHYHSLALSEDGHVFSWGRNSEGQL 86

Query: 297 GREKQDMGM-FPVDIN----FHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSS 351
           G  K       P  +          +++G  HS A+      ++TG + G   WG NRS 
Sbjct: 87  GLGKNSRSQAIPQKVKSLEGIPLAQVAAGGTHSFAL------SLTGTSFG---WGSNRSG 137

Query: 352 QLGRMG 357
           QL   G
Sbjct: 138 QLALSG 143



 Score = 39.3 bits (90), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 33/111 (29%), Positives = 53/111 (47%), Gaps = 19/111 (17%)

Query: 269 IACGFDHSLVLGRNGVLLSCGSNVYGQLGR-EKQDMGMFPVDIN----FHPVSISSGLGH 323
           ++CG +HS+ +   G + + G+   GQLG  E +++   P  I        + +S G  H
Sbjct: 6   VSCGKEHSVAVCHKGKVFAWGAGSEGQLGIGEFKEISFMPTKIKALAGIKIIQVSCGHYH 65

Query: 324 SLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPDN----VPLVVEGLEG 370
           SLA+ E            + SWG N   QLG +G ++    +P  V+ LEG
Sbjct: 66  SLALSE---------DGHVFSWGRNSEGQLG-LGKNSRSQAIPQKVKSLEG 106



 Score = 37.7 bits (86), Expect = 8.2,   Method: Compositional matrix adjust.
 Identities = 32/131 (24%), Positives = 55/131 (41%), Gaps = 19/131 (14%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTS--------VSAGHYHSLAVT 80
           V S+G  S+G LGL  +           +R   +P  V S        V+AG  HS A++
Sbjct: 75  VFSWGRNSEGQLGLGKN-----------SRSQAIPQKVKSLEGIPLAQVAAGGTHSFALS 123

Query: 81  NNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSL 140
             G  + WG N   QL     + +     P  +  L  ++V         ++ + ++G +
Sbjct: 124 LTGTSFGWGSNRSGQLALSGNKVKEQIYKPHSIGALKNLSVIYISCGYEHTAVLTEEGQV 183

Query: 141 WVWGKSKRGQL 151
           + +G +  GQL
Sbjct: 184 FTFGGNSSGQL 194


>gi|291414169|ref|XP_002723335.1| PREDICTED: regulator of chromosome condensation 2 [Oryctolagus
           cuniculus]
          Length = 560

 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 81/293 (27%), Positives = 130/293 (44%), Gaps = 35/293 (11%)

Query: 75  HSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAI 134
           HSL +T  G +W+WGRN + QLG G  +       P+ +EGL    + +A      + A+
Sbjct: 199 HSLLITTEGKLWSWGRNEKGQLGHGDTKRVEA---PRLIEGLSHEVIVSAACGRNHTLAL 255

Query: 135 GDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLF 194
            + GS++ +G++K GQLGLG        P+++    G+ I K++ G   ++     G L+
Sbjct: 256 TETGSVFAFGENKMGQLGLGNQTDAVPSPAQI-MYNGQPITKMACGAEFSMITDCKGNLY 314

Query: 195 GWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPI 254
            +G    G++G+            N D    +  +      E   + V+  +EK K   I
Sbjct: 315 SFGCPEYGQLGH------------NSDGKFIARAQRIEYDCELVPRRVAIFIEKTKDGQI 362

Query: 255 IWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFHP 314
           +  P +V    V D+ACG +H+LVL     + S G   YG+LG  +Q   M P  +    
Sbjct: 363 LPVPNVV----VRDVACGANHTLVLDSQKRVFSWGFGGYGRLGHAEQKDEMVPRLVKLFD 418

Query: 315 V------SISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPDNV 361
                   I +G   S A+ EV          G+  WG   +S+   M P  V
Sbjct: 419 FPGRGASQIYAGYTCSFAVSEV---------GGLFFWGATNTSRESTMYPKAV 462



 Score = 52.8 bits (125), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 56/186 (30%), Positives = 80/186 (43%), Gaps = 31/186 (16%)

Query: 56  PTRVPGLPSDV-TSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVE 114
           P  + GL  +V  S + G  H+LA+T  G+V+A+G N   QLG G      T   P   +
Sbjct: 231 PRLIEGLSHEVIVSAACGRNHTLALTETGSVFAFGENKMGQLGLG----NQTDAVPSPAQ 286

Query: 115 GLDQVNVCAAFASGVVSSAIGD-DGSLWVWGKSKRGQLGL---GKDITEA--------IV 162
            +         A G   S I D  G+L+ +G  + GQLG    GK I  A        +V
Sbjct: 287 IMYNGQPITKMACGAEFSMITDCKGNLYSFGCPEYGQLGHNSDGKFIARAQRIEYDCELV 346

Query: 163 PSRVEALAGEK-------------IVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGK 209
           P RV A+  EK             +  V+ G  H L      ++F WG+   GR+G+  +
Sbjct: 347 PRRV-AIFIEKTKDGQILPVPNVVVRDVACGANHTLVLDSQKRVFSWGFGGYGRLGHAEQ 405

Query: 210 ALESSP 215
             E  P
Sbjct: 406 KDEMVP 411


>gi|338723767|ref|XP_001496703.3| PREDICTED: probable E3 ubiquitin-protein ligase HERC3 [Equus
           caballus]
          Length = 1050

 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 79/288 (27%), Positives = 131/288 (45%), Gaps = 23/288 (7%)

Query: 28  AVVSFGDGSQGALGLPTS-LTGVGGDAYEPTRVPGLPSD-VTSVSAGHYHSLAVTNNGAV 85
           +V    DG     GL T    G   +  +P ++  L    +  V+ G  H+LA+++ G +
Sbjct: 46  SVFLLEDGEVYTCGLNTKGQLGHEREGNKPEQIGALADQHIVHVACGESHNLALSDRGQL 105

Query: 86  WAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGK 145
           ++WG  ++ QLG    E       P+ ++ L+Q  +         S A+  DG  + WGK
Sbjct: 106 FSWGAGSDGQLGLMTTEDAVAV--PRVIQKLNQQTILQVSCGNWHSLALAADGQFFTWGK 163

Query: 146 SKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIG 205
           +  GQLGLGK+      P RV +L G  + +V+ G  H+ A +  G +FGWG +  G++G
Sbjct: 164 NSHGQLGLGKEFPSQASPQRVRSLEGIPLAQVAAGGAHSFALSLSGAVFGWGMNNAGQLG 223

Query: 206 NLGKALESSPLDSNIDRSSE----SDQEISSSTIEKAQKLVSEG-----------MEKEK 250
              +    SP    + R+ +    S  E  ++ + K+  + + G           M  E 
Sbjct: 224 LSDEEDRESPCHVKLLRTQKVVYISCGEEHTAVLTKSGGVFTFGAGSCGQLGHDSMNDEV 283

Query: 251 YMPIIWEPFLVEGVEVVDIACGFDHSLVL-GRNGVLLSCGSNVYGQLG 297
               + E   + G EV  IACG  H+L     +G++ + G    GQLG
Sbjct: 284 NPRRVLE---LMGSEVTQIACGRQHTLAFVPSSGLIYAFGCGARGQLG 328



 Score = 82.0 bits (201), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 94/330 (28%), Positives = 147/330 (44%), Gaps = 39/330 (11%)

Query: 39  ALGLPTSLTGVGGDAYEPTRVPGLPSD--VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQL 96
           +LG P   T + G   EP +V G  SD  V  V+ G  HS+ +  +G V+  G N + QL
Sbjct: 8   SLGQPGISTNLQGIVAEP-QVCGFISDRSVKEVACGGNHSVFLLEDGEVYTCGLNTKGQL 66

Query: 97  GRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKD 156
           G          N P+++  L   ++         + A+ D G L+ WG    GQLGL   
Sbjct: 67  GH-----EREGNKPEQIGALADQHIVHVACGESHNLALSDRGQLFSWGAGSDGQLGLMTT 121

Query: 157 ITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPL 216
                VP  ++ L  + I++VS G  H+LA   DG+ F WG ++ G++G LGK   S   
Sbjct: 122 EDAVAVPRVIQKLNQQTILQVSCGNWHSLALAADGQFFTWGKNSHGQLG-LGKEFPSQAS 180

Query: 217 DSNIDRSSESDQEIS-------SSTIEKAQKLVSEGM----------EKEKYMPIIWEPF 259
              + RS E             S  +  +  +   GM          E+++  P   +  
Sbjct: 181 PQRV-RSLEGIPLAQVAAGGAHSFALSLSGAVFGWGMNNAGQLGLSDEEDRESPCHVK-- 237

Query: 260 LVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDI----NFHPV 315
           L+   +VV I+CG +H+ VL ++G + + G+   GQLG +  +  + P  +         
Sbjct: 238 LLRTQKVVYISCGEEHTAVLTKSGGVFTFGAGSCGQLGHDSMNDEVNPRRVLELMGSEVT 297

Query: 316 SISSGLGHSLAICEVRSSNVT----GGARG 341
            I+ G  H+LA   V SS +      GARG
Sbjct: 298 QIACGRQHTLAF--VPSSGLIYAFGCGARG 325



 Score = 62.0 bits (149), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 63/244 (25%), Positives = 102/244 (41%), Gaps = 70/244 (28%)

Query: 136 DDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFG 195
           +DG ++  G + +GQLG  +   E   P ++ ALA + IV V+ G  H LA ++ G+LF 
Sbjct: 51  EDGEVYTCGLNTKGQLGHER---EGNKPEQIGALADQHIVHVACGESHNLALSDRGQLFS 107

Query: 196 WGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPII 255
           WG  +DG++G +                +  D       I+K  +               
Sbjct: 108 WGAGSDGQLGLM----------------TTEDAVAVPRVIQKLNQQT------------- 138

Query: 256 WEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFHPV 315
                     ++ ++CG  HSL L  +G   + G N +GQLG  K+    FP   +   V
Sbjct: 139 ----------ILQVSCGNWHSLALAADGQFFTWGKNSHGQLGLGKE----FPSQASPQRV 184

Query: 316 ---------SISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLG------RMGPDN 360
                     +++G  HS A+      +++G   G   WG N + QLG      R  P +
Sbjct: 185 RSLEGIPLAQVAAGGAHSFAL------SLSGAVFG---WGMNNAGQLGLSDEEDRESPCH 235

Query: 361 VPLV 364
           V L+
Sbjct: 236 VKLL 239



 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 38/115 (33%), Positives = 60/115 (52%), Gaps = 20/115 (17%)

Query: 266 VVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDI----NFHPVSISSGL 321
           V ++ACG +HS+ L  +G + +CG N  GQLG E++  G  P  I    + H V ++ G 
Sbjct: 36  VKEVACGGNHSVFLLEDGEVYTCGLNTKGQLGHERE--GNKPEQIGALADQHIVHVACGE 93

Query: 322 GHSLAICEVRSSNVTGGARG-IVSWGWNRSSQLGRMGPDN---VPLVVEGLEGES 372
            H+LA+ +          RG + SWG     QLG M  ++   VP V++ L  ++
Sbjct: 94  SHNLALSD----------RGQLFSWGAGSDGQLGLMTTEDAVAVPRVIQKLNQQT 138


>gi|321474724|gb|EFX85688.1| hypothetical protein DAPPUDRAFT_98215 [Daphnia pulex]
          Length = 1052

 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 99/338 (29%), Positives = 136/338 (40%), Gaps = 62/338 (18%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPS-DVTSVSAGHYHSLAVTNNGAVWA 87
           + SFG    G LG   S T       EP  V GL + ++T V+ G  H+LA    G V+A
Sbjct: 55  LFSFGLNDYGQLGHCRSRTRA-----EP--VDGLEAHNITQVACGAQHTLAQNEWGEVFA 107

Query: 88  WGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSK 147
           WG N+  QLG    ES      PK V+ L    V         S A+ + G ++ WG + 
Sbjct: 108 WGSNSNGQLGLNVEESMMP--TPKMVKSLATKQVVQIACGRSHSMALTNVGEIYCWGSNS 165

Query: 148 RGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNL 207
            GQLGLG   T    P  V+ L G  I  +S G   + A T  G ++GWG ++ G++G  
Sbjct: 166 HGQLGLGSSGTPETKPCLVKLLQGIPISHISCGADFSFAVTPSGAVYGWGKNSFGQLG-- 223

Query: 208 GKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVV 267
                   L    DR   +             +L S   ++  Y                
Sbjct: 224 --------LGDTTDRPQPT-------------QLKSLRFQRVTY---------------- 246

Query: 268 DIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDI----NFHPVSISSGLGH 323
            I CG DH+  L R+G + + G+ +YGQLG       M P  +          I  G  H
Sbjct: 247 -IRCGMDHTAALTRDGGVFTFGAGMYGQLGHCTSANEMLPRKVLELMGTTVTQICCGRCH 305

Query: 324 SLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPDNV 361
           +LA        V    R I ++G   S QLG     NV
Sbjct: 306 TLAF-------VPSKGR-IYAFGLGGSGQLGTKSTANV 335



 Score = 68.2 bits (165), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 70/255 (27%), Positives = 113/255 (44%), Gaps = 27/255 (10%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVP---GLPSDVTSVSAGHYHSLAVTNNGAV 85
           +  +G  S G LGL +S    G    +P  V    G+P  ++ +S G   S AVT +GAV
Sbjct: 158 IYCWGSNSHGQLGLGSS----GTPETKPCLVKLLQGIP--ISHISCGADFSFAVTPSGAV 211

Query: 86  WAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGK 145
           + WG+N+  QLG G    R     P +++ L    V         ++A+  DG ++ +G 
Sbjct: 212 YGWGKNSFGQLGLGDTTDRP---QPTQLKSLRFQRVTYIRCGMDHTAALTRDGGVFTFGA 268

Query: 146 SKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQT-EDGKLFGWGYSADGRI 204
              GQLG      E ++P +V  L G  + ++  G  H LA     G+++ +G    G++
Sbjct: 269 GMYGQLGHCTSANE-MLPRKVLELMGTTVTQICCGRCHTLAFVPSKGRIYAFGLGGSGQL 327

Query: 205 GNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGV 264
           G    A  +SP      +      E S+++I+  + L +E  E              + V
Sbjct: 328 GTKSTANVNSP------QLVIGPWETSNNSIKDVKDLATETAEA-------LSAIQSKRV 374

Query: 265 EVVDIACGFDHSLVL 279
            V +I CG D S  L
Sbjct: 375 VVRNIFCGGDQSFSL 389



 Score = 49.3 bits (116), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 62/242 (25%), Positives = 93/242 (38%), Gaps = 64/242 (26%)

Query: 140 LWVWGKSKRGQLGLGKDITEAIVPSRVEALA-GEKIVKVSFGWGHALAQTEDGKLFGWGY 198
           ++ WG+ K G+LGLG    E I   R       + IV+V  G  H +   +DGKLF +G 
Sbjct: 1   MFCWGRMKHGELGLGGLEEEIITSPRASPFTLVDDIVQVGCGENHTILVMKDGKLFSFGL 60

Query: 199 SADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEP 258
           +  G++G+      + P+D                                         
Sbjct: 61  NDYGQLGHCRSRTRAEPVDG---------------------------------------- 80

Query: 259 FLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVD------INF 312
             +E   +  +ACG  H+L     G + + GSN  GQLG   ++  M P           
Sbjct: 81  --LEAHNITQVACGAQHTLAQNEWGEVFAWGSNSNGQLGLNVEE-SMMPTPKMVKSLATK 137

Query: 313 HPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMG----PDNVPLVVEGL 368
             V I+ G  HS+A+  V           I  WG N   QLG +G    P+  P +V+ L
Sbjct: 138 QVVQIACGRSHSMALTNVGE---------IYCWGSNSHGQLG-LGSSGTPETKPCLVKLL 187

Query: 369 EG 370
           +G
Sbjct: 188 QG 189


>gi|357149503|ref|XP_003575134.1| PREDICTED: E3 ubiquitin-protein ligase HERC2-like [Brachypodium
           distachyon]
          Length = 448

 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 89/320 (27%), Positives = 148/320 (46%), Gaps = 40/320 (12%)

Query: 58  RVPGLPSD-VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGL 116
            VP  P   V  VSAG  HS+A+ ++ AV +WGR  + QLG G  E R     P  + G 
Sbjct: 13  EVPEAPEQTVALVSAGANHSVALLSSKAVCSWGRGEDGQLGHGDAEDRPV---PTLLSGF 69

Query: 117 DQVNVCAAFASGV-VSSAIGDDG-SLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKI 174
           D   + +    G   ++A  D+   L+ WG    G+LG G   ++   P  +EAL G KI
Sbjct: 70  DVPGIASVVICGADHTTAYSDEQMQLYSWGWGDFGRLGHGNS-SDVFHPQPIEALQGIKI 128

Query: 175 VKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSST 234
            +++ G  H LA T+ G++  WG + +G++G LG   E S L   I        ++ ++ 
Sbjct: 129 KQIACGDSHCLAVTDAGQVHSWGRNQNGQLG-LGNT-EDSLLPQKIHAFEGVCVKMIAAG 186

Query: 235 IEKAQKLVSE----------------GMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLV 278
            E    ++ +                G   ++ +P   +   VEG ++V +ACG+ H++ 
Sbjct: 187 AEHTAAILEDGDLYGWGWGQYGNLGLGDRNDRLVPE--KVSSVEGEKMVLVACGWRHTVT 244

Query: 279 LGRNGVLLSCGSNVYGQLGREKQDMGMFPVDI----NFHPVSISSGLGHSLAICEVRSSN 334
           +  +G L + G + YGQLG    +  + P  +    +     I+ G  H++A+       
Sbjct: 245 VSSSGDLYTYGWSKYGQLGHGDFEDHLVPHKLEALKDRFISQIAGGWRHTMAV------- 297

Query: 335 VTGGARGIVSWGWNRSSQLG 354
              G   +  WGWN+  Q+G
Sbjct: 298 --AGDGKLYGWGWNKFGQVG 315



 Score = 89.4 bits (220), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 78/271 (28%), Positives = 116/271 (42%), Gaps = 50/271 (18%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPS-DVTSVSAGHYHSLAVTNNGAVWA 87
           V S+G    G LGL     G   D+  P ++       V  ++AG  H+ A+  +G ++ 
Sbjct: 147 VHSWGRNQNGQLGL-----GNTEDSLLPQKIHAFEGVCVKMIAAGAEHTAAILEDGDLYG 201

Query: 88  WGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSK 147
           WG      LG G    R        VEG   V V   +   V  S+ GD   L+ +G SK
Sbjct: 202 WGWGQYGNLGLGDRNDRLVPEKVSSVEGEKMVLVACGWRHTVTVSSSGD---LYTYGWSK 258

Query: 148 RGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNL 207
            GQLG G D  + +VP ++EAL    I +++ GW H +A   DGKL+GWG++  G++G  
Sbjct: 259 YGQLGHG-DFEDHLVPHKLEALKDRFISQIAGGWRHTMAVAGDGKLYGWGWNKFGQVG-- 315

Query: 208 GKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVV 267
                   +  N+D  S                            P+  +    +  +V 
Sbjct: 316 --------VADNVDHCS----------------------------PV--QVIFPDEQKVA 337

Query: 268 DIACGFDHSLVLGRNGVLLSCGSNVYGQLGR 298
            +ACG+ H+L L  N  + S G    GQLG 
Sbjct: 338 QVACGWRHTLALTENKNVFSWGRGTSGQLGH 368



 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 63/242 (26%), Positives = 109/242 (45%), Gaps = 23/242 (9%)

Query: 3   LLKSVVHNHVNVLTSRIFMRSASGTAVVSFGD------GSQGALGLPTSLTGVGGDAYEP 56
           LL   +H    V    I   +    A++  GD      G  G LGL     G   D   P
Sbjct: 167 LLPQKIHAFEGVCVKMIAAGAEHTAAILEDGDLYGWGWGQYGNLGL-----GDRNDRLVP 221

Query: 57  TRVPGLPSD-VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEG 115
            +V  +  + +  V+ G  H++ V+++G ++ +G +   QLG G  E       P ++E 
Sbjct: 222 EKVSSVEGEKMVLVACGWRHTVTVSSSGDLYTYGWSKYGQLGHGDFEDHLV---PHKLEA 278

Query: 116 LDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIV 175
           L    +         + A+  DG L+ WG +K GQ+G+  ++ +   P +V     +K+ 
Sbjct: 279 LKDRFISQIAGGWRHTMAVAGDGKLYGWGWNKFGQVGVADNV-DHCSPVQVIFPDEQKVA 337

Query: 176 KVSFGWGHALAQTEDGKLFGWGYSADGRIG-------NLGKALESSPLDSNIDRSSESDQ 228
           +V+ GW H LA TE+  +F WG    G++G       N  K +++  LD    ++ ES +
Sbjct: 338 QVACGWRHTLALTENKNVFSWGRGTSGQLGHGEIIDRNTPKMIDALSLDGYACKNLESSK 397

Query: 229 EI 230
            +
Sbjct: 398 AV 399



 Score = 48.9 bits (115), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 62/240 (25%), Positives = 92/240 (38%), Gaps = 64/240 (26%)

Query: 143 WGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSF-GWGHALAQT-EDGKLFGWGYSA 200
           WG+ + GQLG G D  +  VP+ +       I  V   G  H  A + E  +L+ WG+  
Sbjct: 44  WGRGEDGQLGHG-DAEDRPVPTLLSGFDVPGIASVVICGADHTTAYSDEQMQLYSWGWGD 102

Query: 201 DGRIG--NLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEP 258
            GR+G  N        P+++                                        
Sbjct: 103 FGRLGHGNSSDVFHPQPIEA---------------------------------------- 122

Query: 259 FLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDIN-FHPVS- 316
             ++G+++  IACG  H L +   G + S G N  GQLG    +  + P  I+ F  V  
Sbjct: 123 --LQGIKIKQIACGDSHCLAVTDAGQVHSWGRNQNGQLGLGNTEDSLLPQKIHAFEGVCV 180

Query: 317 --ISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPDN---VPLVVEGLEGE 371
             I++G  H+ AI E            +  WGW +   LG +G  N   VP  V  +EGE
Sbjct: 181 KMIAAGAEHTAAILEDGD---------LYGWGWGQYGNLG-LGDRNDRLVPEKVSSVEGE 230


>gi|159039902|ref|YP_001539155.1| chromosome condensation regulator RCC1 [Salinispora arenicola
           CNS-205]
 gi|157918737|gb|ABW00165.1| regulator of chromosome condensation RCC1 [Salinispora arenicola
           CNS-205]
          Length = 546

 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 97/333 (29%), Positives = 149/333 (44%), Gaps = 30/333 (9%)

Query: 23  SASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTS--VSAGHYHSLAVT 80
           +A+GT V+++GD S G LG      G G D+  P  V  LP+ VT+  V+AG  HS+A+T
Sbjct: 103 TAAGT-VLAWGDNSHGQLG-----DGTGADSLTPVGV-SLPAGVTASAVAAGRDHSVALT 155

Query: 81  NNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSL 140
           + G V AWG N+  QLG G +  R+T   P  V       V A  A    S A+   G++
Sbjct: 156 SAGTVLAWGGNSFGQLGDGTVVDRST---PVAVALPPSTTVTAVAAGATHSVALTSAGTV 212

Query: 141 WVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSA 200
             WG +  GQLG G  + +   P  V       +  V+ G  H++A T  G +  WG + 
Sbjct: 213 LAWGGNPFGQLGDGT-VVDRSTPVAVALPPSTTVTAVAAGGNHSVALTSAGTVLAWGRNF 271

Query: 201 DGRIGNLGKALESSP----LDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYM---- 252
            G++G+      S+P    L + +  S+ +   I S  +  A  +++ G      +    
Sbjct: 272 FGQLGDGTVVDRSTPTVVSLPAGVTASAVAAGRIHSLALTTAGGVLAWGNNTFGQLGDGT 331

Query: 253 ----PIIWEPFLVEGVEVVDIAC-GFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFP 307
                      L     +  I+     HS+ +   G  LS G N+ GQLG         P
Sbjct: 332 TTTSSTPVSVTLPAATTITAISARDSQHSVAMTSAGAALSWGRNLRGQLGDGTTTTRSTP 391

Query: 308 VDINFHP----VSISSGLGHSLAICEVRSSNVT 336
           VD++        +I++G  HSLA+    +S  T
Sbjct: 392 VDVHLPTGVTVTAIAAGDDHSLALTAPPTSTTT 424



 Score = 47.8 bits (112), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 53/220 (24%), Positives = 85/220 (38%), Gaps = 54/220 (24%)

Query: 139 SLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGY 198
           ++  WG +  G+LG G   T +  P  V   A    V ++ G  H++A T  G +  WG 
Sbjct: 55  TILAWGSNFFGELGNGT-TTNSSTPVDVSLPADTAAVAIAAGDAHSVALTAAGTVLAWGD 113

Query: 199 SADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEP 258
           ++ G++G                                      +G   +   P+    
Sbjct: 114 NSHGQLG--------------------------------------DGTGADSLTPVGVS- 134

Query: 259 FLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFHP---- 314
            L  GV    +A G DHS+ L   G +L+ G N +GQLG         PV +   P    
Sbjct: 135 -LPAGVTASAVAAGRDHSVALTSAGTVLAWGGNSFGQLGDGTVVDRSTPVAVALPPSTTV 193

Query: 315 VSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLG 354
            ++++G  HS+A+           A  +++WG N   QLG
Sbjct: 194 TAVAAGATHSVALTS---------AGTVLAWGGNPFGQLG 224


>gi|291223965|ref|XP_002731978.1| PREDICTED: cytochrome P450, family 4, subfamily F, polypeptide
           2-like [Saccoglossus kowalevskii]
          Length = 1049

 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 82/290 (28%), Positives = 130/290 (44%), Gaps = 60/290 (20%)

Query: 38  GALGLPT--SLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQ 95
           G LG+P   S T +      PT++     +VTS++AG  HSLAVTN+G +W+WG   + Q
Sbjct: 138 GQLGIPEIDSFTAI------PTKIQIFSRNVTSIAAGLRHSLAVTNDGKLWSWGSARKGQ 191

Query: 96  LGRGALES--RATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQL-- 151
           LG    ++  +     PK+V  L+  N+ +  +    S+A+   G++++WG +K  QL  
Sbjct: 192 LGNDQSKTGYQLLQRVPKQVHKLE--NISSVSSGSYHSTALTACGNMYLWGSNKHNQLTN 249

Query: 152 ----------GLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSAD 201
                        +DI        +E   G +I+ V  GW H LA T D  +FGWG    
Sbjct: 250 SVQGVVQSGGSSKEDILPVPTKLNLELFGGRQILAVHSGWTHILAITHDSNVFGWG---- 305

Query: 202 GRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLV 261
                               R+  S   IS +    A+K V++  E            LV
Sbjct: 306 --------------------RNDYSQLGISLTGNNCAKKDVTKPKE------------LV 333

Query: 262 EGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDIN 311
              ++  IACG +H+L L  +  +L+ G N +G  G  K++  + P  I+
Sbjct: 334 ILKDIKQIACGSEHNLALSDDNKVLAWGWNEHGSCGNGKEENVLTPQVID 383



 Score = 81.3 bits (199), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 94/383 (24%), Positives = 169/383 (44%), Gaps = 61/383 (15%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPS-DVTSVSAGHYHSLAVTNNGAVWA 87
           + S+G  S G LGL     G   D  +P ++  +P   +  V+ G  H+L +T+ GA+++
Sbjct: 27  MFSWGANSYGQLGL-----GHQDDKSKPEKILKIPDGKIVDVTGGGGHTLLLTDCGAIYS 81

Query: 88  WGRNNEVQLGRGALESRATWNDPKRVEGLDQV-NVCAAFASGVVSSAIGDDGSLWVWGKS 146
            G N++ QLG G  ++ + +   KR++ L  V  V   +   +  + +GD   L+ WG +
Sbjct: 82  CGWNSKGQLGLGHTDNLSVF---KRIDHLPPVIKVTCGWDFCLAITEVGD---LYAWGCN 135

Query: 147 KRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGN 206
             GQLG+ +  +   +P++++  +   +  ++ G  H+LA T DGKL+ WG +  G++GN
Sbjct: 136 VFGQLGIPEIDSFTAIPTKIQIFS-RNVTSIAAGLRHSLAVTNDGKLWSWGSARKGQLGN 194

Query: 207 ---------LGKALESSPLDSNIDRSSESDQEISSSTI---------EKAQKLV------ 242
                    L +  +      NI   S      ++ T           K  +L       
Sbjct: 195 DQSKTGYQLLQRVPKQVHKLENISSVSSGSYHSTALTACGNMYLWGSNKHNQLTNSVQGV 254

Query: 243 --SEGMEKEKYMPIIWEPF--LVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGR 298
             S G  KE  +P+  +    L  G +++ +  G+ H L +  +  +   G N Y QLG 
Sbjct: 255 VQSGGSSKEDILPVPTKLNLELFGGRQILAVHSGWTHILAITHDSNVFGWGRNDYSQLGI 314

Query: 299 E-------KQDMGMFPVDINFHPV-SISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRS 350
                   K+D+      +    +  I+ G  H+LA+ +            +++WGWN  
Sbjct: 315 SLTGNNCAKKDVTKPKELVILKDIKQIACGSEHNLALSD---------DNKVLAWGWNEH 365

Query: 351 SQLGRMGPDNV--PLVVEGLEGE 371
              G    +NV  P V++ L  E
Sbjct: 366 GSCGNGKEENVLTPQVIDDLAKE 388



 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 33/110 (30%), Positives = 54/110 (49%), Gaps = 2/110 (1%)

Query: 66  VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAF 125
           + +V +G  H LA+T++  V+ WGRN+  QLG     +     D  + + L  +      
Sbjct: 282 ILAVHSGWTHILAITHDSNVFGWGRNDYSQLGISLTGNNCAKKDVTKPKELVILKDIKQI 341

Query: 126 ASGVVSS-AIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKI 174
           A G   + A+ DD  +  WG ++ G  G GK+    + P  ++ LA EKI
Sbjct: 342 ACGSEHNLALSDDNKVLAWGWNEHGSCGNGKE-ENVLTPQVIDDLAKEKI 390


>gi|326507328|dbj|BAJ95741.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 343

 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 68/201 (33%), Positives = 96/201 (47%), Gaps = 10/201 (4%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPS-DVTSVSAGHYHSLAVTNNGAVWA 87
           V+S+G    G LGL T+      D+  P  +       V  ++AG  H+ AVT +G ++ 
Sbjct: 140 VLSWGRNQNGQLGLGTTE-----DSLLPQTIQAFEGISVKMIAAGAEHTAAVTEDGDIYG 194

Query: 88  WGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSK 147
           WG      LG G    R        VEG   V V   +   +  S+    GSL+ +G SK
Sbjct: 195 WGWGRYGNLGLGDRNDRFVPEKVSSVEGDKMVLVACGWRHTITVSS---SGSLYTYGWSK 251

Query: 148 RGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNL 207
            GQLG G D  + +VP +VEAL      ++S GW H +A T DGKL+GWG++  G++G  
Sbjct: 252 YGQLGHG-DFEDHLVPHKVEALKDSSTSQISGGWRHTMALTSDGKLYGWGWNKFGQVGAG 310

Query: 208 GKALESSPLDSNIDRSSESDQ 228
             A   SP   N     +  Q
Sbjct: 311 DNADHCSPAQVNFPEEQKVAQ 331



 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 81/304 (26%), Positives = 130/304 (42%), Gaps = 54/304 (17%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPS-DVTSVSAGHYHSLAVTNNGAVWA 87
           V S+G G  G LG   S      D + P  V  L    +  ++ G  H LAVT  G V +
Sbjct: 88  VYSWGWGDFGRLGHGNST-----DVFTPQPVKALQGIKIKQLACGDSHCLAVTMAGEVLS 142

Query: 88  WGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSK 147
           WGRN   QLG G  E       P+ ++  + ++V    A    ++A+ +DG ++ WG  +
Sbjct: 143 WGRNQNGQLGLGTTEDSLL---PQTIQAFEGISVKMIAAGAEHTAAVTEDGDIYGWGWGR 199

Query: 148 RGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNL 207
            G LGLG D  +  VP +V ++ G+K+V V+ GW H +  +  G L+ +G+S  G++G+ 
Sbjct: 200 YGNLGLG-DRNDRFVPEKVSSVEGDKMVLVACGWRHTITVSSSGSLYTYGWSKYGQLGH- 257

Query: 208 GKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVV 267
                    D  +    E+ ++ S+S I                                
Sbjct: 258 -----GDFEDHLVPHKVEALKDSSTSQISG------------------------------ 282

Query: 268 DIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINF----HPVSISSGLGH 323
               G+ H++ L  +G L   G N +GQ+G         P  +NF        ++ G  H
Sbjct: 283 ----GWRHTMALTSDGKLYGWGWNKFGQVGAGDNADHCSPAQVNFPEEQKVAQVACGWRH 338

Query: 324 SLAI 327
           +LA 
Sbjct: 339 TLAF 342



 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 84/313 (26%), Positives = 139/313 (44%), Gaps = 38/313 (12%)

Query: 63  PSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVC 122
           P  V  VSAG  HS+A+     +  WGR  + QLG G  E R     P  + G D   + 
Sbjct: 13  PPAVVLVSAGASHSVALLAGNVLCTWGRGEDGQLGHGDAEDRLV---PTVISGFDAPGIT 69

Query: 123 AAFASGVVSSAIGDD-GSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGW 181
           +       ++A  +D   ++ WG    G+LG G   T+   P  V+AL G KI +++ G 
Sbjct: 70  SVICGADHTTAYSEDEHQVYSWGWGDFGRLGHGNS-TDVFTPQPVKALQGIKIKQLACGD 128

Query: 182 GHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKL 241
            H LA T  G++  WG + +G++G LG   E S L   I        ++ ++  E    +
Sbjct: 129 SHCLAVTMAGEVLSWGRNQNGQLG-LGTT-EDSLLPQTIQAFEGISVKMIAAGAEHTAAV 186

Query: 242 VSE----------------GMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVL 285
             +                G   ++++P   +   VEG ++V +ACG+ H++ +  +G L
Sbjct: 187 TEDGDIYGWGWGRYGNLGLGDRNDRFVPE--KVSSVEGDKMVLVACGWRHTITVSSSGSL 244

Query: 286 LSCGSNVYGQLGREKQDMGMFPVDI----NFHPVSISSGLGHSLAICEVRSSNVTGGARG 341
            + G + YGQLG    +  + P  +    +     IS G  H++A+              
Sbjct: 245 YTYGWSKYGQLGHGDFEDHLVPHKVEALKDSSTSQISGGWRHTMALTSDGK--------- 295

Query: 342 IVSWGWNRSSQLG 354
           +  WGWN+  Q+G
Sbjct: 296 LYGWGWNKFGQVG 308



 Score = 62.4 bits (150), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 48/161 (29%), Positives = 79/161 (49%), Gaps = 10/161 (6%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSD-VTSVSAGHYHSLAVTNNGAVWA 87
           +  +G G  G LGL     G   D + P +V  +  D +  V+ G  H++ V+++G+++ 
Sbjct: 192 IYGWGWGRYGNLGL-----GDRNDRFVPEKVSSVEGDKMVLVACGWRHTITVSSSGSLYT 246

Query: 88  WGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSK 147
           +G +   QLG G  E       P +VE L   +          + A+  DG L+ WG +K
Sbjct: 247 YGWSKYGQLGHGDFEDHLV---PHKVEALKDSSTSQISGGWRHTMALTSDGKLYGWGWNK 303

Query: 148 RGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQT 188
            GQ+G G D  +   P++V     +K+ +V+ GW H LA T
Sbjct: 304 FGQVGAG-DNADHCSPAQVNFPEEQKVAQVACGWRHTLAFT 343


>gi|327273159|ref|XP_003221348.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC3-like [Anolis
           carolinensis]
          Length = 1109

 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 65/234 (27%), Positives = 108/234 (46%), Gaps = 42/234 (17%)

Query: 66  VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAF 125
           +  V+ G  HSLA+++ G +++WG  ++ QLG    E       P+ ++ L+Q  +    
Sbjct: 145 IIHVACGESHSLALSDQGRLFSWGAGSDGQLGLTTTEDSVAV--PRLIKKLNQEMILQVS 202

Query: 126 ASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHAL 185
                  A+  DG  + WG++  GQLGLGK+      P RV++L G  + +V+ G  H+ 
Sbjct: 203 CGNWHCLALAADGQFFAWGQNSHGQLGLGKEFPSQASPQRVKSLDGIPLAQVAAGGAHSF 262

Query: 186 AQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEG 245
           A +  G +FGWG +  G++G                 S E D+E S   ++         
Sbjct: 263 ALSLSGAVFGWGKNTSGQLG----------------LSDEQDRE-SPCHVK--------- 296

Query: 246 MEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGRE 299
                         L+   +VV I+CG DH+ VL + G + + G+   GQLG +
Sbjct: 297 --------------LLRTQKVVYISCGSDHTAVLTKTGGVFTFGAGSCGQLGHD 336



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 84/272 (30%), Positives = 127/272 (46%), Gaps = 51/272 (18%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSD-VTSVSAGHYHSLAVTNNGAVWA 87
           + S+G GS G LGL T+   V      P  +  L  + +  VS G++H LA+  +G  +A
Sbjct: 164 LFSWGAGSDGQLGLTTTEDSVA----VPRLIKKLNQEMILQVSCGNWHCLALAADGQFFA 219

Query: 88  WGRNNEVQLGRGA-LESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKS 146
           WG+N+  QLG G    S+A+   P+RV+ LD + +    A G  S A+   G+++ WGK+
Sbjct: 220 WGQNSHGQLGLGKEFPSQAS---PQRVKSLDGIPLAQVAAGGAHSFALSLSGAVFGWGKN 276

Query: 147 KRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGN 206
             GQLGL  D  +   P  V+ L  +K+V +S G  H    T+ G +F +G  + G++G+
Sbjct: 277 TSGQLGLS-DEQDRESPCHVKLLRTQKVVYISCGSDHTAVLTKTGGVFTFGAGSCGQLGH 335

Query: 207 LGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEV 266
                     DS  D              E   + V E M                G EV
Sbjct: 336 ----------DSFND--------------EVNPRRVLELM----------------GSEV 355

Query: 267 VDIACGFDHSLVL-GRNGVLLSCGSNVYGQLG 297
             IACG  H+L     +G++ + G  + GQLG
Sbjct: 356 SQIACGRQHTLAFVPSSGLIYAFGCGIKGQLG 387



 Score = 52.0 bits (123), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 41/129 (31%), Positives = 62/129 (48%), Gaps = 21/129 (16%)

Query: 253 PIIWEPF---LVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVD 309
           PII EP     +    V ++ACG +HS+ L  +G + +CG N  GQLG EK+  G  P  
Sbjct: 79  PIILEPRTSGFIHERSVKEVACGGNHSIFLLEDGEVYTCGVNTKGQLGHEKE--GSKPEQ 136

Query: 310 I----NFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPDN---VP 362
           I    + H + ++ G  HSLA+ +            + SWG     QLG    ++   VP
Sbjct: 137 IGALADQHIIHVACGESHSLALSD---------QGRLFSWGAGSDGQLGLTTTEDSVAVP 187

Query: 363 LVVEGLEGE 371
            +++ L  E
Sbjct: 188 RLIKKLNQE 196


>gi|330837469|ref|YP_004412110.1| cell wall/surface repeat protein [Sphaerochaeta coccoides DSM
           17374]
 gi|329749372|gb|AEC02728.1| cell wall/surface repeat protein [Sphaerochaeta coccoides DSM
           17374]
          Length = 874

 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 80/284 (28%), Positives = 130/284 (45%), Gaps = 47/284 (16%)

Query: 33  GDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNN 92
           G+   G LGL + L   G D   P +V  + + V +VSAG YH++ +  +G +WA GRNN
Sbjct: 578 GNNQYGQLGLASIL---GTDKNTPVKVTSMGAAVKAVSAGSYHTMILKKDGTLWATGRNN 634

Query: 93  EVQLGRGALESRATWNDPKRVEGL----DQVNVCAAFASGVVSSAI-GDDGSLWVWGKSK 147
             QLG G  +S+     P +V+      D +    A ++GV  + I   DG+LW  G ++
Sbjct: 635 YGQLGDGTTDSKGM---PVQVKASTTPNDFMTDVEAVSTGVYHTMILKKDGTLWATGYNE 691

Query: 148 RGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNL 207
            GQLG G    +   P +V ++ G  +  VS G  H +   +DG L+  G +  G++G+ 
Sbjct: 692 YGQLGDGTS-NDRSTPVQVLSM-GADVAAVSAGENHTMILKKDGTLWATGQNTYGQLGD- 748

Query: 208 GKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVV 267
                 S  + N     + D +IS                           F+    +V 
Sbjct: 749 ----SDSGTNKNTPVQVKDDTDISG--------------------------FM---TDVA 775

Query: 268 DIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDIN 311
            ++ G+ H+++L  +G L + G N YGQLG    +    PV ++
Sbjct: 776 AVSAGYGHTMILKMDGTLWAIGRNEYGQLGVGNHNDTSTPVQVS 819



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 84/314 (26%), Positives = 138/314 (43%), Gaps = 69/314 (21%)

Query: 34  DGSQGALGLPT-SLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNN 92
           DG+  A G  T S  GVGG+    T V  + +DV +VSAG+YH++ V  NG +WA G N 
Sbjct: 523 DGTLWATGQNTHSQLGVGGNTNINTPVKVM-TDVAAVSAGYYHTMIVKENGTLWATGNNQ 581

Query: 93  EVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLG 152
             QLG  ++      N P +V  +    V A  A    +  +  DG+LW  G++  GQLG
Sbjct: 582 YGQLGLASILGTDK-NTPVKVTSMGAA-VKAVSAGSYHTMILKKDGTLWATGRNNYGQLG 639

Query: 153 LGKDITEAIVPSRVEALAG-----EKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNL 207
            G   ++ + P +V+A          +  VS G  H +   +DG L+  GY+  G++G  
Sbjct: 640 DGTTDSKGM-PVQVKASTTPNDFMTDVEAVSTGVYHTMILKKDGTLWATGYNEYGQLG-- 696

Query: 208 GKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVV 267
                                               +G   ++  P+     L  G +V 
Sbjct: 697 ------------------------------------DGTSNDRSTPV---QVLSMGADVA 717

Query: 268 DIACGFDHSLVLGRNGVLLSCGSNVYGQLG--------------REKQDMGMFPVDINFH 313
            ++ G +H+++L ++G L + G N YGQLG              ++  D+  F  D+   
Sbjct: 718 AVSAGENHTMILKKDGTLWATGQNTYGQLGDSDSGTNKNTPVQVKDDTDISGFMTDV--- 774

Query: 314 PVSISSGLGHSLAI 327
             ++S+G GH++ +
Sbjct: 775 -AAVSAGYGHTMIL 787



 Score = 68.9 bits (167), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 50/165 (30%), Positives = 86/165 (52%), Gaps = 13/165 (7%)

Query: 48  GVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATW 107
           G   D   P +V  + +DV +VSAG  H++ +  +G +WA G+N   QLG    +S    
Sbjct: 698 GTSNDRSTPVQVLSMGADVAAVSAGENHTMILKKDGTLWATGQNTYGQLGDS--DSGTNK 755

Query: 108 NDPKRVEGLDQVNV------CAAFASGVVSSAIGD-DGSLWVWGKSKRGQLGLGKDITEA 160
           N P +V+  D  ++       AA ++G   + I   DG+LW  G+++ GQLG+G    + 
Sbjct: 756 NTPVQVK--DDTDISGFMTDVAAVSAGYGHTMILKMDGTLWAIGRNEYGQLGVGNH-NDT 812

Query: 161 IVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIG 205
             P +V ++ G  +  V  G  + +   +DG L+  G++ DG++G
Sbjct: 813 STPVQVSSM-GSDVAAVFAGEAYTMILKKDGSLWATGFNTDGQLG 856



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 38/100 (38%), Positives = 55/100 (55%), Gaps = 4/100 (4%)

Query: 55  EPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVE 114
           + T + G  +DV +VSAG+ H++ +  +G +WA GRN   QLG G     +T   P +V 
Sbjct: 763 DDTDISGFMTDVAAVSAGYGHTMILKMDGTLWAIGRNEYGQLGVGNHNDTST---PVQVS 819

Query: 115 GLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLG 154
            +   +V A FA    +  +  DGSLW  G +  GQLGLG
Sbjct: 820 SMGS-DVAAVFAGEAYTMILKKDGSLWATGFNTDGQLGLG 858



 Score = 38.1 bits (87), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 23/68 (33%), Positives = 37/68 (54%), Gaps = 2/68 (2%)

Query: 48  GVGG--DAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRA 105
           GVG   D   P +V  + SDV +V AG  +++ +  +G++WA G N + QLG G      
Sbjct: 805 GVGNHNDTSTPVQVSSMGSDVAAVFAGEAYTMILKKDGSLWATGFNTDGQLGLGDSGPET 864

Query: 106 TWNDPKRV 113
             + P++V
Sbjct: 865 HRSSPEQV 872


>gi|139948634|ref|NP_001077132.1| probable E3 ubiquitin-protein ligase HERC3 [Bos taurus]
 gi|124829040|gb|AAI33342.1| HERC3 protein [Bos taurus]
 gi|296486686|tpg|DAA28799.1| TPA: hect domain and RLD 3 [Bos taurus]
          Length = 1050

 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 69/248 (27%), Positives = 116/248 (46%), Gaps = 21/248 (8%)

Query: 66  VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAF 125
           +  V+ G  HSLA+++ G +++WG  ++ QLG   +E       P+ ++ L+Q  +    
Sbjct: 86  IVHVACGESHSLALSDQGQLFSWGAGSDGQLGLMTIEDSVAV--PRLIQKLNQQTILQVS 143

Query: 126 ASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHAL 185
                  A+  DG  + WG++  GQLGLGK+      P RV +L G  + +V  G  H+ 
Sbjct: 144 CGNWHCLALAADGQFFTWGRNSHGQLGLGKEFPSQASPQRVRSLEGIPLAQVVAGGAHSF 203

Query: 186 AQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSE----SDQEISSSTIEKAQKL 241
           A +  G +FGWG +  G++G   +    SP    + R+ +    S  E  ++ + K+  +
Sbjct: 204 ALSLSGAVFGWGMNNAGQLGLSDEKDRESPCHVKLLRTQKVVYISCGEEHTAVLTKSGGV 263

Query: 242 VSEG-----------MEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVL-GRNGVLLSCG 289
            + G           M  E     + E   + G EV  IACG  H+L     +G++ + G
Sbjct: 264 FTFGAGSCGQLGHDSMNDEVNPRRVLE---LMGSEVTQIACGRQHTLAFVPSSGLIYAFG 320

Query: 290 SNVYGQLG 297
               GQLG
Sbjct: 321 CGARGQLG 328



 Score = 83.6 bits (205), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 96/330 (29%), Positives = 145/330 (43%), Gaps = 39/330 (11%)

Query: 39  ALGLPTSLTGVGGDAYEPTRVPGLPSD--VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQL 96
           +LG P     + G   EP +V G  SD  V  V+ G  HS+ +  +G V+  G N + QL
Sbjct: 8   SLGQPGISPNLQGIVAEP-QVCGFISDRSVKEVACGGNHSVFLLEDGEVYTCGVNTKGQL 66

Query: 97  GRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKD 156
           G          N P+++  L   ++         S A+ D G L+ WG    GQLGL   
Sbjct: 67  GH-----EREGNKPEQIGALADQHIVHVACGESHSLALSDQGQLFSWGAGSDGQLGLMTI 121

Query: 157 ITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGK------- 209
                VP  ++ L  + I++VS G  H LA   DG+ F WG ++ G++G LGK       
Sbjct: 122 EDSVAVPRLIQKLNQQTILQVSCGNWHCLALAADGQFFTWGRNSHGQLG-LGKEFPSQAS 180

Query: 210 -----ALESSPLDSNIDRSSESDQEISSSTI-----EKAQKLVSEGMEKEKYMPIIWEPF 259
                +LE  PL   +   + S     S  +       A +L   G+  EK         
Sbjct: 181 PQRVRSLEGIPLAQVVAGGAHSFALSLSGAVFGWGMNNAGQL---GLSDEKDRESPCHVK 237

Query: 260 LVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDI----NFHPV 315
           L+   +VV I+CG +H+ VL ++G + + G+   GQLG +  +  + P  +         
Sbjct: 238 LLRTQKVVYISCGEEHTAVLTKSGGVFTFGAGSCGQLGHDSMNDEVNPRRVLELMGSEVT 297

Query: 316 SISSGLGHSLAICEVRSSNVT----GGARG 341
            I+ G  H+LA   V SS +      GARG
Sbjct: 298 QIACGRQHTLAF--VPSSGLIYAFGCGARG 325


>gi|456874043|gb|EMF89368.1| chromosome condensation regulator RCC1 repeat protein [Leptospira
           santarosai str. ST188]
          Length = 477

 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 86/300 (28%), Positives = 144/300 (48%), Gaps = 24/300 (8%)

Query: 21  MRSASGTAVVSFGDGSQGALGLPTSLTGV---GGDAYEPTRVPGLPSDVTSVSAGHYHSL 77
           M  A   +V ++G+ ++G LG+  +        GD   PT VPG+  D    + G  H+L
Sbjct: 164 MAIAKNGSVYTWGNNAKGQLGIGNNNNPNPKEAGDRLPPTLVPGI-DDAVMGAYGFNHAL 222

Query: 78  AVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDD 137
            + ++G + ++G+NN  QLG G +           V  ++  +V    A    S+A+ ++
Sbjct: 223 ILKSDGTLVSFGQNNVGQLGNGEVNLNVNSFSTNPVAVVNLRDVIQVIAGSEHSAALTEN 282

Query: 138 GSLWVWGKSKRGQLGLGKDITEAIV---PSRVEALAGEKIVKVSFGWGHALAQTEDGKLF 194
           G ++VWGK++ G LG G+      V   P +VE L+G  I +++ G  H LA   DGK++
Sbjct: 283 GEVYVWGKNQYGNLGNGRLSAANTVQSTPVKVEGLSG--IKQIANGRDHILALASDGKIY 340

Query: 195 GWGYSADGRIGNLGKALES-SPLDSNI----DRSSESDQEISSSTIEKAQKLVSEGME-- 247
            WG +A G++G  G    + +P+ + +    + SS       S +I K+ ++   G    
Sbjct: 341 SWGLNASGQLGIGGSGFPNPTPIPTQVLNITNASSVWAGGTQSFSILKSGEVKGWGANGN 400

Query: 248 ------KEKYMPIIWEPF-LVEGVE-VVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGRE 299
                  E     ++EP   V G+E V+   CG  H+  L  NG +   G N  G LGR+
Sbjct: 401 TANLAIGETNTSKVYEPNKAVVGIENVIHFGCGATHNFALLGNGEIYGWGWNFKGSLGRQ 460



 Score = 69.7 bits (169), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 84/315 (26%), Positives = 132/315 (41%), Gaps = 59/315 (18%)

Query: 67  TSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQV-NVCAAF 125
           T +SAG  HS     NG V+  GRNN  QLG G        N+   +  LD + ++ +  
Sbjct: 102 TKLSAGAAHS-GFLKNGNVYTVGRNNFGQLGTGHSTGD---NNNDVIVPLDSIRDIFSIH 157

Query: 126 ASGVVSSAIGDDGSLWVWGKSKRGQLGLG-------KDITEAIVPSRVEALAGEKIVKVS 178
            +   S AI  +GS++ WG + +GQLG+G       K+  + + P+ V  +  +  V  +
Sbjct: 158 FNQNNSMAIAKNGSVYTWGNNAKGQLGIGNNNNPNPKEAGDRLPPTLVPGI--DDAVMGA 215

Query: 179 FGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKA 238
           +G+ HAL    DG L  +G +  G++GN          + N++ +S S   ++       
Sbjct: 216 YGFNHALILKSDGTLVSFGQNNVGQLGN---------GEVNLNVNSFSTNPVA------- 259

Query: 239 QKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGR 298
                                +V   +V+ +  G +HS  L  NG +   G N YG LG 
Sbjct: 260 ---------------------VVNLRDVIQVIAGSEHSAALTENGEVYVWGKNQYGNLGN 298

Query: 299 EKQDMGMFPVDINFHPVSISSGLGHSLAICEVRSSNVTGGARG-IVSWGWNRSSQLGRMG 357
            +         +   PV +  GL     I   R   +   + G I SWG N S QLG  G
Sbjct: 299 GRLSAAN---TVQSTPVKV-EGLSGIKQIANGRDHILALASDGKIYSWGLNASGQLGIGG 354

Query: 358 ---PDNVPLVVEGLE 369
              P+  P+  + L 
Sbjct: 355 SGFPNPTPIPTQVLN 369



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 63/242 (26%), Positives = 103/242 (42%), Gaps = 51/242 (21%)

Query: 65  DVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWN-----DPKRVEGLDQV 119
           D+ S+     +S+A+  NG+V+ WG N + QLG G   +           P  V G+D  
Sbjct: 152 DIFSIHFNQNNSMAIAKNGSVYTWGNNAKGQLGIGNNNNPNPKEAGDRLPPTLVPGIDDA 211

Query: 120 NVCA-AFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKD--ITEAIVPSRVEALAGEKIVK 176
            + A  F   ++   +  DG+L  +G++  GQLG G+      +   + V  +    +++
Sbjct: 212 VMGAYGFNHALI---LKSDGTLVSFGQNNVGQLGNGEVNLNVNSFSTNPVAVVNLRDVIQ 268

Query: 177 VSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIE 236
           V  G  H+ A TE+G+++ WG +  G +GN G+   ++ + S                  
Sbjct: 269 VIAGSEHSAALTENGEVYVWGKNQYGNLGN-GRLSAANTVQS------------------ 309

Query: 237 KAQKLVSEGMEKEKYMPIIWEPFLVEGVE-VVDIACGFDHSLVLGRNGVLLSCGSNVYGQ 295
                                P  VEG+  +  IA G DH L L  +G + S G N  GQ
Sbjct: 310 --------------------TPVKVEGLSGIKQIANGRDHILALASDGKIYSWGLNASGQ 349

Query: 296 LG 297
           LG
Sbjct: 350 LG 351



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 67/266 (25%), Positives = 115/266 (43%), Gaps = 70/266 (26%)

Query: 125 FASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDI----TEAIVPSRVEALAGEKIVKVSFG 180
            ++G   S    +G+++  G++  GQLG G        + IVP  ++++    I  + F 
Sbjct: 104 LSAGAAHSGFLKNGNVYTVGRNNFGQLGTGHSTGDNNNDVIVP--LDSI--RDIFSIHFN 159

Query: 181 WGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQK 240
             +++A  ++G ++ WG +A G++G +G     +P ++  DR                  
Sbjct: 160 QNNSMAIAKNGSVYTWGNNAKGQLG-IGNNNNPNPKEAG-DR------------------ 199

Query: 241 LVSEGMEKEKYMPIIWEPFLVEGVE-VVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGRE 299
                      +P    P LV G++  V  A GF+H+L+L  +G L+S G N  GQLG  
Sbjct: 200 -----------LP----PTLVPGIDDAVMGAYGFNHALILKSDGTLVSFGQNNVGQLGNG 244

Query: 300 KQDMGMFPVDINFHPVSIS---------SGLGHSLAICEVRSSNVTGGARGIVSWGWNRS 350
           + ++ +     N  PV++          +G  HS A+ E            +  WG N+ 
Sbjct: 245 EVNLNVNSFSTN--PVAVVNLRDVIQVIAGSEHSAALTENGE---------VYVWGKNQY 293

Query: 351 SQL--GRMGPDN----VPLVVEGLEG 370
             L  GR+   N     P+ VEGL G
Sbjct: 294 GNLGNGRLSAANTVQSTPVKVEGLSG 319


>gi|297686828|ref|XP_002820940.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC4 isoform 2
           [Pongo abelii]
          Length = 979

 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 77/316 (24%), Positives = 137/316 (43%), Gaps = 49/316 (15%)

Query: 55  EPTRVPGLPS-DVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRV 113
           +P +V  L + ++ +VS G  H+LA+ + G V+AWG +++ QLG   + S      P+ +
Sbjct: 74  KPEQVVALDAQNIVAVSCGEAHTLALNDKGQVYAWGLDSDGQLG--LVGSEECIRVPRNI 131

Query: 114 EGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEK 173
           + L  + +         S A+     ++ WG++K GQLGLG D  +   P  +++L G  
Sbjct: 132 KSLSDIQIVQVACGYCHSLALSKASEVFCWGQNKYGQLGLGTDCKKQTSPQLLKSLLGIP 191

Query: 174 IVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSS 233
            ++V+ G  H+   T  G +FGWG +  G++G          L+                
Sbjct: 192 FMQVAAGGAHSFVLTLSGAIFGWGRNKFGQLG----------LND--------------- 226

Query: 234 TIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVY 293
                        E ++Y+P + +   +   ++V I CG DH+  L + G + + G+  Y
Sbjct: 227 -------------ENDRYVPNLLKS--LRSQKIVYICCGEDHTAALTKEGGVFTFGAGGY 271

Query: 294 GQLGREKQDMGMFPVDINFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQL 353
           GQLG       + P  +      +   +   +A     +S     +  I S+G   + QL
Sbjct: 272 GQLGHNSTSHEINPRKV----FELMGSIVTQIACGRQHTSAFVPSSGRIYSFGLGGNGQL 327

Query: 354 GRMGPDN--VPLVVEG 367
           G     N   P  V+G
Sbjct: 328 GTGSTSNRKSPFTVKG 343



 Score = 77.8 bits (190), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 61/192 (31%), Positives = 99/192 (51%), Gaps = 16/192 (8%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVP-GLPS----DVTSVSAGHYHSLAVTNNG 83
           V ++G  S G LGL      VG +  E  RVP  + S     +  V+ G+ HSLA++   
Sbjct: 105 VYAWGLDSDGQLGL------VGSE--ECIRVPRNIKSLSDIQIVQVACGYCHSLALSKAS 156

Query: 84  AVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVW 143
            V+ WG+N   QLG G    + T   P+ ++ L  +      A G  S  +   G+++ W
Sbjct: 157 EVFCWGQNKYGQLGLGTDCKKQT--SPQLLKSLLGIPFMQVAAGGAHSFVLTLSGAIFGW 214

Query: 144 GKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGR 203
           G++K GQLGL  D  +  VP+ +++L  +KIV +  G  H  A T++G +F +G    G+
Sbjct: 215 GRNKFGQLGLN-DENDRYVPNLLKSLRSQKIVYICCGEDHTAALTKEGGVFTFGAGGYGQ 273

Query: 204 IGNLGKALESSP 215
           +G+   + E +P
Sbjct: 274 LGHNSTSHEINP 285



 Score = 70.5 bits (171), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 67/273 (24%), Positives = 111/273 (40%), Gaps = 57/273 (20%)

Query: 87  AWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKS 146
            WG  +  QLG G ++      +P++ +      V         +  + DDG+++  G +
Sbjct: 3   CWGNASFGQLGLGGIDEEIVL-EPRKSDFFINKKVRDVGCGLRHTVFVLDDGTVYTCGCN 61

Query: 147 KRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGN 206
             GQLG  K   +   P +V AL  + IV VS G  H LA  + G+++ WG  +DG++G 
Sbjct: 62  DLGQLGHEKSRKK---PEQVVALDAQNIVAVSCGEAHTLALNDKGQVYAWGLDSDGQLGL 118

Query: 207 LGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEV 266
           +G   E   +  NI   S+                                      +++
Sbjct: 119 VGSE-ECIRVPRNIKSLSD--------------------------------------IQI 139

Query: 267 VDIACGFDHSLVLGRNGVLLSCGSNVYGQLG-----REKQDMGMFPVDINFHPVSISSGL 321
           V +ACG+ HSL L +   +   G N YGQLG     +++    +    +    + +++G 
Sbjct: 140 VQVACGYCHSLALSKASEVFCWGQNKYGQLGLGTDCKKQTSPQLLKSLLGIPFMQVAAGG 199

Query: 322 GHSLAICEVRSSNVTGGARGIVSWGWNRSSQLG 354
            HS  +          GA  I  WG N+  QLG
Sbjct: 200 AHSFVL-------TLSGA--IFGWGRNKFGQLG 223


>gi|158259079|dbj|BAF85498.1| unnamed protein product [Homo sapiens]
          Length = 1027

 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 77/316 (24%), Positives = 137/316 (43%), Gaps = 49/316 (15%)

Query: 55  EPTRVPGLPS-DVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRV 113
           +P +V  L + ++ +VS G  H+LA+ + G V+AWG +++ QLG   + S      P+ +
Sbjct: 74  KPEQVVALDAQNIVAVSCGEAHTLALNDKGQVYAWGLDSDGQLG--LVGSEECIRVPRNI 131

Query: 114 EGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEK 173
           + L  + +         S A+     ++ WG++K GQLGLG D  +   P  +++L G  
Sbjct: 132 KSLSDIQIVQVACGYYHSLALSKASEVFCWGQNKYGQLGLGTDCKKQTSPQLLKSLLGIP 191

Query: 174 IVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSS 233
            ++V+ G  H+   T  G +FGWG +  G++G          L+                
Sbjct: 192 FMQVAAGGAHSFVLTLSGAIFGWGRNKFGQLG----------LND--------------- 226

Query: 234 TIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVY 293
                        E ++Y+P + +   +   ++V I CG DH+  L + G + + G+  Y
Sbjct: 227 -------------ENDRYVPNLLKS--LRSQKIVYICCGEDHTAALTKEGGVFTFGAGGY 271

Query: 294 GQLGREKQDMGMFPVDINFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQL 353
           GQLG       + P  +      +   +   +A     +S     +  I S+G   + QL
Sbjct: 272 GQLGHNSTSHEINPRKV----FELMGSIVTEIACGRQHTSTFVPSSGRIYSFGLGGNGQL 327

Query: 354 GRMGPDN--VPLVVEG 367
           G     N   P  V+G
Sbjct: 328 GTGSTSNRKSPFTVKG 343



 Score = 81.6 bits (200), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 62/192 (32%), Positives = 100/192 (52%), Gaps = 16/192 (8%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVP-GLPS----DVTSVSAGHYHSLAVTNNG 83
           V ++G  S G LGL      VG +  E  RVP  + S     +  V+ G+YHSLA++   
Sbjct: 105 VYAWGLDSDGQLGL------VGSE--ECIRVPRNIKSLSDIQIVQVACGYYHSLALSKAS 156

Query: 84  AVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVW 143
            V+ WG+N   QLG G    + T   P+ ++ L  +      A G  S  +   G+++ W
Sbjct: 157 EVFCWGQNKYGQLGLGTDCKKQT--SPQLLKSLLGIPFMQVAAGGAHSFVLTLSGAIFGW 214

Query: 144 GKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGR 203
           G++K GQLGL  D  +  VP+ +++L  +KIV +  G  H  A T++G +F +G    G+
Sbjct: 215 GRNKFGQLGLN-DENDRYVPNLLKSLRSQKIVYICCGEDHTAALTKEGGVFTFGAGGYGQ 273

Query: 204 IGNLGKALESSP 215
           +G+   + E +P
Sbjct: 274 LGHNSTSHEINP 285



 Score = 70.5 bits (171), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 67/273 (24%), Positives = 111/273 (40%), Gaps = 57/273 (20%)

Query: 87  AWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKS 146
            WG  +  QLG G ++      +P++ +      V         +  + DDG+++  G +
Sbjct: 3   CWGNASFGQLGLGGIDEEIVL-EPRKSDFFINKRVRDVGCGLRHTVFVLDDGTVYTCGCN 61

Query: 147 KRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGN 206
             GQLG  K   +   P +V AL  + IV VS G  H LA  + G+++ WG  +DG++G 
Sbjct: 62  DLGQLGHEKSRKK---PEQVVALDAQNIVAVSCGEAHTLALNDKGQVYAWGLDSDGQLGL 118

Query: 207 LGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEV 266
           +G   E   +  NI   S+                                      +++
Sbjct: 119 VGSE-ECIRVPRNIKSLSD--------------------------------------IQI 139

Query: 267 VDIACGFDHSLVLGRNGVLLSCGSNVYGQLG-----REKQDMGMFPVDINFHPVSISSGL 321
           V +ACG+ HSL L +   +   G N YGQLG     +++    +    +    + +++G 
Sbjct: 140 VQVACGYYHSLALSKASEVFCWGQNKYGQLGLGTDCKKQTSPQLLKSLLGIPFMQVAAGG 199

Query: 322 GHSLAICEVRSSNVTGGARGIVSWGWNRSSQLG 354
            HS  +          GA  I  WG N+  QLG
Sbjct: 200 AHSFVL-------TLSGA--IFGWGRNKFGQLG 223


>gi|431911482|gb|ELK13688.1| Putative E3 ubiquitin-protein ligase HERC3 [Pteropus alecto]
          Length = 1017

 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 71/260 (27%), Positives = 121/260 (46%), Gaps = 22/260 (8%)

Query: 55  EPTRVPGLP-SDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRV 113
           +P ++  L   ++  V+ G  HSLA+++ G +++WG  ++ QLG    E       P+ +
Sbjct: 121 KPEQIGALADQNIVHVACGESHSLALSDRGQLFSWGAGSDGQLGLMTTEDSVAV--PRLI 178

Query: 114 EGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEK 173
           + L+Q  +           A+  DG  + WGK+  GQLGLGK+      P RV +L G  
Sbjct: 179 QKLNQQTILQVSCGNWHCLALAADGQFFTWGKNSHGQLGLGKEFPSQASPQRVRSLEGIP 238

Query: 174 IVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSE----SDQE 229
           + +V+ G  H+ A +  G +F WG +  G++G   +    SP    + R+ +    S  E
Sbjct: 239 LAQVAAGGAHSFALSLSGAVFAWGMNNAGQLGLSDEEDRESPCHVKLLRTQKVVYISCGE 298

Query: 230 ISSSTIEKAQKLVSEG-----------MEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLV 278
             ++ + K+  + + G           M  E     + E   + G EV  IACG  H+L 
Sbjct: 299 EHTAVLTKSGGVFTFGAGSCGQLGHDSMNDEVNPRRVLE---LMGSEVTQIACGRQHTLA 355

Query: 279 L-GRNGVLLSCGSNVYGQLG 297
               +G++ + G    GQLG
Sbjct: 356 FVPSSGLIYAFGCGARGQLG 375



 Score = 47.4 bits (111), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 37/115 (32%), Positives = 60/115 (52%), Gaps = 20/115 (17%)

Query: 266 VVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDI----NFHPVSISSGL 321
           V ++ACG +HS+ L  +G + +CG N  GQLG E++  G  P  I    + + V ++ G 
Sbjct: 83  VKEVACGGNHSVFLLEDGEVYTCGLNTKGQLGHERE--GNKPEQIGALADQNIVHVACGE 140

Query: 322 GHSLAICEVRSSNVTGGARG-IVSWGWNRSSQLGRMGPDN---VPLVVEGLEGES 372
            HSLA+ +          RG + SWG     QLG M  ++   VP +++ L  ++
Sbjct: 141 SHSLALSD----------RGQLFSWGAGSDGQLGLMTTEDSVAVPRLIQKLNQQT 185


>gi|397520495|ref|XP_003830352.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC4 isoform 3
           [Pan paniscus]
          Length = 979

 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 77/316 (24%), Positives = 137/316 (43%), Gaps = 49/316 (15%)

Query: 55  EPTRVPGLPS-DVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRV 113
           +P +V  L + ++ +VS G  H+LA+ + G V+AWG +++ QLG   + S      P+ +
Sbjct: 74  KPEQVVALDAQNIVAVSCGEAHTLALNDKGQVYAWGLDSDGQLG--LVGSEECIRVPRNI 131

Query: 114 EGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEK 173
           + L  + +         S A+     ++ WG++K GQLGLG D  +   P  +++L G  
Sbjct: 132 KSLSDIQIVQVACGYYHSLALSKASEVFCWGQNKYGQLGLGTDCKKQTSPQLLKSLLGIP 191

Query: 174 IVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSS 233
            ++V+ G  H+   T  G +FGWG +  G++G          L+                
Sbjct: 192 FMQVAAGGAHSFVLTLSGAIFGWGRNKFGQLG----------LND--------------- 226

Query: 234 TIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVY 293
                        E ++Y+P + +   +   ++V I CG DH+  L + G + + G+  Y
Sbjct: 227 -------------ENDRYVPNLLKS--LRSQKIVYICCGEDHTAALTKEGGVFTFGAGGY 271

Query: 294 GQLGREKQDMGMFPVDINFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQL 353
           GQLG       + P  +      +   +   +A     +S     +  I S+G   + QL
Sbjct: 272 GQLGHNSTSHEINPRKV----FELMGSIVTQIACGRQHTSAFVPSSGRIYSFGLGGNGQL 327

Query: 354 GRMGPDN--VPLVVEG 367
           G     N   P  V+G
Sbjct: 328 GTGSTSNRKSPFTVKG 343



 Score = 81.6 bits (200), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 62/192 (32%), Positives = 100/192 (52%), Gaps = 16/192 (8%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVP-GLPS----DVTSVSAGHYHSLAVTNNG 83
           V ++G  S G LGL      VG +  E  RVP  + S     +  V+ G+YHSLA++   
Sbjct: 105 VYAWGLDSDGQLGL------VGSE--ECIRVPRNIKSLSDIQIVQVACGYYHSLALSKAS 156

Query: 84  AVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVW 143
            V+ WG+N   QLG G    + T   P+ ++ L  +      A G  S  +   G+++ W
Sbjct: 157 EVFCWGQNKYGQLGLGTDCKKQT--SPQLLKSLLGIPFMQVAAGGAHSFVLTLSGAIFGW 214

Query: 144 GKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGR 203
           G++K GQLGL  D  +  VP+ +++L  +KIV +  G  H  A T++G +F +G    G+
Sbjct: 215 GRNKFGQLGLN-DENDRYVPNLLKSLRSQKIVYICCGEDHTAALTKEGGVFTFGAGGYGQ 273

Query: 204 IGNLGKALESSP 215
           +G+   + E +P
Sbjct: 274 LGHNSTSHEINP 285



 Score = 70.5 bits (171), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 67/273 (24%), Positives = 111/273 (40%), Gaps = 57/273 (20%)

Query: 87  AWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKS 146
            WG  +  QLG G ++      +P++ +      V         +  + DDG+++  G +
Sbjct: 3   CWGNASFGQLGLGGIDEEIVL-EPRKSDFFINKRVRDVGCGLRHTVFVLDDGTVYTCGCN 61

Query: 147 KRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGN 206
             GQLG  K   +   P +V AL  + IV VS G  H LA  + G+++ WG  +DG++G 
Sbjct: 62  DLGQLGHEKSRKK---PEQVVALDAQNIVAVSCGEAHTLALNDKGQVYAWGLDSDGQLGL 118

Query: 207 LGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEV 266
           +G   E   +  NI   S+                                      +++
Sbjct: 119 VGSE-ECIRVPRNIKSLSD--------------------------------------IQI 139

Query: 267 VDIACGFDHSLVLGRNGVLLSCGSNVYGQLG-----REKQDMGMFPVDINFHPVSISSGL 321
           V +ACG+ HSL L +   +   G N YGQLG     +++    +    +    + +++G 
Sbjct: 140 VQVACGYYHSLALSKASEVFCWGQNKYGQLGLGTDCKKQTSPQLLKSLLGIPFMQVAAGG 199

Query: 322 GHSLAICEVRSSNVTGGARGIVSWGWNRSSQLG 354
            HS  +          GA  I  WG N+  QLG
Sbjct: 200 AHSFVL-------TLSGA--IFGWGRNKFGQLG 223


>gi|344280856|ref|XP_003412198.1| PREDICTED: LOW QUALITY PROTEIN: secretion-regulating guanine
           nucleotide exchange factor-like [Loxodonta africana]
          Length = 454

 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 94/312 (30%), Positives = 139/312 (44%), Gaps = 41/312 (13%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAW 88
           V+S G    G LG+P            P  +  L  +V  V+AG  H+LA T +G V+ W
Sbjct: 124 VLSCGSNLFGQLGVPHGPQ----RCVVPQVIELLREEVVCVAAGLRHALAATASGIVFQW 179

Query: 89  GR---NNEVQLGRG-ALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWG 144
           G    ++  +L  G  L    T  +P RV GL+   V    A    S+++ D G L+VWG
Sbjct: 180 GTGLASSGRRLCPGQTLPLFLTAKEPSRVTGLETSKVRCVLAGSDHSASLTDAGELYVWG 239

Query: 145 KSKRGQLGLGKDITEAIVPSRVE--ALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADG 202
            +K GQL          VP ++E      EK+  V  GW H +AQTE GK+F WG  AD 
Sbjct: 240 SNKHGQLSAQAAFLP--VPQKIEVHCFQNEKVTAVWSGWTHLVAQTETGKVFTWG-RAD- 295

Query: 203 RIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVE 262
             G LG+ LE+           + +++ SS    K +  V   +              + 
Sbjct: 296 -YGQLGRKLEA-------HEGWKQEKQESSLPCLKPRNSVPSSLH------------CLT 335

Query: 263 GVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFHPVS----IS 318
           G    +++CG +H+L +   GV  S G N +G  G   +     PV +     S    + 
Sbjct: 336 G--ATEVSCGSEHNLAV-MGGVCYSWGWNEHGMCGDGTEANVWAPVPVQALRSSVGLHVG 392

Query: 319 SGLGHSLAICEV 330
            G GHSLA+C++
Sbjct: 393 CGAGHSLALCQL 404



 Score = 64.7 bits (156), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 96/385 (24%), Positives = 156/385 (40%), Gaps = 63/385 (16%)

Query: 28  AVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGL--PSDVTSVSAGHYHSLAVTNNGAV 85
           A+ ++G  S G LGL     G   D   P ++     P  V  ++ G  HS  VT+ G +
Sbjct: 18  ALFAWGANSYGQLGL-----GHKEDVLLPQQLNDFCEPGCVRRITGGGGHSTVVTDEGGL 72

Query: 86  WAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGK 145
           +  G N + QLG G  E    +     + G     V   +   ++   + + G +   G 
Sbjct: 73  FVCGLNKDGQLGLGHTEDVLYFTPCTSLLGCPIQQVACGWDFTII---LTESGQVLSCGS 129

Query: 146 SKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGW--GYSADGR 203
           +  GQLG+       +VP  +E L  E++V V+ G  HALA T  G +F W  G ++ GR
Sbjct: 130 NLFGQLGVPHGPQRCVVPQVIELLR-EEVVCVAAGLRHALAATASGIVFQWGTGLASSGR 188

Query: 204 IGNLGKAL----------ESSPLDSNIDRSSESDQEISSSTIEKAQKLV------SEGME 247
               G+ L            + L+++  R   +  + S+S  +  +  V       +   
Sbjct: 189 RLCPGQTLPLFLTAKEPSRVTGLETSKVRCVLAGSDHSASLTDAGELYVWGSNKHGQLSA 248

Query: 248 KEKYMPIIW--EPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGR------- 298
           +  ++P+    E    +  +V  +  G+ H +     G + + G   YGQLGR       
Sbjct: 249 QAAFLPVPQKIEVHCFQNEKVTAVWSGWTHLVAQTETGKVFTWGRADYGQLGRKLEAHEG 308

Query: 299 ---EKQDMGM------FPVDINFHPVS----ISSGLGHSLAICEVRSSNVTGGARGIVSW 345
              EKQ+  +        V  + H ++    +S G  H+LA        V GG     SW
Sbjct: 309 WKQEKQESSLPCLKPRNSVPSSLHCLTGATEVSCGSEHNLA--------VMGGV--CYSW 358

Query: 346 GWNRSSQLGRMGPDNV--PLVVEGL 368
           GWN     G     NV  P+ V+ L
Sbjct: 359 GWNEHGMCGDGTEANVWAPVPVQAL 383



 Score = 61.6 bits (148), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 62/240 (25%), Positives = 101/240 (42%), Gaps = 62/240 (25%)

Query: 139 SLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVK-VSFGWGHALAQTEDGKLFGWG 197
           +L+ WG +  GQLGLG    + ++P ++        V+ ++ G GH+   T++G LF  G
Sbjct: 18  ALFAWGANSYGQLGLGHK-EDVLLPQQLNDFCEPGCVRRITGGGGHSTVVTDEGGLFVCG 76

Query: 198 YSADGRIG--NLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPII 255
            + DG++G  +    L  +P  S +                                   
Sbjct: 77  LNKDGQLGLGHTEDVLYFTPCTSLL----------------------------------- 101

Query: 256 WEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLG-REKQDMGMFPVDINF-- 312
                  G  +  +ACG+D +++L  +G +LSCGSN++GQLG        + P  I    
Sbjct: 102 -------GCPIQQVACGWDFTIILTESGQVLSCGSNLFGQLGVPHGPQRCVVPQVIELLR 154

Query: 313 -HPVSISSGLGHSLAICEVRSSNVTGGARGIV-SWGWNRSSQLGRMGP-DNVPLVVEGLE 369
              V +++GL H+LA            A GIV  WG   +S   R+ P   +PL +   E
Sbjct: 155 EEVVCVAAGLRHALA----------ATASGIVFQWGTGLASSGRRLCPGQTLPLFLTAKE 204


>gi|417781462|ref|ZP_12429211.1| chromosome condensation regulator RCC1 repeat protein [Leptospira
           weilii str. 2006001853]
 gi|410778193|gb|EKR62822.1| chromosome condensation regulator RCC1 repeat protein [Leptospira
           weilii str. 2006001853]
          Length = 506

 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 89/304 (29%), Positives = 150/304 (49%), Gaps = 30/304 (9%)

Query: 21  MRSASGTAVVSFGDGSQGALGLPTSLTG-----VGGDAYEPTRVPGLPSDVTSVSAGHYH 75
           M  A    V ++G+ ++G LG+  + T        G+   PT VPG+  D    + G  H
Sbjct: 191 MAIAKNGRVYTWGNNAKGQLGIGNNNTNPANPRTAGNRQPPTLVPGI-DDAVMGAYGFNH 249

Query: 76  SLAVTNNGAVWAWGRNNEVQLGRGA--LESRATWNDPKRVEGLDQVNVCAAFASGVVSSA 133
           +L + ++G + A+G+NN  QLG GA  L + +   +P  V GL   +V    A    S+A
Sbjct: 250 ALILKSDGTIVAFGQNNVGQLGNGANDLNADSFSMNPVAVVGLR--DVIQVIAGSEHSAA 307

Query: 134 IGDDGSLWVWGKSKRGQLGLGK---DITEAIVPSRVEALAGEKIVKVSFGWGHALAQTED 190
           + ++G ++VWG+++ G LG G+     T   +P +VE L   +I +++ G  H LA   D
Sbjct: 308 LTENGEVYVWGRNQYGNLGNGRLSAANTAQSIPVKVEGLP--EIKQIANGRDHILALASD 365

Query: 191 GKLFGWGYSADGRIGNLGK-ALESSPLDSNI----DRSSESDQEISSSTIEKAQKLVSEG 245
           G+++ WG +A G++G  G  +   +P+ + +    + SS       S +I K+ ++   G
Sbjct: 366 GRIYSWGLNASGQLGIGGNGSPNPTPIPTQVLNILNASSVWAGGTQSFSILKSGEVKGWG 425

Query: 246 MEK--------EKYMPIIWEPF-LVEGVE-VVDIACGFDHSLVLGRNGVLLSCGSNVYGQ 295
                      E     ++EP   V G++ V+   CG  H+ VL  NG +   G N  G 
Sbjct: 426 ANGNTANLAIGETNTQKVYEPNKAVVGIDDVIHFGCGATHNFVLLGNGEIYGWGWNFKGS 485

Query: 296 LGRE 299
           LGR+
Sbjct: 486 LGRQ 489



 Score = 71.2 bits (173), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 86/326 (26%), Positives = 126/326 (38%), Gaps = 79/326 (24%)

Query: 67  TSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFA 126
           T +SAG  HS     NG V+  GRNN  QLG G   S    N+   V+     N+ +   
Sbjct: 129 TKLSAGGAHS-GFLKNGEVYTTGRNNFGQLGTG--NSTGDENNDVIVKLNSIRNISSIHF 185

Query: 127 SGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITE-------------AIVPSRVEALAGEK 173
           +   S AI  +G ++ WG + +GQLG+G + T               +VP   +A+ G  
Sbjct: 186 NQNNSMAIAKNGRVYTWGNNAKGQLGIGNNNTNPANPRTAGNRQPPTLVPGIDDAVMG-- 243

Query: 174 IVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSS 233
               ++G+ HAL    DG +  +G +  G++GN    L +     N              
Sbjct: 244 ----AYGFNHALILKSDGTIVAFGQNNVGQLGNGANDLNADSFSMN-------------- 285

Query: 234 TIEKAQKLVSEGMEKEKYMPIIWEPFLVEGV-EVVDIACGFDHSLVLGRNGVLLSCGSNV 292
                                   P  V G+ +V+ +  G +HS  L  NG +   G N 
Sbjct: 286 ------------------------PVAVVGLRDVIQVIAGSEHSAALTENGEVYVWGRNQ 321

Query: 293 YGQLGREK----QDMGMFPVDINFHP--VSISSGLGHSLAICEVRSSNVTGGARGIVSWG 346
           YG LG  +          PV +   P    I++G  H LA+              I SWG
Sbjct: 322 YGNLGNGRLSAANTAQSIPVKVEGLPEIKQIANGRDHILALASDGR---------IYSWG 372

Query: 347 WNRSSQLGRMG---PDNVPLVVEGLE 369
            N S QLG  G   P+  P+  + L 
Sbjct: 373 LNASGQLGIGGNGSPNPTPIPTQVLN 398



 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 67/244 (27%), Positives = 105/244 (43%), Gaps = 53/244 (21%)

Query: 65  DVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRG-----ALESRATWN--DPKRVEGLD 117
           +++S+     +S+A+  NG V+ WG N + QLG G         R   N   P  V G+D
Sbjct: 179 NISSIHFNQNNSMAIAKNGRVYTWGNNAKGQLGIGNNNTNPANPRTAGNRQPPTLVPGID 238

Query: 118 QVNVCA-AFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEA--IVPSRVEALAGEKI 174
              + A  F   ++   +  DG++  +G++  GQLG G +   A     + V  +    +
Sbjct: 239 DAVMGAYGFNHALI---LKSDGTIVAFGQNNVGQLGNGANDLNADSFSMNPVAVVGLRDV 295

Query: 175 VKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSST 234
           ++V  G  H+ A TE+G+++ WG +  G +GN G+                       S 
Sbjct: 296 IQVIAGSEHSAALTENGEVYVWGRNQYGNLGN-GRL----------------------SA 332

Query: 235 IEKAQKLVSEGMEKEKYMPIIWEPFLVEGV-EVVDIACGFDHSLVLGRNGVLLSCGSNVY 293
              AQ +                P  VEG+ E+  IA G DH L L  +G + S G N  
Sbjct: 333 ANTAQSI----------------PVKVEGLPEIKQIANGRDHILALASDGRIYSWGLNAS 376

Query: 294 GQLG 297
           GQLG
Sbjct: 377 GQLG 380


>gi|405954062|gb|EKC21598.1| Putative E3 ubiquitin-protein ligase HERC4 [Crassostrea gigas]
          Length = 1059

 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 68/242 (28%), Positives = 108/242 (44%), Gaps = 41/242 (16%)

Query: 66  VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAF 125
           V   + G   SL +T  G V++WGRN++ QLGRG L S+     PK ++ L    V    
Sbjct: 95  VIQAAGGSEFSLVITTAGEVFSWGRNDKGQLGRGKL-SKEEERKPKLMKSLAVCTVVQIT 153

Query: 126 ASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHAL 185
                  A+ DDG L+ WG +K GQLGLG   +    P ++  L G  I +++ G  H+ 
Sbjct: 154 CGANHCLALTDDGRLFSWGCNKYGQLGLGSSHSFHDTPQQIVCLRGIPIAQIASGGNHSF 213

Query: 186 AQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEG 245
             T    +FGWG ++ G++G          L+   D+S  +               + + 
Sbjct: 214 ILTWSRAVFGWGKNSFGQLG----------LNDEYDKSHPT---------------LCKS 248

Query: 246 MEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGM 305
           +  +K               V+ I+CG DH++ L + G + S G+  +GQLG       +
Sbjct: 249 LRNQK---------------VMYISCGEDHTVALTKEGGVFSFGAGGFGQLGHNSTQNEI 293

Query: 306 FP 307
            P
Sbjct: 294 LP 295



 Score = 68.9 bits (167), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 51/183 (27%), Positives = 94/183 (51%), Gaps = 15/183 (8%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSD-----VTSVSAGHYHSLAVTNNG 83
           V S+G   +G LG        G  + E  R P L        V  ++ G  H LA+T++G
Sbjct: 114 VFSWGRNDKGQLGR-------GKLSKEEERKPKLMKSLAVCTVVQITCGANHCLALTDDG 166

Query: 84  AVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVW 143
            +++WG N   QLG G+  S +  + P+++  L  + +    + G  S  +    +++ W
Sbjct: 167 RLFSWGCNKYGQLGLGS--SHSFHDTPQQIVCLRGIPIAQIASGGNHSFILTWSRAVFGW 224

Query: 144 GKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGR 203
           GK+  GQLGL  +  ++  P+  ++L  +K++ +S G  H +A T++G +F +G    G+
Sbjct: 225 GKNSFGQLGLNDEYDKS-HPTLCKSLRNQKVMYISCGEDHTVALTKEGGVFSFGAGGFGQ 283

Query: 204 IGN 206
           +G+
Sbjct: 284 LGH 286



 Score = 68.9 bits (167), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 73/278 (26%), Positives = 116/278 (41%), Gaps = 56/278 (20%)

Query: 85  VWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWG 144
           V+ WGR+N+ QL  G  E  +  + PK V  L ++++         +  +  DG L+  G
Sbjct: 4   VFGWGRSNDGQLSIGFSEETSILS-PKEVSRLQELDIKEISCGEKHTLIVTKDGKLYSCG 62

Query: 145 KSKRGQLGLGKDITEAI---VPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSAD 201
            ++ G+LG  K  + A+   V   V +L+  ++++ + G   +L  T  G++F WG +  
Sbjct: 63  SNEYGELGHSKPRSRAVSIDVVELVSSLSSMQVIQAAGGSEFSLVITTAGEVFSWGRNDK 122

Query: 202 GRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLV 261
           G++G                R   S +E      E+  KL+                  +
Sbjct: 123 GQLG----------------RGKLSKEE------ERKPKLMKS----------------L 144

Query: 262 EGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLG----REKQDMGMFPVDINFHPVS- 316
               VV I CG +H L L  +G L S G N YGQLG        D     V +   P++ 
Sbjct: 145 AVCTVVQITCGANHCLALTDDGRLFSWGCNKYGQLGLGSSHSFHDTPQQIVCLRGIPIAQ 204

Query: 317 ISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLG 354
           I+SG  HS          +   +R +  WG N   QLG
Sbjct: 205 IASGGNHSF---------ILTWSRAVFGWGKNSFGQLG 233



 Score = 52.8 bits (125), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 33/99 (33%), Positives = 53/99 (53%), Gaps = 9/99 (9%)

Query: 261 VEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFHPVSISSG 320
           ++ +++ +I+CG  H+L++ ++G L SCGSN YG+LG  K       +D+    V + S 
Sbjct: 34  LQELDIKEISCGEKHTLIVTKDGKLYSCGSNEYGELGHSKPRSRAVSIDV----VELVSS 89

Query: 321 LGHSLAICEV----RSSNVTGGARGIVSWGWNRSSQLGR 355
           L  S+ + +       S V   A  + SWG N   QLGR
Sbjct: 90  LS-SMQVIQAAGGSEFSLVITTAGEVFSWGRNDKGQLGR 127


>gi|395821141|ref|XP_003783906.1| PREDICTED: protein RCC2 [Otolemur garnettii]
          Length = 522

 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 81/293 (27%), Positives = 129/293 (44%), Gaps = 35/293 (11%)

Query: 75  HSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAI 134
           HSL +T  G +W+WGRN + QLG G  +       P+ +EGL    +  A      + A+
Sbjct: 161 HSLLITTEGKLWSWGRNEKGQLGHGDTKRVEA---PRLIEGLSHEVIVLAACGRNHTLAL 217

Query: 135 GDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLF 194
            + GS++ +G++K GQLGLG        P+++    G+ I K++ G   ++     G L+
Sbjct: 218 TETGSVFAFGENKMGQLGLGNQTDAVPSPAQI-MYNGQPITKMACGAEFSMIMDCKGNLY 276

Query: 195 GWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPI 254
            +G    G++G+            N D    +  +      E   + V+  +EK K   I
Sbjct: 277 SFGCPEYGQLGH------------NSDGKFIARAQRIEYDCELVPRRVAIFIEKTKDGQI 324

Query: 255 IWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFHP 314
           +  P +V    V D+ACG +H+LVL     + S G   YG+LG  +Q   M P  +    
Sbjct: 325 LPVPNVV----VRDVACGANHTLVLDSQKRVFSWGFGGYGRLGHAEQKDEMVPRLVKLFD 380

Query: 315 V------SISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPDNV 361
                   I +G   S A+ EV          G+  WG   +S+   M P  V
Sbjct: 381 FPGRGASQIYAGYTCSFAVSEV---------GGLFFWGATNTSRESTMYPKAV 424



 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 56/186 (30%), Positives = 81/186 (43%), Gaps = 31/186 (16%)

Query: 56  PTRVPGLPSDVTSVSA-GHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVE 114
           P  + GL  +V  ++A G  H+LA+T  G+V+A+G N   QLG G      T   P   +
Sbjct: 193 PRLIEGLSHEVIVLAACGRNHTLALTETGSVFAFGENKMGQLGLG----NQTDAVPSPAQ 248

Query: 115 GLDQVNVCAAFASGVVSSAIGD-DGSLWVWGKSKRGQLGL---GKDITEA--------IV 162
            +         A G   S I D  G+L+ +G  + GQLG    GK I  A        +V
Sbjct: 249 IMYNGQPITKMACGAEFSMIMDCKGNLYSFGCPEYGQLGHNSDGKFIARAQRIEYDCELV 308

Query: 163 PSRVEALAGEK-------------IVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGK 209
           P RV A+  EK             +  V+ G  H L      ++F WG+   GR+G+  +
Sbjct: 309 PRRV-AIFIEKTKDGQILPVPNVVVRDVACGANHTLVLDSQKRVFSWGFGGYGRLGHAEQ 367

Query: 210 ALESSP 215
             E  P
Sbjct: 368 KDEMVP 373


>gi|288923322|ref|ZP_06417456.1| regulator of chromosome condensation RCC1 [Frankia sp. EUN1f]
 gi|288345338|gb|EFC79733.1| regulator of chromosome condensation RCC1 [Frankia sp. EUN1f]
          Length = 520

 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 102/360 (28%), Positives = 153/360 (42%), Gaps = 47/360 (13%)

Query: 31  SFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLP--SDVTSVSAGHYHSLAVTNNGAVWAW 88
           +FG    G  G P+         + P  V  L    DV +++ G     A+  +G VWAW
Sbjct: 167 TFGQLGNGTTGTPS---------FSPVPVTDLTGLDDVRAIAGGAGSGFALNGDGTVWAW 217

Query: 89  GRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKR 148
           G NN  QLG G + +    N P +V GL+ +   AA ++G    A+  DG++W WG +  
Sbjct: 218 GLNNVGQLGNGTIINS---NVPVQVAGLEDIRAIAAGSNGN-GYALRSDGTVWAWGDNSA 273

Query: 149 GQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLG 208
           GQLG+ + I  + +P +V  L G + +    G  +AL +  DG+++ WG +    +G LG
Sbjct: 274 GQLGINQAIASSTIPVQVLGLTGIRAIASDGGAAYALRR--DGRVWAWGLN---NVGQLG 328

Query: 209 KALES-SPLDSNIDRSSESDQEISSSTIEKAQKLVSEGM-------------EKEKYMPI 254
               + SPL   I     SD    ++    A  L S+G                     +
Sbjct: 329 VGTTTPSPLP--IQLLGLSDIRAIAARDNSAYALRSDGTVWAWGENGVGQLGNGTNITSL 386

Query: 255 IWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFHP 314
              P L     +  IA G D +  L   G + + GSN  GQLG         P+     P
Sbjct: 387 APAPVL-NLTNIRRIAAGVDSAYALDETGTVWAWGSNTVGQLGNGSNAPSSLPI-----P 440

Query: 315 VSISSGLGHSLAICEVRSSNVTGGARGI-VSWGWNRSSQLGRMGP----DNVPLVVEGLE 369
           V+  +GL  ++AI    +S       G   +WG N   QLG   P       PL + GL+
Sbjct: 441 VTGQTGLVGAVAIAAGANSVYALRWDGTAFAWGNNGLGQLGNGNPAVPSSTTPLPIPGLQ 500



 Score = 70.5 bits (171), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 59/188 (31%), Positives = 98/188 (52%), Gaps = 13/188 (6%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAW 88
           V ++GD S G LG+  ++      +  P +V GL + + ++++    + A+  +G VWAW
Sbjct: 265 VWAWGDNSAGQLGINQAIA----SSTIPVQVLGL-TGIRAIASDGGAAYALRRDGRVWAW 319

Query: 89  GRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKR 148
           G NN  QLG G          P ++ GL  +   AA  +   + A+  DG++W WG++  
Sbjct: 320 GLNNVGQLGVGTTTPSPL---PIQLLGLSDIRAIAARDNS--AYALRSDGTVWAWGENGV 374

Query: 149 GQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLG 208
           GQLG G +IT ++ P+ V  L    I +++ G   A A  E G ++ WG +  G++GN  
Sbjct: 375 GQLGNGTNIT-SLAPAPVLNL--TNIRRIAAGVDSAYALDETGTVWAWGSNTVGQLGNGS 431

Query: 209 KALESSPL 216
            A  S P+
Sbjct: 432 NAPSSLPI 439


>gi|330836304|ref|YP_004410945.1| hypothetical protein [Sphaerochaeta coccoides DSM 17374]
 gi|329748207|gb|AEC01563.1| Listeria/Bacterioides repeat-containing protein [Sphaerochaeta
           coccoides DSM 17374]
          Length = 786

 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 81/276 (29%), Positives = 123/276 (44%), Gaps = 57/276 (20%)

Query: 33  GDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNN 92
           G  + G LGL  S +G   D   P +V  + SDV +VSAG YH++ +  +G +WA GRN 
Sbjct: 542 GQNNDGQLGLGDSSSGT--DRSTPVQVLAMGSDVEAVSAGSYHTMILKKDGTLWATGRNY 599

Query: 93  EVQLGRGALESRATWNDPKRVE-----GLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSK 147
           + QLG G   SR T   P +V+     G    NV A  A G  +  +  DG+LWV G+++
Sbjct: 600 DGQLGDGTTTSRTT---PVQVKASPTFGDFMTNVKAVSAGGFHTMILKKDGTLWVTGRNQ 656

Query: 148 RGQLGLGKD--ITEAIVPSRVEALAG----EKIVKVSFGWGHALAQTEDGKLFGWGYSAD 201
            GQLG G          P +V   +G      +V VS G  + +   +DG L+  G +  
Sbjct: 657 YGQLGDGTSGITNNKSTPVQVRDSSGVGFMTDVVAVSAGLHYTIILKKDGTLWATGRNNF 716

Query: 202 GRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLV 261
           G++G   K    +P+                               K  +M         
Sbjct: 717 GQLGVGNKTDRKTPV-------------------------------KVAFM--------- 736

Query: 262 EGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLG 297
            G +V  ++ G++H+L+  ++G L + G N  GQLG
Sbjct: 737 -GTDVAAVSAGYNHTLIQKKDGSLWATGFNTNGQLG 771



 Score = 88.6 bits (218), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 85/325 (26%), Positives = 147/325 (45%), Gaps = 42/325 (12%)

Query: 33  GDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNN 92
           G+   G LG+     G   D   P +V  + SDV +VSAG  H++ +  +G +WA G N 
Sbjct: 437 GENKAGQLGV-----GDNTDRSTPVQVSSMGSDVAAVSAGEKHTMILKKDGTLWATGENK 491

Query: 93  EVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAI-GDDGSLWVWGKSKRGQL 151
             QLG G  +S    + P +V  +   +  AA ++G   + I   +G+LW  G++  GQL
Sbjct: 492 YGQLGLGDSDSGIDKSTPMQVSSMG--SDVAAVSTGASHTMILKKNGTLWATGQNNDGQL 549

Query: 152 GLGKDITEAIVPSRVEALA-GEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKA 210
           GLG   +     + V+ LA G  +  VS G  H +   +DG L+  G + DG++G+    
Sbjct: 550 GLGDSSSGTDRSTPVQVLAMGSDVEAVSAGSYHTMILKKDGTLWATGRNYDGQLGDGTTT 609

Query: 211 LESSPL---------DSNIDRSSESDQEISSSTIEKAQKL-------------VSEGMEK 248
             ++P+         D   +  + S     +  ++K   L              + G+  
Sbjct: 610 SRTTPVQVKASPTFGDFMTNVKAVSAGGFHTMILKKDGTLWVTGRNQYGQLGDGTSGITN 669

Query: 249 EKYMPIIWEP-----FLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDM 303
            K  P+         F+    +VV ++ G  ++++L ++G L + G N +GQLG   +  
Sbjct: 670 NKSTPVQVRDSSGVGFM---TDVVAVSAGLHYTIILKKDGTLWATGRNNFGQLGVGNKTD 726

Query: 304 GMFPVDINF---HPVSISSGLGHSL 325
              PV + F      ++S+G  H+L
Sbjct: 727 RKTPVKVAFMGTDVAAVSAGYNHTL 751



 Score = 84.3 bits (207), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 72/252 (28%), Positives = 114/252 (45%), Gaps = 45/252 (17%)

Query: 66  VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAF 125
           + SVSAG+YH++ +  +G +WA G N   QLG G    R+T   P +V  +   +V A  
Sbjct: 414 IKSVSAGYYHTMILKTDGTLWATGENKAGQLGVGDNTDRST---PVQVSSMGS-DVAAVS 469

Query: 126 ASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDIT--EAIVPSRVEALAGEKIVKVSFGWGH 183
           A    +  +  DG+LW  G++K GQLGLG   +  +   P +V ++ G  +  VS G  H
Sbjct: 470 AGEKHTMILKKDGTLWATGENKYGQLGLGDSDSGIDKSTPMQVSSM-GSDVAAVSTGASH 528

Query: 184 ALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVS 243
            +   ++G L+  G + DG++G LG +       S  DRS+                   
Sbjct: 529 TMILKKNGTLWATGQNNDGQLG-LGDS------SSGTDRST------------------- 562

Query: 244 EGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDM 303
                    P+     L  G +V  ++ G  H+++L ++G L + G N  GQLG      
Sbjct: 563 ---------PV---QVLAMGSDVEAVSAGSYHTMILKKDGTLWATGRNYDGQLGDGTTTS 610

Query: 304 GMFPVDINFHPV 315
              PV +   P 
Sbjct: 611 RTTPVQVKASPT 622



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 57/174 (32%), Positives = 87/174 (50%), Gaps = 20/174 (11%)

Query: 56  PTRVPGLPS------DVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWND 109
           P +V   P+      +V +VSAG +H++ +  +G +W  GRN   QLG G   S  T N 
Sbjct: 614 PVQVKASPTFGDFMTNVKAVSAGGFHTMILKKDGTLWVTGRNQYGQLGDGT--SGITNNK 671

Query: 110 PKRVEGLDQVNVCAAFASGVVSSAIG--------DDGSLWVWGKSKRGQLGLGKDITEAI 161
              V+  D   V   F + VV+ + G         DG+LW  G++  GQLG+G   T+  
Sbjct: 672 STPVQVRDSSGV--GFMTDVVAVSAGLHYTIILKKDGTLWATGRNNFGQLGVGNK-TDRK 728

Query: 162 VPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSP 215
            P +V A  G  +  VS G+ H L Q +DG L+  G++ +G++G       S+P
Sbjct: 729 TPVKV-AFMGTDVAAVSAGYNHTLIQKKDGSLWATGFNTNGQLGVSDNTNRSTP 781



 Score = 40.8 bits (94), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 26/68 (38%), Positives = 39/68 (57%), Gaps = 5/68 (7%)

Query: 48  GVGG--DAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRA 105
           GVG   D   P +V  + +DV +VSAG+ H+L    +G++WA G N   QLG     +R+
Sbjct: 720 GVGNKTDRKTPVKVAFMGTDVAAVSAGYNHTLIQKKDGSLWATGFNTNGQLGVSDNTNRS 779

Query: 106 TWNDPKRV 113
           T   P++V
Sbjct: 780 T---PEQV 784



 Score = 37.7 bits (86), Expect = 8.5,   Method: Compositional matrix adjust.
 Identities = 28/94 (29%), Positives = 45/94 (47%), Gaps = 7/94 (7%)

Query: 263 GVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFHPVSISSGLG 322
           G +V  ++ G  H+++L ++G L + G N YGQLG    D G+        P+ +SS +G
Sbjct: 462 GSDVAAVSAGEKHTMILKKDGTLWATGENKYGQLGLGDSDSGI----DKSTPMQVSS-MG 516

Query: 323 HSLAICEVRSSNVTGGARGIVSW--GWNRSSQLG 354
             +A     +S+     +    W  G N   QLG
Sbjct: 517 SDVAAVSTGASHTMILKKNGTLWATGQNNDGQLG 550


>gi|270001314|gb|EEZ97761.1| hect domain and RLD 2-like protein [Tribolium castaneum]
          Length = 3894

 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 99/363 (27%), Positives = 156/363 (42%), Gaps = 72/363 (19%)

Query: 19   IFMRSASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDV---TSVSAGHYH 75
            +F+ S  G  + + G+G+ G LGL     G   +   P  +P L   V    +V +G  H
Sbjct: 2100 LFIVSHEG-KLYACGEGTNGRLGL-----GHSNNVPYPRPIPFLSQYVIKKVAVHSGGKH 2153

Query: 76   SLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIG 135
            ++A+T +G V++WG   + +LG G   +R   + PK +E L    +         S+AI 
Sbjct: 2154 AMALTLDGKVFSWGEGEDGKLGHG---NRLNLDKPKMIEALRSKKIRDIACGSSHSAAIT 2210

Query: 136  DDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGW--GHALAQTEDGKL 193
              G L+ WG  + G+LG G +IT+ + P  +++L G +IV+V+ G      LA T++G +
Sbjct: 2211 SSGELYTWGLGEYGRLGHGDNITQ-LKPKLIKSLVGHRIVQVACGSRDAQTLALTDEGWV 2269

Query: 194  FGWGYSADGRIGNLGK-ALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYM 252
            F WG   DG  G LG+   E   +  NI+R                              
Sbjct: 2270 FSWG---DGDFGKLGRGGSEGCNIPHNIER------------------------------ 2296

Query: 253  PIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDI-- 310
                    +  +EVV I CG   SL L + G + + G   Y +LG         P  I  
Sbjct: 2297 --------LNALEVVQIECGAQFSLALTKTGEVWTWGKGDYFRLGHGSDQHVRKPTVIES 2348

Query: 311  --NFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGP--DNVPLVVE 366
              +   + ++ G  H LA+ +      TG    + +WG N   Q G      +  P +V 
Sbjct: 2349 LKDKKVIHVAVGALHCLAVTD------TG---QVYAWGDNDHGQQGNGTTIVNRKPALVH 2399

Query: 367  GLE 369
            GLE
Sbjct: 2400 GLE 2402



 Score = 79.3 bits (194), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 80/312 (25%), Positives = 134/312 (42%), Gaps = 61/312 (19%)

Query: 68   SVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFAS 127
            +V++G  H LA++ +  V++WG  ++ +LG G   +R     PK +E L    +      
Sbjct: 3122 AVNSGGKHCLALSADNDVYSWGEGDDGKLGHG---NRLACETPKLIEALQGYEIIDIACG 3178

Query: 128  GVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHA--L 185
            G  S+AI   G L+ WGK + G+LG G D  + + P  +E L G K++ V+ G G A  L
Sbjct: 3179 GAHSAAITSTGQLYTWGKGRYGRLGHG-DSEDQLKPKLIEELVGYKVIDVACGSGDAQTL 3237

Query: 186  AQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEG 245
              T+D  ++ WG   DG  G LG+                      S   +  +K+ S  
Sbjct: 3238 CITDDDNVWSWG---DGDYGKLGRG--------------------GSDGCKVPKKIES-- 3272

Query: 246  MEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGM 305
                           + G+ V+ + CG   S+ L R+G + + G   Y +LG    +   
Sbjct: 3273 ---------------LAGLGVIKVECGSQFSVALTRSGSVYTWGKGDYHRLGHGTGEHVR 3317

Query: 306  FPVDINF----HPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPDNV 361
             P  +        +SI++G  H +A  +            + +WG N   QLG    + +
Sbjct: 3318 RPKKVAALQGKKIISIATGSLHCVACSD---------EGEVFTWGDNDEGQLGDDTTNAI 3368

Query: 362  --PLVVEGLEGE 371
              P +V  L+G+
Sbjct: 3369 QRPRLVSALQGK 3380



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 53/158 (33%), Positives = 74/158 (46%), Gaps = 12/158 (7%)

Query: 31   SFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPS-DVTSVSAGHYHSLAVTNNGAVWAWG 89
            S+GDG  G LG      G       P ++  L    V  V  G   S+A+T +G+V+ WG
Sbjct: 3247 SWGDGDYGKLG-----RGGSDGCKVPKKIESLAGLGVIKVECGSQFSVALTRSGSVYTWG 3301

Query: 90   RNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRG 149
            + +  +LG G  E       PK+V  L    + +     +   A  D+G ++ WG +  G
Sbjct: 3302 KGDYHRLGHGTGEH---VRRPKKVAALQGKKIISIATGSLHCVACSDEGEVFTWGDNDEG 3358

Query: 150  QLGLGKDITEAIV-PSRVEALAGEKIVKVSFGWGHALA 186
            QLG   D T AI  P  V AL G+KI  V+ G  H LA
Sbjct: 3359 QLG--DDTTNAIQRPRLVSALQGKKITNVACGSAHTLA 3394



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 71/297 (23%), Positives = 114/297 (38%), Gaps = 59/297 (19%)

Query: 82   NGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLW 141
            +G ++ WG N+  QL  G +E  A    P   E L  +             A+  DG ++
Sbjct: 3030 SGTIYGWGHNHRGQL--GGIEG-AKVKIPTPCEALSTLRPVQLVGGEQTLFAVTADGKVY 3086

Query: 142  VWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWG--HALAQTEDGKLFGWGYS 199
              G    G+          +VP+ +E++    I K++   G  H LA + D  ++ WG  
Sbjct: 3087 ATGYGAGGR-LGIGGTDSVLVPTLLESIQHVFIKKIAVNSGGKHCLALSADNDVYSWGEG 3145

Query: 200  ADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPF 259
             DG++G+  +    +P                        KL+                 
Sbjct: 3146 DDGKLGHGNRLACETP------------------------KLIEA--------------- 3166

Query: 260  LVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDIN----FHPV 315
             ++G E++DIACG  HS  +   G L + G   YG+LG    +  + P  I     +  +
Sbjct: 3167 -LQGYEIIDIACGGAHSAAITSTGQLYTWGKGRYGRLGHGDSEDQLKPKLIEELVGYKVI 3225

Query: 316  SISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPD--NVPLVVEGLEG 370
             ++ G G +  +C     NV        SWG     +LGR G D   VP  +E L G
Sbjct: 3226 DVACGSGDAQTLCITDDDNVW-------SWGDGDYGKLGRGGSDGCKVPKKIESLAG 3275



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 77/301 (25%), Positives = 123/301 (40%), Gaps = 55/301 (18%)

Query: 77   LAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNV--CAAFASGVVSSAI 134
             AVT +G V+A G     +LG G  +S      P  +E +  V +   A  + G    A+
Sbjct: 3077 FAVTADGKVYATGYGAGGRLGIGGTDSVLV---PTLLESIQHVFIKKIAVNSGGKHCLAL 3133

Query: 135  GDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLF 194
              D  ++ WG+   G+LG G  +     P  +EAL G +I+ ++ G  H+ A T  G+L+
Sbjct: 3134 SADNDVYSWGEGDDGKLGHGNRLA-CETPKLIEALQGYEIIDIACGGAHSAAITSTGQLY 3192

Query: 195  GWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPI 254
             WG    GR G LG                +S+ ++    IE+                 
Sbjct: 3193 TWG---KGRYGRLGHG--------------DSEDQLKPKLIEE----------------- 3218

Query: 255  IWEPFLVEGVEVVDIACGF--DHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINF 312
                  + G +V+D+ACG     +L +  +  + S G   YG+LGR   D    P  I  
Sbjct: 3219 ------LVGYKVIDVACGSGDAQTLCITDDDNVWSWGDGDYGKLGRGGSDGCKVPKKIES 3272

Query: 313  HPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPDNV--PLVVEGLEG 370
                  +GLG     C  + S     +  + +WG     +LG    ++V  P  V  L+G
Sbjct: 3273 -----LAGLGVIKVECGSQFSVALTRSGSVYTWGKGDYHRLGHGTGEHVRRPKKVAALQG 3327

Query: 371  E 371
            +
Sbjct: 3328 K 3328



 Score = 41.6 bits (96), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 28/77 (36%), Positives = 39/77 (50%), Gaps = 6/77 (7%)

Query: 48   GVGGDAY--EPTRVPGLP-SDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESR 104
            G G D +  +PT +  L    V  V+ G  H LAVT+ G V+AWG N+  Q G G   + 
Sbjct: 2333 GHGSDQHVRKPTVIESLKDKKVIHVAVGALHCLAVTDTGQVYAWGDNDHGQQGNG---TT 2389

Query: 105  ATWNDPKRVEGLDQVNV 121
                 P  V GL+ V++
Sbjct: 2390 IVNRKPALVHGLEDVHI 2406



 Score = 40.4 bits (93), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 37/64 (57%), Gaps = 1/64 (1%)

Query: 135  GDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLF 194
            G  G+++ WG + RGQLG G +  +  +P+  EAL+  + V++  G     A T DGK++
Sbjct: 3028 GGSGTIYGWGHNHRGQLG-GIEGAKVKIPTPCEALSTLRPVQLVGGEQTLFAVTADGKVY 3086

Query: 195  GWGY 198
              GY
Sbjct: 3087 ATGY 3090


>gi|189241718|ref|XP_968558.2| PREDICTED: similar to hect domain and RLD 2 [Tribolium castaneum]
          Length = 4733

 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 99/363 (27%), Positives = 156/363 (42%), Gaps = 72/363 (19%)

Query: 19   IFMRSASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDV---TSVSAGHYH 75
            +F+ S  G  + + G+G+ G LGL     G   +   P  +P L   V    +V +G  H
Sbjct: 2939 LFIVSHEG-KLYACGEGTNGRLGL-----GHSNNVPYPRPIPFLSQYVIKKVAVHSGGKH 2992

Query: 76   SLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIG 135
            ++A+T +G V++WG   + +LG G   +R   + PK +E L    +         S+AI 
Sbjct: 2993 AMALTLDGKVFSWGEGEDGKLGHG---NRLNLDKPKMIEALRSKKIRDIACGSSHSAAIT 3049

Query: 136  DDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGW--GHALAQTEDGKL 193
              G L+ WG  + G+LG G +IT+ + P  +++L G +IV+V+ G      LA T++G +
Sbjct: 3050 SSGELYTWGLGEYGRLGHGDNITQ-LKPKLIKSLVGHRIVQVACGSRDAQTLALTDEGWV 3108

Query: 194  FGWGYSADGRIGNLGK-ALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYM 252
            F WG   DG  G LG+   E   +  NI+R                              
Sbjct: 3109 FSWG---DGDFGKLGRGGSEGCNIPHNIER------------------------------ 3135

Query: 253  PIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDI-- 310
                    +  +EVV I CG   SL L + G + + G   Y +LG         P  I  
Sbjct: 3136 --------LNALEVVQIECGAQFSLALTKTGEVWTWGKGDYFRLGHGSDQHVRKPTVIES 3187

Query: 311  --NFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGR--MGPDNVPLVVE 366
              +   + ++ G  H LA+ +      TG    + +WG N   Q G      +  P +V 
Sbjct: 3188 LKDKKVIHVAVGALHCLAVTD------TG---QVYAWGDNDHGQQGNGTTIVNRKPALVH 3238

Query: 367  GLE 369
            GLE
Sbjct: 3239 GLE 3241



 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 59/196 (30%), Positives = 98/196 (50%), Gaps = 13/196 (6%)

Query: 23  SASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSD-VTSVSAGHY--HSLAV 79
           SA+G A+ ++G G+ G LG      G   D   PT +  L  + +  V+ G +  H+L +
Sbjct: 583 SANG-ALYTWGRGNYGRLG-----HGTAEDCLTPTMISALSDEHIIKVACGSFYAHTLCI 636

Query: 80  TNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGS 139
           T+ G V++WG  +  +LGRG  +       P+ +E L  V +   +     S A+ +DG 
Sbjct: 637 TSQGKVYSWGDGDYGKLGRGGSDGSKL---PRLIEKLQNVKIVQVYCGAQFSVALSEDGH 693

Query: 140 LWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYS 199
           ++ WGK +  +LG   +      P  VE L   K+V VS G  H LA T+ G+++GWG +
Sbjct: 694 VYTWGKGEGWKLGHPTE-ENVRFPEMVEVLRDRKVVGVSLGVSHVLALTDQGEVYGWGKN 752

Query: 200 ADGRIGNLGKALESSP 215
            + +I +  +     P
Sbjct: 753 ENKQICDSSELFVQQP 768



 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 81/305 (26%), Positives = 131/305 (42%), Gaps = 61/305 (20%)

Query: 75  HSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAI 134
           H LA+T +  V++WG  +  +LG G     +T  +P  ++ L   ++      G  S+AI
Sbjct: 526 HYLALTKDYEVYSWGNGDGGRLGHG---DTSTKEEPTLIQALKGKDIIDVECGGTYSAAI 582

Query: 135 GDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFG--WGHALAQTEDGK 192
             +G+L+ WG+   G+LG G    + + P+ + AL+ E I+KV+ G  + H L  T  GK
Sbjct: 583 SANGALYTWGRGNYGRLGHGT-AEDCLTPTMISALSDEHIIKVACGSFYAHTLCITSQGK 641

Query: 193 LFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYM 252
           ++ WG   DG  G LG+                SD       IEK Q             
Sbjct: 642 VYSWG---DGDYGKLGRG--------------GSDGSKLPRLIEKLQ------------- 671

Query: 253 PIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFP----V 308
                      V++V + CG   S+ L  +G + + G     +LG   ++   FP    V
Sbjct: 672 ----------NVKIVQVYCGAQFSVALSEDGHVYTWGKGEGWKLGHPTEENVRFPEMVEV 721

Query: 309 DINFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPDNV--PLVVE 366
             +   V +S G+ H LA+ +       G   G   WG N + Q+       V  P ++E
Sbjct: 722 LRDRKVVGVSLGVSHVLALTD------QGEVYG---WGKNENKQICDSSELFVQQPRLIE 772

Query: 367 GLEGE 371
            L+G+
Sbjct: 773 ALKGQ 777



 Score = 79.3 bits (194), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 80/312 (25%), Positives = 134/312 (42%), Gaps = 61/312 (19%)

Query: 68   SVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFAS 127
            +V++G  H LA++ +  V++WG  ++ +LG G   +R     PK +E L    +      
Sbjct: 3961 AVNSGGKHCLALSADNDVYSWGEGDDGKLGHG---NRLACETPKLIEALQGYEIIDIACG 4017

Query: 128  GVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHA--L 185
            G  S+AI   G L+ WGK + G+LG G D  + + P  +E L G K++ V+ G G A  L
Sbjct: 4018 GAHSAAITSTGQLYTWGKGRYGRLGHG-DSEDQLKPKLIEELVGYKVIDVACGSGDAQTL 4076

Query: 186  AQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEG 245
              T+D  ++ WG   DG  G LG+                      S   +  +K+ S  
Sbjct: 4077 CITDDDNVWSWG---DGDYGKLGRG--------------------GSDGCKVPKKIES-- 4111

Query: 246  MEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGM 305
                           + G+ V+ + CG   S+ L R+G + + G   Y +LG    +   
Sbjct: 4112 ---------------LAGLGVIKVECGSQFSVALTRSGSVYTWGKGDYHRLGHGTGEHVR 4156

Query: 306  FPVDINF----HPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPDNV 361
             P  +        +SI++G  H +A  +            + +WG N   QLG    + +
Sbjct: 4157 RPKKVAALQGKKIISIATGSLHCVACSD---------EGEVFTWGDNDEGQLGDDTTNAI 4207

Query: 362  --PLVVEGLEGE 371
              P +V  L+G+
Sbjct: 4208 QRPRLVSALQGK 4219



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 53/158 (33%), Positives = 74/158 (46%), Gaps = 12/158 (7%)

Query: 31   SFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPS-DVTSVSAGHYHSLAVTNNGAVWAWG 89
            S+GDG  G LG      G       P ++  L    V  V  G   S+A+T +G+V+ WG
Sbjct: 4086 SWGDGDYGKLG-----RGGSDGCKVPKKIESLAGLGVIKVECGSQFSVALTRSGSVYTWG 4140

Query: 90   RNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRG 149
            + +  +LG G  E       PK+V  L    + +     +   A  D+G ++ WG +  G
Sbjct: 4141 KGDYHRLGHGTGEHV---RRPKKVAALQGKKIISIATGSLHCVACSDEGEVFTWGDNDEG 4197

Query: 150  QLGLGKDITEAIV-PSRVEALAGEKIVKVSFGWGHALA 186
            QLG   D T AI  P  V AL G+KI  V+ G  H LA
Sbjct: 4198 QLG--DDTTNAIQRPRLVSALQGKKITNVACGSAHTLA 4233



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 71/297 (23%), Positives = 114/297 (38%), Gaps = 59/297 (19%)

Query: 82   NGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLW 141
            +G ++ WG N+  QL  G +E  A    P   E L  +             A+  DG ++
Sbjct: 3869 SGTIYGWGHNHRGQL--GGIEG-AKVKIPTPCEALSTLRPVQLVGGEQTLFAVTADGKVY 3925

Query: 142  VWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWG--HALAQTEDGKLFGWGYS 199
              G    G+          +VP+ +E++    I K++   G  H LA + D  ++ WG  
Sbjct: 3926 ATGYGAGGR-LGIGGTDSVLVPTLLESIQHVFIKKIAVNSGGKHCLALSADNDVYSWGEG 3984

Query: 200  ADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPF 259
             DG++G+  +    +P                        KL+                 
Sbjct: 3985 DDGKLGHGNRLACETP------------------------KLIEA--------------- 4005

Query: 260  LVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDIN----FHPV 315
             ++G E++DIACG  HS  +   G L + G   YG+LG    +  + P  I     +  +
Sbjct: 4006 -LQGYEIIDIACGGAHSAAITSTGQLYTWGKGRYGRLGHGDSEDQLKPKLIEELVGYKVI 4064

Query: 316  SISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPD--NVPLVVEGLEG 370
             ++ G G +  +C     NV        SWG     +LGR G D   VP  +E L G
Sbjct: 4065 DVACGSGDAQTLCITDDDNVW-------SWGDGDYGKLGRGGSDGCKVPKKIESLAG 4114



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 77/301 (25%), Positives = 123/301 (40%), Gaps = 55/301 (18%)

Query: 77   LAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNV--CAAFASGVVSSAI 134
             AVT +G V+A G     +LG G  +S      P  +E +  V +   A  + G    A+
Sbjct: 3916 FAVTADGKVYATGYGAGGRLGIGGTDSVLV---PTLLESIQHVFIKKIAVNSGGKHCLAL 3972

Query: 135  GDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLF 194
              D  ++ WG+   G+LG G  +     P  +EAL G +I+ ++ G  H+ A T  G+L+
Sbjct: 3973 SADNDVYSWGEGDDGKLGHGNRLA-CETPKLIEALQGYEIIDIACGGAHSAAITSTGQLY 4031

Query: 195  GWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPI 254
             WG    GR G LG                +S+ ++    IE+                 
Sbjct: 4032 TWG---KGRYGRLGHG--------------DSEDQLKPKLIEE----------------- 4057

Query: 255  IWEPFLVEGVEVVDIACGF--DHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINF 312
                  + G +V+D+ACG     +L +  +  + S G   YG+LGR   D    P  I  
Sbjct: 4058 ------LVGYKVIDVACGSGDAQTLCITDDDNVWSWGDGDYGKLGRGGSDGCKVPKKIES 4111

Query: 313  HPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPDNV--PLVVEGLEG 370
                  +GLG     C  + S     +  + +WG     +LG    ++V  P  V  L+G
Sbjct: 4112 -----LAGLGVIKVECGSQFSVALTRSGSVYTWGKGDYHRLGHGTGEHVRRPKKVAALQG 4166

Query: 371  E 371
            +
Sbjct: 4167 K 4167



 Score = 41.6 bits (96), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 28/77 (36%), Positives = 39/77 (50%), Gaps = 6/77 (7%)

Query: 48   GVGGDAY--EPTRVPGLP-SDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESR 104
            G G D +  +PT +  L    V  V+ G  H LAVT+ G V+AWG N+  Q G G   + 
Sbjct: 3172 GHGSDQHVRKPTVIESLKDKKVIHVAVGALHCLAVTDTGQVYAWGDNDHGQQGNG---TT 3228

Query: 105  ATWNDPKRVEGLDQVNV 121
                 P  V GL+ V++
Sbjct: 3229 IVNRKPALVHGLEDVHI 3245



 Score = 40.0 bits (92), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 37/64 (57%), Gaps = 1/64 (1%)

Query: 135  GDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLF 194
            G  G+++ WG + RGQLG G +  +  +P+  EAL+  + V++  G     A T DGK++
Sbjct: 3867 GGSGTIYGWGHNHRGQLG-GIEGAKVKIPTPCEALSTLRPVQLVGGEQTLFAVTADGKVY 3925

Query: 195  GWGY 198
              GY
Sbjct: 3926 ATGY 3929


>gi|148700104|gb|EDL32051.1| hect domain and RLD 4, isoform CRA_a [Mus musculus]
          Length = 546

 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 76/316 (24%), Positives = 136/316 (43%), Gaps = 49/316 (15%)

Query: 55  EPTRVPGLPS-DVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRV 113
           +P +V  L + ++ +V+ G  H+LA+ + G V+AWG +++ QLG     S      P+ +
Sbjct: 74  KPEQVVALDAQNIVAVACGEAHTLALNDKGQVYAWGLDSDGQLGLQG--SEECIRVPRNI 131

Query: 114 EGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEK 173
           + L  + +         S A+     ++ WG++K GQLGLG D  +   P  +++L G  
Sbjct: 132 KSLSDIQIVQVACGYYHSLALSKASEVFCWGQNKYGQLGLGIDCQKQTSPQLIKSLLGIP 191

Query: 174 IVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSS 233
            ++V+ G  H+   T  G +FGWG +  G++G          L+                
Sbjct: 192 FMQVAAGGAHSFVLTLSGAIFGWGRNKFGQLG----------LND--------------- 226

Query: 234 TIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVY 293
                        E ++Y+P + +   +   ++V I CG DH+  L + G + + G+  Y
Sbjct: 227 -------------ENDRYVPNLLKS--LRSQKIVYICCGEDHTAALTKEGGVFTFGAGGY 271

Query: 294 GQLGREKQDMGMFPVDINFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQL 353
           GQLG       + P  +      +   +   +A     +S     +  I S+G   + QL
Sbjct: 272 GQLGHNSTSHEINPRKV----FELMGSIVTQVACGRQHTSAFVPSSGRIYSFGLGGNGQL 327

Query: 354 GRMGPDN--VPLVVEG 367
           G     N   P  V+G
Sbjct: 328 GTGSTSNRKSPFTVKG 343



 Score = 80.9 bits (198), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 58/188 (30%), Positives = 96/188 (51%), Gaps = 8/188 (4%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPS-DVTSVSAGHYHSLAVTNNGAVWA 87
           V ++G  S G LGL  S   +      P  +  L    +  V+ G+YHSLA++    V+ 
Sbjct: 105 VYAWGLDSDGQLGLQGSEECI----RVPRNIKSLSDIQIVQVACGYYHSLALSKASEVFC 160

Query: 88  WGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSK 147
           WG+N   QLG G    + T   P+ ++ L  +      A G  S  +   G+++ WG++K
Sbjct: 161 WGQNKYGQLGLGIDCQKQT--SPQLIKSLLGIPFMQVAAGGAHSFVLTLSGAIFGWGRNK 218

Query: 148 RGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNL 207
            GQLGL  D  +  VP+ +++L  +KIV +  G  H  A T++G +F +G    G++G+ 
Sbjct: 219 FGQLGL-NDENDRYVPNLLKSLRSQKIVYICCGEDHTAALTKEGGVFTFGAGGYGQLGHN 277

Query: 208 GKALESSP 215
             + E +P
Sbjct: 278 STSHEINP 285



 Score = 69.3 bits (168), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 70/294 (23%), Positives = 120/294 (40%), Gaps = 59/294 (20%)

Query: 85  VWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWG 144
           +  WG  +  QLG G ++      +P+R +      V         +  + DDG+++  G
Sbjct: 1   MLCWGNASYGQLGLGGIDEEIVL-EPRRSDFFVNKKVRDVGCGLRHTVFVLDDGTVYTCG 59

Query: 145 KSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRI 204
            +  GQLG  K   +   P +V AL  + IV V+ G  H LA  + G+++ WG  +DG++
Sbjct: 60  CNDLGQLGHEKSRKK---PEQVVALDAQNIVAVACGEAHTLALNDKGQVYAWGLDSDGQL 116

Query: 205 GNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGV 264
           G  G   E   +  NI   S+                                      +
Sbjct: 117 GLQGSE-ECIRVPRNIKSLSD--------------------------------------I 137

Query: 265 EVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLG-----REKQDMGMFPVDINFHPVSISS 319
           ++V +ACG+ HSL L +   +   G N YGQLG     +++    +    +    + +++
Sbjct: 138 QIVQVACGYYHSLALSKASEVFCWGQNKYGQLGLGIDCQKQTSPQLIKSLLGIPFMQVAA 197

Query: 320 GLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPDN--VPLVVEGLEGE 371
           G  HS  +          GA  I  WG N+  QLG    ++  VP +++ L  +
Sbjct: 198 GGAHSFVL-------TLSGA--IFGWGRNKFGQLGLNDENDRYVPNLLKSLRSQ 242


>gi|426364914|ref|XP_004049536.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC4 isoform 3
           [Gorilla gorilla gorilla]
          Length = 979

 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 77/316 (24%), Positives = 137/316 (43%), Gaps = 49/316 (15%)

Query: 55  EPTRVPGLPS-DVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRV 113
           +P +V  L + ++ +VS G  H+LA+ + G V+AWG +++ QLG   + S      P+ +
Sbjct: 74  KPEQVVALDAQNIVAVSCGEAHTLALNDKGQVYAWGLDSDGQLG--LVGSEECIRVPRNI 131

Query: 114 EGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEK 173
           + L  + +         S A+     ++ WG++K GQLGLG D  +   P  +++L G  
Sbjct: 132 KSLSDIQIVQVACGYYHSLALSKASEVFCWGQNKYGQLGLGTDCKKQTSPQLLKSLLGIP 191

Query: 174 IVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSS 233
            ++V+ G  H+   T  G +FGWG +  G++G          L+                
Sbjct: 192 FMQVAAGGAHSFVLTLSGAIFGWGRNKFGQLG----------LND--------------- 226

Query: 234 TIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVY 293
                        E ++Y+P + +   +   ++V I CG DH+  L + G + + G+  Y
Sbjct: 227 -------------ENDRYVPNLLKS--LRSQKIVYICCGEDHTAALTKEGGVFTFGAGGY 271

Query: 294 GQLGREKQDMGMFPVDINFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQL 353
           GQLG       + P  +      +   +   +A     +S     +  I S+G   + QL
Sbjct: 272 GQLGHNSTSHEINPRKV----FELMGSIVTEIACGRQHTSAFVPSSGRIYSFGLGGNGQL 327

Query: 354 GRMGPDN--VPLVVEG 367
           G     N   P  V+G
Sbjct: 328 GTGSTSNRKSPFTVKG 343



 Score = 81.6 bits (200), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 62/192 (32%), Positives = 100/192 (52%), Gaps = 16/192 (8%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVP-GLPS----DVTSVSAGHYHSLAVTNNG 83
           V ++G  S G LGL      VG +  E  RVP  + S     +  V+ G+YHSLA++   
Sbjct: 105 VYAWGLDSDGQLGL------VGSE--ECIRVPRNIKSLSDIQIVQVACGYYHSLALSKAS 156

Query: 84  AVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVW 143
            V+ WG+N   QLG G    + T   P+ ++ L  +      A G  S  +   G+++ W
Sbjct: 157 EVFCWGQNKYGQLGLGTDCKKQT--SPQLLKSLLGIPFMQVAAGGAHSFVLTLSGAIFGW 214

Query: 144 GKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGR 203
           G++K GQLGL  D  +  VP+ +++L  +KIV +  G  H  A T++G +F +G    G+
Sbjct: 215 GRNKFGQLGLN-DENDRYVPNLLKSLRSQKIVYICCGEDHTAALTKEGGVFTFGAGGYGQ 273

Query: 204 IGNLGKALESSP 215
           +G+   + E +P
Sbjct: 274 LGHNSTSHEINP 285



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 66/273 (24%), Positives = 111/273 (40%), Gaps = 57/273 (20%)

Query: 87  AWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKS 146
            WG  +  QLG G ++      +P++ +      +         +  + DDG+++  G +
Sbjct: 3   CWGNASFGQLGLGGIDEEIVL-EPRKSDFFINKRIRDVGCGLRHTVFVLDDGTVYTCGCN 61

Query: 147 KRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGN 206
             GQLG  K   +   P +V AL  + IV VS G  H LA  + G+++ WG  +DG++G 
Sbjct: 62  DLGQLGHEKSRKK---PEQVVALDAQNIVAVSCGEAHTLALNDKGQVYAWGLDSDGQLGL 118

Query: 207 LGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEV 266
           +G   E   +  NI   S+                                      +++
Sbjct: 119 VGSE-ECIRVPRNIKSLSD--------------------------------------IQI 139

Query: 267 VDIACGFDHSLVLGRNGVLLSCGSNVYGQLG-----REKQDMGMFPVDINFHPVSISSGL 321
           V +ACG+ HSL L +   +   G N YGQLG     +++    +    +    + +++G 
Sbjct: 140 VQVACGYYHSLALSKASEVFCWGQNKYGQLGLGTDCKKQTSPQLLKSLLGIPFMQVAAGG 199

Query: 322 GHSLAICEVRSSNVTGGARGIVSWGWNRSSQLG 354
            HS  +          GA  I  WG N+  QLG
Sbjct: 200 AHSFVL-------TLSGA--IFGWGRNKFGQLG 223


>gi|55832181|gb|AAV66579.1| HECT and RCC1 containing protein 4 isoform 3 [Homo sapiens]
          Length = 979

 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 77/316 (24%), Positives = 137/316 (43%), Gaps = 49/316 (15%)

Query: 55  EPTRVPGLPS-DVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRV 113
           +P +V  L + ++ +VS G  H+LA+ + G V+AWG +++ QLG   + S      P+ +
Sbjct: 74  KPEQVVALDAQNIVAVSCGEAHTLALNDKGQVYAWGLDSDGQLG--LVGSEECIRVPRNI 131

Query: 114 EGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEK 173
           + L  + +         S A+     ++ WG++K GQLGLG D  +   P  +++L G  
Sbjct: 132 KSLSDIQIVQVACGYYHSLALSKASEVFCWGQNKYGQLGLGTDCKKQTSPQLLKSLLGIP 191

Query: 174 IVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSS 233
            ++V+ G  H+   T  G +FGWG +  G++G          L+                
Sbjct: 192 FMQVAAGGAHSFVLTLSGAIFGWGRNKFGQLG----------LND--------------- 226

Query: 234 TIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVY 293
                        E ++Y+P + +   +   ++V I CG DH+  L + G + + G+  Y
Sbjct: 227 -------------ENDRYVPNLLKS--LRSQKIVYICCGEDHTAALTKEGGVFTFGAGGY 271

Query: 294 GQLGREKQDMGMFPVDINFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQL 353
           GQLG       + P  +      +   +   +A     +S     +  I S+G   + QL
Sbjct: 272 GQLGHNSTSHEINPRKV----FELMGSIVTEIACGRQHTSAFVPSSGRIYSFGLGGNGQL 327

Query: 354 GRMGPDN--VPLVVEG 367
           G     N   P  V+G
Sbjct: 328 GTGSTSNRKSPFTVKG 343



 Score = 81.6 bits (200), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 62/192 (32%), Positives = 100/192 (52%), Gaps = 16/192 (8%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVP-GLPS----DVTSVSAGHYHSLAVTNNG 83
           V ++G  S G LGL      VG +  E  RVP  + S     +  V+ G+YHSLA++   
Sbjct: 105 VYAWGLDSDGQLGL------VGSE--ECIRVPRNIKSLSDIQIVQVACGYYHSLALSKAS 156

Query: 84  AVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVW 143
            V+ WG+N   QLG G    + T   P+ ++ L  +      A G  S  +   G+++ W
Sbjct: 157 EVFCWGQNKYGQLGLGTDCKKQT--SPQLLKSLLGIPFMQVAAGGAHSFVLTLSGAIFGW 214

Query: 144 GKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGR 203
           G++K GQLGL  D  +  VP+ +++L  +KIV +  G  H  A T++G +F +G    G+
Sbjct: 215 GRNKFGQLGLN-DENDRYVPNLLKSLRSQKIVYICCGEDHTAALTKEGGVFTFGAGGYGQ 273

Query: 204 IGNLGKALESSP 215
           +G+   + E +P
Sbjct: 274 LGHNSTSHEINP 285



 Score = 70.5 bits (171), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 67/273 (24%), Positives = 111/273 (40%), Gaps = 57/273 (20%)

Query: 87  AWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKS 146
            WG  +  QLG G ++      +P++ +      V         +  + DDG+++  G +
Sbjct: 3   CWGNASFGQLGLGGIDEEIVL-EPRKSDFFINKRVRDVGCGLRHTVFVLDDGTVYTCGCN 61

Query: 147 KRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGN 206
             GQLG  K   +   P +V AL  + IV VS G  H LA  + G+++ WG  +DG++G 
Sbjct: 62  DLGQLGHEKSRKK---PEQVVALDAQNIVAVSCGEAHTLALNDKGQVYAWGLDSDGQLGL 118

Query: 207 LGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEV 266
           +G   E   +  NI   S+                                      +++
Sbjct: 119 VGSE-ECIRVPRNIKSLSD--------------------------------------IQI 139

Query: 267 VDIACGFDHSLVLGRNGVLLSCGSNVYGQLG-----REKQDMGMFPVDINFHPVSISSGL 321
           V +ACG+ HSL L +   +   G N YGQLG     +++    +    +    + +++G 
Sbjct: 140 VQVACGYYHSLALSKASEVFCWGQNKYGQLGLGTDCKKQTSPQLLKSLLGIPFMQVAAGG 199

Query: 322 GHSLAICEVRSSNVTGGARGIVSWGWNRSSQLG 354
            HS  +          GA  I  WG N+  QLG
Sbjct: 200 AHSFVL-------TLSGA--IFGWGRNKFGQLG 223


>gi|114630760|ref|XP_001167652.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC4 isoform 4
           [Pan troglodytes]
          Length = 979

 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 77/316 (24%), Positives = 137/316 (43%), Gaps = 49/316 (15%)

Query: 55  EPTRVPGLPS-DVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRV 113
           +P +V  L + ++ +VS G  H+LA+ + G V+AWG +++ QLG   + S      P+ +
Sbjct: 74  KPEQVVALDAQNIVAVSCGEAHTLALNDKGQVYAWGLDSDGQLG--LVGSEECIRVPRNI 131

Query: 114 EGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEK 173
           + L  + +         S A+     ++ WG++K GQLGLG D  +   P  +++L G  
Sbjct: 132 KSLSDIQIVQVACGYYHSLALSKASEVFCWGQNKYGQLGLGTDCKKQTSPQLLKSLLGIP 191

Query: 174 IVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSS 233
            ++V+ G  H+   T  G +FGWG +  G++G          L+                
Sbjct: 192 FMQVAAGGAHSFVLTLSGAIFGWGRNKFGQLG----------LND--------------- 226

Query: 234 TIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVY 293
                        E ++Y+P + +   +   ++V I CG DH+  L + G + + G+  Y
Sbjct: 227 -------------ENDRYVPNLLKS--LRSQKIVYICCGEDHTAALTKEGGVFTFGAGGY 271

Query: 294 GQLGREKQDMGMFPVDINFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQL 353
           GQLG       + P  +      +   +   +A     +S     +  I S+G   + QL
Sbjct: 272 GQLGHNSTSHEINPRKV----FELMGSIVTQIACGRQHTSAFVPSSGRIYSFGLGGNGQL 327

Query: 354 GRMGPDN--VPLVVEG 367
           G     N   P  V+G
Sbjct: 328 GTGSTSNRKSPFTVKG 343



 Score = 81.6 bits (200), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 62/192 (32%), Positives = 100/192 (52%), Gaps = 16/192 (8%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVP-GLPS----DVTSVSAGHYHSLAVTNNG 83
           V ++G  S G LGL      VG +  E  RVP  + S     +  V+ G+YHSLA++   
Sbjct: 105 VYAWGLDSDGQLGL------VGSE--ECIRVPRNIKSLSDIQIVQVACGYYHSLALSKAS 156

Query: 84  AVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVW 143
            V+ WG+N   QLG G    + T   P+ ++ L  +      A G  S  +   G+++ W
Sbjct: 157 EVFCWGQNKYGQLGLGTDCKKQT--SPQLLKSLLGIPFMQVAAGGAHSFVLTLSGAIFGW 214

Query: 144 GKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGR 203
           G++K GQLGL  D  +  VP+ +++L  +KIV +  G  H  A T++G +F +G    G+
Sbjct: 215 GRNKFGQLGLN-DENDRYVPNLLKSLRSQKIVYICCGEDHTAALTKEGGVFTFGAGGYGQ 273

Query: 204 IGNLGKALESSP 215
           +G+   + E +P
Sbjct: 274 LGHNSTSHEINP 285



 Score = 70.5 bits (171), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 67/273 (24%), Positives = 111/273 (40%), Gaps = 57/273 (20%)

Query: 87  AWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKS 146
            WG  +  QLG G ++      +P++ +      V         +  + DDG+++  G +
Sbjct: 3   CWGNASFGQLGLGGIDEEIVL-EPRKSDFFINKRVRDVGCGLRHTVFVLDDGTVYTCGCN 61

Query: 147 KRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGN 206
             GQLG  K   +   P +V AL  + IV VS G  H LA  + G+++ WG  +DG++G 
Sbjct: 62  DLGQLGHEKSRKK---PEQVVALDAQNIVAVSCGEAHTLALNDKGQVYAWGLDSDGQLGL 118

Query: 207 LGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEV 266
           +G   E   +  NI   S+                                      +++
Sbjct: 119 VGSE-ECIRVPRNIKSLSD--------------------------------------IQI 139

Query: 267 VDIACGFDHSLVLGRNGVLLSCGSNVYGQLG-----REKQDMGMFPVDINFHPVSISSGL 321
           V +ACG+ HSL L +   +   G N YGQLG     +++    +    +    + +++G 
Sbjct: 140 VQVACGYYHSLALSKASEVFCWGQNKYGQLGLGTDCKKQTSPQLLKSLLGIPFMQVAAGG 199

Query: 322 GHSLAICEVRSSNVTGGARGIVSWGWNRSSQLG 354
            HS  +          GA  I  WG N+  QLG
Sbjct: 200 AHSFVL-------TLSGA--IFGWGRNKFGQLG 223


>gi|426258035|ref|XP_004022625.1| PREDICTED: X-linked retinitis pigmentosa GTPase regulator [Ovis
           aries]
          Length = 1137

 Score = 92.8 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 81/303 (26%), Positives = 149/303 (49%), Gaps = 34/303 (11%)

Query: 9   HNHVNVLTSRIFMRSASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGL-PSDVT 67
           H  +    +++FM          FG  + G LGL +  T       +PT +  L P  V 
Sbjct: 72  HTAITTGNNKLFM----------FGSNNWGQLGLGSKAT-----VNKPTCIKALKPEKVK 116

Query: 68  SVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFAS 127
            V+ G  H+L +T  G V+A G NNE QLG G  + R+ ++         ++   +A ++
Sbjct: 117 FVACGRNHTLVLTGGGKVYATGGNNEGQLGLGDTDERSAFHLISFFTSQHKIKQLSAGSN 176

Query: 128 GVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQ 187
              S+A+ +DG L++WG +  GQ+GL ++IT   VP +V    G+ I  +S G+ H+   
Sbjct: 177 --TSAALTEDGELFMWGDNSEGQIGL-QNITNMCVPHQVT--VGKPISWISCGYYHSAFV 231

Query: 188 TEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEIS---SSTIEKAQKLV-S 243
           T +G+L+ +G    G++G   K L +  +   +   SE   +++     T+   +K V +
Sbjct: 232 TTEGELYTFGEPESGKLGLPPKLLVNHKVPQLVPGISEKVIQVACGGGHTVVLTEKAVYT 291

Query: 244 EGMEKEKYMPI------IWEPFLVEGV---EVVDIACGFDHSLVLGRNGVLLSCGSNVYG 294
            G+ +   + +        EP ++E V   ++  + CG +H+ ++  +G+L + G   +G
Sbjct: 292 FGLGQFGQLGLGTFTFETSEPKVIESVKDKKISHVCCGENHTALITESGLLYTFGDGRHG 351

Query: 295 QLG 297
           +LG
Sbjct: 352 KLG 354



 Score = 66.2 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 69/242 (28%), Positives = 110/242 (45%), Gaps = 17/242 (7%)

Query: 68  SVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFAS 127
           S+S G  H+   T N  ++ +G NN  QLG G   S+AT N P  ++ L    V      
Sbjct: 65  SLSCGDEHTAITTGNNKLFMFGSNNWGQLGLG---SKATVNKPTCIKALKPEKVKFVACG 121

Query: 128 GVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGE-KIVKVSFGWGHALA 186
              +  +   G ++  G +  GQLGLG D  E      +     + KI ++S G   + A
Sbjct: 122 RNHTLVLTGGGKVYATGGNNEGQLGLG-DTDERSAFHLISFFTSQHKIKQLSAGSNTSAA 180

Query: 187 QTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDR--SSESDQEISSSTIEKAQKLVSE 244
            TEDG+LF WG +++G+IG         P    + +  S  S     S+ +    +L + 
Sbjct: 181 LTEDGELFMWGDNSEGQIGLQNITNMCVPHQVTVGKPISWISCGYYHSAFVTTEGELYTF 240

Query: 245 GMEKEKYMPIIWE-------PFLVEGV--EVVDIACGFDHSLVLGRNGVLLSCGSNVYGQ 295
           G  +   + +  +       P LV G+  +V+ +ACG  H++VL    V  + G   +GQ
Sbjct: 241 GEPESGKLGLPPKLLVNHKVPQLVPGISEKVIQVACGGGHTVVLTEKAV-YTFGLGQFGQ 299

Query: 296 LG 297
           LG
Sbjct: 300 LG 301



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 56/185 (30%), Positives = 93/185 (50%), Gaps = 18/185 (9%)

Query: 32  FGDGSQGALGLPTSLTGVGGDAYEPTRVP-GLPSDVTSVSAGHYHSLAVTNNGAVWAWGR 90
           +GD S+G +GL  ++T    +   P +V  G P  ++ +S G+YHS  VT  G ++ +G 
Sbjct: 190 WGDNSEGQIGL-QNIT----NMCVPHQVTVGKP--ISWISCGYYHSAFVTTEGELYTFG- 241

Query: 91  NNEVQLGRGALESRATWND--PKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKR 148
             E + G+  L  +   N   P+ V G+ +  +  A   G   + +  + +++ +G  + 
Sbjct: 242 --EPESGKLGLPPKLLVNHKVPQLVPGISEKVIQVACGGG--HTVVLTEKAVYTFGLGQF 297

Query: 149 GQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLG 208
           GQLGLG    E   P  +E++  +KI  V  G  H    TE G L+ +G   DGR G LG
Sbjct: 298 GQLGLGTFTFETSEPKVIESVKDKKISHVCCGENHTALITESGLLYTFG---DGRHGKLG 354

Query: 209 KALES 213
             +E+
Sbjct: 355 LGMEN 359



 Score = 51.2 bits (121), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 36/126 (28%), Positives = 59/126 (46%), Gaps = 6/126 (4%)

Query: 31  SFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGR 90
           +FG+   G LGLP  L     +   P  VPG+   V  V+ G  H++ +T   AV+ +G 
Sbjct: 239 TFGEPESGKLGLPPKLL---VNHKVPQLVPGISEKVIQVACGGGHTVVLTEK-AVYTFGL 294

Query: 91  NNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQ 150
               QLG G      +  +PK +E +    +         ++ I + G L+ +G  + G+
Sbjct: 295 GQFGQLGLGTFTFETS--EPKVIESVKDKKISHVCCGENHTALITESGLLYTFGDGRHGK 352

Query: 151 LGLGKD 156
           LGLG +
Sbjct: 353 LGLGME 358


>gi|351702482|gb|EHB05401.1| Putative E3 ubiquitin-protein ligase HERC4 [Heterocephalus glaber]
          Length = 1057

 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 65/245 (26%), Positives = 114/245 (46%), Gaps = 43/245 (17%)

Query: 55  EPTRVPGLPS-DVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRV 113
           +P +V  L + ++ +VS G  H+LA+ + G V+AWG +++ QLG   L S      P+ +
Sbjct: 74  KPEQVVALDAQNIVAVSCGEAHTLALNDKGQVYAWGLDSDGQLG--LLGSEECIRVPRNI 131

Query: 114 EGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEK 173
           + L  + +         S A+     ++ WG++K GQLGLG D  +   P  +++L G  
Sbjct: 132 KSLSDIQIVQVSCGYYHSLALSKASEVFSWGQNKYGQLGLGIDCKKQTSPQLIKSLLGIP 191

Query: 174 IVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSS 233
            ++V+ G  H+   T  G +FGWG +  G++G          L+                
Sbjct: 192 FMQVAAGGAHSFVLTLSGAIFGWGRNKFGQLG----------LND--------------- 226

Query: 234 TIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVY 293
                        E ++Y+P + +   +   ++V I CG DH+  L + G + + G+  Y
Sbjct: 227 -------------ENDRYVPNLLKS--LRSQKIVYICCGEDHTAALTKEGGVFTFGAGGY 271

Query: 294 GQLGR 298
           GQLG 
Sbjct: 272 GQLGH 276



 Score = 81.6 bits (200), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 62/192 (32%), Positives = 101/192 (52%), Gaps = 16/192 (8%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVP-GLPS----DVTSVSAGHYHSLAVTNNG 83
           V ++G  S G LGL      +G +  E  RVP  + S     +  VS G+YHSLA++   
Sbjct: 105 VYAWGLDSDGQLGL------LGSE--ECIRVPRNIKSLSDIQIVQVSCGYYHSLALSKAS 156

Query: 84  AVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVW 143
            V++WG+N   QLG G    + T   P+ ++ L  +      A G  S  +   G+++ W
Sbjct: 157 EVFSWGQNKYGQLGLGIDCKKQT--SPQLIKSLLGIPFMQVAAGGAHSFVLTLSGAIFGW 214

Query: 144 GKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGR 203
           G++K GQLGL  D  +  VP+ +++L  +KIV +  G  H  A T++G +F +G    G+
Sbjct: 215 GRNKFGQLGLN-DENDRYVPNLLKSLRSQKIVYICCGEDHTAALTKEGGVFTFGAGGYGQ 273

Query: 204 IGNLGKALESSP 215
           +G+   + E +P
Sbjct: 274 LGHNSTSHEINP 285



 Score = 71.6 bits (174), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 68/275 (24%), Positives = 113/275 (41%), Gaps = 57/275 (20%)

Query: 85  VWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWG 144
           +  WG  +  QLG G ++      +P++ +      V         +  + DDG+++  G
Sbjct: 1   MLCWGNASFGQLGLGGIDEEIVL-EPRKSDFFINKKVRDVGCGLRHTVFVLDDGTVYTCG 59

Query: 145 KSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRI 204
            +  GQLG  K   +   P +V AL  + IV VS G  H LA  + G+++ WG  +DG++
Sbjct: 60  CNDLGQLGHEKSRKK---PEQVVALDAQNIVAVSCGEAHTLALNDKGQVYAWGLDSDGQL 116

Query: 205 GNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGV 264
           G LG   E   +  NI   S+                                      +
Sbjct: 117 GLLGSE-ECIRVPRNIKSLSD--------------------------------------I 137

Query: 265 EVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLG-----REKQDMGMFPVDINFHPVSISS 319
           ++V ++CG+ HSL L +   + S G N YGQLG     +++    +    +    + +++
Sbjct: 138 QIVQVSCGYYHSLALSKASEVFSWGQNKYGQLGLGIDCKKQTSPQLIKSLLGIPFMQVAA 197

Query: 320 GLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLG 354
           G  HS  +          GA  I  WG N+  QLG
Sbjct: 198 GGAHSFVL-------TLSGA--IFGWGRNKFGQLG 223


>gi|150026491|ref|YP_001297317.1| RCC1 repeat-containing protein [Flavobacterium psychrophilum
           JIP02/86]
 gi|149773032|emb|CAL44516.1| RCC1 (Regulator of Chromosome Condensation) repeat domain protein
           [Flavobacterium psychrophilum JIP02/86]
          Length = 456

 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 76/268 (28%), Positives = 122/268 (45%), Gaps = 57/268 (21%)

Query: 31  SFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGR 90
           ++GD + G LG  T++  +      PT++ G  +D   VSAG  H+LA   NG +WAWGR
Sbjct: 145 AWGDNTYGQLGDNTTVNKI-----VPTQI-GSDTDWLLVSAGTNHTLATKTNGTLWAWGR 198

Query: 91  NNEVQLGRGALESRATWNDPKRV-EGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRG 149
           NN  QLG     ++     P ++    D  NV A+    + S+A   DGS+W WG +  G
Sbjct: 199 NNTGQLGDNTTLNKII---PTQIGADSDWQNVMASI---LHSAATKSDGSIWTWGNNTNG 252

Query: 150 QLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGK 209
           QLG G  +   I+P  +  +       ++ G  H +A+  DG L+ WG +A G++G+   
Sbjct: 253 QLGDGT-VVGKIIPVNITTVTNCNW--IAKGHQHTIAKKSDGSLWAWGGNASGQLGD--- 306

Query: 210 ALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDI 269
                                 +ST +K   +   G+  +      W          + +
Sbjct: 307 ----------------------ASTTQKNSPVAVSGLTTD------W----------LTV 328

Query: 270 ACGFDHSLVLGRNGVLLSCGSNVYGQLG 297
                H++ L  +G L + G+N+YGQLG
Sbjct: 329 NSKLSHTIALKNDGTLYTWGANLYGQLG 356



 Score = 81.6 bits (200), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 85/341 (24%), Positives = 147/341 (43%), Gaps = 55/341 (16%)

Query: 35  GSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEV 94
           G  G  G P + + +      P +V G  ++  +++AG+ H++A+  NG +W WG N   
Sbjct: 50  GQLGTAGTPATFSNI------PIQV-GTATNWQTIAAGNAHNVAIKTNGTLWTWGHNQAS 102

Query: 95  QLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLG 154
           QLG G+  +    N P ++          A    V+  AI  DG+LW WG +  GQLG  
Sbjct: 103 QLGDGSTTNS---NIPIQIGTATNWRFITAGDEYVI--AIKLDGTLWAWGDNTYGQLGDN 157

Query: 155 KDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESS 214
             + + IVP+++   +    + VS G  H LA   +G L+ WG +  G++G      +++
Sbjct: 158 TTVNK-IVPTQIG--SDTDWLLVSAGTNHTLATKTNGTLWAWGRNNTGQLG------DNT 208

Query: 215 PLDSNIDRSSESD---QEISSSTIEKAQK---------------LVSEGMEKEKYMPIIW 256
            L+  I     +D   Q + +S +  A                  + +G    K +P+  
Sbjct: 209 TLNKIIPTQIGADSDWQNVMASILHSAATKSDGSIWTWGNNTNGQLGDGTVVGKIIPV-- 266

Query: 257 EPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDIN---FH 313
              +        IA G  H++    +G L + G N  GQLG         PV ++     
Sbjct: 267 --NITTVTNCNWIAKGHQHTIAKKSDGSLWAWGGNASGQLGDASTTQKNSPVAVSGLTTD 324

Query: 314 PVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLG 354
            ++++S L H++A+    +         + +WG N   QLG
Sbjct: 325 WLTVNSKLSHTIALKNDGT---------LYTWGANLYGQLG 356



 Score = 62.0 bits (149), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 78/319 (24%), Positives = 129/319 (40%), Gaps = 33/319 (10%)

Query: 68  SVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRV-EGLDQVNVCAAFA 126
           SVSAG  HSL +   G +W+WGRN   QLG     +  + N P +V    +   + A  A
Sbjct: 24  SVSAGGSHSLGIRTGGTLWSWGRNYFGQLGTAGTPATFS-NIPIQVGTATNWQTIAAGNA 82

Query: 127 SGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALA 186
             V   AI  +G+LW WG ++  QLG G   T + +P ++      + +    G  + +A
Sbjct: 83  HNV---AIKTNGTLWTWGHNQASQLGDGS-TTNSNIPIQIGTATNWRFITA--GDEYVIA 136

Query: 187 QTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDR-----SSESDQEISSSTI------ 235
              DG L+ WG +  G++G+     +  P     D      S+ ++  +++ T       
Sbjct: 137 IKLDGTLWAWGDNTYGQLGDNTTVNKIVPTQIGSDTDWLLVSAGTNHTLATKTNGTLWAW 196

Query: 236 -EKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYG 294
                  + +     K +P      +    +  ++     HS     +G + + G+N  G
Sbjct: 197 GRNNTGQLGDNTTLNKIIP----TQIGADSDWQNVMASILHSAATKSDGSIWTWGNNTNG 252

Query: 295 QLGREKQDMGMFPVDINFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLG 354
           QLG       + PV+I           GH   I +    +       + +WG N S QLG
Sbjct: 253 QLGDGTVVGKIIPVNITTVTNCNWIAKGHQHTIAKKSDGS-------LWAWGGNASGQLG 305

Query: 355 --RMGPDNVPLVVEGLEGE 371
                  N P+ V GL  +
Sbjct: 306 DASTTQKNSPVAVSGLTTD 324



 Score = 54.7 bits (130), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 35/108 (32%), Positives = 59/108 (54%), Gaps = 14/108 (12%)

Query: 62  LPSDVTSVS------AGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEG 115
           +P ++T+V+       GH H++A  ++G++WAWG N   QLG  +   +   N P  V G
Sbjct: 264 IPVNITTVTNCNWIAKGHQHTIAKKSDGSLWAWGGNASGQLGDASTTQK---NSPVAVSG 320

Query: 116 L--DQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAI 161
           L  D + V +  +  +   A+ +DG+L+ WG +  GQLG   +I + I
Sbjct: 321 LTTDWLTVNSKLSHTI---ALKNDGTLYTWGANLYGQLGDASNIAKDI 365


>gi|149033232|gb|EDL88033.1| potential ubiquitin ligase, isoform CRA_a [Rattus norvegicus]
          Length = 449

 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 75/263 (28%), Positives = 130/263 (49%), Gaps = 28/263 (10%)

Query: 55  EPTRV-PGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRV 113
           +P R+  G    +   ++G  HSL + +N  V++ G N+  QLG+   +S  +   P+ +
Sbjct: 11  QPRRLEAGTGLKLLKAASGERHSLLLFSNHRVYSCGDNSRGQLGQ---KSPQSTKRPEPI 67

Query: 114 EGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEK 173
           + L  V++         S A+   G ++ WG    GQLG+G+    + +P+++ +LAG K
Sbjct: 68  QALSTVHIDLVSCGKEHSVAVCHQGRVFTWGAGSEGQLGIGESKEISFMPTKINSLAGIK 127

Query: 174 IVKVSFGWGHALAQTEDGKLFGWGYSADGRIG---NLG--------KALESSPLDSNIDR 222
           I++VS G  H+LA +EDG++F WG +  G++G   NL         K+LE  PL      
Sbjct: 128 IIQVSCGHYHSLALSEDGQVFSWGSNRQGQLGLGNNLCSQASPQKVKSLEGIPLAQVAAG 187

Query: 223 SSESDQEISSSTI------EKAQKLVSEGMEKEKYMPIIWEPFLV---EGVEVVDIACGF 273
            + S       T          Q  +S    KE+    I++P  +   + + VV I+CG+
Sbjct: 188 GTHSFALSLMGTSFGWGNNRSGQLALSGNSAKEQ----IYKPHSIGALKTLNVVYISCGY 243

Query: 274 DHSLVLGRNGVLLSCGSNVYGQL 296
           +H+ VL  +G + + G +   QL
Sbjct: 244 EHTSVLTEDGQVFTFGGSSSEQL 266



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 53/216 (24%), Positives = 89/216 (41%), Gaps = 57/216 (26%)

Query: 163 PSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDR 222
           P R+EA  G K++K + G  H+L    + +++  G ++ G++G      + SP  +   +
Sbjct: 12  PRRLEAGTGLKLLKAASGERHSLLLFSNHRVYSCGDNSRGQLG------QKSPQST---K 62

Query: 223 SSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRN 282
             E  Q +S+                               V +  ++CG +HS+ +   
Sbjct: 63  RPEPIQALST-------------------------------VHIDLVSCGKEHSVAVCHQ 91

Query: 283 GVLLSCGSNVYGQLGR-EKQDMGMFPVDIN----FHPVSISSGLGHSLAICEVRSSNVTG 337
           G + + G+   GQLG  E +++   P  IN       + +S G  HSLA+ E        
Sbjct: 92  GRVFTWGAGSEGQLGIGESKEISFMPTKINSLAGIKIIQVSCGHYHSLALSEDGQ----- 146

Query: 338 GARGIVSWGWNRSSQLG---RMGPDNVPLVVEGLEG 370
               + SWG NR  QLG    +     P  V+ LEG
Sbjct: 147 ----VFSWGSNRQGQLGLGNNLCSQASPQKVKSLEG 178


>gi|260832812|ref|XP_002611351.1| hypothetical protein BRAFLDRAFT_73256 [Branchiostoma floridae]
 gi|229296722|gb|EEN67361.1| hypothetical protein BRAFLDRAFT_73256 [Branchiostoma floridae]
          Length = 1152

 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 68/203 (33%), Positives = 103/203 (50%), Gaps = 16/203 (7%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPS----DVTSVSAGHYHSLAVTNNGA 84
           + ++G G+ G LG      G   D   PT V  L      D+    +G   +LAVT++G 
Sbjct: 316 LFTWGRGNYGRLG-----HGSSEDQLTPTLVVSLKGRRVIDI-CCGSGDAQTLAVTDDGT 369

Query: 85  VWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWG 144
           VW+WG  +  +LGRG  +   T     R++G D V VC        S A+   G +W WG
Sbjct: 370 VWSWGDGDYGKLGRGGSDGCKTPKIIDRLQGQDIVRVCCG---AQFSLALTKTGHIWTWG 426

Query: 145 KSKRGQLGLGKDITEAI-VPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGR 203
           K    +LG G +  E I  P ++E L G+K+V V+ G  H L  TE+G+++GWG +  G+
Sbjct: 427 KGDSQRLGHGTE--EHIRFPKQLEGLRGKKVVDVAVGSMHCLVMTEEGEVYGWGRNDQGQ 484

Query: 204 IGNLGKALESSPLDSNIDRSSES 226
           +G+   + +S P    +D  S S
Sbjct: 485 LGDSSFSTKSDPTLMPLDGKSIS 507



 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 83/299 (27%), Positives = 124/299 (41%), Gaps = 56/299 (18%)

Query: 20  FMRSASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLP-----SDVTSVSAGHY 74
           +M   S   V S+G+G  G LG      G      EPT V GL        V  +  G  
Sbjct: 251 YMALTSEGEVYSWGNGDGGRLG-----HGDTNSREEPTLVRGLSGKQLGRHVVHIVCGST 305

Query: 75  HSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAI 134
           +S A+T +G ++ WGR N  +LG G+ E + T      ++G   +++C   +    + A+
Sbjct: 306 YSAAITADGELFTWGRGNYGRLGHGSSEDQLTPTLVVSLKGRRVIDICCG-SGDAQTLAV 364

Query: 135 GDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLF 194
            DDG++W WG    G+LG G        P  ++ L G+ IV+V  G   +LA T+ G ++
Sbjct: 365 TDDGTVWSWGDGDYGKLGRGGS-DGCKTPKIIDRLQGQDIVRVCCGAQFSLALTKTGHIW 423

Query: 195 GWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPI 254
            WG     R+G+                                      G E+    P 
Sbjct: 424 TWGKGDSQRLGH--------------------------------------GTEEHIRFPK 445

Query: 255 IWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLG----REKQDMGMFPVD 309
             E   + G +VVD+A G  H LV+   G +   G N  GQLG      K D  + P+D
Sbjct: 446 QLEG--LRGKKVVDVAVGSMHCLVMTEEGEVYGWGRNDQGQLGDSSFSTKSDPTLMPLD 502



 Score = 43.9 bits (102), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 65/307 (21%), Positives = 116/307 (37%), Gaps = 77/307 (25%)

Query: 77  LAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGD 136
           +A+T  G V+    ++E Q G   +ES A            +V   AA   G    A+  
Sbjct: 160 IALTKTGRVYMCFYSSESQ-GPQLMESLAD----------KEVLKVAAHPEGKHYMALTS 208

Query: 137 DGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGW----GHALAQTEDGK 192
           +G ++ WG    G+LG G                G+K++ + + +     H +A T +G+
Sbjct: 209 EGEVYSWGNGDGGRLGHGDTNV---------CYKGQKVLVIVYPYHPEGKHYMALTSEGE 259

Query: 193 LFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYM 252
           ++ WG    GR+G+                           T  + +  +  G+  ++  
Sbjct: 260 VYSWGNGDGGRLGH-------------------------GDTNSREEPTLVRGLSGKQL- 293

Query: 253 PIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDI-- 310
                     G  VV I CG  +S  +  +G L + G   YG+LG    +  + P  +  
Sbjct: 294 ----------GRHVVHIVCGSTYSAAITADGELFTWGRGNYGRLGHGSSEDQLTPTLVVS 343

Query: 311 ----NFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPD--NVPLV 364
                   +   SG   +LA+ +  +         + SWG     +LGR G D    P +
Sbjct: 344 LKGRRVIDICCGSGDAQTLAVTDDGT---------VWSWGDGDYGKLGRGGSDGCKTPKI 394

Query: 365 VEGLEGE 371
           ++ L+G+
Sbjct: 395 IDRLQGQ 401


>gi|395741726|ref|XP_003777632.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC4 [Pongo
           abelii]
          Length = 1049

 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 64/245 (26%), Positives = 114/245 (46%), Gaps = 43/245 (17%)

Query: 55  EPTRVPGLPS-DVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRV 113
           +P +V  L + ++ +VS G  H+LA+ + G V+AWG +++ QLG   + S      P+ +
Sbjct: 74  KPEQVVALDAQNIVAVSCGEAHTLALNDKGQVYAWGLDSDGQLG--LVGSEECIRVPRNI 131

Query: 114 EGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEK 173
           + L  + +         S A+     ++ WG++K GQLGLG D  +   P  +++L G  
Sbjct: 132 KSLSDIQIVQVACGYCHSLALSKASEVFCWGQNKYGQLGLGTDCKKQTSPQLLKSLLGIP 191

Query: 174 IVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSS 233
            ++V+ G  H+   T  G +FGWG +  G++G          L+                
Sbjct: 192 FMQVAAGGAHSFVLTLSGAIFGWGRNKFGQLG----------LND--------------- 226

Query: 234 TIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVY 293
                        E ++Y+P + +   +   ++V I CG DH+  L + G + + G+  Y
Sbjct: 227 -------------ENDRYVPNLLKS--LRSQKIVYICCGEDHTAALTKEGGVFTFGAGGY 271

Query: 294 GQLGR 298
           GQLG 
Sbjct: 272 GQLGH 276



 Score = 77.8 bits (190), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 61/192 (31%), Positives = 99/192 (51%), Gaps = 16/192 (8%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVP-GLPS----DVTSVSAGHYHSLAVTNNG 83
           V ++G  S G LGL      VG +  E  RVP  + S     +  V+ G+ HSLA++   
Sbjct: 105 VYAWGLDSDGQLGL------VGSE--ECIRVPRNIKSLSDIQIVQVACGYCHSLALSKAS 156

Query: 84  AVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVW 143
            V+ WG+N   QLG G    + T   P+ ++ L  +      A G  S  +   G+++ W
Sbjct: 157 EVFCWGQNKYGQLGLGTDCKKQT--SPQLLKSLLGIPFMQVAAGGAHSFVLTLSGAIFGW 214

Query: 144 GKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGR 203
           G++K GQLGL  D  +  VP+ +++L  +KIV +  G  H  A T++G +F +G    G+
Sbjct: 215 GRNKFGQLGLN-DENDRYVPNLLKSLRSQKIVYICCGEDHTAALTKEGGVFTFGAGGYGQ 273

Query: 204 IGNLGKALESSP 215
           +G+   + E +P
Sbjct: 274 LGHNSTSHEINP 285



 Score = 70.5 bits (171), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 67/275 (24%), Positives = 112/275 (40%), Gaps = 57/275 (20%)

Query: 85  VWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWG 144
           +  WG  +  QLG G ++      +P++ +      V         +  + DDG+++  G
Sbjct: 1   MLCWGNASFGQLGLGGIDEEIVL-EPRKSDFFINKKVRDVGCGLRHTVFVLDDGTVYTCG 59

Query: 145 KSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRI 204
            +  GQLG  K   +   P +V AL  + IV VS G  H LA  + G+++ WG  +DG++
Sbjct: 60  CNDLGQLGHEKSRKK---PEQVVALDAQNIVAVSCGEAHTLALNDKGQVYAWGLDSDGQL 116

Query: 205 GNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGV 264
           G +G   E   +  NI   S+                                      +
Sbjct: 117 GLVGSE-ECIRVPRNIKSLSD--------------------------------------I 137

Query: 265 EVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLG-----REKQDMGMFPVDINFHPVSISS 319
           ++V +ACG+ HSL L +   +   G N YGQLG     +++    +    +    + +++
Sbjct: 138 QIVQVACGYCHSLALSKASEVFCWGQNKYGQLGLGTDCKKQTSPQLLKSLLGIPFMQVAA 197

Query: 320 GLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLG 354
           G  HS  +          GA  I  WG N+  QLG
Sbjct: 198 GGAHSFVL-------TLSGA--IFGWGRNKFGQLG 223


>gi|330837350|ref|YP_004411991.1| hypothetical protein [Sphaerochaeta coccoides DSM 17374]
 gi|329749253|gb|AEC02609.1| Listeria/Bacterioides repeat-containing protein [Sphaerochaeta
           coccoides DSM 17374]
          Length = 847

 Score = 92.8 bits (229), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 71/277 (25%), Positives = 133/277 (48%), Gaps = 26/277 (9%)

Query: 66  VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAF 125
           + +VSAG  H++ +  +G +WA G N   QLG   + +R T   P RV     ++V A  
Sbjct: 495 IKAVSAGKSHTMILKMDGTLWATGDNYYGQLGDKTMPTRTT---PVRVS----LDVAAVS 547

Query: 126 ASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAG-----EKIVKVSFG 180
           A    +  +  +G+LW  G++  GQLG    I+  I P +V+           +V VS G
Sbjct: 548 AGESHTMILKKNGTLWATGRNNYGQLGDATRISRYI-PVQVKVSTSLTDFMTDVVAVSTG 606

Query: 181 WGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQK 240
             H +   +DG L+  G +  G++G+     +++P+   +D ++ S     +  ++K   
Sbjct: 607 ERHTMILKKDGTLWATGDNEFGQVGDKTMTTKTTPVRMGLDVAAVSAGATHTMILKKDGT 666

Query: 241 LVSEG----------MEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGS 290
           L + G             ++ MP++    +  G +V  ++ G  H+++L ++G L + G 
Sbjct: 667 LWATGRNYSGQLGDDTRTDRRMPVL---VMSIGSDVAAVSAGATHTMILKKDGTLWATGD 723

Query: 291 NVYGQLGREKQDMGMFPVDINFHPVSISSGLGHSLAI 327
           N YGQLG    +    PV +     ++S+G+ H++ +
Sbjct: 724 NSYGQLGIGNNEDKNTPVKVMTDVKAVSAGVSHTMIL 760



 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 67/266 (25%), Positives = 121/266 (45%), Gaps = 19/266 (7%)

Query: 57  TRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGL 116
           T +    +DV +VS G  H++ +  +G +WA G N   Q+G   + ++ T   P R+ GL
Sbjct: 591 TSLTDFMTDVVAVSTGERHTMILKKDGTLWATGDNEFGQVGDKTMTTKTT---PVRM-GL 646

Query: 117 DQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVK 176
           D   V A  A    +  +  DG+LW  G++  GQLG     T+  +P  V ++ G  +  
Sbjct: 647 D---VAAVSAGATHTMILKKDGTLWATGRNYSGQLG-DDTRTDRRMPVLVMSI-GSDVAA 701

Query: 177 VSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIE 236
           VS G  H +   +DG L+  G ++ G++G      +++P+    D  + S     +  ++
Sbjct: 702 VSAGATHTMILKKDGTLWATGDNSYGQLGIGNNEDKNTPVKVMTDVKAVSAGVSHTMILK 761

Query: 237 KAQKLVSEGMEK----------EKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLL 286
           K   L + G  +           +      +     G +V +++ G + +++L ++G L 
Sbjct: 762 KDGTLWATGNNEYGQLGLGDSGSRTHRCTPKQVTSMGSDVAEVSAGAELTMILKKDGTLW 821

Query: 287 SCGSNVYGQLGREKQDMGMFPVDINF 312
           + G N +GQ G         PV I F
Sbjct: 822 ATGRNRFGQRGDGDTSEKTTPVQIIF 847



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 45/134 (33%), Positives = 67/134 (50%), Gaps = 10/134 (7%)

Query: 33  GDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNN 92
           GD S G LG+     G   D   P +V    +DV +VSAG  H++ +  +G +WA G N 
Sbjct: 722 GDNSYGQLGI-----GNNEDKNTPVKVM---TDVKAVSAGVSHTMILKKDGTLWATGNNE 773

Query: 93  EVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLG 152
             QLG G   SR     PK+V  +   +V    A   ++  +  DG+LW  G+++ GQ G
Sbjct: 774 YGQLGLGDSGSRTHRCTPKQVTSMGS-DVAEVSAGAELTMILKKDGTLWATGRNRFGQRG 832

Query: 153 LGKDITEAIVPSRV 166
            G D +E   P ++
Sbjct: 833 DG-DTSEKTTPVQI 845


>gi|294816129|ref|ZP_06774772.1| RCC1 repeat domain protein [Streptomyces clavuligerus ATCC 27064]
 gi|326444464|ref|ZP_08219198.1| regulator of chromosome condensation-like protein [Streptomyces
           clavuligerus ATCC 27064]
 gi|294328728|gb|EFG10371.1| RCC1 repeat domain protein [Streptomyces clavuligerus ATCC 27064]
          Length = 410

 Score = 92.8 bits (229), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 89/299 (29%), Positives = 135/299 (45%), Gaps = 30/299 (10%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAW 88
           V ++G   +G LG  T+      D   P  V GL S ++ ++AG  H+LAV + G V +W
Sbjct: 110 VQAWGGNDKGQLGNGTTT-----DQGFPAMVAGL-SGISEIAAGGDHALAV-HGGRVMSW 162

Query: 89  GRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKR 148
           G N + QLG GA         P  V+ L +V    A  +   S A+G DG+LW WG   +
Sbjct: 163 GGNGKGQLGAGAATDPT--KTPVVVQSLTRVKDVGAGCA--FSVALGQDGTLWSWGAGAK 218

Query: 149 GQLGLG-KDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNL 207
           GQLGLG  ++T+   P +V+ ++   I  ++ G  H LA T  GK+  WG + +G++GN 
Sbjct: 219 GQLGLGAANLTDHNTPQQVKGVS--DIAAIAVGCEHVLALTSTGKVKAWGGNTNGQLGNN 276

Query: 208 GKALESSPLD--------SNIDRSSESDQEISSSTI----EKAQKLVSEGMEKEKYMPII 255
                  P+D        S    +  S   +S  T+       +  + +G    +  P+ 
Sbjct: 277 TTTDSGEPVDVQFVDAVTSLYATAYGSFATLSDGTVWAWGANTKGQLGDGTLLNRTTPVP 336

Query: 256 WEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFHP 314
            E         V IA G DH++    NG + + G N  GQLG         P  +   P
Sbjct: 337 IETL----SGAVHIAGGSDHTVAARDNGSVTAWGDNAKGQLGDGTTTSAPKPGTVTTLP 391



 Score = 65.5 bits (158), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 68/244 (27%), Positives = 99/244 (40%), Gaps = 50/244 (20%)

Query: 70  SAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGV 129
           S G   ++A+  NG V AWG N++ QLG G    +     P  V GL  ++  AA     
Sbjct: 95  SLGRPFAVALMENGTVQAWGGNDKGQLGNGTTTDQGF---PAMVAGLSGISEIAAGGDHA 151

Query: 130 VSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTE 189
           ++      G +  WG + +GQLG G        P  V++L   ++  V  G   ++A  +
Sbjct: 152 LAV---HGGRVMSWGGNGKGQLGAGAATDPTKTPVVVQSL--TRVKDVGAGCAFSVALGQ 206

Query: 190 DGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKE 249
           DG L+ WG  A G++G LG A   +  D N                              
Sbjct: 207 DGTLWSWGAGAKGQLG-LGAA---NLTDHNT----------------------------- 233

Query: 250 KYMPIIWEPFLVEGV-EVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPV 308
                   P  V+GV ++  IA G +H L L   G + + G N  GQLG         PV
Sbjct: 234 --------PQQVKGVSDIAAIAVGCEHVLALTSTGKVKAWGGNTNGQLGNNTTTDSGEPV 285

Query: 309 DINF 312
           D+ F
Sbjct: 286 DVQF 289



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 54/151 (35%), Positives = 75/151 (49%), Gaps = 13/151 (8%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAW 88
           V ++G  + G LG  T+      D+ EP  V      VTS+ A  Y S A  ++G VWAW
Sbjct: 262 VKAWGGNTNGQLGNNTTT-----DSGEPVDVQ-FVDAVTSLYATAYGSFATLSDGTVWAW 315

Query: 89  GRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKR 148
           G N + QLG G L +R T   P  +E L      A  +   V++   D+GS+  WG + +
Sbjct: 316 GANTKGQLGDGTLLNRTT---PVPIETLSGAVHIAGGSDHTVAAR--DNGSVTAWGDNAK 370

Query: 149 GQLGLGKDITEAIVPSRVEAL-AGEKIVKVS 178
           GQLG G   T A  P  V  L  G  ++KV+
Sbjct: 371 GQLGDGT-TTSAPKPGTVTTLPPGSGVLKVA 400


>gi|354477678|ref|XP_003501046.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC4 isoform 2
           [Cricetulus griseus]
          Length = 1057

 Score = 92.8 bits (229), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 64/245 (26%), Positives = 114/245 (46%), Gaps = 43/245 (17%)

Query: 55  EPTRVPGLPS-DVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRV 113
           +P +V  L + ++ +VS G  H+LA+ + G V++WG +++ QLG   L S      P+ +
Sbjct: 74  KPEQVVALDAQNIVAVSCGEAHTLALNDKGQVYSWGLDSDGQLG--LLGSEEYIRVPRNI 131

Query: 114 EGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEK 173
           + L  + +         S A+     ++ WG++K GQLGLG D  +   P  +++L G  
Sbjct: 132 KSLSDIQIVQVACGYYHSLALSKASEVFCWGQNKYGQLGLGIDCKKQTSPQLIKSLLGIP 191

Query: 174 IVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSS 233
            ++V+ G  H+   T  G +FGWG +  G++G          L+                
Sbjct: 192 FMQVAAGGAHSFVLTLSGAIFGWGRNKFGQLG----------LND--------------- 226

Query: 234 TIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVY 293
                        E ++Y+P + +   +   ++V I CG DH+  L + G + + G+  Y
Sbjct: 227 -------------ENDRYVPNLLKS--LRSQKIVYICCGEDHTAALTKEGGVFTFGAGGY 271

Query: 294 GQLGR 298
           GQLG 
Sbjct: 272 GQLGH 276



 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 60/190 (31%), Positives = 98/190 (51%), Gaps = 12/190 (6%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAY--EPTRVPGLPS-DVTSVSAGHYHSLAVTNNGAV 85
           V S+G  S G LGL      +G + Y   P  +  L    +  V+ G+YHSLA++    V
Sbjct: 105 VYSWGLDSDGQLGL------LGSEEYIRVPRNIKSLSDIQIVQVACGYYHSLALSKASEV 158

Query: 86  WAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGK 145
           + WG+N   QLG G    + T   P+ ++ L  +      A G  S  +   G+++ WG+
Sbjct: 159 FCWGQNKYGQLGLGIDCKKQT--SPQLIKSLLGIPFMQVAAGGAHSFVLTLSGAIFGWGR 216

Query: 146 SKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIG 205
           +K GQLGL  D  +  VP+ +++L  +KIV +  G  H  A T++G +F +G    G++G
Sbjct: 217 NKFGQLGLN-DENDRYVPNLLKSLRSQKIVYICCGEDHTAALTKEGGVFTFGAGGYGQLG 275

Query: 206 NLGKALESSP 215
           +   + E +P
Sbjct: 276 HNSTSHEINP 285



 Score = 72.0 bits (175), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 69/295 (23%), Positives = 121/295 (41%), Gaps = 59/295 (20%)

Query: 85  VWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWG 144
           +  WG  +  QLG G ++      +P++ +      V         +  + DDG+++  G
Sbjct: 1   MLCWGNASYGQLGLGGIDEEIVL-EPRKSDFFANKKVRDVGCGLRHTVFVLDDGTVYTCG 59

Query: 145 KSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRI 204
            +  GQLG  K   +   P +V AL  + IV VS G  H LA  + G+++ WG  +DG++
Sbjct: 60  CNDLGQLGHEKSRKK---PEQVVALDAQNIVAVSCGEAHTLALNDKGQVYSWGLDSDGQL 116

Query: 205 GNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGV 264
           G LG                                        E+Y+ +      +  +
Sbjct: 117 GLLG---------------------------------------SEEYIRVPRNIKSLSDI 137

Query: 265 EVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLG-----REKQDMGMFPVDINFHPVSISS 319
           ++V +ACG+ HSL L +   +   G N YGQLG     +++    +    +    + +++
Sbjct: 138 QIVQVACGYYHSLALSKASEVFCWGQNKYGQLGLGIDCKKQTSPQLIKSLLGIPFMQVAA 197

Query: 320 GLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPDN--VPLVVEGLEGES 372
           G  HS  +          GA  I  WG N+  QLG    ++  VP +++ L  + 
Sbjct: 198 GGAHSFVL-------TLSGA--IFGWGRNKFGQLGLNDENDRYVPNLLKSLRSQK 243


>gi|449673459|ref|XP_002164132.2| PREDICTED: E3 ubiquitin-protein ligase HERC2-like [Hydra
            magnipapillata]
          Length = 2284

 Score = 92.8 bits (229), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 102/363 (28%), Positives = 160/363 (44%), Gaps = 67/363 (18%)

Query: 1    MRLLKSVVHNHVNVLTSRIFMRSASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVP 60
            ++L+ +++  H   +       +  G  V + G G+ G LGL  S T       E  +  
Sbjct: 1468 VKLIDNLLKEHNVKIDCDTVCITTDGALVFATGYGNNGQLGLGYSETVTSPRLLESIKHI 1527

Query: 61   GLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVE---GLD 117
             +     SV +G  H LA++++G V++WG   + +LG G   +R T + PKR+E   G  
Sbjct: 1528 NIKK--ISVHSGGRHCLALSSDGEVFSWGEGEDGKLGHG---NRQTSSQPKRIEFFCGKI 1582

Query: 118  QVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKV 177
              N+CA    G  S+AIG +G L+ WGK + G+LG G D  + + P +VEAL    ++ V
Sbjct: 1583 ITNICAG---GSHSAAIGLNGELYTWGKGRYGRLGHG-DSDDQLKPKQVEALQFFFVLDV 1638

Query: 178  SFGWGHA--LAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTI 235
            + G G A  L  T D  ++ WG   DG  G LG+                          
Sbjct: 1639 ACGSGDAQTLCITNDDNVWSWG---DGDYGKLGRG------------------------- 1670

Query: 236  EKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQ 295
                   S+G +    +P+I E   + G  +V + CG   S+ L + GVL + G   Y +
Sbjct: 1671 ------GSDGCK----VPMIIED--LSGKGIVKVECGSQFSMALTKYGVLYTWGKGDYYR 1718

Query: 296  LGREKQDMGMFPVDIN--FHPV--SISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSS 351
            LG   ++    P+ +   F+ +  SIS G  H +         V      +  WG N   
Sbjct: 1719 LGHGTEEHVRRPMMVTALFNKIVTSISCGSLHCV---------VCTDEGEVYCWGDNDEG 1769

Query: 352  QLG 354
            QLG
Sbjct: 1770 QLG 1772



 Score = 82.0 bits (201), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 47/143 (32%), Positives = 74/143 (51%), Gaps = 6/143 (4%)

Query: 65  DVTSVSAGHY--HSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVC 122
           +V  VS G     ++ +T++  VW+WG  +  +LGRG  E       P  VE L  + +C
Sbjct: 751 NVVQVSCGSRDAQTVCITDDDKVWSWGDGDFGKLGRGGSERCLI---PVEVEQLRGLQIC 807

Query: 123 AAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWG 182
                   + A+   G++W WGK    +LG G DI     P  VE L G+ ++ ++ G  
Sbjct: 808 KILCGAQFTVALTKTGTVWTWGKGDFYRLGHGTDI-HVRQPKLVEGLRGKHVIDIAVGAL 866

Query: 183 HALAQTEDGKLFGWGYSADGRIG 205
           H LA T+DG++F WG +  G++G
Sbjct: 867 HCLAVTQDGEVFSWGDNDHGQLG 889



 Score = 79.0 bits (193), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 91/328 (27%), Positives = 145/328 (44%), Gaps = 33/328 (10%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVT---SVSAGHYHSLAVTNNGAV 85
           + S G+ S G LG+      + G+   P  V GL   +    SV +G  H +A+T++G  
Sbjct: 612 LYSCGESSFGKLGI----GDITGNVTSPRLVTGLNQLIVTKVSVHSGGNHVMALTSDGLA 667

Query: 86  WAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGK 145
           ++WG     QLG G L S    + P  +E      V         S+AI ++  L+ WG 
Sbjct: 668 FSWGDGENGQLGHGNLMS---CSKPHLIEAFVGKIVTDISCGSAHSAAIVENKYLYTWGL 724

Query: 146 SKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGW--GHALAQTEDGKLFGWGYSADGR 203
              G+LG G + T  + P  V    G  +V+VS G      +  T+D K++ WG    G+
Sbjct: 725 GDFGRLGHGDEET-ILQPKFVTHFLGYNVVQVSCGSRDAQTVCITDDDKVWSWGDGDFGK 783

Query: 204 IGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGME----KEKYMPI----- 254
           +G  G      P++    R  +  + +  +    A  L   G      K  +  +     
Sbjct: 784 LGRGGSERCLIPVEVEQLRGLQICKILCGAQFTVA--LTKTGTVWTWGKGDFYRLGHGTD 841

Query: 255 --IWEPFLVEGV---EVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVD 309
             + +P LVEG+    V+DIA G  H L + ++G + S G N +GQLG  + D+   P  
Sbjct: 842 IHVRQPKLVEGLRGKHVIDIAVGALHCLAVTQDGEVFSWGDNDHGQLGTGETDVKKVPNL 901

Query: 310 I----NFHPVSISSGLGHSLAICEVRSS 333
           I    N     ++ G  HS+A  E+ +S
Sbjct: 902 ITGLHNHRIKYVACGSSHSIAWTEITTS 929



 Score = 72.4 bits (176), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 83/347 (23%), Positives = 143/347 (41%), Gaps = 39/347 (11%)

Query: 50  GGDAYEPTRVPGLPS-DVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWN 108
           G     PT    L S     ++ G   +  +TN G +++ G ++  +LG G +    T  
Sbjct: 576 GSKVKSPTLCDHLSSLQCKFIAGGSKSTFFITNKGKLYSCGESSFGKLGIGDITGNVT-- 633

Query: 109 DPKRVEGLDQVNV--CAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRV 166
            P+ V GL+Q+ V   +  + G    A+  DG  + WG  + GQLG G ++     P  +
Sbjct: 634 SPRLVTGLNQLIVTKVSVHSGGNHVMALTSDGLAFSWGDGENGQLGHG-NLMSCSKPHLI 692

Query: 167 EALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGN------LGKALESSPLDSNI 220
           EA  G+ +  +S G  H+ A  E+  L+ WG    GR+G+      L     +  L  N+
Sbjct: 693 EAFVGKIVTDISCGSAHSAAIVENKYLYTWGLGDFGRLGHGDEETILQPKFVTHFLGYNV 752

Query: 221 DRSSESDQEISSSTIEKAQKL----------VSEGMEKEKYMPIIWEPFLVEGVEVVDIA 270
            + S   ++  +  I    K+          +  G  +   +P+  E   + G+++  I 
Sbjct: 753 VQVSCGSRDAQTVCITDDDKVWSWGDGDFGKLGRGGSERCLIPVEVEQ--LRGLQICKIL 810

Query: 271 CGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDIN----FHPVSISSGLGHSLA 326
           CG   ++ L + G + + G   + +LG         P  +      H + I+ G  H LA
Sbjct: 811 CGAQFTVALTKTGTVWTWGKGDFYRLGHGTDIHVRQPKLVEGLRGKHVIDIAVGALHCLA 870

Query: 327 ICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPD--NVPLVVEGLEGE 371
           + +            + SWG N   QLG    D   VP ++ GL   
Sbjct: 871 VTQ---------DGEVFSWGDNDHGQLGTGETDVKKVPNLITGLHNH 908



 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 68/248 (27%), Positives = 98/248 (39%), Gaps = 57/248 (22%)

Query: 133  AIGDDGSL-WVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWG--HALAQTE 189
             I  DG+L +  G    GQLGLG   T    P  +E++    I K+S   G  H LA + 
Sbjct: 1488 CITTDGALVFATGYGNNGQLGLGYSET-VTSPRLLESIKHINIKKISVHSGGRHCLALSS 1546

Query: 190  DGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKE 249
            DG++F WG   DG++G+  +   S P                   IE             
Sbjct: 1547 DGEVFSWGEGEDGKLGHGNRQTSSQP-----------------KRIE------------- 1576

Query: 250  KYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVD 309
                         G  + +I  G  HS  +G NG L + G   YG+LG    D  + P  
Sbjct: 1577 ----------FFCGKIITNICAGGSHSAAIGLNGELYTWGKGRYGRLGHGDSDDQLKPKQ 1626

Query: 310  IN----FHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPD--NVPL 363
            +     F  + ++ G G +  +C     NV        SWG     +LGR G D   VP+
Sbjct: 1627 VEALQFFFVLDVACGSGDAQTLCITNDDNVW-------SWGDGDYGKLGRGGSDGCKVPM 1679

Query: 364  VVEGLEGE 371
            ++E L G+
Sbjct: 1680 IIEDLSGK 1687



 Score = 55.8 bits (133), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 69/161 (42%), Gaps = 18/161 (11%)

Query: 31   SFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSD-----VTSVSAGHYHSLAVTNNGAV 85
            S+GDG  G LG        GG   +  +VP +  D     +  V  G   S+A+T  G +
Sbjct: 1658 SWGDGDYGKLGR-------GGS--DGCKVPMIIEDLSGKGIVKVECGSQFSMALTKYGVL 1708

Query: 86   WAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGK 145
            + WG+ +  +LG G  E       P  V  L    V +     +      D+G ++ WG 
Sbjct: 1709 YTWGKGDYYRLGHGTEEHV---RRPMMVTALFNKIVTSISCGSLHCVVCTDEGEVYCWGD 1765

Query: 146  SKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALA 186
            +  GQLG G  I     P+    L  +KI ++S G  H +A
Sbjct: 1766 NDEGQLGDGTIIARQ-TPTLNTFLLNKKIDRISCGSAHTIA 1805



 Score = 45.8 bits (107), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 33/103 (32%), Positives = 47/103 (45%), Gaps = 15/103 (14%)

Query: 19   IFMRSASGTAVVSFGDGSQGALGLPTS---LTGVGGDAY-------EPTRVPGLPSD--- 65
            + +   SG  +V    GSQ ++ L       T   GD Y       E  R P + +    
Sbjct: 1679 MIIEDLSGKGIVKVECGSQFSMALTKYGVLYTWGKGDYYRLGHGTEEHVRRPMMVTALFN 1738

Query: 66   --VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRAT 106
              VTS+S G  H +  T+ G V+ WG N+E QLG G + +R T
Sbjct: 1739 KIVTSISCGSLHCVVCTDEGEVYCWGDNDEGQLGDGTIIARQT 1781


>gi|297686826|ref|XP_002820939.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC4 isoform 1
           [Pongo abelii]
          Length = 1057

 Score = 92.8 bits (229), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 64/245 (26%), Positives = 114/245 (46%), Gaps = 43/245 (17%)

Query: 55  EPTRVPGLPS-DVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRV 113
           +P +V  L + ++ +VS G  H+LA+ + G V+AWG +++ QLG   + S      P+ +
Sbjct: 74  KPEQVVALDAQNIVAVSCGEAHTLALNDKGQVYAWGLDSDGQLG--LVGSEECIRVPRNI 131

Query: 114 EGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEK 173
           + L  + +         S A+     ++ WG++K GQLGLG D  +   P  +++L G  
Sbjct: 132 KSLSDIQIVQVACGYCHSLALSKASEVFCWGQNKYGQLGLGTDCKKQTSPQLLKSLLGIP 191

Query: 174 IVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSS 233
            ++V+ G  H+   T  G +FGWG +  G++G          L+                
Sbjct: 192 FMQVAAGGAHSFVLTLSGAIFGWGRNKFGQLG----------LND--------------- 226

Query: 234 TIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVY 293
                        E ++Y+P + +   +   ++V I CG DH+  L + G + + G+  Y
Sbjct: 227 -------------ENDRYVPNLLKS--LRSQKIVYICCGEDHTAALTKEGGVFTFGAGGY 271

Query: 294 GQLGR 298
           GQLG 
Sbjct: 272 GQLGH 276



 Score = 77.8 bits (190), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 61/192 (31%), Positives = 99/192 (51%), Gaps = 16/192 (8%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVP-GLPS----DVTSVSAGHYHSLAVTNNG 83
           V ++G  S G LGL      VG +  E  RVP  + S     +  V+ G+ HSLA++   
Sbjct: 105 VYAWGLDSDGQLGL------VGSE--ECIRVPRNIKSLSDIQIVQVACGYCHSLALSKAS 156

Query: 84  AVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVW 143
            V+ WG+N   QLG G    + T   P+ ++ L  +      A G  S  +   G+++ W
Sbjct: 157 EVFCWGQNKYGQLGLGTDCKKQT--SPQLLKSLLGIPFMQVAAGGAHSFVLTLSGAIFGW 214

Query: 144 GKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGR 203
           G++K GQLGL  D  +  VP+ +++L  +KIV +  G  H  A T++G +F +G    G+
Sbjct: 215 GRNKFGQLGLN-DENDRYVPNLLKSLRSQKIVYICCGEDHTAALTKEGGVFTFGAGGYGQ 273

Query: 204 IGNLGKALESSP 215
           +G+   + E +P
Sbjct: 274 LGHNSTSHEINP 285



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 67/275 (24%), Positives = 112/275 (40%), Gaps = 57/275 (20%)

Query: 85  VWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWG 144
           +  WG  +  QLG G ++      +P++ +      V         +  + DDG+++  G
Sbjct: 1   MLCWGNASFGQLGLGGIDEEIVL-EPRKSDFFINKKVRDVGCGLRHTVFVLDDGTVYTCG 59

Query: 145 KSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRI 204
            +  GQLG  K   +   P +V AL  + IV VS G  H LA  + G+++ WG  +DG++
Sbjct: 60  CNDLGQLGHEKSRKK---PEQVVALDAQNIVAVSCGEAHTLALNDKGQVYAWGLDSDGQL 116

Query: 205 GNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGV 264
           G +G   E   +  NI   S+                                      +
Sbjct: 117 GLVGSE-ECIRVPRNIKSLSD--------------------------------------I 137

Query: 265 EVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLG-----REKQDMGMFPVDINFHPVSISS 319
           ++V +ACG+ HSL L +   +   G N YGQLG     +++    +    +    + +++
Sbjct: 138 QIVQVACGYCHSLALSKASEVFCWGQNKYGQLGLGTDCKKQTSPQLLKSLLGIPFMQVAA 197

Query: 320 GLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLG 354
           G  HS  +          GA  I  WG N+  QLG
Sbjct: 198 GGAHSFVL-------TLSGA--IFGWGRNKFGQLG 223


>gi|117558047|gb|AAI27373.1| LOC100036667 protein [Xenopus (Silurana) tropicalis]
          Length = 967

 Score = 92.8 bits (229), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 77/306 (25%), Positives = 135/306 (44%), Gaps = 57/306 (18%)

Query: 55  EPTRVPGLPSDV-TSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRV 113
           +P +V  L + +  +VS G  H+LA+ + G V++WG     Q+G    E       P+ +
Sbjct: 74  KPEQVGALDAQIIVAVSCGEAHTLALNDKGQVFSWGHAVYGQIGLSTAEEYI--RVPRNI 131

Query: 114 EGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEK 173
           + L  V +         S A+  D  ++ WG+++ GQLGLG +I +   P  +++L+G  
Sbjct: 132 KSLSDVQIVQVACGHHHSLALSKDSDIFSWGQNQYGQLGLGLEIKKECAPRHIKSLSGIP 191

Query: 174 IVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSS 233
              ++ G GH+ A T  G +FGWG +  G++G                 + E+D+ + + 
Sbjct: 192 FAHIAAGGGHSFALTISGAIFGWGRNKFGQLG----------------LTDETDRNVPA- 234

Query: 234 TIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVY 293
                   + + +  +K               ++ I CG DH+  L + G + + G+  Y
Sbjct: 235 --------LLKSLRSQK---------------IIHICCGEDHTAALTKEGGVFTFGAGGY 271

Query: 294 GQLGREKQDMGMFPVDINFHPV-----SISSGLGHSLAICEVRSSNVTGGARGIVSWGWN 348
           GQLG    +  + P  + F  +      I+ G  H+LA        V    R I S+G  
Sbjct: 272 GQLGHNSTNHEVNPRKV-FELMGSIVTQIACGRQHTLAF-------VPSSGR-IYSFGLG 322

Query: 349 RSSQLG 354
            + QLG
Sbjct: 323 GNGQLG 328



 Score = 84.3 bits (207), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 62/192 (32%), Positives = 102/192 (53%), Gaps = 16/192 (8%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVP-GLPS----DVTSVSAGHYHSLAVTNNG 83
           V S+G    G +GL T        A E  RVP  + S     +  V+ GH+HSLA++ + 
Sbjct: 105 VFSWGHAVYGQIGLST--------AEEYIRVPRNIKSLSDVQIVQVACGHHHSLALSKDS 156

Query: 84  AVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVW 143
            +++WG+N   QLG G LE +     P+ ++ L  +      A G  S A+   G+++ W
Sbjct: 157 DIFSWGQNQYGQLGLG-LEIKKECA-PRHIKSLSGIPFAHIAAGGGHSFALTISGAIFGW 214

Query: 144 GKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGR 203
           G++K GQLGL  D T+  VP+ +++L  +KI+ +  G  H  A T++G +F +G    G+
Sbjct: 215 GRNKFGQLGL-TDETDRNVPALLKSLRSQKIIHICCGEDHTAALTKEGGVFTFGAGGYGQ 273

Query: 204 IGNLGKALESSP 215
           +G+     E +P
Sbjct: 274 LGHNSTNHEVNP 285



 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 81/299 (27%), Positives = 122/299 (40%), Gaps = 71/299 (23%)

Query: 87  AWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKS 146
            WG  +  QLG G ++      +P+R +     NV         +  + DDG+++  G +
Sbjct: 3   CWGNTSFGQLGLGGIDEEVVL-EPRRCDFFINKNVRDVGCGSRHTVFVLDDGTVYTCGCN 61

Query: 147 KRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGN 206
             GQLG  K   +   P +V AL  + IV VS G  H LA  + G++F WG++  G+IG 
Sbjct: 62  DLGQLGHDKSRRK---PEQVGALDAQIIVAVSCGEAHTLALNDKGQVFSWGHAVYGQIG- 117

Query: 207 LGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEV 266
           L  A E   +  NI   S+                                      V++
Sbjct: 118 LSTAEEYIRVPRNIKSLSD--------------------------------------VQI 139

Query: 267 VDIACGFDHSLVLGRNGVLLSCGSNVYGQLG-----------REKQDMGMFPVDINFHPV 315
           V +ACG  HSL L ++  + S G N YGQLG           R  + +   P        
Sbjct: 140 VQVACGHHHSLALSKDSDIFSWGQNQYGQLGLGLEIKKECAPRHIKSLSGIPF------A 193

Query: 316 SISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPD--NVPLVVEGLEGES 372
            I++G GHS A+       ++G    I  WG N+  QLG       NVP +++ L  + 
Sbjct: 194 HIAAGGGHSFAL------TISG---AIFGWGRNKFGQLGLTDETDRNVPALLKSLRSQK 243


>gi|432863195|ref|XP_004070017.1| PREDICTED: secretion-regulating guanine nucleotide exchange
           factor-like [Oryzias latipes]
          Length = 397

 Score = 92.8 bits (229), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 89/312 (28%), Positives = 140/312 (44%), Gaps = 52/312 (16%)

Query: 26  GTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAV 85
           G  +++ G  + G LG+  ++T +        R       + SV+AG  HSLAV ++G V
Sbjct: 112 GGRLLACGSNAFGQLGVGETVTHIADPLLVEVR---FHEPIVSVAAGLRHSLAVNDSGCV 168

Query: 86  WAWGR-------NNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDG 138
           + WG        + E++ G   L  + +            V V A  A  V    + ++G
Sbjct: 169 YQWGNGLFSHVDDKEMRTGDKCLSQKKS------------VLVKAGSAHCV---CLTEEG 213

Query: 139 SLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGY 198
            L++WG +K  QLG  +    +  P R   L GEK+  V  GW H +AQTE G++F WG 
Sbjct: 214 ELFLWGSNKHEQLGTSESFLPSPTPLRRSLLNGEKVSNVWSGWSHIIAQTESGRVFTWG- 272

Query: 199 SADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEP 258
              G  G LG+           +  S++ +E+ +  I         G  + + +    E 
Sbjct: 273 --RGDYGQLGRP----------NSDSQTPEELLAGFI--------TGTSQSRAVCCPAEV 312

Query: 259 FLVEGVEVVDIACGFDHSL-VLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDI-NFHPVS 316
            ++ G     I+CG +H+L V+G    LLS G N +G  G   Q   + P  I N   V 
Sbjct: 313 HVLRG--ATQISCGSEHNLAVVGDR--LLSWGWNEHGMCGNGFQTNVLHPGLISNLRAVL 368

Query: 317 ISSGLGHSLAIC 328
           +  G GHS+A+C
Sbjct: 369 VGCGAGHSMAVC 380



 Score = 65.1 bits (157), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 80/324 (24%), Positives = 122/324 (37%), Gaps = 47/324 (14%)

Query: 69  VSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASG 128
           V  G  H+  +T  G V+  G+N++ QLG G     AT+             +C  F   
Sbjct: 48  VRGGGGHTAVITEGGEVFVCGQNHKGQLGIGHCADIATFQ------------ICPIFNQR 95

Query: 129 VVSSAIGDD--------GSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFG 180
           V   A G D        G L   G +  GQLG+G+ +T    P  VE    E IV V+ G
Sbjct: 96  VTDVACGWDFSLLLTEGGRLLACGSNAFGQLGVGETVTHIADPLLVEVRFHEPIVSVAAG 155

Query: 181 WGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQK 240
             H+LA  + G ++ WG      + +         L        ++         E+ + 
Sbjct: 156 LRHSLAVNDSGCVYQWGNGLFSHVDDKEMRTGDKCLSQKKSVLVKAGSAHCVCLTEEGEL 215

Query: 241 LV--SEGMEK----EKYM--PIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNV 292
            +  S   E+    E ++  P      L+ G +V ++  G+ H +    +G + + G   
Sbjct: 216 FLWGSNKHEQLGTSESFLPSPTPLRRSLLNGEKVSNVWSGWSHIIAQTESGRVFTWGRGD 275

Query: 293 YGQLGREKQDMGMFPVDINFHPVSISSGLGHSLAICEVRSSNVTGGARGI---------- 342
           YGQLGR   D    P ++        +G   S A+C     +V  GA  I          
Sbjct: 276 YGQLGRPNSD-SQTPEEL---LAGFITGTSQSRAVCCPAEVHVLRGATQISCGSEHNLAV 331

Query: 343 -----VSWGWNRSSQLGRMGPDNV 361
                +SWGWN     G     NV
Sbjct: 332 VGDRLLSWGWNEHGMCGNGFQTNV 355



 Score = 49.3 bits (116), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 63/291 (21%), Positives = 114/291 (39%), Gaps = 61/291 (20%)

Query: 87  AWGRNNEVQLGRGALESRATWNDPKRVEGLDQVN---VCAAFASGVVSSAIGDDGSLWVW 143
            WG N+  QLG+G  E +       R+ G+ ++    +      G  ++ I + G ++V 
Sbjct: 12  TWGANSYGQLGQGHAEDQLV----PRLSGVSELQTKVIRVVRGGGGHTAVITEGGEVFVC 67

Query: 144 GKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGR 203
           G++ +GQLG+G      I   ++  +  +++  V+ GW  +L  TE G+L   G +A G+
Sbjct: 68  GQNHKGQLGIGH--CADIATFQICPIFNQRVTDVACGWDFSLLLTEGGRLLACGSNAFGQ 125

Query: 204 IGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEG 263
           +G                        +  +    A  L+   +E   + PI         
Sbjct: 126 LG------------------------VGETVTHIADPLL---VEVRFHEPI--------- 149

Query: 264 VEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFHPVSISSGLGH 323
              V +A G  HSL +  +G +   G+ ++  +  ++   G   +      V + +G  H
Sbjct: 150 ---VSVAAGLRHSLAVNDSGCVYQWGNGLFSHVDDKEMRTGDKCLSQK-KSVLVKAGSAH 205

Query: 324 SLAICEVRSSNVTGGARGIVSWGWNRSSQLGR---MGPDNVPLVVEGLEGE 371
            + + E            +  WG N+  QLG      P   PL    L GE
Sbjct: 206 CVCLTEEGE---------LFLWGSNKHEQLGTSESFLPSPTPLRRSLLNGE 247


>gi|354477676|ref|XP_003501045.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC4 isoform 1
           [Cricetulus griseus]
          Length = 1049

 Score = 92.8 bits (229), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 64/245 (26%), Positives = 114/245 (46%), Gaps = 43/245 (17%)

Query: 55  EPTRVPGLPS-DVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRV 113
           +P +V  L + ++ +VS G  H+LA+ + G V++WG +++ QLG   L S      P+ +
Sbjct: 74  KPEQVVALDAQNIVAVSCGEAHTLALNDKGQVYSWGLDSDGQLG--LLGSEEYIRVPRNI 131

Query: 114 EGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEK 173
           + L  + +         S A+     ++ WG++K GQLGLG D  +   P  +++L G  
Sbjct: 132 KSLSDIQIVQVACGYYHSLALSKASEVFCWGQNKYGQLGLGIDCKKQTSPQLIKSLLGIP 191

Query: 174 IVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSS 233
            ++V+ G  H+   T  G +FGWG +  G++G          L+                
Sbjct: 192 FMQVAAGGAHSFVLTLSGAIFGWGRNKFGQLG----------LND--------------- 226

Query: 234 TIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVY 293
                        E ++Y+P + +   +   ++V I CG DH+  L + G + + G+  Y
Sbjct: 227 -------------ENDRYVPNLLKS--LRSQKIVYICCGEDHTAALTKEGGVFTFGAGGY 271

Query: 294 GQLGR 298
           GQLG 
Sbjct: 272 GQLGH 276



 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 60/190 (31%), Positives = 98/190 (51%), Gaps = 12/190 (6%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAY--EPTRVPGLPS-DVTSVSAGHYHSLAVTNNGAV 85
           V S+G  S G LGL      +G + Y   P  +  L    +  V+ G+YHSLA++    V
Sbjct: 105 VYSWGLDSDGQLGL------LGSEEYIRVPRNIKSLSDIQIVQVACGYYHSLALSKASEV 158

Query: 86  WAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGK 145
           + WG+N   QLG G    + T   P+ ++ L  +      A G  S  +   G+++ WG+
Sbjct: 159 FCWGQNKYGQLGLGIDCKKQT--SPQLIKSLLGIPFMQVAAGGAHSFVLTLSGAIFGWGR 216

Query: 146 SKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIG 205
           +K GQLGL  D  +  VP+ +++L  +KIV +  G  H  A T++G +F +G    G++G
Sbjct: 217 NKFGQLGLN-DENDRYVPNLLKSLRSQKIVYICCGEDHTAALTKEGGVFTFGAGGYGQLG 275

Query: 206 NLGKALESSP 215
           +   + E +P
Sbjct: 276 HNSTSHEINP 285



 Score = 72.0 bits (175), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 69/295 (23%), Positives = 121/295 (41%), Gaps = 59/295 (20%)

Query: 85  VWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWG 144
           +  WG  +  QLG G ++      +P++ +      V         +  + DDG+++  G
Sbjct: 1   MLCWGNASYGQLGLGGIDEEIVL-EPRKSDFFANKKVRDVGCGLRHTVFVLDDGTVYTCG 59

Query: 145 KSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRI 204
            +  GQLG  K   +   P +V AL  + IV VS G  H LA  + G+++ WG  +DG++
Sbjct: 60  CNDLGQLGHEKSRKK---PEQVVALDAQNIVAVSCGEAHTLALNDKGQVYSWGLDSDGQL 116

Query: 205 GNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGV 264
           G LG                                        E+Y+ +      +  +
Sbjct: 117 GLLG---------------------------------------SEEYIRVPRNIKSLSDI 137

Query: 265 EVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLG-----REKQDMGMFPVDINFHPVSISS 319
           ++V +ACG+ HSL L +   +   G N YGQLG     +++    +    +    + +++
Sbjct: 138 QIVQVACGYYHSLALSKASEVFCWGQNKYGQLGLGIDCKKQTSPQLIKSLLGIPFMQVAA 197

Query: 320 GLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPDN--VPLVVEGLEGES 372
           G  HS  +          GA  I  WG N+  QLG    ++  VP +++ L  + 
Sbjct: 198 GGAHSFVL-------TLSGA--IFGWGRNKFGQLGLNDENDRYVPNLLKSLRSQK 243


>gi|426364912|ref|XP_004049535.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC4 isoform 2
           [Gorilla gorilla gorilla]
          Length = 1057

 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 64/245 (26%), Positives = 114/245 (46%), Gaps = 43/245 (17%)

Query: 55  EPTRVPGLPS-DVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRV 113
           +P +V  L + ++ +VS G  H+LA+ + G V+AWG +++ QLG   + S      P+ +
Sbjct: 74  KPEQVVALDAQNIVAVSCGEAHTLALNDKGQVYAWGLDSDGQLG--LVGSEECIRVPRNI 131

Query: 114 EGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEK 173
           + L  + +         S A+     ++ WG++K GQLGLG D  +   P  +++L G  
Sbjct: 132 KSLSDIQIVQVACGYYHSLALSKASEVFCWGQNKYGQLGLGTDCKKQTSPQLLKSLLGIP 191

Query: 174 IVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSS 233
            ++V+ G  H+   T  G +FGWG +  G++G          L+                
Sbjct: 192 FMQVAAGGAHSFVLTLSGAIFGWGRNKFGQLG----------LND--------------- 226

Query: 234 TIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVY 293
                        E ++Y+P + +   +   ++V I CG DH+  L + G + + G+  Y
Sbjct: 227 -------------ENDRYVPNLLKS--LRSQKIVYICCGEDHTAALTKEGGVFTFGAGGY 271

Query: 294 GQLGR 298
           GQLG 
Sbjct: 272 GQLGH 276



 Score = 81.6 bits (200), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 62/192 (32%), Positives = 100/192 (52%), Gaps = 16/192 (8%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVP-GLPS----DVTSVSAGHYHSLAVTNNG 83
           V ++G  S G LGL      VG +  E  RVP  + S     +  V+ G+YHSLA++   
Sbjct: 105 VYAWGLDSDGQLGL------VGSE--ECIRVPRNIKSLSDIQIVQVACGYYHSLALSKAS 156

Query: 84  AVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVW 143
            V+ WG+N   QLG G    + T   P+ ++ L  +      A G  S  +   G+++ W
Sbjct: 157 EVFCWGQNKYGQLGLGTDCKKQT--SPQLLKSLLGIPFMQVAAGGAHSFVLTLSGAIFGW 214

Query: 144 GKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGR 203
           G++K GQLGL  D  +  VP+ +++L  +KIV +  G  H  A T++G +F +G    G+
Sbjct: 215 GRNKFGQLGLN-DENDRYVPNLLKSLRSQKIVYICCGEDHTAALTKEGGVFTFGAGGYGQ 273

Query: 204 IGNLGKALESSP 215
           +G+   + E +P
Sbjct: 274 LGHNSTSHEINP 285



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 66/275 (24%), Positives = 112/275 (40%), Gaps = 57/275 (20%)

Query: 85  VWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWG 144
           +  WG  +  QLG G ++      +P++ +      +         +  + DDG+++  G
Sbjct: 1   MLCWGNASFGQLGLGGIDEEIVL-EPRKSDFFINKRIRDVGCGLRHTVFVLDDGTVYTCG 59

Query: 145 KSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRI 204
            +  GQLG  K   +   P +V AL  + IV VS G  H LA  + G+++ WG  +DG++
Sbjct: 60  CNDLGQLGHEKSRKK---PEQVVALDAQNIVAVSCGEAHTLALNDKGQVYAWGLDSDGQL 116

Query: 205 GNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGV 264
           G +G   E   +  NI   S+                                      +
Sbjct: 117 GLVGSE-ECIRVPRNIKSLSD--------------------------------------I 137

Query: 265 EVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLG-----REKQDMGMFPVDINFHPVSISS 319
           ++V +ACG+ HSL L +   +   G N YGQLG     +++    +    +    + +++
Sbjct: 138 QIVQVACGYYHSLALSKASEVFCWGQNKYGQLGLGTDCKKQTSPQLLKSLLGIPFMQVAA 197

Query: 320 GLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLG 354
           G  HS  +          GA  I  WG N+  QLG
Sbjct: 198 GGAHSFVL-------TLSGA--IFGWGRNKFGQLG 223


>gi|37695550|gb|AAR00320.1| HECT E3 ubiquitin ligase [Homo sapiens]
          Length = 1024

 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 72/230 (31%), Positives = 113/230 (49%), Gaps = 24/230 (10%)

Query: 24  ASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVP-------GLPSDVTSVSAGHYHS 76
           + G  + ++G    G LG+        G  +  T  P       G+P  +  +SAG  HS
Sbjct: 154 SKGGELFAWGQNLHGQLGV--------GRKFPSTTTPQIVEHLAGVP--LAQISAGEAHS 203

Query: 77  LAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGD 136
            A++ +G +++WG+N   QLG G  ES+   +DP  +EGLD   V      G  S+ +  
Sbjct: 204 TALSMSGNIYSWGKNECGQLGLGHTESK---DDPSLIEGLDNQKVEFVACGGSHSALLTQ 260

Query: 137 DGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTED-GKLFG 195
           DG L+ +G  K GQLG      E + P  V  L G ++ +++ G  H LA   D GK+F 
Sbjct: 261 DGLLFTFGAGKHGQLGHNSTQNE-LRPCLVAELVGYRVTQIACGRWHTLAYVSDLGKVFS 319

Query: 196 WGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEG 245
           +G   DG++GN G   +  PL   +  SS  + ++ S T EK   +++ G
Sbjct: 320 FGSGKDGQLGNGGTRDQLMPLPVKV--SSSEELKLESHTSEKELIMIAGG 367



 Score = 81.6 bits (200), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 81/281 (28%), Positives = 121/281 (43%), Gaps = 47/281 (16%)

Query: 66  VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAF 125
           +  ++ G YHSLA++  G ++AWG+N   QLG G      T   P+ VE L  V +    
Sbjct: 140 IIQITCGDYHSLALSKGGELFAWGQNLHGQLGVGRKFPSTT--TPQIVEHLAGVPLAQIS 197

Query: 126 ASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHAL 185
           A    S+A+   G+++ WGK++ GQLGLG   ++   PS +E L  +K+  V+ G  H+ 
Sbjct: 198 AGEAHSTALSMSGNIYSWGKNECGQLGLGHTESKD-DPSLIEGLDNQKVEFVACGGSHSA 256

Query: 186 AQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEG 245
             T+DG LF +G    G++G+     E  P                         LV+E 
Sbjct: 257 LLTQDGLLFTFGAGKHGQLGHNSTQNELRPC------------------------LVAE- 291

Query: 246 MEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRN-GVLLSCGSNVYGQLGREKQDMG 304
                          + G  V  IACG  H+L    + G + S GS   GQLG       
Sbjct: 292 ---------------LVGYRVTQIACGRWHTLAYVSDLGKVFSFGSGKDGQLGNGGTRDQ 336

Query: 305 MFPVDINFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSW 345
           + P+ +    VS S  L       E     + GG + I+ W
Sbjct: 337 LMPLPVK---VSSSEELKLESHTSEKELIMIAGGNQSILLW 374



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 47/181 (25%), Positives = 90/181 (49%), Gaps = 20/181 (11%)

Query: 165 RVEALAGEK-IVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDR- 222
           R E++  EK I++++ G  H+LA ++ G+LF WG +  G++G +G+   S+     ++  
Sbjct: 130 RFESILQEKKIIQITCGDYHSLALSKGGELFAWGQNLHGQLG-VGRKFPSTTTPQIVEHL 188

Query: 223 -----SSESDQEISSSTIEKAQKLVSEGMEKEKYMPI-----IWEPFLVEGVE---VVDI 269
                +  S  E  S+ +  +  + S G  +   + +       +P L+EG++   V  +
Sbjct: 189 AGVPLAQISAGEAHSTALSMSGNIYSWGKNECGQLGLGHTESKDDPSLIEGLDNQKVEFV 248

Query: 270 ACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDIN----FHPVSISSGLGHSL 325
           ACG  HS +L ++G+L + G+  +GQLG       + P  +     +    I+ G  H+L
Sbjct: 249 ACGGSHSALLTQDGLLFTFGAGKHGQLGHNSTQNELRPCLVAELVGYRVTQIACGRWHTL 308

Query: 326 A 326
           A
Sbjct: 309 A 309



 Score = 45.8 bits (107), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 37/120 (30%), Positives = 61/120 (50%), Gaps = 16/120 (13%)

Query: 260 LVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFH----PV 315
           +++  +++ I CG  HSL L + G L + G N++GQLG  ++        I  H    P+
Sbjct: 134 ILQEKKIIQITCGDYHSLALSKGGELFAWGQNLHGQLGVGRKFPSTTTPQIVEHLAGVPL 193

Query: 316 S-ISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQ--LGRMGPDNVPLVVEGLEGES 372
           + IS+G  HS A+      +++G    I SWG N   Q  LG     + P ++EGL+ + 
Sbjct: 194 AQISAGEAHSTAL------SMSG---NIYSWGKNECGQLGLGHTESKDDPSLIEGLDNQK 244


>gi|148226064|ref|NP_001089405.1| protein RCC2 homolog [Xenopus laevis]
 gi|71152035|sp|Q52KW8.1|RCC2_XENLA RecName: Full=Protein RCC2 homolog
 gi|62739346|gb|AAH94159.1| MGC115292 protein [Xenopus laevis]
          Length = 513

 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 93/306 (30%), Positives = 146/306 (47%), Gaps = 41/306 (13%)

Query: 66  VTSVSAGHY--HSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLD-QVNVC 122
           V SV++G    HSL +T  G +W+WGRN++ QLG G ++     + PK +E L  +V V 
Sbjct: 141 VRSVASGSCAAHSLLITVEGKLWSWGRNDKGQLGHGDIKR---IDVPKLIESLKGEVFVH 197

Query: 123 AAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALA-GEKIVKVSFGW 181
           AA      + A+ ++GS++ +G++K GQLGLG + T+A VPS  + L  G+ I KV+ G 
Sbjct: 198 AACGRNH-TLALTENGSVYAFGENKMGQLGLG-NKTDA-VPSPAQILYNGQPITKVACGA 254

Query: 182 GHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKL 241
             ++     G L+ +G    G++G+            N D    +  +      E   + 
Sbjct: 255 EFSMIMDCKGNLYSFGCPEYGQLGH------------NSDGKYIARAQRIEYDCELIARR 302

Query: 242 VSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQ 301
           ++  +EK K   I+  P +V    V DIACG +HSL+L     + S G   YG+LG  +Q
Sbjct: 303 IAIFIEKTKDGQILPVPNVV----VRDIACGINHSLILDSQKRVFSWGFGGYGRLGHSEQ 358

Query: 302 DMGMFPVDINFH------PVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGR 355
              M P  +            I +G   S A+ E+          G+  WG   +S+   
Sbjct: 359 RDEMVPRLVKLFDFPGRGAAQIYAGATCSFAVSEM---------GGLFFWGATNTSRDST 409

Query: 356 MGPDNV 361
           M P  V
Sbjct: 410 MYPKAV 415


>gi|63025188|ref|NP_071362.1| probable E3 ubiquitin-protein ligase HERC4 isoform a [Homo sapiens]
 gi|74707832|sp|Q5GLZ8.1|HERC4_HUMAN RecName: Full=Probable E3 ubiquitin-protein ligase HERC4; AltName:
           Full=HECT domain and RCC1-like domain-containing protein
           4
 gi|37900475|gb|AAO65480.1| HECT and RCC1 containing protein 4 isoform 1 [Homo sapiens]
 gi|119574649|gb|EAW54264.1| hect domain and RLD 4, isoform CRA_d [Homo sapiens]
          Length = 1057

 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 64/245 (26%), Positives = 114/245 (46%), Gaps = 43/245 (17%)

Query: 55  EPTRVPGLPS-DVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRV 113
           +P +V  L + ++ +VS G  H+LA+ + G V+AWG +++ QLG   + S      P+ +
Sbjct: 74  KPEQVVALDAQNIVAVSCGEAHTLALNDKGQVYAWGLDSDGQLG--LVGSEECIRVPRNI 131

Query: 114 EGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEK 173
           + L  + +         S A+     ++ WG++K GQLGLG D  +   P  +++L G  
Sbjct: 132 KSLSDIQIVQVACGYYHSLALSKASEVFCWGQNKYGQLGLGTDCKKQTSPQLLKSLLGIP 191

Query: 174 IVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSS 233
            ++V+ G  H+   T  G +FGWG +  G++G          L+                
Sbjct: 192 FMQVAAGGAHSFVLTLSGAIFGWGRNKFGQLG----------LND--------------- 226

Query: 234 TIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVY 293
                        E ++Y+P + +   +   ++V I CG DH+  L + G + + G+  Y
Sbjct: 227 -------------ENDRYVPNLLKS--LRSQKIVYICCGEDHTAALTKEGGVFTFGAGGY 271

Query: 294 GQLGR 298
           GQLG 
Sbjct: 272 GQLGH 276



 Score = 81.6 bits (200), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 62/192 (32%), Positives = 100/192 (52%), Gaps = 16/192 (8%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVP-GLPS----DVTSVSAGHYHSLAVTNNG 83
           V ++G  S G LGL      VG +  E  RVP  + S     +  V+ G+YHSLA++   
Sbjct: 105 VYAWGLDSDGQLGL------VGSE--ECIRVPRNIKSLSDIQIVQVACGYYHSLALSKAS 156

Query: 84  AVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVW 143
            V+ WG+N   QLG G    + T   P+ ++ L  +      A G  S  +   G+++ W
Sbjct: 157 EVFCWGQNKYGQLGLGTDCKKQT--SPQLLKSLLGIPFMQVAAGGAHSFVLTLSGAIFGW 214

Query: 144 GKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGR 203
           G++K GQLGL  D  +  VP+ +++L  +KIV +  G  H  A T++G +F +G    G+
Sbjct: 215 GRNKFGQLGLN-DENDRYVPNLLKSLRSQKIVYICCGEDHTAALTKEGGVFTFGAGGYGQ 273

Query: 204 IGNLGKALESSP 215
           +G+   + E +P
Sbjct: 274 LGHNSTSHEINP 285



 Score = 70.5 bits (171), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 67/275 (24%), Positives = 112/275 (40%), Gaps = 57/275 (20%)

Query: 85  VWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWG 144
           +  WG  +  QLG G ++      +P++ +      V         +  + DDG+++  G
Sbjct: 1   MLCWGNASFGQLGLGGIDEEIVL-EPRKSDFFINKRVRDVGCGLRHTVFVLDDGTVYTCG 59

Query: 145 KSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRI 204
            +  GQLG  K   +   P +V AL  + IV VS G  H LA  + G+++ WG  +DG++
Sbjct: 60  CNDLGQLGHEKSRKK---PEQVVALDAQNIVAVSCGEAHTLALNDKGQVYAWGLDSDGQL 116

Query: 205 GNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGV 264
           G +G   E   +  NI   S+                                      +
Sbjct: 117 GLVGSE-ECIRVPRNIKSLSD--------------------------------------I 137

Query: 265 EVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLG-----REKQDMGMFPVDINFHPVSISS 319
           ++V +ACG+ HSL L +   +   G N YGQLG     +++    +    +    + +++
Sbjct: 138 QIVQVACGYYHSLALSKASEVFCWGQNKYGQLGLGTDCKKQTSPQLLKSLLGIPFMQVAA 197

Query: 320 GLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLG 354
           G  HS  +          GA  I  WG N+  QLG
Sbjct: 198 GGAHSFVL-------TLSGA--IFGWGRNKFGQLG 223


>gi|149043901|gb|EDL97352.1| rCG61079, isoform CRA_a [Rattus norvegicus]
          Length = 546

 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 76/316 (24%), Positives = 136/316 (43%), Gaps = 49/316 (15%)

Query: 55  EPTRVPGLPS-DVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRV 113
           +P +V  L + ++ +VS G  H+LA+ + G V+AWG +++ QLG     S      P+ +
Sbjct: 74  KPEQVVALDAQNIVAVSCGEAHTLALNDKGQVYAWGLDSDGQLGLQG--SEECIRVPRNI 131

Query: 114 EGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEK 173
           + L  + +         S A+     ++ WG++K GQLGLG +  +   P  +++L G  
Sbjct: 132 KSLSDIQIVQVACGYYHSLALSKASEVFCWGQNKYGQLGLGIECQKQTSPQLIKSLLGIP 191

Query: 174 IVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSS 233
            ++V+ G  H+   T  G +FGWG +  G++G          L+                
Sbjct: 192 FMQVAAGGAHSFVLTLSGAIFGWGRNKFGQLG----------LND--------------- 226

Query: 234 TIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVY 293
                        E ++Y+P + +   +   ++V I CG DH+  L + G + + G+  Y
Sbjct: 227 -------------ENDRYVPNLLKS--LRSQKIVYICCGEDHTAALTKEGGVFTFGAGGY 271

Query: 294 GQLGREKQDMGMFPVDINFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQL 353
           GQLG       + P  +      +   +   +A     +S     +  I S+G   + QL
Sbjct: 272 GQLGHNSTSHEINPRKV----FELMGSIVTQIACGRQHTSAFVPSSGRIYSFGLGGNGQL 327

Query: 354 GRMGPDN--VPLVVEG 367
           G     N   P  V+G
Sbjct: 328 GTGSTSNRKSPFTVKG 343



 Score = 81.3 bits (199), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 58/188 (30%), Positives = 96/188 (51%), Gaps = 8/188 (4%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPS-DVTSVSAGHYHSLAVTNNGAVWA 87
           V ++G  S G LGL  S   +      P  +  L    +  V+ G+YHSLA++    V+ 
Sbjct: 105 VYAWGLDSDGQLGLQGSEECI----RVPRNIKSLSDIQIVQVACGYYHSLALSKASEVFC 160

Query: 88  WGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSK 147
           WG+N   QLG G    + T   P+ ++ L  +      A G  S  +   G+++ WG++K
Sbjct: 161 WGQNKYGQLGLGIECQKQT--SPQLIKSLLGIPFMQVAAGGAHSFVLTLSGAIFGWGRNK 218

Query: 148 RGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNL 207
            GQLGL  D  +  VP+ +++L  +KIV +  G  H  A T++G +F +G    G++G+ 
Sbjct: 219 FGQLGL-NDENDRYVPNLLKSLRSQKIVYICCGEDHTAALTKEGGVFTFGAGGYGQLGHN 277

Query: 208 GKALESSP 215
             + E +P
Sbjct: 278 STSHEINP 285



 Score = 68.9 bits (167), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 70/294 (23%), Positives = 120/294 (40%), Gaps = 59/294 (20%)

Query: 85  VWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWG 144
           +  WG  +  QLG G ++      +P++ +      V         +  + DDG+++  G
Sbjct: 1   MLCWGNASYGQLGLGGIDEEIVL-EPRKSDFFVNKKVRDVGCGLRHTVFVLDDGTVYTCG 59

Query: 145 KSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRI 204
            +  GQLG  K   +   P +V AL  + IV VS G  H LA  + G+++ WG  +DG++
Sbjct: 60  CNDLGQLGHEKSRKK---PEQVVALDAQNIVAVSCGEAHTLALNDKGQVYAWGLDSDGQL 116

Query: 205 GNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGV 264
           G  G   E   +  NI   S+                                      +
Sbjct: 117 GLQGSE-ECIRVPRNIKSLSD--------------------------------------I 137

Query: 265 EVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLG-----REKQDMGMFPVDINFHPVSISS 319
           ++V +ACG+ HSL L +   +   G N YGQLG     +++    +    +    + +++
Sbjct: 138 QIVQVACGYYHSLALSKASEVFCWGQNKYGQLGLGIECQKQTSPQLIKSLLGIPFMQVAA 197

Query: 320 GLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPDN--VPLVVEGLEGE 371
           G  HS  +          GA  I  WG N+  QLG    ++  VP +++ L  +
Sbjct: 198 GGAHSFVL-------TLSGA--IFGWGRNKFGQLGLNDENDRYVPNLLKSLRSQ 242


>gi|301115610|ref|XP_002905534.1| regulator of chromosome condensation (RCC1)-like protein
           [Phytophthora infestans T30-4]
 gi|262110323|gb|EEY68375.1| regulator of chromosome condensation (RCC1)-like protein
           [Phytophthora infestans T30-4]
          Length = 456

 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 82/304 (26%), Positives = 132/304 (43%), Gaps = 59/304 (19%)

Query: 84  AVWAWGRNNEVQLGRGALES---RATWND--PKRVEGLDQVNVCAAFASGVVSSAIGDDG 138
           +V+ WG     QLG G++     R+ + +  PK  E L+   +         S+AI ++G
Sbjct: 70  SVYTWGNGTLGQLGHGSVIKSGIRSAYEELTPKLTEALEGKAITHVEFGASHSAAIDEEG 129

Query: 139 SLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGY 198
            L+VWG ++  +LGLG+      +P  VEAL G KIV VS G     A  EDGK++ WG+
Sbjct: 130 KLYVWGSNEYSKLGLGESSEMETLPREVEALKGIKIVDVSCGDYFTAAVDEDGKMYSWGW 189

Query: 199 SADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEP 258
                                             ST+ K    +     K++  P +   
Sbjct: 190 GG--------------------------------STM-KGAGGLGHAGGKDEPTPRLLTT 216

Query: 259 FLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFHP---- 314
            + +GV +  + CG  H++ L ++G + + G+  YG+LG  + D    P  I F      
Sbjct: 217 LVDQGVPIATVECGEFHTVALTKDGEIWAWGNGEYGRLGNGESDTCEVPEPIEFFSKDNV 276

Query: 315 VSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMG--------PDNVPLVVE 366
           VSI++G   S A+ +            + SWG N  +QLG  G         +++P++VE
Sbjct: 277 VSIAAGRDFSFALTDKGE---------LYSWGGNSQNQLGIGGGLAMDVYNIESIPVLVE 327

Query: 367 GLEG 370
              G
Sbjct: 328 AFNG 331



 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 48/142 (33%), Positives = 78/142 (54%), Gaps = 10/142 (7%)

Query: 61  GLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVN 120
           G+P  + +V  G +H++A+T +G +WAWG     +LG G  +   T   P+ +E   + N
Sbjct: 221 GVP--IATVECGEFHTVALTKDGEIWAWGNGEYGRLGNGESD---TCEVPEPIEFFSKDN 275

Query: 121 VCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAI-----VPSRVEALAGEKIV 175
           V +  A    S A+ D G L+ WG + + QLG+G  +   +     +P  VEA  G  + 
Sbjct: 276 VVSIAAGRDFSFALTDKGELYSWGGNSQNQLGIGGGLAMDVYNIESIPVLVEAFNGLLVK 335

Query: 176 KVSFGWGHALAQTEDGKLFGWG 197
           +++ G+ HA A TEDG+L+ WG
Sbjct: 336 QIAAGYDHAAAVTEDGRLYMWG 357



 Score = 74.7 bits (182), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 78/314 (24%), Positives = 136/314 (43%), Gaps = 41/314 (13%)

Query: 15  LTSRIFMRSAS---GTAVVSFGDGSQGALGLPTSLTGVGGDAYE---PTRVPGLPSD-VT 67
           L +R  +R+AS    ++V ++G+G+ G LG  + +      AYE   P     L    +T
Sbjct: 54  LATRSVLRTASYATQSSVYTWGNGTLGQLGHGSVIKSGIRSAYEELTPKLTEALEGKAIT 113

Query: 68  SVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFAS 127
            V  G  HS A+   G ++ WG N   +LG G  ES      P+ VE L  + +      
Sbjct: 114 HVEFGASHSAAIDEEGKLYVWGSNEYSKLGLG--ESSEMETLPREVEALKGIKIVDVSCG 171

Query: 128 GVVSSAIGDDGSLWVWG----KSKRGQLGLGKDITEAIVPSRVEALA--GEKIVKVSFGW 181
              ++A+ +DG ++ WG      K           +   P  +  L   G  I  V  G 
Sbjct: 172 DYFTAAVDEDGKMYSWGWGGSTMKGAGGLGHAGGKDEPTPRLLTTLVDQGVPIATVECGE 231

Query: 182 GHALAQTEDGKLFGWGYSADGRIGN-------LGKALESSPLDSNIDRSSESDQEISSST 234
            H +A T+DG+++ WG    GR+GN       + + +E    D+ +  S  + ++ S + 
Sbjct: 232 FHTVALTKDGEIWAWGNGEYGRLGNGESDTCEVPEPIEFFSKDNVV--SIAAGRDFSFAL 289

Query: 235 IEKAQKL-----------VSEGMEKEKY----MPIIWEPFLVEGVEVVDIACGFDHSLVL 279
            +K +             +  G+  + Y    +P++ E F   G+ V  IA G+DH+  +
Sbjct: 290 TDKGELYSWGGNSQNQLGIGGGLAMDVYNIESIPVLVEAF--NGLLVKQIAAGYDHAAAV 347

Query: 280 GRNGVLLSCGSNVY 293
             +G L   G+ ++
Sbjct: 348 TEDGRLYMWGAKIW 361


>gi|426364910|ref|XP_004049534.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC4 isoform 1
           [Gorilla gorilla gorilla]
          Length = 1049

 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 64/245 (26%), Positives = 114/245 (46%), Gaps = 43/245 (17%)

Query: 55  EPTRVPGLPS-DVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRV 113
           +P +V  L + ++ +VS G  H+LA+ + G V+AWG +++ QLG   + S      P+ +
Sbjct: 74  KPEQVVALDAQNIVAVSCGEAHTLALNDKGQVYAWGLDSDGQLG--LVGSEECIRVPRNI 131

Query: 114 EGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEK 173
           + L  + +         S A+     ++ WG++K GQLGLG D  +   P  +++L G  
Sbjct: 132 KSLSDIQIVQVACGYYHSLALSKASEVFCWGQNKYGQLGLGTDCKKQTSPQLLKSLLGIP 191

Query: 174 IVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSS 233
            ++V+ G  H+   T  G +FGWG +  G++G          L+                
Sbjct: 192 FMQVAAGGAHSFVLTLSGAIFGWGRNKFGQLG----------LND--------------- 226

Query: 234 TIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVY 293
                        E ++Y+P + +   +   ++V I CG DH+  L + G + + G+  Y
Sbjct: 227 -------------ENDRYVPNLLKS--LRSQKIVYICCGEDHTAALTKEGGVFTFGAGGY 271

Query: 294 GQLGR 298
           GQLG 
Sbjct: 272 GQLGH 276



 Score = 81.6 bits (200), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 62/192 (32%), Positives = 100/192 (52%), Gaps = 16/192 (8%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVP-GLPS----DVTSVSAGHYHSLAVTNNG 83
           V ++G  S G LGL      VG +  E  RVP  + S     +  V+ G+YHSLA++   
Sbjct: 105 VYAWGLDSDGQLGL------VGSE--ECIRVPRNIKSLSDIQIVQVACGYYHSLALSKAS 156

Query: 84  AVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVW 143
            V+ WG+N   QLG G    + T   P+ ++ L  +      A G  S  +   G+++ W
Sbjct: 157 EVFCWGQNKYGQLGLGTDCKKQT--SPQLLKSLLGIPFMQVAAGGAHSFVLTLSGAIFGW 214

Query: 144 GKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGR 203
           G++K GQLGL  D  +  VP+ +++L  +KIV +  G  H  A T++G +F +G    G+
Sbjct: 215 GRNKFGQLGLN-DENDRYVPNLLKSLRSQKIVYICCGEDHTAALTKEGGVFTFGAGGYGQ 273

Query: 204 IGNLGKALESSP 215
           +G+   + E +P
Sbjct: 274 LGHNSTSHEINP 285



 Score = 69.7 bits (169), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 66/273 (24%), Positives = 111/273 (40%), Gaps = 57/273 (20%)

Query: 87  AWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKS 146
            WG  +  QLG G ++      +P++ +      +         +  + DDG+++  G +
Sbjct: 3   CWGNASFGQLGLGGIDEEIVL-EPRKSDFFINKRIRDVGCGLRHTVFVLDDGTVYTCGCN 61

Query: 147 KRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGN 206
             GQLG  K   +   P +V AL  + IV VS G  H LA  + G+++ WG  +DG++G 
Sbjct: 62  DLGQLGHEKSRKK---PEQVVALDAQNIVAVSCGEAHTLALNDKGQVYAWGLDSDGQLGL 118

Query: 207 LGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEV 266
           +G   E   +  NI   S+                                      +++
Sbjct: 119 VGSE-ECIRVPRNIKSLSD--------------------------------------IQI 139

Query: 267 VDIACGFDHSLVLGRNGVLLSCGSNVYGQLG-----REKQDMGMFPVDINFHPVSISSGL 321
           V +ACG+ HSL L +   +   G N YGQLG     +++    +    +    + +++G 
Sbjct: 140 VQVACGYYHSLALSKASEVFCWGQNKYGQLGLGTDCKKQTSPQLLKSLLGIPFMQVAAGG 199

Query: 322 GHSLAICEVRSSNVTGGARGIVSWGWNRSSQLG 354
            HS  +          GA  I  WG N+  QLG
Sbjct: 200 AHSFVL-------TLSGA--IFGWGRNKFGQLG 223


>gi|115496664|ref|NP_001069489.1| secretion-regulating guanine nucleotide exchange factor [Bos
           taurus]
 gi|117940126|sp|Q3MHW0.1|SRGEF_BOVIN RecName: Full=Secretion-regulating guanine nucleotide exchange
           factor
 gi|75773727|gb|AAI04611.1| Secretion regulating guanine nucleotide exchange factor [Bos
           taurus]
 gi|296480129|tpg|DAA22244.1| TPA: secretion-regulating guanine nucleotide exchange factor [Bos
           taurus]
          Length = 464

 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 96/313 (30%), Positives = 139/313 (44%), Gaps = 43/313 (13%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAW 88
           V+S G  S G LG+P            P  +  L   V S++AG  H+LA T +G V+ W
Sbjct: 122 VLSCGSNSFGQLGVPHGPR----RCVIPQAIELLREKVVSIAAGLRHALAATASGTVFQW 177

Query: 89  GR---NNEVQLGRG-ALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWG 144
           G    ++  +L  G  L    T  +P  V GL+        A    S+++ D G L+VWG
Sbjct: 178 GTGLASSGRRLCPGQTLPLFLTAKEPSTVTGLENSQAVCVLAGSDHSASLTDAGELYVWG 237

Query: 145 KSKRGQLGLGKDITEAIVPSRVEA--LAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADG 202
            +K GQL         ++P R+EA     EKI  V  GW H +AQT  GK+F WG +   
Sbjct: 238 SNKHGQLA--SQAAFLLLPQRIEARCFQNEKIAAVWSGWTHLVAQTVTGKVFTWGRA--- 292

Query: 203 RIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVE 262
             G LG+ +E+           ES+++  S      QK     +           P L  
Sbjct: 293 DYGQLGRTVETR-------EGWESEKQDPSLPGSGPQKGTPSCL-----------PCLTG 334

Query: 263 GVEVVDIACGFDHSL-VLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDIN----FHPVSI 317
             E   I+CG +H+L V+G  GV  S G N +G  G   +     P  +     F  + +
Sbjct: 335 ATE---ISCGSEHNLAVIG--GVCHSWGWNEHGMCGDGTEADVWAPKPVPGLRFFLGLHV 389

Query: 318 SSGLGHSLAICEV 330
             G GHSLA+C++
Sbjct: 390 GCGAGHSLALCQL 402



 Score = 65.9 bits (159), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 87/315 (27%), Positives = 135/315 (42%), Gaps = 54/315 (17%)

Query: 74  YHSLAVTNNGAVWAWGRNNEVQLGRGALE---SRATWNDPKRVEGLDQVNVCAAFASGVV 130
           + S AV    A++AWG N+  QLG G  E   S    +D  +   + ++        G  
Sbjct: 6   HSSEAVPTAAALFAWGANSYGQLGLGHKEDVLSAQQLSDFCKSGCIKRIT-----GGGGH 60

Query: 131 SSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTED 190
           S+ + D+GSL+V G +K GQLGLG    E +  +  ++L G  I +V+ GW   +  TE+
Sbjct: 61  SAVVTDEGSLFVCGLNKDGQLGLGH-TEEVLYFTPCKSLLGCAIQQVACGWDFTIILTEN 119

Query: 191 GKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQE----------------ISSST 234
           G++   G ++ G++G     +   P    I ++ E  +E                 S + 
Sbjct: 120 GQVLSCGSNSFGQLG-----VPHGPRRCVIPQAIELLREKVVSIAAGLRHALAATASGTV 174

Query: 235 IEKAQKLVSEG--MEKEKYMPIIW---EPFLVEGVEVVDIAC---GFDHSLVLGRNGVLL 286
            +    L S G  +   + +P+     EP  V G+E     C   G DHS  L   G L 
Sbjct: 175 FQWGTGLASSGRRLCPGQTLPLFLTAKEPSTVTGLENSQAVCVLAGSDHSASLTDAGELY 234

Query: 287 SCGSNVYGQLGREKQDMGMFPVDI------NFHPVSISSGLGHSLAICEVRSSNVTGGAR 340
             GSN +GQL  +   + + P  I      N    ++ SG  H +A        VTG   
Sbjct: 235 VWGSNKHGQLASQAAFL-LLPQRIEARCFQNEKIAAVWSGWTHLVA------QTVTG--- 284

Query: 341 GIVSWGWNRSSQLGR 355
            + +WG     QLGR
Sbjct: 285 KVFTWGRADYGQLGR 299



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 63/246 (25%), Positives = 100/246 (40%), Gaps = 58/246 (23%)

Query: 131 SSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTED 190
           S A+    +L+ WG +  GQLGLG            +      I +++ G GH+   T++
Sbjct: 8   SEAVPTAAALFAWGANSYGQLGLGHKEDVLSAQQLSDFCKSGCIKRITGGGGHSAVVTDE 67

Query: 191 GKLFGWGYSADGRIG--NLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEK 248
           G LF  G + DG++G  +  + L  +P  S +                            
Sbjct: 68  GSLFVCGLNKDGQLGLGHTEEVLYFTPCKSLL---------------------------- 99

Query: 249 EKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLG-REKQDMGMFP 307
                         G  +  +ACG+D +++L  NG +LSCGSN +GQLG        + P
Sbjct: 100 --------------GCAIQQVACGWDFTIILTENGQVLSCGSNSFGQLGVPHGPRRCVIP 145

Query: 308 VDINF---HPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGP-DNVPL 363
             I       VSI++GL H+LA      +  +G    +  WG   +S   R+ P   +PL
Sbjct: 146 QAIELLREKVVSIAAGLRHALA------ATASG---TVFQWGTGLASSGRRLCPGQTLPL 196

Query: 364 VVEGLE 369
            +   E
Sbjct: 197 FLTAKE 202



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 84/334 (25%), Positives = 130/334 (38%), Gaps = 64/334 (19%)

Query: 66  VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAF 125
           +  ++ G  HS  VT+ G+++  G N + QLG G  E    +   K + G     V   +
Sbjct: 51  IKRITGGGGHSAVVTDEGSLFVCGLNKDGQLGLGHTEEVLYFTPCKSLLGCAIQQVACGW 110

Query: 126 ASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHAL 185
              ++   + ++G +   G +  GQLG+       ++P  +E L  EK+V ++ G  HAL
Sbjct: 111 DFTII---LTENGQVLSCGSNSFGQLGVPHGPRRCVIPQAIELLR-EKVVSIAAGLRHAL 166

Query: 186 AQTEDGKLFGWG--YSADGRIGNLGKALESSPLDSNIDRSS-----ESDQEIS------- 231
           A T  G +F WG   ++ GR    G+ L   PL       S     E+ Q +        
Sbjct: 167 AATASGTVFQWGTGLASSGRRLCPGQTL---PLFLTAKEPSTVTGLENSQAVCVLAGSDH 223

Query: 232 SSTIEKAQKLVSEGMEKEK---------YMPIIWEPFLVEGVEVVDIACGFDHSLVLGRN 282
           S+++  A +L   G  K            +P   E    +  ++  +  G+ H +     
Sbjct: 224 SASLTDAGELYVWGSNKHGQLASQAAFLLLPQRIEARCFQNEKIAAVWSGWTHLVAQTVT 283

Query: 283 GVLLSCGSNVYGQLGR----------EKQDMGM------------FPVDINFHPVSISSG 320
           G + + G   YGQLGR          EKQD  +             P         IS G
Sbjct: 284 GKVFTWGRADYGQLGRTVETREGWESEKQDPSLPGSGPQKGTPSCLPCLTG--ATEISCG 341

Query: 321 LGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLG 354
             H+LA        V GG     SWGWN     G
Sbjct: 342 SEHNLA--------VIGGV--CHSWGWNEHGMCG 365


>gi|344247622|gb|EGW03726.1| putative E3 ubiquitin-protein ligase HERC4 [Cricetulus griseus]
          Length = 835

 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 64/245 (26%), Positives = 114/245 (46%), Gaps = 43/245 (17%)

Query: 55  EPTRVPGLPS-DVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRV 113
           +P +V  L + ++ +VS G  H+LA+ + G V++WG +++ QLG   L S      P+ +
Sbjct: 74  KPEQVVALDAQNIVAVSCGEAHTLALNDKGQVYSWGLDSDGQLG--LLGSEEYIRVPRNI 131

Query: 114 EGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEK 173
           + L  + +         S A+     ++ WG++K GQLGLG D  +   P  +++L G  
Sbjct: 132 KSLSDIQIVQVACGYYHSLALSKASEVFCWGQNKYGQLGLGIDCKKQTSPQLIKSLLGIP 191

Query: 174 IVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSS 233
            ++V+ G  H+   T  G +FGWG +  G++G          L+                
Sbjct: 192 FMQVAAGGAHSFVLTLSGAIFGWGRNKFGQLG----------LND--------------- 226

Query: 234 TIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVY 293
                        E ++Y+P + +   +   ++V I CG DH+  L + G + + G+  Y
Sbjct: 227 -------------ENDRYVPNLLKS--LRSQKIVYICCGEDHTAALTKEGGVFTFGAGGY 271

Query: 294 GQLGR 298
           GQLG 
Sbjct: 272 GQLGH 276



 Score = 83.6 bits (205), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 60/190 (31%), Positives = 98/190 (51%), Gaps = 12/190 (6%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAY--EPTRVPGLPS-DVTSVSAGHYHSLAVTNNGAV 85
           V S+G  S G LGL      +G + Y   P  +  L    +  V+ G+YHSLA++    V
Sbjct: 105 VYSWGLDSDGQLGL------LGSEEYIRVPRNIKSLSDIQIVQVACGYYHSLALSKASEV 158

Query: 86  WAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGK 145
           + WG+N   QLG G    + T   P+ ++ L  +      A G  S  +   G+++ WG+
Sbjct: 159 FCWGQNKYGQLGLGIDCKKQT--SPQLIKSLLGIPFMQVAAGGAHSFVLTLSGAIFGWGR 216

Query: 146 SKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIG 205
           +K GQLGL  D  +  VP+ +++L  +KIV +  G  H  A T++G +F +G    G++G
Sbjct: 217 NKFGQLGLN-DENDRYVPNLLKSLRSQKIVYICCGEDHTAALTKEGGVFTFGAGGYGQLG 275

Query: 206 NLGKALESSP 215
           +   + E +P
Sbjct: 276 HNSTSHEINP 285



 Score = 72.0 bits (175), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 66/273 (24%), Positives = 111/273 (40%), Gaps = 57/273 (20%)

Query: 87  AWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKS 146
            WG  +  QLG G ++      +P++ +      V         +  + DDG+++  G +
Sbjct: 3   CWGNASYGQLGLGGIDEEIVL-EPRKSDFFANKKVRDVGCGLRHTVFVLDDGTVYTCGCN 61

Query: 147 KRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGN 206
             GQLG  K   +   P +V AL  + IV VS G  H LA  + G+++ WG  +DG++G 
Sbjct: 62  DLGQLGHEKSRKK---PEQVVALDAQNIVAVSCGEAHTLALNDKGQVYSWGLDSDGQLGL 118

Query: 207 LGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEV 266
           LG                                        E+Y+ +      +  +++
Sbjct: 119 LG---------------------------------------SEEYIRVPRNIKSLSDIQI 139

Query: 267 VDIACGFDHSLVLGRNGVLLSCGSNVYGQLG-----REKQDMGMFPVDINFHPVSISSGL 321
           V +ACG+ HSL L +   +   G N YGQLG     +++    +    +    + +++G 
Sbjct: 140 VQVACGYYHSLALSKASEVFCWGQNKYGQLGLGIDCKKQTSPQLIKSLLGIPFMQVAAGG 199

Query: 322 GHSLAICEVRSSNVTGGARGIVSWGWNRSSQLG 354
            HS  +          GA  I  WG N+  QLG
Sbjct: 200 AHSFVL-------TLSGA--IFGWGRNKFGQLG 223



 Score = 45.1 bits (105), Expect = 0.057,   Method: Compositional matrix adjust.
 Identities = 31/96 (32%), Positives = 50/96 (52%), Gaps = 13/96 (13%)

Query: 265 EVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREK---QDMGMFPVDINFHPVSISSGL 321
           +V D+ CG  H++ +  +G + +CG N  GQLG EK   +   +  +D   + V++S G 
Sbjct: 35  KVRDVGCGLRHTVFVLDDGTVYTCGCNDLGQLGHEKSRKKPEQVVALDAQ-NIVAVSCGE 93

Query: 322 GHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMG 357
            H+LA+      N  G    + SWG +   QLG +G
Sbjct: 94  AHTLAL------NDKGQ---VYSWGLDSDGQLGLLG 120


>gi|37620181|ref|NP_056416.2| probable E3 ubiquitin-protein ligase HERC4 isoform b [Homo sapiens]
 gi|24659293|gb|AAH39600.1| Hect domain and RLD 4 [Homo sapiens]
 gi|119574646|gb|EAW54261.1| hect domain and RLD 4, isoform CRA_b [Homo sapiens]
 gi|119574648|gb|EAW54263.1| hect domain and RLD 4, isoform CRA_b [Homo sapiens]
 gi|325463745|gb|ADZ15643.1| hect domain and RLD 4 [synthetic construct]
          Length = 1049

 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 64/245 (26%), Positives = 114/245 (46%), Gaps = 43/245 (17%)

Query: 55  EPTRVPGLPS-DVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRV 113
           +P +V  L + ++ +VS G  H+LA+ + G V+AWG +++ QLG   + S      P+ +
Sbjct: 74  KPEQVVALDAQNIVAVSCGEAHTLALNDKGQVYAWGLDSDGQLG--LVGSEECIRVPRNI 131

Query: 114 EGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEK 173
           + L  + +         S A+     ++ WG++K GQLGLG D  +   P  +++L G  
Sbjct: 132 KSLSDIQIVQVACGYYHSLALSKASEVFCWGQNKYGQLGLGTDCKKQTSPQLLKSLLGIP 191

Query: 174 IVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSS 233
            ++V+ G  H+   T  G +FGWG +  G++G          L+                
Sbjct: 192 FMQVAAGGAHSFVLTLSGAIFGWGRNKFGQLG----------LND--------------- 226

Query: 234 TIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVY 293
                        E ++Y+P + +   +   ++V I CG DH+  L + G + + G+  Y
Sbjct: 227 -------------ENDRYVPNLLKS--LRSQKIVYICCGEDHTAALTKEGGVFTFGAGGY 271

Query: 294 GQLGR 298
           GQLG 
Sbjct: 272 GQLGH 276



 Score = 81.6 bits (200), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 62/192 (32%), Positives = 100/192 (52%), Gaps = 16/192 (8%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVP-GLPS----DVTSVSAGHYHSLAVTNNG 83
           V ++G  S G LGL      VG +  E  RVP  + S     +  V+ G+YHSLA++   
Sbjct: 105 VYAWGLDSDGQLGL------VGSE--ECIRVPRNIKSLSDIQIVQVACGYYHSLALSKAS 156

Query: 84  AVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVW 143
            V+ WG+N   QLG G    + T   P+ ++ L  +      A G  S  +   G+++ W
Sbjct: 157 EVFCWGQNKYGQLGLGTDCKKQT--SPQLLKSLLGIPFMQVAAGGAHSFVLTLSGAIFGW 214

Query: 144 GKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGR 203
           G++K GQLGL  D  +  VP+ +++L  +KIV +  G  H  A T++G +F +G    G+
Sbjct: 215 GRNKFGQLGLN-DENDRYVPNLLKSLRSQKIVYICCGEDHTAALTKEGGVFTFGAGGYGQ 273

Query: 204 IGNLGKALESSP 215
           +G+   + E +P
Sbjct: 274 LGHNSTSHEINP 285



 Score = 70.5 bits (171), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 67/275 (24%), Positives = 112/275 (40%), Gaps = 57/275 (20%)

Query: 85  VWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWG 144
           +  WG  +  QLG G ++      +P++ +      V         +  + DDG+++  G
Sbjct: 1   MLCWGNASFGQLGLGGIDEEIVL-EPRKSDFFINKRVRDVGCGLRHTVFVLDDGTVYTCG 59

Query: 145 KSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRI 204
            +  GQLG  K   +   P +V AL  + IV VS G  H LA  + G+++ WG  +DG++
Sbjct: 60  CNDLGQLGHEKSRKK---PEQVVALDAQNIVAVSCGEAHTLALNDKGQVYAWGLDSDGQL 116

Query: 205 GNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGV 264
           G +G   E   +  NI   S+                                      +
Sbjct: 117 GLVGSE-ECIRVPRNIKSLSD--------------------------------------I 137

Query: 265 EVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLG-----REKQDMGMFPVDINFHPVSISS 319
           ++V +ACG+ HSL L +   +   G N YGQLG     +++    +    +    + +++
Sbjct: 138 QIVQVACGYYHSLALSKASEVFCWGQNKYGQLGLGTDCKKQTSPQLLKSLLGIPFMQVAA 197

Query: 320 GLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLG 354
           G  HS  +          GA  I  WG N+  QLG
Sbjct: 198 GGAHSFVL-------TLSGA--IFGWGRNKFGQLG 223


>gi|158300884|ref|XP_552411.3| AGAP011823-PA [Anopheles gambiae str. PEST]
 gi|157013375|gb|EAL38855.3| AGAP011823-PA [Anopheles gambiae str. PEST]
          Length = 4947

 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 78/266 (29%), Positives = 120/266 (45%), Gaps = 25/266 (9%)

Query: 52  DAYEPTRVPGLPSDVTSVSAGH--YHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWND 109
           D Y P +V GL   +  ++A     H LA+ ++G V++WG  +  +LG G   ++     
Sbjct: 596 DNY-PAQVKGLECTIVQLAAHCEGRHVLALASSGDVYSWGSGDGGRLGHGDTSAKEL--- 651

Query: 110 PKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEAL 169
           P R+  L    V   F     S+AI   G L+ WG+   G+LG G    +  VP+ V AL
Sbjct: 652 PTRIAALADRQVTGVFCGSSYSAAITASGELYTWGRGTYGRLGHGNS-EDKYVPTLVTAL 710

Query: 170 AGEKIVKVSFGWG--HALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESD 227
              ++V V+ G G  H+L  TE G  F WG    G++GN      S P+  ++ ++S   
Sbjct: 711 KAHRVVHVALGCGDAHSLCVTEAGLAFAWGDGDFGKLGNESCVGTSVPVQVDLPQASCVV 770

Query: 228 QEISSSTIEKAQKLVSEGME--------------KEKYMPIIWEPFLVEGVEVVDIACGF 273
           +  S S    A  L  EG                  ++ P+      +EG ++VD+A G 
Sbjct: 771 KVFSGSQFSVA--LTREGTVYTWGKGHGGRLGHGNSEHSPVPKMVQALEGKKIVDLAVGL 828

Query: 274 DHSLVLGRNGVLLSCGSNVYGQLGRE 299
            H L L  +G L   G N + Q+  E
Sbjct: 829 AHCLALTASGELYGWGRNDFQQICPE 854



 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 98/364 (26%), Positives = 151/364 (41%), Gaps = 72/364 (19%)

Query: 19   IFMRSASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVT---SVSAGHYH 75
            +F+ S  G  + + G+G+ G LGL     G   +   P +VP L   V    +V +G  H
Sbjct: 3073 LFIVSQDG-KLYACGEGTNGRLGL-----GHNNNVPTPKQVPILSQYVVKKVAVHSGGKH 3126

Query: 76   SLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIG 135
            ++A+T +G V++WG   + +LG G   +R T   PK +E L    +         S+AI 
Sbjct: 3127 AMALTLDGKVFSWGEGEDGKLGHG---NRLTLEKPKLIETLRTKRIRDIACGSSHSAAIT 3183

Query: 136  DDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGW--GHALAQTEDGKL 193
              G L+ WG  + G+LG G + T+ + P  V AL   ++V+V+ G      L  TEDG +
Sbjct: 3184 SSGELYTWGLGEYGRLGHGDNCTQ-LKPKLVTALQDHRVVQVACGSRDAQTLCLTEDGLV 3242

Query: 194  FGWGYSADGRIGNLGK-ALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYM 252
            F WG   DG  G LG+   E   +   +DR                              
Sbjct: 3243 FSWG---DGDFGKLGRGGSEGCSIPHQVDR------------------------------ 3269

Query: 253  PIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDIN- 311
                    + GV V+ I CG   SL L + G + + G   Y +LG         P  I  
Sbjct: 3270 --------LNGVGVMQIECGAQFSLALTKAGEVWTWGKGDYYRLGHGTDQHVRKPTPIQG 3321

Query: 312  ---FHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGP--DNVPLVVE 366
                  + ++ G  H LA+ +         +  + +WG N   Q G      +  P +V 
Sbjct: 3322 LRGKKVIHVAVGALHCLAVTD---------SGQVYAWGDNDHGQQGSGNTIVNKKPSLVL 3372

Query: 367  GLEG 370
            GL+G
Sbjct: 3373 GLDG 3376



 Score = 81.3 bits (199), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 62/178 (34%), Positives = 90/178 (50%), Gaps = 13/178 (7%)

Query: 23  SASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVT---SVSAGHYHSLAV 79
           +ASG  + ++G G+ G LG      G   D Y PT V  L +      ++  G  HSL V
Sbjct: 677 TASG-ELYTWGRGTYGRLG-----HGNSEDKYVPTLVTALKAHRVVHVALGCGDAHSLCV 730

Query: 80  TNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGS 139
           T  G  +AWG  +  +LG    ES    + P +V+      V   F+    S A+  +G+
Sbjct: 731 TEAGLAFAWGDGDFGKLGN---ESCVGTSVPVQVDLPQASCVVKVFSGSQFSVALTREGT 787

Query: 140 LWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWG 197
           ++ WGK   G+LG G     + VP  V+AL G+KIV ++ G  H LA T  G+L+GWG
Sbjct: 788 VYTWGKGHGGRLGHGNS-EHSPVPKMVQALEGKKIVDLAVGLAHCLALTASGELYGWG 844



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 82/312 (26%), Positives = 138/312 (44%), Gaps = 61/312 (19%)

Query: 68   SVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFAS 127
            +V++G  H LA++++G V++WG   + +LG G   +R +++ PK +E L  + V      
Sbjct: 4180 AVNSGGKHCLALSSDGEVFSWGEGEDGKLGHG---NRDSYDRPKLIESLSGIGVVDIACG 4236

Query: 128  GVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHA--L 185
               S+ I   G +  WGK + G+LG G D  + + P  VEAL G + + ++ G G A  L
Sbjct: 4237 SAHSACITIQGHVLTWGKGRYGRLGHG-DSEDQLQPKLVEALLGYRAIDIACGSGDAQTL 4295

Query: 186  AQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEG 245
              T+D  ++ WG   DG  G LG+                                 S+G
Sbjct: 4296 CITDDDNVWSWG---DGDYGKLGRG-------------------------------GSDG 4321

Query: 246  MEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGM 305
             +    +P+  E   + G+ V  + CG   S+ L R+G + + G   Y +LG    D   
Sbjct: 4322 CK----VPMKIES--LAGLGVTKVECGSQFSVALTRSGSVYTWGKGDYHRLGHGNTDHVR 4375

Query: 306  FPVDINF----HPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQL--GRMGPD 359
             P  +        +SI++G  H +A  +         A  + +WG N   QL  G +   
Sbjct: 4376 RPKKVAALQGKKIISIATGSLHCVACSD---------AGEVFTWGDNDEGQLGDGTVSAI 4426

Query: 360  NVPLVVEGLEGE 371
              P +V+ L+G+
Sbjct: 4427 QRPRLVQSLQGK 4438



 Score = 72.8 bits (177), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 53/182 (29%), Positives = 91/182 (50%), Gaps = 14/182 (7%)

Query: 29   VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGL----PSDVTSVSAGHYHSLAVTNNGA 84
            V+++G G  G LG      G   D  +P  V  L      D+ +  +G   +L +T++  
Sbjct: 4249 VLTWGKGRYGRLG-----HGDSEDQLQPKLVEALLGYRAIDI-ACGSGDAQTLCITDDDN 4302

Query: 85   VWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWG 144
            VW+WG  +  +LGRG  +       P ++E L  + V         S A+   GS++ WG
Sbjct: 4303 VWSWGDGDYGKLGRGGSDGCKV---PMKIESLAGLGVTKVECGSQFSVALTRSGSVYTWG 4359

Query: 145  KSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRI 204
            K    +LG G +      P +V AL G+KI+ ++ G  H +A ++ G++F WG + +G++
Sbjct: 4360 KGDYHRLGHG-NTDHVRRPKKVAALQGKKIISIATGSLHCVACSDAGEVFTWGDNDEGQL 4418

Query: 205  GN 206
            G+
Sbjct: 4419 GD 4420



 Score = 68.2 bits (165), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 70/271 (25%), Positives = 111/271 (40%), Gaps = 55/271 (20%)

Query: 108 NDPKRVEGLDQVNV-CAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRV 166
           N P +V+GL+   V  AA   G    A+   G ++ WG    G+LG G D +   +P+R+
Sbjct: 597 NYPAQVKGLECTIVQLAAHCEGRHVLALASSGDVYSWGSGDGGRLGHG-DTSAKELPTRI 655

Query: 167 EALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSES 226
            ALA  ++  V  G  ++ A T  G+L+ WG    GR+G+                    
Sbjct: 656 AALADRQVTGVFCGSSYSAAITASGELYTWGRGTYGRLGH-------------------- 695

Query: 227 DQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLL 286
                             G  ++KY+P +        V  V + CG  HSL +   G+  
Sbjct: 696 ------------------GNSEDKYVPTLVTALKAHRVVHVALGCGDAHSLCVTEAGLAF 737

Query: 287 SCGSNVYGQLGREKQDMGMFPVDINFHP----VSISSGLGHSLAICEVRSSNVTGGARGI 342
           + G   +G+LG E       PV ++       V + SG   S+A+   R   V       
Sbjct: 738 AWGDGDFGKLGNESCVGTSVPVQVDLPQASCVVKVFSGSQFSVAL--TREGTV------- 788

Query: 343 VSWGWNRSSQLGRMGPDN--VPLVVEGLEGE 371
            +WG     +LG    ++  VP +V+ LEG+
Sbjct: 789 YTWGKGHGGRLGHGNSEHSPVPKMVQALEGK 819



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 82/307 (26%), Positives = 136/307 (44%), Gaps = 31/307 (10%)

Query: 85   VWAWGRNNEVQLG--RGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWV 142
            V  WG N++ QLG  +G+     T++    +  L  +++     S  +   +  DG L+ 
Sbjct: 3030 VLVWGLNDKEQLGGLKGSKVKLPTYS--SVLSQLKPIHIAGGSKSLFI---VSQDGKLYA 3084

Query: 143  WGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWG--HALAQTEDGKLFGWGYSA 200
             G+   G+LGLG +      P +V  L+   + KV+   G  HA+A T DGK+F WG   
Sbjct: 3085 CGEGTNGRLGLGHN-NNVPTPKQVPILSQYVVKKVAVHSGGKHAMALTLDGKVFSWGEGE 3143

Query: 201  DGRIGNLGK-ALESSPLDSNIDRSSESDQEISSS---TIEKAQKLVSEGMEKEKYM---- 252
            DG++G+  +  LE   L   +      D    SS    I  + +L + G+ +   +    
Sbjct: 3144 DGKLGHGNRLTLEKPKLIETLRTKRIRDIACGSSHSAAITSSGELYTWGLGEYGRLGHGD 3203

Query: 253  -PIIWEPFLVEGVE---VVDIACGFD--HSLVLGRNGVLLSCGSNVYGQLGREKQDMGMF 306
                 +P LV  ++   VV +ACG     +L L  +G++ S G   +G+LGR   +    
Sbjct: 3204 NCTQLKPKLVTALQDHRVVQVACGSRDAQTLCLTEDGLVFSWGDGDFGKLGRGGSEGCSI 3263

Query: 307  PVDINFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPDNV--PLV 364
            P     H V   +G+G     C  + S     A  + +WG     +LG     +V  P  
Sbjct: 3264 P-----HQVDRLNGVGVMQIECGAQFSLALTKAGEVWTWGKGDYYRLGHGTDQHVRKPTP 3318

Query: 365  VEGLEGE 371
            ++GL G+
Sbjct: 3319 IQGLRGK 3325



 Score = 65.5 bits (158), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 83/298 (27%), Positives = 123/298 (41%), Gaps = 67/298 (22%)

Query: 85   VWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWG 144
            ++ WG N+  QLG G   SR    +P   E L  +             A+  DG L+  G
Sbjct: 4091 IFGWGHNHRGQLG-GLDGSRI--KNPTPCEALSLLRPIQIAGGEQTLYAVTPDGKLYATG 4147

Query: 145  KSKRGQLGLGKDITEAIV-PSRVEALAGEKIVKVSFGWG--HALAQTEDGKLFGWGYSAD 201
                G+LG+G   T+++  P+ VE+L    I KV+   G  H LA + DG++F WG   D
Sbjct: 4148 YGAGGRLGVGG--TDSVTTPTLVESLQHVMIKKVAVNSGGKHCLALSSDGEVFSWGEGED 4205

Query: 202  GRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLV 261
            G++G+  +         + DR                                   P L+
Sbjct: 4206 GKLGHGNR--------DSYDR-----------------------------------PKLI 4222

Query: 262  E---GVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDIN----FHP 314
            E   G+ VVDIACG  HS  +   G +L+ G   YG+LG    +  + P  +     +  
Sbjct: 4223 ESLSGIGVVDIACGSAHSACITIQGHVLTWGKGRYGRLGHGDSEDQLQPKLVEALLGYRA 4282

Query: 315  VSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPD--NVPLVVEGLEG 370
            + I+ G G +  +C     NV        SWG     +LGR G D   VP+ +E L G
Sbjct: 4283 IDIACGSGDAQTLCITDDDNVW-------SWGDGDYGKLGRGGSDGCKVPMKIESLAG 4333



 Score = 65.1 bits (157), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 50/157 (31%), Positives = 74/157 (47%), Gaps = 10/157 (6%)

Query: 31   SFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPS-DVTSVSAGHYHSLAVTNNGAVWAWG 89
            S+GDG  G LG      G       P ++  L    VT V  G   S+A+T +G+V+ WG
Sbjct: 4305 SWGDGDYGKLG-----RGGSDGCKVPMKIESLAGLGVTKVECGSQFSVALTRSGSVYTWG 4359

Query: 90   RNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRG 149
            + +  +LG G  +       PK+V  L    + +     +   A  D G ++ WG +  G
Sbjct: 4360 KGDYHRLGHGNTDH---VRRPKKVAALQGKKIISIATGSLHCVACSDAGEVFTWGDNDEG 4416

Query: 150  QLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALA 186
            QLG G  ++    P  V++L G+ IVKV  G  H LA
Sbjct: 4417 QLGDGT-VSAIQRPRLVQSLQGKHIVKVICGSAHTLA 4452



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 81/310 (26%), Positives = 127/310 (40%), Gaps = 57/310 (18%)

Query: 69   VSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNV--CAAFA 126
            ++ G     AVT +G ++A G     +LG G  +S  T   P  VE L  V +   A  +
Sbjct: 4127 IAGGEQTLYAVTPDGKLYATGYGAGGRLGVGGTDSVTT---PTLVESLQHVMIKKVAVNS 4183

Query: 127  SGVVSSAIGDDGSLWVWGKSKRGQLGLG-KDITEAIVPSRVEALAGEKIVKVSFGWGHAL 185
             G    A+  DG ++ WG+ + G+LG G +D  +   P  +E+L+G  +V ++ G  H+ 
Sbjct: 4184 GGKHCLALSSDGEVFSWGEGEDGKLGHGNRDSYDR--PKLIESLSGIGVVDIACGSAHSA 4241

Query: 186  AQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEG 245
              T  G +  WG    GR G LG                                    G
Sbjct: 4242 CITIQGHVLTWG---KGRYGRLG-----------------------------------HG 4263

Query: 246  MEKEKYMPIIWEPFLVEGVEVVDIACGF--DHSLVLGRNGVLLSCGSNVYGQLGREKQDM 303
              +++  P + E  L  G   +DIACG     +L +  +  + S G   YG+LGR   D 
Sbjct: 4264 DSEDQLQPKLVEALL--GYRAIDIACGSGDAQTLCITDDDNVWSWGDGDYGKLGRGGSDG 4321

Query: 304  GMFPVDINFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPDNV-- 361
               P+ I        +GLG +   C  + S     +  + +WG     +LG    D+V  
Sbjct: 4322 CKVPMKIES-----LAGLGVTKVECGSQFSVALTRSGSVYTWGKGDYHRLGHGNTDHVRR 4376

Query: 362  PLVVEGLEGE 371
            P  V  L+G+
Sbjct: 4377 PKKVAALQGK 4386



 Score = 39.3 bits (90), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 58/242 (23%), Positives = 93/242 (38%), Gaps = 54/242 (22%)

Query: 135  GDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLF 194
            G   +++ WG + RGQLG G D +    P+  EAL+  + ++++ G     A T DGKL+
Sbjct: 4086 GGASTIFGWGHNHRGQLG-GLDGSRIKNPTPCEALSLLRPIQIAGGEQTLYAVTPDGKLY 4144

Query: 195  GWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPI 254
              GY A                         +D   + + +E  Q ++            
Sbjct: 4145 ATGYGA-----------------GGRLGVGGTDSVTTPTLVESLQHVM------------ 4175

Query: 255  IWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDIN--- 311
                     ++ V +  G  H L L  +G + S G    G+LG   +D    P  I    
Sbjct: 4176 ---------IKKVAVNSGGKHCLALSSDGEVFSWGEGEDGKLGHGNRDSYDRPKLIESLS 4226

Query: 312  -FHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPDN--VPLVVEGL 368
                V I+ G  HS  I       + G    +++WG  R  +LG    ++   P +VE L
Sbjct: 4227 GIGVVDIACGSAHSACI------TIQG---HVLTWGKGRYGRLGHGDSEDQLQPKLVEAL 4277

Query: 369  EG 370
             G
Sbjct: 4278 LG 4279


>gi|114630750|ref|XP_001167753.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC4 isoform 8
           [Pan troglodytes]
 gi|410295452|gb|JAA26326.1| hect domain and RLD 4 [Pan troglodytes]
 gi|410333085|gb|JAA35489.1| hect domain and RLD 4 [Pan troglodytes]
          Length = 1057

 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 64/245 (26%), Positives = 114/245 (46%), Gaps = 43/245 (17%)

Query: 55  EPTRVPGLPS-DVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRV 113
           +P +V  L + ++ +VS G  H+LA+ + G V+AWG +++ QLG   + S      P+ +
Sbjct: 74  KPEQVVALDAQNIVAVSCGEAHTLALNDKGQVYAWGLDSDGQLG--LVGSEECIRVPRNI 131

Query: 114 EGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEK 173
           + L  + +         S A+     ++ WG++K GQLGLG D  +   P  +++L G  
Sbjct: 132 KSLSDIQIVQVACGYYHSLALSKASEVFCWGQNKYGQLGLGTDCKKQTSPQLLKSLLGIP 191

Query: 174 IVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSS 233
            ++V+ G  H+   T  G +FGWG +  G++G          L+                
Sbjct: 192 FMQVAAGGAHSFVLTLSGAIFGWGRNKFGQLG----------LND--------------- 226

Query: 234 TIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVY 293
                        E ++Y+P + +   +   ++V I CG DH+  L + G + + G+  Y
Sbjct: 227 -------------ENDRYVPNLLKS--LRSQKIVYICCGEDHTAALTKEGGVFTFGAGGY 271

Query: 294 GQLGR 298
           GQLG 
Sbjct: 272 GQLGH 276



 Score = 81.6 bits (200), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 62/192 (32%), Positives = 100/192 (52%), Gaps = 16/192 (8%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVP-GLPS----DVTSVSAGHYHSLAVTNNG 83
           V ++G  S G LGL      VG +  E  RVP  + S     +  V+ G+YHSLA++   
Sbjct: 105 VYAWGLDSDGQLGL------VGSE--ECIRVPRNIKSLSDIQIVQVACGYYHSLALSKAS 156

Query: 84  AVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVW 143
            V+ WG+N   QLG G    + T   P+ ++ L  +      A G  S  +   G+++ W
Sbjct: 157 EVFCWGQNKYGQLGLGTDCKKQT--SPQLLKSLLGIPFMQVAAGGAHSFVLTLSGAIFGW 214

Query: 144 GKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGR 203
           G++K GQLGL  D  +  VP+ +++L  +KIV +  G  H  A T++G +F +G    G+
Sbjct: 215 GRNKFGQLGLN-DENDRYVPNLLKSLRSQKIVYICCGEDHTAALTKEGGVFTFGAGGYGQ 273

Query: 204 IGNLGKALESSP 215
           +G+   + E +P
Sbjct: 274 LGHNSTSHEINP 285



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 67/273 (24%), Positives = 111/273 (40%), Gaps = 57/273 (20%)

Query: 87  AWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKS 146
            WG  +  QLG G ++      +P++ +      V         +  + DDG+++  G +
Sbjct: 3   CWGNASFGQLGLGGIDEEIVL-EPRKSDFFINKRVRDVGCGLRHTVFVLDDGTVYTCGCN 61

Query: 147 KRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGN 206
             GQLG  K   +   P +V AL  + IV VS G  H LA  + G+++ WG  +DG++G 
Sbjct: 62  DLGQLGHEKSRKK---PEQVVALDAQNIVAVSCGEAHTLALNDKGQVYAWGLDSDGQLGL 118

Query: 207 LGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEV 266
           +G   E   +  NI   S+                                      +++
Sbjct: 119 VGSE-ECIRVPRNIKSLSD--------------------------------------IQI 139

Query: 267 VDIACGFDHSLVLGRNGVLLSCGSNVYGQLG-----REKQDMGMFPVDINFHPVSISSGL 321
           V +ACG+ HSL L +   +   G N YGQLG     +++    +    +    + +++G 
Sbjct: 140 VQVACGYYHSLALSKASEVFCWGQNKYGQLGLGTDCKKQTSPQLLKSLLGIPFMQVAAGG 199

Query: 322 GHSLAICEVRSSNVTGGARGIVSWGWNRSSQLG 354
            HS  +          GA  I  WG N+  QLG
Sbjct: 200 AHSFVL-------TLSGA--IFGWGRNKFGQLG 223


>gi|114630758|ref|XP_001167783.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC4 isoform 9
           [Pan troglodytes]
 gi|410295450|gb|JAA26325.1| hect domain and RLD 4 [Pan troglodytes]
 gi|410333083|gb|JAA35488.1| hect domain and RLD 4 [Pan troglodytes]
          Length = 1049

 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 64/245 (26%), Positives = 114/245 (46%), Gaps = 43/245 (17%)

Query: 55  EPTRVPGLPS-DVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRV 113
           +P +V  L + ++ +VS G  H+LA+ + G V+AWG +++ QLG   + S      P+ +
Sbjct: 74  KPEQVVALDAQNIVAVSCGEAHTLALNDKGQVYAWGLDSDGQLG--LVGSEECIRVPRNI 131

Query: 114 EGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEK 173
           + L  + +         S A+     ++ WG++K GQLGLG D  +   P  +++L G  
Sbjct: 132 KSLSDIQIVQVACGYYHSLALSKASEVFCWGQNKYGQLGLGTDCKKQTSPQLLKSLLGIP 191

Query: 174 IVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSS 233
            ++V+ G  H+   T  G +FGWG +  G++G          L+                
Sbjct: 192 FMQVAAGGAHSFVLTLSGAIFGWGRNKFGQLG----------LND--------------- 226

Query: 234 TIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVY 293
                        E ++Y+P + +   +   ++V I CG DH+  L + G + + G+  Y
Sbjct: 227 -------------ENDRYVPNLLKS--LRSQKIVYICCGEDHTAALTKEGGVFTFGAGGY 271

Query: 294 GQLGR 298
           GQLG 
Sbjct: 272 GQLGH 276



 Score = 81.6 bits (200), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 62/192 (32%), Positives = 100/192 (52%), Gaps = 16/192 (8%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVP-GLPS----DVTSVSAGHYHSLAVTNNG 83
           V ++G  S G LGL      VG +  E  RVP  + S     +  V+ G+YHSLA++   
Sbjct: 105 VYAWGLDSDGQLGL------VGSE--ECIRVPRNIKSLSDIQIVQVACGYYHSLALSKAS 156

Query: 84  AVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVW 143
            V+ WG+N   QLG G    + T   P+ ++ L  +      A G  S  +   G+++ W
Sbjct: 157 EVFCWGQNKYGQLGLGTDCKKQT--SPQLLKSLLGIPFMQVAAGGAHSFVLTLSGAIFGW 214

Query: 144 GKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGR 203
           G++K GQLGL  D  +  VP+ +++L  +KIV +  G  H  A T++G +F +G    G+
Sbjct: 215 GRNKFGQLGLN-DENDRYVPNLLKSLRSQKIVYICCGEDHTAALTKEGGVFTFGAGGYGQ 273

Query: 204 IGNLGKALESSP 215
           +G+   + E +P
Sbjct: 274 LGHNSTSHEINP 285



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 67/273 (24%), Positives = 111/273 (40%), Gaps = 57/273 (20%)

Query: 87  AWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKS 146
            WG  +  QLG G ++      +P++ +      V         +  + DDG+++  G +
Sbjct: 3   CWGNASFGQLGLGGIDEEIVL-EPRKSDFFINKRVRDVGCGLRHTVFVLDDGTVYTCGCN 61

Query: 147 KRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGN 206
             GQLG  K   +   P +V AL  + IV VS G  H LA  + G+++ WG  +DG++G 
Sbjct: 62  DLGQLGHEKSRKK---PEQVVALDAQNIVAVSCGEAHTLALNDKGQVYAWGLDSDGQLGL 118

Query: 207 LGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEV 266
           +G   E   +  NI   S+                                      +++
Sbjct: 119 VGSE-ECIRVPRNIKSLSD--------------------------------------IQI 139

Query: 267 VDIACGFDHSLVLGRNGVLLSCGSNVYGQLG-----REKQDMGMFPVDINFHPVSISSGL 321
           V +ACG+ HSL L +   +   G N YGQLG     +++    +    +    + +++G 
Sbjct: 140 VQVACGYYHSLALSKASEVFCWGQNKYGQLGLGTDCKKQTSPQLLKSLLGIPFMQVAAGG 199

Query: 322 GHSLAICEVRSSNVTGGARGIVSWGWNRSSQLG 354
            HS  +          GA  I  WG N+  QLG
Sbjct: 200 AHSFVL-------TLSGA--IFGWGRNKFGQLG 223


>gi|397520493|ref|XP_003830351.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC4 isoform 2
           [Pan paniscus]
 gi|410221282|gb|JAA07860.1| hect domain and RLD 4 [Pan troglodytes]
 gi|410259926|gb|JAA17929.1| hect domain and RLD 4 [Pan troglodytes]
          Length = 1057

 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 64/245 (26%), Positives = 114/245 (46%), Gaps = 43/245 (17%)

Query: 55  EPTRVPGLPS-DVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRV 113
           +P +V  L + ++ +VS G  H+LA+ + G V+AWG +++ QLG   + S      P+ +
Sbjct: 74  KPEQVVALDAQNIVAVSCGEAHTLALNDKGQVYAWGLDSDGQLG--LVGSEECIRVPRNI 131

Query: 114 EGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEK 173
           + L  + +         S A+     ++ WG++K GQLGLG D  +   P  +++L G  
Sbjct: 132 KSLSDIQIVQVACGYYHSLALSKASEVFCWGQNKYGQLGLGTDCKKQTSPQLLKSLLGIP 191

Query: 174 IVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSS 233
            ++V+ G  H+   T  G +FGWG +  G++G          L+                
Sbjct: 192 FMQVAAGGAHSFVLTLSGAIFGWGRNKFGQLG----------LND--------------- 226

Query: 234 TIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVY 293
                        E ++Y+P + +   +   ++V I CG DH+  L + G + + G+  Y
Sbjct: 227 -------------ENDRYVPNLLKS--LRSQKIVYICCGEDHTAALTKEGGVFTFGAGGY 271

Query: 294 GQLGR 298
           GQLG 
Sbjct: 272 GQLGH 276



 Score = 81.6 bits (200), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 62/192 (32%), Positives = 100/192 (52%), Gaps = 16/192 (8%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVP-GLPS----DVTSVSAGHYHSLAVTNNG 83
           V ++G  S G LGL      VG +  E  RVP  + S     +  V+ G+YHSLA++   
Sbjct: 105 VYAWGLDSDGQLGL------VGSE--ECIRVPRNIKSLSDIQIVQVACGYYHSLALSKAS 156

Query: 84  AVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVW 143
            V+ WG+N   QLG G    + T   P+ ++ L  +      A G  S  +   G+++ W
Sbjct: 157 EVFCWGQNKYGQLGLGTDCKKQT--SPQLLKSLLGIPFMQVAAGGAHSFVLTLSGAIFGW 214

Query: 144 GKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGR 203
           G++K GQLGL  D  +  VP+ +++L  +KIV +  G  H  A T++G +F +G    G+
Sbjct: 215 GRNKFGQLGLN-DENDRYVPNLLKSLRSQKIVYICCGEDHTAALTKEGGVFTFGAGGYGQ 273

Query: 204 IGNLGKALESSP 215
           +G+   + E +P
Sbjct: 274 LGHNSTSHEINP 285



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 67/275 (24%), Positives = 112/275 (40%), Gaps = 57/275 (20%)

Query: 85  VWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWG 144
           +  WG  +  QLG G ++      +P++ +      V         +  + DDG+++  G
Sbjct: 1   MLCWGNASFGQLGLGGIDEEIVL-EPRKSDFFINKRVRDVGCGLRHTVFVLDDGTVYTCG 59

Query: 145 KSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRI 204
            +  GQLG  K   +   P +V AL  + IV VS G  H LA  + G+++ WG  +DG++
Sbjct: 60  CNDLGQLGHEKSRKK---PEQVVALDAQNIVAVSCGEAHTLALNDKGQVYAWGLDSDGQL 116

Query: 205 GNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGV 264
           G +G   E   +  NI   S+                                      +
Sbjct: 117 GLVGSE-ECIRVPRNIKSLSD--------------------------------------I 137

Query: 265 EVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLG-----REKQDMGMFPVDINFHPVSISS 319
           ++V +ACG+ HSL L +   +   G N YGQLG     +++    +    +    + +++
Sbjct: 138 QIVQVACGYYHSLALSKASEVFCWGQNKYGQLGLGTDCKKQTSPQLLKSLLGIPFMQVAA 197

Query: 320 GLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLG 354
           G  HS  +          GA  I  WG N+  QLG
Sbjct: 198 GGAHSFVL-------TLSGA--IFGWGRNKFGQLG 223


>gi|397520491|ref|XP_003830350.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC4 isoform 1
           [Pan paniscus]
 gi|410221280|gb|JAA07859.1| hect domain and RLD 4 [Pan troglodytes]
 gi|410259924|gb|JAA17928.1| hect domain and RLD 4 [Pan troglodytes]
          Length = 1049

 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 64/245 (26%), Positives = 114/245 (46%), Gaps = 43/245 (17%)

Query: 55  EPTRVPGLPS-DVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRV 113
           +P +V  L + ++ +VS G  H+LA+ + G V+AWG +++ QLG   + S      P+ +
Sbjct: 74  KPEQVVALDAQNIVAVSCGEAHTLALNDKGQVYAWGLDSDGQLG--LVGSEECIRVPRNI 131

Query: 114 EGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEK 173
           + L  + +         S A+     ++ WG++K GQLGLG D  +   P  +++L G  
Sbjct: 132 KSLSDIQIVQVACGYYHSLALSKASEVFCWGQNKYGQLGLGTDCKKQTSPQLLKSLLGIP 191

Query: 174 IVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSS 233
            ++V+ G  H+   T  G +FGWG +  G++G          L+                
Sbjct: 192 FMQVAAGGAHSFVLTLSGAIFGWGRNKFGQLG----------LND--------------- 226

Query: 234 TIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVY 293
                        E ++Y+P + +   +   ++V I CG DH+  L + G + + G+  Y
Sbjct: 227 -------------ENDRYVPNLLKS--LRSQKIVYICCGEDHTAALTKEGGVFTFGAGGY 271

Query: 294 GQLGR 298
           GQLG 
Sbjct: 272 GQLGH 276



 Score = 81.6 bits (200), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 62/192 (32%), Positives = 100/192 (52%), Gaps = 16/192 (8%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVP-GLPS----DVTSVSAGHYHSLAVTNNG 83
           V ++G  S G LGL      VG +  E  RVP  + S     +  V+ G+YHSLA++   
Sbjct: 105 VYAWGLDSDGQLGL------VGSE--ECIRVPRNIKSLSDIQIVQVACGYYHSLALSKAS 156

Query: 84  AVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVW 143
            V+ WG+N   QLG G    + T   P+ ++ L  +      A G  S  +   G+++ W
Sbjct: 157 EVFCWGQNKYGQLGLGTDCKKQT--SPQLLKSLLGIPFMQVAAGGAHSFVLTLSGAIFGW 214

Query: 144 GKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGR 203
           G++K GQLGL  D  +  VP+ +++L  +KIV +  G  H  A T++G +F +G    G+
Sbjct: 215 GRNKFGQLGLN-DENDRYVPNLLKSLRSQKIVYICCGEDHTAALTKEGGVFTFGAGGYGQ 273

Query: 204 IGNLGKALESSP 215
           +G+   + E +P
Sbjct: 274 LGHNSTSHEINP 285



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 67/273 (24%), Positives = 111/273 (40%), Gaps = 57/273 (20%)

Query: 87  AWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKS 146
            WG  +  QLG G ++      +P++ +      V         +  + DDG+++  G +
Sbjct: 3   CWGNASFGQLGLGGIDEEIVL-EPRKSDFFINKRVRDVGCGLRHTVFVLDDGTVYTCGCN 61

Query: 147 KRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGN 206
             GQLG  K   +   P +V AL  + IV VS G  H LA  + G+++ WG  +DG++G 
Sbjct: 62  DLGQLGHEKSRKK---PEQVVALDAQNIVAVSCGEAHTLALNDKGQVYAWGLDSDGQLGL 118

Query: 207 LGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEV 266
           +G   E   +  NI   S+                                      +++
Sbjct: 119 VGSE-ECIRVPRNIKSLSD--------------------------------------IQI 139

Query: 267 VDIACGFDHSLVLGRNGVLLSCGSNVYGQLG-----REKQDMGMFPVDINFHPVSISSGL 321
           V +ACG+ HSL L +   +   G N YGQLG     +++    +    +    + +++G 
Sbjct: 140 VQVACGYYHSLALSKASEVFCWGQNKYGQLGLGTDCKKQTSPQLLKSLLGIPFMQVAAGG 199

Query: 322 GHSLAICEVRSSNVTGGARGIVSWGWNRSSQLG 354
            HS  +          GA  I  WG N+  QLG
Sbjct: 200 AHSFVL-------TLSGA--IFGWGRNKFGQLG 223


>gi|408681156|ref|YP_006880983.1| LPXTG-motif cell wall anchor domain [Streptomyces venezuelae ATCC
           10712]
 gi|328885485|emb|CCA58724.1| LPXTG-motif cell wall anchor domain [Streptomyces venezuelae ATCC
           10712]
          Length = 408

 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 70/199 (35%), Positives = 105/199 (52%), Gaps = 15/199 (7%)

Query: 20  FMRSASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAV 79
           F  + +   V S+G  S G LG      G   +   PT VP L +D+  V+AG  H+LA+
Sbjct: 94  FALARTDKTVKSWGHNSSGQLG-----NGGNTNQTVPTTVPRL-TDIKDVAAGGKHALAL 147

Query: 80  TNNGAVWAWGRNNEVQLGRGAL-ESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDG 138
             +G V++WG N+  QLG     +SR     P RV+G+ +V   +A      S A+ ++G
Sbjct: 148 DTSGQVYSWGDNSYGQLGNNRTGDSRTV---PDRVQGMPKVKQISAGCD--FSLALLENG 202

Query: 139 SLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGY 198
            ++ WG+   GQLG G   T + VP +V+ L  E IV++  G  HALA T D  +  WGY
Sbjct: 203 KVYAWGRGIHGQLGTGNRATSS-VPRQVQGL--ENIVEIDAGCYHALALTADDTVKSWGY 259

Query: 199 SADGRIGNLGKALESSPLD 217
           +  G++GN      + P+D
Sbjct: 260 NLYGQLGNSSTKSSTLPVD 278



 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 82/291 (28%), Positives = 122/291 (41%), Gaps = 63/291 (21%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGL-PSDVTSVSAGHYHS-----LAVTNN 82
           V+S+G G  G LG      G   D+  P+ V  L   DV  +SAG   S     LA T+ 
Sbjct: 47  VLSWGAGRTGQLG-----NGTLSDSLSPSSVTSLFRGDVDQMSAGGTSSADSFALARTDK 101

Query: 83  GAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWV 142
             V +WG N+  QLG G   ++     P  V  L  +   AA   G  + A+   G ++ 
Sbjct: 102 -TVKSWGHNSSGQLGNGGNTNQTV---PTTVPRLTDIKDVAA--GGKHALALDTSGQVYS 155

Query: 143 WGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADG 202
           WG +  GQLG  +      VP RV+ +   K+ ++S G   +LA  E+GK++ WG    G
Sbjct: 156 WGDNSYGQLGNNRTGDSRTVPDRVQGMP--KVKQISAGCDFSLALLENGKVYAWGRGIHG 213

Query: 203 RIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVE 262
           ++G   +A  S P                                             V+
Sbjct: 214 QLGTGNRATSSVPRQ-------------------------------------------VQ 230

Query: 263 GVE-VVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINF 312
           G+E +V+I  G  H+L L  +  + S G N+YGQLG         PVD+++
Sbjct: 231 GLENIVEIDAGCYHALALTADDTVKSWGYNLYGQLGNSSTKSSTLPVDVDW 281



 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 67/200 (33%), Positives = 103/200 (51%), Gaps = 22/200 (11%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYE-PTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWA 87
           V S+GD S G LG   +     GD+   P RV G+P  V  +SAG   SLA+  NG V+A
Sbjct: 153 VYSWGDNSYGQLGNNRT-----GDSRTVPDRVQGMPK-VKQISAGCDFSLALLENGKVYA 206

Query: 88  WGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSK 147
           WGR    QLG G   +RAT + P++V+GL+  N+    A    + A+  D ++  WG + 
Sbjct: 207 WGRGIHGQLGTG---NRATSSVPRQVQGLE--NIVEIDAGCYHALALTADDTVKSWGYNL 261

Query: 148 RGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNL 207
            GQLG       + +P  V+ + G  +  +  G  H   +T D  ++GWG +  G++   
Sbjct: 262 YGQLG-NSSTKSSTLPVDVDWIEG--VSDIEAGAFHNYVKTSDSHVWGWGNNQYGQL--- 315

Query: 208 GKALESS-PLDSNIDRSSES 226
              LES    D+N+ R++ +
Sbjct: 316 ---LESDEAFDANVSRTNRT 332



 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 55/183 (30%), Positives = 90/183 (49%), Gaps = 17/183 (9%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAW 88
           V ++G G  G LG     TG    +  P +V GL  ++  + AG YH+LA+T +  V +W
Sbjct: 204 VYAWGRGIHGQLG-----TGNRATSSVPRQVQGL-ENIVEIDAGCYHALALTADDTVKSW 257

Query: 89  GRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKR 148
           G N   QLG  + +S     D   +EG+  +    AF + V +S    D  +W WG ++ 
Sbjct: 258 GYNLYGQLGNSSTKSSTLPVDVDWIEGVSDIE-AGAFHNYVKTS----DSHVWGWGNNQY 312

Query: 149 GQL-----GLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGR 203
           GQL         +++     + VE    E +  ++ G  H +A T D  +F WG++ +G+
Sbjct: 313 GQLLESDEAFDANVSRTNRTAPVEIPRLEGVQHLAAGARHGVAVTAD-DVFTWGHNGEGQ 371

Query: 204 IGN 206
           +GN
Sbjct: 372 LGN 374



 Score = 54.3 bits (129), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 62/237 (26%), Positives = 98/237 (41%), Gaps = 63/237 (26%)

Query: 143 WGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGW-----GHALAQTEDGKLFGWG 197
           WG  + GQLG G  +++++ PS V +L    + ++S G        ALA+T D  +  WG
Sbjct: 50  WGAGRTGQLGNGT-LSDSLSPSSVTSLFRGDVDQMSAGGTSSADSFALART-DKTVKSWG 107

Query: 198 YSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWE 257
           +++ G++GN G   ++ P                 +T+ +                    
Sbjct: 108 HNSSGQLGNGGNTNQTVP-----------------TTVPRL------------------- 131

Query: 258 PFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQ-DMGMFPVDINFHP-- 314
                  ++ D+A G  H+L L  +G + S G N YGQLG  +  D    P  +   P  
Sbjct: 132 ------TDIKDVAAGGKHALALDTSGQVYSWGDNSYGQLGNNRTGDSRTVPDRVQGMPKV 185

Query: 315 VSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQL--GRMGPDNVPLVVEGLE 369
             IS+G   SLA+ E            + +WG     QL  G     +VP  V+GLE
Sbjct: 186 KQISAGCDFSLALLENGK---------VYAWGRGIHGQLGTGNRATSSVPRQVQGLE 233



 Score = 39.3 bits (90), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 42/136 (30%), Positives = 58/136 (42%), Gaps = 16/136 (11%)

Query: 57  TRVPGLPSDV------TSVSAGHYHSLAVTNNGAVWAWGRNNEVQL-----GRGALESRA 105
           T+   LP DV      + + AG +H+   T++  VW WG N   QL        A  SR 
Sbjct: 270 TKSSTLPVDVDWIEGVSDIEAGAFHNYVKTSDSHVWGWGNNQYGQLLESDEAFDANVSRT 329

Query: 106 TWNDPKRVEGLDQVNVCAAFA-SGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPS 164
               P  +  L+ V   AA A  GV  +A  DD  ++ WG +  GQLG G  +       
Sbjct: 330 NRTAPVEIPRLEGVQHLAAGARHGVAVTA--DD--VFTWGHNGEGQLGNGTTVARYESVK 385

Query: 165 RVEALAGEKIVKVSFG 180
            +   +  K V VS G
Sbjct: 386 ILNEGSAIKNVAVSLG 401


>gi|344275073|ref|XP_003409338.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC4-like isoform
           2 [Loxodonta africana]
          Length = 1049

 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 65/245 (26%), Positives = 114/245 (46%), Gaps = 43/245 (17%)

Query: 55  EPTRVPGLPS-DVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRV 113
           +P +V  L + ++ +VS G  H+LA+ + G V+AWG +++ QLG   L S      P+ +
Sbjct: 74  KPEQVVALDAQNIVAVSCGEAHTLALNDKGQVYAWGLDSDGQLG--LLGSEECIRVPRNI 131

Query: 114 EGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEK 173
           + L  + +         S A+     ++ WG++K GQLGLG D  +   P  +++L G  
Sbjct: 132 KSLADIQIVQVACGYYHSLALSKASEVFCWGQNKYGQLGLGLDCKKQASPKLLKSLLGIP 191

Query: 174 IVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSS 233
            ++V+ G  H+   T  G +FGWG +  G++G          L+                
Sbjct: 192 FMQVAAGGAHSFVLTLSGAIFGWGRNKFGQLG----------LND--------------- 226

Query: 234 TIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVY 293
                        E ++Y+P + +   +   ++V I CG DH+  L + G + + G+  Y
Sbjct: 227 -------------ENDRYVPNLLKS--LRSQKIVYICCGEDHTAALTKEGGVFTFGAGGY 271

Query: 294 GQLGR 298
           GQLG 
Sbjct: 272 GQLGH 276



 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 62/192 (32%), Positives = 102/192 (53%), Gaps = 16/192 (8%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVP-GLPS----DVTSVSAGHYHSLAVTNNG 83
           V ++G  S G LGL      +G +  E  RVP  + S     +  V+ G+YHSLA++   
Sbjct: 105 VYAWGLDSDGQLGL------LGSE--ECIRVPRNIKSLADIQIVQVACGYYHSLALSKAS 156

Query: 84  AVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVW 143
            V+ WG+N   QLG G L+ +   + PK ++ L  +      A G  S  +   G+++ W
Sbjct: 157 EVFCWGQNKYGQLGLG-LDCKKQAS-PKLLKSLLGIPFMQVAAGGAHSFVLTLSGAIFGW 214

Query: 144 GKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGR 203
           G++K GQLGL  D  +  VP+ +++L  +KIV +  G  H  A T++G +F +G    G+
Sbjct: 215 GRNKFGQLGLN-DENDRYVPNLLKSLRSQKIVYICCGEDHTAALTKEGGVFTFGAGGYGQ 273

Query: 204 IGNLGKALESSP 215
           +G+   + E +P
Sbjct: 274 LGHNSTSHEINP 285



 Score = 70.9 bits (172), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 67/273 (24%), Positives = 111/273 (40%), Gaps = 57/273 (20%)

Query: 87  AWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKS 146
            WG  +  QLG G ++      +P++ +      V         +  + DDG+++  G +
Sbjct: 3   CWGNASFGQLGLGGIDEEIVL-EPRKSDFFINKKVRDVGCGLRHTVFVLDDGTVYTCGCN 61

Query: 147 KRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGN 206
             GQLG  K   +   P +V AL  + IV VS G  H LA  + G+++ WG  +DG++G 
Sbjct: 62  DLGQLGHEKSRKK---PEQVVALDAQNIVAVSCGEAHTLALNDKGQVYAWGLDSDGQLGL 118

Query: 207 LGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEV 266
           LG                      S   I   + + S                 +  +++
Sbjct: 119 LG----------------------SEECIRVPRNIKS-----------------LADIQI 139

Query: 267 VDIACGFDHSLVLGRNGVLLSCGSNVYGQLG-----REKQDMGMFPVDINFHPVSISSGL 321
           V +ACG+ HSL L +   +   G N YGQLG     +++    +    +    + +++G 
Sbjct: 140 VQVACGYYHSLALSKASEVFCWGQNKYGQLGLGLDCKKQASPKLLKSLLGIPFMQVAAGG 199

Query: 322 GHSLAICEVRSSNVTGGARGIVSWGWNRSSQLG 354
            HS  +          GA  I  WG N+  QLG
Sbjct: 200 AHSFVL-------TLSGA--IFGWGRNKFGQLG 223


>gi|221063272|gb|ACL98472.1| telophase disc 60 kDa protein [Xenopus laevis]
          Length = 497

 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 93/306 (30%), Positives = 146/306 (47%), Gaps = 41/306 (13%)

Query: 66  VTSVSAGHY--HSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLD-QVNVC 122
           V SV++G    HSL +T  G +W+WGRN++ QLG G ++     + PK +E L  +V V 
Sbjct: 141 VRSVASGSCAAHSLLITVEGKLWSWGRNDKGQLGHGDIKR---IDVPKLIESLKGEVFVH 197

Query: 123 AAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALA-GEKIVKVSFGW 181
           AA      + A+ ++GS++ +G++K GQLGLG + T+A VPS  + L  G+ I KV+ G 
Sbjct: 198 AACGRNH-TLALTENGSVYAFGENKMGQLGLG-NKTDA-VPSPAQILYNGQPITKVACGA 254

Query: 182 GHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKL 241
             ++     G L+ +G    G++G+            N D    +  +      E   + 
Sbjct: 255 EFSMIMDCKGNLYSFGCPEYGQLGH------------NSDGKYIARAQRIEYDCELIARR 302

Query: 242 VSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQ 301
           ++  +EK K   I+  P +V    V DIACG +HSL+L     + S G   YG+LG  +Q
Sbjct: 303 IAIFIEKTKDGQILPVPNVV----VRDIACGINHSLILDSQKRVFSWGFGGYGRLGHSEQ 358

Query: 302 DMGMFPVDINFH------PVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGR 355
              M P  +            I +G   S A+ E+          G+  WG   +S+   
Sbjct: 359 RDEMVPRLVKLFDFPGRGAAQIYAGATCSFAVSEM---------GGLFFWGATNTSRDST 409

Query: 356 MGPDNV 361
           M P  V
Sbjct: 410 MYPKAV 415


>gi|344275071|ref|XP_003409337.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC4-like isoform
           1 [Loxodonta africana]
          Length = 1057

 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 65/245 (26%), Positives = 114/245 (46%), Gaps = 43/245 (17%)

Query: 55  EPTRVPGLPS-DVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRV 113
           +P +V  L + ++ +VS G  H+LA+ + G V+AWG +++ QLG   L S      P+ +
Sbjct: 74  KPEQVVALDAQNIVAVSCGEAHTLALNDKGQVYAWGLDSDGQLG--LLGSEECIRVPRNI 131

Query: 114 EGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEK 173
           + L  + +         S A+     ++ WG++K GQLGLG D  +   P  +++L G  
Sbjct: 132 KSLADIQIVQVACGYYHSLALSKASEVFCWGQNKYGQLGLGLDCKKQASPKLLKSLLGIP 191

Query: 174 IVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSS 233
            ++V+ G  H+   T  G +FGWG +  G++G          L+                
Sbjct: 192 FMQVAAGGAHSFVLTLSGAIFGWGRNKFGQLG----------LND--------------- 226

Query: 234 TIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVY 293
                        E ++Y+P + +   +   ++V I CG DH+  L + G + + G+  Y
Sbjct: 227 -------------ENDRYVPNLLKS--LRSQKIVYICCGEDHTAALTKEGGVFTFGAGGY 271

Query: 294 GQLGR 298
           GQLG 
Sbjct: 272 GQLGH 276



 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 62/192 (32%), Positives = 102/192 (53%), Gaps = 16/192 (8%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVP-GLPS----DVTSVSAGHYHSLAVTNNG 83
           V ++G  S G LGL      +G +  E  RVP  + S     +  V+ G+YHSLA++   
Sbjct: 105 VYAWGLDSDGQLGL------LGSE--ECIRVPRNIKSLADIQIVQVACGYYHSLALSKAS 156

Query: 84  AVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVW 143
            V+ WG+N   QLG G L+ +   + PK ++ L  +      A G  S  +   G+++ W
Sbjct: 157 EVFCWGQNKYGQLGLG-LDCKKQAS-PKLLKSLLGIPFMQVAAGGAHSFVLTLSGAIFGW 214

Query: 144 GKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGR 203
           G++K GQLGL  D  +  VP+ +++L  +KIV +  G  H  A T++G +F +G    G+
Sbjct: 215 GRNKFGQLGLN-DENDRYVPNLLKSLRSQKIVYICCGEDHTAALTKEGGVFTFGAGGYGQ 273

Query: 204 IGNLGKALESSP 215
           +G+   + E +P
Sbjct: 274 LGHNSTSHEINP 285



 Score = 70.9 bits (172), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 67/273 (24%), Positives = 111/273 (40%), Gaps = 57/273 (20%)

Query: 87  AWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKS 146
            WG  +  QLG G ++      +P++ +      V         +  + DDG+++  G +
Sbjct: 3   CWGNASFGQLGLGGIDEEIVL-EPRKSDFFINKKVRDVGCGLRHTVFVLDDGTVYTCGCN 61

Query: 147 KRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGN 206
             GQLG  K   +   P +V AL  + IV VS G  H LA  + G+++ WG  +DG++G 
Sbjct: 62  DLGQLGHEKSRKK---PEQVVALDAQNIVAVSCGEAHTLALNDKGQVYAWGLDSDGQLGL 118

Query: 207 LGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEV 266
           LG                      S   I   + + S                 +  +++
Sbjct: 119 LG----------------------SEECIRVPRNIKS-----------------LADIQI 139

Query: 267 VDIACGFDHSLVLGRNGVLLSCGSNVYGQLG-----REKQDMGMFPVDINFHPVSISSGL 321
           V +ACG+ HSL L +   +   G N YGQLG     +++    +    +    + +++G 
Sbjct: 140 VQVACGYYHSLALSKASEVFCWGQNKYGQLGLGLDCKKQASPKLLKSLLGIPFMQVAAGG 199

Query: 322 GHSLAICEVRSSNVTGGARGIVSWGWNRSSQLG 354
            HS  +          GA  I  WG N+  QLG
Sbjct: 200 AHSFVL-------TLSGA--IFGWGRNKFGQLG 223


>gi|191961780|ref|NP_001122122.1| HECT and RLD domain containing E3 ubiquitin protein ligase 4
           [Xenopus (Silurana) tropicalis]
 gi|189441713|gb|AAI67508.1| LOC100036667 protein [Xenopus (Silurana) tropicalis]
          Length = 1049

 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 77/306 (25%), Positives = 135/306 (44%), Gaps = 57/306 (18%)

Query: 55  EPTRVPGLPSDV-TSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRV 113
           +P +V  L + +  +VS G  H+LA+ + G V++WG     Q+G    E       P+ +
Sbjct: 74  KPEQVGALDAQIIVAVSCGEAHTLALNDKGQVFSWGHAVYGQIGLSTAEEYI--RVPRNI 131

Query: 114 EGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEK 173
           + L  V +         S A+  D  ++ WG+++ GQLGLG +I +   P  +++L+G  
Sbjct: 132 KSLSDVQIVQVACGHHHSLALSKDSDIFSWGQNQYGQLGLGLEIKKECAPRHIKSLSGIP 191

Query: 174 IVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSS 233
              ++ G GH+ A T  G +FGWG +  G++G                 + E+D+ + + 
Sbjct: 192 FAHIAAGGGHSFALTISGAIFGWGRNKFGQLG----------------LTDETDRNVPA- 234

Query: 234 TIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVY 293
                   + + +  +K               ++ I CG DH+  L + G + + G+  Y
Sbjct: 235 --------LLKSLRSQK---------------IIHICCGEDHTAALTKEGGVFTFGAGGY 271

Query: 294 GQLGREKQDMGMFPVDINFHPV-----SISSGLGHSLAICEVRSSNVTGGARGIVSWGWN 348
           GQLG    +  + P  + F  +      I+ G  H+LA        V    R I S+G  
Sbjct: 272 GQLGHNSTNHEVNPRKV-FELMGSIVTQIACGRQHTLAF-------VPSSGR-IYSFGLG 322

Query: 349 RSSQLG 354
            + QLG
Sbjct: 323 GNGQLG 328



 Score = 84.3 bits (207), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 62/192 (32%), Positives = 102/192 (53%), Gaps = 16/192 (8%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVP-GLPS----DVTSVSAGHYHSLAVTNNG 83
           V S+G    G +GL T        A E  RVP  + S     +  V+ GH+HSLA++ + 
Sbjct: 105 VFSWGHAVYGQIGLST--------AEEYIRVPRNIKSLSDVQIVQVACGHHHSLALSKDS 156

Query: 84  AVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVW 143
            +++WG+N   QLG G LE +     P+ ++ L  +      A G  S A+   G+++ W
Sbjct: 157 DIFSWGQNQYGQLGLG-LEIKKECA-PRHIKSLSGIPFAHIAAGGGHSFALTISGAIFGW 214

Query: 144 GKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGR 203
           G++K GQLGL  D T+  VP+ +++L  +KI+ +  G  H  A T++G +F +G    G+
Sbjct: 215 GRNKFGQLGL-TDETDRNVPALLKSLRSQKIIHICCGEDHTAALTKEGGVFTFGAGGYGQ 273

Query: 204 IGNLGKALESSP 215
           +G+     E +P
Sbjct: 274 LGHNSTNHEVNP 285



 Score = 83.6 bits (205), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 81/301 (26%), Positives = 123/301 (40%), Gaps = 71/301 (23%)

Query: 85  VWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWG 144
           +  WG  +  QLG G ++      +P+R +     NV         +  + DDG+++  G
Sbjct: 1   MLCWGNTSFGQLGLGGIDEEVVL-EPRRCDFFINKNVRDVGCGSRHTVFVLDDGTVYTCG 59

Query: 145 KSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRI 204
            +  GQLG  K   +   P +V AL  + IV VS G  H LA  + G++F WG++  G+I
Sbjct: 60  CNDLGQLGHDKSRRK---PEQVGALDAQIIVAVSCGEAHTLALNDKGQVFSWGHAVYGQI 116

Query: 205 GNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGV 264
           G L  A E   +  NI   S+                                      V
Sbjct: 117 G-LSTAEEYIRVPRNIKSLSD--------------------------------------V 137

Query: 265 EVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLG-----------REKQDMGMFPVDINFH 313
           ++V +ACG  HSL L ++  + S G N YGQLG           R  + +   P      
Sbjct: 138 QIVQVACGHHHSLALSKDSDIFSWGQNQYGQLGLGLEIKKECAPRHIKSLSGIPF----- 192

Query: 314 PVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPD--NVPLVVEGLEGE 371
              I++G GHS A+       ++G    I  WG N+  QLG       NVP +++ L  +
Sbjct: 193 -AHIAAGGGHSFAL------TISG---AIFGWGRNKFGQLGLTDETDRNVPALLKSLRSQ 242

Query: 372 S 372
            
Sbjct: 243 K 243


>gi|395529104|ref|XP_003766660.1| PREDICTED: protein RCC2-like [Sarcophilus harrisii]
          Length = 483

 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 85/294 (28%), Positives = 134/294 (45%), Gaps = 37/294 (12%)

Query: 75  HSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAI 134
           HSL +T  G +W+WGRN + QLG G  +       PK +E L +  + +A      + A+
Sbjct: 121 HSLLITTEGKLWSWGRNEKGQLGHGDTKRVEA---PKLIEVLSKEVIVSAACGRNHTLAL 177

Query: 135 GDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALA-GEKIVKVSFGWGHALAQTEDGKL 193
            + GS++ +G++K GQLGLG   T+AI PS  + +  G+ I K++ G   ++     G L
Sbjct: 178 TETGSVFAFGENKMGQLGLGNQ-TDAI-PSPAQIMYNGQPITKMACGAEFSMIMDCKGNL 235

Query: 194 FGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMP 253
           + +G    G++G+            N D    +  +      E   + V+  +EK K   
Sbjct: 236 YSFGCPEYGQLGH------------NSDGKFIARAQRIEYDCELVPRRVAIFIEKTKDGQ 283

Query: 254 IIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFH 313
           I+  P +V    V D+ACG +H+LVL     + S G   YG+LG  +Q   M P  +   
Sbjct: 284 ILPVPNVV----VRDVACGTNHTLVLDSQKRVFSWGFGGYGRLGHAEQKDEMVPRLVKLF 339

Query: 314 ------PVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPDNV 361
                    I +G   S A+ EV          G+  WG   +S+   M P  V
Sbjct: 340 DFPGRGAAQIYAGYTCSFAVSEV---------GGLFFWGATNTSRESTMYPKAV 384



 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 52/175 (29%), Positives = 75/175 (42%), Gaps = 30/175 (17%)

Query: 66  VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAF 125
           + S + G  H+LA+T  G+V+A+G N   QLG G      T   P   + +         
Sbjct: 164 IVSAACGRNHTLALTETGSVFAFGENKMGQLGLG----NQTDAIPSPAQIMYNGQPITKM 219

Query: 126 ASGVVSSAIGD-DGSLWVWGKSKRGQLGL---GKDITEA--------IVPSRVEALAGEK 173
           A G   S I D  G+L+ +G  + GQLG    GK I  A        +VP RV A+  EK
Sbjct: 220 ACGAEFSMIMDCKGNLYSFGCPEYGQLGHNSDGKFIARAQRIEYDCELVPRRV-AIFIEK 278

Query: 174 -------------IVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSP 215
                        +  V+ G  H L      ++F WG+   GR+G+  +  E  P
Sbjct: 279 TKDGQILPVPNVVVRDVACGTNHTLVLDSQKRVFSWGFGGYGRLGHAEQKDEMVP 333


>gi|332028555|gb|EGI68592.1| Putative E3 ubiquitin-protein ligase HERC4 [Acromyrmex echinatior]
          Length = 1049

 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 79/302 (26%), Positives = 129/302 (42%), Gaps = 57/302 (18%)

Query: 59  VPGLPSDV-TSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLD 117
           +PGL + V   ++ G+ H+LAV   G +++WG N   QLG  +++   T   P+ ++ L 
Sbjct: 78  IPGLDAFVFRKIACGNCHTLAVNEWGQLFSWGCNMNGQLGLNSVD--CTERVPRMIKVLG 135

Query: 118 QVNVCAAFASGVVSS-AIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVK 176
             NV    A G   S A+ +DG L+ WG ++ GQLGLG   T  I P R+  LA   I  
Sbjct: 136 -TNVIVQIACGTEHSIALTNDGELYAWGSNREGQLGLGSYTTTEIKPKRISTLAAVPIAF 194

Query: 177 VSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIE 236
           ++ G  H +  ++ G +F WG +  G++G              ++   + +      T+ 
Sbjct: 195 IACGGYHTIVISKSGAVFSWGRNTFGQLG--------------LNDVQQRNLPCQLRTLR 240

Query: 237 KAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQL 296
            A+                          V    CG + S+ L  +G + +CG+ +YGQL
Sbjct: 241 NAK--------------------------VCYATCGEEFSVFLTMDGGVFTCGAGMYGQL 274

Query: 297 GREKQDMGMFPVDI----NFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQ 352
           G       + P  +          IS G  H+LA+   R          + +WG   + Q
Sbjct: 275 GHGNTTNEILPRQVMELMGSTVTQISCGKRHTLALVPSRGR--------VYAWGLGGAGQ 326

Query: 353 LG 354
           LG
Sbjct: 327 LG 328



 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 61/216 (28%), Positives = 104/216 (48%), Gaps = 20/216 (9%)

Query: 12  VNVLTSRIFMRSASGTA----------VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPG 61
           + VL + + ++ A GT           + ++G   +G LGL +  T       +P R+  
Sbjct: 131 IKVLGTNVIVQIACGTEHSIALTNDGELYAWGSNREGQLGLGSYTT----TEIKPKRIST 186

Query: 62  LPS-DVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVN 120
           L +  +  ++ G YH++ ++ +GAV++WGRN   QLG   ++ R   N P ++  L    
Sbjct: 187 LAAVPIAFIACGGYHTIVISKSGAVFSWGRNTFGQLGLNDVQQR---NLPCQLRTLRNAK 243

Query: 121 VCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFG 180
           VC A      S  +  DG ++  G    GQLG G + T  I+P +V  L G  + ++S G
Sbjct: 244 VCYATCGEEFSVFLTMDGGVFTCGAGMYGQLGHG-NTTNEILPRQVMELMGSTVTQISCG 302

Query: 181 WGHALAQTED-GKLFGWGYSADGRIGNLGKALESSP 215
             H LA     G+++ WG    G++GN      ++P
Sbjct: 303 KRHTLALVPSRGRVYAWGLGGAGQLGNRASQSATTP 338



 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 72/256 (28%), Positives = 117/256 (45%), Gaps = 51/256 (19%)

Query: 48  GVGG----DAYEPTRVPGL-PSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALE 102
           G+GG    + + P  V  +  S+V  ++ G  +++A+T  G V++ G N+  QLG     
Sbjct: 13  GLGGIEDENIFMPREVDFIEASNVEQIACGENYTVAITKEGKVYSCGNNDYGQLGHEKAR 72

Query: 103 SRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGK-DITEAI 161
            R      + + GLD             + A+ + G L+ WG +  GQLGL   D TE  
Sbjct: 73  KRL-----QLIPGLDAFVFRKIACGNCHTLAVNEWGQLFSWGCNMNGQLGLNSVDCTER- 126

Query: 162 VPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNID 221
           VP  ++ L    IV+++ G  H++A T DG+L+ WG + +G++G LG             
Sbjct: 127 VPRMIKVLGTNVIVQIACGTEHSIALTNDGELYAWGSNREGQLG-LG------------- 172

Query: 222 RSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGR 281
                    S +T E   K +S                 +  V +  IACG  H++V+ +
Sbjct: 173 ---------SYTTTEIKPKRIST----------------LAAVPIAFIACGGYHTIVISK 207

Query: 282 NGVLLSCGSNVYGQLG 297
           +G + S G N +GQLG
Sbjct: 208 SGAVFSWGRNTFGQLG 223



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 61/231 (26%), Positives = 108/231 (46%), Gaps = 24/231 (10%)

Query: 140 LWVWGKSKRGQLGLGKDITEAI-VPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGY 198
           ++ WG +  G+LGLG    E I +P  V+ +    + +++ G  + +A T++GK++  G 
Sbjct: 1   MFCWGSTIHGELGLGGIEDENIFMPREVDFIEASNVEQIACGENYTVAITKEGKVYSCGN 60

Query: 199 SADGRIGN--LGKALESSP-LDSNIDRSSESDQEISSSTIEKAQ----------KLVSEG 245
           +  G++G+    K L+  P LD+ + R        + +  E  Q          +L    
Sbjct: 61  NDYGQLGHEKARKRLQLIPGLDAFVFRKIACGNCHTLAVNEWGQLFSWGCNMNGQLGLNS 120

Query: 246 MEKEKYMPIIWEPFLVEGVEV-VDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMG 304
           ++  + +P + +   V G  V V IACG +HS+ L  +G L + GSN  GQLG     +G
Sbjct: 121 VDCTERVPRMIK---VLGTNVIVQIACGTEHSIALTNDGELYAWGSNREGQLG-----LG 172

Query: 305 MF-PVDINFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLG 354
            +   +I    +S  + +  +   C    + V   +  + SWG N   QLG
Sbjct: 173 SYTTTEIKPKRISTLAAVPIAFIACGGYHTIVISKSGAVFSWGRNTFGQLG 223



 Score = 52.0 bits (123), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 43/130 (33%), Positives = 65/130 (50%), Gaps = 17/130 (13%)

Query: 245 GMEKEK-YMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREK--Q 301
           G+E E  +MP   E   +E   V  IACG ++++ + + G + SCG+N YGQLG EK  +
Sbjct: 16  GIEDENIFMP--REVDFIEASNVEQIACGENYTVAITKEGKVYSCGNNDYGQLGHEKARK 73

Query: 302 DMGMFPVDINFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPD-- 359
            + + P    F    I+ G  H+LA+ E            + SWG N + QLG    D  
Sbjct: 74  RLQLIPGLDAFVFRKIACGNCHTLAVNEWGQ---------LFSWGCNMNGQLGLNSVDCT 124

Query: 360 -NVPLVVEGL 368
             VP +++ L
Sbjct: 125 ERVPRMIKVL 134


>gi|307178981|gb|EFN67497.1| Probable E3 ubiquitin-protein ligase HERC4 [Camponotus floridanus]
          Length = 1048

 Score = 92.0 bits (227), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 84/321 (26%), Positives = 138/321 (42%), Gaps = 67/321 (20%)

Query: 59  VPGLPSDV-TSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLD 117
           +PGL + V   ++ G  H+LAV   G +++WG N + QLG  +++   T   P+ V+ L 
Sbjct: 78  IPGLDAFVFKKIACGSCHTLAVNEWGQLFSWGCNMKGQLGLNSVD--CTERTPRMVKALG 135

Query: 118 QVNVCAAFASGVVSS-AIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVK 176
             +V    A G+  S A+ +DG L+ WG ++ GQLG+G      I P R+  LA   I  
Sbjct: 136 -TSVIVQIACGIEHSIALTNDGELYSWGSNREGQLGIGSHTVTEIKPKRIITLAAVPIAF 194

Query: 177 VSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIE 236
           ++ G  H +  ++ G +F WG +  G++G                  +++ Q I    + 
Sbjct: 195 IACGGYHTVVISKSGVVFAWGRNTFGQLG-----------------LNDTQQRIVPCQLR 237

Query: 237 KAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQL 296
                                   +   +V   ACG + S+ L  +G + +CG+ +YGQL
Sbjct: 238 T-----------------------LRNAKVCYAACGEEFSVFLTLDGGVFTCGAGMYGQL 274

Query: 297 GR--------EKQDMGMFPVDINFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWN 348
           G          +Q M +    +      IS G  H+LA+   R          + +WG  
Sbjct: 275 GHGNGMNEILPRQVMELMGSTVT----QISCGKRHTLALVPSRGR--------VYAWGLG 322

Query: 349 RSSQLGRMGPDN--VPLVVEG 367
            + QLG     +   PLVV G
Sbjct: 323 GAGQLGNRASRSATTPLVVLG 343



 Score = 88.6 bits (218), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 68/251 (27%), Positives = 118/251 (47%), Gaps = 52/251 (20%)

Query: 64  SDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCA 123
           ++V  ++ G  +++ +TN+G V++ G N+  QLG      R      + + GLD   V  
Sbjct: 34  NEVEQIACGENYTVTITNDGQVYSCGNNDYGQLGHEKARKRL-----QLIPGLDAF-VFK 87

Query: 124 AFASGVVSS-AIGDDGSLWVWGKSKRGQLGLGK-DITEAIVPSRVEALAGEKIVKVSFGW 181
             A G   + A+ + G L+ WG + +GQLGL   D TE   P  V+AL    IV+++ G 
Sbjct: 88  KIACGSCHTLAVNEWGQLFSWGCNMKGQLGLNSVDCTER-TPRMVKALGTSVIVQIACGI 146

Query: 182 GHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIE--KAQ 239
            H++A T DG+L+ WG + +G++G                        I S T+   K +
Sbjct: 147 EHSIALTNDGELYSWGSNREGQLG------------------------IGSHTVTEIKPK 182

Query: 240 KLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGRE 299
           ++++                 +  V +  IACG  H++V+ ++GV+ + G N +GQLG  
Sbjct: 183 RIIT-----------------LAAVPIAFIACGGYHTVVISKSGVVFAWGRNTFGQLGLN 225

Query: 300 KQDMGMFPVDI 310
                + P  +
Sbjct: 226 DTQQRIVPCQL 236



 Score = 81.3 bits (199), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 56/191 (29%), Positives = 95/191 (49%), Gaps = 12/191 (6%)

Query: 29  VVSFGDGSQGALGLPT-SLTGVGGDAYEPTRVPGLPS-DVTSVSAGHYHSLAVTNNGAVW 86
           + S+G   +G LG+ + ++T +     +P R+  L +  +  ++ G YH++ ++ +G V+
Sbjct: 158 LYSWGSNREGQLGIGSHTVTEI-----KPKRIITLAAVPIAFIACGGYHTVVISKSGVVF 212

Query: 87  AWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKS 146
           AWGRN   QLG    + R     P ++  L    VC A      S  +  DG ++  G  
Sbjct: 213 AWGRNTFGQLGLNDTQQRIV---PCQLRTLRNAKVCYAACGEEFSVFLTLDGGVFTCGAG 269

Query: 147 KRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTED-GKLFGWGYSADGRIG 205
             GQLG G  + E I+P +V  L G  + ++S G  H LA     G+++ WG    G++G
Sbjct: 270 MYGQLGHGNGMNE-ILPRQVMELMGSTVTQISCGKRHTLALVPSRGRVYAWGLGGAGQLG 328

Query: 206 NLGKALESSPL 216
           N      ++PL
Sbjct: 329 NRASRSATTPL 339



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 37/109 (33%), Positives = 54/109 (49%), Gaps = 14/109 (12%)

Query: 265 EVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREK--QDMGMFPVDINFHPVSISSGLG 322
           EV  IACG ++++ +  +G + SCG+N YGQLG EK  + + + P    F    I+ G  
Sbjct: 35  EVEQIACGENYTVTITNDGQVYSCGNNDYGQLGHEKARKRLQLIPGLDAFVFKKIACGSC 94

Query: 323 HSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPD---NVPLVVEGL 368
           H+LA+ E            + SWG N   QLG    D     P +V+ L
Sbjct: 95  HTLAVNEWGQ---------LFSWGCNMKGQLGLNSVDCTERTPRMVKAL 134


>gi|428170480|gb|EKX39405.1| hypothetical protein GUITHDRAFT_59944, partial [Guillardia theta
           CCMP2712]
          Length = 234

 Score = 92.0 bits (227), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 85/273 (31%), Positives = 124/273 (45%), Gaps = 53/273 (19%)

Query: 25  SGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGA 84
           S  +V+++G  S G LGLP S +   G   +     GLP+ + SV+AGH HSLA+T +G+
Sbjct: 13  SNGSVLAWGSNSDGQLGLPPSCSDAAGHLLQ-----GLPA-IVSVAAGHRHSLALTADGS 66

Query: 85  VWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWG 144
           V+AWG N   QLG G+LES  TW     +       V    A    S A+  +G++  WG
Sbjct: 67  VYAWGANVPGQLGDGSLES--TWRPTCVLSSRGSERVVRVAAGRAHSMALLSNGTVMAWG 124

Query: 145 KSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRI 204
               GQLG  +    A+ P  V    G ++ +++ G  H+LA  E G+++GWG +  G++
Sbjct: 125 WDAFGQLGQEEPQGAALRPRAVALPQGVRVCQIAAGGVHSLALDEKGQVWGWGGNGCGQV 184

Query: 205 GNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGV 264
           G                                      EG       P++    ++E  
Sbjct: 185 G--------------------------------------EGRVSYSSRPVV----VLE-- 200

Query: 265 EVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLG 297
           E   IA G  HSL + R G L   GSN  G+LG
Sbjct: 201 EASSIAAGASHSLAVARGG-LYGWGSNANGELG 232



 Score = 75.9 bits (185), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 82/287 (28%), Positives = 123/287 (42%), Gaps = 56/287 (19%)

Query: 69  VSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASG 128
           V AG  HSL + +NG+V AWG N++ QLG   L    +      ++GL  +   AA    
Sbjct: 1   VIAGGEHSLLLFSNGSVLAWGSNSDGQLG---LPPSCSDAAGHLLQGLPAIVSVAAGHR- 56

Query: 129 VVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAG-EKIVKVSFGWGHALAQ 187
             S A+  DGS++ WG +  GQLG G  +     P+ V +  G E++V+V+ G  H++A 
Sbjct: 57  -HSLALTADGSVYAWGANVPGQLGDGS-LESTWRPTCVLSSRGSERVVRVAAGRAHSMAL 114

Query: 188 TEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGME 247
             +G +  WG+ A G++G                      QE       + + +      
Sbjct: 115 LSNGTVMAWGWDAFGQLG----------------------QEEPQGAALRPRAVA----- 147

Query: 248 KEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFP 307
                       L +GV V  IA G  HSL L   G +   G N  GQ+G  +      P
Sbjct: 148 ------------LPQGVRVCQIAAGGVHSLALDEKGQVWGWGGNGCGQVGEGRVSYSSRP 195

Query: 308 VDINFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLG 354
           V +     SI++G  HSLA+             G+  WG N + +LG
Sbjct: 196 VVVLEEASSIAAGASHSLAVAR----------GGLYGWGSNANGELG 232



 Score = 44.7 bits (104), Expect = 0.082,   Method: Compositional matrix adjust.
 Identities = 34/111 (30%), Positives = 56/111 (50%), Gaps = 15/111 (13%)

Query: 259 FLVEGV-EVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDI-----NF 312
            L++G+  +V +A G  HSL L  +G + + G+NV GQLG    +    P  +     + 
Sbjct: 40  HLLQGLPAIVSVAAGHRHSLALTADGSVYAWGANVPGQLGDGSLESTWRPTCVLSSRGSE 99

Query: 313 HPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPDNVPL 363
             V +++G  HS+A+     SN T     +++WGW+   QLG+  P    L
Sbjct: 100 RVVRVAAGRAHSMALL----SNGT-----VMAWGWDAFGQLGQEEPQGAAL 141



 Score = 41.6 bits (96), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 38/106 (35%), Positives = 54/106 (50%), Gaps = 11/106 (10%)

Query: 51  GDAYEPTRVPGLPSDV--TSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWN 108
           G A  P R   LP  V    ++AG  HSLA+   G VW WG N   Q+G    E R +++
Sbjct: 138 GAALRP-RAVALPQGVRVCQIAAGGVHSLALDEKGQVWGWGGNGCGQVG----EGRVSYS 192

Query: 109 DPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLG 154
             + V  L++ +  AA AS  ++ A    G L+ WG +  G+LG G
Sbjct: 193 S-RPVVVLEEASSIAAGASHSLAVA---RGGLYGWGSNANGELGDG 234


>gi|375267564|emb|CCD28232.1| regulator of chromosome condensation, partial [Plasmopara viticola]
          Length = 287

 Score = 92.0 bits (227), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 86/284 (30%), Positives = 131/284 (46%), Gaps = 48/284 (16%)

Query: 28  AVVSFGDGSQGALGLPT------SLTGVGGDAYEPTRVPGLPSD-VTSVSAGHYHSLAVT 80
           AV++FG    G LG         ++ GV    + P  + GL  + V +VS G  H++A+ 
Sbjct: 4   AVITFGCNDDGQLGTGAKRRPMLAIDGVSAANF-PQNIDGLQDEEVVAVSCGSRHTMALA 62

Query: 81  NNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFAS--GVVSSAIGDDG 138
            +GAV++WG  +  QLG G L+S    N P++V   +Q  +   + S  G  S+A+  DG
Sbjct: 63  ASGAVYSWGWGSMGQLGHGDLKSV---NIPQKVVFFEQNGLKVNYISCGGCHSAAVTKDG 119

Query: 139 SLWVWGKSKRGQLGLGKDITEA-----IVPSRVEALAGEKIVKVSFGWGHALAQTEDGKL 193
           +L++WG+S  GQLGL K+   A     +     E L  E IVKVS G  H  A T  G++
Sbjct: 120 TLYMWGESHWGQLGLPKEHEAAHESLPVECPMPEGLTKECIVKVSCGGTHTAALTNHGRV 179

Query: 194 FGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMP 253
           + WG    G++G +G    ++  D ++ R+S                            P
Sbjct: 180 YIWGRGDSGQLG-IGSTWFNNTEDESLLRTSR---------------------------P 211

Query: 254 IIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLG 297
            + + F   G  VV +ACG  HS  +   G +       YG LG
Sbjct: 212 QLLDGF--NGERVVQVACGAFHSAAVTEKGYVYIWXKEDYGMLG 253



 Score = 54.7 bits (130), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 42/137 (30%), Positives = 66/137 (48%), Gaps = 17/137 (12%)

Query: 32  FGDGSQGALGLPTSLTGVGGDAYE--PTRVP---GLPSD-VTSVSAGHYHSLAVTNNGAV 85
           +G+   G LGLP         A+E  P   P   GL  + +  VS G  H+ A+TN+G V
Sbjct: 124 WGESHWGQLGLPKEHEA----AHESLPVECPMPEGLTKECIVKVSCGGTHTAALTNHGRV 179

Query: 86  WAWGRNNEVQLGRGAL-------ESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDG 138
           + WGR +  QLG G+        ES    + P+ ++G +   V         S+A+ + G
Sbjct: 180 YIWGRGDSGQLGIGSTWFNNTEDESLLRTSRPQLLDGFNGERVVQVACGAFHSAAVTEKG 239

Query: 139 SLWVWGKSKRGQLGLGK 155
            +++W K   G LG+G+
Sbjct: 240 YVYIWXKEDYGMLGIGQ 256


>gi|304407120|ref|ZP_07388774.1| Alpha-tubulin suppressor and related RCC1 domain-containing
           protein-like protein [Paenibacillus curdlanolyticus YK9]
 gi|304344107|gb|EFM09947.1| Alpha-tubulin suppressor and related RCC1 domain-containing
           protein-like protein [Paenibacillus curdlanolyticus YK9]
          Length = 521

 Score = 92.0 bits (227), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 81/258 (31%), Positives = 133/258 (51%), Gaps = 32/258 (12%)

Query: 52  DAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPK 111
           +A  P +VPGL SD+ +V AG YH++A+  +G VW WG N   ++G G+ E +     P+
Sbjct: 187 EAAIPVQVPGL-SDIIAVDAGDYHAMALRKDGTVWTWGYNYYGEIGNGSKELQFL---PQ 242

Query: 112 RVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLG-LGKDITEAIVPSRVEALA 170
           +V+GL +V   A  A+  VS+A+  DG++W WGK+  GQ G  GK  T ++ P +V+   
Sbjct: 243 QVKGLSKVTRIA--AAKYVSAALQSDGTVWAWGKNNSGQFGPAGKKSTVSVKPLQVKGF- 299

Query: 171 GEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEI 230
              IV +  G  H L    DG +    + A G    + + L+ S L      ++ +D   
Sbjct: 300 -NHIVSLKAGPSHLLGLRSDGTV----WQAGGTPAAMNRVLQVSSLSHITSIAAGTD--- 351

Query: 231 SSSTIEKAQKLVSEG-----------MEKEKYMP-IIWEP--FLVEGVEV-VDIACGFDH 275
           SS  ++KA KL + G            E+ K  P ++ +P  F+V G  V + ++ G+  
Sbjct: 352 SSLALDKAGKLYTWGEAALPGAGHYFSEESKGKPELVPDPIRFVVNGQPVSMPLSAGYYK 411

Query: 276 -SLVLGRNGVLLSCGSNV 292
            +L++ R+ +    G NV
Sbjct: 412 GTLMVPRSALWKELGVNV 429



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 87/380 (22%), Positives = 142/380 (37%), Gaps = 100/380 (26%)

Query: 15  LTSRIFMRSASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHY 74
           L + +F+ S   T+ V+     Q A    ++   V G A      P + + +TS+  G+ 
Sbjct: 10  LIASLFLLS---TSAVALAQSEQQA----STAARVTGTATASPTAPAIHTKITSMDVGNG 62

Query: 75  HSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAA-FASGVV--- 130
           H++ +  +  + AWG N + QLG G +  +     P  +  +  V   AA FA  +V   
Sbjct: 63  HAVFIRADATLSAWGWNRDGQLGLGTVYDQYL---PAYIPDMQNVKQAAAGFACSLVLLQ 119

Query: 131 --------------------------------------------SSAIGDDGSLWVWGKS 146
                                                       + A+  DG++W WG  
Sbjct: 120 DGTVWRSGNGCPGSERATDANNLIYQKQNGLPPKVQSISLGGAAALALLPDGTVWSWGND 179

Query: 147 KRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGN 206
                 L  + TEA +P +V  L+   I+ V  G  HA+A  +DG ++ WGY+  G IGN
Sbjct: 180 L-----LHSETTEAAIPVQVPGLS--DIIAVDAGDYHAMALRKDGTVWTWGYNYYGEIGN 232

Query: 207 LGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKE----------------- 249
             K L+  P         +  + +S  T   A K VS  ++ +                 
Sbjct: 233 GSKELQFLP---------QQVKGLSKVTRIAAAKYVSAALQSDGTVWAWGKNNSGQFGPA 283

Query: 250 -KYMPIIWEPFLVEGV-EVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFP 307
            K   +  +P  V+G   +V +  G  H L L  +G +   G       G       +  
Sbjct: 284 GKKSTVSVKPLQVKGFNHIVSLKAGPSHLLGLRSDGTVWQAG-------GTPAAMNRVLQ 336

Query: 308 VDINFHPVSISSGLGHSLAI 327
           V    H  SI++G   SLA+
Sbjct: 337 VSSLSHITSIAAGTDSSLAL 356


>gi|46250190|gb|AAH68656.1| MGC81035 protein [Xenopus laevis]
          Length = 530

 Score = 92.0 bits (227), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 53/156 (33%), Positives = 92/156 (58%), Gaps = 5/156 (3%)

Query: 62  LPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNV 121
           L   V  V+ G +HS+A+T++G V++WG NN  Q+G G   +++    P++V    Q  V
Sbjct: 126 LSKKVIKVACGSHHSMALTSDGEVFSWGYNNSGQVGSGTTANQSV---PRKVSSSLQSKV 182

Query: 122 CAAFASGVVSS-AIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFG 180
             + A+G  SS AI D+G ++ WG +  GQLGLG +    ++P R+       I++V  G
Sbjct: 183 VVSIAAGQTSSMAITDNGHVYGWGYNGTGQLGLG-NTGNQLMPCRLVFAQPVCIIQVVLG 241

Query: 181 WGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPL 216
           + H+LA ++ G L+ WG ++ G++G   K+ ++ P+
Sbjct: 242 YAHSLALSDQGVLYAWGANSHGQLGIGNKSNQTVPV 277



 Score = 81.3 bits (199), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 73/274 (26%), Positives = 123/274 (44%), Gaps = 23/274 (8%)

Query: 76  SLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVC-AAFASGVVSSAI 134
           ++  T N  V+ +G N+   LG G  +S      P+R++ L    +   ++ SG      
Sbjct: 34  AIYTTQNNEVFVFGMNSSNCLGTGDNQSAIM---PRRLDVLCGKKIKDLSYGSGPHILLC 90

Query: 135 GDDGSLWVWGKSKRGQLGLGKDITEAIVPSRV-EALAGEKIVKVSFGWGHALAQTEDGKL 193
            +DG ++ WG +   QLG G  I +   P +V   L  +K++KV+ G  H++A T DG++
Sbjct: 91  NEDGEVYSWGHNGYSQLGNGNTI-QGTTPVQVCMELLSKKVIKVACGSHHSMALTSDGEV 149

Query: 194 FGWGYSADGRIGNLGKALESSP------LDSNIDRSSESDQEISSSTIEKAQKL------ 241
           F WGY+  G++G+   A +S P      L S +  S  + Q  S +  +           
Sbjct: 150 FSWGYNNSGQVGSGTTANQSVPRKVSSSLQSKVVVSIAAGQTSSMAITDNGHVYGWGYNG 209

Query: 242 ---VSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGR 298
              +  G    + MP        + V ++ +  G+ HSL L   GVL + G+N +GQLG 
Sbjct: 210 TGQLGLGNTGNQLMPC--RLVFAQPVCIIQVVLGYAHSLALSDQGVLYAWGANSHGQLGI 267

Query: 299 EKQDMGMFPVDINFHPVSISSGLGHSLAICEVRS 332
             +     PV +  +   +     HS  I   +S
Sbjct: 268 GNKSNQTVPVKVGTNERMVEVAACHSTNISAAKS 301


>gi|116671730|ref|YP_832663.1| Ig family protein [Arthrobacter sp. FB24]
 gi|116611839|gb|ABK04563.1| Ig family protein [Arthrobacter sp. FB24]
          Length = 1129

 Score = 92.0 bits (227), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 92/333 (27%), Positives = 147/333 (44%), Gaps = 40/333 (12%)

Query: 57   TRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGL 116
            T  P   + + +VSA H  + A+ N+G VWAWGRNN  QLG GA    A    P +V G+
Sbjct: 713  TVAPAGLAGIKAVSASHSAAYALRNDGTVWAWGRNNAGQLGNGATTDSAA---PVQVTGI 769

Query: 117  DQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVK 176
              V   A  + G V  A   DG++W WG +  GQLG  +  T + VP +V  L+  + V 
Sbjct: 770  TDVESVATTSGGAV-YAKRTDGTVWAWGNNAYGQLG-NRTTTNSAVPVQVTGLSDVQTVT 827

Query: 177  VSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIE 236
             S     A A   DG ++ WG +  G++G    A +SSP  + I   + +    + S + 
Sbjct: 828  ASEE-ESAFAIKADGTVWAWGANWGGQLGAGHYANQSSP--AQIPELTGAKSITTGSGVY 884

Query: 237  KAQKLVSEGMEK---------------EKYMPIIWEPFLVEGV-EVVDIACGFDHSLVLG 280
             A  ++++G  +                   P+   P  V G+ ++  +      ++ L 
Sbjct: 885  VAYAVMADGSVRAWGDNSSGKLGNGSTATTSPV---PVQVVGLTDITSVKSSGGAAIALK 941

Query: 281  RNGVLLSCGSNVYGQLGREKQ-DMGMFPVDINFHPVSISSGLGHSLAICEVRSSNVTGGA 339
             +G + + GSN +G+LG          PV +N        GL    +I   RS+++    
Sbjct: 942  LDGTVWAWGSNGWGELGNGSYGSYSSVPVRVN--------GLSDVASIEAKRSASIYALR 993

Query: 340  RGIVSWGWNRSSQ----LGRMGPDNVPLVVEGL 368
            +   +W W  + Q    +G   P   P+ V GL
Sbjct: 994  KDGTTWAWGANLQGELGIGSTTPSPTPVQVTGL 1026



 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 79/282 (28%), Positives = 127/282 (45%), Gaps = 54/282 (19%)

Query: 28   AVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWA 87
            +V ++GD S G LG  ++ T     +  P +V GL +D+TSV +    ++A+  +G VWA
Sbjct: 894  SVRAWGDNSSGKLGNGSTAT----TSPVPVQVVGL-TDITSVKSSGGAAIALKLDGTVWA 948

Query: 88   WGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSK 147
            WG N   +LG G+  S +  + P RV GL  V    A  S  +  A+  DG+ W WG + 
Sbjct: 949  WGSNGWGELGNGSYGSYS--SVPVRVNGLSDVASIEAKRSASIY-ALRKDGTTWAWGANL 1005

Query: 148  RGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNL 207
            +G+LG+G   T +  P +V  L+ + +  ++ G+    A  +DG ++ WG++  G++GN 
Sbjct: 1006 QGELGIGS-TTPSPTPVQVTGLS-QTLSIITNGYSSVHALQKDGTVWAWGWNGYGQLGN- 1062

Query: 208  GKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVV 267
                 ++  DS                                     W P   +G+  V
Sbjct: 1063 -----ATTTDS-------------------------------------WVPGRAQGISDV 1080

Query: 268  DIACGFDHS-LVLGRNGVLLSCGSNVYGQLGREKQDMGMFPV 308
                  D S   L  +G LL+ G+N +GQLG         PV
Sbjct: 1081 RQLMTTDGSAYALKADGSLLAWGNNEFGQLGIGTTTNATVPV 1122



 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 103/371 (27%), Positives = 158/371 (42%), Gaps = 53/371 (14%)

Query: 19   IFMRSASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHS-L 77
            ++ +   GT V ++G+ + G LG  T+      ++  P +V GL SDV +V+A    S  
Sbjct: 783  VYAKRTDGT-VWAWGNNAYGQLGNRTTT-----NSAVPVQVTGL-SDVQTVTASEEESAF 835

Query: 78   AVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDD 137
            A+  +G VWAWG N   QLG G   ++++   P ++  L         +   V+ A+  D
Sbjct: 836  AIKADGTVWAWGANWGGQLGAGHYANQSS---PAQIPELTGAKSITTGSGVYVAYAVMAD 892

Query: 138  GSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWG 197
            GS+  WG +  G+LG G   T + VP +V  L    I  V    G A+A   DG ++ WG
Sbjct: 893  GSVRAWGDNSSGKLGNGSTATTSPVPVQVVGL--TDITSVKSSGGAAIALKLDGTVWAWG 950

Query: 198  YSADGRIGNLGKALESS-PLDSNIDRSSESDQEISSSTIEKAQK----------LVSE-G 245
             +  G +GN      SS P+  N      S +   S++I   +K          L  E G
Sbjct: 951  SNGWGELGNGSYGSYSSVPVRVNGLSDVASIEAKRSASIYALRKDGTTWAWGANLQGELG 1010

Query: 246  MEKEKYMPIIWEPFLVEGVE--VVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDM 303
            +      P    P  V G+   +  I  G+     L ++G + + G N YGQLG      
Sbjct: 1011 IGSTTPSPT---PVQVTGLSQTLSIITNGYSSVHALQKDGTVWAWGWNGYGQLGNATTTD 1067

Query: 304  GMFPVDINFHPVSISSGLGHSLAICEVRSSNVTGGAR-------GIVSWGWNRSSQLGRM 356
               P              G +  I +VR    T G+         +++WG N   QLG  
Sbjct: 1068 SWVP--------------GRAQGISDVRQLMTTDGSAYALKADGSLLAWGNNEFGQLGIG 1113

Query: 357  GPDN--VPLVV 365
               N  VP++V
Sbjct: 1114 TTTNATVPVLV 1124



 Score = 52.0 bits (123), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 37/131 (28%), Positives = 65/131 (49%), Gaps = 6/131 (4%)

Query: 103 SRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIV 162
           SR   + P  V       + A  AS   + A+ +DG++W WG++  GQLG G   T++  
Sbjct: 704 SRTALSAPLTVAPAGLAGIKAVSASHSAAYALRNDGTVWAWGRNNAGQLGNGA-TTDSAA 762

Query: 163 PSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLD----S 218
           P +V  +   + V  + G G   A+  DG ++ WG +A G++GN      + P+     S
Sbjct: 763 PVQVTGITDVESVATTSG-GAVYAKRTDGTVWAWGNNAYGQLGNRTTTNSAVPVQVTGLS 821

Query: 219 NIDRSSESDQE 229
           ++   + S++E
Sbjct: 822 DVQTVTASEEE 832


>gi|421113392|ref|ZP_15573836.1| chromosome condensation regulator RCC1 repeat protein [Leptospira
           santarosai str. JET]
 gi|410801166|gb|EKS07340.1| chromosome condensation regulator RCC1 repeat protein [Leptospira
           santarosai str. JET]
          Length = 506

 Score = 92.0 bits (227), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 86/300 (28%), Positives = 143/300 (47%), Gaps = 24/300 (8%)

Query: 21  MRSASGTAVVSFGDGSQGALGLPTSLTGV---GGDAYEPTRVPGLPSDVTSVSAGHYHSL 77
           M  A    V ++G+ ++G LG+  +        GD   PT VPG+  D    + G  H+L
Sbjct: 193 MAIAKNGRVYTWGNNAKGQLGIGNNNNPNPKEAGDRLPPTLVPGI-DDAVMGAYGFNHAL 251

Query: 78  AVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDD 137
            + ++G + ++G+NN  QLG G +           V  ++  +V    A    S+A+ ++
Sbjct: 252 ILKSDGTLVSFGQNNVGQLGNGEVNLNVNSFSTNPVAVVNLRDVIQVIAGSEHSAALTEN 311

Query: 138 GSLWVWGKSKRGQLGLGKDITEAIV---PSRVEALAGEKIVKVSFGWGHALAQTEDGKLF 194
           G ++VWGK++ G LG G+      V   P +VE L+G  I +++ G  H LA   DGK++
Sbjct: 312 GEVYVWGKNQYGNLGNGRLSAANTVQSTPVKVEGLSG--IKQIANGRDHILALASDGKIY 369

Query: 195 GWGYSADGRIGNLGKALES-SPLDSNI----DRSSESDQEISSSTIEKAQKLVSEGME-- 247
            WG +A G++G  G    + +P+ + +    + SS       S +I K+ ++   G    
Sbjct: 370 SWGLNASGQLGIGGSGFPNPTPIPTQVLNITNASSVWAGGTQSFSILKSGEVKGWGANGN 429

Query: 248 ------KEKYMPIIWEPF-LVEGVE-VVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGRE 299
                  E     ++EP   V G+E V+   CG  H+  L  NG +   G N  G LGR+
Sbjct: 430 TANLAIGETNTSKVYEPNKAVVGIENVIHFGCGATHNFALLGNGEIYGWGWNFKGSLGRQ 489



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 83/315 (26%), Positives = 131/315 (41%), Gaps = 59/315 (18%)

Query: 67  TSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQV-NVCAAF 125
           T +SAG  HS     NG V+  GRNN  QLG G        N+   +  LD + ++ +  
Sbjct: 131 TKLSAGAAHS-GFLKNGNVYTVGRNNFGQLGTGHSTGD---NNNDVIVLLDSIRDIFSIH 186

Query: 126 ASGVVSSAIGDDGSLWVWGKSKRGQLGLG-------KDITEAIVPSRVEALAGEKIVKVS 178
            +   S AI  +G ++ WG + +GQLG+G       K+  + + P+ V  +  +  V  +
Sbjct: 187 FNQNNSMAIAKNGRVYTWGNNAKGQLGIGNNNNPNPKEAGDRLPPTLVPGI--DDAVMGA 244

Query: 179 FGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKA 238
           +G+ HAL    DG L  +G +  G++GN          + N++ +S S   ++       
Sbjct: 245 YGFNHALILKSDGTLVSFGQNNVGQLGN---------GEVNLNVNSFSTNPVA------- 288

Query: 239 QKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGR 298
                                +V   +V+ +  G +HS  L  NG +   G N YG LG 
Sbjct: 289 ---------------------VVNLRDVIQVIAGSEHSAALTENGEVYVWGKNQYGNLGN 327

Query: 299 EKQDMGMFPVDINFHPVSISSGLGHSLAICEVRSSNVTGGARG-IVSWGWNRSSQLGRMG 357
            +         +   PV +  GL     I   R   +   + G I SWG N S QLG  G
Sbjct: 328 GRLSAAN---TVQSTPVKV-EGLSGIKQIANGRDHILALASDGKIYSWGLNASGQLGIGG 383

Query: 358 ---PDNVPLVVEGLE 369
              P+  P+  + L 
Sbjct: 384 SGFPNPTPIPTQVLN 398



 Score = 58.9 bits (141), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 63/242 (26%), Positives = 102/242 (42%), Gaps = 51/242 (21%)

Query: 65  DVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWN-----DPKRVEGLDQV 119
           D+ S+     +S+A+  NG V+ WG N + QLG G   +           P  V G+D  
Sbjct: 181 DIFSIHFNQNNSMAIAKNGRVYTWGNNAKGQLGIGNNNNPNPKEAGDRLPPTLVPGIDDA 240

Query: 120 NVCA-AFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKD--ITEAIVPSRVEALAGEKIVK 176
            + A  F   ++   +  DG+L  +G++  GQLG G+      +   + V  +    +++
Sbjct: 241 VMGAYGFNHALI---LKSDGTLVSFGQNNVGQLGNGEVNLNVNSFSTNPVAVVNLRDVIQ 297

Query: 177 VSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIE 236
           V  G  H+ A TE+G+++ WG +  G +GN G+   ++ + S                  
Sbjct: 298 VIAGSEHSAALTENGEVYVWGKNQYGNLGN-GRLSAANTVQS------------------ 338

Query: 237 KAQKLVSEGMEKEKYMPIIWEPFLVEGVE-VVDIACGFDHSLVLGRNGVLLSCGSNVYGQ 295
                                P  VEG+  +  IA G DH L L  +G + S G N  GQ
Sbjct: 339 --------------------TPVKVEGLSGIKQIANGRDHILALASDGKIYSWGLNASGQ 378

Query: 296 LG 297
           LG
Sbjct: 379 LG 380



 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 65/262 (24%), Positives = 111/262 (42%), Gaps = 62/262 (23%)

Query: 125 FASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHA 184
            ++G   S    +G+++  G++  GQLG G    +      V   +   I  + F   ++
Sbjct: 133 LSAGAAHSGFLKNGNVYTVGRNNFGQLGTGHSTGDNNNDVIVLLDSIRDIFSIHFNQNNS 192

Query: 185 LAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSE 244
           +A  ++G+++ WG +A G++G +G     +P ++  DR                      
Sbjct: 193 MAIAKNGRVYTWGNNAKGQLG-IGNNNNPNPKEAG-DR---------------------- 228

Query: 245 GMEKEKYMPIIWEPFLVEGVE-VVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDM 303
                  +P    P LV G++  V  A GF+H+L+L  +G L+S G N  GQLG  + ++
Sbjct: 229 -------LP----PTLVPGIDDAVMGAYGFNHALILKSDGTLVSFGQNNVGQLGNGEVNL 277

Query: 304 GMFPVDINFHPVSIS---------SGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQL- 353
            +     N  PV++          +G  HS A+ E            +  WG N+   L 
Sbjct: 278 NVNSFSTN--PVAVVNLRDVIQVIAGSEHSAALTENGE---------VYVWGKNQYGNLG 326

Query: 354 -GRMGPDN----VPLVVEGLEG 370
            GR+   N     P+ VEGL G
Sbjct: 327 NGRLSAANTVQSTPVKVEGLSG 348


>gi|350580248|ref|XP_003122992.3| PREDICTED: secretion-regulating guanine nucleotide exchange factor
           isoform 1 [Sus scrofa]
          Length = 458

 Score = 92.0 bits (227), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 96/313 (30%), Positives = 138/313 (44%), Gaps = 43/313 (13%)

Query: 29  VVSFGDGSQGALGLPT-SLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWA 87
           V+S G  S G LG+P      V   A E  R       V S++AG  H+LA T +G V+ 
Sbjct: 122 VLSCGSNSFGQLGVPHGPRRCVVPQAIEVQR-----EKVVSIAAGLRHALAATASGLVFQ 176

Query: 88  WGR---NNEVQLGRG-ALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVW 143
           WG    ++  +L  G  L    T  +P +V GL+        A    S+++ D G L+VW
Sbjct: 177 WGTGLASSGRRLCPGQTLPLFLTAKEPSKVTGLENSQAVCVLAGSGHSASLTDAGELYVW 236

Query: 144 GKSKRGQLGLGKDITEAIVPSRVEA--LAGEKIVKVSFGWGHALAQTEDGKLFGWGYSAD 201
           G +K GQL          +P ++EA     EK+  V  GW H +AQTE GK+F WG  AD
Sbjct: 237 GSNKHGQLA--SQAAFLPLPQKIEAHRFQNEKVAAVWSGWTHLVAQTETGKVFTWGR-AD 293

Query: 202 GRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLV 261
              G LG+ LES           +  ++ SS    +  + V   +           P L 
Sbjct: 294 --YGQLGRTLES-------PEGWKPKKQASSLPCSRPARSVPSSL-----------PCLT 333

Query: 262 EGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFHPVS----I 317
              EV   +CG +H+L +   G   S G N +G  G   +     P  +     S    +
Sbjct: 334 GATEV---SCGSEHNLAV-VGGTCYSWGWNEHGMCGDGTEANVWTPKPVQALRSSSGLRL 389

Query: 318 SSGLGHSLAICEV 330
             G GHSLA+C++
Sbjct: 390 GCGAGHSLALCQL 402



 Score = 68.6 bits (166), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 101/393 (25%), Positives = 153/393 (38%), Gaps = 69/393 (17%)

Query: 27  TAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGL--PSDVTSVSAGHYHSLAVTNNGA 84
           TA+ ++G  S G LGL     G   D   P ++     P  V  ++ G  HS  VT+ G+
Sbjct: 15  TALFAWGANSYGQLGL-----GHKEDVLLPQQLSEFCKPGCVKRITGGGGHSAIVTDQGS 69

Query: 85  VWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWG 144
           ++  G N + QLG G  E    +   K + G     V   +   ++   +  +G +   G
Sbjct: 70  LFVCGLNKDGQLGLGHTEDVLYFTLCKSLLGCPIQQVACGWDFTII---LTKNGQVLSCG 126

Query: 145 KSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGW--GYSADG 202
            +  GQLG+       +VP  +E +  EK+V ++ G  HALA T  G +F W  G ++ G
Sbjct: 127 SNSFGQLGVPHGPRRCVVPQAIE-VQREKVVSIAAGLRHALAATASGLVFQWGTGLASSG 185

Query: 203 RIGNLGKALESSPLDSNIDRSS-----ESDQEIS-------SSTIEKAQKLVSEGMEKE- 249
           R    G+ L   PL       S     E+ Q +        S+++  A +L   G  K  
Sbjct: 186 RRLCPGQTL---PLFLTAKEPSKVTGLENSQAVCVLAGSGHSASLTDAGELYVWGSNKHG 242

Query: 250 ------KYMPIIW--EPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGR--- 298
                  ++P+    E    +  +V  +  G+ H +     G + + G   YGQLGR   
Sbjct: 243 QLASQAAFLPLPQKIEAHRFQNEKVAAVWSGWTHLVAQTETGKVFTWGRADYGQLGRTLE 302

Query: 299 ------EKQDMGMFPVDINFHPV-----------SISSGLGHSLAICEVRSSNVTGGARG 341
                  K+     P       V            +S G  H+LA        V GG   
Sbjct: 303 SPEGWKPKKQASSLPCSRPARSVPSSLPCLTGATEVSCGSEHNLA--------VVGGT-- 352

Query: 342 IVSWGWNRSSQLGRMGPDNV--PLVVEGLEGES 372
             SWGWN     G     NV  P  V+ L   S
Sbjct: 353 CYSWGWNEHGMCGDGTEANVWTPKPVQALRSSS 385


>gi|126328935|ref|XP_001376745.1| PREDICTED: protein RCC2 [Monodelphis domestica]
          Length = 439

 Score = 92.0 bits (227), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 85/294 (28%), Positives = 134/294 (45%), Gaps = 37/294 (12%)

Query: 75  HSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAI 134
           HSL +T  G +W+WGRN + QLG G  +       PK +E L +  + +A      + A+
Sbjct: 77  HSLLITTEGKLWSWGRNEKGQLGHGDTKRVEA---PKLIEVLSKEVIVSAACGRNHTLAL 133

Query: 135 GDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALA-GEKIVKVSFGWGHALAQTEDGKL 193
            + GS++ +G++K GQLGLG   T+AI PS  + +  G+ I K++ G   ++     G L
Sbjct: 134 TETGSVFAFGENKMGQLGLGNQ-TDAI-PSPAQIMYNGQPITKMACGAEFSMIMDCKGNL 191

Query: 194 FGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMP 253
           + +G    G++G+            N D    +  +      E   + V+  +EK K   
Sbjct: 192 YSFGCPEYGQLGH------------NSDGKFIARAQRIEYDCELVPRRVAIFIEKTKDGQ 239

Query: 254 IIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFH 313
           I+  P +V    V D+ACG +H+LVL     + S G   YG+LG  +Q   M P  +   
Sbjct: 240 ILPVPNVV----VRDVACGTNHTLVLDSQKRVFSWGFGGYGRLGHAEQKDEMVPRLVKLF 295

Query: 314 ------PVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPDNV 361
                    I +G   S A+ EV          G+  WG   +S+   M P  V
Sbjct: 296 DFPGRGAAQIYAGYTCSFAVSEV---------GGLFFWGATNTSRESTMYPKAV 340



 Score = 52.0 bits (123), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 52/175 (29%), Positives = 75/175 (42%), Gaps = 30/175 (17%)

Query: 66  VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAF 125
           + S + G  H+LA+T  G+V+A+G N   QLG G      T   P   + +         
Sbjct: 120 IVSAACGRNHTLALTETGSVFAFGENKMGQLGLG----NQTDAIPSPAQIMYNGQPITKM 175

Query: 126 ASGVVSSAIGD-DGSLWVWGKSKRGQLGL---GKDITEA--------IVPSRVEALAGEK 173
           A G   S I D  G+L+ +G  + GQLG    GK I  A        +VP RV A+  EK
Sbjct: 176 ACGAEFSMIMDCKGNLYSFGCPEYGQLGHNSDGKFIARAQRIEYDCELVPRRV-AIFIEK 234

Query: 174 -------------IVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSP 215
                        +  V+ G  H L      ++F WG+   GR+G+  +  E  P
Sbjct: 235 TKDGQILPVPNVVVRDVACGTNHTLVLDSQKRVFSWGFGGYGRLGHAEQKDEMVP 289


>gi|421100544|ref|ZP_15561167.1| chromosome condensation regulator RCC1 repeat protein [Leptospira
           borgpetersenii str. 200901122]
 gi|410796347|gb|EKR98483.1| chromosome condensation regulator RCC1 repeat protein [Leptospira
           borgpetersenii str. 200901122]
          Length = 506

 Score = 92.0 bits (227), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 90/304 (29%), Positives = 149/304 (49%), Gaps = 30/304 (9%)

Query: 21  MRSASGTAVVSFGDGSQGALGLPTSLTG-----VGGDAYEPTRVPGLPSDVTSVSAGHYH 75
           M  A    V ++G+ ++G LG+  + T        G+   PT VPG+  D    + G  H
Sbjct: 191 MAIAKNGRVYTWGNNAKGQLGIGNNNTNPANPRTAGNRQPPTLVPGI-DDAVMGAYGFNH 249

Query: 76  SLAVTNNGAVWAWGRNNEVQLGRGA--LESRATWNDPKRVEGLDQVNVCAAFASGVVSSA 133
           +L + ++G V ++G+NN  QLG GA  L + +   +P  V GL   +V    A    S+A
Sbjct: 250 ALILKSDGTVVSFGQNNVGQLGNGANDLNADSFSMNPVAVVGLK--DVIQVIAGSEHSAA 307

Query: 134 IGDDGSLWVWGKSKRGQLGLGK---DITEAIVPSRVEALAGEKIVKVSFGWGHALAQTED 190
           + ++G ++VWG+++ G LG G+          P +VE L+G  I +++ G  H LA   D
Sbjct: 308 LTENGEVYVWGRNQYGNLGNGRLSAANAAQSTPVKVEGLSG--IKQIANGRDHILALASD 365

Query: 191 GKLFGWGYSADGRIGNLGK-ALESSPLDSNI----DRSSESDQEISSSTIEKAQKLVSEG 245
           GK++ WG +A G++G  G  +   +P+ + +    + SS       S +I K+ ++   G
Sbjct: 366 GKIYSWGLNASGQLGIGGNGSPNPTPIPTQVLNILNASSVWAGGTQSFSILKSGEVKGWG 425

Query: 246 ME--------KEKYMPIIWEPF-LVEGVE-VVDIACGFDHSLVLGRNGVLLSCGSNVYGQ 295
                      E     ++EP   V G++ V+   CG  H+ VL  NG +   G N  G 
Sbjct: 426 ANGNTANLAIGETNTLKVYEPNKAVVGIDNVIHFGCGATHNFVLLGNGEIYGWGWNFKGS 485

Query: 296 LGRE 299
           LGR+
Sbjct: 486 LGRQ 489



 Score = 64.7 bits (156), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 84/321 (26%), Positives = 123/321 (38%), Gaps = 69/321 (21%)

Query: 67  TSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFA 126
           T + AG  HS     NG V+  GRNN  QLG G   S    N+   V+     N+ +   
Sbjct: 129 TKLGAGGAHS-GFLKNGEVYTTGRNNFGQLGTG--NSTGDDNNDVIVKLNSISNIFSIHF 185

Query: 127 SGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITE-------------AIVPSRVEALAGEK 173
           +   S AI  +G ++ WG + +GQLG+G + T               +VP   +A+ G  
Sbjct: 186 NQNNSMAIAKNGRVYTWGNNAKGQLGIGNNNTNPANPRTAGNRQPPTLVPGIDDAVMG-- 243

Query: 174 IVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSS 233
               ++G+ HAL    DG +  +G +  G++GN    L +     N              
Sbjct: 244 ----AYGFNHALILKSDGTVVSFGQNNVGQLGNGANDLNADSFSMN-------------- 285

Query: 234 TIEKAQKLVSEGMEKEKYMPIIWEPFLVEGV-EVVDIACGFDHSLVLGRNGVLLSCGSNV 292
                                   P  V G+ +V+ +  G +HS  L  NG +   G N 
Sbjct: 286 ------------------------PVAVVGLKDVIQVIAGSEHSAALTENGEVYVWGRNQ 321

Query: 293 YGQLGREKQDMGMFPVDINFHPVSISSGLGHSLAICEVRSSNVTGGARG-IVSWGWNRSS 351
           YG LG  +             PV +  GL     I   R   +   + G I SWG N S 
Sbjct: 322 YGNLGNGRLSAANAAQST---PVKV-EGLSGIKQIANGRDHILALASDGKIYSWGLNASG 377

Query: 352 QLGRMG---PDNVPLVVEGLE 369
           QLG  G   P+  P+  + L 
Sbjct: 378 QLGIGGNGSPNPTPIPTQVLN 398



 Score = 61.2 bits (147), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 68/245 (27%), Positives = 105/245 (42%), Gaps = 53/245 (21%)

Query: 64  SDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRG-----ALESRATWN--DPKRVEGL 116
           S++ S+     +S+A+  NG V+ WG N + QLG G         R   N   P  V G+
Sbjct: 178 SNIFSIHFNQNNSMAIAKNGRVYTWGNNAKGQLGIGNNNTNPANPRTAGNRQPPTLVPGI 237

Query: 117 DQVNVCA-AFASGVVSSAIGDDGSLWVWGKSKRGQLGLG-KDITEAIVPSRVEALAGEK- 173
           D   + A  F   ++   +  DG++  +G++  GQLG G  D+          A+ G K 
Sbjct: 238 DDAVMGAYGFNHALI---LKSDGTVVSFGQNNVGQLGNGANDLNADSFSMNPVAVVGLKD 294

Query: 174 IVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSS 233
           +++V  G  H+ A TE+G+++ WG +  G +GN               R S ++   S+ 
Sbjct: 295 VIQVIAGSEHSAALTENGEVYVWGRNQYGNLGN--------------GRLSAANAAQST- 339

Query: 234 TIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVE-VVDIACGFDHSLVLGRNGVLLSCGSNV 292
                                   P  VEG+  +  IA G DH L L  +G + S G N 
Sbjct: 340 ------------------------PVKVEGLSGIKQIANGRDHILALASDGKIYSWGLNA 375

Query: 293 YGQLG 297
            GQLG
Sbjct: 376 SGQLG 380



 Score = 54.7 bits (130), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 62/262 (23%), Positives = 105/262 (40%), Gaps = 60/262 (22%)

Query: 125 FASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHA 184
             +G   S    +G ++  G++  GQLG G    +      V+  +   I  + F   ++
Sbjct: 131 LGAGGAHSGFLKNGEVYTTGRNNFGQLGTGNSTGDDNNDVIVKLNSISNIFSIHFNQNNS 190

Query: 185 LAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSE 244
           +A  ++G+++ WG +A G++G                        I ++    A    + 
Sbjct: 191 MAIAKNGRVYTWGNNAKGQLG------------------------IGNNNTNPANPRTAG 226

Query: 245 GMEKEKYMPIIWEPFLVEGVE-VVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDM 303
             +          P LV G++  V  A GF+H+L+L  +G ++S G N  GQLG    D+
Sbjct: 227 NRQ---------PPTLVPGIDDAVMGAYGFNHALILKSDGTVVSFGQNNVGQLGNGANDL 277

Query: 304 GMFPVDINFHPVSIS---------SGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQL- 353
                 +N  PV++          +G  HS A+ E            +  WG N+   L 
Sbjct: 278 NADSFSMN--PVAVVGLKDVIQVIAGSEHSAALTENGE---------VYVWGRNQYGNLG 326

Query: 354 -GRMGPDN----VPLVVEGLEG 370
            GR+   N     P+ VEGL G
Sbjct: 327 NGRLSAANAAQSTPVKVEGLSG 348


>gi|148700108|gb|EDL32055.1| hect domain and RLD 4, isoform CRA_e [Mus musculus]
          Length = 928

 Score = 92.0 bits (227), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 63/245 (25%), Positives = 113/245 (46%), Gaps = 43/245 (17%)

Query: 55  EPTRVPGLPS-DVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRV 113
           +P +V  L + ++ +V+ G  H+LA+ + G V+AWG +++ QLG     S      P+ +
Sbjct: 74  KPEQVVALDAQNIVAVACGEAHTLALNDKGQVYAWGLDSDGQLGLQG--SEECIRVPRNI 131

Query: 114 EGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEK 173
           + L  + +         S A+     ++ WG++K GQLGLG D  +   P  +++L G  
Sbjct: 132 KSLSDIQIVQVACGYYHSLALSKASEVFCWGQNKYGQLGLGIDCQKQTSPQLIKSLLGIP 191

Query: 174 IVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSS 233
            ++V+ G  H+   T  G +FGWG +  G++G          L+                
Sbjct: 192 FMQVAAGGAHSFVLTLSGAIFGWGRNKFGQLG----------LND--------------- 226

Query: 234 TIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVY 293
                        E ++Y+P + +   +   ++V I CG DH+  L + G + + G+  Y
Sbjct: 227 -------------ENDRYVPNLLKS--LRSQKIVYICCGEDHTAALTKEGGVFTFGAGGY 271

Query: 294 GQLGR 298
           GQLG 
Sbjct: 272 GQLGH 276



 Score = 81.3 bits (199), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 58/188 (30%), Positives = 96/188 (51%), Gaps = 8/188 (4%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPS-DVTSVSAGHYHSLAVTNNGAVWA 87
           V ++G  S G LGL  S   +      P  +  L    +  V+ G+YHSLA++    V+ 
Sbjct: 105 VYAWGLDSDGQLGLQGSEECIR----VPRNIKSLSDIQIVQVACGYYHSLALSKASEVFC 160

Query: 88  WGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSK 147
           WG+N   QLG G    + T   P+ ++ L  +      A G  S  +   G+++ WG++K
Sbjct: 161 WGQNKYGQLGLGIDCQKQT--SPQLIKSLLGIPFMQVAAGGAHSFVLTLSGAIFGWGRNK 218

Query: 148 RGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNL 207
            GQLGL  D  +  VP+ +++L  +KIV +  G  H  A T++G +F +G    G++G+ 
Sbjct: 219 FGQLGLN-DENDRYVPNLLKSLRSQKIVYICCGEDHTAALTKEGGVFTFGAGGYGQLGHN 277

Query: 208 GKALESSP 215
             + E +P
Sbjct: 278 STSHEINP 285



 Score = 69.3 bits (168), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 70/295 (23%), Positives = 120/295 (40%), Gaps = 59/295 (20%)

Query: 85  VWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWG 144
           +  WG  +  QLG G ++      +P+R +      V         +  + DDG+++  G
Sbjct: 1   MLCWGNASYGQLGLGGIDEEIVL-EPRRSDFFVNKKVRDVGCGLRHTVFVLDDGTVYTCG 59

Query: 145 KSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRI 204
            +  GQLG  K   +   P +V AL  + IV V+ G  H LA  + G+++ WG  +DG++
Sbjct: 60  CNDLGQLGHEKSRKK---PEQVVALDAQNIVAVACGEAHTLALNDKGQVYAWGLDSDGQL 116

Query: 205 GNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGV 264
           G  G   E   +  NI   S+                                      +
Sbjct: 117 GLQGSE-ECIRVPRNIKSLSD--------------------------------------I 137

Query: 265 EVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLG-----REKQDMGMFPVDINFHPVSISS 319
           ++V +ACG+ HSL L +   +   G N YGQLG     +++    +    +    + +++
Sbjct: 138 QIVQVACGYYHSLALSKASEVFCWGQNKYGQLGLGIDCQKQTSPQLIKSLLGIPFMQVAA 197

Query: 320 GLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPDN--VPLVVEGLEGES 372
           G  HS  +          GA  I  WG N+  QLG    ++  VP +++ L  + 
Sbjct: 198 GGAHSFVL-------TLSGA--IFGWGRNKFGQLGLNDENDRYVPNLLKSLRSQK 243


>gi|158286476|ref|XP_308776.4| AGAP006994-PA [Anopheles gambiae str. PEST]
 gi|157020486|gb|EAA04764.5| AGAP006994-PA [Anopheles gambiae str. PEST]
          Length = 1055

 Score = 92.0 bits (227), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 82/318 (25%), Positives = 133/318 (41%), Gaps = 55/318 (17%)

Query: 56  PTRVPGLPSDV-TSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVE 114
           P R+  L + + T +S G  HSLA+TN G V++WG N   QLG  A   R     P+ ++
Sbjct: 80  PQRLTSLENYIITCISCGTAHSLALTNWGQVFSWGSNAVGQLGHDAENGRQP--TPRMIK 137

Query: 115 GLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKI 174
            +   +V    +      A+ ++G L+ WG +  GQLG+G    +  +P+ +++LAG  I
Sbjct: 138 AIGAKHVVQIASGQYHCLALTNNGELYAWGSNSYGQLGIGTTSEKVPMPTLIQSLAGVPI 197

Query: 175 VKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSST 234
             ++ G  H+ A ++ G +FGWG +  G++G         P      RS           
Sbjct: 198 AFIACGGNHSFAVSKSGAIFGWGKNTFGQLGLNDLNSRCYPTQLRTLRS----------- 246

Query: 235 IEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYG 294
                                        + V  I+CG D S+ L   G + +CG+  +G
Sbjct: 247 -----------------------------LGVRYISCGDDFSVFLTNEGGVFTCGAGTFG 277

Query: 295 QLGREKQDMGMFPVDINFHPV-----SISSGLGHSLAICEVRSSNVTGGARGIVSWGWNR 349
           QLG       + P  + F  +      I+ G  H+LA    R      G  G+   G   
Sbjct: 278 QLGHGSCSNEIVPRKV-FELMGSKITQIACGRRHTLAFVPSRGKIYGFGLGGVGQLG--- 333

Query: 350 SSQLGRMGPDNVPLVVEG 367
              +G +G  + P +V G
Sbjct: 334 ---IGMVGNHSTPQIVRG 348



 Score = 87.8 bits (216), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 71/288 (24%), Positives = 122/288 (42%), Gaps = 53/288 (18%)

Query: 28  AVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVP-----GLPSDVTSVSAGHYHSLAVTNN 82
           A+  +G+ + G LGL       GG   E   VP         +V  V  G  H+L +T  
Sbjct: 2   AIYCWGNTAHGELGL-------GGIEEEQVMVPRKMDWSQADEVVRVECGTSHTLFLTKE 54

Query: 83  GAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWV 142
           G ++A G N+  QLG   L++      P+R+  L+   +         S A+ + G ++ 
Sbjct: 55  GKMYACGNNDHGQLGHD-LDTLPN-KRPQRLTSLENYIITCISCGTAHSLALTNWGQVFS 112

Query: 143 WGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADG 202
           WG +  GQLG   +      P  ++A+  + +V+++ G  H LA T +G+L+ WG ++ G
Sbjct: 113 WGSNAVGQLGHDAENGRQPTPRMIKAIGAKHVVQIASGQYHCLALTNNGELYAWGSNSYG 172

Query: 203 RIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVE 262
           ++G +G   E  P+ + I                                        + 
Sbjct: 173 QLG-IGTTSEKVPMPTLIQS--------------------------------------LA 193

Query: 263 GVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDI 310
           GV +  IACG +HS  + ++G +   G N +GQLG    +   +P  +
Sbjct: 194 GVPIAFIACGGNHSFAVSKSGAIFGWGKNTFGQLGLNDLNSRCYPTQL 241



 Score = 72.4 bits (176), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 68/246 (27%), Positives = 114/246 (46%), Gaps = 15/246 (6%)

Query: 2   RLLKSVVHNHVNVLTSRIF--MRSASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRV 59
           R++K++   HV  + S  +  +   +   + ++G  S G LG+ T+   V      PT +
Sbjct: 134 RMIKAIGAKHVVQIASGQYHCLALTNNGELYAWGSNSYGQLGIGTTSEKVP----MPTLI 189

Query: 60  PGLPS-DVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQ 118
             L    +  ++ G  HS AV+ +GA++ WG+N   QLG   L SR     P ++  L  
Sbjct: 190 QSLAGVPIAFIACGGNHSFAVSKSGAIFGWGKNTFGQLGLNDLNSRCY---PTQLRTLRS 246

Query: 119 VNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVS 178
           + V         S  + ++G ++  G    GQLG G   +  IVP +V  L G KI +++
Sbjct: 247 LGVRYISCGDDFSVFLTNEGGVFTCGAGTFGQLGHGS-CSNEIVPRKVFELMGSKITQIA 305

Query: 179 FGWGHALAQTED-GKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEK 237
            G  H LA     GK++G+G    G +G LG  +  +     I R      +  SS  ++
Sbjct: 306 CGRRHTLAFVPSRGKIYGFGL---GGVGQLGIGMVGNHSTPQIVRGPWFKTDFKSSDCDE 362

Query: 238 AQKLVS 243
            Q +V+
Sbjct: 363 TQIIVN 368



 Score = 62.0 bits (149), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 57/223 (25%), Positives = 97/223 (43%), Gaps = 56/223 (25%)

Query: 139 SLWVWGKSKRGQLGLG-KDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWG 197
           +++ WG +  G+LGLG  +  + +VP +++    +++V+V  G  H L  T++GK++  G
Sbjct: 2   AIYCWGNTAHGELGLGGIEEEQVMVPRKMDWSQADEVVRVECGTSHTLFLTKEGKMYACG 61

Query: 198 YSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWE 257
            +  G++G+                      ++ +   ++ Q+L S              
Sbjct: 62  NNDHGQLGH----------------------DLDTLPNKRPQRLTS-------------- 85

Query: 258 PFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINF----- 312
              +E   +  I+CG  HSL L   G + S GSN  GQLG + ++ G  P          
Sbjct: 86  ---LENYIITCISCGTAHSLALTNWGQVFSWGSNAVGQLGHDAEN-GRQPTPRMIKAIGA 141

Query: 313 -HPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLG 354
            H V I+SG  H LA+          G   + +WG N   QLG
Sbjct: 142 KHVVQIASGQYHCLAL-------TNNGE--LYAWGSNSYGQLG 175



 Score = 47.0 bits (110), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 33/97 (34%), Positives = 49/97 (50%), Gaps = 16/97 (16%)

Query: 265 EVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGRE------KQDMGMFPVDINFHPVSIS 318
           EVV + CG  H+L L + G + +CG+N +GQLG +      K+   +  ++ N+    IS
Sbjct: 37  EVVRVECGTSHTLFLTKEGKMYACGNNDHGQLGHDLDTLPNKRPQRLTSLE-NYIITCIS 95

Query: 319 SGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGR 355
            G  HSLA+        T   + + SWG N   QLG 
Sbjct: 96  CGTAHSLAL--------TNWGQ-VFSWGSNAVGQLGH 123


>gi|355752291|gb|EHH56411.1| Guanine nucleotide exchange factor-related protein [Macaca
           fascicularis]
          Length = 458

 Score = 92.0 bits (227), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 93/317 (29%), Positives = 137/317 (43%), Gaps = 51/317 (16%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAW 88
           V+S G  S G LG+P  L         P  +      V  ++AG  H+LA T +G V+ W
Sbjct: 122 VLSCGSNSFGQLGVPHGLR----RCVVPQAIELHKEKVVCIAAGLRHALAATASGIVFQW 177

Query: 89  GRNNEVQLGRGALESRA-----TWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVW 143
           G       GR     +      T  +P RV GL+        A    S+++ D G ++VW
Sbjct: 178 G-TGLASCGRRLCPGQTLPLFFTAKEPSRVTGLENSKAMCVLAGSDHSASLTDAGEVYVW 236

Query: 144 GKSKRGQLGLGKDITEAI---VPSRVEA--LAGEKIVKVSFGWGHALAQTEDGKLFGWGY 198
           G +K GQL      TEA    VP ++EA     EK+  V  GW H +AQTE GK+F WG 
Sbjct: 237 GSNKHGQLA-----TEAAFLPVPQKIEAHCFQNEKVTAVWSGWTHLVAQTETGKVFTWGR 291

Query: 199 SADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEP 258
           +  G++G   +  E   L+                T     +L++        MP     
Sbjct: 292 ADYGQLGRKLETYEGWKLEKQ-------------DTFLPCSRLLNN-------MPSSLHC 331

Query: 259 FLVEGVEVVDIACGFDHSL-VLGRNGVLLSCGSNVYGQL--GREKQDMGMFPVD--INFH 313
                    +++CG +H+L V+G  GV  S G N +G    G E       PV   ++  
Sbjct: 332 L----TGATEVSCGSEHNLAVIG--GVCYSWGWNEHGMCGDGTEANIWAPKPVQALLSSS 385

Query: 314 PVSISSGLGHSLAICEV 330
            + +  G GHSLA+C++
Sbjct: 386 GLLVGCGAGHSLALCQL 402



 Score = 70.1 bits (170), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 98/380 (25%), Positives = 154/380 (40%), Gaps = 55/380 (14%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGL--PSDVTSVSAGHYHSLAVTNNGAVW 86
           + ++G  S G LGL     G   D   P ++     P  V  ++ G  HS  VT+ G ++
Sbjct: 17  LFAWGANSYGQLGL-----GHKEDVLLPQQLNDFCKPRSVRRITGGGGHSAVVTDIGDLF 71

Query: 87  AWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKS 146
             G N + QLG G  E    +   K + G     V   +   ++   + ++G +   G +
Sbjct: 72  VCGLNKDGQLGLGHTEDIPYFTPCKSLFGCPIQQVACGWDFTII---LTENGQVLSCGSN 128

Query: 147 KRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGW--GYSADGRI 204
             GQLG+   +   +VP  +E L  EK+V ++ G  HALA T  G +F W  G ++ GR 
Sbjct: 129 SFGQLGVPHGLRRCVVPQAIE-LHKEKVVCIAAGLRHALAATASGIVFQWGTGLASCGRR 187

Query: 205 GNLGKALESSPLDSNIDRSS-----ESDQEIS-------SSTIEKAQKLVSEGMEKE--- 249
              G+ L   PL       S     E+ + +        S+++  A ++   G  K    
Sbjct: 188 LCPGQTL---PLFFTAKEPSRVTGLENSKAMCVLAGSDHSASLTDAGEVYVWGSNKHGQL 244

Query: 250 ----KYMPIIW--EPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGR----- 298
                ++P+    E    +  +V  +  G+ H +     G + + G   YGQLGR     
Sbjct: 245 ATEAAFLPVPQKIEAHCFQNEKVTAVWSGWTHLVAQTETGKVFTWGRADYGQLGRKLETY 304

Query: 299 -----EKQDMGMFPVD--INFHPVSISSGLGHSLAIC-EVRSSNVTGGARGIVSWGWNRS 350
                EKQD    P    +N  P S+    G +   C    +  V GG     SWGWN  
Sbjct: 305 EGWKLEKQDT-FLPCSRLLNNMPSSLHCLTGATEVSCGSEHNLAVIGGV--CYSWGWNEH 361

Query: 351 SQLGRMGPDNV--PLVVEGL 368
              G     N+  P  V+ L
Sbjct: 362 GMCGDGTEANIWAPKPVQAL 381


>gi|426231463|ref|XP_004009758.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC3 [Ovis aries]
          Length = 1050

 Score = 91.7 bits (226), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 69/248 (27%), Positives = 115/248 (46%), Gaps = 21/248 (8%)

Query: 66  VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAF 125
           +  V+ G  HSLA+++ G +++WG  ++ QLG    E       P+ ++ L+Q  +    
Sbjct: 86  IVHVACGESHSLALSDQGQLFSWGAGSDGQLGLMTTEDSVAV--PRLIQKLNQQTILQVS 143

Query: 126 ASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHAL 185
                  A+  DG  + WG++  GQLGLGK+      P RV +L G  + +V  G  H+ 
Sbjct: 144 CGNWHCLALAADGQFFTWGRNSHGQLGLGKEFPSQASPQRVRSLEGIPLAQVVAGGAHSF 203

Query: 186 AQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSE----SDQEISSSTIEKAQKL 241
           A +  G +FGWG +  G++G   +    SP    + R+ +    S  E  ++ + K+  +
Sbjct: 204 ALSLSGAVFGWGMNNAGQLGLSDEKDRESPCHVKLLRTQKVVYISCGEEHTAVLTKSGGV 263

Query: 242 VSEG-----------MEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVL-GRNGVLLSCG 289
            + G           M  E     + E   + G EV  IACG  H+L     +G++ + G
Sbjct: 264 FTFGAGSCGQLGHDSMNDEVNPRRVLE---LMGSEVTQIACGRQHTLAFVPSSGLIYAFG 320

Query: 290 SNVYGQLG 297
               GQLG
Sbjct: 321 CGARGQLG 328



 Score = 84.7 bits (208), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 99/340 (29%), Positives = 151/340 (44%), Gaps = 42/340 (12%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSD--VTSVSAGHYHSLAVTNNGAVW 86
           ++ +G  S G  G+  +L GV     EP +V G  SD  V  V+ G  HS+ +  +G V+
Sbjct: 1   MLCWGYWSLGQPGISPNLQGVVA---EP-QVCGFISDRSVKEVACGGNHSVFLLEDGEVY 56

Query: 87  AWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKS 146
             G N + QLG          N P+++  L   ++         S A+ D G L+ WG  
Sbjct: 57  TCGANTKGQLGH-----EREGNKPEQIGALADQHIVHVACGESHSLALSDQGQLFSWGAG 111

Query: 147 KRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGN 206
             GQLGL        VP  ++ L  + I++VS G  H LA   DG+ F WG ++ G++G 
Sbjct: 112 SDGQLGLMTTEDSVAVPRLIQKLNQQTILQVSCGNWHCLALAADGQFFTWGRNSHGQLG- 170

Query: 207 LGK------------ALESSPLDSNIDRSSESDQEISSSTI-----EKAQKLVSEGMEKE 249
           LGK            +LE  PL   +   + S     S  +       A +L   G+  E
Sbjct: 171 LGKEFPSQASPQRVRSLEGIPLAQVVAGGAHSFALSLSGAVFGWGMNNAGQL---GLSDE 227

Query: 250 KYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVD 309
           K         L+   +VV I+CG +H+ VL ++G + + G+   GQLG +  +  + P  
Sbjct: 228 KDRESPCHVKLLRTQKVVYISCGEEHTAVLTKSGGVFTFGAGSCGQLGHDSMNDEVNPRR 287

Query: 310 I----NFHPVSISSGLGHSLAICEVRSSNVT----GGARG 341
           +          I+ G  H+LA   V SS +      GARG
Sbjct: 288 VLELMGSEVTQIACGRQHTLAF--VPSSGLIYAFGCGARG 325


>gi|351542219|ref|NP_001084549.2| regulator of chromosome condensation (RCC1) and BTB (POZ) domain
           containing protein 1 [Xenopus laevis]
          Length = 600

 Score = 91.7 bits (226), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 53/156 (33%), Positives = 92/156 (58%), Gaps = 5/156 (3%)

Query: 62  LPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNV 121
           L   V  V+ G +HS+A+T++G V++WG NN  Q+G G   +++    P++V    Q  V
Sbjct: 196 LSKKVIKVACGSHHSMALTSDGEVFSWGYNNSGQVGSGTTANQSV---PRKVSSSLQSKV 252

Query: 122 CAAFASGVVSS-AIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFG 180
             + A+G  SS AI D+G ++ WG +  GQLGLG +    ++P R+       I++V  G
Sbjct: 253 VVSIAAGQTSSMAITDNGHVYGWGYNGTGQLGLG-NTGNQLMPCRLVFAQPVCIIQVVLG 311

Query: 181 WGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPL 216
           + H+LA ++ G L+ WG ++ G++G   K+ ++ P+
Sbjct: 312 YAHSLALSDQGVLYAWGANSHGQLGIGNKSNQTVPV 347



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 73/274 (26%), Positives = 123/274 (44%), Gaps = 23/274 (8%)

Query: 76  SLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVC-AAFASGVVSSAI 134
           ++  T N  V+ +G N+   LG G  +S      P+R++ L    +   ++ SG      
Sbjct: 104 AIYTTQNNEVFVFGMNSSNCLGTGDNQSAIM---PRRLDVLCGKKIKDLSYGSGPHILLC 160

Query: 135 GDDGSLWVWGKSKRGQLGLGKDITEAIVPSRV-EALAGEKIVKVSFGWGHALAQTEDGKL 193
            +DG ++ WG +   QLG G  I +   P +V   L  +K++KV+ G  H++A T DG++
Sbjct: 161 NEDGEVYSWGHNGYSQLGNGNTI-QGTTPVQVCMELLSKKVIKVACGSHHSMALTSDGEV 219

Query: 194 FGWGYSADGRIGNLGKALESSP------LDSNIDRSSESDQEISSSTIEKAQKL------ 241
           F WGY+  G++G+   A +S P      L S +  S  + Q  S +  +           
Sbjct: 220 FSWGYNNSGQVGSGTTANQSVPRKVSSSLQSKVVVSIAAGQTSSMAITDNGHVYGWGYNG 279

Query: 242 ---VSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGR 298
              +  G    + MP        + V ++ +  G+ HSL L   GVL + G+N +GQLG 
Sbjct: 280 TGQLGLGNTGNQLMPC--RLVFAQPVCIIQVVLGYAHSLALSDQGVLYAWGANSHGQLGI 337

Query: 299 EKQDMGMFPVDINFHPVSISSGLGHSLAICEVRS 332
             +     PV +  +   +     HS  I   +S
Sbjct: 338 GNKSNQTVPVKVGTNERMVEVAACHSTNISAAKS 371


>gi|443715597|gb|ELU07510.1| hypothetical protein CAPTEDRAFT_122289, partial [Capitella teleta]
          Length = 477

 Score = 91.7 bits (226), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 75/289 (25%), Positives = 135/289 (46%), Gaps = 38/289 (13%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSD-VTSVSAGHYHSLAVTNNGAVWA 87
           V +FGD + G LGL     G      +PTR+  L ++ V  V+ G  H+L  T +G +++
Sbjct: 46  VFTFGDNAWGQLGL-----GHTKPVTKPTRIKSLKAEKVHQVACGRSHTLLATESGKIYS 100

Query: 88  WGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSK 147
           +G NN+ QLG G  + +     P  ++GL+   V    A    S  + D GS+++WG  +
Sbjct: 101 FGCNNDRQLGLGLDDEKVC--SPTVIKGLESHAVKMLSAGMYHSCVLTDKGSVYLWGGGE 158

Query: 148 RGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNL 207
            GQLG G+D+T+   P R++    +++V ++ G+ H    T  GKL  +G + +G++G  
Sbjct: 159 EGQLGFGEDVTKHETPERLD--VDDEVVCIACGYYHTALVTAGGKLLTFGETDEGKLGR- 215

Query: 208 GKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEG--------------------ME 247
           G     + L   +D     +  + S     A  +   G                    ++
Sbjct: 216 GSDTGDNCLPKVVD---GIEGHVVSVACGGAHTVAITGWLVYTFGNGSSGQLGHGNMLLQ 272

Query: 248 KEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQL 296
            +    I+W+    +  +V   +CG +H+ ++   G L +CG   +G+L
Sbjct: 273 ADTPHKIVWQ----KPTKVRSASCGENHTALVTDRGQLWTCGDGRHGKL 317



 Score = 69.3 bits (168), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 74/234 (31%), Positives = 114/234 (48%), Gaps = 59/234 (25%)

Query: 131 SSAIGDDGSLWVWGKSKRGQLGLG--KDITEAIVPSRVEALAGEKIVKVSFGWGHALAQT 188
           +S +  DG ++ +G +  GQLGLG  K +T+   P+R+++L  EK+ +V+ G  H L  T
Sbjct: 37  TSLLAGDGRVFTFGDNAWGQLGLGHTKPVTK---PTRIKSLKAEKVHQVACGRSHTLLAT 93

Query: 189 EDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEK-----AQKLVS 243
           E GK++ +G + D ++G LG       LD         D+++ S T+ K     A K++S
Sbjct: 94  ESGKIYSFGCNNDRQLG-LG-------LD---------DEKVCSPTVIKGLESHAVKMLS 136

Query: 244 EGMEK-----EKYMPIIW--------------------EPFLVEGVEVVDIACGFDHSLV 278
            GM       +K    +W                    E   V+  EVV IACG+ H+ +
Sbjct: 137 AGMYHSCVLTDKGSVYLWGGGEEGQLGFGEDVTKHETPERLDVDD-EVVCIACGYYHTAL 195

Query: 279 LGRNGVLLSCGSNVYGQLGREKQDMG--MFP--VD-INFHPVSISSGLGHSLAI 327
           +   G LL+ G    G+LGR   D G    P  VD I  H VS++ G  H++AI
Sbjct: 196 VTAGGKLLTFGETDEGKLGR-GSDTGDNCLPKVVDGIEGHVVSVACGGAHTVAI 248



 Score = 54.7 bits (130), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 52/181 (28%), Positives = 84/181 (46%), Gaps = 14/181 (7%)

Query: 28  AVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWA 87
           +V  +G G +G LG    +T      +E      +  +V  ++ G+YH+  VT  G +  
Sbjct: 150 SVYLWGGGEEGQLGFGEDVT-----KHETPERLDVDDEVVCIACGYYHTALVTAGGKLLT 204

Query: 88  WGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSL-WVWGKS 146
           +G  +E +LGRG+         PK V+G++  +V +    G  + AI   G L + +G  
Sbjct: 205 FGETDEGKLGRGSDTGDNCL--PKVVDGIEG-HVVSVACGGAHTVAI--TGWLVYTFGNG 259

Query: 147 KRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGN 206
             GQLG G  + +A  P ++      K+   S G  H    T+ G+L+  G   DGR G 
Sbjct: 260 SSGQLGHGNMLLQADTPHKIVWQKPTKVRSASCGENHTALVTDRGQLWTCG---DGRHGK 316

Query: 207 L 207
           L
Sbjct: 317 L 317



 Score = 40.8 bits (94), Expect = 0.95,   Method: Compositional matrix adjust.
 Identities = 36/129 (27%), Positives = 59/129 (45%), Gaps = 10/129 (7%)

Query: 248 KEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFP 307
           K K+       F +   +V+ I+CG +H+ +L  +G + + G N +GQLG         P
Sbjct: 9   KSKFADNAPSKFWIREDKVLHISCGDEHTSLLAGDGRVFTFGDNAWGQLGLGHTKPVTKP 68

Query: 308 VDINFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPDN----VPL 363
             I     S+ +   H +A     +   T   + I S+G N   QLG +G D+     P 
Sbjct: 69  TRIK----SLKAEKVHQVACGRSHTLLATESGK-IYSFGCNNDRQLG-LGLDDEKVCSPT 122

Query: 364 VVEGLEGES 372
           V++GLE  +
Sbjct: 123 VIKGLESHA 131


>gi|30682540|ref|NP_680156.2| regulator of chromosome condensation repeat-containing protein
           [Arabidopsis thaliana]
 gi|26452773|dbj|BAC43467.1| unknown protein [Arabidopsis thaliana]
 gi|28973187|gb|AAO63918.1| putative UVB-resistance protein UVR8 [Arabidopsis thaliana]
 gi|332003957|gb|AED91340.1| regulator of chromosome condensation repeat-containing protein
           [Arabidopsis thaliana]
          Length = 434

 Score = 91.7 bits (226), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 113/379 (29%), Positives = 169/379 (44%), Gaps = 60/379 (15%)

Query: 3   LLKSVVHNHVNVLTSRIFMRSASGTAVVSF-GDGSQGALGLPTSLTGVGGDAYEPTRVPG 61
           LLK      + V  SR ++ S SG    +  G G  G LGL     G     + P     
Sbjct: 25  LLKDSKLGPIGVCCSR-WVSSESGKRFAAMWGSGDYGRLGL-----GNLDSQWTPAVCSA 78

Query: 62  LPS-DVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQ-- 118
           L    +T+V+ G  H+L +T    V+A G N+  QLG   ++S A   DP  V GLD+  
Sbjct: 79  LSDHSITAVACGGAHTLFLTETRRVFATGLNDCGQLGVSDVKSHAM--DPLEVSGLDKDI 136

Query: 119 VNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAI-VPSRVEALAGEKIVKV 177
           +++ A +     S+AI  DG L++WGK+  GQLGLGK     + VP++VEAL G  I  V
Sbjct: 137 LHISAGYYH---SAAITVDGELYMWGKNSSGQLGLGKKAARVVRVPTKVEALHGITIQSV 193

Query: 178 SFGWGHALAQTEDGK-------------------LFGWGYSADGRIGNLGKALES---SP 215
           + G  H++A T+ G+                   LFG   S       L K LE    + 
Sbjct: 194 ALGSEHSVAVTDGGEVLSWGGGGSGRLGHGHQSSLFGILRSNSEFTPRLIKELEGIKVTN 253

Query: 216 LDSNIDRSSESDQEISSSTI-EKAQKLVSEGMEKEKYMP-IIWEPFLVEGVEVVDIACGF 273
           + + +  S+ +D+  S+    EK+   +  G  +    P II E    E     ++ACG 
Sbjct: 254 VAAGLLHSACTDENGSAFMFGEKSINKMGFGGVRNATTPSIISEVPYAE-----EVACGG 308

Query: 274 DHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFHPV-----SISSGLGHSLAIC 328
            H+ V+ R G L + GSN  G LG +   +   PV +    +      +S G  H+ AI 
Sbjct: 309 YHTCVVTRGGELYTWGSNENGCLGTDSTYVSHSPVRVEGPFLESTVSQVSCGWKHTAAIS 368

Query: 329 EVRSSNVTGGARGIVSWGW 347
           +            + +WGW
Sbjct: 369 D----------NNVFTWGW 377


>gi|284032915|ref|YP_003382846.1| regulator of chromosome condensation RCC1 [Kribbella flavida DSM
           17836]
 gi|283812208|gb|ADB34047.1| regulator of chromosome condensation RCC1 [Kribbella flavida DSM
           17836]
          Length = 666

 Score = 91.7 bits (226), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 104/326 (31%), Positives = 143/326 (43%), Gaps = 73/326 (22%)

Query: 56  PTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEG 115
           P +V GL S V  ++ GHYHSLA+  +G V AWG N+  QLG GA  S      P  V  
Sbjct: 102 PVQVGGL-SGVVDIAGGHYHSLALLADGTVRAWGYNSFGQLGNGATTSAQ--RTPVAVTP 158

Query: 116 LDQVNVCAAFASGV-VSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKI 174
           L  V    A A G  +S A+  DG++W WG +  GQLG G   T    P RV +LAG  I
Sbjct: 159 LSGV---LAIAGGRDMSYAVRSDGTVWGWGLNTTGQLGDGT-TTMRTRPVRVGSLAG--I 212

Query: 175 VKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSST 234
             +S G  H LA   DG ++ WG +  G++G                             
Sbjct: 213 TAISGGRDHGLAVRSDGTVWAWGDNTQGQVG----------------------------- 243

Query: 235 IEKAQKLVSEGMEKEKYMPIIWEPFLVEGVE-VVDIACGFDHSLVLGRNGVLLSCGSNVY 293
                    +G    +  P+      V GV   V++A G  HS+     G L S G N  
Sbjct: 244 ---------DGSLTNRLAPV-----QVPGVTGAVEVAAGAYHSIARLTGGTLRSWGQNSN 289

Query: 294 GQLG-----REKQDMGMFPVDINFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWN 348
           GQLG     R  Q + +  V       +I++G  HS+A+       V+GGA  + +WG N
Sbjct: 290 GQLGDGTTTRRTQSVAVPGVS---GATAIATGRQHSVAV-------VSGGA--LRAWGSN 337

Query: 349 RSSQLGRMGPDNVP--LVVEGLEGES 372
            + QLG     + P  + V G+ G +
Sbjct: 338 AAGQLGDGTSTDRPNAVTVAGIAGAA 363



 Score = 72.0 bits (175), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 81/293 (27%), Positives = 124/293 (42%), Gaps = 28/293 (9%)

Query: 73  HYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSS 132
           H    A    G+ WAWG N     G G L +  T             NV    A    S 
Sbjct: 18  HQSEAAAVEPGSAWAWGGN-----GTGQLGNGTTTGRGTAAPVTSLTNVTEVEAGREHSI 72

Query: 133 AIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGK 192
           A+  DG++W WG ++ GQLG G   T    P +V  L+G  +V ++ G  H+LA   DG 
Sbjct: 73  ALRSDGTVWTWGFNEMGQLGDGT-ATNRPAPVQVGGLSG--VVDIAGGHYHSLALLADGT 129

Query: 193 LFGWGYSADGRIGNLGKA------LESSPLDSNIDRSSESDQE--ISSSTIEKAQKLVSE 244
           +  WGY++ G++GN          +  +PL   +  +   D    + S        L + 
Sbjct: 130 VRAWGYNSFGQLGNGATTSAQRTPVAVTPLSGVLAIAGGRDMSYAVRSDGTVWGWGLNTT 189

Query: 245 GMEKEKYMPIIWEPFLVEGVE-VVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDM 303
           G   +    +   P  V  +  +  I+ G DH L +  +G + + G N  GQ+G      
Sbjct: 190 GQLGDGTTTMRTRPVRVGSLAGITAISGGRDHGLAVRSDGTVWAWGDNTQGQVGDGSLTN 249

Query: 304 GMFPVDIN--FHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLG 354
            + PV +      V +++G  HS+A        +TGG   + SWG N + QLG
Sbjct: 250 RLAPVQVPGVTGAVEVAAGAYHSIA-------RLTGGT--LRSWGQNSNGQLG 293



 Score = 65.9 bits (159), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 52/152 (34%), Positives = 79/152 (51%), Gaps = 9/152 (5%)

Query: 55  EPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVE 114
            P RV  L + +T++S G  H LAV ++G VWAWG N + Q+G G+L +R     P +V 
Sbjct: 202 RPVRVGSL-AGITAISGGRDHGLAVRSDGTVWAWGDNTQGQVGDGSLTNRLA---PVQVP 257

Query: 115 GLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKI 174
           G+      AA A   ++   G  G+L  WG++  GQLG G   T       V  ++G   
Sbjct: 258 GVTGAVEVAAGAYHSIARLTG--GTLRSWGQNSNGQLGDGT-TTRRTQSVAVPGVSGA-- 312

Query: 175 VKVSFGWGHALAQTEDGKLFGWGYSADGRIGN 206
             ++ G  H++A    G L  WG +A G++G+
Sbjct: 313 TAIATGRQHSVAVVSGGALRAWGSNAAGQLGD 344



 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 54/159 (33%), Positives = 76/159 (47%), Gaps = 16/159 (10%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAW 88
           V ++GD +QG +G   SLT    +   P +VPG+   V  V+AG YHS+A    G + +W
Sbjct: 231 VWAWGDNTQGQVG-DGSLT----NRLAPVQVPGVTGAV-EVAAGAYHSIARLTGGTLRSW 284

Query: 89  GRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSS-AIGDDGSLWVWGKSK 147
           G+N+  QLG G    R       +   +  V+   A A+G   S A+   G+L  WG + 
Sbjct: 285 GQNSNGQLGDGTTTRR------TQSVAVPGVSGATAIATGRQHSVAVVSGGALRAWGSNA 338

Query: 148 RGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALA 186
            GQLG   D T    P+ V         +VS G  H LA
Sbjct: 339 AGQLG---DGTSTDRPNAVTVAGIAGAAEVSAGRDHTLA 374



 Score = 48.1 bits (113), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 65/255 (25%), Positives = 101/255 (39%), Gaps = 37/255 (14%)

Query: 136 DDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFG 195
           + GS W WG +  GQLG G         + V +L    + +V  G  H++A   DG ++ 
Sbjct: 26  EPGSAWAWGGNGTGQLGNGTTTGRGTA-APVTSL--TNVTEVEAGREHSIALRSDGTVWT 82

Query: 196 WGYSADGRIGNLGKALESSP-----LDSNIDRSSE--------SDQEISSSTIEKAQKLV 242
           WG++  G++G+       +P     L   +D +          +D  + +       +L 
Sbjct: 83  WGFNEMGQLGDGTATNRPAPVQVGGLSGVVDIAGGHYHSLALLADGTVRAWGYNSFGQLG 142

Query: 243 SEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQD 302
           +      +  P+   P       V+ IA G D S  +  +G +   G N  GQLG     
Sbjct: 143 NGATTSAQRTPVAVTPL----SGVLAIAGGRDMSYAVRSDGTVWGWGLNTTGQLGDGTTT 198

Query: 303 MGMFPVDINFHP--VSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLG------ 354
           M   PV +       +IS G  H LA   VRS         + +WG N   Q+G      
Sbjct: 199 MRTRPVRVGSLAGITAISGGRDHGLA---VRSDGT------VWAWGDNTQGQVGDGSLTN 249

Query: 355 RMGPDNVPLVVEGLE 369
           R+ P  VP V   +E
Sbjct: 250 RLAPVQVPGVTGAVE 264


>gi|417411454|gb|JAA52162.1| Putative alpha-tubulin suppressor, partial [Desmodus rotundus]
          Length = 534

 Score = 91.7 bits (226), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 54/162 (33%), Positives = 89/162 (54%), Gaps = 5/162 (3%)

Query: 62  LPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNV 121
           L   V  V+ G +HS+A+  +G V+AWG NN  Q+G G+  ++ T   P++V     +  
Sbjct: 133 LIKQVVEVACGSHHSVALAADGEVFAWGYNNCGQVGSGSTANQPT---PRKVTNCLHIKR 189

Query: 122 CAAFASGVVSS-AIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFG 180
               A G  SS A+ D+G ++ WG +  GQLGLG ++ + + P RV AL    + ++  G
Sbjct: 190 VVGIACGQTSSMAVLDNGEVYGWGYNGNGQLGLGNNVNQ-LTPVRVAALHSVCVNQIVCG 248

Query: 181 WGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDR 222
           + H LA T++G L+ WG +  G++G   K    SP    +++
Sbjct: 249 YAHTLALTDEGLLYAWGANTYGQLGTGNKNNLLSPAHIMVEK 290



 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 72/293 (24%), Positives = 118/293 (40%), Gaps = 67/293 (22%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLP-SDVTSVSAGH-YHSLAVTNNGAVW 86
           V  FG      LG     TG       P ++  L    + S+S G   H L  T +G V+
Sbjct: 50  VFVFGLNYSNCLG-----TGDNQSTLIPKKLEALCGKKIKSLSYGSGPHVLLSTEDGVVY 104

Query: 87  AWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVV---------SSAIGDD 137
           AWG N   QLG G              +G+  + VC       V         S A+  D
Sbjct: 105 AWGHNGYSQLGNGTTN-----------QGIAPIQVCTNLLIKQVVEVACGSHHSVALAAD 153

Query: 138 GSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWG 197
           G ++ WG +  GQ+G G    +         L  +++V ++ G   ++A  ++G+++GWG
Sbjct: 154 GEVFAWGYNNCGQVGSGSTANQPTPRKVTNCLHIKRVVGIACGQTSSMAVLDNGEVYGWG 213

Query: 198 YSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWE 257
           Y+ +G++G          L +N+++ +                            P+   
Sbjct: 214 YNGNGQLG----------LGNNVNQLT----------------------------PV--R 233

Query: 258 PFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDI 310
              +  V V  I CG+ H+L L   G+L + G+N YGQLG   ++  + P  I
Sbjct: 234 VAALHSVCVNQIVCGYAHTLALTDEGLLYAWGANTYGQLGTGNKNNLLSPAHI 286



 Score = 62.0 bits (149), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 60/228 (26%), Positives = 98/228 (42%), Gaps = 57/228 (25%)

Query: 134 IGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWG-HALAQTEDGK 192
           + D+  ++V+G +    LG G D    ++P ++EAL G+KI  +S+G G H L  TEDG 
Sbjct: 44  VTDNDEVFVFGLNYSNCLGTG-DNQSTLIPKKLEALCGKKIKSLSYGSGPHVLLSTEDGV 102

Query: 193 LFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYM 252
           ++ WG++   ++GN                                      G   +   
Sbjct: 103 VYAWGHNGYSQLGN--------------------------------------GTTNQGIA 124

Query: 253 PI-IWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDIN 311
           PI +    L++  +VV++ACG  HS+ L  +G + + G N  GQ+G         P  + 
Sbjct: 125 PIQVCTNLLIK--QVVEVACGSHHSVALAADGEVFAWGYNNCGQVGSGSTANQPTPRKVT 182

Query: 312 --FH---PVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLG 354
              H    V I+ G   S+A+ +       G   G   WG+N + QLG
Sbjct: 183 NCLHIKRVVGIACGQTSSMAVLD------NGEVYG---WGYNGNGQLG 221


>gi|359726911|ref|ZP_09265607.1| RCC1 domain-containing protein [Leptospira weilii str. 2006001855]
          Length = 506

 Score = 91.7 bits (226), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 89/304 (29%), Positives = 149/304 (49%), Gaps = 30/304 (9%)

Query: 21  MRSASGTAVVSFGDGSQGALGLPTSLTG-----VGGDAYEPTRVPGLPSDVTSVSAGHYH 75
           M  A    V ++G+ ++G LG+  + T        G+   PT VPG+  D    + G  H
Sbjct: 191 MAIAKNGRVYTWGNNAKGQLGIGNNNTNPANPRTAGNRQPPTLVPGI-DDAVMGAYGFNH 249

Query: 76  SLAVTNNGAVWAWGRNNEVQLGRGA--LESRATWNDPKRVEGLDQVNVCAAFASGVVSSA 133
           +L + ++G + A+G+NN  QLG GA  L + +   +P  V GL   +V    A    S+A
Sbjct: 250 ALILKSDGTIVAFGQNNVGQLGNGANDLNADSFSMNPVAVVGLR--DVIQVIAGSEHSAA 307

Query: 134 IGDDGSLWVWGKSKRGQLGLGK---DITEAIVPSRVEALAGEKIVKVSFGWGHALAQTED 190
           + ++G ++VWG+++ G LG G+     T    P +VE L   +I +++ G  H LA   D
Sbjct: 308 LTENGEVYVWGRNQYGNLGNGRLSAANTAQSTPVKVEGLP--EIKQIANGRDHILALASD 365

Query: 191 GKLFGWGYSADGRIGNLGK-ALESSPLDSNI----DRSSESDQEISSSTIEKAQKLVSEG 245
           G+++ WG +A G++G  G  +   +P+ + +    + SS       S +I K+ ++   G
Sbjct: 366 GRIYSWGLNASGQLGIGGNGSPNPTPIPTQVLNILNASSVWAGGTQSFSILKSGEVKGWG 425

Query: 246 MEK--------EKYMPIIWEPF-LVEGVE-VVDIACGFDHSLVLGRNGVLLSCGSNVYGQ 295
                      E     ++EP   V G++ V+   CG  H+ VL  NG +   G N  G 
Sbjct: 426 ANGNTANLAIGETNTQKVYEPNKAVVGIDDVIHFGCGATHNFVLLGNGEIYGWGWNFKGS 485

Query: 296 LGRE 299
           LGR+
Sbjct: 486 LGRQ 489



 Score = 70.5 bits (171), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 86/326 (26%), Positives = 126/326 (38%), Gaps = 79/326 (24%)

Query: 67  TSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFA 126
           T +SAG  HS     NG V+  GRNN  QLG G   S    N+   V+     N+ +   
Sbjct: 129 TKLSAGGAHS-GFLKNGEVYTTGRNNFGQLGTG--NSTGDENNDVIVKLNSIRNISSIHF 185

Query: 127 SGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITE-------------AIVPSRVEALAGEK 173
           +   S AI  +G ++ WG + +GQLG+G + T               +VP   +A+ G  
Sbjct: 186 NQNNSMAIAKNGRVYTWGNNAKGQLGIGNNNTNPANPRTAGNRQPPTLVPGIDDAVMG-- 243

Query: 174 IVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSS 233
               ++G+ HAL    DG +  +G +  G++GN    L +     N              
Sbjct: 244 ----AYGFNHALILKSDGTIVAFGQNNVGQLGNGANDLNADSFSMN-------------- 285

Query: 234 TIEKAQKLVSEGMEKEKYMPIIWEPFLVEGV-EVVDIACGFDHSLVLGRNGVLLSCGSNV 292
                                   P  V G+ +V+ +  G +HS  L  NG +   G N 
Sbjct: 286 ------------------------PVAVVGLRDVIQVIAGSEHSAALTENGEVYVWGRNQ 321

Query: 293 YGQLGREK----QDMGMFPVDINFHP--VSISSGLGHSLAICEVRSSNVTGGARGIVSWG 346
           YG LG  +          PV +   P    I++G  H LA+              I SWG
Sbjct: 322 YGNLGNGRLSAANTAQSTPVKVEGLPEIKQIANGRDHILALASDGR---------IYSWG 372

Query: 347 WNRSSQLGRMG---PDNVPLVVEGLE 369
            N S QLG  G   P+  P+  + L 
Sbjct: 373 LNASGQLGIGGNGSPNPTPIPTQVLN 398



 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 66/244 (27%), Positives = 105/244 (43%), Gaps = 53/244 (21%)

Query: 65  DVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRG-----ALESRATWN--DPKRVEGLD 117
           +++S+     +S+A+  NG V+ WG N + QLG G         R   N   P  V G+D
Sbjct: 179 NISSIHFNQNNSMAIAKNGRVYTWGNNAKGQLGIGNNNTNPANPRTAGNRQPPTLVPGID 238

Query: 118 QVNVCA-AFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEA--IVPSRVEALAGEKI 174
              + A  F   ++   +  DG++  +G++  GQLG G +   A     + V  +    +
Sbjct: 239 DAVMGAYGFNHALI---LKSDGTIVAFGQNNVGQLGNGANDLNADSFSMNPVAVVGLRDV 295

Query: 175 VKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSST 234
           ++V  G  H+ A TE+G+++ WG +  G +GN               R S ++   S+  
Sbjct: 296 IQVIAGSEHSAALTENGEVYVWGRNQYGNLGN--------------GRLSAANTAQST-- 339

Query: 235 IEKAQKLVSEGMEKEKYMPIIWEPFLVEGV-EVVDIACGFDHSLVLGRNGVLLSCGSNVY 293
                                  P  VEG+ E+  IA G DH L L  +G + S G N  
Sbjct: 340 -----------------------PVKVEGLPEIKQIANGRDHILALASDGRIYSWGLNAS 376

Query: 294 GQLG 297
           GQLG
Sbjct: 377 GQLG 380


>gi|383319251|ref|YP_005380092.1| chromosome condensation regulator RCC1 [Methanocella conradii
           HZ254]
 gi|379320621|gb|AFC99573.1| regulator of chromosome condensation RCC1 [Methanocella conradii
           HZ254]
          Length = 447

 Score = 91.7 bits (226), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 94/323 (29%), Positives = 139/323 (43%), Gaps = 52/323 (16%)

Query: 64  SDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCA 123
           S V  ++AG  H LA+  +G VWAWG N+  +LG G  E+     +P +V GL  V   +
Sbjct: 70  SGVRQIAAGSGHVLALKGDGTVWAWGSNSYGELGDGTNENSI---EPVQVAGLTGVKAIS 126

Query: 124 AFASGVVSSAIGDDGSLWVWGKSKRGQLGLGK-DITEAIVPSRVEALAGEKIVKVSFGWG 182
           A      S A+  DGS+W WG +  GQLG        ++ P +VE L  E +V +S G  
Sbjct: 127 AGKG--FSLALKGDGSVWAWGSNTYGQLGKNPLSFMGSLTPIQVEGL--EGVVSISCGGS 182

Query: 183 HALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQ-EISSSTIEKA--- 238
           H  A  E+G L+ WG ++ G +G+     +  P+   I      D  E+S +   K    
Sbjct: 183 HCFALQENGVLWAWGENSHGILGDGTNESQFKPVKPKIKDVKAFDAGELSHALAVKEDGS 242

Query: 239 ---------------------QKLVSEGMEKEKYMPIIWEPFLVEGV-EVVDIACGFDHS 276
                                Q  +S G E + Y P I     V GV +   +A G  HS
Sbjct: 243 VWAWGFNYKGQLGTGGVSLSDQGRISLGREADNYNPDI-----VRGVSDAKAVAAGGSHS 297

Query: 277 LVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFHPV----SISSGLGHSLAICEVRS 332
           + L  +G + + GSN  GQLG                 +    +I++G+ H+LA+     
Sbjct: 298 VALASDGSVWAWGSNSDGQLGLGHAGGSDVTSPTRVQGIEGVTAIAAGMYHTLAL----- 352

Query: 333 SNVTGGARGIVSWGWNRSSQLGR 355
                G   + +WG N   QLG 
Sbjct: 353 ----KGDGSVWAWGSNSDGQLGN 371



 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 70/201 (34%), Positives = 103/201 (51%), Gaps = 29/201 (14%)

Query: 31  SFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHY-HSLAVTNNGAVWAWG 89
           ++G+ S G LG      G     ++P + P +  DV +  AG   H+LAV  +G+VWAWG
Sbjct: 195 AWGENSHGILG-----DGTNESQFKPVK-PKI-KDVKAFDAGELSHALAVKEDGSVWAWG 247

Query: 90  RNNEVQLGRG----------ALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGS 139
            N + QLG G          +L   A   +P  V G+      AA   G  S A+  DGS
Sbjct: 248 FNYKGQLGTGGVSLSDQGRISLGREADNYNPDIVRGVSDAKAVAA--GGSHSVALASDGS 305

Query: 140 LWVWGKSKRGQLGLG----KDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFG 195
           +W WG +  GQLGLG     D+T    P+RV+ +  E +  ++ G  H LA   DG ++ 
Sbjct: 306 VWAWGSNSDGQLGLGHAGGSDVTS---PTRVQGI--EGVTAIAAGMYHTLALKGDGSVWA 360

Query: 196 WGYSADGRIGNLGKALESSPL 216
           WG ++DG++GN   +  SSP+
Sbjct: 361 WGSNSDGQLGNASFSAASSPV 381



 Score = 84.3 bits (207), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 91/304 (29%), Positives = 133/304 (43%), Gaps = 73/304 (24%)

Query: 28  AVVSFGDGSQGALGL-PTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVW 86
           +V ++G  + G LG  P S  G    +  P +V GL   V S+S G  H  A+  NG +W
Sbjct: 140 SVWAWGSNTYGQLGKNPLSFMG----SLTPIQVEGL-EGVVSISCGGSHCFALQENGVLW 194

Query: 87  AWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIG--DDGSLWVWG 144
           AWG N+   LG G  ES+     PK       +    AF +G +S A+   +DGS+W WG
Sbjct: 195 AWGENSHGILGDGTNESQFKPVKPK-------IKDVKAFDAGELSHALAVKEDGSVWAWG 247

Query: 145 KSKRGQLG-------------LGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDG 191
            + +GQLG             LG++  +   P  V  ++  K   V+ G  H++A   DG
Sbjct: 248 FNYKGQLGTGGVSLSDQGRISLGRE-ADNYNPDIVRGVSDAK--AVAAGGSHSVALASDG 304

Query: 192 KLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKY 251
            ++ WG ++DG++G LG A  S               +++S                   
Sbjct: 305 SVWAWGSNSDGQLG-LGHAGGS---------------DVTS------------------- 329

Query: 252 MPIIWEPFLVEGVE-VVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDI 310
                 P  V+G+E V  IA G  H+L L  +G + + GSN  GQLG         PV I
Sbjct: 330 ------PTRVQGIEGVTAIAAGMYHTLALKGDGSVWAWGSNSDGQLGNASFSAASSPVPI 383

Query: 311 NFHP 314
              P
Sbjct: 384 LIGP 387



 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 86/299 (28%), Positives = 131/299 (43%), Gaps = 69/299 (23%)

Query: 62  LPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNV 121
           L     +++A +  S+A+  +G+VW WGR          +     W+ P+RV+ +  V  
Sbjct: 26  LSPQAVAIAASNCTSVALLEDGSVWQWGR----------VCDGVEWSAPQRVD-ISGVRQ 74

Query: 122 CAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGW 181
            AA +  V+  A+  DG++W WG +  G+LG G +   +I P +V  L G K   +S G 
Sbjct: 75  IAAGSGHVL--ALKGDGTVWAWGSNSYGELGDGTN-ENSIEPVQVAGLTGVK--AISAGK 129

Query: 182 GHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKL 241
           G +LA   DG ++ WG +  G++G        +PL                         
Sbjct: 130 GFSLALKGDGSVWAWGSNTYGQLGK-------NPL------------------------- 157

Query: 242 VSEGMEKEKYMPIIWEPFLVEGVE-VVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREK 300
                    +M  +  P  VEG+E VV I+CG  H   L  NGVL + G N +G LG   
Sbjct: 158 --------SFMGSL-TPIQVEGLEGVVSISCGGSHCFALQENGVLWAWGENSHGILGDGT 208

Query: 301 QDMGMFPVDINFHPV-SISSG-LGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMG 357
            +    PV      V +  +G L H+LA+ E  S         + +WG+N   QLG  G
Sbjct: 209 NESQFKPVKPKIKDVKAFDAGELSHALAVKEDGS---------VWAWGFNYKGQLGTGG 258



 Score = 69.7 bits (169), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 60/151 (39%), Positives = 84/151 (55%), Gaps = 18/151 (11%)

Query: 26  GTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAV 85
           GT  VS  D  QG + L     G   D Y P  V G+ SD  +V+AG  HS+A+ ++G+V
Sbjct: 255 GTGGVSLSD--QGRISL-----GREADNYNPDIVRGV-SDAKAVAAGGSHSVALASDGSV 306

Query: 86  WAWGRNNEVQLGRG-ALESRATWNDPKRVEGLDQVNVCAAFASGVVSS-AIGDDGSLWVW 143
           WAWG N++ QLG G A  S  T   P RV+G++ V    A A+G+  + A+  DGS+W W
Sbjct: 307 WAWGSNSDGQLGLGHAGGSDVT--SPTRVQGIEGVT---AIAAGMYHTLALKGDGSVWAW 361

Query: 144 GKSKRGQLGLGKDITEAIVPSRVEALAGEKI 174
           G +  GQLG   + + +   S V  L G +I
Sbjct: 362 GSNSDGQLG---NASFSAASSPVPILIGPQI 389



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/83 (40%), Positives = 52/83 (62%), Gaps = 4/83 (4%)

Query: 24  ASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNG 83
           AS  +V ++G  S G LGL  +    G D   PTRV G+   VT+++AG YH+LA+  +G
Sbjct: 301 ASDGSVWAWGSNSDGQLGLGHA---GGSDVTSPTRVQGI-EGVTAIAAGMYHTLALKGDG 356

Query: 84  AVWAWGRNNEVQLGRGALESRAT 106
           +VWAWG N++ QLG  +  + ++
Sbjct: 357 SVWAWGSNSDGQLGNASFSAASS 379


>gi|444916088|ref|ZP_21236212.1| BNR repeat domain protein [Cystobacter fuscus DSM 2262]
 gi|444712767|gb|ELW53682.1| BNR repeat domain protein [Cystobacter fuscus DSM 2262]
          Length = 823

 Score = 91.7 bits (226), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 60/151 (39%), Positives = 93/151 (61%), Gaps = 13/151 (8%)

Query: 60  PGLPSDVTS---VSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGL 116
           P  P+++ S   V+AG  HSLA+ ++G VWAWGRNN  QLG G+L  R     P +V  L
Sbjct: 611 PTEPTNLFSILGVAAGQNHSLALRSDGTVWAWGRNNSGQLGDGSLVDRTR---PVQVARL 667

Query: 117 DQVNVCAAFASGVVSS-AIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIV 175
           ++V    +  +G+  S A+  DG++W WG +  GQLG G    + ++P +V  L+G  +V
Sbjct: 668 NRV---VSVVAGLYHSLALRSDGTVWAWGDNGSGQLGDGTYFGQ-MLPVQVPGLSG--VV 721

Query: 176 KVSFGWGHALAQTEDGKLFGWGYSADGRIGN 206
            V+ G  H+LA   DG ++ WGY+++G+IG+
Sbjct: 722 AVAAGGRHSLALRADGTVWAWGYNSNGQIGD 752



 Score = 90.9 bits (224), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 95/321 (29%), Positives = 152/321 (47%), Gaps = 52/321 (16%)

Query: 66  VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAF 125
           V SVSAG  HSLA+  +G VWAWG+NN+ QLG G+   R +     R+ G+ +V      
Sbjct: 245 VASVSAGDSHSLALRWDGTVWAWGQNNQGQLGIGSFTDRPSPVQVPRLTGVVEV------ 298

Query: 126 ASGVVSS-AIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHA 184
           A+G   + A+  DG++W WG +  GQLG G  ++ +  P +V  L G  +V V+ G GH+
Sbjct: 299 AAGQFHALALRLDGTVWAWGFNGSGQLGDGTTLSRS-SPVQVPGLTG--VVSVAAGDGHS 355

Query: 185 LAQTEDGKLFGWGYSADGRIGN----------LGKAL--------ESSPLDSNIDRSSES 226
           +A   DG+++ WG ++ G++G+           G+AL           P +   D +S +
Sbjct: 356 VAVLSDGRVYTWGRNSAGQLGDGSQDALPHPTPGQALLPFVCGNHRLEPEEQCDDGNSIN 415

Query: 227 DQEISSSTI-EKAQKLVSEGMEKEKYMPIIWEPFLVEG--------VEVVDIACGFDHSL 277
               S+  + E    L  +G++         +  LV G        +E   +  G   +L
Sbjct: 416 GDGCSALCLAESGSSLCGDGIKAAAEACD--DGNLVNGDGCSFVCRLETPRLVAGAKFTL 473

Query: 278 VLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFHPVS----ISSGLGHSLAICEVRSS 333
               +G L + G N  GQLG +     + PV ++   ++    +++G  HSLA+      
Sbjct: 474 FQKNDGKLWAWGHNFSGQLGDDSTVNRLTPVSVSTASLTDVKNVAAGGFHSLAL------ 527

Query: 334 NVTGGARGIVSWGWNRSSQLG 354
              G    + SWG N  SQLG
Sbjct: 528 ---GSDGKLWSWGSNSLSQLG 545



 Score = 87.4 bits (215), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 99/339 (29%), Positives = 149/339 (43%), Gaps = 41/339 (12%)

Query: 51  GDAYEPTRVPGLPSD------VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESR 104
           GD     R+   P D      V  V+AG  H+LAV ++  +WAWGRN + QLG G+  S 
Sbjct: 70  GDGTTAYRLASAPVDFSNGMVVKRVAAGGSHALAVLSDKTLWAWGRNGDGQLGVGSTTSS 129

Query: 105 ATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPS 164
            +   P +V G   V V A  AS   S+A+  DG +  WG +  GQLG G   T+   P 
Sbjct: 130 FS---PVKVPGRTGVEVVAMAASTFNSAAVLSDGKVLTWGYNAYGQLGNGS-TTDQSSPV 185

Query: 165 RVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYS--ADGRIGNLGKALESSPLDSNIDR 222
            V AL+   I  VS G  H LA    G ++ WG++      +G+      ++P  + + +
Sbjct: 186 EVSALS--DIKGVSVGKYHMLALRSGGTVWAWGFNGSGQLGLGSGSNTQYNTPQQAAVLK 243

Query: 223 SSESDQEISSSTI------------EKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIA 270
              S     S ++            +  Q  +  G   ++  P+   P L     VV++A
Sbjct: 244 GVASVSAGDSHSLALRWDGTVWAWGQNNQGQLGIGSFTDRPSPVQ-VPRL---TGVVEVA 299

Query: 271 CGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDIN--FHPVSISSGLGHSLAIC 328
            G  H+L L  +G + + G N  GQLG         PV +      VS+++G GHS+A+ 
Sbjct: 300 AGQFHALALRLDGTVWAWGFNGSGQLGDGTTLSRSSPVQVPGLTGVVSVAAGDGHSVAVL 359

Query: 329 EVRSSNVTGGARGIVSWGWNRSSQLGRMGPDNVPLVVEG 367
                        + +WG N + QLG    D +P    G
Sbjct: 360 SDGR---------VYTWGRNSAGQLGDGSQDALPHPTPG 389



 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 88/289 (30%), Positives = 126/289 (43%), Gaps = 72/289 (24%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAW 88
           V+++G  + G LG      G   D   P  V  L SD+  VS G YH LA+ + G VWAW
Sbjct: 162 VLTWGYNAYGQLG-----NGSTTDQSSPVEVSAL-SDIKGVSVGKYHMLALRSGGTVWAW 215

Query: 89  GRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGD--------DGSL 140
           G N   QL      S   +N P++          AA   GV S + GD        DG++
Sbjct: 216 GFNGSGQL-GLGSGSNTQYNTPQQ----------AAVLKGVASVSAGDSHSLALRWDGTV 264

Query: 141 WVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSA 200
           W WG++ +GQLG+G   T+   P +V  L G  +V+V+ G  HALA   DG ++ WG++ 
Sbjct: 265 WAWGQNNQGQLGIGS-FTDRPSPVQVPRLTG--VVEVAAGQFHALALRLDGTVWAWGFNG 321

Query: 201 DGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFL 260
            G++G+           + + RSS                                 P  
Sbjct: 322 SGQLGD----------GTTLSRSS---------------------------------PVQ 338

Query: 261 VEGVE-VVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPV 308
           V G+  VV +A G  HS+ +  +G + + G N  GQLG   QD    P 
Sbjct: 339 VPGLTGVVSVAAGDGHSVAVLSDGRVYTWGRNSAGQLGDGSQDALPHPT 387



 Score = 79.3 bits (194), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 58/156 (37%), Positives = 83/156 (53%), Gaps = 8/156 (5%)

Query: 52  DAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPK 111
           D   P +V  L + V SV AG YHSLA+ ++G VWAWG N   QLG G    +     P 
Sbjct: 657 DRTRPVQVARL-NRVVSVVAGLYHSLALRSDGTVWAWGDNGSGQLGDGTYFGQML---PV 712

Query: 112 RVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAG 171
           +V GL    V A  A G  S A+  DG++W WG +  GQ+G G D +    PS V+ L  
Sbjct: 713 QVPGLS--GVVAVAAGGRHSLALRADGTVWAWGYNSNGQIGDGSDASIIYRPSPVKVLFS 770

Query: 172 EK--IVKVSFGWGHALAQTEDGKLFGWGYSADGRIG 205
            +  ++ V+ G  H++A    G++  WG +  G++G
Sbjct: 771 SQDVVMGVAAGDTHSVAVLSGGRVRTWGQNDSGQLG 806



 Score = 78.2 bits (191), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 88/317 (27%), Positives = 139/317 (43%), Gaps = 43/317 (13%)

Query: 70  SAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGV 129
           +AG  ++L   ++G+VW WG N+  QLG G    R        V+  + + V    A G 
Sbjct: 43  AAGEAYTLIQRDDGSVWTWGANSGGQLGDGTTAYRLA---SAPVDFSNGMVVKRVAAGGS 99

Query: 130 VSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTE 189
            + A+  D +LW WG++  GQLG+G   T +  P +V    G ++V ++    ++ A   
Sbjct: 100 HALAVLSDKTLWAWGRNGDGQLGVGS-TTSSFSPVKVPGRTGVEVVAMAASTFNSAAVLS 158

Query: 190 DGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGM--- 246
           DGK+  WGY+A G++GN     +SSP    ++ S+ SD +  S        L S G    
Sbjct: 159 DGKVLTWGYNAYGQLGNGSTTDQSSP----VEVSALSDIKGVSVGKYHMLALRSGGTVWA 214

Query: 247 -------------EKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVY 293
                                  +  +++G  V  ++ G  HSL L  +G + + G N  
Sbjct: 215 WGFNGSGQLGLGSGSNTQYNTPQQAAVLKG--VASVSAGDSHSLALRWDGTVWAWGQNNQ 272

Query: 294 GQLGREKQDMGMFPVDINFHP--VSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSS 351
           GQLG         PV +      V +++G  H+LA+   R          + +WG+N S 
Sbjct: 273 GQLGIGSFTDRPSPVQVPRLTGVVEVAAGQFHALAL---RLDGT------VWAWGFNGSG 323

Query: 352 QLG------RMGPDNVP 362
           QLG      R  P  VP
Sbjct: 324 QLGDGTTLSRSSPVQVP 340



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 88/304 (28%), Positives = 132/304 (43%), Gaps = 39/304 (12%)

Query: 71  AGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVV 130
           AG   +L   N+G +WAWG N   QLG  +  +R T   P  V      +V    A G  
Sbjct: 467 AGAKFTLFQKNDGKLWAWGHNFSGQLGDDSTVNRLT---PVSVSTASLTDVKNVAAGGFH 523

Query: 131 SSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTED 190
           S A+G DG LW WG +   QLG+ +D T     S         +V V+ G  H+L    +
Sbjct: 524 SLALGSDGKLWSWGSNSLSQLGVSRD-TLGSRASPALVSGVSGVVAVAAGETHSLVVLSN 582

Query: 191 GKLFGWGYSADGRIGN----LGKALESSPLD-------------SNIDRSSESDQEISSS 233
           GK+  WGY+  G+IG+    +     SSP +              N   +  SD  + + 
Sbjct: 583 GKVSAWGYNGYGQIGDGCSPVPTFYCSSPTEPTNLFSILGVAAGQNHSLALRSDGTVWAW 642

Query: 234 TIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVY 293
               + +L  +G   ++  P+     +     VV +  G  HSL L  +G + + G N  
Sbjct: 643 GRNNSGQL-GDGSLVDRTRPVQ----VARLNRVVSVVAGLYHSLALRSDGTVWAWGDNGS 697

Query: 294 GQLGREKQDMGMFPVDINFHP--VSISSGLGHSLAICEVRSSNVTGGARGIV-SWGWNRS 350
           GQLG       M PV +      V++++G  HSLA+           A G V +WG+N +
Sbjct: 698 GQLGDGTYFGQMLPVQVPGLSGVVAVAAGGRHSLAL----------RADGTVWAWGYNSN 747

Query: 351 SQLG 354
            Q+G
Sbjct: 748 GQIG 751



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 89/306 (29%), Positives = 141/306 (46%), Gaps = 26/306 (8%)

Query: 64  SDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLG--RGALESRATWNDPKRVEGLDQVNV 121
           +DV +V+AG +HSLA+ ++G +W+WG N+  QLG  R  L SRA+   P  V G+  V  
Sbjct: 512 TDVKNVAAGGFHSLALGSDGKLWSWGSNSLSQLGVSRDTLGSRAS---PALVSGVSGVVA 568

Query: 122 CAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLG-KDITEAIVPSRVEALAGEKIVKVSFG 180
            AA  +   S  +  +G +  WG +  GQ+G G   +      S  E      I+ V+ G
Sbjct: 569 VAAGET--HSLVVLSNGKVSAWGYNGYGQIGDGCSPVPTFYCSSPTEPTNLFSILGVAAG 626

Query: 181 WGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLD-SNIDRSSESDQEISSSTIEKAQ 239
             H+LA   DG ++ WG +  G++G+      + P+  + ++R       +  S   ++ 
Sbjct: 627 QNHSLALRSDGTVWAWGRNNSGQLGDGSLVDRTRPVQVARLNRVVSVVAGLYHSLALRSD 686

Query: 240 KLV-------SEGMEKEKYMPIIWEPFLVEGVE-VVDIACGFDHSLVLGRNGVLLSCGSN 291
             V       S  +    Y   +  P  V G+  VV +A G  HSL L  +G + + G N
Sbjct: 687 GTVWAWGDNGSGQLGDGTYFGQM-LPVQVPGLSGVVAVAAGGRHSLALRADGTVWAWGYN 745

Query: 292 VYGQLGREKQDMGMF---PVDINFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWN 348
             GQ+G       ++   PV + F    +  G    +A  +  S  V  G R + +WG N
Sbjct: 746 SNGQIGDGSDASIIYRPSPVKVLFSSQDVVMG----VAAGDTHSVAVLSGGR-VRTWGQN 800

Query: 349 RSSQLG 354
            S QLG
Sbjct: 801 DSGQLG 806



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 99/369 (26%), Positives = 152/369 (41%), Gaps = 74/369 (20%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAW 88
           V ++G    G LG  T+L+        P +VPGL + V SV+AG  HS+AV ++G V+ W
Sbjct: 314 VWAWGFNGSGQLGDGTTLS-----RSSPVQVPGL-TGVVSVAAGDGHSVAVLSDGRVYTW 367

Query: 89  GRNNEVQLGRGA----------------------LESRATWNDPKRVEGLDQVNVCAAFA 126
           GRN+  QLG G+                      LE     +D   + G    + C+A  
Sbjct: 368 GRNSAGQLGDGSQDALPHPTPGQALLPFVCGNHRLEPEEQCDDGNSING----DGCSALC 423

Query: 127 SGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALA 186
                S++  DG          G L  G   +          +AG K           L 
Sbjct: 424 LAESGSSLCGDGIKAAAEACDDGNLVNGDGCSFVCRLETPRLVAGAKFT---------LF 474

Query: 187 QTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQE------ISSSTIEKAQK 240
           Q  DGKL+ WG++  G++G+       +P+  ++  +S +D +        S  +    K
Sbjct: 475 QKNDGKLWAWGHNFSGQLGDDSTVNRLTPV--SVSTASLTDVKNVAAGGFHSLALGSDGK 532

Query: 241 LVSEGMEKEKYMPIIWE-------PFLVEGVEVVDIACGFD-HSLVLGRNGVLLSCGSNV 292
           L S G      + +  +       P LV GV  V      + HSLV+  NG + + G N 
Sbjct: 533 LWSWGSNSLSQLGVSRDTLGSRASPALVSGVSGVVAVAAGETHSLVVLSNGKVSAWGYNG 592

Query: 293 YGQLGREKQDMGMF-------PVDINFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSW 345
           YGQ+G     +  F       P ++ F  + +++G  HSLA+   RS         + +W
Sbjct: 593 YGQIGDGCSPVPTFYCSSPTEPTNL-FSILGVAAGQNHSLAL---RSDGT------VWAW 642

Query: 346 GWNRSSQLG 354
           G N S QLG
Sbjct: 643 GRNNSGQLG 651



 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 49/138 (35%), Positives = 66/138 (47%), Gaps = 6/138 (4%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAW 88
           V ++GD   G LG  T           P +VPGL S V +V+AG  HSLA+  +G VWAW
Sbjct: 689 VWAWGDNGSGQLGDGTYF-----GQMLPVQVPGL-SGVVAVAAGGRHSLALRADGTVWAW 742

Query: 89  GRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKR 148
           G N+  Q+G G+  S      P +V    Q  V    A    S A+   G +  WG++  
Sbjct: 743 GYNSNGQIGDGSDASIIYRPSPVKVLFSSQDVVMGVAAGDTHSVAVLSGGRVRTWGQNDS 802

Query: 149 GQLGLGKDITEAIVPSRV 166
           GQLG   + T+   P  V
Sbjct: 803 GQLGYATNNTDRSTPGEV 820


>gi|356518818|ref|XP_003528074.1| PREDICTED: LOW QUALITY PROTEIN: probable E3 ubiquitin-protein
           ligase HERC4-like [Glycine max]
          Length = 404

 Score = 91.7 bits (226), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 107/361 (29%), Positives = 159/361 (44%), Gaps = 53/361 (14%)

Query: 21  MRSASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGL-PSDVTSVSAGHYHSLAV 79
           +R++    V  +G+G  G LGL     G     ++P   P      + +++ G  H+L +
Sbjct: 14  LRASGKRFVALWGNGDFGRLGL-----GNLDSQWKPVVCPAFRDRTLKAIACGGAHTLFL 68

Query: 80  TNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQ--VNVCAAFASGVVSSAIGDD 137
           T+NG V+A G N+  QLG    ES+    +P  V G ++  V V A +     S AI  D
Sbjct: 69  TDNGCVYATGLNDFGQLG--VSESKHYSVEPLCVFGEEKKVVQVSAGYNH---SCAITVD 123

Query: 138 GSLWVWGKSKRGQLGLGKDITEAI-VPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGW 196
           G L++WGK+   QLGLGK     + +P++VE L G  I   + G  H+LA ++ G+ F W
Sbjct: 124 GELYMWGKNTSVQLGLGKRAPNIVPLPTKVEYLNGINIKMAALGSDHSLAISDGGEAFSW 183

Query: 197 GYSADGRIGNLGKALESSPLDSNIDRSSESDQEI-----------------SSSTIEKAQ 239
           G    GR   LG   ESS L      S  + + I                 S+ T E   
Sbjct: 184 GVGVSGR---LGHGHESSILGFFKSYSEYTPRLIKDLEGIKVKYVASGLLNSACTDENGS 240

Query: 240 KLV--SEGME--KEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQ 295
             V     +E  + K M    +P L+  +    + CG  H+ VL  +G L +  SN  G 
Sbjct: 241 VFVFGERAIERLRLKAMSDATKPSLIGELPSSKVVCGGYHTCVLTNSGELYTWXSNENGC 300

Query: 296 LGREKQDMGMFPVDIN--FHPVSI---SSGLGHSLAICEVRSSNVTGGARGIVSWGWNRS 350
           LG    D+   P  I   F   S+   S G  ++ AI E R          + +WGW  S
Sbjct: 301 LGIGSSDVIHLPEKIXGPFLKSSVSQLSCGWKNTAAISEGR----------VFTWGWGGS 350

Query: 351 S 351
           +
Sbjct: 351 N 351



 Score = 54.7 bits (130), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 59/244 (24%), Positives = 97/244 (39%), Gaps = 44/244 (18%)

Query: 73  HYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSS 132
           H+ SL  +    V  WG  +  +LG G L+S+  W  P          + A    G  + 
Sbjct: 10  HHLSLRASGKRFVALWGNGDFGRLGLGNLDSQ--WK-PVVCPAFRDRTLKAIACGGAHTL 66

Query: 133 AIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGK 192
            + D+G ++  G +  GQLG+ +    ++ P  V     +K+V+VS G+ H+ A T DG+
Sbjct: 67  FLTDNGCVYATGLNDFGQLGVSESKHYSVEPLCVFG-EEKKVVQVSAGYNHSCAITVDGE 125

Query: 193 LFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYM 252
           L+ WG +   ++G   +A    PL + ++                               
Sbjct: 126 LYMWGKNTSVQLGLGKRAPNIVPLPTKVE------------------------------- 154

Query: 253 PIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQL--GREKQDMGMFPVDI 310
                   + G+ +   A G DHSL +   G   S G  V G+L  G E   +G F    
Sbjct: 155 -------YLNGINIKMAALGSDHSLAISDGGEAFSWGVGVSGRLGHGHESSILGFFKSYS 207

Query: 311 NFHP 314
            + P
Sbjct: 208 EYTP 211



 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 72/298 (24%), Positives = 125/298 (41%), Gaps = 69/298 (23%)

Query: 56  PTRVPGLPS-DVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGA-------LESRATW 107
           PT+V  L   ++   + G  HSLA+++ G  ++WG     +LG G         +S + +
Sbjct: 150 PTKVEYLNGINIKMAALGSDHSLAISDGGEAFSWGVGVSGRLGHGHESSILGFFKSYSEY 209

Query: 108 NDPKRVEGLDQVNVCAAFASGVVSSAIGDD-GSLWVWGKSKRGQLGLGKDITEAIVPSRV 166
             P+ ++ L+ + V    ASG+++SA  D+ GS++V+G+    +L L K +++A  PS +
Sbjct: 210 T-PRLIKDLEGIKV-KYVASGLLNSACTDENGSVFVFGERAIERLRL-KAMSDATKPSLI 266

Query: 167 EALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSES 226
             L   K+V   +   H    T  G+L+ W  + +G +G +G                  
Sbjct: 267 GELPSSKVVCGGY---HTCVLTNSGELYTWXSNENGCLG-IG------------------ 304

Query: 227 DQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVL------- 279
               SS  I   +K+                PFL   V    ++CG+ ++  +       
Sbjct: 305 ----SSDVIHLPEKIXG--------------PFLKSSVS--QLSCGWKNTAAISEGRVFT 344

Query: 280 ----GRNGVLLSCGSNVYGQLGREKQDMGMFPVDINF----HPVSISSGLGHSLAICE 329
               G NG     G +  GQLG       + P  + F      + +S G  H+ AI E
Sbjct: 345 WGWGGSNGTFSEVGHSSSGQLGHGSDVDYINPTRVCFGEDVKALQVSCGFNHTGAILE 402



 Score = 52.4 bits (124), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 44/150 (29%), Positives = 71/150 (47%), Gaps = 18/150 (12%)

Query: 52  DAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPK 111
           DA +P+ +  LPS  + V  G YH+  +TN+G ++ W  N    LG G   S    + P+
Sbjct: 259 DATKPSLIGELPS--SKVVCGGYHTCVLTNSGELYTWXSNENGCLGIG---SSDVIHLPE 313

Query: 112 RVEGLDQVNVCAAFASGVVSSAIGDDGSLWVW------------GKSKRGQLGLGKDITE 159
           ++ G    +  +  + G  ++A   +G ++ W            G S  GQLG G D+ +
Sbjct: 314 KIXGPFLKSSVSQLSCGWKNTAAISEGRVFTWGWGGSNGTFSEVGHSSSGQLGHGSDV-D 372

Query: 160 AIVPSRVEALAGEKIVKVSFGWGHALAQTE 189
            I P+RV      K ++VS G+ H  A  E
Sbjct: 373 YINPTRVCFGEDVKALQVSCGFNHTGAILE 402



 Score = 45.4 bits (106), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 43/126 (34%), Positives = 59/126 (46%), Gaps = 20/126 (15%)

Query: 256 WEPFLVEGVE---VVDIACGFDHSLVLGRNGVLLSCGSNVYGQLG-REKQDMGMFPVDI- 310
           W+P +        +  IACG  H+L L  NG + + G N +GQLG  E +   + P+ + 
Sbjct: 42  WKPVVCPAFRDRTLKAIACGGAHTLFLTDNGCVYATGLNDFGQLGVSESKHYSVEPLCVF 101

Query: 311 --NFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQ--LGRMGPDNVPL--V 364
                 V +S+G  HS AI       V G    +  WG N S Q  LG+  P+ VPL   
Sbjct: 102 GEEKKVVQVSAGYNHSCAI------TVDG---ELYMWGKNTSVQLGLGKRAPNIVPLPTK 152

Query: 365 VEGLEG 370
           VE L G
Sbjct: 153 VEYLNG 158


>gi|74226109|dbj|BAE25272.1| unnamed protein product [Mus musculus]
          Length = 1057

 Score = 91.7 bits (226), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 63/245 (25%), Positives = 113/245 (46%), Gaps = 43/245 (17%)

Query: 55  EPTRVPGLPS-DVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRV 113
           +P +V  L + ++ +V+ G  H+LA+ + G V+AWG +++ QLG     S      P+ +
Sbjct: 74  KPEQVVALDAQNIVAVACGEAHTLALNDKGQVYAWGLDSDGQLGLQG--SEECIRVPRNI 131

Query: 114 EGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEK 173
           + L  + +         S A+     ++ WG++K GQLGLG D  +   P  +++L G  
Sbjct: 132 KSLSDIQIVQVACGYYHSLALSKASEVFCWGQNKYGQLGLGIDCQKQTSPQLIKSLLGIP 191

Query: 174 IVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSS 233
            ++V+ G  H+   T  G +FGWG +  G++G          L+                
Sbjct: 192 FMQVAAGGAHSFVLTLSGAIFGWGRNKFGQLG----------LND--------------- 226

Query: 234 TIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVY 293
                        E ++Y+P + +   +   ++V I CG DH+  L + G + + G+  Y
Sbjct: 227 -------------ENDRYVPNLLKS--LRSQKIVYICCGEDHTAALTKEGGVFTFGAGGY 271

Query: 294 GQLGR 298
           GQLG 
Sbjct: 272 GQLGH 276



 Score = 80.9 bits (198), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 58/188 (30%), Positives = 96/188 (51%), Gaps = 8/188 (4%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPS-DVTSVSAGHYHSLAVTNNGAVWA 87
           V ++G  S G LGL  S   +      P  +  L    +  V+ G+YHSLA++    V+ 
Sbjct: 105 VYAWGLDSDGQLGLQGSEECIR----VPRNIKSLSDIQIVQVACGYYHSLALSKASEVFC 160

Query: 88  WGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSK 147
           WG+N   QLG G    + T   P+ ++ L  +      A G  S  +   G+++ WG++K
Sbjct: 161 WGQNKYGQLGLGIDCQKQT--SPQLIKSLLGIPFMQVAAGGAHSFVLTLSGAIFGWGRNK 218

Query: 148 RGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNL 207
            GQLGL  D  +  VP+ +++L  +KIV +  G  H  A T++G +F +G    G++G+ 
Sbjct: 219 FGQLGLN-DENDRYVPNLLKSLRSQKIVYICCGEDHTAALTKEGGVFTFGAGGYGQLGHN 277

Query: 208 GKALESSP 215
             + E +P
Sbjct: 278 STSHEINP 285



 Score = 68.9 bits (167), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 67/275 (24%), Positives = 111/275 (40%), Gaps = 57/275 (20%)

Query: 85  VWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWG 144
           +  WG  +  QLG G ++      +P+R +      V         +  + DDG+++  G
Sbjct: 1   MLCWGNASYGQLGLGGIDEEIVL-EPRRSDFFVNKKVRDVGCGLRHTVFVLDDGTVYTCG 59

Query: 145 KSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRI 204
            +  GQLG  K   +   P +V AL  + IV V+ G  H LA  + G+++ WG  +DG++
Sbjct: 60  CNDLGQLGHEKSRKK---PEQVVALDAQNIVAVACGEAHTLALNDKGQVYAWGLDSDGQL 116

Query: 205 GNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGV 264
           G  G   E   +  NI   S+                                      +
Sbjct: 117 GLQGSE-ECIRVPRNIKSLSD--------------------------------------I 137

Query: 265 EVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLG-----REKQDMGMFPVDINFHPVSISS 319
           ++V +ACG+ HSL L +   +   G N YGQLG     +++    +    +    + +++
Sbjct: 138 QIVQVACGYYHSLALSKASEVFCWGQNKYGQLGLGIDCQKQTSPQLIKSLLGIPFMQVAA 197

Query: 320 GLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLG 354
           G  HS  +          GA  I  WG N+  QLG
Sbjct: 198 GGAHSFVL-------TLSGA--IFGWGRNKFGQLG 223


>gi|312433980|ref|NP_084390.1| probable E3 ubiquitin-protein ligase HERC4 isoform 1 [Mus musculus]
 gi|126215720|sp|Q6PAV2.2|HERC4_MOUSE RecName: Full=Probable E3 ubiquitin-protein ligase HERC4; AltName:
           Full=HECT domain and RCC1-like domain-containing protein
           4
          Length = 1057

 Score = 91.7 bits (226), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 63/245 (25%), Positives = 113/245 (46%), Gaps = 43/245 (17%)

Query: 55  EPTRVPGLPS-DVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRV 113
           +P +V  L + ++ +V+ G  H+LA+ + G V+AWG +++ QLG     S      P+ +
Sbjct: 74  KPEQVVALDAQNIVAVACGEAHTLALNDKGQVYAWGLDSDGQLGLQG--SEECIRVPRNI 131

Query: 114 EGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEK 173
           + L  + +         S A+     ++ WG++K GQLGLG D  +   P  +++L G  
Sbjct: 132 KSLSDIQIVQVACGYYHSLALSKASEVFCWGQNKYGQLGLGIDCQKQTSPQLIKSLLGIP 191

Query: 174 IVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSS 233
            ++V+ G  H+   T  G +FGWG +  G++G          L+                
Sbjct: 192 FMQVAAGGAHSFVLTLSGAIFGWGRNKFGQLG----------LND--------------- 226

Query: 234 TIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVY 293
                        E ++Y+P + +   +   ++V I CG DH+  L + G + + G+  Y
Sbjct: 227 -------------ENDRYVPNLLKS--LRSQKIVYICCGEDHTAALTKEGGVFTFGAGGY 271

Query: 294 GQLGR 298
           GQLG 
Sbjct: 272 GQLGH 276



 Score = 80.9 bits (198), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 58/188 (30%), Positives = 96/188 (51%), Gaps = 8/188 (4%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPS-DVTSVSAGHYHSLAVTNNGAVWA 87
           V ++G  S G LGL  S   +      P  +  L    +  V+ G+YHSLA++    V+ 
Sbjct: 105 VYAWGLDSDGQLGLQGSEECIR----VPRNIKSLSDIQIVQVACGYYHSLALSKASEVFC 160

Query: 88  WGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSK 147
           WG+N   QLG G    + T   P+ ++ L  +      A G  S  +   G+++ WG++K
Sbjct: 161 WGQNKYGQLGLGIDCQKQT--SPQLIKSLLGIPFMQVAAGGAHSFVLTLSGAIFGWGRNK 218

Query: 148 RGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNL 207
            GQLGL  D  +  VP+ +++L  +KIV +  G  H  A T++G +F +G    G++G+ 
Sbjct: 219 FGQLGLN-DENDRYVPNLLKSLRSQKIVYICCGEDHTAALTKEGGVFTFGAGGYGQLGHN 277

Query: 208 GKALESSP 215
             + E +P
Sbjct: 278 STSHEINP 285



 Score = 68.9 bits (167), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 67/273 (24%), Positives = 110/273 (40%), Gaps = 57/273 (20%)

Query: 87  AWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKS 146
            WG  +  QLG G ++      +P+R +      V         +  + DDG+++  G +
Sbjct: 3   CWGNASYGQLGLGGIDEEIVL-EPRRSDFFVNKKVRDVGCGLRHTVFVLDDGTVYTCGCN 61

Query: 147 KRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGN 206
             GQLG  K   +   P +V AL  + IV V+ G  H LA  + G+++ WG  +DG++G 
Sbjct: 62  DLGQLGHEKSRKK---PEQVVALDAQNIVAVACGEAHTLALNDKGQVYAWGLDSDGQLGL 118

Query: 207 LGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEV 266
            G   E   +  NI   S+                                      +++
Sbjct: 119 QGSE-ECIRVPRNIKSLSD--------------------------------------IQI 139

Query: 267 VDIACGFDHSLVLGRNGVLLSCGSNVYGQLG-----REKQDMGMFPVDINFHPVSISSGL 321
           V +ACG+ HSL L +   +   G N YGQLG     +++    +    +    + +++G 
Sbjct: 140 VQVACGYYHSLALSKASEVFCWGQNKYGQLGLGIDCQKQTSPQLIKSLLGIPFMQVAAGG 199

Query: 322 GHSLAICEVRSSNVTGGARGIVSWGWNRSSQLG 354
            HS  +          GA  I  WG N+  QLG
Sbjct: 200 AHSFVL-------TLSGA--IFGWGRNKFGQLG 223


>gi|350396381|ref|XP_003484535.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC4-like [Bombus
           impatiens]
          Length = 1088

 Score = 91.7 bits (226), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 81/301 (26%), Positives = 136/301 (45%), Gaps = 58/301 (19%)

Query: 68  SVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWN-DPKRVEGLDQVNVCAAFA 126
            V+ G YH++AV   G +++WG N+E QLG   L S+      P+ V+ L   ++    A
Sbjct: 120 KVACGAYHTIAVNEWGQLFSWGSNSEGQLG---LNSKNFMECSPRMVKTLG-TSIIVQVA 175

Query: 127 SGVVSS-AIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHAL 185
            G+  + A+ ++G L+ WG +  GQLGLG DI   + P  +  LAG  I  ++ G  H++
Sbjct: 176 CGMKHALALTNNGELYSWGSNSEGQLGLGVDIRSEVKPKLINTLAGVPIAFIACGGYHSI 235

Query: 186 AQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEG 245
           A ++ G +FGWG +  G++G          L+   +R+     +    T+  A+      
Sbjct: 236 AISKSGAIFGWGKNTFGQLG----------LNDTQNRNLPHQLQ----TLRNAK------ 275

Query: 246 MEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGM 305
                               +   ACG + S+ L  +G + +CG+ +YGQLG    +  +
Sbjct: 276 --------------------ICYAACGEEFSVFLTVDGGVFTCGAGMYGQLGHGSNNNEI 315

Query: 306 FPVDI----NFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPDNV 361
            P  +          IS G  H+LA+       V    R + +WG   + QLG     ++
Sbjct: 316 LPRQVMELMGSTVTQISCGKRHTLAL-------VPSQGR-VYAWGLGGAGQLGNNSTRSI 367

Query: 362 P 362
           P
Sbjct: 368 P 368



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 70/256 (27%), Positives = 116/256 (45%), Gaps = 51/256 (19%)

Query: 48  GVGGDAYEPTRVPGL-----PSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALE 102
           G+GG   E   VP        S++  ++ G  +++ +T++G +++ G N+  QLG     
Sbjct: 45  GLGGIEDEIILVPCQVDFKKASEIQQIACGENYTVVITHDGKIYSCGNNDYGQLGHERGR 104

Query: 103 SRATWNDPKRVEGLDQVNVCAAFASGVVSS-AIGDDGSLWVWGKSKRGQLGLGKDITEAI 161
            R      + + GLD   V    A G   + A+ + G L+ WG +  GQLGL        
Sbjct: 105 KRL-----QLILGLDAF-VFKKVACGAYHTIAVNEWGQLFSWGSNSEGQLGLNSKNFMEC 158

Query: 162 VPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNID 221
            P  V+ L    IV+V+ G  HALA T +G+L+ WG +++G++G LG           +D
Sbjct: 159 SPRMVKTLGTSIIVQVACGMKHALALTNNGELYSWGSNSEGQLG-LG-----------VD 206

Query: 222 RSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGR 281
             SE   ++ ++                           + GV +  IACG  HS+ + +
Sbjct: 207 IRSEVKPKLINT---------------------------LAGVPIAFIACGGYHSIAISK 239

Query: 282 NGVLLSCGSNVYGQLG 297
           +G +   G N +GQLG
Sbjct: 240 SGAIFGWGKNTFGQLG 255



 Score = 81.6 bits (200), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 55/179 (30%), Positives = 91/179 (50%), Gaps = 8/179 (4%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAW 88
           + S+G  S+G LGL   +          T + G+P  +  ++ G YHS+A++ +GA++ W
Sbjct: 190 LYSWGSNSEGQLGLGVDIRSEVKPKLINT-LAGVP--IAFIACGGYHSIAISKSGAIFGW 246

Query: 89  GRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKR 148
           G+N   QLG    ++R   N P +++ L    +C A      S  +  DG ++  G    
Sbjct: 247 GKNTFGQLGLNDTQNR---NLPHQLQTLRNAKICYAACGEEFSVFLTVDGGVFTCGAGMY 303

Query: 149 GQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQT-EDGKLFGWGYSADGRIGN 206
           GQLG G +  E I+P +V  L G  + ++S G  H LA     G+++ WG    G++GN
Sbjct: 304 GQLGHGSNNNE-ILPRQVMELMGSTVTQISCGKRHTLALVPSQGRVYAWGLGGAGQLGN 361



 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 59/179 (32%), Positives = 91/179 (50%), Gaps = 8/179 (4%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGL-PSDVTSVSAGHYHSLAVTNNGAVWA 87
           + S+G  S+G LGL +           P  V  L  S +  V+ G  H+LA+TNNG +++
Sbjct: 137 LFSWGSNSEGQLGLNSK----NFMECSPRMVKTLGTSIIVQVACGMKHALALTNNGELYS 192

Query: 88  WGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSK 147
           WG N+E QLG G ++ R+    PK +  L  V +      G  S AI   G+++ WGK+ 
Sbjct: 193 WGSNSEGQLGLG-VDIRSEVK-PKLINTLAGVPIAFIACGGYHSIAISKSGAIFGWGKNT 250

Query: 148 RGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGN 206
            GQLGL  D     +P +++ L   KI   + G   ++  T DG +F  G    G++G+
Sbjct: 251 FGQLGLN-DTQNRNLPHQLQTLRNAKICYAACGEEFSVFLTVDGGVFTCGAGMYGQLGH 308



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 78/293 (26%), Positives = 115/293 (39%), Gaps = 79/293 (26%)

Query: 78  AVTNNGAVWAWGRNNEVQLGRGALESR----ATWNDPKRVEGLDQVNVCAAFASGVVSSA 133
           ++   G ++ WG     +LG G +E          D K+   + Q+  C    + V++  
Sbjct: 26  SLLKKGDMFCWGNTRHGELGLGGIEDEIILVPCQVDFKKASEIQQI-ACGENYTVVITH- 83

Query: 134 IGDDGSLWVWGKSKRGQLG--LGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDG 191
              DG ++  G +  GQLG   G+   + I+      L      KV+ G  H +A  E G
Sbjct: 84  ---DGKIYSCGNNDYGQLGHERGRKRLQLIL-----GLDAFVFKKVACGAYHTIAVNEWG 135

Query: 192 KLFGWGYSADGRIG-NLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEK 250
           +LF WG +++G++G N    +E SP            + + +S I               
Sbjct: 136 QLFSWGSNSEGQLGLNSKNFMECSP---------RMVKTLGTSII--------------- 171

Query: 251 YMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLG---------REKQ 301
                           V +ACG  H+L L  NG L S GSN  GQLG         + K 
Sbjct: 172 ----------------VQVACGMKHALALTNNGELYSWGSNSEGQLGLGVDIRSEVKPKL 215

Query: 302 DMGMFPVDINFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLG 354
              +  V I F    I+ G  HS+AI +        GA  I  WG N   QLG
Sbjct: 216 INTLAGVPIAF----IACGGYHSIAISK-------SGA--IFGWGKNTFGQLG 255


>gi|37747571|gb|AAH60033.1| Herc4 protein [Mus musculus]
          Length = 1057

 Score = 91.7 bits (226), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 63/245 (25%), Positives = 113/245 (46%), Gaps = 43/245 (17%)

Query: 55  EPTRVPGLPS-DVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRV 113
           +P +V  L + ++ +V+ G  H+LA+ + G V+AWG +++ QLG     S      P+ +
Sbjct: 74  KPEQVVALDAQNIVAVACGEAHTLALNDKGQVYAWGLDSDGQLGLQG--SEECIRVPRNI 131

Query: 114 EGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEK 173
           + L  + +         S A+     ++ WG++K GQLGLG D  +   P  +++L G  
Sbjct: 132 KSLSDIQIVQVACGYYHSLALSKASEVFCWGQNKYGQLGLGIDCQKQTSPQLIKSLLGIP 191

Query: 174 IVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSS 233
            ++V+ G  H+   T  G +FGWG +  G++G          L+                
Sbjct: 192 FMQVAAGGAHSFVLTLSGAIFGWGRNKFGQLG----------LND--------------- 226

Query: 234 TIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVY 293
                        E ++Y+P + +   +   ++V I CG DH+  L + G + + G+  Y
Sbjct: 227 -------------ENDRYVPNLLKS--LRSQKIVYICCGEDHTAALTKEGGVFTFGAGGY 271

Query: 294 GQLGR 298
           GQLG 
Sbjct: 272 GQLGH 276



 Score = 80.9 bits (198), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 58/188 (30%), Positives = 96/188 (51%), Gaps = 8/188 (4%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPS-DVTSVSAGHYHSLAVTNNGAVWA 87
           V ++G  S G LGL  S   +      P  +  L    +  V+ G+YHSLA++    V+ 
Sbjct: 105 VYAWGLDSDGQLGLQGSEECIR----VPRNIKSLSDIQIVQVACGYYHSLALSKASEVFC 160

Query: 88  WGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSK 147
           WG+N   QLG G    + T   P+ ++ L  +      A G  S  +   G+++ WG++K
Sbjct: 161 WGQNKYGQLGLGIDCQKQT--SPQLIKSLLGIPFMQVAAGGAHSFVLTLSGAIFGWGRNK 218

Query: 148 RGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNL 207
            GQLGL  D  +  VP+ +++L  +KIV +  G  H  A T++G +F +G    G++G+ 
Sbjct: 219 FGQLGLN-DENDRYVPNLLKSLRSQKIVYICCGEDHTAALTKEGGVFTFGAGGYGQLGHN 277

Query: 208 GKALESSP 215
             + E +P
Sbjct: 278 STSHEINP 285



 Score = 68.9 bits (167), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 67/275 (24%), Positives = 111/275 (40%), Gaps = 57/275 (20%)

Query: 85  VWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWG 144
           +  WG  +  QLG G ++      +P+R +      V         +  + DDG+++  G
Sbjct: 1   MLCWGNASYGQLGLGGIDEEIVL-EPRRSDFFVNKKVRDVGCGLRHTVFVLDDGTVYTCG 59

Query: 145 KSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRI 204
            +  GQLG  K   +   P +V AL  + IV V+ G  H LA  + G+++ WG  +DG++
Sbjct: 60  CNDLGQLGHEKSRKK---PEQVVALDAQNIVAVACGEAHTLALNDKGQVYAWGLDSDGQL 116

Query: 205 GNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGV 264
           G  G   E   +  NI   S+                                      +
Sbjct: 117 GLQGSE-ECIRVPRNIKSLSD--------------------------------------I 137

Query: 265 EVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLG-----REKQDMGMFPVDINFHPVSISS 319
           ++V +ACG+ HSL L +   +   G N YGQLG     +++    +    +    + +++
Sbjct: 138 QIVQVACGYYHSLALSKASEVFCWGQNKYGQLGLGIDCQKQTSPQLIKSLLGIPFMQVAA 197

Query: 320 GLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLG 354
           G  HS  +          GA  I  WG N+  QLG
Sbjct: 198 GGAHSFVL-------TLSGA--IFGWGRNKFGQLG 223


>gi|148700105|gb|EDL32052.1| hect domain and RLD 4, isoform CRA_b [Mus musculus]
          Length = 1066

 Score = 91.7 bits (226), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 63/245 (25%), Positives = 113/245 (46%), Gaps = 43/245 (17%)

Query: 55  EPTRVPGLPS-DVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRV 113
           +P +V  L + ++ +V+ G  H+LA+ + G V+AWG +++ QLG     S      P+ +
Sbjct: 83  KPEQVVALDAQNIVAVACGEAHTLALNDKGQVYAWGLDSDGQLGLQG--SEECIRVPRNI 140

Query: 114 EGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEK 173
           + L  + +         S A+     ++ WG++K GQLGLG D  +   P  +++L G  
Sbjct: 141 KSLSDIQIVQVACGYYHSLALSKASEVFCWGQNKYGQLGLGIDCQKQTSPQLIKSLLGIP 200

Query: 174 IVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSS 233
            ++V+ G  H+   T  G +FGWG +  G++G          L+                
Sbjct: 201 FMQVAAGGAHSFVLTLSGAIFGWGRNKFGQLG----------LND--------------- 235

Query: 234 TIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVY 293
                        E ++Y+P + +   +   ++V I CG DH+  L + G + + G+  Y
Sbjct: 236 -------------ENDRYVPNLLKS--LRSQKIVYICCGEDHTAALTKEGGVFTFGAGGY 280

Query: 294 GQLGR 298
           GQLG 
Sbjct: 281 GQLGH 285



 Score = 80.9 bits (198), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 58/188 (30%), Positives = 96/188 (51%), Gaps = 8/188 (4%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPS-DVTSVSAGHYHSLAVTNNGAVWA 87
           V ++G  S G LGL  S   +      P  +  L    +  V+ G+YHSLA++    V+ 
Sbjct: 114 VYAWGLDSDGQLGLQGSEECIR----VPRNIKSLSDIQIVQVACGYYHSLALSKASEVFC 169

Query: 88  WGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSK 147
           WG+N   QLG G    + T   P+ ++ L  +      A G  S  +   G+++ WG++K
Sbjct: 170 WGQNKYGQLGLGIDCQKQT--SPQLIKSLLGIPFMQVAAGGAHSFVLTLSGAIFGWGRNK 227

Query: 148 RGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNL 207
            GQLGL  D  +  VP+ +++L  +KIV +  G  H  A T++G +F +G    G++G+ 
Sbjct: 228 FGQLGLN-DENDRYVPNLLKSLRSQKIVYICCGEDHTAALTKEGGVFTFGAGGYGQLGHN 286

Query: 208 GKALESSP 215
             + E +P
Sbjct: 287 STSHEINP 294



 Score = 69.3 bits (168), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 67/276 (24%), Positives = 112/276 (40%), Gaps = 57/276 (20%)

Query: 84  AVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVW 143
           ++  WG  +  QLG G ++      +P+R +      V         +  + DDG+++  
Sbjct: 9   SMLCWGNASYGQLGLGGIDEEIVL-EPRRSDFFVNKKVRDVGCGLRHTVFVLDDGTVYTC 67

Query: 144 GKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGR 203
           G +  GQLG  K   +   P +V AL  + IV V+ G  H LA  + G+++ WG  +DG+
Sbjct: 68  GCNDLGQLGHEKSRKK---PEQVVALDAQNIVAVACGEAHTLALNDKGQVYAWGLDSDGQ 124

Query: 204 IGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEG 263
           +G  G   E   +  NI   S+                                      
Sbjct: 125 LGLQGSE-ECIRVPRNIKSLSD-------------------------------------- 145

Query: 264 VEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLG-----REKQDMGMFPVDINFHPVSIS 318
           +++V +ACG+ HSL L +   +   G N YGQLG     +++    +    +    + ++
Sbjct: 146 IQIVQVACGYYHSLALSKASEVFCWGQNKYGQLGLGIDCQKQTSPQLIKSLLGIPFMQVA 205

Query: 319 SGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLG 354
           +G  HS  +          GA  I  WG N+  QLG
Sbjct: 206 AGGAHSFVL-------TLSGA--IFGWGRNKFGQLG 232


>gi|350585688|ref|XP_003482025.1| PREDICTED: LOW QUALITY PROTEIN: protein RCC2 [Sus scrofa]
          Length = 458

 Score = 91.7 bits (226), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 80/293 (27%), Positives = 129/293 (44%), Gaps = 35/293 (11%)

Query: 75  HSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAI 134
           HSL +T  G +W+WGRN + QLG G  +       P+ +EGL    + +A      +  +
Sbjct: 97  HSLLITTEGKLWSWGRNEKGQLGHGDTKR---VEXPRLLEGLSHEVIVSAACGRNHTLLL 153

Query: 135 GDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLF 194
            + GS++ +G++K GQLGLG        P+++    G+ I K++ G   ++     G L+
Sbjct: 154 PETGSVFAFGENKMGQLGLGNQTDAVPSPAQI-MYNGQPITKMACGAEFSMIMDCKGNLY 212

Query: 195 GWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPI 254
            +G    G++G+            N D    +  +      E   + V+  +EK K   I
Sbjct: 213 SFGCPEYGQLGH------------NSDGKFIARAQRIEYDCELVPRRVAIFIEKTKDGQI 260

Query: 255 IWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFHP 314
           +  P +V    V D+ACG +H+LVL     + S G   YG+LG  +Q   M P  +    
Sbjct: 261 LPVPNVV----VRDVACGANHTLVLDSQKRVFSWGFGGYGRLGHAEQKDEMVPRLVKLFD 316

Query: 315 V------SISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPDNV 361
                   I +G   S A+ EV          G+  WG   +S+   M P  V
Sbjct: 317 FPGRGASQIYAGYTCSFAVSEV---------GGLFFWGATNTSRESTMYPKAV 360



 Score = 48.9 bits (115), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 54/186 (29%), Positives = 78/186 (41%), Gaps = 31/186 (16%)

Query: 56  PTRVPGLPSDV-TSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVE 114
           P  + GL  +V  S + G  H+L +   G+V+A+G N   QLG G      T   P   +
Sbjct: 129 PRLLEGLSHEVIVSAACGRNHTLLLPETGSVFAFGENKMGQLGLG----NQTDAVPSPAQ 184

Query: 115 GLDQVNVCAAFASGVVSSAIGD-DGSLWVWGKSKRGQLGL---GKDITEA--------IV 162
            +         A G   S I D  G+L+ +G  + GQLG    GK I  A        +V
Sbjct: 185 IMYNGQPITKMACGAEFSMIMDCKGNLYSFGCPEYGQLGHNSDGKFIARAQRIEYDCELV 244

Query: 163 PSRVEALAGEK-------------IVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGK 209
           P RV A+  EK             +  V+ G  H L      ++F WG+   GR+G+  +
Sbjct: 245 PRRV-AIFIEKTKDGQILPVPNVVVRDVACGANHTLVLDSQKRVFSWGFGGYGRLGHAEQ 303

Query: 210 ALESSP 215
             E  P
Sbjct: 304 KDEMVP 309


>gi|332243760|ref|XP_003271040.1| PREDICTED: X-linked retinitis pigmentosa GTPase regulator [Nomascus
           leucogenys]
          Length = 814

 Score = 91.3 bits (225), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 80/267 (29%), Positives = 124/267 (46%), Gaps = 51/267 (19%)

Query: 32  FGDGSQGALGLPTSLTGVGGDAYEPTRVPGL-PSDVTSVSAGHYHSLAVTNNGAVWAWGR 90
           FG  + G LGL     G      +PT V  L P  V   + G  H+L  T  G V+A G 
Sbjct: 59  FGSNNWGQLGL-----GSKSAVSKPTCVKALKPEKVKLAACGRNHTLVSTEGGNVYATGG 113

Query: 91  NNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQ 150
           NNE QLG G  E R T++         ++   +A ++   S+A+ +DG L++WG +  GQ
Sbjct: 114 NNEGQLGLGDTEERNTFHVISFFTSEHKIKQLSAGSN--TSAALTEDGRLFMWGDNSEGQ 171

Query: 151 LGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKA 210
           +GL K++T   VP +V    G+ +  +S G+ H+   T DG+L+ +G   +G++G   + 
Sbjct: 172 IGL-KNVTNVCVPQQV--TIGKPVSWISCGYYHSAFVTTDGELYVFGEPENGKLGLPNQL 228

Query: 211 LESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIA 270
           L +                       +  +LVSE  EK                 V+ +A
Sbjct: 229 LGN----------------------HRTPQLVSEIPEK-----------------VIQVA 249

Query: 271 CGFDHSLVLGRNGVLLSCGSNVYGQLG 297
           CG +H++VL  N V  + G   +GQLG
Sbjct: 250 CGGEHTVVLTENAV-YTFGLGQFGQLG 275



 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 49/140 (35%), Positives = 75/140 (53%), Gaps = 9/140 (6%)

Query: 69  VSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGL--DQVNVCAAFA 126
           +S G  HS  VT N  ++ +G NN  QLG G   S++  + P  V+ L  ++V + A   
Sbjct: 40  LSCGDEHSAVVTGNNKLYMFGSNNWGQLGLG---SKSAVSKPTCVKALKPEKVKLAACGR 96

Query: 127 SGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGE-KIVKVSFGWGHAL 185
           +  + S  G  G+++  G +  GQLGLG D  E      +     E KI ++S G   + 
Sbjct: 97  NHTLVSTEG--GNVYATGGNNEGQLGLG-DTEERNTFHVISFFTSEHKIKQLSAGSNTSA 153

Query: 186 AQTEDGKLFGWGYSADGRIG 205
           A TEDG+LF WG +++G+IG
Sbjct: 154 ALTEDGRLFMWGDNSEGQIG 173



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 55/184 (29%), Positives = 93/184 (50%), Gaps = 18/184 (9%)

Query: 33  GDGSQGALGLPTSLTGVGGDAYEPTRVP-GLPSDVTSVSAGHYHSLAVTNNGAVWAWGRN 91
           GD S+G +GL  ++T V      P +V  G P  V+ +S G+YHS  VT +G ++ +G  
Sbjct: 165 GDNSEGQIGL-KNVTNVCV----PQQVTIGKP--VSWISCGYYHSAFVTTDGELYVFG-- 215

Query: 92  NEVQLGRGALESRATWND--PKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRG 149
            E + G+  L ++   N   P+ V  + +  +    A G   + +  + +++ +G  + G
Sbjct: 216 -EPENGKLGLPNQLLGNHRTPQLVSEIPEKVI--QVACGGEHTVVLTENAVYTFGLGQFG 272

Query: 150 QLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGK 209
           QLGLG  + E   P  +E +  + I  +S G  H    T+ G ++ +G   DGR G LG 
Sbjct: 273 QLGLGTFLFETSDPKVIENIRDQTISYISCGESHTALITDIGLMYTFG---DGRHGKLGL 329

Query: 210 ALES 213
            LE+
Sbjct: 330 GLEN 333


>gi|348570860|ref|XP_003471214.1| PREDICTED: protein RCC2-like [Cavia porcellus]
          Length = 453

 Score = 91.3 bits (225), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 79/293 (26%), Positives = 129/293 (44%), Gaps = 35/293 (11%)

Query: 75  HSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAI 134
           HSL +T  G +W+WGRN + QLG G  +       P+ ++GL    +  A      + A+
Sbjct: 92  HSLLITTEGKLWSWGRNEKGQLGHGDTKRVEA---PRLIDGLSHEVIVLAACGRNHTLAL 148

Query: 135 GDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLF 194
            + GS++ +G++K GQLGLG        P+++    G+ I K++ G   ++     G L+
Sbjct: 149 TETGSVFAFGENKMGQLGLGNQTDAVPSPAQI-MYNGQPITKMACGAEFSMIMDCKGNLY 207

Query: 195 GWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPI 254
            +G    G++G+            N D    +  +      E   + V+  +EK K   I
Sbjct: 208 SFGCPEYGQLGH------------NSDGKFIARAQRIEYDCELVPRRVAIFIEKTKDGQI 255

Query: 255 IWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFHP 314
           +  P +V    V D+ACG +H+L+L     + S G   YG+LG  +Q   M P  +    
Sbjct: 256 LPVPNVV----VRDVACGANHTLILDSQKRVFSWGFGGYGRLGHAEQKDEMVPRLVKLFD 311

Query: 315 V------SISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPDNV 361
                   I +G   S A+ EV          G+  WG   +S+   M P  V
Sbjct: 312 FPGRGASQIYAGYTCSFAVSEV---------GGLFFWGATNTSRESTMYPKAV 355



 Score = 52.8 bits (125), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 56/186 (30%), Positives = 81/186 (43%), Gaps = 31/186 (16%)

Query: 56  PTRVPGLPSDVTSVSA-GHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVE 114
           P  + GL  +V  ++A G  H+LA+T  G+V+A+G N   QLG G      T   P   +
Sbjct: 124 PRLIDGLSHEVIVLAACGRNHTLALTETGSVFAFGENKMGQLGLG----NQTDAVPSPAQ 179

Query: 115 GLDQVNVCAAFASGVVSSAIGD-DGSLWVWGKSKRGQLGL---GKDITEA--------IV 162
            +         A G   S I D  G+L+ +G  + GQLG    GK I  A        +V
Sbjct: 180 IMYNGQPITKMACGAEFSMIMDCKGNLYSFGCPEYGQLGHNSDGKFIARAQRIEYDCELV 239

Query: 163 PSRVEALAGEK-------------IVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGK 209
           P RV A+  EK             +  V+ G  H L      ++F WG+   GR+G+  +
Sbjct: 240 PRRV-AIFIEKTKDGQILPVPNVVVRDVACGANHTLILDSQKRVFSWGFGGYGRLGHAEQ 298

Query: 210 ALESSP 215
             E  P
Sbjct: 299 KDEMVP 304


>gi|281202576|gb|EFA76778.1| regulator of chromosome condensation domain-containing protein
           [Polysphondylium pallidum PN500]
          Length = 2305

 Score = 91.3 bits (225), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 68/207 (32%), Positives = 107/207 (51%), Gaps = 21/207 (10%)

Query: 10  NHVNVLTSRIFMRSAS----GTAVVSFGDGSQGALGLPTSLTGVGGDAYE-PTRVPGLP- 63
           N VN   S + MRSA+       ++++G GS   LG  +    V  D+   P R+P    
Sbjct: 521 NAVNSAESSLSMRSATQLDTSRGLMTWGSGSYCKLGFKS----VEKDSQPTPERLPNFNI 576

Query: 64  SDVTSVSAGHYHSLAVTNNGAVWAWGR----NNEV-QLGRGALESRATWNDPKRVEGLDQ 118
           SD+ S+S G Y+S A+T NG V+ WGR    N  +  LG G  + +     P++VE L +
Sbjct: 577 SDICSISCGSYYSAALTENGDVYMWGRGSVKNPPIATLGNGTFDDQLL---PQKVESLQE 633

Query: 119 VNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVS 178
           + V +       S+A+  +G L  WG  + GQLG G D+    +P  V+++    + +V 
Sbjct: 634 IVVIS--IGFYHSAAVKSNGELLTWGCGEDGQLGHG-DVFNQPIPKVVQSITSHWVTQVQ 690

Query: 179 FGWGHALAQTEDGKLFGWGYSADGRIG 205
            G  H +  T++GK+F WG S  G++G
Sbjct: 691 CGEKHTICLTKNGKVFTWGTSEYGQLG 717



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 57/262 (21%), Positives = 114/262 (43%), Gaps = 53/262 (20%)

Query: 85  VWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWG 144
           +  WG  +  +LG  ++E + +   P+R+   +  ++C+       S+A+ ++G +++WG
Sbjct: 544 LMTWGSGSYCKLGFKSVE-KDSQPTPERLPNFNISDICSISCGSYYSAALTENGDVYMWG 602

Query: 145 K-----SKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYS 199
           +          LG G    + ++P +VE+L  ++IV +S G+ H+ A   +G+L  WG  
Sbjct: 603 RGSVKNPPIATLGNGT-FDDQLLPQKVESL--QEIVVISIGFYHSAAVKSNGELLTWGCG 659

Query: 200 ADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPF 259
            DG++G+                      ++ +  I K  + ++            W   
Sbjct: 660 EDGQLGH---------------------GDVFNQPIPKVVQSITSH----------W--- 685

Query: 260 LVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDIN----FHPV 315
                 V  + CG  H++ L +NG + + G++ YGQLG         P+ +     +H +
Sbjct: 686 ------VTQVQCGEKHTICLTKNGKVFTWGTSEYGQLGLGDTQKNCTPMLVTSLDKYHII 739

Query: 316 SISSGLGHSLAICEVRSSNVTG 337
            I+ G  H+  +   R   V G
Sbjct: 740 QIACGATHNAVLTNNREVLVFG 761



 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 76/298 (25%), Positives = 128/298 (42%), Gaps = 20/298 (6%)

Query: 48  GVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATW 107
           G   D   P +V  L  ++  +S G YHS AV +NG +  WG   + QLG G + ++   
Sbjct: 617 GTFDDQLLPQKVESL-QEIVVISIGFYHSAAVKSNGELLTWGCGEDGQLGHGDVFNQPI- 674

Query: 108 NDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVE 167
             PK V+ +    V         +  +  +G ++ WG S+ GQLGLG D  +   P  V 
Sbjct: 675 --PKVVQSITSHWVTQVQCGEKHTICLTKNGKVFTWGTSEYGQLGLG-DTQKNCTPMLVT 731

Query: 168 ALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESD 227
           +L    I++++ G  H    T + ++  +G  A     N+       P    ++    S 
Sbjct: 732 SLDKYHIIQIACGATHNAVLTNNREVLVFGNGAAMGSANIISIPIMVPSLKIMNIERLSC 791

Query: 228 QEISSSTIEKAQKLVSEGMEKEK---YMPIIWEPFLVEGVE---VVDIACGFDHSLVLGR 281
              S++ + +   + + G  +E    +      P LVE +    +  I+CG  H   L  
Sbjct: 792 GHYSTAALTECGDVYTWGSGQELGHGHGTSEAHPKLVETLRNQSIRQISCGGRHMAFLTD 851

Query: 282 NGVLLSCGSNVYGQLGREKQDMGMFPVDIN------FHPVSISSGLGHSLAICEVRSS 333
           +G + + G + +GQLG    D    P  I+      F  +SIS G  H+ A+ +   S
Sbjct: 852 SGKIYTSGKDPFGQLGHAAGDQNR-PKKIDSLLKTTF--MSISCGENHNAALFDTTRS 906



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/140 (27%), Positives = 62/140 (44%), Gaps = 8/140 (5%)

Query: 56  PTRVPGLP-SDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVE 114
           P  VP L   ++  +S GHY + A+T  G V+ WG   E+  G G  E+      PK VE
Sbjct: 775 PIMVPSLKIMNIERLSCGHYSTAALTECGDVYTWGSGQELGHGHGTSEAH-----PKLVE 829

Query: 115 GLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKI 174
            L   ++      G   + + D G ++  GK   GQLG      +   P ++++L     
Sbjct: 830 TLRNQSIRQISCGGRHMAFLTDSGKIYTSGKDPFGQLGHAAG--DQNRPKKIDSLLKTTF 887

Query: 175 VKVSFGWGHALAQTEDGKLF 194
           + +S G  H  A  +  + F
Sbjct: 888 MSISCGENHNAALFDTTRSF 907


>gi|432847192|ref|XP_004065976.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC3-like [Oryzias
           latipes]
          Length = 1049

 Score = 91.3 bits (225), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 72/247 (29%), Positives = 113/247 (45%), Gaps = 19/247 (7%)

Query: 66  VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAF 125
           +T VS G  HS+AV   G V+ WG  +  QLG    E+      P+ ++ L   ++    
Sbjct: 85  ITMVSCGRAHSVAVNEQGQVFVWGAGDGGQLGLETAETAVRI--PRLLKKLCDHSISQVV 142

Query: 126 ASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHAL 185
                  A+  DG L+ WG++  GQLGLGK  T  + PS V++LAG  + +++ G  H  
Sbjct: 143 CGNQHCIALSRDGQLFTWGQNSSGQLGLGKGETSKLSPSPVKSLAGIPLAQITAGGDHCF 202

Query: 186 AQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSE----SDQEISSSTIEKAQKL 241
           A +  G +FGWG +  G++G   K   + P      RS      S  +  ++ + K+  L
Sbjct: 203 ALSLSGAVFGWGKNKAGQLGLNDKQDRAVPCHIKFLRSQRVVYISCGDEHTAALTKSGGL 262

Query: 242 VS----------EGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVL-GRNGVLLSCGS 290
            +           G    + +P       + G EV  I CG  H+L     +G + + G 
Sbjct: 263 FTFGDGSRGQLGHGSSNNELLP--RRVMELMGTEVSQITCGRHHTLAFVPSSGTVYAFGC 320

Query: 291 NVYGQLG 297
           N +GQLG
Sbjct: 321 NSHGQLG 327



 Score = 83.6 bits (205), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 91/335 (27%), Positives = 141/335 (42%), Gaps = 58/335 (17%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSD--VTSVSAGHYHSLAVTNNGAVW 86
           ++ +G+   G LG+     GV G+     R+  + S   +  V+ G  H+L +  +G+V+
Sbjct: 1   MLCWGNARDGQLGI-----GVEGNPVFEPRICHVFSGRGLKEVACGGQHTLFLLQDGSVY 55

Query: 87  AWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKS 146
             G N+  QLG          N P+ V  LD   +         S A+ + G ++VWG  
Sbjct: 56  TCGSNSCGQLGHDK-----AGNSPELVGALDTQKITMVSCGRAHSVAVNEQGQVFVWGAG 110

Query: 147 KRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGN 206
             GQLGL    T   +P  ++ L    I +V  G  H +A + DG+LF WG ++ G++G 
Sbjct: 111 DGGQLGLETAETAVRIPRLLKKLCDHSISQVVCGNQHCIALSRDGQLFTWGQNSSGQLG- 169

Query: 207 LGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEV 266
           LGK  E+S L  +  +S                                     + G+ +
Sbjct: 170 LGKG-ETSKLSPSPVKS-------------------------------------LAGIPL 191

Query: 267 VDIACGFDHSLVLGRNGVLLSCGSNVYGQLG-REKQDMGMFPVDINF----HPVSISSGL 321
             I  G DH   L  +G +   G N  GQLG  +KQD  + P  I F      V IS G 
Sbjct: 192 AQITAGGDHCFALSLSGAVFGWGKNKAGQLGLNDKQDRAV-PCHIKFLRSQRVVYISCGD 250

Query: 322 GHSLAICEVRSSNVTG-GARGIVSWGWNRSSQLGR 355
            H+ A+ +       G G+RG +  G + +  L R
Sbjct: 251 EHTAALTKSGGLFTFGDGSRGQLGHGSSNNELLPR 285



 Score = 45.1 bits (105), Expect = 0.063,   Method: Compositional matrix adjust.
 Identities = 29/75 (38%), Positives = 45/75 (60%), Gaps = 7/75 (9%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLP-SDVTSVSAGHYHSLA-VTNNGAVW 86
           + +FGDGS+G LG      G   +   P RV  L  ++V+ ++ G +H+LA V ++G V+
Sbjct: 262 LFTFGDGSRGQLG-----HGSSNNELLPRRVMELMGTEVSQITCGRHHTLAFVPSSGTVY 316

Query: 87  AWGRNNEVQLGRGAL 101
           A+G N+  QLG G L
Sbjct: 317 AFGCNSHGQLGTGIL 331


>gi|32451488|ref|NP_080377.2| probable E3 ubiquitin-protein ligase HERC4 isoform 2 [Mus musculus]
 gi|29144941|gb|AAH43082.1| Hect domain and RLD 4 [Mus musculus]
 gi|74188723|dbj|BAE28095.1| unnamed protein product [Mus musculus]
 gi|148700106|gb|EDL32053.1| hect domain and RLD 4, isoform CRA_c [Mus musculus]
          Length = 1049

 Score = 91.3 bits (225), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 63/245 (25%), Positives = 113/245 (46%), Gaps = 43/245 (17%)

Query: 55  EPTRVPGLPS-DVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRV 113
           +P +V  L + ++ +V+ G  H+LA+ + G V+AWG +++ QLG     S      P+ +
Sbjct: 74  KPEQVVALDAQNIVAVACGEAHTLALNDKGQVYAWGLDSDGQLGLQG--SEECIRVPRNI 131

Query: 114 EGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEK 173
           + L  + +         S A+     ++ WG++K GQLGLG D  +   P  +++L G  
Sbjct: 132 KSLSDIQIVQVACGYYHSLALSKASEVFCWGQNKYGQLGLGIDCQKQTSPQLIKSLLGIP 191

Query: 174 IVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSS 233
            ++V+ G  H+   T  G +FGWG +  G++G          L+                
Sbjct: 192 FMQVAAGGAHSFVLTLSGAIFGWGRNKFGQLG----------LND--------------- 226

Query: 234 TIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVY 293
                        E ++Y+P + +   +   ++V I CG DH+  L + G + + G+  Y
Sbjct: 227 -------------ENDRYVPNLLKS--LRSQKIVYICCGEDHTAALTKEGGVFTFGAGGY 271

Query: 294 GQLGR 298
           GQLG 
Sbjct: 272 GQLGH 276



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 58/188 (30%), Positives = 96/188 (51%), Gaps = 8/188 (4%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPS-DVTSVSAGHYHSLAVTNNGAVWA 87
           V ++G  S G LGL  S   +      P  +  L    +  V+ G+YHSLA++    V+ 
Sbjct: 105 VYAWGLDSDGQLGLQGSEECIR----VPRNIKSLSDIQIVQVACGYYHSLALSKASEVFC 160

Query: 88  WGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSK 147
           WG+N   QLG G    + T   P+ ++ L  +      A G  S  +   G+++ WG++K
Sbjct: 161 WGQNKYGQLGLGIDCQKQT--SPQLIKSLLGIPFMQVAAGGAHSFVLTLSGAIFGWGRNK 218

Query: 148 RGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNL 207
            GQLGL  D  +  VP+ +++L  +KIV +  G  H  A T++G +F +G    G++G+ 
Sbjct: 219 FGQLGLN-DENDRYVPNLLKSLRSQKIVYICCGEDHTAALTKEGGVFTFGAGGYGQLGHN 277

Query: 208 GKALESSP 215
             + E +P
Sbjct: 278 STSHEINP 285



 Score = 68.9 bits (167), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 67/275 (24%), Positives = 111/275 (40%), Gaps = 57/275 (20%)

Query: 85  VWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWG 144
           +  WG  +  QLG G ++      +P+R +      V         +  + DDG+++  G
Sbjct: 1   MLCWGNASYGQLGLGGIDEEIVL-EPRRSDFFVNKKVRDVGCGLRHTVFVLDDGTVYTCG 59

Query: 145 KSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRI 204
            +  GQLG  K   +   P +V AL  + IV V+ G  H LA  + G+++ WG  +DG++
Sbjct: 60  CNDLGQLGHEKSRKK---PEQVVALDAQNIVAVACGEAHTLALNDKGQVYAWGLDSDGQL 116

Query: 205 GNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGV 264
           G  G   E   +  NI   S+                                      +
Sbjct: 117 GLQGSE-ECIRVPRNIKSLSD--------------------------------------I 137

Query: 265 EVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLG-----REKQDMGMFPVDINFHPVSISS 319
           ++V +ACG+ HSL L +   +   G N YGQLG     +++    +    +    + +++
Sbjct: 138 QIVQVACGYYHSLALSKASEVFCWGQNKYGQLGLGIDCQKQTSPQLIKSLLGIPFMQVAA 197

Query: 320 GLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLG 354
           G  HS  +          GA  I  WG N+  QLG
Sbjct: 198 GGAHSFVL-------TLSGA--IFGWGRNKFGQLG 223


>gi|332835959|ref|XP_003312986.1| PREDICTED: secretion-regulating guanine nucleotide exchange factor
           [Pan troglodytes]
 gi|410207628|gb|JAA01033.1| secretion regulating guanine nucleotide exchange factor [Pan
           troglodytes]
 gi|410251648|gb|JAA13791.1| secretion regulating guanine nucleotide exchange factor [Pan
           troglodytes]
 gi|410291376|gb|JAA24288.1| secretion regulating guanine nucleotide exchange factor [Pan
           troglodytes]
 gi|410352341|gb|JAA42774.1| secretion regulating guanine nucleotide exchange factor [Pan
           troglodytes]
          Length = 458

 Score = 91.3 bits (225), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 91/313 (29%), Positives = 134/313 (42%), Gaps = 43/313 (13%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAW 88
           V+S G  S G LG+P            P  +      V  ++AG  H+LA T +G V+ W
Sbjct: 122 VLSCGSNSFGQLGVPHGPR----RCVVPQAIEFHKEKVVCIAAGLRHALAATASGIVFQW 177

Query: 89  GRNNEVQLGRGALESRA-----TWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVW 143
           G       GR     +      T  +P RV GL+        A    S+++ D G ++VW
Sbjct: 178 G-TGLAPCGRRLCPGQTLPLFFTAKEPSRVTGLENSKAMCVLAGSDHSASLTDAGEVYVW 236

Query: 144 GKSKRGQLGLGKDITEAIVPSRVEA--LAGEKIVKVSFGWGHALAQTEDGKLFGWGYSAD 201
           G +K GQL    +     VP ++EA     EK+  +  GW H +AQTE GK+F WG  AD
Sbjct: 237 GSNKHGQLA--NEAAFLPVPQKIEAHCFQNEKVTAIWSGWTHLVAQTETGKMFTWG-RAD 293

Query: 202 GRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLV 261
              G LG+ LE+                     +EK    +         MP    P  +
Sbjct: 294 --YGQLGRKLET----------------YEGWKLEKQDSFLP-CSRPPNSMPS--SPHCL 332

Query: 262 EGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQL--GREKQDMGMFPVD--INFHPVSI 317
            G    +++CG +H+L +   GV  S G N +G    G E       PV   ++   + +
Sbjct: 333 TG--ATEVSCGSEHNLAI-IGGVCYSWGWNEHGMCGDGTEANVWAPKPVQALLSSSGLLV 389

Query: 318 SSGLGHSLAICEV 330
             G GHSLA+C++
Sbjct: 390 GCGAGHSLALCQL 402



 Score = 65.5 bits (158), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 93/352 (26%), Positives = 138/352 (39%), Gaps = 64/352 (18%)

Query: 63  PSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVC 122
           P  V  ++ G  HS  VT+ G ++  G N + QLG G  E    +   K + G     V 
Sbjct: 48  PRSVRRITGGGGHSAVVTDGGDLFVCGLNKDGQLGLGHTEDIPYFTPCKSLFGCPIQQVA 107

Query: 123 AAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWG 182
             +   ++   + ++G +   G +  GQLG+       +VP  +E    EK+V ++ G  
Sbjct: 108 CGWDFTIM---LTENGQVLSCGSNSFGQLGVPHGPRRCVVPQAIE-FHKEKVVCIAAGLR 163

Query: 183 HALAQTEDGKLFGW--GYSADGRIGNLGKALESSPLDSNIDRSS-----ESDQEIS---- 231
           HALA T  G +F W  G +  GR    G+ L   PL       S     E+ + +     
Sbjct: 164 HALAATASGIVFQWGTGLAPCGRRLCPGQTL---PLFFTAKEPSRVTGLENSKAMCVLAG 220

Query: 232 ---SSTIEKAQKLVSEGMEKE-------KYMPIIW--EPFLVEGVEVVDIACGFDHSLVL 279
              S+++  A ++   G  K         ++P+    E    +  +V  I  G+ H +  
Sbjct: 221 SDHSASLTDAGEVYVWGSNKHGQLANEAAFLPVPQKIEAHCFQNEKVTAIWSGWTHLVAQ 280

Query: 280 GRNGVLLSCGSNVYGQLGR----------EKQDMGMFPVD--INFHPVS---------IS 318
              G + + G   YGQLGR          EKQD    P     N  P S         +S
Sbjct: 281 TETGKMFTWGRADYGQLGRKLETYEGWKLEKQD-SFLPCSRPPNSMPSSPHCLTGATEVS 339

Query: 319 SGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPDNV--PLVVEGL 368
            G  H+LAI         GG     SWGWN     G     NV  P  V+ L
Sbjct: 340 CGSEHNLAI--------IGGV--CYSWGWNEHGMCGDGTEANVWAPKPVQAL 381



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 53/183 (28%), Positives = 83/183 (45%), Gaps = 46/183 (25%)

Query: 149 GQLGLGKDITEAIVPSRVEALAGEKIVK-VSFGWGHALAQTEDGKLFGWGYSADGRIGNL 207
           GQLGLG    + ++P ++      + V+ ++ G GH+   T+ G LF  G + DG++G L
Sbjct: 26  GQLGLGHK-EDVLLPQQLNDFCKPRSVRRITGGGGHSAVVTDGGDLFVCGLNKDGQLG-L 83

Query: 208 GKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVV 267
           G                   ++I   T  K+                      + G  + 
Sbjct: 84  GHT-----------------EDIPYFTPCKS----------------------LFGCPIQ 104

Query: 268 DIACGFDHSLVLGRNGVLLSCGSNVYGQLG-REKQDMGMFPVDINFHP---VSISSGLGH 323
            +ACG+D +++L  NG +LSCGSN +GQLG        + P  I FH    V I++GL H
Sbjct: 105 QVACGWDFTIMLTENGQVLSCGSNSFGQLGVPHGPRRCVVPQAIEFHKEKVVCIAAGLRH 164

Query: 324 SLA 326
           +LA
Sbjct: 165 ALA 167


>gi|149043903|gb|EDL97354.1| rCG61079, isoform CRA_c [Rattus norvegicus]
          Length = 928

 Score = 91.3 bits (225), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 76/316 (24%), Positives = 136/316 (43%), Gaps = 49/316 (15%)

Query: 55  EPTRVPGLPS-DVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRV 113
           +P +V  L + ++ +VS G  H+LA+ + G V+AWG +++ QLG     S      P+ +
Sbjct: 74  KPEQVVALDAQNIVAVSCGEAHTLALNDKGQVYAWGLDSDGQLGLQG--SEECIRVPRNI 131

Query: 114 EGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEK 173
           + L  + +         S A+     ++ WG++K GQLGLG +  +   P  +++L G  
Sbjct: 132 KSLSDIQIVQVACGYYHSLALSKASEVFCWGQNKYGQLGLGIECQKQTSPQLIKSLLGIP 191

Query: 174 IVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSS 233
            ++V+ G  H+   T  G +FGWG +  G++G          L+                
Sbjct: 192 FMQVAAGGAHSFVLTLSGAIFGWGRNKFGQLG----------LND--------------- 226

Query: 234 TIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVY 293
                        E ++Y+P + +   +   ++V I CG DH+  L + G + + G+  Y
Sbjct: 227 -------------ENDRYVPNLLKS--LRSQKIVYICCGEDHTAALTKEGGVFTFGAGGY 271

Query: 294 GQLGREKQDMGMFPVDINFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQL 353
           GQLG       + P  +      +   +   +A     +S     +  I S+G   + QL
Sbjct: 272 GQLGHNSTSHEINPRKV----FELMGSIVTQIACGRQHTSAFVPSSGRIYSFGLGGNGQL 327

Query: 354 GRMGPDN--VPLVVEG 367
           G     N   P  V+G
Sbjct: 328 GTGSTSNRKSPFTVKG 343



 Score = 81.6 bits (200), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 58/188 (30%), Positives = 96/188 (51%), Gaps = 8/188 (4%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPS-DVTSVSAGHYHSLAVTNNGAVWA 87
           V ++G  S G LGL  S   +      P  +  L    +  V+ G+YHSLA++    V+ 
Sbjct: 105 VYAWGLDSDGQLGLQGSEECIR----VPRNIKSLSDIQIVQVACGYYHSLALSKASEVFC 160

Query: 88  WGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSK 147
           WG+N   QLG G    + T   P+ ++ L  +      A G  S  +   G+++ WG++K
Sbjct: 161 WGQNKYGQLGLGIECQKQT--SPQLIKSLLGIPFMQVAAGGAHSFVLTLSGAIFGWGRNK 218

Query: 148 RGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNL 207
            GQLGL  D  +  VP+ +++L  +KIV +  G  H  A T++G +F +G    G++G+ 
Sbjct: 219 FGQLGLN-DENDRYVPNLLKSLRSQKIVYICCGEDHTAALTKEGGVFTFGAGGYGQLGHN 277

Query: 208 GKALESSP 215
             + E +P
Sbjct: 278 STSHEINP 285



 Score = 68.6 bits (166), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 70/295 (23%), Positives = 120/295 (40%), Gaps = 59/295 (20%)

Query: 85  VWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWG 144
           +  WG  +  QLG G ++      +P++ +      V         +  + DDG+++  G
Sbjct: 1   MLCWGNASYGQLGLGGIDEEIVL-EPRKSDFFVNKKVRDVGCGLRHTVFVLDDGTVYTCG 59

Query: 145 KSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRI 204
            +  GQLG  K   +   P +V AL  + IV VS G  H LA  + G+++ WG  +DG++
Sbjct: 60  CNDLGQLGHEKSRKK---PEQVVALDAQNIVAVSCGEAHTLALNDKGQVYAWGLDSDGQL 116

Query: 205 GNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGV 264
           G  G   E   +  NI   S+                                      +
Sbjct: 117 GLQGSE-ECIRVPRNIKSLSD--------------------------------------I 137

Query: 265 EVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLG-----REKQDMGMFPVDINFHPVSISS 319
           ++V +ACG+ HSL L +   +   G N YGQLG     +++    +    +    + +++
Sbjct: 138 QIVQVACGYYHSLALSKASEVFCWGQNKYGQLGLGIECQKQTSPQLIKSLLGIPFMQVAA 197

Query: 320 GLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPDN--VPLVVEGLEGES 372
           G  HS  +          GA  I  WG N+  QLG    ++  VP +++ L  + 
Sbjct: 198 GGAHSFVL-------TLSGA--IFGWGRNKFGQLGLNDENDRYVPNLLKSLRSQK 243


>gi|219129772|ref|XP_002185055.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217403550|gb|EEC43502.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 727

 Score = 91.3 bits (225), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 96/341 (28%), Positives = 144/341 (42%), Gaps = 62/341 (18%)

Query: 24  ASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPG---LPSDVTSVSAGH-----YH 75
           A G+ V ++G G +G LG      G   D   P R+ G       +  VSAG       H
Sbjct: 230 AGGSGVAAWGVGRRGQLG-----HGKRRDERLPRRLRGGIGYAVRIVQVSAGGGLVRVAH 284

Query: 76  SLAVTNNGAVWAWGRNNEVQLGRG--ALESRATWNDPKRVEGLDQVNVCAAFASGVVSSA 133
           SL +T+ G V ++G      LG G  A +       P+ VEGL  V VC   A  + S+ 
Sbjct: 285 SLLLTSTGRVLSFGTGQYGALGHGYSAAKQLPDVMRPQYVEGLAHVRVCCVAAGELHSAV 344

Query: 134 IGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEA--LAGEKIVKVSFGWGHALAQTEDG 191
           +  DG ++ WG    GQLG   D    + P +V A  L  E +  +S G  H LA TEDG
Sbjct: 345 VTSDGDVYTWGDGFCGQLGHA-DKRPQLAPRQVTAGGLEDEVVASISCGSRHTLAVTEDG 403

Query: 192 KLFGWG---------------YSADGRIGNLGKALESSPLD-----------SNIDRSSE 225
           ++F WG               Y AD  + N     E+ P+D            N+  + +
Sbjct: 404 EVFSWGLGHFGVLGRSFTPFDYDADAAVVNF-TVEETLPVDGAVPIPVARIPDNVAPAVD 462

Query: 226 S--DQEISSSTIEKAQKLVSEGM-------------EKEKYMPIIWEPFLVEGVEVVDIA 270
           S   ++ ++  + + +   +E M               ++ +P + E    +G+ +V  +
Sbjct: 463 SFPPRDAAAPALLEGRNFAAELMAHLDLIANLSLDDSSDQCIPKVIESL--QGIPMVGAS 520

Query: 271 CGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDIN 311
            G  HSL+L + G L SCG+   G LG       M PV I 
Sbjct: 521 AGHRHSLLLSQEGALYSCGAGSGGCLGHGDTQSQMHPVRIT 561



 Score = 55.8 bits (133), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 43/147 (29%), Positives = 69/147 (46%), Gaps = 12/147 (8%)

Query: 61  GLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALES-----RATWNDPKRVEG 115
           G+P  +   SAGH HSL ++  GA+++ G  +   LG G  +S     R T  D    +G
Sbjct: 513 GIP--MVGASAGHRHSLLLSQEGALYSCGAGSGGCLGHGDTQSQMHPVRITAFDEPEEDG 570

Query: 116 LDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEK-- 173
            ++  +    A   +S A+   GS++ WGK+  G++GLG    +  +P RV     E   
Sbjct: 571 SERTRILQMSAGVDISMAVSTRGSVYGWGKTDGGRIGLGMARNQVTLPRRVSVYREEDGS 630

Query: 174 ---IVKVSFGWGHALAQTEDGKLFGWG 197
               V V  G+ H++    DG +   G
Sbjct: 631 PVLAVDVECGYVHSIVVGLDGTIHMCG 657



 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 67/252 (26%), Positives = 93/252 (36%), Gaps = 75/252 (29%)

Query: 120 NVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGE--KIVKV 177
             C A  SGV +           WG  +RGQLG GK   E + P R+    G   +IV+V
Sbjct: 226 QFCGAGGSGVAA-----------WGVGRRGQLGHGKRRDERL-PRRLRGGIGYAVRIVQV 273

Query: 178 SFGWG-----HALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISS 232
           S G G     H+L  T  G++  +G    G+ G LG                        
Sbjct: 274 SAGGGLVRVAHSLLLTSTGRVLSFG---TGQYGALG------------------------ 306

Query: 233 STIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIAC---GFDHSLVLGRNGVLLSCG 289
                       G    K +P +  P  VEG+  V + C   G  HS V+  +G + + G
Sbjct: 307 -----------HGYSAAKQLPDVMRPQYVEGLAHVRVCCVAAGELHSAVVTSDGDVYTWG 355

Query: 290 SNVYGQLGREKQDMGMFPVDINFHPV------SISSGLGHSLAICEVRSSNVTGGARGIV 343
               GQLG   +   + P  +    +      SIS G  H+LA+ E            + 
Sbjct: 356 DGFCGQLGHADKRPQLAPRQVTAGGLEDEVVASISCGSRHTLAVTEDGE---------VF 406

Query: 344 SWGWNRSSQLGR 355
           SWG      LGR
Sbjct: 407 SWGLGHFGVLGR 418


>gi|383319169|ref|YP_005380010.1| chromosome condensation regulator RCC1 [Methanocella conradii
           HZ254]
 gi|379320539|gb|AFC99491.1| regulator of chromosome condensation RCC1 [Methanocella conradii
           HZ254]
          Length = 438

 Score = 91.3 bits (225), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 79/259 (30%), Positives = 115/259 (44%), Gaps = 52/259 (20%)

Query: 52  DAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPK 111
           D Y P RVP    +VTSV +      A+ ++G VW WG N   QLG G        N P 
Sbjct: 80  DQYVPKRVP--IYNVTSVDSCFASVAALKDDGTVWTWGWNEYGQLGDGTTMDH---NTPG 134

Query: 112 RVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAG 171
            V GL  V   A   S ++  A+G+DG++W WGK+  GQLG G ++ +++ P RV  L  
Sbjct: 135 MVGGLGNVRAVAVGISHML--ALGNDGTVWAWGKNNCGQLGDGTNV-DSMTPVRVSGL-- 189

Query: 172 EKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEIS 231
            +IV +S G+ H LA  + G ++ WG +  G++G+                       IS
Sbjct: 190 PRIVAISAGYNHNLAIDDAGNVWTWGLNDCGQLGD--------------------GTNIS 229

Query: 232 SSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSN 291
           S   +K + L +                      V  +A G   SL L  +G + + GSN
Sbjct: 230 SPNPKKVKGLAN----------------------VTAVAGGSSFSLALKDDGTIWAWGSN 267

Query: 292 VYGQLGREKQDMGMFPVDI 310
           V G+LG         PV +
Sbjct: 268 VQGELGVGTTKDCPLPVKV 286



 Score = 85.1 bits (209), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 92/282 (32%), Positives = 138/282 (48%), Gaps = 33/282 (11%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAW 88
           V ++G    G LG  T++     D   P  V GL  +V +V+ G  H LA+ N+G VWAW
Sbjct: 111 VWTWGWNEYGQLGDGTTM-----DHNTPGMVGGL-GNVRAVAVGISHMLALGNDGTVWAW 164

Query: 89  GRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSS-AIGDDGSLWVWGKSK 147
           G+NN  QLG G      T   P RV GL ++    A ++G   + AI D G++W WG + 
Sbjct: 165 GKNNCGQLGDGTNVDSMT---PVRVSGLPRI---VAISAGYNHNLAIDDAGNVWTWGLND 218

Query: 148 RGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNL 207
            GQLG G +I+    P +V+ LA   +  V+ G   +LA  +DG ++ WG +  G +G +
Sbjct: 219 CGQLGDGTNISSP-NPKKVKGLA--NVTAVAGGSSFSLALKDDGTIWAWGSNVQGELG-V 274

Query: 208 GKALESSPLD------SNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMP---IIWEP 258
           G   +  PL       +N+ R + +  E S++        V    E+ KY+        P
Sbjct: 275 GTT-KDCPLPVKVQGLTNVIRIA-AGGETSAAITNDGSLWVWGHNEQGKYISGGEDASSP 332

Query: 259 FLVEG---VEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLG 297
               G   V++VDI  G  + + L  +G L   G N +GQLG
Sbjct: 333 RRASGLSNVKLVDI--GTINIIALENDGSLWVVGDNQFGQLG 372



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 61/228 (26%), Positives = 95/228 (41%), Gaps = 59/228 (25%)

Query: 130 VSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTE 189
           +S A+ D+G++W WG S  G LG  + + +  VP RV       +  V   +    A  +
Sbjct: 52  LSVALLDNGTVWTWGHSWHGGLGY-ESVQDQYVPKRVPIY---NVTSVDSCFASVAALKD 107

Query: 190 DGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKE 249
           DG ++ WG++  G++G      + + +D N                              
Sbjct: 108 DGTVWTWGWNEYGQLG------DGTTMDHN------------------------------ 131

Query: 250 KYMPIIWEPFLVEGV-EVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPV 308
                   P +V G+  V  +A G  H L LG +G + + G N  GQLG       M PV
Sbjct: 132 -------TPGMVGGLGNVRAVAVGISHMLALGNDGTVWAWGKNNCGQLGDGTNVDSMTPV 184

Query: 309 DINFHP--VSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLG 354
            ++  P  V+IS+G  H+LAI +         A  + +WG N   QLG
Sbjct: 185 RVSGLPRIVAISAGYNHNLAIDD---------AGNVWTWGLNDCGQLG 223



 Score = 62.0 bits (149), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 45/136 (33%), Positives = 75/136 (55%), Gaps = 13/136 (9%)

Query: 31  SFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGR 90
           ++G   QG LG+ T+      D   P +V GL ++V  ++AG   S A+TN+G++W WG 
Sbjct: 263 AWGSNVQGELGVGTTK-----DCPLPVKVQGL-TNVIRIAAGGETSAAITNDGSLWVWGH 316

Query: 91  NNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQ 150
           N + +   G  ++ +    P+R  GL  V +       ++  A+ +DGSLWV G ++ GQ
Sbjct: 317 NEQGKYISGGEDASS----PRRASGLSNVKLVDIGTINII--ALENDGSLWVVGDNQFGQ 370

Query: 151 LGLGKDITEAIVPSRV 166
           LG G +  +  +P+RV
Sbjct: 371 LGTG-NTYDRNMPARV 385


>gi|296445916|ref|ZP_06887867.1| regulator of chromosome condensation RCC1 [Methylosinus
           trichosporium OB3b]
 gi|296256584|gb|EFH03660.1| regulator of chromosome condensation RCC1 [Methylosinus
           trichosporium OB3b]
          Length = 492

 Score = 91.3 bits (225), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 104/331 (31%), Positives = 146/331 (44%), Gaps = 41/331 (12%)

Query: 55  EPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVE 114
            P  V GLPSD+ ++S G  HS A+T+ GAV  WG N   QLG G   +R+    P  V 
Sbjct: 133 SPVSVSGLPSDIVAISMGDGHSCALTSAGAVECWGWNQVGQLGDGTYPNRSA---PGVVT 189

Query: 115 GLDQVNVCAAFASG-VVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEK 173
            L    V  A ASG V S A+   G++  WG +  GQLG G   T    P  V  L    
Sbjct: 190 RLSSGVV--AIASGDVHSCALTSVGAVKCWGSNVAGQLGAGTP-TYHRTPIGVTGLR-SG 245

Query: 174 IVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEIS-- 231
           +V ++ G  H+ A    G +  WG ++ G++G+   A  ++P+   +   S     I+  
Sbjct: 246 VVAIAGGNQHSCALATAGAVKCWGSNSHGQLGDGTTANRATPVA--VPSLSSGVVAITAG 303

Query: 232 ---SSTIEKAQKLV-----SEGMEKEKYMPIIWEPFLVEGVE--VVDIACGFDHSLVLGR 281
              S  + KA  +V     S G   +        P +V G+   VV IA G +H+  L  
Sbjct: 304 WGHSCALTKAGAVVCWGDNSNGQIGDGTTTTRHTPVVVSGLTSGVVAIATGSNHNCALKG 363

Query: 282 NGVLLSCGSNVYGQLGREKQDMGMFPVDINFHP---VSISSGLGHSLAICEVRSSNVTGG 338
           NG +L  GSN  G LG         PV +  H    V+I+ G  H+   C   SS V   
Sbjct: 364 NGAVLCWGSNQDGVLGDRTMTNRTTPVAVPGHTRGVVAIALGSDHT---CVTISSGV--- 417

Query: 339 ARGIVSWGWNRSSQLG-------RMGPDNVP 362
              +  WG +   QLG       R+ P  +P
Sbjct: 418 ---VRCWGSDGLGQLGDGTFQRRRLAPKPIP 445



 Score = 71.2 bits (173), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 86/318 (27%), Positives = 133/318 (41%), Gaps = 36/318 (11%)

Query: 68  SVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFAS 127
           ++S G  HS A+   G V  WGRN+  QLG G +  R++   P  V GL    V  +   
Sbjct: 95  TLSMGGQHSCALPAAGGVSCWGRNDYGQLGDGTMVRRSS---PVSVSGLPSDIVAISMGD 151

Query: 128 GVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQ 187
           G  S A+   G++  WG ++ GQLG G     +  P  V  L+   +V ++ G  H+ A 
Sbjct: 152 G-HSCALTSAGAVECWGWNQVGQLGDGTYPNRS-APGVVTRLS-SGVVAIASGDVHSCAL 208

Query: 188 TEDGKLFGWGYSADGRIGNLGKALESSP-----LDSNIDRSSESDQEISSSTIEKAQKL- 241
           T  G +  WG +  G++G        +P     L S +   +  +Q   +     A K  
Sbjct: 209 TSVGAVKCWGSNVAGQLGAGTPTYHRTPIGVTGLRSGVVAIAGGNQHSCALATAGAVKCW 268

Query: 242 -------VSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYG 294
                  + +G    +  P+   P L  G  VV I  G+ HS  L + G ++  G N  G
Sbjct: 269 GSNSHGQLGDGTTANRATPVA-VPSLSSG--VVAITAGWGHSCALTKAGAVVCWGDNSNG 325

Query: 295 QLGREKQDMGMFPV---DINFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSS 351
           Q+G         PV    +    V+I++G  H+ A+          G   ++ WG N+  
Sbjct: 326 QIGDGTTTTRHTPVVVSGLTSGVVAIATGSNHNCAL---------KGNGAVLCWGSNQDG 376

Query: 352 QLG--RMGPDNVPLVVEG 367
            LG   M     P+ V G
Sbjct: 377 VLGDRTMTNRTTPVAVPG 394



 Score = 64.3 bits (155), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 57/183 (31%), Positives = 83/183 (45%), Gaps = 11/183 (6%)

Query: 24  ASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNG 83
           A+  AV  +G  S G LG      G   +   P  VP L S V +++AG  HS A+T  G
Sbjct: 260 ATAGAVKCWGSNSHGQLG-----DGTTANRATPVAVPSLSSGVVAITAGWGHSCALTKAG 314

Query: 84  AVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVW 143
           AV  WG N+  Q+G G   +R T   P  V GL    V  A  S   + A+  +G++  W
Sbjct: 315 AVVCWGDNSNGQIGDGTTTTRHT---PVVVSGLTSGVVAIATGSN-HNCALKGNGAVLCW 370

Query: 144 GKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGR 203
           G ++ G LG  + +T    P  V       +V ++ G  H       G +  WG    G+
Sbjct: 371 GSNQDGVLG-DRTMTNRTTPVAVPGHT-RGVVAIALGSDHTCVTISSGVVRCWGSDGLGQ 428

Query: 204 IGN 206
           +G+
Sbjct: 429 LGD 431


>gi|320162832|gb|EFW39731.1| conserved hypothetical protein [Capsaspora owczarzaki ATCC 30864]
          Length = 591

 Score = 91.3 bits (225), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 73/248 (29%), Positives = 120/248 (48%), Gaps = 47/248 (18%)

Query: 52  DAYEPTRVPGLPS-DVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDP 110
           D + P R+ GL   D+T ++    HS+AV +NG  + WGR  +  LG    +  +    P
Sbjct: 231 DRFTPLRLAGLRGFDITHIACNENHSVAVADNGEAYVWGRGIDGSLGVEGDKHVS----P 286

Query: 111 KRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIV-PSRVEAL 169
            ++  LD   V  A      +  + + G ++  G ++ GQLG+G +  EA+  P+ V  L
Sbjct: 287 TQIHALDGKRVVHAACGAAFTLFVIESGEVYACGNNEHGQLGIGSN--EAMSEPTLVTNL 344

Query: 170 AGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQE 229
             E+IV+++ G  HA+A +E G+L+ WG  + G++G +G+ LE        DR S     
Sbjct: 345 P-ERIVRIACGNSHAVALSETGRLYAWGAHSSGQLG-VGEPLE--------DRLS----- 389

Query: 230 ISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCG 289
                                  P+  E  +V   +V D ACG +H+++L  +G+L + G
Sbjct: 390 -----------------------PVRVESNVVRD-DVADFACGGNHTIILSNSGLLYAFG 425

Query: 290 SNVYGQLG 297
           S   GQLG
Sbjct: 426 SGAQGQLG 433



 Score = 74.3 bits (181), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 63/214 (29%), Positives = 99/214 (46%), Gaps = 21/214 (9%)

Query: 5   KSVVHNHVNVLTSRIFMRSASGTAVVSF----------GDGSQGALGLPTSLTGVGGDAY 54
           K V    ++ L  +  + +A G A   F          G+   G LG+     G      
Sbjct: 282 KHVSPTQIHALDGKRVVHAACGAAFTLFVIESGEVYACGNNEHGQLGI-----GSNEAMS 336

Query: 55  EPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRG-ALESRATWNDPKRV 113
           EPT V  LP  +  ++ G+ H++A++  G ++AWG ++  QLG G  LE R +   P RV
Sbjct: 337 EPTLVTNLPERIVRIACGNSHAVALSETGRLYAWGAHSSGQLGVGEPLEDRLS---PVRV 393

Query: 114 EGLDQVNVCAAFASGVVSSAI-GDDGSLWVWGKSKRGQLGLGKDITE-AIVPSRVEALAG 171
           E     +  A FA G   + I  + G L+ +G   +GQLGLG   T+    P+ +    G
Sbjct: 394 ESNVVRDDVADFACGGNHTIILSNSGLLYAFGSGAQGQLGLGPLATKNQATPAALPNPEG 453

Query: 172 EKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIG 205
            K   +S G   + A ++ GK++ WG  A   +G
Sbjct: 454 RKYTAISCGQDISAAVSDRGKIYTWGSGASNALG 487



 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 67/234 (28%), Positives = 109/234 (46%), Gaps = 26/234 (11%)

Query: 136 DDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFG 195
           D   ++ WG+  RG LG G++  EA  P  VEAL G  I  +  G GH +A    G+++ 
Sbjct: 157 DASDVYTWGEGTRGMLGHGEEDPEA-SPRVVEALLGHDIKMLCLGSGHTMALAVSGEVYS 215

Query: 196 WGYSADGRIGNLGKALESSPLDSNIDRSSE-----SDQEISSSTIEKAQKLV-------S 243
           WG    GR+G   +    +PL     R  +      ++  S +  +  +  V       S
Sbjct: 216 WGLGLGGRLGQGRERDRFTPLRLAGLRGFDITHIACNENHSVAVADNGEAYVWGRGIDGS 275

Query: 244 EGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDM 303
            G+E +K++    +   ++G  VV  ACG   +L +  +G + +CG+N +GQLG    + 
Sbjct: 276 LGVEGDKHVSPT-QIHALDGKRVVHAACGAAFTLFVIESGEVYACGNNEHGQLGIGSNEA 334

Query: 304 GMFPVDINFHP---VSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLG 354
              P  +   P   V I+ G  H++A+ E      TG    + +WG + S QLG
Sbjct: 335 MSEPTLVTNLPERIVRIACGNSHAVALSE------TG---RLYAWGAHSSGQLG 379


>gi|410898904|ref|XP_003962937.1| PREDICTED: protein RCC2 homolog [Takifugu rubripes]
          Length = 494

 Score = 91.3 bits (225), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 86/295 (29%), Positives = 132/295 (44%), Gaps = 39/295 (13%)

Query: 75  HSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAI 134
           HSL +T  G +W+WGRN + QLG G  +       PK +EGL    V AA      + A+
Sbjct: 133 HSLLITTEGKLWSWGRNEKGQLGHGDTKRLEA---PKLIEGLADHLVVAAACGRNHTLAL 189

Query: 135 GDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLF 194
            D+GS++ +G++K GQLG        + P+ + +  G+ +VKV+ G   ++     G L+
Sbjct: 190 TDNGSVYSFGENKLGQLGQCSQTYAVLSPALI-SYDGQPLVKVACGAEFSMVVDCKGNLY 248

Query: 195 GWGYSADGRIGNL--GKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYM 252
            +G    G++G+   GK +  +       +  E D EI    I +   +  E  +  + M
Sbjct: 249 SFGCPEYGQLGHNSDGKFIARA-------QRIEFDCEI----IPRRIAIFIEKSKDGQVM 297

Query: 253 PIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINF 312
           P       V  V V D+ACG +H+LVL     + S G   YG+LG  +Q   M P  I  
Sbjct: 298 P-------VPNVVVRDVACGANHTLVLDSQKRVFSWGFGGYGRLGHAEQKDEMVPRLIKL 350

Query: 313 HPV------SISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPDNV 361
                     I +G   S A+ E  S         +  WG   +S+   M P  V
Sbjct: 351 FDFPGRGASQIYTGYQCSFAVTENGS---------LSFWGVTNTSRESTMYPKAV 396



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 54/186 (29%), Positives = 82/186 (44%), Gaps = 31/186 (16%)

Query: 56  PTRVPGLPSD-VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVE 114
           P  + GL    V + + G  H+LA+T+NG+V+++G N   QLG+ +             +
Sbjct: 165 PKLIEGLADHLVVAAACGRNHTLALTDNGSVYSFGENKLGQLGQCSQTYAVLSPALISYD 224

Query: 115 GLDQVNV-CAAFASGVVSSAIGDDGSLWVWGKSKRGQLGL---GKDITEA--------IV 162
           G   V V C A  S VV       G+L+ +G  + GQLG    GK I  A        I+
Sbjct: 225 GQPLVKVACGAEFSMVVDCK----GNLYSFGCPEYGQLGHNSDGKFIARAQRIEFDCEII 280

Query: 163 PSRVEALAGEK-------------IVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGK 209
           P R+ A+  EK             +  V+ G  H L      ++F WG+   GR+G+  +
Sbjct: 281 PRRI-AIFIEKSKDGQVMPVPNVVVRDVACGANHTLVLDSQKRVFSWGFGGYGRLGHAEQ 339

Query: 210 ALESSP 215
             E  P
Sbjct: 340 KDEMVP 345



 Score = 40.4 bits (93), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 50/178 (28%), Positives = 74/178 (41%), Gaps = 22/178 (12%)

Query: 10  NHVNVLTSRIFMRSASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSV 69
           NH  VL S+          V S+G G  G LG       +     +    PG     + +
Sbjct: 312 NHTLVLDSQ--------KRVFSWGFGGYGRLGHAEQKDEMVPRLIKLFDFPG--RGASQI 361

Query: 70  SAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGV 129
             G+  S AVT NG++  WG  N          SR +   PK V+ L    +  + A G 
Sbjct: 362 YTGYQCSFAVTENGSLSFWGVTN---------TSRESTMYPKAVQDLGGWKI-RSLACGK 411

Query: 130 VSSAIGDDGSLWVWGKSKR-GQLGLGKDITEAIVPSR-VEALAGEKIVKVSFGWGHAL 185
            S  +  D S   WG S   G+LG G +  ++   ++ V+ L G  + KV  G+ H+L
Sbjct: 412 SSIILAADESTISWGPSPTCGELGYGDNKPKSSTTAQEVKTLDGVYVEKVMMGYSHSL 469


>gi|326673186|ref|XP_685685.5| PREDICTED: probable E3 ubiquitin-protein ligase HERC4 [Danio rerio]
          Length = 1053

 Score = 91.3 bits (225), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 75/279 (26%), Positives = 125/279 (44%), Gaps = 49/279 (17%)

Query: 55  EPTRVPGLPS-DVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRV 113
           +P +V  L + ++ +VS G  H+LA+ + G V+AWG  ++ QLG   +E       P+ V
Sbjct: 74  KPEQVVSLDAQNIVAVSCGEAHTLALNDKGQVFAWGLGSDGQLGLSIVED--CLRVPRTV 131

Query: 114 EGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEK 173
           + L +V++         S A+   G ++ WG++K GQLGLG+       P  +++L G  
Sbjct: 132 KSLSEVHITQVACGYWHSLALARGGEIFSWGQNKYGQLGLGQQGACVCSPQVIQSLQGIP 191

Query: 174 IVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSS 233
             ++S G  H+   T  G +FGWG +  G++G          L  N DR           
Sbjct: 192 FGQISAGGAHSFGLTLSGAIFGWGRNKFGQLG----------LGDNDDRR---------- 231

Query: 234 TIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVY 293
                              P++ +   +   +VV I CG DH+  L + G + + G+  Y
Sbjct: 232 ------------------FPVLLKT--LRSQQVVYICCGEDHTAALTKEGGVFTFGAGGY 271

Query: 294 GQLGREKQDMGMFPVDINFHPV-----SISSGLGHSLAI 327
           GQLG    +  + P  + F  +      I+ G  H+LA 
Sbjct: 272 GQLGHNSTNHEVNPRKV-FELMGSVVSQIACGRQHTLAF 309



 Score = 75.5 bits (184), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 83/307 (27%), Positives = 126/307 (41%), Gaps = 58/307 (18%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAY-EPTRVPGLP-SDVTSVSAGHYHSLAVTNNGAVW 86
           ++ +G+ S G LGL     G+  +   EP R        V  V  G  H++ +  +G V+
Sbjct: 1   MLCWGNASFGQLGL----GGIDEEVLLEPRRCEFFEGKRVRDVGCGRRHTVFLLEDGTVY 56

Query: 87  AWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKS 146
             G N+  QLG      +     P++V  LD  N+ A       + A+ D G ++ WG  
Sbjct: 57  TCGCNDLGQLGHEKARKK-----PEQVVSLDAQNIVAVSCGEAHTLALNDKGQVFAWGLG 111

Query: 147 KRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGN 206
             GQLGL        VP  V++L+   I +V+ G+ H+LA    G++F WG +  G++G 
Sbjct: 112 SDGQLGLSIVEDCLRVPRTVKSLSEVHITQVACGYWHSLALARGGEIFSWGQNKYGQLG- 170

Query: 207 LGK--ALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGV 264
           LG+  A   SP            Q I S                            ++G+
Sbjct: 171 LGQQGACVCSP------------QVIQS----------------------------LQGI 190

Query: 265 EVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINF----HPVSISSG 320
               I+ G  HS  L  +G +   G N +GQLG    D   FPV +        V I  G
Sbjct: 191 PFGQISAGGAHSFGLTLSGAIFGWGRNKFGQLGLGDNDDRRFPVLLKTLRSQQVVYICCG 250

Query: 321 LGHSLAI 327
             H+ A+
Sbjct: 251 EDHTAAL 257



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 77/295 (26%), Positives = 123/295 (41%), Gaps = 59/295 (20%)

Query: 85  VWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWG 144
           +  WG  +  QLG G ++      +P+R E  +   V         +  + +DG+++  G
Sbjct: 1   MLCWGNASFGQLGLGGIDEEVLL-EPRRCEFFEGKRVRDVGCGRRHTVFLLEDGTVYTCG 59

Query: 145 KSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRI 204
            +  GQLG  K   +   P +V +L  + IV VS G  H LA  + G++F WG  +DG+ 
Sbjct: 60  CNDLGQLGHEKARKK---PEQVVSLDAQNIVAVSCGEAHTLALNDKGQVFAWGLGSDGQ- 115

Query: 205 GNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGV 264
             LG ++    L   + R+ +S  E                                  V
Sbjct: 116 --LGLSIVEDCL--RVPRTVKSLSE----------------------------------V 137

Query: 265 EVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDI--NFHPV---SISS 319
            +  +ACG+ HSL L R G + S G N YGQLG  +Q   +    +  +   +    IS+
Sbjct: 138 HITQVACGYWHSLALARGGEIFSWGQNKYGQLGLGQQGACVCSPQVIQSLQGIPFGQISA 197

Query: 320 GLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPDN--VPLVVEGLEGES 372
           G  HS  +          GA  I  WG N+  QLG    D+   P++++ L  + 
Sbjct: 198 GGAHSFGL-------TLSGA--IFGWGRNKFGQLGLGDNDDRRFPVLLKTLRSQQ 243



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 54/196 (27%), Positives = 84/196 (42%), Gaps = 14/196 (7%)

Query: 24  ASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVP---GLPSDVTSVSAGHYHSLAVT 80
           A G  + S+G    G LGL       G     P  +    G+P     +SAG  HS  +T
Sbjct: 153 ARGGEIFSWGQNKYGQLGLGQQ----GACVCSPQVIQSLQGIP--FGQISAGGAHSFGLT 206

Query: 81  NNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSL 140
            +GA++ WGRN   QLG G  + R      K +     V +C        ++A+  +G +
Sbjct: 207 LSGAIFGWGRNKFGQLGLGDNDDRRFPVLLKTLRSQQVVYICCGEDH---TAALTKEGGV 263

Query: 141 WVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQT-EDGKLFGWGYS 199
           + +G    GQLG        + P +V  L G  + +++ G  H LA     GK+  +G  
Sbjct: 264 FTFGAGGYGQLG-HNSTNHEVNPRKVFELMGSVVSQIACGRQHTLAFIPSSGKIDSFGLG 322

Query: 200 ADGRIGNLGKALESSP 215
            +G++G        SP
Sbjct: 323 GNGQLGTRSTCNRISP 338


>gi|281205822|gb|EFA80011.1| regulator of chromosome condensation domain-containing protein
            [Polysphondylium pallidum PN500]
          Length = 1800

 Score = 91.3 bits (225), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 92/367 (25%), Positives = 158/367 (43%), Gaps = 54/367 (14%)

Query: 24   ASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSD-VTSVSAGHYHSLAVTNN 82
            +S   + ++G+ SQG LG   +   VG     P RV    S  +  +S G  HS+AV  +
Sbjct: 1048 SSDGELFTWGNNSQGQLGHGLN---VGKYQSTPRRVETFKSSPIIMISCGGEHSVAVDQS 1104

Query: 83   GAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAI-GDDGSLW 141
              +++WG +   QLG G L  +   N PK++E         A A+G   + +    G L+
Sbjct: 1105 FQIYSWGSSRYGQLGHGVLTPQ---NLPKKIEDFTGGQKVLAIATGYAHTMVLKKSGDLF 1161

Query: 142  VWGKSKRGQLGLGKDITEAIVPSRVE-----ALAGEKIVKVSFGWGHALAQTEDGKLFGW 196
             +G +  GQLGLG +     VP R+E      + GE+I  ++ G  H++   ++G ++ W
Sbjct: 1162 TFGWNDSGQLGLG-NFKNRAVPMRIETSEIVGIHGERITAIAAGHSHSIMCLDNGDIYSW 1220

Query: 197  GYSADGRI--GNLGKALESSPLDS-----NIDRSSESDQEISSSTI-------EKAQKLV 242
            G ++ G++  GN+ K+L    +D       I  S      ++ S +       +     +
Sbjct: 1221 GANSKGQLGHGNIEKSLRPKQIDELKGKPIIKISCGHFHTVAISELNSVYCWGQGEHMCL 1280

Query: 243  SEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVL------GRNGVLLSCGSNVYGQL 296
              G  K +  P + E F+ + +E   + CG  H+  +         G +  CG   +G+L
Sbjct: 1281 GNGSNKNELSPKMIEFFINKKIE--KVVCGLYHTATVTAAENGSDRGNVYICGGGEHGKL 1338

Query: 297  GR---------EKQDMGMFPVDINFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGW 347
            G          +K    + P   + + V  SSG   S  I          GA  + +WG+
Sbjct: 1339 GTGGDLKTPFFDKPHPAVIPSLNSMNIVGFSSGSEFSAII-------TNNGA--LYTWGY 1389

Query: 348  NRSSQLG 354
                Q+G
Sbjct: 1390 GNFGQIG 1396



 Score = 89.4 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 72/270 (26%), Positives = 122/270 (45%), Gaps = 42/270 (15%)

Query: 68   SVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFAS 127
            SV+ G  H   ++++G ++ WG N++ QLG G L      + P+RVE      +      
Sbjct: 1036 SVACGWEHIAVISSDGELFTWGNNSQGQLGHG-LNVGKYQSTPRRVETFKSSPIIMISCG 1094

Query: 128  GVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEAL-AGEKIVKVSFGWGHALA 186
            G  S A+     ++ WG S+ GQLG G  +T   +P ++E    G+K++ ++ G+ H + 
Sbjct: 1095 GEHSVAVDQSFQIYSWGSSRYGQLGHGV-LTPQNLPKKIEDFTGGQKVLAIATGYAHTMV 1153

Query: 187  QTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGM 246
              + G LF +G++  G++G LG   ++  +   I+ S                       
Sbjct: 1154 LKKSGDLFTFGWNDSGQLG-LGN-FKNRAVPMRIETS----------------------- 1188

Query: 247  EKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMF 306
                      E   + G  +  IA G  HS++   NG + S G+N  GQLG    +  + 
Sbjct: 1189 ----------EIVGIHGERITAIAAGHSHSIMCLDNGDIYSWGANSKGQLGHGNIEKSLR 1238

Query: 307  PVDIN---FHP-VSISSGLGHSLAICEVRS 332
            P  I+     P + IS G  H++AI E+ S
Sbjct: 1239 PKQIDELKGKPIIKISCGHFHTVAISELNS 1268



 Score = 73.2 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 52/190 (27%), Positives = 95/190 (50%), Gaps = 21/190 (11%)

Query: 29   VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSD-VTSVSAGHYHSLAVTNNGAVWA 87
            + S+G  S+G LG      G    +  P ++  L    +  +S GH+H++A++   +V+ 
Sbjct: 1217 IYSWGANSKGQLG-----HGNIEKSLRPKQIDELKGKPIIKISCGHFHTVAISELNSVYC 1271

Query: 88   WGRNNEVQLGRGALESRATWNDPKRVE-----GLDQVNVCAAFASGVVSSAI--GDDGSL 140
            WG+   + LG G+ ++  +   PK +E      +++V VC  + +  V++A    D G++
Sbjct: 1272 WGQGEHMCLGNGSNKNELS---PKMIEFFINKKIEKV-VCGLYHTATVTAAENGSDRGNV 1327

Query: 141  WVWGKSKRGQLGLGKDITEAIV----PSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGW 196
            ++ G  + G+LG G D+         P+ + +L    IV  S G   +   T +G L+ W
Sbjct: 1328 YICGGGEHGKLGTGGDLKTPFFDKPHPAVIPSLNSMNIVGFSSGSEFSAIITNNGALYTW 1387

Query: 197  GYSADGRIGN 206
            GY   G+IGN
Sbjct: 1388 GYGNFGQIGN 1397



 Score = 62.0 bits (149), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 62/207 (29%), Positives = 95/207 (45%), Gaps = 33/207 (15%)

Query: 172  EKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIG---NLGK---------ALESSP---L 216
            +K V V+ GW H    + DG+LF WG ++ G++G   N+GK           +SSP   +
Sbjct: 1032 KKAVSVACGWEHIAVISSDGELFTWGNNSQGQLGHGLNVGKYQSTPRRVETFKSSPIIMI 1091

Query: 217  DSNIDRSSESDQ--EISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFD 274
                + S   DQ  +I S    +  +L   G+   + +P   E F   G +V+ IA G+ 
Sbjct: 1092 SCGGEHSVAVDQSFQIYSWGSSRYGQL-GHGVLTPQNLPKKIEDF-TGGQKVLAIATGYA 1149

Query: 275  HSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDIN------FHPVSISS-GLGHSLAI 327
            H++VL ++G L + G N  GQLG         P+ I        H   I++   GHS +I
Sbjct: 1150 HTMVLKKSGDLFTFGWNDSGQLGLGNFKNRAVPMRIETSEIVGIHGERITAIAAGHSHSI 1209

Query: 328  CEVRSSNVTGGARGIVSWGWNRSSQLG 354
              + + +       I SWG N   QLG
Sbjct: 1210 MCLDNGD-------IYSWGANSKGQLG 1229



 Score = 47.4 bits (111), Expect = 0.010,   Method: Composition-based stats.
 Identities = 36/127 (28%), Positives = 56/127 (44%), Gaps = 29/127 (22%)

Query: 258  PFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLG------------REKQDMGM 305
            P +    + V +ACG++H  V+  +G L + G+N  GQLG            R  +    
Sbjct: 1026 PLVKNEKKAVSVACGWEHIAVISSDGELFTWGNNSQGQLGHGLNVGKYQSTPRRVETFKS 1085

Query: 306  FPVDINFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGR--MGPDNVPL 363
             P+      + IS G  HS+A+ +         +  I SWG +R  QLG   + P N+P 
Sbjct: 1086 SPI------IMISCGGEHSVAVDQ---------SFQIYSWGSSRYGQLGHGVLTPQNLPK 1130

Query: 364  VVEGLEG 370
             +E   G
Sbjct: 1131 KIEDFTG 1137



 Score = 45.4 bits (106), Expect = 0.039,   Method: Composition-based stats.
 Identities = 26/71 (36%), Positives = 34/71 (47%), Gaps = 1/71 (1%)

Query: 33   GDGSQGALGLPTSLTGVGGDAYEPTRVPGLPS-DVTSVSAGHYHSLAVTNNGAVWAWGRN 91
            G G  G LG    L     D   P  +P L S ++   S+G   S  +TNNGA++ WG  
Sbjct: 1331 GGGEHGKLGTGGDLKTPFFDKPHPAVIPSLNSMNIVGFSSGSEFSAIITNNGALYTWGYG 1390

Query: 92   NEVQLGRGALE 102
            N  Q+G G  E
Sbjct: 1391 NFGQIGNGKTE 1401



 Score = 39.3 bits (90), Expect = 3.5,   Method: Composition-based stats.
 Identities = 31/100 (31%), Positives = 49/100 (49%), Gaps = 12/100 (12%)

Query: 66   VTSVSAGHYHSLAVT------NNGAVWAWGRNNEVQLGRGALESRATWND---PKRVEGL 116
            +  V  G YH+  VT      + G V+  G     +LG G  + +  + D   P  +  L
Sbjct: 1302 IEKVVCGLYHTATVTAAENGSDRGNVYICGGGEHGKLGTGG-DLKTPFFDKPHPAVIPSL 1360

Query: 117  DQVNVCAAFASGVVSSAI-GDDGSLWVWGKSKRGQLGLGK 155
            + +N+   F+SG   SAI  ++G+L+ WG    GQ+G GK
Sbjct: 1361 NSMNI-VGFSSGSEFSAIITNNGALYTWGYGNFGQIGNGK 1399


>gi|159488564|ref|XP_001702277.1| hypothetical protein CHLREDRAFT_122886 [Chlamydomonas reinhardtii]
 gi|158271254|gb|EDO97078.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 376

 Score = 91.3 bits (225), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 98/348 (28%), Positives = 147/348 (42%), Gaps = 95/348 (27%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLP-SDVTSVSAGHYHSLAV-TNNGAVW 86
           V S+G G  G LG      G       PT +  L  + V +V  G  +++AV ++ G ++
Sbjct: 31  VASWGRGEDGQLG-----HGQADQCTSPTCIAALTDAGVDAVVCGAEYTVAVASSRGQIY 85

Query: 87  AWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASG--VVSSAIGD-------- 136
           +WG  +  +LG G          P+ +          AF SG  V   A GD        
Sbjct: 86  SWGWGDFGRLGHGECGDVFV---PRPI----------AFFSGRPVARVACGDTHTLVVTQ 132

Query: 137 -DGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFG 195
            DG+L+ +G+++ GQLGLG    + + P  V AL GE++  V+ G  H+LA TE G +F 
Sbjct: 133 GDGALYTFGRNQNGQLGLGH-TNDCLSPQLVTALQGERVSSVACGSEHSLAATEAGTVFS 191

Query: 196 WGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPII 255
           WG+   GR GNLG                                   +G  +++Y P  
Sbjct: 192 WGW---GRYGNLG-----------------------------------DGDSQDRYTPT- 212

Query: 256 WEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFHPV 315
                ++GV V  + CG+ HS V+   G + + G + YGQLG            ++    
Sbjct: 213 -RVVGLDGVTVTSVVCGWRHSAVVTDEGRVFTFGWSKYGQLGHGDH--------VDHTRP 263

Query: 316 SISSGLGHSLAICEVRSSNVTGGAR---------GIVSWGWNRSSQLG 354
            + +GL H       R S V GG R          + +WGWN+  QLG
Sbjct: 264 CLVAGLQH------CRVSTVAGGWRHTMAADSEGNLYAWGWNKFGQLG 305



 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 82/278 (29%), Positives = 124/278 (44%), Gaps = 39/278 (14%)

Query: 28  AVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSD-VTSVSAGHYHSLAVTNNGAVW 86
           A+ +FG    G LGL     G   D   P  V  L  + V+SV+ G  HSLA T  G V+
Sbjct: 136 ALYTFGRNQNGQLGL-----GHTNDCLSPQLVTALQGERVSSVACGSEHSLAATEAGTVF 190

Query: 87  AWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKS 146
           +WG      LG G  + R T   P RV GLD V V +       S+ + D+G ++ +G S
Sbjct: 191 SWGWGRYGNLGDGDSQDRYT---PTRVVGLDGVTVTSVVCGWRHSAVVTDEGRVFTFGWS 247

Query: 147 KRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGN 206
           K GQLG G D  +   P  V  L   ++  V+ GW H +A   +G L+ WG++  G++G 
Sbjct: 248 KYGQLGHG-DHVDHTRPCLVAGLQHCRVSTVAGGWRHTMAADSEGNLYAWGWNKFGQLG- 305

Query: 207 LGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEV 266
                    L  + DR++ +   ++   +            +                 V
Sbjct: 306 ---------LGDSEDRAAPT--PVAGFGLAGGGVEAGAATPR----------------RV 338

Query: 267 VDIACGFDHSLVLGRNGVLLSCGSNVYGQLGR-EKQDM 303
             +ACG+ H++ +   G + S G  V GQLG   +QD+
Sbjct: 339 ALLACGWRHTVAVTEAGEVYSWGRGVNGQLGHGAEQDL 376


>gi|354505309|ref|XP_003514713.1| PREDICTED: protein RCC2-like [Cricetulus griseus]
          Length = 484

 Score = 91.3 bits (225), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 79/293 (26%), Positives = 127/293 (43%), Gaps = 35/293 (11%)

Query: 75  HSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAI 134
           HSL +T  G +W+WGRN + QLG G  +       P+ +E L    +  A      + A+
Sbjct: 123 HSLLITTEGKLWSWGRNEKGQLGHGDTKRVEA---PRLIEALSHEAIVLAACGRNHTLAL 179

Query: 135 GDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLF 194
            D GS++ +G++K GQLGLG        P+++    G+ I K++ G   ++     G L+
Sbjct: 180 TDTGSVFAFGENKMGQLGLGNQTDAVPSPAQI-MYNGQPITKMACGAEFSMLMDCKGNLY 238

Query: 195 GWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPI 254
            +G    G++G+            N D    +  +      E   + V+  +EK K   I
Sbjct: 239 SFGCPEYGQLGH------------NSDGKFIARAQRIEYDCELVPRRVAIFIEKTKDGQI 286

Query: 255 IWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFH- 313
           +  P +V     + +ACG +H+LVL     + S G   YG+LG  +Q   M P  +    
Sbjct: 287 LPVPNVV----FLHVACGANHTLVLDSQKRVFSWGFGGYGRLGHAEQKDEMVPRLVKLFD 342

Query: 314 -----PVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPDNV 361
                   I +G   S A+ EV          G+  WG   +S+   M P  V
Sbjct: 343 FPGRGATQIYAGYTCSFAVSEV---------GGLFFWGATNTSRESTMYPKAV 386



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 53/186 (28%), Positives = 80/186 (43%), Gaps = 31/186 (16%)

Query: 56  PTRVPGLPSDVTSVSA-GHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVE 114
           P  +  L  +   ++A G  H+LA+T+ G+V+A+G N   QLG G      T   P   +
Sbjct: 155 PRLIEALSHEAIVLAACGRNHTLALTDTGSVFAFGENKMGQLGLG----NQTDAVPSPAQ 210

Query: 115 GLDQVNVCAAFASGVVSSAIGD-DGSLWVWGKSKRGQLGL---GKDITEA--------IV 162
            +         A G   S + D  G+L+ +G  + GQLG    GK I  A        +V
Sbjct: 211 IMYNGQPITKMACGAEFSMLMDCKGNLYSFGCPEYGQLGHNSDGKFIARAQRIEYDCELV 270

Query: 163 PSRVEALAGEK-------------IVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGK 209
           P RV A+  EK              + V+ G  H L      ++F WG+   GR+G+  +
Sbjct: 271 PRRV-AIFIEKTKDGQILPVPNVVFLHVACGANHTLVLDSQKRVFSWGFGGYGRLGHAEQ 329

Query: 210 ALESSP 215
             E  P
Sbjct: 330 KDEMVP 335


>gi|197121464|ref|YP_002133415.1| chromosome condensation regulator RCC1 [Anaeromyxobacter sp. K]
 gi|196171313|gb|ACG72286.1| regulator of chromosome condensation RCC1 [Anaeromyxobacter sp. K]
          Length = 714

 Score = 91.3 bits (225), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 77/275 (28%), Positives = 128/275 (46%), Gaps = 37/275 (13%)

Query: 64  SDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRV-EGLDQVNVC 122
           S    V+ G  H  A+  +G+ WAWG ++  Q G G+    A    P +V  G  +V   
Sbjct: 338 SGFAQVAVGSRHMAAIAADGSRWAWGNDDFGQAGDGSWSRSAV---PAQVGSGFARVAAG 394

Query: 123 AAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWG 182
              + GV +     DG+LW WG +  GQ+G G D  +   P R+    GE   +V+ G+ 
Sbjct: 395 LGHSLGVKA-----DGTLWAWGLNDMGQVGDGTDAPQRGAPVRI----GEAFAQVAAGYQ 445

Query: 183 HALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIE-KAQKL 241
           H+LA   DG L+ WG ++ G++G+   A   +P             +I S  +   A + 
Sbjct: 446 HSLAVAADGTLWSWGSNSSGQLGDPSVASRHTP------------AQIGSGFVRVAAGRW 493

Query: 242 VSEGMEKEKYMPIIW---------EPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNV 292
            S G++ +  +  IW          P  V G   +++A G +H++ L  +G L + G+N 
Sbjct: 494 HSAGVKADGTL-WIWGGDVGGTYDTPTQV-GSGFLEVAAGHEHTVALAEDGTLWTWGNNG 551

Query: 293 YGQLGREKQDMGMFPVDINFHPVSISSGLGHSLAI 327
            GQL     D  + PV +    V +++G  H++A+
Sbjct: 552 LGQLCDGTFDQRIAPVQVGTGFVHVAAGAYHTVAL 586



 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 69/235 (29%), Positives = 105/235 (44%), Gaps = 25/235 (10%)

Query: 75  HSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAI 134
           H++A+  +G +WAWG N+  Q+G G    RAT   P RV          A A    + A+
Sbjct: 53  HTVAIAKDGTLWAWGINDAGQIGDGTRVDRAT---PVRVG----AGFARAAAGTGYTLAV 105

Query: 135 GDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGH--ALAQTEDGK 192
             DG+LW WG +  GQLG G     A   + V+  AG   V  S  W    +LA   DG 
Sbjct: 106 KADGTLWAWGDNASGQLGDGTTTPRA---APVQIGAGFAEVAASRNWLEPVSLAVKTDGT 162

Query: 193 LFGWGYSADGRIGNLGKALESSPLD--SNIDRSSESDQEISSSTIE--------KAQKLV 242
           L+ WG +  G +G+     + +P+   +   R +  D   ++   +         A   +
Sbjct: 163 LWAWGSNRQGLVGDGSGLDQHAPVQIGTGFTRVAVGDWHAAAVKADGSAWTWGSNASGQL 222

Query: 243 SEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLG 297
            +G       P    P  V   EV++IA G  H++ L  +G ++  G+N  GQLG
Sbjct: 223 GDGTIASTPRPT---PAQVLPAEVMEIAAGGAHTVALRSDGSIMVWGTNRDGQLG 274



 Score = 71.6 bits (174), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 75/279 (26%), Positives = 119/279 (42%), Gaps = 18/279 (6%)

Query: 55  EPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVE 114
            PT    LP++V  ++AG  H++A+ ++G++  WG N + QLG G    R     P  + 
Sbjct: 232 RPTPAQVLPAEVMEIAAGGAHTVALRSDGSIMVWGTNRDGQLGDGTTTGR---RSPVLLG 288

Query: 115 GLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKI 174
           G   V + AA        A   DG+LW  G ++ GQLG G   + + + +RV    G   
Sbjct: 289 GGGFVQIAAAANHTAALKA---DGTLWTCGANESGQLGDGTFASRSWL-TRV----GSGF 340

Query: 175 VKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSST 234
            +V+ G  H  A   DG  + WG    G+ G+   +  + P       +  +     S  
Sbjct: 341 AQVAVGSRHMAAIAADGSRWAWGNDDFGQAGDGSWSRSAVPAQVGSGFARVAAGLGHSLG 400

Query: 235 IEKAQKLVSEGMEKEKYM------PIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSC 288
           ++    L + G+     +      P    P  + G     +A G+ HSL +  +G L S 
Sbjct: 401 VKADGTLWAWGLNDMGQVGDGTDAPQRGAPVRI-GEAFAQVAAGYQHSLAVAADGTLWSW 459

Query: 289 GSNVYGQLGREKQDMGMFPVDINFHPVSISSGLGHSLAI 327
           GSN  GQLG         P  I    V +++G  HS  +
Sbjct: 460 GSNSSGQLGDPSVASRHTPAQIGSGFVRVAAGRWHSAGV 498



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 68/260 (26%), Positives = 112/260 (43%), Gaps = 66/260 (25%)

Query: 69  VSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRV-EGLDQVNVCAAFAS 127
           V+AG+ HSLAV  +G +W+WG N+  QLG  ++ SR T   P ++  G  +V      ++
Sbjct: 440 VAAGYQHSLAVAADGTLWSWGSNSSGQLGDPSVASRHT---PAQIGSGFVRVAAGRWHSA 496

Query: 128 GVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQ 187
           GV +     DG+LW+WG    G +G   D      P++V    G   ++V+ G  H +A 
Sbjct: 497 GVKA-----DGTLWIWG----GDVGGTYD-----TPTQV----GSGFLEVAAGHEHTVAL 538

Query: 188 TEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGME 247
            EDG L+ WG +  G++                                       +G  
Sbjct: 539 AEDGTLWTWGNNGLGQL--------------------------------------CDGTF 560

Query: 248 KEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFP 307
            ++  P+        G   V +A G  H++ L  +G L +CG N  GQLG          
Sbjct: 561 DQRIAPV------QVGTGFVHVAAGAYHTVALEADGTLWACGENGAGQLGDGTTTSSAAL 614

Query: 308 VDINFHPVSISSGLGHSLAI 327
           + +     ++S+G  H++A+
Sbjct: 615 LGVGTGFAAVSAGELHTVAV 634



 Score = 61.6 bits (148), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 92/338 (27%), Positives = 146/338 (43%), Gaps = 48/338 (14%)

Query: 31  SFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGR 90
           ++G   QG +G      G G D + P ++    +  T V+ G +H+ AV  +G+ W WG 
Sbjct: 165 AWGSNRQGLVG-----DGSGLDQHAPVQIG---TGFTRVAVGDWHAAAVKADGSAWTWGS 216

Query: 91  NNEVQLGRGALES--RATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKR 148
           N   QLG G + S  R T   P +V   + + + A  A  V   A+  DGS+ VWG ++ 
Sbjct: 217 NASGQLGDGTIASTPRPT---PAQVLPAEVMEIAAGGAHTV---ALRSDGSIMVWGTNRD 270

Query: 149 GQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLG 208
           GQLG   D T     S V  L G   V+++    H  A   DG L+  G +  G++G+  
Sbjct: 271 GQLG---DGTTTGRRSPV-LLGGGGFVQIAAAANHTAALKADGTLWTCGANESGQLGDGT 326

Query: 209 KALES--SPLDSNIDRSSESDQEISSSTIEKAQ--------KLVSEGMEKEKYMPIIWEP 258
            A  S  + + S   + +   + +++   + ++            +G      +P     
Sbjct: 327 FASRSWLTRVGSGFAQVAVGSRHMAAIAADGSRWAWGNDDFGQAGDGSWSRSAVPA---- 382

Query: 259 FLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQL--GREKQDMGMFPVDINFHPVS 316
               G     +A G  HSL +  +G L + G N  GQ+  G +    G  PV I      
Sbjct: 383 --QVGSGFARVAAGLGHSLGVKADGTLWAWGLNDMGQVGDGTDAPQRGA-PVRIGEAFAQ 439

Query: 317 ISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLG 354
           +++G  HSLA+    +         + SWG N S QLG
Sbjct: 440 VAAGYQHSLAVAADGT---------LWSWGSNSSGQLG 468



 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 51/148 (34%), Positives = 69/148 (46%), Gaps = 15/148 (10%)

Query: 49  VGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWN 108
           VGG    PT+V    S    V+AGH H++A+  +G +W WG N   QL  G  + R    
Sbjct: 511 VGGTYDTPTQVG---SGFLEVAAGHEHTVALAEDGTLWTWGNNGLGQLCDGTFDQRIA-- 565

Query: 109 DPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEA 168
            P +V G   V+V A     V   A+  DG+LW  G++  GQLG G   + A +      
Sbjct: 566 -PVQV-GTGFVHVAAGAYHTV---ALEADGTLWACGENGAGQLGDGTTTSSAALLG---- 616

Query: 169 LAGEKIVKVSFGWGHALAQTEDGKLFGW 196
             G     VS G  H +A   DG L+ W
Sbjct: 617 -VGTGFAAVSAGELHTVAVKADGTLWSW 643



 Score = 38.9 bits (89), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 35/106 (33%), Positives = 54/106 (50%), Gaps = 9/106 (8%)

Query: 61  GLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVN 120
           G+ +   +VSAG  H++AV  +G +W+WG  +  +LG GA + R    +P ++       
Sbjct: 616 GVGTGFAAVSAGELHTVAVKADGTLWSWGSGSLGELGGGAFDWRP---EPTQIGSGAAQV 672

Query: 121 VCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRV 166
                 + VV +    DG+LW  G+S  GQLG G      +VP RV
Sbjct: 673 AAGGAHTLVVKA----DGTLWAVGQSAFGQLGDG--TVSTLVPVRV 712


>gi|426344976|ref|XP_004039179.1| PREDICTED: E3 ISG15--protein ligase HERC5 [Gorilla gorilla gorilla]
          Length = 1016

 Score = 91.3 bits (225), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 71/230 (30%), Positives = 113/230 (49%), Gaps = 24/230 (10%)

Query: 24  ASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVP-------GLPSDVTSVSAGHYHS 76
           + G  + ++G    G LG+        G  +  T  P       G+P  +  +SAG  HS
Sbjct: 154 SKGGELFAWGQNLHGQLGV--------GRKFPSTTTPQIVEHLAGVP--LAQISAGEAHS 203

Query: 77  LAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGD 136
           +A++ +G +++WG+N   QLG G  ES+   + P  +EGLD   V      G  S+ +  
Sbjct: 204 MALSMSGNIYSWGKNEFGQLGLGHTESK---DYPSLIEGLDNQKVEFVACGGSHSALLTQ 260

Query: 137 DGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTED-GKLFG 195
           DG L+ +G  K GQLG      E + P  V  L G ++ +++ G  H LA   D GK+F 
Sbjct: 261 DGLLFTFGAGKHGQLGHNSTQNE-LRPCLVAELVGYRVTQIACGRWHTLAYVSDLGKVFS 319

Query: 196 WGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEG 245
           +G   DG++GN G   +  PL   +  SS  + ++ S T EK   +++ G
Sbjct: 320 FGSGKDGQLGNGGTRDQLMPLPVKV--SSSEELKLESHTSEKELIMIAGG 367



 Score = 82.4 bits (202), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 81/281 (28%), Positives = 120/281 (42%), Gaps = 47/281 (16%)

Query: 66  VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAF 125
           +  ++ G YHSLA++  G ++AWG+N   QLG G      T   P+ VE L  V +    
Sbjct: 140 IIQITCGDYHSLALSKGGELFAWGQNLHGQLGVGRKFPSTT--TPQIVEHLAGVPLAQIS 197

Query: 126 ASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHAL 185
           A    S A+   G+++ WGK++ GQLGLG   ++   PS +E L  +K+  V+ G  H+ 
Sbjct: 198 AGEAHSMALSMSGNIYSWGKNEFGQLGLGHTESKD-YPSLIEGLDNQKVEFVACGGSHSA 256

Query: 186 AQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEG 245
             T+DG LF +G    G++G+     E  P                         LV+E 
Sbjct: 257 LLTQDGLLFTFGAGKHGQLGHNSTQNELRPC------------------------LVAE- 291

Query: 246 MEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRN-GVLLSCGSNVYGQLGREKQDMG 304
                          + G  V  IACG  H+L    + G + S GS   GQLG       
Sbjct: 292 ---------------LVGYRVTQIACGRWHTLAYVSDLGKVFSFGSGKDGQLGNGGTRDQ 336

Query: 305 MFPVDINFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSW 345
           + P+ +    VS S  L       E     + GG + I+ W
Sbjct: 337 LMPLPVK---VSSSEELKLESHTSEKELIMIAGGNQSILLW 374



 Score = 49.3 bits (116), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 47/183 (25%), Positives = 85/183 (46%), Gaps = 31/183 (16%)

Query: 168 ALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDR----- 222
            L  +KI++++ G  H+LA ++ G+LF WG +  G++G +G+   S+     ++      
Sbjct: 134 VLQEKKIIQITCGDYHSLALSKGGELFAWGQNLHGQLG-VGRKFPSTTTPQIVEHLAGVP 192

Query: 223 -SSESDQEISSSTIEKAQKLVSEG-----------MEKEKYMPIIWEPFLVEGVE---VV 267
            +  S  E  S  +  +  + S G            E + Y      P L+EG++   V 
Sbjct: 193 LAQISAGEAHSMALSMSGNIYSWGKNEFGQLGLGHTESKDY------PSLIEGLDNQKVE 246

Query: 268 DIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPV----DINFHPVSISSGLGH 323
            +ACG  HS +L ++G+L + G+  +GQLG       + P      + +    I+ G  H
Sbjct: 247 FVACGGSHSALLTQDGLLFTFGAGKHGQLGHNSTQNELRPCLVAELVGYRVTQIACGRWH 306

Query: 324 SLA 326
           +LA
Sbjct: 307 TLA 309



 Score = 47.4 bits (111), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 37/120 (30%), Positives = 62/120 (51%), Gaps = 16/120 (13%)

Query: 260 LVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFH----PV 315
           +++  +++ I CG  HSL L + G L + G N++GQLG  ++        I  H    P+
Sbjct: 134 VLQEKKIIQITCGDYHSLALSKGGELFAWGQNLHGQLGVGRKFPSTTTPQIVEHLAGVPL 193

Query: 316 S-ISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQ--LGRMGPDNVPLVVEGLEGES 372
           + IS+G  HS+A+      +++G    I SWG N   Q  LG     + P ++EGL+ + 
Sbjct: 194 AQISAGEAHSMAL------SMSG---NIYSWGKNEFGQLGLGHTESKDYPSLIEGLDNQK 244


>gi|387928890|ref|ZP_10131567.1| regulator of chromosome condensation-like protein [Bacillus
           methanolicus PB1]
 gi|387585708|gb|EIJ78032.1| regulator of chromosome condensation-like protein [Bacillus
           methanolicus PB1]
          Length = 641

 Score = 90.9 bits (224), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 106/357 (29%), Positives = 150/357 (42%), Gaps = 83/357 (23%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAW 88
           V ++G    G LG      G   D+  P  V  L ++   V+AG +HSLA+ +N  V AW
Sbjct: 53  VCAWGANYSGQLG-----DGTLNDSNIPEIVTAL-TNAIEVAAGVFHSLALLSNSTVRAW 106

Query: 89  GRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKR 148
           G N   QLG G   S      P  V GL   N  A  A    S A+ +DG++  WG +  
Sbjct: 107 GDNFAGQLGDGTFNSSTV---PVSVIGL--TNAIAISAGLNHSLALLNDGTVRAWGGNFF 161

Query: 149 GQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLG 208
           GQLG G DIT     + V  L    +V VS G  H+LA   DG +  WG +  G++G+  
Sbjct: 162 GQLGNGTDITSN---APVIILGLSNVVAVSAGGEHSLALLYDGTVCAWGANYSGQLGD-- 216

Query: 209 KALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGV---- 264
                    +N DRS                                  P  V+G+    
Sbjct: 217 --------GTNTDRSI---------------------------------PVQVKGIGGSG 235

Query: 265 ---EVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDIN--------FH 313
               V+ I+ G  HSL L  +G +L+ G+N YGQLG         PV +          +
Sbjct: 236 VLNNVIAISAGEFHSLALLNDGTVLAWGNNDYGQLGDGTNTESNVPVQVKGTGGYGVLNN 295

Query: 314 PVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQL--GRMGPDNVPLVVEGL 368
             +I++G  HSLA+    +         +++WG N S QL  G     ++P+ V GL
Sbjct: 296 VAAIAAGGFHSLALLNDGT---------VLAWGNNESGQLGDGSNSDSDIPVTVSGL 343



 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 50/148 (33%), Positives = 78/148 (52%), Gaps = 16/148 (10%)

Query: 32  FGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRN 91
            GDG+     +P  + G+GG         G+ ++V ++SAG +HSLA+ N+G V AWG N
Sbjct: 214 LGDGTNTDRSIPVQVKGIGGS--------GVLNNVIAISAGEFHSLALLNDGTVLAWGNN 265

Query: 92  NEVQLGRGALESRATWNDPKRVEGLDQV----NVCAAFASGVVSSAIGDDGSLWVWGKSK 147
           +  QLG G   +    N P +V+G        NV A  A G  S A+ +DG++  WG ++
Sbjct: 266 DYGQLGDG---TNTESNVPVQVKGTGGYGVLNNVAAIAAGGFHSLALLNDGTVLAWGNNE 322

Query: 148 RGQLGLGKDITEAIVPSRVEALAGEKIV 175
            GQLG G + +++ +P  V  L     +
Sbjct: 323 SGQLGDGSN-SDSDIPVTVSGLTNSNTI 349


>gi|339234781|ref|XP_003378945.1| putative HECT-domain protein [Trichinella spiralis]
 gi|316978479|gb|EFV61464.1| putative HECT-domain protein [Trichinella spiralis]
          Length = 994

 Score = 90.9 bits (224), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 81/298 (27%), Positives = 131/298 (43%), Gaps = 59/298 (19%)

Query: 66  VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAF 125
           V SV+ G  H +A+TN+G +++WG N   QLG   +   A    P R++ ++  N+    
Sbjct: 114 VISVACGDAHCVALTNDGHLFSWGSNVYGQLGVERMNVVAKARYP-RIQEINLANIVQIA 172

Query: 126 ASGVVSSAI-GDDGSLWVWGKSKRGQLGLGKDITEAIV-PSRVEALAGEKIVKVSFGWGH 183
                S A+   DG L  WG +  GQLG+G    E+ + P+ V  L G  I +++ G  H
Sbjct: 173 CGSNHSLALESTDGVLHAWGLNDHGQLGIGT--RESFIGPTTVNKLMGIPICQLAAGASH 230

Query: 184 ALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVS 243
           +L  T  G +FGWG +  G+IG                      ++I   ++ K      
Sbjct: 231 SLVLTPSGTVFGWGKNMFGQIG------------------QNEQRDILYPSLVK------ 266

Query: 244 EGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDM 303
                           L+   +V+ +ACG D S+ +   G L + G+  YGQLG   Q+ 
Sbjct: 267 ----------------LLRTQKVIRLACGEDFSVAVTATGGLFTFGAGTYGQLGHGNQNS 310

Query: 304 GMFPVDINFHP----VSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMG 357
            +FP  +        + ++ G  H+LAI E +          + ++G N S QLG + 
Sbjct: 311 ELFPKQVMELMGSVVLDVACGRCHTLAITENK----------LYAFGLNTSGQLGLLN 358



 Score = 70.9 bits (172), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 64/210 (30%), Positives = 99/210 (47%), Gaps = 16/210 (7%)

Query: 33  GDGSQGALGLPTSLTGVGGDAYEPT---RVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWG 89
           G    G LG+ T  + +G     PT   ++ G+P  +  ++AG  HSL +T +G V+ WG
Sbjct: 192 GLNDHGQLGIGTRESFIG-----PTTVNKLMGIP--ICQLAAGASHSLVLTPSGTVFGWG 244

Query: 90  RNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRG 149
           +N   Q+G+   E R     P  V+ L    V         S A+   G L+ +G    G
Sbjct: 245 KNMFGQIGQN--EQRDILY-PSLVKLLRTQKVIRLACGEDFSVAVTATGGLFTFGAGTYG 301

Query: 150 QLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLG- 208
           QLG G   +E + P +V  L G  ++ V+ G  H LA TE+ KL+ +G +  G++G L  
Sbjct: 302 QLGHGNQNSE-LFPKQVMELMGSVVLDVACGRCHTLAITEN-KLYAFGLNTSGQLGLLNV 359

Query: 209 KALESSPLDSNIDRSSESDQEISSSTIEKA 238
           K   S PL   I++    + +       KA
Sbjct: 360 KHTTSIPLPIPIEKQPRKNGDDDGGGDNKA 389



 Score = 58.2 bits (139), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 68/239 (28%), Positives = 103/239 (43%), Gaps = 48/239 (20%)

Query: 124 AFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVP-SRVEALAGE-KIVKVSFGW 181
           A+A   +   I    SL   G +  GQLGLG    E +   + VE+     KI +++ G 
Sbjct: 2   AYAISCILKLILKSMSLLCCGNTSDGQLGLGGIAEENVRSLTLVESTKNFLKIRQIACGR 61

Query: 182 GHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKL 241
            H++   +DG +F  G +   ++G+ G           I R     + +    I+  Q  
Sbjct: 62  HHSVMLLDDGSVFSCGNNDFYQLGHDG-----------IKRKPNLYENLHW-YIDVKQSF 109

Query: 242 VSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQ 301
           V                    G+ V+ +ACG  H + L  +G L S GSNVYGQLG E+ 
Sbjct: 110 V--------------------GIHVISVACGDAHCVALTNDGHLFSWGSNVYGQLGVERM 149

Query: 302 DM---GMFP--VDINF-HPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLG 354
           ++     +P   +IN  + V I+ G  HSLA+        T G   + +WG N   QLG
Sbjct: 150 NVVAKARYPRIQEINLANIVQIACGSNHSLAL------ESTDGV--LHAWGLNDHGQLG 200


>gi|254390857|ref|ZP_05006068.1| immunoglobulin I-set domain-containing protein [Streptomyces
           clavuligerus ATCC 27064]
 gi|197704555|gb|EDY50367.1| immunoglobulin I-set domain-containing protein [Streptomyces
           clavuligerus ATCC 27064]
          Length = 650

 Score = 90.9 bits (224), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 87/282 (30%), Positives = 132/282 (46%), Gaps = 30/282 (10%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAW 88
           V ++G   +G LG  T+      D   P  V GL S ++ ++AG  H+LAV + G V +W
Sbjct: 350 VQAWGGNDKGQLGNGTTT-----DQGFPAMVAGL-SGISEIAAGGDHALAV-HGGRVMSW 402

Query: 89  GRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKR 148
           G N + QLG GA         P  V+ L +V    A  +   S A+G DG+LW WG   +
Sbjct: 403 GGNGKGQLGAGAATDPT--KTPVVVQSLTRVKDVGAGCA--FSVALGQDGTLWSWGAGAK 458

Query: 149 GQLGLG-KDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNL 207
           GQLGLG  ++T+   P +V+ ++   I  ++ G  H LA T  GK+  WG + +G++GN 
Sbjct: 459 GQLGLGAANLTDHNTPQQVKGVS--DIAAIAVGCEHVLALTSTGKVKAWGGNTNGQLGNN 516

Query: 208 GKALESSPLD--------SNIDRSSESDQEISSSTI----EKAQKLVSEGMEKEKYMPII 255
                  P+D        S    +  S   +S  T+       +  + +G    +  P+ 
Sbjct: 517 TTTDSGEPVDVQFVDAVTSLYATAYGSFATLSDGTVWAWGANTKGQLGDGTLLNRTTPVP 576

Query: 256 WEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLG 297
            E         V IA G DH++    NG + + G N  GQLG
Sbjct: 577 IETL----SGAVHIAGGSDHTVAARDNGSVTAWGDNAKGQLG 614



 Score = 64.7 bits (156), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 69/249 (27%), Positives = 100/249 (40%), Gaps = 50/249 (20%)

Query: 65  DVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAA 124
            V   S G   ++A+  NG V AWG N++ QLG G    +     P  V GL  ++  AA
Sbjct: 330 QVDGPSLGRPFAVALMENGTVQAWGGNDKGQLGNGTTTDQGF---PAMVAGLSGISEIAA 386

Query: 125 FASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHA 184
                ++      G +  WG + +GQLG G        P  V++L   ++  V  G   +
Sbjct: 387 GGDHALAV---HGGRVMSWGGNGKGQLGAGAATDPTKTPVVVQSLT--RVKDVGAGCAFS 441

Query: 185 LAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSE 244
           +A  +DG L+ WG  A G++G LG A   +  D N                         
Sbjct: 442 VALGQDGTLWSWGAGAKGQLG-LGAA---NLTDHNT------------------------ 473

Query: 245 GMEKEKYMPIIWEPFLVEGV-EVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDM 303
                        P  V+GV ++  IA G +H L L   G + + G N  GQLG      
Sbjct: 474 -------------PQQVKGVSDIAAIAVGCEHVLALTSTGKVKAWGGNTNGQLGNNTTTD 520

Query: 304 GMFPVDINF 312
              PVD+ F
Sbjct: 521 SGEPVDVQF 529



 Score = 58.2 bits (139), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 54/151 (35%), Positives = 75/151 (49%), Gaps = 13/151 (8%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAW 88
           V ++G  + G LG  T+      D+ EP  V      VTS+ A  Y S A  ++G VWAW
Sbjct: 502 VKAWGGNTNGQLGNNTTT-----DSGEPVDVQ-FVDAVTSLYATAYGSFATLSDGTVWAW 555

Query: 89  GRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKR 148
           G N + QLG G L +R T   P  +E L      A  +   V++   D+GS+  WG + +
Sbjct: 556 GANTKGQLGDGTLLNRTT---PVPIETLSGAVHIAGGSDHTVAAR--DNGSVTAWGDNAK 610

Query: 149 GQLGLGKDITEAIVPSRVEAL-AGEKIVKVS 178
           GQLG G   T A  P  V  L  G  ++KV+
Sbjct: 611 GQLGDGT-TTSAPKPGTVTTLPPGSGVLKVA 640


>gi|145594132|ref|YP_001158429.1| regulator of chromosome condensation, RCC1 [Salinispora tropica
           CNB-440]
 gi|145303469|gb|ABP54051.1| regulator of chromosome condensation, RCC1 [Salinispora tropica
           CNB-440]
          Length = 570

 Score = 90.9 bits (224), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 96/333 (28%), Positives = 139/333 (41%), Gaps = 65/333 (19%)

Query: 28  AVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWA 87
           A +++GD + G LG  T+    G +   P  +P   +D T+V AG +HSLA+T+ G V A
Sbjct: 58  AFLAWGDNAFGQLGDGTT---TGSNTPLPVSLPA-GTDATAVVAGDFHSLALTSAGTVLA 113

Query: 88  WGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSK 147
           WGRN+  QLG G   S +T    +   G+    V A F     S A+   G +  WG + 
Sbjct: 114 WGRNDSGQLGDGTTVSSSTPVVVRLPVGVTVTAVAAGFGH---SLALTSTGVVLAWGSNS 170

Query: 148 RGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNL 207
            GQLG G  ++ +  P  V    G  +  V+ G GH+LA T  G    WG +  G++G+ 
Sbjct: 171 FGQLGDGTTVSSS-TPVAVRLPVGVTVTAVAAGSGHSLALTSVGAALAWGNNFSGQLGD- 228

Query: 208 GKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVV 267
                                 +SSST    +            +P+        G  V 
Sbjct: 229 -------------------GTTVSSSTPVAVR------------LPV--------GTTVT 249

Query: 268 DIACGFDHSLVLGRNGVLLSCGSNVYGQLG------REKQDMGMFPVDINFHPVSISSGL 321
            +A G  HSL L   G  L+ G N  GQLG           +   PV       +++ G 
Sbjct: 250 AVAGGSHHSLALTSAGAALAWGGNFSGQLGDGTTVSSSTPVVVSLPVGTTV--TALAGGD 307

Query: 322 GHSLAICEVRSSNVTGGARGIVSWGWNRSSQLG 354
            HS+A+           A   ++WG N   QLG
Sbjct: 308 AHSVALTS---------AGAALAWGSNGDGQLG 331



 Score = 71.6 bits (174), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 79/291 (27%), Positives = 123/291 (42%), Gaps = 27/291 (9%)

Query: 66  VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAF 125
           VT+V+AG  HSLA+T+ G V AWG N+  QLG G   S +T   P  V     V V A  
Sbjct: 144 VTAVAAGFGHSLALTSTGVVLAWGSNSFGQLGDGTTVSSST---PVAVRLPVGVTVTAVA 200

Query: 126 ASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHAL 185
           A    S A+   G+   WG +  GQLG G  ++ +  P  V    G  +  V+ G  H+L
Sbjct: 201 AGSGHSLALTSVGAALAWGNNFSGQLGDGTTVSSS-TPVAVRLPVGTTVTAVAGGSHHSL 259

Query: 186 AQTEDGKLFGWGYSADGRIGN------LGKALESSPLDSNIDRSSESDQEISSSTIEKAQ 239
           A T  G    WG +  G++G+          + S P+ + +   +  D    + T   A 
Sbjct: 260 ALTSAGAALAWGGNFSGQLGDGTTVSSSTPVVVSLPVGTTVTALAGGDAHSVALTSAGAA 319

Query: 240 KL--------VSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFD--HSLVLGRNGVLLSCG 289
                     + +G   +  +PI      +     +      D  H+L +   G  L+ G
Sbjct: 320 LAWGSNGDGQLGDGTNADSSVPIAVS---LPAGATITAIAAHDGAHNLAITSTGAALAWG 376

Query: 290 SNVYGQLGREKQDMGMFPVDINFHP----VSISSGLGHSLAICEVRSSNVT 336
            N  GQLG         P+ ++        +I++ + HSLA+    S++ T
Sbjct: 377 GNGDGQLGDGTNADSSVPIAVSLPAGTTITAIAASVEHSLALAAPPSTSTT 427



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 49/154 (31%), Positives = 69/154 (44%), Gaps = 5/154 (3%)

Query: 64  SDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCA 123
           + VT+V+ G +HSLA+T+ GA  AWG N   QLG G   S +T      V  L       
Sbjct: 246 TTVTAVAGGSHHSLALTSAGAALAWGGNFSGQLGDGTTVSSST----PVVVSLPVGTTVT 301

Query: 124 AFASGVVSS-AIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWG 182
           A A G   S A+   G+   WG +  GQLG G +   ++  +             +    
Sbjct: 302 ALAGGDAHSVALTSAGAALAWGSNGDGQLGDGTNADSSVPIAVSLPAGATITAIAAHDGA 361

Query: 183 HALAQTEDGKLFGWGYSADGRIGNLGKALESSPL 216
           H LA T  G    WG + DG++G+   A  S P+
Sbjct: 362 HNLAITSTGAALAWGGNGDGQLGDGTNADSSVPI 395


>gi|66801165|ref|XP_629508.1| regulator of chromosome condensation  domain-containing protein
           [Dictyostelium discoideum AX4]
 gi|60462899|gb|EAL61096.1| regulator of chromosome condensation  domain-containing protein
           [Dictyostelium discoideum AX4]
          Length = 455

 Score = 90.9 bits (224), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 92/353 (26%), Positives = 153/353 (43%), Gaps = 57/353 (16%)

Query: 25  SGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPS--DVTSVSAGHYHSLAVTN- 81
           S   + SFG      LG+P +      D   PT++  LP    +    +   +S  +T+ 
Sbjct: 45  SRQKLFSFGSFDNLKLGVPGN-----NDKLIPTQITHLPPFLKIKQFGSSWLNSFLLTDE 99

Query: 82  --------NGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSA 133
                   +  V+ WG N     G  +L S   +  P  ++ L    V         +  
Sbjct: 100 QNENDPTISNKVYMWGTNKS---GNMSLPSEQ-YRFPTTIDLLKNTFVEKVIGGRSFTLV 155

Query: 134 IGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKL 193
           +  DG +  +G++  GQLGLG D      P+ VE L  + I+ +  G  H++A T+ G +
Sbjct: 156 LTRDGKVLGFGENNFGQLGLG-DTRNRTAPTPVETLNNQHIIDIGVGLDHSIAVTKAGHV 214

Query: 194 FGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMP 253
           FGWGY+ +G+IG   K +E + ++             S++ +   ++    G  +E+ +P
Sbjct: 215 FGWGYNVEGQIGQ--KVVEYTRMN-------------STTEVMDGEEEGGAGSLREQMIP 259

Query: 254 IIWE--PFLVEGVEVVDIA---CGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMF-- 306
            +    P LV G+E + I+   CG+D + +L   G + S GSN  G LG   +  G    
Sbjct: 260 DVEYTLPTLVPGLEQIKISNVFCGYDSTFLLSARGNVYSFGSNEIGTLGLGSELKGRVTK 319

Query: 307 PVDINFHPVS-----ISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLG 354
           P  I F   +     +SSG  H+L +        +GG   + S GW    +LG
Sbjct: 320 PTKIKFTETNEKIKQLSSGASHTLFLT-------SGG--NVYSCGWGTEGRLG 363



 Score = 79.0 bits (193), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 79/335 (23%), Positives = 138/335 (41%), Gaps = 76/335 (22%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSD-VTSVSAGHYHSLAVTNNGAVWA 87
           V+ FG+ + G LGL     G   +   PT V  L +  +  +  G  HS+AVT  G V+ 
Sbjct: 162 VLGFGENNFGQLGL-----GDTRNRTAPTPVETLNNQHIIDIGVGLDHSIAVTKAGHVFG 216

Query: 88  WGRNNEVQLGRGALESR---------------------------ATWNDPKRVEGLDQVN 120
           WG N E Q+G+  +E                               +  P  V GL+Q+ 
Sbjct: 217 WGYNVEGQIGQKVVEYTRMNSTTEVMDGEEEGGAGSLREQMIPDVEYTLPTLVPGLEQIK 276

Query: 121 VCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIV-PSRVEAL-AGEKIVKVS 178
           +   F     +  +   G+++ +G ++ G LGLG ++   +  P++++     EKI ++S
Sbjct: 277 ISNVFCGYDSTFLLSARGNVYSFGSNEIGTLGLGSELKGRVTKPTKIKFTETNEKIKQLS 336

Query: 179 FGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKA 238
            G  H L  T  G ++  G+  +GR   LG  +++S  DS                    
Sbjct: 337 SGASHTLFLTSGGNVYSCGWGTEGR---LGLGMDTSNRDS-------------------- 373

Query: 239 QKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGR 298
                         P + + F    +++V +A G  HS+ L   G + + G+   G+LG 
Sbjct: 374 --------------PTLLKYFNQNKIKIVKVAAGGSHSMALDDQGRVYTWGNGSNGKLGH 419

Query: 299 EKQDMGMFPVDINF----HPVSISSGLGHSLAICE 329
             +     P  INF    + + I +G+ +SL + +
Sbjct: 420 GNESDENLPKQINFFSHSNVIDIFAGIDNSLVLIK 454


>gi|67617767|ref|XP_667559.1| hect domain and RLD 2 [Cryptosporidium hominis TU502]
 gi|54658712|gb|EAL37335.1| hect domain and RLD 2 [Cryptosporidium hominis]
          Length = 1878

 Score = 90.9 bits (224), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 72/274 (26%), Positives = 112/274 (40%), Gaps = 54/274 (19%)

Query: 26  GTAVVSFGDGSQGALGLPT----SLTGVGGDAY--EPTRVPGLPSDVTSVSAGHYHSLAV 79
           G  + ++GD   G LG+ T    S  G   +++  EPT +      +  V+ G +HSL  
Sbjct: 506 GGTIFAWGDNKYGQLGIDTRRRKSQDGDKNESFLNEPTEIK-FSEPIRRVACGSWHSLCC 564

Query: 80  TNNGAVWAWGRNNEVQLGRGALESR------ATWNDPKRVEGLDQVNVC--AAFASGVVS 131
              G  ++WGR +  QLG GA+ +        T  +   V G +  + C  A   +G   
Sbjct: 565 DIKGNCFSWGRGDRGQLGTGAIRNLYEPAGIVTLKNVIEVAGGELYSACIVACITTGNKD 624

Query: 132 SAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDG 191
               + G LW+WG    G+LGLG  + ++ + +      G  I+KV+ G  H LA T  G
Sbjct: 625 LDTINSGDLWIWGDGDLGKLGLGDHVLKSCIAAPRHLNLGTPIIKVALGSSHTLALTASG 684

Query: 192 KLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKY 251
           +L  WG    GR+G       S+P+                                   
Sbjct: 685 ELITWGAGYYGRLGTNSTKSHSNPIKIR-------------------------------- 712

Query: 252 MPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVL 285
                  F ++GV++VDIA G  HS+ +   G L
Sbjct: 713 -------FPIKGVQIVDIAVGSYHSMAVSSLGDL 739



 Score = 86.3 bits (212), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 51/171 (29%), Positives = 87/171 (50%), Gaps = 10/171 (5%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSD--VTSVSAGHYHSLAVTNNGAVW 86
           V ++G G  G LG     TG   D Y P ++   P+D  V  ++AG  HSL    +G V+
Sbjct: 187 VFAWGIGQYGCLG-----TGELNDVYSPVKIEAGPTDKKVLHIAAGARHSLCCNEDGQVF 241

Query: 87  AWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKS 146
           AWG N+  +LG G   S      P +++ L Q ++    A    S  I   G ++ WG  
Sbjct: 242 AWGSNSNGRLGTGG--SYGMKTVPTQIKSLSQYHITLVAAGESHSGCIDSFGYIYTWGNG 299

Query: 147 KRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWG 197
             G+LG G   ++  +P R+E ++    V+++ G  +++A ++ G+++ WG
Sbjct: 300 GSGKLGHGTQ-SDCNIPRRIEGISSLPFVQLTLGAFNSMALSQSGEVYIWG 349



 Score = 71.6 bits (174), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 67/230 (29%), Positives = 102/230 (44%), Gaps = 25/230 (10%)

Query: 9   HNHVNVLTSRIFMRSASGTAVVSFGDGSQGALGLPTSLTGVGGDA---------YEPTR- 58
           ++H  VL   I    ASG  V + G G +G LG     T  G +          Y P   
Sbjct: 102 YSHTAVLVKGI--SEASGR-VYTMGLGDRGRLGYTRGHTEFGNEHDKNDLNESWYTPIPC 158

Query: 59  VPGLP--SDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVE-G 115
           +   P  + ++ +S G  HSLA++++G V+AWG      LG G L    +   P ++E G
Sbjct: 159 IVNFPFNAKISRISCGANHSLALSDSGLVFAWGIGQYGCLGTGELNDVYS---PVKIEAG 215

Query: 116 LDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIV 175
                V    A    S    +DG ++ WG +  G+LG G       VP+++++L+   I 
Sbjct: 216 PTDKKVLHIAAGARHSLCCNEDGQVFAWGSNSNGRLGTGGSYGMKTVPTQIKSLSQYHIT 275

Query: 176 KVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSE 225
            V+ G  H+      G ++ WG   +G  G LG   +S   D NI R  E
Sbjct: 276 LVAAGESHSGCIDSFGYIYTWG---NGGSGKLGHGTQS---DCNIPRRIE 319



 Score = 60.8 bits (146), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 81/327 (24%), Positives = 121/327 (37%), Gaps = 78/327 (23%)

Query: 70  SAGHYHSLA-VTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNV----CAA 124
           S  HY  +A + N G ++AWG N    LG G       +N P +V     + V    C  
Sbjct: 45  SLNHYFIVAKLKNKGQLYAWGVNTNNVLGLGI--ENGEFNFPMKVNFFSALEVFQVSCGY 102

Query: 125 FASGVVSSAIGD-DGSLWVWGKSKRGQLGLGKDITE---------------AIVPSRVEA 168
             + V+   I +  G ++  G   RG+LG  +  TE                 +P  V  
Sbjct: 103 SHTAVLVKGISEASGRVYTMGLGDRGRLGYTRGHTEFGNEHDKNDLNESWYTPIPCIVNF 162

Query: 169 LAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQ 228
               KI ++S G  H+LA ++ G +F WG    G+ G LG                    
Sbjct: 163 PFNAKISRISCGANHSLALSDSGLVFAWGI---GQYGCLGT------------------- 200

Query: 229 EISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSC 288
                           G   + Y P+  E    +  +V+ IA G  HSL    +G + + 
Sbjct: 201 ----------------GELNDVYSPVKIEAGPTDK-KVLHIAAGARHSLCCNEDGQVFAW 243

Query: 289 GSNVYGQLGR-EKQDMGMFPVDI----NFHPVSISSGLGHSLAICEVRSSNVTGGARGIV 343
           GSN  G+LG      M   P  I     +H   +++G  HS  I              I 
Sbjct: 244 GSNSNGRLGTGGSYGMKTVPTQIKSLSQYHITLVAAGESHSGCIDSFGY---------IY 294

Query: 344 SWGWNRSSQLGR--MGPDNVPLVVEGL 368
           +WG   S +LG       N+P  +EG+
Sbjct: 295 TWGNGGSGKLGHGTQSDCNIPRRIEGI 321



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 74/314 (23%), Positives = 121/314 (38%), Gaps = 79/314 (25%)

Query: 62  LPS-DVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLG--------RGALESRATWNDPKR 112
           +PS  V  ++ G  H+L +   G ++AWG N   QLG        +   ++ +  N+P  
Sbjct: 485 IPSWSVRQIACGTSHTLLLVYGGTIFAWGDNKYGQLGIDTRRRKSQDGDKNESFLNEPTE 544

Query: 113 VEGLDQVNVCAAFASGVVSSAIGD-DGSLWVWGKSKRGQLGLG--KDITE----AIVPSR 165
           ++  + +      A G   S   D  G+ + WG+  RGQLG G  +++ E      + + 
Sbjct: 545 IKFSEPIR---RVACGSWHSLCCDIKGNCFSWGRGDRGQLGTGAIRNLYEPAGIVTLKNV 601

Query: 166 VEALAGEK----IVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLG------KALESSP 215
           +E   GE     IV         L     G L+ WG   DG +G LG      K+  ++P
Sbjct: 602 IEVAGGELYSACIVACITTGNKDLDTINSGDLWIWG---DGDLGKLGLGDHVLKSCIAAP 658

Query: 216 LDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDH 275
              N+                                          G  ++ +A G  H
Sbjct: 659 RHLNL------------------------------------------GTPIIKVALGSSH 676

Query: 276 SLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINF-----HPVSISSGLGHSLAICEV 330
           +L L  +G L++ G+  YG+LG         P+ I F       V I+ G  HS+A+  +
Sbjct: 677 TLALTASGELITWGAGYYGRLGTNSTKSHSNPIKIRFPIKGVQIVDIAVGSYHSMAVSSL 736

Query: 331 RSSNVTGGARGIVS 344
               V G A  ++S
Sbjct: 737 GDLWVWGKAENVLS 750



 Score = 55.5 bits (132), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 56/197 (28%), Positives = 84/197 (42%), Gaps = 17/197 (8%)

Query: 16  TSRIFMRSASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYH 75
           +S     +ASG  ++++G G  G LG  T+ T    +  +  R P     +  ++ G YH
Sbjct: 674 SSHTLALTASGE-LITWGAGYYGRLG--TNSTKSHSNPIK-IRFPIKGVQIVDIAVGSYH 729

Query: 76  SLAVTNNGAVWAWGRNNEVQLGRGALESR--ATWNDPKRVEGLDQVNVCAAFASGVVSSA 133
           S+AV++ G +W WG+   V   +  L     A    P    G+ ++    AF  G VS A
Sbjct: 730 SMAVSSLGDLWVWGKAENVLSEKDVLTPYIFAKLESP---SGIPRIYSIHAF--GDVSYA 784

Query: 134 IGDDGSLWVWG---KSKRGQLGLGKDITEAIVPSRVE--ALAGEKIVKVSFGWGHALAQT 188
           I   G LW+WG          GL   I       R E   L G  I  VS    H +   
Sbjct: 785 ITQSGVLWIWGPENSETENIQGLETSIKIKSHTGRAEMIVLPGNAI-GVSGSTTHHVCLL 843

Query: 189 EDGKLFGWGYSADGRIG 205
             G++  WG  + G++G
Sbjct: 844 ASGEVVSWGDPSRGKLG 860



 Score = 52.8 bits (125), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 36/142 (25%), Positives = 64/142 (45%), Gaps = 17/142 (11%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPS-DVTSVSAGHYHSLAVTNNGAVWA 87
           V ++G  S G LG      G  G    PT++  L    +T V+AG  HS  + + G ++ 
Sbjct: 240 VFAWGSNSNGRLGT----GGSYGMKTVPTQIKSLSQYHITLVAAGESHSGCIDSFGYIYT 295

Query: 88  WGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSK 147
           WG     +LG G   +++  N P+R+EG+  +           S A+   G +++WG  +
Sbjct: 296 WGNGGSGKLGHG---TQSDCNIPRRIEGISSLPFVQLTLGAFNSMALSQSGEVYIWGAKQ 352

Query: 148 RGQLGLGKDITEAIVPSRVEAL 169
              + L         P++++A 
Sbjct: 353 HEIISL---------PTKIDAF 365



 Score = 42.4 bits (98), Expect = 0.40,   Method: Composition-based stats.
 Identities = 34/102 (33%), Positives = 47/102 (46%), Gaps = 22/102 (21%)

Query: 266 VVDIACGFDHSLVLGRNGVLLSCGSNVYGQLG-----REKQDMGMF------PVDINF-H 313
           V  IACG  H+L+L   G + + G N YGQLG     R+ QD          P +I F  
Sbjct: 490 VRQIACGTSHTLLLVYGGTIFAWGDNKYGQLGIDTRRRKSQDGDKNESFLNEPTEIKFSE 549

Query: 314 PV-SISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLG 354
           P+  ++ G  HSL  C+++ +          SWG     QLG
Sbjct: 550 PIRRVACGSWHSLC-CDIKGN--------CFSWGRGDRGQLG 582


>gi|330842136|ref|XP_003293040.1| hypothetical protein DICPUDRAFT_157834 [Dictyostelium purpureum]
 gi|325076672|gb|EGC30440.1| hypothetical protein DICPUDRAFT_157834 [Dictyostelium purpureum]
          Length = 1404

 Score = 90.9 bits (224), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 75/261 (28%), Positives = 120/261 (45%), Gaps = 27/261 (10%)

Query: 56  PTRVP-----GLPSDV-TSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWND 109
           P R+P       P +V   VS G+YH + +T +G VW WG N   QLG    +   + N 
Sbjct: 342 PVRIPTNFLENTPLNVIKQVSLGNYHIVILTESGNVWTWGLNTNGQLGYA--QDANSLNV 399

Query: 110 PKRVEGLDQVNVCAAFASGVV-SSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEA 168
           P+ VE    +      A+G+  ++A+ + G L++WG ++ G+LGLG D  +  VP+RV+ 
Sbjct: 400 PRMVE----IKCVKTIATGIRNTAALTEWGELYMWGINEHGELGLG-DTNDRRVPTRVQR 454

Query: 169 LAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQ 228
           L  E +  ++    H+   TE GK++ WG   +   G +     S P+ S +DR  ++  
Sbjct: 455 LKNEIVTVIACSSTHSACYTESGKMYLWGQCDEA--GKIQTIPTSIPIHSYLDREIKNSN 512

Query: 229 EISSSTIEKAQKLVSE---GMEKEKYMPIIWE------PF--LVEGVEVVDIACGFDHSL 277
            I     +  Q    E       +     +W       P    +E   V  I  G  H +
Sbjct: 513 GIYGGGGKIKQLACGEWCIAALTQMGEVFMWNVGGVPAPLRHALENHSVRSIVMGNFHLV 572

Query: 278 VLGRNGVLLSCGSNVYGQLGR 298
            L  +G +++ G N  GQLGR
Sbjct: 573 CLTDSGEVITIGRNKSGQLGR 593


>gi|282722852|gb|ADA84472.1| retinitis pigmentosa GTPase regulator protein 2 ORF15 [Danio rerio]
          Length = 1413

 Score = 90.9 bits (224), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 89/324 (27%), Positives = 155/324 (47%), Gaps = 36/324 (11%)

Query: 32  FGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSA-GHYHSLAVTNNGAVWAWGR 90
           FG  + G LGL T  T       +PT V  L S+   ++A G  H+L  T+ G ++A G 
Sbjct: 60  FGSNNWGQLGLGTKTT-----VNKPTCVKALRSERVKLTACGRTHTLVFTSRGNLYACGG 114

Query: 91  NNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGV-VSSAIGDDGSLWVWGKSKRG 149
           NNE QLG G    R +++    VE  ++       A+G   S+A+  DG L++ G +  G
Sbjct: 115 NNEGQLGLGDCNDRTSFH---LVEFFNKQGPIKMLAAGSNTSAALTQDGRLYMRGDNSEG 171

Query: 150 QLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGK 209
           Q+GLGK+ + A+ P  V    G+++  VS G+ H+   T DG L+ +G    G++G   +
Sbjct: 172 QIGLGKE-SNALTPQEVS--VGKRVFWVSCGYYHSAFVTVDGALYTFGEKDSGKLGLSTE 228

Query: 210 ALESSPLDSNI----DRSSE-----------SDQEISSSTIEKAQKLVSEGMEKEKYMPI 254
            L +  +   +    DR  +           ++ E+ S  + +  +L       E  +P 
Sbjct: 229 KLANHKVPQQVTDIPDRVVQVACGGGHTVALTENEVYSFGLGQFGQLGHGTFIFESRLPR 288

Query: 255 IWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDM------GMFPV 308
           + E F      V   ACG +H+ ++  NG+L + G   +G+LG  +++        + P 
Sbjct: 289 VVEHF--RKGRVKHAACGENHTALITDNGLLYTFGDGRHGKLGLGEENFTNQFKPTLCPR 346

Query: 309 DINFHPVSISSGLGHSLAICEVRS 332
            +++H  S++ G  H L + + R+
Sbjct: 347 FLDYHVHSVTCGGCHMLVLAKPRT 370



 Score = 67.8 bits (164), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 83/311 (26%), Positives = 134/311 (43%), Gaps = 73/311 (23%)

Query: 69  VSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLD----QVNVCAA 124
           +S G  H+  VT NG ++ +G NN  QLG G   ++ T N P  V+ L     ++  C  
Sbjct: 41  ISCGDEHTALVTENGKLFMFGSNNWGQLGLG---TKTTVNKPTCVKALRSERVKLTACGR 97

Query: 125 FASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVK-VSFGWGH 183
             + V +S     G+L+  G +  GQLGLG D  +      VE    +  +K ++ G   
Sbjct: 98  THTLVFTSR----GNLYACGGNNEGQLGLG-DCNDRTSFHLVEFFNKQGPIKMLAAGSNT 152

Query: 184 ALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVS 243
           + A T+DG+L+  G +++G+IG LGK  ES+ L         + QE+S            
Sbjct: 153 SAALTQDGRLYMRGDNSEGQIG-LGK--ESNAL---------TPQEVSVGKR-------- 192

Query: 244 EGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDM 303
                     + W            ++CG+ HS  +  +G L + G    G+LG   + +
Sbjct: 193 ----------VFW------------VSCGYYHSAFVTVDGALYTFGEKDSGKLGLSTEKL 230

Query: 304 GMFPV-----DINFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGR--- 355
               V     DI    V ++ G GH++A+ E            + S+G  +  QLG    
Sbjct: 231 ANHKVPQQVTDIPDRVVQVACGGGHTVALTE----------NEVYSFGLGQFGQLGHGTF 280

Query: 356 MGPDNVPLVVE 366
           +    +P VVE
Sbjct: 281 IFESRLPRVVE 291


>gi|149043902|gb|EDL97353.1| rCG61079, isoform CRA_b [Rattus norvegicus]
          Length = 1049

 Score = 90.9 bits (224), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 63/245 (25%), Positives = 113/245 (46%), Gaps = 43/245 (17%)

Query: 55  EPTRVPGLPS-DVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRV 113
           +P +V  L + ++ +VS G  H+LA+ + G V+AWG +++ QLG     S      P+ +
Sbjct: 74  KPEQVVALDAQNIVAVSCGEAHTLALNDKGQVYAWGLDSDGQLGLQG--SEECIRVPRNI 131

Query: 114 EGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEK 173
           + L  + +         S A+     ++ WG++K GQLGLG +  +   P  +++L G  
Sbjct: 132 KSLSDIQIVQVACGYYHSLALSKASEVFCWGQNKYGQLGLGIECQKQTSPQLIKSLLGIP 191

Query: 174 IVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSS 233
            ++V+ G  H+   T  G +FGWG +  G++G          L+                
Sbjct: 192 FMQVAAGGAHSFVLTLSGAIFGWGRNKFGQLG----------LND--------------- 226

Query: 234 TIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVY 293
                        E ++Y+P + +   +   ++V I CG DH+  L + G + + G+  Y
Sbjct: 227 -------------ENDRYVPNLLKS--LRSQKIVYICCGEDHTAALTKEGGVFTFGAGGY 271

Query: 294 GQLGR 298
           GQLG 
Sbjct: 272 GQLGH 276



 Score = 81.3 bits (199), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 58/188 (30%), Positives = 96/188 (51%), Gaps = 8/188 (4%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPS-DVTSVSAGHYHSLAVTNNGAVWA 87
           V ++G  S G LGL  S   +      P  +  L    +  V+ G+YHSLA++    V+ 
Sbjct: 105 VYAWGLDSDGQLGLQGSEECIR----VPRNIKSLSDIQIVQVACGYYHSLALSKASEVFC 160

Query: 88  WGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSK 147
           WG+N   QLG G    + T   P+ ++ L  +      A G  S  +   G+++ WG++K
Sbjct: 161 WGQNKYGQLGLGIECQKQT--SPQLIKSLLGIPFMQVAAGGAHSFVLTLSGAIFGWGRNK 218

Query: 148 RGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNL 207
            GQLGL  D  +  VP+ +++L  +KIV +  G  H  A T++G +F +G    G++G+ 
Sbjct: 219 FGQLGLN-DENDRYVPNLLKSLRSQKIVYICCGEDHTAALTKEGGVFTFGAGGYGQLGHN 277

Query: 208 GKALESSP 215
             + E +P
Sbjct: 278 STSHEINP 285



 Score = 68.9 bits (167), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 67/275 (24%), Positives = 111/275 (40%), Gaps = 57/275 (20%)

Query: 85  VWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWG 144
           +  WG  +  QLG G ++      +P++ +      V         +  + DDG+++  G
Sbjct: 1   MLCWGNASYGQLGLGGIDEEIVL-EPRKSDFFVNKKVRDVGCGLRHTVFVLDDGTVYTCG 59

Query: 145 KSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRI 204
            +  GQLG  K   +   P +V AL  + IV VS G  H LA  + G+++ WG  +DG++
Sbjct: 60  CNDLGQLGHEKSRKK---PEQVVALDAQNIVAVSCGEAHTLALNDKGQVYAWGLDSDGQL 116

Query: 205 GNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGV 264
           G  G   E   +  NI   S+                                      +
Sbjct: 117 GLQGSE-ECIRVPRNIKSLSD--------------------------------------I 137

Query: 265 EVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLG-----REKQDMGMFPVDINFHPVSISS 319
           ++V +ACG+ HSL L +   +   G N YGQLG     +++    +    +    + +++
Sbjct: 138 QIVQVACGYYHSLALSKASEVFCWGQNKYGQLGLGIECQKQTSPQLIKSLLGIPFMQVAA 197

Query: 320 GLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLG 354
           G  HS  +          GA  I  WG N+  QLG
Sbjct: 198 GGAHSFVL-------TLSGA--IFGWGRNKFGQLG 223


>gi|58865718|ref|NP_001012074.1| probable E3 ubiquitin-protein ligase HERC4 [Rattus norvegicus]
 gi|81883244|sp|Q5PQN1.1|HERC4_RAT RecName: Full=Probable E3 ubiquitin-protein ligase HERC4; AltName:
           Full=HECT domain and RCC1-like domain-containing protein
           4
 gi|56269464|gb|AAH87104.1| Hect domain and RLD 4 [Rattus norvegicus]
          Length = 1057

 Score = 90.9 bits (224), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 63/245 (25%), Positives = 113/245 (46%), Gaps = 43/245 (17%)

Query: 55  EPTRVPGLPS-DVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRV 113
           +P +V  L + ++ +VS G  H+LA+ + G V+AWG +++ QLG     S      P+ +
Sbjct: 74  KPEQVVALDAQNIVAVSCGEAHTLALNDKGQVYAWGLDSDGQLGLQG--SEECIRVPRNI 131

Query: 114 EGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEK 173
           + L  + +         S A+     ++ WG++K GQLGLG +  +   P  +++L G  
Sbjct: 132 KSLSDIQIVQVACGYYHSLALSKASEVFCWGQNKYGQLGLGIECQKQTSPQLIKSLLGIP 191

Query: 174 IVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSS 233
            ++V+ G  H+   T  G +FGWG +  G++G          L+                
Sbjct: 192 FMQVAAGGAHSFVLTLSGAIFGWGRNKFGQLG----------LND--------------- 226

Query: 234 TIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVY 293
                        E ++Y+P + +   +   ++V I CG DH+  L + G + + G+  Y
Sbjct: 227 -------------ENDRYVPNLLKS--LRSQKIVYICCGEDHTAALTKEGGVFTFGAGGY 271

Query: 294 GQLGR 298
           GQLG 
Sbjct: 272 GQLGH 276



 Score = 81.3 bits (199), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 58/188 (30%), Positives = 96/188 (51%), Gaps = 8/188 (4%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPS-DVTSVSAGHYHSLAVTNNGAVWA 87
           V ++G  S G LGL  S   +      P  +  L    +  V+ G+YHSLA++    V+ 
Sbjct: 105 VYAWGLDSDGQLGLQGSEECIR----VPRNIKSLSDIQIVQVACGYYHSLALSKASEVFC 160

Query: 88  WGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSK 147
           WG+N   QLG G    + T   P+ ++ L  +      A G  S  +   G+++ WG++K
Sbjct: 161 WGQNKYGQLGLGIECQKQT--SPQLIKSLLGIPFMQVAAGGAHSFVLTLSGAIFGWGRNK 218

Query: 148 RGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNL 207
            GQLGL  D  +  VP+ +++L  +KIV +  G  H  A T++G +F +G    G++G+ 
Sbjct: 219 FGQLGLN-DENDRYVPNLLKSLRSQKIVYICCGEDHTAALTKEGGVFTFGAGGYGQLGHN 277

Query: 208 GKALESSP 215
             + E +P
Sbjct: 278 STSHEINP 285



 Score = 68.9 bits (167), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 67/275 (24%), Positives = 111/275 (40%), Gaps = 57/275 (20%)

Query: 85  VWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWG 144
           +  WG  +  QLG G ++      +P++ +      V         +  + DDG+++  G
Sbjct: 1   MLCWGNASYGQLGLGGIDEEIVL-EPRKSDFFVNKKVRDVGCGLRHTVFVLDDGTVYTCG 59

Query: 145 KSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRI 204
            +  GQLG  K   +   P +V AL  + IV VS G  H LA  + G+++ WG  +DG++
Sbjct: 60  CNDLGQLGHEKSRKK---PEQVVALDAQNIVAVSCGEAHTLALNDKGQVYAWGLDSDGQL 116

Query: 205 GNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGV 264
           G  G   E   +  NI   S+                                      +
Sbjct: 117 GLQGSE-ECIRVPRNIKSLSD--------------------------------------I 137

Query: 265 EVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLG-----REKQDMGMFPVDINFHPVSISS 319
           ++V +ACG+ HSL L +   +   G N YGQLG     +++    +    +    + +++
Sbjct: 138 QIVQVACGYYHSLALSKASEVFCWGQNKYGQLGLGIECQKQTSPQLIKSLLGIPFMQVAA 197

Query: 320 GLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLG 354
           G  HS  +          GA  I  WG N+  QLG
Sbjct: 198 GGAHSFVL-------TLSGA--IFGWGRNKFGQLG 223


>gi|151556979|gb|AAI49505.1| RCC2 protein [Bos taurus]
 gi|296489973|tpg|DAA32086.1| TPA: regulator of chromosome condensation 2 [Bos taurus]
          Length = 402

 Score = 90.9 bits (224), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 75/262 (28%), Positives = 120/262 (45%), Gaps = 26/262 (9%)

Query: 75  HSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAI 134
           HSL +T  G +W+WGRN + QLG G  +       P+ VEGL    + +A      + A+
Sbjct: 159 HSLLITTEGKLWSWGRNEKGQLGHGDTKR---VEAPRLVEGLSHEVIVSAACGRNHTLAL 215

Query: 135 GDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLF 194
            + GS++ +G++K GQLGLG        P+++    G+ I K++ G   ++     G L+
Sbjct: 216 TETGSVFAFGENKMGQLGLGNQTDAVPSPAQI-MYNGQPITKMACGAEFSMIMDCKGNLY 274

Query: 195 GWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPI 254
            +G    G++G+            N D    +  +      E   + V+  +EK K   I
Sbjct: 275 SFGCPEYGQLGH------------NSDGKFIARAQRIEYDCELVPRRVAIFIEKTKDGQI 322

Query: 255 IWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFHP 314
           +  P +V    V D+ACG +H+LVL     + S G   YG+LG  +Q   M P  +    
Sbjct: 323 LPVPNVV----VRDVACGANHTLVLDSQKRVFSWGFGGYGRLGHAEQKDEMVPRLVKLFD 378

Query: 315 V------SISSGLGHSLAICEV 330
                   I +G   S A+ EV
Sbjct: 379 FPGRGASQIYAGYTCSFAVSEV 400



 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 57/186 (30%), Positives = 80/186 (43%), Gaps = 31/186 (16%)

Query: 56  PTRVPGLPSDV-TSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVE 114
           P  V GL  +V  S + G  H+LA+T  G+V+A+G N   QLG G      T   P   +
Sbjct: 191 PRLVEGLSHEVIVSAACGRNHTLALTETGSVFAFGENKMGQLGLG----NQTDAVPSPAQ 246

Query: 115 GLDQVNVCAAFASGVVSSAIGD-DGSLWVWGKSKRGQLGL---GKDITEA--------IV 162
            +         A G   S I D  G+L+ +G  + GQLG    GK I  A        +V
Sbjct: 247 IMYNGQPITKMACGAEFSMIMDCKGNLYSFGCPEYGQLGHNSDGKFIARAQRIEYDCELV 306

Query: 163 PSRVEALAGEK-------------IVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGK 209
           P RV A+  EK             +  V+ G  H L      ++F WG+   GR+G+  +
Sbjct: 307 PRRV-AIFIEKTKDGQILPVPNVVVRDVACGANHTLVLDSQKRVFSWGFGGYGRLGHAEQ 365

Query: 210 ALESSP 215
             E  P
Sbjct: 366 KDEMVP 371


>gi|301117544|ref|XP_002906500.1| regulator of chromosome condensation (RCC1)-like protein
           [Phytophthora infestans T30-4]
 gi|262107849|gb|EEY65901.1| regulator of chromosome condensation (RCC1)-like protein
           [Phytophthora infestans T30-4]
          Length = 4048

 Score = 90.9 bits (224), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 80/305 (26%), Positives = 148/305 (48%), Gaps = 55/305 (18%)

Query: 56  PTR-VPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVE 114
           P R + G+   + + + G  H LAV ++GAV++WG N+  QLG G+  S++  + P+ ++
Sbjct: 543 PVRALSGIAISMVAAANGCEHMLAVASDGAVFSWGYNDRGQLGLGSTISKS--HTPRMID 600

Query: 115 GL-DQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEK 173
            L ++ ++  A  S   S+ +  +G L  +G +  GQLGL         P  V+AL+ + 
Sbjct: 601 SLREKYHITTAAVSYHHSAVVSSNGELLTFGMNDCGQLGLDH-TQHQHTPQVVDALSSQV 659

Query: 174 IVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSS 233
           + K + G  H +A T DG+++ +G +  G++G LG A           R+ ++   + +S
Sbjct: 660 VTKAACGLYHTVAATSDGEVYSFGKNDYGQLG-LGHA-----------RNIKTPALVKTS 707

Query: 234 TIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVY 293
             E  +K+V+                         ++CG+ H++ +   G L++ G N Y
Sbjct: 708 LGESDEKIVA-------------------------VSCGYYHTVTISEKGKLITWGRNDY 742

Query: 294 GQLG---REKQDMGMF-PVDINFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNR 349
           GQLG   +E ++   F P+ ++    + S G  HSL +       ++ G   ++ +G N 
Sbjct: 743 GQLGIGSKEHKNSAQFVPLPMSSKIKNASCGCYHSLIL-------MSNGR--VMVFGRNN 793

Query: 350 SSQLG 354
             QLG
Sbjct: 794 KGQLG 798



 Score = 62.0 bits (149), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 52/196 (26%), Positives = 96/196 (48%), Gaps = 23/196 (11%)

Query: 4   LKSVVHNH----VNVLTSRIFMRSASGT----------AVVSFGDGSQGALGLPTSLTGV 49
           L    H H    V+ L+S++  ++A G            V SFG    G LGL  +   +
Sbjct: 640 LDHTQHQHTPQVVDALSSQVVTKAACGLYHTVAATSDGEVYSFGKNDYGQLGLGHA-RNI 698

Query: 50  GGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWND 109
              A   T +      + +VS G+YH++ ++  G +  WGRN+  QLG G+ E + +   
Sbjct: 699 KTPALVKTSLGESDEKIVAVSCGYYHTVTISEKGKLITWGRNDYGQLGIGSKEHKNSAQF 758

Query: 110 -PKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLG-KDITEAIVPSRV- 166
            P  +    +   C  + S ++ S    +G + V+G++ +GQLG G + ++ A +P  V 
Sbjct: 759 VPLPMSSKIKNASCGCYHSLILMS----NGRVMVFGRNNKGQLGAGARTLSSADLPLPVP 814

Query: 167 -EALAGEKIVKVSFGW 181
             +LA +++V+++ G+
Sbjct: 815 SNSLANDEVVRIAAGF 830


>gi|158286478|ref|XP_001688080.1| AGAP006994-PB [Anopheles gambiae str. PEST]
 gi|157020487|gb|EDO64729.1| AGAP006994-PB [Anopheles gambiae str. PEST]
          Length = 1060

 Score = 90.9 bits (224), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 79/307 (25%), Positives = 128/307 (41%), Gaps = 54/307 (17%)

Query: 66  VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAF 125
           +T +S G  HSLA+TN G V++WG N   QLG  A   R     P+ ++ +   +V    
Sbjct: 96  ITCISCGTAHSLALTNWGQVFSWGSNAVGQLGHDAENGRQP--TPRMIKAIGAKHVVQIA 153

Query: 126 ASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHAL 185
           +      A+ ++G L+ WG +  GQLG+G    +  +P+ +++LAG  I  ++ G  H+ 
Sbjct: 154 SGQYHCLALTNNGELYAWGSNSYGQLGIGTTSEKVPMPTLIQSLAGVPIAFIACGGNHSF 213

Query: 186 AQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEG 245
           A ++ G +FGWG +  G++G         P      RS                      
Sbjct: 214 AVSKSGAIFGWGKNTFGQLGLNDLNSRCYPTQLRTLRS---------------------- 251

Query: 246 MEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGM 305
                             + V  I+CG D S+ L   G + +CG+  +GQLG       +
Sbjct: 252 ------------------LGVRYISCGDDFSVFLTNEGGVFTCGAGTFGQLGHGSCSNEI 293

Query: 306 FPVDINFHPV-----SISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPDN 360
            P  + F  +      I+ G  H+LA    R      G  G+   G      +G +G  +
Sbjct: 294 VPRKV-FELMGSKITQIACGRRHTLAFVPSRGKIYGFGLGGVGQLG------IGMVGNHS 346

Query: 361 VPLVVEG 367
            P +V G
Sbjct: 347 TPQIVRG 353



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 71/291 (24%), Positives = 120/291 (41%), Gaps = 54/291 (18%)

Query: 28  AVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVP-----GLPSDVTSVSAGHYHSLAVTNN 82
           A+  +G+ + G LGL       GG   E   VP         +V  V  G  H+L +T  
Sbjct: 2   AIYCWGNTAHGELGL-------GGIEEEQVMVPRKMDWSQADEVVRVECGTSHTLFLTKE 54

Query: 83  GAVWAWGRNNEVQLGRGA---LESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGS 139
           G ++A G N+  QLG         R   +  KR+  L+   +         S A+ + G 
Sbjct: 55  GKMYACGNNDHGQLGHDLDTLPNKRPRMSRFKRLTSLENYIITCISCGTAHSLALTNWGQ 114

Query: 140 LWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYS 199
           ++ WG +  GQLG   +      P  ++A+  + +V+++ G  H LA T +G+L+ WG +
Sbjct: 115 VFSWGSNAVGQLGHDAENGRQPTPRMIKAIGAKHVVQIASGQYHCLALTNNGELYAWGSN 174

Query: 200 ADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPF 259
           + G++G +G   E  P+ + I                                       
Sbjct: 175 SYGQLG-IGTTSEKVPMPTLIQS------------------------------------- 196

Query: 260 LVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDI 310
            + GV +  IACG +HS  + ++G +   G N +GQLG    +   +P  +
Sbjct: 197 -LAGVPIAFIACGGNHSFAVSKSGAIFGWGKNTFGQLGLNDLNSRCYPTQL 246



 Score = 72.4 bits (176), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 68/246 (27%), Positives = 114/246 (46%), Gaps = 15/246 (6%)

Query: 2   RLLKSVVHNHVNVLTSRIF--MRSASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRV 59
           R++K++   HV  + S  +  +   +   + ++G  S G LG+ T+   V      PT +
Sbjct: 139 RMIKAIGAKHVVQIASGQYHCLALTNNGELYAWGSNSYGQLGIGTTSEKVP----MPTLI 194

Query: 60  PGLPS-DVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQ 118
             L    +  ++ G  HS AV+ +GA++ WG+N   QLG   L SR     P ++  L  
Sbjct: 195 QSLAGVPIAFIACGGNHSFAVSKSGAIFGWGKNTFGQLGLNDLNSRCY---PTQLRTLRS 251

Query: 119 VNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVS 178
           + V         S  + ++G ++  G    GQLG G   +  IVP +V  L G KI +++
Sbjct: 252 LGVRYISCGDDFSVFLTNEGGVFTCGAGTFGQLGHG-SCSNEIVPRKVFELMGSKITQIA 310

Query: 179 FGWGHALAQTED-GKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEK 237
            G  H LA     GK++G+G    G +G LG  +  +     I R      +  SS  ++
Sbjct: 311 CGRRHTLAFVPSRGKIYGFGL---GGVGQLGIGMVGNHSTPQIVRGPWFKTDFKSSDCDE 367

Query: 238 AQKLVS 243
            Q +V+
Sbjct: 368 TQIIVN 373



 Score = 61.2 bits (147), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 58/223 (26%), Positives = 99/223 (44%), Gaps = 51/223 (22%)

Query: 139 SLWVWGKSKRGQLGLG-KDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWG 197
           +++ WG +  G+LGLG  +  + +VP +++    +++V+V  G  H L  T++GK++  G
Sbjct: 2   AIYCWGNTAHGELGLGGIEEEQVMVPRKMDWSQADEVVRVECGTSHTLFLTKEGKMYACG 61

Query: 198 YSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWE 257
            +  G++G+         LD+  ++            + + ++L S              
Sbjct: 62  NNDHGQLGH--------DLDTLPNKRPR---------MSRFKRLTS-------------- 90

Query: 258 PFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINF----- 312
              +E   +  I+CG  HSL L   G + S GSN  GQLG + ++ G  P          
Sbjct: 91  ---LENYIITCISCGTAHSLALTNWGQVFSWGSNAVGQLGHDAEN-GRQPTPRMIKAIGA 146

Query: 313 -HPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLG 354
            H V I+SG  H LA+          G   + +WG N   QLG
Sbjct: 147 KHVVQIASGQYHCLAL-------TNNGE--LYAWGSNSYGQLG 180



 Score = 45.8 bits (107), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 34/101 (33%), Positives = 47/101 (46%), Gaps = 19/101 (18%)

Query: 265 EVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGRE-------KQDMGMFPVDI---NFHP 314
           EVV + CG  H+L L + G + +CG+N +GQLG +       +  M  F       N+  
Sbjct: 37  EVVRVECGTSHTLFLTKEGKMYACGNNDHGQLGHDLDTLPNKRPRMSRFKRLTSLENYII 96

Query: 315 VSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGR 355
             IS G  HSLA+        T   + + SWG N   QLG 
Sbjct: 97  TCISCGTAHSLAL--------TNWGQ-VFSWGSNAVGQLGH 128


>gi|298714154|emb|CBJ33856.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 669

 Score = 90.9 bits (224), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 92/305 (30%), Positives = 132/305 (43%), Gaps = 57/305 (18%)

Query: 20  FMRSASGTA---VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHS 76
           F  +A+ TA   + ++G G  G LGL     G   D + P+RV GL S V  V AG  HS
Sbjct: 332 FAYTAAVTASGELYTWGAGENGRLGL-----GDVADRHTPSRVEGLHSKVKEVYAGSVHS 386

Query: 77  LAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLD-----QVNVCAAFASGVVS 131
             +T  G V+A+G++     G G  E      DP+ +          V   +    G  +
Sbjct: 387 CVLTREGTVYAFGKHEYT--GHGDHEDVL---DPRLIPTFSGGSGALVRQISVGPGGYHT 441

Query: 132 SAIGDDGSLWVWGKSKRGQLGLGKDIT-------EAIVPSR--VEALAGEKIVKVSFGWG 182
            A+   G ++ WG ++  QLG+G   T          +PS   VE+L G  IVKV  GWG
Sbjct: 442 MALTCQGQVYAWGHNRVAQLGIGNSFTVPRNMEGAYFLPSPQLVESLVGMNIVKVVAGWG 501

Query: 183 HALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLV 242
           H+ A T DG+L+  G +  G++G LG     SP     +      Q      I++ Q L 
Sbjct: 502 HSAALTVDGQLYVCGRNYQGQLG-LG-----SPQGFPQNERGHPFQ-ADFCLIDRLQHL- 553

Query: 243 SEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQD 302
                                 ++  IACG +HS+ +  NG + S G+   GQLG E   
Sbjct: 554 ----------------------KIKQIACGGEHSVAVAENGEVWSFGAGQKGQLGHESTT 591

Query: 303 MGMFP 307
              FP
Sbjct: 592 REDFP 596



 Score = 62.8 bits (151), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 71/274 (25%), Positives = 115/274 (41%), Gaps = 68/274 (24%)

Query: 107 WND--PKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLG-KDITEAIVP 163
           W+D  P  V+GL  ++V      G  ++ + D G ++ WG+   G+LG G ++  E+  P
Sbjct: 257 WSDVSPVVVQGLLGLSVQQVCCGGQHAAVLTDCGEIFTWGRGGFGRLGHGNREGLES--P 314

Query: 164 SRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRS 223
            R+EAL G   V+V+ G+ +  A T  G+L+ WG   +GR+G          L    DR 
Sbjct: 315 RRIEALEGIPCVQVACGFAYTAAVTASGELYTWGAGENGRLG----------LGDVADRH 364

Query: 224 SESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGV--EVVDIACGFDHSLVLGR 281
           +                                 P  VEG+  +V ++  G  HS VL R
Sbjct: 365 T---------------------------------PSRVEGLHSKVKEVYAGSVHSCVLTR 391

Query: 282 NGVLLSCGSNVYGQLGREKQ--DMGMFPV-----DINFHPVSISSGLGHSLAI-CEVRSS 333
            G + + G + Y   G  +   D  + P            +S+  G  H++A+ C+ +  
Sbjct: 392 EGTVYAFGKHEYTGHGDHEDVLDPRLIPTFSGGSGALVRQISVGPGGYHTMALTCQGQ-- 449

Query: 334 NVTGGARGIVSWGWNRSSQLGRMGPDNVPLVVEG 367
                   + +WG NR +QLG      VP  +EG
Sbjct: 450 --------VYAWGHNRVAQLGIGNSFTVPRNMEG 475



 Score = 44.3 bits (103), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 35/125 (28%), Positives = 60/125 (48%), Gaps = 10/125 (8%)

Query: 65  DVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALES-------RATWNDPKRVEGLD 117
           ++  V AG  HS A+T +G ++  GRN + QLG G+ +             D   ++ L 
Sbjct: 492 NIVKVVAGWGHSAALTVDGQLYVCGRNYQGQLGLGSPQGFPQNERGHPFQADFCLIDRLQ 551

Query: 118 QVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEK--IV 175
            + +      G  S A+ ++G +W +G  ++GQLG  +  T    P  V+AL   +  I+
Sbjct: 552 HLKIKQIACGGEHSVAVAENGEVWSFGAGQKGQLGH-ESTTREDFPRLVQALKSTRREIM 610

Query: 176 KVSFG 180
            V+ G
Sbjct: 611 HVACG 615


>gi|348533602|ref|XP_003454294.1| PREDICTED: protein RCC2 homolog [Oreochromis niloticus]
          Length = 494

 Score = 90.9 bits (224), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 77/287 (26%), Positives = 129/287 (44%), Gaps = 23/287 (8%)

Query: 75  HSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAI 134
           HSL +T  G +W+WGRN++ QLG G  +       PK +E L +  + +       + A+
Sbjct: 133 HSLFITTEGKLWSWGRNDKGQLGHGDTKRLEA---PKLIEALAEHVIVSVACGRNHTLAL 189

Query: 135 GDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLF 194
            +DG+++ +G++K GQLG G      + P+ + +  G+ +VKV+ G   ++     G L+
Sbjct: 190 TEDGAVYSFGENKLGQLGQGNQTDAVLTPALI-SYNGQPLVKVACGAEFSMVVDCKGNLY 248

Query: 195 GWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPI 254
            +G    G++G+            N D    +  +      E   + V+  +EK K   I
Sbjct: 249 SFGCPEYGQLGH------------NSDGKFIARAQRIEFDCELIPRRVAIFIEKSKDGQI 296

Query: 255 IWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFHP 314
           +  P +V    V D+ACG +H+LVL     + + G   YG+LG  +Q   M P  +    
Sbjct: 297 MPVPNVV----VRDVACGANHTLVLDSQKRVFTWGFGGYGRLGHTEQKDEMVPRLVKLFD 352

Query: 315 VSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPDNV 361
                G G S      + S       G+  WG   +S+   M P  V
Sbjct: 353 F---PGRGASQIYAGYQCSFAVSEMGGLFFWGVTNTSRESTMYPKAV 396



 Score = 54.3 bits (129), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 53/175 (30%), Positives = 77/175 (44%), Gaps = 30/175 (17%)

Query: 66  VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNV-CAA 124
           + SV+ G  H+LA+T +GAV+++G N   QLG+G               G   V V C A
Sbjct: 176 IVSVACGRNHTLALTEDGAVYSFGENKLGQLGQGNQTDAVLTPALISYNGQPLVKVACGA 235

Query: 125 FASGVVSSAIGDDGSLWVWGKSKRGQLGL---GKDITEA--------IVPSRVEALAGEK 173
             S VV       G+L+ +G  + GQLG    GK I  A        ++P RV A+  EK
Sbjct: 236 EFSMVVDCK----GNLYSFGCPEYGQLGHNSDGKFIARAQRIEFDCELIPRRV-AIFIEK 290

Query: 174 -------------IVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSP 215
                        +  V+ G  H L      ++F WG+   GR+G+  +  E  P
Sbjct: 291 SKDGQIMPVPNVVVRDVACGANHTLVLDSQKRVFTWGFGGYGRLGHTEQKDEMVP 345


>gi|282163157|ref|YP_003355542.1| hypothetical protein MCP_0487 [Methanocella paludicola SANAE]
 gi|282155471|dbj|BAI60559.1| conserved hypothetical protein [Methanocella paludicola SANAE]
          Length = 444

 Score = 90.9 bits (224), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 94/326 (28%), Positives = 142/326 (43%), Gaps = 59/326 (18%)

Query: 64  SDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWND---PKRVEGLDQVN 120
           S V  ++AG+ H LA+  +G VWAWG N   QLG G      T+ND   P +V GL  V 
Sbjct: 71  SVVRKIAAGYGHVLALKGDGTVWAWGSNKYGQLGDG------TYNDSAGPVQVAGLTGVK 124

Query: 121 VCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGK-DITEAIVPSRVEALAGEKIVKVSF 179
             AA     +S A+  DG++W WG +  GQ+G G  +     VP +V+ L    I  +S 
Sbjct: 125 AIAAGKD--ISLALKGDGTVWAWGSNSYGQVGEGSLNYKGTAVPIQVKGL--NNIQAISA 180

Query: 180 GWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQ----------- 228
           G  H LA   DG ++ WG +  G +G+       +P+ S I      D            
Sbjct: 181 GGSHCLASQGDGAVWAWGDNRHGVLGDGTNESRFTPVRSKIYNVMGLDAGDAHALAVMVD 240

Query: 229 --------------EISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVE-VVDIACGF 273
                          +  +++    +L S G E + +      P +V G+  V  +A G 
Sbjct: 241 GNVWSWGYNYNGQLGMGGTSLNDLGRL-SFGPEADSF-----NPDIVRGLSGVKSVAVGA 294

Query: 274 DHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFHPV----SISSGLGHSLAICE 329
            HS+ L  NG + + GSN  GQLG  K       V +    +    ++ +GL H+LA+ +
Sbjct: 295 SHSVALADNGTVWTWGSNSDGQLGVGKTGGSDMTVPVRVSGINGITAVDAGLYHTLALKD 354

Query: 330 VRSSNVTGGARGIVSWGWNRSSQLGR 355
             S         + +WG N   Q+G 
Sbjct: 355 DGS---------VWAWGSNAEGQVGN 371



 Score = 87.8 bits (216), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 81/299 (27%), Positives = 140/299 (46%), Gaps = 36/299 (12%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAW 88
           V ++G    G LG      G   D+  P +V GL + V +++AG   SLA+  +G VWAW
Sbjct: 92  VWAWGSNKYGQLG-----DGTYNDSAGPVQVAGL-TGVKAIAAGKDISLALKGDGTVWAW 145

Query: 89  GRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKR 148
           G N+  Q+G G+L  + T   P +V+GL+ +   +A  S  ++S    DG++W WG ++ 
Sbjct: 146 GSNSYGQVGEGSLNYKGT-AVPIQVKGLNNIQAISAGGSHCLASQ--GDGAVWAWGDNRH 202

Query: 149 GQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLG 208
           G LG G + +    P R +      ++ +  G  HALA   DG ++ WGY+ +G++G  G
Sbjct: 203 GVLGDGTNESR-FTPVRSKIY---NVMGLDAGDAHALAVMVDGNVWSWGYNYNGQLGMGG 258

Query: 209 KAL----------ESSPLDSNIDRSSESDQEIS-----SSTIEKAQKLVSEGMEKEKYMP 253
            +L          E+   + +I R     + ++     S  +     + + G   +  + 
Sbjct: 259 TSLNDLGRLSFGPEADSFNPDIVRGLSGVKSVAVGASHSVALADNGTVWTWGSNSDGQLG 318

Query: 254 I-------IWEPFLVEGVE-VVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMG 304
           +       +  P  V G+  +  +  G  H+L L  +G + + GSN  GQ+G      G
Sbjct: 319 VGKTGGSDMTVPVRVSGINGITAVDAGLYHTLALKDDGSVWAWGSNAEGQVGNRSASAG 377



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 68/190 (35%), Positives = 94/190 (49%), Gaps = 22/190 (11%)

Query: 28  AVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWA 87
           AV ++GD   G LG      G     + P R      +V  + AG  H+LAV  +G VW+
Sbjct: 193 AVWAWGDNRHGVLG-----DGTNESRFTPVRSK--IYNVMGLDAGDAHALAVMVDGNVWS 245

Query: 88  WGRNNEVQLGRG----------ALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDD 137
           WG N   QLG G          +    A   +P  V GL  V   A  AS  V  A+ D+
Sbjct: 246 WGYNYNGQLGMGGTSLNDLGRLSFGPEADSFNPDIVRGLSGVKSVAVGASHSV--ALADN 303

Query: 138 GSLWVWGKSKRGQLGLGKD-ITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGW 196
           G++W WG +  GQLG+GK   ++  VP RV  + G  I  V  G  H LA  +DG ++ W
Sbjct: 304 GTVWTWGSNSDGQLGVGKTGGSDMTVPVRVSGING--ITAVDAGLYHTLALKDDGSVWAW 361

Query: 197 GYSADGRIGN 206
           G +A+G++GN
Sbjct: 362 GSNAEGQVGN 371



 Score = 68.2 bits (165), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 89/331 (26%), Positives = 149/331 (45%), Gaps = 49/331 (14%)

Query: 66  VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAF 125
           V S++A +  S+A+ ++G VW WG           +     +  P++VE    ++V    
Sbjct: 31  VVSIAASNSTSVALLDDGTVWQWGY----------VSDGVEYATPQKVE----ISVVRKI 76

Query: 126 ASGVVSS-AIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHA 184
           A+G     A+  DG++W WG +K GQLG G    ++  P +V  L G K   ++ G   +
Sbjct: 77  AAGYGHVLALKGDGTVWAWGSNKYGQLGDGT-YNDSAGPVQVAGLTGVK--AIAAGKDIS 133

Query: 185 LAQTEDGKLFGWGYSADGRI--GNLGKALESSPLD----SNIDRSSESDQEISSSTIEKA 238
           LA   DG ++ WG ++ G++  G+L     + P+     +NI   S       +S  + A
Sbjct: 134 LALKGDGTVWAWGSNSYGQVGEGSLNYKGTAVPIQVKGLNNIQAISAGGSHCLASQGDGA 193

Query: 239 --------QKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGS 290
                     ++ +G  + ++ P+  + + V G++  D      H+L +  +G + S G 
Sbjct: 194 VWAWGDNRHGVLGDGTNESRFTPVRSKIYNVMGLDAGDA-----HALAVMVDGNVWSWGY 248

Query: 291 NVYGQL---GREKQDMGMF---PVDINFHPVSISSGLGHSLAICEVRSSNVTGGARGIV- 343
           N  GQL   G    D+G     P   +F+P  I  GL    ++    S +V     G V 
Sbjct: 249 NYNGQLGMGGTSLNDLGRLSFGPEADSFNP-DIVRGLSGVKSVAVGASHSVALADNGTVW 307

Query: 344 SWGWNRSSQLG---RMGPD-NVPLVVEGLEG 370
           +WG N   QLG     G D  VP+ V G+ G
Sbjct: 308 TWGSNSDGQLGVGKTGGSDMTVPVRVSGING 338


>gi|383852591|ref|XP_003701810.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC4-like
           [Megachile rotundata]
          Length = 1135

 Score = 90.9 bits (224), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 85/317 (26%), Positives = 137/317 (43%), Gaps = 59/317 (18%)

Query: 59  VPGLPSDV-TSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLD 117
           +PGL + V   V+ G +H+LAV   G +++WG N E QLG  +         P  V  L 
Sbjct: 155 IPGLDAFVFKKVACGAHHTLAVNEWGQLFSWGSNAEGQLGLNS--KNLIECVPHMVRALG 212

Query: 118 QVNVCAAFASGVVSS-AIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVK 176
             +V    A G+    A+ ++G L+ WG +  GQLGLG D+   I P  + +LAG  I  
Sbjct: 213 -TSVVVQVACGINHVLALTNNGKLYSWGSNSDGQLGLGTDVKNEIKPKLISSLAGVPIAF 271

Query: 177 VSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIE 236
           ++ G  H++A ++ G +FGWG +  G++G       +   + N+ R  ++          
Sbjct: 272 ITCGGYHSMAISKSGAVFGWGKNTFGQLG------LNDTRNRNLPRQLQT---------- 315

Query: 237 KAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQL 296
                                   ++  +V   ACG + S+ L  +G + +CG+ +YGQL
Sbjct: 316 ------------------------LQNAKVCYAACGEEFSVFLTVDGGVFTCGAGMYGQL 351

Query: 297 GREKQDMGMFPVDI----NFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQ 352
           G       + P  +          IS G  H+L +   R          + +WG   + Q
Sbjct: 352 GHGNTSNEILPRQVMELMGSTVTQISCGKRHTLGLVPSRGR--------VYAWGLGGAGQ 403

Query: 353 LGRMGPDNV--PLVVEG 367
           LG     +V  P VV G
Sbjct: 404 LGNNITRSVATPQVVHG 420



 Score = 85.5 bits (210), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 74/257 (28%), Positives = 118/257 (45%), Gaps = 53/257 (20%)

Query: 48  GVGGDAYEPTRVP-----GLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALE 102
           G+GG   E   VP        +++  ++ G  +++ +T +G V++ G N+  QLG     
Sbjct: 90  GLGGIEDENILVPRELDFQKATEIEQIACGENYTVLITRDGQVYSCGNNDYGQLGHEKGR 149

Query: 103 SRATWNDPKRVEGLDQVNVCAAFASGVVSS-AIGDDGSLWVWGKSKRGQLGLG-KDITEA 160
            R      + + GLD   V    A G   + A+ + G L+ WG +  GQLGL  K++ E 
Sbjct: 150 KRL-----QLIPGLDAF-VFKKVACGAHHTLAVNEWGQLFSWGSNAEGQLGLNSKNLIEC 203

Query: 161 IVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNI 220
            VP  V AL    +V+V+ G  H LA T +GKL+ WG ++DG++G LG  +++       
Sbjct: 204 -VPHMVRALGTSVVVQVACGINHVLALTNNGKLYSWGSNSDGQLG-LGTDVKN------- 254

Query: 221 DRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLG 280
                          E   KL+S                 + GV +  I CG  HS+ + 
Sbjct: 255 ---------------EIKPKLISS----------------LAGVPIAFITCGGYHSMAIS 283

Query: 281 RNGVLLSCGSNVYGQLG 297
           ++G +   G N +GQLG
Sbjct: 284 KSGAVFGWGKNTFGQLG 300



 Score = 82.8 bits (203), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 61/199 (30%), Positives = 95/199 (47%), Gaps = 18/199 (9%)

Query: 10  NHVNVLTSRIFMRSASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLP-SDVTS 68
           NHV  LT+           + S+G  S G LGL T +     +  +P  +  L    +  
Sbjct: 224 NHVLALTN--------NGKLYSWGSNSDGQLGLGTDVK----NEIKPKLISSLAGVPIAF 271

Query: 69  VSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASG 128
           ++ G YHS+A++ +GAV+ WG+N   QLG     +R   N P++++ L    VC A    
Sbjct: 272 ITCGGYHSMAISKSGAVFGWGKNTFGQLGLNDTRNR---NLPRQLQTLQNAKVCYAACGE 328

Query: 129 VVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQT 188
             S  +  DG ++  G    GQLG G    E I+P +V  L G  + ++S G  H L   
Sbjct: 329 EFSVFLTVDGGVFTCGAGMYGQLGHGNTSNE-ILPRQVMELMGSTVTQISCGKRHTLGLV 387

Query: 189 ED-GKLFGWGYSADGRIGN 206
              G+++ WG    G++GN
Sbjct: 388 PSRGRVYAWGLGGAGQLGN 406



 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 69/233 (29%), Positives = 104/233 (44%), Gaps = 22/233 (9%)

Query: 137 DGSLWVWGKSKRGQLGLGKDITEAI-VPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFG 195
           D +++ WG +  G+LGLG    E I VP  ++     +I +++ G  + +  T DG+++ 
Sbjct: 75  DKNMFCWGSTIHGELGLGGIEDENILVPRELDFQKATEIEQIACGENYTVLITRDGQVYS 134

Query: 196 WGYSADGRIGNLG--KALESSP-LDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYM 252
            G +  G++G+    K L+  P LD+ + +        + +  E  Q L S G   E  +
Sbjct: 135 CGNNDYGQLGHEKGRKRLQLIPGLDAFVFKKVACGAHHTLAVNEWGQ-LFSWGSNAEGQL 193

Query: 253 ------PIIWEPFLVEGV---EVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDM 303
                  I   P +V  +    VV +ACG +H L L  NG L S GSN  GQLG     +
Sbjct: 194 GLNSKNLIECVPHMVRALGTSVVVQVACGINHVLALTNNGKLYSWGSNSDGQLG-----L 248

Query: 304 GMFPVDINFHPVSISSGLGHSLAI--CEVRSSNVTGGARGIVSWGWNRSSQLG 354
           G   V     P  ISS  G  +A   C    S     +  +  WG N   QLG
Sbjct: 249 GT-DVKNEIKPKLISSLAGVPIAFITCGGYHSMAISKSGAVFGWGKNTFGQLG 300


>gi|322795632|gb|EFZ18311.1| hypothetical protein SINV_02346 [Solenopsis invicta]
          Length = 3628

 Score = 90.9 bits (224), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 101/372 (27%), Positives = 167/372 (44%), Gaps = 51/372 (13%)

Query: 19   IFMRSASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDV---TSVSAGHYH 75
            +F+ S  G  + + G+G+ G LGL     G   +  EP  +P L   V    +V +G  H
Sbjct: 2634 LFIVSQEG-KLYACGEGTNGRLGL-----GDDNNVCEPKAIPFLSQFVIKKVAVHSGGKH 2687

Query: 76   SLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIG 135
            +LA+T +G V++WG   + +LG G   S    + PK +E L    +         S+AI 
Sbjct: 2688 ALALTQDGKVFSWGEGEDGKLGHGNCIS---LDKPKLIEILKSKRIRDIACGSGHSAAIA 2744

Query: 136  DDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGW--GHALAQTEDGKL 193
             +G L+ WG  + G+LG G  IT+   P  V+AL G+++V+V+ G      +A T DG +
Sbjct: 2745 SNGELYTWGLGEYGRLGHGDTITQT-RPKLVQALVGQRVVQVACGSRDAQTMALTTDGCV 2803

Query: 194  FGWGYSADGRIGNLGKALESSPLDSNIDRSS-------ESDQEISSSTIEKAQKLVSEGM 246
            + WG    G++G  G     +PL   +DR +       E   + S + + K  ++ + G 
Sbjct: 2804 YSWGDGDFGKLGRGGSDGCYTPL--AVDRLNGLGVIQVECGAQFSLA-LTKYGEVWTWG- 2859

Query: 247  EKEKYMPI-------IWEPFLVEGV---EVVDIACGFDHSLVLGRNGVLLSCGSNVYGQL 296
             K  Y  +       + +P LVEG+   +++ +A G  H L +   G + + G N +GQ 
Sbjct: 2860 -KGDYFRLGHGNDHHVRKPTLVEGLRGKKIIHVAVGALHCLAVTDTGQVYAWGDNDHGQQ 2918

Query: 297  GREKQDMGMFPVDINFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRM 356
            G     +   P             L H L   + R + V+ G+   ++W        G  
Sbjct: 2919 GNGATSVNRKP------------SLVHDLE--DARVNRVSCGSSHSIAWVLVDQPSNGNQ 2964

Query: 357  GPDNVPLVVEGL 368
             P   P V + L
Sbjct: 2965 DPVTFPTVRDPL 2976



 Score = 83.6 bits (205), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 80/303 (26%), Positives = 129/303 (42%), Gaps = 31/303 (10%)

Query: 50  GGDAYEPTRVPGLPSDVTSVSAGH---YHSLAVTNNGAVWAWGRNNEVQLGRGALESRAT 106
           G +   P RV G      ++ A H    H LA+T +G V++WG  +  +LG G      +
Sbjct: 130 GSETQYPLRVHGFSDKPITMIASHADGKHYLALTQDGCVYSWGNGDGGRLGHG---DTVS 186

Query: 107 WNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRV 166
           +++PK +E L   N+         S+A+   G L+ WG+   G+LG G +  + + P+ V
Sbjct: 187 YDEPKLIESLLDKNIVFIACGSTYSAALSASGELYTWGRGNYGRLGHG-NFDDVLTPTLV 245

Query: 167 EALAGEKIVKVSFGWG--HALAQTEDGKLFGWGYSADGRIGNLGKALESSP------LDS 218
             L G  +V V+ G G    L  T  G +F WG    G++G  G     +P      LD 
Sbjct: 246 TTLKGHTVVHVACGSGDSQTLCVTASGIVFSWGDGDYGKLGRGGTDGSKTPKIVDKLLDI 305

Query: 219 NIDRSSESDQEISSSTIE---------KAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDI 269
           N+ +     Q  ++ T            A +L   G E+    P + E       ++ D+
Sbjct: 306 NVVKVFCGGQFSAALTAHGEVYTWGKGDAYRL-GHGSEEHVRYPKVIESL--RDKKIKDL 362

Query: 270 ACGFDHSLVLGRNGVLLSCGSNVYGQ----LGREKQDMGMFPVDINFHPVSISSGLGHSL 325
           + G  H L L  +  +   G N YGQ    LG    +  + P   +   + ++SG   S 
Sbjct: 363 SVGTTHILALTEDQFVYGWGRNDYGQIDPTLGPVVSEPTLCPTLSSKTVIGLASGPTQSF 422

Query: 326 AIC 328
           A C
Sbjct: 423 AWC 425



 Score = 82.4 bits (202), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 63/185 (34%), Positives = 92/185 (49%), Gaps = 13/185 (7%)

Query: 23  SASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVT---SVSAGHYHSLAV 79
           SASG  + ++G G+ G LG      G   D   PT V  L        +  +G   +L V
Sbjct: 215 SASG-ELYTWGRGNYGRLG-----HGNFDDVLTPTLVTTLKGHTVVHVACGSGDSQTLCV 268

Query: 80  TNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGS 139
           T +G V++WG  +  +LGRG  +   T   PK V+ L  +NV   F  G  S+A+   G 
Sbjct: 269 TASGIVFSWGDGDYGKLGRGGTDGSKT---PKIVDKLLDINVVKVFCGGQFSAALTAHGE 325

Query: 140 LWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYS 199
           ++ WGK    +LG G +      P  +E+L  +KI  +S G  H LA TED  ++GWG +
Sbjct: 326 VYTWGKGDAYRLGHGSE-EHVRYPKVIESLRDKKIKDLSVGTTHILALTEDQFVYGWGRN 384

Query: 200 ADGRI 204
             G+I
Sbjct: 385 DYGQI 389



 Score = 64.3 bits (155), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 80/297 (26%), Positives = 119/297 (40%), Gaps = 63/297 (21%)

Query: 84   AVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVW 143
            AV+ WG N++ QLG G   S+     P   E L ++              +  +G L+  
Sbjct: 2590 AVYVWGLNDKDQLG-GLKGSKIKL--PIYSEVLSKLKPIHIAGGSKTLFIVSQEGKLYAC 2646

Query: 144  GKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWG--HALAQTEDGKLFGWGYSAD 201
            G+   G+LGLG D      P  +  L+   I KV+   G  HALA T+DGK+F WG   D
Sbjct: 2647 GEGTNGRLGLGDD-NNVCEPKAIPFLSQFVIKKVAVHSGGKHALALTQDGKVFSWGEGED 2705

Query: 202  GRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLV 261
            G++G+ G  +                                  ++K K + I+      
Sbjct: 2706 GKLGH-GNCI---------------------------------SLDKPKLIEIL------ 2725

Query: 262  EGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLG------REKQDMGMFPVDINFHPV 315
            +   + DIACG  HS  +  NG L + G   YG+LG      + +  +    V      V
Sbjct: 2726 KSKRIRDIACGSGHSAAIASNGELYTWGLGEYGRLGHGDTITQTRPKLVQALVGQRVVQV 2785

Query: 316  SISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPD--NVPLVVEGLEG 370
            +  S    ++A+        T G   + SWG     +LGR G D    PL V+ L G
Sbjct: 2786 ACGSRDAQTMAL-------TTDGC--VYSWGDGDFGKLGRGGSDGCYTPLAVDRLNG 2833



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 75/309 (24%), Positives = 126/309 (40%), Gaps = 55/309 (17%)

Query: 69   VSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQ--VNVCAAFA 126
            ++ G      V+  G ++A G     +LG G   +     +PK +  L Q  +   A  +
Sbjct: 2627 IAGGSKTLFIVSQEGKLYACGEGTNGRLGLGDDNNVC---EPKAIPFLSQFVIKKVAVHS 2683

Query: 127  SGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALA 186
             G  + A+  DG ++ WG+ + G+LG G  I+    P  +E L  ++I  ++ G GH+ A
Sbjct: 2684 GGKHALALTQDGKVFSWGEGEDGKLGHGNCIS-LDKPKLIEILKSKRIRDIACGSGHSAA 2742

Query: 187  QTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGM 246
               +G+L+ WG    GR+G+     ++ P                    +  Q LV    
Sbjct: 2743 IASNGELYTWGLGEYGRLGHGDTITQTRP--------------------KLVQALV---- 2778

Query: 247  EKEKYMPIIWEPFLVEGVEVVDIACGFD--HSLVLGRNGVLLSCGSNVYGQLGREKQDMG 304
                            G  VV +ACG     ++ L  +G + S G   +G+LGR   D  
Sbjct: 2779 ----------------GQRVVQVACGSRDAQTMALTTDGCVYSWGDGDFGKLGRGGSDGC 2822

Query: 305  MFPVDINFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPDNV--P 362
              P+ ++       +GLG     C  + S        + +WG     +LG     +V  P
Sbjct: 2823 YTPLAVDR-----LNGLGVIQVECGAQFSLALTKYGEVWTWGKGDYFRLGHGNDHHVRKP 2877

Query: 363  LVVEGLEGE 371
             +VEGL G+
Sbjct: 2878 TLVEGLRGK 2886


>gi|449504701|ref|XP_002190698.2| PREDICTED: probable E3 ubiquitin-protein ligase HERC4 [Taeniopygia
           guttata]
          Length = 991

 Score = 90.9 bits (224), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 61/235 (25%), Positives = 104/235 (44%), Gaps = 42/235 (17%)

Query: 64  SDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCA 123
            ++ +VS G  H+LA+ + G V+AWG   + QLG    E       P+ +  L ++ +  
Sbjct: 84  QNIVAVSCGEAHTLALNDKGQVYAWGLATDGQLGLPGTEECV--RVPRNIRSLSEIQIVQ 141

Query: 124 AFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGH 183
                  S A+     ++ WG++K GQLGLG +  +   P  +++L G    +++ G  H
Sbjct: 142 VACGYYHSLALSKGSEVFSWGQNKYGQLGLGYEYKKQTSPQMIKSLLGIPFAQIAAGGAH 201

Query: 184 ALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVS 243
           +   T  G +FGWG +  G++G          L+ + DR                     
Sbjct: 202 SFVLTLSGAIFGWGRNKFGQLG----------LNDDNDR--------------------- 230

Query: 244 EGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGR 298
                  Y+P + +   +   +VV I CG DH+  L + G + + G+  YGQLG 
Sbjct: 231 -------YVPTLLKS--LRSQKVVHICCGEDHTAALTKEGGVFTFGAGGYGQLGH 276



 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 57/188 (30%), Positives = 97/188 (51%), Gaps = 8/188 (4%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPS-DVTSVSAGHYHSLAVTNNGAVWA 87
           V ++G  + G LGLP    G       P  +  L    +  V+ G+YHSLA++    V++
Sbjct: 105 VYAWGLATDGQLGLP----GTEECVRVPRNIRSLSEIQIVQVACGYYHSLALSKGSEVFS 160

Query: 88  WGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSK 147
           WG+N   QLG G    + T   P+ ++ L  +      A G  S  +   G+++ WG++K
Sbjct: 161 WGQNKYGQLGLGYEYKKQT--SPQMIKSLLGIPFAQIAAGGAHSFVLTLSGAIFGWGRNK 218

Query: 148 RGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNL 207
            GQLGL  D  +  VP+ +++L  +K+V +  G  H  A T++G +F +G    G++G+ 
Sbjct: 219 FGQLGLNDD-NDRYVPTLLKSLRSQKVVHICCGEDHTAALTKEGGVFTFGAGGYGQLGHN 277

Query: 208 GKALESSP 215
             + E +P
Sbjct: 278 STSHEINP 285



 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 76/296 (25%), Positives = 119/296 (40%), Gaps = 61/296 (20%)

Query: 85  VWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWG 144
           +  WG  +  QLG G ++      +P++ +      V         +  + DDG+++  G
Sbjct: 1   MLCWGNASFGQLGLGGIDEEIVL-EPRKSDFFLNKRVRDVGCGLRHTVFVLDDGTVYTCG 59

Query: 145 KSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRI 204
            +  GQLG  K       P  V AL  + IV VS G  H LA  + G+++ WG + DG++
Sbjct: 60  CNDLGQLGHEKARKR---PEHVGALDAQNIVAVSCGEAHTLALNDKGQVYAWGLATDGQL 116

Query: 205 GNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGV 264
           G  G   E   +  NI   SE                                      +
Sbjct: 117 GLPGTE-ECVRVPRNIRSLSE--------------------------------------I 137

Query: 265 EVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLG-----REKQDMGMFPVDINFHPVSISS 319
           ++V +ACG+ HSL L +   + S G N YGQLG     +++    M    +      I++
Sbjct: 138 QIVQVACGYYHSLALSKGSEVFSWGQNKYGQLGLGYEYKKQTSPQMIKSLLGIPFAQIAA 197

Query: 320 GLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPDN---VPLVVEGLEGES 372
           G  HS  +          GA  I  WG N+  QLG +  DN   VP +++ L  + 
Sbjct: 198 GGAHSFVL-------TLSGA--IFGWGRNKFGQLG-LNDDNDRYVPTLLKSLRSQK 243


>gi|301625970|ref|XP_002942173.1| PREDICTED: protein RCC2 homolog [Xenopus (Silurana) tropicalis]
          Length = 456

 Score = 90.9 bits (224), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 89/306 (29%), Positives = 141/306 (46%), Gaps = 39/306 (12%)

Query: 65  DVTSVSAGHY--HSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVC 122
            V +V+AG    HSL +T  G +W+WGRN++ QLG G ++     + PK +E L      
Sbjct: 140 QVRTVAAGPCAAHSLLITVEGKLWSWGRNDKGQLGHGDVKR---IDVPKLIESLKGEVFV 196

Query: 123 AAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALA-GEKIVKVSFGW 181
                   + A+ ++GS++ +G++K GQLGLG + T+A VPS  + L  G+ I KV+ G 
Sbjct: 197 HGACGRNHTLALTENGSVYAFGENKMGQLGLG-NKTDA-VPSPAQILYNGQPITKVACGA 254

Query: 182 GHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKL 241
             ++     G L+ +G    G++G+            N D    +  +      E   + 
Sbjct: 255 EFSMIMDCKGNLYSFGCPEYGQLGH------------NSDGKYIARAQRIEYDCELIARR 302

Query: 242 VSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQ 301
           ++  +EK K   ++  P +V    V DIACG +HSLVL     + S G   YG+LG  +Q
Sbjct: 303 IAIFIEKTKDGQVLPVPNVV----VRDIACGINHSLVLDSQKRVFSWGFGGYGRLGHSEQ 358

Query: 302 DMGMFPVDINFHPV------SISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGR 355
              M P  +            I +G   S A+ E+          G+  WG   +S+   
Sbjct: 359 RDEMVPRLVKLFDFPGRGASQIYAGATCSFAVSEM---------GGLFFWGATNTSRDST 409

Query: 356 MGPDNV 361
           M P  V
Sbjct: 410 MYPKTV 415


>gi|159037172|ref|YP_001536425.1| chromosome condensation regulator RCC1 [Salinispora arenicola
           CNS-205]
 gi|157916007|gb|ABV97434.1| regulator of chromosome condensation RCC1 [Salinispora arenicola
           CNS-205]
          Length = 560

 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 102/345 (29%), Positives = 154/345 (44%), Gaps = 41/345 (11%)

Query: 30  VSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPS--DVTSVSAGHYHSLAVTNNGAVWA 87
           +++GD + G LG      G   D+  P  V  LP+   VT+V+AG  H+LAVT+ G + A
Sbjct: 59  LAWGDNASGQLG-----DGSTADSSMPVAV-SLPAGVTVTTVAAGAAHNLAVTSAGTILA 112

Query: 88  WGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSK 147
           WG N+  QLG G   +R T   P  V     V V A  A    S A+   G++  WG + 
Sbjct: 113 WGDNSSGQLGDGTTSNRHT---PVAVGLPTGVTVTAVAAGAAHSLALTSAGTVLAWGANT 169

Query: 148 RGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNL 207
            GQLG G  I ++  P  V    G     V+ G  H+LA T  G +  WG +A G++G  
Sbjct: 170 IGQLGDGTTI-DSPAPVDVNLPPGVTATAVAAGAAHSLAVTSAGTVLAWGDNASGQLGEG 228

Query: 208 GKALESSP----LDSNIDRSSESDQEISSSTIEKAQKLVS----------EGMEKEKYMP 253
                 +P    L S +  ++ +  ++ S  +  A  +++          +G   ++  P
Sbjct: 229 TTIPSRTPVVVSLPSGVTATAVAGGDLHSLAVTSAGAVLAWGSNSSGQLGDGTTADRSTP 288

Query: 254 IIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFH 313
           +     L  G  V  +A G   SL L   G +L+ GSN  GQLG         PV ++  
Sbjct: 289 VAVS--LSGGTTVTAVAAGIAFSLALSSAGAVLAWGSNSSGQLGDGTTADRSTPVTVSSP 346

Query: 314 P----VSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLG 354
                 +I+ G  H LA+  V ++         ++WG N   QLG
Sbjct: 347 AGTTVTAIAGGDAHGLAVTSVGAA---------IAWGNNSFGQLG 382



 Score = 82.4 bits (202), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 65/183 (35%), Positives = 91/183 (49%), Gaps = 18/183 (9%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVP---GLPSDVTS--VSAGHYHSLAVTNNG 83
           V+++GD + G LG  T++         P+R P    LPS VT+  V+ G  HSLAVT+ G
Sbjct: 214 VLAWGDNASGQLGEGTTI---------PSRTPVVVSLPSGVTATAVAGGDLHSLAVTSAG 264

Query: 84  AVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVW 143
           AV AWG N+  QLG G    R+T   P  V       V A  A    S A+   G++  W
Sbjct: 265 AVLAWGSNSSGQLGDGTTADRST---PVAVSLSGGTTVTAVAAGIAFSLALSSAGAVLAW 321

Query: 144 GKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGR 203
           G +  GQLG G     +  P  V + AG  +  ++ G  H LA T  G    WG ++ G+
Sbjct: 322 GSNSSGQLGDGTTADRS-TPVTVSSPAGTTVTAIAGGDAHGLAVTSVGAAIAWGNNSFGQ 380

Query: 204 IGN 206
           +G+
Sbjct: 381 LGD 383



 Score = 80.5 bits (197), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 94/337 (27%), Positives = 152/337 (45%), Gaps = 49/337 (14%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHY--HSLAVTNNGAVW 86
           ++++GD S G LG      G   + + P  V GLP+ VT  +      HSLA+T+ G V 
Sbjct: 110 ILAWGDNSSGQLG-----DGTTSNRHTPVAV-GLPTGVTVTAVAAGAAHSLALTSAGTVL 163

Query: 87  AWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVV------SSAIGDDGSL 140
           AWG N   QLG G      T + P  V+    VN+     +  V      S A+   G++
Sbjct: 164 AWGANTIGQLGDGT-----TIDSPAPVD----VNLPPGVTATAVAAGAAHSLAVTSAGTV 214

Query: 141 WVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSA 200
             WG +  GQLG G  I  +  P  V   +G     V+ G  H+LA T  G +  WG ++
Sbjct: 215 LAWGDNASGQLGEGTTI-PSRTPVVVSLPSGVTATAVAGGDLHSLAVTSAGAVLAWGSNS 273

Query: 201 DGRIGNLGKALESSPLDSNIDRSSESDQEIS----SSTIEKAQKLVS----------EGM 246
            G++G+   A  S+P+  ++   +      +    S  +  A  +++          +G 
Sbjct: 274 SGQLGDGTTADRSTPVAVSLSGGTTVTAVAAGIAFSLALSSAGAVLAWGSNSSGQLGDGT 333

Query: 247 EKEKYMPI-IWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGM 305
             ++  P+ +  P    G  V  IA G  H L +   G  ++ G+N +GQLG       +
Sbjct: 334 TADRSTPVTVSSP---AGTTVTAIAGGDAHGLAVTSVGAAIAWGNNSFGQLGDGTNTDRV 390

Query: 306 FPVDINFHPV------SISSGLGHSLAICEVRSSNVT 336
            PV ++  PV      +I++G  HS+A+    +S+VT
Sbjct: 391 TPVAVSL-PVGTTTLTAIAAGAAHSVAVAAPPTSSVT 426



 Score = 38.9 bits (89), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 31/80 (38%), Positives = 40/80 (50%), Gaps = 6/80 (7%)

Query: 28  AVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLP-SDVTSVSAGHYHSLAVTNNGAVW 86
           AV+++G  S G LG      G   D   P  V     + VT+++ G  H LAVT+ GA  
Sbjct: 317 AVLAWGSNSSGQLG-----DGTTADRSTPVTVSSPAGTTVTAIAGGDAHGLAVTSVGAAI 371

Query: 87  AWGRNNEVQLGRGALESRAT 106
           AWG N+  QLG G    R T
Sbjct: 372 AWGNNSFGQLGDGTNTDRVT 391


>gi|444910461|ref|ZP_21230646.1| BNR repeat domain protein [Cystobacter fuscus DSM 2262]
 gi|444719398|gb|ELW60195.1| BNR repeat domain protein [Cystobacter fuscus DSM 2262]
          Length = 196

 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 76/246 (30%), Positives = 107/246 (43%), Gaps = 52/246 (21%)

Query: 66  VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAF 125
           + ++SAG YHSLAV  +G VWAWG N + +LG G    R T   P +V GL   +V A  
Sbjct: 1   MVALSAGCYHSLAVRTDGTVWAWGYNYDGRLGDGTTTPRLT---PVQVPGL--TDVVALS 55

Query: 126 ASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHAL 185
           A    S A+  DG++W WG +  GQLG   D T     S V+  +   +V +S G  H+L
Sbjct: 56  AGDSHSLALRTDGTVWAWGSNTYGQLG---DGTTTFRRSPVQVPSLTDVVALSAGRYHSL 112

Query: 186 AQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEG 245
           A   DG ++ WG       G LG   ++S L                             
Sbjct: 113 ALRTDGTVWAWG---PNNYGQLGYGTDTSGL----------------------------- 140

Query: 246 MEKEKYMPIIWEPFLVEGVE-VVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMG 304
                       P LV  +    ++  G +HSL L  +G + + G N YGQLG     + 
Sbjct: 141 -----------FPVLVSNLTGTSNLYVGAEHSLALRTDGTVRAWGDNYYGQLGDGTSALF 189

Query: 305 MFPVDI 310
           + PV +
Sbjct: 190 LHPVQV 195



 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 64/162 (39%), Positives = 85/162 (52%), Gaps = 9/162 (5%)

Query: 55  EPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVE 114
            P +VPGL +DV ++SAG  HSLA+  +G VWAWG N   QLG G    R     P +V 
Sbjct: 41  TPVQVPGL-TDVVALSAGDSHSLALRTDGTVWAWGSNTYGQLGDGTTTFR---RSPVQVP 96

Query: 115 GLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKI 174
            L   +V A  A    S A+  DG++W WG +  GQLG G D T  + P  V  L G   
Sbjct: 97  SL--TDVVALSAGRYHSLALRTDGTVWAWGPNNYGQLGYGTD-TSGLFPVLVSNLTGTSN 153

Query: 175 VKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPL 216
           + V  G  H+LA   DG +  WG +  G++G+   AL   P+
Sbjct: 154 LYV--GAEHSLALRTDGTVRAWGDNYYGQLGDGTSALFLHPV 193



 Score = 64.7 bits (156), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 66/234 (28%), Positives = 100/234 (42%), Gaps = 57/234 (24%)

Query: 124 AFASGVVSS-AIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWG 182
           A ++G   S A+  DG++W WG +  G+LG G   T  + P +V  L    +V +S G  
Sbjct: 3   ALSAGCYHSLAVRTDGTVWAWGYNYDGRLGDGT-TTPRLTPVQVPGL--TDVVALSAGDS 59

Query: 183 HALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLV 242
           H+LA   DG ++ WG +  G++G+       SP+            ++ S T        
Sbjct: 60  HSLALRTDGTVWAWGSNTYGQLGDGTTTFRRSPV------------QVPSLT-------- 99

Query: 243 SEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQD 302
                                 +VV ++ G  HSL L  +G + + G N YGQLG     
Sbjct: 100 ----------------------DVVALSAGRYHSLALRTDGTVWAWGPNNYGQLGYGTDT 137

Query: 303 MGMFPVDI-NFHPVS-ISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLG 354
            G+FPV + N    S +  G  HSLA+   R+         + +WG N   QLG
Sbjct: 138 SGLFPVLVSNLTGTSNLYVGAEHSLAL---RTDGT------VRAWGDNYYGQLG 182



 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 58/205 (28%), Positives = 85/205 (41%), Gaps = 59/205 (28%)

Query: 174 IVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSS 233
           +V +S G  H+LA   DG ++ WGY+ DGR+G                            
Sbjct: 1   MVALSAGCYHSLAVRTDGTVWAWGYNYDGRLG---------------------------- 32

Query: 234 TIEKAQKLVSEGMEKEKYMPIIWEPFLVEGV-EVVDIACGFDHSLVLGRNGVLLSCGSNV 292
                     +G    +  P+      V G+ +VV ++ G  HSL L  +G + + GSN 
Sbjct: 33  ----------DGTTTPRLTPV-----QVPGLTDVVALSAGDSHSLALRTDGTVWAWGSNT 77

Query: 293 YGQLGREKQDMGMFPVDIN--FHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRS 350
           YGQLG         PV +      V++S+G  HSLA+   R+         + +WG N  
Sbjct: 78  YGQLGDGTTTFRRSPVQVPSLTDVVALSAGRYHSLAL---RTDGT------VWAWGPNNY 128

Query: 351 SQLGRMGPDN---VPLVVEGLEGES 372
            QLG  G D     P++V  L G S
Sbjct: 129 GQLG-YGTDTSGLFPVLVSNLTGTS 152


>gi|432106315|gb|ELK32196.1| RCC1 and BTB domain-containing protein 1 [Myotis davidii]
          Length = 531

 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 54/162 (33%), Positives = 88/162 (54%), Gaps = 5/162 (3%)

Query: 62  LPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNV 121
           L   V  V+ G +HS+A+  +G V+AWG NN  Q+G G+  ++ T   P++V     +  
Sbjct: 126 LIKQVVEVACGSHHSVALAADGEVFAWGYNNCGQVGSGSTANQPT---PRKVTNCLHIKR 182

Query: 122 CAAFASGVVSS-AIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFG 180
               A G  SS A+ D G ++ WG +  GQLGLG ++ + + P RV AL    + ++  G
Sbjct: 183 VVGIACGQTSSMAVLDTGEVYGWGYNGNGQLGLGNNVNQ-LTPVRVAALHSVCVNQIVCG 241

Query: 181 WGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDR 222
           + H LA T++G L+ WG +  G++G   K    SP    +++
Sbjct: 242 YAHTLALTDEGLLYAWGANTYGQLGTGNKNNLLSPTHIMVEK 283



 Score = 75.9 bits (185), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 72/293 (24%), Positives = 117/293 (39%), Gaps = 67/293 (22%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLP-SDVTSVSAGH-YHSLAVTNNGAVW 86
           V  FG      LG     TG       P ++  L    + S+S G   H L  T +G V+
Sbjct: 43  VFVFGLNYSNCLG-----TGDNQSTLTPKKLEALCGKKIKSLSYGSGPHVLLSTEDGVVY 97

Query: 87  AWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVV---------SSAIGDD 137
           AWG N   QLG G              +G+  + VC       V         S A+  D
Sbjct: 98  AWGHNGYSQLGNGTTN-----------QGIAPIQVCTNLLIKQVVEVACGSHHSVALAAD 146

Query: 138 GSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWG 197
           G ++ WG +  GQ+G G    +         L  +++V ++ G   ++A  + G+++GWG
Sbjct: 147 GEVFAWGYNNCGQVGSGSTANQPTPRKVTNCLHIKRVVGIACGQTSSMAVLDTGEVYGWG 206

Query: 198 YSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWE 257
           Y+ +G++G          L +N+++ +                            P+   
Sbjct: 207 YNGNGQLG----------LGNNVNQLT----------------------------PV--R 226

Query: 258 PFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDI 310
              +  V V  I CG+ H+L L   G+L + G+N YGQLG   ++  + P  I
Sbjct: 227 VAALHSVCVNQIVCGYAHTLALTDEGLLYAWGANTYGQLGTGNKNNLLSPTHI 279



 Score = 62.0 bits (149), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 61/228 (26%), Positives = 98/228 (42%), Gaps = 57/228 (25%)

Query: 134 IGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWG-HALAQTEDGK 192
           + +D  ++V+G +    LG G D    + P ++EAL G+KI  +S+G G H L  TEDG 
Sbjct: 37  VTEDDEVFVFGLNYSNCLGTG-DNQSTLTPKKLEALCGKKIKSLSYGSGPHVLLSTEDGV 95

Query: 193 LFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYM 252
           ++ WG++   ++GN                                      G   +   
Sbjct: 96  VYAWGHNGYSQLGN--------------------------------------GTTNQGIA 117

Query: 253 PI-IWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDIN 311
           PI +    L++  +VV++ACG  HS+ L  +G + + G N  GQ+G         P  + 
Sbjct: 118 PIQVCTNLLIK--QVVEVACGSHHSVALAADGEVFAWGYNNCGQVGSGSTANQPTPRKVT 175

Query: 312 --FH---PVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLG 354
              H    V I+ G   S+A+ +      TG   G   WG+N + QLG
Sbjct: 176 NCLHIKRVVGIACGQTSSMAVLD------TGEVYG---WGYNGNGQLG 214


>gi|345788246|ref|XP_003433049.1| PREDICTED: LOW QUALITY PROTEIN: secretion-regulating guanine
           nucleotide exchange factor [Canis lupus familiaris]
          Length = 461

 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 98/313 (31%), Positives = 140/313 (44%), Gaps = 45/313 (14%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAW 88
           V+S G  S G LG+P            P  +  L   V  V+AG  H+LA T +G V+ W
Sbjct: 120 VLSCGSNSFGQLGVPQGPR----RCVVPQAIELLRERVVCVAAGLRHALAATASGTVFQW 175

Query: 89  GR---NNEVQLGRG-ALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWG 144
           G    ++  +L  G  L    T  +P RV GL+        A    S+++ D G L+VWG
Sbjct: 176 GTGLASSGRRLCPGQTLPPFLTAKEPSRVTGLENSKATCVLAGSDHSASLTDAGELYVWG 235

Query: 145 KSKRGQLG-LGKDITEAIVPSRVEA--LAGEKIVKVSFGWGHALAQTEDGKLFGWGYSAD 201
            +K GQL  L   + +   P ++EA     EK+  V  GW H +AQTE GK+F WG  AD
Sbjct: 236 SNKHGQLASLAAFLPK---PQKIEAHCFQNEKVTSVWSGWTHLVAQTETGKVFTWGR-AD 291

Query: 202 GRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLV 261
              G LG+ LES   +    R+ +S    S                 +K MP        
Sbjct: 292 --YGQLGRQLESH--EDWKARNQDSSFPCSG---------------PQKSMPSSLRCL-- 330

Query: 262 EGVEVVDIACGFDHSL-VLGRNGVLLSCGSNVYGQLG--REKQDMGMFPVDI--NFHPVS 316
                 +++CG +H+L V+G  G   S G N +G  G   E       PV+   +   + 
Sbjct: 331 --TGAAEVSCGSEHNLAVIG--GTCYSWGWNEHGMCGDGSEANVWAPKPVEALRSSRGLL 386

Query: 317 ISSGLGHSLAICE 329
           +  G GHSLA+C+
Sbjct: 387 VGCGAGHSLALCQ 399



 Score = 67.8 bits (164), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 94/373 (25%), Positives = 147/373 (39%), Gaps = 49/373 (13%)

Query: 33  GDGSQGALGLPTSLTGVGGDAYEPTRVPGL--PSDVTSVSAGHYHSLAVTNNGAVWAWGR 90
           G  S G LGL     G   D   P ++     P  +  ++ G  HS  VT+ G+++  G 
Sbjct: 19  GANSYGQLGL-----GHKEDVLLPQQLDDFCKPECIRRITGGGGHSAVVTDGGSLFVCGL 73

Query: 91  NNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQ 150
           N + QLG G  E    +   + + G     V   +   ++   + + G +   G +  GQ
Sbjct: 74  NKDGQLGLGHTEDVLYFTSCRSLLGCPIQQVACGWDFTII---LTESGQVLSCGSNSFGQ 130

Query: 151 LGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGW--GYSADGRIGNLG 208
           LG+ +     +VP  +E L  E++V V+ G  HALA T  G +F W  G ++ GR    G
Sbjct: 131 LGVPQGPRRCVVPQAIELLR-ERVVCVAAGLRHALAATASGTVFQWGTGLASSGRRLCPG 189

Query: 209 KALESSPLDSNIDRSSESDQEISSST-----------IEKAQKLVSEGMEKEKYM----- 252
           + L   P  +  + S  +  E S +T           +  A +L   G  K   +     
Sbjct: 190 QTL--PPFLTAKEPSRVTGLENSKATCVLAGSDHSASLTDAGELYVWGSNKHGQLASLAA 247

Query: 253 ----PIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGRE---KQDMGM 305
               P   E    +  +V  +  G+ H +     G + + G   YGQLGR+    +D   
Sbjct: 248 FLPKPQKIEAHCFQNEKVTSVWSGWTHLVAQTETGKVFTWGRADYGQLGRQLESHEDWKA 307

Query: 306 FPVDINFHPVSISSGLGHSLAICEVRSSNVTGGAR--------GIVSWGWNRSSQLGRMG 357
              D +F        +  SL  C   ++ V+ G+            SWGWN     G   
Sbjct: 308 RNQDSSFPCSGPQKSMPSSLR-CLTGAAEVSCGSEHNLAVIGGTCYSWGWNEHGMCGDGS 366

Query: 358 PDNV--PLVVEGL 368
             NV  P  VE L
Sbjct: 367 EANVWAPKPVEAL 379



 Score = 45.8 bits (107), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 57/185 (30%), Positives = 80/185 (43%), Gaps = 38/185 (20%)

Query: 66  VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAF 125
           VTSV +G  H +A T  G V+ WGR +  QLGR  LES   W    +    D    C+  
Sbjct: 265 VTSVWSGWTHLVAQTETGKVFTWGRADYGQLGR-QLESHEDW----KARNQDSSFPCSGP 319

Query: 126 ASGVVSS----------AIGDD-------GSLWVWGKSKRGQLGLGKDITEAIV--PSRV 166
              + SS          + G +       G+ + WG ++ G  G   D +EA V  P  V
Sbjct: 320 QKSMPSSLRCLTGAAEVSCGSEHNLAVIGGTCYSWGWNEHGMCG---DGSEANVWAPKPV 376

Query: 167 EALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSE- 225
           EAL   + + V  G GH+LA  +          A   +    KA  SSP D+  D  S+ 
Sbjct: 377 EALRSSRGLLVGCGAGHSLALCQP--------PARPELDQRPKATSSSP-DATEDTESQE 427

Query: 226 -SDQE 229
            +D+E
Sbjct: 428 ATDKE 432


>gi|328715082|ref|XP_001946768.2| PREDICTED: e3 ubiquitin-protein ligase HERC2-like [Acyrthosiphon
            pisum]
          Length = 4404

 Score = 90.9 bits (224), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 85/306 (27%), Positives = 129/306 (42%), Gaps = 60/306 (19%)

Query: 56   PTRVPGLPSDV-TSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVE 114
            P  V GL + +  +V++G  H LA++  G V+AWG  ++ +LG G   +R T + P+ V+
Sbjct: 3624 PQLVQGLNNIIKVAVNSGGRHCLALSTTGEVYAWGDGDDGKLGLG---NRVTHSKPQLVQ 3680

Query: 115  GLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKI 174
             L    +      G  S+AI   G L+ WGK + G+LG G D  + + P  V+ L    +
Sbjct: 3681 SLSDKCIIDIACGGFHSAAISRYGHLYTWGKGRYGRLGHG-DYEDYLYPKLVQGLINYHV 3739

Query: 175  VKVSFGWGHA--LAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISS 232
            VKV+ G G A  +  T D  ++ WG   DG  G LG          NI  S +   +I S
Sbjct: 3740 VKVACGSGDAQTMCVTSDDNVWSWG---DGDYGKLGH---------NISESCKLPCKIES 3787

Query: 233  STIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNV 292
                                        + G  ++ I CG   S+ L  NG L + G   
Sbjct: 3788 ----------------------------LSGKGIIQIDCGSQFSVALSANGTLYTWGKGD 3819

Query: 293  YGQLGREKQDMGMFPVDIN----FHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWN 348
            Y +LG    +    P  ++       V  S+G  H LA+ +            + +WG N
Sbjct: 3820 YFRLGHGSSEHVRKPKPVSGLQGKKIVQFSTGSLHVLALTDDGE---------VYAWGDN 3870

Query: 349  RSSQLG 354
               QLG
Sbjct: 3871 DEGQLG 3876



 Score = 84.7 bits (208), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 88/364 (24%), Positives = 151/364 (41%), Gaps = 69/364 (18%)

Query: 4    LKSVVHNHVNVLTSRIFMRSASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLP 63
            L +++   VN         S +G  V ++GDG  G LGL   +T       +P  V  L 
Sbjct: 3630 LNNIIKVAVNSGGRHCLALSTTGE-VYAWGDGDDGKLGLGNRVT-----HSKPQLVQSLS 3683

Query: 64   SD-VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVC 122
               +  ++ G +HS A++  G ++ WG+    +LG G  E    +  PK V+GL   +V 
Sbjct: 3684 DKCIIDIACGGFHSAAISRYGHLYTWGKGRYGRLGHGDYED---YLYPKLVQGLINYHVV 3740

Query: 123  -AAFASGVVSS-AIGDDGSLWVWGKSKRGQLGLGKDITEAI-VPSRVEALAGEKIVKVSF 179
              A  SG   +  +  D ++W WG    G+  LG +I+E+  +P ++E+L+G+ I+++  
Sbjct: 3741 KVACGSGDAQTMCVTSDDNVWSWGDGDYGK--LGHNISESCKLPCKIESLSGKGIIQIDC 3798

Query: 180  GWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQ 239
            G   ++A + +G L+ WG     R+G+                         SS   +  
Sbjct: 3799 GSQFSVALSANGTLYTWGKGDYFRLGH------------------------GSSEHVRKP 3834

Query: 240  KLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGRE 299
            K VS                 ++G ++V  + G  H L L  +G + + G N  GQLG  
Sbjct: 3835 KPVSG----------------LQGKKIVQFSTGSLHVLALTDDGEVYAWGDNDEGQLG-- 3876

Query: 300  KQDMGMFPVDINFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPD 359
                     D   HP++    +    A+   R   V+ G+    +W    +       P 
Sbjct: 3877 ---------DGTAHPIARPRPIA---ALKGKRIQQVSCGSAHSFAWASEEACHTDNSTPT 3924

Query: 360  NVPL 363
             +PL
Sbjct: 3925 TIPL 3928



 Score = 76.3 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 86/370 (23%), Positives = 141/370 (38%), Gaps = 107/370 (28%)

Query: 16   TSRIFMRSASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDV---TSVSAG 72
            +  +F+ S  G   V  GD S G LG+P       G    P ++PGL   V    +V +G
Sbjct: 2635 SKSLFIVSNEGKVFVC-GDSSGGRLGIPFC-----GKVSSPRQIPGLSQFVIKTVAVHSG 2688

Query: 73   HYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSS 132
              H++A++ +G V +WG   + +LG G +    T + PK ++ L    V         S+
Sbjct: 2689 GKHAMALSLDGKVLSWGDGEDGKLGHGDI---LTLDTPKLIDSLLAKRVFYIACGSAHSA 2745

Query: 133  AIGDDGSLWVWGKSKRGQLG----------------LGKDITEA---------------- 160
            AI  DG L+ WG+ + G+LG                +GK+IT+                 
Sbjct: 2746 AITSDGELYTWGQGQYGRLGHSDEVSQHTPKLVKEFVGKNITQVACGSRDAQTLALDSEG 2805

Query: 161  ---------------------IVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYS 199
                                   P +VE L G ++V++  G   ++A T  G+++ WG  
Sbjct: 2806 NVYSWGDGDFGKLGRGGSDGCCTPQKVERLVGHRVVQIECGAQFSVALTATGQVWTWGKG 2865

Query: 200  ADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPF 259
               R+G LG+                  + +   T+    KLV+                
Sbjct: 2866 EYYRLG-LGRG-----------------EHVRRPTLVNQLKLVT---------------- 2891

Query: 260  LVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFP-VDINFHPVSIS 318
                  +  IA G  H + +   G +   G N +GQ G    +    P +  NF+ + I+
Sbjct: 2892 ------IDHIAVGTLHCIAVSTQGDVYCWGDNDHGQQGNGTTNANQEPRLVTNFNNIKIN 2945

Query: 319  S-GLGHSLAI 327
              G G S +I
Sbjct: 2946 RVGCGSSQSI 2955



 Score = 72.8 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 71/303 (23%), Positives = 117/303 (38%), Gaps = 65/303 (21%)

Query: 81   NNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSL 140
            N   V+ WG N+  QL   A    +    P   + L  +             A+   G +
Sbjct: 3542 NGQVVYVWGHNHRGQL---ACMDSSQVKKPLACDSLSVLKPTQVIGGEQTMFAVTSYGKV 3598

Query: 141  WVWGKSKRGQLGLGKDITE---AIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWG 197
            +  G ++ G+LG+G    +    + P  V+ L     V V+ G  H LA +  G+++ WG
Sbjct: 3599 YASGYTESGRLGIGPYNPKNPYVVTPQLVQGLNNIIKVAVNSGGRHCLALSTTGEVYAWG 3658

Query: 198  YSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWE 257
               DG++G LG            +R + S  ++  S  +K                    
Sbjct: 3659 DGDDGKLG-LG------------NRVTHSKPQLVQSLSDKC------------------- 3686

Query: 258  PFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPV----DINFH 313
                    ++DIACG  HS  + R G L + G   YG+LG    +  ++P      IN+H
Sbjct: 3687 --------IIDIACGGFHSAAISRYGHLYTWGKGRYGRLGHGDYEDYLYPKLVQGLINYH 3738

Query: 314  PVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPD-----NVPLVVEGL 368
             V ++ G G +  +C     NV         W W      G++G +      +P  +E L
Sbjct: 3739 VVKVACGSGDAQTMCVTSDDNV---------WSWG-DGDYGKLGHNISESCKLPCKIESL 3788

Query: 369  EGE 371
             G+
Sbjct: 3789 SGK 3791



 Score = 69.7 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 71/288 (24%), Positives = 117/288 (40%), Gaps = 56/288 (19%)

Query: 21   MRSASGTAVVSFGDGSQGALGLPTSLTGVGGDAYE-PTRVPGLPS-DVTSVSAGHYHSLA 78
            +R  S  AV  +G   +G LG      G+ G   + PT    L +     +  G      
Sbjct: 2587 IRVDSEYAVYVWGLNDKGQLG------GLNGSKVKRPTFNEALTALKPIEIVGGSKSLFI 2640

Query: 79   VTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQ--VNVCAAFASGVVSSAIGD 136
            V+N G V+  G ++    GR  +      + P+++ GL Q  +   A  + G  + A+  
Sbjct: 2641 VSNEGKVFVCGDSSG---GRLGIPFCGKVSSPRQIPGLSQFVIKTVAVHSGGKHAMALSL 2697

Query: 137  DGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGW 196
            DG +  WG  + G+LG G DI     P  +++L  +++  ++ G  H+ A T DG+L+ W
Sbjct: 2698 DGKVLSWGDGEDGKLGHG-DILTLDTPKLIDSLLAKRVFYIACGSAHSAAITSDGELYTW 2756

Query: 197  GYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIW 256
            G    GR+G+  +  + +P                        KLV E +          
Sbjct: 2757 GQGQYGRLGHSDEVSQHTP------------------------KLVKEFV---------- 2782

Query: 257  EPFLVEGVEVVDIACGFD--HSLVLGRNGVLLSCGSNVYGQLGREKQD 302
                  G  +  +ACG     +L L   G + S G   +G+LGR   D
Sbjct: 2783 ------GKNITQVACGSRDAQTLALDSEGNVYSWGDGDFGKLGRGGSD 2824



 Score = 63.9 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 57/206 (27%), Positives = 93/206 (45%), Gaps = 21/206 (10%)

Query: 13   NVLTSRIFM---RSASGTAVVS------FGDGSQGALGLPTSLTGVGGDAYEPTRVPG-L 62
            ++L  R+F     SA   A+ S      +G G  G LG    ++      + P  V   +
Sbjct: 2728 SLLAKRVFYIACGSAHSAAITSDGELYTWGQGQYGRLGHSDEVS-----QHTPKLVKEFV 2782

Query: 63   PSDVTSVSAGHY--HSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVN 120
              ++T V+ G     +LA+ + G V++WG  +  +LGRG  +   T   P++VE L    
Sbjct: 2783 GKNITQVACGSRDAQTLALDSEGNVYSWGDGDFGKLGRGGSDGCCT---PQKVERLVGHR 2839

Query: 121  VCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFG 180
            V         S A+   G +W WGK +  +LGLG+       P+ V  L    I  ++ G
Sbjct: 2840 VVQIECGAQFSVALTATGQVWTWGKGEYYRLGLGRG-EHVRRPTLVNQLKLVTIDHIAVG 2898

Query: 181  WGHALAQTEDGKLFGWGYSADGRIGN 206
              H +A +  G ++ WG +  G+ GN
Sbjct: 2899 TLHCIAVSTQGDVYCWGDNDHGQQGN 2924



 Score = 44.3 bits (103), Expect = 0.091,   Method: Composition-based stats.
 Identities = 23/65 (35%), Positives = 34/65 (52%)

Query: 133 AIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGK 192
           A+   G ++ WG ++ G LG G+  +    P  + A +   +V VS G     A TEDGK
Sbjct: 506 AVTQKGEVYSWGVNEFGALGHGQKYSSFPTPEPIVAFSKLIVVMVSCGKDFCAAVTEDGK 565

Query: 193 LFGWG 197
           L+ WG
Sbjct: 566 LYMWG 570



 Score = 43.9 bits (102), Expect = 0.11,   Method: Composition-based stats.
 Identities = 37/152 (24%), Positives = 67/152 (44%), Gaps = 13/152 (8%)

Query: 54  YEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRV 113
           +E  ++  +P     V    Y  LAVT  G V++WG N    LG G  +  +++  P+ +
Sbjct: 484 FEEKQMMNVPMKSVDVYDETY--LAVTQKGEVYSWGVNEFGALGHG--QKYSSFPTPEPI 539

Query: 114 EGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEK 173
               ++ V          +A+ +DG L++WGK       +         P  V++++   
Sbjct: 540 VAFSKLIVVMVSCGKDFCAAVTEDGKLYMWGK-------ILHSSNCCYTPELVKSISEWH 592

Query: 174 IVKVSFG--WGHALAQTEDGKLFGWGYSADGR 203
           + KVS G    + LA + +G +F + Y    R
Sbjct: 593 VSKVSCGSSINNTLALSREGYVFSFEYRNSDR 624


>gi|403381060|ref|ZP_10923117.1| regulator of chromosome condensation rcc1, partial [Paenibacillus
           sp. JC66]
          Length = 851

 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 92/347 (26%), Positives = 160/347 (46%), Gaps = 72/347 (20%)

Query: 28  AVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWA 87
           +V SFG G  G LG      G   +   P ++ GL SD+ +++AG  HSLA+T +G V++
Sbjct: 48  SVFSFGMGMYGKLG-----HGDTANQLAPKKIEGL-SDIQAIAAGTNHSLALTKSGDVYS 101

Query: 88  WGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSK 147
           +G     +LG G  +S+    +PK++EGL  +   A  A    S A+   G ++ +G   
Sbjct: 102 FGFGLFGRLGHGNTDSQL---EPKKIEGLSDIQAIA--AGDFHSLALTKSGDVYSFG--- 153

Query: 148 RGQLGLGKDITE-AIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGN 206
            G  GLG   TE    P ++E+L+   +  ++ G  H+LA T+ G ++ +G+   GR+G+
Sbjct: 154 NGTSGLGHGNTEDQSTPKKIESLS--DVQAIAAGGNHSLALTKSGDVYSFGFGLFGRLGH 211

Query: 207 LGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEV 266
                             ++D ++    IE    + +                       
Sbjct: 212 -----------------GDTDSQLEPKKIEDLSDIQA----------------------- 231

Query: 267 VDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDI-NFHPV-SISSGLGHS 324
             IA G +HSL L ++G + S G  ++GQLG    +  + P  I +   + ++++G  HS
Sbjct: 232 --IAAGGNHSLALTKSGDVYSFGWGLHGQLGHGDTENQLTPKKIEDLSDIQAVAAGANHS 289

Query: 325 LAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPDN--VPLVVEGLE 369
           LA+ +         +  + S+G   + QLG    D+   P  +EGL+
Sbjct: 290 LALTK---------SGEVYSFGRGNTGQLGHGDTDDQLTPKKIEGLK 327



 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 58/169 (34%), Positives = 92/169 (54%), Gaps = 14/169 (8%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAW 88
           V SFG G  G LG      G      EP ++  L SD+ +++AG  HSLA+T +G V+++
Sbjct: 198 VYSFGFGLFGRLG-----HGDTDSQLEPKKIEDL-SDIQAIAAGGNHSLALTKSGDVYSF 251

Query: 89  GRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKR 148
           G     QLG G  E++ T   PK++E L  +   AA A+   S A+   G ++ +G+   
Sbjct: 252 GWGLHGQLGHGDTENQLT---PKKIEDLSDIQAVAAGANH--SLALTKSGEVYSFGRGNT 306

Query: 149 GQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWG 197
           GQLG G D  + + P ++E L  + I  ++ G  H+LA T+ G ++ +G
Sbjct: 307 GQLGHG-DTDDQLTPKKIEGL--KDIQAIAAGDFHSLALTKSGDVYSFG 352



 Score = 68.2 bits (165), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 55/158 (34%), Positives = 81/158 (51%), Gaps = 15/158 (9%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAW 88
           V SFG G  G LG      G   +   P ++  L SD+ +V+AG  HSLA+T +G V+++
Sbjct: 248 VYSFGWGLHGQLG-----HGDTENQLTPKKIEDL-SDIQAVAAGANHSLALTKSGEVYSF 301

Query: 89  GRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKR 148
           GR N  QLG G  + + T   PK++EGL  +   A  A    S A+   G ++ +G    
Sbjct: 302 GRGNTGQLGHGDTDDQLT---PKKIEGLKDIQAIA--AGDFHSLALTKSGDVYSFGNGTS 356

Query: 149 GQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALA 186
           G LG G D    + P ++E L    I  ++ G  H+LA
Sbjct: 357 G-LGHG-DTANQLEPKKIEGLT--DIQAIAAGANHSLA 390



 Score = 55.5 bits (132), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 38/106 (35%), Positives = 59/106 (55%), Gaps = 10/106 (9%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAW 88
           V SFG G+ G LG      G   D   P ++ GL  D+ +++AG +HSLA+T +G V+++
Sbjct: 298 VYSFGRGNTGQLG-----HGDTDDQLTPKKIEGL-KDIQAIAAGDFHSLALTKSGDVYSF 351

Query: 89  GRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAI 134
           G N    LG G     A   +PK++EGL  +   AA A+  ++ A+
Sbjct: 352 G-NGTSGLGHG---DTANQLEPKKIEGLTDIQAIAAGANHSLALAV 393


>gi|330802866|ref|XP_003289433.1| hypothetical protein DICPUDRAFT_153832 [Dictyostelium purpureum]
 gi|325080475|gb|EGC34029.1| hypothetical protein DICPUDRAFT_153832 [Dictyostelium purpureum]
          Length = 1719

 Score = 90.5 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 65/212 (30%), Positives = 99/212 (46%), Gaps = 24/212 (11%)

Query: 31  SFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPS-DVTSVSAGHYHSLAVTNNGAVWAWG 89
           ++G G  G LG   SL         P +V  L    +  +S G  HS+A+T  G V++WG
Sbjct: 326 TWGRGDNGRLGHGDSLM-----QSTPKQVMSLHGHTIVDMSLGGGHSMALTKRGEVFSWG 380

Query: 90  RNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRG 149
           R    QLG G   S+     PK+++      +    A G  S AI  +GS++ WG+   G
Sbjct: 381 RGENGQLGHGTFTSQQM--TPKQIQAFQNKTIKVISAGGYHSIAIDTNGSMFAWGRGDYG 438

Query: 150 QLGLGK------DITEAIV---------PSRVEALAGEKIVKVSFGWGHALAQTEDGKLF 194
            LG+        DI   ++          +   + AGE+ + VS G+ H +AQTE+G L+
Sbjct: 439 VLGVSSSLDSLGDINSPVLIKSLNNSNGSNNSNSSAGERFINVSSGFQHNVAQTENGDLY 498

Query: 195 GWGYSADGRIGNLGKALESSPLDSNIDRSSES 226
            WG  +  R+G   +  +  P   N DRS+ S
Sbjct: 499 SWGCGSGNRLGLANEENQLIPKKLN-DRSNNS 529



 Score = 77.4 bits (189), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 61/246 (24%), Positives = 106/246 (43%), Gaps = 27/246 (10%)

Query: 66  VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAF 125
           +  +S     S A++  G ++ WGR +  +LG G    ++T   PK+V  L    +    
Sbjct: 305 IIKLSCSTNRSAAISKLGYLYTWGRGDNGRLGHGDSLMQST---PKQVMSLHGHTIVDMS 361

Query: 126 ASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHAL 185
             G  S A+   G ++ WG+ + GQLG G   ++ + P +++A   + I  +S G  H++
Sbjct: 362 LGGGHSMALTKRGEVFSWGRGENGQLGHGTFTSQQMTPKQIQAFQNKTIKVISAGGYHSI 421

Query: 186 AQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEG 245
           A   +G +F WG    G +G       SS LDS  D        I+S  + K+    +  
Sbjct: 422 AIDTNGSMFAWGRGDYGVLG------VSSSLDSLGD--------INSPVLIKSLNNSNGS 467

Query: 246 MEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGM 305
                            G   ++++ GF H++    NG L S G     +LG   ++  +
Sbjct: 468 NNSNS----------SAGERFINVSSGFQHNVAQTENGDLYSWGCGSGNRLGLANEENQL 517

Query: 306 FPVDIN 311
            P  +N
Sbjct: 518 IPKKLN 523



 Score = 58.5 bits (140), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 82/359 (22%), Positives = 144/359 (40%), Gaps = 92/359 (25%)

Query: 52  DAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPK 111
           D  +  R+  L   V  +S G  H+  +T+ G ++ WG     +LG G LES   +++P+
Sbjct: 149 DNEQYERIDFLKEKVVFISTGAIHTSIITDKGHLYTWGDGLLGKLGHGTLES---YSEPR 205

Query: 112 RVEGLD---QVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEA-------- 160
            VE  +    + V +    G  + A+   G+++ +G +   QLGLG +I+ +        
Sbjct: 206 LVEFFETKPSLRVVSVANGGKHTVALTVCGNVYSFGGNDSCQLGLG-NISSSYYSTPQLV 264

Query: 161 -----------------IVPSRVEALAG----------EKIVKVSFGWGHALAQTEDGKL 193
                            I+ +    L            ++I+K+S     + A ++ G L
Sbjct: 265 TFQSPQSLSNSNSSSPIIMSNSTSTLFNKQQQQSSNKIDRIIKLSCSTNRSAAISKLGYL 324

Query: 194 FGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMP 253
           + WG   +GR+G+    ++S+P            +++ S                     
Sbjct: 325 YTWGRGDNGRLGHGDSLMQSTP------------KQVMS--------------------- 351

Query: 254 IIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREK-QDMGMFPVDI-- 310
                  + G  +VD++ G  HS+ L + G + S G    GQLG        M P  I  
Sbjct: 352 -------LHGHTIVDMSLGGGHSMALTKRGEVFSWGRGENGQLGHGTFTSQQMTPKQIQA 404

Query: 311 --NFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWG-WNRSSQLGRMGPDNVPLVVE 366
             N     IS+G  HS+AI     +N +  A G   +G    SS L  +G  N P++++
Sbjct: 405 FQNKTIKVISAGGYHSIAI----DTNGSMFAWGRGDYGVLGVSSSLDSLGDINSPVLIK 459


>gi|159039899|ref|YP_001539152.1| chromosome condensation regulator RCC1 [Salinispora arenicola
           CNS-205]
 gi|157918734|gb|ABW00162.1| regulator of chromosome condensation RCC1 [Salinispora arenicola
           CNS-205]
          Length = 554

 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 97/322 (30%), Positives = 149/322 (46%), Gaps = 54/322 (16%)

Query: 62  LPS--DVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQV 119
           LPS   VT+V+ G  HSLA+T+ G V AWGRN+  QLG G+            V+ ++ V
Sbjct: 85  LPSATTVTAVAGGGDHSLALTSAGTVLAWGRNDHGQLGDGS-----------TVDKVEPV 133

Query: 120 NVCAAFASGVVSSAI--GDD--------GSLWVWGKSKRGQLGLGKDITEAIVPSRVEAL 169
           +V   F +G   +AI  GDD        G++  WG++ RGQLG G  + + + P  V+  
Sbjct: 134 SV--DFPAGTTVTAIAGGDDHNLALTSAGTVLAWGRNHRGQLGDGSTV-DKLEPVSVDFP 190

Query: 170 AGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPL--------DSNID 221
           AG  +  ++ G  H LA T  G +F WG ++ G +G+      ++P+         +   
Sbjct: 191 AGTTVTAIAGGDDHNLAITSTGGVFTWGSNSSGELGDGTTIDRTTPILVGLPGTTVTTTA 250

Query: 222 RSSESDQEISSSTI----EKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSL 277
               S    S+ T+    + +   +  G   ++  P++    L  G  V  IA G DHSL
Sbjct: 251 GGGHSFAVTSADTVHAWGDNSDGQLGNGNNVDQLEPVVVSMPL--GATVTAIAGGNDHSL 308

Query: 278 VLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFHPVSISSGLG-----HSLAICEVRS 332
            L   G LL+ G+N  GQLG         PVD+N    +  + +      HSLA+    S
Sbjct: 309 ALTAAGALLAWGNNDVGQLGNGNTLDQSEPVDVNLPTGTTITAIATRDSDHSLALTAAGS 368

Query: 333 SNVTGGARGIVSWGWNRSSQLG 354
                    +++WG N   +LG
Sbjct: 369 ---------VLAWGENDDGELG 381



 Score = 67.4 bits (163), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 78/295 (26%), Positives = 119/295 (40%), Gaps = 61/295 (20%)

Query: 66  VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAF 125
           V+ V+A    S +   +  + AWG+N+  +LG G   S A  N P  V       V A  
Sbjct: 39  VSPVAAQQEASPSTAASDTILAWGQNDYGELGNG---STAGSNTPVVVSLPSATTVTAVA 95

Query: 126 ASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHAL 185
             G  S A+   G++  WG++  GQLG G  + + + P  V+  AG  +  ++ G  H L
Sbjct: 96  GGGDHSLALTSAGTVLAWGRNDHGQLGDGSTV-DKVEPVSVDFPAGTTVTAIAGGDDHNL 154

Query: 186 AQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEG 245
           A T  G +  WG +  G++G+                          ST++K        
Sbjct: 155 ALTSAGTVLAWGRNHRGQLGD-------------------------GSTVDK-------- 181

Query: 246 MEKEKYMPIIWEPFLVE---GVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQD 302
                      EP  V+   G  V  IA G DH+L +   G + + GSN  G+LG     
Sbjct: 182 ----------LEPVSVDFPAGTTVTAIAGGDDHNLAITSTGGVFTWGSNSSGELGDGTTI 231

Query: 303 MGMFPVDINF--HPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGR 355
               P+ +      V+ ++G GHS A+           A  + +WG N   QLG 
Sbjct: 232 DRTTPILVGLPGTTVTTTAGGGHSFAVTS---------ADTVHAWGDNSDGQLGN 277



 Score = 58.9 bits (141), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 64/246 (26%), Positives = 96/246 (39%), Gaps = 60/246 (24%)

Query: 116 LDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIV 175
           +  V V    A    S +     ++  WG++  G+LG G     +  P  V   +   + 
Sbjct: 34  MQAVTVSPVAAQQEASPSTAASDTILAWGQNDYGELGNGS-TAGSNTPVVVSLPSATTVT 92

Query: 176 KVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTI 235
            V+ G  H+LA T  G +  WG +  G++G+                          ST+
Sbjct: 93  AVAGGGDHSLALTSAGTVLAWGRNDHGQLGD-------------------------GSTV 127

Query: 236 EKAQKLVSEGMEKEKYMPIIWEPFLVE---GVEVVDIACGFDHSLVLGRNGVLLSCGSNV 292
           +K                   EP  V+   G  V  IA G DH+L L   G +L+ G N 
Sbjct: 128 DKV------------------EPVSVDFPAGTTVTAIAGGDDHNLALTSAGTVLAWGRNH 169

Query: 293 YGQLGREKQDMGMFPVDINFHP----VSISSGLGHSLAICEVRSSNVTGGARGIVSWGWN 348
            GQLG       + PV ++F       +I+ G  H+LAI        TG   G+ +WG N
Sbjct: 170 RGQLGDGSTVDKLEPVSVDFPAGTTVTAIAGGDDHNLAITS------TG---GVFTWGSN 220

Query: 349 RSSQLG 354
            S +LG
Sbjct: 221 SSGELG 226



 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 60/200 (30%), Positives = 87/200 (43%), Gaps = 25/200 (12%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAW 88
           V ++G  S G LG  T++     D   P  V GLP    + +AG  HS AVT+   V AW
Sbjct: 214 VFTWGSNSSGELGDGTTI-----DRTTPILV-GLPGTTVTTTAGGGHSFAVTSADTVHAW 267

Query: 89  GRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWV------ 142
           G N++ QLG G             V+ L+ V V     + V + A G+D SL +      
Sbjct: 268 GDNSDGQLGNG-----------NNVDQLEPVVVSMPLGATVTAIAGGNDHSLALTAAGAL 316

Query: 143 --WGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSA 200
             WG +  GQLG G  + ++                 +    H+LA T  G +  WG + 
Sbjct: 317 LAWGNNDVGQLGNGNTLDQSEPVDVNLPTGTTITAIATRDSDHSLALTAAGSVLAWGEND 376

Query: 201 DGRIGNLGKALESSPLDSNI 220
           DG +G+      S P+D N+
Sbjct: 377 DGELGDGSTLDRSEPVDVNL 396


>gi|171915079|ref|ZP_02930549.1| RCC1 repeat domain protein [Verrucomicrobium spinosum DSM 4136]
          Length = 1933

 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 101/334 (30%), Positives = 153/334 (45%), Gaps = 36/334 (10%)

Query: 32  FGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRN 91
           FG+   G LG  T+   V      P +  GL +DV  ++AG  HSLA+ ++G VWA+G N
Sbjct: 235 FGENGVGNLGDGTTTGRV-----SPVQATGL-TDVVDLAAGSLHSLALKSDGTVWAFGAN 288

Query: 92  NEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQL 151
            E QLG G    R T     +V  L   +V A  A+G  S A+  DG++W +G ++ GQL
Sbjct: 289 FEGQLGDGTNTMRLT---AVQVSAL--TDVVAIAAAGRHSLALKSDGTVWAFGANEAGQL 343

Query: 152 GLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKAL 211
           G G   T    P +V  L G  +V ++ G  H+LA   DG ++ +G +  G++G+     
Sbjct: 344 GDGT-TTSRNAPVQVSGLTG--VVAIAAGGAHSLALKADGTVWAFGANTYGQLGDGSLTA 400

Query: 212 ESSPLDSNIDRSSESDQEISSSTIEKAQKLV-----SEGMEKEKYMPIIWE-PFLVEGVE 265
            + P++  I   +        S + KA   +     S G       P   + P  V GV 
Sbjct: 401 GTVPVEMAITDVAAIAAGAEHSVLMKADGTLWGVGYSAGGRLGGASPSPRKLPMPVSGVT 460

Query: 266 VV-DIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFHPVSISS----G 320
            V  +  G D++ V+  NG +L  G N  GQLG    + G+ P  +   P  +S     G
Sbjct: 461 TVATLKAGGDNTGVVRGNGAVLGFGYNHAGQLG----NGGVLPSSVPVQPTGLSGVRDVG 516

Query: 321 LGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLG 354
           +G++  +       V        S+G N   QLG
Sbjct: 517 VGYNHTVVAKTDGTV-------WSYGLNSLGQLG 543



 Score = 82.0 bits (201), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 89/322 (27%), Positives = 138/322 (42%), Gaps = 70/322 (21%)

Query: 54  YEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRV 113
           + PT+V  L      V+AG  H+L +  +G VW +G N    LG G    R +   P + 
Sbjct: 201 WSPTQVGALSGVTADVAAGDLHTLVLKTDGTVWGFGENGVGNLGDGTTTGRVS---PVQA 257

Query: 114 EGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEK 173
            GL  V   A  A  + S A+  DG++W +G +  GQLG G + T  +   +V AL    
Sbjct: 258 TGLTDVVDLA--AGSLHSLALKSDGTVWAFGANFEGQLGDGTN-TMRLTAVQVSAL--TD 312

Query: 174 IVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSS 233
           +V ++    H+LA   DG ++ +G +  G++G                            
Sbjct: 313 VVAIAAAGRHSLALKSDGTVWAFGANEAGQLG---------------------------- 344

Query: 234 TIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVE-VVDIACGFDHSLVLGRNGVLLSCGSNV 292
                     +G    +  P+      V G+  VV IA G  HSL L  +G + + G+N 
Sbjct: 345 ----------DGTTTSRNAPV-----QVSGLTGVVAIAAGGAHSLALKADGTVWAFGANT 389

Query: 293 YGQLGREKQDMGMFPVDINFHPV-SISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSS 351
           YGQLG      G  PV++    V +I++G  HS+ +           A G + WG   S+
Sbjct: 390 YGQLGDGSLTAGTVPVEMAITDVAAIAAGAEHSVLMK----------ADGTL-WGVGYSA 438

Query: 352 QLGRMG-----PDNVPLVVEGL 368
             GR+G     P  +P+ V G+
Sbjct: 439 G-GRLGGASPSPRKLPMPVSGV 459



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 87/307 (28%), Positives = 133/307 (43%), Gaps = 61/307 (19%)

Query: 68  SVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFAS 127
           +++AGH H++    +G VW  G     QLG     S A    P +   L  V VC   A 
Sbjct: 113 NLAAGHAHTVVAREDGTVWGVGAAELGQLGVSLTGSSAL---PVQAGSLTDV-VCVT-AG 167

Query: 128 GVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQ 187
              ++A+  DG+LW++G +  GQLGLG        P++V AL+G     V+ G  H L  
Sbjct: 168 AAHTAAVRSDGTLWMYGLNTFGQLGLGYASVSVWSPTQVGALSG-VTADVAAGDLHTLVL 226

Query: 188 TEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGME 247
             DG +  WG+  +G +GNLG                        +T  +   + + G+ 
Sbjct: 227 KTDGTV--WGFGENG-VGNLGDG----------------------TTTGRVSPVQATGL- 260

Query: 248 KEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFP 307
                            +VVD+A G  HSL L  +G + + G+N  GQLG     M +  
Sbjct: 261 ----------------TDVVDLAAGSLHSLALKSDGTVWAFGANFEGQLGDGTNTMRLTA 304

Query: 308 VDIN--FHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQL--GRMGPDNVPL 363
           V ++     V+I++   HSLA+   +S         + ++G N + QL  G     N P+
Sbjct: 305 VQVSALTDVVAIAAAGRHSLAL---KSDGT------VWAFGANEAGQLGDGTTTSRNAPV 355

Query: 364 VVEGLEG 370
            V GL G
Sbjct: 356 QVSGLTG 362



 Score = 75.9 bits (185), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 89/339 (26%), Positives = 143/339 (42%), Gaps = 71/339 (20%)

Query: 31  SFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGR 90
           S+G  S G LG+       G     P +V  L SD  +V+ G+  SL +  +G VW +G 
Sbjct: 533 SYGLNSLGQLGVT-----AGASQLTPVQVTAL-SDAKAVAVGYDFSLVLKTDGTVWGFGS 586

Query: 91  NNEVQLGRGAL-ESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRG 149
           N    LG G    SRAT   P +V G   V++ A  A    S+ +  DG++W +G +  G
Sbjct: 587 NTNGTLGDGTFVSSRAT---PAQVSG--TVDITAVAAGRGHSALLKSDGTVWTFGGNTYG 641

Query: 150 QLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGK 209
           QLG G   T    P +   L G   V V+ G  H +    DG ++ +G +A G++G+   
Sbjct: 642 QLGDGT-TTSRYAPVQATGLTGA--VAVAAGGRHTVVLKGDGTVWAFGGNASGQLGD--- 695

Query: 210 ALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDI 269
                                  +T  +   +   G+                   VV I
Sbjct: 696 ----------------------GTTTTRLTAVQMSGL-----------------TNVVAI 716

Query: 270 ACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDIN--FHPVSISSGLGHSLAI 327
           A G +H++ +  +G + + G N  GQLG       +  V +    H +++++G GH+LA+
Sbjct: 717 AVGEEHTVAVRSDGTVWAAGKNASGQLGDGTVTDRLTAVQVPGVTHALAVAAGRGHTLAL 776

Query: 328 CEVRSSNVTGGARGIVSWGWNRSSQLGRMG---PDNVPL 363
                  + G    ++SWG     QL   G   P ++P+
Sbjct: 777 ------KIDG---TLLSWGAGEQGQLREFGTGVPVSLPV 806



 Score = 72.4 bits (176), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 65/192 (33%), Positives = 91/192 (47%), Gaps = 21/192 (10%)

Query: 31  SFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGR 90
           +FG  + G LG  T+ +      Y P +  GL   V +V+AG  H++ +  +G VWA+G 
Sbjct: 634 TFGGNTYGQLGDGTTTS-----RYAPVQATGLTGAV-AVAAGGRHTVVLKGDGTVWAFGG 687

Query: 91  NNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQ 150
           N   QLG G   +R T     ++ GL  V   A      V  A+  DG++W  GK+  GQ
Sbjct: 688 NASGQLGDGTTTTRLT---AVQMSGLTNVVAIAVGEEHTV--AVRSDGTVWAAGKNASGQ 742

Query: 151 LGLGK---DITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNL 207
           LG G     +T   VP    ALA      V+ G GH LA   DG L  WG    G++   
Sbjct: 743 LGDGTVTDRLTAVQVPGVTHALA------VAAGRGHTLALKIDGTLLSWGAGEQGQLREF 796

Query: 208 GKALESS-PLDS 218
           G  +  S P++S
Sbjct: 797 GTGVPVSLPVNS 808



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 81/310 (26%), Positives = 135/310 (43%), Gaps = 61/310 (19%)

Query: 49  VGGDAYEPTRVPGLPSDVTSVS---AGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRA 105
           +GG +  P ++P   S VT+V+   AG  ++  V  NGAV  +G N+  QLG G +   +
Sbjct: 442 LGGASPSPRKLPMPVSGVTTVATLKAGGDNTGVVRGNGAVLGFGYNHAGQLGNGGVLPSS 501

Query: 106 TWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSR 165
               P  + G+  V V   +   VV+     DG++W +G +  GQLG+    ++ + P +
Sbjct: 502 VPVQPTGLSGVRDVGV--GYNHTVVAKT---DGTVWSYGLNSLGQLGVTAGASQ-LTPVQ 555

Query: 166 VEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSE 225
           V AL+  K V V  G+  +L    DG ++G+G + +G +G           D     S  
Sbjct: 556 VTALSDAKAVAV--GYDFSLVLKTDGTVWGFGSNTNGTLG-----------DGTFVSSRA 602

Query: 226 SDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVL 285
           +  ++S +                              V++  +A G  HS +L  +G +
Sbjct: 603 TPAQVSGT------------------------------VDITAVAAGRGHSALLKSDGTV 632

Query: 286 LSCGSNVYGQLGREKQDMGMFPVDINFHPVSISSGLGHSLAICE-VRSSNVTGGARGIVS 344
            + G N YGQLG         PV         ++GL  ++A+    R + V  G   + +
Sbjct: 633 WTFGGNTYGQLGDGTTTSRYAPVQ--------ATGLTGAVAVAAGGRHTVVLKGDGTVWA 684

Query: 345 WGWNRSSQLG 354
           +G N S QLG
Sbjct: 685 FGGNASGQLG 694



 Score = 49.3 bits (116), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 44/141 (31%), Positives = 70/141 (49%), Gaps = 11/141 (7%)

Query: 15  LTSRIFMRSASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLP----SDVTSVS 70
           LT  + + +     VV  GDG+  A G   + +G  GD    TR+  +     ++V +++
Sbjct: 660 LTGAVAVAAGGRHTVVLKGDGTVWAFG--GNASGQLGDGTTTTRLTAVQMSGLTNVVAIA 717

Query: 71  AGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVV 130
            G  H++AV ++G VWA G+N   QLG G +  R T     +V G+      AA     +
Sbjct: 718 VGEEHTVAVRSDGTVWAAGKNASGQLGDGTVTDRLT---AVQVPGVTHALAVAAGRGHTL 774

Query: 131 SSAIGDDGSLWVWGKSKRGQL 151
           +  I  DG+L  WG  ++GQL
Sbjct: 775 ALKI--DGTLLSWGAGEQGQL 793


>gi|194748527|ref|XP_001956696.1| GF24453 [Drosophila ananassae]
 gi|190623978|gb|EDV39502.1| GF24453 [Drosophila ananassae]
          Length = 1058

 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 84/294 (28%), Positives = 131/294 (44%), Gaps = 58/294 (19%)

Query: 24  ASGTAVVSFGDGSQGALGLPTSLTGVGGDAYE----PTRVPGLP-SDVTSVSAGHYHSLA 78
            +GT +  +G+ S G LGL       GG   E    P++VP  P S +  V+ GH H+L 
Sbjct: 2   TAGTELYCWGNTSHGQLGL-------GGIEDEQILTPSQVPWTPDSAIKQVACGHRHTLF 54

Query: 79  VTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRV-EGLDQVNVCAAFASGVVSSAIGDD 137
           +T++G V+A G N+  QLG      R     P  + E LD V V  A  S   S A+ + 
Sbjct: 55  LTSSGRVYACGSNDHSQLGHDLPTKR-----PLLIPELLDYVVVQIACGSR-HSMALSEW 108

Query: 138 GSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWG 197
           G +  WG +  GQLG   D     +P  V  L  + +V+++ G  H+LA T  G+L+ WG
Sbjct: 109 GQVLSWGDNDCGQLGQATDQDIVQLPKIVRQLVSKTVVQIACGNNHSLALTSCGELYSWG 168

Query: 198 YSADGRIG-NLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIW 256
            +  G++G N  K +            + S+Q +  +T+                     
Sbjct: 169 SNIYGQLGVNTPKEV------------THSNQPVRLTTL--------------------- 195

Query: 257 EPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDI 310
                 G+ V  IACG +HS ++ ++  +   G N  GQLG   +    +P  +
Sbjct: 196 -----LGIPVAAIACGGNHSFIISKSSAVFGWGRNNCGQLGLNDETSRSYPTQL 244



 Score = 65.1 bits (157), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 76/285 (26%), Positives = 119/285 (41%), Gaps = 63/285 (22%)

Query: 79  VTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRV-----EGLDQVNVCAAFASGVVSSA 133
           +T    ++ WG  +  QLG G +E       P +V       + QV  C    +  ++S+
Sbjct: 1   MTAGTELYCWGNTSHGQLGLGGIEDEQILT-PSQVPWTPDSAIKQV-ACGHRHTLFLTSS 58

Query: 134 IGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKL 193
               G ++  G +   QLG   D+     P  +  L    +V+++ G  H++A +E G++
Sbjct: 59  ----GRVYACGSNDHSQLG--HDLPTK-RPLLIPELLDYVVVQIACGSRHSMALSEWGQV 111

Query: 194 FGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMP 253
             WG   D   G LG+A               +DQ+I      +  K+V + + K     
Sbjct: 112 LSWG---DNDCGQLGQA---------------TDQDIV-----QLPKIVRQLVSKT---- 144

Query: 254 IIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINF- 312
                       VV IACG +HSL L   G L S GSN+YGQLG         P ++   
Sbjct: 145 ------------VVQIACGNNHSLALTSCGELYSWGSNIYGQLGVNT------PKEVTHS 186

Query: 313 -HPVSISSGLGHSLA--ICEVRSSNVTGGARGIVSWGWNRSSQLG 354
             PV +++ LG  +A   C    S +   +  +  WG N   QLG
Sbjct: 187 NQPVRLTTLLGIPVAAIACGGNHSFIISKSSAVFGWGRNNCGQLG 231



 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 56/179 (31%), Positives = 87/179 (48%), Gaps = 6/179 (3%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSD-VTSVSAGHYHSLAVTNNGAVWA 87
           V+S+GD   G LG  T    V      P  V  L S  V  ++ G+ HSLA+T+ G +++
Sbjct: 111 VLSWGDNDCGQLGQATDQDIVQ----LPKIVRQLVSKTVVQIACGNNHSLALTSCGELYS 166

Query: 88  WGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSK 147
           WG N   QLG    +     N P R+  L  + V A    G  S  I    +++ WG++ 
Sbjct: 167 WGSNIYGQLGVNTPKEVTHSNQPVRLTTLLGIPVAAIACGGNHSFIISKSSAVFGWGRNN 226

Query: 148 RGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGN 206
            GQLGL  D T    P++++ L    +  V+ G   ++  T +G +F  G  A G++G+
Sbjct: 227 CGQLGLN-DETSRSYPTQLKTLRTLGVRFVACGDEFSVFLTNEGGVFTCGAGAYGQLGH 284



 Score = 55.1 bits (131), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 66/228 (28%), Positives = 92/228 (40%), Gaps = 57/228 (25%)

Query: 140 LWVWGKSKRGQLGLGKDITEAIV-PSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGY 198
           L+ WG +  GQLGLG    E I+ PS+V       I +V+ G  H L  T  G+++  G 
Sbjct: 7   LYCWGNTSHGQLGLGGIEDEQILTPSQVPWTPDSAIKQVACGHRHTLFLTSSGRVYACGS 66

Query: 199 SADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEP 258
           +   ++G+          D    R                              P++  P
Sbjct: 67  NDHSQLGH----------DLPTKR------------------------------PLLI-P 85

Query: 259 FLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGR-EKQDMGMFPVD----INFH 313
            L++ V VV IACG  HS+ L   G +LS G N  GQLG+   QD+   P      ++  
Sbjct: 86  ELLDYV-VVQIACGSRHSMALSEWGQVLSWGDNDCGQLGQATDQDIVQLPKIVRQLVSKT 144

Query: 314 PVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPDNV 361
            V I+ G  HSLA+              + SWG N   QLG   P  V
Sbjct: 145 VVQIACGNNHSLAL---------TSCGELYSWGSNIYGQLGVNTPKEV 183



 Score = 46.6 bits (109), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 38/133 (28%), Positives = 65/133 (48%), Gaps = 23/133 (17%)

Query: 245 GMEKEKYMP---IIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGRE-- 299
           G+E E+ +    + W P       +  +ACG  H+L L  +G + +CGSN + QLG +  
Sbjct: 22  GIEDEQILTPSQVPWTP----DSAIKQVACGHRHTLFLTSSGRVYACGSNDHSQLGHDLP 77

Query: 300 -KQDMGMFPVDINFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGP 358
            K+ + + P  +++  V I+ G  HS+A+ E            ++SWG N   QLG+   
Sbjct: 78  TKRPL-LIPELLDYVVVQIACGSRHSMALSEWGQ---------VLSWGDNDCGQLGQATD 127

Query: 359 DNV---PLVVEGL 368
            ++   P +V  L
Sbjct: 128 QDIVQLPKIVRQL 140


>gi|432863737|ref|XP_004070157.1| PREDICTED: E3 ISG15--protein ligase HERC5-like [Oryzias latipes]
          Length = 892

 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 86/295 (29%), Positives = 128/295 (43%), Gaps = 60/295 (20%)

Query: 39  ALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGR 98
           AL LP  L           R+P     V+ V+ G  H++A+T  G V+ WG+N+  QLG 
Sbjct: 104 ALYLPRMLEAF-------CRIP-----VSQVACGSRHTVALTKEGQVYTWGQNSRGQLGL 151

Query: 99  GALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDIT 158
           G  +   + + P+ V  L  + +    A G  S A+   GS++ WG++  GQLGLG D  
Sbjct: 152 G--KKGCSISSPQCVRSLSGMPLVQVSAGGDHSFALSVSGSVFGWGRNDCGQLGLG-DSQ 208

Query: 159 EAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDS 218
           +   P+ V++L  +K   +S G  H    T+ G +F +G    G+ G LG          
Sbjct: 209 DRCTPTSVDSLNLKKTTSISCGKDHTAILTKHGTVFTFG---SGQFGQLGH--------- 256

Query: 219 NIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLV 278
                       +SS  E   +LV+E          +W      G +V  IACG  H+LV
Sbjct: 257 ------------NSSRNELRPRLVAE----------LW------GAKVTRIACGRYHTLV 288

Query: 279 LGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFHPVSISSGLGHSLAICEVRSS 333
           L  N  + S G N   QLGR        P+     PV +      SL   E++ +
Sbjct: 289 LQENNKIYSFGCNDQNQLGRSNDSHPSVPL-----PVLLPQVYKCSLLYREIQRT 338



 Score = 72.0 bits (175), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 62/226 (27%), Positives = 106/226 (46%), Gaps = 22/226 (9%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTR-VPGLPSDVTSVSAGHYHSLAVTNNGAVWA 87
           V ++G  S+G LGL     G    + +  R + G+P  +  VSAG  HS A++ +G+V+ 
Sbjct: 138 VYTWGQNSRGQLGLGKK--GCSISSPQCVRSLSGMP--LVQVSAGGDHSFALSVSGSVFG 193

Query: 88  WGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSK 147
           WGRN+  QLG G  + R T   P  V+ L+     +       ++ +   G+++ +G  +
Sbjct: 194 WGRNDCGQLGLGDSQDRCT---PTSVDSLNLKKTTSISCGKDHTAILTKHGTVFTFGSGQ 250

Query: 148 RGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGN- 206
            GQLG      E + P  V  L G K+ +++ G  H L   E+ K++ +G +   ++G  
Sbjct: 251 FGQLGHNSSRNE-LRPRLVAELWGAKVTRIACGRYHTLVLQENNKIYSFGCNDQNQLGRS 309

Query: 207 ------------LGKALESSPLDSNIDRSSESDQEISSSTIEKAQK 240
                       L +  + S L   I R+  S   ++ S +EK  K
Sbjct: 310 NDSHPSVPLPVLLPQVYKCSLLYREIQRTFSSASCLNRSFLEKKDK 355


>gi|355694501|gb|AER99690.1| hect domain and RLD 5 [Mustela putorius furo]
          Length = 675

 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 81/283 (28%), Positives = 125/283 (44%), Gaps = 51/283 (18%)

Query: 66  VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAF 125
           +  ++ G YHSLA++  G ++AWG+N   QLG G L   A+   P+ VE L  V +    
Sbjct: 49  IIQITCGDYHSLALSKGGELFAWGQNLHGQLGIGRL--FASIPTPQLVEHLSGVPLVQIS 106

Query: 126 ASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHAL 185
           A    S A+   G+++ WG++  GQLGLG    E   PS VEAL  +K+  ++ G  H  
Sbjct: 107 AGKAHSMALSMSGNIYSWGRNDLGQLGLGHTDGEEF-PSLVEALDSQKVEFLACGGSHTA 165

Query: 186 AQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEG 245
             TEDG++F +G    G++G+                        +S+  E   +LV+E 
Sbjct: 166 LLTEDGQVFTFGAGKHGQLGH------------------------NSTQNELRPRLVTE- 200

Query: 246 MEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRN-GVLLSCGSNVYGQLGREKQDMG 304
                          + G+ V  +ACG  H+L    + G + S GS   GQLG       
Sbjct: 201 ---------------LTGIRVTQVACGRRHTLAYVSDLGKVFSFGSGKEGQLGNGGTHNQ 245

Query: 305 MFPVDINFHPVSISSG--LGHSLAICEVRSSNVTGGARGIVSW 345
           + P+     P+ + S   L       E     + GG + I+ W
Sbjct: 246 LIPL-----PMKLPSNEDLKFESRTSEKELIMIAGGNQSILLW 283



 Score = 44.3 bits (103), Expect = 0.086,   Method: Compositional matrix adjust.
 Identities = 37/120 (30%), Positives = 58/120 (48%), Gaps = 16/120 (13%)

Query: 260 LVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFH-----P 314
           +++   ++ I CG  HSL L + G L + G N++GQLG  +    +    +  H      
Sbjct: 43  ILQEKSIIQITCGDYHSLALSKGGELFAWGQNLHGQLGIGRLFASIPTPQLVEHLSGVPL 102

Query: 315 VSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPD--NVPLVVEGLEGES 372
           V IS+G  HS+A+      +++G    I SWG N   QLG    D    P +VE L+ + 
Sbjct: 103 VQISAGKAHSMAL------SMSG---NIYSWGRNDLGQLGLGHTDGEEFPSLVEALDSQK 153



 Score = 44.3 bits (103), Expect = 0.098,   Method: Compositional matrix adjust.
 Identities = 39/149 (26%), Positives = 63/149 (42%), Gaps = 40/149 (26%)

Query: 160 AIVPSRVEALAGEK-IVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDS 218
           +I  +R + +  EK I++++ G  H+LA ++ G+LF WG +  G++G +G+   S P   
Sbjct: 34  SIEHARFQCILQEKSIIQITCGDYHSLALSKGGELFAWGQNLHGQLG-IGRLFASIPTPQ 92

Query: 219 NIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLV 278
            ++  S                                      GV +V I+ G  HS+ 
Sbjct: 93  LVEHLS--------------------------------------GVPLVQISAGKAHSMA 114

Query: 279 LGRNGVLLSCGSNVYGQLGREKQDMGMFP 307
           L  +G + S G N  GQLG    D   FP
Sbjct: 115 LSMSGNIYSWGRNDLGQLGLGHTDGEEFP 143


>gi|281211994|gb|EFA86155.1| regulator of chromosome condensation domain-containing protein
           [Polysphondylium pallidum PN500]
          Length = 537

 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 87/358 (24%), Positives = 153/358 (42%), Gaps = 55/358 (15%)

Query: 32  FGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSD--VTSVSAGHYHSLAVTNNGAVWAWG 89
           FG  +   LGL T       D   PT+V  LP    + S  +    S  +T +  ++ WG
Sbjct: 70  FGSCNDAKLGLATD-----HDKLLPTKVTHLPHRLRIKSAQSTWQTSCILTEDNQLFMWG 124

Query: 90  RNNEVQLG--RGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDD--------GS 139
            N+  Q+G  +  +    T +D  ++  +DQV++  +F   + S+ + ++        G 
Sbjct: 125 TNSAGQMGLPQNQIFKFPTLSDMFKMIDIDQVHLGRSFTLILTSNKLLNNSFNKSEEQGK 184

Query: 140 LWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYS 199
           L   G +  GQLGLG+ +  +  P  VE L  +++V +  G+ H++A T+ G  FGWGY+
Sbjct: 185 LLSVGSNDFGQLGLGEGMRGSSTPRVVEKLNNQELVSIGAGFDHSMAVTKSGHTFGWGYN 244

Query: 200 ADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPF 259
            +G+IG   + +E   ++S  +     +  ++         LV E               
Sbjct: 245 VEGQIGQ--RIVEYKRVESAGENVDSMENSMTPDAEYNIPTLVPE--------------- 287

Query: 260 LVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMF--PVDINF--HPV 315
            +E ++V  + CG+D S ++   G + + G+N  G LG     +G    P  +       
Sbjct: 288 -MESIKVAKVYCGYDCSFLVSARGNVYAMGNNETGTLGVGDDKLGRVTKPTKVAMPEKVK 346

Query: 316 SISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLG-------RMGPDNVPLVVE 366
            +S G  H+L + E         +  + S GW    +LG       R  P  +P   E
Sbjct: 347 QLSCGATHTLFLAE---------SGRVYSCGWGSEGRLGLGDNTTNRYVPTLIPFFHE 395



 Score = 80.5 bits (197), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 81/346 (23%), Positives = 145/346 (41%), Gaps = 68/346 (19%)

Query: 13  NVLTSRIFMRSASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPS-DVTSVSA 71
           N L +  F +S     ++S G    G LGL   + G    +  P  V  L + ++ S+ A
Sbjct: 169 NKLLNNSFNKSEEQGKLLSVGSNDFGQLGLGEGMRG----SSTPRVVEKLNNQELVSIGA 224

Query: 72  GHYHSLAVTNNGAVWAWGRNNEVQLGRGALESR-------------------ATWNDPKR 112
           G  HS+AVT +G  + WG N E Q+G+  +E +                   A +N P  
Sbjct: 225 GFDHSMAVTKSGHTFGWGYNVEGQIGQRIVEYKRVESAGENVDSMENSMTPDAEYNIPTL 284

Query: 113 VEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKD-ITEAIVPSRVEALAG 171
           V  ++ + V   +     S  +   G+++  G ++ G LG+G D +     P++V     
Sbjct: 285 VPEMESIKVAKVYCGYDCSFLVSARGNVYAMGNNETGTLGVGDDKLGRVTKPTKVAM--P 342

Query: 172 EKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEIS 231
           EK+ ++S G  H L   E G+++  G+ ++GR+G LG        D+  +R         
Sbjct: 343 EKVKQLSCGATHTLFLAESGRVYSCGWGSEGRLG-LG--------DNTTNR--------- 384

Query: 232 SSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSN 291
                              Y+P +   F   G+ V  ++ G  HS+VL   G + + G  
Sbjct: 385 -------------------YVPTLIPFFHENGIRVTQVSAGGAHSMVLTDEGQVYTWGCG 425

Query: 292 VYGQLGREKQDMGMFPVDI----NFHPVSISSGLGHSLAICEVRSS 333
             G+LG   +     P  +      + + I++G+  S+  C + ++
Sbjct: 426 ENGKLGHNSETNSNIPQLVKSLAKRNAILIAAGIDTSMVRCSIATT 471


>gi|115485835|ref|NP_001068061.1| Os11g0545800 [Oryza sativa Japonica Group]
 gi|113645283|dbj|BAF28424.1| Os11g0545800, partial [Oryza sativa Japonica Group]
          Length = 400

 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 89/292 (30%), Positives = 142/292 (48%), Gaps = 36/292 (12%)

Query: 79  VTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDG 138
           +T +G V+A G N+  QLG G+  + +   +P  V G D+  V    A    S A+  DG
Sbjct: 63  LTESGRVFAAGLNDFGQLGIGSSVTHSL--EPIEVSGFDE-KVVEVSAGNHHSCAVTADG 119

Query: 139 SLWVWGKSKRGQLGLGKDITEAI-VPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWG 197
            L+ WG++  GQLGLGK   + +  P +V+ LA  ++  V+ G  H++A TE+G++  WG
Sbjct: 120 KLFAWGRNSSGQLGLGKRAGKVVSTPRKVDCLADARVKMVALGSEHSIATTEEGEVLSWG 179

Query: 198 YSADGRIGN------LGKALESSPLDSNIDRSSESDQ-------EISSSTIEKAQKLVSE 244
            +  GR+G+      LG ++ +S     + ++ +  +        + S+ I++   L   
Sbjct: 180 AAGAGRLGHGHKTSILGFSITTSEYTPRLIKNLDGVKIKRIAAGMLHSACIDEKGTLFIF 239

Query: 245 GMEKEKYMPIIWE---PFLVEGVEVVD-IACGFDHSLVLGRNGVLLSCGSNVYGQLGREK 300
           G + EK      +   P +VE V   + +ACG  H+ V+  +G L S GSN  G LG   
Sbjct: 240 GQKTEKGFGRSGDELRPTVVEEVPFSEEVACGGYHTCVVTDSGDLYSWGSNENGCLGLGG 299

Query: 301 QDMGMFP----VDINFHPVS-ISSGLGHSLAICEVRSSNVTGGARGIVSWGW 347
            DM   P      +   PVS +S G  H+  I        +GG   I +WGW
Sbjct: 300 TDMVRSPEVLKSSLFKFPVSKVSCGWKHTAVI--------SGGD--IYTWGW 341



 Score = 88.6 bits (218), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 87/326 (26%), Positives = 138/326 (42%), Gaps = 41/326 (12%)

Query: 38  GALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLG 97
           G LG+ +S+T     + EP  V G    V  VSAG++HS AVT +G ++AWGRN+  QLG
Sbjct: 78  GQLGIGSSVT----HSLEPIEVSGFDEKVVEVSAGNHHSCAVTADGKLFAWGRNSSGQLG 133

Query: 98  RGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKD- 156
            G    +   + P++V+ L    V         S A  ++G +  WG +  G+LG G   
Sbjct: 134 LGKRAGKVV-STPRKVDCLADARVKMVALGSEHSIATTEEGEVLSWGAAGAGRLGHGHKT 192

Query: 157 -------ITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGK 209
                   T    P  ++ L G KI +++ G  H+    E G LF +G   +   G  G 
Sbjct: 193 SILGFSITTSEYTPRLIKNLDGVKIKRIAAGMLHSACIDEKGTLFIFGQKTEKGFGRSGD 252

Query: 210 ALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYM----------PIIWEPF 259
            L  + ++        +     +  +  +  L S G  +   +          P + +  
Sbjct: 253 ELRPTVVEEVPFSEEVACGGYHTCVVTDSGDLYSWGSNENGCLGLGGTDMVRSPEVLKSS 312

Query: 260 LVEGVEVVDIACGFDHSLVL-----------GRNGVLLSCGSNVYGQLGREKQDMGMF-P 307
           L +   V  ++CG+ H+ V+           G NG     G +  GQLG    D+  F P
Sbjct: 313 LFK-FPVSKVSCGWKHTAVISGGDIYTWGWGGANGTFFEEGHSSGGQLGH-GNDVDYFEP 370

Query: 308 VDINF----HPVSISSGLGHSLAICE 329
           + + F      V +S G  H+ AI E
Sbjct: 371 MMVEFGKNARAVHVSCGFNHTGAIFE 396


>gi|219125443|ref|XP_002182991.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217405785|gb|EEC45727.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 341

 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 83/286 (29%), Positives = 131/286 (45%), Gaps = 27/286 (9%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSD-VTSVSAGHYHSLAVTNNGAVWA 87
           V ++G G  G LG      G  G  Y P     L    V  V+ G YH+ AVT NG ++ 
Sbjct: 54  VFTWGRGDDGRLG-----HGDNGWKYVPRMTQSLAGQIVLQVTCGSYHTAAVTGNGDLYT 108

Query: 88  WGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAI-GDDGSLWVWGKS 146
           WG     +LG G     AT   PKRVE L    V A  A G   +AI    G+L+ WG  
Sbjct: 109 WGGGMYGKLGHGDEAGHAT---PKRVEALVGATV-AQIACGSRHTAIVTASGALYTWGDK 164

Query: 147 KRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGN 206
           + G  G G+      +P  +E++A +++ ++S    H    T+ G+LF WG    GR+G+
Sbjct: 165 ENGVAGHGETEGHQYLPRLLESMAAKRVAQISACGFHTAIVTDAGELFTWGEGKFGRLGH 224

Query: 207 LGKALESSP--LDSNIDRSSE--SDQEISSSTIEKAQKLVSEGMEKE----------KYM 252
           + +    SP  +D  + +     S     ++ + +  +L + G  +           K  
Sbjct: 225 MSERNCHSPTIVDYMVGKKPRQVSCGGFHTAVVSEDGRLYTFGGGEHGQLGHNDRVNKMT 284

Query: 253 PIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGR 298
           P   E   ++G+ V  I CG+ HS+ L   G++ + G+  +G+LG 
Sbjct: 285 PTFVEA--LDGMFVSQITCGWSHSVALTVKGLVYTWGNGDHGKLGH 328



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 86/323 (26%), Positives = 139/323 (43%), Gaps = 37/323 (11%)

Query: 28  AVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPS-DVTSVSAGHYHSLAVTNNGAVW 86
           AV ++G G  G LGL     G   D  EPT V  L    V  ++ G  H++ +T +G V+
Sbjct: 1   AVFTWGRGEDGQLGL-----GDTSDQDEPTYVDALRGVGVQQIACGSGHTVVLTTDGEVF 55

Query: 87  AWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKS 146
            WGR ++ +LG G    +     P+  + L    V         ++A+  +G L+ WG  
Sbjct: 56  TWGRGDDGRLGHGDNGWKYV---PRMTQSLAGQIVLQVTCGSYHTAAVTGNGDLYTWGGG 112

Query: 147 KRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGN 206
             G+LG G +   A  P RVEAL G  + +++ G  H    T  G L+ WG   +G  G+
Sbjct: 113 MYGKLGHGDEAGHA-TPKRVEALVGATVAQIACGSRHTAIVTASGALYTWGDKENGVAGH 171

Query: 207 --------LGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEG----------MEK 248
                   L + LES         S+       ++ +  A +L + G           E+
Sbjct: 172 GETEGHQYLPRLLESMAAKRVAQISACG---FHTAIVTDAGELFTWGEGKFGRLGHMSER 228

Query: 249 EKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPV 308
             + P I +  +  G +   ++CG  H+ V+  +G L + G   +GQLG   +   M P 
Sbjct: 229 NCHSPTIVDYMV--GKKPRQVSCGGFHTAVVSEDGRLYTFGGGEHGQLGHNDRVNKMTPT 286

Query: 309 DIN----FHPVSISSGLGHSLAI 327
            +          I+ G  HS+A+
Sbjct: 287 FVEALDGMFVSQITCGWSHSVAL 309



 Score = 68.6 bits (166), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 58/190 (30%), Positives = 95/190 (50%), Gaps = 20/190 (10%)

Query: 23  SASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSD-VTSVSAGHYHSLAVTN 81
           +ASG A+ ++GD   G  G   +     G  Y P  +  + +  V  +SA  +H+  VT+
Sbjct: 153 TASG-ALYTWGDKENGVAGHGETE----GHQYLPRLLESMAAKRVAQISACGFHTAIVTD 207

Query: 82  NGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGL-----DQVNVCAAFASGVVSSAIGD 136
            G ++ WG   E + GR    S    + P  V+ +      QV+ C  F + VVS    +
Sbjct: 208 AGELFTWG---EGKFGRLGHMSERNCHSPTIVDYMVGKKPRQVS-CGGFHTAVVS----E 259

Query: 137 DGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGW 196
           DG L+ +G  + GQLG   D    + P+ VEAL G  + +++ GW H++A T  G ++ W
Sbjct: 260 DGRLYTFGGGEHGQLGH-NDRVNKMTPTFVEALDGMFVSQITCGWSHSVALTVKGLVYTW 318

Query: 197 GYSADGRIGN 206
           G    G++G+
Sbjct: 319 GNGDHGKLGH 328



 Score = 40.8 bits (94), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 45/169 (26%), Positives = 74/169 (43%), Gaps = 12/169 (7%)

Query: 2   RLLKSVVHNHVNVLTSRIFMRSASGTA--VVSFGDGSQGALGLPTSLTGVGGDAYEPTRV 59
           RLL+S+    V  +++  F  +    A  + ++G+G  G LG  +       + + PT V
Sbjct: 182 RLLESMAAKRVAQISACGFHTAIVTDAGELFTWGEGKFGRLGHMSER-----NCHSPTIV 236

Query: 60  PGL-PSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQ 118
             +       VS G +H+  V+ +G ++ +G     QLG     ++ T   P  VE LD 
Sbjct: 237 DYMVGKKPRQVSCGGFHTAVVSEDGRLYTFGGGEHGQLGHNDRVNKMT---PTFVEALDG 293

Query: 119 VNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVE 167
           + V         S A+   G ++ WG    G+LG G    +  VP  VE
Sbjct: 294 MFVSQITCGWSHSVALTVKGLVYTWGNGDHGKLGHGNG-RKVAVPQAVE 341


>gi|211926988|dbj|BAG82722.1| hypothetical protein [uncultured bacterium]
          Length = 782

 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 108/363 (29%), Positives = 155/363 (42%), Gaps = 52/363 (14%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAW 88
           V  +G  S G LG      G   D+  P  VPGL SDV +VSA  +H+ A T  GAV  W
Sbjct: 72  VQCWGRNSSGQLG-----NGSTADSALPITVPGL-SDVVAVSASGFHTCARTEAGAVLCW 125

Query: 89  GRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKR 148
           G N   QLG G  +   +   P  V GL+   V A  A G  + A+ D G++  WG +  
Sbjct: 126 GNNFYGQLGDGTNDDSPS---PVAVVGLES-GVAAISAGGSHTCALTDGGAVKCWGDNSA 181

Query: 149 GQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLG 208
           G +G G    +   P  V+ L    +  +S G GH  A T+ G L  WG++  G++G+  
Sbjct: 182 GAVGDGTG-DDRNSPVDVDGLT-SGVAAISSGGGHTCALTDAGGLKCWGWNFRGQLGDNS 239

Query: 209 KALESSPLD-----SNIDRSSESDQEISSSTIE--------KAQKLVSEGMEKEKYMPII 255
           +   SSP+D     + +   S   Q   +   E         A+  + +G E    +P+ 
Sbjct: 240 EISRSSPVDVAGLSTGVTAVSSGAQHTCALLEEGGVQCWGRNAENQLGDGTENGSLVPVD 299

Query: 256 WEPFLVEGVE-VVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFHP 314
                 +G E    I  G  H+ +   +G +   G N  GQLG +       PVD+    
Sbjct: 300 -----ADGTEDAAGIHAGGFHTCITNADGGIQCWGWNEDGQLGDDSTTDAGAPVDV---- 350

Query: 315 VSISSGLG-------HSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPDNVPLVVEG 367
           V ++SG+        HS A  E           GI  WG N   QLG    D+    V+ 
Sbjct: 351 VGLASGVDEVSLGEEHSCARIE----------DGIQCWGNNNRGQLGDNTDDSRLTPVDV 400

Query: 368 LEG 370
           L+G
Sbjct: 401 LQG 403



 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 100/329 (30%), Positives = 142/329 (43%), Gaps = 36/329 (10%)

Query: 43  PTSLTGVGGDAY-EPTRVPGLP-SDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGA 100
           P SL  + G  Y  P  V   P +D+ + SAG  H+ AVT++G V  WGRN+  QLG G+
Sbjct: 28  PISLRAIDGAPYLSPASVGVDPLTDIATFSAGEQHTCAVTSDGRVQCWGRNSSGQLGNGS 87

Query: 101 LESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEA 160
               A    P  V GL   +V A  ASG  + A  + G++  WG +  GQLG   D T  
Sbjct: 88  TADSAL---PITVPGLS--DVVAVSASGFHTCARTEAGAVLCWGNNFYGQLG---DGTND 139

Query: 161 IVPSRVEALAGEK-IVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSN 219
             PS V  +  E  +  +S G  H  A T+ G +  WG ++ G +G+      +SP+D  
Sbjct: 140 DSPSPVAVVGLESGVAAISAGGSHTCALTDGGAVKCWGDNSAGAVGDGTGDDRNSPVD-- 197

Query: 220 IDRSSESDQEISS-----STIEKAQKLVSEGMEKEKYMPIIWE-----PFLVEGVE--VV 267
           +D  +     ISS       +  A  L   G      +    E     P  V G+   V 
Sbjct: 198 VDGLTSGVAAISSGGGHTCALTDAGGLKCWGWNFRGQLGDNSEISRSSPVDVAGLSTGVT 257

Query: 268 DIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDIN--FHPVSISSGLGHSL 325
            ++ G  H+  L   G +   G N   QLG   ++  + PVD +       I +G  H+ 
Sbjct: 258 AVSSGAQHTCALLEEGGVQCWGRNAENQLGDGTENGSLVPVDADGTEDAAGIHAGGFHTC 317

Query: 326 AICEVRSSNVTGGARGIVSWGWNRSSQLG 354
                    +T    GI  WGWN   QLG
Sbjct: 318 ---------ITNADGGIQCWGWNEDGQLG 337



 Score = 88.6 bits (218), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 96/347 (27%), Positives = 158/347 (45%), Gaps = 40/347 (11%)

Query: 26  GTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAV 85
           G AV  +GD S GA+G      G G D   P  V GL S V ++S+G  H+ A+T+ G +
Sbjct: 170 GGAVKCWGDNSAGAVG-----DGTGDDRNSPVDVDGLTSGVAAISSGGGHTCALTDAGGL 224

Query: 86  WAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGK 145
             WG N   QLG  +  SR++   P  V GL    V A  +    + A+ ++G +  WG+
Sbjct: 225 KCWGWNFRGQLGDNSEISRSS---PVDVAGL-STGVTAVSSGAQHTCALLEEGGVQCWGR 280

Query: 146 SKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIG 205
           +   QLG G +   ++VP  V+A   E    +  G  H      DG +  WG++ DG++G
Sbjct: 281 NAENQLGDGTE-NGSLVP--VDADGTEDAAGIHAGGFHTCITNADGGIQCWGWNEDGQLG 337

Query: 206 NLGKALESSPLD-----SNIDRSSESDQEISSSTIEKAQKL--------VSEGMEKEKYM 252
           +       +P+D     S +D  S   +E S + IE   +         + +  +  +  
Sbjct: 338 DDSTTDAGAPVDVVGLASGVDEVSLG-EEHSCARIEDGIQCWGNNNRGQLGDNTDDSRLT 396

Query: 253 PIIWEPFLVEGVEVV----DIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPV 308
           P+     +++G +V+     +  G  HS  +  +G +L  G N +GQLG    D      
Sbjct: 397 PV----DVLQGGDVLAGISALGAGSTHSCAVTNSGGILCWGGNDFGQLG----DGSTVTS 448

Query: 309 DINFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGR 355
            +     +++SG+  ++   E  +  +T G  G+  WG N   QLG 
Sbjct: 449 TVAVEHSTLTSGIA-AVGAGEDHTCALTDGG-GVKCWGRNSQGQLGN 493



 Score = 87.8 bits (216), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 102/340 (30%), Positives = 157/340 (46%), Gaps = 32/340 (9%)

Query: 28  AVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWA 87
           AV+ +G+   G LG      G   D+  P  V GL S V ++SAG  H+ A+T+ GAV  
Sbjct: 121 AVLCWGNNFYGQLG-----DGTNDDSPSPVAVVGLESGVAAISAGGSHTCALTDGGAVKC 175

Query: 88  WGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSK 147
           WG N+   +G G  + R   N P  V+GL    V A  + G  + A+ D G L  WG + 
Sbjct: 176 WGDNSAGAVGDGTGDDR---NSPVDVDGLTS-GVAAISSGGGHTCALTDAGGLKCWGWNF 231

Query: 148 RGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNL 207
           RGQLG   +I+ +  P  V  L+   +  VS G  H  A  E+G +  WG +A+ ++G+ 
Sbjct: 232 RGQLGDNSEISRS-SPVDVAGLS-TGVTAVSSGAQHTCALLEEGGVQCWGRNAENQLGDG 289

Query: 208 GKALESSPLDSNIDRSSESDQEISS----STIEKAQKLVS------EGMEKEKYMPIIWE 257
            +     P+D++    +E    I +    + I  A   +       +G   +        
Sbjct: 290 TENGSLVPVDAD---GTEDAAGIHAGGFHTCITNADGGIQCWGWNEDGQLGDDSTTDAGA 346

Query: 258 PFLVEGVE--VVDIACGFDHSLVLGRNGVLLSC-GSNVYGQLGREKQDMGMFPVDINFHP 314
           P  V G+   V +++ G +HS     +G+   C G+N  GQLG    D  + PVD+    
Sbjct: 347 PVDVVGLASGVDEVSLGEEHSCARIEDGI--QCWGNNNRGQLGDNTDDSRLTPVDV-LQG 403

Query: 315 VSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLG 354
             + +G+  +L      S  VT  + GI+ WG N   QLG
Sbjct: 404 GDVLAGI-SALGAGSTHSCAVT-NSGGILCWGGNDFGQLG 441



 Score = 81.3 bits (199), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 90/332 (27%), Positives = 139/332 (41%), Gaps = 34/332 (10%)

Query: 52  DAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPK 111
           DA  P  V GL S V  VS G  HS A   +G +  WG NN  QLG    +SR T  D  
Sbjct: 343 DAGAPVDVVGLASGVDEVSLGEEHSCARIEDG-IQCWGNNNRGQLGDNTDDSRLTPVD-- 399

Query: 112 RVEGLDQVNVCAAFASGVV-SSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALA 170
            ++G D +   +A  +G   S A+ + G +  WG +  GQLG G  +T  +        +
Sbjct: 400 VLQGGDVLAGISALGAGSTHSCAVTNSGGILCWGGNDFGQLGDGSTVTSTVAVEHSTLTS 459

Query: 171 GEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESS-PLDSNIDRSSESDQE 229
           G  I  V  G  H  A T+ G +  WG ++ G++GN GK + SS P+D+ +       Q 
Sbjct: 460 G--IAAVGAGEDHTCALTDGGGVKCWGRNSQGQLGN-GKLVNSSEPVDALL-----LSQG 511

Query: 230 ISSSTIEKAQKLV-----------SEGMEK----EKYMPIIWEPFLVEGVEVVDIACGFD 274
           +SS T       V           + G  +     +    + +        V++++ G  
Sbjct: 512 VSSLTTGGNHSCVLLDTGGIRCWGANGTGQLGNGSRSASTVAQSVTGLTSGVINVSAGSS 571

Query: 275 HSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFHPVSISSGLGHSLAICEVRSSN 334
           H+  +  +G +   G N YGQ+G    D    PVD+       ++ +      C +    
Sbjct: 572 HTCAVTSSGAVKCWGWNFYGQVGDGSTDFRTEPVDVVGLGAGAAAVVAGRWHTCAIMDDG 631

Query: 335 VTGGARGIVSWGWNRSSQLGRMGPDNVPLVVE 366
                  +  WG+N   QLG    D+ P  V+
Sbjct: 632 R------VKCWGYNVYGQLGDGTEDDSPTPVD 657



 Score = 70.9 bits (172), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 86/312 (27%), Positives = 139/312 (44%), Gaps = 35/312 (11%)

Query: 66  VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAF 125
           ++++ AG  HS AVTN+G +  WG N+  QLG G     +T      VE     +  AA 
Sbjct: 410 ISALGAGSTHSCAVTNSGGILCWGGNDFGQLGDG-----STVTSTVAVEHSTLTSGIAAV 464

Query: 126 ASGVV-SSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEA-LAGEKIVKVSFGWGH 183
            +G   + A+ D G +  WG++ +GQLG GK +  +     V+A L  + +  ++ G  H
Sbjct: 465 GAGEDHTCALTDGGGVKCWGRNSQGQLGNGKLVNSS---EPVDALLLSQGVSSLTTGGNH 521

Query: 184 ALAQTEDGKLFGWGYSADGRIGNLGKALES-----SPLDS---NIDRSSESDQEISSSTI 235
           +    + G +  WG +  G++GN  ++  +     + L S   N+   S     ++SS  
Sbjct: 522 SCVLLDTGGIRCWGANGTGQLGNGSRSASTVAQSVTGLTSGVINVSAGSSHTCAVTSSGA 581

Query: 236 EKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFD--HSLVLGRNGVLLSCGSNVY 293
            K       G   +       EP  V G+     A      H+  +  +G +   G NVY
Sbjct: 582 VKCWGWNFYGQVGDGSTDFRTEPVDVVGLGAGAAAVVAGRWHTCAIMDDGRVKCWGYNVY 641

Query: 294 GQLGREKQDMGMFPVDINFHPVSISS---GLGHSLAICEVRSSNVTGGARGIVSWGWNRS 350
           GQLG   +D    PVD+   P +++    G  H+ A+ E         + GI+ WG + S
Sbjct: 642 GQLGDGTEDDSPTPVDVVNLPSAVTQVTVGDSHTCALTE---------SDGILCWGLSSS 692

Query: 351 SQLGRMGPDNVP 362
              GR+G D  P
Sbjct: 693 ---GRLGGDPDP 701



 Score = 65.9 bits (159), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 63/197 (31%), Positives = 89/197 (45%), Gaps = 21/197 (10%)

Query: 10  NHVNVLTSRIFMRSASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSV 69
           NH  VL     +R          G+GS+ A  +  S+TG             L S V +V
Sbjct: 520 NHSCVLLDTGGIRCWGANGTGQLGNGSRSASTVAQSVTG-------------LTSGVINV 566

Query: 70  SAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGV 129
           SAG  H+ AVT++GAV  WG N   Q+G G+ + R    D   +       V   +    
Sbjct: 567 SAGSSHTCAVTSSGAVKCWGWNFYGQVGDGSTDFRTEPVDVVGLGAGAAAVVAGRWH--- 623

Query: 130 VSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALA-GEKIVKVSFGWGHALAQT 188
            + AI DDG +  WG +  GQLG   D TE   P+ V+ +     + +V+ G  H  A T
Sbjct: 624 -TCAIMDDGRVKCWGYNVYGQLG---DGTEDDSPTPVDVVNLPSAVTQVTVGDSHTCALT 679

Query: 189 EDGKLFGWGYSADGRIG 205
           E   +  WG S+ GR+G
Sbjct: 680 ESDGILCWGLSSSGRLG 696


>gi|363728661|ref|XP_416780.3| PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC418578
           [Gallus gallus]
          Length = 1212

 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 83/279 (29%), Positives = 125/279 (44%), Gaps = 58/279 (20%)

Query: 27  TAVVS-------FGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVS-AGHYHSLA 78
           TAVV+       FG    G LGL     G      +PT V  L  + T ++  G  H+L 
Sbjct: 51  TAVVTGNGKLYMFGSNDWGQLGL-----GSKNTVRKPTCVKALKPEKTKLAVCGRNHTLV 105

Query: 79  VTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDG 138
            T  G V+A G N+E QLG G  E R T++         ++   A  A    S+A+ +DG
Sbjct: 106 YTEKGNVYAAGGNSEGQLGLGDTEERTTFHLISFFTNQHKIKQLA--AGSYTSAAVTEDG 163

Query: 139 SLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGY 198
            L+VWG +  GQ+GL  D T   VP +V+   G+ +  +S G+ H+   T DG+L+ +G 
Sbjct: 164 QLFVWGDNSEGQIGLA-DKTCVSVPCQVD--VGKPVSSISCGYYHSAFITGDGELYTFGE 220

Query: 199 SADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEP 258
             +G++G L + L++S                                        + +P
Sbjct: 221 PENGKLGLLPEQLKNSR---------------------------------------VPQP 241

Query: 259 FLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLG 297
            L    +V  +ACG +H++VL   GV  + G   YGQLG
Sbjct: 242 VLGIMEKVNKVACGGEHTVVLTETGV-YTFGLGQYGQLG 279



 Score = 62.0 bits (149), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 55/178 (30%), Positives = 85/178 (47%), Gaps = 16/178 (8%)

Query: 33  GDGSQGALGLPTSLTGVGGDAYEPTRVP-GLPSDVTSVSAGHYHSLAVTNNGAVWAWGRN 91
           GD S+G +GL             P +V  G P  V+S+S G+YHS  +T +G ++ +G  
Sbjct: 169 GDNSEGQIGLADKTC-----VSVPCQVDVGKP--VSSISCGYYHSAFITGDGELYTFGEP 221

Query: 92  NEVQLGRGALESRATWNDPKRVEG-LDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQ 150
              +LG    E       P+ V G +++VN     A G   + +  +  ++ +G  + GQ
Sbjct: 222 ENGKLGL-LPEQLKNSRVPQPVLGIMEKVN---KVACGGEHTVVLTETGVYTFGLGQYGQ 277

Query: 151 LGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLG 208
           LG G  + +  VP  V+ L   KI  V+ G  H     E+G +F +G   DGR G LG
Sbjct: 278 LGHGTLLFKTSVPKSVKHLRSHKIHNVTCGESHTAVIAENGLMFTFG---DGRHGKLG 332


>gi|295789061|ref|NP_001171424.1| X-linked retinitis pigmentosa GTPase regulator isoform 5 [Mus
           musculus]
 gi|26332729|dbj|BAC30082.1| unnamed protein product [Mus musculus]
          Length = 557

 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 83/310 (26%), Positives = 149/310 (48%), Gaps = 29/310 (9%)

Query: 32  FGDGSQGALGLPTSLTGVGGDAYEPTRVPGL-PSDVTSVSAGHYHSLAVTNNGAVWAWGR 90
           FG  + G LGL     G      +PT +  L P  V   + G  H+L  T+ G V+A G 
Sbjct: 97  FGSNNWGQLGL-----GSKAAIIKPTCIKALKPEKVKLAACGRNHTLVSTDTGGVYAAGG 151

Query: 91  NNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQ 150
           NNE QLG G  + R T++        D +   +A A+   S+A+ +DG L++WG +  GQ
Sbjct: 152 NNEGQLGLGDTDDRDTFHQIVFFTPADTIKQLSAGAN--TSAALTEDGKLFMWGDNSEGQ 209

Query: 151 LGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKA 210
           +GL +D +   +P   E   G+ I  +S G+ H+   T DG+L+ +G   +G++G   + 
Sbjct: 210 IGL-EDKSNVCIPH--EVTVGKPISWISCGYYHSAFVTMDGELYTFGEPENGKLGLPNEL 266

Query: 211 LESSPLDSNIDRSSESDQEISS---STIEKAQKLV-SEGMEKE------KYMPIIWEPFL 260
           L +      +    E   +++     T+   +K+V + G+ +        ++    EP +
Sbjct: 267 LMNHRSPQRVLGIPERVIQVACGGGHTVVLTEKVVYAFGLGQFGQLGLGTFLFETSEPKI 326

Query: 261 VEGV---EVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFHPVSI 317
           +E +   ++  I+CG +H+ ++   G+L + G   +G+LG     +GM      F P   
Sbjct: 327 IERIKDQKICHISCGENHTALMTELGLLYTFGDGRHGKLG-----LGMENFTNQFFPTLC 381

Query: 318 SSGLGHSLAI 327
           S+ L  ++ +
Sbjct: 382 SNFLRFAVQL 391



 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 68/240 (28%), Positives = 107/240 (44%), Gaps = 15/240 (6%)

Query: 69  VSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASG 128
           +S G  H+  VT N  ++ +G NN  QLG G   S+A    P  ++ L    V  A    
Sbjct: 78  LSCGDEHTAIVTGNNKLYMFGSNNWGQLGLG---SKAAIIKPTCIKALKPEKVKLAACGR 134

Query: 129 VVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQT 188
             +    D G ++  G +  GQLGLG           V     + I ++S G   + A T
Sbjct: 135 NHTLVSTDTGGVYAAGGNNEGQLGLGDTDDRDTFHQIVFFTPADTIKQLSAGANTSAALT 194

Query: 189 EDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSE--SDQEISSSTIEKAQKLVSEGM 246
           EDGKLF WG +++G+IG   K+    P +  + +     S     S+ +    +L + G 
Sbjct: 195 EDGKLFMWGDNSEGQIGLEDKSNVCIPHEVTVGKPISWISCGYYHSAFVTMDGELYTFGE 254

Query: 247 EKEKYMPIIWE-------PFLVEGV--EVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLG 297
            +   + +  E       P  V G+   V+ +ACG  H++VL    V+ + G   +GQLG
Sbjct: 255 PENGKLGLPNELLMNHRSPQRVLGIPERVIQVACGGGHTVVLTEK-VVYAFGLGQFGQLG 313



 Score = 58.5 bits (140), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 42/158 (26%), Positives = 72/158 (45%), Gaps = 7/158 (4%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAW 88
           + +FG+   G LGLP  L     +   P RV G+P  V  V+ G  H++ +T    V+A+
Sbjct: 249 LYTFGEPENGKLGLPNELL---MNHRSPQRVLGIPERVIQVACGGGHTVVLTEK-VVYAF 304

Query: 89  GRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKR 148
           G     QLG G      +  +PK +E +    +C        ++ + + G L+ +G  + 
Sbjct: 305 GLGQFGQLGLGTFLFETS--EPKIIERIKDQKICHISCGENHTALMTELGLLYTFGDGRH 362

Query: 149 GQLGLG-KDITEAIVPSRVEALAGEKIVKVSFGWGHAL 185
           G+LGLG ++ T    P+         +  ++ G  H L
Sbjct: 363 GKLGLGMENFTNQFFPTLCSNFLRFAVQLIACGGCHML 400


>gi|312199638|ref|YP_004019699.1| chromosome condensation regulator RCC1 [Frankia sp. EuI1c]
 gi|311230974|gb|ADP83829.1| regulator of chromosome condensation RCC1 [Frankia sp. EuI1c]
          Length = 372

 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 63/171 (36%), Positives = 92/171 (53%), Gaps = 12/171 (7%)

Query: 56  PTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEG 115
           P +V GL +DVT+V+ G +   AV ++G  WAWG NN  QLG G      T   P +V G
Sbjct: 149 PVQVAGL-TDVTAVAGGMHTGYAVRSDGTAWAWGENNAGQLGDGTTTDSPT---PVQVSG 204

Query: 116 LDQVNVCAAFASGVVSS-AIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKI 174
           L QVN   A A GV    A+  DG++W WG +  G LG G   T+++ P  V  L   +I
Sbjct: 205 LTQVN---AIAGGVYRGYALRSDGTVWAWGSNSFGALGDGT-TTDSLTPVPVAGL--TQI 258

Query: 175 VKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLD-SNIDRSS 224
             ++ G     A   DG ++ WGY+ +G++GN      S+P+  S + R++
Sbjct: 259 TAIAAGSNSGYALRSDGTVWAWGYNYEGQLGNGTTTDSSTPVQVSGLTRAT 309



 Score = 74.3 bits (181), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 60/185 (32%), Positives = 91/185 (49%), Gaps = 14/185 (7%)

Query: 31  SFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGR 90
           ++G+ + G LG  T+      D+  P +V GL + V +++ G Y   A+ ++G VWAWG 
Sbjct: 179 AWGENNAGQLGDGTTT-----DSPTPVQVSGL-TQVNAIAGGVYRGYALRSDGTVWAWGS 232

Query: 91  NNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQ 150
           N+   LG G      T   P  V GL Q+   AA ++     A+  DG++W WG +  GQ
Sbjct: 233 NSFGALGDGTTTDSLT---PVPVAGLTQITAIAAGSN--SGYALRSDGTVWAWGYNYEGQ 287

Query: 151 LGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKA 210
           LG G   T++  P +V  L     +      G+AL +  DG +  WG  A G +GN    
Sbjct: 288 LGNGT-TTDSSTPVQVSGLTRATAIAAGAYTGYALRR--DGTVRAWGSGAGGALGNGTTT 344

Query: 211 LESSP 215
             S+P
Sbjct: 345 NRSTP 349



 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 81/293 (27%), Positives = 124/293 (42%), Gaps = 24/293 (8%)

Query: 28  AVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWA 87
           AV ++GD S   LG  T+      D   P +V  L  DV ++ AG ++  AV ++G  WA
Sbjct: 76  AVQAWGDNSHNELGDGTTT-----DRLTPVQVNDL-VDVVAIGAGAHNGYAVRSDGTAWA 129

Query: 88  WGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGV-VSSAIGDDGSLWVWGKS 146
           WG N++  +G G   +R+    P +V GL  V    A A G+    A+  DG+ W WG++
Sbjct: 130 WGENSDGSVGDGTTVNRSL---PVQVAGLTDVT---AVAGGMHTGYAVRSDGTAWAWGEN 183

Query: 147 KRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGN 206
             GQLG G   T++  P +V  L   ++  ++ G     A   DG ++ WG ++ G +G+
Sbjct: 184 NAGQLGDGT-TTDSPTPVQVSGL--TQVNAIAGGVYRGYALRSDGTVWAWGSNSFGALGD 240

Query: 207 LGKALESSPLD-------SNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPF 259
                  +P+        + I   S S   + S     A     EG            P 
Sbjct: 241 GTTTDSLTPVPVAGLTQITAIAAGSNSGYALRSDGTVWAWGYNYEGQLGNGTTTDSSTPV 300

Query: 260 LVEGV-EVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDIN 311
            V G+     IA G      L R+G + + GS   G LG         P  + 
Sbjct: 301 QVSGLTRATAIAAGAYTGYALRRDGTVRAWGSGAGGALGNGTTTNRSTPAQVT 353



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 55/169 (32%), Positives = 80/169 (47%), Gaps = 14/169 (8%)

Query: 10  NHVNVLTSRIFMRSA--SGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVT 67
             VN +   ++   A  S   V ++G  S GALG  T+      D+  P  V GL + +T
Sbjct: 206 TQVNAIAGGVYRGYALRSDGTVWAWGSNSFGALGDGTTT-----DSLTPVPVAGL-TQIT 259

Query: 68  SVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFAS 127
           +++AG     A+ ++G VWAWG N E QLG G     +T   P +V GL +    AA A 
Sbjct: 260 AIAAGSNSGYALRSDGTVWAWGYNYEGQLGNGTTTDSST---PVQVSGLTRATAIAAGA- 315

Query: 128 GVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVK 176
                A+  DG++  WG    G LG G   T    P++V  L+G   + 
Sbjct: 316 -YTGYALRRDGTVRAWGSGAGGALGNGT-TTNRSTPAQVTGLSGITTIA 362



 Score = 61.6 bits (148), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 79/304 (25%), Positives = 123/304 (40%), Gaps = 28/304 (9%)

Query: 76  SLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIG 135
           + A T  G V  WG N + QLG G    R T   P +V G+D++   AA      + A  
Sbjct: 19  TAAATGPGFVLDWGANGQGQLGDGTTTGRLT---PVQVLGIDELTAVAAGEGTGYAMAY- 74

Query: 136 DDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFG 195
             G++  WG +   +LG G   T+ + P +V  L    +V +  G  +  A   DG  + 
Sbjct: 75  --GAVQAWGDNSHNELGDGT-TTDRLTPVQVNDLV--DVVAIGAGAHNGYAVRSDGTAWA 129

Query: 196 WGYSADGRIGNLGKALESSPLD-------SNIDRSSESDQEISSSTIEKAQKLVSEGMEK 248
           WG ++DG +G+      S P+        + +     +   + S     A    + G   
Sbjct: 130 WGENSDGSVGDGTTVNRSLPVQVAGLTDVTAVAGGMHTGYAVRSDGTAWAWGENNAGQLG 189

Query: 249 EKYMPIIWEPFLVEGVEVVD-IACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFP 307
           +        P  V G+  V+ IA G      L  +G + + GSN +G LG       + P
Sbjct: 190 DGTTTDSPTPVQVSGLTQVNAIAGGVYRGYALRSDGTVWAWGSNSFGALGDGTTTDSLTP 249

Query: 308 VDINFHPVSISSGLGHSLAICEVRSSNVTGGARGIV-SWGWNRSSQLGR--MGPDNVPLV 364
           V +        +GL    AI    +S     + G V +WG+N   QLG       + P+ 
Sbjct: 250 VPV--------AGLTQITAIAAGSNSGYALRSDGTVWAWGYNYEGQLGNGTTTDSSTPVQ 301

Query: 365 VEGL 368
           V GL
Sbjct: 302 VSGL 305


>gi|118100936|ref|XP_417522.2| PREDICTED: protein RCC2 [Gallus gallus]
          Length = 464

 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 84/299 (28%), Positives = 131/299 (43%), Gaps = 47/299 (15%)

Query: 75  HSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSS-- 132
           HSL +T  G +W+WGRN + QLG G         D KRVE    + V  + A  + +   
Sbjct: 103 HSLLITAEGKLWSWGRNEKGQLGHG---------DTKRVEAPKLIEVLGSEAIVLAACGR 153

Query: 133 ----AIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQT 188
               A+ + GS++ +G++K GQLGLG        P+++    G+ I K++ G   ++   
Sbjct: 154 NHTLALTETGSVYAFGENKMGQLGLGNQTDAVPSPTQI-MYNGQPITKMACGAEFSMIMD 212

Query: 189 EDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEK 248
             G L+ +G    G++G+            N D    +  +      E   + V+  +EK
Sbjct: 213 CKGNLYSFGCPEYGQLGH------------NSDGKFIARAQRIEYDCELVPRRVAIFIEK 260

Query: 249 EKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPV 308
            K   I+  P +V    V D+ACG +H+LVL     + S G   YG+LG  +Q   M P 
Sbjct: 261 TKDGQILPVPNVV----VRDVACGANHTLVLDSQKRVFSWGFGGYGRLGHAEQKDEMVPR 316

Query: 309 DINFH------PVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPDNV 361
            +            I +G   S A+ E      TG   G+  WG   +S+   M P  V
Sbjct: 317 LVKLFDFPGRGAAQIYAGYTCSFAVSE------TG---GLFFWGATNTSRESTMYPKAV 366



 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 51/175 (29%), Positives = 74/175 (42%), Gaps = 30/175 (17%)

Query: 66  VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAF 125
           +   + G  H+LA+T  G+V+A+G N   QLG G      T   P   + +         
Sbjct: 146 IVLAACGRNHTLALTETGSVYAFGENKMGQLGLG----NQTDAVPSPTQIMYNGQPITKM 201

Query: 126 ASGVVSSAIGD-DGSLWVWGKSKRGQLGL---GKDITEA--------IVPSRVEALAGEK 173
           A G   S I D  G+L+ +G  + GQLG    GK I  A        +VP RV A+  EK
Sbjct: 202 ACGAEFSMIMDCKGNLYSFGCPEYGQLGHNSDGKFIARAQRIEYDCELVPRRV-AIFIEK 260

Query: 174 -------------IVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSP 215
                        +  V+ G  H L      ++F WG+   GR+G+  +  E  P
Sbjct: 261 TKDGQILPVPNVVVRDVACGANHTLVLDSQKRVFSWGFGGYGRLGHAEQKDEMVP 315



 Score = 38.1 bits (87), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 49/183 (26%), Positives = 73/183 (39%), Gaps = 22/183 (12%)

Query: 10  NHVNVLTSRIFMRSASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSV 69
           NH  VL S+          V S+G G  G LG       +     +    PG       +
Sbjct: 282 NHTLVLDSQ--------KRVFSWGFGGYGRLGHAEQKDEMVPRLVKLFDFPG--RGAAQI 331

Query: 70  SAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGV 129
            AG+  S AV+  G ++ WG  N          SR +   PK V+ L    +  + A G 
Sbjct: 332 YAGYTCSFAVSETGGLFFWGATN---------TSRESTMYPKAVQDLCGWKI-RSLACGK 381

Query: 130 VSSAIGDDGSLWVWGKSKR-GQLGLGKDITEAIVPSR-VEALAGEKIVKVSFGWGHALAQ 187
            S  +  D S   WG S   G+LG G    ++   ++ V+ L G    +V+ G+ H+L  
Sbjct: 382 SSIIVAADESTISWGPSPTFGELGYGDHKPKSSTAAQEVKTLDGIYTEQVAMGYAHSLVI 441

Query: 188 TED 190
             D
Sbjct: 442 ARD 444


>gi|74140658|dbj|BAB30628.3| unnamed protein product [Mus musculus]
          Length = 590

 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 83/310 (26%), Positives = 149/310 (48%), Gaps = 29/310 (9%)

Query: 32  FGDGSQGALGLPTSLTGVGGDAYEPTRVPGL-PSDVTSVSAGHYHSLAVTNNGAVWAWGR 90
           FG  + G LGL     G      +PT +  L P  V   + G  H+L  T+ G V+A G 
Sbjct: 97  FGSNNWGQLGL-----GSKAAIIKPTCIKALKPEKVKLAACGRNHTLVSTDTGGVYAAGG 151

Query: 91  NNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQ 150
           NNE QLG G  + R T++        D +   +A A+   S+A+ +DG L++WG +  GQ
Sbjct: 152 NNEGQLGLGDTDDRDTFHQIVFFTPADTIKQLSAGAN--TSAALTEDGKLFMWGDNSEGQ 209

Query: 151 LGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKA 210
           +GL +D +   +P   E   G+ I  +S G+ H+   T DG+L+ +G   +G++G   + 
Sbjct: 210 IGL-EDKSNVCIPH--EVTVGKPISWISCGYYHSAFVTMDGELYTFGEPENGKLGLPNEL 266

Query: 211 LESSPLDSNIDRSSESDQEISS---STIEKAQKLV-SEGMEKE------KYMPIIWEPFL 260
           L +      +    E   +++     T+   +K+V + G+ +        ++    EP +
Sbjct: 267 LMNHRSPQRVLGIPERVIQVACGGGHTVVLTEKVVYAFGLGQFGQLGLGTFLFETSEPKI 326

Query: 261 VEGV---EVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFHPVSI 317
           +E +   ++  I+CG +H+ ++   G+L + G   +G+LG     +GM      F P   
Sbjct: 327 IERIKDQKICHISCGENHTALMTELGLLYTFGDGRHGKLG-----LGMENFTNQFFPTLC 381

Query: 318 SSGLGHSLAI 327
           S+ L  ++ +
Sbjct: 382 SNFLRFAVQL 391



 Score = 65.9 bits (159), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 68/240 (28%), Positives = 107/240 (44%), Gaps = 15/240 (6%)

Query: 69  VSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASG 128
           +S G  H+  VT N  ++ +G NN  QLG G   S+A    P  ++ L    V  A    
Sbjct: 78  LSCGDEHTAIVTGNNKLYMFGSNNWGQLGLG---SKAAIIKPTCIKALKPEKVKLAACGR 134

Query: 129 VVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQT 188
             +    D G ++  G +  GQLGLG           V     + I ++S G   + A T
Sbjct: 135 NHTLVSTDTGGVYAAGGNNEGQLGLGDTDDRDTFHQIVFFTPADTIKQLSAGANTSAALT 194

Query: 189 EDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSE--SDQEISSSTIEKAQKLVSEGM 246
           EDGKLF WG +++G+IG   K+    P +  + +     S     S+ +    +L + G 
Sbjct: 195 EDGKLFMWGDNSEGQIGLEDKSNVCIPHEVTVGKPISWISCGYYHSAFVTMDGELYTFGE 254

Query: 247 EKEKYMPIIWE-------PFLVEGV--EVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLG 297
            +   + +  E       P  V G+   V+ +ACG  H++VL    V+ + G   +GQLG
Sbjct: 255 PENGKLGLPNELLMNHRSPQRVLGIPERVIQVACGGGHTVVLTEK-VVYAFGLGQFGQLG 313



 Score = 58.2 bits (139), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 42/158 (26%), Positives = 72/158 (45%), Gaps = 7/158 (4%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAW 88
           + +FG+   G LGLP  L     +   P RV G+P  V  V+ G  H++ +T    V+A+
Sbjct: 249 LYTFGEPENGKLGLPNELL---MNHRSPQRVLGIPERVIQVACGGGHTVVLTEK-VVYAF 304

Query: 89  GRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKR 148
           G     QLG G      +  +PK +E +    +C        ++ + + G L+ +G  + 
Sbjct: 305 GLGQFGQLGLGTFLFETS--EPKIIERIKDQKICHISCGENHTALMTELGLLYTFGDGRH 362

Query: 149 GQLGLG-KDITEAIVPSRVEALAGEKIVKVSFGWGHAL 185
           G+LGLG ++ T    P+         +  ++ G  H L
Sbjct: 363 GKLGLGMENFTNQFFPTLCSNFLRFAVQLIACGGCHML 400


>gi|340375548|ref|XP_003386296.1| PREDICTED: e3 ubiquitin-protein ligase HERC2 [Amphimedon
            queenslandica]
          Length = 4694

 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 96/317 (30%), Positives = 135/317 (42%), Gaps = 37/317 (11%)

Query: 32   FGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRN 91
             G GS   +  PT LT +       TR  G+     ++ +G  H LAVT  G ++AWG  
Sbjct: 3899 LGIGSSDNVATPTPLTSLA------TR--GIAVKKIAIHSGGKHCLAVTTQGELYAWGEG 3950

Query: 92   NEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQL 151
             + +LG G   +    N P  +E L   +V  A      S+ I DDGSL+ WGK + G+L
Sbjct: 3951 EDGKLGLG---TTVNMNVPHLIESLKSKHVIDAGCGSSHSACITDDGSLYTWGKGRYGRL 4007

Query: 152  GLGKDITEAIVPSRVEALAGEKIVKVSFGWGHA--LAQTEDGKLFGWGYSADGRIGNLGK 209
            G     T+   P  V AL GE++  V+ G G A  L  T  G +F WG   DG  G LG+
Sbjct: 4008 GHNDHETQH-KPKLVSALKGEQVTCVACGSGDAQTLCATASGCVFSWG---DGDYGKLGR 4063

Query: 210  -ALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGME----KEKYMPI-------IWE 257
               E S +   ID  +           + +  L + G      K  Y  +          
Sbjct: 4064 GGNEGSKVPKKIDSLTGKHVIKLLCGSQFSMALTTAGHVYTWGKGDYYRLGHGDDSHQRT 4123

Query: 258  PFLVEGV----EVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFH 313
            P  V G+     V+DI CG  H +V   +G + S G N  GQ+G +       P  IN  
Sbjct: 4124 PRRVLGLLAHENVIDIGCGSLHCIVCTESGKVFSWGDNDEGQIGNDTTQAVSVPKRINIT 4183

Query: 314  PV----SISSGLGHSLA 326
                   ++ G  HS+A
Sbjct: 4184 DNICIDHVACGSAHSIA 4200



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 70/244 (28%), Positives = 108/244 (44%), Gaps = 57/244 (23%)

Query: 133 AIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGK 192
           A+  DG ++ WG+   G LG+G   ++   P+ V AL+G++IV +S G  H+ A TEDG 
Sbjct: 522 ALTKDGKVYSWGQGSNGVLGIGNTESQT-APTAVAALSGDRIVHISAGSMHSAAVTEDGV 580

Query: 193 LFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYM 252
           L+ WG  + GR+G+                                      G  ++K +
Sbjct: 581 LYTWGKGSYGRLGH--------------------------------------GNAEDKLI 602

Query: 253 PIIWEPFLVEGVEVVDIACGF--DHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDI 310
           P I E   + GV++V + CG    H+L L   G + S G   YG+LGR   D    P  I
Sbjct: 603 PTIVEG--LNGVKIVQVDCGSGDAHTLALDDTGQVWSWGDGDYGKLGRPGSDQNKVPKPI 660

Query: 311 NFHPVSISSGLGHSLAICEVRSSNVTGGAR----GIVSWGWNRSSQLGRMGPDNV--PLV 364
                   SG+G +  + ++   N    A      + SWG   + QLG    ++V  P +
Sbjct: 661 --------SGIGSTSPVVKIICGNQISMALTKDGKLYSWGCGDTYQLGHGNQEHVRQPKL 712

Query: 365 VEGL 368
           +EGL
Sbjct: 713 IEGL 716



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 62/183 (33%), Positives = 92/183 (50%), Gaps = 15/183 (8%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSD-VTSVSAGHYHSLAVTNNGAVWA 87
           V S+G GS G LG+     G       PT V  L  D +  +SAG  HS AVT +G ++ 
Sbjct: 529 VYSWGQGSNGVLGI-----GNTESQTAPTAVAALSGDRIVHISAGSMHSAAVTEDGVLYT 583

Query: 88  WGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAA-FASGVVSS-AIGDDGSLWVWGK 145
           WG+ +  +LG G  E +     P  VEGL+ V +      SG   + A+ D G +W WG 
Sbjct: 584 WGKGSYGRLGHGNAEDKLI---PTIVEGLNGVKIVQVDCGSGDAHTLALDDTGQVWSWGD 640

Query: 146 SKRGQLGL-GKDITEAIVPSRVEAL-AGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGR 203
              G+LG  G D  +  VP  +  + +   +VK+  G   ++A T+DGKL+ WG     +
Sbjct: 641 GDYGKLGRPGSDQNK--VPKPISGIGSTSPVVKIICGNQISMALTKDGKLYSWGCGDTYQ 698

Query: 204 IGN 206
           +G+
Sbjct: 699 LGH 701



 Score = 74.7 bits (182), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 96/336 (28%), Positives = 140/336 (41%), Gaps = 46/336 (13%)

Query: 29   VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVT---SVSAGHYHSLAVTNNGAV 85
            V + G+GS G LG+     G   +   P ++  L   V    +VS    H LAVT +G V
Sbjct: 2979 VFACGEGSSGRLGI-----GGFANIRMPHQISSLSMYVVRKVAVSCAGRHVLAVTADGKV 3033

Query: 86   WAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGK 145
            ++WG     QLG G+L+S   ++ PK +E     ++         S+A+  +G L+ WG+
Sbjct: 3034 FSWGDGQYGQLGHGSLQS---YDRPKMIEIFQAKHIREVSCGTGHSAAVSVNGELFTWGQ 3090

Query: 146  SKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGW--GHALAQTEDGKLFGWGYSADGR 203
               G+LG G D      P  V AL   +I  V+ G    H LA   D  L+ WG   DG 
Sbjct: 3091 GADGRLGHG-DSNNQTKPKLVRALEKVRISCVACGSRNAHTLA-AGDNSLWAWG---DGS 3145

Query: 204  IGNLGKALESSPLDSNIDRSSESDQEIS-------SSTIEKAQKLVS--------EGMEK 248
             G LG    SS  D  +   +     I        S  + K  K+ +         G + 
Sbjct: 3146 FGKLGLKDGSSSTDVPVQVITFPSNIIQIECGMHFSVLLTKEGKVYTWGKGEYYRLGNDS 3205

Query: 249  EKYMPIIWEPFLVEGV---EVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGM 305
                PI   P LV+G+    +  +A G  H L L  +G + S G N +GQ G        
Sbjct: 3206 TSVQPI---PTLVDGLASKTITQVAVGALHCLALTSSGEVYSWGDNEHGQQGNNS----- 3257

Query: 306  FPVDINFHPVSISSGLGHSLAICEVRSSNVTGGARG 341
                 N  P  ++S  GH +      SS+    A+G
Sbjct: 3258 --TICNRKPQIVASLKGHRICKIACGSSHSIAFAQG 3291



 Score = 74.3 bits (181), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 61/197 (30%), Positives = 93/197 (47%), Gaps = 13/197 (6%)

Query: 28   AVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSD-VTSVS--AGHYHSLAVTNNGA 84
            ++ ++G G  G LG     T      ++P  V  L  + VT V+  +G   +L  T +G 
Sbjct: 3995 SLYTWGKGRYGRLGHNDHET-----QHKPKLVSALKGEQVTCVACGSGDAQTLCATASGC 4049

Query: 85   VWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWG 144
            V++WG  +  +LGRG  E       PK+++ L   +V         S A+   G ++ WG
Sbjct: 4050 VFSWGDGDYGKLGRGGNEGSKV---PKKIDSLTGKHVIKLLCGSQFSMALTTAGHVYTWG 4106

Query: 145  KSKRGQLGLGKDITEAIVPSRVEAL-AGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGR 203
            K    +LG G D +    P RV  L A E ++ +  G  H +  TE GK+F WG + +G+
Sbjct: 4107 KGDYYRLGHGDD-SHQRTPRRVLGLLAHENVIDIGCGSLHCIVCTESGKVFSWGDNDEGQ 4165

Query: 204  IGNLGKALESSPLDSNI 220
            IGN      S P   NI
Sbjct: 4166 IGNDTTQAVSVPKRINI 4182



 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 78/319 (24%), Positives = 131/319 (41%), Gaps = 62/319 (19%)

Query: 21   MRSASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTS--VSAGHYHSLA 78
            + + S  +V  +G   +G LG      G+ G+  +  R+    S++    ++ G     A
Sbjct: 3828 LPTGSTFSVFGWGHNHRGQLG------GIEGNKVKSPRLCESLSELNPAMITGGEQTLFA 3881

Query: 79   VTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQ----VNVCAAFASGVVSSAI 134
            VT++G V+A G     +LG G+ ++ AT   P  +  L      V   A  + G    A+
Sbjct: 3882 VTDDGKVYASGYAAHGRLGIGSSDNVAT---PTPLTSLATRGIAVKKIAIHSGGKHCLAV 3938

Query: 135  GDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLF 194
               G L+ WG+ + G+LGLG  +    VP  +E+L  + ++    G  H+   T+DG L+
Sbjct: 3939 TTQGELYAWGEGEDGKLGLGTTVNMN-VPHLIESLKSKHVIDAGCGSSHSACITDDGSLY 3997

Query: 195  GWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPI 254
             WG    GR+G+     +  P                        KLVS           
Sbjct: 3998 TWGKGRYGRLGHNDHETQHKP------------------------KLVSA---------- 4023

Query: 255  IWEPFLVEGVEVVDIACGF--DHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINF 312
                  ++G +V  +ACG     +L    +G + S G   YG+LGR   +    P  I+ 
Sbjct: 4024 ------LKGEQVTCVACGSGDAQTLCATASGCVFSWGDGDYGKLGRGGNEGSKVPKKIDS 4077

Query: 313  ----HPVSISSGLGHSLAI 327
                H + +  G   S+A+
Sbjct: 4078 LTGKHVIKLLCGSQFSMAL 4096



 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 75/309 (24%), Positives = 123/309 (39%), Gaps = 67/309 (21%)

Query: 76   SLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIG 135
            +L   +  +V+ WG N+  QLG   +E       P+  E L ++N            A+ 
Sbjct: 3827 TLPTGSTFSVFGWGHNHRGQLG--GIEGNKV-KSPRLCESLSELNPAMITGGEQTLFAVT 3883

Query: 136  DDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGE----KIVKVSFGWGHALAQTEDG 191
            DDG ++  G +  G+LG+G     A  P+ + +LA      K + +  G  H LA T  G
Sbjct: 3884 DDGKVYASGYAAHGRLGIGSSDNVA-TPTPLTSLATRGIAVKKIAIHSGGKHCLAVTTQG 3942

Query: 192  KLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKY 251
            +L+ WG   DG++G LG     + ++ N+                               
Sbjct: 3943 ELYAWGEGEDGKLG-LG-----TTVNMNV------------------------------- 3965

Query: 252  MPIIWEPFLVEGVE---VVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPV 308
                  P L+E ++   V+D  CG  HS  +  +G L + G   YG+LG    +    P 
Sbjct: 3966 ------PHLIESLKSKHVIDAGCGSSHSACITDDGSLYTWGKGRYGRLGHNDHETQHKPK 4019

Query: 309  DINF----HPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPD--NVP 362
             ++         ++ G G +  +C   S  V        SWG     +LGR G +   VP
Sbjct: 4020 LVSALKGEQVTCVACGSGDAQTLCATASGCV-------FSWGDGDYGKLGRGGNEGSKVP 4072

Query: 363  LVVEGLEGE 371
              ++ L G+
Sbjct: 4073 KKIDSLTGK 4081



 Score = 64.7 bits (156), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 78/316 (24%), Positives = 131/316 (41%), Gaps = 32/316 (10%)

Query: 76   SLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQ--VNVCAAFASGVVSSA 133
            S  V+++G V+A G  +  +LG G     A    P ++  L    V   A   +G    A
Sbjct: 2970 SFVVSDDGKVFACGEGSSGRLGIGGF---ANIRMPHQISSLSMYVVRKVAVSCAGRHVLA 3026

Query: 134  IGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKL 193
            +  DG ++ WG  + GQLG G  +     P  +E    + I +VS G GH+ A + +G+L
Sbjct: 3027 VTADGKVFSWGDGQYGQLGHGS-LQSYDRPKMIEIFQAKHIREVSCGTGHSAAVSVNGEL 3085

Query: 194  FGWGYSADGRIGN----------LGKALESSPLDS------NIDRSSESDQEISSSTIEK 237
            F WG  ADGR+G+          L +ALE   +        N    +  D  + +     
Sbjct: 3086 FTWGQGADGRLGHGDSNNQTKPKLVRALEKVRISCVACGSRNAHTLAAGDNSLWAWGDGS 3145

Query: 238  AQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLG 297
              KL  +       +P+    F      ++ I CG   S++L + G + + G   Y +LG
Sbjct: 3146 FGKLGLKDGSSSTDVPVQVITF---PSNIIQIECGMHFSVLLTKEGKVYTWGKGEYYRLG 3202

Query: 298  REKQDMGMFPVDINFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMG 357
             +   +   P  ++     ++S     +A+  +    +T     + SWG N   Q G   
Sbjct: 3203 NDSTSVQPIPTLVD----GLASKTITQVAVGALHCLALTSSGE-VYSWGDNEHGQQGNNS 3257

Query: 358  P--DNVPLVVEGLEGE 371
               +  P +V  L+G 
Sbjct: 3258 TICNRKPQIVASLKGH 3273



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 57/222 (25%), Positives = 91/222 (40%), Gaps = 47/222 (21%)

Query: 80   TNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGS 139
            T+   V+ WG N+  QLG    E++     P     L +++          S  + DDG 
Sbjct: 2921 THGNKVFVWGLNDMRQLGTDLSEAKV--KSPIESRTLARLHPIQFAGGSKCSFVVSDDGK 2978

Query: 140  LWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWG--HALAQTEDGKLFGWG 197
            ++  G+   G+LG+G       +P ++ +L+   + KV+      H LA T DGK+F WG
Sbjct: 2979 VFACGEGSSGRLGIG-GFANIRMPHQISSLSMYVVRKVAVSCAGRHVLAVTADGKVFSWG 3037

Query: 198  YSADGRIGNLGK-ALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIW 256
               DG+ G LG  +L+S       DR                              P + 
Sbjct: 3038 ---DGQYGQLGHGSLQS------YDR------------------------------PKMI 3058

Query: 257  EPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGR 298
            E F  +   + +++CG  HS  +  NG L + G    G+LG 
Sbjct: 3059 EIF--QAKHIREVSCGTGHSAAVSVNGELFTWGQGADGRLGH 3098


>gi|118345495|ref|XP_976578.1| regulator of chromosome condensation (RCC1) [Tetrahymena
           thermophila]
 gi|89287995|gb|EAR85983.1| regulator of chromosome condensation (RCC1) [Tetrahymena
           thermophila SB210]
          Length = 722

 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 91/365 (24%), Positives = 154/365 (42%), Gaps = 74/365 (20%)

Query: 10  NHVNVLTSRIFMRSASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVP-GLPSDVTS 68
           N+++  T+  F  S     V  +G G  G LG   S      + +   + P G+  +++ 
Sbjct: 94  NNISTGTNHSFAWSTELNQVYCWGIGEYGKLGNKESKDLQYPEIFNGLKQPEGIQWEISE 153

Query: 69  VSAGHYHSLAV-----TNN----GAVWAWGRNNEVQLG----RGALESRATWNDPKRVEG 115
           +S G  H++AV      NN      ++ WG +++ QLG    +    ++     P   EG
Sbjct: 154 ISCGENHTVAVIKQINVNNSQSQNKLYVWGSSSDWQLGIDTGKTDYVNQPLEMSPDYWEG 213

Query: 116 -LDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKI 174
            ++ V  C+ F     + AI   G ++ WGK    +LG   +I     P ++E+L+ ++I
Sbjct: 214 NVESVKACSDF-----TIAIDKQGRIFSWGKGGFNRLGYKAEIVNQKHPLQIESLSKQQI 268

Query: 175 VKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSST 234
           ++ S G  H+ A T +G+L+ WG  ++G++G                             
Sbjct: 269 IQFSLGSFHSAAITNNGRLYTWGRDSNGQLG----------------------------- 299

Query: 235 IEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYG 294
                     G  K    P   E   ++   +V +ACG  H+L L +N  L S G N  G
Sbjct: 300 ---------HGQAKADIFPK--EVQALQNTYIVSVACGEGHTLALSKNNELFSWGLNSSG 348

Query: 295 QLGREKQDM-GMFPVDINFHP----VSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNR 349
           QLGR  +++    P  I+F        I+ G  HSL + +  +         + SWG N+
Sbjct: 349 QLGRASENLKSSDPKKISFFEDKSIKQIACGSKHSLVLLQDGT---------VYSWGSNQ 399

Query: 350 SSQLG 354
             QLG
Sbjct: 400 YGQLG 404



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 89/348 (25%), Positives = 149/348 (42%), Gaps = 64/348 (18%)

Query: 58  RVPGLPSDVTSVS---AGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVE 114
           + P L SD++++     G  HS A+  N  V+AWG N    LGR    S   +N   + +
Sbjct: 19  QTPHLISDISNIVKIVCGANHSYAIDTNFEVYAWGCN----LGRKLGLSDEYYNQIFQAD 74

Query: 115 GLDQVNVCAAFA----SGVVSSAIGDDGSL---------WVWGKSKRGQLGLGKDITEAI 161
             +Q+ +           + + + G + S          + WG  + G+LG  K+  +  
Sbjct: 75  IPEQIKIPVKVTELSNKKINNISTGTNHSFAWSTELNQVYCWGIGEYGKLG-NKESKDLQ 133

Query: 162 VPSRVEALAGE-----KIVKVSFGWGHALA---------QTEDGKLFGWGYSADGRIG-N 206
            P     L        +I ++S G  H +A              KL+ WG S+D ++G +
Sbjct: 134 YPEIFNGLKQPEGIQWEISEISCGENHTVAVIKQINVNNSQSQNKLYVWGSSSDWQLGID 193

Query: 207 LGKA-LESSPLDSNIDR---SSESDQEISSST--IEKAQKLVS---EGMEKEKYMPII-- 255
            GK    + PL+ + D    + ES +  S  T  I+K  ++ S    G  +  Y   I  
Sbjct: 194 TGKTDYVNQPLEMSPDYWEGNVESVKACSDFTIAIDKQGRIFSWGKGGFNRLGYKAEIVN 253

Query: 256 -WEPFLVEGV---EVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDI- 310
              P  +E +   +++  + G  HS  +  NG L + G +  GQLG  +    +FP ++ 
Sbjct: 254 QKHPLQIESLSKQQIIQFSLGSFHSAAITNNGRLYTWGRDSNGQLGHGQAKADIFPKEVQ 313

Query: 311 ---NFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGR 355
              N + VS++ G GH+LA+ +            + SWG N S QLGR
Sbjct: 314 ALQNTYIVSVACGEGHTLALSK---------NNELFSWGLNSSGQLGR 352



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 30/102 (29%), Positives = 56/102 (54%), Gaps = 3/102 (2%)

Query: 56  PTRVPGLPSD-VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVE 114
           P  V  L +  + SV+ G  H+LA++ N  +++WG N+  QLGR +   +++  DPK++ 
Sbjct: 309 PKEVQALQNTYIVSVACGEGHTLALSKNNELFSWGLNSSGQLGRASENLKSS--DPKKIS 366

Query: 115 GLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKD 156
             +  ++         S  +  DG+++ WG ++ GQLG  +D
Sbjct: 367 FFEDKSIKQIACGSKHSLVLLQDGTVYSWGSNQYGQLGFDQD 408


>gi|21619468|gb|AAH31624.1| RPGR protein [Homo sapiens]
 gi|119579847|gb|EAW59443.1| retinitis pigmentosa GTPase regulator, isoform CRA_c [Homo sapiens]
 gi|325464495|gb|ADZ16018.1| retinitis pigmentosa GTPase regulator [synthetic construct]
          Length = 480

 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 79/267 (29%), Positives = 124/267 (46%), Gaps = 51/267 (19%)

Query: 32  FGDGSQGALGLPTSLTGVGGDAYEPTRVPGL-PSDVTSVSAGHYHSLAVTNNGAVWAWGR 90
           FG  + G LGL     G      +PT V  L P  V   + G  H+L  T  G V+A G 
Sbjct: 59  FGSNNWGQLGL-----GSKSAISKPTCVKALKPEKVKLAACGRNHTLVSTEGGNVYATGG 113

Query: 91  NNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQ 150
           NNE QLG G  E R T++         ++   +A ++   S+A+ +DG L++WG +  GQ
Sbjct: 114 NNEGQLGLGDTEERNTFHVISFFTSEHKIKQLSAGSN--TSAALTEDGRLFMWGDNSEGQ 171

Query: 151 LGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKA 210
           +GL K+++   VP +V    G+ +  +S G+ H+   T DG+L+ +G   +G++G   + 
Sbjct: 172 IGL-KNVSNVCVPQQVT--IGKPVSWISCGYYHSAFVTTDGELYVFGEPENGKLGLPNQL 228

Query: 211 LESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIA 270
           L +                       +  +LVSE  EK                 V+ +A
Sbjct: 229 LGN----------------------HRTPQLVSEIPEK-----------------VIQVA 249

Query: 271 CGFDHSLVLGRNGVLLSCGSNVYGQLG 297
           CG +H++VL  N V  + G   +GQLG
Sbjct: 250 CGGEHTVVLTENAV-YTFGLGQFGQLG 275



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 66/239 (27%), Positives = 101/239 (42%), Gaps = 51/239 (21%)

Query: 69  VSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGL--DQVNVCAAFA 126
           +S G  HS  VT N  ++ +G NN  QLG G   S++  + P  V+ L  ++V + A   
Sbjct: 40  LSCGDEHSAVVTGNNKLYMFGSNNWGQLGLG---SKSAISKPTCVKALKPEKVKLAACGR 96

Query: 127 SGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGE-KIVKVSFGWGHAL 185
           +  + S  G  G+++  G +  GQLGLG D  E      +     E KI ++S G   + 
Sbjct: 97  NHTLVSTEG--GNVYATGGNNEGQLGLG-DTEERNTFHVISFFTSEHKIKQLSAGSNTSA 153

Query: 186 AQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEG 245
           A TEDG+LF WG +++G+IG    +    P    I +                       
Sbjct: 154 ALTEDGRLFMWGDNSEGQIGLKNVSNVCVPQQVTIGK----------------------- 190

Query: 246 MEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMG 304
                  P+ W            I+CG+ HS  +  +G L   G    G+LG   Q +G
Sbjct: 191 -------PVSW------------ISCGYYHSAFVTTDGELYVFGEPENGKLGLPNQLLG 230



 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 53/184 (28%), Positives = 90/184 (48%), Gaps = 18/184 (9%)

Query: 33  GDGSQGALGLPTSLTGVGGDAYEPTRVP-GLPSDVTSVSAGHYHSLAVTNNGAVWAWGRN 91
           GD S+G +GL         +   P +V  G P  V+ +S G+YHS  VT +G ++ +G  
Sbjct: 165 GDNSEGQIGLKNV-----SNVCVPQQVTIGKP--VSWISCGYYHSAFVTTDGELYVFG-- 215

Query: 92  NEVQLGRGALESRATWND--PKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRG 149
            E + G+  L ++   N   P+ V  + +  +    A G   + +  + +++ +G  + G
Sbjct: 216 -EPENGKLGLPNQLLGNHRTPQLVSEIPEKVI--QVACGGEHTVVLTENAVYTFGLGQFG 272

Query: 150 QLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGK 209
           QLGLG  + E   P  +E +  + I  +S G  H    T+ G ++ +G   DGR G LG 
Sbjct: 273 QLGLGTFLFETSEPKVIENIRDQTISYISCGENHTALITDIGLMYTFG---DGRHGKLGL 329

Query: 210 ALES 213
            LE+
Sbjct: 330 GLEN 333


>gi|307107146|gb|EFN55390.1| hypothetical protein CHLNCDRAFT_57991 [Chlorella variabilis]
          Length = 596

 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 95/361 (26%), Positives = 151/361 (41%), Gaps = 66/361 (18%)

Query: 22  RSASGTAVVSFGDGSQGALGL--------PTSLTGVGGDAYEPTRVPGLPSDV--TSVSA 71
           ++A   A+ + G G  G LGL        P  +  V  D   P    G P D+    VSA
Sbjct: 170 QAAPEYAMYAMGRGFHGQLGLEQFDNQEQPQRVGAVERDVKVPL-YQGAPDDIHLAVVSA 228

Query: 72  GHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWND-----PKRVEGLDQVNVCAAFA 126
           G  HS +++  G ++ WG  +  +LG G       W       P+ +  L +  + +   
Sbjct: 229 GSSHSASISRRGELYTWGLASSGELGHGG------WTPIEVSCPRMITSLQRTRIVSVSC 282

Query: 127 SGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALA 186
               + AI + G LW  G+ + GQLG G    E ++   V+ +  E++V V+ G  H++A
Sbjct: 283 GANHTLAISETGQLWSCGRGRHGQLGHGHFHDEGLL-MLVDTIRHERVVSVAAGRAHSVA 341

Query: 187 QTEDGKLFGWGYSADGRIGNLG-KALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEG 245
              DGK+F WG ++ G++G+    A+   P          + Q +S    +  Q L    
Sbjct: 342 LAADGKIFTWGDASKGQLGHAQLAAVMQGP----------NPQPLSIPFPQAIQSL---- 387

Query: 246 MEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQ--LGREKQDM 303
            E  +  P            V  IA G DHS+ +   G LL+ GSN +GQ  LG      
Sbjct: 388 -EPARLKPP---------ARVTAIAAGGDHSMAVTVAGALLAFGSNKHGQARLGTGDTLD 437

Query: 304 GMFPVDINF----------HPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQL 353
            M P ++              + +  G  H+LA+ +V+      G   + S G N   +L
Sbjct: 438 RMIPTEVPLALESEGGQLVRAMQVHCGAQHTLALVQVQ------GHHQVRSVGGNSYGEL 491

Query: 354 G 354
           G
Sbjct: 492 G 492



 Score = 55.5 bits (132), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 62/200 (31%), Positives = 91/200 (45%), Gaps = 26/200 (13%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVP-------------GLPSDVTSVSAGHYH 75
           + ++GD S+G LG       + G   +P  +P               P+ VT+++AG  H
Sbjct: 348 IFTWGDASKGQLGHAQLAAVMQGPNPQPLSIPFPQAIQSLEPARLKPPARVTAIAAGGDH 407

Query: 76  SLAVTNNGAVWAWGRNN--EVQLGRGALESRATWND-PKRVEG-------LDQVNVCAAF 125
           S+AVT  GA+ A+G N   + +LG G    R    + P  +E          QV+ C A 
Sbjct: 408 SMAVTVAGALLAFGSNKHGQARLGTGDTLDRMIPTEVPLALESEGGQLVRAMQVH-CGAQ 466

Query: 126 ASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHAL 185
            +  +    G      V G S  G+LGLG D  E      + AL G+ IV VS G  H  
Sbjct: 467 HTLALVQVQGHHQVRSVGGNSY-GELGLG-DRLERHRFHPIPALKGKSIVCVSVGDWHNA 524

Query: 186 AQTEDGKLFGWGYSADGRIG 205
           A  +DG+L+ WG    G++G
Sbjct: 525 AICQDGRLYVWGRGDCGQLG 544



 Score = 51.6 bits (122), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 65/254 (25%), Positives = 101/254 (39%), Gaps = 78/254 (30%)

Query: 139 SLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKV---------------SFGWGH 183
           +++  G+   GQLGL +       P RV A+  E+ VKV               S G  H
Sbjct: 176 AMYAMGRGFHGQLGL-EQFDNQEQPQRVGAV--ERDVKVPLYQGAPDDIHLAVVSAGSSH 232

Query: 184 ALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVS 243
           + + +  G+L+ WG ++ G +G+ G     +P++ +  R   S Q               
Sbjct: 233 SASISRRGELYTWGLASSGELGHGG----WTPIEVSCPRMITSLQR-------------- 274

Query: 244 EGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGR-EKQD 302
                                 +V ++CG +H+L +   G L SCG   +GQLG     D
Sbjct: 275 --------------------TRIVSVSCGANHTLAISETGQLWSCGRGRHGQLGHGHFHD 314

Query: 303 MGMFP-VDINFHP--VSISSGLGHSLAICEVRSSNVTGGARG-IVSWGWNRSSQLGR--- 355
            G+   VD   H   VS+++G  HS+A+           A G I +WG     QLG    
Sbjct: 315 EGLLMLVDTIRHERVVSVAAGRAHSVAL----------AADGKIFTWGDASKGQLGHAQL 364

Query: 356 ----MGPDNVPLVV 365
                GP+  PL +
Sbjct: 365 AAVMQGPNPQPLSI 378



 Score = 40.0 bits (92), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 45/139 (32%), Positives = 64/139 (46%), Gaps = 16/139 (11%)

Query: 28  AVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVP-GLPSD------VTSVSAGHYHSLA-- 78
           A+++FG    G   L T  T    D   PT VP  L S+         V  G  H+LA  
Sbjct: 416 ALLAFGSNKHGQARLGTGDTL---DRMIPTEVPLALESEGGQLVRAMQVHCGAQHTLALV 472

Query: 79  -VTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDD 137
            V  +  V + G N+  +LG G    R  ++    ++G  +  VC +      ++AI  D
Sbjct: 473 QVQGHHQVRSVGGNSYGELGLGDRLERHRFHPIPALKG--KSIVCVSVGD-WHNAAICQD 529

Query: 138 GSLWVWGKSKRGQLGLGKD 156
           G L+VWG+   GQLGLG D
Sbjct: 530 GRLYVWGRGDCGQLGLGDD 548


>gi|157127963|ref|XP_001661249.1| hect E3 ubiquitin ligase [Aedes aegypti]
 gi|108882309|gb|EAT46534.1| AAEL002306-PA [Aedes aegypti]
          Length = 4837

 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 89/310 (28%), Positives = 136/310 (43%), Gaps = 44/310 (14%)

Query: 75  HSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAI 134
           H + +++   VW+WG  +  +LG G   S+     P  + GL +  VC  +     S+AI
Sbjct: 579 HVMVLSSANEVWSWGAGDGGRLGHGDTVSK---EHPTMIVGLHEKQVCGIYCGASYSAAI 635

Query: 135 GDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWG--HALAQTEDGK 192
              G L+ WG+   G+LG G    + +VP++V+AL   K+V V+ G G  H++  T++G 
Sbjct: 636 TIAGELFTWGRGTYGRLGHGNS-DDKLVPTQVQALKSYKVVDVALGSGDAHSMCVTDNGL 694

Query: 193 LFGWGYSADGRIGNLGK-ALESSPLDSNIDRSSESDQEISSSTIEKAQKL---------- 241
           LF WG   DG  G LG  +   SP+   ID      +  S S    A             
Sbjct: 695 LFAWG---DGDFGKLGNGSCNGSPIPVQIDTLVNVSRIYSGSQFSVALSCDGTLYTWGKG 751

Query: 242 ----VSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLG 297
               +  G  +   +P +     +EG ++ D+A G  H L L  +G L   G N Y Q+ 
Sbjct: 752 HGGRLGHGNSEHSNVPKLVRA--LEGKKIADVAVGSAHCLALTSSGELYGWGRNDYQQI- 808

Query: 298 REKQDMGMFPVDINFHPVSISSGLGHSLAICEVRSSNVT-GGARGIVSWGWNRSSQLGRM 356
                    P  ++  P+  S  L     +   R S +T G A+ IV   W  SS LG  
Sbjct: 809 --------CPSGVSRDPIIHSPILTTPPTL---RISGMTCGAAQSIV---WCHSSTLGVA 854

Query: 357 GPDNVPLVVE 366
               +P VV+
Sbjct: 855 S--KIPFVVD 862



 Score = 87.8 bits (216), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 63/173 (36%), Positives = 92/173 (53%), Gaps = 16/173 (9%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPS----DVTSVSAGHYHSLAVTNNGA 84
           + ++G G+ G LG      G   D   PT+V  L S    DV ++ +G  HS+ VT+NG 
Sbjct: 641 LFTWGRGTYGRLG-----HGNSDDKLVPTQVQALKSYKVVDV-ALGSGDAHSMCVTDNGL 694

Query: 85  VWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWG 144
           ++AWG  +  +LG G+         P +++ L  VNV   ++    S A+  DG+L+ WG
Sbjct: 695 LFAWGDGDFGKLGNGSCNGSPI---PVQIDTL--VNVSRIYSGSQFSVALSCDGTLYTWG 749

Query: 145 KSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWG 197
           K   G+LG G     + VP  V AL G+KI  V+ G  H LA T  G+L+GWG
Sbjct: 750 KGHGGRLGHGNS-EHSNVPKLVRALEGKKIADVAVGSAHCLALTSSGELYGWG 801



 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 65/196 (33%), Positives = 99/196 (50%), Gaps = 18/196 (9%)

Query: 19   IFMRSASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVT---SVSAGHYH 75
            +F+ S  G  + + G+G+ G LGL     G   +   P +VP L   V    +V +G  H
Sbjct: 2937 LFIVSQDG-KLYACGEGTNGRLGL-----GHNNNVPTPRQVPILNQYVVKKVAVHSGGKH 2990

Query: 76   SLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIG 135
            ++A+T +G V++WG   + +LG G   +R T   PK +E L    V         S+AI 
Sbjct: 2991 AMALTLDGKVFSWGEGEDGKLGHG---NRLTLEKPKLIESLRTKRVRDIACGSSHSAAIT 3047

Query: 136  DDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGW--GHALAQTEDGKL 193
              G L+ WG  + G+LG G + T+ + P  V  L G ++V+V+ G      L  TE+G +
Sbjct: 3048 SSGELYTWGLGEYGRLGHGDNCTQ-LKPKLVTTLQGHRVVQVACGSRDAQTLCLTEEGLV 3106

Query: 194  FGWGYSADGRIGNLGK 209
            F WG   DG  G LG+
Sbjct: 3107 FSWG---DGDFGKLGR 3119



 Score = 80.9 bits (198), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 85/327 (25%), Positives = 144/327 (44%), Gaps = 64/327 (19%)

Query: 56   PTRVPGLPSDV---TSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKR 112
            PT V  L   +    +V++G  H LA++++G V++WG   + +LG G   +R +++ PK 
Sbjct: 4013 PTLVESLQHVIIKKVAVNSGGKHCLALSSDGEVFSWGEGEDGKLGHG---NRDSYDRPKL 4069

Query: 113  VEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGE 172
            +E L  + V         S+ I   G +  WGK + G+LG G D  + + P  VEAL G 
Sbjct: 4070 IEALSGIGVIDIACGSAHSACITSQGHVLTWGKGRYGRLGHG-DSEDQLQPKLVEALLGY 4128

Query: 173  KIVKVSFGWGHA--LAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEI 230
            + + ++ G G A  L  T+D  ++ WG   DG  G LG+                     
Sbjct: 4129 RAIDIACGSGDAQTLCITDDDNVWSWG---DGDYGKLGRG-------------------- 4165

Query: 231  SSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGS 290
                        S+G +    +P+  E   + G+ V+ + CG   S+ L R+G + + G 
Sbjct: 4166 -----------GSDGCK----IPMKIES--LAGLGVIKVECGSQFSVALTRSGSVYTWGK 4208

Query: 291  NVYGQLGREKQDMGMFPVDINF----HPVSISSGLGHSLAICEVRSSNVTGGARGIVSWG 346
              Y +LG    D    P  +        +SI++G  H +A  +         +  + +WG
Sbjct: 4209 GDYHRLGHGNTDHVRRPKKVAALQGKKIISIATGSLHCVACSD---------SGEVFTWG 4259

Query: 347  WNRSSQL--GRMGPDNVPLVVEGLEGE 371
             N   QL  G +     P +V+ L+G+
Sbjct: 4260 DNDEGQLGDGTVTAIQRPRLVQSLQGK 4286



 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 53/182 (29%), Positives = 91/182 (50%), Gaps = 14/182 (7%)

Query: 29   VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGL----PSDVTSVSAGHYHSLAVTNNGA 84
            V+++G G  G LG      G   D  +P  V  L      D+ +  +G   +L +T++  
Sbjct: 4097 VLTWGKGRYGRLG-----HGDSEDQLQPKLVEALLGYRAIDI-ACGSGDAQTLCITDDDN 4150

Query: 85   VWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWG 144
            VW+WG  +  +LGRG  +       P ++E L  + V         S A+   GS++ WG
Sbjct: 4151 VWSWGDGDYGKLGRGGSDGCKI---PMKIESLAGLGVIKVECGSQFSVALTRSGSVYTWG 4207

Query: 145  KSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRI 204
            K    +LG G +      P +V AL G+KI+ ++ G  H +A ++ G++F WG + +G++
Sbjct: 4208 KGDYHRLGHG-NTDHVRRPKKVAALQGKKIISIATGSLHCVACSDSGEVFTWGDNDEGQL 4266

Query: 205  GN 206
            G+
Sbjct: 4267 GD 4268



 Score = 72.4 bits (176), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 44/141 (31%), Positives = 71/141 (50%), Gaps = 4/141 (2%)

Query: 75   HSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAI 134
             +L +T  G V++WG  +  +LGRG  E  +    P +VE L+ V V         S A+
Sbjct: 3096 QTLCLTEEGLVFSWGDGDFGKLGRGGSEGCSV---PHQVERLNSVGVMQIECGAQFSLAL 3152

Query: 135  GDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLF 194
               G +W WGK    +LG G D      P+ ++ L G+K++ V+ G  H LA T+ G+++
Sbjct: 3153 TKSGEVWTWGKGDYYRLGHGTD-QHVRKPTPIQGLRGKKVIHVAVGALHCLAVTDSGQVY 3211

Query: 195  GWGYSADGRIGNLGKALESSP 215
             WG +  G+ G+    +   P
Sbjct: 3212 AWGDNDHGQQGSGNTVVNKKP 3232



 Score = 65.1 bits (157), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 50/157 (31%), Positives = 73/157 (46%), Gaps = 10/157 (6%)

Query: 31   SFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPS-DVTSVSAGHYHSLAVTNNGAVWAWG 89
            S+GDG  G LG      G       P ++  L    V  V  G   S+A+T +G+V+ WG
Sbjct: 4153 SWGDGDYGKLG-----RGGSDGCKIPMKIESLAGLGVIKVECGSQFSVALTRSGSVYTWG 4207

Query: 90   RNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRG 149
            + +  +LG G  +       PK+V  L    + +     +   A  D G ++ WG +  G
Sbjct: 4208 KGDYHRLGHGNTDH---VRRPKKVAALQGKKIISIATGSLHCVACSDSGEVFTWGDNDEG 4264

Query: 150  QLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALA 186
            QLG G  +T    P  V++L G+ IVKV  G  H LA
Sbjct: 4265 QLGDGT-VTAIQRPRLVQSLQGKHIVKVICGSAHTLA 4300



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 81/299 (27%), Positives = 122/299 (40%), Gaps = 67/299 (22%)

Query: 84   AVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVW 143
             ++ WG N+  QLG G   SR     P   E L  +             A+  DG L+  
Sbjct: 3938 TIFGWGHNHRGQLG-GLDGSRIKM--PTPCEALSLLRPIQIAGGEQTLYAVTPDGKLYAT 3994

Query: 144  GKSKRGQLGLGKDITEAI-VPSRVEALAGEKIVKVSFGWG--HALAQTEDGKLFGWGYSA 200
            G    G+LG+G   T+++  P+ VE+L    I KV+   G  H LA + DG++F WG   
Sbjct: 3995 GYGAGGRLGIGG--TDSVSAPTLVESLQHVIIKKVAVNSGGKHCLALSSDGEVFSWGEGE 4052

Query: 201  DGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFL 260
            DG++G+  +         + DR                                   P L
Sbjct: 4053 DGKLGHGNR--------DSYDR-----------------------------------PKL 4069

Query: 261  VE---GVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDIN----FH 313
            +E   G+ V+DIACG  HS  +   G +L+ G   YG+LG    +  + P  +     + 
Sbjct: 4070 IEALSGIGVIDIACGSAHSACITSQGHVLTWGKGRYGRLGHGDSEDQLQPKLVEALLGYR 4129

Query: 314  PVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPD--NVPLVVEGLEG 370
             + I+ G G +  +C     NV        SWG     +LGR G D   +P+ +E L G
Sbjct: 4130 AIDIACGSGDAQTLCITDDDNVW-------SWGDGDYGKLGRGGSDGCKIPMKIESLAG 4181



 Score = 60.8 bits (146), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 81/307 (26%), Positives = 134/307 (43%), Gaps = 31/307 (10%)

Query: 85   VWAWGRNNEVQLG--RGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWV 142
            V  WG N++ QLG  +G+     T++    +  L  +++     S  +   +  DG L+ 
Sbjct: 2894 VLVWGLNDKEQLGGLKGSKVKLPTYSS--VLSQLKPIHIAGGSKSLFI---VSQDGKLYA 2948

Query: 143  WGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWG--HALAQTEDGKLFGWGYSA 200
             G+   G+LGLG +      P +V  L    + KV+   G  HA+A T DGK+F WG   
Sbjct: 2949 CGEGTNGRLGLGHN-NNVPTPRQVPILNQYVVKKVAVHSGGKHAMALTLDGKVFSWGEGE 3007

Query: 201  DGRIGNLGK-ALESSPLDSNIDRSSESDQEISSS---TIEKAQKLVSEGMEKEKYM---- 252
            DG++G+  +  LE   L  ++      D    SS    I  + +L + G+ +   +    
Sbjct: 3008 DGKLGHGNRLTLEKPKLIESLRTKRVRDIACGSSHSAAITSSGELYTWGLGEYGRLGHGD 3067

Query: 253  -PIIWEPFLV---EGVEVVDIACGFD--HSLVLGRNGVLLSCGSNVYGQLGREKQDMGMF 306
                 +P LV   +G  VV +ACG     +L L   G++ S G   +G+LGR   +    
Sbjct: 3068 NCTQLKPKLVTTLQGHRVVQVACGSRDAQTLCLTEEGLVFSWGDGDFGKLGRGGSEGCSV 3127

Query: 307  PVDINFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPDNV--PLV 364
            P     H V   + +G     C  + S     +  + +WG     +LG     +V  P  
Sbjct: 3128 P-----HQVERLNSVGVMQIECGAQFSLALTKSGEVWTWGKGDYYRLGHGTDQHVRKPTP 3182

Query: 365  VEGLEGE 371
            ++GL G+
Sbjct: 3183 IQGLRGK 3189



 Score = 57.8 bits (138), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 78/310 (25%), Positives = 126/310 (40%), Gaps = 57/310 (18%)

Query: 69   VSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNV--CAAFA 126
            ++ G     AVT +G ++A G     +LG G  +S +    P  VE L  V +   A  +
Sbjct: 3975 IAGGEQTLYAVTPDGKLYATGYGAGGRLGIGGTDSVSA---PTLVESLQHVIIKKVAVNS 4031

Query: 127  SGVVSSAIGDDGSLWVWGKSKRGQLGLG-KDITEAIVPSRVEALAGEKIVKVSFGWGHAL 185
             G    A+  DG ++ WG+ + G+LG G +D  +   P  +EAL+G  ++ ++ G  H+ 
Sbjct: 4032 GGKHCLALSSDGEVFSWGEGEDGKLGHGNRDSYDR--PKLIEALSGIGVIDIACGSAHSA 4089

Query: 186  AQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEG 245
              T  G +  WG    GR+G+                                      G
Sbjct: 4090 CITSQGHVLTWGKGRYGRLGH--------------------------------------G 4111

Query: 246  MEKEKYMPIIWEPFLVEGVEVVDIACGF--DHSLVLGRNGVLLSCGSNVYGQLGREKQDM 303
              +++  P + E  L  G   +DIACG     +L +  +  + S G   YG+LGR   D 
Sbjct: 4112 DSEDQLQPKLVEALL--GYRAIDIACGSGDAQTLCITDDDNVWSWGDGDYGKLGRGGSDG 4169

Query: 304  GMFPVDINFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPDNV-- 361
               P+ I        +GLG     C  + S     +  + +WG     +LG    D+V  
Sbjct: 4170 CKIPMKIES-----LAGLGVIKVECGSQFSVALTRSGSVYTWGKGDYHRLGHGNTDHVRR 4224

Query: 362  PLVVEGLEGE 371
            P  V  L+G+
Sbjct: 4225 PKKVAALQGK 4234



 Score = 54.3 bits (129), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 67/270 (24%), Positives = 113/270 (41%), Gaps = 58/270 (21%)

Query: 110 PKRVEGLDQVNVC--AAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVE 167
           PK  EGL+ V+V   AA   G     +     +W WG    G+LG G  +++   P+ + 
Sbjct: 557 PKAFEGLEGVHVVQIAAHCEGKHVMVLSSANEVWSWGAGDGGRLGHGDTVSKE-HPTMIV 615

Query: 168 ALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESD 227
            L  +++  +  G  ++ A T  G+LF WG    GR+G+                   SD
Sbjct: 616 GLHEKQVCGIYCGASYSAAITIAGELFTWGRGTYGRLGH-----------------GNSD 658

Query: 228 QEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGF--DHSLVLGRNGVL 285
            ++  + ++                        ++  +VVD+A G    HS+ +  NG+L
Sbjct: 659 DKLVPTQVQA-----------------------LKSYKVVDVALGSGDAHSMCVTDNGLL 695

Query: 286 LSCGSNVYGQLGREKQDMGMFPVDIN--FHPVSISSGLGHSLAICEVRSSNVTGGARGIV 343
            + G   +G+LG    +    PV I+   +   I SG   S+A+    S + T     + 
Sbjct: 696 FAWGDGDFGKLGNGSCNGSPIPVQIDTLVNVSRIYSGSQFSVAL----SCDGT-----LY 746

Query: 344 SWGWNRSSQLGRMGPD--NVPLVVEGLEGE 371
           +WG     +LG    +  NVP +V  LEG+
Sbjct: 747 TWGKGHGGRLGHGNSEHSNVPKLVRALEGK 776


>gi|432863735|ref|XP_004070156.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC3-like [Oryzias
           latipes]
          Length = 1080

 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 80/268 (29%), Positives = 121/268 (45%), Gaps = 47/268 (17%)

Query: 66  VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAF 125
           VT V+ G  H++ ++ +G V+ WG+N+  QLG G  E  ++ + P+ V  L  + V    
Sbjct: 124 VTQVACGSQHTVVLSKDGQVYTWGQNSRGQLGLGK-EGCSSISSPQCVRSLSSMPVVQVS 182

Query: 126 ASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHAL 185
           A G  S A+   GS++ WG++  GQLGLG D T+   P+ V  L  +K V  + G  H  
Sbjct: 183 AGGDHSFALSVSGSVFGWGRNDCGQLGLG-DTTDRETPTLVHYLNMKKTVFAACGKDHTA 241

Query: 186 AQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEG 245
             T DG +F +G    G  G LG     + L                       +LV+E 
Sbjct: 242 VLTMDGTVFTFG---SGHYGQLGHNSFRNAL---------------------CPRLVAE- 276

Query: 246 MEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGM 305
                    +W      G +V  IACG  H+LVL  +  + S G N +GQLG  ++    
Sbjct: 277 ---------LW------GAKVTKIACGRYHTLVLTDHMKVYSFGCNEHGQLGPREETHPC 321

Query: 306 FPVDINFH---PV--SISSGLGHSLAIC 328
            P+ +      P+  +I +G   S A C
Sbjct: 322 VPLPVQLPREGPIIQNIFAGGDSSFATC 349



 Score = 75.1 bits (183), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 64/205 (31%), Positives = 94/205 (45%), Gaps = 12/205 (5%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGG--DAYEPTRVPGLPS-DVTSVSAGHYHSLAVTNNGAV 85
           V ++G  S+G LGL     G  G      P  V  L S  V  VSAG  HS A++ +G+V
Sbjct: 143 VYTWGQNSRGQLGL-----GKEGCSSISSPQCVRSLSSMPVVQVSAGGDHSFALSVSGSV 197

Query: 86  WAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGK 145
           + WGRN+  QLG G    R T   P  V  L+      A      ++ +  DG+++ +G 
Sbjct: 198 FGWGRNDCGQLGLGDTTDRET---PTLVHYLNMKKTVFAACGKDHTAVLTMDGTVFTFGS 254

Query: 146 SKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIG 205
              GQLG       A+ P  V  L G K+ K++ G  H L  T+  K++ +G +  G++G
Sbjct: 255 GHYGQLG-HNSFRNALCPRLVAELWGAKVTKIACGRYHTLVLTDHMKVYSFGCNEHGQLG 313

Query: 206 NLGKALESSPLDSNIDRSSESDQEI 230
              +     PL   + R     Q I
Sbjct: 314 PREETHPCVPLPVQLPREGPIIQNI 338



 Score = 72.4 bits (176), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 70/267 (26%), Positives = 108/267 (40%), Gaps = 62/267 (23%)

Query: 110 PKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAI-VPSRVEA 168
           P+ +E L  + V         +  +  DG ++ WG++ RGQLGLGK+   +I  P  V +
Sbjct: 113 PRSLEALSGITVTQVACGSQHTVVLSKDGQVYTWGQNSRGQLGLGKEGCSSISSPQCVRS 172

Query: 169 LAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQ 228
           L+   +V+VS G  H+ A +  G +FGWG +  G++G          L    DR +    
Sbjct: 173 LSSMPVVQVSAGGDHSFALSVSGSVFGWGRNDCGQLG----------LGDTTDRET---- 218

Query: 229 EISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGV---EVVDIACGFDHSLVLGRNGVL 285
                                        P LV  +   + V  ACG DH+ VL  +G +
Sbjct: 219 -----------------------------PTLVHYLNMKKTVFAACGKDHTAVLTMDGTV 249

Query: 286 LSCGSNVYGQLGREKQDMGMFPVDIN----FHPVSISSGLGHSLAICEVRSSNVTGGARG 341
            + GS  YGQLG       + P  +          I+ G  H+L + +            
Sbjct: 250 FTFGSGHYGQLGHNSFRNALCPRLVAELWGAKVTKIACGRYHTLVLTD---------HMK 300

Query: 342 IVSWGWNRSSQLGRMGPDN--VPLVVE 366
           + S+G N   QLG     +  VPL V+
Sbjct: 301 VYSFGCNEHGQLGPREETHPCVPLPVQ 327


>gi|5823976|emb|CAB54002.1| RPGR protein [Homo sapiens]
 gi|119579848|gb|EAW59444.1| retinitis pigmentosa GTPase regulator, isoform CRA_d [Homo sapiens]
          Length = 646

 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 79/267 (29%), Positives = 124/267 (46%), Gaps = 51/267 (19%)

Query: 32  FGDGSQGALGLPTSLTGVGGDAYEPTRVPGL-PSDVTSVSAGHYHSLAVTNNGAVWAWGR 90
           FG  + G LGL     G      +PT V  L P  V   + G  H+L  T  G V+A G 
Sbjct: 59  FGSNNWGQLGL-----GSKSAISKPTCVKALKPEKVKLAACGRNHTLVSTEGGNVYATGG 113

Query: 91  NNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQ 150
           NNE QLG G  E R T++         ++   +A ++   S+A+ +DG L++WG +  GQ
Sbjct: 114 NNEGQLGLGDTEERNTFHVISFFTSEHKIKQLSAGSN--TSAALTEDGRLFMWGDNSEGQ 171

Query: 151 LGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKA 210
           +GL K+++   VP +V    G+ +  +S G+ H+   T DG+L+ +G   +G++G   + 
Sbjct: 172 IGL-KNVSNVCVPQQV--TIGKPVSWISCGYYHSAFVTTDGELYVFGEPENGKLGLPNQL 228

Query: 211 LESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIA 270
           L +                       +  +LVSE  EK                 V+ +A
Sbjct: 229 LGN----------------------HRTPQLVSEIPEK-----------------VIQVA 249

Query: 271 CGFDHSLVLGRNGVLLSCGSNVYGQLG 297
           CG +H++VL  N V  + G   +GQLG
Sbjct: 250 CGGEHTVVLTENAV-YTFGLGQFGQLG 275



 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 66/239 (27%), Positives = 101/239 (42%), Gaps = 51/239 (21%)

Query: 69  VSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGL--DQVNVCAAFA 126
           +S G  HS  VT N  ++ +G NN  QLG G   S++  + P  V+ L  ++V + A   
Sbjct: 40  LSCGDEHSAVVTGNNKLYMFGSNNWGQLGLG---SKSAISKPTCVKALKPEKVKLAACGR 96

Query: 127 SGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGE-KIVKVSFGWGHAL 185
           +  + S  G  G+++  G +  GQLGLG D  E      +     E KI ++S G   + 
Sbjct: 97  NHTLVSTEG--GNVYATGGNNEGQLGLG-DTEERNTFHVISFFTSEHKIKQLSAGSNTSA 153

Query: 186 AQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEG 245
           A TEDG+LF WG +++G+IG    +    P    I +                       
Sbjct: 154 ALTEDGRLFMWGDNSEGQIGLKNVSNVCVPQQVTIGK----------------------- 190

Query: 246 MEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMG 304
                  P+ W            I+CG+ HS  +  +G L   G    G+LG   Q +G
Sbjct: 191 -------PVSW------------ISCGYYHSAFVTTDGELYVFGEPENGKLGLPNQLLG 230



 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 53/184 (28%), Positives = 90/184 (48%), Gaps = 18/184 (9%)

Query: 33  GDGSQGALGLPTSLTGVGGDAYEPTRVP-GLPSDVTSVSAGHYHSLAVTNNGAVWAWGRN 91
           GD S+G +GL         +   P +V  G P  V+ +S G+YHS  VT +G ++ +G  
Sbjct: 165 GDNSEGQIGLKNV-----SNVCVPQQVTIGKP--VSWISCGYYHSAFVTTDGELYVFG-- 215

Query: 92  NEVQLGRGALESRATWND--PKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRG 149
            E + G+  L ++   N   P+ V  + +  +    A G   + +  + +++ +G  + G
Sbjct: 216 -EPENGKLGLPNQLLGNHRTPQLVSEIPEKVI--QVACGGEHTVVLTENAVYTFGLGQFG 272

Query: 150 QLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGK 209
           QLGLG  + E   P  +E +  + I  +S G  H    T+ G ++ +G   DGR G LG 
Sbjct: 273 QLGLGTFLFETSEPKVIENIRDQTISYISCGENHTALITDIGLMYTFG---DGRHGKLGL 329

Query: 210 ALES 213
            LE+
Sbjct: 330 GLEN 333


>gi|410973279|ref|XP_003993081.1| PREDICTED: LOW QUALITY PROTEIN: secretion-regulating guanine
           nucleotide exchange factor [Felis catus]
          Length = 462

 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 90/313 (28%), Positives = 137/313 (43%), Gaps = 43/313 (13%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAW 88
           V+S G  S G LG+P            P  +  L   V  ++AG  H+LA T +G V+ W
Sbjct: 122 VLSCGSNSFGQLGVPHGPR----RCVVPQAIELLKEKVVCIAAGLRHALAATASGIVFQW 177

Query: 89  GR---NNEVQLGRG-ALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWG 144
           G    ++  +L  G  L    T  +P RV GL+        A    S+++ D G L+VWG
Sbjct: 178 GTGLASSGRRLCPGQTLPLFLTAKEPSRVTGLENSKATCVLAGSDHSASLTDAGELYVWG 237

Query: 145 KSKRGQLGLGKDITEAIVPSRVEA--LAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADG 202
            +K GQL          +P ++EA     EK+  V  GW H +AQTE G++F WG +  G
Sbjct: 238 SNKHGQLASLAAFLP--LPQKIEAHCFQNEKVTSVWSGWTHLVAQTETGRVFTWGRADYG 295

Query: 203 RIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVE 262
           ++G   ++ E   L S+       D  +  S  +K+             MP         
Sbjct: 296 QLGRKLESREGWKLQSH-------DSSLPCSGPQKS-------------MPSCLHCL--- 332

Query: 263 GVEVVDIACGFDHSL-VLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFHPVS----I 317
                +++CG +H+L V+G  G   S G N +G  G   +     P  +     S    +
Sbjct: 333 -TGAAEVSCGSEHNLAVIG--GTCYSWGWNEHGMCGDGSEANIWAPKPVPSLQSSLGLLV 389

Query: 318 SSGLGHSLAICEV 330
             G GHSLA+C++
Sbjct: 390 GCGAGHSLALCQL 402



 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 67/247 (27%), Positives = 105/247 (42%), Gaps = 58/247 (23%)

Query: 130 VSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVK-VSFGWGHALAQT 188
            S A  +   L+ WG +  GQLGLG    + ++P ++      + V+ ++ G GH+   T
Sbjct: 7   ASEAAHEAAVLFAWGANSYGQLGLGHK-EDVLLPQQLNDFCKPECVRRITGGGGHSAIVT 65

Query: 189 EDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEK 248
           ++G LF  G + DG++G LG                 ++  +  +T              
Sbjct: 66  DEGGLFVCGLNKDGQLG-LG----------------HTEDVLYFTTCRS----------- 97

Query: 249 EKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLG-REKQDMGMFP 307
                       + G  V  +ACG+D +++L  NG +LSCGSN +GQLG        + P
Sbjct: 98  ------------LLGCPVQQVACGWDFTIILTENGQVLSCGSNSFGQLGVPHGPRRCVVP 145

Query: 308 VDINF---HPVSISSGLGHSLAICEVRSSNVTGGARGIV-SWGWNRSSQLGRMGP-DNVP 362
             I       V I++GL H+LA            A GIV  WG   +S   R+ P   +P
Sbjct: 146 QAIELLKEKVVCIAAGLRHALA----------ATASGIVFQWGTGLASSGRRLCPGQTLP 195

Query: 363 LVVEGLE 369
           L +   E
Sbjct: 196 LFLTAKE 202



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 93/372 (25%), Positives = 149/372 (40%), Gaps = 55/372 (14%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGL--PSDVTSVSAGHYHSLAVTNNGAVW 86
           + ++G  S G LGL     G   D   P ++     P  V  ++ G  HS  VT+ G ++
Sbjct: 17  LFAWGANSYGQLGL-----GHKEDVLLPQQLNDFCKPECVRRITGGGGHSAIVTDEGGLF 71

Query: 87  AWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKS 146
             G N + QLG G  E    +   + + G     V   +   ++   + ++G +   G +
Sbjct: 72  VCGLNKDGQLGLGHTEDVLYFTTCRSLLGCPVQQVACGWDFTII---LTENGQVLSCGSN 128

Query: 147 KRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGW--GYSADGRI 204
             GQLG+       +VP  +E L  EK+V ++ G  HALA T  G +F W  G ++ GR 
Sbjct: 129 SFGQLGVPHGPRRCVVPQAIELLK-EKVVCIAAGLRHALAATASGIVFQWGTGLASSGRR 187

Query: 205 GNLGKALESSPLDSNIDRSS-----ESDQEIS-------SSTIEKAQKLVSEGMEKE--- 249
              G+ L   PL       S     E+ +          S+++  A +L   G  K    
Sbjct: 188 LCPGQTL---PLFLTAKEPSRVTGLENSKATCVLAGSDHSASLTDAGELYVWGSNKHGQL 244

Query: 250 ----KYMPIIW--EPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDM 303
                ++P+    E    +  +V  +  G+ H +     G + + G   YGQLGR+ +  
Sbjct: 245 ASLAAFLPLPQKIEAHCFQNEKVTSVWSGWTHLVAQTETGRVFTWGRADYGQLGRKLESR 304

Query: 304 GMFPVDINFHPVSI-SSGLGHSLAIC--------EVRSSN-----VTGGARGIVSWGWNR 349
             +   +  H  S+  SG   S+  C        EV   +     V GG     SWGWN 
Sbjct: 305 EGW--KLQSHDSSLPCSGPQKSMPSCLHCLTGAAEVSCGSEHNLAVIGGT--CYSWGWNE 360

Query: 350 SSQLGRMGPDNV 361
               G     N+
Sbjct: 361 HGMCGDGSEANI 372



 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 81/313 (25%), Positives = 126/313 (40%), Gaps = 54/313 (17%)

Query: 76  SLAVTNNGAVWAWGRNNEVQLGRGALES---RATWNDPKRVEGLDQVNVCAAFASGVVSS 132
           S A      ++AWG N+  QLG G  E        ND  + E + ++        G  S+
Sbjct: 8   SEAAHEAAVLFAWGANSYGQLGLGHKEDVLLPQQLNDFCKPECVRRIT-----GGGGHSA 62

Query: 133 AIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGK 192
            + D+G L+V G +K GQLGLG    + +  +   +L G  + +V+ GW   +  TE+G+
Sbjct: 63  IVTDEGGLFVCGLNKDGQLGLGH-TEDVLYFTTCRSLLGCPVQQVACGWDFTIILTENGQ 121

Query: 193 LFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQE----------------ISSSTIE 236
           +   G ++ G++G     +   P    + ++ E  +E                 S    +
Sbjct: 122 VLSCGSNSFGQLG-----VPHGPRRCVVPQAIELLKEKVVCIAAGLRHALAATASGIVFQ 176

Query: 237 KAQKLVSEG--MEKEKYMPIIW---EPFLVEGVEVVDIAC---GFDHSLVLGRNGVLLSC 288
               L S G  +   + +P+     EP  V G+E     C   G DHS  L   G L   
Sbjct: 177 WGTGLASSGRRLCPGQTLPLFLTAKEPSRVTGLENSKATCVLAGSDHSASLTDAGELYVW 236

Query: 289 GSNVYGQLGREKQDMGMFPVDINFHP------VSISSGLGHSLAICEVRSSNVTGGARGI 342
           GSN +GQL      + + P  I  H        S+ SG  H +A  E            +
Sbjct: 237 GSNKHGQLASLAAFLPL-PQKIEAHCFQNEKVTSVWSGWTHLVAQTETGR---------V 286

Query: 343 VSWGWNRSSQLGR 355
            +WG     QLGR
Sbjct: 287 FTWGRADYGQLGR 299


>gi|281210791|gb|EFA84957.1| regulator of chromosome condensation domain-containing protein
           [Polysphondylium pallidum PN500]
          Length = 1176

 Score = 90.1 bits (222), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 79/251 (31%), Positives = 117/251 (46%), Gaps = 37/251 (14%)

Query: 56  PTRVP------GLP---SDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRAT 106
           P R+P      G+P   S +  VS G+YH + +T  G +W WG N+  QLG G L+  + 
Sbjct: 241 PMRIPLDFLYHGVPTPGSRIKQVSIGNYHIVLLTEAGNIWTWGSNSHGQLGIG-LDVHS- 298

Query: 107 WNDPKRVEGLDQVNVCAAFASGVV-SSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSR 165
            N P++VE    +      A+GV  ++AI + G L++WG ++ G+LGLG D      P+R
Sbjct: 299 -NIPRQVE----LKCIKQIATGVKHTAAINEWGELYMWGINEHGELGLG-DTGIRRSPTR 352

Query: 166 VEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSE 225
           V  L  E +  VS    H++  TE GKL+ W     G+    GK +++ P    I   +E
Sbjct: 353 VAKLKSELVSLVSCSSTHSVCYTESGKLYSW-----GQCDKFGK-IQTVPTIVPIHNYTE 406

Query: 226 SDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVE-------------GVEVVDIACG 272
           SD E        A + ++ G      +  + E FL E             G  V  IA G
Sbjct: 407 SDAEGGGCGGGGAIRAIACGEWLTAALTQLGEVFLWEVSGKPTAIHHLLAGNSVRSIAMG 466

Query: 273 FDHSLVLGRNG 283
             H + L  NG
Sbjct: 467 NFHLICLTDNG 477


>gi|328874090|gb|EGG22456.1| regulator of chromosome condensation domain-containing protein
           [Dictyostelium fasciculatum]
          Length = 464

 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 78/291 (26%), Positives = 126/291 (43%), Gaps = 67/291 (23%)

Query: 65  DVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESR-------------------- 104
           DV S+ AG  HS AVT +G  + WG N E QLG+  +E                      
Sbjct: 209 DVVSMHAGFDHSFAVTKSGHAFGWGYNVEGQLGQKIVEYERVEATGEEKQQDMHDLHKTM 268

Query: 105 ---ATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAI 161
              A +N P  V G++ + V   F     +  +   G+++  G ++ G LGLG+D    I
Sbjct: 269 HPDAEYNTPTLVPGMEAIKVAKVFCGYDCTFLLSARGNVYAMGNNETGTLGLGEDAIGRI 328

Query: 162 VPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNID 221
             +    L  EKI  +S G  H++  +E  K++  G+ A+GR+G                
Sbjct: 329 AKATKVQLP-EKIKSISCGATHSMFLSESNKVYVCGWGAEGRLG---------------- 371

Query: 222 RSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEG-VEVVDIACGFDHSLVLG 280
                   + ++TI              +Y+P +  PF  E  ++V  ++CG  HSL+L 
Sbjct: 372 --------LGNNTI-------------NRYVPTLI-PFFAENRIKVDQVSCGGAHSLLLT 409

Query: 281 RNGVLLSCGSNVYGQLGREKQDMGMFPVDINF----HPVSISSGLGHSLAI 327
            +G + S G    G+LG   +++   P  I F     P+ IS+G+  S+ I
Sbjct: 410 TDGRVYSWGCGEDGKLGHGDEELSNDPKLIQFFENKKPIFISAGVDTSMVI 460



 Score = 79.3 bits (194), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 85/346 (24%), Positives = 145/346 (41%), Gaps = 41/346 (11%)

Query: 32  FGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGH--YHSLAVTNNGAVWAWG 89
           FG  + G LG+ T           PT+V  LP  ++    G     S   TN+  ++ WG
Sbjct: 75  FGSCADGKLGVKTE-----SHRSIPTKVTHLPPFLSVKEGGTTWMSSFLHTNDSKIFMWG 129

Query: 90  RNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRG 149
            NN  Q+G    +      + +  +GLD   V    +  ++   +   G +   G ++ G
Sbjct: 130 TNNHGQMGLPGNQVYRYPTESEMFKGLDIERVALGRSFLLI---LTKQGKVLSIGSNEFG 186

Query: 150 QLGLGKDITEAIVPSRVEALAGEK-IVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLG 208
           QLG+     E      ++ +   K +V +  G+ H+ A T+ G  FGWGY+ +G++G   
Sbjct: 187 QLGISSQ--EQRGSQTLQVVQNLKDVVSMHAGFDHSFAVTKSGHAFGWGYNVEGQLGQ-- 242

Query: 209 KALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVD 268
           K +E   +++  +   +   ++  +    A+                  P LV G+E + 
Sbjct: 243 KIVEYERVEATGEEKQQDMHDLHKTMHPDAEYNT---------------PTLVPGMEAIK 287

Query: 269 IA---CGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMF----PVDINFHPVSISSGL 321
           +A   CG+D + +L   G + + G+N  G LG  +  +G       V +     SIS G 
Sbjct: 288 VAKVFCGYDCTFLLSARGNVYAMGNNETGTLGLGEDAIGRIAKATKVQLPEKIKSISCGA 347

Query: 322 GHSLAICEVRSSNVTG-GARGIVSWGWNRSSQLGRMGPDNVPLVVE 366
            HS+ + E     V G GA G +  G N    + R  P  +P   E
Sbjct: 348 THSMFLSESNKVYVCGWGAEGRLGLGNN---TINRYVPTLIPFFAE 390



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 49/165 (29%), Positives = 80/165 (48%), Gaps = 10/165 (6%)

Query: 56  PTRVPGLPS-DVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRG--ALESRATWNDPKR 112
           PT VPG+ +  V  V  G+  +  ++  G V+A G N    LG G  A+   A     + 
Sbjct: 277 PTLVPGMEAIKVAKVFCGYDCTFLLSARGNVYAMGNNETGTLGLGEDAIGRIAKATKVQL 336

Query: 113 VEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGE 172
            E +  ++ C A  S  +S    +   ++V G    G+LGLG +     VP+ +   A  
Sbjct: 337 PEKIKSIS-CGATHSMFLS----ESNKVYVCGWGAEGRLGLGNNTINRYVPTLIPFFAEN 391

Query: 173 KIV--KVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSP 215
           +I   +VS G  H+L  T DG+++ WG   DG++G+  + L + P
Sbjct: 392 RIKVDQVSCGGAHSLLLTTDGRVYSWGCGEDGKLGHGDEELSNDP 436



 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 56/222 (25%), Positives = 93/222 (41%), Gaps = 55/222 (24%)

Query: 139 SLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVS-FGWGHALAQTEDGKLFGWG 197
           ++W++G    G+LG+  +   +I P++V  L     VK     W  +   T D K+F WG
Sbjct: 71  TVWMFGSCADGKLGVKTESHRSI-PTKVTHLPPFLSVKEGGTTWMSSFLHTNDSKIFMWG 129

Query: 198 YSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWE 257
            +  G++G  G  +   P +S                                       
Sbjct: 130 TNNHGQMGLPGNQVYRYPTESE-------------------------------------- 151

Query: 258 PFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLG---REKQDMGMFPVDINFHP 314
             + +G+++  +A G    L+L + G +LS GSN +GQLG   +E++      V  N   
Sbjct: 152 --MFKGLDIERVALGRSFLLILTKQGKVLSIGSNEFGQLGISSQEQRGSQTLQVVQNLKD 209

Query: 315 -VSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGR 355
            VS+ +G  HS A+ +      +G A G   WG+N   QLG+
Sbjct: 210 VVSMHAGFDHSFAVTK------SGHAFG---WGYNVEGQLGQ 242


>gi|145512133|ref|XP_001441983.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124409255|emb|CAK74586.1| unnamed protein product [Paramecium tetraurelia]
          Length = 2041

 Score = 90.1 bits (222), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 83/295 (28%), Positives = 119/295 (40%), Gaps = 53/295 (17%)

Query: 9   HNHVNVLTSRIFMRSASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTS 68
           H+H   LT           AV  +G GSQG LG      G   D   PT++         
Sbjct: 308 HHHTMALTEE--------GAVFIWGMGSQGCLG-----NGRVDDLETPTQIDISGLFFNE 354

Query: 69  VSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNV-CAAFAS 127
           ++AG YHSLA+  N  V+ WG NN  QLG G  E++     PK++   D+  + C     
Sbjct: 355 IAAGAYHSLALAKNNQVYGWGVNNRGQLGIGNKENQLL---PKQLTFFDRKKIQCQYLYC 411

Query: 128 GVVSSA-IGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALA 186
           G   SA I  +  L+ WG     +LG G  + E + P ++E L    ++ V+ G  H+L 
Sbjct: 412 GDQHSACITTNKELYTWGNGDYYRLGHGMLLDE-MEPKKIEILQDVYVLDVALGTIHSLC 470

Query: 187 QTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGM 246
            T +G ++ WG S D  +G                      Q+    T+ +   L+S+  
Sbjct: 471 ITNEGFVYAWGSSKDSVLG-------------------MPTQQYKDQTLPQRVGLMSQSF 511

Query: 247 EKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQ 301
               +                 +A G  HSL L  NG L   GSN    LG   Q
Sbjct: 512 RDASFY---------------QVAAGTSHSLSLSENGHLYVWGSNKNSLLGVRLQ 551



 Score = 66.2 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 75/313 (23%), Positives = 129/313 (41%), Gaps = 80/313 (25%)

Query: 61  GLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVN 120
            L  +   +  GH+H++A+T  GAV+ WG  ++  LG G ++          +E   Q++
Sbjct: 296 ALKQEFVKIVCGHHHTMALTEEGAVFIWGMGSQGCLGNGRVDD---------LETPTQID 346

Query: 121 VCAAF----ASGVVSS-AIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKI- 174
           +   F    A+G   S A+  +  ++ WG + RGQLG+G    + ++P ++     +KI 
Sbjct: 347 ISGLFFNEIAAGAYHSLALAKNNQVYGWGVNNRGQLGIGNKENQ-LLPKQLTFFDRKKIQ 405

Query: 175 -VKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSS 233
              +  G  H+   T + +L+ WG     R+G+ G  L+                E+   
Sbjct: 406 CQYLYCGDQHSACITTNKELYTWGNGDYYRLGH-GMLLD----------------EMEPK 448

Query: 234 TIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVY 293
            IE                       +++ V V+D+A G  HSL +   G + + GS+  
Sbjct: 449 KIE-----------------------ILQDVYVLDVALGTIHSLCITNEGFVYAWGSSKD 485

Query: 294 GQLGREKQD------------MGMFPVDINFHPVSISSGLGHSLAICEVRSSNVTGGARG 341
             LG   Q             M     D +F+ V  ++G  HSL++ E     V      
Sbjct: 486 SVLGMPTQQYKDQTLPQRVGLMSQSFRDASFYQV--AAGTSHSLSLSENGHLYV------ 537

Query: 342 IVSWGWNRSSQLG 354
              WG N++S LG
Sbjct: 538 ---WGSNKNSLLG 547



 Score = 66.2 bits (160), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 63/243 (25%), Positives = 116/243 (47%), Gaps = 23/243 (9%)

Query: 69  VSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEG-LDQVNVCAAFAS 127
           +S  + H +AVT  G  + WG N   QLG G  +S   +  P  +EG ++Q  +  A   
Sbjct: 693 ISCQYNHCIAVTAKGNAYCWGSNQYNQLGLG-FQSDHVFT-PILLEGAIEQKVIIMAITG 750

Query: 128 GVVSSAIGDDGSLWVWGKSKRGQLGLG-KDITEAIVPSRVEALAGEKIVKVSFGWGHALA 186
              S+ + D G +W +G S+ G LG   K+    + P  +  +    ++ ++       A
Sbjct: 751 EKFSALLTDQGEVWSFGTSEFGVLGHELKNFYVIMEPRMINDIP--SMINLACSNQTMFA 808

Query: 187 QTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGM 246
             +  +L+ WG   + + G LG +L+    + N+    ++++++SS  +E   +L S   
Sbjct: 809 IDQKQQLWAWG---NNQFGQLGISLQRDEEEINL----QTNKQVSSEFLEWKAQLKSL-K 860

Query: 247 EKEKYMPIIWEP-----FLVEGVEVVD-IACGFDHSLVLGRNGVLLSCGSNVY-GQLGRE 299
             E+Y  I+++P       + G   VD ++CG  H+ ++  N  LL+CG   Y G   +E
Sbjct: 861 NPERY--IVYQPDKPSTRSITGEAFVDQVSCGLYHTCIITTNQELLTCGLAKYAGHQSQE 918

Query: 300 KQD 302
            +D
Sbjct: 919 PED 921



 Score = 42.0 bits (97), Expect = 0.46,   Method: Composition-based stats.
 Identities = 43/176 (24%), Positives = 75/176 (42%), Gaps = 22/176 (12%)

Query: 196 WGYSADGRIGN-LGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPI 254
           WG  A+GR+G    K    S   +  + ++ S  + +S  +++  +  ++ ++  +Y   
Sbjct: 225 WGNPANGRLGAPKSKFPNESDKQTIFNNNNPSQMDFTSRQMQQPSR--TQQVQNSQYNLN 282

Query: 255 IWEPFLVEGV-------EVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFP 307
             EP   + +       E V I CG  H++ L   G +   G    G LG  + D    P
Sbjct: 283 QAEPNNSDFIQPIALKQEFVKIVCGHHHTMALTEEGAVFIWGMGSQGCLGNGRVDDLETP 342

Query: 308 VDINFHPV---SISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPDN 360
             I+   +    I++G  HSLA+   +++ V G       WG N   QLG    +N
Sbjct: 343 TQIDISGLFFNEIAAGAYHSLAL--AKNNQVYG-------WGVNNRGQLGIGNKEN 389


>gi|397488796|ref|XP_003815430.1| PREDICTED: X-linked retinitis pigmentosa GTPase regulator [Pan
           paniscus]
          Length = 815

 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 79/267 (29%), Positives = 124/267 (46%), Gaps = 51/267 (19%)

Query: 32  FGDGSQGALGLPTSLTGVGGDAYEPTRVPGL-PSDVTSVSAGHYHSLAVTNNGAVWAWGR 90
           FG  + G LGL     G      +PT V  L P  V   + G  H+L  T  G V+A G 
Sbjct: 59  FGSNNWGQLGL-----GSKSAVSKPTCVKALKPEKVKLAACGRNHTLVSTEGGNVYATGG 113

Query: 91  NNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQ 150
           NNE QLG G  E R T++         ++   +A ++   S+A+ +DG L++WG +  GQ
Sbjct: 114 NNEGQLGLGDTEERNTFHVISFFTSEHKIKQLSAGSN--TSAALTEDGRLFMWGDNSEGQ 171

Query: 151 LGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKA 210
           +GL K+++   VP +V    G+ +  +S G+ H+   T DG+L+ +G   +G++G   + 
Sbjct: 172 IGL-KNVSNVCVPQQV--TIGKPVSWISCGYYHSAFVTTDGELYVFGEPENGKLGLPNQL 228

Query: 211 LESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIA 270
           L +                       +  +LVSE  EK                 V+ +A
Sbjct: 229 LGN----------------------HRTPQLVSEIPEK-----------------VIQVA 249

Query: 271 CGFDHSLVLGRNGVLLSCGSNVYGQLG 297
           CG +H++VL  N V  + G   +GQLG
Sbjct: 250 CGGEHTVVLTENAV-YTFGLGQFGQLG 275



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 66/239 (27%), Positives = 101/239 (42%), Gaps = 51/239 (21%)

Query: 69  VSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGL--DQVNVCAAFA 126
           +S G  HS  VT N  ++ +G NN  QLG G   S++  + P  V+ L  ++V + A   
Sbjct: 40  LSCGDEHSAVVTGNNKLYMFGSNNWGQLGLG---SKSAVSKPTCVKALKPEKVKLAACGR 96

Query: 127 SGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGE-KIVKVSFGWGHAL 185
           +  + S  G  G+++  G +  GQLGLG D  E      +     E KI ++S G   + 
Sbjct: 97  NHTLVSTEG--GNVYATGGNNEGQLGLG-DTEERNTFHVISFFTSEHKIKQLSAGSNTSA 153

Query: 186 AQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEG 245
           A TEDG+LF WG +++G+IG    +    P    I +                       
Sbjct: 154 ALTEDGRLFMWGDNSEGQIGLKNVSNVCVPQQVTIGK----------------------- 190

Query: 246 MEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMG 304
                  P+ W            I+CG+ HS  +  +G L   G    G+LG   Q +G
Sbjct: 191 -------PVSW------------ISCGYYHSAFVTTDGELYVFGEPENGKLGLPNQLLG 230



 Score = 59.3 bits (142), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 53/184 (28%), Positives = 90/184 (48%), Gaps = 18/184 (9%)

Query: 33  GDGSQGALGLPTSLTGVGGDAYEPTRVP-GLPSDVTSVSAGHYHSLAVTNNGAVWAWGRN 91
           GD S+G +GL         +   P +V  G P  V+ +S G+YHS  VT +G ++ +G  
Sbjct: 165 GDNSEGQIGLKNV-----SNVCVPQQVTIGKP--VSWISCGYYHSAFVTTDGELYVFG-- 215

Query: 92  NEVQLGRGALESRATWND--PKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRG 149
            E + G+  L ++   N   P+ V  + +  +    A G   + +  + +++ +G  + G
Sbjct: 216 -EPENGKLGLPNQLLGNHRTPQLVSEIPEKVI--QVACGGEHTVVLTENAVYTFGLGQFG 272

Query: 150 QLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGK 209
           QLGLG  + E   P  +E +  + I  +S G  H    T+ G ++ +G   DGR G LG 
Sbjct: 273 QLGLGTFLFETSEPKVIENIRDQTISYISCGENHTALITDIGLMYTFG---DGRHGKLGL 329

Query: 210 ALES 213
            LE+
Sbjct: 330 GLEN 333


>gi|307106699|gb|EFN54944.1| hypothetical protein CHLNCDRAFT_134694 [Chlorella variabilis]
          Length = 434

 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 63/168 (37%), Positives = 90/168 (53%), Gaps = 9/168 (5%)

Query: 52  DAYEPTRVPGLPS-DVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDP 110
           D + PT   GL    V  V+ G  HS+AV   GA++ WG     QL +G    R     P
Sbjct: 206 DRHLPTLAKGLEGVKVAQVNCGWRHSIAVDEGGAMYTWGWGAYAQLMQG---DRKDHYVP 262

Query: 111 KRVEGLDQVNVCAAFASGVVSSAIGD-DGSLWVWGKSKRGQLGLGKDITEAIVPSRVEAL 169
           KRVE + QV   A  A G   +   D  G L+  G +K GQ G+G +  + +   +VEAL
Sbjct: 263 KRVEAVQQV---ATVAGGWRHTMAADSQGRLFASGWNKFGQCGVGHN-EDVVRVQQVEAL 318

Query: 170 AGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLD 217
           AGE++V+V  GW H +A T  GK F WG + +G++G+ G    +SP++
Sbjct: 319 AGERVVQVKSGWKHTMAVTHTGKFFSWGRNVNGQLGHSGMQDSNSPVE 366



 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 76/299 (25%), Positives = 133/299 (44%), Gaps = 32/299 (10%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLP-SDVTSVSAGHYHSLAVTNNGAVWA 87
           V S+G G  G LG     TG   D + P  +P L    V SV+ G  H+L  T  G ++A
Sbjct: 84  VYSWGWGDFGRLG-----TGDVKDVFIPCPLPALAGRRVASVACGDTHTLVATAEGQLFA 138

Query: 88  WGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSK 147
           +GRN   Q G G+++      +P+ V  L    V A       S  +  +G ++ WG  +
Sbjct: 139 FGRNQNGQCGLGSIQDCL---EPQLVTALQGKEVVAVACGAEHSMCVTSEGEVYCWGWGR 195

Query: 148 RGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNL 207
            G +G G+   +  +P+  + L G K+ +V+ GW H++A  E G ++ WG+ A  ++   
Sbjct: 196 YGNIGDGES-QDRHLPTLAKGLEGVKVAQVNCGWRHSIAVDEGGAMYTWGWGAYAQL--- 251

Query: 208 GKALESSPLDSNIDRSSESDQEISS--------STIEKAQKLVSEGMEKEKYMPI----- 254
              ++    D  + +  E+ Q++++           +   +L + G  K     +     
Sbjct: 252 ---MQGDRKDHYVPKRVEAVQQVATVAGGWRHTMAADSQGRLFASGWNKFGQCGVGHNED 308

Query: 255 ---IWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDI 310
              + +   + G  VV +  G+ H++ +   G   S G NV GQLG         PV++
Sbjct: 309 VVRVQQVEALAGERVVQVKSGWKHTMAVTHTGKFFSWGRNVNGQLGHSGMQDSNSPVEL 367



 Score = 85.1 bits (209), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 84/329 (25%), Positives = 150/329 (45%), Gaps = 37/329 (11%)

Query: 65  DVTSVSAGHYHSLAVTNNGA---VWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNV 121
           +V  ++ G  HSLA+ +  +   V +WGR  + QLG G  E R    +P+ V  L     
Sbjct: 8   EVIGLACGSSHSLALISTPSGSMVLSWGRGEDGQLGHGDAEDR---QEPQAVFSLLHRGA 64

Query: 122 CAAFASGVVSSAI-GDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFG 180
            +       S A+ G D  ++ WG    G+LG G D+ +  +P  + ALAG ++  V+ G
Sbjct: 65  TSVHCGAEYSMAVAGGDKQVYSWGWGDFGRLGTG-DVKDVFIPCPLPALAGRRVASVACG 123

Query: 181 WGHALAQTEDGKLFGWGYSADGR--IGNLGKALES---SPLDSNIDRSSESDQEISSSTI 235
             H L  T +G+LF +G + +G+  +G++   LE    + L      +     E S    
Sbjct: 124 DTHTLVATAEGQLFAFGRNQNGQCGLGSIQDCLEPQLVTALQGKEVVAVACGAEHSMCVT 183

Query: 236 EKAQKL---------VSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLL 286
            + +           + +G  +++++P + +    EGV+V  + CG+ HS+ +   G + 
Sbjct: 184 SEGEVYCWGWGRYGNIGDGESQDRHLPTLAKGL--EGVKVAQVNCGWRHSIAVDEGGAMY 241

Query: 287 SCGSNVYGQLGREKQDMGMFP--VDINFHPVSISSGLGHSLAICEVRSSNVTGGARGIVS 344
           + G   Y QL +  +     P  V+      +++ G  H++A      ++  G    + +
Sbjct: 242 TWGWGAYAQLMQGDRKDHYVPKRVEAVQQVATVAGGWRHTMA------ADSQG---RLFA 292

Query: 345 WGWNRSSQLGRMGPDNVPLV--VEGLEGE 371
            GWN+  Q G    ++V  V  VE L GE
Sbjct: 293 SGWNKFGQCGVGHNEDVVRVQQVEALAGE 321


>gi|158257096|dbj|BAF84521.1| unnamed protein product [Homo sapiens]
          Length = 815

 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 79/267 (29%), Positives = 124/267 (46%), Gaps = 51/267 (19%)

Query: 32  FGDGSQGALGLPTSLTGVGGDAYEPTRVPGL-PSDVTSVSAGHYHSLAVTNNGAVWAWGR 90
           FG  + G LGL     G      +PT V  L P  V   + G  H+L  T  G V+A G 
Sbjct: 59  FGSNNWGQLGL-----GSKSAVSKPTCVKALKPEKVKLAACGRNHTLVSTEGGNVYATGG 113

Query: 91  NNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQ 150
           NNE QLG G  E R T++         ++   +A ++   S+A+ +DG L++WG +  GQ
Sbjct: 114 NNEGQLGLGDTEERNTFHVISFFTSEHKIKQLSAGSN--TSAALTEDGRLFMWGDNSEGQ 171

Query: 151 LGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKA 210
           +GL K+++   VP +V    G+ +  +S G+ H+   T DG+L+ +G   +G++G   + 
Sbjct: 172 IGL-KNVSNVCVPQQV--TIGKPVSWISCGYYHSAFVTTDGELYVFGEPENGKLGLPNQL 228

Query: 211 LESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIA 270
           L +                       +  +LVSE  EK                 V+ +A
Sbjct: 229 LGN----------------------HRTPQLVSEIPEK-----------------VIQVA 249

Query: 271 CGFDHSLVLGRNGVLLSCGSNVYGQLG 297
           CG +H++VL  N V  + G   +GQLG
Sbjct: 250 CGGEHTVVLTENAV-YTFGLGQFGQLG 275



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 66/239 (27%), Positives = 101/239 (42%), Gaps = 51/239 (21%)

Query: 69  VSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGL--DQVNVCAAFA 126
           +S G  HS  VT N  ++ +G NN  QLG G   S++  + P  V+ L  ++V + A   
Sbjct: 40  LSCGDEHSAVVTGNNKLYMFGSNNWGQLGLG---SKSAVSKPTCVKALKPEKVKLAACGR 96

Query: 127 SGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGE-KIVKVSFGWGHAL 185
           +  + S  G  G+++  G +  GQLGLG D  E      +     E KI ++S G   + 
Sbjct: 97  NHTLVSTEG--GNVYATGGNNEGQLGLG-DTEERNTFHVISFFTSEHKIKQLSAGSNTSA 153

Query: 186 AQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEG 245
           A TEDG+LF WG +++G+IG    +    P    I +                       
Sbjct: 154 ALTEDGRLFMWGDNSEGQIGLKNVSNVCVPQQVTIGK----------------------- 190

Query: 246 MEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMG 304
                  P+ W            I+CG+ HS  +  +G L   G    G+LG   Q +G
Sbjct: 191 -------PVSW------------ISCGYYHSAFVTTDGELYVFGEPENGKLGLPNQLLG 230



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 53/184 (28%), Positives = 90/184 (48%), Gaps = 18/184 (9%)

Query: 33  GDGSQGALGLPTSLTGVGGDAYEPTRVP-GLPSDVTSVSAGHYHSLAVTNNGAVWAWGRN 91
           GD S+G +GL         +   P +V  G P  V+ +S G+YHS  VT +G ++ +G  
Sbjct: 165 GDNSEGQIGLKNV-----SNVCVPQQVTIGKP--VSWISCGYYHSAFVTTDGELYVFG-- 215

Query: 92  NEVQLGRGALESRATWND--PKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRG 149
            E + G+  L ++   N   P+ V  + +  +    A G   + +  + +++ +G  + G
Sbjct: 216 -EPENGKLGLPNQLLGNHRTPQLVSEIPEKVI--QVACGGEHTVVLTENAVYTFGLGQFG 272

Query: 150 QLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGK 209
           QLGLG  + E   P  +E +  + I  +S G  H    T+ G ++ +G   DGR G LG 
Sbjct: 273 QLGLGTFLFETSEPKVIENIRDQTISYISCGENHTALITDIGLMYTFG---DGRHGKLGL 329

Query: 210 ALES 213
            LE+
Sbjct: 330 GLEN 333


>gi|403350728|gb|EJY74833.1| hypothetical protein OXYTRI_03788 [Oxytricha trifallax]
          Length = 1271

 Score = 90.1 bits (222), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 58/181 (32%), Positives = 96/181 (53%), Gaps = 12/181 (6%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAW 88
           V S+G G+  A+G   S   +     +P R       +  ++ G  HSL +T+   V+AW
Sbjct: 468 VFSYGSGTFSAVGHGGSKGQLNPTVLKPLR----DKRIVQIACGENHSLVLTDKADVFAW 523

Query: 89  GRNNEVQLG-RGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSK 147
           GR  E QLG   ++E  +T   P+ ++      V    A    S AI  DGS+W WG++K
Sbjct: 524 GRGFEGQLGLSKSIEIAST---PQYIKSFYGKPVSYIAAGSQYSLAITKDGSVWGWGEAK 580

Query: 148 RGQLGLGKDITEAIVPSRV---EALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRI 204
            GQLG+GK   E  +P+++   +    +  ++ S G+GH+ A T++G L+ WG++  G++
Sbjct: 581 LGQLGMGKQ-REVRLPTKISFGDDENAKNFIQCSAGYGHSAALTQEGHLYTWGFNNFGQL 639

Query: 205 G 205
           G
Sbjct: 640 G 640



 Score = 80.1 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 65/248 (26%), Positives = 111/248 (44%), Gaps = 44/248 (17%)

Query: 68  SVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESR--ATWNDPKRVEGLDQVNVCAAF 125
           SVS+G  HSL +T +G V+++G      +G G  + +   T   P R + + Q+  C   
Sbjct: 451 SVSSGRNHSLHLTRDGDVFSYGSGTFSAVGHGGSKGQLNPTVLKPLRDKRIVQI-ACGEN 509

Query: 126 ASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHAL 185
            S V++    D   ++ WG+   GQLGL K I  A  P  +++  G+ +  ++ G  ++L
Sbjct: 510 HSLVLT----DKADVFAWGRGFEGQLGLSKSIEIASTPQYIKSFYGKPVSYIAAGSQYSL 565

Query: 186 AQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEG 245
           A T+DG ++GWG +  G++G +GK            R      +IS    E A+  +   
Sbjct: 566 AITKDGSVWGWGEAKLGQLG-MGK-----------QREVRLPTKISFGDDENAKNFIQ-- 611

Query: 246 MEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGM 305
                                   + G+ HS  L + G L + G N +GQLG+   +   
Sbjct: 612 -----------------------CSAGYGHSAALTQEGHLYTWGFNNFGQLGQNNFETQW 648

Query: 306 FPVDINFH 313
            P  +++H
Sbjct: 649 TPSKVHYH 656



 Score = 44.7 bits (104), Expect = 0.081,   Method: Composition-based stats.
 Identities = 54/209 (25%), Positives = 83/209 (39%), Gaps = 66/209 (31%)

Query: 163 PSRVEALAGE---------KIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALES 213
           PSR + + G           ++ VS G  H+L  T DG +F +G      +G+       
Sbjct: 429 PSRTQQIEGNGATSGGSMGHLLSVSSGRNHSLHLTRDGDVFSYGSGTFSAVGH------- 481

Query: 214 SPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGF 273
                                          G  K +  P + +P  +    +V IACG 
Sbjct: 482 -------------------------------GGSKGQLNPTVLKP--LRDKRIVQIACGE 508

Query: 274 DHSLVLGRNGVLLSCGSNVYGQLGREKQ-DMGMFPVDI-NFH--PVS-ISSGLGHSLAIC 328
           +HSLVL     + + G    GQLG  K  ++   P  I +F+  PVS I++G  +SLAI 
Sbjct: 509 NHSLVLTDKADVFAWGRGFEGQLGLSKSIEIASTPQYIKSFYGKPVSYIAAGSQYSLAIT 568

Query: 329 EVRSSNVTGGARGIVSWGWNRSSQLGRMG 357
           +  S            WGW   ++LG++G
Sbjct: 569 KDGS-----------VWGWGE-AKLGQLG 585



 Score = 38.1 bits (87), Expect = 6.3,   Method: Composition-based stats.
 Identities = 25/75 (33%), Positives = 36/75 (48%), Gaps = 9/75 (12%)

Query: 32  FGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRN 91
            G G Q  + LPT ++  G D            +    SAG+ HS A+T  G ++ WG N
Sbjct: 584 LGMGKQREVRLPTKIS-FGDDEN--------AKNFIQCSAGYGHSAALTQEGHLYTWGFN 634

Query: 92  NEVQLGRGALESRAT 106
           N  QLG+   E++ T
Sbjct: 635 NFGQLGQNNFETQWT 649


>gi|23271234|gb|AAH38104.1| RCBTB1 protein [Homo sapiens]
          Length = 355

 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 54/162 (33%), Positives = 88/162 (54%), Gaps = 5/162 (3%)

Query: 62  LPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNV 121
           L   V  V+ G +HS+A+  +G V+AWG NN  Q+G G+  ++ T   P++V     +  
Sbjct: 126 LIKQVVEVACGSHHSMALAADGEVFAWGYNNCGQVGSGSTANQPT---PRKVTNCLHIKR 182

Query: 122 CAAFASGVVSS-AIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFG 180
               A G  SS A+ D+G ++ WG +  GQLGLG +  + + P RV AL    + ++  G
Sbjct: 183 VVGIACGQTSSMAVLDNGEVYGWGYNGNGQLGLGNNGNQ-LTPVRVAALHSVCVNQIVCG 241

Query: 181 WGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDR 222
           + H LA T++G L+ WG +  G++G   K    SP    +++
Sbjct: 242 YAHTLALTDEGLLYAWGANTYGQLGTGNKNNLLSPAHIMVEK 283



 Score = 77.8 bits (190), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 73/293 (24%), Positives = 114/293 (38%), Gaps = 67/293 (22%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLP-SDVTSVSAGH-YHSLAVTNNGAVW 86
           V  FG      LG     TG       P ++ GL    + S+S G   H L  T +G V+
Sbjct: 43  VFVFGLNYSNCLG-----TGDNQSTLVPKKLEGLCGKKIKSLSYGSGPHVLLSTEDGVVY 97

Query: 87  AWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVV---------SSAIGDD 137
           AWG N   QLG G              +G+  V VC       V         S A+  D
Sbjct: 98  AWGHNGYSQLGNGTTN-----------QGIATVQVCTNLLIKQVVEVACGSHHSMALAAD 146

Query: 138 GSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWG 197
           G ++ WG +  GQ+G G    +         L  +++V ++ G   ++A  ++G+++GWG
Sbjct: 147 GEVFAWGYNNCGQVGSGSTANQPTPRKVTNCLHIKRVVGIACGQTSSMAVLDNGEVYGWG 206

Query: 198 YSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWE 257
           Y+ +G++G                                       G    +  P+   
Sbjct: 207 YNGNGQLG--------------------------------------LGNNGNQLTPV--R 226

Query: 258 PFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDI 310
              +  V V  I CG+ H+L L   G+L + G+N YGQLG   ++  + P  I
Sbjct: 227 VAALHSVCVNQIVCGYAHTLALTDEGLLYAWGANTYGQLGTGNKNNLLSPAHI 279



 Score = 65.1 bits (157), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 69/274 (25%), Positives = 119/274 (43%), Gaps = 37/274 (13%)

Query: 110 PKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEAL 169
           P+ +  + +V V    AS  +   + D+  ++V+G +    LG G D    +VP ++E L
Sbjct: 15  PQEIASIRKVCVFGTSASEALY--VTDNDEVFVFGLNYSNCLGTG-DNQSTLVPKKLEGL 71

Query: 170 AGEKIVKVSFGWG-HALAQTEDGKLFGWGYSADGRIGN----------------LGKALE 212
            G+KI  +S+G G H L  TEDG ++ WG++   ++GN                L K + 
Sbjct: 72  CGKKIKSLSYGSGPHVLLSTEDGVVYAWGHNGYSQLGNGTTNQGIATVQVCTNLLIKQVV 131

Query: 213 SSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACG 272
                S+   +  +D E+ +       ++ S     +     +     ++   VV IACG
Sbjct: 132 EVACGSHHSMALAADGEVFAWGYNNCGQVGSGSTANQPTPRKVTNCLHIK--RVVGIACG 189

Query: 273 FDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDI-NFHPVSIS---SGLGHSLAIC 328
              S+ +  NG +   G N  GQLG       + PV +   H V ++    G  H+LA+ 
Sbjct: 190 QTSSMAVLDNGEVYGWGYNGNGQLGLGNNGNQLTPVRVAALHSVCVNQIVCGYAHTLALT 249

Query: 329 EVRSSNVTGGARGIV-SWGWNRSSQLGRMGPDNV 361
           +           G++ +WG N   QLG    +N+
Sbjct: 250 D----------EGLLYAWGANTYGQLGTGNKNNL 273


>gi|126272576|ref|XP_001362510.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC4 isoform 2
           [Monodelphis domestica]
          Length = 1049

 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 64/245 (26%), Positives = 108/245 (44%), Gaps = 43/245 (17%)

Query: 55  EPTRVPGLPS-DVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRV 113
           +P +V  L + ++ +VS G  H+LA+ + G V+AWG + + QLG    E       P+ +
Sbjct: 74  KPEQVVALDAQNIVAVSCGEAHTLALNDKGQVYAWGLDTDGQLGLPGTEEYIKV--PRNI 131

Query: 114 EGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEK 173
           + L  + +         S A+     ++ WG++K GQLGLG ++     P  +++L G  
Sbjct: 132 KSLTDIQIVQIACGYYHSLALSKGSEVFSWGQNKHGQLGLGFELKSQSAPQLIKSLLGIP 191

Query: 174 IVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSS 233
            ++V+ G  H+   T  G +FGWG +   + G LG   E+     N+ +S  S +     
Sbjct: 192 FMQVAAGGAHSFVLTLSGAIFGWGRN---KFGQLGLNDENDRFVPNLLKSLRSQK----- 243

Query: 234 TIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVY 293
                                           +V I CG DH+  L + G + + G+  Y
Sbjct: 244 --------------------------------IVYICCGEDHTAALTKEGGVFTFGAGGY 271

Query: 294 GQLGR 298
           GQLG 
Sbjct: 272 GQLGH 276



 Score = 84.7 bits (208), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 59/191 (30%), Positives = 102/191 (53%), Gaps = 14/191 (7%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAY--EPTRVPGLPS-DVTSVSAGHYHSLAVTNNGAV 85
           V ++G  + G LGLP      G + Y   P  +  L    +  ++ G+YHSLA++    V
Sbjct: 105 VYAWGLDTDGQLGLP------GTEEYIKVPRNIKSLTDIQIVQIACGYYHSLALSKGSEV 158

Query: 86  WAWGRNNEVQLGRG-ALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWG 144
           ++WG+N   QLG G  L+S++    P+ ++ L  +      A G  S  +   G+++ WG
Sbjct: 159 FSWGQNKHGQLGLGFELKSQSA---PQLIKSLLGIPFMQVAAGGAHSFVLTLSGAIFGWG 215

Query: 145 KSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRI 204
           ++K GQLGL  D  +  VP+ +++L  +KIV +  G  H  A T++G +F +G    G++
Sbjct: 216 RNKFGQLGLN-DENDRFVPNLLKSLRSQKIVYICCGEDHTAALTKEGGVFTFGAGGYGQL 274

Query: 205 GNLGKALESSP 215
           G+   + E +P
Sbjct: 275 GHNSTSHEINP 285



 Score = 68.9 bits (167), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 71/274 (25%), Positives = 112/274 (40%), Gaps = 55/274 (20%)

Query: 85  VWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWG 144
           +  WG  +  QLG G ++      +P++ +      V         +  + DDG+++  G
Sbjct: 1   MLCWGNASFGQLGLGGIDEEIVL-EPRKSDFFINKKVQDVGCGLRHTVFVLDDGTVYTCG 59

Query: 145 KSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRI 204
            +  GQLG  K   +   P +V AL  + IV VS G  H LA  + G+++ WG   DG++
Sbjct: 60  CNDLGQLGHEKSRKK---PEQVVALDAQNIVAVSCGEAHTLALNDKGQVYAWGLDTDGQL 116

Query: 205 GNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGV 264
           G  G                                        E+Y+ +      +  +
Sbjct: 117 GLPGT---------------------------------------EEYIKVPRNIKSLTDI 137

Query: 265 EVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFHPVSISSGLGHS 324
           ++V IACG+ HSL L +   + S G N +GQLG     +G F +     P  I S LG  
Sbjct: 138 QIVQIACGYYHSLALSKGSEVFSWGQNKHGQLG-----LG-FELKSQSAPQLIKSLLG-- 189

Query: 325 LAICEVRS----SNVTGGARGIVSWGWNRSSQLG 354
           +   +V +    S V   +  I  WG N+  QLG
Sbjct: 190 IPFMQVAAGGAHSFVLTLSGAIFGWGRNKFGQLG 223


>gi|428174549|gb|EKX43444.1| hypothetical protein GUITHDRAFT_61168, partial [Guillardia theta
           CCMP2712]
          Length = 308

 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 61/209 (29%), Positives = 105/209 (50%), Gaps = 6/209 (2%)

Query: 36  SQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQ 95
           + GALG   S + +   A +   +  +PS +T+++ G +H+LAV  +G +W WGRN   Q
Sbjct: 25  ANGALGHGNSKSQLLPKALDRPLIYSMPS-ITTIACGEFHTLAVGQDGTLWTWGRNQYGQ 83

Query: 96  LGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGK 155
           LG G  +   T   P+RVE L++     A A G  S  + +   ++ +G +  GQLGL  
Sbjct: 84  LGHGDCK---THKLPRRVEALEKKICIKAAAGGQHSLVLTEANKVYAFGSNVFGQLGLES 140

Query: 156 DITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSP 215
            +  +  P  V  L    +  ++ G+ H++A  +  +L+ WG +  G++G LG    SSP
Sbjct: 141 KVKYSAAPDIVSRLRRSGVCHITCGYSHSMALLKSEQLYSWGRNDCGQLG-LGH-YRSSP 198

Query: 216 LDSNIDRSSESDQEISSSTIEKAQKLVSE 244
           +  ++    +S  +  S   +     VSE
Sbjct: 199 VPEHLTMFKKSQVQQISCGYDHNIAFVSE 227



 Score = 80.5 bits (197), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 82/312 (26%), Positives = 138/312 (44%), Gaps = 37/312 (11%)

Query: 70  SAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGV 129
           + G  H++A+T  G V++WG  N   LG G  +S+       R       ++        
Sbjct: 4   ACGKLHTVALTEEGRVYSWGCANGA-LGHGNSKSQLLPKALDRPLIYSMPSITTIACGEF 62

Query: 130 VSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTE 189
            + A+G DG+LW WG+++ GQLG G D     +P RVEAL  +  +K + G  H+L  TE
Sbjct: 63  HTLAVGQDGTLWTWGRNQYGQLGHG-DCKTHKLPRRVEALEKKICIKAAAGGQHSLVLTE 121

Query: 190 DGKLFGWGYSADGRIGNLGKALESSPLD--SNIDRSSESDQEI---SSSTIEKAQKLVS- 243
             K++ +G +  G++G   K   S+  D  S + RS           S  + K+++L S 
Sbjct: 122 ANKVYAFGSNVFGQLGLESKVKYSAAPDIVSRLRRSGVCHITCGYSHSMALLKSEQLYSW 181

Query: 244 -------EGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRN----GV-----LLS 287
                   G+   +  P+     + +  +V  I+CG+DH++         GV     + +
Sbjct: 182 GRNDCGQLGLGHYRSSPVPEHLTMFKKSQVQQISCGYDHNIAFVSEYAGPGVPPLEKVYT 241

Query: 288 CGSNVYGQLGREKQDMGMFPVDINFHPV----SISSGLGHSLAICEVRSSNVTGGARGIV 343
            G    GQLG ++      P  +         ++++G   S AI E         A+ + 
Sbjct: 242 WGRGEEGQLGHDELYSRCVPKVVQTLLARGIRAVAAGGFSSAAIDE---------AKQLY 292

Query: 344 SWGWNRSSQLGR 355
           +WG +R  QLG 
Sbjct: 293 TWGCSREGQLGH 304



 Score = 61.6 bits (148), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 57/215 (26%), Positives = 95/215 (44%), Gaps = 28/215 (13%)

Query: 12  VNVLTSRIFMRSASG----------TAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPG 61
           V  L  +I +++A+G            V +FG    G LGL + +      +  P  V  
Sbjct: 98  VEALEKKICIKAAAGGQHSLVLTEANKVYAFGSNVFGQLGLESKVK----YSAAPDIVSR 153

Query: 62  LP-SDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVN 120
           L  S V  ++ G+ HS+A+  +  +++WGRN+  QLG G   S      P+ +    +  
Sbjct: 154 LRRSGVCHITCGYSHSMALLKSEQLYSWGRNDCGQLGLGHYRSSPV---PEHLTMFKKSQ 210

Query: 121 V----CA-----AFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAG 171
           V    C      AF S      +     ++ WG+ + GQLG   ++    VP  V+ L  
Sbjct: 211 VQQISCGYDHNIAFVSEYAGPGVPPLEKVYTWGRGEEGQLG-HDELYSRCVPKVVQTLLA 269

Query: 172 EKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGN 206
             I  V+ G   + A  E  +L+ WG S +G++G+
Sbjct: 270 RGIRAVAAGGFSSAAIDEAKQLYTWGCSREGQLGH 304



 Score = 58.2 bits (139), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 39/103 (37%), Positives = 51/103 (49%), Gaps = 12/103 (11%)

Query: 64  SDVTSVSAGHYHSLAVTNNGA---------VWAWGRNNEVQLGRGALESRATWNDPKRVE 114
           S V  +S G+ H++A  +  A         V+ WGR  E QLG   L SR     PK V+
Sbjct: 209 SQVQQISCGYDHNIAFVSEYAGPGVPPLEKVYTWGRGEEGQLGHDELYSRCV---PKVVQ 265

Query: 115 GLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDI 157
            L    + A  A G  S+AI +   L+ WG S+ GQLG G DI
Sbjct: 266 TLLARGIRAVAAGGFSSAAIDEAKQLYTWGCSREGQLGHGDDI 308


>gi|328712024|ref|XP_001948029.2| PREDICTED: hypothetical protein LOC100158844 [Acyrthosiphon pisum]
          Length = 1626

 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 100/342 (29%), Positives = 152/342 (44%), Gaps = 31/342 (9%)

Query: 29   VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSD-VTSVSAGHYHSLAVTNNGAVWA 87
            V S+G    G LG     TG  G A  P  V  L ++ + SVSAG YHSLA++ +G +W 
Sbjct: 869  VYSWGSNHYGQLG-----TGRRGQAPYPMLVDSLSNELIVSVSAGQYHSLAISASGQLWT 923

Query: 88   WGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSK 147
            WG     QLG GA++       PK ++ L+  N+ +A+     S  +  +G ++ +G   
Sbjct: 924  WGWGVYGQLGHGAIDD---CEKPKLLKSLENENIISAYGGYSHSIILTSNGKVFTFGSGS 980

Query: 148  RGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADG-RIGN 206
             GQLG G   T+   P  V  L  E I  +   + H LA ++ G+L+ WG S    R   
Sbjct: 981  FGQLGNGS-TTKITSPVPVYGLP-EPIKCIYTAYFHNLALSDVGRLYTWGSSPQVLRFHA 1038

Query: 207  LGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEV 266
              +    + L  N +     D EI + T +     +S         P + +   + G ++
Sbjct: 1039 QSQKRARNQLVLN-EGDQADDAEIDALTADDGLLHLS---------PTLVDTSHISG-DI 1087

Query: 267  VDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFHPVSI---SSGLGH 323
              + CG  HS V+   G L + G N+ GQLG       + P      P S+   SS    
Sbjct: 1088 FQMCCGCHHSAVISTTGQLYTWGLNLDGQLGVSGIRERLVPTVTLVGPPSVIVDSSSTSG 1147

Query: 324  SLAICEVRS----SNVTGGARGIVSWGWNRSSQLGRMGPDNV 361
            SL I EVR     +     A  +  WG N   QLG++  +++
Sbjct: 1148 SL-IKEVRCGADFTLALDAANKLWGWGSNHEGQLGKIPEEDL 1188



 Score = 65.5 bits (158), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 59/199 (29%), Positives = 89/199 (44%), Gaps = 54/199 (27%)

Query: 180 GWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQ 239
           GW HA A   + KL+ WG+S+ G +G +G  +  +   +                     
Sbjct: 803 GWAHA-AHIRNHKLYTWGHSSYGCLG-VGPHMTKTATPN--------------------- 839

Query: 240 KLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGRE 299
                        P+ W  F+   VEV+ +ACG +HS+ L  NGV  S GSN YGQLG  
Sbjct: 840 -------------PVSW--FVYIRVEVIQVACGRNHSIALTTNGV-YSWGSNHYGQLGTG 883

Query: 300 KQDMGMFPVDI----NFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGR 355
           ++    +P+ +    N   VS+S+G  HSLAI           +  + +WGW    QLG 
Sbjct: 884 RRGQAPYPMLVDSLSNELIVSVSAGQYHSLAI---------SASGQLWTWGWGVYGQLGH 934

Query: 356 MGPDNV--PLVVEGLEGES 372
              D+   P +++ LE E+
Sbjct: 935 GAIDDCEKPKLLKSLENEN 953



 Score = 48.9 bits (115), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 53/217 (24%), Positives = 93/217 (42%), Gaps = 30/217 (13%)

Query: 137  DGSLWVWGKSKRGQLGLGKDITEAIVPSRVE--ALAGEKIVKVSFGWGHALAQTEDGKLF 194
            +  L+ WG S  G LG+G  +T+   P+ V        ++++V+ G  H++A T +G ++
Sbjct: 812  NHKLYTWGHSSYGCLGVGPHMTKTATPNPVSWFVYIRVEVIQVACGRNHSIALTTNG-VY 870

Query: 195  GWGYSADGRIGNLGKALESSPL----DSNIDRSSESDQEISSSTIEKAQKL--------- 241
             WG +  G++G   +     P+     SN    S S  +  S  I  + +L         
Sbjct: 871  SWGSNHYGQLGTGRRGQAPYPMLVDSLSNELIVSVSAGQYHSLAISASGQLWTWGWGVYG 930

Query: 242  -----VSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQL 296
                   +  EK K +  +      E   ++    G+ HS++L  NG + + GS  +GQL
Sbjct: 931  QLGHGAIDDCEKPKLLKSL------ENENIISAYGGYSHSIILTSNGKVFTFGSGSFGQL 984

Query: 297  GREKQDMGMFPVDINFHP---VSISSGLGHSLAICEV 330
            G         PV +   P     I +   H+LA+ +V
Sbjct: 985  GNGSTTKITSPVPVYGLPEPIKCIYTAYFHNLALSDV 1021


>gi|297797029|ref|XP_002866399.1| regulator of chromosome condensation family protein [Arabidopsis
           lyrata subsp. lyrata]
 gi|297312234|gb|EFH42658.1| regulator of chromosome condensation family protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 445

 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 58/180 (32%), Positives = 95/180 (52%), Gaps = 5/180 (2%)

Query: 50  GGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWND 109
           GG    P++V  L   V SVS G + ++A+T  G +W WG N+  +LGRG  ++   W +
Sbjct: 248 GGGLSVPSKVKALTVPVASVSCGGFFTMALTKEGQLWNWGANSNYELGRG--DNLGGW-E 304

Query: 110 PKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEAL 169
           P  V  LD V +      G  S A+  +G +  WG    GQLG    +    +P+ +EAL
Sbjct: 305 PLPVPSLDSVRITQIACGGYHSLALTKEGKVLSWGHGGHGQLG-NSSLRNQKIPTEIEAL 363

Query: 170 AGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLG-KALESSPLDSNIDRSSESDQ 228
           A +KIV ++ G   + A T+ G+L+ WG + D ++G  G   ++++P++ N     +  Q
Sbjct: 364 ADKKIVFIACGGSSSAAITDGGELWMWGNAKDFQLGVPGLPEIQTTPVEVNFLTEEDERQ 423



 Score = 65.5 bits (158), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 68/259 (26%), Positives = 104/259 (40%), Gaps = 66/259 (25%)

Query: 66  VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWND--PKRVEGLDQVNVCA 123
           +  ++ G  HS+A+T+ G V+ WG       G GAL  +    +  P+ V+G     + A
Sbjct: 154 IRCIALGGLHSVALTHQGDVFTWGYG-----GFGALGHKVYTRELVPRCVDGSWDCKISA 208

Query: 124 AFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEA------IVPSRVEALAGEKIVKV 177
              SG  ++AI + G L++WG+ +                    VPS+V+AL    +  V
Sbjct: 209 IATSGTHTAAITESGELYMWGREEGDGRLGLGPGRGPNEGGGLSVPSKVKALT-VPVASV 267

Query: 178 SFGWGHALAQTEDGKLFGWGYSAD---GRIGNLGKALESSPLDSNIDRSSESDQEISSST 234
           S G    +A T++G+L+ WG +++   GR  NLG                          
Sbjct: 268 SCGGFFTMALTKEGQLWNWGANSNYELGRGDNLGG------------------------- 302

Query: 235 IEKAQKLVSEGMEKEKYMPIIWEPFLV---EGVEVVDIACGFDHSLVLGRNGVLLSCGSN 291
                                WEP  V   + V +  IACG  HSL L + G +LS G  
Sbjct: 303 ---------------------WEPLPVPSLDSVRITQIACGGYHSLALTKEGKVLSWGHG 341

Query: 292 VYGQLGREKQDMGMFPVDI 310
            +GQLG         P +I
Sbjct: 342 GHGQLGNSSLRNQKIPTEI 360



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 79/325 (24%), Positives = 132/325 (40%), Gaps = 52/325 (16%)

Query: 85  VWAWGRNNEVQLGRGALESR-----------------ATWNDPKRVEGLDQVNVCAAFAS 127
           +++WGR    QLG G  E R                 +    P R++  +  +     + 
Sbjct: 50  LFSWGRGASGQLGGGIEEIRMYPSPVANLLLRSDQSFSLAQTPGRIDA-ESSSFPIGISC 108

Query: 128 GVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQ 187
           G+  S +  DG LW+WGK   G+LG G++     VP+         I  ++ G  H++A 
Sbjct: 109 GLFHSGLTIDGDLWIWGKGDGGRLGFGQE-NSVFVPNLNPLFEEHSIRCIALGGLHSVAL 167

Query: 188 TEDGKLFGWGYSADGRIGNLGKALESSP--LDSNIDR--SSESDQEISSSTIEKAQKLVS 243
           T  G +F WGY   G +G+     E  P  +D + D   S+ +     ++ I ++ +L  
Sbjct: 168 THQGDVFTWGYGGFGALGHKVYTRELVPRCVDGSWDCKISAIATSGTHTAAITESGELYM 227

Query: 244 EGMEKEKYMPI------------IWEPFLVEG--VEVVDIACGFDHSLVLGRNGVLLSCG 289
            G E+                  +  P  V+   V V  ++CG   ++ L + G L + G
Sbjct: 228 WGREEGDGRLGLGPGRGPNEGGGLSVPSKVKALTVPVASVSCGGFFTMALTKEGQLWNWG 287

Query: 290 SNVYGQLGREKQDMGMFPVDI----NFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSW 345
           +N   +LGR     G  P+ +    +     I+ G  HSLA+ +            ++SW
Sbjct: 288 ANSNYELGRGDNLGGWEPLPVPSLDSVRITQIACGGYHSLALTKEGK---------VLSW 338

Query: 346 GWNRSSQLGRMGPDN--VPLVVEGL 368
           G     QLG     N  +P  +E L
Sbjct: 339 GHGGHGQLGNSSLRNQKIPTEIEAL 363


>gi|395855000|ref|XP_003799962.1| PREDICTED: X-linked retinitis pigmentosa GTPase regulator [Otolemur
           garnettii]
          Length = 816

 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 96/335 (28%), Positives = 147/335 (43%), Gaps = 77/335 (22%)

Query: 32  FGDGSQGALGLPTSLTGVGGDAYEPTRVPGL-PSDVTSVSAGHYHSLAVTNNGAVWAWGR 90
           FG  + G LGL     G      +PT +  L P  V   + G  H++  T  G V+A G 
Sbjct: 59  FGSNNWGQLGL-----GSKAAVNKPTCIKALKPEKVKFAACGRTHTIISTEGGNVYATGG 113

Query: 91  NNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQ 150
           NNE QLG G  + R T++         ++   +A ++   S+A+ +DG L++WG +  GQ
Sbjct: 114 NNEGQLGLGDTDERDTFHLISFFTSQHKIKQLSAGSN--TSAALTEDGQLFMWGDNSEGQ 171

Query: 151 LGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKA 210
           +GL KD+T   VP +V    G+ I  +S G+ H+   T DG+L+ +G S  G++G   + 
Sbjct: 172 IGL-KDVTNVCVPHQV--TIGKPISWISCGYYHSAFVTIDGELYTFGESESGKLGLPSQL 228

Query: 211 LESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIA 270
           L                      T  +  +LVS   +K                 V+ +A
Sbjct: 229 L----------------------TNHRIPQLVSSIPDK-----------------VIQVA 249

Query: 271 CGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFHP-----------VSISS 319
           CG  H+LVL    V  + G   +GQLG     +G F  + +  P           +SIS 
Sbjct: 250 CGGGHTLVLTEESV-YAFGLGQFGQLG-----LGTFIFETS-EPKVLEYVKGEKIISISC 302

Query: 320 GLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLG 354
           G  H+  I +      TG   GI ++G  R  +LG
Sbjct: 303 GENHTAMITD------TG---GIYTFGDGRHGKLG 328



 Score = 68.9 bits (167), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 83/313 (26%), Positives = 131/313 (41%), Gaps = 67/313 (21%)

Query: 69  VSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASG 128
           +S G  HS  VT N  ++ +G NN  QLG G   S+A  N P  ++ L    V  A A G
Sbjct: 40  LSCGDEHSAIVTGNNKLYMFGSNNWGQLGLG---SKAAVNKPTCIKALKPEKVKFA-ACG 95

Query: 129 VVSSAIGDD-GSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGE-KIVKVSFGWGHALA 186
              + I  + G+++  G +  GQLGLG D  E      +     + KI ++S G   + A
Sbjct: 96  RTHTIISTEGGNVYATGGNNEGQLGLG-DTDERDTFHLISFFTSQHKIKQLSAGSNTSAA 154

Query: 187 QTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGM 246
            TEDG+LF WG +++G+IG         P    I +                        
Sbjct: 155 LTEDGQLFMWGDNSEGQIGLKDVTNVCVPHQVTIGK------------------------ 190

Query: 247 EKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMG-- 304
                 PI W            I+CG+ HS  +  +G L + G +  G+LG   Q +   
Sbjct: 191 ------PISW------------ISCGYYHSAFVTIDGELYTFGESESGKLGLPSQLLTNH 232

Query: 305 MFPVDINFHP---VSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGR---MGP 358
             P  ++  P   + ++ G GH+L + E            + ++G  +  QLG    +  
Sbjct: 233 RIPQLVSSIPDKVIQVACGGGHTLVLTE----------ESVYAFGLGQFGQLGLGTFIFE 282

Query: 359 DNVPLVVEGLEGE 371
            + P V+E ++GE
Sbjct: 283 TSEPKVLEYVKGE 295



 Score = 67.8 bits (164), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 60/184 (32%), Positives = 94/184 (51%), Gaps = 18/184 (9%)

Query: 33  GDGSQGALGLPTSLTGVGGDAYEPTRVP-GLPSDVTSVSAGHYHSLAVTNNGAVWAWGRN 91
           GD S+G +GL   +T V      P +V  G P  ++ +S G+YHS  VT +G ++ +G +
Sbjct: 165 GDNSEGQIGL-KDVTNVCV----PHQVTIGKP--ISWISCGYYHSAFVTIDGELYTFGES 217

Query: 92  NEVQLGRGALESRATWND--PKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRG 149
              +LG   L S+   N   P+ V  +    +  A   G   + +  + S++ +G  + G
Sbjct: 218 ESGKLG---LPSQLLTNHRIPQLVSSIPDKVIQVACGGG--HTLVLTEESVYAFGLGQFG 272

Query: 150 QLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGK 209
           QLGLG  I E   P  +E + GEKI+ +S G  H    T+ G ++ +G   DGR G LG 
Sbjct: 273 QLGLGTFIFETSEPKVLEYVKGEKIISISCGENHTAMITDTGGIYTFG---DGRHGKLGL 329

Query: 210 ALES 213
            LE+
Sbjct: 330 GLEN 333



 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 42/158 (26%), Positives = 72/158 (45%), Gaps = 7/158 (4%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAW 88
           + +FG+   G LGLP+ L     +   P  V  +P  V  V+ G  H+L +T   +V+A+
Sbjct: 211 LYTFGESESGKLGLPSQLL---TNHRIPQLVSSIPDKVIQVACGGGHTLVLTEE-SVYAF 266

Query: 89  GRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKR 148
           G     QLG G      +  +PK +E +    + +       ++ I D G ++ +G  + 
Sbjct: 267 GLGQFGQLGLGTFIFETS--EPKVLEYVKGEKIISISCGENHTAMITDTGGIYTFGDGRH 324

Query: 149 GQLGLG-KDITEAIVPSRVEALAGEKIVKVSFGWGHAL 185
           G+LGLG ++ T    P+         +  V+ G  H L
Sbjct: 325 GKLGLGLENFTNRFFPTPCSVFLKFMVQLVACGGCHML 362


>gi|301791658|ref|XP_002930797.1| PREDICTED: RCC1 and BTB domain-containing protein 1-like, partial
           [Ailuropoda melanoleuca]
          Length = 348

 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 54/162 (33%), Positives = 88/162 (54%), Gaps = 5/162 (3%)

Query: 62  LPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNV 121
           L   V  V+ G +HS+A+  +G V+AWG NN  Q+G G+  ++ T   P++V     +  
Sbjct: 126 LIKQVVEVACGSHHSMALAADGEVFAWGYNNCGQVGSGSTTNQPT---PRKVTNCLHIKR 182

Query: 122 CAAFASGVVSS-AIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFG 180
               A G  SS A+ D+G ++ WG +  GQLGLG +  + + P RV AL    + ++  G
Sbjct: 183 VVGIACGQTSSMAVLDNGEVYGWGYNGNGQLGLGNNGNQ-LTPVRVAALHSVCVNQIVCG 241

Query: 181 WGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDR 222
           + H LA T++G L+ WG +  G++G   K    SP    +++
Sbjct: 242 YAHTLALTDEGLLYAWGANTYGQLGTGNKNNLLSPAHIMVEK 283



 Score = 75.9 bits (185), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 59/245 (24%), Positives = 97/245 (39%), Gaps = 60/245 (24%)

Query: 75  HSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVV---- 130
           H L  T +G V+AWG N   QLG G              +G+  + VC       V    
Sbjct: 86  HVLLSTEDGVVYAWGHNGYSQLGNGTTN-----------QGIAPIQVCTNLLIKQVVEVA 134

Query: 131 -----SSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHAL 185
                S A+  DG ++ WG +  GQ+G G    +         L  +++V ++ G   ++
Sbjct: 135 CGSHHSMALAADGEVFAWGYNNCGQVGSGSTTNQPTPRKVTNCLHIKRVVGIACGQTSSM 194

Query: 186 AQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEG 245
           A  ++G+++GWGY+ +G++G                                       G
Sbjct: 195 AVLDNGEVYGWGYNGNGQLG--------------------------------------LG 216

Query: 246 MEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGM 305
               +  P+      +  V V  I CG+ H+L L   G+L + G+N YGQLG   ++  +
Sbjct: 217 NNGNQLTPV--RVAALHSVCVNQIVCGYAHTLALTDEGLLYAWGANTYGQLGTGNKNNLL 274

Query: 306 FPVDI 310
            P  I
Sbjct: 275 SPAHI 279



 Score = 65.5 bits (158), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 65/250 (26%), Positives = 110/250 (44%), Gaps = 35/250 (14%)

Query: 134 IGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWG-HALAQTEDGK 192
           + D+  ++V+G +    LG G D    +VP ++EAL G+KI  +S+G G H L  TEDG 
Sbjct: 37  VTDNDEVFVFGLNYSNCLGTG-DNQSTLVPKKLEALCGKKIKSLSYGSGPHVLLSTEDGV 95

Query: 193 LFGWGYSADGRIGN----------------LGKALESSPLDSNIDRSSESDQEISSSTIE 236
           ++ WG++   ++GN                L K +      S+   +  +D E+ +    
Sbjct: 96  VYAWGHNGYSQLGNGTTNQGIAPIQVCTNLLIKQVVEVACGSHHSMALAADGEVFAWGYN 155

Query: 237 KAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQL 296
              ++ S     +     +     ++   VV IACG   S+ +  NG +   G N  GQL
Sbjct: 156 NCGQVGSGSTTNQPTPRKVTNCLHIK--RVVGIACGQTSSMAVLDNGEVYGWGYNGNGQL 213

Query: 297 GREKQDMGMFPVDI-NFHPVSIS---SGLGHSLAICEVRSSNVTGGARGIV-SWGWNRSS 351
           G       + PV +   H V ++    G  H+LA+ +           G++ +WG N   
Sbjct: 214 GLGNNGNQLTPVRVAALHSVCVNQIVCGYAHTLALTD----------EGLLYAWGANTYG 263

Query: 352 QLGRMGPDNV 361
           QLG    +N+
Sbjct: 264 QLGTGNKNNL 273


>gi|126272574|ref|XP_001362426.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC4 isoform 1
           [Monodelphis domestica]
          Length = 1057

 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 64/245 (26%), Positives = 108/245 (44%), Gaps = 43/245 (17%)

Query: 55  EPTRVPGLPS-DVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRV 113
           +P +V  L + ++ +VS G  H+LA+ + G V+AWG + + QLG    E       P+ +
Sbjct: 74  KPEQVVALDAQNIVAVSCGEAHTLALNDKGQVYAWGLDTDGQLGLPGTEEYIKV--PRNI 131

Query: 114 EGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEK 173
           + L  + +         S A+     ++ WG++K GQLGLG ++     P  +++L G  
Sbjct: 132 KSLTDIQIVQIACGYYHSLALSKGSEVFSWGQNKHGQLGLGFELKSQSAPQLIKSLLGIP 191

Query: 174 IVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSS 233
            ++V+ G  H+   T  G +FGWG +   + G LG   E+     N+ +S  S +     
Sbjct: 192 FMQVAAGGAHSFVLTLSGAIFGWGRN---KFGQLGLNDENDRFVPNLLKSLRSQK----- 243

Query: 234 TIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVY 293
                                           +V I CG DH+  L + G + + G+  Y
Sbjct: 244 --------------------------------IVYICCGEDHTAALTKEGGVFTFGAGGY 271

Query: 294 GQLGR 298
           GQLG 
Sbjct: 272 GQLGH 276



 Score = 84.7 bits (208), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 59/191 (30%), Positives = 102/191 (53%), Gaps = 14/191 (7%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAY--EPTRVPGLPS-DVTSVSAGHYHSLAVTNNGAV 85
           V ++G  + G LGLP      G + Y   P  +  L    +  ++ G+YHSLA++    V
Sbjct: 105 VYAWGLDTDGQLGLP------GTEEYIKVPRNIKSLTDIQIVQIACGYYHSLALSKGSEV 158

Query: 86  WAWGRNNEVQLGRG-ALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWG 144
           ++WG+N   QLG G  L+S++    P+ ++ L  +      A G  S  +   G+++ WG
Sbjct: 159 FSWGQNKHGQLGLGFELKSQSA---PQLIKSLLGIPFMQVAAGGAHSFVLTLSGAIFGWG 215

Query: 145 KSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRI 204
           ++K GQLGL  D  +  VP+ +++L  +KIV +  G  H  A T++G +F +G    G++
Sbjct: 216 RNKFGQLGLN-DENDRFVPNLLKSLRSQKIVYICCGEDHTAALTKEGGVFTFGAGGYGQL 274

Query: 205 GNLGKALESSP 215
           G+   + E +P
Sbjct: 275 GHNSTSHEINP 285



 Score = 68.9 bits (167), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 71/274 (25%), Positives = 112/274 (40%), Gaps = 55/274 (20%)

Query: 85  VWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWG 144
           +  WG  +  QLG G ++      +P++ +      V         +  + DDG+++  G
Sbjct: 1   MLCWGNASFGQLGLGGIDEEIVL-EPRKSDFFINKKVQDVGCGLRHTVFVLDDGTVYTCG 59

Query: 145 KSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRI 204
            +  GQLG  K   +   P +V AL  + IV VS G  H LA  + G+++ WG   DG++
Sbjct: 60  CNDLGQLGHEKSRKK---PEQVVALDAQNIVAVSCGEAHTLALNDKGQVYAWGLDTDGQL 116

Query: 205 GNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGV 264
           G  G                                        E+Y+ +      +  +
Sbjct: 117 GLPGT---------------------------------------EEYIKVPRNIKSLTDI 137

Query: 265 EVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFHPVSISSGLGHS 324
           ++V IACG+ HSL L +   + S G N +GQLG     +G F +     P  I S LG  
Sbjct: 138 QIVQIACGYYHSLALSKGSEVFSWGQNKHGQLG-----LG-FELKSQSAPQLIKSLLG-- 189

Query: 325 LAICEVRS----SNVTGGARGIVSWGWNRSSQLG 354
           +   +V +    S V   +  I  WG N+  QLG
Sbjct: 190 IPFMQVAAGGAHSFVLTLSGAIFGWGRNKFGQLG 223


>gi|55249804|gb|AAH85921.1| Herc6 protein, partial [Rattus norvegicus]
          Length = 1034

 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 85/309 (27%), Positives = 137/309 (44%), Gaps = 56/309 (18%)

Query: 70  SAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGV 129
           ++G  HSL + +N  V++ G N+  QLG+ + +S      P+ ++ L  V++        
Sbjct: 34  ASGERHSLLLFSNHRVYSCGDNSRGQLGQKSPQSTKR---PEPIQALSTVHIDLVSCGKE 90

Query: 130 VSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTE 189
            S A+   G ++ WG    GQLG+G+    + +P+++ +LAG KI++VS G  H+LA +E
Sbjct: 91  HSVAVCHQGRVFTWGAGSEGQLGIGESKEISFMPTKINSLAGIKIIQVSCGHYHSLALSE 150

Query: 190 DGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKE 249
           DG++F WG +  G++G LG  L           S  S Q++ S                 
Sbjct: 151 DGQVFSWGSNRQGQLG-LGNNL----------CSQASPQKVKS----------------- 182

Query: 250 KYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQL---GREKQDMGMF 306
                      +EG+ +  +A G  HS  L   G     G+N  GQL   G   ++    
Sbjct: 183 -----------LEGIPLAQVAAGGTHSFALSLMGTSFGWGNNRSGQLALSGNSAKEQIYK 231

Query: 307 PVDI----NFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPDNVP 362
           P  I      + V IS G  H+  + E       GG+    S     S + GR GP    
Sbjct: 232 PHSIGALKTLNVVYISCGYEHTSVLTEDGQVFTFGGSS---SEQLQHSPRSGRGGPQ--- 285

Query: 363 LVVEGLEGE 371
            ++EG+ G 
Sbjct: 286 -LIEGIGGH 293


>gi|301618542|ref|XP_002938670.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC6-like [Xenopus
           (Silurana) tropicalis]
          Length = 1029

 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 73/260 (28%), Positives = 122/260 (46%), Gaps = 20/260 (7%)

Query: 66  VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAF 125
           V  VS G  H+L +  +G + + G+N   QLGR +  S       +++  L+   +    
Sbjct: 36  VQKVSCGEKHTLYLLEDGTLLSCGQNPYGQLGRKSNNSSI-----EQISSLEAQTIVDIS 90

Query: 126 ASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHAL 185
                S A+ D+GS++ WG    GQLG G   +    P ++  L   KI+++S G  H+L
Sbjct: 91  CGTNHSVAVSDEGSIYSWGDGSEGQLGTGNLSSRNFTPKKITGLFNTKIIQISCGNFHSL 150

Query: 186 AQTEDGKLFGWGYSADGRIG-----------NLGKALESSPLDSNIDRSSESDQEISSST 234
           A +EDG++F WG +  G++G            L K+L+  PL       S+S     S T
Sbjct: 151 ALSEDGRVFSWGQNKCGQLGLGSQIINQATPQLVKSLKGIPLVQVTAGGSQSFALSMSGT 210

Query: 235 IEKAQKLVSEGM-EKEKYMPIIWEPFLVEGVE---VVDIACGFDHSLVLGRNGVLLSCGS 290
           +    K  +  +  K   M   ++P  V  +    V  I+CG +H+ VL ++G + + G 
Sbjct: 211 VFAWGKNNAGQLGFKSDPMKGTFKPHAVNSLRNLGVAYISCGEEHTAVLSKDGSVYTFGD 270

Query: 291 NVYGQLGREKQDMGMFPVDI 310
           + +GQLG+   +    P  I
Sbjct: 271 DTHGQLGQNSGNQTSVPQKI 290



 Score = 87.0 bits (214), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 57/182 (31%), Positives = 100/182 (54%), Gaps = 12/182 (6%)

Query: 28  AVVSFGDGSQGALGLPTSLTG-VGGDAYEPTRVPGL-PSDVTSVSAGHYHSLAVTNNGAV 85
           ++ S+GDGS+G LG     TG +    + P ++ GL  + +  +S G++HSLA++ +G V
Sbjct: 104 SIYSWGDGSEGQLG-----TGNLSSRNFTPKKITGLFNTKIIQISCGNFHSLALSEDGRV 158

Query: 86  WAWGRNNEVQLGRGA-LESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWG 144
           ++WG+N   QLG G+ + ++AT   P+ V+ L  + +    A G  S A+   G+++ WG
Sbjct: 159 FSWGQNKCGQLGLGSQIINQAT---PQLVKSLKGIPLVQVTAGGSQSFALSMSGTVFAWG 215

Query: 145 KSKRGQLGLGKDITE-AIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGR 203
           K+  GQLG   D  +    P  V +L    +  +S G  H    ++DG ++ +G    G+
Sbjct: 216 KNNAGQLGFKSDPMKGTFKPHAVNSLRNLGVAYISCGEEHTAVLSKDGSVYTFGDDTHGQ 275

Query: 204 IG 205
           +G
Sbjct: 276 LG 277



 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 66/244 (27%), Positives = 98/244 (40%), Gaps = 68/244 (27%)

Query: 140 LWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIV-KVSFGWGHALAQTEDGKLFGWGY 198
           ++ WG +  GQL L +   E +     +    ++ V KVS G  H L   EDG L   G 
Sbjct: 1   MYCWGDNCFGQLALLQGEKEVVHFKENDYFQSQECVQKVSCGEKHTLYLLEDGTLLSCGQ 60

Query: 199 SADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEP 258
           +  G++G                R S      ++S+IE+   L                 
Sbjct: 61  NPYGQLG----------------RKS------NNSSIEQISSL----------------- 81

Query: 259 FLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLG---------REKQDMGMFPVD 309
              E   +VDI+CG +HS+ +   G + S G    GQLG           K+  G+F   
Sbjct: 82  ---EAQTIVDISCGTNHSVAVSDEGSIYSWGDGSEGQLGTGNLSSRNFTPKKITGLFNTK 138

Query: 310 INFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLG---RMGPDNVPLVVE 366
           I    + IS G  HSLA+ E          R + SWG N+  QLG   ++     P +V+
Sbjct: 139 I----IQISCGNFHSLALSE--------DGR-VFSWGQNKCGQLGLGSQIINQATPQLVK 185

Query: 367 GLEG 370
            L+G
Sbjct: 186 SLKG 189


>gi|429850121|gb|ELA25421.1| ran exchange factor prp20 pim1 [Colletotrichum gloeosporioides Nara
           gc5]
          Length = 430

 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 72/265 (27%), Positives = 120/265 (45%), Gaps = 37/265 (13%)

Query: 56  PTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWN-DPKRVE 114
           P  +PGL +D+  ++ G  H LA+TN+G V+AWG   + +LGR  L  R      P+RV 
Sbjct: 196 PVLIPGL-TDIKELAGGSDHILALTNDGNVFAWGSGEQNELGRRILARRRFETLVPQRV- 253

Query: 115 GLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKD----ITEAIVPSRVEALA 170
           GL +      FA    S AI   G +W +G +  GQ G+        T  I P+ +++L 
Sbjct: 254 GLPKNKTAKIFAGSHHSFAIDTTGKVWAFGLNNFGQCGISTREDTGFTTVISPTVIKSLE 313

Query: 171 GEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEI 230
           G K+  +  G  H +A TE+G++  WG + DG+   +G  LE+ P D             
Sbjct: 314 GYKVRHIGCGLHHTVACTEEGEVLVWGRADDGQ---MGMPLETLPED------------- 357

Query: 231 SSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGS 290
                     ++ +  ++ + + +   P +V  ++ V +A G D+   + + G + + G 
Sbjct: 358 ---------HIIFDSRDRPRVLNV---PAVVPDLKAVFVAAGIDNCYTISKEGEMHAWGF 405

Query: 291 NVYGQLGREKQDMGMFP--VDINFH 313
           +     G    D    P  V   FH
Sbjct: 406 SASYNTGLATTDTVKTPTLVRTQFH 430



 Score = 46.2 bits (108), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 58/262 (22%), Positives = 101/262 (38%), Gaps = 41/262 (15%)

Query: 75  HSLAVTNNGAVWAWGRNNEVQLGRGALESRATW--------------NDPKRVEGLDQVN 120
           H +A+T++G V  WG N++  LGR    S++                + P+ V   ++++
Sbjct: 89  HCVALTHDGKVLTWGVNDDGALGRVKSTSKSEAEAEEDEEDILNPFESTPEAVNFEEEID 148

Query: 121 VCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLG-----KDITEAIVPSRVEALAGEKIV 175
           V    A+     A+   G ++ WG    G    G        T   +P  +  L    I 
Sbjct: 149 VVQVAATNSAGFALTAAGKVYGWGSFAGGDGNFGFLREKPPKTTERLPVLIPGLT--DIK 206

Query: 176 KVSFGWGHALAQTEDGKLFGWGYSADGRIGN--LGKALESSPLDSNIDRSSESDQEI--- 230
           +++ G  H LA T DG +F WG      +G   L +    + +   +        +I   
Sbjct: 207 ELAGGSDHILALTNDGNVFAWGSGEQNELGRRILARRRFETLVPQRVGLPKNKTAKIFAG 266

Query: 231 --SSSTIEKAQKLVSEGM-----------EKEKYMPIIWEPFL--VEGVEVVDIACGFDH 275
              S  I+   K+ + G+           E   +  +I    +  +EG +V  I CG  H
Sbjct: 267 SHHSFAIDTTGKVWAFGLNNFGQCGISTREDTGFTTVISPTVIKSLEGYKVRHIGCGLHH 326

Query: 276 SLVLGRNGVLLSCGSNVYGQLG 297
           ++     G +L  G    GQ+G
Sbjct: 327 TVACTEEGEVLVWGRADDGQMG 348



 Score = 39.3 bits (90), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 68/281 (24%), Positives = 114/281 (40%), Gaps = 60/281 (21%)

Query: 140 LWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWG--HALAQTEDGKLFGWG 197
           ++V G  +  +LGLG   T+A  P     L  + +  V    G  H +A T DGK+  WG
Sbjct: 44  VFVIGSGENSELGLGPRHTQAPRPRLNRLLDADSVGVVQVAVGGMHCVALTHDGKVLTWG 103

Query: 198 YSADGRIGNLG-----------------KALESSPLDSNIDRSSESDQEISSST----IE 236
            + DG +G +                     ES+P   N +   +  Q  ++++    + 
Sbjct: 104 VNDDGALGRVKSTSKSEAEAEEDEEDILNPFESTPEAVNFEEEIDVVQVAATNSAGFALT 163

Query: 237 KAQKLV----------SEGMEKEKYMPIIWE--PFLVEGV-EVVDIACGFDHSLVLGRNG 283
            A K+           + G  +EK  P   E  P L+ G+ ++ ++A G DH L L  +G
Sbjct: 164 AAGKVYGWGSFAGGDGNFGFLREK-PPKTTERLPVLIPGLTDIKELAGGSDHILALTNDG 222

Query: 284 VLLSCGSNVYGQLGR----EKQDMGMFPVDINF---HPVSISSGLGHSLAICEVRSSNVT 336
            + + GS    +LGR     ++   + P  +         I +G  HS AI      + T
Sbjct: 223 NVFAWGSGEQNELGRRILARRRFETLVPQRVGLPKNKTAKIFAGSHHSFAI------DTT 276

Query: 337 GGARGIVSWGWNRSSQLGRMGPDNV-------PLVVEGLEG 370
           G    + ++G N   Q G    ++        P V++ LEG
Sbjct: 277 G---KVWAFGLNNFGQCGISTREDTGFTTVISPTVIKSLEG 314


>gi|320168750|gb|EFW45649.1| conserved hypothetical protein [Capsaspora owczarzaki ATCC 30864]
          Length = 567

 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 71/284 (25%), Positives = 136/284 (47%), Gaps = 37/284 (13%)

Query: 56  PTRVPGLPS-DVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVE 114
           P  +P L +  VT V+AG +HS+A+++NG V+ WG N +   G G  +  +    P+RV+
Sbjct: 147 PRPIPNLSAVKVTQVAAGAHHSVALSDNGRVYTWGSNKQGACGIG--KPGSIQRAPQRVK 204

Query: 115 GLDQVNVCAAFASGVVSSAIGDDG-SLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEK 173
              +  + A  A G   + +  +G  L+ +G ++ GQ G        +   R+ +    +
Sbjct: 205 DKLENELIAEIACGFAHTCVRTNGGDLYCFGFNRHGQCGADPSNLPIVPQPRLVSQLRRR 264

Query: 174 IVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSS 233
           +  ++ G  H+LA   DG ++ WG +  GR+G+          ++  +R  ++ +E++++
Sbjct: 265 VASIACGRHHSLAILNDGNVYSWGGAEGGRLGS----------EAVHERHQQTQRELAAN 314

Query: 234 TIEKAQKLVSEGMEKEKYMPI-IWEPFLV------------EGVEVVDIACGFDHSLVLG 280
            +++        +  E Y+P+    P ++            +G  VV  A G+ HSL L 
Sbjct: 315 PLKE--------LATENYVPLSSCLPAVIKSLAPNSELIGGKGARVVRAAGGWYHSLFLT 366

Query: 281 RNGVLLSCGSNVYGQLG-REKQDMGMFPVDINFHPVSISSGLGH 323
             G++L  G    GQLG R  ++   +P  +    V+ ++ LGH
Sbjct: 367 NAGMVLGTGDTSAGQLGIRPLREEHYYPTPVRLFQVAAAT-LGH 409



 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 42/171 (24%), Positives = 74/171 (43%), Gaps = 43/171 (25%)

Query: 162 VPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNID 221
           +P  +  L+  K+ +V+ G  H++A +++G+++ WG +  G  G +GK            
Sbjct: 146 IPRPIPNLSAVKVTQVAAGAHHSVALSDNGRVYTWGSNKQGACG-IGK------------ 192

Query: 222 RSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGR 281
                       +I++A + V + +E E                + +IACGF H+ V   
Sbjct: 193 ----------PGSIQRAPQRVKDKLENEL---------------IAEIACGFAHTCVRTN 227

Query: 282 NGVLLSCGSNVYGQLGREKQDMGMFP-----VDINFHPVSISSGLGHSLAI 327
            G L   G N +GQ G +  ++ + P       +     SI+ G  HSLAI
Sbjct: 228 GGDLYCFGFNRHGQCGADPSNLPIVPQPRLVSQLRRRVASIACGRHHSLAI 278



 Score = 41.2 bits (95), Expect = 0.87,   Method: Compositional matrix adjust.
 Identities = 46/185 (24%), Positives = 76/185 (41%), Gaps = 40/185 (21%)

Query: 29  VVSFGDGSQGALGL-PTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWA 87
           +  FG    G  G  P++L  V     +P  V  L   V S++ G +HSLA+ N+G V++
Sbjct: 231 LYCFGFNRHGQCGADPSNLPIVP----QPRLVSQLRRRVASIACGRHHSLAILNDGNVYS 286

Query: 88  WGRNNEVQLGRGALESRATW-------NDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSL 140
           WG     +LG  A+  R          N  K +   + V + +   + + S A     S 
Sbjct: 287 WGGAEGGRLGSEAVHERHQQTQRELAANPLKELATENYVPLSSCLPAVIKSLA---PNSE 343

Query: 141 WVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSA 200
            + GK                         G ++V+ + GW H+L  T  G + G G ++
Sbjct: 344 LIGGK-------------------------GARVVRAAGGWYHSLFLTNAGMVLGTGDTS 378

Query: 201 DGRIG 205
            G++G
Sbjct: 379 AGQLG 383



 Score = 39.3 bits (90), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 18/35 (51%), Positives = 24/35 (68%)

Query: 263 GVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLG 297
           G E+  IACG  H+L++  +GV +S GSN  GQLG
Sbjct: 73  GTEIAKIACGDRHTLLVTASGVCMSVGSNRTGQLG 107


>gi|254390852|ref|ZP_05006063.1| BNR repeat domain-containing protein [Streptomyces clavuligerus
           ATCC 27064]
 gi|197704550|gb|EDY50362.1| BNR repeat domain-containing protein [Streptomyces clavuligerus
           ATCC 27064]
          Length = 564

 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 97/340 (28%), Positives = 146/340 (42%), Gaps = 75/340 (22%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLP-SDVTSVSAGHY------HSLAVTN 81
           V S+G    G LG  T +     D Y PT +P LP  DV  ++AG         ++A+ N
Sbjct: 189 VQSWGANVTGQLGNATMI-----DRYAPTPIPALPKQDVQQLAAGADATSGSGFAVALLN 243

Query: 82  NGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAA---FASGVVSSAIGDDG 138
           +  VW WG+N++ QLG G L ++A    P RV GL+ +   AA    A  + ++    DG
Sbjct: 244 DNTVWTWGQNDKGQLGTG-LVTKAI-PVPGRVPGLNGITQVAAGSLHALALRNNGDPQDG 301

Query: 139 SLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGY 198
            +W WG +  GQLG   ++ +  VP  V+ L G   + V+ G  H+LA  E G L  WG 
Sbjct: 302 -VWAWGDNIHGQLGDSTNVPK-TVPVPVQGLTGSGTIAVATGCEHSLALREGGTLMAWGN 359

Query: 199 SADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEP 258
           +  G++GN    L + P++                     + L S               
Sbjct: 360 NDKGQLGNDTILLSTIPVE--------------------VKNLTS--------------- 384

Query: 259 FLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFHPV--- 315
                  VV+IA G + SL    +G + + G N +G+LG  +    + PV +   P    
Sbjct: 385 ------PVVEIAAGCNFSLARLADGTIKAWGENGHGELGNGQTANSLTPVSVTGLPPGSA 438

Query: 316 -SISSGLGHSLAI-CEVRSSNVTGGARGIVSWGWNRSSQL 353
             I +G  HS A+  + R          +  WG N   QL
Sbjct: 439 ERIVAGGNHSYALYSDYR----------VYGWGSNDKGQL 468



 Score = 72.0 bits (175), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 81/304 (26%), Positives = 130/304 (42%), Gaps = 65/304 (21%)

Query: 78  AVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIG-- 135
           AV ++  V +WG N   QLG   +  R     P  +  L + +V    A    +S  G  
Sbjct: 182 AVGHDPLVQSWGANVTGQLGNATMIDRYA---PTPIPALPKQDVQQLAAGADATSGSGFA 238

Query: 136 ----DDGSLWVWGKSKRGQLGLGKDITEAI-VPSRVEALAGEKIVKVSFGWGHALAQTED 190
               +D ++W WG++ +GQLG G  +T+AI VP RV  L G  I +V+ G  HALA   +
Sbjct: 239 VALLNDNTVWTWGQNDKGQLGTGL-VTKAIPVPGRVPGLNG--ITQVAAGSLHALALRNN 295

Query: 191 GK----LFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGM 246
           G     ++ WG +  G++G+                         S+ + K   +  +G+
Sbjct: 296 GDPQDGVWAWGDNIHGQLGD-------------------------STNVPKTVPVPVQGL 330

Query: 247 EKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMF 306
                           G   + +A G +HSL L   G L++ G+N  GQLG +   +   
Sbjct: 331 ---------------TGSGTIAVATGCEHSLALREGGTLMAWGNNDKGQLGNDTILLSTI 375

Query: 307 PVDINFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPDN--VPLV 364
           PV++     +++S +    A C    + +  G   I +WG N   +LG     N   P+ 
Sbjct: 376 PVEVK----NLTSPVVEIAAGCNFSLARLADGT--IKAWGENGHGELGNGQTANSLTPVS 429

Query: 365 VEGL 368
           V GL
Sbjct: 430 VTGL 433



 Score = 58.9 bits (141), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 54/185 (29%), Positives = 88/185 (47%), Gaps = 18/185 (9%)

Query: 26  GTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAV 85
           G  ++++G+  +G LG  T L      +  P  V  L S V  ++AG   SLA   +G +
Sbjct: 351 GGTLMAWGNNDKGQLGNDTILL-----STIPVEVKNLTSPVVEIAAGCNFSLARLADGTI 405

Query: 86  WAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGK 145
            AWG N   +LG G   +  T   P  V GL   +     A G  S A+  D  ++ WG 
Sbjct: 406 KAWGENGHGELGNGQTANSLT---PVSVTGLPPGSAERIVAGGNHSYALYSDYRVYGWGS 462

Query: 146 SKRGQLGLGKDITEAIVPSRVEALAGEKIVKVS---FGWGHALAQTE-DGKLFGWGYSAD 201
           + +GQL       +  +  R +A+   K+ KV+    G  + +A T+ +  + GWG +A 
Sbjct: 463 NDKGQL------ADGTINPRTQAMQASKLPKVTSIAAGKDYGIALTDGNQNIIGWGNNAR 516

Query: 202 GRIGN 206
           G++G+
Sbjct: 517 GQLGS 521



 Score = 42.7 bits (99), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 47/171 (27%), Positives = 73/171 (42%), Gaps = 21/171 (12%)

Query: 3   LLKSVVHNHVNVLTSRI----------FMRSASGTAVVSFGDGSQGALGLPTSLTGVGGD 52
           +L S +   V  LTS +            R A GT + ++G+   G LG      G   +
Sbjct: 370 ILLSTIPVEVKNLTSPVVEIAAGCNFSLARLADGT-IKAWGENGHGELG-----NGQTAN 423

Query: 53  AYEPTRVPGLPS-DVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPK 111
           +  P  V GLP      + AG  HS A+ ++  V+ WG N++ QL  G +  R       
Sbjct: 424 SLTPVSVTGLPPGSAERIVAGGNHSYALYSDYRVYGWGSNDKGQLADGTINPR---TQAM 480

Query: 112 RVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIV 162
           +   L +V   AA     ++   G+  ++  WG + RGQLG G      +V
Sbjct: 481 QASKLPKVTSIAAGKDYGIALTDGNQ-NIIGWGNNARGQLGSGTTDPHTLV 530


>gi|158258004|dbj|BAF84975.1| unnamed protein product [Homo sapiens]
          Length = 458

 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 90/313 (28%), Positives = 134/313 (42%), Gaps = 43/313 (13%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAW 88
           V+S G  S G LG+P            P  +      V  ++AG  H++A T +G V+ W
Sbjct: 122 VLSCGSNSFGQLGVPHGPR----RCVVPQAIELHKEKVVCIAAGLRHAVAATASGIVFQW 177

Query: 89  GRNNEVQLGRGALESRA-----TWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVW 143
           G       GR     +      T  +P RV GL+        A    S+++ D G ++VW
Sbjct: 178 G-TGLASCGRRLCPGQTLPLFFTAKEPSRVTGLENSKAMCVLAGSDHSASLTDAGEVYVW 236

Query: 144 GKSKRGQLGLGKDITEAIVPSRVEA--LAGEKIVKVSFGWGHALAQTEDGKLFGWGYSAD 201
           G +K GQL    +     VP ++EA     EK+  +  GW H +AQTE GK+F WG  AD
Sbjct: 237 GSNKHGQLA--NEAAFLPVPQKIEAHCFQNEKVTAIWSGWTHLVAQTETGKMFTWG-RAD 293

Query: 202 GRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLV 261
              G LG+ LE+                     +EK    +         MP    P  +
Sbjct: 294 --YGQLGRKLET----------------YEGWKLEKQDSFLP-CSRPPNSMPS--SPHCL 332

Query: 262 EGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQL--GREKQDMGMFPVD--INFHPVSI 317
            G    +++CG +H+L +   GV  S G N +G    G E       PV   ++   + +
Sbjct: 333 TG--ATEVSCGSEHNLAI-IGGVCYSWGWNEHGMCGDGTEANVWAPKPVQALLSSSGLLV 389

Query: 318 SSGLGHSLAICEV 330
             G GHSLA+C++
Sbjct: 390 GCGAGHSLALCQL 402



 Score = 65.5 bits (158), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 93/352 (26%), Positives = 140/352 (39%), Gaps = 64/352 (18%)

Query: 63  PSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVC 122
           P  V  ++ G  HS  VT+ G ++  G N + QLG G  E    +   K + G     V 
Sbjct: 48  PRSVRRITGGGGHSAVVTDGGDLFVCGLNKDGQLGLGHTEDIPYFTPCKSLFGCPIQQVA 107

Query: 123 AAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWG 182
             +   ++   + ++G +   G +  GQLG+       +VP  +E L  EK+V ++ G  
Sbjct: 108 CGWDFTIM---LTENGQVLSCGSNSFGQLGVPHGPRRCVVPQAIE-LHKEKVVCIAAGLR 163

Query: 183 HALAQTEDGKLFGW--GYSADGRIGNLGKALESSPLDSNIDRSS-----ESDQEIS---- 231
           HA+A T  G +F W  G ++ GR    G+ L   PL       S     E+ + +     
Sbjct: 164 HAVAATASGIVFQWGTGLASCGRRLCPGQTL---PLFFTAKEPSRVTGLENSKAMCVLAG 220

Query: 232 ---SSTIEKAQKLVSEGMEKE-------KYMPIIW--EPFLVEGVEVVDIACGFDHSLVL 279
              S+++  A ++   G  K         ++P+    E    +  +V  I  G+ H +  
Sbjct: 221 SDHSASLTDAGEVYVWGSNKHGQLANEAAFLPVPQKIEAHCFQNEKVTAIWSGWTHLVAQ 280

Query: 280 GRNGVLLSCGSNVYGQLGR----------EKQDMGMFPVD--INFHPVS---------IS 318
              G + + G   YGQLGR          EKQD    P     N  P S         +S
Sbjct: 281 TETGKMFTWGRADYGQLGRKLETYEGWKLEKQD-SFLPCSRPPNSMPSSPHCLTGATEVS 339

Query: 319 SGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPDNV--PLVVEGL 368
            G  H+LAI         GG     SWGWN     G     NV  P  V+ L
Sbjct: 340 CGSEHNLAI--------IGGV--CYSWGWNEHGMCGDGTEANVWAPKPVQAL 381



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 63/228 (27%), Positives = 97/228 (42%), Gaps = 58/228 (25%)

Query: 149 GQLGLGKDITEAIVPSRVEALAGEKIVK-VSFGWGHALAQTEDGKLFGWGYSADGRIGNL 207
           GQLGLG    + ++P ++      + V+ ++ G GH+   T+ G LF  G + DG++G L
Sbjct: 26  GQLGLGHK-EDVLLPQQLNDFCKPRSVRRITGGGGHSAVVTDGGDLFVCGLNKDGQLG-L 83

Query: 208 GKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVV 267
           G                   ++I   T  K+                      + G  + 
Sbjct: 84  GHT-----------------EDIPYFTPCKS----------------------LFGCPIQ 104

Query: 268 DIACGFDHSLVLGRNGVLLSCGSNVYGQLG-REKQDMGMFPVDINFHP---VSISSGLGH 323
            +ACG+D +++L  NG +LSCGSN +GQLG        + P  I  H    V I++GL H
Sbjct: 105 QVACGWDFTIMLTENGQVLSCGSNSFGQLGVPHGPRRCVVPQAIELHKEKVVCIAAGLRH 164

Query: 324 SLAICEVRSSNVTGGARGIV-SWGWNRSSQLGRMGP-DNVPLVVEGLE 369
           ++A            A GIV  WG   +S   R+ P   +PL     E
Sbjct: 165 AVA----------ATASGIVFQWGTGLASCGRRLCPGQTLPLFFTAKE 202


>gi|4506581|ref|NP_000319.1| X-linked retinitis pigmentosa GTPase regulator isoform A [Homo
           sapiens]
 gi|1314871|gb|AAC50481.1| retinitis pigmentosa GTPase regulator [Homo sapiens]
 gi|2204218|emb|CAA66258.1| XLRP3 [Homo sapiens]
 gi|119579845|gb|EAW59441.1| retinitis pigmentosa GTPase regulator, isoform CRA_a [Homo sapiens]
          Length = 815

 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 79/267 (29%), Positives = 124/267 (46%), Gaps = 51/267 (19%)

Query: 32  FGDGSQGALGLPTSLTGVGGDAYEPTRVPGL-PSDVTSVSAGHYHSLAVTNNGAVWAWGR 90
           FG  + G LGL     G      +PT V  L P  V   + G  H+L  T  G V+A G 
Sbjct: 59  FGSNNWGQLGL-----GSKSAISKPTCVKALKPEKVKLAACGRNHTLVSTEGGNVYATGG 113

Query: 91  NNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQ 150
           NNE QLG G  E R T++         ++   +A ++   S+A+ +DG L++WG +  GQ
Sbjct: 114 NNEGQLGLGDTEERNTFHVISFFTSEHKIKQLSAGSN--TSAALTEDGRLFMWGDNSEGQ 171

Query: 151 LGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKA 210
           +GL K+++   VP +V    G+ +  +S G+ H+   T DG+L+ +G   +G++G   + 
Sbjct: 172 IGL-KNVSNVCVPQQV--TIGKPVSWISCGYYHSAFVTTDGELYVFGEPENGKLGLPNQL 228

Query: 211 LESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIA 270
           L +                       +  +LVSE  EK                 V+ +A
Sbjct: 229 LGN----------------------HRTPQLVSEIPEK-----------------VIQVA 249

Query: 271 CGFDHSLVLGRNGVLLSCGSNVYGQLG 297
           CG +H++VL  N V  + G   +GQLG
Sbjct: 250 CGGEHTVVLTENAV-YTFGLGQFGQLG 275



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 66/239 (27%), Positives = 101/239 (42%), Gaps = 51/239 (21%)

Query: 69  VSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGL--DQVNVCAAFA 126
           +S G  HS  VT N  ++ +G NN  QLG G   S++  + P  V+ L  ++V + A   
Sbjct: 40  LSCGDEHSAVVTGNNKLYMFGSNNWGQLGLG---SKSAISKPTCVKALKPEKVKLAACGR 96

Query: 127 SGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGE-KIVKVSFGWGHAL 185
           +  + S  G  G+++  G +  GQLGLG D  E      +     E KI ++S G   + 
Sbjct: 97  NHTLVSTEG--GNVYATGGNNEGQLGLG-DTEERNTFHVISFFTSEHKIKQLSAGSNTSA 153

Query: 186 AQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEG 245
           A TEDG+LF WG +++G+IG    +    P    I +                       
Sbjct: 154 ALTEDGRLFMWGDNSEGQIGLKNVSNVCVPQQVTIGK----------------------- 190

Query: 246 MEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMG 304
                  P+ W            I+CG+ HS  +  +G L   G    G+LG   Q +G
Sbjct: 191 -------PVSW------------ISCGYYHSAFVTTDGELYVFGEPENGKLGLPNQLLG 230



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 53/184 (28%), Positives = 90/184 (48%), Gaps = 18/184 (9%)

Query: 33  GDGSQGALGLPTSLTGVGGDAYEPTRVP-GLPSDVTSVSAGHYHSLAVTNNGAVWAWGRN 91
           GD S+G +GL         +   P +V  G P  V+ +S G+YHS  VT +G ++ +G  
Sbjct: 165 GDNSEGQIGLKNV-----SNVCVPQQVTIGKP--VSWISCGYYHSAFVTTDGELYVFG-- 215

Query: 92  NEVQLGRGALESRATWND--PKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRG 149
            E + G+  L ++   N   P+ V  + +  +    A G   + +  + +++ +G  + G
Sbjct: 216 -EPENGKLGLPNQLLGNHRTPQLVSEIPEKVI--QVACGGEHTVVLTENAVYTFGLGQFG 272

Query: 150 QLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGK 209
           QLGLG  + E   P  +E +  + I  +S G  H    T+ G ++ +G   DGR G LG 
Sbjct: 273 QLGLGTFLFETSEPKVIENIRDQTISYISCGENHTALITDIGLMYTFG---DGRHGKLGL 329

Query: 210 ALES 213
            LE+
Sbjct: 330 GLEN 333


>gi|403263569|ref|XP_003924096.1| PREDICTED: uncharacterized protein LOC101049856 [Saimiri
           boliviensis boliviensis]
          Length = 1170

 Score = 89.7 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 80/285 (28%), Positives = 139/285 (48%), Gaps = 24/285 (8%)

Query: 32  FGDGSQGALGLPTSLTGVGGDAYEPTRVPGL-PSDVTSVSAGHYHSLAVTNNGAVWAWGR 90
           FG  + G LGL     G      +PT V  L P  V   + G  H+L  T  G V+A G 
Sbjct: 59  FGSNNWGQLGL-----GSKSAVSKPTCVKALKPEKVKLAACGRNHTLVSTEGGNVYATGG 113

Query: 91  NNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQ 150
           N+E QLG G  E R T++         ++   +A ++   S+A+ +DG L++WG +  GQ
Sbjct: 114 NDEGQLGLGDTEERTTFHLISFFTPQHKIKQLSAGSN--TSAALTEDGRLFMWGDNSEGQ 171

Query: 151 LGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKA 210
           +GL  D+  A VP +V    G+ +  +S G+ H+   T DG+L+ +G   +G++G   + 
Sbjct: 172 IGL-PDMPNACVPHQVT--TGKPVSWISCGYYHSAFVTTDGELYIFGEPENGKLGLPYEL 228

Query: 211 LESSPLDSNIDRSSESDQEISS----STIEKAQKLVSEGMEK------EKYMPIIWEPFL 260
           L +  +   +    E   +++     S +     L + G+ K        ++    EP +
Sbjct: 229 LSNHRIPQLVPEIPEKVIQVACGGEHSVVLTENDLYTFGLGKFGQLGLGTFLFETSEPRV 288

Query: 261 VE---GVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQD 302
           VE   G ++  I+CG +H+ +L   G++ + G   +G+LG E ++
Sbjct: 289 VESIKGRKISYISCGENHAALLTDTGLMYTFGDGRHGKLGLELEN 333



 Score = 69.3 bits (168), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 73/243 (30%), Positives = 119/243 (48%), Gaps = 21/243 (8%)

Query: 69  VSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGL--DQVNVCAAFA 126
           +S G  HS  VT N  ++ +G NN  QLG G   S++  + P  V+ L  ++V + A   
Sbjct: 40  LSCGDEHSAVVTGNNKLYVFGSNNWGQLGLG---SKSAVSKPTCVKALKPEKVKLAACGR 96

Query: 127 SGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGE-KIVKVSFGWGHAL 185
           +  + S  G  G+++  G +  GQLGLG D  E      +     + KI ++S G   + 
Sbjct: 97  NHTLVSTEG--GNVYATGGNDEGQLGLG-DTEERTTFHLISFFTPQHKIKQLSAGSNTSA 153

Query: 186 AQTEDGKLFGWGYSADGRIG--NLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVS 243
           A TEDG+LF WG +++G+IG  ++  A     + +    S  S     S+ +    +L  
Sbjct: 154 ALTEDGRLFMWGDNSEGQIGLPDMPNACVPHQVTTGKPVSWISCGYYHSAFVTTDGELYI 213

Query: 244 EGMEKEKYMPIIWE-------PFLVEGV--EVVDIACGFDHSLVLGRNGVLLSCGSNVYG 294
            G  +   + + +E       P LV  +  +V+ +ACG +HS+VL  N  L + G   +G
Sbjct: 214 FGEPENGKLGLPYELLSNHRIPQLVPEIPEKVIQVACGGEHSVVLTEND-LYTFGLGKFG 272

Query: 295 QLG 297
           QLG
Sbjct: 273 QLG 275


>gi|308802742|ref|XP_003078684.1| FOG: RCC1 domain (ISS) [Ostreococcus tauri]
 gi|116057137|emb|CAL51564.1| FOG: RCC1 domain (ISS) [Ostreococcus tauri]
          Length = 419

 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 102/346 (29%), Positives = 151/346 (43%), Gaps = 54/346 (15%)

Query: 16  TSRIFMRSASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPS-DVTSVSAGHY 74
           TSR F   ++G     FG    G +     ++    + + P R  GL   DVT  +AG  
Sbjct: 21  TSRAFTALSAGNG--DFGRLGHGQVLTDDDVSFRSSNYFHPVR--GLEDVDVTQCAAGGA 76

Query: 75  HSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAI 134
           HS+ + + G V+A G NN  QLG G   +      P+       V V    A    +  +
Sbjct: 77  HSIFLAHGGFVFACGLNNYGQLGHGKHSAHV----PEAALVDLDVEVVRVAAGNNHTLCV 132

Query: 135 GDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGE-KIVKVSFGWGHALAQTEDGKL 193
             DG +W +GK++ GQLG G D+ +   P R+E LA E KIV V+ G  H+LA +ED ++
Sbjct: 133 DVDGGVWAFGKNEGGQLGTGLDL-DGFQPRRIETLALEGKIVDVASGAEHSLALSEDARV 191

Query: 194 FGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMP 253
           + WG SADG +G+                 SE+  E       +  K V+    K + + 
Sbjct: 192 YSWGTSADGVLGH----------------GSETWNE---GWFYRTAKTVA----KPRLLR 228

Query: 254 IIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQ--DMGMFP--VD 309
            + E       +V  IA G  HS  +   G L + G   + QLG+  +  D    P  VD
Sbjct: 229 ALSE------TKVRSIAAGHMHSACVDERGELFTWGQGRFNQLGQTSKYVDHETAPKSVD 282

Query: 310 INFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGR 355
                  ++ G  H+LA              G+VSWG N+  +LG 
Sbjct: 283 TLRFVHQVTCGGLHTLASTSA----------GVVSWGANQHGELGH 318



 Score = 71.6 bits (174), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 78/294 (26%), Positives = 127/294 (43%), Gaps = 50/294 (17%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVP--GLPSDVTSVSAGHYHSLAVTNNGAVW 86
           V +FG    G LG     TG+  D ++P R+    L   +  V++G  HSLA++ +  V+
Sbjct: 138 VWAFGKNEGGQLG-----TGLDLDGFQPRRIETLALEGKIVDVASGAEHSLALSEDARVY 192

Query: 87  AWGRNNEVQLGRGALESRATWND------------PKRVEGLDQVNVCAAFASGVVSSAI 134
           +WG + +  LG G+     TWN+            P+ +  L +  V +  A  + S+ +
Sbjct: 193 SWGTSADGVLGHGS----ETWNEGWFYRTAKTVAKPRLLRALSETKVRSIAAGHMHSACV 248

Query: 135 GDDGSLWVWGKSKRGQLG-LGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKL 193
            + G L+ WG+ +  QLG   K +     P  V+ L    + +V+ G  H LA T  G +
Sbjct: 249 DERGELFTWGQGRFNQLGQTSKYVDHETAPKSVDTL--RFVHQVTCGGLHTLASTSAG-V 305

Query: 194 FGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEIS-----SSTIEKAQKLVSEGM-- 246
             WG +  G +G+   +   S +   I  SS    ++S     S+ +    KL + G   
Sbjct: 306 VSWGANQHGELGHGSNSDAKSAIPKPIKLSSRGWSKLSAGWKHSAGVSNDGKLFAWGFGG 365

Query: 247 -----EKEKYMP----------IIWEPFLV-EGVEVVDIACGFDHSLVLGRNGV 284
                  EK               WEP  V    + V ++CGF+H+L L R G 
Sbjct: 366 SVGSHSDEKLSSGGQLGLGNDFDYWEPTEVWLPGDAVGVSCGFNHTLALVRLGA 419


>gi|340378681|ref|XP_003387856.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC1-like
           [Amphimedon queenslandica]
          Length = 599

 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 80/306 (26%), Positives = 138/306 (45%), Gaps = 21/306 (6%)

Query: 62  LPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEG-LDQVN 120
           L  +VT ++ G  H++A+ + G V++WG   +  LG G L  R +   P  ++G L  VN
Sbjct: 193 LGQNVTMIACGGSHTIALNSKGQVFSWGAGPQGCLGHGNLRDRYS---PLMIDGPLRDVN 249

Query: 121 VCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFG 180
           V         S+ I +DG+L+ WGK+      +   +T+   P  V+AL G +IV+V+ G
Sbjct: 250 VVHVACYENHSAVISEDGNLYTWGKAGPFLGYMDDSVTKQTKPRLVDALYGTRIVQVACG 309

Query: 181 WGHALAQTEDGKLFGWGYSADGRIGN-LGKALESSPLDSN-IDRSSESDQEISSSTIEK- 237
             H L   E+G+++ +G +  G +G    KA+    +  N +     S     S+ I++ 
Sbjct: 310 RSHTLVIDEEGRVYSFGINKFGELGQGHDKAITKPTMVPNLVSICKVSCGRHHSAAIDED 369

Query: 238 ---------AQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSC 288
                    A+  + +G  K  + P     F  + +E  D++CG+ H+  +  NGV    
Sbjct: 370 GVLFMWGWGARGQLGQGEPKSLFSPTPVNGFNDQPLE--DVSCGYGHTAAITANGVAYCW 427

Query: 289 GSNVYGQLGREKQDMGMFPVDINFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWN 348
           G N   Q G      G      +   + + SG+  +   C    + +      + +WG N
Sbjct: 428 GDNASSQCGVPSSVYGELS---SPRGIVLPSGIRPTQINCGANFTVLVTSIGQLFTWGCN 484

Query: 349 RSSQLG 354
            S QLG
Sbjct: 485 MSGQLG 490



 Score = 72.8 bits (177), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 71/253 (28%), Positives = 110/253 (43%), Gaps = 34/253 (13%)

Query: 140 LWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYS 199
           L++WG   RG+LG  KD     +P+ VE+L G+ +  ++ G  H +A    G++F WG  
Sbjct: 164 LYLWGGGDRGRLG-HKDDKPRFLPNVVESLLGQNVTMIACGGSHTIALNSKGQVFSWGAG 222

Query: 200 ADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKE---KYMPII- 255
             G +G+       SPL   ID        +  +  E    ++SE        K  P + 
Sbjct: 223 PQGCLGHGNLRDRYSPL--MIDGPLRDVNVVHVACYENHSAVISEDGNLYTWGKAGPFLG 280

Query: 256 ---------WEPFLVE---GVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDM 303
                     +P LV+   G  +V +ACG  H+LV+   G + S G N +G+LG+     
Sbjct: 281 YMDDSVTKQTKPRLVDALYGTRIVQVACGRSHTLVIDEEGRVYSFGINKFGELGQGHDKA 340

Query: 304 GMFPVDI-NFHPVS-ISSGLGHSLAICEVRSSNVTGGARGIV-SWGWNRSSQLGRMGPDN 360
              P  + N   +  +S G  HS AI E           G++  WGW    QLG+  P +
Sbjct: 341 ITKPTMVPNLVSICKVSCGRHHSAAIDE----------DGVLFMWGWGARGQLGQGEPKS 390

Query: 361 V--PLVVEGLEGE 371
           +  P  V G   +
Sbjct: 391 LFSPTPVNGFNDQ 403



 Score = 61.2 bits (147), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 51/179 (28%), Positives = 81/179 (45%), Gaps = 10/179 (5%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAW 88
           V SFG    G LG      G      +PT VP L S +  VS G +HS A+  +G ++ W
Sbjct: 322 VYSFGINKFGELG-----QGHDKAITKPTMVPNLVS-ICKVSCGRHHSAAIDEDGVLFMW 375

Query: 89  GRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKR 148
           G     QLG+G  +S  +   P  V G +   +         ++AI  +G  + WG +  
Sbjct: 376 GWGARGQLGQGEPKSLFS---PTPVNGFNDQPLEDVSCGYGHTAAITANGVAYCWGDNAS 432

Query: 149 GQLGLGKDIT-EAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGN 206
            Q G+   +  E   P  +   +G +  +++ G    +  T  G+LF WG +  G++GN
Sbjct: 433 SQCGVPSSVYGELSSPRGIVLPSGIRPTQINCGANFTVLVTSIGQLFTWGCNMSGQLGN 491



 Score = 52.8 bits (125), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 55/178 (30%), Positives = 76/178 (42%), Gaps = 27/178 (15%)

Query: 35  GSQGALGL--PTSLTGVGGDAYEPTRVPGLPSD-VTSVSAGHYHSLAVTNNGAVWAWGRN 91
           G++G LG   P SL       + PT V G     +  VS G+ H+ A+T NG  + WG N
Sbjct: 378 GARGQLGQGEPKSL-------FSPTPVNGFNDQPLEDVSCGYGHTAAITANGVAYCWGDN 430

Query: 92  NEVQLG-----RGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKS 146
              Q G      G L S      P  +    Q+N  A F   V S      G L+ WG +
Sbjct: 431 ASSQCGVPSSVYGELSSPRGIVLPSGIRPT-QINCGANFTVLVTSI-----GQLFTWGCN 484

Query: 147 KRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRI 204
             GQLG G+       P  VE+L+ +++  V+ G  H       G L G G+  D  +
Sbjct: 485 MSGQLGNGEAKKTFSQPMPVESLSEKRVKMVACGEDHI------GCLVGHGWVPDEEV 536


>gi|356508943|ref|XP_003523212.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC2-like [Glycine
           max]
          Length = 441

 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 77/273 (28%), Positives = 125/273 (45%), Gaps = 54/273 (19%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRV---PGLPSDVTSVSAGHYHSLAVTNNGAV 85
           V S+G    G LGL     G   D+  P ++    G+P  +  V+AG  HS+A+T NG +
Sbjct: 140 VQSWGRNQNGQLGL-----GNTEDSLVPQKIQAFKGVP--IKMVAAGAEHSVAITENGEL 192

Query: 86  WAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGK 145
           + WG      LG G    R  WN P++V  +D   +         + ++   G ++ +G 
Sbjct: 193 YGWGWGRYGNLGLGDRNDR--WN-PEKVSSVDCDKMVMVACGWRHTISVSSSGGIYTYGW 249

Query: 146 SKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIG 205
           SK GQLG G +  +++VP +++AL+ + I +VS GW H++A T  G LFGWG++  G++G
Sbjct: 250 SKYGQLGHG-NFEDSLVPQKLQALSDKLISQVSGGWRHSMALTSTGLLFGWGWNKFGQVG 308

Query: 206 NLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVE 265
                     +  N+D  S                            P+  +    +   
Sbjct: 309 ----------VGDNLDHCS----------------------------PV--QVKFPQDQR 328

Query: 266 VVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGR 298
           VV I+CG+ H++ +     + S G    GQLG 
Sbjct: 329 VVQISCGWRHTIAVTEKENVFSWGRGTNGQLGH 361



 Score = 85.5 bits (210), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 94/388 (24%), Positives = 159/388 (40%), Gaps = 90/388 (23%)

Query: 55  EPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVE 114
           E T     PS V  +SAG  H++A+ +   V +WGR  + QLG G  + R     P ++ 
Sbjct: 5   EATAATSPPSRVLLISAGASHTVALLSGNVVCSWGRGEDGQLGHGDTDDRPL---PTQLS 61

Query: 115 GLDQVNV----CAAFASGVVSS-------------------------------------- 132
            LD  ++    C A  +   S                                       
Sbjct: 62  ALDAQHIDSIACGADHTLAYSESRNELYSWGWGDFGRLGHGNSSDLLIPQPIIALQGLRI 121

Query: 133 ---AIGD--------DGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGW 181
              A GD        +G +  WG+++ GQLGLG +  +++VP +++A  G  I  V+ G 
Sbjct: 122 KQIACGDSHCLAVTMEGEVQSWGRNQNGQLGLG-NTEDSLVPQKIQAFKGVPIKMVAAGA 180

Query: 182 GHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEI-------SSST 234
            H++A TE+G+L+GWG+   GR GNLG    +   +     S + D+ +        + +
Sbjct: 181 EHSVAITENGELYGWGW---GRYGNLGLGDRNDRWNPEKVSSVDCDKMVMVACGWRHTIS 237

Query: 235 IEKAQKLVSEGMEKEKYM-------PIIWEPFLVEGVEVV-DIACGFDHSLVLGRNGVLL 286
           +  +  + + G  K   +        ++ +       +++  ++ G+ HS+ L   G+L 
Sbjct: 238 VSSSGGIYTYGWSKYGQLGHGNFEDSLVPQKLQALSDKLISQVSGGWRHSMALTSTGLLF 297

Query: 287 SCGSNVYGQLGREKQDMGMFPVDINF----HPVSISSGLGHSLAICEVRSSNVTGGARGI 342
             G N +GQ+G         PV + F      V IS G  H++A+ E            +
Sbjct: 298 GWGWNKFGQVGVGDNLDHCSPVQVKFPQDQRVVQISCGWRHTIAVTE---------KENV 348

Query: 343 VSWGWNRSSQLGRMGP--DNVPLVVEGL 368
            SWG   + QLG       N P ++E L
Sbjct: 349 FSWGRGTNGQLGHGDTIDRNSPKIIEAL 376



 Score = 74.3 bits (181), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 52/185 (28%), Positives = 95/185 (51%), Gaps = 10/185 (5%)

Query: 32  FGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSD-VTSVSAGHYHSLAVTNNGAVWAWGR 90
           +G G  G LGL     G   D + P +V  +  D +  V+ G  H+++V+++G ++ +G 
Sbjct: 195 WGWGRYGNLGL-----GDRNDRWNPEKVSSVDCDKMVMVACGWRHTISVSSSGGIYTYGW 249

Query: 91  NNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQ 150
           +   QLG G  E       P++++ L    +         S A+   G L+ WG +K GQ
Sbjct: 250 SKYGQLGHGNFEDSLV---PQKLQALSDKLISQVSGGWRHSMALTSTGLLFGWGWNKFGQ 306

Query: 151 LGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKA 210
           +G+G ++ +   P +V+    +++V++S GW H +A TE   +F WG   +G++G+    
Sbjct: 307 VGVGDNL-DHCSPVQVKFPQDQRVVQISCGWRHTIAVTEKENVFSWGRGTNGQLGHGDTI 365

Query: 211 LESSP 215
             +SP
Sbjct: 366 DRNSP 370


>gi|125972780|ref|YP_001036690.1| dockerin type I cellulosome protein [Clostridium thermocellum ATCC
           27405]
 gi|256004969|ref|ZP_05429941.1| cellulosome protein dockerin type I [Clostridium thermocellum DSM
           2360]
 gi|281416977|ref|ZP_06247997.1| Dockerin type 1 [Clostridium thermocellum JW20]
 gi|385779304|ref|YP_005688469.1| Dockerin type 1 [Clostridium thermocellum DSM 1313]
 gi|419721626|ref|ZP_14248784.1| Dockerin type 1 protein [Clostridium thermocellum AD2]
 gi|419725441|ref|ZP_14252484.1| Dockerin type 1 protein [Clostridium thermocellum YS]
 gi|125713005|gb|ABN51497.1| Dockerin type 1 [Clostridium thermocellum ATCC 27405]
 gi|255991038|gb|EEU01148.1| cellulosome protein dockerin type I [Clostridium thermocellum DSM
           2360]
 gi|281408379|gb|EFB38637.1| Dockerin type 1 [Clostridium thermocellum JW20]
 gi|316940984|gb|ADU75018.1| Dockerin type 1 [Clostridium thermocellum DSM 1313]
 gi|380771190|gb|EIC05067.1| Dockerin type 1 protein [Clostridium thermocellum YS]
 gi|380782322|gb|EIC11962.1| Dockerin type 1 protein [Clostridium thermocellum AD2]
          Length = 469

 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 57/154 (37%), Positives = 89/154 (57%), Gaps = 11/154 (7%)

Query: 54  YEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRV 113
           +EP +   L SD+ S++AG  HS+A+ ++G VW WG N   +LG G         +PK+V
Sbjct: 310 FEPNQAKNL-SDIVSIAAGDAHSVALKSDGTVWTWGSNFNGELGNGTTTYIL---EPKKV 365

Query: 114 EGLDQVNVCAAFASGV-VSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGE 172
           EGL+ +    A  +G+  + A+  DG++WVWGK+  GQLG G  +  + VP +VE L G 
Sbjct: 366 EGLEDI---VAIDAGIGHTVALKADGTVWVWGKNSYGQLGNGTTM-RSTVPIQVEGLEG- 420

Query: 173 KIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGN 206
            IV +  G    +A   DG ++ WG +  G++G+
Sbjct: 421 -IVAIQAGMECTIAYKNDGTVWAWGKNDFGQLGD 453



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 93/349 (26%), Positives = 148/349 (42%), Gaps = 71/349 (20%)

Query: 32  FGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRN 91
            G+  +G LGLP  ++ V     EP  + GL S + SV+AG  H+LA+  +G +WAWG N
Sbjct: 133 LGNNGKGQLGLP-EVSAVN----EPVMINGL-SGIKSVAAGREHTLALQEDGTLWAWGNN 186

Query: 92  NEVQL----GRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSK 147
             +QL     R         + P +VE    +   AA  S  +   + +DG++W++    
Sbjct: 187 YSLQLIEYMERDPDTKERFTSIPIKVETHSDIKYVAAKFSRTL--IVKNDGTVWLYSLPP 244

Query: 148 RGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNL 207
                +        +P  ++     K+  +  G GH +A  EDG ++ WG +  G++GN 
Sbjct: 245 -----INTSSDAEYMPWEIKGFGDIKMADI--GTGHIVALREDGTVWTWGENVWGQLGN- 296

Query: 208 GKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGV-EV 266
                            +    I +                     I +EP   + + ++
Sbjct: 297 ---------------GWQQHHNIHTY--------------------IYFEPNQAKNLSDI 321

Query: 267 VDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDIN--FHPVSISSGLGHS 324
           V IA G  HS+ L  +G + + GSN  G+LG       + P  +      V+I +G+GH+
Sbjct: 322 VSIAAGDAHSVALKSDGTVWTWGSNFNGELGNGTTTYILEPKKVEGLEDIVAIDAGIGHT 381

Query: 325 LAICEVRSSNVTGGARGIV-SWGWNRSSQLGR--MGPDNVPLVVEGLEG 370
           +A+           A G V  WG N   QLG        VP+ VEGLEG
Sbjct: 382 VAL----------KADGTVWVWGKNSYGQLGNGTTMRSTVPIQVEGLEG 420



 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 81/313 (25%), Positives = 133/313 (42%), Gaps = 63/313 (20%)

Query: 4   LKSVVHNHVNVLTSRIFMRSASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLP 63
           +K   H+ +  + ++ F R+     ++   DG+     LP   T    + Y P  + G  
Sbjct: 210 IKVETHSDIKYVAAK-FSRT-----LIVKNDGTVWLYSLPPINTSSDAE-YMPWEIKGF- 261

Query: 64  SDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESR----ATWNDPKRVEGL-DQ 118
            D+     G  H +A+  +G VW WG N   QLG G  +        + +P + + L D 
Sbjct: 262 GDIKMADIGTGHIVALREDGTVWTWGENVWGQLGNGWQQHHNIHTYIYFEPNQAKNLSDI 321

Query: 119 VNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVS 178
           V++ A  A  V   A+  DG++W WG +  G+LG G   T  + P +VE L  E IV + 
Sbjct: 322 VSIAAGDAHSV---ALKSDGTVWTWGSNFNGELGNGT-TTYILEPKKVEGL--EDIVAID 375

Query: 179 FGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKA 238
            G GH +A   DG ++ WG ++ G++GN G  + S+                        
Sbjct: 376 AGIGHTVALKADGTVWVWGKNSYGQLGN-GTTMRSTV----------------------- 411

Query: 239 QKLVSEGMEKEKYMPIIWEPFLVEGVE-VVDIACGFDHSLVLGRNGVLLSCGSNVYGQLG 297
                              P  VEG+E +V I  G + ++    +G + + G N +GQLG
Sbjct: 412 -------------------PIQVEGLEGIVAIQAGMECTIAYKNDGTVWAWGKNDFGQLG 452

Query: 298 REKQDMGMFPVDI 310
               +  + PV +
Sbjct: 453 DGTFENILRPVKV 465



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 81/288 (28%), Positives = 124/288 (43%), Gaps = 53/288 (18%)

Query: 114 EGLDQVNVCAAFASGVVSSAI-GDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGE 172
           E  +  +    F SG   S +   DG++WV G + +GQLGL  +++    P  +  L+G 
Sbjct: 103 EASNNPDAVIQFESGFAHSVLLKKDGTVWVLGNNGKGQLGL-PEVSAVNEPVMINGLSG- 160

Query: 173 KIVKVSFGWGHALAQTEDGKLFGWG--YSADGRIGNLGKALESSPLDSN------IDRSS 224
            I  V+ G  H LA  EDG L+ WG  YS       L + +E  P          I   +
Sbjct: 161 -IKSVAAGREHTLALQEDGTLWAWGNNYSL-----QLIEYMERDPDTKERFTSIPIKVET 214

Query: 225 ESDQEISSSTIEKAQKLVSEGM------------EKEKYMPIIWEPFLVEGVEVVDIACG 272
            SD +  ++   +   + ++G                +YMP  WE      +++ DI  G
Sbjct: 215 HSDIKYVAAKFSRTLIVKNDGTVWLYSLPPINTSSDAEYMP--WEIKGFGDIKMADIGTG 272

Query: 273 FDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFHP---------VSISSGLGH 323
             H + L  +G + + G NV+GQLG   Q        I F P         VSI++G  H
Sbjct: 273 --HIVALREDGTVWTWGENVWGQLGNGWQQHHNIHTYIYFEPNQAKNLSDIVSIAAGDAH 330

Query: 324 SLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPDNV--PLVVEGLE 369
           S+A+     S+ T     + +WG N + +LG      +  P  VEGLE
Sbjct: 331 SVAL----KSDGT-----VWTWGSNFNGELGNGTTTYILEPKKVEGLE 369


>gi|444917320|ref|ZP_21237422.1| hypothetical protein D187_10036 [Cystobacter fuscus DSM 2262]
 gi|444711215|gb|ELW52165.1| hypothetical protein D187_10036 [Cystobacter fuscus DSM 2262]
          Length = 773

 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 69/188 (36%), Positives = 105/188 (55%), Gaps = 14/188 (7%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAW 88
           V ++GD   G LG  T L         P +VPGL ++V ++++G +H+LA+  +G VWAW
Sbjct: 570 VWAWGDNQFGQLGDGTRL-----GRLIPFQVPGL-TNVVAIASGAFHTLALRADGTVWAW 623

Query: 89  GRNNEVQLGRGALES-RATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSK 147
           G N   QLG G+  S R T   P RVEGL  V+  AA     +  A+  DG++W WG++ 
Sbjct: 624 GYNWHGQLGDGSTSSFRPT---PARVEGLTDVSALAAGDWHTL--ALRTDGTVWAWGRNG 678

Query: 148 RGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNL 207
            GQL  G  +    VP++V  + G + V +S G  ++LA+  DG   GWG +A  +IG+ 
Sbjct: 679 SGQLADGT-VEPRSVPTQVTGVKG-RAVALSAGADNSLARLADGTALGWGSNAFSKIGDG 736

Query: 208 GKALESSP 215
              + ++P
Sbjct: 737 VSTVHAAP 744



 Score = 87.8 bits (216), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 91/310 (29%), Positives = 134/310 (43%), Gaps = 71/310 (22%)

Query: 55  EPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVE 114
           EPT + GL +D+ +++    H LA+  +G VWAWG N   QLG G  ESR T     +V 
Sbjct: 182 EPTHLAGL-TDIAAIATSPSHRLALRADGTVWAWGSNQTGQLGDGTTESRGT---VAQVT 237

Query: 115 GLDQVNVCAA--FASGVV-----SSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVE 167
            L  V   AA    SG +     S A+  DG++W WG ++ GQLG G +   +  P+RV+
Sbjct: 238 ALTDVVAIAAGGTGSGTINKTGHSLALRRDGTVWAWGDNQFGQLGDGTNQPRS-TPARVQ 296

Query: 168 ALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESD 227
            L    +V +S     +LA   DG ++ WG   DG +G                      
Sbjct: 297 GL--TNVVSISGNSRSSLALRRDGTVWAWGDRMDGPLGG--------------------- 333

Query: 228 QEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVE-VVDIACGFDHSLVLGRNGVLL 286
                          + G++          P  V+G+  V+ IA G   +L L R+G L 
Sbjct: 334 ---------------TSGLQTT--------PAQVQGLRGVMAIAAGGRQALALRRDGTLW 370

Query: 287 SCGSNVYGQLGREKQDMGMFPVDINF--HPVSISSGLGHSLAICEVRSSNVTGGARGIVS 344
             G N +GQLG    ++   PV +      VS++    H+LA+    S         + +
Sbjct: 371 GWGDNRFGQLG-TGSNLRTVPVPLKDLGSEVSVAFNSYHALAVRADGS---------LWA 420

Query: 345 WGWNRSSQLG 354
           WG N   QLG
Sbjct: 421 WGSNHRGQLG 430



 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 98/327 (29%), Positives = 136/327 (41%), Gaps = 71/327 (21%)

Query: 56  PTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEG 115
           P RVPGL  DV +V+ G  HSLA+  +G VW WG N   QLG G  E   T   P+ +  
Sbjct: 82  PIRVPGL-QDVEAVANGSLHSLALRRDGTVWTWGDNQFGQLGTG--EPWVTHATPQHLPS 138

Query: 116 LDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIV 175
           L   NV A  AS   S A+  DG++WVWG ++ GQLG G      + P+ +  L    I 
Sbjct: 139 L--TNVAAIAASEDHSLALRRDGTVWVWGNNRYGQLG-GAGNVLLLEPTHLAGL--TDIA 193

Query: 176 KVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTI 235
            ++    H LA   DG ++ WG +  G++G               D ++E     S  T+
Sbjct: 194 AIATSPSHRLALRADGTVWAWGSNQTGQLG---------------DGTTE-----SRGTV 233

Query: 236 EKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACG---------FDHSLVLGRNGVLL 286
            +   L                       +VV IA G           HSL L R+G + 
Sbjct: 234 AQVTAL----------------------TDVVAIAAGGTGSGTINKTGHSLALRRDGTVW 271

Query: 287 SCGSNVYGQLGREKQDMGMFPVDIN--FHPVSISSGLGHSLAICEVRSSNVTGGARGIVS 344
           + G N +GQLG         P  +    + VSIS   G+S +   +R          + +
Sbjct: 272 AWGDNQFGQLGDGTNQPRSTPARVQGLTNVVSIS---GNSRSSLALRRDGT------VWA 322

Query: 345 WGWNRSSQL-GRMGPDNVPLVVEGLEG 370
           WG      L G  G    P  V+GL G
Sbjct: 323 WGDRMDGPLGGTSGLQTTPAQVQGLRG 349



 Score = 82.8 bits (203), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 83/288 (28%), Positives = 124/288 (43%), Gaps = 61/288 (21%)

Query: 13  NVLTSRIFMRSASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAG 72
           N  T         GT V ++GD + G +G  T L  +      P +VP L ++V +V+ G
Sbjct: 505 NAATGHALAVRVDGT-VWAWGDNTSGQVGNGTKLRQL-----APIQVPDL-TNVVAVATG 557

Query: 73  HYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSS 132
             HS A+  +G VWAWG N   QLG G    R     P +V GL  V    A ASG   +
Sbjct: 558 SMHSFALRQDGTVWAWGDNQFGQLGDGTRLGRLI---PFQVPGLTNV---VAIASGAFHT 611

Query: 133 -AIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDG 191
            A+  DG++W WG +  GQLG G   +    P+RVE L    +  ++ G  H LA   DG
Sbjct: 612 LALRADGTVWAWGYNWHGQLGDGSTSSFRPTPARVEGL--TDVSALAAGDWHTLALRTDG 669

Query: 192 KLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKY 251
            ++ WG +  G++                                      ++G  + + 
Sbjct: 670 TVWAWGRNGSGQL--------------------------------------ADGTVEPRS 691

Query: 252 MPIIWEPFLVEGVE--VVDIACGFDHSLVLGRNGVLLSCGSNVYGQLG 297
           +P       V GV+   V ++ G D+SL    +G  L  GSN + ++G
Sbjct: 692 VPT-----QVTGVKGRAVALSAGADNSLARLADGTALGWGSNAFSKIG 734



 Score = 82.0 bits (201), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 101/358 (28%), Positives = 161/358 (44%), Gaps = 47/358 (13%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAW 88
           V ++GD   G LG      G       P RV GL ++V S+S     SLA+  +G VWAW
Sbjct: 270 VWAWGDNQFGQLG-----DGTNQPRSTPARVQGL-TNVVSISGNSRSSLALRRDGTVWAW 323

Query: 89  GRNNEVQLG-RGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSK 147
           G   +  LG    L++      P +V+GL  V   AA   G  + A+  DG+LW WG ++
Sbjct: 324 GDRMDGPLGGTSGLQT-----TPAQVQGLRGVMAIAA--GGRQALALRRDGTLWGWGDNR 376

Query: 148 RGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGN- 206
            GQLG G ++    VP  ++ L  E  V V+F   HALA   DG L+ WG +  G++G+ 
Sbjct: 377 FGQLGTGSNLRTVPVP--LKDLGSE--VSVAFNSYHALAVRADGSLWAWGSNHRGQLGDG 432

Query: 207 ----LGKALESSPLDSNIDRSSESDQEISSSTIEKAQK-----LVSEGMEKEKYMPIIWE 257
                 +    S L   +  S  +D   +              L ++G    +  P    
Sbjct: 433 TTETRTEPTRVSGLSDAVAVSLGNDYSFALRADGTVWAWGWYGLFADGTSTSRSTPGP-V 491

Query: 258 PFLVEGVEVVDIA--CGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDIN--FH 313
           P L   +  + +A      H+L +  +G + + G N  GQ+G   +   + P+ +    +
Sbjct: 492 PGLTS-ITALSVAPNAATGHALAVRVDGTVWAWGDNTSGQVGNGTKLRQLAPIQVPDLTN 550

Query: 314 PVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLG---RMGPDNVPLVVEGL 368
            V++++G  HS A+ +  +         + +WG N+  QLG   R+G   +P  V GL
Sbjct: 551 VVAVATGSMHSFALRQDGT---------VWAWGDNQFGQLGDGTRLG-RLIPFQVPGL 598



 Score = 78.6 bits (192), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 107/363 (29%), Positives = 167/363 (46%), Gaps = 53/363 (14%)

Query: 32  FGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRN 91
           +GD   G LG  ++L  V      P  +  L S+V SV+   YH+LAV  +G++WAWG N
Sbjct: 372 WGDNRFGQLGTGSNLRTV------PVPLKDLGSEV-SVAFNSYHALAVRADGSLWAWGSN 424

Query: 92  NEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQL 151
           +  QLG G  E+R     P RV GL   +  A       S A+  DG++W W     G  
Sbjct: 425 HRGQLGDGTTETRTE---PTRVSGLS--DAVAVSLGNDYSFALRADGTVWAW-----GWY 474

Query: 152 GLGKD--ITEAIVPSRVEALAGEKIVKVS--FGWGHALAQTEDGKLFGWGYSADGRIGNL 207
           GL  D   T    P  V  L     + V+     GHALA   DG ++ WG +  G++GN 
Sbjct: 475 GLFADGTSTSRSTPGPVPGLTSITALSVAPNAATGHALAVRVDGTVWAWGDNTSGQVGNG 534

Query: 208 GKALESSPLD----SNIDRSSESDQEISSSTIEKAQKLVSEGMEK-------EKYMPIIW 256
            K  + +P+     +N+   + +   + S  + +   + + G  +        +   +I 
Sbjct: 535 TKLRQLAPIQVPDLTNV--VAVATGSMHSFALRQDGTVWAWGDNQFGQLGDGTRLGRLI- 591

Query: 257 EPFLVEGV-EVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFHPV 315
            PF V G+  VV IA G  H+L L  +G + + G N +GQLG +       P       +
Sbjct: 592 -PFQVPGLTNVVAIASGAFHTLALRADGTVWAWGYNWHGQLG-DGSTSSFRPTPARVEGL 649

Query: 316 S----ISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQL--GRMGPDNVPLVVEGLE 369
           +    +++G  H+LA+   R+         + +WG N S QL  G + P +VP  V G++
Sbjct: 650 TDVSALAAGDWHTLAL---RTDGT------VWAWGRNGSGQLADGTVEPRSVPTQVTGVK 700

Query: 370 GES 372
           G +
Sbjct: 701 GRA 703



 Score = 57.8 bits (138), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 43/112 (38%), Positives = 64/112 (57%), Gaps = 8/112 (7%)

Query: 56  PTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEG 115
           P RV GL +DV++++AG +H+LA+  +G VWAWGRN   QL  G +E R+    P +V G
Sbjct: 643 PARVEGL-TDVSALAAGDWHTLALRTDGTVWAWGRNGSGQLADGTVEPRSV---PTQVTG 698

Query: 116 LDQVNVCAAFASGVVSS-AIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRV 166
           +    V  A ++G  +S A   DG+   WG +   ++G G     A  P+RV
Sbjct: 699 VKGRAV--ALSAGADNSLARLADGTALGWGSNAFSKIGDGVSTVHA-APTRV 747



 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 63/225 (28%), Positives = 93/225 (41%), Gaps = 53/225 (23%)

Query: 131 SSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTED 190
           S A+   G+LW WG +  GQLG G      + P RV  L  + +  V+ G  H+LA   D
Sbjct: 51  SLAVDAHGALWAWGYNDFGQLGDGT-ANAHLTPIRVPGL--QDVEAVANGSLHSLALRRD 107

Query: 191 GKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEK 250
           G ++ WG   D + G LG                  +  ++ +T               +
Sbjct: 108 GTVWTWG---DNQFGQLGTG----------------EPWVTHAT--------------PQ 134

Query: 251 YMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDI 310
           ++P +          V  IA   DHSL L R+G +   G+N YGQLG     + + P  +
Sbjct: 135 HLPSL--------TNVAAIAASEDHSLALRRDGTVWVWGNNRYGQLGGAGNVLLLEPTHL 186

Query: 311 NFHPVSISSGLGHSLAICEVRSSNVTGGARGIV-SWGWNRSSQLG 354
                   +GL    AI    S  +   A G V +WG N++ QLG
Sbjct: 187 --------AGLTDIAAIATSPSHRLALRADGTVWAWGSNQTGQLG 223


>gi|194864811|ref|XP_001971119.1| GG14780 [Drosophila erecta]
 gi|190652902|gb|EDV50145.1| GG14780 [Drosophila erecta]
          Length = 1058

 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 79/293 (26%), Positives = 124/293 (42%), Gaps = 54/293 (18%)

Query: 24  ASGTAVVSFGDGSQGALGLPTSLTGVGGDAYE----PTRVPGLP-SDVTSVSAGHYHSLA 78
           ASG  +  +G  S G LGL       GG   E    P+++P  P + V  V+ GH H+L 
Sbjct: 2   ASGKELYCWGSTSHGQLGL-------GGIEDEQILTPSQIPWTPDTAVEQVACGHRHTLF 54

Query: 79  VTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDG 138
           +T NG V+A G N+  QLG      R     P  +  L    +         S A+ D G
Sbjct: 55  LTANGKVYACGSNDHSQLGHDLPTKR-----PLLIPELQDYVIIQISCGSRHSLALSDWG 109

Query: 139 SLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGY 198
            +  WG +  GQLG   D     +P  V  L  + +V+++ G  H+LA T  G+L+ WG 
Sbjct: 110 QVLSWGDNDCGQLGHATDKEIMQLPKVVRQLVSKTVVQIACGNNHSLALTSCGELYSWGS 169

Query: 199 SADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEP 258
           +  G++G       +SP D      +  +  +  +T+                       
Sbjct: 170 NIYGQLG------VNSPKD-----LTHCNYPLRLTTL----------------------- 195

Query: 259 FLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDIN 311
               G+ +  IACG +HS ++ ++G +   G N  GQLG   +    +P  + 
Sbjct: 196 ---LGIPLAAIACGGNHSFLISKSGAVFGWGRNNCGQLGLNDETNRAYPTQLK 245



 Score = 65.5 bits (158), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 76/281 (27%), Positives = 117/281 (41%), Gaps = 67/281 (23%)

Query: 85  VWAWGRNNEVQLGRGALE-------SRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDD 137
           ++ WG  +  QLG G +E       S+  W     VE +     C    +  +++    +
Sbjct: 7   LYCWGSTSHGQLGLGGIEDEQILTPSQIPWTPDTAVEQV----ACGHRHTLFLTA----N 58

Query: 138 GSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWG 197
           G ++  G +   QLG   D+     P  +  L    I+++S G  H+LA ++ G++  WG
Sbjct: 59  GKVYACGSNDHSQLG--HDLPTK-RPLLIPELQDYVIIQISCGSRHSLALSDWGQVLSWG 115

Query: 198 YSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWE 257
              D   G LG A               +D+EI      +  K+V + + K         
Sbjct: 116 ---DNDCGQLGHA---------------TDKEIM-----QLPKVVRQLVSKT-------- 144

Query: 258 PFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINF--HPV 315
                   VV IACG +HSL L   G L S GSN+YGQLG         P D+    +P+
Sbjct: 145 --------VVQIACGNNHSLALTSCGELYSWGSNIYGQLGVNS------PKDLTHCNYPL 190

Query: 316 SISSGLGHSLA--ICEVRSSNVTGGARGIVSWGWNRSSQLG 354
            +++ LG  LA   C    S +   +  +  WG N   QLG
Sbjct: 191 RLTTLLGIPLAAIACGGNHSFLISKSGAVFGWGRNNCGQLG 231



 Score = 64.7 bits (156), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 55/179 (30%), Positives = 89/179 (49%), Gaps = 6/179 (3%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSD-VTSVSAGHYHSLAVTNNGAVWA 87
           V+S+GD   G LG  T    +      P  V  L S  V  ++ G+ HSLA+T+ G +++
Sbjct: 111 VLSWGDNDCGQLGHATDKEIMQL----PKVVRQLVSKTVVQIACGNNHSLALTSCGELYS 166

Query: 88  WGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSK 147
           WG N   QLG  + +     N P R+  L  + + A    G  S  I   G+++ WG++ 
Sbjct: 167 WGSNIYGQLGVNSPKDLTHCNYPLRLTTLLGIPLAAIACGGNHSFLISKSGAVFGWGRNN 226

Query: 148 RGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGN 206
            GQLGL  D T    P++++ L    +  V+ G   ++  T +G +F  G  A G++G+
Sbjct: 227 CGQLGLN-DETNRAYPTQLKTLRTLGVRFVACGDEFSVFLTNEGGVFTCGAGAYGQLGH 284


>gi|428172054|gb|EKX40966.1| hypothetical protein GUITHDRAFT_46944, partial [Guillardia theta
           CCMP2712]
          Length = 355

 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 84/336 (25%), Positives = 141/336 (41%), Gaps = 59/336 (17%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTS-VSAGHYHSLAVTNNGAVWA 87
           V ++G G +G LG       V     EP  VP + +  +S V+ G  H++ VT+NG ++ 
Sbjct: 57  VYTWGRGWEGQLGHDV----VTEIELEPHIVPKMENRGSSAVACGRNHTVVVTDNGLIYT 112

Query: 88  WGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSS-AIGDDGSLWVWGKS 146
           WG N   QLG G L+S    N P  ++    +    + A G   + AI  +G++W WG++
Sbjct: 113 WGENKAGQLGTGDLKSS---NSPVLIDSALNLPSVLSIACGEFHTVAICIEGTIWSWGRN 169

Query: 147 KRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGN 206
           + GQLG G   T    P++V  +A +  ++ + G  H L  T+  K++ WG +A G++G 
Sbjct: 170 QCGQLGHGNTKT-CYFPTQVVGMAKKICIRAACGGQHTLVLTDANKIYAWGSNAYGQLG- 227

Query: 207 LGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVE- 265
                        ++RS ++                            + +P +V+ +  
Sbjct: 228 -------------LNRSDKA----------------------------VLQPDIVDHLRR 246

Query: 266 --VVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDI----NFHPVSISS 319
                + CG+ HS+ L +N  + + G N  GQLG         P  +    +     I+ 
Sbjct: 247 SGACHVLCGYSHSMALMKNEQIYTWGRNDCGQLGLGHYTHSPVPELVTALRSVRVQQIAC 306

Query: 320 GLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGR 355
           G  H +A               + SWG     QLG 
Sbjct: 307 GYDHCVAFVADEVEPGMPPLEHVYSWGRGEEGQLGH 342



 Score = 80.5 bits (197), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 85/337 (25%), Positives = 133/337 (39%), Gaps = 68/337 (20%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLP-----SDVTSVSAGHYHSLAVTNNG 83
           V S+G    G LGL     G   +   PT +  L       +V S+ AG  HS  +  +G
Sbjct: 1   VYSWGKNKYGQLGL-----GHTNNVPLPTGILSLSDPLNRKNVRSIGAGKSHSAVIAEDG 55

Query: 84  AVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVW 143
            V+ WGR  E QLG   +       +P  V  ++     A       +  + D+G ++ W
Sbjct: 56  DVYTWGRGWEGQLGHDVVTEIEL--EPHIVPKMENRGSSAVACGRNHTVVVTDNGLIYTW 113

Query: 144 GKSKRGQLGLGKDITEAIVPSRVE-ALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADG 202
           G++K GQLG G D+  +  P  ++ AL    ++ ++ G  H +A   +G ++ WG +  G
Sbjct: 114 GENKAGQLGTG-DLKSSNSPVLIDSALNLPSVLSIACGEFHTVAICIEGTIWSWGRNQCG 172

Query: 203 RIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVE 262
           ++G+                                      G  K  Y P   +   + 
Sbjct: 173 QLGH--------------------------------------GNTKTCYFPT--QVVGMA 192

Query: 263 GVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFH-----PVSI 317
               +  ACG  H+LVL     + + GSN YGQLG  + D  +   DI  H        +
Sbjct: 193 KKICIRAACGGQHTLVLTDANKIYAWGSNAYGQLGLNRSDKAVLQPDIVDHLRRSGACHV 252

Query: 318 SSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLG 354
             G  HS+A+ +            I +WG N   QLG
Sbjct: 253 LCGYSHSMALMKNEQ---------IYTWGRNDCGQLG 280


>gi|402869932|ref|XP_003898997.1| PREDICTED: LOW QUALITY PROTEIN: E3 ISG15--protein ligase HERC5
           [Papio anubis]
          Length = 1023

 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 71/230 (30%), Positives = 112/230 (48%), Gaps = 24/230 (10%)

Query: 24  ASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVP-------GLPSDVTSVSAGHYHS 76
           + G  + ++G    G LG+        G  +  T  P       G+P  +  +SAG  HS
Sbjct: 153 SKGGELFAWGQNLHGQLGV--------GRKFPSTTTPQIVEHLAGVP--LAQISAGEAHS 202

Query: 77  LAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGD 136
           +A++ +G V++WG+N   QLG G  ES+   + P  +E LD   V      G  S+ +  
Sbjct: 203 MALSMSGNVYSWGKNEFGQLGLGHTESK---DSPSLIEALDNQKVEFLACGGSHSALLTQ 259

Query: 137 DGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTED-GKLFG 195
           DG L+ +G  K GQLG      E + P  V  L G ++ +++ G  H LA   D GK+F 
Sbjct: 260 DGLLFTFGAGKHGQLGHNSTQNE-LRPCLVAELVGNRVTQIACGRWHTLAYVSDLGKVFS 318

Query: 196 WGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEG 245
           +G   DG++GN G   +  PL   +  SS  + ++ S T EK   +++ G
Sbjct: 319 FGSGKDGQLGNGGTLDQLIPLPVKV--SSSEELKLESHTSEKELIMIAGG 366



 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 81/281 (28%), Positives = 121/281 (43%), Gaps = 47/281 (16%)

Query: 66  VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAF 125
           +  ++ G YHSLA++  G ++AWG+N   QLG G      T   P+ VE L  V +    
Sbjct: 139 IIQITCGDYHSLALSKGGELFAWGQNLHGQLGVGRKFPSTT--TPQIVEHLAGVPLAQIS 196

Query: 126 ASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHAL 185
           A    S A+   G+++ WGK++ GQLGLG   ++   PS +EAL  +K+  ++ G  H+ 
Sbjct: 197 AGEAHSMALSMSGNVYSWGKNEFGQLGLGHTESKD-SPSLIEALDNQKVEFLACGGSHSA 255

Query: 186 AQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEG 245
             T+DG LF +G    G++G+     E  P                         LV+E 
Sbjct: 256 LLTQDGLLFTFGAGKHGQLGHNSTQNELRPC------------------------LVAE- 290

Query: 246 MEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRN-GVLLSCGSNVYGQLGREKQDMG 304
                          + G  V  IACG  H+L    + G + S GS   GQLG       
Sbjct: 291 ---------------LVGNRVTQIACGRWHTLAYVSDLGKVFSFGSGKDGQLGNGGTLDQ 335

Query: 305 MFPVDINFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSW 345
           + P+ +    VS S  L       E     + GG + I+ W
Sbjct: 336 LIPLPVK---VSSSEELKLESHTSEKELIMIAGGNQSILLW 373



 Score = 44.3 bits (103), Expect = 0.091,   Method: Compositional matrix adjust.
 Identities = 35/120 (29%), Positives = 61/120 (50%), Gaps = 16/120 (13%)

Query: 260 LVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFH----PV 315
           +++  +++ I CG  HSL L + G L + G N++GQLG  ++        I  H    P+
Sbjct: 133 ILQEKKIIQITCGDYHSLALSKGGELFAWGQNLHGQLGVGRKFPSTTTPQIVEHLAGVPL 192

Query: 316 S-ISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQ--LGRMGPDNVPLVVEGLEGES 372
           + IS+G  HS+A+      +++G    + SWG N   Q  LG     + P ++E L+ + 
Sbjct: 193 AQISAGEAHSMAL------SMSG---NVYSWGKNEFGQLGLGHTESKDSPSLIEALDNQK 243



 Score = 43.5 bits (101), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 39/146 (26%), Positives = 71/146 (48%), Gaps = 19/146 (13%)

Query: 169 LAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDR------ 222
           L  +KI++++ G  H+LA ++ G+LF WG +  G++G +G+   S+     ++       
Sbjct: 134 LQEKKIIQITCGDYHSLALSKGGELFAWGQNLHGQLG-VGRKFPSTTTPQIVEHLAGVPL 192

Query: 223 SSESDQEISSSTIEKAQKLVS----------EGMEKEKYMPIIWEPFLVEGVEVVDIACG 272
           +  S  E  S  +  +  + S           G  + K  P + E    + VE   +ACG
Sbjct: 193 AQISAGEAHSMALSMSGNVYSWGKNEFGQLGLGHTESKDSPSLIEALDNQKVEF--LACG 250

Query: 273 FDHSLVLGRNGVLLSCGSNVYGQLGR 298
             HS +L ++G+L + G+  +GQLG 
Sbjct: 251 GSHSALLTQDGLLFTFGAGKHGQLGH 276


>gi|62898714|dbj|BAD97211.1| retinitis pigmentosa GTPase regulator variant [Homo sapiens]
          Length = 815

 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 79/267 (29%), Positives = 124/267 (46%), Gaps = 51/267 (19%)

Query: 32  FGDGSQGALGLPTSLTGVGGDAYEPTRVPGL-PSDVTSVSAGHYHSLAVTNNGAVWAWGR 90
           FG  + G LGL     G      +PT V  L P  V   + G  H+L  T  G V+A G 
Sbjct: 59  FGSNNWGQLGL-----GSKSAISKPTCVKALKPEKVKLAACGRNHTLVSTEGGNVYATGG 113

Query: 91  NNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQ 150
           NNE QLG G  E R T++         ++   +A ++   S+A+ +DG L++WG +  GQ
Sbjct: 114 NNEGQLGLGDTEERNTFHVISFFTSEHKIKQLSAGSN--TSAALTEDGRLFMWGDNSEGQ 171

Query: 151 LGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKA 210
           +GL K+++   VP +V    G+ +  +S G+ H+   T DG+L+ +G   +G++G   + 
Sbjct: 172 IGL-KNVSNVCVPQQV--TIGKPVSWISCGYYHSAFVTTDGELYVFGEPENGKLGLPNQL 228

Query: 211 LESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIA 270
           L +                       +  +LVSE  EK                 V+ +A
Sbjct: 229 LGN----------------------HRTPQLVSEIPEK-----------------VIQVA 249

Query: 271 CGFDHSLVLGRNGVLLSCGSNVYGQLG 297
           CG +H++VL  N V  + G   +GQLG
Sbjct: 250 CGGEHTVVLTENAV-YTFGLGQFGQLG 275



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 66/239 (27%), Positives = 101/239 (42%), Gaps = 51/239 (21%)

Query: 69  VSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGL--DQVNVCAAFA 126
           +S G  HS  VT N  ++ +G NN  QLG G   S++  + P  V+ L  ++V + A   
Sbjct: 40  LSCGDEHSAVVTGNNKLYMFGSNNWGQLGLG---SKSAISKPTCVKALKPEKVKLAACGR 96

Query: 127 SGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGE-KIVKVSFGWGHAL 185
           +  + S  G  G+++  G +  GQLGLG D  E      +     E KI ++S G   + 
Sbjct: 97  NHTLVSTEG--GNVYATGGNNEGQLGLG-DTEERNTFHVISFFTSEHKIKQLSAGSNTSA 153

Query: 186 AQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEG 245
           A TEDG+LF WG +++G+IG    +    P    I +                       
Sbjct: 154 ALTEDGRLFMWGDNSEGQIGLKNVSNVCVPQQVTIGK----------------------- 190

Query: 246 MEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMG 304
                  P+ W            I+CG+ HS  +  +G L   G    G+LG   Q +G
Sbjct: 191 -------PVSW------------ISCGYYHSAFVTTDGELYVFGEPENGKLGLPNQLLG 230



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 53/184 (28%), Positives = 90/184 (48%), Gaps = 18/184 (9%)

Query: 33  GDGSQGALGLPTSLTGVGGDAYEPTRVP-GLPSDVTSVSAGHYHSLAVTNNGAVWAWGRN 91
           GD S+G +GL         +   P +V  G P  V+ +S G+YHS  VT +G ++ +G  
Sbjct: 165 GDNSEGQIGLKNV-----SNVCVPQQVTIGKP--VSWISCGYYHSAFVTTDGELYVFG-- 215

Query: 92  NEVQLGRGALESRATWND--PKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRG 149
            E + G+  L ++   N   P+ V  + +  +    A G   + +  + +++ +G  + G
Sbjct: 216 -EPENGKLGLPNQLLGNHRTPQLVSEIPEKVI--QVACGGEHTVVLTENAVYTFGLGQFG 272

Query: 150 QLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGK 209
           QLGLG  + E   P  +E +  + I  +S G  H    T+ G ++ +G   DGR G LG 
Sbjct: 273 QLGLGTFLFETSEPKVIENIRDQTISYISCGENHTALITDIGLMYTFG---DGRHGKLGL 329

Query: 210 ALES 213
            LE+
Sbjct: 330 GLEN 333


>gi|301786789|ref|XP_002928812.1| PREDICTED: secretion-regulating guanine nucleotide exchange
           factor-like [Ailuropoda melanoleuca]
          Length = 468

 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 94/313 (30%), Positives = 136/313 (43%), Gaps = 43/313 (13%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAW 88
           V+S G  S G LG+P            P  +  L   V  ++AG  H+LA T +G V+ W
Sbjct: 127 VLSCGSNSFGQLGVPHGPR----RCMVPQAIELLSEKVVCIAAGLRHALAATASGIVFQW 182

Query: 89  GR---NNEVQLGRG-ALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWG 144
           G    ++  +L  G  L    T  +P RV GL+        A    S+++ D G L+VWG
Sbjct: 183 GTGLASSGRRLCPGQTLPPFLTAKEPSRVTGLENSKATCVLAGSDHSASLTDAGELYVWG 242

Query: 145 KSKRGQLGLGKDITEAIVPSRVEA--LAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADG 202
            +K GQL          +P ++EA     EK+  V  GW H +AQTE GK+F WG  AD 
Sbjct: 243 SNKHGQLASLAAFLP--MPQKIEAHCFQNEKVTSVWSGWTHLVAQTETGKVFTWG-RAD- 298

Query: 203 RIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVE 262
             G LG+ LE           S  D ++ +      Q         +K MP         
Sbjct: 299 -YGQLGRKLE-----------SHEDWKLQN------QDPSRPCSGPQKSMPSSLHCL--- 337

Query: 263 GVEVVDIACGFDHSL-VLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFHPVS----I 317
                +++CG +H+L V+G  G   S G N +G  G   +     P  +     S    +
Sbjct: 338 -TGAAEVSCGSEHNLAVIG--GTCYSWGWNEHGMCGDGSEADIWAPKPVQALRSSLGLLV 394

Query: 318 SSGLGHSLAICEV 330
             G GHSLA+C++
Sbjct: 395 GCGAGHSLALCQL 407



 Score = 68.9 bits (167), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 89/358 (24%), Positives = 143/358 (39%), Gaps = 47/358 (13%)

Query: 32  FGDGSQGALGLPTSLTGVGGDAYEPTRVPGL--PSDVTSVSAGHYHSLAVTNNGAVWAWG 89
           FG  S G LGL     G   D + P ++     P  +  ++ G  HS  VT++G ++  G
Sbjct: 25  FGANSYGQLGL-----GHKEDVFLPQQLNDFCKPECIRRITGGGGHSAVVTDDGGLFVCG 79

Query: 90  RNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRG 149
            N + QLG G  E    +   + +       V   +   ++   + + G +   G +  G
Sbjct: 80  LNKDGQLGLGHTEDVLYFTACRSLLDCPIQQVACGWDFTII---LTESGQVLSCGSNSFG 136

Query: 150 QLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGW--GYSADGRIGNL 207
           QLG+       +VP  +E L+ EK+V ++ G  HALA T  G +F W  G ++ GR    
Sbjct: 137 QLGVPHGPRRCMVPQAIELLS-EKVVCIAAGLRHALAATASGIVFQWGTGLASSGRRLCP 195

Query: 208 GKALESSPLDSNIDRSSESDQEISSST-----------IEKAQKLVSEGMEKEKY----- 251
           G+ L   P  +  + S  +  E S +T           +  A +L   G  K        
Sbjct: 196 GQTL--PPFLTAKEPSRVTGLENSKATCVLAGSDHSASLTDAGELYVWGSNKHGQLASLA 253

Query: 252 ----MPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFP 307
               MP   E    +  +V  +  G+ H +     G + + G   YGQLGR+ +    + 
Sbjct: 254 AFLPMPQKIEAHCFQNEKVTSVWSGWTHLVAQTETGKVFTWGRADYGQLGRKLESHEDWK 313

Query: 308 VDINFHPVSISSGLGHSLAI---CEVRSSNVTGGAR--------GIVSWGWNRSSQLG 354
           +  N  P    SG   S+     C   ++ V+ G+            SWGWN     G
Sbjct: 314 LQ-NQDPSRPCSGPQKSMPSSLHCLTGAAEVSCGSEHNLAVIGGTCYSWGWNEHGMCG 370



 Score = 54.7 bits (130), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 60/224 (26%), Positives = 91/224 (40%), Gaps = 61/224 (27%)

Query: 143 WGKSKRGQLGLGKDITEAIVPSRVEALAG-EKIVKVSFGWGHALAQTEDGKLFGWGYSAD 201
           +G +  GQLGLG    +  +P ++      E I +++ G GH+   T+DG LF  G + D
Sbjct: 25  FGANSYGQLGLGHK-EDVFLPQQLNDFCKPECIRRITGGGGHSAVVTDDGGLFVCGLNKD 83

Query: 202 GR--IGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPF 259
           G+  +G+    L  +   S +D                                      
Sbjct: 84  GQLGLGHTEDVLYFTACRSLLD-------------------------------------- 105

Query: 260 LVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLG-REKQDMGMFPVDINF---HPV 315
                 +  +ACG+D +++L  +G +LSCGSN +GQLG        M P  I       V
Sbjct: 106 ----CPIQQVACGWDFTIILTESGQVLSCGSNSFGQLGVPHGPRRCMVPQAIELLSEKVV 161

Query: 316 SISSGLGHSLAICEVRSSNVTGGARGIV-SWGWNRSSQLGRMGP 358
            I++GL H+LA            A GIV  WG   +S   R+ P
Sbjct: 162 CIAAGLRHALA----------ATASGIVFQWGTGLASSGRRLCP 195


>gi|74200231|dbj|BAE22920.1| unnamed protein product [Mus musculus]
          Length = 681

 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 83/310 (26%), Positives = 149/310 (48%), Gaps = 29/310 (9%)

Query: 32  FGDGSQGALGLPTSLTGVGGDAYEPTRVPGL-PSDVTSVSAGHYHSLAVTNNGAVWAWGR 90
           FG  + G LGL     G      +PT +  L P  V   + G  H+L  T+ G V+A G 
Sbjct: 97  FGSNNWGQLGL-----GSKAAIIKPTCIKALKPEKVKLAACGRNHTLVSTDTGGVYAAGG 151

Query: 91  NNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQ 150
           NNE QLG G  + R T++        D +   +A A+   S+A+ +DG L++WG +  GQ
Sbjct: 152 NNEGQLGLGDTDDRDTFHQIVFFTPADTIKQLSAGAN--TSAALTEDGKLFMWGDNSEGQ 209

Query: 151 LGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKA 210
           +GL +D +   +P   E   G+ I  +S G+ H+   T DG+L+ +G   +G++G   + 
Sbjct: 210 IGL-EDKSNVCIPH--EVTVGKPISWISCGYYHSAFVTMDGELYTFGEPENGKLGLPNEL 266

Query: 211 LESSPLDSNIDRSSESDQEISS---STIEKAQKLV-SEGMEKE------KYMPIIWEPFL 260
           L +      +    E   +++     T+   +K+V + G+ +        ++    EP +
Sbjct: 267 LMNHRSPQRVLGIPERVIQVACGGGHTVVLTEKVVYAFGLGQFGQLGLGTFLFETSEPKI 326

Query: 261 VEGV---EVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFHPVSI 317
           +E +   ++  I+CG +H+ ++   G+L + G   +G+LG     +GM      F P   
Sbjct: 327 IERIKDQKICHISCGENHTALMTELGLLYTFGDGRHGKLG-----LGMENFTNQFFPTLC 381

Query: 318 SSGLGHSLAI 327
           S+ L  ++ +
Sbjct: 382 SNFLRFAVQL 391



 Score = 65.5 bits (158), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 72/295 (24%), Positives = 115/295 (38%), Gaps = 68/295 (23%)

Query: 69  VSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASG 128
           +S G  H+  VT N  ++ +G NN  QLG G   S+A    P  ++ L    V  A    
Sbjct: 78  LSCGDEHTAIVTGNNKLYMFGSNNWGQLGLG---SKAAIIKPTCIKALKPEKVKLAACGR 134

Query: 129 VVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQT 188
             +    D G ++  G +  GQLGLG           V     + I ++S G   + A T
Sbjct: 135 NHTLVSTDTGGVYAAGGNNEGQLGLGDTDDRDTFHQIVFFTPADTIKQLSAGANTSAALT 194

Query: 189 EDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEK 248
           EDGKLF WG +++G+IG   K+    P +  + +                          
Sbjct: 195 EDGKLFMWGDNSEGQIGLEDKSNVCIPHEVTVGK-------------------------- 228

Query: 249 EKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLG---------RE 299
               PI W            I+CG+ HS  +  +G L + G    G+LG         R 
Sbjct: 229 ----PISW------------ISCGYYHSAFVTMDGELYTFGEPENGKLGLPNELLMNHRS 272

Query: 300 KQDMGMFPVDINFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLG 354
            Q +   P  +    + ++ G GH++ + E          + + ++G  +  QLG
Sbjct: 273 PQRVLGIPERV----IQVACGGGHTVVLTE----------KVVYAFGLGQFGQLG 313



 Score = 57.8 bits (138), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 42/158 (26%), Positives = 72/158 (45%), Gaps = 7/158 (4%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAW 88
           + +FG+   G LGLP  L     +   P RV G+P  V  V+ G  H++ +T    V+A+
Sbjct: 249 LYTFGEPENGKLGLPNELL---MNHRSPQRVLGIPERVIQVACGGGHTVVLTEK-VVYAF 304

Query: 89  GRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKR 148
           G     QLG G      +  +PK +E +    +C        ++ + + G L+ +G  + 
Sbjct: 305 GLGQFGQLGLGTFLFETS--EPKIIERIKDQKICHISCGENHTALMTELGLLYTFGDGRH 362

Query: 149 GQLGLG-KDITEAIVPSRVEALAGEKIVKVSFGWGHAL 185
           G+LGLG ++ T    P+         +  ++ G  H L
Sbjct: 363 GKLGLGMENFTNQFFPTLCSNFLRFAVQLIACGGCHML 400


>gi|392423407|ref|YP_006464398.1| RCC1 domain-containing protein, alpha-tubulin suppressor
           [Desulfosporosinus acidiphilus SJ4]
 gi|391357873|gb|AFM43571.1| RCC1 domain-containing protein, alpha-tubulin suppressor
           [Desulfosporosinus acidiphilus SJ4]
          Length = 1910

 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 88/310 (28%), Positives = 135/310 (43%), Gaps = 63/310 (20%)

Query: 67  TSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFA 126
           ++++AG  H+LAV ++  VW+ G N   QLG  +  + +T   P +V GL    +    A
Sbjct: 334 STIAAGSGHTLAVRSDSTVWSAGSNTFGQLGNNSTANSST---PVQVSGLSS--IVGVSA 388

Query: 127 SGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALA 186
               S A+  DG ++VWG+   GQLG G   + +  P +V  L+   IV +S G  H +A
Sbjct: 389 GDSTSMALRSDGIVFVWGRGTEGQLGNGT-YSNSSTPVQVPGLS--NIVSISCGGYHCMA 445

Query: 187 QTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGM 246
             +DG +F WGY  +G +GN   +  ++PL                    + Q L     
Sbjct: 446 LRKDGAVFVWGYGYNGELGNNTYSCSATPL--------------------QVQNL----- 480

Query: 247 EKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMF 306
                             ++  I  G  H L +  +G   S G N YGQLG         
Sbjct: 481 -----------------PKITCIGAGAYHCLAVAYDGTCWSWGYNNYGQLGDGTTTNRSI 523

Query: 307 PVDI--NFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGR--MGPDNVP 362
           PV +    +   +S G+ HS+    ++S++  G   G   WGWN   QLG+   G   VP
Sbjct: 524 PVQVIGITNAKFVSGGMYHSV----LQSTD--GSFYG---WGWNAYGQLGKGDNGDSYVP 574

Query: 363 LVVEGLEGES 372
             + G  G+S
Sbjct: 575 AGMVGWSGQS 584



 Score = 78.6 bits (192), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 84/301 (27%), Positives = 127/301 (42%), Gaps = 59/301 (19%)

Query: 55  EPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVE 114
            P +V GL S +  VSAG   S+A+ ++G V+ WGR  E QLG G   + +T   P +V 
Sbjct: 373 TPVQVSGL-SSIVGVSAGDSTSMALRSDGIVFVWGRGTEGQLGNGTYSNSST---PVQVP 428

Query: 115 GLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKI 174
           GL   N+ +    G    A+  DG+++VWG    G+LG     + +  P +V+ L   KI
Sbjct: 429 GLS--NIVSISCGGYHCMALRKDGAVFVWGYGYNGELG-NNTYSCSATPLQVQNL--PKI 483

Query: 175 VKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSST 234
             +  G  H LA   DG  + WGY+  G++G+      S P+           Q I    
Sbjct: 484 TCIGAGAYHCLAVAYDGTCWSWGYNNYGQLGDGTTTNRSIPV-----------QVI---- 528

Query: 235 IEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYG 294
                     G+   K+                 ++ G  HS++   +G     G N YG
Sbjct: 529 ----------GITNAKF-----------------VSGGMYHSVLQSTDGSFYGWGWNAYG 561

Query: 295 QLGREKQDMGMFPVDINFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLG 354
           QLG  K D G      ++ P  +    G S+  C   S+ + G    + S G+    QLG
Sbjct: 562 QLG--KGDNGD-----SYVPAGMVGWSGQSIVACG-YSTTIIGNDNTVYSTGYGGDGQLG 613

Query: 355 R 355
            
Sbjct: 614 N 614



 Score = 75.5 bits (184), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 61/181 (33%), Positives = 87/181 (48%), Gaps = 19/181 (10%)

Query: 28  AVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWA 87
           AV  +G G  G LG  T           P +V  LP  +T + AG YH LAV  +G  W+
Sbjct: 451 AVFVWGYGYNGELGNNTYSCSA-----TPLQVQNLP-KITCIGAGAYHCLAVAYDGTCWS 504

Query: 88  WGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAI--GDDGSLWVWGK 145
           WG NN  QLG G   +R+    P +V G+      A F SG +  ++    DGS + WG 
Sbjct: 505 WGYNNYGQLGDGTTTNRSI---PVQVIGITN----AKFVSGGMYHSVLQSTDGSFYGWGW 557

Query: 146 SKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIG 205
           +  GQLG G D  ++ VP+ +   +G+ IV   +          D  ++  GY  DG++G
Sbjct: 558 NAYGQLGKG-DNGDSYVPAGMVGWSGQSIVACGY---STTIIGNDNTVYSTGYGGDGQLG 613

Query: 206 N 206
           N
Sbjct: 614 N 614



 Score = 47.0 bits (110), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 33/121 (27%), Positives = 53/121 (43%), Gaps = 5/121 (4%)

Query: 75  HSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAI 134
           +S+ + ++G+VWAWG N E QLG         W   +   G+  +   A    G   +  
Sbjct: 697 YSMLLKSDGSVWAWGNNGEYQLGIAGSNGTDIWTPTEVTTGMVDI---AMPGGGYTYNTY 753

Query: 135 G--DDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGK 192
           G   DG++W WG+     +G G++ T       V+  A   I  +S G G      +DG 
Sbjct: 754 GVKSDGTVWAWGQCSEIYVGWGRNQTFEGEGPPVQVTALNNIASISTGNGALYFVKKDGT 813

Query: 193 L 193
           +
Sbjct: 814 V 814



 Score = 43.1 bits (100), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 43/183 (23%), Positives = 77/183 (42%), Gaps = 40/183 (21%)

Query: 50  GGDAYEPTRVPGLPSDVTSVSAGH-YHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWN 108
           G D + PT V     D+     G+ Y++  V ++G VWAWG+ +E+ +G G  ++     
Sbjct: 725 GTDIWTPTEVTTGMVDIAMPGGGYTYNTYGVKSDGTVWAWGQCSEIYVGWGRNQTFEGEG 784

Query: 109 DPKRVEGLDQV------------------------NVCAAFASGVVSSA--------IGD 136
            P +V  L+ +                        NV    A+ + +S         +  
Sbjct: 785 PPVQVTALNNIASISTGNGALYFVKKDGTVCDINGNVIPGTANIIKASTSLYGMVTMLKS 844

Query: 137 DGSLWVWGKSKRGQLGLG--KDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLF 194
           DG++W +G    G  GLG     + A+   ++  L+G  I+ ++    + LA   DG ++
Sbjct: 845 DGTVWSYGTDSSGNGGLGGASPTSNAV---QIPGLSG--IIDIADNSNNVLALKSDGTVY 899

Query: 195 GWG 197
            WG
Sbjct: 900 HWG 902


>gi|6912330|ref|NP_036271.1| secretion-regulating guanine nucleotide exchange factor [Homo
           sapiens]
 gi|38257790|sp|Q9UGK8.2|SRGEF_HUMAN RecName: Full=Secretion-regulating guanine nucleotide exchange
           factor; AltName: Full=Deafness locus-associated putative
           guanine nucleotide exchange factor; Short=DelGEF;
           AltName: Full=Guanine nucleotide exchange factor-related
           protein
 gi|6434157|emb|CAB60832.1| deafness locus associated putative guanine nucleotide exchange
           factor [Homo sapiens]
 gi|41107524|gb|AAH65375.1| Secretion regulating guanine nucleotide exchange factor [Homo
           sapiens]
 gi|119588830|gb|EAW68424.1| secretion regulating guanine nucleotide exchange factor, isoform
           CRA_b [Homo sapiens]
          Length = 458

 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 90/313 (28%), Positives = 134/313 (42%), Gaps = 43/313 (13%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAW 88
           V+S G  S G LG+P            P  +      V  ++AG  H++A T +G V+ W
Sbjct: 122 VLSCGSNSFGQLGVPHGPR----RCVVPQAIELHKEKVVCIAAGLRHAVAATASGIVFQW 177

Query: 89  GRNNEVQLGRGALESRA-----TWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVW 143
           G       GR     +      T  +P RV GL+        A    S+++ D G ++VW
Sbjct: 178 G-TGLASCGRRLCPGQTLPLFFTAKEPSRVTGLENSKAMCVLAGSDHSASLTDAGEVYVW 236

Query: 144 GKSKRGQLGLGKDITEAIVPSRVEA--LAGEKIVKVSFGWGHALAQTEDGKLFGWGYSAD 201
           G +K GQL    +     VP ++EA     EK+  +  GW H +AQTE GK+F WG  AD
Sbjct: 237 GSNKHGQLA--NEAAFLPVPQKIEAHCFQNEKVTAIWSGWTHLVAQTETGKMFTWG-RAD 293

Query: 202 GRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLV 261
              G LG+ LE+                     +EK    +         MP    P  +
Sbjct: 294 --YGQLGRKLET----------------YEGWKLEKQDSFLP-CSRPPNSMPS--SPHCL 332

Query: 262 EGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQL--GREKQDMGMFPVD--INFHPVSI 317
            G    +++CG +H+L +   GV  S G N +G    G E       PV   ++   + +
Sbjct: 333 TG--ATEVSCGSEHNLAI-IGGVCYSWGWNEHGMCGDGTEANVWAPKPVQALLSSSGLLV 389

Query: 318 SSGLGHSLAICEV 330
             G GHSLA+C++
Sbjct: 390 GCGAGHSLALCQL 402



 Score = 65.5 bits (158), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 93/352 (26%), Positives = 140/352 (39%), Gaps = 64/352 (18%)

Query: 63  PSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVC 122
           P  V  ++ G  HS  VT+ G ++  G N + QLG G  E    +   K + G     V 
Sbjct: 48  PRSVRRITGGGGHSAVVTDGGDLFVCGLNKDGQLGLGHTEDIPYFTPCKSLFGCPIQQVA 107

Query: 123 AAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWG 182
             +   ++   + ++G +   G +  GQLG+       +VP  +E L  EK+V ++ G  
Sbjct: 108 CGWDFTIM---LTENGQVLSCGSNSFGQLGVPHGPRRCVVPQAIE-LHKEKVVCIAAGLR 163

Query: 183 HALAQTEDGKLFGW--GYSADGRIGNLGKALESSPLDSNIDRSS-----ESDQEIS---- 231
           HA+A T  G +F W  G ++ GR    G+ L   PL       S     E+ + +     
Sbjct: 164 HAVAATASGIVFQWGTGLASCGRRLCPGQTL---PLFFTAKEPSRVTGLENSKAMCVLAG 220

Query: 232 ---SSTIEKAQKLVSEGMEKE-------KYMPIIW--EPFLVEGVEVVDIACGFDHSLVL 279
              S+++  A ++   G  K         ++P+    E    +  +V  I  G+ H +  
Sbjct: 221 SDHSASLTDAGEVYVWGSNKHGQLANEAAFLPVPQKIEAHCFQNEKVTAIWSGWTHLVAQ 280

Query: 280 GRNGVLLSCGSNVYGQLGR----------EKQDMGMFPVD--INFHPVS---------IS 318
              G + + G   YGQLGR          EKQD    P     N  P S         +S
Sbjct: 281 TETGKMFTWGRADYGQLGRKLETYEGWKLEKQD-SFLPCSRPPNSMPSSPHCLTGATEVS 339

Query: 319 SGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPDNV--PLVVEGL 368
            G  H+LAI         GG     SWGWN     G     NV  P  V+ L
Sbjct: 340 CGSEHNLAI--------IGGV--CYSWGWNEHGMCGDGTEANVWAPKPVQAL 381



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 63/228 (27%), Positives = 97/228 (42%), Gaps = 58/228 (25%)

Query: 149 GQLGLGKDITEAIVPSRVEALAGEKIVK-VSFGWGHALAQTEDGKLFGWGYSADGRIGNL 207
           GQLGLG    + ++P ++      + V+ ++ G GH+   T+ G LF  G + DG++G L
Sbjct: 26  GQLGLGHK-EDVLLPQQLNDFCKPRSVRRITGGGGHSAVVTDGGDLFVCGLNKDGQLG-L 83

Query: 208 GKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVV 267
           G                   ++I   T  K+                      + G  + 
Sbjct: 84  GHT-----------------EDIPYFTPCKS----------------------LFGCPIQ 104

Query: 268 DIACGFDHSLVLGRNGVLLSCGSNVYGQLG-REKQDMGMFPVDINFHP---VSISSGLGH 323
            +ACG+D +++L  NG +LSCGSN +GQLG        + P  I  H    V I++GL H
Sbjct: 105 QVACGWDFTIMLTENGQVLSCGSNSFGQLGVPHGPRRCVVPQAIELHKEKVVCIAAGLRH 164

Query: 324 SLAICEVRSSNVTGGARGIV-SWGWNRSSQLGRMGP-DNVPLVVEGLE 369
           ++A            A GIV  WG   +S   R+ P   +PL     E
Sbjct: 165 AVA----------ATASGIVFQWGTGLASCGRRLCPGQTLPLFFTAKE 202


>gi|380792689|gb|AFE68220.1| RCC1 and BTB domain-containing protein 1, partial [Macaca mulatta]
          Length = 345

 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 54/162 (33%), Positives = 88/162 (54%), Gaps = 5/162 (3%)

Query: 62  LPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNV 121
           L   V  V+ G +HS+A+  +G V+AWG NN  Q+G G+  ++ T   P++V     +  
Sbjct: 126 LIKQVVEVACGSHHSMALAADGEVFAWGYNNCGQVGSGSTANQPT---PRKVTNCLHIKR 182

Query: 122 CAAFASGVVSS-AIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFG 180
               A G  SS A+ D+G ++ WG +  GQLGLG +  + + P RV AL    + ++  G
Sbjct: 183 VVGIACGQTSSMAVLDNGEVYGWGYNGNGQLGLGNNGNQ-LTPVRVAALHSVCVNQIVCG 241

Query: 181 WGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDR 222
           + H LA T++G L+ WG +  G++G   K    SP    +++
Sbjct: 242 YAHTLALTDEGLLYAWGANTYGQLGTGNKNNLLSPAHIMVEK 283



 Score = 77.0 bits (188), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 72/293 (24%), Positives = 114/293 (38%), Gaps = 67/293 (22%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLP-SDVTSVSAGH-YHSLAVTNNGAVW 86
           V  FG      LG     TG       P ++ GL    + S+S G   H L  T +G V+
Sbjct: 43  VFVFGLNYSNCLG-----TGDNQSTLVPKKLEGLSGKKIKSLSYGSGPHVLLSTEDGVVY 97

Query: 87  AWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVV---------SSAIGDD 137
           AWG N   QLG G              +G+  + VC       V         S A+  D
Sbjct: 98  AWGHNGYSQLGNGTTN-----------QGIAPIQVCTNLLIKQVVEVACGSHHSMALAAD 146

Query: 138 GSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWG 197
           G ++ WG +  GQ+G G    +         L  +++V ++ G   ++A  ++G+++GWG
Sbjct: 147 GEVFAWGYNNCGQVGSGSTANQPTPRKVTNCLHIKRVVGIACGQTSSMAVLDNGEVYGWG 206

Query: 198 YSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWE 257
           Y+ +G++G                                       G    +  P+   
Sbjct: 207 YNGNGQLG--------------------------------------LGNNGNQLTPV--R 226

Query: 258 PFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDI 310
              +  V V  I CG+ H+L L   G+L + G+N YGQLG   ++  + P  I
Sbjct: 227 VAALHSVCVNQIVCGYAHTLALTDEGLLYAWGANTYGQLGTGNKNNLLSPAHI 279



 Score = 65.5 bits (158), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 65/250 (26%), Positives = 110/250 (44%), Gaps = 35/250 (14%)

Query: 134 IGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWG-HALAQTEDGK 192
           + DD  ++V+G +    LG G D    +VP ++E L+G+KI  +S+G G H L  TEDG 
Sbjct: 37  VTDDDEVFVFGLNYSNCLGTG-DNQSTLVPKKLEGLSGKKIKSLSYGSGPHVLLSTEDGV 95

Query: 193 LFGWGYSADGRIGN----------------LGKALESSPLDSNIDRSSESDQEISSSTIE 236
           ++ WG++   ++GN                L K +      S+   +  +D E+ +    
Sbjct: 96  VYAWGHNGYSQLGNGTTNQGIAPIQVCTNLLIKQVVEVACGSHHSMALAADGEVFAWGYN 155

Query: 237 KAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQL 296
              ++ S     +     +     ++   VV IACG   S+ +  NG +   G N  GQL
Sbjct: 156 NCGQVGSGSTANQPTPRKVTNCLHIK--RVVGIACGQTSSMAVLDNGEVYGWGYNGNGQL 213

Query: 297 GREKQDMGMFPVDI-NFHPVSIS---SGLGHSLAICEVRSSNVTGGARGIV-SWGWNRSS 351
           G       + PV +   H V ++    G  H+LA+ +           G++ +WG N   
Sbjct: 214 GLGNNGNQLTPVRVAALHSVCVNQIVCGYAHTLALTD----------EGLLYAWGANTYG 263

Query: 352 QLGRMGPDNV 361
           QLG    +N+
Sbjct: 264 QLGTGNKNNL 273


>gi|330836205|ref|YP_004410846.1| chromosome condensation regulator RCC1 [Sphaerochaeta coccoides DSM
           17374]
 gi|329748108|gb|AEC01464.1| regulator of chromosome condensation RCC1 [Sphaerochaeta coccoides
           DSM 17374]
          Length = 376

 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 76/261 (29%), Positives = 126/261 (48%), Gaps = 27/261 (10%)

Query: 62  LPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNV 121
           + +DV SVSAG  H++ V  +G +WA GRN+  QLG G  + R+T   P RV   D  +V
Sbjct: 129 IMTDVASVSAGGDHTMIVKTDGTLWATGRNDFGQLGDGTRDGRST---PVRVM-TDVASV 184

Query: 122 CAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGW 181
            A +A  ++   +  +G+LWV G +  GQLG G        P ++       +  VS G 
Sbjct: 185 SAGYAHTMI---LKKNGTLWVTGWNNVGQLGDGT-WGYKFTPKQIMT----DVAAVSAGD 236

Query: 182 GHALAQTEDGKLFGWGYSADGRIGN-LGKALESSPLDSNIDRSSESDQEISSSTIEKAQK 240
            H +   +DG L+  G++ DG++G+   K  +++P+    D ++ S  +  +  ++K   
Sbjct: 237 RHTMILKKDGTLWATGFNLDGQLGDGTDKNHKNTPVRVMTDVAAVSAGDRHTMILKKDGT 296

Query: 241 LVSEGM-----------EKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCG 289
           L + G            E  K  P+        G  V  ++ G D+++++ +NG L + G
Sbjct: 297 LWATGYNGGGQLGDGTDEDHKSTPV---KVTSMGTNVASVSAGGDYTMIVKKNGTLWATG 353

Query: 290 SNVYGQLGREKQDMGMFPVDI 310
            N  GQLG       + PV I
Sbjct: 354 RNADGQLGVGDTTNRITPVKI 374



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 75/284 (26%), Positives = 134/284 (47%), Gaps = 29/284 (10%)

Query: 48  GVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATW 107
           G+G +  + T V  +P DV +VSAG  H++ + N+G +WA G+N   QLG GA + +A  
Sbjct: 66  GIGNNENKKTPVLVMP-DVAAVSAGESHTMILKNDGTLWATGKNFFGQLGDGATD-QADK 123

Query: 108 NDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVE 167
           N P ++      +V +  A G  +  +  DG+LW  G++  GQLG G     +  P RV 
Sbjct: 124 NTPVQI----MTDVASVSAGGDHTMIVKTDGTLWATGRNDFGQLGDGTRDGRS-TPVRVM 178

Query: 168 ALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESD 227
                 +  VS G+ H +   ++G L+  G++  G++G+     + +P     D ++ S 
Sbjct: 179 T----DVASVSAGYAHTMILKKNGTLWVTGWNNVGQLGDGTWGYKFTPKQIMTDVAAVSA 234

Query: 228 QEISSSTIEKAQKLVSEGM-----------EKEKYMPIIWEPFLVEGVEVVDIACGFDHS 276
            +  +  ++K   L + G            +  K  P+          +V  ++ G  H+
Sbjct: 235 GDRHTMILKKDGTLWATGFNLDGQLGDGTDKNHKNTPVRVM------TDVAAVSAGDRHT 288

Query: 277 LVLGRNGVLLSCGSNVYGQLGR-EKQDMGMFPVDINFHPVSISS 319
           ++L ++G L + G N  GQLG    +D    PV +     +++S
Sbjct: 289 MILKKDGTLWATGYNGGGQLGDGTDEDHKSTPVKVTSMGTNVAS 332



 Score = 75.9 bits (185), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 71/274 (25%), Positives = 127/274 (46%), Gaps = 29/274 (10%)

Query: 66  VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAF 125
           VT++SAG YH++ +  +G +WA G N    LG G        N+ K+   L   +V A  
Sbjct: 35  VTAISAGGYHTMILKKDGTLWATGSNYSGALGIGN-------NENKKTPVLVMPDVAAVS 87

Query: 126 ASGVVSSAIGDDGSLWVWGKSKRGQLGLG-KDITEAIVPSRVEALAGEKIVKVSFGWGHA 184
           A    +  + +DG+LW  GK+  GQLG G  D  +   P ++       +  VS G  H 
Sbjct: 88  AGESHTMILKNDGTLWATGKNFFGQLGDGATDQADKNTPVQIMT----DVASVSAGGDHT 143

Query: 185 LAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKL--- 241
           +    DG L+  G +  G++G+  +   S+P+    D +S S     +  ++K   L   
Sbjct: 144 MIVKTDGTLWATGRNDFGQLGDGTRDGRSTPVRVMTDVASVSAGYAHTMILKKNGTLWVT 203

Query: 242 -------VSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYG 294
                  + +G    K+ P   +  +    +V  ++ G  H+++L ++G L + G N+ G
Sbjct: 204 GWNNVGQLGDGTWGYKFTP---KQIM---TDVAAVSAGDRHTMILKKDGTLWATGFNLDG 257

Query: 295 QLGR-EKQDMGMFPVDINFHPVSISSGLGHSLAI 327
           QLG    ++    PV +     ++S+G  H++ +
Sbjct: 258 QLGDGTDKNHKNTPVRVMTDVAAVSAGDRHTMIL 291



 Score = 55.1 bits (131), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 55/234 (23%), Positives = 93/234 (39%), Gaps = 56/234 (23%)

Query: 121 VCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFG 180
           V A  A G  +  +  DG+LW  G +  G LG+G +  +     +   L    +  VS G
Sbjct: 35  VTAISAGGYHTMILKKDGTLWATGSNYSGALGIGNNENK-----KTPVLVMPDVAAVSAG 89

Query: 181 WGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQK 240
             H +    DG L+  G +  G++G+                   +DQ            
Sbjct: 90  ESHTMILKNDGTLWATGKNFFGQLGD-----------------GATDQA----------- 121

Query: 241 LVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREK 300
                 +K   + I+         +V  ++ G DH++++  +G L + G N +GQLG   
Sbjct: 122 ------DKNTPVQIM--------TDVASVSAGGDHTMIVKTDGTLWATGRNDFGQLGDGT 167

Query: 301 QDMGMFPVDINFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLG 354
           +D    PV +     S+S+G  H++ + +  +  VT         GWN   QLG
Sbjct: 168 RDGRSTPVRVMTDVASVSAGYAHTMILKKNGTLWVT---------GWNNVGQLG 212



 Score = 43.9 bits (102), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 22/51 (43%), Positives = 32/51 (62%)

Query: 56  PTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRAT 106
           P +V  + ++V SVSAG  +++ V  NG +WA GRN + QLG G   +R T
Sbjct: 320 PVKVTSMGTNVASVSAGGDYTMIVKKNGTLWATGRNADGQLGVGDTTNRIT 370


>gi|402902028|ref|XP_003913931.1| PREDICTED: RCC1 and BTB domain-containing protein 1 isoform 2
           [Papio anubis]
          Length = 355

 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 54/162 (33%), Positives = 88/162 (54%), Gaps = 5/162 (3%)

Query: 62  LPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNV 121
           L   V  V+ G +HS+A+  +G V+AWG NN  Q+G G+  ++ T   P++V     +  
Sbjct: 126 LIKQVVEVACGSHHSMALAADGEVFAWGYNNCGQVGSGSTANQPT---PRKVTNCLHIKR 182

Query: 122 CAAFASGVVSS-AIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFG 180
               A G  SS A+ D+G ++ WG +  GQLGLG +  + + P RV AL    + ++  G
Sbjct: 183 VVGIACGQTSSMAVLDNGEVYGWGYNGNGQLGLGNNGNQ-LTPVRVAALHSVCVNQIVCG 241

Query: 181 WGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDR 222
           + H LA T++G L+ WG +  G++G   K    SP    +++
Sbjct: 242 YAHTLALTDEGLLYAWGANTYGQLGTGNKNNLLSPAHIMVEK 283



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 72/293 (24%), Positives = 114/293 (38%), Gaps = 67/293 (22%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLP-SDVTSVSAGH-YHSLAVTNNGAVW 86
           V  FG      LG     TG       P ++ GL    + S+S G   H L  T +G V+
Sbjct: 43  VFVFGLNYSNCLG-----TGDNQSTLVPKKLEGLSGKKIKSLSYGSGPHVLLSTEDGVVY 97

Query: 87  AWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVV---------SSAIGDD 137
           AWG N   QLG G              +G+  + VC       V         S A+  D
Sbjct: 98  AWGHNGYSQLGNGTTN-----------QGIAPIQVCTNLLIKQVVEVACGSHHSMALAAD 146

Query: 138 GSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWG 197
           G ++ WG +  GQ+G G    +         L  +++V ++ G   ++A  ++G+++GWG
Sbjct: 147 GEVFAWGYNNCGQVGSGSTANQPTPRKVTNCLHIKRVVGIACGQTSSMAVLDNGEVYGWG 206

Query: 198 YSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWE 257
           Y+ +G++G                                       G    +  P+   
Sbjct: 207 YNGNGQLG--------------------------------------LGNNGNQLTPV--R 226

Query: 258 PFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDI 310
              +  V V  I CG+ H+L L   G+L + G+N YGQLG   ++  + P  I
Sbjct: 227 VAALHSVCVNQIVCGYAHTLALTDEGLLYAWGANTYGQLGTGNKNNLLSPAHI 279



 Score = 65.1 bits (157), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 65/250 (26%), Positives = 110/250 (44%), Gaps = 35/250 (14%)

Query: 134 IGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWG-HALAQTEDGK 192
           + DD  ++V+G +    LG G D    +VP ++E L+G+KI  +S+G G H L  TEDG 
Sbjct: 37  VTDDDEVFVFGLNYSNCLGTG-DNQSTLVPKKLEGLSGKKIKSLSYGSGPHVLLSTEDGV 95

Query: 193 LFGWGYSADGRIGN----------------LGKALESSPLDSNIDRSSESDQEISSSTIE 236
           ++ WG++   ++GN                L K +      S+   +  +D E+ +    
Sbjct: 96  VYAWGHNGYSQLGNGTTNQGIAPIQVCTNLLIKQVVEVACGSHHSMALAADGEVFAWGYN 155

Query: 237 KAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQL 296
              ++ S     +     +     ++   VV IACG   S+ +  NG +   G N  GQL
Sbjct: 156 NCGQVGSGSTANQPTPRKVTNCLHIK--RVVGIACGQTSSMAVLDNGEVYGWGYNGNGQL 213

Query: 297 GREKQDMGMFPVDI-NFHPVSIS---SGLGHSLAICEVRSSNVTGGARGIV-SWGWNRSS 351
           G       + PV +   H V ++    G  H+LA+ +           G++ +WG N   
Sbjct: 214 GLGNNGNQLTPVRVAALHSVCVNQIVCGYAHTLALTD----------EGLLYAWGANTYG 263

Query: 352 QLGRMGPDNV 361
           QLG    +N+
Sbjct: 264 QLGTGNKNNL 273


>gi|326444459|ref|ZP_08219193.1| regulator of chromosome condensation, rcc1 [Streptomyces
           clavuligerus ATCC 27064]
          Length = 416

 Score = 89.4 bits (220), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 97/340 (28%), Positives = 146/340 (42%), Gaps = 75/340 (22%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLP-SDVTSVSAGHY------HSLAVTN 81
           V S+G    G LG  T +     D Y PT +P LP  DV  ++AG         ++A+ N
Sbjct: 41  VQSWGANVTGQLGNATMI-----DRYAPTPIPALPKQDVQQLAAGADATSGSGFAVALLN 95

Query: 82  NGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAA---FASGVVSSAIGDDG 138
           +  VW WG+N++ QLG G L ++A    P RV GL+ +   AA    A  + ++    DG
Sbjct: 96  DNTVWTWGQNDKGQLGTG-LVTKAI-PVPGRVPGLNGITQVAAGSLHALALRNNGDPQDG 153

Query: 139 SLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGY 198
            +W WG +  GQLG   ++ +  VP  V+ L G   + V+ G  H+LA  E G L  WG 
Sbjct: 154 -VWAWGDNIHGQLGDSTNVPK-TVPVPVQGLTGSGTIAVATGCEHSLALREGGTLMAWGN 211

Query: 199 SADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEP 258
           +  G++GN    L + P++                     + L S               
Sbjct: 212 NDKGQLGNDTILLSTIPVE--------------------VKNLTS--------------- 236

Query: 259 FLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFHPVS-- 316
                  VV+IA G + SL    +G + + G N +G+LG  +    + PV +   P    
Sbjct: 237 ------PVVEIAAGCNFSLARLADGTIKAWGENGHGELGNGQTANSLTPVSVTGLPPGSA 290

Query: 317 --ISSGLGHSLAI-CEVRSSNVTGGARGIVSWGWNRSSQL 353
             I +G  HS A+  + R          +  WG N   QL
Sbjct: 291 ERIVAGGNHSYALYSDYR----------VYGWGSNDKGQL 320



 Score = 72.0 bits (175), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 86/307 (28%), Positives = 133/307 (43%), Gaps = 71/307 (23%)

Query: 78  AVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIG-- 135
           AV ++  V +WG N   QLG   +  R     P  +  L + +V    A    +S  G  
Sbjct: 34  AVGHDPLVQSWGANVTGQLGNATMIDRYA---PTPIPALPKQDVQQLAAGADATSGSGFA 90

Query: 136 ----DDGSLWVWGKSKRGQLGLGKDITEAI-VPSRVEALAGEKIVKVSFGWGHALAQTED 190
               +D ++W WG++ +GQLG G  +T+AI VP RV  L G  I +V+ G  HALA   +
Sbjct: 91  VALLNDNTVWTWGQNDKGQLGTGL-VTKAIPVPGRVPGLNG--ITQVAAGSLHALALRNN 147

Query: 191 GK----LFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGM 246
           G     ++ WG +  G++G+                         S+ + K   +  +G+
Sbjct: 148 GDPQDGVWAWGDNIHGQLGD-------------------------STNVPKTVPVPVQGL 182

Query: 247 EKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMF 306
                           G   + +A G +HSL L   G L++ G+N  GQLG +   +   
Sbjct: 183 ---------------TGSGTIAVATGCEHSLALREGGTLMAWGNNDKGQLGNDTILLSTI 227

Query: 307 PVDIN--FHP-VSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPDN--V 361
           PV++     P V I++G   SLA    R ++ T     I +WG N   +LG     N   
Sbjct: 228 PVEVKNLTSPVVEIAAGCNFSLA----RLADGT-----IKAWGENGHGELGNGQTANSLT 278

Query: 362 PLVVEGL 368
           P+ V GL
Sbjct: 279 PVSVTGL 285



 Score = 58.9 bits (141), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 54/184 (29%), Positives = 87/184 (47%), Gaps = 18/184 (9%)

Query: 26  GTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAV 85
           G  ++++G+  +G LG  T L      +  P  V  L S V  ++AG   SLA   +G +
Sbjct: 203 GGTLMAWGNNDKGQLGNDTILL-----STIPVEVKNLTSPVVEIAAGCNFSLARLADGTI 257

Query: 86  WAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGK 145
            AWG N   +LG G   +  T   P  V GL   +     A G  S A+  D  ++ WG 
Sbjct: 258 KAWGENGHGELGNGQTANSLT---PVSVTGLPPGSAERIVAGGNHSYALYSDYRVYGWGS 314

Query: 146 SKRGQLGLGKDITEAIVPSRVEALAGEKIVKVS---FGWGHALAQTE-DGKLFGWGYSAD 201
           + +GQL       +  +  R +A+   K+ KV+    G  + +A T+ +  + GWG +A 
Sbjct: 315 NDKGQL------ADGTINPRTQAMQASKLPKVTSIAAGKDYGIALTDGNQNIIGWGNNAR 368

Query: 202 GRIG 205
           G++G
Sbjct: 369 GQLG 372



 Score = 42.7 bits (99), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 47/171 (27%), Positives = 73/171 (42%), Gaps = 21/171 (12%)

Query: 3   LLKSVVHNHVNVLTSRI----------FMRSASGTAVVSFGDGSQGALGLPTSLTGVGGD 52
           +L S +   V  LTS +            R A GT + ++G+   G LG      G   +
Sbjct: 222 ILLSTIPVEVKNLTSPVVEIAAGCNFSLARLADGT-IKAWGENGHGELG-----NGQTAN 275

Query: 53  AYEPTRVPGLPS-DVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPK 111
           +  P  V GLP      + AG  HS A+ ++  V+ WG N++ QL  G +  R       
Sbjct: 276 SLTPVSVTGLPPGSAERIVAGGNHSYALYSDYRVYGWGSNDKGQLADGTINPRT---QAM 332

Query: 112 RVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIV 162
           +   L +V   AA     ++   G+  ++  WG + RGQLG G      +V
Sbjct: 333 QASKLPKVTSIAAGKDYGIALTDGNQ-NIIGWGNNARGQLGSGTTDPHTLV 382


>gi|6755348|ref|NP_035415.1| X-linked retinitis pigmentosa GTPase regulator isoform 3 [Mus
           musculus]
 gi|3258647|gb|AAC40190.1| retinitis pigmentosa GTPase regulator [Mus musculus]
          Length = 746

 Score = 89.4 bits (220), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 83/310 (26%), Positives = 149/310 (48%), Gaps = 29/310 (9%)

Query: 32  FGDGSQGALGLPTSLTGVGGDAYEPTRVPGL-PSDVTSVSAGHYHSLAVTNNGAVWAWGR 90
           FG  + G LGL     G      +PT +  L P  V   + G  H+L  T+ G V+A G 
Sbjct: 97  FGSNNWGQLGL-----GSKAAIIKPTCIKALKPEKVKLAACGRNHTLVSTDTGGVYAAGG 151

Query: 91  NNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQ 150
           NNE QLG G  + R T++        D +   +A A+   S+A+ +DG L++WG +  GQ
Sbjct: 152 NNEGQLGLGDTDDRDTFHQIVFFTPADTIKQLSAGAN--TSAALTEDGKLFMWGDNSEGQ 209

Query: 151 LGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKA 210
           +GL +D +   +P   E   G+ I  +S G+ H+   T DG+L+ +G   +G++G   + 
Sbjct: 210 IGL-EDKSNVCIPH--EVTVGKPISWISCGYYHSAFVTMDGELYTFGEPENGKLGLPNEL 266

Query: 211 LESSPLDSNIDRSSESDQEISS---STIEKAQKLV-SEGMEKE------KYMPIIWEPFL 260
           L +      +    E   +++     T+   +K+V + G+ +        ++    EP +
Sbjct: 267 LMNHRSPQRVLGIPERVIQVACGGGHTVVLTEKVVYAFGLGQFGQLGLGTFLFETSEPKI 326

Query: 261 VEGV---EVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFHPVSI 317
           +E +   ++  I+CG +H+ ++   G+L + G   +G+LG     +GM      F P   
Sbjct: 327 IERIKDQKICHISCGENHTALMTELGLLYTFGDGRHGKLG-----LGMENFTNQFFPTLC 381

Query: 318 SSGLGHSLAI 327
           S+ L  ++ +
Sbjct: 382 SNFLRFAVQL 391



 Score = 65.5 bits (158), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 72/295 (24%), Positives = 115/295 (38%), Gaps = 68/295 (23%)

Query: 69  VSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASG 128
           +S G  H+  VT N  ++ +G NN  QLG G   S+A    P  ++ L    V  A    
Sbjct: 78  LSCGDEHTAIVTGNNKLYMFGSNNWGQLGLG---SKAAIIKPTCIKALKPEKVKLAACGR 134

Query: 129 VVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQT 188
             +    D G ++  G +  GQLGLG           V     + I ++S G   + A T
Sbjct: 135 NHTLVSTDTGGVYAAGGNNEGQLGLGDTDDRDTFHQIVFFTPADTIKQLSAGANTSAALT 194

Query: 189 EDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEK 248
           EDGKLF WG +++G+IG   K+    P +  + +                          
Sbjct: 195 EDGKLFMWGDNSEGQIGLEDKSNVCIPHEVTVGK-------------------------- 228

Query: 249 EKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLG---------RE 299
               PI W            I+CG+ HS  +  +G L + G    G+LG         R 
Sbjct: 229 ----PISW------------ISCGYYHSAFVTMDGELYTFGEPENGKLGLPNELLMNHRS 272

Query: 300 KQDMGMFPVDINFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLG 354
            Q +   P  +    + ++ G GH++ + E          + + ++G  +  QLG
Sbjct: 273 PQRVLGIPERV----IQVACGGGHTVVLTE----------KVVYAFGLGQFGQLG 313



 Score = 57.8 bits (138), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 42/158 (26%), Positives = 72/158 (45%), Gaps = 7/158 (4%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAW 88
           + +FG+   G LGLP  L     +   P RV G+P  V  V+ G  H++ +T    V+A+
Sbjct: 249 LYTFGEPENGKLGLPNELL---MNHRSPQRVLGIPERVIQVACGGGHTVVLTEK-VVYAF 304

Query: 89  GRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKR 148
           G     QLG G      +  +PK +E +    +C        ++ + + G L+ +G  + 
Sbjct: 305 GLGQFGQLGLGTFLFETS--EPKIIERIKDQKICHISCGENHTALMTELGLLYTFGDGRH 362

Query: 149 GQLGLG-KDITEAIVPSRVEALAGEKIVKVSFGWGHAL 185
           G+LGLG ++ T    P+         +  ++ G  H L
Sbjct: 363 GKLGLGMENFTNQFFPTLCSNFLRFAVQLIACGGCHML 400


>gi|328873771|gb|EGG22137.1| regulator of chromosome condensation domain-containing protein
           [Dictyostelium fasciculatum]
          Length = 1859

 Score = 89.4 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 60/196 (30%), Positives = 97/196 (49%), Gaps = 14/196 (7%)

Query: 16  TSRIFMRSASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLP-SDVTSVSAGHY 74
           +SR   +  +   ++++G  S   LG  T   G       P R+P     ++ S+S G Y
Sbjct: 577 SSRSATQLDTQRGIMTWGSSSNCKLGFKTE--GREQSQATPERLPNFNIPEICSISCGSY 634

Query: 75  HSLAVTNNGAVWAWGRNNEVQ-----LGRGALESRATWNDPKRVEGLDQVNVCAAFASGV 129
           +S A+T NG V+ WGR +        LG G+LE +     P +VE L +V + +      
Sbjct: 635 YSAALTENGDVYMWGRGSVKNPPLSTLGNGSLEDQLL---PTKVESLSEVVLVS--IGYY 689

Query: 130 VSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTE 189
            S+A+  +G L  WG  + GQLG G D+    +P  V+ +    + +V  G  H +  T+
Sbjct: 690 HSAALKSNGELLTWGCGEDGQLGHG-DVLNQTIPKVVQTMTSHWVTQVQCGEKHTICLTK 748

Query: 190 DGKLFGWGYSADGRIG 205
           +GK+F WG S  G++G
Sbjct: 749 NGKVFTWGTSEYGQLG 764



 Score = 83.6 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 76/280 (27%), Positives = 125/280 (44%), Gaps = 11/280 (3%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAW 88
           V  +G GS     L T   G   D   PT+V  L S+V  VS G+YHS A+ +NG +  W
Sbjct: 645 VYMWGRGSVKNPPLSTLGNGSLEDQLLPTKVESL-SEVVLVSIGYYHSAALKSNGELLTW 703

Query: 89  GRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKR 148
           G   + QLG G + ++     PK V+ +    V         +  +  +G ++ WG S+ 
Sbjct: 704 GCGEDGQLGHGDVLNQTI---PKVVQTMTSHWVTQVQCGEKHTICLTKNGKVFTWGTSEY 760

Query: 149 GQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLG 208
           GQLGLG D  +   P  V +L    I++++ G  H    T   ++  +G  A     N+ 
Sbjct: 761 GQLGLG-DTQKNCTPMLVTSLEKYNIIQIACGSTHCAVLTNAREVLVFGNGAAMGSANII 819

Query: 209 KALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKE---KYMPIIWEPFLVEGVE 265
                 P   +++    S    S++ + +   + + G  +E           P LV+G+ 
Sbjct: 820 SVPMMVPALKHLNIERLSCGHYSTAALTECGDVYTWGSGQELGHGTNQSELHPKLVDGLR 879

Query: 266 ---VVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQD 302
              +  I+CG  H   L  +G + +CG + +GQLG  + D
Sbjct: 880 SQSIRQISCGGRHMAFLTDSGKIYTCGKDPFGQLGHAQGD 919


>gi|392347372|ref|XP_342701.4| PREDICTED: probable E3 ubiquitin-protein ligase HERC6 [Rattus
           norvegicus]
          Length = 1185

 Score = 89.4 bits (220), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 85/309 (27%), Positives = 137/309 (44%), Gaps = 56/309 (18%)

Query: 70  SAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGV 129
           ++G  HSL + +N  V++ G N+  QLG+ + +S      P+ ++ L  V++        
Sbjct: 185 ASGERHSLLLFSNHRVYSCGDNSRGQLGQKSPQSTKR---PEPIQALSTVHIDLVSCGKE 241

Query: 130 VSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTE 189
            S A+   G ++ WG    GQLG+G+    + +P+++ +LAG KI++VS G  H+LA +E
Sbjct: 242 HSVAVCHQGRVFTWGAGSEGQLGIGESKEISFMPTKINSLAGIKIIQVSCGHYHSLALSE 301

Query: 190 DGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKE 249
           DG++F WG +  G++G LG  L           S  S Q++ S                 
Sbjct: 302 DGQVFSWGSNRQGQLG-LGNNL----------CSQASPQKVKS----------------- 333

Query: 250 KYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQL---GREKQDMGMF 306
                      +EG+ +  +A G  HS  L   G     G+N  GQL   G   ++    
Sbjct: 334 -----------LEGIPLAQVAAGGTHSFALSLMGTSFGWGNNRSGQLALSGNSAKEQIYK 382

Query: 307 PVDI----NFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPDNVP 362
           P  I      + V IS G  H+  + E       GG+    S     S + GR GP    
Sbjct: 383 PHSIGALKTLNVVYISCGYEHTSVLTEDGQVFTFGGSS---SEQLQHSPRSGRGGPQ--- 436

Query: 363 LVVEGLEGE 371
            ++EG+ G 
Sbjct: 437 -LIEGIGGH 444


>gi|356516391|ref|XP_003526878.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC2-like [Glycine
           max]
          Length = 440

 Score = 89.4 bits (220), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 77/273 (28%), Positives = 125/273 (45%), Gaps = 54/273 (19%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVP---GLPSDVTSVSAGHYHSLAVTNNGAV 85
           V S+G    G LGL TS      D+  P ++    G+P  +  V+AG  HS+A+T NG +
Sbjct: 139 VQSWGRNQNGQLGLGTS-----EDSLVPQKIQTFQGVP--IKMVAAGAEHSVAITENGEL 191

Query: 86  WAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGK 145
           + WG      LG G    R     P++V  +D   +         + ++   G L+ +G 
Sbjct: 192 YGWGWGRYGNLGLGDRNDRWI---PEKVSSVDCDKMVMVACGWRHTISVSSLGGLYTYGW 248

Query: 146 SKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIG 205
           SK GQLG G +  +++VP +++AL+ + I +VS GW H++A T  G L+GWG++  G++G
Sbjct: 249 SKYGQLGHG-NFEDSLVPQKLQALSDKLISQVSGGWRHSMALTSTGLLYGWGWNKFGQVG 307

Query: 206 NLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVE 265
                     +  N+DR S                            P+  +       +
Sbjct: 308 ----------VGDNVDRCS----------------------------PV--QVKFPHDQK 327

Query: 266 VVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGR 298
           VV I+CG+ H++ +     + S G    GQLG 
Sbjct: 328 VVQISCGWRHTIAVTEKENVFSWGRGTNGQLGH 360



 Score = 82.0 bits (201), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 88/323 (27%), Positives = 146/323 (45%), Gaps = 42/323 (13%)

Query: 55  EPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVE 114
           E T     PS V  +SAG  H++A+ +   V +WGR  + QLG G  + R     P  + 
Sbjct: 4   EVTAATSPPSRVLLISAGASHTVALLSGNVVCSWGRGEDGQLGHGDTDDRLL---PTHLS 60

Query: 115 GLD--QVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGE 172
            LD  Q++  A  A   ++ +   +  L+ WG    G+LG G   ++ ++P  + AL G 
Sbjct: 61  ALDAQQIDSIACGADHTLAYSESRN-ELYSWGWGDFGRLGHGNS-SDLLIPQPIIALQGL 118

Query: 173 KIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISS 232
           +I +++ G  H LA T +G++  WG + +G++G LG + E S +   I        ++ +
Sbjct: 119 RIKQIACGDSHCLAVTMEGEVQSWGRNQNGQLG-LGTS-EDSLVPQKIQTFQGVPIKMVA 176

Query: 233 STIEKAQKLVSEGMEKEKY--------------MPIIWEPFLVEGVE---VVDIACGFDH 275
           +  E +  +   G   E Y                  W P  V  V+   +V +ACG+ H
Sbjct: 177 AGAEHSVAITENG---ELYGWGWGRYGNLGLGDRNDRWIPEKVSSVDCDKMVMVACGWRH 233

Query: 276 SLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFHP----VSISSGLGHSLAICEVR 331
           ++ +   G L + G + YGQLG    +  + P  +          +S G  HS+A+    
Sbjct: 234 TISVSSLGGLYTYGWSKYGQLGHGNFEDSLVPQKLQALSDKLISQVSGGWRHSMALTS-- 291

Query: 332 SSNVTGGARGIVSWGWNRSSQLG 354
               TG   G   WGWN+  Q+G
Sbjct: 292 ----TGLLYG---WGWNKFGQVG 307



 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 53/185 (28%), Positives = 94/185 (50%), Gaps = 10/185 (5%)

Query: 32  FGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSD-VTSVSAGHYHSLAVTNNGAVWAWGR 90
           +G G  G LGL     G   D + P +V  +  D +  V+ G  H+++V++ G ++ +G 
Sbjct: 194 WGWGRYGNLGL-----GDRNDRWIPEKVSSVDCDKMVMVACGWRHTISVSSLGGLYTYGW 248

Query: 91  NNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQ 150
           +   QLG G  E       P++++ L    +         S A+   G L+ WG +K GQ
Sbjct: 249 SKYGQLGHGNFEDSLV---PQKLQALSDKLISQVSGGWRHSMALTSTGLLYGWGWNKFGQ 305

Query: 151 LGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKA 210
           +G+G ++ +   P +V+    +K+V++S GW H +A TE   +F WG   +G++G+    
Sbjct: 306 VGVGDNV-DRCSPVQVKFPHDQKVVQISCGWRHTIAVTEKENVFSWGRGTNGQLGHGDTV 364

Query: 211 LESSP 215
             +SP
Sbjct: 365 DRNSP 369


>gi|291408963|ref|XP_002720777.1| PREDICTED: regulator of chromosome condensation (RCC1) and BTB
           (POZ) domain containing protein 1 [Oryctolagus
           cuniculus]
          Length = 531

 Score = 89.4 bits (220), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 53/162 (32%), Positives = 87/162 (53%), Gaps = 5/162 (3%)

Query: 62  LPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNV 121
           L   V  V+ G +HS+ +  +G V+AWG NN  Q+G G+  ++ T   P++V     +  
Sbjct: 126 LIKQVVEVACGSHHSMVLAADGEVYAWGYNNCGQVGSGSTANQPT---PRKVTNCLHIKR 182

Query: 122 CAAFASGVVSS-AIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFG 180
               A G  SS A+ D+G ++ WG +  GQLGLG +  + + P RV AL    + ++  G
Sbjct: 183 VVGIACGQTSSMAVLDNGEVYAWGYNGNGQLGLGNNGNQ-LTPVRVAALHSVCVNQIVCG 241

Query: 181 WGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDR 222
           + H LA T++G L+ WG +  G++G   K    SP    +++
Sbjct: 242 YAHTLALTDEGLLYAWGANTYGQLGTGNKNNLLSPAHVMVEK 283



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 69/293 (23%), Positives = 115/293 (39%), Gaps = 67/293 (22%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLP-SDVTSVSAGH-YHSLAVTNNGAVW 86
           V  FG      LG     TG       P ++  L    + S+S G   H L  T +G V+
Sbjct: 43  VFVFGLNYSNCLG-----TGDNQSTLVPKKLEALCGKKIKSLSYGSGPHVLLSTEDGVVY 97

Query: 87  AWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCA-AFASGVVSSAIGD--------D 137
           AWG N   QLG G              +G+  + VC       VV  A G         D
Sbjct: 98  AWGHNGYSQLGNGTTN-----------QGIAPIQVCTNLLIKQVVEVACGSHHSMVLAAD 146

Query: 138 GSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWG 197
           G ++ WG +  GQ+G G    +         L  +++V ++ G   ++A  ++G+++ WG
Sbjct: 147 GEVYAWGYNNCGQVGSGSTANQPTPRKVTNCLHIKRVVGIACGQTSSMAVLDNGEVYAWG 206

Query: 198 YSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWE 257
           Y+ +G++G      + +P+             +++                         
Sbjct: 207 YNGNGQLGLGNNGNQLTPV------------RVAA------------------------- 229

Query: 258 PFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDI 310
              +  V V  I CG+ H+L L   G+L + G+N YGQLG   ++  + P  +
Sbjct: 230 ---LHSVCVNQIVCGYAHTLALTDEGLLYAWGANTYGQLGTGNKNNLLSPAHV 279



 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 73/293 (24%), Positives = 128/293 (43%), Gaps = 60/293 (20%)

Query: 76  SLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCA-AFASGVVSSAI 134
           +L VT++  V+ +G N    LG G  +S      PK++E L    + + ++ SG      
Sbjct: 34  ALYVTDSDEVFVFGLNYSNCLGTGDNQSTLV---PKKLEALCGKKIKSLSYGSGPHVLLS 90

Query: 135 GDDGSLWVWGKSKRGQLGLGKDITEAIVPSRV-EALAGEKIVKVSFGWGHALAQTEDGKL 193
            +DG ++ WG +   QLG G    + I P +V   L  +++V+V+ G  H++    DG++
Sbjct: 91  TEDGVVYAWGHNGYSQLGNGT-TNQGIAPIQVCTNLLIKQVVEVACGSHHSMVLAADGEV 149

Query: 194 FGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMP 253
           + WGY+  G++G+   A + +P                        + V+  +  ++   
Sbjct: 150 YAWGYNNCGQVGSGSTANQPTP------------------------RKVTNCLHIKR--- 182

Query: 254 IIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDI-NF 312
                       VV IACG   S+ +  NG + + G N  GQLG       + PV +   
Sbjct: 183 ------------VVGIACGQTSSMAVLDNGEVYAWGYNGNGQLGLGNNGNQLTPVRVAAL 230

Query: 313 HPVSIS---SGLGHSLAICEVRSSNVTGGARGIV-SWGWNRSSQLGRMGPDNV 361
           H V ++    G  H+LA+ +           G++ +WG N   QLG    +N+
Sbjct: 231 HSVCVNQIVCGYAHTLALTD----------EGLLYAWGANTYGQLGTGNKNNL 273


>gi|335296869|ref|XP_003357882.1| PREDICTED: RCC1 and BTB domain-containing protein 1 [Sus scrofa]
          Length = 531

 Score = 89.4 bits (220), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 54/162 (33%), Positives = 89/162 (54%), Gaps = 5/162 (3%)

Query: 62  LPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNV 121
           L   V  V+ G +HS+A+  +G V+AWG NN  Q+G G+  ++ T   P++V     +  
Sbjct: 126 LIKQVVEVACGSHHSMALAADGEVFAWGYNNCGQVGSGSTANQPT---PRKVTNCLHIKR 182

Query: 122 CAAFASGVVSS-AIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFG 180
             + A G  SS A+ D+G ++ WG +  GQLGLG +  + + P RV AL    + ++  G
Sbjct: 183 VVSIACGQTSSMAVLDNGEVYGWGYNGNGQLGLGNNGNQ-LTPVRVAALHSVCVNQIVCG 241

Query: 181 WGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDR 222
           + H LA T++G L+ WG +  G++G   K    SP    +++
Sbjct: 242 YAHTLALTDEGLLYAWGANTYGQLGTGNKNNLLSPAHIMVEK 283



 Score = 74.7 bits (182), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 70/293 (23%), Positives = 116/293 (39%), Gaps = 67/293 (22%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLP-SDVTSVSAGH-YHSLAVTNNGAVW 86
           V  FG      LG     TG       P ++  L    + S+S G   H L  T +G V+
Sbjct: 43  VFVFGLNYSNCLG-----TGDNQSTLVPKKLEALCGKKIKSLSYGSGPHVLLSTEDGVVY 97

Query: 87  AWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVV---------SSAIGDD 137
           AWG N   QLG G              +G+  + VC       V         S A+  D
Sbjct: 98  AWGHNGYSQLGNGTTN-----------QGIAPIQVCTNLLIKQVVEVACGSHHSMALAAD 146

Query: 138 GSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWG 197
           G ++ WG +  GQ+G G    +         L  +++V ++ G   ++A  ++G+++GWG
Sbjct: 147 GEVFAWGYNNCGQVGSGSTANQPTPRKVTNCLHIKRVVSIACGQTSSMAVLDNGEVYGWG 206

Query: 198 YSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWE 257
           Y+ +G++G      + +P+             +++                         
Sbjct: 207 YNGNGQLGLGNNGNQLTPV------------RVAA------------------------- 229

Query: 258 PFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDI 310
              +  V V  I CG+ H+L L   G+L + G+N YGQLG   ++  + P  I
Sbjct: 230 ---LHSVCVNQIVCGYAHTLALTDEGLLYAWGANTYGQLGTGNKNNLLSPAHI 279



 Score = 68.9 bits (167), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 76/293 (25%), Positives = 128/293 (43%), Gaps = 60/293 (20%)

Query: 76  SLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCA-AFASGVVSSAI 134
           +L VT+N  V+ +G N    LG G  +S      PK++E L    + + ++ SG      
Sbjct: 34  ALYVTDNDEVFVFGLNYSNCLGTGDNQSTLV---PKKLEALCGKKIKSLSYGSGPHVLLS 90

Query: 135 GDDGSLWVWGKSKRGQLGLGKDITEAIVPSRV-EALAGEKIVKVSFGWGHALAQTEDGKL 193
            +DG ++ WG +   QLG G    + I P +V   L  +++V+V+ G  H++A   DG++
Sbjct: 91  TEDGVVYAWGHNGYSQLGNGT-TNQGIAPIQVCTNLLIKQVVEVACGSHHSMALAADGEV 149

Query: 194 FGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMP 253
           F WGY+  G++G+   A + +P                        + V+  +  ++   
Sbjct: 150 FAWGYNNCGQVGSGSTANQPTP------------------------RKVTNCLHIKR--- 182

Query: 254 IIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDI-NF 312
                       VV IACG   S+ +  NG +   G N  GQLG       + PV +   
Sbjct: 183 ------------VVSIACGQTSSMAVLDNGEVYGWGYNGNGQLGLGNNGNQLTPVRVAAL 230

Query: 313 HPVSIS---SGLGHSLAICEVRSSNVTGGARGIV-SWGWNRSSQLGRMGPDNV 361
           H V ++    G  H+LA+ +           G++ +WG N   QLG    +N+
Sbjct: 231 HSVCVNQIVCGYAHTLALTD----------EGLLYAWGANTYGQLGTGNKNNL 273


>gi|403254345|ref|XP_003919932.1| PREDICTED: tryptophan 5-hydroxylase 1 [Saimiri boliviensis
           boliviensis]
          Length = 863

 Score = 89.4 bits (220), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 96/325 (29%), Positives = 138/325 (42%), Gaps = 67/325 (20%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAW 88
           V+S G  S G LG+P            P  +      +  ++AG  H+LA T  G V+ W
Sbjct: 549 VLSCGSNSFGQLGVPHG----PRRCVVPQAIELHKEKIVCIAAGLRHALAATVRGIVFQW 604

Query: 89  G-----RNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVW 143
           G     R   +  G+  L    T  +P RV GL+        A    S+++ D G ++VW
Sbjct: 605 GTGLASRGRRLCPGQ-TLPLFFTAKEPSRVTGLENSKAVCVIAGSDHSASLTDAGEVYVW 663

Query: 144 GKSKRGQLGLGKDITEAI---VPSRVEA--LAGEKIVKVSFGWGHALAQTEDGKLFGWGY 198
           G +K GQL      TEA    VP ++EA     E +  V  GW H +AQTE GK+F WG 
Sbjct: 664 GSNKHGQLA-----TEAAFLPVPQKIEAHCFQNENVTAVWSGWTHLVAQTETGKVFTWG- 717

Query: 199 SADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEK---YMPII 255
            AD   G LG+ LE+                              EG + EK   ++P  
Sbjct: 718 RAD--YGQLGRKLET-----------------------------YEGWKLEKQDSFLPCS 746

Query: 256 WEPFLVEG-----VEVVDIACGFDHSL-VLGRNGVLLSCGSNVYGQLGREKQDMGMFPVD 309
             P  +           +++CG +H+L V+G  GV  S G N +G  G   +     P  
Sbjct: 747 RPPNSMPSSLHCLTGATEVSCGSEHNLAVIG--GVCYSWGWNEHGMCGDGTEANVWAPKP 804

Query: 310 INFHPVS----ISSGLGHSLAICEV 330
           +   P S    +  G GHSLA+C++
Sbjct: 805 VQALPSSSGLLVGCGAGHSLALCQL 829



 Score = 65.5 bits (158), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 99/380 (26%), Positives = 150/380 (39%), Gaps = 55/380 (14%)

Query: 33  GDGSQGALGLPTSLTGVGGDAYEPTRVPGL--PSDVTSVSAGHYHSLAVTNNGAVWAWGR 90
           G  S G LGL     G   D   P ++     P  +  ++ G  HS  +T+ G ++  G 
Sbjct: 448 GANSYGQLGL-----GHKEDVLLPQQLNDFCKPRCIRRITGGGGHSAIITDGGDLFVCGL 502

Query: 91  NNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQ 150
           N + QLG G  E   ++   K + G     V   +   ++   + ++G +   G +  GQ
Sbjct: 503 NRDGQLGLGHTEDVPSFTPCKSLLGCPIQQVACGWDFTII---LTENGQVLSCGSNSFGQ 559

Query: 151 LGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGW--GYSADGRIGNLG 208
           LG+       +VP  +E L  EKIV ++ G  HALA T  G +F W  G ++ GR    G
Sbjct: 560 LGVPHGPRRCVVPQAIE-LHKEKIVCIAAGLRHALAATVRGIVFQWGTGLASRGRRLCPG 618

Query: 209 KALESSPLDSNIDRSS-----ESDQEIS-------SSTIEKAQKLVSEGMEKE------- 249
           + L   PL       S     E+ + +        S+++  A ++   G  K        
Sbjct: 619 QTL---PLFFTAKEPSRVTGLENSKAVCVIAGSDHSASLTDAGEVYVWGSNKHGQLATEA 675

Query: 250 KYMPIIW--EPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGR--------- 298
            ++P+    E    +   V  +  G+ H +     G + + G   YGQLGR         
Sbjct: 676 AFLPVPQKIEAHCFQNENVTAVWSGWTHLVAQTETGKVFTWGRADYGQLGRKLETYEGWK 735

Query: 299 -EKQDMGMFPVD--INFHPVSISSGLGHSLAIC-EVRSSNVTGGARGIVSWGWNRSSQLG 354
            EKQD    P     N  P S+    G +   C    +  V GG     SWGWN     G
Sbjct: 736 LEKQD-SFLPCSRPPNSMPSSLHCLTGATEVSCGSEHNLAVIGGV--CYSWGWNEHGMCG 792

Query: 355 RMGPDNV--PLVVEGLEGES 372
                NV  P  V+ L   S
Sbjct: 793 DGTEANVWAPKPVQALPSSS 812



 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 96/364 (26%), Positives = 147/364 (40%), Gaps = 64/364 (17%)

Query: 31  SFGDGSQGALGLPTSLTGVGGDAYEP-TRVPGLPSDVTSVSAGH---YHSLAVTNNGAVW 86
           SF D  +       ++    G  Y P TR   +  D  S++       H L V ++    
Sbjct: 388 SFEDAKEKMREFTKTIKRPFGVKYNPYTRSIQILKDTKSITNAMNELQHDLHVVSDA--L 445

Query: 87  AWGRNNEVQLGRGALES---RATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVW 143
           A G N+  QLG G  E        ND  +   + ++        G  S+ I D G L+V 
Sbjct: 446 AKGANSYGQLGLGHKEDVLLPQQLNDFCKPRCIRRIT-----GGGGHSAIITDGGDLFVC 500

Query: 144 GKSKRGQLGLGKDITEAIVPS--RVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSAD 201
           G ++ GQLGLG   TE  VPS    ++L G  I +V+ GW   +  TE+G++   G ++ 
Sbjct: 501 GLNRDGQLGLGH--TED-VPSFTPCKSLLGCPIQQVACGWDFTIILTENGQVLSCGSNSF 557

Query: 202 GRIGNLGKALESSPLDSNIDRSSESDQE----------------ISSSTIEKAQKLVSEG 245
           G++G     +   P    + ++ E  +E                +     +    L S G
Sbjct: 558 GQLG-----VPHGPRRCVVPQAIELHKEKIVCIAAGLRHALAATVRGIVFQWGTGLASRG 612

Query: 246 --MEKEKYMPIIW---EPFLVEGVEVVDIAC---GFDHSLVLGRNGVLLSCGSNVYGQLG 297
             +   + +P+ +   EP  V G+E     C   G DHS  L   G +   GSN +GQL 
Sbjct: 613 RRLCPGQTLPLFFTAKEPSRVTGLENSKAVCVIAGSDHSASLTDAGEVYVWGSNKHGQLA 672

Query: 298 REKQDMGMFPVDINFHP------VSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSS 351
            E   + + P  I  H        ++ SG  H +A  E      TG    + +WG     
Sbjct: 673 TEAAFLPV-PQKIEAHCFQNENVTAVWSGWTHLVAQTE------TG---KVFTWGRADYG 722

Query: 352 QLGR 355
           QLGR
Sbjct: 723 QLGR 726


>gi|221113828|ref|XP_002154529.1| PREDICTED: RCC1 and BTB domain-containing protein 1-like, partial
           [Hydra magnipapillata]
          Length = 364

 Score = 89.4 bits (220), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 84/285 (29%), Positives = 119/285 (41%), Gaps = 53/285 (18%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGL-PSDVTSVSAGH-YHSLAVTNNGAVW 86
           V + G    G LG+     G G    EP  +  L   D+  ++ G   H LAVT++G ++
Sbjct: 43  VYALGFNGNGCLGV-----GDGSSTLEPKIIEQLCQKDIVQLAYGMGPHVLAVTDSGELY 97

Query: 87  AWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKS 146
           +WG     QLG  + E        K V    Q  V         S A+ +DG ++ WG +
Sbjct: 98  SWGHGGYGQLGHTSEEKS------KPVLVYMQKKVIQVACGSYHSIALTEDGEVYAWGSN 151

Query: 147 KRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGN 206
             GQLGLG    +A  P RV  +  +KIV VS G    +  T DG+L+ WGY+ +G++G 
Sbjct: 152 NCGQLGLGISNNQA-TPKRVSLIPSKKIVSVSCGQSFTVMLTTDGELYSWGYNGNGQLG- 209

Query: 207 LGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEV 266
                        I+ ++   Q +  +       L  + +EK                  
Sbjct: 210 -------------IENNTNQLQPVRVT-----GSLFGKFIEK------------------ 233

Query: 267 VDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDIN 311
             I CG  H LVL   G L S G+N YGQLG         P  IN
Sbjct: 234 --IVCGMAHVLVLTDIGELYSWGANSYGQLGLGTTHNTSVPTLIN 276



 Score = 70.5 bits (171), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 80/298 (26%), Positives = 125/298 (41%), Gaps = 64/298 (21%)

Query: 76  SLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCA-AFASGVVSSAI 134
           +L    NG V+A G N    LG G   S     +PK +E L Q ++   A+  G    A+
Sbjct: 34  ALLTLTNGDVYALGFNGNGCLGVGDGSSTL---EPKIIEQLCQKDIVQLAYGMGPHVLAV 90

Query: 135 GDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLF 194
            D G L+ WG    GQLG   +  E   P  V     +K+++V+ G  H++A TEDG+++
Sbjct: 91  TDSGELYSWGHGGYGQLGHTSE--EKSKP--VLVYMQKKVIQVACGSYHSIALTEDGEVY 146

Query: 195 GWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPI 254
            WG +  G++G LG           I  +  + + +S                       
Sbjct: 147 AWGSNNCGQLG-LG-----------ISNNQATPKRVS----------------------- 171

Query: 255 IWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDIN--- 311
                L+   ++V ++CG   +++L  +G L S G N  GQLG E     + PV +    
Sbjct: 172 -----LIPSKKIVSVSCGQSFTVMLTTDGELYSWGYNGNGQLGIENNTNQLQPVRVTGSL 226

Query: 312 FHPV--SISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPDN--VPLVV 365
           F      I  G+ H L + ++           + SWG N   QLG     N  VP ++
Sbjct: 227 FGKFIEKIVCGMAHVLVLTDIGE---------LYSWGANSYGQLGLGTTHNTSVPTLI 275



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 51/178 (28%), Positives = 84/178 (47%), Gaps = 21/178 (11%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSD-VTSVSAGHYHSLAVTNNGAVWA 87
           V ++G  + G LGL     G+  +   P RV  +PS  + SVS G   ++ +T +G +++
Sbjct: 145 VYAWGSNNCGQLGL-----GISNNQATPKRVSLIPSKKIVSVSCGQSFTVMLTTDGELYS 199

Query: 88  WGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSS-----AIGDDGSLWV 142
           WG N   QLG   +E+      P RV G    ++   F   +V        + D G L+ 
Sbjct: 200 WGYNGNGQLG---IENNTNQLQPVRVTG----SLFGKFIEKIVCGMAHVLVLTDIGELYS 252

Query: 143 WGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKV-SFGWGHALA-QTEDGKLFGWGY 198
           WG +  GQLGLG     + VP+ +     ++   + +  + H  A  T  GK++ WG+
Sbjct: 253 WGANSYGQLGLGTTHNTS-VPTLINTTTDDRWSDIAAHHYNHISAGVTISGKIYMWGH 309


>gi|118092565|ref|XP_001231234.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC4 [Gallus
           gallus]
          Length = 1056

 Score = 89.4 bits (220), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 61/235 (25%), Positives = 105/235 (44%), Gaps = 42/235 (17%)

Query: 64  SDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCA 123
            ++ +VS G  H+LA+ + G V+AWG   + QLG    E       P+ ++ L ++ +  
Sbjct: 84  QNIVAVSCGEAHTLALNDKGQVYAWGLATDGQLGLPGTEE--CIRVPRNIKSLSEIQIVQ 141

Query: 124 AFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGH 183
                  S A+     ++ WG++K GQLGLG +  +   P  +++L G    +++ G  H
Sbjct: 142 VACGYYHSLALSKGSEVFSWGQNKYGQLGLGYEYKKQNSPHVIKSLLGIPFAQIAAGGAH 201

Query: 184 ALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVS 243
           +   T  G +FGWG +  G++G          L+ + DR                     
Sbjct: 202 SFVLTLSGAIFGWGRNKFGQLG----------LNDDNDR--------------------- 230

Query: 244 EGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGR 298
                  Y+P + +    +  +VV I CG DH+  L + G + + G+  YGQLG 
Sbjct: 231 -------YVPTLLKSLRTQ--KVVHICCGEDHTAALTKEGGVFTFGAGGYGQLGH 276



 Score = 85.1 bits (209), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 57/188 (30%), Positives = 96/188 (51%), Gaps = 8/188 (4%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPS-DVTSVSAGHYHSLAVTNNGAVWA 87
           V ++G  + G LGLP    G       P  +  L    +  V+ G+YHSLA++    V++
Sbjct: 105 VYAWGLATDGQLGLP----GTEECIRVPRNIKSLSEIQIVQVACGYYHSLALSKGSEVFS 160

Query: 88  WGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSK 147
           WG+N   QLG G    +   N P  ++ L  +      A G  S  +   G+++ WG++K
Sbjct: 161 WGQNKYGQLGLGYEYKKQ--NSPHVIKSLLGIPFAQIAAGGAHSFVLTLSGAIFGWGRNK 218

Query: 148 RGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNL 207
            GQLGL  D  +  VP+ +++L  +K+V +  G  H  A T++G +F +G    G++G+ 
Sbjct: 219 FGQLGLNDD-NDRYVPTLLKSLRTQKVVHICCGEDHTAALTKEGGVFTFGAGGYGQLGHN 277

Query: 208 GKALESSP 215
             + E +P
Sbjct: 278 STSHEINP 285



 Score = 72.0 bits (175), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 78/297 (26%), Positives = 118/297 (39%), Gaps = 63/297 (21%)

Query: 85  VWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWG 144
           +  WG  +  QLG G ++      +P++ +      +         +  + DDG+++  G
Sbjct: 1   MLCWGNASFGQLGLGGIDEEIVL-EPRKSDFFLNKRIRDVGCGLRHTVFVLDDGTVYTCG 59

Query: 145 KSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRI 204
            +  GQLG  K       P  V AL  + IV VS G  H LA  + G+++ WG + DG++
Sbjct: 60  CNDLGQLGHEKARKR---PEHVGALDAQNIVAVSCGEAHTLALNDKGQVYAWGLATDGQL 116

Query: 205 GNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGV 264
           G  G   E   +  NI   SE                                      +
Sbjct: 117 GLPGTE-ECIRVPRNIKSLSE--------------------------------------I 137

Query: 265 EVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLG----REKQDMGMFPVDINFHPVSISSG 320
           ++V +ACG+ HSL L +   + S G N YGQLG     +KQ+           P  I S 
Sbjct: 138 QIVQVACGYYHSLALSKGSEVFSWGQNKYGQLGLGYEYKKQN----------SPHVIKSL 187

Query: 321 LGHSLAICEV--RSSNVTGGARGIVSWGWNRSSQLGRMGPDN---VPLVVEGLEGES 372
           LG   A        S V   +  I  WG N+  QLG +  DN   VP +++ L  + 
Sbjct: 188 LGIPFAQIAAGGAHSFVLTLSGAIFGWGRNKFGQLG-LNDDNDRYVPTLLKSLRTQK 243


>gi|355687448|gb|EHH26032.1| E3 ISG15--protein ligase HERC5 [Macaca mulatta]
          Length = 883

 Score = 89.4 bits (220), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 72/232 (31%), Positives = 114/232 (49%), Gaps = 25/232 (10%)

Query: 22  RSASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVP-------GLPSDVTSVSAGHY 74
           R+ SG  + ++G    G LG+        G  +  T  P       G+P  +  +SAG  
Sbjct: 86  RTPSG-ELFAWGQNLHGQLGV--------GRKFPSTTTPQIVEHLAGVP--LAQISAGEA 134

Query: 75  HSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAI 134
           HS+A++ +G +++WG+N   QLG G  ES+   + P  +E LD   V      G  S+ +
Sbjct: 135 HSMALSMSGNIYSWGKNEFGQLGLGHTESK---DSPSLIEALDNQKVEFLACGGSHSALL 191

Query: 135 GDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTED-GKL 193
             DG L+ +G  K GQLG      E + P  V  L G ++ +++ G  H LA   D GK+
Sbjct: 192 TQDGLLFTFGAGKHGQLGHNSTQNE-LRPCLVAELVGNRVTQIACGRWHTLAYVSDFGKV 250

Query: 194 FGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEG 245
           F +G   DG++GN G   +  PL   +  SS  + ++ S T EK   +++ G
Sbjct: 251 FSFGSGKDGQLGNGGTLDQLIPLPVKV--SSSEELKLESHTSEKELIMIAGG 300



 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 77/269 (28%), Positives = 113/269 (42%), Gaps = 47/269 (17%)

Query: 78  AVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDD 137
           A T +G ++AWG+N   QLG G      T   P+ VE L  V +    A    S A+   
Sbjct: 85  ARTPSGELFAWGQNLHGQLGVGRKFPSTT--TPQIVEHLAGVPLAQISAGEAHSMALSMS 142

Query: 138 GSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWG 197
           G+++ WGK++ GQLGLG   ++   PS +EAL  +K+  ++ G  H+   T+DG LF +G
Sbjct: 143 GNIYSWGKNEFGQLGLGHTESKD-SPSLIEALDNQKVEFLACGGSHSALLTQDGLLFTFG 201

Query: 198 YSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWE 257
               G++G+     E  P                         LV+E             
Sbjct: 202 AGKHGQLGHNSTQNELRPC------------------------LVAE------------- 224

Query: 258 PFLVEGVEVVDIACGFDHSLVLGRN-GVLLSCGSNVYGQLGREKQDMGMFPVDINFHPVS 316
              + G  V  IACG  H+L    + G + S GS   GQLG       + P+ +    VS
Sbjct: 225 ---LVGNRVTQIACGRWHTLAYVSDFGKVFSFGSGKDGQLGNGGTLDQLIPLPVK---VS 278

Query: 317 ISSGLGHSLAICEVRSSNVTGGARGIVSW 345
            S  L       E     + GG + I+ W
Sbjct: 279 SSEELKLESHTSEKELIMIAGGNQSILLW 307


>gi|326923408|ref|XP_003207928.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC4-like isoform
           2 [Meleagris gallopavo]
          Length = 1056

 Score = 89.4 bits (220), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 61/235 (25%), Positives = 105/235 (44%), Gaps = 42/235 (17%)

Query: 64  SDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCA 123
            ++ +VS G  H+LA+ + G V+AWG   + QLG    E       P+ ++ L ++ +  
Sbjct: 84  QNIVAVSCGEAHTLALNDKGQVYAWGLATDGQLGLPGTEE--CIRVPRNIKSLSEIQIVQ 141

Query: 124 AFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGH 183
                  S A+     ++ WG++K GQLGLG +  +   P  +++L G    +++ G  H
Sbjct: 142 VACGYYHSLALSKGSEVFSWGQNKYGQLGLGYEYKKQNSPHVIKSLLGIPFAQIAAGGAH 201

Query: 184 ALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVS 243
           +   T  G +FGWG +  G++G          L+ + DR                     
Sbjct: 202 SFVLTLSGAIFGWGRNKFGQLG----------LNDDNDR--------------------- 230

Query: 244 EGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGR 298
                  Y+P + +    +  +VV I CG DH+  L + G + + G+  YGQLG 
Sbjct: 231 -------YVPTLLKSLRTQ--KVVHICCGEDHTAALTKEGGVFTFGAGGYGQLGH 276



 Score = 85.1 bits (209), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 57/188 (30%), Positives = 96/188 (51%), Gaps = 8/188 (4%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPS-DVTSVSAGHYHSLAVTNNGAVWA 87
           V ++G  + G LGLP    G       P  +  L    +  V+ G+YHSLA++    V++
Sbjct: 105 VYAWGLATDGQLGLP----GTEECIRVPRNIKSLSEIQIVQVACGYYHSLALSKGSEVFS 160

Query: 88  WGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSK 147
           WG+N   QLG G    +   N P  ++ L  +      A G  S  +   G+++ WG++K
Sbjct: 161 WGQNKYGQLGLGYEYKKQ--NSPHVIKSLLGIPFAQIAAGGAHSFVLTLSGAIFGWGRNK 218

Query: 148 RGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNL 207
            GQLGL  D  +  VP+ +++L  +K+V +  G  H  A T++G +F +G    G++G+ 
Sbjct: 219 FGQLGLNDD-NDRYVPTLLKSLRTQKVVHICCGEDHTAALTKEGGVFTFGAGGYGQLGHN 277

Query: 208 GKALESSP 215
             + E +P
Sbjct: 278 STSHEINP 285



 Score = 72.0 bits (175), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 78/297 (26%), Positives = 118/297 (39%), Gaps = 63/297 (21%)

Query: 85  VWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWG 144
           +  WG  +  QLG G ++      +P++ +      +         +  + DDG+++  G
Sbjct: 1   MLCWGNASFGQLGLGGIDEEIVL-EPRKSDFFLNKRIRDVGCGLRHTVFVLDDGTVYTCG 59

Query: 145 KSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRI 204
            +  GQLG  K       P  V AL  + IV VS G  H LA  + G+++ WG + DG++
Sbjct: 60  CNDLGQLGHEKARKR---PEHVGALDAQNIVAVSCGEAHTLALNDKGQVYAWGLATDGQL 116

Query: 205 GNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGV 264
           G  G   E   +  NI   SE                                      +
Sbjct: 117 GLPGTE-ECIRVPRNIKSLSE--------------------------------------I 137

Query: 265 EVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLG----REKQDMGMFPVDINFHPVSISSG 320
           ++V +ACG+ HSL L +   + S G N YGQLG     +KQ+           P  I S 
Sbjct: 138 QIVQVACGYYHSLALSKGSEVFSWGQNKYGQLGLGYEYKKQN----------SPHVIKSL 187

Query: 321 LGHSLAICEV--RSSNVTGGARGIVSWGWNRSSQLGRMGPDN---VPLVVEGLEGES 372
           LG   A        S V   +  I  WG N+  QLG +  DN   VP +++ L  + 
Sbjct: 188 LGIPFAQIAAGGAHSFVLTLSGAIFGWGRNKFGQLG-LNDDNDRYVPTLLKSLRTQK 243


>gi|326923406|ref|XP_003207927.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC4-like isoform
           1 [Meleagris gallopavo]
          Length = 1048

 Score = 89.4 bits (220), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 61/235 (25%), Positives = 105/235 (44%), Gaps = 42/235 (17%)

Query: 64  SDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCA 123
            ++ +VS G  H+LA+ + G V+AWG   + QLG    E       P+ ++ L ++ +  
Sbjct: 84  QNIVAVSCGEAHTLALNDKGQVYAWGLATDGQLGLPGTEE--CIRVPRNIKSLSEIQIVQ 141

Query: 124 AFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGH 183
                  S A+     ++ WG++K GQLGLG +  +   P  +++L G    +++ G  H
Sbjct: 142 VACGYYHSLALSKGSEVFSWGQNKYGQLGLGYEYKKQNSPHVIKSLLGIPFAQIAAGGAH 201

Query: 184 ALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVS 243
           +   T  G +FGWG +  G++G          L+ + DR                     
Sbjct: 202 SFVLTLSGAIFGWGRNKFGQLG----------LNDDNDR--------------------- 230

Query: 244 EGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGR 298
                  Y+P + +    +  +VV I CG DH+  L + G + + G+  YGQLG 
Sbjct: 231 -------YVPTLLKSLRTQ--KVVHICCGEDHTAALTKEGGVFTFGAGGYGQLGH 276



 Score = 85.1 bits (209), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 57/188 (30%), Positives = 96/188 (51%), Gaps = 8/188 (4%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPS-DVTSVSAGHYHSLAVTNNGAVWA 87
           V ++G  + G LGLP    G       P  +  L    +  V+ G+YHSLA++    V++
Sbjct: 105 VYAWGLATDGQLGLP----GTEECIRVPRNIKSLSEIQIVQVACGYYHSLALSKGSEVFS 160

Query: 88  WGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSK 147
           WG+N   QLG G    +   N P  ++ L  +      A G  S  +   G+++ WG++K
Sbjct: 161 WGQNKYGQLGLGYEYKKQ--NSPHVIKSLLGIPFAQIAAGGAHSFVLTLSGAIFGWGRNK 218

Query: 148 RGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNL 207
            GQLGL  D  +  VP+ +++L  +K+V +  G  H  A T++G +F +G    G++G+ 
Sbjct: 219 FGQLGLNDD-NDRYVPTLLKSLRTQKVVHICCGEDHTAALTKEGGVFTFGAGGYGQLGHN 277

Query: 208 GKALESSP 215
             + E +P
Sbjct: 278 STSHEINP 285



 Score = 72.0 bits (175), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 78/297 (26%), Positives = 118/297 (39%), Gaps = 63/297 (21%)

Query: 85  VWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWG 144
           +  WG  +  QLG G ++      +P++ +      +         +  + DDG+++  G
Sbjct: 1   MLCWGNASFGQLGLGGIDEEIVL-EPRKSDFFLNKRIRDVGCGLRHTVFVLDDGTVYTCG 59

Query: 145 KSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRI 204
            +  GQLG  K       P  V AL  + IV VS G  H LA  + G+++ WG + DG++
Sbjct: 60  CNDLGQLGHEKARKR---PEHVGALDAQNIVAVSCGEAHTLALNDKGQVYAWGLATDGQL 116

Query: 205 GNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGV 264
           G  G   E   +  NI   SE                                      +
Sbjct: 117 GLPGTE-ECIRVPRNIKSLSE--------------------------------------I 137

Query: 265 EVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLG----REKQDMGMFPVDINFHPVSISSG 320
           ++V +ACG+ HSL L +   + S G N YGQLG     +KQ+           P  I S 
Sbjct: 138 QIVQVACGYYHSLALSKGSEVFSWGQNKYGQLGLGYEYKKQN----------SPHVIKSL 187

Query: 321 LGHSLAICEV--RSSNVTGGARGIVSWGWNRSSQLGRMGPDN---VPLVVEGLEGES 372
           LG   A        S V   +  I  WG N+  QLG +  DN   VP +++ L  + 
Sbjct: 188 LGIPFAQIAAGGAHSFVLTLSGAIFGWGRNKFGQLG-LNDDNDRYVPTLLKSLRTQK 243


>gi|66358878|ref|XP_626617.1| RCC1 domain containing protein [Cryptosporidium parvum Iowa II]
 gi|46228329|gb|EAK89228.1| RCC1 domain containing protein [Cryptosporidium parvum Iowa II]
          Length = 1878

 Score = 89.4 bits (220), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 71/274 (25%), Positives = 111/274 (40%), Gaps = 54/274 (19%)

Query: 26  GTAVVSFGDGSQGALGLPT----SLTGVGGDAY--EPTRVPGLPSDVTSVSAGHYHSLAV 79
           G  + ++GD   G LG+ T    S  G   +++  EPT +      +  V+ G +HSL  
Sbjct: 506 GGTIFAWGDNKYGQLGVDTRRRKSQNGDKNESFLNEPTEIK-FSEPIRRVACGSWHSLCC 564

Query: 80  TNNGAVWAWGRNNEVQLGRGALESR------ATWNDPKRVEGLDQVNVC--AAFASGVVS 131
              G  ++WGR +  QLG GA+ +        T  +   V G +  + C  A   +G   
Sbjct: 565 DIKGNCFSWGRGDRGQLGTGAIRNLYEPAGIVTLKNVIEVAGGELYSACIVACITTGNKD 624

Query: 132 SAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDG 191
               + G LW+WG    G+LGLG  + ++ + +      G  I+KV+ G  H L  T  G
Sbjct: 625 LDTINSGDLWIWGDGDLGKLGLGDHVLKSCIAAPRHLNLGTPIIKVALGSSHTLVLTASG 684

Query: 192 KLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKY 251
           +L  WG    GR+G       S+P+                                   
Sbjct: 685 ELITWGAGYYGRLGTNSTKSHSNPIKIR-------------------------------- 712

Query: 252 MPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVL 285
                  F ++GV++VDIA G  HS+ +   G L
Sbjct: 713 -------FPIKGVQIVDIAVGSYHSMAVSSLGDL 739



 Score = 85.9 bits (211), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 51/171 (29%), Positives = 87/171 (50%), Gaps = 10/171 (5%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSD--VTSVSAGHYHSLAVTNNGAVW 86
           V ++G G  G LG     TG   D Y P ++   P+D  V  ++AG  HSL    +G V+
Sbjct: 187 VFAWGIGQYGCLG-----TGELNDVYSPVKIEAGPTDKKVLHIAAGARHSLCCNEDGQVF 241

Query: 87  AWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKS 146
           AWG N+  +LG G   S      P +++ L Q ++    A    S  I   G ++ WG  
Sbjct: 242 AWGSNSNGRLGTGG--SYGMKTVPTQIKSLSQYHITLVAAGESHSGCIDSFGYIYTWGNG 299

Query: 147 KRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWG 197
             G+LG G   ++  +P R+E ++    V+++ G  +++A ++ G+++ WG
Sbjct: 300 GSGKLGHGTQ-SDCNIPRRIEGISSLPFVQLTLGAFNSMALSQSGEVYIWG 349



 Score = 72.8 bits (177), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 67/230 (29%), Positives = 102/230 (44%), Gaps = 25/230 (10%)

Query: 9   HNHVNVLTSRIFMRSASGTAVVSFGDGSQGALGLPTSLTGVGGDA---------YEPTR- 58
           ++H  VL   I    ASG  V + G G +G LG     T  G +          Y P   
Sbjct: 102 YSHTAVLVKGI--SEASGR-VYTMGLGDRGRLGYTRGYTEFGNEHDKNDLNESWYTPVPC 158

Query: 59  VPGLP--SDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVE-G 115
           +   P  + ++ +S G  HSLA++++G V+AWG      LG G L    +   P ++E G
Sbjct: 159 IVNFPFNAKISRISCGANHSLALSDSGLVFAWGIGQYGCLGTGELNDVYS---PVKIEAG 215

Query: 116 LDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIV 175
                V    A    S    +DG ++ WG +  G+LG G       VP+++++L+   I 
Sbjct: 216 PTDKKVLHIAAGARHSLCCNEDGQVFAWGSNSNGRLGTGGSYGMKTVPTQIKSLSQYHIT 275

Query: 176 KVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSE 225
            V+ G  H+      G ++ WG   +G  G LG   +S   D NI R  E
Sbjct: 276 LVAAGESHSGCIDSFGYIYTWG---NGGSGKLGHGTQS---DCNIPRRIE 319



 Score = 62.4 bits (150), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 82/327 (25%), Positives = 121/327 (37%), Gaps = 78/327 (23%)

Query: 70  SAGHYHSLA-VTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNV----CAA 124
           S  HY  +A + N G ++AWG N    LG G       +N P +V     + V    C  
Sbjct: 45  SLNHYFIVAKLKNKGQLYAWGVNTNNVLGLGI--ENGEFNFPMKVNFFSALEVFQVSCGY 102

Query: 125 FASGVVSSAIGD-DGSLWVWGKSKRGQLGLGKDITE---------------AIVPSRVEA 168
             + V+   I +  G ++  G   RG+LG  +  TE                 VP  V  
Sbjct: 103 SHTAVLVKGISEASGRVYTMGLGDRGRLGYTRGYTEFGNEHDKNDLNESWYTPVPCIVNF 162

Query: 169 LAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQ 228
               KI ++S G  H+LA ++ G +F WG    G+ G LG                    
Sbjct: 163 PFNAKISRISCGANHSLALSDSGLVFAWGI---GQYGCLGT------------------- 200

Query: 229 EISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSC 288
                           G   + Y P+  E    +  +V+ IA G  HSL    +G + + 
Sbjct: 201 ----------------GELNDVYSPVKIEAGPTDK-KVLHIAAGARHSLCCNEDGQVFAW 243

Query: 289 GSNVYGQLGR-EKQDMGMFPVDI----NFHPVSISSGLGHSLAICEVRSSNVTGGARGIV 343
           GSN  G+LG      M   P  I     +H   +++G  HS  I              I 
Sbjct: 244 GSNSNGRLGTGGSYGMKTVPTQIKSLSQYHITLVAAGESHSGCIDSFGY---------IY 294

Query: 344 SWGWNRSSQLGR--MGPDNVPLVVEGL 368
           +WG   S +LG       N+P  +EG+
Sbjct: 295 TWGNGGSGKLGHGTQSDCNIPRRIEGI 321



 Score = 62.0 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 75/314 (23%), Positives = 122/314 (38%), Gaps = 79/314 (25%)

Query: 62  LPS-DVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLG--------RGALESRATWNDPKR 112
           +PS  V  ++ G  H+L +   G ++AWG N   QLG        +   ++ +  N+P  
Sbjct: 485 IPSWSVRQIACGTSHTLLLVYGGTIFAWGDNKYGQLGVDTRRRKSQNGDKNESFLNEPTE 544

Query: 113 VEGLDQVNVCAAFASGVVSSAIGD-DGSLWVWGKSKRGQLGLG--KDITE----AIVPSR 165
           ++  + +      A G   S   D  G+ + WG+  RGQLG G  +++ E      + + 
Sbjct: 545 IKFSEPIR---RVACGSWHSLCCDIKGNCFSWGRGDRGQLGTGAIRNLYEPAGIVTLKNV 601

Query: 166 VEALAGEK----IVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLG------KALESSP 215
           +E   GE     IV         L     G L+ WG   DG +G LG      K+  ++P
Sbjct: 602 IEVAGGELYSACIVACITTGNKDLDTINSGDLWIWG---DGDLGKLGLGDHVLKSCIAAP 658

Query: 216 LDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDH 275
              N+                                          G  ++ +A G  H
Sbjct: 659 RHLNL------------------------------------------GTPIIKVALGSSH 676

Query: 276 SLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINF-----HPVSISSGLGHSLAICEV 330
           +LVL  +G L++ G+  YG+LG         P+ I F       V I+ G  HS+A+  +
Sbjct: 677 TLVLTASGELITWGAGYYGRLGTNSTKSHSNPIKIRFPIKGVQIVDIAVGSYHSMAVSSL 736

Query: 331 RSSNVTGGARGIVS 344
               V G A  ++S
Sbjct: 737 GDLWVWGKAENVLS 750



 Score = 55.5 bits (132), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 56/197 (28%), Positives = 85/197 (43%), Gaps = 17/197 (8%)

Query: 16  TSRIFMRSASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYH 75
           +S   + +ASG  ++++G G  G LG  T+ T    +  +  R P     +  ++ G YH
Sbjct: 674 SSHTLVLTASGE-LITWGAGYYGRLG--TNSTKSHSNPIK-IRFPIKGVQIVDIAVGSYH 729

Query: 76  SLAVTNNGAVWAWGRNNEVQLGRGALESR--ATWNDPKRVEGLDQVNVCAAFASGVVSSA 133
           S+AV++ G +W WG+   V   +  L     A    P    G+ ++    AF  G VS A
Sbjct: 730 SMAVSSLGDLWVWGKAENVLSEKDVLTPYIFAKLESP---SGVPRIYSIHAF--GDVSYA 784

Query: 134 IGDDGSLWVWG---KSKRGQLGLGKDITEAIVPSRVEA--LAGEKIVKVSFGWGHALAQT 188
           I   G LW+WG          GL   I       R E   L G  I  VS    H +   
Sbjct: 785 ITQSGVLWIWGPENSETENIQGLESSIKIKSHTGRAEMILLPGNAI-GVSGSTTHHVCLL 843

Query: 189 EDGKLFGWGYSADGRIG 205
             G++  WG  + G++G
Sbjct: 844 ASGEVVSWGDPSRGKLG 860



 Score = 52.8 bits (125), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 36/142 (25%), Positives = 64/142 (45%), Gaps = 17/142 (11%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPS-DVTSVSAGHYHSLAVTNNGAVWA 87
           V ++G  S G LG      G  G    PT++  L    +T V+AG  HS  + + G ++ 
Sbjct: 240 VFAWGSNSNGRLGT----GGSYGMKTVPTQIKSLSQYHITLVAAGESHSGCIDSFGYIYT 295

Query: 88  WGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSK 147
           WG     +LG G   +++  N P+R+EG+  +           S A+   G +++WG  +
Sbjct: 296 WGNGGSGKLGHG---TQSDCNIPRRIEGISSLPFVQLTLGAFNSMALSQSGEVYIWGAKQ 352

Query: 148 RGQLGLGKDITEAIVPSRVEAL 169
              + L         P++++A 
Sbjct: 353 HEIISL---------PTKIDAF 365



 Score = 48.1 bits (113), Expect = 0.007,   Method: Composition-based stats.
 Identities = 80/347 (23%), Positives = 135/347 (38%), Gaps = 78/347 (22%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPS-DVTSVSAGHYHSLAVTNNGAVWA 87
           + ++G+G  G LG      G   D   P R+ G+ S     ++ G ++S+A++ +G V+ 
Sbjct: 293 IYTWGNGGSGKLG-----HGTQSDCNIPRRIEGISSLPFVQLTLGAFNSMALSQSGEVYI 347

Query: 88  WG-RNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKS 146
           WG + +E+             + P +++  D  ++C   +   +S A+    ++++W   
Sbjct: 348 WGAKQHEI------------ISLPTKIDAFDS-HICHINSGPYISFAMDVRHNIYLWNN- 393

Query: 147 KRGQLGLGKDITEAIVPSR---VEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGR 203
              +L +    +EA+  S     + +  +  V + F    A     D  +F  G++    
Sbjct: 394 ---RLLVNSKKSEALNASEEQLYKRMNSKNPVLLPFFQSKAFV---DDCIFYMGFNLVDY 447

Query: 204 IGN---LGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFL 260
            GN        E      N    S    EI S        LV   +         W    
Sbjct: 448 KGNKVSYEPKSEGGLFSVNRIYKSNGSSEIGS--------LVGSQIPS-------WS--- 489

Query: 261 VEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLG----REKQDMG-------MFPVD 309
                V  IACG  H+L+L   G + + G N YGQLG    R K   G         P +
Sbjct: 490 -----VRQIACGTSHTLLLVYGGTIFAWGDNKYGQLGVDTRRRKSQNGDKNESFLNEPTE 544

Query: 310 INF-HPV-SISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLG 354
           I F  P+  ++ G  HSL  C+++ +          SWG     QLG
Sbjct: 545 IKFSEPIRRVACGSWHSLC-CDIKGN--------CFSWGRGDRGQLG 582


>gi|384947464|gb|AFI37337.1| E3 ISG15--protein ligase HERC5 [Macaca mulatta]
          Length = 1023

 Score = 89.4 bits (220), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 70/230 (30%), Positives = 112/230 (48%), Gaps = 24/230 (10%)

Query: 24  ASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVP-------GLPSDVTSVSAGHYHS 76
           + G  + ++G    G LG+        G  +  T  P       G+P  +  +SAG  HS
Sbjct: 153 SKGGELFAWGQNLHGQLGV--------GRTFPSTTTPQIVEHLAGVP--LAQISAGEAHS 202

Query: 77  LAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGD 136
           +A++ +G +++WG+N   QLG G  ES+   + P  +E LD   V      G  S+ +  
Sbjct: 203 MALSMSGNIYSWGKNEFGQLGLGHTESK---DSPSLIEALDNQKVEFLACGGSHSALLTQ 259

Query: 137 DGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTED-GKLFG 195
           DG L+ +G  K GQLG      E + P  V  L G ++ +++ G  H LA   D GK+F 
Sbjct: 260 DGLLFTFGAGKHGQLGHNSTQNE-LRPCLVAELVGNRVTQIACGRWHTLAYVSDFGKVFS 318

Query: 196 WGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEG 245
           +G   DG++GN G   +  PL   +  SS  + ++ S T EK   +++ G
Sbjct: 319 FGSGKDGQLGNGGTLDQLIPLPVKV--SSSEELKLESHTSEKELIMIAGG 366



 Score = 80.5 bits (197), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 81/281 (28%), Positives = 121/281 (43%), Gaps = 47/281 (16%)

Query: 66  VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAF 125
           +  ++ G YHSLA++  G ++AWG+N   QLG G      T   P+ VE L  V +    
Sbjct: 139 IIQITCGDYHSLALSKGGELFAWGQNLHGQLGVGRTFPSTT--TPQIVEHLAGVPLAQIS 196

Query: 126 ASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHAL 185
           A    S A+   G+++ WGK++ GQLGLG   ++   PS +EAL  +K+  ++ G  H+ 
Sbjct: 197 AGEAHSMALSMSGNIYSWGKNEFGQLGLGHTESKD-SPSLIEALDNQKVEFLACGGSHSA 255

Query: 186 AQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEG 245
             T+DG LF +G    G++G+     E  P                         LV+E 
Sbjct: 256 LLTQDGLLFTFGAGKHGQLGHNSTQNELRPC------------------------LVAE- 290

Query: 246 MEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRN-GVLLSCGSNVYGQLGREKQDMG 304
                          + G  V  IACG  H+L    + G + S GS   GQLG       
Sbjct: 291 ---------------LVGNRVTQIACGRWHTLAYVSDFGKVFSFGSGKDGQLGNGGTLDQ 335

Query: 305 MFPVDINFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSW 345
           + P+ +    VS S  L       E     + GG + I+ W
Sbjct: 336 LIPLPVK---VSSSEELKLESHTSEKELIMIAGGNQSILLW 373



 Score = 44.3 bits (103), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 36/120 (30%), Positives = 60/120 (50%), Gaps = 16/120 (13%)

Query: 260 LVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFH----PV 315
           +++  +++ I CG  HSL L + G L + G N++GQLG  +         I  H    P+
Sbjct: 133 ILQEKKIIQITCGDYHSLALSKGGELFAWGQNLHGQLGVGRTFPSTTTPQIVEHLAGVPL 192

Query: 316 S-ISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQ--LGRMGPDNVPLVVEGLEGES 372
           + IS+G  HS+A+      +++G    I SWG N   Q  LG     + P ++E L+ + 
Sbjct: 193 AQISAGEAHSMAL------SMSG---NIYSWGKNEFGQLGLGHTESKDSPSLIEALDNQK 243



 Score = 43.9 bits (102), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 39/146 (26%), Positives = 71/146 (48%), Gaps = 19/146 (13%)

Query: 169 LAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDR------ 222
           L  +KI++++ G  H+LA ++ G+LF WG +  G++G +G+   S+     ++       
Sbjct: 134 LQEKKIIQITCGDYHSLALSKGGELFAWGQNLHGQLG-VGRTFPSTTTPQIVEHLAGVPL 192

Query: 223 SSESDQEISSSTIEKAQKLVS----------EGMEKEKYMPIIWEPFLVEGVEVVDIACG 272
           +  S  E  S  +  +  + S           G  + K  P + E    + VE   +ACG
Sbjct: 193 AQISAGEAHSMALSMSGNIYSWGKNEFGQLGLGHTESKDSPSLIEALDNQKVEF--LACG 250

Query: 273 FDHSLVLGRNGVLLSCGSNVYGQLGR 298
             HS +L ++G+L + G+  +GQLG 
Sbjct: 251 GSHSALLTQDGLLFTFGAGKHGQLGH 276


>gi|408500311|ref|YP_006864230.1| putative regulator of chromosome condensation, RCC1
           [Bifidobacterium asteroides PRL2011]
 gi|408465135|gb|AFU70664.1| putative regulator of chromosome condensation, RCC1
           [Bifidobacterium asteroides PRL2011]
          Length = 1160

 Score = 89.4 bits (220), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 84/297 (28%), Positives = 125/297 (42%), Gaps = 67/297 (22%)

Query: 76  SLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDP---KRVEGLDQVNVCAAFASGVVSS 132
           +LAV ++G  +AWGRNN  QLG G L  R   N P   K+  G          ++G   S
Sbjct: 679 TLAVGSDGNAYAWGRNNYGQLGDGTLTQR---NKPVIVKKPAGASADFTYVQVSAGDEQS 735

Query: 133 -AIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRV----EALAGEKIVKVSFGWGHALAQ 187
            A+G DG ++ WG ++ GQLG G     + VP RV    +  +G   V+VS G+ H+LA 
Sbjct: 736 LAVGSDGYVYAWGNNESGQLGNGSSGGYSTVPLRVIDPNDPRSGLTAVQVSAGYYHSLAL 795

Query: 188 TEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGME 247
              G ++ WG++  G +GN                       I+S+    AQ     G  
Sbjct: 796 DARGNIWAWGFNQFGELGN--------------------GNNINSAIPTLAQYPRDAGT- 834

Query: 248 KEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFP 307
                           V  + ++ GF H+  +   G   S G N +GQLG         P
Sbjct: 835 ----------------VTAIQVSGGFHHTAAIDTKGNTWSWGWNWFGQLGNGNNIDSAIP 878

Query: 308 VDINF-------HPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMG 357
           V + +         + +S+G  HSL I + + +          +WGWN   QLG +G
Sbjct: 879 VPVQYPRDAGTVRAIQVSAGADHSL-IIDTKGN--------TWAWGWN---QLGELG 923



 Score = 85.5 bits (210), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 96/345 (27%), Positives = 146/345 (42%), Gaps = 72/345 (20%)

Query: 29   VVSFGDGSQGALGLPTSLTGVGGDAYEPTRV--PGLPSD---VTSVSAGHYHSLAVTNNG 83
            V ++G+   G LG  +S    GG +  P RV  P  P        VSAG+YHSLA+   G
Sbjct: 744  VYAWGNNESGQLGNGSS----GGYSTVPLRVIDPNDPRSGLTAVQVSAGYYHSLALDARG 799

Query: 84   AVWAWGRNNEVQLGRG-----ALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDG 138
             +WAWG N   +LG G     A+ + A +  P+    +  + V   F     ++AI   G
Sbjct: 800  NIWAWGFNQFGELGNGNNINSAIPTLAQY--PRDAGTVTAIQVSGGFHH---TAAIDTKG 854

Query: 139  SLWVWGKSKRGQLGLGKDITEAI-VPSRVEALAGE-KIVKVSFGWGHALAQTEDGKLFGW 196
            + W WG +  GQLG G +I  AI VP +    AG  + ++VS G  H+L     G  + W
Sbjct: 855  NTWSWGWNWFGQLGNGNNIDSAIPVPVQYPRDAGTVRAIQVSAGADHSLIIDTKGNTWAW 914

Query: 197  GYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIW 256
            G++  G +GN   + +++P+                            GM K        
Sbjct: 915  GWNQLGELGNGSSSADANPV---------------------------PGMVK-------- 939

Query: 257  EPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFHP-- 314
             P     V  + ++ G  HSL + +NG   + G N  G+LG         P  + +    
Sbjct: 940  YPENAGTVTAIQVSAGGYHSLAIDKNGNAWAWGGNDSGELGIGTTSKSEIPALVQYPKNA 999

Query: 315  -----VSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLG 354
                 V +S+G  HSL I +   +          +WG+N+  QLG
Sbjct: 1000 GAVTTVQVSAGGYHSLGIDKEGKT---------WAWGYNQFGQLG 1035



 Score = 69.7 bits (169), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 50/146 (34%), Positives = 74/146 (50%), Gaps = 12/146 (8%)

Query: 69   VSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDP-----KRVEGLDQVNVCA 123
            VSAG  HSL +   G  WAWG N   +LG G+  + A   +P     K  E    V    
Sbjct: 895  VSAGADHSLIIDTKGNTWAWGWNQLGELGNGSSSADA---NPVPGMVKYPENAGTVTAIQ 951

Query: 124  AFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGE---KIVKVSFG 180
              A G  S AI  +G+ W WG +  G+LG+G   +++ +P+ V+          V+VS G
Sbjct: 952  VSAGGYHSLAIDKNGNAWAWGGNDSGELGIGT-TSKSEIPALVQYPKNAGAVTTVQVSAG 1010

Query: 181  WGHALAQTEDGKLFGWGYSADGRIGN 206
              H+L   ++GK + WGY+  G++GN
Sbjct: 1011 GYHSLGIDKEGKTWAWGYNQFGQLGN 1036



 Score = 62.8 bits (151), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 44/114 (38%), Positives = 57/114 (50%), Gaps = 7/114 (6%)

Query: 69   VSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGAL---ESRATWNDPKRVEGLDQVNVCAAF 125
            VSAG YHSLA+  NG  WAWG N+  +LG G     E  A    PK    +  V V A  
Sbjct: 952  VSAGGYHSLAIDKNGNAWAWGGNDSGELGIGTTSKSEIPALVQYPKNAGAVTTVQVSAG- 1010

Query: 126  ASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSF 179
              G  S  I  +G  W WG ++ GQLG G  I+ + +P+ V     + I  V+F
Sbjct: 1011 --GYHSLGIDKEGKTWAWGYNQFGQLGNGT-ISNSSIPTPVAFNLSQVISSVTF 1061


>gi|74190775|dbj|BAE28179.1| unnamed protein product [Mus musculus]
          Length = 370

 Score = 89.4 bits (220), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 84/275 (30%), Positives = 124/275 (45%), Gaps = 37/275 (13%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAW 88
           V+S G  + G LG+P            P  +  L   V  V+AG  H+LA T  G+V+ W
Sbjct: 122 VLSCGSNAFGQLGVPHGPR----KCVVPQAIECLREKVVCVAAGLRHALATTATGSVFQW 177

Query: 89  GR---NNEVQLGRGA-LESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWG 144
           G    ++  +L  G  L    T  +P RV GL+      A A    S+++ D G L+VWG
Sbjct: 178 GTGLASSGRRLCPGQNLPLFLTAKEPSRVTGLENSTAVCAVAGSDHSASLTDTGELYVWG 237

Query: 145 KSKRGQLGLGKDITEAIVPSRVEA--LAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADG 202
           ++K GQ  L        +P R+EA     EK+  V  GW H +A+TE GK+F WG  AD 
Sbjct: 238 RNKHGQ--LASRAVFLPLPQRIEAHYFQDEKVTAVWSGWTHLVAKTETGKVFTWG-RAD- 293

Query: 203 RIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVE 262
             G LG+ LE       +++ S                L  +G +     P+      + 
Sbjct: 294 -YGQLGRRLEPPEAQKPVEQDS---------------SLAFQGPQNSVPSPL----HCLT 333

Query: 263 GVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLG 297
           G    +I+CG +H+L + R+    S G N +G  G
Sbjct: 334 G--ATEISCGSEHNLAVIRDKC-CSWGWNEHGMCG 365



 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 92/375 (24%), Positives = 150/375 (40%), Gaps = 65/375 (17%)

Query: 24  ASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSD--VTSVSAGHYHSLAVTN 81
           ++   + ++G  S G LGL     G   D + P ++        + SV+ G  HS  VT+
Sbjct: 12  SAAAVLFAWGANSYGQLGL-----GHKEDVFLPQQLSDFCQAGCIKSVTGGGGHSAVVTD 66

Query: 82  NGAVWAWGRNNEVQLGRGALES--RATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGS 139
            G ++  G N + QLG G  E   R T   P R   + QV     F     +  + + G 
Sbjct: 67  GGDLFVCGLNKDGQLGLGHTEEVLRFTICKPLRGCPIRQVACGWDF-----TIMLTEKGQ 121

Query: 140 LWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGW--G 197
           +   G +  GQLG+     + +VP  +E L  EK+V V+ G  HALA T  G +F W  G
Sbjct: 122 VLSCGSNAFGQLGVPHGPRKCVVPQAIECLR-EKVVCVAAGLRHALATTATGSVFQWGTG 180

Query: 198 YSADGRIGNLGKAL----------ESSPLDSNIDRSSESDQEISSSTIEKAQKLV----- 242
            ++ GR    G+ L            + L+++    + +  + S+S  +  +  V     
Sbjct: 181 LASSGRRLCPGQNLPLFLTAKEPSRVTGLENSTAVCAVAGSDHSASLTDTGELYVWGRNK 240

Query: 243 -SEGMEKEKYMPIIW--EPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGRE 299
             +   +  ++P+    E    +  +V  +  G+ H +     G + + G   YGQLGR 
Sbjct: 241 HGQLASRAVFLPLPQRIEAHYFQDEKVTAVWSGWTHLVAKTETGKVFTWGRADYGQLGRR 300

Query: 300 ----------KQDMGMF----------PVDINFHPVSISSGLGHSLAICEVRSSNVTGGA 339
                     +QD  +           P+        IS G  H+LA+  +R        
Sbjct: 301 LEPPEAQKPVEQDSSLAFQGPQNSVPSPLHCLTGATEISCGSEHNLAV--IRDK------ 352

Query: 340 RGIVSWGWNRSSQLG 354
               SWGWN     G
Sbjct: 353 --CCSWGWNEHGMCG 365



 Score = 65.5 bits (158), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 66/247 (26%), Positives = 102/247 (41%), Gaps = 56/247 (22%)

Query: 129 VVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVK-VSFGWGHALAQ 187
             S  +     L+ WG +  GQLGLG    +  +P ++        +K V+ G GH+   
Sbjct: 6   CASETVSAAAVLFAWGANSYGQLGLGHK-EDVFLPQQLSDFCQAGCIKSVTGGGGHSAVV 64

Query: 188 TEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGME 247
           T+ G LF  G + DG++G LG                   +E+   TI K          
Sbjct: 65  TDGGDLFVCGLNKDGQLG-LGHT-----------------EEVLRFTICKP--------- 97

Query: 248 KEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLG-REKQDMGMF 306
                        + G  +  +ACG+D +++L   G +LSCGSN +GQLG        + 
Sbjct: 98  -------------LRGCPIRQVACGWDFTIMLTEKGQVLSCGSNAFGQLGVPHGPRKCVV 144

Query: 307 PVDINF---HPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGP-DNVP 362
           P  I       V +++GL H+LA      +  TG    +  WG   +S   R+ P  N+P
Sbjct: 145 PQAIECLREKVVCVAAGLRHALA------TTATG---SVFQWGTGLASSGRRLCPGQNLP 195

Query: 363 LVVEGLE 369
           L +   E
Sbjct: 196 LFLTAKE 202



 Score = 58.2 bits (139), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 82/311 (26%), Positives = 124/311 (39%), Gaps = 50/311 (16%)

Query: 76  SLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSA-I 134
           S  V+    ++AWG N+  QLG G  E       P+++    Q     +   G   SA +
Sbjct: 8   SETVSAAAVLFAWGANSYGQLGLGHKEDVFL---PQQLSDFCQAGCIKSVTGGGGHSAVV 64

Query: 135 GDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLF 194
            D G L+V G +K GQLGLG    E +  +  + L G  I +V+ GW   +  TE G++ 
Sbjct: 65  TDGGDLFVCGLNKDGQLGLGH-TEEVLRFTICKPLRGCPIRQVACGWDFTIMLTEKGQVL 123

Query: 195 GWGYSADGRIGNLGKALESSPLDSNIDRSSESDQE----------------ISSSTIEKA 238
             G +A G++G     +   P    + ++ E  +E                 + S  +  
Sbjct: 124 SCGSNAFGQLG-----VPHGPRKCVVPQAIECLREKVVCVAAGLRHALATTATGSVFQWG 178

Query: 239 QKLVSEG--MEKEKYMPIIW---EPFLVEGVEVVDIAC---GFDHSLVLGRNGVLLSCGS 290
             L S G  +   + +P+     EP  V G+E     C   G DHS  L   G L   G 
Sbjct: 179 TGLASSGRRLCPGQNLPLFLTAKEPSRVTGLENSTAVCAVAGSDHSASLTDTGELYVWGR 238

Query: 291 NVYGQLGREKQDMGMFPVDINFHP------VSISSGLGHSLAICEVRSSNVTGGARGIVS 344
           N +GQL      + + P  I  H        ++ SG  H +A  E            + +
Sbjct: 239 NKHGQLASRAVFLPL-PQRIEAHYFQDEKVTAVWSGWTHLVAKTETGK---------VFT 288

Query: 345 WGWNRSSQLGR 355
           WG     QLGR
Sbjct: 289 WGRADYGQLGR 299


>gi|410208768|gb|JAA01603.1| regulator of chromosome condensation (RCC1) and BTB (POZ) domain
           containing protein 2 [Pan troglodytes]
 gi|410264078|gb|JAA20005.1| regulator of chromosome condensation (RCC1) and BTB (POZ) domain
           containing protein 2 [Pan troglodytes]
 gi|410293804|gb|JAA25502.1| regulator of chromosome condensation (RCC1) and BTB (POZ) domain
           containing protein 2 [Pan troglodytes]
 gi|410338541|gb|JAA38217.1| regulator of chromosome condensation (RCC1) and BTB (POZ) domain
           containing protein 2 [Pan troglodytes]
          Length = 527

 Score = 89.4 bits (220), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 54/162 (33%), Positives = 88/162 (54%), Gaps = 5/162 (3%)

Query: 62  LPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNV 121
           L   V  V+ G +HS+A+  +G V+AWG NN  Q+G G+  ++ T   P++V     +  
Sbjct: 126 LIKQVVEVACGSHHSMALAADGEVFAWGYNNCGQVGSGSTANQPT---PRKVTNCLHIKR 182

Query: 122 CAAFASGVVSS-AIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFG 180
               A G  SS A+ D+G ++ WG +  GQLGLG +  + + P RV AL    + ++  G
Sbjct: 183 VVGIACGQTSSMAVLDNGEVYGWGYNGNGQLGLGNNGNQ-LTPVRVAALHSVCVNQIVCG 241

Query: 181 WGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDR 222
           + H LA T++G L+ WG +  G++G   K    SP    +++
Sbjct: 242 YAHTLALTDEGLLYAWGANTYGQLGTGNKNNLLSPAHIMVEK 283



 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 72/293 (24%), Positives = 117/293 (39%), Gaps = 67/293 (22%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLP-SDVTSVSAGH-YHSLAVTNNGAVW 86
           V  FG      LG     TG       P ++ GL    + S+S G   H L  T +G V+
Sbjct: 43  VFVFGLNYSNCLG-----TGDNQSTLVPKKLEGLCGKKIKSLSYGSGPHVLLSTEDGVVY 97

Query: 87  AWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVV---------SSAIGDD 137
           AWG N   QLG G              +G+  V VC       V         S A+  D
Sbjct: 98  AWGHNGYSQLGNGTTN-----------QGIAPVQVCTNLLIKQVVEVACGSHHSMALAAD 146

Query: 138 GSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWG 197
           G ++ WG +  GQ+G G    +         L  +++V ++ G   ++A  ++G+++GWG
Sbjct: 147 GEVFAWGYNNCGQVGSGSTANQPTPRKVTNCLHIKRVVGIACGQTSSMAVLDNGEVYGWG 206

Query: 198 YSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWE 257
           Y+ +G++G      + +P+             +++                         
Sbjct: 207 YNGNGQLGLGNNGNQLTPV------------RVAA------------------------- 229

Query: 258 PFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDI 310
              +  V V  I CG+ H+L L   G+L + G+N YGQLG   ++  + P  I
Sbjct: 230 ---LHSVCVNQIVCGYAHTLALTDEGLLYAWGANTYGQLGTGNKNNLLSPAHI 279



 Score = 70.9 bits (172), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 77/293 (26%), Positives = 129/293 (44%), Gaps = 60/293 (20%)

Query: 76  SLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCA-AFASGVVSSAI 134
           +L VT+N  V+ +G N    LG G  +S      PK++EGL    + + ++ SG      
Sbjct: 34  ALYVTDNDEVFVFGLNYSNCLGTGDNQSTLV---PKKLEGLCGKKIKSLSYGSGPHVLLS 90

Query: 135 GDDGSLWVWGKSKRGQLGLGKDITEAIVPSRV-EALAGEKIVKVSFGWGHALAQTEDGKL 193
            +DG ++ WG +   QLG G    + I P +V   L  +++V+V+ G  H++A   DG++
Sbjct: 91  TEDGVVYAWGHNGYSQLGNGT-TNQGIAPVQVCTNLLIKQVVEVACGSHHSMALAADGEV 149

Query: 194 FGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMP 253
           F WGY+  G++G+   A + +P                        + V+  +  ++   
Sbjct: 150 FAWGYNNCGQVGSGSTANQPTP------------------------RKVTNCLHIKR--- 182

Query: 254 IIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDI-NF 312
                       VV IACG   S+ +  NG +   G N  GQLG       + PV +   
Sbjct: 183 ------------VVGIACGQTSSMAVLDNGEVYGWGYNGNGQLGLGNNGNQLTPVRVAAL 230

Query: 313 HPVSIS---SGLGHSLAICEVRSSNVTGGARGIV-SWGWNRSSQLGRMGPDNV 361
           H V ++    G  H+LA+ +           G++ +WG N   QLG    +N+
Sbjct: 231 HSVCVNQIVCGYAHTLALTD----------EGLLYAWGANTYGQLGTGNKNNL 273


>gi|387541824|gb|AFJ71539.1| E3 ISG15--protein ligase HERC5 [Macaca mulatta]
          Length = 1023

 Score = 89.4 bits (220), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 70/230 (30%), Positives = 112/230 (48%), Gaps = 24/230 (10%)

Query: 24  ASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVP-------GLPSDVTSVSAGHYHS 76
           + G  + ++G    G LG+        G  +  T  P       G+P  +  +SAG  HS
Sbjct: 153 SKGGELFAWGQNLHGQLGV--------GRTFPSTTTPQIVEHLAGVP--LAQISAGEAHS 202

Query: 77  LAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGD 136
           +A++ +G +++WG+N   QLG G  ES+   + P  +E LD   V      G  S+ +  
Sbjct: 203 MALSMSGNIYSWGKNEFGQLGLGHTESK---DSPSLIEALDNQKVEFLACGGSHSALLTQ 259

Query: 137 DGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTED-GKLFG 195
           DG L+ +G  K GQLG      E + P  V  L G ++ +++ G  H LA   D GK+F 
Sbjct: 260 DGLLFTFGAGKHGQLGHNSTQNE-LRPCLVAELVGNRVTQIACGRWHTLAYVSDFGKVFS 318

Query: 196 WGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEG 245
           +G   DG++GN G   +  PL   +  SS  + ++ S T EK   +++ G
Sbjct: 319 FGSGKDGQLGNGGTLDQLIPLPVKV--SSSEELKLESHTSEKELIMIAGG 366



 Score = 80.5 bits (197), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 81/281 (28%), Positives = 121/281 (43%), Gaps = 47/281 (16%)

Query: 66  VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAF 125
           +  ++ G YHSLA++  G ++AWG+N   QLG G      T   P+ VE L  V +    
Sbjct: 139 IIQITCGDYHSLALSKGGELFAWGQNLHGQLGVGRTFPSTT--TPQIVEHLAGVPLAQIS 196

Query: 126 ASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHAL 185
           A    S A+   G+++ WGK++ GQLGLG   ++   PS +EAL  +K+  ++ G  H+ 
Sbjct: 197 AGEAHSMALSMSGNIYSWGKNEFGQLGLGHTESKD-SPSLIEALDNQKVEFLACGGSHSA 255

Query: 186 AQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEG 245
             T+DG LF +G    G++G+     E  P                         LV+E 
Sbjct: 256 LLTQDGLLFTFGAGKHGQLGHNSTQNELRPC------------------------LVAE- 290

Query: 246 MEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRN-GVLLSCGSNVYGQLGREKQDMG 304
                          + G  V  IACG  H+L    + G + S GS   GQLG       
Sbjct: 291 ---------------LVGNRVTQIACGRWHTLAYVSDFGKVFSFGSGKDGQLGNGGTLDQ 335

Query: 305 MFPVDINFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSW 345
           + P+ +    VS S  L       E     + GG + I+ W
Sbjct: 336 LIPLPVK---VSSSEELKLESHTSEKELIMIAGGNQSILLW 373



 Score = 44.3 bits (103), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 36/120 (30%), Positives = 60/120 (50%), Gaps = 16/120 (13%)

Query: 260 LVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFH----PV 315
           +++  +++ I CG  HSL L + G L + G N++GQLG  +         I  H    P+
Sbjct: 133 ILQEKKIIQITCGDYHSLALSKGGELFAWGQNLHGQLGVGRTFPSTTTPQIVEHLAGVPL 192

Query: 316 S-ISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQ--LGRMGPDNVPLVVEGLEGES 372
           + IS+G  HS+A+      +++G    I SWG N   Q  LG     + P ++E L+ + 
Sbjct: 193 AQISAGEAHSMAL------SMSG---NIYSWGKNEFGQLGLGHTESKDSPSLIEALDNQK 243



 Score = 43.9 bits (102), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 39/146 (26%), Positives = 71/146 (48%), Gaps = 19/146 (13%)

Query: 169 LAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDR------ 222
           L  +KI++++ G  H+LA ++ G+LF WG +  G++G +G+   S+     ++       
Sbjct: 134 LQEKKIIQITCGDYHSLALSKGGELFAWGQNLHGQLG-VGRTFPSTTTPQIVEHLAGVPL 192

Query: 223 SSESDQEISSSTIEKAQKLVS----------EGMEKEKYMPIIWEPFLVEGVEVVDIACG 272
           +  S  E  S  +  +  + S           G  + K  P + E    + VE   +ACG
Sbjct: 193 AQISAGEAHSMALSMSGNIYSWGKNEFGQLGLGHTESKDSPSLIEALDNQKVEF--LACG 250

Query: 273 FDHSLVLGRNGVLLSCGSNVYGQLGR 298
             HS +L ++G+L + G+  +GQLG 
Sbjct: 251 GSHSALLTQDGLLFTFGAGKHGQLGH 276


>gi|444911273|ref|ZP_21231448.1| hypothetical protein D187_02792 [Cystobacter fuscus DSM 2262]
 gi|444718031|gb|ELW58847.1| hypothetical protein D187_02792 [Cystobacter fuscus DSM 2262]
          Length = 476

 Score = 89.4 bits (220), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 99/344 (28%), Positives = 151/344 (43%), Gaps = 66/344 (19%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAW 88
           + ++G    G LG P +     G+   P  VPGL + V +V AG   +L +   G  WAW
Sbjct: 141 LFTWGGNDAGQLGRPDA-----GNTPHPLPVPGL-APVRAVVAGPSSTLVLLEEGGAWAW 194

Query: 89  GRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKR 148
           G      L RG + +R   + P RVE    V   A  AS  +   +  DG++   G + +
Sbjct: 195 G-----TLPRGLVPARKEPSTPTRVESPGPVVDVALGASHAL--LLLADGTVLAVGSNTK 247

Query: 149 GQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLG 208
           GQLGLG        P+RV  L+   IV+V+ G  H++A   DG +F WG + DG++GN  
Sbjct: 248 GQLGLGS-TAPVEAPTRVPGLS--DIVRVAVGTAHSVALRRDGTVFTWGDNGDGQLGN-- 302

Query: 209 KALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGV-EVV 267
             L+++P                                         EP  V  + +VV
Sbjct: 303 GELDATPHP---------------------------------------EPLEVAHLGQVV 323

Query: 268 DIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFHPVSISSGLGHSLAI 327
           DIA G  H L LG +G + + G  + GQLG  K  M    +     PV +   +  ++A+
Sbjct: 324 DIATGRGHVLALGADGRVRAWGLGMSGQLGHGKSGM----LGSRAQPVDVLD-VTDAVAV 378

Query: 328 CEVRSSNVTGGARGIV-SWGWNRSSQL--GRMGPDNVPLVVEGL 368
             + +      A G + +WG N ++QL  G +     P+ V+GL
Sbjct: 379 SALNNVGFALSASGTLWAWGQNSNAQLGDGSLAERPRPIQVQGL 422



 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 89/281 (31%), Positives = 128/281 (45%), Gaps = 32/281 (11%)

Query: 42  LPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGAL 101
           LP  L     +   PTRV   P  V  V+ G  H+L +  +G V A G N + QLG G  
Sbjct: 197 LPRGLVPARKEPSTPTRVES-PGPVVDVALGASHALLLLADGTVLAVGSNTKGQLGLG-- 253

Query: 102 ESRATWNDPKRVEGL-DQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGK-DITE 159
            S A    P RV GL D V V    A  V   A+  DG+++ WG +  GQLG G+ D T 
Sbjct: 254 -STAPVEAPTRVPGLSDIVRVAVGTAHSV---ALRRDGTVFTWGDNGDGQLGNGELDATP 309

Query: 160 AIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGN-----LG-KALES 213
              P  V  L   ++V ++ G GH LA   DG++  WG    G++G+     LG +A   
Sbjct: 310 HPEPLEVAHLG--QVVDIATGRGHVLALGADGRVRAWGLGMSGQLGHGKSGMLGSRAQPV 367

Query: 214 SPLDSNIDRSSESDQEI-----SSSTI----EKAQKLVSEGMEKEKYMPIIWEPFLVEGV 264
             LD     +  +   +     +S T+    + +   + +G   E+  PI      V+G+
Sbjct: 368 DVLDVTDAVAVSALNNVGFALSASGTLWAWGQNSNAQLGDGSLAERPRPI-----QVQGL 422

Query: 265 -EVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMG 304
             V  +A G  H+L   R+G  L+ G+N  GQLG      G
Sbjct: 423 GPVRAVAAGSLHTLACTRDGDCLAWGANHDGQLGASTPSEG 463



 Score = 72.8 bits (177), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 85/295 (28%), Positives = 122/295 (41%), Gaps = 70/295 (23%)

Query: 67  TSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFA 126
           TS++AG  HS A+  +G ++ WG N+  QLGR           P  V GL  V    A  
Sbjct: 124 TSLAAGLSHSAAL-RDGQLFTWGGNDAGQLGR---PDAGNTPHPLPVPGLAPVRAVVAGP 179

Query: 127 SGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALA 186
           S  +   + ++G  W WG   RG +   K   E   P+RVE+     +V V+ G  HAL 
Sbjct: 180 SSTL--VLLEEGGAWAWGTLPRGLVPARK---EPSTPTRVESPG--PVVDVALGASHALL 232

Query: 187 QTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGM 246
              DG +   G +  G++G LG                      S++ +E          
Sbjct: 233 LLADGTVLAVGSNTKGQLG-LG----------------------STAPVEA--------- 260

Query: 247 EKEKYMPIIWEPFLVEGV-EVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGM 305
                      P  V G+ ++V +A G  HS+ L R+G + + G N  GQLG  + D   
Sbjct: 261 -----------PTRVPGLSDIVRVAVGTAHSVALRRDGTVFTWGDNGDGQLGNGELDATP 309

Query: 306 FPVDINF----HPVSISSGLGHSLAICEVRSSNVTGGARGIV-SWGWNRSSQLGR 355
            P  +        V I++G GH LA+          GA G V +WG   S QLG 
Sbjct: 310 HPEPLEVAHLGQVVDIATGRGHVLAL----------GADGRVRAWGLGMSGQLGH 354



 Score = 51.2 bits (121), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 61/216 (28%), Positives = 86/216 (39%), Gaps = 32/216 (14%)

Query: 166 VEALAGEKIVKVSFGWGHALAQ-------TEDGKLFGWGYSADGRIGNLGKALESSPLDS 218
           V+A     + +V F WG +LA          DG+LF WG +  G++G         PL  
Sbjct: 107 VDAAGNTGVAEVRFRWGTSLAAGLSHSAALRDGQLFTWGGNDAGQLGRPDAGNTPHPLPV 166

Query: 219 NIDRSSESDQEISSSTIEKAQKLVSEG------MEKEKYMPIIWEPFLVEGVE----VVD 268
                  +     SST+     L+ EG            +P   EP     VE    VVD
Sbjct: 167 PGLAPVRAVVAGPSSTL----VLLEEGGAWAWGTLPRGLVPARKEPSTPTRVESPGPVVD 222

Query: 269 IACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDIN--FHPVSISSGLGHSLA 326
           +A G  H+L+L  +G +L+ GSN  GQLG         P  +      V ++ G  HS+A
Sbjct: 223 VALGASHALLLLADGTVLAVGSNTKGQLGLGSTAPVEAPTRVPGLSDIVRVAVGTAHSVA 282

Query: 327 ICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPDNVP 362
           +   R          + +WG N   QLG    D  P
Sbjct: 283 L---RRDGT------VFTWGDNGDGQLGNGELDATP 309



 Score = 39.7 bits (91), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 33/86 (38%), Positives = 46/86 (53%), Gaps = 7/86 (8%)

Query: 12  VNVLTSRIFMRSASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSA 71
           V+ L +  F  SASGT + ++G  S   LG      G   +   P +V GL   V +V+A
Sbjct: 378 VSALNNVGFALSASGT-LWAWGQNSNAQLG-----DGSLAERPRPIQVQGL-GPVRAVAA 430

Query: 72  GHYHSLAVTNNGAVWAWGRNNEVQLG 97
           G  H+LA T +G   AWG N++ QLG
Sbjct: 431 GSLHTLACTRDGDCLAWGANHDGQLG 456


>gi|307176782|gb|EFN66182.1| Probable E3 ubiquitin-protein ligase HERC2 [Camponotus floridanus]
          Length = 4802

 Score = 89.4 bits (220), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 80/284 (28%), Positives = 126/284 (44%), Gaps = 55/284 (19%)

Query: 19   IFMRSASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDV---TSVSAGHYH 75
            +F+ S  G  + + G+G+ G LGL     G   +  EP  +P L   V    +V +G  H
Sbjct: 3006 LFIVSQEG-KLYACGEGTNGRLGL-----GDDNNVCEPKPIPFLSQFVIKKVAVHSGGKH 3059

Query: 76   SLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIG 135
            +LA+T +G V++WG   + +LG G   +  + + PK +E L    +         S+AI 
Sbjct: 3060 ALALTQDGKVFSWGEGEDGKLGHG---NNMSLDKPKLIETLKSKRIRDIACGSGHSAAIA 3116

Query: 136  DDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGW--GHALAQTEDGKL 193
             +G L+ WG  + G+LG G  +T+A  P  V+ L G ++V+V+ G      +A T DG +
Sbjct: 3117 SNGELYTWGLGEYGRLGHGDTVTQA-RPKLVQTLVGHRVVQVACGSRDAQTMALTTDGCV 3175

Query: 194  FGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMP 253
            + WG   DG  G LG+                                   G     Y P
Sbjct: 3176 YSWG---DGDFGKLGR-----------------------------------GGSDGCYTP 3197

Query: 254  IIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLG 297
            ++ E     G+ VV + CG   SL L + G + + G   Y +LG
Sbjct: 3198 LVVERL--NGLGVVQVECGAQFSLALTKYGEVWTWGKGDYFRLG 3239



 Score = 88.6 bits (218), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 80/302 (26%), Positives = 132/302 (43%), Gaps = 29/302 (9%)

Query: 50  GGDAYEPTRVPGLPSDVTSVSAGH---YHSLAVTNNGAVWAWGRNNEVQLGRGALESRAT 106
           G +   P RV G    + ++ A H    H LA+T +G V++WG  +  +LG G      +
Sbjct: 492 GSETQYPQRVHGFSDKLVTMIASHSDGKHHLALTQDGCVYSWGNGDGGRLGHG---DTVS 548

Query: 107 WNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRV 166
           +++PK +E L + N+         S+A+   G L+ WG+   G+LG G +  + ++P+ V
Sbjct: 549 YDEPKLIEALLEKNIVFIACGSTYSAALSVSGELYTWGRGNYGRLGHG-NFDDVMIPTLV 607

Query: 167 EALAGEKIVKVSFGWG--HALAQTEDGKLFGWGYSADGRIGNLGKALESSP------LDS 218
             L G  +V V+ G G    L  T  G +F WG    G++G  G     +P      LD 
Sbjct: 608 TTLKGHTVVHVACGSGDSQTLCVTASGIVFSWGDGDYGKLGRGGTDGSKTPKIVDKLLDI 667

Query: 219 NIDRSSESDQEISSSTI--------EKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIA 270
           N+ +     Q  ++ T         +     +  G E+    P I E       ++ D++
Sbjct: 668 NVVKVFCGSQFSAALTAHGEVYTWGKGDTYRLGHGSEEHVRYPKIIESL--RDKKIKDLS 725

Query: 271 CGFDHSLVLGRNGVLLSCGSNVYGQ----LGREKQDMGMFPVDINFHPVSISSGLGHSLA 326
            G  H LVL  +  +   G N YGQ    LG    +  + P   +   + ++SG   S A
Sbjct: 726 VGATHILVLTEDQFVYGWGRNDYGQIDPTLGSVISEPTLCPTLSSKTVIGLASGPTQSFA 785

Query: 327 IC 328
            C
Sbjct: 786 WC 787



 Score = 84.7 bits (208), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 99/368 (26%), Positives = 161/368 (43%), Gaps = 78/368 (21%)

Query: 19   IFMRSASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDV-------TSVSA 71
            +F  +A G  V S G G+ G LG       +GG   +   +P L   +        +VS+
Sbjct: 3988 LFAVTADG-KVYSTGYGAAGRLG-------IGGT--DSVMIPTLLESIQHVFIKKVAVSS 4037

Query: 72   GHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVS 131
            G  H LA+++ G V++WG  ++ +LG G   ++ +++ PK +E L  V +      G  S
Sbjct: 4038 GGKHCLALSSEGHVYSWGEGDDGKLGHG---NKMSYDRPKLIEDLLGVEIIDIACGGHHS 4094

Query: 132  SAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHA--LAQTE 189
            +AI   G L+ WGK + G+LG G D  + + P  VEAL   K++ V+ G G A  L  T+
Sbjct: 4095 AAITSAGWLYTWGKGRYGRLGHG-DSDDQLRPKVVEALQDYKVIDVACGSGDAQTLCVTD 4153

Query: 190  DGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKE 249
            D  ++ WG   DG  G LG+                                 S+G +  
Sbjct: 4154 DDNVWSWG---DGDYGKLGRG-------------------------------GSDGCK-- 4177

Query: 250  KYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVD 309
              +P+  +     G+ V+ + CG   S+ L R+G + + G   Y +LG    D    P  
Sbjct: 4178 --VPLKIDSL--AGLGVIKVECGSQFSVALTRSGAVYTWGKGDYHRLGHGTDDHVRRPRK 4233

Query: 310  INF----HPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQL--GRMGPDNVPL 363
            +        +SI++G  H +A C  +          + +WG N   QL  G     + P 
Sbjct: 4234 VAALQGKKIISIATGSLHCVA-CSDKGE--------VFTWGDNDEGQLGDGTTSALHRPR 4284

Query: 364  VVEGLEGE 371
            +V  L+G+
Sbjct: 4285 LVHALQGK 4292



 Score = 74.3 bits (181), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 48/141 (34%), Positives = 73/141 (51%), Gaps = 4/141 (2%)

Query: 75   HSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAI 134
             ++A+T +G V++WG  +  +LGRG  +   T   P  VE L+ + V         S A+
Sbjct: 3165 QTMALTTDGCVYSWGDGDFGKLGRGGSDGCYT---PLVVERLNGLGVVQVECGAQFSLAL 3221

Query: 135  GDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLF 194
               G +W WGK    +LG G D      P+ VE L G+KIV V+ G  H LA T+ G+++
Sbjct: 3222 TKYGEVWTWGKGDYFRLGHGND-HHVRKPTLVEGLRGKKIVHVAVGALHCLAVTDTGQVY 3280

Query: 195  GWGYSADGRIGNLGKALESSP 215
             WG +  G+ GN   ++   P
Sbjct: 3281 AWGDNDHGQQGNGTTSVNRKP 3301



 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 78/297 (26%), Positives = 121/297 (40%), Gaps = 59/297 (19%)

Query: 82   NGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLW 141
            +GA++ WG N+  QLG   LE       P   E L  +             A+  DG ++
Sbjct: 3942 SGAIYGWGHNHRGQLG--GLEGPKV-KLPAPCESLSALRPIQLAGGEQTLFAVTADGKVY 3998

Query: 142  VWGKSKRGQLGLGKDITEAIVPSRVEALAGE--KIVKVSFGWGHALAQTEDGKLFGWGYS 199
              G    G+LG+G      ++P+ +E++     K V VS G  H LA + +G ++ WG  
Sbjct: 3999 STGYGAAGRLGIG-GTDSVMIPTLLESIQHVFIKKVAVSSGGKHCLALSSEGHVYSWGEG 4057

Query: 200  ADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPF 259
             DG++G+  K     P                        KL+ + +             
Sbjct: 4058 DDGKLGHGNKMSYDRP------------------------KLIEDLL------------- 4080

Query: 260  LVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDI----NFHPV 315
               GVE++DIACG  HS  +   G L + G   YG+LG    D  + P  +    ++  +
Sbjct: 4081 ---GVEIIDIACGGHHSAAITSAGWLYTWGKGRYGRLGHGDSDDQLRPKVVEALQDYKVI 4137

Query: 316  SISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPD--NVPLVVEGLEG 370
             ++ G G +  +C     NV        SWG     +LGR G D   VPL ++ L G
Sbjct: 4138 DVACGSGDAQTLCVTDDDNVW-------SWGDGDYGKLGRGGSDGCKVPLKIDSLAG 4187



 Score = 68.2 bits (165), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 82/298 (27%), Positives = 116/298 (38%), Gaps = 65/298 (21%)

Query: 84   AVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVW 143
            AV+ WG N++ QLG G   S+     P   E L ++              +  +G L+  
Sbjct: 2962 AVYVWGLNDKDQLG-GLKGSKIKL--PVYSEVLSKLKPIHIAGGSKTLFIVSQEGKLYAC 3018

Query: 144  GKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWG--HALAQTEDGKLFGWGYSAD 201
            G+   G+LGLG D      P  +  L+   I KV+   G  HALA T+DGK+F WG   D
Sbjct: 3019 GEGTNGRLGLGDD-NNVCEPKPIPFLSQFVIKKVAVHSGGKHALALTQDGKVFSWGEGED 3077

Query: 202  GRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLV 261
            G++G+                                       M  +K       P L+
Sbjct: 3078 GKLGH------------------------------------GNNMSLDK-------PKLI 3094

Query: 262  EGVE---VVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFHPVSIS 318
            E ++   + DIACG  HS  +  NG L + G   YG+LG                P  + 
Sbjct: 3095 ETLKSKRIRDIACGSGHSAAIASNGELYTWGLGEYGRLGHGD-------TVTQARPKLVQ 3147

Query: 319  SGLGHSL--AICEVRSSNVTGGARG--IVSWGWNRSSQLGRMGPD--NVPLVVEGLEG 370
            + +GH +    C  R +          + SWG     +LGR G D    PLVVE L G
Sbjct: 3148 TLVGHRVVQVACGSRDAQTMALTTDGCVYSWGDGDFGKLGRGGSDGCYTPLVVERLNG 3205



 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 51/158 (32%), Positives = 74/158 (46%), Gaps = 12/158 (7%)

Query: 31   SFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPS-DVTSVSAGHYHSLAVTNNGAVWAWG 89
            S+GDG  G LG      G       P ++  L    V  V  G   S+A+T +GAV+ WG
Sbjct: 4159 SWGDGDYGKLG-----RGGSDGCKVPLKIDSLAGLGVIKVECGSQFSVALTRSGAVYTWG 4213

Query: 90   RNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRG 149
            + +  +LG G  +       P++V  L    + +     +   A  D G ++ WG +  G
Sbjct: 4214 KGDYHRLGHGTDDHV---RRPRKVAALQGKKIISIATGSLHCVACSDKGEVFTWGDNDEG 4270

Query: 150  QLGLGKDITEAI-VPSRVEALAGEKIVKVSFGWGHALA 186
            QLG G   T A+  P  V AL G+KI +V+ G  H LA
Sbjct: 4271 QLGDG--TTSALHRPRLVHALQGKKITRVACGSAHTLA 4306



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 75/309 (24%), Positives = 126/309 (40%), Gaps = 55/309 (17%)

Query: 69   VSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQ--VNVCAAFA 126
            ++ G      V+  G ++A G     +LG G   +     +PK +  L Q  +   A  +
Sbjct: 2999 IAGGSKTLFIVSQEGKLYACGEGTNGRLGLGDDNNVC---EPKPIPFLSQFVIKKVAVHS 3055

Query: 127  SGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALA 186
             G  + A+  DG ++ WG+ + G+LG G +++    P  +E L  ++I  ++ G GH+ A
Sbjct: 3056 GGKHALALTQDGKVFSWGEGEDGKLGHGNNMS-LDKPKLIETLKSKRIRDIACGSGHSAA 3114

Query: 187  QTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGM 246
               +G+L+ WG    GR+G+     ++ P                    +  Q LV    
Sbjct: 3115 IASNGELYTWGLGEYGRLGHGDTVTQARP--------------------KLVQTLV---- 3150

Query: 247  EKEKYMPIIWEPFLVEGVEVVDIACGFD--HSLVLGRNGVLLSCGSNVYGQLGREKQDMG 304
                            G  VV +ACG     ++ L  +G + S G   +G+LGR   D  
Sbjct: 3151 ----------------GHRVVQVACGSRDAQTMALTTDGCVYSWGDGDFGKLGRGGSDGC 3194

Query: 305  MFPVDINFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPDNV--P 362
              P+      V   +GLG     C  + S        + +WG     +LG     +V  P
Sbjct: 3195 YTPL-----VVERLNGLGVVQVECGAQFSLALTKYGEVWTWGKGDYFRLGHGNDHHVRKP 3249

Query: 363  LVVEGLEGE 371
             +VEGL G+
Sbjct: 3250 TLVEGLRGK 3258



 Score = 61.6 bits (148), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 82/324 (25%), Positives = 131/324 (40%), Gaps = 63/324 (19%)

Query: 62   LPSDVTSVSA--------GHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRV 113
            LP+   S+SA        G     AVT +G V++ G     +LG G  +S      P  +
Sbjct: 3966 LPAPCESLSALRPIQLAGGEQTLFAVTADGKVYSTGYGAAGRLGIGGTDSVMI---PTLL 4022

Query: 114  EGLDQVNV--CAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAG 171
            E +  V +   A  + G    A+  +G ++ WG+   G+LG G  ++    P  +E L G
Sbjct: 4023 ESIQHVFIKKVAVSSGGKHCLALSSEGHVYSWGEGDDGKLGHGNKMSYD-RPKLIEDLLG 4081

Query: 172  EKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEIS 231
             +I+ ++ G  H+ A T  G L+ WG    GR G LG                +SD ++ 
Sbjct: 4082 VEIIDIACGGHHSAAITSAGWLYTWG---KGRYGRLGHG--------------DSDDQLR 4124

Query: 232  SSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGF--DHSLVLGRNGVLLSCG 289
               +E  Q                         +V+D+ACG     +L +  +  + S G
Sbjct: 4125 PKVVEALQD-----------------------YKVIDVACGSGDAQTLCVTDDDNVWSWG 4161

Query: 290  SNVYGQLGREKQDMGMFPVDINFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNR 349
               YG+LGR   D    P+ I+       +GLG     C  + S     +  + +WG   
Sbjct: 4162 DGDYGKLGRGGSDGCKVPLKIDS-----LAGLGVIKVECGSQFSVALTRSGAVYTWGKGD 4216

Query: 350  SSQLGRMGPDNV--PLVVEGLEGE 371
              +LG    D+V  P  V  L+G+
Sbjct: 4217 YHRLGHGTDDHVRRPRKVAALQGK 4240


>gi|390479661|ref|XP_002762827.2| PREDICTED: LOW QUALITY PROTEIN: X-linked retinitis pigmentosa
           GTPase regulator, partial [Callithrix jacchus]
          Length = 817

 Score = 89.4 bits (220), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 80/281 (28%), Positives = 137/281 (48%), Gaps = 26/281 (9%)

Query: 32  FGDGSQGALGLPTSLTGVGGDAYEPTRVPGL-PSDVTSVSAGHYHSLAVTNNGAVWAWGR 90
           FG  + G LGL     G      +PT V  L P  V   + G  H+L  T  G V+A G 
Sbjct: 59  FGSNNWGQLGL-----GSKSAVSKPTCVKALKPEKVKLAACGRNHTLVSTEGGNVYATGG 113

Query: 91  NNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGV-VSSAIGDDGSLWVWGKSKRG 149
           N+E QLG G  E R T++   RV      +     ++G   S+A+ +DG L++WG +  G
Sbjct: 114 NDEGQLGLGDTEERTTFH---RVSFFTSQHKIKQLSAGSNTSAALTEDGRLFMWGDNSEG 170

Query: 150 QLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGK 209
           Q+GL  +I  A VP +V    G+ +  +S G+ H+   T DG+L+ +G S +G++G   +
Sbjct: 171 QIGL-PNILNACVPHQV--TIGKPVSWISCGYYHSAFVTTDGELYIFGESENGKLGLPNE 227

Query: 210 ALESSPLDSNIDRSSESDQEISS----STIEKAQKLVSEGMEKEKYMPI------IWEPF 259
            L +  +   +    E   +++     S +     + + G+ +   + +        EP 
Sbjct: 228 LLSNHRIPQLVPEIPEKVIQVACGGEHSVVLTEDAVYTFGLGQFGQLGLGTLLFETSEPK 287

Query: 260 LVEGV---EVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLG 297
           +VE +    +  I+CG +H+ +L  NG++ + G   +G+LG
Sbjct: 288 VVENIGNKTISYISCGENHAALLTDNGLMYTFGDGRHGKLG 328



 Score = 69.7 bits (169), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 58/182 (31%), Positives = 93/182 (51%), Gaps = 14/182 (7%)

Query: 33  GDGSQGALGLPTSLTGVGGDAYEPTRVP-GLPSDVTSVSAGHYHSLAVTNNGAVWAWGRN 91
           GD S+G +GLP  L     +A  P +V  G P  V+ +S G+YHS  VT +G ++ +G +
Sbjct: 165 GDNSEGQIGLPNIL-----NACVPHQVTIGKP--VSWISCGYYHSAFVTTDGELYIFGES 217

Query: 92  NEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQL 151
              +LG    E  +    P+ V  + +  +    A G   S +  + +++ +G  + GQL
Sbjct: 218 ENGKLGLPN-ELLSNHRIPQLVPEIPEKVI--QVACGGEHSVVLTEDAVYTFGLGQFGQL 274

Query: 152 GLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKAL 211
           GLG  + E   P  VE +  + I  +S G  HA   T++G ++ +G   DGR G LG  L
Sbjct: 275 GLGTLLFETSEPKVVENIGNKTISYISCGENHAALLTDNGLMYTFG---DGRHGKLGLGL 331

Query: 212 ES 213
           E+
Sbjct: 332 EN 333



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 80/258 (31%), Positives = 125/258 (48%), Gaps = 27/258 (10%)

Query: 59  VPG---LPSDVT-SVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVE 114
           +PG     +DV   +S G  HS  VT N  ++ +G NN  QLG G   S++  + P  V+
Sbjct: 26  IPGKFWFKNDVAVHLSCGDEHSAVVTGNNKLYVFGSNNWGQLGLG---SKSAVSKPTCVK 82

Query: 115 GL--DQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGE 172
            L  ++V + A   +  + S  G  G+++  G +  GQLGLG D  E     RV     +
Sbjct: 83  ALKPEKVKLAACGRNHTLVSTEG--GNVYATGGNDEGQLGLG-DTEERTTFHRVSFFTSQ 139

Query: 173 -KIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESS-PLDSNIDRSSE--SDQ 228
            KI ++S G   + A TEDG+LF WG +++G+IG L   L +  P    I +     S  
Sbjct: 140 HKIKQLSAGSNTSAALTEDGRLFMWGDNSEGQIG-LPNILNACVPHQVTIGKPVSWISCG 198

Query: 229 EISSSTIEKAQKLVSEGMEKEKYMPIIWE-------PFLVEGV--EVVDIACGFDHSLVL 279
              S+ +    +L   G  +   + +  E       P LV  +  +V+ +ACG +HS+VL
Sbjct: 199 YYHSAFVTTDGELYIFGESENGKLGLPNELLSNHRIPQLVPEIPEKVIQVACGGEHSVVL 258

Query: 280 GRNGVLLSCGSNVYGQLG 297
             + V  + G   +GQLG
Sbjct: 259 TEDAV-YTFGLGQFGQLG 275


>gi|156365518|ref|XP_001626692.1| predicted protein [Nematostella vectensis]
 gi|156213578|gb|EDO34592.1| predicted protein [Nematostella vectensis]
          Length = 1056

 Score = 89.4 bits (220), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 72/267 (26%), Positives = 116/267 (43%), Gaps = 46/267 (17%)

Query: 66  VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAF 125
           +T V+ G  H++AV++ G V+AWG N+  Q+G G+         PK ++GL +++V    
Sbjct: 87  ITKVTCGKAHTVAVSDQGLVFAWGDNSYGQIGLGSKVKEKVQTIPKMLKGLAKMSVVQIA 146

Query: 126 ASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHAL 185
                S A+   G L+ WG +  GQLG+GK  +    P+ V +L G   + +S G  H+ 
Sbjct: 147 CGCNHSMALTISGHLFCWGDNSSGQLGIGKTHSSMSEPAPVLSLNGVPFMLISAGGAHSF 206

Query: 186 AQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEG 245
           A +  G LFGWG +  G++G          +    DR                       
Sbjct: 207 ALSSSGALFGWGKNEYGQLG----------VHDTTDRP---------------------- 234

Query: 246 MEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGM 305
                 +P + +    +GV  V  +CG  H+ VL  +G + + G    GQLG        
Sbjct: 235 ------LPTLLKSLRSQGVCYV--SCGEKHTAVLTSDGGVFTFGCGTSGQLGHNSNHHEY 286

Query: 306 FPVDINFHPV-----SISSGLGHSLAI 327
            P  + F  +      I+ G  H+LA+
Sbjct: 287 TPRKV-FELMGSVVTQIACGRAHTLAL 312



 Score = 85.5 bits (210), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 77/294 (26%), Positives = 123/294 (41%), Gaps = 51/294 (17%)

Query: 64  SDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCA 123
           S+V  VS G  H+  +  +G V+  G N   QLG+       +  +P+ V  ++   +  
Sbjct: 35  SNVREVSCGWNHTAFLCKDGTVYTCGSNEFGQLGQ-----EKSHTNPESVHAIETFTITK 89

Query: 124 AFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAI--VPSRVEALAGEKIVKVSFGW 181
                  + A+ D G ++ WG +  GQ+GLG  + E +  +P  ++ LA   +V+++ G 
Sbjct: 90  VTCGKAHTVAVSDQGLVFAWGDNSYGQIGLGSKVKEKVQTIPKMLKGLAKMSVVQIACGC 149

Query: 182 GHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKL 241
            H++A T  G LF WG ++ G++G +GK                      SS  E A  L
Sbjct: 150 NHSMALTISGHLFCWGDNSSGQLG-IGKT--------------------HSSMSEPAPVL 188

Query: 242 VSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQ 301
              G+           PF++       I+ G  HS  L  +G L   G N YGQLG    
Sbjct: 189 SLNGV-----------PFML-------ISAGGAHSFALSSSGALFGWGKNEYGQLGVHDT 230

Query: 302 DMGMFPVDINFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGR 355
                P  +     S+ S  G     C  + + V     G+ ++G   S QLG 
Sbjct: 231 TDRPLPTLLK----SLRSQ-GVCYVSCGEKHTAVLTSDGGVFTFGCGTSGQLGH 279



 Score = 82.4 bits (202), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 60/193 (31%), Positives = 99/193 (51%), Gaps = 16/193 (8%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYE-----PTRVPGLPS-DVTSVSAGHYHSLAVTNN 82
           V ++GD S G +GL       G    E     P  + GL    V  ++ G  HS+A+T +
Sbjct: 106 VFAWGDNSYGQIGL-------GSKVKEKVQTIPKMLKGLAKMSVVQIACGCNHSMALTIS 158

Query: 83  GAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWV 142
           G ++ WG N+  QLG G  ++ ++ ++P  V  L+ V      A G  S A+   G+L+ 
Sbjct: 159 GHLFCWGDNSSGQLGIG--KTHSSMSEPAPVLSLNGVPFMLISAGGAHSFALSSSGALFG 216

Query: 143 WGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADG 202
           WGK++ GQLG+  D T+  +P+ +++L  + +  VS G  H    T DG +F +G    G
Sbjct: 217 WGKNEYGQLGV-HDTTDRPLPTLLKSLRSQGVCYVSCGEKHTAVLTSDGGVFTFGCGTSG 275

Query: 203 RIGNLGKALESSP 215
           ++G+     E +P
Sbjct: 276 QLGHNSNHHEYTP 288



 Score = 74.3 bits (181), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 83/295 (28%), Positives = 123/295 (41%), Gaps = 76/295 (25%)

Query: 85  VWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIG--------D 136
           ++ WG+ +E QLG G  E     + P+ +E L+       F+S V   + G         
Sbjct: 1   MFCWGKCSEGQLGVGETEQEFI-STPRLLENLE-------FSSNVREVSCGWNHTAFLCK 52

Query: 137 DGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGW 196
           DG+++  G ++ GQLG  K  T    P  V A+    I KV+ G  H +A ++ G +F W
Sbjct: 53  DGTVYTCGSNEFGQLGQEKSHTN---PESVHAIETFTITKVTCGKAHTVAVSDQGLVFAW 109

Query: 197 GYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIW 256
           G ++ G+IG                        + S   EK Q +               
Sbjct: 110 GDNSYGQIG------------------------LGSKVKEKVQTI--------------- 130

Query: 257 EPFLVEGV---EVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGM---FPV-D 309
            P +++G+    VV IACG +HS+ L  +G L   G N  GQLG  K    M    PV  
Sbjct: 131 -PKMLKGLAKMSVVQIACGCNHSMALTISGHLFCWGDNSSGQLGIGKTHSSMSEPAPVLS 189

Query: 310 INFHP-VSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPDNVPL 363
           +N  P + IS+G  HS A+           +  +  WG N   QLG     + PL
Sbjct: 190 LNGVPFMLISAGGAHSFAL---------SSSGALFGWGKNEYGQLGVHDTTDRPL 235



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 36/129 (27%), Positives = 67/129 (51%), Gaps = 26/129 (20%)

Query: 254 IIWEPFLVEGVE----VVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVD 309
            I  P L+E +E    V +++CG++H+  L ++G + +CGSN +GQLG+EK      P  
Sbjct: 21  FISTPRLLENLEFSSNVREVSCGWNHTAFLCKDGTVYTCGSNEFGQLGQEKSHTN--PES 78

Query: 310 IN----FHPVSISSGLGHSLAICEVRSSNVTGGARGIV-SWGWNRSSQLG-----RMGPD 359
           ++    F    ++ G  H++A+ +          +G+V +WG N   Q+G     +    
Sbjct: 79  VHAIETFTITKVTCGKAHTVAVSD----------QGLVFAWGDNSYGQIGLGSKVKEKVQ 128

Query: 360 NVPLVVEGL 368
            +P +++GL
Sbjct: 129 TIPKMLKGL 137



 Score = 38.9 bits (89), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 40/137 (29%), Positives = 62/137 (45%), Gaps = 11/137 (8%)

Query: 20  FMRSASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSD-VTSVSAGHYHSLA 78
           F  S+SG A+  +G    G LG+  +      D   PT +  L S  V  VS G  H+  
Sbjct: 206 FALSSSG-ALFGWGKNEYGQLGVHDT-----TDRPLPTLLKSLRSQGVCYVSCGEKHTAV 259

Query: 79  VTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRV-EGLDQVNVCAAFASGVVSSAIGDD 137
           +T++G V+ +G     QLG  +     T   P++V E +  V    A       + +   
Sbjct: 260 LTSDGGVFTFGCGTSGQLGHNSNHHEYT---PRKVFELMGSVVTQIACGRAHTLALVPSS 316

Query: 138 GSLWVWGKSKRGQLGLG 154
           G ++ +G+   GQLGLG
Sbjct: 317 GRVYTFGRGGDGQLGLG 333


>gi|328870950|gb|EGG19322.1| regulator of chromosome condensation domain-containing protein
            [Dictyostelium fasciculatum]
          Length = 2003

 Score = 89.4 bits (220), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 69/240 (28%), Positives = 104/240 (43%), Gaps = 35/240 (14%)

Query: 68   SVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFAS 127
            SVS G  H+  +T +G ++ WG N   QLG G L +    + P RVE L Q  +      
Sbjct: 1198 SVSCGWEHAAVITVDGELFTWGNNTSGQLGHG-LAAGKHQSTPMRVESLKQTPIMMMSLG 1256

Query: 128  GVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQ 187
            G  +  I     ++ WG  K GQLG G   T   +P R+E  AG+KI  ++ G+ H L  
Sbjct: 1257 GEHTVVIDRSFHIYSWGNGKYGQLGHGVS-TPHNLPKRIEEFAGQKISSIATGYWHTLVL 1315

Query: 188  TEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGME 247
               G LF +G +  G++G L       P+ + ++          ++ I  A         
Sbjct: 1316 RSGGDLFAFGSNEHGQLG-LNDLKHHLPIPTRVN----------TADIHHAG-------- 1356

Query: 248  KEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFP 307
                     +P  V G     I CG  HS++   +G + S G+N  GQLG    +   +P
Sbjct: 1357 ---------QPTRVTG-----IFCGHSHSVLRTSHGDVYSFGANAKGQLGHGSTESCRYP 1402



 Score = 85.1 bits (209), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 89/348 (25%), Positives = 146/348 (41%), Gaps = 70/348 (20%)

Query: 25   SGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRV-------PGLPSDVTSVSAGHYHSL 77
            SG  + +FG    G LGL      +      PTRV        G P+ VT +  GH HS+
Sbjct: 1317 SGGDLFAFGSNEHGQLGL----NDLKHHLPIPTRVNTADIHHAGQPTRVTGIFCGHSHSV 1372

Query: 78   AVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNV----CAAFASGVVSSA 133
              T++G V+++G N + QLG G+ ES      PK ++GL   N+    C  + + V +  
Sbjct: 1373 LRTSHGDVYSFGANAKGQLGHGSTES---CRYPKLIQGLKGKNIKRITCGPYHTVVTT-- 1427

Query: 134  IGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTE---- 189
              D  S++ WG+ +   LG G +  E +VP  VE    +++ +V  G  H    T+    
Sbjct: 1428 --DLDSVYCWGQGEHMCLGTGSNKNE-LVPKLVELFVNKRVERVVCGLYHTATLTQPMGD 1484

Query: 190  ---DGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGM 246
                G ++  G S  G++G     +   P   ++D++                       
Sbjct: 1485 SNTGGNVYICGSSEHGKLG-----IGGDPRSPSLDKA----------------------- 1516

Query: 247  EKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMF 306
                Y  II     +    VVD+A G + + ++  NG L   G+  +GQ+G  K      
Sbjct: 1517 ----YPAIIPS---INSANVVDLASGAEFNALITSNGALYMWGAGTHGQIGNGKNQDTWI 1569

Query: 307  PVDINFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLG 354
            P       VS+SS    +  I +   S +T  +  +++   NR +Q G
Sbjct: 1570 PTR-----VSLSSEKNQNQFIVDESGSTITLSSSMLLTEKNNRYTQEG 1612



 Score = 75.5 bits (184), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 68/259 (26%), Positives = 124/259 (47%), Gaps = 39/259 (15%)

Query: 17   SRIFMRSASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLP-SDVTSVSAGHYH 75
            S   +R++ G  V SFG  ++G LG      G       P  + GL   ++  ++ G YH
Sbjct: 1369 SHSVLRTSHGD-VYSFGANAKGQLG-----HGSTESCRYPKLIQGLKGKNIKRITCGPYH 1422

Query: 76   SLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVE-----GLDQVNVCAAFASGVV 130
            ++  T+  +V+ WG+   + LG G+ ++      PK VE      +++V VC  + +  +
Sbjct: 1423 TVVTTDLDSVYCWGQGEHMCLGTGSNKNELV---PKLVELFVNKRVERV-VCGLYHTATL 1478

Query: 131  SSAIGDD---GSLWVWGKSKRGQLGLGKD----ITEAIVPSRVEALAGEKIVKVSFGWGH 183
            +  +GD    G++++ G S+ G+LG+G D      +   P+ + ++    +V ++ G   
Sbjct: 1479 TQPMGDSNTGGNVYICGSSEHGKLGIGGDPRSPSLDKAYPAIIPSINSANVVDLASGAEF 1538

Query: 184  ALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQ-----EISSSTI--- 235
                T +G L+ WG    G+IGN GK  + + + + +  SSE +Q     + S STI   
Sbjct: 1539 NALITSNGALYMWGAGTHGQIGN-GKN-QDTWIPTRVSLSSEKNQNQFIVDESGSTITLS 1596

Query: 236  ------EKAQKLVSEGMEK 248
                  EK  +   EG+E+
Sbjct: 1597 SSMLLTEKNNRYTQEGLEE 1615



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 84/365 (23%), Positives = 147/365 (40%), Gaps = 62/365 (16%)

Query: 31   SFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLP-SDVTSVSAGHYHSLAVTNNGAVWAWG 89
            ++G+ + G LG   +    G     P RV  L  + +  +S G  H++ +  +  +++WG
Sbjct: 1217 TWGNNTSGQLGHGLA---AGKHQSTPMRVESLKQTPIMMMSLGGEHTVVIDRSFHIYSWG 1273

Query: 90   RNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSS-AIGDDGSLWVWGKSKR 148
                 QLG G        N PKR+E      + ++ A+G   +  +   G L+ +G ++ 
Sbjct: 1274 NGKYGQLGHGV---STPHNLPKRIEEFAGQKI-SSIATGYWHTLVLRSGGDLFAFGSNEH 1329

Query: 149  GQLGLGKDITEAIVPSRVEAL----AGE--KIVKVSFGWGHALAQTEDGKLFGWGYSADG 202
            GQLGL        +P+RV       AG+  ++  +  G  H++ +T  G ++ +G +A G
Sbjct: 1330 GQLGLNDLKHHLPIPTRVNTADIHHAGQPTRVTGIFCGHSHSVLRTSHGDVYSFGANAKG 1389

Query: 203  RIGNLGKALESSP------LDSNIDRSS--------ESDQEISSSTIEKAQKLVSEGMEK 248
            ++G+        P         NI R +         +D +      +     +  G  K
Sbjct: 1390 QLGHGSTESCRYPKLIQGLKGKNIKRITCGPYHTVVTTDLDSVYCWGQGEHMCLGTGSNK 1449

Query: 249  EKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGR-------NGVLLSCGSNVYGQLGREKQ 301
             + +P + E F+ + VE V   CG  H+  L +        G +  CGS+ +G+LG    
Sbjct: 1450 NELVPKLVELFVNKRVERV--VCGLYHTATLTQPMGDSNTGGNVYICGSSEHGKLG---- 1503

Query: 302  DMGMFPVDINFHPVSISSGLGHSLAICEVRSSNVTGGARG------------IVSWGWNR 349
                    I   P S S    +   I  + S+NV   A G            +  WG   
Sbjct: 1504 --------IGGDPRSPSLDKAYPAIIPSINSANVVDLASGAEFNALITSNGALYMWGAGT 1555

Query: 350  SSQLG 354
              Q+G
Sbjct: 1556 HGQIG 1560



 Score = 62.0 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 64/254 (25%), Positives = 100/254 (39%), Gaps = 59/254 (23%)

Query: 131  SSAIGDDGSLWVWGKSKRGQLGLGKDI-TEAIVPSRVEALAGEKIVKVSFGWGHALAQTE 189
            ++ I  DG L+ WG +  GQLG G         P RVE+L    I+ +S G  H +    
Sbjct: 1206 AAVITVDGELFTWGNNTSGQLGHGLAAGKHQSTPMRVESLKQTPIMMMSLGGEHTVVIDR 1265

Query: 190  DGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKE 249
               ++ WG   +G+ G LG                                    G+   
Sbjct: 1266 SFHIYSWG---NGKYGQLG-----------------------------------HGVSTP 1287

Query: 250  KYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGM-FPV 308
              +P   E F   G ++  IA G+ H+LVL   G L + GSN +GQLG       +  P 
Sbjct: 1288 HNLPKRIEEF--AGQKISSIATGYWHTLVLRSGGDLFAFGSNEHGQLGLNDLKHHLPIPT 1345

Query: 309  DINF-------HPVSISSGL-GHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPDN 360
             +N         P  ++    GHS ++      +V        S+G N   QLG    ++
Sbjct: 1346 RVNTADIHHAGQPTRVTGIFCGHSHSVLRTSHGDV-------YSFGANAKGQLGHGSTES 1398

Query: 361  V--PLVVEGLEGES 372
               P +++GL+G++
Sbjct: 1399 CRYPKLIQGLKGKN 1412



 Score = 40.0 bits (92), Expect = 1.6,   Method: Composition-based stats.
 Identities = 32/110 (29%), Positives = 51/110 (46%), Gaps = 15/110 (13%)

Query: 269  IACGFDHSLVLGRNGVLLSCGSNVYGQLGR-----EKQDMGMFPVDINFHPVSISSGLGH 323
            ++CG++H+ V+  +G L + G+N  GQLG      + Q   M    +   P+ + S LG 
Sbjct: 1199 VSCGWEHAAVITVDGELFTWGNNTSGQLGHGLAAGKHQSTPMRVESLKQTPIMMMS-LGG 1257

Query: 324  SLAICEVRSSNVTGGARGIVSWGWNRSSQLGR--MGPDNVPLVVEGLEGE 371
               +   RS +       I SWG  +  QLG     P N+P  +E   G+
Sbjct: 1258 EHTVVIDRSFH-------IYSWGNGKYGQLGHGVSTPHNLPKRIEEFAGQ 1300


>gi|293346825|ref|XP_001064216.2| PREDICTED: probable E3 ubiquitin-protein ligase HERC6 [Rattus
           norvegicus]
          Length = 1149

 Score = 89.4 bits (220), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 85/309 (27%), Positives = 137/309 (44%), Gaps = 56/309 (18%)

Query: 70  SAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGV 129
           ++G  HSL + +N  V++ G N+  QLG+ + +S      P+ ++ L  V++        
Sbjct: 185 ASGERHSLLLFSNHRVYSCGDNSRGQLGQKSPQSTKR---PEPIQALSTVHIDLVSCGKE 241

Query: 130 VSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTE 189
            S A+   G ++ WG    GQLG+G+    + +P+++ +LAG KI++VS G  H+LA +E
Sbjct: 242 HSVAVCHQGRVFTWGAGSEGQLGIGESKEISFMPTKINSLAGIKIIQVSCGHYHSLALSE 301

Query: 190 DGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKE 249
           DG++F WG +  G++G LG  L           S  S Q++ S                 
Sbjct: 302 DGQVFSWGSNRQGQLG-LGNNL----------CSQASPQKVKS----------------- 333

Query: 250 KYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQL---GREKQDMGMF 306
                      +EG+ +  +A G  HS  L   G     G+N  GQL   G   ++    
Sbjct: 334 -----------LEGIPLAQVAAGGTHSFALSLMGTSFGWGNNRSGQLALSGNSAKEQIYK 382

Query: 307 PVDI----NFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPDNVP 362
           P  I      + V IS G  H+  + E       GG+    S     S + GR GP    
Sbjct: 383 PHSIGALKTLNVVYISCGYEHTSVLTEDGQVFTFGGSS---SEQLQHSPRSGRGGPQ--- 436

Query: 363 LVVEGLEGE 371
            ++EG+ G 
Sbjct: 437 -LIEGIGGH 444


>gi|169808411|ref|NP_082040.2| RCC1 and BTB domain-containing protein 1 [Mus musculus]
 gi|26329171|dbj|BAC28324.1| unnamed protein product [Mus musculus]
 gi|148704196|gb|EDL36143.1| regulator of chromosome condensation (RCC1) and BTB (POZ) domain
           containing protein 1, isoform CRA_a [Mus musculus]
          Length = 531

 Score = 89.4 bits (220), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 58/180 (32%), Positives = 92/180 (51%), Gaps = 5/180 (2%)

Query: 62  LPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNV 121
           L   V  V+ G +HS+A+  +G ++AWG NN  Q+G G+  ++ T   P++V        
Sbjct: 126 LIKQVIEVACGSHHSMALAADGELFAWGYNNCGQVGSGSTANQPT---PRKVTNCLHTKR 182

Query: 122 CAAFASGVVSS-AIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFG 180
               A G  SS A+ D G ++ WG +  GQLGLG +  + + P RV AL G  + ++  G
Sbjct: 183 VVNIACGQTSSMAVLDSGEVYGWGYNGNGQLGLGNNGNQ-LTPVRVAALHGMCVNQIVCG 241

Query: 181 WGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQK 240
           + H LA T++G L+ WG +  G++G   K    SP    +++    +     ST   A K
Sbjct: 242 YAHTLALTDEGLLYAWGANTYGQLGTGSKNNLLSPTQIMVEKERVIEIAACHSTHTSAAK 301



 Score = 79.0 bits (193), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 72/293 (24%), Positives = 116/293 (39%), Gaps = 67/293 (22%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLP-SDVTSVSAGH-YHSLAVTNNGAVW 86
           V  FG      LG     TG       P ++  L    + S+S G   H L  T +G V+
Sbjct: 43  VFVFGLNYSNCLG-----TGDNQSTLVPKKLEALCGKKIKSLSYGSGPHVLLTTEDGVVY 97

Query: 87  AWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVV---------SSAIGDD 137
           AWG N   QLG G              +G+  V VC       V         S A+  D
Sbjct: 98  AWGHNGYSQLGNGTTN-----------QGIAPVQVCTNLLIKQVIEVACGSHHSMALAAD 146

Query: 138 GSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWG 197
           G L+ WG +  GQ+G G    +         L  +++V ++ G   ++A  + G+++GWG
Sbjct: 147 GELFAWGYNNCGQVGSGSTANQPTPRKVTNCLHTKRVVNIACGQTSSMAVLDSGEVYGWG 206

Query: 198 YSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWE 257
           Y+ +G++G      + +P+             +++                         
Sbjct: 207 YNGNGQLGLGNNGNQLTPV------------RVAA------------------------- 229

Query: 258 PFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDI 310
              + G+ V  I CG+ H+L L   G+L + G+N YGQLG   ++  + P  I
Sbjct: 230 ---LHGMCVNQIVCGYAHTLALTDEGLLYAWGANTYGQLGTGSKNNLLSPTQI 279



 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 66/246 (26%), Positives = 106/246 (43%), Gaps = 59/246 (23%)

Query: 134 IGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWG-HALAQTEDGK 192
           + D+  ++V+G +    LG G D    +VP ++EAL G+KI  +S+G G H L  TEDG 
Sbjct: 37  VTDNDEVFVFGLNYSNCLGTG-DNQSTLVPKKLEALCGKKIKSLSYGSGPHVLLTTEDGV 95

Query: 193 LFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYM 252
           ++ WG++   ++GN                                      G   +   
Sbjct: 96  VYAWGHNGYSQLGN--------------------------------------GTTNQGIA 117

Query: 253 PI-IWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDIN 311
           P+ +    L++  +V+++ACG  HS+ L  +G L + G N  GQ+G         P  + 
Sbjct: 118 PVQVCTNLLIK--QVIEVACGSHHSMALAADGELFAWGYNNCGQVGSGSTANQPTPRKVT 175

Query: 312 --FHP---VSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQ--LGRMGPDNVPLV 364
              H    V+I+ G   S+A+  + S  V G       WG+N + Q  LG  G    P+ 
Sbjct: 176 NCLHTKRVVNIACGQTSSMAV--LDSGEVYG-------WGYNGNGQLGLGNNGNQLTPVR 226

Query: 365 VEGLEG 370
           V  L G
Sbjct: 227 VAALHG 232


>gi|332027112|gb|EGI67208.1| Putative E3 ubiquitin-protein ligase HERC2 [Acromyrmex echinatior]
          Length = 4853

 Score = 89.4 bits (220), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 99/369 (26%), Positives = 160/369 (43%), Gaps = 45/369 (12%)

Query: 19   IFMRSASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDV---TSVSAGHYH 75
            +F+ S  G  + + G+G+ G LGL     G   +  EP  +P L   V    +V +G  H
Sbjct: 3057 LFIVSQEG-KLYACGEGTNGRLGL-----GDDNNMCEPKAIPFLSQFVIKKVAVHSGGKH 3110

Query: 76   SLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIG 135
            +LA+T +G V++WG   + +LG G   S    + PK +E L    +         S+AI 
Sbjct: 3111 ALALTQDGKVFSWGEGEDGKLGHGNCIS---LDKPKLIEVLKSKRIRDIACGSGHSAAIA 3167

Query: 136  DDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGW--GHALAQTEDGKL 193
             +G L+ WG  + G+LG G  IT+   P  V+AL G ++V+V+ G      +A T DG +
Sbjct: 3168 SNGELYTWGLGEYGRLGHGDTITQT-RPKLVQALIGHRVVQVACGSRDAQTMALTTDGYV 3226

Query: 194  FGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGME----KE 249
            + WG    G++G  G     +PL   +DR +           + +  L   G      K 
Sbjct: 3227 YSWGDGDFGKLGRGGSDGCYTPL--LVDRLNNLGVIQVECGAQFSLALTKYGEVWTWGKG 3284

Query: 250  KYMPI-------IWEPFLVEGV---EVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGRE 299
             Y  +       + +P LVEG+   +++ +A G  H L +   G + + G N +GQ G  
Sbjct: 3285 DYFRLGHGNDHHVRKPTLVEGLRGKKIIHVAVGALHCLAVTDTGQVYAWGDNDHGQQGNG 3344

Query: 300  KQDMGMFPVDINFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPD 359
               +   P             L H L   + R + V+ G+   ++W        G   P 
Sbjct: 3345 TTSVNRKP------------SLVHDLE--DARVNRVSCGSSHSIAWVLVDQPSNGNQDPV 3390

Query: 360  NVPLVVEGL 368
              P V + L
Sbjct: 3391 TFPTVRDPL 3399



 Score = 85.5 bits (210), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 81/303 (26%), Positives = 131/303 (43%), Gaps = 31/303 (10%)

Query: 50  GGDAYEPTRVPGLPSDVTSVSAGH---YHSLAVTNNGAVWAWGRNNEVQLGRGALESRAT 106
           G +   P RV G      ++ A H    H LA+T +G V++WG  +  +LG G      +
Sbjct: 551 GSETQYPQRVHGFSDKPITMIASHADGKHYLALTQDGCVYSWGNGDGGRLGHG---DTIS 607

Query: 107 WNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRV 166
           +++PK +E L + N+         S+A+  +G L+ WG+   G+LG G +  + + P+ V
Sbjct: 608 YDEPKLIEALLEKNIIFIACGSTYSAALSANGELYTWGRGNYGRLGHG-NFDDVMTPTLV 666

Query: 167 EALAGEKIVKVSFGWG--HALAQTEDGKLFGWGYSADGRIGNLGKALESSP------LDS 218
             L G  +V V+ G G    L  T  G +F WG    G++G  G     +P      LD 
Sbjct: 667 TTLKGHTVVHVACGSGDSQTLCVTASGIVFSWGDGDYGKLGRGGTDGSKTPKIVDKLLDI 726

Query: 219 NIDRSSESDQEISSSTIE---------KAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDI 269
           N+ +     Q  ++ T            A +L   G E+    P + E       +V D+
Sbjct: 727 NVVKVFCGSQFSAALTAHGEVYTWGKGDAYRL-GHGSEEHVRYPKVIESL--RDRKVKDL 783

Query: 270 ACGFDHSLVLGRNGVLLSCGSNVYGQ----LGREKQDMGMFPVDINFHPVSISSGLGHSL 325
           + G  H L L  +  +   G N YGQ    LG    +  + P   +   + ++SG   S 
Sbjct: 784 SVGTTHILALTEDQFVYGWGRNDYGQIDPTLGPIISEPTLCPTLSSKTVIGLASGPTQSF 843

Query: 326 AIC 328
           A C
Sbjct: 844 AWC 846



 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 98/368 (26%), Positives = 161/368 (43%), Gaps = 78/368 (21%)

Query: 19   IFMRSASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDV-------TSVSA 71
            +F  +A G  + S G G+ G LG       +GG   +   +P L   +        +VS+
Sbjct: 4039 LFAVTADG-KIYSTGYGAAGRLG-------IGGT--DSVMIPTLLESIQHVFIKKVAVSS 4088

Query: 72   GHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVS 131
            G  H +A+++ G V++WG  ++ +LG G   ++ +++ PK +E L  V +      G  S
Sbjct: 4089 GGKHCIALSSEGHVYSWGEGDDGKLGHG---NKVSYDRPKLIEDLLGVEIVDIACGGHHS 4145

Query: 132  SAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHA--LAQTE 189
            +AI   G L+ WGK + G+LG G D  + + P  VEAL   K++ V+ G G A  L  T+
Sbjct: 4146 AAITSAGWLYTWGKGRYGRLGHG-DSDDQLRPKVVEALQDYKVIDVACGSGDAQTLCVTD 4204

Query: 190  DGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKE 249
            D  ++ WG   DG  G LG+                                 S+G +  
Sbjct: 4205 DDNVWSWG---DGDYGKLGRG-------------------------------GSDGCK-- 4228

Query: 250  KYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVD 309
              +P+  +     G+ VV + CG   S+ L R+G + + G   Y +LG    D    P  
Sbjct: 4229 --VPLKIDSL--AGLGVVKVECGSQFSVALTRSGAVYTWGKGDYHRLGHGTDDHVRRPRK 4284

Query: 310  INF----HPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQL--GRMGPDNVPL 363
            +        +SI++G  H +A C  +          + +WG N   QL  G     + P 
Sbjct: 4285 VAALQGKKIISIATGSLHCVA-CSDKGE--------VFTWGDNDEGQLGDGTTSALHRPR 4335

Query: 364  VVEGLEGE 371
            +V  L+G+
Sbjct: 4336 LVHALQGK 4343



 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 78/297 (26%), Positives = 121/297 (40%), Gaps = 59/297 (19%)

Query: 82   NGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLW 141
            +GA++ WG N+  QLG   LE       P   E L  +             A+  DG ++
Sbjct: 3993 SGAIYGWGHNHRGQLG--GLEGPKV-KLPAPCESLSALRPIQLAGGEQTLFAVTADGKIY 4049

Query: 142  VWGKSKRGQLGLGKDITEAIVPSRVEALAGE--KIVKVSFGWGHALAQTEDGKLFGWGYS 199
              G    G+LG+G      ++P+ +E++     K V VS G  H +A + +G ++ WG  
Sbjct: 4050 STGYGAAGRLGIG-GTDSVMIPTLLESIQHVFIKKVAVSSGGKHCIALSSEGHVYSWGEG 4108

Query: 200  ADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPF 259
             DG++G+  K     P                        KL+ + +             
Sbjct: 4109 DDGKLGHGNKVSYDRP------------------------KLIEDLL------------- 4131

Query: 260  LVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDI----NFHPV 315
               GVE+VDIACG  HS  +   G L + G   YG+LG    D  + P  +    ++  +
Sbjct: 4132 ---GVEIVDIACGGHHSAAITSAGWLYTWGKGRYGRLGHGDSDDQLRPKVVEALQDYKVI 4188

Query: 316  SISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPD--NVPLVVEGLEG 370
             ++ G G +  +C     NV        SWG     +LGR G D   VPL ++ L G
Sbjct: 4189 DVACGSGDAQTLCVTDDDNVW-------SWGDGDYGKLGRGGSDGCKVPLKIDSLAG 4238



 Score = 65.9 bits (159), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 77/296 (26%), Positives = 116/296 (39%), Gaps = 59/296 (19%)

Query: 81   NNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSL 140
               AV+ WG N++ QLG G   S+     P   E L ++              +  +G L
Sbjct: 3010 QQSAVYVWGLNDKDQLG-GLKGSKIKL--PVYSETLSKLKPIHIAGGSKTLFIVSQEGKL 3066

Query: 141  WVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWG--HALAQTEDGKLFGWGY 198
            +  G+   G+LGLG D      P  +  L+   I KV+   G  HALA T+DGK+F WG 
Sbjct: 3067 YACGEGTNGRLGLGDD-NNMCEPKAIPFLSQFVIKKVAVHSGGKHALALTQDGKVFSWGE 3125

Query: 199  SADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEP 258
              DG++G+ G  +                                  ++K K + ++   
Sbjct: 3126 GEDGKLGH-GNCI---------------------------------SLDKPKLIEVL--- 3148

Query: 259  FLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFHPVSIS 318
               +   + DIACG  HS  +  NG L + G   YG+LG                P  + 
Sbjct: 3149 ---KSKRIRDIACGSGHSAAIASNGELYTWGLGEYGRLGHGD-------TITQTRPKLVQ 3198

Query: 319  SGLGHSL--AICEVRSSNVTGGARG--IVSWGWNRSSQLGRMGPD--NVPLVVEGL 368
            + +GH +    C  R +          + SWG     +LGR G D    PL+V+ L
Sbjct: 3199 ALIGHRVVQVACGSRDAQTMALTTDGYVYSWGDGDFGKLGRGGSDGCYTPLLVDRL 3254



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 51/158 (32%), Positives = 74/158 (46%), Gaps = 12/158 (7%)

Query: 31   SFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPS-DVTSVSAGHYHSLAVTNNGAVWAWG 89
            S+GDG  G LG      G       P ++  L    V  V  G   S+A+T +GAV+ WG
Sbjct: 4210 SWGDGDYGKLG-----RGGSDGCKVPLKIDSLAGLGVVKVECGSQFSVALTRSGAVYTWG 4264

Query: 90   RNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRG 149
            + +  +LG G  +       P++V  L    + +     +   A  D G ++ WG +  G
Sbjct: 4265 KGDYHRLGHGTDDH---VRRPRKVAALQGKKIISIATGSLHCVACSDKGEVFTWGDNDEG 4321

Query: 150  QLGLGKDITEAI-VPSRVEALAGEKIVKVSFGWGHALA 186
            QLG G   T A+  P  V AL G+KI +V+ G  H LA
Sbjct: 4322 QLGDG--TTSALHRPRLVHALQGKKITRVACGSAHTLA 4357



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 74/313 (23%), Positives = 127/313 (40%), Gaps = 63/313 (20%)

Query: 69   VSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQ--VNVCAAFA 126
            ++ G      V+  G ++A G     +LG G   +     +PK +  L Q  +   A  +
Sbjct: 3050 IAGGSKTLFIVSQEGKLYACGEGTNGRLGLGDDNNMC---EPKAIPFLSQFVIKKVAVHS 3106

Query: 127  SGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALA 186
             G  + A+  DG ++ WG+ + G+LG G  I+    P  +E L  ++I  ++ G GH+ A
Sbjct: 3107 GGKHALALTQDGKVFSWGEGEDGKLGHGNCIS-LDKPKLIEVLKSKRIRDIACGSGHSAA 3165

Query: 187  QTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGM 246
               +G+L+ WG    GR+G+     ++ P                    +  Q L+    
Sbjct: 3166 IASNGELYTWGLGEYGRLGHGDTITQTRP--------------------KLVQALI---- 3201

Query: 247  EKEKYMPIIWEPFLVEGVEVVDIACGFD--HSLVLGRNGVLLSCGSNVYGQLGREKQDMG 304
                            G  VV +ACG     ++ L  +G + S G   +G+LGR   D  
Sbjct: 3202 ----------------GHRVVQVACGSRDAQTMALTTDGYVYSWGDGDFGKLGRGGSDGC 3245

Query: 305  MFPVDI----NFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPDN 360
              P+ +    N   + +  G   SLA+ +            + +WG     +LG     +
Sbjct: 3246 YTPLLVDRLNNLGVIQVECGAQFSLALTKYGE---------VWTWGKGDYFRLGHGNDHH 3296

Query: 361  V--PLVVEGLEGE 371
            V  P +VEGL G+
Sbjct: 3297 VRKPTLVEGLRGK 3309


>gi|428170458|gb|EKX39383.1| hypothetical protein GUITHDRAFT_89130 [Guillardia theta CCMP2712]
          Length = 396

 Score = 89.4 bits (220), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 102/361 (28%), Positives = 160/361 (44%), Gaps = 58/361 (16%)

Query: 29  VVSFGDGSQGALGL-----PTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNG 83
           V S G G+ G LGL      T+ TG  G   +         +V S++ G  H+L ++  G
Sbjct: 6   VYSCGHGAGGRLGLNDERARTAFTGPLGTLQDV--------EVKSLACGGKHNLLLSRAG 57

Query: 84  AVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVW 143
            V++WG N+  Q G G +E  + W +P+ +  L+ V V    A    S A+ D   ++ W
Sbjct: 58  KVYSWGYNDSRQTGHG-VEDLSDW-EPRWIRALETVKVVQIAAGEDHSVALTDRSEVFTW 115

Query: 144 GKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGR 203
           G+   GQLG G D+++   P  V+ L G+ I  +  G+ +  A T  GK+ G+G +A G+
Sbjct: 116 GRGLHGQLGHG-DVSDVWFPFLVKGLQGKGIKSIGCGYENTFAITGTGKVLGFGSAASGK 174

Query: 204 IGN------------LGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKY 251
           +GN            L   L+S    + I  +   +    S  +    +L S G      
Sbjct: 175 LGNGDVDGGIGGNVYLPVQLKSLAKFTIIQATGGKN---FSMFLSHTGQLYSVGYAANGQ 231

Query: 252 MPIIWE-------PFL-------VEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLG 297
           + I +E       P+         +GV V  ++CG  HSL L  +G++ S GS +   LG
Sbjct: 232 LGIPFEEVESLNLPYTGTMQEVSHKGVFVKYVSCGDSHSLALSEDGIVYSWGSGINWALG 291

Query: 298 REKQDMGMFPVDINFHP----VSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQL 353
               +    P  +        VS+S+G  HS A+      + TG    I +WG N   QL
Sbjct: 292 HGGTEDTFTPKMVAMLEADPCVSVSAGGYHSAAV------SATG---RIYTWGRNFVGQL 342

Query: 354 G 354
           G
Sbjct: 343 G 343



 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 42/132 (31%), Positives = 64/132 (48%), Gaps = 13/132 (9%)

Query: 66  VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAF 125
           V  VS G  HSLA++ +G V++WG      LG G  E   T   PK V  L+     +  
Sbjct: 260 VKYVSCGDSHSLALSEDGIVYSWGSGINWALGHGGTEDTFT---PKMVAMLEADPCVSVS 316

Query: 126 ASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITE------AIVPSRV----EALAGEKIV 175
           A G  S+A+   G ++ WG++  GQLG G++I +        +P+RV       + E  +
Sbjct: 317 AGGYHSAAVSATGRIYTWGRNFVGQLGTGQNIDDHSADHVQRLPTRVILKGSVDSSEMAM 376

Query: 176 KVSFGWGHALAQ 187
           +V  G  H + Q
Sbjct: 377 RVGCGQCHTILQ 388



 Score = 44.7 bits (104), Expect = 0.069,   Method: Compositional matrix adjust.
 Identities = 32/72 (44%), Positives = 38/72 (52%), Gaps = 6/72 (8%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSD-VTSVSAGHYHSLAVTNNGAVWA 87
           V S+G G   ALG      G   D + P  V  L +D   SVSAG YHS AV+  G ++ 
Sbjct: 279 VYSWGSGINWALG-----HGGTEDTFTPKMVAMLEADPCVSVSAGGYHSAAVSATGRIYT 333

Query: 88  WGRNNEVQLGRG 99
           WGRN   QLG G
Sbjct: 334 WGRNFVGQLGTG 345



 Score = 41.2 bits (95), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 41/135 (30%), Positives = 64/135 (47%), Gaps = 17/135 (12%)

Query: 245 GMEKEKYMPIIWEPF-LVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDM 303
           G+  E+       P   ++ VEV  +ACG  H+L+L R G + S G N   Q G   +D+
Sbjct: 18  GLNDERARTAFTGPLGTLQDVEVKSLACGGKHNLLLSRAGKVYSWGYNDSRQTGHGVEDL 77

Query: 304 GMF-PVDI----NFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGP 358
             + P  I        V I++G  HS+A+ + RS         + +WG     QLG    
Sbjct: 78  SDWEPRWIRALETVKVVQIAAGEDHSVALTD-RSE--------VFTWGRGLHGQLGHGDV 128

Query: 359 DNV--PLVVEGLEGE 371
            +V  P +V+GL+G+
Sbjct: 129 SDVWFPFLVKGLQGK 143


>gi|294816123|ref|ZP_06774766.1| BNR repeat domain protein [Streptomyces clavuligerus ATCC 27064]
 gi|294328722|gb|EFG10365.1| BNR repeat domain protein [Streptomyces clavuligerus ATCC 27064]
          Length = 527

 Score = 89.4 bits (220), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 97/340 (28%), Positives = 146/340 (42%), Gaps = 75/340 (22%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLP-SDVTSVSAGHY------HSLAVTN 81
           V S+G    G LG  T +     D Y PT +P LP  DV  ++AG         ++A+ N
Sbjct: 152 VQSWGANVTGQLGNATMI-----DRYAPTPIPALPKQDVQQLAAGADATSGSGFAVALLN 206

Query: 82  NGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAA---FASGVVSSAIGDDG 138
           +  VW WG+N++ QLG G L ++A    P RV GL+ +   AA    A  + ++    DG
Sbjct: 207 DNTVWTWGQNDKGQLGTG-LVTKAI-PVPGRVPGLNGITQVAAGSLHALALRNNGDPQDG 264

Query: 139 SLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGY 198
            +W WG +  GQLG   ++ +  VP  V+ L G   + V+ G  H+LA  E G L  WG 
Sbjct: 265 -VWAWGDNIHGQLGDSTNVPK-TVPVPVQGLTGSGTIAVATGCEHSLALREGGTLMAWGN 322

Query: 199 SADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEP 258
           +  G++GN    L + P++                     + L S               
Sbjct: 323 NDKGQLGNDTILLSTIPVE--------------------VKNLTS--------------- 347

Query: 259 FLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFHPV--- 315
                  VV+IA G + SL    +G + + G N +G+LG  +    + PV +   P    
Sbjct: 348 ------PVVEIAAGCNFSLARLADGTIKAWGENGHGELGNGQTANSLTPVSVTGLPPGSA 401

Query: 316 -SISSGLGHSLAI-CEVRSSNVTGGARGIVSWGWNRSSQL 353
             I +G  HS A+  + R          +  WG N   QL
Sbjct: 402 ERIVAGGNHSYALYSDYR----------VYGWGSNDKGQL 431



 Score = 71.6 bits (174), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 81/304 (26%), Positives = 130/304 (42%), Gaps = 65/304 (21%)

Query: 78  AVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIG-- 135
           AV ++  V +WG N   QLG   +  R     P  +  L + +V    A    +S  G  
Sbjct: 145 AVGHDPLVQSWGANVTGQLGNATMIDRYA---PTPIPALPKQDVQQLAAGADATSGSGFA 201

Query: 136 ----DDGSLWVWGKSKRGQLGLGKDITEAI-VPSRVEALAGEKIVKVSFGWGHALAQTED 190
               +D ++W WG++ +GQLG G  +T+AI VP RV  L G  I +V+ G  HALA   +
Sbjct: 202 VALLNDNTVWTWGQNDKGQLGTGL-VTKAIPVPGRVPGLNG--ITQVAAGSLHALALRNN 258

Query: 191 GK----LFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGM 246
           G     ++ WG +  G++G+                         S+ + K   +  +G+
Sbjct: 259 GDPQDGVWAWGDNIHGQLGD-------------------------STNVPKTVPVPVQGL 293

Query: 247 EKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMF 306
                           G   + +A G +HSL L   G L++ G+N  GQLG +   +   
Sbjct: 294 ---------------TGSGTIAVATGCEHSLALREGGTLMAWGNNDKGQLGNDTILLSTI 338

Query: 307 PVDINFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPDN--VPLV 364
           PV++     +++S +    A C    + +  G   I +WG N   +LG     N   P+ 
Sbjct: 339 PVEVK----NLTSPVVEIAAGCNFSLARLADGT--IKAWGENGHGELGNGQTANSLTPVS 392

Query: 365 VEGL 368
           V GL
Sbjct: 393 VTGL 396



 Score = 58.5 bits (140), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 54/184 (29%), Positives = 87/184 (47%), Gaps = 18/184 (9%)

Query: 26  GTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAV 85
           G  ++++G+  +G LG  T L      +  P  V  L S V  ++AG   SLA   +G +
Sbjct: 314 GGTLMAWGNNDKGQLGNDTILL-----STIPVEVKNLTSPVVEIAAGCNFSLARLADGTI 368

Query: 86  WAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGK 145
            AWG N   +LG G   +  T   P  V GL   +     A G  S A+  D  ++ WG 
Sbjct: 369 KAWGENGHGELGNGQTANSLT---PVSVTGLPPGSAERIVAGGNHSYALYSDYRVYGWGS 425

Query: 146 SKRGQLGLGKDITEAIVPSRVEALAGEKIVKVS---FGWGHALAQTE-DGKLFGWGYSAD 201
           + +GQL       +  +  R +A+   K+ KV+    G  + +A T+ +  + GWG +A 
Sbjct: 426 NDKGQL------ADGTINPRTQAMQASKLPKVTSIAAGKDYGIALTDGNQNIIGWGNNAR 479

Query: 202 GRIG 205
           G++G
Sbjct: 480 GQLG 483



 Score = 42.7 bits (99), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 41/144 (28%), Positives = 64/144 (44%), Gaps = 11/144 (7%)

Query: 20  FMRSASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPS-DVTSVSAGHYHSLA 78
             R A GT + ++G+   G LG      G   ++  P  V GLP      + AG  HS A
Sbjct: 360 LARLADGT-IKAWGENGHGELG-----NGQTANSLTPVSVTGLPPGSAERIVAGGNHSYA 413

Query: 79  VTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDG 138
           + ++  V+ WG N++ QL  G +  R       +   L +V   AA     ++   G+  
Sbjct: 414 LYSDYRVYGWGSNDKGQLADGTINPRT---QAMQASKLPKVTSIAAGKDYGIALTDGNQ- 469

Query: 139 SLWVWGKSKRGQLGLGKDITEAIV 162
           ++  WG + RGQLG G      +V
Sbjct: 470 NIIGWGNNARGQLGSGTTDPHTLV 493


>gi|255638076|gb|ACU19352.1| unknown [Glycine max]
          Length = 440

 Score = 89.4 bits (220), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 77/273 (28%), Positives = 125/273 (45%), Gaps = 54/273 (19%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVP---GLPSDVTSVSAGHYHSLAVTNNGAV 85
           V S+G    G LGL TS      D+  P ++    G+P  +  V+AG  HS+A+T NG +
Sbjct: 139 VQSWGRNQNGQLGLGTS-----EDSLVPQKIQTFQGVP--IKMVAAGAEHSVAITENGEL 191

Query: 86  WAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGK 145
           + WG      LG G    R     P++V  +D   +         + ++   G L+ +G 
Sbjct: 192 YGWGWGRYGNLGLGDRNDRWI---PEKVSSVDCDKMVMVACGWRHTISVSSLGGLYTYGW 248

Query: 146 SKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIG 205
           SK GQLG G +  +++VP +++AL+ + I +VS GW H++A T  G L+GWG++  G++G
Sbjct: 249 SKYGQLGHG-NFEDSLVPQKLQALSDKLISQVSGGWRHSMALTSTGLLYGWGWNKFGQVG 307

Query: 206 NLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVE 265
                     +  N+DR S                            P+  +       +
Sbjct: 308 ----------VGDNVDRCS----------------------------PV--QVKFPHDQK 327

Query: 266 VVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGR 298
           VV I+CG+ H++ +     + S G    GQLG 
Sbjct: 328 VVQISCGWRHTIAVTEKENVFSWGRGTNGQLGH 360



 Score = 82.0 bits (201), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 87/320 (27%), Positives = 147/320 (45%), Gaps = 36/320 (11%)

Query: 55  EPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVE 114
           E T     PS V  +SAG  H++A+ +   V +WGR  + QLG G  + R     P  + 
Sbjct: 4   EVTAATSPPSRVLLISAGASHTVALLSGNVVCSWGRGEDGQLGHGDTDDRLL---PTHLS 60

Query: 115 GLD--QVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGE 172
            LD  Q++  A  A   ++ +   +  L+ WG    G+LG G   ++ ++P  + AL G 
Sbjct: 61  ALDAQQIDSIACGADHTLAYSESRN-ELYSWGWGDFGRLGHGNS-SDLLIPQPIIALQGL 118

Query: 173 KIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISS 232
           +I +++ G  H LA T +G++  WG + +G++G LG + E S +   I        ++ +
Sbjct: 119 RIKQIACGDSHCLAVTMEGEVQSWGRNQNGQLG-LGTS-EDSLVPQKIQTFQGVPIKMVA 176

Query: 233 STIEKAQKLVSEGMEK----EKYMPI-------IWEPFLVEGVE---VVDIACGFDHSLV 278
           +  E +  +   G        +Y  +        W P  V  V+   +V +ACG+ H++ 
Sbjct: 177 AGAEHSVAITENGELYGWGWGRYGNLGLGDRNDRWIPEKVSSVDCDKMVMVACGWRHTIS 236

Query: 279 LGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFHP----VSISSGLGHSLAICEVRSSN 334
           +   G L + G + YGQLG    +  + P  +          +S G  HS+A+       
Sbjct: 237 VSSLGGLYTYGWSKYGQLGHGNFEDSLVPQKLQALSDKLISQVSGGWRHSMALTS----- 291

Query: 335 VTGGARGIVSWGWNRSSQLG 354
            TG   G   WGWN+  Q+G
Sbjct: 292 -TGLLYG---WGWNKFGQVG 307



 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 53/185 (28%), Positives = 94/185 (50%), Gaps = 10/185 (5%)

Query: 32  FGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSD-VTSVSAGHYHSLAVTNNGAVWAWGR 90
           +G G  G LGL     G   D + P +V  +  D +  V+ G  H+++V++ G ++ +G 
Sbjct: 194 WGWGRYGNLGL-----GDRNDRWIPEKVSSVDCDKMVMVACGWRHTISVSSLGGLYTYGW 248

Query: 91  NNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQ 150
           +   QLG G  E       P++++ L    +         S A+   G L+ WG +K GQ
Sbjct: 249 SKYGQLGHGNFEDSLV---PQKLQALSDKLISQVSGGWRHSMALTSTGLLYGWGWNKFGQ 305

Query: 151 LGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKA 210
           +G+G ++ +   P +V+    +K+V++S GW H +A TE   +F WG   +G++G+    
Sbjct: 306 VGVGDNV-DRCSPVQVKFPHDQKVVQISCGWRHTIAVTEKENVFSWGRGTNGQLGHGDTV 364

Query: 211 LESSP 215
             +SP
Sbjct: 365 DRNSP 369


>gi|398338907|ref|ZP_10523610.1| regulator of chromosome condensation [Leptospira kirschneri serovar
           Bim str. 1051]
 gi|421130676|ref|ZP_15590868.1| chromosome condensation regulator RCC1 repeat protein [Leptospira
           kirschneri str. 2008720114]
 gi|410357779|gb|EKP04984.1| chromosome condensation regulator RCC1 repeat protein [Leptospira
           kirschneri str. 2008720114]
          Length = 507

 Score = 89.0 bits (219), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 90/296 (30%), Positives = 137/296 (46%), Gaps = 30/296 (10%)

Query: 29  VVSFGDGSQGALGLPTSLTGVG-----GDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNG 83
           V ++G  S+G LG+  + T        G+   PT +PG+ + V   + G  H+L + ++G
Sbjct: 200 VYTWGANSKGQLGIGNNNTDPAKASDAGNRQPPTEIPGINNAVMG-AYGFNHALILKSDG 258

Query: 84  AVWAWGRNNEVQLGRGA--LESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLW 141
            V A+G+NN  QLG G   L   +  ++P  V  L   NV    A    S+A+ ++G ++
Sbjct: 259 TVVAFGQNNVGQLGNGENNLNRNSFSSNPVNVVQLR--NVIQVIAGSEHSAALTENGEVY 316

Query: 142 VWGKSKRGQLGLG---KDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGY 198
           VWG+++ G LG G      T   VP +VE L   KI +++ G  H LA T DGK++ WG 
Sbjct: 317 VWGRNQYGNLGNGIVSPANTVQSVPVKVEGLP--KIKQIANGRDHILALTYDGKIYSWGL 374

Query: 199 SADGRIGNLGKALESSPLDSNIDRSSESDQEI-----SSSTIEKAQKLVSEGMEK----- 248
           +A G++G  G              + +    I      S  I K  ++   G        
Sbjct: 375 NASGQLGIGGNGNPPPTPIPTKILNIQDVASIWAGGTQSFAILKNGEVKGWGANGNMASL 434

Query: 249 ---EKYMPIIWEPF-LVEGVE-VVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGRE 299
              E   P ++EP   V G++ VV   CG  H+  L  NG +   G N  G LGR 
Sbjct: 435 ALGESNTPKVYEPNKAVVGIDNVVHFGCGATHNFALLGNGEIYGWGWNFKGSLGRN 490



 Score = 69.7 bits (169), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 81/310 (26%), Positives = 131/310 (42%), Gaps = 68/310 (21%)

Query: 67  TSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQV-NVCAAF 125
           T +SAG  HS  + N G ++  GRNN  QLG G + +    ND  R+  +D++ ++ +  
Sbjct: 130 TKLSAGGAHSGFLIN-GELYTVGRNNFGQLGMG-ISTGDNIND--RIMKVDRIRDIFSIH 185

Query: 126 ASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIV---------PSRVEALAGEKIVK 176
            +   S AI   G ++ WG + +GQLG+G + T+            P+ +  +     V 
Sbjct: 186 FNQNNSMAISQSGRVYTWGANSKGQLGIGNNNTDPAKASDAGNRQPPTEIPGI--NNAVM 243

Query: 177 VSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIE 236
            ++G+ HAL    DG +  +G +  G++GN          ++N++R+S S   ++     
Sbjct: 244 GAYGFNHALILKSDGTVVAFGQNNVGQLGN---------GENNLNRNSFSSNPVN----- 289

Query: 237 KAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQL 296
                                  +V+   V+ +  G +HS  L  NG +   G N YG L
Sbjct: 290 -----------------------VVQLRNVIQVIAGSEHSAALTENGEVYVWGRNQYGNL 326

Query: 297 GR----EKQDMGMFPVDINFHP--VSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRS 350
           G         +   PV +   P    I++G  H LA+              I SWG N S
Sbjct: 327 GNGIVSPANTVQSVPVKVEGLPKIKQIANGRDHILALTYDGK---------IYSWGLNAS 377

Query: 351 SQLGRMGPDN 360
            QLG  G  N
Sbjct: 378 GQLGIGGNGN 387



 Score = 58.9 bits (141), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 63/244 (25%), Positives = 110/244 (45%), Gaps = 53/244 (21%)

Query: 65  DVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRG------ALESRA-TWNDPKRVEGLD 117
           D+ S+     +S+A++ +G V+ WG N++ QLG G      A  S A     P  + G++
Sbjct: 180 DIFSIHFNQNNSMAISQSGRVYTWGANSKGQLGIGNNNTDPAKASDAGNRQPPTEIPGIN 239

Query: 118 QVNVCA-AFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKD--ITEAIVPSRVEALAGEKI 174
              + A  F   ++   +  DG++  +G++  GQLG G++     +   + V  +    +
Sbjct: 240 NAVMGAYGFNHALI---LKSDGTVVAFGQNNVGQLGNGENNLNRNSFSSNPVNVVQLRNV 296

Query: 175 VKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSST 234
           ++V  G  H+ A TE+G+++ WG +   + GNLG  + S                  ++T
Sbjct: 297 IQVIAGSEHSAALTENGEVYVWGRN---QYGNLGNGIVS-----------------PANT 336

Query: 235 IEKAQKLVSEGMEKEKYMPIIWEPFLVEGV-EVVDIACGFDHSLVLGRNGVLLSCGSNVY 293
           ++                     P  VEG+ ++  IA G DH L L  +G + S G N  
Sbjct: 337 VQSV-------------------PVKVEGLPKIKQIANGRDHILALTYDGKIYSWGLNAS 377

Query: 294 GQLG 297
           GQLG
Sbjct: 378 GQLG 381



 Score = 51.6 bits (122), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 59/246 (23%), Positives = 108/246 (43%), Gaps = 56/246 (22%)

Query: 137 DGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGW 196
           +G L+  G++  GQLG+G    + I    ++      I  + F   +++A ++ G+++ W
Sbjct: 144 NGELYTVGRNNFGQLGMGISTGDNINDRIMKVDRIRDIFSIHFNQNNSMAISQSGRVYTW 203

Query: 197 GYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIW 256
           G ++ G++G +G        ++N D +  SD                 G  +        
Sbjct: 204 GANSKGQLG-IG--------NNNTDPAKASD----------------AGNRQP------- 231

Query: 257 EPFLVEGVE-VVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGM-----FPVDI 310
            P  + G+   V  A GF+H+L+L  +G +++ G N  GQLG  + ++        PV++
Sbjct: 232 -PTEIPGINNAVMGAYGFNHALILKSDGTVVAFGQNNVGQLGNGENNLNRNSFSSNPVNV 290

Query: 311 N--FHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGR--MGPDN----VP 362
               + + + +G  HS A+ E            +  WG N+   LG   + P N    VP
Sbjct: 291 VQLRNVIQVIAGSEHSAALTENGE---------VYVWGRNQYGNLGNGIVSPANTVQSVP 341

Query: 363 LVVEGL 368
           + VEGL
Sbjct: 342 VKVEGL 347


>gi|410908657|ref|XP_003967807.1| PREDICTED: secretion-regulating guanine nucleotide exchange
           factor-like [Takifugu rubripes]
          Length = 388

 Score = 89.0 bits (219), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 85/275 (30%), Positives = 127/275 (46%), Gaps = 35/275 (12%)

Query: 59  VPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGR----GALESRATWNDPKRVE 114
           V  L + V SV+AG  HSLAVT++G V+ WG     Q  R      + S  +   P  V 
Sbjct: 128 VESLKAAVVSVAAGLRHSLAVTDSGCVYQWGIGLMSQAKRTLSPSPVPSHLSSVLPSLVP 187

Query: 115 GLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKI 174
           GL+Q       A  +    + ++G L++WG +K  QL   +    +  P     L GE +
Sbjct: 188 GLNQKMSRVVAAGSMHCVCLTENGDLFLWGSNKHSQLLSSEPFLSSPTPVERSLLGGETV 247

Query: 175 VKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSST 234
           ++V  GW H +AQTE G++F WG    G  G LG+   +S   S+  +S+  DQE+    
Sbjct: 248 LRVWSGWTHIVAQTETGRVFTWGR---GNYGQLGR--HASTSQSSESQSTTEDQEV---- 298

Query: 235 IEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYG 294
                +L  E       +P +      +G     I CG +H+L +   G LLS G N +G
Sbjct: 299 -----RLPEE-------VPAL------QGA--TQITCGSEHNLAI-LGGRLLSWGWNEHG 337

Query: 295 QLGR-EKQDMGMFPVDINFHPVSISSGLGHSLAIC 328
             G     D+    +     P+ I  G GHS+A+C
Sbjct: 338 MCGDGSHADVFQPQLVPALRPLLIGCGAGHSMAVC 372



 Score = 62.4 bits (150), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 88/353 (24%), Positives = 138/353 (39%), Gaps = 67/353 (18%)

Query: 49  VGGDAYEPTRVPGL-------PSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGAL 101
           +G    E   VPGL          V  V+ G  H+  +T +G V+  G+N+  QLG G L
Sbjct: 8   LGHGGVEDRPVPGLCDAAALKDKAVRVVTGGGGHTAVITEDGEVFVCGQNHRGQLGLGHL 67

Query: 102 ESRATWNDPKRVEGLDQ--VNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITE 159
              +T    +R  GL Q   NV   +     +  + D G +   G +  GQLG+G+    
Sbjct: 68  TDISTL---QRCLGLTQTVTNVTCGWD---FTLFLTDSGRVLSCGSNAFGQLGIGQKPAY 121

Query: 160 AIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSN 219
                 VE+L    +V V+ G  H+LA T+ G ++ WG    G +    + L  SP+ S+
Sbjct: 122 TADVQIVESLKA-AVVSVAAGLRHSLAVTDSGCVYQWGI---GLMSQAKRTLSPSPVPSH 177

Query: 220 IDRSSES-----DQEISSSTIEKAQKLV----------------SEGMEKEKYM--PIIW 256
           +     S     +Q++S      +   V                S+ +  E ++  P   
Sbjct: 178 LSSVLPSLVPGLNQKMSRVVAAGSMHCVCLTENGDLFLWGSNKHSQLLSSEPFLSSPTPV 237

Query: 257 EPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGM----------- 305
           E  L+ G  V+ +  G+ H +     G + + G   YGQLGR                  
Sbjct: 238 ERSLLGGETVLRVWSGWTHIVAQTETGRVFTWGRGNYGQLGRHASTSQSSESQSTTEDQE 297

Query: 306 --FPVDINFH--PVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLG 354
              P ++        I+ G  H+LAI   R          ++SWGWN     G
Sbjct: 298 VRLPEEVPALQGATQITCGSEHNLAILGGR----------LLSWGWNEHGMCG 340



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 63/221 (28%), Positives = 95/221 (42%), Gaps = 58/221 (26%)

Query: 149 GQLGLGKDITEAIVPSRVEALA-GEKIVKV-SFGWGHALAQTEDGKLFGWGYSADGRIGN 206
           GQLG G  + +  VP   +A A  +K V+V + G GH    TEDG++F  G +  G++G 
Sbjct: 6   GQLGHG-GVEDRPVPGLCDAAALKDKAVRVVTGGGGHTAVITEDGEVFVCGQNHRGQLG- 63

Query: 207 LGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEV 266
           LG   + S                   T+++   L                        V
Sbjct: 64  LGHLTDIS-------------------TLQRCLGLTQT---------------------V 83

Query: 267 VDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDI----NFHPVSISSGLG 322
            ++ CG+D +L L  +G +LSCGSN +GQLG  ++      V I        VS+++GL 
Sbjct: 84  TNVTCGWDFTLFLTDSGRVLSCGSNAFGQLGIGQKPAYTADVQIVESLKAAVVSVAAGLR 143

Query: 323 HSLAICEVRSSNVTGGARGIVSWGWNRSSQLGR-MGPDNVP 362
           HSLA+ +         +  +  WG    SQ  R + P  VP
Sbjct: 144 HSLAVTD---------SGCVYQWGIGLMSQAKRTLSPSPVP 175


>gi|443688897|gb|ELT91442.1| hypothetical protein CAPTEDRAFT_169244 [Capitella teleta]
          Length = 1060

 Score = 89.0 bits (219), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 101/376 (26%), Positives = 162/376 (43%), Gaps = 56/376 (14%)

Query: 27  TAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPG-----LPSDVTSVSAGHYHSLAVTN 81
           ++V+ +G  + G LGL       GG   E   +P         +V  ++ G  H+L V  
Sbjct: 9   SSVLCWGSLTHGQLGL-------GGLEEETVTLPREIRSFCNVEVVHIACGLQHTLFVKK 61

Query: 82  NGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLW 141
           +G V + G N+  QLG      R     P  ++ L + NV  A +    S+ + D G ++
Sbjct: 62  DGRVLSCGNNDYGQLGHEKPCKR-----PALIDSLGERNVLQASSGTKHSTVLTDAGQVF 116

Query: 142 VWGKSKRGQLGLGK-DITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSA 200
            WG ++  QLG G+ D     +P  V  LA  K+V+V+ G  H +  T  G+++ WG + 
Sbjct: 117 TWGSNEDNQLGRGQVDSASTSIPRMVRGLADHKVVQVACGSAHTVGLTATGQIYTWGSNN 176

Query: 201 DGRIGNLGKALESSPL------DSNIDRSSESDQEISSSTIEKAQKL--------VSEGM 246
            G++G   K  ++ P          I R +         TI  A           +  G 
Sbjct: 177 HGQLGLANKTPQNEPQWVSCISGLPIVRVAAGADHNLVLTISGALFAWGCNSFGQLGVGD 236

Query: 247 EKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMF 306
           ++++  P + +    +G  +  +ACG DHSL L R+G + + G+ +YGQLG    +  + 
Sbjct: 237 DQDRGAPTLVKTLRNQG--ICALACGDDHSLALTRDGGVFTFGAGMYGQLGHNTSNNELL 294

Query: 307 PVDINFHPV-----SISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLG------R 355
           P  + F  +      I+ G  HS+A        V    R  V +G   + QLG      R
Sbjct: 295 PRKV-FELMGSSVTQIACGRKHSIAY-------VPSSGRVYV-FGLGGNGQLGTGSTVNR 345

Query: 356 MGPDNV--PLVVEGLE 369
           M P  V  P V  G E
Sbjct: 346 MSPAMVKGPFVAFGAE 361



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 75/299 (25%), Positives = 125/299 (41%), Gaps = 67/299 (22%)

Query: 84  AVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSA-IGDDGSLWV 142
           +V  WG     QLG G LE   T   P+ +     V V    A G+  +  +  DG +  
Sbjct: 10  SVLCWGSLTHGQLGLGGLEEE-TVTLPREIRSFCNVEV-VHIACGLQHTLFVKKDGRVLS 67

Query: 143 WGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADG 202
            G +  GQLG  K       P+ +++L    +++ S G  H+   T+ G++F WG + D 
Sbjct: 68  CGNNDYGQLGHEKPCKR---PALIDSLGERNVLQASSGTKHSTVLTDAGQVFTWGSNEDN 124

Query: 203 RIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVE 262
           ++G              +D +S S                               P +V 
Sbjct: 125 QLGR-----------GQVDSASTS------------------------------IPRMVR 143

Query: 263 GV---EVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLG---REKQDMGMFPVDINFHP-V 315
           G+   +VV +ACG  H++ L   G + + GSN +GQLG   +  Q+   +   I+  P V
Sbjct: 144 GLADHKVVQVACGSAHTVGLTATGQIYTWGSNNHGQLGLANKTPQNEPQWVSCISGLPIV 203

Query: 316 SISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPDN---VPLVVEGLEGE 371
            +++G  H+L +       ++G    + +WG N   QLG +G D     P +V+ L  +
Sbjct: 204 RVAAGADHNLVL------TISG---ALFAWGCNSFGQLG-VGDDQDRGAPTLVKTLRNQ 252


>gi|395501386|ref|XP_003755076.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC4 isoform 3
           [Sarcophilus harrisii]
          Length = 979

 Score = 89.0 bits (219), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 77/316 (24%), Positives = 130/316 (41%), Gaps = 49/316 (15%)

Query: 55  EPTRVPGLPS-DVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRV 113
           +P +V  L + ++ +VS G  H+LA+ + G V+AWG + + QLG    E       P+ +
Sbjct: 74  KPEQVVALDAQNIVAVSCGEAHTLALNDKGQVYAWGLDTDGQLGLPGTEEYI--RVPRNI 131

Query: 114 EGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEK 173
           + L  + +         S A+     ++ WG++K GQLGLG ++     P  +++L G  
Sbjct: 132 KSLTDIQIVQIACGYYHSLALSKGSEVFSWGQNKHGQLGLGFELKRQSSPQLIKSLLGIP 191

Query: 174 IVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSS 233
             +V+ G  H+   T  G +FGWG +   + G LG   E+     N+ +S  S +     
Sbjct: 192 FTQVAAGGAHSFVLTLSGAIFGWGRN---KFGQLGLNDENDRFVPNLLKSLRSQK----- 243

Query: 234 TIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVY 293
                                           +V I CG DH+  L + G + + G+  Y
Sbjct: 244 --------------------------------IVYICCGEDHTAALTKEGGVFTFGAGGY 271

Query: 294 GQLGREKQDMGMFPVDINFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQL 353
           GQLG       + P  +      +   +   +A     +S     +  I S+G   + QL
Sbjct: 272 GQLGHNSTSHEINPRKV----FELMGSIVTQIACGRQHTSAFVPSSGRIYSFGLGGNGQL 327

Query: 354 GRMGPDN--VPLVVEG 367
           G     N   P  V+G
Sbjct: 328 GTGSTSNRKSPFTVKG 343



 Score = 68.9 bits (167), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 71/272 (26%), Positives = 111/272 (40%), Gaps = 55/272 (20%)

Query: 87  AWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKS 146
            WG  +  QLG G ++      +P++ +      V         +  + DDG+++  G +
Sbjct: 3   CWGNASFGQLGLGGIDEEIVL-EPRKSDFFINKKVQDVGCGLRHTVFVLDDGTVYTCGCN 61

Query: 147 KRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGN 206
             GQLG  K   +   P +V AL  + IV VS G  H LA  + G+++ WG   DG++G 
Sbjct: 62  DLGQLGHEKSRKK---PEQVVALDAQNIVAVSCGEAHTLALNDKGQVYAWGLDTDGQLGL 118

Query: 207 LGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEV 266
            G                                        E+Y+ +      +  +++
Sbjct: 119 PGT---------------------------------------EEYIRVPRNIKSLTDIQI 139

Query: 267 VDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFHPVSISSGLGHSLA 326
           V IACG+ HSL L +   + S G N +GQLG     +G F +     P  I S LG  + 
Sbjct: 140 VQIACGYYHSLALSKGSEVFSWGQNKHGQLG-----LG-FELKRQSSPQLIKSLLG--IP 191

Query: 327 ICEVRS----SNVTGGARGIVSWGWNRSSQLG 354
             +V +    S V   +  I  WG N+  QLG
Sbjct: 192 FTQVAAGGAHSFVLTLSGAIFGWGRNKFGQLG 223



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 53/194 (27%), Positives = 87/194 (44%), Gaps = 8/194 (4%)

Query: 24  ASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNG 83
           + G+ V S+G    G LGL   L          + + G+P   T V+AG  HS  +T +G
Sbjct: 153 SKGSEVFSWGQNKHGQLGLGFELKRQSSPQLIKSLL-GIP--FTQVAAGGAHSFVLTLSG 209

Query: 84  AVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVW 143
           A++ WGRN   QLG      R   N  K +     V +C        ++A+  +G ++ +
Sbjct: 210 AIFGWGRNKFGQLGLNDENDRFVPNLLKSLRSQKIVYICCGEDH---TAALTKEGGVFTF 266

Query: 144 GKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQT-EDGKLFGWGYSADG 202
           G    GQLG     +  I P +V  L G  + +++ G  H  A     G+++ +G   +G
Sbjct: 267 GAGGYGQLG-HNSTSHEINPRKVFELMGSIVTQIACGRQHTSAFVPSSGRIYSFGLGGNG 325

Query: 203 RIGNLGKALESSPL 216
           ++G    +   SP 
Sbjct: 326 QLGTGSTSNRKSPF 339


>gi|417764320|ref|ZP_12412289.1| chromosome condensation regulator RCC1 repeat protein [Leptospira
           interrogans serovar Bulgarica str. Mallika]
 gi|418692186|ref|ZP_13253265.1| chromosome condensation regulator RCC1 repeat protein [Leptospira
           interrogans str. FPW2026]
 gi|400353469|gb|EJP05640.1| chromosome condensation regulator RCC1 repeat protein [Leptospira
           interrogans serovar Bulgarica str. Mallika]
 gi|400357976|gb|EJP14095.1| chromosome condensation regulator RCC1 repeat protein [Leptospira
           interrogans str. FPW2026]
          Length = 506

 Score = 89.0 bits (219), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 89/295 (30%), Positives = 138/295 (46%), Gaps = 30/295 (10%)

Query: 29  VVSFGDGSQGALGLPTSLTGVG-----GDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNG 83
           V ++G  S+G LG+  + T        G+   PT +PG+ +D    + G  H+L + ++G
Sbjct: 199 VYTWGANSKGQLGIGNNNTDPARASDPGNRQPPTEIPGI-NDAVMGAYGFNHALVLKSDG 257

Query: 84  AVWAWGRNNEVQLGRGA--LESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLW 141
            V A+G+NN  QLG G   L   +  ++P  V  L   NV    A    S+A+ ++G ++
Sbjct: 258 TVVAFGQNNVGQLGNGENNLNRNSFSSNPVNVVQLR--NVIQVIAGSEHSAALTENGEVY 315

Query: 142 VWGKSKRGQLGLG---KDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGY 198
           +WGK++ G LG G      T   VP +VE L+  KI +++ G  H LA T DGK++ WG 
Sbjct: 316 IWGKNQYGNLGNGIISPANTVQSVPVKVEGLS--KIKQIANGRDHILALTSDGKIYSWGL 373

Query: 199 SADGRIGNLGKALESSPLDSNIDRSSESDQEI-----SSSTIEKAQKLVSEGME------ 247
           +A G++G  G              + +    I      S  I K+ ++   G        
Sbjct: 374 NASGQLGIGGNGNPPPTPIPTQILNIQDVASIWAGGTQSFAILKSGEVKGWGANGNMASL 433

Query: 248 --KEKYMPIIWEPF-LVEGVE-VVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGR 298
              E     ++EP   V G++ VV   CG  H+  L  NG +   G N  G LGR
Sbjct: 434 ALGESNTQKVYEPNKAVVGIDNVVHFGCGATHNFALLGNGEIYGWGWNFKGSLGR 488



 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 82/315 (26%), Positives = 126/315 (40%), Gaps = 78/315 (24%)

Query: 67  TSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRG-----ALESRATWNDPKRVEGLDQVNV 121
           T +SAG  HS  + N G ++  GRNN  QLG G      +  R    DP R       ++
Sbjct: 129 TKLSAGGAHSGFLIN-GELYTVGRNNFGQLGTGISTGDGINDRIVKVDPIR-------DI 180

Query: 122 CAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSR----------VEALAG 171
            +   +   S AI  +G ++ WG + +GQLG+G + T+   P+R           E    
Sbjct: 181 FSIHFNQNNSMAISQNGRVYTWGANSKGQLGIGNNNTD---PARASDPGNRQPPTEIPGI 237

Query: 172 EKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEIS 231
              V  ++G+ HAL    DG +  +G +  G++GN          ++N++R+S S   ++
Sbjct: 238 NDAVMGAYGFNHALVLKSDGTVVAFGQNNVGQLGN---------GENNLNRNSFSSNPVN 288

Query: 232 SSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSN 291
                                       +V+   V+ +  G +HS  L  NG +   G N
Sbjct: 289 ----------------------------VVQLRNVIQVIAGSEHSAALTENGEVYIWGKN 320

Query: 292 VYGQLGR----EKQDMGMFPVDIN--FHPVSISSGLGHSLAICEVRSSNVTGGARGIVSW 345
            YG LG         +   PV +        I++G  H LA+              I SW
Sbjct: 321 QYGNLGNGIISPANTVQSVPVKVEGLSKIKQIANGRDHILALTSDGK---------IYSW 371

Query: 346 GWNRSSQLGRMGPDN 360
           G N S QLG  G  N
Sbjct: 372 GLNASGQLGIGGNGN 386



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 65/243 (26%), Positives = 107/243 (44%), Gaps = 51/243 (20%)

Query: 65  DVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALES---RAT----WNDPKRVEGL- 116
           D+ S+     +S+A++ NG V+ WG N++ QLG G   +   RA+       P  + G+ 
Sbjct: 179 DIFSIHFNQNNSMAISQNGRVYTWGANSKGQLGIGNNNTDPARASDPGNRQPPTEIPGIN 238

Query: 117 DQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDIT--EAIVPSRVEALAGEKI 174
           D V     F   +V   +  DG++  +G++  GQLG G++     +   + V  +    +
Sbjct: 239 DAVMGAYGFNHALV---LKSDGTVVAFGQNNVGQLGNGENNLNRNSFSSNPVNVVQLRNV 295

Query: 175 VKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSST 234
           ++V  G  H+ A TE+G+++ WG     + GNLG  +                  IS + 
Sbjct: 296 IQVIAGSEHSAALTENGEVYIWG---KNQYGNLGNGI------------------ISPAN 334

Query: 235 IEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYG 294
             ++  +  EG+ K K                  IA G DH L L  +G + S G N  G
Sbjct: 335 TVQSVPVKVEGLSKIK-----------------QIANGRDHILALTSDGKIYSWGLNASG 377

Query: 295 QLG 297
           QLG
Sbjct: 378 QLG 380


>gi|357520079|ref|XP_003630328.1| RCC1 and BTB domain-containing protein [Medicago truncatula]
 gi|355524350|gb|AET04804.1| RCC1 and BTB domain-containing protein [Medicago truncatula]
          Length = 316

 Score = 89.0 bits (219), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 63/186 (33%), Positives = 94/186 (50%), Gaps = 11/186 (5%)

Query: 22  RSASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPS-DVTSVSAGHYHSLAVT 80
           RS SG  V S+G G  G LG      G   D + P  +  L    +  +S G  H LAVT
Sbjct: 116 RSKSGKDVYSWGWGDFGRLG-----HGDPSDLFIPHPIRALQGLRIKQISCGDCHCLAVT 170

Query: 81  NNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSL 140
               V +WGRN   +LG G  +       P+++   + + +    A    S AI +DG L
Sbjct: 171 MENKVLSWGRNQNGELGLGTTKDSHV---PQKILAFEGIRIKMVAAGAEHSVAITEDGDL 227

Query: 141 WVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSA 200
           + WG  + G LGLG D  + ++P +V  + G+KIV VS GW H ++ +  G L+  G+S 
Sbjct: 228 YGWGWGRYGNLGLG-DTNDRLIPEKVN-IDGDKIVMVSCGWRHTISISSSGGLYTHGWSK 285

Query: 201 DGRIGN 206
            G++G+
Sbjct: 286 YGQLGH 291



 Score = 82.8 bits (203), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 77/284 (27%), Positives = 128/284 (45%), Gaps = 52/284 (18%)

Query: 26  GTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLP-SDVTSVSAGHYHSLAVTNNGA 84
           G  V S+G G  G LG      G   D   PT++      D+ SV+ G  +++A + +G 
Sbjct: 67  GNVVCSWGRGEDGQLG-----HGDTDDRLLPTKLSAFDGQDIVSVTCGADYTVARSKSGK 121

Query: 85  -VWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVW 143
            V++WG  +  +LG G          P  +  L  + +           A+  +  +  W
Sbjct: 122 DVYSWGWGDFGRLGHGDPSDLFI---PHPIRALQGLRIKQISCGDCHCLAVTMENKVLSW 178

Query: 144 GKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGR 203
           G+++ G+LGLG    ++ VP ++ A  G +I  V+ G  H++A TEDG L+GWG+   GR
Sbjct: 179 GRNQNGELGLGT-TKDSHVPQKILAFEGIRIKMVAAGAEHSVAITEDGDLYGWGW---GR 234

Query: 204 IGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEG 263
            GNLG        D+N DR                               +I E   ++G
Sbjct: 235 YGNLGLG------DTN-DR-------------------------------LIPEKVNIDG 256

Query: 264 VEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFP 307
            ++V ++CG+ H++ +  +G L + G + YGQLG    +  + P
Sbjct: 257 DKIVMVSCGWRHTISISSSGGLYTHGWSKYGQLGHGDFEDCLVP 300



 Score = 74.7 bits (182), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 75/289 (25%), Positives = 118/289 (40%), Gaps = 57/289 (19%)

Query: 85  VWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWG 144
           V +WGR  + QLG G  + R         +G D V+V       V  S  G D   W WG
Sbjct: 70  VCSWGRGEDGQLGHGDTDDRLLPTKLSAFDGQDIVSVTCGADYTVARSKSGKDVYSWGWG 129

Query: 145 KSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRI 204
               G+LG G D ++  +P  + AL G +I ++S G  H LA T + K+  WG + +G +
Sbjct: 130 DF--GRLGHG-DPSDLFIPHPIRALQGLRIKQISCGDCHCLAVTMENKVLSWGRNQNGEL 186

Query: 205 GNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGV 264
           G                                       G  K+ ++P     F  EG+
Sbjct: 187 G--------------------------------------LGTTKDSHVPQKILAF--EGI 206

Query: 265 EVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINF---HPVSISSGL 321
            +  +A G +HS+ +  +G L   G   YG LG    +  + P  +N      V +S G 
Sbjct: 207 RIKMVAAGAEHSVAITEDGDLYGWGWGRYGNLGLGDTNDRLIPEKVNIDGDKIVMVSCGW 266

Query: 322 GHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPDN--VPLVVEGL 368
            H+++I           + G+ + GW++  QLG    ++  VP  V+ L
Sbjct: 267 RHTISI---------SSSGGLYTHGWSKYGQLGHGDFEDCLVPRKVQAL 306


>gi|81885004|sp|Q6NXM2.1|RCBT1_MOUSE RecName: Full=RCC1 and BTB domain-containing protein 1; AltName:
           Full=Regulator of chromosome condensation and BTB
           domain-containing protein 1
 gi|44890811|gb|AAH67005.1| Regulator of chromosome condensation (RCC1) and BTB (POZ) domain
           containing protein 1 [Mus musculus]
          Length = 531

 Score = 89.0 bits (219), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 58/180 (32%), Positives = 92/180 (51%), Gaps = 5/180 (2%)

Query: 62  LPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNV 121
           L   V  V+ G +HS+A+  +G ++AWG NN  Q+G G+  ++ T   P++V        
Sbjct: 126 LIKQVIEVACGSHHSMALAADGELFAWGYNNCGQVGSGSTANQPT---PRKVTNCLHTKR 182

Query: 122 CAAFASGVVSS-AIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFG 180
               A G  SS A+ D G ++ WG +  GQLGLG +  + + P RV AL G  + ++  G
Sbjct: 183 VVNIACGQTSSMAVLDSGEVYGWGYNGNGQLGLGNNGNQ-LTPVRVAALHGMCVNQIVCG 241

Query: 181 WGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQK 240
           + H LA T++G L+ WG +  G++G   K    SP    +++    +     ST   A K
Sbjct: 242 YAHTLALTDEGLLYAWGANTYGQLGTGSKNNLLSPTQIMVEKERVIEIAACHSTHTSAAK 301



 Score = 79.0 bits (193), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 72/293 (24%), Positives = 116/293 (39%), Gaps = 67/293 (22%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLP-SDVTSVSAGH-YHSLAVTNNGAVW 86
           V  FG      LG     TG       P ++  L    + S+S G   H L  T +G V+
Sbjct: 43  VFVFGLNYSNCLG-----TGDNQSTLVPKKLEALCGKKIKSLSYGSGPHVLLTTEDGVVY 97

Query: 87  AWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVV---------SSAIGDD 137
           AWG N   QLG G              +G+  V VC       V         S A+  D
Sbjct: 98  AWGHNGYSQLGNGTTN-----------QGIAPVQVCTNLLIKQVIEVACGSHHSMALAAD 146

Query: 138 GSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWG 197
           G L+ WG +  GQ+G G    +         L  +++V ++ G   ++A  + G+++GWG
Sbjct: 147 GELFAWGYNNCGQVGSGSTANQPTPRKVTNCLHTKRVVNIACGQTSSMAVLDSGEVYGWG 206

Query: 198 YSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWE 257
           Y+ +G++G      + +P+             +++                         
Sbjct: 207 YNGNGQLGLGNNGNQLTPV------------RVAA------------------------- 229

Query: 258 PFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDI 310
              + G+ V  I CG+ H+L L   G+L + G+N YGQLG   ++  + P  I
Sbjct: 230 ---LHGMCVNQIVCGYAHTLALTDEGLLYAWGANTYGQLGTGSKNNLLSPTQI 279



 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 66/246 (26%), Positives = 106/246 (43%), Gaps = 59/246 (23%)

Query: 134 IGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWG-HALAQTEDGK 192
           + D+  ++V+G +    LG G D    +VP ++EAL G+KI  +S+G G H L  TEDG 
Sbjct: 37  VTDNDEVFVFGLNYSNCLGTG-DNQSTLVPKKLEALCGKKIKSLSYGSGPHVLLTTEDGV 95

Query: 193 LFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYM 252
           ++ WG++   ++GN                                      G   +   
Sbjct: 96  VYAWGHNGYSQLGN--------------------------------------GTTNQGIA 117

Query: 253 PI-IWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDIN 311
           P+ +    L++  +V+++ACG  HS+ L  +G L + G N  GQ+G         P  + 
Sbjct: 118 PVQVCTNLLIK--QVIEVACGSHHSMALAADGELFAWGYNNCGQVGSGSTANQPTPRKVT 175

Query: 312 --FHP---VSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQ--LGRMGPDNVPLV 364
              H    V+I+ G   S+A+  + S  V G       WG+N + Q  LG  G    P+ 
Sbjct: 176 NCLHTKRVVNIACGQTSSMAV--LDSGEVYG-------WGYNGNGQLGLGNNGNQLTPVR 226

Query: 365 VEGLEG 370
           V  L G
Sbjct: 227 VAALHG 232


>gi|18073943|emb|CAC86116.1| retinitis pigmentosa GTPase regulator [Homo sapiens]
          Length = 815

 Score = 89.0 bits (219), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 79/267 (29%), Positives = 123/267 (46%), Gaps = 51/267 (19%)

Query: 32  FGDGSQGALGLPTSLTGVGGDAYEPTRVPGL-PSDVTSVSAGHYHSLAVTNNGAVWAWGR 90
           FG  + G LGL     G      +PT V  L P  V   + G  H+L  T  G V+A G 
Sbjct: 59  FGSNNWGQLGL-----GSKSAISKPTCVKALKPEKVKLAACGRNHTLVSTEGGNVYATGG 113

Query: 91  NNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQ 150
           NNE QLG G  E R T++         ++   +A ++   S+A+ +DG L++WG +  GQ
Sbjct: 114 NNEGQLGLGDTEERNTFHVISFFTSEHKIKQLSAGSN--TSAALTEDGRLFMWGDNSEGQ 171

Query: 151 LGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKA 210
           +GL K+++   VP +V    G  +  +S G+ H+   T DG+L+ +G   +G++G   + 
Sbjct: 172 IGL-KNVSNVCVPQQV--TIGNPVSWISCGYYHSAFVTTDGELYVFGEPENGKLGLPNQL 228

Query: 211 LESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIA 270
           L +                       +  +LVSE  EK                 V+ +A
Sbjct: 229 LGN----------------------HRTPQLVSEIPEK-----------------VIQVA 249

Query: 271 CGFDHSLVLGRNGVLLSCGSNVYGQLG 297
           CG +H++VL  N V  + G   +GQLG
Sbjct: 250 CGGEHTVVLTENAV-YTFGLGQFGQLG 275



 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 49/140 (35%), Positives = 75/140 (53%), Gaps = 9/140 (6%)

Query: 69  VSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGL--DQVNVCAAFA 126
           +S G  HS  VT N  ++ +G NN  QLG G   S++  + P  V+ L  ++V + A   
Sbjct: 40  LSCGDEHSAVVTGNNKLYMFGSNNWGQLGLG---SKSAISKPTCVKALKPEKVKLAACGR 96

Query: 127 SGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGE-KIVKVSFGWGHAL 185
           +  + S  G  G+++  G +  GQLGLG D  E      +     E KI ++S G   + 
Sbjct: 97  NHTLVSTEG--GNVYATGGNNEGQLGLG-DTEERNTFHVISFFTSEHKIKQLSAGSNTSA 153

Query: 186 AQTEDGKLFGWGYSADGRIG 205
           A TEDG+LF WG +++G+IG
Sbjct: 154 ALTEDGRLFMWGDNSEGQIG 173



 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 53/184 (28%), Positives = 90/184 (48%), Gaps = 18/184 (9%)

Query: 33  GDGSQGALGLPTSLTGVGGDAYEPTRVP-GLPSDVTSVSAGHYHSLAVTNNGAVWAWGRN 91
           GD S+G +GL         +   P +V  G P  V+ +S G+YHS  VT +G ++ +G  
Sbjct: 165 GDNSEGQIGLKNV-----SNVCVPQQVTIGNP--VSWISCGYYHSAFVTTDGELYVFG-- 215

Query: 92  NEVQLGRGALESRATWND--PKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRG 149
            E + G+  L ++   N   P+ V  + +  +    A G   + +  + +++ +G  + G
Sbjct: 216 -EPENGKLGLPNQLLGNHRTPQLVSEIPEKVI--QVACGGEHTVVLTENAVYTFGLGQFG 272

Query: 150 QLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGK 209
           QLGLG  + E   P  +E +  + I  +S G  H    T+ G ++ +G   DGR G LG 
Sbjct: 273 QLGLGTFLFETSEPKVIENIRDQTISYISCGENHTALITDIGLMYTFG---DGRHGKLGL 329

Query: 210 ALES 213
            LE+
Sbjct: 330 GLEN 333


>gi|410947356|ref|XP_003980415.1| PREDICTED: RCC1 and BTB domain-containing protein 1 [Felis catus]
          Length = 531

 Score = 89.0 bits (219), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 54/162 (33%), Positives = 88/162 (54%), Gaps = 5/162 (3%)

Query: 62  LPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNV 121
           L   V  V+ G +HS+A+  +G V+AWG NN  Q+G G+  ++ T   P++V     +  
Sbjct: 126 LIKQVVEVACGSHHSMALAADGEVFAWGYNNCGQVGSGSTTNQPT---PRKVTNCLHIKR 182

Query: 122 CAAFASGVVSS-AIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFG 180
               A G  SS A+ D+G ++ WG +  GQLGLG +  + + P RV AL    + ++  G
Sbjct: 183 VVGIACGQTSSMAVLDNGEVYGWGYNGNGQLGLGNNGNQ-LTPVRVAALHSVCVNQIVCG 241

Query: 181 WGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDR 222
           + H LA T++G L+ WG +  G++G   K    SP    +++
Sbjct: 242 YAHTLALTDEGLLYAWGANTYGQLGTGNKNNLLSPAHIMVEK 283



 Score = 74.3 bits (181), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 70/293 (23%), Positives = 116/293 (39%), Gaps = 67/293 (22%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLP-SDVTSVSAGH-YHSLAVTNNGAVW 86
           V  FG      LG     TG       P ++  L    + S+S G   H L  T +G V+
Sbjct: 43  VFVFGLNYSNCLG-----TGDNQSTLVPKKLEALCGKKIKSLSYGSGPHVLLSTEDGVVY 97

Query: 87  AWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVV---------SSAIGDD 137
           AWG N   QLG G              +G+  + VC       V         S A+  D
Sbjct: 98  AWGHNGYSQLGNGTTN-----------QGIAPIQVCTNLLIKQVVEVACGSHHSMALAAD 146

Query: 138 GSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWG 197
           G ++ WG +  GQ+G G    +         L  +++V ++ G   ++A  ++G+++GWG
Sbjct: 147 GEVFAWGYNNCGQVGSGSTTNQPTPRKVTNCLHIKRVVGIACGQTSSMAVLDNGEVYGWG 206

Query: 198 YSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWE 257
           Y+ +G++G      + +P+             +++                         
Sbjct: 207 YNGNGQLGLGNNGNQLTPV------------RVAA------------------------- 229

Query: 258 PFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDI 310
              +  V V  I CG+ H+L L   G+L + G+N YGQLG   ++  + P  I
Sbjct: 230 ---LHSVCVNQIVCGYAHTLALTDEGLLYAWGANTYGQLGTGNKNNLLSPAHI 279



 Score = 68.2 bits (165), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 76/293 (25%), Positives = 128/293 (43%), Gaps = 60/293 (20%)

Query: 76  SLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCA-AFASGVVSSAI 134
           +L VT+N  V+ +G N    LG G  +S      PK++E L    + + ++ SG      
Sbjct: 34  ALYVTDNDEVFVFGLNYSNCLGTGDNQSTLV---PKKLEALCGKKIKSLSYGSGPHVLLS 90

Query: 135 GDDGSLWVWGKSKRGQLGLGKDITEAIVPSRV-EALAGEKIVKVSFGWGHALAQTEDGKL 193
            +DG ++ WG +   QLG G    + I P +V   L  +++V+V+ G  H++A   DG++
Sbjct: 91  TEDGVVYAWGHNGYSQLGNGT-TNQGIAPIQVCTNLLIKQVVEVACGSHHSMALAADGEV 149

Query: 194 FGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMP 253
           F WGY+  G++G+                         S+T +   + V+  +  ++   
Sbjct: 150 FAWGYNNCGQVGS------------------------GSTTNQPTPRKVTNCLHIKR--- 182

Query: 254 IIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDI-NF 312
                       VV IACG   S+ +  NG +   G N  GQLG       + PV +   
Sbjct: 183 ------------VVGIACGQTSSMAVLDNGEVYGWGYNGNGQLGLGNNGNQLTPVRVAAL 230

Query: 313 HPVSIS---SGLGHSLAICEVRSSNVTGGARGIV-SWGWNRSSQLGRMGPDNV 361
           H V ++    G  H+LA+ +           G++ +WG N   QLG    +N+
Sbjct: 231 HSVCVNQIVCGYAHTLALTD----------EGLLYAWGANTYGQLGTGNKNNL 273


>gi|395501384|ref|XP_003755075.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC4 isoform 2
           [Sarcophilus harrisii]
          Length = 1049

 Score = 89.0 bits (219), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 77/316 (24%), Positives = 130/316 (41%), Gaps = 49/316 (15%)

Query: 55  EPTRVPGLPS-DVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRV 113
           +P +V  L + ++ +VS G  H+LA+ + G V+AWG + + QLG    E       P+ +
Sbjct: 74  KPEQVVALDAQNIVAVSCGEAHTLALNDKGQVYAWGLDTDGQLGLPGTEEYI--RVPRNI 131

Query: 114 EGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEK 173
           + L  + +         S A+     ++ WG++K GQLGLG ++     P  +++L G  
Sbjct: 132 KSLTDIQIVQIACGYYHSLALSKGSEVFSWGQNKHGQLGLGFELKRQSSPQLIKSLLGIP 191

Query: 174 IVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSS 233
             +V+ G  H+   T  G +FGWG +   + G LG   E+     N+ +S  S +     
Sbjct: 192 FTQVAAGGAHSFVLTLSGAIFGWGRN---KFGQLGLNDENDRFVPNLLKSLRSQK----- 243

Query: 234 TIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVY 293
                                           +V I CG DH+  L + G + + G+  Y
Sbjct: 244 --------------------------------IVYICCGEDHTAALTKEGGVFTFGAGGY 271

Query: 294 GQLGREKQDMGMFPVDINFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQL 353
           GQLG       + P  +      +   +   +A     +S     +  I S+G   + QL
Sbjct: 272 GQLGHNSTSHEINPRKV----FELMGSIVTQIACGRQHTSAFVPSSGRIYSFGLGGNGQL 327

Query: 354 GRMGPDN--VPLVVEG 367
           G     N   P  V+G
Sbjct: 328 GTGSTSNRKSPFTVKG 343



 Score = 68.9 bits (167), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 71/272 (26%), Positives = 111/272 (40%), Gaps = 55/272 (20%)

Query: 87  AWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKS 146
            WG  +  QLG G ++      +P++ +      V         +  + DDG+++  G +
Sbjct: 3   CWGNASFGQLGLGGIDEEIVL-EPRKSDFFINKKVQDVGCGLRHTVFVLDDGTVYTCGCN 61

Query: 147 KRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGN 206
             GQLG  K   +   P +V AL  + IV VS G  H LA  + G+++ WG   DG++G 
Sbjct: 62  DLGQLGHEKSRKK---PEQVVALDAQNIVAVSCGEAHTLALNDKGQVYAWGLDTDGQLGL 118

Query: 207 LGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEV 266
            G                                        E+Y+ +      +  +++
Sbjct: 119 PGT---------------------------------------EEYIRVPRNIKSLTDIQI 139

Query: 267 VDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFHPVSISSGLGHSLA 326
           V IACG+ HSL L +   + S G N +GQLG     +G F +     P  I S LG  + 
Sbjct: 140 VQIACGYYHSLALSKGSEVFSWGQNKHGQLG-----LG-FELKRQSSPQLIKSLLG--IP 191

Query: 327 ICEVRS----SNVTGGARGIVSWGWNRSSQLG 354
             +V +    S V   +  I  WG N+  QLG
Sbjct: 192 FTQVAAGGAHSFVLTLSGAIFGWGRNKFGQLG 223



 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 53/194 (27%), Positives = 87/194 (44%), Gaps = 8/194 (4%)

Query: 24  ASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNG 83
           + G+ V S+G    G LGL   L          + + G+P   T V+AG  HS  +T +G
Sbjct: 153 SKGSEVFSWGQNKHGQLGLGFELKRQSSPQLIKSLL-GIP--FTQVAAGGAHSFVLTLSG 209

Query: 84  AVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVW 143
           A++ WGRN   QLG      R   N  K +     V +C        ++A+  +G ++ +
Sbjct: 210 AIFGWGRNKFGQLGLNDENDRFVPNLLKSLRSQKIVYICCGEDH---TAALTKEGGVFTF 266

Query: 144 GKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQT-EDGKLFGWGYSADG 202
           G    GQLG     +  I P +V  L G  + +++ G  H  A     G+++ +G   +G
Sbjct: 267 GAGGYGQLG-HNSTSHEINPRKVFELMGSIVTQIACGRQHTSAFVPSSGRIYSFGLGGNG 325

Query: 203 RIGNLGKALESSPL 216
           ++G    +   SP 
Sbjct: 326 QLGTGSTSNRKSPF 339


>gi|270001313|gb|EEZ97760.1| hect domain and RLD 2-like protein [Tribolium castaneum]
          Length = 816

 Score = 89.0 bits (219), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 59/196 (30%), Positives = 98/196 (50%), Gaps = 13/196 (6%)

Query: 23  SASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSD-VTSVSAGHY--HSLAV 79
           SA+G A+ ++G G+ G LG      G   D   PT +  L  + +  V+ G +  H+L +
Sbjct: 583 SANG-ALYTWGRGNYGRLG-----HGTAEDCLTPTMISALSDEHIIKVACGSFYAHTLCI 636

Query: 80  TNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGS 139
           T+ G V++WG  +  +LGRG  +       P+ +E L  V +   +     S A+ +DG 
Sbjct: 637 TSQGKVYSWGDGDYGKLGRGGSDGSKL---PRLIEKLQNVKIVQVYCGAQFSVALSEDGH 693

Query: 140 LWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYS 199
           ++ WGK +  +LG   +      P  VE L   K+V VS G  H LA T+ G+++GWG +
Sbjct: 694 VYTWGKGEGWKLGHPTE-ENVRFPEMVEVLRDRKVVGVSLGVSHVLALTDQGEVYGWGKN 752

Query: 200 ADGRIGNLGKALESSP 215
            + +I +  +     P
Sbjct: 753 ENKQICDSSELFVQQP 768



 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 81/305 (26%), Positives = 131/305 (42%), Gaps = 61/305 (20%)

Query: 75  HSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAI 134
           H LA+T +  V++WG  +  +LG G     +T  +P  ++ L   ++      G  S+AI
Sbjct: 526 HYLALTKDYEVYSWGNGDGGRLGHG---DTSTKEEPTLIQALKGKDIIDVECGGTYSAAI 582

Query: 135 GDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFG--WGHALAQTEDGK 192
             +G+L+ WG+   G+LG G    + + P+ + AL+ E I+KV+ G  + H L  T  GK
Sbjct: 583 SANGALYTWGRGNYGRLGHGT-AEDCLTPTMISALSDEHIIKVACGSFYAHTLCITSQGK 641

Query: 193 LFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYM 252
           ++ WG   DG  G LG+                SD       IEK Q             
Sbjct: 642 VYSWG---DGDYGKLGRG--------------GSDGSKLPRLIEKLQ------------- 671

Query: 253 PIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFP----V 308
                      V++V + CG   S+ L  +G + + G     +LG   ++   FP    V
Sbjct: 672 ----------NVKIVQVYCGAQFSVALSEDGHVYTWGKGEGWKLGHPTEENVRFPEMVEV 721

Query: 309 DINFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPDNV--PLVVE 366
             +   V +S G+ H LA+ +       G   G   WG N + Q+       V  P ++E
Sbjct: 722 LRDRKVVGVSLGVSHVLALTD------QGEVYG---WGKNENKQICDSSELFVQQPRLIE 772

Query: 367 GLEGE 371
            L+G+
Sbjct: 773 ALKGQ 777


>gi|73988984|ref|XP_542558.2| PREDICTED: RCC1 and BTB domain-containing protein 1 isoform 1
           [Canis lupus familiaris]
          Length = 531

 Score = 89.0 bits (219), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 54/162 (33%), Positives = 88/162 (54%), Gaps = 5/162 (3%)

Query: 62  LPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNV 121
           L   V  V+ G +HS+A+  +G V+AWG NN  Q+G G+  ++ T   P++V     +  
Sbjct: 126 LIKQVVEVACGSHHSMALAADGEVFAWGYNNCGQVGSGSTTNQPT---PRKVTNCLHIKR 182

Query: 122 CAAFASGVVSS-AIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFG 180
               A G  SS A+ D+G ++ WG +  GQLGLG +  + + P RV AL    + ++  G
Sbjct: 183 VVGIACGQTSSMAVLDNGEVYGWGYNGNGQLGLGNNGNQ-LTPVRVAALHSVCVNQIVCG 241

Query: 181 WGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDR 222
           + H LA T++G L+ WG +  G++G   K    SP    +++
Sbjct: 242 YAHTLALTDEGLLYAWGANTYGQLGTGNKNNLLSPAHIMVEK 283



 Score = 74.3 bits (181), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 70/293 (23%), Positives = 116/293 (39%), Gaps = 67/293 (22%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLP-SDVTSVSAGH-YHSLAVTNNGAVW 86
           V  FG      LG     TG       P ++  L    + S+S G   H L  T +G V+
Sbjct: 43  VFVFGLNYSNCLG-----TGDNQSTLVPKKLEALCGKKIKSLSYGSGPHVLLSTEDGVVY 97

Query: 87  AWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVV---------SSAIGDD 137
           AWG N   QLG G              +G+  + VC       V         S A+  D
Sbjct: 98  AWGHNGYSQLGNGTTN-----------QGIAPIQVCTNLLIKQVVEVACGSHHSMALAAD 146

Query: 138 GSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWG 197
           G ++ WG +  GQ+G G    +         L  +++V ++ G   ++A  ++G+++GWG
Sbjct: 147 GEVFAWGYNNCGQVGSGSTTNQPTPRKVTNCLHIKRVVGIACGQTSSMAVLDNGEVYGWG 206

Query: 198 YSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWE 257
           Y+ +G++G      + +P+             +++                         
Sbjct: 207 YNGNGQLGLGNNGNQLTPV------------RVAA------------------------- 229

Query: 258 PFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDI 310
              +  V V  I CG+ H+L L   G+L + G+N YGQLG   ++  + P  I
Sbjct: 230 ---LHSVCVNQIVCGYAHTLALTDEGLLYAWGANTYGQLGTGNKNNLLSPAHI 279



 Score = 67.8 bits (164), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 76/293 (25%), Positives = 128/293 (43%), Gaps = 60/293 (20%)

Query: 76  SLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCA-AFASGVVSSAI 134
           +L VT+N  V+ +G N    LG G  +S      PK++E L    + + ++ SG      
Sbjct: 34  ALYVTDNDEVFVFGLNYSNCLGTGDNQSTLV---PKKLEALCGKKIKSLSYGSGPHVLLS 90

Query: 135 GDDGSLWVWGKSKRGQLGLGKDITEAIVPSRV-EALAGEKIVKVSFGWGHALAQTEDGKL 193
            +DG ++ WG +   QLG G    + I P +V   L  +++V+V+ G  H++A   DG++
Sbjct: 91  TEDGVVYAWGHNGYSQLGNGT-TNQGIAPIQVCTNLLIKQVVEVACGSHHSMALAADGEV 149

Query: 194 FGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMP 253
           F WGY+  G++G+                         S+T +   + V+  +  ++   
Sbjct: 150 FAWGYNNCGQVGS------------------------GSTTNQPTPRKVTNCLHIKR--- 182

Query: 254 IIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDI-NF 312
                       VV IACG   S+ +  NG +   G N  GQLG       + PV +   
Sbjct: 183 ------------VVGIACGQTSSMAVLDNGEVYGWGYNGNGQLGLGNNGNQLTPVRVAAL 230

Query: 313 HPVSIS---SGLGHSLAICEVRSSNVTGGARGIV-SWGWNRSSQLGRMGPDNV 361
           H V ++    G  H+LA+ +           G++ +WG N   QLG    +N+
Sbjct: 231 HSVCVNQIVCGYAHTLALTD----------EGLLYAWGANTYGQLGTGNKNNL 273


>gi|383861352|ref|XP_003706150.1| PREDICTED: uncharacterized protein LOC100881287 [Megachile rotundata]
          Length = 1884

 Score = 89.0 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 67/190 (35%), Positives = 100/190 (52%), Gaps = 15/190 (7%)

Query: 29   VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPG----LPSDVTSVSAGHYHSLAVTNNGA 84
            V ++G   QG LG     TG     Y P +       +  +V SVS GH H+LAVTNNG 
Sbjct: 839  VYTWGSSVQGCLG-----TGPSVLRYGPPQAISFFKIMEVEVLSVSCGHCHTLAVTNNG- 892

Query: 85   VWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWG 144
            V+AWG +   QLG G +   +T   P+ +  L Q  +  A A    S A+  DG ++ WG
Sbjct: 893  VYAWGSSRFGQLGLGKILQCST---PELITYLAQEVIIDAVAGQYHSVALTADGRVFTWG 949

Query: 145  KSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRI 204
                GQLG G +  + IVP+ + +L G  I  +S G  H LA + +G ++ +G +  G++
Sbjct: 950  WGVHGQLGHG-NTDKKIVPTLITSLLGTVIRYISAGHAHTLALSTEGIVYAFGCNIFGQL 1008

Query: 205  GNLGKALESS 214
            G +G  ++SS
Sbjct: 1009 G-VGSNVKSS 1017



 Score = 79.3 bits (194), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 69/273 (25%), Positives = 116/273 (42%), Gaps = 49/273 (17%)

Query: 71   AGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVE--GLDQVNVCAAFASG 128
            AG  H + +  NG V+ WG + +  LG G   S   +  P+ +    + +V V +     
Sbjct: 826  AGFSH-VVLIRNGNVYTWGSSVQGCLGTGP--SVLRYGPPQAISFFKIMEVEVLSVSCGH 882

Query: 129  VVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQT 188
              + A+ ++G ++ WG S+ GQLGLGK I +   P  +  LA E I+    G  H++A T
Sbjct: 883  CHTLAVTNNG-VYAWGSSRFGQLGLGK-ILQCSTPELITYLAQEVIIDAVAGQYHSVALT 940

Query: 189  EDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEK 248
             DG++F WG+   G++G+                                      G   
Sbjct: 941  ADGRVFTWGWGVHGQLGH--------------------------------------GNTD 962

Query: 249  EKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPV 308
            +K +P +    L  G  +  I+ G  H+L L   G++ + G N++GQLG         P+
Sbjct: 963  KKIVPTLITSLL--GTVIRYISAGHAHTLALSTEGIVYAFGCNIFGQLGVGSNVKSSVPI 1020

Query: 309  DINFHP--VSISSGLGHSLAICEVRSSNVTGGA 339
             +        I++G  H+LA+       V G +
Sbjct: 1021 KVLLPEKIFLITTGYFHNLAVSYTNKLYVWGAS 1053



 Score = 77.0 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 80/340 (23%), Positives = 145/340 (42%), Gaps = 57/340 (16%)

Query: 23   SASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVT-SVSAGHYHSLAVTN 81
            + +   V ++G    G LGL   L         P  +  L  +V     AG YHS+A+T 
Sbjct: 887  AVTNNGVYAWGSSRFGQLGLGKIL-----QCSTPELITYLAQEVIIDAVAGQYHSVALTA 941

Query: 82   NGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLW 141
            +G V+ WG     QLG G  + +     P  +  L    +    A    + A+  +G ++
Sbjct: 942  DGRVFTWGWGVHGQLGHGNTDKKIV---PTLITSLLGTVIRYISAGHAHTLALSTEGIVY 998

Query: 142  VWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSAD 201
             +G +  GQLG+G ++  + VP +V  L  EKI  ++ G+ H LA +   KL+ WG S  
Sbjct: 999  AFGCNIFGQLGVGSNVKSS-VPIKV--LLPEKIFLITTGYFHNLAVSYTNKLYVWGASPQ 1055

Query: 202  -----------GRI----GNLGKALES----------SPLDSNIDRSSESDQEISSSTIE 236
                        RI     N+ K  E+          +  +   +  SES+ +  ++ ++
Sbjct: 1056 VLRLQAQTQKRARILEQRDNIIKQFENIDEFEKVPDQACTNDTSEEVSESNAQNKNAQVK 1115

Query: 237  KAQKLVSEGMEKE-------------------KYMPIIWEPFLVEGVEVVDIACGFDHSL 277
            + +   S+  +K+                      P + +  LV G +++ I+ G  H+ 
Sbjct: 1116 QTESSYSDSRKKQLDNVCLKNVNVGSIEEAQTHLKPTVVDTSLVRG-DIIQISAGCHHNA 1174

Query: 278  VLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFHPVSI 317
            ++ ++G L + G N+ GQ+G   +     P  + ++P SI
Sbjct: 1175 LVTKDGSLYTWGRNLDGQIGNGSRREVPIPTPLCYNPASI 1214



 Score = 68.6 bits (166), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 77/326 (23%), Positives = 139/326 (42%), Gaps = 73/326 (22%)

Query: 29   VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAW 88
            V +FG    G LG+ +++      +  P +V  LP  +  ++ G++H+LAV+    ++ W
Sbjct: 997  VYAFGCNIFGQLGVGSNVK-----SSVPIKVL-LPEKIFLITTGYFHNLAVSYTNKLYVW 1050

Query: 89   GRNNEVQLGRGALESRATW-----NDPKRVEGLDQV-----NVCAAFASGVVSSAIGDDG 138
            G + +V   +   + RA       N  K+ E +D+        C    S  VS +   + 
Sbjct: 1051 GASPQVLRLQAQTQKRARILEQRDNIIKQFENIDEFEKVPDQACTNDTSEEVSESNAQNK 1110

Query: 139  SLWV------WGKSKRGQL----------GLGKDITEAIVPSRVE-ALAGEKIVKVSFGW 181
            +  V      +  S++ QL          G  ++    + P+ V+ +L    I+++S G 
Sbjct: 1111 NAQVKQTESSYSDSRKKQLDNVCLKNVNVGSIEEAQTHLKPTVVDTSLVRGDIIQISAGC 1170

Query: 182  GHALAQTEDGKLFGWGYSADGRIGNLGKAL----------------------------ES 213
             H    T+DG L+ WG + DG+IGN  +                              E 
Sbjct: 1171 HHNALVTKDGSLYTWGRNLDGQIGNGSRREVPIPTPLCYNPASIFAQVPPRHNSHRRDEE 1230

Query: 214  SPLDSNIDRSSESDQEISSSTIEKAQKLVSEGME-KEKYMPIIWEPFLVEGVEVVDIACG 272
              LD  +  S  S++  + +  ++A+   +E  E +EK  PII         + V I CG
Sbjct: 1231 QELDGGMKNSGNSEKNGNGN--DEAKSSPAESSESREKINPII---------KTVGIYCG 1279

Query: 273  FDHSLVLGRNGVLLSCGSNVYGQLGR 298
            +D+++ +   G +L+ G+N   QLGR
Sbjct: 1280 YDYTVAVQPGGTVLAWGNNSRAQLGR 1305



 Score = 45.4 bits (106), Expect = 0.039,   Method: Composition-based stats.
 Identities = 37/118 (31%), Positives = 55/118 (46%), Gaps = 16/118 (13%)

Query: 259 FLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFHP---- 314
           F +  VEV+ ++CG  H+L +  NGV  + GS+ +GQLG  K      P  I +      
Sbjct: 868 FKIMEVEVLSVSCGHCHTLAVTNNGV-YAWGSSRFGQLGLGKILQCSTPELITYLAQEVI 926

Query: 315 VSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPDN--VPLVVEGLEG 370
           +   +G  HS+A+        T   R + +WGW    QLG    D   VP ++  L G
Sbjct: 927 IDAVAGQYHSVAL--------TADGR-VFTWGWGVHGQLGHGNTDKKIVPTLITSLLG 975


>gi|157821577|ref|NP_001101850.1| RCC1 and BTB domain-containing protein 1 [Rattus norvegicus]
 gi|149064107|gb|EDM14377.1| regulator of chromosome condensation (RCC1) and BTB (POZ) domain
           containing protein 1 [Rattus norvegicus]
          Length = 531

 Score = 89.0 bits (219), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 58/180 (32%), Positives = 92/180 (51%), Gaps = 5/180 (2%)

Query: 62  LPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNV 121
           L   V  V+ G +HS+A+  +G ++AWG NN  Q+G G+  ++ T   P++V        
Sbjct: 126 LVKQVVEVACGSHHSMALAADGELFAWGYNNCGQVGSGSTANQPT---PRKVTNCLHTKK 182

Query: 122 CAAFASGVVSS-AIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFG 180
               A G  SS A+ D G ++ WG +  GQLGLG +  + + P RV AL G  + ++  G
Sbjct: 183 VVNIACGQTSSMAVLDSGEVYGWGYNGNGQLGLGNNGNQ-LTPVRVAALHGVCVNQIVCG 241

Query: 181 WGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQK 240
           + H LA T++G L+ WG +  G++G   K    SP    +++    +     ST   A K
Sbjct: 242 YAHTLALTDEGLLYAWGANTYGQLGTGSKNNLLSPTQIMVEKERVIEIAACHSTHTSAAK 301



 Score = 79.3 bits (194), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 61/245 (24%), Positives = 100/245 (40%), Gaps = 60/245 (24%)

Query: 75  HSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVV---- 130
           H L  T +G V+AWG N   QLG G              +G+  + VC       V    
Sbjct: 86  HVLLSTEDGVVYAWGHNGYSQLGNGTTN-----------QGIAPIQVCTNLLVKQVVEVA 134

Query: 131 -----SSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHAL 185
                S A+  DG L+ WG +  GQ+G G    +         L  +K+V ++ G   ++
Sbjct: 135 CGSHHSMALAADGELFAWGYNNCGQVGSGSTANQPTPRKVTNCLHTKKVVNIACGQTSSM 194

Query: 186 AQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEG 245
           A  + G+++GWGY+ +G++G      + +P+             +++             
Sbjct: 195 AVLDSGEVYGWGYNGNGQLGLGNNGNQLTPV------------RVAA------------- 229

Query: 246 MEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGM 305
                          + GV V  I CG+ H+L L   G+L + G+N YGQLG   ++  +
Sbjct: 230 ---------------LHGVCVNQIVCGYAHTLALTDEGLLYAWGANTYGQLGTGSKNNLL 274

Query: 306 FPVDI 310
            P  I
Sbjct: 275 SPTQI 279



 Score = 65.9 bits (159), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 68/246 (27%), Positives = 105/246 (42%), Gaps = 59/246 (23%)

Query: 134 IGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWG-HALAQTEDGK 192
           + D   ++V+G +    LG G D    +VP ++EAL G++I  +S+G G H L  TEDG 
Sbjct: 37  VTDSDEVFVFGLNYSNCLGTG-DNQSTLVPKKLEALCGKRIKSLSYGSGPHVLLSTEDGV 95

Query: 193 LFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYM 252
           ++ WG++   ++GN                                      G   +   
Sbjct: 96  VYAWGHNGYSQLGN--------------------------------------GTTNQGIA 117

Query: 253 PI-IWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDIN 311
           PI +    LV+  +VV++ACG  HS+ L  +G L + G N  GQ+G         P  + 
Sbjct: 118 PIQVCTNLLVK--QVVEVACGSHHSMALAADGELFAWGYNNCGQVGSGSTANQPTPRKVT 175

Query: 312 --FHP---VSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQ--LGRMGPDNVPLV 364
              H    V+I+ G   S+A+  + S  V G       WG+N + Q  LG  G    P+ 
Sbjct: 176 NCLHTKKVVNIACGQTSSMAV--LDSGEVYG-------WGYNGNGQLGLGNNGNQLTPVR 226

Query: 365 VEGLEG 370
           V  L G
Sbjct: 227 VAALHG 232


>gi|395501382|ref|XP_003755074.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC4 isoform 1
           [Sarcophilus harrisii]
          Length = 1057

 Score = 89.0 bits (219), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 77/316 (24%), Positives = 130/316 (41%), Gaps = 49/316 (15%)

Query: 55  EPTRVPGLPS-DVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRV 113
           +P +V  L + ++ +VS G  H+LA+ + G V+AWG + + QLG    E       P+ +
Sbjct: 74  KPEQVVALDAQNIVAVSCGEAHTLALNDKGQVYAWGLDTDGQLGLPGTEEYIRV--PRNI 131

Query: 114 EGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEK 173
           + L  + +         S A+     ++ WG++K GQLGLG ++     P  +++L G  
Sbjct: 132 KSLTDIQIVQIACGYYHSLALSKGSEVFSWGQNKHGQLGLGFELKRQSSPQLIKSLLGIP 191

Query: 174 IVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSS 233
             +V+ G  H+   T  G +FGWG +   + G LG   E+     N+ +S  S +     
Sbjct: 192 FTQVAAGGAHSFVLTLSGAIFGWGRN---KFGQLGLNDENDRFVPNLLKSLRSQK----- 243

Query: 234 TIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVY 293
                                           +V I CG DH+  L + G + + G+  Y
Sbjct: 244 --------------------------------IVYICCGEDHTAALTKEGGVFTFGAGGY 271

Query: 294 GQLGREKQDMGMFPVDINFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQL 353
           GQLG       + P  +      +   +   +A     +S     +  I S+G   + QL
Sbjct: 272 GQLGHNSTSHEINPRKV----FELMGSIVTQIACGRQHTSAFVPSSGRIYSFGLGGNGQL 327

Query: 354 GRMGPDN--VPLVVEG 367
           G     N   P  V+G
Sbjct: 328 GTGSTSNRKSPFTVKG 343



 Score = 69.3 bits (168), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 71/274 (25%), Positives = 112/274 (40%), Gaps = 55/274 (20%)

Query: 85  VWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWG 144
           +  WG  +  QLG G ++      +P++ +      V         +  + DDG+++  G
Sbjct: 1   MLCWGNASFGQLGLGGIDEEIVL-EPRKSDFFINKKVQDVGCGLRHTVFVLDDGTVYTCG 59

Query: 145 KSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRI 204
            +  GQLG  K   +   P +V AL  + IV VS G  H LA  + G+++ WG   DG++
Sbjct: 60  CNDLGQLGHEKSRKK---PEQVVALDAQNIVAVSCGEAHTLALNDKGQVYAWGLDTDGQL 116

Query: 205 GNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGV 264
           G  G                                        E+Y+ +      +  +
Sbjct: 117 GLPGT---------------------------------------EEYIRVPRNIKSLTDI 137

Query: 265 EVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFHPVSISSGLGHS 324
           ++V IACG+ HSL L +   + S G N +GQLG     +G F +     P  I S LG  
Sbjct: 138 QIVQIACGYYHSLALSKGSEVFSWGQNKHGQLG-----LG-FELKRQSSPQLIKSLLG-- 189

Query: 325 LAICEVRS----SNVTGGARGIVSWGWNRSSQLG 354
           +   +V +    S V   +  I  WG N+  QLG
Sbjct: 190 IPFTQVAAGGAHSFVLTLSGAIFGWGRNKFGQLG 223



 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 53/194 (27%), Positives = 87/194 (44%), Gaps = 8/194 (4%)

Query: 24  ASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNG 83
           + G+ V S+G    G LGL   L          + + G+P   T V+AG  HS  +T +G
Sbjct: 153 SKGSEVFSWGQNKHGQLGLGFELKRQSSPQLIKSLL-GIP--FTQVAAGGAHSFVLTLSG 209

Query: 84  AVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVW 143
           A++ WGRN   QLG      R   N  K +     V +C        ++A+  +G ++ +
Sbjct: 210 AIFGWGRNKFGQLGLNDENDRFVPNLLKSLRSQKIVYICCGEDH---TAALTKEGGVFTF 266

Query: 144 GKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQT-EDGKLFGWGYSADG 202
           G    GQLG     +  I P +V  L G  + +++ G  H  A     G+++ +G   +G
Sbjct: 267 GAGGYGQLG-HNSTSHEINPRKVFELMGSIVTQIACGRQHTSAFVPSSGRIYSFGLGGNG 325

Query: 203 RIGNLGKALESSPL 216
           ++G    +   SP 
Sbjct: 326 QLGTGSTSNRKSPF 339


>gi|118353390|ref|XP_001009963.1| regulator of chromosome condensation (RCC1) [Tetrahymena
           thermophila]
 gi|89291730|gb|EAR89718.1| regulator of chromosome condensation (RCC1) [Tetrahymena
           thermophila SB210]
          Length = 1166

 Score = 89.0 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 73/271 (26%), Positives = 112/271 (41%), Gaps = 47/271 (17%)

Query: 27  TAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVW 86
           T V  +G  + G LGL +   G    +    R       +  ++ G  H+  +  NG V+
Sbjct: 34  TPVYVWGSDTYGQLGLASREFG---KSCPSPRFTSFSVVIEDIACGEEHTSFIAQNGYVY 90

Query: 87  AWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKS 146
           + G NN+ QLG    ES    + P  VEGL              ++ + D+G L+ WG++
Sbjct: 91  SMGNNNQGQLGVSVDESYYK-SAPTLVEGLKGYKAVQISCGAYHTATVCDNGQLFTWGQN 149

Query: 147 KRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGN 206
             GQLG+GK  ++ +   ++  L     V VS G  + +  T+  K+FG+G   DG+ G 
Sbjct: 150 CEGQLGIGK--SDNMTTPQIVDLKNNLAVFVSCGKRNTMVITQTQKIFGFG---DGKCGQ 204

Query: 207 LGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEV 266
           LG                                    G E  +Y P       ++   +
Sbjct: 205 LGL-----------------------------------GNECNEYKP---RQLQIQMQNI 226

Query: 267 VDIACGFDHSLVLGRNGVLLSCGSNVYGQLG 297
           V I+CG  H+L L   G   SCG+N Y QLG
Sbjct: 227 VAISCGDRHTLFLNEEGEAFSCGNNTYNQLG 257



 Score = 77.0 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 81/292 (27%), Positives = 126/292 (43%), Gaps = 37/292 (12%)

Query: 24  ASGTAVVSFGDGSQGALGLPTSLTGVGGDAY---EPTRVPGLPS-DVTSVSAGHYHSLAV 79
           A    V S G+ +QG LG+         ++Y    PT V GL       +S G YH+  V
Sbjct: 84  AQNGYVYSMGNNNQGQLGVSVD------ESYYKSAPTLVEGLKGYKAVQISCGAYHTATV 137

Query: 80  TNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFAS--GVVSSAIGDD 137
            +NG ++ WG+N E QLG G  ++  T   P+ V   D  N  A F S     +  I   
Sbjct: 138 CDNGQLFTWGQNCEGQLGIGKSDNMTT---PQIV---DLKNNLAVFVSCGKRNTMVITQT 191

Query: 138 GSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWG 197
             ++ +G  K GQLGLG +  E     R   +  + IV +S G  H L   E+G+ F  G
Sbjct: 192 QKIFGFGDGKCGQLGLGNECNE--YKPRQLQIQMQNIVAISCGDRHTLFLNEEGEAFSCG 249

Query: 198 YSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIW- 256
            +   ++G       ++   SNI    +    +    +  A   +S  +  E Y+  +W 
Sbjct: 250 NNTYNQLG-----CANNSQSSNIPVKVKQKSTLKFVKVIAANTPMSAALSSEGYL-YLWG 303

Query: 257 --------EPFLVEGV--EVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGR 298
                    P   E    +++DI  G     +L   G + S GSN++G+LG+
Sbjct: 304 TGFFGQFDRPTRCEFAPKDLLDICIGNQFICLLDGEGKVYSWGSNMFGELGQ 355



 Score = 43.9 bits (102), Expect = 0.12,   Method: Composition-based stats.
 Identities = 52/218 (23%), Positives = 82/218 (37%), Gaps = 50/218 (22%)

Query: 140 LWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYS 199
           ++VWG    GQLGL         PS         I  ++ G  H     ++G ++  G +
Sbjct: 36  VYVWGSDTYGQLGLASREFGKSCPSPRFTSFSVVIEDIACGEEHTSFIAQNGYVYSMGNN 95

Query: 200 ADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPF 259
             G++G                        +  S  + A  LV EG++            
Sbjct: 96  NQGQLG----------------------VSVDESYYKSAPTLV-EGLK------------ 120

Query: 260 LVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFHPVSISS 319
              G + V I+CG  H+  +  NG L + G N  GQLG  K D    P  ++        
Sbjct: 121 ---GYKAVQISCGAYHTATVCDNGQLFTWGQNCEGQLGIGKSDNMTTPQIVD-------- 169

Query: 320 GLGHSLAI---CEVRSSNVTGGARGIVSWGWNRSSQLG 354
            L ++LA+   C  R++ V    + I  +G  +  QLG
Sbjct: 170 -LKNNLAVFVSCGKRNTMVITQTQKIFGFGDGKCGQLG 206


>gi|431913810|gb|ELK15239.1| RCC1 and BTB domain-containing protein 1 [Pteropus alecto]
          Length = 531

 Score = 89.0 bits (219), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 53/162 (32%), Positives = 89/162 (54%), Gaps = 5/162 (3%)

Query: 62  LPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNV 121
           L   V  V+ G +HS+A+  +G V+AWG NN  Q+G G+  ++ T   P++V     +  
Sbjct: 126 LIKQVVEVACGSHHSMALAADGEVFAWGYNNCGQVGSGSTANQPT---PRKVTNCLHIKK 182

Query: 122 CAAFASGVVSS-AIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFG 180
               A G  SS A+ D+G ++ WG +  GQLGLG +  + + P RV AL    + ++  G
Sbjct: 183 VVGIACGQTSSMAVLDNGEVYGWGYNGNGQLGLGNNGNQ-LTPVRVAALHSVCVNQIVCG 241

Query: 181 WGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDR 222
           + H LA T++G L+ WG +  G++G   K    +P+   +++
Sbjct: 242 YAHTLALTDEGLLYAWGANTYGQLGTGNKNNLLNPVHIMVEK 283



 Score = 77.0 bits (188), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 72/293 (24%), Positives = 117/293 (39%), Gaps = 67/293 (22%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLP-SDVTSVSAGH-YHSLAVTNNGAVW 86
           V  FG      LG     TG       P ++  L    + S+S G   H L  T +G V+
Sbjct: 43  VFVFGMNYSNCLG-----TGDSQSTLVPKKLEALCGKKIKSLSYGSGPHVLLSTEDGVVY 97

Query: 87  AWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVV---------SSAIGDD 137
           AWG N   QLG G              +G+  + VC       V         S A+  D
Sbjct: 98  AWGHNGYSQLGNGTTN-----------QGIAPIQVCTNLLIKQVVEVACGSHHSMALAAD 146

Query: 138 GSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWG 197
           G ++ WG +  GQ+G G    +         L  +K+V ++ G   ++A  ++G+++GWG
Sbjct: 147 GEVFAWGYNNCGQVGSGSTANQPTPRKVTNCLHIKKVVGIACGQTSSMAVLDNGEVYGWG 206

Query: 198 YSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWE 257
           Y+ +G++G      + +P+             +++                         
Sbjct: 207 YNGNGQLGLGNNGNQLTPV------------RVAA------------------------- 229

Query: 258 PFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDI 310
              +  V V  I CG+ H+L L   G+L + G+N YGQLG   ++  + PV I
Sbjct: 230 ---LHSVCVNQIVCGYAHTLALTDEGLLYAWGANTYGQLGTGNKNNLLNPVHI 279



 Score = 69.7 bits (169), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 77/293 (26%), Positives = 128/293 (43%), Gaps = 60/293 (20%)

Query: 76  SLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCA-AFASGVVSSAI 134
           +L VT+N  V+ +G N    LG G  +S      PK++E L    + + ++ SG      
Sbjct: 34  ALYVTDNDEVFVFGMNYSNCLGTGDSQSTLV---PKKLEALCGKKIKSLSYGSGPHVLLS 90

Query: 135 GDDGSLWVWGKSKRGQLGLGKDITEAIVPSRV-EALAGEKIVKVSFGWGHALAQTEDGKL 193
            +DG ++ WG +   QLG G    + I P +V   L  +++V+V+ G  H++A   DG++
Sbjct: 91  TEDGVVYAWGHNGYSQLGNGT-TNQGIAPIQVCTNLLIKQVVEVACGSHHSMALAADGEV 149

Query: 194 FGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMP 253
           F WGY+  G++G+   A + +P                        + V+  +  +K   
Sbjct: 150 FAWGYNNCGQVGSGSTANQPTP------------------------RKVTNCLHIKK--- 182

Query: 254 IIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDI-NF 312
                       VV IACG   S+ +  NG +   G N  GQLG       + PV +   
Sbjct: 183 ------------VVGIACGQTSSMAVLDNGEVYGWGYNGNGQLGLGNNGNQLTPVRVAAL 230

Query: 313 HPVSIS---SGLGHSLAICEVRSSNVTGGARGIV-SWGWNRSSQLGRMGPDNV 361
           H V ++    G  H+LA+ +           G++ +WG N   QLG    +N+
Sbjct: 231 HSVCVNQIVCGYAHTLALTD----------EGLLYAWGANTYGQLGTGNKNNL 273


>gi|313236983|emb|CBY12230.1| unnamed protein product [Oikopleura dioica]
          Length = 1048

 Score = 89.0 bits (219), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 70/257 (27%), Positives = 114/257 (44%), Gaps = 53/257 (20%)

Query: 66  VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQV---NVC 122
           V  V+ G  H +A+T  G + +WG N + QLG G+  S   + +P  +  L+      +C
Sbjct: 134 VVQVACGAQHCIALTEEGTILSWGSNTQGQLGLGS--SEIEFLEPTIIASLNAFPISQIC 191

Query: 123 A-AFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGW 181
           A A+ SGV+S +    G+L+ WGK+  GQLG G   +    P  V+ L  +++V V+ G 
Sbjct: 192 AGAYHSGVLSPS----GTLFTWGKNNWGQLGHGNSDSFQSSPRLVKTLRHQEVVFVAMGE 247

Query: 182 GHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKL 241
            H++ +T +G +F WG+  +G++G+   A  + P                          
Sbjct: 248 EHSVCRTRNGGVFSWGHGGNGQLGHNSMANVTQP-------------------------- 281

Query: 242 VSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQ 301
                  +K M ++       G  V  I CG  H++ L     LL  G N   QLG    
Sbjct: 282 -------KKIMELM-------GTTVCQICCGRRHTISLTDKRKLLGFGLNSNNQLGTHND 327

Query: 302 DMGMFPVDINFHPVSIS 318
                P+ I   P+S++
Sbjct: 328 TSARLPITI---PISLT 341



 Score = 72.0 bits (175), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 76/302 (25%), Positives = 120/302 (39%), Gaps = 62/302 (20%)

Query: 66  VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAF 125
           V S+++G  H++ +T+   V++ G N   QLG+   + R     P  V G     +    
Sbjct: 33  VISIASGLRHTVYLTSTRKVYSCGSNEFGQLGQQKSQCR-----PSLVTGFGAEEIFHVA 87

Query: 126 ASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHAL 185
           A    S AI + G L+ WG+S  G+L   +D      P  ++ +    +V+V+ G  H +
Sbjct: 88  AGDFFSIAIAESGLLFGWGRSLNGELMCKQDSLHE--PKLLDKIMHWSVVQVACGAQHCI 145

Query: 186 AQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEG 245
           A TE+G +  WG +  G++G                        + SS IE         
Sbjct: 146 ALTEEGTILSWGSNTQGQLG------------------------LGSSEIE--------- 172

Query: 246 MEKEKYMPIIWEPFLVEGVE---VVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQD 302
                      EP ++  +    +  I  G  HS VL  +G L + G N +GQLG    D
Sbjct: 173 ---------FLEPTIIASLNAFPISQICAGAYHSGVLSPSGTLFTWGKNNWGQLGHGNSD 223

Query: 303 -MGMFP--VDINFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPD 359
                P  V    H   +   +G   ++C  R+        G+ SWG   + QLG     
Sbjct: 224 SFQSSPRLVKTLRHQEVVFVAMGEEHSVCRTRNG-------GVFSWGHGGNGQLGHNSMA 276

Query: 360 NV 361
           NV
Sbjct: 277 NV 278



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 75/299 (25%), Positives = 114/299 (38%), Gaps = 73/299 (24%)

Query: 85  VWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSA-IGDDGSLWVW 143
           ++ WG+N+  QLG G+     +   P     +D      + ASG+  +  +     ++  
Sbjct: 1   MYGWGKNDYGQLGLGSENMLISCPSP-----IDANQSVISIASGLRHTVYLTSTRKVYSC 55

Query: 144 GKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGR 203
           G ++ GQLG  K       PS V     E+I  V+ G   ++A  E G LFGWG S +G 
Sbjct: 56  GSNEFGQLGQQKSQCR---PSLVTGFGAEEIFHVAAGDFFSIAIAESGLLFGWGRSLNGE 112

Query: 204 IGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEG 263
           +     +L                                             EP L++ 
Sbjct: 113 LMCKQDSLH--------------------------------------------EPKLLDK 128

Query: 264 V---EVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDI----NFHPVS 316
           +    VV +ACG  H + L   G +LS GSN  GQLG    ++      I    N  P+S
Sbjct: 129 IMHWSVVQVACGAQHCIALTEEGTILSWGSNTQGQLGLGSSEIEFLEPTIIASLNAFPIS 188

Query: 317 -ISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPDNV---PLVVEGLEGE 371
            I +G  H         S V   +  + +WG N   QLG    D+    P +V+ L  +
Sbjct: 189 QICAGAYH---------SGVLSPSGTLFTWGKNNWGQLGHGNSDSFQSSPRLVKTLRHQ 238



 Score = 42.7 bits (99), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 43/144 (29%), Positives = 65/144 (45%), Gaps = 14/144 (9%)

Query: 23  SASGTAVVSFGDGSQGALGLPTSLTGVGGDAYE--PTRVPGL-PSDVTSVSAGHYHSLAV 79
           S SGT + ++G  + G LG   S      D+++  P  V  L   +V  V+ G  HS+  
Sbjct: 201 SPSGT-LFTWGKNNWGQLGHGNS------DSFQSSPRLVKTLRHQEVVFVAMGEEHSVCR 253

Query: 80  TNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGS 139
           T NG V++WG     QLG  ++   A    PK++  L    VC        + ++ D   
Sbjct: 254 TRNGGVFSWGHGGNGQLGHNSM---ANVTQPKKIMELMGTTVCQICCGRRHTISLTDKRK 310

Query: 140 LWVWGKSKRGQLGLGKDITEAIVP 163
           L  +G +   QLG   D T A +P
Sbjct: 311 LLGFGLNSNNQLGTHND-TSARLP 333


>gi|313221348|emb|CBY32102.1| unnamed protein product [Oikopleura dioica]
          Length = 1199

 Score = 89.0 bits (219), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 70/257 (27%), Positives = 114/257 (44%), Gaps = 53/257 (20%)

Query: 66  VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQV---NVC 122
           V  V+ G  H +A+T  G + +WG N + QLG G+  S   + +P  +  L+      +C
Sbjct: 134 VVQVACGAQHCIALTEEGTILSWGSNTQGQLGLGS--SEIEFLEPTIIASLNAFPISQIC 191

Query: 123 A-AFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGW 181
           A A+ SGV+S +    G+L+ WGK+  GQLG G   +    P  V+ L  +++V V+ G 
Sbjct: 192 AGAYHSGVLSPS----GTLFTWGKNNWGQLGHGNSDSFQSSPRLVKTLRHQEVVFVAMGE 247

Query: 182 GHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKL 241
            H++ +T +G +F WG+  +G++G+   A  + P                          
Sbjct: 248 EHSVCRTRNGGVFSWGHGGNGQLGHNSMANVTQP-------------------------- 281

Query: 242 VSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQ 301
                  +K M ++       G  V  I CG  H++ L     LL  G N   QLG    
Sbjct: 282 -------KKIMELM-------GTTVCQICCGRRHTISLTDKRKLLGFGLNSNNQLGTHND 327

Query: 302 DMGMFPVDINFHPVSIS 318
                P+ I   P+S++
Sbjct: 328 TSARLPITI---PISLT 341



 Score = 71.2 bits (173), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 76/302 (25%), Positives = 120/302 (39%), Gaps = 62/302 (20%)

Query: 66  VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAF 125
           V S+++G  H++ +T+   V++ G N   QLG+   + R     P  V G     +    
Sbjct: 33  VISIASGLRHTVYLTSTRKVYSCGSNEFGQLGQQKSQCR-----PSLVTGFGAEEIFHVA 87

Query: 126 ASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHAL 185
           A    S AI + G L+ WG+S  G+L   +D      P  ++ +    +V+V+ G  H +
Sbjct: 88  AGDFFSIAIAESGLLFGWGRSLNGELMCKQDSLHE--PKLLDKIMHWSVVQVACGAQHCI 145

Query: 186 AQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEG 245
           A TE+G +  WG +  G++G                        + SS IE         
Sbjct: 146 ALTEEGTILSWGSNTQGQLG------------------------LGSSEIE--------- 172

Query: 246 MEKEKYMPIIWEPFLVEGVE---VVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQD 302
                      EP ++  +    +  I  G  HS VL  +G L + G N +GQLG    D
Sbjct: 173 ---------FLEPTIIASLNAFPISQICAGAYHSGVLSPSGTLFTWGKNNWGQLGHGNSD 223

Query: 303 -MGMFP--VDINFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPD 359
                P  V    H   +   +G   ++C  R+        G+ SWG   + QLG     
Sbjct: 224 SFQSSPRLVKTLRHQEVVFVAMGEEHSVCRTRNG-------GVFSWGHGGNGQLGHNSMA 276

Query: 360 NV 361
           NV
Sbjct: 277 NV 278



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 77/299 (25%), Positives = 116/299 (38%), Gaps = 73/299 (24%)

Query: 85  VWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSA-IGDDGSLWVW 143
           ++ WG+N+  QLG G+     +   P     +D      + ASG+  +  +     ++  
Sbjct: 1   MYGWGKNDYGQLGLGSENMLISCPSP-----IDANQSVISIASGLRHTVYLTSTRKVYSC 55

Query: 144 GKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGR 203
           G ++ GQLG  K       PS V     E+I  V+ G   ++A  E G LFGWG S +G 
Sbjct: 56  GSNEFGQLGQQKSQCR---PSLVTGFGAEEIFHVAAGDFFSIAIAESGLLFGWGRSLNG- 111

Query: 204 IGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEG 263
                                                   E M K+  +    EP L++ 
Sbjct: 112 ----------------------------------------ELMCKQDSL---HEPKLLDK 128

Query: 264 V---EVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDI----NFHPVS 316
           +    VV +ACG  H + L   G +LS GSN  GQLG    ++      I    N  P+S
Sbjct: 129 IMHWSVVQVACGAQHCIALTEEGTILSWGSNTQGQLGLGSSEIEFLEPTIIASLNAFPIS 188

Query: 317 -ISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPDNV---PLVVEGLEGE 371
            I +G  H         S V   +  + +WG N   QLG    D+    P +V+ L  +
Sbjct: 189 QICAGAYH---------SGVLSPSGTLFTWGKNNWGQLGHGNSDSFQSSPRLVKTLRHQ 238



 Score = 42.7 bits (99), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 30/99 (30%), Positives = 45/99 (45%), Gaps = 4/99 (4%)

Query: 65  DVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAA 124
           +V  V+ G  HS+  T NG V++WG     QLG  ++   A    PK++  L    VC  
Sbjct: 239 EVVFVAMGEEHSVCRTRNGGVFSWGHGGNGQLGHNSM---ANVTQPKKIMELMGTTVCQI 295

Query: 125 FASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVP 163
                 + ++ D   L  +G +   QLG   D T A +P
Sbjct: 296 CCGRRHTISLTDKRKLLGFGLNSNNQLGTHND-TSARLP 333


>gi|241651044|ref|XP_002411264.1| RCC1 and BTB domain-containing protein, putative [Ixodes
           scapularis]
 gi|215503894|gb|EEC13388.1| RCC1 and BTB domain-containing protein, putative [Ixodes
           scapularis]
          Length = 533

 Score = 89.0 bits (219), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 57/159 (35%), Positives = 89/159 (55%), Gaps = 8/159 (5%)

Query: 59  VPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQ 118
           V  +   V  V+ G +HSLA+T  G V+AWG+NN  Q+G G+  ++ T   P++V     
Sbjct: 121 VVTMHHQVAHVACGSHHSLALTCAGEVYAWGQNNCGQVGSGSTTNQPT---PRKVTSGIG 177

Query: 119 VNVCAAFASGVVSS-AIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKV 177
              C   A G  SS A+ ++G ++ WG +  GQLGLG ++ +   P RV  L G   V V
Sbjct: 178 GRRCIGIACGQTSSMAVMENGEVFGWGYNGNGQLGLGNNVNQT-SPCRVTNLQG---VVV 233

Query: 178 SFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPL 216
             G+ H +A +++G L+ WG ++ G++G   KA + SP 
Sbjct: 234 VCGYAHTMALSDEGVLYTWGANSYGQLGTGNKANQVSPF 272



 Score = 79.3 bits (194), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 71/282 (25%), Positives = 115/282 (40%), Gaps = 75/282 (26%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAY---EPTRVPGLPSD-VTSVSAGH-YHSLAVTNNG 83
           V + G  S G LGL        GD +   EP +V  L    +  ++ G   H LAVT +G
Sbjct: 42  VYALGSNSSGCLGL--------GDTHGSLEPRKVDALCRKGIQGLAYGSGPHVLAVTQSG 93

Query: 84  AVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSL--- 140
            + +WG N   QLG                +GL   ++       V   A G   SL   
Sbjct: 94  DLLSWGHNGYCQLGNNC-----------NTQGLVPSSIVVTMHHQVAHVACGSHHSLALT 142

Query: 141 -----WVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFG 195
                + WG++  GQ+G G    +         + G + + ++ G   ++A  E+G++FG
Sbjct: 143 CAGEVYAWGQNNCGQVGSGSTTNQPTPRKVTSGIGGRRCIGIACGQTSSMAVMENGEVFG 202

Query: 196 WGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPII 255
           WGY+ +G++G          L +N++++S                               
Sbjct: 203 WGYNGNGQLG----------LGNNVNQTS------------------------------- 221

Query: 256 WEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLG 297
             P  V  ++ V + CG+ H++ L   GVL + G+N YGQLG
Sbjct: 222 --PCRVTNLQGVVVVCGYAHTMALSDEGVLYTWGANSYGQLG 261


>gi|444731984|gb|ELW72311.1| RCC1 and BTB domain-containing protein 1 [Tupaia chinensis]
          Length = 531

 Score = 89.0 bits (219), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 54/162 (33%), Positives = 88/162 (54%), Gaps = 5/162 (3%)

Query: 62  LPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNV 121
           L   V  V+ G +HS+A+  +G V+AWG NN  Q+G G+  ++ T   P++V     +  
Sbjct: 126 LIKQVVEVACGSHHSMALAADGEVFAWGYNNCGQVGSGSTANQPT---PRKVTNCLHIKR 182

Query: 122 CAAFASGVVSS-AIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFG 180
               A G  SS A+ D+G ++ WG +  GQLGLG +  + + P RV AL    + ++  G
Sbjct: 183 VVGIACGQTSSMAVLDNGEVYGWGYNGNGQLGLGNNGNQ-LTPVRVAALHSVCVNQIVCG 241

Query: 181 WGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDR 222
           + H LA T++G L+ WG +  G++G   K    SP    +++
Sbjct: 242 YAHTLALTDEGLLYAWGANTYGQLGTGNKNNLLSPAHIMVEK 283



 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 70/293 (23%), Positives = 116/293 (39%), Gaps = 67/293 (22%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLP-SDVTSVSAGH-YHSLAVTNNGAVW 86
           V  FG      LG     TG       P ++  L    + S+S G   H L  T +G V+
Sbjct: 43  VFVFGLNYSNCLG-----TGDNQSTLVPKKLEALCGKKIKSLSYGSGPHVLLSTEDGVVY 97

Query: 87  AWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVV---------SSAIGDD 137
           AWG N   QLG G              +G+  + VC       V         S A+  D
Sbjct: 98  AWGHNGYSQLGNGTTN-----------QGIAPIQVCTNLLIKQVVEVACGSHHSMALAAD 146

Query: 138 GSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWG 197
           G ++ WG +  GQ+G G    +         L  +++V ++ G   ++A  ++G+++GWG
Sbjct: 147 GEVFAWGYNNCGQVGSGSTANQPTPRKVTNCLHIKRVVGIACGQTSSMAVLDNGEVYGWG 206

Query: 198 YSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWE 257
           Y+ +G++G      + +P+             +++                         
Sbjct: 207 YNGNGQLGLGNNGNQLTPV------------RVAA------------------------- 229

Query: 258 PFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDI 310
              +  V V  I CG+ H+L L   G+L + G+N YGQLG   ++  + P  I
Sbjct: 230 ---LHSVCVNQIVCGYAHTLALTDEGLLYAWGANTYGQLGTGNKNNLLSPAHI 279



 Score = 65.9 bits (159), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 75/293 (25%), Positives = 128/293 (43%), Gaps = 60/293 (20%)

Query: 76  SLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCA-AFASGVVSSAI 134
           +L VT++  V+ +G N    LG G  +S      PK++E L    + + ++ SG      
Sbjct: 34  ALYVTDSDEVFVFGLNYSNCLGTGDNQSTLV---PKKLEALCGKKIKSLSYGSGPHVLLS 90

Query: 135 GDDGSLWVWGKSKRGQLGLGKDITEAIVPSRV-EALAGEKIVKVSFGWGHALAQTEDGKL 193
            +DG ++ WG +   QLG G    + I P +V   L  +++V+V+ G  H++A   DG++
Sbjct: 91  TEDGVVYAWGHNGYSQLGNGT-TNQGIAPIQVCTNLLIKQVVEVACGSHHSMALAADGEV 149

Query: 194 FGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMP 253
           F WGY+  G++G+   A + +P                        + V+  +  ++   
Sbjct: 150 FAWGYNNCGQVGSGSTANQPTP------------------------RKVTNCLHIKR--- 182

Query: 254 IIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDI-NF 312
                       VV IACG   S+ +  NG +   G N  GQLG       + PV +   
Sbjct: 183 ------------VVGIACGQTSSMAVLDNGEVYGWGYNGNGQLGLGNNGNQLTPVRVAAL 230

Query: 313 HPVSIS---SGLGHSLAICEVRSSNVTGGARGIV-SWGWNRSSQLGRMGPDNV 361
           H V ++    G  H+LA+ +           G++ +WG N   QLG    +N+
Sbjct: 231 HSVCVNQIVCGYAHTLALTD----------EGLLYAWGANTYGQLGTGNKNNL 273


>gi|297810989|ref|XP_002873378.1| hypothetical protein ARALYDRAFT_487713 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297319215|gb|EFH49637.1| hypothetical protein ARALYDRAFT_487713 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 434

 Score = 89.0 bits (219), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 106/365 (29%), Positives = 159/365 (43%), Gaps = 55/365 (15%)

Query: 15  LTSRIFMRSASGTAVVSF-GDGSQGALGLPTSLTGVGGDAYEPTRVPGLPS-DVTSVSAG 72
           ++ R ++ + SG    +  G G  G LGL     G     + P     L    + +V+ G
Sbjct: 36  VSCRRWLSNESGKRFAAMWGSGDYGRLGL-----GNLDSQWTPAGCSALSDHSIRAVACG 90

Query: 73  HYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSS 132
             H+L +T    V+A G N+  QLG   ++S A   DP  V GLD+ ++    A    S+
Sbjct: 91  GAHTLFLTETRRVFATGLNDCGQLGVSDVKSHAM--DPLEVSGLDK-DILHISAGYYHSA 147

Query: 133 AIGDDGSLWVWGKSKRGQLGLGKDITEAI-VPSRVEALAGEKIVKVSFGWGHALAQTEDG 191
           AI  DG L++WGK+  GQLGLGK     + VP++VEAL G  I  V+ G  H++A T+ G
Sbjct: 148 AITVDGELYMWGKNSSGQLGLGKKAARVVRVPTKVEALHGITIQSVALGSEHSVAVTDGG 207

Query: 192 K-------------------LFGWGYSADGRIGNLGKALESSPLD---SNIDRSSESDQE 229
           +                   LFG   S       L K LE   +    + +  S+ +D+ 
Sbjct: 208 EVLSWGGGGSGRLGHGHQSSLFGILRSNSEFTPRLIKELEGIKVKNVAAGLLHSACTDEN 267

Query: 230 ISSSTI--EKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLS 287
            S+         K+   G+       II E    EGV     ACG  H+ V+ R G L +
Sbjct: 268 GSAFMFGERSINKMGFGGVRNATTPSIISEVPYAEGV-----ACGGYHTCVVTRGGELYT 322

Query: 288 CGSNVYGQLGREKQDMGMFPVDINFHPV-----SISSGLGHSLAICEVRSSNVTGGARGI 342
            GSN  G LG +   +   PV +    +      +S G  H+ AI + +          +
Sbjct: 323 WGSNENGCLGTDSTYVSHSPVRVEGPFLESTVSQVSCGWKHTAAISDNK----------V 372

Query: 343 VSWGW 347
            +WGW
Sbjct: 373 FTWGW 377



 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 56/212 (26%), Positives = 88/212 (41%), Gaps = 36/212 (16%)

Query: 66  VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAF 125
           V +V+AG  HS     NG+ + +G  +  ++G G + +  T +    V   + V  C  +
Sbjct: 251 VKNVAAGLLHSACTDENGSAFMFGERSINKMGFGGVRNATTPSIISEVPYAEGV-ACGGY 309

Query: 126 ASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIV-KVSFGWGHA 184
            + VV+      G L+ WG ++ G LG          P RVE    E  V +VS GW H 
Sbjct: 310 HTCVVTRG----GELYTWGSNENGCLGTDSTYVSH-SPVRVEGPFLESTVSQVSCGWKHT 364

Query: 185 LAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSE 244
            A   D K+F WG+   G  G             ++D  S   Q    S ++ A+  + +
Sbjct: 365 -AAISDNKVFTWGWG--GSHGTF-----------SVDGHSSGGQLGHGSDVDYARPAMVD 410

Query: 245 GMEKEKYMPIIWEPFLVEGVEVVDIACGFDHS 276
                          L + V  V I+CGF+H+
Sbjct: 411 ---------------LGKNVRAVHISCGFNHT 427



 Score = 48.5 bits (114), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 45/156 (28%), Positives = 67/156 (42%), Gaps = 19/156 (12%)

Query: 48  GVGG--DAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRA 105
           G GG  +A  P+ +  +P     V+ G YH+  VT  G ++ WG N    LG    +S  
Sbjct: 282 GFGGVRNATTPSIISEVPY-AEGVACGGYHTCVVTRGGELYTWGSNENGCLG---TDSTY 337

Query: 106 TWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWG------------KSKRGQLGL 153
             + P RVEG    +  +  + G   +A   D  ++ WG             S  GQLG 
Sbjct: 338 VSHSPVRVEGPFLESTVSQVSCGWKHTAAISDNKVFTWGWGGSHGTFSVDGHSSGGQLGH 397

Query: 154 GKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTE 189
           G D+  A  P+ V+     + V +S G+ H  A  E
Sbjct: 398 GSDVDYA-RPAMVDLGKNVRAVHISCGFNHTAAVLE 432


>gi|13699242|gb|AAK38372.1|AF334406_1 CLLL7 protein [Homo sapiens]
 gi|14275565|emb|CAC40027.1| guanine nucleotide exchange factor [Homo sapiens]
 gi|21756194|dbj|BAC04833.1| unnamed protein product [Homo sapiens]
 gi|119629234|gb|EAX08829.1| regulator of chromosome condensation (RCC1) and BTB (POZ) domain
           containing protein 1 [Homo sapiens]
          Length = 531

 Score = 89.0 bits (219), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 54/162 (33%), Positives = 88/162 (54%), Gaps = 5/162 (3%)

Query: 62  LPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNV 121
           L   V  V+ G +HS+A+  +G V+AWG NN  Q+G G+  ++ T   P++V     +  
Sbjct: 126 LIKQVVEVACGSHHSMALAADGEVFAWGYNNCGQVGSGSTANQPT---PRKVTNCLHIKR 182

Query: 122 CAAFASGVVSS-AIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFG 180
               A G  SS A+ D+G ++ WG +  GQLGLG +  + + P RV AL    + ++  G
Sbjct: 183 VVGIACGQTSSMAVLDNGEVYGWGYNGNGQLGLGNNGNQ-LTPVRVAALHSVCVNQIVCG 241

Query: 181 WGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDR 222
           + H LA T++G L+ WG +  G++G   K    SP    +++
Sbjct: 242 YAHTLALTDEGLLYAWGANTYGQLGTGNKNNLLSPAHIMVEK 283



 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 72/293 (24%), Positives = 117/293 (39%), Gaps = 67/293 (22%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLP-SDVTSVSAGH-YHSLAVTNNGAVW 86
           V  FG      LG     TG       P ++ GL    + S+S G   H L  T +G V+
Sbjct: 43  VFVFGLNYSNCLG-----TGDNQSTLVPKKLEGLCGKKIKSLSYGSGPHVLLSTEDGVVY 97

Query: 87  AWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVV---------SSAIGDD 137
           AWG N   QLG G              +G+  V VC       V         S A+  D
Sbjct: 98  AWGHNGYSQLGNGTTN-----------QGIAPVQVCTNLLIKQVVEVACGSHHSMALAAD 146

Query: 138 GSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWG 197
           G ++ WG +  GQ+G G    +         L  +++V ++ G   ++A  ++G+++GWG
Sbjct: 147 GEVFAWGYNNCGQVGSGSTANQPTPRKVTNCLHIKRVVGIACGQTSSMAVLDNGEVYGWG 206

Query: 198 YSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWE 257
           Y+ +G++G      + +P+             +++                         
Sbjct: 207 YNGNGQLGLGNNGNQLTPV------------RVAA------------------------- 229

Query: 258 PFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDI 310
              +  V V  I CG+ H+L L   G+L + G+N YGQLG   ++  + P  I
Sbjct: 230 ---LHSVCVNQIVCGYAHTLALTDEGLLYAWGANTYGQLGTGNKNNLLSPAHI 279



 Score = 61.2 bits (147), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 69/274 (25%), Positives = 119/274 (43%), Gaps = 37/274 (13%)

Query: 110 PKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEAL 169
           P+ +  + +V V    AS  +   + D+  ++V+G +    LG G D    +VP ++E L
Sbjct: 15  PQEIASIRKVCVFGTSASEALY--VTDNDEVFVFGLNYSNCLGTG-DNQSTLVPKKLEGL 71

Query: 170 AGEKIVKVSFGWG-HALAQTEDGKLFGWGYSADGRIGN----------------LGKALE 212
            G+KI  +S+G G H L  TEDG ++ WG++   ++GN                L K + 
Sbjct: 72  CGKKIKSLSYGSGPHVLLSTEDGVVYAWGHNGYSQLGNGTTNQGIAPVQVCTNLLIKQVV 131

Query: 213 SSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACG 272
                S+   +  +D E+ +       ++ S     +     +     ++   VV IACG
Sbjct: 132 EVACGSHHSMALAADGEVFAWGYNNCGQVGSGSTANQPTPRKVTNCLHIK--RVVGIACG 189

Query: 273 FDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDI-NFHPVSIS---SGLGHSLAIC 328
              S+ +  NG +   G N  GQLG       + PV +   H V ++    G  H+LA+ 
Sbjct: 190 QTSSMAVLDNGEVYGWGYNGNGQLGLGNNGNQLTPVRVAALHSVCVNQIVCGYAHTLALT 249

Query: 329 EVRSSNVTGGARGIV-SWGWNRSSQLGRMGPDNV 361
           +           G++ +WG N   QLG    +N+
Sbjct: 250 D----------EGLLYAWGANTYGQLGTGNKNNL 273


>gi|444912858|ref|ZP_21233017.1| BNR repeat domain protein [Cystobacter fuscus DSM 2262]
 gi|444716551|gb|ELW57397.1| BNR repeat domain protein [Cystobacter fuscus DSM 2262]
          Length = 394

 Score = 89.0 bits (219), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 78/256 (30%), Positives = 119/256 (46%), Gaps = 35/256 (13%)

Query: 56  PTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEG 115
           P  VPGL SDV +++AG  HSLA++ +G VW+WG +N               N P +VEG
Sbjct: 141 PVEVPGL-SDVVAIAAGFSHSLALSQSGQVWSWGNDNAGHAN----------NTPVQVEG 189

Query: 116 LDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIV 175
           L  +   AA  S   S A+G DGS+W WG +  GQLG   D   +  P +V  L    I 
Sbjct: 190 LPGIKAIAAGVS--YSLALGTDGSVWAWGDNTLGQLG--SDTPSSATPVKVAEL--PMIT 243

Query: 176 KVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLD-----SNIDR-------- 222
            ++ G  HALA    G ++ WG +  G++G+   + + S        +NI          
Sbjct: 244 FIAAGSTHALALDTAGGVWTWGANDHGQLGDGTTSTKRSQPQQVSGLANIQALAGGNGHS 303

Query: 223 -SSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGR 281
            +  S  ++ +   + A +L  +   K++  P+              I+ G  HSL +  
Sbjct: 304 LALNSANDVMAWGRDSAGQLGDDLSLKDQSRPVKTSSL----TNATAISAGHSHSLAVLS 359

Query: 282 NGVLLSCGSNVYGQLG 297
           +G L + GSN  G+LG
Sbjct: 360 DGSLFAWGSNENGRLG 375



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 81/295 (27%), Positives = 118/295 (40%), Gaps = 79/295 (26%)

Query: 63  PSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVC 122
           P+ +T VS+   HSLA  ++G+VWAWG N   QLG G    R+T   P ++  L  +   
Sbjct: 55  PAPITHVSSRGQHSLARRSDGSVWAWGENTTGQLGDGTTTLRST---PTKIATLSNMERV 111

Query: 123 AAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWG 182
           AA   G   S     G +W WGK   G          AI  + VE      +V ++ G+ 
Sbjct: 112 AA---GHGHSLALRAGKVWAWGKPDSG----------AIKTAPVEVPGLSDVVAIAAGFS 158

Query: 183 HALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLV 242
           H+LA ++ G+++ WG    G   N                                    
Sbjct: 159 HSLALSQSGQVWSWGNDNAGHANN------------------------------------ 182

Query: 243 SEGMEKEKYMPIIWEPFLVEGVE-VVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQ 301
                          P  VEG+  +  IA G  +SL LG +G + + G N  GQLG +  
Sbjct: 183 --------------TPVQVEGLPGIKAIAAGVSYSLALGTDGSVWAWGDNTLGQLGSDTP 228

Query: 302 DMGMFPVDINFHPV--SISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLG 354
                PV +   P+   I++G  H+LA+           A G+ +WG N   QLG
Sbjct: 229 SSAT-PVKVAELPMITFIAAGSTHALALDT---------AGGVWTWGANDHGQLG 273



 Score = 79.3 bits (194), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 59/180 (32%), Positives = 89/180 (49%), Gaps = 17/180 (9%)

Query: 28  AVVSFGDGSQGALG--LPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAV 85
           +V ++GD + G LG   P+S T        P +V  LP  +T ++AG  H+LA+   G V
Sbjct: 211 SVWAWGDNTLGQLGSDTPSSAT--------PVKVAELPM-ITFIAAGSTHALALDTAGGV 261

Query: 86  WAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGK 145
           W WG N+  QLG G   ++ +   P++V GL   N+ A       S A+     +  WG+
Sbjct: 262 WTWGANDHGQLGDGTTSTKRS--QPQQVSGL--ANIQALAGGNGHSLALNSANDVMAWGR 317

Query: 146 SKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIG 205
              GQLG    + +   P +  +L       +S G  H+LA   DG LF WG + +GR+G
Sbjct: 318 DSAGQLGDDLSLKDQSRPVKTSSL--TNATAISAGHSHSLAVLSDGSLFAWGSNENGRLG 375



 Score = 52.0 bits (123), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 58/193 (30%), Positives = 91/193 (47%), Gaps = 31/193 (16%)

Query: 174 IVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLD----SNIDRSSESDQE 229
           I  VS    H+LA+  DG ++ WG +  G++G+    L S+P      SN++R +     
Sbjct: 58  ITHVSSRGQHSLARRSDGSVWAWGENTTGQLGDGTTTLRSTPTKIATLSNMERVAAGHGH 117

Query: 230 ISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGV-EVVDIACGFDHSLVLGRNGVLLSC 288
              S   +A K+ + G  K     I   P  V G+ +VV IA GF HSL L ++G + S 
Sbjct: 118 ---SLALRAGKVWAWG--KPDSGAIKTAPVEVPGLSDVVAIAAGFSHSLALSQSGQVWSW 172

Query: 289 GSNVYGQLGREKQDMGMFPVDINFHP--VSISSGLGHSLAICEVRSSNVTGGARGIVSWG 346
           G++  G            PV +   P   +I++G+ +SLA+          G  G V W 
Sbjct: 173 GNDNAGHANNT-------PVQVEGLPGIKAIAAGVSYSLAL----------GTDGSV-WA 214

Query: 347 WNRSSQLGRMGPD 359
           W  ++ LG++G D
Sbjct: 215 WGDNT-LGQLGSD 226



 Score = 44.3 bits (103), Expect = 0.097,   Method: Compositional matrix adjust.
 Identities = 29/73 (39%), Positives = 43/73 (58%), Gaps = 5/73 (6%)

Query: 25  SGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGA 84
           S   V+++G  S G LG   SL     D   P +   L ++ T++SAGH HSLAV ++G+
Sbjct: 308 SANDVMAWGRDSAGQLGDDLSLK----DQSRPVKTSSL-TNATAISAGHSHSLAVLSDGS 362

Query: 85  VWAWGRNNEVQLG 97
           ++AWG N   +LG
Sbjct: 363 LFAWGSNENGRLG 375


>gi|295789059|ref|NP_001171423.1| X-linked retinitis pigmentosa GTPase regulator isoform 4 [Mus
           musculus]
 gi|74223915|dbj|BAE23845.1| unnamed protein product [Mus musculus]
          Length = 651

 Score = 89.0 bits (219), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 83/310 (26%), Positives = 149/310 (48%), Gaps = 29/310 (9%)

Query: 32  FGDGSQGALGLPTSLTGVGGDAYEPTRVPGL-PSDVTSVSAGHYHSLAVTNNGAVWAWGR 90
           FG  + G LGL     G      +PT +  L P  V   + G  H+L  T+ G V+A G 
Sbjct: 2   FGSNNWGQLGL-----GSKAAIIKPTCIKALKPEKVKLAACGRNHTLVSTDTGGVYAAGG 56

Query: 91  NNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQ 150
           NNE QLG G  + R T++        D +   +A A+   S+A+ +DG L++WG +  GQ
Sbjct: 57  NNEGQLGLGDTDDRDTFHQIVFFTPADTIKQLSAGAN--TSAALTEDGKLFMWGDNSEGQ 114

Query: 151 LGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKA 210
           +GL +D +   +P   E   G+ I  +S G+ H+   T DG+L+ +G   +G++G   + 
Sbjct: 115 IGL-EDKSNVCIPH--EVTVGKPISWISCGYYHSAFVTMDGELYTFGEPENGKLGLPNEL 171

Query: 211 LESSPLDSNIDRSSESDQEISS---STIEKAQKLV-SEGMEKE------KYMPIIWEPFL 260
           L +      +    E   +++     T+   +K+V + G+ +        ++    EP +
Sbjct: 172 LMNHRSPQRVLGIPERVIQVACGGGHTVVLTEKVVYAFGLGQFGQLGLGTFLFETSEPKI 231

Query: 261 VEGV---EVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFHPVSI 317
           +E +   ++  I+CG +H+ ++   G+L + G   +G+LG     +GM      F P   
Sbjct: 232 IERIKDQKICHISCGENHTALMTELGLLYTFGDGRHGKLG-----LGMENFTNQFFPTLC 286

Query: 318 SSGLGHSLAI 327
           S+ L  ++ +
Sbjct: 287 SNFLRFAVQL 296



 Score = 57.8 bits (138), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 42/158 (26%), Positives = 72/158 (45%), Gaps = 7/158 (4%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAW 88
           + +FG+   G LGLP  L     +   P RV G+P  V  V+ G  H++ +T    V+A+
Sbjct: 154 LYTFGEPENGKLGLPNELL---MNHRSPQRVLGIPERVIQVACGGGHTVVLTEK-VVYAF 209

Query: 89  GRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKR 148
           G     QLG G      +  +PK +E +    +C        ++ + + G L+ +G  + 
Sbjct: 210 GLGQFGQLGLGTFLFETS--EPKIIERIKDQKICHISCGENHTALMTELGLLYTFGDGRH 267

Query: 149 GQLGLG-KDITEAIVPSRVEALAGEKIVKVSFGWGHAL 185
           G+LGLG ++ T    P+         +  ++ G  H L
Sbjct: 268 GKLGLGMENFTNQFFPTLCSNFLRFAVQLIACGGCHML 305



 Score = 52.8 bits (125), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 67/278 (24%), Positives = 110/278 (39%), Gaps = 72/278 (25%)

Query: 88  WGRNNEVQLGRGALESRATWNDPKRVEGL--DQVNVCAAFASGVVSSAIGDDGSLWVWGK 145
           +G NN  QLG G   S+A    P  ++ L  ++V + A   +  + S   D G ++  G 
Sbjct: 2   FGSNNWGQLGLG---SKAAIIKPTCIKALKPEKVKLAACGRNHTLVST--DTGGVYAAGG 56

Query: 146 SKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIG 205
           +  GQLGLG           V     + I ++S G   + A TEDGKLF WG +++G+IG
Sbjct: 57  NNEGQLGLGDTDDRDTFHQIVFFTPADTIKQLSAGANTSAALTEDGKLFMWGDNSEGQIG 116

Query: 206 NLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVE 265
              K+    P +  + +                              PI W         
Sbjct: 117 LEDKSNVCIPHEVTVGK------------------------------PISW--------- 137

Query: 266 VVDIACGFDHSLVLGRNGVLLSCGSNVYGQLG---------REKQDMGMFPVDINFHPVS 316
              I+CG+ HS  +  +G L + G    G+LG         R  Q +   P  +    + 
Sbjct: 138 ---ISCGYYHSAFVTMDGELYTFGEPENGKLGLPNELLMNHRSPQRVLGIPERV----IQ 190

Query: 317 ISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLG 354
           ++ G GH++ + E          + + ++G  +  QLG
Sbjct: 191 VACGGGHTVVLTE----------KVVYAFGLGQFGQLG 218


>gi|418677141|ref|ZP_13238419.1| chromosome condensation regulator RCC1 repeat protein [Leptospira
           kirschneri serovar Grippotyphosa str. RM52]
 gi|421090648|ref|ZP_15551439.1| chromosome condensation regulator RCC1 repeat protein [Leptospira
           kirschneri str. 200802841]
 gi|400323041|gb|EJO70897.1| chromosome condensation regulator RCC1 repeat protein [Leptospira
           kirschneri serovar Grippotyphosa str. RM52]
 gi|410000530|gb|EKO51159.1| chromosome condensation regulator RCC1 repeat protein [Leptospira
           kirschneri str. 200802841]
          Length = 507

 Score = 89.0 bits (219), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 90/296 (30%), Positives = 137/296 (46%), Gaps = 30/296 (10%)

Query: 29  VVSFGDGSQGALGLPTSLTGVG-----GDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNG 83
           V ++G  S+G LG+  + T        G+   PT +PG+ + V   + G  H+L + ++G
Sbjct: 200 VYTWGANSKGQLGIGNNNTDPAKASDAGNRQPPTEIPGINNAVMG-AYGFNHALILKSDG 258

Query: 84  AVWAWGRNNEVQLGRGA--LESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLW 141
            V A+G+NN  QLG G   L   +  ++P  V  L   NV    A    S+A+ ++G ++
Sbjct: 259 TVVAFGQNNVGQLGNGENNLNRNSFSSNPVNVIQLR--NVIQVIAGSEHSAALTENGEVY 316

Query: 142 VWGKSKRGQLGLG---KDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGY 198
           VWG+++ G LG G      T   VP +VE L   KI +++ G  H LA T DGK++ WG 
Sbjct: 317 VWGRNQYGNLGNGIVSPANTVQSVPVKVEGLP--KIKQIANGRDHILALTYDGKIYSWGL 374

Query: 199 SADGRIGNLGKALESSPLDSNIDRSSESDQEI-----SSSTIEKAQKLVSEGMEK----- 248
           +A G++G  G              + +    I      S  I K  ++   G        
Sbjct: 375 NASGQLGIGGNGNPPPTPIPTKILNIQDVASIWAGGTQSFAILKNGEVKGWGANGNMASL 434

Query: 249 ---EKYMPIIWEPF-LVEGVE-VVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGRE 299
              E   P ++EP   V G++ VV   CG  H+  L  NG +   G N  G LGR 
Sbjct: 435 ALGESNTPKVYEPNKAVVGIDNVVHFGCGATHNFALLGNGEIYGWGWNFKGSLGRN 490



 Score = 69.3 bits (168), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 80/310 (25%), Positives = 131/310 (42%), Gaps = 68/310 (21%)

Query: 67  TSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQV-NVCAAF 125
           T +SAG  HS  + N G ++  GRNN  QLG G + +    ND  R+  +D++ ++ +  
Sbjct: 130 TKLSAGGAHSGFLIN-GELYTVGRNNFGQLGMG-ISTGDNIND--RIMKVDRIRDIFSIH 185

Query: 126 ASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIV---------PSRVEALAGEKIVK 176
            +   S AI   G ++ WG + +GQLG+G + T+            P+ +  +     V 
Sbjct: 186 FNQNNSMAISQSGRVYTWGANSKGQLGIGNNNTDPAKASDAGNRQPPTEIPGI--NNAVM 243

Query: 177 VSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIE 236
            ++G+ HAL    DG +  +G +  G++GN          ++N++R+S S   ++     
Sbjct: 244 GAYGFNHALILKSDGTVVAFGQNNVGQLGN---------GENNLNRNSFSSNPVN----- 289

Query: 237 KAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQL 296
                                  +++   V+ +  G +HS  L  NG +   G N YG L
Sbjct: 290 -----------------------VIQLRNVIQVIAGSEHSAALTENGEVYVWGRNQYGNL 326

Query: 297 GR----EKQDMGMFPVDINFHP--VSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRS 350
           G         +   PV +   P    I++G  H LA+              I SWG N S
Sbjct: 327 GNGIVSPANTVQSVPVKVEGLPKIKQIANGRDHILALTYDGK---------IYSWGLNAS 377

Query: 351 SQLGRMGPDN 360
            QLG  G  N
Sbjct: 378 GQLGIGGNGN 387



 Score = 59.3 bits (142), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 63/244 (25%), Positives = 110/244 (45%), Gaps = 53/244 (21%)

Query: 65  DVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRG------ALESRA-TWNDPKRVEGLD 117
           D+ S+     +S+A++ +G V+ WG N++ QLG G      A  S A     P  + G++
Sbjct: 180 DIFSIHFNQNNSMAISQSGRVYTWGANSKGQLGIGNNNTDPAKASDAGNRQPPTEIPGIN 239

Query: 118 QVNVCA-AFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKD--ITEAIVPSRVEALAGEKI 174
              + A  F   ++   +  DG++  +G++  GQLG G++     +   + V  +    +
Sbjct: 240 NAVMGAYGFNHALI---LKSDGTVVAFGQNNVGQLGNGENNLNRNSFSSNPVNVIQLRNV 296

Query: 175 VKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSST 234
           ++V  G  H+ A TE+G+++ WG +   + GNLG  + S                  ++T
Sbjct: 297 IQVIAGSEHSAALTENGEVYVWGRN---QYGNLGNGIVS-----------------PANT 336

Query: 235 IEKAQKLVSEGMEKEKYMPIIWEPFLVEGV-EVVDIACGFDHSLVLGRNGVLLSCGSNVY 293
           ++                     P  VEG+ ++  IA G DH L L  +G + S G N  
Sbjct: 337 VQSV-------------------PVKVEGLPKIKQIANGRDHILALTYDGKIYSWGLNAS 377

Query: 294 GQLG 297
           GQLG
Sbjct: 378 GQLG 381



 Score = 51.6 bits (122), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 59/246 (23%), Positives = 108/246 (43%), Gaps = 56/246 (22%)

Query: 137 DGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGW 196
           +G L+  G++  GQLG+G    + I    ++      I  + F   +++A ++ G+++ W
Sbjct: 144 NGELYTVGRNNFGQLGMGISTGDNINDRIMKVDRIRDIFSIHFNQNNSMAISQSGRVYTW 203

Query: 197 GYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIW 256
           G ++ G++G +G        ++N D +  SD                 G  +        
Sbjct: 204 GANSKGQLG-IG--------NNNTDPAKASD----------------AGNRQP------- 231

Query: 257 EPFLVEGVE-VVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGM-----FPVDI 310
            P  + G+   V  A GF+H+L+L  +G +++ G N  GQLG  + ++        PV++
Sbjct: 232 -PTEIPGINNAVMGAYGFNHALILKSDGTVVAFGQNNVGQLGNGENNLNRNSFSSNPVNV 290

Query: 311 N--FHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGR--MGPDN----VP 362
               + + + +G  HS A+ E            +  WG N+   LG   + P N    VP
Sbjct: 291 IQLRNVIQVIAGSEHSAALTENGE---------VYVWGRNQYGNLGNGIVSPANTVQSVP 341

Query: 363 LVVEGL 368
           + VEGL
Sbjct: 342 VKVEGL 347


>gi|383865452|ref|XP_003708187.1| PREDICTED: E3 ubiquitin-protein ligase HERC2-like [Megachile
            rotundata]
          Length = 4755

 Score = 89.0 bits (219), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 87/301 (28%), Positives = 146/301 (48%), Gaps = 37/301 (12%)

Query: 19   IFMRSASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDV---TSVSAGHYH 75
            +F+ S  G  + + G+G+ G LGL     G  G+A EP  +P L   V    +V +G  H
Sbjct: 2954 LFVVSQEG-KLYACGEGTNGRLGL-----GDDGNACEPKPIPFLSQYVIKKVAVHSGGKH 3007

Query: 76   SLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIG 135
            +LA+T +G V++WG   + +LG G   S    + P+ +E L    +         S+AI 
Sbjct: 3008 ALALTQDGRVFSWGEGEDGKLGHGNCSS---LDKPRLIESLKSKRIRDVACGSGHSAAIT 3064

Query: 136  DDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGW--GHALAQTEDGKL 193
              G L+ WG  + G+LG G D    + P  V++L G+++++V+ G      +A T DG +
Sbjct: 3065 SSGELYTWGLGEYGRLGHG-DTNTQLKPKLVQSLVGQRVIQVACGSRDAQTMALTADGSV 3123

Query: 194  FGWGYSADGRIGNLGKALESSPLDSNIDRSS-------ESDQEISSSTIEKAQKLVSEGM 246
            + WG    G++G  G     +PL   +DR +       E   + S + + K  ++ + G 
Sbjct: 3124 YSWGDGDFGKLGRGGSDGCYTPL--LVDRLNGLGVVQIECGAQFSLA-LTKYGEVWTWG- 3179

Query: 247  EKEKYMPI-------IWEPFLVEGV---EVVDIACGFDHSLVLGRNGVLLSCGSNVYGQL 296
             K  Y  +       + +P LVEG+   +V+ +A G  H L +   G + + G N +GQ 
Sbjct: 3180 -KGDYFRLGHGNDHHVRKPTLVEGLRGKKVIHVAVGALHCLAVTDTGQVYAWGDNDHGQQ 3238

Query: 297  G 297
            G
Sbjct: 3239 G 3239



 Score = 82.8 bits (203), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 85/312 (27%), Positives = 138/312 (44%), Gaps = 61/312 (19%)

Query: 68   SVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFAS 127
            +V++G  H LA+++ G V++WG  ++ +LG G   +R +++ PK +E L    +      
Sbjct: 3987 AVNSGGKHCLALSSEGHVYSWGEGDDGKLGHG---NRLSYDRPKLIEELLGTEIVDVACG 4043

Query: 128  GVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHA--L 185
            G  S+AI   G L+ WGK + G+LG G D  + + P  VEAL   K++ V+ G G A  L
Sbjct: 4044 GHHSAAITSAGWLYTWGKGRYGRLGHG-DSEDQLTPKLVEALQDYKVIDVACGSGDAQTL 4102

Query: 186  AQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEG 245
              T+D  ++ WG   DG  G LG+                                 S+G
Sbjct: 4103 CVTDDDNVWSWG---DGDYGKLGRG-------------------------------GSDG 4128

Query: 246  MEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGM 305
             +    +P+  E     G+ V+ + CG   S+ L R+G + + G   Y +LG    D   
Sbjct: 4129 CK----VPMKIESL--AGLGVIKVECGSQFSVALTRSGSIYTWGKGDYHRLGHGTDDHVR 4182

Query: 306  FPVDINF----HPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQL--GRMGPD 359
             P  +        +SI++G  H +A C  +          + +WG N   QL  G     
Sbjct: 4183 RPRKVAALQGKKIISIATGSLHCVA-CSDKGE--------VFTWGDNDEGQLGDGTTCAL 4233

Query: 360  NVPLVVEGLEGE 371
              P +V  L+G+
Sbjct: 4234 QRPRLVHALQGK 4245



 Score = 81.3 bits (199), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 55/165 (33%), Positives = 81/165 (49%), Gaps = 12/165 (7%)

Query: 50  GGDAYEPTRVPGLPSDVTSVSAGH---YHSLAVTNNGAVWAWGRNNEVQLGRGALESRAT 106
           G +   P RV G      ++ A H    H LA+T + +V++WG  +  +LG G    R  
Sbjct: 489 GSETQYPQRVYGFSDKFVAMIASHPDGKHYLALTEDSSVYSWGNGDGGRLGHG---DRTW 545

Query: 107 WNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRV 166
           + +PK +E L   N+         S+A+  +G L+ WG+   G+LG G    + +VP+ V
Sbjct: 546 YEEPKLIESLVDKNITFIACGSTYSAALSSNGELYTWGRGNYGRLGHGNS-DDVMVPTLV 604

Query: 167 EALAGEKIVKVSFGWG--HALAQTEDGKLFGWGYSADGRIGNLGK 209
            AL G  IV V+ G G    L  T  G +F WG   DG  G LG+
Sbjct: 605 SALNGHMIVYVACGSGDSQTLCVTASGIVFSWG---DGDYGKLGR 646



 Score = 80.5 bits (197), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 62/208 (29%), Positives = 102/208 (49%), Gaps = 14/208 (6%)

Query: 2   RLLKSVVHNHVNVLTSRIFMRSA--SGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRV 59
           +L++S+V  ++  +       +A  S   + ++G G+ G LG      G   D   PT V
Sbjct: 550 KLIESLVDKNITFIACGSTYSAALSSNGELYTWGRGNYGRLG-----HGNSDDVMVPTLV 604

Query: 60  PGLPSDV---TSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGL 116
             L   +    +  +G   +L VT +G V++WG  +  +LGRG      T   PK V+ L
Sbjct: 605 SALNGHMIVYVACGSGDSQTLCVTASGIVFSWGDGDYGKLGRGGCNGSKT---PKIVDKL 661

Query: 117 DQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVK 176
             +NV   +  G  S+A+   G ++ WGK +  +LG G +      P  +EAL  +K+ +
Sbjct: 662 LDINVAKVYCGGQFSAALTAYGEVYTWGKGEAYRLGHGNE-EHVRYPKAIEALKTKKVKE 720

Query: 177 VSFGWGHALAQTEDGKLFGWGYSADGRI 204
           +  G  H LA TED  ++GWG +  G+I
Sbjct: 721 LCVGSLHVLALTEDQLVYGWGRNDYGQI 748



 Score = 75.5 bits (184), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 58/180 (32%), Positives = 89/180 (49%), Gaps = 10/180 (5%)

Query: 29   VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAW 88
            V S+G+G  G LG    L+       E      L +++  V+ G +HS A+T+ G ++ W
Sbjct: 4004 VYSWGEGDDGKLGHGNRLSYDRPKLIEEL----LGTEIVDVACGGHHSAAITSAGWLYTW 4059

Query: 89   GRNNEVQLGRGALESRATWNDPKRVEGLDQVNVC-AAFASGVVSS-AIGDDGSLWVWGKS 146
            G+    +LG G  E + T   PK VE L    V   A  SG   +  + DD ++W WG  
Sbjct: 4060 GKGRYGRLGHGDSEDQLT---PKLVEALQDYKVIDVACGSGDAQTLCVTDDDNVWSWGDG 4116

Query: 147  KRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGN 206
              G+LG G       VP ++E+LAG  ++KV  G   ++A T  G ++ WG     R+G+
Sbjct: 4117 DYGKLGRGGS-DGCKVPMKIESLAGLGVIKVECGSQFSVALTRSGSIYTWGKGDYHRLGH 4175



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 55/182 (30%), Positives = 89/182 (48%), Gaps = 14/182 (7%)

Query: 29   VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPS----DVTSVSAGHYHSLAVTNNGA 84
            + ++G G  G LG      G   D   P  V  L      DV +  +G   +L VT++  
Sbjct: 4056 LYTWGKGRYGRLG-----HGDSEDQLTPKLVEALQDYKVIDV-ACGSGDAQTLCVTDDDN 4109

Query: 85   VWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWG 144
            VW+WG  +  +LGRG  +       P ++E L  + V         S A+   GS++ WG
Sbjct: 4110 VWSWGDGDYGKLGRGGSDGCKV---PMKIESLAGLGVIKVECGSQFSVALTRSGSIYTWG 4166

Query: 145  KSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRI 204
            K    +LG G D      P +V AL G+KI+ ++ G  H +A ++ G++F WG + +G++
Sbjct: 4167 KGDYHRLGHGTD-DHVRRPRKVAALQGKKIISIATGSLHCVACSDKGEVFTWGDNDEGQL 4225

Query: 205  GN 206
            G+
Sbjct: 4226 GD 4227



 Score = 70.5 bits (171), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 45/141 (31%), Positives = 73/141 (51%), Gaps = 4/141 (2%)

Query: 75   HSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAI 134
             ++A+T +G+V++WG  +  +LGRG  +   T   P  V+ L+ + V         S A+
Sbjct: 3113 QTMALTADGSVYSWGDGDFGKLGRGGSDGCYT---PLLVDRLNGLGVVQIECGAQFSLAL 3169

Query: 135  GDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLF 194
               G +W WGK    +LG G D      P+ VE L G+K++ V+ G  H LA T+ G+++
Sbjct: 3170 TKYGEVWTWGKGDYFRLGHGND-HHVRKPTLVEGLRGKKVIHVAVGALHCLAVTDTGQVY 3228

Query: 195  GWGYSADGRIGNLGKALESSP 215
             WG +  G+ GN    +   P
Sbjct: 3229 AWGDNDHGQQGNGSTIVNKKP 3249



 Score = 70.5 bits (171), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 75/297 (25%), Positives = 121/297 (40%), Gaps = 59/297 (19%)

Query: 82   NGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLW 141
            +GA++ WG N+  QL  G LE  A    P   E L  +             A+  DG ++
Sbjct: 3895 SGAIYGWGHNHRGQL--GGLEG-AKVKLPVLCESLSALRPVQLTGGEQTLFAVTADGKVY 3951

Query: 142  VWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWG--HALAQTEDGKLFGWGYS 199
              G    G+LG+G      ++P+ +E++    + KV+   G  H LA + +G ++ WG  
Sbjct: 3952 ATGYGAVGRLGIG-GTDSVMMPTLLESIQHVFVKKVAVNSGGKHCLALSSEGHVYSWGEG 4010

Query: 200  ADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPF 259
             DG++G+  +     P                        KL+ E +             
Sbjct: 4011 DDGKLGHGNRLSYDRP------------------------KLIEELL------------- 4033

Query: 260  LVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDI----NFHPV 315
               G E+VD+ACG  HS  +   G L + G   YG+LG    +  + P  +    ++  +
Sbjct: 4034 ---GTEIVDVACGGHHSAAITSAGWLYTWGKGRYGRLGHGDSEDQLTPKLVEALQDYKVI 4090

Query: 316  SISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPD--NVPLVVEGLEG 370
             ++ G G +  +C     NV        SWG     +LGR G D   VP+ +E L G
Sbjct: 4091 DVACGSGDAQTLCVTDDDNVW-------SWGDGDYGKLGRGGSDGCKVPMKIESLAG 4140



 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 87/327 (26%), Positives = 131/327 (40%), Gaps = 67/327 (20%)

Query: 57   TRVPGLPSD--VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVE 114
            T V  L SD  +    A     +    + AV+ WG N++ QLG G   S+     P   E
Sbjct: 2881 TSVSFLASDWEIVQEQASSQRGVETPQHSAVYVWGLNDKDQLG-GLKGSKIKL--PVYSE 2937

Query: 115  GLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKI 174
             L ++              +  +G L+  G+   G+LGLG D   A  P  +  L+   I
Sbjct: 2938 SLSKLKPVHIAGGSKTLFVVSQEGKLYACGEGTNGRLGLGDD-GNACEPKPIPFLSQYVI 2996

Query: 175  VKVSFGWG--HALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISS 232
             KV+   G  HALA T+DG++F WG   DG++G+ G         S++D+          
Sbjct: 2997 KKVAVHSGGKHALALTQDGRVFSWGEGEDGKLGH-GNC-------SSLDK---------- 3038

Query: 233  STIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVE---VVDIACGFDHSLVLGRNGVLLSCG 289
                                     P L+E ++   + D+ACG  HS  +  +G L + G
Sbjct: 3039 -------------------------PRLIESLKSKRIRDVACGSGHSAAITSSGELYTWG 3073

Query: 290  SNVYGQLGREKQDMGMFPVDINFHPVSISSGLGHSL--AICEVRSSNVTG-GARG-IVSW 345
               YG+LG           +    P  + S +G  +    C  R +      A G + SW
Sbjct: 3074 LGEYGRLGHGD-------TNTQLKPKLVQSLVGQRVIQVACGSRDAQTMALTADGSVYSW 3126

Query: 346  GWNRSSQLGRMGPD--NVPLVVEGLEG 370
            G     +LGR G D    PL+V+ L G
Sbjct: 3127 GDGDFGKLGRGGSDGCYTPLLVDRLNG 3153



 Score = 61.6 bits (148), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 49/158 (31%), Positives = 74/158 (46%), Gaps = 12/158 (7%)

Query: 31   SFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPS-DVTSVSAGHYHSLAVTNNGAVWAWG 89
            S+GDG  G LG      G       P ++  L    V  V  G   S+A+T +G+++ WG
Sbjct: 4112 SWGDGDYGKLG-----RGGSDGCKVPMKIESLAGLGVIKVECGSQFSVALTRSGSIYTWG 4166

Query: 90   RNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRG 149
            + +  +LG G  +       P++V  L    + +     +   A  D G ++ WG +  G
Sbjct: 4167 KGDYHRLGHGTDDH---VRRPRKVAALQGKKIISIATGSLHCVACSDKGEVFTWGDNDEG 4223

Query: 150  QLGLGKDITEAIV-PSRVEALAGEKIVKVSFGWGHALA 186
            QLG G   T A+  P  V AL G+KI +V+ G  H LA
Sbjct: 4224 QLGDG--TTCALQRPRLVHALQGKKITRVACGSAHTLA 4259



 Score = 60.8 bits (146), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 79/309 (25%), Positives = 126/309 (40%), Gaps = 55/309 (17%)

Query: 69   VSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNV--CAAFA 126
            ++ G     AVT +G V+A G     +LG G  +S      P  +E +  V V   A  +
Sbjct: 3934 LTGGEQTLFAVTADGKVYATGYGAVGRLGIGGTDSVMM---PTLLESIQHVFVKKVAVNS 3990

Query: 127  SGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALA 186
             G    A+  +G ++ WG+   G+LG G  ++    P  +E L G +IV V+ G  H+ A
Sbjct: 3991 GGKHCLALSSEGHVYSWGEGDDGKLGHGNRLSYD-RPKLIEELLGTEIVDVACGGHHSAA 4049

Query: 187  QTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGM 246
             T  G L+ WG    GR+G+                  +S+ +++   +E  Q       
Sbjct: 4050 ITSAGWLYTWGKGRYGRLGH-----------------GDSEDQLTPKLVEALQD------ 4086

Query: 247  EKEKYMPIIWEPFLVEGVEVVDIACGF--DHSLVLGRNGVLLSCGSNVYGQLGREKQDMG 304
                              +V+D+ACG     +L +  +  + S G   YG+LGR   D  
Sbjct: 4087 -----------------YKVIDVACGSGDAQTLCVTDDDNVWSWGDGDYGKLGRGGSDGC 4129

Query: 305  MFPVDINFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPDNV--P 362
              P+ I        +GLG     C  + S     +  I +WG     +LG    D+V  P
Sbjct: 4130 KVPMKIES-----LAGLGVIKVECGSQFSVALTRSGSIYTWGKGDYHRLGHGTDDHVRRP 4184

Query: 363  LVVEGLEGE 371
              V  L+G+
Sbjct: 4185 RKVAALQGK 4193



 Score = 43.5 bits (101), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 59/220 (26%), Positives = 87/220 (39%), Gaps = 57/220 (25%)

Query: 158 TEAIVPSRVEALAGEKIVKVSF--GWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSP 215
           +E   P RV   + + +  ++      H LA TED  ++ WG    GR+G+         
Sbjct: 490 SETQYPQRVYGFSDKFVAMIASHPDGKHYLALTEDSSVYSWGNGDGGRLGH--------- 540

Query: 216 LDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDH 275
                DR+   + ++  S ++K                            +  IACG  +
Sbjct: 541 ----GDRTWYEEPKLIESLVDK---------------------------NITFIACGSTY 569

Query: 276 SLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPV---DINFHP-VSISSGLGHSLAICEVR 331
           S  L  NG L + G   YG+LG    D  M P     +N H  V ++ G G S  +C   
Sbjct: 570 SAALSSNGELYTWGRGNYGRLGHGNSDDVMVPTLVSALNGHMIVYVACGSGDSQTLC--- 626

Query: 332 SSNVTGGARGIV-SWGWNRSSQLGRMGPD--NVPLVVEGL 368
              VT  A GIV SWG     +LGR G +    P +V+ L
Sbjct: 627 ---VT--ASGIVFSWGDGDYGKLGRGGCNGSKTPKIVDKL 661



 Score = 37.7 bits (86), Expect = 10.0,   Method: Compositional matrix adjust.
 Identities = 25/90 (27%), Positives = 40/90 (44%), Gaps = 9/90 (10%)

Query: 28   AVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLP-SDVTSVSAGHYHSLAVTNNGAVW 86
            ++ ++G G    LG      G       P +V  L    + S++ G  H +A ++ G V+
Sbjct: 4161 SIYTWGKGDYHRLG-----HGTDDHVRRPRKVAALQGKKIISIATGSLHCVACSDKGEVF 4215

Query: 87   AWGRNNEVQLGRGALESRATWNDPKRVEGL 116
             WG N+E QLG G   +      P+ V  L
Sbjct: 4216 TWGDNDEGQLGDG---TTCALQRPRLVHAL 4242


>gi|297694075|ref|XP_002824322.1| PREDICTED: RCC1 and BTB domain-containing protein 1 [Pongo abelii]
 gi|332241941|ref|XP_003270143.1| PREDICTED: RCC1 and BTB domain-containing protein 1 [Nomascus
           leucogenys]
          Length = 531

 Score = 89.0 bits (219), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 54/162 (33%), Positives = 88/162 (54%), Gaps = 5/162 (3%)

Query: 62  LPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNV 121
           L   V  V+ G +HS+A+  +G V+AWG NN  Q+G G+  ++ T   P++V     +  
Sbjct: 126 LIKQVVEVACGSHHSMALAADGEVFAWGYNNCGQVGSGSTANQPT---PRKVTNCLHIKR 182

Query: 122 CAAFASGVVSS-AIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFG 180
               A G  SS A+ D+G ++ WG +  GQLGLG +  + + P RV AL    + ++  G
Sbjct: 183 VVGIACGQTSSMAVLDNGEVYGWGYNGNGQLGLGNNGNQ-LTPVRVAALHSVCVNQIVCG 241

Query: 181 WGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDR 222
           + H LA T++G L+ WG +  G++G   K    SP    +++
Sbjct: 242 YAHTLALTDEGLLYAWGANTYGQLGTGNKNNLLSPAHIMVEK 283



 Score = 75.9 bits (185), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 71/293 (24%), Positives = 117/293 (39%), Gaps = 67/293 (22%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLP-SDVTSVSAGH-YHSLAVTNNGAVW 86
           V  FG      LG     TG       P ++ GL    + S+S G   H L  T +G V+
Sbjct: 43  VFVFGLNYSNCLG-----TGDNQSTLVPKKLEGLCGKKIKSLSYGSGPHVLLSTEDGVVY 97

Query: 87  AWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVV---------SSAIGDD 137
           AWG N   QLG G              +G+  + VC       V         S A+  D
Sbjct: 98  AWGHNGYSQLGNGTTN-----------QGIAPIQVCTNLLIKQVVEVACGSHHSMALAAD 146

Query: 138 GSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWG 197
           G ++ WG +  GQ+G G    +         L  +++V ++ G   ++A  ++G+++GWG
Sbjct: 147 GEVFAWGYNNCGQVGSGSTANQPTPRKVTNCLHIKRVVGIACGQTSSMAVLDNGEVYGWG 206

Query: 198 YSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWE 257
           Y+ +G++G      + +P+             +++                         
Sbjct: 207 YNGNGQLGLGNNGNQLTPV------------RVAA------------------------- 229

Query: 258 PFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDI 310
              +  V V  I CG+ H+L L   G+L + G+N YGQLG   ++  + P  I
Sbjct: 230 ---LHSVCVNQIVCGYAHTLALTDEGLLYAWGANTYGQLGTGNKNNLLSPAHI 279



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 77/293 (26%), Positives = 129/293 (44%), Gaps = 60/293 (20%)

Query: 76  SLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCA-AFASGVVSSAI 134
           +L VT+N  V+ +G N    LG G  +S      PK++EGL    + + ++ SG      
Sbjct: 34  ALYVTDNDEVFVFGLNYSNCLGTGDNQSTLV---PKKLEGLCGKKIKSLSYGSGPHVLLS 90

Query: 135 GDDGSLWVWGKSKRGQLGLGKDITEAIVPSRV-EALAGEKIVKVSFGWGHALAQTEDGKL 193
            +DG ++ WG +   QLG G    + I P +V   L  +++V+V+ G  H++A   DG++
Sbjct: 91  TEDGVVYAWGHNGYSQLGNGT-TNQGIAPIQVCTNLLIKQVVEVACGSHHSMALAADGEV 149

Query: 194 FGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMP 253
           F WGY+  G++G+   A + +P                        + V+  +  ++   
Sbjct: 150 FAWGYNNCGQVGSGSTANQPTP------------------------RKVTNCLHIKR--- 182

Query: 254 IIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDI-NF 312
                       VV IACG   S+ +  NG +   G N  GQLG       + PV +   
Sbjct: 183 ------------VVGIACGQTSSMAVLDNGEVYGWGYNGNGQLGLGNNGNQLTPVRVAAL 230

Query: 313 HPVSIS---SGLGHSLAICEVRSSNVTGGARGIV-SWGWNRSSQLGRMGPDNV 361
           H V ++    G  H+LA+ +           G++ +WG N   QLG    +N+
Sbjct: 231 HSVCVNQIVCGYAHTLALTD----------EGLLYAWGANTYGQLGTGNKNNL 273


>gi|194221881|ref|XP_001489975.2| PREDICTED: RCC1 and BTB domain-containing protein 1 [Equus
           caballus]
          Length = 531

 Score = 89.0 bits (219), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 54/162 (33%), Positives = 88/162 (54%), Gaps = 5/162 (3%)

Query: 62  LPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNV 121
           L   V  V+ G +HS+A+  +G V+AWG NN  Q+G G+  ++ T   P++V     +  
Sbjct: 126 LIKQVVEVACGSHHSMALAADGEVFAWGYNNCGQVGSGSTANQPT---PRKVTNCLHIKR 182

Query: 122 CAAFASGVVSS-AIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFG 180
               A G  SS A+ D+G ++ WG +  GQLGLG +  + + P RV AL    + ++  G
Sbjct: 183 VVGIACGQTSSMAVLDNGEVYGWGYNGNGQLGLGNNGNQ-LTPVRVAALHSVCVNQIVCG 241

Query: 181 WGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDR 222
           + H LA T++G L+ WG +  G++G   K    SP    +++
Sbjct: 242 YAHTLALTDEGLLYAWGANTYGQLGTGNKNNLLSPAHIMVEK 283



 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 70/293 (23%), Positives = 116/293 (39%), Gaps = 67/293 (22%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLP-SDVTSVSAGH-YHSLAVTNNGAVW 86
           V  FG      LG     TG       P ++  L    + S+S G   H L  T +G V+
Sbjct: 43  VFVFGLNYSNCLG-----TGDNQSTLIPKKLEALCGKKIKSLSYGSGPHVLLSTEDGVVY 97

Query: 87  AWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVV---------SSAIGDD 137
           AWG N   QLG G              +G+  + VC       V         S A+  D
Sbjct: 98  AWGHNGYSQLGNGTTN-----------QGIAPIQVCTNLLIKQVVEVACGSHHSMALAAD 146

Query: 138 GSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWG 197
           G ++ WG +  GQ+G G    +         L  +++V ++ G   ++A  ++G+++GWG
Sbjct: 147 GEVFAWGYNNCGQVGSGSTANQPTPRKVTNCLHIKRVVGIACGQTSSMAVLDNGEVYGWG 206

Query: 198 YSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWE 257
           Y+ +G++G      + +P+             +++                         
Sbjct: 207 YNGNGQLGLGNNGNQLTPV------------RVAA------------------------- 229

Query: 258 PFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDI 310
              +  V V  I CG+ H+L L   G+L + G+N YGQLG   ++  + P  I
Sbjct: 230 ---LHSVCVNQIVCGYAHTLALTDEGLLYAWGANTYGQLGTGNKNNLLSPAHI 279



 Score = 67.8 bits (164), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 76/293 (25%), Positives = 128/293 (43%), Gaps = 60/293 (20%)

Query: 76  SLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCA-AFASGVVSSAI 134
           +L VT+N  V+ +G N    LG G  +S      PK++E L    + + ++ SG      
Sbjct: 34  ALYVTDNDEVFVFGLNYSNCLGTGDNQSTLI---PKKLEALCGKKIKSLSYGSGPHVLLS 90

Query: 135 GDDGSLWVWGKSKRGQLGLGKDITEAIVPSRV-EALAGEKIVKVSFGWGHALAQTEDGKL 193
            +DG ++ WG +   QLG G    + I P +V   L  +++V+V+ G  H++A   DG++
Sbjct: 91  TEDGVVYAWGHNGYSQLGNGT-TNQGIAPIQVCTNLLIKQVVEVACGSHHSMALAADGEV 149

Query: 194 FGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMP 253
           F WGY+  G++G+   A + +P                        + V+  +  ++   
Sbjct: 150 FAWGYNNCGQVGSGSTANQPTP------------------------RKVTNCLHIKR--- 182

Query: 254 IIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDI-NF 312
                       VV IACG   S+ +  NG +   G N  GQLG       + PV +   
Sbjct: 183 ------------VVGIACGQTSSMAVLDNGEVYGWGYNGNGQLGLGNNGNQLTPVRVAAL 230

Query: 313 HPVSIS---SGLGHSLAICEVRSSNVTGGARGIV-SWGWNRSSQLGRMGPDNV 361
           H V ++    G  H+LA+ +           G++ +WG N   QLG    +N+
Sbjct: 231 HSVCVNQIVCGYAHTLALTD----------EGLLYAWGANTYGQLGTGNKNNL 273


>gi|418687991|ref|ZP_13249148.1| chromosome condensation regulator RCC1 repeat protein [Leptospira
           kirschneri serovar Grippotyphosa str. Moskva]
 gi|418742687|ref|ZP_13299057.1| chromosome condensation regulator RCC1 repeat protein [Leptospira
           kirschneri serovar Valbuzzi str. 200702274]
 gi|410737415|gb|EKQ82156.1| chromosome condensation regulator RCC1 repeat protein [Leptospira
           kirschneri serovar Grippotyphosa str. Moskva]
 gi|410750062|gb|EKR07045.1| chromosome condensation regulator RCC1 repeat protein [Leptospira
           kirschneri serovar Valbuzzi str. 200702274]
          Length = 510

 Score = 89.0 bits (219), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 90/296 (30%), Positives = 137/296 (46%), Gaps = 30/296 (10%)

Query: 29  VVSFGDGSQGALGLPTSLTGVG-----GDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNG 83
           V ++G  S+G LG+  + T        G+   PT +PG+ + V   + G  H+L + ++G
Sbjct: 200 VYTWGANSKGQLGIGNNNTDPAKASDAGNRQPPTEIPGINNAVMG-AYGFNHALILKSDG 258

Query: 84  AVWAWGRNNEVQLGRGA--LESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLW 141
            V A+G+NN  QLG G   L   +  ++P  V  L   NV    A    S+A+ ++G ++
Sbjct: 259 TVVAFGQNNVGQLGNGENNLNRNSFSSNPVNVIQLR--NVIQVIAGSEHSAALTENGEVY 316

Query: 142 VWGKSKRGQLGLG---KDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGY 198
           VWG+++ G LG G      T   VP +VE L   KI +++ G  H LA T DGK++ WG 
Sbjct: 317 VWGRNQYGNLGNGIVSPANTVQSVPVKVEGLP--KIKQIANGRDHILALTYDGKIYSWGL 374

Query: 199 SADGRIGNLGKALESSPLDSNIDRSSESDQEI-----SSSTIEKAQKLVSEGMEK----- 248
           +A G++G  G              + +    I      S  I K  ++   G        
Sbjct: 375 NASGQLGIGGNGNPPPTPIPTKILNIQDVASIWAGGTQSFAILKNGEVKGWGANGNMASL 434

Query: 249 ---EKYMPIIWEPF-LVEGVE-VVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGRE 299
              E   P ++EP   V G++ VV   CG  H+  L  NG +   G N  G LGR 
Sbjct: 435 ALGESNTPKVYEPNKAVVGIDNVVHFGCGATHNFALLGNGEIYGWGWNFKGSLGRN 490



 Score = 68.6 bits (166), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 80/310 (25%), Positives = 131/310 (42%), Gaps = 68/310 (21%)

Query: 67  TSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQV-NVCAAF 125
           T +SAG  HS  + N G ++  GRNN  QLG G + +    ND  R+  +D++ ++ +  
Sbjct: 130 TKLSAGGAHSGFLIN-GELYTVGRNNFGQLGMG-ISTGDNIND--RIMKVDRIRDIFSIH 185

Query: 126 ASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIV---------PSRVEALAGEKIVK 176
            +   S AI   G ++ WG + +GQLG+G + T+            P+ +  +     V 
Sbjct: 186 FNQNNSIAISQSGRVYTWGANSKGQLGIGNNNTDPAKASDAGNRQPPTEIPGI--NNAVM 243

Query: 177 VSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIE 236
            ++G+ HAL    DG +  +G +  G++GN          ++N++R+S S   ++     
Sbjct: 244 GAYGFNHALILKSDGTVVAFGQNNVGQLGN---------GENNLNRNSFSSNPVN----- 289

Query: 237 KAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQL 296
                                  +++   V+ +  G +HS  L  NG +   G N YG L
Sbjct: 290 -----------------------VIQLRNVIQVIAGSEHSAALTENGEVYVWGRNQYGNL 326

Query: 297 GR----EKQDMGMFPVDINFHP--VSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRS 350
           G         +   PV +   P    I++G  H LA+              I SWG N S
Sbjct: 327 GNGIVSPANTVQSVPVKVEGLPKIKQIANGRDHILALTYDGK---------IYSWGLNAS 377

Query: 351 SQLGRMGPDN 360
            QLG  G  N
Sbjct: 378 GQLGIGGNGN 387



 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 63/244 (25%), Positives = 110/244 (45%), Gaps = 53/244 (21%)

Query: 65  DVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRG------ALESRA-TWNDPKRVEGLD 117
           D+ S+     +S+A++ +G V+ WG N++ QLG G      A  S A     P  + G++
Sbjct: 180 DIFSIHFNQNNSIAISQSGRVYTWGANSKGQLGIGNNNTDPAKASDAGNRQPPTEIPGIN 239

Query: 118 QVNVCA-AFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKD--ITEAIVPSRVEALAGEKI 174
              + A  F   ++   +  DG++  +G++  GQLG G++     +   + V  +    +
Sbjct: 240 NAVMGAYGFNHALI---LKSDGTVVAFGQNNVGQLGNGENNLNRNSFSSNPVNVIQLRNV 296

Query: 175 VKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSST 234
           ++V  G  H+ A TE+G+++ WG +   + GNLG  + S                  ++T
Sbjct: 297 IQVIAGSEHSAALTENGEVYVWGRN---QYGNLGNGIVS-----------------PANT 336

Query: 235 IEKAQKLVSEGMEKEKYMPIIWEPFLVEGV-EVVDIACGFDHSLVLGRNGVLLSCGSNVY 293
           ++                     P  VEG+ ++  IA G DH L L  +G + S G N  
Sbjct: 337 VQSV-------------------PVKVEGLPKIKQIANGRDHILALTYDGKIYSWGLNAS 377

Query: 294 GQLG 297
           GQLG
Sbjct: 378 GQLG 381



 Score = 51.6 bits (122), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 59/246 (23%), Positives = 107/246 (43%), Gaps = 56/246 (22%)

Query: 137 DGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGW 196
           +G L+  G++  GQLG+G    + I    ++      I  + F   +++A ++ G+++ W
Sbjct: 144 NGELYTVGRNNFGQLGMGISTGDNINDRIMKVDRIRDIFSIHFNQNNSIAISQSGRVYTW 203

Query: 197 GYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIW 256
           G ++ G++G +G        ++N D +  SD                         P   
Sbjct: 204 GANSKGQLG-IG--------NNNTDPAKASD--------------------AGNRQP--- 231

Query: 257 EPFLVEGVE-VVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGM-----FPVDI 310
            P  + G+   V  A GF+H+L+L  +G +++ G N  GQLG  + ++        PV++
Sbjct: 232 -PTEIPGINNAVMGAYGFNHALILKSDGTVVAFGQNNVGQLGNGENNLNRNSFSSNPVNV 290

Query: 311 N--FHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGR--MGPDN----VP 362
               + + + +G  HS A+ E            +  WG N+   LG   + P N    VP
Sbjct: 291 IQLRNVIQVIAGSEHSAALTENGE---------VYVWGRNQYGNLGNGIVSPANTVQSVP 341

Query: 363 LVVEGL 368
           + VEGL
Sbjct: 342 VKVEGL 347


>gi|57242759|ref|NP_060661.3| RCC1 and BTB domain-containing protein 1 [Homo sapiens]
 gi|114649667|ref|XP_001155108.1| PREDICTED: RCC1 and BTB domain-containing protein 1 isoform 3 [Pan
           troglodytes]
 gi|397476979|ref|XP_003809865.1| PREDICTED: RCC1 and BTB domain-containing protein 1 [Pan paniscus]
 gi|74751227|sp|Q8NDN9.1|RCBT1_HUMAN RecName: Full=RCC1 and BTB domain-containing protein 1; AltName:
           Full=Chronic lymphocytic leukemia deletion region gene 7
           protein; Short=CLL deletion region gene 7 protein;
           AltName: Full=Regulator of chromosome condensation and
           BTB domain-containing protein 1
 gi|21739270|emb|CAD38683.1| hypothetical protein [Homo sapiens]
 gi|117646918|emb|CAL37574.1| hypothetical protein [synthetic construct]
 gi|208965426|dbj|BAG72727.1| regulator of chromosome condensation (RCC1) and BTB (POZ) domain
           containing protein 1 [synthetic construct]
 gi|410208766|gb|JAA01602.1| regulator of chromosome condensation (RCC1) and BTB (POZ) domain
           containing protein 1 [Pan troglodytes]
 gi|410264076|gb|JAA20004.1| regulator of chromosome condensation (RCC1) and BTB (POZ) domain
           containing protein 1 [Pan troglodytes]
 gi|410293802|gb|JAA25501.1| regulator of chromosome condensation (RCC1) and BTB (POZ) domain
           containing protein 1 [Pan troglodytes]
 gi|410338539|gb|JAA38216.1| regulator of chromosome condensation (RCC1) and BTB (POZ) domain
           containing protein 1 [Pan troglodytes]
          Length = 531

 Score = 89.0 bits (219), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 54/162 (33%), Positives = 88/162 (54%), Gaps = 5/162 (3%)

Query: 62  LPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNV 121
           L   V  V+ G +HS+A+  +G V+AWG NN  Q+G G+  ++ T   P++V     +  
Sbjct: 126 LIKQVVEVACGSHHSMALAADGEVFAWGYNNCGQVGSGSTANQPT---PRKVTNCLHIKR 182

Query: 122 CAAFASGVVSS-AIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFG 180
               A G  SS A+ D+G ++ WG +  GQLGLG +  + + P RV AL    + ++  G
Sbjct: 183 VVGIACGQTSSMAVLDNGEVYGWGYNGNGQLGLGNNGNQ-LTPVRVAALHSVCVNQIVCG 241

Query: 181 WGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDR 222
           + H LA T++G L+ WG +  G++G   K    SP    +++
Sbjct: 242 YAHTLALTDEGLLYAWGANTYGQLGTGNKNNLLSPAHIMVEK 283



 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 72/293 (24%), Positives = 117/293 (39%), Gaps = 67/293 (22%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLP-SDVTSVSAGH-YHSLAVTNNGAVW 86
           V  FG      LG     TG       P ++ GL    + S+S G   H L  T +G V+
Sbjct: 43  VFVFGLNYSNCLG-----TGDNQSTLVPKKLEGLCGKKIKSLSYGSGPHVLLSTEDGVVY 97

Query: 87  AWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVV---------SSAIGDD 137
           AWG N   QLG G              +G+  V VC       V         S A+  D
Sbjct: 98  AWGHNGYSQLGNGTTN-----------QGIAPVQVCTNLLIKQVVEVACGSHHSMALAAD 146

Query: 138 GSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWG 197
           G ++ WG +  GQ+G G    +         L  +++V ++ G   ++A  ++G+++GWG
Sbjct: 147 GEVFAWGYNNCGQVGSGSTANQPTPRKVTNCLHIKRVVGIACGQTSSMAVLDNGEVYGWG 206

Query: 198 YSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWE 257
           Y+ +G++G      + +P+             +++                         
Sbjct: 207 YNGNGQLGLGNNGNQLTPV------------RVAA------------------------- 229

Query: 258 PFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDI 310
              +  V V  I CG+ H+L L   G+L + G+N YGQLG   ++  + P  I
Sbjct: 230 ---LHSVCVNQIVCGYAHTLALTDEGLLYAWGANTYGQLGTGNKNNLLSPAHI 279



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 64/250 (25%), Positives = 109/250 (43%), Gaps = 35/250 (14%)

Query: 134 IGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWG-HALAQTEDGK 192
           + D+  ++V+G +    LG G D    +VP ++E L G+KI  +S+G G H L  TEDG 
Sbjct: 37  VTDNDEVFVFGLNYSNCLGTG-DNQSTLVPKKLEGLCGKKIKSLSYGSGPHVLLSTEDGV 95

Query: 193 LFGWGYSADGRIGN----------------LGKALESSPLDSNIDRSSESDQEISSSTIE 236
           ++ WG++   ++GN                L K +      S+   +  +D E+ +    
Sbjct: 96  VYAWGHNGYSQLGNGTTNQGIAPVQVCTNLLIKQVVEVACGSHHSMALAADGEVFAWGYN 155

Query: 237 KAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQL 296
              ++ S     +     +     ++   VV IACG   S+ +  NG +   G N  GQL
Sbjct: 156 NCGQVGSGSTANQPTPRKVTNCLHIK--RVVGIACGQTSSMAVLDNGEVYGWGYNGNGQL 213

Query: 297 GREKQDMGMFPVDI-NFHPVSIS---SGLGHSLAICEVRSSNVTGGARGIV-SWGWNRSS 351
           G       + PV +   H V ++    G  H+LA+ +           G++ +WG N   
Sbjct: 214 GLGNNGNQLTPVRVAALHSVCVNQIVCGYAHTLALTD----------EGLLYAWGANTYG 263

Query: 352 QLGRMGPDNV 361
           QLG    +N+
Sbjct: 264 QLGTGNKNNL 273


>gi|344281814|ref|XP_003412672.1| PREDICTED: RCC1 and BTB domain-containing protein 1 [Loxodonta
           africana]
          Length = 531

 Score = 89.0 bits (219), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 63/190 (33%), Positives = 98/190 (51%), Gaps = 12/190 (6%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPG--LPSDVTSVSAGHYHSLAVTNNGAVW 86
           V ++G      LG  T+  GV      P +V    L   V  V+ G +HS+A+  +G V+
Sbjct: 96  VYAWGHNGYSQLGNGTTNQGVA-----PIQVCTNLLIKQVVEVACGSHHSMALAADGEVF 150

Query: 87  AWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSS-AIGDDGSLWVWGK 145
           AWG NN  Q+G G+  ++ T   P++V     +      A G  SS A+ D+G ++ WG 
Sbjct: 151 AWGYNNCGQVGSGSTANQPT---PRKVTNCLHIKKVVGIACGQTSSMAVLDNGEVYGWGY 207

Query: 146 SKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIG 205
           +  GQLGLG +  + + P RV AL    + ++  G+ H LA T++G L+ WG +  G++G
Sbjct: 208 NGNGQLGLGNNGNQ-LTPVRVAALHSVCVNQIVCGYAHTLALTDEGLLYAWGANTYGQLG 266

Query: 206 NLGKALESSP 215
              K    SP
Sbjct: 267 TGNKNNLLSP 276



 Score = 74.3 bits (181), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 70/293 (23%), Positives = 116/293 (39%), Gaps = 67/293 (22%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLP-SDVTSVSAGHY-HSLAVTNNGAVW 86
           V  FG      LG     TG       P ++  L    + S+S G   H L  T +G V+
Sbjct: 43  VFVFGMNYSNCLG-----TGDNQSTLVPKKLEALCGKKIKSLSYGSAPHVLLSTEDGVVY 97

Query: 87  AWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVV---------SSAIGDD 137
           AWG N   QLG G              +G+  + VC       V         S A+  D
Sbjct: 98  AWGHNGYSQLGNGTTN-----------QGVAPIQVCTNLLIKQVVEVACGSHHSMALAAD 146

Query: 138 GSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWG 197
           G ++ WG +  GQ+G G    +         L  +K+V ++ G   ++A  ++G+++GWG
Sbjct: 147 GEVFAWGYNNCGQVGSGSTANQPTPRKVTNCLHIKKVVGIACGQTSSMAVLDNGEVYGWG 206

Query: 198 YSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWE 257
           Y+ +G++G      + +P+             +++                         
Sbjct: 207 YNGNGQLGLGNNGNQLTPV------------RVAA------------------------- 229

Query: 258 PFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDI 310
              +  V V  I CG+ H+L L   G+L + G+N YGQLG   ++  + P  +
Sbjct: 230 ---LHSVCVNQIVCGYAHTLALTDEGLLYAWGANTYGQLGTGNKNNLLSPAHV 279



 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 75/294 (25%), Positives = 127/294 (43%), Gaps = 62/294 (21%)

Query: 76  SLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAI- 134
           +L VT+N  V+ +G N    LG G  +S      PK++E L    +  + + G     + 
Sbjct: 34  ALYVTDNDEVFVFGMNYSNCLGTGDNQSTLV---PKKLEALCGKKI-KSLSYGSAPHVLL 89

Query: 135 -GDDGSLWVWGKSKRGQLGLGKDITEAIVPSRV-EALAGEKIVKVSFGWGHALAQTEDGK 192
             +DG ++ WG +   QLG G    + + P +V   L  +++V+V+ G  H++A   DG+
Sbjct: 90  STEDGVVYAWGHNGYSQLGNGT-TNQGVAPIQVCTNLLIKQVVEVACGSHHSMALAADGE 148

Query: 193 LFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYM 252
           +F WGY+  G++G+   A + +P                        + V+  +  +K  
Sbjct: 149 VFAWGYNNCGQVGSGSTANQPTP------------------------RKVTNCLHIKK-- 182

Query: 253 PIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDI-N 311
                        VV IACG   S+ +  NG +   G N  GQLG       + PV +  
Sbjct: 183 -------------VVGIACGQTSSMAVLDNGEVYGWGYNGNGQLGLGNNGNQLTPVRVAA 229

Query: 312 FHPVSIS---SGLGHSLAICEVRSSNVTGGARGIV-SWGWNRSSQLGRMGPDNV 361
            H V ++    G  H+LA+ +           G++ +WG N   QLG    +N+
Sbjct: 230 LHSVCVNQIVCGYAHTLALTD----------EGLLYAWGANTYGQLGTGNKNNL 273



 Score = 61.6 bits (148), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 63/240 (26%), Positives = 102/240 (42%), Gaps = 57/240 (23%)

Query: 122 CAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGW 181
           C    SG  +  + D+  ++V+G +    LG G D    +VP ++EAL G+KI  +S+G 
Sbjct: 25  CVFGTSGNEALYVTDNDEVFVFGMNYSNCLGTG-DNQSTLVPKKLEALCGKKIKSLSYGS 83

Query: 182 G-HALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQK 240
             H L  TEDG ++ WG++   ++GN                                  
Sbjct: 84  APHVLLSTEDGVVYAWGHNGYSQLGN---------------------------------- 109

Query: 241 LVSEGMEKEKYMPI-IWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGRE 299
               G   +   PI +    L++  +VV++ACG  HS+ L  +G + + G N  GQ+G  
Sbjct: 110 ----GTTNQGVAPIQVCTNLLIK--QVVEVACGSHHSMALAADGEVFAWGYNNCGQVGSG 163

Query: 300 KQDMGMFPVDIN--FH---PVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLG 354
                  P  +    H    V I+ G   S+A+  + +  V G       WG+N + QLG
Sbjct: 164 STANQPTPRKVTNCLHIKKVVGIACGQTSSMAV--LDNGEVYG-------WGYNGNGQLG 214


>gi|395859036|ref|XP_003801852.1| PREDICTED: RCC1 and BTB domain-containing protein 1 isoform 1
           [Otolemur garnettii]
          Length = 531

 Score = 89.0 bits (219), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 54/162 (33%), Positives = 88/162 (54%), Gaps = 5/162 (3%)

Query: 62  LPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNV 121
           L   V  V+ G +HS+A+  +G V+AWG NN  Q+G G+  ++ T   P++V     +  
Sbjct: 126 LIKQVVEVACGSHHSMALAADGEVFAWGYNNCGQVGSGSTANQPT---PRKVTNCLHIKR 182

Query: 122 CAAFASGVVSS-AIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFG 180
               A G  SS A+ D+G ++ WG +  GQLGLG +  + + P RV AL    + ++  G
Sbjct: 183 VVGIACGQTSSMAVLDNGEVYGWGYNGNGQLGLGNNGNQ-LTPVRVAALHSVCVNQIVCG 241

Query: 181 WGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDR 222
           + H LA T++G L+ WG +  G++G   K    SP    +++
Sbjct: 242 YAHTLALTDEGLLYAWGANTYGQLGTGNKNNLLSPAHIMVEK 283



 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 70/293 (23%), Positives = 116/293 (39%), Gaps = 67/293 (22%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLP-SDVTSVSAGH-YHSLAVTNNGAVW 86
           V  FG      LG     TG       P ++  L    + S+S G   H L  T +G V+
Sbjct: 43  VFVFGLNYSNCLG-----TGDNQSTLVPKKLEALCGKKIKSLSYGSGPHVLLSTEDGVVY 97

Query: 87  AWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVV---------SSAIGDD 137
           AWG N   QLG G              +G+  + VC       V         S A+  D
Sbjct: 98  AWGHNGYSQLGNGTTN-----------QGIAPIQVCTNLLIKQVVEVACGSHHSMALAAD 146

Query: 138 GSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWG 197
           G ++ WG +  GQ+G G    +         L  +++V ++ G   ++A  ++G+++GWG
Sbjct: 147 GEVFAWGYNNCGQVGSGSTANQPTPRKVTNCLHIKRVVGIACGQTSSMAVLDNGEVYGWG 206

Query: 198 YSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWE 257
           Y+ +G++G      + +P+             +++                         
Sbjct: 207 YNGNGQLGLGNNGNQLTPV------------RVAA------------------------- 229

Query: 258 PFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDI 310
              +  V V  I CG+ H+L L   G+L + G+N YGQLG   ++  + P  I
Sbjct: 230 ---LHSVCVNQIVCGYAHTLALTDEGLLYAWGANTYGQLGTGNKNNLLSPAHI 279



 Score = 65.9 bits (159), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 75/293 (25%), Positives = 128/293 (43%), Gaps = 60/293 (20%)

Query: 76  SLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCA-AFASGVVSSAI 134
           +L VT++  V+ +G N    LG G  +S      PK++E L    + + ++ SG      
Sbjct: 34  ALYVTDSDEVFVFGLNYSNCLGTGDNQSTLV---PKKLEALCGKKIKSLSYGSGPHVLLS 90

Query: 135 GDDGSLWVWGKSKRGQLGLGKDITEAIVPSRV-EALAGEKIVKVSFGWGHALAQTEDGKL 193
            +DG ++ WG +   QLG G    + I P +V   L  +++V+V+ G  H++A   DG++
Sbjct: 91  TEDGVVYAWGHNGYSQLGNGT-TNQGIAPIQVCTNLLIKQVVEVACGSHHSMALAADGEV 149

Query: 194 FGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMP 253
           F WGY+  G++G+   A + +P                        + V+  +  ++   
Sbjct: 150 FAWGYNNCGQVGSGSTANQPTP------------------------RKVTNCLHIKR--- 182

Query: 254 IIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDI-NF 312
                       VV IACG   S+ +  NG +   G N  GQLG       + PV +   
Sbjct: 183 ------------VVGIACGQTSSMAVLDNGEVYGWGYNGNGQLGLGNNGNQLTPVRVAAL 230

Query: 313 HPVSIS---SGLGHSLAICEVRSSNVTGGARGIV-SWGWNRSSQLGRMGPDNV 361
           H V ++    G  H+LA+ +           G++ +WG N   QLG    +N+
Sbjct: 231 HSVCVNQIVCGYAHTLALTD----------EGLLYAWGANTYGQLGTGNKNNL 273


>gi|440898467|gb|ELR49962.1| RCC1 and BTB domain-containing protein 1 [Bos grunniens mutus]
          Length = 531

 Score = 89.0 bits (219), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 54/162 (33%), Positives = 88/162 (54%), Gaps = 5/162 (3%)

Query: 62  LPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNV 121
           L   V  V+ G +HS+A+  +G V+AWG NN  Q+G G+  ++ T   P++V     +  
Sbjct: 126 LIKQVVEVACGSHHSMALAADGEVFAWGYNNCGQVGSGSTANQPT---PRKVTNCLHIKR 182

Query: 122 CAAFASGVVSS-AIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFG 180
               A G  SS A+ D+G ++ WG +  GQLGLG +  + + P RV AL    + ++  G
Sbjct: 183 VVGIACGQTSSMAVLDNGEVYGWGYNGNGQLGLGNNGNQ-LTPVRVAALHSVCVNQIVCG 241

Query: 181 WGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDR 222
           + H LA T++G L+ WG +  G++G   K    SP    +++
Sbjct: 242 YAHTLALTDEGLLYAWGANTYGQLGTGNKNNLLSPAHIMVEK 283



 Score = 75.1 bits (183), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 71/293 (24%), Positives = 116/293 (39%), Gaps = 67/293 (22%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLP-SDVTSVSAGH-YHSLAVTNNGAVW 86
           V  FG      LG     TG       P ++  L    + S+S G   H L  T +G V+
Sbjct: 43  VFVFGLNYSSCLG-----TGDNHSTLVPKKLEALCGKKIKSLSYGSGPHVLLSTEDGVVY 97

Query: 87  AWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVV---------SSAIGDD 137
           AWG N   QLG G              +GL  + VC       V         S A+  D
Sbjct: 98  AWGHNGYSQLGNGTTN-----------QGLAPIQVCTNLLIKQVVEVACGSHHSMALAAD 146

Query: 138 GSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWG 197
           G ++ WG +  GQ+G G    +         L  +++V ++ G   ++A  ++G+++GWG
Sbjct: 147 GEVFAWGYNNCGQVGSGSTANQPTPRKVTNCLHIKRVVGIACGQTSSMAVLDNGEVYGWG 206

Query: 198 YSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWE 257
           Y+ +G++G      + +P+             +++                         
Sbjct: 207 YNGNGQLGLGNNGNQLTPV------------RVAA------------------------- 229

Query: 258 PFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDI 310
              +  V V  I CG+ H+L L   G+L + G+N YGQLG   ++  + P  I
Sbjct: 230 ---LHSVCVNQIVCGYAHTLALTDEGLLYAWGANTYGQLGTGNKNNLLSPAHI 279



 Score = 64.7 bits (156), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 74/293 (25%), Positives = 127/293 (43%), Gaps = 60/293 (20%)

Query: 76  SLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCA-AFASGVVSSAI 134
           +L VT++  V+ +G N    LG G   S      PK++E L    + + ++ SG      
Sbjct: 34  ALYVTDSDEVFVFGLNYSSCLGTGDNHSTLV---PKKLEALCGKKIKSLSYGSGPHVLLS 90

Query: 135 GDDGSLWVWGKSKRGQLGLGKDITEAIVPSRV-EALAGEKIVKVSFGWGHALAQTEDGKL 193
            +DG ++ WG +   QLG G    + + P +V   L  +++V+V+ G  H++A   DG++
Sbjct: 91  TEDGVVYAWGHNGYSQLGNGT-TNQGLAPIQVCTNLLIKQVVEVACGSHHSMALAADGEV 149

Query: 194 FGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMP 253
           F WGY+  G++G+   A + +P                        + V+  +  ++   
Sbjct: 150 FAWGYNNCGQVGSGSTANQPTP------------------------RKVTNCLHIKR--- 182

Query: 254 IIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDI-NF 312
                       VV IACG   S+ +  NG +   G N  GQLG       + PV +   
Sbjct: 183 ------------VVGIACGQTSSMAVLDNGEVYGWGYNGNGQLGLGNNGNQLTPVRVAAL 230

Query: 313 HPVSIS---SGLGHSLAICEVRSSNVTGGARGIV-SWGWNRSSQLGRMGPDNV 361
           H V ++    G  H+LA+ +           G++ +WG N   QLG    +N+
Sbjct: 231 HSVCVNQIVCGYAHTLALTD----------EGLLYAWGANTYGQLGTGNKNNL 273


>gi|300794911|ref|NP_001178141.1| RCC1 and BTB domain-containing protein 1 [Bos taurus]
 gi|296481892|tpg|DAA24007.1| TPA: regulator of chromosome condensation (RCC1) and BTB (POZ)
           domain containing protein 1 [Bos taurus]
          Length = 531

 Score = 89.0 bits (219), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 54/162 (33%), Positives = 88/162 (54%), Gaps = 5/162 (3%)

Query: 62  LPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNV 121
           L   V  V+ G +HS+A+  +G V+AWG NN  Q+G G+  ++ T   P++V     +  
Sbjct: 126 LIKQVVEVACGSHHSMALAADGEVFAWGYNNCGQVGSGSTANQPT---PRKVTNCLHIKR 182

Query: 122 CAAFASGVVSS-AIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFG 180
               A G  SS A+ D+G ++ WG +  GQLGLG +  + + P RV AL    + ++  G
Sbjct: 183 VVGIACGQTSSMAVLDNGEVYGWGYNGNGQLGLGNNGNQ-LTPVRVAALHSVCVNQIVCG 241

Query: 181 WGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDR 222
           + H LA T++G L+ WG +  G++G   K    SP    +++
Sbjct: 242 YAHTLALTDEGLLYAWGANTYGQLGTGNKNNLLSPAHIMVEK 283



 Score = 75.1 bits (183), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 71/293 (24%), Positives = 116/293 (39%), Gaps = 67/293 (22%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLP-SDVTSVSAGH-YHSLAVTNNGAVW 86
           V  FG      LG     TG       P ++  L    + S+S G   H L  T +G V+
Sbjct: 43  VFVFGLNYSSCLG-----TGDNHSTLVPKKLEALCGKKIKSLSYGSGPHVLLSTEDGVVY 97

Query: 87  AWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVV---------SSAIGDD 137
           AWG N   QLG G              +GL  + VC       V         S A+  D
Sbjct: 98  AWGHNGYSQLGNGTTN-----------QGLAPIQVCTNLLIKQVVEVACGSHHSMALAAD 146

Query: 138 GSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWG 197
           G ++ WG +  GQ+G G    +         L  +++V ++ G   ++A  ++G+++GWG
Sbjct: 147 GEVFAWGYNNCGQVGSGSTANQPTPRKVTNCLHIKRVVGIACGQTSSMAVLDNGEVYGWG 206

Query: 198 YSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWE 257
           Y+ +G++G      + +P+             +++                         
Sbjct: 207 YNGNGQLGLGNNGNQLTPV------------RVAA------------------------- 229

Query: 258 PFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDI 310
              +  V V  I CG+ H+L L   G+L + G+N YGQLG   ++  + P  I
Sbjct: 230 ---LHSVCVNQIVCGYAHTLALTDEGLLYAWGANTYGQLGTGNKNNLLSPAHI 279



 Score = 64.7 bits (156), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 74/293 (25%), Positives = 127/293 (43%), Gaps = 60/293 (20%)

Query: 76  SLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCA-AFASGVVSSAI 134
           +L VT++  V+ +G N    LG G   S      PK++E L    + + ++ SG      
Sbjct: 34  ALYVTDSDEVFVFGLNYSSCLGTGDNHSTLV---PKKLEALCGKKIKSLSYGSGPHVLLS 90

Query: 135 GDDGSLWVWGKSKRGQLGLGKDITEAIVPSRV-EALAGEKIVKVSFGWGHALAQTEDGKL 193
            +DG ++ WG +   QLG G    + + P +V   L  +++V+V+ G  H++A   DG++
Sbjct: 91  TEDGVVYAWGHNGYSQLGNGT-TNQGLAPIQVCTNLLIKQVVEVACGSHHSMALAADGEV 149

Query: 194 FGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMP 253
           F WGY+  G++G+   A + +P                        + V+  +  ++   
Sbjct: 150 FAWGYNNCGQVGSGSTANQPTP------------------------RKVTNCLHIKR--- 182

Query: 254 IIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDI-NF 312
                       VV IACG   S+ +  NG +   G N  GQLG       + PV +   
Sbjct: 183 ------------VVGIACGQTSSMAVLDNGEVYGWGYNGNGQLGLGNNGNQLTPVRVAAL 230

Query: 313 HPVSIS---SGLGHSLAICEVRSSNVTGGARGIV-SWGWNRSSQLGRMGPDNV 361
           H V ++    G  H+LA+ +           G++ +WG N   QLG    +N+
Sbjct: 231 HSVCVNQIVCGYAHTLALTD----------EGLLYAWGANTYGQLGTGNKNNL 273


>gi|426236339|ref|XP_004012127.1| PREDICTED: RCC1 and BTB domain-containing protein 1 [Ovis aries]
          Length = 531

 Score = 89.0 bits (219), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 54/162 (33%), Positives = 88/162 (54%), Gaps = 5/162 (3%)

Query: 62  LPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNV 121
           L   V  V+ G +HS+A+  +G V+AWG NN  Q+G G+  ++ T   P++V     +  
Sbjct: 126 LIKQVVEVACGSHHSMALAADGEVFAWGYNNCGQVGSGSTANQPT---PRKVTNCLHIKR 182

Query: 122 CAAFASGVVSS-AIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFG 180
               A G  SS A+ D+G ++ WG +  GQLGLG +  + + P RV AL    + ++  G
Sbjct: 183 VVGIACGQTSSMAVLDNGEVYGWGYNGNGQLGLGNNGNQ-LTPVRVAALHSVCVNQIVCG 241

Query: 181 WGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDR 222
           + H LA T++G L+ WG +  G++G   K    SP    +++
Sbjct: 242 YAHTLALTDEGLLYAWGANTYGQLGTGNKNNLLSPAHIMVEK 283



 Score = 75.1 bits (183), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 71/293 (24%), Positives = 116/293 (39%), Gaps = 67/293 (22%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLP-SDVTSVSAGH-YHSLAVTNNGAVW 86
           V  FG      LG     TG       P ++  L    + S+S G   H L  T +G V+
Sbjct: 43  VFVFGLNYSNCLG-----TGDNQSTLVPKKLDALCGKKIKSLSYGSGPHVLLSTEDGVVY 97

Query: 87  AWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVV---------SSAIGDD 137
           AWG N   QLG G              +GL  + VC       V         S A+  D
Sbjct: 98  AWGHNGYSQLGNGTTN-----------QGLAPIQVCTNLLIKQVVEVACGSHHSMALAAD 146

Query: 138 GSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWG 197
           G ++ WG +  GQ+G G    +         L  +++V ++ G   ++A  ++G+++GWG
Sbjct: 147 GEVFAWGYNNCGQVGSGSTANQPTPRKVTNCLHIKRVVGIACGQTSSMAVLDNGEVYGWG 206

Query: 198 YSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWE 257
           Y+ +G++G      + +P+             +++                         
Sbjct: 207 YNGNGQLGLGNNGNQLTPV------------RVAA------------------------- 229

Query: 258 PFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDI 310
              +  V V  I CG+ H+L L   G+L + G+N YGQLG   ++  + P  I
Sbjct: 230 ---LHSVCVNQIVCGYAHTLALTDEGLLYAWGANTYGQLGTGNKNNLLSPAHI 279



 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 73/293 (24%), Positives = 128/293 (43%), Gaps = 60/293 (20%)

Query: 76  SLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCA-AFASGVVSSAI 134
           +L VT++  V+ +G N    LG G  +S      PK+++ L    + + ++ SG      
Sbjct: 34  ALYVTDSDEVFVFGLNYSNCLGTGDNQSTLV---PKKLDALCGKKIKSLSYGSGPHVLLS 90

Query: 135 GDDGSLWVWGKSKRGQLGLGKDITEAIVPSRV-EALAGEKIVKVSFGWGHALAQTEDGKL 193
            +DG ++ WG +   QLG G    + + P +V   L  +++V+V+ G  H++A   DG++
Sbjct: 91  TEDGVVYAWGHNGYSQLGNGT-TNQGLAPIQVCTNLLIKQVVEVACGSHHSMALAADGEV 149

Query: 194 FGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMP 253
           F WGY+  G++G+   A + +P                        + V+  +  ++   
Sbjct: 150 FAWGYNNCGQVGSGSTANQPTP------------------------RKVTNCLHIKR--- 182

Query: 254 IIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDI-NF 312
                       VV IACG   S+ +  NG +   G N  GQLG       + PV +   
Sbjct: 183 ------------VVGIACGQTSSMAVLDNGEVYGWGYNGNGQLGLGNNGNQLTPVRVAAL 230

Query: 313 HPVSIS---SGLGHSLAICEVRSSNVTGGARGIV-SWGWNRSSQLGRMGPDNV 361
           H V ++    G  H+LA+ +           G++ +WG N   QLG    +N+
Sbjct: 231 HSVCVNQIVCGYAHTLALTD----------EGLLYAWGANTYGQLGTGNKNNL 273


>gi|410988349|ref|XP_004000448.1| PREDICTED: X-linked retinitis pigmentosa GTPase regulator [Felis
           catus]
          Length = 993

 Score = 89.0 bits (219), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 84/294 (28%), Positives = 142/294 (48%), Gaps = 35/294 (11%)

Query: 27  TAVVS-------FGDGSQGALGLPTSLTGVGGDAYEPTRVPGL-PSDVTSVSAGHYHSLA 78
           TAVV+       FG  + G LGL     G      +PT V  L P  V   + G  H+L 
Sbjct: 47  TAVVTGNKKLYMFGSNNWGQLGL-----GSKSTVSKPTCVKALKPEKVKFAACGRNHTLV 101

Query: 79  VTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDG 138
            T  G V+A G NNE QLG G  E R T++         ++   +A ++   S+A+ +DG
Sbjct: 102 STEGGKVYAAGGNNEGQLGLGDTEERNTFHLISFFTSQHKIKQLSAGSN--TSAALTEDG 159

Query: 139 SLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGY 198
            L++WG +  GQ+GL KD+T   VP +V    G+ I  +S G+ H+   T +G+L+ +G 
Sbjct: 160 ELFMWGDNSEGQIGL-KDVTNVCVPQQV--TVGKPISWISCGYYHSAFVTTEGELYTFGE 216

Query: 199 SADGRIGNLGKALESSPLDSNIDRSSESDQEISS---STIEKAQKLV-SEGMEK------ 248
              G++G   + L +  +   +    E   +++     T+   +K V + G+ +      
Sbjct: 217 PESGKLGLPNQLLCNHRMPQPVPGIPEKVVQVACGGGHTVVLTEKAVYTFGLGQFGQLGL 276

Query: 249 -----EKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLG 297
                E  +P + E   V+  ++  I+CG +H+ ++   G++ + G   YG+LG
Sbjct: 277 GTFLFETSVPKVIE--HVKDQKISSISCGENHTALITDIGLMYTFGDGRYGKLG 328



 Score = 68.6 bits (166), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 58/184 (31%), Positives = 94/184 (51%), Gaps = 18/184 (9%)

Query: 33  GDGSQGALGLPTSLTGVGGDAYEPTRVP-GLPSDVTSVSAGHYHSLAVTNNGAVWAWGRN 91
           GD S+G +GL   +T V      P +V  G P  ++ +S G+YHS  VT  G ++ +G  
Sbjct: 165 GDNSEGQIGL-KDVTNVCV----PQQVTVGKP--ISWISCGYYHSAFVTTEGELYTFG-- 215

Query: 92  NEVQLGRGALESRATWND--PKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRG 149
            E + G+  L ++   N   P+ V G+ +  V  A   G   + +  + +++ +G  + G
Sbjct: 216 -EPESGKLGLPNQLLCNHRMPQPVPGIPEKVVQVACGGG--HTVVLTEKAVYTFGLGQFG 272

Query: 150 QLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGK 209
           QLGLG  + E  VP  +E +  +KI  +S G  H    T+ G ++ +G   DGR G LG 
Sbjct: 273 QLGLGTFLFETSVPKVIEHVKDQKISSISCGENHTALITDIGLMYTFG---DGRYGKLGL 329

Query: 210 ALES 213
            LE+
Sbjct: 330 GLEN 333



 Score = 65.5 bits (158), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 82/316 (25%), Positives = 134/316 (42%), Gaps = 69/316 (21%)

Query: 67  TSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGL--DQVNVCAA 124
           T +S G  H+  VT N  ++ +G NN  QLG G   S++T + P  V+ L  ++V   A 
Sbjct: 38  TVLSCGDEHTAVVTGNKKLYMFGSNNWGQLGLG---SKSTVSKPTCVKALKPEKVKFAAC 94

Query: 125 FASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGE-KIVKVSFGWGH 183
             +  + S  G  G ++  G +  GQLGLG D  E      +     + KI ++S G   
Sbjct: 95  GRNHTLVSTEG--GKVYAAGGNNEGQLGLG-DTEERNTFHLISFFTSQHKIKQLSAGSNT 151

Query: 184 ALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVS 243
           + A TEDG+LF WG +++G+IG                        +   T     + V+
Sbjct: 152 SAALTEDGELFMWGDNSEGQIG------------------------LKDVTNVCVPQQVT 187

Query: 244 EGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDM 303
            G       PI W            I+CG+ HS  +   G L + G    G+LG   Q +
Sbjct: 188 VG------KPISW------------ISCGYYHSAFVTTEGELYTFGEPESGKLGLPNQLL 229

Query: 304 --GMFPVDINFHP---VSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGR--- 355
                P  +   P   V ++ G GH++ + E          + + ++G  +  QLG    
Sbjct: 230 CNHRMPQPVPGIPEKVVQVACGGGHTVVLTE----------KAVYTFGLGQFGQLGLGTF 279

Query: 356 MGPDNVPLVVEGLEGE 371
           +   +VP V+E ++ +
Sbjct: 280 LFETSVPKVIEHVKDQ 295



 Score = 55.1 bits (131), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 39/137 (28%), Positives = 66/137 (48%), Gaps = 7/137 (5%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAW 88
           + +FG+   G LGLP  L     +   P  VPG+P  V  V+ G  H++ +T   AV+ +
Sbjct: 211 LYTFGEPESGKLGLPNQLL---CNHRMPQPVPGIPEKVVQVACGGGHTVVLTEK-AVYTF 266

Query: 89  GRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKR 148
           G     QLG G      +   PK +E +    + +       ++ I D G ++ +G  + 
Sbjct: 267 GLGQFGQLGLGTFLFETSV--PKVIEHVKDQKISSISCGENHTALITDIGLMYTFGDGRY 324

Query: 149 GQLGLG-KDITEAIVPS 164
           G+LGLG ++ T   +P+
Sbjct: 325 GKLGLGLENFTNQFLPT 341


>gi|116331201|ref|YP_800919.1| RCC1 domain-containing protein [Leptospira borgpetersenii serovar
           Hardjo-bovis str. JB197]
 gi|116124890|gb|ABJ76161.1| RCC1 domain-containing protein [Leptospira borgpetersenii serovar
           Hardjo-bovis str. JB197]
          Length = 506

 Score = 89.0 bits (219), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 86/298 (28%), Positives = 146/298 (48%), Gaps = 34/298 (11%)

Query: 29  VVSFGDGSQGALGLPTSLTG-----VGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNG 83
           V ++G+ ++G LG+  + T        G+   PT VPG+ +D    + G  H+L + ++G
Sbjct: 199 VYTWGNNAKGQLGIGNNNTNPANPRAAGNRQPPTLVPGI-NDAVMGAYGFNHALILKSDG 257

Query: 84  AVWAWGRNNEVQLGRGA--LESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLW 141
            V A+G+NN  QLG GA  L + +   +P  V GL   +V    A    S+A+ + G ++
Sbjct: 258 TVVAFGQNNVGQLGNGANDLNADSFSMNPVAVVGLS--DVIQVIAGSEHSAALTESGEVY 315

Query: 142 VWGKSKRGQLGLGK-DITEAI--VPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGY 198
           VWG+++ G LG G+     AI   P +VE L+G  I +++ G  H LA   DG+++ WG 
Sbjct: 316 VWGRNQYGNLGNGRLSAANAIQSTPVKVEGLSG--IKQIANGRDHILALASDGRIYSWGL 373

Query: 199 SADGRIGNLGK-ALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEK--------- 248
           +A G++G  G  +   +P  + +   + +    +  T  ++  ++  G  K         
Sbjct: 374 NASGQLGIGGNGSPNPTPNPTQVLNITNASSIWAGGT--QSFSILKNGEVKGWGANGNTA 431

Query: 249 -----EKYMPIIWEPF-LVEGVE-VVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGRE 299
                E     ++EP   V G++ V+   CG  H+  L  NG +   G N  G LGR+
Sbjct: 432 NLAIGETNTLKVYEPNKAVVGIDNVIHFGCGATHNFALLGNGEIYGWGWNFKGSLGRQ 489



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 77/263 (29%), Positives = 113/263 (42%), Gaps = 43/263 (16%)

Query: 67  TSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFA 126
           T +SAG  HS     NG V+  GRNN  QLG G   S    N+   V+     N+ +   
Sbjct: 129 TKLSAGGAHS-GFLKNGEVYTVGRNNFGQLGTG--NSTGDENNDVIVKLNSISNIFSIHF 185

Query: 127 SGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITE-------------AIVPSRVEALAGEK 173
           +   S AI  +G ++ WG + +GQLG+G + T               +VP   +A+ G  
Sbjct: 186 NQNNSMAITKNGRVYTWGNNAKGQLGIGNNNTNPANPRAAGNRQPPTLVPGINDAVMG-- 243

Query: 174 IVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSN---IDRSSESDQEI 230
               ++G+ HAL    DG +  +G +  G++GN    L +     N   +   S+  Q I
Sbjct: 244 ----AYGFNHALILKSDGTVVAFGQNNVGQLGNGANDLNADSFSMNPVAVVGLSDVIQVI 299

Query: 231 SSSTIEKAQKLVSEGME----KEKY-----------MPIIWEPFLVEGVE-VVDIACGFD 274
           + S  E +  L   G      + +Y             I   P  VEG+  +  IA G D
Sbjct: 300 AGS--EHSAALTESGEVYVWGRNQYGNLGNGRLSAANAIQSTPVKVEGLSGIKQIANGRD 357

Query: 275 HSLVLGRNGVLLSCGSNVYGQLG 297
           H L L  +G + S G N  GQLG
Sbjct: 358 HILALASDGRIYSWGLNASGQLG 380



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 62/262 (23%), Positives = 108/262 (41%), Gaps = 60/262 (22%)

Query: 125 FASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHA 184
            ++G   S    +G ++  G++  GQLG G    +      V+  +   I  + F   ++
Sbjct: 131 LSAGGAHSGFLKNGEVYTVGRNNFGQLGTGNSTGDENNDVIVKLNSISNIFSIHFNQNNS 190

Query: 185 LAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSE 244
           +A T++G+++ WG +A G++G                        I ++    A    + 
Sbjct: 191 MAITKNGRVYTWGNNAKGQLG------------------------IGNNNTNPANPRAAG 226

Query: 245 GMEKEKYMPIIWEPFLVEGV-EVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDM 303
             +          P LV G+ + V  A GF+H+L+L  +G +++ G N  GQLG    D+
Sbjct: 227 NRQP---------PTLVPGINDAVMGAYGFNHALILKSDGTVVAFGQNNVGQLGNGANDL 277

Query: 304 GMFPVDINFHPVSIS---------SGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQL- 353
                 +N  PV++          +G  HS A+ E         +  +  WG N+   L 
Sbjct: 278 NADSFSMN--PVAVVGLSDVIQVIAGSEHSAALTE---------SGEVYVWGRNQYGNLG 326

Query: 354 -GRMGPDN----VPLVVEGLEG 370
            GR+   N     P+ VEGL G
Sbjct: 327 NGRLSAANAIQSTPVKVEGLSG 348


>gi|312381821|gb|EFR27472.1| hypothetical protein AND_05798 [Anopheles darlingi]
          Length = 5197

 Score = 89.0 bits (219), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 97/364 (26%), Positives = 153/364 (42%), Gaps = 72/364 (19%)

Query: 19   IFMRSASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVT---SVSAGHYH 75
            +F+ S  G  + + G+G+ G LGL     G   +   P +VP L   V    +V +G  H
Sbjct: 3286 LFIVSQDG-KLYACGEGTNGRLGL-----GHNNNVPTPKQVPILSQYVVKKVAVHSGGKH 3339

Query: 76   SLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIG 135
            ++A+T +G V++WG   + +LG G   +R T   PK +E L    +         S+AI 
Sbjct: 3340 AMALTLDGKVFSWGEGEDGKLGHG---NRLTLEKPKLIETLRTKRIRDIACGSSHSAAIT 3396

Query: 136  DDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGW--GHALAQTEDGKL 193
              G L+ WG  + G+LG G + T+ + P  V ALA  ++V+V+ G      L  TE+G +
Sbjct: 3397 SSGELYTWGLGEYGRLGHGDNCTQ-LKPKLVTALADHRVVQVACGSRDAQTLCLTEEGLV 3455

Query: 194  FGWGYSADGRIGNLGK-ALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYM 252
            F WG   DG  G LG+   E   +   ++R                              
Sbjct: 3456 FSWG---DGDFGKLGRGGSEGCSIPHQVER------------------------------ 3482

Query: 253  PIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDIN- 311
                    + GV V+ I CG   SL L ++G + + G   Y +LG         P  I  
Sbjct: 3483 --------LNGVGVMQIECGAQFSLALTKSGEVWTWGKGDYYRLGHGTDQHVRKPTPIQG 3534

Query: 312  ---FHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGP--DNVPLVVE 366
                  + ++ G  H LA+ +         +  + +WG N   Q G      +  P +V 
Sbjct: 3535 LRGKKVIHVAVGALHCLAVTD---------SGQVYAWGDNDHGQQGSGNTIVNKKPSLVL 3585

Query: 367  GLEG 370
            GL+G
Sbjct: 3586 GLDG 3589



 Score = 82.0 bits (201), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 89/342 (26%), Positives = 141/342 (41%), Gaps = 56/342 (16%)

Query: 52  DAYEPTRVPGLPSDVTSVSAGHY---HSLAVTNNGAVWAWGRNNEVQLGRGALESRATWN 108
           D   P  + GL S      A H    H LA+T  G V++WG     +LG G   S+   +
Sbjct: 615 DTTAPKPIEGLESVNIVQLAAHCEGRHVLALTATGDVFSWGNGEGGRLGHGDTSSK---D 671

Query: 109 DPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEA 168
            P R+  L +  V   F     S+AI   G L+ WG+   G+LG G    +  +P+ V+ 
Sbjct: 672 IPTRIVALAERQVTGVFCGSSYSAAITAAGELYTWGRGTYGRLGHGNS-EDKHLPTIVQV 730

Query: 169 LAGEKIVKVSFGWG--HALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSES 226
           L  ++++ V+ G G  H+L  T+ G ++ WG    G++GN      S P+   + + S+ 
Sbjct: 731 LKQQRVIHVALGCGDAHSLCVTDTGIVYAWGDGDFGKLGNGTCNGSSVPVAIELPQCSDG 790

Query: 227 DQEISSST-------------------IEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVV 267
             ++ S +                     +     SE     K +  +      EG  +V
Sbjct: 791 AVKVFSGSHFSVALGRDGTVYSWGKGHGGRLGHGHSEHTASPKAIQAL------EGKNIV 844

Query: 268 DIACGFDHSLVLGRNGVLLSCGSNVYGQLGR---EKQDMGMFPVDINFHPVSISSGLGHS 324
           D+A G  H L L  +G L   G N + QL      +  + + P+ +   P    +G+   
Sbjct: 845 DLAVGLAHCLALTASGELYGWGRNDFQQLCPPCVTRDPIVLLPI-LTTPPTLRIAGMA-- 901

Query: 325 LAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPDNVPLVVE 366
                       GGA+ IV   W  SS LG   P  +P VV+
Sbjct: 902 -----------AGGAQSIV---WCHSSTLGI--PVKIPFVVD 927



 Score = 81.3 bits (199), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 83/312 (26%), Positives = 139/312 (44%), Gaps = 61/312 (19%)

Query: 68   SVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFAS 127
            +V++G  H LA++++G V++WG   + +LG G   +R +++ PK +E L  + V      
Sbjct: 4468 AVNSGGKHCLALSSDGEVFSWGEGEDGKLGHG---NRDSYDRPKLIEALSGIGVIDIACG 4524

Query: 128  GVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHA--L 185
               S+ I   G +  WGK + G+LG G D  + + P  VEAL G + + ++ G G A  L
Sbjct: 4525 SAHSACITSQGHVLTWGKGRYGRLGHG-DSEDQLQPKLVEALLGYRAIDIACGSGDAQTL 4583

Query: 186  AQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEG 245
              T+D  ++ WG   DG  G LG+                                 S+G
Sbjct: 4584 CITDDDNVWSWG---DGDYGKLGRG-------------------------------GSDG 4609

Query: 246  MEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGM 305
             +    +P+  E   + G+ V  + CG   S+ L R+G + + G   Y +LG    D   
Sbjct: 4610 CK----VPMKIES--LAGLGVTKVECGSQFSVALTRSGSVYTWGKGDYHRLGHGNTDHVR 4663

Query: 306  FPVDINF----HPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQL--GRMGPD 359
             P  +        +SI++G  H +A  +       GG   + +WG N   QL  G +   
Sbjct: 4664 RPKKVAALQGKKIISIATGSLHCVACSD-------GGE--VFTWGDNDEGQLGDGTVSAI 4714

Query: 360  NVPLVVEGLEGE 371
              P +V+ L+G+
Sbjct: 4715 QRPRLVQSLQGK 4726



 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 53/182 (29%), Positives = 91/182 (50%), Gaps = 14/182 (7%)

Query: 29   VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGL----PSDVTSVSAGHYHSLAVTNNGA 84
            V+++G G  G LG      G   D  +P  V  L      D+ +  +G   +L +T++  
Sbjct: 4537 VLTWGKGRYGRLG-----HGDSEDQLQPKLVEALLGYRAIDI-ACGSGDAQTLCITDDDN 4590

Query: 85   VWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWG 144
            VW+WG  +  +LGRG  +       P ++E L  + V         S A+   GS++ WG
Sbjct: 4591 VWSWGDGDYGKLGRGGSDGCKV---PMKIESLAGLGVTKVECGSQFSVALTRSGSVYTWG 4647

Query: 145  KSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRI 204
            K    +LG G +      P +V AL G+KI+ ++ G  H +A ++ G++F WG + +G++
Sbjct: 4648 KGDYHRLGHG-NTDHVRRPKKVAALQGKKIISIATGSLHCVACSDGGEVFTWGDNDEGQL 4706

Query: 205  GN 206
            G+
Sbjct: 4707 GD 4708



 Score = 65.1 bits (157), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 50/157 (31%), Positives = 74/157 (47%), Gaps = 10/157 (6%)

Query: 31   SFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPS-DVTSVSAGHYHSLAVTNNGAVWAWG 89
            S+GDG  G LG      G       P ++  L    VT V  G   S+A+T +G+V+ WG
Sbjct: 4593 SWGDGDYGKLG-----RGGSDGCKVPMKIESLAGLGVTKVECGSQFSVALTRSGSVYTWG 4647

Query: 90   RNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRG 149
            + +  +LG G  +       PK+V  L    + +     +   A  D G ++ WG +  G
Sbjct: 4648 KGDYHRLGHGNTDH---VRRPKKVAALQGKKIISIATGSLHCVACSDGGEVFTWGDNDEG 4704

Query: 150  QLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALA 186
            QLG G  ++    P  V++L G+ IVKV  G  H LA
Sbjct: 4705 QLGDGT-VSAIQRPRLVQSLQGKHIVKVICGSAHTLA 4740



 Score = 64.7 bits (156), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 82/299 (27%), Positives = 122/299 (40%), Gaps = 67/299 (22%)

Query: 84   AVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVW 143
             ++ WG N+  QLG G   SR     P   E L  +             A+  DG L+  
Sbjct: 4378 TIFGWGHNHRGQLG-GLDGSRIKM--PTPCEALSLLRPIQIAGGEQTLYAVTPDGKLYAT 4434

Query: 144  GKSKRGQLGLGKDITEAIV-PSRVEALAGEKIVKVSFGWG--HALAQTEDGKLFGWGYSA 200
            G    G+LG+G   T+++  P+ VE+L    I KV+   G  H LA + DG++F WG   
Sbjct: 4435 GYGAGGRLGIGG--TDSVTTPTLVESLQHVMIKKVAVNSGGKHCLALSSDGEVFSWGEGE 4492

Query: 201  DGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFL 260
            DG++G+  +         + DR                                   P L
Sbjct: 4493 DGKLGHGNR--------DSYDR-----------------------------------PKL 4509

Query: 261  VE---GVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDIN----FH 313
            +E   G+ V+DIACG  HS  +   G +L+ G   YG+LG    +  + P  +     + 
Sbjct: 4510 IEALSGIGVIDIACGSAHSACITSQGHVLTWGKGRYGRLGHGDSEDQLQPKLVEALLGYR 4569

Query: 314  PVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPD--NVPLVVEGLEG 370
             + I+ G G +  +C     NV        SWG     +LGR G D   VP+ +E L G
Sbjct: 4570 AIDIACGSGDAQTLCITDDDNVW-------SWGDGDYGKLGRGGSDGCKVPMKIESLAG 4621



 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 81/307 (26%), Positives = 134/307 (43%), Gaps = 31/307 (10%)

Query: 85   VWAWGRNNEVQLG--RGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWV 142
            V  WG N++ QLG  +G+     T++    +  L  +++     S  +   +  DG L+ 
Sbjct: 3243 VLVWGLNDKEQLGGLKGSKVKLPTYS--SVLSQLKPIHIAGGSKSLFI---VSQDGKLYA 3297

Query: 143  WGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWG--HALAQTEDGKLFGWGYSA 200
             G+   G+LGLG +      P +V  L+   + KV+   G  HA+A T DGK+F WG   
Sbjct: 3298 CGEGTNGRLGLGHN-NNVPTPKQVPILSQYVVKKVAVHSGGKHAMALTLDGKVFSWGEGE 3356

Query: 201  DGRIGNLGK-ALESSPLDSNIDRSSESDQEISSS---TIEKAQKLVSEGMEKEKYM---- 252
            DG++G+  +  LE   L   +      D    SS    I  + +L + G+ +   +    
Sbjct: 3357 DGKLGHGNRLTLEKPKLIETLRTKRIRDIACGSSHSAAITSSGELYTWGLGEYGRLGHGD 3416

Query: 253  -PIIWEPFLVEGV---EVVDIACGFD--HSLVLGRNGVLLSCGSNVYGQLGREKQDMGMF 306
                 +P LV  +    VV +ACG     +L L   G++ S G   +G+LGR   +    
Sbjct: 3417 NCTQLKPKLVTALADHRVVQVACGSRDAQTLCLTEEGLVFSWGDGDFGKLGRGGSEGCSI 3476

Query: 307  PVDINFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPDNV--PLV 364
            P     H V   +G+G     C  + S     +  + +WG     +LG     +V  P  
Sbjct: 3477 P-----HQVERLNGVGVMQIECGAQFSLALTKSGEVWTWGKGDYYRLGHGTDQHVRKPTP 3531

Query: 365  VEGLEGE 371
            ++GL G+
Sbjct: 3532 IQGLRGK 3538



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 59/174 (33%), Positives = 86/174 (49%), Gaps = 15/174 (8%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVT---SVSAGHYHSLAVTNNGAV 85
           + ++G G+ G LG      G   D + PT V  L        ++  G  HSL VT+ G V
Sbjct: 703 LYTWGRGTYGRLG-----HGNSEDKHLPTIVQVLKQQRVIHVALGCGDAHSLCVTDTGIV 757

Query: 86  WAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVN--VCAAFASGVVSSAIGDDGSLWVW 143
           +AWG  +  +LG G     +    P  +E L Q +      F+    S A+G DG+++ W
Sbjct: 758 YAWGDGDFGKLGNGTCNGSSV---PVAIE-LPQCSDGAVKVFSGSHFSVALGRDGTVYSW 813

Query: 144 GKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWG 197
           GK   G+LG G     A  P  ++AL G+ IV ++ G  H LA T  G+L+GWG
Sbjct: 814 GKGHGGRLGHGHSEHTA-SPKAIQALEGKNIVDLAVGLAHCLALTASGELYGWG 866



 Score = 61.6 bits (148), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 79/310 (25%), Positives = 127/310 (40%), Gaps = 57/310 (18%)

Query: 69   VSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNV--CAAFA 126
            ++ G     AVT +G ++A G     +LG G  +S  T   P  VE L  V +   A  +
Sbjct: 4415 IAGGEQTLYAVTPDGKLYATGYGAGGRLGIGGTDSVTT---PTLVESLQHVMIKKVAVNS 4471

Query: 127  SGVVSSAIGDDGSLWVWGKSKRGQLGLG-KDITEAIVPSRVEALAGEKIVKVSFGWGHAL 185
             G    A+  DG ++ WG+ + G+LG G +D  +   P  +EAL+G  ++ ++ G  H+ 
Sbjct: 4472 GGKHCLALSSDGEVFSWGEGEDGKLGHGNRDSYDR--PKLIEALSGIGVIDIACGSAHSA 4529

Query: 186  AQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEG 245
              T  G +  WG    GR+G+                                      G
Sbjct: 4530 CITSQGHVLTWGKGRYGRLGH--------------------------------------G 4551

Query: 246  MEKEKYMPIIWEPFLVEGVEVVDIACGF--DHSLVLGRNGVLLSCGSNVYGQLGREKQDM 303
              +++  P + E  L  G   +DIACG     +L +  +  + S G   YG+LGR   D 
Sbjct: 4552 DSEDQLQPKLVEALL--GYRAIDIACGSGDAQTLCITDDDNVWSWGDGDYGKLGRGGSDG 4609

Query: 304  GMFPVDINFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPDNV-- 361
               P+ I        +GLG +   C  + S     +  + +WG     +LG    D+V  
Sbjct: 4610 CKVPMKIES-----LAGLGVTKVECGSQFSVALTRSGSVYTWGKGDYHRLGHGNTDHVRR 4664

Query: 362  PLVVEGLEGE 371
            P  V  L+G+
Sbjct: 4665 PKKVAALQGK 4674



 Score = 40.0 bits (92), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 56/238 (23%), Positives = 91/238 (38%), Gaps = 46/238 (19%)

Query: 135  GDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLF 194
            G   +++ WG + RGQLG G D +   +P+  EAL+  + ++++ G     A T DGKL+
Sbjct: 4374 GGASTIFGWGHNHRGQLG-GLDGSRIKMPTPCEALSLLRPIQIAGGEQTLYAVTPDGKLY 4432

Query: 195  GWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPI 254
              GY A                         +D   + + +E  Q ++            
Sbjct: 4433 ATGYGA-----------------GGRLGIGGTDSVTTPTLVESLQHVM------------ 4463

Query: 255  IWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFHP 314
                     ++ V +  G  H L L  +G + S G    G+LG   +D    P  I    
Sbjct: 4464 ---------IKKVAVNSGGKHCLALSSDGEVFSWGEGEDGKLGHGNRDSYDRPKLIE--- 4511

Query: 315  VSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPDN--VPLVVEGLEG 370
                SG+G     C    S        +++WG  R  +LG    ++   P +VE L G
Sbjct: 4512 --ALSGIGVIDIACGSAHSACITSQGHVLTWGKGRYGRLGHGDSEDQLQPKLVEALLG 4567


>gi|291407336|ref|XP_002719873.1| PREDICTED: retinitis pigmentosa GTPase regulator-like [Oryctolagus
           cuniculus]
          Length = 882

 Score = 89.0 bits (219), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 94/322 (29%), Positives = 146/322 (45%), Gaps = 73/322 (22%)

Query: 27  TAVVS-------FGDGSQGALGLPTSLTGVGGDAYEPTRVPGL-PSDVTSVSAGHYHSLA 78
           TAVV+       FG  + G LGL +  T       +PT V  L P  V  V+ G  H+L 
Sbjct: 47  TAVVTGNNKLYMFGSNNWGQLGLGSKTT-----INKPTCVKALKPEKVKYVACGRNHTLV 101

Query: 79  VTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDG 138
            T  G V+A G NN+ QLG G  E R T+          ++   +A ++   S+A+ ++G
Sbjct: 102 STEEGNVYATGGNNDGQLGLGDTEGRNTFYPISFFTSQHKIKQLSAGSN--TSAALTENG 159

Query: 139 SLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGY 198
            L++WG +  GQ+GL K++T   VP +V    G+ I  +S G+ H+   T DG+L+ +G 
Sbjct: 160 ELFMWGDNSEGQIGL-KNVTNVCVPHQV--TIGKPISWISCGYYHSAFVTMDGELYTFGE 216

Query: 199 SADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEP 258
             +G++G         P +  I+               K  +LV+   EK          
Sbjct: 217 CENGKLG--------LPEELLINH--------------KTPQLVTRIPEK---------- 244

Query: 259 FLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMF------PVDINF 312
                  V+ +ACG  H++VL    ++ + G   +GQLG     +G F      P  I +
Sbjct: 245 -------VIQVACGGGHTVVLTET-IVYTFGLGQFGQLG-----LGTFIFETSEPKAIEY 291

Query: 313 ---HPV-SISSGLGHSLAICEV 330
              H + SIS G  H+  I E+
Sbjct: 292 IKDHKISSISCGENHTALITEL 313



 Score = 65.9 bits (159), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 60/185 (32%), Positives = 93/185 (50%), Gaps = 20/185 (10%)

Query: 33  GDGSQGALGLPTSLTGVGGDAYEPTRVP-GLPSDVTSVSAGHYHSLAVTNNGAVWAWGR- 90
           GD S+G +GL  ++T V      P +V  G P  ++ +S G+YHS  VT +G ++ +G  
Sbjct: 165 GDNSEGQIGL-KNVTNVCV----PHQVTIGKP--ISWISCGYYHSAFVTMDGELYTFGEC 217

Query: 91  -NNEVQLGRGALESRATWNDPKRV-EGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKR 148
            N ++ L    L +  T     R+ E + QV  C    + V++  I     ++ +G  + 
Sbjct: 218 ENGKLGLPEELLINHKTPQLVTRIPEKVIQV-ACGGGHTVVLTETI-----VYTFGLGQF 271

Query: 149 GQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLG 208
           GQLGLG  I E   P  +E +   KI  +S G  H    TE G+++ +G   DGR G LG
Sbjct: 272 GQLGLGTFIFETSEPKAIEYIKDHKISSISCGENHTALITELGRMYTFG---DGRYGKLG 328

Query: 209 KALES 213
             LE+
Sbjct: 329 LGLEN 333


>gi|195441394|ref|XP_002068495.1| GK20388 [Drosophila willistoni]
 gi|194164580|gb|EDW79481.1| GK20388 [Drosophila willistoni]
          Length = 1054

 Score = 89.0 bits (219), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 73/287 (25%), Positives = 123/287 (42%), Gaps = 54/287 (18%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYE----PTRVPGLP-SDVTSVSAGHYHSLAVTNNG 83
           +  +G+ S G LG+       GG   E    P+++P  P + +  ++ GH H+L +T NG
Sbjct: 3   LFCWGNASHGQLGM-------GGIEDEQILIPSQIPWKPDAPLRQIACGHRHTLFLTANG 55

Query: 84  AVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVW 143
            V+A G N++ QLG      R     P  +  L    V A       S A+ + G +  W
Sbjct: 56  KVYACGNNDQAQLGHNLPTKR-----PLLIPELQNYVVVAIACGSRHSMALTEWGQVLSW 110

Query: 144 GKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGR 203
           G +  GQLG   D +   +P  + +L  + +V+++ G  H+LA T  G+L+ WG +  G+
Sbjct: 111 GDNDCGQLGQSTDQSIIELPKIIRSLVSKHVVQIACGNNHSLALTSCGELYSWGSNIYGQ 170

Query: 204 IGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEG 263
           +G                   +  QE+S                     P+     L  G
Sbjct: 171 LG------------------VKPPQELSHCN-----------------YPLRLTTLL--G 193

Query: 264 VEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDI 310
           + +  IACG +HS ++ ++  +   G N  GQLG   +    +P  +
Sbjct: 194 IPLATIACGGNHSFLISKSSAVFGFGRNNCGQLGLNDESNRAYPTQL 240



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 57/210 (27%), Positives = 102/210 (48%), Gaps = 12/210 (5%)

Query: 2   RLLKSVVHNHVNVLT--SRIFMRSASGTAVVSFGDGSQGALGL--PTSLTGVGGDAYEPT 57
           ++++S+V  HV  +   +   +   S   + S+G    G LG+  P  L+         T
Sbjct: 131 KIIRSLVSKHVVQIACGNNHSLALTSCGELYSWGSNIYGQLGVKPPQELSHCNY-PLRLT 189

Query: 58  RVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLD 117
            + G+P  + +++ G  HS  ++ + AV+ +GRNN  QLG     +RA    P +++ L 
Sbjct: 190 TLLGIP--LATIACGGNHSFLISKSSAVFGFGRNNCGQLGLNDESNRAY---PTQLKTLR 244

Query: 118 QVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKV 177
            + V         S  + ++G ++  G    GQLG G +  E ++P  V  L G  I +V
Sbjct: 245 TLGVRFVACGDEFSVFLTNEGGVFTCGAGTYGQLGHGSNTNE-MLPRMVMELMGSTITQV 303

Query: 178 SFGWGHALAQTED-GKLFGWGYSADGRIGN 206
           + G  H LA     G+++G+G  + G++GN
Sbjct: 304 ACGNRHTLALVPSRGRVYGFGLGSSGQLGN 333



 Score = 62.4 bits (150), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 64/230 (27%), Positives = 105/230 (45%), Gaps = 20/230 (8%)

Query: 140 LWVWGKSKRGQLGLGKDITEAI-VPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGY 198
           L+ WG +  GQLG+G    E I +PS++       + +++ G  H L  T +GK++  G 
Sbjct: 3   LFCWGNASHGQLGMGGIEDEQILIPSQIPWKPDAPLRQIACGHRHTLFLTANGKVYACGN 62

Query: 199 SADGRIGN---LGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLV-----SEGMEKEK 250
           +   ++G+     + L    L + +  +       S +  E  Q L         + +  
Sbjct: 63  NDQAQLGHNLPTKRPLLIPELQNYVVVAIACGSRHSMALTEWGQVLSWGDNDCGQLGQST 122

Query: 251 YMPIIWEPFLVEGV---EVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLG-REKQDMGMF 306
              II  P ++  +    VV IACG +HSL L   G L S GSN+YGQLG +  Q++   
Sbjct: 123 DQSIIELPKIIRSLVSKHVVQIACGNNHSLALTSCGELYSWGSNIYGQLGVKPPQELS-- 180

Query: 307 PVDINFHPVSISSGLGHSLAI--CEVRSSNVTGGARGIVSWGWNRSSQLG 354
               N+ P+ +++ LG  LA   C    S +   +  +  +G N   QLG
Sbjct: 181 --HCNY-PLRLTTLLGIPLATIACGGNHSFLISKSSAVFGFGRNNCGQLG 227



 Score = 57.8 bits (138), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 69/284 (24%), Positives = 117/284 (41%), Gaps = 47/284 (16%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSD-VTSVSAGHYHSLAVTNNGAVWA 87
           V+S+GD   G LG  T  + +      P  +  L S  V  ++ G+ HSLA+T+ G +++
Sbjct: 107 VLSWGDNDCGQLGQSTDQSIIEL----PKIIRSLVSKHVVQIACGNNHSLALTSCGELYS 162

Query: 88  WGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSK 147
           WG N   QLG    +  +  N P R+  L  + +      G  S  I    +++ +G++ 
Sbjct: 163 WGSNIYGQLGVKPPQELSHCNYPLRLTTLLGIPLATIACGGNHSFLISKSSAVFGFGRNN 222

Query: 148 RGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNL 207
            GQLGL  +   A  P++++ L    +  V+ G   ++  T +G +F  G    G++G+ 
Sbjct: 223 CGQLGLNDESNRA-YPTQLKTLRTLGVRFVACGDEFSVFLTNEGGVFTCGAGTYGQLGH- 280

Query: 208 GKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVV 267
                                   S+T E   ++V E M                G  + 
Sbjct: 281 -----------------------GSNTNEMLPRMVMELM----------------GSTIT 301

Query: 268 DIACGFDHSLVL-GRNGVLLSCGSNVYGQLGREKQDMGMFPVDI 310
            +ACG  H+L L    G +   G    GQLG    +    P ++
Sbjct: 302 QVACGNRHTLALVPSRGRVYGFGLGSSGQLGNRSTNSVTLPQEV 345



 Score = 47.8 bits (112), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 38/117 (32%), Positives = 58/117 (49%), Gaps = 20/117 (17%)

Query: 245 GMEKEKYM---PIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGRE-- 299
           G+E E+ +    I W+P       +  IACG  H+L L  NG + +CG+N   QLG    
Sbjct: 18  GIEDEQILIPSQIPWKP----DAPLRQIACGHRHTLFLTANGKVYACGNNDQAQLGHNLP 73

Query: 300 -KQDMGMFPVDINFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGR 355
            K+ + + P   N+  V+I+ G  HS+A+ E            ++SWG N   QLG+
Sbjct: 74  TKRPL-LIPELQNYVVVAIACGSRHSMALTEWGQ---------VLSWGDNDCGQLGQ 120


>gi|50418309|gb|AAH77375.1| MGC81587 protein [Xenopus laevis]
          Length = 677

 Score = 89.0 bits (219), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 69/282 (24%), Positives = 124/282 (43%), Gaps = 55/282 (19%)

Query: 55  EPTRVPGLPSDV-TSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRV 113
           +P +V  L + +  +VS G  H+LA+ + G V++WG     Q+G    E       P+ +
Sbjct: 74  KPEQVGALDAQIIVAVSCGEAHTLALNDKGQVFSWGHAAHGQIGVSIAEDYI--RVPRNI 131

Query: 114 EGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEK 173
           + L  + +         S A+  + +++ WG+++ GQLGLG +  +   P  +++L+G  
Sbjct: 132 KSLSDIQIVQVACGHHHSLALSKESNIYSWGQNQYGQLGLGSEKRKESAPRHIKSLSGIP 191

Query: 174 IVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSS 233
              ++ G GH+ A T  G +FGWG +  G++G          L+   DRS          
Sbjct: 192 FAHIAAGGGHSFALTISGAIFGWGRNKFGQLG----------LNDETDRS---------- 231

Query: 234 TIEKAQKLVSEGMEKEKYMPIIWEPFLVEGV---EVVDIACGFDHSLVLGRNGVLLSCGS 290
                                  +P L++ +   +++ I CG DH+  L + G + + G+
Sbjct: 232 -----------------------DPALLKSLRSQKIIYICCGEDHTAALTKEGGVFTFGA 268

Query: 291 NVYGQLGREKQDMGMFPVDINFHPV-----SISSGLGHSLAI 327
             YGQLG       + P  + F  +      I+ G  H+LA 
Sbjct: 269 GGYGQLGHNSASHEVNPRKV-FELMGNIVTQIACGRQHTLAF 309



 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 74/273 (27%), Positives = 116/273 (42%), Gaps = 57/273 (20%)

Query: 87  AWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKS 146
            WG  +  QLG G ++      +P+R +     NV         +  + DDG+++  G +
Sbjct: 3   CWGNASFGQLGLGGIDEEVVI-EPRRCDFFINKNVRDVGCGNRHTGFVLDDGTVYTCGCN 61

Query: 147 KRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGN 206
             GQLG  K   +   P +V AL  + IV VS G  H LA  + G++F WG++A G+IG 
Sbjct: 62  DLGQLGHDKSRKK---PEQVGALDAQIIVAVSCGEAHTLALNDKGQVFSWGHAAHGQIG- 117

Query: 207 LGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEV 266
                                  I+   I   + + S                 +  +++
Sbjct: 118 ---------------------VSIAEDYIRVPRNIKS-----------------LSDIQI 139

Query: 267 VDIACGFDHSLVLGRNGVLLSCGSNVYGQLG----REKQDMGMFPVDINFHPVS-ISSGL 321
           V +ACG  HSL L +   + S G N YGQLG    + K+        ++  P + I++G 
Sbjct: 140 VQVACGHHHSLALSKESNIYSWGQNQYGQLGLGSEKRKESAPRHIKSLSGIPFAHIAAGG 199

Query: 322 GHSLAICEVRSSNVTGGARGIVSWGWNRSSQLG 354
           GHS A+       ++G    I  WG N+  QLG
Sbjct: 200 GHSFAL------TISG---AIFGWGRNKFGQLG 223


>gi|403377072|gb|EJY88530.1| hypothetical protein OXYTRI_12294 [Oxytricha trifallax]
          Length = 709

 Score = 89.0 bits (219), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 75/280 (26%), Positives = 126/280 (45%), Gaps = 50/280 (17%)

Query: 66  VTSVSAGHYHSLAVTNNGAVWAWG-------------RNNEVQLGRGALESRATWNDPKR 112
           +  V+ G YH+LA++  G V+ WG             R +  +     L+S A     K+
Sbjct: 173 IKQVACGDYHTLALSKEGQVYVWGGSLHNKRGDRSQERKDNAKYKPVLLQSFAG----KK 228

Query: 113 VEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGE 172
           ++ +D    C  F S     A+ D+G+L+ WG  ++G+ G GK   +   P R++   G+
Sbjct: 229 IKQID----CGDFHS----LALDDNGTLYSWGVGEKGECGHGK-FEDQETPQRIKFFDGK 279

Query: 173 KIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGK-ALESSPLDSNIDRSSESDQEIS 231
            I ++  G  H LA T D +++ WG   DGR G  G    E++ +   ++  S+ +   +
Sbjct: 280 IITQIEAGNHHTLAITADNQVYAWG---DGRYGQCGFGEFENTAIPQLVNFPSQGNN--T 334

Query: 232 SSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSN 291
           S   +  Q+ + E              F  +  ++  IA G  H+LVL  +G + S G N
Sbjct: 335 SYLDDSVQQEILE--------------FFKDPPKIKQIAAGEMHTLVLTSSGQIFSFGYN 380

Query: 292 VYGQLGREKQDMGMFPVDI----NFHPVSISSGLGHSLAI 327
             GQLG    D    P  +    N   V +++G  HSL +
Sbjct: 381 QQGQLGHNTVDNYCRPKLVEGMLNHKTVQVAAGRNHSLCL 420



 Score = 75.1 bits (183), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 77/280 (27%), Positives = 114/280 (40%), Gaps = 57/280 (20%)

Query: 82  NGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLW 141
           +  VW++G+N + +LG G          P+RV GL ++ V    + G  S  + +DG LW
Sbjct: 83  HAYVWSFGQNTKGELGTGHYNEVLM---PERVRGLPKLKVIFLSSGGKHSGLVTEDGKLW 139

Query: 142 VWGKSKRGQLGLGKDIT---EAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGY 198
           + G +   +LGL    T   +   P  VE L    I +V+ G  H LA +++G+++ WG 
Sbjct: 140 MCGSNLHDKLGLEGITTGSKKTFKP--VELLTQIFIKQVACGDYHTLALSKEGQVYVWGG 197

Query: 199 SADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEP 258
           S   + G               DRS E                     +  KY P++ + 
Sbjct: 198 SLHNKRG---------------DRSQERK-------------------DNAKYKPVLLQS 223

Query: 259 FLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFHP---- 314
           F   G ++  I CG  HSL L  NG L S G    G+ G  K +    P  I F      
Sbjct: 224 FA--GKKIKQIDCGDFHSLALDDNGTLYSWGVGEKGECGHGKFEDQETPQRIKFFDGKII 281

Query: 315 VSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLG 354
             I +G  H+LAI              + +WG  R  Q G
Sbjct: 282 TQIEAGNHHTLAIT---------ADNQVYAWGDGRYGQCG 312



 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 49/198 (24%), Positives = 85/198 (42%), Gaps = 26/198 (13%)

Query: 28  AVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDV-TSVSAGHYHSLAVTNNGAVW 86
            + S+G G +G  G      G   D   P R+      + T + AG++H+LA+T +  V+
Sbjct: 247 TLYSWGVGEKGECG-----HGKFEDQETPQRIKFFDGKIITQIEAGNHHTLAITADNQVY 301

Query: 87  AWGRNNEVQLGRGALESRA---------TWNDPKRVEGLDQVNVCAAF---------ASG 128
           AWG     Q G G  E+ A           N+   ++   Q  +   F         A+G
Sbjct: 302 AWGDGRYGQCGFGEFENTAIPQLVNFPSQGNNTSYLDDSVQQEILEFFKDPPKIKQIAAG 361

Query: 129 VVSS-AIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQ 187
            + +  +   G ++ +G +++GQLG    +     P  VE +   K V+V+ G  H+L  
Sbjct: 362 EMHTLVLTSSGQIFSFGYNQQGQLG-HNTVDNYCRPKLVEGMLNHKTVQVAAGRNHSLCL 420

Query: 188 TEDGKLFGWGYSADGRIG 205
           T    ++  G +  G+ G
Sbjct: 421 TNKNDVYACGNNQYGQCG 438



 Score = 44.3 bits (103), Expect = 0.085,   Method: Compositional matrix adjust.
 Identities = 46/129 (35%), Positives = 57/129 (44%), Gaps = 19/129 (14%)

Query: 11  HVNVLTSRIFMRSASGTAVVSFGDGSQGALGLPTSLTGVGGDAY-EPTRVPGLPSDVT-S 68
           H  VLTS       SG  + SFG   QG LG  T       D Y  P  V G+ +  T  
Sbjct: 364 HTLVLTS-------SG-QIFSFGYNQQGQLGHNTV------DNYCRPKLVEGMLNHKTVQ 409

Query: 69  VSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASG 128
           V+AG  HSL +TN   V+A G N   Q G    E R T++    V  L  VN    +A G
Sbjct: 410 VAAGRNHSLCLTNKNDVYACGNNQYGQCGLPDREMRKTFS---HVLSLLSVNSFKLYAGG 466

Query: 129 VVSSAIGDD 137
             S  + D+
Sbjct: 467 FHSWVVLDE 475


>gi|397494815|ref|XP_003818266.1| PREDICTED: uncharacterized protein LOC100982654 [Pan paniscus]
          Length = 885

 Score = 89.0 bits (219), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 92/313 (29%), Positives = 134/313 (42%), Gaps = 43/313 (13%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAW 88
           V+S G  S G LG+P            P  +      V  ++AG  H+LA T +G V+ W
Sbjct: 549 VLSCGSNSFGQLGVPHG----PRRCVVPQAIEFHKEKVVCIAAGLRHALAATASGIVFQW 604

Query: 89  GRNNEVQLGR-----GALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVW 143
           G       GR       L    T  +P RV GL+        A    S+++ D G ++VW
Sbjct: 605 G-TGLAPCGRRLCPGQTLPLFFTAKEPSRVTGLENSKAMCVLAGSDHSASLTDAGEVYVW 663

Query: 144 GKSKRGQLGLGKDITEAIVPSRVEA--LAGEKIVKVSFGWGHALAQTEDGKLFGWGYSAD 201
           G +K GQL    +     VP ++EA     EK+  +  GW H +AQTE GK+F WG  AD
Sbjct: 664 GSNKHGQLA--NEAAFLPVPQKIEAHCFQNEKVTAIWSGWTHLVAQTETGKMFTWG-RAD 720

Query: 202 GRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLV 261
              G LG+ LE+                     +EK    +         MP    P  +
Sbjct: 721 --YGQLGRKLET----------------YEGWKLEKQDSFLPCSRPPNS-MPS--SPHCL 759

Query: 262 EGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQL--GREKQDMGMFPVD--INFHPVSI 317
            G    +++CG +H+L +   GV  S G N +G    G E       PV   ++   + +
Sbjct: 760 TG--ATEVSCGSEHNLAI-IGGVCYSWGWNEHGMCGDGTEANVWAPKPVQALLSSSGLLV 816

Query: 318 SSGLGHSLAICEV 330
             G GHSLA+C++
Sbjct: 817 GCGAGHSLALCQL 829



 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 97/381 (25%), Positives = 147/381 (38%), Gaps = 65/381 (17%)

Query: 33  GDGSQGALGLPTSLTGVGGDAYEPTRVPGL--PSDVTSVSAGHYHSLAVTNNGAVWAWGR 90
           G  S G LGL     G   D   P ++     P  V  ++ G  HS  VT+ G ++  G 
Sbjct: 448 GANSYGQLGL-----GHKEDVLLPQQLNDFCKPRSVRRITGGGGHSAVVTDGGDLFVCGL 502

Query: 91  NNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQ 150
           N + QLG G  E    +   K + G     V   +   ++   + ++G +   G +  GQ
Sbjct: 503 NKDGQLGLGHTEDIPYFTPCKSLFGCAIQQVACGWDFTIM---LTENGQVLSCGSNSFGQ 559

Query: 151 LGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGW--GYSADGRIGNLG 208
           LG+       +VP  +E    EK+V ++ G  HALA T  G +F W  G +  GR    G
Sbjct: 560 LGVPHGPRRCVVPQAIE-FHKEKVVCIAAGLRHALAATASGIVFQWGTGLAPCGRRLCPG 618

Query: 209 KALESSPLDSNIDRSS-----ESDQEIS-------SSTIEKAQKLVSEGMEKE------- 249
           + L   PL       S     E+ + +        S+++  A ++   G  K        
Sbjct: 619 QTL---PLFFTAKEPSRVTGLENSKAMCVLAGSDHSASLTDAGEVYVWGSNKHGQLANEA 675

Query: 250 KYMPIIW--EPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGR--------- 298
            ++P+    E    +  +V  I  G+ H +     G + + G   YGQLGR         
Sbjct: 676 AFLPVPQKIEAHCFQNEKVTAIWSGWTHLVAQTETGKMFTWGRADYGQLGRKLETYEGWK 735

Query: 299 -EKQDMGMFPVDINFHPVSISSGLGHSLAICEVRSSNVTGGARG--------IVSWGWNR 349
            EKQD        +F P S       S   C   ++ V+ G+            SWGWN 
Sbjct: 736 LEKQD--------SFLPCSRPPNSMPSSPHCLTGATEVSCGSEHNLAIIGGVCYSWGWNE 787

Query: 350 SSQLGRMGPDNV--PLVVEGL 368
               G     NV  P  V+ L
Sbjct: 788 HGMCGDGTEANVWAPKPVQAL 808



 Score = 54.3 bits (129), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 94/363 (25%), Positives = 149/363 (41%), Gaps = 62/363 (17%)

Query: 31  SFGDGSQGALGLPTSLTGVGGDAYEP-TRVPGLPSDVTSVSAGH---YHSLAVTNNGAVW 86
           SF D  +       ++    G  Y P TR   +  D  S+++      H L V ++    
Sbjct: 388 SFEDAKEKMREFTKTIKRPFGVKYNPYTRSIQILKDTKSITSAMNELQHDLDVVSDAL-- 445

Query: 87  AWGRNNEVQLGRGALES---RATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVW 143
           A G N+  QLG G  E        ND  +   + ++        G  S+ + D G L+V 
Sbjct: 446 AKGANSYGQLGLGHKEDVLLPQQLNDFCKPRSVRRIT-----GGGGHSAVVTDGGDLFVC 500

Query: 144 GKSKRGQLGLGKDITEAI-VPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADG 202
           G +K GQLGLG   TE I   +  ++L G  I +V+ GW   +  TE+G++   G ++ G
Sbjct: 501 GLNKDGQLGLGH--TEDIPYFTPCKSLFGCAIQQVACGWDFTIMLTENGQVLSCGSNSFG 558

Query: 203 RIGNLGKALESSPLDSNIDRSSESDQE---ISSSTIEKAQKLVSEGMEKE---------- 249
           ++G     +   P    + ++ E  +E     ++ +  A    + G+  +          
Sbjct: 559 QLG-----VPHGPRRCVVPQAIEFHKEKVVCIAAGLRHALAATASGIVFQWGTGLAPCGR 613

Query: 250 -----KYMPIIW---EPFLVEGVEVVDIAC---GFDHSLVLGRNGVLLSCGSNVYGQLGR 298
                + +P+ +   EP  V G+E     C   G DHS  L   G +   GSN +GQL  
Sbjct: 614 RLCPGQTLPLFFTAKEPSRVTGLENSKAMCVLAGSDHSASLTDAGEVYVWGSNKHGQLAN 673

Query: 299 EKQDMGMFPVDINFHP------VSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQ 352
           E   + + P  I  H        +I SG  H +A  E      TG    + +WG     Q
Sbjct: 674 EAAFLPV-PQKIEAHCFQNEKVTAIWSGWTHLVAQTE------TG---KMFTWGRADYGQ 723

Query: 353 LGR 355
           LGR
Sbjct: 724 LGR 726


>gi|348534545|ref|XP_003454762.1| PREDICTED: hypothetical protein LOC100691941 [Oreochromis
           niloticus]
          Length = 1536

 Score = 89.0 bits (219), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 92/308 (29%), Positives = 149/308 (48%), Gaps = 36/308 (11%)

Query: 15  LTSRIFMRSASG---TAVVS-------FGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPS 64
           L + I +R A G   TA+++       FG  + G LGL + +T       +PT V  L S
Sbjct: 33  LKNDIPLRIACGDEHTALITENGKLFMFGSNNWGQLGLGSKVT-----VNKPTCVKALKS 87

Query: 65  D-VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCA 123
           + V  V+ G  H+L  T  G V+A G N+E QLG G  E R ++   KR++  D      
Sbjct: 88  EKVQLVACGRNHTLICTAKGKVYASGGNSEGQLGLGDCEERTSF---KRLDFFDSQGPIK 144

Query: 124 AFASGV-VSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWG 182
             A+G   S+A+   G L++WG +  GQ+GLGK   E+ V S  E   G+ I  VS G+ 
Sbjct: 145 MLAAGSNTSAALTVSGKLFMWGDNTEGQIGLGK---ESQVSSPQEVSVGQPISWVSCGYY 201

Query: 183 HALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISS---STIEKAQ 239
           H+   T DG L+ +G    G++G     L    +   +    E  ++++     T+  A+
Sbjct: 202 HSALVTVDGALYTFGERDSGKLGLGTHQLPGHRVPQLVKSIKEPVRQVACGGGHTVALAE 261

Query: 240 -KLVSEGMEKEKYM---PIIWE---PFLVEGVE---VVDIACGFDHSLVLGRNGVLLSCG 289
             + + G+ +   +     I+E   P LVE  +      + CG +H+ V+  +G+L + G
Sbjct: 262 GNVYTFGLGQFGQLGHGTFIFESRVPRLVEHFKKGRACQVVCGENHTAVITEDGLLYTFG 321

Query: 290 SNVYGQLG 297
              +G+LG
Sbjct: 322 DGRHGKLG 329


>gi|386780927|ref|NP_001247543.1| RCC1 and BTB domain-containing protein 1 [Macaca mulatta]
 gi|402902026|ref|XP_003913930.1| PREDICTED: RCC1 and BTB domain-containing protein 1 isoform 1
           [Papio anubis]
 gi|355754700|gb|EHH58601.1| Regulator of chromosome condensation and BTB domain-containing
           protein 1 [Macaca fascicularis]
 gi|383419643|gb|AFH33035.1| RCC1 and BTB domain-containing protein 1 [Macaca mulatta]
 gi|383419645|gb|AFH33036.1| RCC1 and BTB domain-containing protein 1 [Macaca mulatta]
          Length = 531

 Score = 89.0 bits (219), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 54/162 (33%), Positives = 88/162 (54%), Gaps = 5/162 (3%)

Query: 62  LPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNV 121
           L   V  V+ G +HS+A+  +G V+AWG NN  Q+G G+  ++ T   P++V     +  
Sbjct: 126 LIKQVVEVACGSHHSMALAADGEVFAWGYNNCGQVGSGSTANQPT---PRKVTNCLHIKR 182

Query: 122 CAAFASGVVSS-AIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFG 180
               A G  SS A+ D+G ++ WG +  GQLGLG +  + + P RV AL    + ++  G
Sbjct: 183 VVGIACGQTSSMAVLDNGEVYGWGYNGNGQLGLGNNGNQ-LTPVRVAALHSVCVNQIVCG 241

Query: 181 WGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDR 222
           + H LA T++G L+ WG +  G++G   K    SP    +++
Sbjct: 242 YAHTLALTDEGLLYAWGANTYGQLGTGNKNNLLSPAHIMVEK 283



 Score = 75.9 bits (185), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 71/293 (24%), Positives = 117/293 (39%), Gaps = 67/293 (22%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLP-SDVTSVSAGH-YHSLAVTNNGAVW 86
           V  FG      LG     TG       P ++ GL    + S+S G   H L  T +G V+
Sbjct: 43  VFVFGLNYSNCLG-----TGDNQSTLVPKKLEGLSGKKIKSLSYGSGPHVLLSTEDGVVY 97

Query: 87  AWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVV---------SSAIGDD 137
           AWG N   QLG G              +G+  + VC       V         S A+  D
Sbjct: 98  AWGHNGYSQLGNGTTN-----------QGIAPIQVCTNLLIKQVVEVACGSHHSMALAAD 146

Query: 138 GSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWG 197
           G ++ WG +  GQ+G G    +         L  +++V ++ G   ++A  ++G+++GWG
Sbjct: 147 GEVFAWGYNNCGQVGSGSTANQPTPRKVTNCLHIKRVVGIACGQTSSMAVLDNGEVYGWG 206

Query: 198 YSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWE 257
           Y+ +G++G      + +P+             +++                         
Sbjct: 207 YNGNGQLGLGNNGNQLTPV------------RVAA------------------------- 229

Query: 258 PFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDI 310
              +  V V  I CG+ H+L L   G+L + G+N YGQLG   ++  + P  I
Sbjct: 230 ---LHSVCVNQIVCGYAHTLALTDEGLLYAWGANTYGQLGTGNKNNLLSPAHI 279



 Score = 68.9 bits (167), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 76/293 (25%), Positives = 129/293 (44%), Gaps = 60/293 (20%)

Query: 76  SLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCA-AFASGVVSSAI 134
           +L VT++  V+ +G N    LG G  +S      PK++EGL    + + ++ SG      
Sbjct: 34  ALYVTDDDEVFVFGLNYSNCLGTGDNQSTLV---PKKLEGLSGKKIKSLSYGSGPHVLLS 90

Query: 135 GDDGSLWVWGKSKRGQLGLGKDITEAIVPSRV-EALAGEKIVKVSFGWGHALAQTEDGKL 193
            +DG ++ WG +   QLG G    + I P +V   L  +++V+V+ G  H++A   DG++
Sbjct: 91  TEDGVVYAWGHNGYSQLGNGT-TNQGIAPIQVCTNLLIKQVVEVACGSHHSMALAADGEV 149

Query: 194 FGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMP 253
           F WGY+  G++G+   A + +P                        + V+  +  ++   
Sbjct: 150 FAWGYNNCGQVGSGSTANQPTP------------------------RKVTNCLHIKR--- 182

Query: 254 IIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDI-NF 312
                       VV IACG   S+ +  NG +   G N  GQLG       + PV +   
Sbjct: 183 ------------VVGIACGQTSSMAVLDNGEVYGWGYNGNGQLGLGNNGNQLTPVRVAAL 230

Query: 313 HPVSIS---SGLGHSLAICEVRSSNVTGGARGIV-SWGWNRSSQLGRMGPDNV 361
           H V ++    G  H+LA+ +           G++ +WG N   QLG    +N+
Sbjct: 231 HSVCVNQIVCGYAHTLALTD----------EGLLYAWGANTYGQLGTGNKNNL 273


>gi|76678806|ref|XP_586049.2| PREDICTED: RCC1 and BTB domain-containing protein 1-like, partial
           [Bos taurus]
          Length = 425

 Score = 88.6 bits (218), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 54/162 (33%), Positives = 88/162 (54%), Gaps = 5/162 (3%)

Query: 62  LPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNV 121
           L   V  V+ G +HS+A+  +G V+AWG NN  Q+G G+  ++ T   P++V     +  
Sbjct: 33  LIKQVVEVACGSHHSMALAADGEVFAWGYNNCGQVGSGSTANQPT---PRKVTNCLHIKR 89

Query: 122 CAAFASGVVSS-AIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFG 180
               A G  SS A+ D+G ++ WG +  GQLGLG +  + + P RV AL    + ++  G
Sbjct: 90  VVGIACGQTSSMAVLDNGEVYGWGYNGNGQLGLGNNGNQ-LTPVRVAALHSVCVNQIVCG 148

Query: 181 WGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDR 222
           + H LA T++G L+ WG +  G++G   K    SP    +++
Sbjct: 149 YAHTLALTDEGLLYAWGANTYGQLGTGNKNNLLSPAHIMVEK 190



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 56/237 (23%), Positives = 96/237 (40%), Gaps = 60/237 (25%)

Query: 83  GAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVV---------SSA 133
           G V+AWG N   QLG G              +GL  + VC       V         S A
Sbjct: 1   GVVYAWGHNGYSQLGNGTTN-----------QGLAPIQVCTNLLIKQVVEVACGSHHSMA 49

Query: 134 IGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKL 193
           +  DG ++ WG +  GQ+G G    +         L  +++V ++ G   ++A  ++G++
Sbjct: 50  LAADGEVFAWGYNNCGQVGSGSTANQPTPRKVTNCLHIKRVVGIACGQTSSMAVLDNGEV 109

Query: 194 FGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMP 253
           +GWGY+ +G++G      + +P+             +++                     
Sbjct: 110 YGWGYNGNGQLGLGNNGNQLTPV------------RVAA--------------------- 136

Query: 254 IIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDI 310
                  +  V V  I CG+ H+L L   G+L + G+N YGQLG   ++  + P  I
Sbjct: 137 -------LHSVCVNQIVCGYAHTLALTDEGLLYAWGANTYGQLGTGNKNNLLSPAHI 186



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 57/230 (24%), Positives = 98/230 (42%), Gaps = 56/230 (24%)

Query: 138 GSLWVWGKSKRGQLGLGKDITEAIVPSRV-EALAGEKIVKVSFGWGHALAQTEDGKLFGW 196
           G ++ WG +   QLG G    + + P +V   L  +++V+V+ G  H++A   DG++F W
Sbjct: 1   GVVYAWGHNGYSQLGNGT-TNQGLAPIQVCTNLLIKQVVEVACGSHHSMALAADGEVFAW 59

Query: 197 GYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIW 256
           GY+  G++G+   A + +P                        + V+  +  ++      
Sbjct: 60  GYNNCGQVGSGSTANQPTP------------------------RKVTNCLHIKR------ 89

Query: 257 EPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDI-NFHPV 315
                    VV IACG   S+ +  NG +   G N  GQLG       + PV +   H V
Sbjct: 90  ---------VVGIACGQTSSMAVLDNGEVYGWGYNGNGQLGLGNNGNQLTPVRVAALHSV 140

Query: 316 SIS---SGLGHSLAICEVRSSNVTGGARGIV-SWGWNRSSQLGRMGPDNV 361
            ++    G  H+LA+ +           G++ +WG N   QLG    +N+
Sbjct: 141 CVNQIVCGYAHTLALTD----------EGLLYAWGANTYGQLGTGNKNNL 180


>gi|357520085|ref|XP_003630331.1| RCC1 and BTB domain-containing protein [Medicago truncatula]
 gi|355524353|gb|AET04807.1| RCC1 and BTB domain-containing protein [Medicago truncatula]
          Length = 371

 Score = 88.6 bits (218), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 63/186 (33%), Positives = 94/186 (50%), Gaps = 11/186 (5%)

Query: 22  RSASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPS-DVTSVSAGHYHSLAVT 80
           RS SG  V S+G G  G LG      G   D + P  +  L    +  +S G  H LAVT
Sbjct: 171 RSKSGKDVYSWGWGDFGRLG-----HGDPSDLFIPHPIRALQGLRIKQISCGDCHCLAVT 225

Query: 81  NNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSL 140
               V +WGRN   +LG G  +       P+++   + + +    A    S AI +DG L
Sbjct: 226 MENKVLSWGRNQNGELGLGTTKDSHV---PQKILAFEGIRIKMVAAGAEHSVAITEDGDL 282

Query: 141 WVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSA 200
           + WG  + G LGLG D  + ++P +V  + G+KIV VS GW H ++ +  G L+  G+S 
Sbjct: 283 YGWGWGRYGNLGLG-DTNDRLIPEKVN-IDGDKIVMVSCGWRHTISISSSGGLYTHGWSK 340

Query: 201 DGRIGN 206
            G++G+
Sbjct: 341 YGQLGH 346



 Score = 85.5 bits (210), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 83/309 (26%), Positives = 138/309 (44%), Gaps = 55/309 (17%)

Query: 8   VHNHVNVLTSRIF---MRSASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLP- 63
           VH+ +  L S +F       SG  V S+G G  G LG      G   D   PT++     
Sbjct: 101 VHSGMLNLFSSLFNSIQNQVSGNVVCSWGRGEDGQLG-----HGDTDDRLLPTKLSAFDG 155

Query: 64  SDVTSVSAGHYHSLAVTNNGA-VWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVC 122
            D+ SV+ G  +++A + +G  V++WG  +  +LG G          P  +  L  + + 
Sbjct: 156 QDIVSVTCGADYTVARSKSGKDVYSWGWGDFGRLGHGDPSDLFI---PHPIRALQGLRIK 212

Query: 123 AAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWG 182
                     A+  +  +  WG+++ G+LGLG    ++ VP ++ A  G +I  V+ G  
Sbjct: 213 QISCGDCHCLAVTMENKVLSWGRNQNGELGLGT-TKDSHVPQKILAFEGIRIKMVAAGAE 271

Query: 183 HALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLV 242
           H++A TEDG L+GWG+   GR GNLG        D+N DR                    
Sbjct: 272 HSVAITEDGDLYGWGW---GRYGNLGLG------DTN-DR-------------------- 301

Query: 243 SEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQD 302
                      +I E   ++G ++V ++CG+ H++ +  +G L + G + YGQLG    +
Sbjct: 302 -----------LIPEKVNIDGDKIVMVSCGWRHTISISSSGGLYTHGWSKYGQLGHGDFE 350

Query: 303 MGMFPVDIN 311
             + P  + 
Sbjct: 351 DCLVPRKVQ 359



 Score = 75.9 bits (185), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 84/334 (25%), Positives = 138/334 (41%), Gaps = 61/334 (18%)

Query: 41  GLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNG-AVWAWGRNNEVQLGRG 99
           G+P   T    +  EP +V    S + ++ +  ++S+    +G  V +WGR  + QLG G
Sbjct: 83  GVPLFSTRRNKEEEEPVKVH---SGMLNLFSSLFNSIQNQVSGNVVCSWGRGEDGQLGHG 139

Query: 100 ALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITE 159
             + R         +G D V+V       V  S  G D   W WG    G+LG G D ++
Sbjct: 140 DTDDRLLPTKLSAFDGQDIVSVTCGADYTVARSKSGKDVYSWGWGDF--GRLGHG-DPSD 196

Query: 160 AIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSN 219
             +P  + AL G +I ++S G  H LA T + K+  WG + +G +G              
Sbjct: 197 LFIPHPIRALQGLRIKQISCGDCHCLAVTMENKVLSWGRNQNGELG-------------- 242

Query: 220 IDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVL 279
                                    G  K+ ++P     F  EG+ +  +A G +HS+ +
Sbjct: 243 ------------------------LGTTKDSHVPQKILAF--EGIRIKMVAAGAEHSVAI 276

Query: 280 GRNGVLLSCGSNVYGQLGREKQDMGMFPVDINF---HPVSISSGLGHSLAICEVRSSNVT 336
             +G L   G   YG LG    +  + P  +N      V +S G  H+++I         
Sbjct: 277 TEDGDLYGWGWGRYGNLGLGDTNDRLIPEKVNIDGDKIVMVSCGWRHTISISS------- 329

Query: 337 GGARGIVSWGWNRSSQLGRMGPDN--VPLVVEGL 368
             + G+ + GW++  QLG    ++  VP  V+ L
Sbjct: 330 --SGGLYTHGWSKYGQLGHGDFEDCLVPRKVQAL 361


>gi|26353276|dbj|BAC40268.1| unnamed protein product [Mus musculus]
          Length = 531

 Score = 88.6 bits (218), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 57/180 (31%), Positives = 92/180 (51%), Gaps = 5/180 (2%)

Query: 62  LPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNV 121
           L   V  V+ G +HS+A+  +G ++AWG NN  Q+G G+  ++ T   P+++        
Sbjct: 126 LIKQVIEVACGSHHSMALAADGELFAWGYNNCGQVGSGSTANQPT---PRKITNCLHTKR 182

Query: 122 CAAFASGVVSS-AIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFG 180
               A G  SS A+ D G ++ WG +  GQLGLG +  + + P RV AL G  + ++  G
Sbjct: 183 VVNIACGQTSSMAVLDSGEVYGWGYNGNGQLGLGNNGNQ-LTPVRVAALHGMCVNQIVCG 241

Query: 181 WGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQK 240
           + H LA T++G L+ WG +  G++G   K    SP    +++    +     ST   A K
Sbjct: 242 YAHTLALTDEGLLYAWGANTYGQLGTGSKNNLLSPTQIMVEKERVIEIAACHSTHTSAAK 301



 Score = 79.0 bits (193), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 72/293 (24%), Positives = 116/293 (39%), Gaps = 67/293 (22%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLP-SDVTSVSAGH-YHSLAVTNNGAVW 86
           V  FG      LG     TG       P ++  L    + S+S G   H L  T +G V+
Sbjct: 43  VFVFGLNYSNCLG-----TGDNQSTLVPKKLEALCGKKIKSLSYGSGPHVLLTTEDGVVY 97

Query: 87  AWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVV---------SSAIGDD 137
           AWG N   QLG G              +G+  V VC       V         S A+  D
Sbjct: 98  AWGHNGYSQLGNGTTN-----------QGIAPVQVCTNLLIKQVIEVACGSHHSMALAAD 146

Query: 138 GSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWG 197
           G L+ WG +  GQ+G G    +         L  +++V ++ G   ++A  + G+++GWG
Sbjct: 147 GELFAWGYNNCGQVGSGSTANQPTPRKITNCLHTKRVVNIACGQTSSMAVLDSGEVYGWG 206

Query: 198 YSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWE 257
           Y+ +G++G      + +P+             +++                         
Sbjct: 207 YNGNGQLGLGNNGNQLTPV------------RVAA------------------------- 229

Query: 258 PFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDI 310
              + G+ V  I CG+ H+L L   G+L + G+N YGQLG   ++  + P  I
Sbjct: 230 ---LHGMCVNQIVCGYAHTLALTDEGLLYAWGANTYGQLGTGSKNNLLSPTQI 279



 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 67/246 (27%), Positives = 106/246 (43%), Gaps = 59/246 (23%)

Query: 134 IGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWG-HALAQTEDGK 192
           + D+  ++V+G +    LG G D    +VP ++EAL G+KI  +S+G G H L  TEDG 
Sbjct: 37  VTDNDEVFVFGLNYSNCLGTG-DNQSTLVPKKLEALCGKKIKSLSYGSGPHVLLTTEDGV 95

Query: 193 LFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYM 252
           ++ WG++   ++GN                                      G   +   
Sbjct: 96  VYAWGHNGYSQLGN--------------------------------------GTTNQGIA 117

Query: 253 PI-IWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDIN 311
           P+ +    L++  +V+++ACG  HS+ L  +G L + G N  GQ+G         P  I 
Sbjct: 118 PVQVCTNLLIK--QVIEVACGSHHSMALAADGELFAWGYNNCGQVGSGSTANQPTPRKIT 175

Query: 312 --FHP---VSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQ--LGRMGPDNVPLV 364
              H    V+I+ G   S+A+  + S  V G       WG+N + Q  LG  G    P+ 
Sbjct: 176 NCLHTKRVVNIACGQTSSMAV--LDSGEVYG-------WGYNGNGQLGLGNNGNQLTPVR 226

Query: 365 VEGLEG 370
           V  L G
Sbjct: 227 VAALHG 232


>gi|145593744|ref|YP_001158041.1| cell wall anchor domain-containing protein [Salinispora tropica
           CNB-440]
 gi|145303081|gb|ABP53663.1| LPXTG-motif cell wall anchor domain [Salinispora tropica CNB-440]
          Length = 577

 Score = 88.6 bits (218), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 94/344 (27%), Positives = 143/344 (41%), Gaps = 38/344 (11%)

Query: 30  VSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSD--VTSVSAGHYHSLAVTNNGAVWA 87
           +++G   +G LG      G   ++ +P  V  LP+   +T ++ G  HSLA+T+ G++ A
Sbjct: 59  LTWGQNDRGQLG-----NGTTTNSTDPVEV-SLPAGTLLTDIAGGGKHSLALTSTGSLLA 112

Query: 88  WGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSK 147
           WG N   QLG G   S    N P  V+      V A  A    S A+   G++  WG + 
Sbjct: 113 WGNNANGQLGDGTTTSS---NTPVAVDLPAGTEVVAIAAGNDHSLALTSTGAVLAWGDNS 169

Query: 148 RGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNL 207
            GQLG G +   +  P  V+         ++ G  H+L+ T  G  F WG + +G++G+ 
Sbjct: 170 SGQLGDGTNDDRS-TPVTVDLPTTSTTTAIAAGSVHSLSLTSTGSAFAWGNNDEGQLGDE 228

Query: 208 GKALESSPLD---------SNIDRSSESDQEISSSTIEKA-----QKLVSEGMEKEKYMP 253
                + P++         + I   S     I+S     A     Q  + +G       P
Sbjct: 229 STTSTNKPVNVALTTGTTLTAIAGGSAHSLGITSDNTAVAWGSNSQGQLGDGTNTNALAP 288

Query: 254 IIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFH 313
           +     L  G  V  IA G  HS+ L  NG   + G+N  GQLG         PV+++  
Sbjct: 289 V--NVALTTGTTVTAIAAGLLHSVALLTNGTAATWGNNATGQLGNGNNVTSNTPVEVSLP 346

Query: 314 PVSISSGLGHSLAICEVRSSNVT---GGARGIVSWGWNRSSQLG 354
                   G +L      SSN T         ++WG N   QLG
Sbjct: 347 S-------GTTLTAIAANSSNHTVAITNTETALAWGDNSFGQLG 383


>gi|148704197|gb|EDL36144.1| regulator of chromosome condensation (RCC1) and BTB (POZ) domain
           containing protein 1, isoform CRA_b [Mus musculus]
          Length = 563

 Score = 88.6 bits (218), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 58/180 (32%), Positives = 92/180 (51%), Gaps = 5/180 (2%)

Query: 62  LPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNV 121
           L   V  V+ G +HS+A+  +G ++AWG NN  Q+G G+  ++ T   P++V        
Sbjct: 158 LIKQVIEVACGSHHSMALAADGELFAWGYNNCGQVGSGSTANQPT---PRKVTNCLHTKR 214

Query: 122 CAAFASGVVSS-AIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFG 180
               A G  SS A+ D G ++ WG +  GQLGLG +  + + P RV AL G  + ++  G
Sbjct: 215 VVNIACGQTSSMAVLDSGEVYGWGYNGNGQLGLGNNGNQ-LTPVRVAALHGMCVNQIVCG 273

Query: 181 WGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQK 240
           + H LA T++G L+ WG +  G++G   K    SP    +++    +     ST   A K
Sbjct: 274 YAHTLALTDEGLLYAWGANTYGQLGTGSKNNLLSPTQIMVEKERVIEIAACHSTHTSAAK 333



 Score = 78.6 bits (192), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 72/293 (24%), Positives = 116/293 (39%), Gaps = 67/293 (22%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLP-SDVTSVSAGH-YHSLAVTNNGAVW 86
           V  FG      LG     TG       P ++  L    + S+S G   H L  T +G V+
Sbjct: 75  VFVFGLNYSNCLG-----TGDNQSTLVPKKLEALCGKKIKSLSYGSGPHVLLTTEDGVVY 129

Query: 87  AWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVV---------SSAIGDD 137
           AWG N   QLG G              +G+  V VC       V         S A+  D
Sbjct: 130 AWGHNGYSQLGNGTTN-----------QGIAPVQVCTNLLIKQVIEVACGSHHSMALAAD 178

Query: 138 GSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWG 197
           G L+ WG +  GQ+G G    +         L  +++V ++ G   ++A  + G+++GWG
Sbjct: 179 GELFAWGYNNCGQVGSGSTANQPTPRKVTNCLHTKRVVNIACGQTSSMAVLDSGEVYGWG 238

Query: 198 YSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWE 257
           Y+ +G++G      + +P+             +++                         
Sbjct: 239 YNGNGQLGLGNNGNQLTPV------------RVAA------------------------- 261

Query: 258 PFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDI 310
              + G+ V  I CG+ H+L L   G+L + G+N YGQLG   ++  + P  I
Sbjct: 262 ---LHGMCVNQIVCGYAHTLALTDEGLLYAWGANTYGQLGTGSKNNLLSPTQI 311



 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 66/246 (26%), Positives = 106/246 (43%), Gaps = 59/246 (23%)

Query: 134 IGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWG-HALAQTEDGK 192
           + D+  ++V+G +    LG G D    +VP ++EAL G+KI  +S+G G H L  TEDG 
Sbjct: 69  VTDNDEVFVFGLNYSNCLGTG-DNQSTLVPKKLEALCGKKIKSLSYGSGPHVLLTTEDGV 127

Query: 193 LFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYM 252
           ++ WG++   ++GN                                      G   +   
Sbjct: 128 VYAWGHNGYSQLGN--------------------------------------GTTNQGIA 149

Query: 253 PI-IWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDIN 311
           P+ +    L++  +V+++ACG  HS+ L  +G L + G N  GQ+G         P  + 
Sbjct: 150 PVQVCTNLLIK--QVIEVACGSHHSMALAADGELFAWGYNNCGQVGSGSTANQPTPRKVT 207

Query: 312 --FHP---VSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQ--LGRMGPDNVPLV 364
              H    V+I+ G   S+A+  + S  V G       WG+N + Q  LG  G    P+ 
Sbjct: 208 NCLHTKRVVNIACGQTSSMAV--LDSGEVYG-------WGYNGNGQLGLGNNGNQLTPVR 258

Query: 365 VEGLEG 370
           V  L G
Sbjct: 259 VAALHG 264


>gi|332819950|ref|XP_003310459.1| PREDICTED: E3 ISG15--protein ligase HERC5 [Pan troglodytes]
          Length = 957

 Score = 88.6 bits (218), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 72/232 (31%), Positives = 114/232 (49%), Gaps = 25/232 (10%)

Query: 22  RSASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVP-------GLPSDVTSVSAGHY 74
           R+ SG  + ++G    G LG+        G  +  T  P       G+P  +  +SAG  
Sbjct: 86  RTPSG-ELFAWGQNLHGQLGV--------GRKFPSTTTPQIVEHLAGVP--LAQISAGEA 134

Query: 75  HSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAI 134
           HS+A++ +G +++WG+N   QLG G  ES+   + P  +EGLD   V      G  S+ +
Sbjct: 135 HSMALSMSGNIYSWGKNEFGQLGLGHTESK---DYPSLIEGLDNQKVEFVACGGSHSALL 191

Query: 135 GDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTED-GKL 193
             DG L+ +G  K GQLG      E + P  V  L   ++ +++ G  H LA   D GK+
Sbjct: 192 TQDGLLFTFGAGKHGQLGHNSTQNE-LRPCLVAELVEYRVTQIACGRWHTLAYVSDLGKV 250

Query: 194 FGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEG 245
           F +G   DG++GN G   +  PL   +  SS  + ++ S T EK   +++ G
Sbjct: 251 FSFGSGKDGQLGNGGTRDQLMPLPVKV--SSSEELKLESHTSEKELIMIAGG 300



 Score = 68.2 bits (165), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 77/269 (28%), Positives = 112/269 (41%), Gaps = 47/269 (17%)

Query: 78  AVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDD 137
           A T +G ++AWG+N   QLG G      T   P+ VE L  V +    A    S A+   
Sbjct: 85  ARTPSGELFAWGQNLHGQLGVGRKFPSTT--TPQIVEHLAGVPLAQISAGEAHSMALSMS 142

Query: 138 GSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWG 197
           G+++ WGK++ GQLGLG   ++   PS +E L  +K+  V+ G  H+   T+DG LF +G
Sbjct: 143 GNIYSWGKNEFGQLGLGHTESKD-YPSLIEGLDNQKVEFVACGGSHSALLTQDGLLFTFG 201

Query: 198 YSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWE 257
               G++G+     E  P                         LV+E +E          
Sbjct: 202 AGKHGQLGHNSTQNELRPC------------------------LVAELVE---------- 227

Query: 258 PFLVEGVEVVDIACGFDHSLVLGRN-GVLLSCGSNVYGQLGREKQDMGMFPVDINFHPVS 316
                   V  IACG  H+L    + G + S GS   GQLG       + P+ +    VS
Sbjct: 228 ------YRVTQIACGRWHTLAYVSDLGKVFSFGSGKDGQLGNGGTRDQLMPLPVK---VS 278

Query: 317 ISSGLGHSLAICEVRSSNVTGGARGIVSW 345
            S  L       E     + GG + I+ W
Sbjct: 279 SSEELKLESHTSEKELIMIAGGNQSILLW 307


>gi|332233500|ref|XP_003265940.1| PREDICTED: E3 ISG15--protein ligase HERC5 [Nomascus leucogenys]
          Length = 1024

 Score = 88.6 bits (218), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 68/221 (30%), Positives = 105/221 (47%), Gaps = 22/221 (9%)

Query: 24  ASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVP-------GLPSDVTSVSAGHYHS 76
           + G  + ++G    G LG+        G  +  T  P       G+P  +  +SAG  HS
Sbjct: 154 SKGGELFAWGQNLHGQLGV--------GRKFPSTTTPQIVEHLAGVP--LAQISAGEAHS 203

Query: 77  LAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGD 136
           +A++ +G +++WG+N   QLG G  ES+   + P  +E LD   V      G  S+ +  
Sbjct: 204 MALSMSGNIYSWGKNEFGQLGLGHTESK---DYPSLIEALDNQEVEFLACGGSHSALLTQ 260

Query: 137 DGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTED-GKLFG 195
           DG L+ +G  K GQLG      E + P  V  L G ++ +++ G  H LA   D GK+F 
Sbjct: 261 DGLLFTFGAGKHGQLGHNSTQNE-LRPCLVAELVGNRVTQIACGRWHTLAYVSDLGKVFS 319

Query: 196 WGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIE 236
           +G   DG++GN G   +  PL   +  S E   E  +S  E
Sbjct: 320 FGSGKDGQLGNGGTRDQLIPLPVKVSSSEELKLETHTSEKE 360



 Score = 81.3 bits (199), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 80/281 (28%), Positives = 121/281 (43%), Gaps = 47/281 (16%)

Query: 66  VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAF 125
           +  ++ G YHSLA++  G ++AWG+N   QLG G      T   P+ VE L  V +    
Sbjct: 140 IIQITCGDYHSLALSKGGELFAWGQNLHGQLGVGRKFPSTT--TPQIVEHLAGVPLAQIS 197

Query: 126 ASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHAL 185
           A    S A+   G+++ WGK++ GQLGLG   ++   PS +EAL  +++  ++ G  H+ 
Sbjct: 198 AGEAHSMALSMSGNIYSWGKNEFGQLGLGHTESKD-YPSLIEALDNQEVEFLACGGSHSA 256

Query: 186 AQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEG 245
             T+DG LF +G    G++G+     E  P                         LV+E 
Sbjct: 257 LLTQDGLLFTFGAGKHGQLGHNSTQNELRPC------------------------LVAE- 291

Query: 246 MEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRN-GVLLSCGSNVYGQLGREKQDMG 304
                          + G  V  IACG  H+L    + G + S GS   GQLG       
Sbjct: 292 ---------------LVGNRVTQIACGRWHTLAYVSDLGKVFSFGSGKDGQLGNGGTRDQ 336

Query: 305 MFPVDINFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSW 345
           + P+ +    VS S  L       E     + GG + I+ W
Sbjct: 337 LIPLPVK---VSSSEELKLETHTSEKELIMIAGGNQSILLW 374



 Score = 46.6 bits (109), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 58/229 (25%), Positives = 101/229 (44%), Gaps = 42/229 (18%)

Query: 165 RVEALAGEK-IVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDR- 222
           R E++  EK I++++ G  H+LA ++ G+LF WG +  G++G +G+   S+     ++  
Sbjct: 130 RFESILQEKKIIQITCGDYHSLALSKGGELFAWGQNLHGQLG-VGRKFPSTTTPQIVEHL 188

Query: 223 -----SSESDQEISSSTIEKAQKLVSEG-----------MEKEKYMPIIWEPFLVEGV-- 264
                +  S  E  S  +  +  + S G            E + Y      P L+E +  
Sbjct: 189 AGVPLAQISAGEAHSMALSMSGNIYSWGKNEFGQLGLGHTESKDY------PSLIEALDN 242

Query: 265 -EVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDIN----FHPVSISS 319
            EV  +ACG  HS +L ++G+L + G+  +GQLG       + P  +          I+ 
Sbjct: 243 QEVEFLACGGSHSALLTQDGLLFTFGAGKHGQLGHNSTQNELRPCLVAELVGNRVTQIAC 302

Query: 320 GLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPDN--VPLVVE 366
           G  H+LA               + S+G  +  QLG  G  +  +PL V+
Sbjct: 303 GRWHTLA--------YVSDLGKVFSFGSGKDGQLGNGGTRDQLIPLPVK 343



 Score = 45.8 bits (107), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 36/119 (30%), Positives = 61/119 (51%), Gaps = 16/119 (13%)

Query: 260 LVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFH----PV 315
           +++  +++ I CG  HSL L + G L + G N++GQLG  ++        I  H    P+
Sbjct: 134 ILQEKKIIQITCGDYHSLALSKGGELFAWGQNLHGQLGVGRKFPSTTTPQIVEHLAGVPL 193

Query: 316 S-ISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQ--LGRMGPDNVPLVVEGLEGE 371
           + IS+G  HS+A+      +++G    I SWG N   Q  LG     + P ++E L+ +
Sbjct: 194 AQISAGEAHSMAL------SMSG---NIYSWGKNEFGQLGLGHTESKDYPSLIEALDNQ 243


>gi|443690304|gb|ELT92472.1| hypothetical protein CAPTEDRAFT_172844 [Capitella teleta]
          Length = 4817

 Score = 88.6 bits (218), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 88/331 (26%), Positives = 152/331 (45%), Gaps = 39/331 (11%)

Query: 29   VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDV---TSVSAGHYHSLAVTNNGAV 85
            + + G+ + G LGL  S     G+  +P ++  L   V    +V +G  H++A+T +G V
Sbjct: 2968 LFACGEATNGRLGLGIS----AGNVPQPRQLTSLSQYVIKKVAVHSGGRHAMALTVDGKV 3023

Query: 86   WAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGK 145
            ++WG  ++ +LG     SR   + P+ +E L    V      G  S+AI  +G L+ WG 
Sbjct: 3024 FSWGEGDDGKLGHF---SRMNCDKPRLIEALRSKRVRDIACGGSHSAAIISNGDLYTWGL 3080

Query: 146  SKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGW--GHALAQTEDGKLFGWGYSADGR 203
             + G+LG G + T+ + P  V+AL G+++++V+ G      LA T+ G ++ WG   DG 
Sbjct: 3081 GEYGRLGHGDNTTQ-LRPKLVKALEGQRVIQVALGSRDAQTLALTDSGTVYSWG---DGD 3136

Query: 204  IGNLGK-ALESSPLDSNIDRSS-------ESDQEISSSTIEKAQK---------LVSEGM 246
             G LG+   E   +   I+R +       E   + S +  +  Q           +  G 
Sbjct: 3137 FGKLGRGGSEGCSVPHPIERLNGVGVCQIECGAQFSLALTKSGQVWTWGKGDYFRLGHGT 3196

Query: 247  EKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMF 306
            +     P + E   ++G +V  +A G  H L +  NG + + G N +GQ G     +   
Sbjct: 3197 DAHVRKPQLVE--TLKGKKVTHVAVGALHCLSVLDNGQVYAWGDNDHGQQGNSTTTVNRK 3254

Query: 307  PVDIN----FHPVSISSGLGHSLAICEVRSS 333
            P  +          ++ G  HS+A C + SS
Sbjct: 3255 PALVQGLEGCKISRVACGSSHSIAWCTLDSS 3285



 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 64/197 (32%), Positives = 101/197 (51%), Gaps = 15/197 (7%)

Query: 23  SASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVS----AGHYHSLA 78
           +ASG  + ++G GS G LGL     G   D   P  V GL   VT V     +G   ++A
Sbjct: 546 TASG-ELFTWGRGSFGRLGL-----GSTEDILTPALVSGLLG-VTVVDVACGSGDAQTIA 598

Query: 79  VTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDG 138
           + + G+V++WG     +LGRG  E       PK V+ L  ++V   +     S+A+  +G
Sbjct: 599 LADTGSVYSWGDGEYGKLGRGGSEG---CKAPKLVDKLQGLDVTRVYCGPQYSAAVCKNG 655

Query: 139 SLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGY 198
           +++ WG  +  +LG G +      P +VE LAG+ +  +S G  H LA TE+G+L  WG 
Sbjct: 656 AVFTWGNGEGYKLGHGTE-EHVRFPRQVETLAGKHVTSLSLGSHHCLATTEEGELLSWGR 714

Query: 199 SADGRIGNLGKALESSP 215
           +  G++G     L++ P
Sbjct: 715 NDKGQLGEGHTGLKAEP 731



 Score = 79.3 bits (194), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 82/312 (26%), Positives = 137/312 (43%), Gaps = 61/312 (19%)

Query: 68   SVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFAS 127
            ++++G  H LA++  G V++WG   + +LG G   +R+  + P+ +E L    V    A 
Sbjct: 4027 AINSGGKHCLALSAEGEVYSWGEGEDGKLGHG---NRSPCDRPRAIESLRGKEVVDIAAG 4083

Query: 128  GVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHA--L 185
            G  S+ I   G L+ WGK + G+LG G D  +   P  V+AL G ++  V+ G G A  L
Sbjct: 4084 GAHSACITSTGELYSWGKGRYGRLGHG-DSEDQTKPKLVDALKGYRVTDVACGSGDAQTL 4142

Query: 186  AQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEG 245
              T+D  ++ WG   DG  G LG+                                 S+G
Sbjct: 4143 CITDDDSVWSWG---DGDYGKLGRG-------------------------------GSDG 4168

Query: 246  MEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGM 305
             +    +P+  +   ++G+ V+ + CG   S+ L ++G + + G   Y +LG   +D   
Sbjct: 4169 CK----VPMKIDA--LQGLGVIKVECGSQFSVALTKSGAVYTWGKGDYHRLGHGTEDHIR 4222

Query: 306  FPVDINF----HPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPDNV 361
             P           VSI+ G  H +A  +         A  + +WG N   QLG    + +
Sbjct: 4223 RPRRCTTLQGKKIVSIACGSLHCVACTD---------AGEVYTWGDNDEGQLGDGTTNAI 4273

Query: 362  --PLVVEGLEGE 371
              P +V  L+G+
Sbjct: 4274 QRPRLVAALQGK 4285



 Score = 72.8 bits (177), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 53/181 (29%), Positives = 90/181 (49%), Gaps = 12/181 (6%)

Query: 29   VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLP-SDVTSVS--AGHYHSLAVTNNGAV 85
            + S+G G  G LG      G   D  +P  V  L    VT V+  +G   +L +T++ +V
Sbjct: 4096 LYSWGKGRYGRLG-----HGDSEDQTKPKLVDALKGYRVTDVACGSGDAQTLCITDDDSV 4150

Query: 86   WAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGK 145
            W+WG  +  +LGRG  +       P +++ L  + V         S A+   G+++ WGK
Sbjct: 4151 WSWGDGDYGKLGRGGSDGCKV---PMKIDALQGLGVIKVECGSQFSVALTKSGAVYTWGK 4207

Query: 146  SKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIG 205
                +LG G +      P R   L G+KIV ++ G  H +A T+ G+++ WG + +G++G
Sbjct: 4208 GDYHRLGHGTE-DHIRRPRRCTTLQGKKIVSIACGSLHCVACTDAGEVYTWGDNDEGQLG 4266

Query: 206  N 206
            +
Sbjct: 4267 D 4267



 Score = 64.3 bits (155), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 81/300 (27%), Positives = 121/300 (40%), Gaps = 70/300 (23%)

Query: 85   VWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVS-SAIGDDGSLWVW 143
            V+ WG N++ QLG G   S+     P   E L  +  C     G  S   +  DG L+  
Sbjct: 2916 VFVWGLNDKDQLG-GPKGSKI--KTPGINETLSTLK-CVQIVGGSKSLFCVTQDGKLFAC 2971

Query: 144  GKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWG--HALAQTEDGKLFGWGYSAD 201
            G++  G+LGLG        P ++ +L+   I KV+   G  HA+A T DGK+F WG   D
Sbjct: 2972 GEATNGRLGLGISAGNVPQPRQLTSLSQYVIKKVAVHSGGRHAMALTVDGKVFSWGEGDD 3031

Query: 202  GRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLV 261
            G++G+  +         N D+                                   P L+
Sbjct: 3032 GKLGHFSRM--------NCDK-----------------------------------PRLI 3048

Query: 262  EGV---EVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDIN------F 312
            E +    V DIACG  HS  +  NG L + G   YG+LG       + P  +        
Sbjct: 3049 EALRSKRVRDIACGGSHSAAIISNGDLYTWGLGEYGRLGHGDNTTQLRPKLVKALEGQRV 3108

Query: 313  HPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPD--NVPLVVEGLEG 370
              V++ S    +LA+ +         +  + SWG     +LGR G +  +VP  +E L G
Sbjct: 3109 IQVALGSRDAQTLALTD---------SGTVYSWGDGDFGKLGRGGSEGCSVPHPIERLNG 3159



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 53/161 (32%), Positives = 76/161 (47%), Gaps = 12/161 (7%)

Query: 28   AVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPS-DVTSVSAGHYHSLAVTNNGAVW 86
            +V S+GDG  G LG      G       P ++  L    V  V  G   S+A+T +GAV+
Sbjct: 4149 SVWSWGDGDYGKLG-----RGGSDGCKVPMKIDALQGLGVIKVECGSQFSVALTKSGAVY 4203

Query: 87   AWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKS 146
             WG+ +  +LG G   +      P+R   L    + +     +   A  D G ++ WG +
Sbjct: 4204 TWGKGDYHRLGHG---TEDHIRRPRRCTTLQGKKIVSIACGSLHCVACTDAGEVYTWGDN 4260

Query: 147  KRGQLGLGKDITEAIV-PSRVEALAGEKIVKVSFGWGHALA 186
              GQLG G   T AI  P  V AL G+KI +V+ G  H+LA
Sbjct: 4261 DEGQLGDG--TTNAIQRPRLVAALQGKKINRVACGSAHSLA 4299



 Score = 61.6 bits (148), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 85/326 (26%), Positives = 138/326 (42%), Gaps = 55/326 (16%)

Query: 56  PTRVPGLPSD---VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKR 112
           PT +P LP+D   +  V+      L +   G V+    + E Q    ++   +T  D + 
Sbjct: 424 PTTIP-LPNDLDDIIQVACSSNSLLILLRTGRVYKMTNSAEPQ----SMHEISTLADIEI 478

Query: 113 VEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGE 172
           ++        AA + G    A+  +G ++ WG    G+LG G  +T    P  +  L G+
Sbjct: 479 IK-------LAAHSEGSHCLALTSEGDVYSWGNGDFGKLGHGDTVT-CDSPMLINELHGK 530

Query: 173 KIVKVSFGWGHALAQTEDGKLFGWGYSADGRIG------NLGKALESSPLD-SNIDRSSE 225
            +V V+ G  H+ A T  G+LF WG  + GR+G       L  AL S  L  + +D +  
Sbjct: 531 SVVNVACGSHHSAAITASGELFTWGRGSFGRLGLGSTEDILTPALVSGLLGVTVVDVACG 590

Query: 226 SDQEISSSTIEKAQ-------------KLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACG 272
           S     + TI  A              KL   G E  K   ++ +   ++G++V  + CG
Sbjct: 591 SG---DAQTIALADTGSVYSWGDGEYGKLGRGGSEGCKAPKLVDK---LQGLDVTRVYCG 644

Query: 273 FDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINF----HPVSISSGLGHSLAIC 328
             +S  + +NG + + G+    +LG   ++   FP  +      H  S+S G  H LA  
Sbjct: 645 PQYSAAVCKNGAVFTWGNGEGYKLGHGTEEHVRFPRQVETLAGKHVTSLSLGSHHCLATT 704

Query: 329 EVRSSNVTGGARGIVSWGWNRSSQLG 354
           E            ++SWG N   QLG
Sbjct: 705 E---------EGELLSWGRNDKGQLG 721



 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 73/301 (24%), Positives = 124/301 (41%), Gaps = 55/301 (18%)

Query: 77   LAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNV--CAAFASGVVSSAI 134
             ++T +G V A G     +LG G  +S AT   P  +E +  V +   A  + G    A+
Sbjct: 3982 FSITGDGKVCATGYGAGGRLGIGGTDSVAT---PTLIESIQHVFIRKVAINSGGKHCLAL 4038

Query: 135  GDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLF 194
              +G ++ WG+ + G+LG G + +    P  +E+L G+++V ++ G  H+   T  G+L+
Sbjct: 4039 SAEGEVYSWGEGEDGKLGHG-NRSPCDRPRAIESLRGKEVVDIAAGGAHSACITSTGELY 4097

Query: 195  GWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPI 254
             WG    GR+G+     ++ P                        KLV            
Sbjct: 4098 SWGKGRYGRLGHGDSEDQTKP------------------------KLVDA---------- 4123

Query: 255  IWEPFLVEGVEVVDIACGF--DHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINF 312
                  ++G  V D+ACG     +L +  +  + S G   YG+LGR   D    P+ I+ 
Sbjct: 4124 ------LKGYRVTDVACGSGDAQTLCITDDDSVWSWGDGDYGKLGRGGSDGCKVPMKID- 4176

Query: 313  HPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPDNV--PLVVEGLEG 370
                   GLG     C  + S     +  + +WG     +LG    D++  P     L+G
Sbjct: 4177 ----ALQGLGVIKVECGSQFSVALTKSGAVYTWGKGDYHRLGHGTEDHIRRPRRCTTLQG 4232

Query: 371  E 371
            +
Sbjct: 4233 K 4233



 Score = 48.1 bits (113), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 74/263 (28%), Positives = 109/263 (41%), Gaps = 42/263 (15%)

Query: 135  GDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLF 194
            G  G +W WG + RGQLG G +  +  +P   E LA  + V++  G     + T DGK+ 
Sbjct: 3933 GGSGQIWGWGHNHRGQLG-GVEGAKVKLPVSCETLATMRPVQLIGGEQTLFSITGDGKVC 3991

Query: 195  GWGYSADGRIGNLGKALESSP-LDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMP 253
              GY A GR+G  G    ++P L  +I         I+S      +  ++   E E Y  
Sbjct: 3992 ATGYGAGGRLGIGGTDSVATPTLIESIQHVFIRKVAINSG----GKHCLALSAEGEVYS- 4046

Query: 254  IIW-----------------EPFLVE---GVEVVDIACGFDHSLVLGRNGVLLSCGSNVY 293
              W                  P  +E   G EVVDIA G  HS  +   G L S G   Y
Sbjct: 4047 --WGEGEDGKLGHGNRSPCDRPRAIESLRGKEVVDIAAGGAHSACITSTGELYSWGKGRY 4104

Query: 294  GQLGREKQDMGMFPVDIN----FHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNR 349
            G+LG    +    P  ++    +    ++ G G +  +C     +V        SWG   
Sbjct: 4105 GRLGHGDSEDQTKPKLVDALKGYRVTDVACGSGDAQTLCITDDDSVW-------SWGDGD 4157

Query: 350  SSQLGRMGPD--NVPLVVEGLEG 370
              +LGR G D   VP+ ++ L+G
Sbjct: 4158 YGKLGRGGSDGCKVPMKIDALQG 4180



 Score = 37.7 bits (86), Expect = 9.2,   Method: Compositional matrix adjust.
 Identities = 48/215 (22%), Positives = 85/215 (39%), Gaps = 59/215 (27%)

Query: 166 VEALAGEKIVKVSFGW--GHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRS 223
           +  LA  +I+K++      H LA T +G ++ WG    G++G+       SP+       
Sbjct: 470 ISTLADIEIIKLAAHSEGSHCLALTSEGDVYSWGNGDFGKLGHGDTVTCDSPM------- 522

Query: 224 SESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNG 283
                            L++E                + G  VV++ACG  HS  +  +G
Sbjct: 523 -----------------LINE----------------LHGKSVVNVACGSHHSAAITASG 549

Query: 284 VLLSCGSNVYGQLGREKQDMGMFP------VDINFHPVSISSGLGHSLAICEVRSSNVTG 337
            L + G   +G+LG    +  + P      + +    V+  SG   ++A+ +  S     
Sbjct: 550 ELFTWGRGSFGRLGLGSTEDILTPALVSGLLGVTVVDVACGSGDAQTIALADTGS----- 604

Query: 338 GARGIVSWGWNRSSQLGRMGPD--NVPLVVEGLEG 370
               + SWG     +LGR G +    P +V+ L+G
Sbjct: 605 ----VYSWGDGEYGKLGRGGSEGCKAPKLVDKLQG 635


>gi|195586891|ref|XP_002083201.1| GD13608 [Drosophila simulans]
 gi|194195210|gb|EDX08786.1| GD13608 [Drosophila simulans]
          Length = 1058

 Score = 88.6 bits (218), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 93/356 (26%), Positives = 143/356 (40%), Gaps = 61/356 (17%)

Query: 24  ASGTAVVSFGDGSQGALGLPTSLTGVGGDAYE----PTRVPGLP-SDVTSVSAGHYHSLA 78
           ASG  +  +G  S G LGL       GG   E    P ++P  P + V  VS GH H+L 
Sbjct: 2   ASGKELYCWGSTSHGQLGL-------GGIEDEQILTPRQIPWTPDTAVQQVSCGHRHTLF 54

Query: 79  VTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDG 138
           +T  G V+A G N+  QLG      R     P+ +  L    +         S A+ D G
Sbjct: 55  LTATGKVYACGSNDYSQLGHDLPTKR-----PQLIPELQDYVIIQISCGSRHSLALSDWG 109

Query: 139 SLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGY 198
            +  WG +  GQLG   +     +P  V  L  + +V+++ G  H+LA T  G+L+ WG 
Sbjct: 110 QVLSWGDNDCGQLGHATEKEIVQLPKVVRQLVSKTVVQIACGNNHSLALTSCGELYSWGS 169

Query: 199 SADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEP 258
           +  G++G       +SP D      +  +  +  +T+                       
Sbjct: 170 NIYGQLG------VNSPND-----LTHCNYPLRLTTL----------------------- 195

Query: 259 FLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFHPVSIS 318
               G+ +  IACG +HS ++ ++G +   G N  GQLG   +    +P  +        
Sbjct: 196 ---LGIPLAAIACGGNHSFLISKSGAVFGWGRNNCGQLGLNDETNRAYPTQLK-----TL 247

Query: 319 SGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPDN--VPLVVEGLEGES 372
             LG   A C    S       G+ + G     QLG     N  +P +V  L G +
Sbjct: 248 RTLGVRFAACGDEFSVFLTNEGGVFTCGAGAYGQLGHGFSSNEMLPRMVMELMGST 303


>gi|405964700|gb|EKC30153.1| Serine/threonine-protein kinase Nek8 [Crassostrea gigas]
          Length = 774

 Score = 88.6 bits (218), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 77/249 (30%), Positives = 110/249 (44%), Gaps = 51/249 (20%)

Query: 56  PTRVPGLPS---DVTSVSAGHYHSLAVTNNGAVWAWGRNN--EVQLGRGALESRATWNDP 110
           P ++P LPS    VT VS G     AVT NG ++ W  +N     L  GA ES      P
Sbjct: 324 PVKLP-LPSSDTQVTQVSTGRTQKAAVTKNGRLFVWESSNVGTDTLIPGATESHTLTYVP 382

Query: 111 KRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGK--DITEAIVPSRVEA 168
           + +EG   VN+       + ++ + D G L  +G    G LG G   D+ +A +   VE 
Sbjct: 383 RYLEGQSGVNIQQVACGDLFTACLTDRGILMTFGSGVYGCLGHGNYNDVAQAKI---VED 439

Query: 169 LAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQ 228
           L G ++V+VS G  H LA T + ++F WG   +GR+G LG                  DQ
Sbjct: 440 LLGYEVVQVSCGASHVLAVTNEHEVFSWGRGDNGRLG-LG------------------DQ 480

Query: 229 EISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSC 288
           E  SS                   P++    + E +    + CG D S++L  +  LL C
Sbjct: 481 ESHSSP-----------------RPVV----IPEPLRPSSVHCGVDCSMILTLDNKLLCC 519

Query: 289 GSNVYGQLG 297
           GSN Y +L 
Sbjct: 520 GSNRYNKLA 528



 Score = 45.1 bits (105), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 37/120 (30%), Positives = 55/120 (45%), Gaps = 10/120 (8%)

Query: 66  VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAF 125
           V  V+ G  H+ AVT  G  + +G N   QLG     SR     P+ V+ + Q    A  
Sbjct: 561 VKGVAMGTSHTAAVTVEGQCYTFGTNQFGQLGNQTNNSR----QPQEVK-IAQTQKVAMV 615

Query: 126 ASG-VVSSAIGDDGSLWVWGKSKRGQLGLG-KDITEAIVPSRVEALAGEKIVKVSFGWGH 183
           A G   +  + D+G ++ +G   RG+LG   +D TE   P +V  +  +  V VS    H
Sbjct: 616 ACGDTFTVIVADEGEVYSFGNQSRGRLGRPEEDPTE---PGKVPFMGEDPFVVVSLSCSH 672


>gi|170050907|ref|XP_001861523.1| hect E3 ubiquitin ligase [Culex quinquefasciatus]
 gi|167872400|gb|EDS35783.1| hect E3 ubiquitin ligase [Culex quinquefasciatus]
          Length = 4784

 Score = 88.6 bits (218), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 99/372 (26%), Positives = 156/372 (41%), Gaps = 72/372 (19%)

Query: 11   HVNVLTSRIFMRSASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVT--- 67
            H++  +  +F+ S  G  + + G+G+ G LGL     G   +   P +VP L   V    
Sbjct: 2944 HISGGSKSLFIVSQDG-KLYACGEGTNGRLGL-----GHNNNVPTPRQVPILNQYVVKKV 2997

Query: 68   SVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFAS 127
            +V +G  H++A+T +G V++WG   + +LG G   +R T   PK +E L    +      
Sbjct: 2998 AVHSGGKHAMALTLDGKVFSWGEGEDGKLGHG---NRVTLEKPKLLESLRTKRIRDIACG 3054

Query: 128  GVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGW--GHAL 185
               S+AI   G L+ WG  + G+LG G + T+ + P  V AL G ++V+V+ G      L
Sbjct: 3055 SSHSAAITSSGELYTWGLGEYGRLGHGDNCTQ-LKPKLVTALQGHRVVQVACGSRDAQTL 3113

Query: 186  AQTEDGKLFGWGYSADGRIGNLGK-ALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSE 244
              TE+G +F WG   DG  G LG+   E   +   ++R                      
Sbjct: 3114 CLTEEGLVFSWG---DGDFGKLGRGGSEGCSVPHQVER---------------------- 3148

Query: 245  GMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMG 304
                            + GV VV I CG   SL L + G + + G   Y +LG       
Sbjct: 3149 ----------------LNGVGVVQIECGAQFSLALTKIGEVWTWGKGDYYRLGHGTDQHV 3192

Query: 305  MFPVDIN----FHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGP-- 358
              P  I        + ++ G  H LA+ +         +  + +WG N   Q G      
Sbjct: 3193 RKPTPIQGLRGKKVIHVAVGALHCLAVTD---------SGQVFAWGDNDHGQQGSGNTVV 3243

Query: 359  DNVPLVVEGLEG 370
            +  P +V GL+G
Sbjct: 3244 NKKPNLVLGLDG 3255



 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 62/173 (35%), Positives = 94/173 (54%), Gaps = 16/173 (9%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPS----DVTSVSAGHYHSLAVTNNGA 84
           + ++G G+ G LG      G   D + PT+V  L +    DV ++ +G  HS+AVT+ G 
Sbjct: 650 LFTWGRGTYGRLG-----HGNSDDKFVPTQVQALKAYKVVDV-ALGSGDAHSMAVTDGGL 703

Query: 85  VWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWG 144
           ++AWG  +  +LG G+         P ++EG+   +V   ++    S A+  DG+L+ WG
Sbjct: 704 LFAWGDGDFGKLGNGSCNGSPL---PVQIEGVS--SVARIYSGSQFSVALSYDGTLYSWG 758

Query: 145 KSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWG 197
           K   G+LG G     + VP  V AL G+KIV V+ G  H LA T  G+L+GWG
Sbjct: 759 KGHGGRLGHGNS-EHSNVPKLVHALEGKKIVDVAVGSAHCLALTSSGELYGWG 810



 Score = 84.3 bits (207), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 73/239 (30%), Positives = 112/239 (46%), Gaps = 28/239 (11%)

Query: 75  HSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAI 134
           H++A+++ G V++WG     +LG G   S+     P ++    QV   A +A    S+A+
Sbjct: 590 HAMALSSAGEVYSWGAGEGGRLGHGDTASKEV---PTKIALEKQVT--AIYAGASYSAAV 644

Query: 135 GDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWG--HALAQTEDGK 192
              G L+ WG+   G+LG G    +  VP++V+AL   K+V V+ G G  H++A T+ G 
Sbjct: 645 SSVGELFTWGRGTYGRLGHGNS-DDKFVPTQVQALKAYKVVDVALGSGDAHSMAVTDGGL 703

Query: 193 LFGWGYSADGRIGNLGK-ALESSPLDSNIDRSSESDQEISSSTIEKAQKL---------- 241
           LF WG   DG  G LG  +   SPL   I+  S   +  S S    A             
Sbjct: 704 LFAWG---DGDFGKLGNGSCNGSPLPVQIEGVSSVARIYSGSQFSVALSYDGTLYSWGKG 760

Query: 242 ----VSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQL 296
               +  G  +   +P +     +EG ++VD+A G  H L L  +G L   G N Y Q+
Sbjct: 761 HGGRLGHGNSEHSNVPKLVHA--LEGKKIVDVAVGSAHCLALTSSGELYGWGRNDYQQI 817



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 70/311 (22%), Positives = 122/311 (39%), Gaps = 82/311 (26%)

Query: 56   PTRVPGLPSDV---TSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKR 112
            PT V  L   +    +V++G  H LA++++G V++WG   + +LG G   +R +++ PK 
Sbjct: 4020 PTLVESLQHVIIKKVAVNSGGKHCLALSSDGEVFSWGEGEDGKLGHG---NRDSYDRPKL 4076

Query: 113  VEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITE------------- 159
            +E L  + V         S+ I   G +  WGK + G+LG G    +             
Sbjct: 4077 IEALSGIGVVDIACGSAHSACITSQGHVLTWGKGRYGRLGHGDSEDQLQPKRCVLRTTIM 4136

Query: 160  -------------------AIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSA 200
                               A  P ++E+LAG  ++KV  G   ++A T  G ++ WG   
Sbjct: 4137 CGVGVTAIMASLAEEVPMGARSPMKIESLAGLGVIKVECGSQFSVALTRSGSVYTWGKGD 4196

Query: 201  DGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFL 260
              R+G+            N D             + + +K+ +                 
Sbjct: 4197 YHRLGH-----------GNTDH------------VRRPKKVAA----------------- 4216

Query: 261  VEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINF----HPVS 316
            ++G +++ IA G  H +    +G + + G N  GQLG         P  +      H V 
Sbjct: 4217 LQGKKIISIATGSLHCVACSDSGEVFTWGDNDEGQLGDGTVTAIQRPRLVQSLQGKHIVK 4276

Query: 317  ISSGLGHSLAI 327
            +  G  H+LA+
Sbjct: 4277 VICGSAHTLAL 4287



 Score = 61.2 bits (147), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 82/307 (26%), Positives = 134/307 (43%), Gaps = 31/307 (10%)

Query: 85   VWAWGRNNEVQLG--RGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWV 142
            V  WG N++ QLG  +G+     T++    +  L  +++     S  +   +  DG L+ 
Sbjct: 2909 VLVWGLNDKEQLGGLKGSKVKLPTYSS--VLSQLKPIHISGGSKSLFI---VSQDGKLYA 2963

Query: 143  WGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWG--HALAQTEDGKLFGWGYSA 200
             G+   G+LGLG +      P +V  L    + KV+   G  HA+A T DGK+F WG   
Sbjct: 2964 CGEGTNGRLGLGHN-NNVPTPRQVPILNQYVVKKVAVHSGGKHAMALTLDGKVFSWGEGE 3022

Query: 201  DGRIGNLGK-ALESSPLDSNIDRSSESDQEISSS---TIEKAQKLVSEGMEKEKYM---- 252
            DG++G+  +  LE   L  ++      D    SS    I  + +L + G+ +   +    
Sbjct: 3023 DGKLGHGNRVTLEKPKLLESLRTKRIRDIACGSSHSAAITSSGELYTWGLGEYGRLGHGD 3082

Query: 253  -PIIWEPFLV---EGVEVVDIACGFD--HSLVLGRNGVLLSCGSNVYGQLGREKQDMGMF 306
                 +P LV   +G  VV +ACG     +L L   G++ S G   +G+LGR   +    
Sbjct: 3083 NCTQLKPKLVTALQGHRVVQVACGSRDAQTLCLTEEGLVFSWGDGDFGKLGRGGSEGCSV 3142

Query: 307  PVDINFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPDNV--PLV 364
            P     H V   +G+G     C  + S        + +WG     +LG     +V  P  
Sbjct: 3143 P-----HQVERLNGVGVVQIECGAQFSLALTKIGEVWTWGKGDYYRLGHGTDQHVRKPTP 3197

Query: 365  VEGLEGE 371
            ++GL G+
Sbjct: 3198 IQGLRGK 3204



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 78/312 (25%), Positives = 135/312 (43%), Gaps = 30/312 (9%)

Query: 69   VSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNV--CAAFA 126
            ++ G     AVT +G ++A G     +LG G  +S +T   P  VE L  V +   A  +
Sbjct: 3982 IAGGEQTLYAVTPDGKLYATGYGAGGRLGIGGTDSVST---PTLVESLQHVIIKKVAVNS 4038

Query: 127  SGVVSSAIGDDGSLWVWGKSKRGQLGLG-KDITEAIVPSRVEALAGEKIVKVSFGWGHAL 185
             G    A+  DG ++ WG+ + G+LG G +D  +   P  +EAL+G  +V ++ G  H+ 
Sbjct: 4039 GGKHCLALSSDGEVFSWGEGEDGKLGHGNRDSYDR--PKLIEALSGIGVVDIACGSAHSA 4096

Query: 186  AQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEG 245
              T  G +  WG    GR+G+     +  P      R       +    +      ++E 
Sbjct: 4097 CITSQGHVLTWGKGRYGRLGHGDSEDQLQP-----KRCVLRTTIMCGVGVTAIMASLAEE 4151

Query: 246  MEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGM 305
            +      P+  E   + G+ V+ + CG   S+ L R+G + + G   Y +LG    D   
Sbjct: 4152 VPMGARSPMKIES--LAGLGVIKVECGSQFSVALTRSGSVYTWGKGDYHRLGHGNTDHVR 4209

Query: 306  FPVDINF----HPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQL--GRMGPD 359
             P  +        +SI++G  H +A  +         +  + +WG N   QL  G +   
Sbjct: 4210 RPKKVAALQGKKIISIATGSLHCVACSD---------SGEVFTWGDNDEGQLGDGTVTAI 4260

Query: 360  NVPLVVEGLEGE 371
              P +V+ L+G+
Sbjct: 4261 QRPRLVQSLQGK 4272



 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 73/263 (27%), Positives = 107/263 (40%), Gaps = 56/263 (21%)

Query: 84   AVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVW 143
             ++ WG N+  QLG G   SR     P   E L  +             A+  DG L+  
Sbjct: 3945 TIFGWGHNHRGQLG-GLDGSRIKM--PTPCEALSLLRPIQIAGGEQTLYAVTPDGKLYAT 4001

Query: 144  GKSKRGQLGLGKDITEAI-VPSRVEALAGEKIVKVSFGWG--HALAQTEDGKLFGWGYSA 200
            G    G+LG+G   T+++  P+ VE+L    I KV+   G  H LA + DG++F WG   
Sbjct: 4002 GYGAGGRLGIGG--TDSVSTPTLVESLQHVIIKKVAVNSGGKHCLALSSDGEVFSWGEGE 4059

Query: 201  DGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFL 260
            DG++G+  +         + DR                                   P L
Sbjct: 4060 DGKLGHGNR--------DSYDR-----------------------------------PKL 4076

Query: 261  VE---GVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFHPVSI 317
            +E   G+ VVDIACG  HS  +   G +L+ G   YG+LG    +  + P        +I
Sbjct: 4077 IEALSGIGVVDIACGSAHSACITSQGHVLTWGKGRYGRLGHGDSEDQLQPKRCVLR-TTI 4135

Query: 318  SSGLGHSLAICEVRSSNVTGGAR 340
              G+G + AI    +  V  GAR
Sbjct: 4136 MCGVGVT-AIMASLAEEVPMGAR 4157


>gi|432959904|ref|XP_004086396.1| PREDICTED: LOW QUALITY PROTEIN: protein RCC2 homolog [Oryzias
           latipes]
          Length = 496

 Score = 88.6 bits (218), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 79/293 (26%), Positives = 130/293 (44%), Gaps = 32/293 (10%)

Query: 75  HSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAI 134
           HSL +T +G +W+WGRN++ QLG G  +       PK +E L +  + +A      +  +
Sbjct: 132 HSLLMTTDGKLWSWGRNDKGQLGHGDTKRIEA---PKLIEALAEQVIVSAACGRNHTLVL 188

Query: 135 GDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLF 194
            +DG+ + +G++K GQLG G      + P+ + +  G+ +VKVS G   ++     G L+
Sbjct: 189 TEDGTAYSFGENKLGQLGQGNQTDAVLSPAPI-SYNGQPLVKVSCGAEFSMVVDCKGNLY 247

Query: 195 GWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPI 254
            +G    G++G+            N D    +  +      E   + V+  +EK K   I
Sbjct: 248 SFGCPEYGQLGH------------NSDGKFIARAQRIEFDCELIPRRVAIFIEKSKDGQI 295

Query: 255 IWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFH- 313
           +  P +V    V D+ACG +H+LVL     + S G   YG+LG  +Q   M P  +    
Sbjct: 296 MPVPNVV----VRDVACGGNHTLVLDSQKRVFSWGFGGYGRLGHTEQKDEMVPRLVKLFD 351

Query: 314 -----PVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPDNV 361
                   I +G   S A+             G+  WG   +S+   M P  V
Sbjct: 352 FPGRGAAQIYAGYQCSFAVXXXXXXG------GLFFWGVTNTSRESTMYPKAV 398



 Score = 51.6 bits (122), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 50/175 (28%), Positives = 74/175 (42%), Gaps = 30/175 (17%)

Query: 66  VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNV-CAA 124
           + S + G  H+L +T +G  +++G N   QLG+G          P    G   V V C A
Sbjct: 175 IVSAACGRNHTLVLTEDGTAYSFGENKLGQLGQGNQTDAVLSPAPISYNGQPLVKVSCGA 234

Query: 125 FASGVVSSAIGDDGSLWVWGKSKRGQLGL---GKDITEA--------IVPSRVEALAGEK 173
             S VV       G+L+ +G  + GQLG    GK I  A        ++P RV A+  EK
Sbjct: 235 EFSMVVDC----KGNLYSFGCPEYGQLGHNSDGKFIARAQRIEFDCELIPRRV-AIFIEK 289

Query: 174 -------------IVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSP 215
                        +  V+ G  H L      ++F WG+   GR+G+  +  E  P
Sbjct: 290 SKDGQIMPVPNVVVRDVACGGNHTLVLDSQKRVFSWGFGGYGRLGHTEQKDEMVP 344


>gi|383319323|ref|YP_005380164.1| Alpha-tubulin suppressor and related RCC1 domain-containing protein
           [Methanocella conradii HZ254]
 gi|379320693|gb|AFC99645.1| Alpha-tubulin suppressor and related RCC1 domain-containing protein
           [Methanocella conradii HZ254]
          Length = 476

 Score = 88.6 bits (218), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 104/373 (27%), Positives = 164/373 (43%), Gaps = 73/373 (19%)

Query: 3   LLKSVVHNHVN-----VLTSRIFMRSASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPT 57
           LLK V+ N +       + +   M   S   V ++GD   G LG+ T+  G      EP 
Sbjct: 70  LLKPVMINGLEGVKDVAVGNNFSMALKSDGTVWTWGDNRYGQLGIGTADDG---RHPEPV 126

Query: 58  RVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRG-------ALESRATWN-- 108
           +VPGL ++V ++SA    ++A+ ++G VWAWG N+  QLG G        L     W+  
Sbjct: 127 QVPGL-TNVIAISADFQLAMALKDDGTVWAWGSNSYGQLGDGKPIDIPPPLTYSKEWDMQ 185

Query: 109 ---DPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSR 165
               P  V GLD V   +  ASG  + A+ DDG++W WG++        K+   ++  S 
Sbjct: 186 NKPSPVMVSGLDHV--VSIDASGWQAFAVKDDGTVWGWGQNTCTLGEWSKNNENSLYTST 243

Query: 166 VEALAGEKIVKVSFGWG--HALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRS 223
              + G   VK +   G   A+A  +DG ++ WG    G +GN    ++S P   ++D+ 
Sbjct: 244 PVQIVGLTDVKKACCLGGLSAVALKKDGTVWAWGEDRYGVLGN--GEVKSYP---DVDK- 297

Query: 224 SESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGV-EVVDIACGFDHSLVLGRN 282
                                          ++ P  V G+ ++VDI+CG  HSL L  +
Sbjct: 298 -------------------------------VYNPIQVIGLTDIVDISCGGAHSLALKDD 326

Query: 283 GVLLSCGSNVYGQLGREKQDMGMFPVDINFHPV-SISSGLGHSLAICEVRSSNVTGGARG 341
           G + + G N  GQLG    +    P  +      +IS+G   ++AI   +  NV      
Sbjct: 327 GTVWAWGKNYAGQLGDSTNESRGTPCRVPIPAAKAISAGYYSNVAI--DKDDNVW----- 379

Query: 342 IVSWGWNRSSQLG 354
             +WG +   QLG
Sbjct: 380 --AWGMDDYGQLG 390



 Score = 77.8 bits (190), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 87/346 (25%), Positives = 153/346 (44%), Gaps = 68/346 (19%)

Query: 66  VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAF 125
           V  V+ G +H++A+ ++G VWAWG N   + G G+ +       P  + GL+ V   A  
Sbjct: 31  VKKVAVGLFHTVALADDGTVWAWGSNTYGECGEGSSDDILL--KPVMINGLEGVKDVAVG 88

Query: 126 ASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHAL 185
            +   S A+  DG++W WG ++ GQLG+G    +   P  V+      ++ +S  +  A+
Sbjct: 89  NN--FSMALKSDGTVWTWGDNRYGQLGIGT-ADDGRHPEPVQVPGLTNVIAISADFQLAM 145

Query: 186 AQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQE-----ISSSTIEKAQK 240
           A  +DG ++ WG ++ G++G+ GK ++  P    +  S E D +     +  S ++    
Sbjct: 146 ALKDDGTVWAWGSNSYGQLGD-GKPIDIPP---PLTYSKEWDMQNKPSPVMVSGLDHVVS 201

Query: 241 LVSEGME--KEKYMPIIW-----------------------EPFLVEGVEVVDIAC--GF 273
           + + G +    K    +W                        P  + G+  V  AC  G 
Sbjct: 202 IDASGWQAFAVKDDGTVWGWGQNTCTLGEWSKNNENSLYTSTPVQIVGLTDVKKACCLGG 261

Query: 274 DHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFP-VDINFHP---------VSISSGLGH 323
             ++ L ++G + + G + YG LG    ++  +P VD  ++P         V IS G  H
Sbjct: 262 LSAVALKKDGTVWAWGEDRYGVLGN--GEVKSYPDVDKVYNPIQVIGLTDIVDISCGGAH 319

Query: 324 SLAICEVRSSNVTGGARGIVSWGWNRSSQLG------RMGPDNVPL 363
           SLA+ +  +         + +WG N + QLG      R  P  VP+
Sbjct: 320 SLALKDDGT---------VWAWGKNYAGQLGDSTNESRGTPCRVPI 356



 Score = 69.3 bits (168), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 43/102 (42%), Positives = 56/102 (54%), Gaps = 7/102 (6%)

Query: 54  YEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRV 113
           Y P +V GL +D+  +S G  HSLA+ ++G VWAWG+N   QLG    ESR T   P RV
Sbjct: 299 YNPIQVIGL-TDIVDISCGGAHSLALKDDGTVWAWGKNYAGQLGDSTNESRGT---PCRV 354

Query: 114 EGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGK 155
                  + A + S V   AI  D ++W WG    GQLG G+
Sbjct: 355 PIPAAKAISAGYYSNV---AIDKDDNVWAWGMDDYGQLGDGE 393



 Score = 61.6 bits (148), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 46/154 (29%), Positives = 76/154 (49%), Gaps = 9/154 (5%)

Query: 56  PTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWN---DPKR 112
           P ++ GL     +   G   ++A+  +G VWAWG +    LG G ++S    +   +P +
Sbjct: 244 PVQIVGLTDVKKACCLGGLSAVALKKDGTVWAWGEDRYGVLGNGEVKSYPDVDKVYNPIQ 303

Query: 113 VEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGE 172
           V GL   ++      G  S A+ DDG++W WGK+  GQLG   + +    P RV   A +
Sbjct: 304 VIGL--TDIVDISCGGAHSLALKDDGTVWAWGKNYAGQLGDSTNESRG-TPCRVPIPAAK 360

Query: 173 KIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGN 206
            I   S G+   +A  +D  ++ WG    G++G+
Sbjct: 361 AI---SAGYYSNVAIDKDDNVWAWGMDDYGQLGD 391


>gi|357520083|ref|XP_003630330.1| RCC1 and BTB domain-containing protein [Medicago truncatula]
 gi|355524352|gb|AET04806.1| RCC1 and BTB domain-containing protein [Medicago truncatula]
          Length = 279

 Score = 88.6 bits (218), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 63/186 (33%), Positives = 94/186 (50%), Gaps = 11/186 (5%)

Query: 22  RSASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPS-DVTSVSAGHYHSLAVT 80
           RS SG  V S+G G  G LG      G   D + P  +  L    +  +S G  H LAVT
Sbjct: 79  RSKSGKDVYSWGWGDFGRLG-----HGDPSDLFIPHPIRALQGLRIKQISCGDCHCLAVT 133

Query: 81  NNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSL 140
               V +WGRN   +LG G  +       P+++   + + +    A    S AI +DG L
Sbjct: 134 MENKVLSWGRNQNGELGLGTTKDSHV---PQKILAFEGIRIKMVAAGAEHSVAITEDGDL 190

Query: 141 WVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSA 200
           + WG  + G LGLG D  + ++P +V  + G+KIV VS GW H ++ +  G L+  G+S 
Sbjct: 191 YGWGWGRYGNLGLG-DTNDRLIPEKVN-IDGDKIVMVSCGWRHTISISSSGGLYTHGWSK 248

Query: 201 DGRIGN 206
            G++G+
Sbjct: 249 YGQLGH 254



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 82/311 (26%), Positives = 129/311 (41%), Gaps = 57/311 (18%)

Query: 63  PSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVC 122
           P  V  +SAG  H++A+     V +WGR  + QLG G  + R         +G D V+V 
Sbjct: 11  PPHVLLISAGASHTVALLTGNVVCSWGRGEDGQLGHGDTDDRLLPTKLSAFDGQDIVSVT 70

Query: 123 AAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWG 182
                 V  S  G D   W WG    G+LG G D ++  +P  + AL G +I ++S G  
Sbjct: 71  CGADYTVARSKSGKDVYSWGWGDF--GRLGHG-DPSDLFIPHPIRALQGLRIKQISCGDC 127

Query: 183 HALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLV 242
           H LA T + K+  WG + +G +G                                     
Sbjct: 128 HCLAVTMENKVLSWGRNQNGELG------------------------------------- 150

Query: 243 SEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQD 302
             G  K+ ++P     F  EG+ +  +A G +HS+ +  +G L   G   YG LG    +
Sbjct: 151 -LGTTKDSHVPQKILAF--EGIRIKMVAAGAEHSVAITEDGDLYGWGWGRYGNLGLGDTN 207

Query: 303 MGMFPVDINF---HPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPD 359
             + P  +N      V +S G  H+++I           + G+ + GW++  QLG    +
Sbjct: 208 DRLIPEKVNIDGDKIVMVSCGWRHTISISS---------SGGLYTHGWSKYGQLGHGDFE 258

Query: 360 N--VPLVVEGL 368
           +  VP  V+ L
Sbjct: 259 DCLVPRKVQAL 269



 Score = 82.8 bits (203), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 77/285 (27%), Positives = 129/285 (45%), Gaps = 52/285 (18%)

Query: 25  SGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLP-SDVTSVSAGHYHSLAVTNNG 83
           +G  V S+G G  G LG      G   D   PT++      D+ SV+ G  +++A + +G
Sbjct: 29  TGNVVCSWGRGEDGQLG-----HGDTDDRLLPTKLSAFDGQDIVSVTCGADYTVARSKSG 83

Query: 84  A-VWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWV 142
             V++WG  +  +LG G          P  +  L  + +           A+  +  +  
Sbjct: 84  KDVYSWGWGDFGRLGHGDPSDLFI---PHPIRALQGLRIKQISCGDCHCLAVTMENKVLS 140

Query: 143 WGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADG 202
           WG+++ G+LGLG    ++ VP ++ A  G +I  V+ G  H++A TEDG L+GWG+   G
Sbjct: 141 WGRNQNGELGLGT-TKDSHVPQKILAFEGIRIKMVAAGAEHSVAITEDGDLYGWGW---G 196

Query: 203 RIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVE 262
           R GNLG        D+N DR                               +I E   ++
Sbjct: 197 RYGNLGLG------DTN-DR-------------------------------LIPEKVNID 218

Query: 263 GVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFP 307
           G ++V ++CG+ H++ +  +G L + G + YGQLG    +  + P
Sbjct: 219 GDKIVMVSCGWRHTISISSSGGLYTHGWSKYGQLGHGDFEDCLVP 263


>gi|348567198|ref|XP_003469388.1| PREDICTED: X-linked retinitis pigmentosa GTPase regulator-like
           [Cavia porcellus]
          Length = 780

 Score = 88.6 bits (218), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 87/282 (30%), Positives = 127/282 (45%), Gaps = 64/282 (22%)

Query: 27  TAVVS-------FGDGSQGALGLPTSLTGVGGDAYEPTRVPGL-PSDVTSVSAGHYHSLA 78
           TAVV+       FG  + G LGL     G   D  +PT V  L P  V   + G  H+L 
Sbjct: 47  TAVVTGNNKLYMFGSNNWGQLGL-----GSKSDVKKPTCVKALKPEKVQFAACGRNHTLI 101

Query: 79  VTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGL-DQVNVCAAFASGVVSSAIGDD 137
           +T  G V+A G NNE QLG G  E R T++   R+     + N+    A    S+A+ +D
Sbjct: 102 LTVVGNVYAAGGNNEGQLGLGDTEERNTFH---RISFFTSEHNIKQLSAGSNTSAALSED 158

Query: 138 GSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWG 197
           G L++WG +  GQ+GL  D+    VP +V    G+ I  +S G+ H+   T DG+L+ +G
Sbjct: 159 GRLFMWGDNSEGQIGLN-DVISVCVPHQVN--IGKPISWISCGYYHSAFVTMDGELYTFG 215

Query: 198 YSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWE 257
               G++G L K L                             L++              
Sbjct: 216 EPESGKLG-LPKEL-----------------------------LINHRT----------- 234

Query: 258 PFLVEGV--EVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLG 297
           P LV G+  +V+ +ACG  H++VL    V  + G   +GQLG
Sbjct: 235 PQLVAGIPEKVIQVACGGGHTVVLTEKAV-YTFGLGQFGQLG 275



 Score = 64.3 bits (155), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 50/181 (27%), Positives = 88/181 (48%), Gaps = 12/181 (6%)

Query: 33  GDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNN 92
           GD S+G +GL   ++        P +V  +   ++ +S G+YHS  VT +G ++ +G   
Sbjct: 165 GDNSEGQIGLNDVIS-----VCVPHQV-NIGKPISWISCGYYHSAFVTMDGELYTFGEPE 218

Query: 93  EVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLG 152
             +LG    E       P+ V G+ +  +  A   G   + +  + +++ +G  + GQLG
Sbjct: 219 SGKLGLPK-ELLINHRTPQLVAGIPEKVIQVACGGG--HTVVLTEKAVYTFGLGQFGQLG 275

Query: 153 LGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALE 212
           LG    E + P  +E +  +KI  +S G  H    ++ G ++ +G   DGR G LG  LE
Sbjct: 276 LGTFCFETLEPKVIEQIKNQKITYISCGENHTALISDIGLMYTFG---DGRHGKLGLGLE 332

Query: 213 S 213
           +
Sbjct: 333 N 333



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 73/296 (24%), Positives = 117/296 (39%), Gaps = 70/296 (23%)

Query: 69  VSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASG 128
           +S G  H+  VT N  ++ +G NN  QLG G   S++    P  V+ L    V  A    
Sbjct: 40  LSCGDEHTAVVTGNNKLYMFGSNNWGQLGLG---SKSDVKKPTCVKALKPEKVQFAACGR 96

Query: 129 VVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVK-VSFGWGHALAQ 187
             +  +   G+++  G +  GQLGLG D  E     R+     E  +K +S G   + A 
Sbjct: 97  NHTLILTVVGNVYAAGGNNEGQLGLG-DTEERNTFHRISFFTSEHNIKQLSAGSNTSAAL 155

Query: 188 TEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGME 247
           +EDG+LF WG +++G+IG         P   NI +                         
Sbjct: 156 SEDGRLFMWGDNSEGQIGLNDVISVCVPHQVNIGK------------------------- 190

Query: 248 KEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLG---------R 298
                PI W            I+CG+ HS  +  +G L + G    G+LG         R
Sbjct: 191 -----PISW------------ISCGYYHSAFVTMDGELYTFGEPESGKLGLPKELLINHR 233

Query: 299 EKQDMGMFPVDINFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLG 354
             Q +   P  +    + ++ G GH++ + E          + + ++G  +  QLG
Sbjct: 234 TPQLVAGIPEKV----IQVACGGGHTVVLTE----------KAVYTFGLGQFGQLG 275



 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 36/126 (28%), Positives = 58/126 (46%), Gaps = 6/126 (4%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAW 88
           + +FG+   G LGLP  L     +   P  V G+P  V  V+ G  H++ +T   AV+ +
Sbjct: 211 LYTFGEPESGKLGLPKELL---INHRTPQLVAGIPEKVIQVACGGGHTVVLTEK-AVYTF 266

Query: 89  GRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKR 148
           G     QLG G         +PK +E +    +         ++ I D G ++ +G  + 
Sbjct: 267 GLGQFGQLGLGTFCFETL--EPKVIEQIKNQKITYISCGENHTALISDIGLMYTFGDGRH 324

Query: 149 GQLGLG 154
           G+LGLG
Sbjct: 325 GKLGLG 330


>gi|345323388|ref|XP_001508293.2| PREDICTED: probable E3 ubiquitin-protein ligase HERC4
           [Ornithorhynchus anatinus]
          Length = 1006

 Score = 88.6 bits (218), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 63/248 (25%), Positives = 113/248 (45%), Gaps = 43/248 (17%)

Query: 52  DAYEPTRVPGLPS-DVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDP 110
           D+ E  +V  L + ++ +VS G  H+LA+ + G V+AWG + + QLG    E       P
Sbjct: 20  DSQEREQVVALDAQNIVAVSCGDAHTLALNDKGQVYAWGLDTDGQLGLPGTEE--CIRVP 77

Query: 111 KRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALA 170
           + ++ L  + +         S A+     ++ WG++K GQLGLG +  +   P  +++L 
Sbjct: 78  RNIKSLSDIQIVQVSCGYYHSLALSKGSEVFSWGQNKYGQLGLGFEFKKQTSPQLIKSLL 137

Query: 171 GEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEI 230
           G   ++++ G  H+   T  G +FGWG +  G++G          L+             
Sbjct: 138 GIPFMQIAAGGAHSFVLTLSGAIFGWGRNKFGQLG----------LND------------ 175

Query: 231 SSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGS 290
                           E ++Y+P + +   +   ++V I CG DH+  L + G + + G+
Sbjct: 176 ----------------ENDRYVPNLLKS--LRSQKIVYICCGEDHTAALTKEGGVFTFGA 217

Query: 291 NVYGQLGR 298
             YGQLG 
Sbjct: 218 GGYGQLGH 225



 Score = 84.3 bits (207), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 59/188 (31%), Positives = 97/188 (51%), Gaps = 8/188 (4%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPS-DVTSVSAGHYHSLAVTNNGAVWA 87
           V ++G  + G LGLP    G       P  +  L    +  VS G+YHSLA++    V++
Sbjct: 54  VYAWGLDTDGQLGLP----GTEECIRVPRNIKSLSDIQIVQVSCGYYHSLALSKGSEVFS 109

Query: 88  WGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSK 147
           WG+N   QLG G    + T   P+ ++ L  +      A G  S  +   G+++ WG++K
Sbjct: 110 WGQNKYGQLGLGFEFKKQT--SPQLIKSLLGIPFMQIAAGGAHSFVLTLSGAIFGWGRNK 167

Query: 148 RGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNL 207
            GQLGL  D  +  VP+ +++L  +KIV +  G  H  A T++G +F +G    G++G+ 
Sbjct: 168 FGQLGLN-DENDRYVPNLLKSLRSQKIVYICCGEDHTAALTKEGGVFTFGAGGYGQLGHN 226

Query: 208 GKALESSP 215
             + E +P
Sbjct: 227 STSHEINP 234



 Score = 65.5 bits (158), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 55/203 (27%), Positives = 84/203 (41%), Gaps = 41/203 (20%)

Query: 107 WNDPKR--VEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPS 164
           W+  +R  V  LD  N+ A       + A+ D G ++ WG    GQLGL        VP 
Sbjct: 19  WDSQEREQVVALDAQNIVAVSCGDAHTLALNDKGQVYAWGLDTDGQLGLPGTEECIRVPR 78

Query: 165 RVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSS 224
            +++L+  +IV+VS G+ H+LA ++  ++F WG     + G LG   E         +  
Sbjct: 79  NIKSLSDIQIVQVSCGYYHSLALSKGSEVFSWG---QNKYGQLGLGFEF--------KKQ 127

Query: 225 ESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGV 284
            S Q I S                            + G+  + IA G  HS VL  +G 
Sbjct: 128 TSPQLIKS----------------------------LLGIPFMQIAAGGAHSFVLTLSGA 159

Query: 285 LLSCGSNVYGQLGREKQDMGMFP 307
           +   G N +GQLG   ++    P
Sbjct: 160 IFGWGRNKFGQLGLNDENDRYVP 182



 Score = 54.7 bits (130), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 50/195 (25%), Positives = 78/195 (40%), Gaps = 53/195 (27%)

Query: 165 RVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSS 224
           +V AL  + IV VS G  H LA  + G+++ WG   DG++G  G   E   +  NI   S
Sbjct: 26  QVVALDAQNIVAVSCGDAHTLALNDKGQVYAWGLDTDGQLGLPGTE-ECIRVPRNIKSLS 84

Query: 225 ESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGV 284
           +                                      +++V ++CG+ HSL L +   
Sbjct: 85  D--------------------------------------IQIVQVSCGYYHSLALSKGSE 106

Query: 285 LLSCGSNVYGQLG-----REKQDMGMFPVDINFHPVSISSGLGHSLAICEVRSSNVTGGA 339
           + S G N YGQLG     +++    +    +    + I++G  HS  +          GA
Sbjct: 107 VFSWGQNKYGQLGLGFEFKKQTSPQLIKSLLGIPFMQIAAGGAHSFVL-------TLSGA 159

Query: 340 RGIVSWGWNRSSQLG 354
             I  WG N+  QLG
Sbjct: 160 --IFGWGRNKFGQLG 172


>gi|307168816|gb|EFN61765.1| RCC1 and BTB domain-containing protein 1 [Camponotus floridanus]
          Length = 538

 Score = 88.6 bits (218), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 69/212 (32%), Positives = 113/212 (53%), Gaps = 21/212 (9%)

Query: 11  HVNVLTSRIFMRSASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSD-VTSV 69
           HV  LT +  + S    +    G+G+    GL   L  +      PT   GL    +  V
Sbjct: 88  HVLALTEKGEVYSWGHNSYCELGNGTCNQ-GLTPILVNI------PTLGAGLNMKCIVDV 140

Query: 70  SAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVE----GLDQVNV-CAA 124
           + G +HSLA+T  G V+AWG+NN  Q+G     ++ +   P++V     G   V++ C  
Sbjct: 141 ACGSHHSLALTEEGEVYAWGQNNCGQVGSNISTNQGS---PRQVTSNLAGKKIVHISCGQ 197

Query: 125 FASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHA 184
            +S VV+    D+G ++ WG +  GQLG+G  + + + PSRV +L G  I+KV+ G+ H 
Sbjct: 198 TSSMVVT----DNGEVYGWGYNGVGQLGIGNYVNQ-MTPSRVGSLIGVVIIKVACGYAHT 252

Query: 185 LAQTEDGKLFGWGYSADGRIGNLGKALESSPL 216
           LA +++GKL+ WG ++ G++G   K    +P+
Sbjct: 253 LALSDEGKLYVWGGNSYGQLGIGNKTNACNPV 284



 Score = 84.7 bits (208), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 83/308 (26%), Positives = 129/308 (41%), Gaps = 60/308 (19%)

Query: 17  SRIFMRSASGT----AVVSFGDGSQGALGLPTSLTGVGG--DAYE---PTRVPGL-PSDV 66
           S+I M    GT    A++   D S    GL  ++ G  G  DA+    P ++  L   D+
Sbjct: 21  SQIHMVMVYGTLGNEALLVMKDKS--VYGLGNNIAGCLGISDAHSTLYPKKIEVLCDKDI 78

Query: 67  TSVSAGH-YHSLAVTNNGAVWAWGRNNEVQLGRGALESRAT---WNDPKRVEGLDQVNVC 122
            + + G   H LA+T  G V++WG N+  +LG G      T    N P    GL+   + 
Sbjct: 79  KTFACGSGPHVLALTEKGEVYSWGHNSYCELGNGTCNQGLTPILVNIPTLGAGLNMKCIV 138

Query: 123 AAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWG 182
                   S A+ ++G ++ WG++  GQ+G      +         LAG+KIV +S G  
Sbjct: 139 DVACGSHHSLALTEEGEVYAWGQNNCGQVGSNISTNQGSPRQVTSNLAGKKIVHISCGQT 198

Query: 183 HALAQTEDGKLFGWGYSADGR--IGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQK 240
            ++  T++G+++GWGY+  G+  IGN    +  S + S I                    
Sbjct: 199 SSMVVTDNGEVYGWGYNGVGQLGIGNYVNQMTPSRVGSLI-------------------- 238

Query: 241 LVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREK 300
                                 GV ++ +ACG+ H+L L   G L   G N YGQLG   
Sbjct: 239 ----------------------GVVIIKVACGYAHTLALSDEGKLYVWGGNSYGQLGIGN 276

Query: 301 QDMGMFPV 308
           +     PV
Sbjct: 277 KTNACNPV 284



 Score = 58.5 bits (140), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 73/289 (25%), Positives = 121/289 (41%), Gaps = 61/289 (21%)

Query: 76  SLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNV-CAAFASGVVSSAI 134
           +L V  + +V+  G N    LG     S      PK++E L   ++   A  SG    A+
Sbjct: 36  ALLVMKDKSVYGLGNNIAGCLGISDAHSTLY---PKKIEVLCDKDIKTFACGSGPHVLAL 92

Query: 135 GDDGSLWVWGKSKRGQLGLG---KDITEAIV--PSRVEALAGEKIVKVSFGWGHALAQTE 189
            + G ++ WG +   +LG G   + +T  +V  P+    L  + IV V+ G  H+LA TE
Sbjct: 93  TEKGEVYSWGHNSYCELGNGTCNQGLTPILVNIPTLGAGLNMKCIVDVACGSHHSLALTE 152

Query: 190 DGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKE 249
           +G+++ WG +  G++G            SNI  +  S ++++S+                
Sbjct: 153 EGEVYAWGQNNCGQVG------------SNISTNQGSPRQVTSN---------------- 184

Query: 250 KYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVD 309
                      + G ++V I+CG   S+V+  NG +   G N  GQLG       M P  
Sbjct: 185 -----------LAGKKIVHISCGQTSSMVVTDNGEVYGWGYNGVGQLGIGNYVNQMTPSR 233

Query: 310 ----INFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLG 354
               I    + ++ G  H+LA+ +            +  WG N   QLG
Sbjct: 234 VGSLIGVVIIKVACGYAHTLALSD---------EGKLYVWGGNSYGQLG 273



 Score = 43.9 bits (102), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 31/97 (31%), Positives = 54/97 (55%), Gaps = 6/97 (6%)

Query: 56  PTRVPGLPSDVT-SVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRV- 113
           P+RV  L   V   V+ G+ H+LA+++ G ++ WG N+  QLG G   ++    +P  V 
Sbjct: 231 PSRVGSLIGVVIIKVACGYAHTLALSDEGKLYVWGGNSYGQLGIG---NKTNACNPVLVT 287

Query: 114 EGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQ 150
             + +++  AA     +S+A+G  G +++WG   RGQ
Sbjct: 288 HEMGRISDIAALHYNHISTAVGVGGRVYMWGNC-RGQ 323


>gi|343492420|ref|ZP_08730787.1| regulator of chromosome condensation RCC1 [Vibrio nigripulchritudo
           ATCC 27043]
 gi|342827205|gb|EGU61599.1| regulator of chromosome condensation RCC1 [Vibrio nigripulchritudo
           ATCC 27043]
          Length = 395

 Score = 88.6 bits (218), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 93/362 (25%), Positives = 152/362 (41%), Gaps = 44/362 (12%)

Query: 23  SASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVP-----GLPSD--VTSVSAGHYH 75
           +A G   +++ DG+    G  TS     G+      +P      LP    V  + A    
Sbjct: 29  AAGGAHTIAYKDGTLYTWGRNTSNQAGNGETSRTVDLPTAIDLALPRRIGVIDIKANLNF 88

Query: 76  SLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIG 135
           +L + + G VW WG N E Q+G G  +       P +VE LD+V +    A    + A+ 
Sbjct: 89  TLLLDSAGDVWVWGTNREGQIGNGTKDKVM---KPTKVEALDRVFITDIGAGQRHALAVS 145

Query: 136 DDGSLWVWGKSKRGQLGLGKD-----ITEAIVPSRVEALAGEKIVKVSFGWGHALAQTED 190
             G +W WG +  GQLG   D         + P+RV  L  + IV V  G   +LA T  
Sbjct: 146 KRGHVWAWGNNAAGQLGFETDANTPATNNVLTPTRVPEL--QDIVDVEGGGSFSLAVTRR 203

Query: 191 GKLFGWGYSADGRIGNLGKALE---SSPLDSNIDRSSESDQE---------ISSSTIEKA 238
           GKL  WG + +G++G     LE   +    S I++  ++               S +   
Sbjct: 204 GKLLSWGSNDNGQLGVDPDVLEFRHTPEAVSGINKRVKAAAAGKDHAAALFYDGSVMAWG 263

Query: 239 QKLVSE---GMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQ 295
           Q    +   G +++ + P    P    GV++  I+   + +L + +   L S G ++ G 
Sbjct: 264 QNFSGQLGIGSDEDTHTPT---PVKTNGVKMRSISASGNFTLAVSKQRNLYSWGQDLLGS 320

Query: 296 LGREKQDMGMFPVDINF--HPVSIS-SGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQ 352
           LG    D  + P  + F   PV  + +GLGH++ I +        G+    ++G N   Q
Sbjct: 321 LGTGPSDTNV-PTKVEFFTQPVKKAVNGLGHTIVITQEED-----GSEAFWTFGLNSFDQ 374

Query: 353 LG 354
           +G
Sbjct: 375 IG 376


>gi|383319179|ref|YP_005380020.1| Alpha-tubulin suppressor and related RCC1 domain-containing protein
           [Methanocella conradii HZ254]
 gi|379320549|gb|AFC99501.1| Alpha-tubulin suppressor and related RCC1 domain-containing protein
           [Methanocella conradii HZ254]
          Length = 453

 Score = 88.2 bits (217), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 84/316 (26%), Positives = 148/316 (46%), Gaps = 45/316 (14%)

Query: 64  SDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCA 123
           +DV++VSAG++  L + N+G VW WG N   +LG G  E  +   +P +V GL   ++ A
Sbjct: 80  TDVSAVSAGNFFVLFLKNDGTVWGWGDNEFGELGDGTNEETSL--EPVQVAGLH--DIIA 135

Query: 124 AFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGH 183
              SG    A+  DG++W WG +  GQLG+G        P +V  L+  KI  +S G+  
Sbjct: 136 ISTSGTHCLALRRDGTVWAWGWNVAGQLGIGTTSEGEYTPVQVPGLSDIKI--ISAGYQC 193

Query: 184 ALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSE--SDQEISSSTIEKAQKL 241
           ++A  +DG+L+ WG +  G++G+        P+   ID   +  + +   +  ++K   +
Sbjct: 194 SMAIDKDGRLWAWGSNGRGKLGDGTTITRLYPIQVPIDDVIDVAASEGAHTLALKKDGTV 253

Query: 242 VSEGMEKEKYMPII-----------WEPFLVEGVE-VVDIACGFDHSLVLGRNGVLLSCG 289
            + G  +E  +  +             P +V+GV+ VV ++    +S+ L  +G +   G
Sbjct: 254 WAWGWNQENELGFVSGSSVNSVKECHTPVMVKGVDSVVSVSTTDSNSIALRSDGTVWIWG 313

Query: 290 SNVYGQLGR----------EKQDMGMFPVDINFHPVSISSGLGHSLAICEVRSSNVTGGA 339
           +   G+LG            +Q  G+  V      V+I+ G  H +A+          G 
Sbjct: 314 NGQQGRLGNGALYGADSATPQQVPGLENV------VAIAGGSAHIMAMT---------GD 358

Query: 340 RGIVSWGWNRSSQLGR 355
             + +WG N+  Q+G 
Sbjct: 359 GSVYAWGDNQGGQIGN 374



 Score = 81.3 bits (199), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 61/181 (33%), Positives = 97/181 (53%), Gaps = 16/181 (8%)

Query: 31  SFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGH-YHSLAVTNNGAVWAWG 89
           ++G   +G LG  T++T +      P +VP    DV  V+A    H+LA+  +G VWAWG
Sbjct: 205 AWGSNGRGKLGDGTTITRL-----YPIQVP--IDDVIDVAASEGAHTLALKKDGTVWAWG 257

Query: 90  RNNEVQLGR---GALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKS 146
            N E +LG     ++ S    + P  V+G+D V   +   S   S A+  DG++W+WG  
Sbjct: 258 WNQENELGFVSGSSVNSVKECHTPVMVKGVDSVVSVSTTDSN--SIALRSDGTVWIWGNG 315

Query: 147 KRGQLGLGKDI-TEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIG 205
           ++G+LG G     ++  P +V  L  E +V ++ G  H +A T DG ++ WG +  G+IG
Sbjct: 316 QQGRLGNGALYGADSATPQQVPGL--ENVVAIAGGSAHIMAMTGDGSVYAWGDNQGGQIG 373

Query: 206 N 206
           N
Sbjct: 374 N 374



 Score = 70.5 bits (171), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 77/318 (24%), Positives = 141/318 (44%), Gaps = 71/318 (22%)

Query: 64  SDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCA 123
           S V ++ AG + SLA+ ++G V AWG        RG    +++   P  V   D   V A
Sbjct: 30  SKVVAIDAGGHLSLALKDDGTVMAWGTMMGFLPNRGKPFFQSS--TPVVVNITD---VSA 84

Query: 124 AFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGH 183
             A       + +DG++W WG ++ G+LG G +   ++ P +V  L    I+ +S    H
Sbjct: 85  VSAGNFFVLFLKNDGTVWGWGDNEFGELGDGTNEETSLEPVQVAGL--HDIIAISTSGTH 142

Query: 184 ALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVS 243
            LA   DG ++ WG++  G++G              I  +SE +                
Sbjct: 143 CLALRRDGTVWAWGWNVAGQLG--------------IGTTSEGE---------------- 172

Query: 244 EGMEKEKYMPIIWEPFLVEGV-EVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQD 302
                       + P  V G+ ++  I+ G+  S+ + ++G L + GSN  G+LG     
Sbjct: 173 ------------YTPVQVPGLSDIKIISAGYQCSMAIDKDGRLWAWGSNGRGKLGDGTTI 220

Query: 303 MGMFPVDI---NFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPD 359
             ++P+ +   +   V+ S G  H+LA+ +  +         + +WGWN+ ++LG +   
Sbjct: 221 TRLYPIQVPIDDVIDVAASEG-AHTLALKKDGT---------VWAWGWNQENELGFVSGS 270

Query: 360 NV--------PLVVEGLE 369
           +V        P++V+G++
Sbjct: 271 SVNSVKECHTPVMVKGVD 288



 Score = 46.6 bits (109), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 28/72 (38%), Positives = 43/72 (59%), Gaps = 4/72 (5%)

Query: 32  FGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRN 91
           +G+G QG LG   +    G D+  P +VPGL  +V +++ G  H +A+T +G+V+AWG N
Sbjct: 312 WGNGQQGRLG---NGALYGADSATPQQVPGL-ENVVAIAGGSAHIMAMTGDGSVYAWGDN 367

Query: 92  NEVQLGRGALES 103
              Q+G G   S
Sbjct: 368 QGGQIGNGEFLS 379


>gi|395770833|ref|ZP_10451348.1| hypothetical protein Saci8_13710 [Streptomyces acidiscabies 84-104]
          Length = 393

 Score = 88.2 bits (217), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 69/201 (34%), Positives = 105/201 (52%), Gaps = 19/201 (9%)

Query: 20  FMRSASGTAVVSFGDGSQGALGLPTSLTGVGGDAYE--PTRVPGLPSDVTSVSAGHYHSL 77
           F  + +   V ++G  S G LG        GG+  +  PT VP L ++V  ++AG  H+L
Sbjct: 79  FTLARTDKTVKAWGHNSAGQLG-------NGGNTNQAVPTTVPRL-TNVKDIAAGGKHAL 130

Query: 78  AVTNNGAVWAWGRNNEVQLGRGAL-ESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGD 136
           A+  +G V++WG N+  QLG     +SR     P RV+G+ +    +A      S A+ +
Sbjct: 131 ALDTSGQVYSWGDNSYGQLGNNRTGDSRTV---PDRVQGMPKAKQISAGCD--FSLALLE 185

Query: 137 DGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGW 196
           +G ++ WG+   GQLG G   T + VP +V  L  E IVK+  G  HALA T D  +  W
Sbjct: 186 NGKVYAWGRGIHGQLGTGNRATSS-VPRQVTGL--EDIVKIDAGCYHALAITADNTVKSW 242

Query: 197 GYSADGRIGNLGKALESSPLD 217
           GY+  G++GN      + P+D
Sbjct: 243 GYNLYGQLGNSATKSSTVPVD 263



 Score = 70.5 bits (171), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 68/200 (34%), Positives = 98/200 (49%), Gaps = 22/200 (11%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYE-PTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWA 87
           V S+GD S G LG   +     GD+   P RV G+P     +SAG   SLA+  NG V+A
Sbjct: 138 VYSWGDNSYGQLGNNRT-----GDSRTVPDRVQGMPK-AKQISAGCDFSLALLENGKVYA 191

Query: 88  WGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSK 147
           WGR    QLG G   +RAT + P++V GL+  ++    A    + AI  D ++  WG + 
Sbjct: 192 WGRGIHGQLGTG---NRATSSVPRQVTGLE--DIVKIDAGCYHALAITADNTVKSWGYNL 246

Query: 148 RGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNL 207
            GQLG       + VP  V+ L    +  +  G  H  A T D  ++GWG +  G++   
Sbjct: 247 YGQLG-NSATKSSTVPVDVDWLT--DVSDIEAGAWHNYAMTSDSHVYGWGNNQYGQL--- 300

Query: 208 GKALESSPLD-SNIDRSSES 226
              LE    D  NI R++ +
Sbjct: 301 ---LEGDQADGDNISRTNRT 317



 Score = 64.7 bits (156), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 78/288 (27%), Positives = 123/288 (42%), Gaps = 32/288 (11%)

Query: 82  NGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVS----SAIGDD 137
           N  V +WG     QLG G L    +   P  V  L + +V    A G  S    +    D
Sbjct: 29  NPTVLSWGAGRTGQLGNGTLSDSLS---PASVTSLFRGDVDQMSAGGTSSADSFTLARTD 85

Query: 138 GSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWG 197
            ++  WG +  GQLG G +  +A VP+ V  L   K   ++ G  HALA    G+++ WG
Sbjct: 86  KTVKAWGHNSAGQLGNGGNTNQA-VPTTVPRLTNVK--DIAAGGKHALALDTSGQVYSWG 142

Query: 198 YSADGRIGNLGKALESSPLDSNIDRSSESDQ-----EISSSTIEKAQKLV----SEGMEK 248
            ++ G++GN  +  +S  +   +    ++ Q     + S + +E  +         G   
Sbjct: 143 DNSYGQLGN-NRTGDSRTVPDRVQGMPKAKQISAGCDFSLALLENGKVYAWGRGIHGQLG 201

Query: 249 EKYMPIIWEPFLVEGVE-VVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFP 307
                    P  V G+E +V I  G  H+L +  +  + S G N+YGQLG         P
Sbjct: 202 TGNRATSSVPRQVTGLEDIVKIDAGCYHALAITADNTVKSWGYNLYGQLGNSATKSSTVP 261

Query: 308 VDINF--HPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQL 353
           VD+++      I +G  H+ A+     S+V G       WG N+  QL
Sbjct: 262 VDVDWLTDVSDIEAGAWHNYAMTS--DSHVYG-------WGNNQYGQL 300



 Score = 60.8 bits (146), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 58/183 (31%), Positives = 90/183 (49%), Gaps = 17/183 (9%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAW 88
           V ++G G  G LG     TG    +  P +V GL  D+  + AG YH+LA+T +  V +W
Sbjct: 189 VYAWGRGIHGQLG-----TGNRATSSVPRQVTGL-EDIVKIDAGCYHALAITADNTVKSW 242

Query: 89  GRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKR 148
           G N   QLG  A +S      P  V+ L  V+   A A    + A+  D  ++ WG ++ 
Sbjct: 243 GYNLYGQLGNSATKSSTV---PVDVDWLTDVSDIEAGA--WHNYAMTSDSHVYGWGNNQY 297

Query: 149 GQL-----GLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGR 203
           GQL       G +I+     + VE    E +  ++ G  H +A T D  +F WG +++G+
Sbjct: 298 GQLLEGDQADGDNISRTNRTAPVEIPRLEGVQHLAAGARHGVAVTAD-DVFTWGNNSEGQ 356

Query: 204 IGN 206
           +GN
Sbjct: 357 LGN 359



 Score = 51.2 bits (121), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 64/237 (27%), Positives = 97/237 (40%), Gaps = 63/237 (26%)

Query: 143 WGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGW-----GHALAQTEDGKLFGWG 197
           WG  + GQLG G  +++++ P+ V +L    + ++S G         LA+T D  +  WG
Sbjct: 35  WGAGRTGQLGNGT-LSDSLSPASVTSLFRGDVDQMSAGGTSSADSFTLART-DKTVKAWG 92

Query: 198 YSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWE 257
           +++ G++GN G   ++ P                 +T+                      
Sbjct: 93  HNSAGQLGNGGNTNQAVP-----------------TTV---------------------- 113

Query: 258 PFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQ-DMGMFPVDINFHPVS 316
           P L     V DIA G  H+L L  +G + S G N YGQLG  +  D    P  +   P +
Sbjct: 114 PRLTN---VKDIAAGGKHALALDTSGQVYSWGDNSYGQLGNNRTGDSRTVPDRVQGMPKA 170

Query: 317 --ISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQL--GRMGPDNVPLVVEGLE 369
             IS+G   SLA+ E            + +WG     QL  G     +VP  V GLE
Sbjct: 171 KQISAGCDFSLALLENGK---------VYAWGRGIHGQLGTGNRATSSVPRQVTGLE 218



 Score = 42.4 bits (98), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 34/102 (33%), Positives = 51/102 (50%), Gaps = 10/102 (9%)

Query: 64  SDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALE-----SRATWNDPKRVEGLDQ 118
           +DV+ + AG +H+ A+T++  V+ WG N   QL  G        SR     P  +  L+ 
Sbjct: 268 TDVSDIEAGAWHNYAMTSDSHVYGWGNNQYGQLLEGDQADGDNISRTNRTAPVEIPRLEG 327

Query: 119 VNVCAAFA-SGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITE 159
           V   AA A  GV  +A  DD  ++ WG +  GQLG G  ++ 
Sbjct: 328 VQHLAAGARHGVAVTA--DD--VFTWGNNSEGQLGNGTTVSR 365


>gi|77403863|tpg|DAA05713.1| TPA_exp: RPGR ORF15 isoform [Homo sapiens]
          Length = 1152

 Score = 88.2 bits (217), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 79/267 (29%), Positives = 124/267 (46%), Gaps = 51/267 (19%)

Query: 32  FGDGSQGALGLPTSLTGVGGDAYEPTRVPGL-PSDVTSVSAGHYHSLAVTNNGAVWAWGR 90
           FG  + G LGL     G      +PT V  L P  V   + G  H+L  T  G V+A G 
Sbjct: 59  FGSNNWGQLGL-----GSKSAISKPTCVKALKPEKVKLAACGRNHTLVSTEGGNVYATGG 113

Query: 91  NNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQ 150
           NNE QLG G  E R T++         ++   +A ++   S+A+ +DG L++WG +  GQ
Sbjct: 114 NNEGQLGLGDTEERNTFHVISFFTSEHKIKQLSAGSN--TSAALTEDGRLFMWGDNSEGQ 171

Query: 151 LGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKA 210
           +GL K+++   VP +V    G+ +  +S G+ H+   T DG+L+ +G   +G++G   + 
Sbjct: 172 IGL-KNVSNVCVPQQV--TIGKPVSWISCGYYHSAFVTTDGELYVFGEPENGKLGLPNQL 228

Query: 211 LESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIA 270
           L +                       +  +LVSE  EK                 V+ +A
Sbjct: 229 LGN----------------------HRTPQLVSEIPEK-----------------VIQVA 249

Query: 271 CGFDHSLVLGRNGVLLSCGSNVYGQLG 297
           CG +H++VL  N V  + G   +GQLG
Sbjct: 250 CGGEHTVVLTENAV-YTFGLGQFGQLG 275



 Score = 62.8 bits (151), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 74/294 (25%), Positives = 120/294 (40%), Gaps = 66/294 (22%)

Query: 69  VSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGL--DQVNVCAAFA 126
           +S G  HS  VT N  ++ +G NN  QLG G   S++  + P  V+ L  ++V + A   
Sbjct: 40  LSCGDEHSAVVTGNNKLYMFGSNNWGQLGLG---SKSAISKPTCVKALKPEKVKLAACGR 96

Query: 127 SGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGE-KIVKVSFGWGHAL 185
           +  + S  G  G+++  G +  GQLGLG D  E      +     E KI ++S G   + 
Sbjct: 97  NHTLVSTEG--GNVYATGGNNEGQLGLG-DTEERNTFHVISFFTSEHKIKQLSAGSNTSA 153

Query: 186 AQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEG 245
           A TEDG+LF WG +++G+IG    +    P    I +                       
Sbjct: 154 ALTEDGRLFMWGDNSEGQIGLKNVSNVCVPQQVTIGK----------------------- 190

Query: 246 MEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMG- 304
                  P+ W            I+CG+ HS  +  +G L   G    G+LG   Q +G 
Sbjct: 191 -------PVSW------------ISCGYYHSAFVTTDGELYVFGEPENGKLGLPNQLLGN 231

Query: 305 ----MFPVDINFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLG 354
                   +I    + ++ G  H++ + E            + ++G  +  QLG
Sbjct: 232 HRTPQLVSEIPEKVIQVACGGEHTVVLTE----------NAVYTFGLGQFGQLG 275



 Score = 57.8 bits (138), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 56/199 (28%), Positives = 95/199 (47%), Gaps = 28/199 (14%)

Query: 18  RIFMRSASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVP-GLPSDVTSVSAGHYHS 76
           R+FM          +GD S+G +GL         +   P +V  G P  V+ +S G+YHS
Sbjct: 160 RLFM----------WGDNSEGQIGLKNV-----SNVCVPQQVTIGKP--VSWISCGYYHS 202

Query: 77  LAVTNNGAVWAWGRNNEVQLGRGALESRATWND--PKRVEGLDQVNVCAAFASGVVSSAI 134
             VT +G ++ +G   E + G+  L ++   N   P+ V  + +  +    A G   + +
Sbjct: 203 AFVTTDGELYVFG---EPENGKLGLPNQLLGNHRTPQLVSEIPEKVI--QVACGGEHTVV 257

Query: 135 GDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLF 194
             + +++ +G  + GQLGLG  + E   P  +E +  + I  +S G  H    T+ G ++
Sbjct: 258 LTENAVYTFGLGQFGQLGLGTFLFETSEPKVIENIRDQTISYISCGENHTALITDIGLMY 317

Query: 195 GWGYSADGRIGNLGKALES 213
            +G   DGR G LG  LE+
Sbjct: 318 TFG---DGRHGKLGLGLEN 333


>gi|418670270|ref|ZP_13231642.1| chromosome condensation regulator RCC1 repeat protein [Leptospira
           interrogans serovar Pyrogenes str. 2006006960]
 gi|410754041|gb|EKR15698.1| chromosome condensation regulator RCC1 repeat protein [Leptospira
           interrogans serovar Pyrogenes str. 2006006960]
          Length = 506

 Score = 88.2 bits (217), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 89/295 (30%), Positives = 137/295 (46%), Gaps = 30/295 (10%)

Query: 29  VVSFGDGSQGALGLPTSLTGVG-----GDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNG 83
           V ++G  S+G LG+  + T        G+   PT +PG+ +D    + G  H+L + ++G
Sbjct: 199 VYTWGANSKGQLGIGNNNTDPARASDPGNRQPPTEIPGI-NDAVMGAYGFNHALVLKSDG 257

Query: 84  AVWAWGRNNEVQLGRGA--LESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLW 141
            V A+G+NN  QLG G   L   +  ++P  V  L   NV    A    S+A+ ++G ++
Sbjct: 258 TVVAFGQNNVGQLGNGENNLNRNSFSSNPVNVVQLR--NVIQVIAGSEHSAALTENGEVY 315

Query: 142 VWGKSKRGQLGLG---KDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGY 198
           +WGK++ G LG G      T   VP +VE L+  KI +++ G  H LA T DGK++ WG 
Sbjct: 316 IWGKNQYGNLGNGIISPANTVQSVPVKVEGLS--KIKQIANGRDHILALTSDGKIYSWGL 373

Query: 199 SADGRIGNLGKALESSPLDSNIDRSSESDQEI-----SSSTIEKAQKLVSEGME------ 247
           +A G++G  G              + +    I      S  I K  ++   G        
Sbjct: 374 NASGQLGIGGNGNPPPTPIPTQILNIQDVASIWAGGTQSFAILKNGEVKGWGANGNMASL 433

Query: 248 --KEKYMPIIWEPF-LVEGVE-VVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGR 298
              E     ++EP   V G++ VV   CG  H+  L  NG +   G N  G LGR
Sbjct: 434 ALGESNTQKVYEPNKAVVGIDNVVHFGCGATHNFALLGNGEIYGWGWNFKGSLGR 488



 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 82/315 (26%), Positives = 126/315 (40%), Gaps = 78/315 (24%)

Query: 67  TSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRG-----ALESRATWNDPKRVEGLDQVNV 121
           T +SAG  HS  + N G ++  GRNN  QLG G      +  R    DP R       ++
Sbjct: 129 TKLSAGGAHSGFLIN-GELYTVGRNNFGQLGTGISTGDGINDRIVKVDPIR-------DI 180

Query: 122 CAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSR----------VEALAG 171
            +   +   S AI  +G ++ WG + +GQLG+G + T+   P+R           E    
Sbjct: 181 FSIHFNQNNSMAISQNGRVYTWGANSKGQLGIGNNNTD---PARASDPGNRQPPTEIPGI 237

Query: 172 EKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEIS 231
              V  ++G+ HAL    DG +  +G +  G++GN          ++N++R+S S   ++
Sbjct: 238 NDAVMGAYGFNHALVLKSDGTVVAFGQNNVGQLGN---------GENNLNRNSFSSNPVN 288

Query: 232 SSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSN 291
                                       +V+   V+ +  G +HS  L  NG +   G N
Sbjct: 289 ----------------------------VVQLRNVIQVIAGSEHSAALTENGEVYIWGKN 320

Query: 292 VYGQLGR----EKQDMGMFPVDIN--FHPVSISSGLGHSLAICEVRSSNVTGGARGIVSW 345
            YG LG         +   PV +        I++G  H LA+              I SW
Sbjct: 321 QYGNLGNGIISPANTVQSVPVKVEGLSKIKQIANGRDHILALTSDGK---------IYSW 371

Query: 346 GWNRSSQLGRMGPDN 360
           G N S QLG  G  N
Sbjct: 372 GLNASGQLGIGGNGN 386



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 65/243 (26%), Positives = 107/243 (44%), Gaps = 51/243 (20%)

Query: 65  DVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALES---RAT----WNDPKRVEGL- 116
           D+ S+     +S+A++ NG V+ WG N++ QLG G   +   RA+       P  + G+ 
Sbjct: 179 DIFSIHFNQNNSMAISQNGRVYTWGANSKGQLGIGNNNTDPARASDPGNRQPPTEIPGIN 238

Query: 117 DQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDIT--EAIVPSRVEALAGEKI 174
           D V     F   +V   +  DG++  +G++  GQLG G++     +   + V  +    +
Sbjct: 239 DAVMGAYGFNHALV---LKSDGTVVAFGQNNVGQLGNGENNLNRNSFSSNPVNVVQLRNV 295

Query: 175 VKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSST 234
           ++V  G  H+ A TE+G+++ WG     + GNLG  +                  IS + 
Sbjct: 296 IQVIAGSEHSAALTENGEVYIWG---KNQYGNLGNGI------------------ISPAN 334

Query: 235 IEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYG 294
             ++  +  EG+ K K                  IA G DH L L  +G + S G N  G
Sbjct: 335 TVQSVPVKVEGLSKIK-----------------QIANGRDHILALTSDGKIYSWGLNASG 377

Query: 295 QLG 297
           QLG
Sbjct: 378 QLG 380


>gi|340507220|gb|EGR33218.1| hypothetical protein IMG5_058940 [Ichthyophthirius multifiliis]
          Length = 660

 Score = 88.2 bits (217), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 101/359 (28%), Positives = 153/359 (42%), Gaps = 60/359 (16%)

Query: 23  SASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEP-TRVPGLPSDVTSVSAGHYHSLAVTN 81
           S++G   V  G    G LGL  +LT    + ++  T + G+   V  V+ G YH+LA+T 
Sbjct: 109 SSNGDLYVC-GSALHGKLGLE-NLTMANINKFQILTALKGIK--VLQVACGDYHTLALTE 164

Query: 82  NGAVWAWGRNNEVQLG-RGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSL 140
           N  V+AWG     ++G RG          P  +  L    V         S AI + G +
Sbjct: 165 NDQVYAWGGTLYKKVGQRGG--------KPGPIHQLTNKGVTYIDCGDFHSVAITNQGDI 216

Query: 141 WVWG----KSKRGQLGLG--KDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLF 194
           + WG       +GQLGLG  KDI    +P +++    +K++KVS G  H +A  +D +L+
Sbjct: 217 YTWGGGGQFQNKGQLGLGHMKDIE---IPEQIQFFKNKKVIKVSCGQFHTMALIDDNQLY 273

Query: 195 GWGYSADGRIGNLGKALESSPLDS----------NIDRSSESDQEISSSTIEKAQKLV-- 242
           GWG    G +G+ GK L    L            N +   + D +IS         L+  
Sbjct: 274 GWGAGELGELGS-GKVLYFLYLLIILILKKYITINKNNYYKKDPQISDIKCGGHHTLILL 332

Query: 243 ------SEGM-----------EKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVL 285
                 S G                   ++W    +   +++ IA G++HSLVL     +
Sbjct: 333 NIGYVYSTGYGSYGQLGLKTTNNHCEFQLVW---TLTKKKIIKIAAGWNHSLVLTDTNDV 389

Query: 286 LSCGSNVYGQLGREKQDMGMFPVDINF----HPVSISSGLGHSLAICEVRSSNVTGGAR 340
            SCG N +GQLG   ++       I+     + V IS+G  HS AI E +     G  R
Sbjct: 390 FSCGYNAWGQLGLGDEESRTLFTHISALAGKNVVEISAGGSHSWAILEQQFPEKPGNYR 448


>gi|46249868|gb|AAH68834.1| LOC398469 protein [Xenopus laevis]
          Length = 530

 Score = 88.2 bits (217), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 51/156 (32%), Positives = 91/156 (58%), Gaps = 5/156 (3%)

Query: 62  LPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNV 121
           L   V  V+ G +HS+A+T++G V++WG NN  Q+G G   +++    P++V    Q  V
Sbjct: 126 LSKKVIQVACGSHHSMALTSDGEVFSWGYNNCGQVGSGTTANQSV---PRKVASSLQSKV 182

Query: 122 CAAFASGVVSS-AIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFG 180
             + ++G  SS A+ D+G ++ WG +  GQLGLG +    ++P R+       I++V  G
Sbjct: 183 VVSISAGQTSSMALTDNGHVYGWGYNGTGQLGLG-NTGNQLMPCRLVFAQPICIIQVVLG 241

Query: 181 WGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPL 216
           + H LA ++ G L+ WG ++ G++G   K+ ++ P+
Sbjct: 242 YAHTLALSDQGVLYAWGANSHGQLGIGNKSNQTVPV 277



 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 70/274 (25%), Positives = 122/274 (44%), Gaps = 23/274 (8%)

Query: 76  SLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVC-AAFASGVVSSAI 134
           ++  T N  V+ +G N    LG G  +S      P+R++ L    +   ++ SG      
Sbjct: 34  AIYTTQNNEVFVFGMNISSCLGTGDNQSTIM---PRRLDVLCGKKIVDLSYGSGPHILLC 90

Query: 135 GDDGSLWVWGKSKRGQLGLGKDITEAIVPSRV-EALAGEKIVKVSFGWGHALAQTEDGKL 193
            +DG ++ WG +   QLG G  I +   P +V   L  +K+++V+ G  H++A T DG++
Sbjct: 91  NEDGEVYSWGHNGYSQLGNGNTI-QGTTPVQVCMELLSKKVIQVACGSHHSMALTSDGEV 149

Query: 194 FGWGYSADGRIGNLGKALESSP------LDSNIDRSSESDQEISSSTIEKAQKL------ 241
           F WGY+  G++G+   A +S P      L S +  S  + Q  S +  +           
Sbjct: 150 FSWGYNNCGQVGSGTTANQSVPRKVASSLQSKVVVSISAGQTSSMALTDNGHVYGWGYNG 209

Query: 242 ---VSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGR 298
              +  G    + MP        + + ++ +  G+ H+L L   GVL + G+N +GQLG 
Sbjct: 210 TGQLGLGNTGNQLMPC--RLVFAQPICIIQVVLGYAHTLALSDQGVLYAWGANSHGQLGI 267

Query: 299 EKQDMGMFPVDINFHPVSISSGLGHSLAICEVRS 332
             +     PV +  +   +     HS  I   +S
Sbjct: 268 GNKSNQTVPVKVGTNERMVEVTACHSTNISAAKS 301


>gi|78190492|ref|NP_001030025.1| X-linked retinitis pigmentosa GTPase regulator isoform C [Homo
           sapiens]
          Length = 1152

 Score = 88.2 bits (217), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 79/267 (29%), Positives = 124/267 (46%), Gaps = 51/267 (19%)

Query: 32  FGDGSQGALGLPTSLTGVGGDAYEPTRVPGL-PSDVTSVSAGHYHSLAVTNNGAVWAWGR 90
           FG  + G LGL     G      +PT V  L P  V   + G  H+L  T  G V+A G 
Sbjct: 59  FGSNNWGQLGL-----GSKSAISKPTCVKALKPEKVKLAACGRNHTLVSTEGGNVYATGG 113

Query: 91  NNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQ 150
           NNE QLG G  E R T++         ++   +A ++   S+A+ +DG L++WG +  GQ
Sbjct: 114 NNEGQLGLGDTEERNTFHVISFFTSEHKIKQLSAGSN--TSAALTEDGRLFMWGDNSEGQ 171

Query: 151 LGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKA 210
           +GL K+++   VP +V    G+ +  +S G+ H+   T DG+L+ +G   +G++G   + 
Sbjct: 172 IGL-KNVSNVCVPQQV--TIGKPVSWISCGYYHSAFVTTDGELYVFGEPENGKLGLPNQL 228

Query: 211 LESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIA 270
           L +                       +  +LVSE  EK                 V+ +A
Sbjct: 229 LGN----------------------HRTPQLVSEIPEK-----------------VIQVA 249

Query: 271 CGFDHSLVLGRNGVLLSCGSNVYGQLG 297
           CG +H++VL  N V  + G   +GQLG
Sbjct: 250 CGGEHTVVLTENAV-YTFGLGQFGQLG 275



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 74/294 (25%), Positives = 120/294 (40%), Gaps = 66/294 (22%)

Query: 69  VSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGL--DQVNVCAAFA 126
           +S G  HS  VT N  ++ +G NN  QLG G   S++  + P  V+ L  ++V + A   
Sbjct: 40  LSCGDEHSAVVTGNNKLYMFGSNNWGQLGLG---SKSAISKPTCVKALKPEKVKLAACGR 96

Query: 127 SGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGE-KIVKVSFGWGHAL 185
           +  + S  G  G+++  G +  GQLGLG D  E      +     E KI ++S G   + 
Sbjct: 97  NHTLVSTEG--GNVYATGGNNEGQLGLG-DTEERNTFHVISFFTSEHKIKQLSAGSNTSA 153

Query: 186 AQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEG 245
           A TEDG+LF WG +++G+IG    +    P    I +                       
Sbjct: 154 ALTEDGRLFMWGDNSEGQIGLKNVSNVCVPQQVTIGK----------------------- 190

Query: 246 MEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMG- 304
                  P+ W            I+CG+ HS  +  +G L   G    G+LG   Q +G 
Sbjct: 191 -------PVSW------------ISCGYYHSAFVTTDGELYVFGEPENGKLGLPNQLLGN 231

Query: 305 ----MFPVDINFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLG 354
                   +I    + ++ G  H++ + E            + ++G  +  QLG
Sbjct: 232 HRTPQLVSEIPEKVIQVACGGEHTVVLTE----------NAVYTFGLGQFGQLG 275



 Score = 57.8 bits (138), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 56/199 (28%), Positives = 95/199 (47%), Gaps = 28/199 (14%)

Query: 18  RIFMRSASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVP-GLPSDVTSVSAGHYHS 76
           R+FM          +GD S+G +GL         +   P +V  G P  V+ +S G+YHS
Sbjct: 160 RLFM----------WGDNSEGQIGLKNV-----SNVCVPQQVTIGKP--VSWISCGYYHS 202

Query: 77  LAVTNNGAVWAWGRNNEVQLGRGALESRATWND--PKRVEGLDQVNVCAAFASGVVSSAI 134
             VT +G ++ +G   E + G+  L ++   N   P+ V  + +  +    A G   + +
Sbjct: 203 AFVTTDGELYVFG---EPENGKLGLPNQLLGNHRTPQLVSEIPEKVI--QVACGGEHTVV 257

Query: 135 GDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLF 194
             + +++ +G  + GQLGLG  + E   P  +E +  + I  +S G  H    T+ G ++
Sbjct: 258 LTENAVYTFGLGQFGQLGLGTFLFETSEPKVIENIRDQTISYISCGENHTALITDIGLMY 317

Query: 195 GWGYSADGRIGNLGKALES 213
            +G   DGR G LG  LE+
Sbjct: 318 TFG---DGRHGKLGLGLEN 333


>gi|195126363|ref|XP_002007640.1| GI13052 [Drosophila mojavensis]
 gi|193919249|gb|EDW18116.1| GI13052 [Drosophila mojavensis]
          Length = 1053

 Score = 88.2 bits (217), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 76/287 (26%), Positives = 124/287 (43%), Gaps = 54/287 (18%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYE----PTRVPGLP-SDVTSVSAGHYHSLAVTNNG 83
           +  +G+ S G LGL       GG   E    P+R+P  P S V  ++ GH H+L +T +G
Sbjct: 3   LYCWGNASHGQLGL-------GGIEEEQILTPSRIPWKPDSAVNQIACGHRHTLFLTASG 55

Query: 84  AVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVW 143
            V+A G N+  QLG      R     P ++  L    +         S A+ + G ++ W
Sbjct: 56  KVYACGSNDYSQLGHELPTKR-----PLQIPELQDYVITQIACGSRHSMALSEWGQVFSW 110

Query: 144 GKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGR 203
           G ++ GQLG   D     +P  V  L  + +V+++ G  H+LA T  G+L+ WG +  G+
Sbjct: 111 GDNECGQLGHASDQDIVKLPKIVRNLVSKTVVQIACGSNHSLALTCCGELYSWGSNLYGQ 170

Query: 204 IGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEG 263
           +G                 SS +D + S++ +     L                     G
Sbjct: 171 LG----------------VSSPNDLQQSNTPMRLTTLL---------------------G 193

Query: 264 VEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDI 310
           + V  IACG +HS ++ ++  +   G N  GQLG   +    +P  +
Sbjct: 194 IPVSAIACGGNHSFLISKSSAVFGWGRNNCGQLGLNDETNRAYPTQL 240



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 80/282 (28%), Positives = 117/282 (41%), Gaps = 69/282 (24%)

Query: 85  VWAWGRNNEVQLGRGALESRATWNDPKRV-----EGLDQVNVCAAFASGVVSSAIGDDGS 139
           ++ WG  +  QLG G +E       P R+       ++Q+  C    +  ++++    G 
Sbjct: 3   LYCWGNASHGQLGLGGIEEEQILT-PSRIPWKPDSAVNQI-ACGHRHTLFLTAS----GK 56

Query: 140 LWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYS 199
           ++  G +   QLG          P ++  L    I +++ G  H++A +E G++F WG  
Sbjct: 57  VYACGSNDYSQLGHELPTKR---PLQIPELQDYVITQIACGSRHSMALSEWGQVFSWG-- 111

Query: 200 ADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPF 259
            D   G LG A               SDQ+I      K  K+V   + K           
Sbjct: 112 -DNECGQLGHA---------------SDQDIV-----KLPKIVRNLVSKT---------- 140

Query: 260 LVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLG------REKQDMGMFPVDINFH 313
                 VV IACG +HSL L   G L S GSN+YGQLG       ++ +  M    +   
Sbjct: 141 ------VVQIACGSNHSLALTCCGELYSWGSNLYGQLGVSSPNDLQQSNTPMRLTTLLGI 194

Query: 314 PVS-ISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLG 354
           PVS I+ G  HS  I   +SS V G       WG N   QLG
Sbjct: 195 PVSAIACGGNHSFLIS--KSSAVFG-------WGRNNCGQLG 227



 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 55/179 (30%), Positives = 84/179 (46%), Gaps = 6/179 (3%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSD-VTSVSAGHYHSLAVTNNGAVWA 87
           V S+GD   G LG  +    V      P  V  L S  V  ++ G  HSLA+T  G +++
Sbjct: 107 VFSWGDNECGQLGHASDQDIVKL----PKIVRNLVSKTVVQIACGSNHSLALTCCGELYS 162

Query: 88  WGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSK 147
           WG N   QLG  +       N P R+  L  + V A    G  S  I    +++ WG++ 
Sbjct: 163 WGSNLYGQLGVSSPNDLQQSNTPMRLTTLLGIPVSAIACGGNHSFLISKSSAVFGWGRNN 222

Query: 148 RGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGN 206
            GQLGL  D T    P++++ L    +  V+ G   ++  T +G +F  G  A G++G+
Sbjct: 223 CGQLGLN-DETNRAYPTQLKTLRTLGVRFVACGDEFSVFLTIEGGVFTCGAGAYGQLGH 280



 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 63/242 (26%), Positives = 92/242 (38%), Gaps = 62/242 (25%)

Query: 140 LWVWGKSKRGQLGLGKDITEAIV-PSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGY 198
           L+ WG +  GQLGLG    E I+ PSR+       + +++ G  H L  T  GK++  G 
Sbjct: 3   LYCWGNASHGQLGLGGIEEEQILTPSRIPWKPDSAVNQIACGHRHTLFLTASGKVYACGS 62

Query: 199 SADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEP 258
           +   ++G+                             E   K   +  E + Y+      
Sbjct: 63  NDYSQLGH-----------------------------ELPTKRPLQIPELQDYV------ 87

Query: 259 FLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGR-EKQDMGMFPVDI----NFH 313
                  +  IACG  HS+ L   G + S G N  GQLG    QD+   P  +    +  
Sbjct: 88  -------ITQIACGSRHSMALSEWGQVFSWGDNECGQLGHASDQDIVKLPKIVRNLVSKT 140

Query: 314 PVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPD-----NVPLVVEGL 368
            V I+ G  HSLA+              + SWG N   QLG   P+     N P+ +  L
Sbjct: 141 VVQIACGSNHSLAL---------TCCGELYSWGSNLYGQLGVSSPNDLQQSNTPMRLTTL 191

Query: 369 EG 370
            G
Sbjct: 192 LG 193


>gi|340729980|ref|XP_003403270.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC4-like [Bombus
           terrestris]
          Length = 1104

 Score = 88.2 bits (217), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 78/291 (26%), Positives = 130/291 (44%), Gaps = 58/291 (19%)

Query: 70  SAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWN-DPKRVEGLDQVNVCAAFASG 128
           + G YH++AV   G +++WG N+E QLG   L S+      P+ V+ L   ++    A G
Sbjct: 138 ACGAYHTIAVNEWGQLFSWGSNSEGQLG---LNSKNFMECSPRMVKTLG-TSIIVQIACG 193

Query: 129 VVSS-AIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQ 187
           +  + A+ ++G L+ WG +  GQLGLG DI   + P  +  LAG  I  ++ G  H++A 
Sbjct: 194 MKHALALTNNGELYSWGSNSEGQLGLGVDIRCEMKPKLINTLAGVPIAFIACGGYHSIAI 253

Query: 188 TEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGME 247
           ++ G +FGWG +  G++G              ++ +   +      T+  A+        
Sbjct: 254 SKSGAIFGWGKNTFGQLG--------------LNDTQNRNLPYQLQTLRNAK-------- 291

Query: 248 KEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFP 307
                             V   ACG + S+ L  +G + +CG+ +YGQLG    +  + P
Sbjct: 292 ------------------VCYAACGEEFSVFLTVDGGVFTCGAGMYGQLGHGSNNNEILP 333

Query: 308 VDI----NFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLG 354
             +          IS G  H+LA+       V    R + +WG   + QLG
Sbjct: 334 RQVMELMGSTVTQISCGKRHTLAL-------VPSQGR-VYAWGLGGAGQLG 376



 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 67/255 (26%), Positives = 112/255 (43%), Gaps = 49/255 (19%)

Query: 48  GVGGDAYEPTRVP-----GLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALE 102
           G+GG   E   VP        S++  ++ G  +++ +T++G +++ G N+  QLG     
Sbjct: 61  GLGGIEDEIILVPCEVDFKKASEIQQIACGENYTVVITHDGKIYSCGNNDYGQLGHEQGR 120

Query: 103 SRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIV 162
            R      + + GLD      A      + A+ + G L+ WG +  GQLGL         
Sbjct: 121 KRL-----QLILGLDAFVFKKAACGAYHTIAVNEWGQLFSWGSNSEGQLGLNSKNFMECS 175

Query: 163 PSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDR 222
           P  V+ L    IV+++ G  HALA T +G+L+ WG +++G++G LG  +           
Sbjct: 176 PRMVKTLGTSIIVQIACGMKHALALTNNGELYSWGSNSEGQLG-LGVDIRC--------- 225

Query: 223 SSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRN 282
                        E   KL++                 + GV +  IACG  HS+ + ++
Sbjct: 226 -------------EMKPKLINT----------------LAGVPIAFIACGGYHSIAISKS 256

Query: 283 GVLLSCGSNVYGQLG 297
           G +   G N +GQLG
Sbjct: 257 GAIFGWGKNTFGQLG 271



 Score = 82.4 bits (202), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 64/225 (28%), Positives = 107/225 (47%), Gaps = 15/225 (6%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAW 88
           + S+G  S+G LGL   +          T + G+P  +  ++ G YHS+A++ +GA++ W
Sbjct: 206 LYSWGSNSEGQLGLGVDIRCEMKPKLINT-LAGVP--IAFIACGGYHSIAISKSGAIFGW 262

Query: 89  GRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKR 148
           G+N   QLG    ++R   N P +++ L    VC A      S  +  DG ++  G    
Sbjct: 263 GKNTFGQLGLNDTQNR---NLPYQLQTLRNAKVCYAACGEEFSVFLTVDGGVFTCGAGMY 319

Query: 149 GQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQT-EDGKLFGWGYSADGRIGNL 207
           GQLG G +  E I+P +V  L G  + ++S G  H LA     G+++ WG    G++GN 
Sbjct: 320 GQLGHGSNNNE-ILPRQVMELMGSTVTQISCGKRHTLALVPSQGRVYAWGLGGAGQLGNN 378

Query: 208 GKALESSP-------LDSNIDRSSESDQEISSSTIEKAQKLVSEG 245
                ++P       +  N     + D++ SS T+    K +  G
Sbjct: 379 STRSTTTPQVVRGPWVAPNGSSMMDFDKQFSSCTVGYVVKHIFTG 423



 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 61/203 (30%), Positives = 98/203 (48%), Gaps = 18/203 (8%)

Query: 15  LTSRIFMRSASGT----------AVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGL-P 63
           L + +F ++A G            + S+G  S+G LGL +           P  V  L  
Sbjct: 129 LDAFVFKKAACGAYHTIAVNEWGQLFSWGSNSEGQLGLNSK----NFMECSPRMVKTLGT 184

Query: 64  SDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCA 123
           S +  ++ G  H+LA+TNNG +++WG N+E QLG G ++ R     PK +  L  V +  
Sbjct: 185 SIIVQIACGMKHALALTNNGELYSWGSNSEGQLGLG-VDIRCEMK-PKLINTLAGVPIAF 242

Query: 124 AFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGH 183
               G  S AI   G+++ WGK+  GQLGL  D     +P +++ L   K+   + G   
Sbjct: 243 IACGGYHSIAISKSGAIFGWGKNTFGQLGLN-DTQNRNLPYQLQTLRNAKVCYAACGEEF 301

Query: 184 ALAQTEDGKLFGWGYSADGRIGN 206
           ++  T DG +F  G    G++G+
Sbjct: 302 SVFLTVDGGVFTCGAGMYGQLGH 324



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 78/269 (28%), Positives = 120/269 (44%), Gaps = 39/269 (14%)

Query: 105 ATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAI-VP 163
           A WN  +R+        C       V  ++     ++ WG ++ G+LGLG    E I VP
Sbjct: 23  ANWNKKRRL-------ACEPVIE--VQKSLLKKEDMFCWGNTRHGELGLGGIEDEIILVP 73

Query: 164 SRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLG--KALESSP-LDSNI 220
             V+     +I +++ G  + +  T DGK++  G +  G++G+    K L+    LD+ +
Sbjct: 74  CEVDFKKASEIQQIACGENYTVVITHDGKIYSCGNNDYGQLGHEQGRKRLQLILGLDAFV 133

Query: 221 DRSSESDQEISSSTIEKAQKLV----SE---GMEKEKYMPIIWEPFLVEGV---EVVDIA 270
            + +      + +  E  Q       SE   G+  + +M     P +V+ +    +V IA
Sbjct: 134 FKKAACGAYHTIAVNEWGQLFSWGSNSEGQLGLNSKNFMEC--SPRMVKTLGTSIIVQIA 191

Query: 271 CGFDHSLVLGRNGVLLSCGSNVYGQLGR-EKQDMGMFPVDINFH---PVS-ISSGLGHSL 325
           CG  H+L L  NG L S GSN  GQLG        M P  IN     P++ I+ G  HS+
Sbjct: 192 CGMKHALALTNNGELYSWGSNSEGQLGLGVDIRCEMKPKLINTLAGVPIAFIACGGYHSI 251

Query: 326 AICEVRSSNVTGGARGIVSWGWNRSSQLG 354
           AI +        GA  I  WG N   QLG
Sbjct: 252 AISK-------SGA--IFGWGKNTFGQLG 271


>gi|405373375|ref|ZP_11028148.1| hypothetical protein A176_4709 [Chondromyces apiculatus DSM 436]
 gi|397087634|gb|EJJ18664.1| hypothetical protein A176_4709 [Myxococcus sp. (contaminant ex DSM
           436)]
          Length = 966

 Score = 88.2 bits (217), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 85/297 (28%), Positives = 136/297 (45%), Gaps = 40/297 (13%)

Query: 63  PSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVC 122
           P +VT V+AG YHS+A+ ++G VWAWGRN++ QLGRGA+ +    + P  V     +   
Sbjct: 50  PLEVTRVAAGAYHSVALRSDGEVWAWGRNSDGQLGRGAVSATPEAS-PHPVALPGPMTAV 108

Query: 123 AAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWG 182
           AA A    S AI   G +W WG++ RGQ G    +T   V + V+       V ++    
Sbjct: 109 AAGAGH--SLAIDALGHVWAWGRNNRGQAGSA--LTGGPVLTPVQVTLPAPAVSIAARAD 164

Query: 183 HALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLV 242
           ++LA   +G ++ WG + DG +G                    +   ++  T  K Q  +
Sbjct: 165 YSLAVDANGDVWAWGQNIDGELG------------------QHAADTLAHHTPVKVQ--L 204

Query: 243 SEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQL--GREK 300
            +   +    P+  +P  +    + DIA G  H L L R G + + G N   Q+  G E 
Sbjct: 205 PQATAQGNCTPV--DPLDL--YRIADIAAGGHHVLALTRTGCVWAWGRNDAAQIGTGTES 260

Query: 301 QDMGMFPVDINFHP--VSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGR 355
               + P  +   P   ++++G  HSL   +  +       R + +WG N S Q+GR
Sbjct: 261 STPVLVPTLVRNIPRAKAVAAGESHSLLYDDEMN-------RIVWTWGLNTSGQVGR 310



 Score = 65.9 bits (159), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 98/349 (28%), Positives = 145/349 (41%), Gaps = 68/349 (19%)

Query: 62  LPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNV 121
           LP  +T+V+AG  HSLA+   G VWAWGRNN  Q G  AL        P +V        
Sbjct: 101 LPGPMTAVAAGAGHSLAIDALGHVWAWGRNNRGQAGS-ALTGGPVLT-PVQVTLPAPAVS 158

Query: 122 CAAFASGVVSSAIGDDGSLWVWGKSKRGQLGL-GKDITEAIVPSRVE------------- 167
            AA A    S A+  +G +W WG++  G+LG    D      P +V+             
Sbjct: 159 IAARAD--YSLAVDANGDVWAWGQNIDGELGQHAADTLAHHTPVKVQLPQATAQGNCTPV 216

Query: 168 -ALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSP-----LDSNID 221
             L   +I  ++ G  H LA T  G ++ WG +   +IG   ++  S+P     L  NI 
Sbjct: 217 DPLDLYRIADIAAGGHHVLALTRTGCVWAWGRNDAAQIGTGTES--STPVLVPTLVRNIP 274

Query: 222 RSSESDQEISSSTI--EKAQKLV------SEGMEKEKYMP--------IIWEPFLVEGVE 265
           R+       S S +  ++  ++V      + G     Y+         ++  PFLV G E
Sbjct: 275 RAKAVAAGESHSLLYDDEMNRIVWTWGLNTSGQVGRDYIATTPPLPRQVVRTPFLVNGSE 334

Query: 266 VVDIACGF--DHSL-VLGR-NGVLLSCGSNVYGQLGREKQDMGMFPVDINFHPVSISSGL 321
                     D SL ++G   G + S G+N +GQLG   Q +   P     + +   +G 
Sbjct: 335 AAGGGLAAGDDFSLFIMGYPTGNVRSWGANAFGQLGNGTQALRQTPE----YALRTLTGP 390

Query: 322 GHSLAICEVRSSNVTGGARG----------------IVSWGWNRSSQLG 354
            +++A+   R   V GGAR                 + SWG N   QLG
Sbjct: 391 PYTMAVDATRQ--VAGGARHGLAVRHEQYEYANCPVVWSWGDNSQGQLG 437


>gi|354500509|ref|XP_003512342.1| PREDICTED: RCC1 and BTB domain-containing protein 1 [Cricetulus
           griseus]
 gi|344258048|gb|EGW14152.1| RCC1 and BTB domain-containing protein 1 [Cricetulus griseus]
          Length = 531

 Score = 88.2 bits (217), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 58/180 (32%), Positives = 92/180 (51%), Gaps = 5/180 (2%)

Query: 62  LPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNV 121
           L   V  V+ G +HS+A+  +G V+AWG NN  Q+G G+  ++ T   P++V        
Sbjct: 126 LIKQVVEVACGSHHSMALAADGEVFAWGYNNCGQVGSGSTANQPT---PRKVTSCLHTKR 182

Query: 122 CAAFASGVVSS-AIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFG 180
             + A G  SS A+ D G ++ WG +  GQLGLG +  + + P RV AL    + ++  G
Sbjct: 183 VVSIACGQTSSMAVLDSGEVYGWGYNGNGQLGLGNNGNQ-LTPVRVAALQSVCVNQIVCG 241

Query: 181 WGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQK 240
           + H LA T++G L+ WG +  G++G   K    SP    +++    +     ST   A K
Sbjct: 242 YAHTLALTDEGLLYAWGANTYGQLGTGSKNNLLSPTPIMVEKERVVEIAACHSTHTSAAK 301



 Score = 75.5 bits (184), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 71/293 (24%), Positives = 116/293 (39%), Gaps = 67/293 (22%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLP-SDVTSVSAGH-YHSLAVTNNGAVW 86
           V  FG      LG     TG       P ++  L    + S+S G   H L  T +G V+
Sbjct: 43  VFVFGLNYSNCLG-----TGDNQSTLVPKKLEALCGKKIKSLSYGSGPHVLLSTEDGVVY 97

Query: 87  AWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVV---------SSAIGDD 137
           AWG N   QLG G              +G+  V VC       V         S A+  D
Sbjct: 98  AWGHNGYSQLGNGTTN-----------QGIAPVQVCTNLLIKQVVEVACGSHHSMALAAD 146

Query: 138 GSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWG 197
           G ++ WG +  GQ+G G    +         L  +++V ++ G   ++A  + G+++GWG
Sbjct: 147 GEVFAWGYNNCGQVGSGSTANQPTPRKVTSCLHTKRVVSIACGQTSSMAVLDSGEVYGWG 206

Query: 198 YSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWE 257
           Y+ +G++G      + +P+             +++                         
Sbjct: 207 YNGNGQLGLGNNGNQLTPV------------RVAA------------------------- 229

Query: 258 PFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDI 310
              ++ V V  I CG+ H+L L   G+L + G+N YGQLG   ++  + P  I
Sbjct: 230 ---LQSVCVNQIVCGYAHTLALTDEGLLYAWGANTYGQLGTGSKNNLLSPTPI 279



 Score = 65.9 bits (159), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 69/257 (26%), Positives = 110/257 (42%), Gaps = 59/257 (22%)

Query: 122 CAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGW 181
           C   AS   +  + D+  ++V+G +    LG G D    +VP ++EAL G+KI  +S+G 
Sbjct: 25  CVFGASANEAIYVTDNDEVFVFGLNYSNCLGTG-DNQSTLVPKKLEALCGKKIKSLSYGS 83

Query: 182 G-HALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQK 240
           G H L  TEDG ++ WG++   ++GN                                  
Sbjct: 84  GPHVLLSTEDGVVYAWGHNGYSQLGN---------------------------------- 109

Query: 241 LVSEGMEKEKYMPI-IWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGRE 299
               G   +   P+ +    L++  +VV++ACG  HS+ L  +G + + G N  GQ+G  
Sbjct: 110 ----GTTNQGIAPVQVCTNLLIK--QVVEVACGSHHSMALAADGEVFAWGYNNCGQVGSG 163

Query: 300 KQDMGMFPVDIN--FHP---VSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQ-- 352
                  P  +    H    VSI+ G   S+A+  + S  V G       WG+N + Q  
Sbjct: 164 STANQPTPRKVTSCLHTKRVVSIACGQTSSMAV--LDSGEVYG-------WGYNGNGQLG 214

Query: 353 LGRMGPDNVPLVVEGLE 369
           LG  G    P+ V  L+
Sbjct: 215 LGNNGNQLTPVRVAALQ 231


>gi|351542221|ref|NP_001082438.2| regulator of chromosome condensation (RCC1) and BTB (POZ) domain
           containing protein 1 [Xenopus laevis]
          Length = 600

 Score = 88.2 bits (217), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 51/156 (32%), Positives = 91/156 (58%), Gaps = 5/156 (3%)

Query: 62  LPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNV 121
           L   V  V+ G +HS+A+T++G V++WG NN  Q+G G   +++    P++V    Q  V
Sbjct: 196 LSKKVIQVACGSHHSMALTSDGEVFSWGYNNCGQVGSGTTANQSV---PRKVASSLQSKV 252

Query: 122 CAAFASGVVSS-AIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFG 180
             + ++G  SS A+ D+G ++ WG +  GQLGLG +    ++P R+       I++V  G
Sbjct: 253 VVSISAGQTSSMALTDNGHVYGWGYNGTGQLGLG-NTGNQLMPCRLVFAQPICIIQVVLG 311

Query: 181 WGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPL 216
           + H LA ++ G L+ WG ++ G++G   K+ ++ P+
Sbjct: 312 YAHTLALSDQGVLYAWGANSHGQLGIGNKSNQTVPV 347



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 70/274 (25%), Positives = 122/274 (44%), Gaps = 23/274 (8%)

Query: 76  SLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVC-AAFASGVVSSAI 134
           ++  T N  V+ +G N    LG G  +S      P+R++ L    +   ++ SG      
Sbjct: 104 AIYTTQNNEVFVFGMNISSCLGTGDNQSTIM---PRRLDVLCGKKIVDLSYGSGPHILLC 160

Query: 135 GDDGSLWVWGKSKRGQLGLGKDITEAIVPSRV-EALAGEKIVKVSFGWGHALAQTEDGKL 193
            +DG ++ WG +   QLG G  I +   P +V   L  +K+++V+ G  H++A T DG++
Sbjct: 161 NEDGEVYSWGHNGYSQLGNGNTI-QGTTPVQVCMELLSKKVIQVACGSHHSMALTSDGEV 219

Query: 194 FGWGYSADGRIGNLGKALESSP------LDSNIDRSSESDQEISSSTIEKAQKL------ 241
           F WGY+  G++G+   A +S P      L S +  S  + Q  S +  +           
Sbjct: 220 FSWGYNNCGQVGSGTTANQSVPRKVASSLQSKVVVSISAGQTSSMALTDNGHVYGWGYNG 279

Query: 242 ---VSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGR 298
              +  G    + MP        + + ++ +  G+ H+L L   GVL + G+N +GQLG 
Sbjct: 280 TGQLGLGNTGNQLMPC--RLVFAQPICIIQVVLGYAHTLALSDQGVLYAWGANSHGQLGI 337

Query: 299 EKQDMGMFPVDINFHPVSISSGLGHSLAICEVRS 332
             +     PV +  +   +     HS  I   +S
Sbjct: 338 GNKSNQTVPVKVGTNERMVEVTACHSTNISAAKS 371


>gi|336118147|ref|YP_004572915.1| hypothetical protein MLP_24980 [Microlunatus phosphovorus NM-1]
 gi|334685927|dbj|BAK35512.1| hypothetical protein MLP_24980 [Microlunatus phosphovorus NM-1]
          Length = 463

 Score = 88.2 bits (217), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 89/300 (29%), Positives = 134/300 (44%), Gaps = 44/300 (14%)

Query: 54  YEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRV 113
           Y P R   LP+ +  +  G   ++A+T +G V  WG N   QLG G+   R T   P++V
Sbjct: 30  YSP-RPARLPAGIVDLQGGANFTIALTESGRVLTWGSNEHGQLGDGSRRPRRT---PQQV 85

Query: 114 EGLDQVNVCAAFASGVVS-SAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGE 172
             L + +  AA A+G      +   G L  WG++ RGQLG G D  + + P  V A   E
Sbjct: 86  R-LPEGHRAAAIAAGTDHVVVVTTRGHLITWGRNHRGQLGTG-DRDDRLSPKVVRA---E 140

Query: 173 KIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQ--EI 230
            + KV+ G G + A T  G+L  WG +  G++   G    S P+  ++ +   + Q  E 
Sbjct: 141 TVRKVAAGDGISAAITPGGRLLTWGRNGQGQLAQKG----SVPVGRDVLKPIHARQVSEP 196

Query: 231 SSSTIEKAQKLV---SEG-------------MEKEKYMPIIWEPFLVEGVEVVDIACGFD 274
            S+     + LV   S+G             + K+  +P  W        +V  I  G D
Sbjct: 197 VSAVDAGLRHLVVLTSDGDVLMFGVDVAGLPLGKKMALPARWG-------QVRTIVAGED 249

Query: 275 HSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFHPV-----SISSGLGHSLAICE 329
           H+L L R GV+L  G+N  GQL        + PV +    V      I +G  H LA+ +
Sbjct: 250 HTLALTRRGVILGWGANDLGQLATGDSAHQLSPVVVKLSGVRGQVTQIRAGHRHGLALTD 309


>gi|145593727|ref|YP_001158024.1| regulator of chromosome condensation, RCC1 [Salinispora tropica
           CNB-440]
 gi|145303064|gb|ABP53646.1| regulator of chromosome condensation, RCC1 [Salinispora tropica
           CNB-440]
          Length = 567

 Score = 88.2 bits (217), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 85/304 (27%), Positives = 135/304 (44%), Gaps = 24/304 (7%)

Query: 52  DAYEPTRVPGLP-SDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDP 110
           D   P  V   P + VT+V+AG  HS+A+T+ G V AWG N   QLG G+   R T  + 
Sbjct: 127 DRSAPVEVSLPPGTTVTAVAAGGVHSMALTSVGTVLAWGGNGVGQLGDGSTTRRTTPVEA 186

Query: 111 KRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALA 170
               G   V V A  A+   S A+   G+   WG +  GQLG G  I  +  P  V    
Sbjct: 187 ILPSG---VTVTAVAAAESHSLAVTSAGAALAWGLNGTGQLGDGSTINRS-TPVSVALPL 242

Query: 171 GEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEI 230
           G ++  ++ G  H+LA T  G    WGY+  G++G+      S+P+   +   +E    +
Sbjct: 243 GTEVTAIAAGRLHSLAVTSVGAALAWGYNGTGQLGDGTTINRSTPVSVALPLGAEVTAVV 302

Query: 231 S----SSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGF----------DHS 276
           +    S+ +  A   ++ G      +         E VE V +  G           DH+
Sbjct: 303 AGRLHSAALTTAGTALAWGDNGFGQLGNGGGSNSSEAVE-VSLPTGTTLAAIASRDSDHT 361

Query: 277 LVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFHP----VSISSGLGHSLAICEVRS 332
           + +  +G  L+ GSN++GQLG         PV +        ++ ++G  H+LA+   +S
Sbjct: 362 IAIAGDGTALAWGSNIFGQLGDGTTTNPSTPVPVALPTGITLLTTAAGSDHTLALPAQQS 421

Query: 333 SNVT 336
            + T
Sbjct: 422 RSTT 425



 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 80/256 (31%), Positives = 107/256 (41%), Gaps = 54/256 (21%)

Query: 62  LPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNV 121
           L + VT+V+AG +HSLA+T+ G V AWG N+  QLG G L  R   + P  V       V
Sbjct: 86  LGTTVTAVAAGRFHSLALTSAGTVLAWGTNHFGQLGDGTLIDR---SAPVEVSLPPGTTV 142

Query: 122 CAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDI-----TEAIVPSRVEALAGEKIVK 176
            A  A GV S A+   G++  WG +  GQLG G         EAI+PS      G  +  
Sbjct: 143 TAVAAGGVHSMALTSVGTVLAWGGNGVGQLGDGSTTRRTTPVEAILPS------GVTVTA 196

Query: 177 VSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIE 236
           V+    H+LA T  G    WG +  G++G+           S I+RS+            
Sbjct: 197 VAAAESHSLAVTSAGAALAWGLNGTGQLGD----------GSTINRST------------ 234

Query: 237 KAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQL 296
                          +P+        G EV  IA G  HSL +   G  L+ G N  GQL
Sbjct: 235 ----------PVSVALPL--------GTEVTAIAAGRLHSLAVTSVGAALAWGYNGTGQL 276

Query: 297 GREKQDMGMFPVDINF 312
           G         PV +  
Sbjct: 277 GDGTTINRSTPVSVAL 292



 Score = 57.8 bits (138), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 60/219 (27%), Positives = 86/219 (39%), Gaps = 54/219 (24%)

Query: 140 LWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYS 199
           L  WGK+  GQLG G   T + VP  V    G  +  V+ G  H+LA T  G +  WG +
Sbjct: 57  LLAWGKNDNGQLGNGST-TGSNVPIAVSLPLGTTVTAVAAGRFHSLALTSAGTVLAWGTN 115

Query: 200 ADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPF 259
             G++G+           + IDRS+                            P+  E  
Sbjct: 116 HFGQLGD----------GTLIDRSA----------------------------PV--EVS 135

Query: 260 LVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFHP----V 315
           L  G  V  +A G  HS+ L   G +L+ G N  GQLG         PV+          
Sbjct: 136 LPPGTTVTAVAAGGVHSMALTSVGTVLAWGGNGVGQLGDGSTTRRTTPVEAILPSGVTVT 195

Query: 316 SISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLG 354
           ++++   HSLA+           A   ++WG N + QLG
Sbjct: 196 AVAAAESHSLAVTS---------AGAALAWGLNGTGQLG 225



 Score = 44.3 bits (103), Expect = 0.086,   Method: Compositional matrix adjust.
 Identities = 50/197 (25%), Positives = 75/197 (38%), Gaps = 59/197 (29%)

Query: 168 ALAGEKIVKVSFGWGHALAQTEDGK------LFGWGYSADGRIGNLGKALESSPLDSNID 221
           ALA    V  + G   ALAQ + G       L  WG + +G++GN               
Sbjct: 26  ALALAVTVTQAIGVSPALAQHKPGSTAVSEFLLAWGKNDNGQLGN--------------- 70

Query: 222 RSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGR 281
                                  G      +PI     L  G  V  +A G  HSL L  
Sbjct: 71  -----------------------GSTTGSNVPIAVS--LPLGTTVTAVAAGRFHSLALTS 105

Query: 282 NGVLLSCGSNVYGQLGREKQDMGMFPVDINFHP----VSISSGLGHSLAICEVRSSNVTG 337
            G +L+ G+N +GQLG         PV+++  P     ++++G  HS+A+  V +     
Sbjct: 106 AGTVLAWGTNHFGQLGDGTLIDRSAPVEVSLPPGTTVTAVAAGGVHSMALTSVGT----- 160

Query: 338 GARGIVSWGWNRSSQLG 354
               +++WG N   QLG
Sbjct: 161 ----VLAWGGNGVGQLG 173


>gi|27695022|gb|AAH43960.1| LOC398469 protein, partial [Xenopus laevis]
          Length = 589

 Score = 88.2 bits (217), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 51/156 (32%), Positives = 91/156 (58%), Gaps = 5/156 (3%)

Query: 62  LPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNV 121
           L   V  V+ G +HS+A+T++G V++WG NN  Q+G G   +++    P++V    Q  V
Sbjct: 185 LSKKVIQVACGSHHSMALTSDGEVFSWGYNNCGQVGSGTTANQSV---PRKVASSLQSKV 241

Query: 122 CAAFASGVVSS-AIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFG 180
             + ++G  SS A+ D+G ++ WG +  GQLGLG +    ++P R+       I++V  G
Sbjct: 242 VVSISAGQTSSMALTDNGHVYGWGYNGTGQLGLG-NTGNQLMPCRLVFAQPICIIQVVLG 300

Query: 181 WGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPL 216
           + H LA ++ G L+ WG ++ G++G   K+ ++ P+
Sbjct: 301 YAHTLALSDQGVLYAWGANSHGQLGIGNKSNQTVPV 336



 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 74/295 (25%), Positives = 128/295 (43%), Gaps = 28/295 (9%)

Query: 76  SLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVC-AAFASGVVSSAI 134
           ++  T N  V+ +G N    LG G  +S      P+R++ L    +   ++ SG      
Sbjct: 93  AIYTTQNNEVFVFGMNISSCLGTGDNQSTIM---PRRLDVLCGKKIVDLSYGSGPHILLC 149

Query: 135 GDDGSLWVWGKSKRGQLGLGKDITEAIVPSRV-EALAGEKIVKVSFGWGHALAQTEDGKL 193
            +DG ++ WG +   QLG G  I +   P +V   L  +K+++V+ G  H++A T DG++
Sbjct: 150 NEDGEVYSWGHNGYSQLGNGNTI-QGTTPVQVCMELLSKKVIQVACGSHHSMALTSDGEV 208

Query: 194 FGWGYSADGRIGNLGKALESSP------LDSNIDRSSESDQEISSSTIEKAQKL------ 241
           F WGY+  G++G+   A +S P      L S +  S  + Q  S +  +           
Sbjct: 209 FSWGYNNCGQVGSGTTANQSVPRKVASSLQSKVVVSISAGQTSSMALTDNGHVYGWGYNG 268

Query: 242 ---VSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGR 298
              +  G    + MP        + + ++ +  G+ H+L L   GVL + G+N +GQLG 
Sbjct: 269 TGQLGLGNTGNQLMPC--RLVFAQPICIIQVVLGYAHTLALSDQGVLYAWGANSHGQLGI 326

Query: 299 EKQDMGMFPVDINFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQL 353
             +     PV +  +   +     HS  I   +S      +  +  WG  R   L
Sbjct: 327 GNKSNQTVPVKVGTNERMVEVTACHSTNISAAKSQ-----SEQVYMWGLCRGQCL 376


>gi|42568678|ref|NP_200895.2| regulator of chromosome condensation repeat-containing protein
           [Arabidopsis thaliana]
 gi|10176914|dbj|BAB10107.1| unnamed protein product [Arabidopsis thaliana]
 gi|332010005|gb|AED97388.1| regulator of chromosome condensation repeat-containing protein
           [Arabidopsis thaliana]
          Length = 445

 Score = 88.2 bits (217), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 57/172 (33%), Positives = 94/172 (54%), Gaps = 5/172 (2%)

Query: 50  GGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWND 109
           GG    P++V  L   V SVS G + ++A+T  G +W WG N+  +LGRG  ++   W +
Sbjct: 248 GGGLSVPSKVKALTVPVASVSCGGFFTMALTKEGQLWNWGANSNYELGRG--DNLGGW-E 304

Query: 110 PKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEAL 169
           P  V  L+ V +      G  S A+ ++G +  WG    GQLG    +    VP+ +EAL
Sbjct: 305 PMPVPSLEGVRITQIACGGYHSLALTEEGKVLSWGHGGHGQLG-SSSLRNQKVPTEIEAL 363

Query: 170 AGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLG-KALESSPLDSNI 220
           A +KIV ++ G   + A T+ G+L+ WG + D ++G  G   ++++P++ N 
Sbjct: 364 ADKKIVFIASGGSSSAAITDGGELWMWGNAKDFQLGVPGLPEIQTTPVEVNF 415



 Score = 68.2 bits (165), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 77/282 (27%), Positives = 114/282 (40%), Gaps = 70/282 (24%)

Query: 66  VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWND--PKRVEGLDQVNVCA 123
           +  ++ G  HS+A+T+ G V+ WG       G GAL  +    +  P+RV+      + A
Sbjct: 154 IRCIALGGLHSVALTHQGDVFTWGYG-----GFGALGHKVYTRELVPRRVDDSWDCKISA 208

Query: 124 AFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEA------IVPSRVEALAGEKIVKV 177
              SG  ++AI + G L++WG+ +                    VPS+V+AL    +  V
Sbjct: 209 IATSGTHTAAITESGELYMWGREEGDGRLGLGPGRGPNEGGGLSVPSKVKALT-VPVASV 267

Query: 178 SFGWGHALAQTEDGKLFGWGYSAD---GRIGNLGKALESSPLDSNIDRSSESDQEISSST 234
           S G    +A T++G+L+ WG +++   GR  NLG                          
Sbjct: 268 SCGGFFTMALTKEGQLWNWGANSNYELGRGDNLGG------------------------- 302

Query: 235 IEKAQKLVSEGMEKEKYMPIIWEPFLV---EGVEVVDIACGFDHSLVLGRNGVLLSCGSN 291
                                WEP  V   EGV +  IACG  HSL L   G +LS G  
Sbjct: 303 ---------------------WEPMPVPSLEGVRITQIACGGYHSLALTEEGKVLSWGHG 341

Query: 292 VYGQLGREKQDMGMFPVDI----NFHPVSISSGLGHSLAICE 329
            +GQLG         P +I    +   V I+SG   S AI +
Sbjct: 342 GHGQLGSSSLRNQKVPTEIEALADKKIVFIASGGSSSAAITD 383



 Score = 65.9 bits (159), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 82/325 (25%), Positives = 131/325 (40%), Gaps = 52/325 (16%)

Query: 85  VWAWGRNNEVQLGRGALESR-----------------ATWNDPKRVEGLDQVNVCAAFAS 127
           +++WGR    QLG G  E R                 +    P R++  D  +     + 
Sbjct: 50  LFSWGRGASGQLGGGIEEIRMYPSPVANLLFRSDQSFSLAQTPGRIDA-DSSSFRIGISC 108

Query: 128 GVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQ 187
           G+  S +  DG LW+WGK   G+LG G++     VP+         I  ++ G  H++A 
Sbjct: 109 GLFHSGLTIDGDLWIWGKGDGGRLGFGQE-NSVFVPNLNPLFEEHSIRCIALGGLHSVAL 167

Query: 188 TEDGKLFGWGYSADGRIGNLGKALESSP--LDSNIDR--SSESDQEISSSTIEKAQKLVS 243
           T  G +F WGY   G +G+     E  P  +D + D   S+ +     ++ I ++ +L  
Sbjct: 168 THQGDVFTWGYGGFGALGHKVYTRELVPRRVDDSWDCKISAIATSGTHTAAITESGELYM 227

Query: 244 EGMEKEKYMPI------------IWEPFLVEG--VEVVDIACGFDHSLVLGRNGVLLSCG 289
            G E+                  +  P  V+   V V  ++CG   ++ L + G L + G
Sbjct: 228 WGREEGDGRLGLGPGRGPNEGGGLSVPSKVKALTVPVASVSCGGFFTMALTKEGQLWNWG 287

Query: 290 SNVYGQLGREKQDMGMFPVDI----NFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSW 345
           +N   +LGR     G  P+ +          I+ G  HSLA+ E            ++SW
Sbjct: 288 ANSNYELGRGDNLGGWEPMPVPSLEGVRITQIACGGYHSLALTEEGK---------VLSW 338

Query: 346 GWNRSSQLGRMGPDN--VPLVVEGL 368
           G     QLG     N  VP  +E L
Sbjct: 339 GHGGHGQLGSSSLRNQKVPTEIEAL 363


>gi|408500623|ref|YP_006864542.1| RCC1 repeat-containing protein [Bifidobacterium asteroides PRL2011]
 gi|408465447|gb|AFU70976.1| RCC1 repeat-containing protein [Bifidobacterium asteroides PRL2011]
          Length = 1271

 Score = 88.2 bits (217), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 83/297 (27%), Positives = 126/297 (42%), Gaps = 49/297 (16%)

Query: 66  VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRAT---WNDPKRVEGLDQVNVC 122
            + +++G  HSLA+ ++G+++AWG N+  Q+G  +   R T    N P      DQ    
Sbjct: 206 FSQITSGATHSLALGSDGSLYAWGDNSSGQVGDNSTTLRQTPVKTNKPANAS--DQFTFT 263

Query: 123 AAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAG----EKIVKVS 178
              A    S AIG DG+L+ WG + RGQLG G      + P +V   AG        +VS
Sbjct: 264 TIAAGDHSSLAIGSDGNLYAWGNNTRGQLGDGT-TENKLTPVKVPKPAGVSNEFTWTQVS 322

Query: 179 FGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKA 238
             W H LA   +  L+ WG++  G++GN           +++   S++    SS  +   
Sbjct: 323 ARWDHTLALGSNHNLYAWGWNGYGQLGN-----------TSVPTGSDNPAAYSSKPV--- 368

Query: 239 QKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGR 298
             LVS                   GV    ++ G  HSL LG +  L + G N  G+LG 
Sbjct: 369 --LVST----------------PAGVTFTQLSAGRYHSLALGSDKQLYAWGLNTSGRLGD 410

Query: 299 EKQDMGMFPVDINFHPVSIS-SGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLG 354
                   PV +   P  ++ S        C   S+N       + +WGWN   +LG
Sbjct: 411 GTDIQRFTPVPVR-QPAGVTFSQFSAGDTSCFAISTN-----GDLYAWGWNGYGRLG 461



 Score = 84.3 bits (207), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 94/338 (27%), Positives = 143/338 (42%), Gaps = 53/338 (15%)

Query: 66  VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAF 125
            T+++AG + SLA+ ++G ++AWG N   QLG G  E++ T   P +V       V   F
Sbjct: 262 FTTIAAGDHSSLAIGSDGNLYAWGNNTRGQLGDGTTENKLT---PVKVP--KPAGVSNEF 316

Query: 126 ASGVVSS------AIGDDGSLWVWGKSKRGQLG-----LGKDITEAIV--PSRVEALAGE 172
               VS+      A+G + +L+ WG +  GQLG      G D   A    P  V   AG 
Sbjct: 317 TWTQVSARWDHTLALGSNHNLYAWGWNGYGQLGNTSVPTGSDNPAAYSSKPVLVSTPAGV 376

Query: 173 KIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPL----DSNIDRSSESDQ 228
              ++S G  H+LA   D +L+ WG +  GR+G+       +P+     + +  S  S  
Sbjct: 377 TFTQLSAGRYHSLALGSDKQLYAWGLNTSGRLGDGTDIQRFTPVPVRQPAGVTFSQFSAG 436

Query: 229 EISSSTIEKAQKLVSEGME-----------KEKYMPIIWEP-------FLVEGVEVVDIA 270
           + S   I     L + G             +++  P +  P       F    V V D  
Sbjct: 437 DTSCFAISTNGDLYAWGWNGYGRLGDGSNAEDRRTPTLISPPDGASAGFTWARVMVRD-- 494

Query: 271 CGFDHSLVLGRNGVLLSCGSNVYGQLG-REKQDMGMF---PVDINFHPVSISSGLGHSLA 326
              DH L +G +G L S G N YGQLG ++    G +   P  ++    S +     +  
Sbjct: 495 ---DHVLAIGSDGNLYSWGLNEYGQLGIKDINTDGSYISRPHIVDQSTSSTAQKFTWTQI 551

Query: 327 ICEVRSSNVTGGARGIVSWGWNRSSQLG----RMGPDN 360
               R S+  G    + +WGWN   QLG     +G DN
Sbjct: 552 NAGWRESSALGSDGNLYTWGWNNGGQLGDPTVPIGTDN 589



 Score = 74.7 bits (182), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 104/355 (29%), Positives = 143/355 (40%), Gaps = 73/355 (20%)

Query: 29   VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDV---TSVSAGHYHSLAVTNNGAV 85
            V S+G    G LG      G   D   P ++P  P+ V   T VSAG   SLA+   G V
Sbjct: 782  VYSWGANKYGQLG-----DGTATDRLTPVQIP-KPTGVNRFTQVSAGTGFSLALDGQGHV 835

Query: 86   WAWGRNNEVQLGRGALE---SRATWNDPKRVE---GLDQVNVCAAFASGVVSSAIGDDGS 139
            WAWG N+  QLG  A+    S A  + P RV+   G+   N      S  ++  +  DG 
Sbjct: 836  WAWGLNSSGQLGSNAIATNGSSAYSSSPIRVQAPSGMTATNFTLTGISAGITHVLAVDGQ 895

Query: 140  --LWVWGKSKRGQLGLGKDI--TEAIV--PSRVEALAGEKI----VKVSFGWGHALAQTE 189
               W WG ++ G+LG+      T  I   P +V    GE       +VS G  H+LA   
Sbjct: 896  GRAWGWGSNEFGKLGVPASTVATTGITTRPVQVATPQGETTGFHYAQVSAGGSHSLATDT 955

Query: 190  DGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKE 249
             G+ +GWG + +G +GN                   SD  ++  T    Q        K 
Sbjct: 956  QGRAWGWGSNQNGALGN------------------TSDVALNGYTTTPVQ-------AKP 990

Query: 250  KYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLG------REKQDM 303
               P         G     I  G  HSL L   G + S G N  G+LG      R    M
Sbjct: 991  GTNP-------SGGFNPAQIIAGSGHSLALDDLGRIWSWGGNSNGELGLGDTTTRTAPSM 1043

Query: 304  GMFPVDIN-FHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMG 357
               P +++ F  ++ S   G+SLA+ +  + N+ G       WG N S  LG  G
Sbjct: 1044 VAMPANVSTFTQLTGSRVSGNSLALDQ--NGNIWG-------WGQNSSGMLGTGG 1089



 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 84/313 (26%), Positives = 123/313 (39%), Gaps = 68/313 (21%)

Query: 66   VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAF 125
             + VSAG  HSLA+ ++G V++WG N   QLG G    R T   P ++     VN     
Sbjct: 763  FSQVSAGDDHSLALGSDGNVYSWGANKYGQLGDGTATDRLT---PVQIPKPTGVNRFTQV 819

Query: 126  ASGV-VSSAIGDDGSLWVWGKSKRGQLGLGKDITE-----AIVPSRVEALAGE-----KI 174
            ++G   S A+   G +W WG +  GQLG     T      +  P RV+A +G       +
Sbjct: 820  SAGTGFSLALDGQGHVWAWGLNSSGQLGSNAIATNGSSAYSSSPIRVQAPSGMTATNFTL 879

Query: 175  VKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSST 234
              +S G  H LA    G+ +GWG +  G++G     + ++ +                 T
Sbjct: 880  TGISAGITHVLAVDGQGRAWGWGSNEFGKLGVPASTVATTGI-----------------T 922

Query: 235  IEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYG 294
                Q    +G                 G     ++ G  HSL     G     GSN  G
Sbjct: 923  TRPVQVATPQGE--------------TTGFHYAQVSAGGSHSLATDTQGRAWGWGSNQNG 968

Query: 295  QLGREKQDMGM-----FPVDIN--------FHPVSISSGLGHSLAICEVRSSNVTGGARG 341
             LG    D+ +      PV           F+P  I +G GHSLA+ ++           
Sbjct: 969  ALG-NTSDVALNGYTTTPVQAKPGTNPSGGFNPAQIIAGSGHSLALDDLGR--------- 1018

Query: 342  IVSWGWNRSSQLG 354
            I SWG N + +LG
Sbjct: 1019 IWSWGGNSNGELG 1031



 Score = 70.5 bits (171), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 63/194 (32%), Positives = 91/194 (46%), Gaps = 14/194 (7%)

Query: 32   FGDGSQGALGLPTSLTGVGGDAYEPTRV-PGL-PS---DVTSVSAGHYHSLAVTNNGAVW 86
            +G    GALG  TS   + G    P +  PG  PS   +   + AG  HSLA+ + G +W
Sbjct: 962  WGSNQNGALGN-TSDVALNGYTTTPVQAKPGTNPSGGFNPAQIIAGSGHSLALDDLGRIW 1020

Query: 87   AWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSS---AIGDDGSLWVW 143
            +WG N+  +LG G   +R     P  V     V+         VS    A+  +G++W W
Sbjct: 1021 SWGGNSNGELGLGDTTTRTA---PSMVAMPANVSTFTQLTGSRVSGNSLALDQNGNIWGW 1077

Query: 144  GKSKRGQLGLGKDITEAIVPSRVEALAG-EKIVKVSFGWGHALAQTEDGKLFGWGYSADG 202
            G++  G LG G        P+++   +G +  VKV  G GH LA   DG   GWG ++ G
Sbjct: 1078 GQNSSGMLGTGG-TGSLNRPTKMSNPSGIDHFVKVCAGTGHTLAVASDGSTLGWGDNSQG 1136

Query: 203  RIGNLGKALESSPL 216
            R+GN       SP+
Sbjct: 1137 RLGNNATETVYSPV 1150



 Score = 68.6 bits (166), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 79/280 (28%), Positives = 111/280 (39%), Gaps = 56/280 (20%)

Query: 66  VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAF 125
            T +SAG YHSLA+ ++  ++AWG N   +LG G    R T    ++  G+      + F
Sbjct: 378 FTQLSAGRYHSLALGSDKQLYAWGLNTSGRLGDGTDIQRFTPVPVRQPAGV----TFSQF 433

Query: 126 ASGVVSS-AIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVE----ALAGEKIVKVSFG 180
           ++G  S  AI  +G L+ WG +  G+LG G +  +   P+ +     A AG    +V   
Sbjct: 434 SAGDTSCFAISTNGDLYAWGWNGYGRLGDGSNAEDRRTPTLISPPDGASAGFTWARVMVR 493

Query: 181 WGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEI-SSSTIEKAQ 239
             H LA   DG L+ WG +  G++G           D N D S  S   I   ST   AQ
Sbjct: 494 DDHVLAIGSDGNLYSWGLNEYGQLGI---------KDINTDGSYISRPHIVDQSTSSTAQ 544

Query: 240 KLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLG-- 297
           K               W            I  G+  S  LG +G L + G N  GQLG  
Sbjct: 545 KFT-------------W----------TQINAGWRESSALGSDGNLYTWGWNNGGQLGDP 581

Query: 298 ------------REKQDMGMFPVDINFHPVSISSGLGHSL 325
                       R    +  FP+  +   V     LG  L
Sbjct: 582 TVPIGTDNSQAMRLTPSLAAFPLSPDVTAVKFDRTLGRDL 621



 Score = 61.6 bits (148), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 98/395 (24%), Positives = 144/395 (36%), Gaps = 101/395 (25%)

Query: 51  GDAYEPTRVPGLPSDVTSVSAGHY---------HSLAVTNNGAVWAWGRNNEVQLG---- 97
           G   E  R P L S     SAG           H LA+ ++G +++WG N   QLG    
Sbjct: 463 GSNAEDRRTPTLISPPDGASAGFTWARVMVRDDHVLAIGSDGNLYSWGLNEYGQLGIKDI 522

Query: 98  --RGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLG--- 152
              G+  SR    D        +       A    SSA+G DG+L+ WG +  GQLG   
Sbjct: 523 NTDGSYISRPHIVDQSTSSTAQKFTWTQINAGWRESSALGSDGNLYTWGWNNGGQLGDPT 582

Query: 153 --LGKDITEA--IVPS-------------RVEALAGEKIVKVSFGWGHALAQTEDGK--- 192
             +G D ++A  + PS             + +   G  + +    W  A      G+   
Sbjct: 583 VPIGTDNSQAMRLTPSLAAFPLSPDVTAVKFDRTLGRDLKRAGTNWQVATPAHRKGQIKA 642

Query: 193 -----LFG--------WGYSADGRIGNLGKALESSPLDSNI---DRSSESDQEIS----- 231
                L+G        + Y     +    KA  S P   ++     +S  DQ+ +     
Sbjct: 643 AITWNLYGPQPDEILDYTYDPPIYVVTFDKADGSQPTSQSVIEDQTASRPDQDPTRPGFL 702

Query: 232 -------------SSTIEKAQKLVSE---GMEKEKYMP----------IIWEPFLVEGVE 265
                        SS ++   KL +    G  +    P          +   P    G+ 
Sbjct: 703 FDGWFNGDVAYDFSSPVKGPTKLTAHWTAGAGQWTISPNQGPDSGQTKVTLVPPAARGIR 762

Query: 266 VVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFHP------VSISS 319
              ++ G DHSL LG +G + S G+N YGQLG       + PV I   P        +S+
Sbjct: 763 FSQVSAGDDHSLALGSDGNVYSWGANKYGQLGDGTATDRLTPVQIP-KPTGVNRFTQVSA 821

Query: 320 GLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLG 354
           G G SLA+          G   + +WG N S QLG
Sbjct: 822 GTGFSLAL---------DGQGHVWAWGLNSSGQLG 847



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 73/266 (27%), Positives = 118/266 (44%), Gaps = 42/266 (15%)

Query: 39  ALGLPTS-LTGVGGDAYEPTRVP-GLPSDVT--SVSAGHYHSLAVTNNGAVWAWGRNNEV 94
           A GL TS   G G D    T VP   P+ VT    SAG     A++ NG ++AWG N   
Sbjct: 399 AWGLNTSGRLGDGTDIQRFTPVPVRQPAGVTFSQFSAGDTSCFAISTNGDLYAWGWNGYG 458

Query: 95  QLGRGA-LESRATWNDPKRVEGLDQVNVCAAFASGVVSS----AIGDDGSLWVWGKSKRG 149
           +LG G+  E R T   P  +   D  +    +A  +V      AIG DG+L+ WG ++ G
Sbjct: 459 RLGDGSNAEDRRT---PTLISPPDGASAGFTWARVMVRDDHVLAIGSDGNLYSWGLNEYG 515

Query: 150 QLGL------GKDITEAIVPSRVEALAGEKIV--KVSFGWGHALAQTEDGKLFGWGYSAD 201
           QLG+      G  I+   +  +  +   +K    +++ GW  + A   DG L+ WG++  
Sbjct: 516 QLGIKDINTDGSYISRPHIVDQSTSSTAQKFTWTQINAGWRESSALGSDGNLYTWGWNNG 575

Query: 202 GRIGN--------------LGKALESSPLDSNI-----DRSSESDQEISSSTIEKAQKLV 242
           G++G+              L  +L + PL  ++     DR+   D + + +  + A    
Sbjct: 576 GQLGDPTVPIGTDNSQAMRLTPSLAAFPLSPDVTAVKFDRTLGRDLKRAGTNWQVATPAH 635

Query: 243 SEGMEKEKYMPIIWEPFLVEGVEVVD 268
            +G  K     I W  +  +  E++D
Sbjct: 636 RKGQIKAA---ITWNLYGPQPDEILD 658



 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 55/221 (24%), Positives = 94/221 (42%), Gaps = 45/221 (20%)

Query: 168 ALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESD 227
           A  G K  +++ G  H+LA   DG L+ WG ++ G++G+    L  +P+ +N  + + + 
Sbjct: 200 ATRGIKFSQITSGATHSLALGSDGSLYAWGDNSSGQVGDNSTTLRQTPVKTN--KPANAS 257

Query: 228 QEISSSTI--------------------EKAQKLVSEGMEKEKYMPI-IWEPFLVEG-VE 265
            + + +TI                       +  + +G  + K  P+ + +P  V     
Sbjct: 258 DQFTFTTIAAGDHSSLAIGSDGNLYAWGNNTRGQLGDGTTENKLTPVKVPKPAGVSNEFT 317

Query: 266 VVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGM-FPVDINFHPVSISSGLG-- 322
              ++  +DH+L LG N  L + G N YGQLG      G   P   +  PV +S+  G  
Sbjct: 318 WTQVSARWDHTLALGSNHNLYAWGWNGYGQLGNTSVPTGSDNPAAYSSKPVLVSTPAGVT 377

Query: 323 ---------HSLAICEVRSSNVTGGARGIVSWGWNRSSQLG 354
                    HSLA+         G  + + +WG N S +LG
Sbjct: 378 FTQLSAGRYHSLAL---------GSDKQLYAWGLNTSGRLG 409



 Score = 45.8 bits (107), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 33/115 (28%), Positives = 46/115 (40%), Gaps = 7/115 (6%)

Query: 254 IIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFH 313
           +   P    G++   I  G  HSL LG +G L + G N  GQ+G     +   PV  N  
Sbjct: 194 VTLTPPATRGIKFSQITSGATHSLALGSDGSLYAWGDNSSGQVGDNSTTLRQTPVKTN-K 252

Query: 314 PVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLG------RMGPDNVP 362
           P + S     +       SS   G    + +WG N   QLG      ++ P  VP
Sbjct: 253 PANASDQFTFTTIAAGDHSSLAIGSDGNLYAWGNNTRGQLGDGTTENKLTPVKVP 307


>gi|242014091|ref|XP_002427731.1| hect E3 ubiquitin ligase, putative [Pediculus humanus corporis]
 gi|212512172|gb|EEB14993.1| hect E3 ubiquitin ligase, putative [Pediculus humanus corporis]
          Length = 4834

 Score = 88.2 bits (217), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 65/190 (34%), Positives = 94/190 (49%), Gaps = 12/190 (6%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVT---SVSAGHYHSLAVTNNGAV 85
           V ++G G+ G LG      G   D   PT V GL        +  +G   +LAVTN G V
Sbjct: 594 VYTWGRGNYGRLG-----HGTSEDHTVPTLVVGLKDYFIVDIACGSGDAQTLAVTNTGLV 648

Query: 86  WAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGK 145
           ++WG     +LG G  +   T   PK +E L  + V   +     S A+   GS++ WGK
Sbjct: 649 FSWGDGGYGKLGTGGSDGSKT---PKLIEKLQDIEVARVYCGSQFSLALTKSGSVYTWGK 705

Query: 146 SKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIG 205
               +LG G +      P  VE L G+ I KV+ G GH LA T+DG+++GWG + +G++G
Sbjct: 706 GDNHRLGHGSE-NHVRFPKLVEGLNGKCIKKVAVGSGHVLALTDDGEVYGWGRNDNGQVG 764

Query: 206 NLGKALESSP 215
              +   S P
Sbjct: 765 ETSETNVSEP 774



 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 86/302 (28%), Positives = 145/302 (48%), Gaps = 39/302 (12%)

Query: 19   IFMRSASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDV---TSVSAGHYH 75
            +F+ S  G  + + G+G+ G LGL     G   +   P ++  L   V    +V +G  H
Sbjct: 3030 LFIVSYDG-KLYACGEGTNGRLGL-----GHSNNVATPCQLTSLNQYVIKKVAVHSGGKH 3083

Query: 76   SLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIG 135
            ++A+T +G V++WG   + +LG    ++R + + PK +E L    +         S+AI 
Sbjct: 3084 AMALTLDGKVFSWGEGEDGKLGH---DNRLSLDRPKMIEALKSKRIRDIACGSSHSAAIS 3140

Query: 136  DDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGW--GHALAQTEDGKL 193
              G L+ WG  + G+LG G ++T+ + P  V+AL G  IV+V+ G      LA + +G +
Sbjct: 3141 STGELFTWGLGEYGRLGHGDNLTQ-LRPKLVKALLGHHIVQVACGSRDAQTLALSAEGLV 3199

Query: 194  FGWGYSADGRIGNLGK-ALESSPLDSNIDRSS-------ESDQEISSSTIEKAQKLVSEG 245
            F WG   DG  G LG+   E   +  NI+R +       E   + S + + K  ++ + G
Sbjct: 3200 FSWG---DGDFGKLGRGGSEGCDIPHNIERLNGLGVCMIECGAQFSLA-LTKFGQVYTWG 3255

Query: 246  MEKEKYMPI-------IWEPFLVEGV---EVVDIACGFDHSLVLGRNGVLLSCGSNVYGQ 295
              K  Y  +       + +P LVE +   ++V +A G  H L     G + + G N +GQ
Sbjct: 3256 --KGDYFRLGHGSDQHVRKPTLVESLSEKKIVHVAVGALHCLCATDQGQVYAWGDNDHGQ 3313

Query: 296  LG 297
             G
Sbjct: 3314 QG 3315



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 79/313 (25%), Positives = 139/313 (44%), Gaps = 61/313 (19%)

Query: 68   SVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFAS 127
            +V++G  H LA++ +G V++WG  ++ +LG G   ++   + P+ ++ L    +      
Sbjct: 4059 AVNSGGKHCLALSTDGKVYSWGEGDDGKLGHG---NKNGCDHPQLIDALQGKEIVDIACG 4115

Query: 128  GVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHA--L 185
            G  S+A+   G ++ WGK + G+LG G D  + + P  VE L G K++ ++ G G A  L
Sbjct: 4116 GAHSAAVTAGGEIYTWGKGRYGRLGHG-DSEDQMKPKLVETLIGFKVIDIACGSGDAQTL 4174

Query: 186  AQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEG 245
              T+D  ++ WG   DG  G LG+                                 S+G
Sbjct: 4175 CITDDDNVWSWG---DGDYGKLGRG-------------------------------GSDG 4200

Query: 246  MEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGM 305
             +    +P+  E   + G+ VV + CG   S+ L R+G + + G   Y +LG    +   
Sbjct: 4201 CK----IPMKIES--LAGLGVVKVECGSQFSVALTRSGSVYTWGKGDYHRLGHGSDEHVR 4254

Query: 306  FPVDINF----HPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQL--GRMGPD 359
             P  I        + I++G  H +A  ++           + +WG N   QL  G M   
Sbjct: 4255 HPKKIAALQGKKIICIATGSLHCVACSDLGE---------VFTWGDNDEGQLGDGTMNAI 4305

Query: 360  NVPLVVEGLEGES 372
            + P +V  L+G++
Sbjct: 4306 HRPRLVVTLQGKN 4318



 Score = 72.8 bits (177), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 52/186 (27%), Positives = 90/186 (48%), Gaps = 12/186 (6%)

Query: 24   ASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVP---GLPSDVTSVSAGHYHSLAVT 80
             +G  + ++G G  G LG      G   D  +P  V    G      +  +G   +L +T
Sbjct: 4123 TAGGEIYTWGKGRYGRLG-----HGDSEDQMKPKLVETLIGFKVIDIACGSGDAQTLCIT 4177

Query: 81   NNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSL 140
            ++  VW+WG  +  +LGRG  +       P ++E L  + V         S A+   GS+
Sbjct: 4178 DDDNVWSWGDGDYGKLGRGGSDGCKI---PMKIESLAGLGVVKVECGSQFSVALTRSGSV 4234

Query: 141  WVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSA 200
            + WGK    +LG G D      P ++ AL G+KI+ ++ G  H +A ++ G++F WG + 
Sbjct: 4235 YTWGKGDYHRLGHGSD-EHVRHPKKIAALQGKKIICIATGSLHCVACSDLGEVFTWGDND 4293

Query: 201  DGRIGN 206
            +G++G+
Sbjct: 4294 EGQLGD 4299



 Score = 72.0 bits (175), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 56/181 (30%), Positives = 89/181 (49%), Gaps = 12/181 (6%)

Query: 29   VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLP-SDVTSVSAGHY--HSLAVTNNGAV 85
            + ++G G  G LG   +LT +      P  V  L    +  V+ G     +LA++  G V
Sbjct: 3145 LFTWGLGEYGRLGHGDNLTQL-----RPKLVKALLGHHIVQVACGSRDAQTLALSAEGLV 3199

Query: 86   WAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGK 145
            ++WG  +  +LGRG  E     + P  +E L+ + VC        S A+   G ++ WGK
Sbjct: 3200 FSWGDGDFGKLGRGGSEG---CDIPHNIERLNGLGVCMIECGAQFSLALTKFGQVYTWGK 3256

Query: 146  SKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIG 205
                +LG G D      P+ VE+L+ +KIV V+ G  H L  T+ G+++ WG +  G+ G
Sbjct: 3257 GDYFRLGHGSD-QHVRKPTLVESLSEKKIVHVAVGALHCLCATDQGQVYAWGDNDHGQQG 3315

Query: 206  N 206
            N
Sbjct: 3316 N 3316



 Score = 71.2 bits (173), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 58/181 (32%), Positives = 85/181 (46%), Gaps = 12/181 (6%)

Query: 29   VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLP-SDVTSVSAGHYHSLAVTNNGAVWA 87
            V S+G+G  G LG      G       P  +  L   ++  ++ G  HS AVT  G ++ 
Sbjct: 4076 VYSWGEGDDGKLG-----HGNKNGCDHPQLIDALQGKEIVDIACGGAHSAAVTAGGEIYT 4130

Query: 88   WGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVC-AAFASGVVSS-AIGDDGSLWVWGK 145
            WG+    +LG G  E +     PK VE L    V   A  SG   +  I DD ++W WG 
Sbjct: 4131 WGKGRYGRLGHGDSEDQMK---PKLVETLIGFKVIDIACGSGDAQTLCITDDDNVWSWGD 4187

Query: 146  SKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIG 205
               G+LG G       +P ++E+LAG  +VKV  G   ++A T  G ++ WG     R+G
Sbjct: 4188 GDYGKLGRGGS-DGCKIPMKIESLAGLGVVKVECGSQFSVALTRSGSVYTWGKGDYHRLG 4246

Query: 206  N 206
            +
Sbjct: 4247 H 4247



 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 84/328 (25%), Positives = 131/328 (39%), Gaps = 64/328 (19%)

Query: 56  PTRVPGLPSDVTSVSAGH---YHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKR 112
           P ++ G      S  A H    HSLA++ +G V++WG  +  +LG G   SR   + P +
Sbjct: 510 PEQIEGFDGKEISKLAAHADGKHSLALSCDGDVYSWGNGDGGRLGHGDNNSR---DQPTK 566

Query: 113 VEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGE 172
           +  L   NV         S+A+   G ++ WG+   G+LG G    +  VP+ V  L   
Sbjct: 567 ITELVGKNVIHISCGATYSAAVTSSGEVYTWGRGNYGRLGHGTS-EDHTVPTLVVGLKDY 625

Query: 173 KIVKVSFGWGHA--LAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEI 230
            IV ++ G G A  LA T  G +F WG                         +  SD   
Sbjct: 626 FIVDIACGSGDAQTLAVTNTGLVFSWGDGG-----------------YGKLGTGGSDGSK 668

Query: 231 SSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGS 290
           +   IEK Q                        +EV  + CG   SL L ++G + + G 
Sbjct: 669 TPKLIEKLQ-----------------------DIEVARVYCGSQFSLALTKSGSVYTWGK 705

Query: 291 NVYGQLGREKQDMGMFPV---DINFHPV-SISSGLGHSLAICEVRSSNVTGGARGIVSWG 346
               +LG   ++   FP     +N   +  ++ G GH LA+ +       G   G   WG
Sbjct: 706 GDNHRLGHGSENHVRFPKLVEGLNGKCIKKVAVGSGHVLALTD------DGEVYG---WG 756

Query: 347 WNRSSQLGRMGPDNV--PLVVEGLEGES 372
            N + Q+G     NV  P ++  L+G++
Sbjct: 757 RNDNGQVGETSETNVSEPTLLTLLQGKN 784



 Score = 65.1 bits (157), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 88/343 (25%), Positives = 144/343 (41%), Gaps = 77/343 (22%)

Query: 42   LPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHS-LAVTNNGAVWAWGRNNEVQLG--R 98
            LP +++ +  D  E   +P    +V ++S    HS L   +   V+ WG N++ QLG  +
Sbjct: 2950 LPLNVSFLATDYEE---IP----EVKTLSETSSHSKLWSDSPTKVFVWGLNDKDQLGGLK 3002

Query: 99   GALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDIT 158
            G+      +++   +  L  +++     S  + S    DG L+  G+   G+LGLG    
Sbjct: 3003 GSKVKVPVYSE--SLTALKPIHIAGGSKSLFIVSY---DGKLYACGEGTNGRLGLGHSNN 3057

Query: 159  EAIVPSRVEALAGEKIVKVSFGWG--HALAQTEDGKLFGWGYSADGRIGNLGKALESSPL 216
             A  P ++ +L    I KV+   G  HA+A T DGK+F WG   DG++G+  +       
Sbjct: 3058 VA-TPCQLTSLNQYVIKKVAVHSGGKHAMALTLDGKVFSWGEGEDGKLGHDNRL------ 3110

Query: 217  DSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVE---VVDIACGF 273
              ++DR                                   P ++E ++   + DIACG 
Sbjct: 3111 --SLDR-----------------------------------PKMIEALKSKRIRDIACGS 3133

Query: 274  DHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFHPVSISSGLGHSL--AICEVR 331
             HS  +   G L + G   YG+LG       +        P  + + LGH +    C  R
Sbjct: 3134 SHSAAISSTGELFTWGLGEYGRLGHGDNLTQL-------RPKLVKALLGHHIVQVACGSR 3186

Query: 332  SSNVTG-GARGIV-SWGWNRSSQLGRMGPD--NVPLVVEGLEG 370
             +      A G+V SWG     +LGR G +  ++P  +E L G
Sbjct: 3187 DAQTLALSAEGLVFSWGDGDFGKLGRGGSEGCDIPHNIERLNG 3229



 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 78/331 (23%), Positives = 133/331 (40%), Gaps = 60/331 (18%)

Query: 49   VGGDAYEPTRVPGLPSDVTS-----VSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALES 103
            +GG      +VP     +T+     ++ G      V+ +G ++A G     +LG G   +
Sbjct: 2998 LGGLKGSKVKVPVYSESLTALKPIHIAGGSKSLFIVSYDGKLYACGEGTNGRLGLGHSNN 3057

Query: 104  RATWNDPKRVEGLDQ--VNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAI 161
             AT   P ++  L+Q  +   A  + G  + A+  DG ++ WG+ + G+LG    ++   
Sbjct: 3058 VAT---PCQLTSLNQYVIKKVAVHSGGKHAMALTLDGKVFSWGEGEDGKLGHDNRLS-LD 3113

Query: 162  VPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNID 221
             P  +EAL  ++I  ++ G  H+ A +  G+LF WG    GR+G+     +  P      
Sbjct: 3114 RPKMIEALKSKRIRDIACGSSHSAAISSTGELFTWGLGEYGRLGHGDNLTQLRP------ 3167

Query: 222  RSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFD--HSLVL 279
                              KLV   +                G  +V +ACG     +L L
Sbjct: 3168 ------------------KLVKALL----------------GHHIVQVACGSRDAQTLAL 3193

Query: 280  GRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFHPVSISSGLGHSLAICEVRSSNVTGGA 339
               G++ S G   +G+LGR   +    P     H +   +GLG  +  C  + S      
Sbjct: 3194 SAEGLVFSWGDGDFGKLGRGGSEGCDIP-----HNIERLNGLGVCMIECGAQFSLALTKF 3248

Query: 340  RGIVSWGWNRSSQLGRMGPDNV--PLVVEGL 368
              + +WG     +LG     +V  P +VE L
Sbjct: 3249 GQVYTWGKGDYFRLGHGSDQHVRKPTLVESL 3279



 Score = 58.5 bits (140), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 89/361 (24%), Positives = 148/361 (40%), Gaps = 76/361 (21%)

Query: 25   SGTAVVSFGDGSQGALG--------LPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHS 76
            SGT +  +G   +G LG        +PTS   +   A  P ++ G          G    
Sbjct: 3967 SGT-IYGWGHNHRGQLGGVEGPKVKIPTSCEALS--ALRPVQLVG----------GEQTL 4013

Query: 77   LAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNV--CAAFASGVVSSAI 134
            LAVT++G V+A G     +LG G  ++  T   P  +E +  + +   A  + G    A+
Sbjct: 4014 LAVTSDGKVYATGYGAGGRLGLGGTDTILT---PTLLESIQHIFIKKVAVNSGGKHCLAL 4070

Query: 135  GDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLF 194
              DG ++ WG+   G+LG G        P  ++AL G++IV ++ G  H+ A T  G+++
Sbjct: 4071 STDGKVYSWGEGDDGKLGHGNK-NGCDHPQLIDALQGKEIVDIACGGAHSAAVTAGGEIY 4129

Query: 195  GWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPI 254
             WG    GR+G+                                      G  +++  P 
Sbjct: 4130 TWGKGRYGRLGH--------------------------------------GDSEDQMKPK 4151

Query: 255  IWEPFLVEGVEVVDIACGF--DHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINF 312
            + E  +  G +V+DIACG     +L +  +  + S G   YG+LGR   D    P+ I  
Sbjct: 4152 LVETLI--GFKVIDIACGSGDAQTLCITDDDNVWSWGDGDYGKLGRGGSDGCKIPMKIES 4209

Query: 313  HPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPDNV--PLVVEGLEG 370
                  +GLG     C  + S     +  + +WG     +LG    ++V  P  +  L+G
Sbjct: 4210 -----LAGLGVVKVECGSQFSVALTRSGSVYTWGKGDYHRLGHGSDEHVRHPKKIAALQG 4264

Query: 371  E 371
            +
Sbjct: 4265 K 4265



 Score = 58.5 bits (140), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 47/157 (29%), Positives = 71/157 (45%), Gaps = 10/157 (6%)

Query: 31   SFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPS-DVTSVSAGHYHSLAVTNNGAVWAWG 89
            S+GDG  G LG      G       P ++  L    V  V  G   S+A+T +G+V+ WG
Sbjct: 4184 SWGDGDYGKLG-----RGGSDGCKIPMKIESLAGLGVVKVECGSQFSVALTRSGSVYTWG 4238

Query: 90   RNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRG 149
            + +  +LG G+ E       PK++  L    +       +   A  D G ++ WG +  G
Sbjct: 4239 KGDYHRLGHGSDEHV---RHPKKIAALQGKKIICIATGSLHCVACSDLGEVFTWGDNDEG 4295

Query: 150  QLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALA 186
            QLG G  +     P  V  L G+ I +V+ G  H+LA
Sbjct: 4296 QLGDGT-MNAIHRPRLVVTLQGKNINRVACGSAHSLA 4331



 Score = 55.8 bits (133), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 56/193 (29%), Positives = 88/193 (45%), Gaps = 16/193 (8%)

Query: 2    RLLKSVVHNHVNVLT-----SRIFMRSASGTAVVSFGDGSQGALGLPTSLTGVGGD-AYE 55
            +L+K+++ +H+  +      ++    SA G  V S+GDG  G LG   S    G D  + 
Sbjct: 3168 KLVKALLGHHIVQVACGSRDAQTLALSAEGL-VFSWGDGDFGKLGRGGS---EGCDIPHN 3223

Query: 56   PTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEG 115
              R+ GL   V  +  G   SLA+T  G V+ WG+ +  +LG G   S      P  VE 
Sbjct: 3224 IERLNGL--GVCMIECGAQFSLALTKFGQVYTWGKGDYFRLGHG---SDQHVRKPTLVES 3278

Query: 116  LDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIV 175
            L +  +       +      D G ++ WG +  GQ G G  +     PS V  L G ++ 
Sbjct: 3279 LSEKKIVHVAVGALHCLCATDQGQVYAWGDNDHGQQGNGTILVNR-KPSLVLNLEGVRVN 3337

Query: 176  KVSFGWGHALAQT 188
            +V+ G  H++A T
Sbjct: 3338 RVACGSSHSIAWT 3350



 Score = 38.1 bits (87), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 36/61 (59%), Gaps = 1/61 (1%)

Query: 135  GDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLF 194
            G  G+++ WG + RGQLG G +  +  +P+  EAL+  + V++  G    LA T DGK++
Sbjct: 3965 GGSGTIYGWGHNHRGQLG-GVEGPKVKIPTSCEALSALRPVQLVGGEQTLLAVTSDGKVY 4023

Query: 195  G 195
             
Sbjct: 4024 A 4024


>gi|403364753|gb|EJY82151.1| RCC1 domain containing protein [Oxytricha trifallax]
          Length = 1344

 Score = 88.2 bits (217), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 82/336 (24%), Positives = 142/336 (42%), Gaps = 73/336 (21%)

Query: 58  RVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKR--VEG 115
           + P     +T V+ G  H LA+T +  +++WG      LG G   +R    +P+   +E 
Sbjct: 283 KFPKHTKPITQVACGSAHILAITEDSELFSWGSGQYGALGFG---TRDDIFEPRHLIIEK 339

Query: 116 LDQVNVCAAFASGVVSS-AIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKI 174
            D        A G   S  +     +  WG+ + G+LG G D  + +VP  +  L+ +K 
Sbjct: 340 KDYTYFIEGIACGKYHSMCLTRKKKILTWGQGQGGRLGHG-DEDDVLVPKEIYDLSKKKP 398

Query: 175 VKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSST 234
           + +S G  H+ A +E   L+ WG    G  G LG  +++S                    
Sbjct: 399 IFISAGESHSAAISEKLNLYTWG---TGTYGRLGHGMDTS-------------------- 435

Query: 235 IEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYG 294
            EK  KL+ +                ++  E++ ++CG  H+L +   G + + G   YG
Sbjct: 436 -EKKPKLIED----------------LDQYEIIHVSCGAFHTLAITGQGTVYAFGQGKYG 478

Query: 295 QLG-REKQDMGMF--PVDINFHPV--------------SISSGLGHSLAICEVRSSNVTG 337
           +LG   KQ  G+F  P  I+F+ V              +I +  G++ ++C  +S     
Sbjct: 479 KLGINRKQREGVFSRPEKISFYKVGVEPQEMLVQDKNEAILAAAGYNHSLCLAKSGK--- 535

Query: 338 GARGIVSWGWNRSSQLGRMG--PDNVPLVVEGLEGE 371
               I SWG+N    LGR     +++P+ +  + GE
Sbjct: 536 ----IYSWGYNGKGLLGRQKGFEEHLPIEIGQIPGE 567



 Score = 87.0 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 75/291 (25%), Positives = 125/291 (42%), Gaps = 46/291 (15%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDV-TSVSAGHYHSLAVTNNGAVWA 87
           ++++G G  G LG      G   D   P  +  L       +SAG  HS A++    ++ 
Sbjct: 365 ILTWGQGQGGRLG-----HGDEDDVLVPKEIYDLSKKKPIFISAGESHSAAISEKLNLYT 419

Query: 88  WGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSK 147
           WG     +LG G   S      PK +E LDQ  +         + AI   G+++ +G+ K
Sbjct: 420 WGTGTYGRLGHGMDTSE---KKPKLIEDLDQYEIIHVSCGAFHTLAITGQGTVYAFGQGK 476

Query: 148 RGQLGLGKDITEAIVPSRVEALAGEKI---------------VKVSFGWGHALAQTEDGK 192
            G+LG+ +   E +  SR E ++  K+               +  + G+ H+L   + GK
Sbjct: 477 YGKLGINRKQREGVF-SRPEKISFYKVGVEPQEMLVQDKNEAILAAAGYNHSLCLAKSGK 535

Query: 193 LFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKA---QKLVSEGMEKE 249
           ++ WGY+  G +G      E  P++           +I    I K     +L+  G  K+
Sbjct: 536 IYSWGYNGKGLLGRQKGFEEHLPIEIG---------QIPGELIGKIPNIDELIQRGDLKQ 586

Query: 250 KYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREK 300
           +      E F     EV+ +ACG  +++ L   G +   GSN YGQL ++K
Sbjct: 587 E------ETF---SYEVIQVACGVLNTVSLTNGGEVYVFGSNAYGQLAKDK 628



 Score = 68.9 bits (167), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 80/324 (24%), Positives = 138/324 (42%), Gaps = 38/324 (11%)

Query: 52  DAYEPTRVPGLPSDVTS----VSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATW 107
           D+ E   +   P + T     ++ G  H  A++    ++ WGRN+E QLG G +      
Sbjct: 652 DSSEQMSLIKFPGETTVRINYIACGGEHIFAISRMNELFGWGRNDEGQLGLGFVSDFTA- 710

Query: 108 NDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVE 167
            +P  +  +   N+         S+A+   G L+V G  + G+LGLG+ + +  + S   
Sbjct: 711 -EPTLIRQIAHKNIQMIACGDNYSAAVSAFGELFVTGNLENGKLGLGQALKKGFLLSFTL 769

Query: 168 ALAGEKIVKVSFGWGHALA--------QTEDGKLFGWGYSADGRIGNLGKALESSPLDSN 219
                 I  V+ G  H LA          +DG  + WG +  G++G   K  E S +   
Sbjct: 770 IQNLAPIKSVACGPNHMLAIADYNPDHPIKDGMCYSWGRNWKGQLGIGSK--EDSNVPKK 827

Query: 220 IDRSSESDQEIS-----SSTIEKAQKLVSEGMEK----EKYMPIIWEPFLVEGVE---VV 267
           I  + E  ++++     S  +    ++   G  K     K    +  P L++ +E   + 
Sbjct: 828 IHNAKERFKKVACGQDFSIGLTYGNQVYLWGNNKYFCDSKITKDVDIPQLLQALEQAQIK 887

Query: 268 DIACGFDHSLVLGRNGVLLSCGSNVYGQLGR-EKQD--------MGMFPV-DINFHPVSI 317
           DIAC +    VL   G +L  GS +  ++ + +K+D        +  FP+   +F   +I
Sbjct: 888 DIACSYKFCSVLNDKGEILIWGSYLTDRIKQNQKKDKKSQNHLAITKFPMRKFDFLMETI 947

Query: 318 SSGLGHSLAICEVRSSNVTGGARG 341
           S+G  HS A+   RS    G A G
Sbjct: 948 SAGQNHSAAVSVKRSLYTWGHAEG 971



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 89/405 (21%), Positives = 161/405 (39%), Gaps = 89/405 (21%)

Query: 31  SFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPS-DVTSVSAGHYHSLAVTNNGAVWAWG 89
           ++G G+ G LG      G+     +P  +  L   ++  VS G +H+LA+T  G V+A+G
Sbjct: 419 TWGTGTYGRLG-----HGMDTSEKKPKLIEDLDQYEIIHVSCGAFHTLAITGQGTVYAFG 473

Query: 90  RNNEVQLGRGALESRATWNDPKRVE----GL--------DQVNVCAAFASGVVSSAIGDD 137
           +    +LG    +    ++ P+++     G+        D+     A A    S  +   
Sbjct: 474 QGKYGKLGINRKQREGVFSRPEKISFYKVGVEPQEMLVQDKNEAILAAAGYNHSLCLAKS 533

Query: 138 GSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGE------------------------- 172
           G ++ WG + +G LG  K   E + P  +  + GE                         
Sbjct: 534 GKIYSWGYNGKGLLGRQKGFEEHL-PIEIGQIPGELIGKIPNIDELIQRGDLKQEETFSY 592

Query: 173 KIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGN--------------------LGKALE 212
           ++++V+ G  + ++ T  G+++ +G +A G++                        +AL+
Sbjct: 593 EVIQVACGVLNTVSLTNGGEVYVFGSNAYGQLAKDKDQTTFRKYKKQDQNNNNDNSQALD 652

Query: 213 SSPLDSNIDRSSESDQEISSS--------TIEKAQKLVSEGMEKEKYMPIIW------EP 258
           SS   S I    E+   I+           I +  +L   G   E  + + +      EP
Sbjct: 653 SSEQMSLIKFPGETTVRINYIACGGEHIFAISRMNELFGWGRNDEGQLGLGFVSDFTAEP 712

Query: 259 FLVEGV---EVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLG----REKQDMGMFPVDIN 311
            L+  +    +  IACG ++S  +   G L   G+   G+LG     +K  +  F +  N
Sbjct: 713 TLIRQIAHKNIQMIACGDNYSAAVSAFGELFVTGNLENGKLGLGQALKKGFLLSFTLIQN 772

Query: 312 FHPV-SISSGLGHSLAICEVRSSN-VTGGARGIVSWGWNRSSQLG 354
             P+ S++ G  H LAI +    + +  G     SWG N   QLG
Sbjct: 773 LAPIKSVACGPNHMLAIADYNPDHPIKDGM--CYSWGRNWKGQLG 815



 Score = 44.3 bits (103), Expect = 0.097,   Method: Composition-based stats.
 Identities = 47/189 (24%), Positives = 76/189 (40%), Gaps = 32/189 (16%)

Query: 31  SFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGR 90
           S+G   +G LG+     G   D+  P ++         V+ G   S+ +T    V+ WG 
Sbjct: 805 SWGRNWKGQLGI-----GSKEDSNVPKKIHNAKERFKKVACGQDFSIGLTYGNQVYLWGN 859

Query: 91  NNEVQLGRGALESRAT--WNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWG---- 144
           N          +S+ T   + P+ ++ L+Q  +     S    S + D G + +WG    
Sbjct: 860 NKYF------CDSKITKDVDIPQLLQALEQAQIKDIACSYKFCSVLNDKGEILIWGSYLT 913

Query: 145 --------KSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGW 196
                   K K+ Q  L   IT+   P R      E I   S G  H+ A +    L+ W
Sbjct: 914 DRIKQNQKKDKKSQNHLA--ITK--FPMRKFDFLMETI---SAGQNHSAAVSVKRSLYTW 966

Query: 197 GYSADGRIG 205
           G++  GR+G
Sbjct: 967 GHAEGGRLG 975


>gi|148263541|ref|YP_001230247.1| regulator of chromosome condensation, RCC1 [Geobacter
           uraniireducens Rf4]
 gi|146397041|gb|ABQ25674.1| regulator of chromosome condensation, RCC1 [Geobacter
           uraniireducens Rf4]
          Length = 1919

 Score = 88.2 bits (217), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 93/311 (29%), Positives = 129/311 (41%), Gaps = 63/311 (20%)

Query: 60  PGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQV 119
           PG  +  TS  +  YH+  V N+G +W WG N   QLG G   +R   N P ++ G D  
Sbjct: 73  PGPENSGTSRISASYHTAEVKNDGTLWTWGANWSGQLGDGTYNNR---NYPMQI-GTD-T 127

Query: 120 NVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSF 179
           N     A    S A+  DG+LW WG +  GQLG  K       P ++ A A    V ++ 
Sbjct: 128 NWTVVAAGERHSIALRSDGTLWAWGDNSSGQLGDPKIGIGTSTPQQIGASA--DWVAIAA 185

Query: 180 GWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQ 239
           G  H+LA   DG L+ WG    G  G L  A + S     ID  S               
Sbjct: 186 GAYHSLALKTDGSLWAWG---SGWSGQLEMASDQSDTPLQIDSESR-------------- 228

Query: 240 KLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGRE 299
                           W          V IA G+ HS+ +  +G L + G N  GQLG  
Sbjct: 229 ----------------W----------VAIAAGYTHSVAIKSDGTLWAWGDNSSGQLGDG 262

Query: 300 KQDMGMFPVDI--NFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMG 357
             D    PV +  + + ++IS+G+ H++AI    S         +  WG N S QLG   
Sbjct: 263 TYDGSNIPVQVGGDTNWIAISAGMSHTVAIKSDGS---------LWGWGGNWSGQLGTGT 313

Query: 358 PD--NVPLVVE 366
            D  N+P  ++
Sbjct: 314 NDSQNIPTRID 324



 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 78/292 (26%), Positives = 139/292 (47%), Gaps = 48/292 (16%)

Query: 61  GLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGL---D 117
           G  ++ T V+AG  HS+A+ ++G +WAWG N+  QLG           DPK   G     
Sbjct: 124 GTDTNWTVVAAGERHSIALRSDGTLWAWGDNSSGQLG-----------DPKIGIGTSTPQ 172

Query: 118 QVNVCA---AFASGVVSS-AIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEK 173
           Q+   A   A A+G   S A+  DGSLW WG    GQL +  D  ++  P ++++ +  +
Sbjct: 173 QIGASADWVAIAAGAYHSLALKTDGSLWAWGSGWSGQLEMASD--QSDTPLQIDSES--R 228

Query: 174 IVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSS 233
            V ++ G+ H++A   DG L+ WG ++ G++G+      + P+    D +  +     S 
Sbjct: 229 WVAIAAGYTHSVAIKSDGTLWAWGDNSSGQLGDGTYDGSNIPVQVGGDTNWIAISAGMSH 288

Query: 234 TIEKAQK------------LVSEGMEKEKYMPIIWEPFLVEGVEVVD----IACGFDHSL 277
           T+                  +  G    + +P          +++ +    +A G +H++
Sbjct: 289 TVAIKSDGSLWGWGGNWSGQLGTGTNDSQNIP--------TRIDIANDWRSVAAGDEHTI 340

Query: 278 VLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFHPV--SISSGLGHSLAI 327
            L  +G + + G+N+YGQ+G   Q+  +FP+ I    +   IS+G  +SLA+
Sbjct: 341 ALKTDGTMWAWGNNIYGQVGDGTQENRLFPIQIGKDSLWSLISTGGYNSLAV 392



 Score = 68.6 bits (166), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 55/167 (32%), Positives = 77/167 (46%), Gaps = 27/167 (16%)

Query: 48   GVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATW 107
            G   D   P R+  + +D  S+SAG   ++A+  +G +WAWGRN+  QLG G+  +RA  
Sbjct: 940  GTNIDKESPVRI-AIDTDWKSISAGAGFTMAIKTDGTLWAWGRNSNGQLGDGSRLNRAL- 997

Query: 108  NDPKRV-EGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSR- 165
              P RV    D   V A +   V +     DGSLW WG +   QLG G      ++P   
Sbjct: 998  --PARVGSDTDWTQVYAGWGHVVATKT---DGSLWTWGANYSSQLGDGT-YERKLLPENS 1051

Query: 166  -------VEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIG 205
                   V  L  +  V +  G          G L+GWGY+ DG +G
Sbjct: 1052 GINNVLSVATLKEDSTVVIKSG----------GVLWGWGYNGDGELG 1088



 Score = 59.3 bits (142), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 51/176 (28%), Positives = 90/176 (51%), Gaps = 20/176 (11%)

Query: 31  SFGDGSQGALGLPTSLTGVGGDAYEPTRVP---GLPSDVTSVSAGHYHSLAVTNNGAVWA 87
           ++GD S G LG  T         Y+ + +P   G  ++  ++SAG  H++A+ ++G++W 
Sbjct: 250 AWGDNSSGQLGDGT---------YDGSNIPVQVGGDTNWIAISAGMSHTVAIKSDGSLWG 300

Query: 88  WGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSK 147
           WG N   QLG G  +S+   N P R++  +     AA     +  A+  DG++W WG + 
Sbjct: 301 WGGNWSGQLGTGTNDSQ---NIPTRIDIANDWRSVAAGDEHTI--ALKTDGTMWAWGNNI 355

Query: 148 RGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGR 203
            GQ+G G      + P ++   +   +  +S G  ++LA   DG L+ WG +++G 
Sbjct: 356 YGQVGDGTQ-ENRLFPIQIGKDSLWSL--ISTGGYNSLAVKADGTLWIWGPNSNGE 408



 Score = 58.9 bits (141), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 81/339 (23%), Positives = 138/339 (40%), Gaps = 83/339 (24%)

Query: 48   GVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATW 107
            G   D   P  + G+ +D      G  H++A+  +G +WAWG N + +LG G  + + T 
Sbjct: 789  GTTEDKLSPVHI-GMGTDWADAVVGEEHTVALKKDGGLWAWGYNGDGELGDGTTDGKLT- 846

Query: 108  NDPKRVEGLD---------------------------------------------QVNVC 122
              P R+ G D                                             Q+N  
Sbjct: 847  --PVRI-GFDNDWSALAAGSYYTLALKKNGTLWGWGYNGYGGLGDGSKTDKWEPVQINAD 903

Query: 123  AAFASGVVSS-----AIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKV 177
            A + +   S      A+  DGSLW WG++  GQ+G G +I +   P R+      K   +
Sbjct: 904  ADWVAIAASDTDHTVALKSDGSLWAWGQNNYGQVGDGTNIDKE-SPVRIAIDTDWK--SI 960

Query: 178  SFGWGHALAQTEDGKLFGWGYSADGRIGN---LGKALESSPLDSNID-----------RS 223
            S G G  +A   DG L+ WG +++G++G+   L +AL +  + S+ D            +
Sbjct: 961  SAGAGFTMAIKTDGTLWAWGRNSNGQLGDGSRLNRALPAR-VGSDTDWTQVYAGWGHVVA 1019

Query: 224  SESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNG 283
            +++D  + +     + +L  +G  + K +P   E   +  V  V      D ++V+   G
Sbjct: 1020 TKTDGSLWTWGANYSSQL-GDGTYERKLLP---ENSGINNVLSV-ATLKEDSTVVIKSGG 1074

Query: 284  VLLSCGSNVYGQLGREKQDMGMFPVDINFHPVSISSGLG 322
            VL   G N  G+LG    +  + P+     P+ + SG G
Sbjct: 1075 VLWGWGYNGDGELGSGTNEDIVIPI-----PILVPSGKG 1108



 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 65/241 (26%), Positives = 99/241 (41%), Gaps = 58/241 (24%)

Query: 131 SSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTED 190
           ++ + +DG+LW WG +  GQLG G        P ++       +V    G  H++A   D
Sbjct: 89  TAEVKNDGTLWTWGANWSGQLGDGT-YNNRNYPMQIGTDTNWTVVAA--GERHSIALRSD 145

Query: 191 GKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEK 250
           G L+ WG ++ G++G           D  I   + + Q+I +S                 
Sbjct: 146 GTLWAWGDNSSGQLG-----------DPKIGIGTSTPQQIGAS----------------- 177

Query: 251 YMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDI 310
                         + V IA G  HSL L  +G L + GS   GQL     D    P+ I
Sbjct: 178 -------------ADWVAIAAGAYHSLALKTDGSLWAWGSGWSGQL-EMASDQSDTPLQI 223

Query: 311 NFHP--VSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPD--NVPLVVE 366
           +     V+I++G  HS+AI    +         + +WG N S QLG    D  N+P+ V 
Sbjct: 224 DSESRWVAIAAGYTHSVAIKSDGT---------LWAWGDNSSGQLGDGTYDGSNIPVQVG 274

Query: 367 G 367
           G
Sbjct: 275 G 275



 Score = 52.4 bits (124), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 93/378 (24%), Positives = 154/378 (40%), Gaps = 53/378 (14%)

Query: 2    RLLKSVVHNHVNVLTSRIFMRSASGTAVVSFGDGSQGALGLPTSLTGVGGDA---YEPTR 58
            +L   V +  V V    I +   SG  + +  DG        T+ +GV G A   +    
Sbjct: 689  QLAYEVSYGTVLVKVDGITVSKTSGDLLDALTDGRHTVSVEATNASGVAGYADVTFVVDT 748

Query: 59   VPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRV-EGLD 117
             P +    T  +A  YH++ +  +G++W WG N   +LG G  E + +   P  +  G D
Sbjct: 749  TPPILVTPTVKAASGYHTVVIQKDGSLWTWGANWNGELGDGTTEDKLS---PVHIGMGTD 805

Query: 118  QVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRV------EALAG 171
              +        V   A+  DG LW WG +  G+LG G      + P R+       ALA 
Sbjct: 806  WADAVVGEEHTV---ALKKDGGLWAWGYNGDGELGDGT-TDGKLTPVRIGFDNDWSALAA 861

Query: 172  EKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNID------RSSE 225
                    G  + LA  ++G L+GWGY+  G +G+  K  +  P+  N D       +S+
Sbjct: 862  --------GSYYTLALKKNGTLWGWGYNGYGGLGDGSKTDKWEPVQINADADWVAIAASD 913

Query: 226  SDQEISSSTI-------EKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLV 278
            +D  ++  +        +     V +G   +K  P+     +    +   I+ G   ++ 
Sbjct: 914  TDHTVALKSDGSLWAWGQNNYGQVGDGTNIDKESPV----RIAIDTDWKSISAGAGFTMA 969

Query: 279  LGRNGVLLSCGSNVYGQLGREKQDMGMFPVDI--NFHPVSISSGLGHSLAICEVRSSNVT 336
            +  +G L + G N  GQLG   +     P  +  +     + +G GH +A         T
Sbjct: 970  IKTDGTLWAWGRNSNGQLGDGSRLNRALPARVGSDTDWTQVYAGWGHVVA---------T 1020

Query: 337  GGARGIVSWGWNRSSQLG 354
                 + +WG N SSQLG
Sbjct: 1021 KTDGSLWTWGANYSSQLG 1038


>gi|209154482|gb|ACI33473.1| RCC2 homolog [Salmo salar]
          Length = 496

 Score = 88.2 bits (217), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 82/298 (27%), Positives = 129/298 (43%), Gaps = 25/298 (8%)

Query: 66  VTSVSAGHY--HSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCA 123
           V+SV +G    HSL +T  G +W+WGRN + QLG G  +       PK +E L    V A
Sbjct: 124 VSSVVSGPCAAHSLLITTEGKLWSWGRNEKGQLGHGDTKRLEA---PKLIEALADEVVVA 180

Query: 124 AFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGH 183
           A      + A+ + G+ + +G++K GQLG G      + P+ ++   G+ +VKV+ G   
Sbjct: 181 AACGRNHTLALTEGGTAYSFGENKLGQLGQGNQTDAVLSPALIQ-YNGQPLVKVACGAEF 239

Query: 184 ALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVS 243
           ++     G L+ +G    G++G+             I R+     E    TI +   +  
Sbjct: 240 SMVVDCKGNLYSFGCPEYGQLGHNSDG-------KFIARAQRI--EFDCETIARRVTIFI 290

Query: 244 EGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDM 303
           E  +  +  P       V  V V D+ACG +H+L+L     + S G   YG+LG  +Q  
Sbjct: 291 EKSKDGQVTP-------VPNVVVRDVACGGNHTLILDSQKRVFSWGFGGYGRLGHTEQKD 343

Query: 304 GMFPVDINFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPDNV 361
            M P  +         G G S      + S       G+  WG   +S+   M P  V
Sbjct: 344 EMVPRLVKLFDF---PGRGASQIYTGYQCSFAVNEMGGLFFWGVTNTSRESTMYPKAV 398


>gi|428178045|gb|EKX46922.1| hypothetical protein GUITHDRAFT_86569 [Guillardia theta CCMP2712]
          Length = 306

 Score = 88.2 bits (217), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 100/354 (28%), Positives = 152/354 (42%), Gaps = 69/354 (19%)

Query: 23  SASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPG-LPSDVTSVSAGHYHSLAVTN 81
           S  G+ V S+G G  G LG     T       +P  V   L  +V  VS G+ H+  +  
Sbjct: 2   SREGSEVYSWGQGVLGQLGHGDEKT-----QRQPRLVVAFLGFNVRQVSCGNQHTAILME 56

Query: 82  NGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLW 141
           NG V+ +GR N  QLG+GA    A  + P  V  L   +V         + A+ D+G L+
Sbjct: 57  NGEVFTFGRGNFGQLGQGA-SVTANVSTPALVSALQGKHVKQVACGWHHTCALIDNGQLY 115

Query: 142 VWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSAD 201
            WG  + G+LG G ++ +A  P  VE+L G+++  V+ G  H+    E G L  WG    
Sbjct: 116 TWGSGEYGRLGHGDEVRQA-SPKLVESLQGKEVTFVAAGGFHSSVIIEGGNLLTWG---G 171

Query: 202 GRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLV 261
           G  G LG   E+       DR +                                 P +V
Sbjct: 172 GYFGQLGHGDET-------DRKT---------------------------------PKMV 191

Query: 262 EGVEVV---DIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDIN----FHP 314
           +GV+     ++ACG  H+L+L ++  + + GS  +G+LG   ++    P+ I        
Sbjct: 192 KGVQQCIAHEVACGTHHTLMLTQSQEVWTWGSGEFGKLGIGDEEKHAEPIMITALQGVGV 251

Query: 315 VSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGR--MGPDNVPLVVE 366
           + IS+G  HS A+    S  V      + +WG     QLG       N+P+VVE
Sbjct: 252 IHISTGGFHSAAL---TSEGV------LYTWGGGDKGQLGHGDENSQNIPVVVE 296


>gi|190610056|gb|ACE79739.1| At5g60870 [Arabidopsis thaliana]
          Length = 376

 Score = 88.2 bits (217), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 57/172 (33%), Positives = 94/172 (54%), Gaps = 5/172 (2%)

Query: 50  GGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWND 109
           GG    P++V  L   V SVS G + ++A+T  G +W WG N+  +LGRG  ++   W +
Sbjct: 179 GGGLSVPSKVKALTVPVASVSCGGFFTMALTKEGQLWNWGANSNYELGRG--DNLGGW-E 235

Query: 110 PKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEAL 169
           P  V  L+ V +      G  S A+ ++G +  WG    GQLG    +    VP+ +EAL
Sbjct: 236 PMPVPSLEGVRITQIACGGYHSLALTEEGKVLSWGHGGHGQLG-SSSLRNQKVPTEIEAL 294

Query: 170 AGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLG-KALESSPLDSNI 220
           A +KIV ++ G   + A T+ G+L+ WG + D ++G  G   ++++P++ N 
Sbjct: 295 ADKKIVFIASGGSSSAAITDGGELWMWGNAKDFQLGVPGLPEIQTTPVEVNF 346



 Score = 67.8 bits (164), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 77/282 (27%), Positives = 114/282 (40%), Gaps = 70/282 (24%)

Query: 66  VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWND--PKRVEGLDQVNVCA 123
           +  ++ G  HS+A+T+ G V+ WG       G GAL  +    +  P+RV+      + A
Sbjct: 85  IRCIALGGLHSVALTHQGDVFTWGYG-----GFGALGHKVYTRELVPRRVDDSWDCKISA 139

Query: 124 AFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEA------IVPSRVEALAGEKIVKV 177
              SG  ++AI + G L++WG+ +                    VPS+V+AL    +  V
Sbjct: 140 IATSGTHTAAITESGELYMWGREEGDGRLGLGPGRGPNEGGGLSVPSKVKALT-VPVASV 198

Query: 178 SFGWGHALAQTEDGKLFGWGYSAD---GRIGNLGKALESSPLDSNIDRSSESDQEISSST 234
           S G    +A T++G+L+ WG +++   GR  NLG                          
Sbjct: 199 SCGGFFTMALTKEGQLWNWGANSNYELGRGDNLGG------------------------- 233

Query: 235 IEKAQKLVSEGMEKEKYMPIIWEPFLV---EGVEVVDIACGFDHSLVLGRNGVLLSCGSN 291
                                WEP  V   EGV +  IACG  HSL L   G +LS G  
Sbjct: 234 ---------------------WEPMPVPSLEGVRITQIACGGYHSLALTEEGKVLSWGHG 272

Query: 292 VYGQLGREKQDMGMFPVDI----NFHPVSISSGLGHSLAICE 329
            +GQLG         P +I    +   V I+SG   S AI +
Sbjct: 273 GHGQLGSSSLRNQKVPTEIEALADKKIVFIASGGSSSAAITD 314



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 73/283 (25%), Positives = 118/283 (41%), Gaps = 35/283 (12%)

Query: 110 PKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEAL 169
           P R++  D  +     + G+  S +  DG LW+WGK   G+LG G++     VP+     
Sbjct: 23  PGRIDA-DSSSFRIGISCGLFHSGLTIDGDLWIWGKGDGGRLGFGQE-NSVFVPNLNPLF 80

Query: 170 AGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSP--LDSNIDR--SSE 225
               I  ++ G  H++A T  G +F WGY   G +G+     E  P  +D + D   S+ 
Sbjct: 81  EEHSIRCIALGGLHSVALTHQGDVFTWGYGGFGALGHKVYTRELVPRRVDDSWDCKISAI 140

Query: 226 SDQEISSSTIEKAQKLVSEGMEKEKYMPI------------IWEPFLVEG--VEVVDIAC 271
           +     ++ I ++ +L   G E+                  +  P  V+   V V  ++C
Sbjct: 141 ATSGTHTAAITESGELYMWGREEGDGRLGLGPGRGPNEGGGLSVPSKVKALTVPVASVSC 200

Query: 272 GFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDI----NFHPVSISSGLGHSLAI 327
           G   ++ L + G L + G+N   +LGR     G  P+ +          I+ G  HSLA+
Sbjct: 201 GGFFTMALTKEGQLWNWGANSNYELGRGDNLGGWEPMPVPSLEGVRITQIACGGYHSLAL 260

Query: 328 CEVRSSNVTGGARGIVSWGWNRSSQLGRMGPDN--VPLVVEGL 368
            E            ++SWG     QLG     N  VP  +E L
Sbjct: 261 TEEGK---------VLSWGHGGHGQLGSSSLRNQKVPTEIEAL 294


>gi|301094633|ref|XP_002896421.1| regulator of chromosome condensation (RCC1)-like protein
           [Phytophthora infestans T30-4]
 gi|262109510|gb|EEY67562.1| regulator of chromosome condensation (RCC1)-like protein
           [Phytophthora infestans T30-4]
          Length = 1289

 Score = 88.2 bits (217), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 78/291 (26%), Positives = 126/291 (43%), Gaps = 52/291 (17%)

Query: 64  SDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCA 123
           + +  V+ G  HSLA+T+ G ++ WG   + +LG G +  RA    P++V  L + +V +
Sbjct: 553 TTIAMVACGAQHSLAITDAGELYTWGSGEDGRLGHGDMRDRAV---PRKVMSLLRESVVS 609

Query: 124 AFASGVVSSAIGDDGSLWVWGKSKRGQLGLG----KDITEAIV--PSRVEALAGEKIVKV 177
           A   G  ++ +   GS++ +G+ + G+LGLG    +D    IV  P       G  I  V
Sbjct: 610 ASCGGAHTAVLTAKGSVFTFGRGRNGRLGLGDNKWRDTPHPIVGFPQ------GTSISLV 663

Query: 178 SFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEK 237
             GW    A    G +F WG + +G+ G LG           +DR      ++    ++K
Sbjct: 664 VCGWNFTAALDRQGSVFTWGKTGEGQCG-LGY----------VDRD-----QVVPRCVDK 707

Query: 238 AQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLG 297
            +                     V G  VVD+ACG+ H++VL  +G L S G   YGQLG
Sbjct: 708 LRD--------------------VAGSSVVDVACGYTHTVVLTASGELYSWGLGEYGQLG 747

Query: 298 REKQDMGMFPVDINFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWN 348
                  + P  +     ++ +    +   C    S  T   R + +WG N
Sbjct: 748 TGDVYQPL-PARVQLPADALCAPDQLARVYCGAFHSIATTEQRVMFAWGLN 797



 Score = 72.8 bits (177), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 72/274 (26%), Positives = 112/274 (40%), Gaps = 49/274 (17%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSD-VTSVSAGHYHSLAVTNNGAVWA 87
           + ++G G  G LG      G   D   P +V  L  + V S S G  H+  +T  G+V+ 
Sbjct: 574 LYTWGSGEDGRLG-----HGDMRDRAVPRKVMSLLRESVVSASCGGAHTAVLTAKGSVFT 628

Query: 88  WGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASG-VVSSAIGDDGSLWVWGKS 146
           +GR    +LG G  + R T   P  + G  Q    +    G   ++A+   GS++ WGK+
Sbjct: 629 FGRGRNGRLGLGDNKWRDT---PHPIVGFPQGTSISLVVCGWNFTAALDRQGSVFTWGKT 685

Query: 147 KRGQLGLGKDITEAIVPSRVEAL---AGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGR 203
             GQ GLG    + +VP  V+ L   AG  +V V+ G+ H +  T  G+L+ WG    G 
Sbjct: 686 GEGQCGLGYVDRDQVVPRCVDKLRDVAGSSVVDVACGYTHTVVLTASGELYSWGL---GE 742

Query: 204 IGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEG 263
            G LG      PL + +   +++                                 L   
Sbjct: 743 YGQLGTGDVYQPLPARVQLPADA---------------------------------LCAP 769

Query: 264 VEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLG 297
            ++  + CG  HS+      V+ + G N YG  G
Sbjct: 770 DQLARVYCGAFHSIATTEQRVMFAWGLNSYGACG 803



 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 60/208 (28%), Positives = 97/208 (46%), Gaps = 33/208 (15%)

Query: 11  HVNVLTSRIFMRSASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVP--GLP--SDV 66
           H  VLT++         +V +FG G  G LGL       G + +  T  P  G P  + +
Sbjct: 616 HTAVLTAK--------GSVFTFGRGRNGRLGL-------GDNKWRDTPHPIVGFPQGTSI 660

Query: 67  TSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRA----TWNDPKRVEGLDQVNVC 122
           + V  G   + A+   G+V+ WG+  E Q G G ++         +  + V G   V+V 
Sbjct: 661 SLVVCGWNFTAALDRQGSVFTWGKTGEGQCGLGYVDRDQVVPRCVDKLRDVAGSSVVDVA 720

Query: 123 AAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEA-----LAGEKIVKV 177
             +   VV +A    G L+ WG  + GQLG G D+ + + P+RV+       A +++ +V
Sbjct: 721 CGYTHTVVLTA---SGELYSWGLGEYGQLGTG-DVYQPL-PARVQLPADALCAPDQLARV 775

Query: 178 SFGWGHALAQTEDGKLFGWGYSADGRIG 205
             G  H++A TE   +F WG ++ G  G
Sbjct: 776 YCGAFHSIATTEQRVMFAWGLNSYGACG 803



 Score = 48.9 bits (115), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 50/181 (27%), Positives = 78/181 (43%), Gaps = 30/181 (16%)

Query: 126 ASGVVSSAIGDDGS--------LWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKV 177
           A  VV    GDD +        ++VWG+    + G        + P  V    G+ IV+V
Sbjct: 427 AVDVVELEEGDDATQVEEPSSCMYVWGRPPSLEGG----TPLVLRPKHVSLANGQPIVQV 482

Query: 178 SFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEK 237
           + G  H L  T  G ++ +G + D ++  +  A  +S L  N     ES + +S+S+   
Sbjct: 483 ACGGEHLLYLTSTGDVYSYGDNEDKKVAAVTVATHTSTLPDN-----ESTRVVSTSSF-L 536

Query: 238 AQKLVSE-GMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQL 296
           A  LV E  +EK            +    +  +ACG  HSL +   G L + GS   G+L
Sbjct: 537 APHLVEELALEKA-----------LHRTTIAMVACGAQHSLAITDAGELYTWGSGEDGRL 585

Query: 297 G 297
           G
Sbjct: 586 G 586



 Score = 42.7 bits (99), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 79/327 (24%), Positives = 111/327 (33%), Gaps = 112/327 (34%)

Query: 41  GLPTSLTGVGGDAYEPTRVP---GLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLG 97
           G P SL G       P  V    G P  +  V+ G  H L +T+ G V+++G N +    
Sbjct: 453 GRPPSLEGGTPLVLRPKHVSLANGQP--IVQVACGGEHLLYLTSTGDVYSYGDNED---- 506

Query: 98  RGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDI 157
                        K+V         AA      +S + D+ S  V   S           
Sbjct: 507 -------------KKV---------AAVTVATHTSTLPDNESTRVVSTSS---------- 534

Query: 158 TEAIVPSRVEALAGEK------IVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKAL 211
              + P  VE LA EK      I  V+ G  H+LA T+ G+L+ WG   DGR+G+     
Sbjct: 535 --FLAPHLVEELALEKALHRTTIAMVACGAQHSLAITDAGELYTWGSGEDGRLGH----- 587

Query: 212 ESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIAC 271
                                            G  +++ +P      L E   VV  +C
Sbjct: 588 ---------------------------------GDMRDRAVPRKVMSLLRES--VVSASC 612

Query: 272 GFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFHP-VSISSGLGHSLAICEV 330
           G  H+ VL   G + + G    G+LG         P     HP V    G   SL +C  
Sbjct: 613 GGAHTAVLTAKGSVFTFGRGRNGRLGLGDNKWRDTP-----HPIVGFPQGTSISLVVC-- 665

Query: 331 RSSNVTGGARGIVSWGWNRSSQLGRMG 357
                          GWN ++ L R G
Sbjct: 666 ---------------GWNFTAALDRQG 677


>gi|195490361|ref|XP_002093107.1| GE21143 [Drosophila yakuba]
 gi|194179208|gb|EDW92819.1| GE21143 [Drosophila yakuba]
          Length = 1057

 Score = 88.2 bits (217), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 79/292 (27%), Positives = 124/292 (42%), Gaps = 54/292 (18%)

Query: 24  ASGTAVVSFGDGSQGALGLPTSLTGVGGDAYE----PTRVPGLP-SDVTSVSAGHYHSLA 78
           ASG  +  +G  S G LGL       GG   E    P+++P  P + V  V+ GH H+L 
Sbjct: 2   ASGKELYCWGSTSHGQLGL-------GGIEDEQILTPSQIPWTPDTAVQQVACGHRHTLF 54

Query: 79  VTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDG 138
           +T NG V+A G N+  QLG      R     P  +  L    V         S A+ + G
Sbjct: 55  LTANGKVYACGSNDHSQLGHELPTKR-----PLLIPELQDYVVIQISCGSRHSLALSEWG 109

Query: 139 SLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGY 198
            +  WG +  GQLG   D     +P  V  L  + +V+++ G  H+LA T  G+L+ WG 
Sbjct: 110 QVLSWGDNDCGQLGHATDKEIVQLPKVVRQLVSKTVVQIACGNNHSLALTSCGELYSWGS 169

Query: 199 SADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEP 258
           +  G++G       +SP D      +  +  +  +T+                       
Sbjct: 170 NIYGQLG------VNSPKD-----LTHCNYPLRLTTL----------------------- 195

Query: 259 FLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDI 310
               G+ +  IACG +HS ++ ++G +   G N  GQLG   +    +P  +
Sbjct: 196 ---LGIPLAAIACGGNHSFLISKSGAVFGWGRNNCGQLGLNDEANRAYPTQL 244



 Score = 78.6 bits (192), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 77/292 (26%), Positives = 112/292 (38%), Gaps = 54/292 (18%)

Query: 19  IFMRSASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVT-SVSAGHYHSL 77
           +F+ +          D SQ    LPT           P  +P L   V   +S G  HSL
Sbjct: 53  LFLTANGKVYACGSNDHSQLGHELPTK---------RPLLIPELQDYVVIQISCGSRHSL 103

Query: 78  AVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDD 137
           A++  G V +WG N+  QLG      +     PK V  L    V         S A+   
Sbjct: 104 ALSEWGQVLSWGDNDCGQLGHAT--DKEIVQLPKVVRQLVSKTVVQIACGNNHSLALTSC 161

Query: 138 GSLWVWGKSKRGQLGLG--KDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFG 195
           G L+ WG +  GQLG+   KD+T    P R+  L G  +  ++ G  H+   ++ G +FG
Sbjct: 162 GELYSWGSNIYGQLGVNSPKDLTHCNYPLRLTTLLGIPLAAIACGGNHSFLISKSGAVFG 221

Query: 196 WGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPII 255
           WG +  G++G          L+   +R+                             P  
Sbjct: 222 WGRNNCGQLG----------LNDEANRA----------------------------YPTQ 243

Query: 256 WEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFP 307
            +     GV  V  ACG + S+ L   G + +CG+  YGQLG       M P
Sbjct: 244 LKTLRTLGVRFV--ACGDEFSVFLTNEGGVFTCGAGAYGQLGHGFSSNEMLP 293



 Score = 65.9 bits (159), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 69/235 (29%), Positives = 103/235 (43%), Gaps = 30/235 (12%)

Query: 140 LWVWGKSKRGQLGLGKDITEAIV-PSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGY 198
           L+ WG +  GQLGLG    E I+ PS++       + +V+ G  H L  T +GK++  G 
Sbjct: 7   LYCWGSTSHGQLGLGGIEDEQILTPSQIPWTPDTAVQQVACGHRHTLFLTANGKVYACGS 66

Query: 199 SADGRIGN---LGKALESSPLDSNIDRSSESDQEISSSTIEKAQKL---------VSEGM 246
           +   ++G+     + L    L   +          S +  E  Q L         +    
Sbjct: 67  NDHSQLGHELPTKRPLLIPELQDYVVIQISCGSRHSLALSEWGQVLSWGDNDCGQLGHAT 126

Query: 247 EKEKYMPIIWEPFLVEGV---EVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDM 303
           +KE    I+  P +V  +    VV IACG +HSL L   G L S GSN+YGQLG      
Sbjct: 127 DKE----IVQLPKVVRQLVSKTVVQIACGNNHSLALTSCGELYSWGSNIYGQLGVNS--- 179

Query: 304 GMFPVDINF--HPVSISSGLGHSLA--ICEVRSSNVTGGARGIVSWGWNRSSQLG 354
              P D+    +P+ +++ LG  LA   C    S +   +  +  WG N   QLG
Sbjct: 180 ---PKDLTHCNYPLRLTTLLGIPLAAIACGGNHSFLISKSGAVFGWGRNNCGQLG 231



 Score = 51.2 bits (121), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 44/133 (33%), Positives = 62/133 (46%), Gaps = 23/133 (17%)

Query: 245 GMEKEKYMP---IIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGRE-- 299
           G+E E+ +    I W P       V  +ACG  H+L L  NG + +CGSN + QLG E  
Sbjct: 22  GIEDEQILTPSQIPWTP----DTAVQQVACGHRHTLFLTANGKVYACGSNDHSQLGHELP 77

Query: 300 -KQDMGMFPVDINFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGP 358
            K+ + + P   ++  + IS G  HSLA+ E            ++SWG N   QLG    
Sbjct: 78  TKRPL-LIPELQDYVVIQISCGSRHSLALSEWGQ---------VLSWGDNDCGQLGHATD 127

Query: 359 DNV---PLVVEGL 368
             +   P VV  L
Sbjct: 128 KEIVQLPKVVRQL 140


>gi|116328469|ref|YP_798189.1| RCC1 domain-containing protein [Leptospira borgpetersenii serovar
           Hardjo-bovis str. L550]
 gi|116121213|gb|ABJ79256.1| RCC1 domain-containing protein [Leptospira borgpetersenii serovar
           Hardjo-bovis str. L550]
          Length = 506

 Score = 88.2 bits (217), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 86/298 (28%), Positives = 145/298 (48%), Gaps = 34/298 (11%)

Query: 29  VVSFGDGSQGALGLPTSLTG-----VGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNG 83
           V ++G+ ++G LG+  + T        G+   PT VPG+ +D    + G  H+L + ++G
Sbjct: 199 VYTWGNNAKGQLGIGNNNTNPANPRAAGNRQPPTLVPGI-NDAVMGAYGFNHALILKSDG 257

Query: 84  AVWAWGRNNEVQLGRGA--LESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLW 141
            V A+G+NN  QLG GA  L + +   +P  V GL   +V    A    S+A+   G ++
Sbjct: 258 TVVAFGQNNVGQLGNGANDLNADSFSMNPVAVVGLS--DVIQVIAGSEHSAALTKSGEVY 315

Query: 142 VWGKSKRGQLGLGK-DITEAI--VPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGY 198
           VWG+++ G LG G+     AI   P +VE L+G  I +++ G  H LA   DG+++ WG 
Sbjct: 316 VWGRNQYGNLGNGRLSAANAIQSTPVKVEGLSG--IKQIANGRDHILALASDGRIYSWGL 373

Query: 199 SADGRIGNLGK-ALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEK--------- 248
           +A G++G  G  +   +P  + +   + +    +  T  ++  ++  G  K         
Sbjct: 374 NASGQLGIGGNGSPNPTPNPTQVLNITNASSIWAGGT--QSFSILKNGEVKGWGANGNTA 431

Query: 249 -----EKYMPIIWEPF-LVEGVE-VVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGRE 299
                E     ++EP   V G++ V+   CG  H+  L  NG +   G N  G LGR+
Sbjct: 432 NLAIGETNTLKVYEPNKAVVGIDNVIHFGCGATHNFALLGNGEIYGWGWNFKGSLGRQ 489



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 75/261 (28%), Positives = 115/261 (44%), Gaps = 39/261 (14%)

Query: 67  TSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFA 126
           T +SAG  HS     NG V+  GRNN  QLG G   S    N+   V+     N+ +   
Sbjct: 129 TKLSAGGAHS-GFLKNGEVYTVGRNNFGQLGTG--NSTGDENNDVIVKLNSISNIFSIHF 185

Query: 127 SGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITE-------------AIVPSRVEALAGEK 173
           +   S AI  +G ++ WG + +GQLG+G + T               +VP   +A+ G  
Sbjct: 186 NQNNSMAITKNGRVYTWGNNAKGQLGIGNNNTNPANPRAAGNRQPPTLVPGINDAVMG-- 243

Query: 174 IVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSN---IDRSSESDQEI 230
               ++G+ HAL    DG +  +G +  G++GN    L +     N   +   S+  Q I
Sbjct: 244 ----AYGFNHALILKSDGTVVAFGQNNVGQLGNGANDLNADSFSMNPVAVVGLSDVIQVI 299

Query: 231 S----SSTIEKAQKLVSEGMEKEKYM---------PIIWEPFLVEGVE-VVDIACGFDHS 276
           +    S+ + K+ ++   G  +   +          I   P  VEG+  +  IA G DH 
Sbjct: 300 AGSEHSAALTKSGEVYVWGRNQYGNLGNGRLSAANAIQSTPVKVEGLSGIKQIANGRDHI 359

Query: 277 LVLGRNGVLLSCGSNVYGQLG 297
           L L  +G + S G N  GQLG
Sbjct: 360 LALASDGRIYSWGLNASGQLG 380



 Score = 55.5 bits (132), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 60/254 (23%), Positives = 106/254 (41%), Gaps = 44/254 (17%)

Query: 125 FASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHA 184
            ++G   S    +G ++  G++  GQLG G    +      V+  +   I  + F   ++
Sbjct: 131 LSAGGAHSGFLKNGEVYTVGRNNFGQLGTGNSTGDENNDVIVKLNSISNIFSIHFNQNNS 190

Query: 185 LAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSE 244
           +A T++G+++ WG +A G++G                        I ++    A    + 
Sbjct: 191 MAITKNGRVYTWGNNAKGQLG------------------------IGNNNTNPANPRAAG 226

Query: 245 GMEKEKYMPIIWEPFLVEGV-EVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDM 303
             +          P LV G+ + V  A GF+H+L+L  +G +++ G N  GQLG    D+
Sbjct: 227 NRQ---------PPTLVPGINDAVMGAYGFNHALILKSDGTVVAFGQNNVGQLGNGANDL 277

Query: 304 GMFPVDINFHPVSISSGLGHSLAICEVRSSNVTGGARG-IVSWGWNRSSQL--GRMGPDN 360
                 +N  PV++  GL   + +      +      G +  WG N+   L  GR+   N
Sbjct: 278 NADSFSMN--PVAV-VGLSDVIQVIAGSEHSAALTKSGEVYVWGRNQYGNLGNGRLSAAN 334

Query: 361 ----VPLVVEGLEG 370
                P+ VEGL G
Sbjct: 335 AIQSTPVKVEGLSG 348


>gi|23503098|sp|Q92834.2|RPGR_HUMAN RecName: Full=X-linked retinitis pigmentosa GTPase regulator;
           Flags: Precursor
 gi|119579846|gb|EAW59442.1| retinitis pigmentosa GTPase regulator, isoform CRA_b [Homo sapiens]
          Length = 1020

 Score = 88.2 bits (217), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 79/267 (29%), Positives = 124/267 (46%), Gaps = 51/267 (19%)

Query: 32  FGDGSQGALGLPTSLTGVGGDAYEPTRVPGL-PSDVTSVSAGHYHSLAVTNNGAVWAWGR 90
           FG  + G LGL     G      +PT V  L P  V   + G  H+L  T  G V+A G 
Sbjct: 59  FGSNNWGQLGL-----GSKSAISKPTCVKALKPEKVKLAACGRNHTLVSTEGGNVYATGG 113

Query: 91  NNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQ 150
           NNE QLG G  E R T++         ++   +A ++   S+A+ +DG L++WG +  GQ
Sbjct: 114 NNEGQLGLGDTEERNTFHVISFFTSEHKIKQLSAGSN--TSAALTEDGRLFMWGDNSEGQ 171

Query: 151 LGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKA 210
           +GL K+++   VP +V    G+ +  +S G+ H+   T DG+L+ +G   +G++G   + 
Sbjct: 172 IGL-KNVSNVCVPQQV--TIGKPVSWISCGYYHSAFVTTDGELYVFGEPENGKLGLPNQL 228

Query: 211 LESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIA 270
           L +                       +  +LVSE  EK                 V+ +A
Sbjct: 229 LGN----------------------HRTPQLVSEIPEK-----------------VIQVA 249

Query: 271 CGFDHSLVLGRNGVLLSCGSNVYGQLG 297
           CG +H++VL  N V  + G   +GQLG
Sbjct: 250 CGGEHTVVLTENAV-YTFGLGQFGQLG 275



 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 49/140 (35%), Positives = 75/140 (53%), Gaps = 9/140 (6%)

Query: 69  VSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGL--DQVNVCAAFA 126
           +S G  HS  VT N  ++ +G NN  QLG G   S++  + P  V+ L  ++V + A   
Sbjct: 40  LSCGDEHSAVVTGNNKLYMFGSNNWGQLGLG---SKSAISKPTCVKALKPEKVKLAACGR 96

Query: 127 SGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGE-KIVKVSFGWGHAL 185
           +  + S  G  G+++  G +  GQLGLG D  E      +     E KI ++S G   + 
Sbjct: 97  NHTLVSTEG--GNVYATGGNNEGQLGLG-DTEERNTFHVISFFTSEHKIKQLSAGSNTSA 153

Query: 186 AQTEDGKLFGWGYSADGRIG 205
           A TEDG+LF WG +++G+IG
Sbjct: 154 ALTEDGRLFMWGDNSEGQIG 173



 Score = 57.8 bits (138), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 53/184 (28%), Positives = 90/184 (48%), Gaps = 18/184 (9%)

Query: 33  GDGSQGALGLPTSLTGVGGDAYEPTRVP-GLPSDVTSVSAGHYHSLAVTNNGAVWAWGRN 91
           GD S+G +GL         +   P +V  G P  V+ +S G+YHS  VT +G ++ +G  
Sbjct: 165 GDNSEGQIGLKNV-----SNVCVPQQVTIGKP--VSWISCGYYHSAFVTTDGELYVFG-- 215

Query: 92  NEVQLGRGALESRATWND--PKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRG 149
            E + G+  L ++   N   P+ V  + +  +    A G   + +  + +++ +G  + G
Sbjct: 216 -EPENGKLGLPNQLLGNHRTPQLVSEIPEKVI--QVACGGEHTVVLTENAVYTFGLGQFG 272

Query: 150 QLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGK 209
           QLGLG  + E   P  +E +  + I  +S G  H    T+ G ++ +G   DGR G LG 
Sbjct: 273 QLGLGTFLFETSEPKVIENIRDQTISYISCGENHTALITDIGLMYTFG---DGRHGKLGL 329

Query: 210 ALES 213
            LE+
Sbjct: 330 GLEN 333


>gi|124359876|gb|ABN06170.1| Regulator of chromosome condensation/beta-lactamase-inhibitor
           protein II [Medicago truncatula]
          Length = 444

 Score = 88.2 bits (217), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 55/166 (33%), Positives = 88/166 (53%), Gaps = 5/166 (3%)

Query: 56  PTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEG 115
           P +V  LP  V +VS G + +LA+T  G +W WG N+  +LGRG  +    W  P+ V  
Sbjct: 252 PCKVKELPFPVAAVSCGGFFTLALTEEGQLWNWGANSNYELGRG--DRIGGWR-PRPVPS 308

Query: 116 LDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIV 175
           L++V V    + G  S A+ DDG +  W             +    +P+ VEA+A E I+
Sbjct: 309 LEKVRVIQIASGGYHSLALTDDGKVLSW-GHGGQGQLGHGSVENQKIPTLVEAIAHEHII 367

Query: 176 KVSFGWGHALAQTEDGKLFGWGYSADGRIGNLG-KALESSPLDSNI 220
            +S G   + A T++GKL+ WG ++D ++G  G  A++  P++ N 
Sbjct: 368 YISCGGASSAAVTDEGKLYMWGNASDSQLGVPGLPAIQPYPVEVNF 413



 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 75/286 (26%), Positives = 124/286 (43%), Gaps = 49/286 (17%)

Query: 87  AWGRNNEVQLGRGALESR---------------ATWNDPKRV---EGLDQVNVCAAFASG 128
           +WG+    QLG G  E+R                 +N P  +   EG +   V    + G
Sbjct: 50  SWGKGASGQLGGGVEETRLYPSPVTNLLLAPKFTLFNTPGLLPGPEGSNNKGVEVGISCG 109

Query: 129 VVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQT 188
           +  S +  DG LWVWGK   G+LGLG + +   VP+    L  E +  V+ G  H++A T
Sbjct: 110 LFHSCLVVDGGLWVWGKGDGGRLGLGHE-SSMFVPTLNPHL--ENVKSVALGGLHSVALT 166

Query: 189 EDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSS--ESDQEISSS-----TIEKAQKL 241
             G++F WGY   G  G LG ++ +  L   + + +   + + I++S      + ++  L
Sbjct: 167 SAGEVFTWGY---GGFGALGHSVYTRELFPRLVKGAWEGTIKHIATSGAHTAAVTESGDL 223

Query: 242 VSEGMEKEKYMPI------------IWEPFLVEGV--EVVDIACGFDHSLVLGRNGVLLS 287
              G E+ +                +  P  V+ +   V  ++CG   +L L   G L +
Sbjct: 224 YIWGREEGEGRLGLGPGRGPDHAGGLSIPCKVKELPFPVAAVSCGGFFTLALTEEGQLWN 283

Query: 288 CGSNVYGQLGREKQDMGMFPVDI----NFHPVSISSGLGHSLAICE 329
            G+N   +LGR  +  G  P  +        + I+SG  HSLA+ +
Sbjct: 284 WGANSNYELGRGDRIGGWRPRPVPSLEKVRVIQIASGGYHSLALTD 329



 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 84/331 (25%), Positives = 145/331 (43%), Gaps = 55/331 (16%)

Query: 33  GDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNN 92
           GDG +  LG  +S+       + PT  P L  +V SV+ G  HS+A+T+ G V+ WG   
Sbjct: 127 GDGGRLGLGHESSM-------FVPTLNPHL-ENVKSVALGGLHSVALTSAGEVFTWGYGG 178

Query: 93  EVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLG 152
              LG  ++ +R  +  P+ V+G  +  +     SG  ++A+ + G L++WG+ + G+  
Sbjct: 179 FGALGH-SVYTRELF--PRLVKGAWEGTIKHIATSGAHTAAVTESGDLYIWGR-EEGEGR 234

Query: 153 LGKDITEAI-------VPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIG 205
           LG              +P +V+ L    +  VS G    LA TE+G+L+ WG +++  +G
Sbjct: 235 LGLGPGRGPDHAGGLSIPCKVKELP-FPVAAVSCGGFFTLALTEEGQLWNWGANSNYELG 293

Query: 206 NLGK--ALESSPLDS-------------NIDRSSESDQEISSSTIEKAQKLVSEGMEKEK 250
              +       P+ S                 +   D ++ S       +L    +E +K
Sbjct: 294 RGDRIGGWRPRPVPSLEKVRVIQIASGGYHSLALTDDGKVLSWGHGGQGQLGHGSVENQK 353

Query: 251 YMPIIWEPFLVEGV---EVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREK-QDMGMF 306
                  P LVE +    ++ I+CG   S  +   G L   G+    QLG      +  +
Sbjct: 354 I------PTLVEAIAHEHIIYISCGGASSAAVTDEGKLYMWGNASDSQLGVPGLPAIQPY 407

Query: 307 PVDINF---------HPV-SISSGLGHSLAI 327
           PV++NF         H V SI++G  H++ +
Sbjct: 408 PVEVNFLMEDDGLGSHKVLSIANGASHAMCL 438


>gi|66810824|ref|XP_639119.1| regulator of chromosome condensation  domain-containing protein
            [Dictyostelium discoideum AX4]
 gi|60467743|gb|EAL65761.1| regulator of chromosome condensation  domain-containing protein
            [Dictyostelium discoideum AX4]
          Length = 2083

 Score = 88.2 bits (217), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 77/303 (25%), Positives = 126/303 (41%), Gaps = 48/303 (15%)

Query: 69   VSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGL-DQVNVCAAFAS 127
            VS G  H   ++ +G ++ WG+N   QLG G L+       PKR+E    +  +      
Sbjct: 1223 VSCGWDHVALISESGELFTWGKNQSGQLGHG-LDIGKIQTTPKRLEFFRGKSPIIMVECG 1281

Query: 128  GVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQ 187
            G  S  +  D  ++ WG+ K GQLG G        P  +E ++G+KI  ++ G+ H +  
Sbjct: 1282 GEHSICVDSDYVVYSWGQDKFGQLGHGTKSVSQNRPKIIEDISGQKIQAIAAGFAHTIVL 1341

Query: 188  TEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGME 247
             + G+L+ +GY   G++G+     +S P              I  +TI   Q        
Sbjct: 1342 KKSGELYSFGYGDQGQLGHGSFVSKSIP------------TRIELNTIVGIQH------- 1382

Query: 248  KEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFP 307
                           G ++  IACGF HS++   NG + S G    GQLG    +    P
Sbjct: 1383 --------------GGGKITQIACGFGHSVICSDNGEVYSWGLGKQGQLGHGNYESIARP 1428

Query: 308  --VDINFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPDN--VPL 363
              ++       IS G  +++A  ++++         + SWG     +LG     N   P 
Sbjct: 1429 RLIEALKGVTKISCGHFYTMATTDLKN---------VYSWGLGEHMKLGHGSDKNEATPR 1479

Query: 364  VVE 366
            VV+
Sbjct: 1480 VVD 1482



 Score = 78.6 bits (192), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 86/318 (27%), Positives = 128/318 (40%), Gaps = 61/318 (19%)

Query: 31   SFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLP---SDVTSVSAGHYHSLAVTNNGAVWA 87
            SFG G QG LG  + ++       E   + G+      +T ++ G  HS+  ++NG V++
Sbjct: 1349 SFGYGDQGQLGHGSFVSKSIPTRIELNTIVGIQHGGGKITQIACGFGHSVICSDNGEVYS 1408

Query: 88   WGRNNEVQLGRGALESRATWNDPKRVEGLDQVN--VCAAFASGVVSSAIGDDGSLWVWGK 145
            WG   + QLG G  ES A    P+ +E L  V    C  F     + A  D  +++ WG 
Sbjct: 1409 WGLGKQGQLGHGNYESIAR---PRLIEALKGVTKISCGHF----YTMATTDLKNVYSWGL 1461

Query: 146  SKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSAD---- 201
             +  +LG G D  EA  P  V+    + + K+  G  H +  T  G L     S D    
Sbjct: 1462 GEHMKLGHGSDKNEA-TPRVVDFFIQKNVSKIVCGLNHTITLTYPGDLNNNSLSNDDDVN 1520

Query: 202  ------------------------GRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEK 237
                                    GR G LG       L+ N   S      I +    +
Sbjct: 1521 DFIDLAPSTSNSSSSSSLTNDNNNGRSGRLG-------LNENSQVSP-----IYACGAGE 1568

Query: 238  AQKLVSEGMEKEKYM--PIIWEPFLVEGV---EVVDIACGFDHSLVLGRNGVLLSCGSNV 292
              KL   G  K  +   PI   P  ++GV    ++DI+CG D + ++  NG L   G   
Sbjct: 1569 HGKLGLGGDLKSPFFDKPI---PTAIKGVNALNLIDISCGTDFTAMITSNGALYVWGYGN 1625

Query: 293  YGQLGREKQDMGMFPVDI 310
            +GQ+G  K D    P+ I
Sbjct: 1626 FGQIGNGKTDDAWVPIRI 1643



 Score = 75.5 bits (184), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 62/242 (25%), Positives = 118/242 (48%), Gaps = 26/242 (10%)

Query: 64   SDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCA 123
            S +  V  G  HS+ V ++  V++WG++   QLG G      + N PK +E +    + A
Sbjct: 1273 SPIIMVECGGEHSICVDSDYVVYSWGQDKFGQLGHGT--KSVSQNRPKIIEDISGQKIQA 1330

Query: 124  AFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVE-------ALAGEKIVK 176
              A    +  +   G L+ +G   +GQLG G  ++++I P+R+E          G KI +
Sbjct: 1331 IAAGFAHTIVLKKSGELYSFGYGDQGQLGHGSFVSKSI-PTRIELNTIVGIQHGGGKITQ 1389

Query: 177  VSFGWGHALAQTEDGKLFGWGYSADGRIGN----------LGKALESSPLDS--NIDRSS 224
            ++ G+GH++  +++G+++ WG    G++G+          L +AL+     S  +    +
Sbjct: 1390 IACGFGHSVICSDNGEVYSWGLGKQGQLGHGNYESIARPRLIEALKGVTKISCGHFYTMA 1449

Query: 225  ESD-QEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNG 283
             +D + + S  + +  KL   G +K +  P + + F+ + V    I CG +H++ L   G
Sbjct: 1450 TTDLKNVYSWGLGEHMKL-GHGSDKNEATPRVVDFFIQKNVS--KIVCGLNHTITLTYPG 1506

Query: 284  VL 285
             L
Sbjct: 1507 DL 1508



 Score = 66.2 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 61/231 (26%), Positives = 99/231 (42%), Gaps = 44/231 (19%)

Query: 172  EKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIG---NLGKALESSPLDSNIDRSS---- 224
            ++ +KVS GW H    +E G+LF WG +  G++G   ++GK ++++P      R      
Sbjct: 1218 KRAIKVSCGWDHVALISESGELFTWGKNQSGQLGHGLDIGK-IQTTPKRLEFFRGKSPII 1276

Query: 225  ------------ESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACG 272
                        +SD  + S   +K  +L        +  P I E   + G ++  IA G
Sbjct: 1277 MVECGGEHSICVDSDYVVYSWGQDKFGQLGHGTKSVSQNRPKIIED--ISGQKIQAIAAG 1334

Query: 273  FDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFHPV-----------SISSGL 321
            F H++VL ++G L S G    GQLG         P  I  + +            I+ G 
Sbjct: 1335 FAHTIVLKKSGELYSFGYGDQGQLGHGSFVSKSIPTRIELNTIVGIQHGGGKITQIACGF 1394

Query: 322  GHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPDNV--PLVVEGLEG 370
            GHS+ IC             + SWG  +  QLG    +++  P ++E L+G
Sbjct: 1395 GHSV-ICSDNGE--------VYSWGLGKQGQLGHGNYESIARPRLIEALKG 1436



 Score = 45.8 bits (107), Expect = 0.036,   Method: Composition-based stats.
 Identities = 31/93 (33%), Positives = 48/93 (51%), Gaps = 9/93 (9%)

Query: 29   VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAW 88
            V S+G G QG LG      G       P  +  L   VT +S GH++++A T+   V++W
Sbjct: 1406 VYSWGLGKQGQLG-----HGNYESIARPRLIEALKG-VTKISCGHFYTMATTDLKNVYSW 1459

Query: 89   GRNNEVQLGRGALESRATWNDPKRVEGLDQVNV 121
            G    ++LG G+ ++ AT   P+ V+   Q NV
Sbjct: 1460 GLGEHMKLGHGSDKNEAT---PRVVDFFIQKNV 1489



 Score = 39.3 bits (90), Expect = 2.8,   Method: Composition-based stats.
 Identities = 36/125 (28%), Positives = 56/125 (44%), Gaps = 21/125 (16%)

Query: 258  PFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMF---PVDINFHP 314
            P L      + ++CG+DH  ++  +G L + G N  GQLG    D+G     P  + F  
Sbjct: 1212 PPLKNEKRAIKVSCGWDHVALISESGELFTWGKNQSGQLG-HGLDIGKIQTTPKRLEFFR 1270

Query: 315  -----VSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLG---RMGPDNVPLVVE 366
                 + +  G  HS  IC V S  V      + SWG ++  QLG   +    N P ++E
Sbjct: 1271 GKSPIIMVECGGEHS--IC-VDSDYV------VYSWGQDKFGQLGHGTKSVSQNRPKIIE 1321

Query: 367  GLEGE 371
             + G+
Sbjct: 1322 DISGQ 1326


>gi|147900291|ref|NP_001086738.1| HECT and RLD domain containing E3 ubiquitin protein ligase 4
           [Xenopus laevis]
 gi|83405253|gb|AAI10973.1| MGC81587 protein [Xenopus laevis]
          Length = 897

 Score = 88.2 bits (217), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 71/279 (25%), Positives = 124/279 (44%), Gaps = 49/279 (17%)

Query: 55  EPTRVPGLPSDV-TSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRV 113
           +P +V  L + +  +VS G  H+LA+ + G V++WG     Q+G    E       P+ +
Sbjct: 74  KPEQVGALDAQIIVAVSCGEAHTLALNDKGQVFSWGHAAHGQIGVSIAEDYIRV--PRNI 131

Query: 114 EGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEK 173
           + L  + +         S A+  + +++ WG+++ GQLGLG +  +   P  +++L+G  
Sbjct: 132 KSLSDIQIVQVACGHHHSLALSKESNIYSWGQNQYGQLGLGSEKRKESAPRHIKSLSGIP 191

Query: 174 IVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSS 233
              ++ G GH+ A T  G +FGWG +  G++G          L+   DR   SD  +  S
Sbjct: 192 FAHIAAGGGHSFALTISGAIFGWGRNKFGQLG----------LNDETDR---SDPALLKS 238

Query: 234 TIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVY 293
              ++QK++                          I CG DH+  L + G + + G+  Y
Sbjct: 239 L--RSQKIIY-------------------------ICCGEDHTAALTKEGGVFTFGAGGY 271

Query: 294 GQLGREKQDMGMFPVDINFHPV-----SISSGLGHSLAI 327
           GQLG       + P  + F  +      I+ G  H+LA 
Sbjct: 272 GQLGHNSASHEVNPRKV-FELMGNIVTQIACGRQHTLAF 309



 Score = 79.0 bits (193), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 74/273 (27%), Positives = 116/273 (42%), Gaps = 57/273 (20%)

Query: 87  AWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKS 146
            WG  +  QLG G ++      +P+R +     NV         +  + DDG+++  G +
Sbjct: 3   CWGNASFGQLGLGGIDEEVVI-EPRRCDFFINKNVRDVGCGNRHTGFVLDDGTVYTCGCN 61

Query: 147 KRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGN 206
             GQLG  K   +   P +V AL  + IV VS G  H LA  + G++F WG++A G+IG 
Sbjct: 62  DLGQLGHDKSRKK---PEQVGALDAQIIVAVSCGEAHTLALNDKGQVFSWGHAAHGQIG- 117

Query: 207 LGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEV 266
                                  I+   I   + + S                 +  +++
Sbjct: 118 ---------------------VSIAEDYIRVPRNIKS-----------------LSDIQI 139

Query: 267 VDIACGFDHSLVLGRNGVLLSCGSNVYGQLG----REKQDMGMFPVDINFHPVS-ISSGL 321
           V +ACG  HSL L +   + S G N YGQLG    + K+        ++  P + I++G 
Sbjct: 140 VQVACGHHHSLALSKESNIYSWGQNQYGQLGLGSEKRKESAPRHIKSLSGIPFAHIAAGG 199

Query: 322 GHSLAICEVRSSNVTGGARGIVSWGWNRSSQLG 354
           GHS A+       ++G    I  WG N+  QLG
Sbjct: 200 GHSFAL------TISG---AIFGWGRNKFGQLG 223


>gi|321471075|gb|EFX82049.1| hypothetical protein DAPPUDRAFT_210805 [Daphnia pulex]
          Length = 510

 Score = 88.2 bits (217), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 63/199 (31%), Positives = 99/199 (49%), Gaps = 11/199 (5%)

Query: 25  SGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPS------DVTSVSAGHYHSLA 78
           SG  +++F D  +       + + +G      T  P L S       V  V  G++H LA
Sbjct: 61  SGLHLLAFSDSGELYTWGYNTYSQLGNGNTNHTLTPSLVSGVLAGKTVIQVGCGNHHCLA 120

Query: 79  VTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRV-EGLDQVNVCAAFASGVVSSAIGDD 137
           +T+ G V+AWG+NN  Q G G    ++    P+RV  G+    V A     + S A+ DD
Sbjct: 121 LTSEGEVFAWGQNNGGQCGSGTTTGQSV---PRRVTSGIGGHKVVAIACGQLTSMALLDD 177

Query: 138 GSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWG 197
           G L+ WG +  G+LG+G +  +   P RV  L    I ++  G+ H LA T+ G+L+ WG
Sbjct: 178 GDLYGWGYNGNGELGIGNNNNQH-NPVRVSNLHKVFITQIVCGFAHCLALTDQGELYAWG 236

Query: 198 YSADGRIGNLGKALESSPL 216
            ++ G++G   K    SP+
Sbjct: 237 ANSYGQLGTGYKTHHLSPV 255



 Score = 85.5 bits (210), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 85/337 (25%), Positives = 135/337 (40%), Gaps = 63/337 (18%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGL-PSDVTSVSAGH-YHSLAVTNNGAVW 86
           V + G  S G LGL     G    A +P ++  L    +  ++ G   H LA +++G ++
Sbjct: 21  VYAMGCNSSGCLGL-----GDTASALQPRKIESLCKKKIKGLAYGSGLHLLAFSDSGELY 75

Query: 87  AWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSS-AIGDDGSLWVWGK 145
            WG N   QLG G      T   P  V G+           G     A+  +G ++ WG+
Sbjct: 76  TWGYNTYSQLGNGNTNHTLT---PSLVSGVLAGKTVIQVGCGNHHCLALTSEGEVFAWGQ 132

Query: 146 SKRGQLGLGKDITEAIVPSRVEA-LAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRI 204
           +  GQ G G    ++ VP RV + + G K+V ++ G   ++A  +DG L+GWGY+ +G +
Sbjct: 133 NNGGQCGSGTTTGQS-VPRRVTSGIGGHKVVAIACGQLTSMALLDDGDLYGWGYNGNGEL 191

Query: 205 GNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGV 264
           G              I  ++     +  S + K                          V
Sbjct: 192 G--------------IGNNNNQHNPVRVSNLHK--------------------------V 211

Query: 265 EVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFHPVSISSGLGHS 324
            +  I CGF H L L   G L + G+N YGQLG   +         +  PV ++  LG +
Sbjct: 212 FITQIVCGFAHCLALTDQGELYAWGANSYGQLGTGYKTH-------HLSPVIVAPELGKA 264

Query: 325 LAICEVRSSNVTGGAR---GIVSWGWNRSSQLGRMGP 358
           + I     S+++        I  WG  R   +    P
Sbjct: 265 VEIAACHLSHISAAMFHDGKIFMWGHCRGHSIFSPSP 301


>gi|79295482|ref|NP_001030623.1| regulator of chromosome condensation domain-containing protein
           [Arabidopsis thaliana]
 gi|332640300|gb|AEE73821.1| regulator of chromosome condensation domain-containing protein
           [Arabidopsis thaliana]
          Length = 310

 Score = 88.2 bits (217), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 86/279 (30%), Positives = 126/279 (45%), Gaps = 36/279 (12%)

Query: 87  AWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKS 146
           AWG   + QLG G  E +  W     VE L+  +V +  +    S AI DDG+++ WG +
Sbjct: 9   AWGSGEDGQLGIGTNEEKE-W--ACVVEALEPYSVRSVVSGSRNSLAICDDGTMFTWGWN 65

Query: 147 KRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGN 206
           +RG LG   +     +PSRV+ALA  KI + + G  H LA  + G+ + WG +  G+ G 
Sbjct: 66  QRGTLGHQPETKTENIPSRVKALANVKITQAAIGGWHCLAVDDQGRAYAWGGNEYGQCG- 124

Query: 207 LGKALESSPLDSNIDRSSESDQEISSSTIEKAQ-KLVSEG------MEKEKY-------- 251
                   PL   + R    D  I      K   + V+ G      + +E +        
Sbjct: 125 ------EEPLKDEMGRPVRRDIVIPKRCAPKLTVRQVAAGGTHSVVLTREGHVWTWGQPW 178

Query: 252 ----MPIIWEPFLVEGVEVVD-IACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMF 306
               +  I  P  V+G+E V  IA G  H+L L  +G LL+ G+N YGQLG         
Sbjct: 179 PPGDIKQISVPVRVQGLENVRLIAVGAFHNLALEEDGRLLAWGNNEYGQLGTGDTQPTSH 238

Query: 307 PVDI----NFHPVSISSGLGHSLAICEVRSSNVTGGARG 341
           PV +    +   V I++G  HS A+ +     V G  RG
Sbjct: 239 PVPVQGLDDLTLVDIAAGGWHSTALTD--KGEVYGWGRG 275



 Score = 74.3 bits (181), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 46/123 (37%), Positives = 71/123 (57%), Gaps = 5/123 (4%)

Query: 56  PTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEG 115
           P RV GL  +V  ++ G +H+LA+  +G + AWG N   QLG G  +  +    P  V+G
Sbjct: 189 PVRVQGL-ENVRLIAVGAFHNLALEEDGRLLAWGNNEYGQLGTGDTQPTS---HPVPVQG 244

Query: 116 LDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLG-KDITEAIVPSRVEALAGEKI 174
           LD + +    A G  S+A+ D G ++ WG+ + G+LGLG  D +  +VP +V  LA E I
Sbjct: 245 LDDLTLVDIAAGGWHSTALTDKGEVYGWGRGEHGRLGLGDNDKSSKMVPQKVNLLAEEDI 304

Query: 175 VKV 177
           ++V
Sbjct: 305 IQV 307



 Score = 67.8 bits (164), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 52/151 (34%), Positives = 79/151 (52%), Gaps = 11/151 (7%)

Query: 66  VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAF 125
           V  V+AG  HS+ +T  G VW WG+        G ++  +    P RV+GL+ V + A  
Sbjct: 152 VRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISV---PVRVQGLENVRLIAVG 204

Query: 126 ASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHAL 185
           A    + A+ +DG L  WG ++ GQLG G D      P  V+ L    +V ++ G  H+ 
Sbjct: 205 A--FHNLALEEDGRLLAWGNNEYGQLGTG-DTQPTSHPVPVQGLDDLTLVDIAAGGWHST 261

Query: 186 AQTEDGKLFGWGYSADGRIGNLGKALESSPL 216
           A T+ G+++GWG    GR+G LG   +SS +
Sbjct: 262 ALTDKGEVYGWGRGEHGRLG-LGDNDKSSKM 291



 Score = 65.9 bits (159), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 74/269 (27%), Positives = 106/269 (39%), Gaps = 64/269 (23%)

Query: 56  PTRVPGLPS-DVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALES---RATWND-- 109
           P+RV  L +  +T  + G +H LAV + G  +AWG N   Q G   L+    R    D  
Sbjct: 82  PSRVKALANVKITQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPLKDEMGRPVRRDIV 141

Query: 110 -PKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEA 168
            PKR     ++ V    A G  S  +  +G +W W     GQ     DI +  VP RV+ 
Sbjct: 142 IPKRCA--PKLTVRQVAAGGTHSVVLTREGHVWTW-----GQPWPPGDIKQISVPVRVQG 194

Query: 169 LAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQ 228
           L  E +  ++ G  H LA  EDG+L  WG +  G++G                     D 
Sbjct: 195 L--ENVRLIAVGAFHNLALEEDGRLLAWGNNEYGQLGT-------------------GDT 233

Query: 229 EISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVE---VVDIACGFDHSLVLGRNGVL 285
           + +S                         P  V+G++   +VDIA G  HS  L   G +
Sbjct: 234 QPTS------------------------HPVPVQGLDDLTLVDIAAGGWHSTALTDKGEV 269

Query: 286 LSCGSNVYGQLGREKQDMG--MFPVDINF 312
              G   +G+LG    D    M P  +N 
Sbjct: 270 YGWGRGEHGRLGLGDNDKSSKMVPQKVNL 298


>gi|148222256|ref|NP_001090238.1| NIMA-related kinase 8 [Xenopus laevis]
 gi|50417684|gb|AAH77830.1| Nek8 protein [Xenopus laevis]
          Length = 658

 Score = 88.2 bits (217), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 90/349 (25%), Positives = 140/349 (40%), Gaps = 44/349 (12%)

Query: 42  LPTSLTGV---GGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGR 98
           +P  L+ V   G     P R+P L ++V  VSAG      VT +G +  W     V  G 
Sbjct: 275 IPPPLSSVYTWGSGISNPLRLPMLNTEVVQVSAGRTQKAGVTKSGRLIMW-EATPVGTGA 333

Query: 99  GALESRATWNDPKRV----EGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLG 154
            +L        P+ +    EG   V +       + ++ + D G +  +G    G LG  
Sbjct: 334 SSLPGSIDHAQPQFISRFLEGQSGVTIKHVSCGDLFTACLTDRGIIMTFGSGSNGCLG-H 392

Query: 155 KDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESS 214
            +  +   P  VEAL G +IV VS G  HA+A + + ++F WG   +GR+G   +   +S
Sbjct: 393 DNFNDVTQPKIVEALLGYEIVHVSCGASHAIAVSNEKEVFSWGRGDNGRLGLGSQDSHNS 452

Query: 215 PLDSNIDRSSESDQEI----SSSTIEKAQKLVSEGM------------------------ 246
           P   NI +  E+ + +    SS  +  A +L++ G                         
Sbjct: 453 PQQVNIPQEYEAQKIVCGIDSSMILTVANQLLACGSNRFNKLGLDHILSASEPYSEEQVE 512

Query: 247 EKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMF 306
           E   + PI   P   E +   D+  G  HS V+   G   + GSN +GQLG         
Sbjct: 513 EAYTFTPIQSAPLNQEAILCADV--GTSHSAVVTALGQCYTFGSNQHGQLGTSVHRNSRV 570

Query: 307 PVDINFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGR 355
           P       V+   GL  ++A C    +   G    + +WG     +LGR
Sbjct: 571 PCL-----VTALQGLTVTMAACGDAYTVAVGAEGQVFTWGKGARGRLGR 614


>gi|330791573|ref|XP_003283867.1| hypothetical protein DICPUDRAFT_147589 [Dictyostelium purpureum]
 gi|325086253|gb|EGC39646.1| hypothetical protein DICPUDRAFT_147589 [Dictyostelium purpureum]
          Length = 454

 Score = 87.8 bits (216), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 89/346 (25%), Positives = 148/346 (42%), Gaps = 74/346 (21%)

Query: 14  VLTSRIFMRSASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPS-DVTSVSAG 72
           VLTS+ +  +     V+ FG+ + G +G     TG   +   PT V  L    V  V  G
Sbjct: 155 VLTSKHYYFNEG--KVLGFGENNFGQIG-----TGDIHNKTVPTLVENLDQFRVIDVDVG 207

Query: 73  HYHSLAVTNNGAVWAWGRNNEVQLGRGALE----------------------SRATWNDP 110
             HSL VT++G V+ WG N E Q+G+  +E                      +   ++ P
Sbjct: 208 LDHSLVVTSSGHVFGWGYNVEGQIGQKVVEYTRVQSSTDQLPGEDSLEGQMVADVEYSSP 267

Query: 111 KRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKD-ITEAIVPSRVEAL 169
             V GL++V +   F     S  +   G+++ +G ++ G LGLG D I   + P++V+  
Sbjct: 268 TLVPGLEKVKISKVFCGYDSSFLLSARGNVYAFGSNEVGSLGLGGDHIGRVVTPTKVKL- 326

Query: 170 AGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQE 229
             EKI ++S G  H L     G ++G G+ ++GR+G LG            D +S  ++ 
Sbjct: 327 -PEKIQQISSGSSHTLFLGNSGNVYGCGWGSEGRLG-LG------------DNTSNRNE- 371

Query: 230 ISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCG 289
                                  P++   F    + ++ ++ G  HSL L   G + S G
Sbjct: 372 -----------------------PVLLNYFKDNNIRIIKVSAGGSHSLALDDQGNVYSWG 408

Query: 290 SNVYGQLGREKQDMGMFPVDINFHP----VSISSGLGHSLAICEVR 331
           +   G+LG   +     P  IN+      + I SG+ +SL + + R
Sbjct: 409 NGSNGKLGHGDEKDCHLPTKINYFQNLFCLDIFSGIDNSLVLSKER 454



 Score = 81.6 bits (200), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 99/382 (25%), Positives = 165/382 (43%), Gaps = 65/382 (17%)

Query: 5   KSVVHNHVNVLTSRIF-MRSASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLP 63
           K+ + NH+  L  + +   +     + SFG      LGLP +      D   P ++  LP
Sbjct: 19  KNTIINHI--LNKKFYCTNNKEKNLLFSFGSFDNLKLGLPGN-----EDKLYPQQITHLP 71

Query: 64  S--DVTSVSAGHYHSLAVTN----------------NGAVWAWGRNNEVQLGRGALESRA 105
               +  +     +S  +T+                +  V+ WG N     G  AL S  
Sbjct: 72  PFLKIKQIGTSWLNSFLLTDESSTSTSLTTTTNKPVSNKVYMWGTNKS---GNMALPSDH 128

Query: 106 TWNDPKRVEGLDQVNVCAAFA----SGVVSSA--IGDDGSLWVWGKSKRGQLGLGKDITE 159
            +  P  V+ L + NV         S V++S     ++G +  +G++  GQ+G G DI  
Sbjct: 129 -YRFPTLVDILKEANVEKVVGGRSYSLVLTSKHYYFNEGKVLGFGENNFGQIGTG-DIHN 186

Query: 160 AIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSN 219
             VP+ VE L   +++ V  G  H+L  T  G +FGWGY+ +G+IG   K +E + + S+
Sbjct: 187 KTVPTLVENLDQFRVIDVDVGLDHSLVVTSSGHVFGWGYNVEGQIGQ--KVVEYTRVQSS 244

Query: 220 IDR--SSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSL 277
            D+    +S +    + +E +   +  G+EK               V++  + CG+D S 
Sbjct: 245 TDQLPGEDSLEGQMVADVEYSSPTLVPGLEK---------------VKISKVFCGYDSSF 289

Query: 278 VLGRNGVLLSCGSNVYGQLGREKQDMG--MFPVDINF--HPVSISSGLGHSLAICEVRSS 333
           +L   G + + GSN  G LG     +G  + P  +        ISSG  H+L +    S 
Sbjct: 290 LLSARGNVYAFGSNEVGSLGLGGDHIGRVVTPTKVKLPEKIQQISSGSSHTLFLG--NSG 347

Query: 334 NVTG---GARGIVSWGWNRSSQ 352
           NV G   G+ G +  G N S++
Sbjct: 348 NVYGCGWGSEGRLGLGDNTSNR 369


>gi|145334859|ref|NP_001078775.1| regulator of chromosome condensation repeat-containing protein
           [Arabidopsis thaliana]
 gi|62320260|dbj|BAD94537.1| UVB-resistance protein UVR8 - like [Arabidopsis thaliana]
 gi|332010007|gb|AED97390.1| regulator of chromosome condensation repeat-containing protein
           [Arabidopsis thaliana]
          Length = 276

 Score = 87.8 bits (216), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 57/172 (33%), Positives = 94/172 (54%), Gaps = 5/172 (2%)

Query: 50  GGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWND 109
           GG    P++V  L   V SVS G + ++A+T  G +W WG N+  +LGRG  ++   W +
Sbjct: 79  GGGLSVPSKVKALTVPVASVSCGGFFTMALTKEGQLWNWGANSNYELGRG--DNLGGW-E 135

Query: 110 PKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEAL 169
           P  V  L+ V +      G  S A+ ++G +  WG    GQLG    +    VP+ +EAL
Sbjct: 136 PMPVPSLEGVRITQIACGGYHSLALTEEGKVLSWGHGGHGQLG-SSSLRNQKVPTEIEAL 194

Query: 170 AGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLG-KALESSPLDSNI 220
           A +KIV ++ G   + A T+ G+L+ WG + D ++G  G   ++++P++ N 
Sbjct: 195 ADKKIVFIASGGSSSAAITDGGELWMWGNAKDFQLGVPGLPEIQTTPVEVNF 246



 Score = 62.0 bits (149), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 60/241 (24%), Positives = 110/241 (45%), Gaps = 33/241 (13%)

Query: 66  VTSVSAGHYHSLAVTNNGAVWAWGRNN----EVQLGRGALESRATWNDPKRVEGLDQVNV 121
           +++++    H+ A+T +G ++ WGR                     + P +V+ L  V V
Sbjct: 37  ISAIATSGTHTAAITESGELYMWGREEGDGRLGLGPGRGPNEGGGLSVPSKVKAL-TVPV 95

Query: 122 CAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGW 181
            +    G  + A+  +G LW WG +   +LG G ++     P  V +L G +I +++ G 
Sbjct: 96  ASVSCGGFFTMALTKEGQLWNWGANSNYELGRGDNLG-GWEPMPVPSLEGVRITQIACGG 154

Query: 182 GHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEI--------SSS 233
            H+LA TE+GK+  WG+   G++G+   +L +  + + I+  + +D++I        SS+
Sbjct: 155 YHSLALTEEGKVLSWGHGGHGQLGS--SSLRNQKVPTEIE--ALADKKIVFIASGGSSSA 210

Query: 234 TIEKAQKLVSEGMEKEKYMPIIWEP----------FLVEGVE-----VVDIACGFDHSLV 278
            I    +L   G  K+  + +   P          FL E  E     V+ I+ G  H+L 
Sbjct: 211 AITDGGELWMWGNAKDFQLGVPGLPEIQTTPVEVNFLTEEDECQPHKVISISIGASHALC 270

Query: 279 L 279
           L
Sbjct: 271 L 271



 Score = 55.5 bits (132), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 64/236 (27%), Positives = 92/236 (38%), Gaps = 63/236 (26%)

Query: 110 PKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEA------IVP 163
           P+RV+      + A   SG  ++AI + G L++WG+ +                    VP
Sbjct: 26  PRRVDDSWDCKISAIATSGTHTAAITESGELYMWGREEGDGRLGLGPGRGPNEGGGLSVP 85

Query: 164 SRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSAD---GRIGNLGKALESSPLDSNI 220
           S+V+AL    +  VS G    +A T++G+L+ WG +++   GR  NLG            
Sbjct: 86  SKVKALT-VPVASVSCGGFFTMALTKEGQLWNWGANSNYELGRGDNLGG----------- 133

Query: 221 DRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLV---EGVEVVDIACGFDHSL 277
                                              WEP  V   EGV +  IACG  HSL
Sbjct: 134 -----------------------------------WEPMPVPSLEGVRITQIACGGYHSL 158

Query: 278 VLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDI----NFHPVSISSGLGHSLAICE 329
            L   G +LS G   +GQLG         P +I    +   V I+SG   S AI +
Sbjct: 159 ALTEEGKVLSWGHGGHGQLGSSSLRNQKVPTEIEALADKKIVFIASGGSSSAAITD 214


>gi|383319135|ref|YP_005379976.1| Alpha-tubulin suppressor and related RCC1 domain-containing protein
           [Methanocella conradii HZ254]
 gi|379320505|gb|AFC99457.1| Alpha-tubulin suppressor and related RCC1 domain-containing protein
           [Methanocella conradii HZ254]
          Length = 413

 Score = 87.8 bits (216), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 59/166 (35%), Positives = 84/166 (50%), Gaps = 10/166 (6%)

Query: 44  TSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALES 103
           T  T +  +A  P  VP   S+VT++S+G + SLA+ ++G VWAWGRN + QLG G  E 
Sbjct: 191 TYATPITSNALTPVEVP--ISNVTAISSGIFFSLALKDDGTVWAWGRNVDGQLGDGTTED 248

Query: 104 RATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVP 163
                 P  V GL   ++ A       S A+  DGS+W WG S      +  D  E + P
Sbjct: 249 SLV---PVMVSGLR--DIVAISGGETASMALKKDGSVWAWGDSIGSFGNVDTDAKEYLTP 303

Query: 164 SRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGK 209
            +V       +  +SF   HALA  +D  L+ WG + +G +GN G 
Sbjct: 304 IQVSI---SNVTMISFSGLHALALKDDDTLWAWGQNGNGEVGNSGN 346



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 93/373 (24%), Positives = 176/373 (47%), Gaps = 63/373 (16%)

Query: 28  AVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWA 87
           +V ++G+   G +G+  +      D Y P +V    S+VT+VS G  H++A+  +G VW 
Sbjct: 26  SVWAWGNNHHGQVGVANAQ-----DVYTPEKVA--VSNVTAVSGGKLHAVALKCDGTVWE 78

Query: 88  WGRNNEVQLGRGALESRATWNDPKRV--EGLDQVNVCAAFASGVVSSAIGDDGSLWVWGK 145
           WG  N  +      +       P +V   G+ +V+   +F     + A+ D+G++W WG 
Sbjct: 79  WGHTNFYEDQSPGYDETLVTFPPVKVPLSGVRRVSAGDSF-----TLALCDNGTVWAWGS 133

Query: 146 SKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIG 205
           +  GQLG G + +  +V  RV+ L  E +  V  G+G+++A  EDG+++ WG    G   
Sbjct: 134 NYYGQLGDGTNKSSRLV--RVKGL--ENVKDVHAGYGYSMALDEDGRVWEWGRIYKGHEN 189

Query: 206 NLGKALESSPLDSNIDRSSE---SDQEISSSTIEKAQKL----------------VSEGM 246
           N      ++P+ SN     E   S+    SS I  +  L                + +G 
Sbjct: 190 N----TYATPITSNALTPVEVPISNVTAISSGIFFSLALKDDGTVWAWGRNVDGQLGDGT 245

Query: 247 EKEKYMPIIWEPFLVEGV-EVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGM 305
            ++  +P+     +V G+ ++V I+ G   S+ L ++G + + G ++ G  G    D   
Sbjct: 246 TEDSLVPV-----MVSGLRDIVAISGGETASMALKKDGSVWAWGDSI-GSFGNVDTDAKE 299

Query: 306 F--PVDINFHPVSISSGLG-HSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPDNV- 361
           +  P+ ++   V++ S  G H+LA+ +  +         + +WG N + ++G  G  ++ 
Sbjct: 300 YLTPIQVSISNVTMISFSGLHALALKDDDT---------LWAWGQNGNGEVGNSGNGSIV 350

Query: 362 --PLVVEGLEGES 372
             P++VE  E ++
Sbjct: 351 GYPVMVEIPENQN 363



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 73/280 (26%), Positives = 119/280 (42%), Gaps = 51/280 (18%)

Query: 76  SLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIG 135
           SLAV ++G+VWAWG N+  Q+G    +   T   P++V      NV A     + + A+ 
Sbjct: 18  SLAVMSDGSVWAWGNNHHGQVGVANAQDVYT---PEKVA---VSNVTAVSGGKLHAVALK 71

Query: 136 DDGSLWVWGKSKRGQ-LGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLF 194
            DG++W WG +   +    G D T    P     L+G +  +VS G    LA  ++G ++
Sbjct: 72  CDGTVWEWGHTNFYEDQSPGYDETLVTFPPVKVPLSGVR--RVSAGDSFTLALCDNGTVW 129

Query: 195 GWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKL------------- 241
            WG +  G++G               D +++S + +    +E  + +             
Sbjct: 130 AWGSNYYGQLG---------------DGTNKSSRLVRVKGLENVKDVHAGYGYSMALDED 174

Query: 242 --------VSEGMEKEKY-MPII---WEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCG 289
                   + +G E   Y  PI      P  V    V  I+ G   SL L  +G + + G
Sbjct: 175 GRVWEWGRIYKGHENNTYATPITSNALTPVEVPISNVTAISSGIFFSLALKDDGTVWAWG 234

Query: 290 SNVYGQLGREKQDMGMFPVDIN--FHPVSISSGLGHSLAI 327
            NV GQLG    +  + PV ++     V+IS G   S+A+
Sbjct: 235 RNVDGQLGDGTTEDSLVPVMVSGLRDIVAISGGETASMAL 274



 Score = 46.6 bits (109), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 52/205 (25%), Positives = 82/205 (40%), Gaps = 45/205 (21%)

Query: 126 ASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHAL 185
           A G  S A+  DGS+W WG +  GQ+G+  +  +   P +V   A   +  VS G  HA+
Sbjct: 13  AKGGFSLAVMSDGSVWAWGNNHHGQVGVA-NAQDVYTPEKV---AVSNVTAVSGGKLHAV 68

Query: 186 AQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEG 245
           A   DG ++ WG++      N  +           D+S   D+ +               
Sbjct: 69  ALKCDGTVWEWGHT------NFYE-----------DQSPGYDETL--------------- 96

Query: 246 MEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGM 305
                   + + P  V    V  ++ G   +L L  NG + + GSN YGQLG        
Sbjct: 97  --------VTFPPVKVPLSGVRRVSAGDSFTLALCDNGTVWAWGSNYYGQLGDGTNKSSR 148

Query: 306 FPVDINFHPV-SISSGLGHSLAICE 329
                    V  + +G G+S+A+ E
Sbjct: 149 LVRVKGLENVKDVHAGYGYSMALDE 173


>gi|196008365|ref|XP_002114048.1| hypothetical protein TRIADDRAFT_58118 [Trichoplax adhaerens]
 gi|190583067|gb|EDV23138.1| hypothetical protein TRIADDRAFT_58118 [Trichoplax adhaerens]
          Length = 429

 Score = 87.8 bits (216), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 101/401 (25%), Positives = 164/401 (40%), Gaps = 67/401 (16%)

Query: 17  SRIFMRSASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPS-DVTSVSAGHYH 75
           +R+ + S     V+  G G  G LGL   +     +   PT V  L   +   V+ G  H
Sbjct: 27  ARLSLASDEAGIVLVLGQGELGQLGLGEEIL----ERSRPTAVKKLLEVEFIQVACGGVH 82

Query: 76  SLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIG 135
           ++A+T  G ++ WG N+E  LGR   ++      P  V+GLD V +    A    ++A+ 
Sbjct: 83  TVALTKAGEIYTWGCNDECALGRDTSDTSEAEYLPGLVDGLDNVKIIQVSAGDNHTAALA 142

Query: 136 DDGSLWVWGK--SKRGQLGL---GKDITEAIVPSRVEALA--GEKIVKVSFGWGHALAQT 188
           DDG ++ WG     RG +GL   GK       P  +  L    + ++K+  G  H  A T
Sbjct: 143 DDGRVFCWGNFWDNRGSIGLNLAGKQ------PRPIVMLGDPNDPVIKIGSGNNHVAALT 196

Query: 189 EDGKLFGWGYSADGRIGNLGKALESSPLDSNIDR---------SSESDQEISSSTI---- 235
            +G +F WG    G++G + +   S      + R         +  S ++I  S I    
Sbjct: 197 ANGLIFTWGCGEQGQLGRVAERFCSRDTRQGLKRFLQPAVARVTQRSKKDIRFSDIFVGP 256

Query: 236 ------EKAQKLVSEGMEKEKYMPI----IWEPFLVEGVEVVD------------IACGF 273
                   A ++ + G+    Y  I    I   + +  ++ +             IA G 
Sbjct: 257 YNLFAVNAAGEVFACGL--NNYGQIGNGNITSLYYLAKIDSLSALNDGNDERQILIASGE 314

Query: 274 DHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFP-VDINFHPVSISSGLGHSL--AICEV 330
            H+L+L RNG + S G   YG+L       G+ P V    HP  I +     +    C +
Sbjct: 315 HHTLILARNGRVYSIGRGDYGRL-------GLGPDVKECSHPTEIETLANSDIKAVTCGL 367

Query: 331 RSSNVTGGARGIVSWGWNRSSQLGRMGPDNV--PLVVEGLE 369
             S     +  + SWG   + QLG    D++  P +V+  E
Sbjct: 368 AVSFAVSNSGDVYSWGMGTNLQLGSSTDDDILTPTLVKTKE 408



 Score = 43.9 bits (102), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 35/108 (32%), Positives = 52/108 (48%), Gaps = 8/108 (7%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLP-SDVTSVSAGHYHSLAVTNNGAVWA 87
           V S G G  G LGL   +     +   PT +  L  SD+ +V+ G   S AV+N+G V++
Sbjct: 326 VYSIGRGDYGRLGLGPDVK----ECSHPTEIETLANSDIKAVTCGLAVSFAVSNSGDVYS 381

Query: 88  WGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIG 135
           WG    +QLG    +   T   P  V+  +  N  AA A G  ++ +G
Sbjct: 382 WGMGTNLQLGSSTDDDILT---PTLVKTKESYNFFAASAGGQHTAILG 426



 Score = 43.5 bits (101), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 30/115 (26%), Positives = 52/115 (45%), Gaps = 3/115 (2%)

Query: 69  VSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASG 128
           +++G +H+L +  NG V++ GR +  +LG G      +   P  +E L   ++ A     
Sbjct: 310 IASGEHHTLILARNGRVYSIGRGDYGRLGLGPDVKECS--HPTEIETLANSDIKAVTCGL 367

Query: 129 VVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGH 183
            VS A+ + G ++ WG     QLG   D  + + P+ V+          S G  H
Sbjct: 368 AVSFAVSNSGDVYSWGMGTNLQLGSSTD-DDILTPTLVKTKESYNFFAASAGGQH 421


>gi|395541970|ref|XP_003772909.1| PREDICTED: LOW QUALITY PROTEIN: probable E3 ubiquitin-protein
           ligase HERC6 [Sarcophilus harrisii]
          Length = 1032

 Score = 87.8 bits (216), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 75/290 (25%), Positives = 123/290 (42%), Gaps = 52/290 (17%)

Query: 65  DVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAA 124
            +   + G  HSL +  +G VW+ G N+  QLGR  ++       P  ++ L+   V + 
Sbjct: 38  QIVQAACGERHSLLLLADGTVWSCGNNSYGQLGRKNIKKSKR---PAPIQALETQVVVSV 94

Query: 125 FASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHA 184
                 S AI   G ++ WG   RGQLG+ +   +  +P  + AL+ +KI++VS G  H+
Sbjct: 95  SCGKEHSLAICKTGRIYSWGSGSRGQLGIKEVKDQCSIPKNIAALSRDKIIQVSCGHYHS 154

Query: 185 LAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSE 244
           +A T+DGK+F WG +  G++G          L +N   S  S Q ++S            
Sbjct: 155 IALTQDGKVFSWGDNDHGQLG----------LGTNFP-SQASPQRVNS------------ 191

Query: 245 GMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMG 304
                           ++G+ +  +A G  HS  L  +G     G N  GQL    ++  
Sbjct: 192 ----------------LDGIPLAQVAAGGSHSFALSLSGTSYGWGRNKEGQLALSGKNAS 235

Query: 305 MFPVDINFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLG 354
           +         VSI+  + H       + SN     +G+     NRS Q+ 
Sbjct: 236 V---------VSINYCIWHEAEALTCKRSNSIKEFQGLKEL-LNRSRQIA 275



 Score = 85.1 bits (209), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 82/293 (27%), Positives = 133/293 (45%), Gaps = 35/293 (11%)

Query: 24  ASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVT-SVSAGHYHSLAVTNN 82
           A GT V S G+ S G LG           +  P  +  L + V  SVS G  HSLA+   
Sbjct: 54  ADGT-VWSCGNNSYGQLGRKNI-----KKSKRPAPIQALETQVVVSVSCGKEHSLAICKT 107

Query: 83  GAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWV 142
           G +++WG  +  QLG   ++ + +   PK +  L +  +         S A+  DG ++ 
Sbjct: 108 GRIYSWGSGSRGQLGIKEVKDQCSI--PKNIAALSRDKIIQVSCGHYHSIALTQDGKVFS 165

Query: 143 WGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADG 202
           WG +  GQLGLG +      P RV +L G  + +V+ G  H+ A +  G  +GWG + +G
Sbjct: 166 WGDNDHGQLGLGTNFPSQASPQRVNSLDGIPLAQVAAGGSHSFALSLSGTSYGWGRNKEG 225

Query: 203 RIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMP--------- 253
           ++   GK      ++  I   +E+     S++I++ Q L  E + + + +          
Sbjct: 226 QLALSGKNASVVSINYCIWHEAEALTCKRSNSIKEFQGL-KELLNRSRQIADGKVLTFGS 284

Query: 254 ---------IIWEPF---LVEGVEVV-DIACGFDHSLVLG-RNGVLLS--CGS 290
                    +I +P    +VE  E+   IACG  H+L     +G +LS  CGS
Sbjct: 285 NNSGQLGHGLITKPRGPQIVESAELFSQIACGSHHTLAYACTSGQVLSFGCGS 337



 Score = 61.6 bits (148), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 74/296 (25%), Positives = 129/296 (43%), Gaps = 87/296 (29%)

Query: 86  WAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFAS----GVVSSAIGD----- 136
           + WG N+  QLG  A   RA+   P+ V        C   AS     +V +A G+     
Sbjct: 3   YCWGDNSFRQLGINA-GRRAS---PRVVR-------CREGASLGGQQIVQAACGERHSLL 51

Query: 137 ---DGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKL 193
              DG++W  G +  GQLG  K+I ++  P+ ++AL  + +V VS G  H+LA  + G++
Sbjct: 52  LLADGTVWSCGNNSYGQLG-RKNIKKSKRPAPIQALETQVVVSVSCGKEHSLAICKTGRI 110

Query: 194 FGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMP 253
           + WG  + G++G + +  +   +  NI                         + ++K   
Sbjct: 111 YSWGSGSRGQLG-IKEVKDQCSIPKNI-----------------------AALSRDK--- 143

Query: 254 IIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGM-FPVDINF 312
                       ++ ++CG  HS+ L ++G + S G N +GQLG     +G  FP   + 
Sbjct: 144 ------------IIQVSCGHYHSIALTQDGKVFSWGDNDHGQLG-----LGTNFPSQASP 186

Query: 313 HPVS---------ISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPD 359
             V+         +++G  HS A+      +++G + G   WG N+  QL   G +
Sbjct: 187 QRVNSLDGIPLAQVAAGGSHSFAL------SLSGTSYG---WGRNKEGQLALSGKN 233



 Score = 48.9 bits (115), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 60/218 (27%), Positives = 93/218 (42%), Gaps = 44/218 (20%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRV---PGLPSDVTSVSAGHYHSLAVTNNGAV 85
           V S+GD   G LGL T+          P RV    G+P  +  V+AG  HS A++ +G  
Sbjct: 163 VFSWGDNDHGQLGLGTNFPSQAS----PQRVNSLDGIP--LAQVAAGGSHSFALSLSGTS 216

Query: 86  WAWGRNNEVQLGRG------------------ALESRATWNDPKRVEGLDQVNVCAAFAS 127
           + WGRN E QL                     AL  + + N  K  +GL ++        
Sbjct: 217 YGWGRNKEGQLALSGKNASVVSINYCIWHEAEALTCKRS-NSIKEFQGLKEL-------- 267

Query: 128 GVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQ 187
            +  S    DG +  +G +  GQLG G  IT+   P  VE  + E   +++ G  H LA 
Sbjct: 268 -LNRSRQIADGKVLTFGSNNSGQLGHGL-ITKPRGPQIVE--SAELFSQIACGSHHTLAY 323

Query: 188 -TEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSS 224
               G++  +G  +   + N   +L+   L+ N + S+
Sbjct: 324 ACTSGQVLSFGCGSQRHLTN---SLQQGSLEQNFNISN 358


>gi|380789959|gb|AFE66855.1| secretion-regulating guanine nucleotide exchange factor [Macaca
           mulatta]
          Length = 458

 Score = 87.8 bits (216), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 91/317 (28%), Positives = 136/317 (42%), Gaps = 51/317 (16%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAW 88
           V+S G  S G LG+P            P  +      V  ++AG  H+LA T +G V+ W
Sbjct: 122 VLSCGSNSFGQLGVPHGPR----RCVVPQAIELHKEKVVCIAAGLRHALAATASGIVFQW 177

Query: 89  GRNNEVQLGRGALESRA-----TWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVW 143
           G       GR     +      T  +P RV GL+        A    S+++ D G ++VW
Sbjct: 178 G-TGLASCGRRLCPGQTLPLFFTAKEPSRVTGLENSKAMCVLAGSDHSASLTDAGEVYVW 236

Query: 144 GKSKRGQLGLGKDITEAI---VPSRVEA--LAGEKIVKVSFGWGHALAQTEDGKLFGWGY 198
           G +K GQL      TEA    VP ++EA     EK+  V  GW H +AQTE GK+F WG 
Sbjct: 237 GSNKHGQLA-----TEAAFLPVPQKIEAHCFQNEKVTAVWSGWTHLVAQTETGKVFTWGR 291

Query: 199 SADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEP 258
           +  G++G   +  E   L+                +     +L++        MP     
Sbjct: 292 ADYGQLGRKLETYEGWKLEKQ-------------DSFLPCSRLLNN-------MPSSLHC 331

Query: 259 FLVEGVEVVDIACGFDHSL-VLGRNGVLLSCGSNVYGQL--GREKQDMGMFPVD--INFH 313
                    +++CG +H+L V+G  GV  S G N +G    G E       PV   ++  
Sbjct: 332 L----TGATEVSCGSEHNLAVIG--GVCYSWGWNEHGMCGDGTEANIWAPKPVQALLSSS 385

Query: 314 PVSISSGLGHSLAICEV 330
            + +  G GHSLA+C++
Sbjct: 386 GLLVGCGAGHSLALCQL 402



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 102/388 (26%), Positives = 158/388 (40%), Gaps = 56/388 (14%)

Query: 22  RSASGTAVV-SFGDGSQGALGLPTSLTGVGGDAYEPTRVPGL--PSDVTSVSAGHYHSLA 78
            +A  TAV+ ++G  S G LGL     G   D   P ++     P  V  ++ G  HS  
Sbjct: 9   EAAPATAVLFAWGANSYGQLGL-----GHKEDVLLPQQLNDFCKPRSVRRITGGGGHSAV 63

Query: 79  VTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDG 138
           VT+ G ++  G N + QLG G  E    +   K + G     V   +   ++   + ++G
Sbjct: 64  VTDIGDLFVCGLNKDGQLGLGHTEDIPYFTPCKSLFGCPIQQVACGWDFTII---LTENG 120

Query: 139 SLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGW-- 196
            +   G +  GQLG+       +VP  +E L  EK+V ++ G  HALA T  G +F W  
Sbjct: 121 QVLSCGSNSFGQLGVPHGPRRCVVPQAIE-LHKEKVVCIAAGLRHALAATASGIVFQWGT 179

Query: 197 GYSADGRIGNLGKALESSPLDSNIDRSS-----ESDQEIS-------SSTIEKAQKLVSE 244
           G ++ GR    G+ L   PL       S     E+ + +        S+++  A ++   
Sbjct: 180 GLASCGRRLCPGQTL---PLFFTAKEPSRVTGLENSKAMCVLAGSDHSASLTDAGEVYVW 236

Query: 245 GMEKE-------KYMPIIW--EPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQ 295
           G  K         ++P+    E    +  +V  +  G+ H +     G + + G   YGQ
Sbjct: 237 GSNKHGQLATEAAFLPVPQKIEAHCFQNEKVTAVWSGWTHLVAQTETGKVFTWGRADYGQ 296

Query: 296 LGR----------EKQDMGMFPVD--INFHPVSISSGLGHSLAIC-EVRSSNVTGGARGI 342
           LGR          EKQD    P    +N  P S+    G +   C    +  V GG    
Sbjct: 297 LGRKLETYEGWKLEKQD-SFLPCSRLLNNMPSSLHCLTGATEVSCGSEHNLAVIGGV--C 353

Query: 343 VSWGWNRSSQLGRMGPDNV--PLVVEGL 368
            SWGWN     G     N+  P  V+ L
Sbjct: 354 YSWGWNEHGMCGDGTEANIWAPKPVQAL 381



 Score = 55.5 bits (132), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 81/314 (25%), Positives = 130/314 (41%), Gaps = 56/314 (17%)

Query: 76  SLAVTNNGAVWAWGRNNEVQLGRGALES---RATWNDPKRVEGLDQVNVCAAFASGVVSS 132
           S A      ++AWG N+  QLG G  E        ND  +   + ++        G  S+
Sbjct: 8   SEAAPATAVLFAWGANSYGQLGLGHKEDVLLPQQLNDFCKPRSVRRIT-----GGGGHSA 62

Query: 133 AIGDDGSLWVWGKSKRGQLGLGKDITEAI-VPSRVEALAGEKIVKVSFGWGHALAQTEDG 191
            + D G L+V G +K GQLGLG   TE I   +  ++L G  I +V+ GW   +  TE+G
Sbjct: 63  VVTDIGDLFVCGLNKDGQLGLGH--TEDIPYFTPCKSLFGCPIQQVACGWDFTIILTENG 120

Query: 192 KLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQE---ISSSTIEKAQKLVSEGMEK 248
           ++   G ++ G++G     +   P    + ++ E  +E     ++ +  A    + G+  
Sbjct: 121 QVLSCGSNSFGQLG-----VPHGPRRCVVPQAIELHKEKVVCIAAGLRHALAATASGIVF 175

Query: 249 E---------------KYMPIIW---EPFLVEGVEVVDIAC---GFDHSLVLGRNGVLLS 287
           +               + +P+ +   EP  V G+E     C   G DHS  L   G +  
Sbjct: 176 QWGTGLASCGRRLCPGQTLPLFFTAKEPSRVTGLENSKAMCVLAGSDHSASLTDAGEVYV 235

Query: 288 CGSNVYGQLGREKQDMGMFPVDINFHP------VSISSGLGHSLAICEVRSSNVTGGARG 341
            GSN +GQL  E   + + P  I  H        ++ SG  H +A  E            
Sbjct: 236 WGSNKHGQLATEAAFLPV-PQKIEAHCFQNEKVTAVWSGWTHLVAQTETGK--------- 285

Query: 342 IVSWGWNRSSQLGR 355
           + +WG     QLGR
Sbjct: 286 VFTWGRADYGQLGR 299


>gi|209152366|gb|ACI33109.1| RCC2 homolog [Salmo salar]
          Length = 496

 Score = 87.8 bits (216), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 78/287 (27%), Positives = 123/287 (42%), Gaps = 23/287 (8%)

Query: 75  HSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAI 134
           HSL +T  G +W+WGRN + QLG G  +       PK +E L    V AA      + A+
Sbjct: 135 HSLLITTEGKLWSWGRNEKGQLGHGDTKRLEA---PKLIEALADEVVVAAACGRNHTLAL 191

Query: 135 GDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLF 194
            + G+ + +G++K GQLG G      + P+ ++   G+ +VKV+ G   ++     G L+
Sbjct: 192 TEGGTAYSFGENKLGQLGQGNQTDAVLSPALIQ-YNGQPLVKVACGAEFSMVVDCKGNLY 250

Query: 195 GWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPI 254
            +G    G++G+             I R+     E    TI +   +  E  +  +  P 
Sbjct: 251 SFGCPEYGQLGHNSDG-------KFIARAQRI--EFDCETIARRVAIFIEKSKDGQVTP- 300

Query: 255 IWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFHP 314
                 V  V V D+ACG +H+L+L     + S G   YG+LG  +Q   M P  +    
Sbjct: 301 ------VPNVVVRDVACGGNHTLILDSQKRVFSWGFGGYGRLGHTEQKDEMVPRLVKLFD 354

Query: 315 VSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPDNV 361
                G G S      + S       G+  WG   +S+   M P  V
Sbjct: 355 F---PGRGASQIYTGYQCSFAVNEMGGLFFWGVTNTSRESTMYPKAV 398


>gi|170062906|ref|XP_001866871.1| hect E3 ubiquitin ligase [Culex quinquefasciatus]
 gi|167880719|gb|EDS44102.1| hect E3 ubiquitin ligase [Culex quinquefasciatus]
          Length = 679

 Score = 87.8 bits (216), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 71/288 (24%), Positives = 122/288 (42%), Gaps = 53/288 (18%)

Query: 28  AVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVP-----GLPSDVTSVSAGHYHSLAVTNN 82
           A+  +G    G LGL       GG   E    P        ++V   + G  H+L +T +
Sbjct: 2   ALYCWGSTVHGELGL-------GGIEEEQVMTPREMDWSQAANVQQAACGGSHTLLLTKD 54

Query: 83  GAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWV 142
           G ++  G N+  QLG     +      P+ +  L+   V         S A+ + G L+ 
Sbjct: 55  GKLYTCGNNDHGQLGHDT--NNLPNKRPQFISALENYIVTQVSCGLSHSLALTNWGQLFS 112

Query: 143 WGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADG 202
           WG +  GQLG   D+     P  ++++A + +V++S G  H LA T  G+LF WG +  G
Sbjct: 113 WGSNATGQLGHDLDMVSYPAPRMIKSIATKTVVQISCGHSHCLALTNSGELFAWGANEYG 172

Query: 203 RIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVE 262
           ++G LG                 + +++ ++T+ K+                      + 
Sbjct: 173 QLG-LGT----------------TGKKVPTATLVKS----------------------LA 193

Query: 263 GVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDI 310
           G+ +  IACG +HS  + ++G +   G N +GQLG    D   +P  +
Sbjct: 194 GIPIAFIACGGNHSFAVSKSGAIFGWGKNTFGQLGLNDLDSRCYPTQL 241



 Score = 82.4 bits (202), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 73/271 (26%), Positives = 117/271 (43%), Gaps = 48/271 (17%)

Query: 66  VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAF 125
           VT VS G  HSLA+TN G +++WG N   QLG        ++  P+ ++ +    V    
Sbjct: 91  VTQVSCGLSHSLALTNWGQLFSWGSNATGQLGHDL--DMVSYPAPRMIKSIATKTVVQIS 148

Query: 126 ASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHAL 185
                  A+ + G L+ WG ++ GQLGLG    +    + V++LAG  I  ++ G  H+ 
Sbjct: 149 CGHSHCLALTNSGELFAWGANEYGQLGLGTTGKKVPTATLVKSLAGIPIAFIACGGNHSF 208

Query: 186 AQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEG 245
           A ++ G +FGWG +  G++G        + LDS    +             + + L S G
Sbjct: 209 AVSKSGAIFGWGKNTFGQLG-------LNDLDSRCYPT-------------QLKTLRSLG 248

Query: 246 MEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGM 305
           +                      I+CG D S+ L + G + +CG   +GQLG       +
Sbjct: 249 VRY--------------------ISCGDDFSVFLTQEGGVFTCGLGTFGQLGHGTHGNEI 288

Query: 306 FPVDINFHPV-----SISSGLGHSLAICEVR 331
            P  + F  +      I+ G  H+LA    R
Sbjct: 289 LPRMV-FELMGSKITQIACGRKHTLAFVPSR 318



 Score = 75.9 bits (185), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 75/276 (27%), Positives = 110/276 (39%), Gaps = 54/276 (19%)

Query: 84  AVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVW 143
           A++ WG     +LG G +E       P+ ++     NV  A   G  +  +  DG L+  
Sbjct: 2   ALYCWGSTVHGELGLGGIEEEQVMT-PREMDWSQAANVQQAACGGSHTLLLTKDGKLYTC 60

Query: 144 GKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGR 203
           G +  GQLG   +      P  + AL    + +VS G  H+LA T  G+LF WG +A G+
Sbjct: 61  GNNDHGQLGHDTNNLPNKRPQFISALENYIVTQVSCGLSHSLALTNWGQLFSWGSNATGQ 120

Query: 204 IGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEG 263
           +G+            ++D  S     +  S   K                          
Sbjct: 121 LGH------------DLDMVSYPAPRMIKSIATKT------------------------- 143

Query: 264 VEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGR----EKQDMGMFPVDINFHPVS-IS 318
             VV I+CG  H L L  +G L + G+N YGQLG     +K         +   P++ I+
Sbjct: 144 --VVQISCGHSHCLALTNSGELFAWGANEYGQLGLGTTGKKVPTATLVKSLAGIPIAFIA 201

Query: 319 SGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLG 354
            G  HS A+ +        GA  I  WG N   QLG
Sbjct: 202 CGGNHSFAVSK-------SGA--IFGWGKNTFGQLG 228



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 56/188 (29%), Positives = 89/188 (47%), Gaps = 11/188 (5%)

Query: 2   RLLKSVVHNHVNVLT---SRIFMRSASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTR 58
           R++KS+    V  ++   S     + SG  + ++G    G LGL T+   V   A     
Sbjct: 134 RMIKSIATKTVVQISCGHSHCLALTNSG-ELFAWGANEYGQLGLGTTGKKVP-TATLVKS 191

Query: 59  VPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQ 118
           + G+P  +  ++ G  HS AV+ +GA++ WG+N   QLG   L+SR     P +++ L  
Sbjct: 192 LAGIP--IAFIACGGNHSFAVSKSGAIFGWGKNTFGQLGLNDLDSRCY---PTQLKTLRS 246

Query: 119 VNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVS 178
           + V         S  +  +G ++  G    GQLG G    E I+P  V  L G KI +++
Sbjct: 247 LGVRYISCGDDFSVFLTQEGGVFTCGLGTFGQLGHGTHGNE-ILPRMVFELMGSKITQIA 305

Query: 179 FGWGHALA 186
            G  H LA
Sbjct: 306 CGRKHTLA 313



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 39/119 (32%), Positives = 60/119 (50%), Gaps = 21/119 (17%)

Query: 245 GMEKEKYMP---IIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQ 301
           G+E+E+ M    + W     +   V   ACG  H+L+L ++G L +CG+N +GQLG +  
Sbjct: 18  GIEEEQVMTPREMDWS----QAANVQQAACGGSHTLLLTKDGKLYTCGNNDHGQLGHDTN 73

Query: 302 DM-GMFPVDI----NFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGR 355
           ++    P  I    N+    +S GL HSLA+        T   + + SWG N + QLG 
Sbjct: 74  NLPNKRPQFISALENYIVTQVSCGLSHSLAL--------TNWGQ-LFSWGSNATGQLGH 123


>gi|156546048|ref|XP_001600404.1| PREDICTED: RCC1 and BTB domain-containing protein 1-like [Nasonia
           vitripennis]
          Length = 533

 Score = 87.8 bits (216), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 53/156 (33%), Positives = 90/156 (57%), Gaps = 5/156 (3%)

Query: 66  VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAF 125
           VT+++ G +HS+A+T +G V++WG+NN  Q+  G   ++     P++V       V  + 
Sbjct: 131 VTAIACGSHHSVALTEDGEVYSWGQNNCGQVSSGISSNQGA---PRKVNSALTGKVVVSI 187

Query: 126 ASGVVSS-AIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHA 184
           A G  SS A+ D G ++ WG +  GQLG+G  + + + P +V  L G  I KV+ G+ H 
Sbjct: 188 ACGQTSSMAVTDVGEVFGWGYNGVGQLGIGNYVNQ-LSPCKVTGLNGIVIEKVACGYAHT 246

Query: 185 LAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNI 220
           LA +++G L+ WG +  G++G   KA   +P+  N+
Sbjct: 247 LALSDEGALYVWGGNGFGQLGLGNKANACTPIKLNV 282



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 75/286 (26%), Positives = 120/286 (41%), Gaps = 52/286 (18%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSD-VTSVSAGH-YHSLAVTNNGAVW 86
           V + G  + G LG     TG       P +V  L    + + + G   H LA+TN G ++
Sbjct: 45  VYALGSNTAGCLG-----TGDSHSTLHPKKVEALCGKGIKTFAYGSGPHVLALTNKGEIY 99

Query: 87  AWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKS 146
           +WG N   +LG G+     T   P     L++  V A       S A+ +DG ++ WG++
Sbjct: 100 SWGHNGYCELGNGSTNQGLT---PTLCLNLNEKVVTAIACGSHHSVALTEDGEVYSWGQN 156

Query: 147 KRGQLGLGKDITEAIVPSRVE-ALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIG 205
             GQ+  G    +   P +V  AL G+ +V ++ G   ++A T+ G++FGWGY+  G++G
Sbjct: 157 NCGQVSSGISSNQG-APRKVNSALTGKVVVSIACGQTSSMAVTDVGEVFGWGYNGVGQLG 215

Query: 206 NLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVE 265
                 + SP                     K   L                     G+ 
Sbjct: 216 IGNYVNQLSPC--------------------KVTGL--------------------NGIV 235

Query: 266 VVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDIN 311
           +  +ACG+ H+L L   G L   G N +GQLG   +     P+ +N
Sbjct: 236 IEKVACGYAHTLALSDEGALYVWGGNGFGQLGLGNKANACTPIKLN 281



 Score = 47.4 bits (111), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 32/98 (32%), Positives = 54/98 (55%), Gaps = 7/98 (7%)

Query: 56  PTRVPGLPSDVT-SVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKR-- 112
           P +V GL   V   V+ G+ H+LA+++ GA++ WG N   QLG G   ++A    P +  
Sbjct: 225 PCKVTGLNGIVIEKVACGYAHTLALSDEGALYVWGGNGFGQLGLG---NKANACTPIKLN 281

Query: 113 VEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQ 150
           V  + +++  A      +S A+G  G +++WG+  RGQ
Sbjct: 282 VTEMGRISDIATLHYNHISVAMGQGGKIYMWGQC-RGQ 318


>gi|426367607|ref|XP_004050820.1| PREDICTED: secretion-regulating guanine nucleotide exchange factor
           [Gorilla gorilla gorilla]
          Length = 458

 Score = 87.8 bits (216), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 91/323 (28%), Positives = 136/323 (42%), Gaps = 63/323 (19%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAW 88
           V+S G  S G LG+P            P  +      V  ++AG  H++A T +G V+ W
Sbjct: 122 VLSCGSNSFGQLGVPHGPR----RCVVPQAIELHKEKVVCIAAGLRHAVAATASGIVFQW 177

Query: 89  GRNNEVQLGRGALESRA-----TWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVW 143
           G       GR     +      T  +P RV GL+        A    S+++ D G ++VW
Sbjct: 178 G-TGLASCGRRLCPGQTLPLFFTAKEPSRVTGLENSKAMCVLAGSDHSASLTDAGEVYVW 236

Query: 144 GKSKRGQLGLGKDITEAIVPSRVEA--LAGEKIVKVSFGWGHALAQTEDGKLFGWGYSAD 201
           G +K GQL    +     VP ++EA     EK+  +  GW H +AQTE GK+F WG  AD
Sbjct: 237 GSNKHGQLA--NEAAFLPVPQKIEAHCFQNEKVTAIWSGWTHLVAQTETGKMFTWG-RAD 293

Query: 202 GRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEK---YMPIIWEP 258
              G LG+ LE+                              EG + EK   ++P    P
Sbjct: 294 --YGQLGRKLET-----------------------------YEGWKLEKQDSFLPCSRPP 322

Query: 259 -------FLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQL--GREKQDMGMFPVD 309
                    + G    +++CG +H+L +   GV  S G N +G    G E       PV 
Sbjct: 323 NSMPSSLHCITG--ATEVSCGSEHNLAI-IGGVCYSWGWNEHGMCGDGTEANVWAPKPVQ 379

Query: 310 --INFHPVSISSGLGHSLAICEV 330
             ++   + +  G GHSLA+C++
Sbjct: 380 ALLSSSGLLVGCGAGHSLALCQL 402



 Score = 65.9 bits (159), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 89/344 (25%), Positives = 138/344 (40%), Gaps = 48/344 (13%)

Query: 63  PSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVC 122
           P  V  ++ G  HS  VT+ G ++  G N + QLG G  E    +   K + G     V 
Sbjct: 48  PRSVRRITGGGGHSAVVTDGGDLFVCGLNKDGQLGLGHTEDIPYFTPCKSLFGCPIQQVA 107

Query: 123 AAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWG 182
             +   ++   + ++G +   G +  GQLG+       +VP  +E L  EK+V ++ G  
Sbjct: 108 CGWDFTIM---LTENGQVLSCGSNSFGQLGVPHGPRRCVVPQAIE-LHKEKVVCIAAGLR 163

Query: 183 HALAQTEDGKLFGW--GYSADGRIGNLGKALESSPLDSNIDRSS-----ESDQEIS---- 231
           HA+A T  G +F W  G ++ GR    G+ L   PL       S     E+ + +     
Sbjct: 164 HAVAATASGIVFQWGTGLASCGRRLCPGQTL---PLFFTAKEPSRVTGLENSKAMCVLAG 220

Query: 232 ---SSTIEKAQKLVSEGMEKE-------KYMPIIW--EPFLVEGVEVVDIACGFDHSLVL 279
              S+++  A ++   G  K         ++P+    E    +  +V  I  G+ H +  
Sbjct: 221 SDHSASLTDAGEVYVWGSNKHGQLANEAAFLPVPQKIEAHCFQNEKVTAIWSGWTHLVAQ 280

Query: 280 GRNGVLLSCGSNVYGQLGR----------EKQDMGMFPVD--INFHPVSISSGLGHSLAI 327
              G + + G   YGQLGR          EKQD    P     N  P S+    G +   
Sbjct: 281 TETGKMFTWGRADYGQLGRKLETYEGWKLEKQD-SFLPCSRPPNSMPSSLHCITGATEVS 339

Query: 328 C-EVRSSNVTGGARGIVSWGWNRSSQLGRMGPDNV--PLVVEGL 368
           C    +  + GG     SWGWN     G     NV  P  V+ L
Sbjct: 340 CGSEHNLAIIGGV--CYSWGWNEHGMCGDGTEANVWAPKPVQAL 381



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 63/228 (27%), Positives = 97/228 (42%), Gaps = 58/228 (25%)

Query: 149 GQLGLGKDITEAIVPSRVEALAGEKIVK-VSFGWGHALAQTEDGKLFGWGYSADGRIGNL 207
           GQLGLG    + ++P ++      + V+ ++ G GH+   T+ G LF  G + DG++G L
Sbjct: 26  GQLGLGHK-EDVLLPQQLNDFCKPRSVRRITGGGGHSAVVTDGGDLFVCGLNKDGQLG-L 83

Query: 208 GKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVV 267
           G                   ++I   T  K+                      + G  + 
Sbjct: 84  GHT-----------------EDIPYFTPCKS----------------------LFGCPIQ 104

Query: 268 DIACGFDHSLVLGRNGVLLSCGSNVYGQLG-REKQDMGMFPVDINFHP---VSISSGLGH 323
            +ACG+D +++L  NG +LSCGSN +GQLG        + P  I  H    V I++GL H
Sbjct: 105 QVACGWDFTIMLTENGQVLSCGSNSFGQLGVPHGPRRCVVPQAIELHKEKVVCIAAGLRH 164

Query: 324 SLAICEVRSSNVTGGARGIV-SWGWNRSSQLGRMGP-DNVPLVVEGLE 369
           ++A            A GIV  WG   +S   R+ P   +PL     E
Sbjct: 165 AVA----------ATASGIVFQWGTGLASCGRRLCPGQTLPLFFTAKE 202


>gi|440798701|gb|ELR19768.1| regulator of chromosome condensation (RCC1) repeat domain
           containing protein [Acanthamoeba castellanii str. Neff]
          Length = 351

 Score = 87.8 bits (216), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 55/154 (35%), Positives = 88/154 (57%), Gaps = 5/154 (3%)

Query: 56  PTRVPGLPS-DVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVE 114
           PTR+       V SV+AG +HS+ +T  G V+A G + E +LG+G  +  A+ ++P+RV 
Sbjct: 46  PTRIKAFQGIRVVSVAAGWHHSVFLTACGEVFACGNSKEGKLGQGEDKPDASLHEPRRVV 105

Query: 115 GLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKI 174
           GL+ V      A    +  +   G+L+ +G  + G+LGLG D  +  V + +  L GE++
Sbjct: 106 GLEDVTAIRVVAGAFHTLVLTSTGTLYSFGYGRNGRLGLG-DANDRSVATLITGLCGEEV 164

Query: 175 VKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLG 208
           V++S G  H+LA T+ G+ + WG   DG  G LG
Sbjct: 165 VQMSGGNMHSLAVTKTGRAYAWG---DGSYGILG 195



 Score = 45.1 bits (105), Expect = 0.060,   Method: Compositional matrix adjust.
 Identities = 56/180 (31%), Positives = 76/180 (42%), Gaps = 29/180 (16%)

Query: 11  HVNVLTSRIFMRSASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLP-SDVTSV 69
           H  VLTS       +GT + SFG G  G LGL     G   D    T + GL   +V  +
Sbjct: 121 HTLVLTS-------TGT-LYSFGYGRNGRLGL-----GDANDRSVATLITGLCGEEVVQM 167

Query: 70  SAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEG-LDQVNVCAAFASG 128
           S G+ HSLAVT  G  +AWG  +   LG  A+    T   P  + G  +   V AA A  
Sbjct: 168 SGGNMHSLAVTKTGRAYAWGDGSYGILGLPAVNEDVT--TPMLIGGAFEAKRVVAASAGD 225

Query: 129 VVSSAIGDDGSLWVWGKSK-----------RGQLGLGKDITEAIVPSRVEALAGEKIVKV 177
             +  + DDG ++  G+              G+LG          P  + ALA +K+  V
Sbjct: 226 FHNLFLTDDGQVFSCGRDSATLNTLQTRDGNGRLGYAVTADAQCEPKLIPALA-DKVATV 284


>gi|167518173|ref|XP_001743427.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163778526|gb|EDQ92141.1| predicted protein [Monosiga brevicollis MX1]
          Length = 1024

 Score = 87.8 bits (216), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 87/323 (26%), Positives = 147/323 (45%), Gaps = 33/323 (10%)

Query: 58  RVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLD 117
           R   +PS + + +AG YHSL VT +G V++ G+N+  QLGR            KR+E ++
Sbjct: 26  RSLAVPSGLRAAAAGAYHSLLVTTDGLVYSAGKNDHRQLGRS-----GPAGIFKRIEAIE 80

Query: 118 QVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEA--IVPSRVEALAGEKIV 175
             ++    A    S  + D G ++  G  +RGQLG G+  +E    VP  + +L    IV
Sbjct: 81  VASIRQVAAGEDFSLMLDDRGKVYAVGAGERGQLGCGRQTSEEGHRVPKIIRSLHDVPIV 140

Query: 176 KVSFGWGHALAQTEDGKLFGWGYSADGRIGN--LGKALESSPLDSNIDRSSE--SDQEIS 231
            +S G  HALA +    +F WG +A+G++GN     + + +P+     R     +     
Sbjct: 141 ALSVGGRHALALSASSIVFAWGENANGQLGNGHFVPSYQPTPIPELNGRGVVGLAAGRQH 200

Query: 232 SSTIEKAQKLVSEGME----------KEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGR 281
           S  +  A +L + G            K +  P +    L +G  +V ++ G  HSL    
Sbjct: 201 SLALTAASELYAFGANEHGQLGVGDTKPRLRPELVRAALRKG--LVKVSAGDFHSLARSA 258

Query: 282 NGVLLSCGSNVYGQLGR-EKQDMGMFPVDINF-----HPVSISSGLGHSLAIC----EVR 331
            G   + G N +GQ G  +  D  + P +I+      H   I++G  HS+ +     +  
Sbjct: 259 TGHAFAWGGNQWGQCGVGDDADAILLPREIDSVQEHGHIADIATGKRHSVLLVVTSNQTT 318

Query: 332 SSNVTGGARGIVSWGWNRSSQLG 354
            +  T   + + ++G N  +QLG
Sbjct: 319 PTPSTFHKQLLFTFGANSLAQLG 341



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 62/219 (28%), Positives = 99/219 (45%), Gaps = 10/219 (4%)

Query: 66  VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAF 125
           + ++S G  H+LA++ +  V+AWG N   QLG G          P  +  L+   V    
Sbjct: 139 IVALSVGGRHALALSASSIVFAWGENANGQLGNGHF---VPSYQPTPIPELNGRGVVGLA 195

Query: 126 ASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHAL 185
           A    S A+     L+ +G ++ GQLG+G D    + P  V A   + +VKVS G  H+L
Sbjct: 196 AGRQHSLALTAASELYAFGANEHGQLGVG-DTKPRLRPELVRAALRKGLVKVSAGDFHSL 254

Query: 186 AQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEG 245
           A++  G  F WG +  G+ G +G   ++  L   ID   E       +T ++   L+   
Sbjct: 255 ARSATGHAFAWGGNQWGQCG-VGDDADAILLPREIDSVQEHGHIADIATGKRHSVLLVVT 313

Query: 246 MEKEKYMPIIWEPFLV-----EGVEVVDIACGFDHSLVL 279
             +    P  +   L+       +  + +A G DHSLVL
Sbjct: 314 SNQTTPTPSTFHKQLLFTFGANSLAQLGVAAGGDHSLVL 352


>gi|297583255|ref|YP_003699035.1| Ig domain-containing protein group 2 domain-containing protein
           [Bacillus selenitireducens MLS10]
 gi|297141712|gb|ADH98469.1| Ig domain protein group 2 domain protein [Bacillus selenitireducens
           MLS10]
          Length = 790

 Score = 87.8 bits (216), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 77/266 (28%), Positives = 126/266 (47%), Gaps = 50/266 (18%)

Query: 68  SVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFAS 127
           SVSAG +HSL +  +G V ++G NN+ QLG     + A+ ++P  +  L   ++ A  A 
Sbjct: 88  SVSAGAHHSLVLMKDGTVVSFGANNQEQLG--LYSNAASVSNPTVISEL--TDIIAVSAG 143

Query: 128 GVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQ 187
              S A+   G++W WG +  G+ G G        P R+  L   +IV+VS G+ HA+A 
Sbjct: 144 SDFSLALDGSGNVWSWGSNAFGKGGHGSVGGTIATPERITDLEEPRIVQVSAGFEHAMAL 203

Query: 188 TEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGME 247
            ++G ++ WG    G+ G  G+ +E++P                                
Sbjct: 204 DDEGNVYSWGSGRYGKAGT-GQTVENNP-------------------------------- 230

Query: 248 KEKYMPIIWEPFLVEGV-EVVDIACGFDHSLVLGRN-GVLLSCGSNVYGQLGREKQDMGM 305
                     P ++ G+ E+V ++ G +HSLVL RN G +L  G N YGQ+G+  ++  +
Sbjct: 231 ---------NPEVISGIPEIVSVSAGENHSLVLTRNTGAVLGFGRNDYGQIGQSGRNDHV 281

Query: 306 FPVDIN--FHPVSISSGLGHSLAICE 329
            PV I+       I +G   S+A+ E
Sbjct: 282 EPVVISGLTDVTVIEAGADLSVAVTE 307



 Score = 54.3 bits (129), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 76/314 (24%), Positives = 126/314 (40%), Gaps = 72/314 (22%)

Query: 68  SVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFAS 127
           SVS    H+L +  +G+VW +G +      RG L  R   + P R+    Q N    F  
Sbjct: 35  SVSTSDNHTLILKRDGSVWGFGSST-----RGQLGERPPGSTPGRIH---QSN--GGFLD 84

Query: 128 GVVSSAIG--------DDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSF 179
           G VS + G         DG++  +G + + QLGL  +      P+ +  L    I+ VS 
Sbjct: 85  GAVSVSAGAHHSLVLMKDGTVVSFGANNQEQLGLYSNAASVSNPTVISELT--DIIAVSA 142

Query: 180 GWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQ 239
           G   +LA    G ++ WG +A                        +        TI   +
Sbjct: 143 GSDFSLALDGSGNVWSWGSNA----------------------FGKGGHGSVGGTIATPE 180

Query: 240 KLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGR- 298
           ++                   +E   +V ++ GF+H++ L   G + S GS  YG+ G  
Sbjct: 181 RITD-----------------LEEPRIVQVSAGFEHAMALDDEGNVYSWGSGRYGKAGTG 223

Query: 299 EKQDMGMFPVDINFHP--VSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRM 356
           +  +    P  I+  P  VS+S+G  HSL +        T     ++ +G N   Q+G+ 
Sbjct: 224 QTVENNPNPEVISGIPEIVSVSAGENHSLVL--------TRNTGAVLGFGRNDYGQIGQS 275

Query: 357 GPDN--VPLVVEGL 368
           G ++   P+V+ GL
Sbjct: 276 GRNDHVEPVVISGL 289


>gi|323455096|gb|EGB10965.1| hypothetical protein AURANDRAFT_62296 [Aureococcus anophagefferens]
          Length = 1603

 Score = 87.8 bits (216), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 82/275 (29%), Positives = 125/275 (45%), Gaps = 57/275 (20%)

Query: 66  VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESR--ATWNDPKRVEGLDQVNVCA 123
           V  ++AG  HS+    +G V+A G N+E QLG G L  R   T  +  R E +D+  +  
Sbjct: 467 VLDMAAGGSHSVLACYDGNVYACGANDEGQLGVGDLVPRKLPTLVEFPRDEDVDEGPLYQ 526

Query: 124 A--------FASGVV----------SSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSR 165
           +        F   VV          S+AI  +G+ +VWG++  G+LGLG+D+  A  P+R
Sbjct: 527 SIAKHHDRLFTERVVVVAVACGWRHSAAISTNGACFVWGENSNGKLGLGRDVPRAERPTR 586

Query: 166 VE--ALAGEKIVKVSFGWGHALA---QTEDGKLFG---WGYSADGRIGNLGKALESSPLD 217
           V    L G  ++ V+ G  H L      +D + FG   WG+  +G +G         P  
Sbjct: 587 VLGGVLDGVLVLHVACGTEHTLCGGVDHDDSRSFGLYAWGHRINGALG--------VPTT 638

Query: 218 SNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLV---EGVEVVDIACGFD 274
              D ++ ++    S  +                   ++EP LV    GV V  +ACG  
Sbjct: 639 FRTDGATRTEAHDMSDLVP------------------LYEPVLVPGSRGVPVRQLACGTF 680

Query: 275 HSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVD 309
           HS  +  +G LL+CG    GQLGR+ + +   PVD
Sbjct: 681 HSAFVDGDGRLLTCGLGDSGQLGRDLRRVAADPVD 715



 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/125 (30%), Positives = 65/125 (52%), Gaps = 7/125 (5%)

Query: 69  VSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASG 128
           V+ G  H++ ++++  V+++G+ +  QLG   LE RA    P R++ L    V    A  
Sbjct: 751 VACGGNHTVLLSSSHEVFSFGKGSSGQLGTAELEHRAA---PARLDALLDKGVIGIAAGA 807

Query: 129 VVSSAIGDDGSLWVWGKSKRGQLGLGKDITEA----IVPSRVEALAGEKIVKVSFGWGHA 184
             S+A  + G  +VWG++  GQLG  K+   +     +P+ V  L+  +   ++FG  H 
Sbjct: 808 SFSAAWTESGHTYVWGEATAGQLGHAKEHHTSSNVMPLPNLVPILSYARCRSLAFGGSHT 867

Query: 185 LAQTE 189
           LA TE
Sbjct: 868 LALTE 872



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 69/274 (25%), Positives = 112/274 (40%), Gaps = 50/274 (18%)

Query: 66  VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEG--LDQVNVCA 123
           V +V+ G  HS A++ NGA + WG N+  +LG G    RA    P RV G  LD V V  
Sbjct: 542 VVAVACGWRHSAAISTNGACFVWGENSNGKLGLGRDVPRA--ERPTRVLGGVLDGVLVLH 599

Query: 124 AFASGVVSSAIG----DDGS---LWVWGKSKRGQLGL-------GKDITEA-----IVPS 164
             A G   +  G    DD     L+ WG    G LG+       G   TEA     +VP 
Sbjct: 600 -VACGTEHTLCGGVDHDDSRSFGLYAWGHRINGALGVPTTFRTDGATRTEAHDMSDLVPL 658

Query: 165 RVEALA----GEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNI 220
               L     G  + +++ G  H+     DG+L   G    G++G   + + + P+D   
Sbjct: 659 YEPVLVPGSRGVPVRQLACGTFHSAFVDGDGRLLTCGLGDSGQLGRDLRRVAADPVDGTP 718

Query: 221 DRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEG---VEVVDIACGFDHSL 277
           +R+    +  +                   + P++       G   +  + +ACG +H++
Sbjct: 719 NRARADARAFT-------------------FGPVLLPRRSRLGAARLRCLRVACGGNHTV 759

Query: 278 VLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDIN 311
           +L  +  + S G    GQLG  + +    P  ++
Sbjct: 760 LLSSSHEVFSFGKGSSGQLGTAELEHRAAPARLD 793



 Score = 47.0 bits (110), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 53/222 (23%), Positives = 90/222 (40%), Gaps = 39/222 (17%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDA------------YEPTRVPG---LPSDVTSVSAGH 73
           + ++G    GALG+PT+    G               YEP  VPG   +P  V  ++ G 
Sbjct: 622 LYAWGHRINGALGVPTTFRTDGATRTEAHDMSDLVPLYEPVLVPGSRGVP--VRQLACGT 679

Query: 74  YHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWND--------------------PKRV 113
           +HS  V  +G +   G  +  QLGR      A   D                    P+R 
Sbjct: 680 FHSAFVDGDGRLLTCGLGDSGQLGRDLRRVAADPVDGTPNRARADARAFTFGPVLLPRRS 739

Query: 114 E-GLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGE 172
             G  ++        G  +  +     ++ +GK   GQLG   ++     P+R++AL  +
Sbjct: 740 RLGAARLRCLRVACGGNHTVLLSSSHEVFSFGKGSSGQLGTA-ELEHRAAPARLDALLDK 798

Query: 173 KIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESS 214
            ++ ++ G   + A TE G  + WG +  G++G+  +   SS
Sbjct: 799 GVIGIAAGASFSAAWTESGHTYVWGEATAGQLGHAKEHHTSS 840



 Score = 39.7 bits (91), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 30/127 (23%), Positives = 50/127 (39%), Gaps = 17/127 (13%)

Query: 171 GEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEI 230
           G K++ ++ G  H++    DG ++  G + +G++G         P      R  + D+  
Sbjct: 464 GHKVLDMAAGGSHSVLACYDGNVYACGANDEGQLGVGDLVPRKLPTLVEFPRDEDVDEGP 523

Query: 231 SSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGS 290
              +I K                   +    E V VV +ACG+ HS  +  NG     G 
Sbjct: 524 LYQSIAKHH-----------------DRLFTERVVVVAVACGWRHSAAISTNGACFVWGE 566

Query: 291 NVYGQLG 297
           N  G+LG
Sbjct: 567 NSNGKLG 573


>gi|118398943|ref|XP_001031798.1| regulator of chromosome condensation (RCC1) [Tetrahymena
           thermophila]
 gi|89286132|gb|EAR84135.1| regulator of chromosome condensation (RCC1) [Tetrahymena
           thermophila SB210]
          Length = 443

 Score = 87.8 bits (216), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 81/278 (29%), Positives = 127/278 (45%), Gaps = 45/278 (16%)

Query: 85  VWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWG 144
           V++WG     QLG   L++   +  P  +E L    +    A   +S A+  +G ++ WG
Sbjct: 51  VYSWGYGGFGQLG---LQNENNYYTPTEIEVLTDKKIKKVEAGKSISMALTHNGEVYSWG 107

Query: 145 KSKRGQLG----LGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSA 200
           K+K G LG    L  ++T+   P R+E L G+KI ++S G  H  A TEDG+++ WG   
Sbjct: 108 KNKGGILGHEDRLSFNMTQ---PERIEKLLGKKIKQISCGQFHMAAVTEDGEVYTWGNKE 164

Query: 201 DGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFL 260
            G++G+  +  +   +   I R + S   +  S +   QK+ S G  K K          
Sbjct: 165 FGKLGHEEELKQEQKI--KIKRGNLSHDYLQDSML--PQKIESLGNIKAK---------- 210

Query: 261 VEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGR-EKQDMGMFPV---DINFHPVS 316
                   +ACG   ++VL  +G + + G N YG LG    Q+    P    D+N   V 
Sbjct: 211 -------QVACGIQFTVVLSEDGKVYTFGYNQYGSLGYVSDQNSVTTPQLIKDLN-DIVK 262

Query: 317 ISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLG 354
           IS+G     AI +            + +WG NR+ QLG
Sbjct: 263 ISAGYSFCAAITKQGK---------LYTWGNNRNGQLG 291



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 94/364 (25%), Positives = 161/364 (44%), Gaps = 48/364 (13%)

Query: 27  TAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLP-SDVTSVSAGHYHSLAVTNNGAV 85
           T V S+G G  G LGL         + Y PT +  L    +  V AG   S+A+T+NG V
Sbjct: 49  TIVYSWGYGGFGQLGLQNE-----NNYYTPTEIEVLTDKKIKKVEAGKSISMALTHNGEV 103

Query: 86  WAWGRNNEVQLGRGALESRATWN--DPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVW 143
           ++WG+N    LG    E R ++N   P+R+E L    +          +A+ +DG ++ W
Sbjct: 104 YSWGKNKGGILGH---EDRLSFNMTQPERIEKLLGKKIKQISCGQFHMAAVTEDGEVYTW 160

Query: 144 GKSKRGQLG-----------------LGKD-ITEAIVPSRVEALAGEKIVKVSFGWGHAL 185
           G  + G+LG                 L  D + ++++P ++E+L   K  +V+ G    +
Sbjct: 161 GNKEFGKLGHEEELKQEQKIKIKRGNLSHDYLQDSMLPQKIESLGNIKAKQVACGIQFTV 220

Query: 186 AQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISS-----STIEKAQK 240
             +EDGK++ +GY+  G +G +    ++S     + +      +IS+     + I K  K
Sbjct: 221 VLSEDGKVYTFGYNQYGSLGYVSD--QNSVTTPQLIKDLNDIVKISAGYSFCAAITKQGK 278

Query: 241 LVSEGMEKEKYM-----PIIWEPFLVEGV----EVVDIACGFDHSLVLGRNGVLLSCGSN 291
           L + G  +   +         +P +V G      +VD++CG +    L + G L + G  
Sbjct: 279 LYTWGNNRNGQLGNSQSLYQTKPSIVTGFGSQNSIVDVSCGDNFIAALTQQGQLYTWGFG 338

Query: 292 VYGQLGREKQDMGMFPVDINFHP--VSISSGLGHSLAICEVRSSNVTG-GARGIVSWGWN 348
             GQLG   +     P  + F    + I+ G  H+  I E       G G+ G +  G N
Sbjct: 339 GDGQLGHGNKSDLYAPRHVEFKQKIIKIACGGSHAAFITEDNQLYQFGRGSEGQLGIGQN 398

Query: 349 RSSQ 352
            +S+
Sbjct: 399 VASE 402



 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 67/253 (26%), Positives = 112/253 (44%), Gaps = 49/253 (19%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAW 88
           V +FG    G+LG  +    V      P  +  L +D+  +SAG+    A+T  G ++ W
Sbjct: 228 VYTFGYNQYGSLGYVSDQNSVT----TPQLIKDL-NDIVKISAGYSFCAAITKQGKLYTW 282

Query: 89  GRNNEVQLGRGALESRATWN-DPKRVEGLDQVNVCAAFASG-VVSSAIGDDGSLWVWGKS 146
           G N   QLG     S++ +   P  V G    N     + G    +A+   G L+ WG  
Sbjct: 283 GNNRNGQLGN----SQSLYQTKPSIVTGFGSQNSIVDVSCGDNFIAALTQQGQLYTWGFG 338

Query: 147 KRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGN 206
             GQLG G + ++   P  VE    +KI+K++ G  HA   TED +L+ +G  ++G++G 
Sbjct: 339 GDGQLGHG-NKSDLYAPRHVEF--KQKIIKIACGGSHAAFITEDNQLYQFGRGSEGQLG- 394

Query: 207 LGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEV 266
                        I ++  S+  I S+                   P + + F  +G +V
Sbjct: 395 -------------IGQNVASEASIRST-------------------PNLVQYF--KGKQV 420

Query: 267 VDIACGFDHSLVL 279
           VD+ CG +H++ +
Sbjct: 421 VDVTCGGEHTIAI 433


>gi|357393793|ref|YP_004908634.1| hypothetical protein KSE_69190 [Kitasatospora setae KM-6054]
 gi|311900270|dbj|BAJ32678.1| hypothetical protein KSE_69190 [Kitasatospora setae KM-6054]
          Length = 430

 Score = 87.8 bits (216), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 92/305 (30%), Positives = 135/305 (44%), Gaps = 72/305 (23%)

Query: 64  SDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCA 123
           S    V+AG +HSLA+ ++  V AWGRNN  QLG G     +    P RVEGL++V    
Sbjct: 149 SSARDVAAGGWHSLALLDDQTVVAWGRNNYGQLGNGTNSDSSV---PVRVEGLNKV---I 202

Query: 124 AFASGVVSS-AIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWG 182
           A A+G+  S A+ +DG++W WG +  GQLG G   +   VP+ V  L G  + K++ G  
Sbjct: 203 AIAAGLNHSIALREDGTVWAWGYNINGQLGDGTSASRN-VPAPVGGLTG--VTKIAAGCN 259

Query: 183 HALA----------QTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISS 232
           H LA           T    +  WGY+A G++G+          +S I+R          
Sbjct: 260 HNLALVGPPSGGVKPTSGNAVKAWGYNATGQLGD----------NSTINR---------- 299

Query: 233 STIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSL-VLGRNGVLLSCGSN 291
                             Y P+  +   + GV    IA G +HSL V   +  L + G N
Sbjct: 300 ------------------YTPVDTQGIWLGGVS--QIAAGCNHSLAVTDSDNKLKAWGQN 339

Query: 292 VYGQLGREKQDMGMFPVDI-NFHPVS-ISSGLGHSLAICEVRSSNVTGGARGIVSWGWNR 349
             GQ+G    D  + PV +     +  ++ G  H++ +          G   + SWG N 
Sbjct: 340 TSGQVGDGTTDYRITPVPVPGLKGIQLVAGGREHTIVLL---------GDNTVRSWGANG 390

Query: 350 SSQLG 354
           S QLG
Sbjct: 391 SGQLG 395



 Score = 71.2 bits (173), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 84/291 (28%), Positives = 123/291 (42%), Gaps = 65/291 (22%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAW 88
           VV++G  + G LG      G   D+  P RV GL + V +++AG  HS+A+  +G VWAW
Sbjct: 170 VVAWGRNNYGQLG-----NGTNSDSSVPVRVEGL-NKVIAIAAGLNHSIALREDGTVWAW 223

Query: 89  GRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFA----------SGVVSSAIGDDG 138
           G N   QLG G   SR   N P  V GL  V   AA            SG V    G+  
Sbjct: 224 GYNINGQLGDGTSASR---NVPAPVGGLTGVTKIAAGCNHNLALVGPPSGGVKPTSGN-- 278

Query: 139 SLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTE-DGKLFGWG 197
           ++  WG +  GQLG    I     P   + +    + +++ G  H+LA T+ D KL  WG
Sbjct: 279 AVKAWGYNATGQLGDNSTINR-YTPVDTQGIWLGGVSQIAAGCNHSLAVTDSDNKLKAWG 337

Query: 198 YSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWE 257
            +  G++G                                      +G    +  P+   
Sbjct: 338 QNTSGQVG--------------------------------------DGTTDYRITPVP-V 358

Query: 258 PFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPV 308
           P L +G+++V  A G +H++VL  +  + S G+N  GQLG         PV
Sbjct: 359 PGL-KGIQLV--AGGREHTIVLLGDNTVRSWGANGSGQLGNGTTTESSTPV 406



 Score = 57.8 bits (138), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 78/282 (27%), Positives = 114/282 (40%), Gaps = 67/282 (23%)

Query: 87  AWGRNNEVQLGRGALESRATWNDPK----RVEGLDQVNVCAAFASGVVSS-----AIGDD 137
           AWG N   QLG G      TW D +     V GL    V    A G  S+     A+  D
Sbjct: 64  AWGNNRSGQLGDG------TWTDFRTTATTVLGLTSAEVVKIAAGGGGSATGHGLALLTD 117

Query: 138 GSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWG 197
            ++  WG +  GQLG G   +    P +V  L+  + V    GW H+LA  +D  +  WG
Sbjct: 118 RTVQSWGANGSGQLGDGSVFSHN-APGQVVNLSSARDVAAG-GW-HSLALLDDQTVVAWG 174

Query: 198 YSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWE 257
            +  G++GN                 + SD  +                           
Sbjct: 175 RNNYGQLGN----------------GTNSDSSV--------------------------- 191

Query: 258 PFLVEGV-EVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDIN--FHP 314
           P  VEG+ +V+ IA G +HS+ L  +G + + G N+ GQLG         P  +      
Sbjct: 192 PVRVEGLNKVIAIAAGLNHSIALREDGTVWAWGYNINGQLGDGTSASRNVPAPVGGLTGV 251

Query: 315 VSISSGLGHSLAICEVRSSNV--TGGARGIVSWGWNRSSQLG 354
             I++G  H+LA+    S  V  T G   + +WG+N + QLG
Sbjct: 252 TKIAAGCNHNLALVGPPSGGVKPTSG-NAVKAWGYNATGQLG 292



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 48/169 (28%), Positives = 79/169 (46%), Gaps = 12/169 (7%)

Query: 21  MRSASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGL-PSDVTSVSAGHYHSLAV 79
           ++  SG AV ++G  + G LG  +++     + Y P    G+    V+ ++AG  HSLAV
Sbjct: 272 VKPTSGNAVKAWGYNATGQLGDNSTI-----NRYTPVDTQGIWLGGVSQIAAGCNHSLAV 326

Query: 80  TN-NGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDG 138
           T+ +  + AWG+N   Q+G G  + R T   P  V GL  + + A      +   +  D 
Sbjct: 327 TDSDNKLKAWGQNTSGQVGDGTTDYRIT---PVPVPGLKGIQLVAGGREHTI--VLLGDN 381

Query: 139 SLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQ 187
           ++  WG +  GQLG G     +   + + AL G   +    G   +LA 
Sbjct: 382 TVRSWGANGSGQLGNGTTTESSTPVTTLTALTGVDKIAAPVGGDFSLAN 430



 Score = 46.6 bits (109), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 36/107 (33%), Positives = 53/107 (49%), Gaps = 13/107 (12%)

Query: 268 DIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDIN--FHPVSISSGLGHSL 325
           D+A G  HSL L  +  +++ G N YGQLG         PV +      ++I++GL HS+
Sbjct: 153 DVAAGGWHSLALLDDQTVVAWGRNNYGQLGNGTNSDSSVPVRVEGLNKVIAIAAGLNHSI 212

Query: 326 AICEVRSSNVTGGARGIVSWGWNRSSQL--GRMGPDNVPLVVEGLEG 370
           A+ E  +         + +WG+N + QL  G     NVP  V GL G
Sbjct: 213 ALREDGT---------VWAWGYNINGQLGDGTSASRNVPAPVGGLTG 250


>gi|380803301|gb|AFE73526.1| X-linked retinitis pigmentosa GTPase regulator isoform A, partial
           [Macaca mulatta]
          Length = 220

 Score = 87.8 bits (216), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 72/244 (29%), Positives = 115/244 (47%), Gaps = 46/244 (18%)

Query: 55  EPTRVPGL-PSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRV 113
           +PT V  L P  V   + G  H+L  T  G V+A G N+E QLG G  E R T+      
Sbjct: 7   KPTCVKALKPEKVKLAACGRNHTLVSTEGGNVYATGGNDEGQLGLGDTEERNTFRVISFF 66

Query: 114 EGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEK 173
               ++   +A ++   S+A+ +DG L++WG +  GQ+GL K++T   VP +V    G+ 
Sbjct: 67  TSEHKIKQLSAGSN--TSAALTEDGRLFMWGDNSEGQIGL-KNVTNVCVPHQV--TIGKP 121

Query: 174 IVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSS 233
           +  +S G+ H+   T DG+L+ +G   +G++G   + L +                    
Sbjct: 122 VSWISCGYYHSAFVTTDGELYMFGEPENGKLGLPNQLLSN-------------------- 161

Query: 234 TIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVY 293
              +  +LVSE  EK                 V+ +ACG +H++VL  N V  + G   +
Sbjct: 162 --HRTPQLVSEIPEK-----------------VIQVACGGEHTVVLTENAV-YTFGLGQF 201

Query: 294 GQLG 297
           GQLG
Sbjct: 202 GQLG 205



 Score = 44.7 bits (104), Expect = 0.077,   Method: Compositional matrix adjust.
 Identities = 52/202 (25%), Positives = 81/202 (40%), Gaps = 48/202 (23%)

Query: 103 SRATWNDPKRVEGL--DQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEA 160
           S++T + P  V+ L  ++V + A   +  + S  G  G+++  G +  GQLGLG D  E 
Sbjct: 1   SKSTISKPTCVKALKPEKVKLAACGRNHTLVSTEG--GNVYATGGNDEGQLGLG-DTEER 57

Query: 161 IVPSRVEALAGE-KIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSN 219
                +     E KI ++S G   + A TEDG+LF WG +++G+IG         P    
Sbjct: 58  NTFRVISFFTSEHKIKQLSAGSNTSAALTEDGRLFMWGDNSEGQIGLKNVTNVCVPHQVT 117

Query: 220 IDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVL 279
           I +                              P+ W            I+CG+ HS  +
Sbjct: 118 IGK------------------------------PVSW------------ISCGYYHSAFV 135

Query: 280 GRNGVLLSCGSNVYGQLGREKQ 301
             +G L   G    G+LG   Q
Sbjct: 136 TTDGELYMFGEPENGKLGLPNQ 157



 Score = 39.7 bits (91), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 40/138 (28%), Positives = 69/138 (50%), Gaps = 15/138 (10%)

Query: 33  GDGSQGALGLPTSLTGVGGDAYEPTRVP-GLPSDVTSVSAGHYHSLAVTNNGAVWAWGR- 90
           GD S+G +GL  ++T V      P +V  G P  V+ +S G+YHS  VT +G ++ +G  
Sbjct: 95  GDNSEGQIGL-KNVTNV----CVPHQVTIGKP--VSWISCGYYHSAFVTTDGELYMFGEP 147

Query: 91  -NNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRG 149
            N ++ L    L +  T   P+ V  + +  +    A G   + +  + +++ +G  + G
Sbjct: 148 ENGKLGLPNQLLSNHRT---PQLVSEIPEKVI--QVACGGEHTVVLTENAVYTFGLGQFG 202

Query: 150 QLGLGKDITEAIVPSRVE 167
           QLGLG  + E   P  +E
Sbjct: 203 QLGLGTFLFETSEPKVIE 220


>gi|355566686|gb|EHH23065.1| Guanine nucleotide exchange factor-related protein [Macaca mulatta]
          Length = 458

 Score = 87.8 bits (216), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 91/317 (28%), Positives = 136/317 (42%), Gaps = 51/317 (16%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAW 88
           V+S G  S G LG+P            P  +      V  ++AG  H+LA T +G V+ W
Sbjct: 122 VLSCGSNSFGQLGVPHGPR----RCVVPQAIELHKEKVVCIAAGLRHALAATASGIVFQW 177

Query: 89  GRNNEVQLGRGALESRA-----TWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVW 143
           G       GR     +      T  +P RV GL+        A    S+++ D G ++VW
Sbjct: 178 G-TGLASCGRRLCPGQTLPLFFTAKEPSRVTGLENSKAMCVLAGSDHSASLTDAGEVYVW 236

Query: 144 GKSKRGQLGLGKDITEAI---VPSRVEA--LAGEKIVKVSFGWGHALAQTEDGKLFGWGY 198
           G +K GQL      TEA    VP ++EA     EK+  V  GW H +AQTE GK+F WG 
Sbjct: 237 GSNKHGQLA-----TEAAFLPVPQKIEAHCFQNEKVTAVWSGWTHLVAQTETGKVFTWGR 291

Query: 199 SADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEP 258
           +  G++G   +  E   L+                +     +L++        MP     
Sbjct: 292 ADYGQLGRKLETYEGWKLEKQ-------------DSFLPCSRLLNN-------MPSSLHC 331

Query: 259 FLVEGVEVVDIACGFDHSL-VLGRNGVLLSCGSNVYGQL--GREKQDMGMFPVD--INFH 313
                    +++CG +H+L V+G  GV  S G N +G    G E       PV   ++  
Sbjct: 332 L----TGATEVSCGSEHNLAVIG--GVCYSWGWNEHGMCGDGTEANIWAPKPVQALLSSS 385

Query: 314 PVSISSGLGHSLAICEV 330
            + +  G GHSLA+C++
Sbjct: 386 GLLVGCGAGHSLALCQL 402



 Score = 68.6 bits (166), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 98/380 (25%), Positives = 153/380 (40%), Gaps = 55/380 (14%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGL--PSDVTSVSAGHYHSLAVTNNGAVW 86
           + ++G  S G LGL     G   D   P ++     P  V  ++ G  HS  VT+ G ++
Sbjct: 17  LFAWGANSYGQLGL-----GHKEDVLLPQQLNDFCKPRSVRRITGGGGHSAVVTDIGDLF 71

Query: 87  AWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKS 146
             G N + QLG G  E    +   K + G     V   +   ++   + ++G +   G +
Sbjct: 72  VCGLNKDGQLGLGHTEDIPYFTPCKSLFGCPIQQVACGWDFTII---LTENGQVLSCGSN 128

Query: 147 KRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGW--GYSADGRI 204
             GQLG+       +VP  +E L  EK+V ++ G  HALA T  G +F W  G ++ GR 
Sbjct: 129 SFGQLGVPHGPRRCVVPQAIE-LHKEKVVCIAAGLRHALAATASGIVFQWGTGLASCGRR 187

Query: 205 GNLGKALESSPLDSNIDRSS-----ESDQEIS-------SSTIEKAQKLVSEGMEKE--- 249
              G+ L   PL       S     E+ + +        S+++  A ++   G  K    
Sbjct: 188 LCPGQTL---PLFFTAKEPSRVTGLENSKAMCVLAGSDHSASLTDAGEVYVWGSNKHGQL 244

Query: 250 ----KYMPIIW--EPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGR----- 298
                ++P+    E    +  +V  +  G+ H +     G + + G   YGQLGR     
Sbjct: 245 ATEAAFLPVPQKIEAHCFQNEKVTAVWSGWTHLVAQTETGKVFTWGRADYGQLGRKLETY 304

Query: 299 -----EKQDMGMFPVD--INFHPVSISSGLGHSLAIC-EVRSSNVTGGARGIVSWGWNRS 350
                EKQD    P    +N  P S+    G +   C    +  V GG     SWGWN  
Sbjct: 305 EGWKLEKQD-SFLPCSRLLNNMPSSLHCLTGATEVSCGSEHNLAVIGGV--CYSWGWNEH 361

Query: 351 SQLGRMGPDNV--PLVVEGL 368
              G     N+  P  V+ L
Sbjct: 362 GMCGDGTEANIWAPKPVQAL 381


>gi|408500686|ref|YP_006864605.1| RCC1 repeat-containing protein [Bifidobacterium asteroides PRL2011]
 gi|408465510|gb|AFU71039.1| RCC1 repeat-containing protein [Bifidobacterium asteroides PRL2011]
          Length = 1073

 Score = 87.8 bits (216), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 77/293 (26%), Positives = 118/293 (40%), Gaps = 50/293 (17%)

Query: 67  TSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFA 126
           T  +AG   +LA+ ++G V+ WG N   QLGR    +    N P +V     ++    +A
Sbjct: 655 TQAAAGQKFALALGSDGYVYTWGNNTYDQLGRSTFGNNH--NAPDKVTPPAGIHYTRVYA 712

Query: 127 SGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWG--HA 184
               + A+G DG+L+ WG +  G LG G+    +  P RV A  G    +V  G    H 
Sbjct: 713 GDCFALALGSDGNLYAWGDNSAGALGQGRIGATSRNPLRVVAPEGITFTQVFTGPSSKHV 772

Query: 185 LAQTEDGKLFGWGYSADGRIGNLGKALES--SPLDSNIDRSSESDQEISSSTIEKAQKLV 242
           LA   DG L+ WGY    ++G    AL +   PL   +   +                  
Sbjct: 773 LALGSDGNLYSWGYDDSFQLGRQRNALTALGDPLPGKVQAPA------------------ 814

Query: 243 SEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQD 302
                               G+     + G + SL LG +  L S G+ +  QLG   Q 
Sbjct: 815 --------------------GITFTQASTGLNFSLALGSDNNLYSWGNGLKSQLG-NAQM 853

Query: 303 MGMFPVDINFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGR 355
           + M+P +     V + SG+  +  +     +   G    + SWG+N   QLGR
Sbjct: 854 ISMYPSN-----VIMPSGINFTRFVAGRYFAIAAGSDGNLYSWGYNDYGQLGR 901



 Score = 81.3 bits (199), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 100/353 (28%), Positives = 158/353 (44%), Gaps = 31/353 (8%)

Query: 29  VVSFGDGSQGALG-LPTSLTGVGGDAYEPTRVPGLP--SDVTSVSAGHYHSLAVTNNGAV 85
           + S+G+ SQG LG  PT        A  P RV  +P  +    +SAG  +++A+  N  +
Sbjct: 93  LYSWGNNSQGQLGRTPTD----SDPADRPGRV-DVPNGTHFLQISAGDDYAVAIDINHHL 147

Query: 86  WAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSS------AIGDDGS 139
           ++WG N + Q G+G   S +    P +V  +  VN   +F    VS+      A+  DG+
Sbjct: 148 YSWGNNEKGQAGQGISSSPSL--PPNQV--IPSVNATQSFVQ--VSTGPNYVLAVCSDGT 201

Query: 140 LWVWGKSKRGQLG--LGKDITEAIV--PSRVEALAGEKIVKVSFGWGHALAQTEDGKLFG 195
           ++ WG +  GQLG  +G  +T      P+ V    G KI +V+ G   +LA   DG ++ 
Sbjct: 202 VYSWGDNSSGQLGREVGGTMTHYGPGNPNPVSLPKGVKITQVTAGGKASLALASDGSVYS 261

Query: 196 WGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPII 255
           WG ++ G++G    A E +     +  +   +    S+       + S+G          
Sbjct: 262 WGDNSSGQLGRTPSASEPANRAYKMTTADGMNFSQISAGYRHILAVDSDGNTYSWGYGGT 321

Query: 256 WEP---FLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINF 312
            +P    L +G+    I+ G D+SLV   +G + S G N  GQLG   QD G    +   
Sbjct: 322 SQPSKVALPDGIRTRLISAGHDYSLVTASDGNIYSWGDNSSGQLG---QDTGGETTNQPG 378

Query: 313 HPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPDNVPLVV 365
             V+   G+ ++ AI   R     G    +  WG N SSQLG      VP+  
Sbjct: 379 KAVT-PDGVTYTQAIAGYRHILAMGSDGYLYGWGDNSSSQLGTGASSGVPVTT 430



 Score = 79.3 bits (194), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 91/314 (28%), Positives = 136/314 (43%), Gaps = 37/314 (11%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRV-PGLPSDVTSVSAGHYHSLAVTNNGAVWA 87
           V ++G+ +   LG  T     G +   P +V P      T V AG   +LA+ ++G ++A
Sbjct: 673 VYTWGNNTYDQLGRST----FGNNHNAPDKVTPPAGIHYTRVYAGDCFALALGSDGNLYA 728

Query: 88  WGRNNEVQLGRGALESRATWNDPKRV---EGLDQVNVCAAFASGVVSSAIGDDGSLWVWG 144
           WG N+   LG+G +   AT  +P RV   EG+    V    +S  V  A+G DG+L+ WG
Sbjct: 729 WGDNSAGALGQGRIG--ATSRNPLRVVAPEGITFTQVFTGPSSKHVL-ALGSDGNLYSWG 785

Query: 145 KSKRGQLGLGKDITEAI---VPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSAD 201
                QLG  ++   A+   +P +V+A AG    + S G   +LA   D  L+ WG   +
Sbjct: 786 YDDSFQLGRQRNALTALGDPLPGKVQAPAGITFTQASTGLNFSLALGSDNNLYSWG---N 842

Query: 202 GRIGNLGKALESSPLDSNIDRSSE-----------------SDQEISSSTIEKAQKLVSE 244
           G    LG A   S   SN+   S                  SD  + S       +L  +
Sbjct: 843 GLKSQLGNAQMISMYPSNVIMPSGINFTRFVAGRYFAIAAGSDGNLYSWGYNDYGQLGRD 902

Query: 245 GMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQ-DM 303
             +K  YMP   E     G+ ++    G +HS  +G +G   S G +  G LGR+   D 
Sbjct: 903 ISDKSDYMPTKLE--APAGITLIQPQAGDNHSSAIGSDGNTYSWGKSADGVLGRDTSGDQ 960

Query: 304 GMFPVDINFHPVSI 317
              P  + F  V I
Sbjct: 961 DSHPGKVIFPGVGI 974



 Score = 75.9 bits (185), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 81/308 (26%), Positives = 133/308 (43%), Gaps = 60/308 (19%)

Query: 66  VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAF 125
            +  SAG   SLA+ + G +++WG N++ QLGR   +S    + P RV+  +  +     
Sbjct: 74  FSQFSAGKDFSLALDSLGVLYSWGNNSQGQLGRTPTDSDPA-DRPGRVDVPNGTHFLQIS 132

Query: 126 ASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRV--EALAGEKIVKVSFGWGH 183
           A    + AI  +  L+ WG +++GQ G G   + ++ P++V     A +  V+VS G  +
Sbjct: 133 AGDDYAVAIDINHHLYSWGNNEKGQAGQGISSSPSLPPNQVIPSVNATQSFVQVSTGPNY 192

Query: 184 ALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVS 243
            LA   DG ++ WG ++ G++G                      +E+             
Sbjct: 193 VLAVCSDGTVYSWGDNSSGQLG----------------------REV------------- 217

Query: 244 EGMEKEKYMPIIWEPF-LVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGRE--- 299
            G     Y P    P  L +GV++  +  G   SL L  +G + S G N  GQLGR    
Sbjct: 218 -GGTMTHYGPGNPNPVSLPKGVKITQVTAGGKASLALASDGSVYSWGDNSSGQLGRTPSA 276

Query: 300 ----KQDMGMFPVD-INFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLG 354
                +   M   D +NF    IS+G  H LA+    ++          SWG+  +SQ  
Sbjct: 277 SEPANRAYKMTTADGMNFS--QISAGYRHILAVDSDGNT---------YSWGYGGTSQPS 325

Query: 355 RMG-PDNV 361
           ++  PD +
Sbjct: 326 KVALPDGI 333



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 52/182 (28%), Positives = 85/182 (46%), Gaps = 16/182 (8%)

Query: 24  ASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNG 83
           AS  +V S+GD S G LG   S +     AY+ T   G+  + + +SAG+ H LAV ++G
Sbjct: 254 ASDGSVYSWGDNSSGQLGRTPSASEPANRAYKMTTADGM--NFSQISAGYRHILAVDSDG 311

Query: 84  AVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVW 143
             ++WG     Q  + AL            +G+    + A     +V+++   DG+++ W
Sbjct: 312 NTYSWGYGGTSQPSKVALP-----------DGIRTRLISAGHDYSLVTAS---DGNIYSW 357

Query: 144 GKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGR 203
           G +  GQLG          P +     G    +   G+ H LA   DG L+GWG ++  +
Sbjct: 358 GDNSSGQLGQDTGGETTNQPGKAVTPDGVTYTQAIAGYRHILAMGSDGYLYGWGDNSSSQ 417

Query: 204 IG 205
           +G
Sbjct: 418 LG 419



 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 89/366 (24%), Positives = 138/366 (37%), Gaps = 56/366 (15%)

Query: 21  MRSASGTAVVSFGDGSQGALGLPT--SLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLA 78
           + +AS   + S+GD S G LG  T    T   G A  P  V       T   AG+ H LA
Sbjct: 346 LVTASDGNIYSWGDNSSGQLGQDTGGETTNQPGKAVTPDGV-----TYTQAIAGYRHILA 400

Query: 79  VTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGV-VSSAIGDD 137
           + ++G ++ WG N+  QLG GA  S      P + +        +A   G  ++    + 
Sbjct: 401 MGSDGYLYGWGDNSSSQLGTGA-SSGVPVTTPSKADFPQAFKFISAKLDGAPITDLTKNQ 459

Query: 138 GSLWVW--GKSKRGQLGLGKDIT----------EAIVPSRVEALAGEKIVKVSFGWGHAL 185
              W +     ++GQ+    D+T          +A +P + +          + G     
Sbjct: 460 NGTWNFRTPAHRKGQV----DVTVAWARNGHQPDAHLPYKYDGSTYSVTFDSAGGTPTPE 515

Query: 186 AQ---------------TEDGKLF-GWGYSADGRIGNLGKALESSPLDSNIDRSSESDQE 229
           AQ                +DG LF GW         N+       P+  +I  ++     
Sbjct: 516 AQRVMDGDQAVRPDKDPAKDGYLFDGWFLKDSKGDSNIAYDFNQ-PVSGDITLAAHF-SP 573

Query: 230 ISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCG 289
           +S  TI+K +   + G +  K  P    P    G+    I  G D SL LG +G L S G
Sbjct: 574 VSHWTIDKKEGPQTGG-QSVKLTP----PQGTRGIRFSWIQSGADFSLALGSDGNLYSWG 628

Query: 290 SNVYGQLGREKQDMGMFPVDINFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNR 349
            N   QLG    D  +         V   +G+ ++ A    + +   G    + +WG N 
Sbjct: 629 INYDYQLGHTTSDKPVV--------VETPAGVRYTQAAAGQKFALALGSDGYVYTWGNNT 680

Query: 350 SSQLGR 355
             QLGR
Sbjct: 681 YDQLGR 686


>gi|156083318|ref|XP_001609143.1| regulator of chromosome condensation (RCC1), domain containing
           protein [Babesia bovis T2Bo]
 gi|154796393|gb|EDO05575.1| regulator of chromosome condensation (RCC1), domain containing
           protein [Babesia bovis]
          Length = 1388

 Score = 87.8 bits (216), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 92/333 (27%), Positives = 148/333 (44%), Gaps = 47/333 (14%)

Query: 55  EPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVE 114
           EP  +    + +  ++ G  H+L  T  G V AWG N+  QLG G L  R+    P+ + 
Sbjct: 241 EPRLINHFSTKIKKIACGSNHTLVTTVEGMVLAWGANDSGQLGLGDLRPRSF---PEAIY 297

Query: 115 GLD-QVNVCAAFASGVVSSAIGDD-------GSLWVWGKSKRGQLGLGKDITEAIV--PS 164
            L+  +NV A   +    +    D       G+ WV+G +  G+LGLG+  T  I+  P 
Sbjct: 298 TLECGINVFAGLNNSCCITTTKHDNFINDEVGTAWVFGSASGGKLGLGEKCTANIIMTPR 357

Query: 165 RVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSN----- 219
           ++  ++G  + KV  G  H+L    DG ++  G  +DG++G LG    +S          
Sbjct: 358 KINYVSG--VYKVVLGHTHSLLLKHDGAIYATGAGSDGKLG-LGDIHSTSSFTKVNTDLR 414

Query: 220 -IDRSSESDQEISSSTIEK-----AQKLVSEGMEKEKYMPIIWEPFLVE------GVEVV 267
            ID +  +   ++ S         A K +++G E      +I EP +++      G+  V
Sbjct: 415 FIDIAVGASHSLAISMEHDLYGWGAGKYITKGNE------VIREPVIIDTLPSQVGIPKV 468

Query: 268 DIACGF-DHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFHP--VSISSGLGHS 324
                F  HSLV+   G L++ G N  GQLG       +  V+    P  V I+S +  S
Sbjct: 469 HEVVAFAQHSLVVTDQGHLIAWGDNSSGQLGVPIMSKDVRAVEFIEQPSLVLINSPVT-S 527

Query: 325 LAICEVRSSNVTGGARGIVSWGWNRSSQLGRMG 357
           +A     S+ +T    G   + W  SS  GR+G
Sbjct: 528 VATSRFFSACMTLNGDG---YAWGVSSD-GRLG 556



 Score = 55.8 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 77/317 (24%), Positives = 124/317 (39%), Gaps = 38/317 (11%)

Query: 66  VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAF 125
           V  VS G  HS  + ++G V+ WG     +LG   L        P  VE L    +    
Sbjct: 9   VKQVSCGDTHSACIDHDGKVYTWGCGKGGKLGHKILLDDVLV--PTVVESLSGNKIIQVE 66

Query: 126 ASGVVSSAIGDDGSLWVWGK------SKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSF 179
               ++ A+ + G ++ WG       S  G L        A VP  V   AG+K V ++ 
Sbjct: 67  CGTAMTLALDESGIVYQWGAVLGFTPSSSGTLPY-----MASVPREVTE-AGQKNVYITA 120

Query: 180 GWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQ 239
           G     A +E G L  WG  +  R+G+     + +P      RSS     +    I+K  
Sbjct: 121 GPYSCAAVSEHGDLKTWGVGSCFRLGHGTVNDQLTPKFVATLRSS-----VRVDDIKKIT 175

Query: 240 KLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSN--VYGQLG 297
            L ++ +    Y+P    P       +  ++ G  H  +L  NG + + G++  +     
Sbjct: 176 TLHTQDIATTNYIP---PPITANERRISQVSVGLTHGALLTCNGTVYAWGASKGIGYSTD 232

Query: 298 REKQDMGMFPVDINFHPV---SISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQ-- 352
            + ++    P  IN        I+ G  H+L         VT     +++WG N S Q  
Sbjct: 233 PDNEETYNEPRLINHFSTKIKKIACGSNHTL---------VTTVEGMVLAWGANDSGQLG 283

Query: 353 LGRMGPDNVPLVVEGLE 369
           LG + P + P  +  LE
Sbjct: 284 LGDLRPRSFPEAIYTLE 300



 Score = 48.1 bits (113), Expect = 0.006,   Method: Composition-based stats.
 Identities = 59/280 (21%), Positives = 110/280 (39%), Gaps = 44/280 (15%)

Query: 54  YEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRV 113
           Y P  +      ++ VS G  H   +T NG V+AWG +  +       ++  T+N+P+ +
Sbjct: 187 YIPPPITANERRISQVSVGLTHGALLTCNGTVYAWGASKGIGYSTDP-DNEETYNEPRLI 245

Query: 114 EGLD-QVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGE 172
                ++   A  ++  + + +  +G +  WG +  GQLGLG D+     P  +      
Sbjct: 246 NHFSTKIKKIACGSNHTLVTTV--EGMVLAWGANDSGQLGLG-DLRPRSFPEAI------ 296

Query: 173 KIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISS 232
                                    Y+ +  I N+   L +S   +     +  + E+ +
Sbjct: 297 -------------------------YTLECGI-NVFAGLNNSCCITTTKHDNFINDEVGT 330

Query: 233 STIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVE-VVDIACGFDHSLVLGRNGVLLSCGSN 291
           + +  +      G+ ++    II  P  +  V  V  +  G  HSL+L  +G + + G+ 
Sbjct: 331 AWVFGSASGGKLGLGEKCTANIIMTPRKINYVSGVYKVVLGHTHSLLLKHDGAIYATGAG 390

Query: 292 VYGQLG----REKQDMGMFPVDINFHPVSISSGLGHSLAI 327
             G+LG               D+ F  + I+ G  HSLAI
Sbjct: 391 SDGKLGLGDIHSTSSFTKVNTDLRF--IDIAVGASHSLAI 428



 Score = 48.1 bits (113), Expect = 0.006,   Method: Composition-based stats.
 Identities = 42/147 (28%), Positives = 63/147 (42%), Gaps = 26/147 (17%)

Query: 30  VSFGDGSQGALGLPTSLTGVGGDAY---------EPTRVPGLPSDVT-----SVSAGHYH 75
           ++ G     A+ +   L G G   Y         EP  +  LPS V       V A   H
Sbjct: 418 IAVGASHSLAISMEHDLYGWGAGKYITKGNEVIREPVIIDTLPSQVGIPKVHEVVAFAQH 477

Query: 76  SLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVN-------VCAAFASG 128
           SL VT+ G + AWG N+  QLG   +       D + VE ++Q +       V +   S 
Sbjct: 478 SLVVTDQGHLIAWGDNSSGQLGVPIMS-----KDVRAVEFIEQPSLVLINSPVTSVATSR 532

Query: 129 VVSSAIGDDGSLWVWGKSKRGQLGLGK 155
             S+ +  +G  + WG S  G+LG+G+
Sbjct: 533 FFSACMTLNGDGYAWGVSSDGRLGIGE 559



 Score = 43.9 bits (102), Expect = 0.14,   Method: Composition-based stats.
 Identities = 28/82 (34%), Positives = 44/82 (53%), Gaps = 5/82 (6%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGL---PSDVTSVSAGHYHSLAVTNNGAV 85
           ++++GD S G LG+P     V   A E    P L    S VTSV+   + S  +T NG  
Sbjct: 487 LIAWGDNSSGQLGVPIMSKDV--RAVEFIEQPSLVLINSPVTSVATSRFFSACMTLNGDG 544

Query: 86  WAWGRNNEVQLGRGALESRATW 107
           +AWG +++ +LG G   ++ T+
Sbjct: 545 YAWGVSSDGRLGIGETHNKVTY 566


>gi|449297034|gb|EMC93053.1| hypothetical protein BAUCODRAFT_76837 [Baudoinia compniacensis UAMH
           10762]
          Length = 510

 Score = 87.8 bits (216), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 66/191 (34%), Positives = 97/191 (50%), Gaps = 14/191 (7%)

Query: 35  GSQGALGL-PTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNE 93
           G++G  G  PT++T     A  P  VP L   +T ++AG  H+LA+ +NGAV+AWG   +
Sbjct: 227 GNEGIFGFNPTTIT-----ANRPVLVPEL-KKITHIAAGANHALALASNGAVFAWGSGQQ 280

Query: 94  VQLGRGALESRATWNDPKRVEGLDQ--VNVCAAFASGVVSS-AIGDDGSLWVWGKSKRGQ 150
            QLGR  +E   T     R  GL +   N   A  +G   S AI   G++  WG +  G+
Sbjct: 281 NQLGRRVVERTKTEGLKPREFGLPKGAKNGIVAIETGSYHSFAIDKAGNVHAWGLNNYGE 340

Query: 151 LGL----GKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGN 206
            G+    G D    + P  +EAL G+K++ +  G  H+L  TEDG    WG    G+IG 
Sbjct: 341 TGIPDNAGADEAFVLKPRIIEALQGKKVISIKGGGHHSLCATEDGDCLIWGRIDGGQIGI 400

Query: 207 LGKALESSPLD 217
               +++ P D
Sbjct: 401 SEDTIKAMPED 411



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 97/406 (23%), Positives = 161/406 (39%), Gaps = 82/406 (20%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSD---VTSVSAGHYHSLAVTNNGAV 85
           +  FG+G+ G LGL T+   +  D   P   P L +D   V  +SAG  H +A+T++  +
Sbjct: 79  IYVFGEGTAGELGLGTAKNAI--DVKRPRLNPNLAADKVGVVQLSAGGMHVVALTHDNKI 136

Query: 86  WAWGRNNEVQLGR-----GALESRATWN-------------DPKR-------------VE 114
             WG N++  LGR     G L+     +             +PK               +
Sbjct: 137 LTWGVNDQGALGRDTTWEGGLKDMDAADDDDDDDDEDDNGLNPKESTPGEVDFSTSDIAD 196

Query: 115 GLDQVNVCAAFASGVVSSAIGDDGSLWVWG--KSKRGQLGLGKDITEAIVPSRVEALAGE 172
           G   V V A  +    S A+ DDG ++ WG  +   G  G       A  P  V  L  +
Sbjct: 197 GTRWVQVVAGDS---CSFALTDDGFVYGWGTFRGNEGIFGFNPTTITANRPVLVPEL--K 251

Query: 173 KIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESS------PLDSNIDRSSES 226
           KI  ++ G  HALA   +G +F WG     ++G   + +E +      P +  + + +++
Sbjct: 252 KITHIAAGANHALALASNGAVFAWGSGQQNQLGR--RVVERTKTEGLKPREFGLPKGAKN 309

Query: 227 ------DQEISSSTIEKAQKLVSEGMEK--EKYMP--------IIWEPFLVE---GVEVV 267
                      S  I+KA  + + G+    E  +P         + +P ++E   G +V+
Sbjct: 310 GIVAIETGSYHSFAIDKAGNVHAWGLNNYGETGIPDNAGADEAFVLKPRIIEALQGKKVI 369

Query: 268 DIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVD-----------INFHPVS 316
            I  G  HSL    +G  L  G    GQ+G  +  +   P D           I   P  
Sbjct: 370 SIKGGGHHSLCATEDGDCLIWGRIDGGQIGISEDTIKAMPEDKVKSDESGRPRILLVPTK 429

Query: 317 ISSGLGHSLAICEVRSSNVTGGARGIV-SWGWNRSSQLGRMGPDNV 361
           +S+  G    +      N+     G   SWG++ + Q G+   ++V
Sbjct: 430 VSAIEGAVSHVTTSSDHNIVITKEGRAWSWGFSANYQTGQGTTEDV 475



 Score = 38.9 bits (89), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 24/71 (33%), Positives = 40/71 (56%), Gaps = 4/71 (5%)

Query: 139 SLWVWGKSKRGQLGLG--KDITEAIVPSRVEALAGEK--IVKVSFGWGHALAQTEDGKLF 194
           +++V+G+   G+LGLG  K+  +   P     LA +K  +V++S G  H +A T D K+ 
Sbjct: 78  NIYVFGEGTAGELGLGTAKNAIDVKRPRLNPNLAADKVGVVQLSAGGMHVVALTHDNKIL 137

Query: 195 GWGYSADGRIG 205
            WG +  G +G
Sbjct: 138 TWGVNDQGALG 148


>gi|307204521|gb|EFN83201.1| Probable E3 ubiquitin-protein ligase HERC2 [Harpegnathos saltator]
          Length = 4791

 Score = 87.8 bits (216), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 88/304 (28%), Positives = 146/304 (48%), Gaps = 43/304 (14%)

Query: 19   IFMRSASGTAVVSFGDGSQGALGLPTSLTGVGGDAY---EPTRVPGLPSDV---TSVSAG 72
            +F+ S  G  + + G+G+ G LGL        GD Y   EP  +P L   V    +V +G
Sbjct: 2996 LFIVSQEG-KLYACGEGTNGRLGL--------GDDYNMCEPKLIPFLSQYVIKKVAVHSG 3046

Query: 73   HYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSS 132
              H+LA+T +G V++WG   + +LG G      T + P+ +E L    +         S+
Sbjct: 3047 GKHALALTQDGKVFSWGEGEDGKLGHGNC---TTLDKPRLIESLKSKRIRDIACGSGHSA 3103

Query: 133  AIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGW--GHALAQTED 190
            AI  +G L+ WG  + G+LG G D    + P  V+AL+G+++V+V+ G      ++ T D
Sbjct: 3104 AIASNGELYTWGLGEYGRLGHG-DTATQMKPKLVQALSGQRVVQVACGSRDAQTMSLTAD 3162

Query: 191  GKLFGWGYSADGRIGNLGKALESSPLDSNIDR-------SSESDQEISSSTIEKAQKLVS 243
            G ++ WG    G++G  G     +PL   +DR         E   + S + + K  ++ +
Sbjct: 3163 GCVYTWGDGDFGKLGRGGSDGCYTPL--LVDRLNGLGVVQVECGAQFSLA-LTKYGEVWT 3219

Query: 244  EGMEKEKYMPI-------IWEPFLVEGV---EVVDIACGFDHSLVLGRNGVLLSCGSNVY 293
             G  K  Y  +       + +P LVEG+   ++V +A G  H L +   G + + G N +
Sbjct: 3220 WG--KGDYFRLGHGNDHHVRKPTLVEGLRGKKIVHVAVGALHCLAVTDTGQVYAWGDNDH 3277

Query: 294  GQLG 297
            GQ G
Sbjct: 3278 GQQG 3281



 Score = 84.3 bits (207), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 100/368 (27%), Positives = 160/368 (43%), Gaps = 78/368 (21%)

Query: 19   IFMRSASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDV-------TSVSA 71
            +F  +A G  V S G G+ G LG       +GG   +   VP L   +        +V++
Sbjct: 3977 LFAVTADG-KVYSTGYGAAGRLG-------IGGT--DSVMVPTLLESIQHVFIKKVAVNS 4026

Query: 72   GHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVS 131
            G  H LA+++ G V++WG  ++ +LG G   +R +++ PK VE L  + +      G  S
Sbjct: 4027 GGKHCLALSSEGHVYSWGEGDDGKLGHG---NRLSYDRPKLVEDLLGIEIVDIACGGHHS 4083

Query: 132  SAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHA--LAQTE 189
            +AI   G L+ WGK + G+LG G D  + + P  VEAL   K++ V+ G G A  L  T+
Sbjct: 4084 AAITSAGWLYTWGKGRYGRLGHG-DSDDQLRPKVVEALQDYKVIDVACGSGDAQTLCVTD 4142

Query: 190  DGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKE 249
            D  ++ WG   DG  G LG+                                 S+G +  
Sbjct: 4143 DDNVWSWG---DGDYGKLGRG-------------------------------GSDGCK-- 4166

Query: 250  KYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVD 309
              +P+  +     G+ V+ + CG   S+ L R+G + + G   Y +LG    D    P  
Sbjct: 4167 --VPLKIDSL--AGLGVIKVECGSQFSVALTRSGAVYTWGKGDYHRLGHGTDDHVRRPRK 4222

Query: 310  INF----HPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQL--GRMGPDNVPL 363
            +        +SI++G  H +A C  +          + +WG N   QL  G       P 
Sbjct: 4223 VAALQGKKIISIATGSLHCVA-CSDKGE--------VFTWGDNDEGQLGDGTTSALQRPR 4273

Query: 364  VVEGLEGE 371
            +V  L+G+
Sbjct: 4274 LVHALQGK 4281



 Score = 81.6 bits (200), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 93/344 (27%), Positives = 143/344 (41%), Gaps = 53/344 (15%)

Query: 50  GGDAYEPTRVPGLPSDVTSVSAGH---YHSLAVTNNGAVWAWGRNNEVQLGRGALESRAT 106
           G +   P R+        ++ A H    H LA+T +G V++WG  +  +LG G      +
Sbjct: 492 GSETQYPQRMHSFSDKPVTMIASHSDGKHYLALTQDGCVYSWGNGDGGRLGHG---DNIS 548

Query: 107 WNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRV 166
            ++PK +E L + N+         S+A+   G L+ WG+   G+LG G +  +  VP+ V
Sbjct: 549 HDEPKLIETLLEKNIIFIACGSTYSAALSASGELYTWGRGNYGRLGHGSN-DDVTVPTLV 607

Query: 167 EALAGEKIVKVSFGWG--HALAQTEDGKLFGWGYSADGRIGNLGKALESSP------LDS 218
             L G  +V V+ G G    L  T  G +F WG    G++G  G     +P      LD 
Sbjct: 608 TTLKGHMVVHVACGSGDSQTLCVTASGIVFSWGDGDYGKLGRGGSDGSKTPKIVDKLLDI 667

Query: 219 NIDRSSESDQEISSSTIE---------KAQKLVSEGMEKEKYMPIIWEPFLVEGV---EV 266
           N+ R     Q  ++ T            A +L     E  +Y      P L+E +   ++
Sbjct: 668 NVVRVFCGGQFSAALTARGEVYTWGKGDAYRLGHGNEEHVRY------PKLIESLRDKKI 721

Query: 267 VDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFHPVSISSGLGHSLA 326
            D++ G  H L L  +  +   G N YGQ            +D    PV     L  +L+
Sbjct: 722 KDLSVGGTHILALTEDQFVYGWGRNDYGQ------------IDPTLGPVVSEPSLCPTLS 769

Query: 327 ICEVRSSNVTGGARGIV-SWGWNRSSQLGRMGPDNVPLVVEGLE 369
                S NV G A G   S+ W  S+  G  G + V  VV+  E
Sbjct: 770 -----SKNVIGLASGPTQSFAWCMSAWSG--GANRVAFVVDICE 806



 Score = 81.6 bits (200), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 63/185 (34%), Positives = 93/185 (50%), Gaps = 13/185 (7%)

Query: 23  SASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVT---SVSAGHYHSLAV 79
           SASG  + ++G G+ G LG      G   D   PT V  L   +    +  +G   +L V
Sbjct: 577 SASG-ELYTWGRGNYGRLG-----HGSNDDVTVPTLVTTLKGHMVVHVACGSGDSQTLCV 630

Query: 80  TNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGS 139
           T +G V++WG  +  +LGRG  +   T   PK V+ L  +NV   F  G  S+A+   G 
Sbjct: 631 TASGIVFSWGDGDYGKLGRGGSDGSKT---PKIVDKLLDINVVRVFCGGQFSAALTARGE 687

Query: 140 LWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYS 199
           ++ WGK    +LG G +      P  +E+L  +KI  +S G  H LA TED  ++GWG +
Sbjct: 688 VYTWGKGDAYRLGHGNE-EHVRYPKLIESLRDKKIKDLSVGGTHILALTEDQFVYGWGRN 746

Query: 200 ADGRI 204
             G+I
Sbjct: 747 DYGQI 751



 Score = 74.7 bits (182), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 79/297 (26%), Positives = 122/297 (41%), Gaps = 59/297 (19%)

Query: 82   NGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLW 141
            +GA++ WG N+  QL  G LE  A    P   E L  +             A+  DG ++
Sbjct: 3931 SGAIYGWGHNHRGQL--GGLEG-AKIKLPAPCESLSALRPIQLAGGEQTLFAVTADGKVY 3987

Query: 142  VWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWG--HALAQTEDGKLFGWGYS 199
              G    G+LG+G      +VP+ +E++    I KV+   G  H LA + +G ++ WG  
Sbjct: 3988 STGYGAAGRLGIG-GTDSVMVPTLLESIQHVFIKKVAVNSGGKHCLALSSEGHVYSWGEG 4046

Query: 200  ADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPF 259
             DG++G+  +     P                        KLV + +             
Sbjct: 4047 DDGKLGHGNRLSYDRP------------------------KLVEDLL------------- 4069

Query: 260  LVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDI----NFHPV 315
               G+E+VDIACG  HS  +   G L + G   YG+LG    D  + P  +    ++  +
Sbjct: 4070 ---GIEIVDIACGGHHSAAITSAGWLYTWGKGRYGRLGHGDSDDQLRPKVVEALQDYKVI 4126

Query: 316  SISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPD--NVPLVVEGLEG 370
             ++ G G +  +C     NV        SWG     +LGR G D   VPL ++ L G
Sbjct: 4127 DVACGSGDAQTLCVTDDDNVW-------SWGDGDYGKLGRGGSDGCKVPLKIDSLAG 4176



 Score = 71.2 bits (173), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 59/186 (31%), Positives = 88/186 (47%), Gaps = 12/186 (6%)

Query: 24   ASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLP-SDVTSVSAGHY--HSLAVT 80
            AS   + ++G G  G LG      G      +P  V  L    V  V+ G     ++++T
Sbjct: 3106 ASNGELYTWGLGEYGRLG-----HGDTATQMKPKLVQALSGQRVVQVACGSRDAQTMSLT 3160

Query: 81   NNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSL 140
             +G V+ WG  +  +LGRG  +   T   P  V+ L+ + V         S A+   G +
Sbjct: 3161 ADGCVYTWGDGDFGKLGRGGSDGCYT---PLLVDRLNGLGVVQVECGAQFSLALTKYGEV 3217

Query: 141  WVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSA 200
            W WGK    +LG G D      P+ VE L G+KIV V+ G  H LA T+ G+++ WG + 
Sbjct: 3218 WTWGKGDYFRLGHGND-HHVRKPTLVEGLRGKKIVHVAVGALHCLAVTDTGQVYAWGDND 3276

Query: 201  DGRIGN 206
             G+ GN
Sbjct: 3277 HGQQGN 3282



 Score = 70.5 bits (171), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 86/302 (28%), Positives = 121/302 (40%), Gaps = 61/302 (20%)

Query: 78   AVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDD 137
            A     AV+ WG N++ QLG G   S+     P R E L ++              +  +
Sbjct: 2946 APPQQSAVYVWGLNDKDQLG-GLKGSKIKI--PVRSEVLSKLKPIHIAGGSKTLFIVSQE 3002

Query: 138  GSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWG--HALAQTEDGKLFG 195
            G L+  G+   G+LGLG D      P  +  L+   I KV+   G  HALA T+DGK+F 
Sbjct: 3003 GKLYACGEGTNGRLGLGDDYN-MCEPKLIPFLSQYVIKKVAVHSGGKHALALTQDGKVFS 3061

Query: 196  WGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPII 255
            WG   DG++G+                        + +T++K                  
Sbjct: 3062 WGEGEDGKLGH-----------------------GNCTTLDK------------------ 3080

Query: 256  WEPFLVEGVE---VVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINF 312
              P L+E ++   + DIACG  HS  +  NG L + G   YG+LG       M P     
Sbjct: 3081 --PRLIESLKSKRIRDIACGSGHSAAIASNGELYTWGLGEYGRLGHGDTATQMKP----- 3133

Query: 313  HPVSISSGLGHSLAICEVRSSNVTG-GARGIV-SWGWNRSSQLGRMGPD--NVPLVVEGL 368
              V   SG       C  R +      A G V +WG     +LGR G D    PL+V+ L
Sbjct: 3134 KLVQALSGQRVVQVACGSRDAQTMSLTADGCVYTWGDGDFGKLGRGGSDGCYTPLLVDRL 3193

Query: 369  EG 370
             G
Sbjct: 3194 NG 3195



 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 51/158 (32%), Positives = 74/158 (46%), Gaps = 12/158 (7%)

Query: 31   SFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPS-DVTSVSAGHYHSLAVTNNGAVWAWG 89
            S+GDG  G LG      G       P ++  L    V  V  G   S+A+T +GAV+ WG
Sbjct: 4148 SWGDGDYGKLG-----RGGSDGCKVPLKIDSLAGLGVIKVECGSQFSVALTRSGAVYTWG 4202

Query: 90   RNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRG 149
            + +  +LG G  +       P++V  L    + +     +   A  D G ++ WG +  G
Sbjct: 4203 KGDYHRLGHGTDDH---VRRPRKVAALQGKKIISIATGSLHCVACSDKGEVFTWGDNDEG 4259

Query: 150  QLGLGKDITEAIV-PSRVEALAGEKIVKVSFGWGHALA 186
            QLG G   T A+  P  V AL G+KI +V+ G  H LA
Sbjct: 4260 QLGDG--TTSALQRPRLVHALQGKKITRVACGSAHTLA 4295



 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 75/309 (24%), Positives = 126/309 (40%), Gaps = 55/309 (17%)

Query: 69   VSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQ--VNVCAAFA 126
            ++ G      V+  G ++A G     +LG G         +PK +  L Q  +   A  +
Sbjct: 2989 IAGGSKTLFIVSQEGKLYACGEGTNGRLGLG---DDYNMCEPKLIPFLSQYVIKKVAVHS 3045

Query: 127  SGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALA 186
             G  + A+  DG ++ WG+ + G+LG G + T    P  +E+L  ++I  ++ G GH+ A
Sbjct: 3046 GGKHALALTQDGKVFSWGEGEDGKLGHG-NCTTLDKPRLIESLKSKRIRDIACGSGHSAA 3104

Query: 187  QTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGM 246
               +G+L+ WG    GR+G+   A +  P                        KLV    
Sbjct: 3105 IASNGELYTWGLGEYGRLGHGDTATQMKP------------------------KLVQA-- 3138

Query: 247  EKEKYMPIIWEPFLVEGVEVVDIACGFD--HSLVLGRNGVLLSCGSNVYGQLGREKQDMG 304
                          + G  VV +ACG     ++ L  +G + + G   +G+LGR   D  
Sbjct: 3139 --------------LSGQRVVQVACGSRDAQTMSLTADGCVYTWGDGDFGKLGRGGSDGC 3184

Query: 305  MFPVDINFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPDNV--P 362
              P+ ++       +GLG     C  + S        + +WG     +LG     +V  P
Sbjct: 3185 YTPLLVDR-----LNGLGVVQVECGAQFSLALTKYGEVWTWGKGDYFRLGHGNDHHVRKP 3239

Query: 363  LVVEGLEGE 371
             +VEGL G+
Sbjct: 3240 TLVEGLRGK 3248



 Score = 62.0 bits (149), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 52/162 (32%), Positives = 71/162 (43%), Gaps = 14/162 (8%)

Query: 28   AVVSFGDGSQGALGLPTSLTGVGGDAYEPT---RVPGLPSDVTSVSAGHYHSLAVTNNGA 84
             V ++GDG  G LG      G     Y P    R+ GL   V  V  G   SLA+T  G 
Sbjct: 3164 CVYTWGDGDFGKLG-----RGGSDGCYTPLLVDRLNGL--GVVQVECGAQFSLALTKYGE 3216

Query: 85   VWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWG 144
            VW WG+ +  +LG G   +      P  VEGL    +       +   A+ D G ++ WG
Sbjct: 3217 VWTWGKGDYFRLGHG---NDHHVRKPTLVEGLRGKKIVHVAVGALHCLAVTDTGQVYAWG 3273

Query: 145  KSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALA 186
             +  GQ G G  I     PS V  L   ++ +VS G  H++A
Sbjct: 3274 DNDHGQQGNGTTIVNR-KPSLVHELDDTRMNRVSCGSSHSIA 3314



 Score = 62.0 bits (149), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 84/324 (25%), Positives = 131/324 (40%), Gaps = 63/324 (19%)

Query: 62   LPSDVTSVSA--------GHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRV 113
            LP+   S+SA        G     AVT +G V++ G     +LG G  +S      P  +
Sbjct: 3955 LPAPCESLSALRPIQLAGGEQTLFAVTADGKVYSTGYGAAGRLGIGGTDSVMV---PTLL 4011

Query: 114  EGLDQVNV--CAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAG 171
            E +  V +   A  + G    A+  +G ++ WG+   G+LG G  ++    P  VE L G
Sbjct: 4012 ESIQHVFIKKVAVNSGGKHCLALSSEGHVYSWGEGDDGKLGHGNRLSYD-RPKLVEDLLG 4070

Query: 172  EKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEIS 231
             +IV ++ G  H+ A T  G L+ WG    GR G LG                +SD ++ 
Sbjct: 4071 IEIVDIACGGHHSAAITSAGWLYTWG---KGRYGRLGHG--------------DSDDQLR 4113

Query: 232  SSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGF--DHSLVLGRNGVLLSCG 289
               +E  Q                         +V+D+ACG     +L +  +  + S G
Sbjct: 4114 PKVVEALQD-----------------------YKVIDVACGSGDAQTLCVTDDDNVWSWG 4150

Query: 290  SNVYGQLGREKQDMGMFPVDINFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNR 349
               YG+LGR   D    P+ I+       +GLG     C  + S     +  + +WG   
Sbjct: 4151 DGDYGKLGRGGSDGCKVPLKIDS-----LAGLGVIKVECGSQFSVALTRSGAVYTWGKGD 4205

Query: 350  SSQLGRMGPDNV--PLVVEGLEGE 371
              +LG    D+V  P  V  L+G+
Sbjct: 4206 YHRLGHGTDDHVRRPRKVAALQGK 4229


>gi|209155120|gb|ACI33792.1| RCC2 homolog [Salmo salar]
          Length = 569

 Score = 87.4 bits (215), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 78/287 (27%), Positives = 123/287 (42%), Gaps = 23/287 (8%)

Query: 75  HSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAI 134
           HSL +T  G +W+WGRN + QLG G  +       PK +E L    V AA      + A+
Sbjct: 208 HSLLITTEGKLWSWGRNEKGQLGHGDTKR---LEAPKLIEPLADEVVVAAACGRNHTLAL 264

Query: 135 GDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLF 194
            + G+ + +G++K GQLG G      + P+ ++   G+ +VKV+ G   ++     G L+
Sbjct: 265 TEGGTAYSFGENKLGQLGQGNQTDAVLSPALIQ-YNGQPLVKVACGAEFSMVVDCKGNLY 323

Query: 195 GWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPI 254
            +G    G++G+             I R+     E    TI +   +  E  +  +  P 
Sbjct: 324 SFGCPEYGQLGHNSDG-------KFIARAQRI--EFDCETIARRVAIFIEKSKDGQVTP- 373

Query: 255 IWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFHP 314
                 V  V V D+ACG +H+L+L     + S G   YG+LG  +Q   M P  +    
Sbjct: 374 ------VPNVVVRDVACGGNHTLILDSQKRVFSWGFGGYGRLGHTEQKDEMVPRLVKLFD 427

Query: 315 VSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPDNV 361
                G G S      + S       G+  WG   +S+   M P  V
Sbjct: 428 F---PGRGASQIYTGYQCSFAVNEMGGLFFWGVTNTSRESTMYPKAV 471


>gi|418730551|ref|ZP_13289045.1| chromosome condensation regulator RCC1 repeat protein [Leptospira
           interrogans str. UI 12758]
 gi|410774760|gb|EKR54764.1| chromosome condensation regulator RCC1 repeat protein [Leptospira
           interrogans str. UI 12758]
          Length = 506

 Score = 87.4 bits (215), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 88/295 (29%), Positives = 137/295 (46%), Gaps = 30/295 (10%)

Query: 29  VVSFGDGSQGALGLPTSLTGVG-----GDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNG 83
           V ++G  S+G LG+  + T        G+   PT +PG+ +D    + G  H+L + ++G
Sbjct: 199 VYTWGANSKGQLGIGNNNTDPARASDPGNRQPPTEIPGI-NDAVMGAYGFNHALVLKSDG 257

Query: 84  AVWAWGRNNEVQLGRGA--LESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLW 141
            V A+G+NN  QLG G   L   +  ++P  V  L   NV    A    S+A+ ++G ++
Sbjct: 258 TVVAFGQNNVGQLGNGENNLNRNSFSSNPVNVVQLR--NVIQVIAGSEHSAALTENGEVY 315

Query: 142 VWGKSKRGQLGLG---KDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGY 198
           +WG+++ G LG G      T   VP +VE L+  KI +++ G  H LA T DGK++ WG 
Sbjct: 316 IWGRNQYGNLGNGIISPANTVQSVPVKVEGLS--KIKQIANGRDHILALTSDGKIYSWGL 373

Query: 199 SADGRIGNLGKALESSPLDSNIDRSSESDQEI-----SSSTIEKAQKLVSEGME------ 247
           +A G++G  G              + +    I      S  I K  ++   G        
Sbjct: 374 NASGQLGIGGNGNPPPTPIPTQILNIQDVASIWAGGTQSFAILKNGEVKGWGANGNMASL 433

Query: 248 --KEKYMPIIWEPF-LVEGVE-VVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGR 298
              E     ++EP   V G++ VV   CG  H+  L  NG +   G N  G LGR
Sbjct: 434 ALGESNTQKVYEPNKAVVGIDNVVHFGCGATHNFALLGNGEIYGWGWNFKGSLGR 488



 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 82/315 (26%), Positives = 126/315 (40%), Gaps = 78/315 (24%)

Query: 67  TSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRG-----ALESRATWNDPKRVEGLDQVNV 121
           T +SAG  HS  + N G ++  GRNN  QLG G      +  R    DP R       ++
Sbjct: 129 TKLSAGGAHSGFLIN-GELYTVGRNNFGQLGTGISTGDGINDRIVKVDPIR-------DI 180

Query: 122 CAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSR----------VEALAG 171
            +   +   S AI  +G ++ WG + +GQLG+G + T+   P+R           E    
Sbjct: 181 FSIHFNQNNSMAISQNGRVYTWGANSKGQLGIGNNNTD---PARASDPGNRQPPTEIPGI 237

Query: 172 EKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEIS 231
              V  ++G+ HAL    DG +  +G +  G++GN          ++N++R+S S   ++
Sbjct: 238 NDAVMGAYGFNHALVLKSDGTVVAFGQNNVGQLGN---------GENNLNRNSFSSNPVN 288

Query: 232 SSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSN 291
                                       +V+   V+ +  G +HS  L  NG +   G N
Sbjct: 289 ----------------------------VVQLRNVIQVIAGSEHSAALTENGEVYIWGRN 320

Query: 292 VYGQLGR----EKQDMGMFPVDIN--FHPVSISSGLGHSLAICEVRSSNVTGGARGIVSW 345
            YG LG         +   PV +        I++G  H LA+              I SW
Sbjct: 321 QYGNLGNGIISPANTVQSVPVKVEGLSKIKQIANGRDHILALTSDGK---------IYSW 371

Query: 346 GWNRSSQLGRMGPDN 360
           G N S QLG  G  N
Sbjct: 372 GLNASGQLGIGGNGN 386



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 65/243 (26%), Positives = 108/243 (44%), Gaps = 51/243 (20%)

Query: 65  DVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALES---RAT----WNDPKRVEGL- 116
           D+ S+     +S+A++ NG V+ WG N++ QLG G   +   RA+       P  + G+ 
Sbjct: 179 DIFSIHFNQNNSMAISQNGRVYTWGANSKGQLGIGNNNTDPARASDPGNRQPPTEIPGIN 238

Query: 117 DQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDIT--EAIVPSRVEALAGEKI 174
           D V     F   +V   +  DG++  +G++  GQLG G++     +   + V  +    +
Sbjct: 239 DAVMGAYGFNHALV---LKSDGTVVAFGQNNVGQLGNGENNLNRNSFSSNPVNVVQLRNV 295

Query: 175 VKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSST 234
           ++V  G  H+ A TE+G+++ WG +   + GNLG  +                  IS + 
Sbjct: 296 IQVIAGSEHSAALTENGEVYIWGRN---QYGNLGNGI------------------ISPAN 334

Query: 235 IEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYG 294
             ++  +  EG+ K K                  IA G DH L L  +G + S G N  G
Sbjct: 335 TVQSVPVKVEGLSKIK-----------------QIANGRDHILALTSDGKIYSWGLNASG 377

Query: 295 QLG 297
           QLG
Sbjct: 378 QLG 380


>gi|403263471|ref|XP_003924055.1| PREDICTED: E3 ISG15--protein ligase HERC5 [Saimiri boliviensis
           boliviensis]
          Length = 1024

 Score = 87.4 bits (215), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 68/228 (29%), Positives = 110/228 (48%), Gaps = 24/228 (10%)

Query: 24  ASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVP-------GLPSDVTSVSAGHYHS 76
           + G  + ++G    G LG+        G  +  T  P       G+P  +  +SAG  HS
Sbjct: 154 SKGGELFAWGQNLHGQLGV--------GRKFPSTTTPQIVEHLSGIP--LAQISAGEAHS 203

Query: 77  LAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGD 136
           +A++ +G +++WG+N   QLG    ES+   + P  +E LD   V      G  ++ +  
Sbjct: 204 MALSMSGNIYSWGKNEFGQLGLDHTESK---DSPSLIEALDNQKVEFLACGGSHTALLTQ 260

Query: 137 DGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTED-GKLFG 195
           DG L+ +G  K GQLG      E + P  V  LAG ++ +++ G  H LA   D GK+F 
Sbjct: 261 DGLLFTFGAGKHGQLGHNSTQNE-LRPCLVAELAGNRVTQIACGRWHTLAYVSDLGKVFS 319

Query: 196 WGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVS 243
           +G   +G++GN G   +  PL   +  SS  D +  S T EK   +++
Sbjct: 320 FGSGKEGQLGNGGTRDQLIPLPMKV--SSNEDLKFESHTSEKELIMIA 365



 Score = 78.6 bits (192), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 53/151 (35%), Positives = 81/151 (53%), Gaps = 5/151 (3%)

Query: 66  VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAF 125
           +  ++ G YHSLA++  G ++AWG+N   QLG G      T   P+ VE L  + +    
Sbjct: 140 IIQITCGDYHSLALSKGGELFAWGQNLHGQLGVGRKFPSTT--TPQIVEHLSGIPLAQIS 197

Query: 126 ASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAI-VPSRVEALAGEKIVKVSFGWGHA 184
           A    S A+   G+++ WGK++ GQLGL  D TE+   PS +EAL  +K+  ++ G  H 
Sbjct: 198 AGEAHSMALSMSGNIYSWGKNEFGQLGL--DHTESKDSPSLIEALDNQKVEFLACGGSHT 255

Query: 185 LAQTEDGKLFGWGYSADGRIGNLGKALESSP 215
              T+DG LF +G    G++G+     E  P
Sbjct: 256 ALLTQDGLLFTFGAGKHGQLGHNSTQNELRP 286



 Score = 45.1 bits (105), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 36/120 (30%), Positives = 61/120 (50%), Gaps = 16/120 (13%)

Query: 260 LVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFH----PV 315
           +++  +++ I CG  HSL L + G L + G N++GQLG  ++        I  H    P+
Sbjct: 134 ILQEKKIIQITCGDYHSLALSKGGELFAWGQNLHGQLGVGRKFPSTTTPQIVEHLSGIPL 193

Query: 316 S-ISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLG--RMGPDNVPLVVEGLEGES 372
           + IS+G  HS+A+      +++G    I SWG N   QLG       + P ++E L+ + 
Sbjct: 194 AQISAGEAHSMAL------SMSG---NIYSWGKNEFGQLGLDHTESKDSPSLIEALDNQK 244



 Score = 43.5 bits (101), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 42/150 (28%), Positives = 74/150 (49%), Gaps = 20/150 (13%)

Query: 165 RVEALAGEK-IVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLD------ 217
           R E++  EK I++++ G  H+LA ++ G+LF WG +  G++G +G+   S+         
Sbjct: 130 RFESILQEKKIIQITCGDYHSLALSKGGELFAWGQNLHGQLG-VGRKFPSTTTPQIVEHL 188

Query: 218 SNIDRSSESDQEISSSTIEKAQKLVSEGME----------KEKYMPIIWEPFLVEGVEVV 267
           S I  +  S  E  S  +  +  + S G            + K  P + E    + VE  
Sbjct: 189 SGIPLAQISAGEAHSMALSMSGNIYSWGKNEFGQLGLDHTESKDSPSLIEALDNQKVEF- 247

Query: 268 DIACGFDHSLVLGRNGVLLSCGSNVYGQLG 297
            +ACG  H+ +L ++G+L + G+  +GQLG
Sbjct: 248 -LACGGSHTALLTQDGLLFTFGAGKHGQLG 276


>gi|390353202|ref|XP_789385.3| PREDICTED: probable E3 ubiquitin-protein ligase HERC4-like
           [Strongylocentrotus purpuratus]
          Length = 1070

 Score = 87.4 bits (215), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 75/250 (30%), Positives = 115/250 (46%), Gaps = 22/250 (8%)

Query: 66  VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAF 125
           +T VS G+ H+LAVT+ G V  WGRN+  Q G    +S      P+ ++ L    V    
Sbjct: 90  ITQVSCGNDHTLAVTDRGQVLGWGRNDRGQCGLSTGDSEDK-RKPRFLKSLSSCQVAQVA 148

Query: 126 ASGVVSSAIGDDGSLWVWGKSKRGQLGLGKD--ITEAIVPSRVEALAGEKIVKVSFGWGH 183
              + S A+  DG ++ WG +  GQLG+G          P ++ +L G  I +++ G  H
Sbjct: 149 CGSMHSMALTRDGRIFAWGDNSFGQLGIGAPGRTLYRDHPQQLSSLPGVPIRRLACGGWH 208

Query: 184 ALAQTEDGKLFGWGYSADGRIGNLGKA---LESSPLDS----NIDRSSESDQEISSSTIE 236
           + A +  G +FGWG +  G++G LG     +  +PL +     +   +      +  T  
Sbjct: 209 SFALSVSGAVFGWGKNNCGQLG-LGTTEDRVSPTPLKNLKTKQVKYIACGQNYTAILTAS 267

Query: 237 KAQKLVSEGMEKE--------KYMPIIWEPFLVEGVEVVDIACGFDHSLVL-GRNGVLLS 287
               L  +G E +        +  P   + FL  G E+  +ACG  H+LVL GR G   S
Sbjct: 268 GGLFLFGQGSEGQLGHGSHSNEVNPRSVQGFL--GSEITQVACGRQHTLVLEGRTGRFFS 325

Query: 288 CGSNVYGQLG 297
            G    GQLG
Sbjct: 326 LGQGSKGQLG 335



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 71/277 (25%), Positives = 116/277 (41%), Gaps = 55/277 (19%)

Query: 28  AVVSFGDGSQGALGLPTSLTGVGGDA---YEPTRVPGLP-SDVTSVSAGHYHSLAVTNNG 83
           +V S+G    G LG+    +G+G D      P  VP L    +  +S G  H+  +  +G
Sbjct: 2   SVFSWGCTQDGQLGI----SGLGDDVPSLSSPREVPALAGKQIREISCGLRHTCVLLRDG 57

Query: 84  AVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVW 143
            V   G N+  QLG+    S         V   + + +         + A+ D G +  W
Sbjct: 58  TVMMCGANDRGQLGQDRPGSELA-----HVPATETLVITQVSCGNDHTLAVTDRGQVLGW 112

Query: 144 GKSKRGQLGLGK-DITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADG 202
           G++ RGQ GL   D  +   P  +++L+  ++ +V+ G  H++A T DG++F WG ++ G
Sbjct: 113 GRNDRGQCGLSTGDSEDKRKPRFLKSLSSCQVAQVACGSMHSMALTRDGRIFAWGDNSFG 172

Query: 203 R--IGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFL 260
           +  IG  G+ L             +  Q++SS                            
Sbjct: 173 QLGIGAPGRTL-----------YRDHPQQLSS---------------------------- 193

Query: 261 VEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLG 297
           + GV +  +ACG  HS  L  +G +   G N  GQLG
Sbjct: 194 LPGVPIRRLACGGWHSFALSVSGAVFGWGKNNCGQLG 230



 Score = 64.7 bits (156), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 67/244 (27%), Positives = 105/244 (43%), Gaps = 43/244 (17%)

Query: 139 SLWVWGKSKRGQLG---LGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFG 195
           S++ WG ++ GQLG   LG D+     P  V ALAG++I ++S G  H      DG +  
Sbjct: 2   SVFSWGCTQDGQLGISGLGDDVPSLSSPREVPALAGKQIREISCGLRHTCVLLRDGTVMM 61

Query: 196 WGYSADGRIGN--LGKALESSPLDSNI---DRSSESDQEISSSTI---------EKAQKL 241
            G +  G++G    G  L   P    +     S  +D  ++ +           ++ Q  
Sbjct: 62  CGANDRGQLGQDRPGSELAHVPATETLVITQVSCGNDHTLAVTDRGQVLGWGRNDRGQCG 121

Query: 242 VSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQ 301
           +S G  ++K  P   +   +   +V  +ACG  HS+ L R+G + + G N +GQLG    
Sbjct: 122 LSTGDSEDKRKPRFLKS--LSSCQVAQVACGSMHSMALTRDGRIFAWGDNSFGQLGIGAP 179

Query: 302 DMGMFPVDINFHPVSISSGLG-----------HSLAICEVRSSNVTGGARGIVSWGWNRS 350
              ++      HP  +SS  G           HS A+      +V+G   G   WG N  
Sbjct: 180 GRTLY----RDHPQQLSSLPGVPIRRLACGGWHSFAL------SVSGAVFG---WGKNNC 226

Query: 351 SQLG 354
            QLG
Sbjct: 227 GQLG 230



 Score = 43.5 bits (101), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 41/144 (28%), Positives = 69/144 (47%), Gaps = 13/144 (9%)

Query: 20  FMRSASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPS-DVTSVSAGHYHSLA 78
           F  S SG AV  +G  + G LGL     G   D   PT +  L +  V  ++ G  ++  
Sbjct: 210 FALSVSG-AVFGWGKNNCGQLGL-----GTTEDRVSPTPLKNLKTKQVKYIACGQNYTAI 263

Query: 79  VTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAI--GD 136
           +T +G ++ +G+ +E QLG G   S +   +P+ V+G     +    A G   + +  G 
Sbjct: 264 LTASGGLFLFGQGSEGQLGHG---SHSNEVNPRSVQGFLGSEI-TQVACGRQHTLVLEGR 319

Query: 137 DGSLWVWGKSKRGQLGLGKDITEA 160
            G  +  G+  +GQLGL  D +++
Sbjct: 320 TGRFFSLGQGSKGQLGLDNDSSKS 343


>gi|374993251|ref|YP_004968750.1| cell wall binding protein [Desulfosporosinus orientis DSM 765]
 gi|357211617|gb|AET66235.1| putative cell wall binding protein [Desulfosporosinus orientis DSM
           765]
          Length = 731

 Score = 87.4 bits (215), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 82/275 (29%), Positives = 141/275 (51%), Gaps = 26/275 (9%)

Query: 69  VSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASG 128
           +SAG   SLAV  +G VWAWG N+E QLG+G +++    + P +V+GL   +V +  A G
Sbjct: 50  LSAGLNFSLAVDADGNVWAWGDNSEGQLGQGDVDTNPVVS-PVKVKGL--TDVISVSAGG 106

Query: 129 VVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQT 188
           V + A+  DG++W WG ++  QLG+ +  +   +P ++++L  + IV ++ G    LA  
Sbjct: 107 VHALALKADGTVWAWGNNEYDQLGVEQS-SPITLPRQIDSL--QNIVGIAAGLESNLALD 163

Query: 189 EDGKLFGWGYSADGRIGNLGKALESSP-------------LDSNIDRSSESDQEISSSTI 235
             G+++ WG +   ++ N      S P             L S    + ++D  + +   
Sbjct: 164 NQGQVWAWGGNEYQQVNNTDDLKISDPQIVNNLSGVVKIALGSAWSLALKNDGTVWTWGA 223

Query: 236 EKAQKLVSEGMEKEKYMPIIWEPFLVEGV-EVVDIACGFDHSLVLGRNGVLLSCGSNVYG 294
           +K    V  G + ++ +    +   ++G+  VV I+ GF HSL L  +G +   GSN   
Sbjct: 224 QK----VLFGTDGQEGISDYTDLTQIKGLANVVSISAGFSHSLALKNDGTVWGWGSNEVL 279

Query: 295 QLGREKQDMGMFPVDINF--HPVSISSGLGHSLAI 327
           QLG  +Q     PV I+   + VS+S+G   S+A+
Sbjct: 280 QLGNTEQPWFDSPVQISSINNAVSVSAGAYLSMAL 314



 Score = 72.0 bits (175), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 59/158 (37%), Positives = 87/158 (55%), Gaps = 14/158 (8%)

Query: 52  DAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWND-P 110
           D  + T++ GL ++V S+SAG  HSLA+ N+G VW WG N  +QLG     +   W D P
Sbjct: 238 DYTDLTQIKGL-ANVVSISAGFSHSLALKNDGTVWGWGSNEVLQLGN----TEQPWFDSP 292

Query: 111 KRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALA 170
            ++  ++  N  +  A   +S A+G DGS+W  G +  GQLG G   +   +P+    L 
Sbjct: 293 VQISSIN--NAVSVSAGAYLSMALGKDGSVWTLGANGGGQLGSGSSSSN--LPASAAPLK 348

Query: 171 GEKIVKV---SFGWGHALAQTEDGKLFGWGYSADGRIG 205
              I KV   S G+G ALA T  G ++GWG +  G++G
Sbjct: 349 AANISKVSAISAGYGFALAGTA-GSVWGWGDNTKGQLG 385


>gi|449508251|ref|XP_004163263.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC4-like, partial
           [Cucumis sativus]
          Length = 386

 Score = 87.4 bits (215), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 77/266 (28%), Positives = 124/266 (46%), Gaps = 38/266 (14%)

Query: 69  VSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASG 128
           ++ G  H+L +T +G V+A G NN  QLG    +  +T     R+   + +++ A +   
Sbjct: 118 IACGGAHTLFLTESGRVYATGLNNFGQLGISDEKRFSTEPVEVRIPK-EAMHISAGYNHS 176

Query: 129 VVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAI-VPSRVEALAGEKIVKVSFGWGHALAQ 187
            V +A   DG L++WG +  GQLGLGK   +A+ +P++V++L G  I + + G  H++A 
Sbjct: 177 CVVTA---DGELYMWGVNSNGQLGLGKKSAKAVHLPTKVDSLDGIVIKRAALGSDHSIAV 233

Query: 188 TEDGKLFGWGYSADGRIGNLGKALESSPL---DSNIDRSSESDQEISSSTI--------- 235
            + G++F WG   DGR G LG   ES+ L    S  + +    +E+    +         
Sbjct: 234 ADGGEVFSWG---DGRSGRLGHGHESTFLGFLKSTSEHTPRLIKELEGIKVKHVAAGMLH 290

Query: 236 --------------EKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGR 281
                         E+A   VS G   +   P +    L    +  ++ACG  H+ VL +
Sbjct: 291 SACVDENGAVYIFGERATNRVSFGEANKATTPSLISTLL----DCEEVACGGYHTCVLTK 346

Query: 282 NGVLLSCGSNVYGQLGREKQDMGMFP 307
            G L S GSN  G LG     +   P
Sbjct: 347 GGDLYSWGSNENGCLGNGSTSVSHLP 372



 Score = 45.1 bits (105), Expect = 0.054,   Method: Compositional matrix adjust.
 Identities = 47/153 (30%), Positives = 66/153 (43%), Gaps = 19/153 (12%)

Query: 24  ASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSD-----VTSVSAGHYHSLA 78
           A G  V S+GDG  G LG     T +G         P L  +     V  V+AG  HS  
Sbjct: 234 ADGGEVFSWGDGRSGRLGHGHESTFLGFLKSTSEHTPRLIKELEGIKVKHVAAGMLHSAC 293

Query: 79  VTNNGAVWAWGR--NNEVQLGRGALESRATWNDPKRVEGLDQVN--VCAAFASGVVSSAI 134
           V  NGAV+ +G    N V  G     ++AT   P  +  L       C  + + V++   
Sbjct: 294 VDENGAVYIFGERATNRVSFGEA---NKAT--TPSLISTLLDCEEVACGGYHTCVLTKG- 347

Query: 135 GDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVE 167
              G L+ WG ++ G LG G   + + +P RVE
Sbjct: 348 ---GDLYSWGSNENGCLGNG-STSVSHLPERVE 376



 Score = 39.7 bits (91), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 54/243 (22%), Positives = 92/243 (37%), Gaps = 62/243 (25%)

Query: 142 VWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSAD 201
           VWG    G+LGLG ++     P    +   E +  ++ G  H L  TE G+++  G +  
Sbjct: 84  VWGNGDFGRLGLG-NLDSQWSPVPCSSFDREMLKGIACGGAHTLFLTESGRVYATGLNNF 142

Query: 202 GRIG-NLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFL 260
           G++G +  K   + P++  I +                                      
Sbjct: 143 GQLGISDEKRFSTEPVEVRIPK-------------------------------------- 164

Query: 261 VEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFHPVSISSG 320
               E + I+ G++HS V+  +G L   G N  GQLG  K+      +     P  + S 
Sbjct: 165 ----EAMHISAGYNHSCVVTADGELYMWGVNSNGQLGLGKKSAKAVHL-----PTKVDSL 215

Query: 321 LGHSLAICEVRSSNVTGGARG--IVSWGWNRSSQLG-----------RMGPDNVPLVVEG 367
            G  +    + S +    A G  + SWG  RS +LG           +   ++ P +++ 
Sbjct: 216 DGIVIKRAALGSDHSIAVADGGEVFSWGDGRSGRLGHGHESTFLGFLKSTSEHTPRLIKE 275

Query: 368 LEG 370
           LEG
Sbjct: 276 LEG 278


>gi|330836411|ref|YP_004411052.1| chromosome condensation regulator RCC1 [Sphaerochaeta coccoides DSM
           17374]
 gi|329748314|gb|AEC01670.1| regulator of chromosome condensation RCC1 [Sphaerochaeta coccoides
           DSM 17374]
          Length = 768

 Score = 87.4 bits (215), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 76/293 (25%), Positives = 125/293 (42%), Gaps = 53/293 (18%)

Query: 32  FGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRN 91
            GDG+ G     ++   V  DA       G  +DV +VSA + H+L + N+G +WA GRN
Sbjct: 517 LGDGTSGDSNNKSTPVQVKEDA------GGFMTDVAAVSARYNHTLILKNDGTLWATGRN 570

Query: 92  NEVQLGRGALESRATWNDPKRVEGLDQV-----NVCAAFASGVVSSAIGDDGSLWVWGKS 146
           N  QLG G        + P +V+    +     +V A FA    +  + +DG+LW  G +
Sbjct: 571 NYGQLGDGTSGDPNNKSTPVQVKDDTDISGFMTDVAAVFAGYAHTMILKNDGTLWATGYN 630

Query: 147 KRGQLGLGKD--ITEAIVPSRVEALAGEK-----IVKVSFGWGHALAQTEDGKLFGWGYS 199
           + GQLG+G    +     P +V+A          + +VS G  H +   +DG L+  GY+
Sbjct: 631 EYGQLGVGTSGIVNNKSTPVQVKASTAANDFMIDVKEVSAGLNHTMIVKKDGTLWATGYN 690

Query: 200 ADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPF 259
             G++G+      ++P+                         V +  +   +M       
Sbjct: 691 YQGQLGDGTGITRTTPV------------------------RVKDTTDDSGFM------- 719

Query: 260 LVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINF 312
                +V  ++ G  H+++L ++G L   G N YGQLG         PV + F
Sbjct: 720 ----TDVAAVSVGEYHTIILKKDGTLWGTGYNYYGQLGDNTIVNTNTPVQVIF 768



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 65/244 (26%), Positives = 113/244 (46%), Gaps = 42/244 (17%)

Query: 64  SDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVE---GLDQVN 120
           +DV +VSAG  H++ +  +G +WA GRNN  QLG G        + P +V+   G    +
Sbjct: 485 TDVAAVSAGREHTMILKKDGTLWATGRNNYGQLGDGTSGDSNNKSTPVQVKEDAGGFMTD 544

Query: 121 VCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGK--DITEAIVPSRVE---ALAG--EK 173
           V A  A    +  + +DG+LW  G++  GQLG G   D      P +V+    ++G    
Sbjct: 545 VAAVSARYNHTLILKNDGTLWATGRNNYGQLGDGTSGDPNNKSTPVQVKDDTDISGFMTD 604

Query: 174 IVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSS 233
           +  V  G+ H +    DG L+  GY+  G++G +G         S I  +  +  ++ +S
Sbjct: 605 VAAVFAGYAHTMILKNDGTLWATGYNEYGQLG-VGT--------SGIVNNKSTPVQVKAS 655

Query: 234 TIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVY 293
           T                +M           ++V +++ G +H++++ ++G L + G N  
Sbjct: 656 T------------AANDFM-----------IDVKEVSAGLNHTMIVKKDGTLWATGYNYQ 692

Query: 294 GQLG 297
           GQLG
Sbjct: 693 GQLG 696



 Score = 68.9 bits (167), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 67/247 (27%), Positives = 105/247 (42%), Gaps = 46/247 (18%)

Query: 60  PGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRAT----WNDPKRVEG 115
           P +   V SVSAG  H++ +  +G +WA GRNN  Q G G   +R+T    W+       
Sbjct: 367 PAVKLGVKSVSAGGDHTMILKTDGTLWATGRNNYGQQGVGNTTNRSTPVQVWDSTN--GS 424

Query: 116 LDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAG---- 171
           +    V A  A G  +  +  DG+LW  G++  GQLG G        P RV+A       
Sbjct: 425 VKMTGVKAVSAGGDHTMILKKDGTLWATGQNTYGQLGDGTTY-RRTTPVRVKASTTPNDF 483

Query: 172 -EKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEI 230
              +  VS G  H +   +DG L+  G +  G++G      + +  DSN       ++  
Sbjct: 484 MTDVAAVSAGREHTMILKKDGTLWATGRNNYGQLG------DGTSGDSN-------NKST 530

Query: 231 SSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGS 290
                E A   ++                     +V  ++  ++H+L+L  +G L + G 
Sbjct: 531 PVQVKEDAGGFMT---------------------DVAAVSARYNHTLILKNDGTLWATGR 569

Query: 291 NVYGQLG 297
           N YGQLG
Sbjct: 570 NNYGQLG 576



 Score = 68.6 bits (166), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 60/214 (28%), Positives = 97/214 (45%), Gaps = 21/214 (9%)

Query: 6   SVVHNHVNVLTSRIFMRSASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSD 65
           S  +NH  +L +   + +         GDG+ G     ++   V  D    T + G  +D
Sbjct: 549 SARYNHTLILKNDGTLWATGRNNYGQLGDGTSGDPNNKSTPVQVKDD----TDISGFMTD 604

Query: 66  VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEG--------LD 117
           V +V AG+ H++ + N+G +WA G N   QLG G        + P +V+         +D
Sbjct: 605 VAAVFAGYAHTMILKNDGTLWATGYNEYGQLGVGTSGIVNNKSTPVQVKASTAANDFMID 664

Query: 118 QVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGE----- 172
              V A     ++   +  DG+LW  G + +GQLG G  IT    P RV+    +     
Sbjct: 665 VKEVSAGLNHTMI---VKKDGTLWATGYNYQGQLGDGTGITRT-TPVRVKDTTDDSGFMT 720

Query: 173 KIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGN 206
            +  VS G  H +   +DG L+G GY+  G++G+
Sbjct: 721 DVAAVSVGEYHTIILKKDGTLWGTGYNYYGQLGD 754


>gi|256077780|ref|XP_002575178.1| ubiquitin ligase [Schistosoma mansoni]
 gi|360043621|emb|CCD81167.1| putative hect E3 ubiquitin ligase [Schistosoma mansoni]
          Length = 1175

 Score = 87.4 bits (215), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 73/271 (26%), Positives = 129/271 (47%), Gaps = 17/271 (6%)

Query: 66  VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAF 125
           + SV+ G YH+ A+T NG ++ WG N+  QLGR   ++       K V  L    V    
Sbjct: 94  IISVACGAYHNAAITYNGLLFTWGCNSNGQLGREGDDTGV-----KLVRALSDHKVVQVS 148

Query: 126 ASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAI-VPSRVEALAGEKIVKVSFGWGHA 184
                +  + D   ++ +G + +GQLGLG    +++ +P ++  L+G  + ++  G  H+
Sbjct: 149 LGVEHTLVLTDTARVFAFGSNLKGQLGLGYSSEQSVSIPQQILCLSGLPVRRIVAGGWHS 208

Query: 185 LAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSE 244
              T  G L+ WG +  G++G       SSP D   + + +    + S++++  Q     
Sbjct: 209 FVLTVSGSLYAWGSNNYGQLG--LSYFGSSPNDHQNELTLKCG-SVGSTSVDDEQSKNRP 265

Query: 245 GMEKEKYMPIIWEPFLVE---GVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQ 301
               +  +  +  P  V+   G EVV +ACG  H++ L R+G + + G+  YGQLG  + 
Sbjct: 266 FSPLDTSLSNVSIPTFVKTLRGCEVVYLACGETHTVALTRDGGVFTFGAGRYGQLGHNES 325

Query: 302 DMGM-FPVDINFHP----VSISSGLGHSLAI 327
            +G+  P  I          I+ G  H+LA+
Sbjct: 326 TIGISVPRKITEFMGNVVTQIACGRFHTLAL 356



 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 76/282 (26%), Positives = 124/282 (43%), Gaps = 58/282 (20%)

Query: 21  MRSASGTAVVSFGDGSQGALGLPTSLTGVGGDAYE-----PTRVPGLPSDVTSVSAGHYH 75
           M S++   + ++G   +G L L  +      DAY+        V  LP+ +  ++ G+ H
Sbjct: 1   MVSSATEELFAWGSCEEGQLTLDKN------DAYQILIPKALDVRNLPT-LIQITCGYTH 53

Query: 76  SLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIG 135
           ++ +T +G V++ G N   QLG G      +     +V  L+   + +       ++AI 
Sbjct: 54  TVFLTIDGEVYSCGCNEFQQLGHGQ-----SGGQLAKVVALEHYRIISVACGAYHNAAIT 108

Query: 136 DDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFG 195
            +G L+ WG +  GQLG   D T   +   V AL+  K+V+VS G  H L  T+  ++F 
Sbjct: 109 YNGLLFTWGCNSNGQLGREGDDTGVKL---VRALSDHKVVQVSLGVEHTLVLTDTARVFA 165

Query: 196 WGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPII 255
           +G +  G++G LG +               S+Q +S                      I 
Sbjct: 166 FGSNLKGQLG-LGYS---------------SEQSVS----------------------IP 187

Query: 256 WEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLG 297
            +   + G+ V  I  G  HS VL  +G L + GSN YGQLG
Sbjct: 188 QQILCLSGLPVRRIVAGGWHSFVLTVSGSLYAWGSNNYGQLG 229



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 56/229 (24%), Positives = 102/229 (44%), Gaps = 57/229 (24%)

Query: 129 VVSSAIGDDGSLWVWGKSKRGQLGLGK-DITEAIVPSRVEALAGEKIVKVSFGWGHALAQ 187
           +VSSA  +   L+ WG  + GQL L K D  + ++P  ++      +++++ G+ H +  
Sbjct: 1   MVSSATEE---LFAWGSCEEGQLTLDKNDAYQILIPKALDVRNLPTLIQITCGYTHTVFL 57

Query: 188 TEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGME 247
           T DG+++  G +   ++G+                  +S  +++        K+V+    
Sbjct: 58  TIDGEVYSCGCNEFQQLGH-----------------GQSGGQLA--------KVVA---- 88

Query: 248 KEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFP 307
                        +E   ++ +ACG  H+  +  NG+L + G N  GQLGRE  D G+  
Sbjct: 89  -------------LEHYRIISVACGAYHNAAITYNGLLFTWGCNSNGQLGREGDDTGVKL 135

Query: 308 VDI--NFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLG 354
           V    +   V +S G+ H+L +        T  AR + ++G N   QLG
Sbjct: 136 VRALSDHKVVQVSLGVEHTLVL--------TDTAR-VFAFGSNLKGQLG 175



 Score = 55.8 bits (133), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 51/215 (23%), Positives = 84/215 (39%), Gaps = 40/215 (18%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAW 88
           V +FG   +G LGL  S         +   + GLP  V  + AG +HS  +T +G+++AW
Sbjct: 163 VFAFGSNLKGQLGLGYSSEQSVSIPQQILCLSGLP--VRRIVAGGWHSFVLTVSGSLYAW 220

Query: 89  GRNNEVQLGRGAL-------------------------------------ESRATWNDPK 111
           G NN  QLG                                          S +  + P 
Sbjct: 221 GSNNYGQLGLSYFGSSPNDHQNELTLKCGSVGSTSVDDEQSKNRPFSPLDTSLSNVSIPT 280

Query: 112 RVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAG 171
            V+ L    V         + A+  DG ++ +G  + GQLG  +      VP ++    G
Sbjct: 281 FVKTLRGCEVVYLACGETHTVALTRDGGVFTFGAGRYGQLGHNESTIGISVPRKITEFMG 340

Query: 172 EKIVKVSFGWGHALAQT-EDGKLFGWGYSADGRIG 205
             + +++ G  H LA   + G+LF +G   + ++G
Sbjct: 341 NVVTQIACGRFHTLALVPKTGRLFAFGQGTNAQLG 375



 Score = 44.7 bits (104), Expect = 0.068,   Method: Compositional matrix adjust.
 Identities = 28/96 (29%), Positives = 47/96 (48%), Gaps = 11/96 (11%)

Query: 266 VVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQ--DMGMFPVDINFHPVSISSGLGH 323
           ++ I CG+ H++ L  +G + SCG N + QLG  +    +       ++  +S++ G  H
Sbjct: 44  LIQITCGYTHTVFLTIDGEVYSCGCNEFQQLGHGQSGGQLAKVVALEHYRIISVACGAYH 103

Query: 324 SLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPD 359
           + AI          G   + +WG N + QLGR G D
Sbjct: 104 NAAI-------TYNGL--LFTWGCNSNGQLGREGDD 130



 Score = 38.1 bits (87), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 25/78 (32%), Positives = 40/78 (51%), Gaps = 6/78 (7%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDV-TSVSAGHYHSLA-VTNNGAVW 86
           V +FG G  G LG   S  G+      P ++     +V T ++ G +H+LA V   G ++
Sbjct: 309 VFTFGAGRYGQLGHNESTIGIS----VPRKITEFMGNVVTQIACGRFHTLALVPKTGRLF 364

Query: 87  AWGRNNEVQLGRGALESR 104
           A+G+    QLG G  ++R
Sbjct: 365 AFGQGTNAQLGMGDTKNR 382


>gi|402894100|ref|XP_003910210.1| PREDICTED: uncharacterized protein LOC101008912 [Papio anubis]
          Length = 878

 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 93/317 (29%), Positives = 137/317 (43%), Gaps = 51/317 (16%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAW 88
           V+S G  S G LG+P            P  +      V  ++AG  H+LA T +G V+ W
Sbjct: 549 VLSCGSNSFGQLGVPHG----PRRCVVPQAIELHKEKVVCIAAGLRHALAATASGIVFQW 604

Query: 89  GRNNEVQLGR-----GALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVW 143
           G       GR       L    T  +P RV GL+        A    S+++ D G ++VW
Sbjct: 605 G-TGLASCGRRLCPGQTLPLFFTAKEPSRVTGLENSKAMCVLAGADHSASLTDAGEVYVW 663

Query: 144 GKSKRGQLGLGKDITEAI---VPSRVEA--LAGEKIVKVSFGWGHALAQTEDGKLFGWGY 198
           G +K GQL      TEA    VP ++EA     EK+  V  GW H +AQTE GK+F WG 
Sbjct: 664 GSNKHGQLA-----TEAAFLPVPQKIEAHCFQNEKVTAVWSGWTHLVAQTETGKVFTWGR 718

Query: 199 SADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEP 258
           +  G++G   +  E   L+       + D  +  S +  +             MP     
Sbjct: 719 ADYGQLGRKLETYEGWKLE-------KQDSFLPCSRLLNS-------------MPSSLHC 758

Query: 259 FLVEGVEVVDIACGFDHSL-VLGRNGVLLSCGSNVYGQL--GREKQDMGMFPVD--INFH 313
                    +++CG +H+L V+G  GV  S G N +G    G E       PV   ++  
Sbjct: 759 L----TGATEVSCGSEHNLAVIG--GVCYSWGWNEHGMCGDGTETNIWAPKPVQALLSSS 812

Query: 314 PVSISSGLGHSLAICEV 330
            + +  G GHSLA+C++
Sbjct: 813 GLLVGCGAGHSLALCQL 829



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 98/376 (26%), Positives = 150/376 (39%), Gaps = 55/376 (14%)

Query: 33  GDGSQGALGLPTSLTGVGGDAYEPTRVPGL--PSDVTSVSAGHYHSLAVTNNGAVWAWGR 90
           G  S G LGL     G   D   P ++     P  V  ++ G  HS  VT+ G ++  G 
Sbjct: 448 GANSYGQLGL-----GHKEDVLLPQQLKDFCKPRSVRRITGGGGHSAVVTDVGDLFVCGL 502

Query: 91  NNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQ 150
           N + QLG G  E    +   K + G     V   +   ++   + ++G +   G +  GQ
Sbjct: 503 NKDGQLGLGHTEDIPYFTPCKSLFGCPIQQVACGWDFTII---LTENGQVLSCGSNSFGQ 559

Query: 151 LGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGW--GYSADGRIGNLG 208
           LG+       +VP  +E L  EK+V ++ G  HALA T  G +F W  G ++ GR    G
Sbjct: 560 LGVPHGPRRCVVPQAIE-LHKEKVVCIAAGLRHALAATASGIVFQWGTGLASCGRRLCPG 618

Query: 209 KALESSPLDSNIDRSS-----ESDQEIS-------SSTIEKAQKLVSEGMEKE------- 249
           + L   PL       S     E+ + +        S+++  A ++   G  K        
Sbjct: 619 QTL---PLFFTAKEPSRVTGLENSKAMCVLAGADHSASLTDAGEVYVWGSNKHGQLATEA 675

Query: 250 KYMPIIW--EPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGR--------- 298
            ++P+    E    +  +V  +  G+ H +     G + + G   YGQLGR         
Sbjct: 676 AFLPVPQKIEAHCFQNEKVTAVWSGWTHLVAQTETGKVFTWGRADYGQLGRKLETYEGWK 735

Query: 299 -EKQDMGMFPVD--INFHPVSISSGLGHSLAIC-EVRSSNVTGGARGIVSWGWNRSSQLG 354
            EKQD    P    +N  P S+    G +   C    +  V GG     SWGWN     G
Sbjct: 736 LEKQD-SFLPCSRLLNSMPSSLHCLTGATEVSCGSEHNLAVIGGV--CYSWGWNEHGMCG 792

Query: 355 RMGPDNV--PLVVEGL 368
                N+  P  V+ L
Sbjct: 793 DGTETNIWAPKPVQAL 808



 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 93/361 (25%), Positives = 149/361 (41%), Gaps = 58/361 (16%)

Query: 31  SFGDGSQGALGLPTSLTGVGGDAYEP-TRVPGLPSDVTSVSAGH---YHSLAVTNNGAVW 86
           SF D  +       ++    G  Y P TR   +  D  S+++      H L V ++    
Sbjct: 388 SFEDAKEKMREFTKTIKRPFGVKYNPYTRSIQILKDTKSITSAMNELQHDLDVVSDA--L 445

Query: 87  AWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDD-GSLWVWGK 145
           A G N+  QLG G  E       P++++   +         G   SA+  D G L+V G 
Sbjct: 446 AKGANSYGQLGLGHKEDVLL---PQQLKDFCKPRSVRRITGGGGHSAVVTDVGDLFVCGL 502

Query: 146 SKRGQLGLGKDITEAI-VPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRI 204
           +K GQLGLG   TE I   +  ++L G  I +V+ GW   +  TE+G++   G ++ G++
Sbjct: 503 NKDGQLGLGH--TEDIPYFTPCKSLFGCPIQQVACGWDFTIILTENGQVLSCGSNSFGQL 560

Query: 205 GNLGKALESSPLDSNIDRSSESDQE---ISSSTIEKAQKLVSEGMEKE------------ 249
           G     +   P    + ++ E  +E     ++ +  A    + G+  +            
Sbjct: 561 G-----VPHGPRRCVVPQAIELHKEKVVCIAAGLRHALAATASGIVFQWGTGLASCGRRL 615

Query: 250 ---KYMPIIW---EPFLVEGVEVVDIAC---GFDHSLVLGRNGVLLSCGSNVYGQLGREK 300
              + +P+ +   EP  V G+E     C   G DHS  L   G +   GSN +GQL  E 
Sbjct: 616 CPGQTLPLFFTAKEPSRVTGLENSKAMCVLAGADHSASLTDAGEVYVWGSNKHGQLATEA 675

Query: 301 QDMGMFPVDINFHP------VSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLG 354
             + + P  I  H        ++ SG  H +A  E      TG    + +WG     QLG
Sbjct: 676 AFLPV-PQKIEAHCFQNEKVTAVWSGWTHLVAQTE------TG---KVFTWGRADYGQLG 725

Query: 355 R 355
           R
Sbjct: 726 R 726


>gi|409911788|ref|YP_006890253.1| lipoprotein [Geobacter sulfurreducens KN400]
 gi|298505363|gb|ADI84086.1| ATS1 domain repeat protein [Geobacter sulfurreducens KN400]
          Length = 2082

 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 104/364 (28%), Positives = 150/364 (41%), Gaps = 66/364 (18%)

Query: 32  FGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRN 91
            G+G+ GA+  PT L+  G  A+              V  G   SL + +NG +WAWG N
Sbjct: 379 LGNGTFGAVTAPTVLS-AGASAW------------LGVEPGGAFSLGLRSNGTLWAWGGN 425

Query: 92  NEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQL 151
              QLG G     A    P  V G D  N          S A+  DG+LW WG +  GQL
Sbjct: 426 ASGQLGDGTTTPSAI---PVPVVG-DAGNWRTTATGTAHSVAVRADGTLWAWGDNSSGQL 481

Query: 152 GLGKDITEAIVPSRV----EALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGN- 206
           G+G  +  A  P ++     A AG     V+ G  H +    DG L+ WG +  G++G+ 
Sbjct: 482 GIGSTV-AASTPQQITVTNPASAGNDWAAVAAGEAHTIGLKADGTLWAWGDNTFGQLGDG 540

Query: 207 LGKALESSPLD------SNIDR-------------SSESDQEI----SSSTIEKAQKLVS 243
            G +  ++P+        N DR             + ++D  I     +S ++       
Sbjct: 541 TGTSNRTTPVQIVTGNPGNFDRNWVAVAAGGVFSLALQADGTIWTWGDNSLLQLGTDPAV 600

Query: 244 EGMEKEKYMP----IIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGRE 299
                ++ +P    +   P        V IA G DH L L  +G L + G+N  GQLG  
Sbjct: 601 LAPATQRNVPAQLAVASPPSTAFNSSWVAIAAGQDHGLALQADGTLWAWGANSVGQLGNG 660

Query: 300 KQDMGMFPVDI----NFHPVSISSGLGHSLAICEVRSSNVTGGARGIV-SWGWNRSSQLG 354
                  PV +        VS+++G  HSLA          G + G + +WG N S QLG
Sbjct: 661 VTTATFTPVQVINAEGVPYVSLAAGTSHSLA----------GRSDGTLWAWGNNTSGQLG 710

Query: 355 RMGP 358
             GP
Sbjct: 711 -TGP 713



 Score = 85.5 bits (210), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 103/333 (30%), Positives = 157/333 (47%), Gaps = 43/333 (12%)

Query: 48  GVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATW 107
           G G +   P +VPG      +V+AG  HSL +  +G++WAWG N   QLG+  +  +   
Sbjct: 67  GTGINRTSPVQVPG---TWKTVAAGTTHSLGIKADGSLWAWGSNLFGQLGQPLVNGQLAT 123

Query: 108 N--DPKRV-EGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPS 164
           N   P R+  G D V V A     + S  +  DG+LW WG +  G+LG G  ++    P 
Sbjct: 124 NKFSPIRIGTGNDWVAVSAG---ELTSFGLKGDGTLWSWGNNLFGELGDGTTVSRP-QPV 179

Query: 165 RVEA--LAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKAL--ESSPLDSNI 220
           +V A  L+  + V V+ G  HALA   DG L+ WG +  G++G  G  +    +PL    
Sbjct: 180 QVVADPLSNGRYVAVAAGGEHALALQADGTLWAWGANLTGQLGTGGTGILPNPTPLKIGT 239

Query: 221 DR--SSESDQEISSSTIEKAQKLVSEG------MEKEKYMP--IIWEPFLV-EGVEVVDI 269
           DR  ++ S  E+ S  ++    L S G      +     +P   +  P  V  G + V I
Sbjct: 240 DRDWTAISAGEMHSVALKADGSLWSWGQNLFGELGNGVALPGANVTTPTRVGTGSDWVAI 299

Query: 270 ACGFDHSLVLGRNGVLLSCGSNVYGQLG------REKQDMGMFPVDINFHPVSISSGLGH 323
           A G  H++ L RNG + + G+N  G +G      R    + + PV +  + V+I++G G 
Sbjct: 300 AAGALHTVALHRNGTVSAWGNNAQGAVGDGTVANRSTPTLIVAPVTL-VNNVAIAAGTGV 358

Query: 324 SLAICEVRSSNVTGGARGIV-SWGWNRSSQLGR 355
           S ++           A G V  WG N + QLG 
Sbjct: 359 SFSVL----------ANGTVFGWGGNGAGQLGN 381



 Score = 84.7 bits (208), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 95/356 (26%), Positives = 143/356 (40%), Gaps = 82/356 (23%)

Query: 31  SFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGR 90
           ++GD S G LG+ +++          T      +D  +V+AG  H++ +  +G +WAWG 
Sbjct: 472 AWGDNSSGQLGIGSTVAASTPQQITVTNPASAGNDWAAVAAGEAHTIGLKADGTLWAWGD 531

Query: 91  NNEVQLGRGALESRATWNDPKRV----EGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKS 146
           N   QLG G   S  T   P ++     G    N  A  A GV S A+  DG++W WG +
Sbjct: 532 NTFGQLGDGTGTSNRT--TPVQIVTGNPGNFDRNWVAVAAGGVFSLALQADGTIWTWGDN 589

Query: 147 KRGQLGLGKDI----TEAIVPSRVEALAGEKI------VKVSFGWGHALAQTEDGKLFGW 196
              QLG    +    T+  VP+++   +          V ++ G  H LA   DG L+ W
Sbjct: 590 SLLQLGTDPAVLAPATQRNVPAQLAVASPPSTAFNSSWVAIAAGQDHGLALQADGTLWAW 649

Query: 197 GYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIW 256
           G ++ G++GN                                      G+    + P+  
Sbjct: 650 GANSVGQLGN--------------------------------------GVTTATFTPV-- 669

Query: 257 EPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFH--- 313
           +    EGV  V +A G  HSL    +G L + G+N  GQLG         P++   H   
Sbjct: 670 QVINAEGVPYVSLAAGTSHSLAGRSDGTLWAWGNNTSGQLGTGPHPGDADPLNPQPHTVP 729

Query: 314 -------PVS-------ISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGR 355
                  PVS        ++G  HS A+     SN T     + +WG N S QLG 
Sbjct: 730 ARILTSNPVSAADDWLVATAGGSHSAAL----KSNGT-----LWTWGQNTSGQLGN 776



 Score = 77.0 bits (188), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 78/276 (28%), Positives = 110/276 (39%), Gaps = 61/276 (22%)

Query: 68  SVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCA---- 123
           +V+AG   SLA+  +G +W WG N+ +QLG           DP  +    Q NV A    
Sbjct: 566 AVAAGGVFSLALQADGTIWTWGDNSLLQLGT----------DPAVLAPATQRNVPAQLAV 615

Query: 124 ------AFASGVVSSAIGDD--------GSLWVWGKSKRGQLGLGKDITEAIVPSRVEAL 169
                 AF S  V+ A G D        G+LW WG +  GQLG G   T    P +V   
Sbjct: 616 ASPPSTAFNSSWVAIAAGQDHGLALQADGTLWAWGANSVGQLGNGV-TTATFTPVQVINA 674

Query: 170 AGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQE 229
            G   V ++ G  H+LA   DG L+ WG +  G++G      ++ PL  N    +   + 
Sbjct: 675 EGVPYVSLAAGTSHSLAGRSDGTLWAWGNNTSGQLGTGPHPGDADPL--NPQPHTVPARI 732

Query: 230 ISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCG 289
           ++S+ +  A                    +LV          G  HS  L  NG L + G
Sbjct: 733 LTSNPVSAADD------------------WLVA-------TAGGSHSAALKSNGTLWTWG 767

Query: 290 SNVYGQLGREKQDMGMFPVD-----INFHPVSISSG 320
            N  GQLG         P       I+  P S++ G
Sbjct: 768 QNTSGQLGNGTTTEADIPTALLEPRISVSPASLAFG 803



 Score = 62.8 bits (151), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 84/307 (27%), Positives = 133/307 (43%), Gaps = 37/307 (12%)

Query: 68  SVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVE-GLDQVNVCAAFA 126
           +V+AG  H+LA+  +G +WAWG N   QL            +P  ++ G D+ +  A  A
Sbjct: 193 AVAAGGEHALALQADGTLWAWGANLTGQL---GTGGTGILPNPTPLKIGTDR-DWTAISA 248

Query: 127 SGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALA 186
             + S A+  DGSLW WG++  G+LG G  +  A V +      G   V ++ G  H +A
Sbjct: 249 GEMHSVALKADGSLWSWGQNLFGELGNGVALPGANVTTPTRVGTGSDWVAIAAGALHTVA 308

Query: 187 QTEDGKLFGWGYSADGRIGNLGKALESSP--------LDSNIDRSSESDQEISSSTIEKA 238
              +G +  WG +A G +G+   A  S+P        L +N+  ++ +   +S S +   
Sbjct: 309 LHRNGTVSAWGNNAQGAVGDGTVANRSTPTLIVAPVTLVNNVAIAAGTG--VSFSVLANG 366

Query: 239 QKLVSEG-----MEKEKYMPIIWEPFLVEGVEV-VDIACGFDHSLVLGRNGVLLSCGSNV 292
                 G     +    +  +     L  G    + +  G   SL L  NG L + G N 
Sbjct: 367 TVFGWGGNGAGQLGNGTFGAVTAPTVLSAGASAWLGVEPGGAFSLGLRSNGTLWAWGGNA 426

Query: 293 YGQLGREKQDMGMFPVDI-----NFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGW 347
            GQLG         PV +     N+   + ++G  HS+A   VR+         + +WG 
Sbjct: 427 SGQLGDGTTTPSAIPVPVVGDAGNWR--TTATGTAHSVA---VRADGT------LWAWGD 475

Query: 348 NRSSQLG 354
           N S QLG
Sbjct: 476 NSSGQLG 482



 Score = 61.6 bits (148), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 73/254 (28%), Positives = 105/254 (41%), Gaps = 29/254 (11%)

Query: 64  SDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCA 123
           S V  V+AG  H L + ++G +WA G N   QLG G   +R +   P +V G        
Sbjct: 32  SAVPHVAAGGNHVLTLRSDGTLWAAGSNQFGQLGDGTGINRTS---PVQVPG-----TWK 83

Query: 124 AFASGVVSS-AIGDDGSLWVWGKSKRGQLGL----GKDITEAIVPSRVEALAGEKIVKVS 178
             A+G   S  I  DGSLW WG +  GQLG     G+  T    P R+    G   V VS
Sbjct: 84  TVAAGTTHSLGIKADGSLWAWGSNLFGQLGQPLVNGQLATNKFSPIRIG--TGNDWVAVS 141

Query: 179 FGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKA 238
            G   +     DG L+ WG +  G +G+        P+    D  S       ++  E A
Sbjct: 142 AGELTSFGLKGDGTLWSWGNNLFGELGDGTTVSRPQPVQVVADPLSNGRYVAVAAGGEHA 201

Query: 239 QKLVSEGM-----------EKEKYMPIIWEPFLVE---GVEVVDIACGFDHSLVLGRNGV 284
             L ++G                   I+  P  ++     +   I+ G  HS+ L  +G 
Sbjct: 202 LALQADGTLWAWGANLTGQLGTGGTGILPNPTPLKIGTDRDWTAISAGEMHSVALKADGS 261

Query: 285 LLSCGSNVYGQLGR 298
           L S G N++G+LG 
Sbjct: 262 LWSWGQNLFGELGN 275



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 74/279 (26%), Positives = 116/279 (41%), Gaps = 65/279 (23%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRV--PGLPSDVTSVSAGHYHSLAVTNNGAVW 86
           V ++G+ +QGA+G      G   +   PT +  P    +  +++AG   S +V  NG V+
Sbjct: 315 VSAWGNNAQGAVG-----DGTVANRSTPTLIVAPVTLVNNVAIAAGTGVSFSVLANGTVF 369

Query: 87  AWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFAS--------GVVSSAIGDDG 138
            WG N   QLG G   +            +    V +A AS        G  S  +  +G
Sbjct: 370 GWGGNGAGQLGNGTFGA------------VTAPTVLSAGASAWLGVEPGGAFSLGLRSNG 417

Query: 139 SLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGY 198
           +LW WG +  GQLG G     AI P  V   AG      + G  H++A   DG L+ WG 
Sbjct: 418 TLWAWGGNASGQLGDGTTTPSAI-PVPVVGDAGNWRTTAT-GTAHSVAVRADGTLWAWGD 475

Query: 199 SADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEP 258
           ++ G++G +G  + +S           + Q+I+ +    A                    
Sbjct: 476 NSSGQLG-IGSTVAAS-----------TPQQITVTNPASA-------------------- 503

Query: 259 FLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLG 297
               G +   +A G  H++ L  +G L + G N +GQLG
Sbjct: 504 ----GNDWAAVAAGEAHTIGLKADGTLWAWGDNTFGQLG 538



 Score = 58.9 bits (141), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 51/149 (34%), Positives = 75/149 (50%), Gaps = 21/149 (14%)

Query: 31  SFGDGSQGALGLPTSLTGVGGDAYEPTRV---PGLPSDVTSVSAGHYHSLAVTNNGAVWA 87
           ++G  S G LG      GV    + P +V    G+P    S++AG  HSLA  ++G +WA
Sbjct: 648 AWGANSVGQLG-----NGVTTATFTPVQVINAEGVP--YVSLAAGTSHSLAGRSDGTLWA 700

Query: 88  WGRNNEVQLGRGALESRATWNDPK------RVEGLDQVNVC----AAFASGVVSSAIGDD 137
           WG N   QLG G     A   +P+      R+   + V+       A A G  S+A+  +
Sbjct: 701 WGNNTSGQLGTGPHPGDADPLNPQPHTVPARILTSNPVSAADDWLVATAGGSHSAALKSN 760

Query: 138 GSLWVWGKSKRGQLGLGKDITEAIVPSRV 166
           G+LW WG++  GQLG G   TEA +P+ +
Sbjct: 761 GTLWTWGQNTSGQLGNGT-TTEADIPTAL 788



 Score = 37.7 bits (86), Expect = 9.1,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 42/90 (46%), Gaps = 9/90 (10%)

Query: 266 VVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFHPVSISSGLGHSL 325
           V  +A G +H L L  +G L + GSN +GQLG         PV +     ++++G  HSL
Sbjct: 34  VPHVAAGGNHVLTLRSDGTLWAAGSNQFGQLGDGTGINRTSPVQVPGTWKTVAAGTTHSL 93

Query: 326 AICEVRSSNVTGGARGIVSWGWNRSSQLGR 355
            I    S         + +WG N   QLG+
Sbjct: 94  GIKADGS---------LWAWGSNLFGQLGQ 114


>gi|418700078|ref|ZP_13261023.1| chromosome condensation regulator RCC1 repeat protein [Leptospira
           interrogans serovar Bataviae str. L1111]
 gi|410760950|gb|EKR27143.1| chromosome condensation regulator RCC1 repeat protein [Leptospira
           interrogans serovar Bataviae str. L1111]
          Length = 479

 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 88/295 (29%), Positives = 137/295 (46%), Gaps = 30/295 (10%)

Query: 29  VVSFGDGSQGALGLPTSLTGVG-----GDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNG 83
           V ++G  S+G LG+  + T        G+   PT +PG+ +D    + G  H+L + ++G
Sbjct: 172 VYTWGANSKGQLGIGNNNTDPARASDPGNRQPPTEIPGI-NDAVMGAYGFNHALVLKSDG 230

Query: 84  AVWAWGRNNEVQLGRGA--LESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLW 141
            V A+G+NN  QLG G   L   +  ++P  V  L   NV    A    S+A+ ++G ++
Sbjct: 231 TVVAFGQNNVGQLGNGENNLNRNSFSSNPVNVVQLR--NVIQVIAGSEHSAALTENGEVY 288

Query: 142 VWGKSKRGQLGLG---KDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGY 198
           +WG+++ G LG G      T   VP +VE L+  KI +++ G  H LA T DGK++ WG 
Sbjct: 289 IWGRNQYGNLGNGIISPANTVQSVPVKVEGLS--KIKQIANGRDHILALTSDGKIYSWGL 346

Query: 199 SADGRIGNLGKALESSPLDSNIDRSSESDQEI-----SSSTIEKAQKLVSEGME------ 247
           +A G++G  G              + +    I      S  I K  ++   G        
Sbjct: 347 NASGQLGIGGNGNPPPTPIPTQILNIQDVASIWAGGTQSFAILKNGEVKGWGANGNMASL 406

Query: 248 --KEKYMPIIWEPF-LVEGVE-VVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGR 298
              E     ++EP   V G++ VV   CG  H+  L  NG +   G N  G LGR
Sbjct: 407 ALGESNTQKVYEPNKAVVGIDNVVHFGCGATHNFALLGNGEIYGWGWNFKGSLGR 461



 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 82/315 (26%), Positives = 126/315 (40%), Gaps = 78/315 (24%)

Query: 67  TSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRG-----ALESRATWNDPKRVEGLDQVNV 121
           T +SAG  HS  + N G ++  GRNN  QLG G      +  R    DP R       ++
Sbjct: 102 TKLSAGGAHSGFLIN-GELYTVGRNNFGQLGTGISTGDGINDRIVKVDPIR-------DI 153

Query: 122 CAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSR----------VEALAG 171
            +   +   S AI  +G ++ WG + +GQLG+G + T+   P+R           E    
Sbjct: 154 FSIHFNQNNSMAISQNGRVYTWGANSKGQLGIGNNNTD---PARASDPGNRQPPTEIPGI 210

Query: 172 EKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEIS 231
              V  ++G+ HAL    DG +  +G +  G++GN          ++N++R+S S   ++
Sbjct: 211 NDAVMGAYGFNHALVLKSDGTVVAFGQNNVGQLGN---------GENNLNRNSFSSNPVN 261

Query: 232 SSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSN 291
                                       +V+   V+ +  G +HS  L  NG +   G N
Sbjct: 262 ----------------------------VVQLRNVIQVIAGSEHSAALTENGEVYIWGRN 293

Query: 292 VYGQLGR----EKQDMGMFPVDIN--FHPVSISSGLGHSLAICEVRSSNVTGGARGIVSW 345
            YG LG         +   PV +        I++G  H LA+              I SW
Sbjct: 294 QYGNLGNGIISPANTVQSVPVKVEGLSKIKQIANGRDHILALTSDGK---------IYSW 344

Query: 346 GWNRSSQLGRMGPDN 360
           G N S QLG  G  N
Sbjct: 345 GLNASGQLGIGGNGN 359



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 65/243 (26%), Positives = 108/243 (44%), Gaps = 51/243 (20%)

Query: 65  DVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALES---RAT----WNDPKRVEGL- 116
           D+ S+     +S+A++ NG V+ WG N++ QLG G   +   RA+       P  + G+ 
Sbjct: 152 DIFSIHFNQNNSMAISQNGRVYTWGANSKGQLGIGNNNTDPARASDPGNRQPPTEIPGIN 211

Query: 117 DQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKD--ITEAIVPSRVEALAGEKI 174
           D V     F   +V   +  DG++  +G++  GQLG G++     +   + V  +    +
Sbjct: 212 DAVMGAYGFNHALV---LKSDGTVVAFGQNNVGQLGNGENNLNRNSFSSNPVNVVQLRNV 268

Query: 175 VKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSST 234
           ++V  G  H+ A TE+G+++ WG +   + GNLG  +                  IS + 
Sbjct: 269 IQVIAGSEHSAALTENGEVYIWGRN---QYGNLGNGI------------------ISPAN 307

Query: 235 IEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYG 294
             ++  +  EG+ K K                  IA G DH L L  +G + S G N  G
Sbjct: 308 TVQSVPVKVEGLSKIK-----------------QIANGRDHILALTSDGKIYSWGLNASG 350

Query: 295 QLG 297
           QLG
Sbjct: 351 QLG 353


>gi|348583549|ref|XP_003477535.1| PREDICTED: RCC1 and BTB domain-containing protein 1-like [Cavia
           porcellus]
          Length = 531

 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 52/145 (35%), Positives = 81/145 (55%), Gaps = 5/145 (3%)

Query: 62  LPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNV 121
           L   V  V+ G +HS+A+  +G V+AWG NN  Q+G G+  ++ T   P++V     V  
Sbjct: 126 LIKQVVEVACGSHHSMALAADGEVFAWGYNNCGQVGSGSTANQPT---PRKVTNCLHVKR 182

Query: 122 CAAFASGVVSS-AIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFG 180
               A G  SS A+ D G ++ WG +  GQLGLG +  + + P RV AL    + ++  G
Sbjct: 183 VVGIACGQTSSMAVLDSGEVYGWGYNGNGQLGLGNNGNQ-LTPMRVAALHRVCVNQIVCG 241

Query: 181 WGHALAQTEDGKLFGWGYSADGRIG 205
           + H LA T++G L+ WG +  G++G
Sbjct: 242 YAHTLALTDEGLLYAWGANTYGQLG 266



 Score = 72.4 bits (176), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 70/293 (23%), Positives = 115/293 (39%), Gaps = 67/293 (22%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLP-SDVTSVSAGH-YHSLAVTNNGAVW 86
           V  FG      LG     TG       P ++  L    + S+S G   H L  T +G V+
Sbjct: 43  VFVFGLNYSNCLG-----TGDNQSTLVPKKLEALCGKKIKSLSYGSGPHVLLSTEDGVVY 97

Query: 87  AWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVV---------SSAIGDD 137
           AWG N   QLG G              +G+  + VC       V         S A+  D
Sbjct: 98  AWGHNGYSQLGNGTTN-----------QGIAPIQVCTNLLIKQVVEVACGSHHSMALAAD 146

Query: 138 GSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWG 197
           G ++ WG +  GQ+G G    +         L  +++V ++ G   ++A  + G+++GWG
Sbjct: 147 GEVFAWGYNNCGQVGSGSTANQPTPRKVTNCLHVKRVVGIACGQTSSMAVLDSGEVYGWG 206

Query: 198 YSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWE 257
           Y+ +G++G      + +P+             +++                         
Sbjct: 207 YNGNGQLGLGNNGNQLTPM------------RVAA------------------------- 229

Query: 258 PFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDI 310
              +  V V  I CG+ H+L L   G+L + G+N YGQLG   ++  + P  I
Sbjct: 230 ---LHRVCVNQIVCGYAHTLALTDEGLLYAWGANTYGQLGTGNKNNLLNPEHI 279



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 66/245 (26%), Positives = 104/245 (42%), Gaps = 59/245 (24%)

Query: 134 IGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWG-HALAQTEDGK 192
           + D+  ++V+G +    LG G D    +VP ++EAL G+KI  +S+G G H L  TEDG 
Sbjct: 37  VTDNDEVFVFGLNYSNCLGTG-DNQSTLVPKKLEALCGKKIKSLSYGSGPHVLLSTEDGV 95

Query: 193 LFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYM 252
           ++ WG++   ++GN                                      G   +   
Sbjct: 96  VYAWGHNGYSQLGN--------------------------------------GTTNQGIA 117

Query: 253 PI-IWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDIN 311
           PI +    L++  +VV++ACG  HS+ L  +G + + G N  GQ+G         P  + 
Sbjct: 118 PIQVCTNLLIK--QVVEVACGSHHSMALAADGEVFAWGYNNCGQVGSGSTANQPTPRKVT 175

Query: 312 --FH---PVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQ--LGRMGPDNVPLV 364
              H    V I+ G   S+A+  + S  V G       WG+N + Q  LG  G    P+ 
Sbjct: 176 NCLHVKRVVGIACGQTSSMAV--LDSGEVYG-------WGYNGNGQLGLGNNGNQLTPMR 226

Query: 365 VEGLE 369
           V  L 
Sbjct: 227 VAALH 231


>gi|308799813|ref|XP_003074688.1| FOG: RCC1 domain (ISS) [Ostreococcus tauri]
 gi|116000858|emb|CAL50538.1| FOG: RCC1 domain (ISS) [Ostreococcus tauri]
          Length = 604

 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 102/362 (28%), Positives = 158/362 (43%), Gaps = 43/362 (11%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRV---PGLPSDVTSVSAGHYHSLAVTNNGAV 85
           V+S+G  S G LG  T  T +  +   P RV     + + +T V+ G  H++A+   G +
Sbjct: 229 VISWGLASSGELGY-TGNTPI--EVNVPRRVFVGIDICTKITQVTTGSNHTMAIDEFGRL 285

Query: 86  WAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGK 145
           +A GR    QLG G     A ++   RVE L  ++V +A   G  S  I  DG++W WG 
Sbjct: 286 FACGRGRHGQLGHGTFRDAAPFS---RVEALKGMHVVSAVCGGSHSVCITSDGNVWAWGD 342

Query: 146 SKRGQLGLGKDITEAIV---------PSRVEAL--AGEKIVKVSFGWGHALAQTEDGKLF 194
            + GQLGLG D+T A           P  VE+L    E +  VS G  H++  T  G++F
Sbjct: 343 CRYGQLGLG-DLTFAAAAGWNNGVPWPCLVESLNDMDEPVASVSAGGAHSIFVTAGGRMF 401

Query: 195 GWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEIS--SSTIEKAQKLVSEGMEKEKYM 252
             G    G +G +GK    +P  +    +S     ++  +  I    +     +++ +  
Sbjct: 402 VCGRGKHGALG-VGK----NPFLTIGPPTSACGNRLTPEAVNIHHFVRRADGSVDQNRVQ 456

Query: 253 PIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGR-EKQDMGMFPVDIN 311
                P       V   A G  HS  L   G + + G N YGQLG  +K+   +F     
Sbjct: 457 QCSCGPR----CRVAVAAAGATHSCCLTACGGVFTTGENSYGQLGHGDKKSTFVFTRVEA 512

Query: 312 F---HPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQL--GRMGPDNVPLVVE 366
                 ++++SG  H+ A+ E      T G+  + +WG     QL  G M     P  V+
Sbjct: 513 LRGKRVITVASGHNHTGAMVE-----NTDGSNSLYTWGRGDWGQLGTGNMRSYTTPQEVK 567

Query: 367 GL 368
           G 
Sbjct: 568 GF 569



 Score = 45.4 bits (106), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 56/240 (23%), Positives = 92/240 (38%), Gaps = 56/240 (23%)

Query: 129 VVSSAIGDD--GSLWVWGKSKRGQLGLGKDITEAIVPSRV---EALAG---------EKI 174
           VV+ A GD    ++  +G+   GQLGLG     A  P+ V   + LA          E +
Sbjct: 152 VVTDAEGDKVGTTIATFGRGFHGQLGLGSYDNHA-APAFVRMGDELARGHDSDDEHFEGV 210

Query: 175 VKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSST 234
             ++ G  H +A + DG +  WG ++ G +G  G    ++P++ N+ R      +I +  
Sbjct: 211 DSIALGGSHCVALSRDGGVISWGLASSGELGYTG----NTPIEVNVPRRVFVGIDICT-- 264

Query: 235 IEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYG 294
                                         ++  +  G +H++ +   G L +CG   +G
Sbjct: 265 ------------------------------KITQVTTGSNHTMAIDEFGRLFACGRGRHG 294

Query: 295 QLGREKQDMGMFPVDINFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLG 354
           QLG      G F     F  V    G+    A+C    S        + +WG  R  QLG
Sbjct: 295 QLGH-----GTFRDAAPFSRVEALKGMHVVSAVCGGSHSVCITSDGNVWAWGDCRYGQLG 349


>gi|351711665|gb|EHB14584.1| Putative E3 ubiquitin-protein ligase HERC3 [Heterocephalus glaber]
          Length = 1051

 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 69/257 (26%), Positives = 119/257 (46%), Gaps = 28/257 (10%)

Query: 28  AVVSFGDGSQGALGLPTS-LTGVGGDAYEPTRVPGLPSD-VTSVSAGHYHSLAVTNNGAV 85
           +V    DG     GL T    G   +  +P ++  L    +  V+ G  HSLA+++ G +
Sbjct: 46  SVFLLEDGEVYTCGLNTKGQLGHEREGNKPEQIGALADQHIIHVACGESHSLALSDQGQL 105

Query: 86  WAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGK 145
           ++WG  ++ QLG    E       P+ ++ L+Q  +           A+  DG  + WGK
Sbjct: 106 FSWGAGSDGQLGLMTTEDSVAV--PRLIQKLNQQTILQVSCGNWHCLALAADGQFFTWGK 163

Query: 146 SKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIG 205
           +  GQLGLGK+ +    P RV +L G  + +V+ G  H+ A +  G +FGWG +  G++G
Sbjct: 164 NSHGQLGLGKEFSSQASPQRVRSLEGIPLAQVAAGGAHSFALSLSGAVFGWGMNNAGQLG 223

Query: 206 NLGKALESSPLDSNIDRSSESDQE-ISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGV 264
                               SD++ I    ++K + +   G+   +  P   +  L+   
Sbjct: 224 -------------------LSDEKGIKQGALDKTENI--RGLYSNRESPCHVK--LLRTQ 260

Query: 265 EVVDIACGFDHSLVLGR 281
           +VV I+CG +H+ VL +
Sbjct: 261 KVVYISCGDEHTAVLTK 277



 Score = 82.0 bits (201), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 76/261 (29%), Positives = 109/261 (41%), Gaps = 47/261 (18%)

Query: 39  ALGLPTSLTGVGGDAYEPTRVPGLPSD--VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQL 96
           +LG P   T + G   EP +V G  SD  V  V+ G  HS+ +  +G V+  G N + QL
Sbjct: 8   SLGQPGISTNLQGIVAEP-QVCGFISDRSVKEVACGGNHSVFLLEDGEVYTCGLNTKGQL 66

Query: 97  GRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKD 156
           G          N P+++  L   ++         S A+ D G L+ WG    GQLGL   
Sbjct: 67  GH-----EREGNKPEQIGALADQHIIHVACGESHSLALSDQGQLFSWGAGSDGQLGLMTT 121

Query: 157 ITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPL 216
                VP  ++ L  + I++VS G  H LA   DG+ F WG ++ G++G LGK   S   
Sbjct: 122 EDSVAVPRLIQKLNQQTILQVSCGNWHCLALAADGQFFTWGKNSHGQLG-LGKEFSSQA- 179

Query: 217 DSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHS 276
                    S Q + S                            +EG+ +  +A G  HS
Sbjct: 180 ---------SPQRVRS----------------------------LEGIPLAQVAAGGAHS 202

Query: 277 LVLGRNGVLLSCGSNVYGQLG 297
             L  +G +   G N  GQLG
Sbjct: 203 FALSLSGAVFGWGMNNAGQLG 223



 Score = 57.8 bits (138), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 57/230 (24%), Positives = 96/230 (41%), Gaps = 68/230 (29%)

Query: 136 DDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFG 195
           +DG ++  G + +GQLG  +   E   P ++ ALA + I+ V+ G  H+LA ++ G+LF 
Sbjct: 51  EDGEVYTCGLNTKGQLGHER---EGNKPEQIGALADQHIIHVACGESHSLALSDQGQLFS 107

Query: 196 WGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPII 255
           WG  +DG++G +                     E S +     QKL  +           
Sbjct: 108 WGAGSDGQLGLMTT-------------------EDSVAVPRLIQKLNQQT---------- 138

Query: 256 WEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQ-----------DMG 304
                     ++ ++CG  H L L  +G   + G N +GQLG  K+            + 
Sbjct: 139 ----------ILQVSCGNWHCLALAADGQFFTWGKNSHGQLGLGKEFSSQASPQRVRSLE 188

Query: 305 MFPVDINFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLG 354
             P+        +++G  HS A+      +++G   G   WG N + QLG
Sbjct: 189 GIPL------AQVAAGGAHSFAL------SLSGAVFG---WGMNNAGQLG 223



 Score = 48.9 bits (115), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 35/114 (30%), Positives = 58/114 (50%), Gaps = 18/114 (15%)

Query: 266 VVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDI----NFHPVSISSGL 321
           V ++ACG +HS+ L  +G + +CG N  GQLG E++  G  P  I    + H + ++ G 
Sbjct: 36  VKEVACGGNHSVFLLEDGEVYTCGLNTKGQLGHERE--GNKPEQIGALADQHIIHVACGE 93

Query: 322 GHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPDN---VPLVVEGLEGES 372
            HSLA+ +            + SWG     QLG M  ++   VP +++ L  ++
Sbjct: 94  SHSLALSD---------QGQLFSWGAGSDGQLGLMTTEDSVAVPRLIQKLNQQT 138


>gi|24215198|ref|NP_712679.1| regulator of chromosome condensation [Leptospira interrogans
           serovar Lai str. 56601]
 gi|386074505|ref|YP_005988822.1| regulator of chromosome condensation [Leptospira interrogans
           serovar Lai str. IPAV]
 gi|418724863|ref|ZP_13283647.1| chromosome condensation regulator RCC1 repeat protein [Leptospira
           interrogans str. UI 12621]
 gi|421119288|ref|ZP_15579612.1| chromosome condensation regulator RCC1 repeat protein [Leptospira
           interrogans str. Brem 329]
 gi|24196276|gb|AAN49697.1| regulator of chromosome condensation [Leptospira interrogans
           serovar Lai str. 56601]
 gi|353458294|gb|AER02839.1| regulator of chromosome condensation [Leptospira interrogans
           serovar Lai str. IPAV]
 gi|409961760|gb|EKO25503.1| chromosome condensation regulator RCC1 repeat protein [Leptospira
           interrogans str. UI 12621]
 gi|410347918|gb|EKO98769.1| chromosome condensation regulator RCC1 repeat protein [Leptospira
           interrogans str. Brem 329]
          Length = 506

 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 88/295 (29%), Positives = 137/295 (46%), Gaps = 30/295 (10%)

Query: 29  VVSFGDGSQGALGLPTSLTGVG-----GDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNG 83
           V ++G  S+G LG+  + T        G+   PT +PG+ +D    + G  H+L + ++G
Sbjct: 199 VYTWGANSKGQLGIGNNNTDPARASDPGNRQPPTEIPGI-NDAVMGAYGFNHALVLKSDG 257

Query: 84  AVWAWGRNNEVQLGRGA--LESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLW 141
            V A+G+NN  QLG G   L   +  ++P  V  L   NV    A    S+A+ ++G ++
Sbjct: 258 TVVAFGQNNVGQLGNGENNLNRNSFSSNPVNVVQLR--NVIQVIAGSEHSAALTENGEVY 315

Query: 142 VWGKSKRGQLGLG---KDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGY 198
           +WG+++ G LG G      T   VP +VE L+  KI +++ G  H LA T DGK++ WG 
Sbjct: 316 IWGRNQYGNLGNGIISPANTVQSVPVKVEGLS--KIKQIANGRDHILALTSDGKIYSWGL 373

Query: 199 SADGRIGNLGKALESSPLDSNIDRSSESDQEI-----SSSTIEKAQKLVSEGME------ 247
           +A G++G  G              + +    I      S  I K  ++   G        
Sbjct: 374 NASGQLGIGGNGNPPPTPIPTQILNIQDVASIWAGGTQSFAILKNGEVKGWGANGNMASL 433

Query: 248 --KEKYMPIIWEPF-LVEGVE-VVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGR 298
              E     ++EP   V G++ VV   CG  H+  L  NG +   G N  G LGR
Sbjct: 434 ALGESNTQKVYEPNKAVVGIDNVVHFGCGATHNFALLGNGEIYGWGWNFKGSLGR 488



 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 82/315 (26%), Positives = 126/315 (40%), Gaps = 78/315 (24%)

Query: 67  TSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRG-----ALESRATWNDPKRVEGLDQVNV 121
           T +SAG  HS  + N G ++  GRNN  QLG G      +  R    DP R       ++
Sbjct: 129 TKLSAGGAHSGFLIN-GELYTVGRNNFGQLGTGISTGDGINDRIVKVDPIR-------DI 180

Query: 122 CAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSR----------VEALAG 171
            +   +   S AI  +G ++ WG + +GQLG+G + T+   P+R           E    
Sbjct: 181 FSIHFNQNNSMAISQNGRVYTWGANSKGQLGIGNNNTD---PARASDPGNRQPPTEIPGI 237

Query: 172 EKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEIS 231
              V  ++G+ HAL    DG +  +G +  G++GN          ++N++R+S S   ++
Sbjct: 238 NDAVMGAYGFNHALVLKSDGTVVAFGQNNVGQLGN---------GENNLNRNSFSSNPVN 288

Query: 232 SSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSN 291
                                       +V+   V+ +  G +HS  L  NG +   G N
Sbjct: 289 ----------------------------VVQLRNVIQVIAGSEHSAALTENGEVYIWGRN 320

Query: 292 VYGQLGR----EKQDMGMFPVDIN--FHPVSISSGLGHSLAICEVRSSNVTGGARGIVSW 345
            YG LG         +   PV +        I++G  H LA+              I SW
Sbjct: 321 QYGNLGNGIISPANTVQSVPVKVEGLSKIKQIANGRDHILALTSDGK---------IYSW 371

Query: 346 GWNRSSQLGRMGPDN 360
           G N S QLG  G  N
Sbjct: 372 GLNASGQLGIGGNGN 386



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 65/243 (26%), Positives = 108/243 (44%), Gaps = 51/243 (20%)

Query: 65  DVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALES---RAT----WNDPKRVEGL- 116
           D+ S+     +S+A++ NG V+ WG N++ QLG G   +   RA+       P  + G+ 
Sbjct: 179 DIFSIHFNQNNSMAISQNGRVYTWGANSKGQLGIGNNNTDPARASDPGNRQPPTEIPGIN 238

Query: 117 DQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDIT--EAIVPSRVEALAGEKI 174
           D V     F   +V   +  DG++  +G++  GQLG G++     +   + V  +    +
Sbjct: 239 DAVMGAYGFNHALV---LKSDGTVVAFGQNNVGQLGNGENNLNRNSFSSNPVNVVQLRNV 295

Query: 175 VKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSST 234
           ++V  G  H+ A TE+G+++ WG +   + GNLG  +                  IS + 
Sbjct: 296 IQVIAGSEHSAALTENGEVYIWGRN---QYGNLGNGI------------------ISPAN 334

Query: 235 IEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYG 294
             ++  +  EG+ K K                  IA G DH L L  +G + S G N  G
Sbjct: 335 TVQSVPVKVEGLSKIK-----------------QIANGRDHILALTSDGKIYSWGLNASG 377

Query: 295 QLG 297
           QLG
Sbjct: 378 QLG 380


>gi|455789676|gb|EMF41593.1| chromosome condensation regulator RCC1 repeat protein [Leptospira
           interrogans serovar Lora str. TE 1992]
          Length = 506

 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 88/295 (29%), Positives = 137/295 (46%), Gaps = 30/295 (10%)

Query: 29  VVSFGDGSQGALGLPTSLTGVG-----GDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNG 83
           V ++G  S+G LG+  + T        G+   PT +PG+ +D    + G  H+L + ++G
Sbjct: 199 VYTWGANSKGQLGIGNNNTDPARASDPGNRQPPTEIPGI-NDAVMGAYGFNHALVLKSDG 257

Query: 84  AVWAWGRNNEVQLGRGA--LESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLW 141
            V A+G+NN  QLG G   L   +  ++P  V  L   NV    A    S+A+ ++G ++
Sbjct: 258 TVVAFGQNNVGQLGNGENNLNRNSFSSNPVNVVQLR--NVIQVIAGSEHSAALTENGEVY 315

Query: 142 VWGKSKRGQLGLG---KDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGY 198
           +WG+++ G LG G      T   VP +VE L+  KI +++ G  H LA T DGK++ WG 
Sbjct: 316 IWGRNQYGNLGNGIISPANTVQSVPVKVEGLS--KIKQIANGRDHILALTSDGKIYSWGL 373

Query: 199 SADGRIGNLGKALESSPLDSNIDRSSESDQEI-----SSSTIEKAQKLVSEGME------ 247
           +A G++G  G              + +    I      S  I K  ++   G        
Sbjct: 374 NASGQLGIGGNGNPPPTPIPTQILNIQDVASIWAGGTQSFAILKNGEVKGWGANGNMASL 433

Query: 248 --KEKYMPIIWEPF-LVEGVE-VVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGR 298
              E     ++EP   V G++ VV   CG  H+  L  NG +   G N  G LGR
Sbjct: 434 ALGESNTQKVYEPNKAVVGIDNVVHFGCGATHNFALLGNGEIYGWGWNFKGSLGR 488



 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 82/315 (26%), Positives = 126/315 (40%), Gaps = 78/315 (24%)

Query: 67  TSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRG-----ALESRATWNDPKRVEGLDQVNV 121
           T +SAG  HS  + N G ++  GRNN  QLG G      +  R    DP R       ++
Sbjct: 129 TKLSAGGAHSGFLIN-GELYTVGRNNFGQLGTGISTGDGINDRIVKVDPIR-------DI 180

Query: 122 CAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSR----------VEALAG 171
            +   +   S AI  +G ++ WG + +GQLG+G + T+   P+R           E    
Sbjct: 181 FSIHFNQNNSMAISQNGRVYTWGANSKGQLGIGNNNTD---PARASDPGNRQPPTEIPGI 237

Query: 172 EKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEIS 231
              V  ++G+ HAL    DG +  +G +  G++GN          ++N++R+S S   ++
Sbjct: 238 NDAVMGAYGFNHALVLKSDGTVVAFGQNNVGQLGN---------GENNLNRNSFSSNPVN 288

Query: 232 SSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSN 291
                                       +V+   V+ +  G +HS  L  NG +   G N
Sbjct: 289 ----------------------------VVQLRNVIQVIAGSEHSAALTENGEVYIWGRN 320

Query: 292 VYGQLGR----EKQDMGMFPVDIN--FHPVSISSGLGHSLAICEVRSSNVTGGARGIVSW 345
            YG LG         +   PV +        I++G  H LA+              I SW
Sbjct: 321 QYGNLGNGIISPANTVQSVPVKVEGLSKIKQIANGRDHILALTSDGK---------IYSW 371

Query: 346 GWNRSSQLGRMGPDN 360
           G N S QLG  G  N
Sbjct: 372 GLNASGQLGIGGNGN 386



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 65/243 (26%), Positives = 108/243 (44%), Gaps = 51/243 (20%)

Query: 65  DVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALES---RAT----WNDPKRVEGL- 116
           D+ S+     +S+A++ NG V+ WG N++ QLG G   +   RA+       P  + G+ 
Sbjct: 179 DIFSIHFNQNNSMAISQNGRVYTWGANSKGQLGIGNNNTDPARASDPGNRQPPTEIPGIN 238

Query: 117 DQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDIT--EAIVPSRVEALAGEKI 174
           D V     F   +V   +  DG++  +G++  GQLG G++     +   + V  +    +
Sbjct: 239 DAVMGAYGFNHALV---LKSDGTVVAFGQNNVGQLGNGENNLNRNSFSSNPVNVVQLRNV 295

Query: 175 VKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSST 234
           ++V  G  H+ A TE+G+++ WG +   + GNLG  +                  IS + 
Sbjct: 296 IQVIAGSEHSAALTENGEVYIWGRN---QYGNLGNGI------------------ISPAN 334

Query: 235 IEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYG 294
             ++  +  EG+ K K                  IA G DH L L  +G + S G N  G
Sbjct: 335 TVQSVPVKVEGLSKIK-----------------QIANGRDHILALTSDGKIYSWGLNASG 377

Query: 295 QLG 297
           QLG
Sbjct: 378 QLG 380


>gi|421124305|ref|ZP_15584565.1| chromosome condensation regulator RCC1 repeat protein [Leptospira
           interrogans serovar Grippotyphosa str. 2006006986]
 gi|421136680|ref|ZP_15596778.1| chromosome condensation regulator RCC1 repeat protein [Leptospira
           interrogans serovar Grippotyphosa str. Andaman]
 gi|410019138|gb|EKO85965.1| chromosome condensation regulator RCC1 repeat protein [Leptospira
           interrogans serovar Grippotyphosa str. Andaman]
 gi|410438224|gb|EKP87320.1| chromosome condensation regulator RCC1 repeat protein [Leptospira
           interrogans serovar Grippotyphosa str. 2006006986]
          Length = 506

 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 88/295 (29%), Positives = 137/295 (46%), Gaps = 30/295 (10%)

Query: 29  VVSFGDGSQGALGLPTSLTGVG-----GDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNG 83
           V ++G  S+G LG+  + T        G+   PT +PG+ +D    + G  H+L + ++G
Sbjct: 199 VYTWGANSKGQLGIGNNNTDPARASDPGNRQPPTEIPGI-NDAVMGAYGFNHALVLKSDG 257

Query: 84  AVWAWGRNNEVQLGRGA--LESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLW 141
            V A+G+NN  QLG G   L   +  ++P  V  L   NV    A    S+A+ ++G ++
Sbjct: 258 TVVAFGQNNVGQLGNGENNLNRNSFSSNPVNVVQLR--NVIQVIAGSEHSAALTENGEVY 315

Query: 142 VWGKSKRGQLGLG---KDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGY 198
           +WG+++ G LG G      T   VP +VE L+  KI +++ G  H LA T DGK++ WG 
Sbjct: 316 IWGRNQYGNLGNGIISPANTVQSVPVKVEGLS--KIKQIANGRDHILALTSDGKIYSWGL 373

Query: 199 SADGRIGNLGKALESSPLDSNIDRSSESDQEI-----SSSTIEKAQKLVSEGME------ 247
           +A G++G  G              + +    I      S  I K  ++   G        
Sbjct: 374 NASGQLGIGGNGNPPPTPIPTQILNIQDVASIWAGGTQSFAILKNGEVKGWGANGNMASL 433

Query: 248 --KEKYMPIIWEPF-LVEGVE-VVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGR 298
              E     ++EP   V G++ VV   CG  H+  L  NG +   G N  G LGR
Sbjct: 434 ALGESNTQKVYEPNKAVVGIDNVVHFGCGATHNFALLGNGEIYGWGWNFKGSLGR 488



 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 82/315 (26%), Positives = 126/315 (40%), Gaps = 78/315 (24%)

Query: 67  TSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRG-----ALESRATWNDPKRVEGLDQVNV 121
           T +SAG  HS  + N G ++  GRNN  QLG G      +  R    DP R       ++
Sbjct: 129 TKLSAGGAHSGFLIN-GELYTVGRNNFGQLGTGISTGDGINDRIVKVDPIR-------DI 180

Query: 122 CAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSR----------VEALAG 171
            +   +   S AI  +G ++ WG + +GQLG+G + T+   P+R           E    
Sbjct: 181 FSIHFNQNNSMAISQNGRVYTWGANSKGQLGIGNNNTD---PARASDPGNRQPPTEIPGI 237

Query: 172 EKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEIS 231
              V  ++G+ HAL    DG +  +G +  G++GN          ++N++R+S S   ++
Sbjct: 238 NDAVMGAYGFNHALVLKSDGTVVAFGQNNVGQLGN---------GENNLNRNSFSSNPVN 288

Query: 232 SSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSN 291
                                       +V+   V+ +  G +HS  L  NG +   G N
Sbjct: 289 ----------------------------VVQLRNVIQVIAGSEHSAALTENGEVYIWGRN 320

Query: 292 VYGQLGR----EKQDMGMFPVDIN--FHPVSISSGLGHSLAICEVRSSNVTGGARGIVSW 345
            YG LG         +   PV +        I++G  H LA+              I SW
Sbjct: 321 QYGNLGNGIISPANTVQSVPVKVEGLSKIKQIANGRDHILALTSDGK---------IYSW 371

Query: 346 GWNRSSQLGRMGPDN 360
           G N S QLG  G  N
Sbjct: 372 GLNASGQLGIGGNGN 386



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 65/243 (26%), Positives = 108/243 (44%), Gaps = 51/243 (20%)

Query: 65  DVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALES---RAT----WNDPKRVEGL- 116
           D+ S+     +S+A++ NG V+ WG N++ QLG G   +   RA+       P  + G+ 
Sbjct: 179 DIFSIHFNQNNSMAISQNGRVYTWGANSKGQLGIGNNNTDPARASDPGNRQPPTEIPGIN 238

Query: 117 DQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDIT--EAIVPSRVEALAGEKI 174
           D V     F   +V   +  DG++  +G++  GQLG G++     +   + V  +    +
Sbjct: 239 DAVMGAYGFNHALV---LKSDGTVVAFGQNNVGQLGNGENNLNRNSFSSNPVNVVQLRNV 295

Query: 175 VKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSST 234
           ++V  G  H+ A TE+G+++ WG +   + GNLG  +                  IS + 
Sbjct: 296 IQVIAGSEHSAALTENGEVYIWGRN---QYGNLGNGI------------------ISPAN 334

Query: 235 IEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYG 294
             ++  +  EG+ K K                  IA G DH L L  +G + S G N  G
Sbjct: 335 TVQSVPVKVEGLSKIK-----------------QIANGRDHILALTSDGKIYSWGLNASG 377

Query: 295 QLG 297
           QLG
Sbjct: 378 QLG 380


>gi|384245915|gb|EIE19407.1| RCC1/BLIP-II [Coccomyxa subellipsoidea C-169]
          Length = 438

 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 51/102 (50%), Positives = 66/102 (64%), Gaps = 7/102 (6%)

Query: 122 CAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGW 181
           CAA  SGV S A+G DG+L+ +GKSKRGQLGLG+  + A  P R+  +  E I  V  GW
Sbjct: 165 CAA--SGVASIAVGADGALYSFGKSKRGQLGLGEGRSAADTPERIPGV--EGIAAVGCGW 220

Query: 182 GHALAQTEDGKLFGWGYSADGRIGNL---GKALESSPLDSNI 220
           GHALA TEDG++  WG+ +  R+GNL   G A     LDS++
Sbjct: 221 GHALALTEDGEVLSWGFPSGNRLGNLLDGGSAQVCCSLDSSL 262



 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 83/282 (29%), Positives = 131/282 (46%), Gaps = 56/282 (19%)

Query: 28  AVVSFGDGSQGALGLPTSLTGVGGDAYE-PTRVPGLPSDVTSVSAGHYHSLAVTNNGAVW 86
           A+ SFG   +G LGL     G G  A + P R+PG+   + +V  G  H+LA+T +G V 
Sbjct: 180 ALYSFGKSKRGQLGL-----GEGRSAADTPERIPGV-EGIAAVGCGWGHALALTEDGEVL 233

Query: 87  AWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKS 146
           +WG  +  +LG               ++G     VC +  S +V   +  DG+L+ +G +
Sbjct: 234 SWGFPSGNRLG-------------NLLDG-GSAQVCCSLDSSLV---LARDGTLYTFGDN 276

Query: 147 KRGQLGLGKDITEA-----IVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGY--- 198
             GQLG    ++E      +V  R E  A  ++ +++ G GH LA T DGK+  WG+   
Sbjct: 277 SLGQLGR-PSVSEHGPEDWVV--RGEDGAPMRLQRIAAGLGHCLAVTHDGKVVVWGWKHG 333

Query: 199 ------------SADGRIGNLGKALESSPLDSNIDRSSE-SDQEISSSTIEKAQKLVSEG 245
                       S  G   N    L +  + S I  ++  +D + SS T  +   L + G
Sbjct: 334 LAGHPETLLAPVSVPGLPLNTHARLAAGRVHSLIATTAAGADTQQSSETRGRNNALYAFG 393

Query: 246 MEKEKYMPI-----IWEPFLV---EGVEVVDIACGFDHSLVL 279
             +   + +     ++EP LV   EG+ + D+ CG DHSLVL
Sbjct: 394 NGQNGRLGLGSSQSVFEPQLVQDIEGLSIKDVVCGHDHSLVL 435


>gi|340368103|ref|XP_003382592.1| PREDICTED: hypothetical protein LOC100632986 [Amphimedon
            queenslandica]
          Length = 2287

 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 68/247 (27%), Positives = 106/247 (42%), Gaps = 70/247 (28%)

Query: 66   VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAA- 124
            +TS+S G  HSLA++++G+++AWG N+E QLG   L+                  +C   
Sbjct: 1329 ITSISCGVKHSLALSSDGSLYAWGDNSEGQLGLKTLQP-----------------ICKPS 1371

Query: 125  -----FASGVVSSAIGD--------DGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAG 171
                 F   VV +A GD        DG ++ WGK+   QLG  K ++  + P+++  L  
Sbjct: 1372 ILSLPFGRPVVQAACGDHHTLALTQDGRVFSWGKNTTSQLGHSKGLSRVLAPTQITHLIS 1431

Query: 172  EKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEIS 231
              +VK+  G  H+ A T  G +F WG   D R    G                       
Sbjct: 1432 TPVVKLICGSNHSAALTVSGGVFLWG---DNRRAQCG---------------------FG 1467

Query: 232  SSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSN 291
              T + +   ++E M +                 V  +ACG DH++   ++G + + GSN
Sbjct: 1468 HVTTKISYPTLNEFMGR---------------YAVSHVACGTDHTVFQVQSGHIYTVGSN 1512

Query: 292  VYGQLGR 298
             YGQLGR
Sbjct: 1513 EYGQLGR 1519



 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 51/187 (27%), Positives = 88/187 (47%), Gaps = 16/187 (8%)

Query: 24   ASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPS-----DVTSVSAGHYHSLA 78
            +S  ++ ++GD S+G LGL T          +P   P + S      V   + G +H+LA
Sbjct: 1343 SSDGSLYAWGDNSEGQLGLKT---------LQPICKPSILSLPFGRPVVQAACGDHHTLA 1393

Query: 79   VTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDG 138
            +T +G V++WG+N   QLG     SR     P ++  L    V         S+A+   G
Sbjct: 1394 LTQDGRVFSWGKNTTSQLGHSKGLSRVLA--PTQITHLISTPVVKLICGSNHSAALTVSG 1451

Query: 139  SLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGY 198
             +++WG ++R Q G G   T+   P+  E +    +  V+ G  H + Q + G ++  G 
Sbjct: 1452 GVFLWGDNRRAQCGFGHVTTKISYPTLNEFMGRYAVSHVACGTDHTVFQVQSGHIYTVGS 1511

Query: 199  SADGRIG 205
            +  G++G
Sbjct: 1512 NEYGQLG 1518



 Score = 55.8 bits (133), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 59/233 (25%), Positives = 93/233 (39%), Gaps = 66/233 (28%)

Query: 140  LWVWGKSKRGQLGLGKDITE-AIVPSRVEALAGEKIVK---------------VSFGWGH 183
            ++ WG++  G LGL  D+ E  ++ +R     G+K +K               +S G  H
Sbjct: 1281 MFCWGEAHDGALGL--DVKEKCVMEARPNTAFGDKKIKYIAHIDTFDDTIITSISCGVKH 1338

Query: 184  ALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVS 243
            +LA + DG L+ WG +++G++G                             ++  Q +  
Sbjct: 1339 SLALSSDGSLYAWGDNSEGQLG-----------------------------LKTLQPICK 1369

Query: 244  EGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDM 303
                      I+  PF   G  VV  ACG  H+L L ++G + S G N   QLG  K   
Sbjct: 1370 PS--------ILSLPF---GRPVVQAACGDHHTLALTQDGRVFSWGKNTTSQLGHSK--- 1415

Query: 304  GMFPVDINFHPVSISSGLGHSLA--ICEVRSSNVTGGARGIVSWGWNRSSQLG 354
            G+  V     P  I+  +   +   IC    S     + G+  WG NR +Q G
Sbjct: 1416 GLSRV---LAPTQITHLISTPVVKLICGSNHSAALTVSGGVFLWGDNRRAQCG 1465


>gi|417783645|ref|ZP_12431363.1| chromosome condensation regulator RCC1 repeat protein [Leptospira
           interrogans str. C10069]
 gi|418703959|ref|ZP_13264841.1| chromosome condensation regulator RCC1 repeat protein [Leptospira
           interrogans serovar Hebdomadis str. R499]
 gi|418711972|ref|ZP_13272720.1| chromosome condensation regulator RCC1 repeat protein [Leptospira
           interrogans str. UI 08452]
 gi|409953269|gb|EKO07770.1| chromosome condensation regulator RCC1 repeat protein [Leptospira
           interrogans str. C10069]
 gi|410766443|gb|EKR37128.1| chromosome condensation regulator RCC1 repeat protein [Leptospira
           interrogans serovar Hebdomadis str. R499]
 gi|410791551|gb|EKR85224.1| chromosome condensation regulator RCC1 repeat protein [Leptospira
           interrogans str. UI 08452]
          Length = 506

 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 88/295 (29%), Positives = 137/295 (46%), Gaps = 30/295 (10%)

Query: 29  VVSFGDGSQGALGLPTSLTGVG-----GDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNG 83
           V ++G  S+G LG+  + T        G+   PT +PG+ +D    + G  H+L + ++G
Sbjct: 199 VYTWGANSKGQLGIGNNNTDPARASDPGNRQPPTEIPGI-NDAVMGAYGFNHALVLKSDG 257

Query: 84  AVWAWGRNNEVQLGRGA--LESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLW 141
            V A+G+NN  QLG G   L   +  ++P  V  L   NV    A    S+A+ ++G ++
Sbjct: 258 TVVAFGQNNVGQLGNGENNLNRNSFSSNPVNVVQLR--NVIQVIAGSEHSAALTENGEVY 315

Query: 142 VWGKSKRGQLGLG---KDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGY 198
           +WG+++ G LG G      T   VP +VE L+  KI +++ G  H LA T DGK++ WG 
Sbjct: 316 IWGRNQYGNLGNGIISPANTVQSVPVKVEGLS--KIKQIANGRDHILALTSDGKIYSWGL 373

Query: 199 SADGRIGNLGKALESSPLDSNIDRSSESDQEI-----SSSTIEKAQKLVSEGME------ 247
           +A G++G  G              + +    I      S  I K  ++   G        
Sbjct: 374 NASGQLGIGGNGNPPPTPIPTQILNIQDVASIWAGGTQSFAILKNGEVKGWGANGNMASL 433

Query: 248 --KEKYMPIIWEPF-LVEGVE-VVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGR 298
              E     ++EP   V G++ VV   CG  H+  L  NG +   G N  G LGR
Sbjct: 434 ALGESNTQKVYEPNKAVVGIDNVVHFGCGATHNFALLGNGEIYGWGWNFKGSLGR 488



 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 82/315 (26%), Positives = 126/315 (40%), Gaps = 78/315 (24%)

Query: 67  TSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRG-----ALESRATWNDPKRVEGLDQVNV 121
           T +SAG  HS  + N G ++  GRNN  QLG G      +  R    DP R       ++
Sbjct: 129 TKLSAGGAHSGFLIN-GELYTVGRNNFGQLGTGISTGDGINDRIVKVDPIR-------DI 180

Query: 122 CAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSR----------VEALAG 171
            +   +   S AI  +G ++ WG + +GQLG+G + T+   P+R           E    
Sbjct: 181 FSIHFNQNNSMAISQNGRVYTWGANSKGQLGIGNNNTD---PARASDPGNRQPPTEIPGI 237

Query: 172 EKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEIS 231
              V  ++G+ HAL    DG +  +G +  G++GN          ++N++R+S S   ++
Sbjct: 238 NDAVMGAYGFNHALVLKSDGTVVAFGQNNVGQLGN---------GENNLNRNSFSSNPVN 288

Query: 232 SSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSN 291
                                       +V+   V+ +  G +HS  L  NG +   G N
Sbjct: 289 ----------------------------VVQLRNVIQVIAGSEHSAALTENGEVYIWGRN 320

Query: 292 VYGQLGR----EKQDMGMFPVDIN--FHPVSISSGLGHSLAICEVRSSNVTGGARGIVSW 345
            YG LG         +   PV +        I++G  H LA+              I SW
Sbjct: 321 QYGNLGNGIISPANTVQSVPVKVEGLSKIKQIANGRDHILALTSDGK---------IYSW 371

Query: 346 GWNRSSQLGRMGPDN 360
           G N S QLG  G  N
Sbjct: 372 GLNASGQLGIGGNGN 386



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 65/243 (26%), Positives = 108/243 (44%), Gaps = 51/243 (20%)

Query: 65  DVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALES---RAT----WNDPKRVEGL- 116
           D+ S+     +S+A++ NG V+ WG N++ QLG G   +   RA+       P  + G+ 
Sbjct: 179 DIFSIHFNQNNSMAISQNGRVYTWGANSKGQLGIGNNNTDPARASDPGNRQPPTEIPGIN 238

Query: 117 DQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDIT--EAIVPSRVEALAGEKI 174
           D V     F   +V   +  DG++  +G++  GQLG G++     +   + V  +    +
Sbjct: 239 DAVMGAYGFNHALV---LKSDGTVVAFGQNNVGQLGNGENNLNRNSFSSNPVNVVQLRNV 295

Query: 175 VKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSST 234
           ++V  G  H+ A TE+G+++ WG +   + GNLG  +                  IS + 
Sbjct: 296 IQVIAGSEHSAALTENGEVYIWGRN---QYGNLGNGI------------------ISPAN 334

Query: 235 IEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYG 294
             ++  +  EG+ K K                  IA G DH L L  +G + S G N  G
Sbjct: 335 TVQSVPVKVEGLSKIK-----------------QIANGRDHILALTSDGKIYSWGLNASG 377

Query: 295 QLG 297
           QLG
Sbjct: 378 QLG 380


>gi|421116180|ref|ZP_15576568.1| chromosome condensation regulator RCC1 repeat protein [Leptospira
           interrogans serovar Canicola str. Fiocruz LV133]
 gi|410012184|gb|EKO70287.1| chromosome condensation regulator RCC1 repeat protein [Leptospira
           interrogans serovar Canicola str. Fiocruz LV133]
          Length = 506

 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 88/295 (29%), Positives = 137/295 (46%), Gaps = 30/295 (10%)

Query: 29  VVSFGDGSQGALGLPTSLTGVG-----GDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNG 83
           V ++G  S+G LG+  + T        G+   PT +PG+ +D    + G  H+L + ++G
Sbjct: 199 VYTWGANSKGQLGIGNNNTDPARASDPGNRQPPTEIPGI-NDAVMGAYGFNHALVLKSDG 257

Query: 84  AVWAWGRNNEVQLGRGA--LESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLW 141
            V A+G+NN  QLG G   L   +  ++P  V  L   NV    A    S+A+ ++G ++
Sbjct: 258 TVVAFGQNNVGQLGNGENNLNRNSFSSNPVNVVQLR--NVIQVIAGSEHSAALTENGEVY 315

Query: 142 VWGKSKRGQLGLG---KDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGY 198
           +WG+++ G LG G      T   VP +VE L+  KI +++ G  H LA T DGK++ WG 
Sbjct: 316 IWGRNQYGNLGNGIISPANTVQSVPVKVEGLS--KIKQIANGRDHILALTSDGKIYSWGL 373

Query: 199 SADGRIGNLGKALESSPLDSNIDRSSESDQEI-----SSSTIEKAQKLVSEGME------ 247
           +A G++G  G              + +    I      S  I K  ++   G        
Sbjct: 374 NASGQLGIGGNGNPPPTPIPTQILNIQDVASIWAGGTQSFAILKNGEVKGWGANGNMASL 433

Query: 248 --KEKYMPIIWEPF-LVEGVE-VVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGR 298
              E     ++EP   V G++ VV   CG  H+  L  NG +   G N  G LGR
Sbjct: 434 ALGESNTQKVYEPNKAVVGIDNVVHFGCGATHNFALLGNGEIYGWGWNFKGSLGR 488



 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 82/315 (26%), Positives = 126/315 (40%), Gaps = 78/315 (24%)

Query: 67  TSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRG-----ALESRATWNDPKRVEGLDQVNV 121
           T +SAG  HS  + N G ++  GRNN  QLG G      +  R    DP R       ++
Sbjct: 129 TKLSAGGAHSGFLIN-GELYTVGRNNFGQLGTGISTGDGINDRIVKVDPIR-------DI 180

Query: 122 CAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSR----------VEALAG 171
            +   +   S AI  +G ++ WG + +GQLG+G + T+   P+R           E    
Sbjct: 181 FSIHFNQNNSMAISQNGRVYTWGANSKGQLGIGNNNTD---PARASDPGNRQPPTEIPGI 237

Query: 172 EKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEIS 231
              V  ++G+ HAL    DG +  +G +  G++GN          ++N++R+S S   ++
Sbjct: 238 NDAVMGAYGFNHALVLKSDGTVVAFGQNNVGQLGN---------GENNLNRNSFSSNPVN 288

Query: 232 SSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSN 291
                                       +V+   V+ +  G +HS  L  NG +   G N
Sbjct: 289 ----------------------------VVQLRNVIQVIAGSEHSAALTENGEVYIWGRN 320

Query: 292 VYGQLGR----EKQDMGMFPVDIN--FHPVSISSGLGHSLAICEVRSSNVTGGARGIVSW 345
            YG LG         +   PV +        I++G  H LA+              I SW
Sbjct: 321 QYGNLGNGIISPANTVQSVPVKVEGLSKIKQIANGRDHILALTSDGK---------IYSW 371

Query: 346 GWNRSSQLGRMGPDN 360
           G N S QLG  G  N
Sbjct: 372 GLNASGQLGIGGNGN 386



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 65/243 (26%), Positives = 108/243 (44%), Gaps = 51/243 (20%)

Query: 65  DVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALES---RAT----WNDPKRVEGL- 116
           D+ S+     +S+A++ NG V+ WG N++ QLG G   +   RA+       P  + G+ 
Sbjct: 179 DIFSIHFNQNNSMAISQNGRVYTWGANSKGQLGIGNNNTDPARASDPGNRQPPTEIPGIN 238

Query: 117 DQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDIT--EAIVPSRVEALAGEKI 174
           D V     F   +V   +  DG++  +G++  GQLG G++     +   + V  +    +
Sbjct: 239 DAVMGAYGFNHALV---LKSDGTVVAFGQNNVGQLGNGENNLNRNSFSSNPVNVVQLRNV 295

Query: 175 VKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSST 234
           ++V  G  H+ A TE+G+++ WG +   + GNLG  +                  IS + 
Sbjct: 296 IQVIAGSEHSAALTENGEVYIWGRN---QYGNLGNGI------------------ISPAN 334

Query: 235 IEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYG 294
             ++  +  EG+ K K                  IA G DH L L  +G + S G N  G
Sbjct: 335 TVQSVPVKVEGLSKIK-----------------QIANGRDHILALTSDGKIYSWGLNASG 377

Query: 295 QLG 297
           QLG
Sbjct: 378 QLG 380


>gi|403347403|gb|EJY73122.1| RCC1 and BTB domaincontaining protein putative [Oxytricha
           trifallax]
          Length = 685

 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 99/344 (28%), Positives = 143/344 (41%), Gaps = 79/344 (22%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYE---PTRVPGLPS-DVTSVSAGHYHSLAVTNNGA 84
           V  FG  S G LGL        GD  E   P++V      +VT ++AG+ H   +T NG 
Sbjct: 41  VFVFGQNSYGELGL--------GDVQERSIPSQVRFFDEMNVTQIAAGNEHIAVLTRNGD 92

Query: 85  VWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCA-AFASGVVSSA-IGDDGSLWV 142
           V   G N   QLG G  +S +T   PK++E L  + +   + A+G  + A I  DG L+ 
Sbjct: 93  VLTVGFNGSGQLGHGNNKSIST---PKKIESLKNIRITHISSANGCENLAIISQDGKLYT 149

Query: 143 WGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGK--------LF 194
            G +  GQLG G   +    P+ V+AL   ++  VS  + H+L  T+D +        ++
Sbjct: 150 CGYNNYGQLGHGTQ-SNLSTPTLVQALKDTQVTNVSCSYYHSLIVTQDMRQASNQQTTVY 208

Query: 195 GWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPI 254
             G + +G++G      E +P    I RS  + Q                          
Sbjct: 209 SVGRNDNGQLGQEHTCHEITP---KIIRSLNTRQ-------------------------- 239

Query: 255 IWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDI---- 310
                      V+  ACG  HS+ +  +G + SCG N  GQLG         PV I    
Sbjct: 240 -----------VIQTACGLHHSVFVTVHGEVFSCGFNDNGQLGHNDTKSRNQPVLIESLK 288

Query: 311 NFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLG 354
           N   V  + G  H+L    VR    TG    I ++G N   QLG
Sbjct: 289 NKFIVQAACGYYHTL----VRRD--TG---EIYAFGRNDKGQLG 323



 Score = 77.8 bits (190), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 85/323 (26%), Positives = 139/323 (43%), Gaps = 41/323 (12%)

Query: 48  GVGGDAYEPTRVPGLP-SDVTSVSAGHYHSLAVTNN--------GAVWAWGRNNEVQLGR 98
           G   +   PT V  L  + VT+VS  +YHSL VT +          V++ GRN+  QLG+
Sbjct: 161 GTQSNLSTPTLVQALKDTQVTNVSCSYYHSLIVTQDMRQASNQQTTVYSVGRNDNGQLGQ 220

Query: 99  GALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDIT 158
              E       PK +  L+   V         S  +   G ++  G +  GQLG   D  
Sbjct: 221 ---EHTCHEITPKIIRSLNTRQVIQTACGLHHSVFVTVHGEVFSCGFNDNGQLG-HNDTK 276

Query: 159 EAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIG--NLGKAL----- 211
               P  +E+L  + IV+ + G+ H L + + G+++ +G +  G++G    G+AL     
Sbjct: 277 SRNQPVLIESLKNKFIVQAACGYYHTLVRRDTGEIYAFGRNDKGQLGIETNGQALIQPKQ 336

Query: 212 -ESSPLDSNIDRS----------SESDQEISSSTIEKAQKL--VSEGMEKEKYMPIIWEP 258
            +     SNI  S           E +Q  S S  E    +  ++E        P +   
Sbjct: 337 IQEFLTVSNIQHSGGNQNQLHSGQEHNQPSSQSLGESGAIMQGLAESNNLNNQQPQVQ-- 394

Query: 259 FLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDI-NFHP--- 314
           +L + V +  IACG  HS+ L  +G L + G   +GQLG+   +    P  + + H    
Sbjct: 395 YLSKKVNISKIACGCYHSIALCESGQLFTFGRGNHGQLGQGNTEDQKLPKQVASLHDKKV 454

Query: 315 VSISSGLGHSLAICEVRSSNVTG 337
           + I+ G  H++ +  V+   V G
Sbjct: 455 IGIAGGFYHTIVL--VKQKKVKG 475


>gi|442629373|ref|NP_001261249.1| CG9153, isoform C [Drosophila melanogaster]
 gi|323301230|gb|ADX35957.1| LD13353p [Drosophila melanogaster]
 gi|440215116|gb|AGB93944.1| CG9153, isoform C [Drosophila melanogaster]
          Length = 1062

 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 77/292 (26%), Positives = 123/292 (42%), Gaps = 49/292 (16%)

Query: 24  ASGTAVVSFGDGSQGALGLPTSLTGVGGDAYE----PTRVPGLP-SDVTSVSAGHYHSLA 78
           ASG  +  +G  S G LGL       GG   E    P+++P  P + V  V+ GH H+L 
Sbjct: 2   ASGKELYCWGSTSHGQLGL-------GGIEDEQILTPSQIPWTPDTAVQQVACGHRHTLF 54

Query: 79  VTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDG 138
           +T  G V+A G N+  QLG      R   +    +  L    +         S A+ D G
Sbjct: 55  LTATGKVYACGSNDYSQLGHDLPTKRPRMSPFLLIPELQDYVIIQICCGSRHSLALSDWG 114

Query: 139 SLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGY 198
            +  WG +  GQLG   D     +P  V  L  + +V+++ G  H+LA T  G+L+ WG 
Sbjct: 115 QVLSWGDNDCGQLGHATDKEIVQLPKVVRQLVTKTVVQIACGNNHSLALTSCGELYSWGS 174

Query: 199 SADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEP 258
           +  G++G       +SP D      +  +  +  +T+                       
Sbjct: 175 NIYGQLG------VNSPND-----LTHCNYPLRLTTL----------------------- 200

Query: 259 FLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDI 310
               G+ +  IACG +HS ++ ++G +   G N  GQLG   +    +P  +
Sbjct: 201 ---LGIPLAAIACGGNHSFLISKSGAVFGWGRNNCGQLGLNDETNRSYPTQL 249



 Score = 64.3 bits (155), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 55/179 (30%), Positives = 88/179 (49%), Gaps = 6/179 (3%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSD-VTSVSAGHYHSLAVTNNGAVWA 87
           V+S+GD   G LG  T    V      P  V  L +  V  ++ G+ HSLA+T+ G +++
Sbjct: 116 VLSWGDNDCGQLGHATDKEIVQ----LPKVVRQLVTKTVVQIACGNNHSLALTSCGELYS 171

Query: 88  WGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSK 147
           WG N   QLG  +       N P R+  L  + + A    G  S  I   G+++ WG++ 
Sbjct: 172 WGSNIYGQLGVNSPNDLTHCNYPLRLTTLLGIPLAAIACGGNHSFLISKSGAVFGWGRNN 231

Query: 148 RGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGN 206
            GQLGL  D T    P++++ L    +  V+ G   ++  T +G +F  G  A G++G+
Sbjct: 232 CGQLGLN-DETNRSYPTQLKTLRTLGVRFVACGDEFSVFLTNEGGVFTCGAGAYGQLGH 289



 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 68/240 (28%), Positives = 102/240 (42%), Gaps = 35/240 (14%)

Query: 140 LWVWGKSKRGQLGLGKDITEAIV-PSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGY 198
           L+ WG +  GQLGLG    E I+ PS++       + +V+ G  H L  T  GK++  G 
Sbjct: 7   LYCWGSTSHGQLGLGGIEDEQILTPSQIPWTPDTAVQQVACGHRHTLFLTATGKVYACGS 66

Query: 199 SADGRIGN--------LGKALESSPLDSNIDRSSESDQEISSSTIEKAQKL--------- 241
           +   ++G+        +   L    L   +          S +  +  Q L         
Sbjct: 67  NDYSQLGHDLPTKRPRMSPFLLIPELQDYVIIQICCGSRHSLALSDWGQVLSWGDNDCGQ 126

Query: 242 VSEGMEKEKYMPIIWEPFLVEGV---EVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGR 298
           +    +KE    I+  P +V  +    VV IACG +HSL L   G L S GSN+YGQLG 
Sbjct: 127 LGHATDKE----IVQLPKVVRQLVTKTVVQIACGNNHSLALTSCGELYSWGSNIYGQLGV 182

Query: 299 EKQDMGMFPVDINF--HPVSISSGLGHSLA--ICEVRSSNVTGGARGIVSWGWNRSSQLG 354
                   P D+    +P+ +++ LG  LA   C    S +   +  +  WG N   QLG
Sbjct: 183 NS------PNDLTHCNYPLRLTTLLGIPLAAIACGGNHSFLISKSGAVFGWGRNNCGQLG 236


>gi|195014693|ref|XP_001984062.1| GH15214 [Drosophila grimshawi]
 gi|193897544|gb|EDV96410.1| GH15214 [Drosophila grimshawi]
          Length = 1052

 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 92/351 (26%), Positives = 147/351 (41%), Gaps = 61/351 (17%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYE----PTRVPGLP-SDVTSVSAGHYHSLAVTNNG 83
           +  +G+ S G LGL       GG   E    P+++P  P S V  ++ GH H+L +T +G
Sbjct: 3   LYCWGNASHGQLGL-------GGIEDEQILTPSKMPWQPDSAVNQIACGHRHTLFLTASG 55

Query: 84  AVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVW 143
            V+A G N+  QLG   L S+     P+ V+ +     C +  S     A+ + G +  W
Sbjct: 56  KVYACGSNDYAQLGH-ELSSKRPLQIPELVDCVITQIACGSRHS----MALTEWGQVLSW 110

Query: 144 GKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGR 203
           G ++ GQLG   D     +P  V AL  + +V+++ G  H+LA T  G+L+ WG +  G+
Sbjct: 111 GDNECGQLGHASDQDVVQLPKTVRALVSKTVVQIACGNNHSLALTCCGELYAWGSNIYGQ 170

Query: 204 IGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEG 263
           +G              +   SE  Q  +                     P++    L  G
Sbjct: 171 LG--------------VKTPSELGQCNA---------------------PMLLTTLL--G 193

Query: 264 VEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFHPVSISSGLGH 323
           + V  IACG +HS ++ ++  +   G N  GQLG   +    +P  +          LG 
Sbjct: 194 IPVRAIACGGNHSFLISKSSAVFGWGRNNCGQLGLNDETNRAYPTQL-----KTLRTLGV 248

Query: 324 SLAICEVRSSNVTGGARGIVSWGWNRSSQLGR--MGPDNVPLVVEGLEGES 372
               C    S       G+ + G     QLG    G + +P +V  L G +
Sbjct: 249 RFVACGDEFSVFLTNEGGVFTCGAGAYGQLGHGFCGNEMLPRMVMELMGST 299


>gi|417770001|ref|ZP_12417914.1| chromosome condensation regulator RCC1 repeat protein [Leptospira
           interrogans serovar Pomona str. Pomona]
 gi|418682056|ref|ZP_13243276.1| chromosome condensation regulator RCC1 repeat protein [Leptospira
           interrogans serovar Pomona str. Kennewicki LC82-25]
 gi|418708883|ref|ZP_13269683.1| chromosome condensation regulator RCC1 repeat protein [Leptospira
           interrogans serovar Grippotyphosa str. UI 08368]
 gi|400326066|gb|EJO78335.1| chromosome condensation regulator RCC1 repeat protein [Leptospira
           interrogans serovar Pomona str. Kennewicki LC82-25]
 gi|409948018|gb|EKN98009.1| chromosome condensation regulator RCC1 repeat protein [Leptospira
           interrogans serovar Pomona str. Pomona]
 gi|410770813|gb|EKR46026.1| chromosome condensation regulator RCC1 repeat protein [Leptospira
           interrogans serovar Grippotyphosa str. UI 08368]
 gi|455670426|gb|EMF35408.1| chromosome condensation regulator RCC1 repeat protein [Leptospira
           interrogans serovar Pomona str. Fox 32256]
 gi|456967262|gb|EMG08660.1| chromosome condensation regulator RCC1 repeat protein [Leptospira
           interrogans serovar Grippotyphosa str. LT2186]
          Length = 506

 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 88/295 (29%), Positives = 137/295 (46%), Gaps = 30/295 (10%)

Query: 29  VVSFGDGSQGALGLPTSLTGVG-----GDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNG 83
           V ++G  S+G LG+  + T        G+   PT +PG+ +D    + G  H+L + ++G
Sbjct: 199 VYTWGANSKGQLGIGNNNTDPARASDPGNRQPPTEIPGI-NDAVMGAYGFNHALVLKSDG 257

Query: 84  AVWAWGRNNEVQLGRGA--LESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLW 141
            V A+G+NN  QLG G   L   +  ++P  V  L   NV    A    S+A+ ++G ++
Sbjct: 258 TVVAFGQNNVGQLGNGENNLNRNSFSSNPVNVVQLR--NVIQVIAGSEHSAALTENGEVY 315

Query: 142 VWGKSKRGQLGLG---KDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGY 198
           +WG+++ G LG G      T   VP +VE L+  KI +++ G  H LA T DGK++ WG 
Sbjct: 316 IWGRNQYGNLGNGIISPANTVQSVPVKVEGLS--KIKQIANGRDHILALTSDGKIYSWGL 373

Query: 199 SADGRIGNLGKALESSPLDSNIDRSSESDQEI-----SSSTIEKAQKLVSEGME------ 247
           +A G++G  G              + +    I      S  I K  ++   G        
Sbjct: 374 NASGQLGIGGNGNPPPTPIPTQILNIQDVASIWAGGTQSFAILKNGEVKGWGANGNMASL 433

Query: 248 --KEKYMPIIWEPF-LVEGVE-VVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGR 298
              E     ++EP   V G++ VV   CG  H+  L  NG +   G N  G LGR
Sbjct: 434 ALGESNTQKVYEPNKAVVGIDNVVHFGCGATHNFALLGNGEIYGWGWNFKGSLGR 488



 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 82/315 (26%), Positives = 126/315 (40%), Gaps = 78/315 (24%)

Query: 67  TSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRG-----ALESRATWNDPKRVEGLDQVNV 121
           T +SAG  HS  + N G ++  GRNN  QLG G      +  R    DP R       ++
Sbjct: 129 TKLSAGGAHSGFLIN-GELYTVGRNNFGQLGTGISTGDGINDRIVKVDPIR-------DI 180

Query: 122 CAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSR----------VEALAG 171
            +   +   S AI  +G ++ WG + +GQLG+G + T+   P+R           E    
Sbjct: 181 FSIHFNQNNSMAISQNGRVYTWGANSKGQLGIGNNNTD---PARASDPGNRQPPTEIPGI 237

Query: 172 EKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEIS 231
              V  ++G+ HAL    DG +  +G +  G++GN          ++N++R+S S   ++
Sbjct: 238 NDAVMGAYGFNHALVLKSDGTVVAFGQNNVGQLGN---------GENNLNRNSFSSNPVN 288

Query: 232 SSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSN 291
                                       +V+   V+ +  G +HS  L  NG +   G N
Sbjct: 289 ----------------------------VVQLRNVIQVIAGSEHSAALTENGEVYIWGRN 320

Query: 292 VYGQLGR----EKQDMGMFPVDIN--FHPVSISSGLGHSLAICEVRSSNVTGGARGIVSW 345
            YG LG         +   PV +        I++G  H LA+              I SW
Sbjct: 321 QYGNLGNGIISPANTVQSVPVKVEGLSKIKQIANGRDHILALTSDGK---------IYSW 371

Query: 346 GWNRSSQLGRMGPDN 360
           G N S QLG  G  N
Sbjct: 372 GLNASGQLGIGGNGN 386



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 65/243 (26%), Positives = 108/243 (44%), Gaps = 51/243 (20%)

Query: 65  DVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALES---RAT----WNDPKRVEGL- 116
           D+ S+     +S+A++ NG V+ WG N++ QLG G   +   RA+       P  + G+ 
Sbjct: 179 DIFSIHFNQNNSMAISQNGRVYTWGANSKGQLGIGNNNTDPARASDPGNRQPPTEIPGIN 238

Query: 117 DQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDIT--EAIVPSRVEALAGEKI 174
           D V     F   +V   +  DG++  +G++  GQLG G++     +   + V  +    +
Sbjct: 239 DAVMGAYGFNHALV---LKSDGTVVAFGQNNVGQLGNGENNLNRNSFSSNPVNVVQLRNV 295

Query: 175 VKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSST 234
           ++V  G  H+ A TE+G+++ WG +   + GNLG  +                  IS + 
Sbjct: 296 IQVIAGSEHSAALTENGEVYIWGRN---QYGNLGNGI------------------ISPAN 334

Query: 235 IEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYG 294
             ++  +  EG+ K K                  IA G DH L L  +G + S G N  G
Sbjct: 335 TVQSVPVKVEGLSKIK-----------------QIANGRDHILALTSDGKIYSWGLNASG 377

Query: 295 QLG 297
           QLG
Sbjct: 378 QLG 380


>gi|365122388|ref|ZP_09339291.1| hypothetical protein HMPREF1033_02637 [Tannerella sp.
           6_1_58FAA_CT1]
 gi|363642628|gb|EHL81974.1| hypothetical protein HMPREF1033_02637 [Tannerella sp.
           6_1_58FAA_CT1]
          Length = 883

 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 71/211 (33%), Positives = 108/211 (51%), Gaps = 22/211 (10%)

Query: 8   VHNHVNVLTSRIFMRSASGT--AVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSD 65
           + N V  +++R+F   A  T  ++  +GD + G LG      G   + + P ++     D
Sbjct: 521 IMNDVLSVSTRVFQTLAVKTDGSLWGWGDNTFGQLG-----DGTTTERHSPVKIM---ED 572

Query: 66  VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAF 125
           V SVSAG  H+LA+  +G++WAWG N+  QLG G    R   + P +V G    +V +  
Sbjct: 573 VLSVSAGDDHTLAIKTDGSLWAWGGNSFGQLGDGTTTER---HSPVKVMG----DVLSVS 625

Query: 126 ASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHAL 185
           A    + AI  DGSLW WG + RGQLG G   TE   P ++     E ++ VS G    +
Sbjct: 626 AGDDHTLAIKADGSLWGWGANSRGQLGDGT-TTEKHSPVKIM----EDVLSVSAGDDCTM 680

Query: 186 AQTEDGKLFGWGYSADGRIGNLGKALESSPL 216
           A   DG L+ WG ++ G++G+       SP+
Sbjct: 681 AIKTDGSLWAWGRNSFGQLGDGTTTERHSPV 711



 Score = 85.9 bits (211), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 89/302 (29%), Positives = 141/302 (46%), Gaps = 41/302 (13%)

Query: 66  VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAF 125
           V SVSAG  +++A+  +G++WA G N   +LG G +  R   + P +V     +N   + 
Sbjct: 430 VLSVSAGQNYTMAIKADGSLWACGSNYSGELGDGTITER---HFPVKV-----MNDVLSV 481

Query: 126 ASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHAL 185
           ++ V + AI  D SLW WG + RG LG G   TE   P ++       ++ VS      L
Sbjct: 482 STDVSTLAIKTDDSLWGWGANVRGLLGDGT-TTERHSPVKIM----NDVLSVSTRVFQTL 536

Query: 186 AQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKL---- 241
           A   DG L+GWG +  G++G+       SP+    D  S S  +  +  I+    L    
Sbjct: 537 AVKTDGSLWGWGDNTFGQLGDGTTTERHSPVKIMEDVLSVSAGDDHTLAIKTDGSLWAWG 596

Query: 242 ------VSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQ 295
                 + +G   E++ P+      V G +V+ ++ G DH+L +  +G L   G+N  GQ
Sbjct: 597 GNSFGQLGDGTTTERHSPV-----KVMG-DVLSVSAGDDHTLAIKADGSLWGWGANSRGQ 650

Query: 296 LGREKQDMGMFPVDINFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGR 355
           LG         PV I    +S+S+G   ++AI        T G+     W W R+S  G+
Sbjct: 651 LGDGTTTEKHSPVKIMEDVLSVSAGDDCTMAI-------KTDGSL----WAWGRNS-FGQ 698

Query: 356 MG 357
           +G
Sbjct: 699 LG 700



 Score = 85.1 bits (209), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 92/303 (30%), Positives = 134/303 (44%), Gaps = 45/303 (14%)

Query: 66  VTSVSA-GHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAA 124
           VT+VS  G  H+LAV  +G++W WG N   QLG G    R   + P ++       V + 
Sbjct: 381 VTNVSTRGGSHTLAVKTDGSLWGWGANTLGQLGDGTTTRR---HSPVKIMN----GVLSV 433

Query: 125 FASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHA 184
            A    + AI  DGSLW  G +  G+LG G  ITE   P +V          VS      
Sbjct: 434 SAGQNYTMAIKADGSLWACGSNYSGELGDGT-ITERHFPVKVMNDVLSVSTDVS-----T 487

Query: 185 LAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKL--- 241
           LA   D  L+GWG +  G +G+       SP+    D  S S +   +  ++    L   
Sbjct: 488 LAIKTDDSLWGWGANVRGLLGDGTTTERHSPVKIMNDVLSVSTRVFQTLAVKTDGSLWGW 547

Query: 242 -------VSEGMEKEKYMPI-IWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVY 293
                  + +G   E++ P+ I E       +V+ ++ G DH+L +  +G L + G N +
Sbjct: 548 GDNTFGQLGDGTTTERHSPVKIME-------DVLSVSAGDDHTLAIKTDGSLWAWGGNSF 600

Query: 294 GQLGREKQDMGMFPVDINFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGW--NRSS 351
           GQLG         PV +    +S+S+G  H+LAI           A G + WGW  N   
Sbjct: 601 GQLGDGTTTERHSPVKVMGDVLSVSAGDDHTLAI----------KADGSL-WGWGANSRG 649

Query: 352 QLG 354
           QLG
Sbjct: 650 QLG 652


>gi|384152605|ref|YP_005535421.1| Rhs family protein [Amycolatopsis mediterranei S699]
 gi|399541002|ref|YP_006553664.1| Rhs family protein [Amycolatopsis mediterranei S699]
 gi|340530759|gb|AEK45964.1| Rhs family protein [Amycolatopsis mediterranei S699]
 gi|398321772|gb|AFO80719.1| Rhs family protein [Amycolatopsis mediterranei S699]
          Length = 1532

 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 97/334 (29%), Positives = 139/334 (41%), Gaps = 37/334 (11%)

Query: 52  DAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPK 111
           DA  P +V GL S  T++++G Y   AV ++G  WAWG N    LG G    R+T   P 
Sbjct: 11  DAKTPAQVSGLTSS-TAIASGLYTGYAVKSDGTAWAWGYNTYGGLGDGTTTDRST---PV 66

Query: 112 RVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAG 171
           RV  L   NV A         A+  DG++W WG    G+LG G    ++  P RV +L G
Sbjct: 67  RVGTL--TNVIAVAGGSFTGYALKSDGTVWAWGNGYDGELGNGG-TADSHTPVRVGSLTG 123

Query: 172 EKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLD-------SNIDRSS 224
              +  S G G+AL    DG ++ WG ++ G+IG+       +P+        S I  +S
Sbjct: 124 VTAIAGSGGNGYALK--SDGTVWSWGINSSGQIGDGTTTTRLAPVQVKNLPGVSAIAAAS 181

Query: 225 ESDQEI---SSSTI----EKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSL 277
            S+      S  T+    + A   +  G         +             IA G     
Sbjct: 182 GSETAYAVKSDGTVWSWGDNASGQLGNGSTAANTSTAVQVKNFTGATA---IAGGLSDGY 238

Query: 278 VLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDIN-FHPVSISSGLGHSLAICEVRSSNVT 336
            L  +G + S G   YGQLG          V ++    ++  +  GHS       ++   
Sbjct: 239 ALKSDGTVWSWGDGSYGQLGNGGTTQSAVAVQVSGLTGIAAIAAGGHS-----AYATRAD 293

Query: 337 GGARGIVSWGWNRSSQLGRMGPDN--VPLVVEGL 368
           G AR   SWG N + QLG     N   P+VV  L
Sbjct: 294 GTAR---SWGSNSNGQLGNGTTTNAKTPVVVSTL 324



 Score = 72.8 bits (177), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 54/179 (30%), Positives = 89/179 (49%), Gaps = 11/179 (6%)

Query: 31  SFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGR 90
           ++G+G  G LG      G   D++ P RV  L + VT+++    +  A+ ++G VW+WG 
Sbjct: 95  AWGNGYDGELG-----NGGTADSHTPVRVGSL-TGVTAIAGSGGNGYALKSDGTVWSWGI 148

Query: 91  NNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQ 150
           N+  Q+G G   +R     P +V+ L  V+  AA +    + A+  DG++W WG +  GQ
Sbjct: 149 NSSGQIGDGTTTTRLA---PVQVKNLPGVSAIAAASGSETAYAVKSDGTVWSWGDNASGQ 205

Query: 151 LGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGK 209
           LG G          +V+   G   +      G+AL    DG ++ WG  + G++GN G 
Sbjct: 206 LGNGSTAANTSTAVQVKNFTGATAIAGGLSDGYALK--SDGTVWSWGDGSYGQLGNGGT 262



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 62/218 (28%), Positives = 94/218 (43%), Gaps = 26/218 (11%)

Query: 95  QLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSS-AIGDDGSLWVWGKSKRGQLGL 153
           QLG G      T   P +V GL       A ASG+ +  A+  DG+ W WG +  G LG 
Sbjct: 3   QLGNGTTIDAKT---PAQVSGLTS---STAIASGLYTGYAVKSDGTAWAWGYNTYGGLGD 56

Query: 154 GKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALES 213
           G   T+   P RV  L    ++ V+ G     A   DG ++ WG   DG +GN G A   
Sbjct: 57  GT-TTDRSTPVRVGTL--TNVIAVAGGSFTGYALKSDGTVWAWGNGYDGELGNGGTADSH 113

Query: 214 SPLD-------SNIDRSS------ESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFL 260
           +P+        + I  S       +SD  + S  I  + + + +G    +  P+  +   
Sbjct: 114 TPVRVGSLTGVTAIAGSGGNGYALKSDGTVWSWGINSSGQ-IGDGTTTTRLAPV--QVKN 170

Query: 261 VEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGR 298
           + GV  +  A G + +  +  +G + S G N  GQLG 
Sbjct: 171 LPGVSAIAAASGSETAYAVKSDGTVWSWGDNASGQLGN 208



 Score = 46.2 bits (108), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 38/121 (31%), Positives = 54/121 (44%), Gaps = 6/121 (4%)

Query: 66  VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAF 125
            T+++ G     A+ ++G VW+WG  +  QLG G     A      +V GL    + A  
Sbjct: 227 ATAIAGGLSDGYALKSDGTVWSWGDGSYGQLGNGGTTQSAV---AVQVSGL--TGIAAIA 281

Query: 126 ASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHAL 185
           A G  + A   DG+   WG +  GQLG G   T A  P  V  L     V  ++   +AL
Sbjct: 282 AGGHSAYATRADGTARSWGSNSNGQLGNGT-TTNAKTPVVVSTLTSVIAVAANYNSAYAL 340

Query: 186 A 186
           A
Sbjct: 341 A 341


>gi|326668760|ref|XP_686789.5| PREDICTED: e3 ubiquitin-protein ligase HERC2, partial [Danio rerio]
          Length = 3645

 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 102/369 (27%), Positives = 159/369 (43%), Gaps = 79/369 (21%)

Query: 19   IFMRSASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVT---SVSAGHYH 75
            +F  +A G  V + G+ + G LGL  S     G    P ++  L + V    +V +G  H
Sbjct: 1813 LFAVTAEG-KVYACGEATNGRLGLGLS----SGTIPIPRQISALSNYVVKKVAVHSGGRH 1867

Query: 76   SLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIG 135
            ++A+T +G V++WG  ++ +LG     SR   + P+ +E L    +         S+AI 
Sbjct: 1868 AMALTVDGKVFSWGEGDDGKLGHF---SRMNCDKPRLIEALKTKRIRDIACGSSHSAAIT 1924

Query: 136  DDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGW--GHALAQTEDGKL 193
              G L+ WG  + G+LG G + T+ + P  V+ L G ++V+V+ G      LA T++G +
Sbjct: 1925 SSGELYSWGLGEYGRLGHGDNTTQ-LRPKLVKVLLGHRVVQVACGSRDAQTLALTDEGMV 1983

Query: 194  FGWGYSADGRIGNLGK-ALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYM 252
            F WG   DG  G LG+   E   +  NI+R                              
Sbjct: 1984 FSWG---DGDFGKLGRGGSEGCNIPQNIER------------------------------ 2010

Query: 253  PIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGR------EKQDM--G 304
                    + G  V  I CG   SL L ++GV+ + G   Y +LG        K  M  G
Sbjct: 2011 --------LNGQGVCQIECGAQFSLALTKSGVVWTWGKGDYFRLGHGTDVHVRKPQMVEG 2062

Query: 305  MFPVDINFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGR--MGPDNVP 362
            +    I    V ++ G  H LA+ E      TG    + +WG N   Q G      +  P
Sbjct: 2063 LRGKKI----VHVAVGALHCLAVTE------TG---QVFAWGDNDHGQQGNGTTTVNRKP 2109

Query: 363  LVVEGLEGE 371
             +V+GLEG+
Sbjct: 2110 TLVQGLEGQ 2118



 Score = 84.3 bits (207), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 83/312 (26%), Positives = 136/312 (43%), Gaps = 61/312 (19%)

Query: 68   SVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFAS 127
            +V++G  H LA+++ G +++WG   + +LG G   +R+  + P+ +E L  V V    A 
Sbjct: 2854 AVNSGGKHCLALSSEGELYSWGEAEDGKLGHG---NRSPCDRPRVIESLRGVEVVDIAAG 2910

Query: 128  GVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHA--L 185
            G  S+ I   G L+ WGK + G+LG G D  + + P  VEAL G +++ V+ G G A  L
Sbjct: 2911 GAHSACITASGELYTWGKGRYGRLGHG-DSEDQLKPKLVEALQGHRVIDVACGSGDAQTL 2969

Query: 186  AQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEG 245
              T+D  ++ WG   DG  G LG+                      S   +   K+ S  
Sbjct: 2970 CLTDDDMVWSWG---DGDYGKLGRG--------------------GSDGCKVPMKIDS-- 3004

Query: 246  MEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGM 305
                           + G+ VV + CG   S+ L ++G + + G   Y +LG    D   
Sbjct: 3005 ---------------LTGLGVVKVECGSQFSVALTKSGAVYTWGKGDYHRLGHGSDDHVR 3049

Query: 306  FPVDIN----FHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPDNV 361
             P  +        ++I++G  H   +C      V        +WG N   QLG    + +
Sbjct: 3050 RPRQVQGLQGKKVIAIATGSLH--CVCCTEDGEV-------YTWGDNDEGQLGDGTTNAI 3100

Query: 362  --PLVVEGLEGE 371
              P +V  L+G+
Sbjct: 3101 QRPRLVAALQGK 3112



 Score = 75.1 bits (183), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 83/305 (27%), Positives = 124/305 (40%), Gaps = 64/305 (20%)

Query: 78   AVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDD 137
            A T    V+ WG N++ QLG G   S+     P   E L  +NV           A+  +
Sbjct: 1763 AATIRTKVFVWGLNDKDQLG-GLKGSKI--KVPSFSETLSALNVVQVAGGSKSLFAVTAE 1819

Query: 138  GSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWG--HALAQTEDGKLFG 195
            G ++  G++  G+LGLG       +P ++ AL+   + KV+   G  HA+A T DGK+F 
Sbjct: 1820 GKVYACGEATNGRLGLGLSSGTIPIPRQISALSNYVVKKVAVHSGGRHAMALTVDGKVFS 1879

Query: 196  WGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPII 255
            WG   DG++G+  +         N D+                                 
Sbjct: 1880 WGEGDDGKLGHFSRM--------NCDK--------------------------------- 1898

Query: 256  WEPFLVEGVE---VVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINF 312
              P L+E ++   + DIACG  HS  +  +G L S G   YG+LG               
Sbjct: 1899 --PRLIEALKTKRIRDIACGSSHSAAITSSGELYSWGLGEYGRLGHGDN-------TTQL 1949

Query: 313  HPVSISSGLGHSL--AICEVRSSNVTG-GARGIV-SWGWNRSSQLGRMGPD--NVPLVVE 366
             P  +   LGH +    C  R +        G+V SWG     +LGR G +  N+P  +E
Sbjct: 1950 RPKLVKVLLGHRVVQVACGSRDAQTLALTDEGMVFSWGDGDFGKLGRGGSEGCNIPQNIE 2009

Query: 367  GLEGE 371
             L G+
Sbjct: 2010 RLNGQ 2014



 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 54/188 (28%), Positives = 94/188 (50%), Gaps = 15/188 (7%)

Query: 23   SASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPS----DVTSVSAGHYHSLA 78
            +ASG  + ++G G  G LG      G   D  +P  V  L      DV +  +G   +L 
Sbjct: 2918 TASG-ELYTWGKGRYGRLG-----HGDSEDQLKPKLVEALQGHRVIDV-ACGSGDAQTLC 2970

Query: 79   VTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDG 138
            +T++  VW+WG  +  +LGRG  +       P +++ L  + V         S A+   G
Sbjct: 2971 LTDDDMVWSWGDGDYGKLGRGGSDGCKV---PMKIDSLTGLGVVKVECGSQFSVALTKSG 3027

Query: 139  SLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGY 198
            +++ WGK    +LG G D      P +V+ L G+K++ ++ G  H +  TEDG+++ WG 
Sbjct: 3028 AVYTWGKGDYHRLGHGSD-DHVRRPRQVQGLQGKKVIAIATGSLHCVCCTEDGEVYTWGD 3086

Query: 199  SADGRIGN 206
            + +G++G+
Sbjct: 3087 NDEGQLGD 3094



 Score = 69.7 bits (169), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 80/301 (26%), Positives = 131/301 (43%), Gaps = 55/301 (18%)

Query: 77   LAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNV--CAAFASGVVSSAI 134
             AVT +G ++A G     +LG G  ES +T   P  +E +  V +   A  + G    A+
Sbjct: 2809 FAVTADGKLYATGYGAGGRLGIGGTESVST---PTLLESIQHVFIRKVAVNSGGKHCLAL 2865

Query: 135  GDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLF 194
              +G L+ WG+++ G+LG G + +    P  +E+L G ++V ++ G  H+   T  G+L+
Sbjct: 2866 SSEGELYSWGEAEDGKLGHG-NRSPCDRPRVIESLRGVEVVDIAAGGAHSACITASGELY 2924

Query: 195  GWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPI 254
             WG    GR G LG                +S+ ++    +E  Q               
Sbjct: 2925 TWG---KGRYGRLGHG--------------DSEDQLKPKLVEALQ--------------- 2952

Query: 255  IWEPFLVEGVEVVDIACGF--DHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINF 312
                    G  V+D+ACG     +L L  + ++ S G   YG+LGR   D    P+ I+ 
Sbjct: 2953 --------GHRVIDVACGSGDAQTLCLTDDDMVWSWGDGDYGKLGRGGSDGCKVPMKIDS 3004

Query: 313  HPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPDNV--PLVVEGLEG 370
                  +GLG     C  + S     +  + +WG     +LG    D+V  P  V+GL+G
Sbjct: 3005 -----LTGLGVVKVECGSQFSVALTKSGAVYTWGKGDYHRLGHGSDDHVRRPRQVQGLQG 3059

Query: 371  E 371
            +
Sbjct: 3060 K 3060



 Score = 68.9 bits (167), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 65/201 (32%), Positives = 89/201 (44%), Gaps = 44/201 (21%)

Query: 31   SFGDGSQGALG--------LPT---SLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAV 79
            S+GDG  G LG        +P    SLTG+G               V  V  G   S+A+
Sbjct: 2979 SWGDGDYGKLGRGGSDGCKVPMKIDSLTGLG---------------VVKVECGSQFSVAL 3023

Query: 80   TNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGS 139
            T +GAV+ WG+ +  +LG G   S      P++V+GL    V A     +      +DG 
Sbjct: 3024 TKSGAVYTWGKGDYHRLGHG---SDDHVRRPRQVQGLQGKKVIAIATGSLHCVCCTEDGE 3080

Query: 140  LWVWGKSKRGQLGLGKDITEAIV-PSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGY 198
            ++ WG +  GQLG G   T AI  P  V AL G+KI +V+ G  H LA         W  
Sbjct: 3081 VYTWGDNDEGQLGDG--TTNAIQRPRLVAALQGKKINRVACGSAHTLA---------WST 3129

Query: 199  SADGRIGNLGKALESSPLDSN 219
            S   +  N GK     P++ N
Sbjct: 3130 S---KPTNAGKLPAQVPMEYN 3147



 Score = 65.1 bits (157), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 49/168 (29%), Positives = 76/168 (45%), Gaps = 24/168 (14%)

Query: 29   VVSFGDGSQGALG--------LPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVT 80
            V S+GDG  G LG        +P ++  + G              V  +  G   SLA+T
Sbjct: 1983 VFSWGDGDFGKLGRGGSEGCNIPQNIERLNGQG------------VCQIECGAQFSLALT 2030

Query: 81   NNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSL 140
             +G VW WG+ +  +LG G   +      P+ VEGL    +       +   A+ + G +
Sbjct: 2031 KSGVVWTWGKGDYFRLGHG---TDVHVRKPQMVEGLRGKKIVHVAVGALHCLAVTETGQV 2087

Query: 141  WVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQT 188
            + WG +  GQ G G   T    P+ V+ L G+KI +V+ G  H++A T
Sbjct: 2088 FAWGDNDHGQQGNGT-TTVNRKPTLVQGLEGQKITRVACGSSHSVAWT 2134



 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 80/263 (30%), Positives = 115/263 (43%), Gaps = 42/263 (15%)

Query: 135  GDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLF 194
            G  G+++ WG + RGQLG G +  +  VP+  EALA  + V++  G     A T DGKL+
Sbjct: 2760 GGSGTIYGWGHNHRGQLG-GIEGAKVKVPTPTEALATLRPVQLIGGEQTLFAVTADGKLY 2818

Query: 195  GWGYSADGRIGNLGKALESSP-LDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMP 253
              GY A GR+G  G    S+P L  +I         ++S   +    L SEG   E Y  
Sbjct: 2819 ATGYGAGGRLGIGGTESVSTPTLLESIQHVFIRKVAVNSGG-KHCLALSSEG---ELYS- 2873

Query: 254  IIW-----------------EPFLVE---GVEVVDIACGFDHSLVLGRNGVLLSCGSNVY 293
              W                  P ++E   GVEVVDIA G  HS  +  +G L + G   Y
Sbjct: 2874 --WGEAEDGKLGHGNRSPCDRPRVIESLRGVEVVDIAAGGAHSACITASGELYTWGKGRY 2931

Query: 294  GQLGREKQDMGMFPVDIN----FHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNR 349
            G+LG    +  + P  +        + ++ G G +  +C      V        SWG   
Sbjct: 2932 GRLGHGDSEDQLKPKLVEALQGHRVIDVACGSGDAQTLCLTDDDMVW-------SWGDGD 2984

Query: 350  SSQLGRMGPD--NVPLVVEGLEG 370
              +LGR G D   VP+ ++ L G
Sbjct: 2985 YGKLGRGGSDGCKVPMKIDSLTG 3007



 Score = 39.3 bits (90), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 25/74 (33%), Positives = 35/74 (47%), Gaps = 6/74 (8%)

Query: 28   AVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLP-SDVTSVSAGHYHSLAVTNNGAVW 86
            AV ++G G    LG      G       P +V GL    V +++ G  H +  T +G V+
Sbjct: 3028 AVYTWGKGDYHRLG-----HGSDDHVRRPRQVQGLQGKKVIAIATGSLHCVCCTEDGEVY 3082

Query: 87   AWGRNNEVQLGRGA 100
             WG N+E QLG G 
Sbjct: 3083 TWGDNDEGQLGDGT 3096


>gi|421083959|ref|ZP_15544825.1| chromosome condensation regulator RCC1 repeat protein [Leptospira
           santarosai str. HAI1594]
 gi|421102219|ref|ZP_15562827.1| chromosome condensation regulator RCC1 repeat protein [Leptospira
           interrogans serovar Icterohaemorrhagiae str. Verdun LP]
 gi|410368047|gb|EKP23427.1| chromosome condensation regulator RCC1 repeat protein [Leptospira
           interrogans serovar Icterohaemorrhagiae str. Verdun LP]
 gi|410433506|gb|EKP77851.1| chromosome condensation regulator RCC1 repeat protein [Leptospira
           santarosai str. HAI1594]
          Length = 478

 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 88/295 (29%), Positives = 137/295 (46%), Gaps = 30/295 (10%)

Query: 29  VVSFGDGSQGALGLPTSLTGVG-----GDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNG 83
           V ++G  S+G LG+  + T        G+   PT +PG+ +D    + G  H+L + ++G
Sbjct: 171 VYTWGANSKGQLGIGNNNTDPARASDPGNRQPPTEIPGI-NDAVMGAYGFNHALVLKSDG 229

Query: 84  AVWAWGRNNEVQLGRGA--LESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLW 141
            V A+G+NN  QLG G   L   +  ++P  V  L   NV    A    S+A+ ++G ++
Sbjct: 230 TVVAFGQNNVGQLGNGENNLNRNSFSSNPVNVVQLR--NVIQVIAGSEHSAALTENGEVY 287

Query: 142 VWGKSKRGQLGLG---KDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGY 198
           +WG+++ G LG G      T   VP +VE L+  KI +++ G  H LA T DGK++ WG 
Sbjct: 288 IWGRNQYGNLGNGIISPANTVQSVPVKVEGLS--KIKQIANGRDHILALTSDGKIYSWGL 345

Query: 199 SADGRIGNLGKALESSPLDSNIDRSSESDQEI-----SSSTIEKAQKLVSEGME------ 247
           +A G++G  G              + +    I      S  I K  ++   G        
Sbjct: 346 NASGQLGIGGNGNPPPTPIPTQILNIQDVASIWAGGTQSFAILKNGEVKGWGANGNMASL 405

Query: 248 --KEKYMPIIWEPF-LVEGVE-VVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGR 298
              E     ++EP   V G++ VV   CG  H+  L  NG +   G N  G LGR
Sbjct: 406 ALGESNTQKVYEPNKAVVGIDNVVHFGCGATHNFALLGNGEIYGWGWNFKGSLGR 460



 Score = 65.9 bits (159), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 82/315 (26%), Positives = 126/315 (40%), Gaps = 78/315 (24%)

Query: 67  TSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRG-----ALESRATWNDPKRVEGLDQVNV 121
           T +SAG  HS  + N G ++  GRNN  QLG G      +  R    DP R       ++
Sbjct: 101 TKLSAGGAHSGFLIN-GELYTVGRNNFGQLGTGISTGDGINDRIVKVDPIR-------DI 152

Query: 122 CAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSR----------VEALAG 171
            +   +   S AI  +G ++ WG + +GQLG+G + T+   P+R           E    
Sbjct: 153 FSIHFNQNNSMAISQNGRVYTWGANSKGQLGIGNNNTD---PARASDPGNRQPPTEIPGI 209

Query: 172 EKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEIS 231
              V  ++G+ HAL    DG +  +G +  G++GN          ++N++R+S S   ++
Sbjct: 210 NDAVMGAYGFNHALVLKSDGTVVAFGQNNVGQLGN---------GENNLNRNSFSSNPVN 260

Query: 232 SSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSN 291
                                       +V+   V+ +  G +HS  L  NG +   G N
Sbjct: 261 ----------------------------VVQLRNVIQVIAGSEHSAALTENGEVYIWGRN 292

Query: 292 VYGQLGR----EKQDMGMFPVDIN--FHPVSISSGLGHSLAICEVRSSNVTGGARGIVSW 345
            YG LG         +   PV +        I++G  H LA+              I SW
Sbjct: 293 QYGNLGNGIISPANTVQSVPVKVEGLSKIKQIANGRDHILALTSDGK---------IYSW 343

Query: 346 GWNRSSQLGRMGPDN 360
           G N S QLG  G  N
Sbjct: 344 GLNASGQLGIGGNGN 358



 Score = 62.4 bits (150), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 65/243 (26%), Positives = 108/243 (44%), Gaps = 51/243 (20%)

Query: 65  DVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALES---RAT----WNDPKRVEGL- 116
           D+ S+     +S+A++ NG V+ WG N++ QLG G   +   RA+       P  + G+ 
Sbjct: 151 DIFSIHFNQNNSMAISQNGRVYTWGANSKGQLGIGNNNTDPARASDPGNRQPPTEIPGIN 210

Query: 117 DQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKD--ITEAIVPSRVEALAGEKI 174
           D V     F   +V   +  DG++  +G++  GQLG G++     +   + V  +    +
Sbjct: 211 DAVMGAYGFNHALV---LKSDGTVVAFGQNNVGQLGNGENNLNRNSFSSNPVNVVQLRNV 267

Query: 175 VKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSST 234
           ++V  G  H+ A TE+G+++ WG +   + GNLG  +                  IS + 
Sbjct: 268 IQVIAGSEHSAALTENGEVYIWGRN---QYGNLGNGI------------------ISPAN 306

Query: 235 IEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYG 294
             ++  +  EG+ K K                  IA G DH L L  +G + S G N  G
Sbjct: 307 TVQSVPVKVEGLSKIK-----------------QIANGRDHILALTSDGKIYSWGLNASG 349

Query: 295 QLG 297
           QLG
Sbjct: 350 QLG 352


>gi|47214261|emb|CAG01938.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 1055

 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 49/140 (35%), Positives = 74/140 (52%), Gaps = 2/140 (1%)

Query: 66  VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAF 125
           +T VS G  HS+AV   G V+AWG  +  QLG G  E  A    P+ ++ L    +    
Sbjct: 85  ITLVSCGQAHSMAVNEQGQVFAWGAGDGGQLGLGTTE--AAVRIPRLIKRLCDHRIAQVM 142

Query: 126 ASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHAL 185
                  A+  DG L+ WG++  GQLGLGK     + P  +++LAG  + K++ G  H+ 
Sbjct: 143 CGNQHCIALSKDGQLFTWGQNTSGQLGLGKGEPSKLFPQPLKSLAGIPLAKITAGGDHSF 202

Query: 186 AQTEDGKLFGWGYSADGRIG 205
           A +  G +FGWG +  G++G
Sbjct: 203 ALSLSGAVFGWGKNKAGQLG 222



 Score = 80.5 bits (197), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 73/275 (26%), Positives = 113/275 (41%), Gaps = 50/275 (18%)

Query: 71  AGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVV 130
            G  HS+ + ++G+V+  G N     G G L        P+ V  LD   +         
Sbjct: 40  CGGQHSVFLLHDGSVYTCGSN-----GCGQLGHNKPGTSPELVGALDTQRITLVSCGQAH 94

Query: 131 SSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTED 190
           S A+ + G ++ WG    GQLGLG       +P  ++ L   +I +V  G  H +A ++D
Sbjct: 95  SMAVNEQGQVFAWGAGDGGQLGLGTTEAAVRIPRLIKRLCDHRIAQVMCGNQHCIALSKD 154

Query: 191 GKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEK 250
           G+LF WG +  G++G LGK                           +  KL  + ++   
Sbjct: 155 GQLFTWGQNTSGQLG-LGKG--------------------------EPSKLFPQPLKS-- 185

Query: 251 YMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLG-REKQDMGMFPVD 309
                     + G+ +  I  G DHS  L  +G +   G N  GQLG  + QD  + P  
Sbjct: 186 ----------LAGIPLAKITAGGDHSFALSLSGAVFGWGKNKAGQLGLNDIQDRAV-PCH 234

Query: 310 INF----HPVSISSGLGHSLAICEVRSSNVTGGAR 340
           I F      V IS G  H+ A+ +VR  + +   R
Sbjct: 235 IKFLRSQKVVHISCGDEHTAALTKVRIRSASQCFR 269



 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 53/166 (31%), Positives = 84/166 (50%), Gaps = 16/166 (9%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGL-----PSDVTSVSAGHYHSLAVTNNG 83
           V ++G G  G LGL T+   V        R+P L        +  V  G+ H +A++ +G
Sbjct: 104 VFAWGAGDGGQLGLGTTEAAV--------RIPRLIKRLCDHRIAQVMCGNQHCIALSKDG 155

Query: 84  AVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVW 143
            ++ WG+N   QLG G  E    +  P+ ++ L  + +    A G  S A+   G+++ W
Sbjct: 156 QLFTWGQNTSGQLGLGKGEPSKLF--PQPLKSLAGIPLAKITAGGDHSFALSLSGAVFGW 213

Query: 144 GKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTE 189
           GK+K GQLGL  DI +  VP  ++ L  +K+V +S G  H  A T+
Sbjct: 214 GKNKAGQLGLN-DIQDRAVPCHIKFLRSQKVVHISCGDEHTAALTK 258



 Score = 62.8 bits (151), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 72/278 (25%), Positives = 113/278 (40%), Gaps = 64/278 (23%)

Query: 85  VWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWG 144
           +  WG+  + QLG      R +  +P+         +  A   G  S  +  DGS++  G
Sbjct: 1   MLCWGKAKDGQLGIEV--ERNSMFEPRNCNVFSGRGLKEAVCGGQHSVFLLHDGSVYTCG 58

Query: 145 KSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRI 204
            +  GQLG  K  T    P  V AL  ++I  VS G  H++A  E G++F WG    G++
Sbjct: 59  SNGCGQLGHNKPGTS---PELVGALDTQRITLVSCGQAHSMAVNEQGQVFAWGAGDGGQL 115

Query: 205 GNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGV 264
           G LG                         T E A ++                P L++ +
Sbjct: 116 G-LG-------------------------TTEAAVRI----------------PRLIKRL 133

Query: 265 ---EVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREK-QDMGMFPVDIN----FHPVS 316
               +  + CG  H + L ++G L + G N  GQLG  K +   +FP  +          
Sbjct: 134 CDHRIAQVMCGNQHCIALSKDGQLFTWGQNTSGQLGLGKGEPSKLFPQPLKSLAGIPLAK 193

Query: 317 ISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLG 354
           I++G  HS A+      +++G   G   WG N++ QLG
Sbjct: 194 ITAGGDHSFAL------SLSGAVFG---WGKNKAGQLG 222



 Score = 52.4 bits (124), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 71/299 (23%), Positives = 117/299 (39%), Gaps = 83/299 (27%)

Query: 29  VVSFGDGSQGALGL----PTSLTGVGGDAYEPTR-VPGLPSDVTSVSAGHYHSLAVTNNG 83
           + ++G  + G LGL    P+ L        +P + + G+P  +  ++AG  HS A++ +G
Sbjct: 157 LFTWGQNTSGQLGLGKGEPSKLFP------QPLKSLAGIP--LAKITAGGDHSFALSLSG 208

Query: 84  AVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNV-C-----AAFASGVVSSA---- 133
           AV+ WG+N   QLG   ++ RA     K +     V++ C     AA     + SA    
Sbjct: 209 AVFGWGKNKAGQLGLNDIQDRAVPCHIKFLRSQKVVHISCGDEHTAALTKVRIRSASQCF 268

Query: 134 -----------------------------IGDDGSLWVWGKSKRGQLGLGKDITEAIVPS 164
                                        +  DG L+ +G    GQLG G    E ++P 
Sbjct: 269 RTSGGRCSNPFFCQRIGCSHSTRVTILLWLFQDGGLFTFGDGSWGQLGHGSTSNE-LLPR 327

Query: 165 RVEALAGEKIVKVSFGWGHALA-QTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRS 223
           RV  L G ++ +++ G  H LA     G ++ +G ++ G++G    + E       I+  
Sbjct: 328 RVLELMGTEVSQITCGRHHTLAFAPSSGVVYAFGGNSHGQLGTGELSAEKCLYPVKINLL 387

Query: 224 SESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRN 282
           S ++    S                +KY              V  I CG DHS +L  N
Sbjct: 388 SGNNHRTDS----------------KKY-------------SVTKITCGGDHSFLLYSN 417


>gi|375010994|ref|YP_004987982.1| Regulator of chromosome condensation (RCC1) repeat protein
           [Owenweeksia hongkongensis DSM 17368]
 gi|359346918|gb|AEV31337.1| Regulator of chromosome condensation (RCC1) repeat protein
           [Owenweeksia hongkongensis DSM 17368]
          Length = 440

 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 99/365 (27%), Positives = 154/365 (42%), Gaps = 72/365 (19%)

Query: 1   MRLLKSVVHNHVNVLTSRIFMRSASGTAVVSFGDGSQGALGLPTSLTGVGGDAYE----P 56
           +R L  ++   ++  T+   + + +G A+V   DG    +G   +   +G   YE    P
Sbjct: 3   IRKLLFILLTSLSFCTAAQMVDAGNGHAIVLDKDGKVFTMG-RNNYGQIGDSTYEDHNTP 61

Query: 57  TRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGL 116
             V  LP  +  ++ G+ HSLA+   G VWAWGRNN  QLG         +N P+ V  +
Sbjct: 62  YHVERLPK-IKIIARGYDHSLAIDEQGRVWAWGRNNYGQLGSAI---PIDFNTPQLV--V 115

Query: 117 DQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGK----DITEAIVPSRVEALAG- 171
           +  +  +       + A+ +DG++W WG +  G+LG G         ++V      L G 
Sbjct: 116 NHRDFISVEGGHWHTVALKEDGTVWTWGHNFYGELGDGTREHSQYPRSVVKKDKTTLQGI 175

Query: 172 EKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEIS 231
            KIV V +   H LA  ++G+++ WG +  G +G+    ++                   
Sbjct: 176 VKIVSVGY---HTLALDKNGEVYSWGSNDFGELGHFHNVIQ------------------- 213

Query: 232 SSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSN 291
                 A+K+  EG++  K                  IA G+ HS+ +  NG L   GS+
Sbjct: 214 ----HYAEKV--EGLQNIK-----------------SIAVGWHHSVAINENGELFMWGSD 250

Query: 292 VYGQLGREKQDMGMFPVDINFHP--VSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNR 349
              Q+     D     V I+  P  V I+ G  HSLAI E      TG   G   WG NR
Sbjct: 251 PSTQVRESTSDHFNSIVKIDSLPPMVKIACGSWHSLAIDE------TGQVWG---WGNNR 301

Query: 350 SSQLG 354
              LG
Sbjct: 302 YGMLG 306



 Score = 54.3 bits (129), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 47/187 (25%), Positives = 86/187 (45%), Gaps = 13/187 (6%)

Query: 58  RVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLD 117
           +V GL  ++ S++ G +HS+A+  NG ++ WG +   Q+        +T +    +  +D
Sbjct: 218 KVEGL-QNIKSIAVGWHHSVAINENGELFMWGSDPSTQV------RESTSDHFNSIVKID 270

Query: 118 QVNVCAAFASGVVSS-AIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVK 176
            +      A G   S AI + G +W WG ++ G LG  KD      P ++    G  I +
Sbjct: 271 SLPPMVKIACGSWHSLAIDETGQVWGWGNNRYGMLGT-KDTISYTYPKKIPGFKG--IEE 327

Query: 177 VSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIE 236
           +  G   +LA  + G  + +G +A G+ G    A    P  + +D S E   E++ + + 
Sbjct: 328 IGGGCFQSLAIDKKGDFYTFGGNASGQQGQGDFAYIFVP--TKLDLSLEPKGEVAQAEMG 385

Query: 237 KAQKLVS 243
           K    ++
Sbjct: 386 KENDAIA 392



 Score = 38.9 bits (89), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 35/106 (33%), Positives = 50/106 (47%), Gaps = 17/106 (16%)

Query: 265 EVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFHP--VSISSGLG 322
           ++VD   G  H++VL ++G + + G N YGQ+G    +    P  +   P    I+ G  
Sbjct: 21  QMVDAGNG--HAIVLDKDGKVFTMGRNNYGQIGDSTYEDHNTPYHVERLPKIKIIARGYD 78

Query: 323 HSLAICEVRSSNVTGGARGIV-SWGWNRSSQLGRMGP--DNVPLVV 365
           HSLAI E          +G V +WG N   QLG   P   N P +V
Sbjct: 79  HSLAIDE----------QGRVWAWGRNNYGQLGSAIPIDFNTPQLV 114


>gi|417762592|ref|ZP_12410581.1| chromosome condensation regulator RCC1 repeat protein [Leptospira
           interrogans str. 2002000624]
 gi|417775095|ref|ZP_12422955.1| chromosome condensation regulator RCC1 repeat protein [Leptospira
           interrogans str. 2002000621]
 gi|418671556|ref|ZP_13232907.1| chromosome condensation regulator RCC1 repeat protein [Leptospira
           interrogans str. 2002000623]
 gi|409941585|gb|EKN87213.1| chromosome condensation regulator RCC1 repeat protein [Leptospira
           interrogans str. 2002000624]
 gi|410575192|gb|EKQ38214.1| chromosome condensation regulator RCC1 repeat protein [Leptospira
           interrogans str. 2002000621]
 gi|410581515|gb|EKQ49325.1| chromosome condensation regulator RCC1 repeat protein [Leptospira
           interrogans str. 2002000623]
          Length = 506

 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 88/295 (29%), Positives = 137/295 (46%), Gaps = 30/295 (10%)

Query: 29  VVSFGDGSQGALGLPTSLTGVG-----GDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNG 83
           V ++G  S+G LG+  + T        G+   PT +PG+ +D    + G  H+L + ++G
Sbjct: 199 VYTWGANSKGQLGIGNNNTDPARASDPGNRQPPTEIPGI-NDAVMGAYGFNHALVLKSDG 257

Query: 84  AVWAWGRNNEVQLGRGA--LESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLW 141
            V A+G+NN  QLG G   L   +  ++P  V  L   NV    A    S+A+ ++G ++
Sbjct: 258 TVVAFGQNNVGQLGNGENNLNRNSFSSNPVNVVQLR--NVIQVIAGSEHSAALTENGEVY 315

Query: 142 VWGKSKRGQLGLG---KDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGY 198
           +WG+++ G LG G      T   VP +VE L+  KI +++ G  H LA T DGK++ WG 
Sbjct: 316 IWGRNQYGNLGNGIISPANTVQSVPVKVEGLS--KIKQIANGRDHILALTSDGKIYSWGL 373

Query: 199 SADGRIGNLGKALESSPLDSNIDRSSESDQEI-----SSSTIEKAQKLVSEGME------ 247
           +A G++G  G              + +    I      S  I K  ++   G        
Sbjct: 374 NASGQLGIGGNGNPPPTPIPTQILNIQDVASIWAGGTQSFAILKNGEVKGWGANGNMASL 433

Query: 248 --KEKYMPIIWEPF-LVEGVE-VVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGR 298
              E     ++EP   V G++ VV   CG  H+  L  NG +   G N  G LGR
Sbjct: 434 ALGESNTQKVYEPNKAVVGIDNVVHFGCGATHNFALLGNGEIYGWGWNFKGSLGR 488



 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 82/315 (26%), Positives = 126/315 (40%), Gaps = 78/315 (24%)

Query: 67  TSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRG-----ALESRATWNDPKRVEGLDQVNV 121
           T +SAG  HS  + N G ++  GRNN  QLG G      +  R    DP R       ++
Sbjct: 129 TKLSAGGAHSGFLIN-GELYTVGRNNFGQLGTGISTGDGINDRIVKVDPIR-------DI 180

Query: 122 CAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSR----------VEALAG 171
            +   +   S AI  +G ++ WG + +GQLG+G + T+   P+R           E    
Sbjct: 181 FSIHFNQNNSMAISQNGRVYTWGANSKGQLGIGNNNTD---PARASDPGNRQPPTEIPGI 237

Query: 172 EKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEIS 231
              V  ++G+ HAL    DG +  +G +  G++GN          ++N++R+S S   ++
Sbjct: 238 NDAVMGAYGFNHALVLKSDGTVVAFGQNNVGQLGN---------GENNLNRNSFSSNPVN 288

Query: 232 SSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSN 291
                                       +V+   V+ +  G +HS  L  NG +   G N
Sbjct: 289 ----------------------------VVQLRNVIQVIAGSEHSAALTENGEVYIWGRN 320

Query: 292 VYGQLGR----EKQDMGMFPVDIN--FHPVSISSGLGHSLAICEVRSSNVTGGARGIVSW 345
            YG LG         +   PV +        I++G  H LA+              I SW
Sbjct: 321 QYGNLGNGIISPANTVQSVPVKVEGLSKIKQIANGRDHILALTSDGK---------IYSW 371

Query: 346 GWNRSSQLGRMGPDN 360
           G N S QLG  G  N
Sbjct: 372 GLNASGQLGIGGNGN 386



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 65/243 (26%), Positives = 108/243 (44%), Gaps = 51/243 (20%)

Query: 65  DVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALES---RAT----WNDPKRVEGL- 116
           D+ S+     +S+A++ NG V+ WG N++ QLG G   +   RA+       P  + G+ 
Sbjct: 179 DIFSIHFNQNNSMAISQNGRVYTWGANSKGQLGIGNNNTDPARASDPGNRQPPTEIPGIN 238

Query: 117 DQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKD--ITEAIVPSRVEALAGEKI 174
           D V     F   +V   +  DG++  +G++  GQLG G++     +   + V  +    +
Sbjct: 239 DAVMGAYGFNHALV---LKSDGTVVAFGQNNVGQLGNGENNLNRNSFSSNPVNVVQLRNV 295

Query: 175 VKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSST 234
           ++V  G  H+ A TE+G+++ WG +   + GNLG  +                  IS + 
Sbjct: 296 IQVIAGSEHSAALTENGEVYIWGRN---QYGNLGNGI------------------ISPAN 334

Query: 235 IEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYG 294
             ++  +  EG+ K K                  IA G DH L L  +G + S G N  G
Sbjct: 335 TVQSVPVKVEGLSKIK-----------------QIANGRDHILALTSDGKIYSWGLNASG 377

Query: 295 QLG 297
           QLG
Sbjct: 378 QLG 380


>gi|225159176|ref|ZP_03725480.1| Alpha-tubulin suppressor and related RCC1 domain-containing
           protein-like protein [Diplosphaera colitermitum TAV2]
 gi|224802228|gb|EEG20496.1| Alpha-tubulin suppressor and related RCC1 domain-containing
           protein-like protein [Diplosphaera colitermitum TAV2]
          Length = 1690

 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 92/307 (29%), Positives = 130/307 (42%), Gaps = 66/307 (21%)

Query: 19  IFMRSASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLA 78
           +F+R+  GTA  S G    G LG  T +     D++ P ++    +DV +VS G +HSL 
Sbjct: 289 LFLRN-DGTAWAS-GSNYYGQLGDGTKI-----DSHTPVQIM---TDVAAVSVGAWHSLF 338

Query: 79  VTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDG 138
           +  +G  WA G N   +LG G   +R+T   P +V      +V A    G  S  +  DG
Sbjct: 339 LKVDGTAWASGYNYLGRLGDGTTTNRST---PVQV----MRDVAAISGGGSHSLFLKSDG 391

Query: 139 SLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGY 198
           + W  G +  GQLG G   T    P +V       +V +S G  H+L    DG  +  GY
Sbjct: 392 TAWATGYNGSGQLGNGT-TTNRSTPVQVM----RDVVAISAGSSHSLFLKSDGTAWATGY 446

Query: 199 SADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEP 258
           ++ G++GN      S+P+    D                                     
Sbjct: 447 NSSGQLGNGTTTNCSTPVQVMRD------------------------------------- 469

Query: 259 FLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFHPVSIS 318
                  VV I+ G  HSL L R+G + +CGSN YGQLG    D    PV +      IS
Sbjct: 470 -------VVAISAGSSHSLFLKRDGSVWACGSNEYGQLGDGTTDNRTTPVQVMNKATGIS 522

Query: 319 SGLGHSL 325
           +G  HSL
Sbjct: 523 AGNQHSL 529



 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 87/287 (30%), Positives = 130/287 (45%), Gaps = 39/287 (13%)

Query: 68   SVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFAS 127
            S+SAG  HSL +  +G VWA G N++ QLG G    R T   P +V   D   V A ++ 
Sbjct: 760  SISAGGNHSLFLKADGTVWASGYNSDGQLGDGTKTDRDT---PVQVMS-DVTAVSAGYSH 815

Query: 128  GVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQ 187
             +    +  DG++W  G +  GQLG G   T+   P  V+ ++G  ++ +S G  H+L  
Sbjct: 816  SLF---LKRDGTVWAVGSNNFGQLGDGTK-TDRSTP--VQTMSG--VMAISAGDSHSLFL 867

Query: 188  TEDGKLFGWGYSADGRIGNLGKALESSPLD--SNIDRSSESDQEISSSTIEKAQKLV-SE 244
              DG ++  G +  GR+G+      S+P+    N+   S      S S   KA   V + 
Sbjct: 868  KRDGTVWASGINESGRLGDGTTTNRSTPVQIMGNVAAISAGG---SHSLFLKADGTVWTT 924

Query: 245  GMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLG---REKQ 301
            G   E Y P+          EV  I+ G  HSL L  +G   + G N YGQLG   R K+
Sbjct: 925  GWTFENYAPVHIMS------EVTAISAGTSHSLYLKNDGSAWASGYNYYGQLGDGTRTKR 978

Query: 302  D---MGMFPV---------DINFHPVSISSGLGHSLAICEVRSSNVT 336
            D     + PV         D++F  V +      +L I    ++ +T
Sbjct: 979  DEPVQAIAPVPTRVIALSGDLSFDSVIVGQTATQTLTISNTGTAFLT 1025



 Score = 71.6 bits (174), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 79/278 (28%), Positives = 125/278 (44%), Gaps = 32/278 (11%)

Query: 59  VPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQ 118
           +P   S + +VSAG+ HSL +++NG VW  G N+  QLG G    R+    P ++   D 
Sbjct: 225 IPAAGSSIVAVSAGN-HSLFLSSNGIVWGSGWNDG-QLGDGTTTHRSI---PVQITS-DG 278

Query: 119 VNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVS 178
           V + A+    +    + +DG+ W  G +  GQLG G  I ++  P ++       +  VS
Sbjct: 279 VAISASLGHSLF---LRNDGTAWASGSNYYGQLGDGTKI-DSHTPVQIMT----DVAAVS 330

Query: 179 FGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSS-----------ESD 227
            G  H+L    DG  +  GY+  GR+G+      S+P+    D ++           +SD
Sbjct: 331 VGAWHSLFLKVDGTAWASGYNYLGRLGDGTTTNRSTPVQVMRDVAAISGGGSHSLFLKSD 390

Query: 228 QEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLS 287
               ++    + +L   G    +  P+          +VV I+ G  HSL L  +G   +
Sbjct: 391 GTAWATGYNGSGQL-GNGTTTNRSTPVQVMR------DVVAISAGSSHSLFLKSDGTAWA 443

Query: 288 CGSNVYGQLGREKQDMGMFPVDINFHPVSISSGLGHSL 325
            G N  GQLG         PV +    V+IS+G  HSL
Sbjct: 444 TGYNSSGQLGNGTTTNCSTPVQVMRDVVAISAGSSHSL 481



 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 71/251 (28%), Positives = 106/251 (42%), Gaps = 56/251 (22%)

Query: 75  HSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAI 134
           HSL + N+G VWA G N   QLG G   +R+T      V+ +D     +  A G  S  +
Sbjct: 719 HSLFLKNDGTVWASGSNGFGQLGDGTRTNRST-----PVQVMD--GAASISAGGNHSLFL 771

Query: 135 GDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLF 194
             DG++W  G +  GQLG G   T+   P +V +     +  VS G+ H+L    DG ++
Sbjct: 772 KADGTVWASGYNSDGQLGDGTK-TDRDTPVQVMS----DVTAVSAGYSHSLFLKRDGTVW 826

Query: 195 GWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPI 254
             G +  G++G+  K   S+P+           Q +S                       
Sbjct: 827 AVGSNNFGQLGDGTKTDRSTPV-----------QTMSG---------------------- 853

Query: 255 IWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFHP 314
                      V+ I+ G  HSL L R+G + + G N  G+LG         PV I  + 
Sbjct: 854 -----------VMAISAGDSHSLFLKRDGTVWASGINESGRLGDGTTTNRSTPVQIMGNV 902

Query: 315 VSISSGLGHSL 325
            +IS+G  HSL
Sbjct: 903 AAISAGGSHSL 913



 Score = 52.0 bits (123), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 52/196 (26%), Positives = 81/196 (41%), Gaps = 56/196 (28%)

Query: 64  SDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCA 123
           SDVT+VSAG+ HSL +  +G VWA G NN  QLG G    R+T   P +           
Sbjct: 804 SDVTAVSAGYSHSLFLKRDGTVWAVGSNNFGQLGDGTKTDRST---PVQT---------- 850

Query: 124 AFASGVVSSAIGD--------DGSLWVWGKSKRGQLGLGKDI---TEAIVPSRVEALAG- 171
              SGV++ + GD        DG++W  G ++ G+LG G      T   +   V A++  
Sbjct: 851 --MSGVMAISAGDSHSLFLKRDGTVWASGINESGRLGDGTTTNRSTPVQIMGNVAAISAG 908

Query: 172 -----------------------------EKIVKVSFGWGHALAQTEDGKLFGWGYSADG 202
                                         ++  +S G  H+L    DG  +  GY+  G
Sbjct: 909 GSHSLFLKADGTVWTTGWTFENYAPVHIMSEVTAISAGTSHSLYLKNDGSAWASGYNYYG 968

Query: 203 RIGNLGKALESSPLDS 218
           ++G+  +     P+ +
Sbjct: 969 QLGDGTRTKRDEPVQA 984



 Score = 46.2 bits (108), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 38/106 (35%), Positives = 53/106 (50%), Gaps = 10/106 (9%)

Query: 65  DVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAA 124
           DV ++SAG  HSL +  +G+VWA G N   QLG G  ++R T   P +V     +N    
Sbjct: 469 DVVAISAGSSHSLFLKRDGSVWACGSNEYGQLGDGTTDNRTT---PVQV-----MNKATG 520

Query: 125 FASGVVSSAIG-DDGSLWVWGKSKRGQLGLGKDIT-EAIVPSRVEA 168
            ++G   S     DG+ W  G +  G LG G  I   + V S +EA
Sbjct: 521 ISAGNQHSLFQRSDGTAWASGSNGSGALGDGTTIPRRSAVRSDIEA 566



 Score = 39.7 bits (91), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 22/51 (43%), Positives = 29/51 (56%), Gaps = 3/51 (5%)

Query: 54  YEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESR 104
           Y P  +    S+VT++SAG  HSL + N+G+ WA G N   QLG G    R
Sbjct: 931 YAPVHIM---SEVTAISAGTSHSLYLKNDGSAWASGYNYYGQLGDGTRTKR 978


>gi|45657342|ref|YP_001428.1| regulator of chromosome condensation [Leptospira interrogans
           serovar Copenhageni str. Fiocruz L1-130]
 gi|45600580|gb|AAS70065.1| regulator of chromosome condensation [Leptospira interrogans
           serovar Copenhageni str. Fiocruz L1-130]
          Length = 498

 Score = 87.0 bits (214), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 88/295 (29%), Positives = 137/295 (46%), Gaps = 30/295 (10%)

Query: 29  VVSFGDGSQGALGLPTSLTGVG-----GDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNG 83
           V ++G  S+G LG+  + T        G+   PT +PG+ +D    + G  H+L + ++G
Sbjct: 191 VYTWGANSKGQLGIGNNNTDPARASDPGNRQPPTEIPGI-NDAVMGAYGFNHALVLKSDG 249

Query: 84  AVWAWGRNNEVQLGRGA--LESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLW 141
            V A+G+NN  QLG G   L   +  ++P  V  L   NV    A    S+A+ ++G ++
Sbjct: 250 TVVAFGQNNVGQLGNGENNLNRNSFSSNPVNVVQLR--NVIQVIAGSEHSAALTENGEVY 307

Query: 142 VWGKSKRGQLGLG---KDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGY 198
           +WG+++ G LG G      T   VP +VE L+  KI +++ G  H LA T DGK++ WG 
Sbjct: 308 IWGRNQYGNLGNGIISPANTVQSVPVKVEGLS--KIKQIANGRDHILALTSDGKIYSWGL 365

Query: 199 SADGRIGNLGKALESSPLDSNIDRSSESDQEI-----SSSTIEKAQKLVSEGME------ 247
           +A G++G  G              + +    I      S  I K  ++   G        
Sbjct: 366 NASGQLGIGGNGNPPPTPIPTQILNIQDVASIWAGGTQSFAILKNGEVKGWGANGNMASL 425

Query: 248 --KEKYMPIIWEPF-LVEGVE-VVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGR 298
              E     ++EP   V G++ VV   CG  H+  L  NG +   G N  G LGR
Sbjct: 426 ALGESNTQKVYEPNKAVVGIDNVVHFGCGATHNFALLGNGEIYGWGWNFKGSLGR 480



 Score = 65.9 bits (159), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 82/315 (26%), Positives = 126/315 (40%), Gaps = 78/315 (24%)

Query: 67  TSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRG-----ALESRATWNDPKRVEGLDQVNV 121
           T +SAG  HS  + N G ++  GRNN  QLG G      +  R    DP R       ++
Sbjct: 121 TKLSAGGAHSGFLIN-GELYTVGRNNFGQLGTGISTGDGINDRIVKVDPIR-------DI 172

Query: 122 CAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSR----------VEALAG 171
            +   +   S AI  +G ++ WG + +GQLG+G + T+   P+R           E    
Sbjct: 173 FSIHFNQNNSMAISQNGRVYTWGANSKGQLGIGNNNTD---PARASDPGNRQPPTEIPGI 229

Query: 172 EKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEIS 231
              V  ++G+ HAL    DG +  +G +  G++GN          ++N++R+S S   ++
Sbjct: 230 NDAVMGAYGFNHALVLKSDGTVVAFGQNNVGQLGN---------GENNLNRNSFSSNPVN 280

Query: 232 SSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSN 291
                                       +V+   V+ +  G +HS  L  NG +   G N
Sbjct: 281 ----------------------------VVQLRNVIQVIAGSEHSAALTENGEVYIWGRN 312

Query: 292 VYGQLGR----EKQDMGMFPVDIN--FHPVSISSGLGHSLAICEVRSSNVTGGARGIVSW 345
            YG LG         +   PV +        I++G  H LA+              I SW
Sbjct: 313 QYGNLGNGIISPANTVQSVPVKVEGLSKIKQIANGRDHILALTSDGK---------IYSW 363

Query: 346 GWNRSSQLGRMGPDN 360
           G N S QLG  G  N
Sbjct: 364 GLNASGQLGIGGNGN 378



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 65/243 (26%), Positives = 108/243 (44%), Gaps = 51/243 (20%)

Query: 65  DVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALES---RAT----WNDPKRVEGL- 116
           D+ S+     +S+A++ NG V+ WG N++ QLG G   +   RA+       P  + G+ 
Sbjct: 171 DIFSIHFNQNNSMAISQNGRVYTWGANSKGQLGIGNNNTDPARASDPGNRQPPTEIPGIN 230

Query: 117 DQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKD--ITEAIVPSRVEALAGEKI 174
           D V     F   +V   +  DG++  +G++  GQLG G++     +   + V  +    +
Sbjct: 231 DAVMGAYGFNHALV---LKSDGTVVAFGQNNVGQLGNGENNLNRNSFSSNPVNVVQLRNV 287

Query: 175 VKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSST 234
           ++V  G  H+ A TE+G+++ WG +   + GNLG  +                  IS + 
Sbjct: 288 IQVIAGSEHSAALTENGEVYIWGRN---QYGNLGNGI------------------ISPAN 326

Query: 235 IEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYG 294
             ++  +  EG+ K K                  IA G DH L L  +G + S G N  G
Sbjct: 327 TVQSVPVKVEGLSKIK-----------------QIANGRDHILALTSDGKIYSWGLNASG 369

Query: 295 QLG 297
           QLG
Sbjct: 370 QLG 372


>gi|300789124|ref|YP_003769415.1| Rhs family protein [Amycolatopsis mediterranei U32]
 gi|299798638|gb|ADJ49013.1| Rhs family protein [Amycolatopsis mediterranei U32]
          Length = 1532

 Score = 87.0 bits (214), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 97/334 (29%), Positives = 139/334 (41%), Gaps = 37/334 (11%)

Query: 52  DAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPK 111
           DA  P +V GL S  T++++G Y   AV ++G  WAWG N    LG G    R+T   P 
Sbjct: 11  DAKTPAQVSGLTSS-TAIASGLYTGYAVKSDGTAWAWGYNTYGGLGDGTTTDRST---PV 66

Query: 112 RVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAG 171
           RV  L   NV A         A+  DG++W WG    G+LG G    ++  P RV +L G
Sbjct: 67  RVGTL--TNVIAVAGGSFTGYALKSDGTVWAWGNGYDGELGNGG-TADSHTPVRVGSLTG 123

Query: 172 EKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLD-------SNIDRSS 224
              +  S G G+AL    DG ++ WG ++ G+IG+       +P+        S I  +S
Sbjct: 124 VTAIAGSGGNGYALK--SDGTVWSWGINSSGQIGDGTTTTRLAPVQVKNLPGVSAIAAAS 181

Query: 225 ESDQEI---SSSTI----EKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSL 277
            S+      S  T+    + A   +  G         +             IA G     
Sbjct: 182 GSETAYAVKSDGTVWSWGDNASGQLGNGSTAANTSTAVQVKNFTGATA---IAGGLSDGY 238

Query: 278 VLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDIN-FHPVSISSGLGHSLAICEVRSSNVT 336
            L  +G + S G   YGQLG          V ++    ++  +  GHS       ++   
Sbjct: 239 ALKSDGTVWSWGDGSYGQLGNGGTTQSAVAVQVSGLTGIAAIAAGGHS-----AYATRAD 293

Query: 337 GGARGIVSWGWNRSSQLGRMGPDN--VPLVVEGL 368
           G AR   SWG N + QLG     N   P+VV  L
Sbjct: 294 GTAR---SWGSNSNGQLGNGTTTNAKTPVVVSTL 324



 Score = 72.8 bits (177), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 54/179 (30%), Positives = 89/179 (49%), Gaps = 11/179 (6%)

Query: 31  SFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGR 90
           ++G+G  G LG      G   D++ P RV  L + VT+++    +  A+ ++G VW+WG 
Sbjct: 95  AWGNGYDGELG-----NGGTADSHTPVRVGSL-TGVTAIAGSGGNGYALKSDGTVWSWGI 148

Query: 91  NNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQ 150
           N+  Q+G G   +R     P +V+ L  V+  AA +    + A+  DG++W WG +  GQ
Sbjct: 149 NSSGQIGDGTTTTRLA---PVQVKNLPGVSAIAAASGSETAYAVKSDGTVWSWGDNASGQ 205

Query: 151 LGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGK 209
           LG G          +V+   G   +      G+AL    DG ++ WG  + G++GN G 
Sbjct: 206 LGNGSTAANTSTAVQVKNFTGATAIAGGLSDGYALK--SDGTVWSWGDGSYGQLGNGGT 262



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 62/218 (28%), Positives = 94/218 (43%), Gaps = 26/218 (11%)

Query: 95  QLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSS-AIGDDGSLWVWGKSKRGQLGL 153
           QLG G      T   P +V GL       A ASG+ +  A+  DG+ W WG +  G LG 
Sbjct: 3   QLGNGTTIDAKT---PAQVSGLTS---STAIASGLYTGYAVKSDGTAWAWGYNTYGGLGD 56

Query: 154 GKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALES 213
           G   T+   P RV  L    ++ V+ G     A   DG ++ WG   DG +GN G A   
Sbjct: 57  GT-TTDRSTPVRVGTL--TNVIAVAGGSFTGYALKSDGTVWAWGNGYDGELGNGGTADSH 113

Query: 214 SPLD-------SNIDRSS------ESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFL 260
           +P+        + I  S       +SD  + S  I  + + + +G    +  P+  +   
Sbjct: 114 TPVRVGSLTGVTAIAGSGGNGYALKSDGTVWSWGINSSGQ-IGDGTTTTRLAPV--QVKN 170

Query: 261 VEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGR 298
           + GV  +  A G + +  +  +G + S G N  GQLG 
Sbjct: 171 LPGVSAIAAASGSETAYAVKSDGTVWSWGDNASGQLGN 208



 Score = 46.2 bits (108), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 38/121 (31%), Positives = 54/121 (44%), Gaps = 6/121 (4%)

Query: 66  VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAF 125
            T+++ G     A+ ++G VW+WG  +  QLG G     A      +V GL    + A  
Sbjct: 227 ATAIAGGLSDGYALKSDGTVWSWGDGSYGQLGNGGTTQSAV---AVQVSGL--TGIAAIA 281

Query: 126 ASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHAL 185
           A G  + A   DG+   WG +  GQLG G   T A  P  V  L     V  ++   +AL
Sbjct: 282 AGGHSAYATRADGTARSWGSNSNGQLGNGT-TTNAKTPVVVSTLTSVIAVAANYNSAYAL 340

Query: 186 A 186
           A
Sbjct: 341 A 341


>gi|146298949|ref|YP_001193540.1| regulator of chromosome condensation, RCC1 [Flavobacterium
           johnsoniae UW101]
 gi|146153367|gb|ABQ04221.1| regulator of chromosome condensation, RCC1 [Flavobacterium
           johnsoniae UW101]
          Length = 1679

 Score = 87.0 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 83/296 (28%), Positives = 128/296 (43%), Gaps = 61/296 (20%)

Query: 61  GLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVN 120
           G  +D  +++AGH H++A+ N+G +WAWG N   QLG G    R   N P ++ G D  N
Sbjct: 117 GTENDWQTIAAGHGHTVALKNDGTLWAWGNNFSGQLGNGTSFDR---NTPTKI-GSDS-N 171

Query: 121 VCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFG 180
             A  A G+ + A+  DG+LW WGK+  G LG G   T   VP ++      K +    G
Sbjct: 172 WLAISAGGLYTIALKKDGTLWAWGKNTYGTLGDGT-TTNNRVPKQIGTDTDWKTIAA--G 228

Query: 181 WGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQK 240
             H +A   DG L+ WG +  G +G+          ++ ID+   +  +I + T  K+  
Sbjct: 229 SDHTIAIKNDGSLWIWGKNTYGALGD----------NTTIDKIVPT--KIGTDTDWKS-- 274

Query: 241 LVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREK 300
             +EG                          G D+++ +  +G L + G N  G  G   
Sbjct: 275 --AEG--------------------------GVDYTVAIKTDGTLWAWGYNADGVFGNGS 306

Query: 301 QDMGMFPVDINFHP--VSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLG 354
           +   + PV I        +S G  H++A+    S         + SWG N   QLG
Sbjct: 307 KINSLIPVQIGTEKNWQMVSGGSVHTVAVKTDES---------LWSWGNNSYGQLG 353



 Score = 85.5 bits (210), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 79/301 (26%), Positives = 131/301 (43%), Gaps = 34/301 (11%)

Query: 68  SVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFAS 127
           + +AG+ H++AV N+G +W WG N+E QLG     + A  N P ++   +     AA   
Sbjct: 23  TAAAGYSHTVAVRNDGTLWTWGNNDEGQLGN---STPAAINIPTKMGTANNWKTAAAGWG 79

Query: 128 GVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQ 187
             V  A+  DG+LW WG  + GQLG G   T   +P ++      + +    G GH +A 
Sbjct: 80  HTV--ALKTDGTLWAWGYGRLGQLGNGNYNTNFNLPQQIGTENDWQTIAA--GHGHTVAL 135

Query: 188 TEDGKLFGWGYSADGRIGNLGKALESSP--LDSNIDRSSESDQEISSSTIEKAQKL---- 241
             DG L+ WG +  G++GN      ++P  + S+ +  + S   + +  ++K   L    
Sbjct: 136 KNDGTLWAWGNNFSGQLGNGTSFDRNTPTKIGSDSNWLAISAGGLYTIALKKDGTLWAWG 195

Query: 242 ------VSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQ 295
                 + +G      +P      +    +   IA G DH++ +  +G L   G N YG 
Sbjct: 196 KNTYGTLGDGTTTNNRVP----KQIGTDTDWKTIAAGSDHTIAIKNDGSLWIWGKNTYGA 251

Query: 296 LGREKQDMGMFPVDINFHP--VSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQL 353
           LG       + P  I       S   G+ +++AI        T G   + +WG+N     
Sbjct: 252 LGDNTTIDKIVPTKIGTDTDWKSAEGGVDYTVAI-------KTDGT--LWAWGYNADGVF 302

Query: 354 G 354
           G
Sbjct: 303 G 303



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 47/147 (31%), Positives = 70/147 (47%), Gaps = 13/147 (8%)

Query: 32  FGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRN 91
           +G  + GALG  T++     D   PT++ G  +D  S   G  +++A+  +G +WAWG N
Sbjct: 244 WGKNTYGALGDNTTI-----DKIVPTKI-GTDTDWKSAEGGVDYTVAIKTDGTLWAWGYN 297

Query: 92  NEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQL 151
            +   G G+       N    V+   + N        V + A+  D SLW WG +  GQL
Sbjct: 298 ADGVFGNGS-----KINSLIPVQIGTEKNWQMVSGGSVHTVAVKTDESLWSWGNNSYGQL 352

Query: 152 GLGKDITEAIVPSRVEALAGEKIVKVS 178
           G G  I E  +P+ +   AG  IV VS
Sbjct: 353 GDGTSI-EKNIPTLLNC-AGSLIVTVS 377


>gi|295789055|ref|NP_001171421.1| X-linked retinitis pigmentosa GTPase regulator isoform 1 [Mus
           musculus]
          Length = 1039

 Score = 87.0 bits (214), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 86/322 (26%), Positives = 154/322 (47%), Gaps = 36/322 (11%)

Query: 27  TAVVS-------FGDGSQGALGLPTSLTGVGGDAYEPTRVPGL-PSDVTSVSAGHYHSLA 78
           TA+V+       FG  + G LGL     G      +PT +  L P  V   + G  H+L 
Sbjct: 85  TAIVTGNNKLYMFGSNNWGQLGL-----GSKAAIIKPTCIKALKPEKVKLAACGRNHTLV 139

Query: 79  VTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDG 138
            T+ G V+A G NNE QLG G  + R T++        D +   +A A+   S+A+ +DG
Sbjct: 140 STDTGGVYAAGGNNEGQLGLGDTDDRDTFHQIVFFTPADTIKQLSAGAN--TSAALTEDG 197

Query: 139 SLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGY 198
            L++WG +  GQ+GL +D +   +P  V    G+ I  +S G+ H+   T DG+L+ +G 
Sbjct: 198 KLFMWGDNSEGQIGL-EDKSNVCIPHEV--TVGKPISWISCGYYHSAFVTMDGELYTFGE 254

Query: 199 SADGRIGNLGKALESSPLDSNIDRSSESDQEISS---STIEKAQKLV-SEGMEKE----- 249
             +G++G   + L +      +    E   +++     T+   +K+V + G+ +      
Sbjct: 255 PENGKLGLPNELLMNHRSPQRVLGIPERVIQVACGGGHTVVLTEKVVYAFGLGQFGQLGL 314

Query: 250 -KYMPIIWEPFLVEGV---EVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGM 305
             ++    EP ++E +   ++  I+CG +H+ ++   G+L + G   +G+LG     +GM
Sbjct: 315 GTFLFETSEPKIIERIKDQKICHISCGENHTALMTELGLLYTFGDGRHGKLG-----LGM 369

Query: 306 FPVDINFHPVSISSGLGHSLAI 327
                 F P   S+ L  ++ +
Sbjct: 370 ENFTNQFFPTLCSNFLRFAVQL 391



 Score = 64.7 bits (156), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 72/295 (24%), Positives = 115/295 (38%), Gaps = 68/295 (23%)

Query: 69  VSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASG 128
           +S G  H+  VT N  ++ +G NN  QLG G   S+A    P  ++ L    V  A    
Sbjct: 78  LSCGDEHTAIVTGNNKLYMFGSNNWGQLGLG---SKAAIIKPTCIKALKPEKVKLAACGR 134

Query: 129 VVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQT 188
             +    D G ++  G +  GQLGLG           V     + I ++S G   + A T
Sbjct: 135 NHTLVSTDTGGVYAAGGNNEGQLGLGDTDDRDTFHQIVFFTPADTIKQLSAGANTSAALT 194

Query: 189 EDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEK 248
           EDGKLF WG +++G+IG   K+    P +  + +                          
Sbjct: 195 EDGKLFMWGDNSEGQIGLEDKSNVCIPHEVTVGK-------------------------- 228

Query: 249 EKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLG---------RE 299
               PI W            I+CG+ HS  +  +G L + G    G+LG         R 
Sbjct: 229 ----PISW------------ISCGYYHSAFVTMDGELYTFGEPENGKLGLPNELLMNHRS 272

Query: 300 KQDMGMFPVDINFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLG 354
            Q +   P  +    + ++ G GH++ + E          + + ++G  +  QLG
Sbjct: 273 PQRVLGIPERV----IQVACGGGHTVVLTE----------KVVYAFGLGQFGQLG 313



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 42/158 (26%), Positives = 72/158 (45%), Gaps = 7/158 (4%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAW 88
           + +FG+   G LGLP  L     +   P RV G+P  V  V+ G  H++ +T    V+A+
Sbjct: 249 LYTFGEPENGKLGLPNELL---MNHRSPQRVLGIPERVIQVACGGGHTVVLTEK-VVYAF 304

Query: 89  GRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKR 148
           G     QLG G      +  +PK +E +    +C        ++ + + G L+ +G  + 
Sbjct: 305 GLGQFGQLGLGTFLFETS--EPKIIERIKDQKICHISCGENHTALMTELGLLYTFGDGRH 362

Query: 149 GQLGLG-KDITEAIVPSRVEALAGEKIVKVSFGWGHAL 185
           G+LGLG ++ T    P+         +  ++ G  H L
Sbjct: 363 GKLGLGMENFTNQFFPTLCSNFLRFAVQLIACGGCHML 400


>gi|432095555|gb|ELK26701.1| Secretion-regulating guanine nucleotide exchange factor, partial
           [Myotis davidii]
          Length = 442

 Score = 87.0 bits (214), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 67/191 (35%), Positives = 90/191 (47%), Gaps = 15/191 (7%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAW 88
           V+S G  S G LG+P       G    P  +  L  +V S++AG  H+LA T +G V+ W
Sbjct: 102 VLSCGSNSFGQLGVPHG----PGKCVVPQAIELLKEEVVSIAAGLRHALAATASGIVFQW 157

Query: 89  GRNNEVQLGRGALESRA----TWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWG 144
           G        R   E       T  +P RV GL+        A    S+++ D G L+VWG
Sbjct: 158 GTGLASSGRRLCPEQTLPLFLTAKEPGRVPGLENSKAICVVAGSDHSASLADSGELYVWG 217

Query: 145 KSKRGQLGLGKDITEAIVPSRVEA--LAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADG 202
            +K GQ  L        VP ++EA     EK+  V  GW H +AQT  GK+F WG +   
Sbjct: 218 SNKHGQ--LASQAAFLPVPQKIEAHCFQKEKVTAVWSGWTHLVAQTGTGKVFTWGRA--- 272

Query: 203 RIGNLGKALES 213
             G LG+ LES
Sbjct: 273 DYGQLGRKLES 283



 Score = 65.1 bits (157), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 86/339 (25%), Positives = 133/339 (39%), Gaps = 76/339 (22%)

Query: 33  GDGSQGALGLPTSLTGVGGDAYEPTRVPGL--PSDVTSVSAGHYHSLAVTNNGAVWAWGR 90
           G  S G LGL     G   D + P ++     P  V  ++ G  HS  VT+ G+++  G 
Sbjct: 1   GANSYGQLGL-----GHKEDVFLPQQLNDFCKPECVRRIAGGGGHSAVVTDGGSLFVCGL 55

Query: 91  NNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQ 150
           N + QLG G +E    +   K + G     V   +   ++   + ++G +   G +  GQ
Sbjct: 56  NKDGQLGLGHMEDVLYFTPCKSLIGCPIQQVACGWDFTII---LTENGQVLSCGSNSFGQ 112

Query: 151 LGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKA 210
           LG+     + +VP  +E L  E++V ++ G  HALA T  G +F WG             
Sbjct: 113 LGVPHGPGKCVVPQAIELLK-EEVVSIAAGLRHALAATASGIVFQWGTG----------- 160

Query: 211 LESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEG--MEKEKYMPIIW---EPFLVEGVE 265
                                         L S G  +  E+ +P+     EP  V G+E
Sbjct: 161 ------------------------------LASSGRRLCPEQTLPLFLTAKEPGRVPGLE 190

Query: 266 ---VVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFHP------VS 316
               + +  G DHS  L  +G L   GSN +GQL  +   + + P  I  H        +
Sbjct: 191 NSKAICVVAGSDHSASLADSGELYVWGSNKHGQLASQAAFLPV-PQKIEAHCFQKEKVTA 249

Query: 317 ISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGR 355
           + SG  H +A           G   + +WG     QLGR
Sbjct: 250 VWSGWTHLVA---------QTGTGKVFTWGRADYGQLGR 279



 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 64/235 (27%), Positives = 98/235 (41%), Gaps = 62/235 (26%)

Query: 144 GKSKRGQLGLGKDITEAIVPSRVEALAGEKIVK-VSFGWGHALAQTEDGKLFGWGYSADG 202
           G +  GQLGLG    +  +P ++      + V+ ++ G GH+   T+ G LF  G + DG
Sbjct: 1   GANSYGQLGLGHK-EDVFLPQQLNDFCKPECVRRIAGGGGHSAVVTDGGSLFVCGLNKDG 59

Query: 203 RIG--NLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFL 260
           ++G  ++   L  +P  S I                                        
Sbjct: 60  QLGLGHMEDVLYFTPCKSLI---------------------------------------- 79

Query: 261 VEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLG-REKQDMGMFPVDINF---HPVS 316
             G  +  +ACG+D +++L  NG +LSCGSN +GQLG        + P  I       VS
Sbjct: 80  --GCPIQQVACGWDFTIILTENGQVLSCGSNSFGQLGVPHGPGKCVVPQAIELLKEEVVS 137

Query: 317 ISSGLGHSLAICEVRSSNVTGGARGIV-SWGWNRSSQLGRMGPDN-VPLVVEGLE 369
           I++GL H+LA            A GIV  WG   +S   R+ P+  +PL +   E
Sbjct: 138 IAAGLRHALA----------ATASGIVFQWGTGLASSGRRLCPEQTLPLFLTAKE 182



 Score = 49.3 bits (116), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 61/232 (26%), Positives = 89/232 (38%), Gaps = 42/232 (18%)

Query: 26  GTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLP-SDVTSVSAGHYHSLAVTNNGA 84
           GT + S G        LP  LT     A EP RVPGL  S    V AG  HS ++ ++G 
Sbjct: 158 GTGLASSGRRLCPEQTLPLFLT-----AKEPGRVPGLENSKAICVVAGSDHSASLADSGE 212

Query: 85  VWAWGRNNEVQLGRGALESRATWNDPKRVEG--LDQVNVCAAFASGVVSSAIGDDGSLWV 142
           ++ WG N   QL   A    A    P+++E     +  V A ++      A    G ++ 
Sbjct: 213 LYVWGSNKHGQLASQA----AFLPVPQKIEAHCFQKEKVTAVWSGWTHLVAQTGTGKVFT 268

Query: 143 WGKSKRGQLGLGKDITEA-----------------IVPSRVEALAGEKIVKVSF------ 179
           WG++  GQLG   +  E                    PS +  L G   V  +F      
Sbjct: 269 WGRADYGQLGRKLESEEGWRPEKQGSPLPCSRPWESTPSSLHCLTGATEVSSAFLLPPFP 328

Query: 180 ---GWGHA----LAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSS 224
               W H+       T  G  + WG++  G  G+  +A   +P      +SS
Sbjct: 329 LTVSWCHSPGLGTRPTPGGACYSWGWNEHGMCGDGSEADVQAPKPVQALQSS 380


>gi|296196028|ref|XP_002745648.1| PREDICTED: E3 ISG15--protein ligase HERC5 [Callithrix jacchus]
          Length = 1024

 Score = 87.0 bits (214), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 68/228 (29%), Positives = 110/228 (48%), Gaps = 24/228 (10%)

Query: 24  ASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVP-------GLPSDVTSVSAGHYHS 76
           + G  + ++G    G LG+        G  +  T  P       G+P  +  +SAG  HS
Sbjct: 154 SKGGELFAWGQNLHGQLGV--------GRKFPSTTAPQIVEHLAGIP--LAQISAGEAHS 203

Query: 77  LAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGD 136
           +A++ +G +++WG+N   QLG    ES+   + P  +E LD   V      G  ++ +  
Sbjct: 204 MALSMSGNIYSWGKNEFGQLGLDHTESK---DSPSLIEALDNQKVEFLACGGSHTALLTQ 260

Query: 137 DGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTED-GKLFG 195
           DG L+ +G  K GQLG      E + P  V  LAG ++ +++ G  H LA   D GK+F 
Sbjct: 261 DGLLFTFGAGKHGQLGHNSTQNE-LRPCLVAELAGNRVTQIACGRWHTLAYVSDLGKVFS 319

Query: 196 WGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVS 243
           +G   +G++GN G   +  PL   +  SS  D +  S T EK   +++
Sbjct: 320 FGSGKEGQLGNGGTRDQLIPLPMKV--SSNEDLKFESHTSEKELIMIA 365



 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 53/151 (35%), Positives = 81/151 (53%), Gaps = 5/151 (3%)

Query: 66  VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAF 125
           +  ++ G YHSLA++  G ++AWG+N   QLG G      T   P+ VE L  + +    
Sbjct: 140 IIQITCGDYHSLALSKGGELFAWGQNLHGQLGVGRKFPSTT--APQIVEHLAGIPLAQIS 197

Query: 126 ASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAI-VPSRVEALAGEKIVKVSFGWGHA 184
           A    S A+   G+++ WGK++ GQLGL  D TE+   PS +EAL  +K+  ++ G  H 
Sbjct: 198 AGEAHSMALSMSGNIYSWGKNEFGQLGL--DHTESKDSPSLIEALDNQKVEFLACGGSHT 255

Query: 185 LAQTEDGKLFGWGYSADGRIGNLGKALESSP 215
              T+DG LF +G    G++G+     E  P
Sbjct: 256 ALLTQDGLLFTFGAGKHGQLGHNSTQNELRP 286



 Score = 45.1 bits (105), Expect = 0.055,   Method: Compositional matrix adjust.
 Identities = 36/120 (30%), Positives = 61/120 (50%), Gaps = 16/120 (13%)

Query: 260 LVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFH----PV 315
           +++  +++ I CG  HSL L + G L + G N++GQLG  ++        I  H    P+
Sbjct: 134 ILQEKKIIQITCGDYHSLALSKGGELFAWGQNLHGQLGVGRKFPSTTAPQIVEHLAGIPL 193

Query: 316 S-ISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLG--RMGPDNVPLVVEGLEGES 372
           + IS+G  HS+A+      +++G    I SWG N   QLG       + P ++E L+ + 
Sbjct: 194 AQISAGEAHSMAL------SMSG---NIYSWGKNEFGQLGLDHTESKDSPSLIEALDNQK 244



 Score = 42.7 bits (99), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 40/150 (26%), Positives = 74/150 (49%), Gaps = 20/150 (13%)

Query: 165 RVEALAGEK-IVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDR- 222
           R E++  EK I++++ G  H+LA ++ G+LF WG +  G++G +G+   S+     ++  
Sbjct: 130 RFESILQEKKIIQITCGDYHSLALSKGGELFAWGQNLHGQLG-VGRKFPSTTAPQIVEHL 188

Query: 223 -----SSESDQEISSSTIEKAQKLVSEGME----------KEKYMPIIWEPFLVEGVEVV 267
                +  S  E  S  +  +  + S G            + K  P + E    + VE  
Sbjct: 189 AGIPLAQISAGEAHSMALSMSGNIYSWGKNEFGQLGLDHTESKDSPSLIEALDNQKVEF- 247

Query: 268 DIACGFDHSLVLGRNGVLLSCGSNVYGQLG 297
            +ACG  H+ +L ++G+L + G+  +GQLG
Sbjct: 248 -LACGGSHTALLTQDGLLFTFGAGKHGQLG 276


>gi|327277954|ref|XP_003223728.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC4-like isoform
           2 [Anolis carolinensis]
          Length = 1060

 Score = 87.0 bits (214), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 81/288 (28%), Positives = 138/288 (47%), Gaps = 30/288 (10%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDA-YEPTRVPG-LPSDVTSVSAGHYHSLAVTNNGAVW 86
           ++ +G+ S G LGL     G+  +   EP R    L   V  V  G  H++ V ++G V+
Sbjct: 1   MLCWGNASFGQLGL----GGIDEEVVLEPRRCNFFLNKTVRDVGCGLRHTVFVLDDGTVY 56

Query: 87  AWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKS 146
             G N+  QLG      R     P++V  LD  N+ A       +  + D G ++ WG +
Sbjct: 57  TCGCNDLGQLGHEKSRKR-----PEQVGALDAQNIVAVSCGEAHTLTLNDKGQVYAWGFA 111

Query: 147 KRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGN 206
             GQLGL        VP  +++L+  +IV+V+ G+ H+LA ++  ++F WG +  G++G 
Sbjct: 112 ADGQLGLPGTEEYTRVPRNIKSLSDVQIVQVACGYYHSLALSKGSEVFSWGQNKHGQLG- 170

Query: 207 LGKAL--ESSP------LDSNIDRSSESDQEISSSTIEKA------QKLVSEGM--EKEK 250
           LG  L  ++SP      L     + +       + T+  A       K    G+  E ++
Sbjct: 171 LGYDLKKQTSPQLIKSLLGIPFGQIAAGGAHSFALTLSGAVFGWGRNKFGQLGLNDENDR 230

Query: 251 YMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGR 298
           Y+P + +   +   ++V I+CG DH+  L + G + + G+  YGQLG 
Sbjct: 231 YVPNLLKS--LRSQKIVYISCGEDHTAALTKEGGVFTFGAGGYGQLGH 276


>gi|403303318|ref|XP_003942281.1| PREDICTED: RCC1 and BTB domain-containing protein 1 [Saimiri
           boliviensis boliviensis]
          Length = 531

 Score = 87.0 bits (214), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 60/180 (33%), Positives = 94/180 (52%), Gaps = 12/180 (6%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPG--LPSDVTSVSAGHYHSLAVTNNGAVW 86
           V ++G      LG  T+  GV      P +V    L   V  V+ G +HS+A+  +G V+
Sbjct: 96  VYAWGHNGYSQLGNGTTNQGVA-----PIQVCTNLLIKKVVEVACGSHHSMALAADGEVF 150

Query: 87  AWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSS-AIGDDGSLWVWGK 145
           AWG NN  Q+G G+  ++ T   P++V            A G  SS A+ D+G ++ WG 
Sbjct: 151 AWGYNNCGQVGSGSTANQPT---PRKVTNCLHFKRVVGIACGQTSSMAVLDNGEVYGWGY 207

Query: 146 SKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIG 205
           +  GQLGLG +  + + P RV AL    + ++  G+ H LA T++G L+ WG +  G++G
Sbjct: 208 NGNGQLGLGNNGNQ-LTPVRVAALHSVCVNQIVCGYAHTLALTDEGLLYAWGANTYGQLG 266



 Score = 75.5 bits (184), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 71/293 (24%), Positives = 117/293 (39%), Gaps = 67/293 (22%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLP-SDVTSVSAGH-YHSLAVTNNGAVW 86
           V  FG      LG     TG       P ++ GL    + S+S G   H L  T +G V+
Sbjct: 43  VFVFGLNYSNCLG-----TGDNQSTLVPKKLEGLCGKKIKSLSYGSGPHVLLSTEDGVVY 97

Query: 87  AWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVV---------SSAIGDD 137
           AWG N   QLG G              +G+  + VC       V         S A+  D
Sbjct: 98  AWGHNGYSQLGNGTTN-----------QGVAPIQVCTNLLIKKVVEVACGSHHSMALAAD 146

Query: 138 GSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWG 197
           G ++ WG +  GQ+G G    +         L  +++V ++ G   ++A  ++G+++GWG
Sbjct: 147 GEVFAWGYNNCGQVGSGSTANQPTPRKVTNCLHFKRVVGIACGQTSSMAVLDNGEVYGWG 206

Query: 198 YSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWE 257
           Y+ +G++G      + +P+             +++                         
Sbjct: 207 YNGNGQLGLGNNGNQLTPV------------RVAA------------------------- 229

Query: 258 PFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDI 310
              +  V V  I CG+ H+L L   G+L + G+N YGQLG   ++  + P  I
Sbjct: 230 ---LHSVCVNQIVCGYAHTLALTDEGLLYAWGANTYGQLGTGNKNNLLNPAHI 279



 Score = 68.9 bits (167), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 76/293 (25%), Positives = 129/293 (44%), Gaps = 60/293 (20%)

Query: 76  SLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCA-AFASGVVSSAI 134
           +L VT++  V+ +G N    LG G  +S      PK++EGL    + + ++ SG      
Sbjct: 34  ALYVTDDDEVFVFGLNYSNCLGTGDNQSTLV---PKKLEGLCGKKIKSLSYGSGPHVLLS 90

Query: 135 GDDGSLWVWGKSKRGQLGLGKDITEAIVPSRV-EALAGEKIVKVSFGWGHALAQTEDGKL 193
            +DG ++ WG +   QLG G    + + P +V   L  +K+V+V+ G  H++A   DG++
Sbjct: 91  TEDGVVYAWGHNGYSQLGNGT-TNQGVAPIQVCTNLLIKKVVEVACGSHHSMALAADGEV 149

Query: 194 FGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMP 253
           F WGY+  G++G+   A + +P                        + V+  +  ++   
Sbjct: 150 FAWGYNNCGQVGSGSTANQPTP------------------------RKVTNCLHFKR--- 182

Query: 254 IIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDI-NF 312
                       VV IACG   S+ +  NG +   G N  GQLG       + PV +   
Sbjct: 183 ------------VVGIACGQTSSMAVLDNGEVYGWGYNGNGQLGLGNNGNQLTPVRVAAL 230

Query: 313 HPVSIS---SGLGHSLAICEVRSSNVTGGARGIV-SWGWNRSSQLGRMGPDNV 361
           H V ++    G  H+LA+ +           G++ +WG N   QLG    +N+
Sbjct: 231 HSVCVNQIVCGYAHTLALTD----------EGLLYAWGANTYGQLGTGNKNNL 273


>gi|209875367|ref|XP_002139126.1| regulator of chromosome condensation family protein
           [Cryptosporidium muris RN66]
 gi|209554732|gb|EEA04777.1| regulator of chromosome condensation family protein
           [Cryptosporidium muris RN66]
          Length = 1864

 Score = 87.0 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 76/275 (27%), Positives = 113/275 (41%), Gaps = 55/275 (20%)

Query: 26  GTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVT------SVSAGHYHSLAV 79
           G  V ++GD S G LG+ +    +G  + +       P++V        V+ G++H+L  
Sbjct: 507 GGCVYTWGDNSYGQLGIGSLHRDLGETSNKNKTFVSEPNEVKFSGPIRRVACGYWHTLCC 566

Query: 80  TNNGAVWAWGRNNEVQLGRGALESR------ATWNDPKRVEGLDQVNVCAAFASGVVSSA 133
             +G  + WGR +  QLG GA+ +        + N+   V G +  + C   A+G+  S 
Sbjct: 567 DYSGNCFTWGRGDYGQLGTGAICNMYEPVGIISLNNVIDVYGGESYSACI-IATGITISK 625

Query: 134 IGD---DGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTED 190
             D    G LW+WG    G+LGLG D+    + +      G  IVKVS G  H LA T +
Sbjct: 626 DLDTINSGDLWIWGNGDFGKLGLGDDVNGKCIAAPRYLNLGYPIVKVSLGTVHTLALTAN 685

Query: 191 GKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEK 250
           G L  WG    GR+G                                       G     
Sbjct: 686 GNLITWGAGYYGRLG--------------------------------------VGTTNNH 707

Query: 251 YMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVL 285
             PII + F +  V + DIA G DHS+ +  +G L
Sbjct: 708 NRPIIIK-FPIGDVRISDIAVGTDHSMAVSVDGDL 741



 Score = 72.8 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 50/169 (29%), Positives = 79/169 (46%), Gaps = 10/169 (5%)

Query: 31  SFGDGSQGALGLPTSLTGVGGDAYEPTRV--PGLPSDVTSVSAGHYHSLAVTNNGAVWAW 88
           S+G G  G LG     TG   D + PT++        V  ++AG  HSL  T NG ++AW
Sbjct: 188 SWGVGQFGCLG-----TGSTEDVFFPTKIEISNNSLKVQHIAAGSRHSLCCTENGNLFAW 242

Query: 89  GRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKR 148
           G N   +LG G +        P  V+ +   +VC        S  I   G ++ WG    
Sbjct: 243 GSNANGRLGIGGVNGIKL--KPTIVQSMLPYHVCFVVTGEAHSGCIDRMGIVFTWGNGSN 300

Query: 149 GQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWG 197
           GQLG G  + +  +P +V  ++    V+++FG   ++  T+ G ++ WG
Sbjct: 301 GQLGHGLQL-DCPIPRKVHGISSIPFVQLAFGAFISMGLTQSGDVYIWG 348



 Score = 61.6 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 55/210 (26%), Positives = 97/210 (46%), Gaps = 21/210 (10%)

Query: 11  HVNVLTSRIFMRSASGTAVVSFGDGSQGALGLPTSLTGVGGD-----------AYEPTRV 59
           H  VL   I   + SG  V + G G++G LG   S T  G +           +  P  V
Sbjct: 103 HTAVLIKSI---TESGGKVYTMGLGNRGRLGYTRSDTEFGLEEEYLDKNESWYSISPCIV 159

Query: 60  PGLPSD--VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLD 117
              PS+  ++ +  G  H+LA+++NG +++WG      LG G+ E       P ++E  +
Sbjct: 160 K-FPSNTKISRICCGANHTLALSDNGHLYSWGVGQFGCLGTGSTEDVFF---PTKIEISN 215

Query: 118 QVNVCAAFASGVVSS-AIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVK 176
                   A+G   S    ++G+L+ WG +  G+LG+G      + P+ V+++    +  
Sbjct: 216 NSLKVQHIAAGSRHSLCCTENGNLFAWGSNANGRLGIGGVNGIKLKPTIVQSMLPYHVCF 275

Query: 177 VSFGWGHALAQTEDGKLFGWGYSADGRIGN 206
           V  G  H+      G +F WG  ++G++G+
Sbjct: 276 VVTGEAHSGCIDRMGIVFTWGNGSNGQLGH 305



 Score = 58.9 bits (141), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 62/246 (25%), Positives = 97/246 (39%), Gaps = 54/246 (21%)

Query: 140 LWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTED-----GKLF 194
           L+ WG++    LG G D  +  +P+RV   +   + +VS G+ H     +      GK++
Sbjct: 60  LYAWGENTNNVLGFGIDTDKVDLPTRVPFFSIYDVFQVSCGYLHTAVLIKSITESGGKVY 119

Query: 195 GWGYSADGRIG----NLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEK 250
             G    GR+G    +    LE   LD N     ES   IS   ++              
Sbjct: 120 TMGLGNRGRLGYTRSDTEFGLEEEYLDKN-----ESWYSISPCIVK-------------- 160

Query: 251 YMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDI 310
                         ++  I CG +H+L L  NG L S G   +G LG    +   FP  I
Sbjct: 161 ---------FPSNTKISRICCGANHTLALSDNGHLYSWGVGQFGCLGTGSTEDVFFPTKI 211

Query: 311 NFHPVS-----ISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPDNV---P 362
                S     I++G  HSL  C   + N       + +WG N + +LG  G + +   P
Sbjct: 212 EISNNSLKVQHIAAGSRHSL--CCTENGN-------LFAWGSNANGRLGIGGVNGIKLKP 262

Query: 363 LVVEGL 368
            +V+ +
Sbjct: 263 TIVQSM 268



 Score = 56.2 bits (134), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 66/289 (22%), Positives = 113/289 (39%), Gaps = 65/289 (22%)

Query: 63  PSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVC 122
           P+ V  ++ G  H++ +T  G V+ WG N+  QLG G+L         K    + + N  
Sbjct: 488 PNTVRQIACGEAHNILLTYGGCVYTWGDNSYGQLGIGSLHRDLGETSNKNKTFVSEPNE- 546

Query: 123 AAFASGVVSSAIG--------DDGSLWVWGKSKRGQLGLGK--DITEAI----VPSRVEA 168
             F+  +   A G          G+ + WG+   GQLG G   ++ E +    + + ++ 
Sbjct: 547 VKFSGPIRRVACGYWHTLCCDYSGNCFTWGRGDYGQLGTGAICNMYEPVGIISLNNVIDV 606

Query: 169 LAGEKIVKVSFGWGHALAQTED----GKLFGWGYSADGRIGNLGKALESSPLDSNIDRSS 224
             GE         G  +++  D    G L+ WG   +G  G LG                
Sbjct: 607 YGGESYSACIIATGITISKDLDTINSGDLWIWG---NGDFGKLGLG-------------- 649

Query: 225 ESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGV 284
               +++   I   +                   +L  G  +V ++ G  H+L L  NG 
Sbjct: 650 ---DDVNGKCIAAPR-------------------YLNLGYPIVKVSLGTVHTLALTANGN 687

Query: 285 LLSCGSNVYGQLGREKQDMGMFPVDINFHPV------SISSGLGHSLAI 327
           L++ G+  YG+LG    +    P+ I F P+       I+ G  HS+A+
Sbjct: 688 LITWGAGYYGRLGVGTTNNHNRPIIIKF-PIGDVRISDIAVGTDHSMAV 735



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 50/171 (29%), Positives = 78/171 (45%), Gaps = 16/171 (9%)

Query: 32  FGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRN 91
           +G+G  G LGL      V G      R   L   +  VS G  H+LA+T NG +  WG  
Sbjct: 638 WGNGDFGKLGLGDD---VNGKCIAAPRYLNLGYPIVKVSLGTVHTLALTANGNLITWGAG 694

Query: 92  NEVQLGRGALESRATWNDPKRVE-GLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQ 150
              +LG G   +    N P  ++  +  V +         S A+  DG LW+WGK+    
Sbjct: 695 YYGRLGVGTTNNH---NRPIIIKFPIGDVRISDIAVGTDHSMAVSVDGDLWIWGKA---S 748

Query: 151 LGLGK-DITEAIVPSRVEALAGEKIVKVSFGWGHA---LAQTEDGKLFGWG 197
           + L + D+ +  + +++E+  G  + KV   + HA    A T  G+L+ WG
Sbjct: 749 VVLNETDVLQPHIFAKLESATG--VPKVYSVYAHADISYAITNTGELWTWG 797



 Score = 48.5 bits (114), Expect = 0.005,   Method: Composition-based stats.
 Identities = 50/201 (24%), Positives = 86/201 (42%), Gaps = 17/201 (8%)

Query: 12  VNVLTSRIFMRSASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPT--RVPGLPSDVTSV 69
           V++ T      +A+G  ++++G G  G LG+     G   +   P   + P     ++ +
Sbjct: 672 VSLGTVHTLALTANGN-LITWGAGYYGRLGV-----GTTNNHNRPIIIKFPIGDVRISDI 725

Query: 70  SAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQV-NVCAAFASG 128
           + G  HS+AV+ +G +W WG+ + V      L+         ++E    V  V + +A  
Sbjct: 726 AVGTDHSMAVSVDGDLWIWGKASVVLNETDVLQPHIF----AKLESATGVPKVYSVYAHA 781

Query: 129 VVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPS---RVE-ALAGEKIVKVSFGWGHA 184
            +S AI + G LW WG          K   +    S   R E  L    +  VS G  H+
Sbjct: 782 DISYAITNTGELWTWGPESLDTQKKRKMKKKDKDYSHTGRTELVLLPGSVAGVSGGSCHS 841

Query: 185 LAQTEDGKLFGWGYSADGRIG 205
           +     G++  WG +  GR+G
Sbjct: 842 MCLLVTGEVLSWGSTESGRLG 862



 Score = 47.4 bits (111), Expect = 0.011,   Method: Composition-based stats.
 Identities = 32/118 (27%), Positives = 51/118 (43%), Gaps = 8/118 (6%)

Query: 31  SFGDGSQGALGLPTSLTGVGGDAYEPTRVPG-LPSDVTSVSAGHYHSLAVTNNGAVWAWG 89
           ++G  + G LG+     GV G   +PT V   LP  V  V  G  HS  +   G V+ WG
Sbjct: 241 AWGSNANGRLGI----GGVNGIKLKPTIVQSMLPYHVCFVVTGEAHSGCIDRMGIVFTWG 296

Query: 90  RNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSK 147
             +  QLG G    +     P++V G+  +          +S  +   G +++WG  +
Sbjct: 297 NGSNGQLGHGL---QLDCPIPRKVHGISSIPFVQLAFGAFISMGLTQSGDVYIWGSKQ 351


>gi|24655113|ref|NP_728591.1| CG9153, isoform A [Drosophila melanogaster]
 gi|24655115|ref|NP_612098.2| CG9153, isoform B [Drosophila melanogaster]
 gi|23092754|gb|AAF47474.2| CG9153, isoform A [Drosophila melanogaster]
 gi|23092755|gb|AAF47475.2| CG9153, isoform B [Drosophila melanogaster]
          Length = 1058

 Score = 87.0 bits (214), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 78/292 (26%), Positives = 123/292 (42%), Gaps = 54/292 (18%)

Query: 24  ASGTAVVSFGDGSQGALGLPTSLTGVGGDAYE----PTRVPGLP-SDVTSVSAGHYHSLA 78
           ASG  +  +G  S G LGL       GG   E    P+++P  P + V  V+ GH H+L 
Sbjct: 2   ASGKELYCWGSTSHGQLGL-------GGIEDEQILTPSQIPWTPDTAVQQVACGHRHTLF 54

Query: 79  VTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDG 138
           +T  G V+A G N+  QLG      R     P  +  L    +         S A+ D G
Sbjct: 55  LTATGKVYACGSNDYSQLGHDLPTKR-----PLLIPELQDYVIIQICCGSRHSLALSDWG 109

Query: 139 SLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGY 198
            +  WG +  GQLG   D     +P  V  L  + +V+++ G  H+LA T  G+L+ WG 
Sbjct: 110 QVLSWGDNDCGQLGHATDKEIVQLPKVVRQLVTKTVVQIACGNNHSLALTSCGELYSWGS 169

Query: 199 SADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEP 258
           +  G++G       +SP D      +  +  +  +T+                       
Sbjct: 170 NIYGQLG------VNSPND-----LTHCNYPLRLTTL----------------------- 195

Query: 259 FLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDI 310
               G+ +  IACG +HS ++ ++G +   G N  GQLG   +    +P  +
Sbjct: 196 ---LGIPLAAIACGGNHSFLISKSGAVFGWGRNNCGQLGLNDETNRSYPTQL 244



 Score = 64.3 bits (155), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 55/179 (30%), Positives = 88/179 (49%), Gaps = 6/179 (3%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSD-VTSVSAGHYHSLAVTNNGAVWA 87
           V+S+GD   G LG  T    V      P  V  L +  V  ++ G+ HSLA+T+ G +++
Sbjct: 111 VLSWGDNDCGQLGHATDKEIVQ----LPKVVRQLVTKTVVQIACGNNHSLALTSCGELYS 166

Query: 88  WGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSK 147
           WG N   QLG  +       N P R+  L  + + A    G  S  I   G+++ WG++ 
Sbjct: 167 WGSNIYGQLGVNSPNDLTHCNYPLRLTTLLGIPLAAIACGGNHSFLISKSGAVFGWGRNN 226

Query: 148 RGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGN 206
            GQLGL  D T    P++++ L    +  V+ G   ++  T +G +F  G  A G++G+
Sbjct: 227 CGQLGLN-DETNRSYPTQLKTLRTLGVRFVACGDEFSVFLTNEGGVFTCGAGAYGQLGH 284



 Score = 62.8 bits (151), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 70/235 (29%), Positives = 100/235 (42%), Gaps = 30/235 (12%)

Query: 140 LWVWGKSKRGQLGLGKDITEAIV-PSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWG- 197
           L+ WG +  GQLGLG    E I+ PS++       + +V+ G  H L  T  GK++  G 
Sbjct: 7   LYCWGSTSHGQLGLGGIEDEQILTPSQIPWTPDTAVQQVACGHRHTLFLTATGKVYACGS 66

Query: 198 --YSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKL---------VSEGM 246
             YS  G      + L    L   +          S +  +  Q L         +    
Sbjct: 67  NDYSQLGHDLPTKRPLLIPELQDYVIIQICCGSRHSLALSDWGQVLSWGDNDCGQLGHAT 126

Query: 247 EKEKYMPIIWEPFLVEGV---EVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDM 303
           +KE    I+  P +V  +    VV IACG +HSL L   G L S GSN+YGQLG      
Sbjct: 127 DKE----IVQLPKVVRQLVTKTVVQIACGNNHSLALTSCGELYSWGSNIYGQLGVNS--- 179

Query: 304 GMFPVDINF--HPVSISSGLGHSLA--ICEVRSSNVTGGARGIVSWGWNRSSQLG 354
              P D+    +P+ +++ LG  LA   C    S +   +  +  WG N   QLG
Sbjct: 180 ---PNDLTHCNYPLRLTTLLGIPLAAIACGGNHSFLISKSGAVFGWGRNNCGQLG 231


>gi|327277952|ref|XP_003223727.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC4-like isoform
           1 [Anolis carolinensis]
          Length = 1052

 Score = 87.0 bits (214), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 81/288 (28%), Positives = 138/288 (47%), Gaps = 30/288 (10%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDA-YEPTRVPG-LPSDVTSVSAGHYHSLAVTNNGAVW 86
           ++ +G+ S G LGL     G+  +   EP R    L   V  V  G  H++ V ++G V+
Sbjct: 1   MLCWGNASFGQLGL----GGIDEEVVLEPRRCNFFLNKTVRDVGCGLRHTVFVLDDGTVY 56

Query: 87  AWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKS 146
             G N+  QLG      R     P++V  LD  N+ A       +  + D G ++ WG +
Sbjct: 57  TCGCNDLGQLGHEKSRKR-----PEQVGALDAQNIVAVSCGEAHTLTLNDKGQVYAWGFA 111

Query: 147 KRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGN 206
             GQLGL        VP  +++L+  +IV+V+ G+ H+LA ++  ++F WG +  G++G 
Sbjct: 112 ADGQLGLPGTEEYTRVPRNIKSLSDVQIVQVACGYYHSLALSKGSEVFSWGQNKHGQLG- 170

Query: 207 LGKAL--ESSP------LDSNIDRSSESDQEISSSTIEKA------QKLVSEGM--EKEK 250
           LG  L  ++SP      L     + +       + T+  A       K    G+  E ++
Sbjct: 171 LGYDLKKQTSPQLIKSLLGIPFGQIAAGGAHSFALTLSGAVFGWGRNKFGQLGLNDENDR 230

Query: 251 YMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGR 298
           Y+P + +   +   ++V I+CG DH+  L + G + + G+  YGQLG 
Sbjct: 231 YVPNLLKS--LRSQKIVYISCGEDHTAALTKEGGVFTFGAGGYGQLGH 276


>gi|410900470|ref|XP_003963719.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC4-like
           [Takifugu rubripes]
          Length = 1042

 Score = 87.0 bits (214), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 78/309 (25%), Positives = 132/309 (42%), Gaps = 63/309 (20%)

Query: 55  EPTRVPGLPSDV-TSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRV 113
           +P  V  L + +  +VS G  H+LA+ + G +++WG  ++ QLG    E       P+ +
Sbjct: 74  KPEHVVALDAQIIVAVSGGESHTLALNDKGQIFSWGLGSDGQLGLNNFEECV--RVPRNI 131

Query: 114 EGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEK 173
           + L  V +         S A+   G ++ WG+++ GQLGLG   +    P  +++L G  
Sbjct: 132 KCLSDVQIAQVACGYRHSHALSKGGQVFSWGQNQFGQLGLGMHGSSISTPQIIQSLQGIP 191

Query: 174 IVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSS 233
             ++S G  H+ A T  G +FGWG +  G++G          L+   DR           
Sbjct: 192 FAQLSAGGAHSFAITLSGAVFGWGRNKFGQLG----------LNDTNDR----------- 230

Query: 234 TIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVE---VVDIACGFDHSLVLGRNGVLLSCGS 290
                                 W P L++ +    V+ ++CG DH+  L + G + + G+
Sbjct: 231 ----------------------WFPALLKSLRSQRVIYVSCGEDHTAALTKEGGVFTFGA 268

Query: 291 NVYGQLGREKQDMGMFPVDINFHPV-----SISSGLGHSLAICEVRSSNVTGGARGIVSW 345
             YGQLG    +  + P  + F  +      IS G  H+LA         T  +  + S+
Sbjct: 269 GGYGQLGHNSTNHEINPRKV-FELMGNIVTQISCGRQHTLAF--------TPSSGKMYSF 319

Query: 346 GWNRSSQLG 354
           G   + QLG
Sbjct: 320 GLGGNGQLG 328



 Score = 74.3 bits (181), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 75/280 (26%), Positives = 113/280 (40%), Gaps = 67/280 (23%)

Query: 85  VWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWG 144
           +  WG  +  QLG G ++      +P++ E      VC        +  + DDG+++  G
Sbjct: 1   MLCWGNASYGQLGLGGIDEEIVI-EPRKCEFFHGKKVCDVGCGLKHTVFLLDDGTVYTCG 59

Query: 145 KSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRI 204
            +  GQLG  K   +   P  V AL  + IV VS G  H LA  + G++F WG  +DG++
Sbjct: 60  CNDLGQLGHEKPRKK---PEHVVALDAQIIVAVSGGESHTLALNDKGQIFSWGLGSDGQL 116

Query: 205 GNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGV 264
           G L    E   +  NI   S+                                      V
Sbjct: 117 G-LNNFEECVRVPRNIKCLSD--------------------------------------V 137

Query: 265 EVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFHPV--------- 315
           ++  +ACG+ HS  L + G + S G N +GQLG     +GM    I+   +         
Sbjct: 138 QIAQVACGYRHSHALSKGGQVFSWGQNQFGQLG-----LGMHGSSISTPQIIQSLQGIPF 192

Query: 316 -SISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLG 354
             +S+G  HS AI       ++G   G   WG N+  QLG
Sbjct: 193 AQLSAGGAHSFAI------TLSGAVFG---WGRNKFGQLG 223



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 59/197 (29%), Positives = 89/197 (45%), Gaps = 16/197 (8%)

Query: 24  ASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRV----PGLPSDVTSVSAGHYHSLAV 79
           + G  V S+G    G LGL     G+ G +    ++     G+P     +SAG  HS A+
Sbjct: 153 SKGGQVFSWGQNQFGQLGL-----GMHGSSISTPQIIQSLQGIP--FAQLSAGGAHSFAI 205

Query: 80  TNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGS 139
           T +GAV+ WGRN   QLG      R  W  P  ++ L    V         ++A+  +G 
Sbjct: 206 TLSGAVFGWGRNKFGQLGLNDTNDR--WF-PALLKSLRSQRVIYVSCGEDHTAALTKEGG 262

Query: 140 LWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQT-EDGKLFGWGY 198
           ++ +G    GQLG        I P +V  L G  + ++S G  H LA T   GK++ +G 
Sbjct: 263 VFTFGAGGYGQLG-HNSTNHEINPRKVFELMGNIVTQISCGRQHTLAFTPSSGKMYSFGL 321

Query: 199 SADGRIGNLGKALESSP 215
             +G++G        SP
Sbjct: 322 GGNGQLGTRSTCNRKSP 338


>gi|324509125|gb|ADY43843.1| RCC1 and BTB domain-containing protein 1 [Ascaris suum]
          Length = 533

 Score = 87.0 bits (214), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 63/196 (32%), Positives = 109/196 (55%), Gaps = 21/196 (10%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPS--DVTSVSAGHYHSLAVTNNGAVW 86
           V S+G  + G LGL ++  G+      P+ V    S  +V  ++ G +HS+AVT+ G ++
Sbjct: 96  VFSWGHNAFGQLGLGSTTVGIA-----PSLVGDTLSGHNVVQIACGSHHSVAVTDRGEIF 150

Query: 87  AWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVV-----SSAIGDDGSLW 141
           AWGRN+  Q+G G   S    + P++V G    ++   F   VV     + A+ D G ++
Sbjct: 151 AWGRNSCGQVGIG---SNVNQDLPRQVTG----HLLNRFVRSVVCGQNSTMALTDGGEVF 203

Query: 142 VWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSAD 201
            WG +  GQLG G +++    P+ V  L    I +++ G+ H+LA T++G+LF WG +  
Sbjct: 204 AWGFNGNGQLGAG-NLSNQHSPALVIGLHNVVIEQIACGFAHSLALTDEGQLFAWGSNTC 262

Query: 202 GRI-GNLGKALESSPL 216
           G++  NL ++ ++SP+
Sbjct: 263 GQLCANLPRSNQTSPV 278



 Score = 81.6 bits (200), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 94/337 (27%), Positives = 146/337 (43%), Gaps = 70/337 (20%)

Query: 13  NVLTSRIFMRSASGTAVVSFGDGSQGALGLPTSLTGVGGD----AYEPTRVPGLP-SDVT 67
           N+ T+ +F  S S   +V+  +G   A+G   S + +G +      EP+R+  L    + 
Sbjct: 20  NLQTAIVFGSSGSEAILVT-KEGELYAIG-TNSCSCLGTNRSQGTLEPSRIDTLSGRAIV 77

Query: 68  SVSAGH-YHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRV-EGLDQVNVCAAF 125
           S++ G   H LA++ NG V++WG N   QLG G   S      P  V + L   NV    
Sbjct: 78  SLAYGSGPHVLALSQNGEVFSWGHNAFGQLGLG---STTVGIAPSLVGDTLSGHNVVQIA 134

Query: 126 ASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVK-VSFGWGHA 184
                S A+ D G ++ WG++  GQ+G+G ++ + + P +V      + V+ V  G    
Sbjct: 135 CGSHHSVAVTDRGEIFAWGRNSCGQVGIGSNVNQDL-PRQVTGHLLNRFVRSVVCGQNST 193

Query: 185 LAQTEDGKLFGWGYSADGRI--GNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLV 242
           +A T+ G++F WG++ +G++  GNL                  S+Q              
Sbjct: 194 MALTDGGEVFAWGFNGNGQLGAGNL------------------SNQH------------- 222

Query: 243 SEGMEKEKYMPIIWEPFLVEGVEVV---DIACGFDHSLVLGRNGVLLSCGSNVYGQLGRE 299
                          P LV G+  V    IACGF HSL L   G L + GSN  GQL   
Sbjct: 223 --------------SPALVIGLHNVVIEQIACGFAHSLALTDEGQLFAWGSNTCGQL--- 265

Query: 300 KQDMGMFPVDINFHPVSISSGLGHSLAICEVRSSNVT 336
                  P      PV ++S LG  + +  V + N+T
Sbjct: 266 ---CANLPRSNQTSPVLVASALGRIIEVAAVHACNIT 299



 Score = 61.2 bits (147), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 65/255 (25%), Positives = 113/255 (44%), Gaps = 63/255 (24%)

Query: 126 ASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWG-HA 184
           +SG  +  +  +G L+  G +    LG  +     + PSR++ L+G  IV +++G G H 
Sbjct: 29  SSGSEAILVTKEGELYAIGTNSCSCLGTNRS-QGTLEPSRIDTLSGRAIVSLAYGSGPHV 87

Query: 185 LAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSE 244
           LA +++G++F WG++A G++G                        + S+T+  A  LV +
Sbjct: 88  LALSQNGEVFSWGHNAFGQLG------------------------LGSTTVGIAPSLVGD 123

Query: 245 GMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLG---REKQ 301
            +                G  VV IACG  HS+ +   G + + G N  GQ+G      Q
Sbjct: 124 TLS---------------GHNVVQIACGSHHSVAVTDRGEIFAWGRNSCGQVGIGSNVNQ 168

Query: 302 DMGMFPVDINFHPV-----SISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQL--G 354
           D+   P  +  H +     S+  G   ++A+ +       GG   + +WG+N + QL  G
Sbjct: 169 DL---PRQVTGHLLNRFVRSVVCGQNSTMALTD-------GGE--VFAWGFNGNGQLGAG 216

Query: 355 RMGPDNVPLVVEGLE 369
            +   + P +V GL 
Sbjct: 217 NLSNQHSPALVIGLH 231


>gi|196012194|ref|XP_002115960.1| hypothetical protein TRIADDRAFT_59918 [Trichoplax adhaerens]
 gi|190581736|gb|EDV21812.1| hypothetical protein TRIADDRAFT_59918 [Trichoplax adhaerens]
          Length = 897

 Score = 87.0 bits (214), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 45/154 (29%), Positives = 87/154 (56%), Gaps = 7/154 (4%)

Query: 52  DAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPK 111
           DA+E  R+  + S+      G  H+LA+ +   ++AWG N++ QLG      +  +  P+
Sbjct: 79  DAFESMRITNVSSN------GANHNLAINDKNCIYAWGDNSDGQLGVTDQNLKQFYRTPR 132

Query: 112 RVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAG 171
           +++ L +  V         S A+ +DG+++ WG ++ GQLG+  +++ ++ P ++  L+G
Sbjct: 133 QIKSLSKFAVVQVACGQSHSLAVINDGTVFSWGSNRYGQLGIDSNVS-SVEPKQILKLSG 191

Query: 172 EKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIG 205
             IV+++ G  H+LA T  G L  WG ++ G++G
Sbjct: 192 FYIVQIAAGGAHSLAITNSGALLTWGKNSFGQLG 225



 Score = 80.1 bits (196), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 76/292 (26%), Positives = 125/292 (42%), Gaps = 57/292 (19%)

Query: 69  VSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASG 128
           +S G  H++ +  +G +++ G N+  Q GR     R       R++  + + +    ++G
Sbjct: 39  ISCGLNHTILLLQDGQIYSCGSNDYGQTGRQRNNKRFA-----RIDAFESMRITNVSSNG 93

Query: 129 VVSS-AIGDDGSLWVWGKSKRGQLGLGKDITEAI--VPSRVEALAGEKIVKVSFGWGHAL 185
              + AI D   ++ WG +  GQLG+     +     P ++++L+   +V+V+ G  H+L
Sbjct: 94  ANHNLAINDKNCIYAWGDNSDGQLGVTDQNLKQFYRTPRQIKSLSKFAVVQVACGQSHSL 153

Query: 186 AQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEG 245
           A   DG +F WG     R G LG       +DSN+            S++E  Q L    
Sbjct: 154 AVINDGTVFSWG---SNRYGQLG-------IDSNV------------SSVEPKQILK--- 188

Query: 246 MEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGM 305
                          + G  +V IA G  HSL +  +G LL+ G N +GQLG    D G+
Sbjct: 189 ---------------LSGFYIVQIAAGGAHSLAITNSGALLTWGKNSFGQLGLGTND-GV 232

Query: 306 FPVDINFHPVSISSGLGHSLAI--CEVRSSNVTGGARGIVSWGWNRSSQLGR 355
                   P  +SS     +A   C    + V     G+ ++G   S QLG 
Sbjct: 233 LS------PTCVSSLRSQHIAYAACGEDHTAVLTKEGGVFTFGAGSSGQLGH 278



 Score = 70.5 bits (171), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 77/300 (25%), Positives = 122/300 (40%), Gaps = 69/300 (23%)

Query: 85  VWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIG------DDG 138
           ++AWG+  E QLG G +       D   +     V++       ++S  +        DG
Sbjct: 1   MFAWGKAIEGQLGLGGI-------DENCILKATHVDLTTNHTIKLISCGLNHTILLLQDG 53

Query: 139 SLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSF-GWGHALAQTEDGKLFGWG 197
            ++  G +  GQ G  ++       +R++A    +I  VS  G  H LA  +   ++ WG
Sbjct: 54  QIYSCGSNDYGQTGRQRNNKRF---ARIDAFESMRITNVSSNGANHNLAINDKNCIYAWG 110

Query: 198 YSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWE 257
            ++DG++G           D N+ +   + ++I S                         
Sbjct: 111 DNSDGQLG---------VTDQNLKQFYRTPRQIKS------------------------- 136

Query: 258 PFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDI----NFH 313
              +    VV +ACG  HSL +  +G + S GSN YGQLG +     + P  I     F+
Sbjct: 137 ---LSKFAVVQVACGQSHSLAVINDGTVFSWGSNRYGQLGIDSNVSSVEPKQILKLSGFY 193

Query: 314 PVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPDNV--PLVVEGLEGE 371
            V I++G  HSLAI          GA  +++WG N   QLG    D V  P  V  L  +
Sbjct: 194 IVQIAAGGAHSLAI-------TNSGA--LLTWGKNSFGQLGLGTNDGVLSPTCVSSLRSQ 244



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 48/167 (28%), Positives = 80/167 (47%), Gaps = 18/167 (10%)

Query: 28  AVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLP-SDVTSVSAGHYHSLAVTNNGAVW 86
            V S+G    G LG+ ++++ V     EP ++  L    +  ++AG  HSLA+TN+GA+ 
Sbjct: 160 TVFSWGSNRYGQLGIDSNVSSV-----EPKQILKLSGFYIVQIAAGGAHSLAITNSGALL 214

Query: 87  AWGRNNEVQLGRGALESRATWND----PKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWV 142
            WG+N+  QLG G        ND    P  V  L   ++  A      ++ +  +G ++ 
Sbjct: 215 TWGKNSFGQLGLGT-------NDGVLSPTCVSSLRSQHIAYAACGEDHTAVLTKEGGVFT 267

Query: 143 WGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTE 189
           +G    GQLG    ++    P  V  L G  + +++ G  +AL Q E
Sbjct: 268 FGAGSSGQLG-HNSLSHHCSPQMVVDLMGIVVTQITCGRFYALQQDE 313


>gi|307193259|gb|EFN76150.1| Probable E3 ubiquitin-protein ligase HERC4 [Harpegnathos saltator]
          Length = 1054

 Score = 87.0 bits (214), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 83/312 (26%), Positives = 125/312 (40%), Gaps = 58/312 (18%)

Query: 63  PSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVC 122
           P      + G  H+L V   G +++WG N E QLG   +   AT  +P+ V+ L    + 
Sbjct: 83  PLAFRKAACGSSHTLVVNEWGQLFSWGSNVEGQLGLDRVS--ATIREPRMVKTLG-TKII 139

Query: 123 AAFASGVVSS-AIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGW 181
              A G+  S A+ ++G L+ WG +  GQLGLG D    + P  V +LA   I  V+ G 
Sbjct: 140 VQIACGLKHSIALTNNGELYAWGSNSDGQLGLGSDTKMELKPKLVHSLAAVPIAFVACGG 199

Query: 182 GHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKL 241
            H +  ++ G +F WG +  G++G       + P      R+S                 
Sbjct: 200 YHTIVISKSGAVFAWGRNTFGQLGLSDIQNRNVPCQLRTLRNS----------------- 242

Query: 242 VSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQ 301
                                   V   ACG + S+ L  +G + +CG+ +YGQLG   +
Sbjct: 243 -----------------------RVCYAACGEEFSVFLTMDGGVFTCGAGMYGQLGHGNK 279

Query: 302 DMGMFPVDI----NFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMG 357
              + P  I          IS G  H+LA+   R          + +WG   + QLG   
Sbjct: 280 TSEILPRQIMELMGSTVTQISCGRRHTLALVPSRGR--------VYAWGLGGAGQLGNRI 331

Query: 358 PDN--VPLVVEG 367
             N   P VV G
Sbjct: 332 AQNSTTPQVVFG 343



 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 60/234 (25%), Positives = 109/234 (46%), Gaps = 44/234 (18%)

Query: 64  SDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCA 123
           +++  ++ G  +++AVT  G V++ G N+  QLG+     R      + + G+D +    
Sbjct: 34  NEIEQIACGDNYTIAVTKEGQVYSCGNNDHGQLGQEKGRKRL-----QLISGIDPLAFRK 88

Query: 124 AFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGH 183
           A      +  + + G L+ WG +  GQLGL +       P  V+ L  + IV+++ G  H
Sbjct: 89  AACGSSHTLVVNEWGQLFSWGSNVEGQLGLDRVSATIREPRMVKTLGTKIIVQIACGLKH 148

Query: 184 ALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVS 243
           ++A T +G+L+ WG ++DG++G LG                      S + +E   KLV 
Sbjct: 149 SIALTNNGELYAWGSNSDGQLG-LG----------------------SDTKMELKPKLVH 185

Query: 244 EGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLG 297
                            +  V +  +ACG  H++V+ ++G + + G N +GQLG
Sbjct: 186 S----------------LAAVPIAFVACGGYHTIVISKSGAVFAWGRNTFGQLG 223



 Score = 82.0 bits (201), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 58/183 (31%), Positives = 91/183 (49%), Gaps = 16/183 (8%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDA---YEPTRVPGLPS-DVTSVSAGHYHSLAVTNNGA 84
           + ++G  S G LGL       G D     +P  V  L +  +  V+ G YH++ ++ +GA
Sbjct: 158 LYAWGSNSDGQLGL-------GSDTKMELKPKLVHSLAAVPIAFVACGGYHTIVISKSGA 210

Query: 85  VWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWG 144
           V+AWGRN   QLG   +++R   N P ++  L    VC A      S  +  DG ++  G
Sbjct: 211 VFAWGRNTFGQLGLSDIQNR---NVPCQLRTLRNSRVCYAACGEEFSVFLTMDGGVFTCG 267

Query: 145 KSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTED-GKLFGWGYSADGR 203
               GQLG G   +E I+P ++  L G  + ++S G  H LA     G+++ WG    G+
Sbjct: 268 AGMYGQLGHGNKTSE-ILPRQIMELMGSTVTQISCGRRHTLALVPSRGRVYAWGLGGAGQ 326

Query: 204 IGN 206
           +GN
Sbjct: 327 LGN 329



 Score = 61.6 bits (148), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 77/294 (26%), Positives = 117/294 (39%), Gaps = 65/294 (22%)

Query: 85  VWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASG-VVSSAIGDDGSLWVW 143
           ++ WG     +LG G +E    +  P+ V   ++ N     A G   + A+  +G ++  
Sbjct: 1   MFCWGSTIHGELGLGGIEDENIFT-PREV-NFEKANEIEQIACGDNYTIAVTKEGQVYSC 58

Query: 144 GKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGR 203
           G +  GQLG  K      + S ++ LA  K    + G  H L   E G+LF WG + +G+
Sbjct: 59  GNNDHGQLGQEKGRKRLQLISGIDPLAFRK---AACGSSHTLVVNEWGQLFSWGSNVEGQ 115

Query: 204 IGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEG 263
           +G              +DR S        +TI + + + + G +                
Sbjct: 116 LG--------------LDRVS--------ATIREPRMVKTLGTKI--------------- 138

Query: 264 VEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFHPVSISSGLGH 323
             +V IACG  HS+ L  NG L + GSN  GQLG    D  M           +   L H
Sbjct: 139 --IVQIACGLKHSIALTNNGELYAWGSNSDGQLGL-GSDTKM----------ELKPKLVH 185

Query: 324 SLA-------ICEVRSSNVTGGARGIVSWGWNRSSQLG--RMGPDNVPLVVEGL 368
           SLA        C    + V   +  + +WG N   QLG   +   NVP  +  L
Sbjct: 186 SLAAVPIAFVACGGYHTIVISKSGAVFAWGRNTFGQLGLSDIQNRNVPCQLRTL 239


>gi|260826736|ref|XP_002608321.1| hypothetical protein BRAFLDRAFT_125491 [Branchiostoma floridae]
 gi|229293672|gb|EEN64331.1| hypothetical protein BRAFLDRAFT_125491 [Branchiostoma floridae]
          Length = 364

 Score = 87.0 bits (214), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 62/177 (35%), Positives = 91/177 (51%), Gaps = 29/177 (16%)

Query: 56  PTRVP-GLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVE 114
           PT +P  L   V +V  G  HSLA+T +G V++WG  +  QLG G  E+    N P+ +E
Sbjct: 155 PTPLPVYLGEKVKAVCCGKEHSLALTLSGRVFSWGNGSRGQLGHGTTEAS---NTPQVIE 211

Query: 115 GLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGL--------------------- 153
            L+ V +    A G  S ++   G L+VWG ++ GQLGL                     
Sbjct: 212 ALEGVTMVTIAAGGWHSVSVSAFGDLYVWGWNEAGQLGLPTSKHKTGPSDHKPSISEMGH 271

Query: 154 -GKDITEAIV---PSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGN 206
            G ++ E +V   P+ V+  AG+++ KVS G  H  A T DG+L  WG+ A G++GN
Sbjct: 272 QGDNVAEVLVQATPTIVDMPAGQEVSKVSCGSRHTAALTRDGQLLTWGWGAYGQLGN 328



 Score = 68.6 bits (166), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 56/183 (30%), Positives = 91/183 (49%), Gaps = 17/183 (9%)

Query: 131 SSAIGDDGSLWVWGKSKRGQLGLGKDITEAI-VPSRVEALAGEKIVKVSFGWGHALAQTE 189
           S A+   G ++ WG   RGQLG G   TEA   P  +EAL G  +V ++ G  H+++ + 
Sbjct: 176 SLALTLSGRVFSWGNGSRGQLGHG--TTEASNTPQVIEALEGVTMVTIAAGGWHSVSVSA 233

Query: 190 DGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKE 249
            G L+ WG++  G++G          L ++  ++  SD + S S +      V+E + + 
Sbjct: 234 FGDLYVWGWNEAGQLG----------LPTSKHKTGPSDHKPSISEMGHQGDNVAEVLVQA 283

Query: 250 KYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVD 309
              P I +  +  G EV  ++CG  H+  L R+G LL+ G   YGQLG  + +    P  
Sbjct: 284 --TPTIVD--MPAGQEVSKVSCGSRHTAALTRDGQLLTWGWGAYGQLGNGQTERCEVPRA 339

Query: 310 INF 312
           + F
Sbjct: 340 VEF 342



 Score = 39.3 bits (90), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 35/115 (30%), Positives = 52/115 (45%), Gaps = 20/115 (17%)

Query: 263 GVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDIN----FHPVSIS 318
           G +V  + CG +HSL L  +G + S G+   GQLG    +    P  I        V+I+
Sbjct: 163 GEKVKAVCCGKEHSLALTLSGRVFSWGNGSRGQLGHGTTEASNTPQVIEALEGVTMVTIA 222

Query: 319 SGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLG------RMGP-DNVPLVVE 366
           +G  HS+++       V         WGWN + QLG      + GP D+ P + E
Sbjct: 223 AGGWHSVSVSAFGDLYV---------WGWNEAGQLGLPTSKHKTGPSDHKPSISE 268


>gi|330837791|ref|YP_004412432.1| chromosome condensation regulator RCC1 [Sphaerochaeta coccoides DSM
           17374]
 gi|329749694|gb|AEC03050.1| regulator of chromosome condensation RCC1 [Sphaerochaeta coccoides
           DSM 17374]
          Length = 726

 Score = 87.0 bits (214), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 71/275 (25%), Positives = 125/275 (45%), Gaps = 30/275 (10%)

Query: 64  SDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCA 123
           +DV +VSAG  H++ +  +G +WA G N   QLG    ++++T    K   G    +V  
Sbjct: 392 TDVAAVSAGSNHTMILKKDGTLWAMGYNYFGQLGDDTTDNKSTPVQVKDDAGGFMTDVKT 451

Query: 124 AFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEK-----IVKVS 178
             A G  ++ + +DG+LW  G +++GQLG+G + T    P +V+A          + +VS
Sbjct: 452 VSAGGYHTTILKEDGTLWATGSNQQGQLGVG-NTTNRSTPVQVKASTAANDFMIDVKEVS 510

Query: 179 FGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSP--LDSNIDRSS------------ 224
            G  H     EDG L+  GY++DG++G+      ++P  +    D S             
Sbjct: 511 AGTYHTTILKEDGTLWATGYNSDGQLGDGTTTARTTPVRVKDTTDGSGFMTDVAAFSAGN 570

Query: 225 ------ESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEG---VEVVDIACGFDH 275
                 ++D  + ++    A +L  +G    +  P+  +          +V  ++ G+ H
Sbjct: 571 QYTMIVKTDDTLWATGSNNAGQL-GDGTVTARTTPVRVKASTTPNDFMTDVKAVSAGYYH 629

Query: 276 SLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDI 310
           +L+L  +  L + G N YGQLG         PV +
Sbjct: 630 TLILKNDETLWATGQNTYGQLGDSTTTTRTTPVQV 664



 Score = 71.6 bits (174), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 73/260 (28%), Positives = 114/260 (43%), Gaps = 49/260 (18%)

Query: 60  PGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRV----EG 115
           P +   V SVSAG+ H++ +  +G +WA GRNN  QLG G   +R T   P +V    +G
Sbjct: 331 PAVKVRVKSVSAGYSHTMILKTDGTLWATGRNNYGQLGVGDTTNRRT---PVQVWDSTDG 387

Query: 116 LDQVNVCAAFASGVVSSAI-GDDGSLWVWGKSKRGQLGLGKDITE-AIVPSRVEALAG-- 171
             ++   AA ++G   + I   DG+LW  G +  GQ  LG D T+    P +V+  AG  
Sbjct: 388 SVKMTDVAAVSAGSNHTMILKKDGTLWAMGYNYFGQ--LGDDTTDNKSTPVQVKDDAGGF 445

Query: 172 -EKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEI 230
              +  VS G  H     EDG L+  G +  G++G       S+P+            ++
Sbjct: 446 MTDVKTVSAGGYHTTILKEDGTLWATGSNQQGQLGVGNTTNRSTPV------------QV 493

Query: 231 SSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGS 290
            +ST                +M           ++V +++ G  H+ +L  +G L + G 
Sbjct: 494 KAST------------AANDFM-----------IDVKEVSAGTYHTTILKEDGTLWATGY 530

Query: 291 NVYGQLGREKQDMGMFPVDI 310
           N  GQLG         PV +
Sbjct: 531 NSDGQLGDGTTTARTTPVRV 550



 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 53/185 (28%), Positives = 84/185 (45%), Gaps = 21/185 (11%)

Query: 32  FGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRN 91
            GDG+  A   P  +        + T   G  +DV + SAG+ +++ V  +  +WA G N
Sbjct: 536 LGDGTTTARTTPVRVK-------DTTDGSGFMTDVAAFSAGNQYTMIVKTDDTLWATGSN 588

Query: 92  NEVQLGRGALESRATWNDPKRVEGL----DQVNVCAAFASGVVSSAI-GDDGSLWVWGKS 146
           N  QLG G + +R T   P RV+      D +    A ++G   + I  +D +LW  G++
Sbjct: 589 NAGQLGDGTVTARTT---PVRVKASTTPNDFMTDVKAVSAGYYHTLILKNDETLWATGQN 645

Query: 147 KRGQLGLGKDITEAIVPSRVEALAG-----EKIVKVSFGWGHALAQTEDGKLFGWGYSAD 201
             GQLG     T    P +V+A          +  VS G  H +    DG L+  G +  
Sbjct: 646 TYGQLG-DSTTTTRTTPVQVKASTTPNDFMTDVAAVSAGGYHTIILKTDGTLWATGNNGY 704

Query: 202 GRIGN 206
           G++G+
Sbjct: 705 GQLGD 709



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 36/96 (37%), Positives = 51/96 (53%), Gaps = 8/96 (8%)

Query: 64  SDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVN--- 120
           +DV +VSAG+YH+L + N+  +WA G+N   QLG     +R T   P +V+     N   
Sbjct: 618 TDVKAVSAGYYHTLILKNDETLWATGQNTYGQLGDSTTTTRTT---PVQVKASTTPNDFM 674

Query: 121 --VCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLG 154
             V A  A G  +  +  DG+LW  G +  GQLG G
Sbjct: 675 TDVAAVSAGGYHTIILKTDGTLWATGNNGYGQLGDG 710


>gi|21711763|gb|AAM75072.1| RE53774p [Drosophila melanogaster]
          Length = 1058

 Score = 87.0 bits (214), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 78/292 (26%), Positives = 123/292 (42%), Gaps = 54/292 (18%)

Query: 24  ASGTAVVSFGDGSQGALGLPTSLTGVGGDAYE----PTRVPGLP-SDVTSVSAGHYHSLA 78
           ASG  +  +G  S G LGL       GG   E    P+++P  P + V  V+ GH H+L 
Sbjct: 2   ASGKELYCWGSTSHGQLGL-------GGIEDEQILTPSQIPWTPDTAVQQVACGHRHTLF 54

Query: 79  VTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDG 138
           +T  G V+A G N+  QLG      R     P  +  L    +         S A+ D G
Sbjct: 55  LTATGKVYACGSNDYSQLGHDLPTKR-----PLLIPELQDYVIIQICCGSRHSLALSDWG 109

Query: 139 SLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGY 198
            +  WG +  GQLG   D     +P  V  L  + +V+++ G  H+LA T  G+L+ WG 
Sbjct: 110 QVLSWGDNDCGQLGHATDKEIVQLPKVVRQLVTKTVVQIACGNNHSLALTSCGELYSWGS 169

Query: 199 SADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEP 258
           +  G++G       +SP D      +  +  +  +T+                       
Sbjct: 170 NIYGQLG------VNSPND-----LTHCNYPLRLTTL----------------------- 195

Query: 259 FLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDI 310
               G+ +  IACG +HS ++ ++G +   G N  GQLG   +    +P  +
Sbjct: 196 ---LGIPLAAIACGGNHSFLISKSGAVFGWGRNNCGQLGLNDETNRSYPTQL 244



 Score = 64.3 bits (155), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 55/179 (30%), Positives = 88/179 (49%), Gaps = 6/179 (3%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSD-VTSVSAGHYHSLAVTNNGAVWA 87
           V+S+GD   G LG  T    V      P  V  L +  V  ++ G+ HSLA+T+ G +++
Sbjct: 111 VLSWGDNDCGQLGHATDKEIVQ----LPKVVRQLVTKTVVQIACGNNHSLALTSCGELYS 166

Query: 88  WGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSK 147
           WG N   QLG  +       N P R+  L  + + A    G  S  I   G+++ WG++ 
Sbjct: 167 WGSNIYGQLGVNSPNDLTHCNYPLRLTTLLGIPLAAIACGGNHSFLISKSGAVFGWGRNN 226

Query: 148 RGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGN 206
            GQLGL  D T    P++++ L    +  V+ G   ++  T +G +F  G  A G++G+
Sbjct: 227 CGQLGLN-DETNRSYPTQLKTLRTLGVRFVACGDEFSVFLTNEGGVFTCGAGAYGQLGH 284



 Score = 62.8 bits (151), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 70/235 (29%), Positives = 100/235 (42%), Gaps = 30/235 (12%)

Query: 140 LWVWGKSKRGQLGLGKDITEAIV-PSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWG- 197
           L+ WG +  GQLGLG    E I+ PS++       + +V+ G  H L  T  GK++  G 
Sbjct: 7   LYCWGSTSHGQLGLGGIEDEQILTPSQIPWTPDTAVQQVACGHRHTLFLTATGKVYACGS 66

Query: 198 --YSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKL---------VSEGM 246
             YS  G      + L    L   +          S +  +  Q L         +    
Sbjct: 67  NDYSQLGHDLPTKRPLLIPELQDYVIIQICCGSRHSLALSDWGQVLSWGDNDCGQLGHAT 126

Query: 247 EKEKYMPIIWEPFLVEGV---EVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDM 303
           +KE    I+  P +V  +    VV IACG +HSL L   G L S GSN+YGQLG      
Sbjct: 127 DKE----IVQLPKVVRQLVTKTVVQIACGNNHSLALTSCGELYSWGSNIYGQLGVNS--- 179

Query: 304 GMFPVDINF--HPVSISSGLGHSLA--ICEVRSSNVTGGARGIVSWGWNRSSQLG 354
              P D+    +P+ +++ LG  LA   C    S +   +  +  WG N   QLG
Sbjct: 180 ---PNDLTHCNYPLRLTTLLGIPLAAIACGGNHSFLISKSGAVFGWGRNNCGQLG 231


>gi|295789057|ref|NP_001171422.1| X-linked retinitis pigmentosa GTPase regulator isoform 2 [Mus
           musculus]
 gi|26325790|dbj|BAC26649.1| unnamed protein product [Mus musculus]
          Length = 972

 Score = 87.0 bits (214), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 83/310 (26%), Positives = 149/310 (48%), Gaps = 29/310 (9%)

Query: 32  FGDGSQGALGLPTSLTGVGGDAYEPTRVPGL-PSDVTSVSAGHYHSLAVTNNGAVWAWGR 90
           FG  + G LGL     G      +PT +  L P  V   + G  H+L  T+ G V+A G 
Sbjct: 97  FGSNNWGQLGL-----GSKAAIIKPTCIKALKPEKVKLAACGRNHTLVSTDTGGVYAAGG 151

Query: 91  NNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQ 150
           NNE QLG G  + R T++        D +   +A A+   S+A+ +DG L++WG +  GQ
Sbjct: 152 NNEGQLGLGDTDDRDTFHQIVFFTPADTIKQLSAGAN--TSAALTEDGKLFMWGDNSEGQ 209

Query: 151 LGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKA 210
           +GL +D +   +P  V    G+ I  +S G+ H+   T DG+L+ +G   +G++G   + 
Sbjct: 210 IGL-EDKSNVCIPHEV--TVGKPISWISCGYYHSAFVTMDGELYTFGEPENGKLGLPNEL 266

Query: 211 LESSPLDSNIDRSSESDQEISS---STIEKAQKLV-SEGMEKE------KYMPIIWEPFL 260
           L +      +    E   +++     T+   +K+V + G+ +        ++    EP +
Sbjct: 267 LMNHRSPQRVLGIPERVIQVACGGGHTVVLTEKVVYAFGLGQFGQLGLGTFLFETSEPKI 326

Query: 261 VEGV---EVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFHPVSI 317
           +E +   ++  I+CG +H+ ++   G+L + G   +G+LG     +GM      F P   
Sbjct: 327 IERIKDQKICHISCGENHTALMTELGLLYTFGDGRHGKLG-----LGMENFTNQFFPTLC 381

Query: 318 SSGLGHSLAI 327
           S+ L  ++ +
Sbjct: 382 SNFLRFAVQL 391



 Score = 64.3 bits (155), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 72/295 (24%), Positives = 115/295 (38%), Gaps = 68/295 (23%)

Query: 69  VSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASG 128
           +S G  H+  VT N  ++ +G NN  QLG G   S+A    P  ++ L    V  A    
Sbjct: 78  LSCGDEHTAIVTGNNKLYMFGSNNWGQLGLG---SKAAIIKPTCIKALKPEKVKLAACGR 134

Query: 129 VVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQT 188
             +    D G ++  G +  GQLGLG           V     + I ++S G   + A T
Sbjct: 135 NHTLVSTDTGGVYAAGGNNEGQLGLGDTDDRDTFHQIVFFTPADTIKQLSAGANTSAALT 194

Query: 189 EDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEK 248
           EDGKLF WG +++G+IG   K+    P +  + +                          
Sbjct: 195 EDGKLFMWGDNSEGQIGLEDKSNVCIPHEVTVGK-------------------------- 228

Query: 249 EKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLG---------RE 299
               PI W            I+CG+ HS  +  +G L + G    G+LG         R 
Sbjct: 229 ----PISW------------ISCGYYHSAFVTMDGELYTFGEPENGKLGLPNELLMNHRS 272

Query: 300 KQDMGMFPVDINFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLG 354
            Q +   P  +    + ++ G GH++ + E          + + ++G  +  QLG
Sbjct: 273 PQRVLGIPERV----IQVACGGGHTVVLTE----------KVVYAFGLGQFGQLG 313



 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 42/158 (26%), Positives = 72/158 (45%), Gaps = 7/158 (4%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAW 88
           + +FG+   G LGLP  L     +   P RV G+P  V  V+ G  H++ +T    V+A+
Sbjct: 249 LYTFGEPENGKLGLPNELL---MNHRSPQRVLGIPERVIQVACGGGHTVVLTEK-VVYAF 304

Query: 89  GRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKR 148
           G     QLG G      +  +PK +E +    +C        ++ + + G L+ +G  + 
Sbjct: 305 GLGQFGQLGLGTFLFETS--EPKIIERIKDQKICHISCGENHTALMTELGLLYTFGDGRH 362

Query: 149 GQLGLG-KDITEAIVPSRVEALAGEKIVKVSFGWGHAL 185
           G+LGLG ++ T    P+         +  ++ G  H L
Sbjct: 363 GKLGLGMENFTNQFFPTLCSNFLRFAVQLIACGGCHML 400


>gi|327268361|ref|XP_003218966.1| PREDICTED: x-linked retinitis pigmentosa GTPase regulator-like
           [Anolis carolinensis]
          Length = 788

 Score = 86.7 bits (213), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 83/294 (28%), Positives = 130/294 (44%), Gaps = 69/294 (23%)

Query: 11  HVNVLTS--RIFMRSASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGL-PSDVT 67
           H +V+T   +++M          FG  + G LG      G      +PT V  L P  V 
Sbjct: 46  HTSVVTENGKLYM----------FGSNNWGQLGF-----GSKNAVNKPTCVKALKPEKVK 90

Query: 68  SVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFAS 127
             + G  H+L  T  G V+A G N+E QLG G  E R+T++    +    + +     A+
Sbjct: 91  LAACGRNHTLICTEQGNVYAAGGNSEGQLGLGDTEERSTFH---LISFFTKQHKIKQLAA 147

Query: 128 GVVSSAI-GDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALA 186
           G  +SA+  +DG L +WG +  GQ+GLG D     VP +V+   G+ +  +S G+ H+  
Sbjct: 148 GSYTSAVLTEDGQLVMWGDNSEGQIGLG-DKAYVSVPHQVD--IGKPVSCISCGYYHSAL 204

Query: 187 QTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGM 246
            T+DG+L+ +G   +G++G   K L++  L                              
Sbjct: 205 ITQDGELYTFGEPENGKLGLSPKQLKNHKL------------------------------ 234

Query: 247 EKEKYMPIIWEPFLVEGV--EVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGR 298
                      P LV G+  +V  +ACG  H++VL   G + + G   YGQLG 
Sbjct: 235 -----------PQLVSGISGKVSKVACGGGHTVVLAE-GDVYTFGLGQYGQLGH 276



 Score = 67.4 bits (163), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 60/186 (32%), Positives = 92/186 (49%), Gaps = 24/186 (12%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYE--PTRVP-GLPSDVTSVSAGHYHSLAVTNNGAV 85
           +V +GD S+G +GL       G  AY   P +V  G P  V+ +S G+YHS  +T +G +
Sbjct: 161 LVMWGDNSEGQIGL-------GDKAYVSVPHQVDIGKP--VSCISCGYYHSALITQDGEL 211

Query: 86  WAWGRNNEVQLGRGALESRATWND--PKRVEGLD-QVNVCAAFASGVVSSAIGDDGSLWV 142
           + +G   E + G+  L  +   N   P+ V G+  +V+  A      V  A GD   ++ 
Sbjct: 212 YTFG---EPENGKLGLSPKQLKNHKLPQLVSGISGKVSKVACGGGHTVVLAEGD---VYT 265

Query: 143 WGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADG 202
           +G  + GQLG G  + E   P  V+ L   KI  ++ G  H    TE+G ++ +G   DG
Sbjct: 266 FGLGQYGQLGHGTFVFETSEPKTVDHLGKHKICHIACGENHTALITENGLMYTFG---DG 322

Query: 203 RIGNLG 208
           R G LG
Sbjct: 323 RHGKLG 328


>gi|449081281|sp|Q9R0X5.2|RPGR_MOUSE RecName: Full=X-linked retinitis pigmentosa GTPase regulator;
           Short=mRpgr; Flags: Precursor
          Length = 1001

 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 86/322 (26%), Positives = 154/322 (47%), Gaps = 36/322 (11%)

Query: 27  TAVVS-------FGDGSQGALGLPTSLTGVGGDAYEPTRVPGL-PSDVTSVSAGHYHSLA 78
           TA+V+       FG  + G LGL     G      +PT +  L P  V   + G  H+L 
Sbjct: 47  TAIVTGNNKLYMFGSNNWGQLGL-----GSKAAIIKPTCIKALKPEKVKLAACGRNHTLV 101

Query: 79  VTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDG 138
            T+ G V+A G NNE QLG G  + R T++        D +   +A A+   S+A+ +DG
Sbjct: 102 STDTGGVYAAGGNNEGQLGLGDTDDRDTFHQIVFFTPADTIKQLSAGAN--TSAALTEDG 159

Query: 139 SLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGY 198
            L++WG +  GQ+GL +D +   +P  V    G+ I  +S G+ H+   T DG+L+ +G 
Sbjct: 160 KLFMWGDNSEGQIGL-EDKSNVCIPHEV--TVGKPISWISCGYYHSAFVTMDGELYTFGE 216

Query: 199 SADGRIGNLGKALESSPLDSNIDRSSESDQEISS---STIEKAQKLV-SEGMEKE----- 249
             +G++G   + L +      +    E   +++     T+   +K+V + G+ +      
Sbjct: 217 PENGKLGLPNELLMNHRSPQRVLGIPERVIQVACGGGHTVVLTEKVVYAFGLGQFGQLGL 276

Query: 250 -KYMPIIWEPFLVEGV---EVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGM 305
             ++    EP ++E +   ++  I+CG +H+ ++   G+L + G   +G+LG     +GM
Sbjct: 277 GTFLFETSEPKIIERIKDQKICHISCGENHTALMTELGLLYTFGDGRHGKLG-----LGM 331

Query: 306 FPVDINFHPVSISSGLGHSLAI 327
                 F P   S+ L  ++ +
Sbjct: 332 ENFTNQFFPTLCSNFLRFAVQL 353



 Score = 64.3 bits (155), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 62/231 (26%), Positives = 96/231 (41%), Gaps = 49/231 (21%)

Query: 69  VSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGL--DQVNVCAAFA 126
           +S G  H+  VT N  ++ +G NN  QLG G   S+A    P  ++ L  ++V + A   
Sbjct: 40  LSCGDEHTAIVTGNNKLYMFGSNNWGQLGLG---SKAAIIKPTCIKALKPEKVKLAACGR 96

Query: 127 SGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALA 186
           +  + S   D G ++  G +  GQLGLG           V     + I ++S G   + A
Sbjct: 97  NHTLVST--DTGGVYAAGGNNEGQLGLGDTDDRDTFHQIVFFTPADTIKQLSAGANTSAA 154

Query: 187 QTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGM 246
            TEDGKLF WG +++G+IG   K+    P +  + +                        
Sbjct: 155 LTEDGKLFMWGDNSEGQIGLEDKSNVCIPHEVTVGK------------------------ 190

Query: 247 EKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLG 297
                 PI W            I+CG+ HS  +  +G L + G    G+LG
Sbjct: 191 ------PISW------------ISCGYYHSAFVTMDGELYTFGEPENGKLG 223



 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 42/158 (26%), Positives = 72/158 (45%), Gaps = 7/158 (4%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAW 88
           + +FG+   G LGLP  L     +   P RV G+P  V  V+ G  H++ +T    V+A+
Sbjct: 211 LYTFGEPENGKLGLPNELL---MNHRSPQRVLGIPERVIQVACGGGHTVVLTEK-VVYAF 266

Query: 89  GRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKR 148
           G     QLG G      +  +PK +E +    +C        ++ + + G L+ +G  + 
Sbjct: 267 GLGQFGQLGLGTFLFETS--EPKIIERIKDQKICHISCGENHTALMTELGLLYTFGDGRH 324

Query: 149 GQLGLG-KDITEAIVPSRVEALAGEKIVKVSFGWGHAL 185
           G+LGLG ++ T    P+         +  ++ G  H L
Sbjct: 325 GKLGLGMENFTNQFFPTLCSNFLRFAVQLIACGGCHML 362


>gi|297268307|ref|XP_001083991.2| PREDICTED: tryptophan 5-hydroxylase [Macaca mulatta]
          Length = 885

 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 97/325 (29%), Positives = 138/325 (42%), Gaps = 67/325 (20%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAW 88
           V+S G  S G LG+P            P  +      V  ++AG  H+LA T +G V+ W
Sbjct: 549 VLSCGSNSFGQLGVPHG----PRRCVVPQAIELHKEKVVCIAAGLRHALAATASGIVFQW 604

Query: 89  GRNNEVQLGR-----GALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVW 143
           G       GR       L    T  +P RV GL+        A    S+++ D G ++VW
Sbjct: 605 G-TGLASCGRRLCPGQTLPLFFTAKEPSRVTGLENSKAMCVLAGSDHSASLTDAGEVYVW 663

Query: 144 GKSKRGQLGLGKDITEAI---VPSRVEA--LAGEKIVKVSFGWGHALAQTEDGKLFGWGY 198
           G +K GQL      TEA    VP ++EA     EK+  V  GW H +AQTE GK+F WG 
Sbjct: 664 GSNKHGQLA-----TEAAFLPVPQKIEAHCFQNEKVTAVWSGWTHLVAQTETGKVFTWG- 717

Query: 199 SADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEP 258
            AD   G LG+ LE+                              EG + EK    +   
Sbjct: 718 RAD--YGQLGRKLET-----------------------------YEGWKLEKQDSFLPCS 746

Query: 259 FLVEGVE--------VVDIACGFDHSL-VLGRNGVLLSCGSNVYGQL--GREKQDMGMFP 307
            L+  +           +++CG +H+L V+G  GV  S G N +G    G E       P
Sbjct: 747 RLLNNMPSSLHCLTGATEVSCGSEHNLAVIG--GVCYSWGWNEHGMCGDGTEANIWAPKP 804

Query: 308 VD--INFHPVSISSGLGHSLAICEV 330
           V   ++   + +  G GHSLA+C++
Sbjct: 805 VQALLSSSGLLVGCGAGHSLALCQL 829



 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 98/376 (26%), Positives = 150/376 (39%), Gaps = 55/376 (14%)

Query: 33  GDGSQGALGLPTSLTGVGGDAYEPTRVPGL--PSDVTSVSAGHYHSLAVTNNGAVWAWGR 90
           G  S G LGL     G   D   P ++     P  V  ++ G  HS  VT+ G ++  G 
Sbjct: 448 GANSYGQLGL-----GHKEDVLLPQQLNDFCKPRSVRRITGGGGHSAVVTDIGDLFVCGL 502

Query: 91  NNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQ 150
           N + QLG G  E    +   K + G     V   +   ++   + ++G +   G +  GQ
Sbjct: 503 NKDGQLGLGHTEDIPYFTPCKSLFGCPIQQVACGWDFTII---LTENGQVLSCGSNSFGQ 559

Query: 151 LGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGW--GYSADGRIGNLG 208
           LG+       +VP  +E L  EK+V ++ G  HALA T  G +F W  G ++ GR    G
Sbjct: 560 LGVPHGPRRCVVPQAIE-LHKEKVVCIAAGLRHALAATASGIVFQWGTGLASCGRRLCPG 618

Query: 209 KALESSPLDSNIDRSS-----ESDQEIS-------SSTIEKAQKLVSEGMEKE------- 249
           + L   PL       S     E+ + +        S+++  A ++   G  K        
Sbjct: 619 QTL---PLFFTAKEPSRVTGLENSKAMCVLAGSDHSASLTDAGEVYVWGSNKHGQLATEA 675

Query: 250 KYMPIIW--EPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGR--------- 298
            ++P+    E    +  +V  +  G+ H +     G + + G   YGQLGR         
Sbjct: 676 AFLPVPQKIEAHCFQNEKVTAVWSGWTHLVAQTETGKVFTWGRADYGQLGRKLETYEGWK 735

Query: 299 -EKQDMGMFPVD--INFHPVSISSGLGHSLAIC-EVRSSNVTGGARGIVSWGWNRSSQLG 354
            EKQD    P    +N  P S+    G +   C    +  V GG     SWGWN     G
Sbjct: 736 LEKQD-SFLPCSRLLNNMPSSLHCLTGATEVSCGSEHNLAVIGGV--CYSWGWNEHGMCG 792

Query: 355 RMGPDNV--PLVVEGL 368
                N+  P  V+ L
Sbjct: 793 DGTEANIWAPKPVQAL 808



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 93/363 (25%), Positives = 149/363 (41%), Gaps = 62/363 (17%)

Query: 31  SFGDGSQGALGLPTSLTGVGGDAYEP-TRVPGLPSDVTSVSAGH---YHSLAVTNNGAVW 86
           SF D  +       ++    G  Y P TR   +  D  S+++      H L V ++    
Sbjct: 388 SFEDAKEKMREFTKTIKRPFGVKYNPYTRSIQILKDTKSITSAMNELQHDLDVVSDAL-- 445

Query: 87  AWGRNNEVQLGRGALES---RATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVW 143
           A G N+  QLG G  E        ND  +   + ++        G  S+ + D G L+V 
Sbjct: 446 AKGANSYGQLGLGHKEDVLLPQQLNDFCKPRSVRRIT-----GGGGHSAVVTDIGDLFVC 500

Query: 144 GKSKRGQLGLGKDITEAI-VPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADG 202
           G +K GQLGLG   TE I   +  ++L G  I +V+ GW   +  TE+G++   G ++ G
Sbjct: 501 GLNKDGQLGLGH--TEDIPYFTPCKSLFGCPIQQVACGWDFTIILTENGQVLSCGSNSFG 558

Query: 203 RIGNLGKALESSPLDSNIDRSSESDQE---ISSSTIEKAQKLVSEGMEKE---------- 249
           ++G     +   P    + ++ E  +E     ++ +  A    + G+  +          
Sbjct: 559 QLG-----VPHGPRRCVVPQAIELHKEKVVCIAAGLRHALAATASGIVFQWGTGLASCGR 613

Query: 250 -----KYMPIIW---EPFLVEGVEVVDIAC---GFDHSLVLGRNGVLLSCGSNVYGQLGR 298
                + +P+ +   EP  V G+E     C   G DHS  L   G +   GSN +GQL  
Sbjct: 614 RLCPGQTLPLFFTAKEPSRVTGLENSKAMCVLAGSDHSASLTDAGEVYVWGSNKHGQLAT 673

Query: 299 EKQDMGMFPVDINFHP------VSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQ 352
           E   + + P  I  H        ++ SG  H +A  E      TG    + +WG     Q
Sbjct: 674 EAAFLPV-PQKIEAHCFQNEKVTAVWSGWTHLVAQTE------TG---KVFTWGRADYGQ 723

Query: 353 LGR 355
           LGR
Sbjct: 724 LGR 726


>gi|347536334|ref|YP_004843759.1| RCC1 (Regulator of chromosome Condensation) repeat domain
           containing protein [Flavobacterium branchiophilum FL-15]
 gi|345529492|emb|CCB69522.1| RCC1 (Regulator of Chromosome Condensation) repeat domain protein
           precursor [Flavobacterium branchiophilum FL-15]
          Length = 450

 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 80/288 (27%), Positives = 125/288 (43%), Gaps = 61/288 (21%)

Query: 12  VNVLTSRI-FMRSASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVS 70
           VN + ++  F+   S   + ++G    G LG  T++     +   P ++ G  ++ T +S
Sbjct: 122 VNFIAAQYHFLAIKSNGTLWTWGVNQYGQLGDGTNV-----NKNSPIQI-GTSTNWTQIS 175

Query: 71  AGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVV 130
            G  HSLA+ ++G +WAWG N+  QLG G   ++   N P ++   +  N     A  + 
Sbjct: 176 GGDRHSLAIKSDGTLWAWGANDFAQLGDGTTTAK---NFPIQIGTAN--NWAKVEAGELC 230

Query: 131 SSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTED 190
           S AI  DG+LW WG +   QLG G   T  +VP+++        VKV  G  H LA   +
Sbjct: 231 SFAIKTDGTLWAWGYNYFSQLGNGNSQT-LVVPTQIG--TSTNWVKVISGHSHTLAINNN 287

Query: 191 GKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEK 250
           GKL+ WG +  G++G  G  + +         ++E+D                       
Sbjct: 288 GKLYSWGSNNWGQLGGGGNTINA--------VNNETDWN--------------------- 318

Query: 251 YMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGR 298
                             I+ G+ HSLVL  +  L   G N YGQLG 
Sbjct: 319 -----------------KISVGYTHSLVLKSDNSLWVFGENYYGQLGN 349



 Score = 70.5 bits (171), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 77/292 (26%), Positives = 111/292 (38%), Gaps = 62/292 (21%)

Query: 45  SLTGVGGDAYE---------PTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQ 95
           SL G G D +          P ++ G   D  +  A  YH LA+ +NG +W WG N   Q
Sbjct: 92  SLWGWGDDPFSSDGPNYGSTPIQI-GTSIDWVNFIAAQYHFLAIKSNGTLWTWGVNQYGQ 150

Query: 96  LGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGK 155
           LG G   ++   N P ++      N          S AI  DG+LW WG +   QLG G 
Sbjct: 151 LGDGTNVNK---NSPIQIG--TSTNWTQISGGDRHSLAIKSDGTLWAWGANDFAQLGDGT 205

Query: 156 DITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSP 215
             T    P  ++        KV  G   + A   DG L+ WGY+   ++GN        P
Sbjct: 206 -TTAKNFP--IQIGTANNWAKVEAGELCSFAIKTDGTLWAWGYNYFSQLGNGNSQTLVVP 262

Query: 216 LDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDH 275
                        +I +ST                                V +  G  H
Sbjct: 263 ------------TQIGTST------------------------------NWVKVISGHSH 280

Query: 276 SLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFHPVSISSGLGHSLAI 327
           +L +  NG L S GSN +GQLG     +     + +++ +S+  G  HSL +
Sbjct: 281 TLAINNNGKLYSWGSNNWGQLGGGGNTINAVNNETDWNKISV--GYTHSLVL 330



 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/107 (33%), Positives = 55/107 (51%), Gaps = 20/107 (18%)

Query: 56  PTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRG-----ALESRATWNDP 110
           PT++ G  ++   V +GH H+LA+ NNG +++WG NN  QLG G     A+ +   WN  
Sbjct: 262 PTQI-GTSTNWVKVISGHSHTLAINNNGKLYSWGSNNWGQLGGGGNTINAVNNETDWNK- 319

Query: 111 KRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDI 157
                     +   +   +V   +  D SLWV+G++  GQLG G  I
Sbjct: 320 ----------ISVGYTHSLV---LKSDNSLWVFGENYYGQLGNGITI 353



 Score = 52.4 bits (124), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 65/290 (22%), Positives = 117/290 (40%), Gaps = 71/290 (24%)

Query: 69  VSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRV-EGLDQVNVCAAFAS 127
           V  GH++S  + N+G +W WG+N+      G L++ ++   P ++    +  N+ +++  
Sbjct: 32  VDGGHWNSFGIKNDGTLWGWGQND------GRLQTTSS--VPIQIGSNTNWSNISSSYWY 83

Query: 128 GVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQ 187
            ++  +   DGSLW WG       G     T   + + ++ +     +   +   H LA 
Sbjct: 84  TLLQKS---DGSLWGWGDDPFSSDGPNYGSTPIQIGTSIDWV---NFIAAQY---HFLAI 134

Query: 188 TEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGME 247
             +G L+ WG +  G++G+     ++SP+            +I +ST             
Sbjct: 135 KSNGTLWTWGVNQYGQLGDGTNVNKNSPI------------QIGTST------------- 169

Query: 248 KEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFP 307
                                I+ G  HSL +  +G L + G+N + QLG        FP
Sbjct: 170 -----------------NWTQISGGDRHSLAIKSDGTLWAWGANDFAQLGDGTTTAKNFP 212

Query: 308 VDINF--HPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGR 355
           + I    +   + +G   S AI        T G   + +WG+N  SQLG 
Sbjct: 213 IQIGTANNWAKVEAGELCSFAI-------KTDGT--LWAWGYNYFSQLGN 253


>gi|452823021|gb|EME30035.1| E3 ubiquitin-protein ligase HERC2 [Galdieria sulphuraria]
          Length = 432

 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 87/293 (29%), Positives = 132/293 (45%), Gaps = 27/293 (9%)

Query: 78  AVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDD 137
           A+ N   +  +G N   QLG+G        + P  VE L    +    A    ++AI  D
Sbjct: 53  ALENGTLLTTFGLNLIGQLGQG---HERPADRPFPVEALSGKRIVYVAAGDSCTAAISLD 109

Query: 138 GSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWG 197
           G ++ WG  + G+LG   D  E + P  VEAL G+ IVKVS G  H  A  +DG L+ WG
Sbjct: 110 GDVYTWGSGEYGKLGHNDDSNENL-PRLVEALKGKNIVKVSIGGNHMAAIDKDGHLYCWG 168

Query: 198 YSADGRIGNLGKALESSPLDSNIDR----SSESDQEISSSTIEKA---------QKLVSE 244
            +A    G          +  ++++    S    +  +++  EK          +  +  
Sbjct: 169 RAASAGSGGTEHVFIPRLIKGDLEKEKVISVSCGRSHTAAVTEKGEVWTWGNGYEGELGH 228

Query: 245 GMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMG 304
           G +  +Y P   +  L E  +VVD+ACG D ++ +  +G L SCG++ YGQLG  +    
Sbjct: 229 GEKNSQYQPKKVQS-LTE--KVVDVACGRDFTIFVCESG-LYSCGADDYGQLGLGRSHGE 284

Query: 305 MFPVDINFHPVSIS-SGLGHSLAICEVRSSNVTGGARGIV-SWGWNRSSQLGR 355
            F       P S+S +GL   +AI          G  G+V +WG  R  QLG 
Sbjct: 285 RFVQT----PRSLSGTGLSDVVAISAGDYHVCALGRDGLVYTWGLGREGQLGH 333



 Score = 84.3 bits (207), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 99/353 (28%), Positives = 151/353 (42%), Gaps = 41/353 (11%)

Query: 25  SGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSD-VTSVSAGHYHSLAVTNNG 83
           +GT + +FG    G LG      G    A  P  V  L    +  V+AG   + A++ +G
Sbjct: 56  NGTLLTTFGLNLIGQLG-----QGHERPADRPFPVEALSGKRIVYVAAGDSCTAAISLDG 110

Query: 84  AVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVW 143
            V+ WG     +LG       +  N P+ VE L   N+      G   +AI  DG L+ W
Sbjct: 111 DVYTWGSGEYGKLGH---NDDSNENLPRLVEALKGKNIVKVSIGGNHMAAIDKDGHLYCW 167

Query: 144 GKSKRGQLGLGKDITEAIVPSRVEA-LAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADG 202
           G++     G         +P  ++  L  EK++ VS G  H  A TE G+++ WG   +G
Sbjct: 168 GRAASAGSG---GTEHVFIPRLIKGDLEKEKVISVSCGRSHTAAVTEKGEVWTWGNGYEG 224

Query: 203 RIGNLGKALESSP------LDSNIDRSSESDQEI----SSSTIEKAQKLVSEGMEKEKYM 252
            +G+  K  +  P       +  +D +   D  I    S      A      G+ +    
Sbjct: 225 ELGHGEKNSQYQPKKVQSLTEKVVDVACGRDFTIFVCESGLYSCGADDYGQLGLGRSHGE 284

Query: 253 PIIWEPFLVEGV---EVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGR-EKQDMGMF-P 307
             +  P  + G    +VV I+ G  H   LGR+G++ + G    GQLG  EK D  +  P
Sbjct: 285 RFVQTPRSLSGTGLSDVVAISAGDYHVCALGRDGLVYTWGLGREGQLGHGEKADCSLAKP 344

Query: 308 VD--INFHPVSISSGLGHSLAICEVRSSNVTGGARGIV-SWGWNRSSQLGRMG 357
           VD   NF  V ++ G GH+ A+ +           G++ +WG  R  QLGR G
Sbjct: 345 VDNLRNFEIVQVACGGGHTAAVTK----------DGVLYTWGRGRDGQLGRGG 387



 Score = 77.8 bits (190), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 78/284 (27%), Positives = 116/284 (40%), Gaps = 74/284 (26%)

Query: 66  VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAF 125
           V SVS G  H+ AVT  G VW WG   E +LG G   S+     PK+V+ L +       
Sbjct: 196 VISVSCGRSHTAAVTEKGEVWTWGNGYEGELGHGEKNSQY---QPKKVQSLTEK------ 246

Query: 126 ASGVVSSAIGDDGSLWVW-------GKSKRGQLGLGKDITEAIV--PSRVEALAGEKIVK 176
              VV  A G D +++V        G    GQLGLG+   E  V  P  +       +V 
Sbjct: 247 ---VVDVACGRDFTIFVCESGLYSCGADDYGQLGLGRSHGERFVQTPRSLSGTGLSDVVA 303

Query: 177 VSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALES--SPLDSNIDRSSESDQEISSST 234
           +S G  H  A   DG ++ WG   +G++G+  KA  S   P+D+                
Sbjct: 304 ISAGDYHVCALGRDGLVYTWGLGREGQLGHGEKADCSLAKPVDN---------------- 347

Query: 235 IEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYG 294
                                     +   E+V +ACG  H+  + ++GVL + G    G
Sbjct: 348 --------------------------LRNFEIVQVACGGGHTAAVTKDGVLYTWGRGRDG 381

Query: 295 QLGR--EKQDMGMF---PVDINFHP----VSISSGLGHSLAICE 329
           QLGR  E + +  +   PV +   P    + ++ G  HS  +C+
Sbjct: 382 QLGRGGELESIASYRTSPVQVTSLPAGAVLYVTLGSDHSAVLCQ 425



 Score = 77.8 bits (190), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 59/185 (31%), Positives = 92/185 (49%), Gaps = 8/185 (4%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAW 88
           V ++G+G +G LG      G     Y+P +V  L   V  V+ G   ++ V  +G +++ 
Sbjct: 215 VWTWGNGYEGELG-----HGEKNSQYQPKKVQSLTEKVVDVACGRDFTIFVCESG-LYSC 268

Query: 89  GRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKR 148
           G ++  QLG G          P+ + G    +V A  A      A+G DG ++ WG  + 
Sbjct: 269 GADDYGQLGLGRSHGERFVQTPRSLSGTGLSDVVAISAGDYHVCALGRDGLVYTWGLGRE 328

Query: 149 GQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLG 208
           GQLG G+   +  +   V+ L   +IV+V+ G GH  A T+DG L+ WG   DG++G  G
Sbjct: 329 GQLGHGEK-ADCSLAKPVDNLRNFEIVQVACGGGHTAAVTKDGVLYTWGRGRDGQLGR-G 386

Query: 209 KALES 213
             LES
Sbjct: 387 GELES 391



 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 60/207 (28%), Positives = 93/207 (44%), Gaps = 32/207 (15%)

Query: 2   RLLKSVVHNHVNVLTSRIFMRSASGTAVVSFGDGSQGALGL-----------PTSLTGVG 50
           + ++S+    V+V   R F      + + S G    G LGL           P SL+G G
Sbjct: 238 KKVQSLTEKVVDVACGRDFTIFVCESGLYSCGADDYGQLGLGRSHGERFVQTPRSLSGTG 297

Query: 51  GDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDP 110
                        SDV ++SAG YH  A+  +G V+ WG   E QLG G    +A  +  
Sbjct: 298 ------------LSDVVAISAGDYHVCALGRDGLVYTWGLGREGQLGHG---EKADCSLA 342

Query: 111 KRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIV-----PSR 165
           K V+ L    +      G  ++A+  DG L+ WG+ + GQLG G ++ E+I      P +
Sbjct: 343 KPVDNLRNFEIVQVACGGGHTAAVTKDGVLYTWGRGRDGQLGRGGEL-ESIASYRTSPVQ 401

Query: 166 VEALAGEKIVKVSFGWGHALAQTEDGK 192
           V +L    ++ V+ G  H+    +D K
Sbjct: 402 VTSLPAGAVLYVTLGSDHSAVLCQDMK 428


>gi|387019663|gb|AFJ51949.1| putative E3 ubiquitin-protein ligase HERC4-like [Crotalus
           adamanteus]
          Length = 1052

 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 62/244 (25%), Positives = 110/244 (45%), Gaps = 43/244 (17%)

Query: 56  PTRVPGLPS-DVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVE 114
           P +V  L + ++ +VS G  H+LA+ + G V+AWG   + QLG    E       P+ ++
Sbjct: 75  PEQVGALDAQNIVTVSCGEAHTLALNDKGQVYAWGFAVDGQLGLSGTEEYTRV--PRNIK 132

Query: 115 GLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKI 174
            L  + +         S A+     ++ WG++K GQLGLG +  +   P  +++L G   
Sbjct: 133 SLSDIQIVQVACGYFHSLALSKGSEVFSWGQNKYGQLGLGYEYKKQASPQIIKSLLGIPF 192

Query: 175 VKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSST 234
            +++ G  H+   T  G +FGWG +  G++G          L+                 
Sbjct: 193 AQIAAGGAHSFVLTLSGAVFGWGRNKFGQLG----------LND---------------- 226

Query: 235 IEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYG 294
                       E ++Y+P + +   +   ++V I+CG DH+  L + G + + G+  YG
Sbjct: 227 ------------ENDRYVPNLLKS--LRSQKIVYISCGEDHTAALTKEGGVFTFGAGGYG 272

Query: 295 QLGR 298
           QLG 
Sbjct: 273 QLGH 276



 Score = 81.3 bits (199), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 61/192 (31%), Positives = 100/192 (52%), Gaps = 16/192 (8%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVP-GLPS----DVTSVSAGHYHSLAVTNNG 83
           V ++G    G LGL       G + Y  TRVP  + S     +  V+ G++HSLA++   
Sbjct: 105 VYAWGFAVDGQLGLS------GTEEY--TRVPRNIKSLSDIQIVQVACGYFHSLALSKGS 156

Query: 84  AVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVW 143
            V++WG+N   QLG G    +     P+ ++ L  +      A G  S  +   G+++ W
Sbjct: 157 EVFSWGQNKYGQLGLGYEYKKQA--SPQIIKSLLGIPFAQIAAGGAHSFVLTLSGAVFGW 214

Query: 144 GKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGR 203
           G++K GQLGL  D  +  VP+ +++L  +KIV +S G  H  A T++G +F +G    G+
Sbjct: 215 GRNKFGQLGLN-DENDRYVPNLLKSLRSQKIVYISCGEDHTAALTKEGGVFTFGAGGYGQ 273

Query: 204 IGNLGKALESSP 215
           +G+   A E +P
Sbjct: 274 LGHNSTAHEINP 285



 Score = 75.1 bits (183), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 71/284 (25%), Positives = 115/284 (40%), Gaps = 75/284 (26%)

Query: 85  VWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSA---------IG 135
           +  WG  +  QLG G ++      +P+R         C+ F +  V            + 
Sbjct: 1   MLCWGNASFGQLGLGGIDEEIVL-EPRR---------CSFFVNKKVQDVGCGLRHTVFVL 50

Query: 136 DDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFG 195
           DDG+++  G +  GQLG  K       P +V AL  + IV VS G  H LA  + G+++ 
Sbjct: 51  DDGTVYTCGCNDLGQLGHEKSRKR---PEQVGALDAQNIVTVSCGEAHTLALNDKGQVYA 107

Query: 196 WGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPII 255
           WG++ DG++G L    E + +  NI   S+                              
Sbjct: 108 WGFAVDGQLG-LSGTEEYTRVPRNIKSLSD------------------------------ 136

Query: 256 WEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLG-----REKQDMGMFPVDI 310
                   +++V +ACG+ HSL L +   + S G N YGQLG     +++    +    +
Sbjct: 137 --------IQIVQVACGYFHSLALSKGSEVFSWGQNKYGQLGLGYEYKKQASPQIIKSLL 188

Query: 311 NFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLG 354
                 I++G  HS  +       ++G   G   WG N+  QLG
Sbjct: 189 GIPFAQIAAGGAHSFVL------TLSGAVFG---WGRNKFGQLG 223



 Score = 40.8 bits (94), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 42/138 (30%), Positives = 62/138 (44%), Gaps = 13/138 (9%)

Query: 20  FMRSASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSD-VTSVSAGHYHSLA 78
           F+ + SG AV  +G    G LGL         D Y P  +  L S  +  +S G  H+ A
Sbjct: 203 FVLTLSG-AVFGWGRNKFGQLGLNDE-----NDRYVPNLLKSLRSQKIVYISCGEDHTAA 256

Query: 79  VTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGV--VSSAIGD 136
           +T  G V+ +G     QLG     S A   +P++V  L   N+    A G    S+ +  
Sbjct: 257 LTKEGGVFTFGAGGYGQLGHN---STAHEINPRKVFEL-MGNIVTQIACGRQHTSAFVPS 312

Query: 137 DGSLWVWGKSKRGQLGLG 154
            G ++ +G    GQLG+G
Sbjct: 313 TGRIYSFGLGGNGQLGMG 330


>gi|427794767|gb|JAA62835.1| Putative hect e3 ubiquitin ligase culex quinquefasciatus hect e3
           ubiquitin ligase, partial [Rhipicephalus pulchellus]
          Length = 1181

 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 81/288 (28%), Positives = 127/288 (44%), Gaps = 46/288 (15%)

Query: 23  SASGTAVVSFGDGSQGALGLPTSLTGVGGDA--YEPTRVPGLPSD-VTSVSAGHYHSLAV 79
           S +   + S+G G  G LGL     GV  +    +P RV    +  V  V+ GH H+L +
Sbjct: 47  SGAPMLLYSWGLGPNGELGLTQGKDGVDTETPVSQPERVRRFGTRAVREVACGHKHTLVL 106

Query: 80  TNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGS 139
             NG+V++ G N+  QLG+       +    ++V  L    + A       S A+ D G 
Sbjct: 107 LANGSVYSCGANDFGQLGQDR-----SMRKLEQVAALSAHEIRAVACGEAHSLALSDAGQ 161

Query: 140 LWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYS 199
           ++ WG ++ GQLG G +    + P  ++ LA   IV+++ G  H LA   +G+LF WG +
Sbjct: 162 VFSWGCNRNGQLGCGTEEESRLRPKVIKKLATLHIVQIACGAVHCLALANNGELFSWGGN 221

Query: 200 ADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPF 259
           A G++G LG+                      S+  E+  + VS                
Sbjct: 222 ASGQLG-LGR---------------------DSTGNERLPRRVSH--------------- 244

Query: 260 LVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFP 307
            + GV +  +ACG  HS+ L  +G +   G N  GQLG   Q   + P
Sbjct: 245 -LVGVPLALVACGAMHSVGLTPSGTVFVWGRNSCGQLGLSDQRDRLHP 291



 Score = 75.9 bits (185), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 48/150 (32%), Positives = 78/150 (52%), Gaps = 2/150 (1%)

Query: 66  VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAF 125
           +  ++ G  H LA+ NNG +++WG N   QLG G  +S      P+RV  L  V +    
Sbjct: 196 IVQIACGAVHCLALANNGELFSWGGNASGQLGLGR-DSTGNERLPRRVSHLVGVPLALVA 254

Query: 126 ASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHAL 185
              + S  +   G+++VWG++  GQLGL  D  + + P+ ++ L  ++I  V  G  H  
Sbjct: 255 CGAMHSVGLTPSGTVFVWGRNSCGQLGLS-DQRDRLHPTVLKPLRSQRIKHVCCGENHTA 313

Query: 186 AQTEDGKLFGWGYSADGRIGNLGKALESSP 215
           A T DG +F +G    G++G+  K  E+ P
Sbjct: 314 ALTADGGVFTFGAGTYGQLGHGVKVNEAVP 343



 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 71/229 (31%), Positives = 108/229 (47%), Gaps = 26/229 (11%)

Query: 24  ASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNG 83
           A+   + S+G  + G LGL    TG        + + G+P  +  V+ G  HS+ +T +G
Sbjct: 210 ANNGELFSWGGNASGQLGLGRDSTGNERLPRRVSHLVGVP--LALVACGAMHSVGLTPSG 267

Query: 84  AVWAWGRNNEVQLGRGALESR--ATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLW 141
            V+ WGRN+  QLG      R   T   P R + +   +VC        ++A+  DG ++
Sbjct: 268 TVFVWGRNSCGQLGLSDQRDRLHPTVLKPLRSQRIK--HVCCGENH---TAALTADGGVF 322

Query: 142 VWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQT-EDGKLFGWGYSA 200
            +G    GQLG G  + EA VP RV  L G  I ++S G  H +A   + G+L+ +G   
Sbjct: 323 TFGAGTYGQLGHGVKVNEA-VPRRVVELMGTAISQLSCGRCHTVAYAPQSGRLYIFGLGM 381

Query: 201 DGRIGNLGKALESSPL-------------DSNIDRSSESDQEISSSTIE 236
            G++GN    LESS L              S ++RS     +IS + IE
Sbjct: 382 SGQLGN--GTLESSALPVTVPGLWHGVTHPSQVNRSPSPRPQISQNAIE 428



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 67/273 (24%), Positives = 109/273 (39%), Gaps = 51/273 (18%)

Query: 86  WAWGRNNEVQL--GRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVW 143
           W  G N E+ L  G+  +++    + P+RV       V         +  +  +GS++  
Sbjct: 56  WGLGPNGELGLTQGKDGVDTETPVSQPERVRRFGTRAVREVACGHKHTLVLLANGSVYSC 115

Query: 144 GKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGR 203
           G +  GQLG  + + +     +V AL+  +I  V+ G  H+LA ++ G++F WG + +G+
Sbjct: 116 GANDFGQLGQDRSMRKL---EQVAALSAHEIRAVACGEAHSLALSDAGQVFSWGCNRNGQ 172

Query: 204 IGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEG 263
           +G                  +E +  +    I+K   L                      
Sbjct: 173 LGC----------------GTEEESRLRPKVIKKLATL---------------------- 194

Query: 264 VEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFHPVSISSGLGH 323
             +V IACG  H L L  NG L S G N  GQLG  +   G   +     P  +S  +G 
Sbjct: 195 -HIVQIACGAVHCLALANNGELFSWGGNASGQLGLGRDSTGNERL-----PRRVSHLVGV 248

Query: 324 SLAICEVRSSNVTGGARG--IVSWGWNRSSQLG 354
            LA+    + +  G      +  WG N   QLG
Sbjct: 249 PLALVACGAMHSVGLTPSGTVFVWGRNSCGQLG 281


>gi|5824124|emb|CAB54041.1| RPGR protein [Mus musculus]
          Length = 1001

 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 86/322 (26%), Positives = 154/322 (47%), Gaps = 36/322 (11%)

Query: 27  TAVVS-------FGDGSQGALGLPTSLTGVGGDAYEPTRVPGL-PSDVTSVSAGHYHSLA 78
           TA+V+       FG  + G LGL     G      +PT +  L P  V   + G  H+L 
Sbjct: 47  TAIVTGNNKLYMFGSNNWGQLGL-----GSKAAIIKPTCIKALKPEKVKLAACGRNHTLV 101

Query: 79  VTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDG 138
            T+ G V+A G NNE QLG G  + R T++        D +   +A A+   S+A+ +DG
Sbjct: 102 STDTGGVYAAGGNNEGQLGLGDTDDRDTFHQIVFFTPADTIKQLSAGAN--TSAALTEDG 159

Query: 139 SLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGY 198
            L++WG +  GQ+GL +D +   +P  V    G+ I  +S G+ H+   T DG+L+ +G 
Sbjct: 160 KLFMWGDNSEGQIGL-EDKSNVCIPHEV--TVGKPISWISCGYYHSAFVTMDGELYTFGE 216

Query: 199 SADGRIGNLGKALESSPLDSNIDRSSESDQEISS---STIEKAQKLV-SEGMEKE----- 249
             +G++G   + L +      +    E   +++     T+   +K+V + G+ +      
Sbjct: 217 PENGKLGLPNELLMNHRSPQRVLGIPERVIQVACGGGHTVVLTEKVVYAFGLGQFGQLGL 276

Query: 250 -KYMPIIWEPFLVEGV---EVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGM 305
             ++    EP ++E +   ++  I+CG +H+ ++   G+L + G   +G+LG     +GM
Sbjct: 277 GTFLFETSEPKIIERIKDQKICHISCGENHTALMTELGLLYTFGDGRHGKLG-----LGM 331

Query: 306 FPVDINFHPVSISSGLGHSLAI 327
                 F P   S+ L  ++ +
Sbjct: 332 ENFTNQFFPTLCSNFLRFAVQL 353



 Score = 64.3 bits (155), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 61/229 (26%), Positives = 91/229 (39%), Gaps = 45/229 (19%)

Query: 69  VSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASG 128
           +S G  H+  VT N  ++ +G NN  QLG G   S+A    P  ++ L    V  A    
Sbjct: 40  LSCGDEHTAIVTGNNKLYMFGSNNWGQLGLG---SKAAIIKPTCIKALKPEKVKLAACGR 96

Query: 129 VVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQT 188
             +    D G ++  G +  GQLGLG           V     + I ++S G   + A T
Sbjct: 97  NHTLVSTDTGGVYAAGGNNEGQLGLGDTDDRDTFHQIVFFTPADTIKQLSAGANTSAALT 156

Query: 189 EDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEK 248
           EDGKLF WG +++G+IG   K+    P +  + +                          
Sbjct: 157 EDGKLFMWGDNSEGQIGLEDKSNVCIPHEVTVGK-------------------------- 190

Query: 249 EKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLG 297
               PI W            I+CG+ HS  +  +G L + G    G+LG
Sbjct: 191 ----PISW------------ISCGYYHSAFVTMDGELYTFGEPENGKLG 223



 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 42/158 (26%), Positives = 72/158 (45%), Gaps = 7/158 (4%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAW 88
           + +FG+   G LGLP  L     +   P RV G+P  V  V+ G  H++ +T    V+A+
Sbjct: 211 LYTFGEPENGKLGLPNELL---MNHRSPQRVLGIPERVIQVACGGGHTVVLTEK-VVYAF 266

Query: 89  GRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKR 148
           G     QLG G      +  +PK +E +    +C        ++ + + G L+ +G  + 
Sbjct: 267 GLGQFGQLGLGTFLFETS--EPKIIERIKDQKICHISCGENHTALMTELGLLYTFGDGRH 324

Query: 149 GQLGLG-KDITEAIVPSRVEALAGEKIVKVSFGWGHAL 185
           G+LGLG ++ T    P+         +  ++ G  H L
Sbjct: 325 GKLGLGMENFTNQFFPTLCSNFLRFAVQLIACGGCHML 362


>gi|170060307|ref|XP_001865743.1| hect E3 ubiquitin ligase [Culex quinquefasciatus]
 gi|167878807|gb|EDS42190.1| hect E3 ubiquitin ligase [Culex quinquefasciatus]
          Length = 1063

 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 66/269 (24%), Positives = 116/269 (43%), Gaps = 46/269 (17%)

Query: 48  GVGGDAYEPTRVP-----GLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALE 102
           G+GG   E    P        ++V   + G  H+L +T +G ++  G N+  QLG     
Sbjct: 15  GLGGIEEEQVMTPREMDWSQAANVQQAACGGSHTLLLTKDGKLYTCGNNDHGQLGHDT-- 72

Query: 103 SRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIV 162
           +      P+ +  L+   V         S A+ + G L+ WG +  GQLG   D+     
Sbjct: 73  NNLPNKRPQFISALENYIVTQVSCGLSHSLALTNWGQLFSWGSNATGQLGHDLDMVSYPA 132

Query: 163 PSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDR 222
           P  ++++A + +V++S G  H LA T  G+LF WG +  G++G LG              
Sbjct: 133 PRMIKSIATKTVVQISCGHSHCLALTNSGELFAWGANEYGQLG-LGT------------- 178

Query: 223 SSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRN 282
              + +++ ++T+ K+                      + G+ +  IACG +HS  + ++
Sbjct: 179 ---TGKKVPTATLVKS----------------------LAGIPIAFIACGGNHSFAVSKS 213

Query: 283 GVLLSCGSNVYGQLGREKQDMGMFPVDIN 311
           G +   G N +GQLG    D   +P  + 
Sbjct: 214 GAIFGWGKNTFGQLGLNDLDSRCYPTQLK 242



 Score = 82.0 bits (201), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 74/271 (27%), Positives = 119/271 (43%), Gaps = 48/271 (17%)

Query: 66  VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAF 125
           VT VS G  HSLA+TN G +++WG N   QLG        ++  P+ ++ +    V    
Sbjct: 91  VTQVSCGLSHSLALTNWGQLFSWGSNATGQLGHDL--DMVSYPAPRMIKSIATKTVVQIS 148

Query: 126 ASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHAL 185
                  A+ + G L+ WG ++ GQLGLG    +    + V++LAG  I  ++ G  H+ 
Sbjct: 149 CGHSHCLALTNSGELFAWGANEYGQLGLGTTGKKVPTATLVKSLAGIPIAFIACGGNHSF 208

Query: 186 AQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEG 245
           A ++ G +FGWG +  G++G        + LDS    +             + + L S G
Sbjct: 209 AVSKSGAIFGWGKNTFGQLG-------LNDLDSRCYPT-------------QLKTLRSLG 248

Query: 246 MEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGM 305
           +   +Y                 I+CG D S+ L + G + +CG   +GQLG       +
Sbjct: 249 V---RY-----------------ISCGDDFSVFLTQEGGVFTCGLGTFGQLGHGTHGNEI 288

Query: 306 FPVDINFHPV-----SISSGLGHSLAICEVR 331
            P  + F  +      I+ G  H+LA    R
Sbjct: 289 LPRMV-FELMGSKITQIACGRKHTLAFVPSR 318



 Score = 74.7 bits (182), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 75/276 (27%), Positives = 110/276 (39%), Gaps = 54/276 (19%)

Query: 84  AVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVW 143
           A++ WG     +LG G +E       P+ ++     NV  A   G  +  +  DG L+  
Sbjct: 2   ALYCWGSTVHGELGLGGIEEEQVMT-PREMDWSQAANVQQAACGGSHTLLLTKDGKLYTC 60

Query: 144 GKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGR 203
           G +  GQLG   +      P  + AL    + +VS G  H+LA T  G+LF WG +A G+
Sbjct: 61  GNNDHGQLGHDTNNLPNKRPQFISALENYIVTQVSCGLSHSLALTNWGQLFSWGSNATGQ 120

Query: 204 IGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEG 263
           +G+            ++D  S     +  S   K                          
Sbjct: 121 LGH------------DLDMVSYPAPRMIKSIATKT------------------------- 143

Query: 264 VEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGR----EKQDMGMFPVDINFHPVS-IS 318
             VV I+CG  H L L  +G L + G+N YGQLG     +K         +   P++ I+
Sbjct: 144 --VVQISCGHSHCLALTNSGELFAWGANEYGQLGLGTTGKKVPTATLVKSLAGIPIAFIA 201

Query: 319 SGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLG 354
            G  HS A+ +        GA  I  WG N   QLG
Sbjct: 202 CGGNHSFAVSK-------SGA--IFGWGKNTFGQLG 228



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 58/195 (29%), Positives = 90/195 (46%), Gaps = 25/195 (12%)

Query: 2   RLLKSVV----------HNHVNVLTSRIFMRSASGTAVVSFGDGSQGALGLPTSLTGVGG 51
           R++KS+           H+H   LT+       SG  + ++G    G LGL T+   V  
Sbjct: 134 RMIKSIATKTVVQISCGHSHCLALTN-------SG-ELFAWGANEYGQLGLGTTGKKVPT 185

Query: 52  DAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPK 111
            A     + G+P  +  ++ G  HS AV+ +GA++ WG+N   QLG   L+SR     P 
Sbjct: 186 -ATLVKSLAGIP--IAFIACGGNHSFAVSKSGAIFGWGKNTFGQLGLNDLDSRCY---PT 239

Query: 112 RVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAG 171
           +++ L  + V         S  +  +G ++  G    GQLG G    E I+P  V  L G
Sbjct: 240 QLKTLRSLGVRYISCGDDFSVFLTQEGGVFTCGLGTFGQLGHGTHGNE-ILPRMVFELMG 298

Query: 172 EKIVKVSFGWGHALA 186
            KI +++ G  H LA
Sbjct: 299 SKITQIACGRKHTLA 313



 Score = 49.3 bits (116), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 39/119 (32%), Positives = 60/119 (50%), Gaps = 21/119 (17%)

Query: 245 GMEKEKYMP---IIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQ 301
           G+E+E+ M    + W     +   V   ACG  H+L+L ++G L +CG+N +GQLG +  
Sbjct: 18  GIEEEQVMTPREMDWS----QAANVQQAACGGSHTLLLTKDGKLYTCGNNDHGQLGHDTN 73

Query: 302 DM-GMFPVDI----NFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGR 355
           ++    P  I    N+    +S GL HSLA+        T   + + SWG N + QLG 
Sbjct: 74  NLPNKRPQFISALENYIVTQVSCGLSHSLAL--------TNWGQ-LFSWGSNATGQLGH 123


>gi|18076889|emb|CAC86115.1| retinitis pigmentosa GTPase regulator [Mus musculus]
          Length = 1001

 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 86/322 (26%), Positives = 154/322 (47%), Gaps = 36/322 (11%)

Query: 27  TAVVS-------FGDGSQGALGLPTSLTGVGGDAYEPTRVPGL-PSDVTSVSAGHYHSLA 78
           TA+V+       FG  + G LGL     G      +PT +  L P  V   + G  H+L 
Sbjct: 47  TAIVTGNNKLYMFGSNNWGQLGL-----GSKAAIIKPTCIKALKPEKVKLAACGRNHTLV 101

Query: 79  VTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDG 138
            T+ G V+A G NNE QLG G  + R T++        D +   +A A+   S+A+ +DG
Sbjct: 102 STDTGGVYAAGGNNEGQLGLGDTDDRDTFHQIVFFTPADTIKQLSAGAN--TSAALTEDG 159

Query: 139 SLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGY 198
            L++WG +  GQ+GL +D +   +P  V    G+ I  +S G+ H+   T DG+L+ +G 
Sbjct: 160 KLFMWGDNSEGQIGL-EDKSNVCIPHEV--TVGKPISWISCGYYHSAFVTMDGELYTFGE 216

Query: 199 SADGRIGNLGKALESSPLDSNIDRSSESDQEISS---STIEKAQKLV-SEGMEKE----- 249
             +G++G   + L +      +    E   +++     T+   +K+V + G+ +      
Sbjct: 217 PENGKLGLPSELLMNHRSPQRVLGIPERVIQVACGGGHTVVLTEKVVYAFGLGQFGQLGL 276

Query: 250 -KYMPIIWEPFLVEGV---EVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGM 305
             ++    EP ++E +   ++  I+CG +H+ ++   G+L + G   +G+LG     +GM
Sbjct: 277 GTFLFETSEPKIIERIKDQKICHISCGENHTALMTELGLLYTFGDGRHGKLG-----LGM 331

Query: 306 FPVDINFHPVSISSGLGHSLAI 327
                 F P   S+ L  ++ +
Sbjct: 332 ENFTNQFFPTLCSNFLRFAVQL 353



 Score = 64.3 bits (155), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 62/231 (26%), Positives = 96/231 (41%), Gaps = 49/231 (21%)

Query: 69  VSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGL--DQVNVCAAFA 126
           +S G  H+  VT N  ++ +G NN  QLG G   S+A    P  ++ L  ++V + A   
Sbjct: 40  LSCGDEHTAIVTGNNKLYMFGSNNWGQLGLG---SKAAIIKPTCIKALKPEKVKLAACGR 96

Query: 127 SGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALA 186
           +  + S   D G ++  G +  GQLGLG           V     + I ++S G   + A
Sbjct: 97  NHTLVST--DTGGVYAAGGNNEGQLGLGDTDDRDTFHQIVFFTPADTIKQLSAGANTSAA 154

Query: 187 QTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGM 246
            TEDGKLF WG +++G+IG   K+    P +  + +                        
Sbjct: 155 LTEDGKLFMWGDNSEGQIGLEDKSNVCIPHEVTVGK------------------------ 190

Query: 247 EKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLG 297
                 PI W            I+CG+ HS  +  +G L + G    G+LG
Sbjct: 191 ------PISW------------ISCGYYHSAFVTMDGELYTFGEPENGKLG 223



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 42/158 (26%), Positives = 73/158 (46%), Gaps = 7/158 (4%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAW 88
           + +FG+   G LGLP+ L     +   P RV G+P  V  V+ G  H++ +T    V+A+
Sbjct: 211 LYTFGEPENGKLGLPSELL---MNHRSPQRVLGIPERVIQVACGGGHTVVLTEK-VVYAF 266

Query: 89  GRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKR 148
           G     QLG G      +  +PK +E +    +C        ++ + + G L+ +G  + 
Sbjct: 267 GLGQFGQLGLGTFLFETS--EPKIIERIKDQKICHISCGENHTALMTELGLLYTFGDGRH 324

Query: 149 GQLGLG-KDITEAIVPSRVEALAGEKIVKVSFGWGHAL 185
           G+LGLG ++ T    P+         +  ++ G  H L
Sbjct: 325 GKLGLGMENFTNQFFPTLCSNFLRFAVQLIACGGCHML 362


>gi|356524449|ref|XP_003530841.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC1-like [Glycine
           max]
          Length = 444

 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 54/166 (32%), Positives = 88/166 (53%), Gaps = 5/166 (3%)

Query: 56  PTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEG 115
           P++V  LP  + +VS G + ++A+T +G +W WG N+  +LGRG  +    W  P+ V  
Sbjct: 252 PSKVKELPYPIAAVSCGGFFTMALTVDGQLWNWGANSNYELGRG--DKIGGWK-PRPVPS 308

Query: 116 LDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIV 175
           L+ V +    + G  S A+ DDG +  W             I    +P+ VEALA E I+
Sbjct: 309 LENVKIIQLASGGYHSLALTDDGKVLSW-GHGGQGQLGHGSIQNQKIPAVVEALAHENII 367

Query: 176 KVSFGWGHALAQTEDGKLFGWGYSADGRIGNLG-KALESSPLDSNI 220
            +S G   + A T++GKL+ WG + D ++G  G   ++S P++ N 
Sbjct: 368 YISCGGSSSAAVTDNGKLYMWGNANDSQLGIPGLPPVQSCPVEVNF 413



 Score = 58.9 bits (141), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 74/299 (24%), Positives = 124/299 (41%), Gaps = 70/299 (23%)

Query: 85  VWAWGRNNEVQLGRGALESR------ATWNDPKRVEGLDQVN-------------VCAAF 125
           V +WG+    QLG G  E+R      A    PK    L Q               +    
Sbjct: 47  VLSWGKGASGQLGGGVEETRLYPSPVANLAVPKSSFALSQTPGRRRLLPSPPKRALEVGL 106

Query: 126 ASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHAL 185
           + G+  S++  DG+LW+WGK   G+LG G +     VP+    L  + ++ V+ G  H++
Sbjct: 107 SCGLFHSSLIVDGALWIWGKGDGGRLGFGHE-NPLFVPTLNPHL--DNLLSVALGGLHSV 163

Query: 186 AQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSS--ESDQEISSS-----TIEKA 238
           A T DG++F WGY   G  G LG ++    L   + + S   + + I++S      I ++
Sbjct: 164 ALTSDGEVFTWGY---GGFGALGHSVYHRELFPRLVKGSWEGTIKHIATSGTHTAAITES 220

Query: 239 QKLVSEGME------------------------KEKYMPIIWEPFLVEGVEVVDIACGFD 274
            +L   G +                        K K +P            +  ++CG  
Sbjct: 221 GELYIWGRDEGDGRLGLGPGRGPDHAGGLSIPSKVKELP----------YPIAAVSCGGF 270

Query: 275 HSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDI----NFHPVSISSGLGHSLAICE 329
            ++ L  +G L + G+N   +LGR  +  G  P  +    N   + ++SG  HSLA+ +
Sbjct: 271 FTMALTVDGQLWNWGANSNYELGRGDKIGGWKPRPVPSLENVKIIQLASGGYHSLALTD 329



 Score = 55.8 bits (133), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 86/328 (26%), Positives = 141/328 (42%), Gaps = 45/328 (13%)

Query: 32  FGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRN 91
           +G G  G LG      G     + PT  P L  ++ SV+ G  HS+A+T++G V+ WG  
Sbjct: 124 WGKGDGGRLGF-----GHENPLFVPTLNPHL-DNLLSVALGGLHSVALTSDGEVFTWGYG 177

Query: 92  NEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSK---- 147
               LG            P+ V+G  +  +     SG  ++AI + G L++WG+ +    
Sbjct: 178 GFGALGHSVYHRELF---PRLVKGSWEGTIKHIATSGTHTAAITESGELYIWGRDEGDGR 234

Query: 148 -RGQLGLGKDITEAI-VPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIG 205
                G G D    + +PS+V+ L    I  VS G    +A T DG+L+ WG +++  +G
Sbjct: 235 LGLGPGRGPDHAGGLSIPSKVKELP-YPIAAVSCGGFFTMALTVDGQLWNWGANSNYELG 293

Query: 206 NLGK--ALESSPLDS--NIDRSSESDQEISSSTIEKAQKLVS-----------EGMEKEK 250
              K    +  P+ S  N+     +     S  +    K++S             ++ +K
Sbjct: 294 RGDKIGGWKPRPVPSLENVKIIQLASGGYHSLALTDDGKVLSWGHGGQGQLGHGSIQNQK 353

Query: 251 YMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGRE-KQDMGMFPVD 309
            +P + E    E   ++ I+CG   S  +  NG L   G+    QLG      +   PV+
Sbjct: 354 -IPAVVEALAHE--NIIYISCGGSSSAAVTDNGKLYMWGNANDSQLGIPGLPPVQSCPVE 410

Query: 310 INF---------HPVSISSGLGHSLAIC 328
           +NF         H V +S  +G S A+C
Sbjct: 411 VNFLMEDDGLGPHKV-LSVAIGASHAMC 437


>gi|147920282|ref|YP_685948.1| regulator of chromosome condensation [Methanocella arvoryzae MRE50]
 gi|110621344|emb|CAJ36622.1| predicted regulator of chromosome condensation [Methanocella
           arvoryzae MRE50]
          Length = 451

 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 65/172 (37%), Positives = 91/172 (52%), Gaps = 24/172 (13%)

Query: 49  VGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWN 108
           VG D   P +VPGL S V  +SAG+  S A+T +G VWAWG N   Q+G G  E R+   
Sbjct: 162 VGHDELTPVQVPGL-SGVKEISAGYMGSKAITGDGTVWAWGINEYGQIGDGTKEIRSL-- 218

Query: 109 DPKRVEGLDQVNVCAAFASGV--VSSAIGDDGSLWVWGKSKRGQLG-LGKDITEAIVPSR 165
            P R+     +N  +A  +G    S A+  DGS+W WG + +GQLG   +D    ++P  
Sbjct: 219 -PVRI----SINNVSAIDTGEYGTSIALKSDGSVWTWGNNGQGQLGDPAEDTLSMMLP-- 271

Query: 166 VEALAGEKIV-----------KVSFGWGHALAQTEDGKLFGWGYSADGRIGN 206
           V  L  E++V            VS G  ++LA  +DG L+ WG + +GR GN
Sbjct: 272 VSNLGSERLVPGKTGGLYNVTSVSAGARNSLAVKDDGTLWVWGENQEGRFGN 323



 Score = 74.3 bits (181), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 54/163 (33%), Positives = 86/163 (52%), Gaps = 18/163 (11%)

Query: 56  PTRVPGLPSDVTSVSAGHY-HSLAVTNNGAVWAWGRNNEVQLGRGALESRATWND----- 109
           P R+    ++V+++  G Y  S+A+ ++G+VW WG N + QLG  A ++ +         
Sbjct: 219 PVRIS--INNVSAIDTGEYGTSIALKSDGSVWTWGNNGQGQLGDPAEDTLSMMLPVSNLG 276

Query: 110 -----PKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDI-TEAIVP 163
                P +  GL   NV +  A    S A+ DDG+LWVWG+++ G+ G G     ++I P
Sbjct: 277 SERLVPGKTGGL--YNVTSVSAGARNSLAVKDDGTLWVWGENQEGRFGNGLKFGRDSIRP 334

Query: 164 SRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGN 206
             V  L    IV V  G  + LA ++DG ++GWG +  G +GN
Sbjct: 335 VIVPGL--NNIVSVKAGASYMLALSDDGTVYGWGKNIFGAVGN 375



 Score = 70.9 bits (172), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 52/164 (31%), Positives = 90/164 (54%), Gaps = 7/164 (4%)

Query: 64  SDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCA 123
           +++T+ SAG +++L + ++G VWA G N   QLG G   +R   +   +V+ L +  V A
Sbjct: 75  TNITAASAGVFNALFLKDDGTVWAIGDNEYGQLGDG---TRVDSSKAVQVQCLSE--VVA 129

Query: 124 AFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGH 183
             A    + A+  DG++W WG +  GQ+G      + + P +V  L+G K  ++S G+  
Sbjct: 130 ISAGDCHNLALKRDGTVWAWGCNLFGQIGNDNVGHDELTPVQVPGLSGVK--EISAGYMG 187

Query: 184 ALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESD 227
           + A T DG ++ WG +  G+IG+  K + S P+  +I+  S  D
Sbjct: 188 SKAITGDGTVWAWGINEYGQIGDGTKEIRSLPVRISINNVSAID 231



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 82/303 (27%), Positives = 137/303 (45%), Gaps = 39/303 (12%)

Query: 31  SFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGR 90
           + GD   G LG  T +     D+ +  +V  L S+V ++SAG  H+LA+  +G VWAWG 
Sbjct: 98  AIGDNEYGQLGDGTRV-----DSSKAVQVQCL-SEVVAISAGDCHNLALKRDGTVWAWGC 151

Query: 91  NNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQ 150
           N   Q+G   +        P +V GL  V   +A   G  S AI  DG++W WG ++ GQ
Sbjct: 152 NLFGQIGNDNVGHDEL--TPVQVPGLSGVKEISAGYMG--SKAITGDGTVWAWGINEYGQ 207

Query: 151 LGLGKDITEAIVPSRVEALAGEKIVKVSFG-WGHALAQTEDGKLFGWGYSADGRIGN--- 206
           +G G     ++ P R+       +  +  G +G ++A   DG ++ WG +  G++G+   
Sbjct: 208 IGDGTKEIRSL-PVRISI---NNVSAIDTGEYGTSIALKSDGSVWTWGNNGQGQLGDPAE 263

Query: 207 --LGKALESSPLDSN----------IDRSSESDQEISSSTIEKAQKLVSEGMEKE----- 249
             L   L  S L S            + +S S    +S  ++    L   G  +E     
Sbjct: 264 DTLSMMLPVSNLGSERLVPGKTGGLYNVTSVSAGARNSLAVKDDGTLWVWGENQEGRFGN 323

Query: 250 --KYMPIIWEPFLVEGV-EVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGR-EKQDMGM 305
             K+      P +V G+  +V +  G  + L L  +G +   G N++G +G  E+ +  +
Sbjct: 324 GLKFGRDSIRPVIVPGLNNIVSVKAGASYMLALSDDGTVYGWGKNIFGAVGNGERSETVV 383

Query: 306 FPV 308
            P+
Sbjct: 384 KPL 386



 Score = 62.8 bits (151), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 80/307 (26%), Positives = 136/307 (44%), Gaps = 73/307 (23%)

Query: 64  SDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCA 123
           S V S+ A    S+A+ +NG V+ WG   +     G   S    ++P  V   D  N+ A
Sbjct: 32  SKVVSIDAQADVSVALNDNGTVFMWGDTRD-----GTFRS----DEPVLV---DITNITA 79

Query: 124 AFASGVVSSAIGDDGSLWVWGKSKRGQLGLGK--DITEAIVPSRVEALAGEKIVKVSFGW 181
           A A    +  + DDG++W  G ++ GQLG G   D ++A+   +V+ L+  ++V +S G 
Sbjct: 80  ASAGVFNALFLKDDGTVWAIGDNEYGQLGDGTRVDSSKAV---QVQCLS--EVVAISAGD 134

Query: 182 GHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKL 241
            H LA   DG ++ WG +  G+IGN                                   
Sbjct: 135 CHNLALKRDGTVWAWGCNLFGQIGN----------------------------------- 159

Query: 242 VSEGMEKEKYMPIIWEPFLVEGVE-VVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREK 300
             + +  ++  P+      V G+  V +I+ G+  S  +  +G + + G N YGQ+G   
Sbjct: 160 --DNVGHDELTPV-----QVPGLSGVKEISAGYMGSKAITGDGTVWAWGINEYGQIGDGT 212

Query: 301 QDMGMFPVDINFHPVS-ISSG-LGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGP 358
           +++   PV I+ + VS I +G  G S+A+    S         + +WG N   QLG    
Sbjct: 213 KEIRSLPVRISINNVSAIDTGEYGTSIALKSDGS---------VWTWGNNGQGQLGDPAE 263

Query: 359 DNVPLVV 365
           D + +++
Sbjct: 264 DTLSMML 270



 Score = 39.3 bits (90), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 36/122 (29%), Positives = 54/122 (44%), Gaps = 20/122 (16%)

Query: 257 EPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINF--HP 314
           EP LV+   +   + G  ++L L  +G + + G N YGQLG   +      V +      
Sbjct: 68  EPVLVDITNITAASAGVFNALFLKDDGTVWAIGDNEYGQLGDGTRVDSSKAVQVQCLSEV 127

Query: 315 VSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPDNV------PLVVEGL 368
           V+IS+G  H+LA+            R    W W   +  G++G DNV      P+ V GL
Sbjct: 128 VAISAGDCHNLAL-----------KRDGTVWAWG-CNLFGQIGNDNVGHDELTPVQVPGL 175

Query: 369 EG 370
            G
Sbjct: 176 SG 177


>gi|408501217|ref|YP_006865136.1| RCC1-like protein [Bifidobacterium asteroides PRL2011]
 gi|408466041|gb|AFU71570.1| RCC1-like protein [Bifidobacterium asteroides PRL2011]
          Length = 1078

 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 94/359 (26%), Positives = 147/359 (40%), Gaps = 88/359 (24%)

Query: 61  GLPSDVT--SVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRV----- 113
           G P++ T   +SAG  HSLA+ ++G V+AWG NN  QLG     + +    P RV     
Sbjct: 614 GAPANFTYVQISAGASHSLAIGSDGYVYAWGNNNHGQLGNNTKSNSSI---PVRVYGASN 670

Query: 114 --EGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAG 171
             EGL  V VCA   +   S A+G DG+++ WG   R     G D T    P  +     
Sbjct: 671 SGEGLKAVQVCAGMWN---SMALGIDGTVFTWGSQAR-----GYDTTSGTTPQTIPTTVK 722

Query: 172 E--------KIVKVSFGWGHALAQTEDGKLFGWGYSADGRIG-NLGKALESSPLDSNIDR 222
           +          V++S  W   LA  +DG ++ WGY+ +G+ G N    + ++ + S   R
Sbjct: 723 DSSDPSGVFHAVQISTSWSFNLAIGQDGYVYVWGYNTNGQFGNNTSDGIHTTTVHSTPSR 782

Query: 223 SSESDQEISSS----------------TIEKAQKLVSEGMEKEKYM-----------PII 255
                    +S                 I++  K+ + G  +   +           P+ 
Sbjct: 783 IPNPAYPQDTSRGWRALQVSAGGWHALVIDEENKIWAWGFNRNGQIGNGSSSDYNANPL- 841

Query: 256 WEPFLVE--------GVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFP 307
             P  V         G++   ++ G  HS+ +  NG + + G N  GQ+G    +  + P
Sbjct: 842 --PKQVRINPNDSSTGLKATQVSAGIYHSMAIDTNGSVWAWGQNDNGQVGDGTTNDRLSP 899

Query: 308 VDIN------------FHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLG 354
           V +                V +++G  HSLAI      +  G AR   +WG N S QLG
Sbjct: 900 VKVFDSAQSTSSAGPWLKAVQLNAGYKHSLAI------DPRGYAR---AWGNNFSGQLG 949



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 63/266 (23%), Positives = 105/266 (39%), Gaps = 61/266 (22%)

Query: 76  SLAVTNNGAVWAWGRNNEVQLGRGA---LESRATWNDPKRV----------EGLDQVNVC 122
           +LA+  +G V+ WG N   Q G      + +    + P R+           G   + V 
Sbjct: 743 NLAIGQDGYVYVWGYNTNGQFGNNTSDGIHTTTVHSTPSRIPNPAYPQDTSRGWRALQVS 802

Query: 123 AAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGK--DITEAIVPSRV-----EALAGEKIV 175
           A     +V   I ++  +W WG ++ GQ+G G   D     +P +V     ++  G K  
Sbjct: 803 AGGWHALV---IDEENKIWAWGFNRNGQIGNGSSSDYNANPLPKQVRINPNDSSTGLKAT 859

Query: 176 KVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTI 235
           +VS G  H++A   +G ++ WG + +G++G+       SP+                   
Sbjct: 860 QVSAGIYHSMAIDTNGSVWAWGQNDNGQVGDGTTNDRLSPV----------------KVF 903

Query: 236 EKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQ 295
           + AQ   S G            P+L    + V +  G+ HSL +   G   + G+N  GQ
Sbjct: 904 DSAQSTSSAG------------PWL----KAVQLNAGYKHSLAIDPRGYARAWGNNFSGQ 947

Query: 296 LGR------EKQDMGMFPVDINFHPV 315
           LG       +  +    PV  N  PV
Sbjct: 948 LGNGISNNDDSANPIPVPVMFNLQPV 973



 Score = 51.6 bits (122), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 36/100 (36%), Positives = 48/100 (48%), Gaps = 17/100 (17%)

Query: 66  VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRV-----------E 114
            T VSAG YHS+A+  NG+VWAWG+N+  Q+G G    R +   P +V            
Sbjct: 858 ATQVSAGIYHSMAIDTNGSVWAWGQNDNGQVGDGTTNDRLS---PVKVFDSAQSTSSAGP 914

Query: 115 GLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLG 154
            L  V + A +   +   AI   G    WG +  GQLG G
Sbjct: 915 WLKAVQLNAGYKHSL---AIDPRGYARAWGNNFSGQLGNG 951


>gi|329927260|ref|ZP_08281541.1| hypothetical protein HMPREF9412_2305 [Paenibacillus sp. HGF5]
 gi|328938563|gb|EGG34947.1| hypothetical protein HMPREF9412_2305 [Paenibacillus sp. HGF5]
          Length = 1058

 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 79/281 (28%), Positives = 130/281 (46%), Gaps = 57/281 (20%)

Query: 64  SDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCA 123
           +++ +V A   +SLA++ +G V+ WG N   +LGR   E    +     + GL  +   +
Sbjct: 79  ANIVAVEASQQYSLALSADGTVYGWGLNASNELGR-PFEGTYYYPTAISIAGLPPIEQIS 137

Query: 124 AFASGVV-SSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGE---KIVKVSF 179
           A   GV  ++A+  DG++W WG ++ G +G G+ +     P +V+  A E    I ++  
Sbjct: 138 A---GVTHAAALAKDGTVWAWGDNQSGAVGNGRQMEYVERPVQVKKNASEFLTGIKQIHA 194

Query: 180 GWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQ 239
           G    +A TE+G+L GWGY+   ++G+L     S P+ + +D++                
Sbjct: 195 GNWFTMAVTENGELLGWGYNGAYQLGDLTLVSHSYPVHA-LDKN---------------- 237

Query: 240 KLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGRE 299
           K    G++K                    ++ G D++L L  +G LLS G N YGQLG +
Sbjct: 238 KNPLNGIKK--------------------VSTGNDYTLALKEDGTLLSWGVNGYGQLGSD 277

Query: 300 KQDMGMF-----PV------DINFHPVSISSGLGHSLAICE 329
               G +     PV      D   H V IS+G+ H  AI E
Sbjct: 278 TL-QGTYSNYPKPVLDKASGDAFGHVVDISAGIAHVAAIRE 317



 Score = 52.0 bits (123), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 67/267 (25%), Positives = 103/267 (38%), Gaps = 61/267 (22%)

Query: 66  VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALES-----RATWNDPKRVEGLDQVN 120
           +  + AG++ ++AVT NG +  WG N   QLG   L S      A   +   + G+ +V+
Sbjct: 189 IKQIHAGNWFTMAVTENGELLGWGYNGAYQLGDLTLVSHSYPVHALDKNKNPLNGIKKVS 248

Query: 121 VCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAI-------VPSRVEALAGEK 173
               +     + A+ +DG+L  WG +  GQ  LG D  +         V  +    A   
Sbjct: 249 TGNDY-----TLALKEDGTLLSWGVNGYGQ--LGSDTLQGTYSNYPKPVLDKASGDAFGH 301

Query: 174 IVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNL--GKALESSPLDSNIDRSSESDQEIS 231
           +V +S G  H  A  EDG ++ WG       GN   G A  +  L    DR  E    ++
Sbjct: 302 VVDISAGIAHVAAIREDGSVWTWG-------GNTIWGSADITGQLGRGDDRLEERPGRVT 354

Query: 232 SSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSN 291
                                       L    +V+    G  H++++  NG L S GSN
Sbjct: 355 R---------------------------LPGNAKVLQAETGGHHTVIMLDNGTLWSMGSN 387

Query: 292 VYGQLGREKQDMGMFPVDINFHPVSIS 318
                 REKQ  G + +     P  +S
Sbjct: 388 ------REKQLGGGYKMGSAIEPTQLS 408



 Score = 38.5 bits (88), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 47/94 (50%), Gaps = 4/94 (4%)

Query: 266 VVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGM---FPVDINFHPVSISSGLG 322
           +V I+    H+L L  NG +LS GSN+ GQLG  KQ +     F   +  +       L 
Sbjct: 20  IVSISSKGYHTLALLDNGTVLSWGSNMVGQLGNGKQGLNFSTSFAQPVYENVNGELKVLA 79

Query: 323 HSLAICEVRSSNVTGGARGIV-SWGWNRSSQLGR 355
           + +A+   +  ++   A G V  WG N S++LGR
Sbjct: 80  NIVAVEASQQYSLALSADGTVYGWGLNASNELGR 113


>gi|281353189|gb|EFB28773.1| hypothetical protein PANDA_018862 [Ailuropoda melanoleuca]
          Length = 318

 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 68/191 (35%), Positives = 93/191 (48%), Gaps = 15/191 (7%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAW 88
           V+S G  S G LG+P            P  +  L   V  ++AG  H+LA T +G V+ W
Sbjct: 102 VLSCGSNSFGQLGVPHGPR----RCMVPQAIELLSEKVVCIAAGLRHALAATASGIVFQW 157

Query: 89  GR---NNEVQLGRG-ALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWG 144
           G    ++  +L  G  L    T  +P RV GL+        A    S+++ D G L+VWG
Sbjct: 158 GTGLASSGRRLCPGQTLPPFLTAKEPSRVTGLENSKATCVLAGSDHSASLTDAGELYVWG 217

Query: 145 KSKRGQLGLGKDITEAIVPSRVEA--LAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADG 202
            +K GQL          +P ++EA     EK+  V  GW H +AQTE GK+F WG  AD 
Sbjct: 218 SNKHGQLASLAAFLP--MPQKIEAHCFQNEKVTSVWSGWTHLVAQTETGKVFTWG-RAD- 273

Query: 203 RIGNLGKALES 213
             G LG+ LES
Sbjct: 274 -YGQLGRKLES 283



 Score = 62.8 bits (151), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 74/291 (25%), Positives = 120/291 (41%), Gaps = 35/291 (12%)

Query: 33  GDGSQGALGLPTSLTGVGGDAYEPTRVPGL--PSDVTSVSAGHYHSLAVTNNGAVWAWGR 90
           G  S G LGL     G   D + P ++     P  +  ++ G  HS  VT++G ++  G 
Sbjct: 1   GANSYGQLGL-----GHKEDVFLPQQLNDFCKPECIRRITGGGGHSAVVTDDGGLFVCGL 55

Query: 91  NNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQ 150
           N + QLG G  E    +   + +       V   +   ++   + + G +   G +  GQ
Sbjct: 56  NKDGQLGLGHTEDVLYFTACRSLLDCPIQQVACGWDFTII---LTESGQVLSCGSNSFGQ 112

Query: 151 LGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGW--GYSADGRIGNLG 208
           LG+       +VP  +E L+ EK+V ++ G  HALA T  G +F W  G ++ GR    G
Sbjct: 113 LGVPHGPRRCMVPQAIELLS-EKVVCIAAGLRHALAATASGIVFQWGTGLASSGRRLCPG 171

Query: 209 KALESSPLDSNIDRSSESDQEISSST-----------IEKAQKLVSEGMEKEKY------ 251
           + L   P  +  + S  +  E S +T           +  A +L   G  K         
Sbjct: 172 QTL--PPFLTAKEPSRVTGLENSKATCVLAGSDHSASLTDAGELYVWGSNKHGQLASLAA 229

Query: 252 ---MPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGRE 299
              MP   E    +  +V  +  G+ H +     G + + G   YGQLGR+
Sbjct: 230 FLPMPQKIEAHCFQNEKVTSVWSGWTHLVAQTETGKVFTWGRADYGQLGRK 280



 Score = 54.3 bits (129), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 60/223 (26%), Positives = 90/223 (40%), Gaps = 61/223 (27%)

Query: 144 GKSKRGQLGLGKDITEAIVPSRVEALAG-EKIVKVSFGWGHALAQTEDGKLFGWGYSADG 202
           G +  GQLGLG    +  +P ++      E I +++ G GH+   T+DG LF  G + DG
Sbjct: 1   GANSYGQLGLGHK-EDVFLPQQLNDFCKPECIRRITGGGGHSAVVTDDGGLFVCGLNKDG 59

Query: 203 R--IGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFL 260
           +  +G+    L  +   S +D                                       
Sbjct: 60  QLGLGHTEDVLYFTACRSLLD--------------------------------------- 80

Query: 261 VEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLG-REKQDMGMFPVDINF---HPVS 316
                +  +ACG+D +++L  +G +LSCGSN +GQLG        M P  I       V 
Sbjct: 81  ---CPIQQVACGWDFTIILTESGQVLSCGSNSFGQLGVPHGPRRCMVPQAIELLSEKVVC 137

Query: 317 ISSGLGHSLAICEVRSSNVTGGARGIV-SWGWNRSSQLGRMGP 358
           I++GL H+LA            A GIV  WG   +S   R+ P
Sbjct: 138 IAAGLRHALA----------ATASGIVFQWGTGLASSGRRLCP 170


>gi|350407907|ref|XP_003488238.1| PREDICTED: RCC1 and BTB domain-containing protein 1-like [Bombus
           impatiens]
          Length = 539

 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 56/153 (36%), Positives = 83/153 (54%), Gaps = 5/153 (3%)

Query: 56  PTRVPGLPSD--VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRV 113
           PT VP +  D  V  ++ G +HSLA+TN G ++AWG N   Q+G G + S      PK +
Sbjct: 123 PTLVPSVLDDKFVVDIACGGHHSLALTNKGEIYAWGHNVSGQVGCGTILSTVQ-PIPKLL 181

Query: 114 E-GLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGE 172
             GL+   V         S A+ D G ++ WG +  GQLGLG + T  + P +V   A  
Sbjct: 182 NVGLNGKKVVHISCGDSSSVAVTDSGEVYSWGHNGVGQLGLG-NCTSQVEPQKVATFAKI 240

Query: 173 KIVKVSFGWGHALAQTEDGKLFGWGYSADGRIG 205
            I KV  G+ H LA +++G L+ WG ++ G++G
Sbjct: 241 VIEKVVCGYMHTLALSDEGVLYVWGANSYGQLG 273



 Score = 77.0 bits (188), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 78/299 (26%), Positives = 126/299 (42%), Gaps = 64/299 (21%)

Query: 13  NVLTSRIFMRSASGTAVVS-------FGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSD 65
           NV  + ++ ++A+ T +V+        G+ + G LG     TG       P ++  L   
Sbjct: 25  NVRMAIVYGKAANETLLVTKDDMVYGIGNNTYGCLG-----TGDTQSTIYPKKIEALCGK 79

Query: 66  VTSVSAGHY----HSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEG-LDQVN 120
             SV    Y    H LA+T  G V++WG N+  +LG  +     T   P  V   LD   
Sbjct: 80  --SVKTFAYGKGPHVLALTEEGKVYSWGYNDYCELGNKSTNEGLT---PTLVPSVLDDKF 134

Query: 121 VCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDI-TEAIVPSRVEA-LAGEKIVKVS 178
           V      G  S A+ + G ++ WG +  GQ+G G  + T   +P  +   L G+K+V +S
Sbjct: 135 VVDIACGGHHSLALTNKGEIYAWGHNVSGQVGCGTILSTVQPIPKLLNVGLNGKKVVHIS 194

Query: 179 FGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKA 238
            G   ++A T+ G+++ WG++  G++G LG                    ++    +   
Sbjct: 195 CGDSSSVAVTDSGEVYSWGHNGVGQLG-LGNC----------------TSQVEPQKVATF 237

Query: 239 QKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLG 297
            K+V E                        + CG+ H+L L   GVL   G+N YGQLG
Sbjct: 238 AKIVIE-----------------------KVVCGYMHTLALSDEGVLYVWGANSYGQLG 273



 Score = 70.5 bits (171), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 42/134 (31%), Positives = 73/134 (54%), Gaps = 6/134 (4%)

Query: 66  VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAF 125
           V  +S G   S+AVT++G V++WG N   QLG G   S+    +P++V    ++ +    
Sbjct: 190 VVHISCGDSSSVAVTDSGEVYSWGHNGVGQLGLGNCTSQV---EPQKVATFAKIVIEKVV 246

Query: 126 ASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGH-- 183
              + + A+ D+G L+VWG +  GQLGL  D +   +P+++E     +I+ +     H  
Sbjct: 247 CGYMHTLALSDEGVLYVWGANSYGQLGLNTD-SNVWIPTKLEVPEMGRILDIVTSHYHHI 305

Query: 184 ALAQTEDGKLFGWG 197
           +LA +E  ++F WG
Sbjct: 306 SLAMSEGNRIFMWG 319



 Score = 65.9 bits (159), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 64/225 (28%), Positives = 95/225 (42%), Gaps = 49/225 (21%)

Query: 134 IGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWG-HALAQTEDGK 192
           +  D  ++  G +  G LG G D    I P ++EAL G+ +   ++G G H LA TE+GK
Sbjct: 42  VTKDDMVYGIGNNTYGCLGTG-DTQSTIYPKKIEALCGKSVKTFAYGKGPHVLALTEEGK 100

Query: 193 LFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYM 252
           ++ WGY+    +GN                                 K  +EG+      
Sbjct: 101 VYSWGYNDYCELGN---------------------------------KSTNEGL-----T 122

Query: 253 PIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINF 312
           P +  P +++   VVDIACG  HSL L   G + + G NV GQ+G       + P+    
Sbjct: 123 PTL-VPSVLDDKFVVDIACGGHHSLALTNKGEIYAWGHNVSGQVGCGTILSTVQPI---- 177

Query: 313 HPVSISSGLGHSLAI---CEVRSSNVTGGARGIVSWGWNRSSQLG 354
            P  ++ GL     +   C   SS     +  + SWG N   QLG
Sbjct: 178 -PKLLNVGLNGKKVVHISCGDSSSVAVTDSGEVYSWGHNGVGQLG 221


>gi|209878252|ref|XP_002140567.1| regulator of chromosome condensation family protein
           [Cryptosporidium muris RN66]
 gi|209556173|gb|EEA06218.1| regulator of chromosome condensation family protein
           [Cryptosporidium muris RN66]
          Length = 477

 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 78/285 (27%), Positives = 117/285 (41%), Gaps = 58/285 (20%)

Query: 27  TAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPS--DVTSVSAGHYHSLAVTNNGA 84
           + VV++G    G LG     + +     EP  +  L S   +  V  G +HS  +T++G 
Sbjct: 8   SGVVAWGSSEYGQLGAIYEESNI-----EPKLIESLYSFNRIKEVCCGGHHSAVITHSGE 62

Query: 85  VWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWG 144
           +  WG     QLG G L+       P+ +  +   NV     S   S+AI +DG L+ WG
Sbjct: 63  LIVWGYGGCGQLGLGDLKDIVI---PRVMTSIK--NVINVSCSDRHSAAILEDGRLYTWG 117

Query: 145 KSKRGQLGLGKDITEA-----IVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYS 199
            +K G+LG+G             P  VE L  EK++KVS G  H    T+  K + WG  
Sbjct: 118 CNKSGKLGIGSLNVNLNNNIICTPQLVEKLLNEKVIKVSCGSFHTACLTDLNKAYTWGLG 177

Query: 200 ADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPF 259
             GR+G+                                      G   + Y P + E  
Sbjct: 178 MQGRLGH--------------------------------------GDTNDVYTPKLIESL 199

Query: 260 LVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGR-EKQDM 303
              G+ V +I CG  H+ +L  NG +  CG   +G+LG   K+D+
Sbjct: 200 --AGLSVKNIVCGGHHTAILLNNGKVYFCGGGAFGKLGFGSKEDI 242



 Score = 68.6 bits (166), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 64/277 (23%), Positives = 116/277 (41%), Gaps = 53/277 (19%)

Query: 62  LPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNV 121
           L   V  VS G +H+  +T+    + WG   + +LG G      T   PK +E L  ++V
Sbjct: 148 LNEKVIKVSCGSFHTACLTDLNKAYTWGLGMQGRLGHGDTNDVYT---PKLIESLAGLSV 204

Query: 122 CAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVE-ALAGEKIVKVSFG 180
                 G  ++ + ++G ++  G    G+LG G    +  +P  ++ +L  + I +VS G
Sbjct: 205 KNIVCGGHHTAILLNNGKVYFCGGGAFGKLGFGSK-EDIYIPKLLQGSLTNKSIKEVSLG 263

Query: 181 WGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQK 240
           + H+   T  GK++ WG    GR+G++    E                            
Sbjct: 264 YQHSAVITTKGKVYTWG--QGGRLGHIYNGPE---------------------------- 293

Query: 241 LVSEGMEKEKYMPIIWEPFLVEGVE---VVDIACGFDHSLVLGRNGVLLSCGSNV---YG 294
                       P I  P LVE +     V+I+CG  H++V+   G + + G      +G
Sbjct: 294 ------------PDILSPKLVEKLNSIIAVNISCGHSHTVVISNIGDVYAWGVTRNLGHG 341

Query: 295 QLGREKQDMGMFPVDINFHPVSISSGLGHSLAICEVR 331
            +  +  D  + P+  N + V +S G  H++A+ ++ 
Sbjct: 342 VIDSKPNDPTLHPILQNKNIVQVSCGKTHTIALSDIE 378



 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 50/166 (30%), Positives = 75/166 (45%), Gaps = 17/166 (10%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSD--VTSVSAGHYHSLAVTNNGAVW 86
           V   G G+ G LG      G   D Y P  + G  ++  +  VS G+ HS  +T  G V+
Sbjct: 223 VYFCGGGAFGKLGF-----GSKEDIYIPKLLQGSLTNKSIKEVSLGYQHSAVITTKGKVY 277

Query: 87  AWGRNNEVQLGRGALESRATWNDPKRVEGLDQ---VNVCAAFASGVVSSAIGDDGSLWVW 143
            WG+    +LG            PK VE L+    VN+    +  VV S IGD   ++ W
Sbjct: 278 TWGQGG--RLGHIYNGPEPDILSPKLVEKLNSIIAVNISCGHSHTVVISNIGD---VYAW 332

Query: 144 GKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTE 189
           G ++   LG G   ++   P+    L  + IV+VS G  H +A ++
Sbjct: 333 GVTR--NLGHGVIDSKPNDPTLHPILQNKNIVQVSCGKTHTIALSD 376


>gi|407002778|gb|EKE19448.1| hypothetical protein ACD_9C00014G0001, partial [uncultured
           bacterium]
          Length = 691

 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 58/168 (34%), Positives = 92/168 (54%), Gaps = 10/168 (5%)

Query: 56  PTRVPGLPSDVTSVSAGHYHSLAVT-NNGAVWAWGRNNEVQLGRGALESRATWNDPKRV- 113
           PT++  L S+V ++  G YHSLAV  +NG V+AWG N   QLG  +  + +    P RV 
Sbjct: 322 PTKISTL-SNVKAIGTGQYHSLAVVGDNGDVYAWGYNINNQLGNNSSTNSSV---PVRVG 377

Query: 114 -EGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGE 172
            EG       A       S A+ ++G++W WG +  GQLGLG   T+ +VP+++      
Sbjct: 378 VEGAWLSGAAAVTGMNYSSLALMNNGTVWSWGSNNVGQLGLGSVGTQ-VVPAQISNFTNV 436

Query: 173 KIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNI 220
           K ++   G  H +A T DG ++ WGY+  G++G+     +++P D N+
Sbjct: 437 KAIRS--GTSHVIALTNDGDVYTWGYNNVGQLGDNTTVNKNTPQDINL 482



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 80/297 (26%), Positives = 127/297 (42%), Gaps = 59/297 (19%)

Query: 62  LPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNV 121
           L  +V+ V+     + A+T +G V+AWG    + LG G +  +     P  +  L  V  
Sbjct: 226 LGKEVSQVTTSGISAFALTKDGKVYAWGSGGRLGLGVGEIAEKYV---PVEIPNLTDVVS 282

Query: 122 CAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGW 181
            AA + G V  A+  +G ++ WG +  GQLG+G  +T+ I P+++  L+  K +    G 
Sbjct: 283 IAAGSGGHVL-ALKSNGDVYAWGLNGYGQLGVGDTVTKEI-PTKISTLSNVKAIGT--GQ 338

Query: 182 GHALAQTED-GKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQK 240
            H+LA   D G ++ WGY+ + ++GN      S P+   ++ +                 
Sbjct: 339 YHSLAVVGDNGDVYAWGYNINNQLGNNSSTNSSVPVRVGVEGA----------------- 381

Query: 241 LVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDH-SLVLGRNGVLLSCGSNVYGQLGRE 299
                          W    + G   V    G ++ SL L  NG + S GSN  GQLG  
Sbjct: 382 ---------------W----LSGAAAV---TGMNYSSLALMNNGTVWSWGSNNVGQLGLG 419

Query: 300 KQDMGMFPVDI-NFHPV-SISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLG 354
                + P  I NF  V +I SG  H +A+              + +WG+N   QLG
Sbjct: 420 SVGTQVVPAQISNFTNVKAIRSGTSHVIALTN---------DGDVYTWGYNNVGQLG 467



 Score = 71.2 bits (173), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 81/298 (27%), Positives = 126/298 (42%), Gaps = 43/298 (14%)

Query: 64  SDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCA 123
           S   +V+  +Y SLA+ NNG VW+WG NN  QLG G++ ++     P ++     V    
Sbjct: 384 SGAAAVTGMNYSSLALMNNGTVWSWGSNNVGQLGLGSVGTQVV---PAQISNFTNVKAIR 440

Query: 124 AFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGH 183
           +  S V+  A+ +DG ++ WG +  GQLG    + +   P  +  L G  I+ ++ G   
Sbjct: 441 SGTSHVI--ALTNDGDVYTWGYNNVGQLGDNTTVNKN-TPQDIN-LGG--IIGIAAGNSS 494

Query: 184 ALAQTEDGKLFGWGYSADGRIG--------NLGKALESSPLDSNIDRSSESDQEISSSTI 235
             A   DGK + WGY+  G +G        N     ES+ +D  ID +  +     ++  
Sbjct: 495 LYAMGADGKFWVWGYNYYGELGIGTQGTGTNKIVPFESNLMDRIIDVACNTSGSGGAAVA 554

Query: 236 EKAQKLV------SEGMEKEKY-MPIIWEPFLV-------------EGVEVVDIACGFDH 275
            K+   V      S  M    Y   ++  P  V             E  + +      D 
Sbjct: 555 LKSDGSVWTWGYGSSIMGTNSYSSAVVTSPVQVKLWSHPADYFGSTEPQKTITKLAPSDS 614

Query: 276 SLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDI-----NFHPVSISSGLGHSLAIC 328
            ++  RNG L S GSN  GQLG    ++G F   +     N   +S S    HSL + 
Sbjct: 615 HMLAVRNGELYSWGSNAQGQLG-TGDNIGRFTPMVANGLNNITDISSSPRAFHSLVLS 671



 Score = 46.2 bits (108), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 60/205 (29%), Positives = 87/205 (42%), Gaps = 56/205 (27%)

Query: 171 GEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEI 230
           G+++ +V+     A A T+DGK++ WG  + GR+G                         
Sbjct: 227 GKEVSQVTTSGISAFALTKDGKVYAWG--SGGRLG------------------------- 259

Query: 231 SSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFD-HSLVLGRNGVLLSCG 289
                      +  G   EKY+P+   P L +   VV IA G   H L L  NG + + G
Sbjct: 260 -----------LGVGEIAEKYVPVE-IPNLTD---VVSIAAGSGGHVLALKSNGDVYAWG 304

Query: 290 SNVYGQLGREKQDMGMFPVDINF--HPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGW 347
            N YGQLG         P  I+   +  +I +G  HSLA        V G    + +WG+
Sbjct: 305 LNGYGQLGVGDTVTKEIPTKISTLSNVKAIGTGQYHSLA--------VVGDNGDVYAWGY 356

Query: 348 NRSSQLGRMGPDN--VPLVVEGLEG 370
           N ++QLG     N  VP+ V G+EG
Sbjct: 357 NINNQLGNNSSTNSSVPVRV-GVEG 380


>gi|395543395|ref|XP_003773604.1| PREDICTED: secretion-regulating guanine nucleotide exchange factor
           [Sarcophilus harrisii]
          Length = 612

 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 90/316 (28%), Positives = 137/316 (43%), Gaps = 56/316 (17%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAW 88
           V+S G  S G LGLP            P  +  L   V  ++AG  H+LA T +G V+ W
Sbjct: 296 VLSCGSNSFGQLGLPPGTK----RQVIPQVIELLNEKVVCIAAGMRHALAATESGLVFQW 351

Query: 89  GRNNEVQLGRGALESRA-----TWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVW 143
           G       GR     +      T  +P +V GL+   V    A    S+++ D+G L+VW
Sbjct: 352 G-TGLASTGRRTCPEKTLPPFLTAKEPCQVTGLENSKVKTVVAGSCHSASLTDEGELYVW 410

Query: 144 GKSKRGQLGLGKDITEAI---VPSRVEA--LAGEKIVKVSFGWGHALAQTEDGKLFGWGY 198
           G +K GQL     ++ A     P ++EA     EK+  V  GW H +A+TE GK+F WG 
Sbjct: 411 GSNKHGQL-----LSPAAFLPTPQKIEAHCFQNEKVTMVWSGWTHLVARTETGKVFTWGR 465

Query: 199 SADGRIGNLGKALESSPLDSNID--RSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIW 256
           +  G++G            + +D       D E+  S       + S        +P + 
Sbjct: 466 ADYGQLG------------TKVDGQERCTGDHELLLSCTRTLATMPSS-------LPCL- 505

Query: 257 EPFLVEGVEVVDIACGFDHSL-VLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFHPV 315
                EG  V ++ACG +H+L V+G +    S G N +G  G   +     P  +    +
Sbjct: 506 -----EG--VTEMACGSEHNLAVVGSS--CYSWGWNEHGMCGDGTEVNVWVPKPVESPSL 556

Query: 316 SIS----SGLGHSLAI 327
           ++      G GHSLA+
Sbjct: 557 ALCLLVGCGAGHSLAV 572



 Score = 67.8 bits (164), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 77/278 (27%), Positives = 112/278 (40%), Gaps = 56/278 (20%)

Query: 27  TAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGL--PSDVTSVSAGHYHSLAVTNNGA 84
           T ++S+G  S G LGL     G   D  EP R+     P  +  ++ G  HS  VT+ G 
Sbjct: 189 TLLLSWGANSYGQLGL-----GHKEDVLEPQRLNDFCDPKRLKLLTGGGGHSAVVTDEGE 243

Query: 85  VWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWG 144
           ++  G N + QLG G  E   ++     + G   + V   +   ++   + ++G +   G
Sbjct: 244 LFVCGLNKDGQLGLGHTEDVLSFIPCTPLAGCPVLQVSCGWDFTIL---LTENGQVLSCG 300

Query: 145 KSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRI 204
            +  GQLGL       ++P  +E L  EK+V ++ G  HALA TE G +F WG       
Sbjct: 301 SNSFGQLGLPPGTKRQVIPQVIE-LLNEKVVCIAAGMRHALAATESGLVFQWGTG----- 354

Query: 205 GNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIW---EPFLV 261
                      L S   R+                         EK +P      EP  V
Sbjct: 355 -----------LASTGRRTC-----------------------PEKTLPPFLTAKEPCQV 380

Query: 262 EGVE---VVDIACGFDHSLVLGRNGVLLSCGSNVYGQL 296
            G+E   V  +  G  HS  L   G L   GSN +GQL
Sbjct: 381 TGLENSKVKTVVAGSCHSASLTDEGELYVWGSNKHGQL 418



 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 53/195 (27%), Positives = 91/195 (46%), Gaps = 46/195 (23%)

Query: 140 LWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKV-SFGWGHALAQTEDGKLFGWGY 198
           L  WG +  GQLGLG    + + P R+      K +K+ + G GH+   T++G+LF  G 
Sbjct: 191 LLSWGANSYGQLGLGHK-EDVLEPQRLNDFCDPKRLKLLTGGGGHSAVVTDEGELFVCGL 249

Query: 199 SADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEP 258
           + DG++G                             +   + ++S       ++P     
Sbjct: 250 NKDGQLG-----------------------------LGHTEDVLS-------FIPCT--- 270

Query: 259 FLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQL----GREKQDMGMFPVDINFHP 314
             + G  V+ ++CG+D +++L  NG +LSCGSN +GQL    G ++Q +      +N   
Sbjct: 271 -PLAGCPVLQVSCGWDFTILLTENGQVLSCGSNSFGQLGLPPGTKRQVIPQVIELLNEKV 329

Query: 315 VSISSGLGHSLAICE 329
           V I++G+ H+LA  E
Sbjct: 330 VCIAAGMRHALAATE 344



 Score = 55.1 bits (131), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 56/200 (28%), Positives = 85/200 (42%), Gaps = 31/200 (15%)

Query: 26  GTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLP-SDVTSVSAGHYHSLAVTNNGA 84
           GT + S G  +     LP  LT     A EP +V GL  S V +V AG  HS ++T+ G 
Sbjct: 352 GTGLASTGRRTCPEKTLPPFLT-----AKEPCQVTGLENSKVKTVVAGSCHSASLTDEGE 406

Query: 85  VWAWGRNNEVQLGRGALESRATWNDPKRVEG--LDQVNVCAAFASGVVSSAIGDDGSLWV 142
           ++ WG N   QL    L   A    P+++E        V   ++      A  + G ++ 
Sbjct: 407 LYVWGSNKHGQL----LSPAAFLPTPQKIEAHCFQNEKVTMVWSGWTHLVARTETGKVFT 462

Query: 143 WGKSKRGQLGLGKDITE----------------AIVPSRVEALAGEKIVKVSFGWGHALA 186
           WG++  GQLG   D  E                A +PS +  L G  + +++ G  H LA
Sbjct: 463 WGRADYGQLGTKVDGQERCTGDHELLLSCTRTLATMPSSLPCLEG--VTEMACGSEHNLA 520

Query: 187 QTEDGKLFGWGYSADGRIGN 206
                  + WG++  G  G+
Sbjct: 521 VV-GSSCYSWGWNEHGMCGD 539


>gi|427780149|gb|JAA55526.1| Putative hect e3 ubiquitin ligase culex quinquefasciatus hect e3
           ubiquitin ligase [Rhipicephalus pulchellus]
          Length = 1175

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 81/288 (28%), Positives = 127/288 (44%), Gaps = 46/288 (15%)

Query: 23  SASGTAVVSFGDGSQGALGLPTSLTGVGGDA--YEPTRVPGLPSD-VTSVSAGHYHSLAV 79
           S +   + S+G G  G LGL     GV  +    +P RV    +  V  V+ GH H+L +
Sbjct: 41  SGAPMLLYSWGLGPNGELGLTQGKDGVDTETPVSQPERVRRFGTRAVREVACGHKHTLVL 100

Query: 80  TNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGS 139
             NG+V++ G N+  QLG+       +    ++V  L    + A       S A+ D G 
Sbjct: 101 LANGSVYSCGANDFGQLGQDR-----SMRKLEQVAALSAHEIRAVACGEAHSLALSDAGQ 155

Query: 140 LWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYS 199
           ++ WG ++ GQLG G +    + P  ++ LA   IV+++ G  H LA   +G+LF WG +
Sbjct: 156 VFSWGCNRNGQLGCGTEEESRLRPKVIKKLATLHIVQIACGAVHCLALANNGELFSWGGN 215

Query: 200 ADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPF 259
           A G++G LG+                      S+  E+  + VS                
Sbjct: 216 ASGQLG-LGR---------------------DSTGNERLPRRVSH--------------- 238

Query: 260 LVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFP 307
            + GV +  +ACG  HS+ L  +G +   G N  GQLG   Q   + P
Sbjct: 239 -LVGVPLALVACGAMHSVGLTPSGTVFVWGRNSCGQLGLSDQRDRLHP 285



 Score = 75.5 bits (184), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 48/150 (32%), Positives = 78/150 (52%), Gaps = 2/150 (1%)

Query: 66  VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAF 125
           +  ++ G  H LA+ NNG +++WG N   QLG G  +S      P+RV  L  V +    
Sbjct: 190 IVQIACGAVHCLALANNGELFSWGGNASGQLGLGR-DSTGNERLPRRVSHLVGVPLALVA 248

Query: 126 ASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHAL 185
              + S  +   G+++VWG++  GQLGL  D  + + P+ ++ L  ++I  V  G  H  
Sbjct: 249 CGAMHSVGLTPSGTVFVWGRNSCGQLGLS-DQRDRLHPTVLKPLRSQRIKHVCCGENHTA 307

Query: 186 AQTEDGKLFGWGYSADGRIGNLGKALESSP 215
           A T DG +F +G    G++G+  K  E+ P
Sbjct: 308 ALTADGGVFTFGAGTYGQLGHGVKVNEAVP 337



 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 71/229 (31%), Positives = 108/229 (47%), Gaps = 26/229 (11%)

Query: 24  ASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNG 83
           A+   + S+G  + G LGL    TG        + + G+P  +  V+ G  HS+ +T +G
Sbjct: 204 ANNGELFSWGGNASGQLGLGRDSTGNERLPRRVSHLVGVP--LALVACGAMHSVGLTPSG 261

Query: 84  AVWAWGRNNEVQLGRGALESR--ATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLW 141
            V+ WGRN+  QLG      R   T   P R + +   +VC        ++A+  DG ++
Sbjct: 262 TVFVWGRNSCGQLGLSDQRDRLHPTVLKPLRSQRIK--HVCCGENH---TAALTADGGVF 316

Query: 142 VWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQT-EDGKLFGWGYSA 200
            +G    GQLG G  + EA VP RV  L G  I ++S G  H +A   + G+L+ +G   
Sbjct: 317 TFGAGTYGQLGHGVKVNEA-VPRRVVELMGTAISQLSCGRCHTVAYAPQSGRLYIFGLGM 375

Query: 201 DGRIGNLGKALESSPL-------------DSNIDRSSESDQEISSSTIE 236
            G++GN    LESS L              S ++RS     +IS + IE
Sbjct: 376 SGQLGN--GTLESSALPVTVPGLWHGVTHPSQVNRSPSPRPQISQNAIE 422



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 68/273 (24%), Positives = 109/273 (39%), Gaps = 51/273 (18%)

Query: 86  WAWGRNNEVQL--GRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVW 143
           W  G N E+ L  G+  +++    + P+RV       V         +  +  +GS++  
Sbjct: 50  WGLGPNGELGLTQGKDGVDTETPVSQPERVRRFGTRAVREVACGHKHTLVLLANGSVYSC 109

Query: 144 GKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGR 203
           G +  GQLG  + + +     +V AL+  +I  V+ G  H+LA ++ G++F WG + +G+
Sbjct: 110 GANDFGQLGQDRSMRKL---EQVAALSAHEIRAVACGEAHSLALSDAGQVFSWGCNRNGQ 166

Query: 204 IGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEG 263
           +G                  +E +  +    I+K   L                      
Sbjct: 167 LGC----------------GTEEESRLRPKVIKKLATL---------------------- 188

Query: 264 VEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFHPVSISSGLGH 323
             +V IACG  H L L  NG L S G N  GQLG  +   G   +     P  +S  +G 
Sbjct: 189 -HIVQIACGAVHCLALANNGELFSWGGNASGQLGLGRDSTGNERL-----PRRVSHLVGV 242

Query: 324 SLAI--CEVRSSNVTGGARGIVSWGWNRSSQLG 354
            LA+  C    S     +  +  WG N   QLG
Sbjct: 243 PLALVACGAMHSVGLTPSGTVFVWGRNSCGQLG 275


>gi|390338528|ref|XP_782246.3| PREDICTED: RCC1 and BTB domain-containing protein 1
           [Strongylocentrotus purpuratus]
          Length = 536

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 52/158 (32%), Positives = 91/158 (57%), Gaps = 7/158 (4%)

Query: 56  PTRVPGL--PSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRV 113
           P R+ G      ++ ++ G +HSL +T+ G V+AWG NN  Q+G GA  + +T   P++V
Sbjct: 122 PHRITGNLGSCKISQIACGSHHSLVLTDRGEVFAWGYNNCGQVGSGATANIST---PRKV 178

Query: 114 EGLDQVNVCAAFASGVVSS-AIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGE 172
             +       + A G  SS A+ D G ++ WG +  GQLGLG ++ +   P +V +L G 
Sbjct: 179 VSVLGGKRVVSIACGQTSSLAVVDSGEVYGWGYNGNGQLGLGNNVNQP-SPCKVSSLNGL 237

Query: 173 KIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKA 210
            I + + G+ H++A +++G ++ WG ++ G++G   KA
Sbjct: 238 IISQAACGYAHSMALSDEGNIYTWGANSYGQLGTGNKA 275



 Score = 83.6 bits (205), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 69/272 (25%), Positives = 120/272 (44%), Gaps = 51/272 (18%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSD-VTSVSAGH-YHSLAVTNNGAVW 86
           V +FG+     LGL   ++ +      P ++ GL    + +++ G   H +A T NG ++
Sbjct: 47  VFAFGNNHNACLGLGDVMSSL-----TPRKIEGLCKKGMFALAFGSGPHVVAATENGEIY 101

Query: 87  AWGRNNEVQLGRGALESRATWNDPKRVEG-LDQVNVCAAFASGVVSSAIGDDGSLWVWGK 145
           +WG N   QLG G          P R+ G L    +         S  + D G ++ WG 
Sbjct: 102 SWGHNGYCQLGNGTTNQGLL---PHRITGNLGSCKISQIACGSHHSLVLTDRGEVFAWGY 158

Query: 146 SKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIG 205
           +  GQ+G G     +     V  L G+++V ++ G   +LA  + G+++GWGY+ +G++G
Sbjct: 159 NNCGQVGSGATANISTPRKVVSVLGGKRVVSIACGQTSSLAVVDSGEVYGWGYNGNGQLG 218

Query: 206 NLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVE 265
                     L +N+++ S    ++SS                            + G+ 
Sbjct: 219 ----------LGNNVNQPSPC--KVSS----------------------------LNGLI 238

Query: 266 VVDIACGFDHSLVLGRNGVLLSCGSNVYGQLG 297
           +   ACG+ HS+ L   G + + G+N YGQLG
Sbjct: 239 ISQAACGYAHSMALSDEGNIYTWGANSYGQLG 270



 Score = 78.6 bits (192), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 85/287 (29%), Positives = 128/287 (44%), Gaps = 51/287 (17%)

Query: 70  SAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCA-AFASG 128
           SAG+  ++ VT +  V+A+G N+   LG G + S  T   P+++EGL +  + A AF SG
Sbjct: 33  SAGN-EAIYVTKDDEVFAFGNNHNACLGLGDVMSSLT---PRKIEGLCKKGMFALAFGSG 88

Query: 129 VVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEA-LAGEKIVKVSFGWGHALAQ 187
               A  ++G ++ WG +   QLG G    + ++P R+   L   KI +++ G  H+L  
Sbjct: 89  PHVVAATENGEIYSWGHNGYCQLGNGT-TNQGLLPHRITGNLGSCKISQIACGSHHSLVL 147

Query: 188 TEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGME 247
           T+ G++F WGY+  G++G+   A  S+P                       +K+VS    
Sbjct: 148 TDRGEVFAWGYNNCGQVGSGATANISTP-----------------------RKVVS---- 180

Query: 248 KEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFP 307
                       ++ G  VV IACG   SL +  +G +   G N  GQLG         P
Sbjct: 181 ------------VLGGKRVVSIACGQTSSLAVVDSGEVYGWGYNGNGQLGLGNNVNQPSP 228

Query: 308 VDINFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLG 354
                  VS  +GL  S A C    S        I +WG N   QLG
Sbjct: 229 C-----KVSSLNGLIISQAACGYAHSMALSDEGNIYTWGANSYGQLG 270



 Score = 55.5 bits (132), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 62/247 (25%), Positives = 100/247 (40%), Gaps = 55/247 (22%)

Query: 122 CAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGW 181
           C   ++G  +  +  D  ++ +G +    LGLG D+  ++ P ++E L  + +  ++FG 
Sbjct: 29  CVFGSAGNEAIYVTKDDEVFAFGNNHNACLGLG-DVMSSLTPRKIEGLCKKGMFALAFGS 87

Query: 182 G-HALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQK 240
           G H +A TE+G+++ WG++   ++GN                                  
Sbjct: 88  GPHVVAATENGEIYSWGHNGYCQLGN---------------------------------- 113

Query: 241 LVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREK 300
               G   +  +P      L    ++  IACG  HSLVL   G + + G N  GQ+G   
Sbjct: 114 ----GTTNQGLLPHRITGNL-GSCKISQIACGSHHSLVLTDRGEVFAWGYNNCGQVGSGA 168

Query: 301 QDMGMFPVDI-----NFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGR 355
                 P  +         VSI+ G   SLA+  V S  V G       WG+N + QLG 
Sbjct: 169 TANISTPRKVVSVLGGKRVVSIACGQTSSLAV--VDSGEVYG-------WGYNGNGQLGL 219

Query: 356 MGPDNVP 362
               N P
Sbjct: 220 GNNVNQP 226


>gi|428184753|gb|EKX53607.1| hypothetical protein GUITHDRAFT_160884 [Guillardia theta CCMP2712]
          Length = 308

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 68/210 (32%), Positives = 101/210 (48%), Gaps = 16/210 (7%)

Query: 21  MRSASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVT 80
           M++ +G   VS G  + GALGL   +      A +PT +P +P  V  VS G   ++ VT
Sbjct: 98  MQNKAGKLFVS-GWSNSGALGLGKDVV----KAKQPTEIP-IPEPVIDVSCGKKFTVFVT 151

Query: 81  NNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSL 140
            +G V++ G N   +LG     S +   +P  V GLD + +    A      A+ D G +
Sbjct: 152 ESGKVYSMGDNKNGELGNPNAGSSSY--EPTIVHGLDGIKIVKIAAGQYHVLALSDIGEV 209

Query: 141 WVWGKSKRGQLGLG------KDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLF 194
           + WG    G  G G       D     VP R+E L GEKI  +S G  H++A ++DG +F
Sbjct: 210 YSWGWGGSGTPGAGVGALGHGDKASLPVPKRIERLNGEKITNISCGAKHSVALSQDGTMF 269

Query: 195 GWGYSADGRI--GNLGKALESSPLDSNIDR 222
            WG+   GR+  GN    L+  P+  +  R
Sbjct: 270 TWGHGEQGRLGHGNNTDFLQPEPISESPVR 299



 Score = 52.4 bits (124), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 50/207 (24%), Positives = 87/207 (42%), Gaps = 26/207 (12%)

Query: 131 SSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTED 190
           SS     G L+V G S  G LGLGKD+ +A  P+ +     E ++ VS G    +  TE 
Sbjct: 96  SSMQNKAGKLFVSGWSNSGALGLGKDVVKAKQPTEIPIP--EPVIDVSCGKKFTVFVTES 153

Query: 191 GKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSE------ 244
           GK++  G + +G +GN      SS  +  I    +  + +  +  +     +S+      
Sbjct: 154 GKVYSMGDNKNGELGNPNAG--SSSYEPTIVHGLDGIKIVKIAAGQYHVLALSDIGEVYS 211

Query: 245 ----------------GMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSC 288
                           G   +  +P+      + G ++ +I+CG  HS+ L ++G + + 
Sbjct: 212 WGWGGSGTPGAGVGALGHGDKASLPVPKRIERLNGEKITNISCGAKHSVALSQDGTMFTW 271

Query: 289 GSNVYGQLGREKQDMGMFPVDINFHPV 315
           G    G+LG       + P  I+  PV
Sbjct: 272 GHGEQGRLGHGNNTDFLQPEPISESPV 298


>gi|363734309|ref|XP_421009.3| PREDICTED: secretion-regulating guanine nucleotide exchange factor
           [Gallus gallus]
          Length = 394

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 88/313 (28%), Positives = 139/313 (44%), Gaps = 46/313 (14%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVP-GLPSDVTSVSAGHYHSLAVTNNGAVWA 87
           V+S G  + G LG+P     + G    P ++   L      ++AG  H+LA T +G V+ 
Sbjct: 105 VLSCGSNAFGQLGVPQ----ISGPCLIPQKIKQSLKEKAVGIAAGLRHALAATESGLVFQ 160

Query: 88  WG-----RNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWV 142
           WG     R   V  G+  L       +P  ++GL+ V V    A      ++  +G L+V
Sbjct: 161 WGTGMASRAKRVHQGK-TLPVFWAAKEPCEIKGLEDVKVKRVAAGSYHCVSLTGEGHLYV 219

Query: 143 WGKSKRGQLGLGKDITEAIVPSRVEA--LAGEKIVKVSFGWGHALAQTEDGKLFGWGYSA 200
           WG +K GQL + K++   + P +++    + EKI  V  GW H +AQTE GK+F WG + 
Sbjct: 220 WGSNKHGQL-VSKEVF-LVEPKKIDTQFFSHEKIGAVWSGWTHLVAQTETGKVFTWGRAD 277

Query: 201 DGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFL 260
            G++G                 +   D + + +  E+  KL          +PI   P L
Sbjct: 278 YGQLGR---------------HAVVPDGQETCTASEQPVKLFCN-------IPISL-PCL 314

Query: 261 VEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDIN----FHPVS 316
               +   IACG +H+L +  +   LS G N +G  G   +     P  +        + 
Sbjct: 315 NGASQ---IACGSEHNLAVVGD-CCLSWGWNEHGMCGDGTEANVHVPKPVKALGYAKQIL 370

Query: 317 ISSGLGHSLAICE 329
           I  G GHSLA+C+
Sbjct: 371 IGCGAGHSLALCQ 383



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 78/309 (25%), Positives = 118/309 (38%), Gaps = 66/309 (21%)

Query: 65  DVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAA 124
           D+ S++ G  HS  +T  G ++  G N   QLG    E    +     + G     V   
Sbjct: 33  DIKSIAGGGGHSAVITGAGELFVCGHNKAGQLGLNHTEDVLCFTLCTALSGFCVQEVACG 92

Query: 125 FASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHA 184
           +   ++   +G  G +   G +  GQLG+ +     ++P +++    EK V ++ G  HA
Sbjct: 93  WDFTII---LGRAGLVLSCGSNAFGQLGVPQISGPCLIPQKIKQSLKEKAVGIAAGLRHA 149

Query: 185 LAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSE 244
           LA TE G +F WG     R                                    K V +
Sbjct: 150 LAATESGLVFQWGTGMASR-----------------------------------AKRVHQ 174

Query: 245 GMEKEKYMPIIW---EPFLVEGVE---VVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGR 298
           G    K +P+ W   EP  ++G+E   V  +A G  H + L   G L   GSN +GQL  
Sbjct: 175 G----KTLPVFWAAKEPCEIKGLEDVKVKRVAAGSYHCVSLTGEGHLYVWGSNKHGQL-V 229

Query: 299 EKQDMGMFPVDINFHPVS------ISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQ 352
            K+   + P  I+    S      + SG  H +A  E            + +WG     Q
Sbjct: 230 SKEVFLVEPKKIDTQFFSHEKIGAVWSGWTHLVAQTETGK---------VFTWGRADYGQ 280

Query: 353 LGRMG--PD 359
           LGR    PD
Sbjct: 281 LGRHAVVPD 289



 Score = 42.4 bits (98), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 39/141 (27%), Positives = 63/141 (44%), Gaps = 15/141 (10%)

Query: 65  DVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGAL-----ESRATWNDPKRVEGLDQV 119
            + +V +G  H +A T  G V+ WGR +  QLGR A+     E+      P ++     +
Sbjct: 250 KIGAVWSGWTHLVAQTETGKVFTWGRADYGQLGRHAVVPDGQETCTASEQPVKL--FCNI 307

Query: 120 NVCAAFASGVVSSAIGDDGSLWV-------WGKSKRGQLGLGKDITEAIVPSRVEALAGE 172
            +     +G    A G + +L V       WG ++ G  G G +     VP  V+AL   
Sbjct: 308 PISLPCLNGASQIACGSEHNLAVVGDCCLSWGWNEHGMCGDGTE-ANVHVPKPVKALGYA 366

Query: 173 KIVKVSFGWGHALAQTEDGKL 193
           K + +  G GH+LA  ++  L
Sbjct: 367 KQILIGCGAGHSLALCQNSTL 387


>gi|322785446|gb|EFZ12117.1| hypothetical protein SINV_05294 [Solenopsis invicta]
          Length = 585

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 64/212 (30%), Positives = 107/212 (50%), Gaps = 20/212 (9%)

Query: 11  HVNVLTS----RIFMRSASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGL-PSD 65
           HV  LT     R+++R      V S+G      LG      G       PT+V  L    
Sbjct: 134 HVLALTKEGEVRLYLRK-----VYSWGHNGYCELG-----NGTCNQGLYPTQVNSLGIKR 183

Query: 66  VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAF 125
           +  ++ G +HS+A+  +G ++AWG+NN  Q G     ++     P++V         A  
Sbjct: 184 IVDIACGSHHSVALNEDGEIYAWGQNNCGQAGSSITTNQGV---PRQVNSNLAGKKVAQI 240

Query: 126 ASGVVSS-AIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHA 184
           A G  S+ A+ ++G ++ WG +  GQLG+G  + + + P R+  L G  IVKV+ G+ H 
Sbjct: 241 ACGQTSTVALLENGEVYGWGYNGVGQLGIGNYVNQ-MTPCRIGTLLGTVIVKVACGYVHT 299

Query: 185 LAQTEDGKLFGWGYSADGRIGNLGKALESSPL 216
           LA T++G+L+ WG ++ G++G   K    +P+
Sbjct: 300 LALTDEGQLYVWGGNSYGQLGISNKTNACNPV 331



 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 74/290 (25%), Positives = 113/290 (38%), Gaps = 59/290 (20%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGL-PSDVTSVSAGH-YHSLAVTNNG--- 83
           V + G    G LG     TG       P +V  L   D+   + G   H LA+T  G   
Sbjct: 91  VYALGSNIAGCLG-----TGDAHSTLYPKKVDALCEKDIKMFAYGSGPHVLALTKEGEVR 145

Query: 84  ----AVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGS 139
                V++WG N   +LG G          P +V  L    +         S A+ +DG 
Sbjct: 146 LYLRKVYSWGHNGYCELGNGTCNQGLY---PTQVNSLGIKRIVDIACGSHHSVALNEDGE 202

Query: 140 LWVWGKSKRGQLGLGKDITEAIVPSRVEA-LAGEKIVKVSFGWGHALAQTEDGKLFGWGY 198
           ++ WG++  GQ G     T   VP +V + LAG+K+ +++ G    +A  E+G+++GWGY
Sbjct: 203 IYAWGQNNCGQAG-SSITTNQGVPRQVNSNLAGKKVAQIACGQTSTVALLENGEVYGWGY 261

Query: 199 SADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEP 258
           +  G++G      + +P                                           
Sbjct: 262 NGVGQLGIGNYVNQMTPCRIGT-------------------------------------- 283

Query: 259 FLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPV 308
             + G  +V +ACG+ H+L L   G L   G N YGQLG   +     PV
Sbjct: 284 --LLGTVIVKVACGYVHTLALTDEGQLYVWGGNSYGQLGISNKTNACNPV 331



 Score = 45.4 bits (106), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 31/97 (31%), Positives = 53/97 (54%), Gaps = 6/97 (6%)

Query: 56  PTRVPGLPSDV-TSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVE 114
           P R+  L   V   V+ G+ H+LA+T+ G ++ WG N+  QLG   + ++    +P  V+
Sbjct: 278 PCRIGTLLGTVIVKVACGYVHTLALTDEGQLYVWGGNSYGQLG---ISNKTNACNPVLVK 334

Query: 115 G-LDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQ 150
             + +V+  AA      S A+G+ G +++WG   RGQ
Sbjct: 335 HEMGRVSDIAALHYNHTSVAVGEGGRVYMWGHC-RGQ 370



 Score = 43.9 bits (102), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 56/231 (24%), Positives = 91/231 (39%), Gaps = 63/231 (27%)

Query: 137 DGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWG-HALAQTEDG---- 191
           D  ++  G +  G LG G D    + P +V+AL  + I   ++G G H LA T++G    
Sbjct: 88  DKMVYALGSNIAGCLGTG-DAHSTLYPKKVDALCEKDIKMFAYGSGPHVLALTKEGEVRL 146

Query: 192 ---KLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEK 248
              K++ WG++    +GN                    +Q +  + +       S G+++
Sbjct: 147 YLRKVYSWGHNGYCELGN-----------------GTCNQGLYPTQVN------SLGIKR 183

Query: 249 EKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPV 308
                            +VDIACG  HS+ L  +G + + G N  GQ G         P 
Sbjct: 184 -----------------IVDIACGSHHSVALNEDGEIYAWGQNNCGQAGSSITTNQGVPR 226

Query: 309 DINFH-----PVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLG 354
            +N +        I+ G   ++A+ E       G   G   WG+N   QLG
Sbjct: 227 QVNSNLAGKKVAQIACGQTSTVALLE------NGEVYG---WGYNGVGQLG 268


>gi|323359531|ref|YP_004225927.1| alpha-tubulin suppressor [Microbacterium testaceum StLB037]
 gi|323275902|dbj|BAJ76047.1| alpha-tubulin suppressor [Microbacterium testaceum StLB037]
          Length = 969

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 85/308 (27%), Positives = 130/308 (42%), Gaps = 44/308 (14%)

Query: 24  ASGTAVVS--------FGDGSQGALGLPTSLTGVGGDAYEPTRVP-GLPSDVTSVSAGHY 74
           ASG+AVV+         G    G  G+P S +        PT++    PS + SV  G  
Sbjct: 129 ASGSAVVTQLGANAYAVGGNDHGKAGVPGSAS-----PTSPTQLALVFPSPIVSVVTGSA 183

Query: 75  HSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAI 134
            SLA+  +G VW+ G N   QLG G    RATW    R++GL  V   A  AS  +S A+
Sbjct: 184 FSLALLKDGTVWSVGSNAVGQLGDGTTTDRATW---ARIDGLSDVTQIA--ASDSLSMAV 238

Query: 135 GDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGE--KIVKVSFGWGHALAQTEDGK 192
             DG++  WG +  GQLG G     +  P  V  +     K V+++ G+  + A  EDG 
Sbjct: 239 LADGTIRAWGDNSDGQLGNGSTAPNSPTPVTVAGIGSSEPKAVQIALGFASSYALLEDGS 298

Query: 193 LFGWGYSADGRIGNLGKALESSP------LDSNIDRSSESDQEISSSTIEKAQKLVS--- 243
           +  WG + +G++GN      ++P          + R ++      S+        +S   
Sbjct: 299 IRSWGNNDEGQLGNATTTPRNTPGALVWGPRGQLTRVTQISAGAYSAYARMTDGTISAWG 358

Query: 244 --------EGMEKEKYMPIIWEPFLVEGVEV-VDIACGFDHSLVLGRNGVLLSCGSNVYG 294
                   +G      +P       V G+     +  G+  +  +  +G + S G N  G
Sbjct: 359 NNNRGRLGDGTTTNSSLPTT-----VSGITTATQVVAGYVSAYAVLTDGTVKSWGGNEQG 413

Query: 295 QLGREKQD 302
           QLG   QD
Sbjct: 414 QLGNGTQD 421



 Score = 64.7 bits (156), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 87/321 (27%), Positives = 129/321 (40%), Gaps = 42/321 (13%)

Query: 55  EPTRVP-GLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRV 113
            PT++    PS +  + AG  +++A+  +G VW  G N+  QLG G   SR++W    RV
Sbjct: 629 SPTQLSRAFPSPLVKIGAGVGYTIALLKDGTVWGVGNNDSGQLGDGTTTSRSSW---ARV 685

Query: 114 EGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEK 173
             L +V V  A AS  V  A+   GS+  WG+S   + G     T   V S +    G  
Sbjct: 686 PDLTEV-VDIAVASNTV-LAVTTGGSVLQWGQSLSQRRGSANTTTPQAV-SEITTAIGVA 742

Query: 174 IVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSP-----LDSNIDRSSE--- 225
           +   S     A A   DG +  WG    G +G+   A  + P     +++ I  ++    
Sbjct: 743 LAPDSGEGSAAYALLSDGHVVSWGA---GALGDGTTAYRTEPGPVTGINTAIQIAASTGT 799

Query: 226 -----SDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDI-------ACGF 273
                SD  I S  +  A   +  G E + Y     E F+   V V DI       A G+
Sbjct: 800 AFALLSDGTIKSWGMNSAGGNLGNGTEDDPYS----ESFVDSPVTVSDITTATRVVAAGY 855

Query: 274 DHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFHPVSISSGLGHSLAICEVRSS 333
               +L  NG + + G N YGQLG         PV +     +   G   + A   +   
Sbjct: 856 STYALL-SNGQIRAWGGNNYGQLGDGTTTTRNTPVAVKNISTATQIGTTDNSAYALLADG 914

Query: 334 NVTGGARGIVSWGWNRSSQLG 354
                    ++WG N   QLG
Sbjct: 915 TA-------LAWGGNDQGQLG 928



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 47/136 (34%), Positives = 67/136 (49%), Gaps = 13/136 (9%)

Query: 66  VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQ-VNVCAA 124
           VT +SAG Y + A   +G + AWG NN  +LG G   + +    P  V G+     V A 
Sbjct: 335 VTQISAGAYSAYARMTDGTISAWGNNNRGRLGDGTTTNSSL---PTTVSGITTATQVVAG 391

Query: 125 FASGVVSSAIGDDGSLWVWGKSKRGQLGLG-KDITEAI-VPSRVEALAG-EKIVKVSFGW 181
           + S     A+  DG++  WG +++GQLG G +D   A   P  V+ L    +I    FG 
Sbjct: 392 YVSAY---AVLTDGTVKSWGGNEQGQLGNGTQDYATAYSTPQSVQTLTNVTQITAAVFG- 447

Query: 182 GHALAQTEDGKLFGWG 197
             A A T DG ++ WG
Sbjct: 448 --AYAITSDGTVYAWG 461



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 84/360 (23%), Positives = 135/360 (37%), Gaps = 86/360 (23%)

Query: 41  GLPTSLTGVGGDAYEPTR--------------------VPGLPSDVTSVSAGHYHSLAVT 80
           G P S TG  G ++ PT                     +PG    VT++S G   S  VT
Sbjct: 77  GQPVSFTGPDGVSFSPTTASTDGSGVATSTMTTSDAWALPGSSITVTALSGGASGSAVVT 136

Query: 81  NNGA-VWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGS 139
             GA  +A G N+    G+  +   A+   P ++  +    + +       S A+  DG+
Sbjct: 137 QLGANAYAVGGNDH---GKAGVPGSASPTSPTQLALVFPSPIVSVVTGSAFSLALLKDGT 193

Query: 140 LWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYS 199
           +W  G +  GQLG G   T+    +R++ L    + +++     ++A   DG +  WG +
Sbjct: 194 VWSVGSNAVGQLGDGT-TTDRATWARIDGL--SDVTQIAASDSLSMAVLADGTIRAWGDN 250

Query: 200 ADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPF 259
           +DG++GN G    +SP                                          P 
Sbjct: 251 SDGQLGN-GSTAPNSP-----------------------------------------TPV 268

Query: 260 LVEGV-----EVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFHP 314
            V G+     + V IA GF  S  L  +G + S G+N  GQLG         P  + + P
Sbjct: 269 TVAGIGSSEPKAVQIALGFASSYALLEDGSIRSWGNNDEGQLGNATTTPRNTPGALVWGP 328

Query: 315 VSISSGLGHSLAICEVRSSNVTGGAR----GIVSWGWNRSSQLGRMGPDN--VPLVVEGL 368
                  G    + ++ +   +  AR     I +WG N   +LG     N  +P  V G+
Sbjct: 329 ------RGQLTRVTQISAGAYSAYARMTDGTISAWGNNNRGRLGDGTTTNSSLPTTVSGI 382



 Score = 51.6 bits (122), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 39/126 (30%), Positives = 63/126 (50%), Gaps = 9/126 (7%)

Query: 20  FMRSASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAV 79
           + R   GT + ++G+ ++G LG      G   ++  PT V G+ +  T V AG+  + AV
Sbjct: 346 YARMTDGT-ISAWGNNNRGRLG-----DGTTTNSSLPTTVSGI-TTATQVVAGYVSAYAV 398

Query: 80  TNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGS 139
             +G V +WG N + QLG G  +    ++ P+ V+ L  V    A   G    AI  DG+
Sbjct: 399 LTDGTVKSWGGNEQGQLGNGTQDYATAYSTPQSVQTLTNVTQITAAVFGAY--AITSDGT 456

Query: 140 LWVWGK 145
           ++ WG 
Sbjct: 457 VYAWGN 462



 Score = 47.8 bits (112), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 45/153 (29%), Positives = 73/153 (47%), Gaps = 14/153 (9%)

Query: 12  VNVLTSRIFMRSASGTAVVSFGDGSQGALGLPTSLTGVGG----DAYEPTRV--PGLPSD 65
           V  + + I + +++GTA     DG+  + G+ ++   +G     D Y  + V  P   SD
Sbjct: 784 VTGINTAIQIAASTGTAFALLSDGTIKSWGMNSAGGNLGNGTEDDPYSESFVDSPVTVSD 843

Query: 66  VTS---VSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVC 122
           +T+   V A  Y + A+ +NG + AWG NN  QLG G   +R T    K +    Q+   
Sbjct: 844 ITTATRVVAAGYSTYALLSNGQIRAWGGNNYGQLGDGTTTTRNTPVAVKNISTATQIGTT 903

Query: 123 AAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGK 155
              A  +++     DG+   WG + +GQLG G 
Sbjct: 904 DNSAYALLA-----DGTALAWGGNDQGQLGDGT 931


>gi|301117542|ref|XP_002906499.1| conserved hypothetical protein [Phytophthora infestans T30-4]
 gi|262107848|gb|EEY65900.1| conserved hypothetical protein [Phytophthora infestans T30-4]
          Length = 1711

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 85/306 (27%), Positives = 128/306 (41%), Gaps = 54/306 (17%)

Query: 65  DVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAA 124
           D+  V++G+     +TN+G V   G N   Q G+G  + R     P +     +V   AA
Sbjct: 355 DIRQVASGNETLAVLTNDGVVLTCGLNKSGQCGQGHFDERVMMLRPVQALRSQRVKFIAA 414

Query: 125 FASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHA 184
                   A+ D G  + WG + RGQLG     T+  VP  +E+L  +K+   S  + H+
Sbjct: 415 SNGCEHMIALTDSGLAYSWGYNDRGQLGHENLTTKVHVPKLIESLKDKKLRYASVSYHHS 474

Query: 185 LAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSE 244
              T+ G+L+ +G +  G++G          LD    +S+                    
Sbjct: 475 AVITDSGELYAFGMNDCGQLG----------LDHTQHQST-------------------- 504

Query: 245 GMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQ--LGREKQD 302
                   P + + F  EG E+  +ACG  H+++    G L +CG N YGQ  LG  +Q 
Sbjct: 505 --------PQLVKGF--EGTEISMVACGLYHTIICTATGGLFACGKNDYGQLGLGHNRQI 554

Query: 303 MGMFPVDINFHPVS-ISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQL--GRMGPD 359
                V +    VS ++SG  HS+         VT   R   S+G N   QL  G     
Sbjct: 555 KVASLVSLPNEMVSYVASGYYHSVV--------VTNSGRTF-SFGRNDYGQLGIGNKVHQ 605

Query: 360 NVPLVV 365
           NVP VV
Sbjct: 606 NVPNVV 611



 Score = 65.1 bits (157), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 63/225 (28%), Positives = 109/225 (48%), Gaps = 27/225 (12%)

Query: 6   SVVHNHVNVLTSRIFMRSASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLP-S 64
           SV ++H  V+T        SG  + +FG    G LGL  +          P  V G   +
Sbjct: 468 SVSYHHSAVITD-------SG-ELYAFGMNDCGQLGLDHT-----QHQSTPQLVKGFEGT 514

Query: 65  DVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQV--NVC 122
           +++ V+ G YH++  T  G ++A G+N+  QLG G        N   +V  L  +   + 
Sbjct: 515 EISMVACGLYHTIICTATGGLFACGKNDYGQLGLGH-------NRQIKVASLVSLPNEMV 567

Query: 123 AAFASGVVSSAI-GDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGW 181
           +  ASG   S +  + G  + +G++  GQLG+G  + +  VP+ V   A  ++V+ + G 
Sbjct: 568 SYVASGYYHSVVVTNSGRTFSFGRNDYGQLGIGNKVHQN-VPNVVALSANTRMVRATCGC 626

Query: 182 GHALAQTEDGKLFGWGYSADGRIGNLGK--ALESSPLDSNIDRSS 224
            H +  +E G++F +G +  G++GN G   AL   PL    +++S
Sbjct: 627 YHTVLLSEQGQVFVFGRNNKGQLGNRGSADALLPVPLKVRPEKNS 671


>gi|255085030|ref|XP_002504946.1| predicted protein [Micromonas sp. RCC299]
 gi|226520215|gb|ACO66204.1| predicted protein [Micromonas sp. RCC299]
          Length = 526

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 85/264 (32%), Positives = 119/264 (45%), Gaps = 44/264 (16%)

Query: 28  AVVSFGDGSQGALGLPTSLTGV----GGDAYEPTR--VPGLPSD---VTSVSAGHYHSLA 78
           AV ++GDG +G LG     +      G D  EP    V  L  D   V S +AG  HS+ 
Sbjct: 291 AVYTWGDGKEGVLGHGADESWRWGFWGRDTTEPAPRLVRSLADDGIEVASAAAGLCHSVC 350

Query: 79  VTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDG 138
           V   G V AWG+    QLG GA  + A   +P RV  L +V   A  A G  + A+G DG
Sbjct: 351 VDRTGHVHAWGQGRFNQLGVGAKNAPAFTTEPTRVPALGRVRDLA--AGGNFNVAVGADG 408

Query: 139 SLWVWGKSKRGQLGLGK-DITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWG 197
           S+  WG +  G+LGLG  +     VP  V           S GW HA A + DG+L+ WG
Sbjct: 409 SMISWGANGNGELGLGNSNDKRGDVPRLVHNPNAASFASASAGWRHAAATSSDGRLWTWG 468

Query: 198 YSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWE 257
           +S  G +G  G   +S+     + R+ +SD                            WE
Sbjct: 469 WS--GSVGQHGVDADSTGGQLGL-RNGQSD---------------------------FWE 498

Query: 258 PFLVEGV--EVVDIACGFDHSLVL 279
           P LV G+  +   ++CGF+H++ +
Sbjct: 499 PTLVVGLPGKAKAVSCGFNHTVAV 522



 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 98/342 (28%), Positives = 144/342 (42%), Gaps = 48/342 (14%)

Query: 27  TAVVSFGDGSQGALGLP---TSLTGVGGDAYEPTRVPGLPS--DVTSVSAGHYHSLAVTN 81
           T VVS G+G  G LG         G+G  A    R+ G+P   DV S SAG  H+  VT 
Sbjct: 115 TRVVSCGNGDFGRLGHGGDGRGRAGLGMSAETFQRMTGIPQGLDVVSASAGGSHTAVVTA 174

Query: 82  NGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSS-AIGDDGSL 140
           +GAV+  G N   QLG            P  V GL Q +   A ++G   +  + + G L
Sbjct: 175 DGAVYTCGLNEHGQLGHSHDAGYVPILRP--VSGLPQHDRVVAVSAGHHHTVCVTEGGEL 232

Query: 141 WVWGKSKRGQLGLGKDITEAI-VPSRVEALA------GEKIVKVSFGWGHALAQTEDGKL 193
           W WG++   Q GLG      + +P+ + + +         ++ V+ G  H LA T+ G +
Sbjct: 233 WAWGRNDASQCGLGSGAPSVVPLPAWISSASPGAPGNHGAVMSVAAGPRHNLAVTDRGAV 292

Query: 194 FGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMP 253
           + WG   DG+ G LG   + S       R           T E A +LV           
Sbjct: 293 YTWG---DGKEGVLGHGADESWRWGFWGR----------DTTEPAPRLVRS--------- 330

Query: 254 IIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFH 313
                   +G+EV   A G  HS+ + R G + + G   + QLG   ++   F  +    
Sbjct: 331 -----LADDGIEVASAAAGLCHSVCVDRTGHVHAWGQGRFNQLGVGAKNAPAFTTEPTRV 385

Query: 314 PVSISSGLGHSLAICEVRSSNVTGGARG-IVSWGWNRSSQLG 354
           P      LG    +    + NV  GA G ++SWG N + +LG
Sbjct: 386 PA-----LGRVRDLAAGGNFNVAVGADGSMISWGANGNGELG 422



 Score = 48.1 bits (113), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 41/129 (31%), Positives = 60/129 (46%), Gaps = 24/129 (18%)

Query: 245 GMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMG 304
           GM  E +  +   P   +G++VV  + G  H+ V+  +G + +CG N +GQLG    D G
Sbjct: 141 GMSAETFQRMTGIP---QGLDVVSASAGGSHTAVVTADGAVYTCGLNEHGQLG-HSHDAG 196

Query: 305 MFPVDINFHPVS--------ISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQ--LG 354
             P+     PVS        ++   GH   +C      VT G   + +WG N +SQ  LG
Sbjct: 197 YVPI---LRPVSGLPQHDRVVAVSAGHHHTVC------VTEGGE-LWAWGRNDASQCGLG 246

Query: 355 RMGPDNVPL 363
              P  VPL
Sbjct: 247 SGAPSVVPL 255


>gi|449676845|ref|XP_002166895.2| PREDICTED: uncharacterized protein LOC100213911, partial [Hydra
           magnipapillata]
          Length = 725

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 83/322 (25%), Positives = 155/322 (48%), Gaps = 40/322 (12%)

Query: 32  FGDGSQGALGLPTSLTGVGGDAYEPTRV-PGLPSDVTSVSAGHYHSLAVTNNGAVWAWGR 90
           FG    G LGL     G      +P+ V P  P  V  V+ G  H++  + +G ++++G 
Sbjct: 62  FGSNDWGQLGL-----GHTKSLNKPSFVKPLKPEKVRKVACGRNHTIVYSESGKLFSFGC 116

Query: 91  NNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAI-GDDGSLWVWGKSKRG 149
           N + QLG    E+      PK +E + Q+ +    A G   S I  +DG ++VWG +  G
Sbjct: 117 NEDGQLGHVDKENELL---PKEIESIPQMEI-KQIACGTYHSIILSEDGDVYVWGNNNEG 172

Query: 150 QLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGK 209
           QLGLG+++ E  +P +++    +++V VS G+ H    T DG L+ +G +  G++G    
Sbjct: 173 QLGLGEEV-ENSLPKKLK--FKKEVVSVSCGYYHTALVTRDGFLYTFGENELGKLGLSSS 229

Query: 210 ALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKY---------------MPI 254
            L ++ +  ++   +++D+ IS S    A+  V+   +   Y               +  
Sbjct: 230 QLSNTTVPQSVAMPADNDEYISVSC--GARHTVAITKQGHCYAWGDGSQGQLGHGTKLLE 287

Query: 255 IWEPFLVE---GVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDM--GMFPVD 309
           + EP  ++   G + + ++CG  H+ V+  +G + + G   +G+LG+ +        PV 
Sbjct: 288 VNEPKQIKKLSGQKCISVSCGESHTAVVTESGKVFTFGDGRHGKLGQGEDSFSNSFDPVY 347

Query: 310 IN----FHPVSISSGLGHSLAI 327
           ++    F+ V +S G  H+L +
Sbjct: 348 LSRFNYFNVVYVSCGGCHTLVL 369



 Score = 80.5 bits (197), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 61/191 (31%), Positives = 95/191 (49%), Gaps = 21/191 (10%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYE---PTRVPGLPSDVTSVSAGHYHSLAVTNNGAV 85
           V  +G+ ++G LGL        G+  E   P ++     +V SVS G+YH+  VT +G +
Sbjct: 163 VYVWGNNNEGQLGL--------GEEVENSLPKKLK-FKKEVVSVSCGYYHTALVTRDGFL 213

Query: 86  WAWGRNNEVQLGRGALESRATWND--PKRVEGLDQVNVCAAFASGVVSS-AIGDDGSLWV 142
           + +G N   +LG+  L S    N   P+ V      +   + + G   + AI   G  + 
Sbjct: 214 YTFGEN---ELGKLGLSSSQLSNTTVPQSVAMPADNDEYISVSCGARHTVAITKQGHCYA 270

Query: 143 WGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADG 202
           WG   +GQLG G  + E   P +++ L+G+K + VS G  H    TE GK+F +G   DG
Sbjct: 271 WGDGSQGQLGHGTKLLEVNEPKQIKKLSGQKCISVSCGESHTAVVTESGKVFTFG---DG 327

Query: 203 RIGNLGKALES 213
           R G LG+  +S
Sbjct: 328 RHGKLGQGEDS 338



 Score = 77.8 bits (190), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 72/235 (30%), Positives = 114/235 (48%), Gaps = 46/235 (19%)

Query: 128 GVVSSAIGDD--------GSLWVWGKSKRGQLGLGKDITEAI-VPSRVEALAGEKIVKVS 178
           GVV  A GD+        G L+V+G +  GQLGLG   T+++  PS V+ L  EK+ KV+
Sbjct: 39  GVVEMACGDEHSAVVTESGRLYVFGSNDWGQLGLGH--TKSLNKPSFVKPLKPEKVRKVA 96

Query: 179 FGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESD-QEISSSTIEK 237
            G  H +  +E GKLF +G + DG++G++ K  E  P +  I+   + + ++I+  T   
Sbjct: 97  CGRNHTIVYSESGKLFSFGCNEDGQLGHVDKENELLPKE--IESIPQMEIKQIACGTYHS 154

Query: 238 AQKLVSE-----------------GMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLG 280
              ++SE                 G E E  +P      L    EVV ++CG+ H+ ++ 
Sbjct: 155 I--ILSEDGDVYVWGNNNEGQLGLGEEVENSLP----KKLKFKKEVVSVSCGYYHTALVT 208

Query: 281 RNGVLLSCGSNVYGQLGREKQDMG--------MFPVDINFHPVSISSGLGHSLAI 327
           R+G L + G N  G+LG     +           P D N   +S+S G  H++AI
Sbjct: 209 RDGFLYTFGENELGKLGLSSSQLSNTTVPQSVAMPAD-NDEYISVSCGARHTVAI 262



 Score = 41.2 bits (95), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 35/127 (27%), Positives = 59/127 (46%), Gaps = 15/127 (11%)

Query: 248 KEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLG---REKQDMG 304
           K K+   I   F ++   VV++ACG +HS V+  +G L   GSN +GQLG    +  +  
Sbjct: 22  KSKFADNIANKFWIKNDGVVEMACGDEHSAVVTESGRLYVFGSNDWGQLGLGHTKSLNKP 81

Query: 305 MFPVDINFHPV-SISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPDN--V 361
            F   +    V  ++ G  H++   E         +  + S+G N   QLG +  +N  +
Sbjct: 82  SFVKPLKPEKVRKVACGRNHTIVYSE---------SGKLFSFGCNEDGQLGHVDKENELL 132

Query: 362 PLVVEGL 368
           P  +E +
Sbjct: 133 PKEIESI 139


>gi|302753472|ref|XP_002960160.1| hypothetical protein SELMODRAFT_73640 [Selaginella moellendorffii]
 gi|300171099|gb|EFJ37699.1| hypothetical protein SELMODRAFT_73640 [Selaginella moellendorffii]
          Length = 435

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 83/305 (27%), Positives = 140/305 (45%), Gaps = 47/305 (15%)

Query: 11  HVNVLTSRIFMRSASGTA---------VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPG 61
           +VN    R+ M SA G           V ++G G+ GALG           +YE   +P 
Sbjct: 129 YVNPRIKRVQMASAGGLHNIALTEVGNVYTWGYGAFGALGH---------GSYERELLPR 179

Query: 62  L-----PSDVTSVSAGHYHSLAVTNNGAVWAWGRNN-EVQLGRGA--LESRATWNDPKRV 113
           L        +  VSAG  H+ AVT +G ++ WGR+  E +LG G   +      + P +V
Sbjct: 180 LLEGPWKDRIVHVSAGGSHTAAVTESGELYTWGRDEGEGRLGHGNPDIMDEGALSRPTKV 239

Query: 114 EGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEK 173
           + LD V +   +  G  + A+   G LW WG +   +LG G        P  V AL    
Sbjct: 240 QALD-VPIALVYCGGFFTMALTKSGQLWSWGGNANHELGHGTRANN-WKPKVVAALEDVT 297

Query: 174 IVKVSFGWGHALAQTEDGKLFGWGYSADGRIGN--LGKALESSPLDSNIDRSS------- 224
           +V+V+ G  HA A T+DGK+  WGY  +G++G+  L    E + +++  D++        
Sbjct: 298 LVQVACGGFHAAALTQDGKVITWGYGGNGQLGHGTLENGKEPAIVEAMADKTCTYIACGP 357

Query: 225 ------ESDQEISSSTIEKAQKLVSEGMEKEKYMPII--WEPFLVEG--VEVVDIACGFD 274
                   + ++ +    +  +L   G++ E+  P++  +   L E   VEV+ ++CG +
Sbjct: 358 AWTAAITENGDLYTWGKNRDYQLGIPGLKDEQLDPVLVQFPQALHEKTPVEVLGVSCGAN 417

Query: 275 HSLVL 279
           H + +
Sbjct: 418 HGVCI 422



 Score = 71.2 bits (173), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 88/335 (26%), Positives = 140/335 (41%), Gaps = 68/335 (20%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAW 88
           V  +G G  G LG+ T       + Y+P   P +   V   SAG  H++A+T  G V+ W
Sbjct: 106 VFVWGKGDGGRLGIDTEF-----NQYKPYVNPRI-KRVQMASAGGLHNIALTEVGNVYTW 159

Query: 89  GRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSK- 147
           G      LG G+ E       P+ +EG  +  +    A G  ++A+ + G L+ WG+ + 
Sbjct: 160 GYGAFGALGHGSYERELL---PRLLEGPWKDRIVHVSAGGSHTAAVTESGELYTWGRDEG 216

Query: 148 RGQLGLGK-DITEAIV---PSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGR 203
            G+LG G  DI +      P++V+AL    I  V  G    +A T+ G+L+ WG +A+  
Sbjct: 217 EGRLGHGNPDIMDEGALSRPTKVQAL-DVPIALVYCGGFFTMALTKSGQLWSWGGNANHE 275

Query: 204 IGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEG 263
           +G+  +A    P                        K+V+                 +E 
Sbjct: 276 LGHGTRANNWKP------------------------KVVAA----------------LED 295

Query: 264 VEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFHP----VSISS 319
           V +V +ACG  H+  L ++G +++ G    GQLG    + G  P  +          I+ 
Sbjct: 296 VTLVQVACGGFHAAALTQDGKVITWGYGGNGQLGHGTLENGKEPAIVEAMADKTCTYIAC 355

Query: 320 GLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLG 354
           G   + AI E            + +WG NR  QLG
Sbjct: 356 GPAWTAAITENGD---------LYTWGKNRDYQLG 381



 Score = 48.5 bits (114), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 76/333 (22%), Positives = 136/333 (40%), Gaps = 73/333 (21%)

Query: 85  VWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAF------------------- 125
           VWAWGR    Q+G G+        D +++  L      AAF                   
Sbjct: 37  VWAWGRGTHGQVGHGS-------EDTEKLPVLISTLKLAAFTGMAPIQGRMPAKPRLGNV 89

Query: 126 --ASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITE--AIVPSRVEALAGEKIVKVSFGW 181
               G+  S +  +  ++VWGK   G+LG+  +  +    V  R+     +++   S G 
Sbjct: 90  GVTCGLFHSVLFAEQDVFVWGKGDGGRLGIDTEFNQYKPYVNPRI-----KRVQMASAGG 144

Query: 182 GHALAQTEDGKLFGWGYSADGRIGN-------LGKALESSPLDSNIDRSSESDQEISSST 234
            H +A TE G ++ WGY A G +G+       L + LE    D  +  S+       ++ 
Sbjct: 145 LHNIALTEVGNVYTWGYGAFGALGHGSYERELLPRLLEGPWKDRIVHVSAGGSH---TAA 201

Query: 235 IEKAQKLVSEGM-EKEKYM----PIIWE------PFLVEGVEV--VDIACGFDHSLVLGR 281
           + ++ +L + G  E E  +    P I +      P  V+ ++V    + CG   ++ L +
Sbjct: 202 VTESGELYTWGRDEGEGRLGHGNPDIMDEGALSRPTKVQALDVPIALVYCGGFFTMALTK 261

Query: 282 NGVLLSCGSNVYGQLGREKQDMGMFPVDI----NFHPVSISSGLGHSLAICEVRSSNVTG 337
           +G L S G N   +LG   +     P  +    +   V ++ G  H+ A+ +        
Sbjct: 262 SGQLWSWGGNANHELGHGTRANNWKPKVVAALEDVTLVQVACGGFHAAALTQDGK----- 316

Query: 338 GARGIVSWGWNRSSQLGRMGPDN--VPLVVEGL 368
               +++WG+  + QLG    +N   P +VE +
Sbjct: 317 ----VITWGYGGNGQLGHGTLENGKEPAIVEAM 345


>gi|167517927|ref|XP_001743304.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163778403|gb|EDQ92018.1| predicted protein [Monosiga brevicollis MX1]
          Length = 850

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 73/250 (29%), Positives = 118/250 (47%), Gaps = 17/250 (6%)

Query: 59  VPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQ 118
           V GL S+     +   H LAVT  G V++WG N+  QLGR  + +R     P ++  L+ 
Sbjct: 80  VEGLESERFIQVSATSHVLAVTLQGEVYSWGSNSYKQLGRDGVNNR-----PMKITALEG 134

Query: 119 VNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALA-GEKIVKV 177
             V    A G  S+A+   G+L+ WG+   G+LG G    +  VP+RV A   G ++V V
Sbjct: 135 EEVVQVCAGGHHSAAVSKAGNLYTWGRGGYGRLGHGTS-DDVNVPTRVAAFPEGIRVVHV 193

Query: 178 SFGWG--HALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTI 235
           + G G  H++  TEDG ++ +G    G++G+        P   + D         +S+ I
Sbjct: 194 ACGLGDAHSMCVTEDGHIYSFGDGDFGKLGHGTNDRRRQPERIDFDIVKVVCGSSTSAAI 253

Query: 236 EKAQKLVSEGMEKEKYM-----PIIWEPFLVEGV---EVVDIACGFDHSLVLGRNGVLLS 287
             +  L   G  +   +      +IW+P     +   +VVD A   +H + +   G +  
Sbjct: 254 SLSGALYVWGGGRRYRLGTGTEAVIWQPRTAHALNTHKVVDCALSSEHGVAVTDRGEVFV 313

Query: 288 CGSNVYGQLG 297
            G+N +GQLG
Sbjct: 314 WGANDHGQLG 323



 Score = 62.4 bits (150), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 72/280 (25%), Positives = 112/280 (40%), Gaps = 54/280 (19%)

Query: 67  TSVSAGHYHSLAVTNNGAVWAWGRN----NEVQLGRGALESRATWNDPKRVEGLDQVNVC 122
           T ++ G   +  +   G +W+ G +    N+V+   G  ES         VEGL+     
Sbjct: 35  THIALGQRGTFVIDGEGRLWSCGSHTRPQNDVKSFLGHAESSLAL-----VEGLESERFI 89

Query: 123 AAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWG 182
              A+  V  A+   G ++ WG +   QLG  +D      P ++ AL GE++V+V  G  
Sbjct: 90  QVSATSHVL-AVTLQGEVYSWGSNSYKQLG--RDGVNN-RPMKITALEGEEVVQVCAGGH 145

Query: 183 HALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLV 242
           H+ A ++ G L+ WG    GR+G+                                    
Sbjct: 146 HSAAVSKAGNLYTWGRGGYGRLGH------------------------------------ 169

Query: 243 SEGMEKEKYMPIIWEPFLVEGVEVVDIACGF--DHSLVLGRNGVLLSCGSNVYGQLGREK 300
             G   +  +P     F  EG+ VV +ACG    HS+ +  +G + S G   +G+LG   
Sbjct: 170 --GTSDDVNVPTRVAAF-PEGIRVVHVACGLGDAHSMCVTEDGHIYSFGDGDFGKLGHGT 226

Query: 301 QDMGMFPVDINFHPVSISSGLGHSLAICEVRSSNVTGGAR 340
            D    P  I+F  V +  G   S AI    +  V GG R
Sbjct: 227 NDRRRQPERIDFDIVKVVCGSSTSAAISLSGALYVWGGGR 266



 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 44/144 (30%), Positives = 63/144 (43%), Gaps = 11/144 (7%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAW 88
           + SFGDG  G LG      G      +P R+     D+  V  G   S A++ +GA++ W
Sbjct: 211 IYSFGDGDFGKLG-----HGTNDRRRQPERID---FDIVKVVCGSSTSAAISLSGALYVW 262

Query: 89  GRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKR 148
           G     +LG G   + A    P+    L+   V     S     A+ D G ++VWG +  
Sbjct: 263 GGGRRYRLGTG---TEAVIWQPRTAHALNTHKVVDCALSSEHGVAVTDRGEVFVWGANDH 319

Query: 149 GQLGLGKDITEAIVPSRVEALAGE 172
           GQLG      + I+  RV  L GE
Sbjct: 320 GQLGADAGSEKTIIAPRVIKLPGE 343


>gi|308799553|ref|XP_003074557.1| protein kinase, putative (ISS) [Ostreococcus tauri]
 gi|116000728|emb|CAL50408.1| protein kinase, putative (ISS) [Ostreococcus tauri]
          Length = 1813

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 78/310 (25%), Positives = 134/310 (43%), Gaps = 79/310 (25%)

Query: 29  VVSFGDGSQGALG---LPTSLTGVGGDAYEPTRVPGLPSDVTS----------VSAGHYH 75
           V ++G    G LG   +P  L  +  +A++ ++   LP+ V +          +++G +H
Sbjct: 326 VYTWGADDLGQLGRGWMPGMLQSIKSEAFKKSK--SLPARVVNNGFRGVVTVDIASGEFH 383

Query: 76  SLAVTNNGAVWAWGRNNEVQL----------GRGALESRAT-----WNDPKRVEGLDQVN 120
           +LA+T++G +WAWG N E QL          G G  E R +     + D  ++  +    
Sbjct: 384 TLALTSSGDIWAWGSNIEGQLGLKPCEISKYGNGLGECRESAPEMPYTDSPQIVAVGANV 443

Query: 121 VCAAFASGVVSS---AIGDD-----GSLWVWGKSKRGQLGL---GKDITEAIVPSRVEAL 169
             AA A+G   S      D+     G ++ WG  + GQLGL   G+++  A+VP  +  L
Sbjct: 444 KFAAIAAGARYSMALTAADETGAGGGRVFAWGYGENGQLGLVLDGRNVERALVPQPLTTL 503

Query: 170 AGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQE 229
             E IV ++ G  H  A    G+L+ WG +  G++G+             +DR   +  +
Sbjct: 504 GDEVIVFIAAGESHVAAIASTGELYTWGSNTFGQLGH----------GDRVDRGKPTKVQ 553

Query: 230 ISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCG 289
           I S                               +++  ++CG  H++ +   G + + G
Sbjct: 554 ILSDA----------------------------NIKIHSVSCGRSHTVAVSDYGEVFTWG 585

Query: 290 SNVYGQLGRE 299
           SN YGQLG E
Sbjct: 586 SNEYGQLGTE 595



 Score = 82.0 bits (201), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 97/371 (26%), Positives = 149/371 (40%), Gaps = 93/371 (25%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAW 88
           V  +G  ++  LGL T        A +P R+  L + +T ++AG +H +A+T +G V+ W
Sbjct: 271 VWGWGYDARRVLGLETVTPSASTIAAQPVRIGSL-ALITKLAAGAFHVVAMTESGKVYTW 329

Query: 89  GRNNEVQLGRG-------ALESRA---TWNDPKRV--EGLDQVNVCAAFASGVVSS-AIG 135
           G ++  QLGRG       +++S A   + + P RV   G   V V    ASG   + A+ 
Sbjct: 330 GADDLGQLGRGWMPGMLQSIKSEAFKKSKSLPARVVNNGFRGV-VTVDIASGEFHTLALT 388

Query: 136 DDGSLWVWGKSKRGQLGL------------------GKDITEAIVPSRVEALAGEKIVKV 177
             G +W WG +  GQLGL                    ++     P  V   A  K   +
Sbjct: 389 SSGDIWAWGSNIEGQLGLKPCEISKYGNGLGECRESAPEMPYTDSPQIVAVGANVKFAAI 448

Query: 178 SFGWGHALAQTE-------DGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEI 230
           + G  +++A T         G++F WGY  +G++G                         
Sbjct: 449 AAGARYSMALTAADETGAGGGRVFAWGYGENGQLG------------------------- 483

Query: 231 SSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEV-VDIACGFDHSLVLGRNGVLLSCG 289
                     LV +G   E+   ++ +P    G EV V IA G  H   +   G L + G
Sbjct: 484 ----------LVLDGRNVER--ALVPQPLTTLGDEVIVFIAAGESHVAAIASTGELYTWG 531

Query: 290 SNVYGQLG------REKQDMGMFPVDINFHPVSISSGLGHSLAICEVRSSNVTGGARGIV 343
           SN +GQLG      R K        D N    S+S G  H++A+ +            + 
Sbjct: 532 SNTFGQLGHGDRVDRGKPTKVQILSDANIKIHSVSCGRSHTVAVSDYGE---------VF 582

Query: 344 SWGWNRSSQLG 354
           +WG N   QLG
Sbjct: 583 TWGSNEYGQLG 593



 Score = 74.3 bits (181), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 83/302 (27%), Positives = 121/302 (40%), Gaps = 57/302 (18%)

Query: 81  NNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAI-GDDGS 139
           ++  V+ WG N   QL  G   SR           + Q    AA  SG     I  + G 
Sbjct: 211 SSSVVYGWGDNGMKQLSLGDDISRTFPETNTNFAQVKQFTYIAATLSGETVFGIEHESGY 270

Query: 140 LWVWGKSKRGQLGL----GKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFG 195
           +W WG   R  LGL        T A  P R+ +LA   I K++ G  H +A TE GK++ 
Sbjct: 271 VWGWGYDARRVLGLETVTPSASTIAAQPVRIGSLA--LITKLAAGAFHVVAMTESGKVYT 328

Query: 196 WGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPII 255
           WG  AD  +G LG+      L                      Q + SE  +K K +P  
Sbjct: 329 WG--ADD-LGQLGRGWMPGML----------------------QSIKSEAFKKSKSLPAR 363

Query: 256 WEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMF--------- 306
                  GV  VDIA G  H+L L  +G + + GSN+ GQLG +  ++  +         
Sbjct: 364 VVNNGFRGVVTVDIASGEFHTLALTSSGDIWAWGSNIEGQLGLKPCEISKYGNGLGECRE 423

Query: 307 --------------PVDINFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQ 352
                          V  N    +I++G  +S+A+     +   GG   + +WG+  + Q
Sbjct: 424 SAPEMPYTDSPQIVAVGANVKFAAIAAGARYSMALTAADETGAGGGR--VFAWGYGENGQ 481

Query: 353 LG 354
           LG
Sbjct: 482 LG 483


>gi|374297496|ref|YP_005047687.1| copper amine oxidase family protein [Clostridium clariflavum DSM
           19732]
 gi|359826990|gb|AEV69763.1| copper amine oxidase family protein [Clostridium clariflavum DSM
           19732]
          Length = 841

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 59/207 (28%), Positives = 105/207 (50%), Gaps = 21/207 (10%)

Query: 56  PTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEG 115
           P ++  L +++  ++AG  H LA+ N+G VW WG   E+ + RG ++     + P ++E 
Sbjct: 364 PKKLKDL-NNIIDIAAGQSHLLALKNDGTVWIWGNFEEMPVYRGQVKKNTDTSLPVKIEE 422

Query: 116 LDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIV 175
           L    + A  A G  S+ + DDGS++VW     G L    DI + +VP+ +E L G  + 
Sbjct: 423 LK--GIIAIAAQGGYSALLKDDGSMFVW-----GYLDSELDIDDHLVPTIIEELNG--VR 473

Query: 176 KVSFGWGHALAQTEDGKLFGWGYSADGRIGN---------LGKALESSPL--DSNIDRSS 224
           +++ G GH LA  +DG L+ +G + +G+IG+            A    PL     + ++ 
Sbjct: 474 EIAAGGGHLLAFKDDGSLWAFGRNTNGQIGDGTTISRKKPTVTAFNKDPLVVTEIVAKAK 533

Query: 225 ESDQEISSSTIEKAQKLVSEGMEKEKY 251
             + +   +T+++  KL  E + K  Y
Sbjct: 534 AFENKFDDATVKELDKLTDELLTKYDY 560



 Score = 80.5 bits (197), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 67/221 (30%), Positives = 108/221 (48%), Gaps = 26/221 (11%)

Query: 69  VSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASG 128
           VS G+ HS+A+  +G VW WG   E   G   +        P+RVEGL+++      A  
Sbjct: 194 VSGGYSHSVAIKRDGTVWEWG---ETLSGNKLI--------PERVEGLERI--IDISAGN 240

Query: 129 VVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQT 188
             + A+  DG++W WGK++ G +G G  I     P +V+ L   K +  SFG GH LA  
Sbjct: 241 KYTLALKIDGTVWAWGKNEDGNIGDGTQIDRE-TPVKVKNLTKIKRIAASFG-GHCLAVN 298

Query: 189 EDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEIS----SSTIEKAQKLVSE 244
            DGK++ WG +  G++G   K  E +P+   ID+ ++ +        S+ ++K   + + 
Sbjct: 299 TDGKVWAWGNNDYGQLGTGTKKAELTPV--MIDKLTQIEDVAVGYNFSAALDKEGNVWTW 356

Query: 245 GMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVL 285
           G  +  Y        L +   ++DIA G  H L L  +G +
Sbjct: 357 GNNENSY-----PKKLKDLNNIIDIAAGQSHLLALKNDGTV 392



 Score = 77.8 bits (190), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 48/150 (32%), Positives = 81/150 (54%), Gaps = 10/150 (6%)

Query: 49  VGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWN 108
           + G+   P RV GL   +  +SAG+ ++LA+  +G VWAWG+N +  +G G    R T  
Sbjct: 217 LSGNKLIPERVEGLER-IIDISAGNKYTLALKIDGTVWAWGKNEDGNIGDGTQIDRET-- 273

Query: 109 DPKRVEGLDQVN-VCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVE 167
            P +V+ L ++  + A+F    +  A+  DG +W WG +  GQLG G    E + P  ++
Sbjct: 274 -PVKVKNLTKIKRIAASFGGHCL--AVNTDGKVWAWGNNDYGQLGTGTKKAE-LTPVMID 329

Query: 168 ALAGEKIVKVSFGWGHALAQTEDGKLFGWG 197
            L   +I  V+ G+  + A  ++G ++ WG
Sbjct: 330 KLT--QIEDVAVGYNFSAALDKEGNVWTWG 357



 Score = 62.0 bits (149), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 72/291 (24%), Positives = 114/291 (39%), Gaps = 94/291 (32%)

Query: 48  GVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRAT- 106
           G   D   P +V  L       ++   H LAV  +G VWAWG N+  QLG G  ++  T 
Sbjct: 266 GTQIDRETPVKVKNLTKIKRIAASFGGHCLAVNTDGKVWAWGNNDYGQLGTGTKKAELTP 325

Query: 107 ------------------------------WND-----PKRVEGLDQVNVCAAFASGVVS 131
                                         W +     PK+++ L+ +   AA  S ++ 
Sbjct: 326 VMIDKLTQIEDVAVGYNFSAALDKEGNVWTWGNNENSYPKKLKDLNNIIDIAAGQSHLL- 384

Query: 132 SAIGDDGSLWVWGKSK-----RGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALA 186
            A+ +DG++W+WG  +     RGQ+   K  T+  +P ++E L G  I+ ++   G++  
Sbjct: 385 -ALKNDGTVWIWGNFEEMPVYRGQV---KKNTDTSLPVKIEELKG--IIAIAAQGGYSAL 438

Query: 187 QTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGM 246
             +DG +F WGY                 LDS +D     D  +  + IE+         
Sbjct: 439 LKDDGSMFVWGY-----------------LDSELD----IDDHLVPTIIEE--------- 468

Query: 247 EKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLG 297
                         + GV   +IA G  H L    +G L + G N  GQ+G
Sbjct: 469 --------------LNGVR--EIAAGGGHLLAFKDDGSLWAFGRNTNGQIG 503


>gi|291221016|ref|XP_002730519.1| PREDICTED: predicted protein-like, partial [Saccoglossus
           kowalevskii]
          Length = 353

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 81/293 (27%), Positives = 128/293 (43%), Gaps = 60/293 (20%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAW 88
           + SFG GS G LG     TG    A  P  +         +SAG  HS A+T +G ++ W
Sbjct: 109 LYSFGAGSDGQLG-----TGDAQCATSPQLINLPEQKYKLLSAGTDHSAALTTDGTLYMW 163

Query: 89  GRNNEVQLGRGALESRATWNDPKRVEGLDQVN--VCAAFASGVVSSAIGDDGSLWVWGKS 146
           G  +E QLG G  +S  T   PK ++    V+   C  + + +V+    DDG L+ +G+ 
Sbjct: 164 GSGSEGQLGLGNTDSVET---PKELKFHSSVSWVSCGYYHTAIVT----DDGKLYTFGEK 216

Query: 147 KRGQLGLGKD-ITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIG 205
           + G+LGL +D + +   P  VE++  EKI  V+ G  H    ++ G L+ +G    G++G
Sbjct: 217 EFGKLGLTEDQLEDTTTPKHVESIT-EKIKLVACGGAHTAVISDVGNLYTFGDGMHGQLG 275

Query: 206 NLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVE 265
           N G +L    L   + R SE                      K KY              
Sbjct: 276 N-GPSLLQLSLPQKVARLSE---------------------HKCKY-------------- 299

Query: 266 VVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFHPVSIS 318
              ++CG +H+ V+   G + + G   +G+LG  ++D         F P  +S
Sbjct: 300 ---VSCGDNHTAVITEKGAMYTFGDGRHGKLGISEEDFCNI-----FKPCKVS 344



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 68/242 (28%), Positives = 108/242 (44%), Gaps = 20/242 (8%)

Query: 69  VSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQ--VNVCAAFA 126
           +S G  HS  +T +G ++ +G N+  QLG G ++       P  V+ L Q  VN+ A   
Sbjct: 41  ISCGDEHSAIITESGRLYTFGSNDWGQLGLGHMKPT---TKPGCVKSLKQEGVNLVACGR 97

Query: 127 SGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALA 186
           S  +       G L+ +G    GQLG G D   A  P  +  L  +K   +S G  H+ A
Sbjct: 98  SHTIVCTKA--GRLYSFGAGSDGQLGTG-DAQCATSPQLIN-LPEQKYKLLSAGTDHSAA 153

Query: 187 QTEDGKLFGWGYSADGR--IGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSE 244
            T DG L+ WG  ++G+  +GN         L  +   S  S     ++ +    KL + 
Sbjct: 154 LTTDGTLYMWGSGSEGQLGLGNTDSVETPKELKFHSSVSWVSCGYYHTAIVTDDGKLYTF 213

Query: 245 GMEK-------EKYMPIIWEPFLVEGV--EVVDIACGFDHSLVLGRNGVLLSCGSNVYGQ 295
           G ++       E  +     P  VE +  ++  +ACG  H+ V+   G L + G  ++GQ
Sbjct: 214 GEKEFGKLGLTEDQLEDTTTPKHVESITEKIKLVACGGAHTAVISDVGNLYTFGDGMHGQ 273

Query: 296 LG 297
           LG
Sbjct: 274 LG 275


>gi|218295698|ref|ZP_03496494.1| regulator of chromosome condensation RCC1 [Thermus aquaticus
           Y51MC23]
 gi|218243857|gb|EED10384.1| regulator of chromosome condensation RCC1 [Thermus aquaticus
           Y51MC23]
          Length = 345

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 95/308 (30%), Positives = 146/308 (47%), Gaps = 42/308 (13%)

Query: 55  EPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVE 114
           +P RV      V  V+AG+ HSLA+   G V A+G     QLG G     AT   P  + 
Sbjct: 56  KPVRVL---EGVLEVAAGNLHSLALLEGGLVLAFGNGERGQLGDGTF---ATKGKPVELP 109

Query: 115 GLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLG-KDITEAIVPSRVEALAGEK 173
            L    V A ++  +V   +G DG ++  G ++ GQLG G +       P  VE L    
Sbjct: 110 -LKARGVAAGYSHTLV---LGLDGRVYTAGSNEEGQLGDGSRRGRNRFAP--VEGL--PP 161

Query: 174 IVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNI---DRSSESDQEI 230
            V V+ G+ H+LA T+ G+L+ WG +  G++G     +ESSP    +    R +      
Sbjct: 162 AVGVAAGYFHSLAWTQSGELYAWGSNLSGQLGT--GTVESSPRPQRVLTGVRLAVGGGSF 219

Query: 231 SSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGV-EVVDIACGFDHSLVLGRNGVLLSCG 289
           ++  +E    L++ G++   +         VEG+ + V +A G+ H L+LG +G + + G
Sbjct: 220 TALLLEDGSVLIA-GLDSATFRK-------VEGLPKAVALAAGWAHLLILGEDGRVYALG 271

Query: 290 SNVYGQLGREKQDMGM--FPVDINFHPVSISSGLGHSLAICEVRSSNVTGGARG-IVSWG 346
            N  GQLG   Q+  +   PV+      +I +G  HSLA+           A G + +WG
Sbjct: 272 ENEMGQLGDGTQESRLEPRPVEGLLGVRAIGAGDAHSLALL----------ADGRLFAWG 321

Query: 347 WNRSSQLG 354
            NR  QLG
Sbjct: 322 DNRFGQLG 329



 Score = 69.3 bits (168), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 95/317 (29%), Positives = 144/317 (45%), Gaps = 35/317 (11%)

Query: 1   MRLLKSVVHNHVNVLTSRIFMRSASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVP 60
           +R+L+ V+      L S   +    G  V++FG+G +G LG  T  T   G   E     
Sbjct: 58  VRVLEGVLEVAAGNLHSLALL---EGGLVLAFGNGERGQLGDGTFATK--GKPVE----- 107

Query: 61  GLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGL-DQV 119
            LP     V+AG+ H+L +  +G V+  G N E QLG G+   R   N    VEGL   V
Sbjct: 108 -LPLKARGVAAGYSHTLVLGLDGRVYTAGSNEEGQLGDGSRRGR---NRFAPVEGLPPAV 163

Query: 120 NVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSF 179
            V A +     S A    G L+ WG +  GQLG G  +  +  P RV  L G   V+++ 
Sbjct: 164 GVAAGYFH---SLAWTQSGELYAWGSNLSGQLGTGT-VESSPRPQRV--LTG---VRLAV 214

Query: 180 GWGHALA-QTEDGKLF--GWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIE 236
           G G   A   EDG +   G   +   ++  L KA+  +   +++    E  +  +    E
Sbjct: 215 GGGSFTALLLEDGSVLIAGLDSATFRKVEGLPKAVALAAGWAHLLILGEDGRVYALGENE 274

Query: 237 KAQKLVSEGMEKEKYMPIIWEPFLVEG-VEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQ 295
             Q  + +G ++ +      EP  VEG + V  I  G  HSL L  +G L + G N +GQ
Sbjct: 275 MGQ--LGDGTQESRL-----EPRPVEGLLGVRAIGAGDAHSLALLADGRLFAWGDNRFGQ 327

Query: 296 LGREKQDMGMFPVDINF 312
           LG   +++ + PV +  
Sbjct: 328 LGDGTREVRLRPVQVRL 344



 Score = 48.1 bits (113), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 54/192 (28%), Positives = 86/192 (44%), Gaps = 38/192 (19%)

Query: 180 GWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQ 239
           G GH+LA  + G+L+ +G++ DG++G+      S P+     R  E   E+++  +    
Sbjct: 23  GQGHSLAVIQ-GRLYAFGWNYDGQLGDGSFLNRSKPV-----RVLEGVLEVAAGNLHSLA 76

Query: 240 KL---------------VSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGV 284
            L               + +G    K  P+   P    GV     A G+ H+LVLG +G 
Sbjct: 77  LLEGGLVLAFGNGERGQLGDGTFATKGKPVEL-PLKARGV-----AAGYSHTLVLGLDGR 130

Query: 285 LLSCGSNVYGQLGR-EKQDMGMF-PVDINFHPVSISSGLGHSLAICEVRSSNVTGGARGI 342
           + + GSN  GQLG   ++    F PV+     V +++G  HSLA  +            +
Sbjct: 131 VYTAGSNEEGQLGDGSRRGRNRFAPVEGLPPAVGVAAGYFHSLAWTQSGE---------L 181

Query: 343 VSWGWNRSSQLG 354
            +WG N S QLG
Sbjct: 182 YAWGSNLSGQLG 193


  Database: nr
    Posted date:  Mar 3, 2013 10:45 PM
  Number of letters in database: 999,999,864
  Number of sequences in database:  2,912,245
  
  Database: /local_scratch/syshi//blastdatabase/nr.01
    Posted date:  Mar 3, 2013 10:52 PM
  Number of letters in database: 999,999,666
  Number of sequences in database:  2,912,720
  
  Database: /local_scratch/syshi//blastdatabase/nr.02
    Posted date:  Mar 3, 2013 10:58 PM
  Number of letters in database: 999,999,938
  Number of sequences in database:  3,014,250
  
  Database: /local_scratch/syshi//blastdatabase/nr.03
    Posted date:  Mar 3, 2013 11:03 PM
  Number of letters in database: 999,999,780
  Number of sequences in database:  2,805,020
  
  Database: /local_scratch/syshi//blastdatabase/nr.04
    Posted date:  Mar 3, 2013 11:08 PM
  Number of letters in database: 999,999,551
  Number of sequences in database:  2,816,253
  
  Database: /local_scratch/syshi//blastdatabase/nr.05
    Posted date:  Mar 3, 2013 11:13 PM
  Number of letters in database: 999,999,897
  Number of sequences in database:  2,981,387
  
  Database: /local_scratch/syshi//blastdatabase/nr.06
    Posted date:  Mar 3, 2013 11:18 PM
  Number of letters in database: 999,999,649
  Number of sequences in database:  2,911,476
  
  Database: /local_scratch/syshi//blastdatabase/nr.07
    Posted date:  Mar 3, 2013 11:24 PM
  Number of letters in database: 999,999,452
  Number of sequences in database:  2,920,260
  
  Database: /local_scratch/syshi//blastdatabase/nr.08
    Posted date:  Mar 3, 2013 11:25 PM
  Number of letters in database: 64,230,274
  Number of sequences in database:  189,558
  
Lambda     K      H
   0.314    0.133    0.401 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,073,783,328
Number of Sequences: 23463169
Number of extensions: 264490248
Number of successful extensions: 644561
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 3219
Number of HSP's successfully gapped in prelim test: 2195
Number of HSP's that attempted gapping in prelim test: 560992
Number of HSP's gapped (non-prelim): 37967
length of query: 372
length of database: 8,064,228,071
effective HSP length: 144
effective length of query: 228
effective length of database: 8,980,499,031
effective search space: 2047553779068
effective search space used: 2047553779068
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 77 (34.3 bits)