BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042844
(372 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4DNV|A Chain A, Crystal Structure Of The W285f Mutant Of Uvb-Resistance
Protein Uvr8
pdb|4DNV|B Chain B, Crystal Structure Of The W285f Mutant Of Uvb-Resistance
Protein Uvr8
pdb|4DNV|C Chain C, Crystal Structure Of The W285f Mutant Of Uvb-Resistance
Protein Uvr8
pdb|4DNV|D Chain D, Crystal Structure Of The W285f Mutant Of Uvb-Resistance
Protein Uvr8
Length = 370
Score = 108 bits (271), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 97/353 (27%), Positives = 152/353 (43%), Gaps = 65/353 (18%)
Query: 23 SASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPS-DVTSVSAGHYHSLAVTN 81
S SG V S+G G G LG G D + P + L + ++ G H LAVT
Sbjct: 72 SQSGMEVYSWGWGDFGRLG-----HGNSSDLFTPLPIKALHGIRIKQIACGDSHCLAVTM 126
Query: 82 NGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLW 141
G V +WGRN QLG G E P++++ + + + A ++A+ +DG L+
Sbjct: 127 EGEVQSWGRNQNGQLGLGDTEDSLV---PQKIQAFEGIRIKMVAAGAEHTAAVTEDGDLY 183
Query: 142 VWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSAD 201
WG + G LGLG D T+ +VP RV + GEK+ V+ GW H ++ + G L+ +G+S
Sbjct: 184 GWGWGRYGNLGLG-DRTDRLVPERVTSTGGEKMSMVACGWRHTISVSYSGALYTYGWSKY 242
Query: 202 GRIGNLGKALESSPLDSNXXXXXXXXXXXXXXXXXKAQKLVSEGMEKEKYMPIIWEPFLV 261
G++G+ G ++ +P E +
Sbjct: 243 GQLGH--------------------------------------GDLEDHLIPHKLEA--L 262
Query: 262 EGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINF----HPVSI 317
+ I+ GF H++ L +G L G N +GQ+G PV + F V +
Sbjct: 263 SNSFISQISGGFRHTMALTSDGKLYGWGWNKFGQVGVGNNLDQCSPVQVRFPDDQKVVQV 322
Query: 318 SSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQL--GRMGPDNVPLVVEGL 368
S G H+LA+ E + + +WG + QL G N P ++E L
Sbjct: 323 SCGWRHTLAVTERNN---------VFAWGRGTNGQLGIGESVDRNFPKIIEAL 366
Score = 89.7 bits (221), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 89/346 (25%), Positives = 135/346 (39%), Gaps = 104/346 (30%)
Query: 63 PSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVC 122
P V +SAG HS+A+ + V +WGR + QLG G E R + ++G V+V
Sbjct: 3 PRKVLIISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVT 62
Query: 123 AAFASGVVSS------------------------------------------AIGD---- 136
V S A GD
Sbjct: 63 CGADHTVAYSQSGMEVYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIACGDSHCL 122
Query: 137 ----DGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGK 192
+G + WG+++ GQLGLG D +++VP +++A G +I V+ G H A TEDG
Sbjct: 123 AVTMEGEVQSWGRNQNGQLGLG-DTEDSLVPQKIQAFEGIRIKMVAAGAEHTAAVTEDGD 181
Query: 193 LFGWGYSADGRIGNLGKALESSPLDSNXXXXXXXXXXXXXXXXXKAQKLVSEGMEKEKYM 252
L+GWG+ GR GNLG + L +++ S G EK
Sbjct: 182 LYGWGW---GRYGNLGLGDRTDRL--------------------VPERVTSTGGEKMSM- 217
Query: 253 PIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDI-- 310
+ACG+ H++ + +G L + G + YGQLG + + P +
Sbjct: 218 ----------------VACGWRHTISVSYSGALYTYGWSKYGQLGHGDLEDHLIPHKLEA 261
Query: 311 --NFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLG 354
N IS G H++A+ + WGWN+ Q+G
Sbjct: 262 LSNSFISQISGGFRHTMALTSDGK---------LYGWGWNKFGQVG 298
Score = 77.8 bits (190), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 61/194 (31%), Positives = 96/194 (49%), Gaps = 17/194 (8%)
Query: 32 FGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTS-VSAGHYHSLAVTNNGAVWAWGR 90
+G G G LGL G D P RV + S V+ G H+++V+ +GA++ +G
Sbjct: 185 WGWGRYGNLGL-----GDRTDRLVPERVTSTGGEKMSMVACGWRHTISVSYSGALYTYGW 239
Query: 91 NNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQ 150
+ QLG G LE P ++E L + + A+ DG L+ WG +K GQ
Sbjct: 240 SKYGQLGHGDLEDHLI---PHKLEALSNSFISQISGGFRHTMALTSDGKLYGWGWNKFGQ 296
Query: 151 LGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIG----- 205
+G+G ++ + P +V +K+V+VS GW H LA TE +F WG +G++G
Sbjct: 297 VGVGNNLDQC-SPVQVRFPDDQKVVQVSCGWRHTLAVTERNNVFAWGRGTNGQLGIGESV 355
Query: 206 --NLGKALESSPLD 217
N K +E+ +D
Sbjct: 356 DRNFPKIIEALSVD 369
Score = 36.6 bits (83), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 55/117 (47%), Gaps = 16/117 (13%)
Query: 261 VEGVEVVDIACGFDHSLVLGRNGV-LLSCGSNVYGQLGREKQDMGMFPVDIN-FHPV--- 315
++G ++V + CG DH++ ++G+ + S G +G+LG P+ I H +
Sbjct: 53 LDGHQIVSVTCGADHTVAYSQSGMEVYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIK 112
Query: 316 SISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPDN--VPLVVEGLEG 370
I+ G H LA+ + SWG N++ QLG ++ VP ++ EG
Sbjct: 113 QIACGDSHCLAVTMEGE---------VQSWGRNQNGQLGLGDTEDSLVPQKIQAFEG 160
Score = 31.2 bits (69), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 48/115 (41%), Gaps = 20/115 (17%)
Query: 265 EVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDIN----FHPVSISSG 320
+V+ I+ G HS+ L ++ S G GQLG + P ++ VS++ G
Sbjct: 5 KVLIISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCG 64
Query: 321 LGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPDN-----VPLVVEGLEG 370
H++A + + SWGW GR+G N PL ++ L G
Sbjct: 65 ADHTVAYSQ--------SGMEVYSWGWG---DFGRLGHGNSSDLFTPLPIKALHG 108
>pdb|4DNW|A Chain A, Crystal Structure Of Uvb-Resistance Protein Uvr8
pdb|4DNW|B Chain B, Crystal Structure Of Uvb-Resistance Protein Uvr8
Length = 374
Score = 107 bits (266), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 96/353 (27%), Positives = 152/353 (43%), Gaps = 65/353 (18%)
Query: 23 SASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPS-DVTSVSAGHYHSLAVTN 81
S SG V S+G G G LG G D + P + L + ++ G H LAVT
Sbjct: 72 SQSGMEVYSWGWGDFGRLG-----HGNSSDLFTPLPIKALHGIRIKQIACGDSHCLAVTM 126
Query: 82 NGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLW 141
G V +WGRN QLG G E P++++ + + + A ++A+ +DG L+
Sbjct: 127 EGEVQSWGRNQNGQLGLGDTEDSLV---PQKIQAFEGIRIKMVAAGAEHTAAVTEDGDLY 183
Query: 142 VWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSAD 201
WG + G LGLG D T+ +VP RV + GEK+ V+ GW H ++ + G L+ +G+S
Sbjct: 184 GWGWGRYGNLGLG-DRTDRLVPERVTSTGGEKMSMVACGWRHTISVSYSGALYTYGWSKY 242
Query: 202 GRIGNLGKALESSPLDSNXXXXXXXXXXXXXXXXXKAQKLVSEGMEKEKYMPIIWEPFLV 261
G++G+ G ++ +P E +
Sbjct: 243 GQLGH--------------------------------------GDLEDHLIPHKLEA--L 262
Query: 262 EGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINF----HPVSI 317
+ I+ G+ H++ L +G L G N +GQ+G PV + F V +
Sbjct: 263 SNSFISQISGGWRHTMALTSDGKLYGWGWNKFGQVGVGNNLDQCSPVQVRFPDDQKVVQV 322
Query: 318 SSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQL--GRMGPDNVPLVVEGL 368
S G H+LA+ E + + +WG + QL G N P ++E L
Sbjct: 323 SCGWRHTLAVTERNN---------VFAWGRGTNGQLGIGESVDRNFPKIIEAL 366
Score = 88.6 bits (218), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 89/346 (25%), Positives = 135/346 (39%), Gaps = 104/346 (30%)
Query: 63 PSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVC 122
P V +SAG HS+A+ + V +WGR + QLG G E R + ++G V+V
Sbjct: 3 PRKVLIISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVT 62
Query: 123 AAFASGVVSS------------------------------------------AIGD---- 136
V S A GD
Sbjct: 63 CGADHTVAYSQSGMEVYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIACGDSHCL 122
Query: 137 ----DGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGK 192
+G + WG+++ GQLGLG D +++VP +++A G +I V+ G H A TEDG
Sbjct: 123 AVTMEGEVQSWGRNQNGQLGLG-DTEDSLVPQKIQAFEGIRIKMVAAGAEHTAAVTEDGD 181
Query: 193 LFGWGYSADGRIGNLGKALESSPLDSNXXXXXXXXXXXXXXXXXKAQKLVSEGMEKEKYM 252
L+GWG+ GR GNLG + L +++ S G EK
Sbjct: 182 LYGWGW---GRYGNLGLGDRTDRL--------------------VPERVTSTGGEKMSM- 217
Query: 253 PIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDI-- 310
+ACG+ H++ + +G L + G + YGQLG + + P +
Sbjct: 218 ----------------VACGWRHTISVSYSGALYTYGWSKYGQLGHGDLEDHLIPHKLEA 261
Query: 311 --NFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLG 354
N IS G H++A+ + WGWN+ Q+G
Sbjct: 262 LSNSFISQISGGWRHTMALTSDGK---------LYGWGWNKFGQVG 298
Score = 77.8 bits (190), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 61/194 (31%), Positives = 96/194 (49%), Gaps = 17/194 (8%)
Query: 32 FGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTS-VSAGHYHSLAVTNNGAVWAWGR 90
+G G G LGL G D P RV + S V+ G H+++V+ +GA++ +G
Sbjct: 185 WGWGRYGNLGL-----GDRTDRLVPERVTSTGGEKMSMVACGWRHTISVSYSGALYTYGW 239
Query: 91 NNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQ 150
+ QLG G LE P ++E L + + A+ DG L+ WG +K GQ
Sbjct: 240 SKYGQLGHGDLEDHLI---PHKLEALSNSFISQISGGWRHTMALTSDGKLYGWGWNKFGQ 296
Query: 151 LGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIG----- 205
+G+G ++ + P +V +K+V+VS GW H LA TE +F WG +G++G
Sbjct: 297 VGVGNNLDQC-SPVQVRFPDDQKVVQVSCGWRHTLAVTERNNVFAWGRGTNGQLGIGESV 355
Query: 206 --NLGKALESSPLD 217
N K +E+ +D
Sbjct: 356 DRNFPKIIEALSVD 369
Score = 36.6 bits (83), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 55/117 (47%), Gaps = 16/117 (13%)
Query: 261 VEGVEVVDIACGFDHSLVLGRNGV-LLSCGSNVYGQLGREKQDMGMFPVDIN-FHPV--- 315
++G ++V + CG DH++ ++G+ + S G +G+LG P+ I H +
Sbjct: 53 LDGHQIVSVTCGADHTVAYSQSGMEVYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIK 112
Query: 316 SISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPDN--VPLVVEGLEG 370
I+ G H LA+ + SWG N++ QLG ++ VP ++ EG
Sbjct: 113 QIACGDSHCLAVTMEGE---------VQSWGRNQNGQLGLGDTEDSLVPQKIQAFEG 160
Score = 31.6 bits (70), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 48/115 (41%), Gaps = 20/115 (17%)
Query: 265 EVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDIN----FHPVSISSG 320
+V+ I+ G HS+ L ++ S G GQLG + P ++ VS++ G
Sbjct: 5 KVLIISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCG 64
Query: 321 LGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPDN-----VPLVVEGLEG 370
H++A + + SWGW GR+G N PL ++ L G
Sbjct: 65 ADHTVAYSQ--------SGMEVYSWGWG---DFGRLGHGNSSDLFTPLPIKALHG 108
>pdb|4D9S|A Chain A, Crystal Structure Of Arabidopsis Thaliana Uvr8 (Uv
Resistance Locus 8)
pdb|4D9S|B Chain B, Crystal Structure Of Arabidopsis Thaliana Uvr8 (Uv
Resistance Locus 8)
Length = 406
Score = 106 bits (264), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 96/353 (27%), Positives = 152/353 (43%), Gaps = 65/353 (18%)
Query: 23 SASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPS-DVTSVSAGHYHSLAVTN 81
S SG V S+G G G LG G D + P + L + ++ G H LAVT
Sbjct: 84 SQSGMEVYSWGWGDFGRLG-----HGNSSDLFTPLPIKALHGIRIKQIACGDSHCLAVTM 138
Query: 82 NGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLW 141
G V +WGRN QLG G E P++++ + + + A ++A+ +DG L+
Sbjct: 139 EGEVQSWGRNQNGQLGLGDTEDSLV---PQKIQAFEGIRIKMVAAGAEHTAAVTEDGDLY 195
Query: 142 VWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSAD 201
WG + G LGLG D T+ +VP RV + GEK+ V+ GW H ++ + G L+ +G+S
Sbjct: 196 GWGWGRYGNLGLG-DRTDRLVPERVTSTGGEKMSMVACGWRHTISVSYSGALYTYGWSKY 254
Query: 202 GRIGNLGKALESSPLDSNXXXXXXXXXXXXXXXXXKAQKLVSEGMEKEKYMPIIWEPFLV 261
G++G+ G ++ +P E +
Sbjct: 255 GQLGH--------------------------------------GDLEDHLIPHKLEA--L 274
Query: 262 EGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINF----HPVSI 317
+ I+ G+ H++ L +G L G N +GQ+G PV + F V +
Sbjct: 275 SNSFISQISGGWRHTMALTSDGKLYGWGWNKFGQVGVGNNLDQCSPVQVRFPDDQKVVQV 334
Query: 318 SSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQL--GRMGPDNVPLVVEGL 368
S G H+LA+ E + + +WG + QL G N P ++E L
Sbjct: 335 SCGWRHTLAVTERNN---------VFAWGRGTNGQLGIGESVDRNFPKIIEAL 378
Score = 88.6 bits (218), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 90/351 (25%), Positives = 136/351 (38%), Gaps = 104/351 (29%)
Query: 58 RVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLD 117
V P V +SAG HS+A+ + V +WGR + QLG G E R + ++G
Sbjct: 10 EVTAPPRKVLIISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQ 69
Query: 118 QVNVCAAFASGVVSS------------------------------------------AIG 135
V+V V S A G
Sbjct: 70 IVSVTCGADHTVAYSQSGMEVYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIACG 129
Query: 136 D--------DGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQ 187
D +G + WG+++ GQLGLG D +++VP +++A G +I V+ G H A
Sbjct: 130 DSHCLAVTMEGEVQSWGRNQNGQLGLG-DTEDSLVPQKIQAFEGIRIKMVAAGAEHTAAV 188
Query: 188 TEDGKLFGWGYSADGRIGNLGKALESSPLDSNXXXXXXXXXXXXXXXXXKAQKLVSEGME 247
TEDG L+GWG+ GR GNLG + L +++ S G E
Sbjct: 189 TEDGDLYGWGW---GRYGNLGLGDRTDRL--------------------VPERVTSTGGE 225
Query: 248 KEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFP 307
K +ACG+ H++ + +G L + G + YGQLG + + P
Sbjct: 226 KMSM-----------------VACGWRHTISVSYSGALYTYGWSKYGQLGHGDLEDHLIP 268
Query: 308 VDI----NFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLG 354
+ N IS G H++A+ + WGWN+ Q+G
Sbjct: 269 HKLEALSNSFISQISGGWRHTMALTSDGK---------LYGWGWNKFGQVG 310
Score = 77.4 bits (189), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 61/194 (31%), Positives = 96/194 (49%), Gaps = 17/194 (8%)
Query: 32 FGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTS-VSAGHYHSLAVTNNGAVWAWGR 90
+G G G LGL G D P RV + S V+ G H+++V+ +GA++ +G
Sbjct: 197 WGWGRYGNLGL-----GDRTDRLVPERVTSTGGEKMSMVACGWRHTISVSYSGALYTYGW 251
Query: 91 NNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQ 150
+ QLG G LE P ++E L + + A+ DG L+ WG +K GQ
Sbjct: 252 SKYGQLGHGDLEDHLI---PHKLEALSNSFISQISGGWRHTMALTSDGKLYGWGWNKFGQ 308
Query: 151 LGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIG----- 205
+G+G ++ + P +V +K+V+VS GW H LA TE +F WG +G++G
Sbjct: 309 VGVGNNLDQC-SPVQVRFPDDQKVVQVSCGWRHTLAVTERNNVFAWGRGTNGQLGIGESV 367
Query: 206 --NLGKALESSPLD 217
N K +E+ +D
Sbjct: 368 DRNFPKIIEALSVD 381
Score = 36.6 bits (83), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 55/117 (47%), Gaps = 16/117 (13%)
Query: 261 VEGVEVVDIACGFDHSLVLGRNGV-LLSCGSNVYGQLGREKQDMGMFPVDIN-FHPV--- 315
++G ++V + CG DH++ ++G+ + S G +G+LG P+ I H +
Sbjct: 65 LDGHQIVSVTCGADHTVAYSQSGMEVYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIK 124
Query: 316 SISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPDN--VPLVVEGLEG 370
I+ G H LA+ + SWG N++ QLG ++ VP ++ EG
Sbjct: 125 QIACGDSHCLAVTMEGE---------VQSWGRNQNGQLGLGDTEDSLVPQKIQAFEG 172
Score = 32.0 bits (71), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 48/115 (41%), Gaps = 20/115 (17%)
Query: 265 EVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDIN----FHPVSISSG 320
+V+ I+ G HS+ L ++ S G GQLG + P ++ VS++ G
Sbjct: 17 KVLIISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCG 76
Query: 321 LGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPDN-----VPLVVEGLEG 370
H++A + + SWGW GR+G N PL ++ L G
Sbjct: 77 ADHTVAYSQ--------SGMEVYSWGWG---DFGRLGHGNSSDLFTPLPIKALHG 120
>pdb|4DNU|A Chain A, Crystal Structure Of The W285a Mutant Of Uvb-Resistance
Protein Uvr8
Length = 372
Score = 103 bits (258), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 96/353 (27%), Positives = 149/353 (42%), Gaps = 65/353 (18%)
Query: 23 SASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPS-DVTSVSAGHYHSLAVTN 81
S SG V S+G G G LG G D + P + L + ++ G H LAVT
Sbjct: 74 SQSGXEVYSWGWGDFGRLG-----HGNSSDLFTPLPIKALHGIRIKQIACGDSHCLAVTX 128
Query: 82 NGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLW 141
G V +WGRN QLG G E P++++ + + + A ++A+ +DG L+
Sbjct: 129 EGEVQSWGRNQNGQLGLGDTEDSLV---PQKIQAFEGIRIKXVAAGAEHTAAVTEDGDLY 185
Query: 142 VWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSAD 201
WG + G LGLG D T+ +VP RV + GEK V+ GW H ++ + G L+ +G+S
Sbjct: 186 GWGWGRYGNLGLG-DRTDRLVPERVTSTGGEKXSXVACGWRHTISVSYSGALYTYGWSKY 244
Query: 202 GRIGNLGKALESSPLDSNXXXXXXXXXXXXXXXXXKAQKLVSEGMEKEKYMPIIWEPFLV 261
G++G+ G ++ +P E +
Sbjct: 245 GQLGH--------------------------------------GDLEDHLIPHKLEA--L 264
Query: 262 EGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINF----HPVSI 317
+ I+ G H+ L +G L G N +GQ+G PV + F V +
Sbjct: 265 SNSFISQISGGARHTXALTSDGKLYGWGWNKFGQVGVGNNLDQCSPVQVRFPDDQKVVQV 324
Query: 318 SSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQL--GRMGPDNVPLVVEGL 368
S G H+LA+ E + + +WG + QL G N P ++E L
Sbjct: 325 SCGWRHTLAVTERNN---------VFAWGRGTNGQLGIGESVDRNFPKIIEAL 368
Score = 88.2 bits (217), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 87/350 (24%), Positives = 134/350 (38%), Gaps = 104/350 (29%)
Query: 59 VPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRAT------------ 106
V P V +SAG HS+A+ + V +WGR + QLG G E R +
Sbjct: 1 VTAPPRKVLIISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQI 60
Query: 107 ------------------------WND--------------PKRVEGLDQVNVCAAFASG 128
W D P ++ L + +
Sbjct: 61 VSVTCGADHTVAYSQSGXEVYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIACGD 120
Query: 129 VVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQT 188
A+ +G + WG+++ GQLGLG D +++VP +++A G +I V+ G H A T
Sbjct: 121 SHCLAVTXEGEVQSWGRNQNGQLGLG-DTEDSLVPQKIQAFEGIRIKXVAAGAEHTAAVT 179
Query: 189 EDGKLFGWGYSADGRIGNLGKALESSPLDSNXXXXXXXXXXXXXXXXXKAQKLVSEGMEK 248
EDG L+GWG+ GR GNLG + L +++ S G EK
Sbjct: 180 EDGDLYGWGW---GRYGNLGLGDRTDRL--------------------VPERVTSTGGEK 216
Query: 249 EKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPV 308
+ACG+ H++ + +G L + G + YGQLG + + P
Sbjct: 217 XSX-----------------VACGWRHTISVSYSGALYTYGWSKYGQLGHGDLEDHLIPH 259
Query: 309 DI----NFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLG 354
+ N IS G H+ A+ + WGWN+ Q+G
Sbjct: 260 KLEALSNSFISQISGGARHTXALTSDGK---------LYGWGWNKFGQVG 300
Score = 79.0 bits (193), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 61/194 (31%), Positives = 96/194 (49%), Gaps = 17/194 (8%)
Query: 32 FGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTS-VSAGHYHSLAVTNNGAVWAWGR 90
+G G G LGL G D P RV + S V+ G H+++V+ +GA++ +G
Sbjct: 187 WGWGRYGNLGL-----GDRTDRLVPERVTSTGGEKXSXVACGWRHTISVSYSGALYTYGW 241
Query: 91 NNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQ 150
+ QLG G LE P ++E L + + A+ DG L+ WG +K GQ
Sbjct: 242 SKYGQLGHGDLEDHLI---PHKLEALSNSFISQISGGARHTXALTSDGKLYGWGWNKFGQ 298
Query: 151 LGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIG----- 205
+G+G ++ + P +V +K+V+VS GW H LA TE +F WG +G++G
Sbjct: 299 VGVGNNLDQC-SPVQVRFPDDQKVVQVSCGWRHTLAVTERNNVFAWGRGTNGQLGIGESV 357
Query: 206 --NLGKALESSPLD 217
N K +E+ +D
Sbjct: 358 DRNFPKIIEALSVD 371
Score = 36.6 bits (83), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 54/117 (46%), Gaps = 16/117 (13%)
Query: 261 VEGVEVVDIACGFDHSLVLGRNGV-LLSCGSNVYGQLGREKQDMGMFPVDIN-FHPV--- 315
++G ++V + CG DH++ ++G + S G +G+LG P+ I H +
Sbjct: 55 LDGHQIVSVTCGADHTVAYSQSGXEVYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIK 114
Query: 316 SISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPDN--VPLVVEGLEG 370
I+ G H LA+ + SWG N++ QLG ++ VP ++ EG
Sbjct: 115 QIACGDSHCLAVTXEGE---------VQSWGRNQNGQLGLGDTEDSLVPQKIQAFEG 162
Score = 32.0 bits (71), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 48/115 (41%), Gaps = 20/115 (17%)
Query: 265 EVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDIN----FHPVSISSG 320
+V+ I+ G HS+ L ++ S G GQLG + P ++ VS++ G
Sbjct: 7 KVLIISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCG 66
Query: 321 LGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPDN-----VPLVVEGLEG 370
H++A + + SWGW GR+G N PL ++ L G
Sbjct: 67 ADHTVAYSQSGXE--------VYSWGWG---DFGRLGHGNSSDLFTPLPIKALHG 110
>pdb|3KCI|A Chain A, The Third Rld Domain Of Herc2
Length = 389
Score = 83.2 bits (204), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 80/312 (25%), Positives = 137/312 (43%), Gaps = 61/312 (19%)
Query: 68 SVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFAS 127
+V++G H LA+++ G V++WG + +LG G +R+ + P+ +E L + V A
Sbjct: 111 AVNSGGKHCLALSSEGEVYSWGEAEDGKLGHG---NRSPCDRPRVIESLRGIEVVDVAAG 167
Query: 128 GVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHA--L 185
G S+ + G L+ WGK + G+LG D + + P VEAL G ++V ++ G G A L
Sbjct: 168 GAHSACVTAAGDLYTWGKGRYGRLGH-SDSEDQLKPKLVEALQGHRVVDIACGSGDAQTL 226
Query: 186 AQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNXXXXXXXXXXXXXXXXXKAQKLVSEG 245
T+D ++ WG DG G LG+ S+G
Sbjct: 227 CLTDDDTVWSWG---DGDYGKLGRG-------------------------------GSDG 252
Query: 246 MEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGM 305
+ +P+ + G+ VV + CG S+ L ++G + + G Y +LG D
Sbjct: 253 CK----VPMKIDSLT--GLGVVKVECGSQFSVALTKSGAVYTWGKGDYHRLGHGSDDHVR 306
Query: 306 FPVDIN----FHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPDNV 361
P + ++I++G H + E + +WG N QLG + +
Sbjct: 307 RPRQVQGLQGKKVIAIATGSLHCVCCTEDGE---------VYTWGDNDEGQLGDGTTNAI 357
Query: 362 --PLVVEGLEGE 371
P +V L+G+
Sbjct: 358 QRPRLVAALQGK 369
Score = 72.0 bits (175), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 49/181 (27%), Positives = 88/181 (48%), Gaps = 12/181 (6%)
Query: 29 VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVT---SVSAGHYHSLAVTNNGAV 85
+ ++G G G LG S D +P V L + +G +L +T++ V
Sbjct: 180 LYTWGKGRYGRLGHSDSE-----DQLKPKLVEALQGHRVVDIACGSGDAQTLCLTDDDTV 234
Query: 86 WAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGK 145
W+WG + +LGRG + P +++ L + V S A+ G+++ WGK
Sbjct: 235 WSWGDGDYGKLGRGGSDGCKV---PMKIDSLTGLGVVKVECGSQFSVALTKSGAVYTWGK 291
Query: 146 SKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIG 205
+LG G D P +V+ L G+K++ ++ G H + TEDG+++ WG + +G++G
Sbjct: 292 GDYHRLGHGSD-DHVRRPRQVQGLQGKKVIAIATGSLHCVCCTEDGEVYTWGDNDEGQLG 350
Query: 206 N 206
+
Sbjct: 351 D 351
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 55/161 (34%), Positives = 80/161 (49%), Gaps = 14/161 (8%)
Query: 29 VVSFGDGSQGALGLPTSLTGVGGDAYE-PTRVPGLPS-DVTSVSAGHYHSLAVTNNGAVW 86
V S+GDG G LG G D + P ++ L V V G S+A+T +GAV+
Sbjct: 234 VWSWGDGDYGKLGRG------GSDGCKVPMKIDSLTGLGVVKVECGSQFSVALTKSGAVY 287
Query: 87 AWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKS 146
WG+ + +LG G+ + P++V+GL V A + +DG ++ WG +
Sbjct: 288 TWGKGDYHRLGHGSDDHV---RRPRQVQGLQGKKVIAIATGSLHCVCCTEDGEVYTWGDN 344
Query: 147 KRGQLGLGKDITEAIV-PSRVEALAGEKIVKVSFGWGHALA 186
GQLG G T AI P V AL G+K+ +V+ G H LA
Sbjct: 345 DEGQLGDG--TTNAIQRPRLVAALQGKKVNRVACGSAHTLA 383
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 83/304 (27%), Positives = 129/304 (42%), Gaps = 61/304 (20%)
Query: 77 LAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNV--CAAFASGVVSSAI 134
AVT +G ++A G +LG G ES +T P +E + V + A + G A+
Sbjct: 66 FAVTADGKLYATGYGAGGRLGIGGTESVST---PTLLESIQHVFIKKVAVNSGGKHCLAL 122
Query: 135 GDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLF 194
+G ++ WG+++ G+LG G + + P +E+L G ++V V+ G H+ T G L+
Sbjct: 123 SSEGEVYSWGEAEDGKLGHG-NRSPCDRPRVIESLRGIEVVDVAAGGAHSACVTAAGDLY 181
Query: 195 GWGYSADGRIGNLGKALESSPLDSNXXXXXXXXXXXXXXXXXKAQKLVSEGMEKEKYMPI 254
WG GR G LG + L
Sbjct: 182 TWG---KGRYGRLGHSDSEDQL-------------------------------------- 200
Query: 255 IWEPFLVEGVE---VVDIACGF--DHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVD 309
+P LVE ++ VVDIACG +L L + + S G YG+LGR D P+
Sbjct: 201 --KPKLVEALQGHRVVDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMK 258
Query: 310 INFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPDNV--PLVVEG 367
I+ +GLG C + S + + +WG +LG D+V P V+G
Sbjct: 259 IDS-----LTGLGVVKVECGSQFSVALTKSGAVYTWGKGDYHRLGHGSDDHVRRPRQVQG 313
Query: 368 LEGE 371
L+G+
Sbjct: 314 LQGK 317
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 77/304 (25%), Positives = 119/304 (39%), Gaps = 61/304 (20%)
Query: 76 SLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIG 135
+L +G ++ WG N+ QL G +E A P E L + A+
Sbjct: 13 NLYFQGSGTIYGWGHNHRGQL--GGIEG-AKVKVPTPCEALATLRPVQLIGGEQTLFAVT 69
Query: 136 DDGSLWVWGKSKRGQLGLGKDITEAI-VPSRVEALAGEKIVKVSFGWG--HALAQTEDGK 192
DG L+ G LG TE++ P+ +E++ I KV+ G H LA + +G+
Sbjct: 70 ADGKLYATGYGA--GGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGE 127
Query: 193 LFGWGYSADGRIGNLGKALESSPLDSNXXXXXXXXXXXXXXXXXKAQKLVSEGMEKEKYM 252
++ WG + DG++G+ + SP D
Sbjct: 128 VYSWGEAEDGKLGHGNR----SPCD----------------------------------R 149
Query: 253 PIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDIN- 311
P + E G+EVVD+A G HS + G L + G YG+LG + + P +
Sbjct: 150 PRVIESL--RGIEVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEA 207
Query: 312 ---FHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPD--NVPLVVE 366
V I+ G G + +C V SWG +LGR G D VP+ ++
Sbjct: 208 LQGHRVVDIACGSGDAQTLCLTDDDTV-------WSWGDGDYGKLGRGGSDGCKVPMKID 260
Query: 367 GLEG 370
L G
Sbjct: 261 SLTG 264
Score = 37.7 bits (86), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 35/73 (47%), Gaps = 6/73 (8%)
Query: 28 AVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLP-SDVTSVSAGHYHSLAVTNNGAVW 86
AV ++G G LG G P +V GL V +++ G H + T +G V+
Sbjct: 285 AVYTWGKGDYHRLG-----HGSDDHVRRPRQVQGLQGKKVIAIATGSLHCVCCTEDGEVY 339
Query: 87 AWGRNNEVQLGRG 99
WG N+E QLG G
Sbjct: 340 TWGDNDEGQLGDG 352
>pdb|1I2M|B Chain B, Ran-Rcc1-So4 Complex
pdb|1I2M|D Chain D, Ran-Rcc1-So4 Complex
Length = 402
Score = 68.2 bits (165), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 53/181 (29%), Positives = 96/181 (53%), Gaps = 12/181 (6%)
Query: 29 VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAW 88
V++ G G G LGL ++ + +P V +P DV AG H++ ++ +G V+++
Sbjct: 18 VLTLGQGDVGQLGLGENVM----ERKKPALVS-IPEDVVQAEAGGMHTVCLSKSGQVYSF 72
Query: 89 GRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWG--KS 146
G N+E LGR + P +VE ++V +A S ++A+ DDG +++WG +
Sbjct: 73 GCNDEGALGRDT-SVEGSEMVPGKVELQEKVVQVSAGDSH--TAALTDDGRVFLWGSFRD 129
Query: 147 KRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGN 206
G +GL + + +++VP +V+ +VKV+ G H + T DG L+ G G++G
Sbjct: 130 NNGVIGLLEPMKKSMVPVQVQLDV--PVVKVASGNDHLVMLTADGDLYTLGCGEQGQLGR 187
Query: 207 L 207
+
Sbjct: 188 V 188
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 53/203 (26%), Positives = 89/203 (43%), Gaps = 20/203 (9%)
Query: 18 RIFMRSASGTAVVSFGDGSQGALG-LPTSLTGVGG-DAYEPTRVPGLPSDVTSVSAGH-- 73
+ M +A G + + G G QG LG +P GG E VP + S GH
Sbjct: 164 HLVMLTADGD-LYTLGCGEQGQLGRVPELFANRGGRQGLERLLVPKCVMLKSRGSRGHVR 222
Query: 74 --------YHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGL-DQVNVCAA 124
Y + A+++ G V+ +G +N QLG ES P+ + +
Sbjct: 223 FQDAFCGAYFTFAISHEGHVYGFGLSNYHQLGTPGTESCFI---PQNLTSFKNSTKSWVG 279
Query: 125 FASGVVSSAIGD-DGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGH 183
F+ G + D +G + G+++ G+LGLG+ E +P+ + L + V+ G
Sbjct: 280 FSGGQHHTVCMDSEGKAYSLGRAEYGRLGLGEGAEEKSIPTLISRLPA--VSSVACGASV 337
Query: 184 ALAQTEDGKLFGWGYSADGRIGN 206
A T+DG++F WG + ++G
Sbjct: 338 GYAVTKDGRVFAWGMGTNYQLGT 360
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 79/194 (40%), Gaps = 27/194 (13%)
Query: 19 IFMRSASGTAVVSFGDGSQGA-----LGLPTSLTGVGGDAYEPTRVPG-----LPSDVTS 68
+ ++S V F D GA + + G G Y PG +P ++TS
Sbjct: 210 VMLKSRGSRGHVRFQDAFCGAYFTFAISHEGHVYGFGLSNYHQLGTPGTESCFIPQNLTS 269
Query: 69 V----------SAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQ 118
S G +H++ + + G ++ GR +LG G E + P + L
Sbjct: 270 FKNSTKSWVGFSGGQHHTVCMDSEGKAYSLGRAEYGRLGLG--EGAEEKSIPTLISRLPA 327
Query: 119 VNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRV--EALAGEKIVK 176
V+ A AS V A+ DG ++ WG QLG G+D +A P + + L ++
Sbjct: 328 VSSVACGAS--VGYAVTKDGRVFAWGMGTNYQLGTGQD-EDAWSPVEMMGKQLENRVVLS 384
Query: 177 VSFGWGHALAQTED 190
VS G H + +D
Sbjct: 385 VSSGGQHTVLLVKD 398
Score = 35.8 bits (81), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 44/182 (24%), Positives = 75/182 (41%), Gaps = 27/182 (14%)
Query: 136 DDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFG 195
+ G + G+ GQLGLG+++ E P+ V E +V+ G H + ++ G+++
Sbjct: 14 EPGLVLTLGQGDVGQLGLGENVMERKKPALVS--IPEDVVQAEAGGMHTVCLSKSGQVYS 71
Query: 196 WGYSADGRIGN----------------LGKALESSPLDSNXXXXXXXXXXXXXXXXXKAQ 239
+G + +G +G K ++ S DS+
Sbjct: 72 FGCNDEGALGRDTSVEGSEMVPGKVELQEKVVQVSAGDSHTAALTDDGRVFLWGSFRDNN 131
Query: 240 KLVS--EGMEKEKYMPIIWEPFLVE-GVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQL 296
++ E M+K P V+ V VV +A G DH ++L +G L + G GQL
Sbjct: 132 GVIGLLEPMKKSMV------PVQVQLDVPVVKVASGNDHLVMLTADGDLYTLGCGEQGQL 185
Query: 297 GR 298
GR
Sbjct: 186 GR 187
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 36/69 (52%), Gaps = 4/69 (5%)
Query: 265 EVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMG--MFP--VDINFHPVSISSG 320
+VV G H++ L ++G + S G N G LGR+ G M P V++ V +S+G
Sbjct: 49 DVVQAEAGGMHTVCLSKSGQVYSFGCNDEGALGRDTSVEGSEMVPGKVELQEKVVQVSAG 108
Query: 321 LGHSLAICE 329
H+ A+ +
Sbjct: 109 DSHTAALTD 117
>pdb|1A12|A Chain A, Regulator Of Chromosome Condensation (Rcc1) Of Human
pdb|1A12|B Chain B, Regulator Of Chromosome Condensation (Rcc1) Of Human
pdb|1A12|C Chain C, Regulator Of Chromosome Condensation (Rcc1) Of Human
Length = 413
Score = 67.8 bits (164), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 53/181 (29%), Positives = 96/181 (53%), Gaps = 12/181 (6%)
Query: 29 VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAW 88
V++ G G G LGL ++ + +P V +P DV AG H++ ++ +G V+++
Sbjct: 29 VLTLGQGDVGQLGLGENVM----ERKKPALV-SIPEDVVQAEAGGMHTVCLSKSGQVYSF 83
Query: 89 GRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWG--KS 146
G N+E LGR + P +VE ++V +A S ++A+ DDG +++WG +
Sbjct: 84 GCNDEGALGRDT-SVEGSEMVPGKVELQEKVVQVSAGDSH--TAALTDDGRVFLWGSFRD 140
Query: 147 KRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGN 206
G +GL + + +++VP +V+ +VKV+ G H + T DG L+ G G++G
Sbjct: 141 NNGVIGLLEPMKKSMVPVQVQLDV--PVVKVASGNDHLVMLTADGDLYTLGCGEQGQLGR 198
Query: 207 L 207
+
Sbjct: 199 V 199
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 53/203 (26%), Positives = 89/203 (43%), Gaps = 20/203 (9%)
Query: 18 RIFMRSASGTAVVSFGDGSQGALG-LPTSLTGVGG-DAYEPTRVPGLPSDVTSVSAGH-- 73
+ M +A G + + G G QG LG +P GG E VP + S GH
Sbjct: 175 HLVMLTADGD-LYTLGCGEQGQLGRVPELFANRGGRQGLERLLVPKCVMLKSRGSRGHVR 233
Query: 74 --------YHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGL-DQVNVCAA 124
Y + A+++ G V+ +G +N QLG ES P+ + +
Sbjct: 234 FQDAFCGAYFTFAISHEGHVYGFGLSNYHQLGTPGTESCFI---PQNLTSFKNSTKSWVG 290
Query: 125 FASGVVSSAIGD-DGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGH 183
F+ G + D +G + G+++ G+LGLG+ E +P+ + L + V+ G
Sbjct: 291 FSGGQHHTVCMDSEGKAYSLGRAEYGRLGLGEGAEEKSIPTLISRLPA--VSSVACGASV 348
Query: 184 ALAQTEDGKLFGWGYSADGRIGN 206
A T+DG++F WG + ++G
Sbjct: 349 GYAVTKDGRVFAWGMGTNYQLGT 371
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 79/194 (40%), Gaps = 27/194 (13%)
Query: 19 IFMRSASGTAVVSFGDGSQGA-----LGLPTSLTGVGGDAYEPTRVPG-----LPSDVTS 68
+ ++S V F D GA + + G G Y PG +P ++TS
Sbjct: 221 VMLKSRGSRGHVRFQDAFCGAYFTFAISHEGHVYGFGLSNYHQLGTPGTESCFIPQNLTS 280
Query: 69 V----------SAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQ 118
S G +H++ + + G ++ GR +LG G E + P + L
Sbjct: 281 FKNSTKSWVGFSGGQHHTVCMDSEGKAYSLGRAEYGRLGLG--EGAEEKSIPTLISRLPA 338
Query: 119 VNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRV--EALAGEKIVK 176
V+ A AS V A+ DG ++ WG QLG G+D +A P + + L ++
Sbjct: 339 VSSVACGAS--VGYAVTKDGRVFAWGMGTNYQLGTGQD-EDAWSPVEMMGKQLENRVVLS 395
Query: 177 VSFGWGHALAQTED 190
VS G H + +D
Sbjct: 396 VSSGGQHTVLLVKD 409
Score = 36.2 bits (82), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 44/182 (24%), Positives = 75/182 (41%), Gaps = 27/182 (14%)
Query: 136 DDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFG 195
+ G + G+ GQLGLG+++ E P+ V E +V+ G H + ++ G+++
Sbjct: 25 EPGLVLTLGQGDVGQLGLGENVMERKKPALVS--IPEDVVQAEAGGMHTVCLSKSGQVYS 82
Query: 196 WGYSADGRIGN----------------LGKALESSPLDSNXXXXXXXXXXXXXXXXXKAQ 239
+G + +G +G K ++ S DS+
Sbjct: 83 FGCNDEGALGRDTSVEGSEMVPGKVELQEKVVQVSAGDSHTAALTDDGRVFLWGSFRDNN 142
Query: 240 KLVS--EGMEKEKYMPIIWEPFLVE-GVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQL 296
++ E M+K P V+ V VV +A G DH ++L +G L + G GQL
Sbjct: 143 GVIGLLEPMKKSMV------PVQVQLDVPVVKVASGNDHLVMLTADGDLYTLGCGEQGQL 196
Query: 297 GR 298
GR
Sbjct: 197 GR 198
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 44/89 (49%), Gaps = 12/89 (13%)
Query: 246 MEKEKYMPIIWEPFLVEGVE-VVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMG 304
ME++K P LV E VV G H++ L ++G + S G N G LGR+ G
Sbjct: 47 MERKK-------PALVSIPEDVVQAEAGGMHTVCLSKSGQVYSFGCNDEGALGRDTSVEG 99
Query: 305 --MFP--VDINFHPVSISSGLGHSLAICE 329
M P V++ V +S+G H+ A+ +
Sbjct: 100 SEMVPGKVELQEKVVQVSAGDSHTAALTD 128
>pdb|3OF7|A Chain A, The Crystal Structure Of Prp20p From Saccharomyces
Cerevisiae And Its Binding Properties To Gsp1p And
Histones
Length = 473
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 96/400 (24%), Positives = 152/400 (38%), Gaps = 87/400 (21%)
Query: 29 VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSD---VTSVSAGHYHSLAVTNNGAV 85
+ +G GS LGL + P P LP D + S + G H+LA+ V
Sbjct: 31 IFCWGTGSMCELGL--GPLAKNKEVKRPRLNPFLPRDEAKIISFAVGGMHTLALDEESNV 88
Query: 86 WAWGRNNEVQLGRGALESRATWND-----------------------------PKRVEGL 116
W+WG N+ LGR ++ D P EG
Sbjct: 89 WSWGCNDVGALGRDTSNAKEQLKDMDADDSSDDEDGDLNELESTPAKIPRESFPPLAEGH 148
Query: 117 DQVNVCAAFASGVVSSAIGDDGSLWVWG--KSKRGQLGLGKD-ITEAIVPSRVEALAGEK 173
V + A+ +S A+ +G ++ WG + G LG +D I P +V +
Sbjct: 149 KVVQLA---ATDNMSCALFSNGEVYAWGTFRCNEGILGFYQDKIKIQKTPWKVPTFSKYN 205
Query: 174 IVKVSFGWGHALAQTEDGKLFGWGYSADGRIGN------LGKALESSPLDSNXXXXXXXX 227
IV+++ G H L E+G +F WG ++G K L+ P
Sbjct: 206 IVQLAPGKDHILFLDEEGMVFAWGNGQQNQLGRKVMERFRLKTLDPRPFGLR-HVKYIAS 264
Query: 228 XXXXXXXXXKAQKLVSEGM---------EKEKYMPIIWEP---FLVEGVEVVDIACGFDH 275
K KLVS G+ E + ++ +P L + V + IA G H
Sbjct: 265 GENHCFALTKDNKLVSWGLNQFGQCGVSEDVEDGALVTKPKRLALPDNVVIRSIAAGEHH 324
Query: 276 SLVLGRNGVLLSCGSNVYGQLGREKQDMGMF--------------PVDINFHP--VSISS 319
SL+L ++G L SCG ++G K ++ + P +N P S+++
Sbjct: 325 SLILSQDGDLYSCGRLDMFEVGIPKDNLPEYTYKDVHGKARAVPLPTKLNNVPKFKSVAA 384
Query: 320 GLGHSLAICEVRSSNVTGGARGIV-SWGWNRSSQLGRMGP 358
G HS+A+ + GI SWG+ + +G +GP
Sbjct: 385 GSHHSVAVAQ----------NGIAYSWGFGETYAVG-LGP 413
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 46/188 (24%), Positives = 84/188 (44%), Gaps = 29/188 (15%)
Query: 1 MRLLKSVV--HNHVNVLTSRIFMRSASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTR 58
+R +K + NH LT +VS+G G G+ + G +P R
Sbjct: 256 LRHVKYIASGENHCFALTK--------DNKLVSWGLNQFGQCGVSEDVED-GALVTKPKR 306
Query: 59 VPGLPSDVT--SVSAGHYHSLAVTNNGAVWAWGRNN--EVQLGRGALESRATWND----- 109
+ LP +V S++AG +HSL ++ +G +++ GR + EV + + L T+ D
Sbjct: 307 L-ALPDNVVIRSIAAGEHHSLILSQDGDLYSCGRLDMFEVGIPKDNL-PEYTYKDVHGKA 364
Query: 110 -----PKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPS 164
P ++ + + AA + V A+ +G + WG + +GLG + VP+
Sbjct: 365 RAVPLPTKLNNVPKFKSVAAGSHHSV--AVAQNGIAYSWGFGETYAVGLGPFEDDTEVPT 422
Query: 165 RVEALAGE 172
R++ A +
Sbjct: 423 RIKNTATQ 430
>pdb|3MVD|K Chain K, Crystal Structure Of The Chromatin Factor Rcc1 In Complex
With The Nucleosome Core Particle
pdb|3MVD|L Chain L, Crystal Structure Of The Chromatin Factor Rcc1 In Complex
With The Nucleosome Core Particle
Length = 423
Score = 58.5 bits (140), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 53/184 (28%), Positives = 90/184 (48%), Gaps = 19/184 (10%)
Query: 29 VVSFGDGSQGALGLPTSLTGVGGDAYEPTR---VPGLPSDVTSVSAGHYHSLAVTNNGAV 85
V+ G+G G LGL G D E R V G+P D +SAG H+L +T +G +
Sbjct: 45 VLVCGNGDVGQLGL-------GEDILERKRLSPVAGIP-DAVDISAGGMHNLVLTKSGDI 96
Query: 86 WAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWG- 144
+++G N+E LGR E + + P ++ L +C + A S+ + +DG ++ WG
Sbjct: 97 YSFGCNDEGALGRDTSED-GSESKPDLID-LPGKALCIS-AGDSHSACLLEDGRVFAWGS 153
Query: 145 -KSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGR 203
+ G +GL D + + ++ + G ++ G H + T GK+F G + G+
Sbjct: 154 FRDSHGNMGLTIDGNKR---TPIDLMEGTVCCSIASGADHLVILTTAGKVFTVGCAEQGQ 210
Query: 204 IGNL 207
+G L
Sbjct: 211 LGRL 214
Score = 48.1 bits (113), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 51/178 (28%), Positives = 74/178 (41%), Gaps = 24/178 (13%)
Query: 138 GSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAG-EKIVKVSFGWGHALAQTEDGKLFGW 196
G++ V G GQLGLG+DI E R+ +AG V +S G H L T+ G ++ +
Sbjct: 43 GNVLVCGNGDVGQLGLGEDILER---KRLSPVAGIPDAVDISAGGMHNLVLTKSGDIYSF 99
Query: 197 GYSADGRIGN----------------LGKALESSPLDSNXXXXXXXXXXXXXXXXXKAQK 240
G + +G +G GKAL S DS+ +
Sbjct: 100 GCNDEGALGRDTSEDGSESKPDLIDLPGKALCISAGDSHSACLLEDGRVFAWGSFRDSHG 159
Query: 241 LVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGR 298
+ ++ K PI L+EG IA G DH ++L G + + G GQLGR
Sbjct: 160 NMGLTIDGNKRTPI----DLMEGTVCCSIASGADHLVILTTAGKVFTVGCAEQGQLGR 213
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 53/188 (28%), Positives = 80/188 (42%), Gaps = 19/188 (10%)
Query: 29 VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTN------- 81
V + G QG LG S + G+ R P+ + A + ++ TN
Sbjct: 200 VFTVGCAEQGQLGR-LSERSISGEGRRGKRDLLRPTQLIITRAKPFEAIWATNYCTFMRE 258
Query: 82 --NGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGS 139
+WA G NN QL + + P + E D ++ V+ + D
Sbjct: 259 SQTQVIWATGLNNFKQLAH-ETKGKEFALTPIKTELKDIRHIAGGQHHTVILTT---DLK 314
Query: 140 LWVWGKSKRGQLGLG--KDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWG 197
V G+ + G+LGLG KD+ E P+ V+ L EKIV V G + A T DGKL+ WG
Sbjct: 315 CSVVGRPEYGRLGLGDVKDVVEK--PTIVKKLT-EKIVSVGCGEVCSYAVTIDGKLYSWG 371
Query: 198 YSADGRIG 205
+ ++G
Sbjct: 372 SGVNNQLG 379
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 54/116 (46%), Gaps = 20/116 (17%)
Query: 246 MEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGM 305
+E+++ P+ P + VDI+ G H+LVL ++G + S G N G LGR+ + G
Sbjct: 63 LERKRLSPVAGIP------DAVDISAGGMHNLVLTKSGDIYSFGCNDEGALGRDTSEDGS 116
Query: 306 FP----VDINFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMG 357
+D+ + IS+G HS + E + +WG R S G MG
Sbjct: 117 ESKPDLIDLPGKALCISAGDSHSACLLEDGR---------VFAWGSFRDSH-GNMG 162
Score = 36.2 bits (82), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 70/168 (41%), Gaps = 11/168 (6%)
Query: 20 FMRSASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAV 79
FMR + + + G + L T G + T + D+ ++ G +H++ +
Sbjct: 255 FMRESQTQVIWATGLNNFKQLAHETK-----GKEFALTPIKTELKDIRHIAGGQHHTVIL 309
Query: 80 TNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGS 139
T + GR +LG G + + P V+ L + + + V S A+ DG
Sbjct: 310 TTDLKCSVVGRPEYGRLGLG--DVKDVVEKPTIVKKLTE-KIVSVGCGEVCSYAVTIDGK 366
Query: 140 LWVWGKSKRGQLGL--GKDITEAIVPSRVEALAGEKIVKVSFGWGHAL 185
L+ WG QLG+ G D E IV + G+ ++ S G HA+
Sbjct: 367 LYSWGSGVNNQLGVGDGDDELEPIVVVS-KNTQGKHMLLASGGGQHAI 413
>pdb|3QHY|B Chain B, Structural, Thermodynamic And Kinetic Analysis Of The
Picomolar Binding Affinity Interaction Of The
Beta-Lactamase Inhibitor Protein- Ii (Blip-Ii) With
Class A Beta-Lactamases
pdb|3QI0|A Chain A, Structural, Thermodynamic And Kinetic Analysis Of The
Picomolar Binding Affinity Interaction Of The
Beta-Lactamase Inhibitor Protein- Ii (Blip-Ii) With
Class A Beta-Lactamases
pdb|3QI0|B Chain B, Structural, Thermodynamic And Kinetic Analysis Of The
Picomolar Binding Affinity Interaction Of The
Beta-Lactamase Inhibitor Protein- Ii (Blip-Ii) With
Class A Beta-Lactamases
pdb|3QI0|C Chain C, Structural, Thermodynamic And Kinetic Analysis Of The
Picomolar Binding Affinity Interaction Of The
Beta-Lactamase Inhibitor Protein- Ii (Blip-Ii) With
Class A Beta-Lactamases
pdb|3QI0|D Chain D, Structural, Thermodynamic And Kinetic Analysis Of The
Picomolar Binding Affinity Interaction Of The
Beta-Lactamase Inhibitor Protein- Ii (Blip-Ii) With
Class A Beta-Lactamases
pdb|3QI0|E Chain E, Structural, Thermodynamic And Kinetic Analysis Of The
Picomolar Binding Affinity Interaction Of The
Beta-Lactamase Inhibitor Protein- Ii (Blip-Ii) With
Class A Beta-Lactamases
pdb|3QI0|F Chain F, Structural, Thermodynamic And Kinetic Analysis Of The
Picomolar Binding Affinity Interaction Of The
Beta-Lactamase Inhibitor Protein- Ii (Blip-Ii) With
Class A Beta-Lactamases
Length = 282
Score = 33.1 bits (74), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 46/151 (30%), Positives = 69/151 (45%), Gaps = 32/151 (21%)
Query: 50 GGDAYEPTRVPG-LPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWN 108
G D+ T VP S VT++ G Y +LAV N G + AWG N G+ + + A
Sbjct: 126 GDDSDGQTTVPAEAQSGVTALDGGVYTALAVKNGGVI-AWGDN---YFGQTTVPAEAQ-- 179
Query: 109 DPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEA 168
G+D V A G+ S DG + WG ++ Q VP+ EA
Sbjct: 180 -----SGVDDV------AGGIFHSLALKDGKVIAWGDNRYKQT---------TVPT--EA 217
Query: 169 LAGEKIVKVSFGWGHALAQTEDGKLFGWGYS 199
L+G + ++ G ++LA ++GK+ WG S
Sbjct: 218 LSG--VSAIASGEWYSLA-LKNGKVIAWGSS 245
Score = 32.7 bits (73), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 78/312 (25%), Positives = 124/312 (39%), Gaps = 69/312 (22%)
Query: 44 TSLTGVGG--DAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGAL 101
TS+ GG D E T S V +++ G++H LA+ G V WG N QL A
Sbjct: 2 TSVVAWGGNNDWGEATVPAEAQSGVDAIAGGYFHGLAL-KGGKVLGWGANLNGQLTMPAA 60
Query: 102 ESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAI 161
G+D A A+G S DG + WG ++ GQ
Sbjct: 61 TQS----------GVD------AIAAGNYHSLALKDGEVIAWGGNEDGQT---------T 95
Query: 162 VPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALES-SPLDSNX 220
VP+ EA +G + +AL +DGK+ WG +DG+ +A + LD
Sbjct: 96 VPA--EARSGVDAIAAGAWASYAL---KDGKVIAWGDDSDGQTTVPAEAQSGVTALDGG- 149
Query: 221 XXXXXXXXXXXXXXXXKAQKLVSEGMEKEKYMPIIWEPFLVE-GVEVVDIACGFDHSLVL 279
K +++ G + Y P + GV+ D+A G HSL L
Sbjct: 150 ---------VYTALAVKNGGVIAWG---DNYFGQTTVPAEAQSGVD--DVAGGIFHSLAL 195
Query: 280 GRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFHPVSISSGLGHSLAICEVRSSNVTGGA 339
++G +++ G N Y Q P + +I+SG +SLA+ +
Sbjct: 196 -KDGKVIAWGDNRYKQT--------TVPTEALSGVSAIASGEWYSLALKNGK-------- 238
Query: 340 RGIVSWGWNRSS 351
+++WG +R++
Sbjct: 239 --VIAWGSSRTA 248
>pdb|1JTD|B Chain B, Crystal Structure Of Beta-Lactamase Inhibitor Protein-Ii
In Complex With Tem-1 Beta-Lactamase
Length = 273
Score = 33.1 bits (74), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 46/151 (30%), Positives = 69/151 (45%), Gaps = 32/151 (21%)
Query: 50 GGDAYEPTRVPG-LPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWN 108
G D+ T VP S VT++ G Y +LAV N G + AWG N G+ + + A
Sbjct: 128 GDDSDGQTTVPAEAQSGVTALDGGVYTALAVKNGGVI-AWGDN---YFGQTTVPAEAQ-- 181
Query: 109 DPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEA 168
G+D V A G+ S DG + WG ++ Q VP+ EA
Sbjct: 182 -----SGVDDV------AGGIFHSLALKDGKVIAWGDNRYKQT---------TVPT--EA 219
Query: 169 LAGEKIVKVSFGWGHALAQTEDGKLFGWGYS 199
L+G + ++ G ++LA ++GK+ WG S
Sbjct: 220 LSG--VSAIASGEWYSLA-LKNGKVIAWGSS 247
Score = 32.3 bits (72), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 44/87 (50%), Gaps = 17/87 (19%)
Query: 64 SDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCA 123
S V +++AG+YHSLA+ +G V AWG N + Q A E+R+ G+D
Sbjct: 65 SGVDAIAAGNYHSLAL-KDGEVIAWGGNEDGQTTVPA-EARS---------GVD------ 107
Query: 124 AFASGVVSSAIGDDGSLWVWGKSKRGQ 150
A A+G +S DG + WG GQ
Sbjct: 108 AIAAGAWASYALKDGKVIAWGDDSDGQ 134
Score = 32.3 bits (72), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 71/290 (24%), Positives = 116/290 (40%), Gaps = 67/290 (23%)
Query: 64 SDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCA 123
S V +++ G++H LA+ G V WG N QL A G+D
Sbjct: 26 SGVDAIAGGYFHGLAL-KGGKVLGWGANLNGQLTMPAATQS----------GVD------ 68
Query: 124 AFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGH 183
A A+G S DG + WG ++ GQ VP+ EA +G + +
Sbjct: 69 AIAAGNYHSLALKDGEVIAWGGNEDGQT---------TVPA--EARSGVDAIAAGAWASY 117
Query: 184 ALAQTEDGKLFGWGYSADGRIGNLGKALES-SPLDSNXXXXXXXXXXXXXXXXXKAQKLV 242
AL +DGK+ WG +DG+ +A + LD K ++
Sbjct: 118 AL---KDGKVIAWGDDSDGQTTVPAEAQSGVTALDGG----------VYTALAVKNGGVI 164
Query: 243 SEGMEKEKYMPIIWEPFLVE-GVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQ 301
+ G + Y P + GV+ D+A G HSL L ++G +++ G N Y Q
Sbjct: 165 AWG---DNYFGQTTVPAEAQSGVD--DVAGGIFHSLAL-KDGKVIAWGDNRYKQT----- 213
Query: 302 DMGMFPVDINFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSS 351
P + +I+SG +SLA+ + +++WG +R++
Sbjct: 214 ---TVPTEALSGVSAIASGEWYSLALKNGK----------VIAWGSSRTA 250
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.134 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,248,768
Number of Sequences: 62578
Number of extensions: 464215
Number of successful extensions: 1121
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 892
Number of HSP's gapped (non-prelim): 109
length of query: 372
length of database: 14,973,337
effective HSP length: 100
effective length of query: 272
effective length of database: 8,715,537
effective search space: 2370626064
effective search space used: 2370626064
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 52 (24.6 bits)