Query 042844
Match_columns 372
No_of_seqs 161 out of 1678
Neff 9.6
Searched_HMMs 46136
Date Fri Mar 29 10:08:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042844.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042844hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5184 ATS1 Alpha-tubulin sup 100.0 4.3E-47 9.3E-52 345.2 25.0 305 13-367 109-441 (476)
2 COG5184 ATS1 Alpha-tubulin sup 100.0 1.2E-44 2.6E-49 329.2 23.5 295 17-366 58-389 (476)
3 KOG1427 Uncharacterized conser 100.0 4.8E-40 1E-44 281.4 15.6 291 15-370 65-380 (443)
4 KOG1427 Uncharacterized conser 100.0 2.6E-37 5.6E-42 264.6 16.7 299 25-371 18-328 (443)
5 KOG0783 Uncharacterized conser 100.0 9.5E-28 2.1E-32 229.2 15.2 271 17-350 132-418 (1267)
6 KOG1428 Inhibitor of type V ad 99.9 2.1E-26 4.5E-31 227.9 20.7 315 13-368 484-871 (3738)
7 KOG0783 Uncharacterized conser 99.9 4.5E-25 9.7E-30 211.1 11.4 235 66-353 126-367 (1267)
8 KOG1428 Inhibitor of type V ad 99.8 3.4E-19 7.4E-24 177.5 15.6 181 15-209 576-856 (3738)
9 PF00415 RCC1: Regulator of ch 99.3 9.5E-12 2.1E-16 82.1 5.9 51 137-187 1-51 (51)
10 PF00415 RCC1: Regulator of ch 99.2 5.7E-12 1.2E-16 83.2 3.6 49 26-79 1-51 (51)
11 PF13540 RCC1_2: Regulator of 99.2 3.3E-11 7.1E-16 69.4 3.9 30 66-95 1-30 (30)
12 PF13540 RCC1_2: Regulator of 99.2 4.6E-11 9.9E-16 68.8 4.2 30 266-295 1-30 (30)
13 KOG0941 E3 ubiquitin protein l 99.0 9.4E-12 2E-16 121.5 -5.4 134 65-202 15-156 (850)
14 KOG0941 E3 ubiquitin protein l 99.0 6.7E-12 1.5E-16 122.5 -7.6 176 110-329 5-195 (850)
15 KOG3669 Uncharacterized conser 95.7 0.86 1.9E-05 44.3 16.3 108 71-196 190-299 (705)
16 KOG0291 WD40-repeat-containing 95.6 1.4 2.9E-05 44.4 17.7 241 9-356 299-558 (893)
17 KOG3669 Uncharacterized conser 94.4 0.62 1.3E-05 45.3 11.3 108 126-288 190-299 (705)
18 PF11725 AvrE: Pathogenicity f 94.0 0.38 8.2E-06 52.4 10.2 67 263-329 743-813 (1774)
19 KOG0943 Predicted ubiquitin-pr 93.6 0.0053 1.2E-07 63.4 -3.8 134 65-204 375-510 (3015)
20 KOG0315 G-protein beta subunit 92.3 7.5 0.00016 34.1 18.5 70 117-200 84-155 (311)
21 KOG1900 Nuclear pore complex, 91.2 5.8 0.00013 42.7 14.0 172 21-205 93-278 (1311)
22 KOG0943 Predicted ubiquitin-pr 89.0 0.07 1.5E-06 55.7 -1.6 127 117-292 372-506 (3015)
23 PF04841 Vps16_N: Vps16, N-ter 85.3 37 0.00079 32.7 19.2 70 64-144 81-153 (410)
24 PF07569 Hira: TUP1-like enhan 83.3 6.4 0.00014 34.3 7.8 32 62-93 11-42 (219)
25 PF07569 Hira: TUP1-like enhan 82.0 7.9 0.00017 33.7 7.9 35 258-292 7-41 (219)
26 smart00706 TECPR Beta propelle 81.3 3.9 8.4E-05 23.8 4.0 25 172-196 8-33 (35)
27 smart00706 TECPR Beta propelle 78.8 5 0.00011 23.3 3.9 25 64-88 8-33 (35)
28 PF11725 AvrE: Pathogenicity f 77.7 21 0.00047 39.7 10.6 109 113-283 697-815 (1774)
29 KOG0315 G-protein beta subunit 77.1 52 0.0011 29.1 13.7 62 127-200 135-198 (311)
30 PF04762 IKI3: IKI3 family; I 76.5 1.2E+02 0.0025 32.8 20.6 29 62-90 425-455 (928)
31 KOG0646 WD40 repeat protein [G 76.1 76 0.0017 30.5 13.0 29 172-200 278-308 (476)
32 COG4257 Vgb Streptogramin lyas 76.1 54 0.0012 29.5 11.0 140 16-196 62-205 (353)
33 PHA02713 hypothetical protein; 70.8 99 0.0022 31.1 13.2 17 75-91 344-360 (557)
34 COG4257 Vgb Streptogramin lyas 69.3 49 0.0011 29.8 9.1 59 127-199 62-123 (353)
35 PF10168 Nup88: Nuclear pore c 69.0 1.5E+02 0.0033 30.9 18.5 126 18-144 34-177 (717)
36 KOG4441 Proteins containing BT 68.1 1.4E+02 0.003 30.3 13.5 66 75-147 325-390 (571)
37 PHA02713 hypothetical protein; 66.6 64 0.0014 32.5 10.8 20 127-146 341-360 (557)
38 PF12341 DUF3639: Protein of u 64.2 22 0.00048 19.6 3.9 25 171-195 1-25 (27)
39 COG5308 NUP170 Nuclear pore co 64.1 74 0.0016 33.5 10.4 107 20-147 95-202 (1263)
40 PF06739 SBBP: Beta-propeller 63.7 8.7 0.00019 23.0 2.5 18 183-200 16-33 (38)
41 TIGR03300 assembly_YfgL outer 63.3 99 0.0022 29.0 11.1 17 182-198 321-337 (377)
42 PHA03098 kelch-like protein; P 59.7 1.9E+02 0.0041 28.7 13.4 15 21-35 289-303 (534)
43 PHA03098 kelch-like protein; P 58.9 97 0.0021 30.8 10.6 14 23-36 339-352 (534)
44 TIGR01063 gyrA DNA gyrase, A s 56.0 2.8E+02 0.006 29.5 18.5 73 121-198 539-619 (800)
45 KOG1408 WD40 repeat protein [F 54.1 2.3E+02 0.005 29.2 11.7 68 131-198 170-248 (1080)
46 KOG0646 WD40 repeat protein [G 51.6 2.3E+02 0.0051 27.4 18.5 100 62-182 80-185 (476)
47 TIGR03548 mutarot_permut cycli 50.8 2E+02 0.0043 26.3 12.0 16 131-146 165-180 (323)
48 KOG2280 Vacuolar assembly/sort 48.6 3.3E+02 0.0073 28.3 14.3 70 120-199 85-155 (829)
49 TIGR03300 assembly_YfgL outer 47.1 2.5E+02 0.0053 26.3 19.6 18 274-291 321-338 (377)
50 KOG1034 Transcriptional repres 46.8 54 0.0012 30.2 5.7 58 132-198 323-382 (385)
51 PLN03215 ascorbic acid mannose 46.2 84 0.0018 29.8 7.2 27 173-199 161-190 (373)
52 PF07250 Glyoxal_oxid_N: Glyox 46.2 1.2E+02 0.0026 26.9 7.8 120 13-147 67-190 (243)
53 PF01436 NHL: NHL repeat; Int 44.5 37 0.0008 18.5 2.9 18 75-92 5-22 (28)
54 PLN02153 epithiospecifier prot 44.4 2.6E+02 0.0057 25.8 15.2 16 183-198 307-322 (341)
55 PLN03215 ascorbic acid mannose 43.5 1E+02 0.0022 29.2 7.3 61 66-144 162-225 (373)
56 KOG1274 WD40 repeat protein [G 42.3 4.5E+02 0.0097 27.9 13.4 69 127-198 14-85 (933)
57 cd00200 WD40 WD40 domain, foun 41.6 2.2E+02 0.0047 24.1 23.8 27 65-91 95-123 (289)
58 KOG1230 Protein containing rep 41.4 2.5E+02 0.0054 27.0 9.2 18 182-199 234-251 (521)
59 PHA02790 Kelch-like protein; P 40.6 1.7E+02 0.0038 28.7 9.0 14 22-35 314-327 (480)
60 PRK05560 DNA gyrase subunit A; 40.1 4.8E+02 0.01 27.7 19.7 116 72-197 497-620 (805)
61 KOG4441 Proteins containing BT 39.6 2.6E+02 0.0055 28.3 10.0 23 268-290 508-530 (571)
62 KOG2106 Uncharacterized conser 39.2 3.9E+02 0.0085 26.4 12.3 26 173-198 248-274 (626)
63 PRK14131 N-acetylneuraminic ac 38.8 3.4E+02 0.0074 25.6 11.6 17 75-91 132-148 (376)
64 KOG1408 WD40 repeat protein [F 38.4 4.8E+02 0.01 27.1 12.5 30 116-145 215-248 (1080)
65 PRK05560 DNA gyrase subunit A; 37.4 5.3E+02 0.012 27.4 20.8 120 71-201 546-672 (805)
66 PF13418 Kelch_4: Galactose ox 37.1 35 0.00077 21.2 2.4 18 181-198 3-20 (49)
67 KOG0291 WD40-repeat-containing 36.2 5.2E+02 0.011 27.0 21.7 65 13-91 153-219 (893)
68 KOG1275 PAB-dependent poly(A) 36.0 5.8E+02 0.013 27.4 13.7 40 173-212 316-355 (1118)
69 PF03785 Peptidase_C25_C: Pept 35.5 55 0.0012 23.4 3.2 40 55-95 8-48 (81)
70 KOG0282 mRNA splicing factor [ 34.9 1.6E+02 0.0034 28.6 7.0 75 18-101 398-472 (503)
71 PF06204 CBM_X: Putative carbo 33.8 1.3E+02 0.0027 20.6 4.7 31 62-92 23-53 (66)
72 KOG4693 Uncharacterized conser 31.8 1.3E+02 0.0028 27.0 5.6 62 273-349 80-149 (392)
73 PF07250 Glyoxal_oxid_N: Glyox 31.3 1.7E+02 0.0037 25.9 6.4 75 124-200 114-190 (243)
74 KOG1034 Transcriptional repres 31.0 1.3E+02 0.0028 27.8 5.6 58 77-145 323-382 (385)
75 KOG1900 Nuclear pore complex, 30.5 8.1E+02 0.017 27.4 15.4 60 77-146 93-157 (1311)
76 PF04841 Vps16_N: Vps16, N-ter 30.1 5E+02 0.011 24.9 19.9 64 15-89 89-153 (410)
77 KOG0316 Conserved WD40 repeat- 29.7 1.5E+02 0.0033 26.1 5.5 38 52-89 133-171 (307)
78 KOG0293 WD40 repeat-containing 29.1 5.3E+02 0.011 24.8 12.2 26 174-199 443-470 (519)
79 KOG1274 WD40 repeat protein [G 29.0 7.3E+02 0.016 26.4 19.8 66 18-89 16-84 (933)
80 PF03785 Peptidase_C25_C: Pept 28.6 1.2E+02 0.0026 21.6 4.0 39 258-296 9-49 (81)
81 TIGR03548 mutarot_permut cycli 28.2 4.6E+02 0.01 23.9 13.3 17 75-91 164-180 (323)
82 PF06462 Hyd_WA: Propeller; I 28.1 71 0.0015 18.2 2.3 14 182-195 1-14 (32)
83 PF14517 Tachylectin: Tachylec 28.0 4.2E+02 0.009 23.3 9.1 23 121-143 132-155 (229)
84 KOG2444 WD40 repeat protein [G 28.0 1.1E+02 0.0023 26.8 4.4 63 268-345 65-129 (238)
85 PF07646 Kelch_2: Kelch motif; 27.9 60 0.0013 20.2 2.3 10 339-348 11-20 (49)
86 TIGR01062 parC_Gneg DNA topois 26.9 7.6E+02 0.016 26.0 13.6 126 66-206 527-661 (735)
87 KOG1275 PAB-dependent poly(A) 26.3 5.3E+02 0.011 27.6 9.5 38 119-156 315-352 (1118)
88 PRK13979 DNA topoisomerase IV 26.0 8.8E+02 0.019 26.4 16.8 161 69-286 559-767 (957)
89 PF02239 Cytochrom_D1: Cytochr 25.6 5.8E+02 0.012 24.1 9.5 115 65-197 28-156 (369)
90 KOG0289 mRNA splicing factor [ 25.3 6.3E+02 0.014 24.5 9.7 64 18-90 350-418 (506)
91 KOG2280 Vacuolar assembly/sort 25.1 8.1E+02 0.018 25.7 14.4 65 12-89 89-153 (829)
92 TIGR01063 gyrA DNA gyrase, A s 23.0 9.3E+02 0.02 25.6 22.2 166 13-199 542-718 (800)
93 KOG0641 WD40 repeat protein [G 23.0 3E+02 0.0064 24.1 6.1 18 276-293 37-54 (350)
94 PF13964 Kelch_6: Kelch motif 22.8 88 0.0019 19.4 2.4 13 339-351 11-23 (50)
95 PF08450 SGL: SMP-30/Gluconola 21.4 5.1E+02 0.011 22.3 7.9 17 182-198 186-202 (246)
96 TIGR03547 muta_rot_YjhT mutatr 21.3 4.5E+02 0.0099 24.2 7.9 15 131-145 315-329 (346)
97 KOG2111 Uncharacterized conser 20.8 6.8E+02 0.015 23.2 12.5 38 54-91 85-123 (346)
98 PLN02153 epithiospecifier prot 20.6 6.7E+02 0.015 23.0 15.5 17 74-91 130-146 (341)
99 PRK11138 outer membrane biogen 20.4 7.3E+02 0.016 23.4 10.9 17 181-197 376-392 (394)
100 KOG0307 Vesicle coat complex C 20.2 1.4E+02 0.0031 32.0 4.3 35 263-297 253-290 (1049)
101 PF13938 DUF4213: Domain of un 20.2 1.5E+02 0.0033 21.3 3.4 23 116-138 9-31 (87)
No 1
>COG5184 ATS1 Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton]
Probab=100.00 E-value=4.3e-47 Score=345.21 Aligned_cols=305 Identities=25% Similarity=0.381 Sum_probs=244.4
Q ss_pred eeeeeeEEEEeeCCCcEEEEeCCCCCccCCCCCC-----------CCCCCCccceeecCCC-----CCCeEEEecCCCce
Q 042844 13 NVLTSRIFMRSASGTAVVSFGDGSQGALGLPTSL-----------TGVGGDAYEPTRVPGL-----PSDVTSVSAGHYHS 76 (372)
Q Consensus 13 ~~~~~~~~~~l~~~g~vy~wG~n~~gqLG~~~~~-----------~~~~~~~~~p~~i~~~-----~~~i~~I~~G~~h~ 76 (372)
++||..|+++++.||.||+||.|..|+||..... ....+...+|..++.. +.++++++||++++
T Consensus 109 ~acGg~hsl~ld~Dg~lyswG~N~~G~Lgr~~~~~~~~~~~~~~~~~~~~~~~tP~~v~~~s~~~s~~~vv~l~cg~e~s 188 (476)
T COG5184 109 IACGGNHSLGLDHDGNLYSWGDNDDGALGRDIHKDICDQNNDIIDFDDYELESTPFKVPGGSSAKSHLRVVKLACGWEIS 188 (476)
T ss_pred eecCCceEEeecCCCCEEEeccCcccccccccccccccccccccccchhhcccCCceeeccccccCChheEEeecCCceE
Confidence 7899999999999999999999999999997620 1123446788888752 23799999999999
Q ss_pred EEEecCCcEEEEeCCCCCCCcCCCCCCCCc-cCCCceeecCCceeEEEEeecCcEEEEEeCCCcEEEEeCCCCCCCCCCC
Q 042844 77 LAVTNNGAVWAWGRNNEVQLGRGALESRAT-WNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGK 155 (372)
Q Consensus 77 ~~lt~~G~v~~~G~n~~gqlg~~~~~~~~~-~~~p~~i~~~~~~~i~~i~~g~~~~~~lt~~g~v~~~G~n~~gqlg~~~ 155 (372)
++|+++|+||+||....+.++.+...+... ...++++... ...|+++++|.+|.++|+++|++|.||++..||||...
T Consensus 189 vil~~~G~V~~~gt~r~~e~~~g~~~~s~k~~~~~~p~~v~-~~~i~qla~G~dh~i~lt~~G~vy~~Gs~qkgqlG~~~ 267 (476)
T COG5184 189 VILTADGRVYSWGTFRCGELGQGSYKNSQKTSIQFTPLKVP-KKAIVQLAAGADHLIALTNEGKVYGWGSNQKGQLGRPT 267 (476)
T ss_pred EEEccCCcEEEecCccccccccccccccccceeeeeeeecC-chheeeeccCCceEEEEecCCcEEEecCCcccccCCch
Confidence 999999999999999988888885543322 1122333222 45799999999999999999999999999999999875
Q ss_pred CCcccccceEeccc-CCCcEEEEEecCCeEEEEeCCCcEEEEeCCCCCCCCCCCCCCcCCCCCCCcCCCCCCccccchhh
Q 042844 156 DITEAIVPSRVEAL-AGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSST 234 (372)
Q Consensus 156 ~~~~~~~p~~i~~~-~~~~i~~I~~g~~~~~~lt~~g~vy~wG~n~~gqlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (372)
. ....++.++..+ .-..|+.|+||.+|++||+++|+||+||.|.++|++.. +..+...
T Consensus 268 ~-e~~~~~~lv~~~f~i~~i~~vacG~~h~~al~~~G~i~a~G~n~fgqlg~~-~~~~~~a------------------- 326 (476)
T COG5184 268 S-ERLKLVVLVGDPFAIRNIKYVACGKDHSLALDEDGEIYAWGVNIFGQLGAG-SDGEIGA------------------- 326 (476)
T ss_pred h-hhcccccccCChhhhhhhhhcccCcceEEEEcCCCeEEEeccchhcccccC-cccccce-------------------
Confidence 5 333333343332 22347899999999999999999999999999999988 2211100
Q ss_pred HHHhhhhhhcccccccCCCceeceeeec---CccEEEEEecCCeeEEEecCCCEEEEeCCCCCccCCCC--CCCccccee
Q 042844 235 IEKAQKLVSEGMEKEKYMPIIWEPFLVE---GVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREK--QDMGMFPVD 309 (372)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~p~~i~---~~~i~~I~~G~~h~~alt~~G~vy~wG~n~~gqlG~~~--~~~~~~P~~ 309 (372)
..+.|.... ...|..|++|..|+++|..+|.||+||+++++|||..+ ......|.+
T Consensus 327 -------------------~~tk~~~~~~~~~~~i~~is~ge~H~l~L~~~G~l~a~Gr~~~~qlg~~~~~~~~~~~~~~ 387 (476)
T COG5184 327 -------------------LTTKPNYKQLLSGVTICSISAGESHSLILRKDGTLYAFGRGDRGQLGIQEEITIDVSTPTK 387 (476)
T ss_pred -------------------eeccccccccCCCceEEEEecCcceEEEEecCceEEEecCCccccccCcccceeecCCccc
Confidence 112233222 55699999999999999999999999999999999988 555666666
Q ss_pred ec--cccEEEecCCCceEEEEeeccccccCCCccEEEecCCCCCCccCCC---CCCCceEEec
Q 042844 310 IN--FHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMG---PDNVPLVVEG 367 (372)
Q Consensus 310 v~--~~i~~ia~G~~~s~~l~~~~~~~~~~~~g~v~~wG~n~~gqLG~~~---~~~~p~~i~~ 367 (372)
+. .++.+++||..|.++.+. +|+||+||+|++||||+|. +...|+.|++
T Consensus 388 ls~~~~~~~v~~gt~~~~~~t~---------~gsvy~wG~ge~gnlG~g~~~~~~~~pt~i~~ 441 (476)
T COG5184 388 LSVAIKLEQVACGTHHNIARTD---------DGSVYSWGWGEHGNLGNGPKEADVLVPTLIRQ 441 (476)
T ss_pred cccccceEEEEecCccceeecc---------CCceEEecCchhhhccCCchhhhccccccccc
Confidence 66 679999999999999999 9999999999999999988 7777888875
No 2
>COG5184 ATS1 Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton]
Probab=100.00 E-value=1.2e-44 Score=329.23 Aligned_cols=295 Identities=26% Similarity=0.427 Sum_probs=234.4
Q ss_pred eeEEEEeeCCCcEEEEeCCCCCccCCCCCCCCCCCCccceeecCCCC---CCeEEEecCCCceEEEecCCcEEEEeCCCC
Q 042844 17 SRIFMRSASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLP---SDVTSVSAGHYHSLAVTNNGAVWAWGRNNE 93 (372)
Q Consensus 17 ~~~~~~l~~~g~vy~wG~n~~gqLG~~~~~~~~~~~~~~p~~i~~~~---~~i~~I~~G~~h~~~lt~~G~v~~~G~n~~ 93 (372)
..|..+++....||+||.|..+|||++.... ....|...+..+ ..|++++||..|+++|++||+||+||.|..
T Consensus 58 ~~~~~~~~~~~~v~~~Gsn~~~eLGlg~de~----~~~~P~~~~~~~~d~~~i~~~acGg~hsl~ld~Dg~lyswG~N~~ 133 (476)
T COG5184 58 NKHTHLLVKMASVYSWGSNGMNELGLGNDET----KVDRPQLNPFGRIDKASIIKIACGGNHSLGLDHDGNLYSWGDNDD 133 (476)
T ss_pred ccchhhhhheeeeEEEecCcceeeccCCchh----cccCceecCcccccceeeEEeecCCceEEeecCCCCEEEeccCcc
Confidence 4455577889999999999999999999443 368888888664 369999999999999999999999999999
Q ss_pred CCCcCCCC-------------CCCCccCCCceeec----CCceeEEEEeecCcEEEEEeCCCcEEEEeCCCCCCCCCCCC
Q 042844 94 VQLGRGAL-------------ESRATWNDPKRVEG----LDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKD 156 (372)
Q Consensus 94 gqlg~~~~-------------~~~~~~~~p~~i~~----~~~~~i~~i~~g~~~~~~lt~~g~v~~~G~n~~gqlg~~~~ 156 (372)
|+||+... .......+|..++. ....+++++.||+.++++|+++|+||.||....+.++.+..
T Consensus 134 G~Lgr~~~~~~~~~~~~~~~~~~~~~~~tP~~v~~~s~~~s~~~vv~l~cg~e~svil~~~G~V~~~gt~r~~e~~~g~~ 213 (476)
T COG5184 134 GALGRDIHKDICDQNNDIIDFDDYELESTPFKVPGGSSAKSHLRVVKLACGWEISVILTADGRVYSWGTFRCGELGQGSY 213 (476)
T ss_pred cccccccccccccccccccccchhhcccCCceeeccccccCChheEEeecCCceEEEEccCCcEEEecCccccccccccc
Confidence 99999882 22334567888876 23458999999999999999999999999999999888744
Q ss_pred Ccc-----cccceEecccCCCcEEEEEecCCeEEEEeCCCcEEEEeCCCCCCCCCCCCCCcCCCCCCCcCCCCCCccccc
Q 042844 157 ITE-----AIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEIS 231 (372)
Q Consensus 157 ~~~-----~~~p~~i~~~~~~~i~~I~~g~~~~~~lt~~g~vy~wG~n~~gqlg~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (372)
... ..+|..+. ...|+++++|.+|.++|+++|++|.||++.+||||.......
T Consensus 214 ~~s~k~~~~~~p~~v~---~~~i~qla~G~dh~i~lt~~G~vy~~Gs~qkgqlG~~~~e~~------------------- 271 (476)
T COG5184 214 KNSQKTSIQFTPLKVP---KKAIVQLAAGADHLIALTNEGKVYGWGSNQKGQLGRPTSERL------------------- 271 (476)
T ss_pred cccccceeeeeeeecC---chheeeeccCCceEEEEecCCcEEEecCCcccccCCchhhhc-------------------
Confidence 222 23444444 357999999999999999999999999999999998832110
Q ss_pred hhhHHHhhhhhhcccccccCCCceeceeeecCccEEEEEecCCeeEEEecCCCEEEEeCCCCCccCCCCC----CCcccc
Q 042844 232 SSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQ----DMGMFP 307 (372)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~i~~I~~G~~h~~alt~~G~vy~wG~n~~gqlG~~~~----~~~~~P 307 (372)
......|.......|++|+||.+|++||+++|++|+||.|.+||||.+.. ....+|
T Consensus 272 --------------------~~~~lv~~~f~i~~i~~vacG~~h~~al~~~G~i~a~G~n~fgqlg~~~~~~~~a~~tk~ 331 (476)
T COG5184 272 --------------------KLVVLVGDPFAIRNIKYVACGKDHSLALDEDGEIYAWGVNIFGQLGAGSDGEIGALTTKP 331 (476)
T ss_pred --------------------ccccccCChhhhhhhhhcccCcceEEEEcCCCeEEEeccchhcccccCcccccceeeccc
Confidence 00111122222455899999999999999999999999999999999821 111223
Q ss_pred eee--c--cccEEEecCCCceEEEEeeccccccCCCccEEEecCCCCCCccCCC----CCCCceEEe
Q 042844 308 VDI--N--FHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMG----PDNVPLVVE 366 (372)
Q Consensus 308 ~~v--~--~~i~~ia~G~~~s~~l~~~~~~~~~~~~g~v~~wG~n~~gqLG~~~----~~~~p~~i~ 366 (372)
... . ..|..+++|..|+++|.. +|.||+||.+..||||... ...+|+++.
T Consensus 332 ~~~~~~~~~~i~~is~ge~H~l~L~~---------~G~l~a~Gr~~~~qlg~~~~~~~~~~~~~~ls 389 (476)
T COG5184 332 NYKQLLSGVTICSISAGESHSLILRK---------DGTLYAFGRGDRGQLGIQEEITIDVSTPTKLS 389 (476)
T ss_pred cccccCCCceEEEEecCcceEEEEec---------CceEEEecCCccccccCcccceeecCCccccc
Confidence 222 2 458999999999999999 9999999999999999988 444555555
No 3
>KOG1427 consensus Uncharacterized conserved protein, contains RCC1 domain [Function unknown]
Probab=100.00 E-value=4.8e-40 Score=281.36 Aligned_cols=291 Identities=24% Similarity=0.343 Sum_probs=232.9
Q ss_pred eeeeEEEEeeCCCcEEEEeCCCCCccCCCCCCCCCCCCccceeecCCCCC-CeEEEecCCCceEEEecCCcEEEEeCCCC
Q 042844 15 LTSRIFMRSASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPS-DVTSVSAGHYHSLAVTNNGAVWAWGRNNE 93 (372)
Q Consensus 15 ~~~~~~~~l~~~g~vy~wG~n~~gqLG~~~~~~~~~~~~~~p~~i~~~~~-~i~~I~~G~~h~~~lt~~G~v~~~G~n~~ 93 (372)
+...|+++++.+|++|.||.|..||||+++ .....+|+.|+.|.. +|++-+||++|+++||.+|+||.||.|.+
T Consensus 65 ~~aaH~vli~megk~~~wGRNekGQLGhgD-----~k~~e~Ptvi~gL~~~~iv~AA~GrnHTl~ltdtG~v~afGeNK~ 139 (443)
T KOG1427|consen 65 CAAAHCVLIDMEGKCYTWGRNEKGQLGHGD-----MKQRERPTVISGLSKHKIVKAAAGRNHTLVLTDTGQVLAFGENKY 139 (443)
T ss_pred cchhhEEEEecccceeecccCccCccCccc-----hhhccCCchhhhhhhhhHHHHhhccCcEEEEecCCcEEEeccccc
Confidence 456789999999999999999999999997 567899999998853 79999999999999999999999999999
Q ss_pred CCCcCCCCCCCCccCCCceeecCCceeEEEEeecCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcc-------------c
Q 042844 94 VQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITE-------------A 160 (372)
Q Consensus 94 gqlg~~~~~~~~~~~~p~~i~~~~~~~i~~i~~g~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~-------------~ 160 (372)
||||.+..+... ..|.++-. ....|+.|.||..+++.|+..+.|.++|...|||||++.+... +
T Consensus 140 GQlGlgn~~~~v--~s~~~~~~-~~~~v~~v~cga~ftv~l~~~~si~t~glp~ygqlgh~td~~~~~~~~~~~~~~e~~ 216 (443)
T KOG1427|consen 140 GQLGLGNAKNEV--ESTPLPCV-VSDEVTNVACGADFTVWLSSTESILTAGLPQYGQLGHGTDNEFNMKDSSVRLAYEAQ 216 (443)
T ss_pred cccccccccccc--ccCCCccc-cCccceeeccccceEEEeecccceeecCCccccccccCcchhhccccccceeeeecC
Confidence 999999987432 23322222 2337899999999999999999999999999999999865221 2
Q ss_pred ccceEecccCCCcEEEEEecCCeEEEEeCCCcEEEEeCCCCCCCCCCCCCCcCCCCCCCcCCCCCCccccchhhHHHhhh
Q 042844 161 IVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQK 240 (372)
Q Consensus 161 ~~p~~i~~~~~~~i~~I~~g~~~~~~lt~~g~vy~wG~n~~gqlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (372)
..|..+..+.+..|++++||.+|++|++++++||.||...+|.||+...+.+.
T Consensus 217 pr~~~i~~~dgvqiv~~acg~nhtvavd~nkrVysWGFGGyGRLGHaEqKDEm--------------------------- 269 (443)
T KOG1427|consen 217 PRPKAIASLDGVQIVKVACGTNHTVAVDKNKRVYSWGFGGYGRLGHAEQKDEM--------------------------- 269 (443)
T ss_pred CCccccccccceeeEEEeccCcceeeecCCccEEEeccccccccccccchhhH---------------------------
Confidence 23455556778899999999999999999999999999999999998332222
Q ss_pred hhhcccccccCCCceeceeeec-----CccEEEEEecCCeeEEEecCCCEEEEeCCCCCccCCCCCCCcccceeec--cc
Q 042844 241 LVSEGMEKEKYMPIIWEPFLVE-----GVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDIN--FH 313 (372)
Q Consensus 241 ~~~~~~~~~~~~~~~~~p~~i~-----~~~i~~I~~G~~h~~alt~~G~vy~wG~n~~gqlG~~~~~~~~~P~~v~--~~ 313 (372)
.|++++ ..--.++.||...++++.+-|.+|.||.+.. .++.....+|+... .+
T Consensus 270 ----------------vpRlik~Fd~~~rg~~~~~~g~t~Sl~v~e~G~Lf~~g~~k~----~ge~~mypkP~~dlsgwn 329 (443)
T KOG1427|consen 270 ----------------VPRLIKVFDRNNRGPPNAILGYTGSLNVAEGGQLFMWGKIKN----NGEDWMYPKPMMDLSGWN 329 (443)
T ss_pred ----------------HHHHHHHhcCCCCCCcceeeecccceeecccceeEEeecccc----CcccccCCCchhhcCCcc
Confidence 233332 3445678899999999999999999998763 12333334454332 67
Q ss_pred cEEEecCCCceEEEEeeccccccCCCccEEEecCCCCCCc-cCCC---CCCCceEEecCCC
Q 042844 314 PVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQL-GRMG---PDNVPLVVEGLEG 370 (372)
Q Consensus 314 i~~ia~G~~~s~~l~~~~~~~~~~~~g~v~~wG~n~~gqL-G~~~---~~~~p~~i~~~~~ 370 (372)
+..+.|+..|.++-. |..+.+||...+|.+ |-++ ....|+.++-|++
T Consensus 330 l~~~~~~~~h~~v~a----------d~s~i~wg~~~~g~~lggp~~Qkss~~Pk~v~~l~~ 380 (443)
T KOG1427|consen 330 LRWMDSGSMHHFVGA----------DSSCISWGHAQYGELLGGPNGQKSSAAPKKVDMLEG 380 (443)
T ss_pred CCCcCccceeeeecc----------cccccccccccccccccCccccccccCccccchhcc
Confidence 899999999987665 789999999998776 4444 6667888887765
No 4
>KOG1427 consensus Uncharacterized conserved protein, contains RCC1 domain [Function unknown]
Probab=100.00 E-value=2.6e-37 Score=264.61 Aligned_cols=299 Identities=23% Similarity=0.371 Sum_probs=241.6
Q ss_pred CCCcEEEEeCCCCCccCCCCCCCCCCCCccceeecCCCCC-CeEEEecCC--CceEEEecCCcEEEEeCCCCCCCcCCCC
Q 042844 25 SGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPS-DVTSVSAGH--YHSLAVTNNGAVWAWGRNNEVQLGRGAL 101 (372)
Q Consensus 25 ~~g~vy~wG~n~~gqLG~~~~~~~~~~~~~~p~~i~~~~~-~i~~I~~G~--~h~~~lt~~G~v~~~G~n~~gqlg~~~~ 101 (372)
..|++..+|.-..-+.|.-+-.. ..+...|.++..+.. +|+-|+.|. -|+++|+-+|+.|.||+|..||||.++.
T Consensus 18 ~~g~ml~~g~v~wd~tgkRd~~~--~~NL~sphR~~~l~gv~iR~VasG~~aaH~vli~megk~~~wGRNekGQLGhgD~ 95 (443)
T KOG1427|consen 18 KGGEMLFCGAVAWDITGKRDGAM--EGNLVSPHRLRPLVGVNIRFVASGCAAAHCVLIDMEGKCYTWGRNEKGQLGHGDM 95 (443)
T ss_pred CCccEEEeccchhhhhccccccc--ccccccceeccccccceEEEEecccchhhEEEEecccceeecccCccCccCccch
Confidence 56889999988877777655332 235677777765542 577777665 7999999999999999999999999976
Q ss_pred CCCCccCCCceeecCCceeEEEEeecCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccccceEecccCCCcEEEEEecC
Q 042844 102 ESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGW 181 (372)
Q Consensus 102 ~~~~~~~~p~~i~~~~~~~i~~i~~g~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~p~~i~~~~~~~i~~I~~g~ 181 (372)
. ...+|+.|+.++..+|++.+||++|+++|+++|+||.||.|.+||||.++.......|.++- ....+|+.|+||.
T Consensus 96 k---~~e~Ptvi~gL~~~~iv~AA~GrnHTl~ltdtG~v~afGeNK~GQlGlgn~~~~v~s~~~~~-~~~~~v~~v~cga 171 (443)
T KOG1427|consen 96 K---QRERPTVISGLSKHKIVKAAAGRNHTLVLTDTGQVLAFGENKYGQLGLGNAKNEVESTPLPC-VVSDEVTNVACGA 171 (443)
T ss_pred h---hccCCchhhhhhhhhHHHHhhccCcEEEEecCCcEEEecccccccccccccccccccCCCcc-ccCccceeecccc
Confidence 6 44689999999999999999999999999999999999999999999998877766665544 4456899999999
Q ss_pred CeEEEEeCCCcEEEEeCCCCCCCCCCCCCCcCCCCCCCcCCCCCCccccchhhHHHhhhhhhcccccccCCCceeceeee
Q 042844 182 GHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLV 261 (372)
Q Consensus 182 ~~~~~lt~~g~vy~wG~n~~gqlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i 261 (372)
++++.|+..+.+.++|.-.|||||+++..--.- ....+...- .....|..|
T Consensus 172 ~ftv~l~~~~si~t~glp~ygqlgh~td~~~~~-----------------------~~~~~~~~~------e~~pr~~~i 222 (443)
T KOG1427|consen 172 DFTVWLSSTESILTAGLPQYGQLGHGTDNEFNM-----------------------KDSSVRLAY------EAQPRPKAI 222 (443)
T ss_pred ceEEEeecccceeecCCccccccccCcchhhcc-----------------------ccccceeee------ecCCCcccc
Confidence 999999999999999999999999984321000 000000000 001123333
Q ss_pred c---CccEEEEEecCCeeEEEecCCCEEEEeCCCCCccCCCCCCCcccceeec------cccEEEecCCCceEEEEeecc
Q 042844 262 E---GVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDIN------FHPVSISSGLGHSLAICEVRS 332 (372)
Q Consensus 262 ~---~~~i~~I~~G~~h~~alt~~G~vy~wG~n~~gqlG~~~~~~~~~P~~v~------~~i~~ia~G~~~s~~l~~~~~ 332 (372)
. ..+|++++||.+|++|++.+++||.||...+|.||....++...|.++. .--..+.||+..++++.+
T Consensus 223 ~~~dgvqiv~~acg~nhtvavd~nkrVysWGFGGyGRLGHaEqKDEmvpRlik~Fd~~~rg~~~~~~g~t~Sl~v~e--- 299 (443)
T KOG1427|consen 223 ASLDGVQIVKVACGTNHTVAVDKNKRVYSWGFGGYGRLGHAEQKDEMVPRLIKVFDRNNRGPPNAILGYTGSLNVAE--- 299 (443)
T ss_pred ccccceeeEEEeccCcceeeecCCccEEEeccccccccccccchhhHHHHHHHHhcCCCCCCcceeeecccceeecc---
Confidence 3 8899999999999999999999999999999999999998888888774 345688999999999999
Q ss_pred ccccCCCccEEEecCCCCCCccCCCCCCCceEEecCCCC
Q 042844 333 SNVTGGARGIVSWGWNRSSQLGRMGPDNVPLVVEGLEGE 371 (372)
Q Consensus 333 ~~~~~~~g~v~~wG~n~~gqLG~~~~~~~p~~i~~~~~~ 371 (372)
-|.+|.||.+.. ++++--+|+++.+|+|.
T Consensus 300 ------~G~Lf~~g~~k~----~ge~~mypkP~~dlsgw 328 (443)
T KOG1427|consen 300 ------GGQLFMWGKIKN----NGEDWMYPKPMMDLSGW 328 (443)
T ss_pred ------cceeEEeecccc----CcccccCCCchhhcCCc
Confidence 999999999886 45667789999999885
No 5
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=99.95 E-value=9.5e-28 Score=229.23 Aligned_cols=271 Identities=23% Similarity=0.341 Sum_probs=216.0
Q ss_pred eeEEEEeeCCCcEEEEeCCCCCccCCCCCCCCCCCCccceeecCCCCCC---eEEEecCCCceEEEecCCcEEEEeCCCC
Q 042844 17 SRIFMRSASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSD---VTSVSAGHYHSLAVTNNGAVWAWGRNNE 93 (372)
Q Consensus 17 ~~~~~~l~~~g~vy~wG~n~~gqLG~~~~~~~~~~~~~~p~~i~~~~~~---i~~I~~G~~h~~~lt~~G~v~~~G~n~~ 93 (372)
.....+++.-+.||+||.|.+..||++. ......|..+..|... +.+|+.+..|+++|++.|+||+||-...
T Consensus 132 ~~i~~~~d~pndvy~wG~N~N~tLGign-----~~~~~~Pe~Vdlf~~Sg~~~~qV~l~kfHSvfl~~kgqvY~cGhG~G 206 (1267)
T KOG0783|consen 132 STIHPVLDLPNDVYGWGTNVNNTLGIGN-----GKEPSSPERVDLFKTSGQLFSQVQLSKFHSVFLTEKGQVYVCGHGAG 206 (1267)
T ss_pred cccccccCCccceeEecccccccccccC-----CCCCCChHHhHHHHhccHHHHHHHHhhceeeEecCCCcEEEeccCCC
Confidence 3445667788999999999999999998 4567888888766421 8999999999999999999999999999
Q ss_pred CCCcCCCCCCCCccCCCceeecCCceeEEEEeecCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccccceEeccc--CC
Q 042844 94 VQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEAL--AG 171 (372)
Q Consensus 94 gqlg~~~~~~~~~~~~p~~i~~~~~~~i~~i~~g~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~p~~i~~~--~~ 171 (372)
|.||.+... ....|++++.+...++.+|+....|+++||++|.||+||.|.++|||..++......|.+|... .+
T Consensus 207 GRlG~gdeq---~~~iPkrV~gL~gh~~~qisvs~~HslvLT~~g~Vys~GlN~~hqLG~~~~~~~~~~p~qI~a~r~kg 283 (1267)
T KOG0783|consen 207 GRLGFGDEQ---YNFIPKRVPGLIGHKVIQISVSHTHSLVLTKFGSVYSWGLNGSHQLGLSNDELKKDDPIQITARRIKG 283 (1267)
T ss_pred CccCcCccc---ccccccccccccccceEEEEeecceeEEEeecceEEEeecCcccccCCcCchhhcCchhhhhhHhhcc
Confidence 999999666 5678999999999999999999999999999999999999999999998776666666666532 12
Q ss_pred -CcEEEEEecCCeEEEEeCCCcEEEEeCCCCCCCCCCCCCCcCCCCCCCcCCCCCCccccchhhHHHhhhhhhccccccc
Q 042844 172 -EKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEK 250 (372)
Q Consensus 172 -~~i~~I~~g~~~~~~lt~~g~vy~wG~n~~gqlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (372)
..|+.++||..|++|.+.. .||+||.| .||||..+.
T Consensus 284 ~~~iIgvaAg~~hsVawt~~-~VY~wGlN-~GQlGi~~n----------------------------------------- 320 (1267)
T KOG0783|consen 284 FKQIIGVAAGKSHSVAWTDT-DVYSWGLN-NGQLGISDN----------------------------------------- 320 (1267)
T ss_pred hhhhhhhhcccceeeeeecc-eEEEeccc-CceecCCCC-----------------------------------------
Confidence 3699999999999999977 89999998 689997632
Q ss_pred CCCceeceeeec--CccEEEEEecCCeeEEEecCCCEEEEeCCCCCccCCCCCCCcccceeec--------cccEEEecC
Q 042844 251 YMPIIWEPFLVE--GVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDIN--------FHPVSISSG 320 (372)
Q Consensus 251 ~~~~~~~p~~i~--~~~i~~I~~G~~h~~alt~~G~vy~wG~n~~gqlG~~~~~~~~~P~~v~--------~~i~~ia~G 320 (372)
.+.+..|+.+- ...|.-|+|...-++++++++.+|++-+-....+ ..+....+.+.+. .++++..+.
T Consensus 321 -~~~Vt~Pr~l~~~~~~v~~v~a~~~ATVc~~~~~~i~~~ady~~~k~--~~n~~~lks~~V~gg~l~~~~~~~~k~~a~ 397 (1267)
T KOG0783|consen 321 -ISVVTTPRRLAGLLSPVIHVVATTRATVCLLQNNSIIAFADYNQVKL--PFNVDFLKSLKVTGGPLSLTRFNVRKLLAS 397 (1267)
T ss_pred -CceeecchhhcccccceEEEEecCccEEEEecCCcEEEEecccceec--CcchhccceeEEecCccchhhhhhhhcchh
Confidence 22223343222 5678999999999999999999999886443333 2222222333332 456677777
Q ss_pred CCceEEEEeeccccccCCCccEEEecCCCC
Q 042844 321 LGHSLAICEVRSSNVTGGARGIVSWGWNRS 350 (372)
Q Consensus 321 ~~~s~~l~~~~~~~~~~~~g~v~~wG~n~~ 350 (372)
..--+++++ -|+||+|-.++.
T Consensus 398 ~~kll~lte---------~g~Vy~w~s~ns 418 (1267)
T KOG0783|consen 398 ENKLLVLTE---------LGEVYEWDSKNS 418 (1267)
T ss_pred hhheeeecc---------CCeEEEEecCCC
Confidence 788899999 999999987654
No 6
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=99.95 E-value=2.1e-26 Score=227.90 Aligned_cols=315 Identities=21% Similarity=0.300 Sum_probs=218.0
Q ss_pred eeeeeeEEEEeeCCCcEEEEeCCCCCccCCCCCCCCCCCCccceeecCCCCCCeEEEecCCCceEEEecC--CcEEEEeC
Q 042844 13 NVLTSRIFMRSASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNN--GAVWAWGR 90 (372)
Q Consensus 13 ~~~~~~~~~~l~~~g~vy~wG~n~~gqLG~~~~~~~~~~~~~~p~~i~~~~~~i~~I~~G~~h~~~lt~~--G~v~~~G~ 90 (372)
+-+++++.++.+.+|+||.-|... .+|+... -+.+..+. ++++|++|+.|-....++.-. |-+++-|+
T Consensus 484 L~~~RE~A~iqa~sGKvYYaGn~t--~~Gl~e~-----G~nWmEL~---l~~~IVq~SVG~D~~~~~~~A~~G~I~~v~D 553 (3738)
T KOG1428|consen 484 LHFTREMAFIQARSGKVYYAGNGT--RFGLFET-----GNNWMELC---LPEPIVQISVGIDTIMFRSGAGHGWIASVDD 553 (3738)
T ss_pred cccchhhhhhhhcCccEEEecCcc--EEeEEcc-----CCceEEec---CCCceEEEEeccchhheeeccCcceEEeccC
Confidence 446788889999999999999865 5676652 23444444 448999999999888887654 45555553
Q ss_pred CCCCCCcCCCCCCCCccCCCceeecCCceeEEEEeecCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccccceEecccC
Q 042844 91 NNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALA 170 (372)
Q Consensus 91 n~~gqlg~~~~~~~~~~~~p~~i~~~~~~~i~~i~~g~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~p~~i~~~~ 170 (372)
... ..+..++...+..+|+++.+...-.-.++++|++|+.|... ........++..+.
T Consensus 554 ~k~-------------~~~~Rr~~P~n~rKIv~v~~s~~VY~~vSenGkifM~G~~t---------m~~n~SSqmln~L~ 611 (3738)
T KOG1428|consen 554 KKR-------------NGRLRRLVPSNRRKIVHVCASGHVYGYVSENGKIFMGGLHT---------MRVNVSSQMLNGLD 611 (3738)
T ss_pred ccc-------------ccchhhcCCCCcceeEEEeeeeEEEEEEccCCeEEeeccee---------EEecchHHHhhccc
Confidence 211 11222233345568999988777788999999999998732 22223445666777
Q ss_pred CCcEEEEEecCCeEEEEeCCCcEEEEeCCCCCCCCCCCCCCcCC-CCC-----CCcCCCCCCccccc-----------hh
Q 042844 171 GEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESS-PLD-----SNIDRSSESDQEIS-----------SS 233 (372)
Q Consensus 171 ~~~i~~I~~g~~~~~~lt~~g~vy~wG~n~~gqlg~~~~~~~~~-~~~-----~~~~~~~~~~~~~~-----------~~ 233 (372)
+.-|.+++.|..|.++++.+|+||+||.|+.+|.|+-..+.... |.. +.+.++..+.=..+ ..
T Consensus 612 ~~~isslAlGKsH~~av~rNG~l~T~GlNN~~QCGRVEs~sTt~s~~~s~~~e~~iCP~G~HtW~~dt~~VCa~CG~Cs~ 691 (3738)
T KOG1428|consen 612 NVMISSLALGKSHGVAVTRNGHLFTWGLNNMNQCGRVESTSTTSSPRHSGRQEYQICPIGEHTWLTDTPSVCAQCGLCSA 691 (3738)
T ss_pred cceeehhhccccceeEEEeCCeEEEEecCCcccccccccccccCCcccccceeecccCCccceeecCCcchhhhcccccc
Confidence 88899999999999999999999999999999999865432221 111 11111111110000 00
Q ss_pred h-HH------Hhhhhhhcc-------------cccc-------------------cCCCceeceeeec------CccEEE
Q 042844 234 T-IE------KAQKLVSEG-------------MEKE-------------------KYMPIIWEPFLVE------GVEVVD 268 (372)
Q Consensus 234 ~-~~------~~~~~~~~~-------------~~~~-------------------~~~~~~~~p~~i~------~~~i~~ 268 (372)
. +. +.......+ .-.+ ...-....|-++. ..++.+
T Consensus 692 ~GvaC~~~~RP~G~mC~CG~GES~C~~CG~Cr~C~e~tE~~QPG~aqHvQ~~staa~QR~~~HPs~V~~sq~~Hdvkv~s 771 (3738)
T KOG1428|consen 692 RGVACGRVPRPKGTMCHCGVGESTCLRCGLCRPCGEVTEPAQPGRAQHVQFSSTAAPQRSTLHPSRVILSQGPHDVKVSS 771 (3738)
T ss_pred cccccccCCCCCCcccccCCCcccceeccccccccCcCCcCCCCHHHhheecccccccccccCchheeeccCCcceeEEE
Confidence 0 00 000000000 0000 0000111233332 678999
Q ss_pred EEecCCeeEEEecCCCEEEEeCCCCCccCCCCCCCcccceeec----cccEEEecCCCceEEEEeeccccccCCCccEEE
Q 042844 269 IACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDIN----FHPVSISSGLGHSLAICEVRSSNVTGGARGIVS 344 (372)
Q Consensus 269 I~~G~~h~~alt~~G~vy~wG~n~~gqlG~~~~~~~~~P~~v~----~~i~~ia~G~~~s~~l~~~~~~~~~~~~g~v~~ 344 (372)
|+||..|+++|.+|++||++|.|.|||||.|+......|+++. ..+++|+||++|++++.+ ||.||.
T Consensus 772 VSCG~~HtVlL~sd~~VfTFG~~~HGQLG~GDt~Sk~~Pq~V~~~~~t~~vQVaAGSNHT~l~~~---------DGsVFT 842 (3738)
T KOG1428|consen 772 VSCGNFHTVLLASDRRVFTFGSNCHGQLGVGDTLSKNTPQQVILPSDTVIVQVAAGSNHTILRAN---------DGSVFT 842 (3738)
T ss_pred EeccCceEEEEecCCcEEEecCCcccccCcCccccCCCcceEEcCCCCceEEEecCCCceEEEec---------CCcEEE
Confidence 9999999999999999999999999999999999999999874 468999999999999999 999999
Q ss_pred ecCCCCCCccCCC-----CCCCceEEecC
Q 042844 345 WGWNRSSQLGRMG-----PDNVPLVVEGL 368 (372)
Q Consensus 345 wG~n~~gqLG~~~-----~~~~p~~i~~~ 368 (372)
+|.-..||||++. ....|.+++++
T Consensus 843 FGaF~KGQL~RP~~e~~~WNA~Pe~v~~~ 871 (3738)
T KOG1428|consen 843 FGAFGKGQLARPAGEKAGWNAIPEKVSGF 871 (3738)
T ss_pred eccccCccccCccccccccccCCCcCCCC
Confidence 9999999999987 55678887765
No 7
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=99.92 E-value=4.5e-25 Score=211.10 Aligned_cols=235 Identities=23% Similarity=0.366 Sum_probs=190.4
Q ss_pred eEEEecCCCceEEEecCCcEEEEeCCCCCCCcCCCCCCCCccCCCceeecC--CceeEEEEeecCcEEEEEeCCCcEEEE
Q 042844 66 VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGL--DQVNVCAAFASGVVSSAIGDDGSLWVW 143 (372)
Q Consensus 66 i~~I~~G~~h~~~lt~~G~v~~~G~n~~gqlg~~~~~~~~~~~~p~~i~~~--~~~~i~~i~~g~~~~~~lt~~g~v~~~ 143 (372)
+-.+-|...| .+++.-.+||.||.|....||.+..+ ....|..+..+ +++-+.+|..+.+|+++|++.|+||+|
T Consensus 126 ~~r~~~~~i~-~~~d~pndvy~wG~N~N~tLGign~~---~~~~Pe~Vdlf~~Sg~~~~qV~l~kfHSvfl~~kgqvY~c 201 (1267)
T KOG0783|consen 126 LSRVLSSTIH-PVLDLPNDVYGWGTNVNNTLGIGNGK---EPSSPERVDLFKTSGQLFSQVQLSKFHSVFLTEKGQVYVC 201 (1267)
T ss_pred Hhhccccccc-cccCCccceeEecccccccccccCCC---CCCChHHhHHHHhccHHHHHHHHhhceeeEecCCCcEEEe
Confidence 3344444444 35677789999999999999999988 44678877765 355678899999999999999999999
Q ss_pred eCCCCCCCCCCCCCcccccceEecccCCCcEEEEEecCCeEEEEeCCCcEEEEeCCCCCCCCCCCCCCcCCCCCCCcCCC
Q 042844 144 GKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRS 223 (372)
Q Consensus 144 G~n~~gqlg~~~~~~~~~~p~~i~~~~~~~i~~I~~g~~~~~~lt~~g~vy~wG~n~~gqlg~~~~~~~~~~~~~~~~~~ 223 (372)
|.+.-|+||++ +......|.+++.+.+.+|.+|++..+|+++||+.|.||.||.|..+|||.....
T Consensus 202 GhG~GGRlG~g-deq~~~iPkrV~gL~gh~~~qisvs~~HslvLT~~g~Vys~GlN~~hqLG~~~~~------------- 267 (1267)
T KOG0783|consen 202 GHGAGGRLGFG-DEQYNFIPKRVPGLIGHKVIQISVSHTHSLVLTKFGSVYSWGLNGSHQLGLSNDE------------- 267 (1267)
T ss_pred ccCCCCccCcC-cccccccccccccccccceEEEEeecceeEEEeecceEEEeecCcccccCCcCch-------------
Confidence 99999999999 4477789999999999999999999999999999999999999999999987321
Q ss_pred CCCccccchhhHHHhhhhhhcccccccCCCceeceeeec-CccEEEEEecCCeeEEEecCCCEEEEeCCCCCccCCCCCC
Q 042844 224 SESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVE-GVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQD 302 (372)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~-~~~i~~I~~G~~h~~alt~~G~vy~wG~n~~gqlG~~~~~ 302 (372)
.....|....+..+. ...|+.|+||..|++|-+.. .||+||.| .||||..+..
T Consensus 268 ------------------------~~~~~p~qI~a~r~kg~~~iIgvaAg~~hsVawt~~-~VY~wGlN-~GQlGi~~n~ 321 (1267)
T KOG0783|consen 268 ------------------------LKKDDPIQITARRIKGFKQIIGVAAGKSHSVAWTDT-DVYSWGLN-NGQLGISDNI 321 (1267)
T ss_pred ------------------------hhcCchhhhhhHhhcchhhhhhhhcccceeeeeecc-eEEEeccc-CceecCCCCC
Confidence 111222333455555 45899999999999888855 69999998 7999987654
Q ss_pred C-cccceeec---cccEEEecCCCceEEEEeeccccccCCCccEEEecCCCCCCc
Q 042844 303 M-GMFPVDIN---FHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQL 353 (372)
Q Consensus 303 ~-~~~P~~v~---~~i~~ia~G~~~s~~l~~~~~~~~~~~~g~v~~wG~n~~gqL 353 (372)
. ...|..+. ..|..|+|....++++++ ++.+|++-+.+.-.+
T Consensus 322 ~~Vt~Pr~l~~~~~~v~~v~a~~~ATVc~~~---------~~~i~~~ady~~~k~ 367 (1267)
T KOG0783|consen 322 SVVTTPRRLAGLLSPVIHVVATTRATVCLLQ---------NNSIIAFADYNQVKL 367 (1267)
T ss_pred ceeecchhhcccccceEEEEecCccEEEEec---------CCcEEEEecccceec
Confidence 3 34575443 789999999999999999 999999987665444
No 8
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=99.81 E-value=3.4e-19 Score=177.53 Aligned_cols=181 Identities=24% Similarity=0.406 Sum_probs=141.4
Q ss_pred eeeeEEEEeeCCCcEEEEeCCCCCccCCCCCCCCCCCCccceeecCCCCC-CeEEEecCCCceEEEecCCcEEEEeCCCC
Q 042844 15 LTSRIFMRSASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPS-DVTSVSAGHYHSLAVTNNGAVWAWGRNNE 93 (372)
Q Consensus 15 ~~~~~~~~l~~~g~vy~wG~n~~gqLG~~~~~~~~~~~~~~p~~i~~~~~-~i~~I~~G~~h~~~lt~~G~v~~~G~n~~ 93 (372)
+....+-.+.++|++|..|--. . ...-....+..+.. -|.+++.|..|+++++.+|+||.||.|+.
T Consensus 576 ~s~~VY~~vSenGkifM~G~~t--m-----------~~n~SSqmln~L~~~~isslAlGKsH~~av~rNG~l~T~GlNN~ 642 (3738)
T KOG1428|consen 576 ASGHVYGYVSENGKIFMGGLHT--M-----------RVNVSSQMLNGLDNVMISSLALGKSHGVAVTRNGHLFTWGLNNM 642 (3738)
T ss_pred eeeEEEEEEccCCeEEeeccee--E-----------EecchHHHhhccccceeehhhccccceeEEEeCCeEEEEecCCc
Confidence 4455667788999999998531 0 00011123333433 38999999999999999999999999999
Q ss_pred CCCcCCCCCCCCc-------------------------------------------------------------------
Q 042844 94 VQLGRGALESRAT------------------------------------------------------------------- 106 (372)
Q Consensus 94 gqlg~~~~~~~~~------------------------------------------------------------------- 106 (372)
+|+|+-.......
T Consensus 643 ~QCGRVEs~sTt~s~~~s~~~e~~iCP~G~HtW~~dt~~VCa~CG~Cs~~GvaC~~~~RP~G~mC~CG~GES~C~~CG~C 722 (3738)
T KOG1428|consen 643 NQCGRVESTSTTSSPRHSGRQEYQICPIGEHTWLTDTPSVCAQCGLCSARGVACGRVPRPKGTMCHCGVGESTCLRCGLC 722 (3738)
T ss_pred ccccccccccccCCcccccceeecccCCccceeecCCcchhhhcccccccccccccCCCCCCcccccCCCcccceecccc
Confidence 9999754321100
Q ss_pred ----------------------cCC-------Ccee---ecCCceeEEEEeecCcEEEEEeCCCcEEEEeCCCCCCCCCC
Q 042844 107 ----------------------WND-------PKRV---EGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLG 154 (372)
Q Consensus 107 ----------------------~~~-------p~~i---~~~~~~~i~~i~~g~~~~~~lt~~g~v~~~G~n~~gqlg~~ 154 (372)
... |.++ ...-++++.+++||..|+++|-+|++||+||+|.+||||.+
T Consensus 723 r~C~e~tE~~QPG~aqHvQ~~staa~QR~~~HPs~V~~sq~~Hdvkv~sVSCG~~HtVlL~sd~~VfTFG~~~HGQLG~G 802 (3738)
T KOG1428|consen 723 RPCGEVTEPAQPGRAQHVQFSSTAAPQRSTLHPSRVILSQGPHDVKVSSVSCGNFHTVLLASDRRVFTFGSNCHGQLGVG 802 (3738)
T ss_pred ccccCcCCcCCCCHHHhheecccccccccccCchheeeccCCcceeEEEEeccCceEEEEecCCcEEEecCCcccccCcC
Confidence 001 1111 12345789999999999999999999999999999999999
Q ss_pred CCCcccccceEecccCCCcEEEEEecCCeEEEEeCCCcEEEEeCCCCCCCCCCCC
Q 042844 155 KDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGK 209 (372)
Q Consensus 155 ~~~~~~~~p~~i~~~~~~~i~~I~~g~~~~~~lt~~g~vy~wG~n~~gqlg~~~~ 209 (372)
+. .....|+++..+++..|++|++|.+|++++.+||+||+||.-..|||++...
T Consensus 803 Dt-~Sk~~Pq~V~~~~~t~~vQVaAGSNHT~l~~~DGsVFTFGaF~KGQL~RP~~ 856 (3738)
T KOG1428|consen 803 DT-LSKNTPQQVILPSDTVIVQVAAGSNHTILRANDGSVFTFGAFGKGQLARPAG 856 (3738)
T ss_pred cc-ccCCCcceEEcCCCCceEEEecCCCceEEEecCCcEEEeccccCccccCccc
Confidence 66 6677899999888889999999999999999999999999999999998743
No 9
>PF00415 RCC1: Regulator of chromosome condensation (RCC1) repeat; InterPro: IPR000408 The regulator of chromosome condensation (RCC1) [] is a eukaryotic protein which binds to chromatin and interacts with ran, a nuclear GTP-binding protein IPR002041 from INTERPRO, to promote the loss of bound GDP and the uptake of fresh GTP, thus acting as a guanine-nucleotide dissociation stimulator (GDS). The interaction of RCC1 with ran probably plays an important role in the regulation of gene expression. RCC1, known as PRP20 or SRM1 in yeast, pim1 in fission yeast and BJ1 in Drosophila, is a protein that contains seven tandem repeats of a domain of about 50 to 60 amino acids. As shown in the following schematic representation, the repeats make up the major part of the length of the protein. Outside the repeat region, there is just a small N-terminal domain of about 40 to 50 residues and, in the Drosophila protein only, a C-terminal domain of about 130 residues. +----+-------+-------+-------+-------+-------+-------+-------+-------------+ |N-t.|Rpt. 1 |Rpt. 2 |Rpt. 3 |Rpt. 4 |Rpt. 5 |Rpt. 6 |Rpt. 7 | C-terminal | +----+-------+-------+-------+-------+-------+-------+-------+-------------+ The RCC1-type of repeat is also found in the X-linked retinitis pigmentosa GTPase regulator []. The RCC repeats form a beta-propeller structure.; PDB: 3MVD_L 3OF7_A 1I2M_D 1A12_B 3KCI_A 4DNV_B 4DNU_A 4D9S_B 4DNW_A.
Probab=99.27 E-value=9.5e-12 Score=82.14 Aligned_cols=51 Identities=43% Similarity=0.763 Sum_probs=47.0
Q ss_pred CCcEEEEeCCCCCCCCCCCCCcccccceEecccCCCcEEEEEecCCeEEEE
Q 042844 137 DGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQ 187 (372)
Q Consensus 137 ~g~v~~~G~n~~gqlg~~~~~~~~~~p~~i~~~~~~~i~~I~~g~~~~~~l 187 (372)
||+||+||.|.+||||..........|++++.+...+|++|+||.+|++||
T Consensus 1 dG~vy~wG~n~~GqLG~~~~~~~~~~P~~v~~~~~~~i~~va~G~~ht~~l 51 (51)
T PF00415_consen 1 DGRVYSWGSNDYGQLGSGGDNKNVSVPTKVPFLSGVRIVQVACGSDHTLAL 51 (51)
T ss_dssp TSEEEEEEEETTSTTSSSSSSSEEEEEEEEGGGTTSEEEEEEEESSEEEEE
T ss_pred CCcEEEEECCCCCCCCCCCCCCceeEEEEECCCCCCCEEEEEeCcceEEEC
Confidence 699999999999999955566888999999999989999999999999997
No 10
>PF00415 RCC1: Regulator of chromosome condensation (RCC1) repeat; InterPro: IPR000408 The regulator of chromosome condensation (RCC1) [] is a eukaryotic protein which binds to chromatin and interacts with ran, a nuclear GTP-binding protein IPR002041 from INTERPRO, to promote the loss of bound GDP and the uptake of fresh GTP, thus acting as a guanine-nucleotide dissociation stimulator (GDS). The interaction of RCC1 with ran probably plays an important role in the regulation of gene expression. RCC1, known as PRP20 or SRM1 in yeast, pim1 in fission yeast and BJ1 in Drosophila, is a protein that contains seven tandem repeats of a domain of about 50 to 60 amino acids. As shown in the following schematic representation, the repeats make up the major part of the length of the protein. Outside the repeat region, there is just a small N-terminal domain of about 40 to 50 residues and, in the Drosophila protein only, a C-terminal domain of about 130 residues. +----+-------+-------+-------+-------+-------+-------+-------+-------------+ |N-t.|Rpt. 1 |Rpt. 2 |Rpt. 3 |Rpt. 4 |Rpt. 5 |Rpt. 6 |Rpt. 7 | C-terminal | +----+-------+-------+-------+-------+-------+-------+-------+-------------+ The RCC1-type of repeat is also found in the X-linked retinitis pigmentosa GTPase regulator []. The RCC repeats form a beta-propeller structure.; PDB: 3MVD_L 3OF7_A 1I2M_D 1A12_B 3KCI_A 4DNV_B 4DNU_A 4D9S_B 4DNW_A.
Probab=99.24 E-value=5.7e-12 Score=83.23 Aligned_cols=49 Identities=33% Similarity=0.493 Sum_probs=42.6
Q ss_pred CCcEEEEeCCCCCccC-CCCCCCCCCCCccceeecCCCCC-CeEEEecCCCceEEE
Q 042844 26 GTAVVSFGDGSQGALG-LPTSLTGVGGDAYEPTRVPGLPS-DVTSVSAGHYHSLAV 79 (372)
Q Consensus 26 ~g~vy~wG~n~~gqLG-~~~~~~~~~~~~~~p~~i~~~~~-~i~~I~~G~~h~~~l 79 (372)
||+||+||.|.+|||| .+. .....+|++++.+.. +|++|+||..|+++|
T Consensus 1 dG~vy~wG~n~~GqLG~~~~-----~~~~~~P~~v~~~~~~~i~~va~G~~ht~~l 51 (51)
T PF00415_consen 1 DGRVYSWGSNDYGQLGSGGD-----NKNVSVPTKVPFLSGVRIVQVACGSDHTLAL 51 (51)
T ss_dssp TSEEEEEEEETTSTTSSSSS-----SSEEEEEEEEGGGTTSEEEEEEEESSEEEEE
T ss_pred CCcEEEEECCCCCCCCCCCC-----CCceeEEEEECCCCCCCEEEEEeCcceEEEC
Confidence 6899999999999999 444 467899999987654 699999999999987
No 11
>PF13540 RCC1_2: Regulator of chromosome condensation (RCC1) repeat; PDB: 3QI0_D 1JTD_B 3QHY_B.
Probab=99.17 E-value=3.3e-11 Score=69.39 Aligned_cols=30 Identities=43% Similarity=0.850 Sum_probs=26.0
Q ss_pred eEEEecCCCceEEEecCCcEEEEeCCCCCC
Q 042844 66 VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQ 95 (372)
Q Consensus 66 i~~I~~G~~h~~~lt~~G~v~~~G~n~~gq 95 (372)
|++|+||..|+++|+++|+||+||.|.+||
T Consensus 1 V~~ia~G~~ht~al~~~g~v~~wG~n~~GQ 30 (30)
T PF13540_consen 1 VVQIACGGYHTCALTSDGEVYCWGDNNYGQ 30 (30)
T ss_dssp EEEEEEESSEEEEEE-TTEEEEEE--TTST
T ss_pred CEEEEecCCEEEEEEcCCCEEEEcCCcCCC
Confidence 789999999999999999999999999987
No 12
>PF13540 RCC1_2: Regulator of chromosome condensation (RCC1) repeat; PDB: 3QI0_D 1JTD_B 3QHY_B.
Probab=99.16 E-value=4.6e-11 Score=68.79 Aligned_cols=30 Identities=47% Similarity=0.740 Sum_probs=26.0
Q ss_pred EEEEEecCCeeEEEecCCCEEEEeCCCCCc
Q 042844 266 VVDIACGFDHSLVLGRNGVLLSCGSNVYGQ 295 (372)
Q Consensus 266 i~~I~~G~~h~~alt~~G~vy~wG~n~~gq 295 (372)
|++|+||.+|++||+++|+||+||+|.+||
T Consensus 1 V~~ia~G~~ht~al~~~g~v~~wG~n~~GQ 30 (30)
T PF13540_consen 1 VVQIACGGYHTCALTSDGEVYCWGDNNYGQ 30 (30)
T ss_dssp EEEEEEESSEEEEEE-TTEEEEEE--TTST
T ss_pred CEEEEecCCEEEEEEcCCCEEEEcCCcCCC
Confidence 789999999999999999999999999987
No 13
>KOG0941 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.00 E-value=9.4e-12 Score=121.50 Aligned_cols=134 Identities=31% Similarity=0.530 Sum_probs=115.1
Q ss_pred CeEEEecCCCceEEEecCCcEEEEeCCCCCCCcCCCCCCCCccCCCceeecCCceeEEEEeecCcEEEEEeC-------C
Q 042844 65 DVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGD-------D 137 (372)
Q Consensus 65 ~i~~I~~G~~h~~~lt~~G~v~~~G~n~~gqlg~~~~~~~~~~~~p~~i~~~~~~~i~~i~~g~~~~~~lt~-------~ 137 (372)
.|.+++||.+|.++++..|++|.||.|.+||++++... .... |.+++.+++.+..+|+||..|+++++. +
T Consensus 15 ~~lq~~cGn~hclal~~~g~~~~wg~~~~g~~~~~~~~--~~~~-p~~~~sl~g~p~a~v~~g~~hs~~lS~~~~~lt~e 91 (850)
T KOG0941|consen 15 HILQVGCGNNHCLALSCAGELFVWGMNNNGQLGRALYF--PDAK-PEPVESLKGVPLAQVSAGEAHSFALSSHTVLLTDE 91 (850)
T ss_pred hhhhhccccHHHHhhhccCCeeeccCCccchhhhhccC--CCCC-CccchhhcCCcHHHHhcCCCcchhhhhchhhcchh
Confidence 69999999999999999999999999999999999333 2333 889999999999999999998888776 9
Q ss_pred CcEEEEeCCCCCCCCCCCCCcccccceEecccCCCcEEEEEecCCeEEEE-eCCCcEEEEeCCCCC
Q 042844 138 GSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQ-TEDGKLFGWGYSADG 202 (372)
Q Consensus 138 g~v~~~G~n~~gqlg~~~~~~~~~~p~~i~~~~~~~i~~I~~g~~~~~~l-t~~g~vy~wG~n~~g 202 (372)
|.++++|....||+|+... .....|..+..+-+..+..|+||..|++++ ..-|++|.+|.+..|
T Consensus 92 ~~~fs~Ga~~~~q~~h~~~-~~~~~~~~v~e~i~~~~t~ia~~~~ht~a~v~~l~qsf~~~~~~sG 156 (850)
T KOG0941|consen 92 GKVFSFGAGSTGQLGHSLT-ENEVLPLLVLELIGSRVTRIACVRGHTLAIVPRLGQSFSFGKGASG 156 (850)
T ss_pred ccccccCCccccccccccc-ccccccHHHHHHHhhhhHHHHHHHHHHHhhhhhhcceeecccCCCC
Confidence 9999999999999999533 556667777777778999999999888776 556889999988776
No 14
>KOG0941 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.97 E-value=6.7e-12 Score=122.49 Aligned_cols=176 Identities=26% Similarity=0.386 Sum_probs=132.3
Q ss_pred CceeecCCceeEEEEeecCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccccceEecccCCCcEEEEEecCCeEEEEeC
Q 042844 110 PKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTE 189 (372)
Q Consensus 110 p~~i~~~~~~~i~~i~~g~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~p~~i~~~~~~~i~~I~~g~~~~~~lt~ 189 (372)
|..+..+.-.++.++.||.+|+.+++..|++|+||.+.+||+|.+....... |..++.+.+.+..+|+||.+|+++++.
T Consensus 5 ~~~~~~l~~k~~lq~~cGn~hclal~~~g~~~~wg~~~~g~~~~~~~~~~~~-p~~~~sl~g~p~a~v~~g~~hs~~lS~ 83 (850)
T KOG0941|consen 5 PRLVLILNYKHILQVGCGNNHCLALSCAGELFVWGMNNNGQLGRALYFPDAK-PEPVESLKGVPLAQVSAGEAHSFALSS 83 (850)
T ss_pred hHHHHHHhhhhhhhhccccHHHHhhhccCCeeeccCCccchhhhhccCCCCC-CccchhhcCCcHHHHhcCCCcchhhhh
Confidence 4445555567899999999999999999999999999999999995545555 999999999999999999999988877
Q ss_pred -------CCcEEEEeCCCCCCCCCCCCCCcCCCCCCCcCCCCCCccccchhhHHHhhhhhhcccccccCCCceeceeeec
Q 042844 190 -------DGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVE 262 (372)
Q Consensus 190 -------~g~vy~wG~n~~gqlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~ 262 (372)
+|.++.+|....+|+|+.-...+. .|..+.
T Consensus 84 ~~~~lt~e~~~fs~Ga~~~~q~~h~~~~~~~-------------------------------------------~~~~v~ 120 (850)
T KOG0941|consen 84 HTVLLTDEGKVFSFGAGSTGQLGHSLTENEV-------------------------------------------LPLLVL 120 (850)
T ss_pred chhhcchhccccccCCccccccccccccccc-------------------------------------------ccHHHH
Confidence 999999999999999984111111 122222
Q ss_pred ---CccEEEEEecCCeeEEEec-CCCEEEEeCCCCC--ccCCCCCC--CcccceeeccccEEEecCCCceEEEEe
Q 042844 263 ---GVEVVDIACGFDHSLVLGR-NGVLLSCGSNVYG--QLGREKQD--MGMFPVDINFHPVSISSGLGHSLAICE 329 (372)
Q Consensus 263 ---~~~i~~I~~G~~h~~alt~-~G~vy~wG~n~~g--qlG~~~~~--~~~~P~~v~~~i~~ia~G~~~s~~l~~ 329 (372)
...+.+|+||..|+++.-. -|++|..|.+..| ++-..... ....-.++...+..+++|.+.++.+..
T Consensus 121 e~i~~~~t~ia~~~~ht~a~v~~l~qsf~~~~~~sGk~~i~s~s~~~~l~~~d~~~~~~~~~~~~g~dq~~~l~~ 195 (850)
T KOG0941|consen 121 ELIGSRVTRIACVRGHTLAIVPRLGQSFSFGKGASGKGVIVSLSGEDLLRDHDSEKDHRCSLAFAGGDQTFSLSS 195 (850)
T ss_pred HHHhhhhHHHHHHHHHHHhhhhhhcceeecccCCCCCceeeccchhhhcccccHHHHHHHHHHhcCCCceEEEEe
Confidence 6778999999999998864 6899999988776 11000000 000111222456778999999998887
No 15
>KOG3669 consensus Uncharacterized conserved protein, contains dysferlin, TECPR and PH domains [General function prediction only]
Probab=95.69 E-value=0.86 Score=44.31 Aligned_cols=108 Identities=19% Similarity=0.216 Sum_probs=68.2
Q ss_pred cCCCceEEEecCCcEEEEeCCCCCCCcCCCCCCCCccCCCceeecCCceeEEEEeecC-cEEEEEeCCCcEE-EEeCCCC
Q 042844 71 AGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASG-VVSSAIGDDGSLW-VWGKSKR 148 (372)
Q Consensus 71 ~G~~h~~~lt~~G~v~~~G~n~~gqlg~~~~~~~~~~~~p~~i~~~~~~~i~~i~~g~-~~~~~lt~~g~v~-~~G~n~~ 148 (372)
.|+.-..||.++|++|. +-|.....+.. ..=+.+. +..++.+|++|. .-..+++.+|.|| --|-.++
T Consensus 190 ~g~~~awAI~s~Gd~y~-------RtGvs~~~P~G--raW~~i~--~~t~L~qISagPtg~VwAvt~nG~vf~R~GVsRq 258 (705)
T KOG3669|consen 190 LGDDTAWAIRSSGDLYL-------RTGVSVDRPCG--RAWKVIC--PYTDLSQISAGPTGVVWAVTENGAVFYREGVSRQ 258 (705)
T ss_pred CCceEEEEEecCCcEEE-------eccccCCCCCC--ceeeecC--CCCccceEeecCcceEEEEeeCCcEEEEeccccc
Confidence 44555567888888875 22222222110 1111111 112588899998 6688999999976 4566666
Q ss_pred CCCCCCCCCcccccceEecccCCCcEEEEEecCCeEEEEeCCCcEEEE
Q 042844 149 GQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGW 196 (372)
Q Consensus 149 gqlg~~~~~~~~~~p~~i~~~~~~~i~~I~~g~~~~~~lt~~g~vy~w 196 (372)
.+.|.. -....+|.... .++.|+.|.....+||++|++|+=
T Consensus 259 Np~Gds--WkdI~tP~~a~-----~~v~iSvGt~t~Waldndg~lwfr 299 (705)
T KOG3669|consen 259 NPEGDS--WKDIVTPRQAL-----EPVCISVGTQTLWALDNDGNLWFR 299 (705)
T ss_pred CCCCch--hhhccCccccc-----ceEEEEeccceEEEEecCCcEEEE
Confidence 666643 22333443332 389999999999999999999864
No 16
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=95.59 E-value=1.4 Score=44.38 Aligned_cols=241 Identities=15% Similarity=0.157 Sum_probs=135.0
Q ss_pred hhcceeeeee--EEEEeeCCCcEEEEeCCCCCccCCCCCCCCCCCCccceeecCCCCCCeEEEecCCCceEEEe--cCCc
Q 042844 9 HNHVNVLTSR--IFMRSASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVT--NNGA 84 (372)
Q Consensus 9 ~~~~~~~~~~--~~~~l~~~g~vy~wG~n~~gqLG~~~~~~~~~~~~~~p~~i~~~~~~i~~I~~G~~h~~~lt--~~G~ 84 (372)
-+|.+..+.+ ..+.++..|.-.++|...-|||.+=.=+. ..+.-.+..++ .++..++-...-.++.| +||+
T Consensus 299 lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqs----EsYVlKQQgH~-~~i~~l~YSpDgq~iaTG~eDgK 373 (893)
T KOG0291|consen 299 LIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQS----ESYVLKQQGHS-DRITSLAYSPDGQLIATGAEDGK 373 (893)
T ss_pred EEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeec----cceeeeccccc-cceeeEEECCCCcEEEeccCCCc
Confidence 3566666633 34566677999999999999998865221 12221122222 45666665555444443 6777
Q ss_pred EEEEeCCCCCCCcCCCCCCCCccCCCceeecCCceeEEEEeecCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccccce
Q 042844 85 VWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPS 164 (372)
Q Consensus 85 v~~~G~n~~gqlg~~~~~~~~~~~~p~~i~~~~~~~i~~i~~g~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~p~ 164 (372)
|=.|-....-++-+ .-+....+..+++..-.+..+..+-||.|-.|-..+|- .......|.
T Consensus 374 VKvWn~~SgfC~vT-------------FteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYr------NfRTft~P~ 434 (893)
T KOG0291|consen 374 VKVWNTQSGFCFVT-------------FTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYR------NFRTFTSPE 434 (893)
T ss_pred EEEEeccCceEEEE-------------eccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccc------eeeeecCCC
Confidence 77776433222111 11223456777888888888888899999999876542 212223344
Q ss_pred EecccCCCcEEEEEecCCeEEEEeCCCcEEEEeCCCCCCCCCCCCCCcCCCCCCCcCCCCCCccccchhhHHHhhhhhhc
Q 042844 165 RVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSE 244 (372)
Q Consensus 165 ~i~~~~~~~i~~I~~g~~~~~~lt~~g~vy~wG~n~~gqlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (372)
+++ ..+++++..|.|.+-|.-..-
T Consensus 435 p~Q--------------fscvavD~sGelV~AG~~d~F------------------------------------------ 458 (893)
T KOG0291|consen 435 PIQ--------------FSCVAVDPSGELVCAGAQDSF------------------------------------------ 458 (893)
T ss_pred cee--------------eeEEEEcCCCCEEEeeccceE------------------------------------------
Confidence 433 134677777777776642110
Q ss_pred ccccccCCCceeceeeecCccEEEEEecCC---eeEEEec----------CCCEEEEeCCCCCccCCCCCCCcccceeec
Q 042844 245 GMEKEKYMPIIWEPFLVEGVEVVDIACGFD---HSLVLGR----------NGVLLSCGSNVYGQLGREKQDMGMFPVDIN 311 (372)
Q Consensus 245 ~~~~~~~~~~~~~p~~i~~~~i~~I~~G~~---h~~alt~----------~G~vy~wG~n~~gqlG~~~~~~~~~P~~v~ 311 (372)
..+.|.-+ ..++.+|-.|.. +.+...- |..|-.|---. ......|.++.
T Consensus 459 -------~IfvWS~q---TGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~--------s~~~vEtl~i~ 520 (893)
T KOG0291|consen 459 -------EIFVWSVQ---TGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFS--------SSGTVETLEIR 520 (893)
T ss_pred -------EEEEEEee---cCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeec--------cCceeeeEeec
Confidence 00011000 112222222221 2222333 33444444211 11223677888
Q ss_pred cccEEEecC--CCceEEEEeeccccccCCCccEEEecCCCCCCccCC
Q 042844 312 FHPVSISSG--LGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRM 356 (372)
Q Consensus 312 ~~i~~ia~G--~~~s~~l~~~~~~~~~~~~g~v~~wG~n~~gqLG~~ 356 (372)
..+..|+.- ..-.++.|- ||++-.|-.++..|+|.=
T Consensus 521 sdvl~vsfrPdG~elaVaTl---------dgqItf~d~~~~~q~~~I 558 (893)
T KOG0291|consen 521 SDVLAVSFRPDGKELAVATL---------DGQITFFDIKEAVQVGSI 558 (893)
T ss_pred cceeEEEEcCCCCeEEEEEe---------cceEEEEEhhhceeeccc
Confidence 888888776 666778888 999999999999999553
No 17
>KOG3669 consensus Uncharacterized conserved protein, contains dysferlin, TECPR and PH domains [General function prediction only]
Probab=94.36 E-value=0.62 Score=45.26 Aligned_cols=108 Identities=23% Similarity=0.207 Sum_probs=70.7
Q ss_pred ecCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccccceEecccCCCcEEEEEecC-CeEEEEeCCCcEEE-EeCCCCCC
Q 042844 126 ASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGW-GHALAQTEDGKLFG-WGYSADGR 203 (372)
Q Consensus 126 ~g~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~p~~i~~~~~~~i~~I~~g~-~~~~~lt~~g~vy~-wG~n~~gq 203 (372)
.|.....||..+|.+|. +-|..........-..+... .++.+|++|. ....||+.+|+||. -|....++
T Consensus 190 ~g~~~awAI~s~Gd~y~-------RtGvs~~~P~GraW~~i~~~--t~L~qISagPtg~VwAvt~nG~vf~R~GVsRqNp 260 (705)
T KOG3669|consen 190 LGDDTAWAIRSSGDLYL-------RTGVSVDRPCGRAWKVICPY--TDLSQISAGPTGVVWAVTENGAVFYREGVSRQNP 260 (705)
T ss_pred CCceEEEEEecCCcEEE-------eccccCCCCCCceeeecCCC--CccceEeecCcceEEEEeeCCcEEEEecccccCC
Confidence 55666778888998886 23333332222222222222 2588999999 88999999999764 67776666
Q ss_pred CCCCCCCCcCCCCCCCcCCCCCCccccchhhHHHhhhhhhcccccccCCCceeceeeecCccEEEEEecCCeeEEEecCC
Q 042844 204 IGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNG 283 (372)
Q Consensus 204 lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~i~~I~~G~~h~~alt~~G 283 (372)
.|..=.. .+.+.....++.|+.|....-||+.+|
T Consensus 261 ~GdsWkd----------------------------------------------I~tP~~a~~~v~iSvGt~t~Waldndg 294 (705)
T KOG3669|consen 261 EGDSWKD----------------------------------------------IVTPRQALEPVCISVGTQTLWALDNDG 294 (705)
T ss_pred CCchhhh----------------------------------------------ccCcccccceEEEEeccceEEEEecCC
Confidence 6654000 011111334899999999999999999
Q ss_pred CEEEE
Q 042844 284 VLLSC 288 (372)
Q Consensus 284 ~vy~w 288 (372)
++|.-
T Consensus 295 ~lwfr 299 (705)
T KOG3669|consen 295 NLWFR 299 (705)
T ss_pred cEEEE
Confidence 99863
No 18
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others. It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas [].
Probab=94.04 E-value=0.38 Score=52.40 Aligned_cols=67 Identities=13% Similarity=0.064 Sum_probs=46.3
Q ss_pred CccEEEEEecCC-eeEEEecCCCEEEEeCCCCCccCCC-CCCCcccceeec--cccEEEecCCCceEEEEe
Q 042844 263 GVEVVDIACGFD-HSLVLGRNGVLLSCGSNVYGQLGRE-KQDMGMFPVDIN--FHPVSISSGLGHSLAICE 329 (372)
Q Consensus 263 ~~~i~~I~~G~~-h~~alt~~G~vy~wG~n~~gqlG~~-~~~~~~~P~~v~--~~i~~ia~G~~~s~~l~~ 329 (372)
.-+|++|+.-.. .-+|++.+|++|..-.-..-+.-.+ .....+.|+.++ .++..+....+|...+.-
T Consensus 743 ~G~ik~l~lD~~~nL~Alt~~G~Lf~~~k~~WQ~~~~~~~~~~~W~~v~lP~~~~v~~l~~~~~~~l~~~~ 813 (1774)
T PF11725_consen 743 SGEIKDLALDEKQNLYALTSTGELFRLPKEAWQGNAEGDQMAAKWQKVALPDEQPVKSLRTNDDNHLSAQI 813 (1774)
T ss_pred CcchhheeeccccceeEecCCCceeecCHHHhhCcccCCccccCceeccCCCCCchhhhhcCCCCceEEEe
Confidence 578999998876 5568899999997654332222122 123455666655 789999999999888876
No 19
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=93.64 E-value=0.0053 Score=63.40 Aligned_cols=134 Identities=19% Similarity=0.233 Sum_probs=88.1
Q ss_pred CeEEEecCCCceEEEecCCcEEEEeCCCCCCCcCCCCCCCCccCCCc-eeecCCceeEEEEeecCcEEEEEeCCCcEEEE
Q 042844 65 DVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPK-RVEGLDQVNVCAAFASGVVSSAIGDDGSLWVW 143 (372)
Q Consensus 65 ~i~~I~~G~~h~~~lt~~G~v~~~G~n~~gqlg~~~~~~~~~~~~p~-~i~~~~~~~i~~i~~g~~~~~~lt~~g~v~~~ 143 (372)
+++.|-+-.+.-++|..+|++|.|-+...--+-....... ...-|. .+-.+.+.+|+.+++..--.-++|++|+|.+|
T Consensus 375 ~~I~I~A~s~el~AlhrkGelYqWaWdESEglddplai~k-n~dHPd~a~iG~hge~ii~lSanniR~si~T~nghlasW 453 (3015)
T KOG0943|consen 375 KFICIGALSSELLALHRKGELYQWAWDESEGLDDPLAINK-NLDHPDAAFIGLHGEKIILLSANNIRASIATENGHLASW 453 (3015)
T ss_pred eeEEeehhHHHHHHHhhCCceeeeecccccCCCChhhccc-CCCCCccceecccCCeeEEeecCceeeeeeecCCchhhH
Confidence 4667766677779999999999998775433322111111 111222 22345667999999999999999999999999
Q ss_pred eCCCCCCCCCCCCCccccc-ceEecccCCCcEEEEEecCCeEEEEeCCCcEEEEeCCCCCCC
Q 042844 144 GKSKRGQLGLGKDITEAIV-PSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRI 204 (372)
Q Consensus 144 G~n~~gqlg~~~~~~~~~~-p~~i~~~~~~~i~~I~~g~~~~~~lt~~g~vy~wG~n~~gql 204 (372)
=. .+|.+....-..+ -+.+ ...++.+++..|...|++|...++-+|-||...+.+.
T Consensus 454 lD----EcgagV~fkLa~ea~Tki-eed~~maVqd~~~adhlaAf~~dniihWcGiVPf~es 510 (3015)
T KOG0943|consen 454 LD----ECGAGVAFKLAHEAQTKI-EEDGEMAVQDHCCADHLAAFLEDNIIHWCGIVPFSES 510 (3015)
T ss_pred Hh----hhhhhhhhhhhhhhhhhh-hhhhHHHHHHHHHHHHHHHHhhhceeeEEeeeeehhh
Confidence 43 2232222111111 1122 2445678888899999999999999999998765553
No 20
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=92.26 E-value=7.5 Score=34.15 Aligned_cols=70 Identities=11% Similarity=0.188 Sum_probs=38.7
Q ss_pred CceeEEEEeecCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccccceEecccCCCcEEEE--EecCCeEEEEeCCCcEE
Q 042844 117 DQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKV--SFGWGHALAQTEDGKLF 194 (372)
Q Consensus 117 ~~~~i~~i~~g~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~p~~i~~~~~~~i~~I--~~g~~~~~~lt~~g~vy 194 (372)
+++..+.+.|-..-.+-=++||.+-.|--.. ..-++..... ..|..| .-...+.+.=+.+|+|+
T Consensus 84 kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~------------~~~qR~~~~~--spVn~vvlhpnQteLis~dqsg~ir 149 (311)
T KOG0315|consen 84 KNVTAVGFQCDGRWMYTGSEDGTVKIWDLRS------------LSCQRNYQHN--SPVNTVVLHPNQTELISGDQSGNIR 149 (311)
T ss_pred CceEEEEEeecCeEEEecCCCceEEEEeccC------------cccchhccCC--CCcceEEecCCcceEEeecCCCcEE
Confidence 4455555555555455556788888886422 1111111111 223333 33455667778899999
Q ss_pred EEeCCC
Q 042844 195 GWGYSA 200 (372)
Q Consensus 195 ~wG~n~ 200 (372)
+|-...
T Consensus 150 vWDl~~ 155 (311)
T KOG0315|consen 150 VWDLGE 155 (311)
T ss_pred EEEccC
Confidence 998643
No 21
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=91.18 E-value=5.8 Score=42.71 Aligned_cols=172 Identities=15% Similarity=0.125 Sum_probs=88.0
Q ss_pred EEeeCCCcEEEEeCCCCCccCCCCCCCCCCCCccceeecCCCCCCeEEEecCCCceEEEecCCcEEEEeCCCCCC-CcCC
Q 042844 21 MRSASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQ-LGRG 99 (372)
Q Consensus 21 ~~l~~~g~vy~wG~n~~gqLG~~~~~~~~~~~~~~p~~i~~~~~~i~~I~~G~~h~~~lt~~G~v~~~G~n~~gq-lg~~ 99 (372)
+=++.|+++|.|=.|+.+++..-+.. ..+-..+.....+.--..--=.|-++|.+-=+|+..|....-. .+..
T Consensus 93 aWiTiDn~L~lWny~~~~e~~~~d~~------shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~ 166 (1311)
T KOG1900|consen 93 AWITIDNNLFLWNYESDNELAEYDGL------SHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELS 166 (1311)
T ss_pred eEEEeCCeEEEEEcCCCCccccccch------hhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCccc
Confidence 34679999999999987777665421 1111122111111000111125789999999999988433221 1111
Q ss_pred CCCCCCccCCCceeecCCceeEEEEeecCcEEEEEe-CCCcEEE----EeCCCCCCC----CCCCCCcccccceEeccc-
Q 042844 100 ALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIG-DDGSLWV----WGKSKRGQL----GLGKDITEAIVPSRVEAL- 169 (372)
Q Consensus 100 ~~~~~~~~~~p~~i~~~~~~~i~~i~~g~~~~~~lt-~~g~v~~----~G~n~~gql----g~~~~~~~~~~p~~i~~~- 169 (372)
... .-..+ ...+..+.+|.+..+.-++++ .||.||- .+.+.+++. -.+........|..+...
T Consensus 167 ~f~------~~~~i-~~dg~~V~~I~~t~nGRIF~~G~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~ 239 (1311)
T KOG1900|consen 167 IFN------TSFKI-SVDGVSVNCITYTENGRIFFAGRDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPG 239 (1311)
T ss_pred ccc------cceee-ecCCceEEEEEeccCCcEEEeecCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCC
Confidence 111 11111 123556666665555444554 5555542 233333331 111122233456633322
Q ss_pred -CCCcEEEEEecCCeEE--EEeCCCcEEEEeCCCCCCCC
Q 042844 170 -AGEKIVKVSFGWGHAL--AQTEDGKLFGWGYSADGRIG 205 (372)
Q Consensus 170 -~~~~i~~I~~g~~~~~--~lt~~g~vy~wG~n~~gqlg 205 (372)
..+.|++|+......+ +++++|.|-+|-....|+-+
T Consensus 240 ~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~~G~~~ 278 (1311)
T KOG1900|consen 240 SSKDPIRQITIDNSRNILYVLSEKGTVSAYDIGGNGLGG 278 (1311)
T ss_pred CCCCcceeeEeccccceeeeeccCceEEEEEccCCCccc
Confidence 2567999999877654 56777887777655444433
No 22
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=89.02 E-value=0.07 Score=55.66 Aligned_cols=127 Identities=23% Similarity=0.239 Sum_probs=83.6
Q ss_pred CceeEEEEeecCcEEEEEeCCCcEEEEeCCCCCCCCCCCCC-cccccceEe-cccCCCcEEEEEecCCeEEEEeCCCcEE
Q 042844 117 DQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDI-TEAIVPSRV-EALAGEKIVKVSFGWGHALAQTEDGKLF 194 (372)
Q Consensus 117 ~~~~i~~i~~g~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~-~~~~~p~~i-~~~~~~~i~~I~~g~~~~~~lt~~g~vy 194 (372)
+..++++|.+-.+..++|..+|++|.|--...--|-..... .+...|... ..+.+++|+.+++..-..-++|++|+|-
T Consensus 372 dan~~I~I~A~s~el~AlhrkGelYqWaWdESEglddplai~kn~dHPd~a~iG~hge~ii~lSanniR~si~T~nghla 451 (3015)
T KOG0943|consen 372 DANKFICIGALSSELLALHRKGELYQWAWDESEGLDDPLAINKNLDHPDAAFIGLHGEKIILLSANNIRASIATENGHLA 451 (3015)
T ss_pred CCCeeEEeehhHHHHHHHhhCCceeeeecccccCCCChhhcccCCCCCccceecccCCeeEEeecCceeeeeeecCCchh
Confidence 34578999888888999999999999975443222211110 111122221 2355789999999999999999999999
Q ss_pred EEeCC----CCCCCCCCCCCCcCCCCCCCcCCCCCCccccchhhHHHhhhhhhcccccccCCCceeceeeec--CccEEE
Q 042844 195 GWGYS----ADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVE--GVEVVD 268 (372)
Q Consensus 195 ~wG~n----~~gqlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~--~~~i~~ 268 (372)
.|=.- ....|-.. .-+.++ ...+++
T Consensus 452 sWlDEcgagV~fkLa~e-------------------------------------------------a~Tkieed~~maVq 482 (3015)
T KOG0943|consen 452 SWLDECGAGVAFKLAHE-------------------------------------------------AQTKIEEDGEMAVQ 482 (3015)
T ss_pred hHHhhhhhhhhhhhhhh-------------------------------------------------hhhhhhhhhHHHHH
Confidence 99542 11111100 011111 456777
Q ss_pred EEecCCeeEEEecCCCEEEEeCCC
Q 042844 269 IACGFDHSLVLGRNGVLLSCGSNV 292 (372)
Q Consensus 269 I~~G~~h~~alt~~G~vy~wG~n~ 292 (372)
..|...|.+|..+|.-+|-||--.
T Consensus 483 d~~~adhlaAf~~dniihWcGiVP 506 (3015)
T KOG0943|consen 483 DHCCADHLAAFLEDNIIHWCGIVP 506 (3015)
T ss_pred HHHHHHHHHHHhhhceeeEEeeee
Confidence 788888999999999999999443
No 23
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=85.26 E-value=37 Score=32.69 Aligned_cols=70 Identities=9% Similarity=0.113 Sum_probs=40.3
Q ss_pred CCeEEEecCC-CceEEEecCCcEEEEeCCCCCCCcCCCCCCCCccCCCceee--cCCceeEEEEeecCcEEEEEeCCCcE
Q 042844 64 SDVTSVSAGH-YHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVE--GLDQVNVCAAFASGVVSSAIGDDGSL 140 (372)
Q Consensus 64 ~~i~~I~~G~-~h~~~lt~~G~v~~~G~n~~gqlg~~~~~~~~~~~~p~~i~--~~~~~~i~~i~~g~~~~~~lt~~g~v 140 (372)
.+|+.+.--. .+-++|.+||.++... -+|.. . ...+..+. .....++-.+..+..-.++|+.++++
T Consensus 81 ~~iv~~~wt~~e~LvvV~~dG~v~vy~--~~G~~---~------fsl~~~i~~~~v~e~~i~~~~~~~~GivvLt~~~~~ 149 (410)
T PF04841_consen 81 GRIVGMGWTDDEELVVVQSDGTVRVYD--LFGEF---Q------FSLGEEIEEEKVLECRIFAIWFYKNGIVVLTGNNRF 149 (410)
T ss_pred CCEEEEEECCCCeEEEEEcCCEEEEEe--CCCce---e------echhhhccccCcccccccccccCCCCEEEECCCCeE
Confidence 4677766544 5668899999888763 22222 0 01111111 11122333445566678999999999
Q ss_pred EEEe
Q 042844 141 WVWG 144 (372)
Q Consensus 141 ~~~G 144 (372)
|..=
T Consensus 150 ~~v~ 153 (410)
T PF04841_consen 150 YVVN 153 (410)
T ss_pred EEEe
Confidence 9873
No 24
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=83.26 E-value=6.4 Score=34.27 Aligned_cols=32 Identities=25% Similarity=0.415 Sum_probs=27.6
Q ss_pred CCCCeEEEecCCCceEEEecCCcEEEEeCCCC
Q 042844 62 LPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNE 93 (372)
Q Consensus 62 ~~~~i~~I~~G~~h~~~lt~~G~v~~~G~n~~ 93 (372)
++.++..+.|-+++-++||++|.+|.|-....
T Consensus 11 Lgs~~~~l~~~~~~Ll~iT~~G~l~vWnl~~~ 42 (219)
T PF07569_consen 11 LGSPVSFLECNGSYLLAITSSGLLYVWNLKKG 42 (219)
T ss_pred cCCceEEEEeCCCEEEEEeCCCeEEEEECCCC
Confidence 44688899999999999999999999986543
No 25
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=82.04 E-value=7.9 Score=33.68 Aligned_cols=35 Identities=23% Similarity=0.289 Sum_probs=29.0
Q ss_pred eeeecCccEEEEEecCCeeEEEecCCCEEEEeCCC
Q 042844 258 PFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNV 292 (372)
Q Consensus 258 p~~i~~~~i~~I~~G~~h~~alt~~G~vy~wG~n~ 292 (372)
|..+-..+++.+.|-..+.+|+|++|.+|+|--..
T Consensus 7 P~i~Lgs~~~~l~~~~~~Ll~iT~~G~l~vWnl~~ 41 (219)
T PF07569_consen 7 PPIVLGSPVSFLECNGSYLLAITSSGLLYVWNLKK 41 (219)
T ss_pred CcEecCCceEEEEeCCCEEEEEeCCCeEEEEECCC
Confidence 44444778899999999999999999999998554
No 26
>smart00706 TECPR Beta propeller repeats in Physarum polycephalum tectonins, Limulus lectin L-6 and animal hypothetical proteins.
Probab=81.25 E-value=3.9 Score=23.83 Aligned_cols=25 Identities=28% Similarity=0.449 Sum_probs=22.3
Q ss_pred CcEEEEEecC-CeEEEEeCCCcEEEE
Q 042844 172 EKIVKVSFGW-GHALAQTEDGKLFGW 196 (372)
Q Consensus 172 ~~i~~I~~g~-~~~~~lt~~g~vy~w 196 (372)
.++++|++|. +...+++.+|+||..
T Consensus 8 g~l~~isvg~~~~vW~V~~~g~i~~r 33 (35)
T smart00706 8 GELVQVSVGPSDTVWAVNSDGNIYRR 33 (35)
T ss_pred CCEEEEEECCCCeEEEEcCCCCEEEE
Confidence 4689999999 999999999999963
No 27
>smart00706 TECPR Beta propeller repeats in Physarum polycephalum tectonins, Limulus lectin L-6 and animal hypothetical proteins.
Probab=78.84 E-value=5 Score=23.33 Aligned_cols=25 Identities=24% Similarity=0.431 Sum_probs=22.3
Q ss_pred CCeEEEecCC-CceEEEecCCcEEEE
Q 042844 64 SDVTSVSAGH-YHSLAVTNNGAVWAW 88 (372)
Q Consensus 64 ~~i~~I~~G~-~h~~~lt~~G~v~~~ 88 (372)
.++++|++|. ....+++.+|++|..
T Consensus 8 g~l~~isvg~~~~vW~V~~~g~i~~r 33 (35)
T smart00706 8 GELVQVSVGPSDTVWAVNSDGNIYRR 33 (35)
T ss_pred CCEEEEEECCCCeEEEEcCCCCEEEE
Confidence 6899999999 888999999999863
No 28
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others. It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas [].
Probab=77.65 E-value=21 Score=39.75 Aligned_cols=109 Identities=22% Similarity=0.261 Sum_probs=67.1
Q ss_pred eecCCceeEEEEe-ecCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccccceEec--ccCCCcEEEEEecCCe-EEEEe
Q 042844 113 VEGLDQVNVCAAF-ASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVE--ALAGEKIVKVSFGWGH-ALAQT 188 (372)
Q Consensus 113 i~~~~~~~i~~i~-~g~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~p~~i~--~~~~~~i~~I~~g~~~-~~~lt 188 (372)
++.+++..|..++ .+.+++++|++.|+|-..=. ...|..+. .+. -+|++|++-..| ..|++
T Consensus 697 l~Gl~~~~i~a~Avv~~~~fvald~qg~lt~h~k--------------~g~p~~l~~~gl~-G~ik~l~lD~~~nL~Alt 761 (1774)
T PF11725_consen 697 LEGLEDRVITAFAVVNDNKFVALDDQGDLTAHQK--------------PGRPVPLSRPGLS-GEIKDLALDEKQNLYALT 761 (1774)
T ss_pred ccCCCcCcceeEEEEcCCceEEeccCCccccccC--------------CCCCccCCCCCCC-cchhheeeccccceeEec
Confidence 3444543444332 35677889999988876421 11133333 343 379999998774 67889
Q ss_pred CCCcEEEEe-----CCCCCCCCCCCCCCcCCCCCCCcCCCCCCccccchhhHHHhhhhhhcccccccCCCceeceeeec-
Q 042844 189 EDGKLFGWG-----YSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVE- 262 (372)
Q Consensus 189 ~~g~vy~wG-----~n~~gqlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~- 262 (372)
.+|.||..- .+..+ ......|.|...+
T Consensus 762 ~~G~Lf~~~k~~WQ~~~~~-----------------------------------------------~~~~~~W~~v~lP~ 794 (1774)
T PF11725_consen 762 STGELFRLPKEAWQGNAEG-----------------------------------------------DQMAAKWQKVALPD 794 (1774)
T ss_pred CCCceeecCHHHhhCcccC-----------------------------------------------CccccCceeccCCC
Confidence 999999743 22211 0111236666666
Q ss_pred CccEEEEEecCCeeEEEecCC
Q 042844 263 GVEVVDIACGFDHSLVLGRNG 283 (372)
Q Consensus 263 ~~~i~~I~~G~~h~~alt~~G 283 (372)
..++..+....+|.+.+.-++
T Consensus 795 ~~~v~~l~~~~~~~l~~~~~d 815 (1774)
T PF11725_consen 795 EQPVKSLRTNDDNHLSAQIED 815 (1774)
T ss_pred CCchhhhhcCCCCceEEEecC
Confidence 778889988888888876544
No 29
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=77.09 E-value=52 Score=29.11 Aligned_cols=62 Identities=15% Similarity=0.258 Sum_probs=37.6
Q ss_pred cCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccccceEecccCCCcEEEEEecCC--eEEEEeCCCcEEEEeCCC
Q 042844 127 SGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWG--HALAQTEDGKLFGWGYSA 200 (372)
Q Consensus 127 g~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~p~~i~~~~~~~i~~I~~g~~--~~~~lt~~g~vy~wG~n~ 200 (372)
...+-+.=+.+|.|++|-...+ .......|... ..|.+++...+ -.+|.++.|+.|+|-.-.
T Consensus 135 nQteLis~dqsg~irvWDl~~~-------~c~~~liPe~~-----~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~ 198 (311)
T KOG0315|consen 135 NQTELISGDQSGNIRVWDLGEN-------SCTHELIPEDD-----TSIQSLTVMPDGSMLAAANNKGNCYVWRLLN 198 (311)
T ss_pred CcceEEeecCCCcEEEEEccCC-------ccccccCCCCC-----cceeeEEEcCCCcEEEEecCCccEEEEEccC
Confidence 3334455567799999975332 11222233222 35777776655 456778999999998743
No 30
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=76.51 E-value=1.2e+02 Score=32.81 Aligned_cols=29 Identities=24% Similarity=0.334 Sum_probs=23.9
Q ss_pred CCCCeEEEecCCCc--eEEEecCCcEEEEeC
Q 042844 62 LPSDVTSVSAGHYH--SLAVTNNGAVWAWGR 90 (372)
Q Consensus 62 ~~~~i~~I~~G~~h--~~~lt~~G~v~~~G~ 90 (372)
++..|.+|+....+ .++|+.||.|..|-.
T Consensus 425 ~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~ 455 (928)
T PF04762_consen 425 LPSPVNDVAFSPSNSRFAVLTSDGSLSIYEW 455 (928)
T ss_pred CCCCcEEEEEeCCCCeEEEEECCCCEEEEEe
Confidence 44679999999998 799999998776653
No 31
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=76.10 E-value=76 Score=30.49 Aligned_cols=29 Identities=24% Similarity=0.357 Sum_probs=17.4
Q ss_pred CcEEEEEecCCeEEEE--eCCCcEEEEeCCC
Q 042844 172 EKIVKVSFGWGHALAQ--TEDGKLFGWGYSA 200 (372)
Q Consensus 172 ~~i~~I~~g~~~~~~l--t~~g~vy~wG~n~ 200 (372)
..|..++-..+-++.+ +++|+|-+|-..+
T Consensus 278 ~~ITcLais~DgtlLlSGd~dg~VcvWdi~S 308 (476)
T KOG0646|consen 278 SAITCLAISTDGTLLLSGDEDGKVCVWDIYS 308 (476)
T ss_pred cceeEEEEecCccEEEeeCCCCCEEEEecch
Confidence 3566666555655555 4566777776543
No 32
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=76.06 E-value=54 Score=29.54 Aligned_cols=140 Identities=19% Similarity=0.291 Sum_probs=77.6
Q ss_pred eeeEEEEeeCCCcEEEEeCCCCCccCCCCCCCCCCCCccceeecCCCCCCeEEEecCC---CceEEEecCCcEEEEeCCC
Q 042844 16 TSRIFMRSASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGH---YHSLAVTNNGAVWAWGRNN 92 (372)
Q Consensus 16 ~~~~~~~l~~~g~vy~wG~n~~gqLG~~~~~~~~~~~~~~p~~i~~~~~~i~~I~~G~---~h~~~lt~~G~v~~~G~n~ 92 (372)
+.-|-++...||.||.-+.. .+.+|+-+.. ..+++.+..|. -|.+++..||..|.+-...
T Consensus 62 ~ap~dvapapdG~VWft~qg-~gaiGhLdP~----------------tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~ 124 (353)
T COG4257 62 SAPFDVAPAPDGAVWFTAQG-TGAIGHLDPA----------------TGEVETYPLGSGASPHGIVVGPDGSAWITDTGL 124 (353)
T ss_pred CCccccccCCCCceEEecCc-cccceecCCC----------------CCceEEEecCCCCCCceEEECCCCCeeEecCcc
Confidence 34456677789999977653 2344443311 13455555544 5778888899988886542
Q ss_pred CCCCcCCCCCCCCccCCCceeecCCceeEEEEeecCcEEEEEeCCCcEEEEeCCC-CCCCCCCCCCcccccceEecccCC
Q 042844 93 EVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSK-RGQLGLGKDITEAIVPSRVEALAG 171 (372)
Q Consensus 93 ~gqlg~~~~~~~~~~~~p~~i~~~~~~~i~~i~~g~~~~~~lt~~g~v~~~G~n~-~gqlg~~~~~~~~~~p~~i~~~~~ 171 (372)
.+++-..+. ...+.++. -.+..-.+-.+++++.+|+||.-|.+. +|+|--...... ..|.+
T Consensus 125 --aI~R~dpkt----~evt~f~l-----p~~~a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~-vfpaP------ 186 (353)
T COG4257 125 --AIGRLDPKT----LEVTRFPL-----PLEHADANLETAVFDPWGNLWFTGQIGAYGRLDPARNVIS-VFPAP------ 186 (353)
T ss_pred --eeEEecCcc----cceEEeec-----ccccCCCcccceeeCCCccEEEeeccccceecCcccCcee-eeccC------
Confidence 122211110 11112221 133445566789999999999998753 344432211111 11111
Q ss_pred CcEEEEEecCCeEEEEeCCCcEEEE
Q 042844 172 EKIVKVSFGWGHALAQTEDGKLFGW 196 (372)
Q Consensus 172 ~~i~~I~~g~~~~~~lt~~g~vy~w 196 (372)
.-+.-.-++.|.+|.||.-
T Consensus 187 ------qG~gpyGi~atpdGsvwya 205 (353)
T COG4257 187 ------QGGGPYGICATPDGSVWYA 205 (353)
T ss_pred ------CCCCCcceEECCCCcEEEE
Confidence 1234467789999999976
No 33
>PHA02713 hypothetical protein; Provisional
Probab=70.78 E-value=99 Score=31.11 Aligned_cols=17 Identities=12% Similarity=0.175 Sum_probs=11.9
Q ss_pred ceEEEecCCcEEEEeCC
Q 042844 75 HSLAVTNNGAVWAWGRN 91 (372)
Q Consensus 75 h~~~lt~~G~v~~~G~n 91 (372)
+..+..-+|+||.+|-.
T Consensus 344 ~~~~~~~~g~IYviGG~ 360 (557)
T PHA02713 344 RFSLAVIDDTIYAIGGQ 360 (557)
T ss_pred ceeEEEECCEEEEECCc
Confidence 33444568899999964
No 34
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=69.32 E-value=49 Score=29.84 Aligned_cols=59 Identities=19% Similarity=0.262 Sum_probs=35.6
Q ss_pred cCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccccceEecccCCCcEEEEEe---cCCeEEEEeCCCcEEEEeCC
Q 042844 127 SGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSF---GWGHALAQTEDGKLFGWGYS 199 (372)
Q Consensus 127 g~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~p~~i~~~~~~~i~~I~~---g~~~~~~lt~~g~vy~wG~n 199 (372)
+.-|.++...||.||.-+. ..+.+|+-+...- +++.+.. ..-|.+++..||..|.+-..
T Consensus 62 ~ap~dvapapdG~VWft~q-g~gaiGhLdP~tG-------------ev~~ypLg~Ga~Phgiv~gpdg~~Witd~~ 123 (353)
T COG4257 62 SAPFDVAPAPDGAVWFTAQ-GTGAIGHLDPATG-------------EVETYPLGSGASPHGIVVGPDGSAWITDTG 123 (353)
T ss_pred CCccccccCCCCceEEecC-ccccceecCCCCC-------------ceEEEecCCCCCCceEEECCCCCeeEecCc
Confidence 3456778899999996443 3355555322111 1222222 23588889999999987653
No 35
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=69.00 E-value=1.5e+02 Score=30.87 Aligned_cols=126 Identities=14% Similarity=0.162 Sum_probs=62.0
Q ss_pred eEEEEeeCCCcEEEEeCCCCCccCCCCCCCCCCC--C--ccceeecC--CCCCCeEEEecCCCce-EEEecCCcEEE---
Q 042844 18 RIFMRSASGTAVVSFGDGSQGALGLPTSLTGVGG--D--AYEPTRVP--GLPSDVTSVSAGHYHS-LAVTNNGAVWA--- 87 (372)
Q Consensus 18 ~~~~~l~~~g~vy~wG~n~~gqLG~~~~~~~~~~--~--~~~p~~i~--~~~~~i~~I~~G~~h~-~~lt~~G~v~~--- 87 (372)
+..++.. ++.+|+|=.+....+-..-....... . ....+.++ .+...|.+|....... ++|-..-.|+.
T Consensus 34 rNLl~~~-d~~L~vWd~~e~~l~~~nlr~~~~~~~~~~~~~~q~L~~~~~~~f~v~~i~~n~~g~~lal~G~~~v~V~~L 112 (717)
T PF10168_consen 34 RNLLACR-DGDLFVWDSSECCLLTVNLRSLESDAEGPAKSSYQKLLPSNPPLFEVHQISLNPTGSLLALVGPRGVVVLEL 112 (717)
T ss_pred eeeEEEe-CCEEEEEECCCCEEEEEeeccccccccCccccCcceeecCCCCceeEEEEEECCCCCEEEEEcCCcEEEEEe
Confidence 5556654 69999999887655433211110000 0 11111111 1113688887766444 55555544443
Q ss_pred ---EeCCCCCCCcCCCCCCCCccCCCceeecCCceeEEEEeec-----CcEEEEEeCCCcEEEEe
Q 042844 88 ---WGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFAS-----GVVSSAIGDDGSLWVWG 144 (372)
Q Consensus 88 ---~G~n~~gqlg~~~~~~~~~~~~p~~i~~~~~~~i~~i~~g-----~~~~~~lt~~g~v~~~G 144 (372)
||.+..-+-|......+...-....+..-....|+++.-. ..|.++||+|+.+..+-
T Consensus 113 P~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~ 177 (717)
T PF10168_consen 113 PRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYD 177 (717)
T ss_pred ccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeEEEEecCCEEEEEe
Confidence 6655433333322221111111112222234567777544 57999999999776654
No 36
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=68.08 E-value=1.4e+02 Score=30.26 Aligned_cols=66 Identities=17% Similarity=0.117 Sum_probs=32.7
Q ss_pred ceEEEecCCcEEEEeCCCCCCCcCCCCCCCCccCCCceeecCCceeEEEEeecCcEEEEEeCCCcEEEEeCCC
Q 042844 75 HSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSK 147 (372)
Q Consensus 75 h~~~lt~~G~v~~~G~n~~gqlg~~~~~~~~~~~~p~~i~~~~~~~i~~i~~g~~~~~~lt~~g~v~~~G~n~ 147 (372)
+..+..-+|.||..|--+.+........ .+.|..-. -..+-.+...+....+..-+|.||+-|.-.
T Consensus 325 ~~~~~~~~~~lYv~GG~~~~~~~l~~ve----~YD~~~~~---W~~~a~M~~~R~~~~v~~l~g~iYavGG~d 390 (571)
T KOG4441|consen 325 RVGVAVLNGKLYVVGGYDSGSDRLSSVE----RYDPRTNQ---WTPVAPMNTKRSDFGVAVLDGKLYAVGGFD 390 (571)
T ss_pred cccEEEECCEEEEEccccCCCcccceEE----EecCCCCc---eeccCCccCccccceeEEECCEEEEEeccc
Confidence 4444556679999995443211111111 11111111 112333444455555667788999998543
No 37
>PHA02713 hypothetical protein; Provisional
Probab=66.57 E-value=64 Score=32.47 Aligned_cols=20 Identities=15% Similarity=0.092 Sum_probs=13.3
Q ss_pred cCcEEEEEeCCCcEEEEeCC
Q 042844 127 SGVVSSAIGDDGSLWVWGKS 146 (372)
Q Consensus 127 g~~~~~~lt~~g~v~~~G~n 146 (372)
...+..+..-+|+||++|..
T Consensus 341 ~R~~~~~~~~~g~IYviGG~ 360 (557)
T PHA02713 341 NRCRFSLAVIDDTIYAIGGQ 360 (557)
T ss_pred hhhceeEEEECCEEEEECCc
Confidence 33344455667899999964
No 38
>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length. The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.
Probab=64.17 E-value=22 Score=19.57 Aligned_cols=25 Identities=28% Similarity=0.242 Sum_probs=20.8
Q ss_pred CCcEEEEEecCCeEEEEeCCCcEEE
Q 042844 171 GEKIVKVSFGWGHALAQTEDGKLFG 195 (372)
Q Consensus 171 ~~~i~~I~~g~~~~~~lt~~g~vy~ 195 (372)
+++|..|++|..+.++.|+.+-|-.
T Consensus 1 gE~i~aia~g~~~vavaTS~~~lRi 25 (27)
T PF12341_consen 1 GEEIEAIAAGDSWVAVATSAGYLRI 25 (27)
T ss_pred CceEEEEEccCCEEEEEeCCCeEEe
Confidence 3679999999999999999876543
No 39
>COG5308 NUP170 Nuclear pore complex subunit [Intracellular trafficking and secretion]
Probab=64.07 E-value=74 Score=33.48 Aligned_cols=107 Identities=10% Similarity=0.132 Sum_probs=54.2
Q ss_pred EEEeeCCCcEEEEeCCCCCccCCCCCCCCCCCCccceeecCCCCCCeEEEecCCCceEEEecCCcEEEEeCCCCCCCcCC
Q 042844 20 FMRSASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRG 99 (372)
Q Consensus 20 ~~~l~~~g~vy~wG~n~~gqLG~~~~~~~~~~~~~~p~~i~~~~~~i~~I~~G~~h~~~lt~~G~v~~~G~n~~gqlg~~ 99 (372)
.+-+|.|+++..|-.|.....-.-+ ....+-+.+....++.--...--.|-+++.+.-++|..|.......|
T Consensus 95 rcWiT~dnkLiLWnynn~neyq~id------d~shtIlkVkLvrPkantFvs~i~hlL~vAT~~e~~ilgvs~d~~T~-- 166 (1263)
T COG5308 95 RCWITNDNKLILWNYNNSNEYQEID------DFSHTILKVKLVRPKANTFVSRISHLLFVATEKEVMILGVSKDTKTG-- 166 (1263)
T ss_pred ceEEEcCCEEEEEecCCCcchhhhh------hhhhheeEEEEeccCCcccHHhhhhhhhhhhhheeeEEEEEeccccc--
Confidence 3557899999999987543322111 11222222222222222222333688888888999999853321110
Q ss_pred CCCCCCccCCCceeecCCceeEEEEeecCcEEEEEeC-CCcEEEEeCCC
Q 042844 100 ALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGD-DGSLWVWGKSK 147 (372)
Q Consensus 100 ~~~~~~~~~~p~~i~~~~~~~i~~i~~g~~~~~~lt~-~g~v~~~G~n~ 147 (372)
.+..+.. .++--..|.+-.+++++ +|+||.-|.+.
T Consensus 167 ------------Els~fnT-gl~vsvqGinV~civs~e~GrIFf~g~~d 202 (1263)
T COG5308 167 ------------ELSLFNT-GLVVSVQGINVRCIVSEEDGRIFFGGEND 202 (1263)
T ss_pred ------------eeEEEec-ceEEeccCceeEEEEeccCCcEEEecCCC
Confidence 0111111 12212234444445554 59999888765
No 40
>PF06739 SBBP: Beta-propeller repeat; InterPro: IPR010620 This family is related to IPR001680 from INTERPRO and is likely to also form a beta-propeller. SBBP stands for Seven Bladed Beta Propeller.
Probab=63.68 E-value=8.7 Score=23.01 Aligned_cols=18 Identities=22% Similarity=0.591 Sum_probs=15.6
Q ss_pred eEEEEeCCCcEEEEeCCC
Q 042844 183 HALAQTEDGKLFGWGYSA 200 (372)
Q Consensus 183 ~~~~lt~~g~vy~wG~n~ 200 (372)
+.++++.+|.||+.|...
T Consensus 16 ~~IavD~~GNiYv~G~T~ 33 (38)
T PF06739_consen 16 NGIAVDSNGNIYVTGYTN 33 (38)
T ss_pred EEEEECCCCCEEEEEeec
Confidence 678999999999999753
No 41
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=63.29 E-value=99 Score=29.00 Aligned_cols=17 Identities=18% Similarity=0.104 Sum_probs=13.2
Q ss_pred CeEEEEeCCCcEEEEeC
Q 042844 182 GHALAQTEDGKLFGWGY 198 (372)
Q Consensus 182 ~~~~~lt~~g~vy~wG~ 198 (372)
.+.++.+.+|.||++-.
T Consensus 321 ~~l~~~~~~G~l~~~d~ 337 (377)
T TIGR03300 321 GYLVVGDFEGYLHWLSR 337 (377)
T ss_pred CEEEEEeCCCEEEEEEC
Confidence 46777788899998864
No 42
>PHA03098 kelch-like protein; Provisional
Probab=59.73 E-value=1.9e+02 Score=28.74 Aligned_cols=15 Identities=7% Similarity=-0.048 Sum_probs=10.9
Q ss_pred EEeeCCCcEEEEeCC
Q 042844 21 MRSASGTAVVSFGDG 35 (372)
Q Consensus 21 ~~l~~~g~vy~wG~n 35 (372)
.+..-+++||+.|-.
T Consensus 289 ~~~~~~~~lyv~GG~ 303 (534)
T PHA03098 289 GSVVLNNVIYFIGGM 303 (534)
T ss_pred eEEEECCEEEEECCC
Confidence 444577899999953
No 43
>PHA03098 kelch-like protein; Provisional
Probab=58.89 E-value=97 Score=30.82 Aligned_cols=14 Identities=7% Similarity=0.036 Sum_probs=10.4
Q ss_pred eeCCCcEEEEeCCC
Q 042844 23 SASGTAVVSFGDGS 36 (372)
Q Consensus 23 l~~~g~vy~wG~n~ 36 (372)
..-+++||++|-..
T Consensus 339 ~~~~~~lyv~GG~~ 352 (534)
T PHA03098 339 TVFNNRIYVIGGIY 352 (534)
T ss_pred EEECCEEEEEeCCC
Confidence 34588999999643
No 44
>TIGR01063 gyrA DNA gyrase, A subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV.
Probab=56.00 E-value=2.8e+02 Score=29.47 Aligned_cols=73 Identities=10% Similarity=-0.031 Sum_probs=40.4
Q ss_pred EEEEeecCcEEEEEeCCCcEEEEeCCCCCCC---CCCCCCcccccceEecccCCCcEEEEEec-----CCeEEEEeCCCc
Q 042844 121 VCAAFASGVVSSAIGDDGSLWVWGKSKRGQL---GLGKDITEAIVPSRVEALAGEKIVKVSFG-----WGHALAQTEDGK 192 (372)
Q Consensus 121 i~~i~~g~~~~~~lt~~g~v~~~G~n~~gql---g~~~~~~~~~~p~~i~~~~~~~i~~I~~g-----~~~~~~lt~~g~ 192 (372)
....+....+.++.|+.|++|..-...--.. +.|.. ....+....+++|+.+.+- ....+++|.+|.
T Consensus 539 ~~~~~~t~d~LllfTs~Grv~~l~~~~IP~~~r~~~G~~-----i~~ll~L~~~E~Iv~~i~~~~~~~~~~lvliT~~Gy 613 (800)
T TIGR01063 539 QLLVASTHDYLLFFTNRGKVYWLKVYQIPEASRTAKGKP-----IVNLLPLQPDERITAILSVKEFDDGLYLFFATKNGV 613 (800)
T ss_pred EEEEecCCCeEEEEeCCCcEEEEEhhhCcCCCcCCCCcC-----HHHhccCCCCCeEEEEEEeccCCCCCEEEEEeCCCE
Confidence 3334455666889999999998843221111 11111 1112333445677776652 235778888887
Q ss_pred EEEEeC
Q 042844 193 LFGWGY 198 (372)
Q Consensus 193 vy~wG~ 198 (372)
+--.-.
T Consensus 614 iKRi~l 619 (800)
T TIGR01063 614 VKKTSL 619 (800)
T ss_pred EEEEEh
Confidence 765543
No 45
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=54.13 E-value=2.3e+02 Score=29.23 Aligned_cols=68 Identities=22% Similarity=0.266 Sum_probs=39.0
Q ss_pred EEEEeCCCcEEEEeCCCCCCCCCCCCCcccccceEec-------ccCCCcEEEEEecCC----eEEEEeCCCcEEEEeC
Q 042844 131 SSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVE-------ALAGEKIVKVSFGWG----HALAQTEDGKLFGWGY 198 (372)
Q Consensus 131 ~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~p~~i~-------~~~~~~i~~I~~g~~----~~~~lt~~g~vy~wG~ 198 (372)
.+++++||.-|+--.|.+=.++.-........|.+++ .+....+..++||.. .+++||..|.+.-|-.
T Consensus 170 av~fsEdgSYfvT~gnrHvk~wyl~~~~KykdpiPl~gRs~~lg~lr~n~f~avaCg~gicAestfait~qGhLvEFSs 248 (1080)
T KOG1408|consen 170 AVAFSEDGSYFVTSGNRHVKLWYLQIQSKYKDPIPLPGRSYFLGNLRFNEFLAVACGVGICAESTFAITAQGHLVEFSS 248 (1080)
T ss_pred EEEEccCCceeeeeeeeeEEEEEeeccccccCCccccchhhhccccccchhhhhhhcCcccccceEEEecccceeeech
Confidence 4566777766655444432222111111112222222 233456889999988 8999999999887764
No 46
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=51.61 E-value=2.3e+02 Score=27.35 Aligned_cols=100 Identities=17% Similarity=0.259 Sum_probs=51.6
Q ss_pred CCCCeEEEecCCCceEEE--ecCCcEEEEeCCCCCCCcCCCCCCCCccCCCceeecCCceeEEEEeecCcEEEEE--eCC
Q 042844 62 LPSDVTSVSAGHYHSLAV--TNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAI--GDD 137 (372)
Q Consensus 62 ~~~~i~~I~~G~~h~~~l--t~~G~v~~~G~n~~gqlg~~~~~~~~~~~~p~~i~~~~~~~i~~i~~g~~~~~~l--t~~ 137 (372)
+|+++..++....-.+.+ +..|++|.|=.+..--|..-..+ - ..|.++.-..+..+++ .+|
T Consensus 80 ~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aH-------------Y--Q~ITcL~fs~dgs~iiTgskD 144 (476)
T KOG0646|consen 80 LPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAH-------------Y--QSITCLKFSDDGSHIITGSKD 144 (476)
T ss_pred cccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhh-------------c--cceeEEEEeCCCcEEEecCCC
Confidence 455677777766544444 46899999975432222221111 1 1344444444444444 578
Q ss_pred CcEEEEeCCCCCCCCCCCCCcccccceEecccC--CCcEEEEEecCC
Q 042844 138 GSLWVWGKSKRGQLGLGKDITEAIVPSRVEALA--GEKIVKVSFGWG 182 (372)
Q Consensus 138 g~v~~~G~n~~gqlg~~~~~~~~~~p~~i~~~~--~~~i~~I~~g~~ 182 (372)
|.|.+|--..- .+..+...|.++..+. .-.|+++.+|..
T Consensus 145 g~V~vW~l~~l------v~a~~~~~~~p~~~f~~HtlsITDl~ig~G 185 (476)
T KOG0646|consen 145 GAVLVWLLTDL------VSADNDHSVKPLHIFSDHTLSITDLQIGSG 185 (476)
T ss_pred ccEEEEEEEee------cccccCCCccceeeeccCcceeEEEEecCC
Confidence 99999964321 1111222333333332 235777777665
No 47
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=50.81 E-value=2e+02 Score=26.34 Aligned_cols=16 Identities=19% Similarity=0.426 Sum_probs=11.3
Q ss_pred EEEEeCCCcEEEEeCC
Q 042844 131 SSAIGDDGSLWVWGKS 146 (372)
Q Consensus 131 ~~~lt~~g~v~~~G~n 146 (372)
.++..-+++||++|-.
T Consensus 165 ~~~~~~~~~iYv~GG~ 180 (323)
T TIGR03548 165 PVCVKLQNELYVFGGG 180 (323)
T ss_pred ceEEEECCEEEEEcCC
Confidence 3445567899999963
No 48
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=48.59 E-value=3.3e+02 Score=28.27 Aligned_cols=70 Identities=17% Similarity=0.070 Sum_probs=39.9
Q ss_pred eEEEEeecCcE-EEEEeCCCcEEEEeCCCCCCCCCCCCCcccccceEecccCCCcEEEEEecCCeEEEEeCCCcEEEEeC
Q 042844 120 NVCAAFASGVV-SSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGY 198 (372)
Q Consensus 120 ~i~~i~~g~~~-~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~p~~i~~~~~~~i~~I~~g~~~~~~lt~~g~vy~wG~ 198 (372)
+++.+.-...+ -++++++|.+++.|. +|........-.+ ....+|.....-.+-.++++.+|+++.--.
T Consensus 85 ~lI~mgWs~~eeLI~v~k~g~v~Vy~~-----~ge~ie~~svg~e-----~~~~~I~ec~~f~~GVavlt~~g~v~~i~~ 154 (829)
T KOG2280|consen 85 ELIGMGWSDDEELICVQKDGTVHVYGL-----LGEFIESNSVGFE-----SQMSDIVECRFFHNGVAVLTVSGQVILING 154 (829)
T ss_pred CeeeecccCCceEEEEeccceEEEeec-----chhhhcccccccc-----cccCceeEEEEecCceEEEecCCcEEEEcC
Confidence 34444444444 567899999999875 2211111111111 112345555555577889999999998654
Q ss_pred C
Q 042844 199 S 199 (372)
Q Consensus 199 n 199 (372)
+
T Consensus 155 ~ 155 (829)
T KOG2280|consen 155 V 155 (829)
T ss_pred C
Confidence 4
No 49
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=47.10 E-value=2.5e+02 Score=26.30 Aligned_cols=18 Identities=17% Similarity=-0.029 Sum_probs=13.4
Q ss_pred CeeEEEecCCCEEEEeCC
Q 042844 274 DHSLVLGRNGVLLSCGSN 291 (372)
Q Consensus 274 ~h~~alt~~G~vy~wG~n 291 (372)
.+.++.+.+|.||++-..
T Consensus 321 ~~l~~~~~~G~l~~~d~~ 338 (377)
T TIGR03300 321 GYLVVGDFEGYLHWLSRE 338 (377)
T ss_pred CEEEEEeCCCEEEEEECC
Confidence 466777888999988643
No 50
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=46.78 E-value=54 Score=30.17 Aligned_cols=58 Identities=16% Similarity=0.381 Sum_probs=39.8
Q ss_pred EEEeCCCcEEEEeCCCCCCCCCCCCCcccccceEecccCCCcEEEEEecCCe--EEEEeCCCcEEEEeC
Q 042844 132 SAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGH--ALAQTEDGKLFGWGY 198 (372)
Q Consensus 132 ~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~p~~i~~~~~~~i~~I~~g~~~--~~~lt~~g~vy~wG~ 198 (372)
++....|+||+|-... ..+...+++.....+..|++.+...+- .+++..++.||-|-.
T Consensus 323 a~gnq~g~v~vwdL~~---------~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdr 382 (385)
T KOG1034|consen 323 ALGNQSGKVYVWDLDN---------NEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDR 382 (385)
T ss_pred hhccCCCcEEEEECCC---------CCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEe
Confidence 4456779999996421 122255666666777889998888765 455578888888854
No 51
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=46.25 E-value=84 Score=29.76 Aligned_cols=27 Identities=37% Similarity=0.492 Sum_probs=20.3
Q ss_pred cEEEEEecCCe---EEEEeCCCcEEEEeCC
Q 042844 173 KIVKVSFGWGH---ALAQTEDGKLFGWGYS 199 (372)
Q Consensus 173 ~i~~I~~g~~~---~~~lt~~g~vy~wG~n 199 (372)
.+..+.++.++ .+++..+|++..|..+
T Consensus 161 ~~~~~~~~~~~~~~vl~i~~~g~l~~w~~~ 190 (373)
T PLN03215 161 ALVKVKEGDNHRDGVLGIGRDGKINYWDGN 190 (373)
T ss_pred EEEEeecCCCcceEEEEEeecCcEeeecCC
Confidence 34556777776 8888899999999754
No 52
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=46.22 E-value=1.2e+02 Score=26.87 Aligned_cols=120 Identities=13% Similarity=0.176 Sum_probs=60.2
Q ss_pred eeeeeeEEEEeeCCCcEEEEeCCCCCccCCCCCCCCCCCCccceeecCC---CCCCeEEEecCCCc-eEEEecCCcEEEE
Q 042844 13 NVLTSRIFMRSASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPG---LPSDVTSVSAGHYH-SLAVTNNGAVWAW 88 (372)
Q Consensus 13 ~~~~~~~~~~l~~~g~vy~wG~n~~gqLG~~~~~~~~~~~~~~p~~i~~---~~~~i~~I~~G~~h-~~~lt~~G~v~~~ 88 (372)
.+|++. ++..||++..-|-+..|.-+. ..+.|-.... ..+...+++.++++ ++.+..||+|+..
T Consensus 67 ~FCSgg---~~L~dG~ll~tGG~~~G~~~i---------r~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~DG~vlIv 134 (243)
T PF07250_consen 67 TFCSGG---AFLPDGRLLQTGGDNDGNKAI---------RIFTPCTSDGTCDWTESPNDMQSGRWYPTATTLPDGRVLIV 134 (243)
T ss_pred CcccCc---CCCCCCCEEEeCCCCccccce---------EEEecCCCCCCCCceECcccccCCCccccceECCCCCEEEE
Confidence 445544 234789999888765433221 2334333110 11123346777755 5667799999999
Q ss_pred eCCCCCCCcCCCCCCCCccCCCceeecCCceeEEEEeecCcEEEEEeCCCcEEEEeCCC
Q 042844 89 GRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSK 147 (372)
Q Consensus 89 G~n~~gqlg~~~~~~~~~~~~p~~i~~~~~~~i~~i~~g~~~~~~lt~~g~v~~~G~n~ 147 (372)
|-....- .+..........+..++.+....- ......+=.+.|..+|+||.|+...
T Consensus 135 GG~~~~t--~E~~P~~~~~~~~~~~~~l~~~~~-~~~~nlYP~~~llPdG~lFi~an~~ 190 (243)
T PF07250_consen 135 GGSNNPT--YEFWPPKGPGPGPVTLPFLSQTSD-TLPNNLYPFVHLLPDGNLFIFANRG 190 (243)
T ss_pred eCcCCCc--ccccCCccCCCCceeeecchhhhc-cCccccCceEEEcCCCCEEEEEcCC
Confidence 8543110 000000000111222222221111 1223445578999999999998753
No 53
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=44.53 E-value=37 Score=18.53 Aligned_cols=18 Identities=28% Similarity=0.578 Sum_probs=14.5
Q ss_pred ceEEEecCCcEEEEeCCC
Q 042844 75 HSLAVTNNGAVWAWGRNN 92 (372)
Q Consensus 75 h~~~lt~~G~v~~~G~n~ 92 (372)
|.++++.+|+||..-.++
T Consensus 5 ~gvav~~~g~i~VaD~~n 22 (28)
T PF01436_consen 5 HGVAVDSDGNIYVADSGN 22 (28)
T ss_dssp EEEEEETTSEEEEEECCC
T ss_pred cEEEEeCCCCEEEEECCC
Confidence 568889999999987554
No 54
>PLN02153 epithiospecifier protein
Probab=44.40 E-value=2.6e+02 Score=25.83 Aligned_cols=16 Identities=13% Similarity=-0.006 Sum_probs=11.9
Q ss_pred eEEEEeCCCcEEEEeC
Q 042844 183 HALAQTEDGKLFGWGY 198 (372)
Q Consensus 183 ~~~~lt~~g~vy~wG~ 198 (372)
+++.+..+++||.||-
T Consensus 307 ~~~~v~~~~~~~~~gG 322 (341)
T PLN02153 307 TTATVYGKNGLLMHGG 322 (341)
T ss_pred cccccCCcceEEEEcC
Confidence 4556677778999984
No 55
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=43.51 E-value=1e+02 Score=29.17 Aligned_cols=61 Identities=15% Similarity=0.226 Sum_probs=43.4
Q ss_pred eEEEecCCCc---eEEEecCCcEEEEeCCCCCCCcCCCCCCCCccCCCceeecCCceeEEEEeecCcEEEEEeCCCcEEE
Q 042844 66 VTSVSAGHYH---SLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWV 142 (372)
Q Consensus 66 i~~I~~G~~h---~~~lt~~G~v~~~G~n~~gqlg~~~~~~~~~~~~p~~i~~~~~~~i~~i~~g~~~~~~lt~~g~v~~ 142 (372)
+..+.+++.+ .+++..+|++..|..+.. .. ++ .....+.+|.-.....+|++..|.||.
T Consensus 162 ~~~~~~~~~~~~~vl~i~~~g~l~~w~~~~W--------------t~---l~-~~~~~~~DIi~~kGkfYAvD~~G~l~~ 223 (373)
T PLN03215 162 LVKVKEGDNHRDGVLGIGRDGKINYWDGNVL--------------KA---LK-QMGYHFSDIIVHKGQTYALDSIGIVYW 223 (373)
T ss_pred EEEeecCCCcceEEEEEeecCcEeeecCCee--------------eE---cc-CCCceeeEEEEECCEEEEEcCCCeEEE
Confidence 3345777776 677888999988964321 11 21 234568888888888999999999999
Q ss_pred Ee
Q 042844 143 WG 144 (372)
Q Consensus 143 ~G 144 (372)
+.
T Consensus 224 i~ 225 (373)
T PLN03215 224 IN 225 (373)
T ss_pred Ee
Confidence 86
No 56
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=42.33 E-value=4.5e+02 Score=27.93 Aligned_cols=69 Identities=16% Similarity=0.282 Sum_probs=38.0
Q ss_pred cCcEEEEEeCCCc-EEEEeCCCCCCCCCCCCCcccccceEecccCCCcEEEEEecCCeEEEEeCCCcE--EEEeC
Q 042844 127 SGVVSSAIGDDGS-LWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKL--FGWGY 198 (372)
Q Consensus 127 g~~~~~~lt~~g~-v~~~G~n~~gqlg~~~~~~~~~~p~~i~~~~~~~i~~I~~g~~~~~~lt~~g~v--y~wG~ 198 (372)
+....++++.+|+ |+++|++.. .-.-........|.-+.. .++.|..|+|-..|.+.=+.++.| |.++.
T Consensus 14 ~G~t~i~~d~~gefi~tcgsdg~--ir~~~~~sd~e~P~ti~~-~g~~v~~ia~~s~~f~~~s~~~tv~~y~fps 85 (933)
T KOG1274|consen 14 GGLTLICYDPDGEFICTCGSDGD--IRKWKTNSDEEEPETIDI-SGELVSSIACYSNHFLTGSEQNTVLRYKFPS 85 (933)
T ss_pred CceEEEEEcCCCCEEEEecCCCc--eEEeecCCcccCCchhhc-cCceeEEEeecccceEEeeccceEEEeeCCC
Confidence 3445566666665 445554321 111111111234444432 456799999998888888888874 44444
No 57
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=41.59 E-value=2.2e+02 Score=24.11 Aligned_cols=27 Identities=19% Similarity=0.284 Sum_probs=16.6
Q ss_pred CeEEEecCCC-ceEEEec-CCcEEEEeCC
Q 042844 65 DVTSVSAGHY-HSLAVTN-NGAVWAWGRN 91 (372)
Q Consensus 65 ~i~~I~~G~~-h~~~lt~-~G~v~~~G~n 91 (372)
.|..+..... ..++... +|.|+.|-..
T Consensus 95 ~i~~~~~~~~~~~~~~~~~~~~i~~~~~~ 123 (289)
T cd00200 95 YVSSVAFSPDGRILSSSSRDKTIKVWDVE 123 (289)
T ss_pred cEEEEEEcCCCCEEEEecCCCeEEEEECC
Confidence 5666665554 3344444 8899998754
No 58
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=41.43 E-value=2.5e+02 Score=27.01 Aligned_cols=18 Identities=22% Similarity=0.362 Sum_probs=15.5
Q ss_pred CeEEEEeCCCcEEEEeCC
Q 042844 182 GHALAQTEDGKLFGWGYS 199 (372)
Q Consensus 182 ~~~~~lt~~g~vy~wG~n 199 (372)
-|.++++.+|.+|+||-.
T Consensus 234 Gcq~~vtpqg~i~vyGGY 251 (521)
T KOG1230|consen 234 GCQFSVTPQGGIVVYGGY 251 (521)
T ss_pred cceEEecCCCcEEEEcch
Confidence 578899999999999953
No 59
>PHA02790 Kelch-like protein; Provisional
Probab=40.63 E-value=1.7e+02 Score=28.69 Aligned_cols=14 Identities=7% Similarity=0.050 Sum_probs=10.6
Q ss_pred EeeCCCcEEEEeCC
Q 042844 22 RSASGTAVVSFGDG 35 (372)
Q Consensus 22 ~l~~~g~vy~wG~n 35 (372)
+..-+|+||+-|-.
T Consensus 314 ~v~~~~~iYviGG~ 327 (480)
T PHA02790 314 GVPANNKLYVVGGL 327 (480)
T ss_pred EEEECCEEEEECCc
Confidence 34578999999964
No 60
>PRK05560 DNA gyrase subunit A; Validated
Probab=40.14 E-value=4.8e+02 Score=27.71 Aligned_cols=116 Identities=11% Similarity=-0.000 Sum_probs=58.4
Q ss_pred CCCceEEEecCCcEEEEeCCCCCC---CcCCCCCCCCccCCCceeecCCceeEEEEeecCcEEEEEeCCCcEEEEeCCCC
Q 042844 72 GHYHSLAVTNNGAVWAWGRNNEVQ---LGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKR 148 (372)
Q Consensus 72 G~~h~~~lt~~G~v~~~G~n~~gq---lg~~~~~~~~~~~~p~~i~~~~~~~i~~i~~g~~~~~~lt~~g~v~~~G~n~~ 148 (372)
-..-.++|+++|.+-.--...+.. -+.+.. -..+..-........+......+++|+.|++|..-...-
T Consensus 497 ~E~v~vllS~~GyIKri~~~~~~~~~~~~~g~~--------~~klKe~D~l~~~~~~~t~d~LllfTs~Grv~~l~v~~i 568 (805)
T PRK05560 497 EEDVVVTLTHGGYIKRTPLDEYRAQRRGGKGVS--------GAKTKEDDFVEHLFVASTHDTLLFFTNRGRVYRLKVYEI 568 (805)
T ss_pred CCCEEEEEeCCCEEEEcchhhhhhhcccCCCcc--------ccccCCCCeeEEEEEecCCCeEEEEecCCeEEEEEhhhC
Confidence 355668889999877654332211 000000 001111122233344455666899999999998865422
Q ss_pred CCCCCCCCCcccccceEecccCCCcEEEEEecC-----CeEEEEeCCCcEEEEe
Q 042844 149 GQLGLGKDITEAIVPSRVEALAGEKIVKVSFGW-----GHALAQTEDGKLFGWG 197 (372)
Q Consensus 149 gqlg~~~~~~~~~~p~~i~~~~~~~i~~I~~g~-----~~~~~lt~~g~vy~wG 197 (372)
-..+.. + .-......+....+++|+.+.+-. ...+++|.+|.+--.-
T Consensus 569 P~~~~~-~-~G~~i~~ll~L~~~E~Iv~~i~~~~~~~e~~lvlvTk~GyiKRi~ 620 (805)
T PRK05560 569 PEASRT-A-RGRPIVNLLPLEPGEKITAILPVREFDDDKYLFFATKNGTVKKTS 620 (805)
T ss_pred cCCCcC-C-CCeEHHHhcCCCCCceEEEEEeccCCCCCCEEEEEeCCCEEEEEE
Confidence 111100 0 000111123334557787777644 3578888888766544
No 61
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=39.55 E-value=2.6e+02 Score=28.35 Aligned_cols=23 Identities=17% Similarity=0.134 Sum_probs=16.5
Q ss_pred EEEecCCeeEEEecCCCEEEEeC
Q 042844 268 DIACGFDHSLVLGRNGVLLSCGS 290 (372)
Q Consensus 268 ~I~~G~~h~~alt~~G~vy~wG~ 290 (372)
.......+.-+..-++++|+-|-
T Consensus 508 ~m~~~rs~~g~~~~~~~ly~vGG 530 (571)
T KOG4441|consen 508 PMTSPRSAVGVVVLGGKLYAVGG 530 (571)
T ss_pred cCccccccccEEEECCEEEEEec
Confidence 34455666667777899999985
No 62
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=39.21 E-value=3.9e+02 Score=26.38 Aligned_cols=26 Identities=15% Similarity=0.332 Sum_probs=17.2
Q ss_pred cEEEEEecCC-eEEEEeCCCcEEEEeC
Q 042844 173 KIVKVSFGWG-HALAQTEDGKLFGWGY 198 (372)
Q Consensus 173 ~i~~I~~g~~-~~~~lt~~g~vy~wG~ 198 (372)
-+..++.+.+ -.+-=+++|.++.|+.
T Consensus 248 ~Vl~v~F~engdviTgDS~G~i~Iw~~ 274 (626)
T KOG2106|consen 248 FVLCVTFLENGDVITGDSGGNILIWSK 274 (626)
T ss_pred EEEEEEEcCCCCEEeecCCceEEEEeC
Confidence 3555655544 3444577889999997
No 63
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=38.80 E-value=3.4e+02 Score=25.55 Aligned_cols=17 Identities=24% Similarity=0.317 Sum_probs=12.4
Q ss_pred ceEEEecCCcEEEEeCC
Q 042844 75 HSLAVTNNGAVWAWGRN 91 (372)
Q Consensus 75 h~~~lt~~G~v~~~G~n 91 (372)
|+++...+++||.+|-.
T Consensus 132 ~~~~~~~~~~IYv~GG~ 148 (376)
T PRK14131 132 HVAVSLHNGKAYITGGV 148 (376)
T ss_pred eEEEEeeCCEEEEECCC
Confidence 55554468999999964
No 64
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=38.44 E-value=4.8e+02 Score=27.14 Aligned_cols=30 Identities=20% Similarity=0.075 Sum_probs=24.9
Q ss_pred CCceeEEEEeecCc----EEEEEeCCCcEEEEeC
Q 042844 116 LDQVNVCAAFASGV----VSSAIGDDGSLWVWGK 145 (372)
Q Consensus 116 ~~~~~i~~i~~g~~----~~~~lt~~g~v~~~G~ 145 (372)
+.+..+..++||.. .+++||..|+|.-|-+
T Consensus 215 lr~n~f~avaCg~gicAestfait~qGhLvEFSs 248 (1080)
T KOG1408|consen 215 LRFNEFLAVACGVGICAESTFAITAQGHLVEFSS 248 (1080)
T ss_pred cccchhhhhhhcCcccccceEEEecccceeeech
Confidence 44556889999988 8999999999998754
No 65
>PRK05560 DNA gyrase subunit A; Validated
Probab=37.37 E-value=5.3e+02 Score=27.40 Aligned_cols=120 Identities=17% Similarity=0.092 Sum_probs=61.9
Q ss_pred cCCCceEEEecCCcEEEEeCCCCCCCcCCCCCCCCccCCCceeecCCceeEEEEeecC-----cEEEEEeCCCcEEEEeC
Q 042844 71 AGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASG-----VVSSAIGDDGSLWVWGK 145 (372)
Q Consensus 71 ~G~~h~~~lt~~G~v~~~G~n~~gqlg~~~~~~~~~~~~p~~i~~~~~~~i~~i~~g~-----~~~~~lt~~g~v~~~G~ 145 (372)
....+.+++|+.|++|..-...-...+... ... ..-..+....+.+|+.+.+-. ...+++|++|.+..--.
T Consensus 546 ~t~d~LllfTs~Grv~~l~v~~iP~~~~~~---~G~-~i~~ll~L~~~E~Iv~~i~~~~~~~e~~lvlvTk~GyiKRi~l 621 (805)
T PRK05560 546 STHDTLLFFTNRGRVYRLKVYEIPEASRTA---RGR-PIVNLLPLEPGEKITAILPVREFDDDKYLFFATKNGTVKKTSL 621 (805)
T ss_pred cCCCeEEEEecCCeEEEEEhhhCcCCCcCC---CCe-EHHHhcCCCCCceEEEEEeccCCCCCCEEEEEeCCCEEEEEEh
Confidence 334456888999999998755322221100 000 000112223445666665544 34788899998776543
Q ss_pred CCCCCCCCCCCCcccccceEecccCCCcEEEEEe--cCCeEEEEeCCCcEEEEeCCCC
Q 042844 146 SKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSF--GWGHALAQTEDGKLFGWGYSAD 201 (372)
Q Consensus 146 n~~gqlg~~~~~~~~~~p~~i~~~~~~~i~~I~~--g~~~~~~lt~~g~vy~wG~n~~ 201 (372)
..+-....+ -..-+..-.++.++.+.. ..++.+++|++|++|.+-...-
T Consensus 622 ~~~~~~~r~-------G~~~ikLke~D~lv~v~~~~~~d~lll~T~~Gr~~r~~~~eI 672 (805)
T PRK05560 622 SEFSNIRSN-------GIIAINLDEGDELIGVRLTDGDDDILLATKNGKAIRFPESDV 672 (805)
T ss_pred HHhhhcccC-------CceeeccCCCCEEEEEEEeCCCCEEEEEECCCcEEEEEhhhc
Confidence 322110000 001111112344554433 3456999999999999876543
No 66
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=37.10 E-value=35 Score=21.16 Aligned_cols=18 Identities=22% Similarity=0.584 Sum_probs=11.6
Q ss_pred CCeEEEEeCCCcEEEEeC
Q 042844 181 WGHALAQTEDGKLFGWGY 198 (372)
Q Consensus 181 ~~~~~~lt~~g~vy~wG~ 198 (372)
..|+++...+++||++|=
T Consensus 3 ~~h~~~~~~~~~i~v~GG 20 (49)
T PF13418_consen 3 YGHSAVSIGDNSIYVFGG 20 (49)
T ss_dssp BS-EEEEE-TTEEEEE--
T ss_pred ceEEEEEEeCCeEEEECC
Confidence 368888887789999983
No 67
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=36.23 E-value=5.2e+02 Score=26.95 Aligned_cols=65 Identities=17% Similarity=0.257 Sum_probs=40.2
Q ss_pred eeeeeeEEEEeeCCCcEEEEeCCCCCccCCCCCCCCCCCCccceeecCCCCCCeEEEecCC--CceEEEecCCcEEEEeC
Q 042844 13 NVLTSRIFMRSASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGH--YHSLAVTNNGAVWAWGR 90 (372)
Q Consensus 13 ~~~~~~~~~~l~~~g~vy~wG~n~~gqLG~~~~~~~~~~~~~~p~~i~~~~~~i~~I~~G~--~h~~~lt~~G~v~~~G~ 90 (372)
+...+++++.-..|-.+..||.+.. ....|..+..-...|+.-..|. .+.+-+.+||.++.|..
T Consensus 153 Ws~DSr~l~~gsrD~s~rl~~v~~~--------------k~~~~~~l~gHkd~VvacfF~~~~~~l~tvskdG~l~~W~~ 218 (893)
T KOG0291|consen 153 WSDDSRLLVTGSRDLSARLFGVDGN--------------KNLFTYALNGHKDYVVACFFGANSLDLYTVSKDGALFVWTC 218 (893)
T ss_pred eccCCceEEeccccceEEEEEeccc--------------cccceEeccCCCcceEEEEeccCcceEEEEecCceEEEEEe
Confidence 3445555555566777777776532 1134444444444566555554 45577889999999997
Q ss_pred C
Q 042844 91 N 91 (372)
Q Consensus 91 n 91 (372)
+
T Consensus 219 ~ 219 (893)
T KOG0291|consen 219 D 219 (893)
T ss_pred c
Confidence 7
No 68
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=35.96 E-value=5.8e+02 Score=27.38 Aligned_cols=40 Identities=10% Similarity=0.148 Sum_probs=32.2
Q ss_pred cEEEEEecCCeEEEEeCCCcEEEEeCCCCCCCCCCCCCCc
Q 042844 173 KIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALE 212 (372)
Q Consensus 173 ~i~~I~~g~~~~~~lt~~g~vy~wG~n~~gqlg~~~~~~~ 212 (372)
.--+|++..+..++.+.+|.|-.|-.+...|.......++
T Consensus 316 ~~fDiSsn~~alafgd~~g~v~~wa~~~~P~Fn~~s~~t~ 355 (1118)
T KOG1275|consen 316 SAFDISSNGDALAFGDHEGHVNLWADRPQPQFNEYSRETE 355 (1118)
T ss_pred eeEEecCCCceEEEecccCcEeeecCCCCCccCCCccccc
Confidence 3458899999999999999999999988888866554433
No 69
>PF03785 Peptidase_C25_C: Peptidase family C25, C terminal ig-like domain; InterPro: IPR005536 This domain is found in almost all members of MEROPS peptidase family C25, (clan CD). Peptidase family C25 is a protein family found in the bacteria Porphyromonas gingivalis (Bacteroides gingivalis) a Gram-negative anaerobic bacterial species strongly associated with adult periodontitis. One of its distinguishing characteristics and putative virulence properties is the ability to agglutinate erythrocytes []. It is a highly proteolytic organism which metabolises small peptides and amino acids. Indirect evidence suggests that the proteases produced by this microorganism constitute an important virulence factor []. Protease-encoding genes have been shown to contain multiple copies of repeated nucleotide sequences. These conserved sequences have also been found in haemagglutinin genes [].; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 1CVR_A.
Probab=35.53 E-value=55 Score=23.35 Aligned_cols=40 Identities=20% Similarity=0.249 Sum_probs=27.2
Q ss_pred ceeecCCCCCCeEEEecC-CCceEEEecCCcEEEEeCCCCCC
Q 042844 55 EPTRVPGLPSDVTSVSAG-HYHSLAVTNNGAVWAWGRNNEVQ 95 (372)
Q Consensus 55 ~p~~i~~~~~~i~~I~~G-~~h~~~lt~~G~v~~~G~n~~gq 95 (372)
-|..+. +...=..|+|. ..-.++|++||.+|.-+--+.|.
T Consensus 8 ~Pa~i~-~~~tS~~Vs~~~~gs~ValS~dg~l~G~ai~~sG~ 48 (81)
T PF03785_consen 8 HPASIN-LGQTSISVSCDVPGSYVALSQDGDLYGKAIVNSGN 48 (81)
T ss_dssp --SEEE-TT-SEEEEEESSTT-EEEEEETTEEEEEEE-BTTE
T ss_pred cccccc-ccccEEEEEecCCCcEEEEecCCEEEEEEEecCce
Confidence 344444 33457789999 88889999999999998555554
No 70
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=34.91 E-value=1.6e+02 Score=28.62 Aligned_cols=75 Identities=13% Similarity=0.132 Sum_probs=38.9
Q ss_pred eEEEEeeCCCcEEEEeCCCCCccCCCCCCCCCCCCccceeecCCCCCCeEEEecCCCceEEEecCCcEEEEeCCCCCCCc
Q 042844 18 RIFMRSASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLG 97 (372)
Q Consensus 18 ~~~~~l~~~g~vy~wG~n~~gqLG~~~~~~~~~~~~~~p~~i~~~~~~i~~I~~G~~h~~~lt~~G~v~~~G~n~~gqlg 97 (372)
..++....++.+|++..+..-++-.- -+++-..++... -=++.+-...+.+-=+.+|.||.|+.+....+.
T Consensus 398 ~~~~aQs~dN~i~ifs~~~~~r~nkk--------K~feGh~vaGys-~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~ 468 (503)
T KOG0282|consen 398 KWFAAQSMDNYIAIFSTVPPFRLNKK--------KRFEGHSVAGYS-CQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVS 468 (503)
T ss_pred CeehhhccCceEEEEecccccccCHh--------hhhcceeccCce-eeEEEcCCCCeEEeecCCccEEEeechhhhhhh
Confidence 45566667777777776543333111 123333333221 112223333344445688999999988755544
Q ss_pred CCCC
Q 042844 98 RGAL 101 (372)
Q Consensus 98 ~~~~ 101 (372)
....
T Consensus 469 ~lka 472 (503)
T KOG0282|consen 469 KLKA 472 (503)
T ss_pred cccc
Confidence 4333
No 71
>PF06204 CBM_X: Putative carbohydrate binding domain ; InterPro: IPR009342 This domain is conserved in enzymes that have carbohydrates as substrate, and may be a carbohydrate-binding domain.; PDB: 3ACT_B 2CQT_A 3QFY_B 3QFZ_A 2CQS_A 3QG0_B 3AFJ_A 3ACS_A 1V7V_A 1V7X_A ....
Probab=33.78 E-value=1.3e+02 Score=20.64 Aligned_cols=31 Identities=26% Similarity=0.497 Sum_probs=22.3
Q ss_pred CCCCeEEEecCCCceEEEecCCcEEEEeCCC
Q 042844 62 LPSDVTSVSAGHYHSLAVTNNGAVWAWGRNN 92 (372)
Q Consensus 62 ~~~~i~~I~~G~~h~~~lt~~G~v~~~G~n~ 92 (372)
.+.+.+.+-+...++++|++.|.-|+|-.+.
T Consensus 23 tp~P~~n~LsNg~y~~mvt~~G~GySw~~~~ 53 (66)
T PF06204_consen 23 TPAPWVNVLSNGSYGVMVTNSGSGYSWAKNS 53 (66)
T ss_dssp -SS--EEEE-SSSEEEEEETTSBEEEEES-T
T ss_pred CCCCEEEEeeCCcEEEEEcCCCceeeccccc
Confidence 3456778888889999999999999998654
No 72
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=31.82 E-value=1.3e+02 Score=27.02 Aligned_cols=62 Identities=15% Similarity=0.082 Sum_probs=34.9
Q ss_pred CCeeEEEecCCCEEEEe-CCC-CCccCCC----CCCCcccceeeccccEEEe--cCCCceEEEEeeccccccCCCccEEE
Q 042844 273 FDHSLVLGRNGVLLSCG-SNV-YGQLGRE----KQDMGMFPVDINFHPVSIS--SGLGHSLAICEVRSSNVTGGARGIVS 344 (372)
Q Consensus 273 ~~h~~alt~~G~vy~wG-~n~-~gqlG~~----~~~~~~~P~~v~~~i~~ia--~G~~~s~~l~~~~~~~~~~~~g~v~~ 344 (372)
..|+++.- ++++|+|| +|+ .|.+-.- .+...++.. .|.... +-+.|+.++- .+.+|.
T Consensus 80 YGHtvV~y-~d~~yvWGGRND~egaCN~Ly~fDp~t~~W~~p----~v~G~vPgaRDGHsAcV~----------gn~Myi 144 (392)
T KOG4693|consen 80 YGHTVVEY-QDKAYVWGGRNDDEGACNLLYEFDPETNVWKKP----EVEGFVPGARDGHSACVW----------GNQMYI 144 (392)
T ss_pred cCceEEEE-cceEEEEcCccCcccccceeeeecccccccccc----ceeeecCCccCCceeeEE----------CcEEEE
Confidence 45776655 56899998 344 3333111 122222211 344443 3467888888 678999
Q ss_pred ecCCC
Q 042844 345 WGWNR 349 (372)
Q Consensus 345 wG~n~ 349 (372)
+|-.+
T Consensus 145 FGGye 149 (392)
T KOG4693|consen 145 FGGYE 149 (392)
T ss_pred ecChH
Confidence 98644
No 73
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=31.29 E-value=1.7e+02 Score=25.90 Aligned_cols=75 Identities=13% Similarity=0.065 Sum_probs=39.0
Q ss_pred Eeec-CcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccccceEecccCCCcEE-EEEecCCeEEEEeCCCcEEEEeCCC
Q 042844 124 AFAS-GVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIV-KVSFGWGHALAQTEDGKLFGWGYSA 200 (372)
Q Consensus 124 i~~g-~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~p~~i~~~~~~~i~-~I~~g~~~~~~lt~~g~vy~wG~n~ 200 (372)
+..+ ++-++.+..||+|++.|-....-...-+.......+..+..+.. .. ......+=.+.|..+|+||.|+.+.
T Consensus 114 m~~~RWYpT~~~L~DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~--~~~~~~~nlYP~~~llPdG~lFi~an~~ 190 (243)
T PF07250_consen 114 MQSGRWYPTATTLPDGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQ--TSDTLPNNLYPFVHLLPDGNLFIFANRG 190 (243)
T ss_pred ccCCCccccceECCCCCEEEEeCcCCCcccccCCccCCCCceeeecchh--hhccCccccCceEEEcCCCCEEEEEcCC
Confidence 4444 45688899999999998654111110000000111111111111 11 1223344477888899999999864
No 74
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=30.96 E-value=1.3e+02 Score=27.79 Aligned_cols=58 Identities=19% Similarity=0.351 Sum_probs=37.6
Q ss_pred EEEecCCcEEEEeCCCCCCCcCCCCCCCCccCCCceeecCCceeEEEEeecCc--EEEEEeCCCcEEEEeC
Q 042844 77 LAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGV--VSSAIGDDGSLWVWGK 145 (372)
Q Consensus 77 ~~lt~~G~v~~~G~n~~gqlg~~~~~~~~~~~~p~~i~~~~~~~i~~i~~g~~--~~~~lt~~g~v~~~G~ 145 (372)
++..+.|+||.|-..+. .+...++.........|.|.+-... ..+++.+++.||.|-.
T Consensus 323 a~gnq~g~v~vwdL~~~-----------ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdr 382 (385)
T KOG1034|consen 323 ALGNQSGKVYVWDLDNN-----------EPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDR 382 (385)
T ss_pred hhccCCCcEEEEECCCC-----------CCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEe
Confidence 44568899999984332 1124556666556666666655544 4566788999999953
No 75
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=30.52 E-value=8.1e+02 Score=27.42 Aligned_cols=60 Identities=13% Similarity=0.091 Sum_probs=34.5
Q ss_pred EEEecCCcEEEEeCCCCCCCcCCCCCCCCccCCCceeecCCceeEEEEeec-----CcEEEEEeCCCcEEEEeCC
Q 042844 77 LAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFAS-----GVVSSAIGDDGSLWVWGKS 146 (372)
Q Consensus 77 ~~lt~~G~v~~~G~n~~gqlg~~~~~~~~~~~~p~~i~~~~~~~i~~i~~g-----~~~~~~lt~~g~v~~~G~n 146 (372)
+-+|-|.+||.|--++.+++..-..... .... +..++..+| -.|.++|.+.-+|+..|-.
T Consensus 93 aWiTiDn~L~lWny~~~~e~~~~d~~sh-tIl~---------V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~ 157 (1311)
T KOG1900|consen 93 AWITIDNNLFLWNYESDNELAEYDGLSH-TILK---------VGLVKPKPGVFVPEIQHLLVVATPVEIVILGVS 157 (1311)
T ss_pred eEEEeCCeEEEEEcCCCCccccccchhh-hhee---------eeeecCCCCcchhhhheeEEecccceEEEEEEE
Confidence 5689999999999877554332111100 0001 122222222 2477888888899988854
No 76
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=30.06 E-value=5e+02 Score=24.90 Aligned_cols=64 Identities=11% Similarity=0.042 Sum_probs=37.8
Q ss_pred eeeeEEEEeeCCCcEEEEeCCCCCccCCCCCCCCCCCCccceeecCC-CCCCeEEEecCCCceEEEecCCcEEEEe
Q 042844 15 LTSRIFMRSASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPG-LPSDVTSVSAGHYHSLAVTNNGAVWAWG 89 (372)
Q Consensus 15 ~~~~~~~~l~~~g~vy~wG~n~~gqLG~~~~~~~~~~~~~~p~~i~~-~~~~i~~I~~G~~h~~~lt~~G~v~~~G 89 (372)
...+..+++.++|.++++- -+|.. .. .....+.... ...++-.+..+.+-.++||+++++|.-=
T Consensus 89 t~~e~LvvV~~dG~v~vy~--~~G~~---~f------sl~~~i~~~~v~e~~i~~~~~~~~GivvLt~~~~~~~v~ 153 (410)
T PF04841_consen 89 TDDEELVVVQSDGTVRVYD--LFGEF---QF------SLGEEIEEEKVLECRIFAIWFYKNGIVVLTGNNRFYVVN 153 (410)
T ss_pred CCCCeEEEEEcCCEEEEEe--CCCce---ee------chhhhccccCcccccccccccCCCCEEEECCCCeEEEEe
Confidence 3456788888999998873 33443 10 0011111111 1124555566767789999999999884
No 77
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=29.70 E-value=1.5e+02 Score=26.14 Aligned_cols=38 Identities=18% Similarity=0.370 Sum_probs=25.9
Q ss_pred CccceeecCC-CCCCeEEEecCCCceEEEecCCcEEEEe
Q 042844 52 DAYEPTRVPG-LPSDVTSVSAGHYHSLAVTNNGAVWAWG 89 (372)
Q Consensus 52 ~~~~p~~i~~-~~~~i~~I~~G~~h~~~lt~~G~v~~~G 89 (372)
..++|+++-. ....|.+|.....-.++=..||.+-.+-
T Consensus 133 ~s~ePiQildea~D~V~Si~v~~heIvaGS~DGtvRtyd 171 (307)
T KOG0316|consen 133 RSFEPIQILDEAKDGVSSIDVAEHEIVAGSVDGTVRTYD 171 (307)
T ss_pred CCCCccchhhhhcCceeEEEecccEEEeeccCCcEEEEE
Confidence 4566776632 2235888888888788888888876654
No 78
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=29.09 E-value=5.3e+02 Score=24.83 Aligned_cols=26 Identities=23% Similarity=0.298 Sum_probs=17.5
Q ss_pred EEEEEecCCeEEEE--eCCCcEEEEeCC
Q 042844 174 IVKVSFGWGHALAQ--TEDGKLFGWGYS 199 (372)
Q Consensus 174 i~~I~~g~~~~~~l--t~~g~vy~wG~n 199 (372)
|.+.-.|.+-.++. ++|++||.|-.-
T Consensus 443 IrSCFgg~~~~fiaSGSED~kvyIWhr~ 470 (519)
T KOG0293|consen 443 IRSCFGGGNDKFIASGSEDSKVYIWHRI 470 (519)
T ss_pred EEeccCCCCcceEEecCCCceEEEEEcc
Confidence 44555555545555 678999999864
No 79
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=29.00 E-value=7.3e+02 Score=26.44 Aligned_cols=66 Identities=14% Similarity=0.135 Sum_probs=38.1
Q ss_pred eEEEEeeCCCc-EEEEeCCCCCccCCCCCCCCCCCCccceeecCCCCCCeEEEecCCCceEEEecCCcE--EEEe
Q 042844 18 RIFMRSASGTA-VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAV--WAWG 89 (372)
Q Consensus 18 ~~~~~l~~~g~-vy~wG~n~~gqLG~~~~~~~~~~~~~~p~~i~~~~~~i~~I~~G~~h~~~lt~~G~v--~~~G 89 (372)
...+..+.+|+ |++||.+..=+ .-.. ..+...|-.|......|..|+|-.+|.+.=++++.| |-++
T Consensus 16 ~t~i~~d~~gefi~tcgsdg~ir--~~~~----~sd~e~P~ti~~~g~~v~~ia~~s~~f~~~s~~~tv~~y~fp 84 (933)
T KOG1274|consen 16 LTLICYDPDGEFICTCGSDGDIR--KWKT----NSDEEEPETIDISGELVSSIACYSNHFLTGSEQNTVLRYKFP 84 (933)
T ss_pred eEEEEEcCCCCEEEEecCCCceE--Eeec----CCcccCCchhhccCceeEEEeecccceEEeeccceEEEeeCC
Confidence 44555555555 56666553211 1110 112245555543445799999999999888888875 4444
No 80
>PF03785 Peptidase_C25_C: Peptidase family C25, C terminal ig-like domain; InterPro: IPR005536 This domain is found in almost all members of MEROPS peptidase family C25, (clan CD). Peptidase family C25 is a protein family found in the bacteria Porphyromonas gingivalis (Bacteroides gingivalis) a Gram-negative anaerobic bacterial species strongly associated with adult periodontitis. One of its distinguishing characteristics and putative virulence properties is the ability to agglutinate erythrocytes []. It is a highly proteolytic organism which metabolises small peptides and amino acids. Indirect evidence suggests that the proteases produced by this microorganism constitute an important virulence factor []. Protease-encoding genes have been shown to contain multiple copies of repeated nucleotide sequences. These conserved sequences have also been found in haemagglutinin genes [].; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 1CVR_A.
Probab=28.59 E-value=1.2e+02 Score=21.65 Aligned_cols=39 Identities=18% Similarity=0.331 Sum_probs=28.0
Q ss_pred eeeec-CccEEEEEec-CCeeEEEecCCCEEEEeCCCCCcc
Q 042844 258 PFLVE-GVEVVDIACG-FDHSLVLGRNGVLLSCGSNVYGQL 296 (372)
Q Consensus 258 p~~i~-~~~i~~I~~G-~~h~~alt~~G~vy~wG~n~~gql 296 (372)
|-.+. ...=..|+|. ....++|++||.+|.-+--+.|++
T Consensus 9 Pa~i~~~~tS~~Vs~~~~gs~ValS~dg~l~G~ai~~sG~a 49 (81)
T PF03785_consen 9 PASINLGQTSISVSCDVPGSYVALSQDGDLYGKAIVNSGNA 49 (81)
T ss_dssp -SEEETT-SEEEEEESSTT-EEEEEETTEEEEEEE-BTTEE
T ss_pred cccccccccEEEEEecCCCcEEEEecCCEEEEEEEecCceE
Confidence 44555 5566789999 889999999999999886556655
No 81
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=28.24 E-value=4.6e+02 Score=23.89 Aligned_cols=17 Identities=12% Similarity=0.415 Sum_probs=11.6
Q ss_pred ceEEEecCCcEEEEeCC
Q 042844 75 HSLAVTNNGAVWAWGRN 91 (372)
Q Consensus 75 h~~~lt~~G~v~~~G~n 91 (372)
+..+..-+++||.+|-.
T Consensus 164 ~~~~~~~~~~iYv~GG~ 180 (323)
T TIGR03548 164 QPVCVKLQNELYVFGGG 180 (323)
T ss_pred cceEEEECCEEEEEcCC
Confidence 33445567899999953
No 82
>PF06462 Hyd_WA: Propeller; InterPro: IPR006624 Tectonins I and II are two dominant proteins in the nuclei and nuclear matrix from plasmodia of Physarum polycephalum (Slime mold) which encode 217 and 353 amino acids, respectively. Tectonin I is homologous to the C-terminal two-thirds of tectonin II. Both proteins contain six tandem repeats that are each 33-37 amino acids in length and define a new consensus sequence. Homologous repeats are found in L-6, a bacterial lipopolysaccharide-binding lectin from horseshoe crab hemocytes. The repetitive sequences of the tectonins and L-6 are reminiscent of the WD repeats of the beta-subunit of G proteins, suggesting that they form beta-propeller domains. The tectonins may be lectins that function as part of a transmembrane signalling complex during phagocytosis [].
Probab=28.10 E-value=71 Score=18.22 Aligned_cols=14 Identities=29% Similarity=0.416 Sum_probs=11.3
Q ss_pred CeEEEEeCCCcEEE
Q 042844 182 GHALAQTEDGKLFG 195 (372)
Q Consensus 182 ~~~~~lt~~g~vy~ 195 (372)
++..|++.+|+||.
T Consensus 1 ~~VWav~~~G~v~~ 14 (32)
T PF06462_consen 1 DQVWAVTSDGSVYF 14 (32)
T ss_pred CeEEEEcCCCCEEE
Confidence 35778999999885
No 83
>PF14517 Tachylectin: Tachylectin; PDB: 1TL2_A.
Probab=27.98 E-value=4.2e+02 Score=23.26 Aligned_cols=23 Identities=35% Similarity=0.267 Sum_probs=12.1
Q ss_pred EEEEeecCcE-EEEEeCCCcEEEE
Q 042844 121 VCAAFASGVV-SSAIGDDGSLWVW 143 (372)
Q Consensus 121 i~~i~~g~~~-~~~lt~~g~v~~~ 143 (372)
+..+.++..- ..+++.+|++|.+
T Consensus 132 f~~vfa~~~GvLY~i~~dg~~~~~ 155 (229)
T PF14517_consen 132 FDAVFAGPNGVLYAITPDGRLYRR 155 (229)
T ss_dssp EEEEEE-TTS-EEEEETTE-EEEE
T ss_pred ceEEEeCCCccEEEEcCCCceEEe
Confidence 4445445443 5666777766665
No 84
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=27.98 E-value=1.1e+02 Score=26.82 Aligned_cols=63 Identities=11% Similarity=0.026 Sum_probs=0.0
Q ss_pred EEEecCCeeEEEecCCCEEEEeCCCCCccCCCCCCCcccceeeccccEEEecCCC--ceEEEEeeccccccCCCccEEEe
Q 042844 268 DIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFHPVSISSGLG--HSLAICEVRSSNVTGGARGIVSW 345 (372)
Q Consensus 268 ~I~~G~~h~~alt~~G~vy~wG~n~~gqlG~~~~~~~~~P~~v~~~i~~ia~G~~--~s~~l~~~~~~~~~~~~g~v~~w 345 (372)
.|.-...-.++.+.+|.||+|-.|.+|++ .-..+........-|..+.. -.++-.. +|+++.|
T Consensus 65 ~v~~~~~~~~vG~~dg~v~~~n~n~~g~~------~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~---------dg~ir~~ 129 (238)
T KOG2444|consen 65 RVVTASAKLMVGTSDGAVYVFNWNLEGAH------SDRVCSGEESIDLGIPNGRDSSLGCVGAQ---------DGRIRAC 129 (238)
T ss_pred eecccCceEEeecccceEEEecCCccchH------HHhhhcccccceeccccccccceeEEecc---------CCceeee
No 85
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=27.94 E-value=60 Score=20.22 Aligned_cols=10 Identities=20% Similarity=0.145 Sum_probs=9.0
Q ss_pred CccEEEecCC
Q 042844 339 ARGIVSWGWN 348 (372)
Q Consensus 339 ~g~v~~wG~n 348 (372)
++++|+||--
T Consensus 11 ~~kiyv~GG~ 20 (49)
T PF07646_consen 11 DGKIYVFGGY 20 (49)
T ss_pred CCEEEEECCc
Confidence 8999999876
No 86
>TIGR01062 parC_Gneg DNA topoisomerase IV, A subunit, proteobacterial. Operationally, topoisomerase IV is a type II topoisomerase required for the decatenation of chromosome segregation. Not every bacterium has both a topo II and a topo IV. The topo IV families of the Gram-positive bacteria and the Gram-negative bacteria appear not to represent a single clade among the type II topoisomerases, and are represented by separate models for this reason.
Probab=26.95 E-value=7.6e+02 Score=25.96 Aligned_cols=126 Identities=11% Similarity=0.095 Sum_probs=67.1
Q ss_pred eEEEecC--CCceEEEecCCcEEEEeCCCCCCCcCCCCCCCCccCCCce--eecCCceeEEEEeecCc--EEEEEeCCCc
Q 042844 66 VTSVSAG--HYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKR--VEGLDQVNVCAAFASGV--VSSAIGDDGS 139 (372)
Q Consensus 66 i~~I~~G--~~h~~~lt~~G~v~~~G~n~~gqlg~~~~~~~~~~~~p~~--i~~~~~~~i~~i~~g~~--~~~~lt~~g~ 139 (372)
++.+..+ ..+.+++|++|++|.+-.+.-. .|++. ..|.. +...++.+|+.+.+... ..+++|+.|.
T Consensus 527 L~~~~~~~t~d~LllfTs~Gr~yrf~v~eIP-~GR~a-------GgpV~~~L~L~~gE~Iv~~~~v~~~~~lLlaT~~Gy 598 (735)
T TIGR01062 527 EKAIIEGKSNQKVVFIDSTGRSYALDPDNLP-SARGQ-------GEPLTGKLLLPIGATITNILMYSPNQLLLMASDAGY 598 (735)
T ss_pred EEEEEEecCCCEEEEEECCCeEEEEEhHhcC-cCccC-------CceeEeeecCCCCCEEEEEEEecCCcEEEEEEcCCc
Confidence 4444333 3457889999999999765432 12211 12222 22234456776666543 4678888887
Q ss_pred EEEEeCCCCCCCCCCCCCcccccceEecccCCCcEEE--EEecC-CeEEEEeCCCcEEEEeCCCCCCCCC
Q 042844 140 LWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVK--VSFGW-GHALAQTEDGKLFGWGYSADGRIGN 206 (372)
Q Consensus 140 v~~~G~n~~gqlg~~~~~~~~~~p~~i~~~~~~~i~~--I~~g~-~~~~~lt~~g~vy~wG~n~~gqlg~ 206 (372)
.+..-...+-....+.. ... .++ .+..++. ...+. ++.+++|++|++..+-.+.-..+++
T Consensus 599 GKrt~lse~~~~~RaGK-gvi----~Lk--~~d~lv~v~~v~~~dd~V~liT~~GrlLrf~v~EIp~~gR 661 (735)
T TIGR01062 599 GFLCNFNDLIARNKAGK-ALI----NLP--ENASVIAPLPVNGDSDMIAAITEAGRMLVFPIDDLPELSK 661 (735)
T ss_pred EEEEEhHhccccCcCCe-EEE----EeC--CCCEEEEEEEEcCCCCEEEEEeCCCcEEEEEHHHCCccCC
Confidence 77665433221111000 000 011 1223332 22233 3688899999999998776555555
No 87
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=26.32 E-value=5.3e+02 Score=27.65 Aligned_cols=38 Identities=11% Similarity=0.172 Sum_probs=31.5
Q ss_pred eeEEEEeecCcEEEEEeCCCcEEEEeCCCCCCCCCCCC
Q 042844 119 VNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKD 156 (372)
Q Consensus 119 ~~i~~i~~g~~~~~~lt~~g~v~~~G~n~~gqlg~~~~ 156 (372)
+.--+|+...+..++.+.+|.|-.|-.+..+|+...+.
T Consensus 315 i~~fDiSsn~~alafgd~~g~v~~wa~~~~P~Fn~~s~ 352 (1118)
T KOG1275|consen 315 ISAFDISSNGDALAFGDHEGHVNLWADRPQPQFNEYSR 352 (1118)
T ss_pred ceeEEecCCCceEEEecccCcEeeecCCCCCccCCCcc
Confidence 56778999999999999999999999888887765433
No 88
>PRK13979 DNA topoisomerase IV subunit A; Provisional
Probab=26.05 E-value=8.8e+02 Score=26.42 Aligned_cols=161 Identities=14% Similarity=0.052 Sum_probs=0.0
Q ss_pred EecCCCceEEEecCCcEEEEeCCCCCCCcCCCCCCCCccCCCceeec-CC--ceeEEEEeecCcE-----EEEEeCCCcE
Q 042844 69 VSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEG-LD--QVNVCAAFASGVV-----SSAIGDDGSL 140 (372)
Q Consensus 69 I~~G~~h~~~lt~~G~v~~~G~n~~gqlg~~~~~~~~~~~~p~~i~~-~~--~~~i~~i~~g~~~-----~~~lt~~g~v 140 (372)
.+....+.+++|+.|++|.--...-........- ..-..+-. +. +.+|+.+.+-..+ .+++|++|.|
T Consensus 559 ~~~T~d~LL~FTn~Gkvy~ikvy~IPe~~~~~~G-----~~I~nll~~~~~~~EkIv~i~~~~ef~~~~~lv~~Tk~G~V 633 (957)
T PRK13979 559 QSNTKDTLLIFTDKGNMYQIKGINIPEFKWKEKG-----ERLDEIIKGIDLESEKIIEAYSIEDFTPQKDFIFITDSGGI 633 (957)
T ss_pred EEcCCCEEEEEECCCeEEEEEeeeCCCCCcCCCC-----eEHHHhhhccCCCCCeEEEEEEeccCCCCCEEEEEECCCeE
Q ss_pred EEEeCCCCCCCCCCCCCcccccceEecccCCCcEEEEEecC-----CeEEEEeCCCcEEEEeCCCCCCCCCCCCCCcCCC
Q 042844 141 WVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGW-----GHALAQTEDGKLFGWGYSADGRIGNLGKALESSP 215 (372)
Q Consensus 141 ~~~G~n~~gqlg~~~~~~~~~~p~~i~~~~~~~i~~I~~g~-----~~~~~lt~~g~vy~wG~n~~gqlg~~~~~~~~~~ 215 (372)
.-.-...+ ...... -.-+..-.++.++.+.... .+.+++|++|.+.-|-.+.-..+|+...-...
T Consensus 634 Krt~L~ef-------~~~r~~-~~aikL~e~DeLV~v~~~~~~~~~~~Iil~Tk~G~airF~~~eVr~mGR~a~GVkg-- 703 (957)
T PRK13979 634 KKTSLDKF-------VTNYTK-LMALKLKKGEKLIKVKLVDRTREEKFIKIKTKKGLSFTVEEPELEPVDRNIIGYQL-- 703 (957)
T ss_pred EEEehhhc-------cccccc-eEEEEcCCCCEEEEEEEcCCCCCCCEEEEEeCCCcEEEEEHHHCcccCCCCcCeee--
Q ss_pred CCCCcCCCCCCccccchhhHHHhhhhhhcccccccCCCceeceeeecCccEEEEEecC----------------------
Q 042844 216 LDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGF---------------------- 273 (372)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~i~~I~~G~---------------------- 273 (372)
-..-+.+.|+....-.
T Consensus 704 ------------------------------------------I~L~~~D~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 741 (957)
T PRK13979 704 ------------------------------------------FDLLPNDSIKKVDFCDNYEYKEFYVNINKKGIIKISDK 741 (957)
T ss_pred ------------------------------------------EeeCCCCEEEEEEEEhhhhhcchhhhcccccceeeccc
Q ss_pred -------------CeeEEEecCCCEE
Q 042844 274 -------------DHSLVLGRNGVLL 286 (372)
Q Consensus 274 -------------~h~~alt~~G~vy 286 (372)
++.+++|+.|++|
T Consensus 742 ~~~~~~~i~~~T~d~Ll~FTn~Gkvy 767 (957)
T PRK13979 742 DNKSSISVFTNSSKNLLIFSDEGKVY 767 (957)
T ss_pred ccccccceeecCCceEEEEecCCeEE
No 89
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=25.57 E-value=5.8e+02 Score=24.10 Aligned_cols=115 Identities=14% Similarity=0.220 Sum_probs=52.5
Q ss_pred CeEEEecCCC-ce-EEEecCCc-EEEEeCCCCCCCcCCCCCCCCccCCCceeecCCceeEEEEeecCc-EEEEEeCCCcE
Q 042844 65 DVTSVSAGHY-HS-LAVTNNGA-VWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGV-VSSAIGDDGSL 140 (372)
Q Consensus 65 ~i~~I~~G~~-h~-~~lt~~G~-v~~~G~n~~gqlg~~~~~~~~~~~~p~~i~~~~~~~i~~i~~g~~-~~~~lt~~g~v 140 (372)
.+..|..|.. |. ++.+.||+ +|..+. .+.+ ..+.......+..|..|.. ..++++.||+.
T Consensus 28 ~~~~i~~~~~~h~~~~~s~Dgr~~yv~~r--dg~v--------------sviD~~~~~~v~~i~~G~~~~~i~~s~DG~~ 91 (369)
T PF02239_consen 28 VVARIPTGGAPHAGLKFSPDGRYLYVANR--DGTV--------------SVIDLATGKVVATIKVGGNPRGIAVSPDGKY 91 (369)
T ss_dssp EEEEEE-STTEEEEEE-TT-SSEEEEEET--TSEE--------------EEEETTSSSEEEEEE-SSEEEEEEE--TTTE
T ss_pred EEEEEcCCCCceeEEEecCCCCEEEEEcC--CCeE--------------EEEECCcccEEEEEecCCCcceEEEcCCCCE
Confidence 3666766543 54 55678886 787753 2322 2233334445666666654 57888999985
Q ss_pred EEEeCCCCCCCCCCCCCcccccceEe-c------ccCCCcEEEEEecCC---eEEEEeCCCcEEEEe
Q 042844 141 WVWGKSKRGQLGLGKDITEAIVPSRV-E------ALAGEKIVKVSFGWG---HALAQTEDGKLFGWG 197 (372)
Q Consensus 141 ~~~G~n~~gqlg~~~~~~~~~~p~~i-~------~~~~~~i~~I~~g~~---~~~~lt~~g~vy~wG 197 (372)
..-+...-+++-.-+. ....|... + .....++..|.+... +.+.+.+.++||.--
T Consensus 92 ~~v~n~~~~~v~v~D~--~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVd 156 (369)
T PF02239_consen 92 VYVANYEPGTVSVIDA--ETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVD 156 (369)
T ss_dssp EEEEEEETTEEEEEET--TT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEE
T ss_pred EEEEecCCCceeEecc--ccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEE
Confidence 5544333233322111 11111111 1 012235556654333 456667778887764
No 90
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=25.35 E-value=6.3e+02 Score=24.47 Aligned_cols=64 Identities=16% Similarity=0.207 Sum_probs=38.7
Q ss_pred eEEEEeeCCCcEEEEeCCCCCccCCCCCCCCCCCCccceeecCCCC---CCeEEEecCCCceEEE--ecCCcEEEEeC
Q 042844 18 RIFMRSASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLP---SDVTSVSAGHYHSLAV--TNNGAVWAWGR 90 (372)
Q Consensus 18 ~~~~~l~~~g~vy~wG~n~~gqLG~~~~~~~~~~~~~~p~~i~~~~---~~i~~I~~G~~h~~~l--t~~G~v~~~G~ 90 (372)
.+.+++-.||-+++-|. ..|++-.-+ ...+..+..|| .+|+.|+.+.+-.... .+|+.|..|..
T Consensus 350 ~ts~~fHpDgLifgtgt-~d~~vkiwd--------lks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDL 418 (506)
T KOG0289|consen 350 YTSAAFHPDGLIFGTGT-PDGVVKIWD--------LKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDL 418 (506)
T ss_pred eEEeeEcCCceEEeccC-CCceEEEEE--------cCCccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEe
Confidence 34444556666666655 234443322 23334444454 4799999998877554 46788999984
No 91
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.06 E-value=8.1e+02 Score=25.65 Aligned_cols=65 Identities=15% Similarity=0.075 Sum_probs=43.4
Q ss_pred ceeeeeeEEEEeeCCCcEEEEeCCCCCccCCCCCCCCCCCCccceeecCCCCCCeEEEecCCCceEEEecCCcEEEEe
Q 042844 12 VNVLTSRIFMRSASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWG 89 (372)
Q Consensus 12 ~~~~~~~~~~~l~~~g~vy~wG~n~~gqLG~~~~~~~~~~~~~~p~~i~~~~~~i~~I~~G~~h~~~lt~~G~v~~~G 89 (372)
+.+.-.+-.+.+..+|.++++|. +|... ....+-.+....+|+....-.+-.++||.+|+++.--
T Consensus 89 mgWs~~eeLI~v~k~g~v~Vy~~-----~ge~i--------e~~svg~e~~~~~I~ec~~f~~GVavlt~~g~v~~i~ 153 (829)
T KOG2280|consen 89 MGWSDDEELICVQKDGTVHVYGL-----LGEFI--------ESNSVGFESQMSDIVECRFFHNGVAVLTVSGQVILIN 153 (829)
T ss_pred ecccCCceEEEEeccceEEEeec-----chhhh--------cccccccccccCceeEEEEecCceEEEecCCcEEEEc
Confidence 44455667888899999999985 22222 1111222334456777777778889999999999864
No 92
>TIGR01063 gyrA DNA gyrase, A subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV.
Probab=23.01 E-value=9.3e+02 Score=25.62 Aligned_cols=166 Identities=11% Similarity=-0.008 Sum_probs=82.6
Q ss_pred eeeeeeEEEEeeCCCcEEEEeCCCCCccCCCCCCCCCCCCcccee--ecCC-CCCCeEEEecC-----CCceEEEecCCc
Q 042844 13 NVLTSRIFMRSASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPT--RVPG-LPSDVTSVSAG-----HYHSLAVTNNGA 84 (372)
Q Consensus 13 ~~~~~~~~~~l~~~g~vy~wG~n~~gqLG~~~~~~~~~~~~~~p~--~i~~-~~~~i~~I~~G-----~~h~~~lt~~G~ 84 (372)
.+-+...+++.|+.|++|..=.. ++.... ....=.|+ .++. -.++|+.+.+- ....+++|++|.
T Consensus 542 ~~~t~d~LllfTs~Grv~~l~~~---~IP~~~-----r~~~G~~i~~ll~L~~~E~Iv~~i~~~~~~~~~~lvliT~~Gy 613 (800)
T TIGR01063 542 VASTHDYLLFFTNRGKVYWLKVY---QIPEAS-----RTAKGKPIVNLLPLQPDERITAILSVKEFDDGLYLFFATKNGV 613 (800)
T ss_pred EecCCCeEEEEeCCCcEEEEEhh---hCcCCC-----cCCCCcCHHHhccCCCCCeEEEEEEeccCCCCCEEEEEeCCCE
Confidence 34556668899999999999332 222211 00111111 1221 12356666652 235688899998
Q ss_pred EEEEeCCCCCCCcCCCCCCCCccCCCceeecCCceeEEEEeecCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccccce
Q 042844 85 VWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPS 164 (372)
Q Consensus 85 v~~~G~n~~gqlg~~~~~~~~~~~~p~~i~~~~~~~i~~i~~g~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~p~ 164 (372)
+--.-.+.+........ .-..+..-+.......+....+.+++|++|++|.+-...--..+... ...
T Consensus 614 iKRi~l~~~~~~~r~G~-------~aiklke~D~lv~v~~~~~~d~lll~Ts~Gr~~r~~v~eIp~~gr~~------~Gv 680 (800)
T TIGR01063 614 VKKTSLTEFSNIRSNGI-------IAIKLDDGDELISVRLTSGDDEVMLGSKNGKAVRFPEEDVRPMGRAA------RGV 680 (800)
T ss_pred EEEEEhHHhhhhccCCc-------ccccCCCCCEEEEEEEeCCCCEEEEEECCCcEEEEEhhhcCCcCCCC------CCe
Confidence 87665433321111000 00001111111122233344568999999999988664432222211 111
Q ss_pred E-ecccCCCcEEEEEec--CCeEEEEeCCCcEEEEeCC
Q 042844 165 R-VEALAGEKIVKVSFG--WGHALAQTEDGKLFGWGYS 199 (372)
Q Consensus 165 ~-i~~~~~~~i~~I~~g--~~~~~~lt~~g~vy~wG~n 199 (372)
. +..-.+++|+.+.+- ..+.+++|++|.+.-.-..
T Consensus 681 ~~i~L~~~E~Vv~~~~v~~~~~ll~vT~~G~~Kr~~l~ 718 (800)
T TIGR01063 681 RGIKLKNEDFVVSLLVVSEESYLLIVTENGYGKRTSIE 718 (800)
T ss_pred ecccCCCCCEEEEEEEeccccEEEEEecCCcEEEEEHH
Confidence 1 222345667666542 3357778888877766543
No 93
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=22.99 E-value=3e+02 Score=24.06 Aligned_cols=18 Identities=28% Similarity=0.377 Sum_probs=14.2
Q ss_pred eEEEecCCCEEEEeCCCC
Q 042844 276 SLVLGRNGVLLSCGSNVY 293 (372)
Q Consensus 276 ~~alt~~G~vy~wG~n~~ 293 (372)
.++..-.|.+|+-|+|..
T Consensus 37 av~fhp~g~lyavgsnsk 54 (350)
T KOG0641|consen 37 AVAFHPAGGLYAVGSNSK 54 (350)
T ss_pred eEEecCCCceEEeccCCc
Confidence 356667899999999863
No 94
>PF13964 Kelch_6: Kelch motif
Probab=22.80 E-value=88 Score=19.42 Aligned_cols=13 Identities=23% Similarity=0.204 Sum_probs=10.6
Q ss_pred CccEEEecCCCCC
Q 042844 339 ARGIVSWGWNRSS 351 (372)
Q Consensus 339 ~g~v~~wG~n~~g 351 (372)
+++||++|-....
T Consensus 11 ~~~iyv~GG~~~~ 23 (50)
T PF13964_consen 11 GGKIYVFGGYDNS 23 (50)
T ss_pred CCEEEEECCCCCC
Confidence 7899999976664
No 95
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=21.41 E-value=5.1e+02 Score=22.34 Aligned_cols=17 Identities=29% Similarity=0.421 Sum_probs=12.8
Q ss_pred CeEEEEeCCCcEEEEeC
Q 042844 182 GHALAQTEDGKLFGWGY 198 (372)
Q Consensus 182 ~~~~~lt~~g~vy~wG~ 198 (372)
--.++++.+|+||+.-.
T Consensus 186 pDG~~vD~~G~l~va~~ 202 (246)
T PF08450_consen 186 PDGLAVDSDGNLWVADW 202 (246)
T ss_dssp EEEEEEBTTS-EEEEEE
T ss_pred CCcceEcCCCCEEEEEc
Confidence 45789999999998743
No 96
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=21.28 E-value=4.5e+02 Score=24.18 Aligned_cols=15 Identities=7% Similarity=0.189 Sum_probs=11.6
Q ss_pred EEEEeCCCcEEEEeC
Q 042844 131 SSAIGDDGSLWVWGK 145 (372)
Q Consensus 131 ~~~lt~~g~v~~~G~ 145 (372)
..+..-+++||++|-
T Consensus 315 ~~~~~~~~~iyv~GG 329 (346)
T TIGR03547 315 GVSVSWNNGVLLIGG 329 (346)
T ss_pred eEEEEcCCEEEEEec
Confidence 345677889999995
No 97
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=20.82 E-value=6.8e+02 Score=23.18 Aligned_cols=38 Identities=16% Similarity=0.134 Sum_probs=25.1
Q ss_pred cceeecCCCCCCeEEEecCCCceEEEecCC-cEEEEeCC
Q 042844 54 YEPTRVPGLPSDVTSVSAGHYHSLAVTNNG-AVWAWGRN 91 (372)
Q Consensus 54 ~~p~~i~~~~~~i~~I~~G~~h~~~lt~~G-~v~~~G~n 91 (372)
..++.-..+...|+.|..-..|.+++.++- .||.++.|
T Consensus 85 ~~~i~el~f~~~I~~V~l~r~riVvvl~~~I~VytF~~n 123 (346)
T KOG2111|consen 85 ERCIIELSFNSEIKAVKLRRDRIVVVLENKIYVYTFPDN 123 (346)
T ss_pred CcEEEEEEeccceeeEEEcCCeEEEEecCeEEEEEcCCC
Confidence 333333346678999999999998887654 34455543
No 98
>PLN02153 epithiospecifier protein
Probab=20.55 E-value=6.7e+02 Score=23.04 Aligned_cols=17 Identities=29% Similarity=0.683 Sum_probs=11.8
Q ss_pred CceEEEecCCcEEEEeCC
Q 042844 74 YHSLAVTNNGAVWAWGRN 91 (372)
Q Consensus 74 ~h~~~lt~~G~v~~~G~n 91 (372)
.|++++ .++++|.+|-.
T Consensus 130 ~~~~~~-~~~~iyv~GG~ 146 (341)
T PLN02153 130 FHSMAS-DENHVYVFGGV 146 (341)
T ss_pred eeEEEE-ECCEEEEECCc
Confidence 555554 56789999854
No 99
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=20.36 E-value=7.3e+02 Score=23.37 Aligned_cols=17 Identities=24% Similarity=0.337 Sum_probs=13.5
Q ss_pred CCeEEEEeCCCcEEEEe
Q 042844 181 WGHALAQTEDGKLFGWG 197 (372)
Q Consensus 181 ~~~~~~lt~~g~vy~wG 197 (372)
..+.++.+.+|+||++.
T Consensus 376 ~~~l~v~t~~G~l~~~~ 392 (394)
T PRK11138 376 DDKLLIQARDGTVYAIT 392 (394)
T ss_pred CCEEEEEeCCceEEEEe
Confidence 45788888999999874
No 100
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.19 E-value=1.4e+02 Score=32.04 Aligned_cols=35 Identities=20% Similarity=0.414 Sum_probs=24.3
Q ss_pred CccEEEEE-ecCCeeEEEe--cCCCEEEEeCCCCCccC
Q 042844 263 GVEVVDIA-CGFDHSLVLG--RNGVLLSCGSNVYGQLG 297 (372)
Q Consensus 263 ~~~i~~I~-~G~~h~~alt--~~G~vy~wG~n~~gqlG 297 (372)
..-|++++ |..+--++|+ .|+++++|+-|.-..|+
T Consensus 253 ~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~ 290 (1049)
T KOG0307|consen 253 QRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLG 290 (1049)
T ss_pred ccceeeeccCCCCchhhhcccCCCCeeEecCCCceEee
Confidence 55666664 6666445555 48999999999866665
No 101
>PF13938 DUF4213: Domain of unknown function (DUF4213); PDB: 3NPG_A 3L5O_B.
Probab=20.16 E-value=1.5e+02 Score=21.28 Aligned_cols=23 Identities=13% Similarity=-0.000 Sum_probs=19.1
Q ss_pred CCceeEEEEeecCcEEEEEeCCC
Q 042844 116 LDQVNVCAAFASGVVSSAIGDDG 138 (372)
Q Consensus 116 ~~~~~i~~i~~g~~~~~~lt~~g 138 (372)
.++.+|+++..|...+++.+++|
T Consensus 9 ~~~~~V~~~~iG~~~t~V~~~~G 31 (87)
T PF13938_consen 9 APDIRVEDVCIGLHWTAVELSDG 31 (87)
T ss_dssp CGC-EEEEEEEBSSEEEEEETT-
T ss_pred CCCCEEEEEEEcCCEEEEEeCCC
Confidence 44678999999999999999998
Done!