Query 042844
Match_columns 372
No_of_seqs 161 out of 1678
Neff 9.6
Searched_HMMs 29240
Date Mon Mar 25 17:43:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042844.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042844hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4d9s_A UVB-resistance protein 100.0 4.3E-62 1.5E-66 465.7 33.8 301 10-371 70-381 (406)
2 3kci_A Probable E3 ubiquitin-p 100.0 1.3E-61 4.4E-66 460.0 28.9 299 12-371 57-369 (389)
3 4d9s_A UVB-resistance protein 100.0 8.5E-61 2.9E-65 456.7 33.8 296 12-368 20-326 (406)
4 3mvd_K Regulator of chromosome 100.0 4.5E-59 1.5E-63 447.7 34.5 301 8-367 75-394 (423)
5 1a12_A RCC1, regulator of chro 100.0 4.2E-59 1.4E-63 446.4 31.2 299 9-367 60-385 (413)
6 3kci_A Probable E3 ubiquitin-p 100.0 9.4E-60 3.2E-64 447.2 23.5 300 11-371 4-317 (389)
7 3of7_A Regulator of chromosome 100.0 2.4E-58 8.2E-63 448.1 30.2 307 10-368 69-427 (473)
8 1a12_A RCC1, regulator of chro 100.0 3.9E-58 1.3E-62 439.7 28.5 306 13-369 13-337 (413)
9 3mvd_K Regulator of chromosome 100.0 1.1E-56 3.6E-61 431.2 32.8 309 10-370 26-346 (423)
10 3of7_A Regulator of chromosome 100.0 3.3E-57 1.1E-61 440.1 26.6 293 15-357 17-349 (473)
11 3qhy_B Beta-lactamase inhibito 100.0 1E-48 3.6E-53 354.4 27.9 233 6-357 22-254 (282)
12 3qhy_B Beta-lactamase inhibito 100.0 1.7E-45 5.9E-50 333.3 24.9 214 27-357 2-215 (282)
13 4gbf_A Phikz131; 7-bladed beta 96.2 0.016 5.6E-07 49.3 7.9 71 120-204 310-380 (400)
14 4gbf_A Phikz131; 7-bladed beta 95.9 0.017 5.8E-07 49.2 6.6 72 64-151 309-380 (400)
15 1p22_A F-BOX/WD-repeat protein 95.6 1.4 4.8E-05 40.8 29.2 145 14-199 140-284 (435)
16 1p22_A F-BOX/WD-repeat protein 95.3 1.8 6.1E-05 40.0 26.0 231 15-352 181-417 (435)
17 2zwa_A Leucine carboxyl methyl 94.4 1.4 4.9E-05 44.0 17.0 19 272-290 597-615 (695)
18 2ovr_B FBW7, F-BOX/WD repeat p 93.4 4.8 0.00016 37.1 28.6 72 264-349 320-391 (445)
19 1k3i_A Galactose oxidase precu 92.6 8.6 0.00029 37.9 26.9 70 273-352 457-534 (656)
20 2ovr_B FBW7, F-BOX/WD repeat p 91.8 7.8 0.00027 35.6 27.7 141 14-198 126-266 (445)
21 3k26_A Polycomb protein EED; W 91.1 7.4 0.00025 34.1 19.4 145 17-199 34-191 (366)
22 3jrp_A Fusion protein of prote 89.9 9.9 0.00034 33.5 22.8 112 63-198 55-189 (379)
23 4aez_A CDC20, WD repeat-contai 89.7 11 0.00039 34.0 25.2 141 17-199 103-247 (401)
24 1gxr_A ESG1, transducin-like e 89.5 9.7 0.00033 32.9 26.2 107 64-199 142-254 (337)
25 2zwa_A Leucine carboxyl methyl 86.5 27 0.00093 34.7 18.6 18 181-198 598-615 (695)
26 1gxr_A ESG1, transducin-like e 85.5 17 0.00057 31.3 28.6 155 17-199 11-171 (337)
27 3no0_A DNA gyrase subunit A; D 84.0 20 0.0007 31.0 18.4 122 65-207 25-153 (276)
28 3jro_A Fusion protein of prote 83.6 38 0.0013 33.8 22.5 145 17-199 21-188 (753)
29 1yfq_A Cell cycle arrest prote 82.0 24 0.00083 30.4 24.7 150 18-200 24-179 (342)
30 2vpj_A Kelch-like protein 12; 80.9 17 0.00058 31.3 11.5 17 181-198 151-167 (301)
31 3zwl_B Eukaryotic translation 80.6 28 0.00096 30.2 21.5 64 124-199 183-248 (369)
32 1xip_A Nucleoporin NUP159; bet 80.3 19 0.00065 33.0 11.9 143 18-196 40-187 (388)
33 2xyi_A Probable histone-bindin 80.2 35 0.0012 31.1 24.2 159 17-200 141-309 (430)
34 3mkq_A Coatomer beta'-subunit; 79.1 53 0.0018 32.6 21.4 109 64-199 56-171 (814)
35 1xip_A Nucleoporin NUP159; bet 78.1 32 0.0011 31.4 12.7 36 162-200 80-115 (388)
36 3k26_A Polycomb protein EED; W 77.5 35 0.0012 29.6 20.9 153 18-200 86-260 (366)
37 1pgu_A Actin interacting prote 77.1 50 0.0017 31.2 16.4 141 17-198 456-612 (615)
38 3odt_A Protein DOA1; ubiquitin 76.3 34 0.0012 28.9 26.5 106 63-199 104-213 (313)
39 1suu_A DNA gyrase subunit A; t 76.3 40 0.0014 29.7 20.2 122 73-201 8-134 (312)
40 2aq5_A Coronin-1A; WD40 repeat 75.8 44 0.0015 29.9 25.6 154 13-199 40-206 (402)
41 3sfz_A APAF-1, apoptotic pepti 75.3 86 0.0029 33.0 18.5 66 128-200 1139-1207(1249)
42 1k3i_A Galactose oxidase precu 73.0 13 0.00044 36.6 9.2 57 129-198 245-305 (656)
43 2vpj_A Kelch-like protein 12; 72.4 45 0.0015 28.5 13.1 16 182-198 199-214 (301)
44 3no2_A Uncharacterized protein 71.7 47 0.0016 28.4 19.5 79 263-357 175-269 (276)
45 4aez_A CDC20, WD repeat-contai 71.3 57 0.002 29.2 25.3 139 18-199 147-292 (401)
46 3v7d_B Cell division control p 68.8 69 0.0024 29.1 28.2 156 13-199 128-298 (464)
47 3uc1_A DNA gyrase subunit A; D 68.2 65 0.0022 28.6 21.5 125 70-207 50-185 (327)
48 1yfq_A Cell cycle arrest prote 67.3 59 0.002 27.8 23.4 148 19-200 71-225 (342)
49 1r5m_A SIR4-interacting protei 66.1 70 0.0024 28.2 14.6 120 64-198 290-423 (425)
50 3f3f_A Nucleoporin SEH1; struc 65.9 61 0.0021 27.5 18.1 69 17-92 71-143 (351)
51 4a11_B DNA excision repair pro 64.5 74 0.0025 27.9 21.7 159 19-199 158-322 (408)
52 3mkq_A Coatomer beta'-subunit; 64.3 1.1E+02 0.0039 30.0 22.6 139 18-198 68-215 (814)
53 3mmy_A MRNA export factor; mRN 62.1 76 0.0026 27.3 24.1 138 18-199 55-198 (368)
54 1pgu_A Actin interacting prote 62.0 1.1E+02 0.0036 28.9 21.0 109 64-199 161-282 (615)
55 3mmy_A MRNA export factor; mRN 61.6 78 0.0027 27.2 20.0 109 64-199 40-159 (368)
56 2pm9_A Protein WEB1, protein t 61.3 87 0.003 27.7 17.1 110 64-199 166-293 (416)
57 3zwl_B Eukaryotic translation 61.1 80 0.0027 27.1 26.7 151 18-199 45-205 (369)
58 3v7d_B Cell division control p 61.0 97 0.0033 28.1 26.8 155 18-200 218-381 (464)
59 4ery_A WD repeat-containing pr 58.7 84 0.0029 26.6 21.0 139 18-199 36-179 (312)
60 3i2n_A WD repeat-containing pr 57.1 93 0.0032 26.6 23.1 140 18-199 81-242 (357)
61 3uc1_A DNA gyrase subunit A; D 56.4 1.1E+02 0.0037 27.1 23.8 168 13-201 49-229 (327)
62 3vl1_A 26S proteasome regulato 55.7 1.1E+02 0.0038 27.1 21.6 240 17-345 151-415 (420)
63 1sq9_A Antiviral protein SKI8; 55.0 1.1E+02 0.0037 26.8 19.9 121 63-199 16-156 (397)
64 3sfz_A APAF-1, apoptotic pepti 54.7 2.1E+02 0.0072 30.0 22.4 77 265-350 1129-1208(1249)
65 3jrp_A Fusion protein of prote 54.7 1E+02 0.0036 26.5 22.5 147 17-199 69-239 (379)
66 3p6j_A De novo designed beta-t 54.6 71 0.0024 24.5 9.0 66 64-142 72-138 (142)
67 3odt_A Protein DOA1; ubiquitin 52.7 1E+02 0.0035 25.7 27.0 138 17-197 29-171 (313)
68 3ei3_B DNA damage-binding prot 49.5 1.3E+02 0.0046 26.2 21.1 108 63-199 118-235 (383)
69 2aq5_A Coronin-1A; WD40 repeat 48.6 1.4E+02 0.0049 26.3 21.4 117 66-199 37-162 (402)
70 3i2n_A WD repeat-containing pr 47.3 1.3E+02 0.0046 25.6 25.7 111 64-199 66-198 (357)
71 4asc_A Kelch repeat and BTB do 47.0 41 0.0014 29.1 6.7 16 182-198 91-106 (315)
72 3jro_A Fusion protein of prote 46.7 2.3E+02 0.0077 28.0 22.3 148 17-200 67-238 (753)
73 4g56_B MGC81050 protein; prote 46.6 1.5E+02 0.0051 25.9 25.4 108 64-199 140-257 (357)
74 3f3f_A Nucleoporin SEH1; struc 45.2 1.4E+02 0.0047 25.1 26.5 112 17-146 23-142 (351)
75 3ii7_A Kelch-like protein 7; p 44.2 1.5E+02 0.005 25.2 12.7 17 181-198 239-255 (306)
76 3e5z_A Putative gluconolactona 43.9 1.4E+02 0.0049 25.0 10.5 13 131-143 119-131 (296)
77 4gga_A P55CDC, cell division c 42.9 1.8E+02 0.0062 25.9 24.5 139 20-199 118-260 (420)
78 1r5m_A SIR4-interacting protei 42.4 1.7E+02 0.0059 25.5 23.9 28 172-199 290-318 (425)
79 2pm9_A Protein WEB1, protein t 42.4 1.8E+02 0.006 25.6 25.2 30 63-92 113-145 (416)
80 3p6j_A De novo designed beta-t 42.4 1.1E+02 0.0039 23.3 10.7 108 64-196 30-139 (142)
81 4a11_B DNA excision repair pro 39.5 1.9E+02 0.0065 25.1 28.0 146 17-200 56-218 (408)
82 1wp5_A Topoisomerase IV; broke 38.6 2E+02 0.007 25.2 17.0 197 73-340 5-216 (323)
83 4asc_A Kelch repeat and BTB do 38.0 1.9E+02 0.0065 24.7 11.6 17 74-91 141-157 (315)
84 1sq9_A Antiviral protein SKI8; 34.8 2.3E+02 0.0077 24.6 23.8 166 13-199 22-215 (397)
85 1q7f_A NHL, brain tumor CG1071 32.1 2.1E+02 0.0073 23.5 17.3 16 130-145 210-225 (286)
86 1zi0_A DNA gyrase subunit A; b 30.8 2.6E+02 0.009 24.2 21.6 126 69-206 49-182 (307)
87 4g56_B MGC81050 protein; prote 30.8 2.7E+02 0.0091 24.2 24.7 108 64-198 182-299 (357)
88 4ery_A WD repeat-containing pr 30.6 2.4E+02 0.0082 23.6 24.5 109 64-199 108-222 (312)
89 1zvt_A Topoisomerase IV subuni 29.5 2.5E+02 0.0087 23.6 10.9 123 70-206 41-169 (256)
90 4gga_A P55CDC, cell division c 28.7 3.1E+02 0.011 24.3 25.3 69 64-145 190-259 (420)
91 3bws_A Protein LP49; two-domai 28.6 3E+02 0.01 24.2 16.3 26 65-90 171-198 (433)
92 2xn4_A Kelch-like protein 2; s 27.9 2.5E+02 0.0085 23.6 8.7 17 74-91 54-70 (302)
93 4gqb_B Methylosome protein 50; 27.4 3.1E+02 0.01 23.8 25.3 139 18-198 94-244 (344)
94 2xyi_A Probable histone-bindin 26.8 3.4E+02 0.012 24.2 24.0 148 19-200 196-353 (430)
95 1zvt_A Topoisomerase IV subuni 26.6 2.9E+02 0.0098 23.2 15.8 75 123-201 39-115 (256)
96 2woz_A Kelch repeat and BTB do 26.3 22 0.00074 31.0 1.3 17 130-146 49-65 (318)
97 3q7x_A De novo designed beta-t 26.2 2.1E+02 0.0071 21.4 10.3 107 66-196 8-114 (132)
98 3gre_A Serine/threonine-protei 26.1 3.4E+02 0.012 24.0 15.6 252 17-345 123-436 (437)
99 2uvk_A YJHT; unknown function, 24.9 1.3E+02 0.0046 26.2 6.4 17 181-198 110-126 (357)
100 1q1u_A FGF-12, fibrobast growt 24.3 1.8E+02 0.0063 22.2 6.1 70 60-143 6-76 (144)
101 3lrv_A PRE-mRNA-splicing facto 23.3 3.5E+02 0.012 23.1 15.5 22 15-36 46-67 (343)
102 4aow_A Guanine nucleotide-bind 23.3 3.3E+02 0.011 22.7 23.1 28 172-199 216-245 (340)
103 1zvu_A Topoisomerase IV subuni 23.1 5.6E+02 0.019 25.4 12.2 120 73-206 514-639 (716)
104 3no0_A DNA gyrase subunit A; D 22.6 3.6E+02 0.012 22.9 20.7 164 15-205 33-201 (276)
105 1suu_A DNA gyrase subunit A; t 21.3 4E+02 0.014 23.0 23.7 173 13-207 54-238 (312)
106 3no2_A Uncharacterized protein 21.3 3.6E+02 0.012 22.5 19.4 24 274-298 244-267 (276)
107 1k8k_C P40, ARP2/3 complex 41 21.2 3.8E+02 0.013 22.7 24.7 115 63-199 52-172 (372)
108 3pbp_A Nucleoporin NUP82; beta 20.8 3.1E+02 0.011 25.4 7.9 64 11-89 133-209 (452)
No 1
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=100.00 E-value=4.3e-62 Score=465.73 Aligned_cols=301 Identities=30% Similarity=0.520 Sum_probs=269.0
Q ss_pred hcceeeeeeEEEEeeCCC-cEEEEeCCCCCccCCCCCCCCCCCCccceeecCCCCC-CeEEEecCCCceEEEecCCcEEE
Q 042844 10 NHVNVLTSRIFMRSASGT-AVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPS-DVTSVSAGHYHSLAVTNNGAVWA 87 (372)
Q Consensus 10 ~~~~~~~~~~~~~l~~~g-~vy~wG~n~~gqLG~~~~~~~~~~~~~~p~~i~~~~~-~i~~I~~G~~h~~~lt~~G~v~~ 87 (372)
+-.+++|..|+++++.++ +||+||.|.+||||.+. ..+...|.+++.+.. +|++|+||..|+++|+++|+||+
T Consensus 70 i~~va~G~~ht~al~~~gg~v~~wG~n~~GqLG~g~-----~~~~~~p~~v~~l~~~~i~~ia~G~~h~~alt~~G~v~~ 144 (406)
T 4d9s_A 70 IVSVTCGADHTVAYSQSGMEVYSWGWGDFGRLGHGN-----SSDLFTPLPIKALHGIRIKQIACGDSHCLAVTMEGEVQS 144 (406)
T ss_dssp EEEEEECSSEEEEEETTTTEEEEEECCGGGTTCSSS-----CCCEEEEEECGGGTTCCEEEEEECSSEEEEEETTSCEEE
T ss_pred EEEEEeCcceEEEEECCCCEEEEEcCCCCcCCCCCC-----CCccccceEecccCCCCEEEEEEChhheEEEcCCCcEEE
Confidence 345789999999999886 99999999999999987 346788988887654 79999999999999999999999
Q ss_pred EeCCCCCCCcCCCCCCCCccCCCceeecCCceeEEEEeecCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccccceEec
Q 042844 88 WGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVE 167 (372)
Q Consensus 88 ~G~n~~gqlg~~~~~~~~~~~~p~~i~~~~~~~i~~i~~g~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~p~~i~ 167 (372)
||.|.+||||.+... ....|.+++.+.+.+|++|+||.+|+++|+++|+||+||.|.+||||.+.. .....|.++.
T Consensus 145 wG~n~~GqLG~g~~~---~~~~p~~v~~~~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqlG~g~~-~~~~~p~~v~ 220 (406)
T 4d9s_A 145 WGRNQNGQLGLGDTE---DSLVPQKIQAFEGIRIKMVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDR-TDRLVPERVT 220 (406)
T ss_dssp EECCTTSTTCSSSCC---CEEEEEECGGGTTCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSS-CCEEEEEECC
T ss_pred eCCCCCccCCCCCCC---CcccceEecccCCCcEEEEecCCCeEEEEeCCCCEEEeeCCCCCCCCCCCC-CCcCccEEec
Confidence 999999999998876 345788888888889999999999999999999999999999999999865 5667899998
Q ss_pred ccCCCcEEEEEecCCeEEEEeCCCcEEEEeCCCCCCCCCCCCCCcCCCCCCCcCCCCCCccccchhhHHHhhhhhhcccc
Q 042844 168 ALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGME 247 (372)
Q Consensus 168 ~~~~~~i~~I~~g~~~~~~lt~~g~vy~wG~n~~gqlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (372)
.+...+|++|+||.+|+++|+++|+||+||.|.++|||.....
T Consensus 221 ~~~~~~i~~va~G~~ht~~l~~~G~v~~wG~n~~GqlG~g~~~------------------------------------- 263 (406)
T 4d9s_A 221 STGGEKMSMVACGWRHTISVSYSGALYTYGWSKYGQLGHGDLE------------------------------------- 263 (406)
T ss_dssp CSTTCCEEEEEECSSEEEEEETTCCEEEEECCTTSTTCSSSCC-------------------------------------
T ss_pred ccCCceEEEEEECCCcEEEEcCCCCEEEeeCCCCCCCCCCCCc-------------------------------------
Confidence 8888899999999999999999999999999999999987321
Q ss_pred cccCCCceeceeeec---CccEEEEEecCCeeEEEecCCCEEEEeCCCCCccCCCCCCCcccceeec----cccEEEecC
Q 042844 248 KEKYMPIIWEPFLVE---GVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDIN----FHPVSISSG 320 (372)
Q Consensus 248 ~~~~~~~~~~p~~i~---~~~i~~I~~G~~h~~alt~~G~vy~wG~n~~gqlG~~~~~~~~~P~~v~----~~i~~ia~G 320 (372)
....|.+++ ..+|++|+||..|++||+++|+||+||.|.+||||.++......|+++. .+|++|+||
T Consensus 264 ------~~~~p~~v~~~~~~~v~~i~~G~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~va~G 337 (406)
T 4d9s_A 264 ------DHLIPHKLEALSNSFISQISGGWRHTMALTSDGKLYGWGWNKFGQVGVGNNLDQCSPVQVRFPDDQKVVQVSCG 337 (406)
T ss_dssp ------CEEEEEECGGGTTSCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSSSCEEEEEEECCGGGCCEEEEEEC
T ss_pred ------CccccEEecccCCCCEEEEEecCCEEEEEcCCCeEEEeeCCCCCCCCCCCCCCCccCEEEeccCCCcEEEEEeC
Confidence 123466665 5679999999999999999999999999999999999988888888875 679999999
Q ss_pred CCceEEEEeeccccccCCCccEEEecCCCCCCccCCC--CCCCceEEecCCCC
Q 042844 321 LGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMG--PDNVPLVVEGLEGE 371 (372)
Q Consensus 321 ~~~s~~l~~~~~~~~~~~~g~v~~wG~n~~gqLG~~~--~~~~p~~i~~~~~~ 371 (372)
.+|+++|++ +|+||+||+|.+||||+++ +..+|++|+.|+.+
T Consensus 338 ~~hs~alt~---------~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~ 381 (406)
T 4d9s_A 338 WRHTLAVTE---------RNNVFAWGRGTNGQLGIGESVDRNFPKIIEALSVD 381 (406)
T ss_dssp SSEEEEEET---------TSCEEEEECCTTSTTCSSSCCCEEEEEECGGGCSC
T ss_pred CCeEEEEeC---------CCCEEEecCCCCCccCCCCCCCCcCCEEeeeecCC
Confidence 999999999 9999999999999999999 66789999987654
No 2
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=100.00 E-value=1.3e-61 Score=460.01 Aligned_cols=299 Identities=26% Similarity=0.514 Sum_probs=267.0
Q ss_pred ceeeeeeEEEEeeCCCcEEEEeCCCCCccCCCCCCCCCCCCccceeecCCCCC---CeEEEecCCCceEEEecCCcEEEE
Q 042844 12 VNVLTSRIFMRSASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPS---DVTSVSAGHYHSLAVTNNGAVWAW 88 (372)
Q Consensus 12 ~~~~~~~~~~~l~~~g~vy~wG~n~~gqLG~~~~~~~~~~~~~~p~~i~~~~~---~i~~I~~G~~h~~~lt~~G~v~~~ 88 (372)
.+++|..|+++++++|+||+||.|.+||||.+. ......|.+++.+.. ++++|+||..|++||+++|+||+|
T Consensus 57 ~i~~G~~~~~~l~~~G~v~~wG~n~~GqLG~g~-----~~~~~~p~~v~~~~~~~~~~v~i~~G~~h~~al~~~G~v~~w 131 (389)
T 3kci_A 57 QLIGGEQTLFAVTADGKLYATGYGAGGRLGIGG-----TESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSW 131 (389)
T ss_dssp EEEEETTEEEEEETTSCEEEEECCGGGTTSSSS-----SCCEEEEEECGGGTTSCEEEEEECTTCSEEEEEETTSCEEEE
T ss_pred EEEeCCCeEEEEcCCCcEEEEECCCCCCCCCCC-----cCCccCCEEcccccCCceeEEEECcCCCeEEEEcCCCCEEEE
Confidence 478999999999999999999999999999987 346788888876543 468999999999999999999999
Q ss_pred eCCCCCCCcCCCCCCCCccCCCceeecCCceeEEEEeecCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccccceEecc
Q 042844 89 GRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEA 168 (372)
Q Consensus 89 G~n~~gqlg~~~~~~~~~~~~p~~i~~~~~~~i~~i~~g~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~p~~i~~ 168 (372)
|.|.+||||.+... ....|.+++.+.+.+|++|+||..|+++|+++|+||+||.|.+||||.+.. .....|.+++.
T Consensus 132 G~n~~GqLG~g~~~---~~~~p~~v~~l~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~-~~~~~p~~v~~ 207 (389)
T 3kci_A 132 GEAEDGKLGHGNRS---PCDRPRVIESLRGIEVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGHSDS-EDQLKPKLVEA 207 (389)
T ss_dssp ECCGGGTTCSSSCC---CEEEEEECGGGTTSCEEEEEECSSEEEEEETTSCEEEEECCGGGTTCSSSC-CCEEEEEECGG
T ss_pred eCCCCCcCCCCCCc---cCcCCeEecccCCCeEEEEEeCcCeEEEEeCCCeEEEeCCCCCCCcCCCCC-cccccceEecc
Confidence 99999999998765 346788888888889999999999999999999999999999999999866 56678999998
Q ss_pred cCCCcEEEEEecC--CeEEEEeCCCcEEEEeCCCCCCCCCCCCCCcCCCCCCCcCCCCCCccccchhhHHHhhhhhhccc
Q 042844 169 LAGEKIVKVSFGW--GHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGM 246 (372)
Q Consensus 169 ~~~~~i~~I~~g~--~~~~~lt~~g~vy~wG~n~~gqlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (372)
+.+.+|++|+||. .|+++|+++|+||+||.|.++|||.....
T Consensus 208 ~~~~~v~~ia~G~g~~~t~~l~~~G~v~~wG~n~~GqLG~g~~~------------------------------------ 251 (389)
T 3kci_A 208 LQGHRVVDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSD------------------------------------ 251 (389)
T ss_dssp GTTSCEEEEEECCSSCEEEEEETTTEEEEEECCGGGTTSSSSCC------------------------------------
T ss_pred cCCCeEEEEEEcCCCcEEEEEccCCEEEEEeCCCCCCCCCCCCC------------------------------------
Confidence 8888999999994 89999999999999999999999987321
Q ss_pred ccccCCCceeceeeec---CccEEEEEecCCeeEEEecCCCEEEEeCCCCCccCCCCCCCcccceeec----cccEEEec
Q 042844 247 EKEKYMPIIWEPFLVE---GVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDIN----FHPVSISS 319 (372)
Q Consensus 247 ~~~~~~~~~~~p~~i~---~~~i~~I~~G~~h~~alt~~G~vy~wG~n~~gqlG~~~~~~~~~P~~v~----~~i~~ia~ 319 (372)
....|.+++ ..+|++|+||..|++||+++|+||+||.|.++|||.+.......|+++. .+|++|+|
T Consensus 252 -------~~~~p~~v~~~~~~~v~~v~~G~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~v~~ia~ 324 (389)
T 3kci_A 252 -------GCKVPMKIDSLTGLGVVKVECGSQFSVALTKSGAVYTWGKGDYHRLGHGSDDHVRRPRQVQGLQGKKVIAIAT 324 (389)
T ss_dssp -------CEEEEEECGGGTTSCEEEEEEETTEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEE
T ss_pred -------CccccEEecccCCCcEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCCCccccCCeEeccCCCCCEEEEEe
Confidence 122466665 4579999999999999999999999999999999999988888899886 57999999
Q ss_pred CCCceEEEEeeccccccCCCccEEEecCCCCCCccCCC--CCCCceEEecCCCC
Q 042844 320 GLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMG--PDNVPLVVEGLEGE 371 (372)
Q Consensus 320 G~~~s~~l~~~~~~~~~~~~g~v~~wG~n~~gqLG~~~--~~~~p~~i~~~~~~ 371 (372)
|.+|++++++ +|+||+||+|.+||||++. +...|++|+.+++.
T Consensus 325 G~~h~~al~~---------~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~~~~~~ 369 (389)
T 3kci_A 325 GSLHCVCCTE---------DGEVYTWGDNDEGQLGDGTTNAIQRPRLVAALQGK 369 (389)
T ss_dssp CSSEEEEEET---------TCCEEEEECCTTSTTCSSSCCCEEEEEECGGGTTS
T ss_pred ccCeEEEECC---------CCCEEEeeCCCCCcCCCCCCCCccCcEEecccCCC
Confidence 9999999999 9999999999999999998 55679999888764
No 3
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=100.00 E-value=8.5e-61 Score=456.75 Aligned_cols=296 Identities=29% Similarity=0.533 Sum_probs=264.4
Q ss_pred ceeeeeeEEEEeeCCCcEEEEeCCCCCccCCCCCCCCCCCCccceeecCCCCC-CeEEEecCCCceEEEecCC-cEEEEe
Q 042844 12 VNVLTSRIFMRSASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPS-DVTSVSAGHYHSLAVTNNG-AVWAWG 89 (372)
Q Consensus 12 ~~~~~~~~~~~l~~~g~vy~wG~n~~gqLG~~~~~~~~~~~~~~p~~i~~~~~-~i~~I~~G~~h~~~lt~~G-~v~~~G 89 (372)
.+++|..|+++++++|+||+||.|.+||||.+. ..+...|.+++.+.. +|++|+||..|+++|+++| +||+||
T Consensus 20 ~ia~G~~hs~al~~~g~v~~wG~n~~GqLG~g~-----~~~~~~P~~v~~l~~~~i~~va~G~~ht~al~~~gg~v~~wG 94 (406)
T 4d9s_A 20 IISAGASHSVALLSGDIVCSWGRGEDGQLGHGD-----AEDRPSPTQLSALDGHQIVSVTCGADHTVAYSQSGMEVYSWG 94 (406)
T ss_dssp EEEECSSEEEEEETTTEEEEEECCTTSTTCSSS-----CCCEEEEEECGGGTTSCEEEEEECSSEEEEEETTTTEEEEEE
T ss_pred EEecCCCeEEEEEeCCEEEEEeCCCCCCCCCCC-----cccCcCCEEecccCCCCEEEEEeCcceEEEEECCCCEEEEEc
Confidence 478999999999999999999999999999988 346788999887653 7999999999999999986 999999
Q ss_pred CCCCCCCcCCCCCCCCccCCCceeecCCceeEEEEeecCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccccceEeccc
Q 042844 90 RNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEAL 169 (372)
Q Consensus 90 ~n~~gqlg~~~~~~~~~~~~p~~i~~~~~~~i~~i~~g~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~p~~i~~~ 169 (372)
.|.+||||.+... ....|.+++.+...+|++|+||..|+++|+++|+||+||.|.+||||.+.. .....|.++..+
T Consensus 95 ~n~~GqLG~g~~~---~~~~p~~v~~l~~~~i~~ia~G~~h~~alt~~G~v~~wG~n~~GqLG~g~~-~~~~~p~~v~~~ 170 (406)
T 4d9s_A 95 WGDFGRLGHGNSS---DLFTPLPIKALHGIRIKQIACGDSHCLAVTMEGEVQSWGRNQNGQLGLGDT-EDSLVPQKIQAF 170 (406)
T ss_dssp CCGGGTTCSSSCC---CEEEEEECGGGTTCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSC-CCEEEEEECGGG
T ss_pred CCCCcCCCCCCCC---ccccceEecccCCCCEEEEEEChhheEEEcCCCcEEEeCCCCCccCCCCCC-CCcccceEeccc
Confidence 9999999998765 346788888888889999999999999999999999999999999999865 556789999988
Q ss_pred CCCcEEEEEecCCeEEEEeCCCcEEEEeCCCCCCCCCCCCCCcCCCCCCCcCCCCCCccccchhhHHHhhhhhhcccccc
Q 042844 170 AGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKE 249 (372)
Q Consensus 170 ~~~~i~~I~~g~~~~~~lt~~g~vy~wG~n~~gqlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (372)
.+.+|++|+||.+|++||+++|+||+||.|.++|||......
T Consensus 171 ~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqlG~g~~~~-------------------------------------- 212 (406)
T 4d9s_A 171 EGIRIKMVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTD-------------------------------------- 212 (406)
T ss_dssp TTCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSSCC--------------------------------------
T ss_pred CCCcEEEEecCCCeEEEEeCCCCEEEeeCCCCCCCCCCCCCC--------------------------------------
Confidence 888999999999999999999999999999999999873211
Q ss_pred cCCCceeceeeec---CccEEEEEecCCeeEEEecCCCEEEEeCCCCCccCCCCCCCcccceeec----cccEEEecCCC
Q 042844 250 KYMPIIWEPFLVE---GVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDIN----FHPVSISSGLG 322 (372)
Q Consensus 250 ~~~~~~~~p~~i~---~~~i~~I~~G~~h~~alt~~G~vy~wG~n~~gqlG~~~~~~~~~P~~v~----~~i~~ia~G~~ 322 (372)
...|.++. ..+|++|+||.+|+++|+++|+||+||.|.+||||.++......|.++. .+|++|+||.+
T Consensus 213 -----~~~p~~v~~~~~~~i~~va~G~~ht~~l~~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~v~~i~~G~~ 287 (406)
T 4d9s_A 213 -----RLVPERVTSTGGEKMSMVACGWRHTISVSYSGALYTYGWSKYGQLGHGDLEDHLIPHKLEALSNSFISQISGGWR 287 (406)
T ss_dssp -----EEEEEECCCSTTCCEEEEEECSSEEEEEETTCCEEEEECCTTSTTCSSSCCCEEEEEECGGGTTSCEEEEEECSS
T ss_pred -----cCccEEecccCCceEEEEEECCCcEEEEcCCCCEEEeeCCCCCCCCCCCCcCccccEEecccCCCCEEEEEecCC
Confidence 12455554 5789999999999999999999999999999999999988888898886 46999999999
Q ss_pred ceEEEEeeccccccCCCccEEEecCCCCCCccCCC--CCCCceEEecC
Q 042844 323 HSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMG--PDNVPLVVEGL 368 (372)
Q Consensus 323 ~s~~l~~~~~~~~~~~~g~v~~wG~n~~gqLG~~~--~~~~p~~i~~~ 368 (372)
|+++|++ +|+||+||+|.+||||++. +...|++|+-.
T Consensus 288 hs~alt~---------~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~ 326 (406)
T 4d9s_A 288 HTMALTS---------DGKLYGWGWNKFGQVGVGNNLDQCSPVQVRFP 326 (406)
T ss_dssp EEEEEET---------TSCEEEEECCTTSTTCSSSSSCEEEEEEECCG
T ss_pred EEEEEcC---------CCeEEEeeCCCCCCCCCCCCCCCccCEEEecc
Confidence 9999999 9999999999999999998 45567777643
No 4
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster}
Probab=100.00 E-value=4.5e-59 Score=447.72 Aligned_cols=301 Identities=21% Similarity=0.268 Sum_probs=260.2
Q ss_pred hhhcceeeeeeEEEEeeCCCcEEEEeCCCCCccCCCCCCCCCCCCccceeecCCCCCCeEEEecCCCceEEEecCCcEEE
Q 042844 8 VHNHVNVLTSRIFMRSASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWA 87 (372)
Q Consensus 8 ~~~~~~~~~~~~~~~l~~~g~vy~wG~n~~gqLG~~~~~~~~~~~~~~p~~i~~~~~~i~~I~~G~~h~~~lt~~G~v~~ 87 (372)
..+..+++|..|+++++++|+||+||.|.+||||.+... ......|.+++ ++.+|++|+||..|+++|+++|+||+
T Consensus 75 ~~v~~va~G~~h~~~l~~~G~v~~wG~n~~GqLG~~~~~---~~~~~~P~~v~-~~~~i~~va~G~~hs~al~~~G~v~~ 150 (423)
T 3mvd_K 75 PDAVDISAGGMHNLVLTKSGDIYSFGCNDEGALGRDTSE---DGSESKPDLID-LPGKALCISAGDSHSACLLEDGRVFA 150 (423)
T ss_dssp SSEEEEEECSSEEEEEETTSCEEEEECCSSSTTCSCCCS---TTSSSSCEECC-CSSCEEEEEECSSEEEEEETTSCEEE
T ss_pred CCceEEeeCCCeEEEEeCCCeEEEeECCCCcCCCCCCcC---CccccCCeEEc-CCCCEEEEEcCcCeEEEEeCCCeEEE
Confidence 334568899999999999999999999999999998743 23467888887 55799999999999999999999999
Q ss_pred EeC--CCCCCCcCCCCCCCCccCCCceeecCCceeEEEEeecCcEEEEEeCCCcEEEEeCCCCCCCCCCCCC--------
Q 042844 88 WGR--NNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDI-------- 157 (372)
Q Consensus 88 ~G~--n~~gqlg~~~~~~~~~~~~p~~i~~~~~~~i~~i~~g~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~-------- 157 (372)
||. |.+||||.+... ..+++++.+...+|++|+||..|+++|+++|+||+||.|.+||||.+...
T Consensus 151 wG~~~n~~GqlG~~~~~-----~~~~p~~~~~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~ 225 (423)
T 3mvd_K 151 WGSFRDSHGNMGLTIDG-----NKRTPIDLMEGTVCCSIASGADHLVILTTAGKVFTVGCAEQGQLGRLSERSISGEGRR 225 (423)
T ss_dssp EECEECSSSEEESBTTB-----CEEEEEESSTTCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTSSCCTTTTTSCSTT
T ss_pred EeCCCCCCCCcCcCCCC-----CCceeeEecCCCcEEEEecCCCeEEEEecCCeEEEeeCCcCCccCCCccccccccccc
Confidence 999 999999998766 23445555677789999999999999999999999999999999997542
Q ss_pred --cccccceEecccCCCcEEEEEecCCeEEEE-eCCCcEEEEeCCCCCCCCCCCCCCcCCCCCCCcCCCCCCccccchhh
Q 042844 158 --TEAIVPSRVEALAGEKIVKVSFGWGHALAQ-TEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSST 234 (372)
Q Consensus 158 --~~~~~p~~i~~~~~~~i~~I~~g~~~~~~l-t~~g~vy~wG~n~~gqlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (372)
.....|.++......+|++|+||.+|++++ +++|+||+||.|.++|||....
T Consensus 226 ~~~~~~~p~~v~~~~~~~v~~i~~g~~~~~~~~~~~g~v~~wG~n~~gqlg~~~~------------------------- 280 (423)
T 3mvd_K 226 GKRDLLRPTQLIITRAKPFEAIWATNYCTFMRESQTQVIWATGLNNFKQLAHETK------------------------- 280 (423)
T ss_dssp TTTTTSSCEEECCTTCCCEEEEEEETTEEEEEETTTCCEEEEEECTTCTTSSCCT-------------------------
T ss_pred ccccccCCeEEeecCCccEEEEEECCcEEEEEECCCCeEEEEeCCCCCcCCCCCC-------------------------
Confidence 345688888877778899999999999999 6999999999999999998522
Q ss_pred HHHhhhhhhcccccccCCCceeceeeecCccEEEEEecCCeeEEEecCCCEEEEeCCCCCccCCCCCCC-cccceeec--
Q 042844 235 IEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDM-GMFPVDIN-- 311 (372)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~i~~I~~G~~h~~alt~~G~vy~wG~n~~gqlG~~~~~~-~~~P~~v~-- 311 (372)
.......|.++...+|++|+||..|++||+++|+||+||.|.+||||.++... ...|.++.
T Consensus 281 ----------------~~~~~~~p~~~~~~~v~~ia~G~~ht~alt~~G~v~~wG~n~~GqLG~g~~~~~~~~p~~v~~l 344 (423)
T 3mvd_K 281 ----------------GKEFALTPIKTELKDIRHIAGGQHHTVILTTDLKCSVVGRPEYGRLGLGDVKDVVEKPTIVKKL 344 (423)
T ss_dssp ----------------TCSEEEEEEEECCCSEEEEEECSSEEEEEETTCCEEEEECCGGGTTCSSSCCSCEEEEEECTTC
T ss_pred ----------------CCceeeeeEEcCCCCeEEEEcccCeEEEEeCCCcEEEEECCCCCCCCCCCccccccCceEeccC
Confidence 11123456666678899999999999999999999999999999999998665 34677765
Q ss_pred -cccEEEecCCCceEEEEeeccccccCCCccEEEecCCCCCCccCCC--CCCCceEEec
Q 042844 312 -FHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMG--PDNVPLVVEG 367 (372)
Q Consensus 312 -~~i~~ia~G~~~s~~l~~~~~~~~~~~~g~v~~wG~n~~gqLG~~~--~~~~p~~i~~ 367 (372)
.+|++|+||.+|+++|++ +|+||+||+|.+||||+++ +..+|++|+.
T Consensus 345 ~~~v~~ia~G~~hs~alt~---------~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~~ 394 (423)
T 3mvd_K 345 TEKIVSVGCGEVCSYAVTI---------DGKLYSWGSGVNNQLGVGDGDDELEPIVVVS 394 (423)
T ss_dssp CSCEEEEEEETTEEEEEET---------TSCEEEEECCTTSCSSSSSSCCEEEEEECCS
T ss_pred CCCEEEEEcCCCeEEEEcC---------CCCEEEECCCCCCCCCCCCCCCcccCeEEeC
Confidence 379999999999999999 9999999999999999998 5667888875
No 5
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B
Probab=100.00 E-value=4.2e-59 Score=446.43 Aligned_cols=299 Identities=25% Similarity=0.348 Sum_probs=253.1
Q ss_pred hhcceeeeeeEEEEeeCCCcEEEEeCCCCCccCCCCCCCCCCCCccceeecCCCCCCeEEEecCCCceEEEecCCcEEEE
Q 042844 9 HNHVNVLTSRIFMRSASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAW 88 (372)
Q Consensus 9 ~~~~~~~~~~~~~~l~~~g~vy~wG~n~~gqLG~~~~~~~~~~~~~~p~~i~~~~~~i~~I~~G~~h~~~lt~~G~v~~~ 88 (372)
.+-.+++|..|+++++++|+||+||.|.+||||.+... ......|.+++ ++.+|++|+||..|+++|+++|+||+|
T Consensus 60 ~i~~va~G~~hs~~l~~~G~v~~wG~n~~GqLG~~~~~---~~~~~~P~~v~-l~~~i~~va~G~~hs~alt~~G~v~~w 135 (413)
T 1a12_A 60 DVVQAEAGGMHTVCLSKSGQVYSFGCNDEGALGRDTSV---EGSEMVPGKVE-LQEKVVQVSAGDSHTAALTDDGRVFLW 135 (413)
T ss_dssp CEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSCCCS---TTGGGSCEECC-CCSCEEEEEECSSEEEEEETTSCEEEE
T ss_pred CeEEEEeCCCeEEEEcCCCCEEEEECCCCCCCCCCCCC---CccccCCeEec-CCCcEEEEecCCCeEEEEcCCCcEEEe
Confidence 34457899999999999999999999999999998742 23567888885 667999999999999999999999999
Q ss_pred eC--CCCCCCcCCCCCCCCccCCCceeecCCceeEEEEeecCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCc--------
Q 042844 89 GR--NNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDIT-------- 158 (372)
Q Consensus 89 G~--n~~gqlg~~~~~~~~~~~~p~~i~~~~~~~i~~i~~g~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~-------- 158 (372)
|. |.+||||.+.... ....|.++ +...+|++|+||..|+++|+++|+||+||.|.+||||.+....
T Consensus 136 G~~~n~~GqlG~~~~~~--~~~~P~~v--~~~~~i~~ia~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~ 211 (413)
T 1a12_A 136 GSFRDNNGVIGLLEPMK--KSMVPVQV--QLDVPVVKVASGNDHLVMLTADGDLYTLGCGEQGQLGRVPELFANRGGRQG 211 (413)
T ss_dssp ECEEETTEEEESSBBTB--CEEEEEEE--CCSSCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSCGGGTSSSCGGGG
T ss_pred eCCcCCCCccCcCCccc--cccCCEEe--cCCCCEEEEEecCceEEEEcCCCCEEEeeCCCCCccCCCcccccccccccc
Confidence 99 9999999876542 22346655 4456899999999999999999999999999999999874321
Q ss_pred --ccccceEeccc-----CCCcEEEEEecCCeEEEEeCCCcEEEEeCCCCCCCCCCCCCCcCCCCCCCcCCCCCCccccc
Q 042844 159 --EAIVPSRVEAL-----AGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEIS 231 (372)
Q Consensus 159 --~~~~p~~i~~~-----~~~~i~~I~~g~~~~~~lt~~g~vy~wG~n~~gqlg~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (372)
....|.++... ...+|++|+||.+|++||+++|+||+||.|.++|||.....
T Consensus 212 ~~~~~~P~~v~~~~~g~~~~~~i~~ia~G~~hs~alt~~G~v~~wG~n~~gqLG~~~~~--------------------- 270 (413)
T 1a12_A 212 LERLLVPKCVMLKSRGSRGHVRFQDAFCGAYFTFAISHEGHVYGFGLSNYHQLGTPGTE--------------------- 270 (413)
T ss_dssp HHHHHSCEECCCBCSSCCSBCCEEEEEEETTEEEEEETTCCEEEEECCTTSTTSCSSCS---------------------
T ss_pred ccccccCceEeeccccccCCccEEEEEeCCCEEEEEeCCCCEEEEeCCCCcCCCCCCCC---------------------
Confidence 23567666543 34689999999999999999999999999999999987321
Q ss_pred hhhHHHhhhhhhcccccccCCCceeceeeec---C--ccEEEEEecCCeeEEEecCCCEEEEeCCCCCccCCC-CCCCcc
Q 042844 232 SSTIEKAQKLVSEGMEKEKYMPIIWEPFLVE---G--VEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGRE-KQDMGM 305 (372)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~---~--~~i~~I~~G~~h~~alt~~G~vy~wG~n~~gqlG~~-~~~~~~ 305 (372)
..+.|.+++ . .+|++|+||..|++||+++|+||+||.|.+||||.+ +.....
T Consensus 271 ----------------------~~~~P~~v~~l~~~~~~v~~ia~G~~hs~al~~~G~v~~wG~n~~GqLG~g~~~~~~~ 328 (413)
T 1a12_A 271 ----------------------SCFIPQNLTSFKNSTKSWVGFSGGQHHTVCMDSEGKAYSLGRAEYGRLGLGEGAEEKS 328 (413)
T ss_dssp ----------------------CEEEEEECGGGCCTTCCEEEEEECSSEEEEEETTSCEEEEECCGGGTTCSCTTCCCEE
T ss_pred ----------------------cccccEEchhccCCCceEEEEecccceEEEEeCCCCEEEeeCCCCCccCCCCCCcccc
Confidence 123566665 2 469999999999999999999999999999999998 556667
Q ss_pred cceeec--cccEEEecCCCceEEEEeeccccccCCCccEEEecCCCCCCccCCC--CCCCceEEec
Q 042844 306 FPVDIN--FHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMG--PDNVPLVVEG 367 (372)
Q Consensus 306 ~P~~v~--~~i~~ia~G~~~s~~l~~~~~~~~~~~~g~v~~wG~n~~gqLG~~~--~~~~p~~i~~ 367 (372)
.|++++ .+|++|+||.+|++++++ +|+||+||+|.+||||++. +..+|++|+.
T Consensus 329 ~P~~v~~l~~v~~v~~G~~hs~alt~---------~G~v~~wG~n~~gqLG~g~~~~~~~P~~v~~ 385 (413)
T 1a12_A 329 IPTLISRLPAVSSVACGASVGYAVTK---------DGRVFAWGMGTNYQLGTGQDEDAWSPVEMMG 385 (413)
T ss_dssp EEEECCSSSSEEEEEECSSEEEEEET---------TSCEEEEECCTTSTTCSSSCSCEEEEEECCS
T ss_pred CCEEecccCceeEEEECcceEEEEeC---------CCCEEEecCCCCCCCCCCCCCCcccCeEccc
Confidence 788876 589999999999999999 9999999999999999998 5566887764
No 6
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=100.00 E-value=9.4e-60 Score=447.23 Aligned_cols=300 Identities=29% Similarity=0.492 Sum_probs=248.1
Q ss_pred cceeeeeeEEEEeeCCCcEEEEeCCCCCccCCCCCCCCCCCCccceeecCCCC-CCeEEEecCCCceEEEecCCcEEEEe
Q 042844 11 HVNVLTSRIFMRSASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLP-SDVTSVSAGHYHSLAVTNNGAVWAWG 89 (372)
Q Consensus 11 ~~~~~~~~~~~~l~~~g~vy~wG~n~~gqLG~~~~~~~~~~~~~~p~~i~~~~-~~i~~I~~G~~h~~~lt~~G~v~~~G 89 (372)
|-+....+++++++.+|+||+||.|.+||||.+. ......|.+++.+. .+|++|+||..|+++|+++|+||+||
T Consensus 4 ~~~~~~~~~~~~l~~~G~v~~wG~n~~GqLG~~~-----~~~~~~p~~v~~~~~~~i~~i~~G~~~~~~l~~~G~v~~wG 78 (389)
T 3kci_A 4 HHHHSSGRENLYFQGSGTIYGWGHNHRGQLGGIE-----GAKVKVPTPCEALATLRPVQLIGGEQTLFAVTADGKLYATG 78 (389)
T ss_dssp -----------------CEEEEEECTTSTTSSCS-----CSEEEEEEECHHHHHTCEEEEEEETTEEEEEETTSCEEEEE
T ss_pred cccccCcccceeECCCCeEEEeeCCCCccCCCCc-----CccccCCEecccccCCceEEEEeCCCeEEEEcCCCcEEEEE
Confidence 4456688999999999999999999999999876 34677888876543 37999999999999999999999999
Q ss_pred CCCCCCCcCCCCCCCCccCCCceeecCCc--eeEEEEeecCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccccceEec
Q 042844 90 RNNEVQLGRGALESRATWNDPKRVEGLDQ--VNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVE 167 (372)
Q Consensus 90 ~n~~gqlg~~~~~~~~~~~~p~~i~~~~~--~~i~~i~~g~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~p~~i~ 167 (372)
.|.+||||.+... ....|.+++.+.. .++++|+||..|+++|+++|+||+||.|.+||||.+.. .....|.+++
T Consensus 79 ~n~~GqLG~g~~~---~~~~p~~v~~~~~~~~~~v~i~~G~~h~~al~~~G~v~~wG~n~~GqLG~g~~-~~~~~p~~v~ 154 (389)
T 3kci_A 79 YGAGGRLGIGGTE---SVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLGHGNR-SPCDRPRVIE 154 (389)
T ss_dssp CCGGGTTSSSSSC---CEEEEEECGGGTTSCEEEEEECTTCSEEEEEETTSCEEEEECCGGGTTCSSSC-CCEEEEEECG
T ss_pred CCCCCCCCCCCcC---CccCCEEcccccCCceeEEEECcCCCeEEEEcCCCCEEEEeCCCCCcCCCCCC-ccCcCCeEec
Confidence 9999999998765 3456777776655 45688999999999999999999999999999999865 5567899999
Q ss_pred ccCCCcEEEEEecCCeEEEEeCCCcEEEEeCCCCCCCCCCCCCCcCCCCCCCcCCCCCCccccchhhHHHhhhhhhcccc
Q 042844 168 ALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGME 247 (372)
Q Consensus 168 ~~~~~~i~~I~~g~~~~~~lt~~g~vy~wG~n~~gqlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (372)
.+.+.+|++|+||..|++||+++|+||+||.|.++|||.....
T Consensus 155 ~l~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~------------------------------------- 197 (389)
T 3kci_A 155 SLRGIEVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGHSDSE------------------------------------- 197 (389)
T ss_dssp GGTTSCEEEEEECSSEEEEEETTSCEEEEECCGGGTTCSSSCC-------------------------------------
T ss_pred ccCCCeEEEEEeCcCeEEEEeCCCeEEEeCCCCCCCcCCCCCc-------------------------------------
Confidence 8888899999999999999999999999999999999987321
Q ss_pred cccCCCceeceeeec---CccEEEEEecC--CeeEEEecCCCEEEEeCCCCCccCCCCCCCcccceeec----cccEEEe
Q 042844 248 KEKYMPIIWEPFLVE---GVEVVDIACGF--DHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDIN----FHPVSIS 318 (372)
Q Consensus 248 ~~~~~~~~~~p~~i~---~~~i~~I~~G~--~h~~alt~~G~vy~wG~n~~gqlG~~~~~~~~~P~~v~----~~i~~ia 318 (372)
....|.+++ ..+|++|+||. .|+++|+++|+||+||.|.+||||.+.......|+++. .+|++|+
T Consensus 198 ------~~~~p~~v~~~~~~~v~~ia~G~g~~~t~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~v~ 271 (389)
T 3kci_A 198 ------DQLKPKLVEALQGHRVVDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLTGLGVVKVE 271 (389)
T ss_dssp ------CEEEEEECGGGTTSCEEEEEECCSSCEEEEEETTTEEEEEECCGGGTTSSSSCCCEEEEEECGGGTTSCEEEEE
T ss_pred ------ccccceEecccCCCeEEEEEEcCCCcEEEEEccCCEEEEEeCCCCCCCCCCCCCCccccEEecccCCCcEEEEe
Confidence 123466665 67899999994 89999999999999999999999999988888898886 4699999
Q ss_pred cCCCceEEEEeeccccccCCCccEEEecCCCCCCccCCC--CCCCceEEecCCCC
Q 042844 319 SGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMG--PDNVPLVVEGLEGE 371 (372)
Q Consensus 319 ~G~~~s~~l~~~~~~~~~~~~g~v~~wG~n~~gqLG~~~--~~~~p~~i~~~~~~ 371 (372)
||.+|+++|++ +|+||+||.|.+||||++. ....|++|+.+.++
T Consensus 272 ~G~~hs~alt~---------~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~ 317 (389)
T 3kci_A 272 CGSQFSVALTK---------SGAVYTWGKGDYHRLGHGSDDHVRRPRQVQGLQGK 317 (389)
T ss_dssp EETTEEEEEET---------TSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTC
T ss_pred CCCCEEEEEeC---------CCeEEEEeCCCCCCCCCCCCccccCCeEeccCCCC
Confidence 99999999999 9999999999999999998 55568888877654
No 7
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.4e-58 Score=448.07 Aligned_cols=307 Identities=25% Similarity=0.351 Sum_probs=253.4
Q ss_pred hcceeeeeeEEEEeeCCCcEEEEeCCCCCccCCCCCCCCC------------------CCCccceeecCC--CC-----C
Q 042844 10 NHVNVLTSRIFMRSASGTAVVSFGDGSQGALGLPTSLTGV------------------GGDAYEPTRVPG--LP-----S 64 (372)
Q Consensus 10 ~~~~~~~~~~~~~l~~~g~vy~wG~n~~gqLG~~~~~~~~------------------~~~~~~p~~i~~--~~-----~ 64 (372)
+-.+++|..|+++++++|+||+||.|.+||||.+...... ......|.+++. ++ .
T Consensus 69 i~~va~G~~Ht~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~v~~~~l~~~~~~~ 148 (473)
T 3of7_A 69 IISFAVGGMHTLALDEESNVWSWGCNDVGALGRDTSNAKEQLKDMDADDSSDDEDGDLNELESTPAKIPRESFPPLAEGH 148 (473)
T ss_dssp EEEEEECSSEEEEEETTCCEEEEECCTTSTTCSCCC---------------------CCHHHHSCEECCGGGCHHHHTTC
T ss_pred EEEEEeCCCeEEEEecCCeEEEeECCCCCCCCCCCcccccccccccccccCccccccccccccCceecccccCCcccCCC
Confidence 3457899999999999999999999999999998743200 001567888875 54 5
Q ss_pred CeEEEecCCCceEEEecCCcEEEEeC--CCCCCCcCCCCCCCCccCCCceeecCCceeEEEEeecCcEEEEEeCCCcEEE
Q 042844 65 DVTSVSAGHYHSLAVTNNGAVWAWGR--NNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWV 142 (372)
Q Consensus 65 ~i~~I~~G~~h~~~lt~~G~v~~~G~--n~~gqlg~~~~~~~~~~~~p~~i~~~~~~~i~~i~~g~~~~~~lt~~g~v~~ 142 (372)
+|++|+||..|++||+++|+||+||. +.+||||.+... ......|.+++.+.+.+|++|+||..|+++|+++|+||+
T Consensus 149 ~i~~va~G~~hs~alt~~G~vy~wG~n~~~~GqLG~~~~~-~~~~~~P~~v~~l~~~~i~~va~G~~hs~alt~~G~v~~ 227 (473)
T 3of7_A 149 KVVQLAATDNMSCALFSNGEVYAWGTFRCNEGILGFYQDK-IKIQKTPWKVPTFSKYNIVQLAPGKDHILFLDEEGMVFA 227 (473)
T ss_dssp CEEEEEECSSEEEEEETTSCEEEEECEEETTEEEESBTTT-BSCEEEEEECCCCCSSCEEEEEECSSEEEEEETTSCEEE
T ss_pred cEEEEEccCCEEEEEeCCCeEEEeeCCcCCCCccCCCCCC-CccccCcEEccccCCCCEEEEEecCCeEEEEeCCCeEEE
Confidence 89999999999999999999999998 678999985543 223457888888888889999999999999999999999
Q ss_pred EeCCCCCCCCCCCCCc---ccccceEecccCCCcEEEEEecCCeEEEEeCCCcEEEEeCCCCCCCCCCCCCCcCCCCCCC
Q 042844 143 WGKSKRGQLGLGKDIT---EAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSN 219 (372)
Q Consensus 143 ~G~n~~gqlg~~~~~~---~~~~p~~i~~~~~~~i~~I~~g~~~~~~lt~~g~vy~wG~n~~gqlg~~~~~~~~~~~~~~ 219 (372)
||.|.+||||.+.... ....|.++.. .+|++|+||.+|++||+++|+||+||.|.++|||......
T Consensus 228 wG~n~~GqLG~~~~~~~~~~~~~p~~~~~---~~v~~Ia~G~~hs~alt~~G~v~~wG~n~~GqlG~~~~~~-------- 296 (473)
T 3of7_A 228 WGNGQQNQLGRKVMERFRLKTLDPRPFGL---RHVKYIASGENHCFALTKDNKLVSWGLNQFGQCGVSEDVE-------- 296 (473)
T ss_dssp EECCTTSTTSSCCCGGGTTTTCSCEECSC---CSEEEEEECSSEEEEEETTSCEEEEEECTTSTTCCCSCCC--------
T ss_pred EeCCCCCCCCCCccccccccccCceecCC---cceEEEecCCCeEEEEecCCCEEEeCCCCCCCcCCCCccc--------
Confidence 9999999999985432 2456666543 5799999999999999999999999999999999873210
Q ss_pred cCCCCCCccccchhhHHHhhhhhhcccccccCCCceeceeeec---CccEEEEEecCCeeEEEecCCCEEEEeCCCCCcc
Q 042844 220 IDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVE---GVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQL 296 (372)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~---~~~i~~I~~G~~h~~alt~~G~vy~wG~n~~gql 296 (372)
.......|+++. ..+|++|+||..|++||+++|+||+||.|.+|||
T Consensus 297 -------------------------------~~~~~~~P~~v~~~~~~~i~~ia~G~~hs~~lt~~G~v~~wG~n~~GqL 345 (473)
T 3of7_A 297 -------------------------------DGALVTKPKRLALPDNVVIRSIAAGEHHSLILSQDGDLYSCGRLDMFEV 345 (473)
T ss_dssp -------------------------------TTCEEEEEEECCCCTTCCEEEEEECSSEEEEEETTSCEEEEEECTTCTT
T ss_pred -------------------------------CCceeeccccccccCCccEEEEEeCCCeEEEEeCCCeEEEEECCCCCcc
Confidence 011234577666 4689999999999999999999999999999999
Q ss_pred CCCCCC--------------Ccccceeecc--ccEEEecCCCceEEEEeeccccccCCCccEEEecCCCCCCccCCC---
Q 042844 297 GREKQD--------------MGMFPVDINF--HPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMG--- 357 (372)
Q Consensus 297 G~~~~~--------------~~~~P~~v~~--~i~~ia~G~~~s~~l~~~~~~~~~~~~g~v~~wG~n~~gqLG~~~--- 357 (372)
|.+... ....|+++.. +|++|+||.+|+++|++ +|+||+||+|.+||||++.
T Consensus 346 G~~~~~~~~~~~~~~~~~~~~~~~P~~v~~~~~v~~Ia~G~~hs~al~~---------~G~vy~wG~n~~GqLG~g~~~~ 416 (473)
T 3of7_A 346 GIPKDNLPEYTYKDVHGKARAVPLPTKLNNVPKFKSVAAGSHHSVAVAQ---------NGIAYSWGFGETYAVGLGPFED 416 (473)
T ss_dssp CCCGGGCCTTCEECTTSCEEEEEEEEECCSSCCEEEEEECSSEEEEEET---------TSCEEEEECCTTCTTCCCSCCS
T ss_pred CCCccccccccccccCCceeeeccCcccCCCCceEEEEeCCCeEEEEeC---------CCcEEEeeCCCCCCCCCCCCCc
Confidence 986521 1235666653 89999999999999999 9999999999999999988
Q ss_pred CCCCceEEecC
Q 042844 358 PDNVPLVVEGL 368 (372)
Q Consensus 358 ~~~~p~~i~~~ 368 (372)
+..+|++|+.+
T Consensus 417 ~~~~P~~v~~~ 427 (473)
T 3of7_A 417 DTEVPTRIKNT 427 (473)
T ss_dssp CEEEEEECCCT
T ss_pred cccCCeEeccc
Confidence 45578888743
No 8
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B
Probab=100.00 E-value=3.9e-58 Score=439.68 Aligned_cols=306 Identities=25% Similarity=0.409 Sum_probs=253.1
Q ss_pred eeeeeeEEEEeeCCCcEEEEeCCCCCccCCCCCCCCCCCCccceeecCCCCCCeEEEecCCCceEEEecCCcEEEEeCCC
Q 042844 13 NVLTSRIFMRSASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNN 92 (372)
Q Consensus 13 ~~~~~~~~~~l~~~g~vy~wG~n~~gqLG~~~~~~~~~~~~~~p~~i~~~~~~i~~I~~G~~h~~~lt~~G~v~~~G~n~ 92 (372)
.+.+..|.++++.+|+||+||.|.+||||.+... .....|.+++. +.+|++|+||..|+++|+++|+||+||.|.
T Consensus 13 ~~~~~~h~~~l~~~g~v~~wG~n~~GqLG~g~~~----~~~~~P~~v~~-~~~i~~va~G~~hs~~l~~~G~v~~wG~n~ 87 (413)
T 1a12_A 13 KKVKVSHRSHSTEPGLVLTLGQGDVGQLGLGENV----MERKKPALVSI-PEDVVQAEAGGMHTVCLSKSGQVYSFGCND 87 (413)
T ss_dssp CCCCCCCTTCCCCCBEEEEEEECTTSTTCSCTTC----CEEEEEEEECC-SSCEEEEEECSSEEEEEETTSCEEEEECCT
T ss_pred hhhccccceeecCCCcEEEEECCCCCcCCCCCCc----cccccceEccC-CCCeEEEEeCCCeEEEEcCCCCEEEEECCC
Confidence 4566789999999999999999999999998832 23678998884 478999999999999999999999999999
Q ss_pred CCCCcCCCCCCCCccCCCceeecCCceeEEEEeecCcEEEEEeCCCcEEEEeC--CCCCCCCCCCCCcccccceEecccC
Q 042844 93 EVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGK--SKRGQLGLGKDITEAIVPSRVEALA 170 (372)
Q Consensus 93 ~gqlg~~~~~~~~~~~~p~~i~~~~~~~i~~i~~g~~~~~~lt~~g~v~~~G~--n~~gqlg~~~~~~~~~~p~~i~~~~ 170 (372)
+||||.+.... .....|.++.. . .+|++|+||..|+++|+++|+||+||. |.+||||.+........|.++ +.
T Consensus 88 ~GqLG~~~~~~-~~~~~P~~v~l-~-~~i~~va~G~~hs~alt~~G~v~~wG~~~n~~GqlG~~~~~~~~~~P~~v--~~ 162 (413)
T 1a12_A 88 EGALGRDTSVE-GSEMVPGKVEL-Q-EKVVQVSAGDSHTAALTDDGRVFLWGSFRDNNGVIGLLEPMKKSMVPVQV--QL 162 (413)
T ss_dssp TSTTCSCCCST-TGGGSCEECCC-C-SCEEEEEECSSEEEEEETTSCEEEEECEEETTEEEESSBBTBCEEEEEEE--CC
T ss_pred CCCCCCCCCCC-ccccCCeEecC-C-CcEEEEecCCCeEEEEcCCCcEEEeeCCcCCCCccCcCCccccccCCEEe--cC
Confidence 99999987642 23457877743 3 389999999999999999999999999 899999998765555568777 34
Q ss_pred CCcEEEEEecCCeEEEEeCCCcEEEEeCCCCCCCCCCCCCCcCCCCCCCcCCCCCCccccchhhHHHhhhhhhccccccc
Q 042844 171 GEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEK 250 (372)
Q Consensus 171 ~~~i~~I~~g~~~~~~lt~~g~vy~wG~n~~gqlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (372)
..+|++|+||.+|+++|+++|+||+||.|.++|||........... ....
T Consensus 163 ~~~i~~ia~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~---------------~~~~--------------- 212 (413)
T 1a12_A 163 DVPVVKVASGNDHLVMLTADGDLYTLGCGEQGQLGRVPELFANRGG---------------RQGL--------------- 212 (413)
T ss_dssp SSCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSCGGGTSSSCG---------------GGGH---------------
T ss_pred CCCEEEEEecCceEEEEcCCCCEEEeeCCCCCccCCCccccccccc---------------cccc---------------
Confidence 5689999999999999999999999999999999987332111000 0000
Q ss_pred CCCceeceeeec--------CccEEEEEecCCeeEEEecCCCEEEEeCCCCCccCCCCCCCcccceeec------cccEE
Q 042844 251 YMPIIWEPFLVE--------GVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDIN------FHPVS 316 (372)
Q Consensus 251 ~~~~~~~p~~i~--------~~~i~~I~~G~~h~~alt~~G~vy~wG~n~~gqlG~~~~~~~~~P~~v~------~~i~~ 316 (372)
.....|+.+. ..+|++|+||.+|++||+++|+||+||.|.+||||.++......|.++. .+|++
T Consensus 213 --~~~~~P~~v~~~~~g~~~~~~i~~ia~G~~hs~alt~~G~v~~wG~n~~gqLG~~~~~~~~~P~~v~~l~~~~~~v~~ 290 (413)
T 1a12_A 213 --ERLLVPKCVMLKSRGSRGHVRFQDAFCGAYFTFAISHEGHVYGFGLSNYHQLGTPGTESCFIPQNLTSFKNSTKSWVG 290 (413)
T ss_dssp --HHHHSCEECCCBCSSCCSBCCEEEEEEETTEEEEEETTCCEEEEECCTTSTTSCSSCSCEEEEEECGGGCCTTCCEEE
T ss_pred --cccccCceEeeccccccCCccEEEEEeCCCEEEEEeCCCCEEEEeCCCCcCCCCCCCCcccccEEchhccCCCceEEE
Confidence 0011233222 3679999999999999999999999999999999999988888898885 34999
Q ss_pred EecCCCceEEEEeeccccccCCCccEEEecCCCCCCccCCC---CCCCceEEecCC
Q 042844 317 ISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMG---PDNVPLVVEGLE 369 (372)
Q Consensus 317 ia~G~~~s~~l~~~~~~~~~~~~g~v~~wG~n~~gqLG~~~---~~~~p~~i~~~~ 369 (372)
|+||.+|+++|++ +|+||+||.|.+||||++. ....|++|+.++
T Consensus 291 ia~G~~hs~al~~---------~G~v~~wG~n~~GqLG~g~~~~~~~~P~~v~~l~ 337 (413)
T 1a12_A 291 FSGGQHHTVCMDS---------EGKAYSLGRAEYGRLGLGEGAEEKSIPTLISRLP 337 (413)
T ss_dssp EEECSSEEEEEET---------TSCEEEEECCGGGTTCSCTTCCCEEEEEECCSSS
T ss_pred EecccceEEEEeC---------CCCEEEeeCCCCCccCCCCCCccccCCEEecccC
Confidence 9999999999999 9999999999999999985 445788887654
No 9
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster}
Probab=100.00 E-value=1.1e-56 Score=431.25 Aligned_cols=309 Identities=22% Similarity=0.328 Sum_probs=252.7
Q ss_pred hcceeeeeeEEEEeeCCCcEEEEeCCCCCccCCCCCCCCCCCCccceeecCCCCCCeEEEecCCCceEEEecCCcEEEEe
Q 042844 10 NHVNVLTSRIFMRSASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWG 89 (372)
Q Consensus 10 ~~~~~~~~~~~~~l~~~g~vy~wG~n~~gqLG~~~~~~~~~~~~~~p~~i~~~~~~i~~I~~G~~h~~~lt~~G~v~~~G 89 (372)
...++++..|.++++++|+||+||.|.+||||.+... .....|.+++.+ .+|++|+||..|+++|+++|+||+||
T Consensus 26 ~~~ia~g~~~~~~l~~~G~v~~wG~n~~GqLG~g~~~----~~~~~p~~v~~l-~~v~~va~G~~h~~~l~~~G~v~~wG 100 (423)
T 3mvd_K 26 RARIAFHLELPKRRTVLGNVLVCGNGDVGQLGLGEDI----LERKRLSPVAGI-PDAVDISAGGMHNLVLTKSGDIYSFG 100 (423)
T ss_dssp ---CCCCCCCCCCCCCCEEEEEEEECTTSTTCSCSSC----CEEEEEEECCSC-SSEEEEEECSSEEEEEETTSCEEEEE
T ss_pred eeEEecCCccceeecCCCcEEEEeCCCCCCCCCCCCC----ccCcCCeEccCC-CCceEEeeCCCeEEEEeCCCeEEEeE
Confidence 3457899999999999999999999999999998732 356789999877 57999999999999999999999999
Q ss_pred CCCCCCCcCCCCCCCCccCCCceeecCCceeEEEEeecCcEEEEEeCCCcEEEEeC--CCCCCCCCCCCCcccccceEec
Q 042844 90 RNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGK--SKRGQLGLGKDITEAIVPSRVE 167 (372)
Q Consensus 90 ~n~~gqlg~~~~~~~~~~~~p~~i~~~~~~~i~~i~~g~~~~~~lt~~g~v~~~G~--n~~gqlg~~~~~~~~~~p~~i~ 167 (372)
.|.+||||.+.... .....|.++... .+|++|+||..|+++|+++|+||+||. |.+||||.+.. .....| +.
T Consensus 101 ~n~~GqLG~~~~~~-~~~~~P~~v~~~--~~i~~va~G~~hs~al~~~G~v~~wG~~~n~~GqlG~~~~-~~~~~p--~~ 174 (423)
T 3mvd_K 101 CNDEGALGRDTSED-GSESKPDLIDLP--GKALCISAGDSHSACLLEDGRVFAWGSFRDSHGNMGLTID-GNKRTP--ID 174 (423)
T ss_dssp CCSSSTTCSCCCST-TSSSSCEECCCS--SCEEEEEECSSEEEEEETTSCEEEEECEECSSSEEESBTT-BCEEEE--EE
T ss_pred CCCCcCCCCCCcCC-ccccCCeEEcCC--CCEEEEEcCcCeEEEEeCCCeEEEEeCCCCCCCCcCcCCC-CCCcee--eE
Confidence 99999999988752 234677777643 379999999999999999999999999 99999998755 333444 44
Q ss_pred ccCCCcEEEEEecCCeEEEEeCCCcEEEEeCCCCCCCCCCCCCCcCCCCCCCcCCCCCCccccchhhHHHhhhhhhcccc
Q 042844 168 ALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGME 247 (372)
Q Consensus 168 ~~~~~~i~~I~~g~~~~~~lt~~g~vy~wG~n~~gqlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (372)
.+...+|++|+||.+|++||+++|+||+||.|.++|||.........+..
T Consensus 175 ~~~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~------------------------------ 224 (423)
T 3mvd_K 175 LMEGTVCCSIASGADHLVILTTAGKVFTVGCAEQGQLGRLSERSISGEGR------------------------------ 224 (423)
T ss_dssp SSTTCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTSSCCTTTTTSCST------------------------------
T ss_pred ecCCCcEEEEecCCCeEEEEecCCeEEEeeCCcCCccCCCcccccccccc------------------------------
Confidence 45667899999999999999999999999999999999874422111100
Q ss_pred cccCCCceeceeeec---CccEEEEEecCCeeEEE-ecCCCEEEEeCCCCCccCCCCCCC--cccceeec-cccEEEecC
Q 042844 248 KEKYMPIIWEPFLVE---GVEVVDIACGFDHSLVL-GRNGVLLSCGSNVYGQLGREKQDM--GMFPVDIN-FHPVSISSG 320 (372)
Q Consensus 248 ~~~~~~~~~~p~~i~---~~~i~~I~~G~~h~~al-t~~G~vy~wG~n~~gqlG~~~~~~--~~~P~~v~-~~i~~ia~G 320 (372)
........|.++. ..+|++|+||.+|++++ +++|+||+||.|.++|||.+.... ...|+++. .+|++|+||
T Consensus 225 --~~~~~~~~p~~v~~~~~~~v~~i~~g~~~~~~~~~~~g~v~~wG~n~~gqlg~~~~~~~~~~~p~~~~~~~v~~ia~G 302 (423)
T 3mvd_K 225 --RGKRDLLRPTQLIITRAKPFEAIWATNYCTFMRESQTQVIWATGLNNFKQLAHETKGKEFALTPIKTELKDIRHIAGG 302 (423)
T ss_dssp --TTTTTTSSCEEECCTTCCCEEEEEEETTEEEEEETTTCCEEEEEECTTCTTSSCCTTCSEEEEEEEECCCSEEEEEEC
T ss_pred --cccccccCCeEEeecCCccEEEEEECCcEEEEEECCCCeEEEEeCCCCCcCCCCCCCCceeeeeEEcCCCCeEEEEcc
Confidence 0011123466555 67899999999999999 699999999999999999965433 34566554 689999999
Q ss_pred CCceEEEEeeccccccCCCccEEEecCCCCCCccCCCC---CCCceEEecCCC
Q 042844 321 LGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGP---DNVPLVVEGLEG 370 (372)
Q Consensus 321 ~~~s~~l~~~~~~~~~~~~g~v~~wG~n~~gqLG~~~~---~~~p~~i~~~~~ 370 (372)
.+|+++|++ +|+||+||+|.+||||.+.. ...|++|+.+.+
T Consensus 303 ~~ht~alt~---------~G~v~~wG~n~~GqLG~g~~~~~~~~p~~v~~l~~ 346 (423)
T 3mvd_K 303 QHHTVILTT---------DLKCSVVGRPEYGRLGLGDVKDVVEKPTIVKKLTE 346 (423)
T ss_dssp SSEEEEEET---------TCCEEEEECCGGGTTCSSSCCSCEEEEEECTTCCS
T ss_pred cCeEEEEeC---------CCcEEEEECCCCCCCCCCCccccccCceEeccCCC
Confidence 999999999 99999999999999999983 246888877654
No 10
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.3e-57 Score=440.09 Aligned_cols=293 Identities=25% Similarity=0.389 Sum_probs=245.9
Q ss_pred eeeeEEEEeeCCCcEEEEeCCCCCccCCCCCCCCCCCCccceeecCCCC---CCeEEEecCCCceEEEecCCcEEEEeCC
Q 042844 15 LTSRIFMRSASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLP---SDVTSVSAGHYHSLAVTNNGAVWAWGRN 91 (372)
Q Consensus 15 ~~~~~~~~l~~~g~vy~wG~n~~gqLG~~~~~~~~~~~~~~p~~i~~~~---~~i~~I~~G~~h~~~lt~~G~v~~~G~n 91 (372)
..-+|+++++.+++||+||.|.+||||.+.... ..+..+|.+++.+. .+|++|+||..|++||+++|+||+||.|
T Consensus 17 ~~~~h~~~~~~~g~v~~wG~n~~GqLG~G~~~~--~~~~~~P~~~~~~~~~~~~i~~va~G~~Ht~alt~~G~v~~wG~n 94 (473)
T 3of7_A 17 EDYKHMYLSVQPLDIFCWGTGSMCELGLGPLAK--NKEVKRPRLNPFLPRDEAKIISFAVGGMHTLALDEESNVWSWGCN 94 (473)
T ss_dssp GGGHHHHCCSSCCEEEEEEECTTSTTCSCSCGG--GGEEEEEEECTTSCTTTTCEEEEEECSSEEEEEETTCCEEEEECC
T ss_pred ccccccccCCCCccEEEEcCCCCCccCCCCCcc--cccccCcccccccccCCCCEEEEEeCCCeEEEEecCCeEEEeECC
Confidence 566788899999999999999999999997421 23467888887663 3799999999999999999999999999
Q ss_pred CCCCCcCCCCCCCC--------------------ccCCCceeec--C----CceeEEEEeecCcEEEEEeCCCcEEEEeC
Q 042844 92 NEVQLGRGALESRA--------------------TWNDPKRVEG--L----DQVNVCAAFASGVVSSAIGDDGSLWVWGK 145 (372)
Q Consensus 92 ~~gqlg~~~~~~~~--------------------~~~~p~~i~~--~----~~~~i~~i~~g~~~~~~lt~~g~v~~~G~ 145 (372)
.+||||.+...... ....|.+++. + +..+|++|+||..|+++|+++|+||+||.
T Consensus 95 ~~GqLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~v~~~~l~~~~~~~~i~~va~G~~hs~alt~~G~vy~wG~ 174 (473)
T 3of7_A 95 DVGALGRDTSNAKEQLKDMDADDSSDDEDGDLNELESTPAKIPRESFPPLAEGHKVVQLAATDNMSCALFSNGEVYAWGT 174 (473)
T ss_dssp TTSTTCSCCC---------------------CCHHHHSCEECCGGGCHHHHTTCCEEEEEECSSEEEEEETTSCEEEEEC
T ss_pred CCCCCCCCCcccccccccccccccCccccccccccccCceecccccCCcccCCCcEEEEEccCCEEEEEeCCCeEEEeeC
Confidence 99999998765310 1346777764 4 35789999999999999999999999998
Q ss_pred --CCCCCCCCCCC-CcccccceEecccCCCcEEEEEecCCeEEEEeCCCcEEEEeCCCCCCCCCCCCCCcCCCCCCCcCC
Q 042844 146 --SKRGQLGLGKD-ITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDR 222 (372)
Q Consensus 146 --n~~gqlg~~~~-~~~~~~p~~i~~~~~~~i~~I~~g~~~~~~lt~~g~vy~wG~n~~gqlg~~~~~~~~~~~~~~~~~ 222 (372)
+.+||||.+.. ......|.+++.+.+.+|++|+||.+|++||+++|+||+||.|.++|||........
T Consensus 175 n~~~~GqLG~~~~~~~~~~~P~~v~~l~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~--------- 245 (473)
T 3of7_A 175 FRCNEGILGFYQDKIKIQKTPWKVPTFSKYNIVQLAPGKDHILFLDEEGMVFAWGNGQQNQLGRKVMERFR--------- 245 (473)
T ss_dssp EEETTEEEESBTTTBSCEEEEEECCCCCSSCEEEEEECSSEEEEEETTSCEEEEECCTTSTTSSCCCGGGT---------
T ss_pred CcCCCCccCCCCCCCccccCcEEccccCCCCEEEEEecCCeEEEEeCCCeEEEEeCCCCCCCCCCcccccc---------
Confidence 67899998543 345678999988888889999999999999999999999999999999987321100
Q ss_pred CCCCccccchhhHHHhhhhhhcccccccCCCceeceeeecCccEEEEEecCCeeEEEecCCCEEEEeCCCCCccCCCCCC
Q 042844 223 SSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQD 302 (372)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~i~~I~~G~~h~~alt~~G~vy~wG~n~~gqlG~~~~~ 302 (372)
.....|..+...+|++|+||.+|++||+++|+||+||.|.+||||.+...
T Consensus 246 ------------------------------~~~~~p~~~~~~~v~~Ia~G~~hs~alt~~G~v~~wG~n~~GqlG~~~~~ 295 (473)
T 3of7_A 246 ------------------------------LKTLDPRPFGLRHVKYIASGENHCFALTKDNKLVSWGLNQFGQCGVSEDV 295 (473)
T ss_dssp ------------------------------TTTCSCEECSCCSEEEEEECSSEEEEEETTSCEEEEEECTTSTTCCCSCC
T ss_pred ------------------------------ccccCceecCCcceEEEecCCCeEEEEecCCCEEEeCCCCCCCcCCCCcc
Confidence 01124666666789999999999999999999999999999999998754
Q ss_pred ----Ccccceeec----cccEEEecCCCceEEEEeeccccccCCCccEEEecCCCCCCccCCC
Q 042844 303 ----MGMFPVDIN----FHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMG 357 (372)
Q Consensus 303 ----~~~~P~~v~----~~i~~ia~G~~~s~~l~~~~~~~~~~~~g~v~~wG~n~~gqLG~~~ 357 (372)
....|+++. .+|++|+||.+|+++|++ +|+||+||.|.+||||++.
T Consensus 296 ~~~~~~~~P~~v~~~~~~~i~~ia~G~~hs~~lt~---------~G~v~~wG~n~~GqLG~~~ 349 (473)
T 3of7_A 296 EDGALVTKPKRLALPDNVVIRSIAAGEHHSLILSQ---------DGDLYSCGRLDMFEVGIPK 349 (473)
T ss_dssp CTTCEEEEEEECCCCTTCCEEEEEECSSEEEEEET---------TSCEEEEEECTTCTTCCCG
T ss_pred cCCceeeccccccccCCccEEEEEeCCCeEEEEeC---------CCeEEEEECCCCCccCCCc
Confidence 234677765 579999999999999999 9999999999999999875
No 11
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=100.00 E-value=1e-48 Score=354.43 Aligned_cols=233 Identities=28% Similarity=0.380 Sum_probs=200.6
Q ss_pred hhhhhcceeeeeeEEEEeeCCCcEEEEeCCCCCccCCCCCCCCCCCCccceeecCCCCCCeEEEecCCCceEEEecCCcE
Q 042844 6 SVVHNHVNVLTSRIFMRSASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAV 85 (372)
Q Consensus 6 ~~~~~~~~~~~~~~~~~l~~~g~vy~wG~n~~gqLG~~~~~~~~~~~~~~p~~i~~~~~~i~~I~~G~~h~~~lt~~G~v 85 (372)
...++..+++|..|+++++ +|+||+||.|.+||||.+. +. ..+|++|+||..|+++|+ ||+|
T Consensus 22 ~~~~i~~ia~G~~h~~~l~-~G~v~~wG~n~~Gqlg~p~-------------~~---~~~i~~ia~G~~hs~~l~-~G~v 83 (282)
T 3qhy_B 22 AQSGVDAIAGGYFHGLALK-GGKVLGWGANLNGQLTMPA-------------AT---QSGVDAIAAGNYHSLALK-DGEV 83 (282)
T ss_dssp GSSSCCEEEECSSEEEEEE-TTEEEEEECCSSSTTSCCG-------------GG---GSCCCEEEECSSEEEEEE-TTEE
T ss_pred ccCCCcEEEeCCCeEEEEE-CCEEEEEeCCCCCCCCCCc-------------cC---CCCEEEEEeCCCEEEEEE-CCEE
Confidence 3445667889999999998 9999999999999998633 11 258999999999999996 9999
Q ss_pred EEEeCCCCCCCcCCCCCCCCccCCCceeecCCceeEEEEeecCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccccceE
Q 042844 86 WAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSR 165 (372)
Q Consensus 86 ~~~G~n~~gqlg~~~~~~~~~~~~p~~i~~~~~~~i~~i~~g~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~p~~ 165 (372)
|+||.|.++|||. |..+. .+|++|+||..|+++|+ +|+||+||.|.+||||...
T Consensus 84 ~~wG~n~~Gqlg~-----------P~~~~----~~v~~ia~G~~hs~al~-~G~v~~wG~n~~gqlg~~~---------- 137 (282)
T 3qhy_B 84 IAWGGNEDGQTTV-----------PAEAR----SGVDAIAAGAWASYALK-DGKVIAWGDDSDGQTTVPA---------- 137 (282)
T ss_dssp EEEECCTTSTTCC-----------CGGGS----SSEEEEEEETTEEEEEE-TTEEEEEECCTTSTTSCCG----------
T ss_pred EEeeCCCCCCCCC-----------CcccC----CCeEEEECcCCEEEEEe-CCeEEEecCCCCCcCCCCc----------
Confidence 9999999999985 33222 37999999999999999 9999999999999998421
Q ss_pred ecccCCCcEEEEEecCCeEEEEeCCCcEEEEeCCCCCCCCCCCCCCcCCCCCCCcCCCCCCccccchhhHHHhhhhhhcc
Q 042844 166 VEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEG 245 (372)
Q Consensus 166 i~~~~~~~i~~I~~g~~~~~~lt~~g~vy~wG~n~~gqlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (372)
....+|++|+||.+|+++|+ +|+||+||.|.++||+..
T Consensus 138 ---~~~~~i~~i~~G~~~~~~l~-~G~v~~wG~n~~gqlg~p-------------------------------------- 175 (282)
T 3qhy_B 138 ---EAQSGVTALDGGVYTALAVK-NGGVIAWGDNYFGQTTVP-------------------------------------- 175 (282)
T ss_dssp ---GGGSSEEEEEECSSEEEEEE-TTEEEEEECCTTSTTSCC--------------------------------------
T ss_pred ---cCCCCeEEEEcccCEEEEEE-CCEEEEecCCCCCCCCCc--------------------------------------
Confidence 11246999999999999999 899999999999999743
Q ss_pred cccccCCCceeceeeecCccEEEEEecCCeeEEEecCCCEEEEeCCCCCccCCCCCCCcccceeeccccEEEecCCCceE
Q 042844 246 MEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFHPVSISSGLGHSL 325 (372)
Q Consensus 246 ~~~~~~~~~~~~p~~i~~~~i~~I~~G~~h~~alt~~G~vy~wG~n~~gqlG~~~~~~~~~P~~v~~~i~~ia~G~~~s~ 325 (372)
..+ ..+|++|+||.+|++|| ++|+||+||.|.++|||. |.+...+|++|+||.+|++
T Consensus 176 -------------~~~-~~~v~~i~~G~~hs~al-~~G~v~~wG~n~~gqlg~--------p~~~~~~v~~i~~G~~h~~ 232 (282)
T 3qhy_B 176 -------------AEA-QSGVDDVAGGIFHSLAL-KDGKVIAWGDNRYKQTTV--------PTEALSGVSAIASGEWYSL 232 (282)
T ss_dssp -------------GGG-GSSEEEEEECSSEEEEE-ETTEEEEEECCTTSTTCC--------CGGGGSSCCEEEECSSCEE
T ss_pred -------------eec-CCCeEEEEecCCEEEEE-ECCeEEEEECCCCCCCCC--------CcccCCCceEEEcCCCEEE
Confidence 001 35699999999999999 899999999999999985 3444568999999999999
Q ss_pred EEEeeccccccCCCccEEEecCCCCCCccCCC
Q 042844 326 AICEVRSSNVTGGARGIVSWGWNRSSQLGRMG 357 (372)
Q Consensus 326 ~l~~~~~~~~~~~~g~v~~wG~n~~gqLG~~~ 357 (372)
+++ +|+||+||+|.+||++...
T Consensus 233 al~----------~g~v~~wG~n~~gq~~v~~ 254 (282)
T 3qhy_B 233 ALK----------NGKVIAWGSSRTAPSSVQS 254 (282)
T ss_dssp EEE----------TTEEEEESTTCCCCGGGSS
T ss_pred EEE----------CCEEEEecCCCCccccCCC
Confidence 999 8999999999999999854
No 12
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=100.00 E-value=1.7e-45 Score=333.32 Aligned_cols=214 Identities=28% Similarity=0.438 Sum_probs=182.3
Q ss_pred CcEEEEeCCCCCccCCCCCCCCCCCCccceeecCCCCCCeEEEecCCCceEEEecCCcEEEEeCCCCCCCcCCCCCCCCc
Q 042844 27 TAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRAT 106 (372)
Q Consensus 27 g~vy~wG~n~~gqLG~~~~~~~~~~~~~~p~~i~~~~~~i~~I~~G~~h~~~lt~~G~v~~~G~n~~gqlg~~~~~~~~~ 106 (372)
.+||+||.|...++.. .+++.+ .+|++|+||..|+++|+ ||+||+||.|.+||||...
T Consensus 2 ~~v~~WG~n~~~~~~~--------------~p~~~~-~~i~~ia~G~~h~~~l~-~G~v~~wG~n~~Gqlg~p~------ 59 (282)
T 3qhy_B 2 TSVVAWGGNNDWGEAT--------------VPAEAQ-SGVDAIAGGYFHGLALK-GGKVLGWGANLNGQLTMPA------ 59 (282)
T ss_dssp CEEEEECSCCTTSTTC--------------CCGGGS-SSCCEEEECSSEEEEEE-TTEEEEEECCSSSTTSCCG------
T ss_pred eEEEEeCCCCCcCccc--------------CCcccc-CCCcEEEeCCCeEEEEE-CCEEEEEeCCCCCCCCCCc------
Confidence 3699999986544322 222323 48999999999999998 9999999999999999521
Q ss_pred cCCCceeecCCceeEEEEeecCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccccceEecccCCCcEEEEEecCCeEEE
Q 042844 107 WNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALA 186 (372)
Q Consensus 107 ~~~p~~i~~~~~~~i~~i~~g~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~p~~i~~~~~~~i~~I~~g~~~~~~ 186 (372)
. ...+|++|+||..|+++|+ +|+||+||.|.+||||. |.++. .+|++|+||.+|+++
T Consensus 60 -----~----~~~~i~~ia~G~~hs~~l~-~G~v~~wG~n~~Gqlg~---------P~~~~----~~v~~ia~G~~hs~a 116 (282)
T 3qhy_B 60 -----A----TQSGVDAIAAGNYHSLALK-DGEVIAWGGNEDGQTTV---------PAEAR----SGVDAIAAGAWASYA 116 (282)
T ss_dssp -----G----GGSCCCEEEECSSEEEEEE-TTEEEEEECCTTSTTCC---------CGGGS----SSEEEEEEETTEEEE
T ss_pred -----c----CCCCEEEEEeCCCEEEEEE-CCEEEEeeCCCCCCCCC---------CcccC----CCeEEEECcCCEEEE
Confidence 1 1237899999999999996 99999999999999985 33322 479999999999999
Q ss_pred EeCCCcEEEEeCCCCCCCCCCCCCCcCCCCCCCcCCCCCCccccchhhHHHhhhhhhcccccccCCCceeceeeecCccE
Q 042844 187 QTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEV 266 (372)
Q Consensus 187 lt~~g~vy~wG~n~~gqlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~i 266 (372)
|+ +|+||+||.|.++|||... + ...+|
T Consensus 117 l~-~G~v~~wG~n~~gqlg~~~-------------------------------------------------~---~~~~i 143 (282)
T 3qhy_B 117 LK-DGKVIAWGDDSDGQTTVPA-------------------------------------------------E---AQSGV 143 (282)
T ss_dssp EE-TTEEEEEECCTTSTTSCCG-------------------------------------------------G---GGSSE
T ss_pred Ee-CCeEEEecCCCCCcCCCCc-------------------------------------------------c---CCCCe
Confidence 99 9999999999999997540 0 03569
Q ss_pred EEEEecCCeeEEEecCCCEEEEeCCCCCccCCCCCCCcccceeeccccEEEecCCCceEEEEeeccccccCCCccEEEec
Q 042844 267 VDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWG 346 (372)
Q Consensus 267 ~~I~~G~~h~~alt~~G~vy~wG~n~~gqlG~~~~~~~~~P~~v~~~i~~ia~G~~~s~~l~~~~~~~~~~~~g~v~~wG 346 (372)
++|+||..|+++|+ +|+||+||.|.++||| .|.++..+|++|+||.+|+++| + +|+||+||
T Consensus 144 ~~i~~G~~~~~~l~-~G~v~~wG~n~~gqlg--------~p~~~~~~v~~i~~G~~hs~al-~---------~G~v~~wG 204 (282)
T 3qhy_B 144 TALDGGVYTALAVK-NGGVIAWGDNYFGQTT--------VPAEAQSGVDDVAGGIFHSLAL-K---------DGKVIAWG 204 (282)
T ss_dssp EEEEECSSEEEEEE-TTEEEEEECCTTSTTS--------CCGGGGSSEEEEEECSSEEEEE-E---------TTEEEEEE
T ss_pred EEEEcccCEEEEEE-CCEEEEecCCCCCCCC--------CceecCCCeEEEEecCCEEEEE-E---------CCeEEEEE
Confidence 99999999999999 8999999999999998 4666678999999999999999 9 99999999
Q ss_pred CCCCCCccCCC
Q 042844 347 WNRSSQLGRMG 357 (372)
Q Consensus 347 ~n~~gqLG~~~ 357 (372)
.|.+||||.+.
T Consensus 205 ~n~~gqlg~p~ 215 (282)
T 3qhy_B 205 DNRYKQTTVPT 215 (282)
T ss_dssp CCTTSTTCCCG
T ss_pred CCCCCCCCCCc
Confidence 99999999876
No 13
>4gbf_A Phikz131; 7-bladed beta-propeller, possibly participates in binding of phage to the HOST cell, viral protein; 1.95A {Pseudomonas phage phikz}
Probab=96.19 E-value=0.016 Score=49.29 Aligned_cols=71 Identities=14% Similarity=0.272 Sum_probs=58.0
Q ss_pred eEEEEeecCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccccceEecccCCCcEEEEEecCCeEEEEeCCCcEEEEeCC
Q 042844 120 NVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYS 199 (372)
Q Consensus 120 ~i~~i~~g~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~p~~i~~~~~~~i~~I~~g~~~~~~lt~~g~vy~wG~n 199 (372)
.+-.|+-...|++++--+++|+.||.+..||+-.... . .+..++.+|+++++-+..-+.+-.||..
T Consensus 310 ~i~~VsG~y~H~vvi~gd~el~sFG~~sNGQ~~ip~t----a----------gPfla~~AG~~fTVTVn~~nyv~FWGDS 375 (400)
T 4gbf_A 310 PIGGVSGLYTHYTVMYGDGQIAFFGNNDNGQCDVDDH----A----------GPYIQLAAGHNFTVTVNTLNQVMFWGDS 375 (400)
T ss_dssp CCCCCBCSSSEEEC-CTTTCCCEEECCTTSTTCCCGG----G----------CCEEEEEECSSEEEEEETTCCEEEEECC
T ss_pred ccccccccccceEEEecCceeEEeccCCCCceecCCC----c----------chHHhHhccCCeEEEEeceeeEEEecCC
Confidence 4667777888999999999999999999999865322 1 2488999999999999999999999987
Q ss_pred CCCCC
Q 042844 200 ADGRI 204 (372)
Q Consensus 200 ~~gql 204 (372)
....|
T Consensus 376 PDNSL 380 (400)
T 4gbf_A 376 PDNSL 380 (400)
T ss_dssp TTSTT
T ss_pred CCcce
Confidence 65544
No 14
>4gbf_A Phikz131; 7-bladed beta-propeller, possibly participates in binding of phage to the HOST cell, viral protein; 1.95A {Pseudomonas phage phikz}
Probab=95.88 E-value=0.017 Score=49.23 Aligned_cols=72 Identities=17% Similarity=0.182 Sum_probs=60.7
Q ss_pred CCeEEEecCCCceEEEecCCcEEEEeCCCCCCCcCCCCCCCCccCCCceeecCCceeEEEEeecCcEEEEEeCCCcEEEE
Q 042844 64 SDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVW 143 (372)
Q Consensus 64 ~~i~~I~~G~~h~~~lt~~G~v~~~G~n~~gqlg~~~~~~~~~~~~p~~i~~~~~~~i~~i~~g~~~~~~lt~~g~v~~~ 143 (372)
..|..|+....|++++--|++|++||.+..||+-..... -+..++.+|..+++-++.-..+-.|
T Consensus 309 n~i~~VsG~y~H~vvi~gd~el~sFG~~sNGQ~~ip~ta----------------gPfla~~AG~~fTVTVn~~nyv~FW 372 (400)
T 4gbf_A 309 NPIGGVSGLYTHYTVMYGDGQIAFFGNNDNGQCDVDDHA----------------GPYIQLAAGHNFTVTVNTLNQVMFW 372 (400)
T ss_dssp SCCCCCBCSSSEEEC-CTTTCCCEEECCTTSTTCCCGGG----------------CCEEEEEECSSEEEEEETTCCEEEE
T ss_pred CccccccccccceEEEecCceeEEeccCCCCceecCCCc----------------chHHhHhccCCeEEEEeceeeEEEe
Confidence 468999999999999999999999999999998764443 2577899999999999999999999
Q ss_pred eCCCCCCC
Q 042844 144 GKSKRGQL 151 (372)
Q Consensus 144 G~n~~gql 151 (372)
|......|
T Consensus 373 GDSPDNSL 380 (400)
T 4gbf_A 373 GDSPDNSL 380 (400)
T ss_dssp ECCTTSTT
T ss_pred cCCCCcce
Confidence 98765443
No 15
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=95.62 E-value=1.4 Score=40.80 Aligned_cols=145 Identities=13% Similarity=0.119 Sum_probs=87.5
Q ss_pred eeeeeEEEEeeCCCcEEEEeCCCCCccCCCCCCCCCCCCccceeecCCCCCCeEEEecCCCceEEEecCCcEEEEeCCCC
Q 042844 14 VLTSRIFMRSASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNE 93 (372)
Q Consensus 14 ~~~~~~~~~l~~~g~vy~wG~n~~gqLG~~~~~~~~~~~~~~p~~i~~~~~~i~~I~~G~~h~~~lt~~G~v~~~G~n~~ 93 (372)
+.....++.-..||.|++|-... ......+..-...|..++......+.-..||.|..|-....
T Consensus 140 ~~d~~~l~~g~~dg~i~iwd~~~----------------~~~~~~~~~h~~~v~~l~~~~~~l~sg~~dg~i~vwd~~~~ 203 (435)
T 1p22_A 140 QYDDQKIVSGLRDNTIKIWDKNT----------------LECKRILTGHTGSVLCLQYDERVIITGSSDSTVRVWDVNTG 203 (435)
T ss_dssp ECCSSEEEEEESSSCEEEEESSS----------------CCEEEEECCCSSCEEEEECCSSEEEEEETTSCEEEEESSSC
T ss_pred EECCCEEEEEeCCCeEEEEeCCC----------------CeEEEEEcCCCCcEEEEEECCCEEEEEcCCCeEEEEECCCC
Confidence 33455566667778888885321 01112233333578888887777777788999999975432
Q ss_pred CCCcCCCCCCCCccCCCceeecCCceeEEEEeecCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccccceEecccCCCc
Q 042844 94 VQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEK 173 (372)
Q Consensus 94 gqlg~~~~~~~~~~~~p~~i~~~~~~~i~~i~~g~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~p~~i~~~~~~~ 173 (372)
..+ ..+. .....|..+.......+.-+.||.|..|-..... ...+..........
T Consensus 204 ~~~--------------~~~~-~h~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~~----------~~~~~~~~~~~~~~ 258 (435)
T 1p22_A 204 EML--------------NTLI-HHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPT----------DITLRRVLVGHRAA 258 (435)
T ss_dssp CEE--------------EEEC-CCCSCEEEEECCTTEEEEEETTSCEEEEECSSSS----------CCEEEEEECCCSSC
T ss_pred cEE--------------EEEc-CCCCcEEEEEEcCCEEEEeeCCCcEEEEeCCCCC----------CceeeeEecCCCCc
Confidence 110 0111 1123566777677777888899999999643211 01111111122346
Q ss_pred EEEEEecCCeEEEEeCCCcEEEEeCC
Q 042844 174 IVKVSFGWGHALAQTEDGKLFGWGYS 199 (372)
Q Consensus 174 i~~I~~g~~~~~~lt~~g~vy~wG~n 199 (372)
|..++......++-+.+|.|..|-..
T Consensus 259 v~~~~~~~~~l~s~~~dg~i~vwd~~ 284 (435)
T 1p22_A 259 VNVVDFDDKYIVSASGDRTIKVWNTS 284 (435)
T ss_dssp EEEEEEETTEEEEEETTSEEEEEETT
T ss_pred EEEEEeCCCEEEEEeCCCeEEEEECC
Confidence 88888878888888999999999764
No 16
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=95.30 E-value=1.8 Score=40.04 Aligned_cols=231 Identities=10% Similarity=0.073 Sum_probs=127.8
Q ss_pred eeeeEEEEeeCCCcEEEEeCCCCCccCCCCCCCCCCCCccceeecCCCCCCeEEEecCCCceEEEecCCcEEEEeCCCCC
Q 042844 15 LTSRIFMRSASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEV 94 (372)
Q Consensus 15 ~~~~~~~~l~~~g~vy~wG~n~~gqLG~~~~~~~~~~~~~~p~~i~~~~~~i~~I~~G~~h~~~lt~~G~v~~~G~n~~g 94 (372)
.....++.-..||.|.+|-.... + ....+..-...|..++......+.-..||.|..|-.....
T Consensus 181 ~~~~~l~sg~~dg~i~vwd~~~~-~---------------~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~~ 244 (435)
T 1p22_A 181 YDERVIITGSSDSTVRVWDVNTG-E---------------MLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPT 244 (435)
T ss_dssp CCSSEEEEEETTSCEEEEESSSC-C---------------EEEEECCCCSCEEEEECCTTEEEEEETTSCEEEEECSSSS
T ss_pred ECCCEEEEEcCCCeEEEEECCCC-c---------------EEEEEcCCCCcEEEEEEcCCEEEEeeCCCcEEEEeCCCCC
Confidence 34556666677888888865321 1 1112222335688888888888888899999999753221
Q ss_pred CCcCCCCCCCCccCCCceeecCCceeEEEEeecCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccccceEecccCCCcE
Q 042844 95 QLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKI 174 (372)
Q Consensus 95 qlg~~~~~~~~~~~~p~~i~~~~~~~i~~i~~g~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~p~~i~~~~~~~i 174 (372)
.+ .+..........|..+.......+.-+.||.|..|-....- ....+. .....|
T Consensus 245 ~~------------~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~------------~~~~~~-~~~~~v 299 (435)
T 1p22_A 245 DI------------TLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCE------------FVRTLN-GHKRGI 299 (435)
T ss_dssp CC------------EEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTTCC------------EEEEEE-CCSSCE
T ss_pred Cc------------eeeeEecCCCCcEEEEEeCCCEEEEEeCCCeEEEEECCcCc------------EEEEEc-CCCCcE
Confidence 10 00011111223566666667777778889999999643210 011111 112457
Q ss_pred EEEEecCCeEEEEeCCCcEEEEeCCCCCCCCCCCCCCcCCCCCCCcCCCCCCccccchhhHHHhhhhhhcccccccCCCc
Q 042844 175 VKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPI 254 (372)
Q Consensus 175 ~~I~~g~~~~~~lt~~g~vy~wG~n~~gqlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (372)
..++......++-..+|.|..|-......+
T Consensus 300 ~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~-------------------------------------------------- 329 (435)
T 1p22_A 300 ACLQYRDRLVVSGSSDNTIRLWDIECGACL-------------------------------------------------- 329 (435)
T ss_dssp EEEEEETTEEEEEETTSCEEEEETTTCCEE--------------------------------------------------
T ss_pred EEEEeCCCEEEEEeCCCeEEEEECCCCCEE--------------------------------------------------
Confidence 777777788888889999999976432111
Q ss_pred eeceeeec--CccEEEEEecCCeeEEEecCCCEEEEeCCCCCccCCCCCCCccccee-e---ccccEEEecCCCceEEEE
Q 042844 255 IWEPFLVE--GVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVD-I---NFHPVSISSGLGHSLAIC 328 (372)
Q Consensus 255 ~~~p~~i~--~~~i~~I~~G~~h~~alt~~G~vy~wG~n~~gqlG~~~~~~~~~P~~-v---~~~i~~ia~G~~~s~~l~ 328 (372)
..+. ...|..++....+.+.-..||.|.+|-........... ...+.. + ...|..++......+.-.
T Consensus 330 ----~~~~~h~~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~---~~~~~~~~~~h~~~v~~l~~~~~~l~s~s 402 (435)
T 1p22_A 330 ----RVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPA---GTLCLRTLVEHSGRVFRLQFDEFQIVSSS 402 (435)
T ss_dssp ----EEECCCSSCEEEEECCSSEEEEEETTSCEEEEEHHHHTSTTSCT---TTTEEEEECCCSSCCCCEEECSSCEEECC
T ss_pred ----EEEeCCcCcEEEEEecCCEEEEEeCCCcEEEEECCCCCCccccc---cchheeeccCCCCCeEEEEeCCCEEEEEe
Confidence 0011 34567777766666666789999999743211110000 000111 1 145666666444444445
Q ss_pred eeccccccCCCccEEEecCCCCCC
Q 042844 329 EVRSSNVTGGARGIVSWGWNRSSQ 352 (372)
Q Consensus 329 ~~~~~~~~~~~g~v~~wG~n~~gq 352 (372)
. ||.|..|--....+
T Consensus 403 ~---------Dg~i~iwd~~~~~~ 417 (435)
T 1p22_A 403 H---------DDTILIWDFLNDPA 417 (435)
T ss_dssp S---------SSEEEEEC------
T ss_pred C---------CCEEEEEECCCCCC
Confidence 5 89999997665433
No 17
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=94.43 E-value=1.4 Score=44.00 Aligned_cols=19 Identities=16% Similarity=0.181 Sum_probs=14.7
Q ss_pred cCCeeEEEecCCCEEEEeC
Q 042844 272 GFDHSLVLGRNGVLLSCGS 290 (372)
Q Consensus 272 G~~h~~alt~~G~vy~wG~ 290 (372)
...|++++..++++|++|-
T Consensus 597 R~~~~~~~~~~~~iyv~GG 615 (695)
T 2zwa_A 597 RYGSQIKYITPRKLLIVGG 615 (695)
T ss_dssp CBSCEEEEEETTEEEEECC
T ss_pred cccceEEEeCCCEEEEECC
Confidence 3567777777799999984
No 18
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=93.41 E-value=4.8 Score=37.14 Aligned_cols=72 Identities=4% Similarity=-0.068 Sum_probs=38.9
Q ss_pred ccEEEEEecCCeeEEEecCCCEEEEeCCCCCccCCCCCCCcccceeeccccEEEecCCCceEEEEeeccccccCCCccEE
Q 042844 264 VEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFHPVSISSGLGHSLAICEVRSSNVTGGARGIV 343 (372)
Q Consensus 264 ~~i~~I~~G~~h~~alt~~G~vy~wG~n~~gqlG~~~~~~~~~P~~v~~~i~~ia~G~~~s~~l~~~~~~~~~~~~g~v~ 343 (372)
..+..++......++-..+|.|..|-......+..-. .+..-...|..++......+.-.. ||.|.
T Consensus 320 ~~v~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~-----~~~~~~~~v~~~~~~~~~l~s~~~---------dg~v~ 385 (445)
T 2ovr_B 320 SLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQ-----GPNKHQSAVTCLQFNKNFVITSSD---------DGTVK 385 (445)
T ss_dssp SCEEEEEEETTEEEEEETTSCEEEEETTTCCEEEEEC-----STTSCSSCEEEEEECSSEEEEEET---------TSEEE
T ss_pred ccEEEEEEeCCEEEEEeCCCeEEEEECCCCcEEEEEc-----cCCCCCCCEEEEEECCCEEEEEeC---------CCeEE
Confidence 3455555556666667789999999754321111000 000012345566665555555555 77888
Q ss_pred EecCCC
Q 042844 344 SWGWNR 349 (372)
Q Consensus 344 ~wG~n~ 349 (372)
.|-...
T Consensus 386 iwd~~~ 391 (445)
T 2ovr_B 386 LWDLKT 391 (445)
T ss_dssp EEETTT
T ss_pred EEECCC
Confidence 885443
No 19
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=92.60 E-value=8.6 Score=37.90 Aligned_cols=70 Identities=14% Similarity=0.006 Sum_probs=38.2
Q ss_pred CCeeEEEecCCCEEEEeCCCCCccCCCCCCCcccceeec---cccEEEe----cCCCceE-EEEeeccccccCCCccEEE
Q 042844 273 FDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDIN---FHPVSIS----SGLGHSL-AICEVRSSNVTGGARGIVS 344 (372)
Q Consensus 273 ~~h~~alt~~G~vy~wG~n~~gqlG~~~~~~~~~P~~v~---~~i~~ia----~G~~~s~-~l~~~~~~~~~~~~g~v~~ 344 (372)
..|.+++..+|+||+.|-...+.. .........+...+ ..+..+. .-..|+. ++.. +|+||+
T Consensus 457 ~~~~~~~l~~g~i~v~GG~~~~~~-~~~~~~~~~v~~ydp~t~~W~~~~~~~~~R~~hs~a~ll~---------dg~v~v 526 (656)
T 1k3i_A 457 TFHTSVVLPDGSTFITGGQRRGIP-FEDSTPVFTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLP---------DGRVFN 526 (656)
T ss_dssp BSCEEEECTTSCEEEECCBSBCCT-TCCCSBCCCCEEEEGGGTEEEECCCCSSCCCTTEEEEECT---------TSCEEE
T ss_pred ccCCeEECCCCCEEEECCcccCcC-cCCCCcccceEEEcCCCCceeecCCCCCccccccHhhcCC---------CcEEEe
Confidence 357777777999999995443321 11111111122211 2233332 2345664 4557 999999
Q ss_pred ecCCCCCC
Q 042844 345 WGWNRSSQ 352 (372)
Q Consensus 345 wG~n~~gq 352 (372)
.|.+.++.
T Consensus 527 ~GG~~~~~ 534 (656)
T 1k3i_A 527 GGGGLCGD 534 (656)
T ss_dssp EECCCCTT
T ss_pred cCCCCCCC
Confidence 99987653
No 20
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=91.80 E-value=7.8 Score=35.65 Aligned_cols=141 Identities=9% Similarity=0.038 Sum_probs=85.0
Q ss_pred eeeeeEEEEeeCCCcEEEEeCCCCCccCCCCCCCCCCCCccceeecCCCCCCeEEEecCCCceEEEecCCcEEEEeCCCC
Q 042844 14 VLTSRIFMRSASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNE 93 (372)
Q Consensus 14 ~~~~~~~~~l~~~g~vy~wG~n~~gqLG~~~~~~~~~~~~~~p~~i~~~~~~i~~I~~G~~h~~~lt~~G~v~~~G~n~~ 93 (372)
......++.-..||.|++|-.... + ....+..-...|..++......+.-..||.|..|-....
T Consensus 126 ~~~g~~l~sg~~dg~i~vwd~~~~-~---------------~~~~~~~h~~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~ 189 (445)
T 2ovr_B 126 QFCGNRIVSGSDDNTLKVWSAVTG-K---------------CLRTLVGHTGGVWSSQMRDNIIISGSTDRTLKVWNAETG 189 (445)
T ss_dssp EEETTEEEEEETTSCEEEEETTTC-C---------------EEEECCCCSSCEEEEEEETTEEEEEETTSCEEEEETTTT
T ss_pred EEcCCEEEEEECCCcEEEEECCCC-c---------------EEEEEcCCCCCEEEEEecCCEEEEEeCCCeEEEEECCcC
Confidence 334455666678888888864321 1 111222233467778777777777888999999975321
Q ss_pred CCCcCCCCCCCCccCCCceeecCCceeEEEEeecCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccccceEecccCCCc
Q 042844 94 VQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEK 173 (372)
Q Consensus 94 gqlg~~~~~~~~~~~~p~~i~~~~~~~i~~i~~g~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~p~~i~~~~~~~ 173 (372)
..+ ..+. .....|..+.......+.-+.||.|+.|-..... ....+. .....
T Consensus 190 ~~~--------------~~~~-~h~~~v~~~~~~~~~l~s~s~dg~i~~wd~~~~~------------~~~~~~-~~~~~ 241 (445)
T 2ovr_B 190 ECI--------------HTLY-GHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQ------------CLHVLM-GHVAA 241 (445)
T ss_dssp EEE--------------EEEC-CCSSCEEEEEEETTEEEEEETTSEEEEEESSSCC------------EEEEEE-CCSSC
T ss_pred cEE--------------EEEC-CCCCcEEEEEecCCEEEEEeCCCEEEEEECCCCc------------EEEEEc-CCccc
Confidence 110 0111 1122466666667777888899999999643210 000111 12245
Q ss_pred EEEEEecCCeEEEEeCCCcEEEEeC
Q 042844 174 IVKVSFGWGHALAQTEDGKLFGWGY 198 (372)
Q Consensus 174 i~~I~~g~~~~~~lt~~g~vy~wG~ 198 (372)
|..++......++-+.+|.|+.|-.
T Consensus 242 v~~~~~~~~~l~~~~~dg~i~iwd~ 266 (445)
T 2ovr_B 242 VRCVQYDGRRVVSGAYDFMVKVWDP 266 (445)
T ss_dssp EEEEEECSSCEEEEETTSCEEEEEG
T ss_pred EEEEEECCCEEEEEcCCCEEEEEEC
Confidence 7777777777888888999999975
No 21
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=91.14 E-value=7.4 Score=34.14 Aligned_cols=145 Identities=9% Similarity=0.065 Sum_probs=77.1
Q ss_pred eeEEEEeeCCCcEEEEeCCCCCccCCCCCCCCCCCCccceeecCCCCCCeEEEecCCC------ceEEEecCCcEEEEeC
Q 042844 17 SRIFMRSASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHY------HSLAVTNNGAVWAWGR 90 (372)
Q Consensus 17 ~~~~~~l~~~g~vy~wG~n~~gqLG~~~~~~~~~~~~~~p~~i~~~~~~i~~I~~G~~------h~~~lt~~G~v~~~G~ 90 (372)
...+++-..++.|.+|-......+ .......-+.....|..++.... ..+.-..||.|..|-.
T Consensus 34 ~~~~~~~~~~~~v~vw~~~~~~~~-----------~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~ 102 (366)
T 3k26_A 34 DPLVFATVGSNRVTLYECHSQGEI-----------RLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINP 102 (366)
T ss_dssp SCEEEEEEETTEEEEEEECGGGCE-----------EEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECT
T ss_pred CceEEEECCCCEEEEEEcCCCcEE-----------EeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEc
Confidence 455666677888888865432111 11111111112245666666544 4455678899999964
Q ss_pred CCCCCCcCCCCCCCCccCCCceeecCCceeEEEEee---cCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccccceEec
Q 042844 91 NNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFA---SGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVE 167 (372)
Q Consensus 91 n~~gqlg~~~~~~~~~~~~p~~i~~~~~~~i~~i~~---g~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~p~~i~ 167 (372)
..... ...+.. ....|..+.. .....+.-+.||.|+.|-.... .....+.
T Consensus 103 ~~~~~--------------~~~~~~-~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~------------~~~~~~~ 155 (366)
T 3k26_A 103 ITMQC--------------IKHYVG-HGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTD------------TLVAIFG 155 (366)
T ss_dssp TTCCE--------------EEEEES-CCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTT------------EEEEEEC
T ss_pred hhceE--------------eeeecC-CCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecC------------eEEEEec
Confidence 32110 111111 1224555544 3455666778999999964221 0111111
Q ss_pred --ccCCCcEEEEEec--CCeEEEEeCCCcEEEEeCC
Q 042844 168 --ALAGEKIVKVSFG--WGHALAQTEDGKLFGWGYS 199 (372)
Q Consensus 168 --~~~~~~i~~I~~g--~~~~~~lt~~g~vy~wG~n 199 (372)
......|..++.. ....+.-..+|.|+.|-..
T Consensus 156 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~ 191 (366)
T 3k26_A 156 GVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRIN 191 (366)
T ss_dssp STTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESC
T ss_pred ccccccCceeEEEECCCCCEEEEecCCCCEEEEECC
Confidence 1123457777765 3456666788999999764
No 22
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=89.87 E-value=9.9 Score=33.51 Aligned_cols=112 Identities=16% Similarity=0.170 Sum_probs=60.7
Q ss_pred CCCeEEEecC----CCceEEEecCCcEEEEeCCCCCCCcCCCCCCCCccCCCceeecCCceeEEEEeec----CcEEEEE
Q 042844 63 PSDVTSVSAG----HYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFAS----GVVSSAI 134 (372)
Q Consensus 63 ~~~i~~I~~G----~~h~~~lt~~G~v~~~G~n~~gqlg~~~~~~~~~~~~p~~i~~~~~~~i~~i~~g----~~~~~~l 134 (372)
...|..++.. ....+.-..||.|..|-..... ..+..........|..++.. ....+.-
T Consensus 55 ~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~-------------~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~ 121 (379)
T 3jrp_A 55 EGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGR-------------WSQIAVHAVHSASVNSVQWAPHEYGPLLLVA 121 (379)
T ss_dssp SSCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTE-------------EEEEEEECCCSSCEEEEEECCGGGCSEEEEE
T ss_pred CCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCc-------------eeEeeeecCCCcceEEEEeCCCCCCCEEEEe
Confidence 3568888765 4555666789999999643210 00111111112234454444 3456777
Q ss_pred eCCCcEEEEeCCCCCCCCCCCCCcccccceEecccCCCcEEEEEec---------------CCeEEEEeCCCcEEEEeC
Q 042844 135 GDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFG---------------WGHALAQTEDGKLFGWGY 198 (372)
Q Consensus 135 t~~g~v~~~G~n~~gqlg~~~~~~~~~~p~~i~~~~~~~i~~I~~g---------------~~~~~~lt~~g~vy~wG~ 198 (372)
+.+|.|..|-...... ..+..+. .....|..++.. ....++-..+|.|+.|-.
T Consensus 122 ~~d~~i~v~d~~~~~~----------~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~ 189 (379)
T 3jrp_A 122 SSDGKVSVVEFKENGT----------TSPIIID-AHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKY 189 (379)
T ss_dssp ETTSEEEEEECCTTSC----------CCEEEEE-CCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEE
T ss_pred cCCCcEEEEecCCCCc----------eeeEEec-CCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEe
Confidence 8899999996532110 1111111 122346666654 345666678899999964
No 23
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=89.72 E-value=11 Score=34.00 Aligned_cols=141 Identities=13% Similarity=0.039 Sum_probs=78.7
Q ss_pred eeEEEEeeCCCcEEEEeCCCCCccCCCCCCCCCCCCccceeecCCCCCCeEEEecCC--CceEEEecCCcEEEEeCCCCC
Q 042844 17 SRIFMRSASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGH--YHSLAVTNNGAVWAWGRNNEV 94 (372)
Q Consensus 17 ~~~~~~l~~~g~vy~wG~n~~gqLG~~~~~~~~~~~~~~p~~i~~~~~~i~~I~~G~--~h~~~lt~~G~v~~~G~n~~g 94 (372)
...+++...++.|++|-.... + ...-.... -...|..++... .+.++-..||.|..|-.....
T Consensus 103 ~~~l~~~~~d~~v~lw~~~~~-~-------------~~~~~~~~-~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~ 167 (401)
T 4aez_A 103 NLNVVAVALERNVYVWNADSG-S-------------VSALAETD-ESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQT 167 (401)
T ss_dssp TTSEEEEEETTEEEEEETTTC-C-------------EEEEEECC-TTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCC
T ss_pred CCCEEEEECCCeEEEeeCCCC-c-------------EeEeeecC-CCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCe
Confidence 345667778999999976431 1 11111111 224566666543 344555678999999753321
Q ss_pred CCcCCCCCCCCccCCCceeecCCceeEEEEeecCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccccceEecccCCCcE
Q 042844 95 QLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKI 174 (372)
Q Consensus 95 qlg~~~~~~~~~~~~p~~i~~~~~~~i~~i~~g~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~p~~i~~~~~~~i 174 (372)
.+ ..+. .....|..++......+.-+.+|.|+.|-....+ .....+. .....|
T Consensus 168 ~~--------------~~~~-~~~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~-----------~~~~~~~-~~~~~v 220 (401)
T 4aez_A 168 KL--------------RTMA-GHQARVGCLSWNRHVLSSGSRSGAIHHHDVRIAN-----------HQIGTLQ-GHSSEV 220 (401)
T ss_dssp EE--------------EEEC-CCSSCEEEEEEETTEEEEEETTSEEEEEETTSSS-----------CEEEEEE-CCSSCE
T ss_pred EE--------------EEec-CCCCceEEEEECCCEEEEEcCCCCEEEEecccCc-----------ceeeEEc-CCCCCe
Confidence 10 1111 1223566666667777788899999999653211 0011111 112356
Q ss_pred EEEEec--CCeEEEEeCCCcEEEEeCC
Q 042844 175 VKVSFG--WGHALAQTEDGKLFGWGYS 199 (372)
Q Consensus 175 ~~I~~g--~~~~~~lt~~g~vy~wG~n 199 (372)
..++.. ....+.-+.+|.|+.|-..
T Consensus 221 ~~~~~~~~~~~l~s~~~d~~v~iwd~~ 247 (401)
T 4aez_A 221 CGLAWRSDGLQLASGGNDNVVQIWDAR 247 (401)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred eEEEEcCCCCEEEEEeCCCeEEEccCC
Confidence 666664 3455566778999999764
No 24
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=89.48 E-value=9.7 Score=32.88 Aligned_cols=107 Identities=9% Similarity=0.128 Sum_probs=54.7
Q ss_pred CCeEEEecCC--CceEEEecCCcEEEEeCCCCCCCcCCCCCCCCccCCCceeecCCceeEEEEee--cCcEEEEEeCCCc
Q 042844 64 SDVTSVSAGH--YHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFA--SGVVSSAIGDDGS 139 (372)
Q Consensus 64 ~~i~~I~~G~--~h~~~lt~~G~v~~~G~n~~gqlg~~~~~~~~~~~~p~~i~~~~~~~i~~i~~--g~~~~~~lt~~g~ 139 (372)
..|..++... .+.+.-..+|.|+.|-...... ...+.. ....+..+.. .....+.-+.+|.
T Consensus 142 ~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~--------------~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~ 206 (337)
T 1gxr_A 142 PACYALAISPDSKVCFSCCSDGNIAVWDLHNQTL--------------VRQFQG-HTDGASCIDISNDGTKLWTGGLDNT 206 (337)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEETTTTEE--------------EEEECC-CSSCEEEEEECTTSSEEEEEETTSE
T ss_pred CceEEEEECCCCCEEEEEeCCCcEEEEeCCCCce--------------eeeeec-ccCceEEEEECCCCCEEEEEecCCc
Confidence 4566666543 4445566789999997532110 011111 1123444443 3345566678899
Q ss_pred EEEEeCCCCCCCCCCCCCcccccceEecccCCCcEEEEEec--CCeEEEEeCCCcEEEEeCC
Q 042844 140 LWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFG--WGHALAQTEDGKLFGWGYS 199 (372)
Q Consensus 140 v~~~G~n~~gqlg~~~~~~~~~~p~~i~~~~~~~i~~I~~g--~~~~~~lt~~g~vy~wG~n 199 (372)
|+.|-.... . ....+. ....+..++.. ....++-+.+|.|+.|-..
T Consensus 207 i~~~d~~~~----------~--~~~~~~--~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~ 254 (337)
T 1gxr_A 207 VRSWDLREG----------R--QLQQHD--FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVN 254 (337)
T ss_dssp EEEEETTTT----------E--EEEEEE--CSSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred EEEEECCCC----------c--eEeeec--CCCceEEEEECCCCCEEEEEcCCCcEEEEECC
Confidence 999964221 0 000111 12345555543 3345555677888888653
No 25
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=86.55 E-value=27 Score=34.66 Aligned_cols=18 Identities=22% Similarity=0.248 Sum_probs=14.4
Q ss_pred CCeEEEEeCCCcEEEEeC
Q 042844 181 WGHALAQTEDGKLFGWGY 198 (372)
Q Consensus 181 ~~~~~~lt~~g~vy~wG~ 198 (372)
..|++++..+++||++|-
T Consensus 598 ~~~~~~~~~~~~iyv~GG 615 (695)
T 2zwa_A 598 YGSQIKYITPRKLLIVGG 615 (695)
T ss_dssp BSCEEEEEETTEEEEECC
T ss_pred ccceEEEeCCCEEEEECC
Confidence 567877777689999984
No 26
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=85.51 E-value=17 Score=31.28 Aligned_cols=155 Identities=9% Similarity=0.101 Sum_probs=78.1
Q ss_pred eeEEEEeeCCCcEEEEeCCCCCccCCCCCCCCCCCCccceeecCCCCCCeEEEecCCCc-eEEEecCCcEEEEeCCCCCC
Q 042844 17 SRIFMRSASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYH-SLAVTNNGAVWAWGRNNEVQ 95 (372)
Q Consensus 17 ~~~~~~l~~~g~vy~wG~n~~gqLG~~~~~~~~~~~~~~p~~i~~~~~~i~~I~~G~~h-~~~lt~~G~v~~~G~n~~gq 95 (372)
.-..+....||++++.+......+.... .....+.....-...|..++..... .++...||.|..|-......
T Consensus 11 ~v~~~~~s~dg~~~~~~~~~~~~~~~~~------~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~dg~i~iw~~~~~~~ 84 (337)
T 1gxr_A 11 PAYSFHVTADGQMQPVPFPPDALIGPGI------PRHARQINTLNHGEVVCAVTISNPTRHVYTGGKGCVKVWDISHPGN 84 (337)
T ss_dssp ECCEEEECSSSCEEECCCCTTSSSSTTC------CSEEEEEEEECCSSCCCEEEECSSSSEEEEECBSEEEEEETTSTTC
T ss_pred ceeEEEECCCCCEEEeecCCCcEecccc------CCccccceeccCCCceEEEEEecCCcEEEEcCCCeEEEEECCCCCc
Confidence 3445777899999998875543332211 1223333332334567777765433 34444588899987543221
Q ss_pred CcCCCCCCCCccCCCceeec-CCceeEEEEeec--CcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccccceEecccCCC
Q 042844 96 LGRGALESRATWNDPKRVEG-LDQVNVCAAFAS--GVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGE 172 (372)
Q Consensus 96 lg~~~~~~~~~~~~p~~i~~-~~~~~i~~i~~g--~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~p~~i~~~~~~ 172 (372)
. .....+.. .....|..++.. ....++-+.+|.|+.|-.... .. .....+. ....
T Consensus 85 ~-----------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~---------~~-~~~~~~~-~~~~ 142 (337)
T 1gxr_A 85 K-----------SPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAP---------TP-RIKAELT-SSAP 142 (337)
T ss_dssp C-----------SCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC------------EEEEEEE-CSSS
T ss_pred e-----------eeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCC---------Cc-ceeeecc-cCCC
Confidence 0 01111110 111234444333 344556677899999854221 00 0001111 1223
Q ss_pred cEEEEEec--CCeEEEEeCCCcEEEEeCC
Q 042844 173 KIVKVSFG--WGHALAQTEDGKLFGWGYS 199 (372)
Q Consensus 173 ~i~~I~~g--~~~~~~lt~~g~vy~wG~n 199 (372)
.|..++.. ....++-+.+|.|+.|-..
T Consensus 143 ~i~~~~~~~~~~~l~~~~~dg~v~~~d~~ 171 (337)
T 1gxr_A 143 ACYALAISPDSKVCFSCCSDGNIAVWDLH 171 (337)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred ceEEEEECCCCCEEEEEeCCCcEEEEeCC
Confidence 46666654 3456666788899999754
No 27
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=84.03 E-value=20 Score=31.02 Aligned_cols=122 Identities=13% Similarity=0.066 Sum_probs=69.3
Q ss_pred CeEEEecCC--CceEEEecCCcEEEEeCCCCCCCcCCCCCCCCccCCCceeecCCceeEEEEeec---CcEEEEEeCCCc
Q 042844 65 DVTSVSAGH--YHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFAS---GVVSSAIGDDGS 139 (372)
Q Consensus 65 ~i~~I~~G~--~h~~~lt~~G~v~~~G~n~~gqlg~~~~~~~~~~~~p~~i~~~~~~~i~~i~~g---~~~~~~lt~~g~ 139 (372)
.+..+.... .+.+++|++|++|.--....... . + .. + ..++.+|+.+.+- ....+++|++|.
T Consensus 25 ~~~~~~~~~t~~~ll~fT~~G~v~~~~~~~lp~~-----~-~---~~---l-l~~~e~i~~v~~~~~~~~~~v~~T~~G~ 91 (276)
T 3no0_A 25 PVVNILRVPFTEGLFLVSNRGRVYWIAGSQALQG-----S-K---VS---L-KSREEKIVGAFIREKFGNRLLLATKKGY 91 (276)
T ss_dssp CEEEEEEEETTSCEEEEETTSEEEEECSHHHHTS-----E-E---CC---C-SSTTCCEEEEEEGGGSCSEEEEEETTSE
T ss_pred eEEEEEEECCCCEEEEEcCCCeEEEEEhhhCccC-----c-c---cc---c-CCCCCEEEEEECCcCCCCEEEEEeCCCE
Confidence 444444433 44688999999998653221100 0 0 00 2 2235567777651 246889999999
Q ss_pred EEEEeCCCCCCCCCCCCCcccccceEecccCCCcEEEEEe--cCCeEEEEeCCCcEEEEeCCCCCCCCCC
Q 042844 140 LWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSF--GWGHALAQTEDGKLFGWGYSADGRIGNL 207 (372)
Q Consensus 140 v~~~G~n~~gqlg~~~~~~~~~~p~~i~~~~~~~i~~I~~--g~~~~~~lt~~g~vy~wG~n~~gqlg~~ 207 (372)
+...-...+-+-. .-..-+...+++.++.+.. +.++.+++|++|++|.+-....-.+|+.
T Consensus 92 iKr~~l~~~~~~~--------~G~~~i~lkegD~l~~~~~~~~~~~ill~T~~G~~~r~~~~eip~~gR~ 153 (276)
T 3no0_A 92 VKKIPLAEFEYKA--------QGMPIIKLTEGDEVVSIASSVDETHILLFTKKGRVARFSVREVPPSTPG 153 (276)
T ss_dssp EEEEEGGGTTTCS--------TTEECSCCCTTCCEEEEEECCSSCEEEEEETTSEEEEEEGGGSCBCCTT
T ss_pred EEEEEHHHhhhhc--------CCeEEEecCCCCEEEEEEEeCCCCEEEEEECCCEEEEEEhhhCCCcCCC
Confidence 9887654432100 0011111123345555443 4567999999999999987665555543
No 28
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=83.63 E-value=38 Score=33.80 Aligned_cols=145 Identities=14% Similarity=0.149 Sum_probs=75.9
Q ss_pred eeEEEEeeCCCcEEEEeCCCCCccCCCCCCCCCCCCccceeecCCCCCCeEEEecC----CCceEEEecCCcEEEEeCCC
Q 042844 17 SRIFMRSASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAG----HYHSLAVTNNGAVWAWGRNN 92 (372)
Q Consensus 17 ~~~~~~l~~~g~vy~wG~n~~gqLG~~~~~~~~~~~~~~p~~i~~~~~~i~~I~~G----~~h~~~lt~~G~v~~~G~n~ 92 (372)
...++.-..||.|.+|-.... .......+..-...|..++.. ....+.-..||.|+.|-...
T Consensus 21 g~~latg~~dg~I~vwd~~~~--------------~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~ 86 (753)
T 3jro_A 21 GKRLATCSSDKTIKIFEVEGE--------------THKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEEN 86 (753)
T ss_dssp SCCEEEEETTTEEEEEEEETT--------------EEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEET
T ss_pred CCeEEEEECCCcEEEEecCCC--------------CCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCC
Confidence 344555567888888853210 011111222233568888765 34556667899999997432
Q ss_pred CCCCcCCCCCCCCccCCCceeecCCceeEEEEeec----CcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccccceEecc
Q 042844 93 EVQLGRGALESRATWNDPKRVEGLDQVNVCAAFAS----GVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEA 168 (372)
Q Consensus 93 ~gqlg~~~~~~~~~~~~p~~i~~~~~~~i~~i~~g----~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~p~~i~~ 168 (372)
.. ..+..........|..++.. ....+.-+.+|.|..|-...... ..+..+.
T Consensus 87 ~~-------------~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~----------~~~~~~~- 142 (753)
T 3jro_A 87 GR-------------WSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGT----------TSPIIID- 142 (753)
T ss_dssp TE-------------EEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSC----------CCCEEEE-
T ss_pred Cc-------------ccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCC----------cceeEee-
Confidence 10 00111111112245555444 44567778899999996532211 1111111
Q ss_pred cCCCcEEEEEecC---------------CeEEEEeCCCcEEEEeCC
Q 042844 169 LAGEKIVKVSFGW---------------GHALAQTEDGKLFGWGYS 199 (372)
Q Consensus 169 ~~~~~i~~I~~g~---------------~~~~~lt~~g~vy~wG~n 199 (372)
.....|..++... ...+.-..+|.|+.|-..
T Consensus 143 ~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~ 188 (753)
T 3jro_A 143 AHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYN 188 (753)
T ss_dssp CCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEE
T ss_pred cCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEecc
Confidence 1123466666543 456666788999999653
No 29
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=82.05 E-value=24 Score=30.45 Aligned_cols=150 Identities=9% Similarity=0.052 Sum_probs=78.5
Q ss_pred eEEEEeeCCCcEEEEeCCCCCccCCCCCCCCCCCCccceeecCCCCCCeEEEecC--CC-ceEEEecCCcEEEEeC-CCC
Q 042844 18 RIFMRSASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAG--HY-HSLAVTNNGAVWAWGR-NNE 93 (372)
Q Consensus 18 ~~~~~l~~~g~vy~wG~n~~gqLG~~~~~~~~~~~~~~p~~i~~~~~~i~~I~~G--~~-h~~~lt~~G~v~~~G~-n~~ 93 (372)
..++.-..+|.|++|-..... ....+..+......|..++.. .. ..++-..||.|+.|-. ..
T Consensus 24 ~~l~~~~~d~~v~iw~~~~~~-------------~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~- 89 (342)
T 1yfq_A 24 SLLLITSWDGSLTVYKFDIQA-------------KNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGS- 89 (342)
T ss_dssp TEEEEEETTSEEEEEEEETTT-------------TEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSS-
T ss_pred CEEEEEcCCCeEEEEEeCCCC-------------ccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEEeccC-
Confidence 455666678888888653211 011122222233466666654 33 4556678899999965 22
Q ss_pred CCCcCCCCCCCCccCCCceeec-CCceeEEEEeec-CcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccccceEecccCC
Q 042844 94 VQLGRGALESRATWNDPKRVEG-LDQVNVCAAFAS-GVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAG 171 (372)
Q Consensus 94 gqlg~~~~~~~~~~~~p~~i~~-~~~~~i~~i~~g-~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~p~~i~~~~~ 171 (372)
+++ ..+.. .....|..++.. ....+.-+.+|.|+.|-...... . .......+..... ..
T Consensus 90 ~~~--------------~~~~~~~~~~~v~~l~~~~~~~l~s~~~d~~i~iwd~~~~~~---~-~~~~~~~~~~~~~-~~ 150 (342)
T 1yfq_A 90 PSF--------------QALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGD---G-VIAVKNLNSNNTK-VK 150 (342)
T ss_dssp SSE--------------EECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTT---B-CEEEEESCSSSSS-SC
T ss_pred Cce--------------EeccccCCCCceEEEEeCCCCEEEEEcCCCeEEEEccccccc---c-cccccCCeeeEEe-eC
Confidence 111 11111 011133333332 56667778899999995321000 0 0000000000001 22
Q ss_pred CcEEEEEecCCeEEEEeCCCcEEEEeCCC
Q 042844 172 EKIVKVSFGWGHALAQTEDGKLFGWGYSA 200 (372)
Q Consensus 172 ~~i~~I~~g~~~~~~lt~~g~vy~wG~n~ 200 (372)
..|..++...+..++-+.+|.|+.|-...
T Consensus 151 ~~v~~~~~~~~~l~~~~~d~~i~i~d~~~ 179 (342)
T 1yfq_A 151 NKIFTMDTNSSRLIVGMNNSQVQWFRLPL 179 (342)
T ss_dssp CCEEEEEECSSEEEEEESTTEEEEEESSC
T ss_pred CceEEEEecCCcEEEEeCCCeEEEEECCc
Confidence 46888888888877888999999998653
No 30
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=80.87 E-value=17 Score=31.29 Aligned_cols=17 Identities=24% Similarity=0.362 Sum_probs=12.0
Q ss_pred CCeEEEEeCCCcEEEEeC
Q 042844 181 WGHALAQTEDGKLFGWGY 198 (372)
Q Consensus 181 ~~~~~~lt~~g~vy~wG~ 198 (372)
..|++++. +++||++|-
T Consensus 151 ~~~~~~~~-~~~iyv~GG 167 (301)
T 2vpj_A 151 EGAGLVVA-SGVIYCLGG 167 (301)
T ss_dssp BSCEEEEE-TTEEEEECC
T ss_pred ccceEEEE-CCEEEEECC
Confidence 34666555 779999984
No 31
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=80.56 E-value=28 Score=30.22 Aligned_cols=64 Identities=17% Similarity=0.056 Sum_probs=35.3
Q ss_pred EeecCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccccceEecccCCCcEEEEEecC--CeEEEEeCCCcEEEEeCC
Q 042844 124 AFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGW--GHALAQTEDGKLFGWGYS 199 (372)
Q Consensus 124 i~~g~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~p~~i~~~~~~~i~~I~~g~--~~~~~lt~~g~vy~wG~n 199 (372)
++......++-+.+|.|+.|-.... ..+..........|..++... ...++-+.+|.|+.|-..
T Consensus 183 ~~~~~~~l~~~~~dg~i~i~d~~~~------------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~ 248 (369)
T 3zwl_B 183 WSTKGKYIIAGHKDGKISKYDVSNN------------YEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVS 248 (369)
T ss_dssp ECGGGCEEEEEETTSEEEEEETTTT------------TEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred EcCCCCEEEEEcCCCEEEEEECCCC------------cEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECC
Confidence 3334445666678899999964221 011111111224566666643 345555678888888753
No 32
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=80.34 E-value=19 Score=33.00 Aligned_cols=143 Identities=10% Similarity=0.079 Sum_probs=77.4
Q ss_pred eEEEEeeCCCcEEEEeCCCCCccCCCCCCC----CCCCCccce-eecCCCCCCeEEEecCCCceEEEecCCcEEEEeCCC
Q 042844 18 RIFMRSASGTAVVSFGDGSQGALGLPTSLT----GVGGDAYEP-TRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNN 92 (372)
Q Consensus 18 ~~~~~l~~~g~vy~wG~n~~gqLG~~~~~~----~~~~~~~~p-~~i~~~~~~i~~I~~G~~h~~~lt~~G~v~~~G~n~ 92 (372)
-..+++++...+++-|.+..-.+.....-. +.... +.| ..++ ++. |..+++ +...+++..+|.|..|-...
T Consensus 40 ~nlLais~~~gll~a~~~~~l~v~~~~~l~~~~~~~~~~-~~~~~~~~-lp~-V~~l~f-d~~~L~v~~~~~l~v~dv~s 115 (388)
T 1xip_A 40 LQNLDISNSKSLFVAASGSKAVVGELQLLRDHITSDSTP-LTFKWEKE-IPD-VIFVCF-HGDQVLVSTRNALYSLDLEE 115 (388)
T ss_dssp CBCEEEETTTTEEEEEETTEEEEEEHHHHHHHHHSSSCC-CCCSEEEE-CTT-EEEEEE-ETTEEEEEESSEEEEEESSS
T ss_pred ccEEEEcCCCCEEEEeCCCEEEEEEhhHhhhhhcccccc-ccceEEee-CCC-eeEEEE-CCCEEEEEcCCcEEEEEchh
Confidence 344555566666666665433321110000 00011 445 3333 656 999999 77888888999999997544
Q ss_pred CCCCcCCCCCCCCccCCCceeecCCceeEEEEeecCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccccceEecccCCC
Q 042844 93 EVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGE 172 (372)
Q Consensus 93 ~gqlg~~~~~~~~~~~~p~~i~~~~~~~i~~i~~g~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~p~~i~~~~~~ 172 (372)
..+.. .++.++ ..+.++.+-....++++.+|.|++|--... + ..+ +. .
T Consensus 116 l~~~~--------------~~~~~~-~~v~~i~~~~p~~av~~~dG~L~v~dl~~~-~----------~~~--~~----~ 163 (388)
T 1xip_A 116 LSEFR--------------TVTSFE-KPVFQLKNVNNTLVILNSVNDLSALDLRTK-S----------TKQ--LA----Q 163 (388)
T ss_dssp TTCEE--------------EEEECS-SCEEEEEECSSEEEEEETTSEEEEEETTTC-C----------EEE--EE----E
T ss_pred hhccC--------------ccceee-cceeeEEecCCCEEEEECCCCEEEEEccCC-c----------ccc--cc----C
Confidence 32111 111111 234455555555888899999999954211 1 011 11 2
Q ss_pred cEEEEEecCCeEEEEeCCCcEEEE
Q 042844 173 KIVKVSFGWGHALAQTEDGKLFGW 196 (372)
Q Consensus 173 ~i~~I~~g~~~~~~lt~~g~vy~w 196 (372)
.|..|+....-.++...+|++..|
T Consensus 164 ~Vs~v~WSpkG~~vg~~dg~i~~~ 187 (388)
T 1xip_A 164 NVTSFDVTNSQLAVLLKDRSFQSF 187 (388)
T ss_dssp SEEEEEECSSEEEEEETTSCEEEE
T ss_pred CceEEEEcCCceEEEEcCCcEEEE
Confidence 466666655555566666766666
No 33
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=80.16 E-value=35 Score=31.09 Aligned_cols=159 Identities=15% Similarity=0.185 Sum_probs=78.0
Q ss_pred eeEEEEeeCCCcEEEEeCCCCCccCCCCCCCCCCCCcccee-ecCCCCCCeEEEecCCC---ceEEEecCCcEEEEeCCC
Q 042844 17 SRIFMRSASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPT-RVPGLPSDVTSVSAGHY---HSLAVTNNGAVWAWGRNN 92 (372)
Q Consensus 17 ~~~~~~l~~~g~vy~wG~n~~gqLG~~~~~~~~~~~~~~p~-~i~~~~~~i~~I~~G~~---h~~~lt~~G~v~~~G~n~ 92 (372)
..+++.-..+|.|++|-........... ....|. .+..-...|..++.... +.+.-..||.|..|-...
T Consensus 141 ~~~lat~~~dg~V~vwd~~~~~~~~~~~-------~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~ 213 (430)
T 2xyi_A 141 ACVIATKTPSSDVLVFDYTKHPSKPEPS-------GECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINA 213 (430)
T ss_dssp EEEEEEECSSSCEEEEEGGGSCSSCCTT-------CCCCCSEEEECCSSCCCCEEECTTSTTEEEEECTTSCEEEEETTS
T ss_pred CcEEEEECCCCcEEEEECCCcccccCcc-------ccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCCCeEEEEeCCC
Confidence 4566666789999999875421110000 011111 11222234555554432 445556789999998654
Q ss_pred CCCCcCCCCCCCCccCCCceeecCCceeEEEEee---cCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccccceEeccc
Q 042844 93 EVQLGRGALESRATWNDPKRVEGLDQVNVCAAFA---SGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEAL 169 (372)
Q Consensus 93 ~gqlg~~~~~~~~~~~~p~~i~~~~~~~i~~i~~---g~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~p~~i~~~ 169 (372)
...... ...+..........|.+++. +....+..+.+|.|+.|-...... ..+......
T Consensus 214 ~~~~~~--------~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~----------~~~~~~~~~ 275 (430)
T 2xyi_A 214 TPKEHR--------VIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNT----------SKPSHTVDA 275 (430)
T ss_dssp CCBGGG--------EEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCS----------SSCSEEEEC
T ss_pred CCCCCc--------eeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCC----------CcceeEeec
Confidence 221100 00111111111223555554 344556667899999997543210 011111111
Q ss_pred CCCcEEEEEecCC---eEEEEeCCCcEEEEeCCC
Q 042844 170 AGEKIVKVSFGWG---HALAQTEDGKLFGWGYSA 200 (372)
Q Consensus 170 ~~~~i~~I~~g~~---~~~~lt~~g~vy~wG~n~ 200 (372)
....|..|+...+ ..+.-..+|.|..|-...
T Consensus 276 ~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~ 309 (430)
T 2xyi_A 276 HTAEVNCLSFNPYSEFILATGSADKTVALWDLRN 309 (430)
T ss_dssp CSSCEEEEEECSSCTTEEEEEETTSEEEEEETTC
T ss_pred CCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCC
Confidence 2245777776532 344557788899998653
No 34
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=79.15 E-value=53 Score=32.56 Aligned_cols=109 Identities=10% Similarity=0.039 Sum_probs=56.7
Q ss_pred CCeEEEecCC--CceEEEecCCcEEEEeCCCCCCCcCCCCCCCCccCCCceeecCCceeEEEEee--cCcEEEEEeCCCc
Q 042844 64 SDVTSVSAGH--YHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFA--SGVVSSAIGDDGS 139 (372)
Q Consensus 64 ~~i~~I~~G~--~h~~~lt~~G~v~~~G~n~~gqlg~~~~~~~~~~~~p~~i~~~~~~~i~~i~~--g~~~~~~lt~~g~ 139 (372)
..|..++... ...++-..||.|..|-......+ ..+..- ...|..++. .....+.-+.+|.
T Consensus 56 ~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~--------------~~~~~~-~~~v~~~~~s~~~~~l~~~~~dg~ 120 (814)
T 3mkq_A 56 TPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKV--------------VDFEAH-PDYIRSIAVHPTKPYVLSGSDDLT 120 (814)
T ss_dssp SCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEE--------------EEEECC-SSCEEEEEECSSSSEEEEEETTSE
T ss_pred CcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEE--------------EEEecC-CCCEEEEEEeCCCCEEEEEcCCCE
Confidence 4566555443 34455567899999975432111 111111 112333333 3344556677888
Q ss_pred EEEEeCCCCCCCCCCCCCcccccceEecccCCCcEEEEEecC---CeEEEEeCCCcEEEEeCC
Q 042844 140 LWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGW---GHALAQTEDGKLFGWGYS 199 (372)
Q Consensus 140 v~~~G~n~~gqlg~~~~~~~~~~p~~i~~~~~~~i~~I~~g~---~~~~~lt~~g~vy~wG~n 199 (372)
|..|-.... ......+. .....|..++... ...+.-+.+|.|+.|-..
T Consensus 121 i~vw~~~~~-----------~~~~~~~~-~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~ 171 (814)
T 3mkq_A 121 VKLWNWENN-----------WALEQTFE-GHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLG 171 (814)
T ss_dssp EEEEEGGGT-----------SEEEEEEE-CCSSCEEEEEEETTEEEEEEEEETTSEEEEEETT
T ss_pred EEEEECCCC-----------ceEEEEEc-CCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECC
Confidence 888853210 01111111 1224577777643 455666788999999753
No 35
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=78.11 E-value=32 Score=31.43 Aligned_cols=36 Identities=11% Similarity=0.242 Sum_probs=24.8
Q ss_pred cceEecccCCCcEEEEEecCCeEEEEeCCCcEEEEeCCC
Q 042844 162 VPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSA 200 (372)
Q Consensus 162 ~p~~i~~~~~~~i~~I~~g~~~~~~lt~~g~vy~wG~n~ 200 (372)
.|.....++. |.++++ ....+++.+++.|..|=...
T Consensus 80 ~~~~~~~lp~--V~~l~f-d~~~L~v~~~~~l~v~dv~s 115 (388)
T 1xip_A 80 TFKWEKEIPD--VIFVCF-HGDQVLVSTRNALYSLDLEE 115 (388)
T ss_dssp CCSEEEECTT--EEEEEE-ETTEEEEEESSEEEEEESSS
T ss_pred cceEEeeCCC--eeEEEE-CCCEEEEEcCCcEEEEEchh
Confidence 4433333444 999999 66777777888899987643
No 36
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=77.49 E-value=35 Score=29.58 Aligned_cols=153 Identities=12% Similarity=0.120 Sum_probs=78.1
Q ss_pred eEEEEeeCCCcEEEEeCCCCCccCCCCCCCCCCCCccceeecCCCCCCeEEEecCC---CceEEEecCCcEEEEeCCCCC
Q 042844 18 RIFMRSASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGH---YHSLAVTNNGAVWAWGRNNEV 94 (372)
Q Consensus 18 ~~~~~l~~~g~vy~wG~n~~gqLG~~~~~~~~~~~~~~p~~i~~~~~~i~~I~~G~---~h~~~lt~~G~v~~~G~n~~g 94 (372)
.+++.-..+|.|++|-.... + ....+......|..++... ...+.-..||.|+.|-.....
T Consensus 86 ~~l~~~~~dg~i~v~d~~~~-~---------------~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~ 149 (366)
T 3k26_A 86 PLLAVAGSRGIIRIINPITM-Q---------------CIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDT 149 (366)
T ss_dssp EEEEEEETTCEEEEECTTTC-C---------------EEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTE
T ss_pred CEEEEecCCCEEEEEEchhc-e---------------EeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCe
Confidence 35666667888888854321 1 1112222335688887754 444555679999999753211
Q ss_pred CCcCCCCCCCCccCCCceee--cCCceeEEEEeec--CcEEEEEeCCCcEEEEeCCCCCCCC-------CCCCC------
Q 042844 95 QLGRGALESRATWNDPKRVE--GLDQVNVCAAFAS--GVVSSAIGDDGSLWVWGKSKRGQLG-------LGKDI------ 157 (372)
Q Consensus 95 qlg~~~~~~~~~~~~p~~i~--~~~~~~i~~i~~g--~~~~~~lt~~g~v~~~G~n~~gqlg-------~~~~~------ 157 (372)
.+ ..+. ......|..+... ....+.-..||.|+.|-....-.+. .....
T Consensus 150 ~~--------------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (366)
T 3k26_A 150 LV--------------AIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFI 215 (366)
T ss_dssp EE--------------EEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCC
T ss_pred EE--------------EEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCccccc
Confidence 10 0110 0112245555443 4456666788999999653210000 00000
Q ss_pred -cccccce-EecccCCCcEEEEEecCCeEEEEeCCCcEEEEeCCC
Q 042844 158 -TEAIVPS-RVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSA 200 (372)
Q Consensus 158 -~~~~~p~-~i~~~~~~~i~~I~~g~~~~~~lt~~g~vy~wG~n~ 200 (372)
.....|. .........|..++......+.-+.+|.|..|-...
T Consensus 216 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~~wd~~~ 260 (366)
T 3k26_A 216 SQKIHFPDFSTRDIHRNYVDCVRWLGDLILSKSCENAIVCWKPGK 260 (366)
T ss_dssp CEEECCCSEEECSSCSSCCCEEEEETTEEEEECSSSEEEEEEESS
T ss_pred ceeeccCccccccCCcceEEEEEEcCCEEEEEecCCEEEEEeCCC
Confidence 0000000 000112345666666677777788899999998643
No 37
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=77.15 E-value=50 Score=31.21 Aligned_cols=141 Identities=7% Similarity=0.008 Sum_probs=73.2
Q ss_pred eeEEEEeeC-CCcEEEEeCCCCCccCCCCCCCCCCCCccceeecCCCCCCeEEEecCC--CceEEEecCCcEEEEeCCCC
Q 042844 17 SRIFMRSAS-GTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGH--YHSLAVTNNGAVWAWGRNNE 93 (372)
Q Consensus 17 ~~~~~~l~~-~g~vy~wG~n~~gqLG~~~~~~~~~~~~~~p~~i~~~~~~i~~I~~G~--~h~~~lt~~G~v~~~G~n~~ 93 (372)
.+.++.-.. ++.|+.|-.... + ..+..+......|..++... .+.+.-..||.|+.|-....
T Consensus 456 ~~~l~~~~~~d~~i~~~~~~~~-~--------------~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~ 520 (615)
T 1pgu_A 456 QNYVAVGLEEGNTIQVFKLSDL-E--------------VSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSR 520 (615)
T ss_dssp SSEEEEEETTTSCEEEEETTEE-E--------------EEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT
T ss_pred CCEEEEeecCCCeEEEEECCCc-c--------------ccccccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCCC
Confidence 444555555 788888865321 1 11122222334677777643 45555668899999975432
Q ss_pred CCCcCCCCCCCCccCCCceeecCCceeEEEEee------------cCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccc
Q 042844 94 VQLGRGALESRATWNDPKRVEGLDQVNVCAAFA------------SGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAI 161 (372)
Q Consensus 94 gqlg~~~~~~~~~~~~p~~i~~~~~~~i~~i~~------------g~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~ 161 (372)
..+.. +.......|..++. .....+.-+.||.|+.|-....++
T Consensus 521 ~~~~~--------------~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~----------- 575 (615)
T 1pgu_A 521 EVKTS--------------RWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMK----------- 575 (615)
T ss_dssp EEEEC--------------CSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTC-----------
T ss_pred cceeE--------------eecCCCCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCce-----------
Confidence 21111 01001123444444 345566667899999997533211
Q ss_pred cceEecccCCCcEEEEEecCCe-EEEEeCCCcEEEEeC
Q 042844 162 VPSRVEALAGEKIVKVSFGWGH-ALAQTEDGKLFGWGY 198 (372)
Q Consensus 162 ~p~~i~~~~~~~i~~I~~g~~~-~~~lt~~g~vy~wG~ 198 (372)
+......-...|..++...+. .+....+|.|+.|-.
T Consensus 576 -~~~~~~~h~~~v~~l~~s~~~~l~s~~~d~~v~iw~~ 612 (615)
T 1pgu_A 576 -IIKALNAHKDGVNNLLWETPSTLVSSGADACIKRWNV 612 (615)
T ss_dssp -CEEETTSSTTCEEEEEEEETTEEEEEETTSCEEEEEE
T ss_pred -echhhhcCccceEEEEEcCCCCeEEecCCceEEEEee
Confidence 111111112356666554333 555577888999864
No 38
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=76.26 E-value=34 Score=28.86 Aligned_cols=106 Identities=12% Similarity=0.108 Sum_probs=59.3
Q ss_pred CCCeEEEecCCCceEEEecCCcEEEEeCCCCCCCcCCCCCCCCccCCCceeecCCceeEEEEee---cCcEEEEEeCCCc
Q 042844 63 PSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFA---SGVVSSAIGDDGS 139 (372)
Q Consensus 63 ~~~i~~I~~G~~h~~~lt~~G~v~~~G~n~~gqlg~~~~~~~~~~~~p~~i~~~~~~~i~~i~~---g~~~~~~lt~~g~ 139 (372)
...|..++......+.-..||.|+.|-.. + ....+.. ....+..+.. .....+.-+.+|.
T Consensus 104 ~~~i~~~~~~~~~l~~~~~d~~i~~~d~~---~-------------~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~d~~ 166 (313)
T 3odt_A 104 QGNVCSLSFQDGVVISGSWDKTAKVWKEG---S-------------LVYNLQA-HNASVWDAKVVSFSENKFLTASADKT 166 (313)
T ss_dssp SSCEEEEEEETTEEEEEETTSEEEEEETT---E-------------EEEEEEC-CSSCEEEEEEEETTTTEEEEEETTSC
T ss_pred ccCEEEEEecCCEEEEEeCCCCEEEEcCC---c-------------EEEeccc-CCCceeEEEEccCCCCEEEEEECCCC
Confidence 35688888877777778889999999510 0 0001111 1123333332 4556677788899
Q ss_pred EEEEeCCCCCCCCCCCCCcccccceEecccCCCcEEEEEecCC-eEEEEeCCCcEEEEeCC
Q 042844 140 LWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWG-HALAQTEDGKLFGWGYS 199 (372)
Q Consensus 140 v~~~G~n~~gqlg~~~~~~~~~~p~~i~~~~~~~i~~I~~g~~-~~~~lt~~g~vy~wG~n 199 (372)
|+.|-.. .....+.......|..++...+ ..++-..+|.|+.|-..
T Consensus 167 i~i~d~~--------------~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~dg~i~i~d~~ 213 (313)
T 3odt_A 167 IKLWQND--------------KVIKTFSGIHNDVVRHLAVVDDGHFISCSNDGLIKLVDMH 213 (313)
T ss_dssp EEEEETT--------------EEEEEECSSCSSCEEEEEEEETTEEEEEETTSEEEEEETT
T ss_pred EEEEecC--------------ceEEEEeccCcccEEEEEEcCCCeEEEccCCCeEEEEECC
Confidence 9999411 0011111112234555555322 36666788899999764
No 39
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=76.26 E-value=40 Score=29.67 Aligned_cols=122 Identities=12% Similarity=0.099 Sum_probs=64.8
Q ss_pred CCceEEEecCCcEEEEeCCCCCCCcCCCCCCCCccCCCceeecCCceeEEEEeecCcEEEEEeCCCcEEEEeCCCCCCCC
Q 042844 73 HYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLG 152 (372)
Q Consensus 73 ~~h~~~lt~~G~v~~~G~n~~gqlg~~~~~~~~~~~~p~~i~~~~~~~i~~i~~g~~~~~~lt~~g~v~~~G~n~~gqlg 152 (372)
....+++|.+|.+-..-...+.....+... ..-..+..-+...-...+.+..+.+++|+.|++|.+-...--..+
T Consensus 8 e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g-----~~~~~lke~D~l~~~~~~~~~~~ll~~T~~G~~~~~~~~~ip~~~ 82 (312)
T 1suu_A 8 ENIVVMLTKKGFLKRLSQNEYKLQGTGGKG-----LSSFDLNDGDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSS 82 (312)
T ss_dssp CEEEEEEETTCBEEEEEGGGSCBCCSSCCC-----EECCCCCTTCCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCC--
T ss_pred CCEEEEEeCCCEEEEeEHHHhhccccCCCC-----ceecccCCCCEEEEEEEECCCCEEEEEECCCeEEEEEHHHCCCCC
Confidence 445788999998876654433222111000 000001111222334455667789999999999988653221111
Q ss_pred CCCCCcccccceEecccCCCcEEEEEec-----CCeEEEEeCCCcEEEEeCCCC
Q 042844 153 LGKDITEAIVPSRVEALAGEKIVKVSFG-----WGHALAQTEDGKLFGWGYSAD 201 (372)
Q Consensus 153 ~~~~~~~~~~p~~i~~~~~~~i~~I~~g-----~~~~~~lt~~g~vy~wG~n~~ 201 (372)
.... -......+...++++|+.+... ..+.+++|++|.++-.-...+
T Consensus 83 r~~~--G~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~ 134 (312)
T 1suu_A 83 RASK--GQNISELINLGDQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDF 134 (312)
T ss_dssp -------CBGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGG
T ss_pred ccCC--CcChhhccCCCCCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHh
Confidence 1000 0011122333345677777654 456889999999998876443
No 40
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=75.82 E-value=44 Score=29.88 Aligned_cols=154 Identities=14% Similarity=0.136 Sum_probs=79.7
Q ss_pred eeeeeeEEEEe---eCCCcEEEEeCCCCCccCCCCCCCCCCCCccceeecCCCCCCeEEEecCC---CceEEEecCCcEE
Q 042844 13 NVLTSRIFMRS---ASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGH---YHSLAVTNNGAVW 86 (372)
Q Consensus 13 ~~~~~~~~~~l---~~~g~vy~wG~n~~gqLG~~~~~~~~~~~~~~p~~i~~~~~~i~~I~~G~---~h~~~lt~~G~v~ 86 (372)
+++......++ ..+|.|++|-....+++.. ..+ .+..-...|..++... ...+.-..||.|.
T Consensus 40 ~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~-----------~~~-~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~ 107 (402)
T 2aq5_A 40 CAVNPKFMALICEASGGGAFLVLPLGKTGRVDK-----------NVP-LVCGHTAPVLDIAWCPHNDNVIASGSEDCTVM 107 (402)
T ss_dssp EEECSSEEEEEBCCSSSCCEEEEETTCCEECCT-----------TCC-CBCCCSSCEEEEEECTTCTTEEEEEETTSEEE
T ss_pred EEECCCeEEEEEEEcCCCEEEEEECccCCCCCC-----------CCc-eEecCCCCEEEEEeCCCCCCEEEEEeCCCeEE
Confidence 33444444443 5689999997765544311 011 1222234677777753 3444456789999
Q ss_pred EEeCCCCCCCcCCCCCCCCccCCCc-eeecCCceeEEEEeecC---cEEEEEeCCCcEEEEeCCCCCCCCCCCCCccccc
Q 042844 87 AWGRNNEVQLGRGALESRATWNDPK-RVEGLDQVNVCAAFASG---VVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIV 162 (372)
Q Consensus 87 ~~G~n~~gqlg~~~~~~~~~~~~p~-~i~~~~~~~i~~i~~g~---~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~ 162 (372)
.|-....+... ....|. .+.. ....|..++... ...+.-+.||.|+.|-.... ..
T Consensus 108 vw~~~~~~~~~--------~~~~~~~~~~~-h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~------------~~ 166 (402)
T 2aq5_A 108 VWEIPDGGLVL--------PLREPVITLEG-HTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTG------------AA 166 (402)
T ss_dssp EEECCTTCCSS--------CBCSCSEEEEC-CSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTT------------EE
T ss_pred EEEccCCCCcc--------ccCCceEEecC-CCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCC------------Cc
Confidence 99755432111 001121 1221 122455554443 34555678899999964221 01
Q ss_pred ceEec-ccCCCcEEEEEec--CCeEEEEeCCCcEEEEeCC
Q 042844 163 PSRVE-ALAGEKIVKVSFG--WGHALAQTEDGKLFGWGYS 199 (372)
Q Consensus 163 p~~i~-~~~~~~i~~I~~g--~~~~~~lt~~g~vy~wG~n 199 (372)
...+. ......|..++.. ....+.-..+|.|+.|-..
T Consensus 167 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~ 206 (402)
T 2aq5_A 167 VLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPR 206 (402)
T ss_dssp EEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETT
T ss_pred cEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCC
Confidence 11110 1123457777664 3455566778889999754
No 41
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=75.34 E-value=86 Score=33.02 Aligned_cols=66 Identities=24% Similarity=0.377 Sum_probs=33.3
Q ss_pred CcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccccceEec---ccCCCcEEEEEecCCeEEEEeCCCcEEEEeCCC
Q 042844 128 GVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVE---ALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSA 200 (372)
Q Consensus 128 ~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~p~~i~---~~~~~~i~~I~~g~~~~~~lt~~g~vy~wG~n~ 200 (372)
....+.-+.||.|+.|-......+.. ..|.... ......|..++...+...+++.+|.|..|-...
T Consensus 1139 g~~lat~~~dg~i~vwd~~~~~~~~~-------~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~s~~g~v~vwd~~~ 1207 (1249)
T 3sfz_A 1139 GILLATGDDNGEIRIWNVSDGQLLHS-------CAPISVEEGTATHGGWVTDVCFSPDSKTLVSAGGYLKWWNVAT 1207 (1249)
T ss_dssp SSEEEEEETTSCCCEEESSSSCCCCC-------CCCCC-------CCSCCCEEEECTTSSCEEEESSSEEEBCSSS
T ss_pred CCEEEEEeCCCEEEEEECCCCceEEE-------eccccccccccccCceEEEEEECCCCCEEEECCCeEEEEECCC
Confidence 33455556788888886533211110 0111100 111234667776666555555568888887543
No 42
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=72.99 E-value=13 Score=36.61 Aligned_cols=57 Identities=16% Similarity=0.179 Sum_probs=33.2
Q ss_pred cEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccccceEecccCCCcEEEEE----ecCCeEEEEeCCCcEEEEeC
Q 042844 129 VVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVS----FGWGHALAQTEDGKLFGWGY 198 (372)
Q Consensus 129 ~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~p~~i~~~~~~~i~~I~----~g~~~~~~lt~~g~vy~wG~ 198 (372)
.+++++..+|+||++|-.... . .. +.+....+...+. .-..|++++..+|+||++|-
T Consensus 245 ~~~~~~~~~g~lyv~GG~~~~------~-v~------~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG 305 (656)
T 1k3i_A 245 CPGISMDGNGQIVVTGGNDAK------K-TS------LYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGG 305 (656)
T ss_dssp SCEEEECTTSCEEEECSSSTT------C-EE------EEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECC
T ss_pred cccccCCCCCCEEEeCCCCCC------c-eE------EecCcCCceeECCCCCccccccceEEecCCeEEEEeC
Confidence 345677889999999964321 0 11 1111111222221 23568888888999999985
No 43
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=72.43 E-value=45 Score=28.48 Aligned_cols=16 Identities=19% Similarity=0.316 Sum_probs=11.5
Q ss_pred CeEEEEeCCCcEEEEeC
Q 042844 182 GHALAQTEDGKLFGWGY 198 (372)
Q Consensus 182 ~~~~~lt~~g~vy~wG~ 198 (372)
.|++++. +++||++|-
T Consensus 199 ~~~~~~~-~~~i~v~GG 214 (301)
T 2vpj_A 199 GAGVALL-NDHIYVVGG 214 (301)
T ss_dssp SCEEEEE-TTEEEEECC
T ss_pred cceEEEE-CCEEEEEeC
Confidence 4565555 679999984
No 44
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=71.74 E-value=47 Score=28.36 Aligned_cols=79 Identities=13% Similarity=0.136 Sum_probs=42.1
Q ss_pred CccEEEEEecCCeeEEEecC-CC-EEEEeCCCCCccCCCCCCCcccce---eeccccEEEec--C---------CCceEE
Q 042844 263 GVEVVDIACGFDHSLVLGRN-GV-LLSCGSNVYGQLGREKQDMGMFPV---DINFHPVSISS--G---------LGHSLA 326 (372)
Q Consensus 263 ~~~i~~I~~G~~h~~alt~~-G~-vy~wG~n~~gqlG~~~~~~~~~P~---~v~~~i~~ia~--G---------~~~s~~ 326 (372)
..++.-........++++.+ |+ +|.++.+... +. ....|. .++..-+-|+. | ....+.
T Consensus 175 ~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~--~~----~l~~~~~~~~~~~G~i~v~~~~g~~~~~~~~~~~~~~~ 248 (276)
T 3no2_A 175 NGDCLVACGDAHCFVQLNLESNRIVRRVNANDIE--GV----QLFFVAQLFPLQNGGLYICNWQGHDREAGKGKHPQLVE 248 (276)
T ss_dssp TSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSB--SC----CCSEEEEEEECTTSCEEEEEECTTCTTGGGSCCCSEEE
T ss_pred CCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCC--Cc----cccccccceEcCCCCEEEEeccCccccccccCCceEEE
Confidence 34444333444457777776 75 5666643210 00 111222 22334444555 2 335788
Q ss_pred EEeeccccccCCCccEEEecCCCCCCccCCC
Q 042844 327 ICEVRSSNVTGGARGIVSWGWNRSSQLGRMG 357 (372)
Q Consensus 327 l~~~~~~~~~~~~g~v~~wG~n~~gqLG~~~ 357 (372)
++. +|++ .|=.+.....|..+
T Consensus 249 ~~~---------~g~~-~W~~~~~~~~~~~~ 269 (276)
T 3no2_A 249 IDS---------EGKV-VWQLNDKVKFGMIS 269 (276)
T ss_dssp ECT---------TSBE-EEEECCTTTSCCCC
T ss_pred ECC---------CCCE-EEEecCccccccee
Confidence 888 8887 67777777777655
No 45
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=71.28 E-value=57 Score=29.16 Aligned_cols=139 Identities=15% Similarity=0.197 Sum_probs=72.6
Q ss_pred eEEEEeeCCCcEEEEeCCCCCccCCCCCCCCCCCCccceeecCCCCCCeEEEecCCCceEEEecCCcEEEEeCCCCCCCc
Q 042844 18 RIFMRSASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLG 97 (372)
Q Consensus 18 ~~~~~l~~~g~vy~wG~n~~gqLG~~~~~~~~~~~~~~p~~i~~~~~~i~~I~~G~~h~~~lt~~G~v~~~G~n~~gqlg 97 (372)
.++++-..+|.|++|-.... .....+......|..++......+.-..||.|+.|-....+.
T Consensus 147 ~~l~~~~~dg~i~iwd~~~~----------------~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-- 208 (401)
T 4aez_A 147 SFLSVGLGNGLVDIYDVESQ----------------TKLRTMAGHQARVGCLSWNRHVLSSGSRSGAIHHHDVRIANH-- 208 (401)
T ss_dssp SEEEEEETTSCEEEEETTTC----------------CEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSC--
T ss_pred CEEEEECCCCeEEEEECcCC----------------eEEEEecCCCCceEEEEECCCEEEEEcCCCCEEEEecccCcc--
Confidence 44555556777777754221 111222233457888888777777778899999997542111
Q ss_pred CCCCCCCCccCCCceeecCCceeEEEEee--cCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccccceEecccCCCcEE
Q 042844 98 RGALESRATWNDPKRVEGLDQVNVCAAFA--SGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIV 175 (372)
Q Consensus 98 ~~~~~~~~~~~~p~~i~~~~~~~i~~i~~--g~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~p~~i~~~~~~~i~ 175 (372)
....+.. ....|..+.. .....+.-+.||.|+.|-.... .+..........|.
T Consensus 209 -----------~~~~~~~-~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~-------------~~~~~~~~~~~~v~ 263 (401)
T 4aez_A 209 -----------QIGTLQG-HSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSS-------------IPKFTKTNHNAAVK 263 (401)
T ss_dssp -----------EEEEEEC-CSSCEEEEEECTTSSEEEEEETTSCEEEEETTCS-------------SEEEEECCCSSCCC
T ss_pred -----------eeeEEcC-CCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCC-------------CccEEecCCcceEE
Confidence 0111111 1123444443 3345566677899999964321 11111111123455
Q ss_pred EEEecC--CeEEEEe---CCCcEEEEeCC
Q 042844 176 KVSFGW--GHALAQT---EDGKLFGWGYS 199 (372)
Q Consensus 176 ~I~~g~--~~~~~lt---~~g~vy~wG~n 199 (372)
.++... ...++.. .+|.|+.|-..
T Consensus 264 ~~~~~p~~~~ll~~~~gs~d~~i~i~d~~ 292 (401)
T 4aez_A 264 AVAWCPWQSNLLATGGGTMDKQIHFWNAA 292 (401)
T ss_dssp EEEECTTSTTEEEEECCTTTCEEEEEETT
T ss_pred EEEECCCCCCEEEEecCCCCCEEEEEECC
Confidence 665543 2334433 48889888753
No 46
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=68.80 E-value=69 Score=29.11 Aligned_cols=156 Identities=13% Similarity=0.083 Sum_probs=82.3
Q ss_pred eeeeeeEEEEeeCCCcEEEEeCCCCCccCCCCCCCCCCCCccceeecCCCCCCeEEEecCCC-ceEEEecCCcEEEEeCC
Q 042844 13 NVLTSRIFMRSASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHY-HSLAVTNNGAVWAWGRN 91 (372)
Q Consensus 13 ~~~~~~~~~~l~~~g~vy~wG~n~~gqLG~~~~~~~~~~~~~~p~~i~~~~~~i~~I~~G~~-h~~~lt~~G~v~~~G~n 91 (372)
++.....++.-..||.|.+|-.... .....+..-...|..++.... ..+.-..||.|..|-..
T Consensus 128 ~~~~~~~l~sgs~dg~i~vwd~~~~----------------~~~~~~~~h~~~V~~l~~~~~~~l~s~s~dg~i~vwd~~ 191 (464)
T 3v7d_B 128 LQFEDNYVITGADDKMIRVYDSINK----------------KFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWDIK 191 (464)
T ss_dssp EEEETTEEEEEETTSCEEEEETTTT----------------EEEEEECCCSSCEEEEEECSTTEEEEEETTSCEEEEETT
T ss_pred EEECCCEEEEEcCCCcEEEEECCCC----------------cEEEEEeCCCcCEEEEEEcCCCEEEEEeCCCCEEEEECC
Confidence 3444556666678888888864221 111122223356777776544 44556789999999753
Q ss_pred CCCCCcCCCCCCCCccCCCceeecCCceeEEEEeec----CcEEEEEeCCCcEEEEeCCCCCCCCCCCCCc--------c
Q 042844 92 NEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFAS----GVVSSAIGDDGSLWVWGKSKRGQLGLGKDIT--------E 159 (372)
Q Consensus 92 ~~gqlg~~~~~~~~~~~~p~~i~~~~~~~i~~i~~g----~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~--------~ 159 (372)
....+ ..+.. ....|..+... ....+.-+.||.|..|-.............. .
T Consensus 192 ~~~~~--------------~~~~~-h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 256 (464)
T 3v7d_B 192 KGCCT--------------HVFEG-HNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTP 256 (464)
T ss_dssp TTEEE--------------EEECC-CSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCG
T ss_pred CCcEE--------------EEECC-CCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeecc
Confidence 21110 01111 11233333322 2456667889999999765432211100000 0
Q ss_pred cccceEecc--cCCCcEEEEEecCCeEEEEeCCCcEEEEeCC
Q 042844 160 AIVPSRVEA--LAGEKIVKVSFGWGHALAQTEDGKLFGWGYS 199 (372)
Q Consensus 160 ~~~p~~i~~--~~~~~i~~I~~g~~~~~~lt~~g~vy~wG~n 199 (372)
...|..+.. .....+..++......+.-..+|.|+.|-..
T Consensus 257 ~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~vwd~~ 298 (464)
T 3v7d_B 257 EENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVA 298 (464)
T ss_dssp GGCTTEEEEECCCSSCEEEEEEETTEEEEEETTSCEEEEETT
T ss_pred CCCeEEEEEccCccceEEEEcCCCCEEEEEeCCCeEEEEECC
Confidence 001111111 1124577777777888888999999999764
No 47
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=68.23 E-value=65 Score=28.59 Aligned_cols=125 Identities=13% Similarity=0.070 Sum_probs=69.1
Q ss_pred ecCCCceEEEecCCcEEEEeCCCCCCCcCCCCCCCCccCCC--ceeecCCceeEEEEeecC-----cEEEEEeCCCcEEE
Q 042844 70 SAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDP--KRVEGLDQVNVCAAFASG-----VVSSAIGDDGSLWV 142 (372)
Q Consensus 70 ~~G~~h~~~lt~~G~v~~~G~n~~gqlg~~~~~~~~~~~~p--~~i~~~~~~~i~~i~~g~-----~~~~~lt~~g~v~~ 142 (372)
+....+.+++|+.|++|..-...-...++.. . -.| ..++..++.+|+.+.... ...+++|++|.+.-
T Consensus 50 ~~t~d~ll~fT~~Gr~y~~~~~~lp~~~r~~---~---G~~i~~~l~l~~~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr 123 (327)
T 3uc1_A 50 CSTHDLILFFTTQGRVYRAKAYDLPEASRTA---R---GQHVANLLAFQPEERIAQVIQIRGYTDAPYLVLATRNGLVKK 123 (327)
T ss_dssp EETTSEEEEEETTSEEEEEEGGGSCBCCSSS---C---CEEHHHHTTCCTTCCEEEEEEESSTTSSSEEEEEETTSEEEE
T ss_pred eCCCCEEEEEeCCCeEEEEEHHHCcCCCccC---C---CEEHHHccCCCCCCEEEEEEEeccCCCCCEEEEEcCCCEEEE
Confidence 3445556779999999998754332221111 0 011 112222455677765553 46888999999887
Q ss_pred EeCCCCCCCCCCCCCcccccceEecccCCCcEEE--EEecCCeEEEEeCCCcEEEEeCC--CCCCCCCC
Q 042844 143 WGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVK--VSFGWGHALAQTEDGKLFGWGYS--ADGRIGNL 207 (372)
Q Consensus 143 ~G~n~~gqlg~~~~~~~~~~p~~i~~~~~~~i~~--I~~g~~~~~~lt~~g~vy~wG~n--~~gqlg~~ 207 (372)
.-...+-.-. .... .-+....++.++. ++.+.++.+++|++|++|.+-.. .--.+|+.
T Consensus 124 ~~l~~~~~~~-----r~G~--~~i~lke~D~lv~~~~~~~~d~ill~T~~G~~~rf~~~~~eip~~gr~ 185 (327)
T 3uc1_A 124 SKLTDFDSNR-----SGGI--VAVNLRDNDELVGAVLCSAGDDLLLVSANGQSIRFSATDEALRPMGRA 185 (327)
T ss_dssp EEGGGGCCCC-----SSCE--ESCBCCTTCCEEEEEEECTTCEEEEEETTSEEEEEECCTTTSCCCCTT
T ss_pred eEHHHhhccc-----cCce--EEEEECCCCEEEEEEEecCCCEEEEEECCCeEEEEECcccccCcCCcC
Confidence 7543321100 0000 0111112344443 34467789999999999999876 44444443
No 48
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=67.29 E-value=59 Score=27.82 Aligned_cols=148 Identities=7% Similarity=-0.084 Sum_probs=77.1
Q ss_pred EEEEeeCCCcEEEEeCCCCCccCCCCCCCCCCCCccceeecCC--CCCCeEEEecC-CCceEEEecCCcEEEEeCCCCCC
Q 042844 19 IFMRSASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPG--LPSDVTSVSAG-HYHSLAVTNNGAVWAWGRNNEVQ 95 (372)
Q Consensus 19 ~~~~l~~~g~vy~wG~n~~gqLG~~~~~~~~~~~~~~p~~i~~--~~~~i~~I~~G-~~h~~~lt~~G~v~~~G~n~~gq 95 (372)
.++.-..+|.|++|-.+..++ +..+.. ....|..++.. ....+.-..||.|+.|-......
T Consensus 71 ~l~~~~~dg~i~~wd~~~~~~----------------~~~~~~~~~~~~v~~l~~~~~~~l~s~~~d~~i~iwd~~~~~~ 134 (342)
T 1yfq_A 71 QIYVGTVQGEILKVDLIGSPS----------------FQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGD 134 (342)
T ss_dssp EEEEEETTSCEEEECSSSSSS----------------EEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTT
T ss_pred EEEEEcCCCeEEEEEeccCCc----------------eEeccccCCCCceEEEEeCCCCEEEEEcCCCeEEEEccccccc
Confidence 455556677777774311111 123333 33567666655 45556667899999996432100
Q ss_pred CcCCCCCCCCccCCCc-eeecCCceeEEEEeecCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccccceEecccCCCcE
Q 042844 96 LGRGALESRATWNDPK-RVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKI 174 (372)
Q Consensus 96 lg~~~~~~~~~~~~p~-~i~~~~~~~i~~i~~g~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~p~~i~~~~~~~i 174 (372)
.... ....+. .+. ....+..++......++-+.+|.|+.|-....+. .............|
T Consensus 135 ---~~~~---~~~~~~~~~~--~~~~v~~~~~~~~~l~~~~~d~~i~i~d~~~~~~----------~~~~~~~~~~~~~i 196 (342)
T 1yfq_A 135 ---GVIA---VKNLNSNNTK--VKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCED----------DNGTIEESGLKYQI 196 (342)
T ss_dssp ---BCEE---EEESCSSSSS--SCCCEEEEEECSSEEEEEESTTEEEEEESSCCTT----------CCCEEEECSCSSCE
T ss_pred ---cccc---ccCCeeeEEe--eCCceEEEEecCCcEEEEeCCCeEEEEECCcccc----------ccceeeecCCCCce
Confidence 0000 000000 011 1224666666666677778899999997533110 00111111122356
Q ss_pred EEEEecC---CeEEEEeCCCcEEEEeCCC
Q 042844 175 VKVSFGW---GHALAQTEDGKLFGWGYSA 200 (372)
Q Consensus 175 ~~I~~g~---~~~~~lt~~g~vy~wG~n~ 200 (372)
..++... ...++-+.+|.|..|-...
T Consensus 197 ~~i~~~~~~~~~l~~~~~dg~i~i~~~~~ 225 (342)
T 1yfq_A 197 RDVALLPKEQEGYACSSIDGRVAVEFFDD 225 (342)
T ss_dssp EEEEECSGGGCEEEEEETTSEEEEEECCT
T ss_pred eEEEECCCCCCEEEEEecCCcEEEEEEcC
Confidence 6666643 5666668888999887654
No 49
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=66.07 E-value=70 Score=28.21 Aligned_cols=120 Identities=15% Similarity=0.088 Sum_probs=58.6
Q ss_pred CCeEEEecCCC-ceEEEecCCcEEEEeCCCCCCCcCCCCCCCCccCCCceeecCCceeEEEEeec--CcEEEEEeCCCcE
Q 042844 64 SDVTSVSAGHY-HSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFAS--GVVSSAIGDDGSL 140 (372)
Q Consensus 64 ~~i~~I~~G~~-h~~~lt~~G~v~~~G~n~~gqlg~~~~~~~~~~~~p~~i~~~~~~~i~~i~~g--~~~~~~lt~~g~v 140 (372)
..|..++.... ..++...+|.|+.|-...... ...+. .....+..++.. ....++-+.+|.|
T Consensus 290 ~~i~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~--------------~~~~~-~~~~~i~~~~~s~~~~~l~~~~~dg~i 354 (425)
T 1r5m_A 290 QSIVSASWVGDDKVISCSMDGSVRLWSLKQNTL--------------LALSI-VDGVPIFAGRISQDGQKYAVAFMDGQV 354 (425)
T ss_dssp SCEEEEEEETTTEEEEEETTSEEEEEETTTTEE--------------EEEEE-CTTCCEEEEEECTTSSEEEEEETTSCE
T ss_pred ccEEEEEECCCCEEEEEeCCCcEEEEECCCCcE--------------eEecc-cCCccEEEEEEcCCCCEEEEEECCCeE
Confidence 45777766544 555567889999997432110 00111 112234444333 4456666788899
Q ss_pred EEEeCCCCCC-----CCCCCCCcccccceEecccCC---C-cEEEEEecCC--eEEEEeCCCcEEEEeC
Q 042844 141 WVWGKSKRGQ-----LGLGKDITEAIVPSRVEALAG---E-KIVKVSFGWG--HALAQTEDGKLFGWGY 198 (372)
Q Consensus 141 ~~~G~n~~gq-----lg~~~~~~~~~~p~~i~~~~~---~-~i~~I~~g~~--~~~~lt~~g~vy~wG~ 198 (372)
+.|-...... .+..........+..+..+.. . .|..++...+ ..++.+.+|.|+.|-.
T Consensus 355 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~ 423 (425)
T 1r5m_A 355 NVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYSLQEGSVVAI 423 (425)
T ss_dssp EEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEESSSCCEEEEC
T ss_pred EEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCCceEEEEecCceEEEEee
Confidence 9986432110 000000000001112222221 2 6777777543 4556678888888853
No 50
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=65.87 E-value=61 Score=27.45 Aligned_cols=69 Identities=10% Similarity=0.049 Sum_probs=40.6
Q ss_pred eeEEEEeeCCCcEEEEeCCCCCccCCCCCCCCCCCCccceeecCCCCCCeEEEecCCC----ceEEEecCCcEEEEeCCC
Q 042844 17 SRIFMRSASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHY----HSLAVTNNGAVWAWGRNN 92 (372)
Q Consensus 17 ~~~~~~l~~~g~vy~wG~n~~gqLG~~~~~~~~~~~~~~p~~i~~~~~~i~~I~~G~~----h~~~lt~~G~v~~~G~n~ 92 (372)
.+.++.-..||.|.+|-.......... ........+......|..++.... +.+.-..||.|+.|-...
T Consensus 71 ~~~l~s~~~dg~v~vwd~~~~~~~~~~-------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~ 143 (351)
T 3f3f_A 71 GRIIASASYDKTVKLWEEDPDQEECSG-------RRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALE 143 (351)
T ss_dssp CSEEEEEETTSCEEEEEECTTSCTTSS-------CSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSS
T ss_pred CCEEEEEcCCCeEEEEecCCCcccccc-------cCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCC
Confidence 456666778899999976542211100 011122233333456888887754 455667899999997544
No 51
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=64.47 E-value=74 Score=27.91 Aligned_cols=159 Identities=11% Similarity=0.031 Sum_probs=74.4
Q ss_pred EEEEeeCCCcEEEEeCCCCCccCCCCCCCCCCCCccceeecCCCCCCeEEEecCCCc---eEEEecCCcEEEEeCCCCCC
Q 042844 19 IFMRSASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYH---SLAVTNNGAVWAWGRNNEVQ 95 (372)
Q Consensus 19 ~~~~l~~~g~vy~wG~n~~gqLG~~~~~~~~~~~~~~p~~i~~~~~~i~~I~~G~~h---~~~lt~~G~v~~~G~n~~gq 95 (372)
.++.-..++.|+.|-.... + ....+......|..++..... .+.-..||.|+.|-......
T Consensus 158 ~~~~~~~~~~v~~~d~~~~-~---------------~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~ 221 (408)
T 4a11_B 158 LVAVGTRGPKVQLCDLKSG-S---------------CSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASG 221 (408)
T ss_dssp EEEEEESSSSEEEEESSSS-C---------------CCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSC
T ss_pred EEEEEcCCCeEEEEeCCCc-c---------------eeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCc
Confidence 5666677888888865321 1 111222233467777765443 44567899999998644321
Q ss_pred -CcCCCCCCCCccCCCceeecCCceeEEEEee--cCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccccceEecccCCC
Q 042844 96 -LGRGALESRATWNDPKRVEGLDQVNVCAAFA--SGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGE 172 (372)
Q Consensus 96 -lg~~~~~~~~~~~~p~~i~~~~~~~i~~i~~--g~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~p~~i~~~~~~ 172 (372)
+..-..........+..........|..++. .....+..+.+|.|+.|-.......-.... ..........
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~------~~~~~~~~~~ 295 (408)
T 4a11_B 222 CLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYG------KVCNNSKKGL 295 (408)
T ss_dssp CSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCC------CCCCCCSSCC
T ss_pred ccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCccceeccc------cccccccccc
Confidence 1110000000000010000111223555544 344567777899999997643221110000 0000001111
Q ss_pred cEEEEEecCCeEEEEeCCCcEEEEeCC
Q 042844 173 KIVKVSFGWGHALAQTEDGKLFGWGYS 199 (372)
Q Consensus 173 ~i~~I~~g~~~~~~lt~~g~vy~wG~n 199 (372)
.+..........++...++.|+.|-..
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~i~v~d~~ 322 (408)
T 4a11_B 296 KFTVSCGCSSEFVFVPYGSTIAVYTVY 322 (408)
T ss_dssp CCEECCSSSSCEEEEEETTEEEEEETT
T ss_pred eeEEecCCCceEEEEecCCEEEEEECc
Confidence 222222334455666778899999864
No 52
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=64.29 E-value=1.1e+02 Score=30.05 Aligned_cols=139 Identities=12% Similarity=0.134 Sum_probs=70.4
Q ss_pred eEEEEeeCCCcEEEEeCCCCCccCCCCCCCCCCCCccceeecCCCCCCeEEEecCCCc--eEEEecCCcEEEEeCCCCCC
Q 042844 18 RIFMRSASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYH--SLAVTNNGAVWAWGRNNEVQ 95 (372)
Q Consensus 18 ~~~~~l~~~g~vy~wG~n~~gqLG~~~~~~~~~~~~~~p~~i~~~~~~i~~I~~G~~h--~~~lt~~G~v~~~G~n~~gq 95 (372)
+.++.-..+|.|++|-..... ....+......|..++..... .+.-..||.|..|-......
T Consensus 68 ~~l~~~~~dg~i~vw~~~~~~----------------~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~ 131 (814)
T 3mkq_A 68 NWIIVGSDDFRIRVFNYNTGE----------------KVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWA 131 (814)
T ss_dssp TEEEEEETTSEEEEEETTTCC----------------EEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSE
T ss_pred CEEEEEeCCCeEEEEECCCCc----------------EEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCce
Confidence 445555678888888643211 111222233457777665443 44456788999986432100
Q ss_pred CcCCCCCCCCccCCCceeecCCceeEEEEeec---CcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccccceEecccCCC
Q 042844 96 LGRGALESRATWNDPKRVEGLDQVNVCAAFAS---GVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGE 172 (372)
Q Consensus 96 lg~~~~~~~~~~~~p~~i~~~~~~~i~~i~~g---~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~p~~i~~~~~~ 172 (372)
....+.. ....|..++.. ....+.-+.+|.|+.|-..... ....+......
T Consensus 132 -------------~~~~~~~-~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~------------~~~~~~~~~~~ 185 (814)
T 3mkq_A 132 -------------LEQTFEG-HEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQST------------PNFTLTTGQER 185 (814)
T ss_dssp -------------EEEEEEC-CSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSS------------CSEEEECCCTT
T ss_pred -------------EEEEEcC-CCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc------------ceeEEecCCCC
Confidence 0111111 12235555443 3345566788999999642210 01111111112
Q ss_pred cEEEEEe----cCCeEEEEeCCCcEEEEeC
Q 042844 173 KIVKVSF----GWGHALAQTEDGKLFGWGY 198 (372)
Q Consensus 173 ~i~~I~~----g~~~~~~lt~~g~vy~wG~ 198 (372)
.+..++. .....++-..+|.|+.|-.
T Consensus 186 ~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~ 215 (814)
T 3mkq_A 186 GVNYVDYYPLPDKPYMITASDDLTIKIWDY 215 (814)
T ss_dssp CCCEEEECCSTTCCEEEEECTTSEEEEEET
T ss_pred CEEEEEEEECCCCCEEEEEeCCCEEEEEEC
Confidence 3444444 3445666677888999965
No 53
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=62.13 E-value=76 Score=27.26 Aligned_cols=138 Identities=10% Similarity=0.071 Sum_probs=75.9
Q ss_pred eEEEEeeCCCcEEEEeCCCCCccCCCCCCCCCCCCccceeecCCCCCCeEEEecCCC--ceEEEecCCcEEEEeCCCCCC
Q 042844 18 RIFMRSASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHY--HSLAVTNNGAVWAWGRNNEVQ 95 (372)
Q Consensus 18 ~~~~~l~~~g~vy~wG~n~~gqLG~~~~~~~~~~~~~~p~~i~~~~~~i~~I~~G~~--h~~~lt~~G~v~~~G~n~~gq 95 (372)
+.++.-..||.|++|-....++ .....+..-...|..++.... +.+.-..||.|..|-.....
T Consensus 55 ~~l~~~~~dg~i~iw~~~~~~~--------------~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~- 119 (368)
T 3mmy_A 55 NFLIAGSWANDVRCWEVQDSGQ--------------TIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQ- 119 (368)
T ss_dssp EEEEEEETTSEEEEEEECTTSC--------------EEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTE-
T ss_pred eEEEEECCCCcEEEEEcCCCCc--------------eeEEEeccccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCC-
Confidence 4556666788888886543211 111222223356777776543 44556778999999754221
Q ss_pred CcCCCCCCCCccCCCceeecCCceeEEEEee--c--CcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccccceEecccCC
Q 042844 96 LGRGALESRATWNDPKRVEGLDQVNVCAAFA--S--GVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAG 171 (372)
Q Consensus 96 lg~~~~~~~~~~~~p~~i~~~~~~~i~~i~~--g--~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~p~~i~~~~~ 171 (372)
+..+.. ....|..+.. . ....+.-+.||.|+.|-....- .-..+.. .
T Consensus 120 --------------~~~~~~-~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~------------~~~~~~~--~ 170 (368)
T 3mmy_A 120 --------------AIQIAQ-HDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSN------------PMMVLQL--P 170 (368)
T ss_dssp --------------EEEEEE-CSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSS------------CSEEEEC--S
T ss_pred --------------ceeecc-ccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCc------------EEEEEec--C
Confidence 111111 1123455543 2 2345556778999999542210 0011111 1
Q ss_pred CcEEEEEecCCeEEEEeCCCcEEEEeCC
Q 042844 172 EKIVKVSFGWGHALAQTEDGKLFGWGYS 199 (372)
Q Consensus 172 ~~i~~I~~g~~~~~~lt~~g~vy~wG~n 199 (372)
..+..+..-....++.+.++.+..|-..
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 198 (368)
T 3mmy_A 171 ERCYCADVIYPMAVVATAERGLIVYQLE 198 (368)
T ss_dssp SCEEEEEEETTEEEEEEGGGCEEEEECS
T ss_pred CCceEEEecCCeeEEEeCCCcEEEEEec
Confidence 2466666667788888899999999864
No 54
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=62.02 E-value=1.1e+02 Score=28.87 Aligned_cols=109 Identities=13% Similarity=0.119 Sum_probs=57.2
Q ss_pred CCeEEEecCCC---ceEEEecCCcEEEEeCCCCCCCcCCCCCCCCccCCCceeecCCce---eEEEEeec---CcEEEEE
Q 042844 64 SDVTSVSAGHY---HSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQV---NVCAAFAS---GVVSSAI 134 (372)
Q Consensus 64 ~~i~~I~~G~~---h~~~lt~~G~v~~~G~n~~gqlg~~~~~~~~~~~~p~~i~~~~~~---~i~~i~~g---~~~~~~l 134 (372)
..|..++.... ..+.-..||.|..|-...... ...+.. ... .|..++.. ....+.-
T Consensus 161 ~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~--------------~~~~~~-~~~~~~~v~~~~~~~~~~~~l~~~ 225 (615)
T 1pgu_A 161 QRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKF--------------SASDRT-HHKQGSFVRDVEFSPDSGEFVITV 225 (615)
T ss_dssp SCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEE--------------EEEECS-SSCTTCCEEEEEECSTTCCEEEEE
T ss_pred ccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcce--------------eeeecc-cCCCCceEEEEEECCCCCCEEEEE
Confidence 35666666554 345556788888886322110 001111 111 35555444 3355566
Q ss_pred eCCCcEEEEeCCCCCCCCCCCCCcccccceEecc---cCCCcEEEEEe-cCCeEEEEeCCCcEEEEeCC
Q 042844 135 GDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEA---LAGEKIVKVSF-GWGHALAQTEDGKLFGWGYS 199 (372)
Q Consensus 135 t~~g~v~~~G~n~~gqlg~~~~~~~~~~p~~i~~---~~~~~i~~I~~-g~~~~~~lt~~g~vy~wG~n 199 (372)
+.+|.|+.|-.... + ....+.. .....|..++. .....+....+|.|..|-..
T Consensus 226 ~~dg~i~vwd~~~~-~-----------~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~wd~~ 282 (615)
T 1pgu_A 226 GSDRKISCFDGKSG-E-----------FLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVT 282 (615)
T ss_dssp ETTCCEEEEETTTC-C-----------EEEECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETT
T ss_pred eCCCeEEEEECCCC-C-----------EeEEecccccccCCceEEEEEcCCCEEEEEcCCCcEEEEECC
Confidence 78899999964211 0 0011101 12245666666 44456666778899999764
No 55
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=61.59 E-value=78 Score=27.20 Aligned_cols=109 Identities=14% Similarity=0.129 Sum_probs=59.6
Q ss_pred CCeEEEecCCC-----ceEEEecCCcEEEEeCCCCCCCcCCCCCCCCccCCCceeecCCceeEEEEee--cCcEEEEEeC
Q 042844 64 SDVTSVSAGHY-----HSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFA--SGVVSSAIGD 136 (372)
Q Consensus 64 ~~i~~I~~G~~-----h~~~lt~~G~v~~~G~n~~gqlg~~~~~~~~~~~~p~~i~~~~~~~i~~i~~--g~~~~~~lt~ 136 (372)
..|..|+.... ..+.-..||.|..|-....++. ....+.. ....|..++. .....+.-+.
T Consensus 40 ~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~------------~~~~~~~-h~~~v~~~~~~~~~~~l~s~~~ 106 (368)
T 3mmy_A 40 DSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQT------------IPKAQQM-HTGPVLDVCWSDDGSKVFTASC 106 (368)
T ss_dssp SCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCE------------EEEEEEE-CSSCEEEEEECTTSSEEEEEET
T ss_pred CceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCce------------eEEEecc-ccCCEEEEEECcCCCEEEEEcC
Confidence 46888888865 3344467899999975432110 0011111 1123444443 3445666778
Q ss_pred CCcEEEEeCCCCCCCCCCCCCcccccceEecccCCCcEEEEEe--cCC--eEEEEeCCCcEEEEeCC
Q 042844 137 DGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSF--GWG--HALAQTEDGKLFGWGYS 199 (372)
Q Consensus 137 ~g~v~~~G~n~~gqlg~~~~~~~~~~p~~i~~~~~~~i~~I~~--g~~--~~~~lt~~g~vy~wG~n 199 (372)
||.|..|-.... . +..+.. ....|..++. ..+ ..+.-..+|.|+.|-..
T Consensus 107 dg~v~iwd~~~~----------~---~~~~~~-~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~ 159 (368)
T 3mmy_A 107 DKTAKMWDLSSN----------Q---AIQIAQ-HDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTR 159 (368)
T ss_dssp TSEEEEEETTTT----------E---EEEEEE-CSSCEEEEEEEECSSCEEEEEEETTSEEEEECSS
T ss_pred CCcEEEEEcCCC----------C---ceeecc-ccCceEEEEEEeCCCCCEEEEccCCCcEEEEECC
Confidence 899999964321 0 111111 2245777765 333 35555778899999754
No 56
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=61.29 E-value=87 Score=27.65 Aligned_cols=110 Identities=9% Similarity=0.127 Sum_probs=56.1
Q ss_pred CCeEEEecCCC---ceEEEecCCcEEEEeCCCCCCCcCCCCCCCCccCCCceeecCC-----ceeEEEEeecC---cEEE
Q 042844 64 SDVTSVSAGHY---HSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLD-----QVNVCAAFASG---VVSS 132 (372)
Q Consensus 64 ~~i~~I~~G~~---h~~~lt~~G~v~~~G~n~~gqlg~~~~~~~~~~~~p~~i~~~~-----~~~i~~i~~g~---~~~~ 132 (372)
..|..++.... ..+.-..||.|..|-......+ ..+.... ...+..++... ...+
T Consensus 166 ~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~--------------~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 231 (416)
T 2pm9_A 166 DEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEV--------------IHLSYTSPNSGIKQQLSVVEWHPKNSTRVA 231 (416)
T ss_dssp CCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEE--------------EEECCCCCSSCCCCCEEEEEECSSCTTEEE
T ss_pred CCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcc--------------eEEeccccccccCCceEEEEECCCCCCEEE
Confidence 45777776654 2333457899999975431110 0011100 22344444432 2344
Q ss_pred EEeCCC---cEEEEeCCCCCCCCCCCCCcccccceEecc-cCCCcEEEEEe---cCCeEEEEeCCCcEEEEeCC
Q 042844 133 AIGDDG---SLWVWGKSKRGQLGLGKDITEAIVPSRVEA-LAGEKIVKVSF---GWGHALAQTEDGKLFGWGYS 199 (372)
Q Consensus 133 ~lt~~g---~v~~~G~n~~gqlg~~~~~~~~~~p~~i~~-~~~~~i~~I~~---g~~~~~~lt~~g~vy~wG~n 199 (372)
.-..++ .|+.|-.....+ +..... .....|..++. .....+.-..+|.|+.|-..
T Consensus 232 ~~~~d~~~~~i~~~d~~~~~~------------~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~ 293 (416)
T 2pm9_A 232 TATGSDNDPSILIWDLRNANT------------PLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPE 293 (416)
T ss_dssp EEECCSSSCCCCEEETTSTTS------------CSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSS
T ss_pred EEECCCCCceEEEEeCCCCCC------------CcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCC
Confidence 455666 777775432111 111111 11235777776 34566677788999999754
No 57
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=61.07 E-value=80 Score=27.14 Aligned_cols=151 Identities=11% Similarity=0.065 Sum_probs=70.1
Q ss_pred eEEEEeeCCCcEEEEeCCCCCccCCCCCCCCCCCCccceeecCCCCCCeEEEecCC--CceEEEecCCcEEEEeCCCCCC
Q 042844 18 RIFMRSASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGH--YHSLAVTNNGAVWAWGRNNEVQ 95 (372)
Q Consensus 18 ~~~~~l~~~g~vy~wG~n~~gqLG~~~~~~~~~~~~~~p~~i~~~~~~i~~I~~G~--~h~~~lt~~G~v~~~G~n~~gq 95 (372)
+.++.-..+|.|++|-.... .....+..-...|..++... .+.+....||.|+.|-......
T Consensus 45 ~~l~~~~~dg~i~vwd~~~~----------------~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~ 108 (369)
T 3zwl_B 45 DLLFSCSKDSSASVWYSLNG----------------ERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQC 108 (369)
T ss_dssp CEEEEEESSSCEEEEETTTC----------------CEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCE
T ss_pred CEEEEEeCCCEEEEEeCCCc----------------hhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcE
Confidence 44555567778888843221 11122222334677777653 4455567889999997532211
Q ss_pred CcCCCCCCCCccCCCceeecCCceeEEEEeecCcEEEEEeCC-----CcEEEEeCCCCCCCCCCCCCcccccceEec-cc
Q 042844 96 LGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDD-----GSLWVWGKSKRGQLGLGKDITEAIVPSRVE-AL 169 (372)
Q Consensus 96 lg~~~~~~~~~~~~p~~i~~~~~~~i~~i~~g~~~~~~lt~~-----g~v~~~G~n~~gqlg~~~~~~~~~~p~~i~-~~ 169 (372)
+ ..+.....+.-..++......++...+ |.|+.|-.........-.. ........+. ..
T Consensus 109 ~--------------~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~-~~~~~~~~~~~~~ 173 (369)
T 3zwl_B 109 V--------------ATWKSPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTK-VSEEPIHKIITHE 173 (369)
T ss_dssp E--------------EEEECSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEE-ECSSCSEEEECCT
T ss_pred E--------------EEeecCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecc-cccceeeeccCCc
Confidence 0 111111222223333334445555555 7888886433211100000 0000000111 11
Q ss_pred CCCcEEEEEec--CCeEEEEeCCCcEEEEeCC
Q 042844 170 AGEKIVKVSFG--WGHALAQTEDGKLFGWGYS 199 (372)
Q Consensus 170 ~~~~i~~I~~g--~~~~~~lt~~g~vy~wG~n 199 (372)
....+..++.. ....++-+.+|.|+.|-..
T Consensus 174 ~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~ 205 (369)
T 3zwl_B 174 GLDAATVAGWSTKGKYIIAGHKDGKISKYDVS 205 (369)
T ss_dssp TCCCEEEEEECGGGCEEEEEETTSEEEEEETT
T ss_pred CccceeEEEEcCCCCEEEEEcCCCEEEEEECC
Confidence 11145555443 3355666788889988754
No 58
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=60.97 E-value=97 Score=28.07 Aligned_cols=155 Identities=9% Similarity=0.096 Sum_probs=83.9
Q ss_pred eEEEEeeCCCcEEEEeCCCCCccCCCCCCCCCCCCcc----c---eeecCCCCCCeEEEecCCCceEEEecCCcEEEEeC
Q 042844 18 RIFMRSASGTAVVSFGDGSQGALGLPTSLTGVGGDAY----E---PTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGR 90 (372)
Q Consensus 18 ~~~~~l~~~g~vy~wG~n~~gqLG~~~~~~~~~~~~~----~---p~~i~~~~~~i~~I~~G~~h~~~lt~~G~v~~~G~ 90 (372)
..++.-..|+.|++|-......+.............. . -..+..-...+..++......+.-..||.|..|-.
T Consensus 218 ~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~vwd~ 297 (464)
T 3v7d_B 218 KYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDV 297 (464)
T ss_dssp EEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEEEEETTEEEEEETTSCEEEEET
T ss_pred CEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEEcCCCCEEEEEeCCCeEEEEEC
Confidence 5677777899999997654332211110000000000 0 00111222457777777777788888999999975
Q ss_pred CCCCCCcCCCCCCCCccCCCceeecCCceeEEEEeec--CcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccccceEecc
Q 042844 91 NNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFAS--GVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEA 168 (372)
Q Consensus 91 n~~gqlg~~~~~~~~~~~~p~~i~~~~~~~i~~i~~g--~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~p~~i~~ 168 (372)
.....+ ..+.. ....|..++.. ....+.-+.||.|+.|-... + .....+.
T Consensus 298 ~~~~~~--------------~~~~~-~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~-~-----------~~~~~~~- 349 (464)
T 3v7d_B 298 AQMKCL--------------YILSG-HTDRIYSTIYDHERKRCISASMDTTIRIWDLEN-G-----------ELMYTLQ- 349 (464)
T ss_dssp TTTEEE--------------EEECC-CSSCEEEEEEETTTTEEEEEETTSCEEEEETTT-T-----------EEEEEEC-
T ss_pred CCCcEE--------------EEecC-CCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC-C-----------cEEEEEe-
Confidence 321110 01111 11234444333 34566677889999985421 0 0011111
Q ss_pred cCCCcEEEEEecCCeEEEEeCCCcEEEEeCCC
Q 042844 169 LAGEKIVKVSFGWGHALAQTEDGKLFGWGYSA 200 (372)
Q Consensus 169 ~~~~~i~~I~~g~~~~~~lt~~g~vy~wG~n~ 200 (372)
.....|..++....+.+.-..+|.|..|-...
T Consensus 350 ~h~~~v~~~~~~~~~l~s~s~dg~v~vwd~~~ 381 (464)
T 3v7d_B 350 GHTALVGLLRLSDKFLVSAAADGSIRGWDAND 381 (464)
T ss_dssp CCSSCEEEEEECSSEEEEEETTSEEEEEETTT
T ss_pred CCCCcEEEEEEcCCEEEEEeCCCcEEEEECCC
Confidence 12346888888888888889999999998653
No 59
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=58.69 E-value=84 Score=26.63 Aligned_cols=139 Identities=13% Similarity=0.192 Sum_probs=67.8
Q ss_pred eEEEEeeCCCcEEEEeCCCCCccCCCCCCCCCCCCccceeecCCCCCCeEEEecCCCc--eEEEecCCcEEEEeCCCCCC
Q 042844 18 RIFMRSASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYH--SLAVTNNGAVWAWGRNNEVQ 95 (372)
Q Consensus 18 ~~~~~l~~~g~vy~wG~n~~gqLG~~~~~~~~~~~~~~p~~i~~~~~~i~~I~~G~~h--~~~lt~~G~v~~~G~n~~gq 95 (372)
+.++.-..||.|..|..... .....+..-...|..++..... .+.-..||.|..|-......
T Consensus 36 ~~l~s~~~dg~i~iw~~~~~----------------~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~ 99 (312)
T 4ery_A 36 EWLASSSADKLIKIWGAYDG----------------KFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKC 99 (312)
T ss_dssp SEEEEEETTSCEEEEETTTC----------------CEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCE
T ss_pred CEEEEeeCCCeEEEEeCCCc----------------ccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCCcE
Confidence 34555567777878764321 1111222233457777665443 34445788899996432111
Q ss_pred CcCCCCCCCCccCCCceeecC-CceeEEEEeecCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccccceEecccCCCcE
Q 042844 96 LGRGALESRATWNDPKRVEGL-DQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKI 174 (372)
Q Consensus 96 lg~~~~~~~~~~~~p~~i~~~-~~~~i~~i~~g~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~p~~i~~~~~~~i 174 (372)
+ ..+..- ..+..+.+.......+.-+.||.|..|-.... . ....+. .....|
T Consensus 100 ~--------------~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~---------~---~~~~~~-~~~~~v 152 (312)
T 4ery_A 100 L--------------KTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG---------K---CLKTLP-AHSDPV 152 (312)
T ss_dssp E--------------EEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTC---------C---EEEEEC-CCSSCE
T ss_pred E--------------EEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC---------E---EEEEec-CCCCcE
Confidence 0 011111 11122223333345556677888888854211 0 001111 112346
Q ss_pred EEEEecC--CeEEEEeCCCcEEEEeCC
Q 042844 175 VKVSFGW--GHALAQTEDGKLFGWGYS 199 (372)
Q Consensus 175 ~~I~~g~--~~~~~lt~~g~vy~wG~n 199 (372)
..++... ...+.-..+|.|..|-..
T Consensus 153 ~~~~~~~~~~~l~~~~~d~~i~~wd~~ 179 (312)
T 4ery_A 153 SAVHFNRDGSLIVSSSYDGLCRIWDTA 179 (312)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred EEEEEcCCCCEEEEEeCCCcEEEEECC
Confidence 6665543 345555778888888753
No 60
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=57.07 E-value=93 Score=26.63 Aligned_cols=140 Identities=12% Similarity=0.166 Sum_probs=70.6
Q ss_pred eEEEEeeCCCcEEEEeCCCCCccCCCCCCCCCCCCccceeecCCCCCCeEEEe--------cCCCceEEEecCCcEEEEe
Q 042844 18 RIFMRSASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVS--------AGHYHSLAVTNNGAVWAWG 89 (372)
Q Consensus 18 ~~~~~l~~~g~vy~wG~n~~gqLG~~~~~~~~~~~~~~p~~i~~~~~~i~~I~--------~G~~h~~~lt~~G~v~~~G 89 (372)
..++.-..+|.|+.|-..... .....+......|..+. ....+.+.-..||.|..|-
T Consensus 81 ~~l~~~~~dg~i~iwd~~~~~---------------~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd 145 (357)
T 3i2n_A 81 RYLATGDFGGNLHIWNLEAPE---------------MPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWD 145 (357)
T ss_dssp CCEEEEETTSCEEEECTTSCS---------------SCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEEC
T ss_pred ceEEEecCCCeEEEEeCCCCC---------------ccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEe
Confidence 445555567777777543211 01112222334566663 2234555567889999997
Q ss_pred CCCCCCCcCCCCCCCCccCCCceeecCC---ceeEEEEe------ecCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCccc
Q 042844 90 RNNEVQLGRGALESRATWNDPKRVEGLD---QVNVCAAF------ASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEA 160 (372)
Q Consensus 90 ~n~~gqlg~~~~~~~~~~~~p~~i~~~~---~~~i~~i~------~g~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~ 160 (372)
...... ....+.... ...+..+. ......+.-+.+|.|+.|-.... .
T Consensus 146 ~~~~~~-------------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~----------~- 201 (357)
T 3i2n_A 146 PRQKDD-------------PVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNM----------A- 201 (357)
T ss_dssp TTSCSS-------------CSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTT----------E-
T ss_pred CCCCCC-------------cceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccC----------c-
Confidence 543210 011111101 12344443 33445566677899999964321 0
Q ss_pred ccceEecccCCCcEEEEEec-----CCeEEEEeCCCcEEEEeCC
Q 042844 161 IVPSRVEALAGEKIVKVSFG-----WGHALAQTEDGKLFGWGYS 199 (372)
Q Consensus 161 ~~p~~i~~~~~~~i~~I~~g-----~~~~~~lt~~g~vy~wG~n 199 (372)
+..... ....|..++.. ....++-..+|.|+.|-..
T Consensus 202 --~~~~~~-~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~ 242 (357)
T 3i2n_A 202 --LRWETN-IKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMR 242 (357)
T ss_dssp --EEEEEE-CSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEE
T ss_pred --eeeecC-CCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCc
Confidence 111111 12357777765 3556666788899998753
No 61
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=56.37 E-value=1.1e+02 Score=27.14 Aligned_cols=168 Identities=10% Similarity=-0.009 Sum_probs=91.6
Q ss_pred eeeeeeEEEEeeCCCcEEEEeCCCCCccCCCCCCCCCCCCcccee--ecCCC--CCCeEEEecCC-----CceEEEecCC
Q 042844 13 NVLTSRIFMRSASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPT--RVPGL--PSDVTSVSAGH-----YHSLAVTNNG 83 (372)
Q Consensus 13 ~~~~~~~~~~l~~~g~vy~wG~n~~gqLG~~~~~~~~~~~~~~p~--~i~~~--~~~i~~I~~G~-----~h~~~lt~~G 83 (372)
.+.+...+++.|+.|++|..-... |.... ....=.|+ .++ + .++|+.+.+.. ...+++|++|
T Consensus 49 ~~~t~d~ll~fT~~Gr~y~~~~~~---lp~~~-----r~~~G~~i~~~l~-l~~~e~i~~~~~~~~~~~e~~~v~~T~~G 119 (327)
T 3uc1_A 49 VCSTHDLILFFTTQGRVYRAKAYD---LPEAS-----RTARGQHVANLLA-FQPEERIAQVIQIRGYTDAPYLVLATRNG 119 (327)
T ss_dssp EEETTSEEEEEETTSEEEEEEGGG---SCBCC-----SSSCCEEHHHHTT-CCTTCCEEEEEEESSTTSSSEEEEEETTS
T ss_pred EeCCCCEEEEEeCCCeEEEEEHHH---CcCCC-----ccCCCEEHHHccC-CCCCCEEEEEEEeccCCCCCEEEEEcCCC
Confidence 345667788899999999987543 22211 01122231 222 3 24687776654 4578899999
Q ss_pred cEEEEeCCCCCCCcCCCCCCCCccCCCceeecCCceeEEEEeecCcEEEEEeCCCcEEEEeCC--CCCCCCCCCCCcccc
Q 042844 84 AVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKS--KRGQLGLGKDITEAI 161 (372)
Q Consensus 84 ~v~~~G~n~~gqlg~~~~~~~~~~~~p~~i~~~~~~~i~~i~~g~~~~~~lt~~g~v~~~G~n--~~gqlg~~~~~~~~~ 161 (372)
.+.-.-...+....... ..-..+..-+...-...+.+..+.+++|++|++|.+-.. .--..|.... -
T Consensus 120 ~iKr~~l~~~~~~~r~G-------~~~i~lke~D~lv~~~~~~~~d~ill~T~~G~~~rf~~~~~eip~~gr~a~---G- 188 (327)
T 3uc1_A 120 LVKKSKLTDFDSNRSGG-------IVAVNLRDNDELVGAVLCSAGDDLLLVSANGQSIRFSATDEALRPMGRATS---G- 188 (327)
T ss_dssp EEEEEEGGGGCCCCSSC-------EESCBCCTTCCEEEEEEECTTCEEEEEETTSEEEEEECCTTTSCCCCTTSB---C-
T ss_pred EEEEeEHHHhhccccCc-------eEEEEECCCCEEEEEEEecCCCEEEEEECCCeEEEEECcccccCcCCcCCC---C-
Confidence 98887644332111100 000011111122233344567789999999999998765 3222222110 0
Q ss_pred cceEecccCCCcEEEEEec--CCeEEEEeCCCcEEEEeCCCC
Q 042844 162 VPSRVEALAGEKIVKVSFG--WGHALAQTEDGKLFGWGYSAD 201 (372)
Q Consensus 162 ~p~~i~~~~~~~i~~I~~g--~~~~~~lt~~g~vy~wG~n~~ 201 (372)
. ..+..-.+++|+.+..- ..+.+++|++|.+.-.-...+
T Consensus 189 v-~~i~L~~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~ 229 (327)
T 3uc1_A 189 V-QGMRFNIDDRLLSLNVVREGTYLLVATSGGYAKRTAIEEY 229 (327)
T ss_dssp E-ESSCCCTTCCEEEEEECCTTCEEEEEETTSEEEEEEGGGS
T ss_pred e-eeecCCCCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHHc
Confidence 0 01222345677776654 346788899987776654433
No 62
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=55.70 E-value=1.1e+02 Score=27.08 Aligned_cols=240 Identities=11% Similarity=0.000 Sum_probs=0.0
Q ss_pred eeEEEEeeCCCcEEEEeCCCCCccCCCCCCCCCCCCccceeecCCCCCCeEEEecC--CCceEEEecCCcEEEEeCCCCC
Q 042844 17 SRIFMRSASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAG--HYHSLAVTNNGAVWAWGRNNEV 94 (372)
Q Consensus 17 ~~~~~~l~~~g~vy~wG~n~~gqLG~~~~~~~~~~~~~~p~~i~~~~~~i~~I~~G--~~h~~~lt~~G~v~~~G~n~~g 94 (372)
.++++.-..|+.|++|-.. .......+..-...|..++.. ....+.-..||.|..|-.....
T Consensus 151 ~~~l~s~s~d~~i~iwd~~----------------~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~ 214 (420)
T 3vl1_A 151 GEALISSSQDMQLKIWSVK----------------DGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGT 214 (420)
T ss_dssp SSEEEEEETTSEEEEEETT----------------TCCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTE
T ss_pred CCEEEEEeCCCeEEEEeCC----------------CCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCc
Q ss_pred CCcCCCCCCCCccCCCceeecC-------------CceeEEEEeecCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccc
Q 042844 95 QLGRGALESRATWNDPKRVEGL-------------DQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAI 161 (372)
Q Consensus 95 qlg~~~~~~~~~~~~p~~i~~~-------------~~~~i~~i~~g~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~ 161 (372)
.+..-... .....+..-..+ ....-..++......++-+.+|.|..| +.....
T Consensus 215 ~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~------------d~~~~~ 280 (420)
T 3vl1_A 215 TIHTFNRK--ENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVH------------NVFSKE 280 (420)
T ss_dssp EEEEECBT--TBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEE------------ETTTCC
T ss_pred eeEEeecC--CCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEE------------ECCCCc
Q ss_pred cceEecccCCCcEEEEEecCC---eEEEEeCCCcEEEEeCCCCCCCCCCCCCCcCCCCCCCcCCCCCCccccchhhHHHh
Q 042844 162 VPSRVEALAGEKIVKVSFGWG---HALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKA 238 (372)
Q Consensus 162 ~p~~i~~~~~~~i~~I~~g~~---~~~~lt~~g~vy~wG~n~~gqlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (372)
.+..+.......|..++...+ ..++-..+|.|+.|-.....++-..
T Consensus 281 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~------------------------------- 329 (420)
T 3vl1_A 281 QTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGE------------------------------- 329 (420)
T ss_dssp EEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEE-------------------------------
T ss_pred eeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhh-------------------------------
Q ss_pred hhhhhcccccccCCCceeceeeecCccEEEEEecCCeeEEEec-CCCEEEEeCCCCCccCCCCCCCcccceeec-cccEE
Q 042844 239 QKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGR-NGVLLSCGSNVYGQLGREKQDMGMFPVDIN-FHPVS 316 (372)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~p~~i~~~~i~~I~~G~~h~~alt~-~G~vy~wG~n~~gqlG~~~~~~~~~P~~v~-~~i~~ 316 (372)
...-....|..+.......++... ||.|..|-.....+.-.-..........-. ..|..
T Consensus 330 -------------------~~~~~~~~v~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 390 (420)
T 3vl1_A 330 -------------------FLINEGTPINNVYFAAGALFVSSGFDTSIKLDIISDPESERPAIEFETPTFLVSNDDAVSQ 390 (420)
T ss_dssp -------------------EEESTTSCEEEEEEETTEEEEEETTTEEEEEEEECCTTCCSCEECTTSCEEECCSSCCCCE
T ss_pred -------------------hhccCCCCceEEEeCCCCEEEEecCCccEEEEeccCCCCCccceeccCccEEccCCcceEE
Q ss_pred EecCCCce-----EEEEeeccccccCCCccEEEe
Q 042844 317 ISSGLGHS-----LAICEVRSSNVTGGARGIVSW 345 (372)
Q Consensus 317 ia~G~~~s-----~~l~~~~~~~~~~~~g~v~~w 345 (372)
++-..+.. ++... +|.+..|
T Consensus 391 ~~~s~~~~~~g~l~a~g~---------~g~~~~~ 415 (420)
T 3vl1_A 391 FCYVSDDESNGEVLEVGK---------NNFCALY 415 (420)
T ss_dssp EEEECCSSSSCEEEEEET---------TTEEEEE
T ss_pred EEEccCCCCcceEEEEcC---------CceEEEE
No 63
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=54.99 E-value=1.1e+02 Score=26.81 Aligned_cols=121 Identities=14% Similarity=0.253 Sum_probs=63.8
Q ss_pred CCCeEEEecCCCceEEEecCCcEEEEeCCCCCCCcCCCCCCCCccCCCceeecCCceeEEEEeec------C---cEEEE
Q 042844 63 PSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFAS------G---VVSSA 133 (372)
Q Consensus 63 ~~~i~~I~~G~~h~~~lt~~G~v~~~G~n~~gqlg~~~~~~~~~~~~p~~i~~~~~~~i~~i~~g------~---~~~~~ 133 (372)
...|..|+......+.-..||.|+.|-...... . ........+.. ....|..++-. . ...+.
T Consensus 16 ~~~i~~~~~~~~~l~s~~~dg~i~iw~~~~~~~------~--~~~~~~~~~~~-h~~~v~~~~~~~~~~~~g~~~~~l~s 86 (397)
T 1sq9_A 16 DADIFSVSACNSFTVSCSGDGYLKVWDNKLLDN------E--NPKDKSYSHFV-HKSGLHHVDVLQAIERDAFELCLVAT 86 (397)
T ss_dssp SSCEEEEEECSSEEEEEETTSEEEEEESBCCTT------C--CGGGGEEEEEC-CTTCEEEEEEEEEEETTTEEEEEEEE
T ss_pred hcCeEEEEecCCeEEEEcCCCEEEEEECCCccc------c--cCCCcceEEec-CCCcEEEEEEecccccCCccccEEEE
Confidence 357888888887667778899999998543210 0 00011111221 11234444333 3 44555
Q ss_pred EeCCCcEEEEeCCCCCCCCCCCCCcccccceEecccC----CCcEEEEEec------CCe-EEEEeCCCcEEEEeCC
Q 042844 134 IGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALA----GEKIVKVSFG------WGH-ALAQTEDGKLFGWGYS 199 (372)
Q Consensus 134 lt~~g~v~~~G~n~~gqlg~~~~~~~~~~p~~i~~~~----~~~i~~I~~g------~~~-~~~lt~~g~vy~wG~n 199 (372)
-..+|.|+.|-...... ........+.... ...|..++.. ..+ .++-+.+|.|+.|-..
T Consensus 87 ~~~dg~i~iw~~~~~~~-------~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 156 (397)
T 1sq9_A 87 TSFSGDLLFYRITREDE-------TKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFH 156 (397)
T ss_dssp EETTSCEEEEEEEECTT-------TCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEE
T ss_pred EcCCCCEEEEEccCCcc-------cccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCC
Confidence 67889999985432100 0000011222221 2457777665 444 5566788999999754
No 64
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=54.68 E-value=2.1e+02 Score=30.00 Aligned_cols=77 Identities=9% Similarity=-0.135 Sum_probs=40.6
Q ss_pred cEEEEEecCC--eeEEEecCCCEEEEeCCCCCccCCCCCCCc-ccceeeccccEEEecCCCceEEEEeeccccccCCCcc
Q 042844 265 EVVDIACGFD--HSLVLGRNGVLLSCGSNVYGQLGREKQDMG-MFPVDINFHPVSISSGLGHSLAICEVRSSNVTGGARG 341 (372)
Q Consensus 265 ~i~~I~~G~~--h~~alt~~G~vy~wG~n~~gqlG~~~~~~~-~~P~~v~~~i~~ia~G~~~s~~l~~~~~~~~~~~~g~ 341 (372)
.|..++...+ ..+.-..||.|+.|-......+..-..... .....-...|..++...+..++++. +|.
T Consensus 1129 ~v~~~~~s~dg~~lat~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~s~---------~g~ 1199 (1249)
T 3sfz_A 1129 CVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSA---------GGY 1199 (1249)
T ss_dssp CEEEEEECSSSSEEEEEETTSCCCEEESSSSCCCCCCCCCC-------CCSCCCEEEECTTSSCEEEE---------SSS
T ss_pred cEEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEeccccccccccccCceEEEEEECCCCCEEEEC---------CCe
Confidence 3555544322 333345688899997543222211000000 0001122567788887777777887 889
Q ss_pred EEEecCCCC
Q 042844 342 IVSWGWNRS 350 (372)
Q Consensus 342 v~~wG~n~~ 350 (372)
+..|--...
T Consensus 1200 v~vwd~~~g 1208 (1249)
T 3sfz_A 1200 LKWWNVATG 1208 (1249)
T ss_dssp EEEBCSSSC
T ss_pred EEEEECCCC
Confidence 999975443
No 65
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=54.65 E-value=1e+02 Score=26.51 Aligned_cols=147 Identities=12% Similarity=0.092 Sum_probs=76.9
Q ss_pred eeEEEEeeCCCcEEEEeCCCCCccCCCCCCCCCCCCccceeecCCCCCCeEEEecCCC----ceEEEecCCcEEEEeCCC
Q 042844 17 SRIFMRSASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHY----HSLAVTNNGAVWAWGRNN 92 (372)
Q Consensus 17 ~~~~~~l~~~g~vy~wG~n~~gqLG~~~~~~~~~~~~~~p~~i~~~~~~i~~I~~G~~----h~~~lt~~G~v~~~G~n~ 92 (372)
.+.++.-..||.|++|-.... + ......+......|..++.... ..+....||.|..|-...
T Consensus 69 ~~~l~s~~~dg~v~iwd~~~~-~-------------~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~ 134 (379)
T 3jrp_A 69 GTILASCSYDGKVLIWKEENG-R-------------WSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKE 134 (379)
T ss_dssp CSEEEEEETTSCEEEEEEETT-E-------------EEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCT
T ss_pred CCEEEEeccCCEEEEEEcCCC-c-------------eeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCC
Confidence 455666667888888854321 0 0111222223346777777644 456667899999997543
Q ss_pred CCCCcCCCCCCCCccCCCceeecCCceeEEEEeec---------------CcEEEEEeCCCcEEEEeCCCCCCCCCCCCC
Q 042844 93 EVQLGRGALESRATWNDPKRVEGLDQVNVCAAFAS---------------GVVSSAIGDDGSLWVWGKSKRGQLGLGKDI 157 (372)
Q Consensus 93 ~gqlg~~~~~~~~~~~~p~~i~~~~~~~i~~i~~g---------------~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~ 157 (372)
... ..+..+.. ....|..++.. ....+.-+.+|.|+.|-....
T Consensus 135 ~~~------------~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~--------- 192 (379)
T 3jrp_A 135 NGT------------TSPIIIDA-HAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSD--------- 192 (379)
T ss_dssp TSC------------CCEEEEEC-CTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETT---------
T ss_pred CCc------------eeeEEecC-CCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCC---------
Confidence 211 01111111 11234444333 345666678899999954210
Q ss_pred cccccceEecccCCCcEEEEEecC-----CeEEEEeCCCcEEEEeCC
Q 042844 158 TEAIVPSRVEALAGEKIVKVSFGW-----GHALAQTEDGKLFGWGYS 199 (372)
Q Consensus 158 ~~~~~p~~i~~~~~~~i~~I~~g~-----~~~~~lt~~g~vy~wG~n 199 (372)
.....+..........|..++... ...+....+|.|..|-..
T Consensus 193 ~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~ 239 (379)
T 3jrp_A 193 AQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQD 239 (379)
T ss_dssp TTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEES
T ss_pred CcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCC
Confidence 011111111111124577777764 456666788999999754
No 66
>3p6j_A De novo designed beta-trefoil architecture with S primary structure; de novo protein; 1.35A {Synthetic}
Probab=54.57 E-value=71 Score=24.52 Aligned_cols=66 Identities=14% Similarity=0.044 Sum_probs=39.5
Q ss_pred CCeEEEecC-CCceEEEecCCcEEEEeCCCCCCCcCCCCCCCCccCCCceeecCCceeEEEEeecCcEEEEEeCCCcEEE
Q 042844 64 SDVTSVSAG-HYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWV 142 (372)
Q Consensus 64 ~~i~~I~~G-~~h~~~lt~~G~v~~~G~n~~gqlg~~~~~~~~~~~~p~~i~~~~~~~i~~i~~g~~~~~~lt~~g~v~~ 142 (372)
..++.|.|- ..+.+++..+|+||.--.... + -..............|..+..|. .+|++++|++|.
T Consensus 72 ~G~V~L~g~~sg~yL~mn~~G~l~Gs~~~t~--------e---csflEi~~en~y~v~i~g~~sg~--YLamnk~Grlyg 138 (142)
T 3p6j_A 72 NGEVLLKSTETGQYLRINPDGTVDGTRDRSD--------T---HIQFQISPEGNGEVLLKSTETGQ--YLRINPDGTVDG 138 (142)
T ss_dssp TTEEEEEETTTTEEEEECTTSBEEEECCTTC--------G---GGCEEEEECSTTCEEEEETTTCC--EEEECTTSBEEE
T ss_pred CCEEEEEEecCCEEEeECCCCCEeecccCCC--------C---ceEEEEEeecCcEEEEEEecCCE--EEEECCCcCCcc
Confidence 357788875 577889999999997532110 0 00111112222344455555554 789999999995
No 67
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=52.69 E-value=1e+02 Score=25.74 Aligned_cols=138 Identities=14% Similarity=0.005 Sum_probs=74.2
Q ss_pred eeEEEEeeCCCcEEEEeCCCCCccCCCCCCCCCCCCccceeecCCCCCCeEEEecC--CCceEEEecCCcEEEEeCCCCC
Q 042844 17 SRIFMRSASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAG--HYHSLAVTNNGAVWAWGRNNEV 94 (372)
Q Consensus 17 ~~~~~~l~~~g~vy~wG~n~~gqLG~~~~~~~~~~~~~~p~~i~~~~~~i~~I~~G--~~h~~~lt~~G~v~~~G~n~~g 94 (372)
...++.-..||.|++|-.... .....+......|..++.. ..+.++-..||.+..|-.....
T Consensus 29 ~~~l~s~~~dg~v~vw~~~~~----------------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~ 92 (313)
T 3odt_A 29 DSKVASVSRDGTVRLWSKDDQ----------------WLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATS 92 (313)
T ss_dssp TTEEEEEETTSEEEEEEESSS----------------EEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEETTCCT
T ss_pred CCEEEEEEcCCcEEEEECCCC----------------EEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEEeeecC
Confidence 345666678888888864221 1111222223456555544 3444555678888888643321
Q ss_pred CCcCCCCCCCCccCCCceeecCCceeEEEEeecCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccccceEecccCCCcE
Q 042844 95 QLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKI 174 (372)
Q Consensus 95 qlg~~~~~~~~~~~~p~~i~~~~~~~i~~i~~g~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~p~~i~~~~~~~i 174 (372)
. ..+..........|..++......+.-+.+|.|+.|-.. .+..........+
T Consensus 93 ~------------~~~~~~~~~~~~~i~~~~~~~~~l~~~~~d~~i~~~d~~---------------~~~~~~~~~~~~v 145 (313)
T 3odt_A 93 G------------EDPLYTLIGHQGNVCSLSFQDGVVISGSWDKTAKVWKEG---------------SLVYNLQAHNASV 145 (313)
T ss_dssp T------------SCC-CEECCCSSCEEEEEEETTEEEEEETTSEEEEEETT---------------EEEEEEECCSSCE
T ss_pred C------------CCcccchhhcccCEEEEEecCCEEEEEeCCCCEEEEcCC---------------cEEEecccCCCce
Confidence 0 011111111223566666667777888899999999410 0111111122345
Q ss_pred EEEEe---cCCeEEEEeCCCcEEEEe
Q 042844 175 VKVSF---GWGHALAQTEDGKLFGWG 197 (372)
Q Consensus 175 ~~I~~---g~~~~~~lt~~g~vy~wG 197 (372)
..++. .....++-+.+|.|+.|-
T Consensus 146 ~~~~~~~~~~~~l~~~~~d~~i~i~d 171 (313)
T 3odt_A 146 WDAKVVSFSENKFLTASADKTIKLWQ 171 (313)
T ss_dssp EEEEEEETTTTEEEEEETTSCEEEEE
T ss_pred eEEEEccCCCCEEEEEECCCCEEEEe
Confidence 55554 566777778899999996
No 68
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=49.54 E-value=1.3e+02 Score=26.21 Aligned_cols=108 Identities=13% Similarity=0.085 Sum_probs=58.6
Q ss_pred CCCeEEEecCC---CceEEEecCCcEEEEeCCCCCCCcCCCCCCCCccCCCceeecC----CceeEEEEeecCcEEEEEe
Q 042844 63 PSDVTSVSAGH---YHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGL----DQVNVCAAFASGVVSSAIG 135 (372)
Q Consensus 63 ~~~i~~I~~G~---~h~~~lt~~G~v~~~G~n~~gqlg~~~~~~~~~~~~p~~i~~~----~~~~i~~i~~g~~~~~~lt 135 (372)
...|..++... ...+.-..||.|..|-... .. ...+... ..+.-+.++......+.-+
T Consensus 118 ~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~--------------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 182 (383)
T 3ei3_B 118 GDAITGMKFNQFNTNQLFVSSIRGATTLRDFSG-SV--------------IQVFAKTDSWDYWYCCVDVSVSRQMLATGD 182 (383)
T ss_dssp TCBEEEEEEETTEEEEEEEEETTTEEEEEETTS-CE--------------EEEEECCCCSSCCEEEEEEETTTTEEEEEE
T ss_pred CCceeEEEeCCCCCCEEEEEeCCCEEEEEECCC-Cc--------------eEEEeccCCCCCCeEEEEECCCCCEEEEEC
Confidence 35677777754 4455567889999997541 00 0111111 1122333444455666677
Q ss_pred CCCcEEEEeCCCCCCCCCCCCCcccccceEecccCCCcEEEEEecCC---eEEEEeCCCcEEEEeCC
Q 042844 136 DDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWG---HALAQTEDGKLFGWGYS 199 (372)
Q Consensus 136 ~~g~v~~~G~n~~gqlg~~~~~~~~~~p~~i~~~~~~~i~~I~~g~~---~~~~lt~~g~vy~wG~n 199 (372)
.+|.|+.|-.. ++ . ...+. .....|..++...+ ..+.-..+|.|..|-..
T Consensus 183 ~d~~i~i~d~~--~~--------~---~~~~~-~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~ 235 (383)
T 3ei3_B 183 STGRLLLLGLD--GH--------E---IFKEK-LHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLR 235 (383)
T ss_dssp TTSEEEEEETT--SC--------E---EEEEE-CSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGG
T ss_pred CCCCEEEEECC--CC--------E---EEEec-cCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCC
Confidence 88999998641 10 0 01111 12245777766544 44555678888888754
No 69
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=48.58 E-value=1.4e+02 Score=26.32 Aligned_cols=117 Identities=14% Similarity=0.111 Sum_probs=61.8
Q ss_pred eEEEecCCCceEEE---ecCCcEEEEeCCCCCCCcCCCCCCCCccCCCceeecCCceeEEEEee---cCcEEEEEeCCCc
Q 042844 66 VTSVSAGHYHSLAV---TNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFA---SGVVSSAIGDDGS 139 (372)
Q Consensus 66 i~~I~~G~~h~~~l---t~~G~v~~~G~n~~gqlg~~~~~~~~~~~~p~~i~~~~~~~i~~i~~---g~~~~~~lt~~g~ 139 (372)
..-+++...+..++ ..+|.|+.|-....+.+... .+. +.. ....|.+++. .....+.-+.||.
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~---------~~~-~~~-h~~~V~~~~~~p~~~~~l~s~s~dg~ 105 (402)
T 2aq5_A 37 SGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKN---------VPL-VCG-HTAPVLDIAWCPHNDNVIASGSEDCT 105 (402)
T ss_dssp SCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTT---------CCC-BCC-CSSCEEEEEECTTCTTEEEEEETTSE
T ss_pred CCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCC---------Cce-Eec-CCCCEEEEEeCCCCCCEEEEEeCCCe
Confidence 33466666665554 45899999986554332110 010 111 1123555544 3455666678999
Q ss_pred EEEEeCCCCCCCCCCCCCcccccceEecccCCCcEEEEEecCC---eEEEEeCCCcEEEEeCC
Q 042844 140 LWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWG---HALAQTEDGKLFGWGYS 199 (372)
Q Consensus 140 v~~~G~n~~gqlg~~~~~~~~~~p~~i~~~~~~~i~~I~~g~~---~~~~lt~~g~vy~wG~n 199 (372)
|..|-....+... ....|..........|..++...+ ..+.-..+|.|+.|-..
T Consensus 106 v~vw~~~~~~~~~------~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~ 162 (402)
T 2aq5_A 106 VMVWEIPDGGLVL------PLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVG 162 (402)
T ss_dssp EEEEECCTTCCSS------CBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETT
T ss_pred EEEEEccCCCCcc------ccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECC
Confidence 9999754322110 111121111112346777777644 45555788999999764
No 70
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=47.29 E-value=1.3e+02 Score=25.57 Aligned_cols=111 Identities=13% Similarity=0.114 Sum_probs=58.2
Q ss_pred CCeEEEecCCC-----ceEEEecCCcEEEEeCCCCCCCcCCCCCCCCccCCCceeecCCceeEEEEe--------ecCcE
Q 042844 64 SDVTSVSAGHY-----HSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAF--------ASGVV 130 (372)
Q Consensus 64 ~~i~~I~~G~~-----h~~~lt~~G~v~~~G~n~~gqlg~~~~~~~~~~~~p~~i~~~~~~~i~~i~--------~g~~~ 130 (372)
..|..++.... ..+.-..||.|..|-.....+ ....+.. ....|..+. .....
T Consensus 66 ~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-------------~~~~~~~-~~~~v~~~~~~~~~~~s~~~~~ 131 (357)
T 3i2n_A 66 KPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEM-------------PVYSVKG-HKEIINAIDGIGGLGIGEGAPE 131 (357)
T ss_dssp SCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSS-------------CSEEECC-CSSCEEEEEEESGGGCC-CCCE
T ss_pred CcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCc-------------cEEEEEe-cccceEEEeeccccccCCCccE
Confidence 56788877654 345556789999997543210 0011111 112344442 22335
Q ss_pred EEEEeCCCcEEEEeCCCCCCCCCCCCCcccccceEecccC---CCcEEEEE------ecCCeEEEEeCCCcEEEEeCC
Q 042844 131 SSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALA---GEKIVKVS------FGWGHALAQTEDGKLFGWGYS 199 (372)
Q Consensus 131 ~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~p~~i~~~~---~~~i~~I~------~g~~~~~~lt~~g~vy~wG~n 199 (372)
.+.-+.+|.|..|-...... ....+.... ...+..++ ......++-..+|.|+.|-..
T Consensus 132 l~~~~~d~~i~vwd~~~~~~-----------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~ 198 (357)
T 3i2n_A 132 IVTGSRDGTVKVWDPRQKDD-----------PVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLR 198 (357)
T ss_dssp EEEEETTSCEEEECTTSCSS-----------CSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETT
T ss_pred EEEEeCCCeEEEEeCCCCCC-----------cceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECc
Confidence 56667889999996432110 011111111 22566665 344556666778899998754
No 71
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=47.02 E-value=41 Score=29.10 Aligned_cols=16 Identities=13% Similarity=0.084 Sum_probs=11.8
Q ss_pred CeEEEEeCCCcEEEEeC
Q 042844 182 GHALAQTEDGKLFGWGY 198 (372)
Q Consensus 182 ~~~~~lt~~g~vy~wG~ 198 (372)
.|++++. +++||++|-
T Consensus 91 ~~~~~~~-~~~lyv~GG 106 (315)
T 4asc_A 91 LFGLGEA-LNSIYVVGG 106 (315)
T ss_dssp SCEEEEE-TTEEEEECC
T ss_pred ceeEEEE-CCEEEEEeC
Confidence 4666665 679999985
No 72
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=46.68 E-value=2.3e+02 Score=28.03 Aligned_cols=148 Identities=12% Similarity=0.088 Sum_probs=78.0
Q ss_pred eeEEEEeeCCCcEEEEeCCCCCccCCCCCCCCCCCCccceeecCCCCCCeEEEecCC----CceEEEecCCcEEEEeCCC
Q 042844 17 SRIFMRSASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGH----YHSLAVTNNGAVWAWGRNN 92 (372)
Q Consensus 17 ~~~~~~l~~~g~vy~wG~n~~gqLG~~~~~~~~~~~~~~p~~i~~~~~~i~~I~~G~----~h~~~lt~~G~v~~~G~n~ 92 (372)
...++.-..||.|++|-.... + ......+......|..++... ...+.-+.||.|..|-...
T Consensus 67 ~~~l~s~s~Dg~I~vwd~~~~-~-------------~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~ 132 (753)
T 3jro_A 67 GTILASCSYDGKVLIWKEENG-R-------------WSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKE 132 (753)
T ss_dssp CSEEEEEETTSCEEEEEEETT-E-------------EEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCS
T ss_pred CCEEEEEeCCCeEEEEECCCC-c-------------ccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeec
Confidence 455666677888888854321 0 111122222335677777764 3556667899999997543
Q ss_pred CCCCcCCCCCCCCccCCCceeecCCceeEEEEeec---------------CcEEEEEeCCCcEEEEeCCCCCCCCCCCCC
Q 042844 93 EVQLGRGALESRATWNDPKRVEGLDQVNVCAAFAS---------------GVVSSAIGDDGSLWVWGKSKRGQLGLGKDI 157 (372)
Q Consensus 93 ~gqlg~~~~~~~~~~~~p~~i~~~~~~~i~~i~~g---------------~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~ 157 (372)
... ..+..+.. ....|..+... ....+.-+.||.|+.|-....
T Consensus 133 ~~~------------~~~~~~~~-~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~--------- 190 (753)
T 3jro_A 133 NGT------------TSPIIIDA-HAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSD--------- 190 (753)
T ss_dssp SSC------------CCCEEEEC-CSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETT---------
T ss_pred CCC------------cceeEeec-CCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCC---------
Confidence 211 01111111 11234444332 344566678899999954221
Q ss_pred cccccceEecccCCCcEEEEEecC-----CeEEEEeCCCcEEEEeCCC
Q 042844 158 TEAIVPSRVEALAGEKIVKVSFGW-----GHALAQTEDGKLFGWGYSA 200 (372)
Q Consensus 158 ~~~~~p~~i~~~~~~~i~~I~~g~-----~~~~~lt~~g~vy~wG~n~ 200 (372)
.....+..........|..++... ...+.-..+|.|+.|-...
T Consensus 191 ~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~ 238 (753)
T 3jro_A 191 AQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDN 238 (753)
T ss_dssp TTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESS
T ss_pred cccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCC
Confidence 011111111111234577787764 4566667889999997643
No 73
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=46.61 E-value=1.5e+02 Score=25.95 Aligned_cols=108 Identities=13% Similarity=0.123 Sum_probs=53.9
Q ss_pred CCeEEEecCCCc--eEEEecCCcEEEEeCCCCCCCcCCCCCCCCccCCCceeecC--CceeEEEEeec---CcEEEEEeC
Q 042844 64 SDVTSVSAGHYH--SLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGL--DQVNVCAAFAS---GVVSSAIGD 136 (372)
Q Consensus 64 ~~i~~I~~G~~h--~~~lt~~G~v~~~G~n~~gqlg~~~~~~~~~~~~p~~i~~~--~~~~i~~i~~g---~~~~~~lt~ 136 (372)
..|..++....- .+.-..||.|..|-.... ..+..+ ....|..++.. ....+.-..
T Consensus 140 ~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~-----------------~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~ 202 (357)
T 4g56_B 140 DIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQK-----------------AVLKSYNAHSSEVNCVAACPGKDTIFLSCGE 202 (357)
T ss_dssp SCEEEEEECSSSSEEEEEETTSCEEEEETTTT-----------------EEEEEECCCSSCEEEEEECTTCSSCEEEEET
T ss_pred CCEEEEEECCCCCEEEEEeCCCeEEEEECCCC-----------------cEEEEEcCCCCCEEEEEEccCCCceeeeecc
Confidence 457777665443 334467888999864321 111111 11235555432 234556678
Q ss_pred CCcEEEEeCCCCCCCCCCCCCcccccceEecccCCCcEEEEEecC---CeEEEEeCCCcEEEEeCC
Q 042844 137 DGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGW---GHALAQTEDGKLFGWGYS 199 (372)
Q Consensus 137 ~g~v~~~G~n~~gqlg~~~~~~~~~~p~~i~~~~~~~i~~I~~g~---~~~~~lt~~g~vy~wG~n 199 (372)
||.|..|-.... +. ............+..|+... ...+.-+.++.|+.|-..
T Consensus 203 dg~v~~wd~~~~-~~----------~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~ 257 (357)
T 4g56_B 203 DGRILLWDTRKP-KP----------ATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIK 257 (357)
T ss_dssp TSCEEECCTTSS-SC----------BCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESS
T ss_pred CCceEEEECCCC-ce----------eeeeeeccccccccchhhhhcccceEEEeecccceeEEECC
Confidence 899999843211 00 00000011123466676542 233334678889998653
No 74
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=45.18 E-value=1.4e+02 Score=25.11 Aligned_cols=112 Identities=11% Similarity=0.106 Sum_probs=58.0
Q ss_pred eeEEEEeeCCCcEEEEeCCCCCccCCCCCCCCCCCCccceeecCCCCCCeEEEecCC----CceEEEecCCcEEEEeCCC
Q 042844 17 SRIFMRSASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGH----YHSLAVTNNGAVWAWGRNN 92 (372)
Q Consensus 17 ~~~~~~l~~~g~vy~wG~n~~gqLG~~~~~~~~~~~~~~p~~i~~~~~~i~~I~~G~----~h~~~lt~~G~v~~~G~n~ 92 (372)
.+.++.-..||.|.+|-...... .......+..-...|..++... ...+.-..||.|..|-...
T Consensus 23 ~~~l~~~~~dg~i~iw~~~~~~~------------~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~ 90 (351)
T 3f3f_A 23 GRHVATCSSDQHIKVFKLDKDTS------------NWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDP 90 (351)
T ss_dssp SSEEEEEETTSEEEEEEECSSSC------------CEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECT
T ss_pred CCEEEEeeCCCeEEEEECCCCCC------------cceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCC
Confidence 34555666788888885432100 1111122223345688888753 4445567899999998543
Q ss_pred CCCCcCCCCCCCCccCCCceeecCCceeEEEEeec----CcEEEEEeCCCcEEEEeCC
Q 042844 93 EVQLGRGALESRATWNDPKRVEGLDQVNVCAAFAS----GVVSSAIGDDGSLWVWGKS 146 (372)
Q Consensus 93 ~gqlg~~~~~~~~~~~~p~~i~~~~~~~i~~i~~g----~~~~~~lt~~g~v~~~G~n 146 (372)
........ . ..+..........|..++.. ....+.-+.+|.|+.|-..
T Consensus 91 ~~~~~~~~-----~-~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~ 142 (351)
T 3f3f_A 91 DQEECSGR-----R-WNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDAL 142 (351)
T ss_dssp TSCTTSSC-----S-EEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECS
T ss_pred Cccccccc-----C-cceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCC
Confidence 22110000 0 01111111112345555554 4456777889999999654
No 75
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=44.17 E-value=1.5e+02 Score=25.18 Aligned_cols=17 Identities=6% Similarity=-0.146 Sum_probs=12.0
Q ss_pred CCeEEEEeCCCcEEEEeC
Q 042844 181 WGHALAQTEDGKLFGWGY 198 (372)
Q Consensus 181 ~~~~~~lt~~g~vy~wG~ 198 (372)
..|++++. +++||++|-
T Consensus 239 ~~~~~~~~-~~~i~v~GG 255 (306)
T 3ii7_A 239 VTVKCAAV-GSIVYVLAG 255 (306)
T ss_dssp SCCEEEEE-TTEEEEEEC
T ss_pred cceeEEEE-CCEEEEEeC
Confidence 34555555 679999985
No 76
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=43.88 E-value=1.4e+02 Score=24.95 Aligned_cols=13 Identities=38% Similarity=0.797 Sum_probs=10.7
Q ss_pred EEEEeCCCcEEEE
Q 042844 131 SSAIGDDGSLWVW 143 (372)
Q Consensus 131 ~~~lt~~g~v~~~ 143 (372)
.++++.+|++|..
T Consensus 119 ~i~~d~~G~l~vt 131 (296)
T 3e5z_A 119 DVCLAPDGSLWFS 131 (296)
T ss_dssp CEEECTTSCEEEE
T ss_pred CEEECCCCCEEEE
Confidence 4788899999985
No 77
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=42.93 E-value=1.8e+02 Score=25.91 Aligned_cols=139 Identities=12% Similarity=0.104 Sum_probs=70.9
Q ss_pred EEEeeCCCcEEEEeCCCCCccCCCCCCCCCCCCccceeecCCCCCCeEEEecCCC--ceEEEecCCcEEEEeCCCCCCCc
Q 042844 20 FMRSASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHY--HSLAVTNNGAVWAWGRNNEVQLG 97 (372)
Q Consensus 20 ~~~l~~~g~vy~wG~n~~gqLG~~~~~~~~~~~~~~p~~i~~~~~~i~~I~~G~~--h~~~lt~~G~v~~~G~n~~gqlg 97 (372)
+++..-|+.||+|-... |+ ......+..-...|..|+.... +.+.-+.||.|..|-......+.
T Consensus 118 ~lAvgld~tV~lWd~~t-g~-------------~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~ 183 (420)
T 4gga_A 118 VLAVALDNSVYLWSASS-GD-------------ILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLR 183 (420)
T ss_dssp EEEEEETTEEEEEETTT-CC-------------EEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEE
T ss_pred EEEEEeCCEEEEEECCC-CC-------------EEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEE
Confidence 44555689999996432 11 1111222222235777776543 33445688999999754321110
Q ss_pred CCCCCCCCccCCCceeecCCceeEEEEeecCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccccceEecccCCCcEEEE
Q 042844 98 RGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKV 177 (372)
Q Consensus 98 ~~~~~~~~~~~~p~~i~~~~~~~i~~i~~g~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~p~~i~~~~~~~i~~I 177 (372)
.+. .....+..++......+.-..++.++.|-..... ... ..+.. ....+..+
T Consensus 184 --------------~~~-~h~~~v~~~s~~~~~l~sgs~d~~i~~~d~~~~~----------~~~-~~~~~-h~~~~~~~ 236 (420)
T 4gga_A 184 --------------NMT-SHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAE----------HHV-ATLSG-HSQEVCGL 236 (420)
T ss_dssp --------------EEC-CCSSCEEEEEEETTEEEEEETTSEEEEEETTSSS----------CEE-EEEEC-CSSCEEEE
T ss_pred --------------EEe-CCCCceEEEeeCCCEEEEEeCCCceeEeeecccc----------eee-EEecc-cccceeee
Confidence 111 1123456666666666666778888888532211 000 01111 11223333
Q ss_pred Ee--cCCeEEEEeCCCcEEEEeCC
Q 042844 178 SF--GWGHALAQTEDGKLFGWGYS 199 (372)
Q Consensus 178 ~~--g~~~~~~lt~~g~vy~wG~n 199 (372)
.. .....+....+|.+..|-..
T Consensus 237 ~~~~~g~~l~s~~~D~~v~i~~~~ 260 (420)
T 4gga_A 237 RWAPDGRHLASGGNDNLVNVWPSA 260 (420)
T ss_dssp EECTTSSEEEEEETTSCEEEEESS
T ss_pred eecCCCCeeeeeeccccceEEeec
Confidence 33 34456666788888888754
No 78
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=42.44 E-value=1.7e+02 Score=25.50 Aligned_cols=28 Identities=21% Similarity=0.359 Sum_probs=18.8
Q ss_pred CcEEEEEecCC-eEEEEeCCCcEEEEeCC
Q 042844 172 EKIVKVSFGWG-HALAQTEDGKLFGWGYS 199 (372)
Q Consensus 172 ~~i~~I~~g~~-~~~~lt~~g~vy~wG~n 199 (372)
..|..++...+ ..++...+|.|+.|-..
T Consensus 290 ~~i~~~~~~~~~~l~~~~~d~~i~i~d~~ 318 (425)
T 1r5m_A 290 QSIVSASWVGDDKVISCSMDGSVRLWSLK 318 (425)
T ss_dssp SCEEEEEEETTTEEEEEETTSEEEEEETT
T ss_pred ccEEEEEECCCCEEEEEeCCCcEEEEECC
Confidence 35666666544 56666788888888753
No 79
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=42.39 E-value=1.8e+02 Score=25.55 Aligned_cols=30 Identities=27% Similarity=0.417 Sum_probs=19.7
Q ss_pred CCCeEEEecC---CCceEEEecCCcEEEEeCCC
Q 042844 63 PSDVTSVSAG---HYHSLAVTNNGAVWAWGRNN 92 (372)
Q Consensus 63 ~~~i~~I~~G---~~h~~~lt~~G~v~~~G~n~ 92 (372)
...|..++.. ....+.-..||.|+.|-...
T Consensus 113 ~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~ 145 (416)
T 2pm9_A 113 SSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNK 145 (416)
T ss_dssp SSCCCEEEECSSSTTBEEEECSSSCEEBCBTTT
T ss_pred ccceEEEEEcCCCCCEEEEEcCCCeEEEEECCC
Confidence 3467777765 34445556789999997544
No 80
>3p6j_A De novo designed beta-trefoil architecture with S primary structure; de novo protein; 1.35A {Synthetic}
Probab=42.38 E-value=1.1e+02 Score=23.35 Aligned_cols=108 Identities=13% Similarity=-0.001 Sum_probs=58.3
Q ss_pred CCeEEEecCC-CceEEEecCCcEEEEeCCCCCCCcCCCCCCCCccCCCceeecCCceeEEEEeec-CcEEEEEeCCCcEE
Q 042844 64 SDVTSVSAGH-YHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFAS-GVVSSAIGDDGSLW 141 (372)
Q Consensus 64 ~~i~~I~~G~-~h~~~lt~~G~v~~~G~n~~gqlg~~~~~~~~~~~~p~~i~~~~~~~i~~i~~g-~~~~~~lt~~g~v~ 141 (372)
.+.+++-|-. .+.+-+..||.|-.-..... ...--.+... ...++.|.|- ....++++.+|+||
T Consensus 30 ~~~~~LYcr~~g~~LqI~~dG~V~Gt~~~~~-------------~~s~lei~sv-~~G~V~L~g~~sg~yL~mn~~G~l~ 95 (142)
T 3p6j_A 30 NGEVLLKSTETGQYLRINPDGTVDGTRDRSD-------------THIQFQISPE-GNGEVLLKSTETGQYLRINPDGTVD 95 (142)
T ss_dssp TTCEEEEETTTCCEEEECTTSBEEEECCTTC-------------GGGCEEEEEE-ETTEEEEEETTTTEEEEECTTSBEE
T ss_pred CcEEEEEEeCCCEEEEECCCCCEeeecCCCC-------------CceEEEEEEc-cCCEEEEEEecCCEEEeECCCCCEe
Confidence 4688888876 67778889999987643210 0111111111 1134555543 45678999999999
Q ss_pred EEeCCCCCCCCCCCCCcccccceEecccCCCcEEEEEecCCeEEEEeCCCcEEEE
Q 042844 142 VWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGW 196 (372)
Q Consensus 142 ~~G~n~~gqlg~~~~~~~~~~p~~i~~~~~~~i~~I~~g~~~~~~lt~~g~vy~w 196 (372)
.--. . .......-......-...|..+..| .-+|++++|++|.-
T Consensus 96 Gs~~--~-------t~ecsflEi~~en~y~v~i~g~~sg--~YLamnk~Grlygs 139 (142)
T 3p6j_A 96 GTRD--R-------SDTHIQFQISPEGNGEVLLKSTETG--QYLRINPDGTVDGT 139 (142)
T ss_dssp EECC--T-------TCGGGCEEEEECSTTCEEEEETTTC--CEEEECTTSBEEEE
T ss_pred eccc--C-------CCCceEEEEEeecCcEEEEEEecCC--EEEEECCCcCCccC
Confidence 6421 1 1011111111112222234444444 48899999999963
No 81
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=39.52 E-value=1.9e+02 Score=25.10 Aligned_cols=146 Identities=10% Similarity=0.052 Sum_probs=75.0
Q ss_pred eeEEEEeeCCCcEEEEeCCCCCccCCCCCCCCCCCCcccee-ec-----CCCCCCeEEEecC---CCceEEEecCCcEEE
Q 042844 17 SRIFMRSASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPT-RV-----PGLPSDVTSVSAG---HYHSLAVTNNGAVWA 87 (372)
Q Consensus 17 ~~~~~~l~~~g~vy~wG~n~~gqLG~~~~~~~~~~~~~~p~-~i-----~~~~~~i~~I~~G---~~h~~~lt~~G~v~~ 87 (372)
...++.-..||.|.+|-......... ....+. .+ ......|..++.. ....+.-..||.|..
T Consensus 56 ~~~l~~~~~dg~i~iw~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~i 126 (408)
T 4a11_B 56 GRYMLSGGSDGVIVLYDLENSSRQSY---------YTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTLKV 126 (408)
T ss_dssp CCEEEEEETTSCEEEEECCCCSSSSC---------EEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEETTSEEEE
T ss_pred CCEEEEEcCCCeEEEEECCCCcccce---------EeccccccccccccccCCCcEEEEEEccCCCcEEEEEeCCCeEEE
Confidence 45566667788888886543221111 000000 00 1122467777764 345566677999999
Q ss_pred EeCCCCCCCcCCCCCCCCccCCCceeecCCceeEEEEeec-----CcEEEEEeCCCcEEEEeCCCCCCCCCCCCCccccc
Q 042844 88 WGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFAS-----GVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIV 162 (372)
Q Consensus 88 ~G~n~~gqlg~~~~~~~~~~~~p~~i~~~~~~~i~~i~~g-----~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~ 162 (372)
|-...... ...+.... .+..+... ....++-+.+|.|+.|-..... .
T Consensus 127 wd~~~~~~--------------~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~------------~ 178 (408)
T 4a11_B 127 WDTNTLQT--------------ADVFNFEE--TVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGS------------C 178 (408)
T ss_dssp EETTTTEE--------------EEEEECSS--CEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSC------------C
T ss_pred eeCCCCcc--------------ceeccCCC--ceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcc------------e
Confidence 97432110 01111111 22222222 1256666788999999653211 0
Q ss_pred ceEecccCCCcEEEEEecCCe---EEEEeCCCcEEEEeCCC
Q 042844 163 PSRVEALAGEKIVKVSFGWGH---ALAQTEDGKLFGWGYSA 200 (372)
Q Consensus 163 p~~i~~~~~~~i~~I~~g~~~---~~~lt~~g~vy~wG~n~ 200 (372)
...+. .....|..++...+. .+.-..+|.|+.|-...
T Consensus 179 ~~~~~-~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~ 218 (408)
T 4a11_B 179 SHILQ-GHRQEILAVSWSPRYDYILATASADSRVKLWDVRR 218 (408)
T ss_dssp CEEEC-CCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTC
T ss_pred eeeec-CCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCC
Confidence 11111 112357777665442 55667889999998643
No 82
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=38.62 E-value=2e+02 Score=25.21 Aligned_cols=197 Identities=12% Similarity=0.006 Sum_probs=0.0
Q ss_pred CCceEEEecCCcEEEEeCCCCCCCcCCCCCCCCccCCCceeecCCceeEEEEeecCcEEEEEeCCCcEEEEeCCCCCCCC
Q 042844 73 HYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLG 152 (372)
Q Consensus 73 ~~h~~~lt~~G~v~~~G~n~~gqlg~~~~~~~~~~~~p~~i~~~~~~~i~~i~~g~~~~~~lt~~g~v~~~G~n~~gqlg 152 (372)
....+.+|.+|.+=.--...+...+..... +..-+.......+.+..+.+++|+.|++|..-...--..+
T Consensus 5 e~~~v~lT~~G~IKr~~~~~~~~~~~~~~~----------lke~D~l~~~~~~~t~d~ll~fT~~Gr~~~~~~~elp~~~ 74 (323)
T 1wp5_A 5 EDVIVTVTKDGYVKRTSLRSYAASNGQDFA----------MKDTDRLLAMLEMNTKDVLLLFTNKGNYLYCPVHELPDIR 74 (323)
T ss_dssp CEEEEEEETTCEEEEEEHHHHHHTTTCCCC----------CCTTCCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCC
T ss_pred CcEEEEEeCCCEEEEeEHHHhhhcCccccc----------cCCCCEEEEEEEECCCCEEEEEECCCEEEEEEHHHCcCCC
Q ss_pred CCCCCcccccceEecccCCCcEEEEEecCC-----eEEEEeCCCcEEEEeCCCCCCCC--CCCCCCcCCCCCCCcCCCCC
Q 042844 153 LGKDITEAIVPSRVEALAGEKIVKVSFGWG-----HALAQTEDGKLFGWGYSADGRIG--NLGKALESSPLDSNIDRSSE 225 (372)
Q Consensus 153 ~~~~~~~~~~p~~i~~~~~~~i~~I~~g~~-----~~~~lt~~g~vy~wG~n~~gqlg--~~~~~~~~~~~~~~~~~~~~ 225 (372)
....-.+ ....+..-++++|+.+..-.. ..+++|++|.+.-.-...+-... .+
T Consensus 75 r~a~G~~--i~~~i~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~iKrt~l~e~~~~~r~~G------------------ 134 (323)
T 1wp5_A 75 WKDLGQH--IANIIPIDRDEEIIKAIPINDFELNGYFLFVTRNGMVKKTELKHYKAQRYSKP------------------ 134 (323)
T ss_dssp TTSCCEE--GGGTSCCCTTCCEEEEEEESCTTSSCEEEEEETTSEEEEEEGGGGCCSCCSSC------------------
T ss_pred CCCCCcC--hhhccCCCCCCEEEEEEEecccCCCceEEEEeCCCeEEEeEHHHhhhccccCc------------------
Q ss_pred CccccchhhHHHhhhhhhcccccccCCCceeceeeec---CccEEEEEe--cCCeeEEEecCCCEEEEeCCCCCccCCCC
Q 042844 226 SDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVE---GVEVVDIAC--GFDHSLVLGRNGVLLSCGSNVYGQLGREK 300 (372)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~---~~~i~~I~~--G~~h~~alt~~G~vy~wG~n~~gqlG~~~ 300 (372)
-..+. ...++.+.. +.++.+++|++|+++.+-.++--.+|-..
T Consensus 135 --------------------------------~~ai~l~e~d~lv~~~~~~~~~~i~l~T~~G~~irf~~~ev~~~gR~a 182 (323)
T 1wp5_A 135 --------------------------------LTGINLKNDDQVVDVHLTDGMNELFLVTHNGYALWFDESEVSIVGVRA 182 (323)
T ss_dssp --------------------------------EECSCCCTTCCEEEEEEECSCSEEEEEETTSEEEEEEGGGSCBCCSSC
T ss_pred --------------------------------eEEEEeCCCCEEEEEEEeCCCCEEEEEeCCCcEEEEEHHHCcccCCCC
Q ss_pred CCCcccceeeccccEEEec--CCC-ceEEEEeeccccccCCCc
Q 042844 301 QDMGMFPVDINFHPVSISS--GLG-HSLAICEVRSSNVTGGAR 340 (372)
Q Consensus 301 ~~~~~~P~~v~~~i~~ia~--G~~-~s~~l~~~~~~~~~~~~g 340 (372)
.-.......-...|+.+.. ... ..+++++ .|
T Consensus 183 ~GV~~i~L~~~d~Vv~~~~~~~~~~~ll~vt~---------~G 216 (323)
T 1wp5_A 183 AGVKGMNLKEGDYIVSGQLITSKDESIVVATQ---------RG 216 (323)
T ss_dssp CCEECCCCCTTCCEEEEEEECCTTCEEEEEET---------TS
T ss_pred cCEEEEEeCCCCEEEEEEEEcCCCcEEEEEEC---------CC
No 83
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=37.96 E-value=1.9e+02 Score=24.65 Aligned_cols=17 Identities=18% Similarity=0.261 Sum_probs=11.9
Q ss_pred CceEEEecCCcEEEEeCC
Q 042844 74 YHSLAVTNNGAVWAWGRN 91 (372)
Q Consensus 74 ~h~~~lt~~G~v~~~G~n 91 (372)
.|++++ -+++||.+|-.
T Consensus 141 ~~~~~~-~~~~iyv~GG~ 157 (315)
T 4asc_A 141 GHTVLS-HMDLVYVIGGK 157 (315)
T ss_dssp SCEEEE-ETTEEEEECCB
T ss_pred ceeEEE-ECCEEEEEeCC
Confidence 455554 67889999954
No 84
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=34.85 E-value=2.3e+02 Score=24.63 Aligned_cols=166 Identities=9% Similarity=-0.028 Sum_probs=78.9
Q ss_pred eeeeeeEEEEeeCCCcEEEEeCCCCCccCCCCCCCCCCCCccceeecCCCCCCeEEEecCCC---------ceEEEecCC
Q 042844 13 NVLTSRIFMRSASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHY---------HSLAVTNNG 83 (372)
Q Consensus 13 ~~~~~~~~~~l~~~g~vy~wG~n~~gqLG~~~~~~~~~~~~~~p~~i~~~~~~i~~I~~G~~---------h~~~lt~~G 83 (372)
++.....++.-..||.|++|-...... . ........+..-...|..++.... +.+....||
T Consensus 22 ~~~~~~~l~s~~~dg~i~iw~~~~~~~----~------~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg 91 (397)
T 1sq9_A 22 VSACNSFTVSCSGDGYLKVWDNKLLDN----E------NPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSG 91 (397)
T ss_dssp EEECSSEEEEEETTSEEEEEESBCCTT----C------CGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTS
T ss_pred EEecCCeEEEEcCCCEEEEEECCCccc----c------cCCCcceEEecCCCcEEEEEEecccccCCccccEEEEEcCCC
Confidence 334446777778899999997643210 0 011122233333346777766543 444456789
Q ss_pred cEEEEeCCCCCCCcCCCCCCCCccCCCceeecCC----ceeEEEEeec------CcE-EEEEeCCCcEEEEeCCCCCCCC
Q 042844 84 AVWAWGRNNEVQLGRGALESRATWNDPKRVEGLD----QVNVCAAFAS------GVV-SSAIGDDGSLWVWGKSKRGQLG 152 (372)
Q Consensus 84 ~v~~~G~n~~gqlg~~~~~~~~~~~~p~~i~~~~----~~~i~~i~~g------~~~-~~~lt~~g~v~~~G~n~~gqlg 152 (372)
.|+.|-...... . .......+.... ...|..++.. ... .+.-+.+|.|+.|-......-.
T Consensus 92 ~i~iw~~~~~~~------~---~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 162 (397)
T 1sq9_A 92 DLLFYRITREDE------T---KKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADES 162 (397)
T ss_dssp CEEEEEEEECTT------T---CCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHH
T ss_pred CEEEEEccCCcc------c---ccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCcccccc
Confidence 999996432211 0 000011111111 1244444444 444 5666788999999653300000
Q ss_pred CCCCCcccccce-Eec------ccCCCcEEEEEecCC-eEEEEeCCCcEEEEeCC
Q 042844 153 LGKDITEAIVPS-RVE------ALAGEKIVKVSFGWG-HALAQTEDGKLFGWGYS 199 (372)
Q Consensus 153 ~~~~~~~~~~p~-~i~------~~~~~~i~~I~~g~~-~~~~lt~~g~vy~wG~n 199 (372)
.+. .....|. .+. ......|..++...+ ..++-..+|.|+.|-..
T Consensus 163 ~~~--~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~i~d~~ 215 (397)
T 1sq9_A 163 NSL--TLNWSPTLELQGTVESPMTPSQFATSVDISERGLIATGFNNGTVQISELS 215 (397)
T ss_dssp HHT--TTCCCCEEEEEEEECCSSSSCCCCCEEEECTTSEEEEECTTSEEEEEETT
T ss_pred ccc--eeeccCcceeeeeeccccCCCCCceEEEECCCceEEEEeCCCcEEEEECC
Confidence 000 0001111 111 112234556655433 44455677888888764
No 85
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=32.09 E-value=2.1e+02 Score=23.54 Aligned_cols=16 Identities=13% Similarity=0.406 Sum_probs=11.9
Q ss_pred EEEEEeCCCcEEEEeC
Q 042844 130 VSSAIGDDGSLWVWGK 145 (372)
Q Consensus 130 ~~~~lt~~g~v~~~G~ 145 (372)
..++++.+|++|+...
T Consensus 210 ~~i~~d~~G~l~v~~~ 225 (286)
T 1q7f_A 210 IGVGINSNGEILIADN 225 (286)
T ss_dssp EEEEECTTCCEEEEEC
T ss_pred cEEEECCCCCEEEEeC
Confidence 4677888888887664
No 86
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=30.82 E-value=2.6e+02 Score=24.18 Aligned_cols=126 Identities=17% Similarity=0.189 Sum_probs=68.8
Q ss_pred EecCCCceEEEecCCcEEEEeCCCCCCCcCCCCCCCCccCCCceeecCCceeEEEEee-----cCcEEEEEeCCCcEEEE
Q 042844 69 VSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFA-----SGVVSSAIGDDGSLWVW 143 (372)
Q Consensus 69 I~~G~~h~~~lt~~G~v~~~G~n~~gqlg~~~~~~~~~~~~p~~i~~~~~~~i~~i~~-----g~~~~~~lt~~g~v~~~ 143 (372)
++....+.+++|+.|++|..-...-...+....- . +....++..++.+|+.+.. .....+++|++|.+.-.
T Consensus 49 ~~~~~~~ll~fT~~G~~~~~~~~elp~~~~~a~G---~-~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt 124 (307)
T 1zi0_A 49 VANTHDHILCFSSRGRVYSMKVYQLPEATRGARG---R-PIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKT 124 (307)
T ss_dssp EEETTCEEEEEETTSEEEEEEGGGSCCCCSSSCC---E-EGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEE
T ss_pred EECCCCEEEEEECCCEEEEEEhhHCcCCCCCCCC---e-EhhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEE
Confidence 4556677889999999999886543333221100 0 0001122223445665543 23357788999988876
Q ss_pred eCCCCCCCCCCCCCcccccceE-ecccCCCcEEEE--EecCCeEEEEeCCCcEEEEeCCCCCCCCC
Q 042844 144 GKSKRGQLGLGKDITEAIVPSR-VEALAGEKIVKV--SFGWGHALAQTEDGKLFGWGYSADGRIGN 206 (372)
Q Consensus 144 G~n~~gqlg~~~~~~~~~~p~~-i~~~~~~~i~~I--~~g~~~~~~lt~~g~vy~wG~n~~gqlg~ 206 (372)
-...+-... ..... +....+..++.+ +.+.++.+++|++|+++-+-...--.+|+
T Consensus 125 ~l~e~~~~~--------r~G~~~i~l~~~d~lv~~~~~~~~~~i~l~T~~G~~irf~~~~v~~~gr 182 (307)
T 1zi0_A 125 VLTEFNRLR--------TAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGC 182 (307)
T ss_dssp EGGGGTTCC--------TTCEESSCCCTTCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCT
T ss_pred EHHHhhccc--------cCCeEEEEECCCCEEEEEEEeCCCCEEEEECCCCcEEEEEHHHcCccCC
Confidence 543321110 00101 111123444443 34667899999999999988765555554
No 87
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=30.78 E-value=2.7e+02 Score=24.23 Aligned_cols=108 Identities=11% Similarity=0.121 Sum_probs=55.8
Q ss_pred CCeEEEecCC---CceEEEecCCcEEEEeCCCCCCCcCCCCCCCCccCCCceee-cCCceeEEEEeec---CcEEEEEeC
Q 042844 64 SDVTSVSAGH---YHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVE-GLDQVNVCAAFAS---GVVSSAIGD 136 (372)
Q Consensus 64 ~~i~~I~~G~---~h~~~lt~~G~v~~~G~n~~gqlg~~~~~~~~~~~~p~~i~-~~~~~~i~~i~~g---~~~~~~lt~ 136 (372)
..|..|+... ...+.-..||.|..|-......+.. +. ......+..++.. ....+.-+.
T Consensus 182 ~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~--------------~~~~~~~~~v~~v~~sp~~~~~la~g~~ 247 (357)
T 4g56_B 182 SEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATR--------------IDFCASDTIPTSVTWHPEKDDTFACGDE 247 (357)
T ss_dssp SCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCB--------------CCCTTCCSCEEEEEECTTSTTEEEEEES
T ss_pred CCEEEEEEccCCCceeeeeccCCceEEEECCCCceeee--------------eeeccccccccchhhhhcccceEEEeec
Confidence 4677776532 3345567889999985432111100 00 0112234455443 233334467
Q ss_pred CCcEEEEeCCCCCCCCCCCCCcccccceEecccCCCcEEEEEecC---CeEEEEeCCCcEEEEeC
Q 042844 137 DGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGW---GHALAQTEDGKLFGWGY 198 (372)
Q Consensus 137 ~g~v~~~G~n~~gqlg~~~~~~~~~~p~~i~~~~~~~i~~I~~g~---~~~~~lt~~g~vy~wG~ 198 (372)
++.|+.|-... ......+. .....|..++... ...+.-..||.|+.|-.
T Consensus 248 d~~i~~wd~~~------------~~~~~~~~-~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~ 299 (357)
T 4g56_B 248 TGNVSLVNIKN------------PDSAQTSA-VHSQNITGLAYSYHSSPFLASISEDCTVAVLDA 299 (357)
T ss_dssp SSCEEEEESSC------------GGGCEEEC-CCSSCEEEEEECSSSSCCEEEEETTSCEEEECT
T ss_pred ccceeEEECCC------------CcEeEEEe-ccceeEEEEEEcCCCCCEEEEEeCCCEEEEEEC
Confidence 88999985321 01111111 2234677887643 33445678899999954
No 88
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=30.58 E-value=2.4e+02 Score=23.60 Aligned_cols=109 Identities=19% Similarity=0.188 Sum_probs=53.4
Q ss_pred CCeEEEecCCC--ceEEEecCCcEEEEeCCCCCCCcCCCCCCCCccCCCceeecCCceeEEEEee--cCcEEEEEeCCCc
Q 042844 64 SDVTSVSAGHY--HSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFA--SGVVSSAIGDDGS 139 (372)
Q Consensus 64 ~~i~~I~~G~~--h~~~lt~~G~v~~~G~n~~gqlg~~~~~~~~~~~~p~~i~~~~~~~i~~i~~--g~~~~~~lt~~g~ 139 (372)
..|..++.... ..+.-..||.|..|-......+ ..+.. ....|..+.. .....+.-+.||.
T Consensus 108 ~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~--------------~~~~~-~~~~v~~~~~~~~~~~l~~~~~d~~ 172 (312)
T 4ery_A 108 NYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCL--------------KTLPA-HSDPVSAVHFNRDGSLIVSSSYDGL 172 (312)
T ss_dssp SCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEE--------------EEECC-CSSCEEEEEECTTSSEEEEEETTSC
T ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEE--------------EEecC-CCCcEEEEEEcCCCCEEEEEeCCCc
Confidence 34555554443 3344567888998864321110 01111 1113333333 3344556677888
Q ss_pred EEEEeCCCCCCCCCCCCCcccccceEecccCCCcEEEEEec--CCeEEEEeCCCcEEEEeCC
Q 042844 140 LWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFG--WGHALAQTEDGKLFGWGYS 199 (372)
Q Consensus 140 v~~~G~n~~gqlg~~~~~~~~~~p~~i~~~~~~~i~~I~~g--~~~~~~lt~~g~vy~wG~n 199 (372)
|..|-..... ....+.......+..++.. ..+.++-+.+|.|..|-..
T Consensus 173 i~~wd~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~ 222 (312)
T 4ery_A 173 CRIWDTASGQ------------CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYS 222 (312)
T ss_dssp EEEEETTTCC------------EEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETT
T ss_pred EEEEECCCCc------------eeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECC
Confidence 8888542210 0011111112335444443 4456667788899999754
No 89
>1zvt_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 1.70A {Escherichia coli}
Probab=29.53 E-value=2.5e+02 Score=23.59 Aligned_cols=123 Identities=11% Similarity=0.007 Sum_probs=67.4
Q ss_pred ecCCCceEEEecCCcEEEEeCCCCCCCcCCCCCCCCccCCCceeecCCceeEEEEeec--CcEEEEEeCCCcEEEEeCCC
Q 042844 70 SAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFAS--GVVSSAIGDDGSLWVWGKSK 147 (372)
Q Consensus 70 ~~G~~h~~~lt~~G~v~~~G~n~~gqlg~~~~~~~~~~~~p~~i~~~~~~~i~~i~~g--~~~~~~lt~~g~v~~~G~n~ 147 (372)
+....+.+++|+.|++|..-....-.. . .. .. +....++..++.+|+.+... ..+.+++|++|.+.-.-...
T Consensus 41 ~~t~~~ll~~T~~Gr~~~~~~~elp~~-r--~~--G~-~i~~~i~L~~~e~Iv~~~~~~~~~~lll~T~~G~~Kr~~~~e 114 (256)
T 1zvt_A 41 GKSNQPVVFVDSTGRSYAIDPITLPSA-R--GQ--GE-PLTGKLTLPPGATVDHMLMESDDQKLLMASDAGYGFVCTFND 114 (256)
T ss_dssp EETTSCEEEEETTSEEEEECGGGSCCS-S--SC--CE-EGGGTCCCCTTCCEEEEECCCTTCEEEEEBTTSEEEEEEGGG
T ss_pred eCCCCEEEEEeCCCeEEEEEHHHCCCc-C--CC--Ce-EeeeeecCCCCCEEEEEEEeCCCCEEEEEeCCCeEEEeEHHH
Confidence 345567799999999999976542111 0 00 00 00012222234466666552 34577889999888776544
Q ss_pred CCCCCCCCCCcccccceEeccc-CCCcEEEE--E-ecCCeEEEEeCCCcEEEEeCCCCCCCCC
Q 042844 148 RGQLGLGKDITEAIVPSRVEAL-AGEKIVKV--S-FGWGHALAQTEDGKLFGWGYSADGRIGN 206 (372)
Q Consensus 148 ~gqlg~~~~~~~~~~p~~i~~~-~~~~i~~I--~-~g~~~~~~lt~~g~vy~wG~n~~gqlg~ 206 (372)
+-....+ -..+..+ .+.+++.+ . .+.++.+++|++|++.-+-.+..-.+|+
T Consensus 115 ~~~~~r~--------G~~~i~L~~~d~lv~~~~~~~~~~~i~l~T~~G~~lrf~~~ei~~~gR 169 (256)
T 1zvt_A 115 LVARNRA--------GKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLSK 169 (256)
T ss_dssp GCCCSTT--------CEECBCCCTTCCBCCCEECCCTTCEEEEEETTSEEEEEEGGGSCBCSS
T ss_pred hcccCcC--------ceEEEEECCCCEEEEEEEecCCCCEEEEEcCCCeEEEEEHHHCCCcCc
Confidence 3111000 0011111 12233332 2 3577899999999999888776555555
No 90
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=28.66 E-value=3.1e+02 Score=24.31 Aligned_cols=69 Identities=16% Similarity=0.120 Sum_probs=36.2
Q ss_pred CCeEEEecCCCceEEEecCCcEEEEeCCCCCCCcCCCCCCCCccCCCceee-cCCceeEEEEeecCcEEEEEeCCCcEEE
Q 042844 64 SDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVE-GLDQVNVCAAFASGVVSSAIGDDGSLWV 142 (372)
Q Consensus 64 ~~i~~I~~G~~h~~~lt~~G~v~~~G~n~~gqlg~~~~~~~~~~~~p~~i~-~~~~~~i~~i~~g~~~~~~lt~~g~v~~ 142 (372)
..+..++......+.-..|+.++.|-...... ....+. .................+....||.+..
T Consensus 190 ~~v~~~s~~~~~l~sgs~d~~i~~~d~~~~~~-------------~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i 256 (420)
T 4gga_A 190 ARVGSLSWNSYILSSGSRSGHIHHHDVRVAEH-------------HVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNV 256 (420)
T ss_dssp SCEEEEEEETTEEEEEETTSEEEEEETTSSSC-------------EEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred CceEEEeeCCCEEEEEeCCCceeEeeecccce-------------eeEEecccccceeeeeecCCCCeeeeeeccccceE
Confidence 45666666665555566777777775322110 000111 1112223333334455666778899988
Q ss_pred EeC
Q 042844 143 WGK 145 (372)
Q Consensus 143 ~G~ 145 (372)
|-.
T Consensus 257 ~~~ 259 (420)
T 4gga_A 257 WPS 259 (420)
T ss_dssp EES
T ss_pred Eee
Confidence 865
No 91
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=28.63 E-value=3e+02 Score=24.20 Aligned_cols=26 Identities=19% Similarity=0.111 Sum_probs=14.5
Q ss_pred CeEEEecCCCceEE--EecCCcEEEEeC
Q 042844 65 DVTSVSAGHYHSLA--VTNNGAVWAWGR 90 (372)
Q Consensus 65 ~i~~I~~G~~h~~~--lt~~G~v~~~G~ 90 (372)
.|..++......++ -..+|.|+.|-.
T Consensus 171 ~v~~~~~~~~~~~~~s~~~d~~v~~~d~ 198 (433)
T 3bws_A 171 FVETISIPEHNELWVSQMQANAVHVFDL 198 (433)
T ss_dssp EEEEEEEGGGTEEEEEEGGGTEEEEEET
T ss_pred ceeEEEEcCCCEEEEEECCCCEEEEEEC
Confidence 46566653333333 335688888864
No 92
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=27.94 E-value=2.5e+02 Score=23.59 Aligned_cols=17 Identities=24% Similarity=0.233 Sum_probs=11.9
Q ss_pred CceEEEecCCcEEEEeCC
Q 042844 74 YHSLAVTNNGAVWAWGRN 91 (372)
Q Consensus 74 ~h~~~lt~~G~v~~~G~n 91 (372)
.|++++ -++.||.+|-.
T Consensus 54 ~~~~~~-~~~~lyv~GG~ 70 (302)
T 2xn4_A 54 RAGMVY-MAGLVFAVGGF 70 (302)
T ss_dssp SCEEEE-ETTEEEEESCB
T ss_pred cceEEE-ECCEEEEEeCc
Confidence 455554 48899999943
No 93
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=27.38 E-value=3.1e+02 Score=23.82 Aligned_cols=139 Identities=12% Similarity=0.080 Sum_probs=65.8
Q ss_pred eEEEEeeCCCcEEEEeCCCCCccCCCCCCCCCCCCccce-eecCCCCCCeEEEecCCC--ceEEEecCCcEEEEeCCCCC
Q 042844 18 RIFMRSASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEP-TRVPGLPSDVTSVSAGHY--HSLAVTNNGAVWAWGRNNEV 94 (372)
Q Consensus 18 ~~~~~l~~~g~vy~wG~n~~gqLG~~~~~~~~~~~~~~p-~~i~~~~~~i~~I~~G~~--h~~~lt~~G~v~~~G~n~~g 94 (372)
..++.-..||.|.+|-...... .... .....-...|..|+.... +.+.-..||.|..|-....
T Consensus 94 ~~l~~~s~dg~v~lWd~~~~~~-------------~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~- 159 (344)
T 4gqb_B 94 RGILVASDSGAVELWELDENET-------------LIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQ- 159 (344)
T ss_dssp TEEEEEETTSEEEEEEECTTSS-------------CEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT-
T ss_pred CeEEEEECCCEEEEEeccCCCc-------------eeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCC-
Confidence 3445556788888885432111 1111 111112245777766543 3344467888999864321
Q ss_pred CCcCCCCCCCCccCCCceeecCC--ceeEEEEeecC---cEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccccceEec-c
Q 042844 95 QLGRGALESRATWNDPKRVEGLD--QVNVCAAFASG---VVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVE-A 168 (372)
Q Consensus 95 qlg~~~~~~~~~~~~p~~i~~~~--~~~i~~i~~g~---~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~p~~i~-~ 168 (372)
..+..+. ...|..++... ...+.-+.||.|..|-.... +. ...+. .
T Consensus 160 ----------------~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~-~~-----------~~~~~~~ 211 (344)
T 4gqb_B 160 ----------------VVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCP-KP-----------ASQIGCS 211 (344)
T ss_dssp ----------------EEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSS-SC-----------EEECC--
T ss_pred ----------------cEEEEEcCcCCceEEEEecCCCCCceeeecccccccccccccc-ce-----------eeeeecc
Confidence 1111111 12355554432 23344567899999953211 00 00110 1
Q ss_pred cCCCcEEEEEecC---CeEEEEeCCCcEEEEeC
Q 042844 169 LAGEKIVKVSFGW---GHALAQTEDGKLFGWGY 198 (372)
Q Consensus 169 ~~~~~i~~I~~g~---~~~~~lt~~g~vy~wG~ 198 (372)
.....+..++... ...+.-..+|.|..|-.
T Consensus 212 ~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~ 244 (344)
T 4gqb_B 212 APGYLPTSLAWHPQQSEVFVFGDENGTVSLVDT 244 (344)
T ss_dssp --CCCEEEEEECSSCTTEEEEEETTSEEEEEES
T ss_pred eeeccceeeeecCCCCcceEEeccCCcEEEEEC
Confidence 1123355555432 22333467888888864
No 94
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=26.81 E-value=3.4e+02 Score=24.18 Aligned_cols=148 Identities=11% Similarity=0.126 Sum_probs=75.5
Q ss_pred EEEEeeCCCcEEEEeCCCCCccCCCCCCCCCCCCccce-eecCCCCCCeEEEecCC---CceEEEecCCcEEEEeCCCCC
Q 042844 19 IFMRSASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEP-TRVPGLPSDVTSVSAGH---YHSLAVTNNGAVWAWGRNNEV 94 (372)
Q Consensus 19 ~~~~l~~~g~vy~wG~n~~gqLG~~~~~~~~~~~~~~p-~~i~~~~~~i~~I~~G~---~h~~~lt~~G~v~~~G~n~~g 94 (372)
+++.-..+|.|++|-.+...... ....| ..+..-...|..|+... ...+....+|.|+.|-.....
T Consensus 196 ~l~s~~~dg~i~vwd~~~~~~~~----------~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~ 265 (430)
T 2xyi_A 196 YLLSASDDHTICLWDINATPKEH----------RVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNN 265 (430)
T ss_dssp EEEEECTTSCEEEEETTSCCBGG----------GEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSC
T ss_pred eEEEEeCCCeEEEEeCCCCCCCC----------ceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCC
Confidence 55556678888888765422110 01111 12222334687887743 334455689999999754321
Q ss_pred CCcCCCCCCCCccCCCceeecCCceeEEEEeecC---cEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccccceEecccCC
Q 042844 95 QLGRGALESRATWNDPKRVEGLDQVNVCAAFASG---VVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAG 171 (372)
Q Consensus 95 qlg~~~~~~~~~~~~p~~i~~~~~~~i~~i~~g~---~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~p~~i~~~~~ 171 (372)
. ..+..........|..++... ...+.-..+|.|..|-....++ |........
T Consensus 266 ~------------~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~------------~~~~~~~h~ 321 (430)
T 2xyi_A 266 T------------SKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKL------------KLHSFESHK 321 (430)
T ss_dssp S------------SSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTS------------CSEEEECCS
T ss_pred C------------CcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCC------------CeEEeecCC
Confidence 0 011111111122344444432 2344557789999997543211 111111112
Q ss_pred CcEEEEEecCC---eEEEEeCCCcEEEEeCCC
Q 042844 172 EKIVKVSFGWG---HALAQTEDGKLFGWGYSA 200 (372)
Q Consensus 172 ~~i~~I~~g~~---~~~~lt~~g~vy~wG~n~ 200 (372)
..|..|+...+ ..+.-..+|.|..|-...
T Consensus 322 ~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~ 353 (430)
T 2xyi_A 322 DEIFQVQWSPHNETILASSGTDRRLHVWDLSK 353 (430)
T ss_dssp SCEEEEEECSSCTTEEEEEETTSCCEEEEGGG
T ss_pred CCEEEEEECCCCCCEEEEEeCCCcEEEEeCCC
Confidence 45777776543 355556788899997643
No 95
>1zvt_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 1.70A {Escherichia coli}
Probab=26.56 E-value=2.9e+02 Score=23.24 Aligned_cols=75 Identities=8% Similarity=0.020 Sum_probs=44.9
Q ss_pred EEeecCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccccceEecccCCCcEEEEEec--CCeEEEEeCCCcEEEEeCCC
Q 042844 123 AAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFG--WGHALAQTEDGKLFGWGYSA 200 (372)
Q Consensus 123 ~i~~g~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~p~~i~~~~~~~i~~I~~g--~~~~~~lt~~g~vy~wG~n~ 200 (372)
..+.+..+.++.|+.|++|..-.... -.....- ......+....+++|+.+... ..+.+++|++|.+.-.-...
T Consensus 39 ~~~~t~~~ll~~T~~Gr~~~~~~~el---p~~r~~G-~~i~~~i~L~~~e~Iv~~~~~~~~~~lll~T~~G~~Kr~~~~e 114 (256)
T 1zvt_A 39 VKGKSNQPVVFVDSTGRSYAIDPITL---PSARGQG-EPLTGKLTLPPGATVDHMLMESDDQKLLMASDAGYGFVCTFND 114 (256)
T ss_dssp EEEETTSCEEEEETTSEEEEECGGGS---CCSSSCC-EEGGGTCCCCTTCCEEEEECCCTTCEEEEEBTTSEEEEEEGGG
T ss_pred EEeCCCCEEEEEeCCCeEEEEEHHHC---CCcCCCC-eEeeeeecCCCCCEEEEEEEeCCCCEEEEEeCCCeEEEeEHHH
Confidence 34556677899999999998865432 1111100 011112333346778888663 44578889999888776544
Q ss_pred C
Q 042844 201 D 201 (372)
Q Consensus 201 ~ 201 (372)
+
T Consensus 115 ~ 115 (256)
T 1zvt_A 115 L 115 (256)
T ss_dssp G
T ss_pred h
Confidence 3
No 96
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=26.31 E-value=22 Score=31.03 Aligned_cols=17 Identities=24% Similarity=0.317 Sum_probs=12.1
Q ss_pred EEEEEeCCCcEEEEeCC
Q 042844 130 VSSAIGDDGSLWVWGKS 146 (372)
Q Consensus 130 ~~~~lt~~g~v~~~G~n 146 (372)
+..+...+++||++|-.
T Consensus 49 ~~~~~~~~~~lyv~GG~ 65 (318)
T 2woz_A 49 HSSIVTQQNQVYVVGGL 65 (318)
T ss_dssp EEEEECSSSCEEEEESS
T ss_pred ceEEEEECCEEEEECCc
Confidence 34455677899999963
No 97
>3q7x_A De novo designed beta-trefoil architecture with S primary structure; beta-terfoil, de novo protein; 1.40A {Synthetic} PDB: 3q7w_A 3o4d_A 3q7y_A 3o4b_A 3o4c_A 3o4a_A* 3o49_A
Probab=26.19 E-value=2.1e+02 Score=21.45 Aligned_cols=107 Identities=16% Similarity=-0.008 Sum_probs=53.1
Q ss_pred eEEEecCCCceEEEecCCcEEEEeCCCCCCCcCCCCCCCCccCCCceeecCCceeEEEEeecCcEEEEEeCCCcEEEEeC
Q 042844 66 VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGK 145 (372)
Q Consensus 66 i~~I~~G~~h~~~lt~~G~v~~~G~n~~gqlg~~~~~~~~~~~~p~~i~~~~~~~i~~i~~g~~~~~~lt~~g~v~~~G~ 145 (372)
+.--.|...+.+-+..||.|-....... .........+. ..-+.|..+.. ...+++..+|+||.--.
T Consensus 8 ~~~~~~~~g~~L~I~~dG~V~Gt~~~~~----------~~s~l~~~~v~-~G~V~I~g~~s--g~yL~m~~~G~v~Gs~~ 74 (132)
T 3q7x_A 8 VLLRSTETGQFLRINPDGTVDGTRDRSD----------PGIQFQISPEG-NGEVLLRSTET--GQFLRINPDGTVDGTRD 74 (132)
T ss_dssp EEEEETTTCCEEEECTTSBEEEECCTTC----------GGGCEEEEEEE-TTEEEEEETTT--CCEEEECTTSBEEEECC
T ss_pred heeeeccCcEEEEECCCCcEEeecCCCC----------CCcEEEEEecc-cCEEEEEEEcc--cEEEEECCCCCEeeccC
Confidence 4444567777788889999987653210 00111111111 12233443333 34578899999996422
Q ss_pred CCCCCCCCCCCCcccccceEecccCCCcEEEEEecCCeEEEEeCCCcEEEE
Q 042844 146 SKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGW 196 (372)
Q Consensus 146 n~~gqlg~~~~~~~~~~p~~i~~~~~~~i~~I~~g~~~~~~lt~~g~vy~w 196 (372)
. ........- .........|+.+..|. .++++++|++|.-
T Consensus 75 --~------s~ec~flE~-~~~~~g~v~ikg~~sg~--YLamnk~G~lygs 114 (132)
T 3q7x_A 75 --R------SDPGIQFQI-SPEGNGEVLLRSTETGQ--FLRINPDGTVDGT 114 (132)
T ss_dssp ---------CCGGGCEEE-EEEETTEEEEEETTTCC--EEEECTTSBEEEE
T ss_pred --C------CCCceeEEE-EeecCcEEEEEeccCCe--EEEECCCCcCcCC
Confidence 1 010111111 11111112233444444 8899999999964
No 98
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=26.11 E-value=3.4e+02 Score=23.96 Aligned_cols=252 Identities=12% Similarity=-0.051 Sum_probs=0.0
Q ss_pred eeEEEEeeCCCcEEEEeCC--CCCccCCCCCCCCCCCCccceeecCC--CCCCeEEEecC----CCceEEEecCCcEEEE
Q 042844 17 SRIFMRSASGTAVVSFGDG--SQGALGLPTSLTGVGGDAYEPTRVPG--LPSDVTSVSAG----HYHSLAVTNNGAVWAW 88 (372)
Q Consensus 17 ~~~~~~l~~~g~vy~wG~n--~~gqLG~~~~~~~~~~~~~~p~~i~~--~~~~i~~I~~G----~~h~~~lt~~G~v~~~ 88 (372)
...++.-..||.|.+|-.. ..+++-... .......+.+.. ....+..+..- ....+.-+.||.|+.|
T Consensus 123 ~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~-----~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw 197 (437)
T 3gre_A 123 FDAFAVSSKDGQIIVLKVNHYQQESEVKFL-----NCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIF 197 (437)
T ss_dssp SSEEEEEETTSEEEEEEEEEEEETTEEEEE-----EEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEE
T ss_pred CCEEEEEeCCCEEEEEEeccccCCceeecc-----ccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEE
Q ss_pred eCCCCCCCcCCCC--CCCCccCCCceeecCCceeEEEEeecCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccccceEe
Q 042844 89 GRNNEVQLGRGAL--ESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRV 166 (372)
Q Consensus 89 G~n~~gqlg~~~~--~~~~~~~~p~~i~~~~~~~i~~i~~g~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~p~~i 166 (372)
-......+..-.. . ...+.-+.++......+.-+.||.|..| +......-..+
T Consensus 198 d~~~~~~~~~~~~~~h-------------~~~v~~~~~s~~~~~l~s~~~dg~i~iw------------d~~~~~~~~~~ 252 (437)
T 3gre_A 198 DIRTLERLQIIENSPR-------------HGAVSSICIDEECCVLILGTTRGIIDIW------------DIRFNVLIRSW 252 (437)
T ss_dssp ETTTCCEEEEEECCGG-------------GCCEEEEEECTTSCEEEEEETTSCEEEE------------ETTTTEEEEEE
T ss_pred eCCCCeeeEEEccCCC-------------CCceEEEEECCCCCEEEEEcCCCeEEEE------------EcCCccEEEEE
Q ss_pred cccCCCcEEEEEecCC------eEEEEeCCCcEEEEeCCCCCCCCCCCCCCcCCCCCCCcCCCCCCccccchhhHHHhhh
Q 042844 167 EALAGEKIVKVSFGWG------HALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQK 240 (372)
Q Consensus 167 ~~~~~~~i~~I~~g~~------~~~~lt~~g~vy~wG~n~~gqlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (372)
.......|..++.... ..+.-..+|.|..|-......+...
T Consensus 253 ~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~--------------------------------- 299 (437)
T 3gre_A 253 SFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAF--------------------------------- 299 (437)
T ss_dssp BCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEE---------------------------------
T ss_pred ecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEE---------------------------------
Q ss_pred hhhcccccccCCCceeceee------------ec-CccEEEEEecCCeeEEEecCCCEEEEeCCCCCccC----------
Q 042844 241 LVSEGMEKEKYMPIIWEPFL------------VE-GVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLG---------- 297 (372)
Q Consensus 241 ~~~~~~~~~~~~~~~~~p~~------------i~-~~~i~~I~~G~~h~~alt~~G~vy~wG~n~~gqlG---------- 297 (372)
...........+.|.. .. ...-+.+. .....+.-..||.|+.|--.....+.
T Consensus 300 ----~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~ 374 (437)
T 3gre_A 300 ----INSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELSSSKAVISPSRFSD 374 (437)
T ss_dssp ----ESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGCEEEECC--CCC
T ss_pred ----EcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCcccceEEecccccCc
Q ss_pred -------------------CCCCCCcccceeeccccEEEecCCC----ceEEEEeeccccccCCCccEEEe
Q 042844 298 -------------------REKQDMGMFPVDINFHPVSISSGLG----HSLAICEVRSSNVTGGARGIVSW 345 (372)
Q Consensus 298 -------------------~~~~~~~~~P~~v~~~i~~ia~G~~----~s~~l~~~~~~~~~~~~g~v~~w 345 (372)
............-...|..|+.-.. ..+.-.+ ||.|..|
T Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~---------dG~I~iw 436 (437)
T 3gre_A 375 VFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVACDN---------SGLIGIF 436 (437)
T ss_dssp EEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESSSSEEEEEEET---------TSCEEEE
T ss_pred eEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccCCceEEEEEcC---------CceEEEe
No 99
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=24.93 E-value=1.3e+02 Score=26.15 Aligned_cols=17 Identities=29% Similarity=0.317 Sum_probs=13.0
Q ss_pred CCeEEEEeCCCcEEEEeC
Q 042844 181 WGHALAQTEDGKLFGWGY 198 (372)
Q Consensus 181 ~~~~~~lt~~g~vy~wG~ 198 (372)
..|++++ .+++||++|-
T Consensus 110 ~~~~~~~-~~~~iyv~GG 126 (357)
T 2uvk_A 110 AGHVTFV-HNGKAYVTGG 126 (357)
T ss_dssp SSEEEEE-ETTEEEEEEC
T ss_pred ccceEEE-ECCEEEEEeC
Confidence 4576666 6789999994
No 100
>1q1u_A FGF-12, fibrobast growth factor homologous factor 1, FGF12B; human, hormone/growth factor complex; 1.70A {Homo sapiens} SCOP: b.42.1.1
Probab=24.27 E-value=1.8e+02 Score=22.20 Aligned_cols=70 Identities=21% Similarity=0.180 Sum_probs=42.9
Q ss_pred CCCCCCeEEEecCCCceEEEecCCcEEEEeCCCCCCCcCCCCCCCCccCCCceee-cCCceeEEEEeecCcEEEEEeCCC
Q 042844 60 PGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVE-GLDQVNVCAAFASGVVSSAIGDDG 138 (372)
Q Consensus 60 ~~~~~~i~~I~~G~~h~~~lt~~G~v~~~G~n~~gqlg~~~~~~~~~~~~p~~i~-~~~~~~i~~i~~g~~~~~~lt~~g 138 (372)
+.+...+.++-|-..+.+.+..||.|-....... ........+ ...-+.|..+..+. .++++++|
T Consensus 6 ~~l~g~~~~Ly~r~g~~LqI~~dG~V~Gt~~~~~------------~~sile~~sv~~g~V~I~gv~s~~--YLcMn~~G 71 (144)
T 1q1u_A 6 PQLKGIVTRLFSQQGYFLQMHPDGTIDGTKDENS------------DYTLFNLIPVGLRVVAIQGVKASL--YVAMNGEG 71 (144)
T ss_dssp CCCCCEEEEEEETTTEEEEECTTSCEEEESCTTS------------GGGCEEEEEEETTEEEEEETTTCC--EEEECTTS
T ss_pred chhcCceEEEEEcCCeEEEECCCCcEeeecCCCC------------CceeEEEEeccCCEEEEEEcccCc--EEEEcCCC
Confidence 3455667899998878888999999987653211 001111111 12234555554444 48999999
Q ss_pred cEEEE
Q 042844 139 SLWVW 143 (372)
Q Consensus 139 ~v~~~ 143 (372)
+||.-
T Consensus 72 ~Lygs 76 (144)
T 1q1u_A 72 YLYSS 76 (144)
T ss_dssp CEEEE
T ss_pred CEEec
Confidence 99973
No 101
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=23.29 E-value=3.5e+02 Score=23.06 Aligned_cols=22 Identities=9% Similarity=-0.088 Sum_probs=15.8
Q ss_pred eeeeEEEEeeCCCcEEEEeCCC
Q 042844 15 LTSRIFMRSASGTAVVSFGDGS 36 (372)
Q Consensus 15 ~~~~~~~~l~~~g~vy~wG~n~ 36 (372)
.....++.-..||.|+.|-...
T Consensus 46 ~d~~~l~sg~~Dg~v~iwd~~~ 67 (343)
T 3lrv_A 46 YDKWVCMCRCEDGALHFTQLKD 67 (343)
T ss_dssp EEEEEEEEEEETTEEEEEEESS
T ss_pred CCCCEEEEECCCCcEEEEECCC
Confidence 3455666667899999997643
No 102
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=23.25 E-value=3.3e+02 Score=22.75 Aligned_cols=28 Identities=14% Similarity=0.239 Sum_probs=17.3
Q ss_pred CcEEEEEecCC--eEEEEeCCCcEEEEeCC
Q 042844 172 EKIVKVSFGWG--HALAQTEDGKLFGWGYS 199 (372)
Q Consensus 172 ~~i~~I~~g~~--~~~~lt~~g~vy~wG~n 199 (372)
..|..|+...+ ..+.-..||.|..|-..
T Consensus 216 ~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~ 245 (340)
T 4aow_A 216 GYLNTVTVSPDGSLCASGGKDGQAMLWDLN 245 (340)
T ss_dssp SCEEEEEECTTSSEEEEEETTCEEEEEETT
T ss_pred CcEEEEEECCCCCEEEEEeCCCeEEEEEec
Confidence 35666665433 44445678888888654
No 103
>1zvu_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 3.00A {Escherichia coli}
Probab=23.12 E-value=5.6e+02 Score=25.38 Aligned_cols=120 Identities=10% Similarity=-0.017 Sum_probs=65.9
Q ss_pred CCceEEEecCCcEEEEeCCCCCCCcCCCCCCCCccCCCceeecCCceeEEEEeec--CcEEEEEeCCCcEEEEeCCCCCC
Q 042844 73 HYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFAS--GVVSSAIGDDGSLWVWGKSKRGQ 150 (372)
Q Consensus 73 ~~h~~~lt~~G~v~~~G~n~~gqlg~~~~~~~~~~~~p~~i~~~~~~~i~~i~~g--~~~~~~lt~~g~v~~~G~n~~gq 150 (372)
..+.+++|+.|++|.--...-... ..... .....++.-.+.+|+.+.+. ..+.++.|++|.+.-.-...+-.
T Consensus 514 ~d~ll~ft~~Gr~y~~~~~~lP~~---~~~G~---~i~~ll~l~~~e~i~~~~~~~~~~~l~~~T~~G~vk~~~l~~~~~ 587 (716)
T 1zvu_A 514 NQPVVFVDSTGRSYAIDPITLPSA---RGQGE---PLTGKLTLPPGATVDHMLMESDDQKLLMASDAGYGFVCTFNDLVA 587 (716)
T ss_dssp SSCEEEEETTSEEEEECTTTSCCC---C---C---BSTTTSCCCTTCCEEEEECCCTTCEEEEEBTTSEEEEEEGGGGCC
T ss_pred CCEEEEEecCCcEEEEEeeecccc---cccCe---eHHhccCCCCCCeEEEEEEecCCceEEEEeCCceEEEecHHHhcc
Confidence 345578899999999875543221 11100 11122333345567766554 34567789999988765433210
Q ss_pred CCCCCCCcccccceE-ecccCCCcEEEE---EecCCeEEEEeCCCcEEEEeCCCCCCCCC
Q 042844 151 LGLGKDITEAIVPSR-VEALAGEKIVKV---SFGWGHALAQTEDGKLFGWGYSADGRIGN 206 (372)
Q Consensus 151 lg~~~~~~~~~~p~~-i~~~~~~~i~~I---~~g~~~~~~lt~~g~vy~wG~n~~gqlg~ 206 (372)
. ...-.. +..-.++.++.+ ..+..+.+++|++|++..|-...--.+|+
T Consensus 588 ~--------~~~g~~ai~L~~~d~lv~~~~~~~~~~~v~l~t~~g~~lrf~~~~v~~~gr 639 (716)
T 1zvu_A 588 R--------NRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLSK 639 (716)
T ss_dssp C--------STTCEECBCCCTTCCBCCCEECCCTTCEEEEEETTSEEEEEESTTSCBCSS
T ss_pred c--------CccceEEEeeCCCCEEEEEEEecCCCCEEEEEeCCCeEEEEEHHHCCccCc
Confidence 0 000011 111122333332 24678899999999999998876555554
No 104
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=22.60 E-value=3.6e+02 Score=22.92 Aligned_cols=164 Identities=9% Similarity=-0.073 Sum_probs=88.7
Q ss_pred eeeeEEEEeeCCCcEEEEeCCCCCccCCCCCCCCCCCCccceeecCCCCCCeEEEec---CCCceEEEecCCcEEEEeCC
Q 042844 15 LTSRIFMRSASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSA---GHYHSLAVTNNGAVWAWGRN 91 (372)
Q Consensus 15 ~~~~~~~~l~~~g~vy~wG~n~~gqLG~~~~~~~~~~~~~~p~~i~~~~~~i~~I~~---G~~h~~~lt~~G~v~~~G~n 91 (372)
-....+++.|+.|++|.-=.. +|.... ... + ++ -.++|..+.+ .....+++|++|.+.-.-..
T Consensus 33 ~t~~~ll~fT~~G~v~~~~~~---~lp~~~-----~~~----l-l~-~~e~i~~v~~~~~~~~~~v~~T~~G~iKr~~l~ 98 (276)
T 3no0_A 33 PFTEGLFLVSNRGRVYWIAGS---QALQGS-----KVS----L-KS-REEKIVGAFIREKFGNRLLLATKKGYVKKIPLA 98 (276)
T ss_dssp ETTSCEEEEETTSEEEEECSH---HHHTSE-----ECC----C-SS-TTCCEEEEEEGGGSCSEEEEEETTSEEEEEEGG
T ss_pred CCCCEEEEEcCCCeEEEEEhh---hCccCc-----ccc----c-CC-CCCEEEEEECCcCCCCEEEEEeCCCEEEEEEHH
Confidence 344568889999999976432 221111 000 2 22 2356887766 22567889999999888755
Q ss_pred CCCCCcCCCCCCCCccCCCceeecCCceeEEEEeecCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccccceEecccCC
Q 042844 92 NEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAG 171 (372)
Q Consensus 92 ~~gqlg~~~~~~~~~~~~p~~i~~~~~~~i~~i~~g~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~p~~i~~~~~ 171 (372)
.+.+-..+. .-..+..-+...-...+.+....+++|++|++|.+-....-..|....- .+ .+....+
T Consensus 99 ~~~~~~~G~--------~~i~lkegD~l~~~~~~~~~~~ill~T~~G~~~r~~~~eip~~gR~a~G----v~-~i~L~~~ 165 (276)
T 3no0_A 99 EFEYKAQGM--------PIIKLTEGDEVVSIASSVDETHILLFTKKGRVARFSVREVPPSTPGARG----VQ-GIKLEKN 165 (276)
T ss_dssp GTTTCSTTE--------ECSCCCTTCCEEEEEECCSSCEEEEEETTSEEEEEEGGGSCBCCTTCCC----EE-CCCCCTT
T ss_pred HhhhhcCCe--------EEEecCCCCEEEEEEEeCCCCEEEEEECCCEEEEEEhhhCCCcCCCCCC----EE-EEccCCC
Confidence 442110000 0001111111222223335567899999999999876543333322110 11 1222234
Q ss_pred CcEEEEEec--CCeEEEEeCCCcEEEEeCCCCCCCC
Q 042844 172 EKIVKVSFG--WGHALAQTEDGKLFGWGYSADGRIG 205 (372)
Q Consensus 172 ~~i~~I~~g--~~~~~~lt~~g~vy~wG~n~~gqlg 205 (372)
++|+.+... ....+++|++|.+.-.-...+-..+
T Consensus 166 d~vv~~~~~~~~~~ll~~T~~G~~kr~~~~e~~~~~ 201 (276)
T 3no0_A 166 DETSGLRIWNGEPYLLVITAKGRVKKISHEEIPKTN 201 (276)
T ss_dssp CCEEEEEEESSCSEEEEEETTSCEEEEEGGGSCCCC
T ss_pred CEEEEEEEeCCCCEEEEEeCCCcEEEeEHHHcccCC
Confidence 667766543 3468888999988887765554333
No 105
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=21.28 E-value=4e+02 Score=23.03 Aligned_cols=173 Identities=11% Similarity=0.031 Sum_probs=91.9
Q ss_pred eeeeeeEEEEeeCCCcEEEEeCCCCCccCCCCCCCCCCCCccceeecCC-CCCCeEEEecC-----CCceEEEecCCcEE
Q 042844 13 NVLTSRIFMRSASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPG-LPSDVTSVSAG-----HYHSLAVTNNGAVW 86 (372)
Q Consensus 13 ~~~~~~~~~~l~~~g~vy~wG~n~~gqLG~~~~~~~~~~~~~~p~~i~~-~~~~i~~I~~G-----~~h~~~lt~~G~v~ 86 (372)
.+.+...+++.++.|++|.+=...--..+... .-......++. -.++|+.+... ..+.+++|++|.++
T Consensus 54 ~~~~~~~ll~~T~~G~~~~~~~~~ip~~~r~~------~G~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~k 127 (312)
T 1suu_A 54 CVNTHDYLFMISNEGKLYLINAYEIKDSSRAS------KGQNISELINLGDQEEILTIKNSKDLTDDAYLLLTTASGKIA 127 (312)
T ss_dssp EEETTCEEEEEETTSEEEEEEGGGSCC-------------CBGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEE
T ss_pred EECCCCEEEEEECCCeEEEEEHHHCCCCCccC------CCcChhhccCCCCCCEEEEEEEeccCCCCCEEEEEeCCCeEE
Confidence 34456788999999999999765321111111 00011111221 11357666554 35578899999999
Q ss_pred EEeCCCCCCCc-CCCCCCCCccCCCceeecCCceeEEE--EeecCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccccc
Q 042844 87 AWGRNNEVQLG-RGALESRATWNDPKRVEGLDQVNVCA--AFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVP 163 (372)
Q Consensus 87 ~~G~n~~gqlg-~~~~~~~~~~~~p~~i~~~~~~~i~~--i~~g~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~p 163 (372)
..-...+-... .+... ..+.. +-.++. +..+....+++|++|.+..+-....-..|.... -
T Consensus 128 r~~l~~~~~~r~~G~~~--------i~L~~--~d~lv~~~~~~~~~~i~l~T~~G~~~r~~~~ev~~~gR~~~------G 191 (312)
T 1suu_A 128 RFESTDFKAVKSRGVIV--------IKLND--KDFVTSAEIVFKDEKVICLSKKGSAFIFNSRDVRLTNRGTQ------G 191 (312)
T ss_dssp EEEGGGGCC----CEEC--------BCCCT--TCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTBC------C
T ss_pred EEEHHHhhccCCCcEEE--------EecCC--CCEEEEEEEeCCCCEEEEEeCCCcEEEEEHHHccccCCCCC------C
Confidence 98755432110 10000 01111 222333 234566789999999999887654322222110 1
Q ss_pred eEe-cccCCCcEEEEEe--cCCeEEEEeCCCcEEEEeCCCCCCCCCC
Q 042844 164 SRV-EALAGEKIVKVSF--GWGHALAQTEDGKLFGWGYSADGRIGNL 207 (372)
Q Consensus 164 ~~i-~~~~~~~i~~I~~--g~~~~~~lt~~g~vy~wG~n~~gqlg~~ 207 (372)
... ....++.++.+.. ...+.++++++|.+-..-...+-..+++
T Consensus 192 v~~i~L~~~d~vv~~~~v~~~~~l~~vt~~G~~kr~~~~e~~~~~R~ 238 (312)
T 1suu_A 192 VCGMKLKEGDLFVKVLSVKENPYLLIVSENGYGKRLNMSKISELKRG 238 (312)
T ss_dssp EECCCCCTTCCEEEEEECTTCSEEEEEETTSEEEEEEGGGSCBCCTT
T ss_pred eEeEEeCCCCEEEEEEEECCCCeEEEEECCCceEEEEHHHhcccCCC
Confidence 111 1112455665543 3456888999998888777666555554
No 106
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=21.26 E-value=3.6e+02 Score=22.51 Aligned_cols=24 Identities=13% Similarity=0.105 Sum_probs=15.8
Q ss_pred CeeEEEecCCCEEEEeCCCCCccCC
Q 042844 274 DHSLVLGRNGVLLSCGSNVYGQLGR 298 (372)
Q Consensus 274 ~h~~alt~~G~vy~wG~n~~gqlG~ 298 (372)
...+.++.+|++ +|-.+.....|.
T Consensus 244 ~~~~~~~~~g~~-~W~~~~~~~~~~ 267 (276)
T 3no2_A 244 PQLVEIDSEGKV-VWQLNDKVKFGM 267 (276)
T ss_dssp CSEEEECTTSBE-EEEECCTTTSCC
T ss_pred ceEEEECCCCCE-EEEecCcccccc
Confidence 357888889886 666555555543
No 107
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=21.22 E-value=3.8e+02 Score=22.71 Aligned_cols=115 Identities=9% Similarity=-0.052 Sum_probs=56.7
Q ss_pred CCCeEEEecCC--CceEEEecCCcEEEEeCCCCCCCcCCCCCCCCccCCCceeecCCceeEEEEee--cCcEEEEEeCCC
Q 042844 63 PSDVTSVSAGH--YHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFA--SGVVSSAIGDDG 138 (372)
Q Consensus 63 ~~~i~~I~~G~--~h~~~lt~~G~v~~~G~n~~gqlg~~~~~~~~~~~~p~~i~~~~~~~i~~i~~--g~~~~~~lt~~g 138 (372)
...|..++... ...+.-..||.|..|-..... ..+..........|..+.. .....++-+.+|
T Consensus 52 ~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~-------------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~ 118 (372)
T 1k8k_C 52 NGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRT-------------WKPTLVILRINRAARCVRWAPNEKKFAVGSGSR 118 (372)
T ss_dssp SSCEEEEEEETTTTEEEEEETTSCEEEEEEETTE-------------EEEEEECCCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred CCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCe-------------eeeeEEeecCCCceeEEEECCCCCEEEEEeCCC
Confidence 34677776553 334445678888888642210 0000000001113333333 344556667788
Q ss_pred cEEEEeCCCCCCCCCCCCCcccccceEecccCCCcEEEEEecC--CeEEEEeCCCcEEEEeCC
Q 042844 139 SLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGW--GHALAQTEDGKLFGWGYS 199 (372)
Q Consensus 139 ~v~~~G~n~~gqlg~~~~~~~~~~p~~i~~~~~~~i~~I~~g~--~~~~~lt~~g~vy~wG~n 199 (372)
.|+.|-..... .......+.......|..++... ...++-+.+|.|+.|-..
T Consensus 119 ~v~i~d~~~~~---------~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~ 172 (372)
T 1k8k_C 119 VISICYFEQEN---------DWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAY 172 (372)
T ss_dssp SEEEEEEETTT---------TEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECC
T ss_pred EEEEEEecCCC---------cceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcc
Confidence 88887542210 00011112111134577777643 355556788999999854
No 108
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=20.79 E-value=3.1e+02 Score=25.41 Aligned_cols=64 Identities=11% Similarity=0.177 Sum_probs=41.9
Q ss_pred cceeeeeeEEEEeeCCCcEEEEeCCCCCccCCCCCCCCCCCCccceeec---------CCCCCCeEEEecCC--CceEEE
Q 042844 11 HVNVLTSRIFMRSASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRV---------PGLPSDVTSVSAGH--YHSLAV 79 (372)
Q Consensus 11 ~~~~~~~~~~~~l~~~g~vy~wG~n~~gqLG~~~~~~~~~~~~~~p~~i---------~~~~~~i~~I~~G~--~h~~~l 79 (372)
|-++....+.++|++|+.|..|--... ..+|+-+ ......|.+++.|. -.-+++
T Consensus 133 HPl~~~ds~LVVLtsD~~Ir~yDl~~s---------------~~~P~~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYvl 197 (452)
T 3pbp_A 133 HPKSYRDSCIVVLKEDDTITMFDILNS---------------QEKPIVLNKPNNSFGLDARVNDITDLEFSKDGLTLYCL 197 (452)
T ss_dssp CTTBGGGCEEEEEETTSCEEEEETTCT---------------TSCCEEESCCCSEEESCSSCCCEEEEEECTTSSCEEEE
T ss_pred ccccCCCCeEEEEecCCEEEEEEcccC---------------CCCCcchhccccccCCCcccceEEEEEEcCCCcEEEEE
Confidence 666677789999999999999987651 1122211 11114577777766 233566
Q ss_pred e--cCCcEEEEe
Q 042844 80 T--NNGAVWAWG 89 (372)
Q Consensus 80 t--~~G~v~~~G 89 (372)
+ +.|+||+.=
T Consensus 198 ~~t~~GDIYAlc 209 (452)
T 3pbp_A 198 NTTEGGDIFAFY 209 (452)
T ss_dssp ECTTSCEEEEES
T ss_pred ecCCCCCEEEEC
Confidence 6 889999864
Done!