Query 042846
Match_columns 243
No_of_seqs 236 out of 1288
Neff 6.0
Searched_HMMs 29240
Date Mon Mar 25 17:46:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042846.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042846hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1gv2_A C-MYB, MYB proto-oncoge 100.0 6.4E-36 2.2E-40 232.2 11.7 104 11-115 1-104 (105)
2 3zqc_A MYB3; transcription-DNA 100.0 1.7E-35 5.7E-40 238.9 13.3 111 14-125 2-112 (131)
3 2k9n_A MYB24; R2R3 domain, DNA 100.0 1E-35 3.6E-40 232.4 9.1 105 14-119 1-105 (107)
4 1h8a_C AMV V-MYB, MYB transfor 100.0 3.9E-35 1.4E-39 235.5 10.8 110 5-115 18-127 (128)
5 3osg_A MYB21; transcription-DN 100.0 8.7E-35 3E-39 233.4 10.8 106 8-115 5-110 (126)
6 1h89_C C-MYB, MYB proto-oncoge 100.0 7.7E-33 2.6E-37 229.6 11.2 108 7-115 51-158 (159)
7 1h89_C C-MYB, MYB proto-oncoge 100.0 6.2E-33 2.1E-37 230.1 6.7 114 12-126 4-118 (159)
8 1h8a_C AMV V-MYB, MYB transfor 99.9 7.9E-24 2.7E-28 169.6 5.6 86 40-126 1-87 (128)
9 2dim_A Cell division cycle 5-l 99.9 3.3E-23 1.1E-27 150.1 3.3 66 9-75 4-69 (70)
10 1ign_A Protein (RAP1); RAP1,ye 99.8 1.7E-19 5.7E-24 158.1 7.4 105 10-115 4-200 (246)
11 2llk_A Cyclin-D-binding MYB-li 99.8 3E-19 1E-23 130.9 5.2 60 53-113 9-68 (73)
12 2dim_A Cell division cycle 5-l 99.7 3.7E-18 1.3E-22 123.4 7.7 64 62-125 4-68 (70)
13 2d9a_A B-MYB, MYB-related prot 99.7 1.3E-18 4.4E-23 122.1 5.1 57 9-66 3-59 (60)
14 1gvd_A MYB proto-oncogene prot 99.7 1.5E-18 5E-23 118.6 4.8 52 12-64 1-52 (52)
15 2juh_A Telomere binding protei 99.7 9.1E-19 3.1E-23 139.7 3.6 83 8-91 11-103 (121)
16 2din_A Cell division cycle 5-l 99.7 2.9E-18 9.8E-23 122.7 5.2 61 59-120 1-61 (66)
17 2cu7_A KIAA1915 protein; nucle 99.7 1.2E-17 4.3E-22 121.4 7.3 58 61-118 3-60 (72)
18 1guu_A C-MYB, MYB proto-oncoge 99.7 2.9E-18 1E-22 117.0 3.7 52 12-64 1-52 (52)
19 2roh_A RTBP1, telomere binding 99.7 9E-18 3.1E-22 134.1 6.3 78 10-88 27-114 (122)
20 2d9a_A B-MYB, MYB-related prot 99.7 2.1E-17 7.2E-22 115.9 6.6 56 62-117 3-59 (60)
21 1ity_A TRF1; helix-turn-helix, 99.7 1.1E-17 3.6E-22 120.7 4.2 63 9-71 5-68 (69)
22 1guu_A C-MYB, MYB proto-oncoge 99.7 7E-17 2.4E-21 110.1 6.1 50 65-114 1-51 (52)
23 1ity_A TRF1; helix-turn-helix, 99.7 1.5E-16 5.1E-21 114.7 7.5 61 60-120 3-66 (69)
24 1gvd_A MYB proto-oncogene prot 99.7 1.4E-16 4.9E-21 108.6 6.5 50 65-114 1-51 (52)
25 1x41_A Transcriptional adaptor 99.7 5.1E-17 1.7E-21 114.3 4.3 55 10-65 4-58 (60)
26 3sjm_A Telomeric repeat-bindin 99.7 3.8E-17 1.3E-21 116.7 3.3 56 11-66 8-64 (64)
27 2din_A Cell division cycle 5-l 99.6 2.2E-17 7.6E-22 118.0 0.9 59 7-68 2-60 (66)
28 1w0t_A Telomeric repeat bindin 99.6 3.2E-16 1.1E-20 107.4 6.0 50 66-115 1-53 (53)
29 1x41_A Transcriptional adaptor 99.6 5.1E-16 1.8E-20 109.1 6.1 54 62-115 3-57 (60)
30 1w0t_A Telomeric repeat bindin 99.6 3.3E-16 1.1E-20 107.4 3.5 50 13-62 1-51 (53)
31 2yum_A ZZZ3 protein, zinc fing 99.6 1.7E-16 5.8E-21 116.0 2.1 60 9-69 3-67 (75)
32 2elk_A SPCC24B10.08C protein; 99.6 4E-16 1.4E-20 109.1 3.9 52 10-61 5-56 (58)
33 3sjm_A Telomeric repeat-bindin 99.6 1.1E-15 3.8E-20 109.1 6.1 53 65-117 9-64 (64)
34 2yum_A ZZZ3 protein, zinc fing 99.6 1.1E-15 3.6E-20 111.7 6.1 59 62-120 3-67 (75)
35 2cu7_A KIAA1915 protein; nucle 99.6 6.9E-16 2.4E-20 112.1 2.0 58 8-67 3-60 (72)
36 2elk_A SPCC24B10.08C protein; 99.5 5.4E-15 1.8E-19 103.3 6.0 51 62-112 4-56 (58)
37 1gv2_A C-MYB, MYB proto-oncoge 99.5 4.7E-15 1.6E-19 114.4 5.9 63 64-126 1-64 (105)
38 2ltp_A Nuclear receptor corepr 99.3 4.4E-16 1.5E-20 117.9 0.0 57 60-116 9-65 (89)
39 3osg_A MYB21; transcription-DN 99.5 5.6E-15 1.9E-19 117.9 5.9 65 62-126 6-70 (126)
40 3zqc_A MYB3; transcription-DNA 99.5 1.1E-14 3.7E-19 116.9 3.9 84 7-96 47-130 (131)
41 2llk_A Cyclin-D-binding MYB-li 99.5 1.6E-14 5.5E-19 105.7 4.3 60 3-66 12-71 (73)
42 2k9n_A MYB24; R2R3 domain, DNA 99.5 2.6E-14 9E-19 110.9 5.0 60 67-126 1-61 (107)
43 2cqr_A RSGI RUH-043, DNAJ homo 99.5 6.5E-14 2.2E-18 102.4 6.0 52 63-114 14-69 (73)
44 2ckx_A NGTRF1, telomere bindin 99.5 5.2E-14 1.8E-18 105.3 5.5 69 15-84 1-79 (83)
45 2aje_A Telomere repeat-binding 99.5 6.5E-14 2.2E-18 109.1 5.9 78 9-86 8-94 (105)
46 2yus_A SWI/SNF-related matrix- 99.5 5.5E-14 1.9E-18 104.2 5.2 54 6-61 10-63 (79)
47 1x58_A Hypothetical protein 49 99.4 5.3E-13 1.8E-17 94.3 6.6 51 65-115 6-59 (62)
48 2ltp_A Nuclear receptor corepr 99.1 3E-14 1E-18 107.8 0.0 55 7-63 9-63 (89)
49 2yus_A SWI/SNF-related matrix- 99.4 2.2E-13 7.7E-18 100.9 4.3 48 64-111 15-62 (79)
50 2cqr_A RSGI RUH-043, DNAJ homo 99.4 1.8E-13 6.2E-18 100.1 3.1 55 7-62 11-68 (73)
51 1ign_A Protein (RAP1); RAP1,ye 99.4 5.2E-13 1.8E-17 117.0 5.9 60 63-123 4-69 (246)
52 2juh_A Telomere binding protei 99.4 8E-13 2.7E-17 105.3 6.3 54 61-114 11-69 (121)
53 2ckx_A NGTRF1, telomere bindin 99.3 7.5E-13 2.6E-17 99.0 5.5 48 68-115 1-53 (83)
54 2aje_A Telomere repeat-binding 99.3 2.6E-12 9E-17 100.0 7.8 55 62-116 8-67 (105)
55 2roh_A RTBP1, telomere binding 99.3 3.1E-12 1.1E-16 102.0 6.0 53 62-114 26-83 (122)
56 2cjj_A Radialis; plant develop 99.2 6.4E-12 2.2E-16 95.8 5.3 50 66-115 7-60 (93)
57 2cjj_A Radialis; plant develop 99.1 2.7E-11 9.4E-16 92.3 2.4 49 12-61 6-57 (93)
58 2eqr_A N-COR1, N-COR, nuclear 99.0 4.5E-10 1.6E-14 78.9 6.7 48 66-113 11-58 (61)
59 3hm5_A DNA methyltransferase 1 99.0 3E-10 1E-14 86.5 5.5 65 51-119 18-87 (93)
60 1x58_A Hypothetical protein 49 98.9 8.6E-10 3E-14 77.9 3.6 49 12-62 6-57 (62)
61 2cqq_A RSGI RUH-037, DNAJ homo 98.9 1.8E-09 6E-14 78.6 5.2 51 64-115 5-59 (72)
62 2eqr_A N-COR1, N-COR, nuclear 98.9 1.5E-09 5.1E-14 76.2 4.1 52 8-61 6-57 (61)
63 2iw5_B Protein corest, REST co 98.8 8.5E-09 2.9E-13 89.7 6.3 49 66-114 132-180 (235)
64 2cqq_A RSGI RUH-037, DNAJ homo 98.7 6.2E-09 2.1E-13 75.7 2.6 50 11-62 5-57 (72)
65 1wgx_A KIAA1903 protein; MYB D 98.7 5.2E-08 1.8E-12 71.0 7.3 52 66-117 7-62 (73)
66 1fex_A TRF2-interacting telome 98.6 2E-08 6.7E-13 70.3 2.4 48 14-62 2-58 (59)
67 2xag_B REST corepressor 1; ami 98.5 4.4E-08 1.5E-12 93.6 5.0 43 68-110 381-423 (482)
68 1wgx_A KIAA1903 protein; MYB D 98.5 4.5E-08 1.5E-12 71.3 3.0 49 14-63 8-59 (73)
69 2iw5_B Protein corest, REST co 98.4 1.1E-07 3.9E-12 82.6 4.2 51 10-62 129-179 (235)
70 1fex_A TRF2-interacting telome 98.4 2.8E-07 9.7E-12 64.4 5.1 47 67-113 2-58 (59)
71 1ug2_A 2610100B20RIK gene prod 98.3 4.2E-07 1.4E-11 68.5 4.6 50 68-117 34-86 (95)
72 2lr8_A CAsp8-associated protei 97.6 1.3E-07 4.3E-12 67.7 0.0 46 69-115 16-64 (70)
73 2yqk_A Arginine-glutamic acid 98.2 3.8E-06 1.3E-10 59.2 7.5 49 62-110 4-53 (63)
74 1ofc_X ISWI protein; nuclear p 98.2 6.4E-06 2.2E-10 74.7 9.1 99 15-114 111-275 (304)
75 4eef_G F-HB80.4, designed hema 98.1 1.2E-06 4.2E-11 63.6 2.0 44 14-58 20-66 (74)
76 4eef_G F-HB80.4, designed hema 98.0 1E-06 3.6E-11 64.0 1.4 43 67-109 20-66 (74)
77 4iej_A DNA methyltransferase 1 98.0 7.5E-06 2.6E-10 62.1 4.7 60 55-118 22-86 (93)
78 2yqk_A Arginine-glutamic acid 97.9 9.1E-06 3.1E-10 57.2 4.2 49 9-59 4-53 (63)
79 2xag_B REST corepressor 1; ami 97.7 1.6E-05 5.4E-10 76.1 4.1 51 10-62 376-426 (482)
80 4a69_C Nuclear receptor corepr 97.7 6.1E-05 2.1E-09 57.1 5.9 44 67-110 43-86 (94)
81 2crg_A Metastasis associated p 97.7 9.3E-05 3.2E-09 53.1 6.6 44 66-109 7-51 (70)
82 3hm5_A DNA methyltransferase 1 97.4 8E-05 2.7E-09 56.5 3.2 50 12-62 28-81 (93)
83 2crg_A Metastasis associated p 97.4 0.00013 4.3E-09 52.4 3.5 45 13-59 7-52 (70)
84 4a69_C Nuclear receptor corepr 97.3 0.00013 4.4E-09 55.3 3.5 44 14-59 43-86 (94)
85 2ebi_A DNA binding protein GT- 97.3 0.00027 9.1E-09 52.1 4.7 52 67-118 4-69 (86)
86 2ebi_A DNA binding protein GT- 97.2 5E-05 1.7E-09 56.1 0.3 49 13-61 3-63 (86)
87 2y9y_A Imitation switch protei 97.0 0.0025 8.6E-08 59.1 8.9 102 15-117 124-294 (374)
88 1ug2_A 2610100B20RIK gene prod 96.9 0.00068 2.3E-08 51.0 3.4 47 13-60 32-80 (95)
89 2lr8_A CAsp8-associated protei 95.7 0.0003 1E-08 50.3 0.0 52 9-62 9-62 (70)
90 4b4c_A Chromodomain-helicase-D 96.5 0.0033 1.1E-07 53.1 5.7 100 13-113 6-195 (211)
91 4b4c_A Chromodomain-helicase-D 94.8 0.024 8.2E-07 47.7 4.3 39 4-42 124-162 (211)
92 4iej_A DNA methyltransferase 1 94.5 0.026 8.9E-07 42.6 3.3 50 12-62 28-81 (93)
93 1irz_A ARR10-B; helix-turn-hel 93.9 0.14 4.8E-06 36.0 5.8 47 65-111 5-56 (64)
94 1ofc_X ISWI protein; nuclear p 92.6 0.18 6E-06 45.6 6.0 48 67-114 110-158 (304)
95 1irz_A ARR10-B; helix-turn-hel 91.3 0.19 6.6E-06 35.3 3.7 50 11-60 4-56 (64)
96 2xb0_X Chromo domain-containin 91.3 0.17 5.8E-06 45.0 4.2 28 15-42 169-196 (270)
97 2xb0_X Chromo domain-containin 80.7 2.7 9.4E-05 37.1 6.0 47 67-113 3-54 (270)
98 2y9y_A Imitation switch protei 75.6 2.1 7E-05 39.7 3.7 46 13-58 227-286 (374)
99 2o8x_A Probable RNA polymerase 64.0 6.9 0.00024 25.7 3.6 42 73-115 18-59 (70)
100 1ku3_A Sigma factor SIGA; heli 60.6 8.6 0.00029 26.0 3.6 43 73-116 13-59 (73)
101 2p7v_B Sigma-70, RNA polymeras 57.0 8.9 0.00031 25.5 3.1 42 74-116 9-54 (68)
102 2rq5_A Protein jumonji; develo 55.1 4.5 0.00015 31.4 1.5 45 36-83 65-113 (121)
103 1u78_A TC3 transposase, transp 54.1 62 0.0021 23.7 9.2 88 16-109 6-101 (141)
104 2li6_A SWI/SNF chromatin-remod 53.7 7.8 0.00027 29.5 2.6 38 77-114 53-98 (116)
105 2li6_A SWI/SNF chromatin-remod 53.0 3.8 0.00013 31.3 0.7 39 24-63 53-98 (116)
106 2jrz_A Histone demethylase jar 52.3 17 0.00057 27.7 4.3 38 77-114 44-93 (117)
107 2lm1_A Lysine-specific demethy 51.4 19 0.00065 26.7 4.4 38 77-114 48-97 (107)
108 3hug_A RNA polymerase sigma fa 49.0 16 0.00054 25.8 3.6 41 73-114 40-80 (92)
109 2jrz_A Histone demethylase jar 47.2 10 0.00035 28.9 2.3 41 23-63 43-93 (117)
110 1ig6_A MRF-2, modulator recogn 47.1 6.1 0.00021 29.6 1.0 41 23-63 36-87 (107)
111 1kkx_A Transcription regulator 46.8 12 0.00042 28.9 2.8 39 78-116 53-99 (123)
112 2rq5_A Protein jumonji; develo 46.8 93 0.0032 23.8 7.9 79 11-115 4-97 (121)
113 2eqy_A RBP2 like, jumonji, at 46.2 23 0.00079 27.1 4.3 38 77-114 46-95 (122)
114 2cxy_A BAF250B subunit, HBAF25 45.3 24 0.00084 27.0 4.3 39 77-115 55-105 (125)
115 1c20_A DEAD ringer protein; DN 44.8 11 0.00036 29.2 2.1 40 24-63 56-106 (128)
116 2cxy_A BAF250B subunit, HBAF25 44.3 11 0.00037 29.1 2.1 40 24-63 55-104 (125)
117 2yqf_A Ankyrin-1; death domain 41.4 32 0.0011 25.6 4.4 35 71-106 14-48 (111)
118 3cz6_A DNA-binding protein RAP 41.2 21 0.00073 29.3 3.5 35 52-86 98-141 (168)
119 1x3u_A Transcriptional regulat 41.0 42 0.0014 22.4 4.6 43 70-115 17-59 (79)
120 2kk0_A AT-rich interactive dom 40.4 19 0.00065 28.5 3.0 40 24-63 68-118 (145)
121 1or7_A Sigma-24, RNA polymeras 40.3 31 0.0011 26.8 4.3 31 83-114 153-183 (194)
122 2q1z_A RPOE, ECF SIGE; ECF sig 39.3 20 0.0007 27.7 3.1 31 83-114 148-178 (184)
123 1tty_A Sigma-A, RNA polymerase 37.6 32 0.0011 24.0 3.6 41 74-115 22-66 (87)
124 2jxj_A Histone demethylase jar 36.8 16 0.00055 26.5 1.9 37 77-113 40-88 (96)
125 3ulq_B Transcriptional regulat 36.4 45 0.0016 23.7 4.3 46 67-115 27-72 (90)
126 2eqy_A RBP2 like, jumonji, at 36.3 15 0.0005 28.3 1.7 40 24-63 46-95 (122)
127 2kk0_A AT-rich interactive dom 36.1 41 0.0014 26.5 4.4 39 77-115 68-119 (145)
128 3c57_A Two component transcrip 35.5 45 0.0015 23.7 4.2 46 69-117 27-72 (95)
129 1c20_A DEAD ringer protein; DN 35.5 45 0.0015 25.5 4.4 39 77-115 56-107 (128)
130 2k27_A Paired box protein PAX- 34.9 1.5E+02 0.0051 22.5 9.7 77 15-96 24-111 (159)
131 2p1m_A SKP1-like protein 1A; F 34.7 24 0.00083 28.0 2.8 36 38-81 119-154 (160)
132 2of5_H Leucine-rich repeat and 34.5 33 0.0011 25.9 3.5 31 75-106 13-43 (118)
133 1fse_A GERE; helix-turn-helix 33.8 40 0.0014 22.1 3.5 45 68-115 10-54 (74)
134 3i4p_A Transcriptional regulat 33.8 12 0.00042 29.4 0.9 42 20-63 3-44 (162)
135 2of5_A Death domain-containing 32.9 40 0.0014 25.5 3.7 39 64-106 16-54 (114)
136 1je8_A Nitrate/nitrite respons 32.8 49 0.0017 22.8 3.9 44 69-115 21-64 (82)
137 1wxp_A THO complex subunit 1; 32.7 51 0.0018 24.4 4.3 31 75-106 18-48 (110)
138 2o71_A Death domain-containing 32.0 43 0.0015 25.4 3.7 29 77-106 26-54 (115)
139 1xsv_A Hypothetical UPF0122 pr 31.9 55 0.0019 24.2 4.3 41 73-114 28-68 (113)
140 2jpc_A SSRB; DNA binding prote 31.2 56 0.0019 20.6 3.8 38 76-115 4-41 (61)
141 1k78_A Paired box protein PAX5 30.6 1.7E+02 0.0057 21.8 7.7 79 14-96 30-118 (149)
142 1rp3_A RNA polymerase sigma fa 30.6 52 0.0018 26.2 4.3 39 75-114 192-230 (239)
143 3mzy_A RNA polymerase sigma-H 29.9 44 0.0015 24.8 3.5 30 84-114 122-151 (164)
144 3i4p_A Transcriptional regulat 28.9 52 0.0018 25.6 3.9 45 73-118 3-48 (162)
145 2rnj_A Response regulator prot 28.0 51 0.0017 23.0 3.4 44 69-115 29-72 (91)
146 3e7l_A Transcriptional regulat 25.5 86 0.0029 20.5 4.0 33 73-106 19-51 (63)
147 1p4w_A RCSB; solution structur 24.9 1.3E+02 0.0045 21.7 5.3 46 67-115 32-77 (99)
148 1ntc_A Protein (nitrogen regul 24.6 1E+02 0.0036 21.7 4.6 34 73-107 51-84 (91)
149 3v7d_A Suppressor of kinetocho 24.2 34 0.0011 27.5 1.9 35 38-80 127-161 (169)
150 2dn0_A Zinc fingers and homeob 23.8 1.7E+02 0.0059 19.7 6.1 54 60-114 5-62 (76)
151 3cz6_A DNA-binding protein RAP 22.7 47 0.0016 27.2 2.5 18 10-27 110-127 (168)
152 1s7o_A Hypothetical UPF0122 pr 22.0 90 0.0031 23.1 3.9 40 73-113 25-64 (113)
153 2dbb_A Putative HTH-type trans 21.4 1.3E+02 0.0044 22.7 4.8 45 73-118 9-54 (151)
154 1fad_A Protein (FADD protein); 21.3 50 0.0017 23.8 2.2 30 76-106 15-44 (99)
155 2e1c_A Putative HTH-type trans 21.3 42 0.0014 26.7 2.0 42 20-63 27-68 (171)
156 2ast_A S-phase kinase-associat 21.1 42 0.0014 26.4 1.9 55 18-80 95-154 (159)
157 2lfw_A PHYR sigma-like domain; 20.1 64 0.0022 24.6 2.8 40 74-114 97-136 (157)
No 1
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=100.00 E-value=6.4e-36 Score=232.19 Aligned_cols=104 Identities=41% Similarity=0.847 Sum_probs=99.9
Q ss_pred CCccCCCCHHHHHHHHHHHHHhCCCCcccccccccCccchhhhhhhhhcccCCCCCCCCCChHHHHHHHHHHHHhCCchH
Q 042846 11 GMKKGAWSKEEDDKLRAYILKYGHWNWGELPKFAGLSRCGKSCRLRWMNYLRPDIKHGNYTKEEEDTIIRLRQQHGNKWS 90 (243)
Q Consensus 11 ~lkKg~WT~EED~~L~~~V~~~g~~nW~~Ia~~l~~~Rt~kqcr~Rw~n~L~p~i~r~~WT~EED~~Ll~lv~~~G~~Ws 90 (243)
+++||+||+|||++|+.+|.+||..+|..||+.|+ +|+++||++||.++|+|.+++++||+|||++|+++|.+||++|+
T Consensus 1 ~l~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~-~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~ 79 (105)
T 1gv2_A 1 ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWA 79 (105)
T ss_dssp CCCCSCCCHHHHHHHHHHHHHHCTTCHHHHHTTST-TCCHHHHHHHHHHTTCCCCCCCCCCHHHHHHHHHHHHHHSSCHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCcHHHHhhhhc-CCCHHHHHHHHHhccCCcccccCCCHHHHHHHHHHHHHhCCCHH
Confidence 47899999999999999999999989999999998 99999999999999999999999999999999999999999999
Q ss_pred HhhccCCCCCHHHHHHHHHHhhccc
Q 042846 91 LIAAKLPGRTDNEIKNYWHTHLKKR 115 (243)
Q Consensus 91 ~Ia~~lpgRT~~q~knrw~~~lkk~ 115 (243)
.||+.|||||+++|++||+.+++++
T Consensus 80 ~Ia~~l~gRt~~~~k~rw~~~~~~~ 104 (105)
T 1gv2_A 80 EIAKLLPGRTDNAIKNHWNSTMRRK 104 (105)
T ss_dssp HHHTTCTTCCHHHHHHHHHHHTC--
T ss_pred HHHHHcCCCCHHHHHHHHHHHHhcc
Confidence 9999999999999999999999875
No 2
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=100.00 E-value=1.7e-35 Score=238.92 Aligned_cols=111 Identities=40% Similarity=0.751 Sum_probs=106.9
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCCcccccccccCccchhhhhhhhhcccCCCCCCCCCChHHHHHHHHHHHHhCCchHHhh
Q 042846 14 KGAWSKEEDDKLRAYILKYGHWNWGELPKFAGLSRCGKSCRLRWMNYLRPDIKHGNYTKEEEDTIIRLRQQHGNKWSLIA 93 (243)
Q Consensus 14 Kg~WT~EED~~L~~~V~~~g~~nW~~Ia~~l~~~Rt~kqcr~Rw~n~L~p~i~r~~WT~EED~~Ll~lv~~~G~~Ws~Ia 93 (243)
||+||+|||++|+.+|..||..+|..||+.|+ +|+++||++||.++|+|.+++++||.|||++|+++|.+||++|+.||
T Consensus 2 Kg~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~~Ia 80 (131)
T 3zqc_A 2 KGPFTEAEDDLIREYVKENGPQNWPRITSFLP-NRSPKQCRERWFNHLDPAVVKHAWTPEEDETIFRNYLKLGSKWSVIA 80 (131)
T ss_dssp CSSCCHHHHHHHHHHHHHHCSCCGGGGTTSCT-TSCHHHHHHHHHHHTSTTCCCSCCCHHHHHHHHHHHHHSCSCHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHhCcCCHHHHHHHHC-CCCHHHHHHHHhhccCccccCCCCCHHHHHHHHHHHHHHCcCHHHHH
Confidence 79999999999999999999889999999998 99999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCHHHHHHHHHHhhccccCCCCCCCCC
Q 042846 94 AKLPGRTDNEIKNYWHTHLKKRKNKDPASSSS 125 (243)
Q Consensus 94 ~~lpgRT~~q~knrw~~~lkk~~~k~~~s~~~ 125 (243)
++|||||+++|++||+++|++++....+..+.
T Consensus 81 ~~l~gRt~~~~k~rw~~~l~~~~~~~~~~~~~ 112 (131)
T 3zqc_A 81 KLIPGRTDNAIKNRWNSSISKRISTNSNHKEI 112 (131)
T ss_dssp TTSTTCCHHHHHHHHHHTTGGGCCCCTTSCCC
T ss_pred HHcCCCCHHHHHHHHHHHHHHHhhcCCCcccc
Confidence 99999999999999999999999888776554
No 3
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=100.00 E-value=1e-35 Score=232.41 Aligned_cols=105 Identities=30% Similarity=0.615 Sum_probs=101.2
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCCcccccccccCccchhhhhhhhhcccCCCCCCCCCChHHHHHHHHHHHHhCCchHHhh
Q 042846 14 KGAWSKEEDDKLRAYILKYGHWNWGELPKFAGLSRCGKSCRLRWMNYLRPDIKHGNYTKEEEDTIIRLRQQHGNKWSLIA 93 (243)
Q Consensus 14 Kg~WT~EED~~L~~~V~~~g~~nW~~Ia~~l~~~Rt~kqcr~Rw~n~L~p~i~r~~WT~EED~~Ll~lv~~~G~~Ws~Ia 93 (243)
||+||+|||++|+.+|.+||..+|..||+.|+ +|+++||++||.++|+|.+++++||.|||.+|+++|.+||++|+.||
T Consensus 1 K~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~L~p~i~~~~WT~eEd~~L~~~~~~~G~~W~~Ia 79 (107)
T 2k9n_A 1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMI-TRNPRQCRERWNNYINPALRTDPWSPEEDMLLDQKYAEYGPKWNKIS 79 (107)
T ss_dssp CCSSCHHHHHHHHHHHHHHCSSCHHHHHHHTT-TSCHHHHHHHHHHHSSSCCTTCCCCHHHHHHHHHHHHHTCSCHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHhhhcC-CCCHHHHHHHHHHHHcccccccccCHHHHHHHHHHHHHhCcCHHHHH
Confidence 79999999999999999999889999999999 99999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCHHHHHHHHHHhhccccCCC
Q 042846 94 AKLPGRTDNEIKNYWHTHLKKRKNKD 119 (243)
Q Consensus 94 ~~lpgRT~~q~knrw~~~lkk~~~k~ 119 (243)
+.|||||+++|++||+.++++..++.
T Consensus 80 ~~l~gRt~~~~k~rw~~l~r~~~~~~ 105 (107)
T 2k9n_A 80 KFLKNRSDNNIRNRWMMIARHRAKHQ 105 (107)
T ss_dssp HHHSSSCHHHHHHHHHHHHHHHHSST
T ss_pred HHCCCCCHHHHHHHHHHHHhhHHHhh
Confidence 99999999999999999998876553
No 4
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=100.00 E-value=3.9e-35 Score=235.54 Aligned_cols=110 Identities=38% Similarity=0.800 Sum_probs=103.1
Q ss_pred CCCCCCCCccCCCCHHHHHHHHHHHHHhCCCCcccccccccCccchhhhhhhhhcccCCCCCCCCCChHHHHHHHHHHHH
Q 042846 5 PTYDENGMKKGAWSKEEDDKLRAYILKYGHWNWGELPKFAGLSRCGKSCRLRWMNYLRPDIKHGNYTKEEEDTIIRLRQQ 84 (243)
Q Consensus 5 p~~~k~~lkKg~WT~EED~~L~~~V~~~g~~nW~~Ia~~l~~~Rt~kqcr~Rw~n~L~p~i~r~~WT~EED~~Ll~lv~~ 84 (243)
-.+.+|++++|+||+|||++|+.+|.+||..+|..||+.|+ +|+++||++||.++|+|.+++++||+|||++|++++.+
T Consensus 18 ~~~l~p~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~-~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~~~~ 96 (128)
T 1h8a_C 18 QKVLNPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLK-GRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKR 96 (128)
T ss_dssp ----CTTCCCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSS-SCCHHHHHHHHHHTTCSSSCCSCCCHHHHHHHHHHHHH
T ss_pred HHhhCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhc-CCcHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHH
Confidence 34568999999999999999999999999889999999998 99999999999999999999999999999999999999
Q ss_pred hCCchHHhhccCCCCCHHHHHHHHHHhhccc
Q 042846 85 HGNKWSLIAAKLPGRTDNEIKNYWHTHLKKR 115 (243)
Q Consensus 85 ~G~~Ws~Ia~~lpgRT~~q~knrw~~~lkk~ 115 (243)
||++|+.||++|||||+++|++||+.+++++
T Consensus 97 ~G~~W~~Ia~~l~gRt~~~~k~r~~~~~~~~ 127 (128)
T 1h8a_C 97 LGNRWAEIAKLLPGRTDNAVKNHWNSTMRRK 127 (128)
T ss_dssp HCSCHHHHGGGSTTCCHHHHHHHHHTTTTC-
T ss_pred HCcCHHHHHHHCCCCCHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999875
No 5
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=100.00 E-value=8.7e-35 Score=233.41 Aligned_cols=106 Identities=36% Similarity=0.655 Sum_probs=101.8
Q ss_pred CCCCCccCCCCHHHHHHHHHHHHHhCCCCcccccccccCccchhhhhhhhhcccCCCCCCCCCChHHHHHHHHHHHHhCC
Q 042846 8 DENGMKKGAWSKEEDDKLRAYILKYGHWNWGELPKFAGLSRCGKSCRLRWMNYLRPDIKHGNYTKEEEDTIIRLRQQHGN 87 (243)
Q Consensus 8 ~k~~lkKg~WT~EED~~L~~~V~~~g~~nW~~Ia~~l~~~Rt~kqcr~Rw~n~L~p~i~r~~WT~EED~~Ll~lv~~~G~ 87 (243)
.+.+.+||+||+|||++|+.+|.+||. +|..||+.|+ +|+++|||+||.++|+|.+++++||.|||++|+++|.+||+
T Consensus 5 ~~~~~kk~~WT~eED~~L~~~v~~~G~-~W~~Ia~~~~-~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~v~~~G~ 82 (126)
T 3osg_A 5 NLKAAKKQKFTPEEDEMLKRAVAQHGS-DWKMIAATFP-NRNARQCRDRWKNYLAPSISHTPWTAEEDALLVQKIQEYGR 82 (126)
T ss_dssp C-CBCSSCCCCHHHHHHHHHHHHHHTT-CHHHHHHTCT-TCCHHHHHHHHHHHTSTTSCCSCCCHHHHHHHHHHHHHHCS
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHhCC-CHHHHHHHcC-CCCHHHHHHHHhhhcccccccccCCHHHHHHHHHHHHHHCc
Confidence 367899999999999999999999998 9999999998 99999999999999999999999999999999999999999
Q ss_pred chHHhhccCCCCCHHHHHHHHHHhhccc
Q 042846 88 KWSLIAAKLPGRTDNEIKNYWHTHLKKR 115 (243)
Q Consensus 88 ~Ws~Ia~~lpgRT~~q~knrw~~~lkk~ 115 (243)
+|+.||+.|||||+++||+||+.++++.
T Consensus 83 ~W~~Ia~~l~gRt~~~~k~rw~~l~~k~ 110 (126)
T 3osg_A 83 QWAIIAKFFPGRTDIHIKNRWVTISNKL 110 (126)
T ss_dssp CHHHHHTTSTTCCHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHhc
Confidence 9999999999999999999999988864
No 6
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=99.98 E-value=7.7e-33 Score=229.58 Aligned_cols=108 Identities=40% Similarity=0.800 Sum_probs=104.1
Q ss_pred CCCCCCccCCCCHHHHHHHHHHHHHhCCCCcccccccccCccchhhhhhhhhcccCCCCCCCCCChHHHHHHHHHHHHhC
Q 042846 7 YDENGMKKGAWSKEEDDKLRAYILKYGHWNWGELPKFAGLSRCGKSCRLRWMNYLRPDIKHGNYTKEEEDTIIRLRQQHG 86 (243)
Q Consensus 7 ~~k~~lkKg~WT~EED~~L~~~V~~~g~~nW~~Ia~~l~~~Rt~kqcr~Rw~n~L~p~i~r~~WT~EED~~Ll~lv~~~G 86 (243)
+.+|++++|+||+|||++|+.+|.+||..+|..||+.|+ +|+++||+.||.++|+|.+++++||+|||.+|++++.+||
T Consensus 51 ~l~p~~~~~~Wt~eEd~~L~~~v~~~g~~~W~~Ia~~l~-~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~~~~~g 129 (159)
T 1h89_C 51 VLNPELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLG 129 (159)
T ss_dssp TTCTTCCCSCCCHHHHHHHHHHHHHHCSCCHHHHHHTST-TCCHHHHHHHHHHTTCTTSCCSCCCHHHHHHHHHHHHHHC
T ss_pred ccCCCcCCCCCChHHHHHHHHHHHHhCcccHHHHHHHcC-CCCHHHHHHHHHHHhCccccccCCChHHHHHHHHHHHHHC
Confidence 568899999999999999999999999878999999998 9999999999999999999999999999999999999999
Q ss_pred CchHHhhccCCCCCHHHHHHHHHHhhccc
Q 042846 87 NKWSLIAAKLPGRTDNEIKNYWHTHLKKR 115 (243)
Q Consensus 87 ~~Ws~Ia~~lpgRT~~q~knrw~~~lkk~ 115 (243)
++|+.||+.|||||+++|||||+.+++++
T Consensus 130 ~~W~~Ia~~l~gRt~~~~knr~~~~~r~~ 158 (159)
T 1h89_C 130 NRWAEIAKLLPGRTDNAIKNHWNSTMRRK 158 (159)
T ss_dssp SCHHHHHTTSTTCCHHHHHHHHHTTTCC-
T ss_pred CCHHHHHHHCCCCCHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999875
No 7
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=99.97 E-value=6.2e-33 Score=230.14 Aligned_cols=114 Identities=32% Similarity=0.696 Sum_probs=71.5
Q ss_pred CccCCCCHHHHHHHHHHHHHhCCCCcccccccccCccchhhhhhhhhcccCCCCCCCCCChHHHHHHHHHHHHhCC-chH
Q 042846 12 MKKGAWSKEEDDKLRAYILKYGHWNWGELPKFAGLSRCGKSCRLRWMNYLRPDIKHGNYTKEEEDTIIRLRQQHGN-KWS 90 (243)
Q Consensus 12 lkKg~WT~EED~~L~~~V~~~g~~nW~~Ia~~l~~~Rt~kqcr~Rw~n~L~p~i~r~~WT~EED~~Ll~lv~~~G~-~Ws 90 (243)
++||+||+|||++|+.+|.+||..+|..||+.|+ +|+++||++||.++|+|.+++++||+|||++|+++|..||. +|.
T Consensus 4 ~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~-~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~v~~~g~~~W~ 82 (159)
T 1h89_C 4 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLP-NRTDVQCQHRWQKVLNPELIKGPWTKEEDQRVIKLVQKYGPKRWS 82 (159)
T ss_dssp ----------------------------------------CHHHHHHTTTCTTCCCSCCCHHHHHHHHHHHHHHCSCCHH
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcC-CCCHHHHHHHHHHccCCCcCCCCCChHHHHHHHHHHHHhCcccHH
Confidence 6799999999999999999999889999999998 99999999999999999999999999999999999999996 699
Q ss_pred HhhccCCCCCHHHHHHHHHHhhccccCCCCCCCCCc
Q 042846 91 LIAAKLPGRTDNEIKNYWHTHLKKRKNKDPASSSST 126 (243)
Q Consensus 91 ~Ia~~lpgRT~~q~knrw~~~lkk~~~k~~~s~~~~ 126 (243)
.||..|||||+.||++||+++|++.+++.+|+.++.
T Consensus 83 ~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd 118 (159)
T 1h89_C 83 VIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEED 118 (159)
T ss_dssp HHHHTSTTCCHHHHHHHHHHTTCTTSCCSCCCHHHH
T ss_pred HHHHHcCCCCHHHHHHHHHHHhCccccccCCChHHH
Confidence 999999999999999999999999999999987553
No 8
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=99.89 E-value=7.9e-24 Score=169.62 Aligned_cols=86 Identities=30% Similarity=0.622 Sum_probs=61.8
Q ss_pred ccccccCccchhhhhhhhhcccCCCCCCCCCChHHHHHHHHHHHHhCC-chHHhhccCCCCCHHHHHHHHHHhhccccCC
Q 042846 40 LPKFAGLSRCGKSCRLRWMNYLRPDIKHGNYTKEEEDTIIRLRQQHGN-KWSLIAAKLPGRTDNEIKNYWHTHLKKRKNK 118 (243)
Q Consensus 40 Ia~~l~~~Rt~kqcr~Rw~n~L~p~i~r~~WT~EED~~Ll~lv~~~G~-~Ws~Ia~~lpgRT~~q~knrw~~~lkk~~~k 118 (243)
||+.|+ +|+++||++||.++|+|.+++++||+|||++|+++|..||. +|..||..|||||+.||++||+++|++.+++
T Consensus 1 Ia~~~~-~Rt~~qC~~Rw~~~l~p~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~ 79 (128)
T 1h8a_C 1 MEAVIK-NRTDVQCQHRWQKVLNPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRERWHNHLNPEVKK 79 (128)
T ss_dssp ----------------------CTTCCCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSSSCCHHHHHHHHHHTTCSSSCC
T ss_pred CccccC-CCCHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhcCCcHHHHHHHHHHhccccccc
Confidence 788898 99999999999999999999999999999999999999995 6999999999999999999999999999999
Q ss_pred CCCCCCCc
Q 042846 119 DPASSSST 126 (243)
Q Consensus 119 ~~~s~~~~ 126 (243)
++|+.++.
T Consensus 80 ~~WT~eEd 87 (128)
T 1h8a_C 80 TSWTEEED 87 (128)
T ss_dssp SCCCHHHH
T ss_pred ccCCHHHH
Confidence 99987654
No 9
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.87 E-value=3.3e-23 Score=150.09 Aligned_cols=66 Identities=29% Similarity=0.718 Sum_probs=63.6
Q ss_pred CCCCccCCCCHHHHHHHHHHHHHhCCCCcccccccccCccchhhhhhhhhcccCCCCCCCCCChHHH
Q 042846 9 ENGMKKGAWSKEEDDKLRAYILKYGHWNWGELPKFAGLSRCGKSCRLRWMNYLRPDIKHGNYTKEEE 75 (243)
Q Consensus 9 k~~lkKg~WT~EED~~L~~~V~~~g~~nW~~Ia~~l~~~Rt~kqcr~Rw~n~L~p~i~r~~WT~EED 75 (243)
.+++++|+||+|||++|+.+|.+||..+|..||+.|+ +|+++|||+||.++|+|.+++++||.|||
T Consensus 4 ~~~~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~-~Rt~~qcr~Rw~~~L~p~i~~~~wt~eEd 69 (70)
T 2dim_A 4 GSSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLH-RKSAKQCKARWYEWLDPSIKKTEWSGPSS 69 (70)
T ss_dssp CSCSTTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHST-TCCHHHHHHHHHHTSCSSSCCCCSCCSCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhc-CCCHHHHHHHHHHHcCCcccCCCCChHhc
Confidence 4679999999999999999999999779999999999 99999999999999999999999999997
No 10
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=99.78 E-value=1.7e-19 Score=158.08 Aligned_cols=105 Identities=17% Similarity=0.308 Sum_probs=92.1
Q ss_pred CCCccCCCCHHHHHHHHHHHHHhCCCC-----cccccccccCccchhhhhhhhhcccCCCCC------------------
Q 042846 10 NGMKKGAWSKEEDDKLRAYILKYGHWN-----WGELPKFAGLSRCGKSCRLRWMNYLRPDIK------------------ 66 (243)
Q Consensus 10 ~~lkKg~WT~EED~~L~~~V~~~g~~n-----W~~Ia~~l~~~Rt~kqcr~Rw~n~L~p~i~------------------ 66 (243)
+.++|++||+|||++|+++|+++|..+ |..||++|+ |||+.|||.||+++|++.++
T Consensus 4 ~~~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~Lp-GRT~nsIRnRw~~~L~~~ln~vy~~ded~~Li~d~~Gn 82 (246)
T 1ign_A 4 PSHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVP-NHTGNSIRHRFRVYLSKRLEYVYEVDKFGKLVRDDDGN 82 (246)
T ss_dssp ----CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTST-TSCHHHHHHHHHHTTGGGCCCEECBCTTSCBCBCTTSC
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcC-CCCHHHHHHHHHHHHhhhcccccccCcchhhhhccCCC
Confidence 467899999999999999999997742 999999999 99999999999999999986
Q ss_pred -----------CCCCChHHHHHHHHHHHH-h--------------------------------CC---------------
Q 042846 67 -----------HGNYTKEEEDTIIRLRQQ-H--------------------------------GN--------------- 87 (243)
Q Consensus 67 -----------r~~WT~EED~~Ll~lv~~-~--------------------------------G~--------------- 87 (243)
+..||.+||-.|...+.+ | |.
T Consensus 83 ~ikis~lp~siK~rftaeeDy~L~~~i~~~f~~~~~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~ 162 (246)
T 1ign_A 83 LIKTKVLPPSIKRKFSADEDYTLAIAVKKQFYRDLFQIDPDTGRSLITDEDTPTAIARRNMTMDPNHVPGSEPNFAAYRT 162 (246)
T ss_dssp BCEESSCCCCSCCCCCHHHHHHHHHHHHHHHHHHHHCBCSSSCCBCC-------------------------------CC
T ss_pred ceeeeccCccccCccchhccHHHHHHHHHHHhhhhhhcCccccccccccccchhhhhhhhcccCccccccCCcchhhhcc
Confidence 789999999999998876 2 11
Q ss_pred ----------chHHhhccCCCCCHHHHHHHHHHhhccc
Q 042846 88 ----------KWSLIAAKLPGRTDNEIKNYWHTHLKKR 115 (243)
Q Consensus 88 ----------~Ws~Ia~~lpgRT~~q~knrw~~~lkk~ 115 (243)
.|.+||+.+|+||.+.+|+||+..|+..
T Consensus 163 ~~~~gp~~~~~fk~ia~~~P~HT~~SWRdRyrKfl~~~ 200 (246)
T 1ign_A 163 QSRRGPIAREFFKHFAEEHAAHTENAWRDRFRKFLLAY 200 (246)
T ss_dssp CCCCCCCCTTHHHHHHHHTTTSCHHHHHHHHHHTHHHH
T ss_pred ccccCcchHHHHHHHHHHCCCCChhhHHHHHHHHHhhc
Confidence 6999999999999999999999988765
No 11
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=99.76 E-value=3e-19 Score=130.87 Aligned_cols=60 Identities=28% Similarity=0.464 Sum_probs=47.7
Q ss_pred hhhhhhcccCCCCCCCCCChHHHHHHHHHHHHhCCchHHhhccCCCCCHHHHHHHHHHhhc
Q 042846 53 CRLRWMNYLRPDIKHGNYTKEEEDTIIRLRQQHGNKWSLIAAKLPGRTDNEIKNYWHTHLK 113 (243)
Q Consensus 53 cr~Rw~n~L~p~i~r~~WT~EED~~Ll~lv~~~G~~Ws~Ia~~lpgRT~~q~knrw~~~lk 113 (243)
.--||.++|+|.+++++||+|||++|+++|.+||++|+.||+.| |||++|||+||+.+.+
T Consensus 9 ~~~~~~~~ldP~i~k~~wT~EED~~L~~l~~~~G~kW~~IA~~l-gRt~~q~knRw~~L~~ 68 (73)
T 2llk_A 9 SGRENLYFQGDRNHVGKYTPEEIEKLKELRIKHGNDWATIGAAL-GRSASSVKDRCRLMKD 68 (73)
T ss_dssp ----------CCCCCCSSCHHHHHHHHHHHHHHSSCHHHHHHHH-TSCHHHHHHHHHHCSC
T ss_pred cCcceeeecCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHh-CCCHHHHHHHHHHHHH
Confidence 34589999999999999999999999999999999999999999 9999999999986443
No 12
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=3.7e-18 Score=123.40 Aligned_cols=64 Identities=25% Similarity=0.352 Sum_probs=61.1
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHhC-CchHHhhccCCCCCHHHHHHHHHHhhccccCCCCCCCCC
Q 042846 62 RPDIKHGNYTKEEEDTIIRLRQQHG-NKWSLIAAKLPGRTDNEIKNYWHTHLKKRKNKDPASSSS 125 (243)
Q Consensus 62 ~p~i~r~~WT~EED~~Ll~lv~~~G-~~Ws~Ia~~lpgRT~~q~knrw~~~lkk~~~k~~~s~~~ 125 (243)
.|.+++++||.|||++|+++|.+|| ++|..||.+|+|||+.||++||+++|++.+++.+|+.++
T Consensus 4 ~~~~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~~Rt~~qcr~Rw~~~L~p~i~~~~wt~eE 68 (70)
T 2dim_A 4 GSSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPSIKKTEWSGPS 68 (70)
T ss_dssp CSCSTTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHSTTCCHHHHHHHHHHTSCSSSCCCCSCCSC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhcCCCHHHHHHHHHHHcCCcccCCCCChHh
Confidence 4788999999999999999999999 799999999999999999999999999999999999765
No 13
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=99.74 E-value=1.3e-18 Score=122.15 Aligned_cols=57 Identities=28% Similarity=0.623 Sum_probs=54.1
Q ss_pred CCCCccCCCCHHHHHHHHHHHHHhCCCCcccccccccCccchhhhhhhhhcccCCCCC
Q 042846 9 ENGMKKGAWSKEEDDKLRAYILKYGHWNWGELPKFAGLSRCGKSCRLRWMNYLRPDIK 66 (243)
Q Consensus 9 k~~lkKg~WT~EED~~L~~~V~~~g~~nW~~Ia~~l~~~Rt~kqcr~Rw~n~L~p~i~ 66 (243)
.|++++|+||+|||++|+++|.+||..+|..||+.|+ +|++.||++||.++|+|.++
T Consensus 3 ~p~~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~l~p~i~ 59 (60)
T 2d9a_A 3 SGSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFP-NRTDQQCQYRWLRVLSGPSS 59 (60)
T ss_dssp SCCCCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCS-SSCHHHHHHHHHHTSCSSSC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcc-CCCHHHHHHHHHHHcCCccC
Confidence 4679999999999999999999999779999999998 99999999999999999875
No 14
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=99.74 E-value=1.5e-18 Score=118.55 Aligned_cols=52 Identities=44% Similarity=0.891 Sum_probs=49.8
Q ss_pred CccCCCCHHHHHHHHHHHHHhCCCCcccccccccCccchhhhhhhhhcccCCC
Q 042846 12 MKKGAWSKEEDDKLRAYILKYGHWNWGELPKFAGLSRCGKSCRLRWMNYLRPD 64 (243)
Q Consensus 12 lkKg~WT~EED~~L~~~V~~~g~~nW~~Ia~~l~~~Rt~kqcr~Rw~n~L~p~ 64 (243)
++||+||+|||++|+++|.+||..+|..||+.|+ +|+++||++||.++|+|+
T Consensus 1 l~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~L~P~ 52 (52)
T 1gvd_A 1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPE 52 (52)
T ss_dssp CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTST-TCCHHHHHHHHHHTTSCC
T ss_pred CCCCCCCHHHHHHHHHHHHHHCcChHHHHHHHcC-CCCHHHHHHHHHHHcCcC
Confidence 5799999999999999999999888999999998 999999999999999984
No 15
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=99.73 E-value=9.1e-19 Score=139.67 Aligned_cols=83 Identities=13% Similarity=0.210 Sum_probs=77.6
Q ss_pred CCCCCccCCCCHHHHHHHHHHHHHhCCCCcccccccc----cCccchhhhhhhhhcccC-----CCCCCC-CCChHHHHH
Q 042846 8 DENGMKKGAWSKEEDDKLRAYILKYGHWNWGELPKFA----GLSRCGKSCRLRWMNYLR-----PDIKHG-NYTKEEEDT 77 (243)
Q Consensus 8 ~k~~lkKg~WT~EED~~L~~~V~~~g~~nW~~Ia~~l----~~~Rt~kqcr~Rw~n~L~-----p~i~r~-~WT~EED~~ 77 (243)
..+..++++||+|||+.|+.+|.+||.++|..|++.+ + +||+.||++||.++|+ |.++++ +|+++|+.+
T Consensus 11 ~~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~-~RT~v~lKdRWrnllk~~~~~p~~krg~~~p~e~~~r 89 (121)
T 2juh_A 11 LSQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNAD-HRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDR 89 (121)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCS-SCCSHHHHHHHHHHHHHHHTCSTTCCCSCCCHHHHHH
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccC-CCCHHHHHHHHHHHHhhhccCCcccCCCCCCHHHHHH
Confidence 3467889999999999999999999999999999975 5 8999999999999998 999999 999999999
Q ss_pred HHHHHHHhCCchHH
Q 042846 78 IIRLRQQHGNKWSL 91 (243)
Q Consensus 78 Ll~lv~~~G~~Ws~ 91 (243)
|+.++..+|++|++
T Consensus 90 v~~~h~~~gn~~~~ 103 (121)
T 2juh_A 90 VLAAHAYWSQQQGK 103 (121)
T ss_dssp HHHHHHHHHHHHCC
T ss_pred HHHHHHHHccchhc
Confidence 99999999999987
No 16
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=2.9e-18 Score=122.66 Aligned_cols=61 Identities=23% Similarity=0.392 Sum_probs=57.9
Q ss_pred cccCCCCCCCCCChHHHHHHHHHHHHhCCchHHhhccCCCCCHHHHHHHHHHhhccccCCCC
Q 042846 59 NYLRPDIKHGNYTKEEEDTIIRLRQQHGNKWSLIAAKLPGRTDNEIKNYWHTHLKKRKNKDP 120 (243)
Q Consensus 59 n~L~p~i~r~~WT~EED~~Ll~lv~~~G~~Ws~Ia~~lpgRT~~q~knrw~~~lkk~~~k~~ 120 (243)
.+|+|.+++++||.|||++|+++|+.+|++|..||+ ++|||++|||+||+.+|++.+++..
T Consensus 1 g~L~P~~~k~~WT~eED~~L~~~~~~~g~~W~~Ia~-~~gRt~~qcr~Rw~~~l~~~~~~~~ 61 (66)
T 2din_A 1 GSSGSSGKKTEWSREEEEKLLHLAKLMPTQWRTIAP-IIGRTAAQCLEHYEFLLDKAAQRDS 61 (66)
T ss_dssp CCCSSSSSCCCCCHHHHHHHHHHHHHCTTCHHHHHH-HHSSCHHHHHHHHHHHHHHHHHSSS
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHcCCCHHHHhc-ccCcCHHHHHHHHHHHhChHhcCCC
Confidence 379999999999999999999999999999999999 8899999999999999999888764
No 17
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.71 E-value=1.2e-17 Score=121.41 Aligned_cols=58 Identities=19% Similarity=0.245 Sum_probs=55.9
Q ss_pred cCCCCCCCCCChHHHHHHHHHHHHhCCchHHhhccCCCCCHHHHHHHHHHhhccccCC
Q 042846 61 LRPDIKHGNYTKEEEDTIIRLRQQHGNKWSLIAAKLPGRTDNEIKNYWHTHLKKRKNK 118 (243)
Q Consensus 61 L~p~i~r~~WT~EED~~Ll~lv~~~G~~Ws~Ia~~lpgRT~~q~knrw~~~lkk~~~k 118 (243)
++|.+++++||.|||++|+++|.+||++|..||++|||||++|||+||+.++++..+.
T Consensus 3 ~~p~~~~~~WT~eEd~~l~~~~~~~G~~W~~Ia~~~~~Rt~~q~k~r~~~~l~~~~~~ 60 (72)
T 2cu7_A 3 SGSSGYSVKWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKVKC 60 (72)
T ss_dssp CCCSSCCCCCCHHHHHHHHHHHHHTCSCHHHHHHHHSSSCHHHHHHHHHHHHHHHSCS
T ss_pred CCCCcCCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHHHHhc
Confidence 5789999999999999999999999999999999999999999999999999998777
No 18
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=99.71 E-value=2.9e-18 Score=116.95 Aligned_cols=52 Identities=29% Similarity=0.730 Sum_probs=48.5
Q ss_pred CccCCCCHHHHHHHHHHHHHhCCCCcccccccccCccchhhhhhhhhcccCCC
Q 042846 12 MKKGAWSKEEDDKLRAYILKYGHWNWGELPKFAGLSRCGKSCRLRWMNYLRPD 64 (243)
Q Consensus 12 lkKg~WT~EED~~L~~~V~~~g~~nW~~Ia~~l~~~Rt~kqcr~Rw~n~L~p~ 64 (243)
+++|+||+|||++|+++|.+||..+|..||+.|+ +|++.||++||.++|+|+
T Consensus 1 i~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~L~P~ 52 (52)
T 1guu_A 1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLP-NRTDVQCQHRWQKVLNPE 52 (52)
T ss_dssp --CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTST-TCCHHHHHHHHHHHHSCC
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcC-CCCHHHHHHHHHHHcCcC
Confidence 5799999999999999999999989999999998 999999999999999984
No 19
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=99.71 E-value=9e-18 Score=134.08 Aligned_cols=78 Identities=14% Similarity=0.223 Sum_probs=72.5
Q ss_pred CCCccCCCCHHHHHHHHHHHHHhCCCCcccccccc----cCccchhhhhhhhhccc-----CCCCCCCCCChHH-HHHHH
Q 042846 10 NGMKKGAWSKEEDDKLRAYILKYGHWNWGELPKFA----GLSRCGKSCRLRWMNYL-----RPDIKHGNYTKEE-EDTII 79 (243)
Q Consensus 10 ~~lkKg~WT~EED~~L~~~V~~~g~~nW~~Ia~~l----~~~Rt~kqcr~Rw~n~L-----~p~i~r~~WT~EE-D~~Ll 79 (243)
...++++||+|||+.|+++|++||.++|..|++.+ + +||+.||++||.|++ +|.++++.|+++| +.+|+
T Consensus 27 ~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~-~RT~vdlKdRWrnllk~~~~~p~~kr~~~~p~e~~~~v~ 105 (122)
T 2roh_A 27 QRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVH-HRTYVDLKDKWKTLVHTASIAPQQRRGAPVPQELLDRVL 105 (122)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSC-CCCHHHHHHHHHHHHHHHHSCTTTCCCSSCCHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccC-CCCHHHHHHHHHHHHhhccCCccccCCCCCCHHHHHHHH
Confidence 45678999999999999999999999999999864 5 899999999999999 8999999999999 89999
Q ss_pred HHHHHhCCc
Q 042846 80 RLRQQHGNK 88 (243)
Q Consensus 80 ~lv~~~G~~ 88 (243)
.++..+|++
T Consensus 106 ~~h~~~g~~ 114 (122)
T 2roh_A 106 AAQAYWSVD 114 (122)
T ss_dssp HHHHHHHSS
T ss_pred HHHHHHhhH
Confidence 999999975
No 20
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=99.70 E-value=2.1e-17 Score=115.92 Aligned_cols=56 Identities=25% Similarity=0.509 Sum_probs=52.7
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHhC-CchHHhhccCCCCCHHHHHHHHHHhhccccC
Q 042846 62 RPDIKHGNYTKEEEDTIIRLRQQHG-NKWSLIAAKLPGRTDNEIKNYWHTHLKKRKN 117 (243)
Q Consensus 62 ~p~i~r~~WT~EED~~Ll~lv~~~G-~~Ws~Ia~~lpgRT~~q~knrw~~~lkk~~~ 117 (243)
+|.+++++||+|||++|+++|.+|| ++|+.||.+|+|||+.||++||+++|++.++
T Consensus 3 ~p~~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~i~ 59 (60)
T 2d9a_A 3 SGSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRWLRVLSGPSS 59 (60)
T ss_dssp SCCCCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCSSSCHHHHHHHHHHTSCSSSC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHccCCCHHHHHHHHHHHcCCccC
Confidence 5789999999999999999999999 6999999999999999999999999998754
No 21
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=99.69 E-value=1.1e-17 Score=120.75 Aligned_cols=63 Identities=25% Similarity=0.440 Sum_probs=58.1
Q ss_pred CCCCccCCCCHHHHHHHHHHHHHhCCCCcccccccccC-ccchhhhhhhhhcccCCCCCCCCCC
Q 042846 9 ENGMKKGAWSKEEDDKLRAYILKYGHWNWGELPKFAGL-SRCGKSCRLRWMNYLRPDIKHGNYT 71 (243)
Q Consensus 9 k~~lkKg~WT~EED~~L~~~V~~~g~~nW~~Ia~~l~~-~Rt~kqcr~Rw~n~L~p~i~r~~WT 71 (243)
++..++|+||+|||++|+.+|.+||..+|..||+.++. +|++.||++||.++|+|.+.++..+
T Consensus 5 ~~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~p~i~k~~~~ 68 (69)
T 1ity_A 5 HRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLKLISSDSE 68 (69)
T ss_dssp TCSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHHHHHHHTSCCCCCCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHHHHHcCCCCCCCCCC
Confidence 56788999999999999999999998899999999975 7999999999999999999988754
No 22
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=99.67 E-value=7e-17 Score=110.05 Aligned_cols=50 Identities=32% Similarity=0.688 Sum_probs=46.7
Q ss_pred CCCCCCChHHHHHHHHHHHHhCC-chHHhhccCCCCCHHHHHHHHHHhhcc
Q 042846 65 IKHGNYTKEEEDTIIRLRQQHGN-KWSLIAAKLPGRTDNEIKNYWHTHLKK 114 (243)
Q Consensus 65 i~r~~WT~EED~~Ll~lv~~~G~-~Ws~Ia~~lpgRT~~q~knrw~~~lkk 114 (243)
+++++||.|||++|+++|.+||. +|+.||+.|+|||+.||++||+++|++
T Consensus 1 i~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P 51 (52)
T 1guu_A 1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNP 51 (52)
T ss_dssp --CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHHHHHHSC
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCCCCHHHHHHHHHHHcCc
Confidence 47899999999999999999998 999999999999999999999999986
No 23
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=99.66 E-value=1.5e-16 Score=114.69 Aligned_cols=61 Identities=21% Similarity=0.254 Sum_probs=56.5
Q ss_pred ccCCCCCCCCCChHHHHHHHHHHHHhC-CchHHhhccCC--CCCHHHHHHHHHHhhccccCCCC
Q 042846 60 YLRPDIKHGNYTKEEEDTIIRLRQQHG-NKWSLIAAKLP--GRTDNEIKNYWHTHLKKRKNKDP 120 (243)
Q Consensus 60 ~L~p~i~r~~WT~EED~~Ll~lv~~~G-~~Ws~Ia~~lp--gRT~~q~knrw~~~lkk~~~k~~ 120 (243)
...+..++++||+|||++|+++|.+|| ++|+.||..|+ |||+.||++||+++|++.+.+..
T Consensus 3 ~~~~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~p~i~k~~ 66 (69)
T 1ity_A 3 EKHRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLKLISSD 66 (69)
T ss_dssp CTTCSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHHHHHHHTSCCCCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHHHHHcCCCCCCCC
Confidence 456778899999999999999999999 69999999999 99999999999999999988754
No 24
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=99.66 E-value=1.4e-16 Score=108.60 Aligned_cols=50 Identities=40% Similarity=0.816 Sum_probs=47.5
Q ss_pred CCCCCCChHHHHHHHHHHHHhCC-chHHhhccCCCCCHHHHHHHHHHhhcc
Q 042846 65 IKHGNYTKEEEDTIIRLRQQHGN-KWSLIAAKLPGRTDNEIKNYWHTHLKK 114 (243)
Q Consensus 65 i~r~~WT~EED~~Ll~lv~~~G~-~Ws~Ia~~lpgRT~~q~knrw~~~lkk 114 (243)
+++++||+|||++|+++|.+||. +|..||..|+|||+.||++||+++|++
T Consensus 1 l~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P 51 (52)
T 1gvd_A 1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNP 51 (52)
T ss_dssp CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTSC
T ss_pred CCCCCCCHHHHHHHHHHHHHHCcChHHHHHHHcCCCCHHHHHHHHHHHcCc
Confidence 57899999999999999999997 699999999999999999999999986
No 25
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.66 E-value=5.1e-17 Score=114.27 Aligned_cols=55 Identities=16% Similarity=0.441 Sum_probs=51.5
Q ss_pred CCCccCCCCHHHHHHHHHHHHHhCCCCcccccccccCccchhhhhhhhhcccCCCC
Q 042846 10 NGMKKGAWSKEEDDKLRAYILKYGHWNWGELPKFAGLSRCGKSCRLRWMNYLRPDI 65 (243)
Q Consensus 10 ~~lkKg~WT~EED~~L~~~V~~~g~~nW~~Ia~~l~~~Rt~kqcr~Rw~n~L~p~i 65 (243)
+++.+++||+|||++|+++|.+||..+|..||+.|+ +||++||++||.++|.+..
T Consensus 4 ~~~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~-~Rt~~qcr~r~~~~l~~~~ 58 (60)
T 1x41_A 4 GSSGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMC-TKTKEECEKHYMKYFSGPS 58 (60)
T ss_dssp CCCCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHT-TSCHHHHHHHHHHHTTCSS
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhC-CCCHHHHHHHHHHHccCCC
Confidence 578999999999999999999999779999999999 9999999999999998653
No 26
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=99.65 E-value=3.8e-17 Score=116.72 Aligned_cols=56 Identities=29% Similarity=0.479 Sum_probs=49.7
Q ss_pred CCccCCCCHHHHHHHHHHHHHhCCCCccccccccc-CccchhhhhhhhhcccCCCCC
Q 042846 11 GMKKGAWSKEEDDKLRAYILKYGHWNWGELPKFAG-LSRCGKSCRLRWMNYLRPDIK 66 (243)
Q Consensus 11 ~lkKg~WT~EED~~L~~~V~~~g~~nW~~Ia~~l~-~~Rt~kqcr~Rw~n~L~p~i~ 66 (243)
..+|++||+|||++|+++|.+||..+|..||+.++ .+|++.||++||.++++|.++
T Consensus 8 ~~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k~glN 64 (64)
T 3sjm_A 8 ITKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGMN 64 (64)
T ss_dssp --CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTTCC
T ss_pred CCCCCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHHhccCCC
Confidence 46899999999999999999999889999999754 379999999999999998774
No 27
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.64 E-value=2.2e-17 Score=117.99 Aligned_cols=59 Identities=20% Similarity=0.317 Sum_probs=54.7
Q ss_pred CCCCCCccCCCCHHHHHHHHHHHHHhCCCCcccccccccCccchhhhhhhhhcccCCCCCCC
Q 042846 7 YDENGMKKGAWSKEEDDKLRAYILKYGHWNWGELPKFAGLSRCGKSCRLRWMNYLRPDIKHG 68 (243)
Q Consensus 7 ~~k~~lkKg~WT~EED~~L~~~V~~~g~~nW~~Ia~~l~~~Rt~kqcr~Rw~n~L~p~i~r~ 68 (243)
+++|.+++++||+|||++|+.+|..||. +|..||+ ++ +||++||+.||.++|+|.++++
T Consensus 2 ~L~P~~~k~~WT~eED~~L~~~~~~~g~-~W~~Ia~-~~-gRt~~qcr~Rw~~~l~~~~~~~ 60 (66)
T 2din_A 2 SSGSSGKKTEWSREEEEKLLHLAKLMPT-QWRTIAP-II-GRTAAQCLEHYEFLLDKAAQRD 60 (66)
T ss_dssp CCSSSSSCCCCCHHHHHHHHHHHHHCTT-CHHHHHH-HH-SSCHHHHHHHHHHHHHHHHHSS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHcCC-CHHHHhc-cc-CcCHHHHHHHHHHHhChHhcCC
Confidence 5789999999999999999999999998 9999999 66 7999999999999999877654
No 28
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=99.63 E-value=3.2e-16 Score=107.40 Aligned_cols=50 Identities=26% Similarity=0.395 Sum_probs=46.7
Q ss_pred CCCCCChHHHHHHHHHHHHhC-CchHHhhccCC--CCCHHHHHHHHHHhhccc
Q 042846 66 KHGNYTKEEEDTIIRLRQQHG-NKWSLIAAKLP--GRTDNEIKNYWHTHLKKR 115 (243)
Q Consensus 66 ~r~~WT~EED~~Ll~lv~~~G-~~Ws~Ia~~lp--gRT~~q~knrw~~~lkk~ 115 (243)
++++||+|||++|+++|.+|| ++|+.||..|+ |||+.||++||+++++.+
T Consensus 1 kr~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~k~k 53 (53)
T 1w0t_A 1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLK 53 (53)
T ss_dssp CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHTC-
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCCCHHHHHHHHHHHHccC
Confidence 478999999999999999999 69999999999 999999999999998754
No 29
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.62 E-value=5.1e-16 Score=109.10 Aligned_cols=54 Identities=15% Similarity=0.266 Sum_probs=50.5
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHhC-CchHHhhccCCCCCHHHHHHHHHHhhccc
Q 042846 62 RPDIKHGNYTKEEEDTIIRLRQQHG-NKWSLIAAKLPGRTDNEIKNYWHTHLKKR 115 (243)
Q Consensus 62 ~p~i~r~~WT~EED~~Ll~lv~~~G-~~Ws~Ia~~lpgRT~~q~knrw~~~lkk~ 115 (243)
.+.+.+++||+|||++|+++|.+|| ++|.+||++|+|||+.||++||+++|.+.
T Consensus 3 s~~~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~r~~~~l~~~ 57 (60)
T 1x41_A 3 SGSSGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKYFSGP 57 (60)
T ss_dssp CCCCCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHHHHHTTCS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhCCCCHHHHHHHHHHHccCC
Confidence 4678999999999999999999999 79999999999999999999999988754
No 30
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=99.60 E-value=3.3e-16 Score=107.37 Aligned_cols=50 Identities=32% Similarity=0.561 Sum_probs=46.6
Q ss_pred ccCCCCHHHHHHHHHHHHHhCCCCcccccccccC-ccchhhhhhhhhcccC
Q 042846 13 KKGAWSKEEDDKLRAYILKYGHWNWGELPKFAGL-SRCGKSCRLRWMNYLR 62 (243)
Q Consensus 13 kKg~WT~EED~~L~~~V~~~g~~nW~~Ia~~l~~-~Rt~kqcr~Rw~n~L~ 62 (243)
+||+||+|||++|+.+|.+||..+|..||+.++. +||+.||++||.++++
T Consensus 1 kr~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~k 51 (53)
T 1w0t_A 1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKK 51 (53)
T ss_dssp CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCCCHHHHHHHHHHHHc
Confidence 5899999999999999999998899999999875 6999999999999885
No 31
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.60 E-value=1.7e-16 Score=116.02 Aligned_cols=60 Identities=23% Similarity=0.405 Sum_probs=55.3
Q ss_pred CCCCccCCCCHHHHHHHHHHHHHhCC-----CCcccccccccCccchhhhhhhhhcccCCCCCCCC
Q 042846 9 ENGMKKGAWSKEEDDKLRAYILKYGH-----WNWGELPKFAGLSRCGKSCRLRWMNYLRPDIKHGN 69 (243)
Q Consensus 9 k~~lkKg~WT~EED~~L~~~V~~~g~-----~nW~~Ia~~l~~~Rt~kqcr~Rw~n~L~p~i~r~~ 69 (243)
+|++.+++||+|||++|+++|.+||. .+|..||++|+ +||++||+.||++||.+.++.+.
T Consensus 3 ~p~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~-~Rt~~qcr~r~~~~l~~~~k~g~ 67 (75)
T 2yum_A 3 SGSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELG-NRTAKQVASQVQKYFIKLTKAGI 67 (75)
T ss_dssp CCCCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHS-SSCHHHHHHHHHHHHGGGSTTCS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhcCC
Confidence 57899999999999999999999995 58999999999 99999999999999998777654
No 32
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=99.60 E-value=4e-16 Score=109.05 Aligned_cols=52 Identities=19% Similarity=0.417 Sum_probs=48.0
Q ss_pred CCCccCCCCHHHHHHHHHHHHHhCCCCcccccccccCccchhhhhhhhhccc
Q 042846 10 NGMKKGAWSKEEDDKLRAYILKYGHWNWGELPKFAGLSRCGKSCRLRWMNYL 61 (243)
Q Consensus 10 ~~lkKg~WT~EED~~L~~~V~~~g~~nW~~Ia~~l~~~Rt~kqcr~Rw~n~L 61 (243)
..+.+++||+|||++|+++|.+||..+|..||++|+.+||++|||+||.+++
T Consensus 5 ~p~~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~~ 56 (58)
T 2elk_A 5 SSGFDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTY 56 (58)
T ss_dssp CCSCCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHHc
Confidence 3467899999999999999999997799999999986799999999999876
No 33
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=99.60 E-value=1.1e-15 Score=109.07 Aligned_cols=53 Identities=30% Similarity=0.455 Sum_probs=48.0
Q ss_pred CCCCCCChHHHHHHHHHHHHhC-CchHHhhccCC--CCCHHHHHHHHHHhhccccC
Q 042846 65 IKHGNYTKEEEDTIIRLRQQHG-NKWSLIAAKLP--GRTDNEIKNYWHTHLKKRKN 117 (243)
Q Consensus 65 i~r~~WT~EED~~Ll~lv~~~G-~~Ws~Ia~~lp--gRT~~q~knrw~~~lkk~~~ 117 (243)
.++++||+|||++|+++|.+|| ++|++||+.++ |||+.||++||++++++.++
T Consensus 9 ~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k~glN 64 (64)
T 3sjm_A 9 TKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGMN 64 (64)
T ss_dssp -CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTTCC
T ss_pred CCCCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHHhccCCC
Confidence 4789999999999999999999 58999999865 99999999999999988653
No 34
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.59 E-value=1.1e-15 Score=111.74 Aligned_cols=59 Identities=19% Similarity=0.220 Sum_probs=54.7
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHhC------CchHHhhccCCCCCHHHHHHHHHHhhccccCCCC
Q 042846 62 RPDIKHGNYTKEEEDTIIRLRQQHG------NKWSLIAAKLPGRTDNEIKNYWHTHLKKRKNKDP 120 (243)
Q Consensus 62 ~p~i~r~~WT~EED~~Ll~lv~~~G------~~Ws~Ia~~lpgRT~~q~knrw~~~lkk~~~k~~ 120 (243)
+|.+++++||.|||++|+++|.+|| ++|..||.+|+|||+.||++||+.+|++..+.+.
T Consensus 3 ~p~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~~Rt~~qcr~r~~~~l~~~~k~g~ 67 (75)
T 2yum_A 3 SGSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASQVQKYFIKLTKAGI 67 (75)
T ss_dssp CCCCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHSSSCHHHHHHHHHHHHGGGSTTCS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCC
Confidence 5789999999999999999999999 7899999999999999999999999998776653
No 35
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.56 E-value=6.9e-16 Score=112.14 Aligned_cols=58 Identities=21% Similarity=0.405 Sum_probs=54.0
Q ss_pred CCCCCccCCCCHHHHHHHHHHHHHhCCCCcccccccccCccchhhhhhhhhcccCCCCCC
Q 042846 8 DENGMKKGAWSKEEDDKLRAYILKYGHWNWGELPKFAGLSRCGKSCRLRWMNYLRPDIKH 67 (243)
Q Consensus 8 ~k~~lkKg~WT~EED~~L~~~V~~~g~~nW~~Ia~~l~~~Rt~kqcr~Rw~n~L~p~i~r 67 (243)
..|.+++|+||+|||++|+++|.+||. +|..||++|+ +||+.||+.||.++|++.++.
T Consensus 3 ~~p~~~~~~WT~eEd~~l~~~~~~~G~-~W~~Ia~~~~-~Rt~~q~k~r~~~~l~~~~~~ 60 (72)
T 2cu7_A 3 SGSSGYSVKWTIEEKELFEQGLAKFGR-RWTKISKLIG-SRTVLQVKSYARQYFKNKVKC 60 (72)
T ss_dssp CCCSSCCCCCCHHHHHHHHHHHHHTCS-CHHHHHHHHS-SSCHHHHHHHHHHHHHHHSCS
T ss_pred CCCCcCCCCCCHHHHHHHHHHHHHHCc-CHHHHHHHcC-CCCHHHHHHHHHHHHHHHHhc
Confidence 467899999999999999999999999 9999999999 999999999999999876655
No 36
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=99.55 E-value=5.4e-15 Score=103.31 Aligned_cols=51 Identities=22% Similarity=0.297 Sum_probs=47.0
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHhC-CchHHhhccCC-CCCHHHHHHHHHHhh
Q 042846 62 RPDIKHGNYTKEEEDTIIRLRQQHG-NKWSLIAAKLP-GRTDNEIKNYWHTHL 112 (243)
Q Consensus 62 ~p~i~r~~WT~EED~~Ll~lv~~~G-~~Ws~Ia~~lp-gRT~~q~knrw~~~l 112 (243)
...+.+++||+|||++|+++|++|| ++|.+||++|+ |||+.||++||++++
T Consensus 4 ~~p~~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~~ 56 (58)
T 2elk_A 4 GSSGFDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTY 56 (58)
T ss_dssp CCCSCCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHHc
Confidence 3457789999999999999999999 89999999999 999999999998764
No 37
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=99.54 E-value=4.7e-15 Score=114.38 Aligned_cols=63 Identities=33% Similarity=0.672 Sum_probs=58.6
Q ss_pred CCCCCCCChHHHHHHHHHHHHhCC-chHHhhccCCCCCHHHHHHHHHHhhccccCCCCCCCCCc
Q 042846 64 DIKHGNYTKEEEDTIIRLRQQHGN-KWSLIAAKLPGRTDNEIKNYWHTHLKKRKNKDPASSSST 126 (243)
Q Consensus 64 ~i~r~~WT~EED~~Ll~lv~~~G~-~Ws~Ia~~lpgRT~~q~knrw~~~lkk~~~k~~~s~~~~ 126 (243)
.+++++||+|||++|+++|..||. +|..||..|||||+.||+.||.++|++.+++++|+.++.
T Consensus 1 ~l~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd 64 (105)
T 1gv2_A 1 ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEED 64 (105)
T ss_dssp CCCCSCCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTCCCCCCCCCCHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCcHHHHhhhhcCCCHHHHHHHHHhccCCcccccCCCHHHH
Confidence 368999999999999999999996 699999999999999999999999999999999987653
No 38
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=99.31 E-value=4.4e-16 Score=117.86 Aligned_cols=57 Identities=26% Similarity=0.394 Sum_probs=53.6
Q ss_pred ccCCCCCCCCCChHHHHHHHHHHHHhCCchHHhhccCCCCCHHHHHHHHHHhhcccc
Q 042846 60 YLRPDIKHGNYTKEEEDTIIRLRQQHGNKWSLIAAKLPGRTDNEIKNYWHTHLKKRK 116 (243)
Q Consensus 60 ~L~p~i~r~~WT~EED~~Ll~lv~~~G~~Ws~Ia~~lpgRT~~q~knrw~~~lkk~~ 116 (243)
.+.|.+++++||.|||++|+++|..||++|+.||..|+|||++||++||++++++..
T Consensus 9 ~~~p~~~~~~WT~eEd~~l~~~~~~~G~~W~~IA~~l~gRt~~q~k~r~~~~lrk~~ 65 (89)
T 2ltp_A 9 SGRENLYFQGWTEEEMGTAKKGLLEHGRNWSAIARMVGSKTVSQCKNFYFNYKKRQN 65 (89)
Confidence 567899999999999999999999999999999999999999999999999988653
No 39
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=99.54 E-value=5.6e-15 Score=117.94 Aligned_cols=65 Identities=26% Similarity=0.537 Sum_probs=60.9
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHhCCchHHhhccCCCCCHHHHHHHHHHhhccccCCCCCCCCCc
Q 042846 62 RPDIKHGNYTKEEEDTIIRLRQQHGNKWSLIAAKLPGRTDNEIKNYWHTHLKKRKNKDPASSSST 126 (243)
Q Consensus 62 ~p~i~r~~WT~EED~~Ll~lv~~~G~~Ws~Ia~~lpgRT~~q~knrw~~~lkk~~~k~~~s~~~~ 126 (243)
.+..++++||+|||++|+++|..||.+|..||..|+|||+.||+.||+++|++.+++++|+.++.
T Consensus 6 ~~~~kk~~WT~eED~~L~~~v~~~G~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd 70 (126)
T 3osg_A 6 LKAAKKQKFTPEEDEMLKRAVAQHGSDWKMIAATFPNRNARQCRDRWKNYLAPSISHTPWTAEED 70 (126)
T ss_dssp -CBCSSCCCCHHHHHHHHHHHHHHTTCHHHHHHTCTTCCHHHHHHHHHHHTSTTSCCSCCCHHHH
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHhhhcccccccccCCHHHH
Confidence 45788999999999999999999999999999999999999999999999999999999998664
No 40
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=99.49 E-value=1.1e-14 Score=116.93 Aligned_cols=84 Identities=24% Similarity=0.384 Sum_probs=62.5
Q ss_pred CCCCCCccCCCCHHHHHHHHHHHHHhCCCCcccccccccCccchhhhhhhhhcccCCCCCCCCCChHHHHHHHHHHHHhC
Q 042846 7 YDENGMKKGAWSKEEDDKLRAYILKYGHWNWGELPKFAGLSRCGKSCRLRWMNYLRPDIKHGNYTKEEEDTIIRLRQQHG 86 (243)
Q Consensus 7 ~~k~~lkKg~WT~EED~~L~~~V~~~g~~nW~~Ia~~l~~~Rt~kqcr~Rw~n~L~p~i~r~~WT~EED~~Ll~lv~~~G 86 (243)
+.+|++++|+||+|||++|+.+|..||. +|..||++|+ ||++.||+.||+++|++.+..+.|+.+- +......+
T Consensus 47 ~l~p~~~~~~Wt~eEd~~L~~~~~~~G~-~W~~Ia~~l~-gRt~~~~k~rw~~~l~~~~~~~~~~~~~----~~p~~~kk 120 (131)
T 3zqc_A 47 HLDPAVVKHAWTPEEDETIFRNYLKLGS-KWSVIAKLIP-GRTDNAIKNRWNSSISKRISTNSNHKEI----LLPDRSKK 120 (131)
T ss_dssp HTSTTCCCSCCCHHHHHHHHHHHHHSCS-CHHHHTTTST-TCCHHHHHHHHHHTTGGGCCCCTTSCCC----CCCCCC--
T ss_pred ccCccccCCCCCHHHHHHHHHHHHHHCc-CHHHHHHHcC-CCCHHHHHHHHHHHHHHHhhcCCCcccc----cCchhhhh
Confidence 4678999999999999999999999997 9999999998 9999999999999999999999887652 11112234
Q ss_pred CchHHhhccC
Q 042846 87 NKWSLIAAKL 96 (243)
Q Consensus 87 ~~Ws~Ia~~l 96 (243)
.+|+.|++.|
T Consensus 121 ~~~~~i~k~~ 130 (131)
T 3zqc_A 121 RKAADVPKKL 130 (131)
T ss_dssp ----------
T ss_pred hhhhhcchhc
Confidence 5577777665
No 41
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=99.49 E-value=1.6e-14 Score=105.66 Aligned_cols=60 Identities=18% Similarity=0.333 Sum_probs=47.7
Q ss_pred CCCCCCCCCCccCCCCHHHHHHHHHHHHHhCCCCcccccccccCccchhhhhhhhhcccCCCCC
Q 042846 3 RAPTYDENGMKKGAWSKEEDDKLRAYILKYGHWNWGELPKFAGLSRCGKSCRLRWMNYLRPDIK 66 (243)
Q Consensus 3 r~p~~~k~~lkKg~WT~EED~~L~~~V~~~g~~nW~~Ia~~l~~~Rt~kqcr~Rw~n~L~p~i~ 66 (243)
|.--+++|+++||+||+|||++|+++|.+||. .|..||+.| +||+.||+.||.. |....+
T Consensus 12 ~~~~~ldP~i~k~~wT~EED~~L~~l~~~~G~-kW~~IA~~l--gRt~~q~knRw~~-L~~~~~ 71 (73)
T 2llk_A 12 ENLYFQGDRNHVGKYTPEEIEKLKELRIKHGN-DWATIGAAL--GRSASSVKDRCRL-MKDTCN 71 (73)
T ss_dssp -------CCCCCCSSCHHHHHHHHHHHHHHSS-CHHHHHHHH--TSCHHHHHHHHHH-CSCCCS
T ss_pred ceeeecCCCCCCCCCCHHHHHHHHHHHHHHCC-CHHHHHHHh--CCCHHHHHHHHHH-HHHHcc
Confidence 34456789999999999999999999999998 699999998 6999999999985 444443
No 42
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=99.47 E-value=2.6e-14 Score=110.91 Aligned_cols=60 Identities=20% Similarity=0.378 Sum_probs=56.3
Q ss_pred CCCCChHHHHHHHHHHHHhCC-chHHhhccCCCCCHHHHHHHHHHhhccccCCCCCCCCCc
Q 042846 67 HGNYTKEEEDTIIRLRQQHGN-KWSLIAAKLPGRTDNEIKNYWHTHLKKRKNKDPASSSST 126 (243)
Q Consensus 67 r~~WT~EED~~Ll~lv~~~G~-~Ws~Ia~~lpgRT~~q~knrw~~~lkk~~~k~~~s~~~~ 126 (243)
+++||+|||++|+++|..||. +|..||..|||||+.||+.||.++|++.+++++|+.++.
T Consensus 1 K~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~p~i~~~~WT~eEd 61 (107)
T 2k9n_A 1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMITRNPRQCRERWNNYINPALRTDPWSPEED 61 (107)
T ss_dssp CCSSCHHHHHHHHHHHHHHCSSCHHHHHHHTTTSCHHHHHHHHHHHSSSCCTTCCCCHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHhhhcCCCCHHHHHHHHHHHHcccccccccCHHHH
Confidence 579999999999999999995 899999999999999999999999999999999987654
No 43
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.46 E-value=6.5e-14 Score=102.43 Aligned_cols=52 Identities=13% Similarity=0.222 Sum_probs=48.1
Q ss_pred CCCCCCCCChHHHHHHHHHHHHhC----CchHHhhccCCCCCHHHHHHHHHHhhcc
Q 042846 63 PDIKHGNYTKEEEDTIIRLRQQHG----NKWSLIAAKLPGRTDNEIKNYWHTHLKK 114 (243)
Q Consensus 63 p~i~r~~WT~EED~~Ll~lv~~~G----~~Ws~Ia~~lpgRT~~q~knrw~~~lkk 114 (243)
+.+.+++||.|||.+|++++..|| ++|.+||++|||||++||++||+.+++.
T Consensus 14 ~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vpGRT~~qcr~Ry~~L~~d 69 (73)
T 2cqr_A 14 ARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLLVSG 69 (73)
T ss_dssp TTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHHHHSS
T ss_pred cccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHc
Confidence 467889999999999999999999 6899999999999999999999988763
No 44
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=99.46 E-value=5.2e-14 Score=105.34 Aligned_cols=69 Identities=16% Similarity=0.284 Sum_probs=59.8
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCccccccc----ccCccchhhhhhhhhccc-----CCCCCCC-CCChHHHHHHHHHHHH
Q 042846 15 GAWSKEEDDKLRAYILKYGHWNWGELPKF----AGLSRCGKSCRLRWMNYL-----RPDIKHG-NYTKEEEDTIIRLRQQ 84 (243)
Q Consensus 15 g~WT~EED~~L~~~V~~~g~~nW~~Ia~~----l~~~Rt~kqcr~Rw~n~L-----~p~i~r~-~WT~EED~~Ll~lv~~ 84 (243)
++||+|||+.|+.+|.+||.++|..|++. ++ +||+.||++||.|+| .|.++++ +...+....++.++..
T Consensus 1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~-~RT~~~lKdrWrnllk~~~~~p~~~~~~~~p~~~~~rv~~~~a~ 79 (83)
T 2ckx_A 1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNAD-HRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDRVLAAHAY 79 (83)
T ss_dssp CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCT-TSCHHHHHHHHHHHHHHHHSCGGGCCSSCCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccC-CCCHHHHHHHHHHHHHhccCCcccccCCCCCHHHHHHHHHHHHH
Confidence 58999999999999999999999999985 66 899999999999998 6777765 5666777888887753
No 45
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=99.45 E-value=6.5e-14 Score=109.09 Aligned_cols=78 Identities=15% Similarity=0.194 Sum_probs=67.0
Q ss_pred CCCCccCCCCHHHHHHHHHHHHHhCCCCccccccccc---Cccchhhhhhhhhccc-----CCCCCCCCCChHHHHH-HH
Q 042846 9 ENGMKKGAWSKEEDDKLRAYILKYGHWNWGELPKFAG---LSRCGKSCRLRWMNYL-----RPDIKHGNYTKEEEDT-II 79 (243)
Q Consensus 9 k~~lkKg~WT~EED~~L~~~V~~~g~~nW~~Ia~~l~---~~Rt~kqcr~Rw~n~L-----~p~i~r~~WT~EED~~-Ll 79 (243)
....++++||+|||+.|+.+|.+||.++|..|++.++ .+||+.+|++||.+++ +|.++++.-+++|--. ++
T Consensus 8 ~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~~~~~p~~~rg~~~P~~~l~rv~ 87 (105)
T 2aje_A 8 PQRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTAKISPQQRRGEPVPQELLNRVL 87 (105)
T ss_dssp -CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHTTTCCTTTTTCCSCCCHHHHHHH
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhccCCcccccCCCCCHHHHHHHH
Confidence 4678899999999999999999999999999999652 3899999999999999 6999999888777654 77
Q ss_pred HHHHHhC
Q 042846 80 RLRQQHG 86 (243)
Q Consensus 80 ~lv~~~G 86 (243)
+++..+|
T Consensus 88 ~~~~~~~ 94 (105)
T 2aje_A 88 NAHGYWT 94 (105)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7776655
No 46
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=99.45 E-value=5.5e-14 Score=104.22 Aligned_cols=54 Identities=19% Similarity=0.404 Sum_probs=49.3
Q ss_pred CCCCCCCccCCCCHHHHHHHHHHHHHhCCCCcccccccccCccchhhhhhhhhccc
Q 042846 6 TYDENGMKKGAWSKEEDDKLRAYILKYGHWNWGELPKFAGLSRCGKSCRLRWMNYL 61 (243)
Q Consensus 6 ~~~k~~lkKg~WT~EED~~L~~~V~~~g~~nW~~Ia~~l~~~Rt~kqcr~Rw~n~L 61 (243)
.+.+....+++||+|||++|+++|.+|| .+|..||++|+ +||+.||+.||.++.
T Consensus 10 ~~~~~~~~~~~WT~eEd~~Ll~~v~~~G-~~W~~IA~~v~-~RT~~qcr~r~~~~~ 63 (79)
T 2yus_A 10 AKSKGASAGREWTEQETLLLLEALEMYK-DDWNKVSEHVG-SRTQDECILHFLRLP 63 (79)
T ss_dssp CCCCSSCCSCCCCHHHHHHHHHHHHHSS-SCHHHHHHHHS-SCCHHHHHHHHTTSC
T ss_pred CCccccccCCCcCHHHHHHHHHHHHHhC-CCHHHHHHHcC-CCCHHHHHHHHHHhc
Confidence 3456777899999999999999999999 59999999999 999999999999983
No 47
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.39 E-value=5.3e-13 Score=94.34 Aligned_cols=51 Identities=22% Similarity=0.372 Sum_probs=47.2
Q ss_pred CCCCCCChHHHHHHHHHHHHhCCchHHhh---ccCCCCCHHHHHHHHHHhhccc
Q 042846 65 IKHGNYTKEEEDTIIRLRQQHGNKWSLIA---AKLPGRTDNEIKNYWHTHLKKR 115 (243)
Q Consensus 65 i~r~~WT~EED~~Ll~lv~~~G~~Ws~Ia---~~lpgRT~~q~knrw~~~lkk~ 115 (243)
-++.+||+|||+.|++.|++||.+|++|+ .+++|||+.+||+||++++++.
T Consensus 6 ~~r~~WT~EE~~~L~~gV~k~G~~W~~I~~~y~f~~~RT~VdLKdk~r~L~k~~ 59 (62)
T 1x58_A 6 SGRKDFTKEEVNYLFHGVKTMGNHWNSILWSFPFQKGRRAVDLAHKYHRLISGP 59 (62)
T ss_dssp CCSSSCCHHHHHHHHHHHHHHCSCHHHHHHHSCCCTTCCHHHHHHHHHHHHTCS
T ss_pred CCCCCCCHHHHHHHHHHHHHHhHhHHHHHHhCCCccCcccchHHHHHHHHHhcc
Confidence 46889999999999999999999999999 5789999999999999988753
No 48
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=99.09 E-value=3e-14 Score=107.76 Aligned_cols=55 Identities=22% Similarity=0.529 Sum_probs=51.5
Q ss_pred CCCCCCccCCCCHHHHHHHHHHHHHhCCCCcccccccccCccchhhhhhhhhcccCC
Q 042846 7 YDENGMKKGAWSKEEDDKLRAYILKYGHWNWGELPKFAGLSRCGKSCRLRWMNYLRP 63 (243)
Q Consensus 7 ~~k~~lkKg~WT~EED~~L~~~V~~~g~~nW~~Ia~~l~~~Rt~kqcr~Rw~n~L~p 63 (243)
...+++.+|+||+|||++|+.+|..||. +|..||++|+ |||+.||+.||.++|+.
T Consensus 9 ~~~p~~~~~~WT~eEd~~l~~~~~~~G~-~W~~IA~~l~-gRt~~q~k~r~~~~lrk 63 (89)
T 2ltp_A 9 SGRENLYFQGWTEEEMGTAKKGLLEHGR-NWSAIARMVG-SKTVSQCKNFYFNYKKR 63 (89)
Confidence 4568899999999999999999999999 8999999999 99999999999999863
No 49
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=99.38 E-value=2.2e-13 Score=100.93 Aligned_cols=48 Identities=13% Similarity=0.210 Sum_probs=45.0
Q ss_pred CCCCCCCChHHHHHHHHHHHHhCCchHHhhccCCCCCHHHHHHHHHHh
Q 042846 64 DIKHGNYTKEEEDTIIRLRQQHGNKWSLIAAKLPGRTDNEIKNYWHTH 111 (243)
Q Consensus 64 ~i~r~~WT~EED~~Ll~lv~~~G~~Ws~Ia~~lpgRT~~q~knrw~~~ 111 (243)
...+++||.|||++|+++|++||++|.+||++++|||+.||++||..+
T Consensus 15 ~~~~~~WT~eEd~~Ll~~v~~~G~~W~~IA~~v~~RT~~qcr~r~~~~ 62 (79)
T 2yus_A 15 ASAGREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLRL 62 (79)
T ss_dssp SCCSCCCCHHHHHHHHHHHHHSSSCHHHHHHHHSSCCHHHHHHHHTTS
T ss_pred cccCCCcCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHh
Confidence 456789999999999999999999999999999999999999999755
No 50
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.37 E-value=1.8e-13 Score=100.07 Aligned_cols=55 Identities=13% Similarity=0.363 Sum_probs=50.0
Q ss_pred CCCCCCccCCCCHHHHHHHHHHHHHhCC---CCcccccccccCccchhhhhhhhhcccC
Q 042846 7 YDENGMKKGAWSKEEDDKLRAYILKYGH---WNWGELPKFAGLSRCGKSCRLRWMNYLR 62 (243)
Q Consensus 7 ~~k~~lkKg~WT~EED~~L~~~V~~~g~---~nW~~Ia~~l~~~Rt~kqcr~Rw~n~L~ 62 (243)
-+++...+++||++||++|+.+|..||. .+|.+||++|| |||++||+.||.+++.
T Consensus 11 ~~~~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vp-GRT~~qcr~Ry~~L~~ 68 (73)
T 2cqr_A 11 KERARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVP-SKSKEDCIARYKLLVS 68 (73)
T ss_dssp CCTTTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCS-SSCHHHHHHHHHHHHS
T ss_pred ccccccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 4667789999999999999999999993 48999999999 9999999999998775
No 51
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=99.36 E-value=5.2e-13 Score=117.05 Aligned_cols=60 Identities=22% Similarity=0.397 Sum_probs=51.6
Q ss_pred CCCCCCCCChHHHHHHHHHHHHhCCc------hHHhhccCCCCCHHHHHHHHHHhhccccCCCCCCC
Q 042846 63 PDIKHGNYTKEEEDTIIRLRQQHGNK------WSLIAAKLPGRTDNEIKNYWHTHLKKRKNKDPASS 123 (243)
Q Consensus 63 p~i~r~~WT~EED~~Ll~lv~~~G~~------Ws~Ia~~lpgRT~~q~knrw~~~lkk~~~k~~~s~ 123 (243)
+.+++++||+|||++|+++|+++|++ |.+||++|||||++|||+||+++|++++... ++.
T Consensus 4 ~~~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~LpGRT~nsIRnRw~~~L~~~ln~v-y~~ 69 (246)
T 1ign_A 4 PSHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRLEYV-YEV 69 (246)
T ss_dssp ----CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTTGGGCCCE-ECB
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcCCCCHHHHHHHHHHHHhhhcccc-ccc
Confidence 46788999999999999999999986 9999999999999999999999999998743 443
No 52
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=99.36 E-value=8e-13 Score=105.30 Aligned_cols=54 Identities=17% Similarity=0.382 Sum_probs=50.0
Q ss_pred cCCCCCCCCCChHHHHHHHHHHHHhCC-chHHhhcc----CCCCCHHHHHHHHHHhhcc
Q 042846 61 LRPDIKHGNYTKEEEDTIIRLRQQHGN-KWSLIAAK----LPGRTDNEIKNYWHTHLKK 114 (243)
Q Consensus 61 L~p~i~r~~WT~EED~~Ll~lv~~~G~-~Ws~Ia~~----lpgRT~~q~knrw~~~lkk 114 (243)
+.+..++++||.|||+.|+++|++||. +|+.|++. |+|||+++||+||+++++.
T Consensus 11 ~~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~ 69 (121)
T 2juh_A 11 LSQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHT 69 (121)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHH
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHHHHHHhh
Confidence 566788999999999999999999997 99999997 5899999999999999983
No 53
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=99.35 E-value=7.5e-13 Score=99.02 Aligned_cols=48 Identities=17% Similarity=0.429 Sum_probs=44.6
Q ss_pred CCCChHHHHHHHHHHHHhCC-chHHhhcc----CCCCCHHHHHHHHHHhhccc
Q 042846 68 GNYTKEEEDTIIRLRQQHGN-KWSLIAAK----LPGRTDNEIKNYWHTHLKKR 115 (243)
Q Consensus 68 ~~WT~EED~~Ll~lv~~~G~-~Ws~Ia~~----lpgRT~~q~knrw~~~lkk~ 115 (243)
.+||.|||+.|+++|++||. +|+.|++. |+|||+++||+||+++++..
T Consensus 1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~RT~~~lKdrWrnllk~~ 53 (83)
T 2ckx_A 1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTA 53 (83)
T ss_dssp CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCCCCHHHHHHHHHHHHHhc
Confidence 47999999999999999997 99999995 89999999999999999754
No 54
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=99.33 E-value=2.6e-12 Score=100.00 Aligned_cols=55 Identities=16% Similarity=0.334 Sum_probs=49.1
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHhCC-chHHhhccC----CCCCHHHHHHHHHHhhcccc
Q 042846 62 RPDIKHGNYTKEEEDTIIRLRQQHGN-KWSLIAAKL----PGRTDNEIKNYWHTHLKKRK 116 (243)
Q Consensus 62 ~p~i~r~~WT~EED~~Ll~lv~~~G~-~Ws~Ia~~l----pgRT~~q~knrw~~~lkk~~ 116 (243)
.+..++++||.|||+.|+++|++||. +|+.|++.+ +|||+++||+||+++++...
T Consensus 8 ~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~~~ 67 (105)
T 2aje_A 8 PQRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTAK 67 (105)
T ss_dssp -CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHTTT
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhcc
Confidence 34678899999999999999999996 999999965 89999999999999997543
No 55
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=99.29 E-value=3.1e-12 Score=102.02 Aligned_cols=53 Identities=17% Similarity=0.359 Sum_probs=47.7
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHhCC-chHHhhcc----CCCCCHHHHHHHHHHhhcc
Q 042846 62 RPDIKHGNYTKEEEDTIIRLRQQHGN-KWSLIAAK----LPGRTDNEIKNYWHTHLKK 114 (243)
Q Consensus 62 ~p~i~r~~WT~EED~~Ll~lv~~~G~-~Ws~Ia~~----lpgRT~~q~knrw~~~lkk 114 (243)
....++++||.|||+.|+++|++||. +|+.|++. |+|||+.+||+||+++++.
T Consensus 26 ~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~ 83 (122)
T 2roh_A 26 GQRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHT 83 (122)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhh
Confidence 34567899999999999999999996 99999986 4899999999999999964
No 56
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=99.24 E-value=6.4e-12 Score=95.85 Aligned_cols=50 Identities=18% Similarity=0.356 Sum_probs=45.6
Q ss_pred CCCCCChHHHHHHHHHHHHhC----CchHHhhccCCCCCHHHHHHHHHHhhccc
Q 042846 66 KHGNYTKEEEDTIIRLRQQHG----NKWSLIAAKLPGRTDNEIKNYWHTHLKKR 115 (243)
Q Consensus 66 ~r~~WT~EED~~Ll~lv~~~G----~~Ws~Ia~~lpgRT~~q~knrw~~~lkk~ 115 (243)
.+++||.|||++|++++..|| ++|.+||+.|||||++||++||+.++...
T Consensus 7 ~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vpGRT~~q~k~ry~~l~~dv 60 (93)
T 2cjj_A 7 SGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDI 60 (93)
T ss_dssp -CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 467999999999999999996 78999999999999999999999988654
No 57
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=99.09 E-value=2.7e-11 Score=92.33 Aligned_cols=49 Identities=12% Similarity=0.297 Sum_probs=43.5
Q ss_pred CccCCCCHHHHHHHHHHHHHhC---CCCcccccccccCccchhhhhhhhhccc
Q 042846 12 MKKGAWSKEEDDKLRAYILKYG---HWNWGELPKFAGLSRCGKSCRLRWMNYL 61 (243)
Q Consensus 12 lkKg~WT~EED~~L~~~V~~~g---~~nW~~Ia~~l~~~Rt~kqcr~Rw~n~L 61 (243)
..+++||+|||++|+.++..|| ..+|..||+.|| |||.+||+.||.+++
T Consensus 6 ~~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vp-GRT~~q~k~ry~~l~ 57 (93)
T 2cjj_A 6 GSGRPWSAKENKAFERALAVYDKDTPDRWANVARAVE-GRTPEEVKKHYEILV 57 (93)
T ss_dssp --CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHST-TCCHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence 3478999999999999999997 347999999999 999999999999865
No 58
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.03 E-value=4.5e-10 Score=78.92 Aligned_cols=48 Identities=21% Similarity=0.214 Sum_probs=44.2
Q ss_pred CCCCCChHHHHHHHHHHHHhCCchHHhhccCCCCCHHHHHHHHHHhhc
Q 042846 66 KHGNYTKEEEDTIIRLRQQHGNKWSLIAAKLPGRTDNEIKNYWHTHLK 113 (243)
Q Consensus 66 ~r~~WT~EED~~Ll~lv~~~G~~Ws~Ia~~lpgRT~~q~knrw~~~lk 113 (243)
..++||+||++++++++..||++|..||..|||||..||..+|....+
T Consensus 11 ~~~~WT~eE~~~F~~~~~~~gk~w~~Ia~~l~~rt~~~~v~~Yy~~Kk 58 (61)
T 2eqr_A 11 FMNVWTDHEKEIFKDKFIQHPKNFGLIASYLERKSVPDCVLYYYLTKK 58 (61)
T ss_dssp CCCSCCHHHHHHHHHHHHHSTTCHHHHHHHCTTSCHHHHHHHHHHHTC
T ss_pred cCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHhcC
Confidence 457999999999999999999999999999999999999999976544
No 59
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=99.01 E-value=3e-10 Score=86.51 Aligned_cols=65 Identities=18% Similarity=0.285 Sum_probs=57.8
Q ss_pred hhhhhhhhcccCCCCCCCCCChHHHHHHHHHHHHhCCchHHhhccC-----CCCCHHHHHHHHHHhhccccCCC
Q 042846 51 KSCRLRWMNYLRPDIKHGNYTKEEEDTIIRLRQQHGNKWSLIAAKL-----PGRTDNEIKNYWHTHLKKRKNKD 119 (243)
Q Consensus 51 kqcr~Rw~n~L~p~i~r~~WT~EED~~Ll~lv~~~G~~Ws~Ia~~l-----pgRT~~q~knrw~~~lkk~~~k~ 119 (243)
.=+.++|.++|.+ ++||.||+..|++|+++||.+|..|+..+ ++||..+||+||..+.++.....
T Consensus 18 ~yt~eeY~~~L~~----~~WTkEETd~Lf~L~~~fdlRW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~~l~~~r 87 (93)
T 3hm5_A 18 VYSEQEYQLYLHD----DAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANVR 87 (93)
T ss_dssp CCCHHHHHHHTCB----TTBCHHHHHHHHHHHHHTTTCHHHHHHHSCTTTSCCCCHHHHHHHHHHHHHHHHHHT
T ss_pred ccCHHHHHHHcCC----CCCCHHHHHHHHHHHHHhCCCeeeehhhhccCCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 3468899999976 89999999999999999999999999998 58999999999999887665443
No 60
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=98.89 E-value=8.6e-10 Score=77.87 Aligned_cols=49 Identities=16% Similarity=0.304 Sum_probs=44.9
Q ss_pred CccCCCCHHHHHHHHHHHHHhCCCCccccc---ccccCccchhhhhhhhhcccC
Q 042846 12 MKKGAWSKEEDDKLRAYILKYGHWNWGELP---KFAGLSRCGKSCRLRWMNYLR 62 (243)
Q Consensus 12 lkKg~WT~EED~~L~~~V~~~g~~nW~~Ia---~~l~~~Rt~kqcr~Rw~n~L~ 62 (243)
-++.+||+|||+.|+++|++||. +|..|+ .++. +||.-.+++||++..+
T Consensus 6 ~~r~~WT~EE~~~L~~gV~k~G~-~W~~I~~~y~f~~-~RT~VdLKdk~r~L~k 57 (62)
T 1x58_A 6 SGRKDFTKEEVNYLFHGVKTMGN-HWNSILWSFPFQK-GRRAVDLAHKYHRLIS 57 (62)
T ss_dssp CCSSSCCHHHHHHHHHHHHHHCS-CHHHHHHHSCCCT-TCCHHHHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHHHHHHhH-hHHHHHHhCCCcc-CcccchHHHHHHHHHh
Confidence 47899999999999999999999 999999 5766 8999999999998765
No 61
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.88 E-value=1.8e-09 Score=78.58 Aligned_cols=51 Identities=18% Similarity=0.275 Sum_probs=46.0
Q ss_pred CCCCCCCChHHHHHHHHHHHHhC----CchHHhhccCCCCCHHHHHHHHHHhhccc
Q 042846 64 DIKHGNYTKEEEDTIIRLRQQHG----NKWSLIAAKLPGRTDNEIKNYWHTHLKKR 115 (243)
Q Consensus 64 ~i~r~~WT~EED~~Ll~lv~~~G----~~Ws~Ia~~lpgRT~~q~knrw~~~lkk~ 115 (243)
..+.+.||.||+++|.+++..|+ ++|.+||..+ |||..+|++||+.+++..
T Consensus 5 ~~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l-gRt~~eV~~~y~~L~~d~ 59 (72)
T 2cqq_A 5 SSGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQLKDSV 59 (72)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHHHHHHHSC
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh-CCCHHHHHHHHHHHHHhc
Confidence 45678999999999999999997 6899999998 999999999999887653
No 62
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.86 E-value=1.5e-09 Score=76.23 Aligned_cols=52 Identities=12% Similarity=0.301 Sum_probs=46.0
Q ss_pred CCCCCccCCCCHHHHHHHHHHHHHhCCCCcccccccccCccchhhhhhhhhccc
Q 042846 8 DENGMKKGAWSKEEDDKLRAYILKYGHWNWGELPKFAGLSRCGKSCRLRWMNYL 61 (243)
Q Consensus 8 ~k~~lkKg~WT~EED~~L~~~V~~~g~~nW~~Ia~~l~~~Rt~kqcr~Rw~n~L 61 (243)
++.....++||+||++++.+++..||. +|..||++|+ +|+..||+.+|....
T Consensus 6 ~~~r~~~~~WT~eE~~~F~~~~~~~gk-~w~~Ia~~l~-~rt~~~~v~~Yy~~K 57 (61)
T 2eqr_A 6 SGDRQFMNVWTDHEKEIFKDKFIQHPK-NFGLIASYLE-RKSVPDCVLYYYLTK 57 (61)
T ss_dssp CCCCSCCCSCCHHHHHHHHHHHHHSTT-CHHHHHHHCT-TSCHHHHHHHHHHHT
T ss_pred ccccccCCCCCHHHHHHHHHHHHHhCC-CHHHHHHHcC-CCCHHHHHHHHHHhc
Confidence 344456799999999999999999997 9999999999 999999999997654
No 63
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=98.76 E-value=8.5e-09 Score=89.73 Aligned_cols=49 Identities=14% Similarity=0.303 Sum_probs=45.4
Q ss_pred CCCCCChHHHHHHHHHHHHhCCchHHhhccCCCCCHHHHHHHHHHhhcc
Q 042846 66 KHGNYTKEEEDTIIRLRQQHGNKWSLIAAKLPGRTDNEIKNYWHTHLKK 114 (243)
Q Consensus 66 ~r~~WT~EED~~Ll~lv~~~G~~Ws~Ia~~lpgRT~~q~knrw~~~lkk 114 (243)
..++||.||+.++++++..||++|..||+.+++||.+|||++|+...++
T Consensus 132 ~s~~WTeEE~~lFleAl~kYGKDW~~IAk~VgTKT~~QcKnfY~~~kKR 180 (235)
T 2iw5_B 132 CNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRR 180 (235)
T ss_dssp CCSSCCHHHHHHHHHHHHHHSSCHHHHHHHHSSCCHHHHHHHHHHTTTT
T ss_pred cCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 4579999999999999999999999999999999999999999876654
No 64
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.68 E-value=6.2e-09 Score=75.66 Aligned_cols=50 Identities=14% Similarity=0.273 Sum_probs=43.8
Q ss_pred CCccCCCCHHHHHHHHHHHHHhCC---CCcccccccccCccchhhhhhhhhcccC
Q 042846 11 GMKKGAWSKEEDDKLRAYILKYGH---WNWGELPKFAGLSRCGKSCRLRWMNYLR 62 (243)
Q Consensus 11 ~lkKg~WT~EED~~L~~~V~~~g~---~nW~~Ia~~l~~~Rt~kqcr~Rw~n~L~ 62 (243)
+..++.||.|||++|..++.+|+. ..|.+||+.+| |+..||+.||..++.
T Consensus 5 ~~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~lg--Rt~~eV~~~y~~L~~ 57 (72)
T 2cqq_A 5 SSGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHELG--RSVTDVTTKAKQLKD 57 (72)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHHT--SCHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHhC--CCHHHHHHHHHHHHH
Confidence 456789999999999999999983 46999999975 999999999987653
No 65
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.68 E-value=5.2e-08 Score=70.99 Aligned_cols=52 Identities=13% Similarity=0.206 Sum_probs=45.5
Q ss_pred CCCCCChHHHHHHHHHHHHhCC----chHHhhccCCCCCHHHHHHHHHHhhccccC
Q 042846 66 KHGNYTKEEEDTIIRLRQQHGN----KWSLIAAKLPGRTDNEIKNYWHTHLKKRKN 117 (243)
Q Consensus 66 ~r~~WT~EED~~Ll~lv~~~G~----~Ws~Ia~~lpgRT~~q~knrw~~~lkk~~~ 117 (243)
....||.+|+.+|.+++..|+. +|..||..+||||..+|+.||..+++.+-.
T Consensus 7 ~~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~gKT~eE~~~hY~~l~~~~~s 62 (73)
T 1wgx_A 7 GDKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMENPRGKGS 62 (73)
T ss_dssp SSSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHSSSSSCC
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcCCCCHHHHHHHHHHHHhcccc
Confidence 3568999999999999999984 699999999999999999999988665433
No 66
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=98.57 E-value=2e-08 Score=70.30 Aligned_cols=48 Identities=21% Similarity=0.359 Sum_probs=43.1
Q ss_pred cCCCCHHHHHHHHHHHHHh--------CCCCcccccc-cccCccchhhhhhhhhcccC
Q 042846 14 KGAWSKEEDDKLRAYILKY--------GHWNWGELPK-FAGLSRCGKSCRLRWMNYLR 62 (243)
Q Consensus 14 Kg~WT~EED~~L~~~V~~~--------g~~nW~~Ia~-~l~~~Rt~kqcr~Rw~n~L~ 62 (243)
|.+||+|||++|+.+|.+| |..-|..+++ .++ .+|-.+||+||.++|+
T Consensus 2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~-~HtwqSwRdRy~k~l~ 58 (59)
T 1fex_A 2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLT-QHSWQSLKDRYLKHLR 58 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSS-SCCSHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCC-CCCHHHHHHHHHHHcc
Confidence 6789999999999999999 4445999999 787 9999999999999885
No 67
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=98.55 E-value=4.4e-08 Score=93.64 Aligned_cols=43 Identities=16% Similarity=0.349 Sum_probs=41.1
Q ss_pred CCCChHHHHHHHHHHHHhCCchHHhhccCCCCCHHHHHHHHHH
Q 042846 68 GNYTKEEEDTIIRLRQQHGNKWSLIAAKLPGRTDNEIKNYWHT 110 (243)
Q Consensus 68 ~~WT~EED~~Ll~lv~~~G~~Ws~Ia~~lpgRT~~q~knrw~~ 110 (243)
..||.||-.++++++.+||.+|..||..++.||..|||++|..
T Consensus 381 ~~WT~eE~~~f~~al~~yGkdw~~IA~~VgTKT~~Qvk~fy~~ 423 (482)
T 2xag_B 381 ARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVN 423 (482)
T ss_dssp SCCCHHHHHHHHHHHHHHTTCHHHHHHHHSSCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCcCHHHHHHHhCCCCHHHHHHHHHH
Confidence 4899999999999999999999999999999999999999974
No 68
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.51 E-value=4.5e-08 Score=71.32 Aligned_cols=49 Identities=24% Similarity=0.468 Sum_probs=44.2
Q ss_pred cCCCCHHHHHHHHHHHHHhCC---CCcccccccccCccchhhhhhhhhcccCC
Q 042846 14 KGAWSKEEDDKLRAYILKYGH---WNWGELPKFAGLSRCGKSCRLRWMNYLRP 63 (243)
Q Consensus 14 Kg~WT~EED~~L~~~V~~~g~---~nW~~Ia~~l~~~Rt~kqcr~Rw~n~L~p 63 (243)
...||.+|+++|..++..|+. .+|..||+.+| +|+..+|+.||..++..
T Consensus 8 ~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~-gKT~eE~~~hY~~l~~~ 59 (73)
T 1wgx_A 8 DKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVG-SRSPEECQRKYMENPRG 59 (73)
T ss_dssp SSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTT-TSCHHHHHHHHHHSSSS
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcC-CCCHHHHHHHHHHHHhc
Confidence 468999999999999999975 47999999999 99999999999988653
No 69
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=98.44 E-value=1.1e-07 Score=82.64 Aligned_cols=51 Identities=22% Similarity=0.354 Sum_probs=46.8
Q ss_pred CCCccCCCCHHHHHHHHHHHHHhCCCCcccccccccCccchhhhhhhhhcccC
Q 042846 10 NGMKKGAWSKEEDDKLRAYILKYGHWNWGELPKFAGLSRCGKSCRLRWMNYLR 62 (243)
Q Consensus 10 ~~lkKg~WT~EED~~L~~~V~~~g~~nW~~Ia~~l~~~Rt~kqcr~Rw~n~L~ 62 (243)
.....++||+||++++++++.+||. +|..||+.+| +||..||+.+|.++.+
T Consensus 129 ~~k~s~~WTeEE~~lFleAl~kYGK-DW~~IAk~Vg-TKT~~QcKnfY~~~kK 179 (235)
T 2iw5_B 129 IQKCNARWTTEEQLLAVQAIRKYGR-DFQAISDVIG-NKSVVQVKNFFVNYRR 179 (235)
T ss_dssp CCCCCSSCCHHHHHHHHHHHHHHSS-CHHHHHHHHS-SCCHHHHHHHHHHTTT
T ss_pred CCccCCCCCHHHHHHHHHHHHHHCc-CHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 3356789999999999999999998 9999999999 9999999999998875
No 70
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=98.42 E-value=2.8e-07 Score=64.36 Aligned_cols=47 Identities=19% Similarity=0.452 Sum_probs=42.5
Q ss_pred CCCCChHHHHHHHHHHHHh--------CCc-hHHhhc-cCCCCCHHHHHHHHHHhhc
Q 042846 67 HGNYTKEEEDTIIRLRQQH--------GNK-WSLIAA-KLPGRTDNEIKNYWHTHLK 113 (243)
Q Consensus 67 r~~WT~EED~~Ll~lv~~~--------G~~-Ws~Ia~-~lpgRT~~q~knrw~~~lk 113 (243)
|.+||.|||.+|++.|.++ |+. |.+|+. .+|++|-.++|+||...|+
T Consensus 2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~~HtwqSwRdRy~k~l~ 58 (59)
T 1fex_A 2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHLR 58 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCCCCCHHHHHHHHHHHcc
Confidence 5689999999999999999 544 999999 8999999999999988764
No 71
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=98.33 E-value=4.2e-07 Score=68.51 Aligned_cols=50 Identities=20% Similarity=0.373 Sum_probs=45.4
Q ss_pred CCCChHHHHHHHHHHHHhCC---chHHhhccCCCCCHHHHHHHHHHhhccccC
Q 042846 68 GNYTKEEEDTIIRLRQQHGN---KWSLIAAKLPGRTDNEIKNYWHTHLKKRKN 117 (243)
Q Consensus 68 ~~WT~EED~~Ll~lv~~~G~---~Ws~Ia~~lpgRT~~q~knrw~~~lkk~~~ 117 (243)
--||.|||..||...++-|. .|+.||+.|.+|+++||++||+.+++--.+
T Consensus 34 vlWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~Nks~nqV~~RFq~Lm~Lf~~ 86 (95)
T 1ug2_A 34 VLWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRELMQLFHT 86 (95)
T ss_dssp SSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHHHHHHHH
T ss_pred EEeccccCHHHHHHHHhcCCChhHHHHHHHHHccCCHHHHHHHHHHHHHHHHH
Confidence 36999999999999999996 799999999999999999999999875543
No 72
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=97.57 E-value=1.3e-07 Score=67.70 Aligned_cols=46 Identities=22% Similarity=0.407 Sum_probs=42.7
Q ss_pred CCChHHHHHHHHHHHHhCC---chHHhhccCCCCCHHHHHHHHHHhhccc
Q 042846 69 NYTKEEEDTIIRLRQQHGN---KWSLIAAKLPGRTDNEIKNYWHTHLKKR 115 (243)
Q Consensus 69 ~WT~EED~~Ll~lv~~~G~---~Ws~Ia~~lpgRT~~q~knrw~~~lkk~ 115 (243)
-||.|||..|+..+++-|. .|+.||..| |||++||++||+.+++--
T Consensus 16 lWTReeDR~IL~~cq~~G~s~~tfa~iA~~L-nks~~QV~~RF~~Lm~Lf 64 (70)
T 2lr8_A 16 LWTRNDDRVILLECQKRGPSSKTFAYLAAKL-DKNPNQVSERFQQLMKLF 64 (70)
Confidence 6999999999999999997 799999999 999999999999888643
No 73
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.24 E-value=3.8e-06 Score=59.16 Aligned_cols=49 Identities=16% Similarity=0.261 Sum_probs=45.2
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHhCCchHHhhc-cCCCCCHHHHHHHHHH
Q 042846 62 RPDIKHGNYTKEEEDTIIRLRQQHGNKWSLIAA-KLPGRTDNEIKNYWHT 110 (243)
Q Consensus 62 ~p~i~r~~WT~EED~~Ll~lv~~~G~~Ws~Ia~-~lpgRT~~q~knrw~~ 110 (243)
.|.+....||+||-.+..+++..||.+|..|++ .|++||..+|...|..
T Consensus 4 ~p~~~~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY~ 53 (63)
T 2yqk_A 4 GSSGIEKCWTEDEVKRFVKGLRQYGKNFFRIRKELLPNKETGELITFYYY 53 (63)
T ss_dssp CCCCCCCSCCHHHHHHHHHHHHHTCSCHHHHHHHSCTTSCHHHHHHHHHH
T ss_pred CCCcCCCCcCHHHHHHHHHHHHHhCccHHHHHHHHcCCCcHHHHHHHHhc
Confidence 467888999999999999999999999999999 6999999999988864
No 74
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=98.15 E-value=6.4e-06 Score=74.70 Aligned_cols=99 Identities=19% Similarity=0.225 Sum_probs=80.4
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCcccccccccCccchhhhhh-------hhhcc---------------------------
Q 042846 15 GAWSKEEDDKLRAYILKYGHWNWGELPKFAGLSRCGKSCRL-------RWMNY--------------------------- 60 (243)
Q Consensus 15 g~WT~EED~~L~~~V~~~g~~nW~~Ia~~l~~~Rt~kqcr~-------Rw~n~--------------------------- 60 (243)
+.||..+...++.++.+||..+|..||..++ +++...++. ||..+
T Consensus 111 ~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~-~Kt~eEV~~Y~~vFw~ry~ei~d~ek~~~~IE~gE~ki~r~~~~~~~l 189 (304)
T 1ofc_X 111 TAWTKRDFNQFIKANEKYGRDDIDNIAKDVE-GKTPEEVIEYNAVFWERCTELQDIERIMGQIERGEGKIQRRLSIKKAL 189 (304)
T ss_dssp TTCCHHHHHHHHHHHHHHCTTCHHHHTTSST-TCCHHHHHHHHHHHHHHGGGCTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHhCHHHHHHHHHHhc-CCCHHHHHHHHHHHHHhHHHhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4699999999999999999999999999998 899887754 22100
Q ss_pred ----------------cCCCCCCCCCChHHHHHHHHHHHHhCC----chHHhhc------------cCCCCCHHHHHHHH
Q 042846 61 ----------------LRPDIKHGNYTKEEEDTIIRLRQQHGN----KWSLIAA------------KLPGRTDNEIKNYW 108 (243)
Q Consensus 61 ----------------L~p~i~r~~WT~EED~~Ll~lv~~~G~----~Ws~Ia~------------~lpgRT~~q~knrw 108 (243)
.-+..+...||++||..|+-++.+||- .|..|.. ++..||+.+|..|.
T Consensus 190 ~~Ki~~~~~P~~~L~i~y~~~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwf~kSRTp~el~rRc 269 (304)
T 1ofc_X 190 DQKMSRYRAPFHQLRLQYGNNKGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRRC 269 (304)
T ss_dssp HHHHHTCSSHHHHCCCCCTTCCCSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHHH
T ss_pred HHHHHHhcCcHHHhccccCCCCCCccCHHHHHHHHHHHHHhcCCCcchHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHH
Confidence 012234578999999999999999994 6999962 34579999999999
Q ss_pred HHhhcc
Q 042846 109 HTHLKK 114 (243)
Q Consensus 109 ~~~lkk 114 (243)
+++++-
T Consensus 270 ~tLi~~ 275 (304)
T 1ofc_X 270 NTLITL 275 (304)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999874
No 75
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=98.06 E-value=1.2e-06 Score=63.58 Aligned_cols=44 Identities=9% Similarity=0.242 Sum_probs=39.2
Q ss_pred cCCCCHHHHHHHHHHHHHhCCC---CcccccccccCccchhhhhhhhh
Q 042846 14 KGAWSKEEDDKLRAYILKYGHW---NWGELPKFAGLSRCGKSCRLRWM 58 (243)
Q Consensus 14 Kg~WT~EED~~L~~~V~~~g~~---nW~~Ia~~l~~~Rt~kqcr~Rw~ 58 (243)
.+.||.+|+++|..++..|+.. .|.+||+.+| ||+..+|+.+|.
T Consensus 20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~Vp-GKT~eEVk~hY~ 66 (74)
T 4eef_G 20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVK-GRTPEEVKKHYE 66 (74)
T ss_dssp --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSC-SSCHHHHHGGGC
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcC-CCCHHHHHHHHH
Confidence 4689999999999999999753 7999999999 999999999985
No 76
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=98.05 E-value=1e-06 Score=63.97 Aligned_cols=43 Identities=19% Similarity=0.284 Sum_probs=38.6
Q ss_pred CCCCChHHHHHHHHHHHHhCC----chHHhhccCCCCCHHHHHHHHH
Q 042846 67 HGNYTKEEEDTIIRLRQQHGN----KWSLIAAKLPGRTDNEIKNYWH 109 (243)
Q Consensus 67 r~~WT~EED~~Ll~lv~~~G~----~Ws~Ia~~lpgRT~~q~knrw~ 109 (243)
...||.+|+++|..++..|+. +|.+||..+||||..+|+.+|.
T Consensus 20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~VpGKT~eEVk~hY~ 66 (74)
T 4eef_G 20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVKGRTPEEVKKHYE 66 (74)
T ss_dssp --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSCSSCHHHHHGGGC
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcCCCCHHHHHHHHH
Confidence 458999999999999999985 7999999999999999999884
No 77
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=97.96 E-value=7.5e-06 Score=62.09 Aligned_cols=60 Identities=20% Similarity=0.332 Sum_probs=50.6
Q ss_pred hhhhcccCCCCCCCCCChHHHHHHHHHHHHhCCchHHhhccCC-----CCCHHHHHHHHHHhhccccCC
Q 042846 55 LRWMNYLRPDIKHGNYTKEEEDTIIRLRQQHGNKWSLIAAKLP-----GRTDNEIKNYWHTHLKKRKNK 118 (243)
Q Consensus 55 ~Rw~n~L~p~i~r~~WT~EED~~Ll~lv~~~G~~Ws~Ia~~lp-----gRT~~q~knrw~~~lkk~~~k 118 (243)
+.|..+|. ...||.||...|++|+++|+-+|.-|+..+. +||-.++|.||..+.++-.+.
T Consensus 22 eEY~~~L~----~~~WT~eETd~LfdLc~~fdlRw~vI~DRy~~~~~~~RtvEdLK~RYY~V~~~l~~~ 86 (93)
T 4iej_A 22 QEYQLYLH----DDAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANV 86 (93)
T ss_dssp HHHHHHTC----BTTBCHHHHHHHHHHHHHTTTCHHHHHHHCCTTTSCCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhC----CCCCCHHHHHHHHHHHHHcCCCeEEEeeccccCCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 45666665 3689999999999999999999999998763 799999999999888775543
No 78
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.91 E-value=9.1e-06 Score=57.18 Aligned_cols=49 Identities=12% Similarity=0.215 Sum_probs=44.2
Q ss_pred CCCCccCCCCHHHHHHHHHHHHHhCCCCcccccc-cccCccchhhhhhhhhc
Q 042846 9 ENGMKKGAWSKEEDDKLRAYILKYGHWNWGELPK-FAGLSRCGKSCRLRWMN 59 (243)
Q Consensus 9 k~~lkKg~WT~EED~~L~~~V~~~g~~nW~~Ia~-~l~~~Rt~kqcr~Rw~n 59 (243)
.|.+....||+||-++..+++.+||. +|..|++ +++ +|+..||..-|..
T Consensus 4 ~p~~~~~~WT~eE~~~Fe~~l~~yGK-df~~I~~~~v~-~Kt~~~~v~fYY~ 53 (63)
T 2yqk_A 4 GSSGIEKCWTEDEVKRFVKGLRQYGK-NFFRIRKELLP-NKETGELITFYYY 53 (63)
T ss_dssp CCCCCCCSCCHHHHHHHHHHHHHTCS-CHHHHHHHSCT-TSCHHHHHHHHHH
T ss_pred CCCcCCCCcCHHHHHHHHHHHHHhCc-cHHHHHHHHcC-CCcHHHHHHHHhc
Confidence 36677889999999999999999999 9999998 688 9999999987754
No 79
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=97.74 E-value=1.6e-05 Score=76.09 Aligned_cols=51 Identities=22% Similarity=0.354 Sum_probs=45.7
Q ss_pred CCCccCCCCHHHHHHHHHHHHHhCCCCcccccccccCccchhhhhhhhhcccC
Q 042846 10 NGMKKGAWSKEEDDKLRAYILKYGHWNWGELPKFAGLSRCGKSCRLRWMNYLR 62 (243)
Q Consensus 10 ~~lkKg~WT~EED~~L~~~V~~~g~~nW~~Ia~~l~~~Rt~kqcr~Rw~n~L~ 62 (243)
......+||.||-+++++++.+||. +|..||+.+| +|+..||+..|.++-+
T Consensus 376 ~~~~~~~WT~eE~~~f~~al~~yGk-dw~~IA~~Vg-TKT~~Qvk~fy~~~kk 426 (482)
T 2xag_B 376 IQKCNARWTTEEQLLAVQAIRKYGR-DFQAISDVIG-NKSVVQVKNFFVNYRR 426 (482)
T ss_dssp CCCCCSCCCHHHHHHHHHHHHHHTT-CHHHHHHHHS-SCCHHHHHHHHHHTTT
T ss_pred ccccCCCCCHHHHHHHHHHHHHHCc-CHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 3345789999999999999999998 9999999999 9999999999986543
No 80
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=97.69 E-value=6.1e-05 Score=57.07 Aligned_cols=44 Identities=25% Similarity=0.302 Sum_probs=41.1
Q ss_pred CCCCChHHHHHHHHHHHHhCCchHHhhccCCCCCHHHHHHHHHH
Q 042846 67 HGNYTKEEEDTIIRLRQQHGNKWSLIAAKLPGRTDNEIKNYWHT 110 (243)
Q Consensus 67 r~~WT~EED~~Ll~lv~~~G~~Ws~Ia~~lpgRT~~q~knrw~~ 110 (243)
...||+||.++..+++..||++|..||..||+||..+|-..|..
T Consensus 43 ~~~WT~eE~~~F~~~~~~~gK~F~~Ia~~l~~Kt~~~cV~~YY~ 86 (94)
T 4a69_C 43 MNMWSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLYYYL 86 (94)
T ss_dssp TCCCCHHHHHHHHHHHHHSTTCHHHHHHTCTTCCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCCHHHHHHHcCCCCHHHHHHHHhc
Confidence 35899999999999999999999999999999999999998863
No 81
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=97.69 E-value=9.3e-05 Score=53.07 Aligned_cols=44 Identities=16% Similarity=0.212 Sum_probs=40.9
Q ss_pred CCCCCChHHHHHHHHHHHHhCCchHHhhc-cCCCCCHHHHHHHHH
Q 042846 66 KHGNYTKEEEDTIIRLRQQHGNKWSLIAA-KLPGRTDNEIKNYWH 109 (243)
Q Consensus 66 ~r~~WT~EED~~Ll~lv~~~G~~Ws~Ia~-~lpgRT~~q~knrw~ 109 (243)
....||+||-.+..+++..||.+|..|++ .|++||..+|...|.
T Consensus 7 ~~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY 51 (70)
T 2crg_A 7 GMEEWSASEACLFEEALEKYGKDFNDIRQDFLPWKSLTSIIEYYY 51 (70)
T ss_dssp SSCCCCHHHHHHHHHHHHHTCSCHHHHHHTTCSSSCHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhCccHHHHHHHHcCCCCHHHHHHHHH
Confidence 34689999999999999999999999999 599999999999887
No 82
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=97.42 E-value=8e-05 Score=56.48 Aligned_cols=50 Identities=16% Similarity=0.261 Sum_probs=43.3
Q ss_pred CccCCCCHHHHHHHHHHHHHhCCCCccccccccc----CccchhhhhhhhhcccC
Q 042846 12 MKKGAWSKEEDDKLRAYILKYGHWNWGELPKFAG----LSRCGKSCRLRWMNYLR 62 (243)
Q Consensus 12 lkKg~WT~EED~~L~~~V~~~g~~nW~~Ia~~l~----~~Rt~kqcr~Rw~n~L~ 62 (243)
+.-++||.||+..|++++++|+. .|..|+.... .+|+..++++||..+.+
T Consensus 28 L~~~~WTkEETd~Lf~L~~~fdl-RW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~ 81 (93)
T 3hm5_A 28 LHDDAWTKAETDHLFDLSRRFDL-RFVVIHDRYDHQQFKKRSVEDLKERYYHICA 81 (93)
T ss_dssp TCBTTBCHHHHHHHHHHHHHTTT-CHHHHHHHSCTTTSCCCCHHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHHHhCC-CeeeehhhhccCCCCCCCHHHHHHHHHHHHH
Confidence 34489999999999999999998 9999998772 27999999999987653
No 83
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=97.36 E-value=0.00013 Score=52.39 Aligned_cols=45 Identities=18% Similarity=0.274 Sum_probs=40.7
Q ss_pred ccCCCCHHHHHHHHHHHHHhCCCCcccccc-cccCccchhhhhhhhhc
Q 042846 13 KKGAWSKEEDDKLRAYILKYGHWNWGELPK-FAGLSRCGKSCRLRWMN 59 (243)
Q Consensus 13 kKg~WT~EED~~L~~~V~~~g~~nW~~Ia~-~l~~~Rt~kqcr~Rw~n 59 (243)
....||+||-.+...++..||. +|..|++ +++ +|+..+|..-|..
T Consensus 7 ~~~~WT~eE~~~Fe~~l~~yGK-df~~I~~~~v~-~Kt~~~~v~fYY~ 52 (70)
T 2crg_A 7 GMEEWSASEACLFEEALEKYGK-DFNDIRQDFLP-WKSLTSIIEYYYM 52 (70)
T ss_dssp SSCCCCHHHHHHHHHHHHHTCS-CHHHHHHTTCS-SSCHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhCc-cHHHHHHHHcC-CCCHHHHHHHHHh
Confidence 3468999999999999999999 9999999 688 9999999987764
No 84
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=97.34 E-value=0.00013 Score=55.27 Aligned_cols=44 Identities=20% Similarity=0.468 Sum_probs=40.5
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCCcccccccccCccchhhhhhhhhc
Q 042846 14 KGAWSKEEDDKLRAYILKYGHWNWGELPKFAGLSRCGKSCRLRWMN 59 (243)
Q Consensus 14 Kg~WT~EED~~L~~~V~~~g~~nW~~Ia~~l~~~Rt~kqcr~Rw~n 59 (243)
...||+||.+++.+++..||. +|..|++.|+ +|+..+|.+-|..
T Consensus 43 ~~~WT~eE~~~F~~~~~~~gK-~F~~Ia~~l~-~Kt~~~cV~~YY~ 86 (94)
T 4a69_C 43 MNMWSEQEKETFREKFMQHPK-NFGLIASFLE-RKTVAECVLYYYL 86 (94)
T ss_dssp TCCCCHHHHHHHHHHHHHSTT-CHHHHHHTCT-TCCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCC-CHHHHHHHcC-CCCHHHHHHHHhc
Confidence 467999999999999999998 9999999999 9999999987753
No 85
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=97.29 E-value=0.00027 Score=52.11 Aligned_cols=52 Identities=21% Similarity=0.466 Sum_probs=42.5
Q ss_pred CCCCChHHHHHHHHHHHHhCC----------chHHhhccCC----CCCHHHHHHHHHHhhccccCC
Q 042846 67 HGNYTKEEEDTIIRLRQQHGN----------KWSLIAAKLP----GRTDNEIKNYWHTHLKKRKNK 118 (243)
Q Consensus 67 r~~WT~EED~~Ll~lv~~~G~----------~Ws~Ia~~lp----gRT~~q~knrw~~~lkk~~~k 118 (243)
...||.+|-.+||+++..+.. .|..||..|. .||+.||+++|.++.+.-++.
T Consensus 4 ~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~k~Yk~~ 69 (86)
T 2ebi_A 4 AETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLLKEFKKA 69 (86)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCSC
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 468999999999999876321 4999999863 699999999999988865444
No 86
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=97.24 E-value=5e-05 Score=56.09 Aligned_cols=49 Identities=20% Similarity=0.504 Sum_probs=39.8
Q ss_pred ccCCCCHHHHHHHHHHHHHhCC---------CCcccccccc---cCccchhhhhhhhhccc
Q 042846 13 KKGAWSKEEDDKLRAYILKYGH---------WNWGELPKFA---GLSRCGKSCRLRWMNYL 61 (243)
Q Consensus 13 kKg~WT~EED~~L~~~V~~~g~---------~nW~~Ia~~l---~~~Rt~kqcr~Rw~n~L 61 (243)
+...||.+|-..|+++...... .-|..||..| |..|++.||+.+|.++.
T Consensus 3 R~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~ 63 (86)
T 2ebi_A 3 RAETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLL 63 (86)
T ss_dssp CSCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 5678999999999999976421 1499999865 46799999999998764
No 87
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=96.97 E-value=0.0025 Score=59.15 Aligned_cols=102 Identities=21% Similarity=0.277 Sum_probs=78.7
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCcccccccccCccchhhhhhhhhcc----------------------------------
Q 042846 15 GAWSKEEDDKLRAYILKYGHWNWGELPKFAGLSRCGKSCRLRWMNY---------------------------------- 60 (243)
Q Consensus 15 g~WT~EED~~L~~~V~~~g~~nW~~Ia~~l~~~Rt~kqcr~Rw~n~---------------------------------- 60 (243)
+.||.-+=..++.++.+||..+-..||..|+.+.+...++. |.+.
T Consensus 124 ~~WnrrDF~~FI~a~~kyGR~d~~~IA~ev~~~Kt~eEV~~-Y~~vFw~Ry~Ei~d~erii~~IEkgE~ki~r~~~~~~~ 202 (374)
T 2y9y_A 124 TNWNKLEFRKFITVSGKYGRNSIQAIARELAPGKTLEEVRA-YAKAFWSNIERIEDYEKYLKIIENEEEKIKRVKMQQEA 202 (374)
T ss_dssp CCSCHHHHHHHHHHHHHHCTTCHHHHHSSCCCSSSHHHHHH-HHHHHHHTCSSCSCCTTTHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHhCHhHHHHHHHHHccCCCHHHHHH-HHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46999999999999999999889999998854677777663 2211
Q ss_pred --------------c----CCC-CCCCCCChHHHHHHHHHHHHhC----CchHHhhcc------------CCCCCHHHHH
Q 042846 61 --------------L----RPD-IKHGNYTKEEEDTIIRLRQQHG----NKWSLIAAK------------LPGRTDNEIK 105 (243)
Q Consensus 61 --------------L----~p~-i~r~~WT~EED~~Ll~lv~~~G----~~Ws~Ia~~------------lpgRT~~q~k 105 (243)
| .+. .+...||.+||..||-++.+|| +.|..|-.. |..||+.+|.
T Consensus 203 L~~Ki~~y~~P~~~L~i~y~~~~~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwF~kSRT~~EL~ 282 (374)
T 2y9y_A 203 LRRKLSEYKNPFFDLKLKHPPSSNNKRTYSEEEDRFILLMLFKYGLDRDDVYELVRDEIRDCPLFELDFYFRSRTPVELA 282 (374)
T ss_dssp HHHHHTTCSSHHHHCCCSSCCCCSSCCCSCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHCSGGGSCHHHHTCCHHHHH
T ss_pred HHHHHHHccCCHHHceeccCCCCCCCCccCHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCcchhhhHHHhcCCHHHHH
Confidence 1 011 1456899999999999999999 469998332 3579999999
Q ss_pred HHHHHhhccccC
Q 042846 106 NYWHTHLKKRKN 117 (243)
Q Consensus 106 nrw~~~lkk~~~ 117 (243)
.|..++++--.+
T Consensus 283 rRc~tLi~~IeK 294 (374)
T 2y9y_A 283 RRGNTLLQCLEK 294 (374)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHH
Confidence 999999975433
No 88
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=96.86 E-value=0.00068 Score=51.02 Aligned_cols=47 Identities=15% Similarity=0.285 Sum_probs=41.6
Q ss_pred ccCCCCHHHHHHHHHHHHHhCC--CCcccccccccCccchhhhhhhhhcc
Q 042846 13 KKGAWSKEEDDKLRAYILKYGH--WNWGELPKFAGLSRCGKSCRLRWMNY 60 (243)
Q Consensus 13 kKg~WT~EED~~L~~~V~~~g~--~nW~~Ia~~l~~~Rt~kqcr~Rw~n~ 60 (243)
+--.||.|||..|+...++.|. ..|..||+.|+ +|+..|+++|++.+
T Consensus 32 ~VvlWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~-Nks~nqV~~RFq~L 80 (95)
T 1ug2_A 32 KVVLWTREADRVILTMCQEQGAQPHTFSVISQQLG-NKTPVEVSHRFREL 80 (95)
T ss_dssp CCSSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHS-SCCHHHHHHHHHHH
T ss_pred EEEEeccccCHHHHHHHHhcCCChhHHHHHHHHHc-cCCHHHHHHHHHHH
Confidence 3456999999999999999986 47999999999 89999999999863
No 89
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=95.67 E-value=0.0003 Score=50.28 Aligned_cols=52 Identities=13% Similarity=0.203 Sum_probs=43.6
Q ss_pred CCCCccCCCCHHHHHHHHHHHHHhCC--CCcccccccccCccchhhhhhhhhcccC
Q 042846 9 ENGMKKGAWSKEEDDKLRAYILKYGH--WNWGELPKFAGLSRCGKSCRLRWMNYLR 62 (243)
Q Consensus 9 k~~lkKg~WT~EED~~L~~~V~~~g~--~nW~~Ia~~l~~~Rt~kqcr~Rw~n~L~ 62 (243)
+.|-.--.||.|||..|+..+++-|. ..|..||+.| +|++.|+..||...++
T Consensus 9 ~~ge~vvlWTReeDR~IL~~cq~~G~s~~tfa~iA~~L--nks~~QV~~RF~~Lm~ 62 (70)
T 2lr8_A 9 KKGEIIILWTRNDDRVILLECQKRGPSSKTFAYLAAKL--DKNPNQVSERFQQLMK 62 (70)
Confidence 34444567999999999999999987 3699999988 4999999999987654
No 90
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=96.52 E-value=0.0033 Score=53.07 Aligned_cols=100 Identities=13% Similarity=0.183 Sum_probs=68.0
Q ss_pred ccCCCCHHHHHHHHHHHHHhC--CCCccccccc--ccCccchhhhhh-------hhhccc--------------------
Q 042846 13 KKGAWSKEEDDKLRAYILKYG--HWNWGELPKF--AGLSRCGKSCRL-------RWMNYL-------------------- 61 (243)
Q Consensus 13 kKg~WT~EED~~L~~~V~~~g--~~nW~~Ia~~--l~~~Rt~kqcr~-------Rw~n~L-------------------- 61 (243)
....||..|=..|+.++.+|| ...|..|++. +. +++...+.. +....+
T Consensus 6 ~~~~~t~~E~r~fira~~kfG~~~~r~~~I~~da~L~-~Ks~~~v~~y~~~f~~~c~~~~~~~~~~~~~~~~~~~~~~~~ 84 (211)
T 4b4c_A 6 NIKGFSDAEIRRFIKSYKKFGGPLERLDAIARDAELV-DKSETDLRRLGELVHNGCIKALKDSSSGTERTGGRLGKVKGP 84 (211)
T ss_dssp --CCSCHHHHHHHHHHHTTCSSGGGCHHHHHHHTTCT-TSCHHHHHHHHHHHHHHHHHHHC-----------------CC
T ss_pred cCCCCCHHHHHHHHHHHHHHCCchhHHHHHHHHhccC-CCCHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccch
Confidence 346899999999999999999 4679998753 33 455543332 000000
Q ss_pred --------------------------------------------CCCCCCCCCChHHHHHHHHHHHHhC-CchHHhhc--
Q 042846 62 --------------------------------------------RPDIKHGNYTKEEEDTIIRLRQQHG-NKWSLIAA-- 94 (243)
Q Consensus 62 --------------------------------------------~p~i~r~~WT~EED~~Ll~lv~~~G-~~Ws~Ia~-- 94 (243)
.+......||.+||..|+..+.+|| ++|.+|-.
T Consensus 85 ~~~~~~v~~nA~~il~R~~~l~~L~~~v~~~~~~~~~~~i~~~~~~~~~~~~W~~~~D~~LL~Gi~k~G~g~w~~Ir~D~ 164 (211)
T 4b4c_A 85 TFRISGVQVNAKLVISHEEELIPLHKSIPSDPEERKQYTIPCHTKAAHFDIDWGKEDDSNLLIGIYEYGYGSWEMIKMDP 164 (211)
T ss_dssp EEEETTEEEEHHHHHHHHHHHHHHHHHSCSSHHHHHTCCCCSCCCCCCSSSCCCHHHHHHHHHHHHHHCTTCHHHHHHCS
T ss_pred hhhhcccchhHHHHHHhHHHHHHHHHHHHhchhhHHHcCcCCCCCCCCCCCCccHHHHHHHHHHHHHHCcCcHHHHHhCh
Confidence 0111123699999999999999999 99999976
Q ss_pred cC--C--------C--CCHHHHHHHHHHhhc
Q 042846 95 KL--P--------G--RTDNEIKNYWHTHLK 113 (243)
Q Consensus 95 ~l--p--------g--RT~~q~knrw~~~lk 113 (243)
.| . . +++.++..|-..+|+
T Consensus 165 ~l~~~~k~~~~~~~k~p~a~~L~rR~~~Ll~ 195 (211)
T 4b4c_A 165 DLSLTHKILPDDPDKKPQAKQLQTRADYLIK 195 (211)
T ss_dssp SSSCTTTSSCSSTTSSCCHHHHHHHHHHHHH
T ss_pred hcCccccccccccccCCChHHHHHHHHHHHH
Confidence 22 1 2 456778888777665
No 91
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=94.82 E-value=0.024 Score=47.67 Aligned_cols=39 Identities=26% Similarity=0.430 Sum_probs=31.6
Q ss_pred CCCCCCCCCccCCCCHHHHHHHHHHHHHhCCCCcccccc
Q 042846 4 APTYDENGMKKGAWSKEEDDKLRAYILKYGHWNWGELPK 42 (243)
Q Consensus 4 ~p~~~k~~lkKg~WT~EED~~L~~~V~~~g~~nW~~Ia~ 42 (243)
-|++.++......||.+||..|+.+|.+||-++|..|-.
T Consensus 124 i~~~~~~~~~~~~W~~~~D~~LL~Gi~k~G~g~w~~Ir~ 162 (211)
T 4b4c_A 124 IPCHTKAAHFDIDWGKEDDSNLLIGIYEYGYGSWEMIKM 162 (211)
T ss_dssp CCSCCCCCCSSSCCCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred cCCCCCCCCCCCCccHHHHHHHHHHHHHHCcCcHHHHHh
Confidence 355555555556799999999999999999999998865
No 92
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=94.50 E-value=0.026 Score=42.57 Aligned_cols=50 Identities=16% Similarity=0.261 Sum_probs=41.5
Q ss_pred CccCCCCHHHHHHHHHHHHHhCCCCccccccccc----CccchhhhhhhhhcccC
Q 042846 12 MKKGAWSKEEDDKLRAYILKYGHWNWGELPKFAG----LSRCGKSCRLRWMNYLR 62 (243)
Q Consensus 12 lkKg~WT~EED~~L~~~V~~~g~~nW~~Ia~~l~----~~Rt~kqcr~Rw~n~L~ 62 (243)
++-..||.||...|.+++++|.. .|..|+.... ..|+..++++||..+.+
T Consensus 28 L~~~~WT~eETd~LfdLc~~fdl-Rw~vI~DRy~~~~~~~RtvEdLK~RYY~V~~ 81 (93)
T 4iej_A 28 LHDDAWTKAETDHLFDLSRRFDL-RFVVIHDRYDHQQFKKRSVEDLKERYYHICA 81 (93)
T ss_dssp TCBTTBCHHHHHHHHHHHHHTTT-CHHHHHHHCCTTTSCCCCHHHHHHHHHHHHH
T ss_pred hCCCCCCHHHHHHHHHHHHHcCC-CeEEEeeccccCCCCCCCHHHHHHHHHHHHH
Confidence 34578999999999999999998 9998876432 26999999999987653
No 93
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=93.86 E-value=0.14 Score=35.95 Aligned_cols=47 Identities=11% Similarity=0.046 Sum_probs=39.7
Q ss_pred CCCCCCChHHHHHHHHHHHHhCCc---hHHhhccC--CCCCHHHHHHHHHHh
Q 042846 65 IKHGNYTKEEEDTIIRLRQQHGNK---WSLIAAKL--PGRTDNEIKNYWHTH 111 (243)
Q Consensus 65 i~r~~WT~EED~~Ll~lv~~~G~~---Ws~Ia~~l--pgRT~~q~knrw~~~ 111 (243)
-.+-.||+|..+..+++++++|.. +..|.+.| +|.|..+|+.|.+.+
T Consensus 5 k~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQKY 56 (64)
T 1irz_A 5 KPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKF 56 (64)
T ss_dssp CSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHH
T ss_pred CCCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 346789999999999999999965 77888864 789999999987654
No 94
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=92.63 E-value=0.18 Score=45.57 Aligned_cols=48 Identities=21% Similarity=0.365 Sum_probs=42.4
Q ss_pred CCCCChHHHHHHHHHHHHhCC-chHHhhccCCCCCHHHHHHHHHHhhcc
Q 042846 67 HGNYTKEEEDTIIRLRQQHGN-KWSLIAAKLPGRTDNEIKNYWHTHLKK 114 (243)
Q Consensus 67 r~~WT~EED~~Ll~lv~~~G~-~Ws~Ia~~lpgRT~~q~knrw~~~lkk 114 (243)
-+.||..+...++.++..||. +|..||..++|+|..+|+.+......+
T Consensus 110 F~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~~Kt~eEV~~Y~~vFw~r 158 (304)
T 1ofc_X 110 FTAWTKRDFNQFIKANEKYGRDDIDNIAKDVEGKTPEEVIEYNAVFWER 158 (304)
T ss_dssp CTTCCHHHHHHHHHHHHHHCTTCHHHHTTSSTTCCHHHHHHHHHHHHHH
T ss_pred hcccCHHHHHHHHHHHHHhCHHHHHHHHHHhcCCCHHHHHHHHHHHHHh
Confidence 458999999999999999995 799999999999999998877666654
No 95
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=91.33 E-value=0.19 Score=35.25 Aligned_cols=50 Identities=10% Similarity=0.109 Sum_probs=37.7
Q ss_pred CCccCCCCHHHHHHHHHHHHHhCCC--CcccccccccC-ccchhhhhhhhhcc
Q 042846 11 GMKKGAWSKEEDDKLRAYILKYGHW--NWGELPKFAGL-SRCGKSCRLRWMNY 60 (243)
Q Consensus 11 ~lkKg~WT~EED~~L~~~V~~~g~~--nW~~Ia~~l~~-~Rt~kqcr~Rw~n~ 60 (243)
...+-.||+|..++++.+|...|.. .+..|.+.|+. +.|..+++-+.+.|
T Consensus 4 ~k~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQKY 56 (64)
T 1irz_A 4 KKPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKF 56 (64)
T ss_dssp CCSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHH
T ss_pred CCCCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 3567889999999999999999952 15677776652 57888887765544
No 96
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=91.32 E-value=0.17 Score=44.96 Aligned_cols=28 Identities=39% Similarity=0.814 Sum_probs=25.8
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCcccccc
Q 042846 15 GAWSKEEDDKLRAYILKYGHWNWGELPK 42 (243)
Q Consensus 15 g~WT~EED~~L~~~V~~~g~~nW~~Ia~ 42 (243)
-.|+.+||..|+.+|.+||.++|..|..
T Consensus 169 c~W~~~dD~~LLvGIykyGyG~We~Ir~ 196 (270)
T 2xb0_X 169 SNWTKEEDEKLLIGVFKYGYGSWTQIRD 196 (270)
T ss_dssp SCCCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CCcChHHHHHHHHHHHHHcCCcHHHHhc
Confidence 4599999999999999999999999964
No 97
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=80.71 E-value=2.7 Score=37.11 Aligned_cols=47 Identities=13% Similarity=0.211 Sum_probs=41.3
Q ss_pred CCCCChHHHHHHHHHHHHhC---CchHHhhc--cCCCCCHHHHHHHHHHhhc
Q 042846 67 HGNYTKEEEDTIIRLRQQHG---NKWSLIAA--KLPGRTDNEIKNYWHTHLK 113 (243)
Q Consensus 67 r~~WT~EED~~Ll~lv~~~G---~~Ws~Ia~--~lpgRT~~q~knrw~~~lk 113 (243)
+++||..|-..|++.+.+|| .+|..|+. .|+.++...++.-++.++.
T Consensus 3 ~~~ltekEiR~l~Ra~~kfG~~~~R~e~I~~dA~L~~ks~~~i~~~~~~li~ 54 (270)
T 2xb0_X 3 LGSIGESEVRALYKAILKFGNLKEILDELIADGTLPVKSFEKYGETYDEMME 54 (270)
T ss_dssp TCCCCHHHHHHHHHHHHHHSSCTTCHHHHHHTTSSCCCCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCCHHHHHHHHHHHHH
Confidence 57899999999999999999 58999986 5899999999888876654
No 98
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=75.57 E-value=2.1 Score=39.66 Aligned_cols=46 Identities=24% Similarity=0.170 Sum_probs=34.7
Q ss_pred ccCCCCHHHHHHHHHHHHHhCC---CCccccccccc-----------Cccchhhhhhhhh
Q 042846 13 KKGAWSKEEDDKLRAYILKYGH---WNWGELPKFAG-----------LSRCGKSCRLRWM 58 (243)
Q Consensus 13 kKg~WT~EED~~L~~~V~~~g~---~nW~~Ia~~l~-----------~~Rt~kqcr~Rw~ 58 (243)
++..||.+||..|+-++.+||- ++|..|-..+. ..||+..+..|=.
T Consensus 227 k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwF~kSRT~~EL~rRc~ 286 (374)
T 2y9y_A 227 NKRTYSEEEDRFILLMLFKYGLDRDDVYELVRDEIRDCPLFELDFYFRSRTPVELARRGN 286 (374)
T ss_dssp SCCCSCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHCSGGGSCHHHHTCCHHHHHHHHH
T ss_pred CCCccCHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHHH
Confidence 4567999999999999999999 89999843321 1577766665543
No 99
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=64.03 E-value=6.9 Score=25.74 Aligned_cols=42 Identities=17% Similarity=0.093 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHhCCchHHhhccCCCCCHHHHHHHHHHhhccc
Q 042846 73 EEEDTIIRLRQQHGNKWSLIAAKLPGRTDNEIKNYWHTHLKKR 115 (243)
Q Consensus 73 EED~~Ll~lv~~~G~~Ws~Ia~~lpgRT~~q~knrw~~~lkk~ 115 (243)
+.+..++.++-..|-.+.+||..+ |-+...|+.+.+..+++-
T Consensus 18 ~~~r~il~l~~~~g~s~~eIA~~l-gis~~tv~~~~~ra~~~l 59 (70)
T 2o8x_A 18 TDQREALLLTQLLGLSYADAAAVC-GCPVGTIRSRVARARDAL 59 (70)
T ss_dssp HHHHHHHHHHHTSCCCHHHHHHHH-TSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHHH
Confidence 455566777778899999999999 889999998877665543
No 100
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=60.60 E-value=8.6 Score=26.01 Aligned_cols=43 Identities=23% Similarity=0.380 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHH----hCCchHHhhccCCCCCHHHHHHHHHHhhcccc
Q 042846 73 EEEDTIIRLRQQ----HGNKWSLIAAKLPGRTDNEIKNYWHTHLKKRK 116 (243)
Q Consensus 73 EED~~Ll~lv~~----~G~~Ws~Ia~~lpgRT~~q~knrw~~~lkk~~ 116 (243)
+.+..++.+.-. .|..+.+||..+ |-|...|+.+-...+++-.
T Consensus 13 ~~er~il~l~~~l~~~~~~s~~eIA~~l-~is~~tV~~~~~ra~~kLr 59 (73)
T 1ku3_A 13 EREAMVLKMRKGLIDGREHTLEEVGAYF-GVTRERIRQIENKALRKLK 59 (73)
T ss_dssp HHHHHHHHHHHTTTTSSCCCHHHHHHHH-TCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccCCCCCHHHHHHHH-CCCHHHHHHHHHHHHHHHH
Confidence 344455555554 578899999999 9999999998877665543
No 101
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=56.95 E-value=8.9 Score=25.54 Aligned_cols=42 Identities=17% Similarity=0.278 Sum_probs=31.5
Q ss_pred HHHHHHHHHH----HhCCchHHhhccCCCCCHHHHHHHHHHhhcccc
Q 042846 74 EEDTIIRLRQ----QHGNKWSLIAAKLPGRTDNEIKNYWHTHLKKRK 116 (243)
Q Consensus 74 ED~~Ll~lv~----~~G~~Ws~Ia~~lpgRT~~q~knrw~~~lkk~~ 116 (243)
.+..++.++- ..|..+.+||..+ |-|...|+.+.+..+++-.
T Consensus 9 ~er~il~l~~~l~~~~g~s~~eIA~~l-gis~~tV~~~~~ra~~kLr 54 (68)
T 2p7v_B 9 REAKVLRMRFGIDMNTDYTLEEVGKQF-DVTRERIRQIEAKALRKLR 54 (68)
T ss_dssp HHHHHHHHHTTTTSSSCCCHHHHHHHH-TCCHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHccCCCCCCCHHHHHHHH-CcCHHHHHHHHHHHHHHHH
Confidence 3444555554 3578899999999 9999999999887776543
No 102
>2rq5_A Protein jumonji; developmental protein, nucleus, repressor, transcription, transcription regulation; NMR {Mus musculus}
Probab=55.11 E-value=4.5 Score=31.41 Aligned_cols=45 Identities=13% Similarity=0.258 Sum_probs=33.2
Q ss_pred CcccccccccCccc----hhhhhhhhhcccCCCCCCCCCChHHHHHHHHHHH
Q 042846 36 NWGELPKFAGLSRC----GKSCRLRWMNYLRPDIKHGNYTKEEEDTIIRLRQ 83 (243)
Q Consensus 36 nW~~Ia~~l~~~Rt----~kqcr~Rw~n~L~p~i~r~~WT~EED~~Ll~lv~ 83 (243)
.|..||..|+...+ +...+..|.++|.|- ...+++|-..|.+-|.
T Consensus 65 ~W~~Va~~lg~p~~~~sa~~~Lr~~Y~k~L~~Y---E~~~~~e~~~l~~~v~ 113 (121)
T 2rq5_A 65 KWNKLADMLRIPKTAQDRLAKLQEAYCQYLLSY---DSLSPEEHRRLEKEVL 113 (121)
T ss_dssp CHHHHHHHTCCCTTCSSHHHHHHHHHHTTHHHH---HHCCHHHHHHHHHHHH
T ss_pred cHHHHHHHhCCCCCcCcHHHHHHHHHHHHhHHH---HCcCHHHHhhHHHHHH
Confidence 49999998874432 356788999998753 2477888888877664
No 103
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=54.07 E-value=62 Score=23.71 Aligned_cols=88 Identities=16% Similarity=0.142 Sum_probs=52.9
Q ss_pred CCCHHHHHHHHHHHHHhCCCCcccccccccCccchhhhhhhhhcccC------CCCCCCCCChHHHHHHHHHHHHhCCch
Q 042846 16 AWSKEEDDKLRAYILKYGHWNWGELPKFAGLSRCGKSCRLRWMNYLR------PDIKHGNYTKEEEDTIIRLRQQHGNKW 89 (243)
Q Consensus 16 ~WT~EED~~L~~~V~~~g~~nW~~Ia~~l~~~Rt~kqcr~Rw~n~L~------p~i~r~~WT~EED~~Ll~lv~~~G~~W 89 (243)
..|.++-..++.++ ..|. .-.+||+.+| .+...++ ||.+... ........+.+++..|+.+...-+-.=
T Consensus 6 ~~s~~~r~~i~~~~-~~G~-s~~~ia~~lg--is~~Tv~-r~~~~~~~~g~~~~~gr~~~l~~~~~~~i~~~~~~~~~s~ 80 (141)
T 1u78_A 6 ALSDTERAQLDVMK-LLNV-SLHEMSRKIS--RSRHCIR-VYLKDPVSYGTSKRAPRRKALSVRDERNVIRAASNSCKTA 80 (141)
T ss_dssp CCCHHHHHHHHHHH-HTTC-CHHHHHHHHT--CCHHHHH-HHHHSGGGTTCCCCCCCCCSSCHHHHHHHHHHHHHCCCCH
T ss_pred cCCHHHHHHHHHHH-HcCC-CHHHHHHHHC--cCHHHHH-HHHHcccccCCcCCCCCCCcCCHHHHHHHHHHHhCCCCCH
Confidence 56788877777766 4564 6789999987 5544443 3332211 111223578888888887733222334
Q ss_pred HHhhccCCC--CCHHHHHHHHH
Q 042846 90 SLIAAKLPG--RTDNEIKNYWH 109 (243)
Q Consensus 90 s~Ia~~lpg--RT~~q~knrw~ 109 (243)
.+|+..| | -+...|....+
T Consensus 81 ~~i~~~l-g~~~s~~tV~r~l~ 101 (141)
T 1u78_A 81 RDIRNEL-QLSASKRTILNVIK 101 (141)
T ss_dssp HHHHHHT-TCCSCHHHHHHHHH
T ss_pred HHHHHHH-CCCccHHHHHHHHH
Confidence 6888888 4 56666665543
No 104
>2li6_A SWI/SNF chromatin-remodeling complex subunit SWI1; ligand binding, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=53.74 E-value=7.8 Score=29.51 Aligned_cols=38 Identities=21% Similarity=0.406 Sum_probs=29.8
Q ss_pred HHHHHHHHhCC--------chHHhhccCCCCCHHHHHHHHHHhhcc
Q 042846 77 TIIRLRQQHGN--------KWSLIAAKLPGRTDNEIKNYWHTHLKK 114 (243)
Q Consensus 77 ~Ll~lv~~~G~--------~Ws~Ia~~lpgRT~~q~knrw~~~lkk 114 (243)
.|..+|...|+ .|.+||..|.--.+..+|.+|..+|-+
T Consensus 53 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~Lr~~Y~k~L~~ 98 (116)
T 2li6_A 53 YLYMLVQKFGGADQVTRTQQWSMVAQRLQISDYQQLESIYFRILLP 98 (116)
T ss_dssp HHHHHHHHHTSHHHHHHTTCHHHHHHHHTSCCTTHHHHHHHHHHSH
T ss_pred HHHHHHHHhcCHHHccccCcHHHHHHHhCCChHHHHHHHHHHHHHH
Confidence 37778888884 699999987444478999999888764
No 105
>2li6_A SWI/SNF chromatin-remodeling complex subunit SWI1; ligand binding, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=53.01 E-value=3.8 Score=31.33 Aligned_cols=39 Identities=18% Similarity=0.298 Sum_probs=30.3
Q ss_pred HHHHHHHHhCC-------CCcccccccccCccchhhhhhhhhcccCC
Q 042846 24 KLRAYILKYGH-------WNWGELPKFAGLSRCGKSCRLRWMNYLRP 63 (243)
Q Consensus 24 ~L~~~V~~~g~-------~nW~~Ia~~l~~~Rt~kqcr~Rw~n~L~p 63 (243)
+|..+|.+.|. ..|..||..+|... +..++..|.++|-|
T Consensus 53 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~-~~~Lr~~Y~k~L~~ 98 (116)
T 2li6_A 53 YLYMLVQKFGGADQVTRTQQWSMVAQRLQISD-YQQLESIYFRILLP 98 (116)
T ss_dssp HHHHHHHHHTSHHHHHHTTCHHHHHHHHTSCC-TTHHHHHHHHHHSH
T ss_pred HHHHHHHHhcCHHHccccCcHHHHHHHhCCCh-HHHHHHHHHHHHHH
Confidence 57777777764 36999999998443 78889999988864
No 106
>2jrz_A Histone demethylase jarid1C; bright/ARID domain, helical, structural genomics, structural genomics consortium, SGC, oxidoreductase; NMR {Homo sapiens} PDB: 2yqe_A
Probab=52.32 E-value=17 Score=27.67 Aligned_cols=38 Identities=11% Similarity=0.346 Sum_probs=28.5
Q ss_pred HHHHHHHHhCC--------chHHhhccCCCCC----HHHHHHHHHHhhcc
Q 042846 77 TIIRLRQQHGN--------KWSLIAAKLPGRT----DNEIKNYWHTHLKK 114 (243)
Q Consensus 77 ~Ll~lv~~~G~--------~Ws~Ia~~lpgRT----~~q~knrw~~~lkk 114 (243)
.|..+|...|+ .|.+|+..|.--. ..++|.+|..+|-+
T Consensus 44 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~a~~~Lk~~Y~k~L~~ 93 (117)
T 2jrz_A 44 SLSKIVVEEGGYEAICKDRRWARVAQRLNYPPGKNIGSLLRSHYERIVYP 93 (117)
T ss_dssp HHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCTTCTHHHHHHHHHHHTTHH
T ss_pred HHHHHHHHccCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHH
Confidence 47777888884 6999999873322 56889999887764
No 107
>2lm1_A Lysine-specific demethylase LID; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Drosophila melanogaster}
Probab=51.40 E-value=19 Score=26.66 Aligned_cols=38 Identities=24% Similarity=0.468 Sum_probs=27.9
Q ss_pred HHHHHHHHhCC--------chHHhhccCCCCC----HHHHHHHHHHhhcc
Q 042846 77 TIIRLRQQHGN--------KWSLIAAKLPGRT----DNEIKNYWHTHLKK 114 (243)
Q Consensus 77 ~Ll~lv~~~G~--------~Ws~Ia~~lpgRT----~~q~knrw~~~lkk 114 (243)
.|..+|...|+ .|.+||..|.--. +.++|..|..+|-+
T Consensus 48 ~Ly~~V~~~GG~~~V~~~~~W~~va~~lg~~~~~~~~~~lk~~Y~k~L~~ 97 (107)
T 2lm1_A 48 TLHRIVQEEGGMEQTTKDRKWAKVANRMQYPSSKSVGATLKAHYERILHP 97 (107)
T ss_dssp HHHHHHHHHTCHHHHHHHTTHHHHHHHTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHhHH
Confidence 46677777774 6999999884322 46889999887754
No 108
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=49.04 E-value=16 Score=25.79 Aligned_cols=41 Identities=22% Similarity=0.312 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHhCCchHHhhccCCCCCHHHHHHHHHHhhcc
Q 042846 73 EEEDTIIRLRQQHGNKWSLIAAKLPGRTDNEIKNYWHTHLKK 114 (243)
Q Consensus 73 EED~~Ll~lv~~~G~~Ws~Ia~~lpgRT~~q~knrw~~~lkk 114 (243)
+.+..++.++-..|-.-.+||..| |-+...|+.+.+..+++
T Consensus 40 ~~~r~vl~l~~~~g~s~~eIA~~l-gis~~tV~~~l~ra~~~ 80 (92)
T 3hug_A 40 AEHRAVIQRSYYRGWSTAQIATDL-GIAEGTVKSRLHYAVRA 80 (92)
T ss_dssp HHHHHHHHHHHTSCCCHHHHHHHH-TSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 345556677777788899999999 89999999988766553
No 109
>2jrz_A Histone demethylase jarid1C; bright/ARID domain, helical, structural genomics, structural genomics consortium, SGC, oxidoreductase; NMR {Homo sapiens} PDB: 2yqe_A
Probab=47.18 E-value=10 Score=28.94 Aligned_cols=41 Identities=15% Similarity=0.287 Sum_probs=30.0
Q ss_pred HHHHHHHHHhCC-------CCcccccccccCccc---hhhhhhhhhcccCC
Q 042846 23 DKLRAYILKYGH-------WNWGELPKFAGLSRC---GKSCRLRWMNYLRP 63 (243)
Q Consensus 23 ~~L~~~V~~~g~-------~nW~~Ia~~l~~~Rt---~kqcr~Rw~n~L~p 63 (243)
-+|..+|.+.|. ..|..|+..+|...+ +.+.+..|.++|.|
T Consensus 43 ~~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~a~~~Lk~~Y~k~L~~ 93 (117)
T 2jrz_A 43 YSLSKIVVEEGGYEAICKDRRWARVAQRLNYPPGKNIGSLLRSHYERIVYP 93 (117)
T ss_dssp HHHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCTTCTHHHHHHHHHHHTTHH
T ss_pred HHHHHHHHHccCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHH
Confidence 357778888874 369999999885432 56778888888864
No 110
>1ig6_A MRF-2, modulator recognition factor 2; DNA binding protein, DNA-binding motif, protein-DNA interaction; NMR {Homo sapiens} SCOP: a.4.3.1 PDB: 2oeh_A
Probab=47.05 E-value=6.1 Score=29.56 Aligned_cols=41 Identities=15% Similarity=0.184 Sum_probs=29.8
Q ss_pred HHHHHHHHHhCC-------CCcccccccccCcc----chhhhhhhhhcccCC
Q 042846 23 DKLRAYILKYGH-------WNWGELPKFAGLSR----CGKSCRLRWMNYLRP 63 (243)
Q Consensus 23 ~~L~~~V~~~g~-------~nW~~Ia~~l~~~R----t~kqcr~Rw~n~L~p 63 (243)
-+|..+|.+.|. ..|..||..+|... .+.+++..|.++|.|
T Consensus 36 ~~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~s~~~~Lk~~Y~k~L~~ 87 (107)
T 1ig6_A 36 WTMFQAAQKLGGYETITARRQWKHIYDELGGNPGSTSAATCTRRHYERLILP 87 (107)
T ss_dssp HHHHHHHHHTTHHHHHHHHTTHHHHHHHHTCCTTCTTTTTTHHHHHHHHTTT
T ss_pred HHHHHHHHHhcCHHHhcccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHH
Confidence 356777777753 36999999887433 246788889998876
No 111
>1kkx_A Transcription regulatory protein ADR6; ARID, DNA-binding domain, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.4.3.1 PDB: 1kn5_A
Probab=46.84 E-value=12 Score=28.88 Aligned_cols=39 Identities=21% Similarity=0.406 Sum_probs=30.1
Q ss_pred HHHHHHHhCC--------chHHhhccCCCCCHHHHHHHHHHhhcccc
Q 042846 78 IIRLRQQHGN--------KWSLIAAKLPGRTDNEIKNYWHTHLKKRK 116 (243)
Q Consensus 78 Ll~lv~~~G~--------~Ws~Ia~~lpgRT~~q~knrw~~~lkk~~ 116 (243)
|..+|...|+ .|.+|+..|.--.+..+|..|..+|-+--
T Consensus 53 Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~Lr~~Y~k~L~~yE 99 (123)
T 1kkx_A 53 LYMLVQKFGGADQVTRTQQWSMVAQRLQISDYQQLESIYFRILLPYE 99 (123)
T ss_dssp HHHHHTTTSCHHHHTTSHHHHHHHHHHTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHhccccccHHHHHHHHCCChHHHHHHHHHHHHHHHH
Confidence 6677777774 59999998744448999999999887643
No 112
>2rq5_A Protein jumonji; developmental protein, nucleus, repressor, transcription, transcription regulation; NMR {Mus musculus}
Probab=46.76 E-value=93 Score=23.80 Aligned_cols=79 Identities=20% Similarity=0.307 Sum_probs=52.0
Q ss_pred CCccCCCCHHHH--HHHHHHHHHhCCCCcccccccccCccchhhhhhhhhcccCCCCCCCCCChHHHHHHHHHHHHhCC-
Q 042846 11 GMKKGAWSKEED--DKLRAYILKYGHWNWGELPKFAGLSRCGKSCRLRWMNYLRPDIKHGNYTKEEEDTIIRLRQQHGN- 87 (243)
Q Consensus 11 ~lkKg~WT~EED--~~L~~~V~~~g~~nW~~Ia~~l~~~Rt~kqcr~Rw~n~L~p~i~r~~WT~EED~~Ll~lv~~~G~- 87 (243)
+.-+.+|.+.+. +.|.......|. .-..++.. + +|.-. --.|..+|.+.|+
T Consensus 4 ~~~~~r~~~~~~Fl~~L~~F~~~rGt-pl~~~P~i-~-gk~lD-----------------------L~~Ly~~V~~~GG~ 57 (121)
T 2rq5_A 4 GSLGRRWGPNVQRLACIKKHLRSQGI-TMDELPLI-G-GCELD-----------------------LACFFRLINEMGGM 57 (121)
T ss_dssp CCCSSCCCHHHHHHHHHHHHHHHTTC-CCSSCCEE-T-TEECC-----------------------HHHHHHHHHHTTSH
T ss_pred HHhhHhcCCcHHHHHHHHHHHHHcCC-CCCCCCcC-C-CEecc-----------------------HHHHHHHHHHcCcH
Confidence 345678988776 557777777787 55556543 3 33321 1237778888884
Q ss_pred -------chHHhhccC--CCC---CHHHHHHHHHHhhccc
Q 042846 88 -------KWSLIAAKL--PGR---TDNEIKNYWHTHLKKR 115 (243)
Q Consensus 88 -------~Ws~Ia~~l--pgR---T~~q~knrw~~~lkk~ 115 (243)
.|.+||..| |.- ....+|.+|..+|-+-
T Consensus 58 ~~Vt~~k~W~~Va~~lg~p~~~~sa~~~Lr~~Y~k~L~~Y 97 (121)
T 2rq5_A 58 QQVTDLKKWNKLADMLRIPKTAQDRLAKLQEAYCQYLLSY 97 (121)
T ss_dssp HHHHHTTCHHHHHHHTCCCTTCSSHHHHHHHHHHTTHHHH
T ss_pred HHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHhHHH
Confidence 699999987 322 2568899998877653
No 113
>2eqy_A RBP2 like, jumonji, at rich interactive domain 1B; ARID domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=46.25 E-value=23 Score=27.10 Aligned_cols=38 Identities=24% Similarity=0.428 Sum_probs=28.2
Q ss_pred HHHHHHHHhCC--------chHHhhccCCCC--C--HHHHHHHHHHhhcc
Q 042846 77 TIIRLRQQHGN--------KWSLIAAKLPGR--T--DNEIKNYWHTHLKK 114 (243)
Q Consensus 77 ~Ll~lv~~~G~--------~Ws~Ia~~lpgR--T--~~q~knrw~~~lkk 114 (243)
.|..+|...|+ .|.+|+..|.-- + +..+|.+|..+|-+
T Consensus 46 ~Ly~~V~~~GG~~~V~~~k~W~~V~~~lg~~~~~~~~~~Lr~~Y~k~L~~ 95 (122)
T 2eqy_A 46 QLNKLVAEEGGFAVVCKDRKWTKIATKMGFAPGKAVGSHIRGHYERILNP 95 (122)
T ss_dssp HHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCSSSHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHccCHHHHcCCCcHHHHHHHhCCCCCCcHHHHHHHHHHHHhHH
Confidence 36777888884 699999987332 1 46889999888765
No 114
>2cxy_A BAF250B subunit, HBAF250B; DNA-binding domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Homo sapiens} PDB: 2eh9_A 1ryu_A
Probab=45.31 E-value=24 Score=27.00 Aligned_cols=39 Identities=21% Similarity=0.253 Sum_probs=28.8
Q ss_pred HHHHHHHHhCC--------chHHhhccCCCCC----HHHHHHHHHHhhccc
Q 042846 77 TIIRLRQQHGN--------KWSLIAAKLPGRT----DNEIKNYWHTHLKKR 115 (243)
Q Consensus 77 ~Ll~lv~~~G~--------~Ws~Ia~~lpgRT----~~q~knrw~~~lkk~ 115 (243)
.|..+|...|+ .|.+|+..|.--+ ..++|..|..+|.+-
T Consensus 55 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~s~~~~Lk~~Y~k~L~~y 105 (125)
T 2cxy_A 55 RLYVCVKEIGGLAQVNKNKKWRELATNLNVGTSSSAASSLKKQYIQYLFAF 105 (125)
T ss_dssp HHHHHHHHHTSHHHHHHHTCHHHHHHHTTSCSSHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHcCCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHH
Confidence 36777778774 6999999873322 468899998888753
No 115
>1c20_A DEAD ringer protein; DNA-binding domain, ARID, AT-rich interaction domain, DNA- binding protein; NMR {Drosophila melanogaster} SCOP: a.4.3.1 PDB: 1kqq_A
Probab=44.80 E-value=11 Score=29.20 Aligned_cols=40 Identities=28% Similarity=0.427 Sum_probs=29.4
Q ss_pred HHHHHHHHhCC-------CCcccccccccCccc----hhhhhhhhhcccCC
Q 042846 24 KLRAYILKYGH-------WNWGELPKFAGLSRC----GKSCRLRWMNYLRP 63 (243)
Q Consensus 24 ~L~~~V~~~g~-------~nW~~Ia~~l~~~Rt----~kqcr~Rw~n~L~p 63 (243)
+|..+|.+.|. ..|..|+..+|...+ +.+++..|.++|.|
T Consensus 56 ~Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~sa~~~Lk~~Y~k~L~~ 106 (128)
T 1c20_A 56 ELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYP 106 (128)
T ss_dssp HHHHHHHHHTCHHHHHHHTTHHHHHHHTCCCSSCCSHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHhcCHHHcCccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHH
Confidence 56777777764 369999998875433 56778888888865
No 116
>2cxy_A BAF250B subunit, HBAF250B; DNA-binding domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Homo sapiens} PDB: 2eh9_A 1ryu_A
Probab=44.28 E-value=11 Score=29.08 Aligned_cols=40 Identities=20% Similarity=0.397 Sum_probs=28.3
Q ss_pred HHHHHHHHhCC-------CCcccccccccCccc---hhhhhhhhhcccCC
Q 042846 24 KLRAYILKYGH-------WNWGELPKFAGLSRC---GKSCRLRWMNYLRP 63 (243)
Q Consensus 24 ~L~~~V~~~g~-------~nW~~Ia~~l~~~Rt---~kqcr~Rw~n~L~p 63 (243)
+|..+|.+.|. ..|.+|+..++...+ +.+++..|.++|.|
T Consensus 55 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~s~~~~Lk~~Y~k~L~~ 104 (125)
T 2cxy_A 55 RLYVCVKEIGGLAQVNKNKKWRELATNLNVGTSSSAASSLKKQYIQYLFA 104 (125)
T ss_dssp HHHHHHHHHTSHHHHHHHTCHHHHHHHTTSCSSHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHcCCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHH
Confidence 56777777764 369999998885442 45778888887753
No 117
>2yqf_A Ankyrin-1; death domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yvi_A
Probab=41.42 E-value=32 Score=25.59 Aligned_cols=35 Identities=20% Similarity=0.368 Sum_probs=28.4
Q ss_pred ChHHHHHHHHHHHHhCCchHHhhccCCCCCHHHHHH
Q 042846 71 TKEEEDTIIRLRQQHGNKWSLIAAKLPGRTDNEIKN 106 (243)
Q Consensus 71 T~EED~~Ll~lv~~~G~~Ws~Ia~~lpgRT~~q~kn 106 (243)
+..-+..|..+....|..|..+|..| |=+..+|..
T Consensus 14 ~~~~~~~~~~ia~~lg~~Wk~LAr~L-g~s~~~I~~ 48 (111)
T 2yqf_A 14 TEQAEMKMAVISEHLGLSWAELAREL-QFSVEDINR 48 (111)
T ss_dssp SHHHHHHHHHHHHHHTTTHHHHHHHT-TCCHHHHHH
T ss_pred HhHHHHHHHHHHHHHhhhHHHHHHHc-CCCHHHHHH
Confidence 55667778888899999999999999 777766654
No 118
>3cz6_A DNA-binding protein RAP1; helical bundle, activator, chromosomal protein, nucleus, phosphoprotein, repressor, telomere; HET: MES; 1.85A {Saccharomyces cerevisiae} PDB: 3owt_A
Probab=41.20 E-value=21 Score=29.25 Aligned_cols=35 Identities=17% Similarity=0.393 Sum_probs=23.8
Q ss_pred hhhhhhhcccC-CCCCCCCCChHHHHHHH--------HHHHHhC
Q 042846 52 SCRLRWMNYLR-PDIKHGNYTKEEEDTII--------RLRQQHG 86 (243)
Q Consensus 52 qcr~Rw~n~L~-p~i~r~~WT~EED~~Ll--------~lv~~~G 86 (243)
++-+.+..-.. |....|.||.|+|+.|. ++.+++|
T Consensus 98 ~VL~~l~~GkgiP~N~pGIWT~eDDe~L~s~d~~dikrL~kKHG 141 (168)
T 3cz6_A 98 YFLNMFKDNVNPPPNVPGIWTHDDDESLKSNDQEQIRKLVKKHG 141 (168)
T ss_dssp HHHHHHHHTCSSCTTCTTCCCHHHHHHHHSCCHHHHHHHHHHHC
T ss_pred HHHHHHHhCCCCCCCCCCCCChhhHHHHHcCCHHHHHHHHHHhC
Confidence 44444544444 56779999999999875 5556665
No 119
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=41.04 E-value=42 Score=22.36 Aligned_cols=43 Identities=14% Similarity=0.095 Sum_probs=31.8
Q ss_pred CChHHHHHHHHHHHHhCCchHHhhccCCCCCHHHHHHHHHHhhccc
Q 042846 70 YTKEEEDTIIRLRQQHGNKWSLIAAKLPGRTDNEIKNYWHTHLKKR 115 (243)
Q Consensus 70 WT~EED~~Ll~lv~~~G~~Ws~Ia~~lpgRT~~q~knrw~~~lkk~ 115 (243)
.|+.|- .++.++ ..|..-.+||..| |-+...|+.+....+++-
T Consensus 17 L~~~e~-~vl~l~-~~g~s~~eIA~~l-~is~~tV~~~~~r~~~kl 59 (79)
T 1x3u_A 17 LSERER-QVLSAV-VAGLPNKSIAYDL-DISPRTVEVHRANVMAKM 59 (79)
T ss_dssp HCHHHH-HHHHHH-TTTCCHHHHHHHT-TSCHHHHHHHHHHHHHHT
T ss_pred CCHHHH-HHHHHH-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHHH
Confidence 344444 444555 6788899999999 889999999887766654
No 120
>2kk0_A AT-rich interactive domain-containing protein 3A; DEAD ringer, AT-rich interaction domain, NESG, ARID, cytopla binding, nucleus, phosphoprotein; NMR {Homo sapiens}
Probab=40.38 E-value=19 Score=28.46 Aligned_cols=40 Identities=28% Similarity=0.426 Sum_probs=29.6
Q ss_pred HHHHHHHHhCC-------CCcccccccccCcc----chhhhhhhhhcccCC
Q 042846 24 KLRAYILKYGH-------WNWGELPKFAGLSR----CGKSCRLRWMNYLRP 63 (243)
Q Consensus 24 ~L~~~V~~~g~-------~nW~~Ia~~l~~~R----t~kqcr~Rw~n~L~p 63 (243)
+|..+|.+.|. ..|..|+..||... .+.+++..|.++|-|
T Consensus 68 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~tsa~~~Lk~~Y~k~L~~ 118 (145)
T 2kk0_A 68 MLYVLVTEKGGLVEVINKKLWREITKGLNLPTSITSAAFTLRTQYMKYLYP 118 (145)
T ss_dssp HHHHHHHHHTCHHHHHHHTCHHHHHHHTTCCTTSTTHHHHHHHHHHHHSSH
T ss_pred HHHHHHHHhCCHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHHHH
Confidence 56677777764 36999999887533 256788899999876
No 121
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=40.33 E-value=31 Score=26.81 Aligned_cols=31 Identities=13% Similarity=0.123 Sum_probs=24.6
Q ss_pred HHhCCchHHhhccCCCCCHHHHHHHHHHhhcc
Q 042846 83 QQHGNKWSLIAAKLPGRTDNEIKNYWHTHLKK 114 (243)
Q Consensus 83 ~~~G~~Ws~Ia~~lpgRT~~q~knrw~~~lkk 114 (243)
...|-...+||..| |-+...|+++.+..+++
T Consensus 153 ~~~g~s~~EIA~~l-gis~~tV~~~l~ra~~~ 183 (194)
T 1or7_A 153 ELDGLSYEEIAAIM-DCPVGTVRSRIFRAREA 183 (194)
T ss_dssp HTTCCCHHHHHHHT-TSCHHHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 34567799999999 89999999988765543
No 122
>2q1z_A RPOE, ECF SIGE; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_A
Probab=39.26 E-value=20 Score=27.70 Aligned_cols=31 Identities=19% Similarity=0.059 Sum_probs=24.9
Q ss_pred HHhCCchHHhhccCCCCCHHHHHHHHHHhhcc
Q 042846 83 QQHGNKWSLIAAKLPGRTDNEIKNYWHTHLKK 114 (243)
Q Consensus 83 ~~~G~~Ws~Ia~~lpgRT~~q~knrw~~~lkk 114 (243)
-..|-...+||..| |-|...|+++.+..+++
T Consensus 148 ~~~g~s~~eIA~~l-gis~~tV~~~l~ra~~~ 178 (184)
T 2q1z_A 148 FFGDLTHRELAAET-GLPLGTIKSRIRLALDR 178 (184)
T ss_dssp HHSCCSSCCSTTTC-CCCCHHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 34567799999999 88999999998776654
No 123
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=37.55 E-value=32 Score=24.02 Aligned_cols=41 Identities=17% Similarity=0.227 Sum_probs=30.7
Q ss_pred HHHHHHHHHHH----hCCchHHhhccCCCCCHHHHHHHHHHhhccc
Q 042846 74 EEDTIIRLRQQ----HGNKWSLIAAKLPGRTDNEIKNYWHTHLKKR 115 (243)
Q Consensus 74 ED~~Ll~lv~~----~G~~Ws~Ia~~lpgRT~~q~knrw~~~lkk~ 115 (243)
.+..++.+.-- .|-.+.+||..| |-|...|+.+-...+++-
T Consensus 22 ~er~vl~l~~~l~~~~~~s~~EIA~~l-gis~~tV~~~~~ra~~kL 66 (87)
T 1tty_A 22 REAMVLRMRYGLLDGKPKTLEEVGQYF-NVTRERIRQIEVKALRKL 66 (87)
T ss_dssp HHHHHHHHHHTTTTSSCCCHHHHHHHH-TCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCCCCCCHHHHHHHH-CCCHHHHHHHHHHHHHHH
Confidence 44455555554 567899999999 999999999887666544
No 124
>2jxj_A Histone demethylase jarid1A; ARID domain, chromatin regulator, developmental protein, dioxygenase, iron, metal-binding, nucleus, oxidoreductase; NMR {Homo sapiens}
Probab=36.83 E-value=16 Score=26.51 Aligned_cols=37 Identities=22% Similarity=0.401 Sum_probs=26.0
Q ss_pred HHHHHHHHhCC--------chHHhhccCCC----CCHHHHHHHHHHhhc
Q 042846 77 TIIRLRQQHGN--------KWSLIAAKLPG----RTDNEIKNYWHTHLK 113 (243)
Q Consensus 77 ~Ll~lv~~~G~--------~Ws~Ia~~lpg----RT~~q~knrw~~~lk 113 (243)
.|..+|...|+ .|.+|+..|.- -.+.++|..|..+|-
T Consensus 40 ~Ly~~V~~~GG~~~V~~~~~W~~v~~~lg~~~~~~~~~~Lk~~Y~k~L~ 88 (96)
T 2jxj_A 40 ALSKIVASKGGFEMVTKEKKWSKVGSRLGYLPGKGTGSLLKSHYERILY 88 (96)
T ss_dssp HHHHHHHHHHTTHHHHHHTTHHHHHHHHTCCSCSCHHHHHHHHHTTTTH
T ss_pred HHHHHHHHcCCHHHHccCCcHHHHHHHhCCCCcCcHHHHHHHHHHHHHH
Confidence 36677777763 69999998632 125688888877664
No 125
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=36.44 E-value=45 Score=23.70 Aligned_cols=46 Identities=17% Similarity=0.086 Sum_probs=35.9
Q ss_pred CCCCChHHHHHHHHHHHHhCCchHHhhccCCCCCHHHHHHHHHHhhccc
Q 042846 67 HGNYTKEEEDTIIRLRQQHGNKWSLIAAKLPGRTDNEIKNYWHTHLKKR 115 (243)
Q Consensus 67 r~~WT~EED~~Ll~lv~~~G~~Ws~Ia~~lpgRT~~q~knrw~~~lkk~ 115 (243)
....|..|-++|.-++ .|..-.+||..| |-+...|+++...++++-
T Consensus 27 ~~~Lt~rE~~Vl~l~~--~G~s~~eIA~~L-~iS~~TV~~~~~~i~~Kl 72 (90)
T 3ulq_B 27 QDVLTPRECLILQEVE--KGFTNQEIADAL-HLSKRSIEYSLTSIFNKL 72 (90)
T ss_dssp --CCCHHHHHHHHHHH--TTCCHHHHHHHH-TCCHHHHHHHHHHHHHHT
T ss_pred ccCCCHHHHHHHHHHH--cCCCHHHHHHHH-CcCHHHHHHHHHHHHHHH
Confidence 4467887777665544 888999999999 899999999998877654
No 126
>2eqy_A RBP2 like, jumonji, at rich interactive domain 1B; ARID domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=36.33 E-value=15 Score=28.25 Aligned_cols=40 Identities=20% Similarity=0.421 Sum_probs=28.0
Q ss_pred HHHHHHHHhCC-------CCcccccccccCccc---hhhhhhhhhcccCC
Q 042846 24 KLRAYILKYGH-------WNWGELPKFAGLSRC---GKSCRLRWMNYLRP 63 (243)
Q Consensus 24 ~L~~~V~~~g~-------~nW~~Ia~~l~~~Rt---~kqcr~Rw~n~L~p 63 (243)
+|..+|.+.|. ..|..|+..+|...+ +.+.|..|.++|.|
T Consensus 46 ~Ly~~V~~~GG~~~V~~~k~W~~V~~~lg~~~~~~~~~~Lr~~Y~k~L~~ 95 (122)
T 2eqy_A 46 QLNKLVAEEGGFAVVCKDRKWTKIATKMGFAPGKAVGSHIRGHYERILNP 95 (122)
T ss_dssp HHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCSSSHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHccCHHHHcCCCcHHHHHHHhCCCCCCcHHHHHHHHHHHHhHH
Confidence 57777877764 369999998874332 35677778777753
No 127
>2kk0_A AT-rich interactive domain-containing protein 3A; DEAD ringer, AT-rich interaction domain, NESG, ARID, cytopla binding, nucleus, phosphoprotein; NMR {Homo sapiens}
Probab=36.08 E-value=41 Score=26.49 Aligned_cols=39 Identities=15% Similarity=0.227 Sum_probs=29.4
Q ss_pred HHHHHHHHhCC--------chHHhhccCC--CC---CHHHHHHHHHHhhccc
Q 042846 77 TIIRLRQQHGN--------KWSLIAAKLP--GR---TDNEIKNYWHTHLKKR 115 (243)
Q Consensus 77 ~Ll~lv~~~G~--------~Ws~Ia~~lp--gR---T~~q~knrw~~~lkk~ 115 (243)
.|..+|...|+ .|.+|+..|. .. ...++|..|..+|-+-
T Consensus 68 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~tsa~~~Lk~~Y~k~L~~y 119 (145)
T 2kk0_A 68 MLYVLVTEKGGLVEVINKKLWREITKGLNLPTSITSAAFTLRTQYMKYLYPY 119 (145)
T ss_dssp HHHHHHHHHTCHHHHHHHTCHHHHHHHTTCCTTSTTHHHHHHHHHHHHSSHH
T ss_pred HHHHHHHHhCCHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHHHHH
Confidence 46777888884 6999999873 22 2578999999888754
No 128
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=35.53 E-value=45 Score=23.73 Aligned_cols=46 Identities=24% Similarity=0.216 Sum_probs=34.8
Q ss_pred CCChHHHHHHHHHHHHhCCchHHhhccCCCCCHHHHHHHHHHhhccccC
Q 042846 69 NYTKEEEDTIIRLRQQHGNKWSLIAAKLPGRTDNEIKNYWHTHLKKRKN 117 (243)
Q Consensus 69 ~WT~EED~~Ll~lv~~~G~~Ws~Ia~~lpgRT~~q~knrw~~~lkk~~~ 117 (243)
..|+.|-++|. ++ ..|..-.+||..| |-+...|+.+-+..+++-..
T Consensus 27 ~Lt~~e~~vl~-l~-~~g~s~~eIA~~l-~is~~tV~~~l~r~~~kL~~ 72 (95)
T 3c57_A 27 GLTDQERTLLG-LL-SEGLTNKQIADRM-FLAEKTVKNYVSRLLAKLGM 72 (95)
T ss_dssp CCCHHHHHHHH-HH-HTTCCHHHHHHHH-TCCHHHHHHHHHHHHHHHTC
T ss_pred cCCHHHHHHHH-HH-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHHHcC
Confidence 45666655544 45 7888899999999 88999999998877665443
No 129
>1c20_A DEAD ringer protein; DNA-binding domain, ARID, AT-rich interaction domain, DNA- binding protein; NMR {Drosophila melanogaster} SCOP: a.4.3.1 PDB: 1kqq_A
Probab=35.52 E-value=45 Score=25.54 Aligned_cols=39 Identities=15% Similarity=0.221 Sum_probs=29.3
Q ss_pred HHHHHHHHhCC--------chHHhhccCC--CC---CHHHHHHHHHHhhccc
Q 042846 77 TIIRLRQQHGN--------KWSLIAAKLP--GR---TDNEIKNYWHTHLKKR 115 (243)
Q Consensus 77 ~Ll~lv~~~G~--------~Ws~Ia~~lp--gR---T~~q~knrw~~~lkk~ 115 (243)
.|..+|...|+ .|.+|+..|. .. ...++|..|..+|-+-
T Consensus 56 ~Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~sa~~~Lk~~Y~k~L~~y 107 (128)
T 1c20_A 56 ELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYPY 107 (128)
T ss_dssp HHHHHHHHHTCHHHHHHHTTHHHHHHHTCCCSSCCSHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHhcCHHHcCccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHH
Confidence 47777888884 6999999873 22 2578999999888653
No 130
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=34.88 E-value=1.5e+02 Score=22.52 Aligned_cols=77 Identities=10% Similarity=0.034 Sum_probs=46.3
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCcccccccccCccchhhhhhhhhcc------cCCCCC----CCCCChHHHHHHHHHHHH
Q 042846 15 GAWSKEEDDKLRAYILKYGHWNWGELPKFAGLSRCGKSCRLRWMNY------LRPDIK----HGNYTKEEEDTIIRLRQQ 84 (243)
Q Consensus 15 g~WT~EED~~L~~~V~~~g~~nW~~Ia~~l~~~Rt~kqcr~Rw~n~------L~p~i~----r~~WT~EED~~Ll~lv~~ 84 (243)
.+.|.++-..++.++. .|. .-.+||+.++ .+...++ ||.+. +.+... ....+.++.+.|++++.+
T Consensus 24 ~~~s~e~r~~ii~l~~-~G~-s~~~IA~~lg--is~~TV~-rwl~r~~~~G~~~~~~r~gr~~~~~~~~~~~~I~~~~~~ 98 (159)
T 2k27_A 24 RPLPEVVRQRIVDLAH-QGV-RPCDISRQLR--VSHGCVS-KILGRYYETGSIRPGVIGGSKPKVATPKVVEKIGDYKRQ 98 (159)
T ss_dssp CSSCHHHHHHHHHHHH-HTC-CHHHHHHHHT--CCSHHHH-HHHCCSSTTSCCCCCCCCCCCCCCCCTTHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH-cCC-CHHHHHHHHC--cCHHHHH-HHHHHHHhcCCccCCCCCCCCCCCCCHHHHHHHHHHHHH
Confidence 4688888888888774 564 7789999987 4444443 44433 222211 234777778888888765
Q ss_pred hC-CchHHhhccC
Q 042846 85 HG-NKWSLIAAKL 96 (243)
Q Consensus 85 ~G-~~Ws~Ia~~l 96 (243)
.. -.-.+|+..|
T Consensus 99 ~~~~s~~~i~~~l 111 (159)
T 2k27_A 99 NPTMFAWEIRDRL 111 (159)
T ss_dssp CSSSCHHHHHHHH
T ss_pred CccchHHHHHHHH
Confidence 43 1223444433
No 131
>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A*
Probab=34.68 E-value=24 Score=27.97 Aligned_cols=36 Identities=19% Similarity=0.347 Sum_probs=27.6
Q ss_pred ccccccccCccchhhhhhhhhcccCCCCCCCCCChHHHHHHHHH
Q 042846 38 GELPKFAGLSRCGKSCRLRWMNYLRPDIKHGNYTKEEEDTIIRL 81 (243)
Q Consensus 38 ~~Ia~~l~~~Rt~kqcr~Rw~n~L~p~i~r~~WT~EED~~Ll~l 81 (243)
..||..+. |+++.+||..+. + ...+|+||++.|.+-
T Consensus 119 ~~vA~~ik-gkt~eeir~~f~------I-~nd~t~eEe~~ir~e 154 (160)
T 2p1m_A 119 QTVADMIK-GKTPEEIRTTFN------I-KNDFTPEEEEEVRRE 154 (160)
T ss_dssp HHHHHTTT-TCCHHHHHHHTT------C-CCCCCHHHHHHHHHH
T ss_pred HHHHHHHc-CCCHHHHHHHcC------C-CCCCCHHHHHHHHHh
Confidence 56788887 899999999663 3 235999999887653
No 132
>2of5_H Leucine-rich repeat and death domain-containing protein; death domain complex, apoptosis; 3.20A {Homo sapiens}
Probab=34.47 E-value=33 Score=25.89 Aligned_cols=31 Identities=19% Similarity=0.500 Sum_probs=24.6
Q ss_pred HHHHHHHHHHhCCchHHhhccCCCCCHHHHHH
Q 042846 75 EDTIIRLRQQHGNKWSLIAAKLPGRTDNEIKN 106 (243)
Q Consensus 75 D~~Ll~lv~~~G~~Ws~Ia~~lpgRT~~q~kn 106 (243)
+..|..+.+..|..|..+|..| |=+..+|..
T Consensus 13 ~~~l~~ia~~lg~dWk~LAr~L-g~s~~~I~~ 43 (118)
T 2of5_H 13 QSNLLSVAGRLGLDWPAVALHL-GVSYREVQR 43 (118)
T ss_dssp HHHHHHHHHTCCTTHHHHHHHT-TCCHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHc-CCCHHHHHH
Confidence 4567788899999999999999 666666543
No 133
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=33.80 E-value=40 Score=22.06 Aligned_cols=45 Identities=18% Similarity=0.128 Sum_probs=33.8
Q ss_pred CCCChHHHHHHHHHHHHhCCchHHhhccCCCCCHHHHHHHHHHhhccc
Q 042846 68 GNYTKEEEDTIIRLRQQHGNKWSLIAAKLPGRTDNEIKNYWHTHLKKR 115 (243)
Q Consensus 68 ~~WT~EED~~Ll~lv~~~G~~Ws~Ia~~lpgRT~~q~knrw~~~lkk~ 115 (243)
...|+.|-+.|.- + ..|..-.+||..+ |-+...|+.+.....++-
T Consensus 10 ~~L~~~e~~il~~-~-~~g~s~~eIA~~l-~is~~tV~~~~~~~~~kl 54 (74)
T 1fse_A 10 PLLTKREREVFEL-L-VQDKTTKEIASEL-FISEKTVRNHISNAMQKL 54 (74)
T ss_dssp CCCCHHHHHHHHH-H-TTTCCHHHHHHHH-TSCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHH-H-HcCCCHHHHHHHH-CCCHHHHHHHHHHHHHHH
Confidence 3466666665544 4 6788899999999 889999999887766543
No 134
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=33.75 E-value=12 Score=29.43 Aligned_cols=42 Identities=17% Similarity=0.154 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHhCCCCcccccccccCccchhhhhhhhhcccCC
Q 042846 20 EEDDKLRAYILKYGHWNWGELPKFAGLSRCGKSCRLRWMNYLRP 63 (243)
Q Consensus 20 EED~~L~~~V~~~g~~nW~~Ia~~l~~~Rt~kqcr~Rw~n~L~p 63 (243)
+-|.+|+.++++.|...+.+||+.+| -+...|+.|.......
T Consensus 3 ~~d~~il~~L~~~~~~s~~~la~~lg--~s~~tv~~rl~~L~~~ 44 (162)
T 3i4p_A 3 RLDRKILRILQEDSTLAVADLAKKVG--LSTTPCWRRIQKMEED 44 (162)
T ss_dssp HHHHHHHHHHTTCSCSCHHHHHHHHT--CCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHC--cCHHHHHHHHHHHHHC
Confidence 45888999999999889999999997 7778888887766433
No 135
>2of5_A Death domain-containing protein cradd; death domain complex, apoptosis; 3.20A {Homo sapiens}
Probab=32.92 E-value=40 Score=25.53 Aligned_cols=39 Identities=23% Similarity=0.422 Sum_probs=26.6
Q ss_pred CCCCCCCChHHHHHHHHHHHHhCCchHHhhccCCCCCHHHHHH
Q 042846 64 DIKHGNYTKEEEDTIIRLRQQHGNKWSLIAAKLPGRTDNEIKN 106 (243)
Q Consensus 64 ~i~r~~WT~EED~~Ll~lv~~~G~~Ws~Ia~~lpgRT~~q~kn 106 (243)
.+-...=|.+ .|..+.+..|..|..+|+.| |=+..+|..
T Consensus 16 ~~~~~~~t~~---~l~~Ia~~lG~~Wk~LAR~L-Glse~dId~ 54 (114)
T 2of5_A 16 HILNSSPSDR---QINQLAQRLGPEWEPMVLSL-GLSQTDIYR 54 (114)
T ss_dssp CCTTSCCCHH---HHHHHHHTCCSTHHHHHHTT-TCCHHHHHH
T ss_pred hhhcCCCCHH---HHHHHHHHHhhhHHHHHHHc-CCCHHHHHH
Confidence 3333344444 45666889999999999998 666665543
No 136
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=32.84 E-value=49 Score=22.81 Aligned_cols=44 Identities=30% Similarity=0.304 Sum_probs=33.6
Q ss_pred CCChHHHHHHHHHHHHhCCchHHhhccCCCCCHHHHHHHHHHhhccc
Q 042846 69 NYTKEEEDTIIRLRQQHGNKWSLIAAKLPGRTDNEIKNYWHTHLKKR 115 (243)
Q Consensus 69 ~WT~EED~~Ll~lv~~~G~~Ws~Ia~~lpgRT~~q~knrw~~~lkk~ 115 (243)
..|+.|-++|. ++ ..|..-.+||..| |-+...|+.+-+..+++-
T Consensus 21 ~Lt~~e~~vl~-l~-~~g~s~~eIA~~l-~is~~tV~~~l~r~~~kL 64 (82)
T 1je8_A 21 QLTPRERDILK-LI-AQGLPNKMIARRL-DITESTVKVHVKHMLKKM 64 (82)
T ss_dssp GSCHHHHHHHH-HH-TTTCCHHHHHHHH-TSCHHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHH-HH-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHHH
Confidence 46666665544 44 6788899999999 899999999888766654
No 137
>1wxp_A THO complex subunit 1; death domain, structural genomics, nuclear matrix, riken structural genomics/proteomics initiative, RSGI, transport protein; NMR {Homo sapiens}
Probab=32.70 E-value=51 Score=24.42 Aligned_cols=31 Identities=26% Similarity=0.545 Sum_probs=23.8
Q ss_pred HHHHHHHHHHhCCchHHhhccCCCCCHHHHHH
Q 042846 75 EDTIIRLRQQHGNKWSLIAAKLPGRTDNEIKN 106 (243)
Q Consensus 75 D~~Ll~lv~~~G~~Ws~Ia~~lpgRT~~q~kn 106 (243)
+..|-.+....|..|..+|++| |=+..+|..
T Consensus 18 ~~~~~~ia~~lg~~Wk~LAr~L-g~~~~~I~~ 48 (110)
T 1wxp_A 18 GEQIEVFANKLGEQWKILAPYL-EMKDSEIRQ 48 (110)
T ss_dssp HHHHHHHHHHHTTTHHHHTTTT-TCCHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHh-CCCHHHHHH
Confidence 3455667788899999999999 766666654
No 138
>2o71_A Death domain-containing protein cradd; raidd, apoptosis; 2.00A {Homo sapiens}
Probab=31.95 E-value=43 Score=25.41 Aligned_cols=29 Identities=28% Similarity=0.519 Sum_probs=22.2
Q ss_pred HHHHHHHHhCCchHHhhccCCCCCHHHHHH
Q 042846 77 TIIRLRQQHGNKWSLIAAKLPGRTDNEIKN 106 (243)
Q Consensus 77 ~Ll~lv~~~G~~Ws~Ia~~lpgRT~~q~kn 106 (243)
.|..+.+..|..|..+|+.| |=+..+|..
T Consensus 26 ~l~~Ia~~LG~~Wk~LAR~L-Glse~dId~ 54 (115)
T 2o71_A 26 QINQLAQRLGPEWEPMVLSL-GLSQTDIYR 54 (115)
T ss_dssp HHHHHHHHCCTTHHHHHHHT-TCCHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHc-CCCHHHHHH
Confidence 46666888999999999998 666665543
No 139
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=31.92 E-value=55 Score=24.25 Aligned_cols=41 Identities=10% Similarity=0.039 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHhCCchHHhhccCCCCCHHHHHHHHHHhhcc
Q 042846 73 EEEDTIIRLRQQHGNKWSLIAAKLPGRTDNEIKNYWHTHLKK 114 (243)
Q Consensus 73 EED~~Ll~lv~~~G~~Ws~Ia~~lpgRT~~q~knrw~~~lkk 114 (243)
+.+..++.++-..|-.-.+||..| |-+...|+.+.+..+++
T Consensus 28 ~~~r~vl~l~~~~g~s~~EIA~~l-giS~~tV~~~l~ra~~k 68 (113)
T 1xsv_A 28 NKQRNYLELFYLEDYSLSEIADTF-NVSRQAVYDNIRRTGDL 68 (113)
T ss_dssp HHHHHHHHHHHTSCCCHHHHHHHT-TCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 344556677777888999999999 88999999887665543
No 140
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=31.19 E-value=56 Score=20.58 Aligned_cols=38 Identities=16% Similarity=0.187 Sum_probs=29.8
Q ss_pred HHHHHHHHHhCCchHHhhccCCCCCHHHHHHHHHHhhccc
Q 042846 76 DTIIRLRQQHGNKWSLIAAKLPGRTDNEIKNYWHTHLKKR 115 (243)
Q Consensus 76 ~~Ll~lv~~~G~~Ws~Ia~~lpgRT~~q~knrw~~~lkk~ 115 (243)
..++.+ -..|-.-.+||..| |-+...|+.+....+++-
T Consensus 4 ~~vl~l-~~~g~s~~eIA~~l-~is~~tV~~~~~~~~~kl 41 (61)
T 2jpc_A 4 RQVLKL-IDEGYTNHGISEKL-HISIKTVETHRMNMMRKL 41 (61)
T ss_dssp HHHHHH-HHTSCCSHHHHHHT-CSCHHHHHHHHHHHHHHH
T ss_pred HHHHHH-HHcCCCHHHHHHHh-CCCHHHHHHHHHHHHHHH
Confidence 445555 36688889999999 889999999988776653
No 141
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=30.64 E-value=1.7e+02 Score=21.83 Aligned_cols=79 Identities=10% Similarity=0.052 Sum_probs=47.2
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCCcccccccccCccchhhhh---hhhhc--ccCCCCC----CCCCChHHHHHHHHHHHH
Q 042846 14 KGAWSKEEDDKLRAYILKYGHWNWGELPKFAGLSRCGKSCR---LRWMN--YLRPDIK----HGNYTKEEEDTIIRLRQQ 84 (243)
Q Consensus 14 Kg~WT~EED~~L~~~V~~~g~~nW~~Ia~~l~~~Rt~kqcr---~Rw~n--~L~p~i~----r~~WT~EED~~Ll~lv~~ 84 (243)
....|.++-..++.++. .|. .-.+||+.+| .+...++ .+|.. .+.+... ....+.+..+.|++++.+
T Consensus 30 ~~~~s~e~r~~iv~~~~-~G~-s~~~iA~~lg--is~~TV~rw~~~~~~~G~~~~~~r~gr~~~~~~~~~~~~I~~~~~~ 105 (149)
T 1k78_A 30 GRPLPDVVRQRIVELAH-QGV-RPCDISRQLR--VSHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVEKIAEYKRQ 105 (149)
T ss_dssp TSCCCHHHHHHHHHHHH-TTC-CHHHHHHHHT--CCHHHHHHHHHHHHHHSCCCCCCCCCCCCSSSCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH-cCC-CHHHHHHHHC--cCHHHHHHHHHHHHHcCCCCccCCCCCCCCCCCHHHHHHHHHHHHh
Confidence 35789988888888774 564 6789999987 4444433 23322 1333221 234788888888888766
Q ss_pred hCC-chHHhhccC
Q 042846 85 HGN-KWSLIAAKL 96 (243)
Q Consensus 85 ~G~-~Ws~Ia~~l 96 (243)
.+. .-.+|+..|
T Consensus 106 ~~~~s~~~i~~~l 118 (149)
T 1k78_A 106 NPTMFAWEIRDRL 118 (149)
T ss_dssp CTTCCHHHHHHHH
T ss_pred CcchhHHHHHHHH
Confidence 432 223555544
No 142
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=30.57 E-value=52 Score=26.23 Aligned_cols=39 Identities=15% Similarity=0.097 Sum_probs=28.5
Q ss_pred HHHHHHHHHHhCCchHHhhccCCCCCHHHHHHHHHHhhcc
Q 042846 75 EDTIIRLRQQHGNKWSLIAAKLPGRTDNEIKNYWHTHLKK 114 (243)
Q Consensus 75 D~~Ll~lv~~~G~~Ws~Ia~~lpgRT~~q~knrw~~~lkk 114 (243)
+..++.++-..|-...+||..| |-|...|+.+.+..+++
T Consensus 192 ~r~vl~l~~~~g~s~~EIA~~l-gis~~~V~~~~~ra~~~ 230 (239)
T 1rp3_A 192 EKLVIQLIFYEELPAKEVAKIL-ETSVSRVSQLKAKALER 230 (239)
T ss_dssp HHHHHHHHHTSCCCHHHHHHHT-TSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHh-CCCHHHHHHHHHHHHHH
Confidence 3344445445677899999999 89999999887665543
No 143
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=29.95 E-value=44 Score=24.84 Aligned_cols=30 Identities=27% Similarity=0.248 Sum_probs=24.0
Q ss_pred HhCCchHHhhccCCCCCHHHHHHHHHHhhcc
Q 042846 84 QHGNKWSLIAAKLPGRTDNEIKNYWHTHLKK 114 (243)
Q Consensus 84 ~~G~~Ws~Ia~~lpgRT~~q~knrw~~~lkk 114 (243)
..|-...+||..| |-|...|+++.+..+++
T Consensus 122 ~~g~s~~EIA~~l-gis~~tV~~~~~ra~~~ 151 (164)
T 3mzy_A 122 IRGYSYREIATIL-SKNLKSIDNTIQRIRKK 151 (164)
T ss_dssp TTTCCHHHHHHHH-TCCHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 4567799999999 89999999888765543
No 144
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=28.95 E-value=52 Score=25.62 Aligned_cols=45 Identities=13% Similarity=0.120 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHhCC-chHHhhccCCCCCHHHHHHHHHHhhccccCC
Q 042846 73 EEEDTIIRLRQQHGN-KWSLIAAKLPGRTDNEIKNYWHTHLKKRKNK 118 (243)
Q Consensus 73 EED~~Ll~lv~~~G~-~Ws~Ia~~lpgRT~~q~knrw~~~lkk~~~k 118 (243)
+-|..|+.+.++.|. .+.+||+.+ |=|...|+.|.+.+.+...-+
T Consensus 3 ~~d~~il~~L~~~~~~s~~~la~~l-g~s~~tv~~rl~~L~~~g~i~ 48 (162)
T 3i4p_A 3 RLDRKILRILQEDSTLAVADLAKKV-GLSTTPCWRRIQKMEEDGVIR 48 (162)
T ss_dssp HHHHHHHHHHTTCSCSCHHHHHHHH-TCCHHHHHHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCCee
Confidence 457788888877764 699999999 999999999999988877655
No 145
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=28.04 E-value=51 Score=23.02 Aligned_cols=44 Identities=23% Similarity=0.139 Sum_probs=33.6
Q ss_pred CCChHHHHHHHHHHHHhCCchHHhhccCCCCCHHHHHHHHHHhhccc
Q 042846 69 NYTKEEEDTIIRLRQQHGNKWSLIAAKLPGRTDNEIKNYWHTHLKKR 115 (243)
Q Consensus 69 ~WT~EED~~Ll~lv~~~G~~Ws~Ia~~lpgRT~~q~knrw~~~lkk~ 115 (243)
..|+.|-+.|. ++ ..|..-.+||..| |-+...|+.+-...+++-
T Consensus 29 ~Lt~~e~~vl~-l~-~~g~s~~eIA~~l-~is~~tV~~~l~r~~~kL 72 (91)
T 2rnj_A 29 MLTEREMEILL-LI-AKGYSNQEIASAS-HITIKTVKTHVSNILSKL 72 (91)
T ss_dssp GCCSHHHHHHH-HH-HTTCCTTHHHHHH-TCCHHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHH-HH-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHHH
Confidence 45666655554 44 6788899999999 899999999988776654
No 146
>3e7l_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; 2.25A {Aquifex aeolicus} PDB: 4fth_A
Probab=25.48 E-value=86 Score=20.50 Aligned_cols=33 Identities=12% Similarity=-0.013 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHhCCchHHhhccCCCCCHHHHHH
Q 042846 73 EEEDTIIRLRQQHGNKWSLIAAKLPGRTDNEIKN 106 (243)
Q Consensus 73 EED~~Ll~lv~~~G~~Ws~Ia~~lpgRT~~q~kn 106 (243)
-|.+.|.++...+|++.++.|+.| |=+...+..
T Consensus 19 ~E~~~i~~aL~~~~gn~~~aA~~L-Gisr~tL~r 51 (63)
T 3e7l_A 19 FEKIFIEEKLREYDYDLKRTAEEI-GIDLSNLYR 51 (63)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHH-TCCHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHH-CcCHHHHHH
Confidence 467788999999999999999988 545544443
No 147
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=24.93 E-value=1.3e+02 Score=21.67 Aligned_cols=46 Identities=20% Similarity=0.155 Sum_probs=35.9
Q ss_pred CCCCChHHHHHHHHHHHHhCCchHHhhccCCCCCHHHHHHHHHHhhccc
Q 042846 67 HGNYTKEEEDTIIRLRQQHGNKWSLIAAKLPGRTDNEIKNYWHTHLKKR 115 (243)
Q Consensus 67 r~~WT~EED~~Ll~lv~~~G~~Ws~Ia~~lpgRT~~q~knrw~~~lkk~ 115 (243)
....|+.|-+.|.- + ..|..-.+||..| |-+...|+.+-..++++-
T Consensus 32 ~~~Lt~re~~Vl~l-~-~~G~s~~EIA~~L-~iS~~TV~~~l~ri~~KL 77 (99)
T 1p4w_A 32 DKRLSPKESEVLRL-F-AEGFLVTEIAKKL-NRSIKTISSQKKSAMMKL 77 (99)
T ss_dssp SSSCCHHHHHHHHH-H-HHTCCHHHHHHHH-TSCHHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHH-H-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHHH
Confidence 45678888876644 3 3688899999999 889999999888776653
No 148
>1ntc_A Protein (nitrogen regulation protein (NTRC)); helix-turn-helix, FIS, four-helix bundle, transcription regulation; NMR {Salmonella typhimurium} SCOP: a.4.1.12
Probab=24.57 E-value=1e+02 Score=21.66 Aligned_cols=34 Identities=12% Similarity=0.016 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHhCCchHHhhccCCCCCHHHHHHH
Q 042846 73 EEEDTIIRLRQQHGNKWSLIAAKLPGRTDNEIKNY 107 (243)
Q Consensus 73 EED~~Ll~lv~~~G~~Ws~Ia~~lpgRT~~q~knr 107 (243)
-|...|.+++..+|++-++.|+.| |=+...+..+
T Consensus 51 ~E~~~i~~aL~~~~gn~~~aA~~L-GIsr~tL~rk 84 (91)
T 1ntc_A 51 LERTLLTTALRHTQGHKQEAARLL-GWGAATLTAK 84 (91)
T ss_dssp HHHHHHHHHHHHTTTCTTHHHHHT-TCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHH-CcCHHHHHHH
Confidence 467788899999999999999998 6666555444
No 149
>3v7d_A Suppressor of kinetochore protein 1; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_A* 3mks_A*
Probab=24.19 E-value=34 Score=27.54 Aligned_cols=35 Identities=26% Similarity=0.351 Sum_probs=27.1
Q ss_pred ccccccccCccchhhhhhhhhcccCCCCCCCCCChHHHHHHHH
Q 042846 38 GELPKFAGLSRCGKSCRLRWMNYLRPDIKHGNYTKEEEDTIIR 80 (243)
Q Consensus 38 ~~Ia~~l~~~Rt~kqcr~Rw~n~L~p~i~r~~WT~EED~~Ll~ 80 (243)
..||..+. |+++.++|..+. | ...+|+||++.|.+
T Consensus 127 ~~vA~~ik-gktpeeiR~~f~------I-~nd~t~eEe~~ir~ 161 (169)
T 3v7d_A 127 KVVAEMIR-GRSPEEIRRTFN------I-VNDFTPEEEAAIRR 161 (169)
T ss_dssp HHHHHHHT-TCCHHHHHHHHT------C-CCCCCHHHHHHHHT
T ss_pred HHHHHHHc-CCCHHHHHHHcC------C-CCCCCHHHHHHHHH
Confidence 66788887 899999999663 2 23599999998753
No 150
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.83 E-value=1.7e+02 Score=19.72 Aligned_cols=54 Identities=7% Similarity=0.096 Sum_probs=40.0
Q ss_pred ccCCCCCCCCCChHHHHHHHHHHHHhC--Cc--hHHhhccCCCCCHHHHHHHHHHhhcc
Q 042846 60 YLRPDIKHGNYTKEEEDTIIRLRQQHG--NK--WSLIAAKLPGRTDNEIKNYWHTHLKK 114 (243)
Q Consensus 60 ~L~p~i~r~~WT~EED~~Ll~lv~~~G--~~--Ws~Ia~~lpgRT~~q~knrw~~~lkk 114 (243)
..+|...+..+|.+.-..|...+.... .. =..||..+ |=+..+|+..|.+.-.+
T Consensus 5 ~~~~~~~R~~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~~-~l~~~qV~~WFqNrR~k 62 (76)
T 2dn0_A 5 SSGASIYKNKKSHEQLSALKGSFCRNQFPGQSEVEHLTKVT-GLSTREVRKWFSDRRYH 62 (76)
T ss_dssp CSCCCCCCCCCCHHHHHHHHHHHHHSSSCCSHHHHHHHHHH-CCCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCccCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHh-CCChHHhhHHhHHHhHH
Confidence 456777889999999999988876533 21 35677777 88999999988665433
No 151
>3cz6_A DNA-binding protein RAP1; helical bundle, activator, chromosomal protein, nucleus, phosphoprotein, repressor, telomere; HET: MES; 1.85A {Saccharomyces cerevisiae} PDB: 3owt_A
Probab=22.72 E-value=47 Score=27.22 Aligned_cols=18 Identities=22% Similarity=0.663 Sum_probs=14.4
Q ss_pred CCCccCCCCHHHHHHHHH
Q 042846 10 NGMKKGAWSKEEDDKLRA 27 (243)
Q Consensus 10 ~~lkKg~WT~EED~~L~~ 27 (243)
|.-..|-||+|+|+.|..
T Consensus 110 P~N~pGIWT~eDDe~L~s 127 (168)
T 3cz6_A 110 PPNVPGIWTHDDDESLKS 127 (168)
T ss_dssp CTTCTTCCCHHHHHHHHS
T ss_pred CCCCCCCCChhhHHHHHc
Confidence 345689999999998863
No 152
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=22.02 E-value=90 Score=23.13 Aligned_cols=40 Identities=15% Similarity=0.170 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHhCCchHHhhccCCCCCHHHHHHHHHHhhc
Q 042846 73 EEEDTIIRLRQQHGNKWSLIAAKLPGRTDNEIKNYWHTHLK 113 (243)
Q Consensus 73 EED~~Ll~lv~~~G~~Ws~Ia~~lpgRT~~q~knrw~~~lk 113 (243)
+.+..++.++-..|..-.+||..+ |-|...|+.+.+...+
T Consensus 25 ~~~r~vl~l~y~~g~s~~EIA~~l-giS~~tV~~~l~ra~~ 64 (113)
T 1s7o_A 25 DKQMNYIELYYADDYSLAEIADEF-GVSRQAVYDNIKRTEK 64 (113)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHH-TCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHH
Confidence 344556667777899999999999 9999999988776554
No 153
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=21.43 E-value=1.3e+02 Score=22.69 Aligned_cols=45 Identities=11% Similarity=0.107 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHhC-CchHHhhccCCCCCHHHHHHHHHHhhccccCC
Q 042846 73 EEEDTIIRLRQQHG-NKWSLIAAKLPGRTDNEIKNYWHTHLKKRKNK 118 (243)
Q Consensus 73 EED~~Ll~lv~~~G-~~Ws~Ia~~lpgRT~~q~knrw~~~lkk~~~k 118 (243)
+-|..|+.+....| -.+.+||+.+ |=+...|..+.+.+.+...-+
T Consensus 9 ~~d~~il~~L~~~~~~s~~ela~~l-g~s~~tv~~~l~~L~~~G~i~ 54 (151)
T 2dbb_A 9 RVDMQLVKILSENSRLTYRELADIL-NTTRQRIARRIDKLKKLGIIR 54 (151)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHT-TSCHHHHHHHHHHHHHHTSEE
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCCEE
Confidence 44566777777666 4699999999 889999999999887766543
No 154
>1fad_A Protein (FADD protein); apoptosis, death domain; NMR {Mus musculus} SCOP: a.77.1.2
Probab=21.35 E-value=50 Score=23.76 Aligned_cols=30 Identities=13% Similarity=0.295 Sum_probs=23.2
Q ss_pred HHHHHHHHHhCCchHHhhccCCCCCHHHHHH
Q 042846 76 DTIIRLRQQHGNKWSLIAAKLPGRTDNEIKN 106 (243)
Q Consensus 76 ~~Ll~lv~~~G~~Ws~Ia~~lpgRT~~q~kn 106 (243)
..+..+....|..|..+|..| |=+..+|..
T Consensus 15 ~~~~~ia~~lg~~Wk~Lar~L-g~~~~~I~~ 44 (99)
T 1fad_A 15 VAFDIVCDNVGRDWKRLAREL-KVSEAKMDG 44 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT-TCCHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHc-CCCHHHHHH
Confidence 345667788899999999999 777776654
No 155
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=21.28 E-value=42 Score=26.66 Aligned_cols=42 Identities=19% Similarity=0.188 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHhCCCCcccccccccCccchhhhhhhhhcccCC
Q 042846 20 EEDDKLRAYILKYGHWNWGELPKFAGLSRCGKSCRLRWMNYLRP 63 (243)
Q Consensus 20 EED~~L~~~V~~~g~~nW~~Ia~~l~~~Rt~kqcr~Rw~n~L~p 63 (243)
+-|.+|+.++++.|...+.+||+.+| -+...|+.|.......
T Consensus 27 ~~d~~IL~~L~~~~~~s~~eLA~~lg--lS~~tv~~rl~~L~~~ 68 (171)
T 2e1c_A 27 EIDKKIIKILQNDGKAPLREISKITG--LAESTIHERIRKLRES 68 (171)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHHT--SCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHC--cCHHHHHHHHHHHHHC
Confidence 55778888899888889999999997 6788888877765443
No 156
>2ast_A S-phase kinase-associated protein 1A; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} PDB: 2ass_A* 2e31_B 2e32_B 3l2o_A 1p22_B* 2ovr_A* 2ovp_A 1fqv_B* 2ovq_A*
Probab=21.07 E-value=42 Score=26.36 Aligned_cols=55 Identities=13% Similarity=0.101 Sum_probs=34.5
Q ss_pred CHHHHHHHHHHHHHhCCCC-----cccccccccCccchhhhhhhhhcccCCCCCCCCCChHHHHHHHH
Q 042846 18 SKEEDDKLRAYILKYGHWN-----WGELPKFAGLSRCGKSCRLRWMNYLRPDIKHGNYTKEEEDTIIR 80 (243)
Q Consensus 18 T~EED~~L~~~V~~~g~~n-----W~~Ia~~l~~~Rt~kqcr~Rw~n~L~p~i~r~~WT~EED~~Ll~ 80 (243)
+++.-.-|+.+-.-.+... =..||..+. |+++.+||..+. + ...+|+||++.|.+
T Consensus 95 d~~~l~eLl~AAnyL~I~~Lld~~c~~va~~i~-gkt~eeir~~f~------I-~~d~t~eEe~~ir~ 154 (159)
T 2ast_A 95 DQGTLFELILAANYLDIKGLLDVTCKTVANMIK-GKTPEEIRKTFN------I-KNDFTEEEEAQVRK 154 (159)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHS-SCCHHHHHHHTT------C-CCCSCTTHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHc-CCCHHHHHHHcC------C-CCCCCHHHHHHHHH
Confidence 4444444444444444311 245777787 899999999773 2 23599999987764
No 157
>2lfw_A PHYR sigma-like domain; signal transduction, response regulator, sigma factor mimicr sigma factor, general stress response, signaling protein; NMR {Sphingomonas SP}
Probab=20.14 E-value=64 Score=24.63 Aligned_cols=40 Identities=13% Similarity=0.022 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHhCCchHHhhccCCCCCHHHHHHHHHHhhcc
Q 042846 74 EEDTIIRLRQQHGNKWSLIAAKLPGRTDNEIKNYWHTHLKK 114 (243)
Q Consensus 74 ED~~Ll~lv~~~G~~Ws~Ia~~lpgRT~~q~knrw~~~lkk 114 (243)
++..++.+....|-.-.+||..| |-+...|+++-...+++
T Consensus 97 ~~r~vl~L~~~~g~s~~EIA~~l-gis~~tV~~~l~rar~~ 136 (157)
T 2lfw_A 97 LSRQALLLTAMEGFSPEDAAYLI-EVDTSEVETLVTEALAE 136 (157)
T ss_dssp THHHHHTTTSSSCCCHHHHHHTT-TSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 34445555555677899999999 89999999998765543
Done!