BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042848
(339 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2XR7|A Chain A, Crystal Structure Of Nicotiana Tabacum Malonyltransferase
(Ntmat1) Complexed With Malonyl-Coa
Length = 453
Score = 137 bits (346), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 107/331 (32%), Positives = 155/331 (46%), Gaps = 39/331 (11%)
Query: 20 EACKVPPFSDDSXXXXXXXXXLPLTYFDTYCFNLSPVDILLFYEIKDLTWDSFNSEILPK 79
E C+V P + LPLTYFD +LFY++ ++ F I+P
Sbjct: 6 EQCQVVPSPGSATELT-----LPLTYFDHVWLAFHRXRRILFYKLP-ISRPDFVQTIIPT 59
Query: 80 LKHSLSITLLHYLPVAGHLMWPPD-AEKPAVYYFKDDGVSVTVAESNADLRRLLSSNNGT 138
LK SLS+TL +YLP+AG++ P D + P + Y + VSV +ES+ D L+ +
Sbjct: 60 LKDSLSLTLKYYLPLAGNVACPQDWSGYPELRYVTGNSVSVIFSESDXDFNYLIGYH--P 117
Query: 139 RRAVEFHPLAPRLSISEDK-----AEVTAIQITLFPNQGFSICISVHHTVIDGKSAVLFI 193
R +F+ P+L+ +D A V AIQ+TLFPN G SI + HH DG + V F+
Sbjct: 118 RNTKDFYHFVPQLAEPKDAPGVQLAPVLAIQVTLFPNHGISIGFTNHHVAGDGATIVKFV 177
Query: 194 KSWAYLCKKXXXXXXXXXXXXXXXESLTPCFDRSLIKDPHGIDMVYVKQLMAFTGSDPNT 253
++WA L K P +DRS+IKDP+G+ + +
Sbjct: 178 RAWALLNK-------FGGDEQFLANEFIPFYDRSVIKDPNGVGXSIWNEXKKYKHX---X 227
Query: 254 RSLKVTIPVAKVDSNLVRKTFTLTREDXXXXXXXXXXXXXDQHPSKQLHSSTFVLTCAHV 313
+ V P K VR TF +TR D + P K H ++F +TCA+V
Sbjct: 228 KXSDVVTPPDK-----VRGTFIITRHDIGKLKNLVLT----RRP-KLTHVTSFTVTCAYV 277
Query: 314 FVCLVK---ARGE--DANTTVTFWVPADCRS 339
+ C++K A GE D N F ADCR+
Sbjct: 278 WTCIIKSEAATGEEIDENGXEFFGCAADCRA 308
>pdb|2E1V|A Chain A, Crystal Structure Of Dendranthema Morifolium Dmat, Seleno-
Methionine Derivative
pdb|2E1V|B Chain B, Crystal Structure Of Dendranthema Morifolium Dmat, Seleno-
Methionine Derivative
Length = 454
Score = 125 bits (313), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 96/306 (31%), Positives = 148/306 (48%), Gaps = 33/306 (10%)
Query: 41 LPLTYFDTYCFNLSPVDILLFYEIKDLTWDSFNSEILPKLKHSLSITLLHYLPVAGHLM- 99
L LT+FD + P++ L FYE+ +T F ++P +KHSLSITL H+ P G L+
Sbjct: 27 LQLTFFDFFWLRSPPINNLFFYELP-ITRSQFTETVVPNIKHSLSITLKHFYPFVGKLVV 85
Query: 100 WPPDAEKPAVYYFKDDGVSVTVAESNADLRRLLSSNNGTRRAVEFHPLAPRLSISED--- 156
+P +KP + Y + D V+VT AE N DL L + N R +F+ L P L S
Sbjct: 86 YPAPTKKPEICYVEGDSVAVTFAECNLDLNEL--TGNHPRNCDKFYDLVPILGESTRLSD 143
Query: 157 --KAEVTAIQITLFPNQGFSICISVHHTVIDGKSAVLFIKSWAYLCKKXXXXXXXXXXXX 214
K + ++Q+TLFPNQG +I I+ HH + D + F+K+W + +
Sbjct: 144 CIKIPLFSVQVTLFPNQGIAIGITNHHCLGDASTRFCFLKAWTSIARS------GNNDES 197
Query: 215 XXXESLTPCFDRSLIKDPHGIDMVYVKQLMAFT-GSDPNTRSLKVTIPVAKVDSNLVRKT 273
P +DR +IK P +D Y+K+ + D T+SL S+ +R T
Sbjct: 198 FLANGTRPLYDR-IIKYPX-LDEAYLKRAKVESFNEDYVTQSLAGP-------SDKLRAT 248
Query: 274 FTLTREDXXXXXXXXXXXXXDQHPSKQLHSSTFVLTCAHVFVCLVKARGEDANTTVTFWV 333
F LTR Q P+ + + S+F + CA+++ C+ K+R + F
Sbjct: 249 FILTR----AVINQLKDRVLAQLPTLE-YVSSFTVACAYIWSCIAKSRNDKLQ---LFGF 300
Query: 334 PADCRS 339
P D R+
Sbjct: 301 PIDRRA 306
>pdb|2E1T|A Chain A, Crystal Structure Of Dendranthema Morifolium Dmat
Complexed With Malonyl-coa
pdb|2E1T|B Chain B, Crystal Structure Of Dendranthema Morifolium Dmat
Complexed With Malonyl-coa
pdb|2E1U|A Chain A, Crystal Structure Of Dendranthema Morifolium Dmat
pdb|2E1U|B Chain B, Crystal Structure Of Dendranthema Morifolium Dmat
Length = 454
Score = 125 bits (313), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 96/306 (31%), Positives = 148/306 (48%), Gaps = 33/306 (10%)
Query: 41 LPLTYFDTYCFNLSPVDILLFYEIKDLTWDSFNSEILPKLKHSLSITLLHYLPVAGHLM- 99
L LT+FD + P++ L FYE+ +T F ++P +KHSLSITL H+ P G L+
Sbjct: 27 LQLTFFDFFWLRSPPINNLFFYELP-ITRSQFTETVVPNIKHSLSITLKHFYPFVGKLVV 85
Query: 100 WPPDAEKPAVYYFKDDGVSVTVAESNADLRRLLSSNNGTRRAVEFHPLAPRLSISED--- 156
+P +KP + Y + D V+VT AE N DL L + N R +F+ L P L S
Sbjct: 86 YPAPTKKPEICYVEGDSVAVTFAECNLDLNEL--TGNHPRNCDKFYDLVPILGESTRLSD 143
Query: 157 --KAEVTAIQITLFPNQGFSICISVHHTVIDGKSAVLFIKSWAYLCKKXXXXXXXXXXXX 214
K + ++Q+TLFPNQG +I I+ HH + D + F+K+W + +
Sbjct: 144 CIKIPLFSVQVTLFPNQGIAIGITNHHCLGDASTRFCFLKAWTSIARS------GNNDES 197
Query: 215 XXXESLTPCFDRSLIKDPHGIDMVYVKQLMAFT-GSDPNTRSLKVTIPVAKVDSNLVRKT 273
P +DR +IK P +D Y+K+ + D T+SL S+ +R T
Sbjct: 198 FLANGTRPLYDR-IIKYPM-LDEAYLKRAKVESFNEDYVTQSLAGP-------SDKLRAT 248
Query: 274 FTLTREDXXXXXXXXXXXXXDQHPSKQLHSSTFVLTCAHVFVCLVKARGEDANTTVTFWV 333
F LTR Q P+ + + S+F + CA+++ C+ K+R + F
Sbjct: 249 FILTR----AVINQLKDRVLAQLPTLE-YVSSFTVACAYIWSCIAKSRNDKLQ---LFGF 300
Query: 334 PADCRS 339
P D R+
Sbjct: 301 PIDRRA 306
>pdb|4G0B|A Chain A, Structure Of Native Hct From Coffea Canephora
pdb|4G0B|B Chain B, Structure Of Native Hct From Coffea Canephora
Length = 436
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 60/266 (22%), Positives = 104/266 (39%), Gaps = 39/266 (14%)
Query: 80 LKHSLSITLLHYLPVAGHLMWPPDAEKPAVYYFKDDGVSVTVAESNADLRRLLSSNNGTR 139
LK +LS L+ + P+AG L D + +G V E+ +D ++
Sbjct: 58 LKDALSRALVPFYPMAGRLKRDEDGR----IEIECNGEGVLFVEAESD--GVVDDFGDFA 111
Query: 140 RAVEFHPLAPRLSISEDKAE--VTAIQITLFPNQGFSICISVHHTVIDGKSAVLFIKSWA 197
+E L P + S+ + + +Q+T F G S+ + + H DG S + FI SW+
Sbjct: 112 PTLELRRLIPAVDYSQGISSYALLVLQVTYFKCGGVSLGVGMRHHAADGFSGLHFINSWS 171
Query: 198 YLCKKXXXXXXXXXXXXXXXESLTPCFDRSLI--KDPHGIDMVYVKQLMAFTGSDPNTRS 255
+ + +L P DR+L+ +DP +++ +
Sbjct: 172 DMARGLDV-------------TLPPFIDRTLLRARDPPQPQFQHIEYQ--------PPPA 210
Query: 256 LKVTIPVAKVDS--NLVRKTFTLTREDXXXXXXXXXXXXXDQHPSKQLHSSTFVLTCAHV 313
LKV+ AK DS F LTRE + + S++ + HV
Sbjct: 211 LKVSPQTAKSDSVPETAVSIFKLTREQ------ISALKAKSKEDGNTISYSSYEMLAGHV 264
Query: 314 FVCLVKARGEDANTTVTFWVPADCRS 339
+ C KARG + + ++ D R+
Sbjct: 265 WRCACKARGLEVDQGTKLYIATDGRA 290
>pdb|4G22|A Chain A, Structure Of A Lys-Hct Mutant From Coffea Canephora
(Crystal Form 1)
pdb|4G22|B Chain B, Structure Of A Lys-Hct Mutant From Coffea Canephora
(Crystal Form 1)
Length = 439
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 59/266 (22%), Positives = 103/266 (38%), Gaps = 39/266 (14%)
Query: 80 LKHSLSITLLHYLPVAGHLMWPPDAEKPAVYYFKDDGVSVTVAESNADLRRLLSSNNGTR 139
LK +LS L+ + P+AG L D + +G V E+ +D ++
Sbjct: 61 LKDALSRALVPFYPMAGRLKRDEDGR----IEIECNGEGVLFVEAESD--GVVDDFGDFA 114
Query: 140 RAVEFHPLAPRLSISEDKAE--VTAIQITLFPNQGFSICISVHHTVIDGKSAVLFIKSWA 197
+E L P + S+ + + +Q+T F G S+ + + H DG S + FI SW+
Sbjct: 115 PTLELRRLIPAVDYSQGISSYALLVLQVTYFKXGGVSLGVGMRHHAADGFSGLHFINSWS 174
Query: 198 YLCKKXXXXXXXXXXXXXXXESLTPCFDRSLI--KDPHGIDMVYVKQLMAFTGSDPNTRS 255
+ + +L P DR+L+ +DP +++ P +
Sbjct: 175 DMARGLDV-------------TLPPFIDRTLLRARDPPQPQFQHIEY-------QPPP-A 213
Query: 256 LKVTIPVAKVDS--NLVRKTFTLTREDXXXXXXXXXXXXXDQHPSKQLHSSTFVLTCAHV 313
L V+ A DS F LTRE + + S++ + HV
Sbjct: 214 LAVSPQTAASDSVPETAVSIFKLTREQ------ISALKAKSKEDGNTISYSSYEMLAGHV 267
Query: 314 FVCLVKARGEDANTTVTFWVPADCRS 339
+ C KARG + + ++ D R+
Sbjct: 268 WRCACKARGLEVDQGTKLYIATDGRA 293
>pdb|4G2M|A Chain A, Structure Of A Lys-Hct Mutant From Coffea Canephora
(Crystal Form 2)
Length = 439
Score = 51.2 bits (121), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 58/266 (21%), Positives = 102/266 (38%), Gaps = 39/266 (14%)
Query: 80 LKHSLSITLLHYLPVAGHLMWPPDAEKPAVYYFKDDGVSVTVAESNADLRRLLSSNNGTR 139
LK +LS L+ + P+AG L D + +G V E+ +D ++
Sbjct: 61 LKDALSRALVPFYPMAGRLKRDEDGR----IEIECNGEGVLFVEAESD--GVVDDFGDFA 114
Query: 140 RAVEFHPLAPRLSISEDKAE--VTAIQITLFPNQGFSICISVHHTVIDGKSAVLFIKSWA 197
+E L P + S+ + + +Q+T F G S+ + + H DG S + FI SW+
Sbjct: 115 PTLELRRLIPAVDYSQGISSYALLVLQVTYFKCGGVSLGVGMRHHAADGFSGLHFINSWS 174
Query: 198 YLCKKXXXXXXXXXXXXXXXESLTPCFDRSLI--KDPHGIDMVYVKQLMAFTGSDPNTRS 255
+ + +L P DR+L+ +DP +++ +
Sbjct: 175 DMARGLDV-------------TLPPFIDRTLLRARDPPQPQFQHIEY--------QPPPA 213
Query: 256 LKVTIPVAKVDS--NLVRKTFTLTREDXXXXXXXXXXXXXDQHPSKQLHSSTFVLTCAHV 313
L V+ A DS F LTRE + + S++ + HV
Sbjct: 214 LAVSPQTAASDSVPETAVSIFKLTREQ------ISALKAKSKEDGNTISYSSYEMLAGHV 267
Query: 314 FVCLVKARGEDANTTVTFWVPADCRS 339
+ C KARG + + ++ D R+
Sbjct: 268 WRCACKARGLEVDQGTKLYIATDGRA 293
>pdb|2BGH|A Chain A, Crystal Structure Of Vinorine Synthase
pdb|2BGH|B Chain B, Crystal Structure Of Vinorine Synthase
Length = 421
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/126 (24%), Positives = 56/126 (44%), Gaps = 12/126 (9%)
Query: 80 LKHSLSITLLHYLPVAGHLMWPPDAEKPAVYYFKDDGVSVTVAESNADLRRLLSSNNGTR 139
LK SLS L H+ P+AG + + D GV A A L + + +
Sbjct: 63 LKQSLSKVLTHFYPLAGRINVNSSVD------CNDSGVPFVEARVQAQLSQAIQNVVELE 116
Query: 140 RAVEFHPLAP----RLSISEDKAEVTAIQITLFPNQGFSICISVHHTVIDGKSAVLFIKS 195
+ ++ P A ++ ++ED A++I+ F G +I +++ H + D S F+ +
Sbjct: 117 KLDQYLPSAAYPGGKIEVNEDVP--LAVKISFFECGGTAIGVNLSHKIADVLSLATFLNA 174
Query: 196 WAYLCK 201
W C+
Sbjct: 175 WTATCR 180
>pdb|3RT2|A Chain A, Crystal Structure Of Apo-Pyl10
Length = 183
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 49/122 (40%), Gaps = 20/122 (16%)
Query: 85 SITLLHYLPVAGHLMW-------PPDAEKPAVYYFKDDGVSVTVAE-SNADLRRLLSSNN 136
S TL+ ++ HL+W P KP + G + V DL+ L +
Sbjct: 28 SSTLVKHIKAPLHLVWSIVRRFDEPQKYKPFISRCVVQGKKLEVGSVREVDLKSGLPATK 87
Query: 137 GTRRAVEFHPLAPRLSISEDKAEVTAIQITLFPN--QGFSICISVHHTVIDGKSAVLFIK 194
T L I +D + I+I + + +S IS+H IDGK+ L I+
Sbjct: 88 STEV----------LEILDDNEHILGIRIVGGDHRLKNYSSTISLHSETIDGKTGTLAIE 137
Query: 195 SW 196
S+
Sbjct: 138 SF 139
>pdb|3UQH|A Chain A, Crystal Strcuture Of Aba Receptor Pyl10 (Apo)
pdb|3UQH|B Chain B, Crystal Strcuture Of Aba Receptor Pyl10 (Apo)
pdb|3R6P|A Chain A, Crystal Structure Of Abscisic Acid-Bound Pyl10
Length = 191
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 49/122 (40%), Gaps = 20/122 (16%)
Query: 85 SITLLHYLPVAGHLMW-------PPDAEKPAVYYFKDDGVSVTVAE-SNADLRRLLSSNN 136
S TL+ ++ HL+W P KP + G + V DL+ L +
Sbjct: 28 SSTLVKHIKAPLHLVWSIVRRFDEPQKYKPFISRCVVQGKKLEVGSVREVDLKSGLPATK 87
Query: 137 GTRRAVEFHPLAPRLSISEDKAEVTAIQITLFPN--QGFSICISVHHTVIDGKSAVLFIK 194
T L I +D + I+I + + +S IS+H IDGK+ L I+
Sbjct: 88 STEV----------LEILDDNEHILGIRIVGGDHRLKNYSSTISLHSETIDGKTGTLAIE 137
Query: 195 SW 196
S+
Sbjct: 138 SF 139
>pdb|3RT0|C Chain C, Crystal Structure Of Pyl10-Hab1 Complex In The Absence Of
Abscisic Acid (Aba)
pdb|3RT0|D Chain D, Crystal Structure Of Pyl10-Hab1 Complex In The Absence Of
Abscisic Acid (Aba)
Length = 183
Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 49/122 (40%), Gaps = 20/122 (16%)
Query: 85 SITLLHYLPVAGHLMW-------PPDAEKPAVYYFKDDGVSVTVAE-SNADLRRLLSSNN 136
S TL+ ++ HL+W P KP + G + V DL+ L +
Sbjct: 28 SSTLVKHIKAPLHLVWSIVRRFDEPQKYKPFISRCVVQGKKLEVGSVREVDLKSGLPATK 87
Query: 137 GTRRAVEFHPLAPRLSISEDKAEVTAIQITLFPN--QGFSICISVHHTVIDGKSAVLFIK 194
T L I +D + I+I + + +S IS+H IDGK+ L I+
Sbjct: 88 STEV----------LEILDDNEHILGIRIVGGDHRLKNYSSTISLHSETIDGKTGTLAIE 137
Query: 195 SW 196
S+
Sbjct: 138 SF 139
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,076,876
Number of Sequences: 62578
Number of extensions: 318520
Number of successful extensions: 515
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 492
Number of HSP's gapped (non-prelim): 11
length of query: 339
length of database: 14,973,337
effective HSP length: 99
effective length of query: 240
effective length of database: 8,778,115
effective search space: 2106747600
effective search space used: 2106747600
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)