Query 042848
Match_columns 339
No_of_seqs 171 out of 1167
Neff 8.6
Searched_HMMs 29240
Date Mon Mar 25 17:48:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042848.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042848hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4g22_A Hydroxycinnamoyl-COA sh 100.0 3.3E-55 1.1E-59 425.6 31.4 285 12-339 4-293 (439)
2 2xr7_A Malonyltransferase; xen 100.0 2.5E-53 8.5E-58 414.1 25.8 296 15-339 1-308 (453)
3 2e1v_A Acyl transferase; BAHD 100.0 2.7E-52 9.3E-57 406.8 29.3 297 12-339 3-306 (454)
4 2bgh_A Vinorine synthase; VS, 100.0 1.8E-49 6.1E-54 383.3 29.3 269 14-339 3-280 (421)
5 2rkv_A Trichothecene 3-O-acety 100.0 4.4E-42 1.5E-46 334.5 22.6 267 40-339 4-297 (451)
6 1q9j_A PAPA5, polyketide synth 98.6 1.3E-06 4.5E-11 82.7 18.3 254 38-339 5-270 (422)
7 2jgp_A Tyrocidine synthetase 3 98.2 0.00034 1.2E-08 68.1 23.2 218 77-339 133-360 (520)
8 4hvm_A Tlmii; PSI-biology, mid 98.1 2.6E-05 9E-10 75.6 13.1 243 38-338 11-284 (493)
9 1l5a_A Amide synthase, VIBH; n 98.1 0.00028 9.7E-09 66.9 19.8 215 77-339 35-264 (436)
10 2xhg_A Tyrocidine synthetase A 98.0 0.0024 8.3E-08 60.9 24.4 258 38-339 15-291 (466)
11 2vsq_A Surfactin synthetase su 97.9 0.0019 6.4E-08 70.2 23.1 224 77-339 49-285 (1304)
12 3fot_A 15-O-acetyltransferase; 97.3 0.07 2.4E-06 52.0 23.5 238 74-339 72-343 (519)
13 3cla_A Type III chloramphenico 82.8 1.2 4.1E-05 37.9 4.4 45 157-201 163-209 (213)
14 2i9d_A Chloramphenicol acetylt 82.1 1.3 4.5E-05 37.8 4.4 44 157-200 171-216 (217)
15 1q23_A Chloramphenicol acetylt 81.6 1.4 4.8E-05 37.6 4.4 44 158-201 168-213 (219)
16 2kl8_A OR15; structural genomi 79.8 1.2 4.2E-05 29.8 2.6 37 76-112 11-47 (85)
17 1dpb_A Dihydrolipoyl-transacet 79.4 1.8 6.1E-05 37.6 4.4 29 173-201 208-236 (243)
18 3rqc_A Probable lipoamide acyl 79.4 1.5 5.3E-05 37.5 3.9 29 173-201 187-215 (224)
19 1scz_A E2, dihydrolipoamide su 79.3 1.8 6.3E-05 37.3 4.4 29 173-201 196-224 (233)
20 3b8k_A PDCE2;, dihydrolipoylly 79.0 1.6 5.6E-05 37.7 4.0 29 173-201 204-232 (239)
21 2ii3_A Lipoamide acyltransfera 78.4 2 6.8E-05 37.8 4.4 29 173-201 224-252 (262)
22 4hhu_A OR280; engineered prote 75.3 2.9 0.0001 31.6 3.8 36 77-112 94-129 (170)
23 3mae_A 2-oxoisovalerate dehydr 74.3 3 0.0001 36.4 4.4 29 173-201 210-238 (256)
24 3l60_A Branched-chain alpha-ke 73.2 3.3 0.00011 36.0 4.4 29 173-201 205-233 (250)
25 4hhu_A OR280; engineered prote 73.2 2.9 0.0001 31.6 3.4 36 77-112 13-48 (170)
26 2xl1_A Arginine attenuator pep 54.6 11 0.00037 19.6 2.3 19 301-319 6-24 (26)
27 3dva_I Dihydrolipoyllysine-res 51.6 3.1 0.00011 39.3 0.0 29 173-201 391-419 (428)
28 1x93_A Hypothetical protein HP 50.1 29 0.001 21.7 4.2 23 271-293 3-25 (55)
29 2k1o_A Putative; repressor, tr 35.2 91 0.0031 20.2 5.1 42 268-323 14-55 (66)
30 2xt6_A 2-oxoglutarate decarbox 30.7 34 0.0012 36.3 3.9 29 173-201 192-220 (1113)
No 1
>4g22_A Hydroxycinnamoyl-COA shikimate/quinate hydroxycinnamoyltransferase; BAHD superfamily; 1.70A {Coffea canephora} PDB: 4g2m_A 4g0b_A
Probab=100.00 E-value=3.3e-55 Score=425.61 Aligned_cols=285 Identities=24% Similarity=0.346 Sum_probs=225.8
Q ss_pred CCcceEEEEeEeecCCCCCchhhcccCccccCCcccccccccCcccEEEEEecCCCCCCcchhhHHHHHHHHHHHhhhhc
Q 042848 12 NNRLVKIHEACKVPPFSDDSTAAAVAATTLPLTYFDTYCFNLSPVDILLFYEIKDLTWDSFNSEILPKLKHSLSITLLHY 91 (339)
Q Consensus 12 ~~~~V~v~~~~~V~P~~~~~~~~~~~~~~~~LS~lD~~~~~~~y~~~~~~f~~~~~~~~~~~~~~~~~L~~sL~~~L~~~ 91 (339)
..|+|+|.++++|+|+.|+| .+.++||+||+.+.. .|++.+|||+.+. .. . ...+++||+||+++|++|
T Consensus 4 ~~~~V~i~~~~~V~P~~~tp------~~~~~LS~lD~~~~~-~~~~~~~~y~~~~-~~-~--~~~~~~Lk~sLs~~L~~f 72 (439)
T 4g22_A 4 GSMKIEVKESTMVRPAQETP------GRNLWNSNVDLVVPN-FHTPSVYFYRPTG-SS-N--FFDAKVLKDALSRALVPF 72 (439)
T ss_dssp --CCEEEEEEEEECCSSCCC------CCEECCCHHHHSCCT-TCCCEEEEECCCS-CT-T--TTCHHHHHHHHHHHTTTT
T ss_pred CceEEEEeeeEEEeCCCCCC------CCeecCChhHhCccc-cceeeEEEEcCCC-Cc-c--ccHHHHHHHHHHHHHhhc
Confidence 35899999999999999987 788999999998655 4999999998754 32 1 246899999999999999
Q ss_pred cccCcEEeCCCCCCCceEEeeCCCceEEEEEEeccchhhhhcCCCCCCccccccCCCCCCCCCC--CCCcEEEEEEEEec
Q 042848 92 LPVAGHLMWPPDAEKPAVYYFKDDGVSVTVAESNADLRRLLSSNNGTRRAVEFHPLAPRLSISE--DKAEVTAIQITLFP 169 (339)
Q Consensus 92 p~LaGrl~~~~~~g~~~i~~~~~~gv~f~~a~~d~~~~~l~~~~~~p~~~~~~~~l~p~~~~~~--~~~Pll~vQvt~f~ 169 (339)
|||||||+.+++ |+++|+|+ ++||.|+||++|.+++|+.. .. +...+++|+|..+... .+.|++.||||+|+
T Consensus 73 ~plAGRl~~~~~-g~~~i~c~-~~Gv~fv~A~~d~~l~~l~~--~~--p~~~~~~l~p~~~~~~~~~~~pll~vQvT~f~ 146 (439)
T 4g22_A 73 YPMAGRLKRDED-GRIEIECN-GEGVLFVEAESDGVVDDFGD--FA--PTLELRRLIPAVDYSQGISSYALLVLQVTYFK 146 (439)
T ss_dssp GGGGCEEEECTT-SCEEEECC-CCCEEEEEEEESSCGGGGTT--CC--CCGGGGGGSCCCCTTSCTTSSCSEEEEEEECT
T ss_pred cccceeeeeCCC-CCEEEEEC-CCCCEEEEEEcCCcHHHhcC--CC--CCHHHHhcCCCCCcccccccCceeEEEEEEec
Confidence 999999998876 89999996 99999999999999999943 22 3345677888765432 47899999999999
Q ss_pred CCeEEEEEeeeccccchHHHHHHHHHHHHHHHhhhccCCcCCCCCCCCCCCCCcccccccc--CCCCCchHHHHHHhhhc
Q 042848 170 NQGFSICISVHHTVIDGKSAVLFIKSWAYLCKKLQQQNVVVPVPSLLPESLTPCFDRSLIK--DPHGIDMVYVKQLMAFT 247 (339)
Q Consensus 170 ~GG~~L~~~~~H~v~Dg~g~~~fl~~Wa~~~r~~~G~~~~~~~~~~l~~~~~P~~dr~~l~--~p~~~~~~~~~~~~~~~ 247 (339)
|||++||+++||.++||.|+++|+++||++|| |.. . +..|++||+.+. +|+.....+ .+|.+.+
T Consensus 147 cGG~~lg~~~~H~v~Dg~~~~~Fl~~wa~~~r---g~~--------~--~~~P~~dr~~l~~~~pp~~~~~~-~~~~~~~ 212 (439)
T 4g22_A 147 CGGVSLGVGMRHHAADGFSGLHFINSWSDMAR---GLD--------V--TLPPFIDRTLLRARDPPQPQFQH-IEYQPPP 212 (439)
T ss_dssp TSCEEEEEEECTTTCCHHHHHHHHHHHHHHHT---TCC--------C--SSCCBCCGGGGCCCSSCCCSSCC-GGGSCCC
T ss_pred CCCEEEEEEeeeccCcHHHHHHHHHHHHHHhC---CCC--------C--CCCCccccccccCCCCCCCCcCc-ccccCCC
Confidence 99999999999999999999999999999999 844 1 357999999886 344332211 2332211
Q ss_pred CCCCCCCCcccccCCCcCC-CceEEEEEEeCHHHHHHHHHHhhhhcccCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCC
Q 042848 248 GSDPNTRSLKVTIPVAKVD-SNLVRKTFTLTREDLNKLKHKLVLVNKDQHPSKQLHSSTFVLTCAHVFVCLVKARGEDAN 326 (339)
Q Consensus 248 ~~~~~~~~~~~~~p~~~~~-~~~~~~~f~fs~~~l~~LK~~a~~~~~~~~~~~~~~~St~dal~A~iW~~i~rAr~~~~~ 326 (339)
.. ... .. +....+ .++++++|+|++++|++||+.+..+. +..++||||+|+||+|||++|||+++++
T Consensus 213 ~~---~~~-~~--~~~~~~~~~~~~~~f~fs~~~i~~LK~~a~~~~------~~~~~St~dal~A~iWr~~~rAr~~~~~ 280 (439)
T 4g22_A 213 AL---AVS-PQ--TAASDSVPETAVSIFKLTREQISALKAKSKEDG------NTISYSSYEMLAGHVWRCACKARGLEVD 280 (439)
T ss_dssp ---------------------CEEEEEEEECHHHHHHHHHGGGGGG------CCCCCCHHHHHHHHHHHHHHHHTTCCTT
T ss_pred CC---ccc-cc--ccccCCcccceEEEEEECHHHHHHHHHHhhccC------CCCCccHHHHHHHHHHHHHHHhcCCCCC
Confidence 00 000 00 000011 46889999999999999999998654 2357999999999999999999998888
Q ss_pred CeEEEEEeeccCC
Q 042848 327 TTVTFWVPADCRS 339 (339)
Q Consensus 327 ~~~~l~~avd~R~ 339 (339)
+.+++.++||+|+
T Consensus 281 ~~~~l~~~vd~R~ 293 (439)
T 4g22_A 281 QGTKLYIATDGRA 293 (439)
T ss_dssp CEEEEEEEEECTT
T ss_pred CcEEEEEEEcccC
Confidence 9999999999996
No 2
>2xr7_A Malonyltransferase; xenobiotics, naphthols; HET: MLC; 3.10A {Nicotiana tabacum}
Probab=100.00 E-value=2.5e-53 Score=414.08 Aligned_cols=296 Identities=36% Similarity=0.640 Sum_probs=227.3
Q ss_pred ceEEEEeEeecCCCCCchhhcccCccccCCcccccccccCcccEEEEEecCCCCCCcchhhHHHHHHHHHHHhhhhcccc
Q 042848 15 LVKIHEACKVPPFSDDSTAAAVAATTLPLTYFDTYCFNLSPVDILLFYEIKDLTWDSFNSEILPKLKHSLSITLLHYLPV 94 (339)
Q Consensus 15 ~V~v~~~~~V~P~~~~~~~~~~~~~~~~LS~lD~~~~~~~y~~~~~~f~~~~~~~~~~~~~~~~~L~~sL~~~L~~~p~L 94 (339)
+|+|.++++|+|+.++++ .+.++||+||+.+.+++|++.+|||+.+. ...+|.++++++||+||+++|++||||
T Consensus 1 ~v~v~~~~~V~P~~~~~~-----~~~~~LS~lD~~~~~~~~~~~~~~y~~~~-~~~~~~~~~~~~Lk~sLs~~L~~~~pl 74 (453)
T 2xr7_A 1 MASVIEQCQVVPSPGSAT-----ELTLPLTYFDHVWLAFHRMRRILFYKLPI-SRPDFVQTIIPTLKDSLSLTLKYYLPL 74 (453)
T ss_dssp -CEEEEESCCCCCTTCCS-----EEEEECCHHHHGGGGSCCEEEEEEEECCC-CSHHHHHTHHHHHHHHHHHHHTTSGGG
T ss_pred CeEEEEEEEecCCCCCCC-----CceECCCHHHhhhhhcCCccEEEEEeCCC-CCchhHHHHHHHHHHHHHHHhhhcccc
Confidence 389999999999987542 78999999999866666999999999754 322234568999999999999999999
Q ss_pred CcEEeCCCC-CCCceEEeeCCCceEEEEEEeccchhhhhcCCCCCCccccccCCCCCCCCCCCC-----CcEEEEEEEEe
Q 042848 95 AGHLMWPPD-AEKPAVYYFKDDGVSVTVAESNADLRRLLSSNNGTRRAVEFHPLAPRLSISEDK-----AEVTAIQITLF 168 (339)
Q Consensus 95 aGrl~~~~~-~g~~~i~~~~~~gv~f~~a~~d~~~~~l~~~~~~p~~~~~~~~l~p~~~~~~~~-----~Pll~vQvt~f 168 (339)
||||+.+++ +|+++|+|++++||.|++|+++.+++++.. ..+.+...+..|+|..+..... .|++.||||+|
T Consensus 75 AGRl~~~~~~~g~~~i~c~~~~gv~fv~A~~~~~l~~l~~--~~~~~~~~~~~l~p~~~~~~~~~~~~~~pll~vQvT~f 152 (453)
T 2xr7_A 75 AGNVACPQDWSGYPELRYVTGNSVSVIFSESDMDFNYLIG--YHPRNTKDFYHFVPQLAEPKDAPGVQLAPVLAIQVTLF 152 (453)
T ss_dssp GSCCEEESSTTCCCEEEEETTCCCEEEEEECCSCHHHHTC--SSCCCGGGGGGGSCCCCCCEEETTEEECCCEEEEEEEE
T ss_pred CeeEEccCCCCCCEEEEecCCCceEEEEEecCCCHHHhhc--cCCCChhhhhcCCCCCCCcccccccccCCeEEEEEEEc
Confidence 999998652 489999997458999999999999999965 3333455667788876533223 89999999999
Q ss_pred cCCeEEEEEeeeccccchHHHHHHHHHHHHHHHhhhccCCcCCCCCCCCCCCCCccccccccCCCCCchHHHHHHhhhcC
Q 042848 169 PNQGFSICISVHHTVIDGKSAVLFIKSWAYLCKKLQQQNVVVPVPSLLPESLTPCFDRSLIKDPHGIDMVYVKQLMAFTG 248 (339)
Q Consensus 169 ~~GG~~L~~~~~H~v~Dg~g~~~fl~~Wa~~~r~~~G~~~~~~~~~~l~~~~~P~~dr~~l~~p~~~~~~~~~~~~~~~~ 248 (339)
+|||++||+++||.++||.|+++|+++||++||. |.. +...++.+.|++||+.+.+|+.+...+...+...
T Consensus 153 ~cGG~~lg~~~~H~v~Dg~~~~~Fl~~wa~~~r~--G~~-----~~~~~~~~~P~~dr~~l~~p~~~~~~~~~~~~~~-- 223 (453)
T 2xr7_A 153 PNHGISIGFTNHHVAGDGATIVKFVRAWALLNKF--GGD-----EQFLANEFIPFYDRSVIKDPNGVGMSIWNEMKKY-- 223 (453)
T ss_dssp TTTEEEEEEEECTTTCCSHHHHHHHHHHHHHHHT--TTC-----GGGSCGGGSCBCCCSSSCCSSCHHHHTTTTGGGC--
T ss_pred cCCcEEEEEeeeeeeechhHHHHHHHHHHHHhhc--CCC-----cccCCCCCCCccccccccCCCCcchHHHHhcccc--
Confidence 9999999999999999999999999999999992 321 0011224568999998876654321111111000
Q ss_pred CCCCCCCc-ccccCCCcCCCceEEEEEEeCHHHHHHHHHHhhhhcccCCCCCCCCCCHHHHHHHHHHHHHHHhcCC----
Q 042848 249 SDPNTRSL-KVTIPVAKVDSNLVRKTFTLTREDLNKLKHKLVLVNKDQHPSKQLHSSTFVLTCAHVFVCLVKARGE---- 323 (339)
Q Consensus 249 ~~~~~~~~-~~~~p~~~~~~~~~~~~f~fs~~~l~~LK~~a~~~~~~~~~~~~~~~St~dal~A~iW~~i~rAr~~---- 323 (339)
..+ +. .....+.+++.++|+|++++|++||+.+..... +..++|+||+|+||+|||++|||..
T Consensus 224 -----~~~~~~--~~~~~~~~~~~~~f~f~~~~i~~Lk~~a~~~~~-----~~~~~St~~~l~A~lW~~~~~Ar~~~~~~ 291 (453)
T 2xr7_A 224 -----KHMMKM--SDVVTPPDKVRGTFIITRHDIGKLKNLVLTRRP-----KLTHVTSFTVTCAYVWTCIIKSEAATGEE 291 (453)
T ss_dssp -----TTTSCC--SCCCCCCSCCCEEEEECHHHHHHHHHHHHHHSC-----CCSCCCHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred -----CCcccc--ccccCCCCceEEEEEECHHHHHHHHHHHhhcCC-----CCCcccHHHHHHHHHHHHHHHHhcccccc
Confidence 010 00 000023456789999999999999999986542 1258999999999999999999975
Q ss_pred -CCCCeEEEEEeeccCC
Q 042848 324 -DANTTVTFWVPADCRS 339 (339)
Q Consensus 324 -~~~~~~~l~~avd~R~ 339 (339)
++++.+++.++||+|+
T Consensus 292 ~~~~~~~~l~~~vd~R~ 308 (453)
T 2xr7_A 292 IDENGMEFFGCAADCRA 308 (453)
T ss_dssp CCTTSEEEEEEECCTTS
T ss_pred CCCCcceEEEEEecccc
Confidence 5778999999999996
No 3
>2e1v_A Acyl transferase; BAHD superfamily, seleno-methionine derivative, dendranthema morifolium, DMAT; 1.80A {Chrysanthemum x morifolium} PDB: 2e1u_A 2e1t_A
Probab=100.00 E-value=2.7e-52 Score=406.82 Aligned_cols=297 Identities=35% Similarity=0.582 Sum_probs=222.5
Q ss_pred CCcceEEEEeEeecCCCCCchhhcccCccccCCcccccccccCcccEEEEEecCCCCCCcchhhHHHHHHHHHHHhhhhc
Q 042848 12 NNRLVKIHEACKVPPFSDDSTAAAVAATTLPLTYFDTYCFNLSPVDILLFYEIKDLTWDSFNSEILPKLKHSLSITLLHY 91 (339)
Q Consensus 12 ~~~~V~v~~~~~V~P~~~~~~~~~~~~~~~~LS~lD~~~~~~~y~~~~~~f~~~~~~~~~~~~~~~~~L~~sL~~~L~~~ 91 (339)
+.++|+|.++++|+|+.|+++ .+.++||+||+.+..++|++.+|||+.+. ...+|.++++++||+||+++|++|
T Consensus 3 ~~~~v~v~~~~~V~P~~~~~~-----~~~~~LS~lD~~~~~~~~~~~~~~y~~~~-~~~~~~~~~~~~Lk~sLs~~L~~~ 76 (454)
T 2e1v_A 3 SLPILTVLEQSQVSPPPDTLG-----DKSLQLTFFDFFWLRSPPINNLFFYELPI-TRSQFTETVVPNIKHSLSITLKHF 76 (454)
T ss_dssp ---CEEEEEEEEECCCTTSCC-----CEEEECCHHHHTTTTCCCEEEEEEEECCC-CHHHHHHTHHHHHHHHHHHHHTTC
T ss_pred CCceEEEEEEEEEeCCCCCCC-----CceecCchHHhhhhccCCccEEEEEeCCC-CcchhhHHHHHHHHHHHHHHhhhc
Confidence 457899999999999987542 78999999999866666999999999754 312223567999999999999999
Q ss_pred cccCcEEe-CCCCCCCceEEeeCCCceEEEEEEeccchhhhhcCCCCCCccccccCCCCCCCCCC-----CCCcEEEEEE
Q 042848 92 LPVAGHLM-WPPDAEKPAVYYFKDDGVSVTVAESNADLRRLLSSNNGTRRAVEFHPLAPRLSISE-----DKAEVTAIQI 165 (339)
Q Consensus 92 p~LaGrl~-~~~~~g~~~i~~~~~~gv~f~~a~~d~~~~~l~~~~~~p~~~~~~~~l~p~~~~~~-----~~~Pll~vQv 165 (339)
|||||||+ .++++|+++|+|++++||.|++|+++.+++++.. ..+.+...++.|+|..+... .+.|++.|||
T Consensus 77 ~plAGRl~~~~~~~g~~~i~c~~~~gv~fv~A~~~~~l~~l~~--~~~~~~~~~~~l~p~~~~~~~~~~~~~~pll~vQv 154 (454)
T 2e1v_A 77 YPFVGKLVVYPAPTKKPEICYVEGDSVAVTFAECNLDLNELTG--NHPRNCDKFYDLVPILGESTRLSDCIKIPLFSVQV 154 (454)
T ss_dssp GGGGSEEEECSSSSSCCEEEECTTCCEEEEEEEECSCGGGTSS--SSCEEGGGGGGGSCCCCCCEECSSCEEEECEEEEE
T ss_pred cccceeeeeccCCCCCEEEEECCCCcEEEEEEEeCCCHHHhcC--CCCCcchhhhcCCCCCCCcccccccccCceEEEEE
Confidence 99999998 6534589999997458999999999999999965 33334445677888765322 2459999999
Q ss_pred EEecCCeEEEEEeeeccccchHHHHHHHHHHHHHHHhhhccCCcCCCCCCCCCCCCCccccccccCCCCCchHHHHHHhh
Q 042848 166 TLFPNQGFSICISVHHTVIDGKSAVLFIKSWAYLCKKLQQQNVVVPVPSLLPESLTPCFDRSLIKDPHGIDMVYVKQLMA 245 (339)
Q Consensus 166 t~f~~GG~~L~~~~~H~v~Dg~g~~~fl~~Wa~~~r~~~G~~~~~~~~~~l~~~~~P~~dr~~l~~p~~~~~~~~~~~~~ 245 (339)
|+|+|||++||+++||.++||.|+++|+++||++||. |... ....++.+.|++|| .+.+|+ +...+.+.+..
T Consensus 155 T~f~cgG~~lg~~~~H~v~Dg~~~~~Fl~awa~~~r~--g~~~----~~~~~~~~~P~~dr-~l~~p~-~~~~~~~~~~~ 226 (454)
T 2e1v_A 155 TLFPNQGIAIGITNHHCLGDASTRFCFLKAWTSIARS--GNND----ESFLANGTRPLYDR-IIKYPM-LDEAYLKRAKV 226 (454)
T ss_dssp EEETTTEEEEEEEECGGGCCHHHHHHHHHHHHHHHHT--TSCC----HHHHHHSCCCBCCC-CCCCHH-HHHHHHHHTTC
T ss_pred EEecCCcEEEEEEeeeeecchhHHHHHHHHHHHHhcc--CCCc----cccCCCCCCCcccc-cCCCCC-cchHHHHhhhc
Confidence 9999999999999999999999999999999999992 3210 00011134689999 776543 22222112210
Q ss_pred hcC-CCCCCCCcccccCCCcCCCceEEEEEEeCHHHHHHHHHHhhhhcccCCCCCCCCCCHHHHHHHHHHHHHHHhcCCC
Q 042848 246 FTG-SDPNTRSLKVTIPVAKVDSNLVRKTFTLTREDLNKLKHKLVLVNKDQHPSKQLHSSTFVLTCAHVFVCLVKARGED 324 (339)
Q Consensus 246 ~~~-~~~~~~~~~~~~p~~~~~~~~~~~~f~fs~~~l~~LK~~a~~~~~~~~~~~~~~~St~dal~A~iW~~i~rAr~~~ 324 (339)
... ..+.+..+ ..+.+.+.++|+|++++|++||+.+..+.. +..++|+||+|+||+|||++|||
T Consensus 227 ~~~~~~~~~~~~-------~~~~~~~~~~f~f~~~~i~~LK~~a~~~~~-----~~~~~St~d~l~A~lWr~~~~Ar--- 291 (454)
T 2e1v_A 227 ESFNEDYVTQSL-------AGPSDKLRATFILTRAVINQLKDRVLAQLP-----TLEYVSSFTVACAYIWSCIAKSR--- 291 (454)
T ss_dssp TTHHHHCCCCCC-------CCCCCEEEEEEEECHHHHHHHHHHHHHHCT-----TCSCCCHHHHHHHHHHHHHHHHH---
T ss_pred cccccccCcccC-------CCCCCceEEEEEECHHHHHHHHHHHhhcCC-----CCCcccHHHHHHHHHHHHHhhhc---
Confidence 000 00000110 023467899999999999999999986542 12589999999999999999999
Q ss_pred CCCeEEEEEeeccCC
Q 042848 325 ANTTVTFWVPADCRS 339 (339)
Q Consensus 325 ~~~~~~l~~avd~R~ 339 (339)
+++.+++.++||+|+
T Consensus 292 ~~~~~~l~~~vd~R~ 306 (454)
T 2e1v_A 292 NDKLQLFGFPIDRRA 306 (454)
T ss_dssp CCSEEEEEEEEECGG
T ss_pred CCCceEEEEEecchh
Confidence 678999999999995
No 4
>2bgh_A Vinorine synthase; VS, BAHD, acetyltransferase, auto-rickshaw, transferase; 2.6A {Rauvolfia serpentina}
Probab=100.00 E-value=1.8e-49 Score=383.34 Aligned_cols=269 Identities=20% Similarity=0.287 Sum_probs=212.0
Q ss_pred cceEEEEeEeecCCCCCchhhcccCccccCCcccccccccCcccEEEEEecCCCCCCcchhhHHHHHHHHHHHhhhhccc
Q 042848 14 RLVKIHEACKVPPFSDDSTAAAVAATTLPLTYFDTYCFNLSPVDILLFYEIKDLTWDSFNSEILPKLKHSLSITLLHYLP 93 (339)
Q Consensus 14 ~~V~v~~~~~V~P~~~~~~~~~~~~~~~~LS~lD~~~~~~~y~~~~~~f~~~~~~~~~~~~~~~~~L~~sL~~~L~~~p~ 93 (339)
|+|+|.++++|+|+.|||. +.+.++||+||+.... .|++.+|||+.+. ......+.++++||+||+++|++|||
T Consensus 3 m~v~v~~~~~V~P~~ptp~----~~~~~~LS~lD~~~~~-~~~~~~~~y~~~~-~~~~~~~~~~~~Lk~sLs~~L~~~~p 76 (421)
T 2bgh_A 3 PQMEKVSEELILPSSPTPQ----SLKCYKISHLDQLLLT-CHIPFILFYPNPL-DSNLDPAQTSQHLKQSLSKVLTHFYP 76 (421)
T ss_dssp -CEEEEEEEEEECSSCCCT----TSCCCBCCHHHHTSCS-SEEEEEEEECCCS-SCCCCHHHHHHHHHHHHHHHTTTSGG
T ss_pred ceEEEeeeEEEeCCCCCCC----CCcccCCChHHhcccc-cccceEEEEeCCC-ccccchhhHHHHHHHHHHHHhhhcch
Confidence 5799999999999998872 2458999999998554 5999999998754 21101356899999999999999999
Q ss_pred cCcEEeCCCCCCCceEEeeCCCceEEEEEEeccchhhhhcCCCCCCccccccCCCCCCCCC-----CCCCcEEEEEEEEe
Q 042848 94 VAGHLMWPPDAEKPAVYYFKDDGVSVTVAESNADLRRLLSSNNGTRRAVEFHPLAPRLSIS-----EDKAEVTAIQITLF 168 (339)
Q Consensus 94 LaGrl~~~~~~g~~~i~~~~~~gv~f~~a~~d~~~~~l~~~~~~p~~~~~~~~l~p~~~~~-----~~~~Pll~vQvt~f 168 (339)
|||||+ ++++|+|+ ++||.|+++++|.+++++.. ..| +...++.|+|..... ..+.|++.||||+|
T Consensus 77 lAGRl~-----~~~~i~c~-~~Gv~fv~A~~d~~l~~~~~--~~p-~~~~~~~l~p~~~~~~~~~~~~~~pll~vQvt~f 147 (421)
T 2bgh_A 77 LAGRIN-----VNSSVDCN-DSGVPFVEARVQAQLSQAIQ--NVV-ELEKLDQYLPSAAYPGGKIEVNEDVPLAVKISFF 147 (421)
T ss_dssp GGSEEE-----TTTEEECC-CCCEEEEEEEESSCHHHHHS--CCS-SGGGGGGGSSSCSSSSSSSCCCTTCSEEEEEEEC
T ss_pred hccccC-----CCcEEEEc-CCceEEEEEEEcCCHHHHhc--cCC-ChHHHHhcCCCCCCccccccccCCceEEEEEEEE
Confidence 999997 25999996 89999999999999999965 323 233456777754211 34689999999999
Q ss_pred cCCeEEEEEeeeccccchHHHHHHHHHHHHHHHhhhccCCcCCCCCCCCCCCCCcccc-ccccCC-CCCchHHHHHHhhh
Q 042848 169 PNQGFSICISVHHTVIDGKSAVLFIKSWAYLCKKLQQQNVVVPVPSLLPESLTPCFDR-SLIKDP-HGIDMVYVKQLMAF 246 (339)
Q Consensus 169 ~~GG~~L~~~~~H~v~Dg~g~~~fl~~Wa~~~r~~~G~~~~~~~~~~l~~~~~P~~dr-~~l~~p-~~~~~~~~~~~~~~ 246 (339)
+|||++||+++||.++||.|+++|+++||++|| |.. .+ +.|++|| +.+..+ .....
T Consensus 148 ~cgG~~lg~~~~H~v~Dg~~~~~fl~~wa~~~r---g~~--------~~--~~P~~dr~~~l~p~~~~~~~--------- 205 (421)
T 2bgh_A 148 ECGGTAIGVNLSHKIADVLSLATFLNAWTATCR---GET--------EI--VLPNFDLAARHFPPVDNTPS--------- 205 (421)
T ss_dssp TTSCEEEEEEEETTTCCHHHHHHHHHHHHHHHT---TCS--------CC--CCCBCSHHHHHSCCCTTCCC---------
T ss_pred cCCCEEEEEEeeEEechHHHHHHHHHHHHHHhc---CCC--------CC--CCCccccccccCCCcccCCC---------
Confidence 999999999999999999999999999999999 854 11 4688998 655432 11100
Q ss_pred cCCCCCCCCcccccCCCcCCCceEEEEEEeCHHHHHHHHHHhhhhcccCCCCCCCCCCHHHHHHHHHHHHHHHhcCCC--
Q 042848 247 TGSDPNTRSLKVTIPVAKVDSNLVRKTFTLTREDLNKLKHKLVLVNKDQHPSKQLHSSTFVLTCAHVFVCLVKARGED-- 324 (339)
Q Consensus 247 ~~~~~~~~~~~~~~p~~~~~~~~~~~~f~fs~~~l~~LK~~a~~~~~~~~~~~~~~~St~dal~A~iW~~i~rAr~~~-- 324 (339)
+.. ....++++++|+|++++|++||+.+.+.. +..++|+||+|+||+|||++|||+..
T Consensus 206 ------~~~--------~~~~~~~~~~f~f~~~~i~~LK~~a~~~~------~~~~~St~d~l~A~iW~~~~~Ar~~~~~ 265 (421)
T 2bgh_A 206 ------PEL--------VPDENVVMKRFVFDKEKIGALRAQASSAS------EEKNFSRVQLVVAYIWKHVIDVTRAKYG 265 (421)
T ss_dssp ------CCC--------CCCSSEEEEEEEECHHHHHHHHHHTC-----------CCCCHHHHHHHHHHHHHHHHHHHHSC
T ss_pred ------Ccc--------CCccceEEEEEEECHHHHHHHHHHhhccC------CCCCCchhHhHHHHHHHHHHHHhcccCC
Confidence 000 02346889999999999999999997643 12579999999999999999998653
Q ss_pred CCCeEEEEEeeccCC
Q 042848 325 ANTTVTFWVPADCRS 339 (339)
Q Consensus 325 ~~~~~~l~~avd~R~ 339 (339)
+++.+++.++||+|+
T Consensus 266 ~~~~~~l~~~vd~R~ 280 (421)
T 2bgh_A 266 AKNKFVVVQAVNLRS 280 (421)
T ss_dssp CCSCEEEEEEEESGG
T ss_pred CCCceEEEEEecCcc
Confidence 567899999999995
No 5
>2rkv_A Trichothecene 3-O-acetyltransferase; BAHD superfamily, deoxyniv T-2, acetyl COA, fusarium; HET: COA MPO ZBA; 1.60A {Gibberella zeae} PDB: 3b2s_A* 3b30_A* 2rkt_A* 2zba_A*
Probab=100.00 E-value=4.4e-42 Score=334.49 Aligned_cols=267 Identities=17% Similarity=0.187 Sum_probs=189.2
Q ss_pred cccCCcccccc--cccCcccEEEEEecCCCCCCcchhhHHHHHHHHHHHhhhhccccCcEEeCCC----CCCCceEEeeC
Q 042848 40 TLPLTYFDTYC--FNLSPVDILLFYEIKDLTWDSFNSEILPKLKHSLSITLLHYLPVAGHLMWPP----DAEKPAVYYFK 113 (339)
Q Consensus 40 ~~~LS~lD~~~--~~~~y~~~~~~f~~~~~~~~~~~~~~~~~L~~sL~~~L~~~p~LaGrl~~~~----~~g~~~i~~~~ 113 (339)
.++||.|||++ ++ .|++.+|||+.++ ... .++++++||+||+++|++||||||||+.++ ++|+++|+|+
T Consensus 4 ~~~Ls~lD~~~~~~~-~y~~~~~~y~~~~-~~~--~~~~~~~Lk~sLs~~L~~~~plAGRl~~~~~~~~~~g~~~i~~~- 78 (451)
T 2rkv_A 4 KIQLDTLGQLPGLLS-IYTQISLLYPVSD-SSQ--YPTIVSTFEQGLKRFSEAVPWVAGQVKAEGISEGNTGTSFIVPF- 78 (451)
T ss_dssp CEECCGGGGCTTGGG-CEEEEEEEEECSC-GGG--HHHHHHHHHHHHHHHHHHSGGGGCEEEEESCBTTBCCEEEEECC-
T ss_pred cccCChhhcCccccc-cceeEEEEEECCC-CCC--HHHHHHHHHHHHHHHHHhCCceeEEEEECCCCCCCCCcEEEeec-
Confidence 46999999986 35 4999999999643 211 456899999999999999999999998754 2489999985
Q ss_pred CCceEEEEEEecc-----chhhhhcCCCCCCccccccCCCCC--CCC-----CCCCCcEEEEEEEEecCCeEEEEEeeec
Q 042848 114 DDGVSVTVAESNA-----DLRRLLSSNNGTRRAVEFHPLAPR--LSI-----SEDKAEVTAIQITLFPNQGFSICISVHH 181 (339)
Q Consensus 114 ~~gv~f~~a~~d~-----~~~~l~~~~~~p~~~~~~~~l~p~--~~~-----~~~~~Pll~vQvt~f~~GG~~L~~~~~H 181 (339)
+.++.|++++++. +++++... +.|........+.|. .+. ...+.|++.||||+| |||++||+++||
T Consensus 79 ~~~~~~~va~~~~d~~~p~~~~l~~~-~~p~~~~~~~~~~p~~~~p~~~~~~~~~~~pll~vQvT~~-~GG~~lg~~~~H 156 (451)
T 2rkv_A 79 EDVPRVVVKDLRDDPSAPTIEGMRKA-GYPMAMFDENIIAPRKTLPIGPGTGPDDPKPVILLQLNFI-KGGLILTVNGQH 156 (451)
T ss_dssp CSSCEEEEEECTTCTTSCBHHHHHHH-TSCGGGSBHHHHCSSCSSSCSTTCSTTSCCBSEEEEEEEE-BTEEEEEEEEET
T ss_pred CCCCeEEEEeCCCCCCCCCHHHHHHc-CCChhhcCHhhcCCcccCCCCcccCCCCCCceEEEEEEEe-cCceeeeeeehh
Confidence 6666699988764 68887531 333221111123332 111 123589999999987 999999999999
Q ss_pred cccchHHHHHHHHHHHHHHHhhhccCCcCCCCCCCCC--CCCCccccccccC-----CCCCchHHHHHHhhhcCCCCCCC
Q 042848 182 TVIDGKSAVLFIKSWAYLCKKLQQQNVVVPVPSLLPE--SLTPCFDRSLIKD-----PHGIDMVYVKQLMAFTGSDPNTR 254 (339)
Q Consensus 182 ~v~Dg~g~~~fl~~Wa~~~r~~~G~~~~~~~~~~l~~--~~~P~~dr~~l~~-----p~~~~~~~~~~~~~~~~~~~~~~ 254 (339)
.++||.|+++|+++||++|| |.. ++. ...|++||+.+.. ++.....+ .++... .
T Consensus 157 ~v~Dg~g~~~Fl~awa~~~r---g~~--------~~~~~~~~p~~dr~~~~p~~~~~~p~~~~~~-~~~~~~-------~ 217 (451)
T 2rkv_A 157 GAMDMVGQDAVIRLLSKACR---NDP--------FTEEEMTAMNLDRKTIVPYLENYTIGPEVDH-QIVKAD-------V 217 (451)
T ss_dssp TTCCHHHHHHHHHHHHHHHH---TCC--------CCHHHHHHTTCCSTTSSCCCTTCCCCGGGTT-CBCCTT-------S
T ss_pred ccccHHHHHHHHHHHHHHhc---CCC--------CCccccccccCchhhccccccccCCCccccc-cccCCC-------C
Confidence 99999999999999999999 843 221 0247888875431 11110000 011100 0
Q ss_pred CcccccCCCcCCCceEEEEEEeCHHHHHHHHHHhhhhcccCCCCCCCCCCHHHHHHHHHHHHHHHhc-C-CCCCCeEEEE
Q 042848 255 SLKVTIPVAKVDSNLVRKTFTLTREDLNKLKHKLVLVNKDQHPSKQLHSSTFVLTCAHVFVCLVKAR-G-EDANTTVTFW 332 (339)
Q Consensus 255 ~~~~~~p~~~~~~~~~~~~f~fs~~~l~~LK~~a~~~~~~~~~~~~~~~St~dal~A~iW~~i~rAr-~-~~~~~~~~l~ 332 (339)
.... ......++++++|+|++++|++||+++.++... +..++||||+|+||+|||++||| . .++++.+++.
T Consensus 218 ~~~~---~~~~~~~~~~~~f~f~~~~i~~LK~~a~~~~~~----~~~~~St~d~l~A~~Wr~~~~Ar~~~~~~~~~~~l~ 290 (451)
T 2rkv_A 218 AGGD---AVLTPVSASWAFFTFSPKAMSELKDAATKTLDA----STKFVSTDDALSAFIWKSASRVRLERIDGSAPTEFC 290 (451)
T ss_dssp CC----------CCEEEEEEEECHHHHHHHHHHHHTTCCT----TCSCCCHHHHHHHHHHHHHHHHHTTTSCTTSEEEEE
T ss_pred CCCC---CCCCCCCceEEEEEECHHHHHHHHHHHhhhccC----CCCCccHHHHHHHHHHHHHHHHHhccCCCCCceEEE
Confidence 0000 001234678999999999999999999865421 13679999999999999999998 3 5678899999
Q ss_pred EeeccCC
Q 042848 333 VPADCRS 339 (339)
Q Consensus 333 ~avd~R~ 339 (339)
++||+|+
T Consensus 291 ~~vd~R~ 297 (451)
T 2rkv_A 291 RAVDARP 297 (451)
T ss_dssp EEEECHH
T ss_pred EEecccc
Confidence 9999994
No 6
>1q9j_A PAPA5, polyketide synthase associated protein 5; conjugating enzyme PAPA5, structural genomics, PSI protein structure initiative; 2.75A {Mycobacterium tuberculosis} SCOP: c.43.1.2 c.43.1.2
Probab=98.64 E-value=1.3e-06 Score=82.69 Aligned_cols=254 Identities=13% Similarity=0.128 Sum_probs=139.1
Q ss_pred CccccCCcccccccccCcccEEEEEecCCCCCCcchhhHHHHHHHHHHHhhhhccccCcEEeCCCCCCCceEEeeCCCce
Q 042848 38 ATTLPLTYFDTYCFNLSPVDILLFYEIKDLTWDSFNSEILPKLKHSLSITLLHYLPVAGHLMWPPDAEKPAVYYFKDDGV 117 (339)
Q Consensus 38 ~~~~~LS~lD~~~~~~~y~~~~~~f~~~~~~~~~~~~~~~~~L~~sL~~~L~~~p~LaGrl~~~~~~g~~~i~~~~~~gv 117 (339)
...+|||++.+.+....| ...+.|.... .. .+++|+++|.+++.++|.|-.++...++ +.+.+... ...+
T Consensus 5 ~~~~pls~~Q~~~~~~~y-~~~~~~~l~g-~l------d~~~l~~A~~~lv~rh~~LRt~f~~~~~-~~~q~v~~-~~~~ 74 (422)
T 1q9j_A 5 SVIRKLSHSEEVFAQYEV-FTSMTIQLRG-VI------DVDALSDAFDALLETHPVLASHLEQSSD-GGWNLVAD-DLLH 74 (422)
T ss_dssp SEEEECCHHHHHHHHTTC-EEEEEEEEES-CC------CHHHHHHHHHHHHHHCGGGSEEEEECTT-SSEEEEEC-CSSS
T ss_pred ceeecCCHHHHHHHhcCc-eEEEEEEEec-CC------CHHHHHHHHHHHHHhCccceEEEEecCC-cceeeecc-CCCC
Confidence 567899998875432212 2333444432 22 2789999999999999999999986543 33333322 2222
Q ss_pred E-EEEEEeccchhhhhcCCCCCCccccccCCCCCCCCCCCCCcEEEEEEEEecCCeEEEEEeeeccccchHHHHHHHHHH
Q 042848 118 S-VTVAESNADLRRLLSSNNGTRRAVEFHPLAPRLSISEDKAEVTAIQITLFPNQGFSICISVHHTVIDGKSAVLFIKSW 196 (339)
Q Consensus 118 ~-f~~a~~d~~~~~l~~~~~~p~~~~~~~~l~p~~~~~~~~~Pll~vQvt~f~~GG~~L~~~~~H~v~Dg~g~~~fl~~W 196 (339)
. +.+.+. .+... . ..+..- ..+.+ ...|++.+.+.. ..++..|.+.+||.++||.|+..|++.|
T Consensus 75 ~~~~~~d~----~~~~~--~-----~~~~~~--~~~~d-~~~pl~r~~l~~-~~~~~~l~l~~hH~i~Dg~S~~~l~~~l 139 (422)
T 1q9j_A 75 SGICVIDG----TAATN--G-----SPSGNA--ELRLD-QSVSLLHLQLIL-REGGAELTLYLHHCMADGHHGAVLVDEL 139 (422)
T ss_dssp CCCEEEC-----------------------C--CCCCC-TTTCSEEEEEEC-CSSSCEEEEEEEGGGCCHHHHHHHHHHH
T ss_pred CceEEEEC----CCCCc--c-----hhhhcc--cCccC-CCCCcEEEEEEe-cCCCeEEEEEeceEEEchhhHHHHHHHH
Confidence 2 222211 10000 0 000000 11222 467888888877 7889999999999999999999999999
Q ss_pred HHHHHhh-hccCCcCCCCCCCCCCCCCccc--ccccc-C------CCCCchHHHHHHhhhcCCCCC-CCCcccccCCCcC
Q 042848 197 AYLCKKL-QQQNVVVPVPSLLPESLTPCFD--RSLIK-D------PHGIDMVYVKQLMAFTGSDPN-TRSLKVTIPVAKV 265 (339)
Q Consensus 197 a~~~r~~-~G~~~~~~~~~~l~~~~~P~~d--r~~l~-~------p~~~~~~~~~~~~~~~~~~~~-~~~~~~~~p~~~~ 265 (339)
.+.+++. .|.. ...+++ .+..+ ..... . ...... ...+|+.- ... ...+....+.. .
T Consensus 140 ~~~Y~~~~~~~~-----~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~W~~---~l~~~~~lp~~~~~~-~ 207 (422)
T 1q9j_A 140 FSRYTDAVTTGD-----PGPITP--QPTPLSMEAVLAQRGIRKQGLSGAER-FMSVMYAY---EIPATETPAVLAHPG-L 207 (422)
T ss_dssp HHHHHHHHHSSS-----CCCCCC--CCCCBCHHHHHHHSSCCC-----CTT-SSTTTTCC----------------CC-S
T ss_pred HHHHHHhhccCC-----CCCCCC--CCCCCCHHHHHHhcCCcccccchhhh-hhhhhhcc---cCCCcccCCCCCCCC-C
Confidence 9999832 1112 011110 11111 11000 0 000000 00122210 000 00000000000 1
Q ss_pred CCceEEEEEEeCHHHHHHHHHHhhhhcccCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCCCeEEEEEeeccCC
Q 042848 266 DSNLVRKTFTLTREDLNKLKHKLVLVNKDQHPSKQLHSSTFVLTCAHVFVCLVKARGEDANTTVTFWVPADCRS 339 (339)
Q Consensus 266 ~~~~~~~~f~fs~~~l~~LK~~a~~~~~~~~~~~~~~~St~dal~A~iW~~i~rAr~~~~~~~~~l~~avd~R~ 339 (339)
........+.++++..++||+.|... .+|.+.++.|.+...+.|-+. .......+.+++++|.
T Consensus 208 ~~~~~~~~~~l~~~~~~~l~~~a~~~----------~~t~~~~l~aa~~~~l~r~~~-~~~~~v~~g~~~~~R~ 270 (422)
T 1q9j_A 208 PQAVPVTRLWLSKQQTSDLMAFGREH----------RLSLNAVVAAAILLTEWQLRN-TPHVPIPYVYPVDLRF 270 (422)
T ss_dssp BCCCCEEEECCCHHHHHHHHHHHTTT----------TCCHHHHHHHHHHHHHHHHHT-CSSCCEEEEEEEETTT
T ss_pred CCCccceEEEeCHHHHHHHHHHHHHh----------CCCHHHHHHHHHHHHHHhccc-CCCceEEEeeeeeccc
Confidence 11235678899999999999988643 489999999987777776522 2346788999999984
No 7
>2jgp_A Tyrocidine synthetase 3; multifunctional enzyme, antibiotic biosynthesis, condensatio domain, peptide bond formation, ligase; 1.85A {Brevibacillus brevis}
Probab=98.19 E-value=0.00034 Score=68.12 Aligned_cols=218 Identities=13% Similarity=0.177 Sum_probs=126.3
Q ss_pred HHHHHHHHHHhhhhccccCcEEeCCCCCCCceEEeeCCCceEEEEEEec-cchhhhhcCCCCCCccccccCCCCCCCCCC
Q 042848 77 LPKLKHSLSITLLHYLPVAGHLMWPPDAEKPAVYYFKDDGVSVTVAESN-ADLRRLLSSNNGTRRAVEFHPLAPRLSISE 155 (339)
Q Consensus 77 ~~~L~~sL~~~L~~~p~LaGrl~~~~~~g~~~i~~~~~~gv~f~~a~~d-~~~~~l~~~~~~p~~~~~~~~l~p~~~~~~ 155 (339)
+++|++++.+++.+++.|--++...+ |.+.-...+...+.+.+.+.+ ..+.++.. . +. .+.+-
T Consensus 133 ~~~l~~A~~~lv~rh~~LRt~f~~~~--~~~~q~v~~~~~~~~~~~~~~~~~~~~~~~--~----------~~--~~fdl 196 (520)
T 2jgp_A 133 RTRVEAAFQRLIARHESLRTSFAVVN--GEPVQNIHEDVPFALAYSEVTEEEARELVS--S----------LV--QPFDL 196 (520)
T ss_dssp HHHHHHHHHHHHHHCGGGGEEEEEET--TEEEEEECSCCCCCCEEEECCHHHHHHHHH--H----------TC--CCCCT
T ss_pred HHHHHHHHHHHHHHhHhheeEEEeeC--CEEEEEECCCCCCceEEEeCCHHHHHHHHH--H----------hc--CCCCC
Confidence 78999999999999999988887533 333222212222223222221 11222211 0 00 01111
Q ss_pred CCCcEEEEEEEEecCCeEEEEEeeeccccchHHHHHHHHHHHHHHHhhhccCCcCCCCCCCCCCCCCcccccccc---C-
Q 042848 156 DKAEVTAIQITLFPNQGFSICISVHHTVIDGKSAVLFIKSWAYLCKKLQQQNVVVPVPSLLPESLTPCFDRSLIK---D- 231 (339)
Q Consensus 156 ~~~Pll~vQvt~f~~GG~~L~~~~~H~v~Dg~g~~~fl~~Wa~~~r~~~G~~~~~~~~~~l~~~~~P~~dr~~l~---~- 231 (339)
...|++.+.+-....+...|.+.+||.++||.|+..|++.+.+.++ |.. +++. .+.+ ++... .
T Consensus 197 ~~~pl~r~~l~~~~~~~~~l~~~~HH~i~Dg~S~~~l~~el~~~Y~---~~~--------l~~~-~~~~-~d~~~~~~~~ 263 (520)
T 2jgp_A 197 EVAPLIRVSLLKIGEDRYVLFTDMHHSISDGVSSGILLAEWVQLYQ---GDV--------LPEL-RIQY-KDFAVWQQEF 263 (520)
T ss_dssp TSSCCEEEEEEEEETTEEEEEEEEBGGGCCHHHHHHHHHHHHHHHT---TCC--------CCCC-SCCH-HHHHHHHHHH
T ss_pred CCCcceeEEEEEEcCCcEEEEEEccceeecHhHHHHHHHHHHHHHc---cCC--------CCCC-CCCH-HHHHHHHHHh
Confidence 3568888887777678899999999999999999999999999998 633 2211 1111 11110 0
Q ss_pred CCCCchHHHHHHhhh--cCCCCCCCCcccc--cCCCc-CCCceEEEEEEeCHHHHHHHHHHhhhhcccCCCCCCCCCCHH
Q 042848 232 PHGIDMVYVKQLMAF--TGSDPNTRSLKVT--IPVAK-VDSNLVRKTFTLTREDLNKLKHKLVLVNKDQHPSKQLHSSTF 306 (339)
Q Consensus 232 p~~~~~~~~~~~~~~--~~~~~~~~~~~~~--~p~~~-~~~~~~~~~f~fs~~~l~~LK~~a~~~~~~~~~~~~~~~St~ 306 (339)
...-......+|+.- .+. +....+. .+.+. .........+.++++..++|++.|... .+|.+
T Consensus 264 ~~~~~~~~~~~yW~~~l~~~---~~~~~lp~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~a~~~----------~~T~~ 330 (520)
T 2jgp_A 264 SQSAAFHKQEAYWLQTFADD---IPVLNLPTDFTRPSTQSFAGDQCTIGAGKALTEGLHQLAQAT----------GTTLY 330 (520)
T ss_dssp TTSHHHHHHHHHHHHHTSSC---CCCCCCCCSSCCCSSCCCBEEEEEEECCHHHHHHHHHHHHHH----------TCCHH
T ss_pred hcChhhHHHHHHHHHHhCCC---CCcCCCCCCCCCCCCCCCCccEEEEeCCHHHHHHHHHHHHHc----------CCCHH
Confidence 000000111233321 110 0111110 00000 112345678899999999999988754 37899
Q ss_pred HHHHHHHHHHHHHhcCCCCCCeEEEEEeeccCC
Q 042848 307 VLTCAHVFVCLVKARGEDANTTVTFWVPADCRS 339 (339)
Q Consensus 307 dal~A~iW~~i~rAr~~~~~~~~~l~~avd~R~ 339 (339)
.++.|.+-..+.+--+ .+...+.+++++|.
T Consensus 331 ~~l~aa~a~~L~~~~~---~~dv~~g~~~~gR~ 360 (520)
T 2jgp_A 331 MVLLAAYNVLLAKYAG---QEDIIVGTPITGRS 360 (520)
T ss_dssp HHHHHHHHHHHHHHHT---CSCEEEEEEECCCC
T ss_pred HHHHHHHHHHHHHhcC---CCCeEEEeccCCCC
Confidence 9999977766666544 35688999999984
No 8
>4hvm_A Tlmii; PSI-biology, midwest center for structural genomics, MCSG, N product biosynthesis, natPro; 2.70A {Streptoalloteichus hindustanus}
Probab=98.11 E-value=2.6e-05 Score=75.57 Aligned_cols=243 Identities=5% Similarity=-0.076 Sum_probs=133.5
Q ss_pred CccccCCcccccc-------cccCcccEEEEEecCCCCCCcchhhHHHHHHHHHHHhhhhccccCcEEeCCCCCCCceEE
Q 042848 38 ATTLPLTYFDTYC-------FNLSPVDILLFYEIKDLTWDSFNSEILPKLKHSLSITLLHYLPVAGHLMWPPDAEKPAVY 110 (339)
Q Consensus 38 ~~~~~LS~lD~~~-------~~~~y~~~~~~f~~~~~~~~~~~~~~~~~L~~sL~~~L~~~p~LaGrl~~~~~~g~~~i~ 110 (339)
...+|||+.-+.+ .... ....+.|+... .. .+++|++++.+++.+++.|--++...+ |.+. .
T Consensus 11 ~~~~Pls~~Q~~~~~~~~~~~~~~-y~~~~~~~l~g-~l------d~~~L~~A~~~lv~rh~~LRt~f~~~~--~~~~-~ 79 (493)
T 4hvm_A 11 PGLRRASFLQRGAWRWLREAPPAA-AFAARGLLGSG-RI------DDDRLAAAADEVLDAFPLLRVNFVDDD--GLWM-R 79 (493)
T ss_dssp -CEEECCHHHHHHHHHHTTSCGGG-GEEEEEEEEES-SC------CHHHHHHHHHHHHHHCGGGGEEEEESS--SEEE-E
T ss_pred CCCCCCCHHHHHHHHHHhhCCCCc-ceeEEEEEEeC-CC------CHHHHHHHHHHHHHhchhceeEEEccC--CEEE-E
Confidence 5578888765421 1111 22334444433 22 389999999999999999988887643 4554 3
Q ss_pred eeCCCceEEEEEEecc------chhhhhcCCCCCCccccccCCCCCCCCCCCCCcEEEEEEEEecCCeEEEEEeeecccc
Q 042848 111 YFKDDGVSVTVAESNA------DLRRLLSSNNGTRRAVEFHPLAPRLSISEDKAEVTAIQITLFPNQGFSICISVHHTVI 184 (339)
Q Consensus 111 ~~~~~gv~f~~a~~d~------~~~~l~~~~~~p~~~~~~~~l~p~~~~~~~~~Pll~vQvt~f~~GG~~L~~~~~H~v~ 184 (339)
..+.. +.+.+.+... .+.++.. .. .. .+.+-...|++.+.+-....+...|.+.+||.++
T Consensus 80 v~~~~-~~~~~~d~~~~~~~~~~~~~~~~--~~---------~~--~~fdl~~~pl~r~~l~~~~~~~~~l~l~~HH~i~ 145 (493)
T 4hvm_A 80 TRENA-DALVRSDLRGHPDPQARCVELLR--AD---------RD--RPTDPERDPLVRLHLVRLSETDVVLGVVAHQMLL 145 (493)
T ss_dssp ECSCC-CCEEEEECTTSSSHHHHHHHHHH--HH---------HS--SCCCTTTSCSEEEEEEECSSSEEEEEEEEETTTC
T ss_pred ecCCC-CCceEEECCCCCchHHHHHHHHH--HH---------hc--CCCCCCCCCeEEEEEEEECCCcEEEEEecchhhc
Confidence 33233 5555444311 1112111 00 00 0111135688888887776677899999999999
Q ss_pred chHHHHHHHHHHHHHHHhhhccCCcCCCCCCCCCCCCCccccccccCC-C--CCch---HHHHHHhh--hcCCCCCCCCc
Q 042848 185 DGKSAVLFIKSWAYLCKKLQQQNVVVPVPSLLPESLTPCFDRSLIKDP-H--GIDM---VYVKQLMA--FTGSDPNTRSL 256 (339)
Q Consensus 185 Dg~g~~~fl~~Wa~~~r~~~G~~~~~~~~~~l~~~~~P~~dr~~l~~p-~--~~~~---~~~~~~~~--~~~~~~~~~~~ 256 (339)
||.|+..|++.+.+.+. |.. ++ .+. ++..... . .... ....+|+. +.+.. . +
T Consensus 146 Dg~S~~~l~~~l~~~Y~---g~~---------~~--~~~--~~~~~~~~~~~~~~~~~~~~~~~~W~~~l~~~~---~-l 205 (493)
T 4hvm_A 146 DARSRYMVLGAVWQAYY---GRF---------RP--AQY--RDFAEVADFHPLDRETVRVARHRWWSRRLPALP---V-R 205 (493)
T ss_dssp CHHHHHHHHHHHHHHHT---TCC---------CG--GGS--BCGGGTTTCCTTCSHHHHHHHHHHHHHHGGGSC---C-C
T ss_pred cHHHHHHHHHHHHHHhC---CCC---------CC--cCH--HHHHHHHhhhhcccChhhHHHHHHHHHhccCCC---C-C
Confidence 99999999999999997 843 11 111 1111100 0 1111 11123332 11111 1 1
Q ss_pred ccccCCCcCCCceEEEEEEeCHHHHHHHHHHhhhhcccCCCCCCCCCC--HHHHHHHHHHHHHHHhcCC--------CCC
Q 042848 257 KVTIPVAKVDSNLVRKTFTLTREDLNKLKHKLVLVNKDQHPSKQLHSS--TFVLTCAHVFVCLVKARGE--------DAN 326 (339)
Q Consensus 257 ~~~~p~~~~~~~~~~~~f~fs~~~l~~LK~~a~~~~~~~~~~~~~~~S--t~dal~A~iW~~i~rAr~~--------~~~ 326 (339)
...|. .........+.++.+..++|++.|... .+| .+.++.|.+-..+.+-+.. ...
T Consensus 206 -~~~~~--~~~~~~~~~~~l~~~~~~~l~~~a~~~----------~vt~~~~~~l~aa~a~~L~~~~~~~~~~~~~~~g~ 272 (493)
T 4hvm_A 206 -GGDGG--PVGPPETSRLRVPGSRWQALTEPGGPL----------GGNGSLAMAALTAWWLWTQGAGTGTDTGAGTGTGK 272 (493)
T ss_dssp -C---------CCEEEEEEEEHHHHHHHHCC----------------CHHHHHHHHHHHHHHHC----------------
T ss_pred -CCCCC--CCCCCeeEEEEcCHHHHHHHHHHHHHc----------CCCchHHHHHHHHHHHHHHHhhhcccccccCcCCC
Confidence 00011 111256678999999999999776543 478 9999999776666554110 234
Q ss_pred CeEEEEEeeccC
Q 042848 327 TTVTFWVPADCR 338 (339)
Q Consensus 327 ~~~~l~~avd~R 338 (339)
....+.+++++|
T Consensus 273 ~dv~~g~~~~gR 284 (493)
T 4hvm_A 273 DSLYLSTEVDLR 284 (493)
T ss_dssp CEEEEEEEEEHH
T ss_pred CCEEEEeeccCC
Confidence 678888888887
No 9
>1l5a_A Amide synthase, VIBH; nonribosomal peptide synthetase, NRPS condensation domain, vibriobactin, biosynthetic protein; 2.55A {Vibrio cholerae} SCOP: c.43.1.2 c.43.1.2
Probab=98.09 E-value=0.00028 Score=66.86 Aligned_cols=215 Identities=16% Similarity=0.095 Sum_probs=123.5
Q ss_pred HHHHHHHHHHhhhhccccCcEEeCCCCCCCceEEeeCCCceEEEEEEec-c-c----hhhhhcCCCCCCccccccCCCCC
Q 042848 77 LPKLKHSLSITLLHYLPVAGHLMWPPDAEKPAVYYFKDDGVSVTVAESN-A-D----LRRLLSSNNGTRRAVEFHPLAPR 150 (339)
Q Consensus 77 ~~~L~~sL~~~L~~~p~LaGrl~~~~~~g~~~i~~~~~~gv~f~~a~~d-~-~----~~~l~~~~~~p~~~~~~~~l~p~ 150 (339)
.++|++++.+++.+++.|--++...+ | .|. +...+.+.+.+.. . . +.++.. . ...
T Consensus 35 ~~~L~~A~~~lv~rh~~LRt~f~~~~--~--~v~--~~~~~~~~~~d~~~~~~~~~~~~~~~~--~---------~~~-- 95 (436)
T 1l5a_A 35 TTLLLRALHLTVSEIDLFRARFSAQG--E--LYW--HPFSPPIDYQDLSIHLEAEPLAWRQIE--Q---------DLQ-- 95 (436)
T ss_dssp HHHHHHHHHHHHHTCGGGGEEECTTC--C--EEE--CSSCCCCEEEECTTCTTHHHHHHHHHH--H---------HHT--
T ss_pred HHHHHHHHHHHHHHhheeEEEEEecC--C--eEC--CCcCCCccEEeCCCCCCHHHHHHHHHH--H---------Hhc--
Confidence 78999999999999999988887532 4 333 2333333333321 0 0 111111 0 000
Q ss_pred CCCCCCCCcEEEEEEEEecCCeEEEEEeeeccccchHHHHHHHHHHHHHHHhh-hccCCcCCCCCCCCCCCCCccccccc
Q 042848 151 LSISEDKAEVTAIQITLFPNQGFSICISVHHTVIDGKSAVLFIKSWAYLCKKL-QQQNVVVPVPSLLPESLTPCFDRSLI 229 (339)
Q Consensus 151 ~~~~~~~~Pll~vQvt~f~~GG~~L~~~~~H~v~Dg~g~~~fl~~Wa~~~r~~-~G~~~~~~~~~~l~~~~~P~~dr~~l 229 (339)
.+.+-...|++.+.+-....+...|.+.+||.++||.|+..|++.+.+.+.+. .|.. .+.. .+.+ ++.+
T Consensus 96 ~~fdl~~~pl~r~~l~~~~~~~~~l~~~~HH~i~Dg~S~~~l~~~l~~~Y~~~~~g~~--------~~~~-~~~~-~~~~ 165 (436)
T 1l5a_A 96 RSSTLIDAPITSHQVYRLSHSEHLIYTRAHHIVLDGYGMMLFEQRLSQHYQSLLSGQT--------PTAA-FKPY-QSYL 165 (436)
T ss_dssp SCCCCBTSCSCEEEEEEEETTEEEEEEEEETTTCCHHHHHHHHHHHHHHHHHHHHTCC--------CCCC-CCCH-HHHH
T ss_pred CCCCcCCCCCeEEEEEEEcCCEEEEEEeehhheecHhHHHHHHHHHHHHHHHHhcCCC--------CCCC-ccCH-HHHH
Confidence 00111355788777776667889999999999999999999999999999832 1322 1100 1111 1111
Q ss_pred c---C-CCCCchHHHHHHhh--hcCCCCCCCCcccccCCC--cCCCceEEEEEEeCHHHHHHHHHHhhhhcccCCCCCCC
Q 042848 230 K---D-PHGIDMVYVKQLMA--FTGSDPNTRSLKVTIPVA--KVDSNLVRKTFTLTREDLNKLKHKLVLVNKDQHPSKQL 301 (339)
Q Consensus 230 ~---~-p~~~~~~~~~~~~~--~~~~~~~~~~~~~~~p~~--~~~~~~~~~~f~fs~~~l~~LK~~a~~~~~~~~~~~~~ 301 (339)
. . ..........+|+. +.+.. ....+ |.. ..........+.++++..++|++.|...
T Consensus 166 ~~~~~~~~~~~~~~~~~~W~~~l~~~~---~~~~l--p~~~~~~~~~~~~~~~~l~~~~~~~l~~~a~~~---------- 230 (436)
T 1l5a_A 166 EEEAAYLTSHRYWQDKQFWQGYLREAP---DLTLT--SATYDPQLSHAVSLSYTLNSQLNHLLLKLANAN---------- 230 (436)
T ss_dssp HHHHHHHTSHHHHHHHHHHHHHHHTSC---CCCBC--CTTCCGGGCCEEEEEEECCHHHHHHHHHHHHHT----------
T ss_pred HHHHHhhccHhHHHHHHHHHHHhcCCC---CcccC--CCCCCCCcccceeeEEecCHHHHHHHHHHHHHh----------
Confidence 0 0 00000011122332 11100 11111 111 1112345678999999999999988753
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCCCCCeEEEEEeeccCC
Q 042848 302 HSSTFVLTCAHVFVCLVKARGEDANTTVTFWVPADCRS 339 (339)
Q Consensus 302 ~~St~dal~A~iW~~i~rAr~~~~~~~~~l~~avd~R~ 339 (339)
.+|.+.++.|.+-..+.+-- . +...+.+++++|.
T Consensus 231 ~~t~~~~l~aa~~~~L~~~~---g-~dv~ig~~~~~R~ 264 (436)
T 1l5a_A 231 QIGWPDALVALCALYLESAE---P-DAPWLWLPFMNRW 264 (436)
T ss_dssp TCCHHHHHHHHHHHHHHHHS---T-TCCEEEEEECCCT
T ss_pred CCCHHHHHHHHHHHHHHHhh---C-CceEEeeecccCC
Confidence 38899999997766666553 3 5688899999884
No 10
>2xhg_A Tyrocidine synthetase A; isomerase, nonribosomal peptide synthesis, cofactor-independ epimerization; 1.50A {Brevibacillus brevis}
Probab=97.99 E-value=0.0024 Score=60.91 Aligned_cols=258 Identities=14% Similarity=0.102 Sum_probs=137.1
Q ss_pred CccccCCcccccc-----cccCcccEEEEEecCCCCCCcchhhHHHHHHHHHHHhhhhccccCcEEeCCCCCCCceEEee
Q 042848 38 ATTLPLTYFDTYC-----FNLSPVDILLFYEIKDLTWDSFNSEILPKLKHSLSITLLHYLPVAGHLMWPPDAEKPAVYYF 112 (339)
Q Consensus 38 ~~~~~LS~lD~~~-----~~~~y~~~~~~f~~~~~~~~~~~~~~~~~L~~sL~~~L~~~p~LaGrl~~~~~~g~~~i~~~ 112 (339)
...+|||+..+.+ .........+.|.... .. ..++|+++|.+++.+++.|--++...+ |.+.-...
T Consensus 15 ~~~~pls~~Q~~~~~~~~~~~~~y~~~~~~~l~g-~l------d~~~L~~Al~~lv~rh~~LRt~f~~~~--~~~~q~v~ 85 (466)
T 2xhg_A 15 AGNVPLTPIQKWFFGKNFTNTGHWNQSSVLYRPE-GF------DPKVIQSVMDKIIEHHDALRMVYQHEN--GNVVQHNR 85 (466)
T ss_dssp CEECCCCHHHHHHHHTTCTTTTCBEEEEEEEETT-CC------CHHHHHHHHHHHHHHSGGGGEEEECGG--GCCEEEEC
T ss_pred CCCCCCCHHHHHHHhCCCCCcCcceeEEEEEcCC-CC------CHHHHHHHHHHHHHhChHhheEEecCC--Cceeeecc
Confidence 5577888765411 1111123344555543 22 388999999999999999998887543 44432222
Q ss_pred C--CCceEEEEEEec--cchhhhhcCCCCCCccccccCCCCCCCCCCCCCcEEEEEEEEecCCeEEEEEeeeccccchHH
Q 042848 113 K--DDGVSVTVAESN--ADLRRLLSSNNGTRRAVEFHPLAPRLSISEDKAEVTAIQITLFPNQGFSICISVHHTVIDGKS 188 (339)
Q Consensus 113 ~--~~gv~f~~a~~d--~~~~~l~~~~~~p~~~~~~~~l~p~~~~~~~~~Pll~vQvt~f~~GG~~L~~~~~H~v~Dg~g 188 (339)
+ ...+.+.+.+.. .+.++... .. .+.+. .+.+-...|++.+.+-.... +-.|-+.+||.++||.|
T Consensus 86 ~~~~~~~~~~~~d~~~~~~~~~~~~--~~------~~~~~--~~fdl~~~pl~r~~l~~~~~-~~~l~l~~HH~i~Dg~S 154 (466)
T 2xhg_A 86 GLGGQLYDFFSYNLTAQPDVQQAIE--AE------TQRLH--SSMNLQEGPLVKVALFQTLH-GDHLFLAIHHLVVDGIS 154 (466)
T ss_dssp CSSSCCCEEEEEECTTCSCHHHHHH--HH------HHHHH--TTCCTTTCCCEEEEEEEETT-EEEEEEEEEGGGCCHHH
T ss_pred ccccccceeEEEecCCcccHHHHHH--HH------HHHHH--hccCCCCCCeEEEEEEEcCC-CCEEEEEeeeeeechhh
Confidence 1 123344433321 11111100 00 00000 01112356888888877744 44477999999999999
Q ss_pred HHHHHHHHHHHHHhh-hccCCcCCCCCCCCCCCCCccccccc-------cCCC-CCchHHHHHHhhhcCCCCCCCCcccc
Q 042848 189 AVLFIKSWAYLCKKL-QQQNVVVPVPSLLPESLTPCFDRSLI-------KDPH-GIDMVYVKQLMAFTGSDPNTRSLKVT 259 (339)
Q Consensus 189 ~~~fl~~Wa~~~r~~-~G~~~~~~~~~~l~~~~~P~~dr~~l-------~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (339)
+..|++.+.+.+++. .|.. ..+++. ...+ ++.. .... .-...+..+... +.. +..+...
T Consensus 155 ~~~l~~el~~~Y~~~~~g~~------~~l~~~-~~~y-~~~~~~~~~~~~~~~~~~~~~~W~~~l~--~~~--~~~lp~~ 222 (466)
T 2xhg_A 155 WRILFEDLATGYAQALAGQA------ISLPEK-TDSF-QSWSQWLQEYANEADLLSEIPYWESLES--QAK--NVSLPKD 222 (466)
T ss_dssp HHHHHHHHHHHHHHHHTTCC------CCCCCC-CSCH-HHHHHHHHHHTTSHHHHTTHHHHHHHHH--HCC--CCCCCCS
T ss_pred HHHHHHHHHHHHHHHHcCCC------CCCCCC-CCCH-HHHHHHHHHHhcCccchhhhHHHHHhhc--cCC--cccCCcc
Confidence 999999999998732 1321 112110 1111 1110 0000 011112221111 000 0111000
Q ss_pred cCCC-cCCCceEEEEEEeCHHHHHHHHHHhhhhcccCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCCCeEEEEEeeccC
Q 042848 260 IPVA-KVDSNLVRKTFTLTREDLNKLKHKLVLVNKDQHPSKQLHSSTFVLTCAHVFVCLVKARGEDANTTVTFWVPADCR 338 (339)
Q Consensus 260 ~p~~-~~~~~~~~~~f~fs~~~l~~LK~~a~~~~~~~~~~~~~~~St~dal~A~iW~~i~rAr~~~~~~~~~l~~avd~R 338 (339)
.+.. ..........+.++++..++|++.+... ..+|.++++.|.+-..+.+--+ .....+.+++++|
T Consensus 223 ~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~---------~~~t~~~~llaa~~~~l~~~~~---~~dv~ig~~~~gR 290 (466)
T 2xhg_A 223 YEVTDCKQKSVRNMRIRLHPEETEQLLKHANQA---------YQTEINDLLLAALGLAFAEWSK---LAQIVIHLEGHGR 290 (466)
T ss_dssp SCCSSCBGGGEEEEEEECCHHHHHHHHHTGGGT---------TTCCHHHHHHHHHHHHHHHHHC---CSEEEEEEEECCC
T ss_pred ccccccccccceEEEEEcCHHHHHHHHHHhHHh---------hCCCHHHHHHHHHHHHHHHHhC---CCceEEEecCCCC
Confidence 0000 0112345678899999999999877532 2478999999987777766643 3568888999888
Q ss_pred C
Q 042848 339 S 339 (339)
Q Consensus 339 ~ 339 (339)
.
T Consensus 291 ~ 291 (466)
T 2xhg_A 291 E 291 (466)
T ss_dssp C
T ss_pred C
Confidence 4
No 11
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}
Probab=97.85 E-value=0.0019 Score=70.17 Aligned_cols=224 Identities=12% Similarity=0.095 Sum_probs=129.2
Q ss_pred HHHHHHHHHHhhhhccccCcEEeCCCCCCCceEEeeCCCceEEEEEEec-cc-------hhhhhcCCCCCCccccccCCC
Q 042848 77 LPKLKHSLSITLLHYLPVAGHLMWPPDAEKPAVYYFKDDGVSVTVAESN-AD-------LRRLLSSNNGTRRAVEFHPLA 148 (339)
Q Consensus 77 ~~~L~~sL~~~L~~~p~LaGrl~~~~~~g~~~i~~~~~~gv~f~~a~~d-~~-------~~~l~~~~~~p~~~~~~~~l~ 148 (339)
+++|++++.+++.+++.|--++...+.++-..+.. +...+.+.+.+.. .+ +.++.. .. ..
T Consensus 49 ~~~l~~A~~~lv~rH~~LRt~f~~~~~~~p~Q~v~-~~~~~~~~~~d~~~~~~~~~~~~~~~~~~--~~---------~~ 116 (1304)
T 2vsq_A 49 IKCLEESMNVIMDRYDVFRTVFIHEKVKRPVQVVL-KKRQFHIEEIDLTHLTGSEQTAKINEYKE--QD---------KI 116 (1304)
T ss_dssp HHHHHHHHHHHHHHCGGGGEEEECSSCSSCEEEEE-SCCCCCEEEEECTTSCHHHHHHHHHHHHH--HH---------HH
T ss_pred HHHHHHHHHHHHHhhhhceEEEEEcCCCeEEEEEC-CCCCCceEEEECCCCCchhHHHHHHHHHH--HH---------hc
Confidence 78999999999999999998887654312234433 2333444433321 11 111111 00 00
Q ss_pred CCCCCCCCCCcEEEEEEEEecCCeEEEEEeeeccccchHHHHHHHHHHHHHHHhh-hccCCcCCCCCCCCCCCCCccccc
Q 042848 149 PRLSISEDKAEVTAIQITLFPNQGFSICISVHHTVIDGKSAVLFIKSWAYLCKKL-QQQNVVVPVPSLLPESLTPCFDRS 227 (339)
Q Consensus 149 p~~~~~~~~~Pll~vQvt~f~~GG~~L~~~~~H~v~Dg~g~~~fl~~Wa~~~r~~-~G~~~~~~~~~~l~~~~~P~~dr~ 227 (339)
.+.+-...|++.+.+-....+...|.+.+||.++||.|+..|++.+.+.+++. .|.. ..+++ ..+..|-.
T Consensus 117 --~~fdl~~~pl~r~~l~~~~~~~~~l~~~~HHii~DG~S~~~l~~el~~~Y~~~~~g~~------~~l~~-~~~y~d~~ 187 (1304)
T 2vsq_A 117 --RGFDLTRDIPMRAAIFKKAEESFEWVWSYHHIILDGWCFGIVVQDLFKVYNALREQKP------YSLPP-VKPYKDYI 187 (1304)
T ss_dssp --HCCCTTTSCSEEEEEEEEETTEEEEEEEEEGGGCCHHHHHHHHHHHHHHHHHHHTTCC------CCCCC-CCCTHHHH
T ss_pred --CCCCCCCCCcEEEEEEEECCCcEEEEEecCceeechhhHHHHHHHHHHHHHHhhcCCC------CCCCC-cccHHHHH
Confidence 01112356889888888877899999999999999999999999999999832 1321 11221 11111100
Q ss_pred -cccCCCCCchHHHHHHhh--hcCCCCCCCCcccccCCC-cCCCceEEEEEEeCHHHHHHHHHHhhhhcccCCCCCCCCC
Q 042848 228 -LIKDPHGIDMVYVKQLMA--FTGSDPNTRSLKVTIPVA-KVDSNLVRKTFTLTREDLNKLKHKLVLVNKDQHPSKQLHS 303 (339)
Q Consensus 228 -~l~~p~~~~~~~~~~~~~--~~~~~~~~~~~~~~~p~~-~~~~~~~~~~f~fs~~~l~~LK~~a~~~~~~~~~~~~~~~ 303 (339)
-+.... .....+||. +.+.. .+..+... +.. ..........|.++++..++||+.|... .+
T Consensus 188 ~~~~~~~---~~~~~~yW~~~L~~~~-~~~~lp~~-~~~~~~~~~~~~~~~~l~~~~~~~L~~~a~~~----------~~ 252 (1304)
T 2vsq_A 188 KWLEKQD---KQASLRYWREYLEGFE-GQTTFAEQ-RKKQKDGYEPKELLFSPSEAETKAFTELAKSQ----------HT 252 (1304)
T ss_dssp HHHHTSC---HHHHHHHHHHHHTTCC-CCCTTTTT-CCCSSCCCCEEEEEECCCHHHHHHHHHHHHHT----------TC
T ss_pred HHHhcch---hhHHHHHHHHHhCCCC-ccccCCCC-CCccccccCcceEEEecCHHHHHHHHHHHHHc----------CC
Confidence 011111 111223332 11100 00111000 000 0112235577889999999999998754 37
Q ss_pred CHHHHHHHHHHHHHHHhcCCCCCCeEEEEEeeccCC
Q 042848 304 STFVLTCAHVFVCLVKARGEDANTTVTFWVPADCRS 339 (339)
Q Consensus 304 St~dal~A~iW~~i~rAr~~~~~~~~~l~~avd~R~ 339 (339)
|.+.+|.|.+-..+.|--+ .+...+..+|.+|.
T Consensus 253 T~~~vllaa~a~~L~r~tg---~~dvv~G~pvsgR~ 285 (1304)
T 2vsq_A 253 TLSTALQAVWSVLISRYQQ---SGDLAFGTVVSGRP 285 (1304)
T ss_dssp CHHHHHHHHHHHHHHHHHT---CSEEEEEEEECCCC
T ss_pred CHHHHHHHHHHHHHHHhcC---CCCEEEEEEeCCCC
Confidence 8999998876666666543 45788999999984
No 12
>3fot_A 15-O-acetyltransferase; fusarium head blight, trichothecene mycotoxin, deoxynivaleno toxin, fusarium graminearum, coenzyme A; 1.75A {Fusarium sporotrichioides} PDB: 3fp0_A*
Probab=97.30 E-value=0.07 Score=52.04 Aligned_cols=238 Identities=13% Similarity=0.081 Sum_probs=122.5
Q ss_pred hhHHHHHHHHHHHhhhhccccCcEEeCCCCCCCceEEeeC--CC-------ceEEEEEEeccchhhhhcC-------C-C
Q 042848 74 SEILPKLKHSLSITLLHYLPVAGHLMWPPDAEKPAVYYFK--DD-------GVSVTVAESNADLRRLLSS-------N-N 136 (339)
Q Consensus 74 ~~~~~~L~~sL~~~L~~~p~LaGrl~~~~~~g~~~i~~~~--~~-------gv~f~~a~~d~~~~~l~~~-------~-~ 136 (339)
+++.++||.+.-.+--++|-+|+++..++ ++.....|.. ++ .--|.+.+.+.+-+|+... . .
T Consensus 72 ~~l~~~lr~AW~~lR~~hP~iA~~v~~d~-~~~~~~~Y~~~~~~~~~~~Wl~~Tf~v~~~~~t~~e~~~~~~~~r~~~~~ 150 (519)
T 3fot_A 72 QNLKEMFELALLDARFEHPECACTVSWDD-EVPAIITYESPESNESARDWARGCIHVQPTAKSALDLWSEMEEGRAAAND 150 (519)
T ss_dssp HHHHHHHHHHHHHHHHHCGGGGCEEECCS-SSSCEEEEECCSSHHHHHHHHHHHEEEEECSCCHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHHHhhCCcceeEEeeCC-CCcccEEEecCCCHHHHHHHHHhcEEEeCCCCCHHHHHHhhhhhhccccc
Confidence 56788899999988888999999999773 2455554431 11 1125554444454444110 0 1
Q ss_pred C-CCccccccCCCCCCCCCCCCCcEEEEEEEEecCC--eEEEEEeeeccccchHHHHHHHHHHHHHHHhh--hccCCcCC
Q 042848 137 G-TRRAVEFHPLAPRLSISEDKAEVTAIQITLFPNQ--GFSICISVHHTVIDGKSAVLFIKSWAYLCKKL--QQQNVVVP 211 (339)
Q Consensus 137 ~-p~~~~~~~~l~p~~~~~~~~~Pll~vQvt~f~~G--G~~L~~~~~H~v~Dg~g~~~fl~~Wa~~~r~~--~G~~~~~~ 211 (339)
. |.....+.-+.+. ...+.| + .+ -.-|.+.+||.++||.|...|++.+=+..... +|...
T Consensus 151 ~~p~~~~~l~~v~~~---~~~~~~--------~-p~~~~~~lv~~~~H~~~DG~g~~~f~~~ll~~L~~~~~~~~~~--- 215 (519)
T 3fot_A 151 NTPSKSIELFLLSDV---STDSTP--------I-PQDATVEILFHSNHLFWDGIGCRKFVGDLFRLVGSYIGRSDSR--- 215 (519)
T ss_dssp CCCCCSCEEEEEESS---SSTTSC--------C-CTTCEEEEEEEECGGGCCHHHHHHHHHHHHHHHTTSTTC-CGG---
T ss_pred CCCccceEEEEEecc---cccccc--------C-CCCceEEEEEEeCceeEchHhHHHHHHHHHHHHHhhhccCCcc---
Confidence 1 1111111111111 011111 2 34 56778899999999999999999988877621 11100
Q ss_pred CCCCCC-----CCCCCccccccccCCCC-CchHH---HHHHhhhcCCCCCCCCcccccCCCcCCCceEEEEEEeCHHHHH
Q 042848 212 VPSLLP-----ESLTPCFDRSLIKDPHG-IDMVY---VKQLMAFTGSDPNTRSLKVTIPVAKVDSNLVRKTFTLTREDLN 282 (339)
Q Consensus 212 ~~~~l~-----~~~~P~~dr~~l~~p~~-~~~~~---~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~f~fs~~~l~ 282 (339)
....+. ..+.|... ..+..|.. ...+. ..++...- ......+.+ |....+..-....+.|++++.+
T Consensus 216 ~~~~~~~g~E~~~L~P~~e-~~~~~p~~~~~~e~~~~~~~~~~~~--~~~~~~~~~--P~~~~~~~~~~~~~~ls~~~t~ 290 (519)
T 3fot_A 216 EMKKIQWGQEIKNLSPPVV-DSLKLDINTLGSEFDDKCTEYTSAL--VANYKSRGM--KFQPGLALPRCVIHKLSADESI 290 (519)
T ss_dssp GSCCCCTTTTGGGSCCCTG-GGBSSCGGGCCHHHHHHHHHHHHHH--HHHHHSCCS--BCCCCCCCEEEEEEECCHHHHH
T ss_pred CCCcCCCCcccccCCcCHH-HHhCCCCCCCCHHHHHHHHHHHHHh--hcCCCcccC--CCCCCCCCcceEEEEcCHHHHH
Confidence 000000 01112111 11111111 11111 11221100 000001111 1111112334578999999999
Q ss_pred HHHHHhhhhcccCCCCCCCCCCHHHHHHHHHHHHHHHhcC---CCCCCeEEEEEeeccCC
Q 042848 283 KLKHKLVLVNKDQHPSKQLHSSTFVLTCAHVFVCLVKARG---EDANTTVTFWVPADCRS 339 (339)
Q Consensus 283 ~LK~~a~~~~~~~~~~~~~~~St~dal~A~iW~~i~rAr~---~~~~~~~~l~~avd~R~ 339 (339)
+|++.|.+... +.+|-..+|.|.+-.++.+... ........+..+||+|+
T Consensus 291 ~L~~~ck~~~~-------~g~Tvt~~l~Aa~~~al~~~~~~~~~~~~~~~~~~~pvnlR~ 343 (519)
T 3fot_A 291 DIVKAVKTRLG-------PGFTISHLTQAAIVLALLDHLKPNDLSDDEVFISPTSVDGRR 343 (519)
T ss_dssp HHHHHHHHHTC-------TTCCHHHHHHHHHHHHHHHHC----CCTTCCEEEEEEEECGG
T ss_pred HHHHHHHhcCC-------CCeeHHHHHHHHHHHHHHhhcCCcccCCCccEEEEeeeeccc
Confidence 99999987632 3589999998877777666422 12234688999999995
No 13
>3cla_A Type III chloramphenicol acetyltransferase; transferase (acyltransferase); HET: CLM; 1.75A {Escherichia coli} SCOP: c.43.1.1 PDB: 1cla_A* 2cla_A 4cla_A* 1cia_A 1qca_A*
Probab=82.81 E-value=1.2 Score=37.88 Aligned_cols=45 Identities=24% Similarity=0.391 Sum_probs=33.1
Q ss_pred CCcEEEEEEEEecCCe--EEEEEeeeccccchHHHHHHHHHHHHHHH
Q 042848 157 KAEVTAIQITLFPNQG--FSICISVHHTVIDGKSAVLFIKSWAYLCK 201 (339)
Q Consensus 157 ~~Pll~vQvt~f~~GG--~~L~~~~~H~v~Dg~g~~~fl~~Wa~~~r 201 (339)
..|++.+=-..-..|. +-|++++||.++||.-+..|++.+.+...
T Consensus 163 ~~PIi~~G~~~~~~~~~~m~lsls~DHRvvDG~~aa~Fl~~lk~~le 209 (213)
T 3cla_A 163 FAPIITMAKYQQEGDRLLLPLSVQVHHAVCDGFHVARFINRLQELCN 209 (213)
T ss_dssp CSCEEEEECCEEETTEEEEEEEEEEETTTCCHHHHHHHHHHHHHHHT
T ss_pred cccEEEeeEEEEECCeEEEEEEEEEcccccChHHHHHHHHHHHHHHH
Confidence 4588764211111233 67899999999999999999999998764
No 14
>2i9d_A Chloramphenicol acetyltransferase; structural genomics, PSI- protein structure initiative, midwest center for structural genomics; 2.30A {Bacteroides thetaiotaomicron}
Probab=82.11 E-value=1.3 Score=37.75 Aligned_cols=44 Identities=20% Similarity=0.332 Sum_probs=31.6
Q ss_pred CCcEEEEEEEEecCCe--EEEEEeeeccccchHHHHHHHHHHHHHH
Q 042848 157 KAEVTAIQITLFPNQG--FSICISVHHTVIDGKSAVLFIKSWAYLC 200 (339)
Q Consensus 157 ~~Pll~vQvt~f~~GG--~~L~~~~~H~v~Dg~g~~~fl~~Wa~~~ 200 (339)
..|++.+=-..-..|. +-|++++||.++||.-+..|++.+.+..
T Consensus 171 ~~PIi~~Gk~~~~~~r~~m~lsls~DHRvvDG~~aa~Fl~~lk~~l 216 (217)
T 2i9d_A 171 NYPLLNAGKAIIREGRLVMPIAMTIHHGFIDGHHLSLFYKKVEDFL 216 (217)
T ss_dssp SSCEEEECCCEEETTEEEEEEEEEEETTTCCHHHHHHHHHHHHHHH
T ss_pred eEEEEecceEEEECCcEEEEEEEEecchhhChHHHHHHHHHHHHHh
Confidence 4687763111111233 5789999999999999999999998764
No 15
>1q23_A Chloramphenicol acetyltransferase; CAT I, trimer, fusidic acid; HET: FUA; 2.18A {Escherichia coli} SCOP: c.43.1.1 PDB: 1noc_B 1pd5_A* 3u9b_A 3u9f_A*
Probab=81.63 E-value=1.4 Score=37.63 Aligned_cols=44 Identities=23% Similarity=0.335 Sum_probs=33.3
Q ss_pred CcEEEEEEEEecCCe--EEEEEeeeccccchHHHHHHHHHHHHHHH
Q 042848 158 AEVTAIQITLFPNQG--FSICISVHHTVIDGKSAVLFIKSWAYLCK 201 (339)
Q Consensus 158 ~Pll~vQvt~f~~GG--~~L~~~~~H~v~Dg~g~~~fl~~Wa~~~r 201 (339)
.|++.+=--.-..|. +-|++++||.++||.-...|++.+.+...
T Consensus 168 ~pIi~~G~~~~~~~r~~m~lsls~DHRvvDG~~aa~Fl~~lk~~le 213 (219)
T 1q23_A 168 APVFTMGKYYTQGDKVLMPLAIQVHHAVCDGFHVGRMLNELQQYCD 213 (219)
T ss_dssp SCEEEECCCEEETTEEEEEEEEEEETTTCCHHHHHHHHHHHHHHHH
T ss_pred eEEEecccEEEECCcEEEEEEEEEEchhhChHHHHHHHHHHHHHHh
Confidence 577764221111233 67899999999999999999999999886
No 16
>2kl8_A OR15; structural genomics, PSI-2, protein structure initiative, de novo protein, ferrodoxin fold; NMR {Artificial gene}
Probab=79.78 E-value=1.2 Score=29.77 Aligned_cols=37 Identities=14% Similarity=0.150 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHhhhhccccCcEEeCCCCCCCceEEee
Q 042848 76 ILPKLKHSLSITLLHYLPVAGHLMWPPDAEKPAVYYF 112 (339)
Q Consensus 76 ~~~~L~~sL~~~L~~~p~LaGrl~~~~~~g~~~i~~~ 112 (339)
.++.+..+|.+.+.+-..+||.+...-+++.++|.+.
T Consensus 11 dleafekalkemirqarkfagtvtytldgndleirit 47 (85)
T 2kl8_A 11 DLEAFEKALKEMIRQARKFAGTVTYTLDGNDLEIRIT 47 (85)
T ss_dssp SHHHHHHHHHHHHHHHTTTTCEEEEEECSSCEEEEEE
T ss_pred cHHHHHHHHHHHHHHHHhhcceEEEEecCCeeEEEEe
Confidence 4889999999999999999999988545467888875
No 17
>1dpb_A Dihydrolipoyl-transacetylase; dihydrolipoamide acetyltransferase; 2.50A {Azotobacter vinelandii} SCOP: c.43.1.1 PDB: 1dpd_A 1eaa_A 1eab_A* 1eac_A* 1ead_A* 1eae_A* 1eaf_A 1dpc_A
Probab=79.45 E-value=1.8 Score=37.59 Aligned_cols=29 Identities=28% Similarity=0.390 Sum_probs=27.3
Q ss_pred EEEEEeeeccccchHHHHHHHHHHHHHHH
Q 042848 173 FSICISVHHTVIDGKSAVLFIKSWAYLCK 201 (339)
Q Consensus 173 ~~L~~~~~H~v~Dg~g~~~fl~~Wa~~~r 201 (339)
+-|+++++|.|+||.-...|++.|.+...
T Consensus 208 m~lsls~DHRviDGa~aa~Fl~~lk~~le 236 (243)
T 1dpb_A 208 LPLSLSYDCRVINGAAAARFTKRLGDLLA 236 (243)
T ss_dssp EEEEEEEETTTSCHHHHHHHHHHHHHHHH
T ss_pred EEEEEEECcccccHHHHHHHHHHHHHHHh
Confidence 57999999999999999999999999886
No 18
>3rqc_A Probable lipoamide acyltransferase; alpha beta fold; 4.01A {Thermoplasma acidophilum dsm 1728}
Probab=79.44 E-value=1.5 Score=37.52 Aligned_cols=29 Identities=28% Similarity=0.440 Sum_probs=27.0
Q ss_pred EEEEEeeeccccchHHHHHHHHHHHHHHH
Q 042848 173 FSICISVHHTVIDGKSAVLFIKSWAYLCK 201 (339)
Q Consensus 173 ~~L~~~~~H~v~Dg~g~~~fl~~Wa~~~r 201 (339)
+-|+++++|.++||.-...|++.|.+...
T Consensus 187 m~lsls~DHRviDGa~aa~Fl~~l~~~le 215 (224)
T 3rqc_A 187 MYLSLSCDHRLIDGAVATRFIVDLKKVIE 215 (224)
T ss_dssp CCEEEEEETTTSCHHHHHHHHHHHHHHHT
T ss_pred EEEEEEeccceecHHHHHHHHHHHHHHHh
Confidence 45899999999999999999999999987
No 19
>1scz_A E2, dihydrolipoamide succinyltransferase; COA-dependent acyltransferase, CAT-like, alpha and beta (2 L mixed beta-sheeet of 6 strands; 2.20A {Escherichia coli} SCOP: c.43.1.1 PDB: 1e2o_A 1c4t_A
Probab=79.30 E-value=1.8 Score=37.26 Aligned_cols=29 Identities=28% Similarity=0.479 Sum_probs=27.2
Q ss_pred EEEEEeeeccccchHHHHHHHHHHHHHHH
Q 042848 173 FSICISVHHTVIDGKSAVLFIKSWAYLCK 201 (339)
Q Consensus 173 ~~L~~~~~H~v~Dg~g~~~fl~~Wa~~~r 201 (339)
+-|+++++|.++||.-...|++.+.+...
T Consensus 196 m~lsls~DHRviDGa~aa~Fl~~lk~~le 224 (233)
T 1scz_A 196 MYLALSYDHRLIDGRESVGFLVTIKELLE 224 (233)
T ss_dssp EEEEEEEETTTCCHHHHHHHHHHHHHHHH
T ss_pred EEEEEEEcceeechHHHHHHHHHHHHHHh
Confidence 56999999999999999999999999886
No 20
>3b8k_A PDCE2;, dihydrolipoyllysine-residue acetyltransferase; central beta-sheet surrounded by five alpha-helices; 8.80A {Homo sapiens}
Probab=78.96 E-value=1.6 Score=37.71 Aligned_cols=29 Identities=21% Similarity=0.458 Sum_probs=27.5
Q ss_pred EEEEEeeeccccchHHHHHHHHHHHHHHH
Q 042848 173 FSICISVHHTVIDGKSAVLFIKSWAYLCK 201 (339)
Q Consensus 173 ~~L~~~~~H~v~Dg~g~~~fl~~Wa~~~r 201 (339)
+-|+++++|.++||.-...|++.+.+...
T Consensus 204 m~lsls~DHRviDGa~aa~Fl~~lk~~le 232 (239)
T 3b8k_A 204 MSVTLSCDHRVVDGAVGAQWLAEFRKYLE 232 (239)
T ss_dssp EEEEECCCCCSSCHHHHHHHHHHHHHHHH
T ss_pred EEEEEEEcceeechHHHHHHHHHHHHHHh
Confidence 78999999999999999999999999876
No 21
>2ii3_A Lipoamide acyltransferase component of branched-C alpha-keto acid dehydrogenase complex...; cubic core, HOMO trimer, oxidized COA-bound form; HET: CAO; 2.17A {Bos taurus} PDB: 2ihw_A* 2ii4_A* 2ii5_A*
Probab=78.37 E-value=2 Score=37.75 Aligned_cols=29 Identities=24% Similarity=0.510 Sum_probs=27.1
Q ss_pred EEEEEeeeccccchHHHHHHHHHHHHHHH
Q 042848 173 FSICISVHHTVIDGKSAVLFIKSWAYLCK 201 (339)
Q Consensus 173 ~~L~~~~~H~v~Dg~g~~~fl~~Wa~~~r 201 (339)
+-|+++++|.|+||.-...|++.|.+.+.
T Consensus 224 m~lsls~DHRviDGa~aa~Fl~~lk~~Le 252 (262)
T 2ii3_A 224 MNVSWSADHRIIDGATVSRFSNLWKSYLE 252 (262)
T ss_dssp EEEEEEEETTTCCHHHHHHHHHHHHHHHH
T ss_pred eEEEEEECcceecHHHHHHHHHHHHHHHh
Confidence 56899999999999999999999999886
No 22
>4hhu_A OR280; engineered protein, PSI-biology, structural genomi unknown function; HET: AE4 PG4; 2.00A {Synthetic construct}
Probab=75.28 E-value=2.9 Score=31.59 Aligned_cols=36 Identities=14% Similarity=0.196 Sum_probs=31.0
Q ss_pred HHHHHHHHHHhhhhccccCcEEeCCCCCCCceEEee
Q 042848 77 LPKLKHSLSITLLHYLPVAGHLMWPPDAEKPAVYYF 112 (339)
Q Consensus 77 ~~~L~~sL~~~L~~~p~LaGrl~~~~~~g~~~i~~~ 112 (339)
++.|..+|.+.+.+-..+||.+...-++++++|.+.
T Consensus 94 lea~ekalkemirqarkfagtvtytl~gn~l~i~it 129 (170)
T 4hhu_A 94 LEALEKALKEMIRQARKFAGTVTYTLSGNRLVIVIT 129 (170)
T ss_dssp HHHHHHHHHHHHHHHHHTTCEEEEEECSSEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHhhcceEEEEEeCCEEEEEEe
Confidence 889999999999999999999988555467888875
No 23
>3mae_A 2-oxoisovalerate dehydrogenase E2 component, dihydrolipamide acetyltransferase; 2-oxoacid dehydrogenases acyltransferase; 2.50A {Listeria monocytogenes}
Probab=74.27 E-value=3 Score=36.45 Aligned_cols=29 Identities=24% Similarity=0.527 Sum_probs=27.3
Q ss_pred EEEEEeeeccccchHHHHHHHHHHHHHHH
Q 042848 173 FSICISVHHTVIDGKSAVLFIKSWAYLCK 201 (339)
Q Consensus 173 ~~L~~~~~H~v~Dg~g~~~fl~~Wa~~~r 201 (339)
+-|+++++|.|+||.-+..|++.|.+...
T Consensus 210 m~lsLs~DHRviDGa~aa~Fl~~lk~~Le 238 (256)
T 3mae_A 210 VNLCLSIDHRILDGLLAGKFLQAIKANVE 238 (256)
T ss_dssp EEEEEEEETTTCCHHHHHHHHHHHHHHHH
T ss_pred EEEEEEEccccccHHHHHHHHHHHHHHHh
Confidence 45999999999999999999999999997
No 24
>3l60_A Branched-chain alpha-keto acid dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.00A {Mycobacterium tuberculosis} SCOP: c.43.1.0
Probab=73.23 E-value=3.3 Score=36.03 Aligned_cols=29 Identities=21% Similarity=0.377 Sum_probs=27.2
Q ss_pred EEEEEeeeccccchHHHHHHHHHHHHHHH
Q 042848 173 FSICISVHHTVIDGKSAVLFIKSWAYLCK 201 (339)
Q Consensus 173 ~~L~~~~~H~v~Dg~g~~~fl~~Wa~~~r 201 (339)
+-|+++++|.|+||.-...|++.|.+...
T Consensus 205 m~lsLs~DHRviDGa~aa~Fl~~lk~~Le 233 (250)
T 3l60_A 205 MTLTCVFDHRVVDGAQVAQFMCELRDLIE 233 (250)
T ss_dssp EEEEEEEETTTCCHHHHHHHHHHHHHHHH
T ss_pred eEEEEEecccccCHHHHHHHHHHHHHHHh
Confidence 46899999999999999999999999987
No 25
>4hhu_A OR280; engineered protein, PSI-biology, structural genomi unknown function; HET: AE4 PG4; 2.00A {Synthetic construct}
Probab=73.17 E-value=2.9 Score=31.59 Aligned_cols=36 Identities=14% Similarity=0.196 Sum_probs=30.7
Q ss_pred HHHHHHHHHHhhhhccccCcEEeCCCCCCCceEEee
Q 042848 77 LPKLKHSLSITLLHYLPVAGHLMWPPDAEKPAVYYF 112 (339)
Q Consensus 77 ~~~L~~sL~~~L~~~p~LaGrl~~~~~~g~~~i~~~ 112 (339)
++.|..+|.+.+.+-..+||.+...-++++++|.+.
T Consensus 13 lea~ekalkemirqarkfagtvtytl~gn~l~i~it 48 (170)
T 4hhu_A 13 LEALEKALKEMIRQARKFAGTVTYTLSGNRLVIVIT 48 (170)
T ss_dssp HHHHHHHHHHHHHHHHHTTCEEEEEEETTEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHhhcceEEEEEeCCEEEEEEe
Confidence 889999999999999999999987544467888875
No 26
>2xl1_A Arginine attenuator peptide; translation, antibiotic, ribosome, cytomegalovirus; NMR {Neurospora crassa}
Probab=54.57 E-value=11 Score=19.59 Aligned_cols=19 Identities=11% Similarity=0.009 Sum_probs=15.9
Q ss_pred CCCCHHHHHHHHHHHHHHH
Q 042848 301 LHSSTFVLTCAHVFVCLVK 319 (339)
Q Consensus 301 ~~~St~dal~A~iW~~i~r 319 (339)
+-+++.|-|+-|+||++..
T Consensus 6 svftsqdylsdhlwralna 24 (26)
T 2xl1_A 6 SVFTSQDYLSDHLWRALNA 24 (26)
T ss_pred ceeecHHHHHHHHHHHHhc
Confidence 4578899999999999864
No 27
>3dva_I Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; oxidoreductase, multienzyme complex; HET: TPW; 2.35A {Bacillus stearothermophilus} PDB: 3dv0_I* 3duf_I* 1b5s_A 1lab_A 1lac_A 1w3d_A
Probab=51.61 E-value=3.1 Score=39.29 Aligned_cols=29 Identities=24% Similarity=0.390 Sum_probs=0.0
Q ss_pred EEEEEeeeccccchHHHHHHHHHHHHHHH
Q 042848 173 FSICISVHHTVIDGKSAVLFIKSWAYLCK 201 (339)
Q Consensus 173 ~~L~~~~~H~v~Dg~g~~~fl~~Wa~~~r 201 (339)
+-|+++++|.|+||.-...|++.|.+++.
T Consensus 391 m~lsls~DHRviDG~~aa~Fl~~lk~~Le 419 (428)
T 3dva_I 391 LALSLSFDHRMIDGATAQKALNHIKRLLS 419 (428)
T ss_dssp -----------------------------
T ss_pred EEEEEEecccccchHHHHHHHHHHHHHHh
Confidence 35899999999999999999999999886
No 28
>1x93_A Hypothetical protein HP0222; JHP0208, transcription, regula METJ, MNT, PArg, COPG, REPA; NMR {Helicobacter pylori} SCOP: a.43.1.3
Probab=50.13 E-value=29 Score=21.68 Aligned_cols=23 Identities=13% Similarity=0.137 Sum_probs=19.9
Q ss_pred EEEEEeCHHHHHHHHHHhhhhcc
Q 042848 271 RKTFTLTREDLNKLKHKLVLVNK 293 (339)
Q Consensus 271 ~~~f~fs~~~l~~LK~~a~~~~~ 293 (339)
...|+||+++-+.|++.|.++..
T Consensus 3 ~Vs~Y~SkEey~~L~klA~eE~e 25 (55)
T 1x93_A 3 AVSLYFSDEQYQKLEKMANEEEE 25 (55)
T ss_dssp EEEEEECHHHHHHHHHHHHHTTS
T ss_pred eEEEEecHHHHHHHHHHHHHHHH
Confidence 46799999999999999987653
No 29
>2k1o_A Putative; repressor, transcriptional regulator, D binding, ribbon-helix-helix, HP0564, JHP0511, unknown funct regulation; NMR {Helicobacter pylori}
Probab=35.23 E-value=91 Score=20.18 Aligned_cols=42 Identities=17% Similarity=0.037 Sum_probs=32.6
Q ss_pred ceEEEEEEeCHHHHHHHHHHhhhhcccCCCCCCCCCCHHHHHHHHHHHHHHHhcCC
Q 042848 268 NLVRKTFTLTREDLNKLKHKLVLVNKDQHPSKQLHSSTFVLTCAHVFVCLVKARGE 323 (339)
Q Consensus 268 ~~~~~~f~fs~~~l~~LK~~a~~~~~~~~~~~~~~~St~dal~A~iW~~i~rAr~~ 323 (339)
+.-...|+|++++-+.|.+.|.++.. .+..+|=|.|.++...
T Consensus 14 ~~~~Vs~Y~SkEey~~L~klA~eE~e--------------SV~sfIKR~IlK~l~y 55 (66)
T 2k1o_A 14 RNFSVTFYLSKEEHDVLRRLADEEVE--------------SVNSFVKRHILKTIIY 55 (66)
T ss_dssp CCEEEEEEEEHHHHHHHHHHHHTTCS--------------CHHHHHHHHHHHHHCS
T ss_pred cceEEEEEecHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHH
Confidence 44567899999999999999987653 4566777888777643
No 30
>2xt6_A 2-oxoglutarate decarboxylase; lyase, KDH, KGD; HET: TPP; 2.74A {Mycobacterium smegmatis}
Probab=30.73 E-value=34 Score=36.32 Aligned_cols=29 Identities=17% Similarity=0.322 Sum_probs=26.5
Q ss_pred EEEEEeeeccccchHHHHHHHHHHHHHHH
Q 042848 173 FSICISVHHTVIDGKSAVLFIKSWAYLCK 201 (339)
Q Consensus 173 ~~L~~~~~H~v~Dg~g~~~fl~~Wa~~~r 201 (339)
+-|+++++|.|+||.-...|++.+.+...
T Consensus 192 m~lsls~DHRviDGa~aa~FL~~lk~~Le 220 (1113)
T 2xt6_A 192 ITLTSTYDHRIIQGAESGDFLRTIHQLLL 220 (1113)
T ss_dssp EEEEEEEETTTCCHHHHHHHHHHHHHHTT
T ss_pred eEEEEEECcceechHHHHHHHHHHHHHHh
Confidence 78999999999999999999999887765
Done!