Your job contains 1 sequence.
>042849
MGSRGKLLFDLNEPPAEDDEENDRIFSSQPQKALPSANPHTSELFVASAAPQGIINNNAF
SHAPSVSGFQPFNRAKAAQGHGVEVEPKKAEDQNRRVASSSSKPGNGEDIKAASSSVPGS
ENAAADEREEGEWSDAEGSVDAYASNLLNEQGKASQGQGVSEVVDTATGVDIKVPESSQD
GSNSHGVLGSDQDPSDQKRNRSRHSEANIKGEKSVDGQEEPCLLPKQREIKGTEASHTTK
GANNLGKRKIDQQKEAMLGKKRNRQTVFLNLEDVKQAGSLKTSTPRRQNPPVVTRTVKEA
RTIPSPAERGGEKQSQAINKDQKQYDVSSCNEGGTSVEALEPKPECNGDMNFGLPGSTDP
KLGTKKHPPAKKQTATANLYQDTSVERLIREVTNEKFWHHPVVHVPPIRTLLRIVTLKGH
GKIYDASEESELQCVPGRFESVEEYVRVFEPLLFEECRAQLYSTWEELTETGSRDTHVMV
RIRNIERRERGWYDVIVLPVNECKWSFKEGDVAVLSTPRPGSVRGKRNHSLAAEDDEEAE
VSGRVAGTVRRHFPVDARDPPGAILHFYVGDSYDPSSSMDDDDHILRKLQPKGIWYLTVL
GSLATTQREYVALHAFCRLNSQMQTAILKPSPEHFPKYEHQTPTMPECFTQNFIDHLHRT
FNGPQLAAIQWAAIHTAAGTSSGMTKSPWPFTLVQGPPGTGKTHTVWGMLNVIHLVQYQH
YYNSLLKKLAPESYKQPNESNSDNVSMGSIDEVLQNMDQNLLRTLPKLCPKPRMLVCAPS
NAATDELLTRVLDRGFIDGEMKVYRPDVARVGVDSQTRAAQAVSVERRTEQLLVKSREEV
IGWMHNLKGREAVLSQQIANLQRELNAAAFAVRSQGSVGVDPDVLMARDQNRDTLLQNLA
AAVENRDKVLVEMSRFHILEGRFRPGSNFNLEEARASLEASFANEAEIVFTTVSSSGRKL
FSRLTHGFDMVVIDEAAQASEVGVLPPLSLGAARCVLGGGSSAAPCNSYQQGSRHLDVQ
The BLAST search returned 2 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 042849
(1019 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2126480 - symbol:AT4G30100 species:3702 "Arabi... 2490 1.0e-258 1
TAIR|locus:2059088 - symbol:AT2G19120 "AT2G19120" species... 2464 5.8e-256 1
DICTYBASE|DDB_G0274399 - symbol:DDB_G0274399 "DNA2/NAM7 h... 141 1.2e-27 5
DICTYBASE|DDB_G0285243 - symbol:DDB_G0285243 "putative sp... 198 3.4e-20 5
TAIR|locus:2130384 - symbol:MAA3 "MAGATAMA 3" species:370... 126 1.5e-17 5
POMBASE|SPBC29A10.10c - symbol:SPBC29A10.10c "tRNA-splici... 132 1.8e-14 4
POMBASE|SPAC6G9.10c - symbol:sen1 "ATP-dependent 5' to 3'... 209 1.8e-14 3
UNIPROTKB|G4NIZ8 - symbol:MGG_02784 "DNA-binding protein ... 191 2.7e-12 3
SGD|S000004422 - symbol:SEN1 "Presumed helicase and subun... 181 1.9e-10 4
UNIPROTKB|F1S0U6 - symbol:SETX "Uncharacterized protein" ... 104 3.0e-09 5
ZFIN|ZDB-GENE-070402-1 - symbol:setx "senataxin" species:... 118 5.2e-09 4
MGI|MGI:2443480 - symbol:Setx "senataxin" species:10090 "... 101 1.3e-08 6
DICTYBASE|DDB_G0268660 - symbol:DDB_G0268660 "DNA2/NAM7 h... 101 8.1e-08 5
UNIPROTKB|F1PHA4 - symbol:SETX "Uncharacterized protein" ... 102 1.5e-07 5
DICTYBASE|DDB_G0268662 - symbol:DDB_G0268662 "DNA2/NAM7 h... 99 3.0e-07 5
UNIPROTKB|E1BAS6 - symbol:SETX "Uncharacterized protein" ... 104 3.3e-07 7
UNIPROTKB|D4AEB3 - symbol:Setx "Protein Setx" species:101... 100 3.7e-07 5
UNIPROTKB|Q7Z333 - symbol:SETX "Probable helicase senatax... 102 7.5e-07 5
DICTYBASE|DDB_G0268924 - symbol:DDB_G0268924 "Helicase SE... 91 2.5e-06 5
DICTYBASE|DDB_G0268914 - symbol:DDB_G0268914 species:4468... 94 5.6e-06 6
TAIR|locus:2166183 - symbol:AT5G37160 species:3702 "Arabi... 105 1.7e-05 4
DICTYBASE|DDB_G0288923 - symbol:upf1 "regulator of nonsen... 85 0.00015 4
SGD|S000004685 - symbol:NAM7 "ATP-dependent RNA helicase ... 90 0.00017 5
CGD|CAL0003335 - symbol:SEN1 species:5476 "Candida albica... 134 0.00032 3
FB|FBgn0035842 - symbol:CG7504 species:7227 "Drosophila m... 78 0.00039 4
ZFIN|ZDB-GENE-031112-4 - symbol:stm "starmaker" species:7... 125 0.00045 1
SGD|S000002577 - symbol:SEC7 "Guanine nucleotide exchange... 105 0.00049 2
UNIPROTKB|F1M3I2 - symbol:RGD1562799 "Protein RGD1562799"... 123 0.00064 1
ZFIN|ZDB-GENE-050522-205 - symbol:nefma "neurofilament, m... 125 0.00069 1
SGD|S000000978 - symbol:ECM32 "DNA dependent ATPase/DNA h... 88 0.00070 3
MGI|MGI:97314 - symbol:Nefm "neurofilament, medium polype... 124 0.00088 1
>TAIR|locus:2126480 [details] [associations]
symbol:AT4G30100 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] [GO:0009506 "plasmodesma"
evidence=IDA] GO:GO:0009506 EMBL:CP002687 EMBL:AL161576
GO:GO:0004519 eggNOG:COG1112 EMBL:AL078464 KO:K10706
InterPro:IPR026852 PANTHER:PTHR10887:SF27 HOGENOM:HOG000084788
ProtClustDB:CLSN2683158 IPI:IPI00535923 PIR:T08986
RefSeq:NP_194739.1 UniGene:At.31859 ProteinModelPortal:Q9SZW3
SMR:Q9SZW3 STRING:Q9SZW3 PaxDb:Q9SZW3 PRIDE:Q9SZW3
EnsemblPlants:AT4G30100.1 GeneID:829133 KEGG:ath:AT4G30100
TAIR:At4g30100 InParanoid:Q9SZW3 PhylomeDB:Q9SZW3
ArrayExpress:Q9SZW3 Genevestigator:Q9SZW3 Uniprot:Q9SZW3
Length = 1311
Score = 2490 (881.6 bits), Expect = 1.0e-258, P = 1.0e-258
Identities = 564/991 (56%), Positives = 667/991 (67%)
Query: 53 GIINNNAFSHAPSVSGFQPFNRAKAAQGHGVEVEPKKAEDQ--NRRVASSSSKPGNGEDI 110
GI N N F+ P V+ N + +A + P ++D N RV S +S +
Sbjct: 21 GIDNVN-FNQQPQVT-IPSSNPSSSA----LLATPSSSQDNVNNNRVFSHASTVSGFQPF 74
Query: 111 KAASSSVPGSENAAADEREEGEWSDAEGSVDAYASNLLNEQGKASQGQGVSEVVDTATGV 170
V A ER+ E S E V + + N+ G + +G E ++
Sbjct: 75 VRP---VAAQHTDVAVERKVDEGSLEEAKVTSL--KVPNDVGAPEREEG--EWTESEVPA 127
Query: 171 DIKVPESSQDGS---NSHGVLGSD--QDPSDQKRNRSRHSEANIKGEKSVDGQEEPCLLP 225
+ V SS + +G LG D D + QK+N + SE++ K S+D +E L
Sbjct: 128 NDNVHSSSDYSTVTEKDNGTLGLDINSDSALQKKNVNHISESSGKDSGSIDSPQEQGLTV 187
Query: 226 KQREIKGTEASHTTKGANNLGKRKIDQQKEAMLGKKRNRQTVFLNLEDVKQAGSLKTSTP 285
+ RE KG EASH K AN KRK+D QKE MLGKKR+RQT+FLNL+DV+QAG +KT+TP
Sbjct: 188 RPRETKGVEASHAIKCANTTVKRKMDHQKETMLGKKRHRQTMFLNLDDVRQAGPIKTTTP 247
Query: 286 RRQN-P-PVVTRTVKEARTIPSPAERGGEKQSQAINKDQKQYDVSSCNEGGTSVEALEPK 343
RRQN P PVVTRTV+E+R P AE+ G + +DQK D+ + GG E EPK
Sbjct: 248 RRQNFPQPVVTRTVRESRAGPPTAEQAGGVPGHVVYRDQKPIDIPN---GGIHPETSEPK 304
Query: 344 PECNGDMNFGLPGST-------DP----------KLGTKKHPPAKKQTATAN-------L 379
E NG+ G G T P + G+ K P +Q + + L
Sbjct: 305 LESNGESQSGSAGKTRRMNGEAGPSAEATSTSVSRQGSWKQPINSRQLKSGHSSNRQVPL 364
Query: 380 YQDTSVERLIREVTNEKF--WHHPVVHVPPIR--TLLRIVTLKGHGKIYDASEESELQCV 435
TS + + N+KF + + + ++ R++ + K + E+++LQ V
Sbjct: 365 CSQTSADS---KFGNKKFTSFKKQATNSTQYQDTSVERLLREVTNEKFWHHPEDTDLQSV 421
Query: 436 PGRFESVEEYVRVFEPLLFEECRAQLYSTWEELTETGSRDTHVMVRIRNIERRERGWYDV 495
P RFES++EYVRVFEPLLFEECRAQLYSTWEEL E S ++ VRI+ IERRERGWYDV
Sbjct: 422 PERFESMDEYVRVFEPLLFEECRAQLYSTWEELAEANS---YMKVRIKFIERRERGWYDV 478
Query: 496 IVLPVNECKWSFKEGDVAVLSTPRPGSVRGKRNHSLAAEDDEEAEVSGRVAGTVRRHFPV 555
I+ VNECKW+FKEGDVAVLS P P S G+ H DD GRVAGTVRR+ PV
Sbjct: 479 ILNSVNECKWAFKEGDVAVLSNPVPES-EGE--H-----DDV-----GRVAGTVRRYIPV 525
Query: 556 DARDPPGAILHFYVGXXXXXXXXXXXXXHILRKLQPKGIWYLTVLGSLATTQREYVALHA 615
D RDP GAILHFYVG HILRKL+PK IW+LTVLGS+ATTQREYVALHA
Sbjct: 526 DTRDPHGAILHFYVGDAYDSGSKIDDN-HILRKLKPKEIWHLTVLGSIATTQREYVALHA 584
Query: 616 FCRLNSQMQTAILKPSPEHFPKYEHQTPTMPECFTQNFIDHLHRTFNGPQLXXXXXXXXX 675
F +LN QMQ AILKPSPE FP Y QTPT+P+CFT +F HLHR+FN PQL
Sbjct: 585 FSQLNPQMQNAILKPSPEQFPNYGEQTPTVPDCFTPSFAGHLHRSFNAPQLAAIHWAAMH 644
Query: 676 XXXGTSSGMTKS-PWPFTLVQGPPGTGKTHTVWGMLNVIHLVQYQHYYNSLLKKLAPESY 734
GTSSG+ + PWPFTLVQGPPGTGKTHTVWGMLNVIHLVQYQ YY SLLKKLAPESY
Sbjct: 645 TAAGTSSGVKRQDPWPFTLVQGPPGTGKTHTVWGMLNVIHLVQYQQYYTSLLKKLAPESY 704
Query: 735 KQPNESNSDNVSMGSIDEVLQNMDQNLLRTLPKLCPKPRMLVCAPSNAATDELLTRVLDR 794
KQ NES+SDN+ GSIDEVLQNMDQNL RTLPKLC KPRMLVCAPSNAATDELL+RVLDR
Sbjct: 705 KQVNESSSDNIVSGSIDEVLQNMDQNLFRTLPKLCAKPRMLVCAPSNAATDELLSRVLDR 764
Query: 795 GFIDGEMKVYRPDVARVGVDSQTRAAQAVSVERRTEQLLVKSREEVIGWMHNLKGREAVL 854
GFIDGEM+VYRPDVARVGVD+QT+AAQAVSVERR++ LL KSREE++G +HNL+ R+A L
Sbjct: 765 GFIDGEMRVYRPDVARVGVDTQTKAAQAVSVERRSDLLLAKSREEILGHIHNLRVRDAQL 824
Query: 855 SQQIANLQRELNAAAFAVRSQGSVGVDPDVLMARDQNRDTLLQNLAAAVENRDKVLVEMS 914
SQ IA L+REL AAAFA RSQGSVGVDPDVLM RDQ RD +LQ L+A VE RDK LVEMS
Sbjct: 825 SQDIAGLKRELTAAAFANRSQGSVGVDPDVLMVRDQTRDAMLQRLSAVVEARDKDLVEMS 884
Query: 915 RFHILEGRFRPGSNFNLEEARASLEASFANEAEIVFTTVSSSGRKLFSRLTHGFDMVVID 974
R I+EG+FR G++FNLEEARASLEASFANEAEIVFTTVSSSGRKLFSRLTHGFDMVVID
Sbjct: 885 RLLIVEGKFRAGTSFNLEEARASLEASFANEAEIVFTTVSSSGRKLFSRLTHGFDMVVID 944
Query: 975 EAAQASEVGVLPPLSLGAARCVLGGGSSAAP 1005
EAAQASEVGVLPPL+LGAARCVL G P
Sbjct: 945 EAAQASEVGVLPPLALGAARCVLVGDPQQLP 975
Score = 469 (170.2 bits), Expect = 5.2e-40, Sum P(2) = 5.2e-40
Identities = 165/504 (32%), Positives = 229/504 (45%)
Query: 1 MGSRGKLLFXXXXXXXXXXXXXXRI-FSSQPQKALPSANPHTSELFVASAAPQGIINNN- 58
M S GKLLF + F+ QPQ +PS+NP +S L ++ Q +NNN
Sbjct: 1 MASEGKLLFDLNELPTEDDDGIDNVNFNQQPQVTIPSSNPSSSALLATPSSSQDNVNNNR 60
Query: 59 AFSHAPSVSGFQPFNRAKAAQGHGVEVEPKKAEDQNRRVASSSSKPGNGEDIKAASSSVP 118
FSHA +VSGFQPF R AAQ V VE K E G+ E+ K S VP
Sbjct: 61 VFSHASTVSGFQPFVRPVAAQHTDVAVERKVDE-------------GSLEEAKVTSLKVP 107
Query: 119 GSENAAADEREEGEWSDAE--GSVDAYASN---LLNEQGKASQGQGVSEVVDTATGVDIK 173
+ A EREEGEW+++E + + ++S+ + E+ + G ++ D+A
Sbjct: 108 N--DVGAPEREEGEWTESEVPANDNVHSSSDYSTVTEKDNGTLGLDINS--DSALQKK-N 162
Query: 174 VPESSQDGSNSHGVLGSDQD------PSDQKRNRSRHSE--ANIKGEKSVDGQEEPCLLP 225
V S+ G + S Q+ P + K + H+ AN ++ +D Q+E +L
Sbjct: 163 VNHISESSGKDSGSIDSPQEQGLTVRPRETKGVEASHAIKCANTTVKRKMDHQKET-MLG 221
Query: 226 KQREIKGTEAS-HTTKGANNLGKRKIDQQKEAMLGKKRNRQTVFLNLEDVKQAGSLKTST 284
K+R + + + A + +Q R + +QAG +
Sbjct: 222 KKRHRQTMFLNLDDVRQAGPIKTTTPRRQNFPQPVVTRTVRESRAGPPTAEQAGGVPGHV 281
Query: 285 PRRQNPPV-VTRTVKEARTIPSPAERGGEKQSQAINKDQKQYDVS--SCNEGGTSV---- 337
R P+ + T E GE QS + K ++ + S TSV
Sbjct: 282 VYRDQKPIDIPNGGIHPETSEPKLESNGESQSGSAGKTRRMNGEAGPSAEATSTSVSRQG 341
Query: 338 ---EALEPKPECNG-DMNFGLP----GSTDPKLGTKKHPPAKKQTATANLYQDTSVERLI 389
+ + + +G N +P S D K G KK KKQ + YQDTSVERL+
Sbjct: 342 SWKQPINSRQLKSGHSSNRQVPLCSQTSADSKFGNKKFTSFKKQATNSTQYQDTSVERLL 401
Query: 390 REVTNEKFWHHPVVHVPPIRTLLRIVTLKGHGKIYDASEESELQCVPGRFESVEEYVRVF 449
REVTNEKFWHHP E+++LQ VP RFES++EYVRVF
Sbjct: 402 REVTNEKFWHHP--------------------------EDTDLQSVPERFESMDEYVRVF 435
Query: 450 EPLLFEECRAQLYSTWEELTETGS 473
EPLLFEECRAQLYSTWEEL E S
Sbjct: 436 EPLLFEECRAQLYSTWEELAEANS 459
Score = 46 (21.3 bits), Expect = 5.2e-40, Sum P(2) = 5.2e-40
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 533 AEDDEEAEVSGRVA-GTVRRHFPVDARDPPG 562
+EDD++ + G RR VD DPPG
Sbjct: 1256 SEDDKKLSTTTFPRNGNSRRENSVDDSDPPG 1286
>TAIR|locus:2059088 [details] [associations]
symbol:AT2G19120 "AT2G19120" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] [GO:0009506 "plasmodesma" evidence=IDA] GO:GO:0009506
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0004386 GO:GO:0004519
eggNOG:COG1112 EMBL:AC002392 KO:K10706 InterPro:IPR026852
PANTHER:PTHR10887:SF27 IPI:IPI00542366 PIR:T00533
RefSeq:NP_179502.1 UniGene:At.52824 ProteinModelPortal:O64476
SMR:O64476 PaxDb:O64476 PRIDE:O64476 EnsemblPlants:AT2G19120.1
GeneID:816429 KEGG:ath:AT2G19120 TAIR:At2g19120
HOGENOM:HOG000084788 InParanoid:O64476 OMA:DWAALIS PhylomeDB:O64476
ProtClustDB:CLSN2683158 ArrayExpress:O64476 Genevestigator:O64476
Uniprot:O64476
Length = 1090
Score = 2464 (872.4 bits), Expect = 5.8e-256, P = 5.8e-256
Identities = 523/811 (64%), Positives = 601/811 (74%)
Query: 211 GEKSV-DGQEEPCLLPKQREIKGTEASHTTKGANNLGKRKIDQQKEAMLGKKRNRQTVFL 269
GE SV D +EP L+ KQRE+KG EAS+ K AN KRK+DQ KEAMLGKKRNRQT FL
Sbjct: 25 GEGSVRDELQEPGLMVKQREVKGVEASYAVKCANTTVKRKMDQHKEAMLGKKRNRQTRFL 84
Query: 270 NLEDVKQAGSLKTSTPRRQNPPVVTRTVKEARTIPSPAERGGEKQSQAINKDQKQYDVSS 329
NLEDVKQAG++ TSTPRRQN T A + PAE GGE QSQ+ +++ K D S
Sbjct: 85 NLEDVKQAGTVNTSTPRRQNFAQAVPTRSSA--VNPPAEHGGESQSQS-HQNLKSVDFPS 141
Query: 330 CNEGGTSVEALEPKPECNGDMNFGLPGSTDPKLGTKKHPPAK-------KQTA---TANL 379
GG E+ E K E NG+ GL G +L + P A+ +Q + AN+
Sbjct: 142 T--GGIHSESAEQKTESNGESYSGLLGKPR-RLNRDEEPSAEGMGTSVSRQASWKQPANI 198
Query: 380 YQDTSVERLIREVT-NEKFWHHPVVHVPPIR--TLLRIVTLKGHGKIYDASEESELQCVP 436
Q S R+V+ +++ + P + ++ R++ + K + E++EL+ VP
Sbjct: 199 RQPKSGHSSSRKVSYSQRSFKKPATSSTQYQDTSVERLIREVTNEKFWRHPEDTELRSVP 258
Query: 437 GRFESVEEYVRVFEPLLFEECRAQLYSTWEELTETGSRDTHVMVRIRNIERRERGWYDVI 496
RFES+EEYVRVFEPLLFEECRAQLYSTW EL E +T+V VRI++IERRERGWYDVI
Sbjct: 259 ERFESMEEYVRVFEPLLFEECRAQLYSTWVELAEA---NTYVKVRIKSIERRERGWYDVI 315
Query: 497 VLPVNECKWSFKEGDVAVLSTPRPGSVRGKRNHSLAAEDDEEAEVSGRVAGTVRRHFPVD 556
+ +N CKW+FKEGDVAVLSTP P E DE+ E +GRVAGTVRRH PVD
Sbjct: 316 LNSLNGCKWAFKEGDVAVLSTPLP-------------ESDEDHEDAGRVAGTVRRHIPVD 362
Query: 557 ARDPPGAILHFYVGXXXXXXXXXXXXXHILRKLQPKGIWYLTVLGSLATTQREYVALHAF 616
RDP GA LHFYVG HILRKL+P+ IW+LTVLGSLATTQREYVALHAF
Sbjct: 363 TRDPRGATLHFYVGNSGGTGSKIDDS-HILRKLKPQDIWHLTVLGSLATTQREYVALHAF 421
Query: 617 CRLNSQMQTAILKPSPEHFPKYEHQTPTMPECFTQNFIDHLHRTFNGPQLXXXXXXXXXX 676
RLN QMQ AIL PSPE FP YE QTP P+CFT +F+DHLHR+FN PQL
Sbjct: 422 SRLNPQMQNAILNPSPEQFPSYEEQTPATPDCFTTSFVDHLHRSFNAPQLAAIHWAAMHT 481
Query: 677 XXGTSSGMTKS-PWPFTLVQGPPGTGKTHTVWGMLNVIHLVQYQHYYNSLLKKLAPESYK 735
GTSSG+ K PWPFTLVQGPPGTGKTHTVWGMLNVIHLVQYQ YY SLLKKLAPE+Y
Sbjct: 482 AAGTSSGVKKQEPWPFTLVQGPPGTGKTHTVWGMLNVIHLVQYQQYYTSLLKKLAPETYN 541
Query: 736 QPNE-SNSDNVSMGSIDEVLQNMDQNLLRTLPKLCPKPRMLVCAPSNAATDELLTRVLDR 794
Q NE S+SDN+ GSIDEVLQNMD NL RTLPKLC KPRMLVCAPSNAATDELL+RVLDR
Sbjct: 542 QANECSSSDNILSGSIDEVLQNMDHNLFRTLPKLCAKPRMLVCAPSNAATDELLSRVLDR 601
Query: 795 GFIDGEMKVYRPDVARVGVDSQTRAAQAVSVERRTEQLLVKSREEVIGWMHNLKGREAVL 854
GFIDGEM+VYRPDVARVGVDSQ+RAAQAVSVERR++QLL SR+E++ M NL+ +E +
Sbjct: 602 GFIDGEMRVYRPDVARVGVDSQSRAAQAVSVERRSDQLLAISRDEILRHMRNLRLQETQI 661
Query: 855 SQQIANLQRELNAAAFAVRSQGSVGVDPDVLMARDQNRDTLLQNLAAAVENRDKVLVEMS 914
SQ IA L+RELNAAAFA RSQGSVGVDP+VL++RDQ RD LLQ+LAA VE RDKVLVE+S
Sbjct: 662 SQNIAGLKRELNAAAFATRSQGSVGVDPEVLISRDQKRDALLQHLAAVVEARDKVLVEIS 721
Query: 915 RFHILEGRFRPGSNFNLEEARASLEASFANEAEIVFTTVSSSGRKLFSRLTHGFDMVVID 974
R I+EG+FR G+NFNLEEARASLEASFANEAEIVFTTVSSSGRKLFSRLTHGFDMVVID
Sbjct: 722 RLLIVEGKFRAGNNFNLEEARASLEASFANEAEIVFTTVSSSGRKLFSRLTHGFDMVVID 781
Query: 975 EAAQASEVGVLPPLSLGAARCVLGGGSSAAP 1005
EAAQASEVGVLPPL+LGAARCVL G P
Sbjct: 782 EAAQASEVGVLPPLALGAARCVLVGDPQQLP 812
>DICTYBASE|DDB_G0274399 [details] [associations]
symbol:DDB_G0274399 "DNA2/NAM7 helicase family
protein" species:44689 "Dictyostelium discoideum" [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0003674 "molecular_function" evidence=ND] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] InterPro:IPR003593 SMART:SM00382
dictyBase:DDB_G0274399 GO:GO:0005524 GO:GO:0005634
EMBL:AAFI02000012 GO:GO:0004386 eggNOG:COG1112 RefSeq:XP_644230.1
ProteinModelPortal:Q86AS0 EnsemblProtists:DDB0237968 GeneID:8619659
KEGG:ddi:DDB_G0274399 OMA:LIMISLH Uniprot:Q86AS0
Length = 967
Score = 141 (54.7 bits), Expect = 1.2e-27, Sum P(5) = 1.2e-27
Identities = 32/80 (40%), Positives = 48/80 (60%)
Query: 926 GSNFNLEEARASLEASFANEAEIVFTTVSSSGRKLFSRLTHGFDMVVIDEAAQASEVGVL 985
GS+ + ++ +S+ +EA+IV TT+S SG L +++ GFD+V+IDEAAQA E L
Sbjct: 544 GSSRSTQDT-SSIRTLVLDEADIVATTLSFSGASLLTKMAGGFDIVIIDEAAQAVETSTL 602
Query: 986 PPLSLGAARCVLGGGSSAAP 1005
P+ G + VL G P
Sbjct: 603 IPIQHGCKKVVLVGDPKQLP 622
Score = 132 (51.5 bits), Expect = 1.2e-27, Sum P(5) = 1.2e-27
Identities = 40/127 (31%), Positives = 60/127 (47%)
Query: 420 HGKIYDASE----ESELQCVPGRFESVEEYVRVFEPLLFEECRAQLYSTWEELTETGSRD 475
H +DAS+ E EL+ V F + E+Y+ +EPLLFEECRAQL + EE E
Sbjct: 47 HILTWDASDLSPKEKELKPVKVSFNNEEDYITTYEPLLFEECRAQLERSIEE-GEKDDTS 105
Query: 476 THVMVRIRNIERRERGWYDVIVLPVNECKWSFKEGDVAVLSTPRPGSVRGKRNHSLAAED 535
+ R+R I +V+ N + F + D+ ++S P V G +D
Sbjct: 106 EPTLSRVRYISEVNDFLVVGLVMAENVNIFQFHDNDLIMISLHHPLIVFGMDEDEEMTDD 165
Query: 536 DEEAEVS 542
++ A S
Sbjct: 166 EDTAPTS 172
Score = 116 (45.9 bits), Expect = 1.2e-27, Sum P(5) = 1.2e-27
Identities = 25/72 (34%), Positives = 45/72 (62%)
Query: 771 KPRMLVCAPSNAATDELLTRVLDRGFIDGEMKVYRPDVARVGVDSQTRAAQAVSVER--R 828
K R+L+CAPSN A DE+++R++ G ++ + + Y P++ RVG S + ++VS++ R
Sbjct: 461 KRRILLCAPSNGAVDEIVSRLIRDGLLNADGRKYNPNLVRVGPGSHSDV-ESVSLDYMVR 519
Query: 829 TEQLLVKSREEV 840
Q L+ S +
Sbjct: 520 CRQQLMNSNSAI 531
Score = 90 (36.7 bits), Expect = 1.2e-27, Sum P(5) = 1.2e-27
Identities = 14/22 (63%), Positives = 20/22 (90%)
Query: 692 TLVQGPPGTGKTHTVWGMLNVI 713
TL+QGPPGTGKTH + G+++V+
Sbjct: 353 TLIQGPPGTGKTHVILGLISVL 374
Score = 64 (27.6 bits), Expect = 1.2e-27, Sum P(5) = 1.2e-27
Identities = 13/35 (37%), Positives = 24/35 (68%)
Query: 595 WYLTVLGSLATTQREYVALHAFCRLNSQMQTAILK 629
W+ T L +L+T QRE+ AL+ C ++ M+T +++
Sbjct: 278 WWTTKLCNLSTLQREFAALYQ-CSQSNFMKTLMMR 311
Score = 38 (18.4 bits), Expect = 2.7e-11, Sum P(3) = 2.7e-11
Identities = 8/23 (34%), Positives = 14/23 (60%)
Query: 241 GANNLGKRKIDQQKEAMLGKKRN 263
G NNLG + + +E + +KR+
Sbjct: 386 GGNNLGDHLL-KDRELSMAEKRD 407
>DICTYBASE|DDB_G0285243 [details] [associations]
symbol:DDB_G0285243 "putative splicing endonuclease"
species:44689 "Dictyostelium discoideum" [GO:0008150
"biological_process" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0003674 "molecular_function" evidence=ND]
dictyBase:DDB_G0285243 EMBL:AAFI02000076 KO:K10706
InterPro:IPR024481 Pfam:PF12726 RefSeq:XP_002649136.1
ProteinModelPortal:C7G036 EnsemblProtists:DDB0252844 GeneID:8625002
KEGG:ddi:DDB_G0285243 OMA:DSINMIF Uniprot:C7G036
Length = 2069
Score = 198 (74.8 bits), Expect = 3.4e-20, Sum P(5) = 3.4e-20
Identities = 67/251 (26%), Positives = 112/251 (44%)
Query: 761 LLRTLPKLCPKPRMLVCAPSNAATDELLTRVLDRGFIDGEMKVYRPDVARVGVDSQTR-A 819
+L + K P++LVCAPSNAA DE+ R+ G ID ++P + R+G S +
Sbjct: 1415 VLTNIEKSHSDPKILVCAPSNAAVDEIALRIKKDGLIDKNGNKFKPVICRIGNQSHIHPS 1474
Query: 820 AQAVSVERRTEQLLVKSREEVIGWMHNLKGREAVLSQQIANLQRELNAAAFAVR-SQGSV 878
Q +SVE ++G K + + ++ + Q++ N ++ + V
Sbjct: 1475 VQDISVESL-----------ILG---EYKDKNSAIANED---QKKENTRLKIIKIKEKQV 1517
Query: 879 GVDPDV--LMAR-DQNRDTLLQNLAAAVE-NRDKVLVEMSRFHILEGRFRPGSNFNLEEA 934
+D + L R Q D L+N + R+K ++ E RF
Sbjct: 1518 EIDKQIKDLAERLKQQEDNKLRNEITKLNYTREKYNNDLKLAKDEERRFHE----QYSNT 1573
Query: 935 RASLEASFANEAEIVFTTVSSSGRKLFSRLTHGFDMVVIDEAAQASEVGVLPPLSLGAAR 994
+ +L + ++I+ +T+S SG T FD+V++DEAAQA E+ L PL +
Sbjct: 1574 KRNLYINIIGRSQIILSTLSGSGYDYLFTATKNFDLVIVDEAAQAVELSTLIPLRHDVKK 1633
Query: 995 CVLGGGSSAAP 1005
C+L G P
Sbjct: 1634 CILVGDPQQLP 1644
Score = 126 (49.4 bits), Expect = 3.4e-20, Sum P(5) = 3.4e-20
Identities = 66/243 (27%), Positives = 101/243 (41%)
Query: 393 TNEKFWHHPVVHVPPIRTLLRIVTLKGHGKIYDASEESELQCVPGRFESVEEYVRVFEPL 452
T +K H I +L +I+ K D SEL+ VPG F+ ++ Y+ +F+PL
Sbjct: 1118 TKDKVPAHMEDFTTKIDSLHKIILDWVPTKFADDPPMSELKPVPGTFDDLKHYIDIFQPL 1177
Query: 453 LFEECRAQLYSTWEELTETGSRDTHVMVRIRNIERRERGWYDV-IVLPVNECKWSFKEGD 511
L EE RAQ+ +E +D V + N + E G+ DV LP E +
Sbjct: 1178 LIEEFRAQVIRNLDE--GVNFQD----VTVDNFIQ-ENGFIDVDFELPPKEND-ILLDDF 1229
Query: 512 VAVLSTPRPGSVRGKRNHSLAAEDDEEAEVSGRVAGTVRRHFPVDAR---DPPGAILHFY 568
V V+ PR GS + A D G+V R P + D G
Sbjct: 1230 VLVIQPPRNGSPLNE-----AYRDPNLFSAFGKVERK-DRIIPKGGKGNFDQNGGGGGGG 1283
Query: 569 VGXXXXXXXXXXXXXHILRKLQPKG-IWYLTVLGSLATTQREYVALHAFCRLNSQMQTAI 627
G ++++ G IW + + SL+T REY+ALH ++ + T+I
Sbjct: 1284 RGFIIKVRFYKASSSTFVQQICKIGNIWNIQKVTSLSTISREYMALHMVGKI--PLGTSI 1341
Query: 628 LKP 630
+ P
Sbjct: 1342 ISP 1344
Score = 81 (33.6 bits), Expect = 3.4e-20, Sum P(5) = 3.4e-20
Identities = 15/26 (57%), Positives = 20/26 (76%)
Query: 691 FTLVQGPPGTGKTHTVWGMLNVIHLV 716
F+L+QGPPGTGKT T+ +L+V V
Sbjct: 1390 FSLLQGPPGTGKTKTILSLLSVFTTV 1415
Score = 40 (19.1 bits), Expect = 3.4e-20, Sum P(5) = 3.4e-20
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 355 PGSTDPKLGTKKHPPAKKQTATAN 378
P +T P + TK PPA T T++
Sbjct: 964 PTNT-PLVVTKPKPPATTTTTTSS 986
Score = 39 (18.8 bits), Expect = 3.4e-20, Sum P(5) = 3.4e-20
Identities = 9/23 (39%), Positives = 12/23 (52%)
Query: 30 PQKALPSANPHTSELFVASAAPQ 52
PQ L + + SELF+ A Q
Sbjct: 362 PQSLLAEISSYISELFLRKAFTQ 384
Score = 38 (18.4 bits), Expect = 2.0e-09, Sum P(2) = 2.0e-09
Identities = 8/41 (19%), Positives = 20/41 (48%)
Query: 713 IHLVQYQHYYNSLLKKLAPESYKQPNESNSDNVSMGSIDEV 753
I + + Q Y + + + + Q N+ N D++ I+++
Sbjct: 219 ISMDEIQSVYPVIERLITDLQFNQDNKLNPDSIFSEEINDI 259
>TAIR|locus:2130384 [details] [associations]
symbol:MAA3 "MAGATAMA 3" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM] [GO:0009553 "embryo sac development"
evidence=IMP] [GO:0009875 "pollen-pistil interaction" evidence=IMP]
[GO:0010183 "pollen tube guidance" evidence=IMP] PROSITE:PS51198
GO:GO:0005524 GO:GO:0005634 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0004386 GO:GO:0009553 eggNOG:COG1112 InterPro:IPR014001
SMART:SM00487 EMBL:Z97339 GO:GO:0010183 EMBL:AL161542 EMBL:EU915246
IPI:IPI00522212 PIR:E71420 RefSeq:NP_193292.3 UniGene:At.33168
ProteinModelPortal:B6SFA4 SMR:B6SFA4 PaxDb:B6SFA4 PRIDE:B6SFA4
EnsemblPlants:AT4G15570.1 GeneID:827233 KEGG:ath:AT4G15570
GeneFarm:2417 TAIR:At4g15570 HOGENOM:HOG000030627 KO:K10706
OMA:TIMREFT PhylomeDB:B6SFA4 ProtClustDB:CLSN2680970
Genevestigator:B6SFA4 GO:GO:0009875 InterPro:IPR026852
PANTHER:PTHR10887:SF27 Uniprot:B6SFA4
Length = 818
Score = 126 (49.4 bits), Expect = 1.5e-17, Sum P(5) = 1.5e-17
Identities = 29/69 (42%), Positives = 38/69 (55%)
Query: 937 SLEASFANEAEIVFTTVSSSGRKLFSRLTHGFDMVVIDEAAQASEVGVLPPLSLGAARCV 996
S+ + EA IVF T+S SG L ++ GFD+V+IDEAAQA E L PL+ +
Sbjct: 453 SIRTAILEEAAIVFATLSFSGSALLAKSNRGFDVVIIDEAAQAVEPATLIPLATRCKQVF 512
Query: 997 LGGGSSAAP 1005
L G P
Sbjct: 513 LVGDPKQLP 521
Score = 113 (44.8 bits), Expect = 1.5e-17, Sum P(5) = 1.5e-17
Identities = 23/59 (38%), Positives = 36/59 (61%)
Query: 773 RMLVCAPSNAATDELLTRVLDRGFIDGEMKVYRPDVARVGVDSQTRAAQAVSVERRTEQ 831
R+LVCAPSN+A DE++ R+L G D + Y P + R+G+ + A +VS++ Q
Sbjct: 376 RVLVCAPSNSALDEIVLRLLSSGLRDENAQTYTPKIVRIGLKAHHSVA-SVSLDHLVAQ 433
Score = 80 (33.2 bits), Expect = 1.5e-17, Sum P(5) = 1.5e-17
Identities = 14/23 (60%), Positives = 17/23 (73%)
Query: 691 FTLVQGPPGTGKTHTVWGMLNVI 713
F L+QGPPGTGKT T+ +L I
Sbjct: 275 FVLIQGPPGTGKTQTILSILGAI 297
Score = 79 (32.9 bits), Expect = 1.5e-17, Sum P(5) = 1.5e-17
Identities = 14/33 (42%), Positives = 22/33 (66%)
Query: 429 ESELQCVPGRFESVEEYVRVFEPLLFEECRAQL 461
+ +L V ++ V++Y FEPLLFEE +AQ+
Sbjct: 44 KEKLNVVKNTYKDVDDYFETFEPLLFEEVKAQI 76
Score = 43 (20.2 bits), Expect = 1.2e-10, Sum P(5) = 1.2e-10
Identities = 11/37 (29%), Positives = 17/37 (45%)
Query: 847 LKGREAVLSQQIANLQRELNAAAFAVRSQGSVGVDPD 883
LK +V S + +L + +A QG+ G D D
Sbjct: 416 LKAHHSVASVSLDHLVAQKRGSAIDKPKQGTTGTDID 452
Score = 41 (19.5 bits), Expect = 1.5e-17, Sum P(5) = 1.5e-17
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 592 KGIWYLTVLGSLATTQREYVALHAFCRL 619
K ++ L + G L+T REY+AL + L
Sbjct: 197 KRVFSLKLCG-LSTIIREYIALRSVSSL 223
>POMBASE|SPBC29A10.10c [details] [associations]
symbol:SPBC29A10.10c "tRNA-splicing endonuclease
positive effector (predicted)" species:4896 "Schizosaccharomyces
pombe" [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISO] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISO;IDA] [GO:0006364 "rRNA processing"
evidence=ISO] [GO:0006369 "termination of RNA polymerase II
transcription" evidence=IEA] [GO:0008033 "tRNA processing"
evidence=ISO] [GO:0016180 "snRNA processing" evidence=ISO]
[GO:0035649 "Nrd1 complex" evidence=ISO] [GO:0043144 "snoRNA
processing" evidence=ISO] InterPro:IPR024714 PomBase:SPBC29A10.10c
GO:GO:0005524 GO:GO:0005634 EMBL:CU329671 GO:GO:0008033
eggNOG:COG1112 GO:GO:0006364 GO:GO:0004004 GO:GO:0006369
GO:GO:0043144 GO:GO:0016180 KO:K10706 GO:GO:0035649
InterPro:IPR024481 PANTHER:PTHR10887:SF164 Pfam:PF12726
OrthoDB:EOG4MPMZ6 PIR:T40065 RefSeq:NP_596055.1
ProteinModelPortal:O94387 EnsemblFungi:SPBC29A10.10c.1
GeneID:2540523 KEGG:spo:SPBC29A10.10c NextBio:20801650
Uniprot:O94387
Length = 1944
Score = 132 (51.5 bits), Expect = 1.8e-14, Sum P(4) = 1.8e-14
Identities = 39/134 (29%), Positives = 66/134 (49%)
Query: 872 VRSQGSVGVDPDVLMARDQNRDTLLQNLAAAVENRDKVLVEMSRFHILEGRFRPGSNFNL 931
++ + S+ D + + +N L L + ++ ++E S + E R R +N NL
Sbjct: 1418 IKKRDSLREDLEKFRSTGKNSSILEAQLREITKQKN--MLEQSLDDMRE-RQR-STNRNL 1473
Query: 932 EEARASLEASFANEAEIVFTTVSSSGRKLFSRLTHGFDMVVIDEAAQASEVGVLPPLSLG 991
+ + ++ EA+IV T+S+SG +L F V+IDEAAQA E+ + PL G
Sbjct: 1474 DVLKKQIQNQLLQEADIVCATLSASGHELLLNAGLTFRTVIIDEAAQAVELSSIIPLKYG 1533
Query: 992 AARCVLGGGSSAAP 1005
CV+ G + P
Sbjct: 1534 CESCVMVGDPNQLP 1547
Score = 111 (44.1 bits), Expect = 1.8e-14, Sum P(4) = 1.8e-14
Identities = 37/106 (34%), Positives = 54/106 (50%)
Query: 737 PNESNSDNVSMGSIDEVLQNMDQNLLRTLP---KLCPKPRMLVCAPSNAATDELLTRVLD 793
P + +G I VL + Q L +P + K ++L+CAPSNAA DE+L R+
Sbjct: 1294 PPGTGKTKTILGMIGAVLTSSSQGLQFNVPGQTRKTSKNKILICAPSNAAIDEILLRI-K 1352
Query: 794 RGFIDGEMKVYRPDVARVGV-DSQTRAAQAVSVERRTEQLLVKSRE 838
G D E + P V RVG DS + A+ ++E EQ+ +K E
Sbjct: 1353 AGVYDHEGIKFFPKVIRVGFGDSISVHAKEFTLE---EQM-IKQME 1394
Score = 91 (37.1 bits), Expect = 6.8e-12, Sum P(5) = 6.8e-12
Identities = 15/23 (65%), Positives = 19/23 (82%)
Query: 691 FTLVQGPPGTGKTHTVWGMLNVI 713
FTL+QGPPGTGKT T+ GM+ +
Sbjct: 1288 FTLIQGPPGTGKTKTILGMIGAV 1310
Score = 89 (36.4 bits), Expect = 1.8e-14, Sum P(4) = 1.8e-14
Identities = 22/66 (33%), Positives = 35/66 (53%)
Query: 406 PPIRTLLRIVTLKGHGKIYDASEES--ELQCVPGRF--ESVEEYVRVFEPLLFEECRAQL 461
P ++ +++ G + D+ S E+QCV +F Y +VF+P+LF EC AQ+
Sbjct: 1057 PDVQEFYKVIL--GWNPLADSFSASNVEMQCVQAKFTYNDSNAYEKVFKPMLFHECWAQV 1114
Query: 462 YSTWEE 467
S EE
Sbjct: 1115 KSAVEE 1120
Score = 52 (23.4 bits), Expect = 1.8e-14, Sum P(4) = 1.8e-14
Identities = 21/81 (25%), Positives = 37/81 (45%)
Query: 165 DTATGVDIKVPESSQDGSNSHGVLGSDQDPSDQKRNRSRHSEANIKGEKSVDGQEEPCLL 224
D G+ K+PES+ SN H +L + + NR+ N+ KS QE +
Sbjct: 868 DQTIGIAKKLPESNISTSN-HFLLPPKAISASKAINRNAQKSQNLNFLKSK--QETTQRI 924
Query: 225 PKQREIKGTEA-SHTTKGANN 244
+ ++ T A +H ++ N+
Sbjct: 925 RESAKVPRTSAGNHLSEKLNS 945
Score = 38 (18.4 bits), Expect = 6.8e-12, Sum P(5) = 6.8e-12
Identities = 9/43 (20%), Positives = 23/43 (53%)
Query: 725 LLKKLAPESYKQPNESNSDNVSMGSIDEVLQNMDQNLLRTLPK 767
++K++ + K+ E+N+ + + D +++ D +L L K
Sbjct: 1389 MIKQMELTNLKKDQEANNSSDTRKKYDSIIKKRD-SLREDLEK 1430
>POMBASE|SPAC6G9.10c [details] [associations]
symbol:sen1 "ATP-dependent 5' to 3' DNA/RNA helicase
Sen1" species:4896 "Schizosaccharomyces pombe" [GO:0005524 "ATP
binding" evidence=IC] [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0006364 "rRNA processing" evidence=ISO] [GO:0006369
"termination of RNA polymerase II transcription" evidence=ISO]
[GO:0008033 "tRNA processing" evidence=ISO] [GO:0008094
"DNA-dependent ATPase activity" evidence=IDA] [GO:0008186
"RNA-dependent ATPase activity" evidence=IDA] [GO:0016180 "snRNA
processing" evidence=ISO] [GO:0032575 "ATP-dependent 5'-3' RNA
helicase activity" evidence=IDA] [GO:0035649 "Nrd1 complex"
evidence=ISO] [GO:0043141 "ATP-dependent 5'-3' DNA helicase
activity" evidence=IDA] [GO:0043144 "snoRNA processing"
evidence=ISO] InterPro:IPR024714 PomBase:SPAC6G9.10c GO:GO:0005524
GO:GO:0005634 EMBL:CU329670 GenomeReviews:CU329670_GR GO:GO:0006397
GO:GO:0008033 eggNOG:COG1112 GO:GO:0006364 GO:GO:0006369
GO:GO:0043144 GO:GO:0043141 GO:GO:0016180 KO:K10706 GO:GO:0035649
PIR:T39072 RefSeq:NP_594119.1 ProteinModelPortal:Q92355
EnsemblFungi:SPAC6G9.10c.1 GeneID:2541556 KEGG:spo:SPAC6G9.10c
OrthoDB:EOG4BCHWF NextBio:20802652 GO:GO:0032575 InterPro:IPR024481
PANTHER:PTHR10887:SF164 Pfam:PF12726 Uniprot:Q92355
Length = 1687
Score = 209 (78.6 bits), Expect = 1.8e-14, Sum P(3) = 1.8e-14
Identities = 71/238 (29%), Positives = 121/238 (50%)
Query: 771 KPRMLVCAPSNAATDELLTRVLDRGFIDGEMKVYRPDVARVG-VDSQTRAAQAVSVERRT 829
K ++L+CAPSNAA DE+L R L RGF+ + Y P V R+G ++ + + +S+E +T
Sbjct: 1191 KQQILLCAPSNAAVDEVLLR-LKRGFLLENGEKYIPRVVRIGNPETINVSVRDLSLEYQT 1249
Query: 830 EQLLVKSREEVIGWMHNLKGREAVLSQQIANLQRELNAAAFAVRSQGSVGVDPDVLMARD 889
E+ L++ + I + +L Q++ R+ F Q ++ + +ARD
Sbjct: 1250 EKQLLEVNQGAID-LGSL--------QELTRW-RD----TFYDCIQKIEELEKQIDVARD 1295
Query: 890 QNRDTLLQNLAAAVENR--DKVLVEMSRFHILEGRFRPGSNFNLEEARASLEASFANEAE 947
DT ++L ++N+ +K L E + F +L +A + + +A+
Sbjct: 1296 VAEDT--KSLGKELQNKINEKNLAEQKVEELQSQSFTKNKEVDLLRKKA--QKAILKQAD 1351
Query: 948 IVFTTVSSSGRKLFSRLTHGFDMVVIDEAAQASEVGVLPPLSLGAARCVLGGGSSAAP 1005
+V T+S SG L + + F V+IDEAAQA E+ + PL GA +C+L G + P
Sbjct: 1352 VVCATLSGSGHDLVAHSSLNFSTVIIDEAAQAVELDTIIPLRYGAKKCILVGDPNQLP 1409
Score = 73 (30.8 bits), Expect = 1.8e-14, Sum P(3) = 1.8e-14
Identities = 12/26 (46%), Positives = 20/26 (76%)
Query: 439 FESVEEYVRVFEPLLFEECRAQLYST 464
F++VE Y+ V +P++F EC +Q+ ST
Sbjct: 951 FKTVEHYMEVLQPMIFMECWSQIQST 976
Score = 50 (22.7 bits), Expect = 1.8e-14, Sum P(3) = 1.8e-14
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 585 ILRKLQPK-GIWYLTVLGSLATTQREYVAL 613
IL KLQ +W+L L +LAT R+Y +
Sbjct: 1064 ILNKLQGNCALWFLK-LTNLATFTRQYAGI 1092
>UNIPROTKB|G4NIZ8 [details] [associations]
symbol:MGG_02784 "DNA-binding protein SMUBP-2"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR024714 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0008033 GO:GO:0004386 EMBL:CM001237
GO:GO:0006364 GO:GO:0006369 GO:GO:0043144 GO:GO:0016180 KO:K10706
InterPro:IPR024481 PANTHER:PTHR10887:SF164 Pfam:PF12726
RefSeq:XP_003720957.1 EnsemblFungi:MGG_02784T0 GeneID:2682672
KEGG:mgr:MGG_02784 Uniprot:G4NIZ8
Length = 2037
Score = 191 (72.3 bits), Expect = 2.7e-12, Sum P(3) = 2.7e-12
Identities = 70/236 (29%), Positives = 103/236 (43%)
Query: 773 RMLVCAPSNAATDELLTRVLDRGFIDGEMKVYRPDVARVGVDSQTRAAQAVSVERRTEQL 832
++LVCAPSNAA DEL+ R L G D ++ +V R+G AA V T
Sbjct: 1392 KLLVCAPSNAAVDELVLR-LKAGIKDTNGNTHKINVLRLGRSDAINAA----VRDVTLDE 1446
Query: 833 LVKSREEVIGWMHNLKGREAVLSQQIANLQRELNAAAFAVRSQGSVGVDPDVLMARDQNR 892
LVK + + N G ++ L +E A VR A D +
Sbjct: 1447 LVKEKMDA-ALNVNGSGNSGPTDRE--KLHQE--AGEIKVRVAALREALEQARAAGDHGQ 1501
Query: 893 DTLLQNLAAAVENRDKVLVEMSRFHILEGRFRPGSNFNLEEA---RASLEASFANEAEIV 949
LQ N D++ + + R + N EA R +++ S +EA ++
Sbjct: 1502 TNSLQR------NLDELRKKQGQIGAQIDRDKASGNTYAREAEIKRRNIQQSILSEAHVL 1555
Query: 950 FTTVSSSGRKLFSRLTHGFDMVVIDEAAQASEVGVLPPLSLGAARCVLGGGSSAAP 1005
T+S +G +F L F+ V+IDEAAQ E+ L PL GA++C+L G P
Sbjct: 1556 CATLSGAGHDMFKSLQVEFETVIIDEAAQCVELSALIPLKYGASKCILVGDPKQLP 1611
Score = 83 (34.3 bits), Expect = 2.7e-12, Sum P(3) = 2.7e-12
Identities = 15/23 (65%), Positives = 18/23 (78%)
Query: 691 FTLVQGPPGTGKTHTVWGMLNVI 713
FTLVQGPPGTGKT T+ M+ +
Sbjct: 1344 FTLVQGPPGTGKTKTIIAMVGAL 1366
Score = 40 (19.1 bits), Expect = 2.7e-12, Sum P(3) = 2.7e-12
Identities = 8/31 (25%), Positives = 16/31 (51%)
Query: 602 SLATTQREYVALHAFCRLNSQMQTAILKPSP 632
++ T +RE+ AL + + + +PSP
Sbjct: 1279 NMTTVEREFAALESLQYYDLMTEVLDAEPSP 1309
>SGD|S000004422 [details] [associations]
symbol:SEN1 "Presumed helicase and subunit of the Nrd1
complex (Nrd1p-Nab3p-Sen1p)" species:4932 "Saccharomyces
cerevisiae" [GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0043144
"snoRNA processing" evidence=IEA] [GO:0008033 "tRNA processing"
evidence=IEA;IMP] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0006364 "rRNA
processing" evidence=IEA;IMP] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0019904 "protein
domain specific binding" evidence=IMP;IDA] [GO:0031126 "snoRNA
3'-end processing" evidence=IMP] [GO:0006378 "mRNA polyadenylation"
evidence=IMP] [GO:0006369 "termination of RNA polymerase II
transcription" evidence=IEA;IMP] [GO:0016180 "snRNA processing"
evidence=IEA;IMP] [GO:0008186 "RNA-dependent ATPase activity"
evidence=ISS] [GO:0043141 "ATP-dependent 5'-3' DNA helicase
activity" evidence=ISS] [GO:0032575 "ATP-dependent 5'-3' RNA
helicase activity" evidence=ISS] [GO:0008094 "DNA-dependent ATPase
activity" evidence=ISS] [GO:0035649 "Nrd1 complex" evidence=IDA]
[GO:0005657 "replication fork" evidence=IDA] [GO:0045005
"maintenance of fidelity involved in DNA-dependent DNA replication"
evidence=IMP] [GO:0031124 "mRNA 3'-end processing" evidence=IMP]
InterPro:IPR024714 SGD:S000004422 GO:GO:0005524 GO:GO:0005634
GO:GO:0019904 GO:GO:0006378 EMBL:BK006945 GO:GO:0008033
eggNOG:COG1112 EMBL:U20939 EMBL:U21094 GO:GO:0006364 GO:GO:0006369
GO:GO:0031126 GO:GO:0043141 KO:K00088 RefSeq:NP_013536.3
GeneID:851152 KEGG:sce:YLR432W GO:GO:0016180 KO:K10706
RefSeq:NP_013534.3 GeneID:851150 KEGG:sce:YLR430W GO:GO:0035649
GO:GO:0032575 InterPro:IPR024481 PANTHER:PTHR10887:SF164
Pfam:PF12726 EMBL:M74589 PIR:S53416 ProteinModelPortal:Q00416
SMR:Q00416 DIP:DIP-881N IntAct:Q00416 MINT:MINT-427565
STRING:Q00416 PaxDb:Q00416 PeptideAtlas:Q00416 EnsemblFungi:YLR430W
CYGD:YLR430w GeneTree:ENSGT00580000081652 HOGENOM:HOG000246755
OMA:SAIIPLR OrthoDB:EOG4MPMZ6 NextBio:967924 Genevestigator:Q00416
GermOnline:YLR430W Uniprot:Q00416
Length = 2231
Score = 181 (68.8 bits), Expect = 1.9e-10, Sum P(4) = 1.9e-10
Identities = 66/241 (27%), Positives = 111/241 (46%)
Query: 767 KLCPKPRMLVCAPSNAATDELLTRVLDRGFIDGEMKVYRPDVARVGVDSQTRAAQAVSVE 826
+L K ++L+CAPSNAA DE+ R L G D + ++P + RVG V+++
Sbjct: 1399 QLLKKQKILICAPSNAAVDEICLR-LKSGVYDKQGHQFKPQLVRVGRSDVVN----VAIK 1453
Query: 827 RRTEQLLVKSREEVIGWMHNLKGREAVLSQQIANLQRELNAAAFAVRS-QGSVGVDPDVL 885
T + LV R IG N + R L+R+ N A R +G + +
Sbjct: 1454 DLTLEELVDKR---IG-ERNYEIRTD------PELERKFNNAVTKRRELRGKLDSESGNP 1503
Query: 886 MARDQNRDTLLQNLAAAVENRDKVLVEMSRFHILEGRFRPGSNF-NLEEARASLEASFAN 944
+ D + L + K++ E+ R E R + N+ N + R + +A
Sbjct: 1504 ESPMSTED--ISKLQLKIRELSKIINELGRDRD-EMREKNSVNYRNRDLDRRNAQAHILA 1560
Query: 945 EAEIVFTTVSSSGRKLFSRLTHGFDMVVIDEAAQASEVGVLPPLSLGAARCVLGGGSSAA 1004
++I+ +T+S S + + + FD V+IDEA Q +E+ + PL G RC++ G +
Sbjct: 1561 VSDIICSTLSGSAHDVLATMGIKFDTVIIDEACQCTELSSIIPLRYGGKRCIMVGDPNQL 1620
Query: 1005 P 1005
P
Sbjct: 1621 P 1621
Score = 85 (35.0 bits), Expect = 1.9e-10, Sum P(4) = 1.9e-10
Identities = 21/54 (38%), Positives = 28/54 (51%)
Query: 691 FTLVQGPPGTGKTHTVWGMLNVIHLVQYQHYYNSLLKKLAPESYKQPNESNSDN 744
F+L+QGPPGTGKT T+ G++ Y+ S + K P E NS N
Sbjct: 1352 FSLIQGPPGTGKTKTILGIIG---------YFLSTKNASSSNVIKVPLEKNSSN 1396
Score = 40 (19.1 bits), Expect = 1.9e-10, Sum P(4) = 1.9e-10
Identities = 11/39 (28%), Positives = 19/39 (48%)
Query: 439 FESVEEYVRVFEPLLFEECRAQLYSTWEELTETGSRDTH 477
F S +Y +V +PLL L +W+ L + R+ +
Sbjct: 1147 FNSPADYQKVMKPLL-------LLESWQGLCSSRDREDY 1178
Score = 38 (18.4 bits), Expect = 1.9e-10, Sum P(4) = 1.9e-10
Identities = 11/37 (29%), Positives = 15/37 (40%)
Query: 596 YLTVLGSLATTQREYVALHAFCRLNSQMQTAILKPSP 632
Y + + T +REY L + Q KPSP
Sbjct: 1281 YCVKVMQMTTIEREYSTLEGLEYYDLVGQILQAKPSP 1317
>UNIPROTKB|F1S0U6 [details] [associations]
symbol:SETX "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0007623 "circadian rhythm" evidence=IEA] [GO:0006369
"termination of RNA polymerase II transcription" evidence=IEA]
[GO:0006302 "double-strand break repair" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA]
InterPro:IPR026121 GO:GO:0005737 GO:GO:0005654 GO:GO:0006302
KO:K10706 GeneTree:ENSGT00580000081652 CTD:23064 OMA:RLINHFE
PANTHER:PTHR10887:SF15 EMBL:CU550727 EMBL:CU914573
RefSeq:XP_003353743.1 UniGene:Ssc.45527 Ensembl:ENSSSCT00000006294
GeneID:100511239 KEGG:ssc:100511239 Uniprot:F1S0U6
Length = 2661
Score = 104 (41.7 bits), Expect = 3.0e-09, Sum P(5) = 3.0e-09
Identities = 37/112 (33%), Positives = 51/112 (45%)
Query: 599 VLGSLATTQREYVALHAFCRLNSQMQTAILKPSPEHFPKYEHQTPTMPECFTQNFIDHLH 658
V+ SL TTQR+ A+ N Q+ AIL P+P F + T T ++ I +L
Sbjct: 1873 VISSLVTTQRKLKAMSLLSGRN-QLARAILNPNPMDFCTKDLLTTT-----SERIIAYL- 1925
Query: 659 RTFNGPQLXXXXXXXXXXXXGTSSGMTKSPWPFTLVQGPPGTGKTHTVWGML 710
R FN Q S + K L+ GPPGTGK+ T+ G+L
Sbjct: 1926 RDFNEDQKKAIETAYAMVKHSPS--VAK----ICLIHGPPGTGKSKTIVGLL 1971
Score = 78 (32.5 bits), Expect = 3.0e-09, Sum P(5) = 3.0e-09
Identities = 23/66 (34%), Positives = 31/66 (46%)
Query: 945 EAEIVFTTVSSSGRKLFSRLTHG-----FDMVVIDEAAQASEVGVLPPLSLGAARCVLGG 999
E+ I+ T+S+SG L G F V++DEA Q+ EV L PL + VL G
Sbjct: 2141 ESHIICCTLSTSGGLLLESAFRGQGGVPFSCVIVDEAGQSCEVETLTPLIHRCNKLVLVG 2200
Query: 1000 GSSAAP 1005
P
Sbjct: 2201 DPKQLP 2206
Score = 77 (32.2 bits), Expect = 3.0e-09, Sum P(5) = 3.0e-09
Identities = 25/98 (25%), Positives = 47/98 (47%)
Query: 773 RMLVCAPSNAATDELLTRVLDRGFIDGEMKVYRPDVARVGVDSQTRAAQAVSVERRT--- 829
R+LVCAPSNAA DEL+ +++ F + + K R + G + R S+
Sbjct: 1996 RVLVCAPSNAAVDELMKKIILE-FKE-KCKDKRNPLGNCGDINLVRLGPEKSINNEVLRF 2053
Query: 830 ---EQLLVKSREEVIGWMHNLKGREAVLSQQIANLQRE 864
Q+ + ++++ ++ + R+ L Q+ L R+
Sbjct: 2054 SLDSQVNHRMKKDLPSYVQEMHRRKEFLDHQLDELSRQ 2091
Score = 69 (29.3 bits), Expect = 3.0e-09, Sum P(5) = 3.0e-09
Identities = 51/210 (24%), Positives = 84/210 (40%)
Query: 92 DQNRRVASSSSKPGNGEDIKAASSSVP-GSENAAADEREEGEW---SDAEGSVDAYASNL 147
+Q + + KP N +I A++S P G + A + EGE SD E D + +
Sbjct: 1439 NQENPIVLNGRKPTN--EIVASTSEDPLGGGDLIATLKSEGEPECNSDIEED-DIFLTQR 1495
Query: 148 LNEQ-GKASQ-GQGVSEVVDTATGVD-IKVPESSQDGSNSHGVLGSD---QDPSDQKRNR 201
E SQ +G +++++ G D ++V E S+ + + +D + +N+
Sbjct: 1496 DPEDMDLCSQMEEGNAQLIEVVHGKDTVQVEEDSRSRPQLESLSSAKCKYKDCVETMKNQ 1555
Query: 202 ----SRHSEANIKGEKSVDGQEEPCLLPKQREIKGTE--ASHTTKGANNLGKRKIDQQKE 255
S+HSEA E P K T+ +S TT NL K +
Sbjct: 1556 GEYCSKHSEAKAADEDVFRKPGLPLSASKPSRPSTTKIFSSRTTSRIANLSKSL--ENAS 1613
Query: 256 AMLGKKRNRQTVFLNLEDVKQAGSLKTSTP 285
A+ RN+ + V Q SL + P
Sbjct: 1614 ALPPTLRNKSNGVQPISKVLQPASLMSPKP 1643
Score = 55 (24.4 bits), Expect = 3.0e-09, Sum P(5) = 3.0e-09
Identities = 23/101 (22%), Positives = 42/101 (41%)
Query: 435 VPGRFESVEEYVRVFEPLLFEECRAQLYSTWEELTETGSRDTHVMVRIRNIERRERGWYD 494
VP RF+ +Y VF PL+ + W ++ H + +R + +++
Sbjct: 1728 VPVRFQDCGDYFSVFFPLMILNTFETVAQEW--ISSPNKEKFH-QLHLRKFPADYKKYWE 1784
Query: 495 VIVLPVNECKWSF----KEGDVAVLSTPR-PGSVRGKRNHS 530
+V + EC+ + KE D+ L R G +RN +
Sbjct: 1785 FVVY-LEECELAKQLHPKENDLVFLVPERLNGEKDVERNRA 1824
Score = 45 (20.9 bits), Expect = 4.2e-07, Sum P(6) = 4.2e-07
Identities = 18/63 (28%), Positives = 27/63 (42%)
Query: 297 VKEARTIPSPAERGGEKQSQAI---NKDQKQYDVSSCNE----GGTSVEAL--EPKPECN 347
+K R P+P + Q I + V+S +E GG + L E +PECN
Sbjct: 1423 IKAKRASPAPDDTCPLNQENPIVLNGRKPTNEIVASTSEDPLGGGDLIATLKSEGEPECN 1482
Query: 348 GDM 350
D+
Sbjct: 1483 SDI 1485
Score = 44 (20.5 bits), Expect = 4.2e-07, Sum P(6) = 4.2e-07
Identities = 28/122 (22%), Positives = 50/122 (40%)
Query: 108 EDIKAASSSVPGSE--NAAADEREEGEWSDAEGSVDAYASNLLNEQGKASQGQGVSEVVD 165
+ ++ S+S G + A +G+ + V A S+++ +Q K S + VD
Sbjct: 753 DSLEKVSTSNEGFSLRDDALGRSSKGKSKAQKNEVCAKLSHVMKKQHKNSGPVSTAVTVD 812
Query: 166 TATGV-DIKVPESSQD--GSNSHGVLGS------DQDPSDQKR--NRSRHSEANIKGEKS 214
+ V ++ S +D G G + S D +QK N S + IK E+
Sbjct: 813 DSLSVPSLERVHSKKDAGGQKGDGFIHSLSNGILDDKHGEQKSQDNSSLPKKKQIKKEEE 872
Query: 215 VD 216
+D
Sbjct: 873 LD 874
Score = 42 (19.8 bits), Expect = 1.1e-06, Sum P(5) = 1.1e-06
Identities = 17/62 (27%), Positives = 24/62 (38%)
Query: 274 VKQAGSLKTSTPRRQNPPV-VTRTVKEARTIPSPAERGG-EKQSQAINKDQKQYDVSSCN 331
V Q + TP + PP + E + S +R E S A +KD + D
Sbjct: 599 VPQCSTFVDVTPACKTPPASCNKEEHEHKGKKSVKDRHCLESSSPAFSKDPMKADACQGQ 658
Query: 332 EG 333
EG
Sbjct: 659 EG 660
Score = 41 (19.5 bits), Expect = 8.0e-07, Sum P(6) = 8.0e-07
Identities = 17/67 (25%), Positives = 31/67 (46%)
Query: 195 SDQKRNRSRHSEANIKGEKSVDGQEEPCLLPKQREIKG----TEASHT---TKGANNLGK 247
++Q S H + I + DG +E +L ++ IK TE T GAN +
Sbjct: 998 ANQNNGESSHGQIIIISDSDDDGDDER-ILGFEKHIKQDKTCTEKDRPEQRTPGANTNVE 1056
Query: 248 RKIDQQK 254
+K+ +++
Sbjct: 1057 QKVIKEE 1063
Score = 38 (18.4 bits), Expect = 1.5e-06, Sum P(6) = 1.5e-06
Identities = 12/41 (29%), Positives = 20/41 (48%)
Query: 76 KAAQGHGVEVEPKKAEDQNRRVASSSSKPGNGED-IKAASS 115
+AAQ G+ V D + + + + +G+ IK ASS
Sbjct: 1378 QAAQNSGIFVPASDRSDYSSKGGAEVTANRSGKQLIKCASS 1418
Score = 38 (18.4 bits), Expect = 1.9e-06, Sum P(6) = 1.9e-06
Identities = 33/149 (22%), Positives = 62/149 (41%)
Query: 225 PKQREIKGTEASHTTKGANNLGKR-KIDQQKEAMLG--KKRNRQT-VFLNLEDVKQAGSL 280
PK++ + A + ++++ K + D +++ K +++T ++ +
Sbjct: 1161 PKRKRYENPVAEDPVRPSSSIRKEGQSDTERDLPENGLKSTDKRTRADASVTRATEVSLK 1220
Query: 281 KTSTPRRQNPPVVTRTVKEARTIPSPAERGGE-KQSQAINKDQKQYDVSSCNEGGTSVEA 339
K+S PR + P+ R V + T P + E K+ Q+ K + SC V A
Sbjct: 1221 KSSKPRTHSKPI--RRVPLSET---PKKTHAETKKGQS-----KSSNYLSCRTTPAVVPA 1270
Query: 340 LEPKPECNGDMNFGLPGSTDPKLGTKKHP 368
+ + +C P S KLG KK P
Sbjct: 1271 KKFR-KCPE------PTSIAEKLGLKKRP 1292
Score = 38 (18.4 bits), Expect = 2.7e-06, Sum P(5) = 2.7e-06
Identities = 12/31 (38%), Positives = 15/31 (48%)
Query: 48 SAAPQGIINN--NA-FSHAPSVSGFQPFNRA 75
S P G + N N +S APS S Q + A
Sbjct: 1640 SPKPMGEVKNLSNVPYSQAPSASNRQGYRGA 1670
>ZFIN|ZDB-GENE-070402-1 [details] [associations]
symbol:setx "senataxin" species:7955 "Danio rerio"
[GO:0006302 "double-strand break repair" evidence=IEA]
InterPro:IPR026121 ZFIN:ZDB-GENE-070402-1 GO:GO:0006302
InterPro:IPR024481 Pfam:PF12726 GeneTree:ENSGT00580000081652
PANTHER:PTHR10887:SF15 EMBL:CU927918 IPI:IPI00481119
Ensembl:ENSDART00000082314 Ensembl:ENSDART00000149777
Uniprot:E7FBJ2
Length = 2368
Score = 118 (46.6 bits), Expect = 5.2e-09, Sum P(4) = 5.2e-09
Identities = 46/168 (27%), Positives = 74/168 (44%)
Query: 849 GREAVLSQQIANLQRELNAAAFAVRSQGSVGVDPDVLMARDQNRDTLLQNLAAAVENRDK 908
G E +S+ + + A A R+Q +V + DV ++Q D +++NL+ K
Sbjct: 1828 GNERTISKSLKPFSLDHQTKARAQRAQQTV--ESDVHRRKEQ-LDQMIENLSHQCAKTQK 1884
Query: 909 VLVEMSRFHILEGRF---RPGSNFNLEEARASLEASFA---NEAEIVFTTVSSSG----R 958
E + +F R G + ++E R + S A A ++ T+S+SG
Sbjct: 1885 NSTEFKNLLEQKKQFLKEREGLSRQIKECRGRRQESQALVLQNAHVICCTLSTSGSIVLE 1944
Query: 959 KLFSRLTHG-FDMVVIDEAAQASEVGVLPPLSLGAARCVLGGGSSAAP 1005
F RL H F V+IDEA+QA E L P+ +L G + P
Sbjct: 1945 NAFRRLGHEPFSCVIIDEASQAKETETLIPMLYRCPSVILVGDPNQLP 1992
Score = 91 (37.1 bits), Expect = 5.2e-09, Sum P(4) = 5.2e-09
Identities = 36/147 (24%), Positives = 61/147 (41%)
Query: 80 GHGVEVEPKKAEDQNRRVASSSSKPGNGEDIKAASSSVPGSENAA--ADEREEGEWSDAE 137
G V+VEP Q RR AS +SK + + A+ + GS++ RE+ + A
Sbjct: 1127 GQNVQVEPH----QKRRRASRTSKTSPQKRMVKANKKLMGSQDIQFFRQSREKHQ-KPAT 1181
Query: 138 GSVDAYASNLLNEQGKASQGQGVSEVVDTATGVDIKVPESSQDGSNSHGVLGSDQDPSDQ 197
+ AS ++ Q + + + + P++ N G LGS D
Sbjct: 1182 EPITTSASKPVSRQDELHSSRPTIPNNEDGDFLPCPQPDAHCQQDNEKGALGSSDSSGDG 1241
Query: 198 KRNR----SRHSEANIKGEKSVDGQEE 220
N+ S +E N++GEK+ +E
Sbjct: 1242 VGNKFLQASEAAEGNLEGEKAAQASKE 1268
Score = 75 (31.5 bits), Expect = 5.2e-09, Sum P(4) = 5.2e-09
Identities = 14/25 (56%), Positives = 19/25 (76%)
Query: 686 KSPWPFTLVQGPPGTGKTHTVWGML 710
K+P F L+ GPPGTGK+ T+ G+L
Sbjct: 1735 KTP-KFLLIHGPPGTGKSKTIGGLL 1758
Score = 74 (31.1 bits), Expect = 0.00012, Sum P(4) = 0.00012
Identities = 26/102 (25%), Positives = 53/102 (51%)
Query: 771 KPRMLVCAPSNAATDELLTRVLDRGFIDGEMKVYRP-------DVARVGVDSQ-TRAAQA 822
+ R+L+CAPSNAA D L+ +V+ F + + P ++ R+G + +++ +
Sbjct: 1781 RTRVLLCAPSNAAIDSLMKKVI-LIFKEKCRNINAPQGNCGDINLVRLGNERTISKSLKP 1839
Query: 823 VSVERRTEQLLVKSREEVIGWMHNLKGREAVLSQQIANLQRE 864
S++ +T+ ++++ V +H R+ L Q I NL +
Sbjct: 1840 FSLDHQTKARAQRAQQTVESDVHR---RKEQLDQMIENLSHQ 1878
Score = 49 (22.3 bits), Expect = 5.2e-09, Sum P(4) = 5.2e-09
Identities = 44/189 (23%), Positives = 76/189 (40%)
Query: 342 PKPECNGDMNFGLPGSTDPKLGTKKHPPAKKQTATANLYQ--DTSVERLIREVT-----N 394
PKP + LP + PKL T + + + +YQ + V + + + +
Sbjct: 1426 PKPPALKQVT--LPQGSVPKLVTSNKISSTSEPPSYKVYQRPEAPVNKPVNKPMPTMDQS 1483
Query: 395 EKFWHHPVVHVPPIRTLLRIV-TLKGHGKIYDASEESELQCVPGRFESVEEYVRVFEPLL 453
KF V+ ++ R++ K G D + L+ VP F S EY PLL
Sbjct: 1484 PKF-DLSVLTQAILKWEYRMLDNYKAFGSPLDLCQ-LPLKEVPVNFSSYLEYFNTLYPLL 1541
Query: 454 FEECRAQLYSTWEELTETGSRDTHVMVRIRNIERRERGWYDVIVLPVN-EC--KWSF-KE 509
++ + W L E R + ++++ IE R + ++ EC K + KE
Sbjct: 1542 LINAFEEMANEW--LKE--GR-VKLYLKVQGIEYSNRTASASFIAGLSQECDVKQIYPKE 1596
Query: 510 GDVAVLSTP 518
D+ +L P
Sbjct: 1597 DDLVLLWLP 1605
Score = 48 (22.0 bits), Expect = 3.9e-06, Sum P(3) = 3.9e-06
Identities = 14/49 (28%), Positives = 21/49 (42%)
Query: 779 PSNAATDELLTRVLDRGFIDGEMKVYRPDVARVGVDSQTRAAQAVSVER 827
PSNAA D L L G K +P ++ S A+ + +E+
Sbjct: 1334 PSNAANDHLF---LKPGMSPMSQKKAKPSTTKIYTPSSRSASLVLEMEK 1379
Score = 47 (21.6 bits), Expect = 8.2e-05, Sum P(5) = 8.2e-05
Identities = 18/78 (23%), Positives = 32/78 (41%)
Query: 103 KPGNGEDIKAASSSVPGSENAAADEREEGEWSDAEGSVDAYASNLLNEQGKASQGQGVSE 162
+ ED++ SSS S +A + S + S +S++ + AS +G
Sbjct: 1025 RSSTSEDMEEPSSSTTPSSSAVSSTSSSSSSSSSTPS----SSSITSPYFSASTSRGTPA 1080
Query: 163 VVDTATGVDIKVPESSQD 180
+V I PES+ +
Sbjct: 1081 IVPPKKVRKIAEPESTAE 1098
Score = 44 (20.5 bits), Expect = 8.2e-05, Sum P(5) = 8.2e-05
Identities = 10/29 (34%), Positives = 13/29 (44%)
Query: 331 NEGGTSVEALEPKPECNGDMNFGLPGSTD 359
NE G + +P C D G GS+D
Sbjct: 1208 NEDGDFLPCPQPDAHCQQDNEKGALGSSD 1236
Score = 39 (18.8 bits), Expect = 0.00045, Sum P(5) = 0.00045
Identities = 13/58 (22%), Positives = 26/58 (44%)
Query: 71 PFNRAKAAQGHGVEVEPKKAEDQNRRVASSSSKPGNGEDIKAASSSVPGSENAAADER 128
P+ R+ ++ +E EP + + SS+S + +SSS+ +A+ R
Sbjct: 1022 PWKRSSTSED--ME-EPSSSTTPSSSAVSSTSSSSSSSSSTPSSSSITSPYFSASTSR 1076
>MGI|MGI:2443480 [details] [associations]
symbol:Setx "senataxin" species:10090 "Mus musculus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISO] [GO:0005654 "nucleoplasm" evidence=ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0006302 "double-strand break repair"
evidence=ISO] [GO:0006369 "termination of RNA polymerase II
transcription" evidence=IMP] [GO:0006974 "response to DNA damage
stimulus" evidence=IEA] [GO:0007623 "circadian rhythm"
evidence=IMP] [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR026121 MGI:MGI:2443480 GO:GO:0005524 GO:GO:0005737
GO:GO:0005654 GO:GO:0005730 GO:GO:0007623 GO:GO:0006302
GO:GO:0004386 eggNOG:COG1112 GO:GO:0006369 KO:K10706 EMBL:AL772379
GeneTree:ENSGT00580000081652 CTD:23064 HOVERGEN:HBG108476
OrthoDB:EOG4XWFWX PANTHER:PTHR10887:SF15 EMBL:AL845267
EMBL:AK044730 EMBL:AK048354 EMBL:AK077911 EMBL:BC046382
EMBL:BC058109 EMBL:BC079604 EMBL:AK129177 EMBL:BK001523
IPI:IPI00421108 IPI:IPI00626271 RefSeq:NP_932150.2 UniGene:Mm.41867
ProteinModelPortal:A2AKX3 SMR:A2AKX3 DIP:DIP-56995N IntAct:A2AKX3
STRING:A2AKX3 PhosphoSite:A2AKX3 PaxDb:A2AKX3 PRIDE:A2AKX3
Ensembl:ENSMUST00000061578 Ensembl:ENSMUST00000129544 GeneID:269254
KEGG:mmu:269254 UCSC:uc008izm.1 InParanoid:A2AKX3 NextBio:392760
Bgee:A2AKX3 CleanEx:MM_SETX Genevestigator:A2AKX3 Uniprot:A2AKX3
Length = 2646
Score = 101 (40.6 bits), Expect = 1.3e-08, Sum P(6) = 1.3e-08
Identities = 35/119 (29%), Positives = 53/119 (44%)
Query: 592 KGIWYLTVLGSLATTQREYVALHAFCRLNSQMQTAILKPSPEHFPKYEHQTPTMPECFTQ 651
K + V+ SL TTQR+ A+ N Q+ A+L P+P F + T T ++
Sbjct: 1848 KNLTRCIVISSLVTTQRKLKAMSLLSSRN-QLARAVLNPNPMDFCTKDLLTTT-----SE 1901
Query: 652 NFIDHLHRTFNGPQLXXXXXXXXXXXXGTSSGMTKSPWPFTLVQGPPGTGKTHTVWGML 710
+ +L + FN Q S + K L+ GPPGTGK+ T+ G+L
Sbjct: 1902 RIVAYL-KDFNEDQKKAIETAYAMVKHSPS--VAK----ICLIHGPPGTGKSKTIVGLL 1953
Score = 76 (31.8 bits), Expect = 1.3e-08, Sum P(6) = 1.3e-08
Identities = 21/66 (31%), Positives = 31/66 (46%)
Query: 945 EAEIVFTTVSSSGRKLFSRLTHG-----FDMVVIDEAAQASEVGVLPPLSLGAARCVLGG 999
E+ ++ T+S+SG L G F V++DEA Q+ EV L PL + +L G
Sbjct: 2123 ESHVICCTLSTSGGLLLESAFRGQGGVPFSCVIVDEAGQSCEVETLSPLIHRCNKLILVG 2182
Query: 1000 GSSAAP 1005
P
Sbjct: 2183 DPKQLP 2188
Score = 75 (31.5 bits), Expect = 1.3e-08, Sum P(6) = 1.3e-08
Identities = 13/20 (65%), Positives = 18/20 (90%)
Query: 773 RMLVCAPSNAATDELLTRVL 792
R+LVCAPSNAA DEL+ +++
Sbjct: 1978 RVLVCAPSNAAVDELMKKII 1997
Score = 70 (29.7 bits), Expect = 1.3e-08, Sum P(6) = 1.3e-08
Identities = 75/341 (21%), Positives = 134/341 (39%)
Query: 51 PQGIINNNAFSHAPSVSGFQPFNRAKAAQGHGVEV-----EPKKAEDQNRRVASSS---- 101
P G+ N+F N+ AA G + + ++ ED++ R +S
Sbjct: 965 PSGLSKQNSFQLQKGDKRCLTANQNSAATCRGQVIVISDSDEEEDEDEDERSSSEENIKQ 1024
Query: 102 SKPGNGEDIK-----AASSSVPGSENAAADEREEGEWSDAEGSVDAYASNLLNEQGKASQ 156
SK G+D A ++SV + +ER E+ D+E V + S+ +E Q
Sbjct: 1025 SKACIGKDCSEHRSLAVNASVE-KQLVKEEERYPVEFEDSESQVFEFESS--SEVFSVWQ 1081
Query: 157 GQGVSEVVDTATGVDIKVPESSQDGSNSHGVLGSDQDPSDQK-RNRSRHSEANIKGEKSV 215
+ ++ G D +N++ LG S++ RN++ + + SV
Sbjct: 1082 DHKIDSK-NSLQGEQKSYVTHVADSTNNN--LGCGDSVSEEVVRNKAEGVKEHAGPHSSV 1138
Query: 216 DGQEEPCLL----PKQREIKGTEASHTTKGANNLGKRKIDQQKEAMLGKKRNRQTVFLNL 271
EE C PK++ A + ++++G DQ L +R+ L
Sbjct: 1139 SA-EEFCKTGVKKPKRKRYDKVTAEDPQRPSSSVGT---DQ-----LPDRRD-----LTE 1184
Query: 272 EDVKQA--GSLKTSTPRRQNPPVVTRTVKEARTIPSPAER-GGEKQSQAINKDQKQ-YDV 327
D+K A G S+ ++ ++ ++ K +RT P + K ++ + D ++
Sbjct: 1185 SDLKSADMGMATPSSSVERDSTILQKSTK-SRTHSKPVRKVPASKATKKTHSDTRRGQSK 1243
Query: 328 SSCNEGGTSVEALEPKPECNGDMNFGLPGSTDPKLGTKKHP 368
SSC + A+ P + P ST KLG KK P
Sbjct: 1244 SSCYISCRTSPAIVPPKKLRQCPE---PTSTVEKLGLKKAP 1281
Score = 57 (25.1 bits), Expect = 1.2e-07, Sum P(6) = 1.2e-07
Identities = 53/251 (21%), Positives = 91/251 (36%)
Query: 157 GQGVSEVVDTATGVDIKVPESSQDGSNSHGVLGSDQDPSDQKRNRSRHSEANIKGEKSVD 216
G V+ V V P SS D + + + DP D ++ I K
Sbjct: 1450 GGAVTVQVGEVASVKAAEPASSSDTDDDDNLFLTQHDPQDMDLCSQLENKTIIVAHKKDT 1509
Query: 217 GQEEPCLLPKQRE------IKGTEASHTTKGANNLGKRKIDQQKEAMLGKKRNRQTVFLN 270
Q E L Q E K + TTK R + K A G R + + L+
Sbjct: 1510 VQREDSLSRPQLESLSITKCKYKDCVETTKNQGEYCPRH-SEAKAADDGLFR-KPGLPLS 1567
Query: 271 LEDVKQAGSLKTSTPRRQNPPVVTRTVKEARTIPSPAERGGEKQSQAINKDQKQYDVSSC 330
+ A L+ +T + + +RT ++++ S + ++++ Q V+
Sbjct: 1568 V-----ARPLRPTTTKIFSSSSASRTANLSKSLESTTLQQSALKNKSSGA-QPNLKVTPP 1621
Query: 331 NEGGTSVEALEPKPECNGDMNFGLPGSTDP---KLGTKKHPPAKKQTATANLYQDTSV-E 386
+ G+ E K CN +F P S+ KL ++ P + L S+ +
Sbjct: 1622 SSMGSQKPVAEVKSLCN-IFHFQTPSSSSKQSCKLTFSENRPTSAASPVNILLPSQSIFD 1680
Query: 387 RLIREVTNEKF 397
I+EV K+
Sbjct: 1681 TFIKEVLKWKY 1691
Score = 56 (24.8 bits), Expect = 1.3e-08, Sum P(6) = 1.3e-08
Identities = 18/86 (20%), Positives = 39/86 (45%)
Query: 435 VPGRFESVEEYVRVFEPLLFEECRAQLYSTWEELTETGSRDTHVMVRIRNIERRERGWYD 494
VP RF+ EY VF PL+ + W + +++ +++R + +++
Sbjct: 1714 VPVRFQDCAEYFNVFLPLIILNAFETVAQEW---LSSPNKENFYQLQLRKFPADYKKYWE 1770
Query: 495 VIVLPVNECKWSF----KEGDVAVLS 516
++ +NE + + KE D+ L+
Sbjct: 1771 FLIY-LNESELAKQLHPKENDLVFLA 1795
Score = 46 (21.3 bits), Expect = 2.3e-06, Sum P(6) = 2.3e-06
Identities = 37/171 (21%), Positives = 68/171 (39%)
Query: 108 EDIKAASSSVPGSENAAADEREEGEWSDA-EGSVDAYASNL-LNEQGKASQGQGVSEVVD 165
E +KA + V N +E + + D E + + L L ++ +A + E V
Sbjct: 646 EPMKADTHRVLMKVNTTEEENFKQHYIDLNEEEQEPLPAELCLKQKSEALFSESAQEQVK 705
Query: 166 TATGVDIKVPESSQDGSNSHGVLGSDQDPSDQKRNRSRHSEANIKGEKSVDGQEEPCLLP 225
+ K SS SNS G + D+ S HS + S D E+
Sbjct: 706 ISAEKSGK-ESSSYAPSNSTSRNGPEWG-CDRGVIMSAHSLT----DSSSDFMEQVSTSN 759
Query: 226 KQREIKGTEASHTTKGANNLGKRKIDQQKEAMLGKKRNRQTVFLNLEDVKQ 276
+ +K T+K + L K +I + ++ K+ + T+ N+ D+++
Sbjct: 760 EDVSLKDGSVGKTSKPSFKLQKDEICAKLSHVIKKQIRKSTLVDNIIDLEE 810
Score = 44 (20.5 bits), Expect = 1.2e-07, Sum P(6) = 1.2e-07
Identities = 17/62 (27%), Positives = 27/62 (43%)
Query: 57 NNAFSHAPSVSGFQPFNRAKAAQGHGVEVEP---KKAEDQNRRVASSSSKPGNGEDIKAA 113
N A S + SG + + GH V +P K E+Q + +S K E++ +
Sbjct: 811 NTAISDLENCSGTDGGALKEDSIGHNVPSDPVLDDKHEEQKSQNSSLFKKEIKSEELDNS 870
Query: 114 SS 115
SS
Sbjct: 871 SS 872
Score = 42 (19.8 bits), Expect = 5.5e-06, Sum P(6) = 5.5e-06
Identities = 15/64 (23%), Positives = 27/64 (42%)
Query: 280 LKTSTPRRQNPPVVTRTVKEARTIPSPAERGGEKQSQAINKDQKQYDVS-SCNEGGTSVE 338
+K +T +N + E P PAE +++S+A+ + Q V S + G
Sbjct: 657 MKVNTTEEENFKQHYIDLNEEEQEPLPAELCLKQKSEALFSESAQEQVKISAEKSGKESS 716
Query: 339 ALEP 342
+ P
Sbjct: 717 SYAP 720
Score = 41 (19.5 bits), Expect = 1.3e-08, Sum P(6) = 1.3e-08
Identities = 11/27 (40%), Positives = 18/27 (66%)
Query: 409 RTLLRIVTLKGHGK---IYDASEESEL 432
R+L IV L+ HGK + DA ++++L
Sbjct: 1290 RSLECIVQLRDHGKTVGVVDAPKKAKL 1316
>DICTYBASE|DDB_G0268660 [details] [associations]
symbol:DDB_G0268660 "DNA2/NAM7 helicase family
protein" species:44689 "Dictyostelium discoideum" [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
InterPro:IPR003593 SMART:SM00382 dictyBase:DDB_G0268660
Pfam:PF03828 GO:GO:0005524 EMBL:AAFI02000004 GO:GO:0004386
eggNOG:COG1112 InterPro:IPR014001 SMART:SM00487 InterPro:IPR002058
ProtClustDB:CLSZ2429765 RefSeq:XP_646847.2
ProteinModelPortal:Q55F23 EnsemblProtists:DDB0304625 GeneID:8616530
KEGG:ddi:DDB_G0268660 InParanoid:Q55F23 Uniprot:Q55F23
Length = 2314
Score = 101 (40.6 bits), Expect = 8.1e-08, Sum P(5) = 8.1e-08
Identities = 21/52 (40%), Positives = 33/52 (63%)
Query: 761 LLRTLPKLCPKPRMLVCAPSNAATDELLTRVLDRGFIDGEMKVYRPDVARVG 812
LL L + PK ++LVC PS+A+ DE+ R L + I+ + K Y P++ R+G
Sbjct: 1430 LLSILLAINPKFKILVCGPSHASVDEVAKRCLKKSLINVDGKPYLPNMVRIG 1481
Score = 84 (34.6 bits), Expect = 8.1e-08, Sum P(5) = 8.1e-08
Identities = 24/69 (34%), Positives = 37/69 (53%)
Query: 946 AEIVFTTVSSSGRKLFSRLTHGFDMVVIDEAAQASEVGVLPPLSLG-AARCVLGGGSSAA 1004
A IVF+T+S+SG R ++V++DE+ Q+SE L PL +G + +L G
Sbjct: 1510 ANIVFSTLSASGSGSV-RSNFKANIVLVDESTQSSEPASLIPLCIGNIEKLILVGDPLQL 1568
Query: 1005 PCNSYQQGS 1013
P + GS
Sbjct: 1569 PPTIFSSGS 1577
Score = 81 (33.6 bits), Expect = 8.1e-08, Sum P(5) = 8.1e-08
Identities = 13/22 (59%), Positives = 20/22 (90%)
Query: 692 TLVQGPPGTGKTHTVWGMLNVI 713
TL+QGPPGTGKT T++ +L+++
Sbjct: 1413 TLIQGPPGTGKTTTIYYLLSIL 1434
Score = 62 (26.9 bits), Expect = 8.1e-08, Sum P(5) = 8.1e-08
Identities = 13/54 (24%), Positives = 27/54 (50%)
Query: 415 VTLKGHGKIYDASEESELQCVPGRFESVEEYVRVFEPLLFEECRAQLYSTWEEL 468
+ LK + + + + + + E+V + +PL+ EE RAQL ++E+
Sbjct: 1160 IFLKSNPERIPLIQADNIHSLQDSYSDQSEFVNLMKPLIVEEYRAQLEGDFDEI 1213
Score = 37 (18.1 bits), Expect = 8.1e-08, Sum P(5) = 8.1e-08
Identities = 8/27 (29%), Positives = 10/27 (37%)
Query: 6 KLLFXXXXXXXXXXXXXXRIFSSQPQK 32
KL+F R+F S P K
Sbjct: 928 KLIFEDSTSADSIIKTLDRLFKSYPSK 954
>UNIPROTKB|F1PHA4 [details] [associations]
symbol:SETX "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006302 "double-strand break repair"
evidence=IEA] InterPro:IPR026121 GO:GO:0006302
GeneTree:ENSGT00580000081652 OMA:RLINHFE PANTHER:PTHR10887:SF15
EMBL:AAEX03006816 EMBL:AAEX03006817 Ensembl:ENSCAFT00000031656
Uniprot:F1PHA4
Length = 2531
Score = 102 (41.0 bits), Expect = 1.5e-07, Sum P(5) = 1.5e-07
Identities = 35/112 (31%), Positives = 51/112 (45%)
Query: 599 VLGSLATTQREYVALHAFCRLNSQMQTAILKPSPEHFPKYEHQTPTMPECFTQNFIDHLH 658
V+ SL TTQR+ A+ N Q+ A+L P+P F + T T ++ + +L
Sbjct: 1902 VISSLVTTQRKLKAMSLLSGRN-QLARAVLNPNPMDFCTKDLLTTT-----SERIVAYL- 1954
Query: 659 RTFNGPQLXXXXXXXXXXXXGTSSGMTKSPWPFTLVQGPPGTGKTHTVWGML 710
R FN Q S + K L+ GPPGTGK+ T+ G+L
Sbjct: 1955 RDFNEDQKKAIETAYAMVKHSPS--VAK----ICLIHGPPGTGKSKTIVGLL 2000
Score = 76 (31.8 bits), Expect = 1.5e-07, Sum P(5) = 1.5e-07
Identities = 21/66 (31%), Positives = 31/66 (46%)
Query: 945 EAEIVFTTVSSSGRKLFSRLTHG-----FDMVVIDEAAQASEVGVLPPLSLGAARCVLGG 999
E+ ++ T+S+SG L G F V++DEA Q+ EV L PL + +L G
Sbjct: 2170 ESHVICCTLSTSGGLLLESAFRGQGGVPFSCVIVDEAGQSCEVETLTPLIHRCNKLILVG 2229
Query: 1000 GSSAAP 1005
P
Sbjct: 2230 DPKQLP 2235
Score = 75 (31.5 bits), Expect = 1.5e-07, Sum P(5) = 1.5e-07
Identities = 13/20 (65%), Positives = 18/20 (90%)
Query: 773 RMLVCAPSNAATDELLTRVL 792
R+LVCAPSNAA DEL+ +++
Sbjct: 2025 RVLVCAPSNAAVDELMKKII 2044
Score = 56 (24.8 bits), Expect = 1.5e-07, Sum P(5) = 1.5e-07
Identities = 19/89 (21%), Positives = 39/89 (43%)
Query: 435 VPGRFESVEEYVRVFEPLLFEECRAQLYSTWEELTETGSRDTHVMVRIRNIERRERGWYD 494
VP RF+ +Y VF PL+ + W + +++ + +R + +++
Sbjct: 1756 VPVRFQDCGDYFNVFFPLMILNTFETVAQEW---ISSPNKEKFYQLHLRKFPADYKKYWE 1812
Query: 495 VIVLPVNECKWSF----KEGDVAVLSTPR 519
+V + EC+ + KE D+ L + R
Sbjct: 1813 FVV-HLEECELAKQLHPKENDLVFLISER 1840
Score = 55 (24.4 bits), Expect = 1.5e-07, Sum P(5) = 1.5e-07
Identities = 53/290 (18%), Positives = 118/290 (40%)
Query: 120 SENAAADEREEGEWSDAEGSVDAYASNLLNEQGKASQGQGVSEVVDTATGVDIKVPESSQ 179
+ N ++ E+ D + D A + + + K+ + + V +T + P+S +
Sbjct: 672 ASNTIEEDNEQNYIKDLKLE-DLSAESCIKQSSKSLFTERAQDQVKIST----EKPKSVK 726
Query: 180 DGSNSHGVLGSDQDPSDQKRNRSRHSEANIKGEKSVDGQEEPCLLPKQREIKGTEASHTT 239
+ S VL + + +R R ++ + S D E+ + K T+
Sbjct: 727 ENCTSRSVLQNFTSRNGPERACDRGIITHLLTDSSTDSLEKMSTSNEDFSFKDDVLGKTS 786
Query: 240 KGANNLGKRKIDQQKEAMLGKKRNRQTVFL----NLEDVKQAGSLKTSTPRRQNPPVVTR 295
K K +I + ++ KK++R++ F+ NLE+ ++ R+++
Sbjct: 787 KTKIKSQKDEICAKLSHVI-KKQHRKSTFIDNIGNLEENLTVSNVDNFYSRKESGDQKGD 845
Query: 296 TVKEARTI-PSPA--ERGGEKQSQA---INKDQ---KQYDVSSCNEGGTSVEALEPKPEC 346
+ + ++ P+ ++ GE++S + K Q +++D+ S +E ++ EC
Sbjct: 846 SFMHSLSLDPNGILDDKNGEQKSHKSLLLKKKQLKSEEFDIFSYHENSYQIQ------EC 899
Query: 347 NGDMNFGLPGSTD-PKLGTKKHPPAKKQ-TATANLYQDTSVERLIREVTN 394
+ D + L T+ KK P K T T +D + + V++
Sbjct: 900 HTD-DKDLVSFTEMTNTFVKKTSPFKDPVTVTVLESRDKEISKSTSPVSS 948
Score = 46 (21.3 bits), Expect = 2.7e-06, Sum P(6) = 2.7e-06
Identities = 29/106 (27%), Positives = 44/106 (41%)
Query: 269 LNLEDVKQAGSLKTSTPRRQNPPV-VTRTVKEARTIPSPAERGG-EKQSQAINKDQKQYD 326
L D++ A S +S R +N V + ++ + RT P R K + + D K+
Sbjct: 1217 LKNRDLRMA-SPSSSARRDKNTTVSLKKSSPKLRTYSKPIRRVPLSKTPKKTHSDTKKGQ 1275
Query: 327 VSSCN--EGGTSVEALEPKP--ECNGDMNFGLPGSTDPKLGTKKHP 368
+ N T+ + PK +C P ST KLG KK P
Sbjct: 1276 SKNSNYISCRTTPAVVPPKKFRQCPE------PTSTVEKLGLKKAP 1315
Score = 43 (20.2 bits), Expect = 2.1e-06, Sum P(5) = 2.1e-06
Identities = 25/99 (25%), Positives = 47/99 (47%)
Query: 163 VVDTATGVDIKVPESSQDGSNSHGVLGSDQDPSDQKRNRSRHSEANIKGEKSVDGQEEPC 222
VVDT + P++ +N L + QD +++ R + S+ N KG + +E
Sbjct: 1341 VVDTRKKTKLISPQTLSVRNNKK--LLTSQDLQFRRQMRPK-SQQNKKGLLDYESKETTR 1397
Query: 223 LLPKQRE-----IKGTEAS-HTTKG-----ANNLGKRKI 250
P+ + + +++S +++KG ANN GK+ I
Sbjct: 1398 AGPRPAQNSDILVPESDSSDYSSKGGTEVVANNTGKQLI 1436
Score = 38 (18.4 bits), Expect = 2.7e-06, Sum P(6) = 2.7e-06
Identities = 13/47 (27%), Positives = 24/47 (51%)
Query: 212 EKSVDGQEEPCLLPKQREIKGTEASHTTKGANNLGKRKIDQQKEAML 258
E+ + G E+P K K HT+ + N+ K K+ +++E +L
Sbjct: 1041 EEGILGFEKPIKQDKIGIKKEYLKQHTSIASTNVEK-KLMKEEETLL 1086
>DICTYBASE|DDB_G0268662 [details] [associations]
symbol:DDB_G0268662 "DNA2/NAM7 helicase family
protein" species:44689 "Dictyostelium discoideum" [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
InterPro:IPR003593 SMART:SM00382 dictyBase:DDB_G0268662
Pfam:PF03828 GO:GO:0005524 EMBL:AAFI02000004 GO:GO:0004386
eggNOG:COG1112 InterPro:IPR002058 ProtClustDB:CLSZ2429765
RefSeq:XP_646848.1 ProteinModelPortal:Q55F22
EnsemblProtists:DDB0304624 GeneID:8616531 KEGG:ddi:DDB_G0268662
InParanoid:Q55F22 Uniprot:Q55F22
Length = 2523
Score = 99 (39.9 bits), Expect = 3.0e-07, Sum P(5) = 3.0e-07
Identities = 20/52 (38%), Positives = 33/52 (63%)
Query: 761 LLRTLPKLCPKPRMLVCAPSNAATDELLTRVLDRGFIDGEMKVYRPDVARVG 812
LL L + PK ++LVC PS+A+ DE+ R L + ++ + K Y P++ R+G
Sbjct: 1629 LLSILLAINPKFKILVCGPSHASVDEVAKRCLKKSLVNIDGKPYLPNMVRIG 1680
Score = 82 (33.9 bits), Expect = 3.0e-07, Sum P(5) = 3.0e-07
Identities = 25/75 (33%), Positives = 40/75 (53%)
Query: 932 EEARASLEASFANEAEIVFTTVSSSGRKLFSRLTHGFDMVVIDEAAQASEVGVLPPLSLG 991
++ A +A N A I+F T+S+SG K R ++V++DE+ Q+SE L PL +G
Sbjct: 1696 DKTPAQRKAIIRN-ATIIFATLSASGSKPI-RSNFKANIVLVDESTQSSEPASLIPLCIG 1753
Query: 992 -AARCVLGGGSSAAP 1005
+ +L G P
Sbjct: 1754 NIEKLILVGDPLQLP 1768
Score = 81 (33.6 bits), Expect = 3.0e-07, Sum P(5) = 3.0e-07
Identities = 13/22 (59%), Positives = 20/22 (90%)
Query: 692 TLVQGPPGTGKTHTVWGMLNVI 713
TL+QGPPGTGKT T++ +L+++
Sbjct: 1612 TLIQGPPGTGKTTTIYYLLSIL 1633
Score = 58 (25.5 bits), Expect = 3.0e-07, Sum P(5) = 3.0e-07
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 439 FESVEEYVRVFEPLLFEECRAQLYSTWEEL 468
+ E+V + +PL+ EE RAQL + E+
Sbjct: 1384 YSDQSEFVNLMKPLIVEEYRAQLEGDFNEI 1413
Score = 41 (19.5 bits), Expect = 3.0e-07, Sum P(5) = 3.0e-07
Identities = 9/29 (31%), Positives = 14/29 (48%)
Query: 279 SLKTSTPRRQNPPVVTRTVKEARTIPSPA 307
S STP + P T T + +P+P+
Sbjct: 466 SKSPSTPLTKPTPSTTSTKSASTALPTPS 494
Score = 39 (18.8 bits), Expect = 1.0e-05, Sum P(4) = 1.0e-05
Identities = 9/20 (45%), Positives = 10/20 (50%)
Query: 625 TAILKPSPEHFPKYEHQTPT 644
TA+ PSP PK PT
Sbjct: 488 TALPTPSPTPLPKPSTPLPT 507
>UNIPROTKB|E1BAS6 [details] [associations]
symbol:SETX "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0007623 "circadian rhythm" evidence=IEA] [GO:0006369
"termination of RNA polymerase II transcription" evidence=IEA]
[GO:0006302 "double-strand break repair" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA]
InterPro:IPR026121 GO:GO:0005737 GO:GO:0005654 GO:GO:0006302
GeneTree:ENSGT00580000081652 OMA:RLINHFE PANTHER:PTHR10887:SF15
EMBL:DAAA02032276 EMBL:DAAA02032274 EMBL:DAAA02032275
IPI:IPI00842535 Ensembl:ENSBTAT00000042924 Uniprot:E1BAS6
Length = 2662
Score = 104 (41.7 bits), Expect = 3.3e-07, Sum P(7) = 3.3e-07
Identities = 35/112 (31%), Positives = 51/112 (45%)
Query: 599 VLGSLATTQREYVALHAFCRLNSQMQTAILKPSPEHFPKYEHQTPTMPECFTQNFIDHLH 658
V+ SL TTQR+ A+ N Q+ AIL P+P F T +P ++ + +L
Sbjct: 1869 VISSLVTTQRKLKAMSLLSGRN-QLARAILNPNPMDFC-----TKDLPTATSERIVAYL- 1921
Query: 659 RTFNGPQLXXXXXXXXXXXXGTSSGMTKSPWPFTLVQGPPGTGKTHTVWGML 710
+ FN Q S + K L+ GPPGTGK+ T+ G+L
Sbjct: 1922 KDFNEDQKKAIETACAMVKHSPS--VAK----ICLIHGPPGTGKSKTIVGIL 1967
Score = 78 (32.5 bits), Expect = 3.3e-07, Sum P(7) = 3.3e-07
Identities = 23/66 (34%), Positives = 31/66 (46%)
Query: 945 EAEIVFTTVSSSGRKLFSRLTHG-----FDMVVIDEAAQASEVGVLPPLSLGAARCVLGG 999
E+ I+ T+S+SG L G F V++DEA Q+ EV L PL + VL G
Sbjct: 2137 ESHIICCTLSTSGGLLLEAAFRGQGGVPFSCVIVDEAGQSCEVETLTPLIHRCNKLVLVG 2196
Query: 1000 GSSAAP 1005
P
Sbjct: 2197 DPKQLP 2202
Score = 75 (31.5 bits), Expect = 3.3e-07, Sum P(7) = 3.3e-07
Identities = 13/20 (65%), Positives = 18/20 (90%)
Query: 773 RMLVCAPSNAATDELLTRVL 792
R+LVCAPSNAA DEL+ +++
Sbjct: 1992 RVLVCAPSNAAVDELMKKII 2011
Score = 55 (24.4 bits), Expect = 3.3e-07, Sum P(7) = 3.3e-07
Identities = 48/208 (23%), Positives = 80/208 (38%)
Query: 173 KVPESSQDGSNSHGVLGSDQD--PSDQKRNRSRHSEANIKGEKSVDGQEEPCLL----PK 226
K P S+ G +++ LG + D P + + + + E K S EE C + PK
Sbjct: 1106 KNPCSTHVGDSAND-LGYETDYVPEEVIKKVAENFEERTKPRSSSTSVEEFCEIEVKKPK 1164
Query: 227 QREIKGTEASHTTKGANNLGKRKIDQQKEAMLGKKRNRQTVFLNLEDVKQAGSLKTST-- 284
+R + A + +++ K + DQ G ++ + S++ +T
Sbjct: 1165 RRRYEKPIAEDPLRPSSSSVKNE-DQSDILNKGNLSKNDFKGVDARSTVPSSSVQRNTVV 1223
Query: 285 -PRRQNPPVVTRTVKEARTIPSPAERGGEKQSQAINKDQ-KQYDVSSCNEGGTSVEALEP 342
P++ P + K R +P + +K K Q K SC T+ + P
Sbjct: 1224 SPKKSLPKPRMYS-KPVRKVP--VVKASKKSHSDTKKGQSKSSHYISCR---TTPAIVPP 1277
Query: 343 KP--ECNGDMNFGLPGSTDPKLGTKKHP 368
K +C P ST KLG KK P
Sbjct: 1278 KKFRQCPE------PTSTVEKLGLKKAP 1299
Score = 50 (22.7 bits), Expect = 3.3e-07, Sum P(7) = 3.3e-07
Identities = 15/70 (21%), Positives = 30/70 (42%)
Query: 435 VPGRFESVEEYVRVFEPLLFEECRAQLYSTWEELTETGSRDTHVMVRIRNIERRERGWYD 494
VP RF+ +Y VF PL+ + W ++ H + +R + +++
Sbjct: 1723 VPIRFQDCGDYFNVFFPLMVLNTFETVAQEW--ISSPNKEKFH-QLHLRKFPGDYKKYWE 1779
Query: 495 VIVLPVNECK 504
+V + EC+
Sbjct: 1780 FVVY-LEECE 1788
Score = 46 (21.3 bits), Expect = 3.3e-07, Sum P(7) = 3.3e-07
Identities = 40/148 (27%), Positives = 61/148 (41%)
Query: 54 IINNNAFSHAPSVSGFQPFNRA----KAAQGHGVEVEPKKAEDQNRRVASSSSKPGNGED 109
II N F P S F N A A+ E KK+E ++ +SS + E
Sbjct: 591 IIRNIKFK-VPQCSTFVDLNPACKMPPASYKEESEQIGKKSE-KDVHCLENSSPTSSKEP 648
Query: 110 IKA----ASSSVPGSENAAADEREEGEW-SDA--EGSVDAYASNLLNEQGKASQGQGVSE 162
+KA S+ N A +E +E + D EG + A + L+ + A + V
Sbjct: 649 MKADAYQVQESILSKANNAIEESKEPYYIKDLKLEGHLSAESCLKLSSKNLACER--VQN 706
Query: 163 VVDTATGVDIKVPESS----QDGSNSHG 186
V +TG V E+S Q+G+ +G
Sbjct: 707 QVKISTGKYKSVKENSSCTPQNGTLRNG 734
Score = 44 (20.5 bits), Expect = 1.5e-06, Sum P(6) = 1.5e-06
Identities = 16/69 (23%), Positives = 29/69 (42%)
Query: 175 PESSQDGSNSHGVLGSDQDPSDQ------KRNRSRHSEANIKGEKSVDGQEEPCLLPKQR 228
P+ S D + + +DP D +R + E I G+ +V G+EE P+
Sbjct: 1474 PQFSSD-IEEDDIFLTQRDPEDMDLCSQIERENDKLIEV-IHGKDTVQGEEECVSQPQLE 1531
Query: 229 EIKGTEASH 237
+ T+ +
Sbjct: 1532 SLSSTKCKY 1540
Score = 44 (20.5 bits), Expect = 0.00020, Sum P(7) = 0.00020
Identities = 23/97 (23%), Positives = 45/97 (46%)
Query: 737 PNESNSDNVSMGSID-EVLQNMDQNLLRTLPKLCPKPRMLVCAPSNAATDELLT-RVLDR 794
P +S ++ V S+D +V M ++L + ++ + L + DEL R L R
Sbjct: 2038 PEKSINNEVLKFSLDSQVNHRMKKDLPSHVQEMHKRKEFL-----DHQLDELSRQRALCR 2092
Query: 795 GFIDGEMKVYRPDVARVGVDSQTRAAQAVSVERRTEQ 831
G + + + +ARV + Q A++ V+ R ++
Sbjct: 2093 GGRESQRQELDGKIARVSKERQELASKIKEVQGRPQK 2129
Score = 43 (20.2 bits), Expect = 4.1e-06, Sum P(7) = 4.1e-06
Identities = 8/23 (34%), Positives = 16/23 (69%)
Query: 209 IKGEKSVDGQEEPCLLPKQREIK 231
I +K+ + + + CLL K++E+K
Sbjct: 845 ILDDKNGEQKSQSCLLLKKKEVK 867
Score = 37 (18.1 bits), Expect = 3.3e-07, Sum P(7) = 3.3e-07
Identities = 10/27 (37%), Positives = 17/27 (62%)
Query: 409 RTLLRIVTLKGHGK---IYDASEESEL 432
R+L IV L+ HGK + D ++++L
Sbjct: 1308 RSLECIVQLRDHGKTVGVVDTRKKTKL 1334
Score = 37 (18.1 bits), Expect = 5.6e-05, Sum P(4) = 5.6e-05
Identities = 6/18 (33%), Positives = 12/18 (66%)
Query: 126 DEREEGEWSDAEGSVDAY 143
+E+++ EWS E + + Y
Sbjct: 1810 EEKKDLEWSHLEDACEYY 1827
>UNIPROTKB|D4AEB3 [details] [associations]
symbol:Setx "Protein Setx" species:10116 "Rattus
norvegicus" [GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0006302 "double-strand break repair"
evidence=IEA] [GO:0006369 "termination of RNA polymerase II
transcription" evidence=IEA] [GO:0007623 "circadian rhythm"
evidence=IEA] InterPro:IPR026121 RGD:1565575 GO:GO:0005737
GO:GO:0005654 GO:GO:0006302 KO:K10706 GeneTree:ENSGT00580000081652
CTD:23064 OMA:RLINHFE OrthoDB:EOG4XWFWX PANTHER:PTHR10887:SF15
IPI:IPI00476851 RefSeq:XP_342401.3 ProteinModelPortal:D4AEB3
PRIDE:D4AEB3 Ensembl:ENSRNOT00000017984 GeneID:362096
KEGG:rno:362096 NextBio:678646 ArrayExpress:D4AEB3 Uniprot:D4AEB3
Length = 2647
Score = 100 (40.3 bits), Expect = 3.7e-07, Sum P(5) = 3.7e-07
Identities = 35/112 (31%), Positives = 51/112 (45%)
Query: 599 VLGSLATTQREYVALHAFCRLNSQMQTAILKPSPEHFPKYEHQTPTMPECFTQNFIDHLH 658
V+ SL TTQR+ A+ N Q+ A+L P+P F + T T ++ I +L
Sbjct: 1856 VISSLVTTQRKLKAMSLLSGRN-QLARAVLNPNPMDFCTKDLLTTT-----SERIIAYL- 1908
Query: 659 RTFNGPQLXXXXXXXXXXXXGTSSGMTKSPWPFTLVQGPPGTGKTHTVWGML 710
+ FN Q S + K L+ GPPGTGK+ T+ G+L
Sbjct: 1909 KDFNEDQKKAIETAYAMVKHSPS--VAK----ICLIHGPPGTGKSKTIVGLL 1954
Score = 77 (32.2 bits), Expect = 3.7e-07, Sum P(5) = 3.7e-07
Identities = 22/66 (33%), Positives = 31/66 (46%)
Query: 945 EAEIVFTTVSSSGRKLFSRLTHG-----FDMVVIDEAAQASEVGVLPPLSLGAARCVLGG 999
E+ ++ T+S+SG L G F V++DEA Q+ EV L PL + VL G
Sbjct: 2124 ESHVICCTLSTSGGLLLESAFRGQGGVPFSCVIVDEAGQSCEVETLSPLIHRCNKLVLVG 2183
Query: 1000 GSSAAP 1005
P
Sbjct: 2184 DPKQLP 2189
Score = 75 (31.5 bits), Expect = 3.7e-07, Sum P(5) = 3.7e-07
Identities = 13/20 (65%), Positives = 18/20 (90%)
Query: 773 RMLVCAPSNAATDELLTRVL 792
R+LVCAPSNAA DEL+ +++
Sbjct: 1979 RVLVCAPSNAAVDELMKKII 1998
Score = 68 (29.0 bits), Expect = 3.7e-07, Sum P(5) = 3.7e-07
Identities = 93/447 (20%), Positives = 161/447 (36%)
Query: 97 VASSSSKPGN--GEDIKAASSS---VPGS-ENAAADEREEGEWSDAEGS-VDAYASNLLN 149
+A+ S +P N G + A SS G+ A E G W V+ S +L+
Sbjct: 1374 LAADSDEPDNPGGSEPLAISSEKQLAKGTLSKAEVAEAASGPWGTGITCLVNQCESRVLS 1433
Query: 150 E-------QGKASQ---GQGVSEV-VDTATGVDIKVPESSQDGSNSHGVLGSDQDPSDQK 198
G AS+ G G V V V PESS D + + + DP D
Sbjct: 1434 GGVPTDVLMGSASEDPVGGGALTVQVGEVAAVRAAEPESSSDTDDDDNLFLTQHDPQDMD 1493
Query: 199 R-NRSRHSEANIKGEKSVDGQEEPCLLPKQREIKGTEASHTTKGANNLGKRKIDQQKEAM 257
++ +S+A I K +E+ P+ + + + K K + + +
Sbjct: 1494 LCSQLENSKAIIVAHKDTVQREDSLSRPQLESLSIIKCKY--KDCVETTKNQGEYCPKHS 1551
Query: 258 LGKKRNRQTVFLNLE-DVKQAGSLKTSTPRRQNPPVVTRTVKEARTIPSPAERGGEK-QS 315
K + VF + A S + +T + + +RT ++++ S + K +S
Sbjct: 1552 EAKAAD-DDVFRKPGLPLSVARSSRPTTTKIFSSSSASRTANLSKSLESTTLQSALKNKS 1610
Query: 316 QAINKDQKQYDVSSCNEGGTSVEALEPKPECNGDMNFGLPGSTDP---KLGTKKHPPAKK 372
+ K SS G+ E K CN +F P S+ K ++ PA
Sbjct: 1611 SGAQSNLKMTPSSSL---GSQKPVAEVKSLCN-IFHFQTPSSSSKQSYKFTFSENRPASA 1666
Query: 373 QTATANLYQDTSV-ERLIREVTNEKFWHHPVVHVPPIRTLLRIVTLKGHGKIYDASEESE 431
++ L S+ + I+EV K+ + L + +S
Sbjct: 1667 ASSVDILLPSQSIFDTFIKEVLKWKY-----------QMFLNFDKCGAPTSLC----QSI 1711
Query: 432 LQCVPGRFESVEEYVRVFEPLLFEECRAQLYSTWEELTETGSRDTHVMVRIRNIERR-ER 490
+ VP RF+ EY VF PL+ + W + +++ + +R ++
Sbjct: 1712 SRPVPVRFQDCAEYFNVFLPLIILNAFETVAQEW---LNSPNKENFYQLHLRKFPADYKK 1768
Query: 491 GWYDVIVLPVNECKWSF--KEGDVAVL 515
W +I L +E KE D+ L
Sbjct: 1769 YWEFLIYLEESELAKQLHPKENDLVFL 1795
Score = 50 (22.7 bits), Expect = 6.4e-06, Sum P(5) = 6.4e-06
Identities = 41/193 (21%), Positives = 75/193 (38%)
Query: 84 EVEPKKAEDQNRRVASSSSKPGNGEDIKAASSSVPGSENAAADEREEGEWSDAEGSVDAY 143
+++ K +D + + + S P E +KA S VP +A +E + D
Sbjct: 624 QIDRKPKKDIHS-LGNCSPIPSK-EPMKADSHRVPTKASATEEEDFTQHYIDLNEEEPLP 681
Query: 144 ASNLLNEQGKASQGQGVSEVVDTATGVDIKVPESSQDGSNSHGVLGSDQDPSDQKRNRSR 203
A + ++ +A + E V +T K SS NS G + D+ S
Sbjct: 682 AELGVKQKSEALLSESAPEQVKISTEKSGK-ENSSYTAPNSTSRSGPEWG-CDRGVIIST 739
Query: 204 HSEANIKGEKSVDGQEEPCLLPKQREIKGTEASHTTKGANNLGKRKIDQQKEAMLGKKRN 263
HS + S D E+ +K T+K + K +I + +L K+
Sbjct: 740 HSLT----DSSSDFLEKVSTSNGDVPLKDGTVGKTSKPNFKVQKDEICAKLSHVLKKQHR 795
Query: 264 RQTVFLNLEDVKQ 276
+ T+ N+ D+++
Sbjct: 796 KSTLVNNIIDLEE 808
Score = 50 (22.7 bits), Expect = 9.6e-06, Sum P(4) = 9.6e-06
Identities = 18/64 (28%), Positives = 30/64 (46%)
Query: 106 NGEDIKAASSSVPGSENAAADEREEGEWSDAEGSVDAYASNLLNEQGKASQGQGVSEVVD 165
N + ++A S V GS+ AAD E D G + A + + K + + +EV +
Sbjct: 1357 NTDSVRAVSRVVQGSDVLAADSDEP----DNPGGSEPLAISSEKQLAKGTLSK--AEVAE 1410
Query: 166 TATG 169
A+G
Sbjct: 1411 AASG 1414
Score = 48 (22.0 bits), Expect = 1.5e-05, Sum P(4) = 1.5e-05
Identities = 44/202 (21%), Positives = 84/202 (41%)
Query: 180 DGSNSHGVLGSDQDPSDQKRNRSRHSEANIKGEKSVDGQEEPCLL----PKQREIKGTEA 235
D +N++ G+D + RN+ + + + + SV E C + PK++ A
Sbjct: 1103 DSTNNNLGCGADSVSEEVVRNKEKGVKEHAEPHSSVSA-EGFCKIGVRKPKRKRCDKVTA 1161
Query: 236 SHTTKGANNLGKRKIDQQKEAMLGKKRNRQTVFLNL----EDVKQAGSL--KTST-PRRQ 288
+ ++++ ++ + ++ +R+ ++ +++ V++ ++ K ST PR
Sbjct: 1162 EDPQRPSSSVRTEQLAEHRDL---PERDLESADVDMAAPSSSVERDSTVLQKKSTKPRPH 1218
Query: 289 NPPVVTRTVKEARTIPSPAERGGEKQSQAINKDQKQYDVSSCNEGGTSVEALEPKP--EC 346
+ PV +A P R G+ +S Y SC TS + PK +C
Sbjct: 1219 SKPVRKVPASKATKKTHPDTRRGQTKSSC-------Y--ISCR---TSPAIVPPKKFRQC 1266
Query: 347 NGDMNFGLPGSTDPKLGTKKHP 368
P ST KLG KK P
Sbjct: 1267 PE------PTSTVEKLGLKKGP 1282
Score = 46 (21.3 bits), Expect = 6.4e-06, Sum P(5) = 6.4e-06
Identities = 22/106 (20%), Positives = 40/106 (37%)
Query: 275 KQAGSLKTSTPRRQNPPVVTRTVKEARTIPSPAERGGEKQSQAINKDQKQYDVSSCNEGG 334
K+ + P+R + V T + E R +P E+ ++ + D SS
Sbjct: 1154 KRCDKVTAEDPQRPSSSVRTEQLAEHRDLP-------ERDLESADVDMAAPS-SSVERDS 1205
Query: 335 TSVEALEPKPECNGDMNFGLPGSTDPKLGTKKHPPAKKQTATANLY 380
T ++ KP + +P S K K HP ++ ++ Y
Sbjct: 1206 TVLQKKSTKPRPHSKPVRKVPASKATK---KTHPDTRRGQTKSSCY 1248
Score = 41 (19.5 bits), Expect = 3.7e-07, Sum P(5) = 3.7e-07
Identities = 16/64 (25%), Positives = 25/64 (39%)
Query: 79 QGHGVEVEPKKAEDQNRRVA----SSSSKPGNGEDIKAASSSVPGSENAAADEREEGEWS 134
Q H ++ + EDQ +A S+++ G G D + V E + E
Sbjct: 1080 QDHKIDSKSSLQEDQKSCIAHVADSTNNNLGCGAD-SVSEEVVRNKEKGVKEHAEPHSSV 1138
Query: 135 DAEG 138
AEG
Sbjct: 1139 SAEG 1142
Score = 39 (18.8 bits), Expect = 0.00011, Sum P(4) = 0.00011
Identities = 10/32 (31%), Positives = 19/32 (59%)
Query: 304 PSPAERGGEKQSQAINKDQ--KQYDVSSCNEG 333
P PAE G +++S+A+ + +Q +S+ G
Sbjct: 679 PLPAELGVKQKSEALLSESAPEQVKISTEKSG 710
>UNIPROTKB|Q7Z333 [details] [associations]
symbol:SETX "Probable helicase senataxin" species:9606
"Homo sapiens" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008219
"cell death" evidence=IEA] [GO:0006369 "termination of RNA
polymerase II transcription" evidence=IEA] [GO:0007623 "circadian
rhythm" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IC] [GO:0003678 "DNA helicase
activity" evidence=TAS] [GO:0006396 "RNA processing" evidence=TAS]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005654 "nucleoplasm"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0006302
"double-strand break repair" evidence=IDA] [GO:0032508 "DNA duplex
unwinding" evidence=TAS] InterPro:IPR026121 GO:GO:0005524
GO:GO:0005737 GO:GO:0005654 GO:GO:0005730 GO:GO:0003677
GO:GO:0008219 GO:GO:0006396 GO:GO:0006302 Orphanet:803
eggNOG:COG1112 GO:GO:0003678 KO:K10706 EMBL:AL159997 Orphanet:64753
EMBL:AY362728 EMBL:BX537849 EMBL:BX538166 EMBL:CR749249
EMBL:AL353701 EMBL:BC032600 EMBL:BC032622 EMBL:BC078166
EMBL:BC106017 EMBL:BC137350 EMBL:AB014525 EMBL:AK001456
EMBL:AK022902 IPI:IPI00142538 IPI:IPI00646645 IPI:IPI00719643
RefSeq:NP_055861.3 UniGene:Hs.460317 ProteinModelPortal:Q7Z333
SMR:Q7Z333 IntAct:Q7Z333 STRING:Q7Z333 PhosphoSite:Q7Z333
DMDM:296453021 PaxDb:Q7Z333 PRIDE:Q7Z333 Ensembl:ENST00000224140
Ensembl:ENST00000372169 Ensembl:ENST00000393220
Ensembl:ENST00000436441 GeneID:23064 KEGG:hsa:23064 UCSC:uc004cbj.3
UCSC:uc004cbk.3 UCSC:uc010mzt.3 CTD:23064 GeneCards:GC09M135136
HGNC:HGNC:445 HPA:HPA024105 MIM:602433 MIM:606002 MIM:608465
neXtProt:NX_Q7Z333 PharmGKB:PA24751 HOVERGEN:HBG108476
InParanoid:Q7Z333 OMA:RLINHFE OrthoDB:EOG4XWFWX PhylomeDB:Q7Z333
ChiTaRS:SETX GenomeRNAi:23064 NextBio:44145 ArrayExpress:Q7Z333
Bgee:Q7Z333 Genevestigator:Q7Z333 GermOnline:ENSG00000107290
PANTHER:PTHR10887:SF15 Uniprot:Q7Z333
Length = 2677
Score = 102 (41.0 bits), Expect = 7.5e-07, Sum P(5) = 7.5e-07
Identities = 36/112 (32%), Positives = 51/112 (45%)
Query: 599 VLGSLATTQREYVALHAFCRLNSQMQTAILKPSPEHFPKYEHQTPTMPECFTQNFIDHLH 658
V+ SL TTQR+ A+ N Q+ A+L P+P F + T T ++ I +L
Sbjct: 1879 VISSLVTTQRKLKAMSLLGSRN-QLARAVLNPNPMDFCTKDLLTTT-----SERIIAYL- 1931
Query: 659 RTFNGPQLXXXXXXXXXXXXGTSSGMTKSPWPFTLVQGPPGTGKTHTVWGML 710
R FN Q S + K L+ GPPGTGK+ T+ G+L
Sbjct: 1932 RDFNEDQKKAIETAYAMVKHSPS--VAK----ICLIHGPPGTGKSKTIVGLL 1977
Score = 76 (31.8 bits), Expect = 7.5e-07, Sum P(5) = 7.5e-07
Identities = 21/66 (31%), Positives = 31/66 (46%)
Query: 945 EAEIVFTTVSSSGRKLFSRLTHG-----FDMVVIDEAAQASEVGVLPPLSLGAARCVLGG 999
E+ I+ T+S+SG L G F V++DEA Q+ E+ L PL + +L G
Sbjct: 2147 ESHIICCTLSTSGGLLLESAFRGQGGVPFSCVIVDEAGQSCEIETLTPLIHRCNKLILVG 2206
Query: 1000 GSSAAP 1005
P
Sbjct: 2207 DPKQLP 2212
Score = 75 (31.5 bits), Expect = 7.5e-07, Sum P(5) = 7.5e-07
Identities = 13/20 (65%), Positives = 18/20 (90%)
Query: 773 RMLVCAPSNAATDELLTRVL 792
R+LVCAPSNAA DEL+ +++
Sbjct: 2002 RVLVCAPSNAAVDELMKKII 2021
Score = 53 (23.7 bits), Expect = 7.5e-07, Sum P(5) = 7.5e-07
Identities = 20/89 (22%), Positives = 38/89 (42%)
Query: 435 VPGRFESVEEYVRVFEPLLFEECRAQLYSTWEELTETGSRDTHVMVRIRNIERRERGWYD 494
VP RF + +Y VF PL+ + W + +R+ +++R +++
Sbjct: 1733 VPVRFHNYGDYFNVFFPLMVLNTFETVAQEW---LNSPNRENFYQLQVRKFPADYIKYWE 1789
Query: 495 VIVLPVNECKWSF----KEGDVAVLSTPR 519
V + EC+ + KE D+ L+ R
Sbjct: 1790 FAVY-LEECELAKQLYPKENDLVFLAPER 1817
Score = 52 (23.4 bits), Expect = 7.5e-07, Sum P(5) = 7.5e-07
Identities = 17/68 (25%), Positives = 30/68 (44%)
Query: 175 PESSQDGSNSHGVLGSDQDPSD-----QKRNRSRHSEANIKGEKSVDGQEEPCLLPKQRE 229
P+SS D + L + DP D Q N + I G+ +V+ +E+ P+
Sbjct: 1485 PDSSSDAEEDNLFL-TQNDPEDMDLCSQMENDNYKLIELIHGKDTVEVEEDSVSRPQLES 1543
Query: 230 IKGTEASH 237
+ GT+ +
Sbjct: 1544 LSGTKCKY 1551
Score = 50 (22.7 bits), Expect = 2.0e-06, Sum P(6) = 2.0e-06
Identities = 33/166 (19%), Positives = 68/166 (40%)
Query: 186 GVLGSDQDPSDQKRNRSRHSEANIKGEKSV--DGQEEPCLLPKQREIKGTEASHTTKGAN 243
GVL D++ + +N E +K E+ V E C + ++ + G E T+
Sbjct: 847 GVL-DDKNGEQKSQNNVLPKEKQLKNEELVIFSFHENNCKI-QEFHVDGKELIPFTE-MT 903
Query: 244 NLGKRKIDQQKEAM-LGKKRNRQ------TVFLNLE-----DVK-QAGSLKTSTPRRQNP 290
N ++K K+ M + + R+ + ++ NL D+ ++ +L S R
Sbjct: 904 NASEKKSSPFKDLMTVPESRDEEMSNSTSVIYSNLTREQAPDISPKSDTLTDSQIDRDLH 963
Query: 291 PVVTRTVKEARTIPSPAERGGEKQSQAINKDQKQYDVSSCNEGGTS 336
+ T PS + + + + + +D++ + + N G TS
Sbjct: 964 KLSLLAQASVITFPSDSPQNSSQLQRKVKEDKRCFTANQNNVGDTS 1009
Score = 40 (19.1 bits), Expect = 2.0e-06, Sum P(6) = 2.0e-06
Identities = 9/14 (64%), Positives = 9/14 (64%)
Query: 355 PGSTDPKLGTKKHP 368
P ST KLG KK P
Sbjct: 1280 PTSTAEKLGLKKGP 1293
Score = 40 (19.1 bits), Expect = 1.0e-05, Sum P(5) = 1.0e-05
Identities = 10/21 (47%), Positives = 11/21 (52%)
Query: 166 TATGVDIKVPESSQDGSNSHG 186
TA DI VPES + N G
Sbjct: 1380 TAQNSDIFVPESDRSDYNCTG 1400
Score = 38 (18.4 bits), Expect = 2.5e-05, Sum P(6) = 2.5e-05
Identities = 6/28 (21%), Positives = 18/28 (64%)
Query: 207 ANIKGEKSVDGQEEPCLLPKQREIKGTE 234
+ + +K+ + + + +LPK++++K E
Sbjct: 846 SGVLDDKNGEQKSQNNVLPKEKQLKNEE 873
>DICTYBASE|DDB_G0268924 [details] [associations]
symbol:DDB_G0268924 "Helicase SEN1" species:44689
"Dictyostelium discoideum" [GO:0017111 "nucleoside-triphosphatase
activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR003593 SMART:SM00382 dictyBase:DDB_G0268924
GO:GO:0005524 EMBL:AAFI02000004 GO:GO:0017111 eggNOG:COG1112
ProtClustDB:CLSZ2429765 RefSeq:XP_646844.2
ProteinModelPortal:Q55F26 EnsemblProtists:DDB0202279 GeneID:8616527
KEGG:ddi:DDB_G0268924 InParanoid:Q55F26 Uniprot:Q55F26
Length = 1772
Score = 91 (37.1 bits), Expect = 2.5e-06, Sum P(5) = 2.5e-06
Identities = 21/72 (29%), Positives = 42/72 (58%)
Query: 761 LLRTLPKLCPKPRMLVCAPSNAATDELLTRVLDRGFIDGEMKVYRPDVARVGV-DSQTRA 819
LL L + P+ ++LVC PS+A+ DE+ R + I + K Y P++ R+G ++ +
Sbjct: 1278 LLSILLAINPEFKILVCGPSHASVDEIAKRCSKKKLIGLDGKPYLPNMVRIGKKENISPD 1337
Query: 820 AQAVSVERRTEQ 831
++S+ +T++
Sbjct: 1338 CHSISIFNKTQR 1349
Score = 81 (33.6 bits), Expect = 2.5e-06, Sum P(5) = 2.5e-06
Identities = 13/22 (59%), Positives = 20/22 (90%)
Query: 692 TLVQGPPGTGKTHTVWGMLNVI 713
TL+QGPPGTGKT T++ +L+++
Sbjct: 1261 TLIQGPPGTGKTTTIYYLLSIL 1282
Score = 75 (31.5 bits), Expect = 2.5e-06, Sum P(5) = 2.5e-06
Identities = 19/61 (31%), Positives = 33/61 (54%)
Query: 946 AEIVFTTVSSSGRKLFSRLTHGFDMVVIDEAAQASEVGVLPPLSLG-AARCVLGGGSSAA 1004
A IVF+T+S SG + D++++DE+ Q++E + PL +G + +L G
Sbjct: 1358 ASIVFSTLSGSGSETVKNNFRA-DIILVDESTQSTEPSSIIPLCIGNIEKLILVGDPLQL 1416
Query: 1005 P 1005
P
Sbjct: 1417 P 1417
Score = 59 (25.8 bits), Expect = 2.5e-06, Sum P(5) = 2.5e-06
Identities = 11/30 (36%), Positives = 20/30 (66%)
Query: 439 FESVEEYVRVFEPLLFEECRAQLYSTWEEL 468
+ + EEY+ + +PL+ EE R QL ++E+
Sbjct: 1025 YSNHEEYMDLMKPLIVEEYRKQLAGEFDEI 1054
Score = 38 (18.4 bits), Expect = 2.5e-06, Sum P(5) = 2.5e-06
Identities = 20/74 (27%), Positives = 29/74 (39%)
Query: 255 EAMLGKKRNRQTVFLNLEDVKQAGSLK-TSTPRRQNPPVVTRTVKEARTIPS---PAERG 310
EA K+ QT+ + + V + SL T+T T T T+PS P G
Sbjct: 625 EAQPTIKQIPQTI-ASTKSVIEPDSLSPTTTTTTTTTTTTTTTTPTTTTLPSLPAPINPG 683
Query: 311 GEKQSQAINKDQKQ 324
++Q K Q
Sbjct: 684 KPNEAQPTIKQIPQ 697
>DICTYBASE|DDB_G0268914 [details] [associations]
symbol:DDB_G0268914 species:44689 "Dictyostelium
discoideum" [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR003593
SMART:SM00382 dictyBase:DDB_G0268914 GO:GO:0005524
EMBL:AAFI02000004 GO:GO:0017111 eggNOG:COG1112 RefSeq:XP_647058.1
ProteinModelPortal:Q55EG2 EnsemblProtists:DDB0190122 GeneID:8616757
KEGG:ddi:DDB_G0268914 InParanoid:Q55EG2 OMA:ANCRVEN Uniprot:Q55EG2
Length = 4540
Score = 94 (38.1 bits), Expect = 5.6e-06, Sum P(6) = 5.6e-06
Identities = 18/54 (33%), Positives = 34/54 (62%)
Query: 760 NLLRTLPKLCPKPRMLVCAPSNAATDELLTRVLDRGFIDGEMKVYRPDVARVGV 813
+L+ + + P ++LVC PS+AA DE+ RV+ +G ++ + Y P + R+G+
Sbjct: 3590 SLISIILAINPDFKILVCGPSHAAVDEVAKRVIIKGLLNDRGEKYIPTMVRIGL 3643
Score = 91 (37.1 bits), Expect = 5.6e-06, Sum P(6) = 5.6e-06
Identities = 30/91 (32%), Positives = 46/91 (50%)
Query: 928 NFNLEEARASLEASFANEAEIVFTTVSSSGRKLFSRLTHGFDMVVIDEAAQASEVGVLPP 987
N L+E + LE S I F+T+S+SG L + ++V++DEA Q+ E + P
Sbjct: 3659 NRRLDEKKMILEHS-----SICFSTLSASGSNLVQS-SFKPNVVIVDEATQSCETSCIIP 3712
Query: 988 LSLGAA---RCVLGGGSSAAPCNSYQQGSRH 1015
LSLGA + +L G P + + S H
Sbjct: 3713 LSLGAKSMKKLILVGDPVQLPPTIFSKESIH 3743
Score = 90 (36.7 bits), Expect = 5.6e-06, Sum P(6) = 5.6e-06
Identities = 14/22 (63%), Positives = 20/22 (90%)
Query: 692 TLVQGPPGTGKTHTVWGMLNVI 713
TL+QGPPGTGKTHT+ ++++I
Sbjct: 3574 TLIQGPPGTGKTHTITSLISII 3595
Score = 50 (22.7 bits), Expect = 5.6e-06, Sum P(6) = 5.6e-06
Identities = 10/30 (33%), Positives = 18/30 (60%)
Query: 439 FESVEEYVRVFEPLLFEECRAQLYSTWEEL 468
+E+ EY F+P+L EE R L + + ++
Sbjct: 3339 YENHMEYKNSFKPILVEEFRKTLETNFNDI 3368
Score = 43 (20.2 bits), Expect = 5.6e-06, Sum P(6) = 5.6e-06
Identities = 9/34 (26%), Positives = 18/34 (52%)
Query: 174 VPESSQDGSNSHGVLGSDQDPSDQKRNRSRHSEA 207
VP GS++H + + S +K N++ +E+
Sbjct: 3108 VPGGGGGGSSNHNDNSKNNNNSSKKNNKNGDNES 3141
Score = 38 (18.4 bits), Expect = 1.6e-05, Sum P(6) = 1.6e-05
Identities = 12/48 (25%), Positives = 24/48 (50%)
Query: 280 LKTSTP-RRQNPPVVTRTVKEARTI--PSPAERGGEKQSQAINKDQKQ 324
L+ P ++Q PP + ++ T P+P + ++Q Q + Q+Q
Sbjct: 238 LQQQQPTQQQQPPQQQQPTQQQPTPQQPTPQQPTPQQQPQPQQQQQQQ 285
Score = 37 (18.1 bits), Expect = 5.6e-06, Sum P(6) = 5.6e-06
Identities = 8/18 (44%), Positives = 12/18 (66%)
Query: 25 IFSSQPQKALPSANPHTS 42
IFSS P + S++P T+
Sbjct: 2503 IFSSFPPMQISSSSPTTT 2520
Score = 37 (18.1 bits), Expect = 1.6e-05, Sum P(6) = 1.6e-05
Identities = 8/38 (21%), Positives = 18/38 (47%)
Query: 160 VSEVVDTATGVDIKVPESSQDGSNSHGVLGSDQDPSDQ 197
+ ++V + K P+ + + N+ VL +D D+
Sbjct: 18 IGKMVTIVEDIISKYPDFNDELENAKYVLAESKDEQDR 55
>TAIR|locus:2166183 [details] [associations]
symbol:AT5G37160 species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0016787
"hydrolase activity" evidence=IEA] EMBL:CP002688 GO:GO:0004519
KO:K10706 IPI:IPI00521499 RefSeq:NP_198532.1 UniGene:At.55177
ProteinModelPortal:F4K5W6 SMR:F4K5W6 PRIDE:F4K5W6
EnsemblPlants:AT5G37160.1 GeneID:833689 KEGG:ath:AT5G37160
OMA:WAELISE Uniprot:F4K5W6
Length = 871
Score = 105 (42.0 bits), Expect = 1.7e-05, Sum P(4) = 1.7e-05
Identities = 31/98 (31%), Positives = 52/98 (53%)
Query: 425 DASEESELQCVPGRFESVEEYVRVFEPLLFEECRAQLYSTWEELTETG-SRDTHVMVRIR 483
D S+E ++ +P RF SV+EY + F P L EE R +L+S++ L+++ SR V ++
Sbjct: 34 DLSKE-KIMTIPDRFSSVDEYSQCFVPHLLEETRTELFSSFRSLSKSPVSRILSVETKVI 92
Query: 484 NIERRER-GWY-DVIVLPVNECKWSFKE---GDVAVLS 516
R W+ D+ ++ + K E GD+ LS
Sbjct: 93 EYSGRSSIKWFHDIKLMDYADDKNEIYEPKCGDIIALS 130
Score = 64 (27.6 bits), Expect = 1.7e-05, Sum P(4) = 1.7e-05
Identities = 12/21 (57%), Positives = 16/21 (76%)
Query: 693 LVQGPPGTGKTHTVWGMLNVI 713
L+ GPPGTGKT TV +L+ +
Sbjct: 269 LIWGPPGTGKTKTVATLLSTL 289
Score = 62 (26.9 bits), Expect = 1.7e-05, Sum P(4) = 1.7e-05
Identities = 20/61 (32%), Positives = 29/61 (47%)
Query: 946 AEIVFTTVSSSGRKLFSRLTHGFDMVVIDEAAQASEVGVLPPLSL-GAARCVLGGGSSAA 1004
A+I+F T SS +R+ D++V+DE AQ E + L L G +L G
Sbjct: 539 ADIIFCTASSVANINPARIG-SVDLLVVDETAQLKECESVAALQLPGLCHALLIGDEYQL 597
Query: 1005 P 1005
P
Sbjct: 598 P 598
Score = 48 (22.0 bits), Expect = 1.7e-05, Sum P(4) = 1.7e-05
Identities = 8/16 (50%), Positives = 14/16 (87%)
Query: 775 LVCAPSNAATDELLTR 790
+VCAP+N+A E+++R
Sbjct: 321 IVCAPTNSAIAEVVSR 336
>DICTYBASE|DDB_G0288923 [details] [associations]
symbol:upf1 "regulator of nonsense transcripts 1"
species:44689 "Dictyostelium discoideum" [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA;ISS]
[GO:0005524 "ATP binding" evidence=IEA;IC] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0000184 "nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=IEA;ISS] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0003676
"nucleic acid binding" evidence=ISS] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR018999 Pfam:PF09416 dictyBase:DDB_G0288923
GO:GO:0005524 GO:GO:0005737 GO:GO:0000184 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 EMBL:AAFI02000126
GenomeReviews:CM000154_GR GO:GO:0003676 eggNOG:COG1112
GO:GO:0004004 KO:K14326 RefSeq:XP_636490.1
ProteinModelPortal:Q54I89 SMR:Q54I89 STRING:Q54I89
EnsemblProtists:DDB0233746 GeneID:8626873 KEGG:ddi:DDB_G0288923
InParanoid:Q54I89 Uniprot:Q54I89
Length = 1331
Score = 85 (35.0 bits), Expect = 0.00015, Sum P(4) = 0.00015
Identities = 21/65 (32%), Positives = 35/65 (53%)
Query: 935 RASLEASFANEAEIVFTTVSSSGRKLFSRLTHGFDMVVIDEAAQASEVGVLPPLSLGAAR 994
R +E + +A+++ T +G S+ F ++IDE+ QASE L PL +GA +
Sbjct: 669 RRMMEMAILRKADVICATCVGAGDPRLSQFR--FPHILIDESTQASEPECLIPLMMGAKQ 726
Query: 995 CVLGG 999
+L G
Sbjct: 727 VILVG 731
Score = 77 (32.2 bits), Expect = 0.00015, Sum P(4) = 0.00015
Identities = 16/29 (55%), Positives = 20/29 (68%)
Query: 690 PFTLVQGPPGTGKTHTVWGMLNVIHLVQY 718
P +L+QGPPGTGKT V + HLV+Y
Sbjct: 552 PLSLIQGPPGTGKT--VISSFIIHHLVKY 578
Score = 59 (25.8 bits), Expect = 0.00015, Sum P(4) = 0.00015
Identities = 23/127 (18%), Positives = 54/127 (42%)
Query: 143 YASNLLNEQGKASQGQGVSEVVDTAT-GVDIKVPESSQDGSNSHGVLGSDQDPSDQKRNR 201
+ N +E +S + + +V++T G K + + +N + SD++ Q+ N
Sbjct: 15 HLDNKKSENNNSSNNE-LHKVINTINNGFQFKDDDDEDNENNLNNESSSDEENQQQQNNN 73
Query: 202 SRHSEANIKGEKSVDGQEEPCLLPKQREIKGTEASHTTKGANNLGKRKIDQQKEAMLGKK 261
+ +++ + + D +EE + G E+ + + + D+++E KK
Sbjct: 74 NNNNKNQFEDDDE-DQEEEEYISGDDLNNNGQESDDYEEEEEDDDE---DEEEEDEESKK 129
Query: 262 RNRQTVF 268
N + F
Sbjct: 130 LNYDSFF 136
Score = 57 (25.1 bits), Expect = 0.00015, Sum P(4) = 0.00015
Identities = 22/77 (28%), Positives = 37/77 (48%)
Query: 773 RMLVCAPSNAATDELLTRVLDRGF-IDGEMKVYRPDVARVGVDSQTRAAQAVSVERRTEQ 831
++LVC PSN A D+L ++ + G + R +VA V+ T Q +++ +
Sbjct: 584 KVLVCTPSNVAIDQLTGKLHEIGLKVVRLSSKLREEVASP-VEHLTLHKQVYKLDQMGDG 642
Query: 832 LLVKSRE--EVIGWMHN 846
L K R+ E G + N
Sbjct: 643 ELGKLRKLKEAFGSLSN 659
>SGD|S000004685 [details] [associations]
symbol:NAM7 "ATP-dependent RNA helicase of the SFI
superfamily" species:4932 "Saccharomyces cerevisiae" [GO:0005737
"cytoplasm" evidence=IEA;IDA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0000956 "nuclear-transcribed mRNA catabolic process"
evidence=IMP] [GO:0070478 "nuclear-transcribed mRNA catabolic
process, 3'-5' exonucleolytic nonsense-mediated decay"
evidence=IGI;IMP] [GO:0008298 "intracellular mRNA localization"
evidence=IMP] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=TAS] [GO:0016567 "protein ubiquitination"
evidence=IMP;IDA;IPI] [GO:0005739 "mitochondrion" evidence=IDA]
[GO:0005844 "polysome" evidence=TAS] [GO:0003676 "nucleic acid
binding" evidence=TAS] [GO:0000184 "nuclear-transcribed mRNA
catabolic process, nonsense-mediated decay" evidence=IEA;TAS]
[GO:0006449 "regulation of translational termination" evidence=TAS]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0030466 "chromatin
silencing at silent mating-type cassette" evidence=IGI] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0046872 "metal
ion binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0006452 "translational frameshifting" evidence=IMP] [GO:0008186
"RNA-dependent ATPase activity" evidence=TAS] InterPro:IPR003593
InterPro:IPR018999 Pfam:PF09416 SMART:SM00382 SGD:S000004685
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 GO:GO:0003676 GO:GO:0016567
GO:GO:0030466 EMBL:BK006946 EMBL:Z49259 GO:GO:0005844 GO:GO:0008298
eggNOG:COG1112 InterPro:IPR014001 SMART:SM00487 GO:GO:0004004
GO:GO:0070478 GO:GO:0006449 GeneTree:ENSGT00550000074391
EMBL:X62394 EMBL:M76659 PIR:S23408 RefSeq:NP_013797.1 PDB:2XZL
PDBsum:2XZL ProteinModelPortal:P30771 SMR:P30771 DIP:DIP-2373N
IntAct:P30771 MINT:MINT-492322 STRING:P30771 PaxDb:P30771
PeptideAtlas:P30771 EnsemblFungi:YMR080C GeneID:855104
KEGG:sce:YMR080C CYGD:YMR080c HOGENOM:HOG000205990 KO:K14326
OMA:MFYEGSL OrthoDB:EOG405W86 EvolutionaryTrace:P30771
NextBio:978431 Genevestigator:P30771 GermOnline:YMR080C
Uniprot:P30771
Length = 971
Score = 90 (36.7 bits), Expect = 0.00017, Sum P(5) = 0.00017
Identities = 25/61 (40%), Positives = 34/61 (55%)
Query: 939 EASFANEAEIVFTTVSSSGRKLFSRLTHGFDMVVIDEAAQASEVGVLPPLSLGAARCVLG 998
EA N+A++V T +G K RL F V+IDE+ QASE L P+ GA + +L
Sbjct: 540 EAEILNKADVVCCTCVGAGDK---RLDTKFRTVLIDESTQASEPECLIPIVKGAKQVILV 596
Query: 999 G 999
G
Sbjct: 597 G 597
Score = 72 (30.4 bits), Expect = 0.00017, Sum P(5) = 0.00017
Identities = 14/25 (56%), Positives = 17/25 (68%)
Query: 771 KPRMLVCAPSNAATDELLTRVLDRG 795
K R+LVCAPSN A D L ++ D G
Sbjct: 452 KDRILVCAPSNVAVDHLAAKLRDLG 476
Score = 69 (29.3 bits), Expect = 0.00017, Sum P(5) = 0.00017
Identities = 12/16 (75%), Positives = 14/16 (87%)
Query: 690 PFTLVQGPPGTGKTHT 705
P +L+QGPPGTGKT T
Sbjct: 424 PLSLIQGPPGTGKTVT 439
Score = 43 (20.2 bits), Expect = 0.00017, Sum P(5) = 0.00017
Identities = 12/32 (37%), Positives = 17/32 (53%)
Query: 425 DASEESELQCVPG---RFESVEEYVRVFEPLL 453
DA EE E +P R++ EY R + PL+
Sbjct: 217 DAPEEQE--AIPPLLLRYQDAYEYQRSYGPLI 246
Score = 37 (18.1 bits), Expect = 0.00017, Sum P(5) = 0.00017
Identities = 10/38 (26%), Positives = 14/38 (36%)
Query: 181 GSNSHGVLGSDQDPSDQKRNRSRHSEANIKGEKSVDGQ 218
GS SH PSD + + + + VD Q
Sbjct: 3 GSGSHTPYDISNSPSDVNVQPATQLNSTLVEDDDVDNQ 40
>CGD|CAL0003335 [details] [associations]
symbol:SEN1 species:5476 "Candida albicans" [GO:0035649 "Nrd1
complex" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0019904 "protein domain specific binding" evidence=IEA]
[GO:0016180 "snRNA processing" evidence=IEA] [GO:0031126 "snoRNA
3'-end processing" evidence=IEA] [GO:0006369 "termination of RNA
polymerase II transcription" evidence=IEA] [GO:0006378 "mRNA
polyadenylation" evidence=IEA] [GO:0006364 "rRNA processing"
evidence=IEA] [GO:0008033 "tRNA processing" evidence=IEA]
InterPro:IPR014016 InterPro:IPR024714 PROSITE:PS51198
CGD:CAL0003335 GO:GO:0005524 GO:GO:0005634 GO:GO:0008033
GO:GO:0004386 eggNOG:COG1112 EMBL:AACQ01000003 EMBL:AACQ01000004
GO:GO:0006364 GO:GO:0006369 GO:GO:0043144 GO:GO:0016180 KO:K10706
InterPro:IPR024481 PANTHER:PTHR10887:SF164 Pfam:PF12726
RefSeq:XP_723003.1 RefSeq:XP_723150.1 ProteinModelPortal:Q5ANG6
STRING:Q5ANG6 GeneID:3635255 GeneID:3635333 KEGG:cal:CaO19.13359
KEGG:cal:CaO19.5938 Uniprot:Q5ANG6
Length = 2018
Score = 134 (52.2 bits), Expect = 0.00032, Sum P(3) = 0.00032
Identities = 59/239 (24%), Positives = 108/239 (45%)
Query: 784 TDELLTRVLDRGFIDGEMKVYRP-DVARVGVDSQTRAAQAVSVERRTEQLLVKSREEVIG 842
+ E +V+D I G P D A++ + + + AA V R + + S E +
Sbjct: 1338 SQEKNNKVID---ISGSGSSPTPSDKAKILICAPSNAAVDELVLRLRDGVRNSSGEHMPL 1394
Query: 843 WMHNLKGREAVLSQQIANLQRELNAAAFAVRSQGSVGVDPDVLMARDQ---NRDTLLQNL 899
+ L GR ++ + +L E Q V +DP++ + + RD L + L
Sbjct: 1395 KVVRL-GRSDAINSSVRDLTLEELVDKELQTKQTEVVIDPNIRLEHTKCINERDELRKRL 1453
Query: 900 AA-AVENRD------KV-LVEMSRFHIL----EGRFRPG-SNFNLEEARASLEASFANEA 946
A ++E ++ K+ + R + E R + +N E R +++A +EA
Sbjct: 1454 ATESLEEKEITELEEKIRAINKKRSELAKKLDEQREKASIANRTKEINRRNIQARILSEA 1513
Query: 947 EIVFTTVSSSGRKLFSRLTHGFDMVVIDEAAQASEVGVLPPLSLGAARCVLGGGSSAAP 1005
+++ +T+S S L + L+ FD V+IDEA Q E+ + PL G +C++ G + P
Sbjct: 1514 QVLCSTLSGSAHDLVANLSVQFDQVIIDEACQCLELSAIIPLRYGCKKCIMVGDPNQLP 1572
Score = 63 (27.2 bits), Expect = 0.00032, Sum P(3) = 0.00032
Identities = 12/34 (35%), Positives = 22/34 (64%)
Query: 424 YDASEESELQCVPGRFESVEEYVRVFEPLLFEEC 457
+ + ++S Q + ++ V++YV+V EPLL EC
Sbjct: 1093 FPSKDKSIYQEIKDTYKDVKDYVQVTEPLLMLEC 1126
Score = 38 (18.4 bits), Expect = 0.00032, Sum P(3) = 0.00032
Identities = 12/38 (31%), Positives = 17/38 (44%)
Query: 39 PHTSELFVASAAPQGIINNNAFSHAPSVSGFQPFNRAK 76
P S L A P G + + APSV+ +P + K
Sbjct: 965 PPKSHLNPAPPRPAGFNSKKSPPPAPSVAIGRPLHAVK 1002
>FB|FBgn0035842 [details] [associations]
symbol:CG7504 species:7227 "Drosophila melanogaster"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0005875 "microtubule associated complex" evidence=IDA]
InterPro:IPR000253 InterPro:IPR008984 Pfam:PF00498 PROSITE:PS50006
SMART:SM00240 GO:GO:0005875 EMBL:AE014296 GO:GO:0006200
GO:GO:0016887 Gene3D:2.60.200.20 SUPFAM:SSF49879 eggNOG:COG1112
KO:K10706 GeneTree:ENSGT00580000081652 RefSeq:NP_001137907.1
UniGene:Dm.31993 ProteinModelPortal:B7Z0D7 SMR:B7Z0D7 STRING:B7Z0D7
PaxDb:B7Z0D7 EnsemblMetazoa:FBtr0273367 GeneID:38904
KEGG:dme:Dmel_CG7504 FlyBase:FBgn0035842 OMA:NRSKSCY
OrthoDB:EOG4DV42G GenomeRNAi:38904 NextBio:810939 Bgee:B7Z0D7
Uniprot:B7Z0D7
Length = 1676
Score = 78 (32.5 bits), Expect = 0.00039, Sum P(4) = 0.00039
Identities = 20/60 (33%), Positives = 29/60 (48%)
Query: 946 AEIVFTTVSSSGRKLFSRLTHGFDMVVIDEAAQASEVGVLPPLSLGAARCVLGGGSSAAP 1005
A I+ TT+SS + + FD+ ++DEA Q +E L P+ G VL G P
Sbjct: 1365 ANIICTTLSSCVK--LANYVDFFDICIVDEATQCTEPWTLLPMRFGLTHMVLVGDMQQLP 1422
Score = 75 (31.5 bits), Expect = 0.00039, Sum P(4) = 0.00039
Identities = 19/70 (27%), Positives = 37/70 (52%)
Query: 420 HGKIYDASEESELQCVPGRFESVEEYVRVFEPLLFEECRAQLYSTWEELTETGSRDTHVM 479
HG + +E+ L +P F+S + Y +F PL+ + +L ST E + +++T
Sbjct: 984 HGSVDAVAEQDVLMPIPPEFDSFKNYREIFVPLM----KLELLSTIERDYKINNKNTF-S 1038
Query: 480 VRIRNIERRE 489
V + N+E ++
Sbjct: 1039 VSLINVETQD 1048
Score = 64 (27.6 bits), Expect = 0.00039, Sum P(4) = 0.00039
Identities = 25/75 (33%), Positives = 38/75 (50%)
Query: 692 TLVQGPPGTGKTHTVWGMLNVIHLVQYQHYYNSLLKKLAPESYKQPNESNSDNVSMGSID 751
TL+QGPPGTGK+ VI + Q Y + K L + + + + + +G +
Sbjct: 1196 TLIQGPPGTGKSR-------VISELCLQTLYGNAAKTLDRKILICAHSNTAVDHIVGLLG 1248
Query: 752 EVLQ--NMDQ-NLLR 763
VL+ N DQ +LLR
Sbjct: 1249 SVLRVMNRDQFHLLR 1263
Score = 61 (26.5 bits), Expect = 0.00039, Sum P(4) = 0.00039
Identities = 30/125 (24%), Positives = 49/125 (39%)
Query: 211 GEKSVDGQEEPCL-------LPKQREIKGTEASHTTKGANNLGKRKIDQQKEAMLGKKRN 263
G K GQEE L LPK E+K HT++ N+ + +A+L
Sbjct: 156 GGKQDPGQEEEVLPSSSNLHLPKLTEVKQEIVKHTSEEIQNI----FGEPSDAILNSVLE 211
Query: 264 RQTVFLNLEDVKQAGSLKTSTPRRQNPPVVTRTVKEARTIPSPAERGGEKQSQAINKDQK 323
N K A + T + T + R+I S A++ + ++ D++
Sbjct: 212 LNPYLYNKLTNKTANNEITRKKIHDGDCIELDTDTDRRSI-SEAQKAEDPSAEREVDDEE 270
Query: 324 QYDVS 328
+YD S
Sbjct: 271 EYDES 275
>ZFIN|ZDB-GENE-031112-4 [details] [associations]
symbol:stm "starmaker" species:7955 "Danio rerio"
[GO:0009590 "detection of gravity" evidence=IMP] [GO:0043049 "otic
placode formation" evidence=IEP] [GO:0005576 "extracellular region"
evidence=IEA] ZFIN:ZDB-GENE-031112-4 GO:GO:0005576 eggNOG:NOG12793
GO:GO:0043049 GeneTree:ENSGT00550000074777 GO:GO:0009590
EMBL:AY372242 EMBL:CT574549 EMBL:BC129155 IPI:IPI00482673
RefSeq:NP_942112.2 UniGene:Dr.79127 Ensembl:ENSDART00000105174
GeneID:386700 KEGG:dre:386700 CTD:20882 HOVERGEN:HBG095247
OMA:RPGDHSQ NextBio:20813980 Bgee:A2VD23 Uniprot:A2VD23
Length = 613
Score = 125 (49.1 bits), Expect = 0.00045, P = 0.00045
Identities = 59/300 (19%), Positives = 114/300 (38%)
Query: 46 VASAAPQGIINNNAFSHAPSVSGFQPFNRAKAAQGHGVEVEPKKAEDQNRRVASSSSKPG 105
V+ +AP + NNN + S + + + G + + A + PG
Sbjct: 17 VSISAP--VSNNNGTDNDESAADQRHIFTVQFNVGTPAPADGDSVTTDGKDSAEKNEAPG 74
Query: 106 NGEDIKAASSSVPGSENAAADEREEGEWSDAEGSVDAYASNLLNEQGKASQGQ--GVSEV 163
+ D ++ PG+ + + G +D + + + + +G+ G +
Sbjct: 75 DSSD----TTEKPGTTDGKDSAEQHGVTTDGKDEAEQHGVTTDGQDSAEKRGEADGAPDK 130
Query: 164 VDTATGVDIKVPESSQDGSNSHGVLGSDQDPSDQKRNRSRHSEANIKGEKSVDGQEEPCL 223
DT G D +S Q+ SH G D D + K + H++ N G+ S D +E P
Sbjct: 131 PDTQNGTDDT--DSDQETDASHHKTG-DSDENKDKPSAEDHTDGNHAGKDSTDSKESPDT 187
Query: 224 LPKQREIKGTEASHTTKGANNLGKRKIDQQKEAMLGKKRNRQTVFLNLEDVKQAGSLKTS 283
K +G ++ G ++ K D + N+ + + +D S +
Sbjct: 188 TDKP---EGPDSDSAPDG-DSASAEKTDSDHSP--DEDANKSSTEADKDDTSDKDS--SQ 239
Query: 284 TPRRQNPPVVTRTVKEARTIPSPAERGGEKQSQAINKDQKQYDVSSCNEGGTSVEALEPK 343
T + + + K E+ EK S ++D+ Q + S ++ G++ EA E K
Sbjct: 240 TDEKHDSDASDKDEKHE----DKDEKSDEKDSSKDSEDKSQ-EKSDKSDDGSNSEADEQK 294
>SGD|S000002577 [details] [associations]
symbol:SEC7 "Guanine nucleotide exchange factor (GEF) for ADP
ribosylation factors" species:4932 "Saccharomyces cerevisiae"
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005794 "Golgi apparatus"
evidence=IEA] [GO:0000045 "autophagic vacuole assembly"
evidence=IMP] [GO:0016021 "integral to membrane" evidence=ISM]
[GO:0005086 "ARF guanyl-nucleotide exchange factor activity"
evidence=IEA;IDA] [GO:0032012 "regulation of ARF protein signal
transduction" evidence=IEA] [GO:0006810 "transport" evidence=IEA]
[GO:0015031 "protein transport" evidence=IEA] [GO:0005770 "late
endosome" evidence=IDA] [GO:0005829 "cytosol" evidence=IDA]
[GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IMP]
[GO:0006891 "intra-Golgi vesicle-mediated transport" evidence=IMP]
[GO:0005802 "trans-Golgi network" evidence=IDA] [GO:0005798
"Golgi-associated vesicle" evidence=IDA] InterPro:IPR000904
InterPro:IPR016024 Pfam:PF01369 PROSITE:PS50190 SMART:SM00222
SGD:S000002577 GO:GO:0016021 GO:GO:0005829 SUPFAM:SSF48371
GO:GO:0015031 GO:GO:0000045 EMBL:BK006938 GO:GO:0005770
GO:GO:0005798 GO:GO:0005802 GO:GO:0006888 GO:GO:0006891
eggNOG:COG5307 GO:GO:0005086 GO:GO:0032012 Gene3D:1.10.1000.11
InterPro:IPR015403 InterPro:IPR023394 Pfam:PF09324 SUPFAM:SSF48425
HOGENOM:HOG000181045 GeneTree:ENSGT00660000095162 OMA:KESIGET
EMBL:Z46727 EMBL:Z47813 KO:K00328 RefSeq:NP_010458.3 GeneID:851753
KEGG:sce:YDR173C OrthoDB:EOG43V33J EMBL:J03918 PIR:S49764
RefSeq:NP_010454.3 ProteinModelPortal:P11075 SMR:P11075
DIP:DIP-830N IntAct:P11075 MINT:MINT-616341 STRING:P11075
PaxDb:P11075 PeptideAtlas:P11075 PRIDE:P11075 EnsemblFungi:YDR170C
GeneID:851748 KEGG:sce:YDR170C CYGD:YDR170c NextBio:969499
Genevestigator:P11075 GermOnline:YDR170C Uniprot:P11075
Length = 2009
Score = 105 (42.0 bits), Expect = 0.00049, Sum P(2) = 0.00049
Identities = 51/252 (20%), Positives = 100/252 (39%)
Query: 36 SANPHTSELFVASAAPQGIINNNAFSHAPSVSGFQPFNRAKAAQGHGVEVEPKKAEDQNR 95
S+N T+ S PQ I A +G + K + G E K+ +
Sbjct: 18 SSNVETASSVNPSVKPQNAIKEEA----KETNGED--QKCKGPENAGSTAETKETSNDAT 71
Query: 96 RVASSSSKPGNGEDIKAASSSVPGSENAAADEREEGEWSDAEGS-VDAYASNLLNEQGKA 154
+ + + D + G E+ DE E+ + D + VD+ +S +E G+
Sbjct: 72 NGMKTPEETEDTNDKRHDDEGEDGDEDEDEDEDEDEDNGDEDDEDVDSSSSETSSEDGED 131
Query: 155 SQGQGVSEVVDTATGVDIKVPESSQDGSNSHGVLGSDQDPSDQKRNRSRHSEANIKGEKS 214
S+ E ++++G D + ES DG+ S+ G + +++ E GE +
Sbjct: 132 SESVS-GESTESSSGEDEESDES--DGNTSNSSSGDESGSEEEEEEEEEEEEEENAGEPA 188
Query: 215 VDGQEEPCLLPKQREIKGTEASHTTKGANNLGKRKIDQQKEAMLGKKRNRQTVFLNLEDV 274
+ Q+ +P + ++HT +L + +L K +T+ LN +D+
Sbjct: 189 IAHQDS---VPTN-DSTAPRSTHTRN--ISLSSNGSNTNSTIIL-VKTTLETI-LNDKDI 240
Query: 275 KQAGSLKTSTPR 286
K+ + + + R
Sbjct: 241 KKNSNAQKAIER 252
Score = 80 (33.2 bits), Expect = 0.00049, Sum P(2) = 0.00049
Identities = 34/148 (22%), Positives = 63/148 (42%)
Query: 283 STPRRQNPPVVTRTVKEARTIPSPAERGGEKQSQAINKDQKQYDVSSCNEGGTSVEALEP 342
S RR+N ++ TV+ A S + GG+ + +N K +++ N T + L P
Sbjct: 1730 SNDRRENDSNISETVERAHQEESSEDVGGD-MVETLNGQTK---LNNGNSVPTVKDELNP 1785
Query: 343 KPECNGDMNFGLPGSTDPKLGTKKHPPAKKQTATAN-LYQDTSVERLIREVTNEKFWHHP 401
KP + +P T + + +++ N + ++ L+ E+ NE F +
Sbjct: 1786 KPA-----SLSIPKKTKHMKRNESNEDIRRRINIKNSIVVKCVLQLLMIELLNELFENED 1840
Query: 402 VVHVPPIRTLLRIVTLKGHGKIYDASEE 429
H P + +RI L K Y+ S +
Sbjct: 1841 FAHCIPYKEAIRITRLLE--KSYEFSRD 1866
>UNIPROTKB|F1M3I2 [details] [associations]
symbol:RGD1562799 "Protein RGD1562799" species:10116
"Rattus norvegicus" [GO:0005200 "structural constituent of
cytoskeleton" evidence=IEA] InterPro:IPR026189 GO:GO:0005200
PANTHER:PTHR16742 IPI:IPI00951076 Ensembl:ENSRNOT00000066112
Uniprot:F1M3I2
Length = 554
Score = 123 (48.4 bits), Expect = 0.00064, P = 0.00064
Identities = 65/293 (22%), Positives = 117/293 (39%)
Query: 99 SSSSKPGNGEDIKAASSSVPGSENAA--ADEREEGEWSDAEGSVDAYASNLLNEQGKASQ 156
+ S KPG +DIK + G+++A+ +E+ G+ A + +E G
Sbjct: 186 TGSDKPGVKKDIKTSKKGTKGTDSASESGNEKASGKKEAKTSKKGPKAKDSASETGSEKA 245
Query: 157 GQGVSEVVDTATGVDIKVPESSQD-GSNSHGVLGSDQDPSDQKRNRSRHSEAN-----IK 210
G G E + G +K ES+ D GS G G + S +K +++ S ++
Sbjct: 246 G-GKKEAKSSKKG--LKAKESASDSGSEKAG--GKKEAKSSKKGLKAKESASDSGSEKAG 300
Query: 211 GEKSVDGQEEPCLLPKQREIKGTEASHTTKGA--NNLGKRKIDQQKEAMLGKKRNRQTVF 268
G+K V G ++ + G+E + KG + G + D E K ++
Sbjct: 301 GKKGVKGSKKGLKAKESASDSGSEKAGGKKGVKGSKKGSKAKDSASETGSEKAGGKKDAK 360
Query: 269 LNLEDVKQAGSLKTSTPRRQNPPVVTRTVKE-ARTIPSPAERGGEKQ--------SQAIN 319
+ + K S S + + K+ ++ S +E GGEK S+ ++
Sbjct: 361 ASKKVSKDKSSASESGGEKAGGKKEAKASKKVSKDKSSASESGGEKAGGKKEAKASKKVS 420
Query: 320 KDQKQYDVSSCNEGGTSVEALEPKPECNGDMNFGLPGSTDPKLGTKKHPPAKK 372
KD+ S + G EA K + +G+ + G + K G+K A +
Sbjct: 421 KDKASPSESEVAKAGGKKEA---KAKSDGEKSGGKKEARASKKGSKDKASASE 470
>ZFIN|ZDB-GENE-050522-205 [details] [associations]
symbol:nefma "neurofilament, medium polypeptide a"
species:7955 "Danio rerio" [GO:0005882 "intermediate filament"
evidence=IEA] [GO:0005198 "structural molecule activity"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR001664 InterPro:IPR002957 InterPro:IPR006821
Pfam:PF04732 PRINTS:PR01248 ZFIN:ZDB-GENE-050522-205 GO:GO:0005198
GO:GO:0005882 InterPro:IPR016044 InterPro:IPR018039
PANTHER:PTHR23239 Pfam:PF00038 PROSITE:PS00226
GeneTree:ENSGT00560000076873 InterPro:IPR011098 PROSITE:PS51109
EMBL:CU467622 IPI:IPI00831776 Ensembl:ENSDART00000080256
ArrayExpress:F1QCR7 Bgee:F1QCR7 Uniprot:F1QCR7
Length = 849
Score = 125 (49.1 bits), Expect = 0.00069, P = 0.00069
Identities = 74/315 (23%), Positives = 130/315 (41%)
Query: 67 SGFQPFN-RAKAAQGHGVEVEPKKAEDQNRRVASSSSKPGNGEDIKAASSSV---PGSEN 122
S F F R +G V+ EP K + Q++ V + ED K+ E
Sbjct: 393 SHFSTFPYRQTVTKGPKVKSEPPKLKVQHKFVEEIIEET-RVEDEKSEMDEALAEMAEEL 451
Query: 123 AAADEREEGEWSDAEGSVDAYASNLLNEQG-KASQGQGVSE--VVDTATGVDIKVP-ESS 178
+AA E EEG + EG + +E+G K +G+G E V T V P E
Sbjct: 452 SAAKEDEEG--GEEEGEAEEGEEGGDDEEGEKEDEGEGEEEEVVASTQAKVASAAPAEEE 509
Query: 179 QDGSNSHGVLGSDQDPSDQKRNRSRHSEANIKGEKSVDGQEEPCLLPKQREIKGTEASHT 238
++G G D++ +++ + E KGE+ +G+EE + E + ++A
Sbjct: 510 EEGEKE----GGDEE-QEEEEEAGKGDEEEEKGEEE-EGEEEKKEEEAEEEAEESKAPEA 563
Query: 239 TKGANNLGKRKIDQQKEAMLGKKRNRQTVFLNLEDVKQAGSLKTSTPRRQNPPVVTRTVK 298
K + K ++K+A G++ + N E AGS K ST ++ V K
Sbjct: 564 -KASPESEKA---EEKQASGGEEEAEEEGDENQEG--DAGSDKGSTDEKEVE--VKEQPK 615
Query: 299 EARTIPSPAERGGEKQSQAINKDQKQYDVSSCNEGGTSVEALEPK-PECNGDMNFGLPGS 357
+A + ++ G+++ + ++++ V+ E+ + + P+ + P S
Sbjct: 616 KAEPEAAKEDKKGKEEKEEAKSEKEKATVTETKAESPKAESPKAESPKAESPKSES-PKS 674
Query: 358 TDPKLGTKKHPPAKK 372
PK T K KK
Sbjct: 675 ESPKKETPKTEAPKK 689
>SGD|S000000978 [details] [associations]
symbol:ECM32 "DNA dependent ATPase/DNA helicase" species:4932
"Saccharomyces cerevisiae" [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0003678
"DNA helicase activity" evidence=IDA] [GO:0003724 "RNA helicase
activity" evidence=ISS] [GO:0006449 "regulation of translational
termination" evidence=IMP] [GO:0005844 "polysome" evidence=IDA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] SGD:S000000978 GO:GO:0005524 GO:GO:0005737
GO:GO:0003677 GO:GO:0003723 EMBL:BK006939 GO:GO:0005844
eggNOG:COG1112 GeneTree:ENSGT00700000104467 InterPro:IPR014001
SMART:SM00487 GO:GO:0003678 EMBL:U18922 GO:GO:0003724 PIR:S30862
RefSeq:NP_011103.1 ProteinModelPortal:P32644 SMR:P32644
DIP:DIP-5404N IntAct:P32644 MINT:MINT-499764 STRING:P32644
PaxDb:P32644 PeptideAtlas:P32644 EnsemblFungi:YER176W GeneID:856923
KEGG:sce:YER176W CYGD:YER176w HOGENOM:HOG000094475 OMA:KDTPRGT
OrthoDB:EOG4P8JS8 NextBio:983389 Genevestigator:P32644
GermOnline:YER176W GO:GO:0006449 Uniprot:P32644
Length = 1121
Score = 88 (36.0 bits), Expect = 0.00070, Sum P(3) = 0.00070
Identities = 20/52 (38%), Positives = 35/52 (67%)
Query: 944 NEAEIVFTT-VSSSGRKLFSRLTHGFDMVVIDEAAQASEVGVLPPLSLGAAR 994
++++I+FTT +++ GR+L ++ +V++DEA Q+SE L PLSL R
Sbjct: 791 SQSQIIFTTNIAAGGREL--KVIKECPVVIMDEATQSSEASTLVPLSLPGIR 840
Score = 69 (29.3 bits), Expect = 0.00070, Sum P(3) = 0.00070
Identities = 13/31 (41%), Positives = 22/31 (70%)
Query: 692 TLVQGPPGTGKTHTVWGMLNVIHLVQYQHYY 722
T++QGPPGTGKT T+ + +I +++ H +
Sbjct: 666 TILQGPPGTGKTSTIEEI--IIQVIERFHAF 694
Score = 68 (29.0 bits), Expect = 0.00070, Sum P(3) = 0.00070
Identities = 37/163 (22%), Positives = 61/163 (37%)
Query: 210 KGEKSVDGQEEPCLLPKQREI-KGTEASHTTKGANNLGKRKIDQQKEAMLGKKRNRQTVF 268
K KS + P P R KG +A+H N +GK K ++K + RN Q +
Sbjct: 234 KVSKSETSRSNPG--PSNRNKGKGNKANHKKNSGNGIGKEK--ERKTNIRNNVRNSQPI- 288
Query: 269 LNLEDVKQAGSLKTSTP--RRQNPPVVTRTVKEARTIPSPAERGGEKQSQAINKDQKQY- 325
ED K S T+ + +N V + + + + G + + K +K +
Sbjct: 289 --PEDRKNTNSHVTTNSGGKGKNESVDKHQLPQPKALNGNGS--GSTNTTGLKKGKKDHA 344
Query: 326 -DVSSCNEGGTSVEALEPKPECNGDMN-FGLPGSTDPKLGTKK 366
+ N+ + E K G N G + P GT +
Sbjct: 345 GQKTKGNDKTGNKNPREAKLNSAGRKNALGKKSNNQPNKGTSR 387
>MGI|MGI:97314 [details] [associations]
symbol:Nefm "neurofilament, medium polypeptide" species:10090
"Mus musculus" [GO:0000226 "microtubule cytoskeleton organization"
evidence=IGI] [GO:0005198 "structural molecule activity"
evidence=IEA] [GO:0005856 "cytoskeleton" evidence=ISO] [GO:0005882
"intermediate filament" evidence=IEA] [GO:0005883 "neurofilament"
evidence=IDA] [GO:0008088 "axon cargo transport" evidence=IMP]
[GO:0030424 "axon" evidence=ISO;IDA] [GO:0031133 "regulation of
axon diameter" evidence=IMP] [GO:0031594 "neuromuscular junction"
evidence=IDA] [GO:0043005 "neuron projection" evidence=IDA]
[GO:0045104 "intermediate filament cytoskeleton organization"
evidence=IMP] [GO:0045110 "intermediate filament bundle assembly"
evidence=IGI] [GO:0060052 "neurofilament cytoskeleton organization"
evidence=IGI;IMP] InterPro:IPR001664 InterPro:IPR002957
InterPro:IPR006821 Pfam:PF04732 PRINTS:PR01248 MGI:MGI:97314
GO:GO:0000226 GO:GO:0005198 GO:GO:0031594 GO:GO:0008088
HOVERGEN:HBG013015 GO:GO:0005883 GO:GO:0060052 InterPro:IPR016044
InterPro:IPR018039 PANTHER:PTHR23239 Pfam:PF00038 PROSITE:PS00226
GO:GO:0031133 GeneTree:ENSGT00560000076873 GO:GO:0045110
OrthoDB:EOG4VMFFD CTD:4741 eggNOG:NOG151229 KO:K04573 EMBL:X05640
EMBL:DQ201636 EMBL:AK051696 EMBL:AK164318 EMBL:AK165041
EMBL:BC119602 EMBL:BC128564 EMBL:M20481 IPI:IPI00323800 PIR:B43772
PIR:S00030 RefSeq:NP_032717.2 UniGene:Mm.390700
ProteinModelPortal:P08553 SMR:P08553 IntAct:P08553 STRING:P08553
PhosphoSite:P08553 UCD-2DPAGE:P08553 PaxDb:P08553 PRIDE:P08553
DNASU:18040 Ensembl:ENSMUST00000022638 GeneID:18040 KEGG:mmu:18040
UCSC:uc007ulo.1 InParanoid:P08553 NextBio:293149 Bgee:P08553
CleanEx:MM_NEFM Genevestigator:P08553 GermOnline:ENSMUSG00000022054
Uniprot:P08553
Length = 848
Score = 124 (48.7 bits), Expect = 0.00088, P = 0.00088
Identities = 68/331 (20%), Positives = 135/331 (40%)
Query: 53 GIINNNAFSHA-PSVSGFQPFNRAKAAQGHGVEVEPKKAEDQNRRVASSSSKPGNGEDIK 111
G I ++H PSV+ + K + ++V+ K E+ K E +
Sbjct: 415 GSITGPLYTHRQPSVTISSKIQKTKV-EAPKLKVQHKFVEEIIEETKVEDEKSEMEETLT 473
Query: 112 AASSSVPGSENAAADEREEGEWS-DAEGS-VDAYASNLLNEQG-KASQGQGVSEVVDTAT 168
A + + S +E EE E +AE S V + + E+G K + +G E +
Sbjct: 474 AIAEELAASAKEEKEEAEEKEEEPEAEKSPVKSPEAKEEEEEGEKEEEEEGQEEEEEEDE 533
Query: 169 GVDIKVPESSQDGSNSHGVLGSDQDPSDQKRNRSRHS----EANIKGEKSVDGQEEPCLL 224
GV K ++ + GS G D+ +++ + EA K EK ++G+ E +
Sbjct: 534 GV--KSDQAEEGGSEKEGSSEKDEGEQEEEEGETEAEGEGEEAEAKEEKKIEGKVEEVAV 591
Query: 225 PKQREIKGTEASHTTKGANNLGKRKIDQQKEAMLGKKRNRQTVFLNLEDV-KQAGSLKTS 283
++ +++ E + + + + + K + +A G+++ + V ++V K++ +
Sbjct: 592 KEEIKVEKPEKAKSPMPKSPVEEVKPKPEAKAGKGEQKEEEKVEEEKKEVTKESPKEEKV 651
Query: 284 TPRRQNP-----------PVVTRTVKEARTIPSPAERGGEKQSQAINKDQKQYDVSSC-- 330
+ + P PV + V+E TI + EK ++ K Q Q V
Sbjct: 652 EKKEEKPKDVADKKKAESPVKEKAVEEVITISKSVKVSLEKDTKE-EKPQPQEKVKEKAE 710
Query: 331 NEGGTSVEALEPKPECNGDMNFGLPGSTDPK 361
EGG+ E + P+ + + + G + K
Sbjct: 711 EEGGSEEEGSDRSPQESKKEDIAINGEVEGK 741
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.313 0.130 0.375 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 1019 980 0.00098 122 3 11 23 0.45 34
38 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 31
No. of states in DFA: 626 (67 KB)
Total size of DFA: 444 KB (2211 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 103.00u 0.09s 103.09t Elapsed: 00:00:04
Total cpu time: 103.01u 0.09s 103.10t Elapsed: 00:00:04
Start: Sat May 11 04:38:44 2013 End: Sat May 11 04:38:48 2013