BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042849
(1019 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q92355|SEN1_SCHPO Helicase sen1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=sen1 PE=1 SV=1
Length = 1687
Score = 106 bits (265), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 116/430 (26%), Positives = 193/430 (44%), Gaps = 93/430 (21%)
Query: 585 ILRKLQPK-GIWYLTVLGSLATTQREYVALHAFCRLNSQMQTAILKPSPEHFPKYEHQTP 643
IL KLQ +W+L L +LAT R+Y + + + I++ P P +H +
Sbjct: 1064 ILNKLQGNCALWFLK-LTNLATFTRQYAGIRGLPYFH--LADDIIRARPCSQP-VKHSSS 1119
Query: 644 TMPECFTQNFIDHLHRTFNGPQLAAIQWAAIHTAAGTSSGMTKSPWPFTLVQGPPGTGKT 703
+ + + N PQ AI A ++G FTL+QGPPGTGKT
Sbjct: 1120 EIKAAMKRYQV-------NEPQAKAIM------CALDNNG-------FTLIQGPPGTGKT 1159
Query: 704 HTVWGMLNVIHLVQYQHYYNSLLKKLAPESYKQPNESNSDNVSMGSIDEVLQNMDQNLLR 763
T+ G+++ +LL L+ +PN+ + S
Sbjct: 1160 KTIIGIIS------------ALLVDLSRYHITRPNQQSKSTES----------------- 1190
Query: 764 TLPKLCPKPRMLVCAPSNAATDELLTRVLDRGFIDGEMKVYRPDVARVGV-DSQTRAAQA 822
K ++L+CAPSNAA DE+L R L RGF+ + Y P V R+G ++ + +
Sbjct: 1191 -------KQQILLCAPSNAAVDEVLLR-LKRGFLLENGEKYIPRVVRIGNPETINVSVRD 1242
Query: 823 VSVERRTEQLLVKSREEVI--GWMHNL-KGREAVLS--QQIANLQRELNAAAFAVRSQGS 877
+S+E +TE+ L++ + I G + L + R+ Q+I L+++++
Sbjct: 1243 LSLEYQTEKQLLEVNQGAIDLGSLQELTRWRDTFYDCIQKIEELEKQID----------- 1291
Query: 878 VGVDPDVLMARDQNRDTLLQNLAAAVENR--DKVLVEMSRFHILEGRFRPGSNFNLEEAR 935
+ARD DT ++L ++N+ +K L E + F +L +
Sbjct: 1292 --------VARDVAEDT--KSLGKELQNKINEKNLAEQKVEELQSQSFTKNKEVDLLRKK 1341
Query: 936 ASLEASFANEAEIVFTTVSSSGRKLFSRLTHGFDMVVIDEAAQASEVGVLPPLSLGAARC 995
A + + +A++V T+S SG L + + F V+IDEAAQA E+ + PL GA +C
Sbjct: 1342 A--QKAILKQADVVCATLSGSGHDLVAHSSLNFSTVIIDEAAQAVELDTIIPLRYGAKKC 1399
Query: 996 VLGGGSSAAP 1005
+L G + P
Sbjct: 1400 ILVGDPNQLP 1409
>sp|O94387|YGSA_SCHPO Uncharacterized ATP-dependent helicase C29A10.10c
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPBC29A10.10c PE=3 SV=1
Length = 1944
Score = 105 bits (262), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 141/585 (24%), Positives = 232/585 (39%), Gaps = 129/585 (22%)
Query: 431 ELQCVPGRFESVEE--YVRVFEPLLFEECRAQLYSTWEELTETGSRDTHVMVRIRNIERR 488
E+QCV +F + Y +VF+P+LF EC AQ+ S EE + + I N
Sbjct: 1082 EMQCVQAKFTYNDSNAYEKVFKPMLFHECWAQVKSAVEE------KQYPPIDLILNTRST 1135
Query: 489 ERGWYDVIVLPVNECKWSF-KEGDVAVLSTPRP-GSVRGKRNHSLAAEDDEEAEVSGRVA 546
+ D+ + + SF + D+ +LS + G ++ L ++
Sbjct: 1136 VDNFVDIYFTSCSPTEVSFLSDTDICLLSKSQSSGDTNNPKSFQLC-----------KIQ 1184
Query: 547 GTVRRHFPVDARDPPGAILHFYVGDSYDPSSSMDDDDHILRKLQPKGIWYLTVLGSLATT 606
R+ +S + M+ + L++ P + L + T+
Sbjct: 1185 SISRK------------------KESLELCLRMNIESIDLQEYAPNIRFTAQKLFNATTS 1226
Query: 607 QREYVALHAFCRLNSQMQTAILKPSPEHFPKYEHQTPTMPECFTQNFIDHLHRTF--NGP 664
RE+ AL + L+ P + +P FT + + +++ N P
Sbjct: 1227 LREFAALKS------------LRHLPLSQRILDANVTRLPSNFTDDKKQKIMKSYGVNEP 1274
Query: 665 QLAAIQWAAIHTAAGTSSGMTKSPWPFTLVQGPPGTGKTHTVWGMLNVIHLVQYQHYYNS 724
Q AI A+ + G FTL+QGPPGTGKT T+ GM
Sbjct: 1275 QAYAIY------ASSVNDG-------FTLIQGPPGTGKTKTILGM--------------- 1306
Query: 725 LLKKLAPESYKQPNESNSDNVSMGSIDEVLQNMDQNLLRTLP---KLCPKPRMLVCAPSN 781
I VL + Q L +P + K ++L+CAPSN
Sbjct: 1307 -------------------------IGAVLTSSSQGLQFNVPGQTRKTSKNKILICAPSN 1341
Query: 782 AATDELLTRVLDRGFIDGEMKVYRPDVARVGV-DSQTRAAQAVSVERRTEQLLVKSREEV 840
AA DE+L R+ G D E + P V RVG DS + A+ ++E + ++K E
Sbjct: 1342 AAIDEILLRI-KAGVYDHEGIKFFPKVIRVGFGDSISVHAKEFTLEEQ----MIKQME-- 1394
Query: 841 IGWMHNLKGREAVLSQQIANLQRELNAAAFAVRSQGSVGVDPDVLMARDQNRDTLLQNLA 900
+ NLK Q+ N ++ + S+ D + + +N L L
Sbjct: 1395 ---LTNLKK-----DQEANNSSDTRKKYDSIIKKRDSLREDLEKFRSTGKNSSILEAQLR 1446
Query: 901 AAVENRDKVLVEMSRFHILEGRFRPGSNFNLEEARASLEASFANEAEIVFTTVSSSGRKL 960
+ ++ ++E S + E + +N NL+ + ++ EA+IV T+S+SG +L
Sbjct: 1447 EITKQKN--MLEQSLDDMRERQ--RSTNRNLDVLKKQIQNQLLQEADIVCATLSASGHEL 1502
Query: 961 FSRLTHGFDMVVIDEAAQASEVGVLPPLSLGAARCVLGGGSSAAP 1005
F V+IDEAAQA E+ + PL G CV+ G + P
Sbjct: 1503 LLNAGLTFRTVIIDEAAQAVELSSIIPLKYGCESCVMVGDPNQLP 1547
>sp|Q00416|SEN1_YEAST Helicase SEN1 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=SEN1 PE=1 SV=2
Length = 2231
Score = 93.2 bits (230), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 83/321 (25%), Positives = 140/321 (43%), Gaps = 57/321 (17%)
Query: 691 FTLVQGPPGTGKTHTVWGMLNVIHLVQYQHYYNSLLKKLAPESYKQPNESNSDNVSMGSI 750
F+L+QGPPGTGKT T+ G++ Y+ S + K P E NS N
Sbjct: 1352 FSLIQGPPGTGKTKTILGIIG---------YFLSTKNASSSNVIKVPLEKNSSNTE---- 1398
Query: 751 DEVLQNMDQNLLRTLPKLCPKPRMLVCAPSNAATDELLTRVLDRGFIDGEMKVYRPDVAR 810
+L K ++L+CAPSNAA DE+ R L G D + ++P + R
Sbjct: 1399 ----------------QLLKKQKILICAPSNAAVDEICLR-LKSGVYDKQGHQFKPQLVR 1441
Query: 811 VG-VDSQTRAAQAVSVERRTEQLLVKSREEVIGWMHNLKGREAVLSQQIANLQRELNAAA 869
VG D A + +++E ++ + + E+ + L+R+ N A
Sbjct: 1442 VGRSDVVNVAIKDLTLEELVDKRIGERNYEI---------------RTDPELERKFNNAV 1486
Query: 870 FAVR----SQGSVGVDPDVLMARDQNRDTLLQNLAAAVENRDKVLVEMSRFHILEGRFRP 925
R S +P+ M+ + + L + K++ E+ R E R +
Sbjct: 1487 TKRRELRGKLDSESGNPESPMSTED-----ISKLQLKIRELSKIINELGRDRD-EMREKN 1540
Query: 926 GSNF-NLEEARASLEASFANEAEIVFTTVSSSGRKLFSRLTHGFDMVVIDEAAQASEVGV 984
N+ N + R + +A ++I+ +T+S S + + + FD V+IDEA Q +E+
Sbjct: 1541 SVNYRNRDLDRRNAQAHILAVSDIICSTLSGSAHDVLATMGIKFDTVIIDEACQCTELSS 1600
Query: 985 LPPLSLGAARCVLGGGSSAAP 1005
+ PL G RC++ G + P
Sbjct: 1601 IIPLRYGGKRCIMVGDPNQLP 1621
>sp|Q86AS0|Y4399_DICDI Probable helicase DDB_G0274399 OS=Dictyostelium discoideum
GN=DDB_G0274399 PE=3 SV=1
Length = 967
Score = 78.6 bits (192), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 73/280 (26%), Positives = 126/280 (45%), Gaps = 65/280 (23%)
Query: 595 WYLTVLGSLATTQREYVALHAFCRLNSQMQTAILKPSPEHFPKYEHQTPTMPECFTQNFI 654
W+ T L +L+T QRE+ AL+ C ++ M+T +++ P + + F+
Sbjct: 278 WWTTKLCNLSTLQREFAALYQ-CSQSNFMKTLMMRDDDGEDGIVMKIPPLLHDQFSS--- 333
Query: 655 DHLHRTFNGPQLAAIQWAAIHTAAGTSSGMTKSPWPFTLVQGPPGTGKTHTVWGMLNVI- 713
T+N QL A+ A A TL+QGPPGTGKTH + G+++V+
Sbjct: 334 -----TYNDSQLNALTSALEGNA-------------ITLIQGPPGTGKTHVILGLISVLL 375
Query: 714 -----------------HLVQYQHYYNSLLKKLAPESYKQPNESNS-----DNVSMGSID 751
HL++ + S+ +K + QP + DN + ID
Sbjct: 376 HSTIVPKVKSGGNNLGDHLLKDREL--SMAEKRDLWNISQPWFNKEFPHIRDNYEL--ID 431
Query: 752 EVLQNMDQNLLRTLPKLC----------PKPRMLVCAPSNAATDELLTRVLDRGFIDGEM 801
+ DQ R L + K R+L+CAPSN A DE+++R++ G ++ +
Sbjct: 432 YDFEERDQKRKRDLWRKLRDTGSVKGGSTKRRILLCAPSNGAVDEIVSRLIRDGLLNADG 491
Query: 802 KVYRPDVARVGVDSQTRAAQAVSVERRTEQLLVKSREEVI 841
+ Y P++ RVG S + VE + +V+ R++++
Sbjct: 492 RKYNPNLVRVGPGSHS------DVESVSLDYMVRCRQQLM 525
Score = 61.2 bits (147), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 42/71 (59%)
Query: 936 ASLEASFANEAEIVFTTVSSSGRKLFSRLTHGFDMVVIDEAAQASEVGVLPPLSLGAARC 995
+S+ +EA+IV TT+S SG L +++ GFD+V+IDEAAQA E L P+ G +
Sbjct: 553 SSIRTLVLDEADIVATTLSFSGASLLTKMAGGFDIVIIDEAAQAVETSTLIPIQHGCKKV 612
Query: 996 VLGGGSSAAPC 1006
VL G P
Sbjct: 613 VLVGDPKQLPA 623
Score = 53.5 bits (127), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 38/113 (33%), Positives = 56/113 (49%), Gaps = 11/113 (9%)
Query: 420 HGKIYDASE----ESELQCVPGRFESVEEYVRVFEPLLFEECRAQLYSTWEELTETGSRD 475
H +DAS+ E EL+ V F + E+Y+ +EPLLFEECRAQL + EE G +D
Sbjct: 47 HILTWDASDLSPKEKELKPVKVSFNNEEDYITTYEPLLFEECRAQLERSIEE----GEKD 102
Query: 476 TH---VMVRIRNIERRERGWYDVIVLPVNECKWSFKEGDVAVLSTPRPGSVRG 525
+ R+R I +V+ N + F + D+ ++S P V G
Sbjct: 103 DTSEPTLSRVRYISEVNDFLVVGLVMAENVNIFQFHDNDLIMISLHHPLIVFG 155
>sp|A2AKX3|SETX_MOUSE Probable helicase senataxin OS=Mus musculus GN=Setx PE=2 SV=1
Length = 2646
Score = 76.6 bits (187), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 137/602 (22%), Positives = 228/602 (37%), Gaps = 158/602 (26%)
Query: 435 VPGRFESVEEYVRVFEPLLFEECRAQLYSTWEELTETGSRDTHVMVRIRNIERRERGWYD 494
VP RF+ EY VF PL+ + W + +++ +++R + +++
Sbjct: 1714 VPVRFQDCAEYFNVFLPLIILNAFETVAQEW---LSSPNKENFYQLQLRKFPADYKKYWE 1770
Query: 495 VIVLPVNECKWSF----KEGDVAVLSTPRPGSVRGKRNHSLAAEDDEEAEVSGRVAGTVR 550
++ +NE + + KE D+ L+ + R H + + S G V
Sbjct: 1771 FLIY-LNESELAKQLHPKENDLVFLAPEKSYMDR----HGMQ-------DCSHYYCGYVH 1818
Query: 551 --RHFPVDARDPPGAILHFYVGDSYDPSSSMDDDDHILRKLQPKGIWYLTVLGSLATTQR 608
R V L D+ P+S K + V+ SL TTQR
Sbjct: 1819 KFRRTSVMRSGKAECSLCIQTQDTL-PASV-------------KNLTRCIVISSLVTTQR 1864
Query: 609 EYVALHAFCRLNSQMQTAILKPSPEHFPKYEHQTPTMPECFTQNFIDHLHRTFNGPQLAA 668
+ A+ N Q+ A+L P+P F + T T ++ + +L + FN Q A
Sbjct: 1865 KLKAMSLLSSRN-QLARAVLNPNPMDFCTKDLLTTT-----SERIVAYL-KDFNEDQKKA 1917
Query: 669 IQWAAIHTAAGTSSGMTKSPWPFTLVQGPPGTGKTHTVWGMLNVIHLVQYQHYYNSLLKK 728
I+ A + S + K L+ GPPGTGK+ T+ G+L Y L
Sbjct: 1918 IETA--YAMVKHSPSVAK----ICLIHGPPGTGKSKTIVGLL-----------YRLL--- 1957
Query: 729 LAPESYKQPNESNSDNVSMGSIDEVLQ-NMDQNLLRTLPKLCPKPRMLVCAPSNAATDEL 787
++N G DE + QN R+LVCAPSNAA DEL
Sbjct: 1958 -------------TENQRKGHSDENFNAKIKQN------------RVLVCAPSNAAVDEL 1992
Query: 788 LTRVL---------------DRGFID----GEMKVYRPDVARVGVDSQTRAAQAVSVERR 828
+ +++ + G I+ G K +V + +DSQ V R
Sbjct: 1993 MKKIILEFKEKCKDKKNPLGNCGDINLVRLGPEKSINTEVLKFSLDSQ--------VNHR 2044
Query: 829 TEQLLVKSREEVIGWMHNLKGREAVLSQQIANLQRELNAAAFAVRSQGSVGVDPDVLMAR 888
++ L +E++ R+ +L Q+ L R+ R+ G R
Sbjct: 2045 MKKDLPSHIQEML-------RRKEILDAQLDELSRQ--------RALCRGG--------R 2081
Query: 889 DQNRDTLLQNLAAAVENRDKVLVEMSRFHILEGRFRPGSNFNLEEARASLEASFANEAEI 948
+ R L +++A + R ++ S+ ++GR + N + E+ +
Sbjct: 2082 EMQRQELDEHIAIVSKERQEL---ASKIKEVQGRPQRAQN------------TIILESHV 2126
Query: 949 VFTTVSSSGRKLFSRLTHG-----FDMVVIDEAAQASEVGVLPPLSLGAARCVLGGGSSA 1003
+ T+S+SG L G F V++DEA Q+ EV L PL + +L G
Sbjct: 2127 ICCTLSTSGGLLLESAFRGQGGVPFSCVIVDEAGQSCEVETLSPLIHRCNKLILVGDPKQ 2186
Query: 1004 AP 1005
P
Sbjct: 2187 LP 2188
>sp|Q7Z333|SETX_HUMAN Probable helicase senataxin OS=Homo sapiens GN=SETX PE=1 SV=4
Length = 2677
Score = 76.3 bits (186), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 100/418 (23%), Positives = 168/418 (40%), Gaps = 95/418 (22%)
Query: 599 VLGSLATTQREYVALHAFCRLNSQMQTAILKPSPEHFPKYEHQTPTMPECFTQNFIDHLH 658
V+ SL TTQR+ A+ N Q+ A+L P+P F + T T ++ I +L
Sbjct: 1879 VISSLVTTQRKLKAMSLLGSRN-QLARAVLNPNPMDFCTKDLLTTT-----SERIIAYL- 1931
Query: 659 RTFNGPQLAAIQWAAIHTAAGTSSGMTKSPWPFTLVQGPPGTGKTHTVWGMLNVIHLVQY 718
R FN Q AI+ A + S + K L+ GPPGTGK+ T+ G
Sbjct: 1932 RDFNEDQKKAIETA--YAMVKHSPSVAK----ICLIHGPPGTGKSKTIVG---------- 1975
Query: 719 QHYYNSLLKKLAPESYKQPNESNSDNVSMGSIDEVLQNMDQNLLRTLPKLCPKPRMLVCA 778
LL +L E+ ++ + + N ++ QN R+LVCA
Sbjct: 1976 ------LLYRLLTENQRKGHSDENSNA------KIKQN----------------RVLVCA 2007
Query: 779 PSNAATDELLTRVLDRGFIDGEMKVYRPDVARVGVDSQTRAAQAVSVERRTEQLLVKS-- 836
PSNAA DEL+ +++ + K + + G + R S+ + + S
Sbjct: 2008 PSNAAVDELMKKIILE--FKEKCKDKKNPLGNCGDINLVRLGPEKSINSEVLKFSLDSQV 2065
Query: 837 ----REEVIGWMHNLKGREAVLSQQIANLQRELNAAAFAVRSQGSVGVDPDVLMARDQNR 892
++E+ + + R+ L Q+ L R+ R+ G R+ R
Sbjct: 2066 NHRMKKELPSHVQAMHKRKEFLDYQLDELSRQ--------RALCRGG--------REIQR 2109
Query: 893 DTLLQNLAAAVENRDKVLVEMSRFHILEGRFRPGSNFNLEEARASLEASFANEAEIVFTT 952
L +N++ + R ++ S+ ++GR + ++ E+ I+ T
Sbjct: 2110 QELDENISKVSKERQEL---ASKIKEVQGRPQ------------KTQSIIILESHIICCT 2154
Query: 953 VSSSGRKLFSRLTHG-----FDMVVIDEAAQASEVGVLPPLSLGAARCVLGGGSSAAP 1005
+S+SG L G F V++DEA Q+ E+ L PL + +L G P
Sbjct: 2155 LSTSGGLLLESAFRGQGGVPFSCVIVDEAGQSCEIETLTPLIHRCNKLILVGDPKQLP 2212
>sp|B6SFA4|MAA3_ARATH Probable helicase MAGATAMA 3 OS=Arabidopsis thaliana GN=MAA3 PE=2
SV=1
Length = 818
Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 47/160 (29%), Positives = 76/160 (47%), Gaps = 20/160 (12%)
Query: 691 FTLVQGPPGTGKTHTVWGMLNVIH-----LVQYQ---HYYNSLLKKLAPESYKQPNESNS 742
F L+QGPPGTGKT T+ +L I VQ + H ++ E Y ++
Sbjct: 275 FVLIQGPPGTGKTQTILSILGAIMHATPARVQSKGTDHEVKRGIQMTIQEKYNHWGRASP 334
Query: 743 DNVSMGSIDEVL-QNMDQNLLRTL-PKLCP---------KPRMLVCAPSNAATDELLTRV 791
+ + D ++ ++ D T +L P + R+LVCAPSN+A DE++ R+
Sbjct: 335 WILGVNPRDAIMPEDGDDGFFPTSGNELKPEVVNASRKYRLRVLVCAPSNSALDEIVLRL 394
Query: 792 LDRGFIDGEMKVYRPDVARVGVDSQTRAAQAVSVERRTEQ 831
L G D + Y P + R+G+ + A +VS++ Q
Sbjct: 395 LSSGLRDENAQTYTPKIVRIGLKAHHSVA-SVSLDHLVAQ 433
Score = 54.7 bits (130), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/59 (49%), Positives = 36/59 (61%), Gaps = 3/59 (5%)
Query: 937 SLEASFANEAEIVFTTVSSSGRKLFSRLTHGFDMVVIDEAAQASEVGVLPPLSLGAARC 995
S+ + EA IVF T+S SG L ++ GFD+V+IDEAAQA E L PL A RC
Sbjct: 453 SIRTAILEEAAIVFATLSFSGSALLAKSNRGFDVVIIDEAAQAVEPATLIPL---ATRC 508
Score = 36.2 bits (82), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 21/31 (67%)
Query: 431 ELQCVPGRFESVEEYVRVFEPLLFEECRAQL 461
+L V ++ V++Y FEPLLFEE +AQ+
Sbjct: 46 KLNVVKNTYKDVDDYFETFEPLLFEEVKAQI 76
>sp|P30771|NAM7_YEAST ATP-dependent helicase NAM7 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=NAM7 PE=1 SV=1
Length = 971
Score = 47.8 bits (112), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 77/315 (24%), Positives = 104/315 (33%), Gaps = 146/315 (46%)
Query: 690 PFTLVQGPPGTGKTHTVWGMLNVIHLVQYQHYYNSLLKKLAPESYKQPNESNSDNVSMGS 749
P +L+QGPPGTGK TV V HL +
Sbjct: 424 PLSLIQGPPGTGK--TVTSATIVYHLSKIH------------------------------ 451
Query: 750 IDEVLQNMDQNLLRTLPKLCPKPRMLVCAPSNAATDELLTRVLDRGFIDGEMKVYRPDVA 809
K R+LVCAPSN A D L ++ D G +KV R
Sbjct: 452 ---------------------KDRILVCAPSNVAVDHLAAKLRDLG-----LKVVR---- 481
Query: 810 RVGVDSQTRAAQAVSVERRTEQLLVKSREEVIG-----WMHNLKGREAVLSQQIANLQRE 864
L KSRE+V +HNL GR
Sbjct: 482 ----------------------LTAKSREDVESSVSNLALHNLVGR-------------- 505
Query: 865 LNAAAFAVRSQGSVGVDPDVLMARDQNRDTLLQNLAAAVENRDKVLVEMSRFHILEGRFR 924
G+ G ++L +D+ + L+A+ R LV +
Sbjct: 506 -----------GAKGELKNLLKLKDE-----VGELSASDTKRFVKLVRKT---------- 539
Query: 925 PGSNFNLEEARASLEASFANEAEIVFTTVSSSGRKLFSRLTHGFDMVVIDEAAQASEVGV 984
EA N+A++V T +G K RL F V+IDE+ QASE
Sbjct: 540 --------------EAEILNKADVVCCTCVGAGDK---RLDTKFRTVLIDESTQASEPEC 582
Query: 985 LPPLSLGAARCVLGG 999
L P+ GA + +L G
Sbjct: 583 LIPIVKGAKQVILVG 597
>sp|Q09820|RENT1_SCHPO ATP-dependent helicase upf1 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=upf1 PE=3 SV=2
Length = 925
Score = 44.3 bits (103), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 78/338 (23%), Positives = 113/338 (33%), Gaps = 137/338 (40%)
Query: 662 NGPQLAAIQWAAIHTAAGTSSGMTKSPWPFTLVQGPPGTGKTHTVWGMLNVIHLVQYQHY 721
N P+L A Q A+ P +L+QGPPGTGKT T + V HL Q
Sbjct: 389 NLPKLNASQSEAVRAVLSK---------PLSLIQGPPGTGKTVTSASV--VYHLATMQ-- 435
Query: 722 YNSLLKKLAPESYKQPNESNSDNVSMGSIDEVLQNMDQNLLRTLPKLCPKPRMLVCAPSN 781
S K+ + S +LVCAPSN
Sbjct: 436 -----------SRKRKSHSP--------------------------------VLVCAPSN 452
Query: 782 AATDELLTRVLDRGFIDGEMKVYRPDVARVGVDSQTRAAQAVSVERRTEQLLVKSREEVI 841
A D+L ++ G V RV S+ +VS + E++
Sbjct: 453 VAVDQLAEKIHRTGL----------RVVRVAAKSREDIESSVS--------FLSLHEQIK 494
Query: 842 GWMHNLKGREAVLSQQIANLQRELNAAAFAVRSQGSVGVDPDVLMARDQNRDTLLQNLAA 901
+ N LQR +L R +N + +Q+
Sbjct: 495 NYKFN------------PELQR--------------------LLKLRSENNELSIQD--- 519
Query: 902 AVENRDKVLVEMSRFHILEGRFRPGSNFNLEEARASLEASFANEAEIVFTTVSSSGRKLF 961
E + ++LV A+ E A ++ T +G +
Sbjct: 520 --EKKLRILV------------------------AAAEKELLRAAHVICCTCVGAGDRRI 553
Query: 962 SRLTHGFDMVVIDEAAQASEVGVLPPLSLGAARCVLGG 999
S+ + F V+IDEA QASE + PL LGA + VL G
Sbjct: 554 SK--YKFRSVLIDEATQASEPECMIPLVLGAKQVVLVG 589
>sp|Q0VA52|SPA5L_XENTR Spermatogenesis-associated protein 5-like protein 1 OS=Xenopus
tropicalis GN=spata5l1 PE=2 SV=1
Length = 593
Score = 41.6 bits (96), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 69/256 (26%), Positives = 98/256 (38%), Gaps = 62/256 (24%)
Query: 692 TLVQGPPGTGKTHTVWGMLNVIHLVQYQHYYNSL----------------LKKLAPESYK 735
L+ GPPG GKT V + + Y L L+K+ ++
Sbjct: 228 VLLIGPPGVGKTLLVKAVAR-----EVGAYVIGLSGPAIHGSRPGESEENLRKI----FE 278
Query: 736 QPNESNSDNVSMGSIDEVLQNMDQNLLRTLPKLCPKPRMLVCAPSNAATDELLTRVLDRG 795
+ E+ ++ IDEV LCPK AP N +LLT
Sbjct: 279 KAREAACSGPALLFIDEV------------DALCPKRGHSNSAPENRVVAQLLT------ 320
Query: 796 FIDGEMKVYRPDVARVGVDSQTRAAQAVSVERRTEQLLVKSREEVIGWMHNLKGREAVLS 855
+DG D V V + +R RR + RE +IG K R+A+L
Sbjct: 321 LMDG----IDSDNKMVTVAATSRPDAIDPALRRPGRF---DREVIIG-TPTHKQRQAILE 372
Query: 856 QQIANL--QRELNAAAFAVRSQGSVGVDPDVLMARDQNRDTLLQNLAAAVENRDKVLVEM 913
I+N+ R+++AAA A + G VG D L RD +LQ + D + +
Sbjct: 373 MMISNMPTDRDVDAAALADVTVGYVGADLTAL-CRDAAMQAVLQ------ASLDSLCNLV 425
Query: 914 SRFHILEG--RFRPGS 927
SR H E R RP S
Sbjct: 426 SRAHFYEAFKRIRPSS 441
>sp|Q57568|Y104_METJA Uncharacterized ATP-dependent helicase MJ0104 OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=MJ0104 PE=3 SV=1
Length = 663
Score = 38.9 bits (89), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 47/98 (47%), Gaps = 8/98 (8%)
Query: 910 LVEMSRFHILEGRFRPGSNFNLEEARASLEASFANEAEIVFTTVSSSGRKLFSRLTHG-- 967
+V M+ + I + + N NL+E + EA+++ T S +G S + G
Sbjct: 340 IVSMAEWIIRNKKIKRIIN-NLDEITEKIMNEILAEADVIVATNSMAG----SEILKGWE 394
Query: 968 FDMVVIDEAAQASEVGVLPPLSLGAARCVLGGGSSAAP 1005
FD++VIDE +QA E L P+ G + ++ G P
Sbjct: 395 FDVIVIDEGSQAMEPSCLIPIVKG-RKLIMAGDHKQLP 431
>sp|Q54I89|RENT1_DICDI Regulator of nonsense transcripts 1 OS=Dictyostelium discoideum
GN=upf1 PE=3 SV=1
Length = 1331
Score = 38.5 bits (88), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Query: 935 RASLEASFANEAEIVFTTVSSSGRKLFSRLTHGFDMVVIDEAAQASEVGVLPPLSLGAAR 994
R +E + +A+++ T +G S+ F ++IDE+ QASE L PL +GA +
Sbjct: 669 RRMMEMAILRKADVICATCVGAGDPRLSQFR--FPHILIDESTQASEPECLIPLMMGAKQ 726
Query: 995 CVLGG 999
+L G
Sbjct: 727 VILVG 731
Score = 36.6 bits (83), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 62/137 (45%), Gaps = 37/137 (27%)
Query: 591 PKGIWYLTVLGSLATTQREYVALHAFC----RLNSQMQTAIL-----KPSPEHFPKYEHQ 641
PKG + + ++ +++R A+ +F L+S + A+L P+P + Q
Sbjct: 470 PKGSYRMEMVWRSTSSERILSAMKSFAIKEQALSSYLYHALLGHPDIPPAP-----LDIQ 524
Query: 642 TPTMPECFTQNFIDHLHRTFNGPQLAAIQWAAIHTAAGTSSGMTKSPWPFTLVQGPPGTG 701
PT NF HL N P+L Q +A++ P +L+QGPPGTG
Sbjct: 525 LPT-------NF--HLK---NLPRLNESQISAVNKVLTA---------PLSLIQGPPGTG 563
Query: 702 KTHTVWGMLNVIHLVQY 718
K TV + HLV+Y
Sbjct: 564 K--TVISSFIIHHLVKY 578
>sp|P32644|ECM32_YEAST Putative ATP-dependent RNA helicase ECM32 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=ECM32 PE=1
SV=1
Length = 1121
Score = 38.1 bits (87), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 34/51 (66%), Gaps = 3/51 (5%)
Query: 945 EAEIVFTT-VSSSGRKLFSRLTHGFDMVVIDEAAQASEVGVLPPLSLGAAR 994
+++I+FTT +++ GR+L ++ +V++DEA Q+SE L PLSL R
Sbjct: 792 QSQIIFTTNIAAGGREL--KVIKECPVVIMDEATQSSEASTLVPLSLPGIR 840
>sp|A7Z0D5|SYS_BACA2 Serine--tRNA ligase OS=Bacillus amyloliquefaciens (strain FZB42)
GN=serS PE=3 SV=1
Length = 425
Score = 35.8 bits (81), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 38/73 (52%)
Query: 833 LVKSREEVIGWMHNLKGREAVLSQQIANLQRELNAAAFAVRSQGSVGVDPDVLMARDQNR 892
L + R E+IG + LKG+ +SQQ+A L+RE A ++ VG + L +
Sbjct: 34 LDEKRRELIGKVEELKGKRNEVSQQVAVLKREKKDADHIIKEMREVGEEIKKLDEELRTV 93
Query: 893 DTLLQNLAAAVEN 905
+T L+ + ++ N
Sbjct: 94 ETTLETILLSIPN 106
>sp|Q60560|SMBP2_MESAU DNA-binding protein SMUBP-2 OS=Mesocricetus auratus GN=IGHMBP2 PE=1
SV=1
Length = 989
Score = 35.4 bits (80), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Query: 968 FDMVVIDEAAQASEVGVLPPLSLGAARCVLGGGSSAAP 1005
FD+VV+DE AQA E PL L A +C+L G P
Sbjct: 368 FDVVVVDECAQALEASCWIPL-LKAPKCILAGDHRQLP 404
>sp|Q5T7V8|GORAB_HUMAN RAB6-interacting golgin OS=Homo sapiens GN=GORAB PE=1 SV=1
Length = 394
Score = 34.7 bits (78), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
Query: 288 QNPPVVTRTVKEARTIPSPAERGGEKQSQAINKDQKQYDVSSCNEGGTSVEALEPKPECN 347
Q PP + T+ T+ SP G+ Q Q I K+ + + ++G +VE L PKP+C
Sbjct: 101 QKPPFSSPTLPSHFTLTSPV---GDGQPQGIESQPKELGLENSHDGHNNVEILPPKPDCK 157
>sp|Q221N9|GLGA_RHOFD Glycogen synthase OS=Rhodoferax ferrireducens (strain DSM 15236 /
ATCC BAA-621 / T118) GN=glgA PE=3 SV=1
Length = 494
Score = 34.7 bits (78), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 45/100 (45%), Gaps = 2/100 (2%)
Query: 781 NAATDELLTRVLDRGFIDGEMKVYRPDVARVGVDSQTRAAQAVSVERRTEQLLVKSREEV 840
N ATD LL D + G+ R + G++ + A +V R TEQ + +V
Sbjct: 267 NPATDALLPAPYDEHKLQGKTLAKRALQTKFGLEPRANALVFGAVSRLTEQKGLHLLPQV 326
Query: 841 IGWMHNLKGREAVLSQQIANLQRELNAAAFAVRSQGSVGV 880
+ M G+ A+L Q L+R A A+R G VGV
Sbjct: 327 LADMVQRGGQLALLGQGDVALERAFVDA--AIRYPGQVGV 364
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.313 0.129 0.375
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 388,573,841
Number of Sequences: 539616
Number of extensions: 16982874
Number of successful extensions: 42269
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 250
Number of HSP's that attempted gapping in prelim test: 41334
Number of HSP's gapped (non-prelim): 833
length of query: 1019
length of database: 191,569,459
effective HSP length: 128
effective length of query: 891
effective length of database: 122,498,611
effective search space: 109146262401
effective search space used: 109146262401
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 66 (30.0 bits)