Query 042849
Match_columns 1019
No_of_seqs 297 out of 2004
Neff 5.6
Searched_HMMs 29240
Date Mon Mar 25 17:50:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042849.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042849hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4b3f_X DNA-binding protein smu 100.0 2.1E-40 7E-45 400.1 36.5 395 441-1018 3-416 (646)
2 2gk6_A Regulator of nonsense t 100.0 1.1E-35 3.9E-40 357.7 32.0 382 434-1018 1-390 (624)
3 2wjy_A Regulator of nonsense t 100.0 2.4E-34 8.1E-39 354.3 35.4 387 429-1018 172-566 (800)
4 2xzl_A ATP-dependent helicase 100.0 3.9E-34 1.3E-38 352.7 35.5 387 428-1018 173-568 (802)
5 3e1s_A Exodeoxyribonuclease V, 99.5 1.4E-13 4.9E-18 164.3 12.7 66 658-791 187-252 (574)
6 1w36_D RECD, exodeoxyribonucle 99.4 2.2E-13 7.4E-18 163.8 11.0 44 967-1010 262-307 (608)
7 3upu_A ATP-dependent DNA helic 99.3 8.5E-12 2.9E-16 144.8 10.9 71 659-791 24-94 (459)
8 3lfu_A DNA helicase II; SF1 he 99.2 1.6E-10 5.5E-15 138.5 15.9 70 658-793 7-76 (647)
9 3vkw_A Replicase large subunit 99.1 8.8E-11 3E-15 135.7 8.1 43 967-1010 234-278 (446)
10 1uaa_A REP helicase, protein ( 98.7 5.3E-07 1.8E-11 109.2 19.9 68 660-793 2-69 (673)
11 1pjr_A PCRA; DNA repair, DNA r 98.5 8.9E-07 3E-11 108.5 16.3 70 658-793 9-78 (724)
12 2fz4_A DNA repair protein RAD2 98.2 1.1E-05 3.9E-10 85.4 13.6 64 659-793 92-155 (237)
13 3b6e_A Interferon-induced heli 98.1 9.8E-06 3.4E-10 82.4 10.7 39 659-711 32-70 (216)
14 2gxq_A Heat resistant RNA depe 98.0 4.6E-05 1.6E-09 77.3 14.0 73 659-793 22-94 (207)
15 1qde_A EIF4A, translation init 98.0 6E-05 2.1E-09 77.7 13.7 69 659-793 35-104 (224)
16 3oiy_A Reverse gyrase helicase 98.0 5.2E-05 1.8E-09 85.6 13.9 71 655-793 16-86 (414)
17 2pl3_A Probable ATP-dependent 97.9 7.9E-05 2.7E-09 77.7 13.3 74 659-793 46-119 (236)
18 2z0m_A 337AA long hypothetical 97.9 0.0001 3.5E-09 79.7 13.8 64 659-793 15-78 (337)
19 1vec_A ATP-dependent RNA helic 97.9 0.00021 7.3E-09 72.4 15.2 70 659-793 24-93 (206)
20 1t6n_A Probable ATP-dependent 97.8 0.00028 9.4E-09 72.6 15.2 69 660-793 36-104 (220)
21 1hv8_A Putative ATP-dependent 97.8 0.00017 5.7E-09 78.8 14.3 70 659-793 27-96 (367)
22 3ber_A Probable ATP-dependent 97.8 0.00021 7.3E-09 75.8 14.7 70 659-793 64-133 (249)
23 2fwr_A DNA repair protein RAD2 97.8 0.00013 4.3E-09 84.0 13.4 64 659-793 92-155 (472)
24 3bor_A Human initiation factor 97.7 0.00015 5.3E-09 75.9 11.9 70 659-793 51-120 (237)
25 3ly5_A ATP-dependent RNA helic 97.7 0.00022 7.6E-09 76.2 13.2 72 660-793 76-148 (262)
26 2oxc_A Probable ATP-dependent 97.7 0.00032 1.1E-08 73.1 13.9 68 660-793 46-114 (230)
27 3h1t_A Type I site-specific re 97.7 0.00012 4E-09 87.1 11.9 44 659-711 177-220 (590)
28 3iuy_A Probable ATP-dependent 97.7 0.00023 7.8E-09 73.8 12.2 76 659-793 41-116 (228)
29 1wp9_A ATP-dependent RNA helic 97.6 0.00025 8.7E-09 79.5 12.5 66 660-793 9-74 (494)
30 1s2m_A Putative ATP-dependent 97.6 0.00041 1.4E-08 77.3 14.0 69 660-793 43-111 (400)
31 3eiq_A Eukaryotic initiation f 97.6 0.00055 1.9E-08 76.4 14.7 70 659-793 61-130 (414)
32 1xti_A Probable ATP-dependent 97.6 0.00065 2.2E-08 75.2 14.7 70 659-793 29-98 (391)
33 1wrb_A DJVLGB; RNA helicase, D 97.5 0.00092 3.1E-08 70.4 14.5 23 771-793 100-122 (253)
34 2j0s_A ATP-dependent RNA helic 97.5 0.00076 2.6E-08 75.5 14.3 70 659-793 58-127 (410)
35 3fe2_A Probable ATP-dependent 97.5 0.00069 2.4E-08 71.1 13.0 34 659-706 50-83 (242)
36 3llm_A ATP-dependent RNA helic 97.4 0.00036 1.2E-08 73.3 9.8 71 660-793 61-131 (235)
37 1fuu_A Yeast initiation factor 97.4 0.00064 2.2E-08 75.2 12.2 70 659-793 42-111 (394)
38 2i4i_A ATP-dependent RNA helic 97.4 0.0013 4.4E-08 73.5 14.5 23 771-793 101-123 (417)
39 4a2p_A RIG-I, retinoic acid in 97.4 0.00082 2.8E-08 78.0 13.1 71 660-793 7-77 (556)
40 3tbk_A RIG-I helicase domain; 97.4 0.00077 2.6E-08 78.0 12.7 71 660-793 4-74 (555)
41 3fho_A ATP-dependent RNA helic 97.3 0.00041 1.4E-08 81.3 9.3 71 660-793 141-211 (508)
42 1gm5_A RECG; helicase, replica 97.3 0.0017 5.9E-08 80.3 15.1 80 652-793 360-439 (780)
43 2va8_A SSO2462, SKI2-type heli 97.3 0.00036 1.2E-08 85.0 9.0 67 659-791 29-95 (715)
44 3i5x_A ATP-dependent RNA helic 97.2 0.0023 8E-08 75.1 14.2 75 660-793 94-168 (563)
45 4ddu_A Reverse gyrase; topoiso 97.2 0.0021 7.1E-08 82.4 14.4 68 658-793 76-143 (1104)
46 3sqw_A ATP-dependent RNA helic 97.1 0.0031 1.1E-07 74.8 14.2 75 660-793 43-117 (579)
47 2zj8_A DNA helicase, putative 97.1 0.00072 2.5E-08 82.4 8.8 67 659-792 22-89 (720)
48 4a2q_A RIG-I, retinoic acid in 97.1 0.0025 8.5E-08 78.7 13.4 72 659-793 247-318 (797)
49 2p6r_A Afuhel308 helicase; pro 97.1 0.00071 2.4E-08 82.2 8.4 65 659-791 24-88 (702)
50 4gl2_A Interferon-induced heli 97.0 0.0012 4.2E-08 79.5 9.7 72 660-793 7-79 (699)
51 2db3_A ATP-dependent RNA helic 97.0 0.0063 2.1E-07 69.6 15.1 24 770-793 128-151 (434)
52 3dmq_A RNA polymerase-associat 97.0 0.0019 6.3E-08 81.8 11.1 41 659-711 152-192 (968)
53 2ykg_A Probable ATP-dependent 97.0 0.003 1E-07 76.1 12.2 72 659-793 12-83 (696)
54 3crv_A XPD/RAD3 related DNA he 96.9 0.011 3.7E-07 70.0 16.2 41 941-981 144-187 (551)
55 1z63_A Helicase of the SNF2/RA 96.9 0.0052 1.8E-07 71.1 12.9 58 944-1003 127-189 (500)
56 3u4q_A ATP-dependent helicase/ 96.9 0.0011 3.9E-08 85.8 7.9 71 659-793 9-79 (1232)
57 2eyq_A TRCF, transcription-rep 96.8 0.0054 1.8E-07 79.0 13.2 80 652-793 595-674 (1151)
58 1rif_A DAR protein, DNA helica 96.8 0.0034 1.2E-07 67.4 9.6 68 659-793 112-179 (282)
59 1oyw_A RECQ helicase, ATP-depe 96.7 0.0054 1.9E-07 72.3 11.0 66 659-795 24-89 (523)
60 2v1x_A ATP-dependent DNA helic 96.6 0.0088 3E-07 71.7 12.5 65 660-795 44-108 (591)
61 3mwy_W Chromo domain-containin 96.6 0.01 3.5E-07 73.5 13.4 60 944-1003 344-407 (800)
62 4a2w_A RIG-I, retinoic acid in 96.6 0.0061 2.1E-07 76.9 11.4 72 659-793 247-318 (936)
63 1gku_B Reverse gyrase, TOP-RG; 96.5 0.0082 2.8E-07 76.6 12.0 23 771-793 99-121 (1054)
64 3dkp_A Probable ATP-dependent 96.5 0.0087 3E-07 62.5 9.8 71 659-793 50-120 (245)
65 3ec2_A DNA replication protein 96.4 0.003 1E-07 63.1 5.8 46 662-712 16-61 (180)
66 3te6_A Regulatory protein SIR3 96.4 0.0025 8.4E-08 70.9 5.1 45 662-713 25-69 (318)
67 3pey_A ATP-dependent RNA helic 96.3 0.012 4E-07 64.8 10.2 72 659-793 26-97 (395)
68 1z3i_X Similar to RAD54-like; 96.3 0.041 1.4E-06 66.4 15.8 51 657-712 52-102 (644)
69 1q0u_A Bstdead; DEAD protein, 96.3 0.0085 2.9E-07 61.6 8.3 70 659-793 25-94 (219)
70 2oca_A DAR protein, ATP-depend 96.0 0.015 5.2E-07 67.4 9.8 69 659-794 112-180 (510)
71 3n70_A Transport activator; si 96.0 0.006 2.1E-07 59.2 5.4 18 692-709 27-44 (145)
72 1jbk_A CLPB protein; beta barr 96.0 0.007 2.4E-07 59.1 5.6 23 690-712 44-66 (195)
73 3bos_A Putative DNA replicatio 95.9 0.0089 3E-07 61.2 6.2 24 690-713 53-76 (242)
74 3fht_A ATP-dependent RNA helic 95.8 0.021 7.1E-07 63.4 9.2 72 659-793 46-117 (412)
75 1tue_A Replication protein E1; 95.6 0.0039 1.3E-07 65.5 2.3 22 691-712 60-81 (212)
76 3co5_A Putative two-component 95.6 0.0057 1.9E-07 59.3 3.4 18 692-709 30-47 (143)
77 3o8b_A HCV NS3 protease/helica 95.6 0.016 5.5E-07 70.4 7.8 22 771-792 257-278 (666)
78 2p65_A Hypothetical protein PF 95.6 0.0092 3.2E-07 58.4 4.7 23 690-712 44-66 (187)
79 2chg_A Replication factor C sm 95.4 0.019 6.5E-07 57.4 6.2 40 662-712 22-61 (226)
80 3t15_A Ribulose bisphosphate c 95.4 0.0085 2.9E-07 65.3 3.9 23 690-712 37-59 (293)
81 1ofh_A ATP-dependent HSL prote 95.3 0.025 8.6E-07 60.5 7.4 22 691-712 52-73 (310)
82 1njg_A DNA polymerase III subu 95.3 0.021 7.3E-07 57.5 6.5 41 662-712 28-68 (250)
83 4fcw_A Chaperone protein CLPB; 95.1 0.031 1.1E-06 60.1 7.4 23 690-712 48-70 (311)
84 2w58_A DNAI, primosome compone 95.1 0.012 4E-07 59.6 3.8 22 690-711 55-76 (202)
85 2qz4_A Paraplegin; AAA+, SPG7, 95.0 0.014 4.8E-07 61.1 4.2 22 690-711 40-61 (262)
86 2qby_B CDC6 homolog 3, cell di 94.9 0.026 8.8E-07 62.4 6.2 45 662-713 25-69 (384)
87 4a4z_A Antiviral helicase SKI2 94.9 0.05 1.7E-06 69.1 9.3 68 658-793 37-104 (997)
88 3uk6_A RUVB-like 2; hexameric 94.9 0.03 1E-06 61.8 6.5 23 690-712 71-93 (368)
89 3fmo_B ATP-dependent RNA helic 94.8 0.055 1.9E-06 59.0 8.2 23 771-793 162-184 (300)
90 2v1u_A Cell division control p 94.7 0.02 7E-07 62.9 4.7 45 662-713 24-68 (387)
91 3syl_A Protein CBBX; photosynt 94.7 0.018 6.3E-07 61.9 4.2 24 690-713 68-91 (309)
92 2r44_A Uncharacterized protein 94.7 0.015 5.3E-07 63.5 3.5 20 692-711 49-68 (331)
93 3h4m_A Proteasome-activating n 94.6 0.018 6E-07 61.4 3.7 22 690-711 52-73 (285)
94 2vl7_A XPD; helicase, unknown 94.6 0.059 2E-06 63.7 8.5 23 771-793 51-73 (540)
95 3fmp_B ATP-dependent RNA helic 94.6 0.076 2.6E-06 61.0 9.2 35 659-705 113-147 (479)
96 2dr3_A UPF0273 protein PH0284; 94.5 0.053 1.8E-06 55.9 7.0 24 688-711 22-45 (247)
97 1fnn_A CDC6P, cell division co 94.5 0.038 1.3E-06 61.0 6.3 46 662-712 22-67 (389)
98 3b9p_A CG5977-PA, isoform A; A 94.5 0.018 6.3E-07 61.8 3.6 23 689-711 54-76 (297)
99 3cf0_A Transitional endoplasmi 94.5 0.019 6.5E-07 62.5 3.7 23 689-711 49-71 (301)
100 4b4t_M 26S protease regulatory 94.5 0.015 5.1E-07 67.3 2.9 21 692-712 218-238 (434)
101 1sxj_C Activator 1 40 kDa subu 94.4 0.037 1.3E-06 61.0 5.9 22 692-713 49-70 (340)
102 4b4t_K 26S protease regulatory 94.4 0.017 5.8E-07 66.7 3.3 21 692-712 209-229 (428)
103 1d2n_A N-ethylmaleimide-sensit 94.4 0.018 6.1E-07 61.3 3.1 23 690-712 65-87 (272)
104 1l8q_A Chromosomal replication 94.3 0.023 7.8E-07 62.1 3.7 24 690-713 38-61 (324)
105 3eie_A Vacuolar protein sortin 94.2 0.025 8.4E-07 62.1 3.9 23 690-712 52-74 (322)
106 2bjv_A PSP operon transcriptio 94.2 0.043 1.5E-06 58.0 5.5 22 690-711 30-51 (265)
107 4b4t_J 26S protease regulatory 94.1 0.02 7E-07 65.6 3.1 24 688-712 182-205 (405)
108 2qgz_A Helicase loader, putati 94.1 0.026 9.1E-07 62.0 3.9 23 690-712 153-175 (308)
109 4b4t_L 26S protease subunit RP 94.1 0.023 7.9E-07 65.8 3.5 21 692-712 218-238 (437)
110 1u0j_A DNA replication protein 94.1 0.054 1.8E-06 58.8 6.1 50 654-711 76-126 (267)
111 1xwi_A SKD1 protein; VPS4B, AA 94.1 0.026 8.9E-07 62.3 3.7 22 690-711 46-67 (322)
112 2r62_A Cell division protease 94.1 0.015 5.3E-07 61.4 1.8 20 692-711 47-66 (268)
113 1lv7_A FTSH; alpha/beta domain 94.1 0.025 8.6E-07 59.5 3.4 20 692-711 48-67 (257)
114 1in4_A RUVB, holliday junction 94.1 0.029 1E-06 62.0 4.0 22 690-711 52-73 (334)
115 1iqp_A RFCS; clamp loader, ext 94.0 0.059 2E-06 57.9 6.3 23 691-713 48-70 (327)
116 3pfi_A Holliday junction ATP-d 94.0 0.05 1.7E-06 59.4 5.8 44 662-711 34-77 (338)
117 2qby_A CDC6 homolog 1, cell di 93.8 0.037 1.3E-06 60.7 4.3 25 689-713 45-69 (386)
118 2kjq_A DNAA-related protein; s 93.8 0.036 1.2E-06 54.5 3.7 24 689-712 36-59 (149)
119 1hqc_A RUVB; extended AAA-ATPa 93.8 0.056 1.9E-06 58.4 5.6 22 690-711 39-60 (324)
120 2w0m_A SSO2452; RECA, SSPF, un 93.8 0.11 3.9E-06 52.6 7.6 24 688-711 22-45 (235)
121 1sxj_D Activator 1 41 kDa subu 93.7 0.029 1E-06 61.2 3.2 22 692-713 61-82 (353)
122 2zpa_A Uncharacterized protein 93.7 0.062 2.1E-06 65.2 6.1 39 660-710 175-213 (671)
123 1ixz_A ATP-dependent metallopr 93.7 0.031 1E-06 58.8 3.1 20 692-711 52-71 (254)
124 2r2a_A Uncharacterized protein 93.6 0.031 1.1E-06 57.9 3.1 21 690-710 6-26 (199)
125 2c9o_A RUVB-like 1; hexameric 93.6 0.083 2.8E-06 61.0 6.8 22 691-712 65-86 (456)
126 4b4t_I 26S protease regulatory 93.6 0.029 9.8E-07 64.8 2.9 21 692-712 219-239 (437)
127 3pvs_A Replication-associated 93.5 0.057 2E-06 62.6 5.4 22 690-711 51-72 (447)
128 2x8a_A Nuclear valosin-contain 93.5 0.032 1.1E-06 60.2 3.1 22 689-711 45-66 (274)
129 2zts_A Putative uncharacterize 93.5 0.14 4.8E-06 52.7 7.8 24 688-711 29-52 (251)
130 3hws_A ATP-dependent CLP prote 93.5 0.078 2.7E-06 59.0 6.2 22 690-711 52-73 (363)
131 3u61_B DNA polymerase accessor 93.5 0.064 2.2E-06 58.3 5.4 42 661-712 30-71 (324)
132 3l9o_A ATP-dependent RNA helic 93.5 0.11 3.8E-06 66.7 8.3 68 658-793 182-249 (1108)
133 2xgj_A ATP-dependent RNA helic 93.4 0.13 4.4E-06 65.5 8.8 34 659-706 85-118 (1010)
134 3nbx_X ATPase RAVA; AAA+ ATPas 93.4 0.037 1.3E-06 65.2 3.6 20 692-711 44-63 (500)
135 1jr3_A DNA polymerase III subu 93.4 0.092 3.2E-06 57.7 6.6 24 690-713 39-62 (373)
136 2xau_A PRE-mRNA-splicing facto 93.4 0.11 3.8E-06 64.2 7.9 68 662-793 95-162 (773)
137 4b4t_H 26S protease regulatory 93.3 0.033 1.1E-06 64.8 3.0 21 692-712 246-266 (467)
138 2qp9_X Vacuolar protein sortin 93.3 0.045 1.6E-06 61.2 4.0 21 692-712 87-107 (355)
139 1g8p_A Magnesium-chelatase 38 93.3 0.028 9.5E-07 61.5 2.1 20 692-711 48-67 (350)
140 1w36_B RECB, exodeoxyribonucle 93.2 0.069 2.4E-06 69.0 5.9 62 690-793 17-78 (1180)
141 1sxj_B Activator 1 37 kDa subu 93.2 0.096 3.3E-06 56.1 6.1 22 692-713 45-66 (323)
142 1um8_A ATP-dependent CLP prote 93.1 0.044 1.5E-06 61.3 3.4 22 690-711 73-94 (376)
143 1ojl_A Transcriptional regulat 93.1 0.081 2.8E-06 57.9 5.4 22 690-711 26-47 (304)
144 2chq_A Replication factor C sm 93.0 0.044 1.5E-06 58.8 3.2 22 692-713 41-62 (319)
145 1iy2_A ATP-dependent metallopr 93.0 0.044 1.5E-06 58.6 3.1 20 692-711 76-95 (278)
146 2z83_A Helicase/nucleoside tri 93.0 0.086 2.9E-06 60.9 5.7 22 771-792 50-71 (459)
147 3d8b_A Fidgetin-like protein 1 92.9 0.051 1.8E-06 60.7 3.7 22 690-711 118-139 (357)
148 1sxj_A Activator 1 95 kDa subu 92.8 0.079 2.7E-06 62.2 5.1 23 690-712 78-100 (516)
149 2zan_A Vacuolar protein sortin 92.8 0.054 1.9E-06 62.5 3.6 22 690-711 168-189 (444)
150 2jlq_A Serine protease subunit 92.7 0.093 3.2E-06 60.4 5.5 22 771-792 48-69 (451)
151 2v6i_A RNA helicase; membrane, 92.4 0.12 4.1E-06 59.3 5.8 22 771-792 31-52 (431)
152 1w5s_A Origin recognition comp 92.3 0.1 3.5E-06 58.0 5.0 46 663-713 28-76 (412)
153 1yks_A Genome polyprotein [con 92.3 0.12 4.1E-06 59.5 5.6 23 771-793 37-59 (440)
154 2z4s_A Chromosomal replication 92.1 0.065 2.2E-06 61.8 3.1 24 690-713 131-154 (440)
155 3vfd_A Spastin; ATPase, microt 92.0 0.078 2.7E-06 59.7 3.6 22 690-711 149-170 (389)
156 2orw_A Thymidine kinase; TMTK, 92.0 0.15 5.1E-06 51.8 5.3 22 690-711 4-25 (184)
157 4a15_A XPD helicase, ATP-depen 91.9 0.32 1.1E-05 58.6 8.9 22 771-792 51-72 (620)
158 1sxj_E Activator 1 40 kDa subu 91.8 0.068 2.3E-06 58.6 2.7 22 692-713 39-60 (354)
159 3pxg_A Negative regulator of g 91.7 0.18 6.1E-06 58.5 6.3 22 692-713 204-225 (468)
160 1a5t_A Delta prime, HOLB; zinc 91.5 0.21 7.2E-06 55.1 6.3 24 690-713 25-48 (334)
161 2vhj_A Ntpase P4, P4; non- hyd 91.3 0.082 2.8E-06 59.0 2.7 22 690-711 124-145 (331)
162 2ce7_A Cell division protein F 91.1 0.094 3.2E-06 61.3 3.1 20 692-711 52-71 (476)
163 1gvn_B Zeta; postsegregational 91.1 0.27 9.2E-06 53.4 6.5 22 690-711 34-55 (287)
164 3pxi_A Negative regulator of g 91.0 0.24 8.4E-06 60.7 6.8 46 663-712 497-544 (758)
165 3bh0_A DNAB-like replicative h 90.9 0.29 9.9E-06 53.7 6.6 24 688-711 67-90 (315)
166 3m6a_A ATP-dependent protease 90.9 0.12 4.2E-06 61.1 3.9 25 688-712 107-131 (543)
167 1n0w_A DNA repair protein RAD5 90.9 0.13 4.5E-06 52.9 3.6 24 688-711 23-46 (243)
168 2b8t_A Thymidine kinase; deoxy 90.8 0.22 7.4E-06 52.6 5.3 25 688-712 11-35 (223)
169 2cvh_A DNA repair and recombin 90.8 0.14 4.9E-06 51.8 3.7 24 688-711 19-42 (220)
170 3lw7_A Adenylate kinase relate 90.7 0.12 4.1E-06 49.8 3.0 20 690-709 2-21 (179)
171 3rc3_A ATP-dependent RNA helic 90.6 0.29 9.7E-06 59.7 6.8 24 773-796 181-204 (677)
172 1ly1_A Polynucleotide kinase; 90.6 0.14 4.6E-06 50.2 3.2 21 691-711 4-24 (181)
173 1r6b_X CLPA protein; AAA+, N-t 90.5 0.29 9.8E-06 60.0 6.7 48 663-712 464-511 (758)
174 1zp6_A Hypothetical protein AT 90.4 0.13 4.3E-06 51.3 2.9 22 689-710 9-30 (191)
175 1p9r_A General secretion pathw 90.4 0.26 9E-06 56.6 5.9 41 660-712 150-190 (418)
176 3hu3_A Transitional endoplasmi 90.4 0.13 4.5E-06 60.3 3.4 21 691-711 240-260 (489)
177 2dhr_A FTSH; AAA+ protein, hex 90.1 0.12 4.3E-06 60.7 3.0 20 692-711 67-86 (499)
178 2whx_A Serine protease/ntpase/ 90.1 0.25 8.4E-06 59.6 5.6 22 771-792 215-236 (618)
179 2w00_A HSDR, R.ECOR124I; ATP-b 90.1 0.42 1.4E-05 61.0 7.9 82 660-793 271-352 (1038)
180 3kb2_A SPBC2 prophage-derived 90.0 0.17 6E-06 49.0 3.5 21 691-711 3-23 (173)
181 3hr8_A Protein RECA; alpha and 89.9 0.3 1E-05 55.0 5.7 24 688-711 60-83 (356)
182 1nks_A Adenylate kinase; therm 89.6 0.18 6.1E-06 49.8 3.3 21 691-711 3-23 (194)
183 2ehv_A Hypothetical protein PH 89.6 0.18 6.2E-06 52.0 3.4 24 688-711 29-52 (251)
184 1ye8_A Protein THEP1, hypothet 89.5 0.2 6.9E-06 50.6 3.6 21 692-712 3-23 (178)
185 3pxi_A Negative regulator of g 89.5 0.33 1.1E-05 59.6 6.1 21 692-712 204-224 (758)
186 2qen_A Walker-type ATPase; unk 89.4 0.29 9.8E-06 52.9 4.9 36 663-711 18-53 (350)
187 4a1f_A DNAB helicase, replicat 89.4 0.46 1.6E-05 53.1 6.7 24 688-711 45-68 (338)
188 1kht_A Adenylate kinase; phosp 89.4 0.21 7.3E-06 49.3 3.6 22 690-711 4-25 (192)
189 3iij_A Coilin-interacting nucl 89.3 0.24 8E-06 49.0 3.9 22 690-711 12-33 (180)
190 1nlf_A Regulatory protein REPA 89.2 0.21 7.2E-06 53.4 3.6 24 688-711 29-52 (279)
191 1q57_A DNA primase/helicase; d 89.2 0.35 1.2E-05 56.4 5.8 24 688-711 241-264 (503)
192 2wv9_A Flavivirin protease NS2 89.1 0.33 1.1E-05 59.1 5.7 23 771-793 270-292 (673)
193 4eun_A Thermoresistant glucoki 89.0 0.26 8.8E-06 50.0 4.0 23 689-711 29-51 (200)
194 3k1j_A LON protease, ATP-depen 89.0 0.29 1E-05 58.6 5.1 22 690-711 61-82 (604)
195 1qhx_A CPT, protein (chloramph 88.9 0.21 7.2E-06 49.0 3.2 22 690-711 4-25 (178)
196 3trf_A Shikimate kinase, SK; a 88.9 0.26 8.8E-06 48.8 3.8 22 690-711 6-27 (185)
197 2gno_A DNA polymerase III, gam 88.8 0.27 9.4E-06 54.0 4.3 23 689-711 18-40 (305)
198 2r6a_A DNAB helicase, replicat 88.8 0.64 2.2E-05 53.6 7.6 24 688-711 202-225 (454)
199 1kag_A SKI, shikimate kinase I 88.6 0.22 7.5E-06 48.7 3.0 21 690-710 5-25 (173)
200 3vaa_A Shikimate kinase, SK; s 88.5 0.29 9.9E-06 49.5 4.0 23 689-711 25-47 (199)
201 3tau_A Guanylate kinase, GMP k 88.5 0.27 9.3E-06 50.3 3.8 24 688-711 7-30 (208)
202 3cf2_A TER ATPase, transitiona 88.5 0.18 6E-06 62.7 2.7 20 692-711 241-260 (806)
203 3kl4_A SRP54, signal recogniti 88.5 0.33 1.1E-05 56.1 4.8 24 689-712 97-120 (433)
204 2bdt_A BH3686; alpha-beta prot 88.5 0.22 7.6E-06 49.6 3.0 22 690-711 3-24 (189)
205 4a74_A DNA repair and recombin 88.4 0.21 7.1E-06 50.9 2.8 24 688-711 24-47 (231)
206 2q6t_A DNAB replication FORK h 88.4 0.66 2.2E-05 53.3 7.3 24 688-711 199-222 (444)
207 1qvr_A CLPB protein; coiled co 88.4 0.48 1.6E-05 59.0 6.6 49 662-712 563-611 (854)
208 1c4o_A DNA nucleotide excision 88.4 0.85 2.9E-05 55.3 8.6 68 660-793 8-75 (664)
209 1r6b_X CLPA protein; AAA+, N-t 88.3 0.4 1.4E-05 58.7 5.7 24 690-713 208-231 (758)
210 2r8r_A Sensor protein; KDPD, P 88.3 0.39 1.3E-05 51.0 4.9 22 692-713 9-30 (228)
211 2rhm_A Putative kinase; P-loop 88.3 0.25 8.5E-06 49.0 3.2 22 690-711 6-27 (193)
212 1g41_A Heat shock protein HSLU 88.3 0.19 6.6E-06 58.3 2.7 21 691-711 52-72 (444)
213 2plr_A DTMP kinase, probable t 88.3 0.27 9.4E-06 49.3 3.6 22 690-711 5-26 (213)
214 3dm5_A SRP54, signal recogniti 88.3 0.34 1.2E-05 56.2 4.7 24 689-712 100-123 (443)
215 2fna_A Conserved hypothetical 88.3 0.22 7.5E-06 53.8 3.0 23 690-712 31-53 (357)
216 3io5_A Recombination and repai 88.1 0.21 7.3E-06 55.6 2.8 23 689-711 28-50 (333)
217 1svm_A Large T antigen; AAA+ f 88.0 0.27 9.4E-06 55.8 3.7 24 688-711 168-191 (377)
218 1knq_A Gluconate kinase; ALFA/ 88.0 0.34 1.2E-05 47.6 3.9 23 689-711 8-30 (175)
219 3cf2_A TER ATPase, transitiona 87.9 0.21 7.2E-06 62.0 2.9 20 692-711 514-533 (806)
220 1cr0_A DNA primase/helicase; R 87.9 0.3 1E-05 52.5 3.8 24 688-711 34-57 (296)
221 3bgw_A DNAB-like replicative h 87.8 0.49 1.7E-05 54.7 5.8 24 688-711 196-219 (444)
222 2cdn_A Adenylate kinase; phosp 87.6 0.39 1.3E-05 48.4 4.2 21 691-711 22-42 (201)
223 2zr9_A Protein RECA, recombina 87.5 0.31 1E-05 54.6 3.6 24 688-711 60-83 (349)
224 2j41_A Guanylate kinase; GMP, 87.3 0.34 1.2E-05 48.5 3.6 23 689-711 6-28 (207)
225 2p5t_B PEZT; postsegregational 87.3 0.62 2.1E-05 49.2 5.7 22 690-711 33-54 (253)
226 3tr0_A Guanylate kinase, GMP k 87.2 0.37 1.3E-05 48.3 3.8 23 689-711 7-29 (205)
227 2ze6_A Isopentenyl transferase 87.1 0.34 1.2E-05 51.5 3.6 21 691-711 3-23 (253)
228 1tev_A UMP-CMP kinase; ploop, 86.9 0.38 1.3E-05 47.5 3.6 22 690-711 4-25 (196)
229 3t61_A Gluconokinase; PSI-biol 86.8 0.36 1.2E-05 48.7 3.4 22 690-711 19-40 (202)
230 1qf9_A UMP/CMP kinase, protein 86.8 0.41 1.4E-05 47.2 3.8 22 690-711 7-28 (194)
231 3cm0_A Adenylate kinase; ATP-b 86.7 0.39 1.3E-05 47.4 3.6 22 690-711 5-26 (186)
232 2z43_A DNA repair and recombin 86.7 0.31 1.1E-05 53.6 3.1 24 688-711 106-129 (324)
233 3jvv_A Twitching mobility prot 86.6 0.36 1.2E-05 54.3 3.6 26 688-713 122-147 (356)
234 1via_A Shikimate kinase; struc 86.5 0.4 1.4E-05 47.2 3.5 21 691-711 6-26 (175)
235 2jaq_A Deoxyguanosine kinase; 86.4 0.41 1.4E-05 47.7 3.6 21 691-711 2-22 (205)
236 2qor_A Guanylate kinase; phosp 86.4 0.4 1.4E-05 48.7 3.5 24 688-711 11-34 (204)
237 2c95_A Adenylate kinase 1; tra 86.4 0.42 1.4E-05 47.4 3.6 22 690-711 10-31 (196)
238 1kgd_A CASK, peripheral plasma 86.3 0.43 1.5E-05 47.6 3.7 23 689-711 5-27 (180)
239 1ypw_A Transitional endoplasmi 86.2 0.35 1.2E-05 60.0 3.5 24 688-711 237-260 (806)
240 1u94_A RECA protein, recombina 86.2 0.43 1.5E-05 53.7 3.9 25 688-712 62-86 (356)
241 3uie_A Adenylyl-sulfate kinase 86.1 0.45 1.5E-05 48.1 3.7 24 688-711 24-47 (200)
242 1ypw_A Transitional endoplasmi 86.0 0.27 9.3E-06 61.0 2.4 24 689-712 511-534 (806)
243 2yvu_A Probable adenylyl-sulfa 86.0 0.45 1.6E-05 47.3 3.6 23 689-711 13-35 (186)
244 2bbw_A Adenylate kinase 4, AK4 86.0 0.4 1.4E-05 50.2 3.3 21 690-710 28-48 (246)
245 2iyv_A Shikimate kinase, SK; t 86.0 0.46 1.6E-05 47.0 3.7 22 690-711 3-24 (184)
246 2i1q_A DNA repair and recombin 86.0 0.32 1.1E-05 53.1 2.7 24 688-711 97-120 (322)
247 1qvr_A CLPB protein; coiled co 85.6 0.33 1.1E-05 60.5 2.9 22 692-713 194-215 (854)
248 1y63_A LMAJ004144AAA protein; 85.6 0.42 1.4E-05 47.8 3.2 22 690-711 11-32 (184)
249 2z0h_A DTMP kinase, thymidylat 85.5 0.48 1.6E-05 47.1 3.5 21 691-711 2-22 (197)
250 3dl0_A Adenylate kinase; phosp 85.5 0.38 1.3E-05 48.9 2.9 20 692-711 3-22 (216)
251 3c8u_A Fructokinase; YP_612366 85.4 0.51 1.7E-05 48.1 3.8 24 688-711 21-44 (208)
252 4f92_B U5 small nuclear ribonu 85.4 1.8 6.1E-05 58.1 9.8 70 659-793 925-994 (1724)
253 3fb4_A Adenylate kinase; psych 85.3 0.44 1.5E-05 48.4 3.2 20 692-711 3-22 (216)
254 1f2t_A RAD50 ABC-ATPase; DNA d 85.3 0.52 1.8E-05 46.1 3.6 24 689-712 23-46 (149)
255 1aky_A Adenylate kinase; ATP:A 85.1 0.58 2E-05 47.9 4.0 22 690-711 5-26 (220)
256 2eyu_A Twitching motility prot 85.0 0.51 1.8E-05 50.6 3.7 25 688-712 24-48 (261)
257 1ak2_A Adenylate kinase isoenz 85.0 0.51 1.7E-05 49.0 3.6 22 690-711 17-38 (233)
258 1xjc_A MOBB protein homolog; s 85.0 0.56 1.9E-05 47.4 3.7 24 690-713 5-28 (169)
259 1nn5_A Similar to deoxythymidy 84.9 0.55 1.9E-05 47.3 3.7 22 690-711 10-31 (215)
260 3f9v_A Minichromosome maintena 84.9 0.23 8E-06 59.5 1.0 19 692-710 330-348 (595)
261 2ewv_A Twitching motility prot 84.9 0.48 1.6E-05 53.5 3.5 25 688-712 135-159 (372)
262 1v5w_A DMC1, meiotic recombina 84.9 0.44 1.5E-05 53.0 3.2 24 688-711 121-144 (343)
263 1e6c_A Shikimate kinase; phosp 84.9 0.54 1.9E-05 45.7 3.5 21 691-711 4-24 (173)
264 1xx6_A Thymidine kinase; NESG, 84.8 0.9 3.1E-05 46.6 5.3 22 690-711 9-30 (191)
265 2px0_A Flagellar biosynthesis 84.7 0.54 1.9E-05 51.4 3.8 24 689-712 105-128 (296)
266 2vli_A Antibiotic resistance p 84.7 0.37 1.3E-05 47.3 2.3 21 690-710 6-26 (183)
267 2bwj_A Adenylate kinase 5; pho 84.7 0.55 1.9E-05 46.7 3.5 22 690-711 13-34 (199)
268 1zak_A Adenylate kinase; ATP:A 84.5 0.58 2E-05 48.0 3.7 22 690-711 6-27 (222)
269 2pbr_A DTMP kinase, thymidylat 84.4 0.57 2E-05 46.2 3.5 21 691-711 2-22 (195)
270 2j37_W Signal recognition part 84.4 1 3.5E-05 53.0 6.2 23 690-712 102-124 (504)
271 3qks_A DNA double-strand break 84.2 0.62 2.1E-05 47.8 3.8 25 689-713 23-47 (203)
272 2xb4_A Adenylate kinase; ATP-b 84.2 0.58 2E-05 48.3 3.6 21 691-711 2-22 (223)
273 1pzn_A RAD51, DNA repair and r 84.2 0.44 1.5E-05 53.2 2.8 24 688-711 130-153 (349)
274 4gp7_A Metallophosphoesterase; 84.1 0.41 1.4E-05 47.5 2.3 20 689-708 9-28 (171)
275 1vma_A Cell division protein F 84.1 0.58 2E-05 51.5 3.7 23 689-711 104-126 (306)
276 2wwf_A Thymidilate kinase, put 84.1 0.61 2.1E-05 46.9 3.6 22 690-711 11-32 (212)
277 1np6_A Molybdopterin-guanine d 83.9 0.65 2.2E-05 46.9 3.7 23 690-712 7-29 (174)
278 1ukz_A Uridylate kinase; trans 83.7 0.54 1.8E-05 47.3 3.0 22 690-711 16-37 (203)
279 1zu4_A FTSY; GTPase, signal re 83.7 0.98 3.4E-05 49.9 5.3 24 688-711 104-127 (320)
280 3a4m_A L-seryl-tRNA(SEC) kinas 83.6 0.51 1.7E-05 50.1 2.9 22 690-711 5-26 (260)
281 1zd8_A GTP:AMP phosphotransfer 83.6 0.48 1.6E-05 48.9 2.6 22 690-711 8-29 (227)
282 3u4q_B ATP-dependent helicase/ 83.5 1.2 4.1E-05 57.3 6.8 22 690-711 2-23 (1166)
283 1xp8_A RECA protein, recombina 83.5 0.61 2.1E-05 52.6 3.6 25 688-712 73-97 (366)
284 3kta_A Chromosome segregation 83.5 0.6 2E-05 46.1 3.2 23 689-711 26-48 (182)
285 2v9p_A Replication protein E1; 83.4 0.72 2.5E-05 50.9 4.0 24 688-711 125-148 (305)
286 1m7g_A Adenylylsulfate kinase; 83.4 0.68 2.3E-05 47.2 3.6 23 689-711 25-47 (211)
287 2i3b_A HCR-ntpase, human cance 83.2 0.73 2.5E-05 47.0 3.8 23 690-712 2-24 (189)
288 2v54_A DTMP kinase, thymidylat 83.2 0.65 2.2E-05 46.4 3.3 21 690-710 5-25 (204)
289 3a00_A Guanylate kinase, GMP k 82.9 0.68 2.3E-05 46.3 3.3 22 690-711 2-23 (186)
290 3be4_A Adenylate kinase; malar 82.7 0.68 2.3E-05 47.5 3.3 21 691-711 7-27 (217)
291 1jjv_A Dephospho-COA kinase; P 82.4 0.62 2.1E-05 47.0 2.8 19 691-709 4-22 (206)
292 1e4v_A Adenylate kinase; trans 82.3 0.64 2.2E-05 47.4 2.9 20 692-711 3-22 (214)
293 1zuh_A Shikimate kinase; alpha 82.2 0.84 2.9E-05 44.5 3.6 21 690-710 8-28 (168)
294 1lvg_A Guanylate kinase, GMP k 82.1 0.81 2.8E-05 46.5 3.6 22 690-711 5-26 (198)
295 3tlx_A Adenylate kinase 2; str 82.1 0.79 2.7E-05 48.2 3.6 22 690-711 30-51 (243)
296 2pt5_A Shikimate kinase, SK; a 82.0 0.85 2.9E-05 44.2 3.6 20 692-711 3-22 (168)
297 3lda_A DNA repair protein RAD5 81.8 0.67 2.3E-05 52.9 3.1 23 688-710 177-199 (400)
298 1j8m_F SRP54, signal recogniti 81.8 1.7 5.7E-05 47.5 6.2 23 689-711 98-120 (297)
299 1cke_A CK, MSSA, protein (cyti 81.6 0.86 3E-05 46.4 3.6 22 690-711 6-27 (227)
300 1gtv_A TMK, thymidylate kinase 81.5 0.4 1.4E-05 48.4 1.0 21 691-711 2-22 (214)
301 2qmh_A HPR kinase/phosphorylas 81.5 0.77 2.6E-05 47.9 3.1 22 690-711 35-56 (205)
302 2oap_1 GSPE-2, type II secreti 81.4 1.1 3.8E-05 52.7 4.9 38 661-711 245-282 (511)
303 2pez_A Bifunctional 3'-phospho 80.8 0.99 3.4E-05 44.5 3.6 22 690-711 6-27 (179)
304 3lnc_A Guanylate kinase, GMP k 80.7 0.71 2.4E-05 47.7 2.6 23 688-710 26-48 (231)
305 2v3c_C SRP54, signal recogniti 80.7 0.91 3.1E-05 52.3 3.7 24 690-713 100-123 (432)
306 1ltq_A Polynucleotide kinase; 80.6 0.81 2.8E-05 49.0 3.1 22 690-711 3-24 (301)
307 2qt1_A Nicotinamide riboside k 80.3 0.83 2.8E-05 46.2 2.9 22 689-710 21-42 (207)
308 3asz_A Uridine kinase; cytidin 80.1 0.96 3.3E-05 45.7 3.3 23 689-711 6-28 (211)
309 2wsm_A Hydrogenase expression/ 80.0 1.4 4.9E-05 44.5 4.6 23 690-712 31-53 (221)
310 4edh_A DTMP kinase, thymidylat 79.6 2.7 9.3E-05 43.6 6.6 22 690-711 7-28 (213)
311 3umf_A Adenylate kinase; rossm 79.6 1.1 3.8E-05 46.9 3.6 22 690-711 30-51 (217)
312 1rj9_A FTSY, signal recognitio 79.6 1.2 4.2E-05 48.8 4.1 23 689-711 102-124 (304)
313 1z6g_A Guanylate kinase; struc 79.5 1.1 3.7E-05 46.3 3.5 24 688-711 22-45 (218)
314 3e70_C DPA, signal recognition 79.3 1.1 3.9E-05 49.7 3.8 24 688-711 128-151 (328)
315 1rz3_A Hypothetical protein rb 79.3 1.1 3.7E-05 45.5 3.3 23 689-711 22-44 (201)
316 4eaq_A DTMP kinase, thymidylat 79.2 1.1 3.8E-05 46.8 3.6 22 690-711 27-48 (229)
317 2if2_A Dephospho-COA kinase; a 79.0 0.98 3.3E-05 45.4 3.0 20 691-710 3-22 (204)
318 3ney_A 55 kDa erythrocyte memb 79.0 1.2 4.1E-05 46.1 3.6 24 688-711 18-41 (197)
319 3cmu_A Protein RECA, recombina 78.8 0.99 3.4E-05 61.0 3.6 25 688-712 1426-1450(2050)
320 3b9q_A Chloroplast SRP recepto 78.6 1.2 4.1E-05 48.8 3.7 24 688-711 99-122 (302)
321 1znw_A Guanylate kinase, GMP k 78.6 1.3 4.3E-05 45.1 3.6 24 688-711 19-42 (207)
322 4akg_A Glutathione S-transfera 77.8 0.94 3.2E-05 62.9 3.1 20 692-711 1270-1289(2695)
323 3b85_A Phosphate starvation-in 77.6 2 6.7E-05 44.5 4.8 23 689-711 22-44 (208)
324 1yrb_A ATP(GTP)binding protein 77.5 1.9 6.6E-05 44.8 4.8 25 688-712 13-37 (262)
325 1tf7_A KAIC; homohexamer, hexa 77.5 1.2 4.2E-05 52.2 3.6 24 688-711 280-303 (525)
326 3sr0_A Adenylate kinase; phosp 77.3 1.4 4.8E-05 45.6 3.5 20 692-711 3-22 (206)
327 3ake_A Cytidylate kinase; CMP 76.9 1.6 5.5E-05 43.6 3.8 21 691-711 4-24 (208)
328 1htw_A HI0065; nucleotide-bind 76.7 1.3 4.6E-05 43.8 3.1 24 688-711 32-55 (158)
329 2qm8_A GTPase/ATPase; G protei 76.3 1.5 5.2E-05 48.6 3.7 25 688-712 54-78 (337)
330 2hf9_A Probable hydrogenase ni 76.2 2.1 7.1E-05 43.4 4.5 23 690-712 39-61 (226)
331 1s96_A Guanylate kinase, GMP k 76.2 1.6 5.4E-05 45.5 3.6 24 688-711 15-38 (219)
332 2ga8_A Hypothetical 39.9 kDa p 75.8 1.4 4.8E-05 49.7 3.2 23 691-713 26-48 (359)
333 3p32_A Probable GTPase RV1496/ 75.7 1.6 5.5E-05 48.6 3.7 24 690-713 80-103 (355)
334 3qkt_A DNA double-strand break 75.4 1.7 5.7E-05 48.0 3.8 25 689-713 23-47 (339)
335 1ex7_A Guanylate kinase; subst 75.3 1.7 5.7E-05 44.5 3.4 20 692-711 4-23 (186)
336 3cpe_A Terminase, DNA packagin 75.3 6 0.00021 47.1 8.8 67 660-792 163-229 (592)
337 3v9p_A DTMP kinase, thymidylat 75.1 2.7 9.3E-05 44.2 5.1 23 689-711 25-47 (227)
338 3aez_A Pantothenate kinase; tr 74.8 1.8 6.1E-05 47.6 3.8 24 688-711 89-112 (312)
339 3crm_A TRNA delta(2)-isopenten 74.8 1.5 5.3E-05 48.7 3.2 22 690-711 6-27 (323)
340 4ag6_A VIRB4 ATPase, type IV s 74.6 1.9 6.7E-05 48.2 4.1 24 689-712 35-58 (392)
341 2og2_A Putative signal recogni 74.4 1.7 6E-05 48.9 3.6 24 688-711 156-179 (359)
342 3r20_A Cytidylate kinase; stru 74.2 1.9 6.4E-05 45.7 3.6 22 690-711 10-31 (233)
343 1nrj_B SR-beta, signal recogni 74.0 2.1 7.1E-05 43.1 3.8 22 690-711 13-34 (218)
344 1uj2_A Uridine-cytidine kinase 73.9 1.5 5.3E-05 46.0 2.8 21 690-710 23-43 (252)
345 1tf7_A KAIC; homohexamer, hexa 73.9 1.5 5.3E-05 51.4 3.1 22 688-709 38-59 (525)
346 1vht_A Dephospho-COA kinase; s 73.7 1.6 5.6E-05 44.4 2.9 20 690-709 5-24 (218)
347 1odf_A YGR205W, hypothetical 3 73.5 2.1 7.2E-05 46.6 3.8 23 689-711 31-53 (290)
348 2dyk_A GTP-binding protein; GT 73.2 1.8 6.2E-05 40.8 2.9 20 692-711 4-23 (161)
349 1z6t_A APAF-1, apoptotic prote 73.1 1.7 5.7E-05 51.1 3.2 40 663-711 130-169 (591)
350 1uf9_A TT1252 protein; P-loop, 73.0 1.7 5.8E-05 43.2 2.8 20 690-709 9-28 (203)
351 3clv_A RAB5 protein, putative; 72.9 2.4 8.2E-05 41.2 3.8 20 692-711 10-29 (208)
352 3zvl_A Bifunctional polynucleo 72.9 1.8 6.3E-05 49.3 3.4 22 689-710 258-279 (416)
353 2d7d_A Uvrabc system protein B 72.8 7.1 0.00024 47.2 8.7 68 660-793 12-79 (661)
354 3tqf_A HPR(Ser) kinase; transf 72.7 1.7 5.9E-05 44.5 2.7 21 691-711 18-38 (181)
355 3cmw_A Protein RECA, recombina 72.6 1.8 6.2E-05 57.7 3.6 23 689-711 1082-1104(1706)
356 2jeo_A Uridine-cytidine kinase 72.6 2.2 7.6E-05 44.5 3.7 22 690-711 26-47 (245)
357 1kao_A RAP2A; GTP-binding prot 72.4 1.9 6.6E-05 40.5 2.9 20 692-711 6-25 (167)
358 2yhs_A FTSY, cell division pro 72.3 2.1 7.2E-05 50.3 3.7 24 688-711 292-315 (503)
359 2www_A Methylmalonic aciduria 72.0 2.2 7.7E-05 47.4 3.7 24 689-712 74-97 (349)
360 2fsf_A Preprotein translocase 71.8 11 0.00037 47.0 9.9 36 945-980 163-207 (853)
361 3nwj_A ATSK2; P loop, shikimat 71.5 2.5 8.5E-05 45.1 3.8 22 690-711 49-70 (250)
362 1sq5_A Pantothenate kinase; P- 71.1 2.3 7.9E-05 46.3 3.5 23 689-711 80-102 (308)
363 2xxa_A Signal recognition part 71.0 2.4 8.1E-05 48.9 3.7 24 690-713 101-124 (433)
364 1z2a_A RAS-related protein RAB 70.9 2.2 7.4E-05 40.4 2.9 20 692-711 8-27 (168)
365 3qf7_A RAD50; ABC-ATPase, ATPa 70.9 2.5 8.4E-05 47.4 3.8 24 689-712 23-46 (365)
366 1tf5_A Preprotein translocase 70.8 17 0.00057 45.3 11.3 36 945-980 172-216 (844)
367 2f9l_A RAB11B, member RAS onco 70.7 2.3 7.7E-05 42.4 3.1 20 692-711 8-27 (199)
368 2gza_A Type IV secretion syste 70.6 2 6.8E-05 48.1 2.9 23 689-711 175-197 (361)
369 1ek0_A Protein (GTP-binding pr 70.6 2.2 7.5E-05 40.4 2.9 20 692-711 6-25 (170)
370 4f92_B U5 small nuclear ribonu 70.4 9.5 0.00032 51.3 9.7 79 659-793 78-156 (1724)
371 1wms_A RAB-9, RAB9, RAS-relate 70.3 2.3 7.8E-05 40.8 2.9 20 692-711 10-29 (177)
372 1ky3_A GTP-binding protein YPT 70.1 2.3 7.9E-05 40.8 2.9 20 692-711 11-30 (182)
373 1e9r_A Conjugal transfer prote 70.0 2.4 8.3E-05 48.0 3.5 22 692-713 56-77 (437)
374 3tqc_A Pantothenate kinase; bi 70.0 2.6 8.8E-05 46.8 3.6 21 691-711 94-114 (321)
375 2ce2_X GTPase HRAS; signaling 69.7 2.2 7.4E-05 40.0 2.6 20 692-711 6-25 (166)
376 1g16_A RAS-related protein SEC 69.7 2.2 7.4E-05 40.5 2.6 20 692-711 6-25 (170)
377 2f6r_A COA synthase, bifunctio 69.6 2 6.9E-05 46.2 2.6 20 691-710 77-96 (281)
378 2j9r_A Thymidine kinase; TK1, 69.4 5.2 0.00018 41.9 5.6 23 689-711 28-50 (214)
379 1r2q_A RAS-related protein RAB 69.3 2.4 8.4E-05 40.0 2.9 20 692-711 9-28 (170)
380 2p67_A LAO/AO transport system 69.3 2.5 8.7E-05 46.7 3.4 24 689-712 56-79 (341)
381 1q3t_A Cytidylate kinase; nucl 69.2 3.3 0.00011 42.8 4.1 23 689-711 16-38 (236)
382 2pt7_A CAG-ALFA; ATPase, prote 69.2 1.7 5.9E-05 48.0 2.0 23 689-711 171-193 (330)
383 1z0j_A RAB-22, RAS-related pro 69.0 2.5 8.7E-05 40.0 2.9 20 692-711 9-28 (170)
384 2ged_A SR-beta, signal recogni 68.8 3.3 0.00011 40.5 3.8 22 690-711 49-70 (193)
385 2erx_A GTP-binding protein DI- 68.6 2.5 8.5E-05 40.1 2.7 20 692-711 6-25 (172)
386 4e22_A Cytidylate kinase; P-lo 68.5 2.9 0.0001 44.0 3.5 22 689-710 27-48 (252)
387 3lv8_A DTMP kinase, thymidylat 68.4 3.1 0.00011 44.0 3.6 22 690-711 28-49 (236)
388 1oix_A RAS-related protein RAB 68.4 2.5 8.6E-05 42.0 2.8 21 691-711 31-51 (191)
389 2wji_A Ferrous iron transport 68.3 2.6 9E-05 40.6 2.9 21 691-711 5-25 (165)
390 2h92_A Cytidylate kinase; ross 68.3 2.5 8.4E-05 42.9 2.8 20 691-710 5-24 (219)
391 2cbz_A Multidrug resistance-as 68.2 2.9 9.8E-05 44.0 3.4 24 688-711 30-53 (237)
392 2l8b_A Protein TRAI, DNA helic 68.1 8.4 0.00029 39.7 6.6 63 663-791 37-100 (189)
393 1u8z_A RAS-related protein RAL 67.9 2.7 9.3E-05 39.5 2.9 20 692-711 7-26 (168)
394 3eph_A TRNA isopentenyltransfe 67.8 2.7 9.3E-05 48.2 3.3 22 690-711 3-24 (409)
395 1z08_A RAS-related protein RAB 67.8 2.8 9.4E-05 39.8 2.9 20 692-711 9-28 (170)
396 1sky_E F1-ATPase, F1-ATP synth 67.8 3.2 0.00011 48.5 3.9 23 690-712 152-174 (473)
397 2nzj_A GTP-binding protein REM 67.5 2.7 9.2E-05 40.1 2.7 20 692-711 7-26 (175)
398 1c1y_A RAS-related protein RAP 67.3 2.9 9.7E-05 39.5 2.9 20 692-711 6-25 (167)
399 3ug7_A Arsenical pump-driving 67.3 4.7 0.00016 44.8 5.0 25 688-712 25-49 (349)
400 2obl_A ESCN; ATPase, hydrolase 67.1 2.9 0.0001 46.7 3.3 23 689-711 71-93 (347)
401 3q85_A GTP-binding protein REM 66.8 2.8 9.5E-05 39.9 2.7 19 692-710 5-23 (169)
402 2y8e_A RAB-protein 6, GH09086P 66.8 2.7 9.1E-05 40.2 2.6 20 692-711 17-36 (179)
403 3a8t_A Adenylate isopentenyltr 66.7 2.8 9.7E-05 46.9 3.1 22 690-711 41-62 (339)
404 2lkc_A Translation initiation 66.2 4.1 0.00014 39.1 3.8 22 690-711 9-30 (178)
405 1r8s_A ADP-ribosylation factor 66.2 3.1 0.00011 39.4 2.9 20 692-711 3-22 (164)
406 3gmt_A Adenylate kinase; ssgci 66.1 3 0.0001 44.1 3.0 19 693-711 12-30 (230)
407 3exa_A TRNA delta(2)-isopenten 66.1 3 0.0001 46.3 3.1 22 690-711 4-25 (322)
408 2rcn_A Probable GTPase ENGC; Y 66.1 3.3 0.00011 46.6 3.5 22 690-711 216-237 (358)
409 1ls1_A Signal recognition part 66.0 3.4 0.00012 44.9 3.5 22 690-711 99-120 (295)
410 2f1r_A Molybdopterin-guanine d 65.9 2 6.9E-05 43.1 1.5 23 690-712 3-25 (171)
411 2hxs_A RAB-26, RAS-related pro 65.7 3 0.0001 40.0 2.7 20 692-711 9-28 (178)
412 1z0f_A RAB14, member RAS oncog 65.7 3.2 0.00011 39.7 2.9 20 692-711 18-37 (179)
413 4tmk_A Protein (thymidylate ki 65.7 3.9 0.00013 42.5 3.7 22 690-711 4-25 (213)
414 3bc1_A RAS-related protein RAB 65.6 3.1 0.00011 40.2 2.9 20 692-711 14-33 (195)
415 2pcj_A ABC transporter, lipopr 65.6 3.1 0.00011 43.3 3.0 23 688-710 29-51 (224)
416 1sgw_A Putative ABC transporte 65.6 3.3 0.00011 43.0 3.2 24 688-711 34-57 (214)
417 2onk_A Molybdate/tungstate ABC 65.4 3.6 0.00012 43.4 3.5 22 690-711 25-46 (240)
418 3cmw_A Protein RECA, recombina 65.3 3.4 0.00012 55.1 3.9 25 688-712 731-755 (1706)
419 2efe_B Small GTP-binding prote 65.3 3.3 0.00011 39.9 2.9 20 692-711 15-34 (181)
420 2oil_A CATX-8, RAS-related pro 65.3 3.4 0.00012 40.5 3.1 20 692-711 28-47 (193)
421 1nkt_A Preprotein translocase 64.7 19 0.00064 45.2 9.9 36 945-980 200-244 (922)
422 2zu0_C Probable ATP-dependent 64.7 3.9 0.00013 43.8 3.6 24 688-711 45-68 (267)
423 4dsu_A GTPase KRAS, isoform 2B 64.7 3.4 0.00012 39.9 2.9 20 692-711 7-26 (189)
424 3d3q_A TRNA delta(2)-isopenten 64.7 3.2 0.00011 46.4 3.0 22 690-711 8-29 (340)
425 1mv5_A LMRA, multidrug resista 64.6 3.4 0.00012 43.5 3.0 24 688-711 27-50 (243)
426 2d2e_A SUFC protein; ABC-ATPas 64.6 3.7 0.00013 43.4 3.4 24 688-711 28-51 (250)
427 3tmk_A Thymidylate kinase; pho 64.5 4.2 0.00014 42.4 3.7 23 689-711 5-27 (216)
428 1upt_A ARL1, ADP-ribosylation 64.3 3.5 0.00012 39.2 2.9 20 692-711 10-29 (171)
429 2ocp_A DGK, deoxyguanosine kin 64.2 3.1 0.00011 43.2 2.6 22 690-711 3-24 (241)
430 2o0j_A Terminase, DNA packagin 64.1 16 0.00056 41.4 8.7 38 660-711 163-200 (385)
431 1tq4_A IIGP1, interferon-induc 63.9 4.8 0.00017 46.1 4.4 23 689-711 69-91 (413)
432 2ghi_A Transport protein; mult 63.7 3.9 0.00013 43.6 3.4 24 688-711 45-68 (260)
433 2zej_A Dardarin, leucine-rich 63.7 3.1 0.00011 40.8 2.4 20 692-711 5-24 (184)
434 1svi_A GTP-binding protein YSX 63.6 2.9 0.0001 40.9 2.2 22 690-711 24-45 (195)
435 1m7b_A RND3/RHOE small GTP-bin 63.6 3.3 0.00011 40.5 2.6 20 692-711 10-29 (184)
436 2fn4_A P23, RAS-related protei 63.5 3.4 0.00012 39.5 2.6 20 692-711 12-31 (181)
437 1b0u_A Histidine permease; ABC 63.4 4 0.00014 43.5 3.4 24 688-711 31-54 (262)
438 3con_A GTPase NRAS; structural 63.3 3.7 0.00013 40.1 2.9 20 692-711 24-43 (190)
439 2gf9_A RAS-related protein RAB 63.3 3.7 0.00013 40.2 2.9 20 692-711 25-44 (189)
440 1vpl_A ABC transporter, ATP-bi 63.3 4.1 0.00014 43.5 3.4 24 688-711 40-63 (256)
441 2a9k_A RAS-related protein RAL 63.3 3.7 0.00013 39.5 2.9 20 692-711 21-40 (187)
442 2ipc_A Preprotein translocase 63.2 22 0.00077 44.7 10.2 36 945-980 168-215 (997)
443 2ffh_A Protein (FFH); SRP54, s 63.2 4 0.00014 47.0 3.5 25 689-713 98-122 (425)
444 3foz_A TRNA delta(2)-isopenten 63.2 3.7 0.00013 45.5 3.1 22 690-711 11-32 (316)
445 1ji0_A ABC transporter; ATP bi 63.1 3.9 0.00013 43.0 3.2 24 688-711 31-54 (240)
446 2g6b_A RAS-related protein RAB 63.1 3.8 0.00013 39.4 2.9 20 692-711 13-32 (180)
447 1g6h_A High-affinity branched- 63.1 3.9 0.00013 43.4 3.2 24 688-711 32-55 (257)
448 2wjg_A FEOB, ferrous iron tran 63.0 3.8 0.00013 39.8 2.9 21 691-711 9-29 (188)
449 1vg8_A RAS-related protein RAB 63.0 3.8 0.00013 40.5 2.9 20 692-711 11-30 (207)
450 3tw8_B RAS-related protein RAB 62.9 2.9 9.8E-05 40.1 1.9 19 692-710 12-30 (181)
451 3bwd_D RAC-like GTP-binding pr 62.7 3.9 0.00013 39.4 2.9 20 692-711 11-30 (182)
452 2pze_A Cystic fibrosis transme 62.7 4.1 0.00014 42.5 3.3 24 688-711 33-56 (229)
453 2olj_A Amino acid ABC transpor 62.6 4.3 0.00015 43.5 3.4 24 688-711 49-72 (263)
454 3tkl_A RAS-related protein RAB 62.5 3.9 0.00013 40.0 2.9 20 692-711 19-38 (196)
455 1mh1_A RAC1; GTP-binding, GTPa 62.5 3.9 0.00013 39.4 2.9 20 692-711 8-27 (186)
456 3vkg_A Dynein heavy chain, cyt 62.5 2.7 9.4E-05 59.2 2.3 20 692-711 1307-1326(3245)
457 3tif_A Uncharacterized ABC tra 62.4 4.3 0.00015 42.5 3.4 23 688-710 30-52 (235)
458 2qi9_C Vitamin B12 import ATP- 62.3 4.2 0.00014 43.2 3.3 24 688-711 25-48 (249)
459 2bme_A RAB4A, RAS-related prot 62.2 3.6 0.00012 39.8 2.6 20 692-711 13-32 (186)
460 3bs4_A Uncharacterized protein 62.2 9.7 0.00033 41.0 6.1 25 771-796 49-73 (260)
461 3q72_A GTP-binding protein RAD 61.9 3.4 0.00011 39.2 2.2 19 692-710 5-23 (166)
462 2ixe_A Antigen peptide transpo 61.9 4.4 0.00015 43.5 3.4 24 688-711 44-67 (271)
463 2ff7_A Alpha-hemolysin translo 61.9 4.3 0.00015 43.0 3.2 24 688-711 34-57 (247)
464 1x3s_A RAS-related protein RAB 61.9 4.3 0.00015 39.5 3.1 20 692-711 18-37 (195)
465 2cxx_A Probable GTP-binding pr 61.8 3.3 0.00011 40.2 2.2 20 692-711 4-23 (190)
466 1ihu_A Arsenical pump-driving 61.6 7.3 0.00025 46.1 5.5 25 689-713 8-32 (589)
467 2yz2_A Putative ABC transporte 61.5 4.5 0.00015 43.2 3.4 24 688-711 32-55 (266)
468 3iev_A GTP-binding protein ERA 61.5 3.2 0.00011 45.2 2.2 24 688-711 9-32 (308)
469 3kkq_A RAS-related protein M-R 61.3 4 0.00014 39.5 2.7 20 692-711 21-40 (183)
470 1p5z_B DCK, deoxycytidine kina 61.2 2.5 8.6E-05 44.5 1.3 21 690-710 25-45 (263)
471 2bov_A RAla, RAS-related prote 61.1 4.2 0.00014 40.0 2.9 20 692-711 17-36 (206)
472 3sop_A Neuronal-specific septi 61.1 4.2 0.00014 43.6 3.1 21 692-712 5-25 (270)
473 2a5j_A RAS-related protein RAB 61.1 4.3 0.00015 39.9 2.9 20 692-711 24-43 (191)
474 1nij_A Hypothetical protein YJ 61.0 3.6 0.00012 45.0 2.5 22 690-711 5-26 (318)
475 3pqc_A Probable GTP-binding pr 61.0 3.5 0.00012 40.1 2.2 22 690-711 24-45 (195)
476 3cmu_A Protein RECA, recombina 61.0 4.3 0.00015 55.1 3.6 25 688-712 382-406 (2050)
477 1pui_A ENGB, probable GTP-bind 60.9 2.5 8.6E-05 42.1 1.1 21 690-710 27-47 (210)
478 3c5c_A RAS-like protein 12; GD 60.8 4.4 0.00015 39.9 2.9 20 692-711 24-43 (187)
479 3gfo_A Cobalt import ATP-bindi 60.8 4.6 0.00016 43.6 3.3 24 688-711 33-56 (275)
480 2grj_A Dephospho-COA kinase; T 60.8 4.2 0.00014 41.4 2.8 21 690-710 13-33 (192)
481 1knx_A Probable HPR(Ser) kinas 60.7 3.7 0.00013 45.4 2.5 21 691-711 149-169 (312)
482 3lxx_A GTPase IMAP family memb 60.6 4.1 0.00014 42.1 2.7 20 692-711 32-51 (239)
483 3k53_A Ferrous iron transport 60.6 3.6 0.00012 43.6 2.4 20 692-711 6-25 (271)
484 3ice_A Transcription terminati 60.4 5.5 0.00019 45.7 3.9 23 690-712 175-197 (422)
485 2nq2_C Hypothetical ABC transp 60.4 4.7 0.00016 42.9 3.2 24 688-711 30-53 (253)
486 3cph_A RAS-related protein SEC 60.4 4.7 0.00016 40.0 3.1 20 692-711 23-42 (213)
487 3auy_A DNA double-strand break 60.3 4.8 0.00017 44.9 3.5 23 689-711 25-47 (371)
488 1a7j_A Phosphoribulokinase; tr 60.2 4.3 0.00015 44.0 3.0 22 690-711 6-27 (290)
489 2fg5_A RAB-22B, RAS-related pr 60.1 4.2 0.00014 40.1 2.6 20 692-711 26-45 (192)
490 1zbd_A Rabphilin-3A; G protein 60.0 4.3 0.00015 40.2 2.7 20 692-711 11-30 (203)
491 2atv_A RERG, RAS-like estrogen 59.9 4.6 0.00016 39.8 2.9 20 692-711 31-50 (196)
492 1ega_A Protein (GTP-binding pr 59.7 4.1 0.00014 44.2 2.7 23 689-711 8-30 (301)
493 1zd9_A ADP-ribosylation factor 59.7 4.6 0.00016 39.6 2.9 20 692-711 25-44 (188)
494 3t5g_A GTP-binding protein RHE 59.6 4.1 0.00014 39.3 2.4 20 692-711 9-28 (181)
495 2p5s_A RAS and EF-hand domain 59.6 4.7 0.00016 40.0 2.9 20 692-711 31-50 (199)
496 2ihy_A ABC transporter, ATP-bi 59.6 4.9 0.00017 43.4 3.3 24 688-711 46-69 (279)
497 1lw7_A Transcriptional regulat 59.4 4 0.00014 45.4 2.6 22 690-711 171-192 (365)
498 1z06_A RAS-related protein RAB 59.4 4.8 0.00016 39.4 2.9 20 692-711 23-42 (189)
499 2fh5_B SR-beta, signal recogni 59.3 4.7 0.00016 40.3 2.9 21 691-711 9-29 (214)
500 2gf0_A GTP-binding protein DI- 59.2 4.4 0.00015 39.6 2.6 20 692-711 11-30 (199)
No 1
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=100.00 E-value=2.1e-40 Score=400.07 Aligned_cols=395 Identities=22% Similarity=0.267 Sum_probs=235.7
Q ss_pred CHHHHHHhhhHHHHHHHHHHHHHhHHHhhccC-----CCCcee-EEEEEEeeeccCCeEEEEEcccC--c----cccCCC
Q 042849 441 SVEEYVRVFEPLLFEECRAQLYSTWEELTETG-----SRDTHV-MVRIRNIERRERGWYDVIVLPVN--E----CKWSFK 508 (1019)
Q Consensus 441 S~~eY~~sFePLLLEE~rAqL~ss~ee~~~~~-----sr~~~~-~v~I~sve~~~~~fydV~v~~~~--~----~~~~~~ 508 (1019)
|+++|++.|.+||-.|..+++....+...... .+..++ .+.+...+....|-+.+.+.... . ....|.
T Consensus 3 ~~~~~~~~~~~Ll~~E~~~e~~~~~~~~~~~~~~~~~~~G~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~ 82 (646)
T 4b3f_X 3 AVESFVTKQLDLLELERDAEVEERRSWQENISLKELQSRGVCLLKLQVSSQRTGLYGRLLVTFEPRRYGSAAALPSNSFT 82 (646)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCHHHHGGGTSEEEEEEEEEEEECSSSCEEEEEEESCC---CCCCCCCCC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHhCCceecceEEEEEEecCCCeEEEEEEecCCCCCCCCccCCCC
Confidence 68999999999999999998877665543221 112221 23333333222343444443211 1 123689
Q ss_pred CCCEEEEecCCCCCCCCcCCCCccccccccccccceEeeeeeeccccCCCCCCceEEEEEecccCCCCCCCCchhHHHhh
Q 042849 509 EGDVAVLSTPRPGSVRGKRNHSLAAEDDEEAEVSGRVAGTVRRHFPVDARDPPGAILHFYVGDSYDPSSSMDDDDHILRK 588 (1019)
Q Consensus 509 egDLVLLS~~kP~~~~~~~~~~~~~~d~~~~~~~g~v~g~v~~~~~v~~~~~~~~~vr~~v~~s~d~~~k~~~~~~~l~~ 588 (1019)
.||+|+|+...+.. ... ..|.|.+... ..+.|.+ ....+. ...
T Consensus 83 ~Gd~v~~~~~~~~~---------------~~~----~~g~v~~~~~------~~i~v~~--~~~~~~----------~~~ 125 (646)
T 4b3f_X 83 SGDIVGLYDAANEG---------------SQL----ATGILTRVTQ------KSVTVAF--DESHDF----------QLS 125 (646)
T ss_dssp TTCEEEEEETTTTS---------------CCC----EEEEEEEEET------TEEEEEC--C-----------------C
T ss_pred CCCEEEEEecCCCC---------------Cce----EEEEEEEEeC------CEEEEEE--CCcccc----------ccc
Confidence 99999998765431 011 1233332110 1123332 111110 012
Q ss_pred cCCCceEEEEEecChhhHHHHHHHHhhcccCC----hHHHHhhcCCCCCCCCCcCCCCCCCCcccchhhHhhhccCCChH
Q 042849 589 LQPKGIWYLTVLGSLATTQREYVALHAFCRLN----SQMQTAILKPSPEHFPKYEHQTPTMPECFTQNFIDHLHRTFNGP 664 (1019)
Q Consensus 589 L~~~s~w~l~kL~nLtT~~RE~~AL~~l~~~~----~~l~~~IL~ps~~~~~~~~~~~~~~~~~~~~~l~~~L~~~LNeS 664 (1019)
+.....|.+.++.|.+|+.|++.||..+.... ..+.+.||.-.+..+. . ... ...++...||++
T Consensus 126 ~~~~~~~~~~~~~~~~~~~r~~~al~~l~~~~~~~~~~l~~~l~~~~~p~~~---~--~~~-------~~~~~~~~LN~~ 193 (646)
T 4b3f_X 126 LDRENSYRLLKLANDVTYRRLKKALIALKKYHSGPASSLIEVLFGRSAPSPA---S--EIH-------PLTFFNTCLDTS 193 (646)
T ss_dssp CCSSCCEEEEEECCHHHHHHHHHHHHHHHTCCSSTTHHHHHHHTTSSCCCCC---C--CCC-------CCCCSSTTCCHH
T ss_pred cCCCCcEEEEEeccchHHHHHHHHHHHhhhcccCchHHHHHHHcCCCCCCCc---c--ccC-------cccccCCCCCHH
Confidence 33456799999999999999999999986543 2355666643211100 0 000 022345789999
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCCCCeeEEeCCCCCChhHHHHHHHHHHHHHhhhhhhhhhhhhcCcccccCCCCCCCCc
Q 042849 665 QLAAIQWAAIHTAAGTSSGMTKSPWPFTLVQGPPGTGKTHTVWGMLNVIHLVQYQHYYNSLLKKLAPESYKQPNESNSDN 744 (1019)
Q Consensus 665 Q~eAI~~Al~~~~~g~s~~~~k~~~~fsLIQGPPGTGKTkTI~~LL~~Lll~~~q~~~~sLlk~l~~~~~kq~~~~~s~~ 744 (1019)
|.+||..|+. ..+++|||||||||||+||+.+|..++ +
T Consensus 194 Q~~AV~~al~-------------~~~~~lI~GPPGTGKT~ti~~~I~~l~------------~----------------- 231 (646)
T 4b3f_X 194 QKEAVLFALS-------------QKELAIIHGPPGTGKTTTVVEIILQAV------------K----------------- 231 (646)
T ss_dssp HHHHHHHHHH-------------CSSEEEEECCTTSCHHHHHHHHHHHHH------------H-----------------
T ss_pred HHHHHHHHhc-------------CCCceEEECCCCCCHHHHHHHHHHHHH------------h-----------------
Confidence 9999999883 247999999999999999999886431 1
Q ss_pred ccCCchhHHhhhhhhhhhccCCCCCCCCcEEEEecCchhHHHHHHHHHhcCcccCcccccCCcEEEEcCchhh-hHHhhh
Q 042849 745 VSMGSIDEVLQNMDQNLLRTLPKLCPKPRMLVCAPSNAATDELLTRVLDRGFIDGEMKVYRPDVARVGVDSQT-RAAQAV 823 (1019)
Q Consensus 745 ~~~g~~~e~~~~~~~n~~r~~~k~~~k~RILVCAPSNaAVDEll~RLl~~Gi~d~~g~~y~p~VVRiG~~s~~-~~v~~v 823 (1019)
.+.+||||||||.|||++++||... ..+++|+|...+. ..+...
T Consensus 232 -------------------------~~~~ILv~a~TN~AvD~i~erL~~~----------~~~ilRlG~~~r~~~~~~~~ 276 (646)
T 4b3f_X 232 -------------------------QGLKVLCCAPSNIAVDNLVERLALC----------KQRILRLGHPARLLESIQQH 276 (646)
T ss_dssp -------------------------TTCCEEEEESSHHHHHHHHHHHHHT----------TCCEEECSCCSSCCHHHHTT
T ss_pred -------------------------CCCeEEEEcCchHHHHHHHHHHHhc----------CCceEEecchhhhhhhhhhh
Confidence 2579999999999999999999754 3489999998764 345556
Q ss_pred cHHHHHHHHHHhhHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCChhhhhhhhhhHHHHHHHHHHHH
Q 042849 824 SVERRTEQLLVKSREEVIGWMHNLKGREAVLSQQIANLQRELNAAAFAVRSQGSVGVDPDVLMARDQNRDTLLQNLAAAV 903 (1019)
Q Consensus 824 sLd~rv~~lL~k~~~~~~~~~~~L~~~~~~l~~~i~~L~~~L~~~~~a~rs~~s~~~d~~~l~~~d~~r~~Llq~L~~~~ 903 (1019)
+++..+... + .. ..+..+++++.... .......+. ......+.. +..+.+
T Consensus 277 ~l~~~~~~~------~-------~~-------~~~~~~~~~~~~~~----~~~~~~~~~---~~~~~~~~~-~~~l~~-- 326 (646)
T 4b3f_X 277 SLDAVLARS------D-------SA-------QIVADIRKDIDQVF----VKNKKTQDK---REKSNFRNE-IKLLRK-- 326 (646)
T ss_dssp BHHHHHTTT------T-------CS-------STHHHHHHHHTTSS----TTTTC---------CCSSHHH-HHHHHH--
T ss_pred hHHHHHhhc------h-------HH-------HHHHHHHHHHHHHH----HhhhhhhhH---HHHHHHHHH-HHHHHH--
Confidence 666533210 0 00 00111111111100 000000000 000000000 000000
Q ss_pred HhHHHHHHHHhhhhhhccccCCCCCchhHHHHHHHHHHHhccCcEEEEecccchhHHHhh--hcCCCCEEEEcCCCCCCc
Q 042849 904 ENRDKVLVEMSRFHILEGRFRPGSNFNLEEARASLEASFANEAEIVFTTVSSSGRKLFSR--LTHGFDMVVIDEAAQASE 981 (1019)
Q Consensus 904 ~~r~k~L~elsrl~~l~~r~r~~~~~~l~~~r~~l~~~iL~eA~IV~sTlSssg~~ll~~--l~~~FDvVIIDEAAQa~E 981 (1019)
.+...+......++..++|||+|+++++...... ....||+||||||+|+.|
T Consensus 327 --------------------------~l~~~~~~~~~~~l~~~~vv~~t~~~a~~~~~~~~~~~~~Fd~vIIDEAsQ~~e 380 (646)
T 4b3f_X 327 --------------------------ELKEREEAAMLESLTSANVVLATNTGASADGPLKLLPESYFDVVVIDECAQALE 380 (646)
T ss_dssp --------------------------HHHHHHHHHHHHHHHHCSEEEEETTTTCSSSGGGGSCTTCCSEEEETTGGGSCH
T ss_pred --------------------------HHHHHHHHHHHHHHhhcceeeeehhhhhhhhHHHhhhhccCCEEEEcCccccch
Confidence 0111223344457889999999999987643221 135799999999999999
Q ss_pred cccccccccCCCeEEEecCCCCCCCcccCccccccCC
Q 042849 982 VGVLPPLSLGAARCVLGGGSSAAPCNSYQQGSRHLDV 1018 (1019)
Q Consensus 982 ~stLIPL~~g~kr~ILVGDpkQLPPtV~S~~Ak~lg~ 1018 (1019)
+++|+||. +++|+||||||+||||+|.|..|...|+
T Consensus 381 ~~~lipL~-~~~~~ILVGD~~QLpP~v~~~~a~~~gl 416 (646)
T 4b3f_X 381 ASCWIPLL-KARKCILAGDHKQLPPTTVSHKAALAGL 416 (646)
T ss_dssp HHHTTTGG-GSSEEEEEECTTSCCCCCSCHHHHHTTT
T ss_pred HHHHhhcc-ccceEEEcCCccccCceecchhhhhccc
Confidence 99999995 5799999999999999999999988776
No 2
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=100.00 E-value=1.1e-35 Score=357.68 Aligned_cols=382 Identities=20% Similarity=0.263 Sum_probs=224.0
Q ss_pred ccCcccCCHHHHHHhhhHHHHHHHHHHHHHhHHHhhccCCCCceeEEEEEEeeeccCCeEEEEEc-ccCccccCCCCCCE
Q 042849 434 CVPGRFESVEEYVRVFEPLLFEECRAQLYSTWEELTETGSRDTHVMVRIRNIERRERGWYDVIVL-PVNECKWSFKEGDV 512 (1019)
Q Consensus 434 ~IP~tF~S~~eY~~sFePLLLEE~rAqL~ss~ee~~~~~sr~~~~~v~I~sve~~~~~fydV~v~-~~~~~~~~~~egDL 512 (1019)
+|+.+|.|+.+|+++|.|||..|.+++... ++.... .. +.+. ......+.+.+.+. +..+....+..||+
T Consensus 1 ~~~~~~~~~~~y~~~~~~ll~~E~~~~~~~--~~~~~~----~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Gd~ 71 (624)
T 2gk6_A 1 PLGSRYEDAYQYQNIFGPLVKLEADYDKKL--KESQTQ----DN--ITVR-WDLGLNKKRIAYFTLPKTDSDMRLMQGDE 71 (624)
T ss_dssp --CCCCSSHHHHHHHHHHHHHHHHHHHHHH--HHHTCE----EE--ECEE-EEECTTSCEEEEEECC-------CCTTCE
T ss_pred CcCCccCCHHHHHHHHHHHHHHHHHHHHHH--Hhhhhc----cC--ceEE-eeecCCCceEEEEEecccccCCcCCCCCE
Confidence 478999999999999999999999987543 222111 11 1121 11111233333221 22233457899999
Q ss_pred EEEecCCCCCCCCcCCCCccccccccccccceEeeeeeeccccCCCCCCceEEEEEecccCCCCCCCCchhHHHhhcCCC
Q 042849 513 AVLSTPRPGSVRGKRNHSLAAEDDEEAEVSGRVAGTVRRHFPVDARDPPGAILHFYVGDSYDPSSSMDDDDHILRKLQPK 592 (1019)
Q Consensus 513 VLLS~~kP~~~~~~~~~~~~~~d~~~~~~~g~v~g~v~~~~~v~~~~~~~~~vr~~v~~s~d~~~k~~~~~~~l~~L~~~ 592 (1019)
|+|+...+.. ... ...|.|.+.. ......+.|.+. ...... ....
T Consensus 72 v~l~~~~~~~--------------~~~----~~~g~v~~~~---~~~~~~v~v~~~--~~~~~~------------~~~~ 116 (624)
T 2gk6_A 72 ICLRYKGDLA--------------PLW----KGIGHVIKVP---DNYGDEIAIELR--SSVGAP------------VEVT 116 (624)
T ss_dssp EEEEECSSSS--------------CCC----EEEEEEEECS---CSSCSEEEEEES--CCTTCC------------CSCC
T ss_pred EEEEECCCCC--------------CCc----EEEEEEEEec---CCCCCEEEEEEc--cCCCCc------------cccc
Confidence 9999643321 011 1234444321 000112334331 110000 0112
Q ss_pred ceEEEEEecChhhHHHHHHHHhhcccCC----hHHHHhhcCCCCCCCCCcCCCCCCCCcccchhhHhhhccCCChHHHHH
Q 042849 593 GIWYLTVLGSLATTQREYVALHAFCRLN----SQMQTAILKPSPEHFPKYEHQTPTMPECFTQNFIDHLHRTFNGPQLAA 668 (1019)
Q Consensus 593 s~w~l~kL~nLtT~~RE~~AL~~l~~~~----~~l~~~IL~ps~~~~~~~~~~~~~~~~~~~~~l~~~L~~~LNeSQ~eA 668 (1019)
..+.+.++.+.+|+.|++.||+.+.... ..+...++........ .. ...|..+. ......||++|.+|
T Consensus 117 ~~~~~~~~~~~~~~~r~~~al~~~~~~~~~~~~~~~~~ll~~~~~~~~-~~---~~~~~~~~----~~~~~~ln~~Q~~a 188 (624)
T 2gk6_A 117 HNFQVDFVWKSTSFDRMQSALKTFAVDETSVSGYIYHKLLGHEVEDVI-IK---CQLPKRFT----AQGLPDLNHSQVYA 188 (624)
T ss_dssp SSEEEEECCCCHHHHHHHHHHHHHHHCTTSBCSHHHHHHTTCCCCCCC-CC---CCCCSCCS----CTTSCCCCHHHHHH
T ss_pred cceEEEEEeCCchHHHHHHHHHHHHhccccchHHHHHHhcCCCCcccc-cc---ccCccccc----ccccCCCCHHHHHH
Confidence 3578889999999999999999875332 1244555553221100 00 01111111 11235799999999
Q ss_pred HHHHHHHhhcCCCCCCCCCCCCeeEEeCCCCCChhHHHHHHHHHHHHHhhhhhhhhhhhhcCcccccCCCCCCCCcccCC
Q 042849 669 IQWAAIHTAAGTSSGMTKSPWPFTLVQGPPGTGKTHTVWGMLNVIHLVQYQHYYNSLLKKLAPESYKQPNESNSDNVSMG 748 (1019)
Q Consensus 669 I~~Al~~~~~g~s~~~~k~~~~fsLIQGPPGTGKTkTI~~LL~~Lll~~~q~~~~sLlk~l~~~~~kq~~~~~s~~~~~g 748 (1019)
|..++ ..++.|||||||||||+|++.++..++ +
T Consensus 189 v~~~l--------------~~~~~li~GppGTGKT~~~~~~i~~l~------------~--------------------- 221 (624)
T 2gk6_A 189 VKTVL--------------QRPLSLIQGPPGTGKTVTSATIVYHLA------------R--------------------- 221 (624)
T ss_dssp HHHHH--------------TCSEEEEECCTTSCHHHHHHHHHHHHH------------T---------------------
T ss_pred HHHHh--------------cCCCeEEECCCCCCHHHHHHHHHHHHH------------H---------------------
Confidence 99876 247899999999999999999886431 0
Q ss_pred chhHHhhhhhhhhhccCCCCCCCCcEEEEecCchhHHHHHHHHHhcCcccCcccccCCcEEEEcCchhhh---HHhhhcH
Q 042849 749 SIDEVLQNMDQNLLRTLPKLCPKPRMLVCAPSNAATDELLTRVLDRGFIDGEMKVYRPDVARVGVDSQTR---AAQAVSV 825 (1019)
Q Consensus 749 ~~~e~~~~~~~n~~r~~~k~~~k~RILVCAPSNaAVDEll~RLl~~Gi~d~~g~~y~p~VVRiG~~s~~~---~v~~vsL 825 (1019)
..+.+||+|||||.|+|++++||.+.|+ +++|+|..++.. .+..+++
T Consensus 222 --------------------~~~~~ilv~a~tn~A~~~l~~~l~~~~~----------~~~R~~~~~r~~~~~~~~~~tl 271 (624)
T 2gk6_A 222 --------------------QGNGPVLVCAPSNIAVDQLTEKIHQTGL----------KVVRLCAKSREAIDSPVSFLAL 271 (624)
T ss_dssp --------------------SSSCCEEEEESSHHHHHHHHHHHHTTTC----------CEEECCCTGGGSCCCTTTTTBH
T ss_pred --------------------cCCCeEEEEeCcHHHHHHHHHHHHhcCC----------eEEeeccccchhhccchhhhhH
Confidence 0267999999999999999999976543 689999865321 1122233
Q ss_pred HHHHHHHHHhhHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCChhhhhhhhhhHHHHHHHHHHHHHh
Q 042849 826 ERRTEQLLVKSREEVIGWMHNLKGREAVLSQQIANLQRELNAAAFAVRSQGSVGVDPDVLMARDQNRDTLLQNLAAAVEN 905 (1019)
Q Consensus 826 d~rv~~lL~k~~~~~~~~~~~L~~~~~~l~~~i~~L~~~L~~~~~a~rs~~s~~~d~~~l~~~d~~r~~Llq~L~~~~~~ 905 (1019)
...+. .+ .. . ..+..+. .. .. . ...+...+
T Consensus 272 ~~~~~----~~-----------~~-~----~~l~~l~----~~----~~--~----~~~~~~~~---------------- 301 (624)
T 2gk6_A 272 HNQIR----NM-----------DS-M----PELQKLQ----QL----KD--E----TGELSSAD---------------- 301 (624)
T ss_dssp HHHHT----SC-----------SS-C----HHHHHHH----TT----CC----------CCHHH----------------
T ss_pred HHHHH----hc-----------cc-h----HHHHHHH----HH----HH--h----hcccCHHH----------------
Confidence 22111 00 00 0 0000000 00 00 0 00000000
Q ss_pred HHHHHHHHhhhhhhccccCCCCCchhHHHHHHHHHHHhccCcEEEEecccchhHHHhhhcCCCCEEEEcCCCCCCccccc
Q 042849 906 RDKVLVEMSRFHILEGRFRPGSNFNLEEARASLEASFANEAEIVFTTVSSSGRKLFSRLTHGFDMVVIDEAAQASEVGVL 985 (1019)
Q Consensus 906 r~k~L~elsrl~~l~~r~r~~~~~~l~~~r~~l~~~iL~eA~IV~sTlSssg~~ll~~l~~~FDvVIIDEAAQa~E~stL 985 (1019)
. ..++..++.+...+++.++|||||++++++..+.. ..||+||||||+|+.|++++
T Consensus 302 -~---------------------~~~~~~~~~~~~~~l~~~~vI~~T~~~~~~~~l~~--~~fd~viIDEAsQ~~e~~~l 357 (624)
T 2gk6_A 302 -E---------------------KRYRALKRTAERELLMNADVICCTCVGAGDPRLAK--MQFRSILIDESTQATEPECM 357 (624)
T ss_dssp -H---------------------HHHHHHHHHHHHHHHHTCSEEEEETGGGGCGGGTT--CCCSEEEETTGGGSCHHHHH
T ss_pred -H---------------------HHHHHHHHHHHHHHHhcCCEEEEcChhhcchhhhc--CCCCEEEEecccccCcHHHH
Confidence 0 00112233445678899999999999998765543 48999999999999999999
Q ss_pred cccccCCCeEEEecCCCCCCCcccCccccccCC
Q 042849 986 PPLSLGAARCVLGGGSSAAPCNSYQQGSRHLDV 1018 (1019)
Q Consensus 986 IPL~~g~kr~ILVGDpkQLPPtV~S~~Ak~lg~ 1018 (1019)
+||..+++++||||||+||||+|.+..+...|+
T Consensus 358 i~l~~~~~~~ilvGD~~QL~p~v~~~~~~~~gl 390 (624)
T 2gk6_A 358 VPVVLGAKQLILVGDHCQLGPVVMCKKAAKAGL 390 (624)
T ss_dssp HHHTTTBSEEEEEECTTSCCCCCSCHHHHHHTT
T ss_pred HHHHhcCCeEEEecChhccCCeeecHHHHHcCC
Confidence 999888999999999999999999988777664
No 3
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=100.00 E-value=2.4e-34 Score=354.35 Aligned_cols=387 Identities=20% Similarity=0.270 Sum_probs=231.0
Q ss_pred cccccccCcccCCHHHHHHhhhHHHHHHHHHHHHHhHHHhhccCCCCceeEEEEEEeeeccCCeEEEEEc-ccCccccCC
Q 042849 429 ESELQCVPGRFESVEEYVRVFEPLLFEECRAQLYSTWEELTETGSRDTHVMVRIRNIERRERGWYDVIVL-PVNECKWSF 507 (1019)
Q Consensus 429 ~~~lk~IP~tF~S~~eY~~sFePLLLEE~rAqL~ss~ee~~~~~sr~~~~~v~I~sve~~~~~fydV~v~-~~~~~~~~~ 507 (1019)
..++..||++|.|+.+|.++|.|||..|.+++.. +.+.... .. +.+. ......+.+...+. +..+....+
T Consensus 172 ~~~~~~v~~~y~~~~~Y~~~~~~l~~lE~~~~~~--~~e~~~~----~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~l 242 (800)
T 2wjy_A 172 DEEPQHVLLRYEDAYQYQNIFGPLVKLEADYDKK--LKESQTQ----DN--ITVR-WDLGLNKKRIAYFTLPKTDSDMRL 242 (800)
T ss_dssp --CCCCCCSCCSCHHHHHHHHHHHHHHHHHHHHH--HHHHTCE----EE--ECCE-EEECTTCCEEEEECCCBCCC--CC
T ss_pred cccccccccccCCHHHHHHHHHHHHHHHHHhhhh--hhhhhhc----cc--eEEE-EEecCCCeeEEEEEeccccCCCCC
Confidence 5678999999999999999999999999987754 2232111 11 1111 11112233333332 223334578
Q ss_pred CCCCEEEEecCCCCCCCCcCCCCccccccccccccceEeeeeeeccccCCCCCCceEEEEEecccCCCCCCCCchhHHHh
Q 042849 508 KEGDVAVLSTPRPGSVRGKRNHSLAAEDDEEAEVSGRVAGTVRRHFPVDARDPPGAILHFYVGDSYDPSSSMDDDDHILR 587 (1019)
Q Consensus 508 ~egDLVLLS~~kP~~~~~~~~~~~~~~d~~~~~~~g~v~g~v~~~~~v~~~~~~~~~vr~~v~~s~d~~~k~~~~~~~l~ 587 (1019)
..||+|.|+...+.. ... ...|.|.+... .....+.+.+ .......
T Consensus 243 ~~GD~v~l~~~~~~~--------------~~~----~~~g~V~~v~~---~~~~~v~l~~--~~~~~~p----------- 288 (800)
T 2wjy_A 243 MQGDEICLRYKGDLA--------------PLW----KGIGHVIKVPD---NYGDEIAIEL--RSSVGAP----------- 288 (800)
T ss_dssp CTTCEEEEEECSSSS--------------CCE----EEEEEEEECSB---TTBSCEEEEE--SCCTTCC-----------
T ss_pred CCCCEEEEEECCCCC--------------CCc----eeEEEEEEEcC---CCCCEEEEEE--ccCCCCc-----------
Confidence 999999999654321 011 12344433211 0111233333 1110000
Q ss_pred hcCCCceEEEEEecChhhHHHHHHHHhhcccCC----hHHHHhhcCCCCCCCCCcCCCCCCCCcccchhhHhhhccCCCh
Q 042849 588 KLQPKGIWYLTVLGSLATTQREYVALHAFCRLN----SQMQTAILKPSPEHFPKYEHQTPTMPECFTQNFIDHLHRTFNG 663 (1019)
Q Consensus 588 ~L~~~s~w~l~kL~nLtT~~RE~~AL~~l~~~~----~~l~~~IL~ps~~~~~~~~~~~~~~~~~~~~~l~~~L~~~LNe 663 (1019)
......+.+.++.+.+|+.|++.||+.+.... ..+...++....... ... ..++..+ .......||+
T Consensus 289 -~~~~~~~~v~~~~~~~~~~r~~~aL~~~~~~e~~~~~~l~~~ll~~~~~~~-~~~---~~l~~~~----~~~~~~~Ln~ 359 (800)
T 2wjy_A 289 -VEVTHNFQVDFVWKSTSFDRMQSALKTFAVDETSVSGYIYHKLLGHEVEDV-IIK---CQLPKRF----TAQGLPDLNH 359 (800)
T ss_dssp -TTCCSCEEEEECCCCHHHHHHHHHHHHHHHCTTSBCHHHHHHHTTCCCCCC-CCC---CCCCSCC----SCTTSCCCCH
T ss_pred -cccCCCceEEEeecCChHHHHHHHHHHHHHhhcchhHHHHHHhcCCCCCch-hhc---ccCcccc----ccccccCCCH
Confidence 01123477888999999999999999875432 123444554321110 000 0111111 1112357999
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCCCCCCeeEEeCCCCCChhHHHHHHHHHHHHHhhhhhhhhhhhhcCcccccCCCCCCCC
Q 042849 664 PQLAAIQWAAIHTAAGTSSGMTKSPWPFTLVQGPPGTGKTHTVWGMLNVIHLVQYQHYYNSLLKKLAPESYKQPNESNSD 743 (1019)
Q Consensus 664 SQ~eAI~~Al~~~~~g~s~~~~k~~~~fsLIQGPPGTGKTkTI~~LL~~Lll~~~q~~~~sLlk~l~~~~~kq~~~~~s~ 743 (1019)
+|.+||..++ ..++.|||||||||||+|++.++..++ +
T Consensus 360 ~Q~~Av~~~l--------------~~~~~lI~GppGTGKT~ti~~~i~~l~------------~---------------- 397 (800)
T 2wjy_A 360 SQVYAVKTVL--------------QRPLSLIQGPPGTGKTVTSATIVYHLA------------R---------------- 397 (800)
T ss_dssp HHHHHHHHHH--------------TSSEEEEECCTTSCHHHHHHHHHHHHH------------T----------------
T ss_pred HHHHHHHHhc--------------cCCeEEEEcCCCCCHHHHHHHHHHHHH------------H----------------
Confidence 9999999876 247899999999999999999886431 0
Q ss_pred cccCCchhHHhhhhhhhhhccCCCCCCCCcEEEEecCchhHHHHHHHHHhcCcccCcccccCCcEEEEcCchhhh---HH
Q 042849 744 NVSMGSIDEVLQNMDQNLLRTLPKLCPKPRMLVCAPSNAATDELLTRVLDRGFIDGEMKVYRPDVARVGVDSQTR---AA 820 (1019)
Q Consensus 744 ~~~~g~~~e~~~~~~~n~~r~~~k~~~k~RILVCAPSNaAVDEll~RLl~~Gi~d~~g~~y~p~VVRiG~~s~~~---~v 820 (1019)
..+.+||+|||||.|+|++.+||.+.|+ +++|+|...+.. .+
T Consensus 398 -------------------------~~~~~ilv~a~tn~A~~~l~~~l~~~g~----------~vvRlg~~~r~~i~~~~ 442 (800)
T 2wjy_A 398 -------------------------QGNGPVLVCAPSNIAVDQLTEKIHQTGL----------KVVRLCAKSREAIDSPV 442 (800)
T ss_dssp -------------------------TCSSCEEEEESSHHHHHHHHHHHHTTTC----------CEEECCCGGGGGCCCTT
T ss_pred -------------------------cCCCcEEEEcCcHHHHHHHHHHHHHhCc----------ceEeecccchhhhcchh
Confidence 0257999999999999999999976543 689999875421 11
Q ss_pred hhhcHHHHHHHHHHhhHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCChhhhhhhhhhHHHHHHHHH
Q 042849 821 QAVSVERRTEQLLVKSREEVIGWMHNLKGREAVLSQQIANLQRELNAAAFAVRSQGSVGVDPDVLMARDQNRDTLLQNLA 900 (1019)
Q Consensus 821 ~~vsLd~rv~~lL~k~~~~~~~~~~~L~~~~~~l~~~i~~L~~~L~~~~~a~rs~~s~~~d~~~l~~~d~~r~~Llq~L~ 900 (1019)
...++...+.. ... . ..+..+. ... ...+. ... .+.
T Consensus 443 ~~~tlh~~~~~------------~~~----~----~~l~~l~----~~~---~~~~~--~~~-----~~~---------- 478 (800)
T 2wjy_A 443 SFLALHNQIRN------------MDS----M----PELQKLQ----QLK---DETGE--LSS-----ADE---------- 478 (800)
T ss_dssp GGGBHHHHHHT------------CTT----C----HHHHHHH----HHH---TTTSC--CCH-----HHH----------
T ss_pred hhhhHHHHHHc------------Ccc----H----HHHHHHH----HHH---Hhhcc--cCh-----HHH----------
Confidence 22233321110 000 0 0000000 000 00000 000 000
Q ss_pred HHHHhHHHHHHHHhhhhhhccccCCCCCchhHHHHHHHHHHHhccCcEEEEecccchhHHHhhhcCCCCEEEEcCCCCCC
Q 042849 901 AAVENRDKVLVEMSRFHILEGRFRPGSNFNLEEARASLEASFANEAEIVFTTVSSSGRKLFSRLTHGFDMVVIDEAAQAS 980 (1019)
Q Consensus 901 ~~~~~r~k~L~elsrl~~l~~r~r~~~~~~l~~~r~~l~~~iL~eA~IV~sTlSssg~~ll~~l~~~FDvVIIDEAAQa~ 980 (1019)
..++..++.+...+++.++|||||++++++..+.. ..||+||||||+|+.
T Consensus 479 ----------------------------~~~~~~~~~~~~~~l~~a~VI~~T~~~~~~~~l~~--~~fd~viIDEAsQ~~ 528 (800)
T 2wjy_A 479 ----------------------------KRYRALKRTAERELLMNADVICCTCVGAGDPRLAK--MQFRSILIDESTQAT 528 (800)
T ss_dssp ----------------------------HHHHHHHHHHHHHHHHHCSEEEEETGGGGCTTTTT--CCCSEEEETTGGGSC
T ss_pred ----------------------------HHHHHHHHHHHHhhhccCCEEEEchhhhCChhhhc--CCCCEEEEECCCCCC
Confidence 00112233445678899999999999988655443 489999999999999
Q ss_pred ccccccccccCCCeEEEecCCCCCCCcccCccccccCC
Q 042849 981 EVGVLPPLSLGAARCVLGGGSSAAPCNSYQQGSRHLDV 1018 (1019)
Q Consensus 981 E~stLIPL~~g~kr~ILVGDpkQLPPtV~S~~Ak~lg~ 1018 (1019)
|+++|+||..+++++||||||+||||+|++..+...|+
T Consensus 529 e~~~li~l~~~~~~~ilvGD~~QLpPvv~s~~a~~~gl 566 (800)
T 2wjy_A 529 EPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKAGL 566 (800)
T ss_dssp HHHHHHHHTTTBSEEEEEECTTSCCCCCCCHHHHHTTT
T ss_pred cHHHHHHHHhcCCeEEEecccccCCCeecchhhhhcCc
Confidence 99999999888999999999999999999988877765
No 4
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.9e-34 Score=352.68 Aligned_cols=387 Identities=23% Similarity=0.278 Sum_probs=226.5
Q ss_pred ccccccccCcccCCHHHHHHhhhHHHHHHHHHHHHHhHHHhhccCCCCceeEEEEEEeeeccCCeEEEEEc--ccCcccc
Q 042849 428 EESELQCVPGRFESVEEYVRVFEPLLFEECRAQLYSTWEELTETGSRDTHVMVRIRNIERRERGWYDVIVL--PVNECKW 505 (1019)
Q Consensus 428 ~~~~lk~IP~tF~S~~eY~~sFePLLLEE~rAqL~ss~ee~~~~~sr~~~~~v~I~sve~~~~~fydV~v~--~~~~~~~ 505 (1019)
...++..||.+|.|+.+|.++|.|||..|.+++.. +.+.... ..+.+. . .....+.+.+.+. ...+...
T Consensus 173 ~~~~~~~v~~~y~~~~~Y~~~~~~ll~lE~~~~~~--~~~~~~~----~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~ 243 (802)
T 2xzl_A 173 EQEAIPPLLLRYQDAYEYQRSYGPLIKLEADYDKQ--LKESQAL----EHISVS--W-SLALNNRHLASFTLSTFESNEL 243 (802)
T ss_dssp -----CCCCSSCSSHHHHHHHHHHHHHHHHHHHHH--HHCCC------CCBCEE--E-EECTTSCEEEEEC---------
T ss_pred ccccccccccccCCHHHHHHHHHHHHHHHHHhhhh--hhhHhhc----cCceEe--e-eccCCCeEEEEEEecccccCCC
Confidence 36788999999999999999999999999987654 2221111 111111 1 1112333333332 1123345
Q ss_pred CCCCCCEEEEecCCCCCCCCcCCCCccccccccccccceEeeeeeeccccCCCCCCceEEEEEecccCCCCCCCCchhHH
Q 042849 506 SFKEGDVAVLSTPRPGSVRGKRNHSLAAEDDEEAEVSGRVAGTVRRHFPVDARDPPGAILHFYVGDSYDPSSSMDDDDHI 585 (1019)
Q Consensus 506 ~~~egDLVLLS~~kP~~~~~~~~~~~~~~d~~~~~~~g~v~g~v~~~~~v~~~~~~~~~vr~~v~~s~d~~~k~~~~~~~ 585 (1019)
.+..||.|+|+...|... .. ...|.|.+.. ......+.+.+. ...+. .
T Consensus 244 ~~~~GD~v~l~~~~~~~~--------------~~----~~~g~V~~v~---~~~~~~v~v~~~--~~~~~---~------ 291 (802)
T 2xzl_A 244 KVAIGDEMILWYSGMQHP--------------DW----EGRGYIVRLP---NSFQDTFTLELK--PSKTP---P------ 291 (802)
T ss_dssp CCCTTCEEEEEECSSSSS--------------CE----EEEEEEEECC---C---CCEEEEEC--CCSSC---C------
T ss_pred CCCCCCEEEEEECCCCCC--------------ce----eEEEEEEEEC---CCCCCEEEEEEe--CCCCC---C------
Confidence 789999999996544210 01 1234443321 011112344442 11100 0
Q ss_pred HhhcCCCceEEEEEecChhhHHHHHHHHhhcccCC----hHHHHhhcCCCCCCCCCcCCCCCCCCcccchhhHhhhccCC
Q 042849 586 LRKLQPKGIWYLTVLGSLATTQREYVALHAFCRLN----SQMQTAILKPSPEHFPKYEHQTPTMPECFTQNFIDHLHRTF 661 (1019)
Q Consensus 586 l~~L~~~s~w~l~kL~nLtT~~RE~~AL~~l~~~~----~~l~~~IL~ps~~~~~~~~~~~~~~~~~~~~~l~~~L~~~L 661 (1019)
. ......+.+.++.+.+|+.|++.||+.+.... ..+...++....... .+. ..+|..+ .......|
T Consensus 292 -p-~~~~~~~~v~~~~~~~~~~r~~~AL~~~~~~~~~~~~~l~~~ll~~~~~~~-~~~---~~lp~~~----~~~~~~~L 361 (802)
T 2xzl_A 292 -P-THLTTGFTAEFIWKGTSYDRMQDALKKFAIDKKSISGYLYYKILGHQVVDI-SFD---VPLPKEF----SIPNFAQL 361 (802)
T ss_dssp -C-TTCCSSEEEEECCCCHHHHHHHHHHHHHHHCTTSBCHHHHHHHHTCCCCCC-CCC---CCCCSCC----SCTTSCCC
T ss_pred -c-cccCCCeEEEEEecCchHHHHHHHHHHHHhccccchhHHHHHhcCCccccc-ccc---ccCcccc----cccccccC
Confidence 0 00123477889999999999999999885322 124555665432111 010 0111111 01112579
Q ss_pred ChHHHHHHHHHHHHhhcCCCCCCCCCCCCeeEEeCCCCCChhHHHHHHHHHHHHHhhhhhhhhhhhhcCcccccCCCCCC
Q 042849 662 NGPQLAAIQWAAIHTAAGTSSGMTKSPWPFTLVQGPPGTGKTHTVWGMLNVIHLVQYQHYYNSLLKKLAPESYKQPNESN 741 (1019)
Q Consensus 662 NeSQ~eAI~~Al~~~~~g~s~~~~k~~~~fsLIQGPPGTGKTkTI~~LL~~Lll~~~q~~~~sLlk~l~~~~~kq~~~~~ 741 (1019)
|++|.+||..++ ..++.|||||||||||+|++.++..++..
T Consensus 362 n~~Q~~Av~~~l--------------~~~~~lI~GppGTGKT~~i~~~i~~l~~~------------------------- 402 (802)
T 2xzl_A 362 NSSQSNAVSHVL--------------QRPLSLIQGPPGTGKTVTSATIVYHLSKI------------------------- 402 (802)
T ss_dssp CHHHHHHHHHHT--------------TCSEEEEECSTTSSHHHHHHHHHHHHHHH-------------------------
T ss_pred CHHHHHHHHHHh--------------cCCCEEEECCCCCCHHHHHHHHHHHHHhC-------------------------
Confidence 999999999775 24789999999999999999988643110
Q ss_pred CCcccCCchhHHhhhhhhhhhccCCCCCCCCcEEEEecCchhHHHHHHHHHhcCcccCcccccCCcEEEEcCchhhh---
Q 042849 742 SDNVSMGSIDEVLQNMDQNLLRTLPKLCPKPRMLVCAPSNAATDELLTRVLDRGFIDGEMKVYRPDVARVGVDSQTR--- 818 (1019)
Q Consensus 742 s~~~~~g~~~e~~~~~~~n~~r~~~k~~~k~RILVCAPSNaAVDEll~RLl~~Gi~d~~g~~y~p~VVRiG~~s~~~--- 818 (1019)
.+.+||||||||.|+|++++||.+.|+ +++|+|......
T Consensus 403 ----------------------------~~~~ILv~a~tn~A~d~l~~rL~~~g~----------~ilR~g~~~r~~i~~ 444 (802)
T 2xzl_A 403 ----------------------------HKDRILVCAPSNVAVDHLAAKLRDLGL----------KVVRLTAKSREDVES 444 (802)
T ss_dssp ----------------------------HCCCEEEEESSHHHHHHHHHHHHHTTC----------CEEECCCGGGTTSCC
T ss_pred ----------------------------CCCeEEEEcCcHHHHHHHHHHHHhhCc----------cEEeecccchhhhcc
Confidence 157999999999999999999986543 789999865321
Q ss_pred HHhhhcHHHHHHHHHHhhHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCChhhhhhhhhhHHHHHHH
Q 042849 819 AAQAVSVERRTEQLLVKSREEVIGWMHNLKGREAVLSQQIANLQRELNAAAFAVRSQGSVGVDPDVLMARDQNRDTLLQN 898 (1019)
Q Consensus 819 ~v~~vsLd~rv~~lL~k~~~~~~~~~~~L~~~~~~l~~~i~~L~~~L~~~~~a~rs~~s~~~d~~~l~~~d~~r~~Llq~ 898 (1019)
.+...++...+.. . ... .+ ..+..++.+. +. .... + . .
T Consensus 445 ~~~~~tl~~~~~~----~----------~~~---~l-~~l~~~~~~~----------~~--ls~~-----~--~----~- 482 (802)
T 2xzl_A 445 SVSNLALHNLVGR----G----------AKG---EL-KNLLKLKDEV----------GE--LSAS-----D--T----K- 482 (802)
T ss_dssp TTGGGBHHHHHHT----T----------CCT---HH-HHHHHHHHHH----------SC--CCHH-----H--H----H-
T ss_pred hhhhhhHHHHHHh----h----------cHH---HH-HHHHHHHHhh----------cc--CCHH-----H--H----H-
Confidence 1223334322110 0 000 00 0000000000 00 0000 0 0 0
Q ss_pred HHHHHHhHHHHHHHHhhhhhhccccCCCCCchhHHHHHHHHHHHhccCcEEEEecccchhHHHhhhcCCCCEEEEcCCCC
Q 042849 899 LAAAVENRDKVLVEMSRFHILEGRFRPGSNFNLEEARASLEASFANEAEIVFTTVSSSGRKLFSRLTHGFDMVVIDEAAQ 978 (1019)
Q Consensus 899 L~~~~~~r~k~L~elsrl~~l~~r~r~~~~~~l~~~r~~l~~~iL~eA~IV~sTlSssg~~ll~~l~~~FDvVIIDEAAQ 978 (1019)
.+....+.....+++.++||++|+++++...+. ..||+||||||+|
T Consensus 483 -------------------------------~~~~~~~~~~~~~l~~a~VI~~T~~~~~~~~L~---~~fd~viIDEA~q 528 (802)
T 2xzl_A 483 -------------------------------RFVKLVRKTEAEILNKADVVCCTCVGAGDKRLD---TKFRTVLIDESTQ 528 (802)
T ss_dssp -------------------------------HHHHHHHHHHHHHHHTCSEEEEETTGGGCTTCC---SCCSEEEETTGGG
T ss_pred -------------------------------HHHHHHHHHHHHHhccCCEEEechhhcChHHHh---ccCCEEEEECccc
Confidence 001112234556789999999999998854432 3899999999999
Q ss_pred CCccccccccccCCCeEEEecCCCCCCCcccCccccccCC
Q 042849 979 ASEVGVLPPLSLGAARCVLGGGSSAAPCNSYQQGSRHLDV 1018 (1019)
Q Consensus 979 a~E~stLIPL~~g~kr~ILVGDpkQLPPtV~S~~Ak~lg~ 1018 (1019)
+.|++.|+||..+++++||||||+||||+|.+..|.+.|+
T Consensus 529 ~~e~~~li~l~~~~~~lilvGD~~QL~pvv~s~~a~~~gl 568 (802)
T 2xzl_A 529 ASEPECLIPIVKGAKQVILVGDHQQLGPVILERKAADAGL 568 (802)
T ss_dssp SCHHHHHHHHTTTBSEEEEEECTTSCCCCCCCHHHHHTTT
T ss_pred cchHHHHHHHHhCCCEEEEEeCccccCCeechhhhhhcCC
Confidence 9999999999888999999999999999999988877664
No 5
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=99.46 E-value=1.4e-13 Score=164.31 Aligned_cols=66 Identities=21% Similarity=0.328 Sum_probs=54.7
Q ss_pred ccCCChHHHHHHHHHHHHhhcCCCCCCCCCCCCeeEEeCCCCCChhHHHHHHHHHHHHHhhhhhhhhhhhhcCcccccCC
Q 042849 658 HRTFNGPQLAAIQWAAIHTAAGTSSGMTKSPWPFTLVQGPPGTGKTHTVWGMLNVIHLVQYQHYYNSLLKKLAPESYKQP 737 (1019)
Q Consensus 658 ~~~LNeSQ~eAI~~Al~~~~~g~s~~~~k~~~~fsLIQGPPGTGKTkTI~~LL~~Lll~~~q~~~~sLlk~l~~~~~kq~ 737 (1019)
...||+.|.+||..++ ..++.+|+||||||||+|+..++..+.
T Consensus 187 ~~~L~~~Q~~Av~~~~--------------~~~~~~I~G~pGTGKTt~i~~l~~~l~----------------------- 229 (574)
T 3e1s_A 187 RKGLSEEQASVLDQLA--------------GHRLVVLTGGPGTGKSTTTKAVADLAE----------------------- 229 (574)
T ss_dssp TTTCCHHHHHHHHHHT--------------TCSEEEEECCTTSCHHHHHHHHHHHHH-----------------------
T ss_pred cCCCCHHHHHHHHHHH--------------hCCEEEEEcCCCCCHHHHHHHHHHHHH-----------------------
Confidence 4579999999999765 247899999999999999998886431
Q ss_pred CCCCCCcccCCchhHHhhhhhhhhhccCCCCCCCCcEEEEecCchhHHHHHHHH
Q 042849 738 NESNSDNVSMGSIDEVLQNMDQNLLRTLPKLCPKPRMLVCAPSNAATDELLTRV 791 (1019)
Q Consensus 738 ~~~~s~~~~~g~~~e~~~~~~~n~~r~~~k~~~k~RILVCAPSNaAVDEll~RL 791 (1019)
..+.+|++||||+.|++++.+++
T Consensus 230 -------------------------------~~g~~Vl~~ApT~~Aa~~L~e~~ 252 (574)
T 3e1s_A 230 -------------------------------SLGLEVGLCAPTGKAARRLGEVT 252 (574)
T ss_dssp -------------------------------HTTCCEEEEESSHHHHHHHHHHH
T ss_pred -------------------------------hcCCeEEEecCcHHHHHHhHhhh
Confidence 02579999999999999988775
No 6
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=99.43 E-value=2.2e-13 Score=163.79 Aligned_cols=44 Identities=20% Similarity=0.172 Sum_probs=34.7
Q ss_pred CCCEEEEcCCCCCCcc--ccccccccCCCeEEEecCCCCCCCcccC
Q 042849 967 GFDMVVIDEAAQASEV--GVLPPLSLGAARCVLGGGSSAAPCNSYQ 1010 (1019)
Q Consensus 967 ~FDvVIIDEAAQa~E~--stLIPL~~g~kr~ILVGDpkQLPPtV~S 1010 (1019)
.+|+||||||+++.+. ..|+.......++|||||+.||||....
T Consensus 262 ~~d~lIIDEAsml~~~~~~~Ll~~l~~~~~liLvGD~~QL~~V~~G 307 (608)
T 1w36_D 262 HLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAG 307 (608)
T ss_dssp SCSEEEECSGGGCBHHHHHHHHHTCCTTCEEEEEECTTSGGGTSTT
T ss_pred CCCEEEEechhhCCHHHHHHHHHhCCCCCEEEEEcchhhcCCCCCC
Confidence 7999999999988764 3344433456799999999999998643
No 7
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=99.27 E-value=8.5e-12 Score=144.78 Aligned_cols=71 Identities=18% Similarity=0.200 Sum_probs=54.5
Q ss_pred cCCChHHHHHHHHHHHHhhcCCCCCCCCCCCCeeEEeCCCCCChhHHHHHHHHHHHHHhhhhhhhhhhhhcCcccccCCC
Q 042849 659 RTFNGPQLAAIQWAAIHTAAGTSSGMTKSPWPFTLVQGPPGTGKTHTVWGMLNVIHLVQYQHYYNSLLKKLAPESYKQPN 738 (1019)
Q Consensus 659 ~~LNeSQ~eAI~~Al~~~~~g~s~~~~k~~~~fsLIQGPPGTGKTkTI~~LL~~Lll~~~q~~~~sLlk~l~~~~~kq~~ 738 (1019)
..||+.|.+|+..++.... ...++.||+||||||||+++..++..|..
T Consensus 24 ~~Ln~~Q~~av~~~~~~i~---------~~~~~~li~G~aGTGKT~ll~~~~~~l~~----------------------- 71 (459)
T 3upu_A 24 DDLTEGQKNAFNIVMKAIK---------EKKHHVTINGPAGTGATTLTKFIIEALIS----------------------- 71 (459)
T ss_dssp SCCCHHHHHHHHHHHHHHH---------SSSCEEEEECCTTSCHHHHHHHHHHHHHH-----------------------
T ss_pred ccCCHHHHHHHHHHHHHHh---------cCCCEEEEEeCCCCCHHHHHHHHHHHHHh-----------------------
Confidence 4799999999997653211 12358999999999999999888764310
Q ss_pred CCCCCcccCCchhHHhhhhhhhhhccCCCCCCCCcEEEEecCchhHHHHHHHH
Q 042849 739 ESNSDNVSMGSIDEVLQNMDQNLLRTLPKLCPKPRMLVCAPSNAATDELLTRV 791 (1019)
Q Consensus 739 ~~~s~~~~~g~~~e~~~~~~~n~~r~~~k~~~k~RILVCAPSNaAVDEll~RL 791 (1019)
....+|++|||||.|++++..++
T Consensus 72 ------------------------------~~~~~il~~a~T~~Aa~~l~~~~ 94 (459)
T 3upu_A 72 ------------------------------TGETGIILAAPTHAAKKILSKLS 94 (459)
T ss_dssp ------------------------------TTCCCEEEEESSHHHHHHHHHHH
T ss_pred ------------------------------cCCceEEEecCcHHHHHHHHhhh
Confidence 01248999999999999999887
No 8
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=99.17 E-value=1.6e-10 Score=138.46 Aligned_cols=70 Identities=21% Similarity=0.263 Sum_probs=53.9
Q ss_pred ccCCChHHHHHHHHHHHHhhcCCCCCCCCCCCCeeEEeCCCCCChhHHHHHHHHHHHHHhhhhhhhhhhhhcCcccccCC
Q 042849 658 HRTFNGPQLAAIQWAAIHTAAGTSSGMTKSPWPFTLVQGPPGTGKTHTVWGMLNVIHLVQYQHYYNSLLKKLAPESYKQP 737 (1019)
Q Consensus 658 ~~~LNeSQ~eAI~~Al~~~~~g~s~~~~k~~~~fsLIQGPPGTGKTkTI~~LL~~Lll~~~q~~~~sLlk~l~~~~~kq~ 737 (1019)
...||+.|.+||.. ..+..||+||||||||+|++..+.-++ ..
T Consensus 7 ~~~Ln~~Q~~av~~----------------~~~~~lV~a~aGsGKT~~l~~ri~~l~------------~~--------- 49 (647)
T 3lfu_A 7 LDSLNDKQREAVAA----------------PRSNLLVLAGAGSGKTRVLVHRIAWLM------------SV--------- 49 (647)
T ss_dssp HTTCCHHHHHHHTC----------------CSSCEEEEECTTSCHHHHHHHHHHHHH------------HT---------
T ss_pred hhcCCHHHHHHHhC----------------CCCCEEEEECCCCCHHHHHHHHHHHHH------------Hh---------
Confidence 46899999999961 124579999999999999988765321 10
Q ss_pred CCCCCCcccCCchhHHhhhhhhhhhccCCCCCCCCcEEEEecCchhHHHHHHHHHh
Q 042849 738 NESNSDNVSMGSIDEVLQNMDQNLLRTLPKLCPKPRMLVCAPSNAATDELLTRVLD 793 (1019)
Q Consensus 738 ~~~~s~~~~~g~~~e~~~~~~~n~~r~~~k~~~k~RILVCAPSNaAVDEll~RLl~ 793 (1019)
...+..+||+|++||.|++++..||.+
T Consensus 50 -----------------------------~~~~~~~iL~ltft~~aa~e~~~rl~~ 76 (647)
T 3lfu_A 50 -----------------------------ENCSPYSIMAVTFTNKAAAEMRHRIGQ 76 (647)
T ss_dssp -----------------------------SCCCGGGEEEEESSHHHHHHHHHHHHH
T ss_pred -----------------------------CCCChhhEEEEeccHHHHHHHHHHHHH
Confidence 001246999999999999999999965
No 9
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=99.09 E-value=8.8e-11 Score=135.72 Aligned_cols=43 Identities=19% Similarity=0.128 Sum_probs=32.9
Q ss_pred CCCEEEEcCCCCCCcccc--ccccccCCCeEEEecCCCCCCCcccC
Q 042849 967 GFDMVVIDEAAQASEVGV--LPPLSLGAARCVLGGGSSAAPCNSYQ 1010 (1019)
Q Consensus 967 ~FDvVIIDEAAQa~E~st--LIPL~~g~kr~ILVGDpkQLPPtV~S 1010 (1019)
.+|+||||||+++.-... ++.+ ..++++||+|||+|||+.-..
T Consensus 234 ~~d~liiDE~sm~~~~~l~~l~~~-~~~~~vilvGD~~Qlp~v~~~ 278 (446)
T 3vkw_A 234 QFKRLFIDEGLMLHTGCVNFLVEM-SLCDIAYVYGDTQQIPYINRV 278 (446)
T ss_dssp CCSEEEEETGGGSCHHHHHHHHHH-TTCSEEEEEECTTSCCCCCCS
T ss_pred cCCEEEEeCcccCCHHHHHHHHHh-CCCCEEEEecCcccccCcccC
Confidence 589999999998753322 3333 356999999999999998543
No 10
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=98.65 E-value=5.3e-07 Score=109.23 Aligned_cols=68 Identities=21% Similarity=0.156 Sum_probs=52.0
Q ss_pred CCChHHHHHHHHHHHHhhcCCCCCCCCCCCCeeEEeCCCCCChhHHHHHHHHHHHHHhhhhhhhhhhhhcCcccccCCCC
Q 042849 660 TFNGPQLAAIQWAAIHTAAGTSSGMTKSPWPFTLVQGPPGTGKTHTVWGMLNVIHLVQYQHYYNSLLKKLAPESYKQPNE 739 (1019)
Q Consensus 660 ~LNeSQ~eAI~~Al~~~~~g~s~~~~k~~~~fsLIQGPPGTGKTkTI~~LL~~Lll~~~q~~~~sLlk~l~~~~~kq~~~ 739 (1019)
.||+.|.+||.. ..+-.||.|+||||||+|++.-+.-++. ..
T Consensus 2 ~L~~~Q~~av~~----------------~~~~~lV~AgaGSGKT~~l~~ri~~ll~-----------~~----------- 43 (673)
T 1uaa_A 2 RLNPGQQQAVEF----------------VTGPCLVLAGAGSGKTRVITNKIAHLIR-----------GC----------- 43 (673)
T ss_dssp CCCHHHHHHHHC----------------CSSEEEECCCTTSCHHHHHHHHHHHHHH-----------HH-----------
T ss_pred CCCHHHHHHHhC----------------CCCCEEEEeCCCCChHHHHHHHHHHHHH-----------hc-----------
Confidence 689999999972 1255799999999999999876642211 00
Q ss_pred CCCCcccCCchhHHhhhhhhhhhccCCCCCCCCcEEEEecCchhHHHHHHHHHh
Q 042849 740 SNSDNVSMGSIDEVLQNMDQNLLRTLPKLCPKPRMLVCAPSNAATDELLTRVLD 793 (1019)
Q Consensus 740 ~~s~~~~~g~~~e~~~~~~~n~~r~~~k~~~k~RILVCAPSNaAVDEll~RLl~ 793 (1019)
.....+||++++||.|.+|+-.||.+
T Consensus 44 ----------------------------~~~~~~IL~lTfT~~Aa~em~~Rl~~ 69 (673)
T 1uaa_A 44 ----------------------------GYQARHIAAVTFTNKAAREMKERVGQ 69 (673)
T ss_dssp ----------------------------CCCGGGEEEEESSHHHHHHHHHHHHH
T ss_pred ----------------------------CCCHHHeEEEeccHHHHHHHHHHHHH
Confidence 01246899999999999999999965
No 11
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=98.51 E-value=8.9e-07 Score=108.49 Aligned_cols=70 Identities=21% Similarity=0.181 Sum_probs=52.9
Q ss_pred ccCCChHHHHHHHHHHHHhhcCCCCCCCCCCCCeeEEeCCCCCChhHHHHHHHHHHHHHhhhhhhhhhhhhcCcccccCC
Q 042849 658 HRTFNGPQLAAIQWAAIHTAAGTSSGMTKSPWPFTLVQGPPGTGKTHTVWGMLNVIHLVQYQHYYNSLLKKLAPESYKQP 737 (1019)
Q Consensus 658 ~~~LNeSQ~eAI~~Al~~~~~g~s~~~~k~~~~fsLIQGPPGTGKTkTI~~LL~~Lll~~~q~~~~sLlk~l~~~~~kq~ 737 (1019)
...||+.|.+||.. +.+-.||.|+||||||+|+..-+.-++ ..
T Consensus 9 l~~Ln~~Q~~av~~----------------~~g~~lV~AgAGSGKT~vL~~ri~~ll------------~~--------- 51 (724)
T 1pjr_A 9 LAHLNKEQQEAVRT----------------TEGPLLIMAGAGSGKTRVLTHRIAYLM------------AE--------- 51 (724)
T ss_dssp HTTSCHHHHHHHHC----------------CSSCEEEEECTTSCHHHHHHHHHHHHH------------HT---------
T ss_pred HhhCCHHHHHHHhC----------------CCCCEEEEEcCCCCHHHHHHHHHHHHH------------Hh---------
Confidence 46899999999972 124479999999999999987664221 10
Q ss_pred CCCCCCcccCCchhHHhhhhhhhhhccCCCCCCCCcEEEEecCchhHHHHHHHHHh
Q 042849 738 NESNSDNVSMGSIDEVLQNMDQNLLRTLPKLCPKPRMLVCAPSNAATDELLTRVLD 793 (1019)
Q Consensus 738 ~~~~s~~~~~g~~~e~~~~~~~n~~r~~~k~~~k~RILVCAPSNaAVDEll~RLl~ 793 (1019)
......+||+++.||.|.+|+.+||.+
T Consensus 52 -----------------------------~~~~p~~IL~vTFTnkAA~Em~~Rl~~ 78 (724)
T 1pjr_A 52 -----------------------------KHVAPWNILAITFTNKAAREMRERVQS 78 (724)
T ss_dssp -----------------------------TCCCGGGEEEEESSHHHHHHHHHHHHH
T ss_pred -----------------------------cCCCHHHeEEEeccHHHHHHHHHHHHH
Confidence 001246899999999999999999865
No 12
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=98.19 E-value=1.1e-05 Score=85.40 Aligned_cols=64 Identities=20% Similarity=0.190 Sum_probs=48.9
Q ss_pred cCCChHHHHHHHHHHHHhhcCCCCCCCCCCCCeeEEeCCCCCChhHHHHHHHHHHHHHhhhhhhhhhhhhcCcccccCCC
Q 042849 659 RTFNGPQLAAIQWAAIHTAAGTSSGMTKSPWPFTLVQGPPGTGKTHTVWGMLNVIHLVQYQHYYNSLLKKLAPESYKQPN 738 (1019)
Q Consensus 659 ~~LNeSQ~eAI~~Al~~~~~g~s~~~~k~~~~fsLIQGPPGTGKTkTI~~LL~~Lll~~~q~~~~sLlk~l~~~~~kq~~ 738 (1019)
..+++.|.+|+...+. ..-.||.||+|+|||.+...++..
T Consensus 92 ~~l~~~Q~~ai~~~~~--------------~~~~ll~~~tG~GKT~~a~~~~~~-------------------------- 131 (237)
T 2fz4_A 92 ISLRDYQEKALERWLV--------------DKRGCIVLPTGSGKTHVAMAAINE-------------------------- 131 (237)
T ss_dssp CCCCHHHHHHHHHHTT--------------TSEEEEEESSSTTHHHHHHHHHHH--------------------------
T ss_pred CCcCHHHHHHHHHHHh--------------CCCEEEEeCCCCCHHHHHHHHHHH--------------------------
Confidence 4789999999986541 123899999999999876555420
Q ss_pred CCCCCcccCCchhHHhhhhhhhhhccCCCCCCCCcEEEEecCchhHHHHHHHHHh
Q 042849 739 ESNSDNVSMGSIDEVLQNMDQNLLRTLPKLCPKPRMLVCAPSNAATDELLTRVLD 793 (1019)
Q Consensus 739 ~~~s~~~~~g~~~e~~~~~~~n~~r~~~k~~~k~RILVCAPSNaAVDEll~RLl~ 793 (1019)
.+.++||++|+...++++..++.+
T Consensus 132 -------------------------------~~~~~liv~P~~~L~~q~~~~~~~ 155 (237)
T 2fz4_A 132 -------------------------------LSTPTLIVVPTLALAEQWKERLGI 155 (237)
T ss_dssp -------------------------------SCSCEEEEESSHHHHHHHHHHHGG
T ss_pred -------------------------------cCCCEEEEeCCHHHHHHHHHHHHh
Confidence 146899999999999998888753
No 13
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=98.11 E-value=9.8e-06 Score=82.42 Aligned_cols=39 Identities=21% Similarity=0.100 Sum_probs=30.2
Q ss_pred cCCChHHHHHHHHHHHHhhcCCCCCCCCCCCCeeEEeCCCCCChhHHHHHHHH
Q 042849 659 RTFNGPQLAAIQWAAIHTAAGTSSGMTKSPWPFTLVQGPPGTGKTHTVWGMLN 711 (1019)
Q Consensus 659 ~~LNeSQ~eAI~~Al~~~~~g~s~~~~k~~~~fsLIQGPPGTGKTkTI~~LL~ 711 (1019)
..+++.|.+||..++. ..-.||++|+|||||.+...++.
T Consensus 32 ~~l~~~Q~~~i~~~~~--------------~~~~li~~~tGsGKT~~~~~~~~ 70 (216)
T 3b6e_A 32 LQLRPYQMEVAQPALE--------------GKNIIICLPTGSGKTRVAVYIAK 70 (216)
T ss_dssp CCCCHHHHHHHHHHHT--------------TCCEEEECSCHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhc--------------CCCEEEEcCCCCCHHHHHHHHHH
Confidence 3689999999987651 12379999999999987765543
No 14
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=98.04 E-value=4.6e-05 Score=77.33 Aligned_cols=73 Identities=27% Similarity=0.224 Sum_probs=50.0
Q ss_pred cCCChHHHHHHHHHHHHhhcCCCCCCCCCCCCeeEEeCCCCCChhHHHHHHHHHHHHHhhhhhhhhhhhhcCcccccCCC
Q 042849 659 RTFNGPQLAAIQWAAIHTAAGTSSGMTKSPWPFTLVQGPPGTGKTHTVWGMLNVIHLVQYQHYYNSLLKKLAPESYKQPN 738 (1019)
Q Consensus 659 ~~LNeSQ~eAI~~Al~~~~~g~s~~~~k~~~~fsLIQGPPGTGKTkTI~~LL~~Lll~~~q~~~~sLlk~l~~~~~kq~~ 738 (1019)
..+++.|.+||..++. | .-.+|++|+|||||.+....+... +. ..
T Consensus 22 ~~~~~~Q~~~i~~~~~----~----------~~~li~~~TGsGKT~~~~~~~~~~-----------l~----~~------ 66 (207)
T 2gxq_A 22 TTPTPIQAAALPLALE----G----------KDLIGQARTGTGKTLAFALPIAER-----------LA----PS------ 66 (207)
T ss_dssp CSCCHHHHHHHHHHHT----T----------CCEEEECCTTSCHHHHHHHHHHHH-----------CC----CC------
T ss_pred CCCCHHHHHHHHHHcC----C----------CCEEEECCCCChHHHHHHHHHHHH-----------Hh----hc------
Confidence 4689999999987651 1 237999999999997643322100 00 00
Q ss_pred CCCCCcccCCchhHHhhhhhhhhhccCCCCCCCCcEEEEecCchhHHHHHHHHHh
Q 042849 739 ESNSDNVSMGSIDEVLQNMDQNLLRTLPKLCPKPRMLVCAPSNAATDELLTRVLD 793 (1019)
Q Consensus 739 ~~~s~~~~~g~~~e~~~~~~~n~~r~~~k~~~k~RILVCAPSNaAVDEll~RLl~ 793 (1019)
.....++++||.+|+.+.+.++..++.+
T Consensus 67 ---------------------------~~~~~~~~~lil~P~~~L~~q~~~~~~~ 94 (207)
T 2gxq_A 67 ---------------------------QERGRKPRALVLTPTRELALQVASELTA 94 (207)
T ss_dssp ---------------------------CCTTCCCSEEEECSSHHHHHHHHHHHHH
T ss_pred ---------------------------cccCCCCcEEEEECCHHHHHHHHHHHHH
Confidence 0012367999999999999999999864
No 15
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=97.98 E-value=6e-05 Score=77.67 Aligned_cols=69 Identities=26% Similarity=0.193 Sum_probs=49.0
Q ss_pred cCCChHHHHHHHHHHHHhhcCCCCCCCCCCCCeeEEeCCCCCChhHHHHH-HHHHHHHHhhhhhhhhhhhhcCcccccCC
Q 042849 659 RTFNGPQLAAIQWAAIHTAAGTSSGMTKSPWPFTLVQGPPGTGKTHTVWG-MLNVIHLVQYQHYYNSLLKKLAPESYKQP 737 (1019)
Q Consensus 659 ~~LNeSQ~eAI~~Al~~~~~g~s~~~~k~~~~fsLIQGPPGTGKTkTI~~-LL~~Lll~~~q~~~~sLlk~l~~~~~kq~ 737 (1019)
..+++.|.+||..++. | .-.||++|+|+|||.+... ++.. +.
T Consensus 35 ~~~~~~Q~~~i~~~~~----~----------~~~lv~~pTGsGKT~~~~~~~l~~------------l~----------- 77 (224)
T 1qde_A 35 EEPSAIQQRAIMPIIE----G----------HDVLAQAQSGTGKTGTFSIAALQR------------ID----------- 77 (224)
T ss_dssp CSCCHHHHHHHHHHHT----T----------CCEEEECCTTSSHHHHHHHHHHHH------------CC-----------
T ss_pred CCCcHHHHHHHHHHhc----C----------CCEEEECCCCCcHHHHHHHHHHHH------------Hh-----------
Confidence 4689999999987651 1 2279999999999966322 2210 00
Q ss_pred CCCCCCcccCCchhHHhhhhhhhhhccCCCCCCCCcEEEEecCchhHHHHHHHHHh
Q 042849 738 NESNSDNVSMGSIDEVLQNMDQNLLRTLPKLCPKPRMLVCAPSNAATDELLTRVLD 793 (1019)
Q Consensus 738 ~~~~s~~~~~g~~~e~~~~~~~n~~r~~~k~~~k~RILVCAPSNaAVDEll~RLl~ 793 (1019)
....+.++||++|+.+.+.++..++.+
T Consensus 78 -----------------------------~~~~~~~~lil~Pt~~L~~q~~~~~~~ 104 (224)
T 1qde_A 78 -----------------------------TSVKAPQALMLAPTRELALQIQKVVMA 104 (224)
T ss_dssp -----------------------------TTCCSCCEEEECSSHHHHHHHHHHHHH
T ss_pred -----------------------------ccCCCceEEEEECCHHHHHHHHHHHHH
Confidence 011367999999999999999988754
No 16
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=97.96 E-value=5.2e-05 Score=85.63 Aligned_cols=71 Identities=20% Similarity=0.300 Sum_probs=51.3
Q ss_pred hhhccCCChHHHHHHHHHHHHhhcCCCCCCCCCCCCeeEEeCCCCCChhHHHHHHHHHHHHHhhhhhhhhhhhhcCcccc
Q 042849 655 DHLHRTFNGPQLAAIQWAAIHTAAGTSSGMTKSPWPFTLVQGPPGTGKTHTVWGMLNVIHLVQYQHYYNSLLKKLAPESY 734 (1019)
Q Consensus 655 ~~L~~~LNeSQ~eAI~~Al~~~~~g~s~~~~k~~~~fsLIQGPPGTGKTkTI~~LL~~Lll~~~q~~~~sLlk~l~~~~~ 734 (1019)
..+...+++.|.+||..++. | .-.||++|.|+|||. +.++.++.. +
T Consensus 16 ~~~~~~~~~~Q~~~i~~i~~----~----------~~~lv~apTGsGKT~--~~l~~~~~~----------~-------- 61 (414)
T 3oiy_A 16 KKFGKDLTGYQRLWAKRIVQ----G----------KSFTMVAPTGVGKTT--FGMMTALWL----------A-------- 61 (414)
T ss_dssp HHHSSCCCHHHHHHHHHHTT----T----------CCEECCSCSSSSHHH--HHHHHHHHH----------H--------
T ss_pred HhcCCCCCHHHHHHHHHHhc----C----------CCEEEEeCCCCCHHH--HHHHHHHHH----------h--------
Confidence 33445788999999987651 1 237999999999997 233322110 0
Q ss_pred cCCCCCCCCcccCCchhHHhhhhhhhhhccCCCCCCCCcEEEEecCchhHHHHHHHHHh
Q 042849 735 KQPNESNSDNVSMGSIDEVLQNMDQNLLRTLPKLCPKPRMLVCAPSNAATDELLTRVLD 793 (1019)
Q Consensus 735 kq~~~~~s~~~~~g~~~e~~~~~~~n~~r~~~k~~~k~RILVCAPSNaAVDEll~RLl~ 793 (1019)
..++++||.+||.+.+.++..++.+
T Consensus 62 ----------------------------------~~~~~~lil~Pt~~L~~q~~~~~~~ 86 (414)
T 3oiy_A 62 ----------------------------------RKGKKSALVFPTVTLVKQTLERLQK 86 (414)
T ss_dssp ----------------------------------TTTCCEEEEESSHHHHHHHHHHHHH
T ss_pred ----------------------------------cCCCEEEEEECCHHHHHHHHHHHHH
Confidence 1267999999999999999999865
No 17
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=97.91 E-value=7.9e-05 Score=77.67 Aligned_cols=74 Identities=19% Similarity=0.110 Sum_probs=50.0
Q ss_pred cCCChHHHHHHHHHHHHhhcCCCCCCCCCCCCeeEEeCCCCCChhHHHHHHHHHHHHHhhhhhhhhhhhhcCcccccCCC
Q 042849 659 RTFNGPQLAAIQWAAIHTAAGTSSGMTKSPWPFTLVQGPPGTGKTHTVWGMLNVIHLVQYQHYYNSLLKKLAPESYKQPN 738 (1019)
Q Consensus 659 ~~LNeSQ~eAI~~Al~~~~~g~s~~~~k~~~~fsLIQGPPGTGKTkTI~~LL~~Lll~~~q~~~~sLlk~l~~~~~kq~~ 738 (1019)
..+++-|.+||..++. | .-.||++|+|+|||.+....+... +++. .
T Consensus 46 ~~~~~~Q~~~i~~~~~----~----------~~~li~a~TGsGKT~~~~~~~l~~-----------l~~~-------~-- 91 (236)
T 2pl3_A 46 RLVTEIQKQTIGLALQ----G----------KDVLGAAKTGSGKTLAFLVPVLEA-----------LYRL-------Q-- 91 (236)
T ss_dssp CBCCHHHHHHHHHHHT----T----------CCEEEECCTTSCHHHHHHHHHHHH-----------HHHT-------T--
T ss_pred CCCCHHHHHHHHHHhC----C----------CCEEEEeCCCCcHHHHHHHHHHHH-----------HHhh-------c--
Confidence 4589999999987651 1 237999999999997543322110 0100 0
Q ss_pred CCCCCcccCCchhHHhhhhhhhhhccCCCCCCCCcEEEEecCchhHHHHHHHHHh
Q 042849 739 ESNSDNVSMGSIDEVLQNMDQNLLRTLPKLCPKPRMLVCAPSNAATDELLTRVLD 793 (1019)
Q Consensus 739 ~~~s~~~~~g~~~e~~~~~~~n~~r~~~k~~~k~RILVCAPSNaAVDEll~RLl~ 793 (1019)
.....+.++||++||.+.+.++..++.+
T Consensus 92 ---------------------------~~~~~~~~~lil~Pt~~L~~q~~~~~~~ 119 (236)
T 2pl3_A 92 ---------------------------WTSTDGLGVLIISPTRELAYQTFEVLRK 119 (236)
T ss_dssp ---------------------------CCGGGCCCEEEECSSHHHHHHHHHHHHH
T ss_pred ---------------------------ccccCCceEEEEeCCHHHHHHHHHHHHH
Confidence 0001367999999999999999998864
No 18
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=97.87 E-value=0.0001 Score=79.66 Aligned_cols=64 Identities=20% Similarity=0.214 Sum_probs=48.4
Q ss_pred cCCChHHHHHHHHHHHHhhcCCCCCCCCCCCCeeEEeCCCCCChhHHHHHHHHHHHHHhhhhhhhhhhhhcCcccccCCC
Q 042849 659 RTFNGPQLAAIQWAAIHTAAGTSSGMTKSPWPFTLVQGPPGTGKTHTVWGMLNVIHLVQYQHYYNSLLKKLAPESYKQPN 738 (1019)
Q Consensus 659 ~~LNeSQ~eAI~~Al~~~~~g~s~~~~k~~~~fsLIQGPPGTGKTkTI~~LL~~Lll~~~q~~~~sLlk~l~~~~~kq~~ 738 (1019)
..|++.|.+||...+. ..-.+|++|+|+|||.+....+. .
T Consensus 15 ~~l~~~Q~~~i~~i~~--------------~~~~lv~~~TGsGKT~~~~~~~~---------------~----------- 54 (337)
T 2z0m_A 15 KNFTEVQSKTIPLMLQ--------------GKNVVVRAKTGSGKTAAYAIPIL---------------E----------- 54 (337)
T ss_dssp CSCCHHHHHHHHHHHT--------------TCCEEEECCTTSSHHHHHHHHHH---------------H-----------
T ss_pred CCCCHHHHHHHHHHhc--------------CCCEEEEcCCCCcHHHHHHHHHH---------------h-----------
Confidence 4689999999986551 12379999999999965433221 0
Q ss_pred CCCCCcccCCchhHHhhhhhhhhhccCCCCCCCCcEEEEecCchhHHHHHHHHHh
Q 042849 739 ESNSDNVSMGSIDEVLQNMDQNLLRTLPKLCPKPRMLVCAPSNAATDELLTRVLD 793 (1019)
Q Consensus 739 ~~~s~~~~~g~~~e~~~~~~~n~~r~~~k~~~k~RILVCAPSNaAVDEll~RLl~ 793 (1019)
.+.++||++|+.+.+.++..++.+
T Consensus 55 -------------------------------~~~~~liv~P~~~L~~q~~~~~~~ 78 (337)
T 2z0m_A 55 -------------------------------LGMKSLVVTPTRELTRQVASHIRD 78 (337)
T ss_dssp -------------------------------HTCCEEEECSSHHHHHHHHHHHHH
T ss_pred -------------------------------hcCCEEEEeCCHHHHHHHHHHHHH
Confidence 156899999999999999999864
No 19
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=97.86 E-value=0.00021 Score=72.44 Aligned_cols=70 Identities=19% Similarity=0.123 Sum_probs=48.4
Q ss_pred cCCChHHHHHHHHHHHHhhcCCCCCCCCCCCCeeEEeCCCCCChhHHHHHHHHHHHHHhhhhhhhhhhhhcCcccccCCC
Q 042849 659 RTFNGPQLAAIQWAAIHTAAGTSSGMTKSPWPFTLVQGPPGTGKTHTVWGMLNVIHLVQYQHYYNSLLKKLAPESYKQPN 738 (1019)
Q Consensus 659 ~~LNeSQ~eAI~~Al~~~~~g~s~~~~k~~~~fsLIQGPPGTGKTkTI~~LL~~Lll~~~q~~~~sLlk~l~~~~~kq~~ 738 (1019)
..+++.|.+||..++. | .-.+|++|+|+|||.+....+ +.. +.
T Consensus 24 ~~~~~~Q~~~i~~~~~----~----------~~~lv~apTGsGKT~~~~~~~--~~~----------~~----------- 66 (206)
T 1vec_A 24 EKPSPIQEESIPIALS----G----------RDILARAKNGTGKSGAYLIPL--LER----------LD----------- 66 (206)
T ss_dssp CSCCHHHHHHHHHHHT----T----------CCEEEECCSSSTTHHHHHHHH--HHH----------CC-----------
T ss_pred CCCCHHHHHHHHHHcc----C----------CCEEEECCCCCchHHHHHHHH--HHH----------hc-----------
Confidence 3689999999987651 1 237999999999995432221 100 00
Q ss_pred CCCCCcccCCchhHHhhhhhhhhhccCCCCCCCCcEEEEecCchhHHHHHHHHHh
Q 042849 739 ESNSDNVSMGSIDEVLQNMDQNLLRTLPKLCPKPRMLVCAPSNAATDELLTRVLD 793 (1019)
Q Consensus 739 ~~~s~~~~~g~~~e~~~~~~~n~~r~~~k~~~k~RILVCAPSNaAVDEll~RLl~ 793 (1019)
....+.++||++||.+.+.++..++.+
T Consensus 67 ----------------------------~~~~~~~~lil~Pt~~L~~q~~~~~~~ 93 (206)
T 1vec_A 67 ----------------------------LKKDNIQAMVIVPTRELALQVSQICIQ 93 (206)
T ss_dssp ----------------------------TTSCSCCEEEECSCHHHHHHHHHHHHH
T ss_pred ----------------------------ccCCCeeEEEEeCcHHHHHHHHHHHHH
Confidence 011357899999999999999888754
No 20
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=97.81 E-value=0.00028 Score=72.61 Aligned_cols=69 Identities=19% Similarity=0.097 Sum_probs=48.2
Q ss_pred CCChHHHHHHHHHHHHhhcCCCCCCCCCCCCeeEEeCCCCCChhHHHHHHHHHHHHHhhhhhhhhhhhhcCcccccCCCC
Q 042849 660 TFNGPQLAAIQWAAIHTAAGTSSGMTKSPWPFTLVQGPPGTGKTHTVWGMLNVIHLVQYQHYYNSLLKKLAPESYKQPNE 739 (1019)
Q Consensus 660 ~LNeSQ~eAI~~Al~~~~~g~s~~~~k~~~~fsLIQGPPGTGKTkTI~~LL~~Lll~~~q~~~~sLlk~l~~~~~kq~~~ 739 (1019)
.+++.|.+||..++. + .-.||++|+|+|||.+....+. . .+.
T Consensus 36 ~~~~~Q~~~i~~~~~----~----------~~~li~~~TGsGKT~~~~~~~~--~----------~~~------------ 77 (220)
T 1t6n_A 36 HPSEVQHECIPQAIL----G----------MDVLCQAKSGMGKTAVFVLATL--Q----------QLE------------ 77 (220)
T ss_dssp CCCHHHHHHHHHHHT----T----------CCEEEECCTTSCHHHHHHHHHH--H----------HCC------------
T ss_pred CCCHHHHHHHHHHhC----C----------CCEEEECCCCCchhhhhhHHHH--H----------hhh------------
Confidence 489999999987651 1 2279999999999965433221 0 000
Q ss_pred CCCCcccCCchhHHhhhhhhhhhccCCCCCCCCcEEEEecCchhHHHHHHHHHh
Q 042849 740 SNSDNVSMGSIDEVLQNMDQNLLRTLPKLCPKPRMLVCAPSNAATDELLTRVLD 793 (1019)
Q Consensus 740 ~~s~~~~~g~~~e~~~~~~~n~~r~~~k~~~k~RILVCAPSNaAVDEll~RLl~ 793 (1019)
....+.++||++||.+.++++..++.+
T Consensus 78 ---------------------------~~~~~~~~lil~Pt~~L~~q~~~~~~~ 104 (220)
T 1t6n_A 78 ---------------------------PVTGQVSVLVMCHTRELAFQISKEYER 104 (220)
T ss_dssp ---------------------------CCTTCCCEEEECSCHHHHHHHHHHHHH
T ss_pred ---------------------------ccCCCEEEEEEeCCHHHHHHHHHHHHH
Confidence 011256999999999999999888754
No 21
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=97.81 E-value=0.00017 Score=78.82 Aligned_cols=70 Identities=13% Similarity=0.047 Sum_probs=51.2
Q ss_pred cCCChHHHHHHHHHHHHhhcCCCCCCCCCCCCeeEEeCCCCCChhHHHHHHHHHHHHHhhhhhhhhhhhhcCcccccCCC
Q 042849 659 RTFNGPQLAAIQWAAIHTAAGTSSGMTKSPWPFTLVQGPPGTGKTHTVWGMLNVIHLVQYQHYYNSLLKKLAPESYKQPN 738 (1019)
Q Consensus 659 ~~LNeSQ~eAI~~Al~~~~~g~s~~~~k~~~~fsLIQGPPGTGKTkTI~~LL~~Lll~~~q~~~~sLlk~l~~~~~kq~~ 738 (1019)
..+++-|.+||..++. + ..-.+|++|+|||||.+....+..+ +.
T Consensus 27 ~~~~~~Q~~~i~~~~~----~---------~~~~l~~~~TGsGKT~~~~~~~~~~------------~~----------- 70 (367)
T 1hv8_A 27 EKPTDIQMKVIPLFLN----D---------EYNIVAQARTGSGKTASFAIPLIEL------------VN----------- 70 (367)
T ss_dssp CSCCHHHHHHHHHHHH----T---------CSEEEEECCSSSSHHHHHHHHHHHH------------SC-----------
T ss_pred CCCCHHHHHHHHHHhC----C---------CCCEEEECCCCChHHHHHHHHHHHH------------hc-----------
Confidence 4689999999987762 1 1347999999999997654433210 00
Q ss_pred CCCCCcccCCchhHHhhhhhhhhhccCCCCCCCCcEEEEecCchhHHHHHHHHHh
Q 042849 739 ESNSDNVSMGSIDEVLQNMDQNLLRTLPKLCPKPRMLVCAPSNAATDELLTRVLD 793 (1019)
Q Consensus 739 ~~~s~~~~~g~~~e~~~~~~~n~~r~~~k~~~k~RILVCAPSNaAVDEll~RLl~ 793 (1019)
...+.++||++|+.+.++++..++.+
T Consensus 71 -----------------------------~~~~~~~lil~P~~~L~~q~~~~~~~ 96 (367)
T 1hv8_A 71 -----------------------------ENNGIEAIILTPTRELAIQVADEIES 96 (367)
T ss_dssp -----------------------------SSSSCCEEEECSCHHHHHHHHHHHHH
T ss_pred -----------------------------ccCCCcEEEEcCCHHHHHHHHHHHHH
Confidence 01367999999999999999999854
No 22
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=97.81 E-value=0.00021 Score=75.80 Aligned_cols=70 Identities=20% Similarity=0.114 Sum_probs=48.7
Q ss_pred cCCChHHHHHHHHHHHHhhcCCCCCCCCCCCCeeEEeCCCCCChhHHHHHHHHHHHHHhhhhhhhhhhhhcCcccccCCC
Q 042849 659 RTFNGPQLAAIQWAAIHTAAGTSSGMTKSPWPFTLVQGPPGTGKTHTVWGMLNVIHLVQYQHYYNSLLKKLAPESYKQPN 738 (1019)
Q Consensus 659 ~~LNeSQ~eAI~~Al~~~~~g~s~~~~k~~~~fsLIQGPPGTGKTkTI~~LL~~Lll~~~q~~~~sLlk~l~~~~~kq~~ 738 (1019)
..+++-|.+||..++. | .-.||++|.|||||.+....+. .. ++.
T Consensus 64 ~~~~~~Q~~~i~~i~~----~----------~~~lv~a~TGsGKT~~~~~~il--~~---------l~~----------- 107 (249)
T 3ber_A 64 TKPTKIQIEAIPLALQ----G----------RDIIGLAETGSGKTGAFALPIL--NA---------LLE----------- 107 (249)
T ss_dssp CSCCHHHHHHHHHHHT----T----------CCEEEECCTTSCHHHHHHHHHH--HH---------HHH-----------
T ss_pred CCCCHHHHHHHHHHhC----C----------CCEEEEcCCCCCchhHhHHHHH--HH---------Hhc-----------
Confidence 3688999999987651 1 2379999999999965433221 00 110
Q ss_pred CCCCCcccCCchhHHhhhhhhhhhccCCCCCCCCcEEEEecCchhHHHHHHHHHh
Q 042849 739 ESNSDNVSMGSIDEVLQNMDQNLLRTLPKLCPKPRMLVCAPSNAATDELLTRVLD 793 (1019)
Q Consensus 739 ~~~s~~~~~g~~~e~~~~~~~n~~r~~~k~~~k~RILVCAPSNaAVDEll~RLl~ 793 (1019)
...+.++||.+||...+.++..++.+
T Consensus 108 -----------------------------~~~~~~~lil~Ptr~L~~q~~~~~~~ 133 (249)
T 3ber_A 108 -----------------------------TPQRLFALVLTPTRELAFQISEQFEA 133 (249)
T ss_dssp -----------------------------SCCSSCEEEECSSHHHHHHHHHHHHH
T ss_pred -----------------------------CCCCceEEEEeCCHHHHHHHHHHHHH
Confidence 01256899999999999999988754
No 23
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=97.79 E-value=0.00013 Score=83.99 Aligned_cols=64 Identities=20% Similarity=0.190 Sum_probs=49.2
Q ss_pred cCCChHHHHHHHHHHHHhhcCCCCCCCCCCCCeeEEeCCCCCChhHHHHHHHHHHHHHhhhhhhhhhhhhcCcccccCCC
Q 042849 659 RTFNGPQLAAIQWAAIHTAAGTSSGMTKSPWPFTLVQGPPGTGKTHTVWGMLNVIHLVQYQHYYNSLLKKLAPESYKQPN 738 (1019)
Q Consensus 659 ~~LNeSQ~eAI~~Al~~~~~g~s~~~~k~~~~fsLIQGPPGTGKTkTI~~LL~~Lll~~~q~~~~sLlk~l~~~~~kq~~ 738 (1019)
..|++.|.+||...+. ..-.||.+|.|+|||.+...++..
T Consensus 92 ~~l~~~Q~~ai~~i~~--------------~~~~ll~~~TGsGKT~~~l~~i~~-------------------------- 131 (472)
T 2fwr_A 92 ISLRDYQEKALERWLV--------------DKRGCIVLPTGSGKTHVAMAAINE-------------------------- 131 (472)
T ss_dssp CCBCHHHHHHHHHHTT--------------TTEEEEECCTTSCHHHHHHHHHHH--------------------------
T ss_pred CCcCHHHHHHHHHHHh--------------cCCEEEEeCCCCCHHHHHHHHHHH--------------------------
Confidence 4789999999986541 123899999999999875544321
Q ss_pred CCCCCcccCCchhHHhhhhhhhhhccCCCCCCCCcEEEEecCchhHHHHHHHHHh
Q 042849 739 ESNSDNVSMGSIDEVLQNMDQNLLRTLPKLCPKPRMLVCAPSNAATDELLTRVLD 793 (1019)
Q Consensus 739 ~~~s~~~~~g~~~e~~~~~~~n~~r~~~k~~~k~RILVCAPSNaAVDEll~RLl~ 793 (1019)
.+.++||.+|+...+.+...++.+
T Consensus 132 -------------------------------~~~~~Lvl~P~~~L~~Q~~~~~~~ 155 (472)
T 2fwr_A 132 -------------------------------LSTPTLIVVPTLALAEQWKERLGI 155 (472)
T ss_dssp -------------------------------HCSCEEEEESSHHHHHHHHHHGGG
T ss_pred -------------------------------cCCCEEEEECCHHHHHHHHHHHHh
Confidence 046899999999999999998753
No 24
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=97.73 E-value=0.00015 Score=75.94 Aligned_cols=70 Identities=24% Similarity=0.193 Sum_probs=48.8
Q ss_pred cCCChHHHHHHHHHHHHhhcCCCCCCCCCCCCeeEEeCCCCCChhHHHHHHHHHHHHHhhhhhhhhhhhhcCcccccCCC
Q 042849 659 RTFNGPQLAAIQWAAIHTAAGTSSGMTKSPWPFTLVQGPPGTGKTHTVWGMLNVIHLVQYQHYYNSLLKKLAPESYKQPN 738 (1019)
Q Consensus 659 ~~LNeSQ~eAI~~Al~~~~~g~s~~~~k~~~~fsLIQGPPGTGKTkTI~~LL~~Lll~~~q~~~~sLlk~l~~~~~kq~~ 738 (1019)
..+++-|.+||..++. | .-.||++|+|||||.+....+ +.. +.
T Consensus 51 ~~~~~~Q~~ai~~i~~----~----------~~~li~apTGsGKT~~~~l~~--l~~---------l~------------ 93 (237)
T 3bor_A 51 EKPSAIQQRAIIPCIK----G----------YDVIAQAQSGTGKTATFAISI--LQQ---------LE------------ 93 (237)
T ss_dssp CSCCHHHHHHHHHHHT----T----------CCEEECCCSSHHHHHHHHHHH--HHH---------CC------------
T ss_pred CCCCHHHHHHHHHHhC----C----------CCEEEECCCCCcHHHHHHHHH--HHH---------HH------------
Confidence 3589999999987651 1 227999999999996532221 100 00
Q ss_pred CCCCCcccCCchhHHhhhhhhhhhccCCCCCCCCcEEEEecCchhHHHHHHHHHh
Q 042849 739 ESNSDNVSMGSIDEVLQNMDQNLLRTLPKLCPKPRMLVCAPSNAATDELLTRVLD 793 (1019)
Q Consensus 739 ~~~s~~~~~g~~~e~~~~~~~n~~r~~~k~~~k~RILVCAPSNaAVDEll~RLl~ 793 (1019)
....+.++||++||.+.+.++..++.+
T Consensus 94 ----------------------------~~~~~~~~lil~Pt~~L~~q~~~~~~~ 120 (237)
T 3bor_A 94 ----------------------------IEFKETQALVLAPTRELAQQIQKVILA 120 (237)
T ss_dssp ----------------------------TTSCSCCEEEECSSHHHHHHHHHHHHH
T ss_pred ----------------------------hcCCCceEEEEECcHHHHHHHHHHHHH
Confidence 011367999999999999999988854
No 25
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=97.72 E-value=0.00022 Score=76.24 Aligned_cols=72 Identities=17% Similarity=0.149 Sum_probs=49.0
Q ss_pred CCChHHHHHHHHHHHHhhcCCCCCCCCCCCCeeEEeCCCCCChhHHHHH-HHHHHHHHhhhhhhhhhhhhcCcccccCCC
Q 042849 660 TFNGPQLAAIQWAAIHTAAGTSSGMTKSPWPFTLVQGPPGTGKTHTVWG-MLNVIHLVQYQHYYNSLLKKLAPESYKQPN 738 (1019)
Q Consensus 660 ~LNeSQ~eAI~~Al~~~~~g~s~~~~k~~~~fsLIQGPPGTGKTkTI~~-LL~~Lll~~~q~~~~sLlk~l~~~~~kq~~ 738 (1019)
.+++-|.+||..++. | .-.||++|.|+|||.+... ++..+ .+. +.
T Consensus 76 ~~~~~Q~~~i~~~~~----~----------~~~lv~a~TGsGKT~~~~l~~l~~l------------~~~------~~-- 121 (262)
T 3ly5_A 76 NMTEIQHKSIRPLLE----G----------RDLLAAAKTGSGKTLAFLIPAVELI------------VKL------RF-- 121 (262)
T ss_dssp BCCHHHHHHHHHHHH----T----------CCCEECCCTTSCHHHHHHHHHHHHH------------HHT------TC--
T ss_pred CCCHHHHHHHHHHhC----C----------CcEEEEccCCCCchHHHHHHHHHHH------------Hhc------cc--
Confidence 589999999987662 1 1269999999999965322 22111 100 00
Q ss_pred CCCCCcccCCchhHHhhhhhhhhhccCCCCCCCCcEEEEecCchhHHHHHHHHHh
Q 042849 739 ESNSDNVSMGSIDEVLQNMDQNLLRTLPKLCPKPRMLVCAPSNAATDELLTRVLD 793 (1019)
Q Consensus 739 ~~~s~~~~~g~~~e~~~~~~~n~~r~~~k~~~k~RILVCAPSNaAVDEll~RLl~ 793 (1019)
....+.++||.+||.+-+.++..++.+
T Consensus 122 ----------------------------~~~~~~~~lil~Pt~~La~q~~~~~~~ 148 (262)
T 3ly5_A 122 ----------------------------MPRNGTGVLILSPTRELAMQTFGVLKE 148 (262)
T ss_dssp ----------------------------CGGGCCCEEEECSSHHHHHHHHHHHHH
T ss_pred ----------------------------cccCCceEEEEeCCHHHHHHHHHHHHH
Confidence 001267899999999999999998865
No 26
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=97.71 E-value=0.00032 Score=73.12 Aligned_cols=68 Identities=25% Similarity=0.252 Sum_probs=48.2
Q ss_pred CCChHHHHHHHHHHHHhhcCCCCCCCCCCCCeeEEeCCCCCChhHHHHH-HHHHHHHHhhhhhhhhhhhhcCcccccCCC
Q 042849 660 TFNGPQLAAIQWAAIHTAAGTSSGMTKSPWPFTLVQGPPGTGKTHTVWG-MLNVIHLVQYQHYYNSLLKKLAPESYKQPN 738 (1019)
Q Consensus 660 ~LNeSQ~eAI~~Al~~~~~g~s~~~~k~~~~fsLIQGPPGTGKTkTI~~-LL~~Lll~~~q~~~~sLlk~l~~~~~kq~~ 738 (1019)
.+++-|.+||..++. | .-.+|++|.|+|||.+... ++.. ++.
T Consensus 46 ~~~~~Q~~~i~~~~~----~----------~~~l~~a~TGsGKT~~~~l~~l~~------------l~~----------- 88 (230)
T 2oxc_A 46 RPSPVQLKAIPLGRC----G----------LDLIVQAKSGTGKTCVFSTIALDS------------LVL----------- 88 (230)
T ss_dssp SCCHHHHHHHHHHHT----T----------CCEEEECCTTSSHHHHHHHHHHHH------------CCT-----------
T ss_pred CCCHHHHHHHHHHhC----C----------CCEEEECCCCCcHHHHHHHHHHHH------------HHh-----------
Confidence 488999999986651 1 2279999999999965322 2210 000
Q ss_pred CCCCCcccCCchhHHhhhhhhhhhccCCCCCCCCcEEEEecCchhHHHHHHHHHh
Q 042849 739 ESNSDNVSMGSIDEVLQNMDQNLLRTLPKLCPKPRMLVCAPSNAATDELLTRVLD 793 (1019)
Q Consensus 739 ~~~s~~~~~g~~~e~~~~~~~n~~r~~~k~~~k~RILVCAPSNaAVDEll~RLl~ 793 (1019)
...+.++||.+||.+-+.++..++.+
T Consensus 89 -----------------------------~~~~~~~lil~Pt~~L~~q~~~~~~~ 114 (230)
T 2oxc_A 89 -----------------------------ENLSTQILILAPTREIAVQIHSVITA 114 (230)
T ss_dssp -----------------------------TSCSCCEEEECSSHHHHHHHHHHHHH
T ss_pred -----------------------------cCCCceEEEEeCCHHHHHHHHHHHHH
Confidence 11367999999999999999998864
No 27
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=97.71 E-value=0.00012 Score=87.13 Aligned_cols=44 Identities=25% Similarity=0.135 Sum_probs=31.1
Q ss_pred cCCChHHHHHHHHHHHHhhcCCCCCCCCCCCCeeEEeCCCCCChhHHHHHHHH
Q 042849 659 RTFNGPQLAAIQWAAIHTAAGTSSGMTKSPWPFTLVQGPPGTGKTHTVWGMLN 711 (1019)
Q Consensus 659 ~~LNeSQ~eAI~~Al~~~~~g~s~~~~k~~~~fsLIQGPPGTGKTkTI~~LL~ 711 (1019)
..+.+.|.+||..++.....+ ..-.||++|.|||||.++..++.
T Consensus 177 ~~lr~~Q~~ai~~~~~~~~~~---------~~~~ll~~~TGsGKT~~~~~~~~ 220 (590)
T 3h1t_A 177 YSPRYYQQIAINRAVQSVLQG---------KKRSLITMATGTGKTVVAFQISW 220 (590)
T ss_dssp --CCHHHHHHHHHHHHHHHTT---------CSEEEEEECTTSCHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHHhcC---------CCceEEEecCCCChHHHHHHHHH
Confidence 378999999999876432211 23369999999999998766654
No 28
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=97.68 E-value=0.00023 Score=73.76 Aligned_cols=76 Identities=20% Similarity=0.054 Sum_probs=49.1
Q ss_pred cCCChHHHHHHHHHHHHhhcCCCCCCCCCCCCeeEEeCCCCCChhHHHHHHHHHHHHHhhhhhhhhhhhhcCcccccCCC
Q 042849 659 RTFNGPQLAAIQWAAIHTAAGTSSGMTKSPWPFTLVQGPPGTGKTHTVWGMLNVIHLVQYQHYYNSLLKKLAPESYKQPN 738 (1019)
Q Consensus 659 ~~LNeSQ~eAI~~Al~~~~~g~s~~~~k~~~~fsLIQGPPGTGKTkTI~~LL~~Lll~~~q~~~~sLlk~l~~~~~kq~~ 738 (1019)
..+++.|.+||..++. | .-.+|++|.|+|||.+....+ +.. +.. ....
T Consensus 41 ~~~~~~Q~~~i~~~~~----~----------~~~l~~apTGsGKT~~~~l~~--~~~---------l~~----~~~~--- 88 (228)
T 3iuy_A 41 LKPTPIQSQAWPIILQ----G----------IDLIVVAQTGTGKTLSYLMPG--FIH---------LDS----QPIS--- 88 (228)
T ss_dssp CSCCHHHHHHHHHHHT----T----------CCEEEECCTTSCHHHHHHHHH--HHH---------HC------------
T ss_pred CCCCHHHHHHHHHHhC----C----------CCEEEECCCCChHHHHHHHHH--HHH---------HHh----ccch---
Confidence 3689999999987651 1 226999999999996533221 110 000 0000
Q ss_pred CCCCCcccCCchhHHhhhhhhhhhccCCCCCCCCcEEEEecCchhHHHHHHHHHh
Q 042849 739 ESNSDNVSMGSIDEVLQNMDQNLLRTLPKLCPKPRMLVCAPSNAATDELLTRVLD 793 (1019)
Q Consensus 739 ~~~s~~~~~g~~~e~~~~~~~n~~r~~~k~~~k~RILVCAPSNaAVDEll~RLl~ 793 (1019)
.....++++||.+||.+.+.++..++.+
T Consensus 89 ---------------------------~~~~~~~~~lil~Pt~~L~~q~~~~~~~ 116 (228)
T 3iuy_A 89 ---------------------------REQRNGPGMLVLTPTRELALHVEAECSK 116 (228)
T ss_dssp -------------------------------CCCSEEEECSSHHHHHHHHHHHHH
T ss_pred ---------------------------hhccCCCcEEEEeCCHHHHHHHHHHHHH
Confidence 0012478999999999999999998865
No 29
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=97.63 E-value=0.00025 Score=79.55 Aligned_cols=66 Identities=15% Similarity=-0.025 Sum_probs=51.0
Q ss_pred CCChHHHHHHHHHHHHhhcCCCCCCCCCCCCeeEEeCCCCCChhHHHHHHHHHHHHHhhhhhhhhhhhhcCcccccCCCC
Q 042849 660 TFNGPQLAAIQWAAIHTAAGTSSGMTKSPWPFTLVQGPPGTGKTHTVWGMLNVIHLVQYQHYYNSLLKKLAPESYKQPNE 739 (1019)
Q Consensus 660 ~LNeSQ~eAI~~Al~~~~~g~s~~~~k~~~~fsLIQGPPGTGKTkTI~~LL~~Lll~~~q~~~~sLlk~l~~~~~kq~~~ 739 (1019)
.|.+.|.+|+..++. + -.||.+|+|+|||.+...++..++.
T Consensus 9 ~l~~~Q~~~i~~~~~----~-----------~~ll~~~tG~GKT~~~~~~~~~~~~------------------------ 49 (494)
T 1wp9_A 9 QPRIYQEVIYAKCKE----T-----------NCLIVLPTGLGKTLIAMMIAEYRLT------------------------ 49 (494)
T ss_dssp CCCHHHHHHHHHGGG----S-----------CEEEECCTTSCHHHHHHHHHHHHHH------------------------
T ss_pred CccHHHHHHHHHHhh----C-----------CEEEEcCCCCCHHHHHHHHHHHHHh------------------------
Confidence 789999999987651 1 3799999999999877666542110
Q ss_pred CCCCcccCCchhHHhhhhhhhhhccCCCCCCCCcEEEEecCchhHHHHHHHHHh
Q 042849 740 SNSDNVSMGSIDEVLQNMDQNLLRTLPKLCPKPRMLVCAPSNAATDELLTRVLD 793 (1019)
Q Consensus 740 ~~s~~~~~g~~~e~~~~~~~n~~r~~~k~~~k~RILVCAPSNaAVDEll~RLl~ 793 (1019)
..+.++||++|+.+.+++...++.+
T Consensus 50 -----------------------------~~~~~~liv~P~~~L~~q~~~~~~~ 74 (494)
T 1wp9_A 50 -----------------------------KYGGKVLMLAPTKPLVLQHAESFRR 74 (494)
T ss_dssp -----------------------------HSCSCEEEECSSHHHHHHHHHHHHH
T ss_pred -----------------------------cCCCeEEEEECCHHHHHHHHHHHHH
Confidence 0257899999999999999999864
No 30
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=97.62 E-value=0.00041 Score=77.27 Aligned_cols=69 Identities=23% Similarity=0.080 Sum_probs=48.7
Q ss_pred CCChHHHHHHHHHHHHhhcCCCCCCCCCCCCeeEEeCCCCCChhHHHHHHHHHHHHHhhhhhhhhhhhhcCcccccCCCC
Q 042849 660 TFNGPQLAAIQWAAIHTAAGTSSGMTKSPWPFTLVQGPPGTGKTHTVWGMLNVIHLVQYQHYYNSLLKKLAPESYKQPNE 739 (1019)
Q Consensus 660 ~LNeSQ~eAI~~Al~~~~~g~s~~~~k~~~~fsLIQGPPGTGKTkTI~~LL~~Lll~~~q~~~~sLlk~l~~~~~kq~~~ 739 (1019)
.+++.|.+||..++. + .-.||++|+|+|||.+....+.. . +.
T Consensus 43 ~~~~~Q~~~i~~i~~----~----------~~~li~a~TGsGKT~~~~~~~~~--~----------~~------------ 84 (400)
T 1s2m_A 43 KPSPIQEEAIPVAIT----G----------RDILARAKNGTGKTAAFVIPTLE--K----------VK------------ 84 (400)
T ss_dssp SCCHHHHHHHHHHHH----T----------CCEEEECCTTSCHHHHHHHHHHH--H----------CC------------
T ss_pred CCCHHHHHHHHHHhc----C----------CCEEEECCCCcHHHHHHHHHHHH--H----------Hh------------
Confidence 589999999987652 1 22799999999999654332210 0 00
Q ss_pred CCCCcccCCchhHHhhhhhhhhhccCCCCCCCCcEEEEecCchhHHHHHHHHHh
Q 042849 740 SNSDNVSMGSIDEVLQNMDQNLLRTLPKLCPKPRMLVCAPSNAATDELLTRVLD 793 (1019)
Q Consensus 740 ~~s~~~~~g~~~e~~~~~~~n~~r~~~k~~~k~RILVCAPSNaAVDEll~RLl~ 793 (1019)
....+.++||++|+.+.+.++..++.+
T Consensus 85 ---------------------------~~~~~~~~lil~P~~~L~~q~~~~~~~ 111 (400)
T 1s2m_A 85 ---------------------------PKLNKIQALIMVPTRELALQTSQVVRT 111 (400)
T ss_dssp ---------------------------TTSCSCCEEEECSSHHHHHHHHHHHHH
T ss_pred ---------------------------hccCCccEEEEcCCHHHHHHHHHHHHH
Confidence 001356899999999999999988854
No 31
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=97.60 E-value=0.00055 Score=76.36 Aligned_cols=70 Identities=23% Similarity=0.126 Sum_probs=49.4
Q ss_pred cCCChHHHHHHHHHHHHhhcCCCCCCCCCCCCeeEEeCCCCCChhHHHHHHHHHHHHHhhhhhhhhhhhhcCcccccCCC
Q 042849 659 RTFNGPQLAAIQWAAIHTAAGTSSGMTKSPWPFTLVQGPPGTGKTHTVWGMLNVIHLVQYQHYYNSLLKKLAPESYKQPN 738 (1019)
Q Consensus 659 ~~LNeSQ~eAI~~Al~~~~~g~s~~~~k~~~~fsLIQGPPGTGKTkTI~~LL~~Lll~~~q~~~~sLlk~l~~~~~kq~~ 738 (1019)
..+++-|.+||..++. | .-.||++|.|+|||.+....+... +.
T Consensus 61 ~~~~~~Q~~~i~~~~~----~----------~~~lv~a~TGsGKT~~~~~~~~~~-----------~~------------ 103 (414)
T 3eiq_A 61 EKPSAIQQRAILPCIK----G----------YDVIAQAQSGTGKTATFAISILQQ-----------IE------------ 103 (414)
T ss_dssp CSCCHHHHHHHHHHHT----T----------CCEEECCCSCSSSHHHHHHHHHHH-----------CC------------
T ss_pred CCCCHHHHHHhHHHhC----C----------CCEEEECCCCCcccHHHHHHHHHH-----------Hh------------
Confidence 3578999999987651 1 227999999999997643332100 00
Q ss_pred CCCCCcccCCchhHHhhhhhhhhhccCCCCCCCCcEEEEecCchhHHHHHHHHHh
Q 042849 739 ESNSDNVSMGSIDEVLQNMDQNLLRTLPKLCPKPRMLVCAPSNAATDELLTRVLD 793 (1019)
Q Consensus 739 ~~~s~~~~~g~~~e~~~~~~~n~~r~~~k~~~k~RILVCAPSNaAVDEll~RLl~ 793 (1019)
....+.++||++|+.+.+.++..++.+
T Consensus 104 ----------------------------~~~~~~~~lil~P~~~L~~q~~~~~~~ 130 (414)
T 3eiq_A 104 ----------------------------LDLKATQALVLAPTRELAQQIQKVVMA 130 (414)
T ss_dssp ----------------------------TTSCSCCEEEECSSHHHHHHHHHHHHH
T ss_pred ----------------------------hcCCceeEEEEeChHHHHHHHHHHHHH
Confidence 011367899999999999999998865
No 32
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=97.57 E-value=0.00065 Score=75.18 Aligned_cols=70 Identities=19% Similarity=0.097 Sum_probs=48.5
Q ss_pred cCCChHHHHHHHHHHHHhhcCCCCCCCCCCCCeeEEeCCCCCChhHHHHHHHHHHHHHhhhhhhhhhhhhcCcccccCCC
Q 042849 659 RTFNGPQLAAIQWAAIHTAAGTSSGMTKSPWPFTLVQGPPGTGKTHTVWGMLNVIHLVQYQHYYNSLLKKLAPESYKQPN 738 (1019)
Q Consensus 659 ~~LNeSQ~eAI~~Al~~~~~g~s~~~~k~~~~fsLIQGPPGTGKTkTI~~LL~~Lll~~~q~~~~sLlk~l~~~~~kq~~ 738 (1019)
..+.+.|.+||..++. + .-.||++|+|+|||.+....+. . .+.
T Consensus 29 ~~~~~~Q~~~i~~~~~----~----------~~~lv~a~TGsGKT~~~~~~~~--~----------~l~----------- 71 (391)
T 1xti_A 29 EHPSEVQHECIPQAIL----G----------MDVLCQAKSGMGKTAVFVLATL--Q----------QLE----------- 71 (391)
T ss_dssp CSCCHHHHHHHHHHTT----T----------CCEEEECSSCSSHHHHHHHHHH--H----------HCC-----------
T ss_pred CCCCHHHHHHHHHHhc----C----------CcEEEECCCCCcHHHHHHHHHH--H----------hhc-----------
Confidence 3589999999986541 1 2379999999999955433221 0 000
Q ss_pred CCCCCcccCCchhHHhhhhhhhhhccCCCCCCCCcEEEEecCchhHHHHHHHHHh
Q 042849 739 ESNSDNVSMGSIDEVLQNMDQNLLRTLPKLCPKPRMLVCAPSNAATDELLTRVLD 793 (1019)
Q Consensus 739 ~~~s~~~~~g~~~e~~~~~~~n~~r~~~k~~~k~RILVCAPSNaAVDEll~RLl~ 793 (1019)
....+.++||++|+.+.+.++..++.+
T Consensus 72 ----------------------------~~~~~~~~lil~P~~~L~~q~~~~~~~ 98 (391)
T 1xti_A 72 ----------------------------PVTGQVSVLVMCHTRELAFQISKEYER 98 (391)
T ss_dssp ----------------------------CCTTCCCEEEECSCHHHHHHHHHHHHH
T ss_pred ----------------------------ccCCCeeEEEECCCHHHHHHHHHHHHH
Confidence 011357999999999999999888754
No 33
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=97.53 E-value=0.00092 Score=70.41 Aligned_cols=23 Identities=22% Similarity=0.416 Sum_probs=20.4
Q ss_pred CCcEEEEecCchhHHHHHHHHHh
Q 042849 771 KPRMLVCAPSNAATDELLTRVLD 793 (1019)
Q Consensus 771 k~RILVCAPSNaAVDEll~RLl~ 793 (1019)
++++||.+||.+.+.++..++.+
T Consensus 100 ~~~~lil~Pt~~L~~q~~~~~~~ 122 (253)
T 1wrb_A 100 YPKCLILAPTRELAIQILSESQK 122 (253)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHH
T ss_pred CceEEEEECCHHHHHHHHHHHHH
Confidence 57999999999999999988754
No 34
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=97.51 E-value=0.00076 Score=75.48 Aligned_cols=70 Identities=23% Similarity=0.183 Sum_probs=49.7
Q ss_pred cCCChHHHHHHHHHHHHhhcCCCCCCCCCCCCeeEEeCCCCCChhHHHHHHHHHHHHHhhhhhhhhhhhhcCcccccCCC
Q 042849 659 RTFNGPQLAAIQWAAIHTAAGTSSGMTKSPWPFTLVQGPPGTGKTHTVWGMLNVIHLVQYQHYYNSLLKKLAPESYKQPN 738 (1019)
Q Consensus 659 ~~LNeSQ~eAI~~Al~~~~~g~s~~~~k~~~~fsLIQGPPGTGKTkTI~~LL~~Lll~~~q~~~~sLlk~l~~~~~kq~~ 738 (1019)
..+++-|.+||..++. | .-.||++|.|||||.+....+.. .+.
T Consensus 58 ~~~~~~Q~~ai~~i~~----~----------~~~lv~a~TGsGKT~~~~~~~~~------------~l~----------- 100 (410)
T 2j0s_A 58 EKPSAIQQRAIKQIIK----G----------RDVIAQSQSGTGKTATFSISVLQ------------CLD----------- 100 (410)
T ss_dssp CSCCHHHHHHHHHHHT----T----------CCEEEECCTTSSHHHHHHHHHHH------------TCC-----------
T ss_pred CCCCHHHHHHHHHHhC----C----------CCEEEECCCCCCchHHHHHHHHH------------HHh-----------
Confidence 3588999999997651 1 22799999999999665433210 000
Q ss_pred CCCCCcccCCchhHHhhhhhhhhhccCCCCCCCCcEEEEecCchhHHHHHHHHHh
Q 042849 739 ESNSDNVSMGSIDEVLQNMDQNLLRTLPKLCPKPRMLVCAPSNAATDELLTRVLD 793 (1019)
Q Consensus 739 ~~~s~~~~~g~~~e~~~~~~~n~~r~~~k~~~k~RILVCAPSNaAVDEll~RLl~ 793 (1019)
....+.++||.+||.+-+.++..++.+
T Consensus 101 ----------------------------~~~~~~~~lil~Pt~~L~~q~~~~~~~ 127 (410)
T 2j0s_A 101 ----------------------------IQVRETQALILAPTRELAVQIQKGLLA 127 (410)
T ss_dssp ----------------------------TTSCSCCEEEECSSHHHHHHHHHHHHH
T ss_pred ----------------------------hccCCceEEEEcCcHHHHHHHHHHHHH
Confidence 011367999999999999999998865
No 35
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=97.51 E-value=0.00069 Score=71.07 Aligned_cols=34 Identities=21% Similarity=0.065 Sum_probs=26.4
Q ss_pred cCCChHHHHHHHHHHHHhhcCCCCCCCCCCCCeeEEeCCCCCChhHHH
Q 042849 659 RTFNGPQLAAIQWAAIHTAAGTSSGMTKSPWPFTLVQGPPGTGKTHTV 706 (1019)
Q Consensus 659 ~~LNeSQ~eAI~~Al~~~~~g~s~~~~k~~~~fsLIQGPPGTGKTkTI 706 (1019)
..+++-|.+||..++. | .-.+|++|.|+|||.+.
T Consensus 50 ~~~~~~Q~~~i~~~~~----g----------~~~l~~apTGsGKT~~~ 83 (242)
T 3fe2_A 50 TEPTAIQAQGWPVALS----G----------LDMVGVAQTGSGKTLSY 83 (242)
T ss_dssp CSCCHHHHHHHHHHHH----T----------CCEEEEECTTSCHHHHH
T ss_pred CCCCHHHHHHHHHHhC----C----------CCEEEECCCcCHHHHHH
Confidence 3488999999987652 1 23799999999999653
No 36
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=97.44 E-value=0.00036 Score=73.25 Aligned_cols=71 Identities=14% Similarity=0.179 Sum_probs=48.9
Q ss_pred CCChHHHHHHHHHHHHhhcCCCCCCCCCCCCeeEEeCCCCCChhHHHHHHHHHHHHHhhhhhhhhhhhhcCcccccCCCC
Q 042849 660 TFNGPQLAAIQWAAIHTAAGTSSGMTKSPWPFTLVQGPPGTGKTHTVWGMLNVIHLVQYQHYYNSLLKKLAPESYKQPNE 739 (1019)
Q Consensus 660 ~LNeSQ~eAI~~Al~~~~~g~s~~~~k~~~~fsLIQGPPGTGKTkTI~~LL~~Lll~~~q~~~~sLlk~l~~~~~kq~~~ 739 (1019)
.+..-|.++|.... ...+.+|.||.|+|||+++..++... ++..
T Consensus 61 p~~~~q~~~i~~i~--------------~g~~~~i~g~TGsGKTt~~~~~~~~~-----------~~~~----------- 104 (235)
T 3llm_A 61 PVKKFESEILEAIS--------------QNSVVIIRGATGCGKTTQVPQFILDD-----------FIQN----------- 104 (235)
T ss_dssp GGGGGHHHHHHHHH--------------HCSEEEEECCTTSSHHHHHHHHHHHH-----------HHHT-----------
T ss_pred ChHHHHHHHHHHHh--------------cCCEEEEEeCCCCCcHHhHHHHHhcc-----------hhhc-----------
Confidence 35678888887654 13678999999999998766544210 0000
Q ss_pred CCCCcccCCchhHHhhhhhhhhhccCCCCCCCCcEEEEecCchhHHHHHHHHHh
Q 042849 740 SNSDNVSMGSIDEVLQNMDQNLLRTLPKLCPKPRMLVCAPSNAATDELLTRVLD 793 (1019)
Q Consensus 740 ~~s~~~~~g~~~e~~~~~~~n~~r~~~k~~~k~RILVCAPSNaAVDEll~RLl~ 793 (1019)
......++++.+|+.....++..++..
T Consensus 105 ---------------------------~~~~~~~~l~~~p~~~la~q~~~~~~~ 131 (235)
T 3llm_A 105 ---------------------------DRAAECNIVVTQPRRISAVSVAERVAF 131 (235)
T ss_dssp ---------------------------TCGGGCEEEEEESSHHHHHHHHHHHHH
T ss_pred ---------------------------CCCCceEEEEeccchHHHHHHHHHHHH
Confidence 001256899999999999999888854
No 37
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=97.43 E-value=0.00064 Score=75.17 Aligned_cols=70 Identities=24% Similarity=0.153 Sum_probs=49.3
Q ss_pred cCCChHHHHHHHHHHHHhhcCCCCCCCCCCCCeeEEeCCCCCChhHHHHHHHHHHHHHhhhhhhhhhhhhcCcccccCCC
Q 042849 659 RTFNGPQLAAIQWAAIHTAAGTSSGMTKSPWPFTLVQGPPGTGKTHTVWGMLNVIHLVQYQHYYNSLLKKLAPESYKQPN 738 (1019)
Q Consensus 659 ~~LNeSQ~eAI~~Al~~~~~g~s~~~~k~~~~fsLIQGPPGTGKTkTI~~LL~~Lll~~~q~~~~sLlk~l~~~~~kq~~ 738 (1019)
..+++-|.+||...+. | .-.||++|+|+|||.+....+. .. +.
T Consensus 42 ~~~~~~Q~~~i~~i~~----~----------~~~lv~~~TGsGKT~~~~~~~~--~~---------l~------------ 84 (394)
T 1fuu_A 42 EEPSAIQQRAIMPIIE----G----------HDVLAQAQSGTGKTGTFSIAAL--QR---------ID------------ 84 (394)
T ss_dssp CSCCHHHHHHHHHHHH----T----------CCEEECCCSSHHHHHHHHHHHH--HH---------CC------------
T ss_pred CCCCHHHHHHHHHHhC----C----------CCEEEECCCCChHHHHHHHHHH--HH---------hh------------
Confidence 4789999999987652 1 1279999999999965332221 00 00
Q ss_pred CCCCCcccCCchhHHhhhhhhhhhccCCCCCCCCcEEEEecCchhHHHHHHHHHh
Q 042849 739 ESNSDNVSMGSIDEVLQNMDQNLLRTLPKLCPKPRMLVCAPSNAATDELLTRVLD 793 (1019)
Q Consensus 739 ~~~s~~~~~g~~~e~~~~~~~n~~r~~~k~~~k~RILVCAPSNaAVDEll~RLl~ 793 (1019)
....++++||.+|+.+-+.++..++.+
T Consensus 85 ----------------------------~~~~~~~~lil~P~~~L~~q~~~~~~~ 111 (394)
T 1fuu_A 85 ----------------------------TSVKAPQALMLAPTRELALQIQKVVMA 111 (394)
T ss_dssp ----------------------------TTCCSCCEEEECSSHHHHHHHHHHHHH
T ss_pred ----------------------------ccCCCCCEEEEcCCHHHHHHHHHHHHH
Confidence 011367999999999999999988754
No 38
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=97.41 E-value=0.0013 Score=73.53 Aligned_cols=23 Identities=22% Similarity=0.278 Sum_probs=20.4
Q ss_pred CCcEEEEecCchhHHHHHHHHHh
Q 042849 771 KPRMLVCAPSNAATDELLTRVLD 793 (1019)
Q Consensus 771 k~RILVCAPSNaAVDEll~RLl~ 793 (1019)
.+++||++||...+.++..++.+
T Consensus 101 ~~~~lil~Pt~~L~~q~~~~~~~ 123 (417)
T 2i4i_A 101 YPISLVLAPTRELAVQIYEEARK 123 (417)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHH
T ss_pred CccEEEECCcHHHHHHHHHHHHH
Confidence 47899999999999999998854
No 39
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=97.40 E-value=0.00082 Score=78.03 Aligned_cols=71 Identities=17% Similarity=0.109 Sum_probs=48.7
Q ss_pred CCChHHHHHHHHHHHHhhcCCCCCCCCCCCCeeEEeCCCCCChhHHHHHHHHHHHHHhhhhhhhhhhhhcCcccccCCCC
Q 042849 660 TFNGPQLAAIQWAAIHTAAGTSSGMTKSPWPFTLVQGPPGTGKTHTVWGMLNVIHLVQYQHYYNSLLKKLAPESYKQPNE 739 (1019)
Q Consensus 660 ~LNeSQ~eAI~~Al~~~~~g~s~~~~k~~~~fsLIQGPPGTGKTkTI~~LL~~Lll~~~q~~~~sLlk~l~~~~~kq~~~ 739 (1019)
.+.+.|.+||..++. + .-.||++|.|+|||.+....+... +.+ .
T Consensus 7 ~~~~~Q~~~i~~~~~----~----------~~~l~~~~tGsGKT~~~~~~~~~~-----------~~~--------~--- 50 (556)
T 4a2p_A 7 KARSYQIELAQPAIN----G----------KNALICAPTGSGKTFVSILICEHH-----------FQN--------M--- 50 (556)
T ss_dssp -CCHHHHHHHHHHHT----T----------CCEEEECCTTSCHHHHHHHHHHHH-----------HHT--------C---
T ss_pred CCCHHHHHHHHHHHc----C----------CCEEEEcCCCChHHHHHHHHHHHH-----------HHh--------C---
Confidence 688999999997761 1 227999999999996644333211 000 0
Q ss_pred CCCCcccCCchhHHhhhhhhhhhccCCCCCCCCcEEEEecCchhHHHHHHHHHh
Q 042849 740 SNSDNVSMGSIDEVLQNMDQNLLRTLPKLCPKPRMLVCAPSNAATDELLTRVLD 793 (1019)
Q Consensus 740 ~~s~~~~~g~~~e~~~~~~~n~~r~~~k~~~k~RILVCAPSNaAVDEll~RLl~ 793 (1019)
....+.++||.+||.+-+.++..++.+
T Consensus 51 ---------------------------~~~~~~~~lil~P~~~L~~q~~~~~~~ 77 (556)
T 4a2p_A 51 ---------------------------PAGRKAKVVFLATKVPVYEQQKNVFKH 77 (556)
T ss_dssp ---------------------------CSSCCCCEEEECSSHHHHHHHHHHHHH
T ss_pred ---------------------------cccCCCeEEEEeCCHHHHHHHHHHHHH
Confidence 001267899999999999999888754
No 40
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=97.39 E-value=0.00077 Score=77.99 Aligned_cols=71 Identities=21% Similarity=0.102 Sum_probs=49.3
Q ss_pred CCChHHHHHHHHHHHHhhcCCCCCCCCCCCCeeEEeCCCCCChhHHHHHHHHHHHHHhhhhhhhhhhhhcCcccccCCCC
Q 042849 660 TFNGPQLAAIQWAAIHTAAGTSSGMTKSPWPFTLVQGPPGTGKTHTVWGMLNVIHLVQYQHYYNSLLKKLAPESYKQPNE 739 (1019)
Q Consensus 660 ~LNeSQ~eAI~~Al~~~~~g~s~~~~k~~~~fsLIQGPPGTGKTkTI~~LL~~Lll~~~q~~~~sLlk~l~~~~~kq~~~ 739 (1019)
++.+.|.+||..++. | .-.||++|.|+|||.+....+... +.+ .
T Consensus 4 ~~~~~Q~~~i~~~~~----~----------~~~l~~~~tGsGKT~~~~~~~~~~-----------~~~--------~--- 47 (555)
T 3tbk_A 4 KPRNYQLELALPAKK----G----------KNTIICAPTGCGKTFVSLLICEHH-----------LKK--------F--- 47 (555)
T ss_dssp CCCHHHHHHHHHHHT----T----------CCEEEECCTTSCHHHHHHHHHHHH-----------HHT--------C---
T ss_pred CCcHHHHHHHHHHhC----C----------CCEEEEeCCCChHHHHHHHHHHHH-----------HHh--------c---
Confidence 678899999997761 1 237999999999996654433211 110 0
Q ss_pred CCCCcccCCchhHHhhhhhhhhhccCCCCCCCCcEEEEecCchhHHHHHHHHHh
Q 042849 740 SNSDNVSMGSIDEVLQNMDQNLLRTLPKLCPKPRMLVCAPSNAATDELLTRVLD 793 (1019)
Q Consensus 740 ~~s~~~~~g~~~e~~~~~~~n~~r~~~k~~~k~RILVCAPSNaAVDEll~RLl~ 793 (1019)
....+.++||.+||.+-+.++...+.+
T Consensus 48 ---------------------------~~~~~~~~lil~P~~~L~~q~~~~~~~ 74 (555)
T 3tbk_A 48 ---------------------------PCGQKGKVVFFANQIPVYEQQATVFSR 74 (555)
T ss_dssp ---------------------------CSSCCCCEEEECSSHHHHHHHHHHHHH
T ss_pred ---------------------------ccCCCCEEEEEeCCHHHHHHHHHHHHH
Confidence 001267899999999999998888754
No 41
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=97.32 E-value=0.00041 Score=81.28 Aligned_cols=71 Identities=23% Similarity=0.212 Sum_probs=50.1
Q ss_pred CCChHHHHHHHHHHHHhhcCCCCCCCCCCCCeeEEeCCCCCChhHHHHHHHHHHHHHhhhhhhhhhhhhcCcccccCCCC
Q 042849 660 TFNGPQLAAIQWAAIHTAAGTSSGMTKSPWPFTLVQGPPGTGKTHTVWGMLNVIHLVQYQHYYNSLLKKLAPESYKQPNE 739 (1019)
Q Consensus 660 ~LNeSQ~eAI~~Al~~~~~g~s~~~~k~~~~fsLIQGPPGTGKTkTI~~LL~~Lll~~~q~~~~sLlk~l~~~~~kq~~~ 739 (1019)
.+++-|.+||..++. + ...-.||++|.|||||.+....+.. .+.
T Consensus 141 ~p~~~Q~~ai~~i~~----~--------~~~~~ll~apTGsGKT~~~~~~il~------------~l~------------ 184 (508)
T 3fho_A 141 XXXKIQEKALPLLLS----N--------PPRNMIGQSQSGTGKTAAFALTMLS------------RVD------------ 184 (508)
T ss_dssp ECCCTTSSSHHHHHC----S--------SCCCEEEECCSSTTSHHHHHHHHHH------------HSC------------
T ss_pred CcHHHHHHHHHHHHc----C--------CCCCEEEECCCCccHHHHHHHHHHH------------HHH------------
Confidence 588999999986651 1 1134799999999999764332210 000
Q ss_pred CCCCcccCCchhHHhhhhhhhhhccCCCCCCCCcEEEEecCchhHHHHHHHHHh
Q 042849 740 SNSDNVSMGSIDEVLQNMDQNLLRTLPKLCPKPRMLVCAPSNAATDELLTRVLD 793 (1019)
Q Consensus 740 ~~s~~~~~g~~~e~~~~~~~n~~r~~~k~~~k~RILVCAPSNaAVDEll~RLl~ 793 (1019)
....++++||.+|+.+.++++..++.+
T Consensus 185 ---------------------------~~~~~~~vLvl~P~~~L~~Q~~~~~~~ 211 (508)
T 3fho_A 185 ---------------------------ASVPKPQAICLAPSRELARQIMDVVTE 211 (508)
T ss_dssp ---------------------------TTCCSCCEEEECSCHHHHHHHHHHHHH
T ss_pred ---------------------------hCCCCceEEEEECcHHHHHHHHHHHHH
Confidence 012367999999999999999999865
No 42
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=97.31 E-value=0.0017 Score=80.28 Aligned_cols=80 Identities=19% Similarity=0.102 Sum_probs=54.5
Q ss_pred hhHhhhccCCChHHHHHHHHHHHHhhcCCCCCCCCCCCCeeEEeCCCCCChhHHHHHHHHHHHHHhhhhhhhhhhhhcCc
Q 042849 652 NFIDHLHRTFNGPQLAAIQWAAIHTAAGTSSGMTKSPWPFTLVQGPPGTGKTHTVWGMLNVIHLVQYQHYYNSLLKKLAP 731 (1019)
Q Consensus 652 ~l~~~L~~~LNeSQ~eAI~~Al~~~~~g~s~~~~k~~~~fsLIQGPPGTGKTkTI~~LL~~Lll~~~q~~~~sLlk~l~~ 731 (1019)
.+...+...|++.|.+||...+.....+ ...-.|||||.|+|||.+....+.. . +.
T Consensus 360 ~~~~~lpf~lt~~Q~~ai~~I~~~l~~~--------~~~~~Ll~a~TGSGKTlvall~il~--~----------l~---- 415 (780)
T 1gm5_A 360 EFIKSLPFKLTNAQKRAHQEIRNDMISE--------KPMNRLLQGDVGSGKTVVAQLAILD--N----------YE---- 415 (780)
T ss_dssp HHHHHSSSCCCHHHHHHHHHHHHHHHSS--------SCCCCEEECCSSSSHHHHHHHHHHH--H----------HH----
T ss_pred HHHHhCCCCCCHHHHHHHHHHHhhcccc--------CCCcEEEEcCCCCCHHHHHHHHHHH--H----------HH----
Confidence 4445566689999999999766321111 0123699999999999654332211 0 00
Q ss_pred ccccCCCCCCCCcccCCchhHHhhhhhhhhhccCCCCCCCCcEEEEecCchhHHHHHHHHHh
Q 042849 732 ESYKQPNESNSDNVSMGSIDEVLQNMDQNLLRTLPKLCPKPRMLVCAPSNAATDELLTRVLD 793 (1019)
Q Consensus 732 ~~~kq~~~~~s~~~~~g~~~e~~~~~~~n~~r~~~k~~~k~RILVCAPSNaAVDEll~RLl~ 793 (1019)
.+.++||.+||...+.++..++.+
T Consensus 416 --------------------------------------~g~qvlvlaPtr~La~Q~~~~l~~ 439 (780)
T 1gm5_A 416 --------------------------------------AGFQTAFMVPTSILAIQHYRRTVE 439 (780)
T ss_dssp --------------------------------------HTSCEEEECSCHHHHHHHHHHHHH
T ss_pred --------------------------------------cCCeEEEEeCcHHHHHHHHHHHHH
Confidence 157899999999999999998854
No 43
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=97.31 E-value=0.00036 Score=84.95 Aligned_cols=67 Identities=25% Similarity=0.261 Sum_probs=49.2
Q ss_pred cCCChHHHHHHHHHHHHhhcCCCCCCCCCCCCeeEEeCCCCCChhHHHHHHHHHHHHHhhhhhhhhhhhhcCcccccCCC
Q 042849 659 RTFNGPQLAAIQWAAIHTAAGTSSGMTKSPWPFTLVQGPPGTGKTHTVWGMLNVIHLVQYQHYYNSLLKKLAPESYKQPN 738 (1019)
Q Consensus 659 ~~LNeSQ~eAI~~Al~~~~~g~s~~~~k~~~~fsLIQGPPGTGKTkTI~~LL~~Lll~~~q~~~~sLlk~l~~~~~kq~~ 738 (1019)
..||+.|.+||..++. .+...||+||+|+|||..+...+.. .+..
T Consensus 29 ~~l~~~Q~~~i~~~~~-------------~~~~~lv~apTGsGKT~~~~l~il~-----------~~~~----------- 73 (715)
T 2va8_A 29 KKLNPPQTEAVKKGLL-------------EGNRLLLTSPTGSGKTLIAEMGIIS-----------FLLK----------- 73 (715)
T ss_dssp CBCCHHHHHHHHTTTT-------------TTCCEEEECCTTSCHHHHHHHHHHH-----------HHHH-----------
T ss_pred CCCCHHHHHHHHHHhc-------------CCCcEEEEcCCCCcHHHHHHHHHHH-----------HHHH-----------
Confidence 3689999999985331 1245899999999999766333210 0100
Q ss_pred CCCCCcccCCchhHHhhhhhhhhhccCCCCCCCCcEEEEecCchhHHHHHHHH
Q 042849 739 ESNSDNVSMGSIDEVLQNMDQNLLRTLPKLCPKPRMLVCAPSNAATDELLTRV 791 (1019)
Q Consensus 739 ~~~s~~~~~g~~~e~~~~~~~n~~r~~~k~~~k~RILVCAPSNaAVDEll~RL 791 (1019)
.+.++|+++|+.+.+.+++.++
T Consensus 74 -------------------------------~~~~il~i~P~r~La~q~~~~~ 95 (715)
T 2va8_A 74 -------------------------------NGGKAIYVTPLRALTNEKYLTF 95 (715)
T ss_dssp -------------------------------SCSEEEEECSCHHHHHHHHHHH
T ss_pred -------------------------------CCCeEEEEeCcHHHHHHHHHHH
Confidence 1569999999999999999998
No 44
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=97.21 E-value=0.0023 Score=75.15 Aligned_cols=75 Identities=16% Similarity=0.100 Sum_probs=49.3
Q ss_pred CCChHHHHHHHHHHHHhhcCCCCCCCCCCCCeeEEeCCCCCChhHHHHHHHHHHHHHhhhhhhhhhhhhcCcccccCCCC
Q 042849 660 TFNGPQLAAIQWAAIHTAAGTSSGMTKSPWPFTLVQGPPGTGKTHTVWGMLNVIHLVQYQHYYNSLLKKLAPESYKQPNE 739 (1019)
Q Consensus 660 ~LNeSQ~eAI~~Al~~~~~g~s~~~~k~~~~fsLIQGPPGTGKTkTI~~LL~~Lll~~~q~~~~sLlk~l~~~~~kq~~~ 739 (1019)
.+++-|.+||..++. + ...-.||++|.|||||.+....+ +.. +++. +
T Consensus 94 ~~~~~Q~~~i~~~l~----~--------~~~~~lv~apTGsGKTl~~~lpi--l~~---------l~~~------~---- 140 (563)
T 3i5x_A 94 GLTPVQQKTIKPILS----S--------EDHDVIARAKTGTGKTFAFLIPI--FQH---------LINT------K---- 140 (563)
T ss_dssp SCCHHHHHHHHHHHS----S--------SSEEEEEECCTTSCHHHHHHHHH--HHH---------HHHT------T----
T ss_pred CCCHHHHHHHHHHhc----C--------CCCeEEEECCCCCCccHHHHHHH--HHH---------HHhc------c----
Confidence 589999999987651 1 12347999999999996432221 110 1110 0
Q ss_pred CCCCcccCCchhHHhhhhhhhhhccCCCCCCCCcEEEEecCchhHHHHHHHHHh
Q 042849 740 SNSDNVSMGSIDEVLQNMDQNLLRTLPKLCPKPRMLVCAPSNAATDELLTRVLD 793 (1019)
Q Consensus 740 ~~s~~~~~g~~~e~~~~~~~n~~r~~~k~~~k~RILVCAPSNaAVDEll~RLl~ 793 (1019)
.......++||.+||.+-+.++..++.+
T Consensus 141 --------------------------~~~~~~~~~lil~Ptr~La~Q~~~~~~~ 168 (563)
T 3i5x_A 141 --------------------------FDSQYMVKAVIVAPTRDLALQIEAEVKK 168 (563)
T ss_dssp --------------------------TSSTTSCCEEEECSSHHHHHHHHHHHHH
T ss_pred --------------------------ccccCCeeEEEEcCcHHHHHHHHHHHHH
Confidence 0011356899999999999999988854
No 45
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=97.19 E-value=0.0021 Score=82.42 Aligned_cols=68 Identities=21% Similarity=0.269 Sum_probs=49.7
Q ss_pred ccCCChHHHHHHHHHHHHhhcCCCCCCCCCCCCeeEEeCCCCCChhHHHHHHHHHHHHHhhhhhhhhhhhhcCcccccCC
Q 042849 658 HRTFNGPQLAAIQWAAIHTAAGTSSGMTKSPWPFTLVQGPPGTGKTHTVWGMLNVIHLVQYQHYYNSLLKKLAPESYKQP 737 (1019)
Q Consensus 658 ~~~LNeSQ~eAI~~Al~~~~~g~s~~~~k~~~~fsLIQGPPGTGKTkTI~~LL~~Lll~~~q~~~~sLlk~l~~~~~kq~ 737 (1019)
...+++-|.+||..++. | .-.||++|.|+|||.. .++.++.. +
T Consensus 76 gf~pt~iQ~~ai~~il~----g----------~dvlv~ApTGSGKTl~--~l~~il~~----------~----------- 118 (1104)
T 4ddu_A 76 GKDLTGYQRLWAKRIVQ----G----------KSFTMVAPTGVGKTTF--GMMTALWL----------A----------- 118 (1104)
T ss_dssp SSCCCHHHHHHHHHHTT----T----------CCEEECCSTTCCHHHH--HHHHHHHH----------H-----------
T ss_pred CCCCCHHHHHHHHHHHc----C----------CCEEEEeCCCCcHHHH--HHHHHHHH----------H-----------
Confidence 34688999999987651 1 2269999999999973 23221110 0
Q ss_pred CCCCCCcccCCchhHHhhhhhhhhhccCCCCCCCCcEEEEecCchhHHHHHHHHHh
Q 042849 738 NESNSDNVSMGSIDEVLQNMDQNLLRTLPKLCPKPRMLVCAPSNAATDELLTRVLD 793 (1019)
Q Consensus 738 ~~~~s~~~~~g~~~e~~~~~~~n~~r~~~k~~~k~RILVCAPSNaAVDEll~RLl~ 793 (1019)
..+.++||.+||-..+.++..++.+
T Consensus 119 -------------------------------~~~~~~Lil~PtreLa~Q~~~~l~~ 143 (1104)
T 4ddu_A 119 -------------------------------RKGKKSALVFPTVTLVKQTLERLQK 143 (1104)
T ss_dssp -------------------------------TTTCCEEEEESSHHHHHHHHHHHHT
T ss_pred -------------------------------hcCCeEEEEechHHHHHHHHHHHHH
Confidence 1267999999999999999999965
No 46
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=97.12 E-value=0.0031 Score=74.79 Aligned_cols=75 Identities=16% Similarity=0.070 Sum_probs=49.4
Q ss_pred CCChHHHHHHHHHHHHhhcCCCCCCCCCCCCeeEEeCCCCCChhHHHHHHHHHHHHHhhhhhhhhhhhhcCcccccCCCC
Q 042849 660 TFNGPQLAAIQWAAIHTAAGTSSGMTKSPWPFTLVQGPPGTGKTHTVWGMLNVIHLVQYQHYYNSLLKKLAPESYKQPNE 739 (1019)
Q Consensus 660 ~LNeSQ~eAI~~Al~~~~~g~s~~~~k~~~~fsLIQGPPGTGKTkTI~~LL~~Lll~~~q~~~~sLlk~l~~~~~kq~~~ 739 (1019)
.+++-|.+||..++. + ...-.||++|.|||||.+....+.. . +.+. +
T Consensus 43 ~~~~~Q~~~i~~il~----~--------~~~dvlv~apTGsGKTl~~~lpil~--~---------l~~~------~---- 89 (579)
T 3sqw_A 43 GLTPVQQKTIKPILS----S--------EDHDVIARAKTGTGKTFAFLIPIFQ--H---------LINT------K---- 89 (579)
T ss_dssp SCCHHHHHHHHHHHC----S--------SSEEEEEECCTTSCHHHHHHHHHHH--H---------HHHT------T----
T ss_pred CCCHHHHHHHHHHHc----c--------CCCeEEEEcCCCcHHHHHHHHHHHH--H---------HHhc------c----
Confidence 588999999987661 1 1234799999999999643322211 0 1110 0
Q ss_pred CCCCcccCCchhHHhhhhhhhhhccCCCCCCCCcEEEEecCchhHHHHHHHHHh
Q 042849 740 SNSDNVSMGSIDEVLQNMDQNLLRTLPKLCPKPRMLVCAPSNAATDELLTRVLD 793 (1019)
Q Consensus 740 ~~s~~~~~g~~~e~~~~~~~n~~r~~~k~~~k~RILVCAPSNaAVDEll~RLl~ 793 (1019)
.......++||++||..-+.++..++.+
T Consensus 90 --------------------------~~~~~~~~~lvl~Ptr~La~Q~~~~~~~ 117 (579)
T 3sqw_A 90 --------------------------FDSQYMVKAVIVAPTRDLALQIEAEVKK 117 (579)
T ss_dssp --------------------------TSSTTSCCEEEECSSHHHHHHHHHHHHH
T ss_pred --------------------------ccccCCCeEEEEcchHHHHHHHHHHHHH
Confidence 0012357999999999999999888754
No 47
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=97.11 E-value=0.00072 Score=82.45 Aligned_cols=67 Identities=22% Similarity=0.262 Sum_probs=48.9
Q ss_pred cCCChHHHHHHHHHHHHhhcCCCCCCCCCCCCeeEEeCCCCCChhHHHHH-HHHHHHHHhhhhhhhhhhhhcCcccccCC
Q 042849 659 RTFNGPQLAAIQWAAIHTAAGTSSGMTKSPWPFTLVQGPPGTGKTHTVWG-MLNVIHLVQYQHYYNSLLKKLAPESYKQP 737 (1019)
Q Consensus 659 ~~LNeSQ~eAI~~Al~~~~~g~s~~~~k~~~~fsLIQGPPGTGKTkTI~~-LL~~Lll~~~q~~~~sLlk~l~~~~~kq~ 737 (1019)
..|++.|.+||..++. ...-.||+||.|+|||.+... ++..+ +.
T Consensus 22 ~~l~~~Q~~~i~~~~~-------------~~~~~lv~apTGsGKT~~~~l~il~~~------------~~---------- 66 (720)
T 2zj8_A 22 ESFYPPQAEALKSGIL-------------EGKNALISIPTASGKTLIAEIAMVHRI------------LT---------- 66 (720)
T ss_dssp CBCCHHHHHHHTTTGG-------------GTCEEEEECCGGGCHHHHHHHHHHHHH------------HH----------
T ss_pred CCCCHHHHHHHHHHhc-------------CCCcEEEEcCCccHHHHHHHHHHHHHH------------Hh----------
Confidence 3689999999985331 124589999999999975422 22111 10
Q ss_pred CCCCCCcccCCchhHHhhhhhhhhhccCCCCCCCCcEEEEecCchhHHHHHHHHH
Q 042849 738 NESNSDNVSMGSIDEVLQNMDQNLLRTLPKLCPKPRMLVCAPSNAATDELLTRVL 792 (1019)
Q Consensus 738 ~~~~s~~~~~g~~~e~~~~~~~n~~r~~~k~~~k~RILVCAPSNaAVDEll~RLl 792 (1019)
.+.++|+++|+-+.+.++..++.
T Consensus 67 --------------------------------~~~~~l~i~P~raLa~q~~~~~~ 89 (720)
T 2zj8_A 67 --------------------------------QGGKAVYIVPLKALAEEKFQEFQ 89 (720)
T ss_dssp --------------------------------HCSEEEEECSSGGGHHHHHHHTG
T ss_pred --------------------------------CCCEEEEEcCcHHHHHHHHHHHH
Confidence 15699999999999999999983
No 48
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=97.09 E-value=0.0025 Score=78.73 Aligned_cols=72 Identities=17% Similarity=0.120 Sum_probs=49.5
Q ss_pred cCCChHHHHHHHHHHHHhhcCCCCCCCCCCCCeeEEeCCCCCChhHHHHHHHHHHHHHhhhhhhhhhhhhcCcccccCCC
Q 042849 659 RTFNGPQLAAIQWAAIHTAAGTSSGMTKSPWPFTLVQGPPGTGKTHTVWGMLNVIHLVQYQHYYNSLLKKLAPESYKQPN 738 (1019)
Q Consensus 659 ~~LNeSQ~eAI~~Al~~~~~g~s~~~~k~~~~fsLIQGPPGTGKTkTI~~LL~~Lll~~~q~~~~sLlk~l~~~~~kq~~ 738 (1019)
..+.+.|.+||..++. | .-.||++|.|+|||.+....+... +.+ .
T Consensus 247 ~~l~~~Q~~~i~~~l~----~----------~~~ll~~~TGsGKTl~~~~~i~~~-----------l~~--------~-- 291 (797)
T 4a2q_A 247 KKARSYQIELAQPAIN----G----------KNALICAPTGSGKTFVSILICEHH-----------FQN--------M-- 291 (797)
T ss_dssp -CCCHHHHHHHHHHHT----T----------CCEEEECCTTSCHHHHHHHHHHHH-----------HHT--------C--
T ss_pred CCCCHHHHHHHHHHHh----C----------CCEEEEeCCCChHHHHHHHHHHHH-----------HHh--------c--
Confidence 4788999999997751 1 227999999999996544433211 100 0
Q ss_pred CCCCCcccCCchhHHhhhhhhhhhccCCCCCCCCcEEEEecCchhHHHHHHHHHh
Q 042849 739 ESNSDNVSMGSIDEVLQNMDQNLLRTLPKLCPKPRMLVCAPSNAATDELLTRVLD 793 (1019)
Q Consensus 739 ~~~s~~~~~g~~~e~~~~~~~n~~r~~~k~~~k~RILVCAPSNaAVDEll~RLl~ 793 (1019)
....+.++||.+|+.+-+.++..++.+
T Consensus 292 ----------------------------~~~~~~~~Lvl~Pt~~L~~Q~~~~~~~ 318 (797)
T 4a2q_A 292 ----------------------------PAGRKAKVVFLATKVPVYEQQKNVFKH 318 (797)
T ss_dssp ----------------------------CSSCCCCEEEECSSHHHHHHHHHHHHH
T ss_pred ----------------------------cccCCCeEEEEeCCHHHHHHHHHHHHH
Confidence 001267999999999999999888754
No 49
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=97.09 E-value=0.00071 Score=82.25 Aligned_cols=65 Identities=18% Similarity=0.113 Sum_probs=47.8
Q ss_pred cCCChHHHHHHHHHHHHhhcCCCCCCCCCCCCeeEEeCCCCCChhHHHHHHHHHHHHHhhhhhhhhhhhhcCcccccCCC
Q 042849 659 RTFNGPQLAAIQWAAIHTAAGTSSGMTKSPWPFTLVQGPPGTGKTHTVWGMLNVIHLVQYQHYYNSLLKKLAPESYKQPN 738 (1019)
Q Consensus 659 ~~LNeSQ~eAI~~Al~~~~~g~s~~~~k~~~~fsLIQGPPGTGKTkTI~~LL~~Lll~~~q~~~~sLlk~l~~~~~kq~~ 738 (1019)
..||+.|.+||...+ ...-.||+||+|+|||......+.. .+.
T Consensus 24 ~~l~~~Q~~~i~~i~--------------~~~~~lv~apTGsGKT~~~~l~il~-----------~~~------------ 66 (702)
T 2p6r_A 24 EELFPPQAEAVEKVF--------------SGKNLLLAMPTAAGKTLLAEMAMVR-----------EAI------------ 66 (702)
T ss_dssp -CCCCCCHHHHHHHT--------------TCSCEEEECSSHHHHHHHHHHHHHH-----------HHH------------
T ss_pred CCCCHHHHHHHHHHh--------------CCCcEEEEcCCccHHHHHHHHHHHH-----------HHH------------
Confidence 368999999998632 1245899999999999765332210 000
Q ss_pred CCCCCcccCCchhHHhhhhhhhhhccCCCCCCCCcEEEEecCchhHHHHHHHH
Q 042849 739 ESNSDNVSMGSIDEVLQNMDQNLLRTLPKLCPKPRMLVCAPSNAATDELLTRV 791 (1019)
Q Consensus 739 ~~~s~~~~~g~~~e~~~~~~~n~~r~~~k~~~k~RILVCAPSNaAVDEll~RL 791 (1019)
.+.++|+++|+.+.+.+++.++
T Consensus 67 -------------------------------~~~~~l~i~P~r~La~q~~~~~ 88 (702)
T 2p6r_A 67 -------------------------------KGGKSLYVVPLRALAGEKYESF 88 (702)
T ss_dssp -------------------------------TTCCEEEEESSHHHHHHHHHHH
T ss_pred -------------------------------hCCcEEEEeCcHHHHHHHHHHH
Confidence 1569999999999999999998
No 50
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=97.03 E-value=0.0012 Score=79.54 Aligned_cols=72 Identities=18% Similarity=0.100 Sum_probs=50.3
Q ss_pred CCChHHHHHHHHHHHHhhcCCCCCCCCCCCCeeEEeCCCCCChhHHHHHHHHHHHHHhhhhhhhhhhhhcCcccccCCCC
Q 042849 660 TFNGPQLAAIQWAAIHTAAGTSSGMTKSPWPFTLVQGPPGTGKTHTVWGMLNVIHLVQYQHYYNSLLKKLAPESYKQPNE 739 (1019)
Q Consensus 660 ~LNeSQ~eAI~~Al~~~~~g~s~~~~k~~~~fsLIQGPPGTGKTkTI~~LL~~Lll~~~q~~~~sLlk~l~~~~~kq~~~ 739 (1019)
.|.+.|.+||..++. | .-.||++|.|+|||.+...++..++. +.
T Consensus 7 ~l~~~Q~~~i~~il~----g----------~~~ll~~~TGsGKTl~~~~~i~~~l~-----------~~----------- 50 (699)
T 4gl2_A 7 QLRPYQMEVAQPALE----G----------KNIIICLPTGCGKTRVAVYIAKDHLD-----------KK----------- 50 (699)
T ss_dssp CCCHHHHHHHHHHHS----S----------CCEEECCCTTSCHHHHHHHHHHHHHH-----------HH-----------
T ss_pred CccHHHHHHHHHHHh----C----------CCEEEEcCCCCcHHHHHHHHHHHHHH-----------hc-----------
Confidence 788999999998761 1 23799999999999765554432110 00
Q ss_pred CCCCcccCCchhHHhhhhhhhhhccCCCCCCCCcEEEEecCchhHHHH-HHHHHh
Q 042849 740 SNSDNVSMGSIDEVLQNMDQNLLRTLPKLCPKPRMLVCAPSNAATDEL-LTRVLD 793 (1019)
Q Consensus 740 ~~s~~~~~g~~~e~~~~~~~n~~r~~~k~~~k~RILVCAPSNaAVDEl-l~RLl~ 793 (1019)
.. ...+.++||.+|+.+-+.+. ..++.+
T Consensus 51 -----------------~~---------~~~~~~vlvl~P~~~L~~Q~~~~~l~~ 79 (699)
T 4gl2_A 51 -----------------KK---------ASEPGKVIVLVNKVLLVEQLFRKEFQP 79 (699)
T ss_dssp -----------------HH---------HTCCCCBCCEESCSHHHHHHHHHTHHH
T ss_pred -----------------cc---------cCCCCeEEEEECCHHHHHHHHHHHHHH
Confidence 00 01247899999999999999 887754
No 51
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=97.03 E-value=0.0063 Score=69.64 Aligned_cols=24 Identities=8% Similarity=0.398 Sum_probs=20.9
Q ss_pred CCCcEEEEecCchhHHHHHHHHHh
Q 042849 770 PKPRMLVCAPSNAATDELLTRVLD 793 (1019)
Q Consensus 770 ~k~RILVCAPSNaAVDEll~RLl~ 793 (1019)
.++++||++||..-+.++..++.+
T Consensus 128 ~~~~~lil~PtreLa~Q~~~~~~~ 151 (434)
T 2db3_A 128 GRPQVVIVSPTRELAIQIFNEARK 151 (434)
T ss_dssp TCCSEEEECSSHHHHHHHHHHHHH
T ss_pred CCccEEEEecCHHHHHHHHHHHHH
Confidence 367999999999999999888764
No 52
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=96.99 E-value=0.0019 Score=81.84 Aligned_cols=41 Identities=22% Similarity=0.133 Sum_probs=32.2
Q ss_pred cCCChHHHHHHHHHHHHhhcCCCCCCCCCCCCeeEEeCCCCCChhHHHHHHHH
Q 042849 659 RTFNGPQLAAIQWAAIHTAAGTSSGMTKSPWPFTLVQGPPGTGKTHTVWGMLN 711 (1019)
Q Consensus 659 ~~LNeSQ~eAI~~Al~~~~~g~s~~~~k~~~~fsLIQGPPGTGKTkTI~~LL~ 711 (1019)
..|.+.|.+||..++.+ ...-.||.+|.|+|||.+...++.
T Consensus 152 ~~LrpyQ~eav~~~l~~------------~~~~~LLad~tGlGKTi~Ai~~i~ 192 (968)
T 3dmq_A 152 TSLIPHQLNIAHDVGRR------------HAPRVLLADEVGLGKTIEAGMILH 192 (968)
T ss_dssp SCCCHHHHHHHHHHHHS------------SSCEEEECCCTTSCHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHh------------cCCCEEEECCCCCcHHHHHHHHHH
Confidence 47899999999987731 124479999999999988766665
No 53
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=96.96 E-value=0.003 Score=76.07 Aligned_cols=72 Identities=19% Similarity=0.073 Sum_probs=48.9
Q ss_pred cCCChHHHHHHHHHHHHhhcCCCCCCCCCCCCeeEEeCCCCCChhHHHHHHHHHHHHHhhhhhhhhhhhhcCcccccCCC
Q 042849 659 RTFNGPQLAAIQWAAIHTAAGTSSGMTKSPWPFTLVQGPPGTGKTHTVWGMLNVIHLVQYQHYYNSLLKKLAPESYKQPN 738 (1019)
Q Consensus 659 ~~LNeSQ~eAI~~Al~~~~~g~s~~~~k~~~~fsLIQGPPGTGKTkTI~~LL~~Lll~~~q~~~~sLlk~l~~~~~kq~~ 738 (1019)
..+.+-|.+||..++. | .-.||++|.|+|||.....++... +.. .
T Consensus 12 ~~lr~~Q~~~i~~~l~----g----------~~~iv~~~TGsGKTl~~~~~i~~~-----------l~~--------~-- 56 (696)
T 2ykg_A 12 FKPRNYQLELALPAMK----G----------KNTIICAPTGCGKTFVSLLICEHH-----------LKK--------F-- 56 (696)
T ss_dssp -CCCHHHHHHHHHHHT----T----------CCEEEECCTTSSHHHHHHHHHHHH-----------HHH--------S--
T ss_pred CCccHHHHHHHHHHHc----C----------CCEEEEcCCCchHHHHHHHHHHHH-----------HHh--------C--
Confidence 4689999999998761 1 237999999999997544333210 000 0
Q ss_pred CCCCCcccCCchhHHhhhhhhhhhccCCCCCCCCcEEEEecCchhHHHHHHHHHh
Q 042849 739 ESNSDNVSMGSIDEVLQNMDQNLLRTLPKLCPKPRMLVCAPSNAATDELLTRVLD 793 (1019)
Q Consensus 739 ~~~s~~~~~g~~~e~~~~~~~n~~r~~~k~~~k~RILVCAPSNaAVDEll~RLl~ 793 (1019)
....+.++||.+||-+-+.+....+.+
T Consensus 57 ----------------------------~~~~~~~~lvl~Pt~~L~~Q~~~~~~~ 83 (696)
T 2ykg_A 57 ----------------------------PQGQKGKVVFFANQIPVYEQNKSVFSK 83 (696)
T ss_dssp ----------------------------CTTCCCCEEEECSSHHHHHHHHHHHHH
T ss_pred ----------------------------ccCCCCeEEEEECCHHHHHHHHHHHHH
Confidence 001247999999999999988888754
No 54
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=96.91 E-value=0.011 Score=70.05 Aligned_cols=41 Identities=20% Similarity=0.137 Sum_probs=28.7
Q ss_pred HHhccCcEEEEecccchhHHHhh-h--cCCCCEEEEcCCCCCCc
Q 042849 941 SFANEAEIVFTTVSSSGRKLFSR-L--THGFDMVVIDEAAQASE 981 (1019)
Q Consensus 941 ~iL~eA~IV~sTlSssg~~ll~~-l--~~~FDvVIIDEAAQa~E 981 (1019)
.....|+||+||..-........ + ....++||||||-++.+
T Consensus 144 ~~~~~adIVV~~~~~l~~~~~~~~~~~~~~~~~vIiDEAHnl~d 187 (551)
T 3crv_A 144 NSLYKADVIALTYPYFFIDRYREFIDIDLREYMIVIDEAHNLDK 187 (551)
T ss_dssp HHGGGCSEEEEETHHHHCHHHHTTSCCCSTTEEEEETTGGGGGG
T ss_pred hhhhcCCEEEeCchHhcCHHHHHhcCCCcCCeEEEEecccchHH
Confidence 34578999999987544433222 1 13567899999998877
No 55
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=96.88 E-value=0.0052 Score=71.09 Aligned_cols=58 Identities=22% Similarity=0.200 Sum_probs=35.9
Q ss_pred ccCcEEEEecccchhHHHhhhcCCCCEEEEcCCCCCCccccc-----cccccCCCeEEEecCCCC
Q 042849 944 NEAEIVFTTVSSSGRKLFSRLTHGFDMVVIDEAAQASEVGVL-----PPLSLGAARCVLGGGSSA 1003 (1019)
Q Consensus 944 ~eA~IV~sTlSssg~~ll~~l~~~FDvVIIDEAAQa~E~stL-----IPL~~g~kr~ILVGDpkQ 1003 (1019)
...+||++|......... .....|++||||||-.+....+. ..| ....++.|-|=|-|
T Consensus 127 ~~~~ivi~t~~~l~~~~~-l~~~~~~~vIvDEaH~~kn~~~~~~~~l~~l-~~~~~l~LTaTP~~ 189 (500)
T 1z63_A 127 EDYDIILTTYAVLLRDTR-LKEVEWKYIVIDEAQNIKNPQTKIFKAVKEL-KSKYRIALTGTPIE 189 (500)
T ss_dssp GGSSEEEEEHHHHTTCHH-HHTCCEEEEEEETGGGGSCTTSHHHHHHHTS-CEEEEEEECSSCST
T ss_pred cCCcEEEeeHHHHhccch-hcCCCcCEEEEeCccccCCHhHHHHHHHHhh-ccCcEEEEecCCCC
Confidence 356899998876544322 12348999999999887655421 122 12346777777644
No 56
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=96.87 E-value=0.0011 Score=85.76 Aligned_cols=71 Identities=24% Similarity=0.248 Sum_probs=51.1
Q ss_pred cCCChHHHHHHHHHHHHhhcCCCCCCCCCCCCeeEEeCCCCCChhHHHHHHHHHHHHHhhhhhhhhhhhhcCcccccCCC
Q 042849 659 RTFNGPQLAAIQWAAIHTAAGTSSGMTKSPWPFTLVQGPPGTGKTHTVWGMLNVIHLVQYQHYYNSLLKKLAPESYKQPN 738 (1019)
Q Consensus 659 ~~LNeSQ~eAI~~Al~~~~~g~s~~~~k~~~~fsLIQGPPGTGKTkTI~~LL~~Lll~~~q~~~~sLlk~l~~~~~kq~~ 738 (1019)
..||+.|.+||.. +.+-.||.|+||||||+|++.=|.-+ +.. .
T Consensus 9 ~~~t~eQ~~~i~~----------------~~~~~~v~a~AGSGKT~vl~~ri~~l------------l~~-------~-- 51 (1232)
T 3u4q_A 9 STWTDDQWNAIVS----------------TGQDILVAAAAGSGKTAVLVERMIRK------------ITA-------E-- 51 (1232)
T ss_dssp -CCCHHHHHHHHC----------------CSSCEEEEECTTCCHHHHHHHHHHHH------------HSC-------S--
T ss_pred CCCCHHHHHHHhC----------------CCCCEEEEecCCCcHHHHHHHHHHHH------------Hhc-------C--
Confidence 4799999999972 12457999999999999987744321 110 0
Q ss_pred CCCCCcccCCchhHHhhhhhhhhhccCCCCCCCCcEEEEecCchhHHHHHHHHHh
Q 042849 739 ESNSDNVSMGSIDEVLQNMDQNLLRTLPKLCPKPRMLVCAPSNAATDELLTRVLD 793 (1019)
Q Consensus 739 ~~~s~~~~~g~~~e~~~~~~~n~~r~~~k~~~k~RILVCAPSNaAVDEll~RLl~ 793 (1019)
.......+||+.++||+|.+|+..||..
T Consensus 52 ---------------------------~~~~~~~~il~~Tft~~aa~e~~~ri~~ 79 (1232)
T 3u4q_A 52 ---------------------------ENPIDVDRLLVVTFTNASAAEMKHRIAE 79 (1232)
T ss_dssp ---------------------------SSCCCGGGEEEECSSHHHHHHHHHHHHH
T ss_pred ---------------------------CCCCCccceEEEeccHHHHHHHHHHHHH
Confidence 0001245899999999999999999854
No 57
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=96.80 E-value=0.0054 Score=78.99 Aligned_cols=80 Identities=19% Similarity=0.080 Sum_probs=54.5
Q ss_pred hhHhhhccCCChHHHHHHHHHHHHhhcCCCCCCCCCCCCeeEEeCCCCCChhHHHHHHHHHHHHHhhhhhhhhhhhhcCc
Q 042849 652 NFIDHLHRTFNGPQLAAIQWAAIHTAAGTSSGMTKSPWPFTLVQGPPGTGKTHTVWGMLNVIHLVQYQHYYNSLLKKLAP 731 (1019)
Q Consensus 652 ~l~~~L~~~LNeSQ~eAI~~Al~~~~~g~s~~~~k~~~~fsLIQGPPGTGKTkTI~~LL~~Lll~~~q~~~~sLlk~l~~ 731 (1019)
.+...+...+++-|.+||..++.....|. ..-.||+||.|+|||.+....+. .. +
T Consensus 595 ~~~~~f~~~~t~~Q~~ai~~il~~~~~g~--------p~d~ll~~~TGsGKT~val~aa~--~~----------~----- 649 (1151)
T 2eyq_A 595 LFCDSFPFETTPDQAQAINAVLSDMCQPL--------AMDRLVCGDVGFGKTEVAMRAAF--LA----------V----- 649 (1151)
T ss_dssp HHHHTCCSCCCHHHHHHHHHHHHHHHSSS--------CCEEEEECCCCTTTHHHHHHHHH--HH----------H-----
T ss_pred HHHHhCCCCCCHHHHHHHHHHHHHHhcCC--------cCcEEEECCCCCCHHHHHHHHHH--HH----------H-----
Confidence 34445566789999999997764221111 11479999999999965432221 10 0
Q ss_pred ccccCCCCCCCCcccCCchhHHhhhhhhhhhccCCCCCCCCcEEEEecCchhHHHHHHHHHh
Q 042849 732 ESYKQPNESNSDNVSMGSIDEVLQNMDQNLLRTLPKLCPKPRMLVCAPSNAATDELLTRVLD 793 (1019)
Q Consensus 732 ~~~kq~~~~~s~~~~~g~~~e~~~~~~~n~~r~~~k~~~k~RILVCAPSNaAVDEll~RLl~ 793 (1019)
..++++||.+||...+.+...++.+
T Consensus 650 -------------------------------------~~g~~vlvlvPt~~La~Q~~~~~~~ 674 (1151)
T 2eyq_A 650 -------------------------------------DNHKQVAVLVPTTLLAQQHYDNFRD 674 (1151)
T ss_dssp -------------------------------------TTTCEEEEECSSHHHHHHHHHHHHH
T ss_pred -------------------------------------HhCCeEEEEechHHHHHHHHHHHHH
Confidence 0256999999999999999999864
No 58
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=96.78 E-value=0.0034 Score=67.42 Aligned_cols=68 Identities=15% Similarity=0.142 Sum_probs=51.0
Q ss_pred cCCChHHHHHHHHHHHHhhcCCCCCCCCCCCCeeEEeCCCCCChhHHHHHHHHHHHHHhhhhhhhhhhhhcCcccccCCC
Q 042849 659 RTFNGPQLAAIQWAAIHTAAGTSSGMTKSPWPFTLVQGPPGTGKTHTVWGMLNVIHLVQYQHYYNSLLKKLAPESYKQPN 738 (1019)
Q Consensus 659 ~~LNeSQ~eAI~~Al~~~~~g~s~~~~k~~~~fsLIQGPPGTGKTkTI~~LL~~Lll~~~q~~~~sLlk~l~~~~~kq~~ 738 (1019)
..+++.|.+||..++.+ .-.||++|+|+|||.+...++... +.
T Consensus 112 ~~l~~~Q~~ai~~~l~~--------------~~~ll~~~tGsGKT~~~~~~~~~~------------~~----------- 154 (282)
T 1rif_A 112 IEPHWYQKDAVFEGLVN--------------RRRILNLPTSAGRSLIQALLARYY------------LE----------- 154 (282)
T ss_dssp CCCCHHHHHHHHHHHHH--------------SEEEECCCTTSCHHHHHHHHHHHH------------HH-----------
T ss_pred cCccHHHHHHHHHHHhc--------------CCeEEEcCCCCCcHHHHHHHHHHH------------HH-----------
Confidence 37899999999987632 236899999999998775554311 00
Q ss_pred CCCCCcccCCchhHHhhhhhhhhhccCCCCCCCCcEEEEecCchhHHHHHHHHHh
Q 042849 739 ESNSDNVSMGSIDEVLQNMDQNLLRTLPKLCPKPRMLVCAPSNAATDELLTRVLD 793 (1019)
Q Consensus 739 ~~~s~~~~~g~~~e~~~~~~~n~~r~~~k~~~k~RILVCAPSNaAVDEll~RLl~ 793 (1019)
....++||++|+.+-+++...++.+
T Consensus 155 ------------------------------~~~~~~lil~Pt~~L~~q~~~~l~~ 179 (282)
T 1rif_A 155 ------------------------------NYEGKILIIVPTTALTTQMADDFVD 179 (282)
T ss_dssp ------------------------------HCSSEEEEECSSHHHHHHHHHHHHH
T ss_pred ------------------------------cCCCeEEEEECCHHHHHHHHHHHHH
Confidence 0134899999999999999999865
No 59
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=96.66 E-value=0.0054 Score=72.26 Aligned_cols=66 Identities=21% Similarity=0.236 Sum_probs=48.2
Q ss_pred cCCChHHHHHHHHHHHHhhcCCCCCCCCCCCCeeEEeCCCCCChhHHHHHHHHHHHHHhhhhhhhhhhhhcCcccccCCC
Q 042849 659 RTFNGPQLAAIQWAAIHTAAGTSSGMTKSPWPFTLVQGPPGTGKTHTVWGMLNVIHLVQYQHYYNSLLKKLAPESYKQPN 738 (1019)
Q Consensus 659 ~~LNeSQ~eAI~~Al~~~~~g~s~~~~k~~~~fsLIQGPPGTGKTkTI~~LL~~Lll~~~q~~~~sLlk~l~~~~~kq~~ 738 (1019)
..|.+-|.+||..++. | .-.||.+|.|+|||.+ .++-++ +
T Consensus 24 ~~~r~~Q~~~i~~il~----g----------~d~lv~apTGsGKTl~--~~lp~l------------~------------ 63 (523)
T 1oyw_A 24 QQFRPGQEEIIDTVLS----G----------RDCLVVMPTGGGKSLC--YQIPAL------------L------------ 63 (523)
T ss_dssp SSCCTTHHHHHHHHHT----T----------CCEEEECSCHHHHHHH--HHHHHH------------H------------
T ss_pred CCCCHHHHHHHHHHHc----C----------CCEEEECCCCcHHHHH--HHHHHH------------H------------
Confidence 3678999999997661 1 2379999999999942 223211 0
Q ss_pred CCCCCcccCCchhHHhhhhhhhhhccCCCCCCCCcEEEEecCchhHHHHHHHHHhcC
Q 042849 739 ESNSDNVSMGSIDEVLQNMDQNLLRTLPKLCPKPRMLVCAPSNAATDELLTRVLDRG 795 (1019)
Q Consensus 739 ~~~s~~~~~g~~~e~~~~~~~n~~r~~~k~~~k~RILVCAPSNaAVDEll~RLl~~G 795 (1019)
...++||++|+.+-+.+.+.+|...|
T Consensus 64 -------------------------------~~g~~lvi~P~~aL~~q~~~~l~~~g 89 (523)
T 1oyw_A 64 -------------------------------LNGLTVVVSPLISLMKDQVDQLQANG 89 (523)
T ss_dssp -------------------------------SSSEEEEECSCHHHHHHHHHHHHHTT
T ss_pred -------------------------------hCCCEEEECChHHHHHHHHHHHHHcC
Confidence 13579999999999999999986543
No 60
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=96.62 E-value=0.0088 Score=71.73 Aligned_cols=65 Identities=23% Similarity=0.268 Sum_probs=48.0
Q ss_pred CCChHHHHHHHHHHHHhhcCCCCCCCCCCCCeeEEeCCCCCChhHHHHHHHHHHHHHhhhhhhhhhhhhcCcccccCCCC
Q 042849 660 TFNGPQLAAIQWAAIHTAAGTSSGMTKSPWPFTLVQGPPGTGKTHTVWGMLNVIHLVQYQHYYNSLLKKLAPESYKQPNE 739 (1019)
Q Consensus 660 ~LNeSQ~eAI~~Al~~~~~g~s~~~~k~~~~fsLIQGPPGTGKTkTI~~LL~~Lll~~~q~~~~sLlk~l~~~~~kq~~~ 739 (1019)
.|.+-|.+||..++. | .-.||.+|.|+|||.+. ++-++ +
T Consensus 44 ~~rp~Q~~~i~~il~----g----------~d~lv~~pTGsGKTl~~--~lpal------------~------------- 82 (591)
T 2v1x_A 44 KFRPLQLETINVTMA----G----------KEVFLVMPTGGGKSLCY--QLPAL------------C------------- 82 (591)
T ss_dssp SCCTTHHHHHHHHHT----T----------CCEEEECCTTSCTTHHH--HHHHH------------T-------------
T ss_pred CCCHHHHHHHHHHHc----C----------CCEEEEECCCChHHHHH--HHHHH------------H-------------
Confidence 578999999987661 1 23799999999999432 22211 0
Q ss_pred CCCCcccCCchhHHhhhhhhhhhccCCCCCCCCcEEEEecCchhHHHHHHHHHhcC
Q 042849 740 SNSDNVSMGSIDEVLQNMDQNLLRTLPKLCPKPRMLVCAPSNAATDELLTRVLDRG 795 (1019)
Q Consensus 740 ~~s~~~~~g~~~e~~~~~~~n~~r~~~k~~~k~RILVCAPSNaAVDEll~RLl~~G 795 (1019)
...++||++|+-+-+.+.+.+|.+.|
T Consensus 83 ------------------------------~~g~~lVisP~~~L~~q~~~~l~~~g 108 (591)
T 2v1x_A 83 ------------------------------SDGFTLVICPLISLMEDQLMVLKQLG 108 (591)
T ss_dssp ------------------------------SSSEEEEECSCHHHHHHHHHHHHHHT
T ss_pred ------------------------------cCCcEEEEeCHHHHHHHHHHHHHhcC
Confidence 14589999999999999999986543
No 61
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=96.61 E-value=0.01 Score=73.46 Aligned_cols=60 Identities=15% Similarity=0.113 Sum_probs=38.4
Q ss_pred ccCcEEEEecccchhHHHhhhcCCCCEEEEcCCCCCCcccccc--ccc--cCCCeEEEecCCCC
Q 042849 944 NEAEIVFTTVSSSGRKLFSRLTHGFDMVVIDEAAQASEVGVLP--PLS--LGAARCVLGGGSSA 1003 (1019)
Q Consensus 944 ~eA~IV~sTlSssg~~ll~~l~~~FDvVIIDEAAQa~E~stLI--PL~--~g~kr~ILVGDpkQ 1003 (1019)
...+||++|........-......|++||||||-.+.-..+.. .|. ....+++|-|=|-|
T Consensus 344 ~~~dvvitTy~~l~~~~~~l~~~~w~~vIvDEaH~lkn~~s~~~~~l~~l~~~~rl~LTgTPiq 407 (800)
T 3mwy_W 344 MKFNVLLTTYEYILKDRAELGSIKWQFMAVDEAHRLKNAESSLYESLNSFKVANRMLITGTPLQ 407 (800)
T ss_dssp CCCSEEEECTTHHHHTHHHHHTSEEEEEEETTGGGGCCSSSHHHHHHTTSEEEEEEEECSCCCS
T ss_pred ccCCEEEecHHHHHhhHHHHhcCCcceeehhhhhhhcCchhHHHHHHHHhhhccEEEeeCCcCC
Confidence 4678999998876554322223489999999998875433321 111 13457788887754
No 62
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=96.60 E-value=0.0061 Score=76.86 Aligned_cols=72 Identities=17% Similarity=0.136 Sum_probs=49.0
Q ss_pred cCCChHHHHHHHHHHHHhhcCCCCCCCCCCCCeeEEeCCCCCChhHHHHHHHHHHHHHhhhhhhhhhhhhcCcccccCCC
Q 042849 659 RTFNGPQLAAIQWAAIHTAAGTSSGMTKSPWPFTLVQGPPGTGKTHTVWGMLNVIHLVQYQHYYNSLLKKLAPESYKQPN 738 (1019)
Q Consensus 659 ~~LNeSQ~eAI~~Al~~~~~g~s~~~~k~~~~fsLIQGPPGTGKTkTI~~LL~~Lll~~~q~~~~sLlk~l~~~~~kq~~ 738 (1019)
..+.+.|.+||..++. | .-.||++|.|+|||.+....+.. .+. +.
T Consensus 247 ~~~r~~Q~~ai~~il~----g----------~~~ll~a~TGsGKTl~~~~~i~~------------~l~-------~~-- 291 (936)
T 4a2w_A 247 KKARSYQIELAQPAIN----G----------KNALICAPTGSGKTFVSILICEH------------HFQ-------NM-- 291 (936)
T ss_dssp -CCCHHHHHHHHHHHT----T----------CCEEEECCTTSCHHHHHHHHHHT------------TTT-------TC--
T ss_pred CCCCHHHHHHHHHHHc----C----------CCEEEEeCCCchHHHHHHHHHHH------------HHH-------hc--
Confidence 4688999999997761 1 23799999999999654333310 000 00
Q ss_pred CCCCCcccCCchhHHhhhhhhhhhccCCCCCCCCcEEEEecCchhHHHHHHHHHh
Q 042849 739 ESNSDNVSMGSIDEVLQNMDQNLLRTLPKLCPKPRMLVCAPSNAATDELLTRVLD 793 (1019)
Q Consensus 739 ~~~s~~~~~g~~~e~~~~~~~n~~r~~~k~~~k~RILVCAPSNaAVDEll~RLl~ 793 (1019)
....+.++||.+|+.+-+.++..++.+
T Consensus 292 ----------------------------~~~~~~~vLvl~Pt~~L~~Q~~~~~~~ 318 (936)
T 4a2w_A 292 ----------------------------PAGRKAKVVFLATKVPVYEQQKNVFKH 318 (936)
T ss_dssp ----------------------------CSSCCCCEEEECSSHHHHHHHHHHHHH
T ss_pred ----------------------------cccCCCeEEEEeCCHHHHHHHHHHHHH
Confidence 001267899999999999999888754
No 63
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=96.52 E-value=0.0082 Score=76.64 Aligned_cols=23 Identities=13% Similarity=0.093 Sum_probs=20.6
Q ss_pred CCcEEEEecCchhHHHHHHHHHh
Q 042849 771 KPRMLVCAPSNAATDELLTRVLD 793 (1019)
Q Consensus 771 k~RILVCAPSNaAVDEll~RLl~ 793 (1019)
++++||++||..-+.++..++.+
T Consensus 99 ~~~~lil~PtreLa~Q~~~~l~~ 121 (1054)
T 1gku_B 99 GKRCYVIFPTSLLVIQAAETIRK 121 (1054)
T ss_dssp SCCEEEEESCHHHHHHHHHHHHH
T ss_pred CCeEEEEeccHHHHHHHHHHHHH
Confidence 57999999999999999998854
No 64
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=96.46 E-value=0.0087 Score=62.45 Aligned_cols=71 Identities=20% Similarity=0.215 Sum_probs=49.0
Q ss_pred cCCChHHHHHHHHHHHHhhcCCCCCCCCCCCCeeEEeCCCCCChhHHHHHHHHHHHHHhhhhhhhhhhhhcCcccccCCC
Q 042849 659 RTFNGPQLAAIQWAAIHTAAGTSSGMTKSPWPFTLVQGPPGTGKTHTVWGMLNVIHLVQYQHYYNSLLKKLAPESYKQPN 738 (1019)
Q Consensus 659 ~~LNeSQ~eAI~~Al~~~~~g~s~~~~k~~~~fsLIQGPPGTGKTkTI~~LL~~Lll~~~q~~~~sLlk~l~~~~~kq~~ 738 (1019)
..+++.|.+||..++. | .-.+|++|.|+|||.+....+ +.. +.+
T Consensus 50 ~~~~~~Q~~~i~~~~~----~----------~~~l~~a~TGsGKT~~~~l~~--l~~---------l~~----------- 93 (245)
T 3dkp_A 50 QMPTPIQMQAIPVMLH----G----------RELLASAPTGSGKTLAFSIPI--LMQ---------LKQ----------- 93 (245)
T ss_dssp CSCCHHHHHHHHHHHT----T----------CCEEEECCTTSCHHHHHHHHH--HHH---------HCS-----------
T ss_pred CCCCHHHHHHHHHHhC----C----------CCEEEECCCCCcHHHHHHHHH--HHH---------Hhh-----------
Confidence 3589999999986651 1 226999999999997532221 100 000
Q ss_pred CCCCCcccCCchhHHhhhhhhhhhccCCCCCCCCcEEEEecCchhHHHHHHHHHh
Q 042849 739 ESNSDNVSMGSIDEVLQNMDQNLLRTLPKLCPKPRMLVCAPSNAATDELLTRVLD 793 (1019)
Q Consensus 739 ~~~s~~~~~g~~~e~~~~~~~n~~r~~~k~~~k~RILVCAPSNaAVDEll~RLl~ 793 (1019)
....+.++||.+||.+-+.++..++.+
T Consensus 94 ----------------------------~~~~~~~~lil~Pt~~L~~q~~~~~~~ 120 (245)
T 3dkp_A 94 ----------------------------PANKGFRALIISPTRELASQIHRELIK 120 (245)
T ss_dssp ----------------------------CCSSSCCEEEECSSHHHHHHHHHHHHH
T ss_pred ----------------------------cccCCceEEEEeCCHHHHHHHHHHHHH
Confidence 011367899999999999999999864
No 65
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=96.44 E-value=0.003 Score=63.06 Aligned_cols=46 Identities=24% Similarity=0.190 Sum_probs=31.4
Q ss_pred ChHHHHHHHHHHHHhhcCCCCCCCCCCCCeeEEeCCCCCChhHHHHHHHHH
Q 042849 662 NGPQLAAIQWAAIHTAAGTSSGMTKSPWPFTLVQGPPGTGKTHTVWGMLNV 712 (1019)
Q Consensus 662 NeSQ~eAI~~Al~~~~~g~s~~~~k~~~~fsLIQGPPGTGKTkTI~~LL~~ 712 (1019)
++.|.+|+..+..- +.... .......+|.||||||||+++..|...
T Consensus 16 ~~~~~~~~~~~~~~-~~~~~----~~~g~~~~l~G~~G~GKTtL~~~i~~~ 61 (180)
T 3ec2_A 16 NVSQNRALLTIRVF-VHNFN----PEEGKGLTFVGSPGVGKTHLAVATLKA 61 (180)
T ss_dssp SHHHHHHHHHHHHH-HHSCC----GGGCCEEEECCSSSSSHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH-HHhcc----ccCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 56888888866421 11111 112467899999999999998888764
No 66
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=96.35 E-value=0.0025 Score=70.95 Aligned_cols=45 Identities=9% Similarity=0.071 Sum_probs=32.6
Q ss_pred ChHHHHHHHHHHHHhhcCCCCCCCCCCCCeeEEeCCCCCChhHHHHHHHHHH
Q 042849 662 NGPQLAAIQWAAIHTAAGTSSGMTKSPWPFTLVQGPPGTGKTHTVWGMLNVI 713 (1019)
Q Consensus 662 NeSQ~eAI~~Al~~~~~g~s~~~~k~~~~fsLIQGPPGTGKTkTI~~LL~~L 713 (1019)
-+.|.+.|..++.....+ ...+..||.||||||||.++..++..+
T Consensus 25 Re~E~~~i~~~L~~~i~~-------~~~~~lli~GpPGTGKT~~v~~v~~~L 69 (318)
T 3te6_A 25 QVEDFTRIFLPIYDSLMS-------SQNKLFYITNADDSTKFQLVNDVMDEL 69 (318)
T ss_dssp HHHHHHHHHHHHHHHHHT-------TCCCEEEEECCCSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcC-------CCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 357777777666543322 134567999999999999999988754
No 67
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=96.31 E-value=0.012 Score=64.77 Aligned_cols=72 Identities=21% Similarity=0.140 Sum_probs=51.1
Q ss_pred cCCChHHHHHHHHHHHHhhcCCCCCCCCCCCCeeEEeCCCCCChhHHHHHHHHHHHHHhhhhhhhhhhhhcCcccccCCC
Q 042849 659 RTFNGPQLAAIQWAAIHTAAGTSSGMTKSPWPFTLVQGPPGTGKTHTVWGMLNVIHLVQYQHYYNSLLKKLAPESYKQPN 738 (1019)
Q Consensus 659 ~~LNeSQ~eAI~~Al~~~~~g~s~~~~k~~~~fsLIQGPPGTGKTkTI~~LL~~Lll~~~q~~~~sLlk~l~~~~~kq~~ 738 (1019)
..+++.|.+||..++. + ...-.||++|.|+|||.+....+... +.
T Consensus 26 ~~~~~~Q~~~i~~~~~----~--------~~~~~lv~a~TGsGKT~~~~~~~~~~-----------~~------------ 70 (395)
T 3pey_A 26 QKPSKIQERALPLLLH----N--------PPRNMIAQSQSGTGKTAAFSLTMLTR-----------VN------------ 70 (395)
T ss_dssp CSCCHHHHHHHHHHHC----S--------SCCCEEEECCTTSCHHHHHHHHHHHH-----------CC------------
T ss_pred CCCCHHHHHHHHHHHc----C--------CCCeEEEECCCCCcHHHHHHHHHHHH-----------hc------------
Confidence 4689999999987651 1 11347999999999997554332100 00
Q ss_pred CCCCCcccCCchhHHhhhhhhhhhccCCCCCCCCcEEEEecCchhHHHHHHHHHh
Q 042849 739 ESNSDNVSMGSIDEVLQNMDQNLLRTLPKLCPKPRMLVCAPSNAATDELLTRVLD 793 (1019)
Q Consensus 739 ~~~s~~~~~g~~~e~~~~~~~n~~r~~~k~~~k~RILVCAPSNaAVDEll~RLl~ 793 (1019)
....+.++||++|+.+.++++..++.+
T Consensus 71 ----------------------------~~~~~~~~lil~P~~~L~~q~~~~~~~ 97 (395)
T 3pey_A 71 ----------------------------PEDASPQAICLAPSRELARQTLEVVQE 97 (395)
T ss_dssp ----------------------------TTCCSCCEEEECSSHHHHHHHHHHHHH
T ss_pred ----------------------------cCCCCccEEEECCCHHHHHHHHHHHHH
Confidence 012367999999999999999999865
No 68
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=96.31 E-value=0.041 Score=66.45 Aligned_cols=51 Identities=14% Similarity=0.090 Sum_probs=34.5
Q ss_pred hccCCChHHHHHHHHHHHHhhcCCCCCCCCCCCCeeEEeCCCCCChhHHHHHHHHH
Q 042849 657 LHRTFNGPQLAAIQWAAIHTAAGTSSGMTKSPWPFTLVQGPPGTGKTHTVWGMLNV 712 (1019)
Q Consensus 657 L~~~LNeSQ~eAI~~Al~~~~~g~s~~~~k~~~~fsLIQGPPGTGKTkTI~~LL~~ 712 (1019)
+...|-+.|.+||.+.+... .|.. .....=.|+.-+.|+|||-++++++..
T Consensus 52 l~~~LrpyQ~~gv~~l~~~~-~~~~----~~~~~g~ILad~mGlGKT~~~i~~i~~ 102 (644)
T 1z3i_X 52 LSKVLRPHQREGVKFLWDCV-TGRR----IENSYGCIMADEMGLGKTLQCITLIWT 102 (644)
T ss_dssp HHTTCCHHHHHHHHHHHHHH-TTSS----STTCCEEEECCCTTSCHHHHHHHHHHH
T ss_pred hhhcccHHHHHHHHHHHHhh-hccc----ccCCCCeEeeeCCCchHHHHHHHHHHH
Confidence 45678999999999865322 1110 001123689999999999988887763
No 69
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=96.28 E-value=0.0085 Score=61.56 Aligned_cols=70 Identities=21% Similarity=0.199 Sum_probs=48.7
Q ss_pred cCCChHHHHHHHHHHHHhhcCCCCCCCCCCCCeeEEeCCCCCChhHHHHHHHHHHHHHhhhhhhhhhhhhcCcccccCCC
Q 042849 659 RTFNGPQLAAIQWAAIHTAAGTSSGMTKSPWPFTLVQGPPGTGKTHTVWGMLNVIHLVQYQHYYNSLLKKLAPESYKQPN 738 (1019)
Q Consensus 659 ~~LNeSQ~eAI~~Al~~~~~g~s~~~~k~~~~fsLIQGPPGTGKTkTI~~LL~~Lll~~~q~~~~sLlk~l~~~~~kq~~ 738 (1019)
..+++-|.+||..++. | .-.+|++|.|+|||.+....+ +.. +.
T Consensus 25 ~~~~~~Q~~~i~~~~~----~----------~~~lv~a~TGsGKT~~~~~~~--l~~----------l~----------- 67 (219)
T 1q0u_A 25 YKPTEIQERIIPGALR----G----------ESMVGQSQTGTGKTHAYLLPI--MEK----------IK----------- 67 (219)
T ss_dssp CSCCHHHHHHHHHHHH----T----------CCEEEECCSSHHHHHHHHHHH--HHH----------CC-----------
T ss_pred CCCCHHHHHHHHHHhC----C----------CCEEEECCCCChHHHHHHHHH--HHH----------HH-----------
Confidence 3589999999987652 1 226999999999996532222 100 00
Q ss_pred CCCCCcccCCchhHHhhhhhhhhhccCCCCCCCCcEEEEecCchhHHHHHHHHHh
Q 042849 739 ESNSDNVSMGSIDEVLQNMDQNLLRTLPKLCPKPRMLVCAPSNAATDELLTRVLD 793 (1019)
Q Consensus 739 ~~~s~~~~~g~~~e~~~~~~~n~~r~~~k~~~k~RILVCAPSNaAVDEll~RLl~ 793 (1019)
....+.++||++||.+.+.++..++.+
T Consensus 68 ----------------------------~~~~~~~~lil~Pt~~L~~q~~~~~~~ 94 (219)
T 1q0u_A 68 ----------------------------PERAEVQAVITAPTRELATQIYHETLK 94 (219)
T ss_dssp ----------------------------TTSCSCCEEEECSSHHHHHHHHHHHHH
T ss_pred ----------------------------hCcCCceEEEEcCcHHHHHHHHHHHHH
Confidence 011357999999999999999988754
No 70
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=96.04 E-value=0.015 Score=67.35 Aligned_cols=69 Identities=14% Similarity=0.132 Sum_probs=52.1
Q ss_pred cCCChHHHHHHHHHHHHhhcCCCCCCCCCCCCeeEEeCCCCCChhHHHHHHHHHHHHHhhhhhhhhhhhhcCcccccCCC
Q 042849 659 RTFNGPQLAAIQWAAIHTAAGTSSGMTKSPWPFTLVQGPPGTGKTHTVWGMLNVIHLVQYQHYYNSLLKKLAPESYKQPN 738 (1019)
Q Consensus 659 ~~LNeSQ~eAI~~Al~~~~~g~s~~~~k~~~~fsLIQGPPGTGKTkTI~~LL~~Lll~~~q~~~~sLlk~l~~~~~kq~~ 738 (1019)
..|++.|.+||..++.+ .-.||+||.|+|||.+...++..+ +.
T Consensus 112 ~~l~~~Q~~ai~~~~~~--------------~~~ll~~~tGsGKT~~~~~~~~~~------------~~----------- 154 (510)
T 2oca_A 112 IEPHWYQKDAVFEGLVN--------------RRRILNLPTSAGRSLIQALLARYY------------LE----------- 154 (510)
T ss_dssp ECCCHHHHHHHHHHHHH--------------SEEEEECCSTTTHHHHHHHHHHHH------------HH-----------
T ss_pred CCCCHHHHHHHHHHHhc--------------CCcEEEeCCCCCHHHHHHHHHHHH------------Hh-----------
Confidence 47999999999987632 236999999999998775544311 00
Q ss_pred CCCCCcccCCchhHHhhhhhhhhhccCCCCCCCCcEEEEecCchhHHHHHHHHHhc
Q 042849 739 ESNSDNVSMGSIDEVLQNMDQNLLRTLPKLCPKPRMLVCAPSNAATDELLTRVLDR 794 (1019)
Q Consensus 739 ~~~s~~~~~g~~~e~~~~~~~n~~r~~~k~~~k~RILVCAPSNaAVDEll~RLl~~ 794 (1019)
..+.++||++|+.+-+++...++.+.
T Consensus 155 ------------------------------~~~~~vlvl~P~~~L~~Q~~~~~~~~ 180 (510)
T 2oca_A 155 ------------------------------NYEGKILIIVPTTALTTQMADDFVDY 180 (510)
T ss_dssp ------------------------------HCSSEEEEEESSHHHHHHHHHHHHHT
T ss_pred ------------------------------CCCCeEEEEECcHHHHHHHHHHHHHh
Confidence 01459999999999999999998653
No 71
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.04 E-value=0.006 Score=59.16 Aligned_cols=18 Identities=28% Similarity=0.512 Sum_probs=15.4
Q ss_pred eEEeCCCCCChhHHHHHH
Q 042849 692 TLVQGPPGTGKTHTVWGM 709 (1019)
Q Consensus 692 sLIQGPPGTGKTkTI~~L 709 (1019)
.||+||||||||+++..|
T Consensus 27 vll~G~~GtGKt~lA~~i 44 (145)
T 3n70_A 27 VWLYGAPGTGRMTGARYL 44 (145)
T ss_dssp EEEESSTTSSHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHH
Confidence 699999999999876554
No 72
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=95.96 E-value=0.007 Score=59.09 Aligned_cols=23 Identities=35% Similarity=0.508 Sum_probs=19.6
Q ss_pred CeeEEeCCCCCChhHHHHHHHHH
Q 042849 690 PFTLVQGPPGTGKTHTVWGMLNV 712 (1019)
Q Consensus 690 ~fsLIQGPPGTGKTkTI~~LL~~ 712 (1019)
...||.||||||||+++..+...
T Consensus 44 ~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 44 NNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHHH
Confidence 45799999999999998887764
No 73
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=95.90 E-value=0.0089 Score=61.15 Aligned_cols=24 Identities=21% Similarity=0.318 Sum_probs=20.4
Q ss_pred CeeEEeCCCCCChhHHHHHHHHHH
Q 042849 690 PFTLVQGPPGTGKTHTVWGMLNVI 713 (1019)
Q Consensus 690 ~fsLIQGPPGTGKTkTI~~LL~~L 713 (1019)
...||.||||||||+++..+...+
T Consensus 53 ~~~ll~G~~G~GKT~la~~l~~~~ 76 (242)
T 3bos_A 53 QAIYLWGPVKSGRTHLIHAACARA 76 (242)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 568999999999999988887643
No 74
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=95.81 E-value=0.021 Score=63.39 Aligned_cols=72 Identities=17% Similarity=0.061 Sum_probs=49.3
Q ss_pred cCCChHHHHHHHHHHHHhhcCCCCCCCCCCCCeeEEeCCCCCChhHHHHHHHHHHHHHhhhhhhhhhhhhcCcccccCCC
Q 042849 659 RTFNGPQLAAIQWAAIHTAAGTSSGMTKSPWPFTLVQGPPGTGKTHTVWGMLNVIHLVQYQHYYNSLLKKLAPESYKQPN 738 (1019)
Q Consensus 659 ~~LNeSQ~eAI~~Al~~~~~g~s~~~~k~~~~fsLIQGPPGTGKTkTI~~LL~~Lll~~~q~~~~sLlk~l~~~~~kq~~ 738 (1019)
..+++-|.+||..++. + ...-.||++|.|+|||.+....+. .. +.
T Consensus 46 ~~~~~~Q~~~i~~~~~----~--------~~~~~lv~apTGsGKT~~~~~~~~--~~---------~~------------ 90 (412)
T 3fht_A 46 NRPSKIQENALPLMLA----E--------PPQNLIAQSQSGTGKTAAFVLAML--SQ---------VE------------ 90 (412)
T ss_dssp CSCCHHHHHHHHHHHS----S--------SCCCEEEECCTTSCHHHHHHHHHH--HH---------CC------------
T ss_pred CCCCHHHHHHHHHHhc----C--------CCCeEEEECCCCchHHHHHHHHHH--HH---------hh------------
Confidence 4689999999987651 1 113479999999999965432221 00 00
Q ss_pred CCCCCcccCCchhHHhhhhhhhhhccCCCCCCCCcEEEEecCchhHHHHHHHHHh
Q 042849 739 ESNSDNVSMGSIDEVLQNMDQNLLRTLPKLCPKPRMLVCAPSNAATDELLTRVLD 793 (1019)
Q Consensus 739 ~~~s~~~~~g~~~e~~~~~~~n~~r~~~k~~~k~RILVCAPSNaAVDEll~RLl~ 793 (1019)
....++++||.+|+.+.+.++..++.+
T Consensus 91 ----------------------------~~~~~~~~lil~P~~~L~~q~~~~~~~ 117 (412)
T 3fht_A 91 ----------------------------PANKYPQCLCLSPTYELALQTGKVIEQ 117 (412)
T ss_dssp ----------------------------TTSCSCCEEEECSSHHHHHHHHHHHHH
T ss_pred ----------------------------hcCCCCCEEEECCCHHHHHHHHHHHHH
Confidence 012356999999999999999777654
No 75
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=95.65 E-value=0.0039 Score=65.47 Aligned_cols=22 Identities=23% Similarity=0.357 Sum_probs=19.5
Q ss_pred eeEEeCCCCCChhHHHHHHHHH
Q 042849 691 FTLVQGPPGTGKTHTVWGMLNV 712 (1019)
Q Consensus 691 fsLIQGPPGTGKTkTI~~LL~~ 712 (1019)
--||.||||||||+++.+|+..
T Consensus 60 ~ili~GPPGtGKTt~a~ala~~ 81 (212)
T 1tue_A 60 CLVFCGPANTGKSYFGMSFIHF 81 (212)
T ss_dssp EEEEESCGGGCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4799999999999999888764
No 76
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=95.64 E-value=0.0057 Score=59.31 Aligned_cols=18 Identities=11% Similarity=0.171 Sum_probs=14.7
Q ss_pred eEEeCCCCCChhHHHHHH
Q 042849 692 TLVQGPPGTGKTHTVWGM 709 (1019)
Q Consensus 692 sLIQGPPGTGKTkTI~~L 709 (1019)
.||+||||||||+++..|
T Consensus 30 vll~G~~GtGKt~lA~~i 47 (143)
T 3co5_A 30 VFLTGEAGSPFETVARYF 47 (143)
T ss_dssp EEEEEETTCCHHHHHGGG
T ss_pred EEEECCCCccHHHHHHHH
Confidence 699999999999765443
No 77
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=95.62 E-value=0.016 Score=70.42 Aligned_cols=22 Identities=32% Similarity=0.179 Sum_probs=18.4
Q ss_pred CCcEEEEecCchhHHHHHHHHH
Q 042849 771 KPRMLVCAPSNAATDELLTRVL 792 (1019)
Q Consensus 771 k~RILVCAPSNaAVDEll~RLl 792 (1019)
+.++||++||-..+.++..++.
T Consensus 257 g~~vLVl~PTReLA~Qia~~l~ 278 (666)
T 3o8b_A 257 GYKVLVLNPSVAATLGFGAYMS 278 (666)
T ss_dssp TCCEEEEESCHHHHHHHHHHHH
T ss_pred CCeEEEEcchHHHHHHHHHHHH
Confidence 4589999999888888888764
No 78
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=95.58 E-value=0.0092 Score=58.36 Aligned_cols=23 Identities=35% Similarity=0.478 Sum_probs=19.2
Q ss_pred CeeEEeCCCCCChhHHHHHHHHH
Q 042849 690 PFTLVQGPPGTGKTHTVWGMLNV 712 (1019)
Q Consensus 690 ~fsLIQGPPGTGKTkTI~~LL~~ 712 (1019)
...||.||||||||+++..+...
T Consensus 44 ~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 44 NNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp CEEEEESCGGGCHHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHHH
Confidence 45699999999999988877653
No 79
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=95.37 E-value=0.019 Score=57.39 Aligned_cols=40 Identities=28% Similarity=0.387 Sum_probs=27.3
Q ss_pred ChHHHHHHHHHHHHhhcCCCCCCCCCCCCeeEEeCCCCCChhHHHHHHHHH
Q 042849 662 NGPQLAAIQWAAIHTAAGTSSGMTKSPWPFTLVQGPPGTGKTHTVWGMLNV 712 (1019)
Q Consensus 662 NeSQ~eAI~~Al~~~~~g~s~~~~k~~~~fsLIQGPPGTGKTkTI~~LL~~ 712 (1019)
.+...+++...+.. + ..+..||.||||||||+++..+...
T Consensus 22 ~~~~~~~l~~~l~~---~--------~~~~~ll~G~~G~GKT~l~~~l~~~ 61 (226)
T 2chg_A 22 QDEVIQRLKGYVER---K--------NIPHLLFSGPPGTGKTATAIALARD 61 (226)
T ss_dssp CHHHHHHHHHHHHT---T--------CCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhC---C--------CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 44556666665531 1 1133799999999999988877664
No 80
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=95.36 E-value=0.0085 Score=65.25 Aligned_cols=23 Identities=17% Similarity=0.134 Sum_probs=19.4
Q ss_pred CeeEEeCCCCCChhHHHHHHHHH
Q 042849 690 PFTLVQGPPGTGKTHTVWGMLNV 712 (1019)
Q Consensus 690 ~fsLIQGPPGTGKTkTI~~LL~~ 712 (1019)
...||+||||||||+++.+|...
T Consensus 37 ~~lLl~GppGtGKT~la~aiA~~ 59 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQCELVFRK 59 (293)
T ss_dssp SEEEEEECTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 45789999999999988887664
No 81
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=95.32 E-value=0.025 Score=60.49 Aligned_cols=22 Identities=32% Similarity=0.527 Sum_probs=18.5
Q ss_pred eeEEeCCCCCChhHHHHHHHHH
Q 042849 691 FTLVQGPPGTGKTHTVWGMLNV 712 (1019)
Q Consensus 691 fsLIQGPPGTGKTkTI~~LL~~ 712 (1019)
-.||.||||||||+++..+...
T Consensus 52 ~vll~G~~GtGKT~la~~la~~ 73 (310)
T 1ofh_A 52 NILMIGPTGVGKTEIARRLAKL 73 (310)
T ss_dssp CEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4699999999999988877653
No 82
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=95.32 E-value=0.021 Score=57.51 Aligned_cols=41 Identities=22% Similarity=0.149 Sum_probs=28.3
Q ss_pred ChHHHHHHHHHHHHhhcCCCCCCCCCCCCeeEEeCCCCCChhHHHHHHHHH
Q 042849 662 NGPQLAAIQWAAIHTAAGTSSGMTKSPWPFTLVQGPPGTGKTHTVWGMLNV 712 (1019)
Q Consensus 662 NeSQ~eAI~~Al~~~~~g~s~~~~k~~~~fsLIQGPPGTGKTkTI~~LL~~ 712 (1019)
.+...+.+..++.. + ......||.||||||||+++..+...
T Consensus 28 ~~~~~~~l~~~l~~---~-------~~~~~~ll~G~~G~GKT~l~~~~~~~ 68 (250)
T 1njg_A 28 QEHVLTALANGLSL---G-------RIHHAYLFSGTRGVGKTSIARLLAKG 68 (250)
T ss_dssp CHHHHHHHHHHHHH---T-------CCCSEEEEECSTTSCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHc---C-------CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 45566666666532 1 12247899999999999988877653
No 83
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=95.12 E-value=0.031 Score=60.06 Aligned_cols=23 Identities=30% Similarity=0.364 Sum_probs=19.4
Q ss_pred CeeEEeCCCCCChhHHHHHHHHH
Q 042849 690 PFTLVQGPPGTGKTHTVWGMLNV 712 (1019)
Q Consensus 690 ~fsLIQGPPGTGKTkTI~~LL~~ 712 (1019)
...||+||||||||+++..|...
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~ 70 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAAT 70 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHHH
Confidence 46799999999999988777664
No 84
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=95.11 E-value=0.012 Score=59.58 Aligned_cols=22 Identities=27% Similarity=0.279 Sum_probs=18.8
Q ss_pred CeeEEeCCCCCChhHHHHHHHH
Q 042849 690 PFTLVQGPPGTGKTHTVWGMLN 711 (1019)
Q Consensus 690 ~fsLIQGPPGTGKTkTI~~LL~ 711 (1019)
...+|+||||||||+++.++..
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~ 76 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIAN 76 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4579999999999998877765
No 85
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=95.02 E-value=0.014 Score=61.10 Aligned_cols=22 Identities=36% Similarity=0.516 Sum_probs=18.5
Q ss_pred CeeEEeCCCCCChhHHHHHHHH
Q 042849 690 PFTLVQGPPGTGKTHTVWGMLN 711 (1019)
Q Consensus 690 ~fsLIQGPPGTGKTkTI~~LL~ 711 (1019)
.-.||+||||||||+++.++..
T Consensus 40 ~~vll~G~~GtGKT~la~~la~ 61 (262)
T 2qz4_A 40 KGALLLGPPGCGKTLLAKAVAT 61 (262)
T ss_dssp CEEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 3469999999999998877765
No 86
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=94.94 E-value=0.026 Score=62.44 Aligned_cols=45 Identities=24% Similarity=0.082 Sum_probs=30.5
Q ss_pred ChHHHHHHHHHHHHhhcCCCCCCCCCCCCeeEEeCCCCCChhHHHHHHHHHH
Q 042849 662 NGPQLAAIQWAAIHTAAGTSSGMTKSPWPFTLVQGPPGTGKTHTVWGMLNVI 713 (1019)
Q Consensus 662 NeSQ~eAI~~Al~~~~~g~s~~~~k~~~~fsLIQGPPGTGKTkTI~~LL~~L 713 (1019)
.+.+.+.+..++.....+. .....||.||||||||+++..+...+
T Consensus 25 r~~~~~~l~~~l~~~~~~~-------~~~~vll~G~~G~GKT~la~~l~~~~ 69 (384)
T 2qby_B 25 REDILRDAAIAIRYFVKNE-------VKFSNLFLGLTGTGKTFVSKYIFNEI 69 (384)
T ss_dssp CHHHHHHHHHHHHHHHTTC-------CCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCC-------CCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 4566666666554322221 23578999999999999988887644
No 87
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=94.87 E-value=0.05 Score=69.13 Aligned_cols=68 Identities=12% Similarity=0.074 Sum_probs=50.2
Q ss_pred ccCCChHHHHHHHHHHHHhhcCCCCCCCCCCCCeeEEeCCCCCChhHHHHHHHHHHHHHhhhhhhhhhhhhcCcccccCC
Q 042849 658 HRTFNGPQLAAIQWAAIHTAAGTSSGMTKSPWPFTLVQGPPGTGKTHTVWGMLNVIHLVQYQHYYNSLLKKLAPESYKQP 737 (1019)
Q Consensus 658 ~~~LNeSQ~eAI~~Al~~~~~g~s~~~~k~~~~fsLIQGPPGTGKTkTI~~LL~~Lll~~~q~~~~sLlk~l~~~~~kq~ 737 (1019)
...|++.|.+||...+. ..-.||.||.|+|||.+....+..+ ++
T Consensus 37 ~f~l~~~Q~~aI~~il~--------------g~~vlv~apTGsGKTlv~~~~i~~~------------~~---------- 80 (997)
T 4a4z_A 37 PFELDTFQKEAVYHLEQ--------------GDSVFVAAHTSAGKTVVAEYAIAMA------------HR---------- 80 (997)
T ss_dssp SSCCCHHHHHHHHHHHT--------------TCEEEEECCTTSCSHHHHHHHHHHH------------HH----------
T ss_pred CCCCCHHHHHHHHHHHc--------------CCCEEEEECCCCcHHHHHHHHHHHH------------Hh----------
Confidence 45789999999986541 2348999999999996432222110 00
Q ss_pred CCCCCCcccCCchhHHhhhhhhhhhccCCCCCCCCcEEEEecCchhHHHHHHHHHh
Q 042849 738 NESNSDNVSMGSIDEVLQNMDQNLLRTLPKLCPKPRMLVCAPSNAATDELLTRVLD 793 (1019)
Q Consensus 738 ~~~~s~~~~~g~~~e~~~~~~~n~~r~~~k~~~k~RILVCAPSNaAVDEll~RLl~ 793 (1019)
.+.++||++|+.+.+.++..++.+
T Consensus 81 --------------------------------~g~~vlvl~PtraLa~Q~~~~l~~ 104 (997)
T 4a4z_A 81 --------------------------------NMTKTIYTSPIKALSNQKFRDFKE 104 (997)
T ss_dssp --------------------------------TTCEEEEEESCGGGHHHHHHHHHT
T ss_pred --------------------------------cCCeEEEEeCCHHHHHHHHHHHHH
Confidence 257899999999999999999965
No 88
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=94.86 E-value=0.03 Score=61.84 Aligned_cols=23 Identities=43% Similarity=0.686 Sum_probs=19.8
Q ss_pred CeeEEeCCCCCChhHHHHHHHHH
Q 042849 690 PFTLVQGPPGTGKTHTVWGMLNV 712 (1019)
Q Consensus 690 ~fsLIQGPPGTGKTkTI~~LL~~ 712 (1019)
...||.||||||||+++..+...
T Consensus 71 ~~vLl~GppGtGKT~la~~la~~ 93 (368)
T 3uk6_A 71 RAVLIAGQPGTGKTAIAMGMAQA 93 (368)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999988887764
No 89
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=94.78 E-value=0.055 Score=59.01 Aligned_cols=23 Identities=13% Similarity=0.119 Sum_probs=19.7
Q ss_pred CCcEEEEecCchhHHHHHHHHHh
Q 042849 771 KPRMLVCAPSNAATDELLTRVLD 793 (1019)
Q Consensus 771 k~RILVCAPSNaAVDEll~RLl~ 793 (1019)
.+++||.+||..-+.++...+..
T Consensus 162 ~~~~lil~PtreLa~Q~~~~~~~ 184 (300)
T 3fmo_B 162 YPQCLCLSPTYELALQTGKVIEQ 184 (300)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHH
T ss_pred CceEEEEcCcHHHHHHHHHHHHH
Confidence 56899999999999998877754
No 90
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=94.74 E-value=0.02 Score=62.88 Aligned_cols=45 Identities=22% Similarity=0.205 Sum_probs=29.2
Q ss_pred ChHHHHHHHHHHHHhhcCCCCCCCCCCCCeeEEeCCCCCChhHHHHHHHHHH
Q 042849 662 NGPQLAAIQWAAIHTAAGTSSGMTKSPWPFTLVQGPPGTGKTHTVWGMLNVI 713 (1019)
Q Consensus 662 NeSQ~eAI~~Al~~~~~g~s~~~~k~~~~fsLIQGPPGTGKTkTI~~LL~~L 713 (1019)
.+.+.+.+...+.....+ ......+|+||||||||+++..+...+
T Consensus 24 r~~~~~~l~~~l~~~~~~-------~~~~~vll~G~~G~GKT~l~~~~~~~~ 68 (387)
T 2v1u_A 24 REAELRRLAEVLAPALRG-------EKPSNALLYGLTGTGKTAVARLVLRRL 68 (387)
T ss_dssp CHHHHHHHHHTTGGGTSS-------CCCCCEEECBCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcC-------CCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 445666666554221111 123568999999999999988887644
No 91
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=94.71 E-value=0.018 Score=61.94 Aligned_cols=24 Identities=33% Similarity=0.498 Sum_probs=20.2
Q ss_pred CeeEEeCCCCCChhHHHHHHHHHH
Q 042849 690 PFTLVQGPPGTGKTHTVWGMLNVI 713 (1019)
Q Consensus 690 ~fsLIQGPPGTGKTkTI~~LL~~L 713 (1019)
.-.||.||||||||+++..+...+
T Consensus 68 ~~vll~G~~GtGKT~la~~la~~l 91 (309)
T 3syl_A 68 LHMSFTGNPGTGKTTVALKMAGLL 91 (309)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHH
Confidence 347999999999999988887654
No 92
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=94.66 E-value=0.015 Score=63.53 Aligned_cols=20 Identities=35% Similarity=0.526 Sum_probs=17.7
Q ss_pred eEEeCCCCCChhHHHHHHHH
Q 042849 692 TLVQGPPGTGKTHTVWGMLN 711 (1019)
Q Consensus 692 sLIQGPPGTGKTkTI~~LL~ 711 (1019)
.||.||||||||+++..+..
T Consensus 49 vll~G~pGtGKT~la~~la~ 68 (331)
T 2r44_A 49 ILLEGVPGLAKTLSVNTLAK 68 (331)
T ss_dssp EEEESCCCHHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHH
Confidence 69999999999998877765
No 93
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=94.63 E-value=0.018 Score=61.42 Aligned_cols=22 Identities=41% Similarity=0.542 Sum_probs=18.6
Q ss_pred CeeEEeCCCCCChhHHHHHHHH
Q 042849 690 PFTLVQGPPGTGKTHTVWGMLN 711 (1019)
Q Consensus 690 ~fsLIQGPPGTGKTkTI~~LL~ 711 (1019)
.-.||.||||||||+++.++..
T Consensus 52 ~~~ll~G~~GtGKT~la~~la~ 73 (285)
T 3h4m_A 52 KGILLYGPPGTGKTLLAKAVAT 73 (285)
T ss_dssp SEEEEESSSSSSHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHH
Confidence 4479999999999998877765
No 94
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=94.61 E-value=0.059 Score=63.68 Aligned_cols=23 Identities=13% Similarity=0.252 Sum_probs=20.1
Q ss_pred CCcEEEEecCchhHHHHHHHHHh
Q 042849 771 KPRMLVCAPSNAATDELLTRVLD 793 (1019)
Q Consensus 771 k~RILVCAPSNaAVDEll~RLl~ 793 (1019)
..++||++||.+-+++++..+..
T Consensus 51 ~~~~~~~~~t~~l~~q~~~~~~~ 73 (540)
T 2vl7_A 51 KKKVLIFTRTHSQLDSIYKNAKL 73 (540)
T ss_dssp TCEEEEEESCHHHHHHHHHHHGG
T ss_pred CCcEEEEcCCHHHHHHHHHHHHh
Confidence 56999999999999999988754
No 95
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=94.57 E-value=0.076 Score=60.99 Aligned_cols=35 Identities=26% Similarity=0.186 Sum_probs=26.5
Q ss_pred cCCChHHHHHHHHHHHHhhcCCCCCCCCCCCCeeEEeCCCCCChhHH
Q 042849 659 RTFNGPQLAAIQWAAIHTAAGTSSGMTKSPWPFTLVQGPPGTGKTHT 705 (1019)
Q Consensus 659 ~~LNeSQ~eAI~~Al~~~~~g~s~~~~k~~~~fsLIQGPPGTGKTkT 705 (1019)
..+++-|.+||..++. + ...-.||+||.|+|||.+
T Consensus 113 ~~p~~~Q~~ai~~il~----~--------~~~~~l~~a~TGsGKT~~ 147 (479)
T 3fmp_B 113 NRPSKIQENALPLMLA----E--------PPQNLIAQSQSGTGKTAA 147 (479)
T ss_dssp CSCCHHHHHHHHHHTS----B--------SCCEEEEECCSSSSHHHH
T ss_pred CCCCHHHHHHHHHHHc----C--------CCCcEEEEcCCCCchhHH
Confidence 4578899999986541 1 124579999999999965
No 96
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=94.55 E-value=0.053 Score=55.94 Aligned_cols=24 Identities=38% Similarity=0.418 Sum_probs=20.4
Q ss_pred CCCeeEEeCCCCCChhHHHHHHHH
Q 042849 688 PWPFTLVQGPPGTGKTHTVWGMLN 711 (1019)
Q Consensus 688 ~~~fsLIQGPPGTGKTkTI~~LL~ 711 (1019)
+..+.+|-||||+|||+++..++.
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~ 45 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLW 45 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999998877764
No 97
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=94.55 E-value=0.038 Score=60.99 Aligned_cols=46 Identities=24% Similarity=0.315 Sum_probs=29.1
Q ss_pred ChHHHHHHHHHHHHhhcCCCCCCCCCCCCeeEEeCCCCCChhHHHHHHHHH
Q 042849 662 NGPQLAAIQWAAIHTAAGTSSGMTKSPWPFTLVQGPPGTGKTHTVWGMLNV 712 (1019)
Q Consensus 662 NeSQ~eAI~~Al~~~~~g~s~~~~k~~~~fsLIQGPPGTGKTkTI~~LL~~ 712 (1019)
.+.+.+.+..++.....+... ..+..+|.||||||||+++..+...
T Consensus 22 r~~~~~~l~~~l~~~~~~~~~-----~~~~~li~G~~G~GKTtl~~~l~~~ 67 (389)
T 1fnn_A 22 REQQLQQLDILLGNWLRNPGH-----HYPRATLLGRPGTGKTVTLRKLWEL 67 (389)
T ss_dssp CHHHHHHHHHHHHHHHHSTTS-----SCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCCC-----CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 345566666555432222110 1137899999999999998887764
No 98
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=94.52 E-value=0.018 Score=61.78 Aligned_cols=23 Identities=35% Similarity=0.442 Sum_probs=19.0
Q ss_pred CCeeEEeCCCCCChhHHHHHHHH
Q 042849 689 WPFTLVQGPPGTGKTHTVWGMLN 711 (1019)
Q Consensus 689 ~~fsLIQGPPGTGKTkTI~~LL~ 711 (1019)
..-.||.||||||||+++..+..
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la~ 76 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVAT 76 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHH
Confidence 34579999999999998877755
No 99
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=94.51 E-value=0.019 Score=62.52 Aligned_cols=23 Identities=39% Similarity=0.472 Sum_probs=19.2
Q ss_pred CCeeEEeCCCCCChhHHHHHHHH
Q 042849 689 WPFTLVQGPPGTGKTHTVWGMLN 711 (1019)
Q Consensus 689 ~~fsLIQGPPGTGKTkTI~~LL~ 711 (1019)
....||.||||||||+++.++..
T Consensus 49 ~~~vLL~Gp~GtGKT~la~ala~ 71 (301)
T 3cf0_A 49 SKGVLFYGPPGCGKTLLAKAIAN 71 (301)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHH
T ss_pred CceEEEECCCCcCHHHHHHHHHH
Confidence 34579999999999998877765
No 100
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.48 E-value=0.015 Score=67.31 Aligned_cols=21 Identities=43% Similarity=0.629 Sum_probs=18.4
Q ss_pred eEEeCCCCCChhHHHHHHHHH
Q 042849 692 TLVQGPPGTGKTHTVWGMLNV 712 (1019)
Q Consensus 692 sLIQGPPGTGKTkTI~~LL~~ 712 (1019)
.|+.||||||||.++.++...
T Consensus 218 vLLyGPPGTGKTllAkAiA~e 238 (434)
T 4b4t_M 218 ALMYGPPGTGKTLLARACAAQ 238 (434)
T ss_dssp EEEESCTTSSHHHHHHHHHHH
T ss_pred eEEECcCCCCHHHHHHHHHHH
Confidence 599999999999998888764
No 101
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.43 E-value=0.037 Score=60.99 Aligned_cols=22 Identities=50% Similarity=0.782 Sum_probs=19.6
Q ss_pred eEEeCCCCCChhHHHHHHHHHH
Q 042849 692 TLVQGPPGTGKTHTVWGMLNVI 713 (1019)
Q Consensus 692 sLIQGPPGTGKTkTI~~LL~~L 713 (1019)
.|+.||||||||+++..+...+
T Consensus 49 ~ll~Gp~G~GKTtla~~la~~l 70 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTIVALAREI 70 (340)
T ss_dssp EEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 7999999999999998887754
No 102
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.43 E-value=0.017 Score=66.72 Aligned_cols=21 Identities=52% Similarity=0.767 Sum_probs=18.6
Q ss_pred eEEeCCCCCChhHHHHHHHHH
Q 042849 692 TLVQGPPGTGKTHTVWGMLNV 712 (1019)
Q Consensus 692 sLIQGPPGTGKTkTI~~LL~~ 712 (1019)
.|+.||||||||.++.++...
T Consensus 209 iLL~GPPGtGKT~lakAiA~~ 229 (428)
T 4b4t_K 209 VLLYGPPGTGKTMLVKAVANS 229 (428)
T ss_dssp EEEESCTTTTHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 599999999999999888764
No 103
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=94.37 E-value=0.018 Score=61.31 Aligned_cols=23 Identities=30% Similarity=0.446 Sum_probs=19.2
Q ss_pred CeeEEeCCCCCChhHHHHHHHHH
Q 042849 690 PFTLVQGPPGTGKTHTVWGMLNV 712 (1019)
Q Consensus 690 ~fsLIQGPPGTGKTkTI~~LL~~ 712 (1019)
.-.||+||||||||+++..+...
T Consensus 65 ~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 65 VSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHH
Confidence 45799999999999988877653
No 104
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=94.29 E-value=0.023 Score=62.10 Aligned_cols=24 Identities=33% Similarity=0.349 Sum_probs=20.1
Q ss_pred CeeEEeCCCCCChhHHHHHHHHHH
Q 042849 690 PFTLVQGPPGTGKTHTVWGMLNVI 713 (1019)
Q Consensus 690 ~fsLIQGPPGTGKTkTI~~LL~~L 713 (1019)
...||+||||||||+++..+...+
T Consensus 38 ~~lll~G~~GtGKT~la~~i~~~~ 61 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHLLQAAGNEA 61 (324)
T ss_dssp SSEEEECSSSSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHH
Confidence 457999999999999988887644
No 105
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=94.23 E-value=0.025 Score=62.15 Aligned_cols=23 Identities=35% Similarity=0.486 Sum_probs=19.1
Q ss_pred CeeEEeCCCCCChhHHHHHHHHH
Q 042849 690 PFTLVQGPPGTGKTHTVWGMLNV 712 (1019)
Q Consensus 690 ~fsLIQGPPGTGKTkTI~~LL~~ 712 (1019)
.-.||.||||||||+++.++...
T Consensus 52 ~~vLl~GppGtGKT~la~aia~~ 74 (322)
T 3eie_A 52 SGILLYGPPGTGKSYLAKAVATE 74 (322)
T ss_dssp CEEEEECSSSSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 44799999999999988877653
No 106
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=94.18 E-value=0.043 Score=58.05 Aligned_cols=22 Identities=27% Similarity=0.268 Sum_probs=17.6
Q ss_pred CeeEEeCCCCCChhHHHHHHHH
Q 042849 690 PFTLVQGPPGTGKTHTVWGMLN 711 (1019)
Q Consensus 690 ~fsLIQGPPGTGKTkTI~~LL~ 711 (1019)
.-.||+||||||||+++..|..
T Consensus 30 ~~vll~G~~GtGKt~la~~i~~ 51 (265)
T 2bjv_A 30 KPVLIIGERGTGKELIASRLHY 51 (265)
T ss_dssp SCEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEECCCCCcHHHHHHHHHH
Confidence 3479999999999987766643
No 107
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.15 E-value=0.02 Score=65.58 Aligned_cols=24 Identities=38% Similarity=0.612 Sum_probs=19.7
Q ss_pred CCCeeEEeCCCCCChhHHHHHHHHH
Q 042849 688 PWPFTLVQGPPGTGKTHTVWGMLNV 712 (1019)
Q Consensus 688 ~~~fsLIQGPPGTGKTkTI~~LL~~ 712 (1019)
+.+ .|+.||||||||.++.++.+.
T Consensus 182 prG-vLL~GPPGTGKTllAkAiA~e 205 (405)
T 4b4t_J 182 PKG-VILYGPPGTGKTLLARAVAHH 205 (405)
T ss_dssp CCC-EEEESCSSSSHHHHHHHHHHH
T ss_pred CCc-eEEeCCCCCCHHHHHHHHHHh
Confidence 345 599999999999998888664
No 108
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=94.15 E-value=0.026 Score=61.99 Aligned_cols=23 Identities=22% Similarity=0.167 Sum_probs=19.5
Q ss_pred CeeEEeCCCCCChhHHHHHHHHH
Q 042849 690 PFTLVQGPPGTGKTHTVWGMLNV 712 (1019)
Q Consensus 690 ~fsLIQGPPGTGKTkTI~~LL~~ 712 (1019)
.-.+|+||||||||+++.+|...
T Consensus 153 ~~lll~G~~GtGKT~La~aia~~ 175 (308)
T 2qgz_A 153 KGLYLYGDMGIGKSYLLAAMAHE 175 (308)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 45799999999999998887763
No 109
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.12 E-value=0.023 Score=65.79 Aligned_cols=21 Identities=43% Similarity=0.656 Sum_probs=18.4
Q ss_pred eEEeCCCCCChhHHHHHHHHH
Q 042849 692 TLVQGPPGTGKTHTVWGMLNV 712 (1019)
Q Consensus 692 sLIQGPPGTGKTkTI~~LL~~ 712 (1019)
.|+.||||||||.++.++...
T Consensus 218 vLL~GPPGtGKTllAkAiA~e 238 (437)
T 4b4t_L 218 VLLYGPPGTGKTLLAKAVAAT 238 (437)
T ss_dssp EEEESCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 599999999999998888764
No 110
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=94.11 E-value=0.054 Score=58.83 Aligned_cols=50 Identities=16% Similarity=0.134 Sum_probs=34.0
Q ss_pred Hhhhc-cCCChHHHHHHHHHHHHhhcCCCCCCCCCCCCeeEEeCCCCCChhHHHHHHHH
Q 042849 654 IDHLH-RTFNGPQLAAIQWAAIHTAAGTSSGMTKSPWPFTLVQGPPGTGKTHTVWGMLN 711 (1019)
Q Consensus 654 ~~~L~-~~LNeSQ~eAI~~Al~~~~~g~s~~~~k~~~~fsLIQGPPGTGKTkTI~~LL~ 711 (1019)
...|. ..+|..+..+....+.+ +.. ....-.||.||||||||.+..+|..
T Consensus 76 ~~~l~~qg~~~~~~~~~l~~~l~---~~~-----~~~n~~~l~GppgtGKt~~a~ala~ 126 (267)
T 1u0j_A 76 YKILELNGYDPQYAASVFLGWAT---KKF-----GKRNTIWLFGPATTGKTNIAEAIAH 126 (267)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHT---TCS-----TTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHh---CCC-----CCCcEEEEECCCCCCHHHHHHHHHh
Confidence 34443 56999987776656532 110 1234579999999999999888765
No 111
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=94.10 E-value=0.026 Score=62.29 Aligned_cols=22 Identities=36% Similarity=0.504 Sum_probs=18.6
Q ss_pred CeeEEeCCCCCChhHHHHHHHH
Q 042849 690 PFTLVQGPPGTGKTHTVWGMLN 711 (1019)
Q Consensus 690 ~fsLIQGPPGTGKTkTI~~LL~ 711 (1019)
.-.||.||||||||+++.++..
T Consensus 46 ~~iLL~GppGtGKT~la~ala~ 67 (322)
T 1xwi_A 46 RGILLFGPPGTGKSYLAKAVAT 67 (322)
T ss_dssp SEEEEESSSSSCHHHHHHHHHH
T ss_pred ceEEEECCCCccHHHHHHHHHH
Confidence 4569999999999998877765
No 112
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=94.10 E-value=0.015 Score=61.41 Aligned_cols=20 Identities=45% Similarity=0.704 Sum_probs=17.7
Q ss_pred eEEeCCCCCChhHHHHHHHH
Q 042849 692 TLVQGPPGTGKTHTVWGMLN 711 (1019)
Q Consensus 692 sLIQGPPGTGKTkTI~~LL~ 711 (1019)
.||.||||||||+++.++..
T Consensus 47 vll~G~~GtGKT~la~~la~ 66 (268)
T 2r62_A 47 VLLVGPPGTGKTLLAKAVAG 66 (268)
T ss_dssp CCCBCSSCSSHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHH
Confidence 58999999999998887765
No 113
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=94.08 E-value=0.025 Score=59.55 Aligned_cols=20 Identities=45% Similarity=0.715 Sum_probs=17.5
Q ss_pred eEEeCCCCCChhHHHHHHHH
Q 042849 692 TLVQGPPGTGKTHTVWGMLN 711 (1019)
Q Consensus 692 sLIQGPPGTGKTkTI~~LL~ 711 (1019)
.||.||||||||+++.+|..
T Consensus 48 vll~G~~GtGKT~la~~la~ 67 (257)
T 1lv7_A 48 VLMVGPPGTGKTLLAKAIAG 67 (257)
T ss_dssp EEEECCTTSCHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHH
Confidence 69999999999988877765
No 114
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=94.05 E-value=0.029 Score=62.02 Aligned_cols=22 Identities=36% Similarity=0.600 Sum_probs=18.9
Q ss_pred CeeEEeCCCCCChhHHHHHHHH
Q 042849 690 PFTLVQGPPGTGKTHTVWGMLN 711 (1019)
Q Consensus 690 ~fsLIQGPPGTGKTkTI~~LL~ 711 (1019)
...+|.||||||||+++..|..
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~ 73 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIAS 73 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHH
Confidence 5689999999999988777765
No 115
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=94.03 E-value=0.059 Score=57.93 Aligned_cols=23 Identities=35% Similarity=0.670 Sum_probs=19.7
Q ss_pred eeEEeCCCCCChhHHHHHHHHHH
Q 042849 691 FTLVQGPPGTGKTHTVWGMLNVI 713 (1019)
Q Consensus 691 fsLIQGPPGTGKTkTI~~LL~~L 713 (1019)
-.||.||||||||+++..+...+
T Consensus 48 ~~ll~G~~G~GKT~la~~l~~~l 70 (327)
T 1iqp_A 48 HLLFAGPPGVGKTTAALALAREL 70 (327)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHHHh
Confidence 37999999999999988887654
No 116
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=93.99 E-value=0.05 Score=59.44 Aligned_cols=44 Identities=16% Similarity=0.092 Sum_probs=27.1
Q ss_pred ChHHHHHHHHHHHHhhcCCCCCCCCCCCCeeEEeCCCCCChhHHHHHHHH
Q 042849 662 NGPQLAAIQWAAIHTAAGTSSGMTKSPWPFTLVQGPPGTGKTHTVWGMLN 711 (1019)
Q Consensus 662 NeSQ~eAI~~Al~~~~~g~s~~~~k~~~~fsLIQGPPGTGKTkTI~~LL~ 711 (1019)
.+..++++..++....... .+..-.||.||||||||+++..+..
T Consensus 34 ~~~~~~~l~~~l~~~~~~~------~~~~~vll~G~~GtGKT~la~~ia~ 77 (338)
T 3pfi_A 34 QESIKKNLNVFIAAAKKRN------ECLDHILFSGPAGLGKTTLANIISY 77 (338)
T ss_dssp CHHHHHHHHHHHHHHHHTT------SCCCCEEEECSTTSSHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhcC------CCCCeEEEECcCCCCHHHHHHHHHH
Confidence 4555666665553211100 1223479999999999998877754
No 117
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=93.84 E-value=0.037 Score=60.70 Aligned_cols=25 Identities=32% Similarity=0.283 Sum_probs=21.1
Q ss_pred CCeeEEeCCCCCChhHHHHHHHHHH
Q 042849 689 WPFTLVQGPPGTGKTHTVWGMLNVI 713 (1019)
Q Consensus 689 ~~fsLIQGPPGTGKTkTI~~LL~~L 713 (1019)
....+|.||||||||+++..+...+
T Consensus 45 ~~~vli~G~~G~GKTtl~~~l~~~~ 69 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVVKFVLSKL 69 (386)
T ss_dssp CCCEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 3578999999999999988887643
No 118
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=93.83 E-value=0.036 Score=54.47 Aligned_cols=24 Identities=29% Similarity=0.422 Sum_probs=20.5
Q ss_pred CCeeEEeCCCCCChhHHHHHHHHH
Q 042849 689 WPFTLVQGPPGTGKTHTVWGMLNV 712 (1019)
Q Consensus 689 ~~fsLIQGPPGTGKTkTI~~LL~~ 712 (1019)
..+.+|.||||+|||+++..+...
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~~~ 59 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWVAQ 59 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 367899999999999998888763
No 119
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=93.81 E-value=0.056 Score=58.43 Aligned_cols=22 Identities=36% Similarity=0.570 Sum_probs=18.5
Q ss_pred CeeEEeCCCCCChhHHHHHHHH
Q 042849 690 PFTLVQGPPGTGKTHTVWGMLN 711 (1019)
Q Consensus 690 ~fsLIQGPPGTGKTkTI~~LL~ 711 (1019)
...||+||||||||+++..+..
T Consensus 39 ~~vll~G~~GtGKT~la~~i~~ 60 (324)
T 1hqc_A 39 EHLLLFGPPGLGKTTLAHVIAH 60 (324)
T ss_dssp CCCEEECCTTCCCHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHH
Confidence 3479999999999998877765
No 120
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=93.80 E-value=0.11 Score=52.65 Aligned_cols=24 Identities=33% Similarity=0.427 Sum_probs=20.6
Q ss_pred CCCeeEEeCCCCCChhHHHHHHHH
Q 042849 688 PWPFTLVQGPPGTGKTHTVWGMLN 711 (1019)
Q Consensus 688 ~~~fsLIQGPPGTGKTkTI~~LL~ 711 (1019)
+..+.+|-||||+|||+++..|+.
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~l~~ 45 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIFSLHFIA 45 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHH
Confidence 346899999999999998888775
No 121
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=93.71 E-value=0.029 Score=61.22 Aligned_cols=22 Identities=45% Similarity=0.809 Sum_probs=19.4
Q ss_pred eEEeCCCCCChhHHHHHHHHHH
Q 042849 692 TLVQGPPGTGKTHTVWGMLNVI 713 (1019)
Q Consensus 692 sLIQGPPGTGKTkTI~~LL~~L 713 (1019)
.||.||||||||+++..+...+
T Consensus 61 ~ll~G~~G~GKT~la~~la~~l 82 (353)
T 1sxj_D 61 MLFYGPPGTGKTSTILALTKEL 82 (353)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7999999999999988887754
No 122
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=93.67 E-value=0.062 Score=65.23 Aligned_cols=39 Identities=15% Similarity=0.112 Sum_probs=28.0
Q ss_pred CCChHHHHHHHHHHHHhhcCCCCCCCCCCCCeeEEeCCCCCChhHHHHHHH
Q 042849 660 TFNGPQLAAIQWAAIHTAAGTSSGMTKSPWPFTLVQGPPGTGKTHTVWGML 710 (1019)
Q Consensus 660 ~LNeSQ~eAI~~Al~~~~~g~s~~~~k~~~~fsLIQGPPGTGKTkTI~~LL 710 (1019)
.++..|.+||...+. ...++.+|.|++|+|||+++-.++
T Consensus 175 ~~T~dQ~~al~~~~~------------~~~~~~vlta~RGRGKSa~lG~~~ 213 (671)
T 2zpa_A 175 APQPEQQQLLKQLMT------------MPPGVAAVTAARGRGKSALAGQLI 213 (671)
T ss_dssp SCCHHHHHHHHHHTT------------CCSEEEEEEECTTSSHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH------------hhhCeEEEecCCCCCHHHHHHHHH
Confidence 578899999986541 123678999999999995443333
No 123
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=93.65 E-value=0.031 Score=58.79 Aligned_cols=20 Identities=45% Similarity=0.825 Sum_probs=17.7
Q ss_pred eEEeCCCCCChhHHHHHHHH
Q 042849 692 TLVQGPPGTGKTHTVWGMLN 711 (1019)
Q Consensus 692 sLIQGPPGTGKTkTI~~LL~ 711 (1019)
.+|.||||||||+++..|..
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~ 71 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAG 71 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 79999999999998877765
No 124
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=93.64 E-value=0.031 Score=57.89 Aligned_cols=21 Identities=38% Similarity=0.738 Sum_probs=18.0
Q ss_pred CeeEEeCCCCCChhHHHHHHH
Q 042849 690 PFTLVQGPPGTGKTHTVWGML 710 (1019)
Q Consensus 690 ~fsLIQGPPGTGKTkTI~~LL 710 (1019)
-|.||.||||||||+..+.++
T Consensus 6 mi~l~tG~pGsGKT~~a~~~~ 26 (199)
T 2r2a_A 6 EICLITGTPGSGKTLKMVSMM 26 (199)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHH
Confidence 479999999999999876654
No 125
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=93.57 E-value=0.083 Score=61.01 Aligned_cols=22 Identities=41% Similarity=0.673 Sum_probs=18.6
Q ss_pred eeEEeCCCCCChhHHHHHHHHH
Q 042849 691 FTLVQGPPGTGKTHTVWGMLNV 712 (1019)
Q Consensus 691 fsLIQGPPGTGKTkTI~~LL~~ 712 (1019)
-.|+.||||||||+++.++...
T Consensus 65 ~iLl~GppGtGKT~la~ala~~ 86 (456)
T 2c9o_A 65 AVLLAGPPGTGKTALALAIAQE 86 (456)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCcCCHHHHHHHHHHH
Confidence 3699999999999988877653
No 126
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.55 E-value=0.029 Score=64.83 Aligned_cols=21 Identities=38% Similarity=0.563 Sum_probs=18.4
Q ss_pred eEEeCCCCCChhHHHHHHHHH
Q 042849 692 TLVQGPPGTGKTHTVWGMLNV 712 (1019)
Q Consensus 692 sLIQGPPGTGKTkTI~~LL~~ 712 (1019)
.|+.||||||||.++.++...
T Consensus 219 vLLyGPPGTGKTlLAkAiA~e 239 (437)
T 4b4t_I 219 VILYGAPGTGKTLLAKAVANQ 239 (437)
T ss_dssp EEEESSTTTTHHHHHHHHHHH
T ss_pred CceECCCCchHHHHHHHHHHH
Confidence 599999999999998888764
No 127
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=93.54 E-value=0.057 Score=62.56 Aligned_cols=22 Identities=36% Similarity=0.502 Sum_probs=18.0
Q ss_pred CeeEEeCCCCCChhHHHHHHHH
Q 042849 690 PFTLVQGPPGTGKTHTVWGMLN 711 (1019)
Q Consensus 690 ~fsLIQGPPGTGKTkTI~~LL~ 711 (1019)
+-.||+||||||||+++..|..
T Consensus 51 ~~vLL~GppGtGKTtlAr~ia~ 72 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLAEVIAR 72 (447)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCcHHHHHHHHHH
Confidence 3479999999999988776654
No 128
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=93.51 E-value=0.032 Score=60.22 Aligned_cols=22 Identities=41% Similarity=0.587 Sum_probs=18.6
Q ss_pred CCeeEEeCCCCCChhHHHHHHHH
Q 042849 689 WPFTLVQGPPGTGKTHTVWGMLN 711 (1019)
Q Consensus 689 ~~fsLIQGPPGTGKTkTI~~LL~ 711 (1019)
.+ .||.||||||||+++..|..
T Consensus 45 ~G-vlL~Gp~GtGKTtLakala~ 66 (274)
T 2x8a_A 45 AG-VLLAGPPGCGKTLLAKAVAN 66 (274)
T ss_dssp SE-EEEESSTTSCHHHHHHHHHH
T ss_pred Ce-EEEECCCCCcHHHHHHHHHH
Confidence 34 79999999999998877765
No 129
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=93.50 E-value=0.14 Score=52.72 Aligned_cols=24 Identities=29% Similarity=0.303 Sum_probs=20.2
Q ss_pred CCCeeEEeCCCCCChhHHHHHHHH
Q 042849 688 PWPFTLVQGPPGTGKTHTVWGMLN 711 (1019)
Q Consensus 688 ~~~fsLIQGPPGTGKTkTI~~LL~ 711 (1019)
+..+++|-||||+|||+....++.
T Consensus 29 ~G~l~~i~G~pG~GKT~l~l~~~~ 52 (251)
T 2zts_A 29 EGTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHH
Confidence 346899999999999998877653
No 130
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=93.49 E-value=0.078 Score=59.00 Aligned_cols=22 Identities=32% Similarity=0.436 Sum_probs=18.0
Q ss_pred CeeEEeCCCCCChhHHHHHHHH
Q 042849 690 PFTLVQGPPGTGKTHTVWGMLN 711 (1019)
Q Consensus 690 ~fsLIQGPPGTGKTkTI~~LL~ 711 (1019)
.-.||.||||||||+++..|..
T Consensus 52 ~~vll~GppGtGKT~la~~ia~ 73 (363)
T 3hws_A 52 SNILLIGPTGSGKTLLAETLAR 73 (363)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3469999999999988777654
No 131
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=93.48 E-value=0.064 Score=58.32 Aligned_cols=42 Identities=19% Similarity=0.159 Sum_probs=28.9
Q ss_pred CChHHHHHHHHHHHHhhcCCCCCCCCCCCCeeEEeCCCCCChhHHHHHHHHH
Q 042849 661 FNGPQLAAIQWAAIHTAAGTSSGMTKSPWPFTLVQGPPGTGKTHTVWGMLNV 712 (1019)
Q Consensus 661 LNeSQ~eAI~~Al~~~~~g~s~~~~k~~~~fsLIQGPPGTGKTkTI~~LL~~ 712 (1019)
.++...+.+..++.. + ....+.|+.||||||||+++..+...
T Consensus 30 g~~~~~~~l~~~l~~---~-------~~~~~~L~~G~~G~GKT~la~~la~~ 71 (324)
T 3u61_B 30 LPAFDKETFKSITSK---G-------KIPHIILHSPSPGTGKTTVAKALCHD 71 (324)
T ss_dssp CCHHHHHHHHHHHHT---T-------CCCSEEEECSSTTSSHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHc---C-------CCCeEEEeeCcCCCCHHHHHHHHHHH
Confidence 355666777766531 1 12356799999999999998887653
No 132
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=93.46 E-value=0.11 Score=66.71 Aligned_cols=68 Identities=24% Similarity=0.190 Sum_probs=48.7
Q ss_pred ccCCChHHHHHHHHHHHHhhcCCCCCCCCCCCCeeEEeCCCCCChhHHHHHHHHHHHHHhhhhhhhhhhhhcCcccccCC
Q 042849 658 HRTFNGPQLAAIQWAAIHTAAGTSSGMTKSPWPFTLVQGPPGTGKTHTVWGMLNVIHLVQYQHYYNSLLKKLAPESYKQP 737 (1019)
Q Consensus 658 ~~~LNeSQ~eAI~~Al~~~~~g~s~~~~k~~~~fsLIQGPPGTGKTkTI~~LL~~Lll~~~q~~~~sLlk~l~~~~~kq~ 737 (1019)
...+++-|.+||..++ ...-.||+||.|+|||.+....+. .. + .
T Consensus 182 ~f~ltp~Q~~AI~~i~--------------~g~dvLV~ApTGSGKTlva~l~i~--~~---------l-~---------- 225 (1108)
T 3l9o_A 182 PFTLDPFQDTAISCID--------------RGESVLVSAHTSAGKTVVAEYAIA--QS---------L-K---------- 225 (1108)
T ss_dssp SSCCCHHHHHHHHHHT--------------TTCCEEEECCSSSHHHHHHHHHHH--HH---------H-H----------
T ss_pred CCCCCHHHHHHHHHHH--------------cCCCEEEECCCCCChHHHHHHHHH--HH---------H-h----------
Confidence 4578999999998643 113479999999999965433221 00 0 0
Q ss_pred CCCCCCcccCCchhHHhhhhhhhhhccCCCCCCCCcEEEEecCchhHHHHHHHHHh
Q 042849 738 NESNSDNVSMGSIDEVLQNMDQNLLRTLPKLCPKPRMLVCAPSNAATDELLTRVLD 793 (1019)
Q Consensus 738 ~~~~s~~~~~g~~~e~~~~~~~n~~r~~~k~~~k~RILVCAPSNaAVDEll~RLl~ 793 (1019)
.+.++||.+|+-+.+.++..++.+
T Consensus 226 --------------------------------~g~rvlvl~PtraLa~Q~~~~l~~ 249 (1108)
T 3l9o_A 226 --------------------------------NKQRVIYTSPIKALSNQKYRELLA 249 (1108)
T ss_dssp --------------------------------TTCEEEEEESSHHHHHHHHHHHHH
T ss_pred --------------------------------cCCeEEEEcCcHHHHHHHHHHHHH
Confidence 156899999999999999988865
No 133
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=93.45 E-value=0.13 Score=65.46 Aligned_cols=34 Identities=29% Similarity=0.211 Sum_probs=26.8
Q ss_pred cCCChHHHHHHHHHHHHhhcCCCCCCCCCCCCeeEEeCCCCCChhHHH
Q 042849 659 RTFNGPQLAAIQWAAIHTAAGTSSGMTKSPWPFTLVQGPPGTGKTHTV 706 (1019)
Q Consensus 659 ~~LNeSQ~eAI~~Al~~~~~g~s~~~~k~~~~fsLIQGPPGTGKTkTI 706 (1019)
..|++.|.+||...+. + .-.||++|.|+|||.+.
T Consensus 85 f~L~~~Q~eai~~l~~----g----------~~vLV~apTGSGKTlva 118 (1010)
T 2xgj_A 85 FTLDPFQDTAISCIDR----G----------ESVLVSAHTSAGKTVVA 118 (1010)
T ss_dssp SCCCHHHHHHHHHHHH----T----------CEEEEECCTTSCHHHHH
T ss_pred CCCCHHHHHHHHHHHc----C----------CCEEEECCCCCChHHHH
Confidence 3689999999986542 1 23799999999999754
No 134
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=93.43 E-value=0.037 Score=65.18 Aligned_cols=20 Identities=25% Similarity=0.464 Sum_probs=17.1
Q ss_pred eEEeCCCCCChhHHHHHHHH
Q 042849 692 TLVQGPPGTGKTHTVWGMLN 711 (1019)
Q Consensus 692 sLIQGPPGTGKTkTI~~LL~ 711 (1019)
.||.||||||||+++.+|-.
T Consensus 44 VLL~GpPGtGKT~LAraLa~ 63 (500)
T 3nbx_X 44 VFLLGPPGIAKSLIARRLKF 63 (500)
T ss_dssp EEEECCSSSSHHHHHHHGGG
T ss_pred eEeecCchHHHHHHHHHHHH
Confidence 69999999999988777654
No 135
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=93.40 E-value=0.092 Score=57.70 Aligned_cols=24 Identities=25% Similarity=0.264 Sum_probs=19.9
Q ss_pred CeeEEeCCCCCChhHHHHHHHHHH
Q 042849 690 PFTLVQGPPGTGKTHTVWGMLNVI 713 (1019)
Q Consensus 690 ~fsLIQGPPGTGKTkTI~~LL~~L 713 (1019)
...||.||||||||+++..+...+
T Consensus 39 ~~~ll~G~~G~GKT~la~~la~~l 62 (373)
T 1jr3_A 39 HAYLFSGTRGVGKTSIARLLAKGL 62 (373)
T ss_dssp SEEEEESCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 457999999999999988776643
No 136
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=93.35 E-value=0.11 Score=64.16 Aligned_cols=68 Identities=15% Similarity=0.108 Sum_probs=48.1
Q ss_pred ChHHHHHHHHHHHHhhcCCCCCCCCCCCCeeEEeCCCCCChhHHHHHHHHHHHHHhhhhhhhhhhhhcCcccccCCCCCC
Q 042849 662 NGPQLAAIQWAAIHTAAGTSSGMTKSPWPFTLVQGPPGTGKTHTVWGMLNVIHLVQYQHYYNSLLKKLAPESYKQPNESN 741 (1019)
Q Consensus 662 NeSQ~eAI~~Al~~~~~g~s~~~~k~~~~fsLIQGPPGTGKTkTI~~LL~~Lll~~~q~~~~sLlk~l~~~~~kq~~~~~ 741 (1019)
...|.++|..++.. ....+|.||+|+|||+.+-.++... ...
T Consensus 95 ~~~q~~~i~~~l~~-------------~~~vii~gpTGSGKTtllp~ll~~~-----------~~~-------------- 136 (773)
T 2xau_A 95 VHAQRDEFLKLYQN-------------NQIMVFVGETGSGKTTQIPQFVLFD-----------EMP-------------- 136 (773)
T ss_dssp GGGGHHHHHHHHHH-------------CSEEEEECCTTSSHHHHHHHHHHHH-----------HCG--------------
T ss_pred hHHHHHHHHHHHhC-------------CCeEEEECCCCCCHHHHHHHHHHHh-----------ccc--------------
Confidence 45799999988732 3578999999999998544442100 000
Q ss_pred CCcccCCchhHHhhhhhhhhhccCCCCCCCCcEEEEecCchhHHHHHHHHHh
Q 042849 742 SDNVSMGSIDEVLQNMDQNLLRTLPKLCPKPRMLVCAPSNAATDELLTRVLD 793 (1019)
Q Consensus 742 s~~~~~g~~~e~~~~~~~n~~r~~~k~~~k~RILVCAPSNaAVDEll~RLl~ 793 (1019)
...+.+|++.+|+..++.++..++.+
T Consensus 137 --------------------------~~~g~~ilvl~P~r~La~q~~~~l~~ 162 (773)
T 2xau_A 137 --------------------------HLENTQVACTQPRRVAAMSVAQRVAE 162 (773)
T ss_dssp --------------------------GGGTCEEEEEESCHHHHHHHHHHHHH
T ss_pred --------------------------cCCCceEEecCchHHHHHHHHHHHHH
Confidence 00156799999999999999998854
No 137
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.34 E-value=0.033 Score=64.82 Aligned_cols=21 Identities=48% Similarity=0.722 Sum_probs=18.3
Q ss_pred eEEeCCCCCChhHHHHHHHHH
Q 042849 692 TLVQGPPGTGKTHTVWGMLNV 712 (1019)
Q Consensus 692 sLIQGPPGTGKTkTI~~LL~~ 712 (1019)
.|+.||||||||.++.++...
T Consensus 246 ILLyGPPGTGKTlLAkAiA~e 266 (467)
T 4b4t_H 246 ILLYGPPGTGKTLCARAVANR 266 (467)
T ss_dssp EEECSCTTSSHHHHHHHHHHH
T ss_pred eEeeCCCCCcHHHHHHHHHhc
Confidence 599999999999988888653
No 138
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=93.33 E-value=0.045 Score=61.16 Aligned_cols=21 Identities=38% Similarity=0.608 Sum_probs=18.2
Q ss_pred eEEeCCCCCChhHHHHHHHHH
Q 042849 692 TLVQGPPGTGKTHTVWGMLNV 712 (1019)
Q Consensus 692 sLIQGPPGTGKTkTI~~LL~~ 712 (1019)
.||.||||||||+++.++...
T Consensus 87 iLL~GppGtGKT~la~ala~~ 107 (355)
T 2qp9_X 87 ILLYGPPGTGKSYLAKAVATE 107 (355)
T ss_dssp EEEECSTTSCHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 699999999999988877664
No 139
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=93.29 E-value=0.028 Score=61.45 Aligned_cols=20 Identities=40% Similarity=0.569 Sum_probs=17.7
Q ss_pred eEEeCCCCCChhHHHHHHHH
Q 042849 692 TLVQGPPGTGKTHTVWGMLN 711 (1019)
Q Consensus 692 sLIQGPPGTGKTkTI~~LL~ 711 (1019)
.||+||||||||+++..+..
T Consensus 48 vLl~G~~GtGKT~la~~la~ 67 (350)
T 1g8p_A 48 VLVFGDRGTGKSTAVRALAA 67 (350)
T ss_dssp EEEECCGGGCTTHHHHHHHH
T ss_pred EEEECCCCccHHHHHHHHHH
Confidence 79999999999998877765
No 140
>1w36_B RECB, exodeoxyribonuclease V beta chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 c.52.1.24 PDB: 3k70_B*
Probab=93.20 E-value=0.069 Score=68.98 Aligned_cols=62 Identities=27% Similarity=0.304 Sum_probs=41.8
Q ss_pred CeeEEeCCCCCChhHHHHHHHHHHHHHhhhhhhhhhhhhcCcccccCCCCCCCCcccCCchhHHhhhhhhhhhccCCCCC
Q 042849 690 PFTLVQGPPGTGKTHTVWGMLNVIHLVQYQHYYNSLLKKLAPESYKQPNESNSDNVSMGSIDEVLQNMDQNLLRTLPKLC 769 (1019)
Q Consensus 690 ~fsLIQGPPGTGKTkTI~~LL~~Lll~~~q~~~~sLlk~l~~~~~kq~~~~~s~~~~~g~~~e~~~~~~~n~~r~~~k~~ 769 (1019)
+-.||...+|||||+|++..+-.++ +.. . .. .+. ....
T Consensus 17 g~~lV~AsAGSGKT~~L~~r~lrLl-----------l~~---g---------~~---~~~----------------~~~~ 54 (1180)
T 1w36_B 17 GERLIEASAGTGKTFTIAALYLRLL-----------LGL---G---------GS---AAF----------------PRPL 54 (1180)
T ss_dssp SCEEEECCTTSCHHHHHHHHHHHHH-----------TTC---S---------SS---SSC----------------SSCC
T ss_pred CCEEEEECCCCCHHHHHHHHHHHHH-----------hcC---C---------cc---ccc----------------CCCC
Confidence 4469999999999999998765331 110 0 00 000 0001
Q ss_pred CCCcEEEEecCchhHHHHHHHHHh
Q 042849 770 PKPRMLVCAPSNAATDELLTRVLD 793 (1019)
Q Consensus 770 ~k~RILVCAPSNaAVDEll~RLl~ 793 (1019)
.-.+|||.+.||+|..|+-.||.+
T Consensus 55 ~~~~ILvvTFT~aAA~EMr~RI~~ 78 (1180)
T 1w36_B 55 TVEELLVVTFTEAATAELRGRIRS 78 (1180)
T ss_dssp CGGGEEEEESCHHHHHHHHHHHHH
T ss_pred CHHHEEEEeccHHHHHHHHHHHHH
Confidence 245899999999999999999964
No 141
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=93.16 E-value=0.096 Score=56.14 Aligned_cols=22 Identities=32% Similarity=0.623 Sum_probs=19.3
Q ss_pred eEEeCCCCCChhHHHHHHHHHH
Q 042849 692 TLVQGPPGTGKTHTVWGMLNVI 713 (1019)
Q Consensus 692 sLIQGPPGTGKTkTI~~LL~~L 713 (1019)
.||.||||||||+++..+...+
T Consensus 45 ~ll~G~~G~GKt~la~~l~~~l 66 (323)
T 1sxj_B 45 MIISGMPGIGKTTSVHCLAHEL 66 (323)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHh
Confidence 7999999999999988887654
No 142
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=93.10 E-value=0.044 Score=61.27 Aligned_cols=22 Identities=32% Similarity=0.478 Sum_probs=18.3
Q ss_pred CeeEEeCCCCCChhHHHHHHHH
Q 042849 690 PFTLVQGPPGTGKTHTVWGMLN 711 (1019)
Q Consensus 690 ~fsLIQGPPGTGKTkTI~~LL~ 711 (1019)
.-.||+||||||||+++..|..
T Consensus 73 ~~ill~Gp~GtGKT~la~~la~ 94 (376)
T 1um8_A 73 SNILLIGPTGSGKTLMAQTLAK 94 (376)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEECCCCCCHHHHHHHHHH
Confidence 3479999999999988877665
No 143
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=93.06 E-value=0.081 Score=57.87 Aligned_cols=22 Identities=27% Similarity=0.444 Sum_probs=17.2
Q ss_pred CeeEEeCCCCCChhHHHHHHHH
Q 042849 690 PFTLVQGPPGTGKTHTVWGMLN 711 (1019)
Q Consensus 690 ~fsLIQGPPGTGKTkTI~~LL~ 711 (1019)
.-.||+||||||||+++..|-.
T Consensus 26 ~~vLi~Ge~GtGKt~lAr~i~~ 47 (304)
T 1ojl_A 26 ATVLIHGDSGTGKELVARALHA 47 (304)
T ss_dssp SCEEEESCTTSCHHHHHHHHHH
T ss_pred CcEEEECCCCchHHHHHHHHHH
Confidence 3479999999999987666543
No 144
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=93.05 E-value=0.044 Score=58.75 Aligned_cols=22 Identities=45% Similarity=0.735 Sum_probs=19.3
Q ss_pred eEEeCCCCCChhHHHHHHHHHH
Q 042849 692 TLVQGPPGTGKTHTVWGMLNVI 713 (1019)
Q Consensus 692 sLIQGPPGTGKTkTI~~LL~~L 713 (1019)
.||.||||||||+++..+...+
T Consensus 41 ~ll~G~~G~GKt~la~~l~~~l 62 (319)
T 2chq_A 41 LLFSGPPGTGKTATAIALARDL 62 (319)
T ss_dssp EEEESSSSSSHHHHHHHHHHHH
T ss_pred EEEECcCCcCHHHHHHHHHHHh
Confidence 7999999999999988887654
No 145
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=93.01 E-value=0.044 Score=58.63 Aligned_cols=20 Identities=45% Similarity=0.825 Sum_probs=17.7
Q ss_pred eEEeCCCCCChhHHHHHHHH
Q 042849 692 TLVQGPPGTGKTHTVWGMLN 711 (1019)
Q Consensus 692 sLIQGPPGTGKTkTI~~LL~ 711 (1019)
.+|.||||||||+++..|..
T Consensus 76 vll~Gp~GtGKTtl~~~i~~ 95 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAG 95 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCcChHHHHHHHHHH
Confidence 79999999999998877765
No 146
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=92.98 E-value=0.086 Score=60.94 Aligned_cols=22 Identities=23% Similarity=0.329 Sum_probs=20.1
Q ss_pred CCcEEEEecCchhHHHHHHHHH
Q 042849 771 KPRMLVCAPSNAATDELLTRVL 792 (1019)
Q Consensus 771 k~RILVCAPSNaAVDEll~RLl 792 (1019)
+.++||++||-..+.++..++.
T Consensus 50 ~~~~lvl~Ptr~La~Q~~~~l~ 71 (459)
T 2z83_A 50 RLRTAVLAPTRVVAAEMAEALR 71 (459)
T ss_dssp TCCEEEEECSHHHHHHHHHHTT
T ss_pred CCcEEEECchHHHHHHHHHHhc
Confidence 5799999999999999999984
No 147
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=92.94 E-value=0.051 Score=60.66 Aligned_cols=22 Identities=41% Similarity=0.469 Sum_probs=18.6
Q ss_pred CeeEEeCCCCCChhHHHHHHHH
Q 042849 690 PFTLVQGPPGTGKTHTVWGMLN 711 (1019)
Q Consensus 690 ~fsLIQGPPGTGKTkTI~~LL~ 711 (1019)
.-.||+||||||||+++.+|..
T Consensus 118 ~~vLl~GppGtGKT~la~aia~ 139 (357)
T 3d8b_A 118 KGILLFGPPGTGKTLIGKCIAS 139 (357)
T ss_dssp SEEEEESSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4579999999999998877765
No 148
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=92.80 E-value=0.079 Score=62.23 Aligned_cols=23 Identities=30% Similarity=0.505 Sum_probs=19.6
Q ss_pred CeeEEeCCCCCChhHHHHHHHHH
Q 042849 690 PFTLVQGPPGTGKTHTVWGMLNV 712 (1019)
Q Consensus 690 ~fsLIQGPPGTGKTkTI~~LL~~ 712 (1019)
...||.||||||||+++..+...
T Consensus 78 ~~lLL~GppGtGKTtla~~la~~ 100 (516)
T 1sxj_A 78 RAAMLYGPPGIGKTTAAHLVAQE 100 (516)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 56899999999999988877653
No 149
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=92.77 E-value=0.054 Score=62.49 Aligned_cols=22 Identities=36% Similarity=0.504 Sum_probs=18.6
Q ss_pred CeeEEeCCCCCChhHHHHHHHH
Q 042849 690 PFTLVQGPPGTGKTHTVWGMLN 711 (1019)
Q Consensus 690 ~fsLIQGPPGTGKTkTI~~LL~ 711 (1019)
.-.||.||||||||+++.++..
T Consensus 168 ~~vLL~GppGtGKT~lA~aia~ 189 (444)
T 2zan_A 168 RGILLFGPPGTGKSYLAKAVAT 189 (444)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4469999999999998877765
No 150
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=92.69 E-value=0.093 Score=60.44 Aligned_cols=22 Identities=23% Similarity=0.378 Sum_probs=19.8
Q ss_pred CCcEEEEecCchhHHHHHHHHH
Q 042849 771 KPRMLVCAPSNAATDELLTRVL 792 (1019)
Q Consensus 771 k~RILVCAPSNaAVDEll~RLl 792 (1019)
+.++||++||...+.++..++.
T Consensus 48 ~~~~lvl~Ptr~La~Q~~~~l~ 69 (451)
T 2jlq_A 48 RLRTLILAPTRVVAAEMEEALR 69 (451)
T ss_dssp TCCEEEEESSHHHHHHHHHHTT
T ss_pred CCcEEEECCCHHHHHHHHHHhc
Confidence 5799999999999999999873
No 151
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=92.39 E-value=0.12 Score=59.26 Aligned_cols=22 Identities=18% Similarity=0.400 Sum_probs=19.4
Q ss_pred CCcEEEEecCchhHHHHHHHHH
Q 042849 771 KPRMLVCAPSNAATDELLTRVL 792 (1019)
Q Consensus 771 k~RILVCAPSNaAVDEll~RLl 792 (1019)
+.++||++||-..++++...+.
T Consensus 31 g~~~lvl~Pt~~La~Q~~~~~~ 52 (431)
T 2v6i_A 31 RLRTVILAPTRVVASEMYEALR 52 (431)
T ss_dssp TCCEEEEESSHHHHHHHHHHTT
T ss_pred CCCEEEECcHHHHHHHHHHHhC
Confidence 5699999999999999988873
No 152
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=92.31 E-value=0.1 Score=58.04 Aligned_cols=46 Identities=15% Similarity=0.037 Sum_probs=29.5
Q ss_pred hHHHHHHHHHH-HHhhcCCCCCCCCCCCCeeEE--eCCCCCChhHHHHHHHHHH
Q 042849 663 GPQLAAIQWAA-IHTAAGTSSGMTKSPWPFTLV--QGPPGTGKTHTVWGMLNVI 713 (1019)
Q Consensus 663 eSQ~eAI~~Al-~~~~~g~s~~~~k~~~~fsLI--QGPPGTGKTkTI~~LL~~L 713 (1019)
+.+.+.+..++ .....+.. ....+.+| .||||||||+++..+...+
T Consensus 28 ~~el~~l~~~l~~~~~~~~~-----~~~~~~li~i~G~~G~GKT~L~~~~~~~~ 76 (412)
T 1w5s_A 28 RGEAEALARIYLNRLLSGAG-----LSDVNMIYGSIGRVGIGKTTLAKFTVKRV 76 (412)
T ss_dssp CHHHHHHHHHHHHHHHTSSC-----BCCEEEEEECTTCCSSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHhcCCC-----CCCCEEEEeCcCcCCCCHHHHHHHHHHHH
Confidence 35566666555 33222200 12357899 9999999999998887643
No 153
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=92.27 E-value=0.12 Score=59.47 Aligned_cols=23 Identities=26% Similarity=0.342 Sum_probs=20.5
Q ss_pred CCcEEEEecCchhHHHHHHHHHh
Q 042849 771 KPRMLVCAPSNAATDELLTRVLD 793 (1019)
Q Consensus 771 k~RILVCAPSNaAVDEll~RLl~ 793 (1019)
+.++||++||...+.++..++..
T Consensus 37 ~~~~lil~Ptr~La~Q~~~~l~~ 59 (440)
T 1yks_A 37 RLRTLVLAPTRVVLSEMKEAFHG 59 (440)
T ss_dssp TCCEEEEESSHHHHHHHHHHTTT
T ss_pred CCeEEEEcchHHHHHHHHHHHhc
Confidence 56999999999999999999854
No 154
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=92.09 E-value=0.065 Score=61.80 Aligned_cols=24 Identities=29% Similarity=0.367 Sum_probs=20.0
Q ss_pred CeeEEeCCCCCChhHHHHHHHHHH
Q 042849 690 PFTLVQGPPGTGKTHTVWGMLNVI 713 (1019)
Q Consensus 690 ~fsLIQGPPGTGKTkTI~~LL~~L 713 (1019)
...||+||||||||+++.+|...+
T Consensus 131 ~~lll~Gp~G~GKTtLa~aia~~l 154 (440)
T 2z4s_A 131 NPLFIYGGVGLGKTHLLQSIGNYV 154 (440)
T ss_dssp CCEEEECSSSSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 347999999999999988877644
No 155
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=92.03 E-value=0.078 Score=59.72 Aligned_cols=22 Identities=36% Similarity=0.480 Sum_probs=18.4
Q ss_pred CeeEEeCCCCCChhHHHHHHHH
Q 042849 690 PFTLVQGPPGTGKTHTVWGMLN 711 (1019)
Q Consensus 690 ~fsLIQGPPGTGKTkTI~~LL~ 711 (1019)
.-.||+||||||||+++.+|..
T Consensus 149 ~~vLL~GppGtGKT~la~aia~ 170 (389)
T 3vfd_A 149 RGLLLFGPPGNGKTMLAKAVAA 170 (389)
T ss_dssp SEEEEESSTTSCHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4579999999999998877754
No 156
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=91.98 E-value=0.15 Score=51.76 Aligned_cols=22 Identities=27% Similarity=0.543 Sum_probs=19.3
Q ss_pred CeeEEeCCCCCChhHHHHHHHH
Q 042849 690 PFTLVQGPPGTGKTHTVWGMLN 711 (1019)
Q Consensus 690 ~fsLIQGPPGTGKTkTI~~LL~ 711 (1019)
.+.+|.||||+|||+++..++.
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~ 25 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVE 25 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999998877765
No 157
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=91.87 E-value=0.32 Score=58.59 Aligned_cols=22 Identities=14% Similarity=0.320 Sum_probs=18.6
Q ss_pred CCcEEEEecCchhHHHHHHHHH
Q 042849 771 KPRMLVCAPSNAATDELLTRVL 792 (1019)
Q Consensus 771 k~RILVCAPSNaAVDEll~RLl 792 (1019)
+.+|+||+||+.-..++..-+.
T Consensus 51 ~~kvli~t~T~~l~~Qi~~el~ 72 (620)
T 4a15_A 51 KLKVLYLVRTNSQEEQVIKELR 72 (620)
T ss_dssp TCEEEEEESSHHHHHHHHHHHH
T ss_pred CCeEEEECCCHHHHHHHHHHHH
Confidence 5699999999999888877663
No 158
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=91.76 E-value=0.068 Score=58.63 Aligned_cols=22 Identities=41% Similarity=0.679 Sum_probs=19.0
Q ss_pred eEEeCCCCCChhHHHHHHHHHH
Q 042849 692 TLVQGPPGTGKTHTVWGMLNVI 713 (1019)
Q Consensus 692 sLIQGPPGTGKTkTI~~LL~~L 713 (1019)
.||.||||||||+++..+...+
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~l 60 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLESI 60 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 7999999999999988877643
No 159
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=91.71 E-value=0.18 Score=58.55 Aligned_cols=22 Identities=36% Similarity=0.610 Sum_probs=18.5
Q ss_pred eEEeCCCCCChhHHHHHHHHHH
Q 042849 692 TLVQGPPGTGKTHTVWGMLNVI 713 (1019)
Q Consensus 692 sLIQGPPGTGKTkTI~~LL~~L 713 (1019)
.||.||||||||+++-+|...+
T Consensus 204 ~LL~G~pG~GKT~la~~la~~l 225 (468)
T 3pxg_A 204 PVLIGEPGVGKTAIAEGLAQQI 225 (468)
T ss_dssp EEEESCTTTTTHHHHHHHHHHH
T ss_pred eEEECCCCCCHHHHHHHHHHHH
Confidence 5999999999999888776643
No 160
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=91.50 E-value=0.21 Score=55.09 Aligned_cols=24 Identities=21% Similarity=0.450 Sum_probs=20.8
Q ss_pred CeeEEeCCCCCChhHHHHHHHHHH
Q 042849 690 PFTLVQGPPGTGKTHTVWGMLNVI 713 (1019)
Q Consensus 690 ~fsLIQGPPGTGKTkTI~~LL~~L 713 (1019)
..-|+.||||||||+++..+...+
T Consensus 25 ~a~L~~G~~G~GKt~~a~~la~~l 48 (334)
T 1a5t_A 25 HALLIQALPGMGDDALIYALSRYL 48 (334)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eeEEEECCCCchHHHHHHHHHHHH
Confidence 467999999999999998887754
No 161
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=91.27 E-value=0.082 Score=59.03 Aligned_cols=22 Identities=27% Similarity=0.377 Sum_probs=19.1
Q ss_pred CeeEEeCCCCCChhHHHHHHHH
Q 042849 690 PFTLVQGPPGTGKTHTVWGMLN 711 (1019)
Q Consensus 690 ~fsLIQGPPGTGKTkTI~~LL~ 711 (1019)
.+.||.||||||||++...+..
T Consensus 124 sviLI~GpPGsGKTtLAlqlA~ 145 (331)
T 2vhj_A 124 GMVIVTGKGNSGKTPLVHALGE 145 (331)
T ss_dssp EEEEEECSCSSSHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHH
Confidence 5689999999999998888764
No 162
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=91.11 E-value=0.094 Score=61.34 Aligned_cols=20 Identities=45% Similarity=0.725 Sum_probs=17.6
Q ss_pred eEEeCCCCCChhHHHHHHHH
Q 042849 692 TLVQGPPGTGKTHTVWGMLN 711 (1019)
Q Consensus 692 sLIQGPPGTGKTkTI~~LL~ 711 (1019)
.||.||||||||+++.++..
T Consensus 52 vLL~GppGtGKT~Laraia~ 71 (476)
T 2ce7_A 52 ILLVGPPGTGKTLLARAVAG 71 (476)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 69999999999998877765
No 163
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=91.06 E-value=0.27 Score=53.37 Aligned_cols=22 Identities=32% Similarity=0.514 Sum_probs=18.8
Q ss_pred CeeEEeCCCCCChhHHHHHHHH
Q 042849 690 PFTLVQGPPGTGKTHTVWGMLN 711 (1019)
Q Consensus 690 ~fsLIQGPPGTGKTkTI~~LL~ 711 (1019)
-+.+|-||||+||||++..|..
T Consensus 34 ~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 34 TAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp EEEEEECCTTSCTHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999988877764
No 164
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=91.02 E-value=0.24 Score=60.70 Aligned_cols=46 Identities=24% Similarity=0.342 Sum_probs=28.3
Q ss_pred hHHHHHHHHHHHHhhcCCCCCCCCCCCC--eeEEeCCCCCChhHHHHHHHHH
Q 042849 663 GPQLAAIQWAAIHTAAGTSSGMTKSPWP--FTLVQGPPGTGKTHTVWGMLNV 712 (1019)
Q Consensus 663 eSQ~eAI~~Al~~~~~g~s~~~~k~~~~--fsLIQGPPGTGKTkTI~~LL~~ 712 (1019)
+...++|..++.....+... ...+ -.||.||||||||+++.+|...
T Consensus 497 ~~a~~~l~~~i~~~~~~~~~----~~~p~~~~Ll~Gp~GtGKT~lA~ala~~ 544 (758)
T 3pxi_A 497 DEAVVAVAKAVRRARAGLKD----PKRPIGSFIFLGPTGVGKTELARALAES 544 (758)
T ss_dssp HHHHHHHHHHHHHHTTTCSC----TTSCSEEEEEESCTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcccCC----CCCCceEEEEECCCCCCHHHHHHHHHHH
Confidence 44455555555433322221 1223 4899999999999988877654
No 165
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=90.90 E-value=0.29 Score=53.74 Aligned_cols=24 Identities=25% Similarity=0.331 Sum_probs=20.4
Q ss_pred CCCeeEEeCCCCCChhHHHHHHHH
Q 042849 688 PWPFTLVQGPPGTGKTHTVWGMLN 711 (1019)
Q Consensus 688 ~~~fsLIQGPPGTGKTkTI~~LL~ 711 (1019)
+..+.+|.||||+|||+....++.
T Consensus 67 ~G~l~li~G~pG~GKTtl~l~ia~ 90 (315)
T 3bh0_A 67 RRNFVLIAARPSMGKTAFALKQAK 90 (315)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHH
Confidence 457999999999999998877764
No 166
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=90.88 E-value=0.12 Score=61.15 Aligned_cols=25 Identities=32% Similarity=0.535 Sum_probs=20.3
Q ss_pred CCCeeEEeCCCCCChhHHHHHHHHH
Q 042849 688 PWPFTLVQGPPGTGKTHTVWGMLNV 712 (1019)
Q Consensus 688 ~~~fsLIQGPPGTGKTkTI~~LL~~ 712 (1019)
+.++.||.||||||||+++..|...
T Consensus 107 ~g~~vll~Gp~GtGKTtlar~ia~~ 131 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLAKSIAKS 131 (543)
T ss_dssp CSCEEEEESSSSSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3468999999999999887776553
No 167
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=90.86 E-value=0.13 Score=52.88 Aligned_cols=24 Identities=25% Similarity=0.147 Sum_probs=20.7
Q ss_pred CCCeeEEeCCCCCChhHHHHHHHH
Q 042849 688 PWPFTLVQGPPGTGKTHTVWGMLN 711 (1019)
Q Consensus 688 ~~~fsLIQGPPGTGKTkTI~~LL~ 711 (1019)
...+++|-||||+|||+++..|+.
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~ 46 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAV 46 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHH
Confidence 347899999999999998887765
No 168
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=90.83 E-value=0.22 Score=52.56 Aligned_cols=25 Identities=24% Similarity=0.182 Sum_probs=21.3
Q ss_pred CCCeeEEeCCCCCChhHHHHHHHHH
Q 042849 688 PWPFTLVQGPPGTGKTHTVWGMLNV 712 (1019)
Q Consensus 688 ~~~fsLIQGPPGTGKTkTI~~LL~~ 712 (1019)
+..+.||.||||+|||+++..++..
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~r 35 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLHR 35 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCcHHHHHHHHHHH
Confidence 4579999999999999988887753
No 169
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=90.76 E-value=0.14 Score=51.78 Aligned_cols=24 Identities=33% Similarity=0.288 Sum_probs=20.1
Q ss_pred CCCeeEEeCCCCCChhHHHHHHHH
Q 042849 688 PWPFTLVQGPPGTGKTHTVWGMLN 711 (1019)
Q Consensus 688 ~~~fsLIQGPPGTGKTkTI~~LL~ 711 (1019)
+..+.+|-||||+|||+++..++.
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999998777653
No 170
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=90.70 E-value=0.12 Score=49.77 Aligned_cols=20 Identities=30% Similarity=0.507 Sum_probs=16.7
Q ss_pred CeeEEeCCCCCChhHHHHHH
Q 042849 690 PFTLVQGPPGTGKTHTVWGM 709 (1019)
Q Consensus 690 ~fsLIQGPPGTGKTkTI~~L 709 (1019)
.+-+|-||||+||||+...|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 36789999999999877665
No 171
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=90.64 E-value=0.29 Score=59.73 Aligned_cols=24 Identities=17% Similarity=0.372 Sum_probs=20.5
Q ss_pred cEEEEecCchhHHHHHHHHHhcCc
Q 042849 773 RMLVCAPSNAATDELLTRVLDRGF 796 (1019)
Q Consensus 773 RILVCAPSNaAVDEll~RLl~~Gi 796 (1019)
+.++|+|+-..+.++..++.+.|+
T Consensus 181 ~gl~l~PtR~LA~Qi~~~l~~~g~ 204 (677)
T 3rc3_A 181 SGVYCGPLKLLAHEIFEKSNAAGV 204 (677)
T ss_dssp SEEEEESSHHHHHHHHHHHHHTTC
T ss_pred CeEEEeCHHHHHHHHHHHHHhcCC
Confidence 459999999999999999977553
No 172
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=90.55 E-value=0.14 Score=50.17 Aligned_cols=21 Identities=29% Similarity=0.493 Sum_probs=17.2
Q ss_pred eeEEeCCCCCChhHHHHHHHH
Q 042849 691 FTLVQGPPGTGKTHTVWGMLN 711 (1019)
Q Consensus 691 fsLIQGPPGTGKTkTI~~LL~ 711 (1019)
+.+|-||||+||||.+..|..
T Consensus 4 ~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEecCCCCCHHHHHHHHHh
Confidence 679999999999987766543
No 173
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=90.46 E-value=0.29 Score=59.95 Aligned_cols=48 Identities=25% Similarity=0.300 Sum_probs=29.1
Q ss_pred hHHHHHHHHHHHHhhcCCCCCCCCCCCCeeEEeCCCCCChhHHHHHHHHH
Q 042849 663 GPQLAAIQWAAIHTAAGTSSGMTKSPWPFTLVQGPPGTGKTHTVWGMLNV 712 (1019)
Q Consensus 663 eSQ~eAI~~Al~~~~~g~s~~~~k~~~~fsLIQGPPGTGKTkTI~~LL~~ 712 (1019)
+...++|..++.....|.+.. ..+.+-.||.||||||||+++..+...
T Consensus 464 ~~~~~~l~~~i~~~~~g~~~~--~~p~~~~ll~G~~GtGKT~la~~la~~ 511 (758)
T 1r6b_X 464 DKAIEALTEAIKMARAGLGHE--HKPVGSFLFAGPTGVGKTEVTVQLSKA 511 (758)
T ss_dssp HHHHHHHHHHHHHHHTTCSCT--TSCSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcccCCC--CCCceEEEEECCCCCcHHHHHHHHHHH
Confidence 445555555554433343210 112234799999999999988777653
No 174
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=90.42 E-value=0.13 Score=51.27 Aligned_cols=22 Identities=27% Similarity=0.460 Sum_probs=18.1
Q ss_pred CCeeEEeCCCCCChhHHHHHHH
Q 042849 689 WPFTLVQGPPGTGKTHTVWGML 710 (1019)
Q Consensus 689 ~~fsLIQGPPGTGKTkTI~~LL 710 (1019)
..+.+|-||||+||||++..|.
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La 30 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALA 30 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 4588999999999998766554
No 175
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=90.39 E-value=0.26 Score=56.64 Aligned_cols=41 Identities=24% Similarity=0.406 Sum_probs=31.3
Q ss_pred CCChHHHHHHHHHHHHhhcCCCCCCCCCCCCeeEEeCCCCCChhHHHHHHHHH
Q 042849 660 TFNGPQLAAIQWAAIHTAAGTSSGMTKSPWPFTLVQGPPGTGKTHTVWGMLNV 712 (1019)
Q Consensus 660 ~LNeSQ~eAI~~Al~~~~~g~s~~~~k~~~~fsLIQGPPGTGKTkTI~~LL~~ 712 (1019)
.+...+..++..++. .+.++.+|-||.|+|||||+..|+..
T Consensus 150 g~~~~~~~~L~~l~~------------~~ggii~I~GpnGSGKTTlL~allg~ 190 (418)
T 1p9r_A 150 GMTAHNHDNFRRLIK------------RPHGIILVTGPTGSGKSTTLYAGLQE 190 (418)
T ss_dssp CCCHHHHHHHHHHHT------------SSSEEEEEECSTTSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH------------hcCCeEEEECCCCCCHHHHHHHHHhh
Confidence 455667777776541 14578999999999999999988873
No 176
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=90.37 E-value=0.13 Score=60.28 Aligned_cols=21 Identities=48% Similarity=0.670 Sum_probs=17.6
Q ss_pred eeEEeCCCCCChhHHHHHHHH
Q 042849 691 FTLVQGPPGTGKTHTVWGMLN 711 (1019)
Q Consensus 691 fsLIQGPPGTGKTkTI~~LL~ 711 (1019)
-.||+||||||||+++.+|..
T Consensus 240 ~vLL~GppGtGKT~lAraia~ 260 (489)
T 3hu3_A 240 GILLYGPPGTGKTLIARAVAN 260 (489)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred cEEEECcCCCCHHHHHHHHHH
Confidence 369999999999998877654
No 177
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=90.15 E-value=0.12 Score=60.66 Aligned_cols=20 Identities=45% Similarity=0.825 Sum_probs=17.5
Q ss_pred eEEeCCCCCChhHHHHHHHH
Q 042849 692 TLVQGPPGTGKTHTVWGMLN 711 (1019)
Q Consensus 692 sLIQGPPGTGKTkTI~~LL~ 711 (1019)
.||.||||||||+++.+|..
T Consensus 67 vLL~GppGtGKTtLaraIa~ 86 (499)
T 2dhr_A 67 VLLVGPPGVGKTHLARAVAG 86 (499)
T ss_dssp EEEECSSSSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 69999999999998877765
No 178
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=90.14 E-value=0.25 Score=59.58 Aligned_cols=22 Identities=23% Similarity=0.378 Sum_probs=19.9
Q ss_pred CCcEEEEecCchhHHHHHHHHH
Q 042849 771 KPRMLVCAPSNAATDELLTRVL 792 (1019)
Q Consensus 771 k~RILVCAPSNaAVDEll~RLl 792 (1019)
+.++||++||...++++..++.
T Consensus 215 ~~~vLvl~PtreLa~Qi~~~l~ 236 (618)
T 2whx_A 215 RLRTLILAPTRVVAAEMEEALR 236 (618)
T ss_dssp TCCEEEEESSHHHHHHHHHHTT
T ss_pred CCeEEEEcChHHHHHHHHHHhc
Confidence 5799999999999999999874
No 179
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=90.13 E-value=0.42 Score=61.01 Aligned_cols=82 Identities=12% Similarity=0.061 Sum_probs=51.5
Q ss_pred CCChHHHHHHHHHHHHhhcCCCCCCCCCCCCeeEEeCCCCCChhHHHHHHHHHHHHHhhhhhhhhhhhhcCcccccCCCC
Q 042849 660 TFNGPQLAAIQWAAIHTAAGTSSGMTKSPWPFTLVQGPPGTGKTHTVWGMLNVIHLVQYQHYYNSLLKKLAPESYKQPNE 739 (1019)
Q Consensus 660 ~LNeSQ~eAI~~Al~~~~~g~s~~~~k~~~~fsLIQGPPGTGKTkTI~~LL~~Lll~~~q~~~~sLlk~l~~~~~kq~~~ 739 (1019)
.+.+.|..||..++.+...+.....-.....-.|||.|.|||||.|+..++.. +.
T Consensus 271 ~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~~~l~~l-------------l~------------ 325 (1038)
T 2w00_A 271 VMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTSFKAARL-------------AT------------ 325 (1038)
T ss_dssp ECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHHHHHHHH-------------HT------------
T ss_pred cCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHHHHHHHH-------------HH------------
Confidence 47789999999877432111000000000123799999999999997555421 10
Q ss_pred CCCCcccCCchhHHhhhhhhhhhccCCCCCCCCcEEEEecCchhHHHHHHHHHh
Q 042849 740 SNSDNVSMGSIDEVLQNMDQNLLRTLPKLCPKPRMLVCAPSNAATDELLTRVLD 793 (1019)
Q Consensus 740 ~~s~~~~~g~~~e~~~~~~~n~~r~~~k~~~k~RILVCAPSNaAVDEll~RLl~ 793 (1019)
......++||.+|++.-++++...+..
T Consensus 326 ---------------------------~~~~~~rvLvlvpr~eL~~Q~~~~f~~ 352 (1038)
T 2w00_A 326 ---------------------------ELDFIDKVFFVVDRKDLDYQTMKEYQR 352 (1038)
T ss_dssp ---------------------------TCTTCCEEEEEECGGGCCHHHHHHHHT
T ss_pred ---------------------------hcCCCceEEEEeCcHHHHHHHHHHHHH
Confidence 001146999999999999999888754
No 180
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=90.01 E-value=0.17 Score=48.99 Aligned_cols=21 Identities=14% Similarity=0.237 Sum_probs=17.1
Q ss_pred eeEEeCCCCCChhHHHHHHHH
Q 042849 691 FTLVQGPPGTGKTHTVWGMLN 711 (1019)
Q Consensus 691 fsLIQGPPGTGKTkTI~~LL~ 711 (1019)
+.+|-||||+||||+...|..
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999987666554
No 181
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=89.87 E-value=0.3 Score=55.05 Aligned_cols=24 Identities=17% Similarity=0.158 Sum_probs=20.6
Q ss_pred CCCeeEEeCCCCCChhHHHHHHHH
Q 042849 688 PWPFTLVQGPPGTGKTHTVWGMLN 711 (1019)
Q Consensus 688 ~~~fsLIQGPPGTGKTkTI~~LL~ 711 (1019)
+..+++|-||||+|||++...++.
T Consensus 60 ~G~i~~I~GppGsGKSTLal~la~ 83 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTLALHAIA 83 (356)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 346999999999999998877765
No 182
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=89.64 E-value=0.18 Score=49.78 Aligned_cols=21 Identities=29% Similarity=0.521 Sum_probs=17.3
Q ss_pred eeEEeCCCCCChhHHHHHHHH
Q 042849 691 FTLVQGPPGTGKTHTVWGMLN 711 (1019)
Q Consensus 691 fsLIQGPPGTGKTkTI~~LL~ 711 (1019)
+-+|.||||+||||.+..|..
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 568999999999987766654
No 183
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=89.64 E-value=0.18 Score=52.00 Aligned_cols=24 Identities=29% Similarity=0.303 Sum_probs=20.7
Q ss_pred CCCeeEEeCCCCCChhHHHHHHHH
Q 042849 688 PWPFTLVQGPPGTGKTHTVWGMLN 711 (1019)
Q Consensus 688 ~~~fsLIQGPPGTGKTkTI~~LL~ 711 (1019)
+..+.+|-||+|+|||+++..|+.
T Consensus 29 ~G~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 29 EGTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHH
Confidence 357999999999999998887764
No 184
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=89.52 E-value=0.2 Score=50.57 Aligned_cols=21 Identities=33% Similarity=0.609 Sum_probs=18.0
Q ss_pred eEEeCCCCCChhHHHHHHHHH
Q 042849 692 TLVQGPPGTGKTHTVWGMLNV 712 (1019)
Q Consensus 692 sLIQGPPGTGKTkTI~~LL~~ 712 (1019)
..|.||+|+||||++..|...
T Consensus 3 i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 3 IIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 689999999999988777763
No 185
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=89.48 E-value=0.33 Score=59.56 Aligned_cols=21 Identities=33% Similarity=0.575 Sum_probs=17.9
Q ss_pred eEEeCCCCCChhHHHHHHHHH
Q 042849 692 TLVQGPPGTGKTHTVWGMLNV 712 (1019)
Q Consensus 692 sLIQGPPGTGKTkTI~~LL~~ 712 (1019)
.||.||||||||+++-++...
T Consensus 204 vLL~G~pGtGKT~la~~la~~ 224 (758)
T 3pxi_A 204 PVLIGEPGVGKTAIAEGLAQQ 224 (758)
T ss_dssp EEEESCTTTTTHHHHHHHHHH
T ss_pred eEEECCCCCCHHHHHHHHHHH
Confidence 699999999999888777654
No 186
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=89.39 E-value=0.29 Score=52.86 Aligned_cols=36 Identities=22% Similarity=0.356 Sum_probs=27.0
Q ss_pred hHHHHHHHHHHHHhhcCCCCCCCCCCCCeeEEeCCCCCChhHHHHHHHH
Q 042849 663 GPQLAAIQWAAIHTAAGTSSGMTKSPWPFTLVQGPPGTGKTHTVWGMLN 711 (1019)
Q Consensus 663 eSQ~eAI~~Al~~~~~g~s~~~~k~~~~fsLIQGPPGTGKTkTI~~LL~ 711 (1019)
+.+.+.+..++.. .++.+|.||+|+|||+++..++.
T Consensus 18 ~~el~~L~~~l~~-------------~~~v~i~G~~G~GKT~Ll~~~~~ 53 (350)
T 2qen_A 18 EEESRKLEESLEN-------------YPLTLLLGIRRVGKSSLLRAFLN 53 (350)
T ss_dssp HHHHHHHHHHHHH-------------CSEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc-------------CCeEEEECCCcCCHHHHHHHHHH
Confidence 4556677666521 26799999999999999888765
No 187
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=89.38 E-value=0.46 Score=53.15 Aligned_cols=24 Identities=21% Similarity=0.343 Sum_probs=20.8
Q ss_pred CCCeeEEeCCCCCChhHHHHHHHH
Q 042849 688 PWPFTLVQGPPGTGKTHTVWGMLN 711 (1019)
Q Consensus 688 ~~~fsLIQGPPGTGKTkTI~~LL~ 711 (1019)
+..+.+|-|+||+|||+++..++.
T Consensus 45 ~G~LiiIaG~pG~GKTt~al~ia~ 68 (338)
T 4a1f_A 45 KGSLVIIGARPSMGKTSLMMNMVL 68 (338)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHH
Confidence 457999999999999998887765
No 188
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=89.35 E-value=0.21 Score=49.25 Aligned_cols=22 Identities=27% Similarity=0.460 Sum_probs=17.8
Q ss_pred CeeEEeCCCCCChhHHHHHHHH
Q 042849 690 PFTLVQGPPGTGKTHTVWGMLN 711 (1019)
Q Consensus 690 ~fsLIQGPPGTGKTkTI~~LL~ 711 (1019)
.+-+|.||||+||||++..|..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999987666654
No 189
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=89.31 E-value=0.24 Score=49.04 Aligned_cols=22 Identities=36% Similarity=0.549 Sum_probs=18.0
Q ss_pred CeeEEeCCCCCChhHHHHHHHH
Q 042849 690 PFTLVQGPPGTGKTHTVWGMLN 711 (1019)
Q Consensus 690 ~fsLIQGPPGTGKTkTI~~LL~ 711 (1019)
.+.+|.||||+|||++...|..
T Consensus 12 ~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 12 PNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEEeCCCCCHHHHHHHHHH
Confidence 5679999999999987766654
No 190
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=89.17 E-value=0.21 Score=53.39 Aligned_cols=24 Identities=17% Similarity=0.231 Sum_probs=20.7
Q ss_pred CCCeeEEeCCCCCChhHHHHHHHH
Q 042849 688 PWPFTLVQGPPGTGKTHTVWGMLN 711 (1019)
Q Consensus 688 ~~~fsLIQGPPGTGKTkTI~~LL~ 711 (1019)
...+.+|-||||+|||+++..|+.
T Consensus 29 ~G~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 29 AGTVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHH
Confidence 347899999999999998887775
No 191
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=89.17 E-value=0.35 Score=56.40 Aligned_cols=24 Identities=13% Similarity=-0.071 Sum_probs=20.7
Q ss_pred CCCeeEEeCCCCCChhHHHHHHHH
Q 042849 688 PWPFTLVQGPPGTGKTHTVWGMLN 711 (1019)
Q Consensus 688 ~~~fsLIQGPPGTGKTkTI~~LL~ 711 (1019)
+..+++|.||||+|||+....++.
T Consensus 241 ~G~l~li~G~pG~GKT~lal~~a~ 264 (503)
T 1q57_A 241 GGEVIMVTSGSGMVMSTFVRQQAL 264 (503)
T ss_dssp TTCEEEEEESSCHHHHHHHHHHHH
T ss_pred CCeEEEEeecCCCCchHHHHHHHH
Confidence 457999999999999998877764
No 192
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=89.13 E-value=0.33 Score=59.09 Aligned_cols=23 Identities=22% Similarity=0.316 Sum_probs=20.5
Q ss_pred CCcEEEEecCchhHHHHHHHHHh
Q 042849 771 KPRMLVCAPSNAATDELLTRVLD 793 (1019)
Q Consensus 771 k~RILVCAPSNaAVDEll~RLl~ 793 (1019)
+.++||++||-..+.++..++..
T Consensus 270 ~~~~lilaPTr~La~Q~~~~l~~ 292 (673)
T 2wv9_A 270 RLRTAVLAPTRVVAAEMAEALRG 292 (673)
T ss_dssp TCCEEEEESSHHHHHHHHHHTTT
T ss_pred CCcEEEEccHHHHHHHHHHHHhc
Confidence 57999999999999999999854
No 193
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=89.03 E-value=0.26 Score=49.96 Aligned_cols=23 Identities=30% Similarity=0.478 Sum_probs=19.0
Q ss_pred CCeeEEeCCCCCChhHHHHHHHH
Q 042849 689 WPFTLVQGPPGTGKTHTVWGMLN 711 (1019)
Q Consensus 689 ~~fsLIQGPPGTGKTkTI~~LL~ 711 (1019)
..+..|-||||+||||++..|..
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46889999999999987766654
No 194
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=89.00 E-value=0.29 Score=58.56 Aligned_cols=22 Identities=36% Similarity=0.499 Sum_probs=18.8
Q ss_pred CeeEEeCCCCCChhHHHHHHHH
Q 042849 690 PFTLVQGPPGTGKTHTVWGMLN 711 (1019)
Q Consensus 690 ~fsLIQGPPGTGKTkTI~~LL~ 711 (1019)
...||+||||||||+++..|..
T Consensus 61 ~~vll~Gp~GtGKTtlar~ia~ 82 (604)
T 3k1j_A 61 RHVLLIGEPGTGKSMLGQAMAE 82 (604)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEeCCCCCHHHHHHHHhc
Confidence 4689999999999988877765
No 195
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=88.94 E-value=0.21 Score=49.04 Aligned_cols=22 Identities=18% Similarity=0.350 Sum_probs=17.6
Q ss_pred CeeEEeCCCCCChhHHHHHHHH
Q 042849 690 PFTLVQGPPGTGKTHTVWGMLN 711 (1019)
Q Consensus 690 ~fsLIQGPPGTGKTkTI~~LL~ 711 (1019)
.+.+|-||||+||||+...|..
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4679999999999987666543
No 196
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=88.89 E-value=0.26 Score=48.80 Aligned_cols=22 Identities=23% Similarity=0.188 Sum_probs=17.8
Q ss_pred CeeEEeCCCCCChhHHHHHHHH
Q 042849 690 PFTLVQGPPGTGKTHTVWGMLN 711 (1019)
Q Consensus 690 ~fsLIQGPPGTGKTkTI~~LL~ 711 (1019)
.+.+|.||||+|||++...|..
T Consensus 6 ~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4678999999999987766654
No 197
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=88.81 E-value=0.27 Score=53.96 Aligned_cols=23 Identities=9% Similarity=-0.073 Sum_probs=19.7
Q ss_pred CCeeEEeCCCCCChhHHHHHHHH
Q 042849 689 WPFTLVQGPPGTGKTHTVWGMLN 711 (1019)
Q Consensus 689 ~~fsLIQGPPGTGKTkTI~~LL~ 711 (1019)
.+.-|+.||||||||+++..+..
T Consensus 18 ~~~~Lf~Gp~G~GKtt~a~~la~ 40 (305)
T 2gno_A 18 GISILINGEDLSYPREVSLELPE 40 (305)
T ss_dssp SEEEEEECSSSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 36789999999999998877765
No 198
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=88.79 E-value=0.64 Score=53.57 Aligned_cols=24 Identities=21% Similarity=0.296 Sum_probs=20.8
Q ss_pred CCCeeEEeCCCCCChhHHHHHHHH
Q 042849 688 PWPFTLVQGPPGTGKTHTVWGMLN 711 (1019)
Q Consensus 688 ~~~fsLIQGPPGTGKTkTI~~LL~ 711 (1019)
+..+.+|-||||+|||+++..++.
T Consensus 202 ~G~liiI~G~pG~GKTtl~l~ia~ 225 (454)
T 2r6a_A 202 RSDLIIVAARPSVGKTAFALNIAQ 225 (454)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999998887765
No 199
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=88.61 E-value=0.22 Score=48.65 Aligned_cols=21 Identities=24% Similarity=0.363 Sum_probs=16.9
Q ss_pred CeeEEeCCCCCChhHHHHHHH
Q 042849 690 PFTLVQGPPGTGKTHTVWGML 710 (1019)
Q Consensus 690 ~fsLIQGPPGTGKTkTI~~LL 710 (1019)
.+.+|.||||+||||+...|.
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La 25 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLA 25 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 468999999999997665554
No 200
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=88.54 E-value=0.29 Score=49.51 Aligned_cols=23 Identities=22% Similarity=0.156 Sum_probs=18.8
Q ss_pred CCeeEEeCCCCCChhHHHHHHHH
Q 042849 689 WPFTLVQGPPGTGKTHTVWGMLN 711 (1019)
Q Consensus 689 ~~fsLIQGPPGTGKTkTI~~LL~ 711 (1019)
..+.+|-||||+|||++...|..
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 35789999999999987766654
No 201
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=88.53 E-value=0.27 Score=50.31 Aligned_cols=24 Identities=21% Similarity=0.365 Sum_probs=19.9
Q ss_pred CCCeeEEeCCCCCChhHHHHHHHH
Q 042849 688 PWPFTLVQGPPGTGKTHTVWGMLN 711 (1019)
Q Consensus 688 ~~~fsLIQGPPGTGKTkTI~~LL~ 711 (1019)
+..+..|-||+|+|||+++..|+.
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~ 30 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFK 30 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEECcCCCCHHHHHHHHHh
Confidence 346889999999999998877664
No 202
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=88.52 E-value=0.18 Score=62.66 Aligned_cols=20 Identities=50% Similarity=0.790 Sum_probs=17.1
Q ss_pred eEEeCCCCCChhHHHHHHHH
Q 042849 692 TLVQGPPGTGKTHTVWGMLN 711 (1019)
Q Consensus 692 sLIQGPPGTGKTkTI~~LL~ 711 (1019)
.|+.||||||||.++.++..
T Consensus 241 ILL~GPPGTGKT~LAraiA~ 260 (806)
T 3cf2_A 241 ILLYGPPGTGKTLIARAVAN 260 (806)
T ss_dssp EEEECCTTSCHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 59999999999988877654
No 203
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=88.51 E-value=0.33 Score=56.15 Aligned_cols=24 Identities=25% Similarity=0.241 Sum_probs=20.9
Q ss_pred CCeeEEeCCCCCChhHHHHHHHHH
Q 042849 689 WPFTLVQGPPGTGKTHTVWGMLNV 712 (1019)
Q Consensus 689 ~~fsLIQGPPGTGKTkTI~~LL~~ 712 (1019)
..+.+|-||||+|||||+..|...
T Consensus 97 ~~vI~lvG~~GsGKTTt~~kLA~~ 120 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGKLAYF 120 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 468899999999999999988763
No 204
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=88.47 E-value=0.22 Score=49.63 Aligned_cols=22 Identities=27% Similarity=0.558 Sum_probs=18.1
Q ss_pred CeeEEeCCCCCChhHHHHHHHH
Q 042849 690 PFTLVQGPPGTGKTHTVWGMLN 711 (1019)
Q Consensus 690 ~fsLIQGPPGTGKTkTI~~LL~ 711 (1019)
.+.+|-||||+||||++..|..
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 3678999999999988777653
No 205
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=88.45 E-value=0.21 Score=50.86 Aligned_cols=24 Identities=29% Similarity=0.271 Sum_probs=20.6
Q ss_pred CCCeeEEeCCCCCChhHHHHHHHH
Q 042849 688 PWPFTLVQGPPGTGKTHTVWGMLN 711 (1019)
Q Consensus 688 ~~~fsLIQGPPGTGKTkTI~~LL~ 711 (1019)
+..+..|-||||+|||+++..|+.
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l~g 47 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTLAV 47 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 347999999999999998877765
No 206
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=88.45 E-value=0.66 Score=53.32 Aligned_cols=24 Identities=21% Similarity=0.403 Sum_probs=20.7
Q ss_pred CCCeeEEeCCCCCChhHHHHHHHH
Q 042849 688 PWPFTLVQGPPGTGKTHTVWGMLN 711 (1019)
Q Consensus 688 ~~~fsLIQGPPGTGKTkTI~~LL~ 711 (1019)
+..+.+|-||||+|||+....++.
T Consensus 199 ~G~l~ii~G~pg~GKT~lal~ia~ 222 (444)
T 2q6t_A 199 PGSLNIIAARPAMGKTAFALTIAQ 222 (444)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHH
Confidence 457999999999999998877765
No 207
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=88.41 E-value=0.48 Score=59.04 Aligned_cols=49 Identities=24% Similarity=0.276 Sum_probs=29.5
Q ss_pred ChHHHHHHHHHHHHhhcCCCCCCCCCCCCeeEEeCCCCCChhHHHHHHHHH
Q 042849 662 NGPQLAAIQWAAIHTAAGTSSGMTKSPWPFTLVQGPPGTGKTHTVWGMLNV 712 (1019)
Q Consensus 662 NeSQ~eAI~~Al~~~~~g~s~~~~k~~~~fsLIQGPPGTGKTkTI~~LL~~ 712 (1019)
.+..+++|..++....+|.+.. ..+.+-.||.||||||||+++..|...
T Consensus 563 ~~~a~~~l~~~i~~~~~g~~~~--~~p~~~vLl~Gp~GtGKT~lA~~la~~ 611 (854)
T 1qvr_A 563 QDEAIRAVADAIRRARAGLKDP--NRPIGSFLFLGPTGVGKTELAKTLAAT 611 (854)
T ss_dssp CHHHHHHHHHHHHHHGGGCSCS--SSCSEEEEEBSCSSSSHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhcccCCC--CCCceEEEEECCCCCCHHHHHHHHHHH
Confidence 3455666666664433332210 012235799999999999887777653
No 208
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=88.35 E-value=0.85 Score=55.34 Aligned_cols=68 Identities=26% Similarity=0.293 Sum_probs=49.9
Q ss_pred CCChHHHHHHHHHHHHhhcCCCCCCCCCCCCeeEEeCCCCCChhHHHHHHHHHHHHHhhhhhhhhhhhhcCcccccCCCC
Q 042849 660 TFNGPQLAAIQWAAIHTAAGTSSGMTKSPWPFTLVQGPPGTGKTHTVWGMLNVIHLVQYQHYYNSLLKKLAPESYKQPNE 739 (1019)
Q Consensus 660 ~LNeSQ~eAI~~Al~~~~~g~s~~~~k~~~~fsLIQGPPGTGKTkTI~~LL~~Lll~~~q~~~~sLlk~l~~~~~kq~~~ 739 (1019)
..+..|-.||...+.....| ....++.|.+|+|||.|++.++..+
T Consensus 8 ~~~~~q~~ai~~l~~~~~~~---------~~~~~l~g~tgs~kt~~~a~~~~~~-------------------------- 52 (664)
T 1c4o_A 8 SPKGDQPKAIAGLVEALRDG---------ERFVTLLGATGTGKTVTMAKVIEAL-------------------------- 52 (664)
T ss_dssp CCCTTHHHHHHHHHHHHHTT---------CSEEEEEECTTSCHHHHHHHHHHHH--------------------------
T ss_pred CCCCCChHHHHHHHHHHhcC---------CCcEEEEcCCCcHHHHHHHHHHHHh--------------------------
Confidence 56778888887644221111 1235789999999999998876421
Q ss_pred CCCCcccCCchhHHhhhhhhhhhccCCCCCCCCcEEEEecCchhHHHHHHHHHh
Q 042849 740 SNSDNVSMGSIDEVLQNMDQNLLRTLPKLCPKPRMLVCAPSNAATDELLTRVLD 793 (1019)
Q Consensus 740 ~~s~~~~~g~~~e~~~~~~~n~~r~~~k~~~k~RILVCAPSNaAVDEll~RLl~ 793 (1019)
+.++||++|+.....++...|..
T Consensus 53 -------------------------------~~~~lvv~~~~~~A~ql~~el~~ 75 (664)
T 1c4o_A 53 -------------------------------GRPALVLAPNKILAAQLAAEFRE 75 (664)
T ss_dssp -------------------------------TCCEEEEESSHHHHHHHHHHHHH
T ss_pred -------------------------------CCCEEEEecCHHHHHHHHHHHHH
Confidence 34699999999999999999854
No 209
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=88.35 E-value=0.4 Score=58.70 Aligned_cols=24 Identities=33% Similarity=0.374 Sum_probs=19.8
Q ss_pred CeeEEeCCCCCChhHHHHHHHHHH
Q 042849 690 PFTLVQGPPGTGKTHTVWGMLNVI 713 (1019)
Q Consensus 690 ~fsLIQGPPGTGKTkTI~~LL~~L 713 (1019)
.-.||.||||||||+++.++...+
T Consensus 208 ~~vlL~G~~GtGKT~la~~la~~l 231 (758)
T 1r6b_X 208 NNPLLVGESGVGKTAIAEGLAWRI 231 (758)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEcCCCCCHHHHHHHHHHHH
Confidence 346999999999999888877644
No 210
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=88.34 E-value=0.39 Score=50.96 Aligned_cols=22 Identities=23% Similarity=0.394 Sum_probs=18.9
Q ss_pred eEEeCCCCCChhHHHHHHHHHH
Q 042849 692 TLVQGPPGTGKTHTVWGMLNVI 713 (1019)
Q Consensus 692 sLIQGPPGTGKTkTI~~LL~~L 713 (1019)
.++.||||+||||+.+.+...+
T Consensus 9 I~~~~kgGvGKTt~a~~la~~l 30 (228)
T 2r8r_A 9 VFLGAAPGVGKTYAMLQAAHAQ 30 (228)
T ss_dssp EEEESSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHHH
Confidence 6889999999999988887643
No 211
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=88.31 E-value=0.25 Score=48.98 Aligned_cols=22 Identities=32% Similarity=0.510 Sum_probs=18.2
Q ss_pred CeeEEeCCCCCChhHHHHHHHH
Q 042849 690 PFTLVQGPPGTGKTHTVWGMLN 711 (1019)
Q Consensus 690 ~fsLIQGPPGTGKTkTI~~LL~ 711 (1019)
.+.+|-||||+||||++..|..
T Consensus 6 ~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 6 ALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999987766654
No 212
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=88.30 E-value=0.19 Score=58.26 Aligned_cols=21 Identities=33% Similarity=0.523 Sum_probs=17.7
Q ss_pred eeEEeCCCCCChhHHHHHHHH
Q 042849 691 FTLVQGPPGTGKTHTVWGMLN 711 (1019)
Q Consensus 691 fsLIQGPPGTGKTkTI~~LL~ 711 (1019)
-.|+.||||||||+++.+|..
T Consensus 52 ~iLl~GppGtGKT~lar~lA~ 72 (444)
T 1g41_A 52 NILMIGPTGVGKTEIARRLAK 72 (444)
T ss_dssp CEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEcCCCCCHHHHHHHHHH
Confidence 369999999999988877665
No 213
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=88.30 E-value=0.27 Score=49.29 Aligned_cols=22 Identities=18% Similarity=0.271 Sum_probs=18.2
Q ss_pred CeeEEeCCCCCChhHHHHHHHH
Q 042849 690 PFTLVQGPPGTGKTHTVWGMLN 711 (1019)
Q Consensus 690 ~fsLIQGPPGTGKTkTI~~LL~ 711 (1019)
.+.+|.||||+||||.+..|..
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHH
Confidence 4679999999999987776654
No 214
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=88.28 E-value=0.34 Score=56.20 Aligned_cols=24 Identities=33% Similarity=0.346 Sum_probs=21.1
Q ss_pred CCeeEEeCCCCCChhHHHHHHHHH
Q 042849 689 WPFTLVQGPPGTGKTHTVWGMLNV 712 (1019)
Q Consensus 689 ~~fsLIQGPPGTGKTkTI~~LL~~ 712 (1019)
..+.+|-||||+|||||+..|...
T Consensus 100 p~vIlivG~~G~GKTTt~~kLA~~ 123 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAKLARY 123 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECcCCCCHHHHHHHHHHH
Confidence 458899999999999999998863
No 215
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=88.26 E-value=0.22 Score=53.82 Aligned_cols=23 Identities=39% Similarity=0.416 Sum_probs=20.2
Q ss_pred CeeEEeCCCCCChhHHHHHHHHH
Q 042849 690 PFTLVQGPPGTGKTHTVWGMLNV 712 (1019)
Q Consensus 690 ~fsLIQGPPGTGKTkTI~~LL~~ 712 (1019)
++.+|.||+|+|||+++..+...
T Consensus 31 ~~v~i~G~~G~GKT~L~~~~~~~ 53 (357)
T 2fna_A 31 PITLVLGLRRTGKSSIIKIGINE 53 (357)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHHh
Confidence 58999999999999999887753
No 216
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=88.11 E-value=0.21 Score=55.64 Aligned_cols=23 Identities=17% Similarity=0.228 Sum_probs=19.7
Q ss_pred CCeeEEeCCCCCChhHHHHHHHH
Q 042849 689 WPFTLVQGPPGTGKTHTVWGMLN 711 (1019)
Q Consensus 689 ~~fsLIQGPPGTGKTkTI~~LL~ 711 (1019)
.++++|.||||+|||++...++.
T Consensus 28 ~GiteI~G~pGsGKTtL~Lq~~~ 50 (333)
T 3io5_A 28 SGLLILAGPSKSFKSNFGLTMVS 50 (333)
T ss_dssp SEEEEEEESSSSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999998877765
No 217
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=88.01 E-value=0.27 Score=55.75 Aligned_cols=24 Identities=29% Similarity=0.429 Sum_probs=20.1
Q ss_pred CCCeeEEeCCCCCChhHHHHHHHH
Q 042849 688 PWPFTLVQGPPGTGKTHTVWGMLN 711 (1019)
Q Consensus 688 ~~~fsLIQGPPGTGKTkTI~~LL~ 711 (1019)
+..+.+|.||||||||+++..|..
T Consensus 168 ~~~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 168 KKRYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHh
Confidence 346899999999999998877765
No 218
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=88.00 E-value=0.34 Score=47.58 Aligned_cols=23 Identities=17% Similarity=0.309 Sum_probs=18.5
Q ss_pred CCeeEEeCCCCCChhHHHHHHHH
Q 042849 689 WPFTLVQGPPGTGKTHTVWGMLN 711 (1019)
Q Consensus 689 ~~fsLIQGPPGTGKTkTI~~LL~ 711 (1019)
..+.+|.||||+|||++...|..
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH
Confidence 35789999999999987766543
No 219
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=87.88 E-value=0.21 Score=61.96 Aligned_cols=20 Identities=45% Similarity=0.694 Sum_probs=17.3
Q ss_pred eEEeCCCCCChhHHHHHHHH
Q 042849 692 TLVQGPPGTGKTHTVWGMLN 711 (1019)
Q Consensus 692 sLIQGPPGTGKTkTI~~LL~ 711 (1019)
.|+.||||||||.+..++..
T Consensus 514 vLl~GPPGtGKT~lAkaiA~ 533 (806)
T 3cf2_A 514 VLFYGPPGCGKTLLAKAIAN 533 (806)
T ss_dssp CEEESSTTSSHHHHHHHHHH
T ss_pred EEEecCCCCCchHHHHHHHH
Confidence 59999999999988877755
No 220
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=87.87 E-value=0.3 Score=52.52 Aligned_cols=24 Identities=21% Similarity=0.130 Sum_probs=20.8
Q ss_pred CCCeeEEeCCCCCChhHHHHHHHH
Q 042849 688 PWPFTLVQGPPGTGKTHTVWGMLN 711 (1019)
Q Consensus 688 ~~~fsLIQGPPGTGKTkTI~~LL~ 711 (1019)
+..+.+|-||||+|||+++..|..
T Consensus 34 ~G~~~~i~G~~G~GKTTl~~~ia~ 57 (296)
T 1cr0_A 34 GGEVIMVTSGSGMGKSTFVRQQAL 57 (296)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHH
Confidence 457999999999999998887765
No 221
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=87.84 E-value=0.49 Score=54.70 Aligned_cols=24 Identities=25% Similarity=0.331 Sum_probs=20.9
Q ss_pred CCCeeEEeCCCCCChhHHHHHHHH
Q 042849 688 PWPFTLVQGPPGTGKTHTVWGMLN 711 (1019)
Q Consensus 688 ~~~fsLIQGPPGTGKTkTI~~LL~ 711 (1019)
+..+.+|-|+||+|||+....++.
T Consensus 196 ~G~liiIaG~pG~GKTtlal~ia~ 219 (444)
T 3bgw_A 196 RRNFVLIAARPSMGKTAFALKQAK 219 (444)
T ss_dssp SSCEEEEEECSSSSHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCChHHHHHHHHH
Confidence 457999999999999998888765
No 222
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=87.56 E-value=0.39 Score=48.38 Aligned_cols=21 Identities=33% Similarity=0.593 Sum_probs=17.2
Q ss_pred eeEEeCCCCCChhHHHHHHHH
Q 042849 691 FTLVQGPPGTGKTHTVWGMLN 711 (1019)
Q Consensus 691 fsLIQGPPGTGKTkTI~~LL~ 711 (1019)
+.+|.||||+|||++...|..
T Consensus 22 ~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 22 RVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 778999999999987665544
No 223
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=87.46 E-value=0.31 Score=54.63 Aligned_cols=24 Identities=21% Similarity=0.261 Sum_probs=20.8
Q ss_pred CCCeeEEeCCCCCChhHHHHHHHH
Q 042849 688 PWPFTLVQGPPGTGKTHTVWGMLN 711 (1019)
Q Consensus 688 ~~~fsLIQGPPGTGKTkTI~~LL~ 711 (1019)
+..+++|.||||+|||++...++.
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~ 83 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVA 83 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 357899999999999998888775
No 224
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=87.32 E-value=0.34 Score=48.54 Aligned_cols=23 Identities=22% Similarity=0.398 Sum_probs=18.5
Q ss_pred CCeeEEeCCCCCChhHHHHHHHH
Q 042849 689 WPFTLVQGPPGTGKTHTVWGMLN 711 (1019)
Q Consensus 689 ~~fsLIQGPPGTGKTkTI~~LL~ 711 (1019)
..+..|-||||+||||++..|..
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~ 28 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFE 28 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 35889999999999987766543
No 225
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=87.27 E-value=0.62 Score=49.16 Aligned_cols=22 Identities=27% Similarity=0.220 Sum_probs=18.0
Q ss_pred CeeEEeCCCCCChhHHHHHHHH
Q 042849 690 PFTLVQGPPGTGKTHTVWGMLN 711 (1019)
Q Consensus 690 ~fsLIQGPPGTGKTkTI~~LL~ 711 (1019)
.+.+|.||||+|||++...|..
T Consensus 33 ~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 33 IAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp EEEEEESCGGGTTHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999987766654
No 226
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=87.25 E-value=0.37 Score=48.30 Aligned_cols=23 Identities=26% Similarity=0.517 Sum_probs=19.1
Q ss_pred CCeeEEeCCCCCChhHHHHHHHH
Q 042849 689 WPFTLVQGPPGTGKTHTVWGMLN 711 (1019)
Q Consensus 689 ~~fsLIQGPPGTGKTkTI~~LL~ 711 (1019)
..+..|-||+|+||||++..|..
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~ 29 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVK 29 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECcCCCCHHHHHHHHHh
Confidence 46889999999999988776654
No 227
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=87.12 E-value=0.34 Score=51.46 Aligned_cols=21 Identities=29% Similarity=0.513 Sum_probs=17.8
Q ss_pred eeEEeCCCCCChhHHHHHHHH
Q 042849 691 FTLVQGPPGTGKTHTVWGMLN 711 (1019)
Q Consensus 691 fsLIQGPPGTGKTkTI~~LL~ 711 (1019)
+.+|-||||+|||++...|..
T Consensus 3 li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 578999999999988777754
No 228
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=86.92 E-value=0.38 Score=47.50 Aligned_cols=22 Identities=27% Similarity=0.462 Sum_probs=17.6
Q ss_pred CeeEEeCCCCCChhHHHHHHHH
Q 042849 690 PFTLVQGPPGTGKTHTVWGMLN 711 (1019)
Q Consensus 690 ~fsLIQGPPGTGKTkTI~~LL~ 711 (1019)
.+.+|-||||+||||+...|..
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4678999999999987666544
No 229
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=86.84 E-value=0.36 Score=48.74 Aligned_cols=22 Identities=23% Similarity=0.285 Sum_probs=18.1
Q ss_pred CeeEEeCCCCCChhHHHHHHHH
Q 042849 690 PFTLVQGPPGTGKTHTVWGMLN 711 (1019)
Q Consensus 690 ~fsLIQGPPGTGKTkTI~~LL~ 711 (1019)
.+.+|-||||+||||++..|..
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999987766654
No 230
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=86.83 E-value=0.41 Score=47.16 Aligned_cols=22 Identities=27% Similarity=0.508 Sum_probs=17.6
Q ss_pred CeeEEeCCCCCChhHHHHHHHH
Q 042849 690 PFTLVQGPPGTGKTHTVWGMLN 711 (1019)
Q Consensus 690 ~fsLIQGPPGTGKTkTI~~LL~ 711 (1019)
.+-+|-||||+|||++...|..
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4778999999999987665543
No 231
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=86.72 E-value=0.39 Score=47.44 Aligned_cols=22 Identities=27% Similarity=0.520 Sum_probs=17.4
Q ss_pred CeeEEeCCCCCChhHHHHHHHH
Q 042849 690 PFTLVQGPPGTGKTHTVWGMLN 711 (1019)
Q Consensus 690 ~fsLIQGPPGTGKTkTI~~LL~ 711 (1019)
.+-+|.||||+||||+...|..
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3678999999999987666543
No 232
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=86.70 E-value=0.31 Score=53.60 Aligned_cols=24 Identities=25% Similarity=0.234 Sum_probs=20.4
Q ss_pred CCCeeEEeCCCCCChhHHHHHHHH
Q 042849 688 PWPFTLVQGPPGTGKTHTVWGMLN 711 (1019)
Q Consensus 688 ~~~fsLIQGPPGTGKTkTI~~LL~ 711 (1019)
+..+++|.||||+|||++...++.
T Consensus 106 ~G~i~~i~G~~GsGKT~la~~la~ 129 (324)
T 2z43_A 106 TRTMTEFFGEFGSGKTQLCHQLSV 129 (324)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHhHHHHHHHH
Confidence 457999999999999998877764
No 233
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=86.55 E-value=0.36 Score=54.26 Aligned_cols=26 Identities=42% Similarity=0.777 Sum_probs=22.5
Q ss_pred CCCeeEEeCCCCCChhHHHHHHHHHH
Q 042849 688 PWPFTLVQGPPGTGKTHTVWGMLNVI 713 (1019)
Q Consensus 688 ~~~fsLIQGPPGTGKTkTI~~LL~~L 713 (1019)
+.++.+|-||.|+|||||+..|+..+
T Consensus 122 ~~g~i~I~GptGSGKTTlL~~l~g~~ 147 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKSTTLAAMLDYL 147 (356)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 45799999999999999999888743
No 234
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=86.46 E-value=0.4 Score=47.22 Aligned_cols=21 Identities=19% Similarity=0.254 Sum_probs=16.5
Q ss_pred eeEEeCCCCCChhHHHHHHHH
Q 042849 691 FTLVQGPPGTGKTHTVWGMLN 711 (1019)
Q Consensus 691 fsLIQGPPGTGKTkTI~~LL~ 711 (1019)
..+|.||||+|||++...|..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 468889999999987666544
No 235
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=86.38 E-value=0.41 Score=47.67 Aligned_cols=21 Identities=19% Similarity=0.219 Sum_probs=16.9
Q ss_pred eeEEeCCCCCChhHHHHHHHH
Q 042849 691 FTLVQGPPGTGKTHTVWGMLN 711 (1019)
Q Consensus 691 fsLIQGPPGTGKTkTI~~LL~ 711 (1019)
+.+|-||||+||||++..|..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 468999999999987766654
No 236
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=86.38 E-value=0.4 Score=48.65 Aligned_cols=24 Identities=33% Similarity=0.500 Sum_probs=19.4
Q ss_pred CCCeeEEeCCCCCChhHHHHHHHH
Q 042849 688 PWPFTLVQGPPGTGKTHTVWGMLN 711 (1019)
Q Consensus 688 ~~~fsLIQGPPGTGKTkTI~~LL~ 711 (1019)
...+.+|-||||+|||+++..|..
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~ 34 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLS 34 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHH
T ss_pred cCCEEEEECCCCCCHHHHHHHHHH
Confidence 346789999999999987766654
No 237
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=86.37 E-value=0.42 Score=47.40 Aligned_cols=22 Identities=27% Similarity=0.487 Sum_probs=17.9
Q ss_pred CeeEEeCCCCCChhHHHHHHHH
Q 042849 690 PFTLVQGPPGTGKTHTVWGMLN 711 (1019)
Q Consensus 690 ~fsLIQGPPGTGKTkTI~~LL~ 711 (1019)
.+-+|-||||+||||+...|..
T Consensus 10 ~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 10 NIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999987666544
No 238
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=86.34 E-value=0.43 Score=47.61 Aligned_cols=23 Identities=17% Similarity=0.333 Sum_probs=19.2
Q ss_pred CCeeEEeCCCCCChhHHHHHHHH
Q 042849 689 WPFTLVQGPPGTGKTHTVWGMLN 711 (1019)
Q Consensus 689 ~~fsLIQGPPGTGKTkTI~~LL~ 711 (1019)
..+..|-||+|+|||+++..|..
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~ 27 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLIT 27 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 35889999999999988777664
No 239
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=86.19 E-value=0.35 Score=60.02 Aligned_cols=24 Identities=46% Similarity=0.610 Sum_probs=19.0
Q ss_pred CCCeeEEeCCCCCChhHHHHHHHH
Q 042849 688 PWPFTLVQGPPGTGKTHTVWGMLN 711 (1019)
Q Consensus 688 ~~~fsLIQGPPGTGKTkTI~~LL~ 711 (1019)
+....||.||||||||+++.+|..
T Consensus 237 ~~~~vLL~Gp~GtGKTtLarala~ 260 (806)
T 1ypw_A 237 PPRGILLYGPPGTGKTLIARAVAN 260 (806)
T ss_dssp CCCEEEECSCTTSSHHHHHHHHHH
T ss_pred CCCeEEEECcCCCCHHHHHHHHHH
Confidence 345689999999999987766654
No 240
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=86.18 E-value=0.43 Score=53.68 Aligned_cols=25 Identities=20% Similarity=0.283 Sum_probs=21.2
Q ss_pred CCCeeEEeCCCCCChhHHHHHHHHH
Q 042849 688 PWPFTLVQGPPGTGKTHTVWGMLNV 712 (1019)
Q Consensus 688 ~~~fsLIQGPPGTGKTkTI~~LL~~ 712 (1019)
+..+.+|.||||+|||++...++..
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~ 86 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAA 86 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3478999999999999998887753
No 241
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=86.05 E-value=0.45 Score=48.15 Aligned_cols=24 Identities=21% Similarity=0.239 Sum_probs=19.3
Q ss_pred CCCeeEEeCCCCCChhHHHHHHHH
Q 042849 688 PWPFTLVQGPPGTGKTHTVWGMLN 711 (1019)
Q Consensus 688 ~~~fsLIQGPPGTGKTkTI~~LL~ 711 (1019)
+..+..|-||+|+||||+...|..
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~ 47 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQ 47 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 346889999999999987766655
No 242
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=86.00 E-value=0.27 Score=61.01 Aligned_cols=24 Identities=38% Similarity=0.426 Sum_probs=19.7
Q ss_pred CCeeEEeCCCCCChhHHHHHHHHH
Q 042849 689 WPFTLVQGPPGTGKTHTVWGMLNV 712 (1019)
Q Consensus 689 ~~fsLIQGPPGTGKTkTI~~LL~~ 712 (1019)
....||.||||||||+++.+|...
T Consensus 511 ~~~vLL~GppGtGKT~Lakala~~ 534 (806)
T 1ypw_A 511 SKGVLFYGPPGCGKTLLAKAIANE 534 (806)
T ss_dssp CCCCCCBCCTTSSHHHHHHHHHHH
T ss_pred CceeEEECCCCCCHHHHHHHHHHH
Confidence 455799999999999988777653
No 243
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=85.99 E-value=0.45 Score=47.30 Aligned_cols=23 Identities=26% Similarity=0.370 Sum_probs=18.9
Q ss_pred CCeeEEeCCCCCChhHHHHHHHH
Q 042849 689 WPFTLVQGPPGTGKTHTVWGMLN 711 (1019)
Q Consensus 689 ~~fsLIQGPPGTGKTkTI~~LL~ 711 (1019)
..+.+|.|+||+|||+++..|..
T Consensus 13 ~~~i~l~G~~GsGKsT~~~~L~~ 35 (186)
T 2yvu_A 13 GIVVWLTGLPGSGKTTIATRLAD 35 (186)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH
Confidence 35789999999999987776655
No 244
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=85.98 E-value=0.4 Score=50.18 Aligned_cols=21 Identities=29% Similarity=0.545 Sum_probs=18.3
Q ss_pred CeeEEeCCCCCChhHHHHHHH
Q 042849 690 PFTLVQGPPGTGKTHTVWGML 710 (1019)
Q Consensus 690 ~fsLIQGPPGTGKTkTI~~LL 710 (1019)
.+..|.||||+||||++..|.
T Consensus 28 ~~i~l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 28 LRAVILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 688999999999998877765
No 245
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=85.97 E-value=0.46 Score=46.98 Aligned_cols=22 Identities=27% Similarity=0.515 Sum_probs=16.9
Q ss_pred CeeEEeCCCCCChhHHHHHHHH
Q 042849 690 PFTLVQGPPGTGKTHTVWGMLN 711 (1019)
Q Consensus 690 ~fsLIQGPPGTGKTkTI~~LL~ 711 (1019)
++.+|.||||+|||++...|..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4578999999999976655543
No 246
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=85.97 E-value=0.32 Score=53.14 Aligned_cols=24 Identities=25% Similarity=0.203 Sum_probs=20.4
Q ss_pred CCCeeEEeCCCCCChhHHHHHHHH
Q 042849 688 PWPFTLVQGPPGTGKTHTVWGMLN 711 (1019)
Q Consensus 688 ~~~fsLIQGPPGTGKTkTI~~LL~ 711 (1019)
+..+++|.||||+|||++...++.
T Consensus 97 ~g~i~~i~G~~gsGKT~la~~la~ 120 (322)
T 2i1q_A 97 SQSVTEFAGVFGSGKTQIMHQSCV 120 (322)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999998877764
No 247
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=85.62 E-value=0.33 Score=60.46 Aligned_cols=22 Identities=41% Similarity=0.652 Sum_probs=18.9
Q ss_pred eEEeCCCCCChhHHHHHHHHHH
Q 042849 692 TLVQGPPGTGKTHTVWGMLNVI 713 (1019)
Q Consensus 692 sLIQGPPGTGKTkTI~~LL~~L 713 (1019)
.||.||||||||+++.++...+
T Consensus 194 vlL~G~pG~GKT~la~~la~~l 215 (854)
T 1qvr_A 194 PVLIGEPGVGKTAIVEGLAQRI 215 (854)
T ss_dssp CEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEcCCCCCHHHHHHHHHHHH
Confidence 5999999999999888887644
No 248
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=85.55 E-value=0.42 Score=47.75 Aligned_cols=22 Identities=36% Similarity=0.441 Sum_probs=17.4
Q ss_pred CeeEEeCCCCCChhHHHHHHHH
Q 042849 690 PFTLVQGPPGTGKTHTVWGMLN 711 (1019)
Q Consensus 690 ~fsLIQGPPGTGKTkTI~~LL~ 711 (1019)
.+-+|.||||+|||++...|..
T Consensus 11 ~~I~l~G~~GsGKSTv~~~La~ 32 (184)
T 1y63_A 11 INILITGTPGTGKTSMAEMIAA 32 (184)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4679999999999976655543
No 249
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=85.54 E-value=0.48 Score=47.06 Aligned_cols=21 Identities=24% Similarity=0.439 Sum_probs=16.9
Q ss_pred eeEEeCCCCCChhHHHHHHHH
Q 042849 691 FTLVQGPPGTGKTHTVWGMLN 711 (1019)
Q Consensus 691 fsLIQGPPGTGKTkTI~~LL~ 711 (1019)
|-.|-||||+||||.+..|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQ 22 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 468899999999987766654
No 250
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=85.46 E-value=0.38 Score=48.94 Aligned_cols=20 Identities=25% Similarity=0.425 Sum_probs=15.6
Q ss_pred eEEeCCCCCChhHHHHHHHH
Q 042849 692 TLVQGPPGTGKTHTVWGMLN 711 (1019)
Q Consensus 692 sLIQGPPGTGKTkTI~~LL~ 711 (1019)
-+|-||||+||||+...|..
T Consensus 3 I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 3 LVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 47899999999977665543
No 251
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=85.44 E-value=0.51 Score=48.12 Aligned_cols=24 Identities=21% Similarity=0.374 Sum_probs=19.7
Q ss_pred CCCeeEEeCCCCCChhHHHHHHHH
Q 042849 688 PWPFTLVQGPPGTGKTHTVWGMLN 711 (1019)
Q Consensus 688 ~~~fsLIQGPPGTGKTkTI~~LL~ 711 (1019)
...+..|-||+|+||||++..|..
T Consensus 21 ~g~~v~I~G~sGsGKSTl~~~l~~ 44 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTLSNPLAA 44 (208)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 346889999999999988776665
No 252
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=85.41 E-value=1.8 Score=58.11 Aligned_cols=70 Identities=20% Similarity=0.277 Sum_probs=48.5
Q ss_pred cCCChHHHHHHHHHHHHhhcCCCCCCCCCCCCeeEEeCCCCCChhHHHHHHHHHHHHHhhhhhhhhhhhhcCcccccCCC
Q 042849 659 RTFNGPQLAAIQWAAIHTAAGTSSGMTKSPWPFTLVQGPPGTGKTHTVWGMLNVIHLVQYQHYYNSLLKKLAPESYKQPN 738 (1019)
Q Consensus 659 ~~LNeSQ~eAI~~Al~~~~~g~s~~~~k~~~~fsLIQGPPGTGKTkTI~~LL~~Lll~~~q~~~~sLlk~l~~~~~kq~~ 738 (1019)
..||+-|.+||...+ + ++.=.||.+|.|+|||... . +.++. .|++
T Consensus 925 ~~fnpiQ~q~~~~l~-~------------~~~nvlv~APTGSGKTlia-e-lail~---------~l~~----------- 969 (1724)
T 4f92_B 925 PFFNPIQTQVFNTVY-N------------SDDNVFVGAPTGSGKTICA-E-FAILR---------MLLQ----------- 969 (1724)
T ss_dssp SBCCHHHHHHHHHHH-S------------CCSCEEEECCTTSCCHHHH-H-HHHHH---------HHHH-----------
T ss_pred CCCCHHHHHHHHHHh-c------------CCCcEEEEeCCCCCchHHH-H-HHHHH---------HHHh-----------
Confidence 358999999998654 2 1233799999999999633 2 21111 1111
Q ss_pred CCCCCcccCCchhHHhhhhhhhhhccCCCCCCCCcEEEEecCchhHHHHHHHHHh
Q 042849 739 ESNSDNVSMGSIDEVLQNMDQNLLRTLPKLCPKPRMLVCAPSNAATDELLTRVLD 793 (1019)
Q Consensus 739 ~~~s~~~~~g~~~e~~~~~~~n~~r~~~k~~~k~RILVCAPSNaAVDEll~RLl~ 793 (1019)
..+.|+|+.+|+-+-+.|+...+.+
T Consensus 970 ------------------------------~~~~kavyi~P~raLa~q~~~~~~~ 994 (1724)
T 4f92_B 970 ------------------------------SSEGRCVYITPMEALAEQVYMDWYE 994 (1724)
T ss_dssp ------------------------------CTTCCEEEECSCHHHHHHHHHHHHH
T ss_pred ------------------------------CCCCEEEEEcChHHHHHHHHHHHHH
Confidence 1356899999999999999988753
No 253
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=85.27 E-value=0.44 Score=48.40 Aligned_cols=20 Identities=25% Similarity=0.509 Sum_probs=15.8
Q ss_pred eEEeCCCCCChhHHHHHHHH
Q 042849 692 TLVQGPPGTGKTHTVWGMLN 711 (1019)
Q Consensus 692 sLIQGPPGTGKTkTI~~LL~ 711 (1019)
-+|-||||+||||+...|..
T Consensus 3 I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 3 IVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 47899999999977666544
No 254
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=85.26 E-value=0.52 Score=46.06 Aligned_cols=24 Identities=25% Similarity=0.311 Sum_probs=20.4
Q ss_pred CCeeEEeCCCCCChhHHHHHHHHH
Q 042849 689 WPFTLVQGPPGTGKTHTVWGMLNV 712 (1019)
Q Consensus 689 ~~fsLIQGPPGTGKTkTI~~LL~~ 712 (1019)
.++.+|-||.|+|||+++-+|..+
T Consensus 23 ~g~~~I~G~NGsGKStil~Ai~~~ 46 (149)
T 1f2t_A 23 EGINLIIGQNGSGKSSLLDAILVG 46 (149)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999988777654
No 255
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=85.07 E-value=0.58 Score=47.89 Aligned_cols=22 Identities=27% Similarity=0.460 Sum_probs=17.7
Q ss_pred CeeEEeCCCCCChhHHHHHHHH
Q 042849 690 PFTLVQGPPGTGKTHTVWGMLN 711 (1019)
Q Consensus 690 ~fsLIQGPPGTGKTkTI~~LL~ 711 (1019)
.+-+|-||||+||||.+..|..
T Consensus 5 ~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 5 IRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4679999999999987666654
No 256
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=85.01 E-value=0.51 Score=50.59 Aligned_cols=25 Identities=36% Similarity=0.662 Sum_probs=21.7
Q ss_pred CCCeeEEeCCCCCChhHHHHHHHHH
Q 042849 688 PWPFTLVQGPPGTGKTHTVWGMLNV 712 (1019)
Q Consensus 688 ~~~fsLIQGPPGTGKTkTI~~LL~~ 712 (1019)
+..+.+|-||.|+||||++..|+..
T Consensus 24 ~g~~v~i~Gp~GsGKSTll~~l~g~ 48 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTIASMIDY 48 (261)
T ss_dssp SSEEEEEECSTTCSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCccHHHHHHHHHHh
Confidence 4579999999999999999888763
No 257
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=85.00 E-value=0.51 Score=48.98 Aligned_cols=22 Identities=27% Similarity=0.477 Sum_probs=18.0
Q ss_pred CeeEEeCCCCCChhHHHHHHHH
Q 042849 690 PFTLVQGPPGTGKTHTVWGMLN 711 (1019)
Q Consensus 690 ~fsLIQGPPGTGKTkTI~~LL~ 711 (1019)
.+-+|.||||+||||.+..|..
T Consensus 17 ~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4679999999999987766654
No 258
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=84.99 E-value=0.56 Score=47.43 Aligned_cols=24 Identities=21% Similarity=0.082 Sum_probs=20.8
Q ss_pred CeeEEeCCCCCChhHHHHHHHHHH
Q 042849 690 PFTLVQGPPGTGKTHTVWGMLNVI 713 (1019)
Q Consensus 690 ~fsLIQGPPGTGKTkTI~~LL~~L 713 (1019)
++..|-||+|+|||+++..|+..+
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l 28 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAA 28 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhh
Confidence 578999999999999998888643
No 259
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=84.92 E-value=0.55 Score=47.33 Aligned_cols=22 Identities=14% Similarity=0.358 Sum_probs=18.4
Q ss_pred CeeEEeCCCCCChhHHHHHHHH
Q 042849 690 PFTLVQGPPGTGKTHTVWGMLN 711 (1019)
Q Consensus 690 ~fsLIQGPPGTGKTkTI~~LL~ 711 (1019)
.+-+|-||||+||||++..|..
T Consensus 10 ~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 10 ALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999987776654
No 260
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=84.88 E-value=0.23 Score=59.49 Aligned_cols=19 Identities=32% Similarity=0.480 Sum_probs=15.7
Q ss_pred eEEeCCCCCChhHHHHHHH
Q 042849 692 TLVQGPPGTGKTHTVWGML 710 (1019)
Q Consensus 692 sLIQGPPGTGKTkTI~~LL 710 (1019)
.||.||||||||.++..+.
T Consensus 330 vLL~GppGtGKT~LAr~la 348 (595)
T 3f9v_A 330 ILIIGDPGTAKSQMLQFIS 348 (595)
T ss_dssp EEEEESSCCTHHHHHHSSS
T ss_pred eEEECCCchHHHHHHHHHH
Confidence 6999999999998665543
No 261
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=84.88 E-value=0.48 Score=53.46 Aligned_cols=25 Identities=36% Similarity=0.662 Sum_probs=21.8
Q ss_pred CCCeeEEeCCCCCChhHHHHHHHHH
Q 042849 688 PWPFTLVQGPPGTGKTHTVWGMLNV 712 (1019)
Q Consensus 688 ~~~fsLIQGPPGTGKTkTI~~LL~~ 712 (1019)
+..+.+|-||+|+|||||+..|+..
T Consensus 135 ~g~~i~ivG~~GsGKTTll~~l~~~ 159 (372)
T 2ewv_A 135 KMGLILVTGPTGSGKSTTIASMIDY 159 (372)
T ss_dssp SSEEEEEECSSSSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 3478999999999999999988874
No 262
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=84.87 E-value=0.44 Score=52.99 Aligned_cols=24 Identities=25% Similarity=0.142 Sum_probs=20.3
Q ss_pred CCCeeEEeCCCCCChhHHHHHHHH
Q 042849 688 PWPFTLVQGPPGTGKTHTVWGMLN 711 (1019)
Q Consensus 688 ~~~fsLIQGPPGTGKTkTI~~LL~ 711 (1019)
+..+++|-||||+|||++...++.
T Consensus 121 ~G~i~~I~G~~GsGKTtla~~la~ 144 (343)
T 1v5w_A 121 SMAITEAFGEFRTGKTQLSHTLCV 144 (343)
T ss_dssp SSEEEEEECCTTCTHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 456999999999999998877764
No 263
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=84.87 E-value=0.54 Score=45.72 Aligned_cols=21 Identities=19% Similarity=0.215 Sum_probs=16.7
Q ss_pred eeEEeCCCCCChhHHHHHHHH
Q 042849 691 FTLVQGPPGTGKTHTVWGMLN 711 (1019)
Q Consensus 691 fsLIQGPPGTGKTkTI~~LL~ 711 (1019)
+.+|.||||+|||++...|..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 578999999999976655543
No 264
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=84.83 E-value=0.9 Score=46.58 Aligned_cols=22 Identities=18% Similarity=0.300 Sum_probs=19.7
Q ss_pred CeeEEeCCCCCChhHHHHHHHH
Q 042849 690 PFTLVQGPPGTGKTHTVWGMLN 711 (1019)
Q Consensus 690 ~fsLIQGPPGTGKTkTI~~LL~ 711 (1019)
.+.+|.||+|+|||+.+..++.
T Consensus 9 ~i~v~~G~mgsGKTT~ll~~a~ 30 (191)
T 1xx6_A 9 WVEVIVGPMYSGKSEELIRRIR 30 (191)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCcHHHHHHHHHH
Confidence 5899999999999998888765
No 265
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=84.75 E-value=0.54 Score=51.37 Aligned_cols=24 Identities=25% Similarity=0.444 Sum_probs=20.7
Q ss_pred CCeeEEeCCCCCChhHHHHHHHHH
Q 042849 689 WPFTLVQGPPGTGKTHTVWGMLNV 712 (1019)
Q Consensus 689 ~~fsLIQGPPGTGKTkTI~~LL~~ 712 (1019)
..+.+|-||+|+|||||+..|...
T Consensus 105 g~vi~lvG~~GsGKTTl~~~LA~~ 128 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAKLAAI 128 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 468899999999999999888763
No 266
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=84.71 E-value=0.37 Score=47.35 Aligned_cols=21 Identities=43% Similarity=0.762 Sum_probs=13.1
Q ss_pred CeeEEeCCCCCChhHHHHHHH
Q 042849 690 PFTLVQGPPGTGKTHTVWGML 710 (1019)
Q Consensus 690 ~fsLIQGPPGTGKTkTI~~LL 710 (1019)
.+-+|.|+||+||||+...|.
T Consensus 6 ~~I~l~G~~GsGKST~a~~La 26 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLH 26 (183)
T ss_dssp CEEEEECCC----CHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 467999999999998766554
No 267
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=84.71 E-value=0.55 Score=46.71 Aligned_cols=22 Identities=23% Similarity=0.489 Sum_probs=17.7
Q ss_pred CeeEEeCCCCCChhHHHHHHHH
Q 042849 690 PFTLVQGPPGTGKTHTVWGMLN 711 (1019)
Q Consensus 690 ~fsLIQGPPGTGKTkTI~~LL~ 711 (1019)
.+.+|-||||+||||....|..
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999977665544
No 268
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=84.50 E-value=0.58 Score=47.99 Aligned_cols=22 Identities=18% Similarity=0.268 Sum_probs=17.9
Q ss_pred CeeEEeCCCCCChhHHHHHHHH
Q 042849 690 PFTLVQGPPGTGKTHTVWGMLN 711 (1019)
Q Consensus 690 ~fsLIQGPPGTGKTkTI~~LL~ 711 (1019)
.+-+|-||||+||||.+..|..
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4679999999999987766654
No 269
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=84.44 E-value=0.57 Score=46.20 Aligned_cols=21 Identities=24% Similarity=0.392 Sum_probs=16.4
Q ss_pred eeEEeCCCCCChhHHHHHHHH
Q 042849 691 FTLVQGPPGTGKTHTVWGMLN 711 (1019)
Q Consensus 691 fsLIQGPPGTGKTkTI~~LL~ 711 (1019)
+-+|.||||+||||.+..|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 358999999999976655544
No 270
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=84.41 E-value=1 Score=52.99 Aligned_cols=23 Identities=26% Similarity=0.312 Sum_probs=19.4
Q ss_pred CeeEEeCCCCCChhHHHHHHHHH
Q 042849 690 PFTLVQGPPGTGKTHTVWGMLNV 712 (1019)
Q Consensus 690 ~fsLIQGPPGTGKTkTI~~LL~~ 712 (1019)
.+.+|-|+||+|||||+..|+..
T Consensus 102 ~vI~ivG~~GvGKTTl~~kLA~~ 124 (504)
T 2j37_W 102 NVIMFVGLQGSGKTTTCSKLAYY 124 (504)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 46677799999999999998863
No 271
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=84.19 E-value=0.62 Score=47.78 Aligned_cols=25 Identities=24% Similarity=0.336 Sum_probs=21.0
Q ss_pred CCeeEEeCCCCCChhHHHHHHHHHH
Q 042849 689 WPFTLVQGPPGTGKTHTVWGMLNVI 713 (1019)
Q Consensus 689 ~~fsLIQGPPGTGKTkTI~~LL~~L 713 (1019)
.++.+|.||.|+|||+++-+|..++
T Consensus 23 ~~~~~I~G~NgsGKStil~ai~~~l 47 (203)
T 3qks_A 23 EGINLIIGQNGSGKSSLLDAILVGL 47 (203)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHh
Confidence 3789999999999999887776544
No 272
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=84.19 E-value=0.58 Score=48.35 Aligned_cols=21 Identities=29% Similarity=0.335 Sum_probs=16.7
Q ss_pred eeEEeCCCCCChhHHHHHHHH
Q 042849 691 FTLVQGPPGTGKTHTVWGMLN 711 (1019)
Q Consensus 691 fsLIQGPPGTGKTkTI~~LL~ 711 (1019)
+-+|-||||+||||.+..|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 468999999999987666554
No 273
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=84.18 E-value=0.44 Score=53.20 Aligned_cols=24 Identities=29% Similarity=0.271 Sum_probs=20.0
Q ss_pred CCCeeEEeCCCCCChhHHHHHHHH
Q 042849 688 PWPFTLVQGPPGTGKTHTVWGMLN 711 (1019)
Q Consensus 688 ~~~fsLIQGPPGTGKTkTI~~LL~ 711 (1019)
+..+++|.||||+|||+++..++.
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~ 153 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAV 153 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999988766654
No 274
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=84.13 E-value=0.41 Score=47.46 Aligned_cols=20 Identities=20% Similarity=0.388 Sum_probs=17.5
Q ss_pred CCeeEEeCCCCCChhHHHHH
Q 042849 689 WPFTLVQGPPGTGKTHTVWG 708 (1019)
Q Consensus 689 ~~fsLIQGPPGTGKTkTI~~ 708 (1019)
..+..|-||+|+||||++..
T Consensus 9 gei~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHH
Confidence 46899999999999998765
No 275
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=84.11 E-value=0.58 Score=51.52 Aligned_cols=23 Identities=30% Similarity=0.280 Sum_probs=20.3
Q ss_pred CCeeEEeCCCCCChhHHHHHHHH
Q 042849 689 WPFTLVQGPPGTGKTHTVWGMLN 711 (1019)
Q Consensus 689 ~~fsLIQGPPGTGKTkTI~~LL~ 711 (1019)
..+.+|-||+|+|||||+..|..
T Consensus 104 ~~vi~ivG~~GsGKTTl~~~LA~ 126 (306)
T 1vma_A 104 PFVIMVVGVNGTGKTTSCGKLAK 126 (306)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHHH
Confidence 45889999999999999988875
No 276
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=84.10 E-value=0.61 Score=46.93 Aligned_cols=22 Identities=18% Similarity=0.321 Sum_probs=18.1
Q ss_pred CeeEEeCCCCCChhHHHHHHHH
Q 042849 690 PFTLVQGPPGTGKTHTVWGMLN 711 (1019)
Q Consensus 690 ~fsLIQGPPGTGKTkTI~~LL~ 711 (1019)
.+-+|-||||+||||.+..|..
T Consensus 11 ~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 11 KFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 5789999999999987766654
No 277
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=83.92 E-value=0.65 Score=46.90 Aligned_cols=23 Identities=26% Similarity=0.359 Sum_probs=20.6
Q ss_pred CeeEEeCCCCCChhHHHHHHHHH
Q 042849 690 PFTLVQGPPGTGKTHTVWGMLNV 712 (1019)
Q Consensus 690 ~fsLIQGPPGTGKTkTI~~LL~~ 712 (1019)
++..|-||+|+|||+++..|+..
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHh
Confidence 68899999999999999888864
No 278
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=83.74 E-value=0.54 Score=47.25 Aligned_cols=22 Identities=27% Similarity=0.484 Sum_probs=17.5
Q ss_pred CeeEEeCCCCCChhHHHHHHHH
Q 042849 690 PFTLVQGPPGTGKTHTVWGMLN 711 (1019)
Q Consensus 690 ~fsLIQGPPGTGKTkTI~~LL~ 711 (1019)
.+-+|.||||+|||+....|..
T Consensus 16 ~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3678999999999987666653
No 279
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=83.66 E-value=0.98 Score=49.95 Aligned_cols=24 Identities=33% Similarity=0.416 Sum_probs=20.4
Q ss_pred CCCeeEEeCCCCCChhHHHHHHHH
Q 042849 688 PWPFTLVQGPPGTGKTHTVWGMLN 711 (1019)
Q Consensus 688 ~~~fsLIQGPPGTGKTkTI~~LL~ 711 (1019)
+..+.+|-||+|.|||+|+..|..
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~ 127 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMAN 127 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 345788899999999999988875
No 280
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=83.65 E-value=0.51 Score=50.12 Aligned_cols=22 Identities=23% Similarity=0.443 Sum_probs=18.6
Q ss_pred CeeEEeCCCCCChhHHHHHHHH
Q 042849 690 PFTLVQGPPGTGKTHTVWGMLN 711 (1019)
Q Consensus 690 ~fsLIQGPPGTGKTkTI~~LL~ 711 (1019)
.+.+|-||||+|||+++..|..
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHH
Confidence 5789999999999988777655
No 281
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=83.61 E-value=0.48 Score=48.85 Aligned_cols=22 Identities=23% Similarity=0.401 Sum_probs=17.7
Q ss_pred CeeEEeCCCCCChhHHHHHHHH
Q 042849 690 PFTLVQGPPGTGKTHTVWGMLN 711 (1019)
Q Consensus 690 ~fsLIQGPPGTGKTkTI~~LL~ 711 (1019)
.+-+|-||||+||||.+..|..
T Consensus 8 ~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 8 LRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999987666543
No 282
>3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_B*
Probab=83.52 E-value=1.2 Score=57.34 Aligned_cols=22 Identities=23% Similarity=0.424 Sum_probs=19.1
Q ss_pred CeeEEeCCCCCChhHHHHHHHH
Q 042849 690 PFTLVQGPPGTGKTHTVWGMLN 711 (1019)
Q Consensus 690 ~fsLIQGPPGTGKTkTI~~LL~ 711 (1019)
++.||.|.||||||+|+..-|.
T Consensus 2 ~l~lV~agAGSGKT~~l~~ri~ 23 (1166)
T 3u4q_B 2 GAEFLVGRSGSGKTKLIINSIQ 23 (1166)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEEeCCCCChHHHHHHHHH
Confidence 4689999999999999987654
No 283
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=83.51 E-value=0.61 Score=52.62 Aligned_cols=25 Identities=24% Similarity=0.300 Sum_probs=21.1
Q ss_pred CCCeeEEeCCCCCChhHHHHHHHHH
Q 042849 688 PWPFTLVQGPPGTGKTHTVWGMLNV 712 (1019)
Q Consensus 688 ~~~fsLIQGPPGTGKTkTI~~LL~~ 712 (1019)
+..+.+|.||||+|||++...++..
T Consensus 73 ~G~li~I~G~pGsGKTtlal~la~~ 97 (366)
T 1xp8_A 73 RGRITEIYGPESGGKTTLALAIVAQ 97 (366)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHH
Confidence 3468999999999999998887753
No 284
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=83.48 E-value=0.6 Score=46.07 Aligned_cols=23 Identities=30% Similarity=0.381 Sum_probs=19.6
Q ss_pred CCeeEEeCCCCCChhHHHHHHHH
Q 042849 689 WPFTLVQGPPGTGKTHTVWGMLN 711 (1019)
Q Consensus 689 ~~fsLIQGPPGTGKTkTI~~LL~ 711 (1019)
.++.+|.||-|+|||+++-+|..
T Consensus 26 ~g~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 26 KGFTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp SSEEEEEECTTSSHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999988777665
No 285
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=83.36 E-value=0.72 Score=50.87 Aligned_cols=24 Identities=25% Similarity=0.375 Sum_probs=20.5
Q ss_pred CCCeeEEeCCCCCChhHHHHHHHH
Q 042849 688 PWPFTLVQGPPGTGKTHTVWGMLN 711 (1019)
Q Consensus 688 ~~~fsLIQGPPGTGKTkTI~~LL~ 711 (1019)
+..+..|.||+|+|||+++..|+.
T Consensus 125 ~Ge~vaIvGpsGsGKSTLl~lL~g 148 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSMLCNSLIH 148 (305)
T ss_dssp TCSEEEEECSSSSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhh
Confidence 457899999999999988877765
No 286
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=83.36 E-value=0.68 Score=47.19 Aligned_cols=23 Identities=13% Similarity=0.094 Sum_probs=18.6
Q ss_pred CCeeEEeCCCCCChhHHHHHHHH
Q 042849 689 WPFTLVQGPPGTGKTHTVWGMLN 711 (1019)
Q Consensus 689 ~~fsLIQGPPGTGKTkTI~~LL~ 711 (1019)
..+.+|.||||+|||+++..|..
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEH 47 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 35789999999999987766654
No 287
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=83.18 E-value=0.73 Score=47.01 Aligned_cols=23 Identities=35% Similarity=0.647 Sum_probs=19.2
Q ss_pred CeeEEeCCCCCChhHHHHHHHHH
Q 042849 690 PFTLVQGPPGTGKTHTVWGMLNV 712 (1019)
Q Consensus 690 ~fsLIQGPPGTGKTkTI~~LL~~ 712 (1019)
.+..|-||+|+||||++..|...
T Consensus 2 ~~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 2 RHVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHH
T ss_pred CEEEEECCCCChHHHHHHHHHhh
Confidence 35789999999999998887763
No 288
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=83.17 E-value=0.65 Score=46.45 Aligned_cols=21 Identities=19% Similarity=0.414 Sum_probs=17.1
Q ss_pred CeeEEeCCCCCChhHHHHHHH
Q 042849 690 PFTLVQGPPGTGKTHTVWGML 710 (1019)
Q Consensus 690 ~fsLIQGPPGTGKTkTI~~LL 710 (1019)
.+-+|-||||+||||.+..|.
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~ 25 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIM 25 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHH
Confidence 467899999999997766554
No 289
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=82.87 E-value=0.68 Score=46.30 Aligned_cols=22 Identities=27% Similarity=0.530 Sum_probs=18.3
Q ss_pred CeeEEeCCCCCChhHHHHHHHH
Q 042849 690 PFTLVQGPPGTGKTHTVWGMLN 711 (1019)
Q Consensus 690 ~fsLIQGPPGTGKTkTI~~LL~ 711 (1019)
.+..|-||.|+||||++..|+.
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~ 23 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 3578999999999988877765
No 290
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=82.67 E-value=0.68 Score=47.50 Aligned_cols=21 Identities=24% Similarity=0.335 Sum_probs=16.7
Q ss_pred eeEEeCCCCCChhHHHHHHHH
Q 042849 691 FTLVQGPPGTGKTHTVWGMLN 711 (1019)
Q Consensus 691 fsLIQGPPGTGKTkTI~~LL~ 711 (1019)
+-+|-||||+||||.+..|..
T Consensus 7 ~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 7 NLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 568899999999977665544
No 291
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=82.40 E-value=0.62 Score=47.02 Aligned_cols=19 Identities=26% Similarity=0.247 Sum_probs=15.1
Q ss_pred eeEEeCCCCCChhHHHHHH
Q 042849 691 FTLVQGPPGTGKTHTVWGM 709 (1019)
Q Consensus 691 fsLIQGPPGTGKTkTI~~L 709 (1019)
+..|-||||+||||+...|
T Consensus 4 ~i~l~G~~GsGKST~~~~L 22 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLF 22 (206)
T ss_dssp EEEEECSTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4678999999999765544
No 292
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=82.29 E-value=0.64 Score=47.45 Aligned_cols=20 Identities=20% Similarity=0.351 Sum_probs=15.9
Q ss_pred eEEeCCCCCChhHHHHHHHH
Q 042849 692 TLVQGPPGTGKTHTVWGMLN 711 (1019)
Q Consensus 692 sLIQGPPGTGKTkTI~~LL~ 711 (1019)
-+|-||||+||||.+..|..
T Consensus 3 I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 3 IILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 48899999999977666554
No 293
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=82.20 E-value=0.84 Score=44.47 Aligned_cols=21 Identities=19% Similarity=0.214 Sum_probs=16.6
Q ss_pred CeeEEeCCCCCChhHHHHHHH
Q 042849 690 PFTLVQGPPGTGKTHTVWGML 710 (1019)
Q Consensus 690 ~fsLIQGPPGTGKTkTI~~LL 710 (1019)
.+-+|-|+||+|||++...|.
T Consensus 8 ~~i~l~G~~GsGKSTva~~La 28 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELG 28 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHH
Confidence 567999999999997655543
No 294
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=82.13 E-value=0.81 Score=46.48 Aligned_cols=22 Identities=23% Similarity=0.505 Sum_probs=18.9
Q ss_pred CeeEEeCCCCCChhHHHHHHHH
Q 042849 690 PFTLVQGPPGTGKTHTVWGMLN 711 (1019)
Q Consensus 690 ~fsLIQGPPGTGKTkTI~~LL~ 711 (1019)
.+..|-||+|.||||++..|+.
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 5689999999999998877765
No 295
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=82.05 E-value=0.79 Score=48.18 Aligned_cols=22 Identities=23% Similarity=0.392 Sum_probs=17.5
Q ss_pred CeeEEeCCCCCChhHHHHHHHH
Q 042849 690 PFTLVQGPPGTGKTHTVWGMLN 711 (1019)
Q Consensus 690 ~fsLIQGPPGTGKTkTI~~LL~ 711 (1019)
-+.+|-||||+||||.+..|..
T Consensus 30 ~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 30 GRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3679999999999977666654
No 296
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=82.02 E-value=0.85 Score=44.15 Aligned_cols=20 Identities=15% Similarity=0.006 Sum_probs=15.6
Q ss_pred eEEeCCCCCChhHHHHHHHH
Q 042849 692 TLVQGPPGTGKTHTVWGMLN 711 (1019)
Q Consensus 692 sLIQGPPGTGKTkTI~~LL~ 711 (1019)
-+|.|+||+|||+....|..
T Consensus 3 I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 3 IYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEESCTTSCHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 58999999999976655543
No 297
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=81.77 E-value=0.67 Score=52.94 Aligned_cols=23 Identities=22% Similarity=0.163 Sum_probs=19.5
Q ss_pred CCCeeEEeCCCCCChhHHHHHHH
Q 042849 688 PWPFTLVQGPPGTGKTHTVWGML 710 (1019)
Q Consensus 688 ~~~fsLIQGPPGTGKTkTI~~LL 710 (1019)
+..+++|-||||+|||+++..|+
T Consensus 177 ~Gei~~I~G~sGsGKTTLl~~la 199 (400)
T 3lda_A 177 TGSITELFGEFRTGKSQLCHTLA 199 (400)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHH
T ss_pred CCcEEEEEcCCCCChHHHHHHHH
Confidence 45799999999999998877654
No 298
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=81.76 E-value=1.7 Score=47.53 Aligned_cols=23 Identities=30% Similarity=0.261 Sum_probs=19.3
Q ss_pred CCeeEEeCCCCCChhHHHHHHHH
Q 042849 689 WPFTLVQGPPGTGKTHTVWGMLN 711 (1019)
Q Consensus 689 ~~fsLIQGPPGTGKTkTI~~LL~ 711 (1019)
..+.+|-||+|+|||+|+..|..
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~ 120 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAY 120 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 34677889999999999988875
No 299
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=81.57 E-value=0.86 Score=46.42 Aligned_cols=22 Identities=32% Similarity=0.602 Sum_probs=17.1
Q ss_pred CeeEEeCCCCCChhHHHHHHHH
Q 042849 690 PFTLVQGPPGTGKTHTVWGMLN 711 (1019)
Q Consensus 690 ~fsLIQGPPGTGKTkTI~~LL~ 711 (1019)
.+..|-||||+||||+...|..
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4678999999999976655543
No 300
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=81.50 E-value=0.4 Score=48.37 Aligned_cols=21 Identities=24% Similarity=0.373 Sum_probs=17.5
Q ss_pred eeEEeCCCCCChhHHHHHHHH
Q 042849 691 FTLVQGPPGTGKTHTVWGMLN 711 (1019)
Q Consensus 691 fsLIQGPPGTGKTkTI~~LL~ 711 (1019)
+..|-||||+||||.+..|..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~ 22 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSG 22 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 468999999999988777665
No 301
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=81.45 E-value=0.77 Score=47.95 Aligned_cols=22 Identities=27% Similarity=0.465 Sum_probs=18.9
Q ss_pred CeeEEeCCCCCChhHHHHHHHH
Q 042849 690 PFTLVQGPPGTGKTHTVWGMLN 711 (1019)
Q Consensus 690 ~fsLIQGPPGTGKTkTI~~LL~ 711 (1019)
...||.||+|+|||++...|+.
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~ 56 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQ 56 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4579999999999998888764
No 302
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=81.43 E-value=1.1 Score=52.74 Aligned_cols=38 Identities=24% Similarity=0.157 Sum_probs=28.8
Q ss_pred CChHHHHHHHHHHHHhhcCCCCCCCCCCCCeeEEeCCCCCChhHHHHHHHH
Q 042849 661 FNGPQLAAIQWAAIHTAAGTSSGMTKSPWPFTLVQGPPGTGKTHTVWGMLN 711 (1019)
Q Consensus 661 LNeSQ~eAI~~Al~~~~~g~s~~~~k~~~~fsLIQGPPGTGKTkTI~~LL~ 711 (1019)
++..+.+-+..++. ...+.+|-||+|+|||||+..|+.
T Consensus 245 ~~~~~l~~l~~~v~-------------~g~~i~I~GptGSGKTTlL~aL~~ 282 (511)
T 2oap_1 245 VPSGVLAYLWLAIE-------------HKFSAIVVGETASGKTTTLNAIMM 282 (511)
T ss_dssp SCHHHHHHHHHHHH-------------TTCCEEEEESTTSSHHHHHHHHGG
T ss_pred CCHHHHHHHHHHHh-------------CCCEEEEECCCCCCHHHHHHHHHh
Confidence 67777777765552 224689999999999999988765
No 303
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=80.85 E-value=0.99 Score=44.50 Aligned_cols=22 Identities=23% Similarity=0.291 Sum_probs=17.4
Q ss_pred CeeEEeCCCCCChhHHHHHHHH
Q 042849 690 PFTLVQGPPGTGKTHTVWGMLN 711 (1019)
Q Consensus 690 ~fsLIQGPPGTGKTkTI~~LL~ 711 (1019)
.+..|.||||+||||+...|..
T Consensus 6 ~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 6 CTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5778999999999976655544
No 304
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=80.69 E-value=0.71 Score=47.68 Aligned_cols=23 Identities=26% Similarity=0.358 Sum_probs=15.2
Q ss_pred CCCeeEEeCCCCCChhHHHHHHH
Q 042849 688 PWPFTLVQGPPGTGKTHTVWGML 710 (1019)
Q Consensus 688 ~~~fsLIQGPPGTGKTkTI~~LL 710 (1019)
+..+..|-||+|+||||++..|.
T Consensus 26 ~G~ii~l~Gp~GsGKSTl~~~L~ 48 (231)
T 3lnc_A 26 VGVILVLSSPSGCGKTTVANKLL 48 (231)
T ss_dssp CCCEEEEECSCC----CHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHH
Confidence 34678999999999998877766
No 305
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=80.66 E-value=0.91 Score=52.35 Aligned_cols=24 Identities=33% Similarity=0.411 Sum_probs=20.9
Q ss_pred CeeEEeCCCCCChhHHHHHHHHHH
Q 042849 690 PFTLVQGPPGTGKTHTVWGMLNVI 713 (1019)
Q Consensus 690 ~fsLIQGPPGTGKTkTI~~LL~~L 713 (1019)
.+.+|-||||+|||||+..|...+
T Consensus 100 ~vI~ivG~~GvGKTTla~~La~~l 123 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLARYI 123 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 578899999999999999988643
No 306
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=80.56 E-value=0.81 Score=49.02 Aligned_cols=22 Identities=27% Similarity=0.462 Sum_probs=17.7
Q ss_pred CeeEEeCCCCCChhHHHHHHHH
Q 042849 690 PFTLVQGPPGTGKTHTVWGMLN 711 (1019)
Q Consensus 690 ~fsLIQGPPGTGKTkTI~~LL~ 711 (1019)
.+.+|-||||+||||....|..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3679999999999987766653
No 307
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=80.33 E-value=0.83 Score=46.17 Aligned_cols=22 Identities=18% Similarity=0.119 Sum_probs=17.3
Q ss_pred CCeeEEeCCCCCChhHHHHHHH
Q 042849 689 WPFTLVQGPPGTGKTHTVWGML 710 (1019)
Q Consensus 689 ~~fsLIQGPPGTGKTkTI~~LL 710 (1019)
..+..|.||||+||||+...|.
T Consensus 21 ~~~i~i~G~~GsGKSTl~~~L~ 42 (207)
T 2qt1_A 21 TFIIGISGVTNSGKTTLAKNLQ 42 (207)
T ss_dssp CEEEEEEESTTSSHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 3478899999999997665554
No 308
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=80.06 E-value=0.96 Score=45.68 Aligned_cols=23 Identities=17% Similarity=0.101 Sum_probs=18.6
Q ss_pred CCeeEEeCCCCCChhHHHHHHHH
Q 042849 689 WPFTLVQGPPGTGKTHTVWGMLN 711 (1019)
Q Consensus 689 ~~fsLIQGPPGTGKTkTI~~LL~ 711 (1019)
..+..|-||+|+||||++..|..
T Consensus 6 ~~~i~i~G~~GsGKSTl~~~l~~ 28 (211)
T 3asz_A 6 PFVIGIAGGTASGKTTLAQALAR 28 (211)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHH
Confidence 35788999999999987766654
No 309
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=80.00 E-value=1.4 Score=44.45 Aligned_cols=23 Identities=22% Similarity=0.225 Sum_probs=19.9
Q ss_pred CeeEEeCCCCCChhHHHHHHHHH
Q 042849 690 PFTLVQGPPGTGKTHTVWGMLNV 712 (1019)
Q Consensus 690 ~fsLIQGPPGTGKTkTI~~LL~~ 712 (1019)
+..+|-|+||+|||+++..++..
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIER 53 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 57889999999999998888763
No 310
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=79.64 E-value=2.7 Score=43.57 Aligned_cols=22 Identities=27% Similarity=0.465 Sum_probs=18.4
Q ss_pred CeeEEeCCCCCChhHHHHHHHH
Q 042849 690 PFTLVQGPPGTGKTHTVWGMLN 711 (1019)
Q Consensus 690 ~fsLIQGPPGTGKTkTI~~LL~ 711 (1019)
-|-+|-||||+||||.+..|..
T Consensus 7 ~~i~~eG~~gsGKsT~~~~l~~ 28 (213)
T 4edh_A 7 LFVTLEGPEGAGKSTNRDYLAE 28 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHH
Confidence 5789999999999988766654
No 311
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=79.59 E-value=1.1 Score=46.94 Aligned_cols=22 Identities=27% Similarity=0.481 Sum_probs=17.3
Q ss_pred CeeEEeCCCCCChhHHHHHHHH
Q 042849 690 PFTLVQGPPGTGKTHTVWGMLN 711 (1019)
Q Consensus 690 ~fsLIQGPPGTGKTkTI~~LL~ 711 (1019)
.+-+|-||||.||+|....|..
T Consensus 30 kiI~llGpPGsGKgTqa~~L~~ 51 (217)
T 3umf_A 30 KVIFVLGGPGSGKGTQCEKLVQ 51 (217)
T ss_dssp EEEEEECCTTCCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5778899999999976655554
No 312
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=79.56 E-value=1.2 Score=48.83 Aligned_cols=23 Identities=35% Similarity=0.338 Sum_probs=19.9
Q ss_pred CCeeEEeCCCCCChhHHHHHHHH
Q 042849 689 WPFTLVQGPPGTGKTHTVWGMLN 711 (1019)
Q Consensus 689 ~~fsLIQGPPGTGKTkTI~~LL~ 711 (1019)
..+..|-||.|+|||||+..|..
T Consensus 102 g~vi~lvG~nGsGKTTll~~Lag 124 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAKLGR 124 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHH
Confidence 46888999999999999888765
No 313
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=79.51 E-value=1.1 Score=46.34 Aligned_cols=24 Identities=29% Similarity=0.404 Sum_probs=20.0
Q ss_pred CCCeeEEeCCCCCChhHHHHHHHH
Q 042849 688 PWPFTLVQGPPGTGKTHTVWGMLN 711 (1019)
Q Consensus 688 ~~~fsLIQGPPGTGKTkTI~~LL~ 711 (1019)
+..+..|-||.|.||||++..|..
T Consensus 22 ~G~~~~lvGpsGsGKSTLl~~L~g 45 (218)
T 1z6g_A 22 NIYPLVICGPSGVGKGTLIKKLLN 45 (218)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHh
Confidence 346889999999999988877765
No 314
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=79.28 E-value=1.1 Score=49.66 Aligned_cols=24 Identities=29% Similarity=0.286 Sum_probs=20.8
Q ss_pred CCCeeEEeCCCCCChhHHHHHHHH
Q 042849 688 PWPFTLVQGPPGTGKTHTVWGMLN 711 (1019)
Q Consensus 688 ~~~fsLIQGPPGTGKTkTI~~LL~ 711 (1019)
+..+..|-||+|+|||||+..|..
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag 151 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLAN 151 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999888875
No 315
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=79.28 E-value=1.1 Score=45.51 Aligned_cols=23 Identities=17% Similarity=0.108 Sum_probs=19.3
Q ss_pred CCeeEEeCCCCCChhHHHHHHHH
Q 042849 689 WPFTLVQGPPGTGKTHTVWGMLN 711 (1019)
Q Consensus 689 ~~fsLIQGPPGTGKTkTI~~LL~ 711 (1019)
..+..|-||+|+|||+++..|..
T Consensus 22 ~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 22 RLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp SEEEEEEECTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35889999999999988776665
No 316
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=79.24 E-value=1.1 Score=46.80 Aligned_cols=22 Identities=32% Similarity=0.644 Sum_probs=18.4
Q ss_pred CeeEEeCCCCCChhHHHHHHHH
Q 042849 690 PFTLVQGPPGTGKTHTVWGMLN 711 (1019)
Q Consensus 690 ~fsLIQGPPGTGKTkTI~~LL~ 711 (1019)
.|.+|-||||+||||.+..|..
T Consensus 27 ~~i~i~G~~GsGKsT~~~~l~~ 48 (229)
T 4eaq_A 27 AFITFEGPEGSGKTTVINEVYH 48 (229)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHH
Confidence 5789999999999987766654
No 317
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=79.05 E-value=0.98 Score=45.37 Aligned_cols=20 Identities=20% Similarity=0.120 Sum_probs=15.7
Q ss_pred eeEEeCCCCCChhHHHHHHH
Q 042849 691 FTLVQGPPGTGKTHTVWGML 710 (1019)
Q Consensus 691 fsLIQGPPGTGKTkTI~~LL 710 (1019)
+..|.||||+||||+...|.
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~ 22 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFR 22 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHH
Confidence 46899999999997665544
No 318
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=78.98 E-value=1.2 Score=46.05 Aligned_cols=24 Identities=21% Similarity=0.382 Sum_probs=19.8
Q ss_pred CCCeeEEeCCCCCChhHHHHHHHH
Q 042849 688 PWPFTLVQGPPGTGKTHTVWGMLN 711 (1019)
Q Consensus 688 ~~~fsLIQGPPGTGKTkTI~~LL~ 711 (1019)
...+..|-||+|+|||+++..|+.
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~ 41 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLS 41 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEEECcCCCCHHHHHHHHHh
Confidence 346789999999999998777764
No 319
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=78.78 E-value=0.99 Score=60.98 Aligned_cols=25 Identities=20% Similarity=0.283 Sum_probs=21.2
Q ss_pred CCCeeEEeCCCCCChhHHHHHHHHH
Q 042849 688 PWPFTLVQGPPGTGKTHTVWGMLNV 712 (1019)
Q Consensus 688 ~~~fsLIQGPPGTGKTkTI~~LL~~ 712 (1019)
+....||.||||||||++..+++..
T Consensus 1426 ~g~~vll~GppGtGKT~LA~ala~e 1450 (2050)
T 3cmu_A 1426 MGRIVEIYGPESSGKTTLTLQVIAA 1450 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3468999999999999999888653
No 320
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=78.60 E-value=1.2 Score=48.84 Aligned_cols=24 Identities=21% Similarity=0.293 Sum_probs=20.7
Q ss_pred CCCeeEEeCCCCCChhHHHHHHHH
Q 042849 688 PWPFTLVQGPPGTGKTHTVWGMLN 711 (1019)
Q Consensus 688 ~~~fsLIQGPPGTGKTkTI~~LL~ 711 (1019)
...+..|-||.|+|||||+..|..
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag 122 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAH 122 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 346899999999999999988775
No 321
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=78.58 E-value=1.3 Score=45.14 Aligned_cols=24 Identities=21% Similarity=0.343 Sum_probs=20.3
Q ss_pred CCCeeEEeCCCCCChhHHHHHHHH
Q 042849 688 PWPFTLVQGPPGTGKTHTVWGMLN 711 (1019)
Q Consensus 688 ~~~fsLIQGPPGTGKTkTI~~LL~ 711 (1019)
...+..|-||.|.||||++..|..
T Consensus 19 ~Gei~~l~GpnGsGKSTLl~~l~g 42 (207)
T 1znw_A 19 VGRVVVLSGPSAVGKSTVVRCLRE 42 (207)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHh
Confidence 346899999999999998877765
No 322
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=77.83 E-value=0.94 Score=62.95 Aligned_cols=20 Identities=40% Similarity=0.732 Sum_probs=17.2
Q ss_pred eEEeCCCCCChhHHHHHHHH
Q 042849 692 TLVQGPPGTGKTHTVWGMLN 711 (1019)
Q Consensus 692 sLIQGPPGTGKTkTI~~LL~ 711 (1019)
.|+.||||||||.++..++.
T Consensus 1270 vLL~GPpGtGKT~la~~~l~ 1289 (2695)
T 4akg_A 1270 IILCGPPGSGKTMIMNNALR 1289 (2695)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 59999999999998866654
No 323
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=77.61 E-value=2 Score=44.48 Aligned_cols=23 Identities=26% Similarity=0.303 Sum_probs=19.4
Q ss_pred CCeeEEeCCCCCChhHHHHHHHH
Q 042849 689 WPFTLVQGPPGTGKTHTVWGMLN 711 (1019)
Q Consensus 689 ~~fsLIQGPPGTGKTkTI~~LL~ 711 (1019)
..+..|-||.|+||||++..|..
T Consensus 22 Ge~~~liG~nGsGKSTLl~~l~G 44 (208)
T 3b85_A 22 NTIVFGLGPAGSGKTYLAMAKAV 44 (208)
T ss_dssp CSEEEEECCTTSSTTHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 36899999999999988777665
No 324
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=77.53 E-value=1.9 Score=44.79 Aligned_cols=25 Identities=20% Similarity=0.180 Sum_probs=21.7
Q ss_pred CCCeeEEeCCCCCChhHHHHHHHHH
Q 042849 688 PWPFTLVQGPPGTGKTHTVWGMLNV 712 (1019)
Q Consensus 688 ~~~fsLIQGPPGTGKTkTI~~LL~~ 712 (1019)
...+.+|-|+||+|||+++..|...
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La~~ 37 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFGRY 37 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHH
Confidence 3478999999999999999998764
No 325
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=77.48 E-value=1.2 Score=52.16 Aligned_cols=24 Identities=33% Similarity=0.386 Sum_probs=20.6
Q ss_pred CCCeeEEeCCCCCChhHHHHHHHH
Q 042849 688 PWPFTLVQGPPGTGKTHTVWGMLN 711 (1019)
Q Consensus 688 ~~~fsLIQGPPGTGKTkTI~~LL~ 711 (1019)
+..+.+|-||||+|||+++..++.
T Consensus 280 ~G~i~~i~G~~GsGKSTLl~~l~g 303 (525)
T 1tf7_A 280 KDSIILATGATGTGKTLLVSRFVE 303 (525)
T ss_dssp SSCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHH
Confidence 457899999999999998877765
No 326
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=77.31 E-value=1.4 Score=45.60 Aligned_cols=20 Identities=30% Similarity=0.574 Sum_probs=15.5
Q ss_pred eEEeCCCCCChhHHHHHHHH
Q 042849 692 TLVQGPPGTGKTHTVWGMLN 711 (1019)
Q Consensus 692 sLIQGPPGTGKTkTI~~LL~ 711 (1019)
-+|-||||.||+|....|..
T Consensus 3 Iil~GpPGsGKgTqa~~La~ 22 (206)
T 3sr0_A 3 LVFLGPPGAGKGTQAKRLAK 22 (206)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 47889999999976655554
No 327
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=76.93 E-value=1.6 Score=43.55 Aligned_cols=21 Identities=19% Similarity=0.461 Sum_probs=16.8
Q ss_pred eeEEeCCCCCChhHHHHHHHH
Q 042849 691 FTLVQGPPGTGKTHTVWGMLN 711 (1019)
Q Consensus 691 fsLIQGPPGTGKTkTI~~LL~ 711 (1019)
+..|-||||+|||++...|..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 678999999999976655543
No 328
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=76.73 E-value=1.3 Score=43.78 Aligned_cols=24 Identities=33% Similarity=0.457 Sum_probs=20.6
Q ss_pred CCCeeEEeCCCCCChhHHHHHHHH
Q 042849 688 PWPFTLVQGPPGTGKTHTVWGMLN 711 (1019)
Q Consensus 688 ~~~fsLIQGPPGTGKTkTI~~LL~ 711 (1019)
+..+..|.||-|.|||+++..|..
T Consensus 32 ~Ge~v~L~G~nGaGKTTLlr~l~g 55 (158)
T 1htw_A 32 KAIMVYLNGDLGAGKTTLTRGMLQ 55 (158)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999998888776
No 329
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=76.31 E-value=1.5 Score=48.64 Aligned_cols=25 Identities=24% Similarity=0.274 Sum_probs=21.3
Q ss_pred CCCeeEEeCCCCCChhHHHHHHHHH
Q 042849 688 PWPFTLVQGPPGTGKTHTVWGMLNV 712 (1019)
Q Consensus 688 ~~~fsLIQGPPGTGKTkTI~~LL~~ 712 (1019)
...+..|-||||.|||+++..|+..
T Consensus 54 ~g~~v~i~G~~GaGKSTLl~~l~g~ 78 (337)
T 2qm8_A 54 RAIRVGITGVPGVGKSTTIDALGSL 78 (337)
T ss_dssp CSEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHh
Confidence 3468999999999999999888763
No 330
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=76.24 E-value=2.1 Score=43.43 Aligned_cols=23 Identities=22% Similarity=0.199 Sum_probs=18.9
Q ss_pred CeeEEeCCCCCChhHHHHHHHHH
Q 042849 690 PFTLVQGPPGTGKTHTVWGMLNV 712 (1019)
Q Consensus 690 ~fsLIQGPPGTGKTkTI~~LL~~ 712 (1019)
...+|-|+||+|||+++..++..
T Consensus 39 ~~i~ivG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 39 VAFDFMGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 45677799999999999888763
No 331
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=76.19 E-value=1.6 Score=45.50 Aligned_cols=24 Identities=25% Similarity=0.506 Sum_probs=20.4
Q ss_pred CCCeeEEeCCCCCChhHHHHHHHH
Q 042849 688 PWPFTLVQGPPGTGKTHTVWGMLN 711 (1019)
Q Consensus 688 ~~~fsLIQGPPGTGKTkTI~~LL~ 711 (1019)
...+..|-||.|+||||++..|..
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~g 38 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALLK 38 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHhc
Confidence 457899999999999988777665
No 332
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=75.76 E-value=1.4 Score=49.72 Aligned_cols=23 Identities=26% Similarity=0.573 Sum_probs=18.5
Q ss_pred eeEEeCCCCCChhHHHHHHHHHH
Q 042849 691 FTLVQGPPGTGKTHTVWGMLNVI 713 (1019)
Q Consensus 691 fsLIQGPPGTGKTkTI~~LL~~L 713 (1019)
..+|.||||+|||++...|...+
T Consensus 26 ~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 26 CVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHh
Confidence 37899999999998887666543
No 333
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=75.73 E-value=1.6 Score=48.57 Aligned_cols=24 Identities=21% Similarity=0.297 Sum_probs=20.8
Q ss_pred CeeEEeCCCCCChhHHHHHHHHHH
Q 042849 690 PFTLVQGPPGTGKTHTVWGMLNVI 713 (1019)
Q Consensus 690 ~fsLIQGPPGTGKTkTI~~LL~~L 713 (1019)
.+..|-|+||+|||+++..|+..+
T Consensus 80 ~~I~i~G~~G~GKSTl~~~L~~~l 103 (355)
T 3p32_A 80 HRVGITGVPGVGKSTAIEALGMHL 103 (355)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 578999999999999999887643
No 334
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=75.38 E-value=1.7 Score=48.04 Aligned_cols=25 Identities=24% Similarity=0.336 Sum_probs=20.9
Q ss_pred CCeeEEeCCCCCChhHHHHHHHHHH
Q 042849 689 WPFTLVQGPPGTGKTHTVWGMLNVI 713 (1019)
Q Consensus 689 ~~fsLIQGPPGTGKTkTI~~LL~~L 713 (1019)
.++.+|.||.|.|||+++-+|..++
T Consensus 23 ~~~~~i~G~NGsGKS~lleAi~~~l 47 (339)
T 3qkt_A 23 EGINLIIGQNGSGKSSLLDAILVGL 47 (339)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHh
Confidence 4799999999999999887776543
No 335
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=75.31 E-value=1.7 Score=44.48 Aligned_cols=20 Identities=30% Similarity=0.660 Sum_probs=17.1
Q ss_pred eEEeCCCCCChhHHHHHHHH
Q 042849 692 TLVQGPPGTGKTHTVWGMLN 711 (1019)
Q Consensus 692 sLIQGPPGTGKTkTI~~LL~ 711 (1019)
-+|-||+|+|||+++..|+.
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~ 23 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 48999999999998877764
No 336
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=75.27 E-value=6 Score=47.11 Aligned_cols=67 Identities=16% Similarity=0.098 Sum_probs=48.3
Q ss_pred CCChHHHHHHHHHHHHhhcCCCCCCCCCCCCeeEEeCCCCCChhHHHHHHHHHHHHHhhhhhhhhhhhhcCcccccCCCC
Q 042849 660 TFNGPQLAAIQWAAIHTAAGTSSGMTKSPWPFTLVQGPPGTGKTHTVWGMLNVIHLVQYQHYYNSLLKKLAPESYKQPNE 739 (1019)
Q Consensus 660 ~LNeSQ~eAI~~Al~~~~~g~s~~~~k~~~~fsLIQGPPGTGKTkTI~~LL~~Lll~~~q~~~~sLlk~l~~~~~kq~~~ 739 (1019)
.|++.|...+.. +. ...+.+|.+|.|.|||++++.++... + +.
T Consensus 163 ~l~p~Q~~i~~~-l~-------------~~r~~~i~~~Rq~GKS~~~a~~~l~~-~---------~~------------- 205 (592)
T 3cpe_A 163 QLRDYQRDMLKI-MS-------------SKRMTVCNLSRQLGKTTVVAIFLAHF-V---------CF------------- 205 (592)
T ss_dssp CCCHHHHHHHHH-HH-------------HCSEEEEEECSSSCHHHHHHHHHHHH-H---------HT-------------
T ss_pred cCCHHHHHHHHh-hc-------------cccEEEEEEcCccChHHHHHHHHHHH-H---------Hh-------------
Confidence 688999887763 21 12579999999999999887655311 1 00
Q ss_pred CCCCcccCCchhHHhhhhhhhhhccCCCCCCCCcEEEEecCchhHHHHHHHHH
Q 042849 740 SNSDNVSMGSIDEVLQNMDQNLLRTLPKLCPKPRMLVCAPSNAATDELLTRVL 792 (1019)
Q Consensus 740 ~~s~~~~~g~~~e~~~~~~~n~~r~~~k~~~k~RILVCAPSNaAVDEll~RLl 792 (1019)
.++.+|+++|+|-....++..++.
T Consensus 206 -----------------------------~~~~~i~~va~t~~qA~~~~~~i~ 229 (592)
T 3cpe_A 206 -----------------------------NKDKAVGILAHKGSMSAEVLDRTK 229 (592)
T ss_dssp -----------------------------SSSCEEEEEESSHHHHHHHHHHHH
T ss_pred -----------------------------CCCCeEEEEECCHHHHHHHHHHHH
Confidence 135689999999998888887763
No 337
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=75.09 E-value=2.7 Score=44.19 Aligned_cols=23 Identities=26% Similarity=0.319 Sum_probs=16.1
Q ss_pred CCeeEEeCCCCCChhHHHHHHHH
Q 042849 689 WPFTLVQGPPGTGKTHTVWGMLN 711 (1019)
Q Consensus 689 ~~fsLIQGPPGTGKTkTI~~LL~ 711 (1019)
.-|-+|-||||+||||.+..|..
T Consensus 25 g~~I~~eG~~GsGKsT~~~~l~~ 47 (227)
T 3v9p_A 25 GKFITFEGIDGAGKTTHLQWFCD 47 (227)
T ss_dssp CCEEEEECCC---CHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35889999999999988777665
No 338
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=74.82 E-value=1.8 Score=47.64 Aligned_cols=24 Identities=21% Similarity=0.057 Sum_probs=19.6
Q ss_pred CCCeeEEeCCCCCChhHHHHHHHH
Q 042849 688 PWPFTLVQGPPGTGKTHTVWGMLN 711 (1019)
Q Consensus 688 ~~~fsLIQGPPGTGKTkTI~~LL~ 711 (1019)
...+..|-||+|+||||++..|..
T Consensus 89 ~g~ivgI~G~sGsGKSTL~~~L~g 112 (312)
T 3aez_A 89 VPFIIGVAGSVAVGKSTTARVLQA 112 (312)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCchHHHHHHHHHh
Confidence 346889999999999988776655
No 339
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=74.77 E-value=1.5 Score=48.68 Aligned_cols=22 Identities=27% Similarity=0.572 Sum_probs=18.4
Q ss_pred CeeEEeCCCCCChhHHHHHHHH
Q 042849 690 PFTLVQGPPGTGKTHTVWGMLN 711 (1019)
Q Consensus 690 ~fsLIQGPPGTGKTkTI~~LL~ 711 (1019)
.+.+|.||||+|||++...|..
T Consensus 6 ~~i~i~GptGsGKTtla~~La~ 27 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALAD 27 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999988777654
No 340
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=74.59 E-value=1.9 Score=48.23 Aligned_cols=24 Identities=25% Similarity=0.192 Sum_probs=20.3
Q ss_pred CCeeEEeCCCCCChhHHHHHHHHH
Q 042849 689 WPFTLVQGPPGTGKTHTVWGMLNV 712 (1019)
Q Consensus 689 ~~fsLIQGPPGTGKTkTI~~LL~~ 712 (1019)
.+..+|-||+|+|||+++..++..
T Consensus 35 ~~~~~i~G~~G~GKs~~~~~~~~~ 58 (392)
T 4ag6_A 35 NSNWTILAKPGAGKSFTAKMLLLR 58 (392)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHH
T ss_pred cCceEEEcCCCCCHHHHHHHHHHH
Confidence 356899999999999998888753
No 341
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=74.42 E-value=1.7 Score=48.86 Aligned_cols=24 Identities=21% Similarity=0.293 Sum_probs=20.7
Q ss_pred CCCeeEEeCCCCCChhHHHHHHHH
Q 042849 688 PWPFTLVQGPPGTGKTHTVWGMLN 711 (1019)
Q Consensus 688 ~~~fsLIQGPPGTGKTkTI~~LL~ 711 (1019)
+..+.+|-||.|.|||||+..|..
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag 179 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAH 179 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHh
Confidence 346899999999999999988775
No 342
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=74.17 E-value=1.9 Score=45.69 Aligned_cols=22 Identities=36% Similarity=0.629 Sum_probs=17.4
Q ss_pred CeeEEeCCCCCChhHHHHHHHH
Q 042849 690 PFTLVQGPPGTGKTHTVWGMLN 711 (1019)
Q Consensus 690 ~fsLIQGPPGTGKTkTI~~LL~ 711 (1019)
-+..|-||||+|||++...|..
T Consensus 10 ~~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999976665543
No 343
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=73.99 E-value=2.1 Score=43.08 Aligned_cols=22 Identities=27% Similarity=0.493 Sum_probs=18.5
Q ss_pred CeeEEeCCCCCChhHHHHHHHH
Q 042849 690 PFTLVQGPPGTGKTHTVWGMLN 711 (1019)
Q Consensus 690 ~fsLIQGPPGTGKTkTI~~LL~ 711 (1019)
.-.+|-||||+|||+++..++.
T Consensus 13 ~~i~~~G~~g~GKTsl~~~l~~ 34 (218)
T 1nrj_B 13 PSIIIAGPQNSGKTSLLTLLTT 34 (218)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4578999999999998877764
No 344
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=73.93 E-value=1.5 Score=45.96 Aligned_cols=21 Identities=19% Similarity=0.233 Sum_probs=16.4
Q ss_pred CeeEEeCCCCCChhHHHHHHH
Q 042849 690 PFTLVQGPPGTGKTHTVWGML 710 (1019)
Q Consensus 690 ~fsLIQGPPGTGKTkTI~~LL 710 (1019)
-+..|.||||+|||++...|.
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~ 43 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIV 43 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHH
Confidence 367899999999997665444
No 345
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=73.88 E-value=1.5 Score=51.36 Aligned_cols=22 Identities=41% Similarity=0.335 Sum_probs=19.3
Q ss_pred CCCeeEEeCCCCCChhHHHHHH
Q 042849 688 PWPFTLVQGPPGTGKTHTVWGM 709 (1019)
Q Consensus 688 ~~~fsLIQGPPGTGKTkTI~~L 709 (1019)
...+.+|-||||+|||+++..+
T Consensus 38 ~Ge~~~l~G~nGsGKSTL~~~~ 59 (525)
T 1tf7_A 38 IGRSTLVSGTSGTGKTLFSIQF 59 (525)
T ss_dssp TTSEEEEEESTTSSHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHH
Confidence 3578999999999999998875
No 346
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=73.66 E-value=1.6 Score=44.37 Aligned_cols=20 Identities=20% Similarity=0.312 Sum_probs=15.9
Q ss_pred CeeEEeCCCCCChhHHHHHH
Q 042849 690 PFTLVQGPPGTGKTHTVWGM 709 (1019)
Q Consensus 690 ~fsLIQGPPGTGKTkTI~~L 709 (1019)
-+..|-||||+||||+...|
T Consensus 5 ~~I~i~G~~GSGKST~~~~L 24 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVANAF 24 (218)
T ss_dssp EEEEEECCTTSCHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 46789999999999755444
No 347
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=73.46 E-value=2.1 Score=46.60 Aligned_cols=23 Identities=35% Similarity=0.576 Sum_probs=18.9
Q ss_pred CCeeEEeCCCCCChhHHHHHHHH
Q 042849 689 WPFTLVQGPPGTGKTHTVWGMLN 711 (1019)
Q Consensus 689 ~~fsLIQGPPGTGKTkTI~~LL~ 711 (1019)
..+..|.||+|+||||++..|..
T Consensus 31 ~~ii~I~G~sGsGKSTla~~L~~ 53 (290)
T 1odf_A 31 PLFIFFSGPQGSGKSFTSIQIYN 53 (290)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35789999999999988766655
No 348
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=73.23 E-value=1.8 Score=40.76 Aligned_cols=20 Identities=25% Similarity=0.501 Sum_probs=17.2
Q ss_pred eEEeCCCCCChhHHHHHHHH
Q 042849 692 TLVQGPPGTGKTHTVWGMLN 711 (1019)
Q Consensus 692 sLIQGPPGTGKTkTI~~LL~ 711 (1019)
.+|-|+||+|||+++..++.
T Consensus 4 i~v~G~~~~GKSsli~~l~~ 23 (161)
T 2dyk_A 4 VVIVGRPNVGKSSLFNRLLK 23 (161)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhC
Confidence 58899999999998877764
No 349
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=73.07 E-value=1.7 Score=51.12 Aligned_cols=40 Identities=18% Similarity=0.137 Sum_probs=27.1
Q ss_pred hHHHHHHHHHHHHhhcCCCCCCCCCCCCeeEEeCCCCCChhHHHHHHHH
Q 042849 663 GPQLAAIQWAAIHTAAGTSSGMTKSPWPFTLVQGPPGTGKTHTVWGMLN 711 (1019)
Q Consensus 663 eSQ~eAI~~Al~~~~~g~s~~~~k~~~~fsLIQGPPGTGKTkTI~~LL~ 711 (1019)
+...+.|..++... . ...++.+|+||+|.|||+++..+..
T Consensus 130 ~~~l~~L~~~L~~~----~-----~~~~~v~I~G~~GiGKTtLa~~~~~ 169 (591)
T 1z6t_A 130 KKLVNAIQQKLSKL----K-----GEPGWVTIHGMAGCGKSVLAAEAVR 169 (591)
T ss_dssp HHHHHHHHHHHTTS----T-----TSCEEEEEECCTTSSHHHHHHHHHC
T ss_pred HHHHHHHHHHHhcc----c-----CCCceEEEEcCCCCCHHHHHHHHHh
Confidence 45566676665210 0 1236899999999999998877653
No 350
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=73.01 E-value=1.7 Score=43.22 Aligned_cols=20 Identities=20% Similarity=0.228 Sum_probs=15.8
Q ss_pred CeeEEeCCCCCChhHHHHHH
Q 042849 690 PFTLVQGPPGTGKTHTVWGM 709 (1019)
Q Consensus 690 ~fsLIQGPPGTGKTkTI~~L 709 (1019)
.+..|-||||+|||++...|
T Consensus 9 ~~I~i~G~~GsGKST~~~~L 28 (203)
T 1uf9_A 9 IIIGITGNIGSGKSTVAALL 28 (203)
T ss_dssp EEEEEEECTTSCHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 46789999999999765444
No 351
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=72.95 E-value=2.4 Score=41.24 Aligned_cols=20 Identities=25% Similarity=0.433 Sum_probs=17.4
Q ss_pred eEEeCCCCCChhHHHHHHHH
Q 042849 692 TLVQGPPGTGKTHTVWGMLN 711 (1019)
Q Consensus 692 sLIQGPPGTGKTkTI~~LL~ 711 (1019)
.+|-|+||.|||+++..++.
T Consensus 10 i~v~G~~~~GKSsli~~l~~ 29 (208)
T 3clv_A 10 TVLLGESSVGKSSIVLRLTK 29 (208)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 68899999999998877765
No 352
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=72.92 E-value=1.8 Score=49.28 Aligned_cols=22 Identities=27% Similarity=0.360 Sum_probs=18.0
Q ss_pred CCeeEEeCCCCCChhHHHHHHH
Q 042849 689 WPFTLVQGPPGTGKTHTVWGML 710 (1019)
Q Consensus 689 ~~fsLIQGPPGTGKTkTI~~LL 710 (1019)
..+.+|.||||+||||+...|.
T Consensus 258 ~~lIil~G~pGSGKSTla~~L~ 279 (416)
T 3zvl_A 258 PEVVVAVGFPGAGKSTFIQEHL 279 (416)
T ss_dssp CCEEEEESCTTSSHHHHHHHHT
T ss_pred CEEEEEECCCCCCHHHHHHHHH
Confidence 3678999999999998766654
No 353
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=72.83 E-value=7.1 Score=47.25 Aligned_cols=68 Identities=25% Similarity=0.289 Sum_probs=49.3
Q ss_pred CCChHHHHHHHHHHHHhhcCCCCCCCCCCCCeeEEeCCCCCChhHHHHHHHHHHHHHhhhhhhhhhhhhcCcccccCCCC
Q 042849 660 TFNGPQLAAIQWAAIHTAAGTSSGMTKSPWPFTLVQGPPGTGKTHTVWGMLNVIHLVQYQHYYNSLLKKLAPESYKQPNE 739 (1019)
Q Consensus 660 ~LNeSQ~eAI~~Al~~~~~g~s~~~~k~~~~fsLIQGPPGTGKTkTI~~LL~~Lll~~~q~~~~sLlk~l~~~~~kq~~~ 739 (1019)
..|.-|..||...+.....| ....++.|-+|+|||.|++.++..+
T Consensus 12 ~p~~~Q~~~i~~l~~~~~~~---------~~~~~l~g~~gs~k~~~~a~~~~~~-------------------------- 56 (661)
T 2d7d_A 12 QPQGDQPKAIEKLVKGIQEG---------KKHQTLLGATGTGKTFTVSNLIKEV-------------------------- 56 (661)
T ss_dssp CCCTTHHHHHHHHHHHHHTT---------CSEEEEEECTTSCHHHHHHHHHHHH--------------------------
T ss_pred CCCCCCHHHHHHHHHHHhcC---------CCcEEEECcCCcHHHHHHHHHHHHh--------------------------
Confidence 55778988887644221111 1235788999999999998876421
Q ss_pred CCCCcccCCchhHHhhhhhhhhhccCCCCCCCCcEEEEecCchhHHHHHHHHHh
Q 042849 740 SNSDNVSMGSIDEVLQNMDQNLLRTLPKLCPKPRMLVCAPSNAATDELLTRVLD 793 (1019)
Q Consensus 740 ~~s~~~~~g~~~e~~~~~~~n~~r~~~k~~~k~RILVCAPSNaAVDEll~RLl~ 793 (1019)
++++||.+|+..-..++...|..
T Consensus 57 -------------------------------~~~~lvv~~~~~~A~~l~~el~~ 79 (661)
T 2d7d_A 57 -------------------------------NKPTLVIAHNKTLAGQLYSEFKE 79 (661)
T ss_dssp -------------------------------CCCEEEECSSHHHHHHHHHHHHH
T ss_pred -------------------------------CCCEEEEECCHHHHHHHHHHHHH
Confidence 34699999999999999999853
No 354
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=72.73 E-value=1.7 Score=44.45 Aligned_cols=21 Identities=19% Similarity=0.400 Sum_probs=18.4
Q ss_pred eeEEeCCCCCChhHHHHHHHH
Q 042849 691 FTLVQGPPGTGKTHTVWGMLN 711 (1019)
Q Consensus 691 fsLIQGPPGTGKTkTI~~LL~ 711 (1019)
=.||.||+|+|||++...++.
T Consensus 18 gvli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 18 GVLITGEANIGKSELSLALID 38 (181)
T ss_dssp EEEEEESSSSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 369999999999999888875
No 355
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=72.60 E-value=1.8 Score=57.74 Aligned_cols=23 Identities=22% Similarity=0.341 Sum_probs=19.3
Q ss_pred CCeeEEeCCCCCChhHHHHHHHH
Q 042849 689 WPFTLVQGPPGTGKTHTVWGMLN 711 (1019)
Q Consensus 689 ~~fsLIQGPPGTGKTkTI~~LL~ 711 (1019)
..++||.||||||||....+++.
T Consensus 1082 g~~~l~~G~~g~GKT~la~~~~~ 1104 (1706)
T 3cmw_A 1082 GRIVEIYGPESSGKTTLTLQVIA 1104 (1706)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEEcCCCCChHHHHHHHHH
Confidence 34699999999999988877764
No 356
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=72.57 E-value=2.2 Score=44.51 Aligned_cols=22 Identities=18% Similarity=0.240 Sum_probs=18.1
Q ss_pred CeeEEeCCCCCChhHHHHHHHH
Q 042849 690 PFTLVQGPPGTGKTHTVWGMLN 711 (1019)
Q Consensus 690 ~fsLIQGPPGTGKTkTI~~LL~ 711 (1019)
.+.-|-||.|+||||++..|..
T Consensus 26 ~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 26 FLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4788999999999988766654
No 357
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=72.40 E-value=1.9 Score=40.51 Aligned_cols=20 Identities=25% Similarity=0.420 Sum_probs=16.9
Q ss_pred eEEeCCCCCChhHHHHHHHH
Q 042849 692 TLVQGPPGTGKTHTVWGMLN 711 (1019)
Q Consensus 692 sLIQGPPGTGKTkTI~~LL~ 711 (1019)
.+|-|+||+|||+++..++.
T Consensus 6 i~v~G~~~~GKSsli~~l~~ 25 (167)
T 1kao_A 6 VVVLGSGGVGKSALTVQFVT 25 (167)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHc
Confidence 58999999999998777654
No 358
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=72.32 E-value=2.1 Score=50.32 Aligned_cols=24 Identities=29% Similarity=0.279 Sum_probs=20.5
Q ss_pred CCCeeEEeCCCCCChhHHHHHHHH
Q 042849 688 PWPFTLVQGPPGTGKTHTVWGMLN 711 (1019)
Q Consensus 688 ~~~fsLIQGPPGTGKTkTI~~LL~ 711 (1019)
...+.+|-||.|+|||||+..|..
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAg 315 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLAR 315 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCcccHHHHHHHHHH
Confidence 345889999999999999888765
No 359
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=71.99 E-value=2.2 Score=47.44 Aligned_cols=24 Identities=25% Similarity=0.268 Sum_probs=20.9
Q ss_pred CCeeEEeCCCCCChhHHHHHHHHH
Q 042849 689 WPFTLVQGPPGTGKTHTVWGMLNV 712 (1019)
Q Consensus 689 ~~fsLIQGPPGTGKTkTI~~LL~~ 712 (1019)
..+..|-||||.|||+++-.|+..
T Consensus 74 ~~~v~lvG~pgaGKSTLln~L~~~ 97 (349)
T 2www_A 74 AFRVGLSGPPGAGKSTFIEYFGKM 97 (349)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHH
Confidence 467899999999999999888863
No 360
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=71.79 E-value=11 Score=47.02 Aligned_cols=36 Identities=17% Similarity=0.253 Sum_probs=25.6
Q ss_pred cCcEEEEecccchhHHHhhh---------cCCCCEEEEcCCCCCC
Q 042849 945 EAEIVFTTVSSSGRKLFSRL---------THGFDMVVIDEAAQAS 980 (1019)
Q Consensus 945 eA~IV~sTlSssg~~ll~~l---------~~~FDvVIIDEAAQa~ 980 (1019)
.++||++|..-.+-+++... -..+.++|||||-...
T Consensus 163 ~~dIvvgTpgrl~fDyLrd~~~~~~~~~~~~~l~~lVlDEaD~mL 207 (853)
T 2fsf_A 163 AADITYGTNNEYGFDYLRDNMAFSPEERVQRKLHYALVDEVDSIL 207 (853)
T ss_dssp HSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCSCCEEEESCHHHHT
T ss_pred CCCEEEECCchhhHHHHHhhhhccHhHhcccCCcEEEECchHHHH
Confidence 47999999976653333321 1468999999998765
No 361
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=71.49 E-value=2.5 Score=45.07 Aligned_cols=22 Identities=27% Similarity=0.154 Sum_probs=17.8
Q ss_pred CeeEEeCCCCCChhHHHHHHHH
Q 042849 690 PFTLVQGPPGTGKTHTVWGMLN 711 (1019)
Q Consensus 690 ~fsLIQGPPGTGKTkTI~~LL~ 711 (1019)
.+..|-||||+|||++...|..
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999977665544
No 362
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=71.09 E-value=2.3 Score=46.33 Aligned_cols=23 Identities=17% Similarity=0.124 Sum_probs=18.9
Q ss_pred CCeeEEeCCCCCChhHHHHHHHH
Q 042849 689 WPFTLVQGPPGTGKTHTVWGMLN 711 (1019)
Q Consensus 689 ~~fsLIQGPPGTGKTkTI~~LL~ 711 (1019)
..+.-|-||+|+||||++..|..
T Consensus 80 g~iigI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 80 PYIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 35888999999999988776654
No 363
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=70.97 E-value=2.4 Score=48.92 Aligned_cols=24 Identities=29% Similarity=0.432 Sum_probs=19.9
Q ss_pred CeeEEeCCCCCChhHHHHHHHHHH
Q 042849 690 PFTLVQGPPGTGKTHTVWGMLNVI 713 (1019)
Q Consensus 690 ~fsLIQGPPGTGKTkTI~~LL~~L 713 (1019)
.+.+|-|++|+|||+|+..|...+
T Consensus 101 ~vI~ivG~~GvGKTT~a~~LA~~l 124 (433)
T 2xxa_A 101 AVVLMAGLQGAGKTTSVGKLGKFL 124 (433)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 456677999999999999998654
No 364
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=70.89 E-value=2.2 Score=40.43 Aligned_cols=20 Identities=20% Similarity=0.280 Sum_probs=16.9
Q ss_pred eEEeCCCCCChhHHHHHHHH
Q 042849 692 TLVQGPPGTGKTHTVWGMLN 711 (1019)
Q Consensus 692 sLIQGPPGTGKTkTI~~LL~ 711 (1019)
.+|-|+||+|||+++..++.
T Consensus 8 i~v~G~~~~GKssl~~~l~~ 27 (168)
T 1z2a_A 8 MVVVGNGAVGKSSMIQRYCK 27 (168)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHc
Confidence 47889999999998877764
No 365
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=70.89 E-value=2.5 Score=47.42 Aligned_cols=24 Identities=29% Similarity=0.411 Sum_probs=19.6
Q ss_pred CCeeEEeCCCCCChhHHHHHHHHH
Q 042849 689 WPFTLVQGPPGTGKTHTVWGMLNV 712 (1019)
Q Consensus 689 ~~fsLIQGPPGTGKTkTI~~LL~~ 712 (1019)
.++.+|.||-|.|||+.+-+|..+
T Consensus 23 ~g~~~i~G~NGaGKTTll~ai~~a 46 (365)
T 3qf7_A 23 SGITVVEGPNGAGKSSLFEAISFA 46 (365)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999877666554
No 366
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=70.83 E-value=17 Score=45.33 Aligned_cols=36 Identities=22% Similarity=0.310 Sum_probs=26.0
Q ss_pred cCcEEEEecccchhHHHhhh---------cCCCCEEEEcCCCCCC
Q 042849 945 EAEIVFTTVSSSGRKLFSRL---------THGFDMVVIDEAAQAS 980 (1019)
Q Consensus 945 eA~IV~sTlSssg~~ll~~l---------~~~FDvVIIDEAAQa~ 980 (1019)
.++||++|..-.|-+++... -..+.++|||||-...
T Consensus 172 ~~dIv~gTpgrlgfD~L~D~m~~~~~~l~lr~~~~lVlDEaD~mL 216 (844)
T 1tf5_A 172 AADITYSTNNELGFDYLRDNMVLYKEQMVQRPLHFAVIDEVDSIL 216 (844)
T ss_dssp HSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEEETHHHHH
T ss_pred CCCEEEECchhhhHHHHHHhhhcchhhhcccCCCEEEECchhhhh
Confidence 47999999987764443321 1368899999998764
No 367
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=70.69 E-value=2.3 Score=42.40 Aligned_cols=20 Identities=20% Similarity=0.399 Sum_probs=17.1
Q ss_pred eEEeCCCCCChhHHHHHHHH
Q 042849 692 TLVQGPPGTGKTHTVWGMLN 711 (1019)
Q Consensus 692 sLIQGPPGTGKTkTI~~LL~ 711 (1019)
.+|-||+|.|||+++..++.
T Consensus 8 v~lvG~~g~GKSTLl~~l~~ 27 (199)
T 2f9l_A 8 VVLIGDSGVGKSNLLSRFTR 27 (199)
T ss_dssp EEEESSTTSSHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHhc
Confidence 58999999999998877764
No 368
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=70.63 E-value=2 Score=48.09 Aligned_cols=23 Identities=26% Similarity=0.425 Sum_probs=19.8
Q ss_pred CCeeEEeCCCCCChhHHHHHHHH
Q 042849 689 WPFTLVQGPPGTGKTHTVWGMLN 711 (1019)
Q Consensus 689 ~~fsLIQGPPGTGKTkTI~~LL~ 711 (1019)
..+.+|-||.|+||||++..|+.
T Consensus 175 G~~i~ivG~sGsGKSTll~~l~~ 197 (361)
T 2gza_A 175 ERVIVVAGETGSGKTTLMKALMQ 197 (361)
T ss_dssp TCCEEEEESSSSCHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 46899999999999998877765
No 369
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=70.61 E-value=2.2 Score=40.35 Aligned_cols=20 Identities=20% Similarity=0.403 Sum_probs=17.0
Q ss_pred eEEeCCCCCChhHHHHHHHH
Q 042849 692 TLVQGPPGTGKTHTVWGMLN 711 (1019)
Q Consensus 692 sLIQGPPGTGKTkTI~~LL~ 711 (1019)
.+|-|+||+|||+++..++.
T Consensus 6 i~v~G~~~~GKssli~~l~~ 25 (170)
T 1ek0_A 6 LVLLGEAAVGKSSIVLRFVS 25 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 58899999999998877764
No 370
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=70.40 E-value=9.5 Score=51.30 Aligned_cols=79 Identities=18% Similarity=0.177 Sum_probs=50.4
Q ss_pred cCCChHHHHHHHHHHHHhhcCCCCCCCCCCCCeeEEeCCCCCChhHHHHHHHHHHHHHhhhhhhhhhhhhcCcccccCCC
Q 042849 659 RTFNGPQLAAIQWAAIHTAAGTSSGMTKSPWPFTLVQGPPGTGKTHTVWGMLNVIHLVQYQHYYNSLLKKLAPESYKQPN 738 (1019)
Q Consensus 659 ~~LNeSQ~eAI~~Al~~~~~g~s~~~~k~~~~fsLIQGPPGTGKTkTI~~LL~~Lll~~~q~~~~sLlk~l~~~~~kq~~ 738 (1019)
..||.-|.+++..|+. .+.=.||..|-|+|||.+ +.+.++. .|++....
T Consensus 78 ~~ln~iQs~~~~~al~-------------~~~N~lv~APTGsGKTlv--a~l~il~---------~l~~~~~~------- 126 (1724)
T 4f92_B 78 KTLNRIQSKLYRAALE-------------TDENLLLCAPTGAGKTNV--ALMCMLR---------EIGKHINM------- 126 (1724)
T ss_dssp SBCCHHHHHTHHHHHT-------------CCCCEEEECCTTSCCHHH--HHHHHHH---------HHGGGCCT-------
T ss_pred CCCCHHHHHHHHHHHc-------------CCCcEEEEeCCcchHHHH--HHHHHHH---------HHHhhccc-------
Confidence 4799999999987772 112269999999999954 3332221 11110000
Q ss_pred CCCCCcccCCchhHHhhhhhhhhhccCCCCCCCCcEEEEecCchhHHHHHHHHHh
Q 042849 739 ESNSDNVSMGSIDEVLQNMDQNLLRTLPKLCPKPRMLVCAPSNAATDELLTRVLD 793 (1019)
Q Consensus 739 ~~~s~~~~~g~~~e~~~~~~~n~~r~~~k~~~k~RILVCAPSNaAVDEll~RLl~ 793 (1019)
.......+.|+|+.||+-+-+.|+...+.+
T Consensus 127 -------------------------~~~~~~~~~k~lyiaP~kALa~e~~~~l~~ 156 (1724)
T 4f92_B 127 -------------------------DGTINVDDFKIIYIAPMRSLVQEMVGSFGK 156 (1724)
T ss_dssp -------------------------TSSCCTTSCEEEEECSSHHHHHHHHHHHHH
T ss_pred -------------------------cccccCCCCEEEEECCHHHHHHHHHHHHHH
Confidence 000012377999999999999999888743
No 371
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=70.29 E-value=2.3 Score=40.84 Aligned_cols=20 Identities=20% Similarity=0.381 Sum_probs=17.1
Q ss_pred eEEeCCCCCChhHHHHHHHH
Q 042849 692 TLVQGPPGTGKTHTVWGMLN 711 (1019)
Q Consensus 692 sLIQGPPGTGKTkTI~~LL~ 711 (1019)
.+|-|+||+|||+++..++.
T Consensus 10 i~v~G~~~~GKSsli~~l~~ 29 (177)
T 1wms_A 10 VILLGDGGVGKSSLMNRYVT 29 (177)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHc
Confidence 58999999999998877764
No 372
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=70.06 E-value=2.3 Score=40.79 Aligned_cols=20 Identities=30% Similarity=0.554 Sum_probs=17.1
Q ss_pred eEEeCCCCCChhHHHHHHHH
Q 042849 692 TLVQGPPGTGKTHTVWGMLN 711 (1019)
Q Consensus 692 sLIQGPPGTGKTkTI~~LL~ 711 (1019)
.+|-|+||+|||+++..++.
T Consensus 11 i~v~G~~~~GKSsli~~l~~ 30 (182)
T 1ky3_A 11 VIILGDSGVGKTSLMHRYVN 30 (182)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 58899999999998877764
No 373
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=70.00 E-value=2.4 Score=48.04 Aligned_cols=22 Identities=32% Similarity=0.395 Sum_probs=18.6
Q ss_pred eEEeCCCCCChhHHHHHHHHHH
Q 042849 692 TLVQGPPGTGKTHTVWGMLNVI 713 (1019)
Q Consensus 692 sLIQGPPGTGKTkTI~~LL~~L 713 (1019)
.+|-||+|+|||+++..++..+
T Consensus 56 ~~i~G~tGsGKs~~~~~li~~~ 77 (437)
T 1e9r_A 56 LLVNGATGTGKSVLLRELAYTG 77 (437)
T ss_dssp EEEEECTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 7999999999999987776543
No 374
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=69.98 E-value=2.6 Score=46.76 Aligned_cols=21 Identities=19% Similarity=0.202 Sum_probs=17.6
Q ss_pred eeEEeCCCCCChhHHHHHHHH
Q 042849 691 FTLVQGPPGTGKTHTVWGMLN 711 (1019)
Q Consensus 691 fsLIQGPPGTGKTkTI~~LL~ 711 (1019)
+.-|-||+|+||||++..|..
T Consensus 94 iigI~GpsGSGKSTl~~~L~~ 114 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTTSRVLKA 114 (321)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 788999999999988766554
No 375
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=69.73 E-value=2.2 Score=40.03 Aligned_cols=20 Identities=25% Similarity=0.451 Sum_probs=17.0
Q ss_pred eEEeCCCCCChhHHHHHHHH
Q 042849 692 TLVQGPPGTGKTHTVWGMLN 711 (1019)
Q Consensus 692 sLIQGPPGTGKTkTI~~LL~ 711 (1019)
.+|-|+||+|||+++..++.
T Consensus 6 i~v~G~~~~GKssl~~~l~~ 25 (166)
T 2ce2_X 6 LVVVGAGGVGKSALTIQLIQ 25 (166)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 58999999999998777654
No 376
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=69.67 E-value=2.2 Score=40.51 Aligned_cols=20 Identities=25% Similarity=0.458 Sum_probs=17.0
Q ss_pred eEEeCCCCCChhHHHHHHHH
Q 042849 692 TLVQGPPGTGKTHTVWGMLN 711 (1019)
Q Consensus 692 sLIQGPPGTGKTkTI~~LL~ 711 (1019)
.+|-|+||+|||+++..++.
T Consensus 6 i~v~G~~~~GKssli~~l~~ 25 (170)
T 1g16_A 6 ILLIGDSGVGKSCLLVRFVE 25 (170)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHh
Confidence 58899999999998877764
No 377
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=69.55 E-value=2 Score=46.20 Aligned_cols=20 Identities=20% Similarity=0.283 Sum_probs=15.9
Q ss_pred eeEEeCCCCCChhHHHHHHH
Q 042849 691 FTLVQGPPGTGKTHTVWGML 710 (1019)
Q Consensus 691 fsLIQGPPGTGKTkTI~~LL 710 (1019)
+..|-||||+||||+...|.
T Consensus 77 iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 77 VLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp EEEEEECTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 67999999999997655443
No 378
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=69.41 E-value=5.2 Score=41.95 Aligned_cols=23 Identities=13% Similarity=0.093 Sum_probs=19.5
Q ss_pred CCeeEEeCCCCCChhHHHHHHHH
Q 042849 689 WPFTLVQGPPGTGKTHTVWGMLN 711 (1019)
Q Consensus 689 ~~fsLIQGPPGTGKTkTI~~LL~ 711 (1019)
..+.+|.||.|+|||+.+..++.
T Consensus 28 G~l~vitG~MgsGKTT~lL~~a~ 50 (214)
T 2j9r_A 28 GWIEVICGSMFSGKSEELIRRVR 50 (214)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHH
T ss_pred CEEEEEECCCCCcHHHHHHHHHH
Confidence 35889999999999998877765
No 379
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=69.29 E-value=2.4 Score=40.03 Aligned_cols=20 Identities=20% Similarity=0.391 Sum_probs=16.8
Q ss_pred eEEeCCCCCChhHHHHHHHH
Q 042849 692 TLVQGPPGTGKTHTVWGMLN 711 (1019)
Q Consensus 692 sLIQGPPGTGKTkTI~~LL~ 711 (1019)
.+|-|+||+|||+++..++.
T Consensus 9 i~v~G~~~~GKssli~~l~~ 28 (170)
T 1r2q_A 9 LVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHc
Confidence 57899999999998877664
No 380
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=69.27 E-value=2.5 Score=46.73 Aligned_cols=24 Identities=25% Similarity=0.194 Sum_probs=20.2
Q ss_pred CCeeEEeCCCCCChhHHHHHHHHH
Q 042849 689 WPFTLVQGPPGTGKTHTVWGMLNV 712 (1019)
Q Consensus 689 ~~fsLIQGPPGTGKTkTI~~LL~~ 712 (1019)
..+..|-||||.|||+++..|...
T Consensus 56 ~~~i~i~G~~g~GKSTl~~~l~~~ 79 (341)
T 2p67_A 56 TLRLGVTGTPGAGKSTFLEAFGML 79 (341)
T ss_dssp SEEEEEEECTTSCHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHH
Confidence 357788999999999999888764
No 381
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=69.22 E-value=3.3 Score=42.83 Aligned_cols=23 Identities=17% Similarity=0.221 Sum_probs=17.5
Q ss_pred CCeeEEeCCCCCChhHHHHHHHH
Q 042849 689 WPFTLVQGPPGTGKTHTVWGMLN 711 (1019)
Q Consensus 689 ~~fsLIQGPPGTGKTkTI~~LL~ 711 (1019)
..+..|.||||+|||++...|..
T Consensus 16 ~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 16 TIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCEEEEECSSCSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 34678999999999976655543
No 382
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=69.21 E-value=1.7 Score=48.05 Aligned_cols=23 Identities=26% Similarity=0.372 Sum_probs=19.3
Q ss_pred CCeeEEeCCCCCChhHHHHHHHH
Q 042849 689 WPFTLVQGPPGTGKTHTVWGMLN 711 (1019)
Q Consensus 689 ~~fsLIQGPPGTGKTkTI~~LL~ 711 (1019)
..+.+|-||.|+||||++..|+.
T Consensus 171 g~~v~i~G~~GsGKTTll~~l~g 193 (330)
T 2pt7_A 171 GKNVIVCGGTGSGKTTYIKSIME 193 (330)
T ss_dssp TCCEEEEESTTSCHHHHHHHGGG
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 36799999999999998777654
No 383
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=69.02 E-value=2.5 Score=40.01 Aligned_cols=20 Identities=25% Similarity=0.682 Sum_probs=17.0
Q ss_pred eEEeCCCCCChhHHHHHHHH
Q 042849 692 TLVQGPPGTGKTHTVWGMLN 711 (1019)
Q Consensus 692 sLIQGPPGTGKTkTI~~LL~ 711 (1019)
.+|-|+||.|||+++..++.
T Consensus 9 i~v~G~~~~GKSsli~~l~~ 28 (170)
T 1z0j_A 9 VCLLGDTGVGKSSIMWRFVE 28 (170)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHc
Confidence 57889999999998877764
No 384
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=68.79 E-value=3.3 Score=40.51 Aligned_cols=22 Identities=27% Similarity=0.493 Sum_probs=18.5
Q ss_pred CeeEEeCCCCCChhHHHHHHHH
Q 042849 690 PFTLVQGPPGTGKTHTVWGMLN 711 (1019)
Q Consensus 690 ~fsLIQGPPGTGKTkTI~~LL~ 711 (1019)
.-.+|-|++|.|||+++..++.
T Consensus 49 ~~i~vvG~~g~GKSsll~~l~~ 70 (193)
T 2ged_A 49 PSIIIAGPQNSGKTSLLTLLTT 70 (193)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4579999999999998877764
No 385
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=68.60 E-value=2.5 Score=40.07 Aligned_cols=20 Identities=30% Similarity=0.454 Sum_probs=16.5
Q ss_pred eEEeCCCCCChhHHHHHHHH
Q 042849 692 TLVQGPPGTGKTHTVWGMLN 711 (1019)
Q Consensus 692 sLIQGPPGTGKTkTI~~LL~ 711 (1019)
.+|-|+||.|||+++..++.
T Consensus 6 i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 6 VAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEECCTTSSHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHc
Confidence 57899999999998776653
No 386
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=68.51 E-value=2.9 Score=44.01 Aligned_cols=22 Identities=32% Similarity=0.516 Sum_probs=17.7
Q ss_pred CCeeEEeCCCCCChhHHHHHHH
Q 042849 689 WPFTLVQGPPGTGKTHTVWGML 710 (1019)
Q Consensus 689 ~~fsLIQGPPGTGKTkTI~~LL 710 (1019)
..+..|-||+|+||||++..|.
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 3578899999999997766655
No 387
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=68.41 E-value=3.1 Score=44.04 Aligned_cols=22 Identities=23% Similarity=0.552 Sum_probs=18.8
Q ss_pred CeeEEeCCCCCChhHHHHHHHH
Q 042849 690 PFTLVQGPPGTGKTHTVWGMLN 711 (1019)
Q Consensus 690 ~fsLIQGPPGTGKTkTI~~LL~ 711 (1019)
-|-+|-||||+||||.+..|..
T Consensus 28 ~~i~~eG~~GsGKsT~~~~l~~ 49 (236)
T 3lv8_A 28 KFIVIEGLEGAGKSTAIQVVVE 49 (236)
T ss_dssp CEEEEEESTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999988777765
No 388
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=68.37 E-value=2.5 Score=42.00 Aligned_cols=21 Identities=19% Similarity=0.328 Sum_probs=17.6
Q ss_pred eeEEeCCCCCChhHHHHHHHH
Q 042849 691 FTLVQGPPGTGKTHTVWGMLN 711 (1019)
Q Consensus 691 fsLIQGPPGTGKTkTI~~LL~ 711 (1019)
..+|-||+|.|||+++..++.
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~ 51 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTR 51 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHhc
Confidence 468999999999998877664
No 389
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=68.34 E-value=2.6 Score=40.58 Aligned_cols=21 Identities=19% Similarity=0.275 Sum_probs=17.2
Q ss_pred eeEEeCCCCCChhHHHHHHHH
Q 042849 691 FTLVQGPPGTGKTHTVWGMLN 711 (1019)
Q Consensus 691 fsLIQGPPGTGKTkTI~~LL~ 711 (1019)
..+|-||||.|||+++..++.
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~ 25 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTG 25 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 468999999999988776653
No 390
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=68.29 E-value=2.5 Score=42.88 Aligned_cols=20 Identities=20% Similarity=0.332 Sum_probs=16.1
Q ss_pred eeEEeCCCCCChhHHHHHHH
Q 042849 691 FTLVQGPPGTGKTHTVWGML 710 (1019)
Q Consensus 691 fsLIQGPPGTGKTkTI~~LL 710 (1019)
+..|.||||+|||++...|.
T Consensus 5 ~i~i~G~~gsGkst~~~~l~ 24 (219)
T 2h92_A 5 NIALDGPAAAGKSTIAKRVA 24 (219)
T ss_dssp CEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 57899999999997665544
No 391
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=68.24 E-value=2.9 Score=43.99 Aligned_cols=24 Identities=25% Similarity=0.342 Sum_probs=19.5
Q ss_pred CCCeeEEeCCCCCChhHHHHHHHH
Q 042849 688 PWPFTLVQGPPGTGKTHTVWGMLN 711 (1019)
Q Consensus 688 ~~~fsLIQGPPGTGKTkTI~~LL~ 711 (1019)
+..+..|.||.|+||||++..|..
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~G 53 (237)
T 2cbz_A 30 EGALVAVVGQVGCGKSSLLSALLA 53 (237)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 456899999999999987766653
No 392
>2l8b_A Protein TRAI, DNA helicase I; RECD, hydrolase; NMR {Escherichia coli}
Probab=68.12 E-value=8.4 Score=39.66 Aligned_cols=63 Identities=10% Similarity=0.056 Sum_probs=47.2
Q ss_pred hHHHHHHHHHHHHhhcCCCCCCCCCCCCeeEEeCCCCCChhHHH-HHHHHHHHHHhhhhhhhhhhhhcCcccccCCCCCC
Q 042849 663 GPQLAAIQWAAIHTAAGTSSGMTKSPWPFTLVQGPPGTGKTHTV-WGMLNVIHLVQYQHYYNSLLKKLAPESYKQPNESN 741 (1019)
Q Consensus 663 eSQ~eAI~~Al~~~~~g~s~~~~k~~~~fsLIQGPPGTGKTkTI-~~LL~~Lll~~~q~~~~sLlk~l~~~~~kq~~~~~ 741 (1019)
.+|..|+...+.. ..+|.+|+|+=||+||++. ..++.+- +
T Consensus 37 ~~~~~a~~~l~~s------------~~~~~iv~g~ggs~~~~~~~a~L~~~a-------------~-------------- 77 (189)
T 2l8b_A 37 AGYSDAVSVLAQD------------RPSLAIVSGQGGAAGQRERVAELVMMA-------------R-------------- 77 (189)
T ss_dssp HHHHHHHHHHHHH------------SCCEECCBCSSCSHHHHHHHHHHHHHH-------------H--------------
T ss_pred ccchhHHHHHhcc------------CCceEEEecccchHHHHHHHHHHHHHH-------------H--------------
Confidence 5799999866532 4689999999999999994 3444310 0
Q ss_pred CCcccCCchhHHhhhhhhhhhccCCCCCCCCcEEEEecCchhHHHHHHHH
Q 042849 742 SDNVSMGSIDEVLQNMDQNLLRTLPKLCPKPRMLVCAPSNAATDELLTRV 791 (1019)
Q Consensus 742 s~~~~~g~~~e~~~~~~~n~~r~~~k~~~k~RILVCAPSNaAVDEll~RL 791 (1019)
..+++|.+.||+..+-.++...+
T Consensus 78 ---------------------------~~Gr~V~vLAp~~~s~~~l~~~~ 100 (189)
T 2l8b_A 78 ---------------------------EQGREVQIIAADRRSQMNMKQDE 100 (189)
T ss_dssp ---------------------------HTTCCEEEECSTTHHHHHHSCTT
T ss_pred ---------------------------hcCeEEEEEcCchHHHHHHHhhc
Confidence 12789999999999988876664
No 393
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=67.94 E-value=2.7 Score=39.51 Aligned_cols=20 Identities=20% Similarity=0.425 Sum_probs=16.7
Q ss_pred eEEeCCCCCChhHHHHHHHH
Q 042849 692 TLVQGPPGTGKTHTVWGMLN 711 (1019)
Q Consensus 692 sLIQGPPGTGKTkTI~~LL~ 711 (1019)
.+|-|+||.|||+++..++.
T Consensus 7 i~v~G~~~~GKssl~~~l~~ 26 (168)
T 1u8z_A 7 VIMVGSGGVGKSALTLQFMY 26 (168)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 58889999999998777654
No 394
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=67.84 E-value=2.7 Score=48.16 Aligned_cols=22 Identities=18% Similarity=0.406 Sum_probs=19.0
Q ss_pred CeeEEeCCCCCChhHHHHHHHH
Q 042849 690 PFTLVQGPPGTGKTHTVWGMLN 711 (1019)
Q Consensus 690 ~fsLIQGPPGTGKTkTI~~LL~ 711 (1019)
++.+|-||+|+|||++...|..
T Consensus 3 ~~i~i~GptgsGKttla~~La~ 24 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQ 24 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHH
T ss_pred cEEEEECcchhhHHHHHHHHHH
Confidence 5779999999999998877765
No 395
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=67.78 E-value=2.8 Score=39.84 Aligned_cols=20 Identities=25% Similarity=0.272 Sum_probs=16.8
Q ss_pred eEEeCCCCCChhHHHHHHHH
Q 042849 692 TLVQGPPGTGKTHTVWGMLN 711 (1019)
Q Consensus 692 sLIQGPPGTGKTkTI~~LL~ 711 (1019)
.+|-|+||+|||+++..++.
T Consensus 9 i~v~G~~~~GKssli~~l~~ 28 (170)
T 1z08_A 9 VVLLGEGCVGKTSLVLRYCE 28 (170)
T ss_dssp EEEECCTTSCHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHc
Confidence 58899999999998877654
No 396
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=67.76 E-value=3.2 Score=48.48 Aligned_cols=23 Identities=22% Similarity=0.211 Sum_probs=19.7
Q ss_pred CeeEEeCCCCCChhHHHHHHHHH
Q 042849 690 PFTLVQGPPGTGKTHTVWGMLNV 712 (1019)
Q Consensus 690 ~fsLIQGPPGTGKTkTI~~LL~~ 712 (1019)
...+|.||||+|||+++..|+..
T Consensus 152 q~~~i~G~sGvGKTtL~~~l~~~ 174 (473)
T 1sky_E 152 GKIGLFGGAGVGKTVLIQELIHN 174 (473)
T ss_dssp CEEEEECCSSSCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCccHHHHHHHhh
Confidence 45899999999999988887764
No 397
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=67.46 E-value=2.7 Score=40.14 Aligned_cols=20 Identities=30% Similarity=0.436 Sum_probs=16.8
Q ss_pred eEEeCCCCCChhHHHHHHHH
Q 042849 692 TLVQGPPGTGKTHTVWGMLN 711 (1019)
Q Consensus 692 sLIQGPPGTGKTkTI~~LL~ 711 (1019)
.+|-|+||.|||+++..++.
T Consensus 7 i~i~G~~~vGKSsl~~~l~~ 26 (175)
T 2nzj_A 7 VVLLGDPGVGKTSLASLFAG 26 (175)
T ss_dssp EEEECCTTSSHHHHHHHHHC
T ss_pred EEEECCCCccHHHHHHHHhc
Confidence 68999999999998776653
No 398
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=67.27 E-value=2.9 Score=39.52 Aligned_cols=20 Identities=25% Similarity=0.401 Sum_probs=16.6
Q ss_pred eEEeCCCCCChhHHHHHHHH
Q 042849 692 TLVQGPPGTGKTHTVWGMLN 711 (1019)
Q Consensus 692 sLIQGPPGTGKTkTI~~LL~ 711 (1019)
.+|-|+||+|||+++..++.
T Consensus 6 i~v~G~~~~GKssli~~l~~ 25 (167)
T 1c1y_A 6 LVVLGSGGVGKSALTVQFVQ 25 (167)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHc
Confidence 47889999999998777654
No 399
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=67.27 E-value=4.7 Score=44.78 Aligned_cols=25 Identities=20% Similarity=0.145 Sum_probs=21.0
Q ss_pred CCCeeEEeCCCCCChhHHHHHHHHH
Q 042849 688 PWPFTLVQGPPGTGKTHTVWGMLNV 712 (1019)
Q Consensus 688 ~~~fsLIQGPPGTGKTkTI~~LL~~ 712 (1019)
...|.++-|-+|+|||++.+++...
T Consensus 25 ~~~i~v~sgKGGvGKTTvA~~LA~~ 49 (349)
T 3ug7_A 25 GTKYIMFGGKGGVGKTTMSAATGVY 49 (349)
T ss_dssp SCEEEEEECSSSTTHHHHHHHHHHH
T ss_pred CCEEEEEeCCCCccHHHHHHHHHHH
Confidence 3468999999999999998888653
No 400
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=67.15 E-value=2.9 Score=46.68 Aligned_cols=23 Identities=17% Similarity=0.043 Sum_probs=19.7
Q ss_pred CCeeEEeCCCCCChhHHHHHHHH
Q 042849 689 WPFTLVQGPPGTGKTHTVWGMLN 711 (1019)
Q Consensus 689 ~~fsLIQGPPGTGKTkTI~~LL~ 711 (1019)
..+..|-||+|+|||+++..|+.
T Consensus 71 Gq~~gIiG~nGaGKTTLl~~I~g 93 (347)
T 2obl_A 71 GQRIGIFAGSGVGKSTLLGMICN 93 (347)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 46899999999999999777665
No 401
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=66.81 E-value=2.8 Score=39.88 Aligned_cols=19 Identities=21% Similarity=0.319 Sum_probs=16.3
Q ss_pred eEEeCCCCCChhHHHHHHH
Q 042849 692 TLVQGPPGTGKTHTVWGML 710 (1019)
Q Consensus 692 sLIQGPPGTGKTkTI~~LL 710 (1019)
.+|-|+||+|||+++..++
T Consensus 5 i~ivG~~~~GKSsli~~l~ 23 (169)
T 3q85_A 5 VMLVGESGVGKSTLAGTFG 23 (169)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 4899999999999877765
No 402
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=66.78 E-value=2.7 Score=40.22 Aligned_cols=20 Identities=20% Similarity=0.297 Sum_probs=16.6
Q ss_pred eEEeCCCCCChhHHHHHHHH
Q 042849 692 TLVQGPPGTGKTHTVWGMLN 711 (1019)
Q Consensus 692 sLIQGPPGTGKTkTI~~LL~ 711 (1019)
.+|-|+||+|||+++..++.
T Consensus 17 i~v~G~~~~GKssli~~l~~ 36 (179)
T 2y8e_A 17 LVFLGEQSVGKTSLITRFMY 36 (179)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHc
Confidence 47789999999998877663
No 403
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=66.71 E-value=2.8 Score=46.89 Aligned_cols=22 Identities=23% Similarity=0.425 Sum_probs=18.8
Q ss_pred CeeEEeCCCCCChhHHHHHHHH
Q 042849 690 PFTLVQGPPGTGKTHTVWGMLN 711 (1019)
Q Consensus 690 ~fsLIQGPPGTGKTkTI~~LL~ 711 (1019)
.+.+|-||+|+|||++...|..
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~ 62 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAA 62 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999998877754
No 404
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=66.24 E-value=4.1 Score=39.06 Aligned_cols=22 Identities=23% Similarity=0.324 Sum_probs=18.1
Q ss_pred CeeEEeCCCCCChhHHHHHHHH
Q 042849 690 PFTLVQGPPGTGKTHTVWGMLN 711 (1019)
Q Consensus 690 ~fsLIQGPPGTGKTkTI~~LL~ 711 (1019)
.-.+|-|+||+|||+++..++.
T Consensus 9 ~~i~v~G~~~~GKssl~~~l~~ 30 (178)
T 2lkc_A 9 PVVTIMGHVDHGKTTLLDAIRH 30 (178)
T ss_dssp CEEEEESCTTTTHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4578999999999998877653
No 405
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=66.23 E-value=3.1 Score=39.35 Aligned_cols=20 Identities=25% Similarity=0.370 Sum_probs=17.0
Q ss_pred eEEeCCCCCChhHHHHHHHH
Q 042849 692 TLVQGPPGTGKTHTVWGMLN 711 (1019)
Q Consensus 692 sLIQGPPGTGKTkTI~~LL~ 711 (1019)
.+|-|+||+|||+++..++.
T Consensus 3 i~~~G~~~~GKssl~~~l~~ 22 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKL 22 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHc
Confidence 48899999999998877764
No 406
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=66.09 E-value=3 Score=44.14 Aligned_cols=19 Identities=26% Similarity=0.452 Sum_probs=15.0
Q ss_pred EEeCCCCCChhHHHHHHHH
Q 042849 693 LVQGPPGTGKTHTVWGMLN 711 (1019)
Q Consensus 693 LIQGPPGTGKTkTI~~LL~ 711 (1019)
-|-||||+|||+....|..
T Consensus 12 ~~~G~pGsGKsT~a~~L~~ 30 (230)
T 3gmt_A 12 ILLGAPGAGKGTQANFIKE 30 (230)
T ss_dssp EEECCTTSCHHHHHHHHHH
T ss_pred eeECCCCCCHHHHHHHHHH
Confidence 5789999999977666554
No 407
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=66.08 E-value=3 Score=46.32 Aligned_cols=22 Identities=27% Similarity=0.415 Sum_probs=18.9
Q ss_pred CeeEEeCCCCCChhHHHHHHHH
Q 042849 690 PFTLVQGPPGTGKTHTVWGMLN 711 (1019)
Q Consensus 690 ~fsLIQGPPGTGKTkTI~~LL~ 711 (1019)
++.+|-||+|+|||++...|..
T Consensus 4 ~~i~i~GptgsGKt~la~~La~ 25 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAK 25 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCcCCHHHHHHHHHH
Confidence 5789999999999998877764
No 408
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=66.06 E-value=3.3 Score=46.64 Aligned_cols=22 Identities=23% Similarity=0.507 Sum_probs=18.5
Q ss_pred CeeEEeCCCCCChhHHHHHHHH
Q 042849 690 PFTLVQGPPGTGKTHTVWGMLN 711 (1019)
Q Consensus 690 ~fsLIQGPPGTGKTkTI~~LL~ 711 (1019)
.++.|-||||.|||+++-.|+.
T Consensus 216 ~~~~lvG~sG~GKSTLln~L~g 237 (358)
T 2rcn_A 216 RISIFAGQSGVGKSSLLNALLG 237 (358)
T ss_dssp SEEEEECCTTSSHHHHHHHHHC
T ss_pred CEEEEECCCCccHHHHHHHHhc
Confidence 5789999999999988766653
No 409
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=66.01 E-value=3.4 Score=44.88 Aligned_cols=22 Identities=27% Similarity=0.314 Sum_probs=18.3
Q ss_pred CeeEEeCCCCCChhHHHHHHHH
Q 042849 690 PFTLVQGPPGTGKTHTVWGMLN 711 (1019)
Q Consensus 690 ~fsLIQGPPGTGKTkTI~~LL~ 711 (1019)
.+..|-||+|+|||+++..|..
T Consensus 99 ~~i~i~g~~G~GKTT~~~~la~ 120 (295)
T 1ls1_A 99 NLWFLVGLQGSGKTTTAAKLAL 120 (295)
T ss_dssp EEEEEECCTTTTHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4566679999999999988875
No 410
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=65.91 E-value=2 Score=43.12 Aligned_cols=23 Identities=22% Similarity=0.352 Sum_probs=19.3
Q ss_pred CeeEEeCCCCCChhHHHHHHHHH
Q 042849 690 PFTLVQGPPGTGKTHTVWGMLNV 712 (1019)
Q Consensus 690 ~fsLIQGPPGTGKTkTI~~LL~~ 712 (1019)
.+..|-||.|+||||++..|+..
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~ 25 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPI 25 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 46789999999999988877763
No 411
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=65.71 E-value=3 Score=39.97 Aligned_cols=20 Identities=25% Similarity=0.264 Sum_probs=17.0
Q ss_pred eEEeCCCCCChhHHHHHHHH
Q 042849 692 TLVQGPPGTGKTHTVWGMLN 711 (1019)
Q Consensus 692 sLIQGPPGTGKTkTI~~LL~ 711 (1019)
.+|-|+||+|||+++..++.
T Consensus 9 i~v~G~~~~GKssl~~~l~~ 28 (178)
T 2hxs_A 9 IVVLGDGASGKTSLTTCFAQ 28 (178)
T ss_dssp EEEECCTTSSHHHHHHHHHG
T ss_pred EEEECcCCCCHHHHHHHHHh
Confidence 57899999999998877764
No 412
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=65.71 E-value=3.2 Score=39.70 Aligned_cols=20 Identities=20% Similarity=0.370 Sum_probs=17.1
Q ss_pred eEEeCCCCCChhHHHHHHHH
Q 042849 692 TLVQGPPGTGKTHTVWGMLN 711 (1019)
Q Consensus 692 sLIQGPPGTGKTkTI~~LL~ 711 (1019)
.+|-|+||+|||+++..++.
T Consensus 18 i~v~G~~~~GKSsli~~l~~ 37 (179)
T 1z0f_A 18 YIIIGDMGVGKSCLLHQFTE 37 (179)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHc
Confidence 68889999999998877764
No 413
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=65.66 E-value=3.9 Score=42.48 Aligned_cols=22 Identities=23% Similarity=0.448 Sum_probs=18.8
Q ss_pred CeeEEeCCCCCChhHHHHHHHH
Q 042849 690 PFTLVQGPPGTGKTHTVWGMLN 711 (1019)
Q Consensus 690 ~fsLIQGPPGTGKTkTI~~LL~ 711 (1019)
-|-+|-||+|+||||.+..|..
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~ 25 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVE 25 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999988877765
No 414
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=65.65 E-value=3.1 Score=40.22 Aligned_cols=20 Identities=30% Similarity=0.516 Sum_probs=16.7
Q ss_pred eEEeCCCCCChhHHHHHHHH
Q 042849 692 TLVQGPPGTGKTHTVWGMLN 711 (1019)
Q Consensus 692 sLIQGPPGTGKTkTI~~LL~ 711 (1019)
.+|-|+||+|||+++-.++.
T Consensus 14 i~v~G~~~~GKSsli~~l~~ 33 (195)
T 3bc1_A 14 FLALGDSGVGKTSVLYQYTD 33 (195)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 58899999999998777654
No 415
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=65.60 E-value=3.1 Score=43.30 Aligned_cols=23 Identities=22% Similarity=0.377 Sum_probs=18.6
Q ss_pred CCCeeEEeCCCCCChhHHHHHHH
Q 042849 688 PWPFTLVQGPPGTGKTHTVWGML 710 (1019)
Q Consensus 688 ~~~fsLIQGPPGTGKTkTI~~LL 710 (1019)
+..+..|-||.|+||||++..|.
T Consensus 29 ~Ge~~~iiG~nGsGKSTLl~~l~ 51 (224)
T 2pcj_A 29 KGEFVSIIGASGSGKSTLLYILG 51 (224)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHh
Confidence 34689999999999998766554
No 416
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=65.59 E-value=3.3 Score=43.02 Aligned_cols=24 Identities=25% Similarity=0.293 Sum_probs=19.1
Q ss_pred CCCeeEEeCCCCCChhHHHHHHHH
Q 042849 688 PWPFTLVQGPPGTGKTHTVWGMLN 711 (1019)
Q Consensus 688 ~~~fsLIQGPPGTGKTkTI~~LL~ 711 (1019)
+..+..|-||.|+||||++..|..
T Consensus 34 ~Ge~~~iiG~NGsGKSTLlk~l~G 57 (214)
T 1sgw_A 34 KGNVVNFHGPNGIGKTTLLKTIST 57 (214)
T ss_dssp TTCCEEEECCTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 346889999999999987666543
No 417
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=65.45 E-value=3.6 Score=43.43 Aligned_cols=22 Identities=23% Similarity=0.445 Sum_probs=18.6
Q ss_pred CeeEEeCCCCCChhHHHHHHHH
Q 042849 690 PFTLVQGPPGTGKTHTVWGMLN 711 (1019)
Q Consensus 690 ~fsLIQGPPGTGKTkTI~~LL~ 711 (1019)
.+..|-||.|+||||++..|..
T Consensus 25 e~~~liG~nGsGKSTLl~~l~G 46 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAG 46 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHhC
Confidence 7889999999999987766654
No 418
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=65.35 E-value=3.4 Score=55.13 Aligned_cols=25 Identities=20% Similarity=0.283 Sum_probs=21.7
Q ss_pred CCCeeEEeCCCCCChhHHHHHHHHH
Q 042849 688 PWPFTLVQGPPGTGKTHTVWGMLNV 712 (1019)
Q Consensus 688 ~~~fsLIQGPPGTGKTkTI~~LL~~ 712 (1019)
+..+.||.||||+|||++...++..
T Consensus 731 ~G~lVlI~G~PG~GKTtLal~lA~~ 755 (1706)
T 3cmw_A 731 MGRIVEIYGPESSGKTTLTLQVIAA 755 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCcHHHHHHHHHH
Confidence 4578999999999999999888764
No 419
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=65.30 E-value=3.3 Score=39.86 Aligned_cols=20 Identities=25% Similarity=0.463 Sum_probs=16.8
Q ss_pred eEEeCCCCCChhHHHHHHHH
Q 042849 692 TLVQGPPGTGKTHTVWGMLN 711 (1019)
Q Consensus 692 sLIQGPPGTGKTkTI~~LL~ 711 (1019)
.+|-|+||+|||+++..++.
T Consensus 15 i~v~G~~~~GKSsli~~l~~ 34 (181)
T 2efe_B 15 LVLLGDVGAGKSSLVLRFVK 34 (181)
T ss_dssp EEEECCTTSCHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHc
Confidence 58889999999998777654
No 420
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=65.26 E-value=3.4 Score=40.51 Aligned_cols=20 Identities=25% Similarity=0.419 Sum_probs=16.9
Q ss_pred eEEeCCCCCChhHHHHHHHH
Q 042849 692 TLVQGPPGTGKTHTVWGMLN 711 (1019)
Q Consensus 692 sLIQGPPGTGKTkTI~~LL~ 711 (1019)
.+|-|+||+|||+++..++.
T Consensus 28 i~v~G~~~~GKSsLi~~l~~ 47 (193)
T 2oil_A 28 VVLIGESGVGKTNLLSRFTR 47 (193)
T ss_dssp EEEESSTTSSHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHhc
Confidence 58899999999998777654
No 421
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=64.74 E-value=19 Score=45.22 Aligned_cols=36 Identities=19% Similarity=0.316 Sum_probs=26.4
Q ss_pred cCcEEEEecccchhHHHhhh---------cCCCCEEEEcCCCCCC
Q 042849 945 EAEIVFTTVSSSGRKLFSRL---------THGFDMVVIDEAAQAS 980 (1019)
Q Consensus 945 eA~IV~sTlSssg~~ll~~l---------~~~FDvVIIDEAAQa~ 980 (1019)
.++||++|.+-.|-+++... -..+.++|||||-...
T Consensus 200 ~~DIvygTpgrlgfDyLrD~m~~~~~~l~lr~l~~lIVDEaDsmL 244 (922)
T 1nkt_A 200 NADITYGTNNEFGFDYLRDNMAHSLDDLVQRGHHYAIVDEVDSIL 244 (922)
T ss_dssp HSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEETTHHHHH
T ss_pred CCCEEEECchHhhHHHHHhhhhccHhhhccCCCCEEEEeChHHHH
Confidence 47999999987764444332 1368999999998765
No 422
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=64.69 E-value=3.9 Score=43.80 Aligned_cols=24 Identities=25% Similarity=0.434 Sum_probs=19.8
Q ss_pred CCCeeEEeCCCCCChhHHHHHHHH
Q 042849 688 PWPFTLVQGPPGTGKTHTVWGMLN 711 (1019)
Q Consensus 688 ~~~fsLIQGPPGTGKTkTI~~LL~ 711 (1019)
+..+..|-||.|+||||++..|..
T Consensus 45 ~Ge~~~l~G~NGsGKSTLlk~l~G 68 (267)
T 2zu0_C 45 PGEVHAIMGPNGSGKSTLSATLAG 68 (267)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 457899999999999988766654
No 423
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=64.69 E-value=3.4 Score=39.93 Aligned_cols=20 Identities=25% Similarity=0.466 Sum_probs=17.0
Q ss_pred eEEeCCCCCChhHHHHHHHH
Q 042849 692 TLVQGPPGTGKTHTVWGMLN 711 (1019)
Q Consensus 692 sLIQGPPGTGKTkTI~~LL~ 711 (1019)
.+|-|+||.|||+++..++.
T Consensus 7 i~v~G~~~~GKSsli~~l~~ 26 (189)
T 4dsu_A 7 LVVVGADGVGKSALTIQLIQ 26 (189)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 58999999999998877764
No 424
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=64.69 E-value=3.2 Score=46.43 Aligned_cols=22 Identities=23% Similarity=0.400 Sum_probs=18.7
Q ss_pred CeeEEeCCCCCChhHHHHHHHH
Q 042849 690 PFTLVQGPPGTGKTHTVWGMLN 711 (1019)
Q Consensus 690 ~fsLIQGPPGTGKTkTI~~LL~ 711 (1019)
.+.+|-||+|+|||++...|..
T Consensus 8 ~lI~I~GptgSGKTtla~~La~ 29 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAK 29 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHH
Confidence 4789999999999998877765
No 425
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=64.62 E-value=3.4 Score=43.51 Aligned_cols=24 Identities=25% Similarity=0.372 Sum_probs=19.4
Q ss_pred CCCeeEEeCCCCCChhHHHHHHHH
Q 042849 688 PWPFTLVQGPPGTGKTHTVWGMLN 711 (1019)
Q Consensus 688 ~~~fsLIQGPPGTGKTkTI~~LL~ 711 (1019)
+..+..|-||.|+||||++..|..
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~G 50 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKSTIFSLLER 50 (243)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 446899999999999987766543
No 426
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=64.58 E-value=3.7 Score=43.41 Aligned_cols=24 Identities=21% Similarity=0.213 Sum_probs=19.6
Q ss_pred CCCeeEEeCCCCCChhHHHHHHHH
Q 042849 688 PWPFTLVQGPPGTGKTHTVWGMLN 711 (1019)
Q Consensus 688 ~~~fsLIQGPPGTGKTkTI~~LL~ 711 (1019)
+..+..|-||.|+||||++..|..
T Consensus 28 ~Ge~~~l~G~nGsGKSTLlk~l~G 51 (250)
T 2d2e_A 28 KGEVHALMGPNGAGKSTLGKILAG 51 (250)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 346899999999999987766654
No 427
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=64.49 E-value=4.2 Score=42.45 Aligned_cols=23 Identities=26% Similarity=0.265 Sum_probs=19.2
Q ss_pred CCeeEEeCCCCCChhHHHHHHHH
Q 042849 689 WPFTLVQGPPGTGKTHTVWGMLN 711 (1019)
Q Consensus 689 ~~fsLIQGPPGTGKTkTI~~LL~ 711 (1019)
.-|-+|-||||+|||+.+..|..
T Consensus 5 g~~i~~eG~~g~GKst~~~~l~~ 27 (216)
T 3tmk_A 5 GKLILIEGLDRTGKTTQCNILYK 27 (216)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35889999999999988777665
No 428
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=64.35 E-value=3.5 Score=39.16 Aligned_cols=20 Identities=30% Similarity=0.517 Sum_probs=16.9
Q ss_pred eEEeCCCCCChhHHHHHHHH
Q 042849 692 TLVQGPPGTGKTHTVWGMLN 711 (1019)
Q Consensus 692 sLIQGPPGTGKTkTI~~LL~ 711 (1019)
.+|-|+||.|||+++..++.
T Consensus 10 i~v~G~~~~GKssl~~~l~~ 29 (171)
T 1upt_A 10 ILILGLDGAGKTTILYRLQV 29 (171)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 68999999999998777653
No 429
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=64.22 E-value=3.1 Score=43.19 Aligned_cols=22 Identities=18% Similarity=0.116 Sum_probs=17.6
Q ss_pred CeeEEeCCCCCChhHHHHHHHH
Q 042849 690 PFTLVQGPPGTGKTHTVWGMLN 711 (1019)
Q Consensus 690 ~fsLIQGPPGTGKTkTI~~LL~ 711 (1019)
-+-.|.|++|+||||.+..|..
T Consensus 3 ~~i~~~G~~g~GKtt~~~~l~~ 24 (241)
T 2ocp_A 3 RRLSIEGNIAVGKSTFVKLLTK 24 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHH
Confidence 3678999999999987766654
No 430
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=64.12 E-value=16 Score=41.36 Aligned_cols=38 Identities=18% Similarity=0.062 Sum_probs=29.2
Q ss_pred CCChHHHHHHHHHHHHhhcCCCCCCCCCCCCeeEEeCCCCCChhHHHHHHHH
Q 042849 660 TFNGPQLAAIQWAAIHTAAGTSSGMTKSPWPFTLVQGPPGTGKTHTVWGMLN 711 (1019)
Q Consensus 660 ~LNeSQ~eAI~~Al~~~~~g~s~~~~k~~~~fsLIQGPPGTGKTkTI~~LL~ 711 (1019)
.|++.|...+.. +. ...+.+|..|-+.|||+++++++.
T Consensus 163 ~L~p~Qk~il~~-l~-------------~~R~~vi~~sRq~GKT~l~a~~~l 200 (385)
T 2o0j_A 163 QLRDYQRDMLKI-MS-------------SKRMTVCNLSRQLGKTTVVAIFLA 200 (385)
T ss_dssp CCCHHHHHHHHH-HH-------------HSSEEEEEECSSSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHh-hc-------------cCcEEEEEEcCcCChhHHHHHHHH
Confidence 789999887763 31 126799999999999998877653
No 431
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=63.95 E-value=4.8 Score=46.11 Aligned_cols=23 Identities=22% Similarity=0.245 Sum_probs=19.8
Q ss_pred CCeeEEeCCCCCChhHHHHHHHH
Q 042849 689 WPFTLVQGPPGTGKTHTVWGMLN 711 (1019)
Q Consensus 689 ~~fsLIQGPPGTGKTkTI~~LL~ 711 (1019)
.++..|-||+|.||||++-.|..
T Consensus 69 ~~~valvG~nGaGKSTLln~L~G 91 (413)
T 1tq4_A 69 VLNVAVTGETGSGKSSFINTLRG 91 (413)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHT
T ss_pred CeEEEEECCCCCcHHHHHHHHhC
Confidence 36889999999999998877765
No 432
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=63.73 E-value=3.9 Score=43.61 Aligned_cols=24 Identities=17% Similarity=0.173 Sum_probs=19.5
Q ss_pred CCCeeEEeCCCCCChhHHHHHHHH
Q 042849 688 PWPFTLVQGPPGTGKTHTVWGMLN 711 (1019)
Q Consensus 688 ~~~fsLIQGPPGTGKTkTI~~LL~ 711 (1019)
+..+..|-||.|+||||++..|..
T Consensus 45 ~Ge~~~i~G~nGsGKSTLl~~l~G 68 (260)
T 2ghi_A 45 SGTTCALVGHTGSGKSTIAKLLYR 68 (260)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 456899999999999987766653
No 433
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=63.66 E-value=3.1 Score=40.78 Aligned_cols=20 Identities=25% Similarity=0.537 Sum_probs=16.6
Q ss_pred eEEeCCCCCChhHHHHHHHH
Q 042849 692 TLVQGPPGTGKTHTVWGMLN 711 (1019)
Q Consensus 692 sLIQGPPGTGKTkTI~~LL~ 711 (1019)
.+|-|+||.|||+++..++.
T Consensus 5 v~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 5 LMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEESCTTSSHHHHHHHHTC
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 58999999999988766653
No 434
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=63.59 E-value=2.9 Score=40.93 Aligned_cols=22 Identities=23% Similarity=0.428 Sum_probs=18.3
Q ss_pred CeeEEeCCCCCChhHHHHHHHH
Q 042849 690 PFTLVQGPPGTGKTHTVWGMLN 711 (1019)
Q Consensus 690 ~fsLIQGPPGTGKTkTI~~LL~ 711 (1019)
.-.+|-|+||.|||+++..++.
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~ 45 (195)
T 1svi_A 24 PEIALAGRSNVGKSSFINSLIN 45 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 3468999999999998877764
No 435
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=63.55 E-value=3.3 Score=40.47 Aligned_cols=20 Identities=25% Similarity=0.285 Sum_probs=16.8
Q ss_pred eEEeCCCCCChhHHHHHHHH
Q 042849 692 TLVQGPPGTGKTHTVWGMLN 711 (1019)
Q Consensus 692 sLIQGPPGTGKTkTI~~LL~ 711 (1019)
.+|-|+||+|||+++..++.
T Consensus 10 i~v~G~~~vGKSsli~~l~~ 29 (184)
T 1m7b_A 10 IVVVGDSQCGKTALLHVFAK 29 (184)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 57899999999998877654
No 436
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=63.50 E-value=3.4 Score=39.54 Aligned_cols=20 Identities=25% Similarity=0.400 Sum_probs=17.1
Q ss_pred eEEeCCCCCChhHHHHHHHH
Q 042849 692 TLVQGPPGTGKTHTVWGMLN 711 (1019)
Q Consensus 692 sLIQGPPGTGKTkTI~~LL~ 711 (1019)
.+|-|+||.|||+++..++.
T Consensus 12 i~v~G~~~~GKssli~~l~~ 31 (181)
T 2fn4_A 12 LVVVGGGGVGKSALTIQFIQ 31 (181)
T ss_dssp EEEEECTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 58899999999998877764
No 437
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=63.44 E-value=4 Score=43.54 Aligned_cols=24 Identities=17% Similarity=0.184 Sum_probs=19.4
Q ss_pred CCCeeEEeCCCCCChhHHHHHHHH
Q 042849 688 PWPFTLVQGPPGTGKTHTVWGMLN 711 (1019)
Q Consensus 688 ~~~fsLIQGPPGTGKTkTI~~LL~ 711 (1019)
...+..|-||.|+||||++..|..
T Consensus 31 ~Ge~~~liG~nGsGKSTLlk~l~G 54 (262)
T 1b0u_A 31 AGDVISIIGSSGSGKSTFLRCINF 54 (262)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 457899999999999987766543
No 438
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=63.35 E-value=3.7 Score=40.11 Aligned_cols=20 Identities=25% Similarity=0.451 Sum_probs=17.1
Q ss_pred eEEeCCCCCChhHHHHHHHH
Q 042849 692 TLVQGPPGTGKTHTVWGMLN 711 (1019)
Q Consensus 692 sLIQGPPGTGKTkTI~~LL~ 711 (1019)
.+|-|+||+|||+++..++.
T Consensus 24 i~vvG~~~~GKSsli~~l~~ 43 (190)
T 3con_A 24 LVVVGAGGVGKSALTIQLIQ 43 (190)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHc
Confidence 58889999999998877764
No 439
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=63.34 E-value=3.7 Score=40.25 Aligned_cols=20 Identities=25% Similarity=0.405 Sum_probs=17.0
Q ss_pred eEEeCCCCCChhHHHHHHHH
Q 042849 692 TLVQGPPGTGKTHTVWGMLN 711 (1019)
Q Consensus 692 sLIQGPPGTGKTkTI~~LL~ 711 (1019)
.+|-|+||+|||+++..++.
T Consensus 25 i~vvG~~~~GKSsli~~l~~ 44 (189)
T 2gf9_A 25 LLLIGNSSVGKTSFLFRYAD 44 (189)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHc
Confidence 58899999999998877664
No 440
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=63.32 E-value=4.1 Score=43.48 Aligned_cols=24 Identities=29% Similarity=0.292 Sum_probs=19.4
Q ss_pred CCCeeEEeCCCCCChhHHHHHHHH
Q 042849 688 PWPFTLVQGPPGTGKTHTVWGMLN 711 (1019)
Q Consensus 688 ~~~fsLIQGPPGTGKTkTI~~LL~ 711 (1019)
+..+..|-||.|+||||++..|..
T Consensus 40 ~Gei~~l~G~NGsGKSTLlk~l~G 63 (256)
T 1vpl_A 40 EGEIFGLIGPNGAGKTTTLRIIST 63 (256)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCcEEEEECCCCCCHHHHHHHHhc
Confidence 456899999999999987766543
No 441
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=63.31 E-value=3.7 Score=39.50 Aligned_cols=20 Identities=20% Similarity=0.425 Sum_probs=16.9
Q ss_pred eEEeCCCCCChhHHHHHHHH
Q 042849 692 TLVQGPPGTGKTHTVWGMLN 711 (1019)
Q Consensus 692 sLIQGPPGTGKTkTI~~LL~ 711 (1019)
.+|-|+||.|||+++..++.
T Consensus 21 i~v~G~~~~GKSsli~~l~~ 40 (187)
T 2a9k_A 21 VIMVGSGGVGKSALTLQFMY 40 (187)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhh
Confidence 58899999999998777664
No 442
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=63.23 E-value=22 Score=44.70 Aligned_cols=36 Identities=19% Similarity=0.242 Sum_probs=25.3
Q ss_pred cCcEEEEecccchhHHHhhh---------cC---CCCEEEEcCCCCCC
Q 042849 945 EAEIVFTTVSSSGRKLFSRL---------TH---GFDMVVIDEAAQAS 980 (1019)
Q Consensus 945 eA~IV~sTlSssg~~ll~~l---------~~---~FDvVIIDEAAQa~ 980 (1019)
.++||++|.+-.+-+++... -. .+.++|||||-.+.
T Consensus 168 ~~DIvyGTpgrlgfDyLrd~m~~~~~~l~~r~d~~l~~lIIDEaDsmL 215 (997)
T 2ipc_A 168 LADVTYVTNSELGFDYLRDNMAISPDQLVLRHDHPLHYAIIDEVDSIL 215 (997)
T ss_dssp TSSEEEEEHHHHHHHHHHHTSCSSTTTCCSCSSSSSCEEEETTHHHHT
T ss_pred CCCEEEECchhhhhHHHHHhhhcchhhcccccCCCcceEEEechHHHH
Confidence 58999999987764444332 12 67899999997544
No 443
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=63.22 E-value=4 Score=46.99 Aligned_cols=25 Identities=24% Similarity=0.231 Sum_probs=20.1
Q ss_pred CCeeEEeCCCCCChhHHHHHHHHHH
Q 042849 689 WPFTLVQGPPGTGKTHTVWGMLNVI 713 (1019)
Q Consensus 689 ~~fsLIQGPPGTGKTkTI~~LL~~L 713 (1019)
..+.+|-||+|+|||+|+..|...+
T Consensus 98 ~~vi~i~G~~GsGKTT~~~~LA~~l 122 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTAAKLALYY 122 (425)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3467777999999999998887643
No 444
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=63.21 E-value=3.7 Score=45.51 Aligned_cols=22 Identities=23% Similarity=0.375 Sum_probs=18.8
Q ss_pred CeeEEeCCCCCChhHHHHHHHH
Q 042849 690 PFTLVQGPPGTGKTHTVWGMLN 711 (1019)
Q Consensus 690 ~fsLIQGPPGTGKTkTI~~LL~ 711 (1019)
.+.+|-||+|+|||++...|..
T Consensus 11 ~~i~i~GptgsGKt~la~~La~ 32 (316)
T 3foz_A 11 KAIFLMGPTASGKTALAIELRK 32 (316)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCccCHHHHHHHHHH
Confidence 5778999999999998877764
No 445
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=63.15 E-value=3.9 Score=42.96 Aligned_cols=24 Identities=25% Similarity=0.319 Sum_probs=19.2
Q ss_pred CCCeeEEeCCCCCChhHHHHHHHH
Q 042849 688 PWPFTLVQGPPGTGKTHTVWGMLN 711 (1019)
Q Consensus 688 ~~~fsLIQGPPGTGKTkTI~~LL~ 711 (1019)
+..+..|.||.|.||||++..|..
T Consensus 31 ~Ge~~~l~G~nGsGKSTLl~~l~G 54 (240)
T 1ji0_A 31 RGQIVTLIGANGAGKTTTLSAIAG 54 (240)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 346899999999999987665543
No 446
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=63.12 E-value=3.8 Score=39.38 Aligned_cols=20 Identities=25% Similarity=0.428 Sum_probs=16.8
Q ss_pred eEEeCCCCCChhHHHHHHHH
Q 042849 692 TLVQGPPGTGKTHTVWGMLN 711 (1019)
Q Consensus 692 sLIQGPPGTGKTkTI~~LL~ 711 (1019)
.+|-|+||+|||+++..++.
T Consensus 13 i~v~G~~~~GKssli~~l~~ 32 (180)
T 2g6b_A 13 VMLVGDSGVGKTCLLVRFKD 32 (180)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHh
Confidence 58899999999998877654
No 447
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=63.07 E-value=3.9 Score=43.43 Aligned_cols=24 Identities=29% Similarity=0.437 Sum_probs=19.3
Q ss_pred CCCeeEEeCCCCCChhHHHHHHHH
Q 042849 688 PWPFTLVQGPPGTGKTHTVWGMLN 711 (1019)
Q Consensus 688 ~~~fsLIQGPPGTGKTkTI~~LL~ 711 (1019)
+..+..|-||.|+||||++..|..
T Consensus 32 ~Ge~~~liG~nGsGKSTLlk~l~G 55 (257)
T 1g6h_A 32 KGDVTLIIGPNGSGKSTLINVITG 55 (257)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 346899999999999987766543
No 448
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=63.01 E-value=3.8 Score=39.83 Aligned_cols=21 Identities=19% Similarity=0.275 Sum_probs=17.6
Q ss_pred eeEEeCCCCCChhHHHHHHHH
Q 042849 691 FTLVQGPPGTGKTHTVWGMLN 711 (1019)
Q Consensus 691 fsLIQGPPGTGKTkTI~~LL~ 711 (1019)
-.+|-|+||.|||+++..++.
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~ 29 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTG 29 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 478999999999998877653
No 449
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=63.00 E-value=3.8 Score=40.52 Aligned_cols=20 Identities=30% Similarity=0.508 Sum_probs=17.0
Q ss_pred eEEeCCCCCChhHHHHHHHH
Q 042849 692 TLVQGPPGTGKTHTVWGMLN 711 (1019)
Q Consensus 692 sLIQGPPGTGKTkTI~~LL~ 711 (1019)
.+|-|+||+|||+++..++.
T Consensus 11 i~v~G~~~~GKSsli~~l~~ 30 (207)
T 1vg8_A 11 VIILGDSGVGKTSLMNQYVN 30 (207)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHc
Confidence 58899999999998877764
No 450
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=62.92 E-value=2.9 Score=40.09 Aligned_cols=19 Identities=26% Similarity=0.476 Sum_probs=16.2
Q ss_pred eEEeCCCCCChhHHHHHHH
Q 042849 692 TLVQGPPGTGKTHTVWGML 710 (1019)
Q Consensus 692 sLIQGPPGTGKTkTI~~LL 710 (1019)
.+|-|+||+|||+++-.++
T Consensus 12 i~v~G~~~~GKssl~~~l~ 30 (181)
T 3tw8_B 12 LLIIGDSGVGKSSLLLRFA 30 (181)
T ss_dssp EEEECCTTSCHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHh
Confidence 5899999999999876665
No 451
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=62.72 E-value=3.9 Score=39.37 Aligned_cols=20 Identities=20% Similarity=0.237 Sum_probs=16.7
Q ss_pred eEEeCCCCCChhHHHHHHHH
Q 042849 692 TLVQGPPGTGKTHTVWGMLN 711 (1019)
Q Consensus 692 sLIQGPPGTGKTkTI~~LL~ 711 (1019)
.+|-|+||+|||+++..++.
T Consensus 11 i~v~G~~~~GKssl~~~~~~ 30 (182)
T 3bwd_D 11 CVTVGDGAVGKTCLLISYTS 30 (182)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 57889999999998876654
No 452
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=62.70 E-value=4.1 Score=42.48 Aligned_cols=24 Identities=25% Similarity=0.358 Sum_probs=19.2
Q ss_pred CCCeeEEeCCCCCChhHHHHHHHH
Q 042849 688 PWPFTLVQGPPGTGKTHTVWGMLN 711 (1019)
Q Consensus 688 ~~~fsLIQGPPGTGKTkTI~~LL~ 711 (1019)
+..+..|-||.|+||||++..|..
T Consensus 33 ~Ge~~~i~G~nGsGKSTLl~~l~G 56 (229)
T 2pze_A 33 RGQLLAVAGSTGAGKTSLLMMIMG 56 (229)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 346889999999999987766543
No 453
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=62.61 E-value=4.3 Score=43.54 Aligned_cols=24 Identities=25% Similarity=0.347 Sum_probs=19.3
Q ss_pred CCCeeEEeCCCCCChhHHHHHHHH
Q 042849 688 PWPFTLVQGPPGTGKTHTVWGMLN 711 (1019)
Q Consensus 688 ~~~fsLIQGPPGTGKTkTI~~LL~ 711 (1019)
...+..|-||.|+||||++..|..
T Consensus 49 ~Gei~~liG~NGsGKSTLlk~l~G 72 (263)
T 2olj_A 49 EGEVVVVIGPSGSGKSTFLRCLNL 72 (263)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCCEEEEEcCCCCcHHHHHHHHHc
Confidence 457899999999999987766543
No 454
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=62.52 E-value=3.9 Score=39.98 Aligned_cols=20 Identities=25% Similarity=0.449 Sum_probs=17.0
Q ss_pred eEEeCCCCCChhHHHHHHHH
Q 042849 692 TLVQGPPGTGKTHTVWGMLN 711 (1019)
Q Consensus 692 sLIQGPPGTGKTkTI~~LL~ 711 (1019)
.+|-|+||+|||+++..++.
T Consensus 19 i~v~G~~~~GKSsli~~l~~ 38 (196)
T 3tkl_A 19 LLLIGDSGVGKSCLLLRFAD 38 (196)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHc
Confidence 58999999999998777654
No 455
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=62.48 E-value=3.9 Score=39.39 Aligned_cols=20 Identities=25% Similarity=0.287 Sum_probs=16.6
Q ss_pred eEEeCCCCCChhHHHHHHHH
Q 042849 692 TLVQGPPGTGKTHTVWGMLN 711 (1019)
Q Consensus 692 sLIQGPPGTGKTkTI~~LL~ 711 (1019)
.+|-|+||+|||+++..++.
T Consensus 8 i~~~G~~~~GKssl~~~l~~ 27 (186)
T 1mh1_A 8 CVVVGDGAVGKTCLLISYTT 27 (186)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHc
Confidence 58899999999998766653
No 456
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=62.47 E-value=2.7 Score=59.18 Aligned_cols=20 Identities=45% Similarity=0.778 Sum_probs=16.8
Q ss_pred eEEeCCCCCChhHHHHHHHH
Q 042849 692 TLVQGPPGTGKTHTVWGMLN 711 (1019)
Q Consensus 692 sLIQGPPGTGKTkTI~~LL~ 711 (1019)
.|+.||||||||.++..++.
T Consensus 1307 vLL~GptGtGKT~li~~~L~ 1326 (3245)
T 3vkg_A 1307 LILCGPPGSGKTMTLTSTLR 1326 (3245)
T ss_dssp CEEESSTTSSHHHHHHHHGG
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 49999999999988766653
No 457
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=62.39 E-value=4.3 Score=42.54 Aligned_cols=23 Identities=26% Similarity=0.391 Sum_probs=18.8
Q ss_pred CCCeeEEeCCCCCChhHHHHHHH
Q 042849 688 PWPFTLVQGPPGTGKTHTVWGML 710 (1019)
Q Consensus 688 ~~~fsLIQGPPGTGKTkTI~~LL 710 (1019)
+..+..|-||-|+||||++..|.
T Consensus 30 ~Ge~~~iiG~nGsGKSTLl~~l~ 52 (235)
T 3tif_A 30 EGEFVSIMGPSGSGKSTMLNIIG 52 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHT
T ss_pred CCCEEEEECCCCCcHHHHHHHHh
Confidence 45789999999999998765554
No 458
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=62.27 E-value=4.2 Score=43.19 Aligned_cols=24 Identities=25% Similarity=0.346 Sum_probs=19.3
Q ss_pred CCCeeEEeCCCCCChhHHHHHHHH
Q 042849 688 PWPFTLVQGPPGTGKTHTVWGMLN 711 (1019)
Q Consensus 688 ~~~fsLIQGPPGTGKTkTI~~LL~ 711 (1019)
+..+..|-||.|+||||++..|..
T Consensus 25 ~Ge~~~liG~NGsGKSTLlk~l~G 48 (249)
T 2qi9_C 25 AGEILHLVGPNGAGKSTLLARMAG 48 (249)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCcHHHHHHHHhC
Confidence 346899999999999987766543
No 459
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=62.23 E-value=3.6 Score=39.82 Aligned_cols=20 Identities=35% Similarity=0.541 Sum_probs=16.9
Q ss_pred eEEeCCCCCChhHHHHHHHH
Q 042849 692 TLVQGPPGTGKTHTVWGMLN 711 (1019)
Q Consensus 692 sLIQGPPGTGKTkTI~~LL~ 711 (1019)
.+|-|+||.|||+++..++.
T Consensus 13 i~v~G~~~~GKSsli~~l~~ 32 (186)
T 2bme_A 13 FLVIGNAGTGKSCLLHQFIE 32 (186)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHc
Confidence 58889999999998877654
No 460
>3bs4_A Uncharacterized protein PH0321; structural genomics, unknown function, PSI-2, protein struct initiative; 1.60A {Pyrococcus horikoshii}
Probab=62.18 E-value=9.7 Score=40.95 Aligned_cols=25 Identities=4% Similarity=-0.045 Sum_probs=19.0
Q ss_pred CCcEEEEecCchhHHHHHHHHHhcCc
Q 042849 771 KPRMLVCAPSNAATDELLTRVLDRGF 796 (1019)
Q Consensus 771 k~RILVCAPSNaAVDEll~RLl~~Gi 796 (1019)
+.+.++.+ ......+++.+....|+
T Consensus 49 Ge~~~~~~-~~e~~~~l~~~~~~~G~ 73 (260)
T 3bs4_A 49 DNLVGMFS-ISYPLQLIIRILSRFGV 73 (260)
T ss_dssp TCEEEEEE-CSSCHHHHHHHHHHTTC
T ss_pred CCcEEEEE-EeCCHHHHHHHHHHcCC
Confidence 56788888 57788889888866554
No 461
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=61.95 E-value=3.4 Score=39.16 Aligned_cols=19 Identities=32% Similarity=0.452 Sum_probs=15.8
Q ss_pred eEEeCCCCCChhHHHHHHH
Q 042849 692 TLVQGPPGTGKTHTVWGML 710 (1019)
Q Consensus 692 sLIQGPPGTGKTkTI~~LL 710 (1019)
.+|-|+||+|||+++..++
T Consensus 5 i~~vG~~~~GKSsli~~l~ 23 (166)
T 3q72_A 5 VLLLGAPGVGKSALARIFG 23 (166)
T ss_dssp EEEEESTTSSHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHc
Confidence 5889999999998776654
No 462
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=61.94 E-value=4.4 Score=43.53 Aligned_cols=24 Identities=33% Similarity=0.476 Sum_probs=19.4
Q ss_pred CCCeeEEeCCCCCChhHHHHHHHH
Q 042849 688 PWPFTLVQGPPGTGKTHTVWGMLN 711 (1019)
Q Consensus 688 ~~~fsLIQGPPGTGKTkTI~~LL~ 711 (1019)
+..+..|-||.|+||||++..|..
T Consensus 44 ~Ge~~~i~G~nGsGKSTLlk~l~G 67 (271)
T 2ixe_A 44 PGKVTALVGPNGSGKSTVAALLQN 67 (271)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 457899999999999987666543
No 463
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=61.92 E-value=4.3 Score=42.98 Aligned_cols=24 Identities=17% Similarity=0.130 Sum_probs=19.3
Q ss_pred CCCeeEEeCCCCCChhHHHHHHHH
Q 042849 688 PWPFTLVQGPPGTGKTHTVWGMLN 711 (1019)
Q Consensus 688 ~~~fsLIQGPPGTGKTkTI~~LL~ 711 (1019)
+..+..|-||.|+||||++..|..
T Consensus 34 ~Ge~~~i~G~nGsGKSTLl~~l~G 57 (247)
T 2ff7_A 34 QGEVIGIVGRSGSGKSTLTKLIQR 57 (247)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 346899999999999987766543
No 464
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=61.87 E-value=4.3 Score=39.50 Aligned_cols=20 Identities=25% Similarity=0.503 Sum_probs=17.0
Q ss_pred eEEeCCCCCChhHHHHHHHH
Q 042849 692 TLVQGPPGTGKTHTVWGMLN 711 (1019)
Q Consensus 692 sLIQGPPGTGKTkTI~~LL~ 711 (1019)
.+|-|+||+|||+++..++.
T Consensus 18 i~v~G~~~~GKssli~~l~~ 37 (195)
T 1x3s_A 18 ILIIGESGVGKSSLLLRFTD 37 (195)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHc
Confidence 68999999999998877754
No 465
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=61.79 E-value=3.3 Score=40.17 Aligned_cols=20 Identities=15% Similarity=0.441 Sum_probs=16.6
Q ss_pred eEEeCCCCCChhHHHHHHHH
Q 042849 692 TLVQGPPGTGKTHTVWGMLN 711 (1019)
Q Consensus 692 sLIQGPPGTGKTkTI~~LL~ 711 (1019)
.+|-|+||.|||+++..++.
T Consensus 4 i~v~G~~~~GKSsli~~l~~ 23 (190)
T 2cxx_A 4 IIFAGRSNVGKSTLIYRLTG 23 (190)
T ss_dssp EEEEEBTTSSHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHhC
Confidence 47899999999998777653
No 466
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=61.62 E-value=7.3 Score=46.14 Aligned_cols=25 Identities=24% Similarity=0.344 Sum_probs=21.3
Q ss_pred CCeeEEeCCCCCChhHHHHHHHHHH
Q 042849 689 WPFTLVQGPPGTGKTHTVWGMLNVI 713 (1019)
Q Consensus 689 ~~fsLIQGPPGTGKTkTI~~LL~~L 713 (1019)
..+.++.|.+|+|||++.+++...+
T Consensus 8 ~~i~~~sgkGGvGKTT~a~~lA~~l 32 (589)
T 1ihu_A 8 PPYLFFTGKGGVGKTSISCATAIRL 32 (589)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CEEEEEeCCCcCHHHHHHHHHHHHH
Confidence 4688999999999999998887643
No 467
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=61.55 E-value=4.5 Score=43.23 Aligned_cols=24 Identities=25% Similarity=0.267 Sum_probs=19.3
Q ss_pred CCCeeEEeCCCCCChhHHHHHHHH
Q 042849 688 PWPFTLVQGPPGTGKTHTVWGMLN 711 (1019)
Q Consensus 688 ~~~fsLIQGPPGTGKTkTI~~LL~ 711 (1019)
+..+..|-||.|+||||++..|..
T Consensus 32 ~Ge~~~liG~nGsGKSTLl~~i~G 55 (266)
T 2yz2_A 32 EGECLLVAGNTGSGKSTLLQIVAG 55 (266)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCcHHHHHHHHhC
Confidence 456899999999999987766543
No 468
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=61.48 E-value=3.2 Score=45.21 Aligned_cols=24 Identities=21% Similarity=0.421 Sum_probs=20.6
Q ss_pred CCCeeEEeCCCCCChhHHHHHHHH
Q 042849 688 PWPFTLVQGPPGTGKTHTVWGMLN 711 (1019)
Q Consensus 688 ~~~fsLIQGPPGTGKTkTI~~LL~ 711 (1019)
+.+|..|-|+||+|||+++-.|+.
T Consensus 9 ~~g~v~ivG~~nvGKSTLin~l~g 32 (308)
T 3iev_A 9 KVGYVAIVGKPNVGKSTLLNNLLG 32 (308)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHT
T ss_pred CCCEEEEECCCCCcHHHHHHHHhC
Confidence 457999999999999998877764
No 469
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=61.30 E-value=4 Score=39.48 Aligned_cols=20 Identities=25% Similarity=0.401 Sum_probs=16.8
Q ss_pred eEEeCCCCCChhHHHHHHHH
Q 042849 692 TLVQGPPGTGKTHTVWGMLN 711 (1019)
Q Consensus 692 sLIQGPPGTGKTkTI~~LL~ 711 (1019)
.+|-|+||+|||+++..++.
T Consensus 21 i~v~G~~~~GKSsl~~~l~~ 40 (183)
T 3kkq_A 21 LVVVGDGGVGKSALTIQFFQ 40 (183)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 58999999999998777653
No 470
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=61.21 E-value=2.5 Score=44.52 Aligned_cols=21 Identities=19% Similarity=0.116 Sum_probs=16.8
Q ss_pred CeeEEeCCCCCChhHHHHHHH
Q 042849 690 PFTLVQGPPGTGKTHTVWGML 710 (1019)
Q Consensus 690 ~fsLIQGPPGTGKTkTI~~LL 710 (1019)
.|-+|-|++|+||||.+..|.
T Consensus 25 ~~I~ieG~~GsGKST~~~~L~ 45 (263)
T 1p5z_B 25 KKISIEGNIAAGKSTFVNILK 45 (263)
T ss_dssp EEEEEECSTTSSHHHHHTTTG
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 478999999999998665443
No 471
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=61.13 E-value=4.2 Score=40.05 Aligned_cols=20 Identities=20% Similarity=0.425 Sum_probs=16.9
Q ss_pred eEEeCCCCCChhHHHHHHHH
Q 042849 692 TLVQGPPGTGKTHTVWGMLN 711 (1019)
Q Consensus 692 sLIQGPPGTGKTkTI~~LL~ 711 (1019)
.+|-|+||.|||+++..++.
T Consensus 17 i~v~G~~~~GKSsli~~l~~ 36 (206)
T 2bov_A 17 VIMVGSGGVGKSALTLQFMY 36 (206)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 57889999999998877664
No 472
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=61.13 E-value=4.2 Score=43.62 Aligned_cols=21 Identities=29% Similarity=0.465 Sum_probs=17.9
Q ss_pred eEEeCCCCCChhHHHHHHHHH
Q 042849 692 TLVQGPPGTGKTHTVWGMLNV 712 (1019)
Q Consensus 692 sLIQGPPGTGKTkTI~~LL~~ 712 (1019)
..|-||+|.||||++-.|...
T Consensus 5 v~lvG~nGaGKSTLln~L~g~ 25 (270)
T 3sop_A 5 IMVVGQSGLGKSTLVNTLFKS 25 (270)
T ss_dssp EEEEESSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 468899999999998887763
No 473
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=61.06 E-value=4.3 Score=39.91 Aligned_cols=20 Identities=20% Similarity=0.434 Sum_probs=17.0
Q ss_pred eEEeCCCCCChhHHHHHHHH
Q 042849 692 TLVQGPPGTGKTHTVWGMLN 711 (1019)
Q Consensus 692 sLIQGPPGTGKTkTI~~LL~ 711 (1019)
.+|-|+||+|||+++..++.
T Consensus 24 i~v~G~~~~GKSsli~~l~~ 43 (191)
T 2a5j_A 24 YIIIGDTGVGKSCLLLQFTD 43 (191)
T ss_dssp EEEESSTTSSHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHhc
Confidence 58899999999998877664
No 474
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=61.02 E-value=3.6 Score=45.02 Aligned_cols=22 Identities=41% Similarity=0.549 Sum_probs=19.4
Q ss_pred CeeEEeCCCCCChhHHHHHHHH
Q 042849 690 PFTLVQGPPGTGKTHTVWGMLN 711 (1019)
Q Consensus 690 ~fsLIQGPPGTGKTkTI~~LL~ 711 (1019)
++++|-||-|.||||++..|+.
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~ 26 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILN 26 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHH
T ss_pred cEEEEEecCCCCHHHHHHHHHh
Confidence 7899999999999998877764
No 475
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=61.00 E-value=3.5 Score=40.10 Aligned_cols=22 Identities=18% Similarity=0.237 Sum_probs=17.8
Q ss_pred CeeEEeCCCCCChhHHHHHHHH
Q 042849 690 PFTLVQGPPGTGKTHTVWGMLN 711 (1019)
Q Consensus 690 ~fsLIQGPPGTGKTkTI~~LL~ 711 (1019)
.-.+|-|+||.|||+++..++.
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~ 45 (195)
T 3pqc_A 24 GEVAFVGRSNVGKSSLLNALFN 45 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 3468899999999998877653
No 476
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=60.97 E-value=4.3 Score=55.06 Aligned_cols=25 Identities=20% Similarity=0.283 Sum_probs=21.5
Q ss_pred CCCeeEEeCCCCCChhHHHHHHHHH
Q 042849 688 PWPFTLVQGPPGTGKTHTVWGMLNV 712 (1019)
Q Consensus 688 ~~~fsLIQGPPGTGKTkTI~~LL~~ 712 (1019)
+..+++|.||||+|||++...++..
T Consensus 382 ~G~lilI~G~pGsGKTtLaLqia~~ 406 (2050)
T 3cmu_A 382 MGRIVEIYGPESSGKTTLTLQVIAA 406 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 4579999999999999998888754
No 477
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=60.90 E-value=2.5 Score=42.12 Aligned_cols=21 Identities=14% Similarity=0.155 Sum_probs=17.3
Q ss_pred CeeEEeCCCCCChhHHHHHHH
Q 042849 690 PFTLVQGPPGTGKTHTVWGML 710 (1019)
Q Consensus 690 ~fsLIQGPPGTGKTkTI~~LL 710 (1019)
....|-||||.|||+++..|+
T Consensus 27 ~~v~lvG~~g~GKSTLl~~l~ 47 (210)
T 1pui_A 27 IEVAFAGRSNAGKSSALNTLT 47 (210)
T ss_dssp EEEEEEECTTSSHHHHHTTTC
T ss_pred cEEEEECCCCCCHHHHHHHHh
Confidence 458999999999998776554
No 478
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=60.84 E-value=4.4 Score=39.93 Aligned_cols=20 Identities=25% Similarity=0.378 Sum_probs=17.2
Q ss_pred eEEeCCCCCChhHHHHHHHH
Q 042849 692 TLVQGPPGTGKTHTVWGMLN 711 (1019)
Q Consensus 692 sLIQGPPGTGKTkTI~~LL~ 711 (1019)
.+|-|+||+|||+++..++.
T Consensus 24 i~vvG~~~vGKTsLi~~l~~ 43 (187)
T 3c5c_A 24 LAILGRRGAGKSALTVKFLT 43 (187)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHh
Confidence 58999999999998877764
No 479
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=60.81 E-value=4.6 Score=43.60 Aligned_cols=24 Identities=21% Similarity=0.206 Sum_probs=19.6
Q ss_pred CCCeeEEeCCCCCChhHHHHHHHH
Q 042849 688 PWPFTLVQGPPGTGKTHTVWGMLN 711 (1019)
Q Consensus 688 ~~~fsLIQGPPGTGKTkTI~~LL~ 711 (1019)
+..+..|-||.|.||||++..|..
T Consensus 33 ~Ge~~~iiGpnGsGKSTLl~~l~G 56 (275)
T 3gfo_A 33 RGEVTAILGGNGVGKSTLFQNFNG 56 (275)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHc
Confidence 457899999999999988766654
No 480
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=60.77 E-value=4.2 Score=41.42 Aligned_cols=21 Identities=29% Similarity=0.185 Sum_probs=16.0
Q ss_pred CeeEEeCCCCCChhHHHHHHH
Q 042849 690 PFTLVQGPPGTGKTHTVWGML 710 (1019)
Q Consensus 690 ~fsLIQGPPGTGKTkTI~~LL 710 (1019)
-+-.|-|+||+||||+...|.
T Consensus 13 ~iIgltG~~GSGKSTva~~L~ 33 (192)
T 2grj_A 13 MVIGVTGKIGTGKSTVCEILK 33 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 467899999999996554443
No 481
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2
Probab=60.70 E-value=3.7 Score=45.43 Aligned_cols=21 Identities=29% Similarity=0.521 Sum_probs=18.0
Q ss_pred eeEEeCCCCCChhHHHHHHHH
Q 042849 691 FTLVQGPPGTGKTHTVWGMLN 711 (1019)
Q Consensus 691 fsLIQGPPGTGKTkTI~~LL~ 711 (1019)
-.||.||+|+|||++...++.
T Consensus 149 gvli~G~sG~GKStlal~l~~ 169 (312)
T 1knx_A 149 GVLLTGRSGIGKSECALDLIN 169 (312)
T ss_dssp EEEEEESSSSSHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 379999999999999877764
No 482
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=60.60 E-value=4.1 Score=42.05 Aligned_cols=20 Identities=30% Similarity=0.471 Sum_probs=17.2
Q ss_pred eEEeCCCCCChhHHHHHHHH
Q 042849 692 TLVQGPPGTGKTHTVWGMLN 711 (1019)
Q Consensus 692 sLIQGPPGTGKTkTI~~LL~ 711 (1019)
.+|-|+||+|||+++..|+.
T Consensus 32 i~lvG~~g~GKStlin~l~g 51 (239)
T 3lxx_A 32 IVLVGKTGAGKSATGNSILG 51 (239)
T ss_dssp EEEECCTTSSHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHcC
Confidence 58999999999998877764
No 483
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=60.57 E-value=3.6 Score=43.56 Aligned_cols=20 Identities=25% Similarity=0.386 Sum_probs=17.2
Q ss_pred eEEeCCCCCChhHHHHHHHH
Q 042849 692 TLVQGPPGTGKTHTVWGMLN 711 (1019)
Q Consensus 692 sLIQGPPGTGKTkTI~~LL~ 711 (1019)
..|-|+||+|||+++-.|+.
T Consensus 6 i~lvG~~g~GKTTL~n~l~g 25 (271)
T 3k53_A 6 VALVGNPNVGKTTIFNALTG 25 (271)
T ss_dssp EEEEECSSSSHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHhC
Confidence 58899999999998877764
No 484
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=60.43 E-value=5.5 Score=45.69 Aligned_cols=23 Identities=26% Similarity=0.385 Sum_probs=18.8
Q ss_pred CeeEEeCCCCCChhHHHHHHHHH
Q 042849 690 PFTLVQGPPGTGKTHTVWGMLNV 712 (1019)
Q Consensus 690 ~fsLIQGPPGTGKTkTI~~LL~~ 712 (1019)
...+|.||||+|||+++..|...
T Consensus 175 Qr~~IvG~sG~GKTtLl~~Iar~ 197 (422)
T 3ice_A 175 QRGLIVAPPKAGKTMLLQNIAQS 197 (422)
T ss_dssp CEEEEECCSSSSHHHHHHHHHHH
T ss_pred cEEEEecCCCCChhHHHHHHHHH
Confidence 56899999999999887766553
No 485
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=60.38 E-value=4.7 Score=42.86 Aligned_cols=24 Identities=25% Similarity=0.220 Sum_probs=19.1
Q ss_pred CCCeeEEeCCCCCChhHHHHHHHH
Q 042849 688 PWPFTLVQGPPGTGKTHTVWGMLN 711 (1019)
Q Consensus 688 ~~~fsLIQGPPGTGKTkTI~~LL~ 711 (1019)
+..+..|-||.|+||||++..|..
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~l~G 53 (253)
T 2nq2_C 30 KGDILAVLGQNGCGKSTLLDLLLG 53 (253)
T ss_dssp TTCEEEEECCSSSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 346899999999999987665543
No 486
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=60.36 E-value=4.7 Score=40.02 Aligned_cols=20 Identities=25% Similarity=0.458 Sum_probs=17.0
Q ss_pred eEEeCCCCCChhHHHHHHHH
Q 042849 692 TLVQGPPGTGKTHTVWGMLN 711 (1019)
Q Consensus 692 sLIQGPPGTGKTkTI~~LL~ 711 (1019)
.+|-|+||+|||+++..++.
T Consensus 23 i~v~G~~~~GKSsli~~l~~ 42 (213)
T 3cph_A 23 ILLIGDSGVGKSCLLVRFVE 42 (213)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 68999999999998877654
No 487
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=60.33 E-value=4.8 Score=44.90 Aligned_cols=23 Identities=17% Similarity=0.241 Sum_probs=19.2
Q ss_pred CCeeEEeCCCCCChhHHHHHHHH
Q 042849 689 WPFTLVQGPPGTGKTHTVWGMLN 711 (1019)
Q Consensus 689 ~~fsLIQGPPGTGKTkTI~~LL~ 711 (1019)
.++.+|.||-|.|||..+-+|-.
T Consensus 25 ~gl~vi~G~NGaGKT~ileAI~~ 47 (371)
T 3auy_A 25 KGIVAIIGENGSGKSSIFEAVFF 47 (371)
T ss_dssp SEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 47999999999999987666654
No 488
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=60.23 E-value=4.3 Score=43.96 Aligned_cols=22 Identities=23% Similarity=0.403 Sum_probs=14.9
Q ss_pred CeeEEeCCCCCChhHHHHHHHH
Q 042849 690 PFTLVQGPPGTGKTHTVWGMLN 711 (1019)
Q Consensus 690 ~fsLIQGPPGTGKTkTI~~LL~ 711 (1019)
.+..|-||+|+||||+...|..
T Consensus 6 ~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 6 PIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp CEEEEESCC---CCTHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5788999999999987766554
No 489
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=60.09 E-value=4.2 Score=40.09 Aligned_cols=20 Identities=25% Similarity=0.456 Sum_probs=17.0
Q ss_pred eEEeCCCCCChhHHHHHHHH
Q 042849 692 TLVQGPPGTGKTHTVWGMLN 711 (1019)
Q Consensus 692 sLIQGPPGTGKTkTI~~LL~ 711 (1019)
.+|-|+||+|||+++..++.
T Consensus 26 i~vvG~~~~GKSsli~~l~~ 45 (192)
T 2fg5_A 26 VCLLGDTGVGKSSIVCRFVQ 45 (192)
T ss_dssp EEEEECTTSSHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHhc
Confidence 58899999999998877764
No 490
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=60.00 E-value=4.3 Score=40.15 Aligned_cols=20 Identities=25% Similarity=0.438 Sum_probs=16.5
Q ss_pred eEEeCCCCCChhHHHHHHHH
Q 042849 692 TLVQGPPGTGKTHTVWGMLN 711 (1019)
Q Consensus 692 sLIQGPPGTGKTkTI~~LL~ 711 (1019)
.+|-|+||+|||+++..++.
T Consensus 11 i~v~G~~~~GKSsli~~l~~ 30 (203)
T 1zbd_A 11 ILIIGNSSVGKTSFLFRYAD 30 (203)
T ss_dssp EEEECSTTSSHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 58899999999988766653
No 491
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=59.93 E-value=4.6 Score=39.83 Aligned_cols=20 Identities=30% Similarity=0.430 Sum_probs=16.9
Q ss_pred eEEeCCCCCChhHHHHHHHH
Q 042849 692 TLVQGPPGTGKTHTVWGMLN 711 (1019)
Q Consensus 692 sLIQGPPGTGKTkTI~~LL~ 711 (1019)
.+|-|+||+|||+++..++.
T Consensus 31 i~v~G~~~vGKSsli~~l~~ 50 (196)
T 2atv_A 31 LAIFGRAGVGKSALVVRFLT 50 (196)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 58899999999998777654
No 492
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=59.74 E-value=4.1 Score=44.19 Aligned_cols=23 Identities=26% Similarity=0.463 Sum_probs=19.6
Q ss_pred CCeeEEeCCCCCChhHHHHHHHH
Q 042849 689 WPFTLVQGPPGTGKTHTVWGMLN 711 (1019)
Q Consensus 689 ~~fsLIQGPPGTGKTkTI~~LL~ 711 (1019)
.++..|-|+||.|||+++-.|+.
T Consensus 8 ~~~VaIvG~~nvGKSTLln~L~g 30 (301)
T 1ega_A 8 CGFIAIVGRPNVGKSTLLNKLLG 30 (301)
T ss_dssp EEEEEEECSSSSSHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHC
Confidence 36889999999999998877764
No 493
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=59.69 E-value=4.6 Score=39.62 Aligned_cols=20 Identities=25% Similarity=0.132 Sum_probs=16.9
Q ss_pred eEEeCCCCCChhHHHHHHHH
Q 042849 692 TLVQGPPGTGKTHTVWGMLN 711 (1019)
Q Consensus 692 sLIQGPPGTGKTkTI~~LL~ 711 (1019)
.+|-|+||+|||+++..++.
T Consensus 25 i~v~G~~~~GKSsli~~l~~ 44 (188)
T 1zd9_A 25 LTLVGLQYSGKTTFVNVIAS 44 (188)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHc
Confidence 58999999999998777654
No 494
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=59.64 E-value=4.1 Score=39.35 Aligned_cols=20 Identities=15% Similarity=0.235 Sum_probs=17.1
Q ss_pred eEEeCCCCCChhHHHHHHHH
Q 042849 692 TLVQGPPGTGKTHTVWGMLN 711 (1019)
Q Consensus 692 sLIQGPPGTGKTkTI~~LL~ 711 (1019)
.+|-|+||.|||+++..++.
T Consensus 9 i~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 9 IAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHc
Confidence 68999999999998777763
No 495
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=59.60 E-value=4.7 Score=39.99 Aligned_cols=20 Identities=15% Similarity=0.340 Sum_probs=17.1
Q ss_pred eEEeCCCCCChhHHHHHHHH
Q 042849 692 TLVQGPPGTGKTHTVWGMLN 711 (1019)
Q Consensus 692 sLIQGPPGTGKTkTI~~LL~ 711 (1019)
.+|-|+||+|||+++..++.
T Consensus 31 i~v~G~~~~GKSsli~~l~~ 50 (199)
T 2p5s_A 31 IVLAGDAAVGKSSFLMRLCK 50 (199)
T ss_dssp EEEESSTTSSHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHh
Confidence 58899999999998877764
No 496
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=59.58 E-value=4.9 Score=43.39 Aligned_cols=24 Identities=21% Similarity=0.076 Sum_probs=19.3
Q ss_pred CCCeeEEeCCCCCChhHHHHHHHH
Q 042849 688 PWPFTLVQGPPGTGKTHTVWGMLN 711 (1019)
Q Consensus 688 ~~~fsLIQGPPGTGKTkTI~~LL~ 711 (1019)
+..+..|-||.|+||||++..|..
T Consensus 46 ~Ge~~~liG~NGsGKSTLlk~l~G 69 (279)
T 2ihy_A 46 KGDKWILYGLNGAGKTTLLNILNA 69 (279)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCcHHHHHHHHhC
Confidence 346899999999999987766543
No 497
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=59.42 E-value=4 Score=45.36 Aligned_cols=22 Identities=18% Similarity=0.182 Sum_probs=18.4
Q ss_pred CeeEEeCCCCCChhHHHHHHHH
Q 042849 690 PFTLVQGPPGTGKTHTVWGMLN 711 (1019)
Q Consensus 690 ~fsLIQGPPGTGKTkTI~~LL~ 711 (1019)
....|-||+|+||||++..|..
T Consensus 171 ~k~~IvG~nGsGKSTLlk~L~g 192 (365)
T 1lw7_A 171 KTVAILGGESSGKSVLVNKLAA 192 (365)
T ss_dssp EEEEEECCTTSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4679999999999988777665
No 498
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=59.41 E-value=4.8 Score=39.38 Aligned_cols=20 Identities=25% Similarity=0.385 Sum_probs=16.8
Q ss_pred eEEeCCCCCChhHHHHHHHH
Q 042849 692 TLVQGPPGTGKTHTVWGMLN 711 (1019)
Q Consensus 692 sLIQGPPGTGKTkTI~~LL~ 711 (1019)
.+|-|+||+|||+++..++.
T Consensus 23 i~v~G~~~~GKSsli~~l~~ 42 (189)
T 1z06_A 23 IIVIGDSNVGKTCLTYRFCA 42 (189)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHc
Confidence 58899999999998777654
No 499
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=59.31 E-value=4.7 Score=40.31 Aligned_cols=21 Identities=29% Similarity=0.256 Sum_probs=17.6
Q ss_pred eeEEeCCCCCChhHHHHHHHH
Q 042849 691 FTLVQGPPGTGKTHTVWGMLN 711 (1019)
Q Consensus 691 fsLIQGPPGTGKTkTI~~LL~ 711 (1019)
-.+|-|+||+|||+++..++.
T Consensus 9 ki~vvG~~~~GKTsli~~l~~ 29 (214)
T 2fh5_B 9 AVLFVGLCDSGKTLLFVRLLT 29 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 468899999999998877764
No 500
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=59.24 E-value=4.4 Score=39.64 Aligned_cols=20 Identities=30% Similarity=0.504 Sum_probs=17.0
Q ss_pred eEEeCCCCCChhHHHHHHHH
Q 042849 692 TLVQGPPGTGKTHTVWGMLN 711 (1019)
Q Consensus 692 sLIQGPPGTGKTkTI~~LL~ 711 (1019)
.+|-|+||.|||+++..++.
T Consensus 11 i~vvG~~~~GKSsli~~l~~ 30 (199)
T 2gf0_A 11 VVVFGAGGVGKSSLVLRFVK 30 (199)
T ss_dssp EEEEECTTSSHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHc
Confidence 58889999999998877764
Done!