Query 042851
Match_columns 453
No_of_seqs 271 out of 1763
Neff 6.3
Searched_HMMs 29240
Date Mon Mar 25 17:52:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042851.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042851hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3v5u_A Uncharacterized membran 100.0 1.7E-47 6E-52 385.2 16.9 264 4-446 36-301 (320)
2 3v5u_A Uncharacterized membran 99.9 2.2E-24 7.4E-29 217.1 10.2 139 285-449 8-146 (320)
3 3rb5_A Na/Ca exchange protein; 29.9 11 0.00038 36.8 0.0 15 226-240 284-298 (298)
4 2zjs_Y Preprotein translocase 8.3 8.7E+02 0.03 24.6 7.9 52 287-339 155-206 (434)
5 2l2t_A Receptor tyrosine-prote 6.4 4.2E+02 0.014 18.3 3.0 9 410-418 33-41 (44)
6 2ks1_B Epidermal growth factor 5.5 5.1E+02 0.018 17.8 3.0 7 411-417 35-41 (44)
7 2jwa_A Receptor tyrosine-prote 5.4 3.1E+02 0.011 19.0 1.9 10 409-418 33-42 (44)
8 3zux_A Transporter, ASBTNM; tr 5.3 1.7E+03 0.059 21.0 8.1 54 307-362 93-147 (332)
9 2l34_A TYRO protein tyrosine k 4.8 3.2E+02 0.011 17.7 1.5 24 41-64 3-26 (33)
10 1pfi_A Major coat protein of P 4.0 3.8E+02 0.013 18.4 1.4 29 341-372 13-41 (46)
No 1
>3v5u_A Uncharacterized membrane protein MJ0091; lipid cubic phase, cation protein complex, sodium,calcium EX membrane protein; HET: OLC MYS 1PE; 1.90A {Methanocaldococcus jannaschii} PDB: 3v5s_A*
Probab=100.00 E-value=1.7e-47 Score=385.20 Aligned_cols=264 Identities=19% Similarity=0.217 Sum_probs=210.7
Q ss_pred cCcccccceeeeccCChhHHHHHHHHHHhhccccCCCCccchhhhhhhhhhhHhHhhhheecccccccccccccchhhHH
Q 042851 4 CGITPSDIALLAFGTSFPQISLATIDAIRSIGNLYAGGLGPGTLVGSAAFDLFPIHAVCVVVPKAGELKKISDIGVWLVE 83 (453)
Q Consensus 4 ~~~~VaGlTivA~GTSaPEL~vSiia~~~~~~~~~~~digvGnIVGS~IfNillIlGl~al~~p~~~~~~~~~~~~~~~~ 83 (453)
.||.++|+|++|+|||+||+++|+.|+.+ +++|+++||++|||+||+++|+|+|+++.|... ++..
T Consensus 36 is~~viGltiva~GTSlPEl~vsi~A~~~-----g~~diaiGnivGSni~nillvlG~~~li~p~~v-~~~~-------- 101 (320)
T 3v5u_A 36 VSNFVIGATVMAIGTSLPEILTSAYASYM-----HAPGISIGNAIGSCICNIGLVLGLSAIISPIIV-DKNL-------- 101 (320)
T ss_dssp BCHHHHHHTHHHHHHHHHHHHHHHHHHHT-----TCHHHHHHHHHHHHHHHHHTHHHHHHHHSCBCC-CHHH--------
T ss_pred cCHHHHHHHHHHHHcccHHHHHHHHHHhC-----CCCceeeeeecchHHHHHHHHHHHHHHHccccc-cHHH--------
Confidence 47999999999999999999999999997 699999999999999999999999999999754 2221
Q ss_pred HHHHHHHHHH-HHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHhhccCccccccccccCCCCCCCccccCCCCCCCCc
Q 042851 84 LFWSFWAYVW-LYIILEVWTPNVITFWEALLTVLQYGLLLIHAYAQDKRWPYLSLPIARTERPEDWVPQETTSCKDENCD 162 (453)
Q Consensus 84 ~~~~~~~y~~-~~ill~~~~dg~i~~~Eg~ill~~~~~yl~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (453)
.+|...++. ..+++.+..|+ ++|+||++++++|..|+.+.++..+ +++
T Consensus 102 -~~d~~~~l~~~~~l~~~~~~g-is~~~g~~Ll~~Y~~yl~~~~~~~~-----------~~~------------------ 150 (320)
T 3v5u_A 102 -QKNILVYLLFVIFAAVIGIDG-FSWIDGVVLLILFIIYLRWTVKNGS-----------AEI------------------ 150 (320)
T ss_dssp -HHHHHHHHHHHHHHHHHTTTC-BCHHHHHHHHHHHHHHHHHHHHHTB-----------C--------------------
T ss_pred -HHHHHHHHHHHHHHHHHHHcc-cHHHHHHHHHHHHHHHHHHHHHhcc-----------ccc------------------
Confidence 234433333 22334455788 9999999999999999999876421 000
Q ss_pred cccccccccccccCcccceeeeeccCCCCcccCCccccCCCCcchhhhhhhhhhhhcccCCccccchhhhhhhhhhcccC
Q 042851 163 YDECSEILQLGEDENRGVVDIFSIHSPNGAVTSPLYQKVPGSEDVAEISKESFREEINSELPHVHALWKQQFVDSIALES 242 (453)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~a~~~~~ 242 (453)
+ ++++ ++. .+.|
T Consensus 151 --------------------------~------------------~~~~----------~~~--~~~~------------ 162 (320)
T 3v5u_A 151 --------------------------E------------------ENND----------KNN--PSVV------------ 162 (320)
T ss_dssp -----------------------------------------------------------CCC--HHHH------------
T ss_pred --------------------------c------------------cccc----------ccc--ccHH------------
Confidence 0 0000 000 0001
Q ss_pred chhhhhhhhhHHHHHHHHHHhhhhhhhheeecCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhhhhh
Q 042851 243 PESRKMNNIYLRLARIFWQSLLVPWRVLFAFVPPYHIAHGWIAFICSLIFISGIAYIVTKLTDIISCVTGINAYVIAFTA 322 (453)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~l~~p~~~~~~~vpp~~~~~~~~~f~~~i~~i~~~s~~lv~~a~~ia~~~gis~~viGlTi 322 (453)
+...+ ++.+++.+..++++++++++.+++.+|+||.++|+|+
T Consensus 163 -------------~~~~~-------------------------l~~~l~~l~~~a~~lv~~~~~ia~~~gis~~~iGltl 204 (320)
T 3v5u_A 163 -------------FSLVL-------------------------LIIGLIGVLVGAELFVDGAKKIALALDISDKVIGFTL 204 (320)
T ss_dssp -------------HHHHH-------------------------HHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHT
T ss_pred -------------HHHHH-------------------------HHHHHHHHHHHHHhccccHHHHHHHhCCchHHHHHHH
Confidence 22222 4467888889999999999999999999999999999
Q ss_pred hhcccChhHHHHHHHHHHhcCCCCceeehhccchhhHHHhhhhHHHHHHhhhccccccccEEEecCCCchhHHHHHHHHH
Q 042851 323 LASGTSWPDLVASKIAAERQITADSAIANITCSNSVNIYVGIGIPWLIDTAYNFIVYKEPLRVQNAEGLSFSLLVFFCTS 402 (453)
Q Consensus 323 vA~GTSlPEl~tSi~aa~~~g~~diAigNiiGSNifNillvLGl~~li~~~~~~~~~~~pi~v~~~~~l~~~~~~l~~~~ 402 (453)
+|+|||+||+++|+.++ |||+.|+|+||++|||+||+++++|+++++ .|++++ .+|.+++++++
T Consensus 205 va~gtslPE~~~sv~aa-~~g~~~laig~iiGS~ifn~~~v~g~~~li----------~p~~~~-----~~d~~~~l~~~ 268 (320)
T 3v5u_A 205 VAFGTSLPELMVSLAAA-KRNLGGMVLGNVIGSNIADIGGALAVGSLF----------MHLPAE-----NVQMAVLVIMS 268 (320)
T ss_dssp HHHHHTHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHTHHHHHHHH----------SCBCCC-----HHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHH-HcCCCcHHHHHHHhHHHHHHHHHHHHHHhh----------ccccch-----HHHHHHHHHHH
Confidence 99999999999999999 899999999999999999999999999999 566553 57888888877
Q ss_pred HHHHHHHHHhCCcccccccccchhhHHHHHHHHHHHHH-HHHHHH
Q 042851 403 VGCIAVLVLRRLTLGAELGGPKLWAWVTSVYFMLLWII-FVVLSS 446 (453)
Q Consensus 403 ~l~~~~~~~~~~~i~r~~G~~~~~~~~~~~~ll~~Y~~-yl~~~~ 446 (453)
+++.. + .+++|++|++| ++++.+|+. |+.+..
T Consensus 269 ~ll~~-~-~~~~~i~~~eG----------~~ll~~Y~~~y~~~~~ 301 (320)
T 3v5u_A 269 LLLYL-F-AKYSKIGRWQG----------ILFLALYIIAIASLRM 301 (320)
T ss_dssp HHHHH-H-HHHSCBSHHHH----------HHHHHHHHHHHHHSCS
T ss_pred HHHHH-H-HhCCcCcHHHH----------HHHHHHHHHHHHHHHH
Confidence 76654 3 57889999999 799999999 987543
No 2
>3v5u_A Uncharacterized membrane protein MJ0091; lipid cubic phase, cation protein complex, sodium,calcium EX membrane protein; HET: OLC MYS 1PE; 1.90A {Methanocaldococcus jannaschii} PDB: 3v5s_A*
Probab=99.90 E-value=2.2e-24 Score=217.08 Aligned_cols=139 Identities=22% Similarity=0.265 Sum_probs=122.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhhhhhhhcccChhHHHHHHHHHHhcCCCCceeehhccchhhHHHhhh
Q 042851 285 AFICSLIFISGIAYIVTKLTDIISCVTGINAYVIAFTALASGTSWPDLVASKIAAERQITADSAIANITCSNSVNIYVGI 364 (453)
Q Consensus 285 ~f~~~i~~i~~~s~~lv~~a~~ia~~~gis~~viGlTivA~GTSlPEl~tSi~aa~~~g~~diAigNiiGSNifNillvL 364 (453)
.++.|++.+..++++++++++.+|+.+|+||.++|+|++|+|||+||+++|+.|+ ++|++|+|+||++|||+||+++++
T Consensus 8 ~l~~g~~~l~~~a~~lv~~~~~la~~lgis~~viGltiva~GTSlPEl~vsi~A~-~~g~~diaiGnivGSni~nillvl 86 (320)
T 3v5u_A 8 YFLLGLILLYYGSDWFVLGSERIARHFNVSNFVIGATVMAIGTSLPEILTSAYAS-YMHAPGISIGNAIGSCICNIGLVL 86 (320)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTBCHHHHHHTHHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHcccHHHHHHHHHH-hCCCCceeeeeecchHHHHHHHHH
Confidence 4667888899999999999999999999999999999999999999999999999 799999999999999999999999
Q ss_pred hHHHHHHhhhccccccccEEEecCCCchhHHHHHHHHHHHHHHHHHHhCCcccccccccchhhHHHHHHHHHHHHHHHHH
Q 042851 365 GIPWLIDTAYNFIVYKEPLRVQNAEGLSFSLLVFFCTSVGCIAVLVLRRLTLGAELGGPKLWAWVTSVYFMLLWIIFVVL 444 (453)
Q Consensus 365 Gl~~li~~~~~~~~~~~pi~v~~~~~l~~~~~~l~~~~~l~~~~~~~~~~~i~r~~G~~~~~~~~~~~~ll~~Y~~yl~~ 444 (453)
|+++++ .|+++ ++ .+.+|.+++++.++++..+ ..++ ++|++| ++++.+|+.|+.+
T Consensus 87 G~~~li----------~p~~v-~~-~~~~d~~~~l~~~~~l~~~--~~~g-is~~~g----------~~Ll~~Y~~yl~~ 141 (320)
T 3v5u_A 87 GLSAII----------SPIIV-DK-NLQKNILVYLLFVIFAAVI--GIDG-FSWIDG----------VVLLILFIIYLRW 141 (320)
T ss_dssp HHHHHH----------SCBCC-CH-HHHHHHHHHHHHHHHHHHH--TTTC-BCHHHH----------HHHHHHHHHHHHH
T ss_pred HHHHHH----------ccccc-cH-HHHHHHHHHHHHHHHHHHH--HHcc-cHHHHH----------HHHHHHHHHHHHH
Confidence 999999 56666 33 6778998888777665543 3445 999999 7999999999998
Q ss_pred HHHHH
Q 042851 445 SSLKV 449 (453)
Q Consensus 445 ~~l~~ 449 (453)
....+
T Consensus 142 ~~~~~ 146 (320)
T 3v5u_A 142 TVKNG 146 (320)
T ss_dssp HHHHT
T ss_pred HHHhc
Confidence 87643
No 3
>3rb5_A Na/Ca exchange protein; CBD12, calcium binding and regulation, metal binding protein; 2.35A {Drosophila melanogaster} PDB: 3rb7_A 3e9u_A
Probab=29.85 E-value=11 Score=36.80 Aligned_cols=15 Identities=33% Similarity=0.745 Sum_probs=0.0
Q ss_pred ccchhhhhhhhhhcc
Q 042851 226 VHALWKQQFVDSIAL 240 (453)
Q Consensus 226 ~~~~w~~~~~~a~~~ 240 (453)
++++|+|||++|+++
T Consensus 284 gt~sw~eqf~~a~tv 298 (298)
T 3rb5_A 284 GTSSWKEQFKDALTV 298 (298)
T ss_dssp ---------------
T ss_pred ccCcHHHHhhhhccC
Confidence 377899999999853
No 4
>2zjs_Y Preprotein translocase SECY subunit; translocon, SEC, protein-conducting-channel, membrane, prote transport, translocation, transmembrane, transport; 3.20A {Thermus thermophilus} PDB: 2zqp_Y
Probab=8.29 E-value=8.7e+02 Score=24.58 Aligned_cols=52 Identities=10% Similarity=0.052 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhhhhhhhcccChhHHHHHHHHH
Q 042851 287 ICSLIFISGIAYIVTKLTDIISCVTGINAYVIAFTALASGTSWPDLVASKIAA 339 (453)
Q Consensus 287 ~~~i~~i~~~s~~lv~~a~~ia~~~gis~~viGlTivA~GTSlPEl~tSi~aa 339 (453)
+..++.+..|+-++.|.++.+-+ .|+..-+-=+.+..+-.++|..+.+....
T Consensus 155 ~~~vl~L~aGt~~lmwLgE~It~-~GIGnGiSliI~~gIv~~lp~~~~~~~~~ 206 (434)
T 2zjs_Y 155 FVVVVTQVAGIALLLWMAERITE-YGIGNGTSLIIFAGIVVEWLPQILRTIGL 206 (434)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-TSSSCHHHHHHHHHHHHTHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh-cCcccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556667799999999999999 99998777777788899999977776543
No 5
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=6.44 E-value=4.2e+02 Score=18.30 Aligned_cols=9 Identities=22% Similarity=0.401 Sum_probs=4.7
Q ss_pred HHhCCcccc
Q 042851 410 VLRRLTLGA 418 (453)
Q Consensus 410 ~~~~~~i~r 418 (453)
++||++..+
T Consensus 33 ~~RRRr~~~ 41 (44)
T 2l2t_A 33 YVRRKSIKK 41 (44)
T ss_dssp HHHTTCSSC
T ss_pred Hhhhhhhhh
Confidence 356655543
No 6
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=5.48 E-value=5.1e+02 Score=17.79 Aligned_cols=7 Identities=29% Similarity=0.439 Sum_probs=3.7
Q ss_pred HhCCccc
Q 042851 411 LRRLTLG 417 (453)
Q Consensus 411 ~~~~~i~ 417 (453)
+||++..
T Consensus 35 ~RRr~~~ 41 (44)
T 2ks1_B 35 MRRRHIV 41 (44)
T ss_dssp HHTTTCC
T ss_pred hhhhHhh
Confidence 5655544
No 7
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=5.41 E-value=3.1e+02 Score=18.98 Aligned_cols=10 Identities=10% Similarity=0.305 Sum_probs=4.8
Q ss_pred HHHhCCcccc
Q 042851 409 LVLRRLTLGA 418 (453)
Q Consensus 409 ~~~~~~~i~r 418 (453)
+++||++..+
T Consensus 33 ~~~RRR~~~~ 42 (44)
T 2jwa_A 33 ILIKRRQQKI 42 (44)
T ss_dssp HHHHHHCSCC
T ss_pred hheehhhhhc
Confidence 3355555443
No 8
>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A*
Probab=5.31 E-value=1.7e+03 Score=21.03 Aligned_cols=54 Identities=7% Similarity=0.020 Sum_probs=34.5
Q ss_pred HHHHhCCChh-hhhhhhhhcccChhHHHHHHHHHHhcCCCCceeehhccchhhHHHh
Q 042851 307 ISCVTGINAY-VIAFTALASGTSWPDLVASKIAAERQITADSAIANITCSNSVNIYV 362 (453)
Q Consensus 307 ia~~~gis~~-viGlTivA~GTSlPEl~tSi~aa~~~g~~diAigNiiGSNifNill 362 (453)
++..+++++. ..|+.+++.-=+-. .+.+.+..-+|+.+.++....-||+.-++.
T Consensus 93 l~~~~~l~~~~~~Glil~~~~P~~~--~s~v~t~~a~Gd~~la~~~~~~stll~~~~ 147 (332)
T 3zux_A 93 LSKLLNLPAEIAVGVILVGCCPGGT--ASNVMTYLARGNVALSVAVTSVSTLTSPLL 147 (332)
T ss_dssp HHHHTTCCHHHHHHHHHHHHSCCCT--HHHHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCChHHHHHHHHHhcCCchh--HHHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Confidence 3444577765 56888887733322 223344445788888888888888776655
No 9
>2l34_A TYRO protein tyrosine kinase-binding protein; immunoreceptor, transmembrane assembly, DAP12, protein bindi; NMR {Homo sapiens} PDB: 2l35_B
Probab=4.83 E-value=3.2e+02 Score=17.66 Aligned_cols=24 Identities=25% Similarity=0.382 Sum_probs=15.7
Q ss_pred CccchhhhhhhhhhhHhHhhhhee
Q 042851 41 GLGPGTLVGSAAFDLFPIHAVCVV 64 (453)
Q Consensus 41 digvGnIVGS~IfNillIlGl~al 64 (453)
++..|++.|=-+.++..+..++.+
T Consensus 3 ~L~~gaIaGIVvgdi~~t~~i~~~ 26 (33)
T 2l34_A 3 TVSPGVLAGIVVGDLVLTVLIALA 26 (33)
T ss_dssp CCCTHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCcceEEeEeHHHHHHHHHHHHH
Confidence 456677777777776666655554
No 10
>1pfi_A Major coat protein of PF1 virus; complex(viral coat protein/DNA), helical virus; HET: DC; 3.00A {Pseudomonas phage PF1} SCOP: h.1.4.1 PDB: 1ifn_A 1ifm_A* 1pjf_A 1ql1_A 1ql2_A 1zn5_A 2ifm_A 2ifn_A 2klv_A 2ksj_A 2xkm_A 3ifm_A 4ifm_A
Probab=3.96 E-value=3.8e+02 Score=18.41 Aligned_cols=29 Identities=17% Similarity=0.056 Sum_probs=21.1
Q ss_pred hcCCCCceeehhccchhhHHHhhhhHHHHHHh
Q 042851 341 RQITADSAIANITCSNSVNIYVGIGIPWLIDT 372 (453)
Q Consensus 341 ~~g~~diAigNiiGSNifNillvLGl~~li~~ 372 (453)
-.|.+||. -+|.-|.-.+.++.++.++..
T Consensus 13 T~G~~Dm~---si~~~IVGaLvil~VAGLiys 41 (46)
T 1pfi_A 13 TDGQGDMK---AIGGYIVGALVILAVAGLIYS 41 (46)
T ss_dssp HHHTHHHH---HHHHHHHHHHHHHHHHHHHHH
T ss_pred hcCCccHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 56888874 466777777888888877753
Done!