Query 042851
Match_columns 453
No_of_seqs 271 out of 1763
Neff 6.3
Searched_HMMs 13730
Date Mon Mar 25 17:52:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042851.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/042851hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1vg0a1 c.3.1.3 (A:3-444,A:558 7.6 74 0.0054 30.7 2.0 22 322-344 9-30 (491)
2 d1qgoa_ c.92.1.2 (A:) Cobalt c 7.0 1.1E+02 0.0081 25.9 2.7 22 10-31 3-24 (257)
3 d2a5sa1 c.94.1.1 (A:7-142,A:14 6.5 53 0.0039 28.1 0.2 47 300-353 57-110 (277)
4 d2r6gf1 e.70.1.1 (F:13-260) Ma 4.0 3.7E+02 0.027 22.9 4.3 14 357-370 10-23 (248)
5 d1geqa_ c.1.2.4 (A:) Trp synth 3.9 1.6E+02 0.011 25.5 1.4 33 13-56 195-227 (248)
6 d1llda1 c.2.1.5 (A:7-149) Lact 3.6 1.6E+02 0.012 22.9 1.2 21 42-63 7-27 (143)
7 d1i0za1 c.2.1.5 (A:1-160) Lact 3.2 1.8E+02 0.013 23.2 1.2 21 42-63 26-46 (160)
8 d1gdta1 a.4.1.2 (A:141-183) ga 3.1 2.2E+02 0.016 18.1 1.2 14 303-316 20-33 (43)
9 d1mqia_ c.94.1.1 (A:) Glutamat 3.1 3.5E+02 0.025 21.7 3.0 50 300-353 34-89 (260)
10 d1pb7a_ c.94.1.1 (A:) N-methyl 3.0 2.6E+02 0.019 23.1 2.2 46 300-352 64-122 (289)
No 1
>d1vg0a1 c.3.1.3 (A:3-444,A:558-606) Rab escort protein 1 {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=7.64 E-value=74 Score=30.73 Aligned_cols=22 Identities=18% Similarity=0.341 Sum_probs=19.0
Q ss_pred hhhcccChhHHHHHHHHHHhcCC
Q 042851 322 ALASGTSWPDLVASKIAAERQIT 344 (453)
Q Consensus 322 ivA~GTSlPEl~tSi~aa~~~g~ 344 (453)
++-+||.|||-+.|...+ |+|+
T Consensus 9 VII~GTGL~ESILAaAlS-r~Gk 30 (491)
T d1vg0a1 9 VIVIGTGLPESIIAAACS-RSGQ 30 (491)
T ss_dssp EEEECCSHHHHHHHHHHH-HTTC
T ss_pred EEEECCChHHHHHHHHHH-hcCC
Confidence 355799999999999999 8887
No 2
>d1qgoa_ c.92.1.2 (A:) Cobalt chelatase CbiK {Salmonella typhimurium [TaxId: 90371]}
Probab=6.97 E-value=1.1e+02 Score=25.93 Aligned_cols=22 Identities=27% Similarity=0.431 Sum_probs=17.0
Q ss_pred cceeeeccCChhHHHHHHHHHH
Q 042851 10 DIALLAFGTSFPQISLATIDAI 31 (453)
Q Consensus 10 GlTivA~GTSaPEL~vSiia~~ 31 (453)
++-+++||||-||=.-..++++
T Consensus 3 aillv~fGs~~~e~~~~~i~~i 24 (257)
T d1qgoa_ 3 ALLVVSFGTSYHDTCEKNIVAC 24 (257)
T ss_dssp EEEEEECCCSCHHHHHHHHHHH
T ss_pred EEEEEeCCCCchhhHHHHHHHH
Confidence 5679999999998876555544
No 3
>d2a5sa1 c.94.1.1 (A:7-142,A:145-285) N-methyl-D-aspartate receptor subunit 1 {Rat (Rattus norvegicus), subtype 2A [TaxId: 10116]}
Probab=6.54 E-value=53 Score=28.14 Aligned_cols=47 Identities=11% Similarity=0.161 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHhCCChhhhhhhhhh---c----ccChhHHHHHHHHHHhcCCCCceeehhc
Q 042851 300 VTKLTDIISCVTGINAYVIAFTALA---S----GTSWPDLVASKIAAERQITADSAIANIT 353 (453)
Q Consensus 300 lv~~a~~ia~~~gis~~viGlTivA---~----GTSlPEl~tSi~aa~~~g~~diAigNii 353 (453)
-+|.+..+|+.+|+.-.+. .+. . -+|..+++. ++.+|+.|++++.+-
T Consensus 57 ~iDl~~~ia~~lg~~~e~~---~v~~~~~g~~~~~~w~~~l~----~l~~g~~Di~i~~~t 110 (277)
T d2a5sa1 57 CIDILKKLSRTVKFTYDLY---LVTNGKHGKKVNNVWNGMIG----EVVYQRAVMAVGSLT 110 (277)
T ss_dssp HHHHHHHHHHHHTCCEEEE---ECCSSSSCCEETTEECHHHH----HHHTTSCSEECSSCB
T ss_pred HHHHHHHHHHHhCCCEEEE---EccCCCcCccCCCCHHHHHh----hhhcccEEEEEEccE
Confidence 3577889999999874432 111 1 134444443 346899999988764
No 4
>d2r6gf1 e.70.1.1 (F:13-260) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}
Probab=4.00 E-value=3.7e+02 Score=22.92 Aligned_cols=14 Identities=14% Similarity=0.252 Sum_probs=8.4
Q ss_pred hhHHHhhhhHHHHH
Q 042851 357 SVNIYVGIGIPWLI 370 (453)
Q Consensus 357 ifNillvLGl~~li 370 (453)
++|.+.+.+++.++
T Consensus 10 l~~a~~~~~~~~~~ 23 (248)
T d2r6gf1 10 LLGLLVGYLVVLMY 23 (248)
T ss_dssp HHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 45666666666555
No 5
>d1geqa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=3.86 E-value=1.6e+02 Score=25.53 Aligned_cols=33 Identities=24% Similarity=0.380 Sum_probs=25.2
Q ss_pred eeeccCChhHHHHHHHHHHhhccccCCCCccchhhhhhhhhhhH
Q 042851 13 LLAFGTSFPQISLATIDAIRSIGNLYAGGLGPGTLVGSAAFDLF 56 (453)
Q Consensus 13 ivA~GTSaPEL~vSiia~~~~~~~~~~~digvGnIVGS~IfNil 56 (453)
.+.||=|-||=+-.+... .+=|-||||++-++.
T Consensus 195 ~vGFGI~~~e~v~~~~~~-----------~ADGvIVGSaiv~~i 227 (248)
T d1geqa_ 195 AVGFGVSKREHVVSLLKE-----------GANGVVVGSALVKII 227 (248)
T ss_dssp EEESCCCSHHHHHHHHHT-----------TCSEEEECHHHHHHH
T ss_pred eeecccCCHHHHHHHHhc-----------CCCEEEECHHHHHHH
Confidence 578999999987765433 234789999999876
No 6
>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]}
Probab=3.57 E-value=1.6e+02 Score=22.93 Aligned_cols=21 Identities=24% Similarity=0.308 Sum_probs=16.4
Q ss_pred ccchhhhhhhhhhhHhHhhhhe
Q 042851 42 LGPGTLVGSAAFDLFPIHAVCV 63 (453)
Q Consensus 42 igvGnIVGS~IfNillIlGl~a 63 (453)
||.|+ |||++++.+..-++|.
T Consensus 7 IGaG~-VG~~~a~~l~~~~l~~ 27 (143)
T d1llda1 7 IGAGA-VGSTLAFAAAQRGIAR 27 (143)
T ss_dssp ECCSH-HHHHHHHHHHHTTCCS
T ss_pred ECCCH-HHHHHHHHHHhcCCCc
Confidence 56677 8999998888777753
No 7
>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]}
Probab=3.25 E-value=1.8e+02 Score=23.21 Aligned_cols=21 Identities=24% Similarity=0.189 Sum_probs=17.7
Q ss_pred ccchhhhhhhhhhhHhHhhhhe
Q 042851 42 LGPGTLVGSAAFDLFPIHAVCV 63 (453)
Q Consensus 42 igvGnIVGS~IfNillIlGl~a 63 (453)
||.|+ |||.+...+..-|+|.
T Consensus 26 IGaG~-VG~~~A~~l~~~~l~~ 46 (160)
T d1i0za1 26 VGVGQ-VGMACAISILGKSLAD 46 (160)
T ss_dssp ECCSH-HHHHHHHHHHHTTCCS
T ss_pred ECCCH-HHHHHHHHHHhcCCCc
Confidence 78888 8999999888888776
No 8
>d1gdta1 a.4.1.2 (A:141-183) gamma,delta resolvase (C-terminal domain) {Escherichia coli [TaxId: 562]}
Probab=3.13 E-value=2.2e+02 Score=18.08 Aligned_cols=14 Identities=21% Similarity=-0.024 Sum_probs=11.2
Q ss_pred HHHHHHHHhCCChh
Q 042851 303 LTDIISCVTGINAY 316 (453)
Q Consensus 303 ~a~~ia~~~gis~~ 316 (453)
+++.||..+||+-.
T Consensus 20 gat~IAk~lgI~R~ 33 (43)
T d1gdta1 20 GASHISKTMNIARS 33 (43)
T ss_dssp CHHHHHHHHTCCHH
T ss_pred CHHHHHHHHCCCHH
Confidence 37889999999854
No 9
>d1mqia_ c.94.1.1 (A:) Glutamate receptor ligand binding core {Rat (Rattus norvegicus), GluR2 [TaxId: 10116]}
Probab=3.07 E-value=3.5e+02 Score=21.68 Aligned_cols=50 Identities=24% Similarity=0.194 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHhCCChhhhhhh------hhhcccChhHHHHHHHHHHhcCCCCceeehhc
Q 042851 300 VTKLTDIISCVTGINAYVIAFT------ALASGTSWPDLVASKIAAERQITADSAIANIT 353 (453)
Q Consensus 300 lv~~a~~ia~~~gis~~viGlT------ivA~GTSlPEl~tSi~aa~~~g~~diAigNii 353 (453)
=++.+..+|+.+|++-.++=.. ...-.++..++... +.+|+.|+++|++.
T Consensus 34 ~idl~~~ia~~lg~~~~~~~~~~~~~~~~~~~~~~w~~~~~~----l~~G~~D~~~~~~t 89 (260)
T d1mqia_ 34 CVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMVGE----LVYGKADIAIAPLT 89 (260)
T ss_dssp HHHHHHHHHHHHTCCEEEEECTTCCCCCBCTTTCCBCHHHHH----HHTTSCSEECSSCB
T ss_pred HHHHHHHHHHHhCCCeEEEecCCCccceeccccccHHHHHHh----hhcCcHHHHHhhhc
Confidence 3566889999999884332111 11112444554444 36799999998875
No 10
>d1pb7a_ c.94.1.1 (A:) N-methyl-D-aspartate receptor subunit 1 {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=3.00 E-value=2.6e+02 Score=23.10 Aligned_cols=46 Identities=17% Similarity=0.204 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHhCCChhhhhhhhhhccc-------------ChhHHHHHHHHHHhcCCCCceeehh
Q 042851 300 VTKLTDIISCVTGINAYVIAFTALASGT-------------SWPDLVASKIAAERQITADSAIANI 352 (453)
Q Consensus 300 lv~~a~~ia~~~gis~~viGlTivA~GT-------------SlPEl~tSi~aa~~~g~~diAigNi 352 (453)
=+|.+..||+.+|++-.+. .+.-|+ +..+++.+ +..|+.|++++.+
T Consensus 64 ~vDl~~~ia~~lg~~~e~~---~v~~~~~g~~~~~~~~~~~~w~~~~~~----l~~g~~Di~~~~~ 122 (289)
T d1pb7a_ 64 CIDLLIKLARTMNFTYEVH---LVADGKFGTQERVNNSNKKEWNGMMGE----LLSGQADMIVAPL 122 (289)
T ss_dssp HHHHHHHHHHHHTCCEEEE---ECTTCCCCCEEECTTSSCEEECHHHHH----HHHTSCSEECSSC
T ss_pred hHHHHHHHHHHhCCcEEEE---EccccccccccccccccccChhHhhhh----hhhhheeEEeecc
Confidence 4677899999999884442 122222 34555443 3679999998865
Done!