BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 042855
         (85 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2WSC|N Chain N, Improved Model Of Plant Photosystem I
 pdb|2WSE|N Chain N, Improved Model Of Plant Photosystem I
 pdb|2WSF|N Chain N, Improved Model Of Plant Photosystem I
          Length = 170

 Score = 95.9 bits (237), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 48/73 (65%), Positives = 55/73 (75%), Gaps = 2/73 (2%)

Query: 13  ETAGEKGLAACGKSKRIAVKQNVQFGTCKLLENFTDSQDLAKQKKVPFISDDLELECKGK 72
           E   +K LA  G +   A    V+FG+CK  ENFT  QDLAKQKKVPF+SDDL+LEC+GK
Sbjct: 100 ELNDKKRLATTGAN--FARAYTVEFGSCKFPENFTGCQDLAKQKKVPFLSDDLDLECEGK 157

Query: 73  DKYKCGSNVFWKW 85
           DKYKCGSNVFWKW
Sbjct: 158 DKYKCGSNVFWKW 170


>pdb|2O01|N Chain N, The Structure Of A Plant Photosystem I Supercomplex At
          3.4 Angstrom Resolution
 pdb|3LW5|N Chain N, Improved Model Of Plant Photosystem I
          Length = 85

 Score = 94.0 bits (232), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 48/73 (65%), Positives = 55/73 (75%), Gaps = 2/73 (2%)

Query: 13 ETAGEKGLAACGKSKRIAVKQNVQFGTCKLLENFTDSQDLAKQKKVPFISDDLELECKGK 72
          E   +K LA  G +   A    V+FG+CK  ENFT  QDLAKQKKVPF+SDDL+LEC+GK
Sbjct: 15 ELNDKKRLATTGAN--FARAYTVEFGSCKFPENFTGCQDLAKQKKVPFLSDDLDLECEGK 72

Query: 73 DKYKCGSNVFWKW 85
          DKYKCGSNVFWKW
Sbjct: 73 DKYKCGSNVFWKW 85


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.315    0.136    0.436 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,837,770
Number of Sequences: 62578
Number of extensions: 100543
Number of successful extensions: 76
Number of sequences better than 100.0: 2
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 74
Number of HSP's gapped (non-prelim): 2
length of query: 85
length of database: 14,973,337
effective HSP length: 53
effective length of query: 32
effective length of database: 11,656,703
effective search space: 373014496
effective search space used: 373014496
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 45 (21.9 bits)