BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 042855
         (85 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|P49107|PSAN_ARATH Photosystem I reaction center subunit N, chloroplastic
           OS=Arabidopsis thaliana GN=PSAN PE=1 SV=2
          Length = 171

 Score = 95.1 bits (235), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 42/52 (80%), Positives = 46/52 (88%)

Query: 34  NVQFGTCKLLENFTDSQDLAKQKKVPFISDDLELECKGKDKYKCGSNVFWKW 85
            VQFG+CK  ENFT  QDLAKQKKVPFIS+D+ LEC+GKDKYKCGSNVFWKW
Sbjct: 120 TVQFGSCKFPENFTGCQDLAKQKKVPFISEDIALECEGKDKYKCGSNVFWKW 171


>sp|P31093|PSAN_HORVU Photosystem I reaction center subunit N, chloroplastic OS=Hordeum
           vulgare GN=PSAN PE=2 SV=1
          Length = 145

 Score = 91.7 bits (226), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 41/57 (71%), Positives = 47/57 (82%)

Query: 29  IAVKQNVQFGTCKLLENFTDSQDLAKQKKVPFISDDLELECKGKDKYKCGSNVFWKW 85
            A    VQFG+CK   NFT  QDLAKQKKVPFI+DDLE+EC+GK+K+KCGSNVFWKW
Sbjct: 89  FARAYTVQFGSCKFPYNFTGCQDLAKQKKVPFITDDLEIECEGKEKFKCGSNVFWKW 145


>sp|O65107|PSAN_MAIZE Photosystem I reaction center subunit N, chloroplastic (Fragment)
           OS=Zea mays GN=PSAN PE=3 SV=1
          Length = 112

 Score = 90.1 bits (222), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 45/73 (61%), Positives = 54/73 (73%), Gaps = 2/73 (2%)

Query: 13  ETAGEKGLAACGKSKRIAVKQNVQFGTCKLLENFTDSQDLAKQKKVPFISDDLELECKGK 72
           E   +K LA  G +   A    V+FG+C+   NFT  QDLAKQKKVPFISDDLE+EC+GK
Sbjct: 42  ELNDKKRLATSGAN--FARAYTVEFGSCQFPYNFTGCQDLAKQKKVPFISDDLEIECEGK 99

Query: 73  DKYKCGSNVFWKW 85
           +K+KCGSNVFWKW
Sbjct: 100 EKFKCGSNVFWKW 112


>sp|Q9SBN5|PSAN_VOLCA Photosystem I reaction center subunit N, chloroplastic OS=Volvox
           carteri GN=PSAN PE=2 SV=1
          Length = 139

 Score = 48.1 bits (113), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 23/51 (45%), Positives = 34/51 (66%)

Query: 29  IAVKQNVQFGTCKLLENFTDSQDLAKQKKVPFISDDLELECKGKDKYKCGS 79
           +A  + V  GTC+  ENF   ++LA  K V +I++DL++EC+GKD   CGS
Sbjct: 82  LARSRTVYDGTCQFPENFFGCEELAFNKGVKYIAEDLKIECEGKDAKSCGS 132


>sp|Q32L79|INSL6_BOVIN Insulin-like peptide INSL6 OS=Bos taurus GN=INSL6 PE=2 SV=1
          Length = 205

 Score = 30.8 bits (68), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 7/52 (13%)

Query: 32  KQNVQFGTCKLLENFTDSQDLAKQKKVPFISDDLELECKGKDKYKCGSNVFW 83
           K N+ F T +  E  + SQD++     P+I + +E + K  +K K  SN+FW
Sbjct: 117 KANLPFKTRQ--EESSSSQDIS-----PYIHEIIEFQKKNTNKIKTLSNLFW 161


>sp|A2BTV0|ARLY_PROM5 Argininosuccinate lyase OS=Prochlorococcus marinus (strain MIT
           9515) GN=argH PE=3 SV=1
          Length = 459

 Score = 29.6 bits (65), Expect = 5.9,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 30/48 (62%), Gaps = 7/48 (14%)

Query: 20  LAACGKSKRIAVKQNVQFGTCKLLE----NFTDSQDLAK---QKKVPF 60
           +++C K+ RI + + ++F   KL++    +F+++ DLA     K+VPF
Sbjct: 335 ISSCLKAMRILLDEGIEFNVDKLIDSVNNDFSNATDLADYLVSKQVPF 382


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.315    0.136    0.436 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35,181,604
Number of Sequences: 539616
Number of extensions: 1205403
Number of successful extensions: 1729
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1725
Number of HSP's gapped (non-prelim): 7
length of query: 85
length of database: 191,569,459
effective HSP length: 56
effective length of query: 29
effective length of database: 161,350,963
effective search space: 4679177927
effective search space used: 4679177927
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 55 (25.8 bits)