Query 042855
Match_columns 85
No_of_seqs 14 out of 16
Neff 2.1
Searched_HMMs 29240
Date Mon Mar 25 17:55:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042855.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042855hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3lw5_N Photosystem I-N subunit 100.0 4.7E-56 1.6E-60 299.4 0.8 75 9-85 11-85 (85)
2 2wsc_N PSAN, PSI-N, photosyste 100.0 3E-53 1E-57 312.0 1.1 75 9-85 96-170 (170)
3 3u7d_B Protein HEG homolog 1; 58.4 2.9 9.8E-05 22.7 0.6 18 38-65 3-20 (26)
4 4dxr_B Nesprin-1; beta-sandwic 23.9 16 0.00053 20.9 -0.1 13 22-34 11-23 (35)
5 1ve4_A ATP phosphoribosyltrans 22.7 15 0.00051 26.6 -0.5 44 8-54 100-143 (206)
6 1o63_A ATP phosphoribosyltrans 20.9 14 0.00047 27.1 -0.9 18 17-36 103-120 (219)
7 2xzh_A Clathrin heavy chain 1; 18.3 27 0.00091 27.8 0.1 7 79-85 108-114 (365)
8 3ux2_A MIP18 family protein FA 17.9 8.7 0.0003 26.3 -2.4 13 11-23 103-115 (130)
9 1z7m_E ATP phosphoribosyltrans 17.0 19 0.00065 25.9 -0.9 37 15-53 108-144 (208)
10 2z30_B TK-subtilisin; thermoco 15.9 77 0.0026 18.0 1.7 28 38-67 35-62 (65)
No 1
>3lw5_N Photosystem I-N subunit, photosystem I reaction center subunit IX; photosynthesis, electron transfer, membrane proteins, large, complexes, chromophore; HET: CLA PQN BCR LMU LMG; 3.30A {Pisum sativum} PDB: 2o01_N*
Probab=100.00 E-value=4.7e-56 Score=299.35 Aligned_cols=75 Identities=64% Similarity=1.114 Sum_probs=74.3
Q ss_pred CCCcccccccceecccccceeeeeeeeeecceecCccccccHHHHhcCCCcceecCceeeeeccccceecccceeeC
Q 042855 9 PPRNETAGEKGLAACGKSKRIAVKQNVQFGTCKLLENFTDSQDLAKQKKVPFISDDLELECKGKDKYKCGSNVFWKW 85 (85)
Q Consensus 9 p~nkelndkKRlAtsg~~Anfars~tV~~g~C~Fp~Nf~gcq~~a~~k~V~FlSdDl~lECeGkdk~kCgSnvfwkw 85 (85)
.+|||||||||||||| ||||||||||||+|+||+|||||||||++++||||||||+|||||||+|||||||||||
T Consensus 11 ~aNKeLnDkKRlaTS~--ANfaRs~TV~~G~C~FP~Nf~GCq~~a~~~~V~FlsdD~~lECeGkd~~kcgsnvfwkw 85 (85)
T 3lw5_N 11 KTNKELNDKKRLATTG--ANFARAYTVEFGSCKFPENFTGCQDLAKQKKVPFLSDDLDLECEGKDKYKCGSNVFWKW 85 (85)
T ss_dssp CCCSTTCCCSSCCSSS--SSSTTTSSCCCSCSSCCSCCSCSSSCCCTTBTTBSCCSCCCSCCSCCCCCSSTTTCCCC
T ss_pred hhhhhhhhHHHhhhcc--cchhheeEeecccccCCccccchHHHHhcCCCceecccceeeecCcccccccccceecC
Confidence 5899999999999999 99999999999999999999999999999999999999999999999999999999999
No 2
>2wsc_N PSAN, PSI-N, photosystem I-N subunit; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Phaseolus vulgaris} PDB: 2wse_N* 2wsf_N*
Probab=100.00 E-value=3e-53 Score=311.96 Aligned_cols=75 Identities=64% Similarity=1.114 Sum_probs=74.2
Q ss_pred CCCcccccccceecccccceeeeeeeeeecceecCccccccHHHHhcCCCcceecCceeeeeccccceecccceeeC
Q 042855 9 PPRNETAGEKGLAACGKSKRIAVKQNVQFGTCKLLENFTDSQDLAKQKKVPFISDDLELECKGKDKYKCGSNVFWKW 85 (85)
Q Consensus 9 p~nkelndkKRlAtsg~~Anfars~tV~~g~C~Fp~Nf~gcq~~a~~k~V~FlSdDl~lECeGkdk~kCgSnvfwkw 85 (85)
-+|||||||||||||| |||||+||||||+|+||||||||||||++|+||||||||+|||||||+|||||||||||
T Consensus 96 ~aNKeLNDKKRlATS~--ANfaRa~TV~~GtCkFP~Nf~GCqdlAk~k~V~FlsdDl~lECEGkd~~kCgSnvfwkw 170 (170)
T 2wsc_N 96 KTNKELNDKKRLATTG--ANFARAYTVEFGSCKFPENFTGCQDLAKQKKVPFLSDDLDLECEGKDKYKCGSNVFWKW 170 (170)
T ss_dssp CSCSSSCCCSSCCSSS--SSSCSCTTCCCSCSSCCSCCSCSSSCCCTTCTTSSCCSCCCSCTTCCCCCSSCSCCCCC
T ss_pred hhhhhhhhhHhhhhcc--cchhheeeeecccccCCccccchHHHHhcCCCceecccceeeeccccCccccccceecC
Confidence 5899999999999999 99999999999999999999999999999999999999999999999999999999999
No 3
>3u7d_B Protein HEG homolog 1; FERM domain, RAP1 effector, membrane protein cytoplasmic TAI protein binding; 2.49A {Homo sapiens}
Probab=58.42 E-value=2.9 Score=22.69 Aligned_cols=18 Identities=28% Similarity=0.595 Sum_probs=12.6
Q ss_pred cceecCccccccHHHHhcCCCcceecCc
Q 042855 38 GTCKLLENFTDSQDLAKQKKVPFISDDL 65 (85)
Q Consensus 38 g~C~Fp~Nf~gcq~~a~~k~V~FlSdDl 65 (85)
-+|.||..+ +-.|||||-
T Consensus 3 hsciypgqy----------npsfisdds 20 (26)
T 3u7d_B 3 HSCIFPGQY----------NPSFISDES 20 (26)
T ss_pred ccccccCcc----------CcccccCcc
Confidence 368888655 445999984
No 4
>4dxr_B Nesprin-1; beta-sandwich, LINC complex, structural protein; HET: DMU; 2.32A {Homo sapiens} PDB: 4dxs_B*
Probab=23.94 E-value=16 Score=20.91 Aligned_cols=13 Identities=23% Similarity=0.371 Sum_probs=9.5
Q ss_pred cccccceeeeeee
Q 042855 22 ACGKSKRIAVKQN 34 (85)
Q Consensus 22 tsg~~Anfars~t 34 (85)
.+.++-|||||..
T Consensus 11 sC~~aNNFARSF~ 23 (35)
T 4dxr_B 11 SCALSNNFARSFH 23 (35)
T ss_dssp CCTTCCTGGGSSS
T ss_pred chHhhhhHHHHhH
Confidence 3556789999864
No 5
>1ve4_A ATP phosphoribosyltransferase; riken structural genomics/proteomics initiative structural genomics; 1.20A {Thermus thermophilus} SCOP: c.94.1.1
Probab=22.68 E-value=15 Score=26.59 Aligned_cols=44 Identities=11% Similarity=0.083 Sum_probs=25.1
Q ss_pred cCCCcccccccceecccccceeeeeeeeeecceecCccccccHHHHh
Q 042855 8 GPPRNETAGEKGLAACGKSKRIAVKQNVQFGTCKLLENFTDSQDLAK 54 (85)
Q Consensus 8 ~p~nkelndkKRlAtsg~~Anfars~tV~~g~C~Fp~Nf~gcq~~a~ 54 (85)
+|+..+.. .+|.||++ -|++|.+--+-|.=.---...|+-.+|-
T Consensus 100 vp~~~~~~-~~RIATky--p~l~~~yf~~~gi~~~ii~l~GsvE~ap 143 (206)
T 1ve4_A 100 RRPGDTGP-IRRVATKY--PNFTARLLKERGWAADVVELSGNIELAA 143 (206)
T ss_dssp ECTTCCSC-CCEEEESC--HHHHHHHHHHTTCCCEEEECSSCTHHHH
T ss_pred EECCcccC-CCEEEECc--hHHHHHHHHHCCCcEEEEECCCceeecc
Confidence 35442333 89999999 9999877544333111223445555553
No 6
>1o63_A ATP phosphoribosyltransferase; structural genomics; 2.00A {Thermotoga maritima} SCOP: c.94.1.1 PDB: 1o64_A 1usy_E* 1usy_H*
Probab=20.89 E-value=14 Score=27.15 Aligned_cols=18 Identities=17% Similarity=0.058 Sum_probs=15.0
Q ss_pred ccceecccccceeeeeeeee
Q 042855 17 EKGLAACGKSKRIAVKQNVQ 36 (85)
Q Consensus 17 kKRlAtsg~~Anfars~tV~ 36 (85)
.+|.||++ -|++|.+--+
T Consensus 103 ~~RIATky--p~l~r~yf~~ 120 (219)
T 1o63_A 103 EKRIATKF--PNVTQRYCES 120 (219)
T ss_dssp CEEEEESC--HHHHHHHHHH
T ss_pred CcEEEECc--HHHHHHHHHH
Confidence 89999999 9998876543
No 7
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=18.34 E-value=27 Score=27.80 Aligned_cols=7 Identities=57% Similarity=1.754 Sum_probs=5.0
Q ss_pred ccceeeC
Q 042855 79 SNVFWKW 85 (85)
Q Consensus 79 Snvfwkw 85 (85)
.=|||||
T Consensus 108 ~VvfWkW 114 (365)
T 2xzh_A 108 DVTFWKW 114 (365)
T ss_dssp CEEEEEE
T ss_pred ccEEEEe
Confidence 3478888
No 8
>3ux2_A MIP18 family protein FAM96A; immune system, DUF59, 3D domain swapping, protein-protein interaction, alpha and beta protein (A+B); HET: MSE; 1.80A {Homo sapiens} PDB: 3ux3_A
Probab=17.91 E-value=8.7 Score=26.34 Aligned_cols=13 Identities=15% Similarity=0.271 Sum_probs=10.9
Q ss_pred Ccccccccceecc
Q 042855 11 RNETAGEKGLAAC 23 (85)
Q Consensus 11 nkelndkKRlAts 23 (85)
||.||||.|.|+.
T Consensus 103 nKQl~DKERvaAA 115 (130)
T 3ux2_A 103 NKQINDKERVAAA 115 (130)
T ss_dssp HHHHHCHHHHHHH
T ss_pred HHhhhhHHHHHHH
Confidence 7889999998753
No 9
>1z7m_E ATP phosphoribosyltransferase; ATP-PRT, histidine biosynthesis, hiszg, alloste evolution; 2.90A {Lactococcus lactis} SCOP: c.94.1.1 PDB: 1z7n_E*
Probab=17.01 E-value=19 Score=25.93 Aligned_cols=37 Identities=19% Similarity=0.061 Sum_probs=22.2
Q ss_pred ccccceecccccceeeeeeeeeecceecCccccccHHHH
Q 042855 15 AGEKGLAACGKSKRIAVKQNVQFGTCKLLENFTDSQDLA 53 (85)
Q Consensus 15 ndkKRlAtsg~~Anfars~tV~~g~C~Fp~Nf~gcq~~a 53 (85)
...+|.||++ -|++|.+--+-|.=.=--...|+-.+|
T Consensus 108 ~~~~RIATky--p~l~~~yf~~~gi~~~ii~l~GsvE~a 144 (208)
T 1z7m_E 108 QRHKRIASKY--PRVTKKYFAQKQEDIEIIKLEGSVELG 144 (208)
T ss_dssp SSCEEEEESC--HHHHHHHHHHTTCCEEEEECSSCTTHH
T ss_pred cCCCEEEECc--hHHHHHHHHHcCCceEEEECCCceeec
Confidence 3579999999 999988754433311112244554444
No 10
>2z30_B TK-subtilisin; thermococcus kodakaraensis, hydrolase; 1.65A {Thermococcus kodakarensis} PDB: 2z2y_B 3a3p_B 2z56_B 2z58_B 2z57_B 3a3n_B 3a3o_B
Probab=15.88 E-value=77 Score=17.99 Aligned_cols=28 Identities=18% Similarity=0.032 Sum_probs=22.6
Q ss_pred cceecCccccccHHHHhcCCCcceecCcee
Q 042855 38 GTCKLLENFTDSQDLAKQKKVPFISDDLEL 67 (85)
Q Consensus 38 g~C~Fp~Nf~gcq~~a~~k~V~FlSdDl~l 67 (85)
-...+|++- =+.|+...+|.||..|...
T Consensus 35 ~~~~lp~~~--~~~L~~~p~V~yVE~D~~v 62 (65)
T 2z30_B 35 VVVDVPANA--VGKLKKMPGVEKVEFDHQA 62 (65)
T ss_dssp EEEEECGGG--HHHHHTSTTEEEEEECCEE
T ss_pred EEEEeCHHH--HHHHhcCCCceEEecCcEE
Confidence 356788876 4689999999999999754
Done!