Query 042855
Match_columns 85
No_of_seqs 14 out of 16
Neff 2.1
Searched_HMMs 13730
Date Mon Mar 25 17:55:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042855.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/042855hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2j5la1 g.61.1.1 (A:479-512) A 22.9 11 0.00083 20.0 0.6 7 60-66 2-8 (34)
2 d1ve4a1 c.94.1.1 (A:1-206) ATP 21.5 6.9 0.0005 26.2 -0.7 42 11-54 102-143 (206)
3 d1umha_ b.18.1.21 (A:) F-box o 19.5 49 0.0036 21.7 3.4 35 1-37 32-75 (184)
4 d1utca2 b.69.6.1 (A:4-330) Cla 18.3 13 0.00092 27.4 0.2 6 80-85 105-110 (327)
5 d1u8fo1 c.2.1.3 (O:3-151,O:316 17.6 17 0.0012 23.5 0.6 12 62-73 89-100 (169)
6 d2ivda2 d.16.1.5 (A:307-414) P 16.9 15 0.0011 21.5 0.2 10 3-12 22-31 (108)
7 d2j4wd1 g.61.1.1 (D:421-454) A 16.5 19 0.0014 19.0 0.6 7 60-66 2-8 (34)
8 d1cf2o1 c.2.1.3 (O:1-138,O:304 16.4 19 0.0014 22.7 0.7 11 63-73 79-89 (171)
9 d1u1ia1 c.2.1.3 (A:1-227,A:333 14.4 34 0.0025 23.7 1.6 19 48-66 209-227 (287)
10 d1vjpa1 c.2.1.3 (A:0-209,A:317 14.1 24 0.0017 24.4 0.7 19 48-66 193-211 (275)
No 1
>d2j5la1 g.61.1.1 (A:479-512) Apical membrane antigen 1 {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}
Probab=22.92 E-value=11 Score=20.00 Aligned_cols=7 Identities=71% Similarity=1.104 Sum_probs=5.8
Q ss_pred ceecCce
Q 042855 60 FISDDLE 66 (85)
Q Consensus 60 FlSdDl~ 66 (85)
|||+|.+
T Consensus 2 FIS~Dk~ 8 (34)
T d2j5la1 2 FISDDKD 8 (34)
T ss_dssp CEESSSG
T ss_pred eecCCcc
Confidence 8999964
No 2
>d1ve4a1 c.94.1.1 (A:1-206) ATP phosphoribosyltransferase (ATP-PRTase, HisG), catalytic domain {Thermus thermophilus [TaxId: 274]}
Probab=21.50 E-value=6.9 Score=26.25 Aligned_cols=42 Identities=12% Similarity=0.067 Sum_probs=26.9
Q ss_pred CcccccccceecccccceeeeeeeeeecceecCccccccHHHHh
Q 042855 11 RNETAGEKGLAACGKSKRIAVKQNVQFGTCKLLENFTDSQDLAK 54 (85)
Q Consensus 11 nkelndkKRlAtsg~~Anfars~tV~~g~C~Fp~Nf~gcq~~a~ 54 (85)
..+..+.+|.||.+ .|++|.+--+-|.=..---+.|+-.+|-
T Consensus 102 ~~~~~~~~rIATkY--pnit~~~~~~~gi~~~ii~~~Gs~E~ap 143 (206)
T d1ve4a1 102 PGDTGPIRRVATKY--PNFTARLLKERGWAADVVELSGNIELAA 143 (206)
T ss_dssp TTCCSCCCEEEESC--HHHHHHHHHHTTCCCEEEECSSCTHHHH
T ss_pred eeccCCccEeeHHH--HHHHHHHHHhcCCcceEEEEEccccccc
Confidence 34567778999999 9999887655554222233456655554
No 3
>d1umha_ b.18.1.21 (A:) F-box only protein 2 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=19.52 E-value=49 Score=21.66 Aligned_cols=35 Identities=29% Similarity=0.385 Sum_probs=21.4
Q ss_pred CCCCcccc--CC---Ccc----cccccceecccccceeeeeeeeee
Q 042855 1 EGGDGWLG--PP---RNE----TAGEKGLAACGKSKRIAVKQNVQF 37 (85)
Q Consensus 1 ~~~~~~~~--p~---nke----lndkKRlAtsg~~Anfars~tV~~ 37 (85)
.|||||.+ || +.+ -+-++-.+||. --+.+.+.|.-
T Consensus 32 ngGdgW~vE~~p~~~~~~~~~~~~v~~cFvtSy--~wc~k~Q~IDL 75 (184)
T d1umha_ 32 HGGDGWKVEELPGDNGVEFTQDDSVKKYFASSF--EWCRKAQVIDL 75 (184)
T ss_dssp CCTTCCEEEESSCTTCCCCTTTSSCCEEEECCS--SCEEEEEEEET
T ss_pred CCCCceeEeecCCccCccCCCCCcceEEEEEEe--eeeEeEEEEeh
Confidence 48999986 21 111 23366788888 56666666654
No 4
>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=18.34 E-value=13 Score=27.43 Aligned_cols=6 Identities=67% Similarity=2.018 Sum_probs=4.7
Q ss_pred cceeeC
Q 042855 80 NVFWKW 85 (85)
Q Consensus 80 nvfwkw 85 (85)
=|||||
T Consensus 105 VvfWkW 110 (327)
T d1utca2 105 VTFWKW 110 (327)
T ss_dssp CCEEEE
T ss_pred cEEEEe
Confidence 378888
No 5
>d1u8fo1 c.2.1.3 (O:3-151,O:316-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Human(Homo sapiens), liver isoform [TaxId: 9606]}
Probab=17.58 E-value=17 Score=23.50 Aligned_cols=12 Identities=17% Similarity=0.194 Sum_probs=9.9
Q ss_pred ecCceeeeeccc
Q 042855 62 SDDLELECKGKD 73 (85)
Q Consensus 62 SdDl~lECeGkd 73 (85)
.=|+-|||+|+-
T Consensus 89 ~vDiViEcTG~f 100 (169)
T d1u8fo1 89 GAEYVVESTGVF 100 (169)
T ss_dssp TCCEEEECSSSC
T ss_pred CCCEEEEeccee
Confidence 358999999985
No 6
>d2ivda2 d.16.1.5 (A:307-414) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}
Probab=16.90 E-value=15 Score=21.53 Aligned_cols=10 Identities=40% Similarity=0.740 Sum_probs=7.9
Q ss_pred CCccccCCCc
Q 042855 3 GDGWLGPPRN 12 (85)
Q Consensus 3 ~~~~~~p~nk 12 (85)
|-|.|+|+++
T Consensus 22 GfG~LVP~~e 31 (108)
T d2ivda2 22 GFGFLVPAEE 31 (108)
T ss_dssp SSEEECCGGG
T ss_pred ceEEEccCCC
Confidence 6789998764
No 7
>d2j4wd1 g.61.1.1 (D:421-454) Apical membrane antigen 1 {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}
Probab=16.46 E-value=19 Score=19.03 Aligned_cols=7 Identities=71% Similarity=1.028 Sum_probs=5.7
Q ss_pred ceecCce
Q 042855 60 FISDDLE 66 (85)
Q Consensus 60 FlSdDl~ 66 (85)
|||+|.+
T Consensus 2 fis~dk~ 8 (34)
T d2j4wd1 2 FISNDKE 8 (34)
T ss_dssp CEESSGG
T ss_pred eecCCcc
Confidence 8999964
No 8
>d1cf2o1 c.2.1.3 (O:1-138,O:304-336) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Methanothermus fervidus [TaxId: 2180]}
Probab=16.37 E-value=19 Score=22.72 Aligned_cols=11 Identities=18% Similarity=0.670 Sum_probs=9.5
Q ss_pred cCceeeeeccc
Q 042855 63 DDLELECKGKD 73 (85)
Q Consensus 63 dDl~lECeGkd 73 (85)
-|+-|||.|+-
T Consensus 79 vDvViEcTG~f 89 (171)
T d1cf2o1 79 ADIVIDCTPEG 89 (171)
T ss_dssp CSEEEECCSTT
T ss_pred CCEEEEccCCC
Confidence 48999999985
No 9
>d1u1ia1 c.2.1.3 (A:1-227,A:333-392) Myo-inositol 1-phosphate synthase {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=14.43 E-value=34 Score=23.71 Aligned_cols=19 Identities=32% Similarity=0.478 Sum_probs=17.0
Q ss_pred ccHHHHhcCCCcceecCce
Q 042855 48 DSQDLAKQKKVPFISDDLE 66 (85)
Q Consensus 48 gcq~~a~~k~V~FlSdDl~ 66 (85)
+-+.+|++++||.+-||++
T Consensus 209 al~ela~~~gvPiaGdD~K 227 (287)
T d1u1ia1 209 ALKELAEKKGVPHAGNDGK 227 (287)
T ss_dssp HHHHHHHTTTCEEEESSBC
T ss_pred HHHHHHHHcCCCEeccchh
Confidence 4589999999999999986
No 10
>d1vjpa1 c.2.1.3 (A:0-209,A:317-381) Hypothetical protein TM1419 {Thermotoga maritima [TaxId: 2336]}
Probab=14.12 E-value=24 Score=24.41 Aligned_cols=19 Identities=26% Similarity=0.312 Sum_probs=17.4
Q ss_pred ccHHHHhcCCCcceecCce
Q 042855 48 DSQDLAKQKKVPFISDDLE 66 (85)
Q Consensus 48 gcq~~a~~k~V~FlSdDl~ 66 (85)
+-+.+|++.+||.+-||++
T Consensus 193 al~ela~~~gvPi~GdD~K 211 (275)
T d1vjpa1 193 AFVELAKENNLVVFGDDGS 211 (275)
T ss_dssp HHHHHHHHTTEEEECSSBH
T ss_pred HHHHHHHHcCCcEEcccch
Confidence 5799999999999999985
Done!