Your job contains 1 sequence.
>042857
MKDNSSSTSTMINRNWVLKRKRRKLPCGPGLSNGKEENLVTSESPRNTPSAKRRLKNEIN
ADRSSTKKKGNDGYYYECVICDLGGNLLCCDSCPRTYHLQCLDPPLKRIPNGKWQCPKCT
QKNDQLKPISNLDSISKRARSKIITIKSQSGVKSSGADKVSQIFGNSILARKRSNKGKSV
LALGVKSLEKSLDSSQVDVSCSTKPENTSAGVPVEGSSSCPNDDDEKQLNASPTDSLADT
KFHPAEEVLPHSQVTKSEQNDEVPVEKHEKSSTNGSSGIKFVLAIGASERDRKRKPEVKD
EDSQKKLRVDKRKRSASASKKRRSKIGTLSPGTSKLHEKQRTNNDEVSASLCEVDVGTKG
LDAQRKDELAEETTDPLDKSDKAGVHVNEIPLCKDIVPFELQQVDRVLGCRVKGDDTSSS
CHISATATDDRHSDDFLVSENHNKILEENLACDTDLDAEVTENLAELSPNVIRSSDEECM
KNDIGVDRIQVYRRSVTKECKVTKECKGENAIDLLREDDKDSDPVAVNGKVQDESAVSTE
DLGERNDKMVVEDADVSLRDNEGLTVSEIHITCESTDKDVDVGKKTSGSVAKRVQEPAVT
ESAQVKGKAVSYEFLVKWVGKSNIHNSWIPESQLKVLAKRKLENYKAKYGTTVINICDER
WKQPQRVISLRSSKDGTREAFVKWTGLPYDECTWEKLDEPALEKYSHLTDLFVQFERQTL
KKDASEDELPRGKGDCQQSEIVALTEQPEELKGGALFPHQLEALNWLRKCWHKSKNVILA
DEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLSTMPNWLAEFALWAPNLNVVEYHGCA
KARAIIRQYEWHASDPDNLNKKTSSYKFNVLLTTYEMILADSSHLRGVPWEVLVVDEGHR
LKNSGSKLFSLLNSFSFQHRVLLTGTPLQNNIGEMYNLLNFLQPASFPSLSSFEEKFNDL
TTTQKVEELKKLVAPHMLRRLKKDAMQNIPPKTERMVPVELSSIQAEYYRAMLTKNYQIL
RNIGKGVAQQSMLNIVMQLRKVCNHPYLIPGTEPDSGSVEFLHEMRIKASAKLTLLHSML
KVLYKEGHRVLIFSQMTKLLDILEDYLNIEFGPKTYERVDGSVSVGDRQAAITRFNQDKS
RFVFLLSTRSCGLGINLATADTVIIYDSDFNPHADIQAMNRAHRIGQSKRLLVYRLVVRA
SVEERILQLAKKKLMLDQLFVNKSGSQKEVEDILRWGTEELFNDSPGINGKDMGENNTSI
EEAVRDLEQKHRKRGGGLGDVYQDKCTEGSTKIVWDENAIARLLDRSNLQSGSTDLAEGD
LENDMLGSVKATEWNEETTEDQAESPVAAVDDASAENSERKEENAVTGIEENEWDRLLRV
RLGALLVLAPIIISLHFMCTVTVG
The BLAST search returned 6 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 042857
(1404 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
UNIPROTKB|F1RIM3 - symbol:CHD5 "Uncharacterized protein" ... 1266 2.6e-158 4
UNIPROTKB|F1SSZ2 - symbol:CHD5 "Uncharacterized protein" ... 1230 1.3e-156 4
UNIPROTKB|E2R1M3 - symbol:CHD5 "Uncharacterized protein" ... 1266 1.7e-156 4
RGD|1582725 - symbol:Chd5 "chromodomain helicase DNA bind... 1273 2.9e-156 4
RGD|1311923 - symbol:Chd3 "chromodomain helicase DNA bind... 1201 9.9e-156 6
UNIPROTKB|F1MFF9 - symbol:Bt.62145 "Uncharacterized prote... 1230 1.0e-155 5
UNIPROTKB|Q8TDI0 - symbol:CHD5 "Chromodomain-helicase-DNA... 1267 4.8e-155 4
UNIPROTKB|F1LPP7 - symbol:Chd3 "Protein Chd3" species:101... 1201 5.2e-155 6
UNIPROTKB|F1M7Q0 - symbol:Chd3 "Protein Chd3" species:101... 1201 8.5e-155 6
FB|FBgn0262519 - symbol:Mi-2 species:7227 "Drosophila mel... 1178 1.5e-154 5
UNIPROTKB|E9PU01 - symbol:Chd4 "Protein Chd4" species:101... 1242 2.8e-154 5
UNIPROTKB|F5GWX5 - symbol:CHD4 "Chromodomain-helicase-DNA... 1242 2.9e-154 5
UNIPROTKB|Q14839 - symbol:CHD4 "Chromodomain-helicase-DNA... 1242 3.3e-154 5
UNIPROTKB|F1SLR5 - symbol:CHD4 "Uncharacterized protein" ... 1242 3.3e-154 5
UNIPROTKB|E2RHA0 - symbol:CHD4 "Uncharacterized protein" ... 1242 3.3e-154 5
UNIPROTKB|J9NW81 - symbol:CHD4 "Uncharacterized protein" ... 1242 5.1e-154 5
UNIPROTKB|F1LM59 - symbol:Chd4 "Protein Chd4" species:101... 1242 5.1e-154 5
UNIPROTKB|F1N3F6 - symbol:CHD4 "Uncharacterized protein" ... 1242 5.3e-154 5
ZFIN|ZDB-GENE-041111-187 - symbol:chd4a "chromodomain hel... 1242 2.7e-153 4
WB|WBGene00000482 - symbol:chd-3 species:6239 "Caenorhabd... 1190 6.0e-153 7
UNIPROTKB|Q22516 - symbol:chd-3 "Chromodomain-helicase-DN... 1190 6.0e-153 7
MGI|MGI:1344380 - symbol:Chd4 "chromodomain helicase DNA ... 1242 8.1e-152 4
ZFIN|ZDB-GENE-030131-4532 - symbol:chd4b "chromodomain he... 1242 1.5e-151 4
UNIPROTKB|F1NH78 - symbol:F1NH78 "Uncharacterized protein... 1215 4.5e-151 4
UNIPROTKB|F1N544 - symbol:CHD3 "Uncharacterized protein" ... 1205 5.4e-151 5
UNIPROTKB|E2RTI2 - symbol:CHD3 "Uncharacterized protein" ... 1204 6.9e-151 5
UNIPROTKB|F1ST12 - symbol:CHD3 "Uncharacterized protein" ... 1204 7.3e-151 5
UNIPROTKB|Q12873 - symbol:CHD3 "Chromodomain-helicase-DNA... 1201 9.6e-151 5
UNIPROTKB|E9PG89 - symbol:CHD3 "Chromodomain-helicase-DNA... 1201 2.0e-150 5
TAIR|locus:2040184 - symbol:PKL "PICKLE" species:3702 "Ar... 1368 4.6e-150 2
FB|FBgn0023395 - symbol:Chd3 "Chd3" species:7227 "Drosoph... 1223 1.9e-146 3
WB|WBGene00002637 - symbol:let-418 species:6239 "Caenorha... 1157 5.5e-145 6
UNIPROTKB|G5EBZ4 - symbol:let-418 "Protein let-418" speci... 1157 5.5e-145 6
UNIPROTKB|F1NH79 - symbol:CHD4 "Uncharacterized protein" ... 1030 1.1e-135 6
UNIPROTKB|J9NRN3 - symbol:CHD5 "Uncharacterized protein" ... 1069 1.3e-133 3
UNIPROTKB|F2Z2R5 - symbol:CHD5 "Chromodomain-helicase-DNA... 1069 1.3e-133 3
UNIPROTKB|K7EMY3 - symbol:CHD5 "Chromodomain-helicase-DNA... 1267 4.2e-132 2
DICTYBASE|DDB_G0284171 - symbol:DDB_G0284171 "CHR group p... 1171 4.1e-128 3
UNIPROTKB|E1C1A9 - symbol:CHD2 "Uncharacterized protein" ... 1110 4.8e-128 4
UNIPROTKB|O14647 - symbol:CHD2 "Chromodomain-helicase-DNA... 1092 1.1e-126 5
UNIPROTKB|I3LRQ2 - symbol:CHD2 "Uncharacterized protein" ... 1108 8.2e-126 3
UNIPROTKB|J9NSS6 - symbol:CHD2 "Uncharacterized protein" ... 1107 1.0e-125 3
UNIPROTKB|D4AD08 - symbol:Chd2 "Chromodomain helicase DNA... 1112 1.1e-125 4
UNIPROTKB|G3MXX3 - symbol:CHD2 "Uncharacterized protein" ... 1102 1.9e-125 4
UNIPROTKB|J9NX79 - symbol:CHD2 "Uncharacterized protein" ... 1107 2.2e-125 4
UNIPROTKB|E1BPM4 - symbol:CHD7 "Uncharacterized protein" ... 1183 4.6e-125 5
UNIPROTKB|F1SA77 - symbol:CHD2 "Uncharacterized protein" ... 1108 4.7e-125 4
UNIPROTKB|E2R5Z7 - symbol:CHD2 "Uncharacterized protein" ... 1107 6.0e-125 4
UNIPROTKB|J9PA90 - symbol:CHD2 "Uncharacterized protein" ... 1107 6.7e-125 4
UNIPROTKB|Q06A37 - symbol:CHD7 "Chromodomain-helicase-DNA... 1175 9.6e-125 4
UNIPROTKB|I3LQZ8 - symbol:CHD2 "Uncharacterized protein" ... 1146 7.9e-124 4
UNIPROTKB|F1RT88 - symbol:CHD7 "Uncharacterized protein" ... 1157 9.8e-123 5
UNIPROTKB|F1PWD8 - symbol:CHD7 "Uncharacterized protein" ... 1175 1.5e-122 4
UNIPROTKB|B6ZLK2 - symbol:CHD1 "Chromodomain-helicase-DNA... 1107 3.0e-122 5
UNIPROTKB|Q9P2D1 - symbol:CHD7 "Chromodomain-helicase-DNA... 1177 3.0e-122 5
MGI|MGI:88393 - symbol:Chd1 "chromodomain helicase DNA bi... 1110 5.6e-122 4
MGI|MGI:2444748 - symbol:Chd7 "chromodomain helicase DNA ... 1170 6.2e-122 4
RGD|1311921 - symbol:Chd7 "chromodomain helicase DNA bind... 1170 6.9e-121 4
UNIPROTKB|F1NSG3 - symbol:CHD7 "Chromodomain-helicase-DNA... 1165 9.0e-121 3
POMBASE|SPAC1783.05 - symbol:hrp1 "ATP-dependent DNA heli... 1133 1.2e-120 3
UNIPROTKB|J9P6Y8 - symbol:CHD1 "Uncharacterized protein" ... 1107 3.5e-120 4
WB|WBGene00007053 - symbol:chd-7 species:6239 "Caenorhabd... 1158 1.1e-119 2
DICTYBASE|DDB_G0280705 - symbol:DDB_G0280705 "CHR group p... 1134 1.1e-119 4
SGD|S000000966 - symbol:CHD1 "Chromatin remodeler that re... 1101 4.1e-119 2
UNIPROTKB|F1MGF2 - symbol:CHD1 "Uncharacterized protein" ... 1042 4.6e-119 4
UNIPROTKB|O14646 - symbol:CHD1 "Chromodomain-helicase-DNA... 1107 6.6e-119 3
UNIPROTKB|E1BS47 - symbol:CHD7 "Chromodomain-helicase-DNA... 1150 1.1e-118 2
ZFIN|ZDB-GENE-050419-256 - symbol:chd2 "chromodomain heli... 1045 1.7e-118 3
UNIPROTKB|E2QUI5 - symbol:CHD1 "Uncharacterized protein" ... 1107 2.2e-118 3
WB|WBGene00010369 - symbol:chd-1 species:6239 "Caenorhabd... 1105 4.0e-118 3
UNIPROTKB|Q8TD26 - symbol:CHD6 "Chromodomain-helicase-DNA... 1131 4.9e-118 3
UNIPROTKB|F1NVT7 - symbol:CHD6 "Uncharacterized protein" ... 1141 9.7e-118 2
FB|FBgn0086902 - symbol:kis "kismet" species:7227 "Drosop... 1128 1.0e-117 4
UNIPROTKB|F1RN66 - symbol:CHD1 "Uncharacterized protein" ... 1088 1.9e-117 4
UNIPROTKB|I3L6N4 - symbol:CHD1 "Uncharacterized protein" ... 1088 2.0e-117 4
UNIPROTKB|I3LIS2 - symbol:CHD1 "Uncharacterized protein" ... 1088 2.0e-117 4
UNIPROTKB|J9P0F6 - symbol:CHD6 "Uncharacterized protein" ... 1126 1.7e-115 3
UNIPROTKB|F1PTH3 - symbol:CHD6 "Uncharacterized protein" ... 1126 1.7e-115 3
ASPGD|ASPL0000052010 - symbol:AN1255 species:162425 "Emer... 1111 2.0e-115 2
UNIPROTKB|H3BTW3 - symbol:CHD9 "Chromodomain-helicase-DNA... 1081 2.8e-115 3
CGD|CAL0001390 - symbol:orf19.3035 species:5476 "Candida ... 1114 3.3e-115 2
POMBASE|SPAC3G6.01 - symbol:hrp3 "ATP-dependent DNA helic... 1102 6.9e-115 2
RGD|1594200 - symbol:LOC680231 "similar to chromodomain h... 1095 5.0e-114 3
TAIR|locus:2041644 - symbol:CHR5 "chromatin remodeling 5"... 1066 6.6e-114 3
UNIPROTKB|F1N734 - symbol:CHD6 "Uncharacterized protein" ... 1138 6.7e-114 1
UNIPROTKB|F1NLW6 - symbol:CHD6 "Uncharacterized protein" ... 1120 1.3e-113 2
FB|FBgn0250786 - symbol:Chd1 "Chromodomain-helicase-DNA-b... 1105 1.6e-113 2
TAIR|locus:2116747 - symbol:PKR2 "PICKLE RELATED 2" speci... 999 1.7e-113 3
ZFIN|ZDB-GENE-030131-6320 - symbol:chd8 "chromodomain hel... 1101 2.8e-113 3
UNIPROTKB|F1NLV5 - symbol:CHD6 "Uncharacterized protein" ... 1120 5.5e-113 2
UNIPROTKB|E1BDZ3 - symbol:CHD9 "Uncharacterized protein" ... 1075 5.7e-113 4
UNIPROTKB|Q9HCK8 - symbol:CHD8 "Chromodomain-helicase-DNA... 1087 2.3e-112 4
UNIPROTKB|Q3L8U1 - symbol:CHD9 "Chromodomain-helicase-DNA... 1081 3.0e-112 4
UNIPROTKB|E2RDK8 - symbol:CHD9 "Uncharacterized protein" ... 1082 3.9e-112 4
MGI|MGI:1924001 - symbol:Chd9 "chromodomain helicase DNA ... 1090 5.1e-112 3
MGI|MGI:1915022 - symbol:Chd8 "chromodomain helicase DNA ... 1087 5.1e-112 3
UNIPROTKB|B5DE69 - symbol:chd8 "Chromodomain-helicase-DNA... 1084 1.2e-111 3
UNIPROTKB|E2QUR1 - symbol:CHD8 "Uncharacterized protein" ... 1087 4.3e-111 3
RGD|620696 - symbol:Chd8 "chromodomain helicase DNA bindi... 1087 9.4e-111 3
UNIPROTKB|E1BS48 - symbol:CHD9 "Uncharacterized protein" ... 1068 1.1e-110 3
WARNING: Descriptions of 664 database sequences were not reported due to the
limiting value of parameter V = 100.
>UNIPROTKB|F1RIM3 [details] [associations]
symbol:CHD5 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012957 InterPro:IPR012958 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00628 Pfam:PF08073 Pfam:PF08074
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194
SMART:SM00184 SMART:SM00249 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR023780 GeneTree:ENSGT00560000076896
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
OMA:KRIDDGD EMBL:FP102454 Ensembl:ENSSSCT00000003736 Uniprot:F1RIM3
Length = 1723
Score = 1266 (450.7 bits), Expect = 2.6e-158, Sum P(4) = 2.6e-158
Identities = 293/623 (47%), Positives = 393/623 (63%)
Query: 753 GGALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLV 812
GG L P+QLE LNWLR W + + ILADEMGLGKTV F+ SLY E +K P LV
Sbjct: 629 GGTLHPYQLEGLNWLRFSWAQGTDTILADEMGLGKTVQTIVFLYSLYKEGHSKGPYLVSA 688
Query: 813 PLSTMPNWLAEFALWAPNLNVVEYHGCAKARAIIRQYEWHASDPDNLN-------KKTSS 865
PLST+ NW EF +WAP+ VV Y G ++R++IR+ E+ D + KK
Sbjct: 689 PLSTIINWEREFEMWAPDFYVVTYTGDKESRSVIRENEFSFEDNAIRSGKKVFRMKKEVQ 748
Query: 866 YKFNVLLTTYEMILADSSHLRGVPWEVLVVDEGHRXXXXXXXXXXXXXXXXXQHRVLLTG 925
KF+VLLT+YE+I D + L + W LVVDE HR +++LLTG
Sbjct: 749 IKFHVLLTSYELITIDQAILGSIEWACLVVDEAHRLKNNQSKFFRVLNSYKIDYKLLLTG 808
Query: 926 TPLQNNIGEMYNLLNFLQPASFPSLSSFEEKFNDLTTTQKVEELKKLVAPHMLRRLKKDA 985
TPLQNN+ E+++LLNFL P F +L F E+F D++ ++++L L+ PHMLRRLK D
Sbjct: 809 TPLQNNLEELFHLLNFLTPERFNNLEGFLEEFADISKEDQIKKLHDLLGPHMLRRLKADV 868
Query: 986 MQNIPPKTERMVPVELSSIQAEYYRAMLTKNYQILRNIGKGVAQQSMLNIVMQLRKVCNH 1045
+N+P KTE +V VELS +Q +YY+ +LT+N++ L + G G Q S+LNI+M L+K CNH
Sbjct: 869 FKNMPAKTELIVRVELSQMQKKYYKFILTRNFEALNSKGGG-NQVSLLNIMMDLKKCCNH 927
Query: 1046 PYLIP--GTE-PDSGSVEFLHEMRIKASAKLTLLHSMLKVLYKEGHRVLIFSQMTKLLDI 1102
PYL P E P + + +K+S KL LL MLK L EGHRVLIFSQMTK+LD+
Sbjct: 928 PYLFPVAAVEAPVLPNGSYDGSSLVKSSGKLMLLQKMLKKLRDEGHRVLIFSQMTKMLDL 987
Query: 1103 LEDYLNIEFGPKTYERVDGSVSVGDRQAAITRFNQDKSR-FVFLLSTRSCGLGINLATAD 1161
LED+L E G K YER+DG ++ G RQ AI RFN ++ F FLLSTR+ GLGINLATAD
Sbjct: 988 LEDFLEYE-GYK-YERIDGGITGGLRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATAD 1045
Query: 1162 TVIIYDSDFNPHADIQAMNRAHRIGQSKRLLVYRLVVRASVEERILQLAKKKLMLDQLFV 1221
TVIIYDSD+NPH DIQA +RAHRIGQ+K++++YR V RASVEERI Q+AK+K+ML L V
Sbjct: 1046 TVIIYDSDWNPHNDIQAFSRAHRIGQNKKVMIYRFVTRASVEERITQVAKRKMMLTHLVV 1105
Query: 1222 -----NKSGS--QKEVEDILRWGTEELFNDSPGINGK-DMGENN-TSIEEAVRD----LE 1268
+KSGS ++E++DIL++GTEELF D + G G+ T I + L
Sbjct: 1106 RPGLGSKSGSMTKQELDDILKFGTEELFKDD--VEGMMSQGQRPATPIPDVQSSKGGALA 1163
Query: 1269 QKHRKRGGGL--GDVYQDKCTEGSTKIVWDENAIARLLDRSNLQSGSTDLAEGDLENDML 1326
+K+ G GD +K E S+ I +D+ AI++LLDR+ + T+L N+ L
Sbjct: 1164 ASAKKKHGSTPPGD---NKDVEDSSVIHYDDAAISKLLDRNQDATDDTELQN---MNEYL 1217
Query: 1327 GSVKATEW--NEETTEDQAESPV 1347
S K ++ EE ++ E +
Sbjct: 1218 SSFKVAQYVVREEDGVEEVEREI 1240
Score = 340 (124.7 bits), Expect = 1.5e-43, Sum P(4) = 1.5e-43
Identities = 83/210 (39%), Positives = 114/210 (54%)
Query: 661 WKQPQRVISLRSSKDGTREAFVKWTGLPYDECTWEKLDEPALEKYSHLTDLFVQFERQTL 720
W R+++ K G +KW LPYD+CTWE +D+ + Y L + L
Sbjct: 523 WMMVHRILNHSFDKKGDVHYLIKWKDLPYDQCTWE-IDDIDIPYYDSLKQAYWGHRELML 581
Query: 721 KKDASEDE--LPRGK---GDCQQ----SEIVALT----EQPEELK--GGALFPHQLEALN 765
+DA + + +GK D Q+ + IV T +QP + GG L P+QLE LN
Sbjct: 582 GEDARLPKRLVKKGKKLRDDKQEKPPDTPIVDPTVKFDKQPWYIDSTGGTLHPYQLEGLN 641
Query: 766 WLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLSTMPNWLAEFA 825
WLR W + + ILADEMGLGKTV F+ SLY E +K P LV PLST+ NW EF
Sbjct: 642 WLRFSWAQGTDTILADEMGLGKTVQTIVFLYSLYKEGHSKGPYLVSAPLSTIINWEREFE 701
Query: 826 LWAPNLNVVEYHGCAKARAIIRQYEWHASD 855
+WAP+ VV Y G ++R++IR+ E+ D
Sbjct: 702 MWAPDFYVVTYTGDKESRSVIRENEFSFED 731
Score = 192 (72.6 bits), Expect = 2.6e-158, Sum P(4) = 2.6e-158
Identities = 30/65 (46%), Positives = 43/65 (66%)
Query: 56 KNEINADRSSTKKKGNDGYYYECVICDLGGNLLCCDSCPRTYHLQCLDPPLKRIPNGKWQ 115
K++ + + ++ D + C +C GG LLCCD+CP +YHL CL+PPL IPNG+W
Sbjct: 329 KDDDDEEEEGGCEEEEDDHMEFCRVCKDGGELLCCDACPSSYHLHCLNPPLPEIPNGEWL 388
Query: 116 CPKCT 120
CP+CT
Sbjct: 389 CPRCT 393
Score = 191 (72.3 bits), Expect = 3.3e-158, Sum P(4) = 3.3e-158
Identities = 39/95 (41%), Positives = 54/95 (56%)
Query: 40 VTSESPRNTPSAKRRLKNEINADRSSTKKKGNDGYYYE------CVICDLGGNLLCCDSC 93
+ S S R+ SA K++ R KK+ +DG YE C +C GG ++ CD+C
Sbjct: 238 IHSSSVRSECSAALGKKSK----RRRKKKRIDDGDGYETDHQDYCEVCQQGGEIILCDTC 293
Query: 94 PRTYHLQCLDPPLKRIPNGKWQCPKCTQKNDQLKP 128
PR YHL CLDP L++ P GKW CP C ++ Q +P
Sbjct: 294 PRAYHLVCLDPELEKAPEGKWSCPHCEKEGIQWEP 328
Score = 84 (34.6 bits), Expect = 2.6e-158, Sum P(4) = 2.6e-158
Identities = 20/53 (37%), Positives = 26/53 (49%)
Query: 596 EPAVTESAQVKGKAVSYEFLVKWVGKSNIHNSWIPESQLKVLAKRKLENYKAK 648
EP V ++G EF VKW G S H SW+ E QL++ NY+ K
Sbjct: 426 EPGVPPPKPLEG-IPEREFFVKWAGLSYWHCSWVKELQLELYHTVMYRNYQRK 477
Score = 84 (34.6 bits), Expect = 2.6e-158, Sum P(4) = 2.6e-158
Identities = 25/59 (42%), Positives = 30/59 (50%)
Query: 678 REAFVKWTGLPYDECTWEKLDEPALEKYSHLTDLFVQFERQTLKKDASEDE-LPRGKGD 735
RE FVKW GL Y C+W K E LE Y H T ++ ++R K D E G GD
Sbjct: 441 REFFVKWAGLSYWHCSWVK--ELQLELY-H-TVMYRNYQR---KNDMDEPPPFDYGSGD 492
Score = 49 (22.3 bits), Expect = 2.6e-158, Sum P(4) = 2.6e-158
Identities = 12/40 (30%), Positives = 22/40 (55%)
Query: 1323 NDMLGSVKATEWNEETTEDQAESPVAAVDDASAENSERKE 1362
ND S + EW +E +++Q+E + + +D + ER E
Sbjct: 1284 ND--ASQEDQEWQDELSDNQSEYSIGS-EDEDEDFEERPE 1320
Score = 49 (22.3 bits), Expect = 8.4e-147, Sum P(5) = 8.4e-147
Identities = 14/48 (29%), Positives = 19/48 (39%)
Query: 474 SSDEECMKNDIGVDRIQVYRRSVTKECKVTKECKGENAIDLLREDDKD 521
SS EE + + D ++ SV EC K + R DD D
Sbjct: 221 SSSEEDEREESDFDSASIHSSSVRSECSAALGKKSKRRRKKKRIDDGD 268
Score = 43 (20.2 bits), Expect = 3.6e-146, Sum P(5) = 3.6e-146
Identities = 12/47 (25%), Positives = 22/47 (46%)
Query: 257 SEQNDEVPVEKHEKSSTNGSS-GIKFVLAIGASERDRKRKPEVKDED 302
S + DE + +S + SS + A+G + R++K + D D
Sbjct: 222 SSEEDEREESDFDSASIHSSSVRSECSAALGKKSKRRRKKKRIDDGD 268
Score = 42 (19.8 bits), Expect = 8.4e-147, Sum P(5) = 8.4e-147
Identities = 12/44 (27%), Positives = 25/44 (56%)
Query: 31 LSNGKEENLVTSESPRN--TPSAKRRLKNEINADRSSTKKKGND 72
LS +E+ SES + +P+ K++ K + ++ + +KK +D
Sbjct: 7 LSENEEDLEEKSESEGSDYSPNKKKKKKLKDKKEKKAKRKKKDD 50
Score = 41 (19.5 bits), Expect = 1.1e-146, Sum P(5) = 1.1e-146
Identities = 12/44 (27%), Positives = 23/44 (52%)
Query: 259 QNDEVPVEKHEKSSTNGSSGIKFVLAIGASERDRKRKPEVKDED 302
+N+E EK E ++ S K + ++++K K + KD+D
Sbjct: 9 ENEEDLEEKSESEGSDYSPNKKKKKKL-KDKKEKKAKRKKKDDD 51
Score = 39 (18.8 bits), Expect = 1.4e-08, Sum P(3) = 1.4e-08
Identities = 6/18 (33%), Positives = 11/18 (61%)
Query: 1001 LSSIQAEYYRAMLTKNYQ 1018
+ +Q E Y ++ +NYQ
Sbjct: 458 VKELQLELYHTVMYRNYQ 475
Score = 38 (18.4 bits), Expect = 2.0e-42, Sum P(4) = 2.0e-42
Identities = 11/36 (30%), Positives = 18/36 (50%)
Query: 979 RRLKKDAMQNIPPKTERMVP-VELSSIQAEYYRAML 1013
R+LK D + +PP R+ +E+ A +A L
Sbjct: 1330 RQLKSDRDKPLPPLLARVGGNIEVLGFNARQRKAFL 1365
Score = 37 (18.1 bits), Expect = 2.8e-146, Sum P(5) = 2.8e-146
Identities = 8/18 (44%), Positives = 11/18 (61%)
Query: 367 DELAEETTDPLDKSDKAG 384
DEL+E D +KS+ G
Sbjct: 5 DELSENEEDLEEKSESEG 22
Score = 37 (18.1 bits), Expect = 7.1e-142, Sum P(5) = 7.1e-142
Identities = 7/28 (25%), Positives = 13/28 (46%)
Query: 723 DASEDELPRGKGDCQQSEIVALTEQPEE 750
D ++ P GK C E + +P++
Sbjct: 303 DPELEKAPEGKWSCPHCEKEGIQWEPKD 330
Score = 37 (18.1 bits), Expect = 7.1e-142, Sum P(5) = 7.1e-142
Identities = 9/42 (21%), Positives = 20/42 (47%)
Query: 699 EPALEKYSHLTDLFVQFERQTLKKDASEDELPRGKGDCQQSE 740
+P LEK E++ ++ + +D+ +G C++ E
Sbjct: 303 DPELEKAPEGKWSCPHCEKEGIQWEPKDDDDEEEEGGCEEEE 344
>UNIPROTKB|F1SSZ2 [details] [associations]
symbol:CHD5 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012957 InterPro:IPR012958 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00628 Pfam:PF08073 Pfam:PF08074
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194
SMART:SM00184 SMART:SM00249 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR023780 GeneTree:ENSGT00560000076896
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
EMBL:FP102454 Ensembl:ENSSSCT00000019561 Uniprot:F1SSZ2
Length = 1667
Score = 1230 (438.0 bits), Expect = 1.3e-156, Sum P(4) = 1.3e-156
Identities = 266/523 (50%), Positives = 351/523 (67%)
Query: 753 GGALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLV 812
GG L P+QLE LNWLR W + + ILADEMGLGKTV F+ SLY E +K P LV
Sbjct: 613 GGTLHPYQLEGLNWLRFSWAQGTDTILADEMGLGKTVQTIVFLYSLYKEGHSKGPYLVSA 672
Query: 813 PLSTMPNWLAEFALWAPNLNVVEYHGCAKARAIIRQYEWHASDPDNLN-------KKTSS 865
PLST+ NW EF +WAP+ VV Y G ++R++IR+ E+ D + KK
Sbjct: 673 PLSTIINWEREFEMWAPDFYVVTYTGDKESRSVIRENEFSFEDNAIRSGKKVFRMKKEVQ 732
Query: 866 YKFNVLLTTYEMILADSSHLRGVPWEVLVVDEGHRXXXXXXXXXXXXXXXXXQHRVLLTG 925
KF+VLLT+YE+I D + L + W LVVDE HR +++LLTG
Sbjct: 733 IKFHVLLTSYELITIDQAILGSIEWACLVVDEAHRLKNNQSKFFRVLNSYKIDYKLLLTG 792
Query: 926 TPLQNNIGEMYNLLNFLQPASFPSLSSFEEKFNDLTTTQKVEELKKLVAPHMLRRLKKDA 985
TPLQNN+ E+++LLNFL P F +L F E+F D++ ++++L L+ PHMLRRLK D
Sbjct: 793 TPLQNNLEELFHLLNFLTPERFNNLEGFLEEFADISKEDQIKKLHDLLGPHMLRRLKADV 852
Query: 986 MQNIPPKTERMVPVELSSIQAEYYRAMLTKNYQILRNIGKGVAQQSMLNIVMQLRKVCNH 1045
+N+P KTE +V VELS +Q +YY+ +LT+N++ L + G G Q S+LNI+M L+K CNH
Sbjct: 853 FKNMPAKTELIVRVELSQMQKKYYKFILTRNFEALNSKGGG-NQVSLLNIMMDLKKCCNH 911
Query: 1046 PYLIP--GTE-PDSGSVEFLHEMRIKASAKLTLLHSMLKVLYKEGHRVLIFSQMTKLLDI 1102
PYL P E P + + +K+S KL LL MLK L EGHRVLIFSQMTK+LD+
Sbjct: 912 PYLFPVAAVEAPVLPNGSYDGSSLVKSSGKLMLLQKMLKKLRDEGHRVLIFSQMTKMLDL 971
Query: 1103 LEDYLNIEFGPKTYERVDGSVSVGDRQAAITRFNQDKSR-FVFLLSTRSCGLGINLATAD 1161
LED+L E G K YER+DG ++ G RQ AI RFN ++ F FLLSTR+ GLGINLATAD
Sbjct: 972 LEDFLEYE-GYK-YERIDGGITGGLRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATAD 1029
Query: 1162 TVIIYDSDFNPHADIQAMNRAHRIGQSKRLLVYRLVVRASVEERILQLAKKKLMLDQLFV 1221
TVIIYDSD+NPH DIQA +RAHRIGQ+K++++YR V RASVEERI Q+AK+K+ML L V
Sbjct: 1030 TVIIYDSDWNPHNDIQAFSRAHRIGQNKKVMIYRFVTRASVEERITQVAKRKMMLTHLVV 1089
Query: 1222 -----NKSGS--QKEVEDILRWGTEELFNDSPGINGKDMGENN 1257
+KSGS ++E++DIL++GTEELF D + KD+ +++
Sbjct: 1090 RPGLGSKSGSMTKQELDDILKFGTEELFKDDVEGDNKDVEDSS 1132
Score = 340 (124.7 bits), Expect = 1.0e-45, Sum P(4) = 1.0e-45
Identities = 83/210 (39%), Positives = 114/210 (54%)
Query: 661 WKQPQRVISLRSSKDGTREAFVKWTGLPYDECTWEKLDEPALEKYSHLTDLFVQFERQTL 720
W R+++ K G +KW LPYD+CTWE +D+ + Y L + L
Sbjct: 507 WMMVHRILNHSFDKKGDVHYLIKWKDLPYDQCTWE-IDDIDIPYYDSLKQAYWGHRELML 565
Query: 721 KKDASEDE--LPRGK---GDCQQ----SEIVALT----EQPEELK--GGALFPHQLEALN 765
+DA + + +GK D Q+ + IV T +QP + GG L P+QLE LN
Sbjct: 566 GEDARLPKRLVKKGKKLRDDKQEKPPDTPIVDPTVKFDKQPWYIDSTGGTLHPYQLEGLN 625
Query: 766 WLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLSTMPNWLAEFA 825
WLR W + + ILADEMGLGKTV F+ SLY E +K P LV PLST+ NW EF
Sbjct: 626 WLRFSWAQGTDTILADEMGLGKTVQTIVFLYSLYKEGHSKGPYLVSAPLSTIINWEREFE 685
Query: 826 LWAPNLNVVEYHGCAKARAIIRQYEWHASD 855
+WAP+ VV Y G ++R++IR+ E+ D
Sbjct: 686 MWAPDFYVVTYTGDKESRSVIRENEFSFED 715
Score = 192 (72.6 bits), Expect = 1.3e-156, Sum P(4) = 1.3e-156
Identities = 30/65 (46%), Positives = 43/65 (66%)
Query: 56 KNEINADRSSTKKKGNDGYYYECVICDLGGNLLCCDSCPRTYHLQCLDPPLKRIPNGKWQ 115
K++ + + ++ D + C +C GG LLCCD+CP +YHL CL+PPL IPNG+W
Sbjct: 313 KDDDDEEEEGGCEEEEDDHMEFCRVCKDGGELLCCDACPSSYHLHCLNPPLPEIPNGEWL 372
Query: 116 CPKCT 120
CP+CT
Sbjct: 373 CPRCT 377
Score = 191 (72.3 bits), Expect = 1.6e-156, Sum P(4) = 1.6e-156
Identities = 39/95 (41%), Positives = 54/95 (56%)
Query: 40 VTSESPRNTPSAKRRLKNEINADRSSTKKKGNDGYYYE------CVICDLGGNLLCCDSC 93
+ S S R+ SA K++ R KK+ +DG YE C +C GG ++ CD+C
Sbjct: 222 IHSSSVRSECSAALGKKSK----RRRKKKRIDDGDGYETDHQDYCEVCQQGGEIILCDTC 277
Query: 94 PRTYHLQCLDPPLKRIPNGKWQCPKCTQKNDQLKP 128
PR YHL CLDP L++ P GKW CP C ++ Q +P
Sbjct: 278 PRAYHLVCLDPELEKAPEGKWSCPHCEKEGIQWEP 312
Score = 84 (34.6 bits), Expect = 1.3e-156, Sum P(4) = 1.3e-156
Identities = 20/53 (37%), Positives = 26/53 (49%)
Query: 596 EPAVTESAQVKGKAVSYEFLVKWVGKSNIHNSWIPESQLKVLAKRKLENYKAK 648
EP V ++G EF VKW G S H SW+ E QL++ NY+ K
Sbjct: 410 EPGVPPPKPLEG-IPEREFFVKWAGLSYWHCSWVKELQLELYHTVMYRNYQRK 461
Score = 84 (34.6 bits), Expect = 1.3e-156, Sum P(4) = 1.3e-156
Identities = 25/59 (42%), Positives = 30/59 (50%)
Query: 678 REAFVKWTGLPYDECTWEKLDEPALEKYSHLTDLFVQFERQTLKKDASEDE-LPRGKGD 735
RE FVKW GL Y C+W K E LE Y H T ++ ++R K D E G GD
Sbjct: 425 REFFVKWAGLSYWHCSWVK--ELQLELY-H-TVMYRNYQR---KNDMDEPPPFDYGSGD 476
Score = 69 (29.3 bits), Expect = 1.3e-156, Sum P(4) = 1.3e-156
Identities = 23/71 (32%), Positives = 37/71 (52%)
Query: 1280 DVYQD-KCTEGSTKIVWDENAIARLLDRSNLQSGSTDLAEGDLENDMLGSVKATEW--NE 1336
DV D K E S+ I +D+ AI++LLDR+ + T+L N+ L S K ++ E
Sbjct: 1120 DVEGDNKDVEDSSVIHYDDAAISKLLDRNQDATDDTELQN---MNEYLSSFKVAQYVVRE 1176
Query: 1337 ETTEDQAESPV 1347
E ++ E +
Sbjct: 1177 EDGVEEVEREI 1187
Score = 49 (22.3 bits), Expect = 1.6e-154, Sum P(4) = 1.6e-154
Identities = 12/40 (30%), Positives = 22/40 (55%)
Query: 1323 NDMLGSVKATEWNEETTEDQAESPVAAVDDASAENSERKE 1362
ND S + EW +E +++Q+E + + +D + ER E
Sbjct: 1231 ND--ASQEDQEWQDELSDNQSEYSIGS-EDEDEDFEERPE 1267
Score = 49 (22.3 bits), Expect = 8.2e-145, Sum P(5) = 8.2e-145
Identities = 14/48 (29%), Positives = 19/48 (39%)
Query: 474 SSDEECMKNDIGVDRIQVYRRSVTKECKVTKECKGENAIDLLREDDKD 521
SS EE + + D ++ SV EC K + R DD D
Sbjct: 205 SSSEEDEREESDFDSASIHSSSVRSECSAALGKKSKRRRKKKRIDDGD 252
Score = 43 (20.2 bits), Expect = 3.5e-144, Sum P(5) = 3.5e-144
Identities = 12/47 (25%), Positives = 22/47 (46%)
Query: 257 SEQNDEVPVEKHEKSSTNGSS-GIKFVLAIGASERDRKRKPEVKDED 302
S + DE + +S + SS + A+G + R++K + D D
Sbjct: 206 SSEEDEREESDFDSASIHSSSVRSECSAALGKKSKRRRKKKRIDDGD 252
Score = 39 (18.8 bits), Expect = 8.2e-145, Sum P(5) = 8.2e-145
Identities = 8/31 (25%), Positives = 18/31 (58%)
Query: 42 SESPRNTPSAKRRLKNEINADRSSTKKKGND 72
SE +P+ K++ K + ++ + +KK +D
Sbjct: 4 SEGSDYSPNKKKKKKLKDKKEKKAKRKKKDD 34
Score = 39 (18.8 bits), Expect = 1.2e-10, Sum P(3) = 1.2e-10
Identities = 6/18 (33%), Positives = 11/18 (61%)
Query: 1001 LSSIQAEYYRAMLTKNYQ 1018
+ +Q E Y ++ +NYQ
Sbjct: 442 VKELQLELYHTVMYRNYQ 459
Score = 38 (18.4 bits), Expect = 1.7e-42, Sum P(4) = 1.7e-42
Identities = 11/36 (30%), Positives = 18/36 (50%)
Query: 979 RRLKKDAMQNIPPKTERMVP-VELSSIQAEYYRAML 1013
R+LK D + +PP R+ +E+ A +A L
Sbjct: 1277 RQLKSDRDKPLPPLLARVGGNIEVLGFNARQRKAFL 1312
Score = 37 (18.1 bits), Expect = 6.9e-140, Sum P(5) = 6.9e-140
Identities = 7/28 (25%), Positives = 13/28 (46%)
Query: 723 DASEDELPRGKGDCQQSEIVALTEQPEE 750
D ++ P GK C E + +P++
Sbjct: 287 DPELEKAPEGKWSCPHCEKEGIQWEPKD 314
Score = 37 (18.1 bits), Expect = 6.9e-140, Sum P(5) = 6.9e-140
Identities = 9/42 (21%), Positives = 20/42 (47%)
Query: 699 EPALEKYSHLTDLFVQFERQTLKKDASEDELPRGKGDCQQSE 740
+P LEK E++ ++ + +D+ +G C++ E
Sbjct: 287 DPELEKAPEGKWSCPHCEKEGIQWEPKDDDDEEEEGGCEEEE 328
>UNIPROTKB|E2R1M3 [details] [associations]
symbol:CHD5 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012957 InterPro:IPR012958 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00628 Pfam:PF08073 Pfam:PF08074
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194
SMART:SM00184 SMART:SM00249 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR023780 GeneTree:ENSGT00560000076896
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
OMA:KRIDDGD EMBL:AAEX03003895 EMBL:AAEX03003896 EMBL:AAEX03003897
Ensembl:ENSCAFT00000031086 Uniprot:E2R1M3
Length = 1812
Score = 1266 (450.7 bits), Expect = 1.7e-156, Sum P(4) = 1.7e-156
Identities = 293/623 (47%), Positives = 393/623 (63%)
Query: 753 GGALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLV 812
GG L P+QLE LNWLR W + + ILADEMGLGKTV F+ SLY E +K P LV
Sbjct: 560 GGTLHPYQLEGLNWLRFSWAQGTDTILADEMGLGKTVQTIVFLYSLYKEGHSKGPYLVSA 619
Query: 813 PLSTMPNWLAEFALWAPNLNVVEYHGCAKARAIIRQYEWHASDPDNLN-------KKTSS 865
PLST+ NW EF +WAP+ VV Y G ++R++IR+ E+ D + KK
Sbjct: 620 PLSTIINWEREFEMWAPDFYVVTYTGDKESRSVIRENEFSFEDNAIRSGKKVFRMKKEVQ 679
Query: 866 YKFNVLLTTYEMILADSSHLRGVPWEVLVVDEGHRXXXXXXXXXXXXXXXXXQHRVLLTG 925
KF+VLLT+YE+I D + L + W LVVDE HR +++LLTG
Sbjct: 680 IKFHVLLTSYELITIDQAILGSIEWACLVVDEAHRLKNNQSKFFRVLNSYKIDYKLLLTG 739
Query: 926 TPLQNNIGEMYNLLNFLQPASFPSLSSFEEKFNDLTTTQKVEELKKLVAPHMLRRLKKDA 985
TPLQNN+ E+++LLNFL P F +L F E+F D++ ++++L L+ PHMLRRLK D
Sbjct: 740 TPLQNNLEELFHLLNFLTPERFNNLEGFLEEFADISKEDQIKKLHDLLGPHMLRRLKADV 799
Query: 986 MQNIPPKTERMVPVELSSIQAEYYRAMLTKNYQILRNIGKGVAQQSMLNIVMQLRKVCNH 1045
+N+P KTE +V VELS +Q +YY+ +LT+N++ L + G G Q S+LNI+M L+K CNH
Sbjct: 800 FKNMPAKTELIVRVELSQMQKKYYKFILTRNFEALNSKGGG-NQVSLLNIMMDLKKCCNH 858
Query: 1046 PYLIP--GTE-PDSGSVEFLHEMRIKASAKLTLLHSMLKVLYKEGHRVLIFSQMTKLLDI 1102
PYL P E P + + +K+S KL LL MLK L EGHRVLIFSQMTK+LD+
Sbjct: 859 PYLFPVAAVEAPVLPNGSYDGSSLVKSSGKLMLLQKMLKKLRDEGHRVLIFSQMTKMLDL 918
Query: 1103 LEDYLNIEFGPKTYERVDGSVSVGDRQAAITRFNQDKSR-FVFLLSTRSCGLGINLATAD 1161
LED+L E G K YER+DG ++ G RQ AI RFN ++ F FLLSTR+ GLGINLATAD
Sbjct: 919 LEDFLEYE-GYK-YERIDGGITGGLRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATAD 976
Query: 1162 TVIIYDSDFNPHADIQAMNRAHRIGQSKRLLVYRLVVRASVEERILQLAKKKLMLDQLFV 1221
TVIIYDSD+NPH DIQA +RAHRIGQ+K++++YR V RASVEERI Q+AK+K+ML L V
Sbjct: 977 TVIIYDSDWNPHNDIQAFSRAHRIGQNKKVMIYRFVTRASVEERITQVAKRKMMLTHLVV 1036
Query: 1222 -----NKSGS--QKEVEDILRWGTEELFNDSPGINGK-DMGENN-TSIEEAVRD----LE 1268
+KSGS ++E++DIL++GTEELF D + G G+ T I + L
Sbjct: 1037 RPGLGSKSGSMTKQELDDILKFGTEELFKDD--VEGMMSQGQRPVTPIPDVQSSKGGALA 1094
Query: 1269 QKHRKRGGGL--GDVYQDKCTEGSTKIVWDENAIARLLDRSNLQSGSTDLAEGDLENDML 1326
+K+ G GD +K E S+ I +D+ AI++LLDR+ + T+L N+ L
Sbjct: 1095 ASAKKKHGSTPPGD---NKDVEDSSVIHYDDAAISKLLDRNQDATDDTELQN---MNEYL 1148
Query: 1327 GSVKATEW--NEETTEDQAESPV 1347
S K ++ EE ++ E +
Sbjct: 1149 SSFKVAQYVVREEDGVEEVEREI 1171
Score = 341 (125.1 bits), Expect = 1.5e-43, Sum P(4) = 1.5e-43
Identities = 83/210 (39%), Positives = 115/210 (54%)
Query: 661 WKQPQRVISLRSSKDGTREAFVKWTGLPYDECTWEKLDEPALEKYSHLTDLFVQFERQTL 720
W R+++ K G +KW LPYD+CTWE +D+ + Y +L + L
Sbjct: 454 WMMIHRILNHSFDKKGDVHYLIKWKDLPYDQCTWE-IDDIDIPYYDNLKQAYWGHRELML 512
Query: 721 KKDASEDE--LPRGK---GDCQQ----SEIVALT----EQPEELK--GGALFPHQLEALN 765
+DA + + +GK D Q+ + IV T +QP + GG L P+QLE LN
Sbjct: 513 GEDARLPKRLVKKGKKLKDDKQEKPPDTPIVDPTVKFDKQPWYIDSTGGTLHPYQLEGLN 572
Query: 766 WLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLSTMPNWLAEFA 825
WLR W + + ILADEMGLGKTV F+ SLY E +K P LV PLST+ NW EF
Sbjct: 573 WLRFSWAQGTDTILADEMGLGKTVQTIVFLYSLYKEGHSKGPYLVSAPLSTIINWEREFE 632
Query: 826 LWAPNLNVVEYHGCAKARAIIRQYEWHASD 855
+WAP+ VV Y G ++R++IR+ E+ D
Sbjct: 633 MWAPDFYVVTYTGDKESRSVIRENEFSFED 662
Score = 192 (72.6 bits), Expect = 1.7e-156, Sum P(4) = 1.7e-156
Identities = 30/65 (46%), Positives = 43/65 (66%)
Query: 56 KNEINADRSSTKKKGNDGYYYECVICDLGGNLLCCDSCPRTYHLQCLDPPLKRIPNGKWQ 115
K++ + + ++ D + C +C GG LLCCD+CP +YHL CL+PPL IPNG+W
Sbjct: 260 KDDDDEEEEGGCEEEEDDHMEFCRVCKDGGELLCCDACPSSYHLHCLNPPLPEIPNGEWL 319
Query: 116 CPKCT 120
CP+CT
Sbjct: 320 CPRCT 324
Score = 189 (71.6 bits), Expect = 3.4e-156, Sum P(4) = 3.4e-156
Identities = 33/72 (45%), Positives = 44/72 (61%)
Query: 63 RSSTKKKGNDGYYYE------CVICDLGGNLLCCDSCPRTYHLQCLDPPLKRIPNGKWQC 116
R KK+ +DG YE C +C GG ++ CD+CPR YHL CLDP L++ P GKW C
Sbjct: 188 RRRKKKRIDDGDGYETDHQDYCEVCQQGGEIILCDTCPRAYHLVCLDPELEKAPEGKWSC 247
Query: 117 PKCTQKNDQLKP 128
P C ++ Q +P
Sbjct: 248 PHCEKEGIQWEP 259
Score = 84 (34.6 bits), Expect = 1.7e-156, Sum P(4) = 1.7e-156
Identities = 20/53 (37%), Positives = 26/53 (49%)
Query: 596 EPAVTESAQVKGKAVSYEFLVKWVGKSNIHNSWIPESQLKVLAKRKLENYKAK 648
EP V ++G EF VKW G S H SW+ E QL++ NY+ K
Sbjct: 357 EPGVPPPKPLEG-IPEREFFVKWAGLSYWHCSWVKELQLELYHTVMYRNYQRK 408
Score = 84 (34.6 bits), Expect = 1.7e-156, Sum P(4) = 1.7e-156
Identities = 25/59 (42%), Positives = 30/59 (50%)
Query: 678 REAFVKWTGLPYDECTWEKLDEPALEKYSHLTDLFVQFERQTLKKDASEDE-LPRGKGD 735
RE FVKW GL Y C+W K E LE Y H T ++ ++R K D E G GD
Sbjct: 372 REFFVKWAGLSYWHCSWVK--ELQLELY-H-TVMYRNYQR---KNDMDEPPPFDYGSGD 423
Score = 49 (22.3 bits), Expect = 1.7e-156, Sum P(4) = 1.7e-156
Identities = 12/40 (30%), Positives = 22/40 (55%)
Query: 1323 NDMLGSVKATEWNEETTEDQAESPVAAVDDASAENSERKE 1362
ND S + EW +E +++Q+E + + +D + ER E
Sbjct: 1215 ND--ASQEDQEWQDELSDNQSEYSIGS-EDEDEDFEERPE 1251
Score = 45 (20.9 bits), Expect = 4.7e-141, Sum P(4) = 4.7e-141
Identities = 19/84 (22%), Positives = 34/84 (40%)
Query: 503 TKECKGENAIDLLREDDKDSDPVAVNGKVQDESAVSTEDLGERNDKMVVEDADVSLRDNE 562
TKE KG +R+ K S GK + + + G N + ++ R+
Sbjct: 107 TKEGKGPG----VRKKIKGSKDAKKKGKGRKVAGLKFRFGGISNKRKKGSSSEEDEREES 162
Query: 563 GLTVSEIHITCESTDKDVDVGKKT 586
L + IH + ++ +GKK+
Sbjct: 163 DLDSASIHSSSVRSEGSTALGKKS 186
Score = 40 (19.1 bits), Expect = 1.6e-140, Sum P(4) = 1.6e-140
Identities = 12/47 (25%), Positives = 22/47 (46%)
Query: 257 SEQNDEVPVEKHEKSSTNGSS-GIKFVLAIGASERDRKRKPEVKDED 302
S + DE + +S + SS + A+G + R++K + D D
Sbjct: 153 SSEEDEREESDLDSASIHSSSVRSEGSTALGKKSKRRRKKKRIDDGD 199
Score = 39 (18.8 bits), Expect = 1.6e-08, Sum P(3) = 1.6e-08
Identities = 6/18 (33%), Positives = 11/18 (61%)
Query: 1001 LSSIQAEYYRAMLTKNYQ 1018
+ +Q E Y ++ +NYQ
Sbjct: 389 VKELQLELYHTVMYRNYQ 406
Score = 38 (18.4 bits), Expect = 2.6e-140, Sum P(4) = 2.6e-140
Identities = 13/48 (27%), Positives = 19/48 (39%)
Query: 334 SKLHEKQRTNNDEVSASLCEVDVGTKGLDAQRKDELAEETTDPLDKSD 381
S E +R +D SAS+ V ++G A K +D D
Sbjct: 152 SSSEEDEREESDLDSASIHSSSVRSEGSTALGKKSKRRRKKKRIDDGD 199
Score = 38 (18.4 bits), Expect = 2.0e-42, Sum P(4) = 2.0e-42
Identities = 11/36 (30%), Positives = 18/36 (50%)
Query: 979 RRLKKDAMQNIPPKTERMVP-VELSSIQAEYYRAML 1013
R+LK D + +PP R+ +E+ A +A L
Sbjct: 1261 RQLKSDRDKPLPPLLARVGGNIEVLGFNARQRKAFL 1296
Score = 37 (18.1 bits), Expect = 4.1e-136, Sum P(4) = 4.1e-136
Identities = 7/28 (25%), Positives = 13/28 (46%)
Query: 723 DASEDELPRGKGDCQQSEIVALTEQPEE 750
D ++ P GK C E + +P++
Sbjct: 234 DPELEKAPEGKWSCPHCEKEGIQWEPKD 261
Score = 37 (18.1 bits), Expect = 4.1e-136, Sum P(4) = 4.1e-136
Identities = 9/42 (21%), Positives = 20/42 (47%)
Query: 699 EPALEKYSHLTDLFVQFERQTLKKDASEDELPRGKGDCQQSE 740
+P LEK E++ ++ + +D+ +G C++ E
Sbjct: 234 DPELEKAPEGKWSCPHCEKEGIQWEPKDDDDEEEEGGCEEEE 275
>RGD|1582725 [details] [associations]
symbol:Chd5 "chromodomain helicase DNA binding protein 5"
species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR002464 InterPro:IPR012957 InterPro:IPR012958
InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271 Pfam:PF00628
Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 RGD:1582725 GO:GO:0005524
GO:GO:0005634 GO:GO:0006355 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 InterPro:IPR019786
PROSITE:PS01359 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR023780 GeneTree:ENSGT00560000076896 InterPro:IPR009462
InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465 OrthoDB:EOG4WH8JX
IPI:IPI00948282 Ensembl:ENSRNOT00000067364 UCSC:RGD:1582725
ArrayExpress:D4A5U0 Uniprot:D4A5U0
Length = 1940
Score = 1273 (453.2 bits), Expect = 2.9e-156, Sum P(4) = 2.9e-156
Identities = 295/623 (47%), Positives = 394/623 (63%)
Query: 753 GGALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLV 812
GG L P+QLE LNWLR W + + ILADEMGLGKTV F+ SLY E +K P LV
Sbjct: 695 GGTLHPYQLEGLNWLRFSWAQGTDTILADEMGLGKTVQTIVFLYSLYKEGHSKGPYLVSA 754
Query: 813 PLSTMPNWLAEFALWAPNLNVVEYHGCAKARAIIRQYEWHASDPDNLN-------KKTSS 865
PLST+ NW EF +WAP+ VV Y G ++R++IR+ E+ D KK
Sbjct: 755 PLSTIINWEREFEMWAPDFYVVTYTGDKESRSVIRENEFSFEDNAIRGGKKVFRMKKEVQ 814
Query: 866 YKFNVLLTTYEMILADSSHLRGVPWEVLVVDEGHRXXXXXXXXXXXXXXXXXQHRVLLTG 925
KF+VLLT+YE+I D + L + W LVVDE HR +++LLTG
Sbjct: 815 IKFHVLLTSYELITIDQAILGSIEWACLVVDEAHRLKNNQSKFFRVLNSYKIDYKLLLTG 874
Query: 926 TPLQNNIGEMYNLLNFLQPASFPSLSSFEEKFNDLTTTQKVEELKKLVAPHMLRRLKKDA 985
TPLQNN+ E+++LLNFL P F +L F E+F D++ ++++L L+ PHMLRRLK D
Sbjct: 875 TPLQNNLEELFHLLNFLTPERFNNLEGFLEEFADISKEDQIKKLHDLLGPHMLRRLKADV 934
Query: 986 MQNIPPKTERMVPVELSSIQAEYYRAMLTKNYQILRNIGKGVAQQSMLNIVMQLRKVCNH 1045
+N+P KTE +V VELS +Q +YY+ +LT+N++ L + G G Q S+LNI+M L+K CNH
Sbjct: 935 FKNMPAKTELIVRVELSQMQKKYYKFILTRNFEALNSKGGG-NQVSLLNIMMDLKKCCNH 993
Query: 1046 PYLIP--GTE-PDSGSVEFLHEMRIKASAKLTLLHSMLKVLYKEGHRVLIFSQMTKLLDI 1102
PYL P E P + + +K+S KL LL MLK L EGHRVLIFSQMTK+LD+
Sbjct: 994 PYLFPVAAVEAPMLPNGSYDGSSLVKSSGKLMLLQKMLKKLRDEGHRVLIFSQMTKMLDL 1053
Query: 1103 LEDYLNIEFGPKTYERVDGSVSVGDRQAAITRFNQDKSR-FVFLLSTRSCGLGINLATAD 1161
LED+L E G K YER+DG ++ G RQ AI RFN ++ F FLLSTR+ GLGINLATAD
Sbjct: 1054 LEDFLEYE-GYK-YERIDGGITGGLRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATAD 1111
Query: 1162 TVIIYDSDFNPHADIQAMNRAHRIGQSKRLLVYRLVVRASVEERILQLAKKKLMLDQLFV 1221
TVIIYDSD+NPH DIQA +RAHRIGQ+K++++YR V RASVEERI Q+AK+K+ML L V
Sbjct: 1112 TVIIYDSDWNPHNDIQAFSRAHRIGQNKKVMIYRFVTRASVEERITQVAKRKMMLTHLVV 1171
Query: 1222 -----NKSGS--QKEVEDILRWGTEELFNDSPGINGK-DMGENNTSIEEAVRD-----LE 1268
+KSGS ++E++DIL++GTEELF D + G G+ T+ V+ L
Sbjct: 1172 RPGLGSKSGSMTKQELDDILKFGTEELFKDD--VEGMMSQGQRPTTPIPDVQSTKGGSLA 1229
Query: 1269 QKHRKRGGGL--GDVYQDKCTEGSTKIVWDENAIARLLDRSNLQSGSTDLAEGDLENDML 1326
+K+ GG GD +K E S+ I +D+ AI++LLDR+ + T+L N+ L
Sbjct: 1230 AGAKKKHGGTPPGD---NKDVEDSSVIHYDDAAISKLLDRNQDATDDTELQN---MNEYL 1283
Query: 1327 GSVKATEW--NEETTEDQAESPV 1347
S K ++ EE ++ E V
Sbjct: 1284 SSFKVAQYVVREEDGVEEVEREV 1306
Score = 345 (126.5 bits), Expect = 2.0e-45, Sum P(5) = 2.0e-45
Identities = 84/210 (40%), Positives = 115/210 (54%)
Query: 661 WKQPQRVISLRSSKDGTREAFVKWTGLPYDECTWEKLDEPALEKYSHLTDLFVQFERQTL 720
W R+++ K G +KW LPYD+CTWE +DE + Y +L + L
Sbjct: 589 WMMVHRILNHSFDKKGDVHYLIKWKDLPYDQCTWE-IDEIDIPYYDNLKQTYWGHRELML 647
Query: 721 KKDASEDE--LPRGK---GDCQQ----SEIVALT----EQPEELK--GGALFPHQLEALN 765
+DA + + +GK D Q+ + IV T +QP + GG L P+QLE LN
Sbjct: 648 GEDARLPKRLVKKGKKLKDDKQEKPPDTPIVDPTVKFDKQPWYIDSTGGTLHPYQLEGLN 707
Query: 766 WLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLSTMPNWLAEFA 825
WLR W + + ILADEMGLGKTV F+ SLY E +K P LV PLST+ NW EF
Sbjct: 708 WLRFSWAQGTDTILADEMGLGKTVQTIVFLYSLYKEGHSKGPYLVSAPLSTIINWEREFE 767
Query: 826 LWAPNLNVVEYHGCAKARAIIRQYEWHASD 855
+WAP+ VV Y G ++R++IR+ E+ D
Sbjct: 768 MWAPDFYVVTYTGDKESRSVIRENEFSFED 797
Score = 196 (74.1 bits), Expect = 2.9e-156, Sum P(4) = 2.9e-156
Identities = 40/95 (42%), Positives = 54/95 (56%)
Query: 40 VTSESPRNTPSAKRRLKNEINADRSSTKKKGNDGYYYE------CVICDLGGNLLCCDSC 93
+ S S R+ SA KN+ R KK+ +DG YE C +C GG ++ CD+C
Sbjct: 304 IHSSSVRSECSAALGKKNK----RRRKKKRIDDGDGYETDHQDYCEVCQQGGEIILCDTC 359
Query: 94 PRTYHLQCLDPPLKRIPNGKWQCPKCTQKNDQLKP 128
PR YHL CLDP L++ P GKW CP C ++ Q +P
Sbjct: 360 PRAYHLVCLDPELEKAPEGKWSCPHCEKEGIQWEP 394
Score = 191 (72.3 bits), Expect = 9.8e-156, Sum P(4) = 9.8e-156
Identities = 30/65 (46%), Positives = 42/65 (64%)
Query: 56 KNEINADRSSTKKKGNDGYYYECVICDLGGNLLCCDSCPRTYHLQCLDPPLKRIPNGKWQ 115
K++ + ++ D + C +C GG LLCCD+CP +YHL CL+PPL IPNG+W
Sbjct: 395 KDDDEEEEEGGCEEEEDDHMEFCRVCKDGGELLCCDACPSSYHLHCLNPPLPEIPNGEWL 454
Query: 116 CPKCT 120
CP+CT
Sbjct: 455 CPRCT 459
Score = 84 (34.6 bits), Expect = 2.9e-156, Sum P(4) = 2.9e-156
Identities = 25/59 (42%), Positives = 30/59 (50%)
Query: 678 REAFVKWTGLPYDECTWEKLDEPALEKYSHLTDLFVQFERQTLKKDASEDE-LPRGKGD 735
RE FVKW GL Y C+W K E LE Y H T ++ ++R K D E G GD
Sbjct: 507 REFFVKWAGLSYWHCSWVK--ELQLELY-H-TVMYRNYQR---KNDMDEPPPFDYGSGD 558
Score = 81 (33.6 bits), Expect = 6.0e-156, Sum P(4) = 6.0e-156
Identities = 19/53 (35%), Positives = 26/53 (49%)
Query: 596 EPAVTESAQVKGKAVSYEFLVKWVGKSNIHNSWIPESQLKVLAKRKLENYKAK 648
EP + ++G EF VKW G S H SW+ E QL++ NY+ K
Sbjct: 492 EPGMPPPRPLEG-IPEREFFVKWAGLSYWHCSWVKELQLELYHTVMYRNYQRK 543
Score = 62 (26.9 bits), Expect = 2.0e-45, Sum P(5) = 2.0e-45
Identities = 28/118 (23%), Positives = 57/118 (48%)
Query: 925 GTPLQNNIG-EMYNLLNFLQPASFPSLSSFEEKFNDLTTTQKVEE-LKKL-VAPHMLRRL 981
GTP +N E +++++ A+ L + D T Q + E L VA +++R
Sbjct: 1238 GTPPGDNKDVEDSSVIHY-DDAAISKLLDRNQDATDDTELQNMNEYLSSFKVAQYVVR-- 1294
Query: 982 KKDAMQNIPPKTERMVPVELSSIQAEYYRAMLTKNYQ-----ILRNIGKGVAQQSMLN 1034
++D ++ + ER V + ++ +Y+ +L +Y+ + RN+GKG + +N
Sbjct: 1295 EEDGVEEV----EREVIKQEENVDPDYWEKLLRHHYEQQQEDLARNLGKGKRIRKQVN 1348
Score = 53 (23.7 bits), Expect = 3.6e-144, Sum P(5) = 3.6e-144
Identities = 15/48 (31%), Positives = 19/48 (39%)
Query: 474 SSDEECMKNDIGVDRIQVYRRSVTKECKVTKECKGENAIDLLREDDKD 521
SS EE D +D ++ SV EC K + R DD D
Sbjct: 287 SSSEEDEPEDSDLDNASIHSSSVRSECSAALGKKNKRRRKKKRIDDGD 334
Score = 49 (22.3 bits), Expect = 2.9e-156, Sum P(4) = 2.9e-156
Identities = 12/40 (30%), Positives = 22/40 (55%)
Query: 1323 NDMLGSVKATEWNEETTEDQAESPVAAVDDASAENSERKE 1362
ND S + EW +E +++Q+E + + +D + ER E
Sbjct: 1350 ND--ASQEDQEWQDELSDNQSEYSIGS-EDEDEDFEERPE 1386
Score = 44 (20.5 bits), Expect = 3.6e-144, Sum P(5) = 3.6e-144
Identities = 16/54 (29%), Positives = 26/54 (48%)
Query: 256 KSEQNDEVPVEKH---EKSSTNGS--SGIKFVLAIGASERDRKRKPEVKDEDSQ 304
K NDE+ + EKS + GS S K ++++K K + +DED +
Sbjct: 67 KEGSNDELSENEEDLEEKSESEGSDYSPTKKKKKKLKEKKEKKAKRKKRDEDEE 120
Score = 43 (20.2 bits), Expect = 4.6e-144, Sum P(5) = 4.6e-144
Identities = 14/56 (25%), Positives = 31/56 (55%)
Query: 19 KRKRRKLPCGPGLSNGKEENLVTSESPRN--TPSAKRRLKNEINADRSSTKKKGND 72
KRK+++ LS +E+ SES + +P+ K++ K + ++ + +KK ++
Sbjct: 63 KRKKKE-GSNDELSENEEDLEEKSESEGSDYSPTKKKKKKLKEKKEKKAKRKKRDE 117
Score = 41 (19.5 bits), Expect = 8.2e-143, Sum P(5) = 8.2e-143
Identities = 12/47 (25%), Positives = 22/47 (46%)
Query: 257 SEQNDEVPVEKHEKSSTNGSS-GIKFVLAIGASERDRKRKPEVKDED 302
S + DE + +S + SS + A+G + R++K + D D
Sbjct: 288 SSEEDEPEDSDLDNASIHSSSVRSECSAALGKKNKRRRKKKRIDDGD 334
Score = 39 (18.8 bits), Expect = 1.1e-142, Sum P(5) = 1.1e-142
Identities = 9/32 (28%), Positives = 17/32 (53%)
Query: 360 GLDAQRKDELAEETTDPLDKS-DKAGVHVNEI 390
G+ ++K +EE +P D D A +H + +
Sbjct: 279 GISKRKKGSSSEED-EPEDSDLDNASIHSSSV 309
Score = 39 (18.8 bits), Expect = 7.0e-133, Sum P(3) = 7.0e-133
Identities = 11/33 (33%), Positives = 16/33 (48%)
Query: 721 KKDASEDELPRGKGDCQQ-SEIVALTEQPEELK 752
KK+ S DEL + D ++ SE P + K
Sbjct: 66 KKEGSNDELSENEEDLEEKSESEGSDYSPTKKK 98
Score = 39 (18.8 bits), Expect = 8.0e-09, Sum P(3) = 8.0e-09
Identities = 6/18 (33%), Positives = 11/18 (61%)
Query: 1001 LSSIQAEYYRAMLTKNYQ 1018
+ +Q E Y ++ +NYQ
Sbjct: 524 VKELQLELYHTVMYRNYQ 541
Score = 38 (18.4 bits), Expect = 2.4e-139, Sum P(5) = 2.4e-139
Identities = 9/42 (21%), Positives = 20/42 (47%)
Query: 699 EPALEKYSHLTDLFVQFERQTLKKDASEDELPRGKGDCQQSE 740
+P LEK E++ ++ + +D+ +G C++ E
Sbjct: 369 DPELEKAPEGKWSCPHCEKEGIQWEPKDDDEEEEEGGCEEEE 410
Score = 38 (18.4 bits), Expect = 2.4e-139, Sum P(5) = 2.4e-139
Identities = 12/52 (23%), Positives = 21/52 (40%)
Query: 723 DASEDELPRGKGDCQQSEIVALTEQP----EELKGGALFPHQLEALNWLRKC 770
D ++ P GK C E + +P EE + G + + + + R C
Sbjct: 369 DPELEKAPEGKWSCPHCEKEGIQWEPKDDDEEEEEGGCEEEEDDHMEFCRVC 420
Score = 38 (18.4 bits), Expect = 8.5e-43, Sum P(4) = 8.5e-43
Identities = 11/36 (30%), Positives = 18/36 (50%)
Query: 979 RRLKKDAMQNIPPKTERMVP-VELSSIQAEYYRAML 1013
R+LK D + +PP R+ +E+ A +A L
Sbjct: 1396 RQLKSDRDKPLPPLLARVGGNIEVLGFNARQRKAFL 1431
Score = 37 (18.1 bits), Expect = 1.9e-143, Sum P(5) = 1.9e-143
Identities = 8/18 (44%), Positives = 11/18 (61%)
Query: 367 DELAEETTDPLDKSDKAG 384
DEL+E D +KS+ G
Sbjct: 72 DELSENEEDLEEKSESEG 89
>RGD|1311923 [details] [associations]
symbol:Chd3 "chromodomain helicase DNA binding protein 3"
species:10116 "Rattus norvegicus" [GO:0005634 "nucleus"
evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0005813 "centrosome" evidence=ISO]
[GO:0006333 "chromatin assembly or disassembly" evidence=ISO]
[GO:0007051 "spindle organization" evidence=ISO] [GO:0016581 "NuRD
complex" evidence=ISO] [GO:0045111 "intermediate filament
cytoskeleton" evidence=ISO] [GO:0051297 "centrosome organization"
evidence=ISO] InterPro:IPR001841 InterPro:IPR009071
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
InterPro:IPR001965 InterPro:IPR002464 InterPro:IPR012957
InterPro:IPR012958 InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271
Pfam:PF00628 Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690
PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184
SMART:SM00249 SMART:SM00298 SMART:SM00490 Pfam:PF00385 RGD:1311923
GO:GO:0005524 GO:GO:0005634 GO:GO:0006355 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 Gene3D:1.10.30.10 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR023780 InterPro:IPR009462
InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465 HOVERGEN:HBG005326
IPI:IPI00369880 EMBL:AY903245 EMBL:AY903246 UniGene:Rn.232095
STRING:Q2KML1 UCSC:RGD:1311923 Genevestigator:Q2KML1 Uniprot:Q2KML1
Length = 1925
Score = 1201 (427.8 bits), Expect = 9.9e-156, Sum P(6) = 9.9e-156
Identities = 265/541 (48%), Positives = 356/541 (65%)
Query: 753 GGALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLV 812
GG L +QLE LNWLR W + + ILADEMGLGKT+ F+ SLY E K P LV
Sbjct: 689 GGTLHMYQLEGLNWLRFSWAQGTDTILADEMGLGKTIQTIVFLYSLYKEGHTKGPFLVSA 748
Query: 813 PLSTMPNWLAEFALWAPNLNVVEYHGCAKARAIIRQYEWHASDPDNLN-------KKTSS 865
PLST+ NW EF +WAP VV Y G +RAIIR+ E+ D K+ +
Sbjct: 749 PLSTIINWEREFQMWAPKFYVVTYTGDKDSRAIIRENEFSFEDNAIKGGKKAFKMKREAQ 808
Query: 866 YKFNVLLTTYEMILADSSHLRGVPWEVLVVDEGHRXXXXXXXXXXXXXXXXXQHRVLLTG 925
KF+VLLT+YE+I D + L + W LVVDE HR H++LLTG
Sbjct: 809 VKFHVLLTSYELITIDQAALGSIRWACLVVDEAHRLKNNQSKFFRVLNGYKIDHKLLLTG 868
Query: 926 TPLQNNIGEMYNLLNFLQPASFPSLSSFEEKFNDLTTTQKVEELKKLVAPHMLRRLKKDA 985
TPLQNN+ E+++LLNFL P F +L F E+F D++ ++++L L+ PHMLRRLK D
Sbjct: 869 TPLQNNLEELFHLLNFLTPERFNNLEGFLEEFADISKEDQIKKLHDLLGPHMLRRLKADV 928
Query: 986 MQNIPPKTERMVPVELSSIQAEYYRAMLTKNYQILRNIGKGVAQQSMLNIVMQLRKVCNH 1045
+N+P KTE +V VELS +Q +YY+ +LT+N++ L + G G Q S+LNI+M L+K CNH
Sbjct: 929 FKNMPAKTELIVRVELSPMQKKYYKYILTRNFEALNSRGGG-NQVSLLNIMMDLKKCCNH 987
Query: 1046 PYLIPGTEPDSGSVEF-LHE--MRIKASAKLTLLHSMLKVLYKEGHRVLIFSQMTKLLDI 1102
PYL P +S + +E IK+S KL LL ML+ L ++GHRVLIFSQMTK+LD+
Sbjct: 988 PYLFPVAAMESPKLPSGAYEGGALIKSSGKLLLLQKMLRKLKEQGHRVLIFSQMTKMLDL 1047
Query: 1103 LEDYLNIEFGPKTYERVDGSVSVGDRQAAITRFNQDKSR-FVFLLSTRSCGLGINLATAD 1161
LED+L+ E G K YER+DG ++ RQ AI RFN ++ F FLLSTR+ GLGINLATAD
Sbjct: 1048 LEDFLDYE-GYK-YERIDGGITGALRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATAD 1105
Query: 1162 TVIIYDSDFNPHADIQAMNRAHRIGQSKRLLVYRLVVRASVEERILQLAKKKLMLDQLFV 1221
TVII+DSD+NPH DIQA +RAHRIGQ+ ++++YR V RASVEERI Q+AK+K+ML L V
Sbjct: 1106 TVIIFDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTRASVEERITQVAKRKMMLTHLVV 1165
Query: 1222 -----NKSGS--QKEVEDILRWGTEELFNDSPGINGKDMGENNTSIE---EAVRDLEQKH 1271
+K+GS ++E++DIL++GTEELF D G++ E+++ I EA+ L ++
Sbjct: 1166 RPGLGSKAGSMSKQELDDILKFGTEELFKDEN--EGENKEEDSSVIHYDNEAIARLLDRN 1223
Query: 1272 R 1272
+
Sbjct: 1224 Q 1224
Score = 326 (119.8 bits), Expect = 8.5e-43, Sum P(6) = 8.5e-43
Identities = 80/207 (38%), Positives = 104/207 (50%)
Query: 661 WKQPQRVISLRSSKDGTREAFVKWTGLPYDECTWEKLDEPALEKYSHLTDLFVQFERQTL 720
W R+I+ K G VKW LPYD+ TWE+ DE + +Y + + +
Sbjct: 586 WMTVHRIINHSMDKKGNYHYLVKWKDLPYDQSTWEE-DEMNIPEYDDHKQSYWRHRELIM 644
Query: 721 KKDASEDELPRGK-----GDCQQSE-----IVALTEQPEELK--GGALFPHQLEALNWLR 768
+D ++ + K GD S V QP + GG L +QLE LNWLR
Sbjct: 645 GEDPAQPRKYKKKKKEIQGDGPPSSPTNDPTVKYETQPRFITATGGTLHMYQLEGLNWLR 704
Query: 769 KCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLSTMPNWLAEFALWA 828
W + + ILADEMGLGKT+ F+ SLY E K P LV PLST+ NW EF +WA
Sbjct: 705 FSWAQGTDTILADEMGLGKTIQTIVFLYSLYKEGHTKGPFLVSAPLSTIINWEREFQMWA 764
Query: 829 PNLNVVEYHGCAKARAIIRQYEWHASD 855
P VV Y G +RAIIR+ E+ D
Sbjct: 765 PKFYVVTYTGDKDSRAIIRENEFSFED 791
Score = 182 (69.1 bits), Expect = 9.9e-156, Sum P(6) = 9.9e-156
Identities = 28/54 (51%), Positives = 38/54 (70%)
Query: 67 KKKGNDGYYYECVICDLGGNLLCCDSCPRTYHLQCLDPPLKRIPNGKWQCPKCT 120
+K+ D + C +C GG LLCCD+C +YH+ CL+PPL IPNG+W CP+CT
Sbjct: 404 EKEEEDDHMEYCRVCKDGGELLCCDACISSYHIHCLNPPLPDIPNGEWLCPRCT 457
Score = 181 (68.8 bits), Expect = 1.5e-151, Sum P(5) = 1.5e-151
Identities = 36/99 (36%), Positives = 54/99 (54%)
Query: 32 SNGKEENLVTSES-PRNTPSAKRRLKNEINADRSSTKKKGNDGYYYE----CVICDLGGN 86
++G+ + V ++ R P K K ++ + T ++ DGY + C +C GG
Sbjct: 291 ASGRPDGPVRAKKLKRGRPGRK---KKKVLGCPTVTGEEEVDGYETDHQDYCEVCQQGGE 347
Query: 87 LLCCDSCPRTYHLQCLDPPLKRIPNGKWQCPKCTQKNDQ 125
++ CD+CPR YHL CLDP L R P GKW CP C ++ Q
Sbjct: 348 IILCDTCPRAYHLVCLDPELDRAPEGKWSCPHCEKEGVQ 386
Score = 89 (36.4 bits), Expect = 9.9e-156, Sum P(6) = 9.9e-156
Identities = 29/73 (39%), Positives = 37/73 (50%)
Query: 664 PQRVISLRSSKDGTREAFVKWTGLPYDECTWEKLDEPALEKYSHLTDLFVQFERQTLKKD 723
P RV+ RS RE FVKW GL Y C+W K E LE + HL ++ ++R K D
Sbjct: 494 PPRVLQGRSE----REFFVKWVGLSYWHCSWAK--ELQLEIF-HLV-MYRNYQR---KND 542
Query: 724 ASEDE-LPRGKGD 735
E L G G+
Sbjct: 543 MDEPPPLDYGSGE 555
Score = 82 (33.9 bits), Expect = 5.4e-155, Sum P(6) = 5.4e-155
Identities = 19/53 (35%), Positives = 27/53 (50%)
Query: 596 EPAVTESAQVKGKAVSYEFLVKWVGKSNIHNSWIPESQLKVLAKRKLENYKAK 648
+P ++G++ EF VKWVG S H SW E QL++ NY+ K
Sbjct: 489 DPDAPPPRVLQGRS-EREFFVKWVGLSYWHCSWAKELQLEIFHLVMYRNYQRK 540
Score = 70 (29.7 bits), Expect = 9.9e-156, Sum P(6) = 9.9e-156
Identities = 21/62 (33%), Positives = 32/62 (51%)
Query: 1288 EGSTKIVWDENAIARLLDRSNLQSGSTDLAEGDLENDMLGSVKATEW--NEETTEDQAES 1345
E S+ I +D AIARLLDR+ + TD+ N+ L S K ++ EE ++ E
Sbjct: 1204 EDSSVIHYDNEAIARLLDRNQDATDDTDVQN---MNEYLSSFKVAQYVVREEDKIEEIER 1260
Query: 1346 PV 1347
+
Sbjct: 1261 EI 1262
Score = 59 (25.8 bits), Expect = 7.3e-09, Sum P(4) = 7.3e-09
Identities = 36/126 (28%), Positives = 54/126 (42%)
Query: 156 GADKVSQIFGNSILARKRSNKGKSVLALGVKSLEKSLDSSQVDVSCS-TKPE---NTSAG 211
GAD S+ F + + R+ ++ + + +GV SL K ++ + PE + SA
Sbjct: 1423 GADG-SETFADGV-PREGLSRQQVLTRIGVMSLVKKKVQEFEHINGRWSMPELMPDPSAD 1480
Query: 212 VPVEGSSSCPNDDDEKQLNASPTDSLADTK-FHPAEEVLPHSQVTKSEQND-EVPVEKHE 269
+S P AS T+S +K PA T E++D E P EK E
Sbjct: 1481 SKRSSRASSPTKTSPTTPEASTTNSPCTSKPATPAPSEKGDGVRTLLEKDDTENPEEKPE 1540
Query: 270 KSSTNG 275
KSS G
Sbjct: 1541 KSSKVG 1546
Score = 56 (24.8 bits), Expect = 2.3e-41, Sum P(6) = 2.3e-41
Identities = 21/83 (25%), Positives = 42/83 (50%)
Query: 959 DLTTTQKVEE-LKKL-VAPHMLRRLKKDAMQNIPPKTERMVPVELSSIQAEYYRAMLTKN 1016
D T Q + E L VA +++R ++D ++ I ER + + ++ +Y+ +L +
Sbjct: 1228 DDTDVQNMNEYLSSFKVAQYVVR--EEDKIEEI----EREIIKQEENVDPDYWEKLLRHH 1281
Query: 1017 YQ-----ILRNIGKGVAQQSMLN 1034
Y+ + RN+GKG + +N
Sbjct: 1282 YEQQQEDLARNLGKGKRVRKQVN 1304
Score = 54 (24.1 bits), Expect = 9.9e-156, Sum P(6) = 9.9e-156
Identities = 16/58 (27%), Positives = 28/58 (48%)
Query: 20 RKRRKLPCGPGLSNGKEENLVTSESPRNT----PSAKRRLKNEINADRSSTKKKGNDG 73
RKR+KL + ++E SES + P KRR K+ ++ + ++K +G
Sbjct: 22 RKRKKLDSEEEFGSERDEYREKSESGGSEYGTGPGRKRRRKHREKREKKTKRRKRGEG 79
Score = 43 (20.2 bits), Expect = 6.4e-151, Sum P(6) = 6.4e-151
Identities = 16/68 (23%), Positives = 30/68 (44%)
Query: 599 VTESAQVKGKAVSYEFLVKWVGKSNIHNSWIPESQLKVLAKRKLENYKAKYGTTVINICD 658
+ S KG +Y +LVKW ++W E ++ + + +++K Y I
Sbjct: 593 INHSMDKKG---NYHYLVKWKDLPYDQSTW-EEDEMNI---PEYDDHKQSYWRHRELIMG 645
Query: 659 ERWKQPQR 666
E QP++
Sbjct: 646 EDPAQPRK 653
Score = 39 (18.8 bits), Expect = 9.9e-156, Sum P(6) = 9.9e-156
Identities = 8/23 (34%), Positives = 15/23 (65%)
Query: 1351 DDASAENSERKEENAVTGIEENE 1373
+DA+ E+ + + E +V EE+E
Sbjct: 1306 NDAAQEDQDNQSEYSVGSEEEDE 1328
Score = 37 (18.1 bits), Expect = 7.3e-09, Sum P(4) = 7.3e-09
Identities = 11/43 (25%), Positives = 24/43 (55%)
Query: 425 ATATDDRHSDDFLVSENHNKILEENLACDTDLDAEVTENLAEL 467
A A R ++ ++E+H + +E+LA + +A + + L +L
Sbjct: 1749 AMALHARFAEAECLAESHQHLSKESLAGNKPANAVLHKVLNQL 1791
Score = 37 (18.1 bits), Expect = 1.0e-06, Sum P(4) = 1.0e-06
Identities = 8/17 (47%), Positives = 9/17 (52%)
Query: 289 ERDRKRKPEVKDEDSQK 305
E+D PE K E S K
Sbjct: 1528 EKDDTENPEEKPEKSSK 1544
>UNIPROTKB|F1MFF9 [details] [associations]
symbol:Bt.62145 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012957 InterPro:IPR012958 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00628 Pfam:PF08073 Pfam:PF08074
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194
SMART:SM00184 SMART:SM00249 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR023780 GeneTree:ENSGT00560000076896
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
OMA:KRIDDGD EMBL:DAAA02043090 IPI:IPI00688794
Ensembl:ENSBTAT00000010688 Uniprot:F1MFF9
Length = 1852
Score = 1230 (438.0 bits), Expect = 1.0e-155, Sum P(5) = 1.0e-155
Identities = 266/523 (50%), Positives = 351/523 (67%)
Query: 753 GGALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLV 812
GG L P+QLE LNWLR W + + ILADEMGLGKTV F+ SLY E +K P LV
Sbjct: 643 GGTLHPYQLEGLNWLRFSWAQGTDTILADEMGLGKTVQTIVFLYSLYKEGHSKGPYLVSA 702
Query: 813 PLSTMPNWLAEFALWAPNLNVVEYHGCAKARAIIRQYEWHASDPDNLN-------KKTSS 865
PLST+ NW EF +WAP+ VV Y G ++R++IR+ E+ D + KK
Sbjct: 703 PLSTIINWEREFEMWAPDFYVVTYTGDKESRSVIRENEFSFEDNAIRSGKKVFRMKKEVQ 762
Query: 866 YKFNVLLTTYEMILADSSHLRGVPWEVLVVDEGHRXXXXXXXXXXXXXXXXXQHRVLLTG 925
KF+VLLT+YE+I D + L + W LVVDE HR +++LLTG
Sbjct: 763 IKFHVLLTSYELITIDQAILGSIEWACLVVDEAHRLKNNQSKFFRVLNSYKIDYKLLLTG 822
Query: 926 TPLQNNIGEMYNLLNFLQPASFPSLSSFEEKFNDLTTTQKVEELKKLVAPHMLRRLKKDA 985
TPLQNN+ E+++LLNFL P F +L F E+F D++ ++++L L+ PHMLRRLK D
Sbjct: 823 TPLQNNLEELFHLLNFLTPERFNNLEGFLEEFADISKEDQIKKLHDLLGPHMLRRLKADV 882
Query: 986 MQNIPPKTERMVPVELSSIQAEYYRAMLTKNYQILRNIGKGVAQQSMLNIVMQLRKVCNH 1045
+N+P KTE +V VELS +Q +YY+ +LT+N++ L + G G Q S+LNI+M L+K CNH
Sbjct: 883 FKNMPAKTELIVRVELSQMQKKYYKFILTRNFEALNSKGGG-NQVSLLNIMMDLKKCCNH 941
Query: 1046 PYLIP--GTE-PDSGSVEFLHEMRIKASAKLTLLHSMLKVLYKEGHRVLIFSQMTKLLDI 1102
PYL P E P + + +K+S KL LL MLK L EGHRVLIFSQMTK+LD+
Sbjct: 942 PYLFPVAAVEAPVLPNGSYDGSSLVKSSGKLMLLQKMLKKLRDEGHRVLIFSQMTKMLDL 1001
Query: 1103 LEDYLNIEFGPKTYERVDGSVSVGDRQAAITRFNQDKSR-FVFLLSTRSCGLGINLATAD 1161
LED+L E G K YER+DG ++ G RQ AI RFN ++ F FLLSTR+ GLGINLATAD
Sbjct: 1002 LEDFLEYE-GYK-YERIDGGITGGLRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATAD 1059
Query: 1162 TVIIYDSDFNPHADIQAMNRAHRIGQSKRLLVYRLVVRASVEERILQLAKKKLMLDQLFV 1221
TVIIYDSD+NPH DIQA +RAHRIGQ+K++++YR V RASVEERI Q+AK+K+ML L V
Sbjct: 1060 TVIIYDSDWNPHNDIQAFSRAHRIGQNKKVMIYRFVTRASVEERITQVAKRKMMLTHLVV 1119
Query: 1222 -----NKSGS--QKEVEDILRWGTEELFNDSPGINGKDMGENN 1257
+KSGS ++E++DIL++GTEELF D + KD+ +++
Sbjct: 1120 RPGLGSKSGSMTKQELDDILKFGTEELFKDDVEGDNKDVEDSS 1162
Score = 342 (125.4 bits), Expect = 1.4e-43, Sum P(5) = 1.4e-43
Identities = 84/210 (40%), Positives = 114/210 (54%)
Query: 661 WKQPQRVISLRSSKDGTREAFVKWTGLPYDECTWEKLDEPALEKYSHLTDLFVQFERQTL 720
W R+++ K G +KW LPYD+CTWE +DE + Y L + L
Sbjct: 537 WMMIHRILNHSFDKKGDVHYLIKWKDLPYDQCTWE-IDEIDIPYYDSLKQAYWGHRELML 595
Query: 721 KKDASEDE--LPRGK---GDCQQ----SEIVALT----EQPEELK--GGALFPHQLEALN 765
+DA + + +GK D Q+ + IV T +QP + GG L P+QLE LN
Sbjct: 596 GEDARLPKRLVKKGKKLKDDKQEKPPDTPIVDPTVKFDKQPWYIDSTGGTLHPYQLEGLN 655
Query: 766 WLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLSTMPNWLAEFA 825
WLR W + + ILADEMGLGKTV F+ SLY E +K P LV PLST+ NW EF
Sbjct: 656 WLRFSWAQGTDTILADEMGLGKTVQTIVFLYSLYKEGHSKGPYLVSAPLSTIINWEREFE 715
Query: 826 LWAPNLNVVEYHGCAKARAIIRQYEWHASD 855
+WAP+ VV Y G ++R++IR+ E+ D
Sbjct: 716 MWAPDFYVVTYTGDKESRSVIRENEFSFED 745
Score = 191 (72.3 bits), Expect = 1.0e-155, Sum P(5) = 1.0e-155
Identities = 30/59 (50%), Positives = 41/59 (69%)
Query: 62 DRSSTKKKGNDGYYYECVICDLGGNLLCCDSCPRTYHLQCLDPPLKRIPNGKWQCPKCT 120
D +++ +D + C +C GG LLCCD+CP +YHL CL+PPL IPNG+W CP+CT
Sbjct: 349 DEGGCEEEEDDHMEF-CRVCKDGGELLCCDACPSSYHLHCLNPPLPEIPNGEWLCPRCT 406
Score = 190 (71.9 bits), Expect = 1.3e-155, Sum P(5) = 1.3e-155
Identities = 33/83 (39%), Positives = 46/83 (55%)
Query: 50 SAKRRLKNEINADRSSTKKKGNDGYYYE----CVICDLGGNLLCCDSCPRTYHLQCLDPP 105
S +RR K + + DGY + C +C GG ++ CD+CPR YHL CLDP
Sbjct: 259 SKRRRKKKRNQGSPAHSPVDDGDGYETDHQDYCEVCQQGGEIILCDTCPRAYHLVCLDPE 318
Query: 106 LKRIPNGKWQCPKCTQKNDQLKP 128
L++ P GKW CP C ++ Q +P
Sbjct: 319 LEKAPEGKWSCPHCEKEGIQWEP 341
Score = 82 (33.9 bits), Expect = 1.0e-155, Sum P(5) = 1.0e-155
Identities = 24/59 (40%), Positives = 30/59 (50%)
Query: 678 REAFVKWTGLPYDECTWEKLDEPALEKYSHLTDLFVQFERQTLKKDASEDE-LPRGKGD 735
RE FVKW GL Y C+W K + LE Y H T ++ ++R K D E G GD
Sbjct: 454 REFFVKWAGLSYWHCSWVK-ELQQLELY-H-TVMYRNYQR---KNDMDEPPPFDYGSGD 506
Score = 74 (31.1 bits), Expect = 7.1e-155, Sum P(5) = 7.1e-155
Identities = 19/54 (35%), Positives = 26/54 (48%)
Query: 596 EPAVTESAQVKGKAVSYEFLVKWVGKSNIHNSWIPE-SQLKVLAKRKLENYKAK 648
+P V ++G EF VKW G S H SW+ E QL++ NY+ K
Sbjct: 439 DPGVPPPKPLEG-IPEREFFVKWAGLSYWHCSWVKELQQLELYHTVMYRNYQRK 491
Score = 69 (29.3 bits), Expect = 1.0e-155, Sum P(5) = 1.0e-155
Identities = 23/71 (32%), Positives = 37/71 (52%)
Query: 1280 DVYQD-KCTEGSTKIVWDENAIARLLDRSNLQSGSTDLAEGDLENDMLGSVKATEW--NE 1336
DV D K E S+ I +D+ AI++LLDR+ + T+L N+ L S K ++ E
Sbjct: 1150 DVEGDNKDVEDSSVIHYDDAAISKLLDRNQDATDDTELQN---MNEYLSSFKVAQYVVRE 1206
Query: 1337 ETTEDQAESPV 1347
E ++ E +
Sbjct: 1207 EDGVEEVEREI 1217
Score = 46 (21.3 bits), Expect = 5.6e-08, Sum P(3) = 5.6e-08
Identities = 38/177 (21%), Positives = 72/177 (40%)
Query: 395 DIVPFELQQV--DRVLGCRVKGDDTSSSCHISATATD---DRHSD--DFLVSENHNKILE 447
DI+ F +++ D V G +D SS H A DR+ D D +N N+ L
Sbjct: 1137 DILKFGTEELFKDDVEGDNKDVED-SSVIHYDDAAISKLLDRNQDATDDTELQNMNEYLS 1195
Query: 448 -----ENLACDTDLDAEVTENLAELSPNVIRSSDEECMKNDIGVDRIQVYRRSVTKECKV 502
+ + + D EV + + NV E+ +++ + + R++ K ++
Sbjct: 1196 SFKVAQYVVREEDGVEEVEREIIKQEENVDPDYWEKLLRHHYEQQQEDL-ARNLGKGKRI 1254
Query: 503 TKECKGENAIDLLREDDKDSDPVAVNGKVQDESAVSTEDLGERNDKMVVE-DADVSL 558
K+ N D +ED + ++ + +DE + G R + ++ D D L
Sbjct: 1255 RKQV---NYNDASQEDQDNQSEYSIGSEDEDEDFEERPEGGRRQSRRQLKSDRDKPL 1308
Score = 42 (19.8 bits), Expect = 4.3e-140, Sum P(5) = 4.3e-140
Identities = 12/44 (27%), Positives = 25/44 (56%)
Query: 31 LSNGKEENLVTSESPRN--TPSAKRRLKNEINADRSSTKKKGND 72
LS +E+ SES + +P+ K++ K + ++ + +KK +D
Sbjct: 5 LSENEEDLEEKSESEGSDYSPNKKKKKKLKDKKEKKAKRKKKDD 48
Score = 38 (18.4 bits), Expect = 1.0e-155, Sum P(5) = 1.0e-155
Identities = 7/23 (30%), Positives = 15/23 (65%)
Query: 1351 DDASAENSERKEENAVTGIEENE 1373
+DAS E+ + + E ++ +E+E
Sbjct: 1261 NDASQEDQDNQSEYSIGSEDEDE 1283
Score = 38 (18.4 bits), Expect = 1.7e-135, Sum P(5) = 1.7e-135
Identities = 9/42 (21%), Positives = 20/42 (47%)
Query: 699 EPALEKYSHLTDLFVQFERQTLKKDASEDELPRGKGDCQQSE 740
+P LEK E++ ++ + +D+ +G C++ E
Sbjct: 316 DPELEKAPEGKWSCPHCEKEGIQWEPKDDDDDEDEGGCEEEE 357
Score = 38 (18.4 bits), Expect = 2.4e-41, Sum P(4) = 2.4e-41
Identities = 11/36 (30%), Positives = 18/36 (50%)
Query: 979 RRLKKDAMQNIPPKTERMVP-VELSSIQAEYYRAML 1013
R+LK D + +PP R+ +E+ A +A L
Sbjct: 1298 RQLKSDRDKPLPPLLARVGGNIEVLGFNARQRKAFL 1333
Score = 37 (18.1 bits), Expect = 1.4e-139, Sum P(5) = 1.4e-139
Identities = 8/18 (44%), Positives = 11/18 (61%)
Query: 367 DELAEETTDPLDKSDKAG 384
DEL+E D +KS+ G
Sbjct: 3 DELSENEEDLEEKSESEG 20
Score = 37 (18.1 bits), Expect = 2.2e-135, Sum P(5) = 2.2e-135
Identities = 7/28 (25%), Positives = 13/28 (46%)
Query: 723 DASEDELPRGKGDCQQSEIVALTEQPEE 750
D ++ P GK C E + +P++
Sbjct: 316 DPELEKAPEGKWSCPHCEKEGIQWEPKD 343
>UNIPROTKB|Q8TDI0 [details] [associations]
symbol:CHD5 "Chromodomain-helicase-DNA-binding protein 5"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0016568 "chromatin
modification" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012957 InterPro:IPR012958 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00628 Pfam:PF08073 Pfam:PF08074
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194
SMART:SM00184 SMART:SM00249 SMART:SM00298 SMART:SM00490
EMBL:AF425231 Pfam:PF00385 GO:GO:0005524 GO:GO:0005634
GO:GO:0006355 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
GO:GO:0006351 GO:GO:0016568 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 InterPro:IPR019786
PROSITE:PS01359 InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 EMBL:AL031847
GO:GO:0008026 InterPro:IPR023780 PROSITE:PS00598
HOGENOM:HOG000231124 InterPro:IPR009462 InterPro:IPR009463
Pfam:PF06461 Pfam:PF06465 HOVERGEN:HBG005326 OrthoDB:EOG4WH8JX
EMBL:AL035406 EMBL:AL117491 EMBL:AB007913 IPI:IPI00152535
PIR:T17269 RefSeq:NP_056372.1 UniGene:Hs.522898
ProteinModelPortal:Q8TDI0 SMR:Q8TDI0 IntAct:Q8TDI0 STRING:Q8TDI0
PhosphoSite:Q8TDI0 DMDM:51701343 PaxDb:Q8TDI0 PRIDE:Q8TDI0
DNASU:26038 Ensembl:ENST00000262450 GeneID:26038 KEGG:hsa:26038
UCSC:uc001amb.2 CTD:26038 GeneCards:GC01M006096 HGNC:HGNC:16816
HPA:HPA015809 MIM:610771 neXtProt:NX_Q8TDI0 PharmGKB:PA134969178
InParanoid:Q8TDI0 KO:K14435 OMA:KRIDDGD PhylomeDB:Q8TDI0
ChiTaRS:CHD5 GenomeRNAi:26038 NextBio:47863 ArrayExpress:Q8TDI0
Bgee:Q8TDI0 CleanEx:HS_CHD5 Genevestigator:Q8TDI0
GermOnline:ENSG00000116254 Uniprot:Q8TDI0
Length = 1954
Score = 1267 (451.1 bits), Expect = 4.8e-155, Sum P(4) = 4.8e-155
Identities = 293/623 (47%), Positives = 394/623 (63%)
Query: 753 GGALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLV 812
GG L P+QLE LNWLR W + + ILADEMGLGKTV F+ SLY E +K P LV
Sbjct: 697 GGTLHPYQLEGLNWLRFSWAQGTDTILADEMGLGKTVQTIVFLYSLYKEGHSKGPYLVSA 756
Query: 813 PLSTMPNWLAEFALWAPNLNVVEYHGCAKARAIIRQYEWHASDPDNLN-------KKTSS 865
PLST+ NW EF +WAP+ VV Y G ++R++IR+ E+ D + KK
Sbjct: 757 PLSTIINWEREFEMWAPDFYVVTYTGDKESRSVIRENEFSFEDNAIRSGKKVFRMKKEVQ 816
Query: 866 YKFNVLLTTYEMILADSSHLRGVPWEVLVVDEGHRXXXXXXXXXXXXXXXXXQHRVLLTG 925
KF+VLLT+YE+I D + L + W LVVDE HR +++LLTG
Sbjct: 817 IKFHVLLTSYELITIDQAILGSIEWACLVVDEAHRLKNNQSKFFRVLNSYKIDYKLLLTG 876
Query: 926 TPLQNNIGEMYNLLNFLQPASFPSLSSFEEKFNDLTTTQKVEELKKLVAPHMLRRLKKDA 985
TPLQNN+ E+++LLNFL P F +L F E+F D++ ++++L L+ PHMLRRLK D
Sbjct: 877 TPLQNNLEELFHLLNFLTPERFNNLEGFLEEFADISKEDQIKKLHDLLGPHMLRRLKADV 936
Query: 986 MQNIPPKTERMVPVELSSIQAEYYRAMLTKNYQILRNIGKGVAQQSMLNIVMQLRKVCNH 1045
+N+P KTE +V VELS +Q +YY+ +LT+N++ L + G G Q S+LNI+M L+K CNH
Sbjct: 937 FKNMPAKTELIVRVELSQMQKKYYKFILTRNFEALNSKGGG-NQVSLLNIMMDLKKCCNH 995
Query: 1046 PYLIP--GTE-PDSGSVEFLHEMRIKASAKLTLLHSMLKVLYKEGHRVLIFSQMTKLLDI 1102
PYL P E P + + +K+S KL LL MLK L EGHRVLIFSQMTK+LD+
Sbjct: 996 PYLFPVAAVEAPVLPNGSYDGSSLVKSSGKLMLLQKMLKKLRDEGHRVLIFSQMTKMLDL 1055
Query: 1103 LEDYLNIEFGPKTYERVDGSVSVGDRQAAITRFNQDKSR-FVFLLSTRSCGLGINLATAD 1161
LED+L E G K YER+DG ++ G RQ AI RFN ++ F FLLSTR+ GLGINLATAD
Sbjct: 1056 LEDFLEYE-GYK-YERIDGGITGGLRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATAD 1113
Query: 1162 TVIIYDSDFNPHADIQAMNRAHRIGQSKRLLVYRLVVRASVEERILQLAKKKLMLDQLFV 1221
TVIIYDSD+NPH DIQA +RAHRIGQ+K++++YR V RASVEERI Q+AK+K+ML L V
Sbjct: 1114 TVIIYDSDWNPHNDIQAFSRAHRIGQNKKVMIYRFVTRASVEERITQVAKRKMMLTHLVV 1173
Query: 1222 -----NKSGS--QKEVEDILRWGTEELFNDSPGINGK-DMGENN-TSIEEAVR----DLE 1268
+KSGS ++E++DIL++GTEELF D + G G+ T I + +L
Sbjct: 1174 RPGLGSKSGSMTKQELDDILKFGTEELFKDD--VEGMMSQGQRPVTPIPDVQSSKGGNLA 1231
Query: 1269 QKHRKRGGGL--GDVYQDKCTEGSTKIVWDENAIARLLDRSNLQSGSTDLAEGDLENDML 1326
+K+ G GD +K E S+ I +D+ AI++LLDR+ + T+L N+ L
Sbjct: 1232 ASAKKKHGSTPPGD---NKDVEDSSVIHYDDAAISKLLDRNQDATDDTELQN---MNEYL 1285
Query: 1327 GSVKATEW--NEETTEDQAESPV 1347
S K ++ EE ++ E +
Sbjct: 1286 SSFKVAQYVVREEDGVEEVEREI 1308
Score = 340 (124.7 bits), Expect = 4.5e-43, Sum P(4) = 4.5e-43
Identities = 83/210 (39%), Positives = 114/210 (54%)
Query: 661 WKQPQRVISLRSSKDGTREAFVKWTGLPYDECTWEKLDEPALEKYSHLTDLFVQFERQTL 720
W R+++ K G +KW LPYD+CTWE +D+ + Y +L + L
Sbjct: 591 WMMIHRILNHSFDKKGDVHYLIKWKDLPYDQCTWE-IDDIDIPYYDNLKQAYWGHRELML 649
Query: 721 KKDASEDE--LPRGK---GDCQQ----SEIVALT----EQPEELK--GGALFPHQLEALN 765
+D + L +GK D Q+ + IV T +QP + GG L P+QLE LN
Sbjct: 650 GEDTRLPKRLLKKGKKLRDDKQEKPPDTPIVDPTVKFDKQPWYIDSTGGTLHPYQLEGLN 709
Query: 766 WLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLSTMPNWLAEFA 825
WLR W + + ILADEMGLGKTV F+ SLY E +K P LV PLST+ NW EF
Sbjct: 710 WLRFSWAQGTDTILADEMGLGKTVQTIVFLYSLYKEGHSKGPYLVSAPLSTIINWEREFE 769
Query: 826 LWAPNLNVVEYHGCAKARAIIRQYEWHASD 855
+WAP+ VV Y G ++R++IR+ E+ D
Sbjct: 770 MWAPDFYVVTYTGDKESRSVIRENEFSFED 799
Score = 192 (72.6 bits), Expect = 4.8e-155, Sum P(4) = 4.8e-155
Identities = 30/65 (46%), Positives = 43/65 (66%)
Query: 56 KNEINADRSSTKKKGNDGYYYECVICDLGGNLLCCDSCPRTYHLQCLDPPLKRIPNGKWQ 115
K++ + + ++ D + C +C GG LLCCD+CP +YHL CL+PPL IPNG+W
Sbjct: 397 KDDDDEEEEGGCEEEEDDHMEFCRVCKDGGELLCCDACPSSYHLHCLNPPLPEIPNGEWL 456
Query: 116 CPKCT 120
CP+CT
Sbjct: 457 CPRCT 461
Score = 190 (71.9 bits), Expect = 7.8e-155, Sum P(4) = 7.8e-155
Identities = 39/95 (41%), Positives = 54/95 (56%)
Query: 40 VTSESPRNTPSAKRRLKNEINADRSSTKKKGNDGYYYE------CVICDLGGNLLCCDSC 93
+ S S R+ SA K++ R KK+ +DG YE C +C GG ++ CD+C
Sbjct: 306 IHSASVRSECSAALGKKSK----RRRKKKRIDDGDGYETDHQDYCEVCQQGGEIILCDTC 361
Query: 94 PRTYHLQCLDPPLKRIPNGKWQCPKCTQKNDQLKP 128
PR YHL CLDP L++ P GKW CP C ++ Q +P
Sbjct: 362 PRAYHLVCLDPELEKAPEGKWSCPHCEKEGIQWEP 396
Score = 84 (34.6 bits), Expect = 4.8e-155, Sum P(4) = 4.8e-155
Identities = 25/59 (42%), Positives = 30/59 (50%)
Query: 678 REAFVKWTGLPYDECTWEKLDEPALEKYSHLTDLFVQFERQTLKKDASEDE-LPRGKGD 735
RE FVKW GL Y C+W K E LE Y H T ++ ++R K D E G GD
Sbjct: 509 REFFVKWAGLSYWHCSWVK--ELQLELY-H-TVMYRNYQR---KNDMDEPPPFDYGSGD 560
Score = 82 (33.9 bits), Expect = 7.8e-155, Sum P(4) = 7.8e-155
Identities = 19/53 (35%), Positives = 27/53 (50%)
Query: 596 EPAVTESAQVKGKAVSYEFLVKWVGKSNIHNSWIPESQLKVLAKRKLENYKAK 648
EP++ ++G EF VKW G S H SW+ E QL++ NY+ K
Sbjct: 494 EPSLPPPKPLEG-IPEREFFVKWAGLSYWHCSWVKELQLELYHTVMYRNYQRK 545
Score = 49 (22.3 bits), Expect = 4.8e-155, Sum P(4) = 4.8e-155
Identities = 12/40 (30%), Positives = 22/40 (55%)
Query: 1323 NDMLGSVKATEWNEETTEDQAESPVAAVDDASAENSERKE 1362
ND S + EW +E +++Q+E + + +D + ER E
Sbjct: 1352 ND--ASQEDQEWQDELSDNQSEYSIGS-EDEDEDFEERPE 1388
Score = 49 (22.3 bits), Expect = 2.5e-143, Sum P(5) = 2.5e-143
Identities = 14/48 (29%), Positives = 19/48 (39%)
Query: 474 SSDEECMKNDIGVDRIQVYRRSVTKECKVTKECKGENAIDLLREDDKD 521
SS EE + + D ++ SV EC K + R DD D
Sbjct: 289 SSSEEDEREESDFDSASIHSASVRSECSAALGKKSKRRRKKKRIDDGD 336
Score = 48 (22.0 bits), Expect = 2.5e-143, Sum P(5) = 2.5e-143
Identities = 24/112 (21%), Positives = 48/112 (42%)
Query: 205 PENTSAGVPVEGSSSCPNDDDEKQLNASPTDSLADTKFHPAEEV-LPHSQVTKSEQNDEV 263
P T +P + N+D+ + ++ D F P E V LP + K + ++
Sbjct: 4 PVGTEEELPRLFAEEMENEDEMSEEEDGGLEAFDD--FFPVEPVSLPKKKKPKKLKENKC 61
Query: 264 PVEKHEKSSTNG--SSGIKFVLAIGASER-----DRKRKPEVKDEDSQKKLR 308
++ +K +N S + + SE ++K+K ++KD+ +K R
Sbjct: 62 KGKRKKKEGSNDELSENEEDLEEKSESEGSDYSPNKKKKKKLKDKKEKKAKR 113
Score = 44 (20.5 bits), Expect = 6.5e-143, Sum P(5) = 6.5e-143
Identities = 13/44 (29%), Positives = 23/44 (52%)
Query: 259 QNDEVPVEKHEKSSTNGSSGIKFVLAIGASERDRKRKPEVKDED 302
+N+E EK E ++ S K + ++++K K + KDED
Sbjct: 77 ENEEDLEEKSESEGSDYSPNKKKKKKL-KDKKEKKAKRKKKDED 119
Score = 43 (20.2 bits), Expect = 8.3e-143, Sum P(5) = 8.3e-143
Identities = 14/56 (25%), Positives = 31/56 (55%)
Query: 19 KRKRRKLPCGPGLSNGKEENLVTSESPRN--TPSAKRRLKNEINADRSSTKKKGND 72
KRK+++ LS +E+ SES + +P+ K++ K + ++ + +KK ++
Sbjct: 64 KRKKKE-GSNDELSENEEDLEEKSESEGSDYSPNKKKKKKLKDKKEKKAKRKKKDE 118
Score = 40 (19.1 bits), Expect = 7.2e-142, Sum P(5) = 7.2e-142
Identities = 11/47 (23%), Positives = 22/47 (46%)
Query: 257 SEQNDEVPVEKHEKSSTNGSS-GIKFVLAIGASERDRKRKPEVKDED 302
S + DE + +S + +S + A+G + R++K + D D
Sbjct: 290 SSEEDEREESDFDSASIHSASVRSECSAALGKKSKRRRKKKRIDDGD 336
Score = 40 (19.1 bits), Expect = 3.2e-132, Sum P(3) = 3.2e-132
Identities = 11/33 (33%), Positives = 16/33 (48%)
Query: 721 KKDASEDELPRGKGDCQQ-SEIVALTEQPEELK 752
KK+ S DEL + D ++ SE P + K
Sbjct: 67 KKEGSNDELSENEEDLEEKSESEGSDYSPNKKK 99
Score = 39 (18.8 bits), Expect = 2.1e-08, Sum P(3) = 2.1e-08
Identities = 6/18 (33%), Positives = 11/18 (61%)
Query: 1001 LSSIQAEYYRAMLTKNYQ 1018
+ +Q E Y ++ +NYQ
Sbjct: 526 VKELQLELYHTVMYRNYQ 543
Score = 38 (18.4 bits), Expect = 6.2e-42, Sum P(4) = 6.2e-42
Identities = 11/36 (30%), Positives = 18/36 (50%)
Query: 979 RRLKKDAMQNIPPKTERMVP-VELSSIQAEYYRAML 1013
R+LK D + +PP R+ +E+ A +A L
Sbjct: 1398 RQLKSDRDKPLPPLLARVGGNIEVLGFNARQRKAFL 1433
Score = 37 (18.1 bits), Expect = 3.5e-142, Sum P(5) = 3.5e-142
Identities = 8/18 (44%), Positives = 11/18 (61%)
Query: 367 DELAEETTDPLDKSDKAG 384
DEL+E D +KS+ G
Sbjct: 73 DELSENEEDLEEKSESEG 90
Score = 37 (18.1 bits), Expect = 2.1e-138, Sum P(5) = 2.1e-138
Identities = 7/28 (25%), Positives = 13/28 (46%)
Query: 723 DASEDELPRGKGDCQQSEIVALTEQPEE 750
D ++ P GK C E + +P++
Sbjct: 371 DPELEKAPEGKWSCPHCEKEGIQWEPKD 398
Score = 37 (18.1 bits), Expect = 2.1e-138, Sum P(5) = 2.1e-138
Identities = 9/42 (21%), Positives = 20/42 (47%)
Query: 699 EPALEKYSHLTDLFVQFERQTLKKDASEDELPRGKGDCQQSE 740
+P LEK E++ ++ + +D+ +G C++ E
Sbjct: 371 DPELEKAPEGKWSCPHCEKEGIQWEPKDDDDEEEEGGCEEEE 412
>UNIPROTKB|F1LPP7 [details] [associations]
symbol:Chd3 "Protein Chd3" species:10116 "Rattus
norvegicus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR009071 InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR002464 InterPro:IPR012957 InterPro:IPR012958
InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271 Pfam:PF00628
Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 RGD:1311923 GO:GO:0005524
GO:GO:0005634 GO:GO:0006355 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 Gene3D:1.10.30.10 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR023780 InterPro:IPR009462
InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465 IPI:IPI00369880
Ensembl:ENSRNOT00000057060 Uniprot:F1LPP7
Length = 2020
Score = 1201 (427.8 bits), Expect = 5.2e-155, Sum P(6) = 5.2e-155
Identities = 265/541 (48%), Positives = 356/541 (65%)
Query: 753 GGALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLV 812
GG L +QLE LNWLR W + + ILADEMGLGKT+ F+ SLY E K P LV
Sbjct: 784 GGTLHMYQLEGLNWLRFSWAQGTDTILADEMGLGKTIQTIVFLYSLYKEGHTKGPFLVSA 843
Query: 813 PLSTMPNWLAEFALWAPNLNVVEYHGCAKARAIIRQYEWHASDPDNLN-------KKTSS 865
PLST+ NW EF +WAP VV Y G +RAIIR+ E+ D K+ +
Sbjct: 844 PLSTIINWEREFQMWAPKFYVVTYTGDKDSRAIIRENEFSFEDNAIKGGKKAFKMKREAQ 903
Query: 866 YKFNVLLTTYEMILADSSHLRGVPWEVLVVDEGHRXXXXXXXXXXXXXXXXXQHRVLLTG 925
KF+VLLT+YE+I D + L + W LVVDE HR H++LLTG
Sbjct: 904 VKFHVLLTSYELITIDQAALGSIRWACLVVDEAHRLKNNQSKFFRVLNGYKIDHKLLLTG 963
Query: 926 TPLQNNIGEMYNLLNFLQPASFPSLSSFEEKFNDLTTTQKVEELKKLVAPHMLRRLKKDA 985
TPLQNN+ E+++LLNFL P F +L F E+F D++ ++++L L+ PHMLRRLK D
Sbjct: 964 TPLQNNLEELFHLLNFLTPERFNNLEGFLEEFADISKEDQIKKLHDLLGPHMLRRLKADV 1023
Query: 986 MQNIPPKTERMVPVELSSIQAEYYRAMLTKNYQILRNIGKGVAQQSMLNIVMQLRKVCNH 1045
+N+P KTE +V VELS +Q +YY+ +LT+N++ L + G G Q S+LNI+M L+K CNH
Sbjct: 1024 FKNMPAKTELIVRVELSPMQKKYYKYILTRNFEALNSRGGG-NQVSLLNIMMDLKKCCNH 1082
Query: 1046 PYLIPGTEPDSGSVEF-LHE--MRIKASAKLTLLHSMLKVLYKEGHRVLIFSQMTKLLDI 1102
PYL P +S + +E IK+S KL LL ML+ L ++GHRVLIFSQMTK+LD+
Sbjct: 1083 PYLFPVAAMESPKLPSGAYEGGALIKSSGKLLLLQKMLRKLKEQGHRVLIFSQMTKMLDL 1142
Query: 1103 LEDYLNIEFGPKTYERVDGSVSVGDRQAAITRFNQDKSR-FVFLLSTRSCGLGINLATAD 1161
LED+L+ E G K YER+DG ++ RQ AI RFN ++ F FLLSTR+ GLGINLATAD
Sbjct: 1143 LEDFLDYE-GYK-YERIDGGITGALRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATAD 1200
Query: 1162 TVIIYDSDFNPHADIQAMNRAHRIGQSKRLLVYRLVVRASVEERILQLAKKKLMLDQLFV 1221
TVII+DSD+NPH DIQA +RAHRIGQ+ ++++YR V RASVEERI Q+AK+K+ML L V
Sbjct: 1201 TVIIFDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTRASVEERITQVAKRKMMLTHLVV 1260
Query: 1222 -----NKSGS--QKEVEDILRWGTEELFNDSPGINGKDMGENNTSIE---EAVRDLEQKH 1271
+K+GS ++E++DIL++GTEELF D G++ E+++ I EA+ L ++
Sbjct: 1261 RPGLGSKAGSMSKQELDDILKFGTEELFKDEN--EGENKEEDSSVIHYDNEAIARLLDRN 1318
Query: 1272 R 1272
+
Sbjct: 1319 Q 1319
Score = 326 (119.8 bits), Expect = 1.2e-42, Sum P(6) = 1.2e-42
Identities = 80/207 (38%), Positives = 104/207 (50%)
Query: 661 WKQPQRVISLRSSKDGTREAFVKWTGLPYDECTWEKLDEPALEKYSHLTDLFVQFERQTL 720
W R+I+ K G VKW LPYD+ TWE+ DE + +Y + + +
Sbjct: 681 WMTVHRIINHSMDKKGNYHYLVKWKDLPYDQSTWEE-DEMNIPEYDDHKQSYWRHRELIM 739
Query: 721 KKDASEDELPRGK-----GDCQQSE-----IVALTEQPEELK--GGALFPHQLEALNWLR 768
+D ++ + K GD S V QP + GG L +QLE LNWLR
Sbjct: 740 GEDPAQPRKYKKKKKEIQGDGPPSSPTNDPTVKYETQPRFITATGGTLHMYQLEGLNWLR 799
Query: 769 KCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLSTMPNWLAEFALWA 828
W + + ILADEMGLGKT+ F+ SLY E K P LV PLST+ NW EF +WA
Sbjct: 800 FSWAQGTDTILADEMGLGKTIQTIVFLYSLYKEGHTKGPFLVSAPLSTIINWEREFQMWA 859
Query: 829 PNLNVVEYHGCAKARAIIRQYEWHASD 855
P VV Y G +RAIIR+ E+ D
Sbjct: 860 PKFYVVTYTGDKDSRAIIRENEFSFED 886
Score = 182 (69.1 bits), Expect = 5.2e-155, Sum P(6) = 5.2e-155
Identities = 28/54 (51%), Positives = 38/54 (70%)
Query: 67 KKKGNDGYYYECVICDLGGNLLCCDSCPRTYHLQCLDPPLKRIPNGKWQCPKCT 120
+K+ D + C +C GG LLCCD+C +YH+ CL+PPL IPNG+W CP+CT
Sbjct: 499 EKEEEDDHMEYCRVCKDGGELLCCDACISSYHIHCLNPPLPDIPNGEWLCPRCT 552
Score = 181 (68.8 bits), Expect = 6.0e-151, Sum P(5) = 6.0e-151
Identities = 36/99 (36%), Positives = 54/99 (54%)
Query: 32 SNGKEENLVTSES-PRNTPSAKRRLKNEINADRSSTKKKGNDGYYYE----CVICDLGGN 86
++G+ + V ++ R P K K ++ + T ++ DGY + C +C GG
Sbjct: 386 ASGRPDGPVRAKKLKRGRPGRK---KKKVLGCPTVTGEEEVDGYETDHQDYCEVCQQGGE 442
Query: 87 LLCCDSCPRTYHLQCLDPPLKRIPNGKWQCPKCTQKNDQ 125
++ CD+CPR YHL CLDP L R P GKW CP C ++ Q
Sbjct: 443 IILCDTCPRAYHLVCLDPELDRAPEGKWSCPHCEKEGVQ 481
Score = 89 (36.4 bits), Expect = 5.2e-155, Sum P(6) = 5.2e-155
Identities = 29/73 (39%), Positives = 37/73 (50%)
Query: 664 PQRVISLRSSKDGTREAFVKWTGLPYDECTWEKLDEPALEKYSHLTDLFVQFERQTLKKD 723
P RV+ RS RE FVKW GL Y C+W K E LE + HL ++ ++R K D
Sbjct: 589 PPRVLQGRSE----REFFVKWVGLSYWHCSWAK--ELQLEIF-HLV-MYRNYQR---KND 637
Query: 724 ASEDE-LPRGKGD 735
E L G G+
Sbjct: 638 MDEPPPLDYGSGE 650
Score = 82 (33.9 bits), Expect = 2.8e-154, Sum P(6) = 2.8e-154
Identities = 19/53 (35%), Positives = 27/53 (50%)
Query: 596 EPAVTESAQVKGKAVSYEFLVKWVGKSNIHNSWIPESQLKVLAKRKLENYKAK 648
+P ++G++ EF VKWVG S H SW E QL++ NY+ K
Sbjct: 584 DPDAPPPRVLQGRS-EREFFVKWVGLSYWHCSWAKELQLEIFHLVMYRNYQRK 635
Score = 70 (29.7 bits), Expect = 5.2e-155, Sum P(6) = 5.2e-155
Identities = 21/62 (33%), Positives = 32/62 (51%)
Query: 1288 EGSTKIVWDENAIARLLDRSNLQSGSTDLAEGDLENDMLGSVKATEW--NEETTEDQAES 1345
E S+ I +D AIARLLDR+ + TD+ N+ L S K ++ EE ++ E
Sbjct: 1299 EDSSVIHYDNEAIARLLDRNQDATDDTDVQN---MNEYLSSFKVAQYVVREEDKIEEIER 1355
Query: 1346 PV 1347
+
Sbjct: 1356 EI 1357
Score = 59 (25.8 bits), Expect = 8.9e-09, Sum P(4) = 8.9e-09
Identities = 36/126 (28%), Positives = 54/126 (42%)
Query: 156 GADKVSQIFGNSILARKRSNKGKSVLALGVKSLEKSLDSSQVDVSCS-TKPE---NTSAG 211
GAD S+ F + + R+ ++ + + +GV SL K ++ + PE + SA
Sbjct: 1518 GADG-SETFADGV-PREGLSRQQVLTRIGVMSLVKKKVQEFEHINGRWSMPELMPDPSAD 1575
Query: 212 VPVEGSSSCPNDDDEKQLNASPTDSLADTK-FHPAEEVLPHSQVTKSEQND-EVPVEKHE 269
+S P AS T+S +K PA T E++D E P EK E
Sbjct: 1576 SKRSSRASSPTKTSPTTPEASTTNSPCTSKPATPAPSEKGDGVRTLLEKDDTENPEEKPE 1635
Query: 270 KSSTNG 275
KSS G
Sbjct: 1636 KSSKVG 1641
Score = 56 (24.8 bits), Expect = 3.2e-41, Sum P(6) = 3.2e-41
Identities = 21/83 (25%), Positives = 42/83 (50%)
Query: 959 DLTTTQKVEE-LKKL-VAPHMLRRLKKDAMQNIPPKTERMVPVELSSIQAEYYRAMLTKN 1016
D T Q + E L VA +++R ++D ++ I ER + + ++ +Y+ +L +
Sbjct: 1323 DDTDVQNMNEYLSSFKVAQYVVR--EEDKIEEI----EREIIKQEENVDPDYWEKLLRHH 1376
Query: 1017 YQ-----ILRNIGKGVAQQSMLN 1034
Y+ + RN+GKG + +N
Sbjct: 1377 YEQQQEDLARNLGKGKRVRKQVN 1399
Score = 54 (24.1 bits), Expect = 5.2e-155, Sum P(6) = 5.2e-155
Identities = 16/58 (27%), Positives = 28/58 (48%)
Query: 20 RKRRKLPCGPGLSNGKEENLVTSESPRNT----PSAKRRLKNEINADRSSTKKKGNDG 73
RKR+KL + ++E SES + P KRR K+ ++ + ++K +G
Sbjct: 117 RKRKKLDSEEEFGSERDEYREKSESGGSEYGTGPGRKRRRKHREKREKKTKRRKRGEG 174
Score = 43 (20.2 bits), Expect = 3.3e-150, Sum P(6) = 3.3e-150
Identities = 16/68 (23%), Positives = 30/68 (44%)
Query: 599 VTESAQVKGKAVSYEFLVKWVGKSNIHNSWIPESQLKVLAKRKLENYKAKYGTTVINICD 658
+ S KG +Y +LVKW ++W E ++ + + +++K Y I
Sbjct: 688 INHSMDKKG---NYHYLVKWKDLPYDQSTW-EEDEMNI---PEYDDHKQSYWRHRELIMG 740
Query: 659 ERWKQPQR 666
E QP++
Sbjct: 741 EDPAQPRK 748
Score = 43 (20.2 bits), Expect = 1.7e-136, Sum P(5) = 1.7e-136
Identities = 10/49 (20%), Positives = 26/49 (53%)
Query: 516 REDDKDSDPVAVNGKVQDESAVSTEDLGERNDKMVVEDADVSLRDNEGL 564
R+++++ + + V+ + ++E E+ E +++ D D D EG+
Sbjct: 2 RDEEEEEEEMVVSEEEEEEE----EEGDEEEEEVEAADEDDEEEDEEGV 46
Score = 42 (19.8 bits), Expect = 5.9e-129, Sum P(4) = 5.9e-129
Identities = 9/27 (33%), Positives = 15/27 (55%)
Query: 724 ASEDELPRGKGDCQQSEIVALTEQPEE 750
+ E+E +GD ++ E+ A E EE
Sbjct: 14 SEEEEEEEEEGDEEEEEVEAADEDDEE 40
Score = 39 (18.8 bits), Expect = 5.2e-155, Sum P(6) = 5.2e-155
Identities = 8/23 (34%), Positives = 15/23 (65%)
Query: 1351 DDASAENSERKEENAVTGIEENE 1373
+DA+ E+ + + E +V EE+E
Sbjct: 1401 NDAAQEDQDNQSEYSVGSEEEDE 1423
Score = 37 (18.1 bits), Expect = 7.3e-136, Sum P(5) = 7.3e-136
Identities = 7/22 (31%), Positives = 12/22 (54%)
Query: 509 ENAIDLLREDDKDSDPVAVNGK 530
E ++ EDD++ D V G+
Sbjct: 28 EEEVEAADEDDEEEDEEGVLGR 49
Score = 37 (18.1 bits), Expect = 8.9e-09, Sum P(4) = 8.9e-09
Identities = 11/43 (25%), Positives = 24/43 (55%)
Query: 425 ATATDDRHSDDFLVSENHNKILEENLACDTDLDAEVTENLAEL 467
A A R ++ ++E+H + +E+LA + +A + + L +L
Sbjct: 1844 AMALHARFAEAECLAESHQHLSKESLAGNKPANAVLHKVLNQL 1886
Score = 37 (18.1 bits), Expect = 1.2e-06, Sum P(4) = 1.2e-06
Identities = 8/17 (47%), Positives = 9/17 (52%)
Query: 289 ERDRKRKPEVKDEDSQK 305
E+D PE K E S K
Sbjct: 1623 EKDDTENPEEKPEKSSK 1639
>UNIPROTKB|F1M7Q0 [details] [associations]
symbol:Chd3 "Protein Chd3" species:10116 "Rattus
norvegicus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR009071 InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR002464 InterPro:IPR012957 InterPro:IPR012958
InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271 Pfam:PF00628
Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 RGD:1311923 GO:GO:0005524
GO:GO:0005634 GO:GO:0006355 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 Gene3D:1.10.30.10 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR023780 InterPro:IPR009462
InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465 OMA:EPEPGYR
IPI:IPI00959834 Ensembl:ENSRNOT00000012983 Uniprot:F1M7Q0
Length = 2054
Score = 1201 (427.8 bits), Expect = 8.5e-155, Sum P(6) = 8.5e-155
Identities = 265/541 (48%), Positives = 356/541 (65%)
Query: 753 GGALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLV 812
GG L +QLE LNWLR W + + ILADEMGLGKT+ F+ SLY E K P LV
Sbjct: 784 GGTLHMYQLEGLNWLRFSWAQGTDTILADEMGLGKTIQTIVFLYSLYKEGHTKGPFLVSA 843
Query: 813 PLSTMPNWLAEFALWAPNLNVVEYHGCAKARAIIRQYEWHASDPDNLN-------KKTSS 865
PLST+ NW EF +WAP VV Y G +RAIIR+ E+ D K+ +
Sbjct: 844 PLSTIINWEREFQMWAPKFYVVTYTGDKDSRAIIRENEFSFEDNAIKGGKKAFKMKREAQ 903
Query: 866 YKFNVLLTTYEMILADSSHLRGVPWEVLVVDEGHRXXXXXXXXXXXXXXXXXQHRVLLTG 925
KF+VLLT+YE+I D + L + W LVVDE HR H++LLTG
Sbjct: 904 VKFHVLLTSYELITIDQAALGSIRWACLVVDEAHRLKNNQSKFFRVLNGYKIDHKLLLTG 963
Query: 926 TPLQNNIGEMYNLLNFLQPASFPSLSSFEEKFNDLTTTQKVEELKKLVAPHMLRRLKKDA 985
TPLQNN+ E+++LLNFL P F +L F E+F D++ ++++L L+ PHMLRRLK D
Sbjct: 964 TPLQNNLEELFHLLNFLTPERFNNLEGFLEEFADISKEDQIKKLHDLLGPHMLRRLKADV 1023
Query: 986 MQNIPPKTERMVPVELSSIQAEYYRAMLTKNYQILRNIGKGVAQQSMLNIVMQLRKVCNH 1045
+N+P KTE +V VELS +Q +YY+ +LT+N++ L + G G Q S+LNI+M L+K CNH
Sbjct: 1024 FKNMPAKTELIVRVELSPMQKKYYKYILTRNFEALNSRGGG-NQVSLLNIMMDLKKCCNH 1082
Query: 1046 PYLIPGTEPDSGSVEF-LHE--MRIKASAKLTLLHSMLKVLYKEGHRVLIFSQMTKLLDI 1102
PYL P +S + +E IK+S KL LL ML+ L ++GHRVLIFSQMTK+LD+
Sbjct: 1083 PYLFPVAAMESPKLPSGAYEGGALIKSSGKLLLLQKMLRKLKEQGHRVLIFSQMTKMLDL 1142
Query: 1103 LEDYLNIEFGPKTYERVDGSVSVGDRQAAITRFNQDKSR-FVFLLSTRSCGLGINLATAD 1161
LED+L+ E G K YER+DG ++ RQ AI RFN ++ F FLLSTR+ GLGINLATAD
Sbjct: 1143 LEDFLDYE-GYK-YERIDGGITGALRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATAD 1200
Query: 1162 TVIIYDSDFNPHADIQAMNRAHRIGQSKRLLVYRLVVRASVEERILQLAKKKLMLDQLFV 1221
TVII+DSD+NPH DIQA +RAHRIGQ+ ++++YR V RASVEERI Q+AK+K+ML L V
Sbjct: 1201 TVIIFDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTRASVEERITQVAKRKMMLTHLVV 1260
Query: 1222 -----NKSGS--QKEVEDILRWGTEELFNDSPGINGKDMGENNTSIE---EAVRDLEQKH 1271
+K+GS ++E++DIL++GTEELF D G++ E+++ I EA+ L ++
Sbjct: 1261 RPGLGSKAGSMSKQELDDILKFGTEELFKDEN--EGENKEEDSSVIHYDNEAIARLLDRN 1318
Query: 1272 R 1272
+
Sbjct: 1319 Q 1319
Score = 326 (119.8 bits), Expect = 1.4e-42, Sum P(6) = 1.4e-42
Identities = 80/207 (38%), Positives = 104/207 (50%)
Query: 661 WKQPQRVISLRSSKDGTREAFVKWTGLPYDECTWEKLDEPALEKYSHLTDLFVQFERQTL 720
W R+I+ K G VKW LPYD+ TWE+ DE + +Y + + +
Sbjct: 681 WMTVHRIINHSMDKKGNYHYLVKWKDLPYDQSTWEE-DEMNIPEYDDHKQSYWRHRELIM 739
Query: 721 KKDASEDELPRGK-----GDCQQSE-----IVALTEQPEELK--GGALFPHQLEALNWLR 768
+D ++ + K GD S V QP + GG L +QLE LNWLR
Sbjct: 740 GEDPAQPRKYKKKKKEIQGDGPPSSPTNDPTVKYETQPRFITATGGTLHMYQLEGLNWLR 799
Query: 769 KCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLSTMPNWLAEFALWA 828
W + + ILADEMGLGKT+ F+ SLY E K P LV PLST+ NW EF +WA
Sbjct: 800 FSWAQGTDTILADEMGLGKTIQTIVFLYSLYKEGHTKGPFLVSAPLSTIINWEREFQMWA 859
Query: 829 PNLNVVEYHGCAKARAIIRQYEWHASD 855
P VV Y G +RAIIR+ E+ D
Sbjct: 860 PKFYVVTYTGDKDSRAIIRENEFSFED 886
Score = 182 (69.1 bits), Expect = 8.5e-155, Sum P(6) = 8.5e-155
Identities = 28/54 (51%), Positives = 38/54 (70%)
Query: 67 KKKGNDGYYYECVICDLGGNLLCCDSCPRTYHLQCLDPPLKRIPNGKWQCPKCT 120
+K+ D + C +C GG LLCCD+C +YH+ CL+PPL IPNG+W CP+CT
Sbjct: 499 EKEEEDDHMEYCRVCKDGGELLCCDACISSYHIHCLNPPLPDIPNGEWLCPRCT 552
Score = 181 (68.8 bits), Expect = 9.1e-151, Sum P(5) = 9.1e-151
Identities = 36/99 (36%), Positives = 54/99 (54%)
Query: 32 SNGKEENLVTSES-PRNTPSAKRRLKNEINADRSSTKKKGNDGYYYE----CVICDLGGN 86
++G+ + V ++ R P K K ++ + T ++ DGY + C +C GG
Sbjct: 386 ASGRPDGPVRAKKLKRGRPGRK---KKKVLGCPTVTGEEEVDGYETDHQDYCEVCQQGGE 442
Query: 87 LLCCDSCPRTYHLQCLDPPLKRIPNGKWQCPKCTQKNDQ 125
++ CD+CPR YHL CLDP L R P GKW CP C ++ Q
Sbjct: 443 IILCDTCPRAYHLVCLDPELDRAPEGKWSCPHCEKEGVQ 481
Score = 89 (36.4 bits), Expect = 8.5e-155, Sum P(6) = 8.5e-155
Identities = 29/73 (39%), Positives = 37/73 (50%)
Query: 664 PQRVISLRSSKDGTREAFVKWTGLPYDECTWEKLDEPALEKYSHLTDLFVQFERQTLKKD 723
P RV+ RS RE FVKW GL Y C+W K E LE + HL ++ ++R K D
Sbjct: 589 PPRVLQGRSE----REFFVKWVGLSYWHCSWAK--ELQLEIF-HLV-MYRNYQR---KND 637
Query: 724 ASEDE-LPRGKGD 735
E L G G+
Sbjct: 638 MDEPPPLDYGSGE 650
Score = 82 (33.9 bits), Expect = 4.6e-154, Sum P(6) = 4.6e-154
Identities = 19/53 (35%), Positives = 27/53 (50%)
Query: 596 EPAVTESAQVKGKAVSYEFLVKWVGKSNIHNSWIPESQLKVLAKRKLENYKAK 648
+P ++G++ EF VKWVG S H SW E QL++ NY+ K
Sbjct: 584 DPDAPPPRVLQGRS-EREFFVKWVGLSYWHCSWAKELQLEIFHLVMYRNYQRK 635
Score = 70 (29.7 bits), Expect = 8.5e-155, Sum P(6) = 8.5e-155
Identities = 21/62 (33%), Positives = 32/62 (51%)
Query: 1288 EGSTKIVWDENAIARLLDRSNLQSGSTDLAEGDLENDMLGSVKATEW--NEETTEDQAES 1345
E S+ I +D AIARLLDR+ + TD+ N+ L S K ++ EE ++ E
Sbjct: 1299 EDSSVIHYDNEAIARLLDRNQDATDDTDVQN---MNEYLSSFKVAQYVVREEDKIEEIER 1355
Query: 1346 PV 1347
+
Sbjct: 1356 EI 1357
Score = 59 (25.8 bits), Expect = 9.6e-09, Sum P(4) = 9.6e-09
Identities = 36/126 (28%), Positives = 54/126 (42%)
Query: 156 GADKVSQIFGNSILARKRSNKGKSVLALGVKSLEKSLDSSQVDVSCS-TKPE---NTSAG 211
GAD S+ F + + R+ ++ + + +GV SL K ++ + PE + SA
Sbjct: 1518 GADG-SETFADGV-PREGLSRQQVLTRIGVMSLVKKKVQEFEHINGRWSMPELMPDPSAD 1575
Query: 212 VPVEGSSSCPNDDDEKQLNASPTDSLADTK-FHPAEEVLPHSQVTKSEQND-EVPVEKHE 269
+S P AS T+S +K PA T E++D E P EK E
Sbjct: 1576 SKRSSRASSPTKTSPTTPEASTTNSPCTSKPATPAPSEKGDGVRTLLEKDDTENPEEKPE 1635
Query: 270 KSSTNG 275
KSS G
Sbjct: 1636 KSSKVG 1641
Score = 56 (24.8 bits), Expect = 3.6e-41, Sum P(6) = 3.6e-41
Identities = 21/83 (25%), Positives = 42/83 (50%)
Query: 959 DLTTTQKVEE-LKKL-VAPHMLRRLKKDAMQNIPPKTERMVPVELSSIQAEYYRAMLTKN 1016
D T Q + E L VA +++R ++D ++ I ER + + ++ +Y+ +L +
Sbjct: 1323 DDTDVQNMNEYLSSFKVAQYVVR--EEDKIEEI----EREIIKQEENVDPDYWEKLLRHH 1376
Query: 1017 YQ-----ILRNIGKGVAQQSMLN 1034
Y+ + RN+GKG + +N
Sbjct: 1377 YEQQQEDLARNLGKGKRVRKQVN 1399
Score = 54 (24.1 bits), Expect = 8.5e-155, Sum P(6) = 8.5e-155
Identities = 16/58 (27%), Positives = 28/58 (48%)
Query: 20 RKRRKLPCGPGLSNGKEENLVTSESPRNT----PSAKRRLKNEINADRSSTKKKGNDG 73
RKR+KL + ++E SES + P KRR K+ ++ + ++K +G
Sbjct: 117 RKRKKLDSEEEFGSERDEYREKSESGGSEYGTGPGRKRRRKHREKREKKTKRRKRGEG 174
Score = 43 (20.2 bits), Expect = 5.5e-150, Sum P(6) = 5.5e-150
Identities = 16/68 (23%), Positives = 30/68 (44%)
Query: 599 VTESAQVKGKAVSYEFLVKWVGKSNIHNSWIPESQLKVLAKRKLENYKAKYGTTVINICD 658
+ S KG +Y +LVKW ++W E ++ + + +++K Y I
Sbjct: 688 INHSMDKKG---NYHYLVKWKDLPYDQSTW-EEDEMNI---PEYDDHKQSYWRHRELIMG 740
Query: 659 ERWKQPQR 666
E QP++
Sbjct: 741 EDPAQPRK 748
Score = 43 (20.2 bits), Expect = 2.6e-136, Sum P(5) = 2.6e-136
Identities = 10/49 (20%), Positives = 26/49 (53%)
Query: 516 REDDKDSDPVAVNGKVQDESAVSTEDLGERNDKMVVEDADVSLRDNEGL 564
R+++++ + + V+ + ++E E+ E +++ D D D EG+
Sbjct: 2 RDEEEEEEEMVVSEEEEEEE----EEGDEEEEEVEAADEDDEEEDEEGV 46
Score = 42 (19.8 bits), Expect = 8.2e-129, Sum P(4) = 8.2e-129
Identities = 9/27 (33%), Positives = 15/27 (55%)
Query: 724 ASEDELPRGKGDCQQSEIVALTEQPEE 750
+ E+E +GD ++ E+ A E EE
Sbjct: 14 SEEEEEEEEEGDEEEEEVEAADEDDEE 40
Score = 39 (18.8 bits), Expect = 8.5e-155, Sum P(6) = 8.5e-155
Identities = 8/23 (34%), Positives = 15/23 (65%)
Query: 1351 DDASAENSERKEENAVTGIEENE 1373
+DA+ E+ + + E +V EE+E
Sbjct: 1401 NDAAQEDQDNQSEYSVGSEEEDE 1423
Score = 37 (18.1 bits), Expect = 1.1e-135, Sum P(5) = 1.1e-135
Identities = 7/22 (31%), Positives = 12/22 (54%)
Query: 509 ENAIDLLREDDKDSDPVAVNGK 530
E ++ EDD++ D V G+
Sbjct: 28 EEEVEAADEDDEEEDEEGVLGR 49
Score = 37 (18.1 bits), Expect = 9.6e-09, Sum P(4) = 9.6e-09
Identities = 11/43 (25%), Positives = 24/43 (55%)
Query: 425 ATATDDRHSDDFLVSENHNKILEENLACDTDLDAEVTENLAEL 467
A A R ++ ++E+H + +E+LA + +A + + L +L
Sbjct: 1878 AMALHARFAEAECLAESHQHLSKESLAGNKPANAVLHKVLNQL 1920
Score = 37 (18.1 bits), Expect = 1.3e-06, Sum P(4) = 1.3e-06
Identities = 8/17 (47%), Positives = 9/17 (52%)
Query: 289 ERDRKRKPEVKDEDSQK 305
E+D PE K E S K
Sbjct: 1623 EKDDTENPEEKPEKSSK 1639
>FB|FBgn0262519 [details] [associations]
symbol:Mi-2 species:7227 "Drosophila melanogaster"
[GO:0016887 "ATPase activity" evidence=IDA;NAS] [GO:0005634
"nucleus" evidence=ISS;IDA;NAS] [GO:0004003 "ATP-dependent DNA
helicase activity" evidence=ISS] [GO:0004386 "helicase activity"
evidence=ISS] [GO:0016581 "NuRD complex" evidence=ISS;TAS]
[GO:0006333 "chromatin assembly or disassembly" evidence=ISS]
[GO:0003682 "chromatin binding" evidence=ISS;IDA] [GO:0003678 "DNA
helicase activity" evidence=ISS] [GO:0005700 "polytene chromosome"
evidence=IDA] [GO:0042766 "nucleosome mobilization" evidence=IDA]
[GO:0003677 "DNA binding" evidence=IDA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0007517 "muscle
organ development" evidence=IMP] [GO:0048813 "dendrite
morphogenesis" evidence=IMP] [GO:0031491 "nucleosome binding"
evidence=IDA] [GO:0000122 "negative regulation of transcription
from RNA polymerase II promoter" evidence=IDA] [GO:0070615
"nucleosome-dependent ATPase activity" evidence=IDA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012957 InterPro:IPR012958 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00628 Pfam:PF08073 Pfam:PF08074
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194
SMART:SM00184 SMART:SM00249 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 EMBL:AE014296 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 GO:GO:0006351 GO:GO:0000122
GO:GO:0048813 GO:GO:0007517 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 GO:GO:0004003 InterPro:IPR019786
PROSITE:PS01359 GO:GO:0005700 GO:GO:0042766 InterPro:IPR016197
SUPFAM:SSF54160 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0031491 GO:GO:0016581 InterPro:IPR023780
PROSITE:PS00598 GeneTree:ENSGT00560000076896 InterPro:IPR009462
InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465 KO:K11643
EMBL:AF119716 EMBL:AY113368 RefSeq:NP_001163476.1
RefSeq:NP_649154.2 UniGene:Dm.28317 ProteinModelPortal:O97159
SMR:O97159 DIP:DIP-22862N IntAct:O97159 MINT:MINT-864813
STRING:O97159 PaxDb:O97159 EnsemblMetazoa:FBtr0074919
EnsemblMetazoa:FBtr0302046 GeneID:40170 KEGG:dme:Dmel_CG8103
CTD:40170 FlyBase:FBgn0262519 InParanoid:O97159 OrthoDB:EOG4T76J4
ChiTaRS:Mi-2 GenomeRNAi:40170 NextBio:817384 Bgee:O97159
GermOnline:CG8103 Uniprot:O97159
Length = 1982
Score = 1178 (419.7 bits), Expect = 1.5e-154, Sum P(5) = 1.5e-154
Identities = 252/517 (48%), Positives = 346/517 (66%)
Query: 746 EQPEELKGGA--LFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFK 803
+QP L+G L P+Q+E +NWLR W + + ILADEMGLGKT+ F+ SLY E
Sbjct: 718 DQPAFLEGTGMQLHPYQIEGINWLRYSWGQGIDTILADEMGLGKTIQTVTFLYSLYKEGH 777
Query: 804 AKLPCLVLVPLSTMPNWLAEFALWAPNLNVVEYHGCAKARAIIRQ----YEWHASDPDNL 859
+ P LV VPLST+ NW EF LWAP+ + Y G +RA+IR+ +E A +
Sbjct: 778 CRGPFLVAVPLSTLVNWEREFELWAPDFYCITYIGDKDSRAVIRENELSFEEGAIRGSKV 837
Query: 860 NK-KTSSYKFNVLLTTYEMILADSSHLRGVPWEVLVVDEGHRXXXXXXXXXXXXXXXXXQ 918
++ +T+ YKFNVLLT+YE+I D++ L + W VLVVDE HR
Sbjct: 838 SRLRTTQYKFNVLLTSYELISMDAACLGSIDWAVLVVDEAHRLKSNQSKFFRILNSYTIA 897
Query: 919 HRVLLTGTPLQNNIGEMYNLLNFLQPASFPSLSSFEEKFNDLTTTQKVEELKKLVAPHML 978
+++LLTGTPLQNN+ E+++LLNFL F L +F+ +F D++ ++V+ L +++ PHML
Sbjct: 898 YKLLLTGTPLQNNLEELFHLLNFLSRDKFNDLQAFQGEFADVSKEEQVKRLHEMLGPHML 957
Query: 979 RRLKKDAMQNIPPKTERMVPVELSSIQAEYYRAMLTKNYQILRNIGKGVAQQSMLNIVMQ 1038
RRLK D ++N+P K+E +V VELS++Q ++Y+ +LTKNY+ L N G S++NI+M
Sbjct: 958 RRLKTDVLKNMPSKSEFIVRVELSAMQKKFYKFILTKNYEAL-NSKSGGGSCSLINIMMD 1016
Query: 1039 LRKVCNHPYLIPGT-EPDSGSVEFLHEMR--IKASAKLTLLHSMLKVLYKEGHRVLIFSQ 1095
L+K CNHPYL P E + + L+E+ KA+ KL LL MLK L + HRVLIFSQ
Sbjct: 1017 LKKCCNHPYLFPSAAEEATTAAGGLYEINSLTKAAGKLVLLSKMLKQLKAQNHRVLIFSQ 1076
Query: 1096 MTKLLDILEDYLNIEFGPKTYERVDGSVSVGDRQAAITRFNQDKSR-FVFLLSTRSCGLG 1154
MTK+LDILED+L E YER+DG ++ RQ AI RFN ++ FVFLLSTR+ GLG
Sbjct: 1077 MTKMLDILEDFLEGE--QYKYERIDGGITGTLRQEAIDRFNAPGAQQFVFLLSTRAGGLG 1134
Query: 1155 INLATADTVIIYDSDFNPHADIQAMNRAHRIGQSKRLLVYRLVVRASVEERILQLAKKKL 1214
INLATADTVIIYDSD+NPH DIQA +RAHRIGQ+ ++++YR V R SVEER+ Q+AK+K+
Sbjct: 1135 INLATADTVIIYDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTRNSVEERVTQVAKRKM 1194
Query: 1215 MLDQLFVNKS--G-----SQKEVEDILRWGTEELFND 1244
ML L V G +++E++DILR+GTE+LF +
Sbjct: 1195 MLTHLVVRPGMGGKGANFTKQELDDILRFGTEDLFKE 1231
Score = 187 (70.9 bits), Expect = 1.5e-154, Sum P(5) = 1.5e-154
Identities = 33/83 (39%), Positives = 48/83 (57%)
Query: 38 NLVTSESPRNTPSAKRRLKNEINADRSSTKKKGNDGYYYECVICDLGGNLLCCDSCPRTY 97
+LV E + P + AD + +++ +D + C +C GG LLCCDSCP Y
Sbjct: 400 HLVCLEPELDEPPEGKWSCPHCEADGGAAEEEDDDEHQEFCRVCKDGGELLCCDSCPSAY 459
Query: 98 HLQCLDPPLKRIPNGKWQCPKCT 120
H CL+PPL IP+G W+CP+C+
Sbjct: 460 HTFCLNPPLDTIPDGDWRCPRCS 482
Score = 171 (65.3 bits), Expect = 7.2e-153, Sum P(5) = 7.2e-153
Identities = 33/85 (38%), Positives = 43/85 (50%)
Query: 42 SESPRNTPSAKRRLKNEINADRSSTKKK----GNDGYYYE---CVICDLGGNLLCCDSCP 94
S +P AK ++ N+ K K G DG + C +C GG ++ CD+CP
Sbjct: 337 SGAPVVRKKAKTKIGNKFKKKNKLKKTKNFPEGEDGEHEHQDYCEVCQQGGEIILCDTCP 396
Query: 95 RTYHLQCLDPPLKRIPNGKWQCPKC 119
R YHL CL+P L P GKW CP C
Sbjct: 397 RAYHLVCLEPELDEPPEGKWSCPHC 421
Score = 100 (40.3 bits), Expect = 1.5e-154, Sum P(5) = 1.5e-154
Identities = 18/36 (50%), Positives = 25/36 (69%)
Query: 661 WKQPQRVISLRSSKDGTREAFVKWTGLPYDECTWEK 696
W QRVI+ R+++DG+ VKW LPYD+ TWE+
Sbjct: 611 WLIVQRVINHRTARDGSTMYLVKWRELPYDKSTWEE 646
Score = 75 (31.5 bits), Expect = 1.5e-154, Sum P(5) = 1.5e-154
Identities = 33/114 (28%), Positives = 56/114 (49%)
Query: 1246 PGINGKDMGENNTSIEEAVRDLEQKHRKRGGGLGDVYQDKCTEGSTKIVWDENAIARLLD 1305
PG+ GK G N T ++L+ R G D++++ E + I +D+ A+A LLD
Sbjct: 1203 PGMGGK--GANFTK-----QELDDILRF---GTEDLFKEDDKEEA--IHYDDKAVAELLD 1250
Query: 1306 RSNLQSGSTDLAEGDLENDMLGSVKATEWNEETTEDQAESPVAAVDDASAENSE 1359
R+N G + + N+ L S K + + E++ E+ + D AENS+
Sbjct: 1251 RTN--RGIEE--KESWANEYLSSFKVASYATKEEEEEEETEIIKQD---AENSD 1297
Score = 74 (31.1 bits), Expect = 1.5e-154, Sum P(5) = 1.5e-154
Identities = 15/53 (28%), Positives = 27/53 (50%)
Query: 597 PAVTESAQVKGKAVSYEFLVKWVGKSNIHNSWIPESQLKVLAKRKLENYKAKY 649
P+ ++ ++ V E+ +KW S H W+PE QL V + +++ KY
Sbjct: 507 PSTSKGSKNSNSRVR-EYFIKWHNMSYWHCEWVPEVQLDVHHPLMIRSFQRKY 558
Score = 70 (29.7 bits), Expect = 2.9e-11, Sum P(2) = 2.9e-11
Identities = 48/184 (26%), Positives = 73/184 (39%)
Query: 473 RSSDEECMKNDIGVDRIQVYRRSVTKECKVTKECKGENAIDLLREDDKDSDPVAVNGKVQ 532
+ D E K+ ++ +V + +E K + K EN ++ D K SD +V+
Sbjct: 1574 KDKDSEKEKDKTSAEKSEVKQEQEAEEDKKPGDVKQENPVEEAAGDTKPSD-----AEVK 1628
Query: 533 DESAVSTEDLGERNDKMVVEDADVSLRDNEGLTVSE-IHITCESTDKDVDV------GK- 584
E A TE E D V E+ ++ E + + I T D D DV G+
Sbjct: 1629 TEVA-KTEPKEETKDPEVKEEPKTEEKEKEKVDDKKPIPPTTVIDDDDDDVMIVKEDGEL 1687
Query: 585 -KTSGSVAKRVQEPAVTESAQV----KGKAVSYEFLV-KWV------GKSNIHNSWIPES 632
K S S K + A SA KG S E L K++ G + +H W+ E
Sbjct: 1688 EKPSASSPKDQKAVAAATSAATGATGKGAEDSLEVLKRKFMFNIADGGFTELHTLWLNEE 1747
Query: 633 QLKV 636
+ V
Sbjct: 1748 KAAV 1751
Score = 59 (25.8 bits), Expect = 2.0e-144, Sum P(4) = 2.0e-144
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 671 RSSKDGTREAFVKWTGLPYDECTW 694
++S RE F+KW + Y C W
Sbjct: 514 KNSNSRVREYFIKWHNMSYWHCEW 537
Score = 50 (22.7 bits), Expect = 4.5e-08, Sum P(3) = 4.5e-08
Identities = 18/80 (22%), Positives = 33/80 (41%)
Query: 187 SLEKSLDSSQVDVSCSTKPENTSAGVPVEGSSSCPNDDD-EKQLNASPTDSLADTKFHPA 245
S EKS + + KP + PVE ++ D E + + T+ +TK
Sbjct: 1586 SAEKSEVKQEQEAEEDKKPGDVKQENPVEEAAGDTKPSDAEVKTEVAKTEPKEETKDPEV 1645
Query: 246 EEVLPHSQVTKSEQNDEVPV 265
+E + K + +D+ P+
Sbjct: 1646 KEEPKTEEKEKEKVDDKKPI 1665
Score = 47 (21.6 bits), Expect = 9.1e-08, Sum P(3) = 9.1e-08
Identities = 29/113 (25%), Positives = 40/113 (35%)
Query: 269 EKSSTNGSSGIKFVLAIGASERDRKRKPEVKDEDSQKKLRVDXXXXXXXXXXXXXXXIGT 328
+KS+T +S + + S K E KD+DS+K+ D
Sbjct: 1545 DKSATTSNS-VTPATSAAPSPAPASEKGEDKDKDSEKEK--DKTSAEKSEVKQEQEAEED 1601
Query: 329 LSPGTSKLHEKQRTNNDEVSASLCEVDVGTKGLDAQRKDELAEETTDPLDKSD 381
PG K Q +E + D K A K E EET DP K +
Sbjct: 1602 KKPGDVK----QENPVEEAAGDTKPSDAEVKTEVA--KTEPKEETKDPEVKEE 1648
Score = 46 (21.3 bits), Expect = 4.5e-08, Sum P(3) = 4.5e-08
Identities = 8/22 (36%), Positives = 16/22 (72%)
Query: 503 TKECKGENAIDLLREDDKDSDP 524
TKE + E +++++D ++SDP
Sbjct: 1277 TKEEEEEEETEIIKQDAENSDP 1298
Score = 44 (20.5 bits), Expect = 4.5e-08, Sum P(3) = 4.5e-08
Identities = 22/83 (26%), Positives = 32/83 (38%)
Query: 520 KDSDPVAVNGKVQDESAVSTEDLGERNDKMVVEDADVSLRDNEGLTVSEIHITCESTDKD 579
K +PV K QD +A+ G DK V+ + + + E DKD
Sbjct: 1519 KPCEPVRSALK-QDVAALEAPPTGGNVDKSATTSNSVTPATSAAPSPAPASEKGEDKDKD 1577
Query: 580 VDVGK-KTSGSVAKRVQEPAVTE 601
+ K KTS ++ QE E
Sbjct: 1578 SEKEKDKTSAEKSEVKQEQEAEE 1600
Score = 42 (19.8 bits), Expect = 4.4e-151, Sum P(5) = 4.4e-151
Identities = 11/27 (40%), Positives = 14/27 (51%)
Query: 1337 ETTEDQAESPVAAVDDASAENSERKEE 1363
E ED+ + D SAE SE K+E
Sbjct: 1569 EKGEDKDKDSEKEKDKTSAEKSEVKQE 1595
Score = 41 (19.5 bits), Expect = 5.6e-151, Sum P(5) = 5.6e-151
Identities = 23/117 (19%), Positives = 49/117 (41%)
Query: 1261 EEAVRDLEQKHRKRGGGLGDVYQDKCTEGSTKI--VWDENAIARLLDRSNLQSGSTDLAE 1318
E+ +D E++ K +V Q++ E K V EN + +G T ++
Sbjct: 1572 EDKDKDSEKEKDKTSAEKSEVKQEQEAEEDKKPGDVKQENPVEEA-------AGDTKPSD 1624
Query: 1319 GDLENDMLGSVKATEWNEETTEDQAESPVAAVDDASAENSERKEENAVTGIEENEWD 1375
+++ + V TE EET + + + + + ++K T I++++ D
Sbjct: 1625 AEVKTE----VAKTEPKEETKDPEVKEEPKTEEKEKEKVDDKKPIPPTTVIDDDDDD 1677
Score = 41 (19.5 bits), Expect = 1.1e-141, Sum P(6) = 1.1e-141
Identities = 9/41 (21%), Positives = 19/41 (46%)
Query: 32 SNGKEENLVTSESPRNTPSAKRRLKNEINADRSSTKKKGND 72
+N ++++ +S R KR+ + R K+K N+
Sbjct: 38 NNDEDDDYDPEDSRRKKKGKKRKTRKGEEKGRKKKKRKKNE 78
Score = 41 (19.5 bits), Expect = 3.4e-127, Sum P(4) = 3.4e-127
Identities = 23/77 (29%), Positives = 34/77 (44%)
Query: 658 DERWKQPQRVISLRSSKDGTREAF------VKWTGLPYDECTWEKLDEPALEKYSHLTDL 711
+E K+P+R S R K G R + +K G + + E+ D + +DL
Sbjct: 245 EEEEKKPRRKRSGRGKK-GRRPSGKVPTLKIKLLGKRKRDSSDEEQDASGASERD--SDL 301
Query: 712 FVQFERQTLKKDASEDE 728
+FER K D S DE
Sbjct: 302 --EFERMLQKSDDSADE 316
Score = 40 (19.1 bits), Expect = 4.5e-08, Sum P(3) = 4.5e-08
Identities = 22/101 (21%), Positives = 44/101 (43%)
Query: 425 ATATDDRHSDDFLVSENHNKILEENLACDTDLDA---EVTENLAELSPNVIRSSDEECMK 481
A + + R ++ ++E+H + +E+LA + +A +V L EL ++ SD +
Sbjct: 1845 AMSLNARFAEVECLAESHQHLSKESLAGNKPANAVLHKVLNQLEELLSDM--KSDVSRLP 1902
Query: 482 NDIG-----VDRIQVYRRSVTKECKVTKECKGENAIDLLRE 517
+ R+Q+ RS+ T NA L+ +
Sbjct: 1903 ATLARIPPVAQRLQMSERSILSRLAATAG-NASNAAQLMAQ 1942
Score = 39 (18.8 bits), Expect = 9.0e-151, Sum P(5) = 9.0e-151
Identities = 12/44 (27%), Positives = 20/44 (45%)
Query: 1331 ATEWNEET-TEDQAESPVAAVDDASAENSERKEENAVTGIEENE 1373
AT N T A SP A + ++ + ++E T E++E
Sbjct: 1548 ATTSNSVTPATSAAPSPAPASEKGEDKDKDSEKEKDKTSAEKSE 1591
Score = 39 (18.8 bits), Expect = 1.1e-141, Sum P(6) = 1.1e-141
Identities = 16/80 (20%), Positives = 31/80 (38%)
Query: 147 KSQSGVKSSGADKVSQIFGNSILARKRSNKGKSVLALGVKSLEKSLDSSQVDVSCSTKPE 206
+ + G + SG KV + + RKR + + A G + L+ ++ +
Sbjct: 258 RGKKGRRPSG--KVPTLKIKLLGKRKRDSSDEEQDASGASERDSDLEFERMLQKSDDSAD 315
Query: 207 NTSAGVPVEGSSSCPNDDDE 226
A V + +S P D+
Sbjct: 316 EKEAPVSSKADNSAPAAQDD 335
Score = 38 (18.4 bits), Expect = 4.5e-07, Sum P(3) = 4.5e-07
Identities = 13/40 (32%), Positives = 24/40 (60%)
Query: 513 DLLREDDKDSDPVAVNGKVQDESAVSTEDLGERNDKMVVE 552
DL +EDDK+ A++ D+ AV+ +L +R ++ + E
Sbjct: 1227 DLFKEDDKEE---AIH---YDDKAVA--ELLDRTNRGIEE 1258
>UNIPROTKB|E9PU01 [details] [associations]
symbol:Chd4 "Protein Chd4" species:10116 "Rattus
norvegicus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012957 InterPro:IPR012958 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00628 Pfam:PF08073 Pfam:PF08074
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194
SMART:SM00184 SMART:SM00249 SMART:SM00298 SMART:SM00490
Pfam:PF00385 RGD:620064 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR023780 GeneTree:ENSGT00560000076896
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
IPI:IPI01016558 PRIDE:E9PU01 Ensembl:ENSRNOT00000055970
ArrayExpress:E9PU01 Uniprot:E9PU01
Length = 1915
Score = 1242 (442.3 bits), Expect = 2.8e-154, Sum P(5) = 2.8e-154
Identities = 274/538 (50%), Positives = 353/538 (65%)
Query: 742 VALTEQPEELK--GGALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLY 799
V QPE L GG L P+Q+E LNWLR W + + ILADEMGLGKTV F+ SLY
Sbjct: 703 VKYERQPEYLDATGGTLHPYQMEGLNWLRFSWAQGTDTILADEMGLGKTVQTAVFLYSLY 762
Query: 800 CEFKAKLPCLVLVPLSTMPNWLAEFALWAPNLNVVEYHGCAKARAIIRQYEWHASD---- 855
E +K P LV PLST+ NW EF +WAP++ VV Y G +RAIIR+ E+ D
Sbjct: 763 KEGHSKGPFLVSAPLSTIINWEREFEMWAPDMYVVTYVGDKDSRAIIRENEFSFEDNAIR 822
Query: 856 ---PDNLNKKTSSYKFNVLLTTYEMILADSSHLRGVPWEVLVVDEGHRXXXXXXXXXXXX 912
+ KK +S KF+VLLT+YE+I D + L + W L+VDE HR
Sbjct: 823 GGKKASRMKKEASVKFHVLLTSYELITIDMAILGSIDWACLIVDEAHRLKNNQSKFFRVL 882
Query: 913 XXXXXQHRVLLTGTPLQNNIGEMYNLLNFLQPASFPSLSSFEEKFNDLTTTQKVEELKKL 972
QH++LLTGTPLQNN+ E+++LLNFL P F +L F E+F D+ ++++L +
Sbjct: 883 NGYSLQHKLLLTGTPLQNNLEELFHLLNFLTPERFHNLEGFLEEFADIAKEDQIKKLHDM 942
Query: 973 VAPHMLRRLKKDAMQNIPPKTERMVPVELSSIQAEYYRAMLTKNYQILRNIGKGVAQQSM 1032
+ PHMLRRLK D +N+P KTE +V VELS +Q +YY+ +LT+N++ L G G Q S+
Sbjct: 943 LGPHMLRRLKADVFKNMPSKTELIVRVELSPMQKKYYKYILTRNFEALNARGGG-NQVSL 1001
Query: 1033 LNIVMQLRKVCNHPYLIP--GTE-PDSGSVEFLHEMRIKASAKLTLLHSMLKVLYKEGHR 1089
LN+VM L+K CNHPYL P E P + + I+AS KL LL MLK L + GHR
Sbjct: 1002 LNVVMDLKKCCNHPYLFPVAAMEAPKMPNGMYDGSALIRASGKLLLLQKMLKNLKEGGHR 1061
Query: 1090 VLIFSQMTKLLDILEDYLNIEFGPKTYERVDGSVSVGDRQAAITRFNQDKSR-FVFLLST 1148
VLIFSQMTK+LD+LED+L E G K YER+DG ++ RQ AI RFN ++ F FLLST
Sbjct: 1062 VLIFSQMTKMLDLLEDFLEHE-GYK-YERIDGGITGNMRQEAIDRFNAPGAQQFCFLLST 1119
Query: 1149 RSCGLGINLATADTVIIYDSDFNPHADIQAMNRAHRIGQSKRLLVYRLVVRASVEERILQ 1208
R+ GLGINLATADTVIIYDSD+NPH DIQA +RAHRIGQ+K++++YR V RASVEERI Q
Sbjct: 1120 RAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQNKKVMIYRFVTRASVEERITQ 1179
Query: 1209 LAKKKLMLDQLFV-----NKSGS--QKEVEDILRWGTEELFNDSPGINGKDMGENNTS 1259
+AKKK+ML L V +K+GS ++E++DIL++GTEELF D G D E S
Sbjct: 1180 VAKKKMMLTHLVVRPGLGSKTGSMSKQELDDILKFGTEELFKDEATDGGGDNKEGEDS 1237
Score = 369 (135.0 bits), Expect = 2.4e-48, Sum P(5) = 2.4e-48
Identities = 133/418 (31%), Positives = 186/418 (44%)
Query: 661 WKQPQRVISLRSSKDGTREAFVKWTGLPYDECTWEKLD----EPALEKYSHLT--DLFVQ 714
W R+++ K G +KW LPYD+ +WE D + L K S+ +L
Sbjct: 614 WMMIHRILNHSVDKKGHVHYLIKWRDLPYDQASWESEDVEIQDYDLFKQSYWNHRELMRG 673
Query: 715 FERQTLKK--DASEDELPRGKGDCQQSEIVALTEQPEELK--GGALFPHQLEALNWLRKC 770
E + KK +L R V QPE L GG L P+Q+E LNWLR
Sbjct: 674 EEGRPGKKLKKVKLRKLERPPETPTVDPTVKYERQPEYLDATGGTLHPYQMEGLNWLRFS 733
Query: 771 WHKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLSTMPNWLAEFALWAPN 830
W + + ILADEMGLGKTV F+ SLY E +K P LV PLST+ NW EF +WAP+
Sbjct: 734 WAQGTDTILADEMGLGKTVQTAVFLYSLYKEGHSKGPFLVSAPLSTIINWEREFEMWAPD 793
Query: 831 LNVVEYHGCAKARAIIRQYEWHASDPDNL---NKKTSSYKFNVLLTTYEMILADSSHLRG 887
+ VV Y G +RAIIR+ E+ S DN KK S K + + +L S L
Sbjct: 794 MYVVTYVGDKDSRAIIRENEF--SFEDNAIRGGKKASRMKKEASVKFH--VLLTSYEL-- 847
Query: 888 VPWEVLVVDEGHRXXXXXXXXXXXXXXXXXQHRVLLTGTPLQNNI---GE--MYNLLNFL 942
+ ++ ++ RVL G LQ+ + G NL
Sbjct: 848 ITIDMAILGSIDWACLIVDEAHRLKNNQSKFFRVL-NGYSLQHKLLLTGTPLQNNLEELF 906
Query: 943 QPASFPSLSSFE--EKF-NDLTTTQKVEELKKLVAPHMLRRLKKDAMQNIPPKTERMVPV 999
+F + F E F + K +++KKL H + L ++ + + +P
Sbjct: 907 HLLNFLTPERFHNLEGFLEEFADIAKEDQIKKL---HDM--LGPHMLRRLKADVFKNMPS 961
Query: 1000 ELSSIQAEYYRAMLTKNYQIL--RNI----GKGVAQQ-SMLNIVMQLRKVCNHPYLIP 1050
+ I M K Y+ + RN +G Q S+LN+VM L+K CNHPYL P
Sbjct: 962 KTELIVRVELSPMQKKYYKYILTRNFEALNARGGGNQVSLLNVVMDLKKCCNHPYLFP 1019
Score = 191 (72.3 bits), Expect = 2.8e-154, Sum P(5) = 2.8e-154
Identities = 29/50 (58%), Positives = 38/50 (76%)
Query: 72 DGYYYE-CVICDLGGNLLCCDSCPRTYHLQCLDPPLKRIPNGKWQCPKCT 120
D ++ E C +C GG LLCCD+CP +YH+ CL+PPL IPNG+W CP+CT
Sbjct: 438 DDHHMEFCRVCKDGGELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCT 487
Score = 179 (68.1 bits), Expect = 1.5e-150, Sum P(4) = 1.5e-150
Identities = 30/85 (35%), Positives = 47/85 (55%)
Query: 41 TSESPRNTPSAKRRLKNEINADRSSTKKKGNDGYYYECVICDLGGNLLCCDSCPRTYHLQ 100
+S S + +AK++ K E + + Y C +C GG ++ CD+CPR YH+
Sbjct: 332 SSRSRKKLRTAKKKKKGEEEVTAVDGYETDHQDY---CEVCQQGGEIILCDTCPRAYHMV 388
Query: 101 CLDPPLKRIPNGKWQCPKCTQKNDQ 125
CLDP +++ P GKW CP C ++ Q
Sbjct: 389 CLDPDMEKAPEGKWSCPHCEKEGIQ 413
Score = 81 (33.6 bits), Expect = 2.4e-48, Sum P(5) = 2.4e-48
Identities = 36/140 (25%), Positives = 70/140 (50%)
Query: 1212 KKLMLDQLFVNKSGSQKEVEDILRWGTEELFND---SPGINGKDMGENNTSIEEAVR-DL 1267
KK+M+ + FV ++ ++ + + + + + PG+ K + +++ ++
Sbjct: 1160 KKVMIYR-FVTRASVEERITQVAK--KKMMLTHLVVRPGLGSKTGSMSKQELDDILKFGT 1216
Query: 1268 EQ--KHRKRGGGLGDVYQDKCTEGSTKIVWDENAIARLLDRSNLQSGSTDLAEGDLENDM 1325
E+ K GG GD +K E S+ I +D+ AI RLLDR+ ++ T+L +G N+
Sbjct: 1217 EELFKDEATDGG-GD---NKEGEDSSVIHYDDKAIERLLDRNQDETEDTEL-QG--MNEY 1269
Query: 1326 LGSVKATEW---NEETTEDQ 1342
L S K ++ EE E++
Sbjct: 1270 LSSFKVAQYVVREEEMGEEE 1289
Score = 79 (32.9 bits), Expect = 2.8e-154, Sum P(5) = 2.8e-154
Identities = 17/53 (32%), Positives = 27/53 (50%)
Query: 596 EPAVTESAQVKGKAVSYEFLVKWVGKSNIHNSWIPESQLKVLAKRKLENYKAK 648
+P ++G+ +F VKW G S H SW+ E QL++ + NY+ K
Sbjct: 519 DPNTPSPKPLEGRP-ERQFFVKWQGMSYWHCSWVSELQLELHCQVMFRNYQRK 570
Score = 75 (31.5 bits), Expect = 7.3e-154, Sum P(5) = 7.3e-154
Identities = 24/64 (37%), Positives = 33/64 (51%)
Query: 678 REAFVKWTGLPYDECTWEKLDEPALEKYSHLTDLFVQFERQTLKKDASEDELPRGK--GD 735
R+ FVKW G+ Y C+W + E LE H +F ++R K D DE P G GD
Sbjct: 534 RQFFVKWQGMSYWHCSW--VSELQLEL--HCQVMFRNYQR---KNDM--DEPPSGDFGGD 584
Query: 736 CQQS 739
++S
Sbjct: 585 EEKS 588
Score = 67 (28.6 bits), Expect = 3.1e-10, Sum P(3) = 3.1e-10
Identities = 43/190 (22%), Positives = 77/190 (40%)
Query: 111 NGKWQCPKCTQKNDQLKPISNLDSISKRARSKIITIKSQSGVKSS--GADKVSQIFGNSI 168
NG+W P+ + + K +S S S + + +Q + A+ +I NS
Sbjct: 1506 NGRWSMPELAEVEEN-KKMSQPGSPSPKTPTPSTPGDTQPNTPAPVPPAEDGIKIEENS- 1563
Query: 169 LARKRSNKGKSVLALGVKSLEKSLDSSQVDVSCSTKPENTSAGVPVEGSSSCPNDDDEKQ 228
L + S +G+ K ++ + + +V V C+ P A P G + P DD +
Sbjct: 1564 LKEEESTEGE-------KEVKPT--APEVTVECAQPP--APAPAPAPGPAPAPEDD---K 1609
Query: 229 LNASPTDSLADTKFHPAEEVLPHSQVTKSEQNDEVPVEKHEKSSTNGSSGIKFVLAIGAS 288
A P + + K AE + ++E VEK E+ S + I V+
Sbjct: 1610 APAEPPEG--EEKVEKAEVKERAEEPMETESKGTTEVEKAEEKSAVDLTPI--VVEDKEE 1665
Query: 289 ERDRKRKPEV 298
+++ + K EV
Sbjct: 1666 KKEEEEKKEV 1675
Score = 55 (24.4 bits), Expect = 1.5e-12, Sum P(5) = 1.5e-12
Identities = 25/112 (22%), Positives = 52/112 (46%)
Query: 930 NNIGEMYNLLNFLQPASFPSLSSFEEKFNDLTTTQKVEE-LKKL-VAPHMLRRLKKDAMQ 987
N GE +++++ A L +++ D T Q + E L VA +++R + +
Sbjct: 1231 NKEGEDSSVIHYDDKAIERLLDRNQDETED-TELQGMNEYLSSFKVAQYVVREEEMGEEE 1289
Query: 988 NIPPKTERMVPVELSSIQAEYYRAMLTKNYQ-----ILRNIGKGVAQQSMLN 1034
+ ER + + S+ +Y+ +L +Y+ + RN+GKG + +N
Sbjct: 1290 EV----EREIIKQEESVDPDYWEKLLRHHYEQQQEDLARNLGKGKRIRKQVN 1337
Score = 51 (23.0 bits), Expect = 2.7e-139, Sum P(5) = 2.7e-139
Identities = 28/134 (20%), Positives = 50/134 (37%)
Query: 216 GSSS-CPNDDDEKQLNASPTDSLADTKFHPAEEVLPHSQVTKSEQNDEVPVEKHEKSSTN 274
GS S C +E+ ++A +SL HP E P ++++E ++ +K K +
Sbjct: 6 GSPSPCSAGSEEEDMDALLNNSLPPP--HPENEDDPEEDLSEAE-TPKLKKKKKPKKPRD 62
Query: 275 GS--SGIKFVLAIGASERDRKRKPEVKDEDSQKKLRVDXXXXXXXXXXXXXXXIGTLSPG 332
+ +G S + PE +ED + LR D +G
Sbjct: 63 PKIPKSKRQKKELGDSSGEG---PEFVEEDEEAALRSDSEGSDYTPGKKKKKKLGPKKEK 119
Query: 333 TSKLHEKQRTNNDE 346
SK K+ ++
Sbjct: 120 KSKSKRKEEEEEED 133
Score = 49 (22.3 bits), Expect = 2.8e-154, Sum P(5) = 2.8e-154
Identities = 11/40 (27%), Positives = 24/40 (60%)
Query: 1323 NDMLGSVKATEWNEETTEDQAESPVAAVDDASAENSERKE 1362
ND GS + +W ++ +++Q++ VA+ ++ + ER E
Sbjct: 1339 ND--GSQEDRDWQDDQSDNQSDYSVAS-EEGDEDFDERSE 1375
Score = 47 (21.6 bits), Expect = 3.2e-08, Sum P(3) = 3.2e-08
Identities = 30/156 (19%), Positives = 62/156 (39%)
Query: 517 EDDK-DSDPVAVNGKVQD-ESAVSTEDLGERNDKMVVEDADVSLRDNEGLTVSEIHITCE 574
EDDK ++P KV+ E E+ E K E + + ++ I + +
Sbjct: 1606 EDDKAPAEPPEGEEKVEKAEVKERAEEPMETESKGTTEVEKAE--EKSAVDLTPIVVEDK 1663
Query: 575 STDKDVDVGKKTSGSVAKRVQEPA-VTESAQVKGKAVSYEFLVKWVGKSNIHNSWIPESQ 633
K+ + K+ + + + P +++ Q K + F + G + +H+ W E +
Sbjct: 1664 EEKKEEEEKKEV---LLQNGETPKDLSDEKQKKNLKQRFMFNIADGGFTELHSLWQNEER 1720
Query: 634 LKVLAKRKLENYKAKYG----TTVINICDERWKQPQ 665
+ K+ E + ++ +IN RW+ Q
Sbjct: 1721 AATVTKKTYEIWHRRHDYWLLAGIINHGYARWQDIQ 1756
Score = 41 (19.5 bits), Expect = 1.3e-07, Sum P(3) = 1.3e-07
Identities = 16/79 (20%), Positives = 31/79 (39%)
Query: 507 KGENAIDLLREDDKDSDPVAVNGKVQDESAVSTEDLGERNDKMVVEDADVSLRDNEGLTV 566
+GE ++ ++ +P+ K E + E +VVED + + E
Sbjct: 1616 EGEEKVEKAEVKERAEEPMETESKGTTEVEKAEEKSAVDLTPIVVEDKEEKKEEEEK--- 1672
Query: 567 SEIHITCESTDKDVDVGKK 585
E+ + T KD+ K+
Sbjct: 1673 KEVLLQNGETPKDLSDEKQ 1691
Score = 40 (19.1 bits), Expect = 2.8e-154, Sum P(5) = 2.8e-154
Identities = 11/44 (25%), Positives = 20/44 (45%)
Query: 26 PCGPGLSNGKEENLVTSESPRNTPSAKRRLKNEINADRSSTKKK 69
P P + EE+L +E+P+ K + + +S +KK
Sbjct: 30 PPHPENEDDPEEDLSEAETPKLKKKKKPKKPRDPKIPKSKRQKK 73
Score = 39 (18.8 bits), Expect = 1.4e-10, Sum P(4) = 1.4e-10
Identities = 8/28 (28%), Positives = 15/28 (53%)
Query: 723 DASEDELPRGKGDCQQSEIVALTEQPEE 750
D + E P G+ +++E+ E+P E
Sbjct: 1608 DKAPAEPPEGEEKVEKAEVKERAEEPME 1635
Score = 37 (18.1 bits), Expect = 2.7e-139, Sum P(5) = 2.7e-139
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 363 AQRKDELAEETTDPLDKSDKAGVHVNE 389
++RK+E EE D K K+ + E
Sbjct: 123 SKRKEEEEEEDDDDDSKEPKSSAQLLE 149
>UNIPROTKB|F5GWX5 [details] [associations]
symbol:CHD4 "Chromodomain-helicase-DNA-binding protein 4"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012957 InterPro:IPR012958 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00628 Pfam:PF08073 Pfam:PF08074
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194
SMART:SM00184 SMART:SM00249 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR023780 InterPro:IPR009462
InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465 EMBL:AC006064
IPI:IPI00000846 HGNC:HGNC:1919 ChiTaRS:CHD4
ProteinModelPortal:F5GWX5 SMR:F5GWX5 PRIDE:F5GWX5
Ensembl:ENST00000544040 UCSC:uc001qpn.3 ArrayExpress:F5GWX5
Bgee:F5GWX5 Uniprot:F5GWX5
Length = 1905
Score = 1242 (442.3 bits), Expect = 2.9e-154, Sum P(5) = 2.9e-154
Identities = 274/538 (50%), Positives = 353/538 (65%)
Query: 742 VALTEQPEELK--GGALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLY 799
V QPE L GG L P+Q+E LNWLR W + + ILADEMGLGKTV F+ SLY
Sbjct: 703 VKYERQPEYLDATGGTLHPYQMEGLNWLRFSWAQGTDTILADEMGLGKTVQTAVFLYSLY 762
Query: 800 CEFKAKLPCLVLVPLSTMPNWLAEFALWAPNLNVVEYHGCAKARAIIRQYEWHASD---- 855
E +K P LV PLST+ NW EF +WAP++ VV Y G +RAIIR+ E+ D
Sbjct: 763 KEGHSKGPFLVSAPLSTIINWEREFEMWAPDMYVVTYVGDKDSRAIIRENEFSFEDNAIR 822
Query: 856 ---PDNLNKKTSSYKFNVLLTTYEMILADSSHLRGVPWEVLVVDEGHRXXXXXXXXXXXX 912
+ KK +S KF+VLLT+YE+I D + L + W L+VDE HR
Sbjct: 823 GGKKASRMKKEASVKFHVLLTSYELITIDMAILGSIDWACLIVDEAHRLKNNQSKFFRVL 882
Query: 913 XXXXXQHRVLLTGTPLQNNIGEMYNLLNFLQPASFPSLSSFEEKFNDLTTTQKVEELKKL 972
QH++LLTGTPLQNN+ E+++LLNFL P F +L F E+F D+ ++++L +
Sbjct: 883 NGYSLQHKLLLTGTPLQNNLEELFHLLNFLTPERFHNLEGFLEEFADIAKEDQIKKLHDM 942
Query: 973 VAPHMLRRLKKDAMQNIPPKTERMVPVELSSIQAEYYRAMLTKNYQILRNIGKGVAQQSM 1032
+ PHMLRRLK D +N+P KTE +V VELS +Q +YY+ +LT+N++ L G G Q S+
Sbjct: 943 LGPHMLRRLKADVFKNMPSKTELIVRVELSPMQKKYYKYILTRNFEALNARGGG-NQVSL 1001
Query: 1033 LNIVMQLRKVCNHPYLIP--GTE-PDSGSVEFLHEMRIKASAKLTLLHSMLKVLYKEGHR 1089
LN+VM L+K CNHPYL P E P + + I+AS KL LL MLK L + GHR
Sbjct: 1002 LNVVMDLKKCCNHPYLFPVAAMEAPKMPNGMYDGSALIRASGKLLLLQKMLKNLKEGGHR 1061
Query: 1090 VLIFSQMTKLLDILEDYLNIEFGPKTYERVDGSVSVGDRQAAITRFNQDKSR-FVFLLST 1148
VLIFSQMTK+LD+LED+L E G K YER+DG ++ RQ AI RFN ++ F FLLST
Sbjct: 1062 VLIFSQMTKMLDLLEDFLEHE-GYK-YERIDGGITGNMRQEAIDRFNAPGAQQFCFLLST 1119
Query: 1149 RSCGLGINLATADTVIIYDSDFNPHADIQAMNRAHRIGQSKRLLVYRLVVRASVEERILQ 1208
R+ GLGINLATADTVIIYDSD+NPH DIQA +RAHRIGQ+K++++YR V RASVEERI Q
Sbjct: 1120 RAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQNKKVMIYRFVTRASVEERITQ 1179
Query: 1209 LAKKKLMLDQLFV-----NKSGS--QKEVEDILRWGTEELFNDSPGINGKDMGENNTS 1259
+AKKK+ML L V +K+GS ++E++DIL++GTEELF D G D E S
Sbjct: 1180 VAKKKMMLTHLVVRPGLGSKTGSMSKQELDDILKFGTEELFKDEATDGGGDNKEGEDS 1237
Score = 369 (135.0 bits), Expect = 3.5e-48, Sum P(6) = 3.5e-48
Identities = 133/418 (31%), Positives = 186/418 (44%)
Query: 661 WKQPQRVISLRSSKDGTREAFVKWTGLPYDECTWEKLD----EPALEKYSHLT--DLFVQ 714
W R+++ K G +KW LPYD+ +WE D + L K S+ +L
Sbjct: 614 WMMIHRILNHSVDKKGHVHYLIKWRDLPYDQASWESEDVEIQDYDLFKQSYWNHRELMRG 673
Query: 715 FERQTLKK--DASEDELPRGKGDCQQSEIVALTEQPEELK--GGALFPHQLEALNWLRKC 770
E + KK +L R V QPE L GG L P+Q+E LNWLR
Sbjct: 674 EEGRPGKKLKKVKLRKLERPPETPTVDPTVKYERQPEYLDATGGTLHPYQMEGLNWLRFS 733
Query: 771 WHKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLSTMPNWLAEFALWAPN 830
W + + ILADEMGLGKTV F+ SLY E +K P LV PLST+ NW EF +WAP+
Sbjct: 734 WAQGTDTILADEMGLGKTVQTAVFLYSLYKEGHSKGPFLVSAPLSTIINWEREFEMWAPD 793
Query: 831 LNVVEYHGCAKARAIIRQYEWHASDPDNL---NKKTSSYKFNVLLTTYEMILADSSHLRG 887
+ VV Y G +RAIIR+ E+ S DN KK S K + + +L S L
Sbjct: 794 MYVVTYVGDKDSRAIIRENEF--SFEDNAIRGGKKASRMKKEASVKFH--VLLTSYEL-- 847
Query: 888 VPWEVLVVDEGHRXXXXXXXXXXXXXXXXXQHRVLLTGTPLQNNI---GE--MYNLLNFL 942
+ ++ ++ RVL G LQ+ + G NL
Sbjct: 848 ITIDMAILGSIDWACLIVDEAHRLKNNQSKFFRVL-NGYSLQHKLLLTGTPLQNNLEELF 906
Query: 943 QPASFPSLSSFE--EKF-NDLTTTQKVEELKKLVAPHMLRRLKKDAMQNIPPKTERMVPV 999
+F + F E F + K +++KKL H + L ++ + + +P
Sbjct: 907 HLLNFLTPERFHNLEGFLEEFADIAKEDQIKKL---HDM--LGPHMLRRLKADVFKNMPS 961
Query: 1000 ELSSIQAEYYRAMLTKNYQIL--RNI----GKGVAQQ-SMLNIVMQLRKVCNHPYLIP 1050
+ I M K Y+ + RN +G Q S+LN+VM L+K CNHPYL P
Sbjct: 962 KTELIVRVELSPMQKKYYKYILTRNFEALNARGGGNQVSLLNVVMDLKKCCNHPYLFP 1019
Score = 191 (72.3 bits), Expect = 2.9e-154, Sum P(5) = 2.9e-154
Identities = 29/50 (58%), Positives = 38/50 (76%)
Query: 72 DGYYYE-CVICDLGGNLLCCDSCPRTYHLQCLDPPLKRIPNGKWQCPKCT 120
D ++ E C +C GG LLCCD+CP +YH+ CL+PPL IPNG+W CP+CT
Sbjct: 438 DDHHMEFCRVCKDGGELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCT 487
Score = 178 (67.7 bits), Expect = 1.6e-150, Sum P(4) = 1.6e-150
Identities = 29/90 (32%), Positives = 49/90 (54%)
Query: 40 VTSESPRNTPSAKRRLKNEINADRSSTKKKGNDGYYYE----CVICDLGGNLLCCDSCPR 95
V+ S + ++++L+ + + DGY + C +C GG ++ CD+CPR
Sbjct: 324 VSDGSTSRSSRSRKKLRTTKKKKKGEEEVTAVDGYETDHQDYCEVCQQGGEIILCDTCPR 383
Query: 96 TYHLQCLDPPLKRIPNGKWQCPKCTQKNDQ 125
YH+ CLDP +++ P GKW CP C ++ Q
Sbjct: 384 AYHMVCLDPDMEKAPEGKWSCPHCEKEGIQ 413
Score = 81 (33.6 bits), Expect = 3.5e-48, Sum P(6) = 3.5e-48
Identities = 36/140 (25%), Positives = 70/140 (50%)
Query: 1212 KKLMLDQLFVNKSGSQKEVEDILRWGTEELFND---SPGINGKDMGENNTSIEEAVR-DL 1267
KK+M+ + FV ++ ++ + + + + + PG+ K + +++ ++
Sbjct: 1160 KKVMIYR-FVTRASVEERITQVAK--KKMMLTHLVVRPGLGSKTGSMSKQELDDILKFGT 1216
Query: 1268 EQ--KHRKRGGGLGDVYQDKCTEGSTKIVWDENAIARLLDRSNLQSGSTDLAEGDLENDM 1325
E+ K GG GD +K E S+ I +D+ AI RLLDR+ ++ T+L +G N+
Sbjct: 1217 EELFKDEATDGG-GD---NKEGEDSSVIHYDDKAIERLLDRNQDETEDTEL-QG--MNEY 1269
Query: 1326 LGSVKATEW---NEETTEDQ 1342
L S K ++ EE E++
Sbjct: 1270 LSSFKVAQYVVREEEMGEEE 1289
Score = 79 (32.9 bits), Expect = 2.9e-154, Sum P(5) = 2.9e-154
Identities = 17/53 (32%), Positives = 27/53 (50%)
Query: 596 EPAVTESAQVKGKAVSYEFLVKWVGKSNIHNSWIPESQLKVLAKRKLENYKAK 648
+P ++G+ +F VKW G S H SW+ E QL++ + NY+ K
Sbjct: 519 DPNTPSPKPLEGRP-ERQFFVKWQGMSYWHCSWVSELQLELHCQVMFRNYQRK 570
Score = 75 (31.5 bits), Expect = 7.5e-154, Sum P(5) = 7.5e-154
Identities = 24/64 (37%), Positives = 33/64 (51%)
Query: 678 REAFVKWTGLPYDECTWEKLDEPALEKYSHLTDLFVQFERQTLKKDASEDELPRGK--GD 735
R+ FVKW G+ Y C+W + E LE H +F ++R K D DE P G GD
Sbjct: 534 RQFFVKWQGMSYWHCSW--VSELQLEL--HCQVMFRNYQR---KNDM--DEPPSGDFGGD 584
Query: 736 CQQS 739
++S
Sbjct: 585 EEKS 588
Score = 57 (25.1 bits), Expect = 3.9e-09, Sum P(3) = 3.9e-09
Identities = 40/195 (20%), Positives = 80/195 (41%)
Query: 487 DRIQVYRRSVTKECKVT--KECKG---ENAIDLLREDDKDS-DPVAVNGKVQDESAVSTE 540
D I++ S+ +E + KE K E AI+ + S D V + E V
Sbjct: 1555 DGIKIEENSLKEEESIEGEKEVKSTAPETAIECTQAPAPASEDEKVVVEPPEGEEKVEKA 1614
Query: 541 DLGERNDK-MVVED---ADVS-LRDNEGLTVSEIHITCESTDKDVDVGKKTSGSVAKRVQ 595
++ ER ++ M E ADV + + + ++ I + + K+ + K+ + + +
Sbjct: 1615 EVKERTEEPMETEPKGAADVEKVEEKSAIDLTPIVVEDKEEKKEEEEKKEV---MLQNGE 1671
Query: 596 EPA-VTESAQVKGKAVSYEFLVKWVGKSNIHNSWIPESQLKVLAKRKLENYKAKYG---- 650
P + + Q K + F + G + +H+ W E + + K+ E + ++
Sbjct: 1672 TPKDLNDEKQKKNIKQRFMFNIADGGFTELHSLWQNEERAATVTKKTYEIWHRRHDYWLL 1731
Query: 651 TTVINICDERWKQPQ 665
+IN RW+ Q
Sbjct: 1732 AGIINHGYARWQDIQ 1746
Score = 55 (24.4 bits), Expect = 1.8e-12, Sum P(5) = 1.8e-12
Identities = 25/112 (22%), Positives = 52/112 (46%)
Query: 930 NNIGEMYNLLNFLQPASFPSLSSFEEKFNDLTTTQKVEE-LKKL-VAPHMLRRLKKDAMQ 987
N GE +++++ A L +++ D T Q + E L VA +++R + +
Sbjct: 1231 NKEGEDSSVIHYDDKAIERLLDRNQDETED-TELQGMNEYLSSFKVAQYVVREEEMGEEE 1289
Query: 988 NIPPKTERMVPVELSSIQAEYYRAMLTKNYQ-----ILRNIGKGVAQQSMLN 1034
+ ER + + S+ +Y+ +L +Y+ + RN+GKG + +N
Sbjct: 1290 EV----EREIIKQEESVDPDYWEKLLRHHYEQQQEDLARNLGKGKRIRKQVN 1337
Score = 54 (24.1 bits), Expect = 7.8e-09, Sum P(3) = 7.8e-09
Identities = 33/168 (19%), Positives = 72/168 (42%)
Query: 434 DDFLVSENHNKILEENLACDTDLDAEVTENLAELSPNVIRSSDEECMKNDIGVDRIQVYR 493
D + EN K EE++ + ++ + E E + +S++E + + +V +
Sbjct: 1555 DGIKIEENSLKE-EESIEGEKEVKSTAPETAIECTQAPAPASEDEKVVVEPPEGEEKVEK 1613
Query: 494 RSVTKECKVTKECKGENAIDLLREDDK---DSDPVAVNGK-----------VQDESAVST 539
V + + E + + A D+ + ++K D P+ V K V ++ +
Sbjct: 1614 AEVKERTEEPMETEPKGAADVEKVEEKSAIDLTPIVVEDKEEKKEEEEKKEVMLQNGETP 1673
Query: 540 EDLGERNDKMVVEDADV-SLRDNEGLTVSEIHITCESTDKDVDVGKKT 586
+DL + K ++ + ++ D G T E+H ++ ++ V KKT
Sbjct: 1674 KDLNDEKQKKNIKQRFMFNIADG-GFT--ELHSLWQNEERAATVTKKT 1718
Score = 50 (22.7 bits), Expect = 2.8e-139, Sum P(5) = 2.8e-139
Identities = 18/78 (23%), Positives = 33/78 (42%)
Query: 201 CSTKPENTSAGVPVEGSSSCPNDDDEKQLNASPTDSLADTKFHPAEEVLPHSQVTKSEQN 260
CS E + S P+ ++E+ P + L++T+ P L + K ++
Sbjct: 11 CSAGSEEEDMDALLNNSLPPPHPENEED----PEEDLSETET-PK---LKKKKKPKKPRD 62
Query: 261 DEVPVEKHEKSSTNGSSG 278
++P K +K SSG
Sbjct: 63 PKIPKSKRQKKELGDSSG 80
Score = 49 (22.3 bits), Expect = 2.9e-154, Sum P(5) = 2.9e-154
Identities = 11/40 (27%), Positives = 24/40 (60%)
Query: 1323 NDMLGSVKATEWNEETTEDQAESPVAAVDDASAENSERKE 1362
ND GS + +W ++ +++Q++ VA+ ++ + ER E
Sbjct: 1339 ND--GSQEDRDWQDDQSDNQSDYSVAS-EEGDEDFDERSE 1375
Score = 47 (21.6 bits), Expect = 5.7e-139, Sum P(5) = 5.7e-139
Identities = 27/134 (20%), Positives = 50/134 (37%)
Query: 216 GSSS-CPNDDDEKQLNASPTDSLADTKFHPAEEVLPHSQVTKSEQNDEVPVEKHEKSSTN 274
GS S C +E+ ++A +SL HP E P ++++E ++ +K K +
Sbjct: 6 GSPSPCSAGSEEEDMDALLNNSLPPP--HPENEEDPEEDLSETE-TPKLKKKKKPKKPRD 62
Query: 275 GS--SGIKFVLAIGASERDRKRKPEVKDEDSQKKLRVDXXXXXXXXXXXXXXXIGTLSPG 332
+ +G S + PE +E+ + LR D +G
Sbjct: 63 PKIPKSKRQKKELGDSSGEG---PEFVEEEEEVALRSDSEGSDYTPGKKKKKKLGPKKEK 119
Query: 333 TSKLHEKQRTNNDE 346
SK K+ ++
Sbjct: 120 KSKSKRKEEEEEED 133
Score = 47 (21.6 bits), Expect = 2.8e-11, Sum P(4) = 2.8e-11
Identities = 15/39 (38%), Positives = 21/39 (53%)
Query: 724 ASEDEL-----PRGKGDCQQSEIVALTEQPEEL--KGGA 755
ASEDE P G+ +++E+ TE+P E KG A
Sbjct: 1594 ASEDEKVVVEPPEGEEKVEKAEVKERTEEPMETEPKGAA 1632
Score = 44 (20.5 bits), Expect = 9.6e-154, Sum P(5) = 9.6e-154
Identities = 10/34 (29%), Positives = 17/34 (50%)
Query: 1339 TEDQAESPVAAVDDA-SAENSERKEENAVTGIEE 1371
T+ +PV +D E + KEE ++ G +E
Sbjct: 1542 TQPNTPAPVPPAEDGIKIEENSLKEEESIEGEKE 1575
Score = 43 (20.2 bits), Expect = 9.8e-08, Sum P(3) = 9.8e-08
Identities = 8/32 (25%), Positives = 16/32 (50%)
Query: 359 KGLDAQRKDELAEETTDPLDKSDKAGVHVNEI 390
+G + K E+ E T +P++ K V ++
Sbjct: 1606 EGEEKVEKAEVKERTEEPMETEPKGAADVEKV 1637
Score = 39 (18.8 bits), Expect = 2.9e-154, Sum P(5) = 2.9e-154
Identities = 11/44 (25%), Positives = 19/44 (43%)
Query: 26 PCGPGLSNGKEENLVTSESPRNTPSAKRRLKNEINADRSSTKKK 69
P P EE+L +E+P+ K + + +S +KK
Sbjct: 30 PPHPENEEDPEEDLSETETPKLKKKKKPKKPRDPKIPKSKRQKK 73
Score = 38 (18.4 bits), Expect = 3.1e-07, Sum P(3) = 3.1e-07
Identities = 41/198 (20%), Positives = 78/198 (39%)
Query: 111 NGKWQCPKCTQKNDQLKPISNLDSISKRARSKIITIKSQSGVKSS--GADKVSQIFGNSI 168
NG+W P+ + + K +S S S + + +Q + A+ +I NS
Sbjct: 1506 NGRWSMPELAEVEEN-KKMSQPGSPSPKTPTPSTPGDTQPNTPAPVPPAEDGIKIEENS- 1563
Query: 169 LARKRSNKGKSVLALGVKSLEKSLDSSQVDVSCSTKPENTSAGVPVEGSSSCPNDDDEKQ 228
L + S +G+ K ++ + + ++ + + P + V VE P + +EK
Sbjct: 1564 LKEEESIEGE-------KEVKSTAPETAIECTQAPAPASEDEKVVVE-----PPEGEEKV 1611
Query: 229 LNASP---TDSLADTKFHPAEEVLPHSQVTKSEQNDEVPVEKHEKSSTNGSSGIKFV-LA 284
A T+ +T+ A +V +V + D P+ +K K V L
Sbjct: 1612 EKAEVKERTEEPMETEPKGAADV---EKVEEKSAIDLTPIVVEDKEEKKEEEEKKEVMLQ 1668
Query: 285 IGASERD---RKRKPEVK 299
G + +D K+K +K
Sbjct: 1669 NGETPKDLNDEKQKKNIK 1686
Score = 37 (18.1 bits), Expect = 2.8e-139, Sum P(5) = 2.8e-139
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 363 AQRKDELAEETTDPLDKSDKAGVHVNE 389
++RK+E EE D K K+ + E
Sbjct: 123 SKRKEEEEEEDDDDDSKEPKSSAQLLE 149
Score = 37 (18.1 bits), Expect = 3.9e-138, Sum P(5) = 3.9e-138
Identities = 14/54 (25%), Positives = 25/54 (46%)
Query: 258 EQNDEVPVEKHEKSSTNGSSGIKFVLAIGA-----SERDRKRKPEVKDEDSQKK 306
E+ +EV + + S + + G K +G S+ RK + E +D+D K
Sbjct: 87 EEEEEVALRSDSEGS-DYTPGKKKKKKLGPKKEKKSKSKRKEEEEEEDDDDDSK 139
>UNIPROTKB|Q14839 [details] [associations]
symbol:CHD4 "Chromodomain-helicase-DNA-binding protein 4"
species:9606 "Homo sapiens" [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0016568 "chromatin modification"
evidence=IEA] [GO:0016581 "NuRD complex" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0005813 "centrosome" evidence=IDA] [GO:0004003
"ATP-dependent DNA helicase activity" evidence=TAS] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=TAS] [GO:0001103 "RNA polymerase II repressing
transcription factor binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=IDA] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR002464 InterPro:IPR012957 InterPro:IPR012958
InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271 Pfam:PF00628
Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005737 GO:GO:0005813 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 GO:GO:0006357 GO:GO:0006351 GO:GO:0016568
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 GO:GO:0004003 InterPro:IPR019786 PROSITE:PS01359
Pathway_Interaction_DB:hdac_classi_pathway InterPro:IPR016197
SUPFAM:SSF54160 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0016581 InterPro:IPR023780 PROSITE:PS00598
HOGENOM:HOG000231124 InterPro:IPR009462 InterPro:IPR009463
Pfam:PF06461 Pfam:PF06465 HOVERGEN:HBG005326 EMBL:X86691
EMBL:AC006064 EMBL:BC038596 IPI:IPI00000846 IPI:IPI00455210
RefSeq:NP_001264.2 UniGene:Hs.162233 PDB:1MM2 PDB:1MM3 PDB:2EE1
PDB:2L5U PDB:2L75 PDBsum:1MM2 PDBsum:1MM3 PDBsum:2EE1 PDBsum:2L5U
PDBsum:2L75 ProteinModelPortal:Q14839 SMR:Q14839 DIP:DIP-31183N
IntAct:Q14839 MINT:MINT-349766 STRING:Q14839 PhosphoSite:Q14839
DMDM:311033360 PaxDb:Q14839 PRIDE:Q14839 DNASU:1108
Ensembl:ENST00000309577 Ensembl:ENST00000357008
Ensembl:ENST00000544484 GeneID:1108 KEGG:hsa:1108 UCSC:uc001qpo.3
UCSC:uc001qpp.3 CTD:1108 GeneCards:GC12M006679 H-InvDB:HIX0201859
HGNC:HGNC:1919 HPA:HPA012008 MIM:603277 neXtProt:NX_Q14839
PharmGKB:PA26455 KO:K11643 OMA:ERMLLCR OrthoDB:EOG4WH8JX
ChiTaRS:CHD4 EvolutionaryTrace:Q14839 GenomeRNAi:1108 NextBio:4598
PMAP-CutDB:Q14839 ArrayExpress:Q14839 Bgee:Q14839 CleanEx:HS_CHD4
Genevestigator:Q14839 GermOnline:ENSG00000111642 Uniprot:Q14839
Length = 1912
Score = 1242 (442.3 bits), Expect = 3.3e-154, Sum P(5) = 3.3e-154
Identities = 274/538 (50%), Positives = 353/538 (65%)
Query: 742 VALTEQPEELK--GGALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLY 799
V QPE L GG L P+Q+E LNWLR W + + ILADEMGLGKTV F+ SLY
Sbjct: 710 VKYERQPEYLDATGGTLHPYQMEGLNWLRFSWAQGTDTILADEMGLGKTVQTAVFLYSLY 769
Query: 800 CEFKAKLPCLVLVPLSTMPNWLAEFALWAPNLNVVEYHGCAKARAIIRQYEWHASD---- 855
E +K P LV PLST+ NW EF +WAP++ VV Y G +RAIIR+ E+ D
Sbjct: 770 KEGHSKGPFLVSAPLSTIINWEREFEMWAPDMYVVTYVGDKDSRAIIRENEFSFEDNAIR 829
Query: 856 ---PDNLNKKTSSYKFNVLLTTYEMILADSSHLRGVPWEVLVVDEGHRXXXXXXXXXXXX 912
+ KK +S KF+VLLT+YE+I D + L + W L+VDE HR
Sbjct: 830 GGKKASRMKKEASVKFHVLLTSYELITIDMAILGSIDWACLIVDEAHRLKNNQSKFFRVL 889
Query: 913 XXXXXQHRVLLTGTPLQNNIGEMYNLLNFLQPASFPSLSSFEEKFNDLTTTQKVEELKKL 972
QH++LLTGTPLQNN+ E+++LLNFL P F +L F E+F D+ ++++L +
Sbjct: 890 NGYSLQHKLLLTGTPLQNNLEELFHLLNFLTPERFHNLEGFLEEFADIAKEDQIKKLHDM 949
Query: 973 VAPHMLRRLKKDAMQNIPPKTERMVPVELSSIQAEYYRAMLTKNYQILRNIGKGVAQQSM 1032
+ PHMLRRLK D +N+P KTE +V VELS +Q +YY+ +LT+N++ L G G Q S+
Sbjct: 950 LGPHMLRRLKADVFKNMPSKTELIVRVELSPMQKKYYKYILTRNFEALNARGGG-NQVSL 1008
Query: 1033 LNIVMQLRKVCNHPYLIP--GTE-PDSGSVEFLHEMRIKASAKLTLLHSMLKVLYKEGHR 1089
LN+VM L+K CNHPYL P E P + + I+AS KL LL MLK L + GHR
Sbjct: 1009 LNVVMDLKKCCNHPYLFPVAAMEAPKMPNGMYDGSALIRASGKLLLLQKMLKNLKEGGHR 1068
Query: 1090 VLIFSQMTKLLDILEDYLNIEFGPKTYERVDGSVSVGDRQAAITRFNQDKSR-FVFLLST 1148
VLIFSQMTK+LD+LED+L E G K YER+DG ++ RQ AI RFN ++ F FLLST
Sbjct: 1069 VLIFSQMTKMLDLLEDFLEHE-GYK-YERIDGGITGNMRQEAIDRFNAPGAQQFCFLLST 1126
Query: 1149 RSCGLGINLATADTVIIYDSDFNPHADIQAMNRAHRIGQSKRLLVYRLVVRASVEERILQ 1208
R+ GLGINLATADTVIIYDSD+NPH DIQA +RAHRIGQ+K++++YR V RASVEERI Q
Sbjct: 1127 RAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQNKKVMIYRFVTRASVEERITQ 1186
Query: 1209 LAKKKLMLDQLFV-----NKSGS--QKEVEDILRWGTEELFNDSPGINGKDMGENNTS 1259
+AKKK+ML L V +K+GS ++E++DIL++GTEELF D G D E S
Sbjct: 1187 VAKKKMMLTHLVVRPGLGSKTGSMSKQELDDILKFGTEELFKDEATDGGGDNKEGEDS 1244
Score = 369 (135.0 bits), Expect = 3.6e-48, Sum P(6) = 3.6e-48
Identities = 133/418 (31%), Positives = 186/418 (44%)
Query: 661 WKQPQRVISLRSSKDGTREAFVKWTGLPYDECTWEKLD----EPALEKYSHLT--DLFVQ 714
W R+++ K G +KW LPYD+ +WE D + L K S+ +L
Sbjct: 621 WMMIHRILNHSVDKKGHVHYLIKWRDLPYDQASWESEDVEIQDYDLFKQSYWNHRELMRG 680
Query: 715 FERQTLKK--DASEDELPRGKGDCQQSEIVALTEQPEELK--GGALFPHQLEALNWLRKC 770
E + KK +L R V QPE L GG L P+Q+E LNWLR
Sbjct: 681 EEGRPGKKLKKVKLRKLERPPETPTVDPTVKYERQPEYLDATGGTLHPYQMEGLNWLRFS 740
Query: 771 WHKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLSTMPNWLAEFALWAPN 830
W + + ILADEMGLGKTV F+ SLY E +K P LV PLST+ NW EF +WAP+
Sbjct: 741 WAQGTDTILADEMGLGKTVQTAVFLYSLYKEGHSKGPFLVSAPLSTIINWEREFEMWAPD 800
Query: 831 LNVVEYHGCAKARAIIRQYEWHASDPDNL---NKKTSSYKFNVLLTTYEMILADSSHLRG 887
+ VV Y G +RAIIR+ E+ S DN KK S K + + +L S L
Sbjct: 801 MYVVTYVGDKDSRAIIRENEF--SFEDNAIRGGKKASRMKKEASVKFH--VLLTSYEL-- 854
Query: 888 VPWEVLVVDEGHRXXXXXXXXXXXXXXXXXQHRVLLTGTPLQNNI---GE--MYNLLNFL 942
+ ++ ++ RVL G LQ+ + G NL
Sbjct: 855 ITIDMAILGSIDWACLIVDEAHRLKNNQSKFFRVL-NGYSLQHKLLLTGTPLQNNLEELF 913
Query: 943 QPASFPSLSSFE--EKF-NDLTTTQKVEELKKLVAPHMLRRLKKDAMQNIPPKTERMVPV 999
+F + F E F + K +++KKL H + L ++ + + +P
Sbjct: 914 HLLNFLTPERFHNLEGFLEEFADIAKEDQIKKL---HDM--LGPHMLRRLKADVFKNMPS 968
Query: 1000 ELSSIQAEYYRAMLTKNYQIL--RNI----GKGVAQQ-SMLNIVMQLRKVCNHPYLIP 1050
+ I M K Y+ + RN +G Q S+LN+VM L+K CNHPYL P
Sbjct: 969 KTELIVRVELSPMQKKYYKYILTRNFEALNARGGGNQVSLLNVVMDLKKCCNHPYLFP 1026
Score = 191 (72.3 bits), Expect = 3.3e-154, Sum P(5) = 3.3e-154
Identities = 29/50 (58%), Positives = 38/50 (76%)
Query: 72 DGYYYE-CVICDLGGNLLCCDSCPRTYHLQCLDPPLKRIPNGKWQCPKCT 120
D ++ E C +C GG LLCCD+CP +YH+ CL+PPL IPNG+W CP+CT
Sbjct: 445 DDHHMEFCRVCKDGGELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCT 494
Score = 178 (67.7 bits), Expect = 1.8e-150, Sum P(4) = 1.8e-150
Identities = 29/90 (32%), Positives = 49/90 (54%)
Query: 40 VTSESPRNTPSAKRRLKNEINADRSSTKKKGNDGYYYE----CVICDLGGNLLCCDSCPR 95
V+ S + ++++L+ + + DGY + C +C GG ++ CD+CPR
Sbjct: 331 VSDGSTSRSSRSRKKLRTTKKKKKGEEEVTAVDGYETDHQDYCEVCQQGGEIILCDTCPR 390
Query: 96 TYHLQCLDPPLKRIPNGKWQCPKCTQKNDQ 125
YH+ CLDP +++ P GKW CP C ++ Q
Sbjct: 391 AYHMVCLDPDMEKAPEGKWSCPHCEKEGIQ 420
Score = 81 (33.6 bits), Expect = 3.6e-48, Sum P(6) = 3.6e-48
Identities = 36/140 (25%), Positives = 70/140 (50%)
Query: 1212 KKLMLDQLFVNKSGSQKEVEDILRWGTEELFND---SPGINGKDMGENNTSIEEAVR-DL 1267
KK+M+ + FV ++ ++ + + + + + PG+ K + +++ ++
Sbjct: 1167 KKVMIYR-FVTRASVEERITQVAK--KKMMLTHLVVRPGLGSKTGSMSKQELDDILKFGT 1223
Query: 1268 EQ--KHRKRGGGLGDVYQDKCTEGSTKIVWDENAIARLLDRSNLQSGSTDLAEGDLENDM 1325
E+ K GG GD +K E S+ I +D+ AI RLLDR+ ++ T+L +G N+
Sbjct: 1224 EELFKDEATDGG-GD---NKEGEDSSVIHYDDKAIERLLDRNQDETEDTEL-QG--MNEY 1276
Query: 1326 LGSVKATEW---NEETTEDQ 1342
L S K ++ EE E++
Sbjct: 1277 LSSFKVAQYVVREEEMGEEE 1296
Score = 79 (32.9 bits), Expect = 3.3e-154, Sum P(5) = 3.3e-154
Identities = 17/53 (32%), Positives = 27/53 (50%)
Query: 596 EPAVTESAQVKGKAVSYEFLVKWVGKSNIHNSWIPESQLKVLAKRKLENYKAK 648
+P ++G+ +F VKW G S H SW+ E QL++ + NY+ K
Sbjct: 526 DPNTPSPKPLEGRP-ERQFFVKWQGMSYWHCSWVSELQLELHCQVMFRNYQRK 577
Score = 75 (31.5 bits), Expect = 8.8e-154, Sum P(5) = 8.8e-154
Identities = 24/64 (37%), Positives = 33/64 (51%)
Query: 678 REAFVKWTGLPYDECTWEKLDEPALEKYSHLTDLFVQFERQTLKKDASEDELPRGK--GD 735
R+ FVKW G+ Y C+W + E LE H +F ++R K D DE P G GD
Sbjct: 541 RQFFVKWQGMSYWHCSW--VSELQLEL--HCQVMFRNYQR---KNDM--DEPPSGDFGGD 591
Query: 736 CQQS 739
++S
Sbjct: 592 EEKS 595
Score = 57 (25.1 bits), Expect = 3.9e-09, Sum P(3) = 3.9e-09
Identities = 40/195 (20%), Positives = 80/195 (41%)
Query: 487 DRIQVYRRSVTKECKVT--KECKG---ENAIDLLREDDKDS-DPVAVNGKVQDESAVSTE 540
D I++ S+ +E + KE K E AI+ + S D V + E V
Sbjct: 1562 DGIKIEENSLKEEESIEGEKEVKSTAPETAIECTQAPAPASEDEKVVVEPPEGEEKVEKA 1621
Query: 541 DLGERNDK-MVVED---ADVS-LRDNEGLTVSEIHITCESTDKDVDVGKKTSGSVAKRVQ 595
++ ER ++ M E ADV + + + ++ I + + K+ + K+ + + +
Sbjct: 1622 EVKERTEEPMETEPKGAADVEKVEEKSAIDLTPIVVEDKEEKKEEEEKKEV---MLQNGE 1678
Query: 596 EPA-VTESAQVKGKAVSYEFLVKWVGKSNIHNSWIPESQLKVLAKRKLENYKAKYG---- 650
P + + Q K + F + G + +H+ W E + + K+ E + ++
Sbjct: 1679 TPKDLNDEKQKKNIKQRFMFNIADGGFTELHSLWQNEERAATVTKKTYEIWHRRHDYWLL 1738
Query: 651 TTVINICDERWKQPQ 665
+IN RW+ Q
Sbjct: 1739 AGIINHGYARWQDIQ 1753
Score = 55 (24.4 bits), Expect = 1.8e-12, Sum P(5) = 1.8e-12
Identities = 25/112 (22%), Positives = 52/112 (46%)
Query: 930 NNIGEMYNLLNFLQPASFPSLSSFEEKFNDLTTTQKVEE-LKKL-VAPHMLRRLKKDAMQ 987
N GE +++++ A L +++ D T Q + E L VA +++R + +
Sbjct: 1238 NKEGEDSSVIHYDDKAIERLLDRNQDETED-TELQGMNEYLSSFKVAQYVVREEEMGEEE 1296
Query: 988 NIPPKTERMVPVELSSIQAEYYRAMLTKNYQ-----ILRNIGKGVAQQSMLN 1034
+ ER + + S+ +Y+ +L +Y+ + RN+GKG + +N
Sbjct: 1297 EV----EREIIKQEESVDPDYWEKLLRHHYEQQQEDLARNLGKGKRIRKQVN 1344
Score = 54 (24.1 bits), Expect = 7.8e-09, Sum P(3) = 7.8e-09
Identities = 33/168 (19%), Positives = 72/168 (42%)
Query: 434 DDFLVSENHNKILEENLACDTDLDAEVTENLAELSPNVIRSSDEECMKNDIGVDRIQVYR 493
D + EN K EE++ + ++ + E E + +S++E + + +V +
Sbjct: 1562 DGIKIEENSLKE-EESIEGEKEVKSTAPETAIECTQAPAPASEDEKVVVEPPEGEEKVEK 1620
Query: 494 RSVTKECKVTKECKGENAIDLLREDDK---DSDPVAVNGK-----------VQDESAVST 539
V + + E + + A D+ + ++K D P+ V K V ++ +
Sbjct: 1621 AEVKERTEEPMETEPKGAADVEKVEEKSAIDLTPIVVEDKEEKKEEEEKKEVMLQNGETP 1680
Query: 540 EDLGERNDKMVVEDADV-SLRDNEGLTVSEIHITCESTDKDVDVGKKT 586
+DL + K ++ + ++ D G T E+H ++ ++ V KKT
Sbjct: 1681 KDLNDEKQKKNIKQRFMFNIADG-GFT--ELHSLWQNEERAATVTKKT 1725
Score = 49 (22.3 bits), Expect = 3.3e-154, Sum P(5) = 3.3e-154
Identities = 11/40 (27%), Positives = 24/40 (60%)
Query: 1323 NDMLGSVKATEWNEETTEDQAESPVAAVDDASAENSERKE 1362
ND GS + +W ++ +++Q++ VA+ ++ + ER E
Sbjct: 1346 ND--GSQEDRDWQDDQSDNQSDYSVAS-EEGDEDFDERSE 1382
Score = 47 (21.6 bits), Expect = 6.7e-139, Sum P(5) = 6.7e-139
Identities = 28/140 (20%), Positives = 51/140 (36%)
Query: 216 GSSS-CPNDDDEKQLNASPTDSLADTKFHPAEEVLPHSQVTKSE----QNDEVPVEKHE- 269
GS S C +E+ ++A +SL HP E P ++++E + + P + +
Sbjct: 6 GSPSPCSAGSEEEDMDALLNNSLPPP--HPENEEDPEEDLSETETPKLKKKKKPKKPRDP 63
Query: 270 ---KSSTNGSSGIKFVLAIGASERDRKRKPEVKDEDSQKKLRVDXXXXXXXXXXXXXXXI 326
KS + +G S + PE +E+ + LR D +
Sbjct: 64 KIPKSKRQKKERMLLCRQLGDSSGEG---PEFVEEEEEVALRSDSEGSDYTPGKKKKKKL 120
Query: 327 GTLSPGTSKLHEKQRTNNDE 346
G SK K+ ++
Sbjct: 121 GPKKEKKSKSKRKEEEEEED 140
Score = 47 (21.6 bits), Expect = 2.8e-11, Sum P(4) = 2.8e-11
Identities = 15/39 (38%), Positives = 21/39 (53%)
Query: 724 ASEDEL-----PRGKGDCQQSEIVALTEQPEEL--KGGA 755
ASEDE P G+ +++E+ TE+P E KG A
Sbjct: 1601 ASEDEKVVVEPPEGEEKVEKAEVKERTEEPMETEPKGAA 1639
Score = 44 (20.5 bits), Expect = 1.1e-153, Sum P(5) = 1.1e-153
Identities = 10/34 (29%), Positives = 17/34 (50%)
Query: 1339 TEDQAESPVAAVDDA-SAENSERKEENAVTGIEE 1371
T+ +PV +D E + KEE ++ G +E
Sbjct: 1549 TQPNTPAPVPPAEDGIKIEENSLKEEESIEGEKE 1582
Score = 43 (20.2 bits), Expect = 9.9e-08, Sum P(3) = 9.9e-08
Identities = 8/32 (25%), Positives = 16/32 (50%)
Query: 359 KGLDAQRKDELAEETTDPLDKSDKAGVHVNEI 390
+G + K E+ E T +P++ K V ++
Sbjct: 1613 EGEEKVEKAEVKERTEEPMETEPKGAADVEKV 1644
Score = 41 (19.5 bits), Expect = 4.4e-136, Sum P(4) = 4.4e-136
Identities = 15/52 (28%), Positives = 25/52 (48%)
Query: 366 KDELAEETTDPLDKSDKAGVHVNEIPLCKDIVPFELQQVDRVLGCRVKGDDT 417
+++L+E T L K K + P I + Q+ +R+L CR GD +
Sbjct: 40 EEDLSETETPKLKKKKKP-----KKPRDPKIPKSKRQKKERMLLCRQLGDSS 86
Score = 39 (18.8 bits), Expect = 3.3e-154, Sum P(5) = 3.3e-154
Identities = 11/44 (25%), Positives = 19/44 (43%)
Query: 26 PCGPGLSNGKEENLVTSESPRNTPSAKRRLKNEINADRSSTKKK 69
P P EE+L +E+P+ K + + +S +KK
Sbjct: 30 PPHPENEEDPEEDLSETETPKLKKKKKPKKPRDPKIPKSKRQKK 73
Score = 38 (18.4 bits), Expect = 3.1e-07, Sum P(3) = 3.1e-07
Identities = 41/198 (20%), Positives = 78/198 (39%)
Query: 111 NGKWQCPKCTQKNDQLKPISNLDSISKRARSKIITIKSQSGVKSS--GADKVSQIFGNSI 168
NG+W P+ + + K +S S S + + +Q + A+ +I NS
Sbjct: 1513 NGRWSMPELAEVEEN-KKMSQPGSPSPKTPTPSTPGDTQPNTPAPVPPAEDGIKIEENS- 1570
Query: 169 LARKRSNKGKSVLALGVKSLEKSLDSSQVDVSCSTKPENTSAGVPVEGSSSCPNDDDEKQ 228
L + S +G+ K ++ + + ++ + + P + V VE P + +EK
Sbjct: 1571 LKEEESIEGE-------KEVKSTAPETAIECTQAPAPASEDEKVVVE-----PPEGEEKV 1618
Query: 229 LNASP---TDSLADTKFHPAEEVLPHSQVTKSEQNDEVPVEKHEKSSTNGSSGIKFV-LA 284
A T+ +T+ A +V +V + D P+ +K K V L
Sbjct: 1619 EKAEVKERTEEPMETEPKGAADV---EKVEEKSAIDLTPIVVEDKEEKKEEEEKKEVMLQ 1675
Query: 285 IGASERD---RKRKPEVK 299
G + +D K+K +K
Sbjct: 1676 NGETPKDLNDEKQKKNIK 1693
Score = 37 (18.1 bits), Expect = 6.7e-139, Sum P(5) = 6.7e-139
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 363 AQRKDELAEETTDPLDKSDKAGVHVNE 389
++RK+E EE D K K+ + E
Sbjct: 130 SKRKEEEEEEDDDDDSKEPKSSAQLLE 156
Score = 37 (18.1 bits), Expect = 4.6e-138, Sum P(5) = 4.6e-138
Identities = 14/54 (25%), Positives = 25/54 (46%)
Query: 258 EQNDEVPVEKHEKSSTNGSSGIKFVLAIGA-----SERDRKRKPEVKDEDSQKK 306
E+ +EV + + S + + G K +G S+ RK + E +D+D K
Sbjct: 94 EEEEEVALRSDSEGS-DYTPGKKKKKKLGPKKEKKSKSKRKEEEEEEDDDDDSK 146
>UNIPROTKB|F1SLR5 [details] [associations]
symbol:CHD4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0016581 "NuRD complex" evidence=IEA] [GO:0008134
"transcription factor binding" evidence=IEA] [GO:0005813
"centrosome" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR002464 InterPro:IPR012957 InterPro:IPR012958
InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271 Pfam:PF00628
Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005737 GO:GO:0005813 GO:GO:0006355 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 InterPro:IPR019786
PROSITE:PS01359 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GO:GO:0016581 InterPro:IPR023780 GeneTree:ENSGT00560000076896
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
CTD:1108 KO:K11643 OMA:ERMLLCR EMBL:CU914489 EMBL:GACC01000070
RefSeq:XP_003126577.3 UniGene:Ssc.25044 Ensembl:ENSSSCT00000000759
GeneID:100515610 KEGG:ssc:100515610 Uniprot:F1SLR5
Length = 1912
Score = 1242 (442.3 bits), Expect = 3.3e-154, Sum P(5) = 3.3e-154
Identities = 274/538 (50%), Positives = 353/538 (65%)
Query: 742 VALTEQPEELK--GGALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLY 799
V QPE L GG L P+Q+E LNWLR W + + ILADEMGLGKTV F+ SLY
Sbjct: 710 VKYERQPEYLDATGGTLHPYQMEGLNWLRFSWAQGTDTILADEMGLGKTVQTAVFLYSLY 769
Query: 800 CEFKAKLPCLVLVPLSTMPNWLAEFALWAPNLNVVEYHGCAKARAIIRQYEWHASD---- 855
E +K P LV PLST+ NW EF +WAP++ VV Y G +RAIIR+ E+ D
Sbjct: 770 KEGHSKGPFLVSAPLSTIINWEREFEMWAPDMYVVTYVGDKDSRAIIRENEFSFEDNAIR 829
Query: 856 ---PDNLNKKTSSYKFNVLLTTYEMILADSSHLRGVPWEVLVVDEGHRXXXXXXXXXXXX 912
+ KK +S KF+VLLT+YE+I D + L + W L+VDE HR
Sbjct: 830 GGKKASRMKKEASVKFHVLLTSYELITIDMAILGSIDWACLIVDEAHRLKNNQSKFFRVL 889
Query: 913 XXXXXQHRVLLTGTPLQNNIGEMYNLLNFLQPASFPSLSSFEEKFNDLTTTQKVEELKKL 972
QH++LLTGTPLQNN+ E+++LLNFL P F +L F E+F D+ ++++L +
Sbjct: 890 NGYSLQHKLLLTGTPLQNNLEELFHLLNFLTPERFHNLEGFLEEFADIAKEDQIKKLHDM 949
Query: 973 VAPHMLRRLKKDAMQNIPPKTERMVPVELSSIQAEYYRAMLTKNYQILRNIGKGVAQQSM 1032
+ PHMLRRLK D +N+P KTE +V VELS +Q +YY+ +LT+N++ L G G Q S+
Sbjct: 950 LGPHMLRRLKADVFKNMPSKTELIVRVELSPMQKKYYKYILTRNFEALNARGGG-NQVSL 1008
Query: 1033 LNIVMQLRKVCNHPYLIP--GTE-PDSGSVEFLHEMRIKASAKLTLLHSMLKVLYKEGHR 1089
LN+VM L+K CNHPYL P E P + + I+AS KL LL MLK L + GHR
Sbjct: 1009 LNVVMDLKKCCNHPYLFPVAAMEAPKMPNGMYDGSALIRASGKLLLLQKMLKNLKEGGHR 1068
Query: 1090 VLIFSQMTKLLDILEDYLNIEFGPKTYERVDGSVSVGDRQAAITRFNQDKSR-FVFLLST 1148
VLIFSQMTK+LD+LED+L E G K YER+DG ++ RQ AI RFN ++ F FLLST
Sbjct: 1069 VLIFSQMTKMLDLLEDFLEHE-GYK-YERIDGGITGNMRQEAIDRFNAPGAQQFCFLLST 1126
Query: 1149 RSCGLGINLATADTVIIYDSDFNPHADIQAMNRAHRIGQSKRLLVYRLVVRASVEERILQ 1208
R+ GLGINLATADTVIIYDSD+NPH DIQA +RAHRIGQ+K++++YR V RASVEERI Q
Sbjct: 1127 RAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQNKKVMIYRFVTRASVEERITQ 1186
Query: 1209 LAKKKLMLDQLFV-----NKSGS--QKEVEDILRWGTEELFNDSPGINGKDMGENNTS 1259
+AKKK+ML L V +K+GS ++E++DIL++GTEELF D G D E S
Sbjct: 1187 VAKKKMMLTHLVVRPGLGSKTGSMSKQELDDILKFGTEELFKDEATDGGGDNKEGEDS 1244
Score = 369 (135.0 bits), Expect = 3.0e-48, Sum P(5) = 3.0e-48
Identities = 133/418 (31%), Positives = 186/418 (44%)
Query: 661 WKQPQRVISLRSSKDGTREAFVKWTGLPYDECTWEKLD----EPALEKYSHLT--DLFVQ 714
W R+++ K G +KW LPYD+ +WE D + L K S+ +L
Sbjct: 621 WMMIHRILNHSVDKKGHVHYLIKWRDLPYDQASWESEDVEIQDYDLFKQSYWNHRELMRG 680
Query: 715 FERQTLKK--DASEDELPRGKGDCQQSEIVALTEQPEELK--GGALFPHQLEALNWLRKC 770
E + KK +L R V QPE L GG L P+Q+E LNWLR
Sbjct: 681 EEGRPGKKLKKVKLRKLERPPETPTVDPTVKYERQPEYLDATGGTLHPYQMEGLNWLRFS 740
Query: 771 WHKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLSTMPNWLAEFALWAPN 830
W + + ILADEMGLGKTV F+ SLY E +K P LV PLST+ NW EF +WAP+
Sbjct: 741 WAQGTDTILADEMGLGKTVQTAVFLYSLYKEGHSKGPFLVSAPLSTIINWEREFEMWAPD 800
Query: 831 LNVVEYHGCAKARAIIRQYEWHASDPDNL---NKKTSSYKFNVLLTTYEMILADSSHLRG 887
+ VV Y G +RAIIR+ E+ S DN KK S K + + +L S L
Sbjct: 801 MYVVTYVGDKDSRAIIRENEF--SFEDNAIRGGKKASRMKKEASVKFH--VLLTSYEL-- 854
Query: 888 VPWEVLVVDEGHRXXXXXXXXXXXXXXXXXQHRVLLTGTPLQNNI---GE--MYNLLNFL 942
+ ++ ++ RVL G LQ+ + G NL
Sbjct: 855 ITIDMAILGSIDWACLIVDEAHRLKNNQSKFFRVL-NGYSLQHKLLLTGTPLQNNLEELF 913
Query: 943 QPASFPSLSSFE--EKF-NDLTTTQKVEELKKLVAPHMLRRLKKDAMQNIPPKTERMVPV 999
+F + F E F + K +++KKL H + L ++ + + +P
Sbjct: 914 HLLNFLTPERFHNLEGFLEEFADIAKEDQIKKL---HDM--LGPHMLRRLKADVFKNMPS 968
Query: 1000 ELSSIQAEYYRAMLTKNYQIL--RNI----GKGVAQQ-SMLNIVMQLRKVCNHPYLIP 1050
+ I M K Y+ + RN +G Q S+LN+VM L+K CNHPYL P
Sbjct: 969 KTELIVRVELSPMQKKYYKYILTRNFEALNARGGGNQVSLLNVVMDLKKCCNHPYLFP 1026
Score = 191 (72.3 bits), Expect = 3.3e-154, Sum P(5) = 3.3e-154
Identities = 29/50 (58%), Positives = 38/50 (76%)
Query: 72 DGYYYE-CVICDLGGNLLCCDSCPRTYHLQCLDPPLKRIPNGKWQCPKCT 120
D ++ E C +C GG LLCCD+CP +YH+ CL+PPL IPNG+W CP+CT
Sbjct: 445 DDHHMEFCRVCKDGGELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCT 494
Score = 178 (67.7 bits), Expect = 1.8e-150, Sum P(4) = 1.8e-150
Identities = 29/90 (32%), Positives = 49/90 (54%)
Query: 40 VTSESPRNTPSAKRRLKNEINADRSSTKKKGNDGYYYE----CVICDLGGNLLCCDSCPR 95
V+ S + ++++L+ + + DGY + C +C GG ++ CD+CPR
Sbjct: 331 VSDGSTSRSSRSRKKLRTTKKKKKGEEEVTAVDGYETDHQDYCEVCQQGGEIILCDTCPR 390
Query: 96 TYHLQCLDPPLKRIPNGKWQCPKCTQKNDQ 125
YH+ CLDP +++ P GKW CP C ++ Q
Sbjct: 391 AYHMVCLDPDMEKAPEGKWSCPHCEKEGIQ 420
Score = 81 (33.6 bits), Expect = 3.0e-48, Sum P(5) = 3.0e-48
Identities = 36/140 (25%), Positives = 70/140 (50%)
Query: 1212 KKLMLDQLFVNKSGSQKEVEDILRWGTEELFND---SPGINGKDMGENNTSIEEAVR-DL 1267
KK+M+ + FV ++ ++ + + + + + PG+ K + +++ ++
Sbjct: 1167 KKVMIYR-FVTRASVEERITQVAK--KKMMLTHLVVRPGLGSKTGSMSKQELDDILKFGT 1223
Query: 1268 EQ--KHRKRGGGLGDVYQDKCTEGSTKIVWDENAIARLLDRSNLQSGSTDLAEGDLENDM 1325
E+ K GG GD +K E S+ I +D+ AI RLLDR+ ++ T+L +G N+
Sbjct: 1224 EELFKDEATDGG-GD---NKEGEDSSVIHYDDKAIERLLDRNQDETEDTEL-QG--MNEY 1276
Query: 1326 LGSVKATEW---NEETTEDQ 1342
L S K ++ EE E++
Sbjct: 1277 LSSFKVAQYVVREEEMGEEE 1296
Score = 79 (32.9 bits), Expect = 3.3e-154, Sum P(5) = 3.3e-154
Identities = 17/53 (32%), Positives = 27/53 (50%)
Query: 596 EPAVTESAQVKGKAVSYEFLVKWVGKSNIHNSWIPESQLKVLAKRKLENYKAK 648
+P ++G+ +F VKW G S H SW+ E QL++ + NY+ K
Sbjct: 526 DPNTPSPKPLEGRP-ERQFFVKWQGMSYWHCSWVSELQLELHCQVMFRNYQRK 577
Score = 75 (31.5 bits), Expect = 8.8e-154, Sum P(5) = 8.8e-154
Identities = 24/64 (37%), Positives = 33/64 (51%)
Query: 678 REAFVKWTGLPYDECTWEKLDEPALEKYSHLTDLFVQFERQTLKKDASEDELPRGK--GD 735
R+ FVKW G+ Y C+W + E LE H +F ++R K D DE P G GD
Sbjct: 541 RQFFVKWQGMSYWHCSW--VSELQLEL--HCQVMFRNYQR---KNDM--DEPPSGDFGGD 591
Query: 736 CQQS 739
++S
Sbjct: 592 EEKS 595
Score = 55 (24.4 bits), Expect = 1.8e-12, Sum P(5) = 1.8e-12
Identities = 25/112 (22%), Positives = 52/112 (46%)
Query: 930 NNIGEMYNLLNFLQPASFPSLSSFEEKFNDLTTTQKVEE-LKKL-VAPHMLRRLKKDAMQ 987
N GE +++++ A L +++ D T Q + E L VA +++R + +
Sbjct: 1238 NKEGEDSSVIHYDDKAIERLLDRNQDETED-TELQGMNEYLSSFKVAQYVVREEEMGEEE 1296
Query: 988 NIPPKTERMVPVELSSIQAEYYRAMLTKNYQ-----ILRNIGKGVAQQSMLN 1034
+ ER + + S+ +Y+ +L +Y+ + RN+GKG + +N
Sbjct: 1297 EV----EREIIKQEESVDPDYWEKLLRHHYEQQQEDLARNLGKGKRIRKQVN 1344
Score = 53 (23.7 bits), Expect = 2.4e-137, Sum P(4) = 2.4e-137
Identities = 29/140 (20%), Positives = 51/140 (36%)
Query: 216 GSSS-CPNDDDEKQLNASPTDSLADTKFHPAEEVLPHSQVTKSE----QNDEVPVEKHE- 269
GS S C +E+ ++A +SL HP E P ++++E + + P + +
Sbjct: 6 GSPSPCSAGSEEEDMDALLNNSLPPP--HPENEEDPEEDLSEAETPKLKKKKKPKKPRDP 63
Query: 270 ---KSSTNGSSGIKFVLAIGASERDRKRKPEVKDEDSQKKLRVDXXXXXXXXXXXXXXXI 326
KS + +G S + PE +E+ + LR D +
Sbjct: 64 KIPKSKRQKKERVLLCRQLGDSSGEG---PEFVEEEEEVALRSDSEGSDYTPGKKKKKKL 120
Query: 327 GTLSPGTSKLHEKQRTNNDE 346
G SK K+ D+
Sbjct: 121 GPKKEKKSKSKRKEEEEEDD 140
Score = 51 (23.0 bits), Expect = 1.6e-08, Sum P(3) = 1.6e-08
Identities = 39/194 (20%), Positives = 75/194 (38%)
Query: 487 DRIQVYRRSVTKE--CKVTKECKGENAIDLLREDDKDSDPVAVNGKV-----QDESAVST 539
D I++ S+ +E + KE K A + E + P + + KV + E V
Sbjct: 1562 DGIKIEENSLKEEESAEGEKEVKSA-APEATVECTQPPVPASEDEKVLIEPPEGEEKVEK 1620
Query: 540 EDLGERNDKMVVED----ADVSLRDNEGLTVSEIHITCESTDKDVDVGKKTSGSVAKRVQ 595
++ ER ++ + D ADV + E I I E ++ + +K +
Sbjct: 1621 AEVKERTEEPMETDPKGVADVE-KAEEKAAGDLIPIVVEDKEEKKEEEEKKEVMLQNGET 1679
Query: 596 EPAVTESAQVKGKAVSYEFLVKWVGKSNIHNSWIPESQLKVLAKRKLENYKAKYG----T 651
+ + Q K + F + G + +H+ W E + + K+ E + ++
Sbjct: 1680 PKDLNDEKQKKNIKQRFMFNIADGGFTELHSLWQNEERAATVTKKTYEIWHRRHDYWLLA 1739
Query: 652 TVINICDERWKQPQ 665
+IN RW+ Q
Sbjct: 1740 GIINHGYARWQDIQ 1753
Score = 49 (22.3 bits), Expect = 3.3e-154, Sum P(5) = 3.3e-154
Identities = 11/40 (27%), Positives = 24/40 (60%)
Query: 1323 NDMLGSVKATEWNEETTEDQAESPVAAVDDASAENSERKE 1362
ND GS + +W ++ +++Q++ VA+ ++ + ER E
Sbjct: 1346 ND--GSQEDRDWQDDQSDNQSDYSVAS-EEGDEDFDERSE 1382
Score = 45 (20.9 bits), Expect = 6.3e-08, Sum P(3) = 6.3e-08
Identities = 12/46 (26%), Positives = 22/46 (47%)
Query: 359 KGLDAQRKDELAEETTDPLDKSDK--AGVHVNEIPLCKDIVPFELQ 402
+G + K E+ E T +P++ K A V E D++P ++
Sbjct: 1613 EGEEKVEKAEVKERTEEPMETDPKGVADVEKAEEKAAGDLIPIVVE 1658
Score = 44 (20.5 bits), Expect = 2.1e-136, Sum P(4) = 2.1e-136
Identities = 16/52 (30%), Positives = 25/52 (48%)
Query: 366 KDELAEETTDPLDKSDKAGVHVNEIPLCKDIVPFELQQVDRVLGCRVKGDDT 417
+++L+E T L K K + P I + Q+ +RVL CR GD +
Sbjct: 40 EEDLSEAETPKLKKKKKP-----KKPRDPKIPKSKRQKKERVLLCRQLGDSS 86
Score = 44 (20.5 bits), Expect = 5.6e-11, Sum P(4) = 5.6e-11
Identities = 12/32 (37%), Positives = 18/32 (56%)
Query: 724 ASEDEL-----PRGKGDCQQSEIVALTEQPEE 750
ASEDE P G+ +++E+ TE+P E
Sbjct: 1601 ASEDEKVLIEPPEGEEKVEKAEVKERTEEPME 1632
Score = 44 (20.5 bits), Expect = 7.9e-08, Sum P(3) = 7.9e-08
Identities = 39/176 (22%), Positives = 67/176 (38%)
Query: 111 NGKWQCPKCTQKNDQLKPISNLDSISKRARSKIITIKSQSGVKSSG--ADKVSQIFGNSI 168
NG+W P+ + + K +S S S + + +Q + A+ +I NS
Sbjct: 1513 NGRWSMPELAEVEEN-KKMSQPGSPSPKTPTPSTPGDTQPNTPAPAPPAEDGIKIEENS- 1570
Query: 169 LARKRSNKGKSVLALGVKSLEKSLDSSQVDVSCSTKPENTSAGV-PVEGSSSCPNDD-DE 226
L + S +G+ + E +++ +Q V S E+ + P EG + E
Sbjct: 1571 LKEEESAEGEKEVKSAAP--EATVECTQPPVPAS---EDEKVLIEPPEGEEKVEKAEVKE 1625
Query: 227 KQLNASPTDSLADTKFHPAEE-----VLPHSQVTKSEQNDEVPVEKHEKSSTNGSS 277
+ TD AEE ++P K E+ +E EK E NG +
Sbjct: 1626 RTEEPMETDPKGVADVEKAEEKAAGDLIPIVVEDKEEKKEEE--EKKEVMLQNGET 1679
Score = 39 (18.8 bits), Expect = 3.3e-154, Sum P(5) = 3.3e-154
Identities = 11/44 (25%), Positives = 19/44 (43%)
Query: 26 PCGPGLSNGKEENLVTSESPRNTPSAKRRLKNEINADRSSTKKK 69
P P EE+L +E+P+ K + + +S +KK
Sbjct: 30 PPHPENEEDPEEDLSEAETPKLKKKKKPKKPRDPKIPKSKRQKK 73
Score = 39 (18.8 bits), Expect = 7.2e-136, Sum P(4) = 7.2e-136
Identities = 31/116 (26%), Positives = 43/116 (37%)
Query: 205 PENTSAGVPVEGSSSCPNDD-DEKQLNASPTD-SLADTKFHPAEEVLPHSQVTKSEQNDE 262
PEN P E S +K+ P D + +K E VL Q+ S
Sbjct: 33 PENEED--PEEDLSEAETPKLKKKKKPKKPRDPKIPKSKRQKKERVLLCRQLGDSSGEGP 90
Query: 263 VPVEKHE----KSSTNGSS---GIKFVLAIGA-----SERDRKRKPEVKDEDSQKK 306
VE+ E +S + GS G K +G S+ RK + E D+D K
Sbjct: 91 EFVEEEEEVALRSDSEGSDYTPGKKKKKKLGPKKEKKSKSKRKEEEEEDDDDDDSK 146
Score = 37 (18.1 bits), Expect = 1.2e-135, Sum P(4) = 1.2e-135
Identities = 13/42 (30%), Positives = 19/42 (45%)
Query: 115 QCPKCTQKNDQLKPISNLDSISKRARSKIITIKSQSGVKSSG 156
+ PK +K KP SKR + + + + Q G SSG
Sbjct: 47 ETPKLKKKKKPKKPRDPKIPKSKRQKKERVLLCRQLG-DSSG 87
>UNIPROTKB|E2RHA0 [details] [associations]
symbol:CHD4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012957 InterPro:IPR012958 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00628 Pfam:PF08073 Pfam:PF08074
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194
SMART:SM00184 SMART:SM00249 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR023780 GeneTree:ENSGT00560000076896
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
CTD:1108 KO:K11643 EMBL:AAEX03015287 RefSeq:XP_867754.2
Ensembl:ENSCAFT00000023774 GeneID:477714 KEGG:cfa:477714
Uniprot:E2RHA0
Length = 1912
Score = 1242 (442.3 bits), Expect = 3.3e-154, Sum P(5) = 3.3e-154
Identities = 274/538 (50%), Positives = 353/538 (65%)
Query: 742 VALTEQPEELK--GGALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLY 799
V QPE L GG L P+Q+E LNWLR W + + ILADEMGLGKTV F+ SLY
Sbjct: 710 VKYERQPEYLDATGGTLHPYQMEGLNWLRFSWAQGTDTILADEMGLGKTVQTAVFLYSLY 769
Query: 800 CEFKAKLPCLVLVPLSTMPNWLAEFALWAPNLNVVEYHGCAKARAIIRQYEWHASD---- 855
E +K P LV PLST+ NW EF +WAP++ VV Y G +RAIIR+ E+ D
Sbjct: 770 KEGHSKGPFLVSAPLSTIINWEREFEMWAPDMYVVTYVGDKDSRAIIRENEFSFEDNAIR 829
Query: 856 ---PDNLNKKTSSYKFNVLLTTYEMILADSSHLRGVPWEVLVVDEGHRXXXXXXXXXXXX 912
+ KK +S KF+VLLT+YE+I D + L + W L+VDE HR
Sbjct: 830 GGKKASRMKKEASVKFHVLLTSYELITIDMAILGSIDWACLIVDEAHRLKNNQSKFFRVL 889
Query: 913 XXXXXQHRVLLTGTPLQNNIGEMYNLLNFLQPASFPSLSSFEEKFNDLTTTQKVEELKKL 972
QH++LLTGTPLQNN+ E+++LLNFL P F +L F E+F D+ ++++L +
Sbjct: 890 NGYSLQHKLLLTGTPLQNNLEELFHLLNFLTPERFHNLEGFLEEFADIAKEDQIKKLHDM 949
Query: 973 VAPHMLRRLKKDAMQNIPPKTERMVPVELSSIQAEYYRAMLTKNYQILRNIGKGVAQQSM 1032
+ PHMLRRLK D +N+P KTE +V VELS +Q +YY+ +LT+N++ L G G Q S+
Sbjct: 950 LGPHMLRRLKADVFKNMPSKTELIVRVELSPMQKKYYKYILTRNFEALNARGGG-NQVSL 1008
Query: 1033 LNIVMQLRKVCNHPYLIP--GTE-PDSGSVEFLHEMRIKASAKLTLLHSMLKVLYKEGHR 1089
LN+VM L+K CNHPYL P E P + + I+AS KL LL MLK L + GHR
Sbjct: 1009 LNVVMDLKKCCNHPYLFPVAAMEAPKMPNGMYDGSALIRASGKLLLLQKMLKNLKEGGHR 1068
Query: 1090 VLIFSQMTKLLDILEDYLNIEFGPKTYERVDGSVSVGDRQAAITRFNQDKSR-FVFLLST 1148
VLIFSQMTK+LD+LED+L E G K YER+DG ++ RQ AI RFN ++ F FLLST
Sbjct: 1069 VLIFSQMTKMLDLLEDFLEHE-GYK-YERIDGGITGNMRQEAIDRFNAPGAQQFCFLLST 1126
Query: 1149 RSCGLGINLATADTVIIYDSDFNPHADIQAMNRAHRIGQSKRLLVYRLVVRASVEERILQ 1208
R+ GLGINLATADTVIIYDSD+NPH DIQA +RAHRIGQ+K++++YR V RASVEERI Q
Sbjct: 1127 RAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQNKKVMIYRFVTRASVEERITQ 1186
Query: 1209 LAKKKLMLDQLFV-----NKSGS--QKEVEDILRWGTEELFNDSPGINGKDMGENNTS 1259
+AKKK+ML L V +K+GS ++E++DIL++GTEELF D G D E S
Sbjct: 1187 VAKKKMMLTHLVVRPGLGSKTGSMSKQELDDILKFGTEELFKDEATDGGGDNKEGEDS 1244
Score = 369 (135.0 bits), Expect = 7.0e-48, Sum P(6) = 7.0e-48
Identities = 133/418 (31%), Positives = 186/418 (44%)
Query: 661 WKQPQRVISLRSSKDGTREAFVKWTGLPYDECTWEKLD----EPALEKYSHLT--DLFVQ 714
W R+++ K G +KW LPYD+ +WE D + L K S+ +L
Sbjct: 621 WMMIHRILNHSVDKKGHVHYLIKWRDLPYDQASWESEDVEIQDYDLFKQSYWNHRELMRG 680
Query: 715 FERQTLKK--DASEDELPRGKGDCQQSEIVALTEQPEELK--GGALFPHQLEALNWLRKC 770
E + KK +L R V QPE L GG L P+Q+E LNWLR
Sbjct: 681 EEGRPGKKLKKVKLRKLERPPETPTVDPTVKYERQPEYLDATGGTLHPYQMEGLNWLRFS 740
Query: 771 WHKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLSTMPNWLAEFALWAPN 830
W + + ILADEMGLGKTV F+ SLY E +K P LV PLST+ NW EF +WAP+
Sbjct: 741 WAQGTDTILADEMGLGKTVQTAVFLYSLYKEGHSKGPFLVSAPLSTIINWEREFEMWAPD 800
Query: 831 LNVVEYHGCAKARAIIRQYEWHASDPDNL---NKKTSSYKFNVLLTTYEMILADSSHLRG 887
+ VV Y G +RAIIR+ E+ S DN KK S K + + +L S L
Sbjct: 801 MYVVTYVGDKDSRAIIRENEF--SFEDNAIRGGKKASRMKKEASVKFH--VLLTSYEL-- 854
Query: 888 VPWEVLVVDEGHRXXXXXXXXXXXXXXXXXQHRVLLTGTPLQNNI---GE--MYNLLNFL 942
+ ++ ++ RVL G LQ+ + G NL
Sbjct: 855 ITIDMAILGSIDWACLIVDEAHRLKNNQSKFFRVL-NGYSLQHKLLLTGTPLQNNLEELF 913
Query: 943 QPASFPSLSSFE--EKF-NDLTTTQKVEELKKLVAPHMLRRLKKDAMQNIPPKTERMVPV 999
+F + F E F + K +++KKL H + L ++ + + +P
Sbjct: 914 HLLNFLTPERFHNLEGFLEEFADIAKEDQIKKL---HDM--LGPHMLRRLKADVFKNMPS 968
Query: 1000 ELSSIQAEYYRAMLTKNYQIL--RNI----GKGVAQQ-SMLNIVMQLRKVCNHPYLIP 1050
+ I M K Y+ + RN +G Q S+LN+VM L+K CNHPYL P
Sbjct: 969 KTELIVRVELSPMQKKYYKYILTRNFEALNARGGGNQVSLLNVVMDLKKCCNHPYLFP 1026
Score = 191 (72.3 bits), Expect = 3.3e-154, Sum P(5) = 3.3e-154
Identities = 29/50 (58%), Positives = 38/50 (76%)
Query: 72 DGYYYE-CVICDLGGNLLCCDSCPRTYHLQCLDPPLKRIPNGKWQCPKCT 120
D ++ E C +C GG LLCCD+CP +YH+ CL+PPL IPNG+W CP+CT
Sbjct: 445 DDHHMEFCRVCKDGGELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCT 494
Score = 178 (67.7 bits), Expect = 1.8e-150, Sum P(4) = 1.8e-150
Identities = 29/90 (32%), Positives = 49/90 (54%)
Query: 40 VTSESPRNTPSAKRRLKNEINADRSSTKKKGNDGYYYE----CVICDLGGNLLCCDSCPR 95
V+ S + ++++L+ + + DGY + C +C GG ++ CD+CPR
Sbjct: 331 VSDGSTSRSSRSRKKLRTTKKKKKGEEEVTAVDGYETDHQDYCEVCQQGGEIILCDTCPR 390
Query: 96 TYHLQCLDPPLKRIPNGKWQCPKCTQKNDQ 125
YH+ CLDP +++ P GKW CP C ++ Q
Sbjct: 391 AYHMVCLDPDMEKAPEGKWSCPHCEKEGIQ 420
Score = 81 (33.6 bits), Expect = 7.0e-48, Sum P(6) = 7.0e-48
Identities = 36/140 (25%), Positives = 70/140 (50%)
Query: 1212 KKLMLDQLFVNKSGSQKEVEDILRWGTEELFND---SPGINGKDMGENNTSIEEAVR-DL 1267
KK+M+ + FV ++ ++ + + + + + PG+ K + +++ ++
Sbjct: 1167 KKVMIYR-FVTRASVEERITQVAK--KKMMLTHLVVRPGLGSKTGSMSKQELDDILKFGT 1223
Query: 1268 EQ--KHRKRGGGLGDVYQDKCTEGSTKIVWDENAIARLLDRSNLQSGSTDLAEGDLENDM 1325
E+ K GG GD +K E S+ I +D+ AI RLLDR+ ++ T+L +G N+
Sbjct: 1224 EELFKDEATDGG-GD---NKEGEDSSVIHYDDKAIERLLDRNQDETEDTEL-QG--MNEY 1276
Query: 1326 LGSVKATEW---NEETTEDQ 1342
L S K ++ EE E++
Sbjct: 1277 LSSFKVAQYVVREEEMGEEE 1296
Score = 79 (32.9 bits), Expect = 3.3e-154, Sum P(5) = 3.3e-154
Identities = 17/53 (32%), Positives = 27/53 (50%)
Query: 596 EPAVTESAQVKGKAVSYEFLVKWVGKSNIHNSWIPESQLKVLAKRKLENYKAK 648
+P ++G+ +F VKW G S H SW+ E QL++ + NY+ K
Sbjct: 526 DPNTPSPKPLEGRP-ERQFFVKWQGMSYWHCSWVSELQLELHCQVMFRNYQRK 577
Score = 75 (31.5 bits), Expect = 8.8e-154, Sum P(5) = 8.8e-154
Identities = 24/64 (37%), Positives = 33/64 (51%)
Query: 678 REAFVKWTGLPYDECTWEKLDEPALEKYSHLTDLFVQFERQTLKKDASEDELPRGK--GD 735
R+ FVKW G+ Y C+W + E LE H +F ++R K D DE P G GD
Sbjct: 541 RQFFVKWQGMSYWHCSW--VSELQLEL--HCQVMFRNYQR---KNDM--DEPPSGDFGGD 591
Query: 736 CQQS 739
++S
Sbjct: 592 EEKS 595
Score = 55 (24.4 bits), Expect = 1.8e-12, Sum P(5) = 1.8e-12
Identities = 25/112 (22%), Positives = 52/112 (46%)
Query: 930 NNIGEMYNLLNFLQPASFPSLSSFEEKFNDLTTTQKVEE-LKKL-VAPHMLRRLKKDAMQ 987
N GE +++++ A L +++ D T Q + E L VA +++R + +
Sbjct: 1238 NKEGEDSSVIHYDDKAIERLLDRNQDETED-TELQGMNEYLSSFKVAQYVVREEEMGEEE 1296
Query: 988 NIPPKTERMVPVELSSIQAEYYRAMLTKNYQ-----ILRNIGKGVAQQSMLN 1034
+ ER + + S+ +Y+ +L +Y+ + RN+GKG + +N
Sbjct: 1297 EV----EREIIKQEESVDPDYWEKLLRHHYEQQQEDLARNLGKGKRIRKQVN 1344
Score = 55 (24.4 bits), Expect = 6.2e-09, Sum P(3) = 6.2e-09
Identities = 35/155 (22%), Positives = 60/155 (38%)
Query: 517 EDDKDS-DPVAVNGKVQD-ESAVSTEDLGERNDKMVVEDADVSLRDNEGLTVSEIHITCE 574
ED+K +P V KV+ E TE+ E K V ADV + E V I E
Sbjct: 1603 EDEKVLVEPPEVEEKVEKAEVKERTEEPMETEPKGV---ADVE-KVEEKSAVDLTPIVVE 1658
Query: 575 STDKDVDVGKKTSGSVAKRVQEPAVTESAQVKGKAVSYEFLVKWVGKSNIHNSWIPESQL 634
++ + +K + + + Q K + F + G + +H+ W E +
Sbjct: 1659 DKEEKKEEEEKKEVMLQNGETPKDLNDEKQKKNIKQRFMFNIADGGFTELHSLWQNEERA 1718
Query: 635 KVLAKRKLENYKAKYG----TTVINICDERWKQPQ 665
+ K+ E + ++ +IN RW+ Q
Sbjct: 1719 ATVTKKTYEIWHRRHDYWLLAGIINHGYARWQDIQ 1753
Score = 51 (23.0 bits), Expect = 3.9e-137, Sum P(4) = 3.9e-137
Identities = 29/140 (20%), Positives = 51/140 (36%)
Query: 216 GSSS-CPNDDDEKQLNASPTDSLADTKFHPAEEVLPHSQVTKSE----QNDEVPVEKHE- 269
GS S C +E+ ++A +SL HP E P ++++E + + P + +
Sbjct: 6 GSPSPCSAGSEEEDMDALLNNSLPPP--HPENEEDPEEDLSEAETPKLKKKKKPKKPRDP 63
Query: 270 ---KSSTNGSSGIKFVLAIGASERDRKRKPEVKDEDSQKKLRVDXXXXXXXXXXXXXXXI 326
KS + +G S + PE +E+ + LR D +
Sbjct: 64 KIPKSKRQKKERMLLCRQLGDSSGEG---PEFVEEEEEVALRSDSEGSDYTPGKKKKKKL 120
Query: 327 GTLSPGTSKLHEKQRTNNDE 346
G SK K+ D+
Sbjct: 121 GPKKEKKSKSKRKEEEEEDD 140
Score = 49 (22.3 bits), Expect = 3.3e-154, Sum P(5) = 3.3e-154
Identities = 11/40 (27%), Positives = 24/40 (60%)
Query: 1323 NDMLGSVKATEWNEETTEDQAESPVAAVDDASAENSERKE 1362
ND GS + +W ++ +++Q++ VA+ ++ + ER E
Sbjct: 1346 ND--GSQEDRDWQDDQSDNQSDYSVAS-EEGDEDFDERSE 1382
Score = 41 (19.5 bits), Expect = 2.3e-153, Sum P(5) = 2.3e-153
Identities = 10/34 (29%), Positives = 16/34 (47%)
Query: 1339 TEDQAESPVAAVDDA-SAENSERKEENAVTGIEE 1371
T+ +P +D E + KEE +V G +E
Sbjct: 1549 TQPNTPAPAPPAEDGIKIEENSLKEEESVEGEKE 1582
Score = 41 (19.5 bits), Expect = 4.4e-136, Sum P(4) = 4.4e-136
Identities = 15/52 (28%), Positives = 25/52 (48%)
Query: 366 KDELAEETTDPLDKSDKAGVHVNEIPLCKDIVPFELQQVDRVLGCRVKGDDT 417
+++L+E T L K K + P I + Q+ +R+L CR GD +
Sbjct: 40 EEDLSEAETPKLKKKKKP-----KKPRDPKIPKSKRQKKERMLLCRQLGDSS 86
Score = 39 (18.8 bits), Expect = 3.3e-154, Sum P(5) = 3.3e-154
Identities = 11/44 (25%), Positives = 19/44 (43%)
Query: 26 PCGPGLSNGKEENLVTSESPRNTPSAKRRLKNEINADRSSTKKK 69
P P EE+L +E+P+ K + + +S +KK
Sbjct: 30 PPHPENEEDPEEDLSEAETPKLKKKKKPKKPRDPKIPKSKRQKK 73
Score = 38 (18.4 bits), Expect = 3.1e-07, Sum P(3) = 3.1e-07
Identities = 39/195 (20%), Positives = 73/195 (37%)
Query: 111 NGKWQCPKCTQKNDQLKPISNLDSISKRARSKIITIKSQSGVKSSG--ADKVSQIFGNSI 168
NG+W P+ + + K +S S S + + +Q + A+ +I NS
Sbjct: 1513 NGRWSMPELAEVEEN-KKMSQPGSPSPKTPTPSTPGDTQPNTPAPAPPAEDGIKIEENS- 1570
Query: 169 LARKRSNKGKSVLALGVKSLEKSLDSSQVDVSCSTKPENTSAGVPVEGSSSCPNDDDEKQ 228
L + S +G+ K ++ + + V+ + P + V VE P + +EK
Sbjct: 1571 LKEEESVEGE-------KEVKSTAPEATVECTQPPAPASEDEKVLVE-----PPEVEEKV 1618
Query: 229 LNASPTDSLADTKFHPAEEVLPHSQVTKSEQNDEVPVEKHEKSSTNGSSGIKFV-LAIGA 287
A + + + V +V + D P+ +K K V L G
Sbjct: 1619 EKAEVKERTEEPMETEPKGVADVEKVEEKSAVDLTPIVVEDKEEKKEEEEKKEVMLQNGE 1678
Query: 288 SERD---RKRKPEVK 299
+ +D K+K +K
Sbjct: 1679 TPKDLNDEKQKKNIK 1693
Score = 37 (18.1 bits), Expect = 4.0e-07, Sum P(3) = 4.0e-07
Identities = 7/25 (28%), Positives = 13/25 (52%)
Query: 366 KDELAEETTDPLDKSDKAGVHVNEI 390
K E+ E T +P++ K V ++
Sbjct: 1620 KAEVKERTEEPMETEPKGVADVEKV 1644
>UNIPROTKB|J9NW81 [details] [associations]
symbol:CHD4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012957 InterPro:IPR012958 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00628 Pfam:PF08073 Pfam:PF08074
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194
SMART:SM00184 SMART:SM00249 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR023780 GeneTree:ENSGT00560000076896
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
OMA:ERMLLCR EMBL:AAEX03015287 Ensembl:ENSCAFT00000048002
Uniprot:J9NW81
Length = 1932
Score = 1242 (442.3 bits), Expect = 5.1e-154, Sum P(5) = 5.1e-154
Identities = 274/538 (50%), Positives = 353/538 (65%)
Query: 742 VALTEQPEELK--GGALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLY 799
V QPE L GG L P+Q+E LNWLR W + + ILADEMGLGKTV F+ SLY
Sbjct: 730 VKYERQPEYLDATGGTLHPYQMEGLNWLRFSWAQGTDTILADEMGLGKTVQTAVFLYSLY 789
Query: 800 CEFKAKLPCLVLVPLSTMPNWLAEFALWAPNLNVVEYHGCAKARAIIRQYEWHASD---- 855
E +K P LV PLST+ NW EF +WAP++ VV Y G +RAIIR+ E+ D
Sbjct: 790 KEGHSKGPFLVSAPLSTIINWEREFEMWAPDMYVVTYVGDKDSRAIIRENEFSFEDNAIR 849
Query: 856 ---PDNLNKKTSSYKFNVLLTTYEMILADSSHLRGVPWEVLVVDEGHRXXXXXXXXXXXX 912
+ KK +S KF+VLLT+YE+I D + L + W L+VDE HR
Sbjct: 850 GGKKASRMKKEASVKFHVLLTSYELITIDMAILGSIDWACLIVDEAHRLKNNQSKFFRVL 909
Query: 913 XXXXXQHRVLLTGTPLQNNIGEMYNLLNFLQPASFPSLSSFEEKFNDLTTTQKVEELKKL 972
QH++LLTGTPLQNN+ E+++LLNFL P F +L F E+F D+ ++++L +
Sbjct: 910 NGYSLQHKLLLTGTPLQNNLEELFHLLNFLTPERFHNLEGFLEEFADIAKEDQIKKLHDM 969
Query: 973 VAPHMLRRLKKDAMQNIPPKTERMVPVELSSIQAEYYRAMLTKNYQILRNIGKGVAQQSM 1032
+ PHMLRRLK D +N+P KTE +V VELS +Q +YY+ +LT+N++ L G G Q S+
Sbjct: 970 LGPHMLRRLKADVFKNMPSKTELIVRVELSPMQKKYYKYILTRNFEALNARGGG-NQVSL 1028
Query: 1033 LNIVMQLRKVCNHPYLIP--GTE-PDSGSVEFLHEMRIKASAKLTLLHSMLKVLYKEGHR 1089
LN+VM L+K CNHPYL P E P + + I+AS KL LL MLK L + GHR
Sbjct: 1029 LNVVMDLKKCCNHPYLFPVAAMEAPKMPNGMYDGSALIRASGKLLLLQKMLKNLKEGGHR 1088
Query: 1090 VLIFSQMTKLLDILEDYLNIEFGPKTYERVDGSVSVGDRQAAITRFNQDKSR-FVFLLST 1148
VLIFSQMTK+LD+LED+L E G K YER+DG ++ RQ AI RFN ++ F FLLST
Sbjct: 1089 VLIFSQMTKMLDLLEDFLEHE-GYK-YERIDGGITGNMRQEAIDRFNAPGAQQFCFLLST 1146
Query: 1149 RSCGLGINLATADTVIIYDSDFNPHADIQAMNRAHRIGQSKRLLVYRLVVRASVEERILQ 1208
R+ GLGINLATADTVIIYDSD+NPH DIQA +RAHRIGQ+K++++YR V RASVEERI Q
Sbjct: 1147 RAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQNKKVMIYRFVTRASVEERITQ 1206
Query: 1209 LAKKKLMLDQLFV-----NKSGS--QKEVEDILRWGTEELFNDSPGINGKDMGENNTS 1259
+AKKK+ML L V +K+GS ++E++DIL++GTEELF D G D E S
Sbjct: 1207 VAKKKMMLTHLVVRPGLGSKTGSMSKQELDDILKFGTEELFKDEATDGGGDNKEGEDS 1264
Score = 369 (135.0 bits), Expect = 7.6e-48, Sum P(6) = 7.6e-48
Identities = 133/418 (31%), Positives = 186/418 (44%)
Query: 661 WKQPQRVISLRSSKDGTREAFVKWTGLPYDECTWEKLD----EPALEKYSHLT--DLFVQ 714
W R+++ K G +KW LPYD+ +WE D + L K S+ +L
Sbjct: 641 WMMIHRILNHSVDKKGHVHYLIKWRDLPYDQASWESEDVEIQDYDLFKQSYWNHRELMRG 700
Query: 715 FERQTLKK--DASEDELPRGKGDCQQSEIVALTEQPEELK--GGALFPHQLEALNWLRKC 770
E + KK +L R V QPE L GG L P+Q+E LNWLR
Sbjct: 701 EEGRPGKKLKKVKLRKLERPPETPTVDPTVKYERQPEYLDATGGTLHPYQMEGLNWLRFS 760
Query: 771 WHKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLSTMPNWLAEFALWAPN 830
W + + ILADEMGLGKTV F+ SLY E +K P LV PLST+ NW EF +WAP+
Sbjct: 761 WAQGTDTILADEMGLGKTVQTAVFLYSLYKEGHSKGPFLVSAPLSTIINWEREFEMWAPD 820
Query: 831 LNVVEYHGCAKARAIIRQYEWHASDPDNL---NKKTSSYKFNVLLTTYEMILADSSHLRG 887
+ VV Y G +RAIIR+ E+ S DN KK S K + + +L S L
Sbjct: 821 MYVVTYVGDKDSRAIIRENEF--SFEDNAIRGGKKASRMKKEASVKFH--VLLTSYEL-- 874
Query: 888 VPWEVLVVDEGHRXXXXXXXXXXXXXXXXXQHRVLLTGTPLQNNI---GE--MYNLLNFL 942
+ ++ ++ RVL G LQ+ + G NL
Sbjct: 875 ITIDMAILGSIDWACLIVDEAHRLKNNQSKFFRVL-NGYSLQHKLLLTGTPLQNNLEELF 933
Query: 943 QPASFPSLSSFE--EKF-NDLTTTQKVEELKKLVAPHMLRRLKKDAMQNIPPKTERMVPV 999
+F + F E F + K +++KKL H + L ++ + + +P
Sbjct: 934 HLLNFLTPERFHNLEGFLEEFADIAKEDQIKKL---HDM--LGPHMLRRLKADVFKNMPS 988
Query: 1000 ELSSIQAEYYRAMLTKNYQIL--RNI----GKGVAQQ-SMLNIVMQLRKVCNHPYLIP 1050
+ I M K Y+ + RN +G Q S+LN+VM L+K CNHPYL P
Sbjct: 989 KTELIVRVELSPMQKKYYKYILTRNFEALNARGGGNQVSLLNVVMDLKKCCNHPYLFP 1046
Score = 191 (72.3 bits), Expect = 5.1e-154, Sum P(5) = 5.1e-154
Identities = 29/50 (58%), Positives = 38/50 (76%)
Query: 72 DGYYYE-CVICDLGGNLLCCDSCPRTYHLQCLDPPLKRIPNGKWQCPKCT 120
D ++ E C +C GG LLCCD+CP +YH+ CL+PPL IPNG+W CP+CT
Sbjct: 465 DDHHMEFCRVCKDGGELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCT 514
Score = 178 (67.7 bits), Expect = 2.5e-150, Sum P(4) = 2.5e-150
Identities = 29/90 (32%), Positives = 49/90 (54%)
Query: 40 VTSESPRNTPSAKRRLKNEINADRSSTKKKGNDGYYYE----CVICDLGGNLLCCDSCPR 95
V+ S + ++++L+ + + DGY + C +C GG ++ CD+CPR
Sbjct: 351 VSDGSTSRSSRSRKKLRTTKKKKKGEEEVTAVDGYETDHQDYCEVCQQGGEIILCDTCPR 410
Query: 96 TYHLQCLDPPLKRIPNGKWQCPKCTQKNDQ 125
YH+ CLDP +++ P GKW CP C ++ Q
Sbjct: 411 AYHMVCLDPDMEKAPEGKWSCPHCEKEGIQ 440
Score = 81 (33.6 bits), Expect = 7.6e-48, Sum P(6) = 7.6e-48
Identities = 36/140 (25%), Positives = 70/140 (50%)
Query: 1212 KKLMLDQLFVNKSGSQKEVEDILRWGTEELFND---SPGINGKDMGENNTSIEEAVR-DL 1267
KK+M+ + FV ++ ++ + + + + + PG+ K + +++ ++
Sbjct: 1187 KKVMIYR-FVTRASVEERITQVAK--KKMMLTHLVVRPGLGSKTGSMSKQELDDILKFGT 1243
Query: 1268 EQ--KHRKRGGGLGDVYQDKCTEGSTKIVWDENAIARLLDRSNLQSGSTDLAEGDLENDM 1325
E+ K GG GD +K E S+ I +D+ AI RLLDR+ ++ T+L +G N+
Sbjct: 1244 EELFKDEATDGG-GD---NKEGEDSSVIHYDDKAIERLLDRNQDETEDTEL-QG--MNEY 1296
Query: 1326 LGSVKATEW---NEETTEDQ 1342
L S K ++ EE E++
Sbjct: 1297 LSSFKVAQYVVREEEMGEEE 1316
Score = 79 (32.9 bits), Expect = 5.1e-154, Sum P(5) = 5.1e-154
Identities = 17/53 (32%), Positives = 27/53 (50%)
Query: 596 EPAVTESAQVKGKAVSYEFLVKWVGKSNIHNSWIPESQLKVLAKRKLENYKAK 648
+P ++G+ +F VKW G S H SW+ E QL++ + NY+ K
Sbjct: 546 DPNTPSPKPLEGRP-ERQFFVKWQGMSYWHCSWVSELQLELHCQVMFRNYQRK 597
Score = 75 (31.5 bits), Expect = 1.3e-153, Sum P(5) = 1.3e-153
Identities = 24/64 (37%), Positives = 33/64 (51%)
Query: 678 REAFVKWTGLPYDECTWEKLDEPALEKYSHLTDLFVQFERQTLKKDASEDELPRGK--GD 735
R+ FVKW G+ Y C+W + E LE H +F ++R K D DE P G GD
Sbjct: 561 RQFFVKWQGMSYWHCSW--VSELQLEL--HCQVMFRNYQR---KNDM--DEPPSGDFGGD 611
Query: 736 CQQS 739
++S
Sbjct: 612 EEKS 615
Score = 55 (24.4 bits), Expect = 1.9e-12, Sum P(5) = 1.9e-12
Identities = 25/112 (22%), Positives = 52/112 (46%)
Query: 930 NNIGEMYNLLNFLQPASFPSLSSFEEKFNDLTTTQKVEE-LKKL-VAPHMLRRLKKDAMQ 987
N GE +++++ A L +++ D T Q + E L VA +++R + +
Sbjct: 1258 NKEGEDSSVIHYDDKAIERLLDRNQDETED-TELQGMNEYLSSFKVAQYVVREEEMGEEE 1316
Query: 988 NIPPKTERMVPVELSSIQAEYYRAMLTKNYQ-----ILRNIGKGVAQQSMLN 1034
+ ER + + S+ +Y+ +L +Y+ + RN+GKG + +N
Sbjct: 1317 EV----EREIIKQEESVDPDYWEKLLRHHYEQQQEDLARNLGKGKRIRKQVN 1364
Score = 55 (24.4 bits), Expect = 6.4e-09, Sum P(3) = 6.4e-09
Identities = 35/155 (22%), Positives = 60/155 (38%)
Query: 517 EDDKDS-DPVAVNGKVQD-ESAVSTEDLGERNDKMVVEDADVSLRDNEGLTVSEIHITCE 574
ED+K +P V KV+ E TE+ E K V ADV + E V I E
Sbjct: 1623 EDEKVLVEPPEVEEKVEKAEVKERTEEPMETEPKGV---ADVE-KVEEKSAVDLTPIVVE 1678
Query: 575 STDKDVDVGKKTSGSVAKRVQEPAVTESAQVKGKAVSYEFLVKWVGKSNIHNSWIPESQL 634
++ + +K + + + Q K + F + G + +H+ W E +
Sbjct: 1679 DKEEKKEEEEKKEVMLQNGETPKDLNDEKQKKNIKQRFMFNIADGGFTELHSLWQNEERA 1738
Query: 635 KVLAKRKLENYKAKYG----TTVINICDERWKQPQ 665
+ K+ E + ++ +IN RW+ Q
Sbjct: 1739 ATVTKKTYEIWHRRHDYWLLAGIINHGYARWQDIQ 1773
Score = 51 (23.0 bits), Expect = 5.5e-137, Sum P(4) = 5.5e-137
Identities = 29/140 (20%), Positives = 51/140 (36%)
Query: 216 GSSS-CPNDDDEKQLNASPTDSLADTKFHPAEEVLPHSQVTKSE----QNDEVPVEKHE- 269
GS S C +E+ ++A +SL HP E P ++++E + + P + +
Sbjct: 26 GSPSPCSAGSEEEDMDALLNNSLPPP--HPENEEDPEEDLSEAETPKLKKKKKPKKPRDP 83
Query: 270 ---KSSTNGSSGIKFVLAIGASERDRKRKPEVKDEDSQKKLRVDXXXXXXXXXXXXXXXI 326
KS + +G S + PE +E+ + LR D +
Sbjct: 84 KIPKSKRQKKERMLLCRQLGDSSGEG---PEFVEEEEEVALRSDSEGSDYTPGKKKKKKL 140
Query: 327 GTLSPGTSKLHEKQRTNNDE 346
G SK K+ D+
Sbjct: 141 GPKKEKKSKSKRKEEEEEDD 160
Score = 49 (22.3 bits), Expect = 5.1e-154, Sum P(5) = 5.1e-154
Identities = 11/40 (27%), Positives = 24/40 (60%)
Query: 1323 NDMLGSVKATEWNEETTEDQAESPVAAVDDASAENSERKE 1362
ND GS + +W ++ +++Q++ VA+ ++ + ER E
Sbjct: 1366 ND--GSQEDRDWQDDQSDNQSDYSVAS-EEGDEDFDERSE 1402
Score = 44 (20.5 bits), Expect = 3.0e-136, Sum P(4) = 3.0e-136
Identities = 39/158 (24%), Positives = 58/158 (36%)
Query: 164 FGNSILARKRSNKGK-SVLALGVKSLEKSLDSSQVDVSCSTKPENTSAGVPVEGSSSCPN 222
+ NS+ RK G S S E+ +D+ + PEN P E S
Sbjct: 11 WANSLAGRKGMASGLGSPSPCSAGSEEEDMDALLNNSLPPPHPENEED--PEEDLSEAET 68
Query: 223 DD-DEKQLNASPTD-SLADTKFHPAEEVLPHSQVTKSEQNDEVPVEKHE----KSSTNGS 276
+K+ P D + +K E +L Q+ S VE+ E +S + GS
Sbjct: 69 PKLKKKKKPKKPRDPKIPKSKRQKKERMLLCRQLGDSSGEGPEFVEEEEEVALRSDSEGS 128
Query: 277 S---GIKFVLAIGA-----SERDRKRKPEVKDEDSQKK 306
G K +G S+ RK + E D+D K
Sbjct: 129 DYTPGKKKKKKLGPKKEKKSKSKRKEEEEEDDDDDDSK 166
Score = 41 (19.5 bits), Expect = 3.5e-153, Sum P(5) = 3.5e-153
Identities = 10/34 (29%), Positives = 16/34 (47%)
Query: 1339 TEDQAESPVAAVDDA-SAENSERKEENAVTGIEE 1371
T+ +P +D E + KEE +V G +E
Sbjct: 1569 TQPNTPAPAPPAEDGIKIEENSLKEEESVEGEKE 1602
Score = 41 (19.5 bits), Expect = 6.2e-136, Sum P(4) = 6.2e-136
Identities = 15/52 (28%), Positives = 25/52 (48%)
Query: 366 KDELAEETTDPLDKSDKAGVHVNEIPLCKDIVPFELQQVDRVLGCRVKGDDT 417
+++L+E T L K K + P I + Q+ +R+L CR GD +
Sbjct: 60 EEDLSEAETPKLKKKKKP-----KKPRDPKIPKSKRQKKERMLLCRQLGDSS 106
Score = 39 (18.8 bits), Expect = 5.1e-154, Sum P(5) = 5.1e-154
Identities = 11/44 (25%), Positives = 19/44 (43%)
Query: 26 PCGPGLSNGKEENLVTSESPRNTPSAKRRLKNEINADRSSTKKK 69
P P EE+L +E+P+ K + + +S +KK
Sbjct: 50 PPHPENEEDPEEDLSEAETPKLKKKKKPKKPRDPKIPKSKRQKK 93
Score = 38 (18.4 bits), Expect = 3.2e-07, Sum P(3) = 3.2e-07
Identities = 39/195 (20%), Positives = 73/195 (37%)
Query: 111 NGKWQCPKCTQKNDQLKPISNLDSISKRARSKIITIKSQSGVKSSG--ADKVSQIFGNSI 168
NG+W P+ + + K +S S S + + +Q + A+ +I NS
Sbjct: 1533 NGRWSMPELAEVEEN-KKMSQPGSPSPKTPTPSTPGDTQPNTPAPAPPAEDGIKIEENS- 1590
Query: 169 LARKRSNKGKSVLALGVKSLEKSLDSSQVDVSCSTKPENTSAGVPVEGSSSCPNDDDEKQ 228
L + S +G+ K ++ + + V+ + P + V VE P + +EK
Sbjct: 1591 LKEEESVEGE-------KEVKSTAPEATVECTQPPAPASEDEKVLVE-----PPEVEEKV 1638
Query: 229 LNASPTDSLADTKFHPAEEVLPHSQVTKSEQNDEVPVEKHEKSSTNGSSGIKFV-LAIGA 287
A + + + V +V + D P+ +K K V L G
Sbjct: 1639 EKAEVKERTEEPMETEPKGVADVEKVEEKSAVDLTPIVVEDKEEKKEEEEKKEVMLQNGE 1698
Query: 288 SERD---RKRKPEVK 299
+ +D K+K +K
Sbjct: 1699 TPKDLNDEKQKKNIK 1713
Score = 37 (18.1 bits), Expect = 4.1e-07, Sum P(3) = 4.1e-07
Identities = 7/25 (28%), Positives = 13/25 (52%)
Query: 366 KDELAEETTDPLDKSDKAGVHVNEI 390
K E+ E T +P++ K V ++
Sbjct: 1640 KAEVKERTEEPMETEPKGVADVEKV 1664
>UNIPROTKB|F1LM59 [details] [associations]
symbol:Chd4 "Protein Chd4" species:10116 "Rattus
norvegicus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012957 InterPro:IPR012958 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00628 Pfam:PF08073 Pfam:PF08074
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194
SMART:SM00184 SMART:SM00249 SMART:SM00298 SMART:SM00490
Pfam:PF00385 RGD:620064 GO:GO:0005524 GO:GO:0005737 GO:GO:0005813
GO:GO:0006355 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 InterPro:IPR019786 PROSITE:PS01359
InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 GO:GO:0016581 InterPro:IPR023780
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
IPI:IPI00365698 PRIDE:F1LM59 Ensembl:ENSRNOT00000024864
ArrayExpress:F1LM59 Uniprot:F1LM59
Length = 1945
Score = 1242 (442.3 bits), Expect = 5.1e-154, Sum P(5) = 5.1e-154
Identities = 274/538 (50%), Positives = 353/538 (65%)
Query: 742 VALTEQPEELK--GGALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLY 799
V QPE L GG L P+Q+E LNWLR W + + ILADEMGLGKTV F+ SLY
Sbjct: 731 VKYERQPEYLDATGGTLHPYQMEGLNWLRFSWAQGTDTILADEMGLGKTVQTAVFLYSLY 790
Query: 800 CEFKAKLPCLVLVPLSTMPNWLAEFALWAPNLNVVEYHGCAKARAIIRQYEWHASD---- 855
E +K P LV PLST+ NW EF +WAP++ VV Y G +RAIIR+ E+ D
Sbjct: 791 KEGHSKGPFLVSAPLSTIINWEREFEMWAPDMYVVTYVGDKDSRAIIRENEFSFEDNAIR 850
Query: 856 ---PDNLNKKTSSYKFNVLLTTYEMILADSSHLRGVPWEVLVVDEGHRXXXXXXXXXXXX 912
+ KK +S KF+VLLT+YE+I D + L + W L+VDE HR
Sbjct: 851 GGKKASRMKKEASVKFHVLLTSYELITIDMAILGSIDWACLIVDEAHRLKNNQSKFFRVL 910
Query: 913 XXXXXQHRVLLTGTPLQNNIGEMYNLLNFLQPASFPSLSSFEEKFNDLTTTQKVEELKKL 972
QH++LLTGTPLQNN+ E+++LLNFL P F +L F E+F D+ ++++L +
Sbjct: 911 NGYSLQHKLLLTGTPLQNNLEELFHLLNFLTPERFHNLEGFLEEFADIAKEDQIKKLHDM 970
Query: 973 VAPHMLRRLKKDAMQNIPPKTERMVPVELSSIQAEYYRAMLTKNYQILRNIGKGVAQQSM 1032
+ PHMLRRLK D +N+P KTE +V VELS +Q +YY+ +LT+N++ L G G Q S+
Sbjct: 971 LGPHMLRRLKADVFKNMPSKTELIVRVELSPMQKKYYKYILTRNFEALNARGGG-NQVSL 1029
Query: 1033 LNIVMQLRKVCNHPYLIP--GTE-PDSGSVEFLHEMRIKASAKLTLLHSMLKVLYKEGHR 1089
LN+VM L+K CNHPYL P E P + + I+AS KL LL MLK L + GHR
Sbjct: 1030 LNVVMDLKKCCNHPYLFPVAAMEAPKMPNGMYDGSALIRASGKLLLLQKMLKNLKEGGHR 1089
Query: 1090 VLIFSQMTKLLDILEDYLNIEFGPKTYERVDGSVSVGDRQAAITRFNQDKSR-FVFLLST 1148
VLIFSQMTK+LD+LED+L E G K YER+DG ++ RQ AI RFN ++ F FLLST
Sbjct: 1090 VLIFSQMTKMLDLLEDFLEHE-GYK-YERIDGGITGNMRQEAIDRFNAPGAQQFCFLLST 1147
Query: 1149 RSCGLGINLATADTVIIYDSDFNPHADIQAMNRAHRIGQSKRLLVYRLVVRASVEERILQ 1208
R+ GLGINLATADTVIIYDSD+NPH DIQA +RAHRIGQ+K++++YR V RASVEERI Q
Sbjct: 1148 RAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQNKKVMIYRFVTRASVEERITQ 1207
Query: 1209 LAKKKLMLDQLFV-----NKSGS--QKEVEDILRWGTEELFNDSPGINGKDMGENNTS 1259
+AKKK+ML L V +K+GS ++E++DIL++GTEELF D G D E S
Sbjct: 1208 VAKKKMMLTHLVVRPGLGSKTGSMSKQELDDILKFGTEELFKDEATDGGGDNKEGEDS 1265
Score = 369 (135.0 bits), Expect = 2.6e-48, Sum P(5) = 2.6e-48
Identities = 133/418 (31%), Positives = 186/418 (44%)
Query: 661 WKQPQRVISLRSSKDGTREAFVKWTGLPYDECTWEKLD----EPALEKYSHLT--DLFVQ 714
W R+++ K G +KW LPYD+ +WE D + L K S+ +L
Sbjct: 642 WMMIHRILNHSVDKKGHVHYLIKWRDLPYDQASWESEDVEIQDYDLFKQSYWNHRELMRG 701
Query: 715 FERQTLKK--DASEDELPRGKGDCQQSEIVALTEQPEELK--GGALFPHQLEALNWLRKC 770
E + KK +L R V QPE L GG L P+Q+E LNWLR
Sbjct: 702 EEGRPGKKLKKVKLRKLERPPETPTVDPTVKYERQPEYLDATGGTLHPYQMEGLNWLRFS 761
Query: 771 WHKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLSTMPNWLAEFALWAPN 830
W + + ILADEMGLGKTV F+ SLY E +K P LV PLST+ NW EF +WAP+
Sbjct: 762 WAQGTDTILADEMGLGKTVQTAVFLYSLYKEGHSKGPFLVSAPLSTIINWEREFEMWAPD 821
Query: 831 LNVVEYHGCAKARAIIRQYEWHASDPDNL---NKKTSSYKFNVLLTTYEMILADSSHLRG 887
+ VV Y G +RAIIR+ E+ S DN KK S K + + +L S L
Sbjct: 822 MYVVTYVGDKDSRAIIRENEF--SFEDNAIRGGKKASRMKKEASVKFH--VLLTSYEL-- 875
Query: 888 VPWEVLVVDEGHRXXXXXXXXXXXXXXXXXQHRVLLTGTPLQNNI---GE--MYNLLNFL 942
+ ++ ++ RVL G LQ+ + G NL
Sbjct: 876 ITIDMAILGSIDWACLIVDEAHRLKNNQSKFFRVL-NGYSLQHKLLLTGTPLQNNLEELF 934
Query: 943 QPASFPSLSSFE--EKF-NDLTTTQKVEELKKLVAPHMLRRLKKDAMQNIPPKTERMVPV 999
+F + F E F + K +++KKL H + L ++ + + +P
Sbjct: 935 HLLNFLTPERFHNLEGFLEEFADIAKEDQIKKL---HDM--LGPHMLRRLKADVFKNMPS 989
Query: 1000 ELSSIQAEYYRAMLTKNYQIL--RNI----GKGVAQQ-SMLNIVMQLRKVCNHPYLIP 1050
+ I M K Y+ + RN +G Q S+LN+VM L+K CNHPYL P
Sbjct: 990 KTELIVRVELSPMQKKYYKYILTRNFEALNARGGGNQVSLLNVVMDLKKCCNHPYLFP 1047
Score = 191 (72.3 bits), Expect = 5.1e-154, Sum P(5) = 5.1e-154
Identities = 29/50 (58%), Positives = 38/50 (76%)
Query: 72 DGYYYE-CVICDLGGNLLCCDSCPRTYHLQCLDPPLKRIPNGKWQCPKCT 120
D ++ E C +C GG LLCCD+CP +YH+ CL+PPL IPNG+W CP+CT
Sbjct: 466 DDHHMEFCRVCKDGGELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCT 515
Score = 179 (68.1 bits), Expect = 2.4e-150, Sum P(4) = 2.4e-150
Identities = 30/85 (35%), Positives = 47/85 (55%)
Query: 41 TSESPRNTPSAKRRLKNEINADRSSTKKKGNDGYYYECVICDLGGNLLCCDSCPRTYHLQ 100
+S S + +AK++ K E + + Y C +C GG ++ CD+CPR YH+
Sbjct: 360 SSRSRKKLRTAKKKKKGEEEVTAVDGYETDHQDY---CEVCQQGGEIILCDTCPRAYHMV 416
Query: 101 CLDPPLKRIPNGKWQCPKCTQKNDQ 125
CLDP +++ P GKW CP C ++ Q
Sbjct: 417 CLDPDMEKAPEGKWSCPHCEKEGIQ 441
Score = 81 (33.6 bits), Expect = 2.6e-48, Sum P(5) = 2.6e-48
Identities = 36/140 (25%), Positives = 70/140 (50%)
Query: 1212 KKLMLDQLFVNKSGSQKEVEDILRWGTEELFND---SPGINGKDMGENNTSIEEAVR-DL 1267
KK+M+ + FV ++ ++ + + + + + PG+ K + +++ ++
Sbjct: 1188 KKVMIYR-FVTRASVEERITQVAK--KKMMLTHLVVRPGLGSKTGSMSKQELDDILKFGT 1244
Query: 1268 EQ--KHRKRGGGLGDVYQDKCTEGSTKIVWDENAIARLLDRSNLQSGSTDLAEGDLENDM 1325
E+ K GG GD +K E S+ I +D+ AI RLLDR+ ++ T+L +G N+
Sbjct: 1245 EELFKDEATDGG-GD---NKEGEDSSVIHYDDKAIERLLDRNQDETEDTEL-QG--MNEY 1297
Query: 1326 LGSVKATEW---NEETTEDQ 1342
L S K ++ EE E++
Sbjct: 1298 LSSFKVAQYVVREEEMGEEE 1317
Score = 79 (32.9 bits), Expect = 5.1e-154, Sum P(5) = 5.1e-154
Identities = 17/53 (32%), Positives = 27/53 (50%)
Query: 596 EPAVTESAQVKGKAVSYEFLVKWVGKSNIHNSWIPESQLKVLAKRKLENYKAK 648
+P ++G+ +F VKW G S H SW+ E QL++ + NY+ K
Sbjct: 547 DPNTPSPKPLEGRP-ERQFFVKWQGMSYWHCSWVSELQLELHCQVMFRNYQRK 598
Score = 75 (31.5 bits), Expect = 1.3e-153, Sum P(5) = 1.3e-153
Identities = 24/64 (37%), Positives = 33/64 (51%)
Query: 678 REAFVKWTGLPYDECTWEKLDEPALEKYSHLTDLFVQFERQTLKKDASEDELPRGK--GD 735
R+ FVKW G+ Y C+W + E LE H +F ++R K D DE P G GD
Sbjct: 562 RQFFVKWQGMSYWHCSW--VSELQLEL--HCQVMFRNYQR---KNDM--DEPPSGDFGGD 612
Query: 736 CQQS 739
++S
Sbjct: 613 EEKS 616
Score = 60 (26.2 bits), Expect = 1.6e-09, Sum P(3) = 1.6e-09
Identities = 43/194 (22%), Positives = 77/194 (39%)
Query: 111 NGKWQCPKCTQKNDQLKPISNLDSISKRARSKIITIKSQSGVKSS--GADKVSQIFGNSI 168
NG+W P+ + + K +S S S + + +Q + A+ +I NS
Sbjct: 1534 NGRWSMPELAEVEEN-KKMSQPGSPSPKTPTPSTPGDTQPNTPAPVPPAEDGIKIEENS- 1591
Query: 169 LARKRSNKGKSVLALGVKSLEKSLDSSQVDVSCSTKPENTSAGV----PVEGSSSCPNDD 224
L + S +G+ K ++ + + +V V C+ P A P G + P DD
Sbjct: 1592 LKEEESTEGE-------KEVKPT--APEVTVECAQPPAPAPAPASGPGPTPGPAPAPEDD 1642
Query: 225 DEKQLNASPTDSLADTKFHPAEEVLPHSQVTKSEQNDEVPVEKHEKSSTNGSSGIKFVLA 284
+ A P + + K AE + ++E VEK E+ S + I V+
Sbjct: 1643 ---KAPAEPPEG--EEKVEKAEVKERAEEPMETESKGTTEVEKAEEKSAVDLTPI--VVE 1695
Query: 285 IGASERDRKRKPEV 298
+++ + K EV
Sbjct: 1696 DKEEKKEEEEKKEV 1709
Score = 55 (24.4 bits), Expect = 1.6e-12, Sum P(5) = 1.6e-12
Identities = 25/112 (22%), Positives = 52/112 (46%)
Query: 930 NNIGEMYNLLNFLQPASFPSLSSFEEKFNDLTTTQKVEE-LKKL-VAPHMLRRLKKDAMQ 987
N GE +++++ A L +++ D T Q + E L VA +++R + +
Sbjct: 1259 NKEGEDSSVIHYDDKAIERLLDRNQDETED-TELQGMNEYLSSFKVAQYVVREEEMGEEE 1317
Query: 988 NIPPKTERMVPVELSSIQAEYYRAMLTKNYQ-----ILRNIGKGVAQQSMLN 1034
+ ER + + S+ +Y+ +L +Y+ + RN+GKG + +N
Sbjct: 1318 EV----EREIIKQEESVDPDYWEKLLRHHYEQQQEDLARNLGKGKRIRKQVN 1365
Score = 52 (23.4 bits), Expect = 3.9e-139, Sum P(5) = 3.9e-139
Identities = 28/137 (20%), Positives = 49/137 (35%)
Query: 216 GSSS-CPNDDDEKQLNASPTDSLADTKFHPAEEVLPHSQVTKSE----QNDEVPVEKHEK 270
GS S C +E+ ++A +SL HP E P ++++E + + P + +
Sbjct: 27 GSPSPCSAGSEEEDMDALLNNSLPPP--HPENEDDPEEDLSEAETPKLKKKKKPKKPRDP 84
Query: 271 SSTNGSSGIKFVLAIGASERDRKRK-PEVKDEDSQKKLRVDXXXXXXXXXXXXXXXIGTL 329
K L + D + PE +ED + LR D +G
Sbjct: 85 KIPKSKRQKKERLLLCRQLGDSSGEGPEFVEEDEEAALRSDSEGSDYTPGKKKKKKLGPK 144
Query: 330 SPGTSKLHEKQRTNNDE 346
SK K+ ++
Sbjct: 145 KEKKSKSKRKEEEEEED 161
Score = 49 (22.3 bits), Expect = 5.1e-154, Sum P(5) = 5.1e-154
Identities = 11/40 (27%), Positives = 24/40 (60%)
Query: 1323 NDMLGSVKATEWNEETTEDQAESPVAAVDDASAENSERKE 1362
ND GS + +W ++ +++Q++ VA+ ++ + ER E
Sbjct: 1367 ND--GSQEDRDWQDDQSDNQSDYSVAS-EEGDEDFDERSE 1403
Score = 47 (21.6 bits), Expect = 3.3e-08, Sum P(3) = 3.3e-08
Identities = 30/156 (19%), Positives = 62/156 (39%)
Query: 517 EDDK-DSDPVAVNGKVQD-ESAVSTEDLGERNDKMVVEDADVSLRDNEGLTVSEIHITCE 574
EDDK ++P KV+ E E+ E K E + + ++ I + +
Sbjct: 1640 EDDKAPAEPPEGEEKVEKAEVKERAEEPMETESKGTTEVEKAE--EKSAVDLTPIVVEDK 1697
Query: 575 STDKDVDVGKKTSGSVAKRVQEPA-VTESAQVKGKAVSYEFLVKWVGKSNIHNSWIPESQ 633
K+ + K+ + + + P +++ Q K + F + G + +H+ W E +
Sbjct: 1698 EEKKEEEEKKEV---LLQNGETPKDLSDEKQKKNLKQRFMFNIADGGFTELHSLWQNEER 1754
Query: 634 LKVLAKRKLENYKAKYG----TTVINICDERWKQPQ 665
+ K+ E + ++ +IN RW+ Q
Sbjct: 1755 AATVTKKTYEIWHRRHDYWLLAGIINHGYARWQDIQ 1790
Score = 41 (19.5 bits), Expect = 7.6e-136, Sum P(4) = 7.6e-136
Identities = 15/52 (28%), Positives = 25/52 (48%)
Query: 366 KDELAEETTDPLDKSDKAGVHVNEIPLCKDIVPFELQQVDRVLGCRVKGDDT 417
+++L+E T L K K + P I + Q+ +R+L CR GD +
Sbjct: 61 EEDLSEAETPKLKKKKKP-----KKPRDPKIPKSKRQKKERLLLCRQLGDSS 107
Score = 41 (19.5 bits), Expect = 1.3e-07, Sum P(3) = 1.3e-07
Identities = 16/79 (20%), Positives = 31/79 (39%)
Query: 507 KGENAIDLLREDDKDSDPVAVNGKVQDESAVSTEDLGERNDKMVVEDADVSLRDNEGLTV 566
+GE ++ ++ +P+ K E + E +VVED + + E
Sbjct: 1650 EGEEKVEKAEVKERAEEPMETESKGTTEVEKAEEKSAVDLTPIVVEDKEEKKEEEEK--- 1706
Query: 567 SEIHITCESTDKDVDVGKK 585
E+ + T KD+ K+
Sbjct: 1707 KEVLLQNGETPKDLSDEKQ 1725
Score = 40 (19.1 bits), Expect = 5.1e-154, Sum P(5) = 5.1e-154
Identities = 11/44 (25%), Positives = 20/44 (45%)
Query: 26 PCGPGLSNGKEENLVTSESPRNTPSAKRRLKNEINADRSSTKKK 69
P P + EE+L +E+P+ K + + +S +KK
Sbjct: 51 PPHPENEDDPEEDLSEAETPKLKKKKKPKKPRDPKIPKSKRQKK 94
Score = 39 (18.8 bits), Expect = 1.5e-10, Sum P(4) = 1.5e-10
Identities = 8/28 (28%), Positives = 15/28 (53%)
Query: 723 DASEDELPRGKGDCQQSEIVALTEQPEE 750
D + E P G+ +++E+ E+P E
Sbjct: 1642 DKAPAEPPEGEEKVEKAEVKERAEEPME 1669
Score = 37 (18.1 bits), Expect = 3.9e-139, Sum P(5) = 3.9e-139
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 363 AQRKDELAEETTDPLDKSDKAGVHVNE 389
++RK+E EE D K K+ + E
Sbjct: 151 SKRKEEEEEEDDDDDSKEPKSSAQLLE 177
Score = 37 (18.1 bits), Expect = 2.0e-135, Sum P(4) = 2.0e-135
Identities = 30/116 (25%), Positives = 44/116 (37%)
Query: 205 PENTSAGVPVEGSSSCPNDD-DEKQLNASPTD-SLADTKFHPAEEVLPHSQVTKSEQNDE 262
PEN P E S +K+ P D + +K E +L Q+ S
Sbjct: 54 PENEDD--PEEDLSEAETPKLKKKKKPKKPRDPKIPKSKRQKKERLLLCRQLGDSSGEGP 111
Query: 263 VPVEKHE----KSSTNGSS---GIKFVLAIGA-----SERDRKRKPEVKDEDSQKK 306
VE+ E +S + GS G K +G S+ RK + E +D+D K
Sbjct: 112 EFVEEDEEAALRSDSEGSDYTPGKKKKKKLGPKKEKKSKSKRKEEEEEEDDDDDSK 167
>UNIPROTKB|F1N3F6 [details] [associations]
symbol:CHD4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0016581 "NuRD complex" evidence=IEA] [GO:0008134
"transcription factor binding" evidence=IEA] [GO:0005813
"centrosome" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR002464 InterPro:IPR012957 InterPro:IPR012958
InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271 Pfam:PF00628
Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005737 GO:GO:0005813 GO:GO:0006355 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 InterPro:IPR019786
PROSITE:PS01359 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GO:GO:0016581 InterPro:IPR023780 GeneTree:ENSGT00560000076896
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
OMA:ERMLLCR EMBL:DAAA02014463 IPI:IPI00877578
Ensembl:ENSBTAT00000019612 ArrayExpress:F1N3F6 Uniprot:F1N3F6
Length = 1934
Score = 1242 (442.3 bits), Expect = 5.3e-154, Sum P(5) = 5.3e-154
Identities = 274/538 (50%), Positives = 353/538 (65%)
Query: 742 VALTEQPEELK--GGALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLY 799
V QPE L GG L P+Q+E LNWLR W + + ILADEMGLGKTV F+ SLY
Sbjct: 732 VKYERQPEYLDATGGTLHPYQMEGLNWLRFSWAQGTDTILADEMGLGKTVQTAVFLYSLY 791
Query: 800 CEFKAKLPCLVLVPLSTMPNWLAEFALWAPNLNVVEYHGCAKARAIIRQYEWHASD---- 855
E +K P LV PLST+ NW EF +WAP++ VV Y G +RAIIR+ E+ D
Sbjct: 792 KEGHSKGPFLVSAPLSTIINWEREFEMWAPDMYVVTYVGDKDSRAIIRENEFSFEDNAIR 851
Query: 856 ---PDNLNKKTSSYKFNVLLTTYEMILADSSHLRGVPWEVLVVDEGHRXXXXXXXXXXXX 912
+ KK +S KF+VLLT+YE+I D + L + W L+VDE HR
Sbjct: 852 GGKKASRMKKEASVKFHVLLTSYELITIDMAILGSIDWACLIVDEAHRLKNNQSKFFRVL 911
Query: 913 XXXXXQHRVLLTGTPLQNNIGEMYNLLNFLQPASFPSLSSFEEKFNDLTTTQKVEELKKL 972
QH++LLTGTPLQNN+ E+++LLNFL P F +L F E+F D+ ++++L +
Sbjct: 912 NGYSLQHKLLLTGTPLQNNLEELFHLLNFLTPERFHNLEGFLEEFADIAKEDQIKKLHDM 971
Query: 973 VAPHMLRRLKKDAMQNIPPKTERMVPVELSSIQAEYYRAMLTKNYQILRNIGKGVAQQSM 1032
+ PHMLRRLK D +N+P KTE +V VELS +Q +YY+ +LT+N++ L G G Q S+
Sbjct: 972 LGPHMLRRLKADVFKNMPSKTELIVRVELSPMQKKYYKYILTRNFEALNARGGG-NQVSL 1030
Query: 1033 LNIVMQLRKVCNHPYLIP--GTE-PDSGSVEFLHEMRIKASAKLTLLHSMLKVLYKEGHR 1089
LN+VM L+K CNHPYL P E P + + I+AS KL LL MLK L + GHR
Sbjct: 1031 LNVVMDLKKCCNHPYLFPVAAMEAPKMPNGMYDGSALIRASGKLLLLQKMLKNLKEGGHR 1090
Query: 1090 VLIFSQMTKLLDILEDYLNIEFGPKTYERVDGSVSVGDRQAAITRFNQDKSR-FVFLLST 1148
VLIFSQMTK+LD+LED+L E G K YER+DG ++ RQ AI RFN ++ F FLLST
Sbjct: 1091 VLIFSQMTKMLDLLEDFLEHE-GYK-YERIDGGITGNMRQEAIDRFNAPGAQQFCFLLST 1148
Query: 1149 RSCGLGINLATADTVIIYDSDFNPHADIQAMNRAHRIGQSKRLLVYRLVVRASVEERILQ 1208
R+ GLGINLATADTVIIYDSD+NPH DIQA +RAHRIGQ+K++++YR V RASVEERI Q
Sbjct: 1149 RAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQNKKVMIYRFVTRASVEERITQ 1208
Query: 1209 LAKKKLMLDQLFV-----NKSGS--QKEVEDILRWGTEELFNDSPGINGKDMGENNTS 1259
+AKKK+ML L V +K+GS ++E++DIL++GTEELF D G D E S
Sbjct: 1209 VAKKKMMLTHLVVRPGLGSKTGSMSKQELDDILKFGTEELFKDEATDGGGDNKEGEDS 1266
Score = 369 (135.0 bits), Expect = 3.2e-48, Sum P(5) = 3.2e-48
Identities = 133/418 (31%), Positives = 186/418 (44%)
Query: 661 WKQPQRVISLRSSKDGTREAFVKWTGLPYDECTWEKLD----EPALEKYSHLT--DLFVQ 714
W R+++ K G +KW LPYD+ +WE D + L K S+ +L
Sbjct: 643 WMMIHRILNHSVDKKGHVHYLIKWRDLPYDQASWESEDVEIQDYDLFKQSYWNHRELMRG 702
Query: 715 FERQTLKK--DASEDELPRGKGDCQQSEIVALTEQPEELK--GGALFPHQLEALNWLRKC 770
E + KK +L R V QPE L GG L P+Q+E LNWLR
Sbjct: 703 EEGRPGKKLKKVKLRKLERPPETPTVDPTVKYERQPEYLDATGGTLHPYQMEGLNWLRFS 762
Query: 771 WHKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLSTMPNWLAEFALWAPN 830
W + + ILADEMGLGKTV F+ SLY E +K P LV PLST+ NW EF +WAP+
Sbjct: 763 WAQGTDTILADEMGLGKTVQTAVFLYSLYKEGHSKGPFLVSAPLSTIINWEREFEMWAPD 822
Query: 831 LNVVEYHGCAKARAIIRQYEWHASDPDNL---NKKTSSYKFNVLLTTYEMILADSSHLRG 887
+ VV Y G +RAIIR+ E+ S DN KK S K + + +L S L
Sbjct: 823 MYVVTYVGDKDSRAIIRENEF--SFEDNAIRGGKKASRMKKEASVKFH--VLLTSYEL-- 876
Query: 888 VPWEVLVVDEGHRXXXXXXXXXXXXXXXXXQHRVLLTGTPLQNNI---GE--MYNLLNFL 942
+ ++ ++ RVL G LQ+ + G NL
Sbjct: 877 ITIDMAILGSIDWACLIVDEAHRLKNNQSKFFRVL-NGYSLQHKLLLTGTPLQNNLEELF 935
Query: 943 QPASFPSLSSFE--EKF-NDLTTTQKVEELKKLVAPHMLRRLKKDAMQNIPPKTERMVPV 999
+F + F E F + K +++KKL H + L ++ + + +P
Sbjct: 936 HLLNFLTPERFHNLEGFLEEFADIAKEDQIKKL---HDM--LGPHMLRRLKADVFKNMPS 990
Query: 1000 ELSSIQAEYYRAMLTKNYQIL--RNI----GKGVAQQ-SMLNIVMQLRKVCNHPYLIP 1050
+ I M K Y+ + RN +G Q S+LN+VM L+K CNHPYL P
Sbjct: 991 KTELIVRVELSPMQKKYYKYILTRNFEALNARGGGNQVSLLNVVMDLKKCCNHPYLFP 1048
Score = 191 (72.3 bits), Expect = 5.3e-154, Sum P(5) = 5.3e-154
Identities = 29/50 (58%), Positives = 38/50 (76%)
Query: 72 DGYYYE-CVICDLGGNLLCCDSCPRTYHLQCLDPPLKRIPNGKWQCPKCT 120
D ++ E C +C GG LLCCD+CP +YH+ CL+PPL IPNG+W CP+CT
Sbjct: 467 DDHHMEFCRVCKDGGELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCT 516
Score = 178 (67.7 bits), Expect = 2.6e-150, Sum P(4) = 2.6e-150
Identities = 29/90 (32%), Positives = 49/90 (54%)
Query: 40 VTSESPRNTPSAKRRLKNEINADRSSTKKKGNDGYYYE----CVICDLGGNLLCCDSCPR 95
V+ S + ++++L+ + + DGY + C +C GG ++ CD+CPR
Sbjct: 353 VSDGSTSRSSRSRKKLRTTKKKKKGEEEVTAVDGYETDHQDYCEVCQQGGEIILCDTCPR 412
Query: 96 TYHLQCLDPPLKRIPNGKWQCPKCTQKNDQ 125
YH+ CLDP +++ P GKW CP C ++ Q
Sbjct: 413 AYHMVCLDPDMEKAPEGKWSCPHCEKEGIQ 442
Score = 81 (33.6 bits), Expect = 3.2e-48, Sum P(5) = 3.2e-48
Identities = 36/140 (25%), Positives = 70/140 (50%)
Query: 1212 KKLMLDQLFVNKSGSQKEVEDILRWGTEELFND---SPGINGKDMGENNTSIEEAVR-DL 1267
KK+M+ + FV ++ ++ + + + + + PG+ K + +++ ++
Sbjct: 1189 KKVMIYR-FVTRASVEERITQVAK--KKMMLTHLVVRPGLGSKTGSMSKQELDDILKFGT 1245
Query: 1268 EQ--KHRKRGGGLGDVYQDKCTEGSTKIVWDENAIARLLDRSNLQSGSTDLAEGDLENDM 1325
E+ K GG GD +K E S+ I +D+ AI RLLDR+ ++ T+L +G N+
Sbjct: 1246 EELFKDEATDGG-GD---NKEGEDSSVIHYDDKAIERLLDRNQDETEDTEL-QG--MNEY 1298
Query: 1326 LGSVKATEW---NEETTEDQ 1342
L S K ++ EE E++
Sbjct: 1299 LSSFKVAQYVVREEEMGEEE 1318
Score = 79 (32.9 bits), Expect = 5.3e-154, Sum P(5) = 5.3e-154
Identities = 17/53 (32%), Positives = 27/53 (50%)
Query: 596 EPAVTESAQVKGKAVSYEFLVKWVGKSNIHNSWIPESQLKVLAKRKLENYKAK 648
+P ++G+ +F VKW G S H SW+ E QL++ + NY+ K
Sbjct: 548 DPNTPSPKPLEGRP-ERQFFVKWQGMSYWHCSWVSELQLELHCQVMFRNYQRK 599
Score = 75 (31.5 bits), Expect = 1.4e-153, Sum P(5) = 1.4e-153
Identities = 24/64 (37%), Positives = 33/64 (51%)
Query: 678 REAFVKWTGLPYDECTWEKLDEPALEKYSHLTDLFVQFERQTLKKDASEDELPRGK--GD 735
R+ FVKW G+ Y C+W + E LE H +F ++R K D DE P G GD
Sbjct: 563 RQFFVKWQGMSYWHCSW--VSELQLEL--HCQVMFRNYQR---KNDM--DEPPSGDFGGD 613
Query: 736 CQQS 739
++S
Sbjct: 614 EEKS 617
Score = 56 (24.8 bits), Expect = 1.7e-137, Sum P(4) = 1.7e-137
Identities = 32/155 (20%), Positives = 53/155 (34%)
Query: 194 SSQVDVSCSTKPENTSAGVPVEGSSSCPNDDDEKQLNASPTDSLADTKFHPAEEVLP-HS 252
SS + K + G P S+ DD + LN S + + P E++ +
Sbjct: 9 SSWANSLAGRKGMASGLGSPSPCSAGSEEDDMDALLNNSLPPPHPENEEDPEEDLSEAET 68
Query: 253 QVTKSEQNDEVPVE-KHEKSSTNGSSGIKFVLAIGASERDRKRKPEVKDEDSQKKLRVDX 311
K ++ + P + K KS + +G S + PE +E+ + LR D
Sbjct: 69 PKLKKKKKPKKPRDPKIPKSKRQKKERLLLCRQLGDSSGEG---PEFVEEEEEVALRSDS 125
Query: 312 XXXXXXXXXXXXXXIGTLSPGTSKLHEKQRTNNDE 346
+G SK K+ DE
Sbjct: 126 EGSDYTPGKKKKKKLGPKKEKKSKSKRKEEEEEDE 160
Score = 55 (24.4 bits), Expect = 1.9e-12, Sum P(5) = 1.9e-12
Identities = 25/112 (22%), Positives = 52/112 (46%)
Query: 930 NNIGEMYNLLNFLQPASFPSLSSFEEKFNDLTTTQKVEE-LKKL-VAPHMLRRLKKDAMQ 987
N GE +++++ A L +++ D T Q + E L VA +++R + +
Sbjct: 1260 NKEGEDSSVIHYDDKAIERLLDRNQDETED-TELQGMNEYLSSFKVAQYVVREEEMGEEE 1318
Query: 988 NIPPKTERMVPVELSSIQAEYYRAMLTKNYQ-----ILRNIGKGVAQQSMLN 1034
+ ER + + S+ +Y+ +L +Y+ + RN+GKG + +N
Sbjct: 1319 EV----EREIIKQEESVDPDYWEKLLRHHYEQQQEDLARNLGKGKRIRKQVN 1366
Score = 54 (24.1 bits), Expect = 8.1e-09, Sum P(3) = 8.1e-09
Identities = 38/193 (19%), Positives = 75/193 (38%)
Query: 487 DRIQVYRRSVTKE--CKVTKECKG---ENAIDLLREDDKDSDPVAVNGKVQD-ESAVSTE 540
D I+V ++ +E + KE K E A++ + S+ V + + E V
Sbjct: 1584 DGIKVEENNLKEEESAEAEKEVKSVPPEAAVECTQPPAPASEEEKVPVEPPEGEEKVEKA 1643
Query: 541 DLGERNDKMVVED----ADVSLRDNEGLTVSEIHITCESTDKDVDVGKKTSGSVAKRVQE 596
++ ER ++ + D ADV + E V I E ++ + +K +
Sbjct: 1644 EVKERTEEAMETDPKGNADVE-KVEEKAAVDLTPIVVEDKEEKKEEEEKKEVMLQNGETP 1702
Query: 597 PAVTESAQVKGKAVSYEFLVKWVGKSNIHNSWIPESQLKVLAKRKLENYKAKYG----TT 652
+ + Q K + F + G + +H+ W E + + K+ E + ++
Sbjct: 1703 KDLNDEKQKKNIKQRFMFNIADGGFTELHSLWQNEERAATVTKKTYEIWHRRHDYWLLAG 1762
Query: 653 VINICDERWKQPQ 665
+IN RW+ Q
Sbjct: 1763 IINHGYARWQDIQ 1775
Score = 51 (23.0 bits), Expect = 1.6e-08, Sum P(3) = 1.6e-08
Identities = 38/171 (22%), Positives = 74/171 (43%)
Query: 434 DDFLVSENHNKILEENLACDTDLDAEVTENLAELSPNVIRSSDEECM-----KNDIGVDR 488
D V EN+ K EE+ + ++ + E E + +S+EE + + + V++
Sbjct: 1584 DGIKVEENNLKE-EESAEAEKEVKSVPPEAAVECTQPPAPASEEEKVPVEPPEGEEKVEK 1642
Query: 489 IQVYRRSVTKECKVTKECKGENAIDLLREDDK-DSDPVAVNGK-----------VQDESA 536
+V R T+E T + KG ++ + E D P+ V K V ++
Sbjct: 1643 AEVKER--TEEAMET-DPKGNADVEKVEEKAAVDLTPIVVEDKEEKKEEEEKKEVMLQNG 1699
Query: 537 VSTEDLGERNDKMVVEDADV-SLRDNEGLTVSEIHITCESTDKDVDVGKKT 586
+ +DL + K ++ + ++ D G T E+H ++ ++ V KKT
Sbjct: 1700 ETPKDLNDEKQKKNIKQRFMFNIADG-GFT--ELHSLWQNEERAATVTKKT 1747
Score = 49 (22.3 bits), Expect = 5.3e-154, Sum P(5) = 5.3e-154
Identities = 11/40 (27%), Positives = 24/40 (60%)
Query: 1323 NDMLGSVKATEWNEETTEDQAESPVAAVDDASAENSERKE 1362
ND GS + +W ++ +++Q++ VA+ ++ + ER E
Sbjct: 1368 ND--GSQEDRDWQDDQSDNQSDYSVAS-EEGDEDFDERSE 1404
Score = 41 (19.5 bits), Expect = 6.4e-136, Sum P(4) = 6.4e-136
Identities = 15/52 (28%), Positives = 25/52 (48%)
Query: 366 KDELAEETTDPLDKSDKAGVHVNEIPLCKDIVPFELQQVDRVLGCRVKGDDT 417
+++L+E T L K K + P I + Q+ +R+L CR GD +
Sbjct: 60 EEDLSEAETPKLKKKKKP-----KKPRDPKIPKSKRQKKERLLLCRQLGDSS 106
Score = 40 (19.1 bits), Expect = 2.1e-07, Sum P(3) = 2.1e-07
Identities = 35/175 (20%), Positives = 65/175 (37%)
Query: 111 NGKWQCPKCTQKNDQLKPISNLDSISKRARSKIITIKSQSGVKSSG--ADKVSQIFGNSI 168
NG+W P+ + + K +S S S + + +Q + A+ ++ N++
Sbjct: 1535 NGRWSMPELAEVEEN-KKMSQPGSPSPKTPTPSTPGDTQPNTPAPAPPAEDGIKVEENNL 1593
Query: 169 LARKRSNKGKSVLALGVKSLEKSLDSSQVDVSCSTKPENTSAGVPVEGSSSCPNDD-DEK 227
+ + K V ++ E +++ +Q S + E P EG + E+
Sbjct: 1594 KEEESAEAEKEVKSVPP---EAAVECTQPPAPASEE-EKVPVEPP-EGEEKVEKAEVKER 1648
Query: 228 QLNASPTDSLADTKFHPAEE-----VLPHSQVTKSEQNDEVPVEKHEKSSTNGSS 277
A TD + EE + P K E+ +E EK E NG +
Sbjct: 1649 TEEAMETDPKGNADVEKVEEKAAVDLTPIVVEDKEEKKEEE--EKKEVMLQNGET 1701
Score = 39 (18.8 bits), Expect = 5.3e-154, Sum P(5) = 5.3e-154
Identities = 11/44 (25%), Positives = 19/44 (43%)
Query: 26 PCGPGLSNGKEENLVTSESPRNTPSAKRRLKNEINADRSSTKKK 69
P P EE+L +E+P+ K + + +S +KK
Sbjct: 50 PPHPENEEDPEEDLSEAETPKLKKKKKPKKPRDPKIPKSKRQKK 93
>ZFIN|ZDB-GENE-041111-187 [details] [associations]
symbol:chd4a "chromodomain helicase DNA binding
protein 4a" species:7955 "Danio rerio" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0016818 "hydrolase activity, acting on acid
anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0046872 "metal
ion binding" evidence=IEA] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR002464 InterPro:IPR012957 InterPro:IPR012958
InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271 Pfam:PF00628
Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 ZFIN:ZDB-GENE-041111-187
GO:GO:0005524 GO:GO:0005634 GO:GO:0006355 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 InterPro:IPR019786
PROSITE:PS01359 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR023780 GeneTree:ENSGT00560000076896 InterPro:IPR009462
InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465 EMBL:BX004850
IPI:IPI00962864 Ensembl:ENSDART00000005453 ArrayExpress:F1QWV5
Bgee:F1QWV5 Uniprot:F1QWV5
Length = 1930
Score = 1242 (442.3 bits), Expect = 2.7e-153, Sum P(4) = 2.7e-153
Identities = 268/540 (49%), Positives = 362/540 (67%)
Query: 742 VALTEQPEELK--GGALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLY 799
+ QP+ L GG L P+QLE LNWLR W + + ILADEMGLGKTV F+ SLY
Sbjct: 694 IKFERQPDYLDTTGGTLHPYQLEGLNWLRFSWAQGTDTILADEMGLGKTVQTAVFLYSLY 753
Query: 800 CEFKAKLPCLVLVPLSTMPNWLAEFALWAPNLNVVEYHGCAKARAIIRQYEWHASD---- 855
E +K P LV PLST+ NW EF +WAP++ VV Y G +RA+IR+ E+ +
Sbjct: 754 KEGHSKGPFLVSAPLSTIINWEREFEMWAPDMYVVTYVGDKDSRAVIRENEFSFENNAIR 813
Query: 856 ----PDNLNKKTSSYKFNVLLTTYEMILADSSHLRGVPWEVLVVDEGHRXXXXXXXXXXX 911
P + KK +S KF+VLLT+YE+I D++ L + W LVVDE HR
Sbjct: 814 GGKKPSKM-KKEASVKFHVLLTSYELITIDTAVLGSIDWACLVVDEAHRLKNNQSKFFRI 872
Query: 912 XXXXXXQHRVLLTGTPLQNNIGEMYNLLNFLQPASFPSLSSFEEKFNDLTTTQKVEELKK 971
QH++LLTGTPLQNN+ E+++LLNFL P F +L F E+F D+ ++++L
Sbjct: 873 LNNYPLQHKLLLTGTPLQNNLEELFHLLNFLTPERFSNLEGFLEEFADIAKEDQIKKLHD 932
Query: 972 LVAPHMLRRLKKDAMQNIPPKTERMVPVELSSIQAEYYRAMLTKNYQILRNIGKGVAQQS 1031
++ PHMLRRLK D +++P KTE +V VELS +Q +YY+ +LT+N++ L G G Q S
Sbjct: 933 MLGPHMLRRLKADVFKHMPSKTELIVRVELSPMQKKYYKFILTRNFEALNTRGGG-NQVS 991
Query: 1032 MLNIVMQLRKVCNHPYLIPGTEPDSGSV-EFLHEMR--IKASAKLTLLHSMLKVLYKEGH 1088
+LN+VM L+K CNHPYL P ++ + ++E K+S KL LL ML+ L + GH
Sbjct: 992 LLNVVMDLKKCCNHPYLFPAAAMEAAKMPNGMYEGGGLTKSSGKLLLLQKMLRKLKEGGH 1051
Query: 1089 RVLIFSQMTKLLDILEDYLNIEFGPKTYERVDGSVSVGDRQAAITRFNQDKS-RFVFLLS 1147
RVLIFSQMTK+LD+LED+L E G K YER+DG ++ G RQ AI RFN + +FVFLLS
Sbjct: 1052 RVLIFSQMTKMLDLLEDFLENE-GYK-YERIDGGITGGMRQEAIDRFNAPGAPQFVFLLS 1109
Query: 1148 TRSCGLGINLATADTVIIYDSDFNPHADIQAMNRAHRIGQSKRLLVYRLVVRASVEERIL 1207
TR+ GLGINLATADTV+IYDSD+NPH DIQA +RAHRIGQ+K++++YR V +ASVEERI
Sbjct: 1110 TRAGGLGINLATADTVVIYDSDWNPHNDIQAFSRAHRIGQNKKVMIYRFVTKASVEERIT 1169
Query: 1208 QLAKKKLMLDQLFV-----NKSGS--QKEVEDILRWGTEELFNDSPGINGKDMGENNTSI 1260
Q+AKKK+ML L V +K+GS ++E++DIL++GTEELF D K+ G+ ++S+
Sbjct: 1170 QVAKKKMMLTHLVVRPGLGSKTGSMSKQELDDILKFGTEELFKDEGEGENKE-GQEDSSV 1228
Score = 316 (116.3 bits), Expect = 6.2e-44, Sum P(4) = 6.2e-44
Identities = 77/202 (38%), Positives = 105/202 (51%)
Query: 661 WKQPQRVISLRSSKDGTREAFVKWTGLPYDECTWE--KLDEPALEKYS----HLTDLFVQ 714
W R+++ K +KW L YD+ TWE +D P + Y + +L +
Sbjct: 604 WMVIHRILNHSVDKKNNCHYLIKWRDLTYDQATWELEDMDLPDYDTYKLQYWNHRELMMG 663
Query: 715 FERQTLKK---DASEDELPRGKGDCQQSEIVALTEQPEELK--GGALFPHQLEALNWLRK 769
E + KK +L R + + QP+ L GG L P+QLE LNWLR
Sbjct: 664 DEGKPGKKIKIKGKMRKLDRPPENPVVDPTIKFERQPDYLDTTGGTLHPYQLEGLNWLRF 723
Query: 770 CWHKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLSTMPNWLAEFALWAP 829
W + + ILADEMGLGKTV F+ SLY E +K P LV PLST+ NW EF +WAP
Sbjct: 724 SWAQGTDTILADEMGLGKTVQTAVFLYSLYKEGHSKGPFLVSAPLSTIINWEREFEMWAP 783
Query: 830 NLNVVEYHGCAKARAIIRQYEW 851
++ VV Y G +RA+IR+ E+
Sbjct: 784 DMYVVTYVGDKDSRAVIRENEF 805
Score = 195 (73.7 bits), Expect = 2.7e-153, Sum P(4) = 2.7e-153
Identities = 32/65 (49%), Positives = 43/65 (66%)
Query: 57 NEINADRSSTKKKGNDGYYYE-CVICDLGGNLLCCDSCPRTYHLQCLDPPLKRIPNGKWQ 115
+E D + + D ++ E C +C GG LLCCDSCP +YH+ CL+PPL IPNG+W
Sbjct: 411 SEGEEDNEAGGEAEEDDHHMEFCRVCKDGGELLCCDSCPSSYHIHCLNPPLPEIPNGEWI 470
Query: 116 CPKCT 120
CP+CT
Sbjct: 471 CPRCT 475
Score = 177 (67.4 bits), Expect = 2.1e-151, Sum P(4) = 2.1e-151
Identities = 33/93 (35%), Positives = 51/93 (54%)
Query: 38 NLVTSESPRNTPSAKRRLKNEINADRSSTKK-KGNDGYYYE----CVICDLGGNLLCCDS 92
N V+ + N+ S++ K + + TKK + DGY + C +C GG ++ CD+
Sbjct: 314 NSVSVSNGSNSRSSRSSAKKK---PKKKTKKDEDGDGYETDHQDYCEVCQQGGEIILCDT 370
Query: 93 CPRTYHLQCLDPPLKRIPNGKWQCPKCTQKNDQ 125
CPR YH+ CLDP +++ P G W CP C + Q
Sbjct: 371 CPRAYHMVCLDPDMEKAPEGTWSCPHCEKMGIQ 403
Score = 84 (34.6 bits), Expect = 6.2e-44, Sum P(4) = 6.2e-44
Identities = 34/149 (22%), Positives = 70/149 (46%)
Query: 1212 KKLMLDQLFVNKSGSQKEVEDILRWGTEELFND---SPGINGKDMGENNTSIEEAVR-DL 1267
KK+M+ + FV K+ ++ + + + + + PG+ K + +++ ++
Sbjct: 1151 KKVMIYR-FVTKASVEERITQVAK--KKMMLTHLVVRPGLGSKTGSMSKQELDDILKFGT 1207
Query: 1268 EQKHRKRGGGLGDVYQDKCTEGSTKIVWDENAIARLLDRSNLQSGSTDLAEGDLENDMLG 1327
E+ + G G Q E S+ I +D+ AI RLLDR+ +TD E N+ L
Sbjct: 1208 EELFKDEGEGENKEGQ----EDSSVIHYDDKAIDRLLDRNQ---DATDDTELQSMNEYLS 1260
Query: 1328 SVKATEW---NEETTEDQAESPVAAVDDA 1353
S K ++ +EE E++ + + +++
Sbjct: 1261 SFKVAQYVVKDEEEAEEEVQREIIKQEES 1289
Score = 77 (32.2 bits), Expect = 2.7e-153, Sum P(4) = 2.7e-153
Identities = 15/36 (41%), Positives = 20/36 (55%)
Query: 613 EFLVKWVGKSNIHNSWIPESQLKVLAKRKLENYKAK 648
EF VKW S H SW+ E QL++ + NY+ K
Sbjct: 523 EFFVKWQNMSYWHCSWVTELQLEIHCQVMFRNYQRK 558
Score = 73 (30.8 bits), Expect = 6.0e-11, Sum P(3) = 6.0e-11
Identities = 48/206 (23%), Positives = 74/206 (35%)
Query: 103 DPPLKRIPNGKWQCPKCTQKNDQLKP-ISNLDSISKRARSKIITIKSQSGVKSSGADKVS 161
D P K G P TQ N + + K A + +K+ G K + +K S
Sbjct: 1520 DSPSKTPTTGT---PSDTQPNTPAPDGVPKAEDAGKDADKE--KVKNGDGEKEANENKNS 1574
Query: 162 QIF------GNSILARKRSNKGKSVLALGVKSLEKSLDSSQVDVSCSTKPENTSAGVPVE 215
++ G + A + KGK K+ E S ++ + D K E +
Sbjct: 1575 EVIAVPDEDGRAASASEEKEKGKEEKE---KTPESSSEAEKADGKQEEKEEENAKS---- 1627
Query: 216 GSSSCPNDDDEKQLNASPTDSLADTKFHPAE---EVLPHSQVT--KSEQNDEVPVEKHEK 270
G S DD +K + +D K + E + + VT K Q DE K E+
Sbjct: 1628 GDSEEKTDDTDKPKGSEADKETSDAKGEKKDDEPEKMDTTPVTDEKKGQKDEKDSGKTEE 1687
Query: 271 SST--NGSSGIKFVLAIGASERDRKR 294
+ NG S G ER + +
Sbjct: 1688 AGKLPNGESAKDSAAGAGIEERKKAK 1713
Score = 66 (28.3 bits), Expect = 3.9e-152, Sum P(4) = 3.9e-152
Identities = 23/67 (34%), Positives = 34/67 (50%)
Query: 678 REAFVKWTGLPYDECTWEKLDEPALEKYSHLTDLFVQFERQTLKKDASEDELPR----GK 733
RE FVKW + Y C+W + E LE H +F ++R K D DE P G+
Sbjct: 522 REFFVKWQNMSYWHCSW--VTELQLE--IHCQVMFRNYQR---KNDM--DEPPPIDFGGE 572
Query: 734 GDCQQSE 740
G+ ++S+
Sbjct: 573 GEEEKSD 579
Score = 62 (26.9 bits), Expect = 2.7e-153, Sum P(4) = 2.7e-153
Identities = 14/50 (28%), Positives = 29/50 (58%)
Query: 1328 SVKATEWNEETTEDQAESPVAA--VDDASAENSERKEENAVTGIEENEWD 1375
+ A+E E+ E++ ++P ++ + A + E++EENA +G E + D
Sbjct: 1586 AASASEEKEKGKEEKEKTPESSSEAEKADGKQEEKEEENAKSGDSEEKTD 1635
Score = 53 (23.7 bits), Expect = 2.4e-152, Sum P(4) = 2.4e-152
Identities = 12/43 (27%), Positives = 25/43 (58%)
Query: 1323 NDMLGSVKATEWNEETTEDQAESPVAAVDDASAENSERKEENA 1365
ND GS + +W ++ ++ Q++ VA+ ++ + ER E N+
Sbjct: 1327 ND--GSQEDRDWQDDQSDGQSDYSVAS-EEGDEDFDERSEANS 1366
Score = 53 (23.7 bits), Expect = 3.3e-42, Sum P(5) = 3.3e-42
Identities = 15/86 (17%), Positives = 42/86 (48%)
Query: 955 EKFNDLTTTQKVEELKKLVAPHMLRR-LKKDAMQNIPPKTERMVPVELSSIQAEYYRAML 1013
++ D T +++ + + ++ + + + KD + + +R + + S+ +Y+ +L
Sbjct: 1241 DRNQDATDDTELQSMNEYLSSFKVAQYVVKDE-EEAEEEVQREIIKQEESVDPDYWEKLL 1299
Query: 1014 TKNYQ-----ILRNIGKGVAQQSMLN 1034
+Y+ + RN+GKG + +N
Sbjct: 1300 RHHYEQQQEDLARNLGKGKRIRKQVN 1325
Score = 47 (21.6 bits), Expect = 1.0e-151, Sum P(4) = 1.0e-151
Identities = 26/112 (23%), Positives = 49/112 (43%)
Query: 1261 EEAVRDLEQKHRKRGGGLGDVYQDKCTE--------GSTKIVWDENAIARLLDRSNLQSG 1312
E+A +D +++ K G G + ++K +E G +E + +S
Sbjct: 1548 EDAGKDADKEKVKNGDGEKEANENKNSEVIAVPDEDGRAASASEEKEKGKEEKEKTPESS 1607
Query: 1313 S-TDLAEGDLENDMLGSVKATEWNEETTEDQAESPVAAVDDASAENSERKEE 1363
S + A+G E + K+ + +EE T+D + P + +A E S+ K E
Sbjct: 1608 SEAEKADGKQEEKEEENAKSGD-SEEKTDD-TDKPKGS--EADKETSDAKGE 1655
Score = 45 (20.9 bits), Expect = 1.5e-09, Sum P(2) = 1.5e-09
Identities = 18/47 (38%), Positives = 24/47 (51%)
Query: 501 KVTKECKGENAIDLLREDDK-DSDPVAVNGKVQ-DES-AVSTEDLGE 544
K T + KGE D E +K D+ PV K Q DE + TE+ G+
Sbjct: 1647 KETSDAKGEKKDD---EPEKMDTTPVTDEKKGQKDEKDSGKTEEAGK 1690
Score = 45 (20.9 bits), Expect = 1.5e-09, Sum P(2) = 1.5e-09
Identities = 17/69 (24%), Positives = 26/69 (37%)
Query: 540 EDLGERNDKMVVEDADVSLRDNEGLTVSEIHITCESTDKDVDVGKKTSGSVAKRVQEPAV 599
ED G+ DK V++ D NE I + E +K G K +
Sbjct: 1548 EDAGKDADKEKVKNGDGEKEANENKNSEVIAVPDEDGRAASASEEKEKGKEEKEKTPESS 1607
Query: 600 TESAQVKGK 608
+E+ + GK
Sbjct: 1608 SEAEKADGK 1616
Score = 44 (20.5 bits), Expect = 2.0e-137, Sum P(4) = 2.0e-137
Identities = 17/57 (29%), Positives = 28/57 (49%)
Query: 255 TKSEQNDEVPVEKHEK-SSTNGSSGIKFVLAIGASERDRKRKPEVK----DEDSQKK 306
++SE +D P K +K +ST A S ++R+PE + D+DS+ K
Sbjct: 82 SESEGSDYTPGRKKKKRASTAKDKKRNSSAAERNSAASKRREPEEEEDEDDDDSEPK 138
Score = 44 (20.5 bits), Expect = 8.4e-40, Sum P(4) = 8.4e-40
Identities = 18/86 (20%), Positives = 39/86 (45%)
Query: 1288 EGSTKIVWDENAIARLLDRSNLQSGSTDLAEGDLENDM-LGSVKA--TEWNEETTEDQAE 1344
E T++ + + L+ R L S + +++ +L++ + G+ + E E E Q +
Sbjct: 1166 ERITQVAKKKMMLTHLVVRPGLGSKTGSMSKQELDDILKFGTEELFKDEGEGENKEGQED 1225
Query: 1345 SPVAAVDDASAENSERKEENAVTGIE 1370
S V DD + + + ++A E
Sbjct: 1226 SSVIHYDDKAIDRLLDRNQDATDDTE 1251
Score = 43 (20.2 bits), Expect = 5.4e-140, Sum P(5) = 5.4e-140
Identities = 30/138 (21%), Positives = 55/138 (39%)
Query: 176 KGKSVLALGVKSLEKSLDSSQVDVSCSTKPENTSAGVPVEGSSSC----PNDDDEKQLNA 231
+G + + S+E ++ + PE+T A PV + + PN + +
Sbjct: 208 RGSATSLVAAASVETPPETPTSASAAQISPESTPAA-PVRKAKTKEGKGPNARKKSKPAP 266
Query: 232 SPTDSLADTK-FHPAEEVLP--HSQVTKSE-QNDEVPVEKHEKSSTNGSSGIKFVLAIGA 287
P + TK P + L +S+ +S + D+V V+ + S + +
Sbjct: 267 KPQEKKVKTKKVAPLKIKLGGFNSKRKRSSSEEDDVDVDSDFDDGSINSVSVSNGSNSRS 326
Query: 288 SERDRKRKPEVK---DED 302
S K+KP+ K DED
Sbjct: 327 SRSSAKKKPKKKTKKDED 344
Score = 42 (19.8 bits), Expect = 5.4e-140, Sum P(5) = 5.4e-140
Identities = 16/72 (22%), Positives = 33/72 (45%)
Query: 1 MKDNSSSTSTMINRNWVLKRKRRKLPCGPGLSNGKEENLVTSESPRNTPSAKRRL-KNEI 59
+ D S ++ RK++K S K++ +S + RN+ ++KRR + E
Sbjct: 74 LDDGEEDRSESEGSDYTPGRKKKKRA-----STAKDKKRNSSAAERNSAASKRREPEEEE 128
Query: 60 NADRSSTKKKGN 71
+ D ++ K +
Sbjct: 129 DEDDDDSEPKSS 140
Score = 38 (18.4 bits), Expect = 9.1e-151, Sum P(4) = 9.1e-151
Identities = 7/25 (28%), Positives = 14/25 (56%)
Query: 1351 DDASAENSERKEENAVTGIEENEWD 1375
D+ EN E +E+++V ++ D
Sbjct: 1213 DEGEGENKEGQEDSSVIHYDDKAID 1237
Score = 37 (18.1 bits), Expect = 9.2e-13, Sum P(4) = 9.2e-13
Identities = 8/31 (25%), Positives = 19/31 (61%)
Query: 722 KDASEDELPRGKGDCQ-----QSEIVALTEQ 747
KDA ++++ G G+ + SE++A+ ++
Sbjct: 1552 KDADKEKVKNGDGEKEANENKNSEVIAVPDE 1582
Score = 37 (18.1 bits), Expect = 6.0e-11, Sum P(3) = 6.0e-11
Identities = 12/51 (23%), Positives = 27/51 (52%)
Query: 417 TSSSCHISATATDDRHSDDFLVSENHNKILEENLACDTDLDAEVTENLAEL 467
T H S A + R S+ ++E+H + +E+++ + +A + + L +L
Sbjct: 1828 TEDPSHPSM-ALNTRFSEVECLAESHQHLSKESMSGNKPANAVLHKVLKQL 1877
>WB|WBGene00000482 [details] [associations]
symbol:chd-3 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0016818 "hydrolase activity,
acting on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0006338 "chromatin remodeling" evidence=TAS]
[GO:0040027 "negative regulation of vulval development"
evidence=IMP] [GO:0046580 "negative regulation of Ras protein
signal transduction" evidence=IMP] [GO:0001709 "cell fate
determination" evidence=IMP] [GO:0000118 "histone deacetylase
complex" evidence=ISS] [GO:0003682 "chromatin binding"
evidence=TAS] [GO:0003678 "DNA helicase activity" evidence=ISS]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012957 InterPro:IPR012958 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00628 Pfam:PF08073 Pfam:PF08074
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194
SMART:SM00184 SMART:SM00249 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0006355 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 GO:GO:0003682 GO:GO:0006338
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 InterPro:IPR019786 PROSITE:PS01359 GO:GO:0040027
InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0003678
GO:GO:0001709 GO:GO:0046580 GO:GO:0008026 InterPro:IPR023780
PROSITE:PS00598 GO:GO:0000118 GeneTree:ENSGT00560000076896
EMBL:AF308444 EMBL:Z67884 EMBL:Z67881 PIR:T20160 RefSeq:NP_510140.1
UniGene:Cel.16950 ProteinModelPortal:Q22516 SMR:Q22516
STRING:Q22516 PaxDb:Q22516 EnsemblMetazoa:T14G8.1 GeneID:181421
KEGG:cel:CELE_T14G8.1 UCSC:T14G8.1 CTD:181421 WormBase:T14G8.1
HOGENOM:HOG000231124 InParanoid:Q22516 OMA:INIIMEL NextBio:913870
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
Uniprot:Q22516
Length = 1787
Score = 1190 (424.0 bits), Expect = 6.0e-153, Sum P(7) = 6.0e-153
Identities = 262/567 (46%), Positives = 359/567 (63%)
Query: 716 ERQTLKKDASEDELPRGKGDCQQSEIVALTE-QPEELK--GGALFPHQLEALNWLRKCWH 772
+R+ EDE+ + ++ +I+ E QP+ + GG L P+QLE +NWLR CW
Sbjct: 573 QREAKGLGPKEDEVTSRRKKREKIDILKKYEVQPDFISETGGNLHPYQLEGINWLRHCWS 632
Query: 773 KSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLSTMPNWLAEFALWAPNLN 832
+ ILADEMGLGKTV + F+ +L E K P L+ PLST+ NW E LW P+
Sbjct: 633 NGTDAILADEMGLGKTVQSLTFLYTLMKEGHTKGPFLIAAPLSTIINWEREAELWCPDFY 692
Query: 833 VVEYHGCAKARAIIRQYEWHASD------PDNLNKKT-SSYKFNVLLTTYEMILADSSHL 885
VV Y G ++R +IR++E+ D P KT + KF+VLLT+YE I D + L
Sbjct: 693 VVTYVGDRESRMVIREHEFSFVDGAVRGGPKVSKIKTLENLKFHVLLTSYECINMDKAIL 752
Query: 886 RGVPWEVLVVDEGHRXXXXXXXXXXXXXXXXXQHRVLLTGTPLQNNIGEMYNLLNFLQPA 945
+ W LVVDE HR Q+RVLLTGTPLQNN+ E+++LLNFL P
Sbjct: 753 SSIDWAALVVDEAHRLKNNQSTFFKNLREYNIQYRVLLTGTPLQNNLEELFHLLNFLAPD 812
Query: 946 SFPSLSSFEEKFNDLTTTQKVEELKKLVAPHMLRRLKKDAMQNIPPKTERMVPVELSSIQ 1005
F L SF +F++++ ++E+L L+ PHMLRRLK D + +P K E +V VELS++Q
Sbjct: 813 RFNQLESFTAEFSEISKEDQIEKLHNLLGPHMLRRLKADVLTGMPSKQELIVRVELSAMQ 872
Query: 1006 AEYYRAMLTKNYQILRNIGKGVAQQSMLNIVMQLRKVCNHPYLIPGTEPDSGSVEF-LHE 1064
+YY+ +LT+N+ L N+ G Q S++NI+M+L+K CNHPYL ++ ++ ++E
Sbjct: 873 KKYYKNILTRNFDAL-NVKNGGTQMSLINIIMELKKCCNHPYLFMKACLEAPKLKNGMYE 931
Query: 1065 --MRIKASAKLTLLHSMLKVLYKEGHRVLIFSQMTKLLDILEDYLNIEFGPKTYERVDGS 1122
IK + K LL ML+ L GHRVLIFSQMT +LDILED+ ++E G K YER+DGS
Sbjct: 932 GSALIKNAGKFVLLQKMLRKLKDGGHRVLIFSQMTMMLDILEDFCDVE-GYK-YERIDGS 989
Query: 1123 VSVGDRQAAITRFNQDKSR-FVFLLSTRSCGLGINLATADTVIIYDSDFNPHADIQAMNR 1181
++ RQ AI R+N ++ FVFLLSTR+ GLGINLATADTVIIYDSD+NPH DIQA +R
Sbjct: 990 ITGQQRQDAIDRYNAPGAKQFVFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSR 1049
Query: 1182 AHRIGQSKRLLVYRLVVRASVEERILQLAKKKLMLDQLFVN--------KSGSQKEVEDI 1233
AHR+GQ ++++YR V + SVEERI +AKKK++L L V KS S+ E++D+
Sbjct: 1050 AHRLGQKHKVMIYRFVTKGSVEERITSVAKKKMLLTHLVVRAGLGAKDGKSMSKTELDDV 1109
Query: 1234 LRWGTEELFNDSPG-INGKDMGENNTS 1259
LRWGTEELF + + G D GE +S
Sbjct: 1110 LRWGTEELFKEEEAPVEGAD-GEGTSS 1135
Score = 160 (61.4 bits), Expect = 6.0e-153, Sum P(7) = 6.0e-153
Identities = 26/51 (50%), Positives = 32/51 (62%)
Query: 69 KGNDGYYYECVICDLGGNLLCCDSCPRTYHLQCLDPPLKRIPNGKWQCPKC 119
K N Y C IC N+L CD+CP +YH C+DPPL IP G+W CP+C
Sbjct: 325 KANMDY---CRICKETSNILLCDTCPSSYHAYCIDPPLTEIPEGEWSCPRC 372
Score = 151 (58.2 bits), Expect = 4.1e-148, Sum P(6) = 4.1e-148
Identities = 27/90 (30%), Positives = 48/90 (53%)
Query: 34 GKEENLVTSESPRNTPSAKRRLKNEINADRSSTKKKG--NDGYYYECVICDLGGNLLCCD 91
GKEE + + + K L++ A + + K++G + + C +C+ G L+ CD
Sbjct: 224 GKEEARINRAAAK-VDKRKAALESA-RASKRARKEQGVVEENHQENCEVCNQDGELMLCD 281
Query: 92 SCPRTYHLQCLDPPLKRIPNGKWQCPKCTQ 121
+C R YH+ C+D +++ P G W CP C +
Sbjct: 282 TCTRAYHVACIDENMEQPPEGDWSCPHCEE 311
Score = 89 (36.4 bits), Expect = 6.0e-153, Sum P(7) = 6.0e-153
Identities = 28/99 (28%), Positives = 47/99 (47%)
Query: 661 WKQPQRVISLRSSKDGTREAFVKWTGLPYDECTWEKLD------EPALEKYSHLTDLFVQ 714
W Q R+I+ S ++ VKW L Y+ TWE+ D E A+ KY H + +
Sbjct: 500 WMQIHRIINHLSYAKSQQDYLVKWKELSYEHATWERDDTDIANYEDAIIKYWHHRERMLN 559
Query: 715 FE--RQTLKKDASEDELPRGKGDCQQSEIVALTEQPEEL 751
E R K A + E +G G ++ E+ + ++ E++
Sbjct: 560 DEVPRNVQKMIAKQREA-KGLGP-KEDEVTSRRKKREKI 596
Score = 81 (33.6 bits), Expect = 3.2e-12, Sum P(6) = 3.2e-12
Identities = 35/163 (21%), Positives = 69/163 (42%)
Query: 1211 KKKLMLDQLFVNKSGSQKEVEDILRWGTEELFND---SPGINGKD-MGENNTSIEEAVR- 1265
K K+M+ + FV K ++ + + + + L G+ KD + T +++ +R
Sbjct: 1056 KHKVMIYR-FVTKGSVEERITSVAK--KKMLLTHLVVRAGLGAKDGKSMSKTELDDVLRW 1112
Query: 1266 DLEQKHRKRG----GGLGDVYQDKCTEGSTKIVWDENAIARLLDRSNLQSGSTDLAEGDL 1321
E+ ++ G G+ K +IVWD+ A+ LLDR+ + G +
Sbjct: 1113 GTEELFKEEEAPVEGADGEGTSSK-KPNEQEIVWDDAAVDFLLDRNKEEEGQDGEKKEHW 1171
Query: 1322 ENDMLGSVKATEWNEETTEDQAESPVAAVDDASAENSERKEEN 1364
N+ L S K +N + +D + + E +E ++ N
Sbjct: 1172 TNEYLSSFKVATYNTKEADDADDDEDET--EVIKEGTEEQDPN 1212
Score = 76 (31.8 bits), Expect = 1.4e-07, Sum P(5) = 1.4e-07
Identities = 28/107 (26%), Positives = 48/107 (44%)
Query: 530 KVQDESAVSTE-DLGERNDKMVVEDADVSLRDNEGLT-VSEIHITCESTDKDVDVGKKTS 587
KVQ+ + E + E +KM+ A S+ + G+ + E I + T DVD T
Sbjct: 1403 KVQEFEKFNGEWSMPETREKMLATAAQASVSNLPGMIKIKEEPIDIDETPMDVDQSNITK 1462
Query: 588 GSVAKRVQEPAVTESAQVKGKAVSYEFLVKWVGKSNIHNSWIPESQL 634
+ E V E + K + Y+F + G + +H+ WI E ++
Sbjct: 1463 --TEELASEVKVEE--EPKAPRLPYKFNICDGGYTELHSLWINEEKV 1505
Score = 63 (27.2 bits), Expect = 2.2e-147, Sum P(6) = 2.2e-147
Identities = 17/48 (35%), Positives = 24/48 (50%)
Query: 658 DERWKQPQRVISLRSSKDGTREAFVKWTGLPYDECTWEKLDEPALEKY 705
D+ + +P R + R RE FVKW L Y +C W L E ++ Y
Sbjct: 409 DDVFLKPPRKMEPRRE----REFFVKWKYLAYWQCEW--LSETLMDVY 450
Score = 50 (22.7 bits), Expect = 1.7e-141, Sum P(7) = 1.7e-141
Identities = 13/52 (25%), Positives = 24/52 (46%)
Query: 257 SEQNDEVPVEKHEKSSTNGSSGIKFVLAIGASERDRKRKPEVKDEDSQKKLR 308
S+Q E +++HEK G + A+ + KRK ++ + K+ R
Sbjct: 203 SDQEFEALIKQHEKQQDEAEKGKEEARINRAAAKVDKRKAALESARASKRAR 254
Score = 48 (22.0 bits), Expect = 6.0e-153, Sum P(7) = 6.0e-153
Identities = 12/44 (27%), Positives = 21/44 (47%)
Query: 34 GKEENLVTSESPRNTPSAKRRLK---NEINADRSSTKKKGNDGY 74
G++E V +E + P+ + K + + S+KKK N Y
Sbjct: 33 GEDEEEVETEESQGVPTTSEKKKPPPKKKKGGKKSSKKKNNCDY 76
Score = 45 (20.9 bits), Expect = 3.1e-05, Sum P(4) = 3.1e-05
Identities = 14/55 (25%), Positives = 23/55 (41%)
Query: 328 TLSPGTSKLHEKQRTNNDEVSASLCEVDVGTKGLDAQRKDELAEETTDPLDKSDK 382
T+ P L + + +DE E + +A R +A +P+D SDK
Sbjct: 1719 TIQPKFPSLFDCNLSPDDEPID--IEGSISAAVAEASRASSIAATKDEPMDTSDK 1771
Score = 45 (20.9 bits), Expect = 6.3e-05, Sum P(5) = 6.3e-05
Identities = 21/88 (23%), Positives = 41/88 (46%)
Query: 337 HEKQRTNNDEVSASLCEVDVG---TKGLDAQRKDELAE-----ETTDPLDKSDKAGVHVN 388
H ++R NDEV ++ ++ KGL ++DE+ E D L K + ++
Sbjct: 552 HHRERMLNDEVPRNVQKMIAKQREAKGL-GPKEDEVTSRRKKREKIDILKKYEVQPDFIS 610
Query: 389 EIPLCKDIVPFELQQVDRVLGCRVKGDD 416
E ++ P++L+ ++ + C G D
Sbjct: 611 ETG--GNLHPYQLEGINWLRHCWSNGTD 636
Score = 44 (20.5 bits), Expect = 6.0e-153, Sum P(7) = 6.0e-153
Identities = 14/62 (22%), Positives = 26/62 (41%)
Query: 1221 VNKSGSQKEVEDILRWGTEELFNDSPGIN--------GKDMGENNTSIEEAVRDLEQKHR 1272
+ K G K V + + +E + D N G + G +N + + D E++ R
Sbjct: 1230 LQKLGKGKRVRRQVNYASENMGQDWSAQNNQQQEEDDGSEYGSDNGELLQTDEDYEERRR 1289
Query: 1273 KR 1274
+R
Sbjct: 1290 RR 1291
Score = 41 (19.5 bits), Expect = 4.3e-145, Sum P(6) = 4.3e-145
Identities = 10/32 (31%), Positives = 17/32 (53%)
Query: 498 KECKVTKECKGENAIDLLREDDKDSDPVAVNG 529
KE +VT K ID+L++ + D ++ G
Sbjct: 582 KEDEVTSRRKKREKIDILKKYEVQPDFISETG 613
Score = 41 (19.5 bits), Expect = 3.1e-05, Sum P(4) = 3.1e-05
Identities = 13/56 (23%), Positives = 22/56 (39%)
Query: 111 NGKWQCPKCTQK---NDQLKPISNLDSISKRARSKIITIKSQSGVKSSGADKVSQI 163
NG+W P+ +K +SNL + K I ++ V S K ++
Sbjct: 1411 NGEWSMPETREKMLATAAQASVSNLPGMIKIKEEPIDIDETPMDVDQSNITKTEEL 1466
Score = 40 (19.1 bits), Expect = 1.6e-152, Sum P(7) = 1.6e-152
Identities = 8/33 (24%), Positives = 13/33 (39%)
Query: 1334 WNEETTEDQAESPVAAVDDASAENSERKEENAV 1366
W E + E+PV D + + E+ V
Sbjct: 1112 WGTEELFKEEEAPVEGADGEGTSSKKPNEQEIV 1144
Score = 40 (19.1 bits), Expect = 5.5e-145, Sum P(6) = 5.5e-145
Identities = 7/16 (43%), Positives = 10/16 (62%)
Query: 613 EFLVKWVGKSNIHNSW 628
++LVKW S H +W
Sbjct: 518 DYLVKWKELSYEHATW 533
Score = 39 (18.8 bits), Expect = 7.0e-145, Sum P(6) = 7.0e-145
Identities = 9/33 (27%), Positives = 20/33 (60%)
Query: 611 SYE-FLVK-WVGKSNIHNSWIPESQLKVLAKRK 641
+YE ++K W + + N +P + K++AK++
Sbjct: 542 NYEDAIIKYWHHRERMLNDEVPRNVQKMIAKQR 574
Score = 38 (18.4 bits), Expect = 6.0e-153, Sum P(7) = 6.0e-153
Identities = 8/24 (33%), Positives = 12/24 (50%)
Query: 613 EFLVKWVGKSNIHNSWIPESQLKV 636
EF VKW + W+ E+ + V
Sbjct: 426 EFFVKWKYLAYWQCEWLSETLMDV 449
Score = 37 (18.1 bits), Expect = 6.0e-153, Sum P(7) = 6.0e-153
Identities = 8/23 (34%), Positives = 14/23 (60%)
Query: 391 PLCKDIVPFELQQVDRVLGCRVK 413
P C I+P Q+++++L R K
Sbjct: 370 PRC--IIPEPAQRIEKILSWRWK 390
Score = 37 (18.1 bits), Expect = 3.2e-152, Sum P(7) = 3.2e-152
Identities = 14/65 (21%), Positives = 28/65 (43%)
Query: 1209 LAKKKLMLDQLFVNKSGSQKEVEDILRWGT--EELFNDSPGINGKDMGENNTSIEEAVRD 1266
LAK ++ L N + ++RWG ++L S + +D+ + + +A
Sbjct: 1302 LAKVNGQIEVLGFNPRQRKAFYNAVMRWGMPPQDLTQSSWQV--RDLRNKSEKVFKAYSS 1359
Query: 1267 LEQKH 1271
L +H
Sbjct: 1360 LFMRH 1364
Score = 37 (18.1 bits), Expect = 6.3e-05, Sum P(5) = 6.3e-05
Identities = 10/31 (32%), Positives = 17/31 (54%)
Query: 542 LGERNDKMVVEDADVSLRDNE---GLTVSEI 569
+G+R +MV+ + + S D G VS+I
Sbjct: 697 VGDRESRMVIREHEFSFVDGAVRGGPKVSKI 727
>UNIPROTKB|Q22516 [details] [associations]
symbol:chd-3 "Chromodomain-helicase-DNA-binding protein 3
homolog" species:6239 "Caenorhabditis elegans" [GO:0032508 "DNA
duplex unwinding" evidence=ISS] InterPro:IPR001841
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
InterPro:IPR001965 InterPro:IPR002464 InterPro:IPR012957
InterPro:IPR012958 InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271
Pfam:PF00628 Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690
PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184
SMART:SM00249 SMART:SM00298 SMART:SM00490 Pfam:PF00385
GO:GO:0005524 GO:GO:0006355 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 GO:GO:0003682 GO:GO:0006338 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 GO:GO:0040027 InterPro:IPR016197
SUPFAM:SSF54160 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0003678 GO:GO:0001709 GO:GO:0046580
GO:GO:0008026 InterPro:IPR023780 PROSITE:PS00598 GO:GO:0000118
GeneTree:ENSGT00560000076896 EMBL:AF308444 EMBL:Z67884 EMBL:Z67881
PIR:T20160 RefSeq:NP_510140.1 UniGene:Cel.16950
ProteinModelPortal:Q22516 SMR:Q22516 STRING:Q22516 PaxDb:Q22516
EnsemblMetazoa:T14G8.1 GeneID:181421 KEGG:cel:CELE_T14G8.1
UCSC:T14G8.1 CTD:181421 WormBase:T14G8.1 HOGENOM:HOG000231124
InParanoid:Q22516 OMA:INIIMEL NextBio:913870 InterPro:IPR009462
InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465 Uniprot:Q22516
Length = 1787
Score = 1190 (424.0 bits), Expect = 6.0e-153, Sum P(7) = 6.0e-153
Identities = 262/567 (46%), Positives = 359/567 (63%)
Query: 716 ERQTLKKDASEDELPRGKGDCQQSEIVALTE-QPEELK--GGALFPHQLEALNWLRKCWH 772
+R+ EDE+ + ++ +I+ E QP+ + GG L P+QLE +NWLR CW
Sbjct: 573 QREAKGLGPKEDEVTSRRKKREKIDILKKYEVQPDFISETGGNLHPYQLEGINWLRHCWS 632
Query: 773 KSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLSTMPNWLAEFALWAPNLN 832
+ ILADEMGLGKTV + F+ +L E K P L+ PLST+ NW E LW P+
Sbjct: 633 NGTDAILADEMGLGKTVQSLTFLYTLMKEGHTKGPFLIAAPLSTIINWEREAELWCPDFY 692
Query: 833 VVEYHGCAKARAIIRQYEWHASD------PDNLNKKT-SSYKFNVLLTTYEMILADSSHL 885
VV Y G ++R +IR++E+ D P KT + KF+VLLT+YE I D + L
Sbjct: 693 VVTYVGDRESRMVIREHEFSFVDGAVRGGPKVSKIKTLENLKFHVLLTSYECINMDKAIL 752
Query: 886 RGVPWEVLVVDEGHRXXXXXXXXXXXXXXXXXQHRVLLTGTPLQNNIGEMYNLLNFLQPA 945
+ W LVVDE HR Q+RVLLTGTPLQNN+ E+++LLNFL P
Sbjct: 753 SSIDWAALVVDEAHRLKNNQSTFFKNLREYNIQYRVLLTGTPLQNNLEELFHLLNFLAPD 812
Query: 946 SFPSLSSFEEKFNDLTTTQKVEELKKLVAPHMLRRLKKDAMQNIPPKTERMVPVELSSIQ 1005
F L SF +F++++ ++E+L L+ PHMLRRLK D + +P K E +V VELS++Q
Sbjct: 813 RFNQLESFTAEFSEISKEDQIEKLHNLLGPHMLRRLKADVLTGMPSKQELIVRVELSAMQ 872
Query: 1006 AEYYRAMLTKNYQILRNIGKGVAQQSMLNIVMQLRKVCNHPYLIPGTEPDSGSVEF-LHE 1064
+YY+ +LT+N+ L N+ G Q S++NI+M+L+K CNHPYL ++ ++ ++E
Sbjct: 873 KKYYKNILTRNFDAL-NVKNGGTQMSLINIIMELKKCCNHPYLFMKACLEAPKLKNGMYE 931
Query: 1065 --MRIKASAKLTLLHSMLKVLYKEGHRVLIFSQMTKLLDILEDYLNIEFGPKTYERVDGS 1122
IK + K LL ML+ L GHRVLIFSQMT +LDILED+ ++E G K YER+DGS
Sbjct: 932 GSALIKNAGKFVLLQKMLRKLKDGGHRVLIFSQMTMMLDILEDFCDVE-GYK-YERIDGS 989
Query: 1123 VSVGDRQAAITRFNQDKSR-FVFLLSTRSCGLGINLATADTVIIYDSDFNPHADIQAMNR 1181
++ RQ AI R+N ++ FVFLLSTR+ GLGINLATADTVIIYDSD+NPH DIQA +R
Sbjct: 990 ITGQQRQDAIDRYNAPGAKQFVFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSR 1049
Query: 1182 AHRIGQSKRLLVYRLVVRASVEERILQLAKKKLMLDQLFVN--------KSGSQKEVEDI 1233
AHR+GQ ++++YR V + SVEERI +AKKK++L L V KS S+ E++D+
Sbjct: 1050 AHRLGQKHKVMIYRFVTKGSVEERITSVAKKKMLLTHLVVRAGLGAKDGKSMSKTELDDV 1109
Query: 1234 LRWGTEELFNDSPG-INGKDMGENNTS 1259
LRWGTEELF + + G D GE +S
Sbjct: 1110 LRWGTEELFKEEEAPVEGAD-GEGTSS 1135
Score = 160 (61.4 bits), Expect = 6.0e-153, Sum P(7) = 6.0e-153
Identities = 26/51 (50%), Positives = 32/51 (62%)
Query: 69 KGNDGYYYECVICDLGGNLLCCDSCPRTYHLQCLDPPLKRIPNGKWQCPKC 119
K N Y C IC N+L CD+CP +YH C+DPPL IP G+W CP+C
Sbjct: 325 KANMDY---CRICKETSNILLCDTCPSSYHAYCIDPPLTEIPEGEWSCPRC 372
Score = 151 (58.2 bits), Expect = 4.1e-148, Sum P(6) = 4.1e-148
Identities = 27/90 (30%), Positives = 48/90 (53%)
Query: 34 GKEENLVTSESPRNTPSAKRRLKNEINADRSSTKKKG--NDGYYYECVICDLGGNLLCCD 91
GKEE + + + K L++ A + + K++G + + C +C+ G L+ CD
Sbjct: 224 GKEEARINRAAAK-VDKRKAALESA-RASKRARKEQGVVEENHQENCEVCNQDGELMLCD 281
Query: 92 SCPRTYHLQCLDPPLKRIPNGKWQCPKCTQ 121
+C R YH+ C+D +++ P G W CP C +
Sbjct: 282 TCTRAYHVACIDENMEQPPEGDWSCPHCEE 311
Score = 89 (36.4 bits), Expect = 6.0e-153, Sum P(7) = 6.0e-153
Identities = 28/99 (28%), Positives = 47/99 (47%)
Query: 661 WKQPQRVISLRSSKDGTREAFVKWTGLPYDECTWEKLD------EPALEKYSHLTDLFVQ 714
W Q R+I+ S ++ VKW L Y+ TWE+ D E A+ KY H + +
Sbjct: 500 WMQIHRIINHLSYAKSQQDYLVKWKELSYEHATWERDDTDIANYEDAIIKYWHHRERMLN 559
Query: 715 FE--RQTLKKDASEDELPRGKGDCQQSEIVALTEQPEEL 751
E R K A + E +G G ++ E+ + ++ E++
Sbjct: 560 DEVPRNVQKMIAKQREA-KGLGP-KEDEVTSRRKKREKI 596
Score = 81 (33.6 bits), Expect = 3.2e-12, Sum P(6) = 3.2e-12
Identities = 35/163 (21%), Positives = 69/163 (42%)
Query: 1211 KKKLMLDQLFVNKSGSQKEVEDILRWGTEELFND---SPGINGKD-MGENNTSIEEAVR- 1265
K K+M+ + FV K ++ + + + + L G+ KD + T +++ +R
Sbjct: 1056 KHKVMIYR-FVTKGSVEERITSVAK--KKMLLTHLVVRAGLGAKDGKSMSKTELDDVLRW 1112
Query: 1266 DLEQKHRKRG----GGLGDVYQDKCTEGSTKIVWDENAIARLLDRSNLQSGSTDLAEGDL 1321
E+ ++ G G+ K +IVWD+ A+ LLDR+ + G +
Sbjct: 1113 GTEELFKEEEAPVEGADGEGTSSK-KPNEQEIVWDDAAVDFLLDRNKEEEGQDGEKKEHW 1171
Query: 1322 ENDMLGSVKATEWNEETTEDQAESPVAAVDDASAENSERKEEN 1364
N+ L S K +N + +D + + E +E ++ N
Sbjct: 1172 TNEYLSSFKVATYNTKEADDADDDEDET--EVIKEGTEEQDPN 1212
Score = 76 (31.8 bits), Expect = 1.4e-07, Sum P(5) = 1.4e-07
Identities = 28/107 (26%), Positives = 48/107 (44%)
Query: 530 KVQDESAVSTE-DLGERNDKMVVEDADVSLRDNEGLT-VSEIHITCESTDKDVDVGKKTS 587
KVQ+ + E + E +KM+ A S+ + G+ + E I + T DVD T
Sbjct: 1403 KVQEFEKFNGEWSMPETREKMLATAAQASVSNLPGMIKIKEEPIDIDETPMDVDQSNITK 1462
Query: 588 GSVAKRVQEPAVTESAQVKGKAVSYEFLVKWVGKSNIHNSWIPESQL 634
+ E V E + K + Y+F + G + +H+ WI E ++
Sbjct: 1463 --TEELASEVKVEE--EPKAPRLPYKFNICDGGYTELHSLWINEEKV 1505
Score = 63 (27.2 bits), Expect = 2.2e-147, Sum P(6) = 2.2e-147
Identities = 17/48 (35%), Positives = 24/48 (50%)
Query: 658 DERWKQPQRVISLRSSKDGTREAFVKWTGLPYDECTWEKLDEPALEKY 705
D+ + +P R + R RE FVKW L Y +C W L E ++ Y
Sbjct: 409 DDVFLKPPRKMEPRRE----REFFVKWKYLAYWQCEW--LSETLMDVY 450
Score = 50 (22.7 bits), Expect = 1.7e-141, Sum P(7) = 1.7e-141
Identities = 13/52 (25%), Positives = 24/52 (46%)
Query: 257 SEQNDEVPVEKHEKSSTNGSSGIKFVLAIGASERDRKRKPEVKDEDSQKKLR 308
S+Q E +++HEK G + A+ + KRK ++ + K+ R
Sbjct: 203 SDQEFEALIKQHEKQQDEAEKGKEEARINRAAAKVDKRKAALESARASKRAR 254
Score = 48 (22.0 bits), Expect = 6.0e-153, Sum P(7) = 6.0e-153
Identities = 12/44 (27%), Positives = 21/44 (47%)
Query: 34 GKEENLVTSESPRNTPSAKRRLK---NEINADRSSTKKKGNDGY 74
G++E V +E + P+ + K + + S+KKK N Y
Sbjct: 33 GEDEEEVETEESQGVPTTSEKKKPPPKKKKGGKKSSKKKNNCDY 76
Score = 45 (20.9 bits), Expect = 3.1e-05, Sum P(4) = 3.1e-05
Identities = 14/55 (25%), Positives = 23/55 (41%)
Query: 328 TLSPGTSKLHEKQRTNNDEVSASLCEVDVGTKGLDAQRKDELAEETTDPLDKSDK 382
T+ P L + + +DE E + +A R +A +P+D SDK
Sbjct: 1719 TIQPKFPSLFDCNLSPDDEPID--IEGSISAAVAEASRASSIAATKDEPMDTSDK 1771
Score = 45 (20.9 bits), Expect = 6.3e-05, Sum P(5) = 6.3e-05
Identities = 21/88 (23%), Positives = 41/88 (46%)
Query: 337 HEKQRTNNDEVSASLCEVDVG---TKGLDAQRKDELAE-----ETTDPLDKSDKAGVHVN 388
H ++R NDEV ++ ++ KGL ++DE+ E D L K + ++
Sbjct: 552 HHRERMLNDEVPRNVQKMIAKQREAKGL-GPKEDEVTSRRKKREKIDILKKYEVQPDFIS 610
Query: 389 EIPLCKDIVPFELQQVDRVLGCRVKGDD 416
E ++ P++L+ ++ + C G D
Sbjct: 611 ETG--GNLHPYQLEGINWLRHCWSNGTD 636
Score = 44 (20.5 bits), Expect = 6.0e-153, Sum P(7) = 6.0e-153
Identities = 14/62 (22%), Positives = 26/62 (41%)
Query: 1221 VNKSGSQKEVEDILRWGTEELFNDSPGIN--------GKDMGENNTSIEEAVRDLEQKHR 1272
+ K G K V + + +E + D N G + G +N + + D E++ R
Sbjct: 1230 LQKLGKGKRVRRQVNYASENMGQDWSAQNNQQQEEDDGSEYGSDNGELLQTDEDYEERRR 1289
Query: 1273 KR 1274
+R
Sbjct: 1290 RR 1291
Score = 41 (19.5 bits), Expect = 4.3e-145, Sum P(6) = 4.3e-145
Identities = 10/32 (31%), Positives = 17/32 (53%)
Query: 498 KECKVTKECKGENAIDLLREDDKDSDPVAVNG 529
KE +VT K ID+L++ + D ++ G
Sbjct: 582 KEDEVTSRRKKREKIDILKKYEVQPDFISETG 613
Score = 41 (19.5 bits), Expect = 3.1e-05, Sum P(4) = 3.1e-05
Identities = 13/56 (23%), Positives = 22/56 (39%)
Query: 111 NGKWQCPKCTQK---NDQLKPISNLDSISKRARSKIITIKSQSGVKSSGADKVSQI 163
NG+W P+ +K +SNL + K I ++ V S K ++
Sbjct: 1411 NGEWSMPETREKMLATAAQASVSNLPGMIKIKEEPIDIDETPMDVDQSNITKTEEL 1466
Score = 40 (19.1 bits), Expect = 1.6e-152, Sum P(7) = 1.6e-152
Identities = 8/33 (24%), Positives = 13/33 (39%)
Query: 1334 WNEETTEDQAESPVAAVDDASAENSERKEENAV 1366
W E + E+PV D + + E+ V
Sbjct: 1112 WGTEELFKEEEAPVEGADGEGTSSKKPNEQEIV 1144
Score = 40 (19.1 bits), Expect = 5.5e-145, Sum P(6) = 5.5e-145
Identities = 7/16 (43%), Positives = 10/16 (62%)
Query: 613 EFLVKWVGKSNIHNSW 628
++LVKW S H +W
Sbjct: 518 DYLVKWKELSYEHATW 533
Score = 39 (18.8 bits), Expect = 7.0e-145, Sum P(6) = 7.0e-145
Identities = 9/33 (27%), Positives = 20/33 (60%)
Query: 611 SYE-FLVK-WVGKSNIHNSWIPESQLKVLAKRK 641
+YE ++K W + + N +P + K++AK++
Sbjct: 542 NYEDAIIKYWHHRERMLNDEVPRNVQKMIAKQR 574
Score = 38 (18.4 bits), Expect = 6.0e-153, Sum P(7) = 6.0e-153
Identities = 8/24 (33%), Positives = 12/24 (50%)
Query: 613 EFLVKWVGKSNIHNSWIPESQLKV 636
EF VKW + W+ E+ + V
Sbjct: 426 EFFVKWKYLAYWQCEWLSETLMDV 449
Score = 37 (18.1 bits), Expect = 6.0e-153, Sum P(7) = 6.0e-153
Identities = 8/23 (34%), Positives = 14/23 (60%)
Query: 391 PLCKDIVPFELQQVDRVLGCRVK 413
P C I+P Q+++++L R K
Sbjct: 370 PRC--IIPEPAQRIEKILSWRWK 390
Score = 37 (18.1 bits), Expect = 3.2e-152, Sum P(7) = 3.2e-152
Identities = 14/65 (21%), Positives = 28/65 (43%)
Query: 1209 LAKKKLMLDQLFVNKSGSQKEVEDILRWGT--EELFNDSPGINGKDMGENNTSIEEAVRD 1266
LAK ++ L N + ++RWG ++L S + +D+ + + +A
Sbjct: 1302 LAKVNGQIEVLGFNPRQRKAFYNAVMRWGMPPQDLTQSSWQV--RDLRNKSEKVFKAYSS 1359
Query: 1267 LEQKH 1271
L +H
Sbjct: 1360 LFMRH 1364
Score = 37 (18.1 bits), Expect = 6.3e-05, Sum P(5) = 6.3e-05
Identities = 10/31 (32%), Positives = 17/31 (54%)
Query: 542 LGERNDKMVVEDADVSLRDNE---GLTVSEI 569
+G+R +MV+ + + S D G VS+I
Sbjct: 697 VGDRESRMVIREHEFSFVDGAVRGGPKVSKI 727
>MGI|MGI:1344380 [details] [associations]
symbol:Chd4 "chromodomain helicase DNA binding protein 4"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0001103 "RNA polymerase II repressing
transcription factor binding" evidence=ISO] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=ISO] [GO:0005813 "centrosome" evidence=ISO] [GO:0005856
"cytoskeleton" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0008134
"transcription factor binding" evidence=IPI] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0016568 "chromatin modification"
evidence=IEA] [GO:0016581 "NuRD complex" evidence=ISO;IDA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0016818
"hydrolase activity, acting on acid anhydrides, in
phosphorus-containing anhydrides" evidence=IEA] [GO:0043234
"protein complex" evidence=IDA] [GO:0046872 "metal ion binding"
evidence=IEA] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR002464 InterPro:IPR012957 InterPro:IPR012958
InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271 Pfam:PF00628
Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00298 SMART:SM00490 MGI:MGI:1344380 Pfam:PF00385
GO:GO:0005524 GO:GO:0005737 GO:GO:0005813 GO:GO:0006355
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 GO:GO:0006351
GO:GO:0016568 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 InterPro:IPR019786
PROSITE:PS01359 InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GO:GO:0016581 InterPro:IPR023780 PROSITE:PS00598
GeneTree:ENSGT00560000076896 HOGENOM:HOG000231124
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
HOVERGEN:HBG005326 CTD:1108 KO:K11643 OrthoDB:EOG4WH8JX
ChiTaRS:CHD4 EMBL:BC058578 IPI:IPI00396802 RefSeq:NP_666091.1
UniGene:Mm.333388 ProteinModelPortal:Q6PDQ2 SMR:Q6PDQ2
DIP:DIP-59651N IntAct:Q6PDQ2 STRING:Q6PDQ2 PhosphoSite:Q6PDQ2
PaxDb:Q6PDQ2 PRIDE:Q6PDQ2 Ensembl:ENSMUST00000056889 GeneID:107932
KEGG:mmu:107932 UCSC:uc009dtk.1 NextBio:359735 PMAP-CutDB:Q6PDQ2
Bgee:Q6PDQ2 CleanEx:MM_CHD4 Genevestigator:Q6PDQ2
GermOnline:ENSMUSG00000063870 Uniprot:Q6PDQ2
Length = 1915
Score = 1242 (442.3 bits), Expect = 8.1e-152, Sum P(4) = 8.1e-152
Identities = 274/538 (50%), Positives = 353/538 (65%)
Query: 742 VALTEQPEELK--GGALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLY 799
V QPE L GG L P+Q+E LNWLR W + + ILADEMGLGKTV F+ SLY
Sbjct: 703 VKYERQPEYLDATGGTLHPYQMEGLNWLRFSWAQGTDTILADEMGLGKTVQTAVFLYSLY 762
Query: 800 CEFKAKLPCLVLVPLSTMPNWLAEFALWAPNLNVVEYHGCAKARAIIRQYEWHASD---- 855
E +K P LV PLST+ NW EF +WAP++ VV Y G +RAIIR+ E+ D
Sbjct: 763 KEGHSKGPFLVSAPLSTIINWEREFEMWAPDMYVVTYVGDKDSRAIIRENEFSFEDNAIR 822
Query: 856 ---PDNLNKKTSSYKFNVLLTTYEMILADSSHLRGVPWEVLVVDEGHRXXXXXXXXXXXX 912
+ KK +S KF+VLLT+YE+I D + L + W L+VDE HR
Sbjct: 823 GGKKASRMKKEASVKFHVLLTSYELITIDMAILGSIDWACLIVDEAHRLKNNQSKFFRVL 882
Query: 913 XXXXXQHRVLLTGTPLQNNIGEMYNLLNFLQPASFPSLSSFEEKFNDLTTTQKVEELKKL 972
QH++LLTGTPLQNN+ E+++LLNFL P F +L F E+F D+ ++++L +
Sbjct: 883 NGYSLQHKLLLTGTPLQNNLEELFHLLNFLTPERFHNLEGFLEEFADIAKEDQIKKLHDM 942
Query: 973 VAPHMLRRLKKDAMQNIPPKTERMVPVELSSIQAEYYRAMLTKNYQILRNIGKGVAQQSM 1032
+ PHMLRRLK D +N+P KTE +V VELS +Q +YY+ +LT+N++ L G G Q S+
Sbjct: 943 LGPHMLRRLKADVFKNMPSKTELIVRVELSPMQKKYYKYILTRNFEALNARGGG-NQVSL 1001
Query: 1033 LNIVMQLRKVCNHPYLIP--GTE-PDSGSVEFLHEMRIKASAKLTLLHSMLKVLYKEGHR 1089
LN+VM L+K CNHPYL P E P + + I+AS KL LL MLK L + GHR
Sbjct: 1002 LNVVMDLKKCCNHPYLFPVAAMEAPKMPNGMYDGSALIRASGKLLLLQKMLKNLKEGGHR 1061
Query: 1090 VLIFSQMTKLLDILEDYLNIEFGPKTYERVDGSVSVGDRQAAITRFNQDKSR-FVFLLST 1148
VLIFSQMTK+LD+LED+L E G K YER+DG ++ RQ AI RFN ++ F FLLST
Sbjct: 1062 VLIFSQMTKMLDLLEDFLEHE-GYK-YERIDGGITGNMRQEAIDRFNAPGAQQFCFLLST 1119
Query: 1149 RSCGLGINLATADTVIIYDSDFNPHADIQAMNRAHRIGQSKRLLVYRLVVRASVEERILQ 1208
R+ GLGINLATADTVIIYDSD+NPH DIQA +RAHRIGQ+K++++YR V RASVEERI Q
Sbjct: 1120 RAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQNKKVMIYRFVTRASVEERITQ 1179
Query: 1209 LAKKKLMLDQLFV-----NKSGS--QKEVEDILRWGTEELFNDSPGINGKDMGENNTS 1259
+AKKK+ML L V +K+GS ++E++DIL++GTEELF D G D E S
Sbjct: 1180 VAKKKMMLTHLVVRPGLGSKTGSMSKQELDDILKFGTEELFKDEATDGGGDNKEGEDS 1237
Score = 369 (135.0 bits), Expect = 3.9e-49, Sum P(4) = 3.9e-49
Identities = 133/418 (31%), Positives = 186/418 (44%)
Query: 661 WKQPQRVISLRSSKDGTREAFVKWTGLPYDECTWEKLD----EPALEKYSHLT--DLFVQ 714
W R+++ K G +KW LPYD+ +WE D + L K S+ +L
Sbjct: 614 WMMIHRILNHSVDKKGHVHYLIKWRDLPYDQASWESEDVEIQDYDLFKQSYWNHRELMRG 673
Query: 715 FERQTLKK--DASEDELPRGKGDCQQSEIVALTEQPEELK--GGALFPHQLEALNWLRKC 770
E + KK +L R V QPE L GG L P+Q+E LNWLR
Sbjct: 674 EEGRPGKKLKKVKLRKLERPPETPTVDPTVKYERQPEYLDATGGTLHPYQMEGLNWLRFS 733
Query: 771 WHKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLSTMPNWLAEFALWAPN 830
W + + ILADEMGLGKTV F+ SLY E +K P LV PLST+ NW EF +WAP+
Sbjct: 734 WAQGTDTILADEMGLGKTVQTAVFLYSLYKEGHSKGPFLVSAPLSTIINWEREFEMWAPD 793
Query: 831 LNVVEYHGCAKARAIIRQYEWHASDPDNL---NKKTSSYKFNVLLTTYEMILADSSHLRG 887
+ VV Y G +RAIIR+ E+ S DN KK S K + + +L S L
Sbjct: 794 MYVVTYVGDKDSRAIIRENEF--SFEDNAIRGGKKASRMKKEASVKFH--VLLTSYEL-- 847
Query: 888 VPWEVLVVDEGHRXXXXXXXXXXXXXXXXXQHRVLLTGTPLQNNI---GE--MYNLLNFL 942
+ ++ ++ RVL G LQ+ + G NL
Sbjct: 848 ITIDMAILGSIDWACLIVDEAHRLKNNQSKFFRVL-NGYSLQHKLLLTGTPLQNNLEELF 906
Query: 943 QPASFPSLSSFE--EKF-NDLTTTQKVEELKKLVAPHMLRRLKKDAMQNIPPKTERMVPV 999
+F + F E F + K +++KKL H + L ++ + + +P
Sbjct: 907 HLLNFLTPERFHNLEGFLEEFADIAKEDQIKKL---HDM--LGPHMLRRLKADVFKNMPS 961
Query: 1000 ELSSIQAEYYRAMLTKNYQIL--RNI----GKGVAQQ-SMLNIVMQLRKVCNHPYLIP 1050
+ I M K Y+ + RN +G Q S+LN+VM L+K CNHPYL P
Sbjct: 962 KTELIVRVELSPMQKKYYKYILTRNFEALNARGGGNQVSLLNVVMDLKKCCNHPYLFP 1019
Score = 191 (72.3 bits), Expect = 8.1e-152, Sum P(4) = 8.1e-152
Identities = 29/50 (58%), Positives = 38/50 (76%)
Query: 72 DGYYYE-CVICDLGGNLLCCDSCPRTYHLQCLDPPLKRIPNGKWQCPKCT 120
D ++ E C +C GG LLCCD+CP +YH+ CL+PPL IPNG+W CP+CT
Sbjct: 438 DDHHMEFCRVCKDGGELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCT 487
Score = 179 (68.1 bits), Expect = 1.5e-150, Sum P(4) = 1.5e-150
Identities = 30/85 (35%), Positives = 47/85 (55%)
Query: 41 TSESPRNTPSAKRRLKNEINADRSSTKKKGNDGYYYECVICDLGGNLLCCDSCPRTYHLQ 100
+S S + +AK++ K E + + Y C +C GG ++ CD+CPR YH+
Sbjct: 332 SSRSRKKLRTAKKKKKGEEEVTAVDGYETDHQDY---CEVCQQGGEIILCDTCPRAYHMV 388
Query: 101 CLDPPLKRIPNGKWQCPKCTQKNDQ 125
CLDP +++ P GKW CP C ++ Q
Sbjct: 389 CLDPDMEKAPEGKWSCPHCEKEGIQ 413
Score = 81 (33.6 bits), Expect = 3.9e-49, Sum P(4) = 3.9e-49
Identities = 36/140 (25%), Positives = 70/140 (50%)
Query: 1212 KKLMLDQLFVNKSGSQKEVEDILRWGTEELFND---SPGINGKDMGENNTSIEEAVR-DL 1267
KK+M+ + FV ++ ++ + + + + + PG+ K + +++ ++
Sbjct: 1160 KKVMIYR-FVTRASVEERITQVAK--KKMMLTHLVVRPGLGSKTGSMSKQELDDILKFGT 1216
Query: 1268 EQ--KHRKRGGGLGDVYQDKCTEGSTKIVWDENAIARLLDRSNLQSGSTDLAEGDLENDM 1325
E+ K GG GD +K E S+ I +D+ AI RLLDR+ ++ T+L +G N+
Sbjct: 1217 EELFKDEATDGG-GD---NKEGEDSSVIHYDDKAIERLLDRNQDETEDTEL-QG--MNEY 1269
Query: 1326 LGSVKATEW---NEETTEDQ 1342
L S K ++ EE E++
Sbjct: 1270 LSSFKVAQYVVREEEMGEEE 1289
Score = 79 (32.9 bits), Expect = 8.1e-152, Sum P(4) = 8.1e-152
Identities = 17/53 (32%), Positives = 27/53 (50%)
Query: 596 EPAVTESAQVKGKAVSYEFLVKWVGKSNIHNSWIPESQLKVLAKRKLENYKAK 648
+P ++G+ +F VKW G S H SW+ E QL++ + NY+ K
Sbjct: 519 DPNTPSPKPLEGRP-ERQFFVKWQGMSYWHCSWVSELQLELHCQVMFRNYQRK 570
Score = 75 (31.5 bits), Expect = 2.1e-151, Sum P(4) = 2.1e-151
Identities = 24/64 (37%), Positives = 33/64 (51%)
Query: 678 REAFVKWTGLPYDECTWEKLDEPALEKYSHLTDLFVQFERQTLKKDASEDELPRGK--GD 735
R+ FVKW G+ Y C+W + E LE H +F ++R K D DE P G GD
Sbjct: 534 RQFFVKWQGMSYWHCSW--VSELQLEL--HCQVMFRNYQR---KNDM--DEPPSGDFGGD 584
Query: 736 CQQS 739
++S
Sbjct: 585 EEKS 588
Score = 58 (25.5 bits), Expect = 1.8e-10, Sum P(2) = 1.8e-10
Identities = 43/199 (21%), Positives = 78/199 (39%)
Query: 111 NGKWQCPKCTQKNDQLKPISNLDSISKRARSKIITIKSQSGVKSS--GADKVSQIFGNSI 168
NG+W P+ + + K +S S S + + +Q + A+ +I NS
Sbjct: 1506 NGRWSMPELAEVEEN-KKMSQPGSPSPKTPTPSTPGDTQPNTPAPVPPAEDGIKIEENS- 1563
Query: 169 LARKRSNKGKSVLALGVKSLEKSLDSSQVDVSCSTKPENTSAGVPVEGSSSCPNDDDEKQ 228
L + S +G+ VKS + + V C+ P A P +++ P DD +
Sbjct: 1564 LKEEESTEGEKE----VKST-----APEATVECAQPPAPAPATAPA--TATAPEDD---K 1609
Query: 229 LNASPTDSLADTKFHPAEEVLPHSQVTKSEQNDEVPVEKHEKSSTNGSSGIKFVLAIGAS 288
A P + + K AE + ++E VEK E+ S + I
Sbjct: 1610 APAEPPEG--EEKVEKAEVKERTEEPMETEAKGTTEVEKVEEKSAVDLTPIVVEDKEEKK 1667
Query: 289 ERDRKRKPEVKDEDSQKKL 307
E + K+ +++ ++ K L
Sbjct: 1668 EEEEKKDVMLQNGETPKDL 1686
Score = 56 (24.8 bits), Expect = 2.9e-10, Sum P(2) = 2.9e-10
Identities = 33/155 (21%), Positives = 59/155 (38%)
Query: 517 EDDK-DSDPVAVNGKVQD-ESAVSTEDLGERNDKMVVEDADVSLRDNEGLTVSEIHITCE 574
EDDK ++P KV+ E TE+ E K E V + LT I E
Sbjct: 1606 EDDKAPAEPPEGEEKVEKAEVKERTEEPMETEAKGTTEVEKVEEKSAVDLTP----IVVE 1661
Query: 575 STDKDVDVGKKTSGSVAKRVQEPAVTESAQVKGKAVSYEFLVKWVGKSNIHNSWIPESQL 634
++ + +K + +++ Q K + F + G + +H+ W E +
Sbjct: 1662 DKEEKKEEEEKKDVMLQNGETPKDLSDEKQKKNSKQRFMFNIADGGFTELHSLWQNEERA 1721
Query: 635 KVLAKRKLENYKAKYG----TTVINICDERWKQPQ 665
+ K+ E + ++ +IN RW+ Q
Sbjct: 1722 ATVTKKTYEIWHRRHDYWLLAGIINHGYARWQDIQ 1756
Score = 55 (24.4 bits), Expect = 4.6e-13, Sum P(4) = 4.6e-13
Identities = 25/112 (22%), Positives = 52/112 (46%)
Query: 930 NNIGEMYNLLNFLQPASFPSLSSFEEKFNDLTTTQKVEE-LKKL-VAPHMLRRLKKDAMQ 987
N GE +++++ A L +++ D T Q + E L VA +++R + +
Sbjct: 1231 NKEGEDSSVIHYDDKAIERLLDRNQDETED-TELQGMNEYLSSFKVAQYVVREEEMGEEE 1289
Query: 988 NIPPKTERMVPVELSSIQAEYYRAMLTKNYQ-----ILRNIGKGVAQQSMLN 1034
+ ER + + S+ +Y+ +L +Y+ + RN+GKG + +N
Sbjct: 1290 EV----EREIIKQEESVDPDYWEKLLRHHYEQQQEDLARNLGKGKRIRKQVN 1337
Score = 49 (22.3 bits), Expect = 8.1e-152, Sum P(4) = 8.1e-152
Identities = 11/40 (27%), Positives = 24/40 (60%)
Query: 1323 NDMLGSVKATEWNEETTEDQAESPVAAVDDASAENSERKE 1362
ND GS + +W ++ +++Q++ VA+ ++ + ER E
Sbjct: 1339 ND--GSQEDRDWQDDQSDNQSDYSVAS-EEGDEDFDERSE 1375
Score = 46 (21.3 bits), Expect = 9.0e-139, Sum P(5) = 9.0e-139
Identities = 27/134 (20%), Positives = 50/134 (37%)
Query: 216 GSSS-CPNDDDEKQLNASPTDSLADTKFHPAEEVLPHSQVTKSEQNDEVPVEKHEKSSTN 274
GS S C +E+ ++A +SL HP E P ++++E ++ +K K +
Sbjct: 6 GSPSPCSAGSEEEDMDALLNNSLPPP--HPENEEDPDEDLSEAE-TPKLKKKKKPKKPRD 62
Query: 275 GS--SGIKFVLAIGASERDRKRKPEVKDEDSQKKLRVDXXXXXXXXXXXXXXXIGTLSPG 332
+ +G S + PE +E+ + LR D +G
Sbjct: 63 PKIPKSKRQKKELGDSSGEG---PEFVEEEEEVALRSDSEGSDYTPGKKKKKKLGPKKEK 119
Query: 333 TSKLHEKQRTNNDE 346
SK K+ ++
Sbjct: 120 KSKSKRKEEEEEED 133
Score = 45 (20.9 bits), Expect = 1.2e-138, Sum P(5) = 1.2e-138
Identities = 17/78 (21%), Positives = 32/78 (41%)
Query: 201 CSTKPENTSAGVPVEGSSSCPNDDDEKQLNASPTDSLADTKFHPAEEVLPHSQVTKSEQN 260
CS E + S P+ ++E+ P + L++ + P L + K ++
Sbjct: 11 CSAGSEEEDMDALLNNSLPPPHPENEED----PDEDLSEAET-PK---LKKKKKPKKPRD 62
Query: 261 DEVPVEKHEKSSTNGSSG 278
++P K +K SSG
Sbjct: 63 PKIPKSKRQKKELGDSSG 80
Score = 44 (20.5 bits), Expect = 7.4e-12, Sum P(3) = 7.4e-12
Identities = 9/28 (32%), Positives = 16/28 (57%)
Query: 723 DASEDELPRGKGDCQQSEIVALTEQPEE 750
D + E P G+ +++E+ TE+P E
Sbjct: 1608 DKAPAEPPEGEEKVEKAEVKERTEEPME 1635
Score = 43 (20.2 bits), Expect = 6.3e-09, Sum P(2) = 6.3e-09
Identities = 12/55 (21%), Positives = 29/55 (52%)
Query: 328 TLSPGTSKLHEKQRTNNDEVSASLCEVDVGTKGLDAQRKDELAEETTDPLDKSDK 382
T + GT+++ + + + +++ + E D K + ++KD + + P D SD+
Sbjct: 1636 TEAKGTTEVEKVEEKSAVDLTPIVVE-DKEEKKEEEEKKDVMLQNGETPKDLSDE 1689
Score = 41 (19.5 bits), Expect = 1.0e-08, Sum P(2) = 1.0e-08
Identities = 8/32 (25%), Positives = 16/32 (50%)
Query: 359 KGLDAQRKDELAEETTDPLDKSDKAGVHVNEI 390
+G + K E+ E T +P++ K V ++
Sbjct: 1616 EGEEKVEKAEVKERTEEPMETEAKGTTEVEKV 1647
Score = 40 (19.1 bits), Expect = 5.9e-136, Sum P(4) = 5.9e-136
Identities = 15/54 (27%), Positives = 25/54 (46%)
Query: 258 EQNDEVPVEKHEKSSTNGSSGIKFVLAIGA-----SERDRKRKPEVKDEDSQKK 306
E+ +EV + + S + + G K +G S+ RK + E +DED K
Sbjct: 87 EEEEEVALRSDSEGS-DYTPGKKKKKKLGPKKEKKSKSKRKEEEEEEDEDDDSK 139
Score = 40 (19.1 bits), Expect = 1.3e-08, Sum P(2) = 1.3e-08
Identities = 16/83 (19%), Positives = 31/83 (37%)
Query: 507 KGENAIDLLREDDKDSDPVAVNGKVQDESAVSTEDLGERNDKMVVEDADVSLRDNEGLTV 566
+GE ++ ++ +P+ K E E +VVED + + E
Sbjct: 1616 EGEEKVEKAEVKERTEEPMETEAKGTTEVEKVEEKSAVDLTPIVVEDKEEKKEEEEK--- 1672
Query: 567 SEIHITCESTDKDVDVGKKTSGS 589
++ + T KD+ K+ S
Sbjct: 1673 KDVMLQNGETPKDLSDEKQKKNS 1695
Score = 37 (18.1 bits), Expect = 9.0e-139, Sum P(5) = 9.0e-139
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 363 AQRKDELAEETTDPLDKSDKAGVHVNE 389
++RK+E EE D K K+ + E
Sbjct: 123 SKRKEEEEEEDEDDDSKEPKSSAQLLE 149
>ZFIN|ZDB-GENE-030131-4532 [details] [associations]
symbol:chd4b "chromodomain helicase DNA binding
protein 4b" species:7955 "Danio rerio" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0016818 "hydrolase activity, acting on acid
anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0046872 "metal
ion binding" evidence=IEA] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR002464 InterPro:IPR012957 InterPro:IPR012958
InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271 Pfam:PF00628
Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 ZFIN:ZDB-GENE-030131-4532
GO:GO:0005524 GO:GO:0005634 GO:GO:0006355 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 InterPro:IPR019786
PROSITE:PS01359 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR023780 GeneTree:ENSGT00560000076896 InterPro:IPR009462
InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465 EMBL:BX511250
IPI:IPI00931161 RefSeq:XP_685699.4 UniGene:Dr.75373
Ensembl:ENSDART00000092902 Ensembl:ENSDART00000148389 GeneID:560622
KEGG:dre:560622 CTD:560622 NextBio:20883532 Uniprot:F1RBT2
Length = 1953
Score = 1242 (442.3 bits), Expect = 1.5e-151, Sum P(4) = 1.5e-151
Identities = 274/539 (50%), Positives = 359/539 (66%)
Query: 742 VALTEQPEELK--GGALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLY 799
+ QP+ L GG L P+QLE LNWLR W + + ILADEMGLGKTV F+ SLY
Sbjct: 720 IKFDRQPDYLDSTGGTLHPYQLEGLNWLRFSWAQGTDTILADEMGLGKTVQTAVFLYSLY 779
Query: 800 CEFKAKLPCLVLVPLSTMPNWLAEFALWAPNLNVVEYHGCAKARAIIRQYEWHASD---- 855
E +K P LV PLST+ NW EF +WAP++ VV Y G +RA+IR+ E+ D
Sbjct: 780 KEGHSKGPFLVSAPLSTIINWEREFEMWAPDMYVVTYVGDKDSRAVIRENEFTFEDNAIR 839
Query: 856 ---PDNLNKKTSSYKFNVLLTTYEMILADSSHLRGVPWEVLVVDEGHRXXXXXXXXXXXX 912
+ KK ++ KF+VLLT+YE+I D + L + W LVVDE HR
Sbjct: 840 GGKKASKMKKEAAVKFHVLLTSYELITIDQAILGSIDWACLVVDEAHRLKNNQSKFFRVL 899
Query: 913 XXXXXQHRVLLTGTPLQNNIGEMYNLLNFLQPASFPSLSSFEEKFNDLTTTQKVEELKKL 972
QH++LLTGTPLQNN+ E+++LLNFL P F +L F E+F D+ ++++L +
Sbjct: 900 NNYPLQHKLLLTGTPLQNNLEELFHLLNFLTPERFNNLEGFLEEFADIAKEDQIKKLHDM 959
Query: 973 VAPHMLRRLKKDAMQNIPPKTERMVPVELSSIQAEYYRAMLTKNYQILRNIGKGVAQQSM 1032
+ PHMLRRLK D +++P KTE +V VELS +Q +YY+ +LT+N++ L G G Q S+
Sbjct: 960 LGPHMLRRLKADVFKHMPSKTELIVRVELSPMQKKYYKYILTRNFEALNTRGGG-NQVSL 1018
Query: 1033 LNIVMQLRKVCNHPYLIP--GTE-PDSGSVEFLHEMRIKASAKLTLLHSMLKVLYKEGHR 1089
LN+VM L+K CNHPYL P TE P + + KAS KL LL MLK L + GHR
Sbjct: 1019 LNVVMDLKKCCNHPYLFPTAATEAPKMPNGMYDGSALTKASGKLMLLFKMLKKLKEGGHR 1078
Query: 1090 VLIFSQMTKLLDILEDYLNIEFGPKTYERVDGSVSVGDRQAAITRFNQDKS-RFVFLLST 1148
VLIFSQMTK+LD+LED+L E G K YER+DG V+ G RQ AI RFN + +FVFLLST
Sbjct: 1079 VLIFSQMTKMLDLLEDFLENE-GYK-YERIDGGVTGGMRQEAIDRFNAPGAPQFVFLLST 1136
Query: 1149 RSCGLGINLATADTVIIYDSDFNPHADIQAMNRAHRIGQSKRLLVYRLVVRASVEERILQ 1208
R+ GLGINLATADTVIIYDSD+NPH DIQA +RAHRIGQ+K++++YR V +ASVEERI Q
Sbjct: 1137 RAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQNKKVMIYRFVTKASVEERITQ 1196
Query: 1209 LAKKKLMLDQLFV-----NKSGS--QKEVEDILRWGTEELFNDSPGINGKDMGENNTSI 1260
+AKKK+ML L V +K+GS ++E++DIL++GTE+LF D G G D E ++S+
Sbjct: 1197 VAKKKMMLTHLVVRPGLGSKAGSMSKQELDDILKFGTEQLFKDELG-EG-DNKEEDSSV 1253
Score = 381 (139.2 bits), Expect = 4.5e-49, Sum P(5) = 4.5e-49
Identities = 134/428 (31%), Positives = 189/428 (44%)
Query: 648 KYGTTVINICDERWKQPQRVISLRSSKDGTREAFVKWTGLPYDECTWEK--LDEPALEKY 705
KYG + I W R+++ K +KW LPYD+ TWE +D P E Y
Sbjct: 621 KYGRFGVKI---EWLFIHRILNHSVDKKNNVHYLIKWRDLPYDQSTWESEDMDVPDFETY 677
Query: 706 S-HL---TDLFVQFERQTLKK--DASEDELPRGKGDCQQSEIVALTEQPEELK--GGALF 757
H +L + E + KK + R + + QP+ L GG L
Sbjct: 678 KQHYWNHRELMLGEEGRPGKKMKKVKVRKTERPPANPVVDPTIKFDRQPDYLDSTGGTLH 737
Query: 758 PHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLSTM 817
P+QLE LNWLR W + + ILADEMGLGKTV F+ SLY E +K P LV PLST+
Sbjct: 738 PYQLEGLNWLRFSWAQGTDTILADEMGLGKTVQTAVFLYSLYKEGHSKGPFLVSAPLSTI 797
Query: 818 PNWLAEFALWAPNLNVVEYHGCAKARAIIRQYEWHASDPD-NLNKKTSSYKFNVLLTTYE 876
NW EF +WAP++ VV Y G +RA+IR+ E+ D KK S K + +
Sbjct: 798 INWEREFEMWAPDMYVVTYVGDKDSRAVIRENEFTFEDNAIRGGKKASKMKKEAAVKFH- 856
Query: 877 MILADSSHLRGVPWEVL-VVDEGHRXXXXXXXXXXXXXXXXXQHRVLLTGTPLQNNIGEM 935
+L S L + +L +D RVL PLQ+ +
Sbjct: 857 -VLLTSYELITIDQAILGSIDWACLVVDEAHRLKNNQSKFF---RVL-NNYPLQHKLLLT 911
Query: 936 YN-LLNFLQPASFPSLSSFE-EKFNDLTTTQKVEELKKLVAPHMLRRLKK----DAMQNI 989
L N L+ F L+ E+FN+L +EE + +++L ++ +
Sbjct: 912 GTPLQNNLEEL-FHLLNFLTPERFNNLEGF--LEEFADIAKEDQIKKLHDMLGPHMLRRL 968
Query: 990 PPKTERMVPVELSSIQAEYYRAMLTKNYQIL--RNIGK-----GVAQQSMLNIVMQLRKV 1042
+ +P + I M K Y+ + RN G Q S+LN+VM L+K
Sbjct: 969 KADVFKHMPSKTELIVRVELSPMQKKYYKYILTRNFEALNTRGGGNQVSLLNVVMDLKKC 1028
Query: 1043 CNHPYLIP 1050
CNHPYL P
Sbjct: 1029 CNHPYLFP 1036
Score = 185 (70.2 bits), Expect = 1.5e-151, Sum P(4) = 1.5e-151
Identities = 29/49 (59%), Positives = 37/49 (75%)
Query: 72 DGYYYE-CVICDLGGNLLCCDSCPRTYHLQCLDPPLKRIPNGKWQCPKC 119
D ++ E C +C GG LLCCD+CP +YHL CL+PPL IPNG+W CP+C
Sbjct: 453 DDHHMEFCRVCKDGGELLCCDTCPSSYHLHCLNPPLPDIPNGEWICPRC 501
Score = 181 (68.8 bits), Expect = 3.9e-151, Sum P(4) = 3.9e-151
Identities = 35/83 (42%), Positives = 47/83 (56%)
Query: 50 SAKRRLKNEINADRSSTKKKGN---DGYYYE----CVICDLGGNLLCCDSCPRTYHLQCL 102
S R KN+ A S KKK + DGY + C +C GG ++ CD+CPR YH+ CL
Sbjct: 344 SRSSRSKNK-KAKSSKKKKKMDEDADGYETDHQDYCEVCQQGGEIILCDTCPRAYHMVCL 402
Query: 103 DPPLKRIPNGKWQCPKCTQKNDQ 125
DP ++R P G W CP C ++ Q
Sbjct: 403 DPDMERAPEGTWSCPHCEKEGIQ 425
Score = 82 (33.9 bits), Expect = 1.5e-151, Sum P(4) = 1.5e-151
Identities = 16/36 (44%), Positives = 21/36 (58%)
Query: 613 EFLVKWVGKSNIHNSWIPESQLKVLAKRKLENYKAK 648
EF VKW KS H SW+ E QL++ + NY+ K
Sbjct: 550 EFFVKWCNKSYWHCSWVQELQLELNCQVMFRNYQRK 585
Score = 77 (32.2 bits), Expect = 4.5e-49, Sum P(5) = 4.5e-49
Identities = 35/140 (25%), Positives = 66/140 (47%)
Query: 1212 KKLMLDQLFVNKSGSQKEVEDILRWGTEELFND---SPGINGKDMGENNTSIEEAVR-DL 1267
KK+M+ + FV K+ ++ + + + + + PG+ K + +++ ++
Sbjct: 1177 KKVMIYR-FVTKASVEERITQVAK--KKMMLTHLVVRPGLGSKAGSMSKQELDDILKFGT 1233
Query: 1268 EQKHRKRGGGLGDVYQDKCTEGSTKIVWDENAIARLLDRSNLQSGSTDLAEGDLENDMLG 1327
EQ + LG+ D E S+ I +D+ AI RLLDR+ + T+L N+ L
Sbjct: 1234 EQLFKDE---LGE--GDNKEEDSSVIHYDDKAIDRLLDRNQDATEDTELQS---MNEYLS 1285
Query: 1328 SVKATEWNEETTEDQAESPV 1347
S K ++ + ED+ E V
Sbjct: 1286 SFKVAQYVVKD-EDEEEEDV 1304
Score = 62 (26.9 bits), Expect = 1.9e-149, Sum P(4) = 1.9e-149
Identities = 19/62 (30%), Positives = 31/62 (50%)
Query: 678 REAFVKWTGLPYDECTWEKLDEPALEKYSHLTDLFVQFERQTLKKDASEDELPRGKGDCQ 737
RE FVKW Y C+W + E LE + +F ++R+T ++ E+ +GD
Sbjct: 549 REFFVKWCNKSYWHCSW--VQELQLELNCQV--MFRNYQRKTDMEEPPNLEMG-AEGDED 603
Query: 738 QS 739
+S
Sbjct: 604 KS 605
Score = 62 (26.9 bits), Expect = 8.7e-09, Sum P(3) = 8.7e-09
Identities = 37/163 (22%), Positives = 61/163 (37%)
Query: 495 SVTKECKVTKECKGENAIDL-LREDDKDSDPV-AVNGKVQDESAVSTE--DLGERNDKMV 550
S KE K KE + + D RE++KD + + K S V + D D
Sbjct: 1615 SAKKEEKTDKESEASSEKDGGSRENEKDGEKEKSAESKENMSSDVKADGSDATNSGDSTK 1674
Query: 551 V-EDADVSLRDNEGLTVSEIHITCESTD-KDVDVGKKTSGSVAKRVQEPAVTESAQVKGK 608
E++ D + + + E K D K +G AK S + K K
Sbjct: 1675 TKEESSEEKMDTSPASDEKKELKDEKDGVKPEDSAKLQNGENAKETSGGGDGVSEEKK-K 1733
Query: 609 AVSYEFLVKWV--GKSNIHNSWIPESQLKVLAKRKLENYKAKY 649
AV F+ G + +H+ W E + + K+ E + ++
Sbjct: 1734 AVKQRFMFNIADGGFTELHSLWQNEERAATVTKKTYEIWHRRH 1776
Score = 61 (26.5 bits), Expect = 1.6e-138, Sum P(4) = 1.6e-138
Identities = 20/82 (24%), Positives = 42/82 (51%)
Query: 227 KQLNASPTDSLADTKFHPAEEVLPHSQVTKSEQNDEVPVEKHEKSSTN------GSSGIK 280
+++ S + + + EE ++SE +D P +K +K S++ GS+G K
Sbjct: 53 EEIAVSSPEVMEAIRMAEGEEEEDRVMRSESEGSDYAPSKKKKKRSSSSKDRKKGSAGEK 112
Query: 281 FVLAIGASERDRKRKPEVKDED 302
A G+ + ++++PE ++ED
Sbjct: 113 ---AGGSGGKSKRKEPEPEEED 131
Score = 59 (25.8 bits), Expect = 5.5e-09, Sum P(3) = 5.5e-09
Identities = 30/125 (24%), Positives = 54/125 (43%)
Query: 185 VKSLEKSLDSSQVDVSCSTKPENTSAGVPVEGSSSCPNDDDEKQLNASPTDSLADTKFHP 244
+K LE+S ++ + + P+ S G P + + P +D S T+ + + +
Sbjct: 1533 MKELEESKRAAAI--AAGEDPKTPSTGTPADTQPNTPAPED-----LSKTEDIKELE--E 1583
Query: 245 AEEVLPHSQVTKSEQNDEV---PVEKHEKSSTNGSSGIKFVLAIGAS-ERDRKRKPEVKD 300
E +V S Q DE+ P ++ EKS ++ K AS E+D + KD
Sbjct: 1584 KTEGDGEKEVKGSRQEDEIIEIP-DEGEKSPSSAKKEEKTDKESEASSEKDGGSRENEKD 1642
Query: 301 EDSQK 305
+ +K
Sbjct: 1643 GEKEK 1647
Score = 55 (24.4 bits), Expect = 3.5e-08, Sum P(3) = 3.5e-08
Identities = 27/122 (22%), Positives = 46/122 (37%)
Query: 186 KSLEKSLDSSQVDVSCSTKPENTSAGVPVEGSSSCPNDDDEKQLNASPTDSLADTKFHPA 245
+ L K+ D +++ E G E D+ EK SP+ + + K
Sbjct: 1570 EDLSKTEDIKELEEKTEGDGEKEVKGSRQEDEIIEIPDEGEK----SPSSAKKEEKTDKE 1625
Query: 246 EEVLPHSQVTKSEQNDEVPVEKHEKSSTNGSSGIKFVLAIGASERDRKRKPEVKDEDSQK 305
E E + EK +S N SS +K A G+ + + K+E S++
Sbjct: 1626 SEASSEKDGGSRENEKDGEKEKSAESKENMSSDVK---ADGSDATNSGDSTKTKEESSEE 1682
Query: 306 KL 307
K+
Sbjct: 1683 KM 1684
Score = 54 (24.1 bits), Expect = 5.5e-08, Sum P(3) = 5.5e-08
Identities = 28/109 (25%), Positives = 45/109 (41%)
Query: 504 KECKGENAIDLLRE--DDKDSDPVAVNG--KVQDESAVSTE-DLGERNDKMVVEDADVSL 558
KE KG D + E D+ + P + K ES S+E D G R ++ E + S
Sbjct: 1591 KEVKGSRQEDEIIEIPDEGEKSPSSAKKEEKTDKESEASSEKDGGSRENEKDGEK-EKSA 1649
Query: 559 RDNEGLTVSEIHIT-CESTDKDVDVGKKTSGSVAKRVQEPAVTESAQVK 606
E ++ S++ ++T+ K S K PA E ++K
Sbjct: 1650 ESKENMS-SDVKADGSDATNSGDSTKTKEESSEEKMDTSPASDEKKELK 1697
Score = 52 (23.4 bits), Expect = 1.5e-151, Sum P(4) = 1.5e-151
Identities = 18/58 (31%), Positives = 26/58 (44%)
Query: 1318 EGDLENDMLGSVKATEWNEETTEDQAESPVAAVDDASAENSERKEENAVTGIEENEWD 1375
EGD E ++ GS + E E E + A ++ + + SE E G ENE D
Sbjct: 1586 EGDGEKEVKGSRQEDEIIEIPDEGEKSPSSAKKEEKTDKESEASSEKD-GGSRENEKD 1642
Score = 46 (21.3 bits), Expect = 2.8e-07, Sum P(3) = 2.8e-07
Identities = 35/161 (21%), Positives = 56/161 (34%)
Query: 223 DDDEKQLNASPTDSLADTKFHPAEEVLPHSQVTKS-EQNDEVPVEKHEKSSTNGSSGIKF 281
+D + +P D+ +T PA E L ++ K E+ E EK K S I+
Sbjct: 1549 EDPKTPSTGTPADTQPNT---PAPEDLSKTEDIKELEEKTEGDGEKEVKGSRQEDEIIE- 1604
Query: 282 VLAIGASERDRKRKPEVKDEDSQKKLRVDXXXXXXXXXXXXXXXIGTLSPGTSKLHEKQR 341
+ G +K E D++S+ D K E +
Sbjct: 1605 IPDEGEKSPSSAKKEEKTDKESEASSEKDGGSRENEKDGEK-----------EKSAESKE 1653
Query: 342 TNNDEVSASLCEVDVGTKGLDAQRKDELAEETTDPLDKSDK 382
+ +V A D G + K+E +EE D SD+
Sbjct: 1654 NMSSDVKAD--GSDATNSGDSTKTKEESSEEKMDTSPASDE 1692
Score = 45 (20.9 bits), Expect = 5.1e-11, Sum P(4) = 5.1e-11
Identities = 20/71 (28%), Positives = 33/71 (46%)
Query: 685 TGLPYDECTWEKLDEPALEKYSHLTDLFVQFERQTLKKDASEDELPRGKGDCQQSEIVAL 744
TG P D + + PA E S D+ + E +T + E E+ KG Q+ EI+ +
Sbjct: 1556 TGTPADT----QPNTPAPEDLSKTEDI-KELEEKT--EGDGEKEV---KGSRQEDEIIEI 1605
Query: 745 TEQPEELKGGA 755
++ E+ A
Sbjct: 1606 PDEGEKSPSSA 1616
Score = 43 (20.2 bits), Expect = 2.1e-06, Sum P(4) = 2.1e-06
Identities = 23/93 (24%), Positives = 38/93 (40%)
Query: 518 DDKDSDPVAVN-GKVQD--ESAVSTEDLGERNDK-MVVEDADVSLRDNEGLTVSEIHITC 573
D + + P + K +D E TE GE+ K ED + + D EG
Sbjct: 1561 DTQPNTPAPEDLSKTEDIKELEEKTEGDGEKEVKGSRQEDEIIEIPD-EGEKSPSSAKKE 1619
Query: 574 ESTDKDVDVGKKTSGSVAKRVQEPAVTESAQVK 606
E TDK+ + + G + ++ +SA+ K
Sbjct: 1620 EKTDKESEASSEKDGGSRENEKDGEKEKSAESK 1652
Score = 42 (19.8 bits), Expect = 1.7e-150, Sum P(4) = 1.7e-150
Identities = 7/30 (23%), Positives = 19/30 (63%)
Query: 1333 EWNEETTEDQAESPVAAVDDASAENSERKE 1362
+W ++ +++Q++ VA+ ++ + ER E
Sbjct: 1364 DWQDDQSDNQSDYSVAS-EEGDEDFDERSE 1392
Score = 42 (19.8 bits), Expect = 1.7e-150, Sum P(4) = 1.7e-150
Identities = 16/52 (30%), Positives = 29/52 (55%)
Query: 1313 STDL-AEGDLENDMLGSVKATEWNEETTEDQAESPVAAVDDASAENSERKEE 1363
S+D+ A+G +D S +T+ EE++E++ ++ AS E E K+E
Sbjct: 1656 SSDVKADG---SDATNSGDSTKTKEESSEEKMDT-----SPASDEKKELKDE 1699
Score = 42 (19.8 bits), Expect = 2.6e-06, Sum P(4) = 2.6e-06
Identities = 19/86 (22%), Positives = 35/86 (40%)
Query: 507 KGENAIDLLREDDKDSDPVAVNGKVQDESAVSTEDLGERNDKMVVEDADVSLRDNEGLTV 566
K E+ +L + + D + V G Q++ + D GE++ ++ D E
Sbjct: 1574 KTEDIKELEEKTEGDGEK-EVKGSRQEDEIIEIPDEGEKSPSSAKKEEKT---DKESEAS 1629
Query: 567 SEIHITCESTDKDVDVGKKTSGSVAK 592
SE +KD G+K + +K
Sbjct: 1630 SEKDGGSRENEKD---GEKEKSAESK 1652
Score = 40 (19.1 bits), Expect = 2.5e-136, Sum P(4) = 2.5e-136
Identities = 9/15 (60%), Positives = 9/15 (60%)
Query: 93 CPRTYHLQCLDPPLK 107
CPR CL PPLK
Sbjct: 498 CPR-----CLSPPLK 507
Score = 38 (18.4 bits), Expect = 4.1e-136, Sum P(4) = 4.1e-136
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 286 GASERDRKRKPEVKDEDSQKKLR 308
G + R RK KP K +D + K +
Sbjct: 283 GPNAR-RKTKPTPKPQDKKSKAK 304
Score = 38 (18.4 bits), Expect = 1.4e-08, Sum P(3) = 1.4e-08
Identities = 19/87 (21%), Positives = 41/87 (47%)
Query: 417 TSSSCHISATATDDRHSDDFLVSENHNKILEENLACDTDLDA-------EVTENLAELSP 469
T H S A + R S+ ++E+H + +E+++ + +A ++ E L+++
Sbjct: 1851 TEDPSHPSM-ALNTRFSEVECLAESHQHLSKESMSGNKPANAVLHKVLKQLEELLSDMKA 1909
Query: 470 NVIRSSDEECMKNDIGVDRIQVYRRSV 496
+V R + V R+Q+ RS+
Sbjct: 1910 DVTRLPATIARIPPVAV-RLQMSERSI 1935
Score = 37 (18.1 bits), Expect = 8.7e-09, Sum P(3) = 8.7e-09
Identities = 29/148 (19%), Positives = 62/148 (41%)
Query: 162 QIFGNSILARKRSNKGKSVLALGVKSLEKSLDSSQVDVSCSTKPENTSAGVP-VEGSSSC 220
Q+F + + + SV+ K++++ LD +Q D + T+ ++ + + + +
Sbjct: 1235 QLFKDELGEGDNKEEDSSVIHYDDKAIDRLLDRNQ-DATEDTELQSMNEYLSSFKVAQYV 1293
Query: 221 PNDDDEKQLNASPTDSLADTKFHPA--EEVLPHSQVTKSEQNDEVPVEKHEKSSTNGSSG 278
D+DE++ + + P E++L H EQ E + +H G
Sbjct: 1294 VKDEDEEEEDVDREIIKQEESVDPDYWEKLLRHHY----EQQQE-DLARH---LGKGKRP 1345
Query: 279 IKFVLAIGASERDRKRKPEVKDEDSQKK 306
K V S+ DR + + +D+ S +
Sbjct: 1346 RKPVNYNDCSQEDRGSRRDWQDDQSDNQ 1373
>UNIPROTKB|F1NH78 [details] [associations]
symbol:F1NH78 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012957 InterPro:IPR012958 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00628 Pfam:PF08073 Pfam:PF08074
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194
SMART:SM00184 SMART:SM00249 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR023780 GeneTree:ENSGT00560000076896
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
EMBL:AADN02040929 EMBL:AADN02040930 IPI:IPI00571784
Ensembl:ENSGALT00000023340 ArrayExpress:F1NH78 Uniprot:F1NH78
Length = 1781
Score = 1215 (432.8 bits), Expect = 4.5e-151, Sum P(4) = 4.5e-151
Identities = 272/560 (48%), Positives = 364/560 (65%)
Query: 722 KDASEDELPRGKGDCQQSEIVALTEQPE--ELKGGALFPHQLEALNWLRKCWHKSKNVIL 779
K E++L + V +QP + GG L P+QLE LNWLR W + + IL
Sbjct: 595 KKLKEEKLEKPPETPLVDPTVKFDKQPWYIDATGGTLHPYQLEGLNWLRFSWAQGTDTIL 654
Query: 780 ADEMGLGKTVSACAFISSLYCEF-KAKLPCLVLVPLSTMPNWLAEFALWAPNLNVVEYHG 838
ADEMGLGKTV F+ SLY E +K P LV PLST+ NW EF +WAP+ VV Y G
Sbjct: 655 ADEMGLGKTVQTIVFLYSLYKEQGHSKGPYLVSAPLSTIINWEREFEMWAPDFYVVTYTG 714
Query: 839 CAKARAIIRQYEWHASDPDNLN-------KKTSSYKFNVLLTTYEMILADSSHLRGVPWE 891
++R++IR+ E+ D + KK + KF+VLLT+YE+I D + L + W
Sbjct: 715 DKESRSVIRENEFSFEDNAIRSGKKVFRMKKEAQIKFHVLLTSYELITIDQAVLGSIEWA 774
Query: 892 VLVVDEGHRXXXXXXXXXXXXXXXXXQHRVLLTGTPLQNNIGEMYNLLNFLQPASFPSLS 951
LVVDE HR +++LLTGTPLQNN+ E+++LLNFL P F +L
Sbjct: 775 CLVVDEAHRLKNNQSKFFRVLNSYKIDYKLLLTGTPLQNNLEELFHLLNFLTPERFNNLE 834
Query: 952 SFEEKFNDLTTTQKVEELKKLVAPHMLRRLKKDAMQNIPPKTERMVPVELSSIQAEYYRA 1011
F E+F D++ ++++L L+ PHMLRRLK D +N+P KTE +V VELS +Q +YY+
Sbjct: 835 GFLEEFADISKEDQIKKLHDLLGPHMLRRLKADVFKNMPAKTELIVRVELSQMQKKYYKF 894
Query: 1012 MLTKNYQILRNIGKGVAQQSMLNIVMQLRKVCNHPYLIP--GTE-PDSGSVEFLHEMRIK 1068
+LT+N++ L + G G Q S+LNI+M L+K CNHPYL P E P + + +K
Sbjct: 895 ILTRNFEALNSKGGG-NQVSLLNIMMDLKKCCNHPYLFPVAAVEAPVLPNGSYDGNSLVK 953
Query: 1069 ASAKLTLLHSMLKVLYKEGHRVLIFSQMTKLLDILEDYLNIEFGPKTYERVDGSVSVGDR 1128
+S KL LL MLK L GHRVLIFSQMTK+LD+LED+L E G K YER+DG ++ G R
Sbjct: 954 SSGKLMLLQKMLKKLRDGGHRVLIFSQMTKMLDLLEDFLEYE-GYK-YERIDGGITGGLR 1011
Query: 1129 QAAITRFNQDKSR-FVFLLSTRSCGLGINLATADTVIIYDSDFNPHADIQAMNRAHRIGQ 1187
Q AI RFN ++ F FLLSTR+ GLGINLATADTVIIYDSD+NPH DIQA +RAHRIGQ
Sbjct: 1012 QEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQ 1071
Query: 1188 SKRLLVYRLVVRASVEERILQLAKKKLMLDQLFV-----NKSGS--QKEVEDILRWGTEE 1240
+K++++YR V RASVEERI Q+AK+K+ML L V +KSGS ++E++DIL++GTEE
Sbjct: 1072 NKKVMIYRFVTRASVEERITQVAKRKMMLTHLVVRPGLGSKSGSMTKQELDDILKFGTEE 1131
Query: 1241 LFNDSP--GIN-GKDMGENN 1257
LF D G++ KD+ +++
Sbjct: 1132 LFKDDVEGGVSDNKDVDDSS 1151
Score = 335 (123.0 bits), Expect = 1.6e-45, Sum P(4) = 1.6e-45
Identities = 81/210 (38%), Positives = 112/210 (53%)
Query: 661 WKQPQRVISLRSSKDGTREAFVKWTGLPYDECTWE--KLDEPALEK----YSHLTDLFVQ 714
W R+++ K G +KW LPYD+CTWE ++D P E Y + +L +
Sbjct: 522 WMMIHRILNHSFDKKGDIHYLIKWKDLPYDQCTWEIDEIDIPYYENLKLLYWNHRELMLG 581
Query: 715 FERQTLKK------DASEDELPRGKGDCQQSEIVALTEQPE--ELKGGALFPHQLEALNW 766
+ + LKK E++L + V +QP + GG L P+QLE LNW
Sbjct: 582 EDTRPLKKLNKKGKKLKEEKLEKPPETPLVDPTVKFDKQPWYIDATGGTLHPYQLEGLNW 641
Query: 767 LRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEF-KAKLPCLVLVPLSTMPNWLAEFA 825
LR W + + ILADEMGLGKTV F+ SLY E +K P LV PLST+ NW EF
Sbjct: 642 LRFSWAQGTDTILADEMGLGKTVQTIVFLYSLYKEQGHSKGPYLVSAPLSTIINWEREFE 701
Query: 826 LWAPNLNVVEYHGCAKARAIIRQYEWHASD 855
+WAP+ VV Y G ++R++IR+ E+ D
Sbjct: 702 MWAPDFYVVTYTGDKESRSVIRENEFSFED 731
Score = 197 (74.4 bits), Expect = 4.5e-151, Sum P(4) = 4.5e-151
Identities = 33/72 (45%), Positives = 47/72 (65%)
Query: 56 KNEINADRSSTKKKGNDGYYYECVICDLGGNLLCCDSCPRTYHLQCLDPPLKRIPNGKWQ 115
K E + + +++ +D + C +C GG LLCCD+CP +YHL CL+PPL IPNG+W
Sbjct: 327 KEEEDEEEEGGEEEEDDHMEF-CRVCKDGGELLCCDTCPSSYHLHCLNPPLPEIPNGEWL 385
Query: 116 CPKCTQKNDQLK 127
CP+CT + LK
Sbjct: 386 CPRCTPQCPPLK 397
Score = 184 (69.8 bits), Expect = 1.0e-149, Sum P(4) = 1.0e-149
Identities = 32/72 (44%), Positives = 43/72 (59%)
Query: 63 RSSTKKKGNDGYYYE------CVICDLGGNLLCCDSCPRTYHLQCLDPPLKRIPNGKWQC 116
R KK+ +G YE C +C GG ++ CD+CPR YHL CLDP L++ P GKW C
Sbjct: 255 RRRKKKRIEEGDGYETDHQDYCEVCQQGGEIILCDTCPRAYHLVCLDPELEKAPEGKWSC 314
Query: 117 PKCTQKNDQLKP 128
P C ++ Q +P
Sbjct: 315 PHCEKEGIQWEP 326
Score = 84 (34.6 bits), Expect = 4.5e-151, Sum P(4) = 4.5e-151
Identities = 25/59 (42%), Positives = 30/59 (50%)
Query: 678 REAFVKWTGLPYDECTWEKLDEPALEKYSHLTDLFVQFERQTLKKDASEDE-LPRGKGD 735
RE FVKW GL Y C+W K E LE Y H T ++ ++R K D E G GD
Sbjct: 440 REFFVKWAGLSYWHCSWVK--ELQLELY-H-TVMYRNYQR---KNDMDEPPAFDYGSGD 491
Score = 79 (32.9 bits), Expect = 1.5e-150, Sum P(4) = 1.5e-150
Identities = 16/36 (44%), Positives = 20/36 (55%)
Query: 613 EFLVKWVGKSNIHNSWIPESQLKVLAKRKLENYKAK 648
EF VKW G S H SW+ E QL++ NY+ K
Sbjct: 441 EFFVKWAGLSYWHCSWVKELQLELYHTVMYRNYQRK 476
Score = 74 (31.1 bits), Expect = 1.6e-45, Sum P(4) = 1.6e-45
Identities = 30/144 (20%), Positives = 69/144 (47%)
Query: 1212 KKLMLDQLFVNKSGSQKEVEDILRWGTEELFND---SPGINGKDMGENNTSIEEAVR-DL 1267
KK+M+ + FV ++ ++ + + + + + PG+ K +++ ++
Sbjct: 1073 KKVMIYR-FVTRASVEERITQVAK--RKMMLTHLVVRPGLGSKSGSMTKQELDDILKFGT 1129
Query: 1268 EQKHRKR-GGGLGDVYQDKCTEGSTKIVWDENAIARLLDRSNLQSGSTDLAEGDLENDML 1326
E+ + GG+ D +K + S+ I +D+ AI++LLDR+ + T+L N+ L
Sbjct: 1130 EELFKDDVEGGVSD---NKDVDDSSVIHYDDAAISKLLDRNQDATDDTELQN---MNEYL 1183
Query: 1327 GSVKATEW---NEETTEDQAESPV 1347
S K ++ E+ +++ E +
Sbjct: 1184 SSFKVAQYVVREEDGVQEEVEREI 1207
Score = 59 (25.8 bits), Expect = 3.6e-44, Sum P(5) = 3.6e-44
Identities = 23/97 (23%), Positives = 46/97 (47%)
Query: 945 ASFPSLSSFEEKFNDLTTTQKVEE-LKKL-VAPHMLRRLKKDAMQNIPPKTERMVPVELS 1002
A+ L + D T Q + E L VA +++R ++D +Q + ER + +
Sbjct: 1158 AAISKLLDRNQDATDDTELQNMNEYLSSFKVAQYVVR--EEDGVQE---EVEREIIKQEE 1212
Query: 1003 SIQAEYYRAMLTKNYQ-----ILRNIGKGVAQQSMLN 1034
++ +Y+ +L +Y+ + RN+GKG + +N
Sbjct: 1213 NVDPDYWEKLLRHHYEQQQEDLARNLGKGKRIRKQVN 1249
Score = 52 (23.4 bits), Expect = 2.4e-09, Sum P(3) = 2.4e-09
Identities = 28/113 (24%), Positives = 48/113 (42%)
Query: 479 CMKNDIGVDRIQVYRRSVTKECKVTKE-CKGENAIDLLREDDKDSDPVAVNGKVQDESAV 537
C N + V I+V + E + +E C+ + L E ++++ + K E
Sbjct: 1516 CWANPVWVLHIKVPGSTEKVESEEYQENCESKEK--LKEEKQEENEGIQEKEKAL-EKPE 1572
Query: 538 STEDLGERNDKMVVEDADVSLRDNEGLTVSEIHITCESTDKDVDVGKKTSGSV 590
S G+ DK V D + + E SE T ++ DK+ + GKK +V
Sbjct: 1573 SNSSPGKGEDKEVKPAEDTKVEEKEQ---SE---TQQNGDKEEEDGKKDDRNV 1619
Score = 49 (22.3 bits), Expect = 4.5e-151, Sum P(4) = 4.5e-151
Identities = 12/40 (30%), Positives = 22/40 (55%)
Query: 1323 NDMLGSVKATEWNEETTEDQAESPVAAVDDASAENSERKE 1362
ND S + EW +E +++Q+E + + +D + ER E
Sbjct: 1251 ND--ASQEDQEWQDELSDNQSEYSIGS-EDEDEDFEERPE 1287
Score = 43 (20.2 bits), Expect = 2.5e-137, Sum P(5) = 2.5e-137
Identities = 13/43 (30%), Positives = 22/43 (51%)
Query: 260 NDEVPVEKHEKSSTNGSSGIKFVLAIGASERDRKRKPEVKDED 302
NDE EK E ++ S K + ++++K K + KDE+
Sbjct: 9 NDEEIEEKSESEGSDYSPNKKKKKKL-KEKKEKKTKRKKKDEE 50
Score = 41 (19.5 bits), Expect = 2.0e-09, Sum P(2) = 2.0e-09
Identities = 18/69 (26%), Positives = 32/69 (46%)
Query: 245 AEEVLPHSQVTKSE--QNDEVPVEKHEKSSTNGSSGIKFVLAIGASERDRKRKPEV---- 298
++E L + ++E Q E +EK E +S+ G K V ++ + K + E
Sbjct: 1546 SKEKLKEEKQEENEGIQEKEKALEKPESNSSPGKGEDKEVKPAEDTKVEEKEQSETQQNG 1605
Query: 299 -KDEDSQKK 306
K+E+ KK
Sbjct: 1606 DKEEEDGKK 1614
Score = 40 (19.1 bits), Expect = 3.9e-150, Sum P(4) = 3.9e-150
Identities = 12/39 (30%), Positives = 18/39 (46%)
Query: 1255 ENNTSIEEAVRDLEQKHRKRGGGLGDVYQDKCTEGSTKI 1293
E N I+E + LE+ G G+ + K E TK+
Sbjct: 1556 EENEGIQEKEKALEKPESNSSPGKGEDKEVKPAE-DTKV 1593
Score = 40 (19.1 bits), Expect = 1.0e-132, Sum P(5) = 1.0e-132
Identities = 8/28 (28%), Positives = 13/28 (46%)
Query: 723 DASEDELPRGKGDCQQSEIVALTEQPEE 750
D ++ P GK C E + +P+E
Sbjct: 301 DPELEKAPEGKWSCPHCEKEGIQWEPKE 328
Score = 39 (18.8 bits), Expect = 3.0e-10, Sum P(4) = 3.0e-10
Identities = 9/40 (22%), Positives = 19/40 (47%)
Query: 355 DVGTKGLDAQRKDELAEETTDPLDKSDKAGVHVNEIPLCK 394
D+ G + KD++ +D D D + +H ++ + K
Sbjct: 1123 DILKFGTEELFKDDVEGGVSDNKDVDDSSVIHYDDAAISK 1162
Score = 39 (18.8 bits), Expect = 4.7e-09, Sum P(3) = 4.7e-09
Identities = 6/18 (33%), Positives = 11/18 (61%)
Query: 1001 LSSIQAEYYRAMLTKNYQ 1018
+ +Q E Y ++ +NYQ
Sbjct: 457 VKELQLELYHTVMYRNYQ 474
Score = 38 (18.4 bits), Expect = 8.5e-137, Sum P(5) = 8.5e-137
Identities = 11/44 (25%), Positives = 25/44 (56%)
Query: 31 LSNGKEENLVTSESPRN--TPSAKRRLKNEINADRSSTKKKGND 72
+S+ EE SES + +P+ K++ K + ++ + +KK ++
Sbjct: 6 ISDNDEEIEEKSESEGSDYSPNKKKKKKLKEKKEKKTKRKKKDE 49
Score = 38 (18.4 bits), Expect = 4.2e-41, Sum P(5) = 4.2e-41
Identities = 11/36 (30%), Positives = 18/36 (50%)
Query: 979 RRLKKDAMQNIPPKTERMVP-VELSSIQAEYYRAML 1013
R+LK D + +PP R+ +E+ A +A L
Sbjct: 1295 RQLKSDRDKPLPPLLARVGGNIEVLGFNARQRKAFL 1330
Score = 37 (18.1 bits), Expect = 2.5e-137, Sum P(5) = 2.5e-137
Identities = 12/48 (25%), Positives = 19/48 (39%)
Query: 474 SSDEECMKNDIGVDRIQVYRRSVTKECKVTKECKGENAIDLLREDDKD 521
SS EE + + D + SV EC +G+ R ++ D
Sbjct: 219 SSSEEEEREESDFDSASINSSSVRSECSAGLGKRGKRRRKKKRIEEGD 266
>UNIPROTKB|F1N544 [details] [associations]
symbol:CHD3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0045111 "intermediate filament cytoskeleton"
evidence=IEA] [GO:0016581 "NuRD complex" evidence=IEA] [GO:0006333
"chromatin assembly or disassembly" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR009071 InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR002464 InterPro:IPR012957 InterPro:IPR012958
InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271 Pfam:PF00628
Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0006355 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
Gene3D:1.10.30.10 GO:GO:0006333 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 GO:GO:0016581 InterPro:IPR023780
GeneTree:ENSGT00560000076896 InterPro:IPR009462 InterPro:IPR009463
Pfam:PF06461 Pfam:PF06465 OMA:EPEPGYR EMBL:DAAA02048806
IPI:IPI00716282 Ensembl:ENSBTAT00000019119 ArrayExpress:F1N544
Uniprot:F1N544
Length = 1998
Score = 1205 (429.2 bits), Expect = 5.4e-151, Sum P(5) = 5.4e-151
Identities = 266/541 (49%), Positives = 355/541 (65%)
Query: 753 GGALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLV 812
GG L +QLE LNWLR W + + ILADEMGLGKT+ F+ SLY E K P LV
Sbjct: 729 GGTLHMYQLEGLNWLRFSWAQGTDTILADEMGLGKTIQTIVFLYSLYKEGHTKGPFLVSA 788
Query: 813 PLSTMPNWLAEFALWAPNLNVVEYHGCAKARAIIRQYEWHASDPDNLN-------KKTSS 865
PLST+ NW EF +WAP VV Y G +RAIIR+ E+ D K+ +
Sbjct: 789 PLSTIINWEREFQMWAPKFYVVTYTGDKDSRAIIRENEFSFEDNAIKGGKKAFKMKREAQ 848
Query: 866 YKFNVLLTTYEMILADSSHLRGVPWEVLVVDEGHRXXXXXXXXXXXXXXXXXQHRVLLTG 925
KF+VLLT+YE+I D + L + W LVVDE HR H++LLTG
Sbjct: 849 VKFHVLLTSYELITIDQAALGSIRWACLVVDEAHRLKNNQSKFFRVLNGYKIDHKLLLTG 908
Query: 926 TPLQNNIGEMYNLLNFLQPASFPSLSSFEEKFNDLTTTQKVEELKKLVAPHMLRRLKKDA 985
TPLQNN+ E+++LLNFL P F +L F E+F D++ ++++L L+ PHMLRRLK D
Sbjct: 909 TPLQNNLEELFHLLNFLTPERFNNLEGFLEEFADISKEDQIKKLHDLLGPHMLRRLKADV 968
Query: 986 MQNIPPKTERMVPVELSSIQAEYYRAMLTKNYQILRNIGKGVAQQSMLNIVMQLRKVCNH 1045
+N+P KTE +V VELS +Q +YY+ +LT+N++ L + G G Q S+LNI+M L+K CNH
Sbjct: 969 FKNMPAKTELIVRVELSPMQKKYYKYILTRNFEALNSRGGG-NQVSLLNIMMDLKKCCNH 1027
Query: 1046 PYLIPGTEPDSGSVEF-LHE--MRIKASAKLTLLHSMLKVLYKEGHRVLIFSQMTKLLDI 1102
PYL P +S + +E IKAS KL LL ML+ L ++GHRVLIFSQMTK+LD+
Sbjct: 1028 PYLFPVAAMESPKLPSGAYEGGALIKASGKLMLLQKMLRKLKEQGHRVLIFSQMTKMLDL 1087
Query: 1103 LEDYLNIEFGPKTYERVDGSVSVGDRQAAITRFN-QDKSRFVFLLSTRSCGLGINLATAD 1161
LED+L+ E G K YER+DG ++ RQ AI RFN +F FLLSTR+ GLGINLATAD
Sbjct: 1088 LEDFLDYE-GYK-YERIDGGITGALRQEAIDRFNAHGAQQFCFLLSTRAGGLGINLATAD 1145
Query: 1162 TVIIYDSDFNPHADIQAMNRAHRIGQSKRLLVYRLVVRASVEERILQLAKKKLMLDQLFV 1221
TVII+DSD+NPH DIQA +RAHRIGQ+ ++++YR V RASVEERI Q+AK+K+ML L V
Sbjct: 1146 TVIIFDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTRASVEERITQVAKRKMMLTHLVV 1205
Query: 1222 -----NKSGS--QKEVEDILRWGTEELFNDSPGINGKDMGENNTSIE---EAVRDLEQKH 1271
+K+GS ++E++DIL++GTEELF D G++ E+++ I EA+ L ++
Sbjct: 1206 RPGLGSKAGSMSKQELDDILKFGTEELFKDEN--EGENKEEDSSVIHYDNEAIARLLDRN 1263
Query: 1272 R 1272
+
Sbjct: 1264 Q 1264
Score = 325 (119.5 bits), Expect = 1.5e-41, Sum P(5) = 1.5e-41
Identities = 80/207 (38%), Positives = 104/207 (50%)
Query: 661 WKQPQRVISLRSSKDGTREAFVKWTGLPYDECTWEKLDEPALEKYSHLTDLFVQFERQTL 720
W R+I+ K G VKW LPYD+ TWE+ DE + +Y + + +
Sbjct: 626 WMTVHRIINHSVDKKGNYHYLVKWRDLPYDQSTWEE-DEMNIPEYEDHKQSYWRHRELIM 684
Query: 721 KKDASEDELPRGK-----GDCQQSE-----IVALTEQPEELK--GGALFPHQLEALNWLR 768
+D ++ + K GD S V QP + GG L +QLE LNWLR
Sbjct: 685 GEDPAQPRKYKKKKKELQGDGPPSSPTNDPTVKYETQPRFITATGGTLHMYQLEGLNWLR 744
Query: 769 KCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLSTMPNWLAEFALWA 828
W + + ILADEMGLGKT+ F+ SLY E K P LV PLST+ NW EF +WA
Sbjct: 745 FSWAQGTDTILADEMGLGKTIQTIVFLYSLYKEGHTKGPFLVSAPLSTIINWEREFQMWA 804
Query: 829 PNLNVVEYHGCAKARAIIRQYEWHASD 855
P VV Y G +RAIIR+ E+ D
Sbjct: 805 PKFYVVTYTGDKDSRAIIRENEFSFED 831
Score = 183 (69.5 bits), Expect = 5.4e-151, Sum P(5) = 5.4e-151
Identities = 30/63 (47%), Positives = 41/63 (65%)
Query: 58 EINADRSSTKKKGNDGYYYECVICDLGGNLLCCDSCPRTYHLQCLDPPLKRIPNGKWQCP 117
E + K++ +D Y C +C GG LLCCD+C +YH+ CL+PPL IPNG+W CP
Sbjct: 436 EEEGEEEGEKEEEDDHMEY-CRVCKDGGELLCCDACISSYHIHCLNPPLPDIPNGEWLCP 494
Query: 118 KCT 120
+CT
Sbjct: 495 RCT 497
Score = 178 (67.7 bits), Expect = 1.8e-150, Sum P(5) = 1.8e-150
Identities = 35/91 (38%), Positives = 48/91 (52%)
Query: 43 ESPRNTPSAKR----RLKNEINADRSSTKKKGNDGYYYE----CVICDLGGNLLCCDSCP 94
+ P T KR R K ++ + ++ DGY + C +C GG ++ CD+CP
Sbjct: 335 DGPIRTKKLKRGRPGRKKKKVLGCPAVAGEEEIDGYETDHQDYCEVCQQGGEIILCDTCP 394
Query: 95 RTYHLQCLDPPLKRIPNGKWQCPKCTQKNDQ 125
R YHL CLDP L R P GKW CP C ++ Q
Sbjct: 395 RAYHLVCLDPELDRAPEGKWSCPHCEKEGVQ 425
Score = 83 (34.3 bits), Expect = 5.4e-151, Sum P(5) = 5.4e-151
Identities = 28/73 (38%), Positives = 36/73 (49%)
Query: 664 PQRVISLRSSKDGTREAFVKWTGLPYDECTWEKLDEPALEKYSHLTDLFVQFERQTLKKD 723
P R + RS RE FVKW GL Y C+W K E LE + HL ++ ++R K D
Sbjct: 534 PPRPLQGRSE----REFFVKWVGLSYWHCSWAK--ELQLEIF-HLV-MYRNYQR---KND 582
Query: 724 ASEDE-LPRGKGD 735
E L G G+
Sbjct: 583 MDEPPPLDYGSGE 595
Score = 81 (33.6 bits), Expect = 8.7e-151, Sum P(5) = 8.7e-151
Identities = 17/36 (47%), Positives = 20/36 (55%)
Query: 613 EFLVKWVGKSNIHNSWIPESQLKVLAKRKLENYKAK 648
EF VKWVG S H SW E QL++ NY+ K
Sbjct: 545 EFFVKWVGLSYWHCSWAKELQLEIFHLVMYRNYQRK 580
Score = 69 (29.3 bits), Expect = 5.4e-151, Sum P(5) = 5.4e-151
Identities = 21/62 (33%), Positives = 32/62 (51%)
Query: 1288 EGSTKIVWDENAIARLLDRSNLQSGSTDLAEGDLENDMLGSVKATEW--NEETTEDQAES 1345
E S+ I +D AIARLLDR+ + TD+ N+ L S K ++ EE ++ E
Sbjct: 1244 EDSSVIHYDNEAIARLLDRNQDATEDTDVQN---MNEYLSSFKVAQYVVREEDKIEEIER 1300
Query: 1346 PV 1347
+
Sbjct: 1301 EI 1302
Score = 54 (24.1 bits), Expect = 3.8e-140, Sum P(6) = 3.8e-140
Identities = 16/58 (27%), Positives = 28/58 (48%)
Query: 20 RKRRKLPCGPGLSNGKEENLVTSESPRNT----PSAKRRLKNEINADRSSTKKKGNDG 73
RKR+KL + ++E SES + P KRR K+ ++ + ++K +G
Sbjct: 62 RKRKKLDSEEEFGSERDEYREKSESGGSEYGTGPGRKRRRKHREKKEKKTKRRKKGEG 119
Score = 54 (24.1 bits), Expect = 5.0e-40, Sum P(5) = 5.0e-40
Identities = 20/81 (24%), Positives = 41/81 (50%)
Query: 961 TTTQKVEE-LKKL-VAPHMLRRLKKDAMQNIPPKTERMVPVELSSIQAEYYRAMLTKNYQ 1018
T Q + E L VA +++R ++D ++ I ER + + ++ +Y+ +L +Y+
Sbjct: 1270 TDVQNMNEYLSSFKVAQYVVR--EEDKIEEI----EREIIKQEENVDPDYWEKLLRHHYE 1323
Query: 1019 -----ILRNIGKGVAQQSMLN 1034
+ RN+GKG + +N
Sbjct: 1324 QQQEDLARNLGKGKRVRKQVN 1344
Score = 46 (21.3 bits), Expect = 4.1e-147, Sum P(5) = 4.1e-147
Identities = 17/68 (25%), Positives = 30/68 (44%)
Query: 599 VTESAQVKGKAVSYEFLVKWVGKSNIHNSWIPESQLKVLAKRKLENYKAKYGTTVINICD 658
+ S KG +Y +LVKW ++W E ++ + + E++K Y I
Sbjct: 633 INHSVDKKG---NYHYLVKWRDLPYDQSTW-EEDEMNI---PEYEDHKQSYWRHRELIMG 685
Query: 659 ERWKQPQR 666
E QP++
Sbjct: 686 EDPAQPRK 693
Score = 43 (20.2 bits), Expect = 5.3e-139, Sum P(6) = 5.3e-139
Identities = 12/51 (23%), Positives = 22/51 (43%)
Query: 256 KSEQNDEVPVEKHEKSSTNGSSGIKFVLAIGASERDRKRKPEVKDEDSQKK 306
K + +E E+ E + S G ++ G R + R+ + K +KK
Sbjct: 66 KLDSEEEFGSERDEYREKSESGGSEYGTGPGRKRRRKHREKKEKKTKRRKK 116
Score = 41 (19.5 bits), Expect = 3.8e-140, Sum P(6) = 3.8e-140
Identities = 14/58 (24%), Positives = 27/58 (46%)
Query: 338 EKQRTNNDEVSASLCEVDVGTKGLDAQRKDELAEETTDPLDKSDKAGVHVNEIPLCKD 395
E R + S CE + G + +A+ ++E EE + + ++ H+ +CKD
Sbjct: 405 ELDRAPEGKWSCPHCEKE-GVQW-EAKEEEEDYEEEGEEEGEKEEEDDHMEYCRVCKD 460
Score = 39 (18.8 bits), Expect = 5.4e-151, Sum P(5) = 5.4e-151
Identities = 8/23 (34%), Positives = 15/23 (65%)
Query: 1351 DDASAENSERKEENAVTGIEENE 1373
+DA+ E+ + + E +V EE+E
Sbjct: 1346 NDAAQEDQDNQSEYSVGSEEEDE 1368
Score = 38 (18.4 bits), Expect = 2.8e-146, Sum P(5) = 2.8e-146
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 249 LPHSQVTKSEQNDEVP-VEKHEKS 271
LP+ Q T E +P E H++S
Sbjct: 652 LPYDQSTWEEDEMNIPEYEDHKQS 675
Score = 37 (18.1 bits), Expect = 1.1e-135, Sum P(5) = 1.1e-135
Identities = 13/45 (28%), Positives = 20/45 (44%)
Query: 498 KECKVTKECKGENAIDLLREDDKDSDPVAVNGKVQD-ESAVSTED 541
KE K + KGE + + K S + + ++D E S ED
Sbjct: 107 KEKKTKRRKKGEGEGGQKQVEQKSSATLLLTWGLEDVEHVFSEED 151
Score = 37 (18.1 bits), Expect = 3.7e-06, Sum P(3) = 3.7e-06
Identities = 11/43 (25%), Positives = 24/43 (55%)
Query: 425 ATATDDRHSDDFLVSENHNKILEENLACDTDLDAEVTENLAEL 467
A A R ++ ++E+H + +E+LA + +A + + L +L
Sbjct: 1824 AMALHARFAEAECLAESHQHLSKESLAGNKPANAVLHKVLNQL 1866
>UNIPROTKB|E2RTI2 [details] [associations]
symbol:CHD3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0045111 "intermediate filament cytoskeleton"
evidence=IEA] [GO:0016581 "NuRD complex" evidence=IEA] [GO:0006333
"chromatin assembly or disassembly" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR009071 InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR002464 InterPro:IPR012957 InterPro:IPR012958
InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271 Pfam:PF00628
Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0006355 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
Gene3D:1.10.30.10 GO:GO:0006333 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 GO:GO:0016581 InterPro:IPR023780
GeneTree:ENSGT00560000076896 InterPro:IPR009462 InterPro:IPR009463
Pfam:PF06461 Pfam:PF06465 OMA:EPEPGYR EMBL:AAEX03003635
EMBL:AAEX03003636 Ensembl:ENSCAFT00000026729 Uniprot:E2RTI2
Length = 1998
Score = 1204 (428.9 bits), Expect = 6.9e-151, Sum P(5) = 6.9e-151
Identities = 266/541 (49%), Positives = 356/541 (65%)
Query: 753 GGALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLV 812
GG L +QLE LNWLR W + + ILADEMGLGKT+ F+ SLY E K P LV
Sbjct: 731 GGTLHMYQLEGLNWLRFSWAQGTDTILADEMGLGKTIQTIVFLYSLYKEGHTKGPFLVSA 790
Query: 813 PLSTMPNWLAEFALWAPNLNVVEYHGCAKARAIIRQYEWHASDPDNLN-------KKTSS 865
PLST+ NW EF +WAP VV Y G +RAIIR+ E+ D K+ +
Sbjct: 791 PLSTIINWEREFQMWAPKFYVVTYTGDKDSRAIIRENEFSFEDNAIKGGKKAFKMKREAQ 850
Query: 866 YKFNVLLTTYEMILADSSHLRGVPWEVLVVDEGHRXXXXXXXXXXXXXXXXXQHRVLLTG 925
KF+VLLT+YE+I D + L + W LVVDE HR H++LLTG
Sbjct: 851 VKFHVLLTSYELITIDQAALGSIRWACLVVDEAHRLKNNQSKFFRVLNGYKIDHKLLLTG 910
Query: 926 TPLQNNIGEMYNLLNFLQPASFPSLSSFEEKFNDLTTTQKVEELKKLVAPHMLRRLKKDA 985
TPLQNN+ E+++LLNFL P F +L F E+F D++ ++++L L+ PHMLRRLK D
Sbjct: 911 TPLQNNLEELFHLLNFLTPERFNNLEGFLEEFADISKEDQIKKLHDLLGPHMLRRLKADV 970
Query: 986 MQNIPPKTERMVPVELSSIQAEYYRAMLTKNYQILRNIGKGVAQQSMLNIVMQLRKVCNH 1045
+N+P KTE +V VELS +Q +YY+ +LT+N++ L + G G Q S+LNI+M L+K CNH
Sbjct: 971 FKNMPAKTELIVRVELSPMQKKYYKYILTRNFEALNSRGGG-NQVSLLNIMMDLKKCCNH 1029
Query: 1046 PYLIPGTEPDSGSVEF-LHE--MRIKASAKLTLLHSMLKVLYKEGHRVLIFSQMTKLLDI 1102
PYL P +S + +E IKAS KL LL ML+ L ++GHRVLIFSQMTK+LD+
Sbjct: 1030 PYLFPVAAMESPKLPSGAYEGGALIKASGKLMLLQKMLRKLKEQGHRVLIFSQMTKMLDL 1089
Query: 1103 LEDYLNIEFGPKTYERVDGSVSVGDRQAAITRFNQDKSR-FVFLLSTRSCGLGINLATAD 1161
LED+L+ E G K YER+DG ++ RQ AI RFN ++ F FLLSTR+ GLGINLATAD
Sbjct: 1090 LEDFLDYE-GYK-YERIDGGITGALRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATAD 1147
Query: 1162 TVIIYDSDFNPHADIQAMNRAHRIGQSKRLLVYRLVVRASVEERILQLAKKKLMLDQLFV 1221
TVII+DSD+NPH DIQA +RAHRIGQ+ ++++YR V RASVEERI Q+AK+K+ML L V
Sbjct: 1148 TVIIFDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTRASVEERITQVAKRKMMLTHLVV 1207
Query: 1222 -----NKSGS--QKEVEDILRWGTEELFNDSPGINGKDMGENNTSIE---EAVRDLEQKH 1271
+K+GS ++E++DIL++GTEELF D G++ E+++ I EA+ L ++
Sbjct: 1208 RPGLGSKAGSMSKQELDDILKFGTEELFKDEN--EGENKEEDSSVIHYDNEAIARLLDRN 1265
Query: 1272 R 1272
+
Sbjct: 1266 Q 1266
Score = 325 (119.5 bits), Expect = 1.5e-41, Sum P(5) = 1.5e-41
Identities = 80/207 (38%), Positives = 104/207 (50%)
Query: 661 WKQPQRVISLRSSKDGTREAFVKWTGLPYDECTWEKLDEPALEKYSHLTDLFVQFERQTL 720
W R+I+ K G VKW LPYD+ TWE+ DE + +Y + + +
Sbjct: 628 WMTVHRIINHSVDKKGNYHYLVKWRDLPYDQSTWEE-DEMNIPEYEDHKQSYWRHRELIM 686
Query: 721 KKDASEDELPRGK-----GDCQQSE-----IVALTEQPEELK--GGALFPHQLEALNWLR 768
+D ++ + K GD S V QP + GG L +QLE LNWLR
Sbjct: 687 GEDPAQPRKYKKKKKELQGDGPPSSPTNDPTVKYETQPRFITATGGTLHMYQLEGLNWLR 746
Query: 769 KCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLSTMPNWLAEFALWA 828
W + + ILADEMGLGKT+ F+ SLY E K P LV PLST+ NW EF +WA
Sbjct: 747 FSWAQGTDTILADEMGLGKTIQTIVFLYSLYKEGHTKGPFLVSAPLSTIINWEREFQMWA 806
Query: 829 PNLNVVEYHGCAKARAIIRQYEWHASD 855
P VV Y G +RAIIR+ E+ D
Sbjct: 807 PKFYVVTYTGDKDSRAIIRENEFSFED 833
Score = 183 (69.5 bits), Expect = 6.9e-151, Sum P(5) = 6.9e-151
Identities = 29/65 (44%), Positives = 40/65 (61%)
Query: 56 KNEINADRSSTKKKGNDGYYYECVICDLGGNLLCCDSCPRTYHLQCLDPPLKRIPNGKWQ 115
+ E +K+ D + C +C GG LLCCD+C +YH+ CL+PPL IPNG+W
Sbjct: 435 EEEYEEGEEEGEKEEEDDHMEYCRVCKDGGELLCCDACISSYHIHCLNPPLPDIPNGEWL 494
Query: 116 CPKCT 120
CP+CT
Sbjct: 495 CPRCT 499
Score = 181 (68.8 bits), Expect = 1.1e-150, Sum P(5) = 1.1e-150
Identities = 36/99 (36%), Positives = 54/99 (54%)
Query: 32 SNGKEENLV-TSESPRNTPSAKRRLKNEINADRSSTKKKGNDGYYYE----CVICDLGGN 86
++G+ + V T + R P K+R ++ + ++ DGY + C +C GG
Sbjct: 333 ASGRPDGPVRTKKLKRGRPGRKKR---KVLGCPTVAGEEEVDGYETDHQDYCEVCQQGGE 389
Query: 87 LLCCDSCPRTYHLQCLDPPLKRIPNGKWQCPKCTQKNDQ 125
++ CD+CPR YHL CLDP L R P GKW CP C ++ Q
Sbjct: 390 IILCDTCPRAYHLVCLDPELDRAPEGKWSCPHCEKEGVQ 428
Score = 83 (34.3 bits), Expect = 6.9e-151, Sum P(5) = 6.9e-151
Identities = 28/73 (38%), Positives = 36/73 (49%)
Query: 664 PQRVISLRSSKDGTREAFVKWTGLPYDECTWEKLDEPALEKYSHLTDLFVQFERQTLKKD 723
P R + RS RE FVKW GL Y C+W K E LE + HL ++ ++R K D
Sbjct: 536 PPRPLQGRSE----REFFVKWVGLSYWHCSWAK--ELQLEIF-HLV-MYRNYQR---KND 584
Query: 724 ASEDE-LPRGKGD 735
E L G G+
Sbjct: 585 MDEPPPLDYGSGE 597
Score = 81 (33.6 bits), Expect = 1.1e-150, Sum P(5) = 1.1e-150
Identities = 17/36 (47%), Positives = 20/36 (55%)
Query: 613 EFLVKWVGKSNIHNSWIPESQLKVLAKRKLENYKAK 648
EF VKWVG S H SW E QL++ NY+ K
Sbjct: 547 EFFVKWVGLSYWHCSWAKELQLEIFHLVMYRNYQRK 582
Score = 69 (29.3 bits), Expect = 6.9e-151, Sum P(5) = 6.9e-151
Identities = 21/62 (33%), Positives = 32/62 (51%)
Query: 1288 EGSTKIVWDENAIARLLDRSNLQSGSTDLAEGDLENDMLGSVKATEW--NEETTEDQAES 1345
E S+ I +D AIARLLDR+ + TD+ N+ L S K ++ EE ++ E
Sbjct: 1246 EDSSVIHYDNEAIARLLDRNQDATEDTDVQN---MNEYLSSFKVAQYVVREEDKIEEIER 1302
Query: 1346 PV 1347
+
Sbjct: 1303 EI 1304
Score = 54 (24.1 bits), Expect = 2.3e-137, Sum P(5) = 2.3e-137
Identities = 16/58 (27%), Positives = 28/58 (48%)
Query: 20 RKRRKLPCGPGLSNGKEENLVTSESPRNT----PSAKRRLKNEINADRSSTKKKGNDG 73
RKR+KL + ++E SES + P KRR K+ ++ + ++K +G
Sbjct: 65 RKRKKLDSEEEFGSERDEYREKSESGGSEYGTGPGRKRRRKHREKKEKKTKRRKKGEG 122
Score = 54 (24.1 bits), Expect = 5.0e-40, Sum P(5) = 5.0e-40
Identities = 20/81 (24%), Positives = 41/81 (50%)
Query: 961 TTTQKVEE-LKKL-VAPHMLRRLKKDAMQNIPPKTERMVPVELSSIQAEYYRAMLTKNYQ 1018
T Q + E L VA +++R ++D ++ I ER + + ++ +Y+ +L +Y+
Sbjct: 1272 TDVQNMNEYLSSFKVAQYVVR--EEDKIEEI----EREIIKQEENVDPDYWEKLLRHHYE 1325
Query: 1019 -----ILRNIGKGVAQQSMLN 1034
+ RN+GKG + +N
Sbjct: 1326 QQQEDLARNLGKGKRVRKQVN 1346
Score = 46 (21.3 bits), Expect = 5.2e-147, Sum P(5) = 5.2e-147
Identities = 17/68 (25%), Positives = 30/68 (44%)
Query: 599 VTESAQVKGKAVSYEFLVKWVGKSNIHNSWIPESQLKVLAKRKLENYKAKYGTTVINICD 658
+ S KG +Y +LVKW ++W E ++ + + E++K Y I
Sbjct: 635 INHSVDKKG---NYHYLVKWRDLPYDQSTW-EEDEMNI---PEYEDHKQSYWRHRELIMG 687
Query: 659 ERWKQPQR 666
E QP++
Sbjct: 688 EDPAQPRK 695
Score = 44 (20.5 bits), Expect = 9.5e-07, Sum P(3) = 9.5e-07
Identities = 27/133 (20%), Positives = 50/133 (37%)
Query: 172 KRSNKGKSVLALGVKSLEKSLDSSQVDVSCSTKPENTSAGVPVEGSSSCPNDDDEKQLNA 231
KRS++ S K+ + ++S + C++KP + +GS + D+ +
Sbjct: 1524 KRSSRASSP----TKTSPTTPEASATNSPCTSKPATPAPSEKGDGSRTPLEKDEVENQEE 1579
Query: 232 SPTDSLADTKFH-------PAEEVLPHSQVTKSEQNDEVPVEKHEKSSTNGSSGIKFVLA 284
P + K PA + + K +EVP E G G + A
Sbjct: 1580 KPEKNRTGEKIETEADAPSPAPSLGERLEPRKISLEEEVPGVPGEMEPEPGYRGDREKSA 1639
Query: 285 IGASERDR-KRKP 296
++ +R + KP
Sbjct: 1640 TESTPGERGEEKP 1652
Score = 43 (20.2 bits), Expect = 3.2e-136, Sum P(5) = 3.2e-136
Identities = 12/51 (23%), Positives = 22/51 (43%)
Query: 256 KSEQNDEVPVEKHEKSSTNGSSGIKFVLAIGASERDRKRKPEVKDEDSQKK 306
K + +E E+ E + S G ++ G R + R+ + K +KK
Sbjct: 69 KLDSEEEFGSERDEYREKSESGGSEYGTGPGRKRRRKHREKKEKKTKRRKK 119
Score = 39 (18.8 bits), Expect = 6.9e-151, Sum P(5) = 6.9e-151
Identities = 8/23 (34%), Positives = 15/23 (65%)
Query: 1351 DDASAENSERKEENAVTGIEENE 1373
+DA+ E+ + + E +V EE+E
Sbjct: 1348 NDAAQEDQDNQSEYSVGSEEEDE 1370
Score = 38 (18.4 bits), Expect = 3.6e-146, Sum P(5) = 3.6e-146
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 249 LPHSQVTKSEQNDEVP-VEKHEKS 271
LP+ Q T E +P E H++S
Sbjct: 654 LPYDQSTWEEDEMNIPEYEDHKQS 677
Score = 37 (18.1 bits), Expect = 9.5e-07, Sum P(3) = 9.5e-07
Identities = 11/43 (25%), Positives = 24/43 (55%)
Query: 425 ATATDDRHSDDFLVSENHNKILEENLACDTDLDAEVTENLAEL 467
A A R ++ ++E+H + +E+LA + +A + + L +L
Sbjct: 1824 AMALHARFAEAECLAESHQHLSKESLAGNKPANAVLHKVLNQL 1866
Score = 37 (18.1 bits), Expect = 3.3e-05, Sum P(4) = 3.3e-05
Identities = 12/39 (30%), Positives = 19/39 (48%)
Query: 269 EKSSTNGSSGIKFVLAIGASERDRKRKPEVKDE-DSQKK 306
E S+TN K + + D R P KDE ++Q++
Sbjct: 1541 EASATNSPCTSKPATPAPSEKGDGSRTPLEKDEVENQEE 1579
>UNIPROTKB|F1ST12 [details] [associations]
symbol:CHD3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0045111 "intermediate filament cytoskeleton"
evidence=IEA] [GO:0016581 "NuRD complex" evidence=IEA] [GO:0006333
"chromatin assembly or disassembly" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR009071 InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR002464 InterPro:IPR012957 InterPro:IPR012958
InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271 Pfam:PF00628
Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0006355 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
Gene3D:1.10.30.10 GO:GO:0006333 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 GO:GO:0016581 InterPro:IPR023780
GeneTree:ENSGT00560000076896 InterPro:IPR009462 InterPro:IPR009463
Pfam:PF06461 Pfam:PF06465 CTD:1107 KO:K11642 OMA:EPEPGYR
EMBL:CU972380 RefSeq:XP_003132000.1 UniGene:Ssc.1663
Ensembl:ENSSSCT00000019548 GeneID:100188906 KEGG:ssc:100188906
Uniprot:F1ST12
Length = 2002
Score = 1204 (428.9 bits), Expect = 7.3e-151, Sum P(5) = 7.3e-151
Identities = 266/541 (49%), Positives = 356/541 (65%)
Query: 753 GGALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLV 812
GG L +QLE LNWLR W + + ILADEMGLGKT+ F+ SLY E K P LV
Sbjct: 733 GGTLHMYQLEGLNWLRFSWAQGTDTILADEMGLGKTIQTIVFLYSLYKEGHTKGPFLVSA 792
Query: 813 PLSTMPNWLAEFALWAPNLNVVEYHGCAKARAIIRQYEWHASDPDNLN-------KKTSS 865
PLST+ NW EF +WAP VV Y G +RAIIR+ E+ D K+ +
Sbjct: 793 PLSTIINWEREFQMWAPKFYVVTYTGDKDSRAIIRENEFSFEDNAIKGGKKAFKMKREAQ 852
Query: 866 YKFNVLLTTYEMILADSSHLRGVPWEVLVVDEGHRXXXXXXXXXXXXXXXXXQHRVLLTG 925
KF+VLLT+YE+I D + L + W LVVDE HR H++LLTG
Sbjct: 853 VKFHVLLTSYELITIDQAALGSIRWACLVVDEAHRLKNNQSKFFRVLNGYKIDHKLLLTG 912
Query: 926 TPLQNNIGEMYNLLNFLQPASFPSLSSFEEKFNDLTTTQKVEELKKLVAPHMLRRLKKDA 985
TPLQNN+ E+++LLNFL P F +L F E+F D++ ++++L L+ PHMLRRLK D
Sbjct: 913 TPLQNNLEELFHLLNFLTPERFNNLEGFLEEFADISKEDQIKKLHDLLGPHMLRRLKADV 972
Query: 986 MQNIPPKTERMVPVELSSIQAEYYRAMLTKNYQILRNIGKGVAQQSMLNIVMQLRKVCNH 1045
+N+P KTE +V VELS +Q +YY+ +LT+N++ L + G G Q S+LNI+M L+K CNH
Sbjct: 973 FKNMPAKTELIVRVELSPMQKKYYKYILTRNFEALNSRGGG-NQVSLLNIMMDLKKCCNH 1031
Query: 1046 PYLIPGTEPDSGSVEF-LHE--MRIKASAKLTLLHSMLKVLYKEGHRVLIFSQMTKLLDI 1102
PYL P +S + +E IKAS KL LL ML+ L ++GHRVLIFSQMTK+LD+
Sbjct: 1032 PYLFPVAAMESPKLPSGAYEGGALIKASGKLMLLQKMLRKLKEQGHRVLIFSQMTKMLDL 1091
Query: 1103 LEDYLNIEFGPKTYERVDGSVSVGDRQAAITRFNQDKSR-FVFLLSTRSCGLGINLATAD 1161
LED+L+ E G K YER+DG ++ RQ AI RFN ++ F FLLSTR+ GLGINLATAD
Sbjct: 1092 LEDFLDYE-GYK-YERIDGGITGALRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATAD 1149
Query: 1162 TVIIYDSDFNPHADIQAMNRAHRIGQSKRLLVYRLVVRASVEERILQLAKKKLMLDQLFV 1221
TVII+DSD+NPH DIQA +RAHRIGQ+ ++++YR V RASVEERI Q+AK+K+ML L V
Sbjct: 1150 TVIIFDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTRASVEERITQVAKRKMMLTHLVV 1209
Query: 1222 -----NKSGS--QKEVEDILRWGTEELFNDSPGINGKDMGENNTSIE---EAVRDLEQKH 1271
+K+GS ++E++DIL++GTEELF D G++ E+++ I EA+ L ++
Sbjct: 1210 RPGLGSKAGSMSKQELDDILKFGTEELFKDEN--EGENKEEDSSVIHYDNEAIARLLDRN 1267
Query: 1272 R 1272
+
Sbjct: 1268 Q 1268
Score = 325 (119.5 bits), Expect = 1.5e-41, Sum P(5) = 1.5e-41
Identities = 80/207 (38%), Positives = 104/207 (50%)
Query: 661 WKQPQRVISLRSSKDGTREAFVKWTGLPYDECTWEKLDEPALEKYSHLTDLFVQFERQTL 720
W R+I+ K G VKW LPYD+ TWE+ DE + +Y + + +
Sbjct: 630 WMTVHRIINHSVDKKGNYHYLVKWRDLPYDQSTWEE-DEMNIPEYEDHKQSYWRHRELIM 688
Query: 721 KKDASEDELPRGK-----GDCQQSE-----IVALTEQPEELK--GGALFPHQLEALNWLR 768
+D ++ + K GD S V QP + GG L +QLE LNWLR
Sbjct: 689 GEDPAQPRKYKKKKKELQGDGPPSSPTNDPTVKYETQPRFITATGGTLHMYQLEGLNWLR 748
Query: 769 KCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLSTMPNWLAEFALWA 828
W + + ILADEMGLGKT+ F+ SLY E K P LV PLST+ NW EF +WA
Sbjct: 749 FSWAQGTDTILADEMGLGKTIQTIVFLYSLYKEGHTKGPFLVSAPLSTIINWEREFQMWA 808
Query: 829 PNLNVVEYHGCAKARAIIRQYEWHASD 855
P VV Y G +RAIIR+ E+ D
Sbjct: 809 PKFYVVTYTGDKDSRAIIRENEFSFED 835
Score = 183 (69.5 bits), Expect = 7.3e-151, Sum P(5) = 7.3e-151
Identities = 30/63 (47%), Positives = 41/63 (65%)
Query: 58 EINADRSSTKKKGNDGYYYECVICDLGGNLLCCDSCPRTYHLQCLDPPLKRIPNGKWQCP 117
E + K++ +D Y C +C GG LLCCD+C +YH+ CL+PPL IPNG+W CP
Sbjct: 440 EEEGEEEGEKEEEDDHMEY-CRVCKDGGELLCCDACISSYHIHCLNPPLPDIPNGEWLCP 498
Query: 118 KCT 120
+CT
Sbjct: 499 RCT 501
Score = 179 (68.1 bits), Expect = 1.9e-150, Sum P(5) = 1.9e-150
Identities = 34/96 (35%), Positives = 51/96 (53%)
Query: 32 SNGKEENLV-TSESPRNTPSAKRRLKNEINADRSSTKKKGNDGYYYE-CVICDLGGNLLC 89
++G+ + V T + R P K++ A + G + + + C +C GG ++
Sbjct: 334 ASGRPDGPVRTKKLKRGRPGRKKKKVLGCPAVAGEEEVDGYETDHQDYCEVCQQGGEIIL 393
Query: 90 CDSCPRTYHLQCLDPPLKRIPNGKWQCPKCTQKNDQ 125
CD+CPR YHL CLDP L R P GKW CP C ++ Q
Sbjct: 394 CDTCPRAYHLVCLDPELDRAPEGKWSCPHCEKEGVQ 429
Score = 83 (34.3 bits), Expect = 7.3e-151, Sum P(5) = 7.3e-151
Identities = 28/73 (38%), Positives = 36/73 (49%)
Query: 664 PQRVISLRSSKDGTREAFVKWTGLPYDECTWEKLDEPALEKYSHLTDLFVQFERQTLKKD 723
P R + RS RE FVKW GL Y C+W K E LE + HL ++ ++R K D
Sbjct: 538 PPRPLQGRSE----REFFVKWVGLSYWHCSWAK--ELQLEIF-HLV-MYRNYQR---KND 586
Query: 724 ASEDE-LPRGKGD 735
E L G G+
Sbjct: 587 MDEPPPLDYGSGE 599
Score = 81 (33.6 bits), Expect = 1.2e-150, Sum P(5) = 1.2e-150
Identities = 17/36 (47%), Positives = 20/36 (55%)
Query: 613 EFLVKWVGKSNIHNSWIPESQLKVLAKRKLENYKAK 648
EF VKWVG S H SW E QL++ NY+ K
Sbjct: 549 EFFVKWVGLSYWHCSWAKELQLEIFHLVMYRNYQRK 584
Score = 69 (29.3 bits), Expect = 7.3e-151, Sum P(5) = 7.3e-151
Identities = 21/62 (33%), Positives = 32/62 (51%)
Query: 1288 EGSTKIVWDENAIARLLDRSNLQSGSTDLAEGDLENDMLGSVKATEW--NEETTEDQAES 1345
E S+ I +D AIARLLDR+ + TD+ N+ L S K ++ EE ++ E
Sbjct: 1248 EDSSVIHYDNEAIARLLDRNQDATEDTDVQN---MNEYLSSFKVAQYVVREEDKIEEIER 1304
Query: 1346 PV 1347
+
Sbjct: 1305 EI 1306
Score = 54 (24.1 bits), Expect = 4.1e-140, Sum P(6) = 4.1e-140
Identities = 16/58 (27%), Positives = 28/58 (48%)
Query: 20 RKRRKLPCGPGLSNGKEENLVTSESPRNT----PSAKRRLKNEINADRSSTKKKGNDG 73
RKR+KL + ++E SES + P KRR K+ ++ + ++K +G
Sbjct: 66 RKRKKLDSEEEFGSERDEYREKSESGGSEYGTGPGRKRRRKHREKKEKKTKRRKKGEG 123
Score = 54 (24.1 bits), Expect = 5.1e-40, Sum P(5) = 5.1e-40
Identities = 20/81 (24%), Positives = 41/81 (50%)
Query: 961 TTTQKVEE-LKKL-VAPHMLRRLKKDAMQNIPPKTERMVPVELSSIQAEYYRAMLTKNYQ 1018
T Q + E L VA +++R ++D ++ I ER + + ++ +Y+ +L +Y+
Sbjct: 1274 TDVQNMNEYLSSFKVAQYVVR--EEDKIEEI----EREIIKQEENVDPDYWEKLLRHHYE 1327
Query: 1019 -----ILRNIGKGVAQQSMLN 1034
+ RN+GKG + +N
Sbjct: 1328 QQQEDLARNLGKGKRVRKQVN 1348
Score = 46 (21.3 bits), Expect = 5.5e-147, Sum P(5) = 5.5e-147
Identities = 17/68 (25%), Positives = 30/68 (44%)
Query: 599 VTESAQVKGKAVSYEFLVKWVGKSNIHNSWIPESQLKVLAKRKLENYKAKYGTTVINICD 658
+ S KG +Y +LVKW ++W E ++ + + E++K Y I
Sbjct: 637 INHSVDKKG---NYHYLVKWRDLPYDQSTW-EEDEMNI---PEYEDHKQSYWRHRELIMG 689
Query: 659 ERWKQPQR 666
E QP++
Sbjct: 690 EDPAQPRK 697
Score = 45 (20.9 bits), Expect = 7.6e-07, Sum P(3) = 7.6e-07
Identities = 23/98 (23%), Positives = 41/98 (41%)
Query: 172 KRSNKGKSVLALGVKSLEKSLDSSQVDVSCSTKPENTSAGVPVEGSSS-CPNDDDEKQLN 230
KRS++ S K+ + ++S + C++KP + EG + D+ E Q
Sbjct: 1526 KRSSRASSP----TKTSPTTPEASAANSPCTSKPATPAPSEKGEGMRTPLEKDEAENQEE 1581
Query: 231 ASPTDSLADTKFHPAEEVLPHSQVTKSEQND--EVPVE 266
+S K AE P + E+ + +VP+E
Sbjct: 1582 KPEKNSKTGEKME-AEADTPSPAPSLGERLEPRKVPLE 1618
Score = 43 (20.2 bits), Expect = 5.8e-139, Sum P(6) = 5.8e-139
Identities = 12/51 (23%), Positives = 22/51 (43%)
Query: 256 KSEQNDEVPVEKHEKSSTNGSSGIKFVLAIGASERDRKRKPEVKDEDSQKK 306
K + +E E+ E + S G ++ G R + R+ + K +KK
Sbjct: 70 KLDSEEEFGSERDEYREKSESGGSEYGTGPGRKRRRKHREKKEKKTKRRKK 120
Score = 42 (19.8 bits), Expect = 4.1e-140, Sum P(6) = 4.1e-140
Identities = 14/58 (24%), Positives = 27/58 (46%)
Query: 338 EKQRTNNDEVSASLCEVDVGTKGLDAQRKDELAEETTDPLDKSDKAGVHVNEIPLCKD 395
E R + S CE + G + +A+ +D+ EE + + ++ H+ +CKD
Sbjct: 409 ELDRAPEGKWSCPHCEKE-GVQW-EAKEEDDDYEEEGEEEGEKEEEDDHMEYCRVCKD 464
Score = 39 (18.8 bits), Expect = 7.3e-151, Sum P(5) = 7.3e-151
Identities = 8/23 (34%), Positives = 15/23 (65%)
Query: 1351 DDASAENSERKEENAVTGIEENE 1373
+DA+ E+ + + E +V EE+E
Sbjct: 1350 NDAAQEDQDNQSEYSVGSEEEDE 1372
Score = 38 (18.4 bits), Expect = 3.8e-146, Sum P(5) = 3.8e-146
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 249 LPHSQVTKSEQNDEVP-VEKHEKS 271
LP+ Q T E +P E H++S
Sbjct: 656 LPYDQSTWEEDEMNIPEYEDHKQS 679
Score = 37 (18.1 bits), Expect = 7.6e-07, Sum P(3) = 7.6e-07
Identities = 11/43 (25%), Positives = 24/43 (55%)
Query: 425 ATATDDRHSDDFLVSENHNKILEENLACDTDLDAEVTENLAEL 467
A A R ++ ++E+H + +E+LA + +A + + L +L
Sbjct: 1828 AMALHARFAEAECLAESHQHLSKESLAGNKPANAVLHKVLNQL 1870
>UNIPROTKB|Q12873 [details] [associations]
symbol:CHD3 "Chromodomain-helicase-DNA-binding protein 3"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0016568 "chromatin modification"
evidence=IEA] [GO:0004386 "helicase activity" evidence=NAS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=NAS] [GO:0005634 "nucleus" evidence=IDA;NAS] [GO:0008270
"zinc ion binding" evidence=NAS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0007051 "spindle organization" evidence=IDA]
[GO:0005813 "centrosome" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0051297 "centrosome organization" evidence=IDA]
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=TAS] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=TAS] [GO:0016581 "NuRD complex" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0045111 "intermediate
filament cytoskeleton" evidence=IDA] InterPro:IPR001841
InterPro:IPR009071 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012957 InterPro:IPR012958 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00628 Pfam:PF08073 Pfam:PF08074
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194
SMART:SM00184 SMART:SM00249 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0005737 GO:GO:0005813
EMBL:CH471108 GO:GO:0005730 GO:GO:0051297 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 GO:GO:0006357 GO:GO:0006351
GO:GO:0016568 Gene3D:1.10.30.10 GO:GO:0045111 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903 GO:GO:0004003
InterPro:IPR019786 PROSITE:PS01359
Pathway_Interaction_DB:hdac_classi_pathway InterPro:IPR016197
SUPFAM:SSF54160 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0007051 GO:GO:0016581 InterPro:IPR023780
InterPro:IPR023779 PROSITE:PS00598 HOGENOM:HOG000231124
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
CTD:1107 EMBL:U91543 EMBL:AF006515 EMBL:U08379 IPI:IPI00373870
IPI:IPI00411592 RefSeq:NP_001005271.2 RefSeq:NP_001005273.1
RefSeq:NP_005843.2 UniGene:Hs.25601 ProteinModelPortal:Q12873
SMR:Q12873 DIP:DIP-32496N IntAct:Q12873 MINT:MINT-1185641
STRING:Q12873 PhosphoSite:Q12873 DMDM:88911273 PaxDb:Q12873
PRIDE:Q12873 Ensembl:ENST00000330494 Ensembl:ENST00000358181
GeneID:1107 KEGG:hsa:1107 UCSC:uc002gje.2 UCSC:uc002gjf.2
GeneCards:GC17P007788 H-InvDB:HIX0013516 HGNC:HGNC:1918
HPA:HPA043368 MIM:602120 neXtProt:NX_Q12873 PharmGKB:PA26454
HOVERGEN:HBG005326 KO:K11642 PhylomeDB:Q12873 ChiTaRS:CHD3
GenomeRNAi:1107 NextBio:4590 ArrayExpress:Q12873 Bgee:Q12873
CleanEx:HS_CHD3 Genevestigator:Q12873 GermOnline:ENSG00000170004
Uniprot:Q12873
Length = 2000
Score = 1201 (427.8 bits), Expect = 9.6e-151, Sum P(5) = 9.6e-151
Identities = 265/541 (48%), Positives = 356/541 (65%)
Query: 753 GGALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLV 812
GG L +QLE LNWLR W + + ILADEMGLGKT+ F+ SLY E K P LV
Sbjct: 733 GGTLHMYQLEGLNWLRFSWAQGTDTILADEMGLGKTIQTIVFLYSLYKEGHTKGPFLVSA 792
Query: 813 PLSTMPNWLAEFALWAPNLNVVEYHGCAKARAIIRQYEWHASDPDNLN-------KKTSS 865
PLST+ NW EF +WAP VV Y G +RAIIR+ E+ D K+ +
Sbjct: 793 PLSTIINWEREFQMWAPKFYVVTYTGDKDSRAIIRENEFSFEDNAIKGGKKAFKMKREAQ 852
Query: 866 YKFNVLLTTYEMILADSSHLRGVPWEVLVVDEGHRXXXXXXXXXXXXXXXXXQHRVLLTG 925
KF+VLLT+YE+I D + L + W LVVDE HR H++LLTG
Sbjct: 853 VKFHVLLTSYELITIDQAALGSIRWACLVVDEAHRLKNNQSKFFRVLNGYKIDHKLLLTG 912
Query: 926 TPLQNNIGEMYNLLNFLQPASFPSLSSFEEKFNDLTTTQKVEELKKLVAPHMLRRLKKDA 985
TPLQNN+ E+++LLNFL P F +L F E+F D++ ++++L L+ PHMLRRLK D
Sbjct: 913 TPLQNNLEELFHLLNFLTPERFNNLEGFLEEFADISKEDQIKKLHDLLGPHMLRRLKADV 972
Query: 986 MQNIPPKTERMVPVELSSIQAEYYRAMLTKNYQILRNIGKGVAQQSMLNIVMQLRKVCNH 1045
+N+P KTE +V VELS +Q +YY+ +LT+N++ L + G G Q S+LNI+M L+K CNH
Sbjct: 973 FKNMPAKTELIVRVELSPMQKKYYKYILTRNFEALNSRGGG-NQVSLLNIMMDLKKCCNH 1031
Query: 1046 PYLIPGTEPDSGSVEF-LHE--MRIKASAKLTLLHSMLKVLYKEGHRVLIFSQMTKLLDI 1102
PYL P +S + +E IK+S KL LL ML+ L ++GHRVLIFSQMTK+LD+
Sbjct: 1032 PYLFPVAAMESPKLPSGAYEGGALIKSSGKLMLLQKMLRKLKEQGHRVLIFSQMTKMLDL 1091
Query: 1103 LEDYLNIEFGPKTYERVDGSVSVGDRQAAITRFNQDKSR-FVFLLSTRSCGLGINLATAD 1161
LED+L+ E G K YER+DG ++ RQ AI RFN ++ F FLLSTR+ GLGINLATAD
Sbjct: 1092 LEDFLDYE-GYK-YERIDGGITGALRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATAD 1149
Query: 1162 TVIIYDSDFNPHADIQAMNRAHRIGQSKRLLVYRLVVRASVEERILQLAKKKLMLDQLFV 1221
TVII+DSD+NPH DIQA +RAHRIGQ+ ++++YR V RASVEERI Q+AK+K+ML L V
Sbjct: 1150 TVIIFDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTRASVEERITQVAKRKMMLTHLVV 1209
Query: 1222 -----NKSGS--QKEVEDILRWGTEELFNDSPGINGKDMGENNTSIE---EAVRDLEQKH 1271
+K+GS ++E++DIL++GTEELF D G++ E+++ I EA+ L ++
Sbjct: 1210 RPGLGSKAGSMSKQELDDILKFGTEELFKDEN--EGENKEEDSSVIHYDNEAIARLLDRN 1267
Query: 1272 R 1272
+
Sbjct: 1268 Q 1268
Score = 326 (119.8 bits), Expect = 4.6e-42, Sum P(5) = 4.6e-42
Identities = 80/207 (38%), Positives = 104/207 (50%)
Query: 661 WKQPQRVISLRSSKDGTREAFVKWTGLPYDECTWEKLDEPALEKYSHLTDLFVQFERQTL 720
W R+I+ K G VKW LPYD+ TWE+ DE + +Y + + +
Sbjct: 630 WMTVHRIINHSVDKKGNYHYLVKWRDLPYDQSTWEE-DEMNIPEYEEHKQSYWRHRELIM 688
Query: 721 KKDASEDELPRGK-----GDCQQSE-----IVALTEQPEELK--GGALFPHQLEALNWLR 768
+D ++ + K GD S V QP + GG L +QLE LNWLR
Sbjct: 689 GEDPAQPRKYKKKKKELQGDGPPSSPTNDPTVKYETQPRFITATGGTLHMYQLEGLNWLR 748
Query: 769 KCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLSTMPNWLAEFALWA 828
W + + ILADEMGLGKT+ F+ SLY E K P LV PLST+ NW EF +WA
Sbjct: 749 FSWAQGTDTILADEMGLGKTIQTIVFLYSLYKEGHTKGPFLVSAPLSTIINWEREFQMWA 808
Query: 829 PNLNVVEYHGCAKARAIIRQYEWHASD 855
P VV Y G +RAIIR+ E+ D
Sbjct: 809 PKFYVVTYTGDKDSRAIIRENEFSFED 835
Score = 183 (69.5 bits), Expect = 9.6e-151, Sum P(5) = 9.6e-151
Identities = 30/63 (47%), Positives = 41/63 (65%)
Query: 58 EINADRSSTKKKGNDGYYYECVICDLGGNLLCCDSCPRTYHLQCLDPPLKRIPNGKWQCP 117
E + K++ +D Y C +C GG LLCCD+C +YH+ CL+PPL IPNG+W CP
Sbjct: 440 EEEGEEEGEKEEEDDHMEY-CRVCKDGGELLCCDACISSYHIHCLNPPLPDIPNGEWLCP 498
Query: 118 KCT 120
+CT
Sbjct: 499 RCT 501
Score = 179 (68.1 bits), Expect = 2.5e-150, Sum P(5) = 2.5e-150
Identities = 34/96 (35%), Positives = 51/96 (53%)
Query: 32 SNGKEENLV-TSESPRNTPSAKRRLKNEINADRSSTKKKGNDGYYYE-CVICDLGGNLLC 89
++G+ + V T + R P K++ A + G + + + C +C GG ++
Sbjct: 334 ASGRPDGPVRTKKLKRGRPGRKKKKVLGCPAVAGEEEVDGYETDHQDYCEVCQQGGEIIL 393
Query: 90 CDSCPRTYHLQCLDPPLKRIPNGKWQCPKCTQKNDQ 125
CD+CPR YHL CLDP L R P GKW CP C ++ Q
Sbjct: 394 CDTCPRAYHLVCLDPELDRAPEGKWSCPHCEKEGVQ 429
Score = 85 (35.0 bits), Expect = 9.6e-151, Sum P(5) = 9.6e-151
Identities = 20/52 (38%), Positives = 27/52 (51%)
Query: 597 PAVTESAQVKGKAVSYEFLVKWVGKSNIHNSWIPESQLKVLAKRKLENYKAK 648
P V ++G++ EF VKWVG S H SW E QL++ NY+ K
Sbjct: 534 PDVPPPRPLQGRS-EREFFVKWVGLSYWHCSWAKELQLEIFHLVMYRNYQRK 584
Score = 83 (34.3 bits), Expect = 1.5e-150, Sum P(5) = 1.5e-150
Identities = 28/73 (38%), Positives = 36/73 (49%)
Query: 664 PQRVISLRSSKDGTREAFVKWTGLPYDECTWEKLDEPALEKYSHLTDLFVQFERQTLKKD 723
P R + RS RE FVKW GL Y C+W K E LE + HL ++ ++R K D
Sbjct: 538 PPRPLQGRSE----REFFVKWVGLSYWHCSWAK--ELQLEIF-HLV-MYRNYQR---KND 586
Query: 724 ASEDE-LPRGKGD 735
E L G G+
Sbjct: 587 MDEPPPLDYGSGE 599
Score = 69 (29.3 bits), Expect = 9.6e-151, Sum P(5) = 9.6e-151
Identities = 21/62 (33%), Positives = 32/62 (51%)
Query: 1288 EGSTKIVWDENAIARLLDRSNLQSGSTDLAEGDLENDMLGSVKATEW--NEETTEDQAES 1345
E S+ I +D AIARLLDR+ + TD+ N+ L S K ++ EE ++ E
Sbjct: 1248 EDSSVIHYDNEAIARLLDRNQDATEDTDVQN---MNEYLSSFKVAQYVVREEDKIEEIER 1304
Query: 1346 PV 1347
+
Sbjct: 1305 EI 1306
Score = 54 (24.1 bits), Expect = 1.6e-40, Sum P(5) = 1.6e-40
Identities = 20/81 (24%), Positives = 41/81 (50%)
Query: 961 TTTQKVEE-LKKL-VAPHMLRRLKKDAMQNIPPKTERMVPVELSSIQAEYYRAMLTKNYQ 1018
T Q + E L VA +++R ++D ++ I ER + + ++ +Y+ +L +Y+
Sbjct: 1274 TDVQNMNEYLSSFKVAQYVVR--EEDKIEEI----EREIIKQEENVDPDYWEKLLRHHYE 1327
Query: 1019 -----ILRNIGKGVAQQSMLN 1034
+ RN+GKG + +N
Sbjct: 1328 QQQEDLARNLGKGKRVRKQVN 1348
Score = 48 (22.0 bits), Expect = 2.3e-139, Sum P(6) = 2.3e-139
Identities = 15/58 (25%), Positives = 27/58 (46%)
Query: 20 RKRRKLPCGPGLSNGKEENLVTSESPRNT----PSAKRRLKNEINADRSSTKKKGNDG 73
RKR+K + ++E SES + P KRR K+ ++ + ++K +G
Sbjct: 66 RKRKKRDSEEEFGSERDEYREKSESGGSEYGTGPGRKRRRKHREKKEKKTKRRKKGEG 123
Score = 45 (20.9 bits), Expect = 1.5e-146, Sum P(5) = 1.5e-146
Identities = 17/68 (25%), Positives = 29/68 (42%)
Query: 599 VTESAQVKGKAVSYEFLVKWVGKSNIHNSWIPESQLKVLAKRKLENYKAKYGTTVINICD 658
+ S KG +Y +LVKW ++W E ++ + + E +K Y I
Sbjct: 637 INHSVDKKG---NYHYLVKWRDLPYDQSTW-EEDEMNI---PEYEEHKQSYWRHRELIMG 689
Query: 659 ERWKQPQR 666
E QP++
Sbjct: 690 EDPAQPRK 697
Score = 44 (20.5 bits), Expect = 6.0e-139, Sum P(6) = 6.0e-139
Identities = 12/51 (23%), Positives = 22/51 (43%)
Query: 256 KSEQNDEVPVEKHEKSSTNGSSGIKFVLAIGASERDRKRKPEVKDEDSQKK 306
K + +E E+ E + S G ++ G R + R+ + K +KK
Sbjct: 70 KRDSEEEFGSERDEYREKSESGGSEYGTGPGRKRRRKHREKKEKKTKRRKK 120
Score = 42 (19.8 bits), Expect = 2.3e-139, Sum P(6) = 2.3e-139
Identities = 14/58 (24%), Positives = 26/58 (44%)
Query: 338 EKQRTNNDEVSASLCEVDVGTKGLDAQRKDELAEETTDPLDKSDKAGVHVNEIPLCKD 395
E R + S CE + G + + ++E EE + +K ++ H+ +CKD
Sbjct: 409 ELDRAPEGKWSCPHCEKE-GVQWEAKEEEEEYEEEGEEEGEKEEEDD-HMEYCRVCKD 464
Score = 40 (19.1 bits), Expect = 5.0e-146, Sum P(5) = 5.0e-146
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 249 LPHSQVTKSEQNDEVP-VEKHEKS 271
LP+ Q T E +P E+H++S
Sbjct: 656 LPYDQSTWEEDEMNIPEYEEHKQS 679
Score = 39 (18.8 bits), Expect = 9.6e-151, Sum P(5) = 9.6e-151
Identities = 8/23 (34%), Positives = 15/23 (65%)
Query: 1351 DDASAENSERKEENAVTGIEENE 1373
+DA+ E+ + + E +V EE+E
Sbjct: 1350 NDAAQEDQDNQSEYSVGSEEEDE 1372
Score = 37 (18.1 bits), Expect = 2.4e-06, Sum P(3) = 2.4e-06
Identities = 11/43 (25%), Positives = 24/43 (55%)
Query: 425 ATATDDRHSDDFLVSENHNKILEENLACDTDLDAEVTENLAEL 467
A A R ++ ++E+H + +E+LA + +A + + L +L
Sbjct: 1826 AMALHARFAEAECLAESHQHLSKESLAGNKPANAVLHKVLNQL 1868
>UNIPROTKB|E9PG89 [details] [associations]
symbol:CHD3 "Chromodomain-helicase-DNA-binding protein 3"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0006333 "chromatin assembly or
disassembly" evidence=IEA] [GO:0016581 "NuRD complex" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0045111 "intermediate filament cytoskeleton"
evidence=IDA] InterPro:IPR001841 InterPro:IPR009071
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
InterPro:IPR001965 InterPro:IPR002464 InterPro:IPR012957
InterPro:IPR012958 InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271
Pfam:PF00628 Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690
PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184
SMART:SM00249 SMART:SM00298 SMART:SM00490 Pfam:PF00385
GO:GO:0005524 GO:GO:0005730 GO:GO:0006355 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 Gene3D:1.10.30.10 GO:GO:0045111
GO:GO:0006333 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 InterPro:IPR019786
PROSITE:PS01359 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GO:GO:0016581 InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
CTD:1107 RefSeq:NP_001005271.2 UniGene:Hs.25601 GeneID:1107
KEGG:hsa:1107 HGNC:HGNC:1918 KO:K11642 ChiTaRS:CHD3 GenomeRNAi:1107
NextBio:4590 EMBL:AC104581 IPI:IPI00465222
ProteinModelPortal:E9PG89 SMR:E9PG89 PRIDE:E9PG89
Ensembl:ENST00000380358 UCSC:uc002gjd.2 OMA:EPEPGYR
ArrayExpress:E9PG89 Bgee:E9PG89 Uniprot:E9PG89
Length = 2059
Score = 1201 (427.8 bits), Expect = 2.0e-150, Sum P(5) = 2.0e-150
Identities = 265/541 (48%), Positives = 356/541 (65%)
Query: 753 GGALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLV 812
GG L +QLE LNWLR W + + ILADEMGLGKT+ F+ SLY E K P LV
Sbjct: 792 GGTLHMYQLEGLNWLRFSWAQGTDTILADEMGLGKTIQTIVFLYSLYKEGHTKGPFLVSA 851
Query: 813 PLSTMPNWLAEFALWAPNLNVVEYHGCAKARAIIRQYEWHASDPDNLN-------KKTSS 865
PLST+ NW EF +WAP VV Y G +RAIIR+ E+ D K+ +
Sbjct: 852 PLSTIINWEREFQMWAPKFYVVTYTGDKDSRAIIRENEFSFEDNAIKGGKKAFKMKREAQ 911
Query: 866 YKFNVLLTTYEMILADSSHLRGVPWEVLVVDEGHRXXXXXXXXXXXXXXXXXQHRVLLTG 925
KF+VLLT+YE+I D + L + W LVVDE HR H++LLTG
Sbjct: 912 VKFHVLLTSYELITIDQAALGSIRWACLVVDEAHRLKNNQSKFFRVLNGYKIDHKLLLTG 971
Query: 926 TPLQNNIGEMYNLLNFLQPASFPSLSSFEEKFNDLTTTQKVEELKKLVAPHMLRRLKKDA 985
TPLQNN+ E+++LLNFL P F +L F E+F D++ ++++L L+ PHMLRRLK D
Sbjct: 972 TPLQNNLEELFHLLNFLTPERFNNLEGFLEEFADISKEDQIKKLHDLLGPHMLRRLKADV 1031
Query: 986 MQNIPPKTERMVPVELSSIQAEYYRAMLTKNYQILRNIGKGVAQQSMLNIVMQLRKVCNH 1045
+N+P KTE +V VELS +Q +YY+ +LT+N++ L + G G Q S+LNI+M L+K CNH
Sbjct: 1032 FKNMPAKTELIVRVELSPMQKKYYKYILTRNFEALNSRGGG-NQVSLLNIMMDLKKCCNH 1090
Query: 1046 PYLIPGTEPDSGSVEF-LHE--MRIKASAKLTLLHSMLKVLYKEGHRVLIFSQMTKLLDI 1102
PYL P +S + +E IK+S KL LL ML+ L ++GHRVLIFSQMTK+LD+
Sbjct: 1091 PYLFPVAAMESPKLPSGAYEGGALIKSSGKLMLLQKMLRKLKEQGHRVLIFSQMTKMLDL 1150
Query: 1103 LEDYLNIEFGPKTYERVDGSVSVGDRQAAITRFNQDKSR-FVFLLSTRSCGLGINLATAD 1161
LED+L+ E G K YER+DG ++ RQ AI RFN ++ F FLLSTR+ GLGINLATAD
Sbjct: 1151 LEDFLDYE-GYK-YERIDGGITGALRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATAD 1208
Query: 1162 TVIIYDSDFNPHADIQAMNRAHRIGQSKRLLVYRLVVRASVEERILQLAKKKLMLDQLFV 1221
TVII+DSD+NPH DIQA +RAHRIGQ+ ++++YR V RASVEERI Q+AK+K+ML L V
Sbjct: 1209 TVIIFDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTRASVEERITQVAKRKMMLTHLVV 1268
Query: 1222 -----NKSGS--QKEVEDILRWGTEELFNDSPGINGKDMGENNTSIE---EAVRDLEQKH 1271
+K+GS ++E++DIL++GTEELF D G++ E+++ I EA+ L ++
Sbjct: 1269 RPGLGSKAGSMSKQELDDILKFGTEELFKDEN--EGENKEEDSSVIHYDNEAIARLLDRN 1326
Query: 1272 R 1272
+
Sbjct: 1327 Q 1327
Score = 326 (119.8 bits), Expect = 5.5e-42, Sum P(5) = 5.5e-42
Identities = 80/207 (38%), Positives = 104/207 (50%)
Query: 661 WKQPQRVISLRSSKDGTREAFVKWTGLPYDECTWEKLDEPALEKYSHLTDLFVQFERQTL 720
W R+I+ K G VKW LPYD+ TWE+ DE + +Y + + +
Sbjct: 689 WMTVHRIINHSVDKKGNYHYLVKWRDLPYDQSTWEE-DEMNIPEYEEHKQSYWRHRELIM 747
Query: 721 KKDASEDELPRGK-----GDCQQSE-----IVALTEQPEELK--GGALFPHQLEALNWLR 768
+D ++ + K GD S V QP + GG L +QLE LNWLR
Sbjct: 748 GEDPAQPRKYKKKKKELQGDGPPSSPTNDPTVKYETQPRFITATGGTLHMYQLEGLNWLR 807
Query: 769 KCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLSTMPNWLAEFALWA 828
W + + ILADEMGLGKT+ F+ SLY E K P LV PLST+ NW EF +WA
Sbjct: 808 FSWAQGTDTILADEMGLGKTIQTIVFLYSLYKEGHTKGPFLVSAPLSTIINWEREFQMWA 867
Query: 829 PNLNVVEYHGCAKARAIIRQYEWHASD 855
P VV Y G +RAIIR+ E+ D
Sbjct: 868 PKFYVVTYTGDKDSRAIIRENEFSFED 894
Score = 183 (69.5 bits), Expect = 2.0e-150, Sum P(5) = 2.0e-150
Identities = 30/63 (47%), Positives = 41/63 (65%)
Query: 58 EINADRSSTKKKGNDGYYYECVICDLGGNLLCCDSCPRTYHLQCLDPPLKRIPNGKWQCP 117
E + K++ +D Y C +C GG LLCCD+C +YH+ CL+PPL IPNG+W CP
Sbjct: 499 EEEGEEEGEKEEEDDHMEY-CRVCKDGGELLCCDACISSYHIHCLNPPLPDIPNGEWLCP 557
Query: 118 KCT 120
+CT
Sbjct: 558 RCT 560
Score = 179 (68.1 bits), Expect = 5.2e-150, Sum P(5) = 5.2e-150
Identities = 34/96 (35%), Positives = 51/96 (53%)
Query: 32 SNGKEENLV-TSESPRNTPSAKRRLKNEINADRSSTKKKGNDGYYYE-CVICDLGGNLLC 89
++G+ + V T + R P K++ A + G + + + C +C GG ++
Sbjct: 393 ASGRPDGPVRTKKLKRGRPGRKKKKVLGCPAVAGEEEVDGYETDHQDYCEVCQQGGEIIL 452
Query: 90 CDSCPRTYHLQCLDPPLKRIPNGKWQCPKCTQKNDQ 125
CD+CPR YHL CLDP L R P GKW CP C ++ Q
Sbjct: 453 CDTCPRAYHLVCLDPELDRAPEGKWSCPHCEKEGVQ 488
Score = 85 (35.0 bits), Expect = 2.0e-150, Sum P(5) = 2.0e-150
Identities = 20/52 (38%), Positives = 27/52 (51%)
Query: 597 PAVTESAQVKGKAVSYEFLVKWVGKSNIHNSWIPESQLKVLAKRKLENYKAK 648
P V ++G++ EF VKWVG S H SW E QL++ NY+ K
Sbjct: 593 PDVPPPRPLQGRS-EREFFVKWVGLSYWHCSWAKELQLEIFHLVMYRNYQRK 643
Score = 83 (34.3 bits), Expect = 3.2e-150, Sum P(5) = 3.2e-150
Identities = 28/73 (38%), Positives = 36/73 (49%)
Query: 664 PQRVISLRSSKDGTREAFVKWTGLPYDECTWEKLDEPALEKYSHLTDLFVQFERQTLKKD 723
P R + RS RE FVKW GL Y C+W K E LE + HL ++ ++R K D
Sbjct: 597 PPRPLQGRSE----REFFVKWVGLSYWHCSWAK--ELQLEIF-HLV-MYRNYQR---KND 645
Query: 724 ASEDE-LPRGKGD 735
E L G G+
Sbjct: 646 MDEPPPLDYGSGE 658
Score = 69 (29.3 bits), Expect = 2.0e-150, Sum P(5) = 2.0e-150
Identities = 21/62 (33%), Positives = 32/62 (51%)
Query: 1288 EGSTKIVWDENAIARLLDRSNLQSGSTDLAEGDLENDMLGSVKATEW--NEETTEDQAES 1345
E S+ I +D AIARLLDR+ + TD+ N+ L S K ++ EE ++ E
Sbjct: 1307 EDSSVIHYDNEAIARLLDRNQDATEDTDVQN---MNEYLSSFKVAQYVVREEDKIEEIER 1363
Query: 1346 PV 1347
+
Sbjct: 1364 EI 1365
Score = 54 (24.1 bits), Expect = 1.9e-40, Sum P(5) = 1.9e-40
Identities = 20/81 (24%), Positives = 41/81 (50%)
Query: 961 TTTQKVEE-LKKL-VAPHMLRRLKKDAMQNIPPKTERMVPVELSSIQAEYYRAMLTKNYQ 1018
T Q + E L VA +++R ++D ++ I ER + + ++ +Y+ +L +Y+
Sbjct: 1333 TDVQNMNEYLSSFKVAQYVVR--EEDKIEEI----EREIIKQEENVDPDYWEKLLRHHYE 1386
Query: 1019 -----ILRNIGKGVAQQSMLN 1034
+ RN+GKG + +N
Sbjct: 1387 QQQEDLARNLGKGKRVRKQVN 1407
Score = 48 (22.0 bits), Expect = 5.4e-139, Sum P(6) = 5.4e-139
Identities = 15/58 (25%), Positives = 27/58 (46%)
Query: 20 RKRRKLPCGPGLSNGKEENLVTSESPRNT----PSAKRRLKNEINADRSSTKKKGNDG 73
RKR+K + ++E SES + P KRR K+ ++ + ++K +G
Sbjct: 125 RKRKKRDSEEEFGSERDEYREKSESGGSEYGTGPGRKRRRKHREKKEKKTKRRKKGEG 182
Score = 47 (21.6 bits), Expect = 3.5e-136, Sum P(5) = 3.5e-136
Identities = 11/50 (22%), Positives = 27/50 (54%)
Query: 515 LREDDKDSDPVAVNGKVQDESAVSTEDLGERNDKMVVEDADVSLRDNEGL 564
LR+++++ + + V+ + ++E E E +++ D D D+EG+
Sbjct: 5 LRDEEEEEEEMVVSEEEEEEEEEGDE---EEEEEVEAADEDDEEDDDEGV 51
Score = 45 (20.9 bits), Expect = 3.1e-146, Sum P(5) = 3.1e-146
Identities = 17/68 (25%), Positives = 29/68 (42%)
Query: 599 VTESAQVKGKAVSYEFLVKWVGKSNIHNSWIPESQLKVLAKRKLENYKAKYGTTVINICD 658
+ S KG +Y +LVKW ++W E ++ + + E +K Y I
Sbjct: 696 INHSVDKKG---NYHYLVKWRDLPYDQSTW-EEDEMNI---PEYEEHKQSYWRHRELIMG 748
Query: 659 ERWKQPQR 666
E QP++
Sbjct: 749 EDPAQPRK 756
Score = 44 (20.5 bits), Expect = 1.4e-138, Sum P(6) = 1.4e-138
Identities = 12/51 (23%), Positives = 22/51 (43%)
Query: 256 KSEQNDEVPVEKHEKSSTNGSSGIKFVLAIGASERDRKRKPEVKDEDSQKK 306
K + +E E+ E + S G ++ G R + R+ + K +KK
Sbjct: 129 KRDSEEEFGSERDEYREKSESGGSEYGTGPGRKRRRKHREKKEKKTKRRKK 179
Score = 42 (19.8 bits), Expect = 5.4e-139, Sum P(6) = 5.4e-139
Identities = 14/58 (24%), Positives = 26/58 (44%)
Query: 338 EKQRTNNDEVSASLCEVDVGTKGLDAQRKDELAEETTDPLDKSDKAGVHVNEIPLCKD 395
E R + S CE + G + + ++E EE + +K ++ H+ +CKD
Sbjct: 468 ELDRAPEGKWSCPHCEKE-GVQWEAKEEEEEYEEEGEEEGEKEEEDD-HMEYCRVCKD 523
Score = 40 (19.1 bits), Expect = 1.0e-145, Sum P(5) = 1.0e-145
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 249 LPHSQVTKSEQNDEVP-VEKHEKS 271
LP+ Q T E +P E+H++S
Sbjct: 715 LPYDQSTWEEDEMNIPEYEEHKQS 738
Score = 39 (18.8 bits), Expect = 2.0e-150, Sum P(5) = 2.0e-150
Identities = 8/23 (34%), Positives = 15/23 (65%)
Query: 1351 DDASAENSERKEENAVTGIEENE 1373
+DA+ E+ + + E +V EE+E
Sbjct: 1409 NDAAQEDQDNQSEYSVGSEEEDE 1431
Score = 37 (18.1 bits), Expect = 3.9e-135, Sum P(5) = 3.9e-135
Identities = 7/22 (31%), Positives = 12/22 (54%)
Query: 509 ENAIDLLREDDKDSDPVAVNGK 530
E ++ EDD++ D V G+
Sbjct: 33 EEEVEAADEDDEEDDDEGVLGR 54
Score = 37 (18.1 bits), Expect = 2.6e-06, Sum P(3) = 2.6e-06
Identities = 11/43 (25%), Positives = 24/43 (55%)
Query: 425 ATATDDRHSDDFLVSENHNKILEENLACDTDLDAEVTENLAEL 467
A A R ++ ++E+H + +E+LA + +A + + L +L
Sbjct: 1885 AMALHARFAEAECLAESHQHLSKESLAGNKPANAVLHKVLNQL 1927
>TAIR|locus:2040184 [details] [associations]
symbol:PKL "PICKLE" species:3702 "Arabidopsis thaliana"
[GO:0003674 "molecular_function" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA;ISS] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IEA;IDA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003678 "DNA helicase activity" evidence=ISS] [GO:0016568
"chromatin modification" evidence=ISS] [GO:0016887 "ATPase
activity" evidence=ISS] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=IMP] [GO:0009736 "cytokinin
mediated signaling pathway" evidence=IMP] [GO:0009733 "response to
auxin stimulus" evidence=IMP] [GO:2000023 "regulation of lateral
root development" evidence=IMP] [GO:0009788 "negative regulation of
abscisic acid mediated signaling pathway" evidence=IMP] [GO:0006346
"methylation-dependent chromatin silencing" evidence=RCA]
[GO:0016246 "RNA interference" evidence=RCA] [GO:0008283 "cell
proliferation" evidence=IMP] [GO:0009739 "response to gibberellin
stimulus" evidence=IMP] [GO:0048364 "root development"
evidence=IMP] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271 Pfam:PF00628
PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS50089 PROSITE:PS51194
SMART:SM00184 SMART:SM00249 SMART:SM00298 SMART:SM00490
Pfam:PF00385 Prosite:PS00518 GO:GO:0005524 GO:GO:0005634
GO:GO:0045892 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0009733
GO:GO:0046872 GO:GO:0003677 GO:GO:0008283 GO:GO:0008270
GO:GO:0016568 GO:GO:0048364 GO:GO:0009739 GO:GO:0009788
GO:GO:0009736 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 GO:GO:0004386 InterPro:IPR019786
PROSITE:PS01359 InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
PROSITE:PS00598 HOGENOM:HOG000231124 InterPro:IPR009462
InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465 KO:K11643
EMBL:AF185578 EMBL:AF185577 EMBL:AK229409 IPI:IPI00521160
PIR:T52301 RefSeq:NP_565587.1 UniGene:At.11745
ProteinModelPortal:Q9S775 SMR:Q9S775 STRING:Q9S775 PaxDb:Q9S775
PRIDE:Q9S775 EnsemblPlants:AT2G25170.1 GeneID:817055
KEGG:ath:AT2G25170 TAIR:At2g25170 InParanoid:Q9S775 OMA:NVVMYFG
PhylomeDB:Q9S775 ProtClustDB:CLSN2688404 Genevestigator:Q9S775
GermOnline:AT2G25170 GO:GO:2000023 Uniprot:Q9S775
Length = 1384
Score = 1368 (486.6 bits), Expect = 4.6e-150, Sum P(2) = 4.6e-150
Identities = 317/794 (39%), Positives = 471/794 (59%)
Query: 613 EFLVKWVGKSNIHNSWIPESQLKVL------AKRKLENYKAKYGTTVINICDE------R 660
++LVKW G S +H SW+PE + + K ++ N+ + + N D+
Sbjct: 130 QYLVKWKGLSYLHCSWVPEKEFQKAYKSNHRLKTRVNNFHRQM-ESFNNSEDDFVAIRPE 188
Query: 661 WKQPQRVISLRSSKDGTREAFVKWTGLPYDECTWEKLDEPALEKYSHLTDLFVQFERQTL 720
W R+++ R +DG E VK+ L YDEC WE E + + + F +T
Sbjct: 189 WTTVDRILACRE-EDGELEYLVKYKELSYDECYWES--ESDISTFQNEIQRFKDVNSRTR 245
Query: 721 K-KDASEDELPRGKGDCQQSEIVALTEQPEELKGGALFPHQLEALNWLRKCWHKSKNVIL 779
+ KD PR D QQ + PE LKG L P+QLE LN+LR W K +VIL
Sbjct: 246 RSKDVDHKRNPR---DFQQFD-----HTPEFLKG-LLHPYQLEGLNFLRFSWSKQTHVIL 296
Query: 780 ADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLSTMPNWLAEFALWAPNLNVVEYHGC 839
ADEMGLGKT+ + A ++SL+ E +P LV+ PLST+ NW EFA WAP +NVV Y G
Sbjct: 297 ADEMGLGKTIQSIALLASLFEE--NLIPHLVIAPLSTLRNWEREFATWAPQMNVVMYFGT 354
Query: 840 AKARAIIRQYEWHAS-DPDNLNKKTSSY----------KFNVLLTTYEMILADSSHLRGV 888
A+ARA+IR++E++ S D + KK S KF+VLLT+YEMI DS+ L+ +
Sbjct: 355 AQARAVIREHEFYLSKDQKKIKKKKSGQISSESKQKRIKFDVLLTSYEMINLDSAVLKPI 414
Query: 889 PWEVLVVDEGHRXXXXXXXXXXXXXXXXXQHRVLLTGTPLQNNIGEMYNLLNFLQPASFP 948
WE ++VDEGHR HR+LLTGTPLQNN+ E++ L++FL F
Sbjct: 415 KWECMIVDEGHRLKNKDSKLFSSLTQYSSNHRILLTGTPLQNNLDELFMLMHFLDAGKFG 474
Query: 949 SLSSFEEKFNDLTTTQKVEELKKLVAPHMLRRLKKDAMQNIPPKTERMVPVELSSIQAEY 1008
SL F+E+F D+ +++ L K++APH+LRR+KKD M+++PPK E ++ V+LSS+Q EY
Sbjct: 475 SLEEFQEEFKDINQEEQISRLHKMLAPHLLRRVKKDVMKDMPPKKELILRVDLSSLQKEY 534
Query: 1009 YRAMLTKNYQILRNIGKGVAQQSMLNIVMQLRKVCNHPYLIPGTEPDSGSVEFLHEMRIK 1068
Y+A+ T+NYQ+L KG AQ S+ NI+M+LRKVC HPY++ G EP + ++
Sbjct: 535 YKAIFTRNYQVLTK--KGGAQISLNNIMMELRKVCCHPYMLEGVEPVIHDANEAFKQLLE 592
Query: 1069 ASAKLTLLHSMLKVLYKEGHRVLIFSQMTKLLDILEDYLNIEFGPKTYERVDGSVSVGDR 1128
+ KL LL M+ L ++GHRVLI++Q +LD+LEDY + YER+DG V +R
Sbjct: 593 SCGKLQLLDKMMVKLKEQGHRVLIYTQFQHMLDLLEDYCTHK--KWQYERIDGKVGGAER 650
Query: 1129 QAAITRFN-QDKSRFVFLLSTRSCGLGINLATADTVIIYDSDFNPHADIQAMNRAHRIGQ 1187
Q I RFN ++ ++F FLLSTR+ GLGINLATADTVIIYDSD+NPHAD+QAM RAHR+GQ
Sbjct: 651 QIRIDRFNAKNSNKFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQ 710
Query: 1188 SKRLLVYRLVVRASVEERILQLAKKKLMLDQLFVNK----SGSQKEVEDILRWGTEELF- 1242
+ ++++YRL+ R ++EER++QL KKK++L+ L V K + +Q+E++DI+R+G++ELF
Sbjct: 711 TNKVMIYRLINRGTIEERMMQLTKKKMVLEHLVVGKLKTQNINQEELDDIIRYGSKELFA 770
Query: 1243 --NDSPGINGKDMGENNTSIEEAV-RDLEQKHRKRGGGLGDVYQDKCTEGSTKIVWDENA 1299
+D G +GK + ++ +I++ + RDL + D+ G K N
Sbjct: 771 SEDDEAGKSGK-IHYDDAAIDKLLDRDLVEAEEVS-------VDDEEENGFLKAFKVANF 822
Query: 1300 IARLLDRSNLQSGSTDLAEGDLENDMLGSVKATEWNEETTEDQAESPVAAVDDASAENSE 1359
+D + + + ++ S +A+ W EE +D+ E A ++ +A
Sbjct: 823 --EYIDENEAAALEAQRVAAESKSSAGNSDRASYW-EELLKDKFELHQA--EELNALGKR 877
Query: 1360 RKEENAVTGIEENE 1373
++ + IEE++
Sbjct: 878 KRSRKQLVSIEEDD 891
Score = 118 (46.6 bits), Expect = 4.6e-150, Sum P(2) = 4.6e-150
Identities = 41/161 (25%), Positives = 74/161 (45%)
Query: 78 CVICDLGGNLLCCDSCPRTYHLQCLDPPLKRIPNGKWQCPKCTQK-ND-------QLKPI 129
C C NL+ C++C +H +CL PPLK W+CP+C N+ +++P
Sbjct: 52 CQACGESTNLVSCNTCTYAFHAKCLVPPLKDASVENWRCPECVSPLNEIDKILDCEMRPT 111
Query: 130 SNLDSISKRARSKIITIKSQSGVKSSGADKVSQIFGNSILARK--RSNKGKSVLALGVKS 187
+ + S A K I +K Q VK G +S + + + ++ ++ K L V +
Sbjct: 112 KSSEQGSSDAEPKPIFVK-QYLVKWKG---LSYLHCSWVPEKEFQKAYKSNHRLKTRVNN 167
Query: 188 LEKSLDS--SQVDVSCSTKPENTSAGVPVEGSSSCPNDDDE 226
+ ++S + D + +PE T+ V+ +C +D E
Sbjct: 168 FHRQMESFNNSEDDFVAIRPEWTT----VDRILACREEDGE 204
Score = 38 (18.4 bits), Expect = 1.3e-141, Sum P(2) = 1.3e-141
Identities = 7/26 (26%), Positives = 15/26 (57%)
Query: 393 CKDIVPFELQQVDRVLGCRVKGDDTS 418
C + V L ++D++L C ++ +S
Sbjct: 90 CPECVS-PLNEIDKILDCEMRPTKSS 114
Score = 37 (18.1 bits), Expect = 1.7e-141, Sum P(2) = 1.7e-141
Identities = 7/12 (58%), Positives = 8/12 (66%)
Query: 400 ELQQVDRVLGCR 411
E VDR+L CR
Sbjct: 188 EWTTVDRILACR 199
>FB|FBgn0023395 [details] [associations]
symbol:Chd3 "Chd3" species:7227 "Drosophila melanogaster"
[GO:0006333 "chromatin assembly or disassembly" evidence=ISS;NAS]
[GO:0004003 "ATP-dependent DNA helicase activity" evidence=ISS]
[GO:0003682 "chromatin binding" evidence=ISS] [GO:0004386 "helicase
activity" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
InterPro:IPR001965 InterPro:IPR002464 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00628 PROSITE:PS00690
PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 EMBL:AE014296 GO:GO:0006355 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 GO:GO:0006351 GO:GO:0006333
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 GO:GO:0004386 InterPro:IPR019786 PROSITE:PS01359
InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR023780 PROSITE:PS00598 GeneTree:ENSGT00560000076896
InterPro:IPR009463 Pfam:PF06465 EMBL:AY071503 EMBL:AF007780
RefSeq:NP_649111.1 ProteinModelPortal:O16102 SMR:O16102
DIP:DIP-21327N MINT:MINT-1651376 STRING:O16102 PaxDb:O16102
EnsemblMetazoa:FBtr0074998 GeneID:40111 KEGG:dme:Dmel_CG9594
UCSC:CG9594-RA CTD:1107 FlyBase:FBgn0023395 InParanoid:O16102
OMA:IKWRDLA OrthoDB:EOG4JH9WN PhylomeDB:O16102 GenomeRNAi:40111
NextBio:817050 Bgee:O16102 GermOnline:CG9594 Uniprot:O16102
Length = 892
Score = 1223 (435.6 bits), Expect = 1.9e-146, Sum P(3) = 1.9e-146
Identities = 291/694 (41%), Positives = 410/694 (59%)
Query: 613 EFLVKWVGKSNIHNSWIPESQLKVLAKRKLENYKAKYGT---TVINICD------ER--- 660
E+ +KW G S H WIPE Q+ + + +++ + ++ + D ER
Sbjct: 112 EYFIKWHGMSYWHCEWIPEGQMLLHHASMVASFQRRSDMEEPSLEELDDQDGNLHERFYR 171
Query: 661 ------WKQPQRVISLRSSKDGTREAFVKWTGLPYDECTWEKLDEPALEKYSHLTDLFVQ 714
W QRVI+ +G VKW L Y++ +WE+ + ++ + L+ +
Sbjct: 172 YGIKPEWLLVQRVINHSEEPNGGTMYLVKWRELSYNDSSWER-ESDSIPGLNQAIALYKK 230
Query: 715 FERQTLKKDASEDELPRGKGDCQQSEIVALTEQPEELK--GGALFPHQLEALNWLRKCWH 772
++ K D P D + +QP LK G L P Q+E ++WLR W
Sbjct: 231 L--RSSNKGRQRDR-PAPTIDLNKK----YEDQPVFLKEAGLKLHPFQIEGVSWLRYSWG 283
Query: 773 KSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLSTMPNWLAEFALWAPNLN 832
+ ILADEMGLGKT+ F+ SL+ E + P L+ VPLST+ NW E LWAP L
Sbjct: 284 QGIPTILADEMGLGKTIQTVVFLYSLFKEGHCRGPFLISVPLSTLTNWERELELWAPELY 343
Query: 833 VVEYHGCAKARAIIRQYE--WHASDPDNLNKKTSSYKFNVLLTTYEMILADSSHLRGVPW 890
V Y G ARA+IR++E + + + + YKFNV+LT+YE I D++ L + W
Sbjct: 344 CVTYVGGKTARAVIRKHEISFEEVTTKTMRENQTQYKFNVMLTSYEFISVDAAFLGCIDW 403
Query: 891 EVLVVDEGHRXXXXXXXXXXXXXXXXXQHRVLLTGTPLQNNIGEMYNLLNFLQPASFPSL 950
LVVDE HR +++LLTGTPLQNN+ E+++LLNFL F L
Sbjct: 404 AALVVDEAHRLRSNQSKFFRILSKYRIGYKLLLTGTPLQNNLEELFHLLNFLSSGKFNDL 463
Query: 951 SSFEEKFNDLTTTQKVEELKKLVAPHMLRRLKKDAMQNIPPKTERMVPVELSSIQAEYYR 1010
+F+ +F D++ ++V+ L +++ PHMLRRLK D ++++PPK+E +V VELSS+Q ++Y+
Sbjct: 464 QTFQAEFTDVSKEEQVKRLHEILEPHMLRRLKADVLKSMPPKSEFIVRVELSSMQKKFYK 523
Query: 1011 AMLTKNYQILRNIGKGVAQQSMLNIVMQLRKVCNHPYLIPGTEPDSG-SVEFLHEMR--I 1067
+LTKN++ L G G S+LNI+M LRK CNHPYL P ++ S L+EM
Sbjct: 524 HILTKNFKALNQKGGGRVC-SLLNIMMDLRKCCNHPYLFPSAAEEATISPSGLYEMSSLT 582
Query: 1068 KASAKLTLLHSMLKVLYKEGHRVLIFSQMTKLLDILEDYLNIEFGPKTYERVDGSVSVGD 1127
KAS KL LL MLK L + HRVL+FSQMTK+L++LE +L E G + Y+R+DGS+ GD
Sbjct: 583 KASGKLDLLSKMLKQLKADNHRVLLFSQMTKMLNVLEHFLEGE-GYQ-YDRIDGSIK-GD 639
Query: 1128 -RQAAITRFNQDKSR-FVFLLSTRSCGLGINLATADTVIIYDSDFNPHADIQAMNRAHRI 1185
RQ AI RFN S FVFLLSTR+ GLGINLATADTVII+DSD+NPH D+QA +RAHR+
Sbjct: 640 LRQKAIDRFNDPVSEHFVFLLSTRAGGLGINLATADTVIIFDSDWNPHNDVQAFSRAHRM 699
Query: 1186 GQSKRLLVYRLVVRASVEERILQLAKKKLMLDQLFVNKS--G-----SQKEVEDILRWGT 1238
GQ K++++YR V SVEERI+Q+AK K+ML L V G S+ E+EDILR+GT
Sbjct: 700 GQKKKVMIYRFVTHNSVEERIMQVAKHKMMLTHLVVRPGMGGMTTNFSKDELEDILRFGT 759
Query: 1239 EELFND--SPGINGKDMGENNTSIEEAVRDLEQK 1270
E+LF D S I+ D + ++ R +E+K
Sbjct: 760 EDLFKDGKSEAIHYDDKAVADL-LDRTNRGIEEK 792
Score = 184 (69.8 bits), Expect = 1.9e-146, Sum P(3) = 1.9e-146
Identities = 31/56 (55%), Positives = 37/56 (66%)
Query: 64 SSTKKKGNDGYYYECVICDLGGNLLCCDSCPRTYHLQCLDPPLKRIPNGKWQCPKC 119
++ K+K D Y C +C GG+LLCCDSCP YH CL PPLK IP G W CP+C
Sbjct: 26 NAKKQKFRDEEY--CKVCSDGGDLLCCDSCPSVYHRTCLSPPLKSIPKGDWICPRC 79
Score = 93 (37.8 bits), Expect = 2.3e-15, Sum P(3) = 2.3e-15
Identities = 24/80 (30%), Positives = 39/80 (48%)
Query: 660 RWKQPQRVISLRSSK-DGTREAFVKWTGLPYDECTWEKLDEPALEKYSHLTDLFVQFERQ 718
RW R + LR+SK + RE F+KW G+ Y C W P + H + F+R+
Sbjct: 93 RWAL-DRSVELRTSKGEKRREYFIKWHGMSYWHCEWI----PEGQMLLHHASMVASFQRR 147
Query: 719 TLKKDASEDELPRGKGDCQQ 738
+ ++ S +EL G+ +
Sbjct: 148 SDMEEPSLEELDDQDGNLHE 167
Score = 60 (26.2 bits), Expect = 1.9e-146, Sum P(3) = 1.9e-146
Identities = 22/68 (32%), Positives = 34/68 (50%)
Query: 1277 GLGDVYQDKCTEGSTKIVWDENAIARLLDRSNLQSGSTDLAEGDLENDMLGSVKATEWNE 1336
G D+++D +E I +D+ A+A LLDR+N G + + N+ L S K +
Sbjct: 758 GTEDLFKDGKSEA---IHYDDKAVADLLDRTN--RGIEE--KESWANEYLSSFKVASY-- 808
Query: 1337 ETTEDQAE 1344
T ED E
Sbjct: 809 ATKEDHEE 816
>WB|WBGene00002637 [details] [associations]
symbol:let-418 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0016818 "hydrolase activity,
acting on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0040035 "hermaphrodite genitalia
development" evidence=IMP] [GO:0048557 "embryonic digestive tract
morphogenesis" evidence=IGI] [GO:0000977 "RNA polymerase II
regulatory region sequence-specific DNA binding" evidence=IDA]
[GO:0000122 "negative regulation of transcription from RNA
polymerase II promoter" evidence=IMP] [GO:0008134 "transcription
factor binding" evidence=IPI] [GO:0016581 "NuRD complex"
evidence=ISS] [GO:0040027 "negative regulation of vulval
development" evidence=IMP] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR002464 InterPro:IPR012957 InterPro:IPR012958
InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271 Pfam:PF00628
Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0009792 GO:GO:0040007 GO:GO:0002119 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 GO:GO:0000122 GO:GO:0040035
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 InterPro:IPR019786 PROSITE:PS01359 GO:GO:0040027
InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 GO:GO:0016581 InterPro:IPR023780
PROSITE:PS00598 GeneTree:ENSGT00560000076896 InterPro:IPR009462
InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465 KO:K11643
GO:GO:0048557 HSSP:Q14839 EMBL:AF308445 EMBL:FO080294 PIR:T34239
RefSeq:NP_504523.1 UniGene:Cel.16862 ProteinModelPortal:G5EBZ4
SMR:G5EBZ4 IntAct:G5EBZ4 STRING:Q19815 EnsemblMetazoa:F26F12.7
GeneID:178970 KEGG:cel:CELE_F26F12.7 CTD:178970 WormBase:F26F12.7
OMA:VTQDATE NextBio:903342 Uniprot:G5EBZ4
Length = 1829
Score = 1157 (412.3 bits), Expect = 5.5e-145, Sum P(6) = 5.5e-145
Identities = 260/596 (43%), Positives = 357/596 (59%)
Query: 694 WEKLDEPALEKYSHLTDLFVQFERQTLKKDASEDELPRGKGDCQQSEIVALTE-QPEELK 752
W+ + E + R+ EDE + K + + +I E QP+ +
Sbjct: 539 WQHRESKLNEDIPKNVQKMIAKHREAKGLPPKEDEKKKKKRE--KIDIRKKYEVQPDYVT 596
Query: 753 --GGALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLV 810
GG L P+QLE LNWLR CW + ILADEMGLGKTV + F+ SL E K P L+
Sbjct: 597 ETGGKLHPYQLEGLNWLRHCWSNGTDAILADEMGLGKTVQSLTFLYSLMKEGHCKGPFLI 656
Query: 811 LVPLSTMPNWLAEFALWAPNLNVVEYHGCAKARAIIRQYEWH------ASDPDNLNKKTS 864
PLST+ NW E W P+ VV Y G AR ++R++E+ S P KT+
Sbjct: 657 AAPLSTIINWEREAEQWCPDFYVVTYVGLRDARVVLREHEFSFVEGAVRSGPKASKMKTT 716
Query: 865 -SYKFNVLLTTYEMILADSSHLRGVPWEVLVVDEGHRXXXXXXXXXXXXXXXXXQHRVLL 923
+ KF+VLLT+YE I D + L + W LVVDE HR +RVLL
Sbjct: 717 ENMKFHVLLTSYETINMDKTILSSIEWGALVVDEAHRLKNNQSLFFKNLNEYTIHYRVLL 776
Query: 924 TGTPLQNNIGEMYNLLNFLQPASFPSLSSFEEKFNDLTTTQKVEELKKLVAPHMLRRLKK 983
TGTPLQNN+ E+++LLNFL F L +F +FN+++ ++E+L L+ PHMLRRLK
Sbjct: 777 TGTPLQNNLEELFHLLNFLSKERFNQLEAFTAEFNEISKEDQIEKLHNLLGPHMLRRLKA 836
Query: 984 DAMQNIPPKTERMVPVELSSIQAEYYRAMLTKNYQILRNIGKGVAQQSMLNIVMQLRKVC 1043
D + +P K+E +V VELS++Q ++Y+ +LT+N+ L N+ G Q S++N++M+L+K C
Sbjct: 837 DVLTGMPSKSELIVRVELSAMQKKWYKNILTRNFDAL-NVKNGGTQMSLMNVLMELKKCC 895
Query: 1044 NHPYLIPGTE---PDSGSVEFLHEMRIKASAKLTLLHSMLKVLYKEGHRVLIFSQMTKLL 1100
NHPYL E P + + IK S K LL ML+ L GHRVLIFSQMT++L
Sbjct: 896 NHPYLFVKAELEAPKEKNGMYEGTALIKNSGKFVLLQKMLRKLKDGGHRVLIFSQMTRML 955
Query: 1101 DILEDYLNIEFGPKTYERVDGSVSVGDRQAAITRFNQDKSR-FVFLLSTRSCGLGINLAT 1159
DI+ED E G + YER+DGS+ RQ AI R+N ++ F+FLLSTR+ GLGINLAT
Sbjct: 956 DIMEDLCEYE-GYR-YERIDGSIMGQMRQDAIDRYNAPGAQQFIFLLSTRAGGLGINLAT 1013
Query: 1160 ADTVIIYDSDFNPHADIQAMNRAHRIGQSKRLLVYRLVVRASVEERILQLAKKKLMLDQL 1219
ADTVIIYDSD+NPH DIQA +RAHR+GQ ++++YR V + SVEE+I +AKKK++L+ L
Sbjct: 1014 ADTVIIYDSDWNPHNDIQAFSRAHRLGQKHKVMIYRFVTKKSVEEKITSVAKKKMLLNHL 1073
Query: 1220 FVN-----KSG---SQKEVEDILRWGTEELFN-DSPGINGKDMGENNTSIEEAVRD 1266
V K G S+ E++D+LRWGTEELF+ D G+ + + +E V D
Sbjct: 1074 VVRAGLGGKEGKTMSKTELDDVLRWGTEELFSEDLDAAEGEGSEKKGAAAQEIVWD 1129
Score = 144 (55.7 bits), Expect = 5.5e-145, Sum P(6) = 5.5e-145
Identities = 36/112 (32%), Positives = 52/112 (46%)
Query: 36 EENLVTS-ESPRNTPSAKR--RLKNEINADRSSTKKKGNDGYYYE----CVICDLGGNLL 88
E++LV E R +A+R + K + A R++ K K G E C C G LL
Sbjct: 210 EDDLVKDKEDARIKRAAEREEKKKGALEAARAAKKAKLEKGEEAENNDYCEECKQDGELL 269
Query: 89 CCDSCPRTYHLQCLDPPLKRIPNGKWQCPKCTQKNDQL---KPISNLDSISK 137
CD+CPR YH C+D ++ P G W C C + ++ +P D K
Sbjct: 270 LCDTCPRAYHTVCIDENMEEPPEGDWSCAHCIEHGPEVVKEEPAKQNDEFCK 321
Score = 136 (52.9 bits), Expect = 3.8e-144, Sum P(6) = 3.8e-144
Identities = 27/68 (39%), Positives = 38/68 (55%)
Query: 69 KGNDGYYYECVICDLGGNLLCCDSCPRTYHLQCLDPPLKRIPNGK-WQCPKCTQKNDQLK 127
K ND + C IC NLL CDSC ++H C+DPPL +P + W CP+C + +K
Sbjct: 314 KQNDEF---CKICKETENLLLCDSCVCSFHAYCIDPPLTEVPKEETWSCPRC----ETVK 366
Query: 128 PISNLDSI 135
P ++ I
Sbjct: 367 PEHKIEKI 374
Score = 103 (41.3 bits), Expect = 1.5e-14, Sum P(5) = 1.5e-14
Identities = 38/146 (26%), Positives = 71/146 (48%)
Query: 1211 KKKLMLDQLFVNKSGSQKEVEDILRWGTEELFND---SPGINGKDMGE--NNTSIEEAVR 1265
K K+M+ + FV K ++++ + + + L N G+ GK+ G+ + T +++ +R
Sbjct: 1042 KHKVMIYR-FVTKKSVEEKITSVAK--KKMLLNHLVVRAGLGGKE-GKTMSKTELDDVLR 1097
Query: 1266 ----DLEQKHRKRGGGLGDVYQDKCTEGSTKIVWDENAIARLLDRSNLQ---SGSTDLAE 1318
+L + G G +K + +IVWD+ A+ LLDRSN + +G +
Sbjct: 1098 WGTEELFSEDLDAAEGEGS---EKKGAAAQEIVWDDAAVDALLDRSNKEETPAGEDGEEK 1154
Query: 1319 GDLENDMLGSVKATEWNEETTEDQAE 1344
+ +N+ L S K + + TE Q E
Sbjct: 1155 AEWQNEYLSSFKVASYQTKETEGQEE 1180
Score = 99 (39.9 bits), Expect = 5.5e-145, Sum P(6) = 5.5e-145
Identities = 27/96 (28%), Positives = 43/96 (44%)
Query: 630 PESQLKVLAKRKLEN--YKAKYGTTVINICDERWKQPQRVISLRSSKDGTREAFVKWTGL 687
PE + V ++ +N YK + I E W Q R+I+ +S ++ VKW L
Sbjct: 456 PEFEESVTSRHHSDNDPYKLRERFYQYGIKPE-WMQIHRIINHQSYAKSQQDYLVKWKEL 514
Query: 688 PYDECTWEKLDEPALEKYSHLTDLFVQFERQTLKKD 723
YD+ TWE+ D+ + Y + Q L +D
Sbjct: 515 SYDQATWER-DDSNIANYEEAIIKYWQHRESKLNED 549
Score = 61 (26.5 bits), Expect = 1.8e-137, Sum P(5) = 1.8e-137
Identities = 17/46 (36%), Positives = 23/46 (50%)
Query: 658 DERWKQPQRVISLRSSKDGTREAFVKWTGLPYDECTWEKLDEPALE 703
D+ +P R + R RE FVKW L Y +C+W + E LE
Sbjct: 397 DDAMLKPPRKMEPRRE----REFFVKWKYLSYWQCSW--VSEMLLE 436
Score = 61 (26.5 bits), Expect = 1.2e-05, Sum P(5) = 1.2e-05
Identities = 27/110 (24%), Positives = 50/110 (45%)
Query: 526 AVNGKVQDESAVSTEDLGE-RNDKMVVEDADVSLRDNEGLTVSEIHITCESTDKDVDVGK 584
A NG Q S + + E + + M EDA ++ G T SE ES +++ V +
Sbjct: 1415 AANGSAQGSSRSTPKPKEEPKEEPMEKEDATETVN---GAT-SEPATDAES-EQNAPVDE 1469
Query: 585 KTSGSVAKRVQEPAVTESAQVKGKAVSYEFLVKWVGKSNIHNSWIPESQL 634
AK +E + E+ + + S++F + G + +H+ W E ++
Sbjct: 1470 PMDTDEAKEPKEEPI-ETEKPRAARPSFKFNICDGGFTELHSLWANEEKV 1518
Score = 56 (24.8 bits), Expect = 1.2e-05, Sum P(5) = 1.2e-05
Identities = 28/113 (24%), Positives = 50/113 (44%)
Query: 423 ISATATDD--RHSDDFLVSENHNKILEENLACDTDLDAEVTENLAELSPNVIRSSDEECM 480
+S T DD R + L SE+ + E E+ + A + + RS+ EE
Sbjct: 1087 MSKTELDDVLRWGTEELFSEDLDAAEGEGSEKKGAAAQEIVWDDAAVDALLDRSNKEETP 1146
Query: 481 KNDIGVDRIQVYRRSVTKECKV----TKECKG-----ENAIDLLREDDKDSDP 524
+ G ++ + ++ KV TKE +G E ++++ED+K+ DP
Sbjct: 1147 AGEDGEEKAE-WQNEYLSSFKVASYQTKETEGQEEEEEEETEVIKEDEKEPDP 1198
Score = 48 (22.0 bits), Expect = 5.5e-145, Sum P(6) = 5.5e-145
Identities = 11/24 (45%), Positives = 13/24 (54%)
Query: 613 EFLVKWVGKSNIHNSWIPESQLKV 636
EF VKW S SW+ E L+V
Sbjct: 414 EFFVKWKYLSYWQCSWVSEMLLEV 437
Score = 44 (20.5 bits), Expect = 1.5e-134, Sum P(6) = 1.5e-134
Identities = 16/73 (21%), Positives = 32/73 (43%)
Query: 238 ADTKFHPAEEVLPHSQVTKSEQNDEVPVEKHEKSSTNGSSGIKFVLAIGASERDRKRKPE 297
A TK A S S+Q E +++ E+ + + A+ER+ K+K
Sbjct: 176 APTKTRSARRKRRDSDAPDSDQEFEAFIKQQEQLEDDLVKDKEDARIKRAAEREEKKKGA 235
Query: 298 VKDEDSQKKLRVD 310
++ + KK +++
Sbjct: 236 LEAARAAKKAKLE 248
Score = 44 (20.5 bits), Expect = 8.4e-09, Sum P(5) = 8.4e-09
Identities = 7/23 (30%), Positives = 14/23 (60%)
Query: 1295 WDENAIARLLDRSNLQSGSTDLA 1317
W +N + R D N+++G T ++
Sbjct: 861 WYKNILTRNFDALNVKNGGTQMS 883
Score = 41 (19.5 bits), Expect = 5.5e-145, Sum P(6) = 5.5e-145
Identities = 9/19 (47%), Positives = 11/19 (57%)
Query: 1355 AENSERKEENAVTGIEENE 1373
+EN ER EE+ EE E
Sbjct: 1743 SENGERMEEDEPVEAEEEE 1761
Score = 41 (19.5 bits), Expect = 2.2e-135, Sum P(5) = 2.2e-135
Identities = 13/40 (32%), Positives = 19/40 (47%)
Query: 267 KHEKSSTNGSSGIKFVLAIGASERDRKRKPEVKDEDSQKK 306
+H +S N K V + A R+ K P +DE +KK
Sbjct: 540 QHRESKLNEDIP-KNVQKMIAKHREAKGLPPKEDEKKKKK 578
Score = 40 (19.1 bits), Expect = 5.5e-145, Sum P(6) = 5.5e-145
Identities = 10/37 (27%), Positives = 20/37 (54%)
Query: 1238 TEELFNDSPGINGKDMGENNTSIEEAVRDLEQKHRKR 1274
T++ +D+ G D G+ S E+ D ++K ++R
Sbjct: 1247 TQDDDDDNESYRGSDNGDGLNSDED---DYDEKKKRR 1280
Score = 40 (19.1 bits), Expect = 2.9e-135, Sum P(5) = 2.9e-135
Identities = 20/75 (26%), Positives = 37/75 (49%)
Query: 613 EFLVK-WVGKSNIHNSWIPESQLKVLAKRKLENYKAKYGTTVINICDERWKQPQRVISLR 671
E ++K W + + N IP++ K++AK + +AK G DE+ K+ + I +R
Sbjct: 533 EAIIKYWQHRESKLNEDIPKNVQKMIAKHR----EAK-GLPPKE--DEKKKKKREKIDIR 585
Query: 672 SSKDGTREAFVKWTG 686
+ + +V TG
Sbjct: 586 KKYE-VQPDYVTETG 599
Score = 40 (19.1 bits), Expect = 0.00090, Sum P(2) = 0.00090
Identities = 12/53 (22%), Positives = 19/53 (35%)
Query: 174 SNKGKSVLALGVKSLEKSLDSSQVDVSCSTKPENTSAGVPVEGSSSCPNDDDE 226
S + VL+ V S + S D + + E + P P D+ E
Sbjct: 1774 SAEAPPVLSAEVNS-DDSNDVPSTSAAAAVSSETAADAEPASAEDQAPTDEPE 1825
Score = 37 (18.1 bits), Expect = 1.5e-144, Sum P(6) = 1.5e-144
Identities = 6/23 (26%), Positives = 15/23 (65%)
Query: 1336 EETTEDQAESPVAAVDDASAENS 1358
++ T+D AE+P + ++++S
Sbjct: 1768 DDETQDSAEAPPVLSAEVNSDDS 1790
>UNIPROTKB|G5EBZ4 [details] [associations]
symbol:let-418 "Protein let-418" species:6239
"Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR002464 InterPro:IPR012957 InterPro:IPR012958
InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271 Pfam:PF00628
Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0009792 GO:GO:0040007 GO:GO:0002119 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 GO:GO:0000122 GO:GO:0040035
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 InterPro:IPR019786 PROSITE:PS01359 GO:GO:0040027
InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 GO:GO:0016581 InterPro:IPR023780
PROSITE:PS00598 GeneTree:ENSGT00560000076896 InterPro:IPR009462
InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465 KO:K11643
GO:GO:0048557 HSSP:Q14839 EMBL:AF308445 EMBL:FO080294 PIR:T34239
RefSeq:NP_504523.1 UniGene:Cel.16862 ProteinModelPortal:G5EBZ4
SMR:G5EBZ4 IntAct:G5EBZ4 STRING:Q19815 EnsemblMetazoa:F26F12.7
GeneID:178970 KEGG:cel:CELE_F26F12.7 CTD:178970 WormBase:F26F12.7
OMA:VTQDATE NextBio:903342 Uniprot:G5EBZ4
Length = 1829
Score = 1157 (412.3 bits), Expect = 5.5e-145, Sum P(6) = 5.5e-145
Identities = 260/596 (43%), Positives = 357/596 (59%)
Query: 694 WEKLDEPALEKYSHLTDLFVQFERQTLKKDASEDELPRGKGDCQQSEIVALTE-QPEELK 752
W+ + E + R+ EDE + K + + +I E QP+ +
Sbjct: 539 WQHRESKLNEDIPKNVQKMIAKHREAKGLPPKEDEKKKKKRE--KIDIRKKYEVQPDYVT 596
Query: 753 --GGALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLV 810
GG L P+QLE LNWLR CW + ILADEMGLGKTV + F+ SL E K P L+
Sbjct: 597 ETGGKLHPYQLEGLNWLRHCWSNGTDAILADEMGLGKTVQSLTFLYSLMKEGHCKGPFLI 656
Query: 811 LVPLSTMPNWLAEFALWAPNLNVVEYHGCAKARAIIRQYEWH------ASDPDNLNKKTS 864
PLST+ NW E W P+ VV Y G AR ++R++E+ S P KT+
Sbjct: 657 AAPLSTIINWEREAEQWCPDFYVVTYVGLRDARVVLREHEFSFVEGAVRSGPKASKMKTT 716
Query: 865 -SYKFNVLLTTYEMILADSSHLRGVPWEVLVVDEGHRXXXXXXXXXXXXXXXXXQHRVLL 923
+ KF+VLLT+YE I D + L + W LVVDE HR +RVLL
Sbjct: 717 ENMKFHVLLTSYETINMDKTILSSIEWGALVVDEAHRLKNNQSLFFKNLNEYTIHYRVLL 776
Query: 924 TGTPLQNNIGEMYNLLNFLQPASFPSLSSFEEKFNDLTTTQKVEELKKLVAPHMLRRLKK 983
TGTPLQNN+ E+++LLNFL F L +F +FN+++ ++E+L L+ PHMLRRLK
Sbjct: 777 TGTPLQNNLEELFHLLNFLSKERFNQLEAFTAEFNEISKEDQIEKLHNLLGPHMLRRLKA 836
Query: 984 DAMQNIPPKTERMVPVELSSIQAEYYRAMLTKNYQILRNIGKGVAQQSMLNIVMQLRKVC 1043
D + +P K+E +V VELS++Q ++Y+ +LT+N+ L N+ G Q S++N++M+L+K C
Sbjct: 837 DVLTGMPSKSELIVRVELSAMQKKWYKNILTRNFDAL-NVKNGGTQMSLMNVLMELKKCC 895
Query: 1044 NHPYLIPGTE---PDSGSVEFLHEMRIKASAKLTLLHSMLKVLYKEGHRVLIFSQMTKLL 1100
NHPYL E P + + IK S K LL ML+ L GHRVLIFSQMT++L
Sbjct: 896 NHPYLFVKAELEAPKEKNGMYEGTALIKNSGKFVLLQKMLRKLKDGGHRVLIFSQMTRML 955
Query: 1101 DILEDYLNIEFGPKTYERVDGSVSVGDRQAAITRFNQDKSR-FVFLLSTRSCGLGINLAT 1159
DI+ED E G + YER+DGS+ RQ AI R+N ++ F+FLLSTR+ GLGINLAT
Sbjct: 956 DIMEDLCEYE-GYR-YERIDGSIMGQMRQDAIDRYNAPGAQQFIFLLSTRAGGLGINLAT 1013
Query: 1160 ADTVIIYDSDFNPHADIQAMNRAHRIGQSKRLLVYRLVVRASVEERILQLAKKKLMLDQL 1219
ADTVIIYDSD+NPH DIQA +RAHR+GQ ++++YR V + SVEE+I +AKKK++L+ L
Sbjct: 1014 ADTVIIYDSDWNPHNDIQAFSRAHRLGQKHKVMIYRFVTKKSVEEKITSVAKKKMLLNHL 1073
Query: 1220 FVN-----KSG---SQKEVEDILRWGTEELFN-DSPGINGKDMGENNTSIEEAVRD 1266
V K G S+ E++D+LRWGTEELF+ D G+ + + +E V D
Sbjct: 1074 VVRAGLGGKEGKTMSKTELDDVLRWGTEELFSEDLDAAEGEGSEKKGAAAQEIVWD 1129
Score = 144 (55.7 bits), Expect = 5.5e-145, Sum P(6) = 5.5e-145
Identities = 36/112 (32%), Positives = 52/112 (46%)
Query: 36 EENLVTS-ESPRNTPSAKR--RLKNEINADRSSTKKKGNDGYYYE----CVICDLGGNLL 88
E++LV E R +A+R + K + A R++ K K G E C C G LL
Sbjct: 210 EDDLVKDKEDARIKRAAEREEKKKGALEAARAAKKAKLEKGEEAENNDYCEECKQDGELL 269
Query: 89 CCDSCPRTYHLQCLDPPLKRIPNGKWQCPKCTQKNDQL---KPISNLDSISK 137
CD+CPR YH C+D ++ P G W C C + ++ +P D K
Sbjct: 270 LCDTCPRAYHTVCIDENMEEPPEGDWSCAHCIEHGPEVVKEEPAKQNDEFCK 321
Score = 136 (52.9 bits), Expect = 3.8e-144, Sum P(6) = 3.8e-144
Identities = 27/68 (39%), Positives = 38/68 (55%)
Query: 69 KGNDGYYYECVICDLGGNLLCCDSCPRTYHLQCLDPPLKRIPNGK-WQCPKCTQKNDQLK 127
K ND + C IC NLL CDSC ++H C+DPPL +P + W CP+C + +K
Sbjct: 314 KQNDEF---CKICKETENLLLCDSCVCSFHAYCIDPPLTEVPKEETWSCPRC----ETVK 366
Query: 128 PISNLDSI 135
P ++ I
Sbjct: 367 PEHKIEKI 374
Score = 103 (41.3 bits), Expect = 1.5e-14, Sum P(5) = 1.5e-14
Identities = 38/146 (26%), Positives = 71/146 (48%)
Query: 1211 KKKLMLDQLFVNKSGSQKEVEDILRWGTEELFND---SPGINGKDMGE--NNTSIEEAVR 1265
K K+M+ + FV K ++++ + + + L N G+ GK+ G+ + T +++ +R
Sbjct: 1042 KHKVMIYR-FVTKKSVEEKITSVAK--KKMLLNHLVVRAGLGGKE-GKTMSKTELDDVLR 1097
Query: 1266 ----DLEQKHRKRGGGLGDVYQDKCTEGSTKIVWDENAIARLLDRSNLQ---SGSTDLAE 1318
+L + G G +K + +IVWD+ A+ LLDRSN + +G +
Sbjct: 1098 WGTEELFSEDLDAAEGEGS---EKKGAAAQEIVWDDAAVDALLDRSNKEETPAGEDGEEK 1154
Query: 1319 GDLENDMLGSVKATEWNEETTEDQAE 1344
+ +N+ L S K + + TE Q E
Sbjct: 1155 AEWQNEYLSSFKVASYQTKETEGQEE 1180
Score = 99 (39.9 bits), Expect = 5.5e-145, Sum P(6) = 5.5e-145
Identities = 27/96 (28%), Positives = 43/96 (44%)
Query: 630 PESQLKVLAKRKLEN--YKAKYGTTVINICDERWKQPQRVISLRSSKDGTREAFVKWTGL 687
PE + V ++ +N YK + I E W Q R+I+ +S ++ VKW L
Sbjct: 456 PEFEESVTSRHHSDNDPYKLRERFYQYGIKPE-WMQIHRIINHQSYAKSQQDYLVKWKEL 514
Query: 688 PYDECTWEKLDEPALEKYSHLTDLFVQFERQTLKKD 723
YD+ TWE+ D+ + Y + Q L +D
Sbjct: 515 SYDQATWER-DDSNIANYEEAIIKYWQHRESKLNED 549
Score = 61 (26.5 bits), Expect = 1.8e-137, Sum P(5) = 1.8e-137
Identities = 17/46 (36%), Positives = 23/46 (50%)
Query: 658 DERWKQPQRVISLRSSKDGTREAFVKWTGLPYDECTWEKLDEPALE 703
D+ +P R + R RE FVKW L Y +C+W + E LE
Sbjct: 397 DDAMLKPPRKMEPRRE----REFFVKWKYLSYWQCSW--VSEMLLE 436
Score = 61 (26.5 bits), Expect = 1.2e-05, Sum P(5) = 1.2e-05
Identities = 27/110 (24%), Positives = 50/110 (45%)
Query: 526 AVNGKVQDESAVSTEDLGE-RNDKMVVEDADVSLRDNEGLTVSEIHITCESTDKDVDVGK 584
A NG Q S + + E + + M EDA ++ G T SE ES +++ V +
Sbjct: 1415 AANGSAQGSSRSTPKPKEEPKEEPMEKEDATETVN---GAT-SEPATDAES-EQNAPVDE 1469
Query: 585 KTSGSVAKRVQEPAVTESAQVKGKAVSYEFLVKWVGKSNIHNSWIPESQL 634
AK +E + E+ + + S++F + G + +H+ W E ++
Sbjct: 1470 PMDTDEAKEPKEEPI-ETEKPRAARPSFKFNICDGGFTELHSLWANEEKV 1518
Score = 56 (24.8 bits), Expect = 1.2e-05, Sum P(5) = 1.2e-05
Identities = 28/113 (24%), Positives = 50/113 (44%)
Query: 423 ISATATDD--RHSDDFLVSENHNKILEENLACDTDLDAEVTENLAELSPNVIRSSDEECM 480
+S T DD R + L SE+ + E E+ + A + + RS+ EE
Sbjct: 1087 MSKTELDDVLRWGTEELFSEDLDAAEGEGSEKKGAAAQEIVWDDAAVDALLDRSNKEETP 1146
Query: 481 KNDIGVDRIQVYRRSVTKECKV----TKECKG-----ENAIDLLREDDKDSDP 524
+ G ++ + ++ KV TKE +G E ++++ED+K+ DP
Sbjct: 1147 AGEDGEEKAE-WQNEYLSSFKVASYQTKETEGQEEEEEEETEVIKEDEKEPDP 1198
Score = 48 (22.0 bits), Expect = 5.5e-145, Sum P(6) = 5.5e-145
Identities = 11/24 (45%), Positives = 13/24 (54%)
Query: 613 EFLVKWVGKSNIHNSWIPESQLKV 636
EF VKW S SW+ E L+V
Sbjct: 414 EFFVKWKYLSYWQCSWVSEMLLEV 437
Score = 44 (20.5 bits), Expect = 1.5e-134, Sum P(6) = 1.5e-134
Identities = 16/73 (21%), Positives = 32/73 (43%)
Query: 238 ADTKFHPAEEVLPHSQVTKSEQNDEVPVEKHEKSSTNGSSGIKFVLAIGASERDRKRKPE 297
A TK A S S+Q E +++ E+ + + A+ER+ K+K
Sbjct: 176 APTKTRSARRKRRDSDAPDSDQEFEAFIKQQEQLEDDLVKDKEDARIKRAAEREEKKKGA 235
Query: 298 VKDEDSQKKLRVD 310
++ + KK +++
Sbjct: 236 LEAARAAKKAKLE 248
Score = 44 (20.5 bits), Expect = 8.4e-09, Sum P(5) = 8.4e-09
Identities = 7/23 (30%), Positives = 14/23 (60%)
Query: 1295 WDENAIARLLDRSNLQSGSTDLA 1317
W +N + R D N+++G T ++
Sbjct: 861 WYKNILTRNFDALNVKNGGTQMS 883
Score = 41 (19.5 bits), Expect = 5.5e-145, Sum P(6) = 5.5e-145
Identities = 9/19 (47%), Positives = 11/19 (57%)
Query: 1355 AENSERKEENAVTGIEENE 1373
+EN ER EE+ EE E
Sbjct: 1743 SENGERMEEDEPVEAEEEE 1761
Score = 41 (19.5 bits), Expect = 2.2e-135, Sum P(5) = 2.2e-135
Identities = 13/40 (32%), Positives = 19/40 (47%)
Query: 267 KHEKSSTNGSSGIKFVLAIGASERDRKRKPEVKDEDSQKK 306
+H +S N K V + A R+ K P +DE +KK
Sbjct: 540 QHRESKLNEDIP-KNVQKMIAKHREAKGLPPKEDEKKKKK 578
Score = 40 (19.1 bits), Expect = 5.5e-145, Sum P(6) = 5.5e-145
Identities = 10/37 (27%), Positives = 20/37 (54%)
Query: 1238 TEELFNDSPGINGKDMGENNTSIEEAVRDLEQKHRKR 1274
T++ +D+ G D G+ S E+ D ++K ++R
Sbjct: 1247 TQDDDDDNESYRGSDNGDGLNSDED---DYDEKKKRR 1280
Score = 40 (19.1 bits), Expect = 2.9e-135, Sum P(5) = 2.9e-135
Identities = 20/75 (26%), Positives = 37/75 (49%)
Query: 613 EFLVK-WVGKSNIHNSWIPESQLKVLAKRKLENYKAKYGTTVINICDERWKQPQRVISLR 671
E ++K W + + N IP++ K++AK + +AK G DE+ K+ + I +R
Sbjct: 533 EAIIKYWQHRESKLNEDIPKNVQKMIAKHR----EAK-GLPPKE--DEKKKKKREKIDIR 585
Query: 672 SSKDGTREAFVKWTG 686
+ + +V TG
Sbjct: 586 KKYE-VQPDYVTETG 599
Score = 40 (19.1 bits), Expect = 0.00090, Sum P(2) = 0.00090
Identities = 12/53 (22%), Positives = 19/53 (35%)
Query: 174 SNKGKSVLALGVKSLEKSLDSSQVDVSCSTKPENTSAGVPVEGSSSCPNDDDE 226
S + VL+ V S + S D + + E + P P D+ E
Sbjct: 1774 SAEAPPVLSAEVNS-DDSNDVPSTSAAAAVSSETAADAEPASAEDQAPTDEPE 1825
Score = 37 (18.1 bits), Expect = 1.5e-144, Sum P(6) = 1.5e-144
Identities = 6/23 (26%), Positives = 15/23 (65%)
Query: 1336 EETTEDQAESPVAAVDDASAENS 1358
++ T+D AE+P + ++++S
Sbjct: 1768 DDETQDSAEAPPVLSAEVNSDDS 1790
>UNIPROTKB|F1NH79 [details] [associations]
symbol:CHD4 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005813
"centrosome" evidence=IEA] [GO:0008134 "transcription factor
binding" evidence=IEA] [GO:0016581 "NuRD complex" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012957 InterPro:IPR012958 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00628 Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690
PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184
SMART:SM00249 SMART:SM00298 Pfam:PF00385 GO:GO:0005524
GO:GO:0005737 GO:GO:0005813 GO:GO:0006355 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 InterPro:IPR019786
PROSITE:PS01359 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GO:GO:0016581 InterPro:IPR023780 GeneTree:ENSGT00560000076896
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
EMBL:AADN02061139 EMBL:AADN02061140 EMBL:AADN02061141
EMBL:AADN02061142 EMBL:AADN02061143 IPI:IPI00598956
Ensembl:ENSGALT00000023339 OMA:DGEHEHQ Uniprot:F1NH79
Length = 1895
Score = 1030 (367.6 bits), Expect = 1.1e-135, Sum P(6) = 1.1e-135
Identities = 243/551 (44%), Positives = 339/551 (61%)
Query: 742 VALTEQPE--ELKGGALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLY 799
V QPE ++ GG L P+QLE LNWLR W + + ILADEMGLGKTV F+ SLY
Sbjct: 680 VKYDRQPEYLDVTGGTLHPYQLEGLNWLRFSWAQGTDTILADEMGLGKTVQTAVFLYSLY 739
Query: 800 CEFKAKLPCLVLVPLSTMPNWLAEFALWAPNLNVVEYHGCAKARAIIRQYEWHASD---- 855
E +K P LV PLST+ NW EF +WAP++ VV Y G +RAIIR+ E+ D
Sbjct: 740 KEGHSKGPFLVSAPLSTIINWEREFEMWAPDMYVVTYVGDKDSRAIIRENEFTFEDNAIR 799
Query: 856 ---PDNLNKKTSSYKFNVLLTTYEMILADSSHLRGVPWEVLVVDEGHRXXXXXXXXXXXX 912
+ KK ++ KF+VLLT+YE+I D + L + W L+VDE HR
Sbjct: 800 GGKKASRMKKEAAVKFHVLLTSYELITIDMAILGSIDWACLIVDEAHRLKNNQSKFFRVL 859
Query: 913 XXXXXQHRVLLTGTPLQNNIGEMYNLLNFLQPASFPSLSSFEEKFNDLTTTQKVEELKKL 972
QH++LLTGTPLQNN+ E+++LLNFL P F +L F E+F D+ ++++L +
Sbjct: 860 NGYSLQHKLLLTGTPLQNNLEELFHLLNFLTPERFHNLEGFLEEFADIAKEDQIKKLHDM 919
Query: 973 VAPHMLRRLKKDAMQNIPPKTERMVPVELSSIQAEYYRAMLTKNYQILRNIGKGVAQQSM 1032
+ PHMLRRLK D +N+P KTE +V VELS +Q +YY+ +LT+N++ L G G Q S+
Sbjct: 920 LGPHMLRRLKADVFKNMPSKTELIVRVELSPMQKKYYKYILTRNFEALNARGGG-NQVSL 978
Query: 1033 LNIVMQLRKVCNHPYLIP--GTE-PDSGSVEFLHEMRIKASAKLTLLHSMLKVLYKEGHR 1089
LN+VM L+K CNHPYL P E P + + I+AS KL LL MLK L + GHR
Sbjct: 979 LNVVMDLKKCCNHPYLFPVAAMEAPKMPNGMYDGSALIRASGKLLLLQKMLKNLKEGGHR 1038
Query: 1090 VLIFSQMTKLLDILEDYLNIEFGPKTYERVDGSVSVGDRQAAITRFNQDKSR-FVFLLST 1148
VLIFSQMTK+LD+LED+L E G K YER+DG ++ RQ AI RFN ++ F FLLST
Sbjct: 1039 VLIFSQMTKMLDLLEDFLEHE-GYK-YERIDGGITGNMRQEAIDRFNAPGAQGFCFLLST 1096
Query: 1149 RSCG--LGINLATADTVIIYDSDFNPHADIQAMNRAHRIGQSKRLLVYRLVVRA-SVEER 1205
R+ G L L +++ + DS + + +RAHR+GQ+K++ R V ++ S
Sbjct: 1097 RAGGPCLWSPLRSSERNV--DSSLSRKTMQKTYSRAHRLGQNKKVNDIRFVTKSISGRSA 1154
Query: 1206 ILQLAKKKLMLDQLFV----NKSGS--QKEVEDILRWGTEELFNDSPGINGKDM-GENNT 1258
Q+A+K++ML L V +K+GS ++E++DIL++GTEELF D G + GE+++
Sbjct: 1155 SSQVAQKEMMLTHLVVRPGGSKTGSMSKQELDDILKFGTEELFKDEATEGGDNKEGEDSS 1214
Query: 1259 SIEEAVRDLEQ 1269
I + +E+
Sbjct: 1215 VIHYDDKAIER 1225
Score = 373 (136.4 bits), Expect = 7.9e-48, Sum P(6) = 7.9e-48
Identities = 131/416 (31%), Positives = 185/416 (44%)
Query: 661 WKQPQRVISLRSSKDGTREAFVKWTGLPYDECTWEKLD----EPALEK--YSHLTDLFVQ 714
W R+++ K G +KW LPYD+ +WE D + L K Y + +L
Sbjct: 591 WMMIHRILNHSVDKKGNVHYLIKWRDLPYDQASWESEDVDIQDYDLYKQAYWNHRELMRG 650
Query: 715 FERQTLKK--DASEDELPRGKGDCQQSEIVALTEQPE--ELKGGALFPHQLEALNWLRKC 770
E + KK +L R V QPE ++ GG L P+QLE LNWLR
Sbjct: 651 EEGRPGKKLKKVKMRKLERPPETPTVDPTVKYDRQPEYLDVTGGTLHPYQLEGLNWLRFS 710
Query: 771 WHKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLSTMPNWLAEFALWAPN 830
W + + ILADEMGLGKTV F+ SLY E +K P LV PLST+ NW EF +WAP+
Sbjct: 711 WAQGTDTILADEMGLGKTVQTAVFLYSLYKEGHSKGPFLVSAPLSTIINWEREFEMWAPD 770
Query: 831 LNVVEYHGCAKARAIIRQYEWHASDPD-NLNKKTSSYKFNVLLTTYEMILADSSHLRGVP 889
+ VV Y G +RAIIR+ E+ D KK S K + + +L S L +
Sbjct: 771 MYVVTYVGDKDSRAIIRENEFTFEDNAIRGGKKASRMKKEAAVKFH--VLLTSYEL--IT 826
Query: 890 WEVLVVDEGHRXXXXXXXXXXXXXXXXXQHRVLLTGTPLQNNI---GE--MYNLLNFLQP 944
++ ++ RVL G LQ+ + G NL
Sbjct: 827 IDMAILGSIDWACLIVDEAHRLKNNQSKFFRVL-NGYSLQHKLLLTGTPLQNNLEELFHL 885
Query: 945 ASFPSLSSFE--EKF-NDLTTTQKVEELKKLVAPHMLRRLKKDAMQNIPPKTERMVPVEL 1001
+F + F E F + K +++KKL H + L ++ + + +P +
Sbjct: 886 LNFLTPERFHNLEGFLEEFADIAKEDQIKKL---HDM--LGPHMLRRLKADVFKNMPSKT 940
Query: 1002 SSIQAEYYRAMLTKNYQIL--RNI----GKGVAQQ-SMLNIVMQLRKVCNHPYLIP 1050
I M K Y+ + RN +G Q S+LN+VM L+K CNHPYL P
Sbjct: 941 ELIVRVELSPMQKKYYKYILTRNFEALNARGGGNQVSLLNVVMDLKKCCNHPYLFP 996
Score = 192 (72.6 bits), Expect = 1.1e-135, Sum P(6) = 1.1e-135
Identities = 31/63 (49%), Positives = 42/63 (66%)
Query: 58 EINADRSSTKKKGNDGYYYECVICDLGGNLLCCDSCPRTYHLQCLDPPLKRIPNGKWQCP 117
EI D ++ +D + C +C GG LLCCD+CP +YH+ CL+PPL IPNG+W CP
Sbjct: 402 EILEDVVGDAEEEDDHHMEFCRVCKDGGELLCCDACPSSYHIHCLNPPLPEIPNGEWLCP 461
Query: 118 KCT 120
+CT
Sbjct: 462 RCT 464
Score = 182 (69.1 bits), Expect = 2.6e-132, Sum P(5) = 2.6e-132
Identities = 31/86 (36%), Positives = 48/86 (55%)
Query: 41 TSESPRNTPSAKRRLKNEINADRSSTKKKGNDGYYYE-CVICDLGGNLLCCDSCPRTYHL 99
TS S R+ K K + + S+ G + + + C +C GG ++ CD+CPR YH+
Sbjct: 305 TSRSSRSRKKLKAGKKKKKGEEDSTVAVDGYETDHQDYCEVCQQGGEIILCDTCPRAYHM 364
Query: 100 QCLDPPLKRIPNGKWQCPKCTQKNDQ 125
CLDP +++ P GKW CP C ++ Q
Sbjct: 365 VCLDPDMEKAPEGKWSCPHCEKEGIQ 390
Score = 79 (32.9 bits), Expect = 1.1e-135, Sum P(6) = 1.1e-135
Identities = 21/68 (30%), Positives = 32/68 (47%)
Query: 583 GKKTSGSVAKRVQE--PAVTESAQVKGKAVSYEFLVKWVGKSNIHNSWIPESQLKVLAKR 640
G+ G V R + P ++G+ +F VKW G S H SW+ E QL++ +
Sbjct: 481 GQPPVGPVPPRPPDADPNAPPPKPLEGRP-ERQFFVKWQGMSYWHCSWVSELQLELHCQV 539
Query: 641 KLENYKAK 648
NY+ K
Sbjct: 540 MFRNYQRK 547
Score = 76 (31.8 bits), Expect = 1.1e-135, Sum P(6) = 1.1e-135
Identities = 25/77 (32%), Positives = 43/77 (55%)
Query: 1277 GLGDVYQDKCTEG--------STKIVWDENAIARLLDRSNLQSGSTDLAEGDLENDMLGS 1328
G ++++D+ TEG S+ I +D+ AI RLLDR+ ++ T+L +G N+ L S
Sbjct: 1192 GTEELFKDEATEGGDNKEGEDSSVIHYDDKAIERLLDRNQDETEDTEL-QG--MNEYLSS 1248
Query: 1329 VKATEW---NEETTEDQ 1342
K ++ EE E++
Sbjct: 1249 FKVAQYVVREEEMGEEE 1265
Score = 72 (30.4 bits), Expect = 5.8e-135, Sum P(6) = 5.8e-135
Identities = 21/55 (38%), Positives = 28/55 (50%)
Query: 678 REAFVKWTGLPYDECTWEKLDEPALEKYSHLTDLFVQFERQTLKKDASEDELPRG 732
R+ FVKW G+ Y C+W + E LE H +F ++R K D DE P G
Sbjct: 511 RQFFVKWQGMSYWHCSW--VSELQLEL--HCQVMFRNYQR---KNDM--DEPPSG 556
Score = 69 (29.3 bits), Expect = 1.8e-10, Sum P(3) = 1.8e-10
Identities = 40/203 (19%), Positives = 76/203 (37%)
Query: 151 GVKSSGADK--VSQIFGNSILARKRSNKGKSVLAL-GVKSLEKSLDSSQVDVSCSTKPEN 207
GV G + V G L RK+ + + V + L + ++ ++ S P+
Sbjct: 1450 GVPREGLSRQHVLTRIGVMSLIRKKVQEFEHVNGRWSMPELAEIEENKKLSQPSSPSPKT 1509
Query: 208 TSAGVP--VEGSSSCPNDDDEKQLNASPTDSLADTKFHPAEEVLPHSQVTKSEQNDEVPV 265
+ P + ++ P E+ + A + A K E P +++ S + EVP+
Sbjct: 1510 PTPSTPGDTQPNTPAPVPPPEEGIKA---EEGASNK-EQGESAEPEKELSASANDTEVPM 1565
Query: 266 EKHEKSSTNGSSGIKFVLAIGASERDRKRK-PEVKDE-DSQKKLRVDXXXXXXXXXXXXX 323
E+ + + K + ++E D K++ PEVK+ D ++
Sbjct: 1566 EQCAQPAETAPQEAKS--PVNSTEADEKKEEPEVKERTDEPMEVESKGTSTDVEKVEDRA 1623
Query: 324 XXIGTLSPGTSKLHEKQRTNNDE 346
T P L EK +D+
Sbjct: 1624 PTENTSEPPVITLDEKDEKKDDD 1646
Score = 62 (26.9 bits), Expect = 2.0e-09, Sum P(4) = 2.0e-09
Identities = 35/166 (21%), Positives = 64/166 (38%)
Query: 507 KGENAIDLLREDDKDSDPVAVNGKVQDESAVSTEDLGERNDKMVVEDADVSLRDNEGLTV 566
+ ++ ++ D+K +P K + + + E G D VED E +
Sbjct: 1578 EAKSPVNSTEADEKKEEPEV---KERTDEPMEVESKGTSTDVEKVEDR----APTENTSE 1630
Query: 567 SEIHITCESTDKDVDVGKKTSGSVAKRVQEPAVTESAQVKGK-AVSYEFLVKWV--GKSN 623
+ IT + D+ D K+ V + ESA + K AV F+ G +
Sbjct: 1631 PPV-ITLDEKDEKKDDDKR---DVVMLQNGEMLKESADERHKKAVKQRFMFNIADGGFTE 1686
Query: 624 IHNSWIPESQLKVLAKRKLENYKAKYG----TTVINICDERWKQPQ 665
+H+ W E + + K+ E + ++ +IN RW+ Q
Sbjct: 1687 LHSLWQNEERAATVTKKTYEIWHRRHDYWLLAGIINHGYARWQDIQ 1732
Score = 55 (24.4 bits), Expect = 1.0e-11, Sum P(5) = 1.0e-11
Identities = 25/112 (22%), Positives = 52/112 (46%)
Query: 930 NNIGEMYNLLNFLQPASFPSLSSFEEKFNDLTTTQKVEE-LKKL-VAPHMLRRLKKDAMQ 987
N GE +++++ A L +++ D T Q + E L VA +++R + +
Sbjct: 1207 NKEGEDSSVIHYDDKAIERLLDRNQDETED-TELQGMNEYLSSFKVAQYVVREEEMGEEE 1265
Query: 988 NIPPKTERMVPVELSSIQAEYYRAMLTKNYQ-----ILRNIGKGVAQQSMLN 1034
+ ER + + S+ +Y+ +L +Y+ + RN+GKG + +N
Sbjct: 1266 EV----EREIIKQEESVDPDYWEKLLRHHYEQQQEDLARNLGKGKRIRKQVN 1313
Score = 49 (22.3 bits), Expect = 2.0e-130, Sum P(5) = 2.0e-130
Identities = 11/40 (27%), Positives = 24/40 (60%)
Query: 1323 NDMLGSVKATEWNEETTEDQAESPVAAVDDASAENSERKE 1362
ND GS + +W ++ +++Q++ VA+ ++ + ER E
Sbjct: 1315 ND--GSQEDRDWQDDQSDNQSDYSVAS-EEGDEDFDERSE 1351
Score = 46 (21.3 bits), Expect = 3.8e-08, Sum P(3) = 3.8e-08
Identities = 39/194 (20%), Positives = 68/194 (35%)
Query: 111 NGKWQCPKCTQKNDQLKPISNLDSISKRARSKIITIKSQSGVKSSGADKVSQIFGNSILA 170
NG+W P+ + + K +S S S + + +Q + I
Sbjct: 1482 NGRWSMPELAEIEEN-KKLSQPSSPSPKTPTPSTPGDTQPNTPAPVPPPEEGIKAEE--- 1537
Query: 171 RKRSNKGKSVLALGVKSLEKSLDSSQVDVSCSTKPENTS---AGVPVEGSSSCPNDDDEK 227
SNK + A K L S + ++V + +P T+ A PV S+ +E
Sbjct: 1538 -GASNKEQGESAEPEKELSASANDTEVPMEQCAQPAETAPQEAKSPVN-STEADEKKEEP 1595
Query: 228 QLNASPTDSLADTKFHPAEEVLPHSQVTKSEQNDEVPV----EKHEKSSTNGSSGIKF-- 281
++ + + + +V +E E PV EK EK + +
Sbjct: 1596 EVKERTDEPMEVESKGTSTDVEKVEDRAPTENTSEPPVITLDEKDEKKDDDKRDVVMLQN 1655
Query: 282 --VLAIGASERDRK 293
+L A ER +K
Sbjct: 1656 GEMLKESADERHKK 1669
Score = 45 (20.9 bits), Expect = 2.3e-07, Sum P(4) = 2.3e-07
Identities = 23/99 (23%), Positives = 44/99 (44%)
Query: 504 KECKGENAIDLLREDDKDSDPVAVNGKVQDESAVSTEDLGERNDKMVVEDADVSLRDNEG 563
KE +GE+A E +K+ A + +V E + + K V + + E
Sbjct: 1542 KE-QGESA-----EPEKELSASANDTEVPMEQCAQPAETAPQEAKSPVNSTEADEKKEE- 1594
Query: 564 LTVSEIHITCESTDKDVDVGKKTSGSVAKRVQEPAVTES 602
E+ E TD+ ++V K + + ++V++ A TE+
Sbjct: 1595 ---PEVK---ERTDEPMEVESKGTSTDVEKVEDRAPTEN 1627
Score = 44 (20.5 bits), Expect = 2.0e-09, Sum P(4) = 2.0e-09
Identities = 36/157 (22%), Positives = 63/157 (40%)
Query: 156 GADKVSQIFGNSILARKRSNKGKSVLALGVKSL--EKSLDSSQVDVSCSTKPENTSAGVP 213
GAD ++ F + + R+ ++ + +GV SL +K + V+ S PE A +
Sbjct: 1440 GADG-AETFADGV-PREGLSRQHVLTRIGVMSLIRKKVQEFEHVNGRWSM-PE--LAEIE 1494
Query: 214 VEGSSSCPNDDDEKQLNAS-PTDSLADTK--FHPAEEVLPHSQ-VTKSEQNDEVPVEKHE 269
S P+ K S P D+ +T P EE + + + EQ + EK
Sbjct: 1495 ENKKLSQPSSPSPKTPTPSTPGDTQPNTPAPVPPPEEGIKAEEGASNKEQGESAEPEKEL 1554
Query: 270 KSSTNGSSGIKFVLAIGASERDRKRKPEVKDEDSQKK 306
+S N + A A ++ K V ++ +K
Sbjct: 1555 SASANDTEVPMEQCAQPAETAPQEAKSPVNSTEADEK 1591
Score = 40 (19.1 bits), Expect = 1.1e-135, Sum P(6) = 1.1e-135
Identities = 7/25 (28%), Positives = 14/25 (56%)
Query: 1339 TEDQAESPVAAVDDASAENSERKEE 1363
TE+ +E PV +D+ + + K +
Sbjct: 1625 TENTSEPPVITLDEKDEKKDDDKRD 1649
Score = 39 (18.8 bits), Expect = 1.1e-135, Sum P(6) = 1.1e-135
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 20 RKRRKLPCGPGLSNGKEENLV 40
R R+KL G G+E++ V
Sbjct: 310 RSRKKLKAGKKKKKGEEDSTV 330
Score = 39 (18.8 bits), Expect = 2.4e-117, Sum P(5) = 2.4e-117
Identities = 10/27 (37%), Positives = 14/27 (51%)
Query: 363 AQRKDELAEETTDPLDKSDKAGVHVNE 389
A+RK+E EE D K K+ + E
Sbjct: 99 AKRKEEEDEEEEDDDSKEPKSSTQLLE 125
>UNIPROTKB|J9NRN3 [details] [associations]
symbol:CHD5 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012958 InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271
Pfam:PF00628 Pfam:PF08073 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0006355 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 InterPro:IPR019786
PROSITE:PS01359 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR023780 GeneTree:ENSGT00560000076896 EMBL:AAEX03003895
EMBL:AAEX03003896 EMBL:AAEX03003897 Ensembl:ENSCAFT00000044104
Uniprot:J9NRN3
Length = 1195
Score = 1069 (381.4 bits), Expect = 1.3e-133, Sum P(3) = 1.3e-133
Identities = 230/448 (51%), Positives = 296/448 (66%)
Query: 753 GGALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLV 812
GG L P+QLE LNWLR W + + ILADEMGLGKTV F+ SLY E +K P LV
Sbjct: 671 GGTLHPYQLEGLNWLRFSWAQGTDTILADEMGLGKTVQTIVFLYSLYKEGHSKGPYLVSA 730
Query: 813 PLSTMPNWLAEFALWAPNLNVVEYHGCAKARAIIRQYEWHASDPDNLN-------KKTSS 865
PLST+ NW EF +WAP+ VV Y G ++R++IR+ E+ D + KK
Sbjct: 731 PLSTIINWEREFEMWAPDFYVVTYTGDKESRSVIRENEFSFEDNAIRSGKKVFRMKKEVQ 790
Query: 866 YKFNVLLTTYEMILADSSHLRGVPWEVLVVDEGHRXXXXXXXXXXXXXXXXXQHRVLLTG 925
KF+VLLT+YE+I D + L + W LVVDE HR +++LLTG
Sbjct: 791 IKFHVLLTSYELITIDQAILGSIEWACLVVDEAHRLKNNQSKFFRVLNSYKIDYKLLLTG 850
Query: 926 TPLQNNIGEMYNLLNFLQPASFPSLSSFEEKFNDLTTTQKVEELKKLVAPHMLRRLKKDA 985
TPLQNN+ E+++LLNFL P F +L F E+F D++ ++++L L+ PHMLRRLK D
Sbjct: 851 TPLQNNLEELFHLLNFLTPERFNNLEGFLEEFADISKEDQIKKLHDLLGPHMLRRLKADV 910
Query: 986 MQNIPPKTERMVPVELSSIQAEYYRAMLTKNYQILRNIGKGVAQQSMLNIVMQLRKVCNH 1045
+N+P KTE +V VELS +Q +YY+ +LT+N++ L + G G Q S+LNI+M L+K CNH
Sbjct: 911 FKNMPAKTELIVRVELSQMQKKYYKFILTRNFEALNSKGGG-NQVSLLNIMMDLKKCCNH 969
Query: 1046 PYLIP--GTE-PDSGSVEFLHEMRIKASAKLTLLHSMLKVLYKEGHRVLIFSQMTKLLDI 1102
PYL P E P + + +K+S KL LL MLK L EGHRVLIFSQMTK+LD+
Sbjct: 970 PYLFPVAAVEAPVLPNGSYDGSSLVKSSGKLMLLQKMLKKLRDEGHRVLIFSQMTKMLDL 1029
Query: 1103 LEDYLNIEFGPKTYERVDGSVSVGDRQAAITRFNQDKSR-FVFLLSTRSCGLGINLATAD 1161
LED+L E G K YER+DG ++ G RQ AI RFN ++ F FLLSTR+ GLGINLATAD
Sbjct: 1030 LEDFLEYE-GYK-YERIDGGITGGLRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATAD 1087
Query: 1162 TVIIYDSDFNPHADIQAMNRAHRIGQSK 1189
TVIIYDSD+NPH DIQA +RAHRIGQ+K
Sbjct: 1088 TVIIYDSDWNPHNDIQAFSRAHRIGQNK 1115
Score = 341 (125.1 bits), Expect = 1.9e-44, Sum P(3) = 1.9e-44
Identities = 83/210 (39%), Positives = 115/210 (54%)
Query: 661 WKQPQRVISLRSSKDGTREAFVKWTGLPYDECTWEKLDEPALEKYSHLTDLFVQFERQTL 720
W R+++ K G +KW LPYD+CTWE +D+ + Y +L + L
Sbjct: 565 WMMIHRILNHSFDKKGDVHYLIKWKDLPYDQCTWE-IDDIDIPYYDNLKQAYWGHRELML 623
Query: 721 KKDASEDE--LPRGK---GDCQQ----SEIVALT----EQPEELK--GGALFPHQLEALN 765
+DA + + +GK D Q+ + IV T +QP + GG L P+QLE LN
Sbjct: 624 GEDARLPKRLVKKGKKLKDDKQEKPPDTPIVDPTVKFDKQPWYIDSTGGTLHPYQLEGLN 683
Query: 766 WLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLSTMPNWLAEFA 825
WLR W + + ILADEMGLGKTV F+ SLY E +K P LV PLST+ NW EF
Sbjct: 684 WLRFSWAQGTDTILADEMGLGKTVQTIVFLYSLYKEGHSKGPYLVSAPLSTIINWEREFE 743
Query: 826 LWAPNLNVVEYHGCAKARAIIRQYEWHASD 855
+WAP+ VV Y G ++R++IR+ E+ D
Sbjct: 744 MWAPDFYVVTYTGDKESRSVIRENEFSFED 773
Score = 192 (72.6 bits), Expect = 1.3e-133, Sum P(3) = 1.3e-133
Identities = 30/65 (46%), Positives = 43/65 (66%)
Query: 56 KNEINADRSSTKKKGNDGYYYECVICDLGGNLLCCDSCPRTYHLQCLDPPLKRIPNGKWQ 115
K++ + + ++ D + C +C GG LLCCD+CP +YHL CL+PPL IPNG+W
Sbjct: 371 KDDDDEEEEGGCEEEEDDHMEFCRVCKDGGELLCCDACPSSYHLHCLNPPLPEIPNGEWL 430
Query: 116 CPKCT 120
CP+CT
Sbjct: 431 CPRCT 435
Score = 189 (71.6 bits), Expect = 2.7e-133, Sum P(3) = 2.7e-133
Identities = 33/72 (45%), Positives = 44/72 (61%)
Query: 63 RSSTKKKGNDGYYYE------CVICDLGGNLLCCDSCPRTYHLQCLDPPLKRIPNGKWQC 116
R KK+ +DG YE C +C GG ++ CD+CPR YHL CLDP L++ P GKW C
Sbjct: 299 RRRKKKRIDDGDGYETDHQDYCEVCQQGGEIILCDTCPRAYHLVCLDPELEKAPEGKWSC 358
Query: 117 PKCTQKNDQLKP 128
P C ++ Q +P
Sbjct: 359 PHCEKEGIQWEP 370
Score = 84 (34.6 bits), Expect = 1.3e-133, Sum P(3) = 1.3e-133
Identities = 20/53 (37%), Positives = 26/53 (49%)
Query: 596 EPAVTESAQVKGKAVSYEFLVKWVGKSNIHNSWIPESQLKVLAKRKLENYKAK 648
EP V ++G EF VKW G S H SW+ E QL++ NY+ K
Sbjct: 468 EPGVPPPKPLEG-IPEREFFVKWAGLSYWHCSWVKELQLELYHTVMYRNYQRK 519
Score = 84 (34.6 bits), Expect = 1.3e-133, Sum P(3) = 1.3e-133
Identities = 25/59 (42%), Positives = 30/59 (50%)
Query: 678 REAFVKWTGLPYDECTWEKLDEPALEKYSHLTDLFVQFERQTLKKDASEDE-LPRGKGD 735
RE FVKW GL Y C+W K E LE Y H T ++ ++R K D E G GD
Sbjct: 483 REFFVKWAGLSYWHCSWVK--ELQLELY-H-TVMYRNYQR---KNDMDEPPPFDYGSGD 534
Score = 45 (20.9 bits), Expect = 1.0e-124, Sum P(5) = 1.0e-124
Identities = 19/84 (22%), Positives = 34/84 (40%)
Query: 503 TKECKGENAIDLLREDDKDSDPVAVNGKVQDESAVSTEDLGERNDKMVVEDADVSLRDNE 562
TKE KG +R+ K S GK + + + G N + ++ R+
Sbjct: 218 TKEGKGPG----VRKKIKGSKDAKKKGKGRKVAGLKFRFGGISNKRKKGSSSEEDEREES 273
Query: 563 GLTVSEIHITCESTDKDVDVGKKT 586
L + IH + ++ +GKK+
Sbjct: 274 DLDSASIHSSSVRSEGSTALGKKS 297
Score = 41 (19.5 bits), Expect = 1.0e-124, Sum P(5) = 1.0e-124
Identities = 13/46 (28%), Positives = 24/46 (52%)
Query: 257 SEQNDEVPVEKHEKSSTNGSSGIKFVLAIGASERDRKRKPEVKDED 302
SE D++ EK E ++ S K + ++++K K + KD+D
Sbjct: 50 SENEDDLE-EKSESEGSDYSPNKKKKKKL-KDKKEKKAKRKRKDDD 93
Score = 41 (19.5 bits), Expect = 2.4e-110, Sum P(2) = 2.4e-110
Identities = 11/33 (33%), Positives = 16/33 (48%)
Query: 721 KKDASEDELPRGKGDCQQ-SEIVALTEQPEELK 752
KK+ S DEL + D ++ SE P + K
Sbjct: 41 KKEGSNDELSENEDDLEEKSESEGSDYSPNKKK 73
Score = 40 (19.1 bits), Expect = 1.0e-124, Sum P(5) = 1.0e-124
Identities = 11/32 (34%), Positives = 14/32 (43%)
Query: 43 ESPRNTPSAKRRLKNEINADRSSTKKK--GND 72
E P P K+ K + N + KKK ND
Sbjct: 16 EEPVGLPKKKKSKKLKENRSKGKRKKKEGSND 47
Score = 40 (19.1 bits), Expect = 1.1e-120, Sum P(4) = 1.1e-120
Identities = 12/47 (25%), Positives = 22/47 (46%)
Query: 257 SEQNDEVPVEKHEKSSTNGSS-GIKFVLAIGASERDRKRKPEVKDED 302
S + DE + +S + SS + A+G + R++K + D D
Sbjct: 264 SSEEDEREESDLDSASIHSSSVRSEGSTALGKKSKRRRKKKRIDDGD 310
Score = 39 (18.8 bits), Expect = 4.2e-09, Sum P(2) = 4.2e-09
Identities = 6/18 (33%), Positives = 11/18 (61%)
Query: 1001 LSSIQAEYYRAMLTKNYQ 1018
+ +Q E Y ++ +NYQ
Sbjct: 500 VKELQLELYHTVMYRNYQ 517
Score = 38 (18.4 bits), Expect = 2.1e-124, Sum P(5) = 2.1e-124
Identities = 12/53 (22%), Positives = 24/53 (45%)
Query: 256 KSEQNDEVPVEKHEKSSTNGSSGIKFVLAIGASERDRKRKPEVKDEDSQKKLR 308
K NDE+ + + + S G + ++K+K ++KD+ +K R
Sbjct: 42 KEGSNDELSENEDDLEEKSESEGSDY-------SPNKKKKKKLKDKKEKKAKR 87
Score = 38 (18.4 bits), Expect = 5.6e-124, Sum P(5) = 5.6e-124
Identities = 13/48 (27%), Positives = 19/48 (39%)
Query: 334 SKLHEKQRTNNDEVSASLCEVDVGTKGLDAQRKDELAEETTDPLDKSD 381
S E +R +D SAS+ V ++G A K +D D
Sbjct: 263 SSSEEDEREESDLDSASIHSSSVRSEGSTALGKKSKRRRKKKRIDDGD 310
Score = 37 (18.1 bits), Expect = 2.7e-124, Sum P(5) = 2.7e-124
Identities = 8/18 (44%), Positives = 11/18 (61%)
Query: 367 DELAEETTDPLDKSDKAG 384
DEL+E D +KS+ G
Sbjct: 47 DELSENEDDLEEKSESEG 64
Score = 37 (18.1 bits), Expect = 8.5e-120, Sum P(5) = 8.5e-120
Identities = 7/28 (25%), Positives = 13/28 (46%)
Query: 723 DASEDELPRGKGDCQQSEIVALTEQPEE 750
D ++ P GK C E + +P++
Sbjct: 345 DPELEKAPEGKWSCPHCEKEGIQWEPKD 372
Score = 37 (18.1 bits), Expect = 8.5e-120, Sum P(5) = 8.5e-120
Identities = 9/42 (21%), Positives = 20/42 (47%)
Query: 699 EPALEKYSHLTDLFVQFERQTLKKDASEDELPRGKGDCQQSE 740
+P LEK E++ ++ + +D+ +G C++ E
Sbjct: 345 DPELEKAPEGKWSCPHCEKEGIQWEPKDDDDEEEEGGCEEEE 386
>UNIPROTKB|F2Z2R5 [details] [associations]
symbol:CHD5 "Chromodomain-helicase-DNA-binding protein 5"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012958 InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271
Pfam:PF00628 Pfam:PF08073 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0006355 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 InterPro:IPR019786
PROSITE:PS01359 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 EMBL:AL031847
GO:GO:0008026 InterPro:IPR023780 EMBL:AL035406 HGNC:HGNC:16816
ChiTaRS:CHD5 IPI:IPI00444866 ProteinModelPortal:F2Z2R5 SMR:F2Z2R5
Ensembl:ENST00000496404 ArrayExpress:F2Z2R5 Bgee:F2Z2R5
Uniprot:F2Z2R5
Length = 1225
Score = 1069 (381.4 bits), Expect = 1.3e-133, Sum P(3) = 1.3e-133
Identities = 230/448 (51%), Positives = 296/448 (66%)
Query: 753 GGALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLV 812
GG L P+QLE LNWLR W + + ILADEMGLGKTV F+ SLY E +K P LV
Sbjct: 697 GGTLHPYQLEGLNWLRFSWAQGTDTILADEMGLGKTVQTIVFLYSLYKEGHSKGPYLVSA 756
Query: 813 PLSTMPNWLAEFALWAPNLNVVEYHGCAKARAIIRQYEWHASDPDNLN-------KKTSS 865
PLST+ NW EF +WAP+ VV Y G ++R++IR+ E+ D + KK
Sbjct: 757 PLSTIINWEREFEMWAPDFYVVTYTGDKESRSVIRENEFSFEDNAIRSGKKVFRMKKEVQ 816
Query: 866 YKFNVLLTTYEMILADSSHLRGVPWEVLVVDEGHRXXXXXXXXXXXXXXXXXQHRVLLTG 925
KF+VLLT+YE+I D + L + W LVVDE HR +++LLTG
Sbjct: 817 IKFHVLLTSYELITIDQAILGSIEWACLVVDEAHRLKNNQSKFFRVLNSYKIDYKLLLTG 876
Query: 926 TPLQNNIGEMYNLLNFLQPASFPSLSSFEEKFNDLTTTQKVEELKKLVAPHMLRRLKKDA 985
TPLQNN+ E+++LLNFL P F +L F E+F D++ ++++L L+ PHMLRRLK D
Sbjct: 877 TPLQNNLEELFHLLNFLTPERFNNLEGFLEEFADISKEDQIKKLHDLLGPHMLRRLKADV 936
Query: 986 MQNIPPKTERMVPVELSSIQAEYYRAMLTKNYQILRNIGKGVAQQSMLNIVMQLRKVCNH 1045
+N+P KTE +V VELS +Q +YY+ +LT+N++ L + G G Q S+LNI+M L+K CNH
Sbjct: 937 FKNMPAKTELIVRVELSQMQKKYYKFILTRNFEALNSKGGG-NQVSLLNIMMDLKKCCNH 995
Query: 1046 PYLIP--GTE-PDSGSVEFLHEMRIKASAKLTLLHSMLKVLYKEGHRVLIFSQMTKLLDI 1102
PYL P E P + + +K+S KL LL MLK L EGHRVLIFSQMTK+LD+
Sbjct: 996 PYLFPVAAVEAPVLPNGSYDGSSLVKSSGKLMLLQKMLKKLRDEGHRVLIFSQMTKMLDL 1055
Query: 1103 LEDYLNIEFGPKTYERVDGSVSVGDRQAAITRFNQDKSR-FVFLLSTRSCGLGINLATAD 1161
LED+L E G K YER+DG ++ G RQ AI RFN ++ F FLLSTR+ GLGINLATAD
Sbjct: 1056 LEDFLEYE-GYK-YERIDGGITGGLRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATAD 1113
Query: 1162 TVIIYDSDFNPHADIQAMNRAHRIGQSK 1189
TVIIYDSD+NPH DIQA +RAHRIGQ+K
Sbjct: 1114 TVIIYDSDWNPHNDIQAFSRAHRIGQTK 1141
Score = 340 (124.7 bits), Expect = 4.6e-44, Sum P(3) = 4.6e-44
Identities = 83/210 (39%), Positives = 114/210 (54%)
Query: 661 WKQPQRVISLRSSKDGTREAFVKWTGLPYDECTWEKLDEPALEKYSHLTDLFVQFERQTL 720
W R+++ K G +KW LPYD+CTWE +D+ + Y +L + L
Sbjct: 591 WMMIHRILNHSFDKKGDVHYLIKWKDLPYDQCTWE-IDDIDIPYYDNLKQAYWGHRELML 649
Query: 721 KKDASEDE--LPRGK---GDCQQ----SEIVALT----EQPEELK--GGALFPHQLEALN 765
+D + L +GK D Q+ + IV T +QP + GG L P+QLE LN
Sbjct: 650 GEDTRLPKRLLKKGKKLRDDKQEKPPDTPIVDPTVKFDKQPWYIDSTGGTLHPYQLEGLN 709
Query: 766 WLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLSTMPNWLAEFA 825
WLR W + + ILADEMGLGKTV F+ SLY E +K P LV PLST+ NW EF
Sbjct: 710 WLRFSWAQGTDTILADEMGLGKTVQTIVFLYSLYKEGHSKGPYLVSAPLSTIINWEREFE 769
Query: 826 LWAPNLNVVEYHGCAKARAIIRQYEWHASD 855
+WAP+ VV Y G ++R++IR+ E+ D
Sbjct: 770 MWAPDFYVVTYTGDKESRSVIRENEFSFED 799
Score = 192 (72.6 bits), Expect = 1.3e-133, Sum P(3) = 1.3e-133
Identities = 30/65 (46%), Positives = 43/65 (66%)
Query: 56 KNEINADRSSTKKKGNDGYYYECVICDLGGNLLCCDSCPRTYHLQCLDPPLKRIPNGKWQ 115
K++ + + ++ D + C +C GG LLCCD+CP +YHL CL+PPL IPNG+W
Sbjct: 397 KDDDDEEEEGGCEEEEDDHMEFCRVCKDGGELLCCDACPSSYHLHCLNPPLPEIPNGEWL 456
Query: 116 CPKCT 120
CP+CT
Sbjct: 457 CPRCT 461
Score = 190 (71.9 bits), Expect = 2.2e-133, Sum P(3) = 2.2e-133
Identities = 39/95 (41%), Positives = 54/95 (56%)
Query: 40 VTSESPRNTPSAKRRLKNEINADRSSTKKKGNDGYYYE------CVICDLGGNLLCCDSC 93
+ S S R+ SA K++ R KK+ +DG YE C +C GG ++ CD+C
Sbjct: 306 IHSASVRSECSAALGKKSK----RRRKKKRIDDGDGYETDHQDYCEVCQQGGEIILCDTC 361
Query: 94 PRTYHLQCLDPPLKRIPNGKWQCPKCTQKNDQLKP 128
PR YHL CLDP L++ P GKW CP C ++ Q +P
Sbjct: 362 PRAYHLVCLDPELEKAPEGKWSCPHCEKEGIQWEP 396
Score = 84 (34.6 bits), Expect = 1.3e-133, Sum P(3) = 1.3e-133
Identities = 25/59 (42%), Positives = 30/59 (50%)
Query: 678 REAFVKWTGLPYDECTWEKLDEPALEKYSHLTDLFVQFERQTLKKDASEDE-LPRGKGD 735
RE FVKW GL Y C+W K E LE Y H T ++ ++R K D E G GD
Sbjct: 509 REFFVKWAGLSYWHCSWVK--ELQLELY-H-TVMYRNYQR---KNDMDEPPPFDYGSGD 560
Score = 82 (33.9 bits), Expect = 2.2e-133, Sum P(3) = 2.2e-133
Identities = 19/53 (35%), Positives = 27/53 (50%)
Query: 596 EPAVTESAQVKGKAVSYEFLVKWVGKSNIHNSWIPESQLKVLAKRKLENYKAK 648
EP++ ++G EF VKW G S H SW+ E QL++ NY+ K
Sbjct: 494 EPSLPPPKPLEG-IPEREFFVKWAGLSYWHCSWVKELQLELYHTVMYRNYQRK 545
Score = 49 (22.3 bits), Expect = 1.7e-122, Sum P(4) = 1.7e-122
Identities = 14/48 (29%), Positives = 19/48 (39%)
Query: 474 SSDEECMKNDIGVDRIQVYRRSVTKECKVTKECKGENAIDLLREDDKD 521
SS EE + + D ++ SV EC K + R DD D
Sbjct: 289 SSSEEDEREESDFDSASIHSASVRSECSAALGKKSKRRRKKKRIDDGD 336
Score = 48 (22.0 bits), Expect = 1.7e-122, Sum P(4) = 1.7e-122
Identities = 24/112 (21%), Positives = 48/112 (42%)
Query: 205 PENTSAGVPVEGSSSCPNDDDEKQLNASPTDSLADTKFHPAEEV-LPHSQVTKSEQNDEV 263
P T +P + N+D+ + ++ D F P E V LP + K + ++
Sbjct: 4 PVGTEEELPRLFAEEMENEDEMSEEEDGGLEAFDD--FFPVEPVSLPKKKKPKKLKENKC 61
Query: 264 PVEKHEKSSTNG--SSGIKFVLAIGASER-----DRKRKPEVKDEDSQKKLR 308
++ +K +N S + + SE ++K+K ++KD+ +K R
Sbjct: 62 KGKRKKKEGSNDELSENEEDLEEKSESEGSDYSPNKKKKKKLKDKKEKKAKR 113
Score = 44 (20.5 bits), Expect = 4.6e-122, Sum P(4) = 4.6e-122
Identities = 13/44 (29%), Positives = 23/44 (52%)
Query: 259 QNDEVPVEKHEKSSTNGSSGIKFVLAIGASERDRKRKPEVKDED 302
+N+E EK E ++ S K + ++++K K + KDED
Sbjct: 77 ENEEDLEEKSESEGSDYSPNKKKKKKL-KDKKEKKAKRKKKDED 119
Score = 43 (20.2 bits), Expect = 5.8e-122, Sum P(4) = 5.8e-122
Identities = 14/56 (25%), Positives = 31/56 (55%)
Query: 19 KRKRRKLPCGPGLSNGKEENLVTSESPRN--TPSAKRRLKNEINADRSSTKKKGND 72
KRK+++ LS +E+ SES + +P+ K++ K + ++ + +KK ++
Sbjct: 64 KRKKKE-GSNDELSENEEDLEEKSESEGSDYSPNKKKKKKLKDKKEKKAKRKKKDE 118
Score = 40 (19.1 bits), Expect = 5.1e-121, Sum P(4) = 5.1e-121
Identities = 11/47 (23%), Positives = 22/47 (46%)
Query: 257 SEQNDEVPVEKHEKSSTNGSS-GIKFVLAIGASERDRKRKPEVKDED 302
S + DE + +S + +S + A+G + R++K + D D
Sbjct: 290 SSEEDEREESDFDSASIHSASVRSECSAALGKKSKRRRKKKRIDDGD 336
Score = 40 (19.1 bits), Expect = 3.0e-110, Sum P(2) = 3.0e-110
Identities = 11/33 (33%), Positives = 16/33 (48%)
Query: 721 KKDASEDELPRGKGDCQQ-SEIVALTEQPEELK 752
KK+ S DEL + D ++ SE P + K
Sbjct: 67 KKEGSNDELSENEEDLEEKSESEGSDYSPNKKK 99
Score = 39 (18.8 bits), Expect = 4.5e-09, Sum P(2) = 4.5e-09
Identities = 6/18 (33%), Positives = 11/18 (61%)
Query: 1001 LSSIQAEYYRAMLTKNYQ 1018
+ +Q E Y ++ +NYQ
Sbjct: 526 VKELQLELYHTVMYRNYQ 543
Score = 37 (18.1 bits), Expect = 2.5e-121, Sum P(4) = 2.5e-121
Identities = 8/18 (44%), Positives = 11/18 (61%)
Query: 367 DELAEETTDPLDKSDKAG 384
DEL+E D +KS+ G
Sbjct: 73 DELSENEEDLEEKSESEG 90
Score = 37 (18.1 bits), Expect = 1.5e-117, Sum P(4) = 1.5e-117
Identities = 7/28 (25%), Positives = 13/28 (46%)
Query: 723 DASEDELPRGKGDCQQSEIVALTEQPEE 750
D ++ P GK C E + +P++
Sbjct: 371 DPELEKAPEGKWSCPHCEKEGIQWEPKD 398
Score = 37 (18.1 bits), Expect = 1.5e-117, Sum P(4) = 1.5e-117
Identities = 9/42 (21%), Positives = 20/42 (47%)
Query: 699 EPALEKYSHLTDLFVQFERQTLKKDASEDELPRGKGDCQQSE 740
+P LEK E++ ++ + +D+ +G C++ E
Sbjct: 371 DPELEKAPEGKWSCPHCEKEGIQWEPKDDDDEEEEGGCEEEE 412
>UNIPROTKB|K7EMY3 [details] [associations]
symbol:CHD5 "Chromodomain-helicase-DNA-binding protein 5"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR002464 Pfam:PF00176 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:AL031847 InterPro:IPR009462
InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465 EMBL:AL035406
HGNC:HGNC:16816 Ensembl:ENST00000462991 Uniprot:K7EMY3
Length = 1060
Score = 1267 (451.1 bits), Expect = 4.2e-132, Sum P(2) = 4.2e-132
Identities = 293/623 (47%), Positives = 394/623 (63%)
Query: 753 GGALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLV 812
GG L P+QLE LNWLR W + + ILADEMGLGKTV F+ SLY E +K P LV
Sbjct: 80 GGTLHPYQLEGLNWLRFSWAQGTDTILADEMGLGKTVQTIVFLYSLYKEGHSKGPYLVSA 139
Query: 813 PLSTMPNWLAEFALWAPNLNVVEYHGCAKARAIIRQYEWHASDPDNLN-------KKTSS 865
PLST+ NW EF +WAP+ VV Y G ++R++IR+ E+ D + KK
Sbjct: 140 PLSTIINWEREFEMWAPDFYVVTYTGDKESRSVIRENEFSFEDNAIRSGKKVFRMKKEVQ 199
Query: 866 YKFNVLLTTYEMILADSSHLRGVPWEVLVVDEGHRXXXXXXXXXXXXXXXXXQHRVLLTG 925
KF+VLLT+YE+I D + L + W LVVDE HR +++LLTG
Sbjct: 200 IKFHVLLTSYELITIDQAILGSIEWACLVVDEAHRLKNNQSKFFRVLNSYKIDYKLLLTG 259
Query: 926 TPLQNNIGEMYNLLNFLQPASFPSLSSFEEKFNDLTTTQKVEELKKLVAPHMLRRLKKDA 985
TPLQNN+ E+++LLNFL P F +L F E+F D++ ++++L L+ PHMLRRLK D
Sbjct: 260 TPLQNNLEELFHLLNFLTPERFNNLEGFLEEFADISKEDQIKKLHDLLGPHMLRRLKADV 319
Query: 986 MQNIPPKTERMVPVELSSIQAEYYRAMLTKNYQILRNIGKGVAQQSMLNIVMQLRKVCNH 1045
+N+P KTE +V VELS +Q +YY+ +LT+N++ L + G G Q S+LNI+M L+K CNH
Sbjct: 320 FKNMPAKTELIVRVELSQMQKKYYKFILTRNFEALNSKGGG-NQVSLLNIMMDLKKCCNH 378
Query: 1046 PYLIP--GTE-PDSGSVEFLHEMRIKASAKLTLLHSMLKVLYKEGHRVLIFSQMTKLLDI 1102
PYL P E P + + +K+S KL LL MLK L EGHRVLIFSQMTK+LD+
Sbjct: 379 PYLFPVAAVEAPVLPNGSYDGSSLVKSSGKLMLLQKMLKKLRDEGHRVLIFSQMTKMLDL 438
Query: 1103 LEDYLNIEFGPKTYERVDGSVSVGDRQAAITRFNQDKSR-FVFLLSTRSCGLGINLATAD 1161
LED+L E G K YER+DG ++ G RQ AI RFN ++ F FLLSTR+ GLGINLATAD
Sbjct: 439 LEDFLEYE-GYK-YERIDGGITGGLRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATAD 496
Query: 1162 TVIIYDSDFNPHADIQAMNRAHRIGQSKRLLVYRLVVRASVEERILQLAKKKLMLDQLFV 1221
TVIIYDSD+NPH DIQA +RAHRIGQ+K++++YR V RASVEERI Q+AK+K+ML L V
Sbjct: 497 TVIIYDSDWNPHNDIQAFSRAHRIGQNKKVMIYRFVTRASVEERITQVAKRKMMLTHLVV 556
Query: 1222 -----NKSGS--QKEVEDILRWGTEELFNDSPGINGK-DMGENN-TSIEEAVR----DLE 1268
+KSGS ++E++DIL++GTEELF D + G G+ T I + +L
Sbjct: 557 RPGLGSKSGSMTKQELDDILKFGTEELFKDD--VEGMMSQGQRPVTPIPDVQSSKGGNLA 614
Query: 1269 QKHRKRGGGL--GDVYQDKCTEGSTKIVWDENAIARLLDRSNLQSGSTDLAEGDLENDML 1326
+K+ G GD +K E S+ I +D+ AI++LLDR+ + T+L N+ L
Sbjct: 615 ASAKKKHGSTPPGD---NKDVEDSSVIHYDDAAISKLLDRNQDATDDTELQN---MNEYL 668
Query: 1327 GSVKATEW--NEETTEDQAESPV 1347
S K ++ EE ++ E +
Sbjct: 669 SSFKVAQYVVREEDGVEEVEREI 691
Score = 296 (109.3 bits), Expect = 2.4e-21, Sum P(2) = 2.4e-21
Identities = 75/182 (41%), Positives = 102/182 (56%)
Query: 689 YDECTWEKLDEPALEKYSHLTDLFVQFERQTLKKDASEDE--LPRGK---GDCQQ----S 739
YD+CTWE +D+ + Y +L + L +D + L +GK D Q+ +
Sbjct: 2 YDQCTWE-IDDIDIPYYDNLKQAYWGHRELMLGEDTRLPKRLLKKGKKLRDDKQEKPPDT 60
Query: 740 EIVALT----EQPEELK--GGALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACA 793
IV T +QP + GG L P+QLE LNWLR W + + ILADEMGLGKTV
Sbjct: 61 PIVDPTVKFDKQPWYIDSTGGTLHPYQLEGLNWLRFSWAQGTDTILADEMGLGKTVQTIV 120
Query: 794 FISSLYCEFKAKLPCLVLVPLSTMPNWLAEFALWAPNLNVVEYHGCAKARAIIRQYEWHA 853
F+ SLY E +K P LV PLST+ NW EF +WAP+ VV Y G ++R++IR+ E+
Sbjct: 121 FLYSLYKEGHSKGPYLVSAPLSTIINWEREFEMWAPDFYVVTYTGDKESRSVIRENEFSF 180
Query: 854 SD 855
D
Sbjct: 181 ED 182
Score = 49 (22.3 bits), Expect = 4.2e-132, Sum P(2) = 4.2e-132
Identities = 12/40 (30%), Positives = 22/40 (55%)
Query: 1323 NDMLGSVKATEWNEETTEDQAESPVAAVDDASAENSERKE 1362
ND S + EW +E +++Q+E + + +D + ER E
Sbjct: 735 ND--ASQEDQEWQDELSDNQSEYSIGS-EDEDEDFEERPE 771
Score = 38 (18.4 bits), Expect = 3.3e-20, Sum P(2) = 3.3e-20
Identities = 11/36 (30%), Positives = 18/36 (50%)
Query: 979 RRLKKDAMQNIPPKTERMVP-VELSSIQAEYYRAML 1013
R+LK D + +PP R+ +E+ A +A L
Sbjct: 781 RQLKSDRDKPLPPLLARVGGNIEVLGFNARQRKAFL 816
>DICTYBASE|DDB_G0284171 [details] [associations]
symbol:DDB_G0284171 "CHR group protein" species:44689
"Dictyostelium discoideum" [GO:0005634 "nucleus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=ISS] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=ISS] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013
PROSITE:PS51194 SMART:SM00298 SMART:SM00490 dictyBase:DDB_G0284171
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
GO:GO:0006357 EMBL:AAFI02000063 GO:GO:0004003 InterPro:IPR016197
SUPFAM:SSF54160 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR023780 InterPro:IPR025260 Pfam:PF13907
KO:K11367 RefSeq:XP_638708.1 ProteinModelPortal:Q54Q16
STRING:Q54Q16 EnsemblProtists:DDB0220640 GeneID:8624452
KEGG:ddi:DDB_G0284171 InParanoid:Q54Q16 OMA:DINATEF
ProtClustDB:CLSZ2732060 Uniprot:Q54Q16
Length = 1917
Score = 1171 (417.3 bits), Expect = 4.1e-128, Sum P(3) = 4.1e-128
Identities = 281/671 (41%), Positives = 397/671 (59%)
Query: 615 LVKWVGKSNIHNSWIPESQLKVLAKRKLENYKAKY--GTTVINICDERWKQPQRVISLRS 672
+ K + K I + I E +V+A+R++ + + TT I+ + S
Sbjct: 618 ITKELMKQEIQDYTIVE---RVIAQREVAQSRDQIVNSTTAIDPSTGESTTTTTTTTASS 674
Query: 673 SKDGTR-EAFVKWTGLPYDECTWEKLDEPALEKYSHLTDLFVQFERQTLKKDASEDELPR 731
S+ + + VKW L Y E TWE ++ A ++ D F+ +Q + +
Sbjct: 675 SEYKSNIQYLVKWKVLAYSEVTWEYPEDIA--EFQTEIDTFL-IRQQNNQNAPMKANTIS 731
Query: 732 GKGDCQQSEIVALTEQPEELKGGALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSA 791
K Q L QP + G L +Q+E LNWL W + NVILADEMGLGKT+
Sbjct: 732 AKKRLDQG-FTKLDTQPSWISAGTLRDYQMEGLNWLVHSWMNNTNVILADEMGLGKTIQT 790
Query: 792 CAFISSLYCEFKAKLPCLVLVPLSTMPNWLAEFALWAPNLNVVEYHGCAKARAIIRQYEW 851
+F+S L+ E K P LV+VPLST+ NW EFA WAP +NV+ Y G ++R IIR YE+
Sbjct: 791 ISFLSYLFNEQDIKGPFLVVVPLSTIENWQREFAKWAPAMNVIVYTGTGQSRDIIRLYEF 850
Query: 852 HASDPDNLNKKTSSYKFNVLLTTYEMILADSSHLRGVPWEVLVVDEGHRXXXXXXXXXXX 911
+ ++ L KK FNVLLTTY+ IL D + L + WE L VDE HR
Sbjct: 851 YTTN--RLGKK--KLNFNVLLTTYDFILKDKNTLGTIKWEFLAVDEAHRLKNSESVLHEV 906
Query: 912 XXXXXXQHRVLLTGTPLQNNIGEMYNLLNFLQPASFPSLSSFEEKFNDLTTTQKVEELKK 971
+R+L+TGTPLQN++ E++NLLNFL P F SL F+++++DL ++ +L
Sbjct: 907 LKLYNTTNRLLVTGTPLQNSLKELWNLLNFLMPNKFTSLKDFQDQYSDLKENDQIAQLHS 966
Query: 972 LVAPHMLRRLKKDAMQNIPPKTERMVPVELSSIQAEYYRAMLTKNYQILRNIGKGVAQQS 1031
++ PH+LRR+KKD +++PPKTER++ V+LS++Q +YY+ +LTKN+Q L N GKG + +
Sbjct: 967 VLKPHLLRRIKKDVEKSLPPKTERILRVDLSNVQKKYYKWILTKNFQEL-NKGKG-EKTT 1024
Query: 1032 MLNIVMQLRKVCNHPYLIPGT--EPDSGSVEFLHEMRIKASAKLTLLHSMLKVLYKEGHR 1089
+LNI+ +L+K CNHPYL E + G+ + L M I+AS KL LL +L L + GHR
Sbjct: 1025 LLNIMTELKKTCNHPYLYQNARDECELGAKDLLDSM-IRASGKLVLLDKLLIRLKETGHR 1083
Query: 1090 VLIFSQMTKLLDILEDYLNIEFGPK-TYERVDGSVSVGDRQAAITRFNQ-DKSRFVFLLS 1147
VLIFSQM ++LDIL DYL G ++R+DGS+S R A+ RFN D F FLLS
Sbjct: 1084 VLIFSQMVRMLDILADYLK---GRSFQFQRLDGSMSREKRSQAMDRFNAVDSPDFCFLLS 1140
Query: 1148 TRSCGLGINLATADTVIIYDSDFNPHADIQAMNRAHRIGQSKRLLVYRLVVRASVEERIL 1207
T++ GLGINL+TADTVII+DSD+NP D+QA RAHRIGQ + +YRLV ++SVEE IL
Sbjct: 1141 TKAGGLGINLSTADTVIIFDSDWNPQNDLQAEARAHRIGQKNHVNIYRLVSKSSVEEDIL 1200
Query: 1208 QLAKKKLMLDQLFV--------------NKSG--SQKEVEDILRWGTEELFNDSPGINGK 1251
+ AK+K++LD L + N S +++E+E IL++G EELF K
Sbjct: 1201 ERAKQKMVLDHLVIQTMEKSQTAKSNTPNNSNVFNKEELEAILKFGAEELF--------K 1252
Query: 1252 DMGENNTSIEE 1262
+ GE IEE
Sbjct: 1253 ETGEEANPIEE 1263
Score = 86 (35.3 bits), Expect = 4.1e-128, Sum P(3) = 4.1e-128
Identities = 18/35 (51%), Positives = 22/35 (62%)
Query: 612 YEFLVKWVGKSNIHNSWIP-ESQLKVLAKRKLENY 645
YEFLVKW G + IHN+W ES +KL+NY
Sbjct: 560 YEFLVKWKGWAYIHNTWDAYESLNNFKGNKKLQNY 594
Score = 64 (27.6 bits), Expect = 4.1e-128, Sum P(3) = 4.1e-128
Identities = 41/177 (23%), Positives = 70/177 (39%)
Query: 439 SENHNKILEENLACDTDL-DAEVTENLAELSPNVIRSSDEECMKNDIGVDRIQVYRRSVT 497
+ N+N I N D+ + + E+ + S + SS+EE + D R V
Sbjct: 197 NNNNNNINNNNNGLKKDISNFKGNESSSSESSSESSSSEEESESQE---DTPNKQRNKV- 252
Query: 498 KECKVTKECKGENAIDLLREDDKDSDPVA-VNGKVQDESAVSTEDLGERNDKMVVEDADV 556
+T++ E+ +L + K S V V+ + E V E G+ ND D +
Sbjct: 253 ----LTQQLASESEEELQPVNKKKSTMVKKVDSDFESEEDVEEEQSGKDNDS----DYEP 304
Query: 557 SLRDNEGLTVSEIHITCESTDKDVDVGKKTSGSVAKRVQEPAVTESAQVK-GKAVSY 612
S + + SE ++ D DV KK G K+ T + + K ++Y
Sbjct: 305 SESEEQ----SEEDYESDTDDDDVYTKKKRGGGGRKQTASTTTTTTRSGRQAKRITY 357
Score = 62 (26.9 bits), Expect = 6.7e-128, Sum P(3) = 6.7e-128
Identities = 21/92 (22%), Positives = 47/92 (51%)
Query: 413 KGDDTSSS--CHISATATDDRHSDDFLVSENHNKILEENLACDTDLDAE-VTENLAELSP 469
KG+++SSS S+++ ++ S + ++ NK+L + LA +++ + + V + + +
Sbjct: 218 KGNESSSSESSSESSSSEEESESQEDTPNKQRNKVLTQQLASESEEELQPVNKKKSTMVK 277
Query: 470 NVIRS--SDEECMKNDIGVDRIQVYRRSVTKE 499
V S+E+ + G D Y S ++E
Sbjct: 278 KVDSDFESEEDVEEEQSGKDNDSDYEPSESEE 309
Score = 55 (24.4 bits), Expect = 3.7e-127, Sum P(3) = 3.7e-127
Identities = 38/195 (19%), Positives = 70/195 (35%)
Query: 221 PNDDDEKQLNASPTDSLADTKFHPAEEVLPHSQVTKSEQNDEVPVEKHEKSSTNGSSGIK 280
PN +KQ N F +P T++ + + ++ E+S NGS G +
Sbjct: 373 PNKKKKKQTNGRKRKG---NNFQKENWTIP---ATRARRG-KAAIDSEEES--NGSDGDQ 423
Query: 281 FVLAIGASERDRKRKPEVKDEDSQKKLRVDXXXXXXXXXXXXXXXIGTLSPGTSKLHEKQ 340
FV + +S D+ ++K R + + G+ +
Sbjct: 424 FVNNVFSSSSSSDEDYSDNDKKNKKSKRTKRKNKTESDEESTITHLNLRTRGSGNIDFSI 483
Query: 341 RTNNDEVSASLCEVDVGTKGLDAQRKDELAEETTDPLDKSDKAGVHVNEIPLCKDIVPFE 400
++DE E + G+ G ETT+ S A + PL + P +
Sbjct: 484 FNSDDE------EGEDGSGGGGGSGSGLSTSETTN----SSTAAATASSKPLIYE--PAD 531
Query: 401 LQQVDRVLGCRVKGD 415
++++L R+K D
Sbjct: 532 EDVIEKILDHRLKKD 546
Score = 44 (20.5 bits), Expect = 5.3e-126, Sum P(3) = 5.3e-126
Identities = 28/136 (20%), Positives = 56/136 (41%)
Query: 145 TIKSQSGVKSSGADKVSQIFGNSILARKRSN-KGKSVLALGVKSLEKSLDSSQVDVSCST 203
TI + + ++ + ++ N+ L + SN KG + +S +S S + S
Sbjct: 188 TIPNNNSNNNNNNNNINN--NNNGLKKDISNFKGNE--SSSSESSSESSSSEEESESQED 243
Query: 204 KPENTSAGVPVEGSSSCPNDDDEKQLNASPTDSL--ADTKFHPAEEVLPHSQVTKSEQND 261
P V + +S ++++ + +N + + D+ F E+V Q K +D
Sbjct: 244 TPNKQRNKVLTQQLAS-ESEEELQPVNKKKSTMVKKVDSDFESEEDV-EEEQSGKDNDSD 301
Query: 262 EVPVEKHEKSSTNGSS 277
P E E+S + S
Sbjct: 302 YEPSESEEQSEEDYES 317
Score = 40 (19.1 bits), Expect = 1.4e-125, Sum P(3) = 1.4e-125
Identities = 9/35 (25%), Positives = 19/35 (54%)
Query: 32 SNGKEENLVTSESPRNTPSAKRRLKNEINADRSST 66
S+ +E+ ++ +N S + + KN+ +D ST
Sbjct: 432 SSSSDEDYSDNDK-KNKKSKRTKRKNKTESDEEST 465
Score = 40 (19.1 bits), Expect = 1.4e-125, Sum P(3) = 1.4e-125
Identities = 51/256 (19%), Positives = 94/256 (36%)
Query: 130 SNLDSISKRARSKIITIKSQSGVKSSGADKV--SQIFGNSILARKRSNKGKSVLALGVKS 187
S+ +S S+ + S+ + +SQ + +KV Q+ S + NK KS + V S
Sbjct: 223 SSSESSSESSSSEEES-ESQEDTPNKQRNKVLTQQLASESEEELQPVNKKKSTMVKKVDS 281
Query: 188 ---LEKSLDSSQVDVSCSTKPENTSAGVPVEGSSSCPNDDDE-----------KQLNASP 233
E+ ++ Q + E + + E DDD+ ++ AS
Sbjct: 282 DFESEEDVEEEQSGKDNDSDYEPSESEEQSEEDYESDTDDDDVYTKKKRGGGGRKQTAST 341
Query: 234 TDSLADTKFHPAEEVLPHSQVTKSEQNDEVPVEKHEKSSTNGSS--GIKFVL---AIGAS 288
T + + S +SE + + K +K TNG G F I A+
Sbjct: 342 TTTTTRSGRQAKRITYSESDSEESESDSDYEPNKKKKKQTNGRKRKGNNFQKENWTIPAT 401
Query: 289 ERDRKRKPEVKDED----SQKKLRVDXXXXXXXXXXXXXXXIGTLSPGTSKLHEKQRTNN 344
R R+ K + E+ S V+ + + + K +T +
Sbjct: 402 -RARRGKAAIDSEEESNGSDGDQFVNNVFSSSSSSDEDYSDNDKKNKKSKRTKRKNKTES 460
Query: 345 DEVSASLCEVDVGTKG 360
DE S ++ +++ T+G
Sbjct: 461 DEES-TITHLNLRTRG 475
>UNIPROTKB|E1C1A9 [details] [associations]
symbol:CHD2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 GeneTree:ENSGT00560000076896
OMA:AHSWCKN EMBL:AADN02041467 EMBL:AADN02041468 EMBL:AADN02041469
EMBL:AADN02041470 IPI:IPI00575702 Ensembl:ENSGALT00000011260
Uniprot:E1C1A9
Length = 1727
Score = 1110 (395.8 bits), Expect = 4.8e-128, Sum P(4) = 4.8e-128
Identities = 256/628 (40%), Positives = 372/628 (59%)
Query: 671 RSSKDGTREAFVKWTGLPYDECTWEKLDEPAL-EKYSHLTDLFVQFERQTLKKDASEDEL 729
R + E KW GLPY EC+WE DE + +K+ H D F R K + D
Sbjct: 406 RKTSSNDPEYLCKWMGLPYAECSWE--DEALISKKFQHCIDSFNN--RNNSKTIPTRD-- 459
Query: 730 PRGKGDCQQSEIVALTEQPEEL--KGGALFPHQLEALNWLRKCWHKSKNVILADEMGLGK 787
K Q+ VAL +QP + + L +QLE LNWL W K+ +VILADEMGLGK
Sbjct: 460 --CKVLKQRPRFVALKKQPSYIGSENLELRDYQLEGLNWLAHSWCKNNSVILADEMGLGK 517
Query: 788 TVSACAFISSLYCEFKAKLPCLVLVPLSTMPNWLAEFALWAPNLNVVEYHGCAKARAIIR 847
T+ +F+S L+ + + P LV+VPLST+ +W EF +WAP +NVV Y G +R +IR
Sbjct: 518 TIQTISFLSYLFHQHQLYGPFLVVVPLSTLTSWQREFEVWAPEINVVVYIGDLMSRNMIR 577
Query: 848 QYEWHASDPDNLNKKTSSYKFNVLLTTYEMILADSSHLRGVPWEVLVVDEGHRXXXXXXX 907
+YEW ++ ++ KFN L+TTYE++L D + L + W L VDE HR
Sbjct: 578 EYEW-------IHSQSKRLKFNALITTYEILLKDKAVLGSISWAFLGVDEAHRLKNDDSL 630
Query: 908 XXXXXXXXXXQHRVLLTGTPLQNNIGEMYNLLNFLQPASFPSLSSFEEKFNDLTTTQKVE 967
HR+L+TGTPLQN++ E+++LL+F+ P F FEE +
Sbjct: 631 LYKTLIDFKSNHRLLITGTPLQNSLKELWSLLHFIMPEKFEFWEDFEEDHGK-GRENGYQ 689
Query: 968 ELKKLVAPHMLRRLKKDAMQNIPPKTERMVPVELSSIQAEYYRAMLTKNYQILRNIGKGV 1027
L K++ P +LRR+KKD +++P K E+++ VE+S++Q +YY+ +LT+NY+ L +G
Sbjct: 690 SLHKVLEPFLLRRVKKDVEKSLPAKVEQILRVEMSALQKQYYKWILTRNYKALSKGTRG- 748
Query: 1028 AQQSMLNIVMQLRKVCNHPYLI-PGTEPD-SGSVEFLHEMRIKASAKLTLLHSMLKVLYK 1085
+ LNIVM+L+K CNH YLI P E + +E L + I++S KL LL +L L
Sbjct: 749 STSGFLNIVMELKKCCNHCYLIKPPEENERENGIETLQSL-IRSSGKLILLDKLLTRLRD 807
Query: 1086 EGHRVLIFSQMTKLLDILEDYLNIEFGPKTYERVDGSVSVGDRQAAITRFNQDKSR-FVF 1144
G+RVLIFSQM ++LDIL +YL I+ P ++R+DGS+ R+ A+ FN D S F F
Sbjct: 808 RGNRVLIFSQMVRMLDILAEYLTIKHYP--FQRLDGSIKGEIRKQALDHFNADGSEDFCF 865
Query: 1145 LLSTRSCGLGINLATADTVIIYDSDFNPHADIQAMNRAHRIGQSKRLLVYRLVVRASVEE 1204
LLSTR+ GLGINLA+ADTV+I+DSD+NP D+QA RAHRIGQ K++ +YRLV + +VEE
Sbjct: 866 LLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGTVEE 925
Query: 1205 RILQLAKKKLMLDQLFV------------NKSG-------SQKEVEDILRWGTEELFNDS 1245
I++ AKKK++LD L + N SG +++E+ IL++G E+LF +
Sbjct: 926 EIIERAKKKMVLDHLVIQRMDTTGRTVLDNNSGRSNSNPFNKEELTAILKFGAEDLFKE- 984
Query: 1246 PGINGKDMGENNTSIEEAVRDLEQKHRK 1273
+ G++ I+E +R E + +
Sbjct: 985 --LEGEESEPQEMDIDEILRLAETRENE 1010
Score = 116 (45.9 bits), Expect = 4.8e-128, Sum P(4) = 4.8e-128
Identities = 48/172 (27%), Positives = 75/172 (43%)
Query: 486 VDRIQVYRRSVTKECKVTKECKGENAIDLLREDDKDSDPVAVNGKVQDESAVSTEDLGER 545
V R + + SV K K+ + K + + +DD D D + + +A +++ +
Sbjct: 181 VQRRTMAKTSVKKPPKLQRGKKRKRQVSS-EDDDDDEDGETPKRQTRRRAA---KNVSYK 236
Query: 546 NDKMVVEDADVSLRDNEGLTVSEIHITCESTDK--DVDVGKK--TSGSVAKRVQEPAVTE 601
D D+D L + G E E+ +K D+ +GKK T S E
Sbjct: 237 EDDDFETDSD-DLIEMTGEGADEHEDNSETIEKVLDIRLGKKGATGASTTVYATEANGNP 295
Query: 602 SAQVKGKAVSYE--FLVKWVGKSNIHNSWIPESQL---KVLAKRKLENYKAK 648
SA + E +L+KW G S IH++W E L KV +KLEN+K K
Sbjct: 296 SADFDPEKDEGEVHYLIKWKGWSYIHSTWESEESLQQQKVKGLKKLENFKKK 347
Score = 64 (27.6 bits), Expect = 1.4e-122, Sum P(4) = 1.4e-122
Identities = 37/167 (22%), Positives = 69/167 (41%)
Query: 507 KGENAIDLLREDDKDSDPVAVNG-KVQDESAVSTEDLGERNDKMVVEDADVSLRDNEGLT 565
KG + I E ++ V G K + E++ + K+ ED + E
Sbjct: 315 KGWSYIHSTWESEESLQQQKVKGLKKLENFKKKEEEIKQWLAKVSPEDVEYFNCQQE--L 372
Query: 566 VSEIHITCESTDKDVDVGKKTSGSVAKRVQEPAVTESAQVKGKAVSYEFLVKWVGKSNIH 625
SE++ + ++ + V KTS S A PA + K + E+L KW+G
Sbjct: 373 ASELNKQYQIVERVIAV--KTSKSAAGHADFPANSR----KTSSNDPEYLCKWMGLPYAE 426
Query: 626 NSWIPESQLKVLAKRKLENYKAKYGTTVINICDER-WKQPQRVISLR 671
SW E+ + + ++++ + + I D + KQ R ++L+
Sbjct: 427 CSWEDEALISKKFQHCIDSFNNRNNSKTIPTRDCKVLKQRPRFVALK 473
Score = 56 (24.8 bits), Expect = 4.8e-128, Sum P(4) = 4.8e-128
Identities = 25/108 (23%), Positives = 44/108 (40%)
Query: 1265 RDLEQKHRKRGGGLGDVYQDKCT---EGSTKIVWDENAIARLLDR-SNLQSGSTDLAEGD 1320
+DLE+K + G G + + K E V DE+ R S+ QS ++ +
Sbjct: 1327 KDLEKKENMKDGEEGKLKKRKPRVKKENKAPKVKDEHGNELSPPRHSDNQSEEGEVKDDG 1386
Query: 1321 LENDMLGSVKATEWNEETTEDQAESPVAAVDDASAENSERKEENAVTG 1368
L+ + + + N+E E Q S D + ++ K+E G
Sbjct: 1387 LDKSPVKKKQKKKENKENKEKQTSSKKEKESDKEKKKTKEKKEKPKGG 1434
Score = 52 (23.4 bits), Expect = 4.8e-128, Sum P(4) = 4.8e-128
Identities = 27/119 (22%), Positives = 49/119 (41%)
Query: 189 EKSLDSSQVDVSCSTKPENTSAGVPVEGSSSCPNDDDEKQLNASPTDSLADTKFHPAEEV 248
E+ +S+ S ++ E+ S GS S + K+ AS + +AD K EE
Sbjct: 43 EQGSESNSSSESSESQSESESEST---GSKSQQTPPETKEKPASKKERIADVK-KMWEEY 98
Query: 249 LPHSQVTKSEQNDEVPVEKHEKSSTNGSSGIKFVLAIGASERDRKRK--PEVKDEDSQK 305
V +S ++ + P + K + S + G + RK+K E+ E+ +
Sbjct: 99 PDVYGVRRSNRSRQEPSRFNIKDEASSESENESPKRRGQKQVKRKKKWKREISGEEEDE 157
Score = 51 (23.0 bits), Expect = 6.2e-128, Sum P(4) = 6.2e-128
Identities = 14/55 (25%), Positives = 28/55 (50%)
Query: 255 TKSEQNDEVPVEKHEKSSTNGSSGIKFVLAIGASERDRKRKPEVKDEDSQKKLRV 309
++SEQ E E + S ++ S + G+ + ++ PE K++ + KK R+
Sbjct: 36 SESEQGSEQGSESNSSSESSESQSESESESTGS--KSQQTPPETKEKPASKKERI 88
Score = 48 (22.0 bits), Expect = 1.3e-127, Sum P(4) = 1.3e-127
Identities = 29/126 (23%), Positives = 52/126 (41%)
Query: 190 KSLDSSQVDV-SCSTKPENTSAGVPVEGSSSCPNDDDEK-QLNASPTDSLADTKFHPAEE 247
++ D SQ + S + + SA GS S + E+ S ++S +++ +E
Sbjct: 2 RNKDKSQGEEGSVHSNASSHSASEEASGSDSASQSESEQGSEQGSESNSSSESSESQSES 61
Query: 248 VLPHSQVTKSEQND----EVPVEKHEKSSTNGSSGIKFVLAIGASERDRKRK-PE---VK 299
S +KS+Q E P K E+ + ++ G +R R+ P +K
Sbjct: 62 E-SESTGSKSQQTPPETKEKPASKKERIADVKKMWEEYPDVYGVRRSNRSRQEPSRFNIK 120
Query: 300 DEDSQK 305
DE S +
Sbjct: 121 DEASSE 126
Score = 38 (18.4 bits), Expect = 4.1e-121, Sum P(4) = 4.1e-121
Identities = 7/14 (50%), Positives = 10/14 (71%)
Query: 289 ERDRKRKPEVKDED 302
+R +KRK +V ED
Sbjct: 198 QRGKKRKRQVSSED 211
>UNIPROTKB|O14647 [details] [associations]
symbol:CHD2 "Chromodomain-helicase-DNA-binding protein 2"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=TAS] [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=TAS] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298
SMART:SM00490 Pfam:PF00385 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0006357 GO:GO:0004003 EMBL:CH471101
InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
InterPro:IPR023779 PROSITE:PS00598 HOVERGEN:HBG005325
InterPro:IPR025260 Pfam:PF13907 KO:K11367 HOGENOM:HOG000207917
EMBL:AF006514 EMBL:BT007050 EMBL:FJ515838 EMBL:AC013394
EMBL:BC007347 EMBL:CR978407 IPI:IPI00023109 IPI:IPI00815893
RefSeq:NP_001036037.1 RefSeq:NP_001262.3 UniGene:Hs.220864
ProteinModelPortal:O14647 SMR:O14647 IntAct:O14647 STRING:O14647
PhosphoSite:O14647 PaxDb:O14647 PRIDE:O14647 DNASU:1106
Ensembl:ENST00000394196 Ensembl:ENST00000420239
Ensembl:ENST00000557381 GeneID:1106 KEGG:hsa:1106 UCSC:uc002bso.1
UCSC:uc002bsp.3 CTD:1106 GeneCards:GC15P093533 HGNC:HGNC:1917
MIM:602119 neXtProt:NX_O14647 PharmGKB:PA26453 InParanoid:O14647
OMA:AHSWCKN OrthoDB:EOG4QRH36 ChiTaRS:CHD2 GenomeRNAi:1106
NextBio:4584 ArrayExpress:O14647 Bgee:O14647 CleanEx:HS_CHD2
Genevestigator:O14647 GermOnline:ENSG00000173575 Uniprot:O14647
Length = 1828
Score = 1092 (389.5 bits), Expect = 1.1e-126, Sum P(5) = 1.1e-126
Identities = 240/551 (43%), Positives = 339/551 (61%)
Query: 679 EAFVKWTGLPYDECTWEKLDEPAL-EKYSHLTDLFVQFERQTLKKDASEDELPRGKGDCQ 737
E KW GLPY EC+WE DE + +K+ + D F + K E K Q
Sbjct: 412 EYLCKWMGLPYSECSWE--DEALIGKKFQNCID---SFHSRNNSKTIPTRECKALK---Q 463
Query: 738 QSEIVALTEQPEELKGG--ALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFI 795
+ VAL +QP L G L +QLE LNWL W K+ +VILADEMGLGKT+ +F+
Sbjct: 464 RPRFVALKKQPAYLGGENLELRDYQLEGLNWLAHSWCKNNSVILADEMGLGKTIQTISFL 523
Query: 796 SSLYCEFKAKLPCLVLVPLSTMPNWLAEFALWAPNLNVVEYHGCAKARAIIRQYEWHASD 855
S L+ + + P L++VPLST+ +W EF +WAP +NVV Y G +R IR+YEW
Sbjct: 524 SYLFHQHQLYGPFLIVVPLSTLTSWQREFEIWAPEINVVVYIGDLMSRNTIREYEW---- 579
Query: 856 PDNLNKKTSSYKFNVLLTTYEMILADSSHLRGVPWEVLVVDEGHRXXXXXXXXXXXXXXX 915
++ +T KFN L+TTYE++L D + L + W L VDE HR
Sbjct: 580 ---IHSQTKRLKFNALITTYEILLKDKTVLGSINWAFLGVDEAHRLKNDDSLLYKTLIDF 636
Query: 916 XXQHRVLLTGTPLQNNIGEMYNLLNFLQPASFPSLSSFEEKFNDLTTTQKVEELKKLVAP 975
HR+L+TGTPLQN++ E+++LL+F+ P F FEE + L K++ P
Sbjct: 637 KSNHRLLITGTPLQNSLKELWSLLHFIMPEKFEFWEDFEEDHGK-GRENGYQSLHKVLEP 695
Query: 976 HMLRRLKKDAMQNIPPKTERMVPVELSSIQAEYYRAMLTKNYQILRNIGKGVAQQSMLNI 1035
+LRR+KKD +++P K E+++ VE+S++Q +YY+ +LT+NY+ L +G + LNI
Sbjct: 696 FLLRRVKKDVEKSLPAKVEQILRVEMSALQKQYYKWILTRNYKALAKGTRG-STSGFLNI 754
Query: 1036 VMQLRKVCNHPYLI-PGTEPD-SGSVEFLHEMRIKASAKLTLLHSMLKVLYKEGHRVLIF 1093
VM+L+K CNH YLI P E + E L + I++S KL LL +L L + G+RVLIF
Sbjct: 755 VMELKKCCNHCYLIKPPEENERENGQEILLSL-IRSSGKLILLDKLLTRLRERGNRVLIF 813
Query: 1094 SQMTKLLDILEDYLNIEFGPKTYERVDGSVSVGDRQAAITRFNQDKSR-FVFLLSTRSCG 1152
SQM ++LDIL +YL I+ P ++R+DGS+ R+ A+ FN D S F FLLSTR+ G
Sbjct: 814 SQMVRMLDILAEYLTIKHYP--FQRLDGSIKGEIRKQALDHFNADGSEDFCFLLSTRAGG 871
Query: 1153 LGINLATADTVIIYDSDFNPHADIQAMNRAHRIGQSKRLLVYRLVVRASVEERILQLAKK 1212
LGINLA+ADTV+I+DSD+NP D+QA RAHRIGQ K++ +YRLV + +VEE I++ AKK
Sbjct: 872 LGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGTVEEEIIERAKK 931
Query: 1213 KLMLDQLFVNK 1223
K++LD L + +
Sbjct: 932 KMVLDHLVIQR 942
Score = 108 (43.1 bits), Expect = 1.1e-126, Sum P(5) = 1.1e-126
Identities = 48/170 (28%), Positives = 73/170 (42%)
Query: 488 RIQVYRRSVTKECKVTKECKGENAIDLLREDDKDSDPVAVNGKVQDESAVSTEDLGERND 547
R V RR+V K +V K+ K + ++D D D + + +++ + D
Sbjct: 178 RRPVPRRTVPKP-RVKKQPKTQRG-KRKKQDSSDEDDDDDEAPKRQTRRRAAKNVSYKED 235
Query: 548 KMVVEDADVSLRDNEGLTVSEIHITCESTDKDVD--VGKK--TSGSVAKRVQEPAVTESA 603
D+D L + G V E E+ +K +D +GKK T S E S
Sbjct: 236 DDFETDSD-DLIEMTGEGVDEQQDNSETIEKVLDSRLGKKGATGASTTVYAIEANGDPSG 294
Query: 604 QVKGKAVSYE--FLVKWVGKSNIHNSWIPESQL---KVLAKRKLENYKAK 648
+ E +L+KW G S IH++W E L KV +KLEN+K K
Sbjct: 295 DFDTEKDEGEIQYLIKWKGWSYIHSTWESEESLQQQKVKGLKKLENFKKK 344
Score = 59 (25.8 bits), Expect = 1.4e-121, Sum P(5) = 1.4e-121
Identities = 35/167 (20%), Positives = 70/167 (41%)
Query: 507 KGENAIDLLREDDKDSDPVAVNGKVQDESAVSTED-LGERNDKMVVEDADVSLRDNEGLT 565
KG + I E ++ V G + E+ ED + + K+ ED + E
Sbjct: 312 KGWSYIHSTWESEESLQQQKVKGLKKLENFKKKEDEIKQWLGKVSPEDVEYFNCQQE--L 369
Query: 566 VSEIHITCESTDKDVDVGKKTSGSVAKRVQEPAVTESAQVKGKAVSYEFLVKWVGKSNIH 625
SE++ + ++ + V KTS S + PA + + E+L KW+G
Sbjct: 370 ASELNKQYQIVERVIAV--KTSKSTLGQTDFPAHSRKPAPSNEP---EYLCKWMGLPYSE 424
Query: 626 NSWIPESQLKVLAKRKLENYKAKYGTTVINICD-ERWKQPQRVISLR 671
SW E+ + + ++++ ++ + I + + KQ R ++L+
Sbjct: 425 CSWEDEALIGKKFQNCIDSFHSRNNSKTIPTRECKALKQRPRFVALK 471
Score = 53 (23.7 bits), Expect = 1.1e-126, Sum P(5) = 1.1e-126
Identities = 12/48 (25%), Positives = 27/48 (56%)
Query: 1226 SQKEVEDILRWGTEELFNDSPGINGKDMGENNTSIEEAVRDLEQKHRK 1273
+++E+ IL++G E+LF + + G++ I+E +R E + +
Sbjct: 964 NKEELTAILKFGAEDLFKE---LEGEESEPQEMDIDEILRLAETRENE 1008
Score = 50 (22.7 bits), Expect = 1.1e-126, Sum P(5) = 1.1e-126
Identities = 28/112 (25%), Positives = 48/112 (42%)
Query: 193 DSSQVDVSCSTKPENTSAGVPVEGSSSCPNDDDEKQLNASPTDSLADTKFHPAEEVLPHS 252
+S+ S ++ E+ S GS S P + K+ AS + +AD K EE
Sbjct: 52 ESNSSSESSESQSESESESA---GSKSQPVLPEAKEKPASKKERIADVK-KMWEEYPDVY 107
Query: 253 QVTKSEQNDEVPVEKHEKSSTNGSSGIKFVLAIGASERDRKRKPEVKDEDSQ 304
V +S ++ + P + K SSG + +R K++ + K E S+
Sbjct: 108 GVRRSNRSRQEPSRFNIKEEA--SSGSESGSPKRRGQRQLKKQEKWKQEPSE 157
Score = 44 (20.5 bits), Expect = 4.5e-126, Sum P(5) = 4.5e-126
Identities = 25/91 (27%), Positives = 41/91 (45%)
Query: 225 DEKQLNASPTDSLADTKFHPAEEVLPHSQV---TKSEQNDEVPVEKH--EKSSTNGSSGI 279
D+ Q S S A + H A E S ++SEQ + P H E +S++ SS
Sbjct: 6 DKSQEEDSSLHSNASS--HSASEEASGSDSGSQSESEQGSD-PGSGHGSESNSSSESSES 62
Query: 280 KFVL-AIGASERDRKRKPEVKDEDSQKKLRV 309
+ + A + + PE K++ + KK R+
Sbjct: 63 QSESESESAGSKSQPVLPEAKEKPASKKERI 93
Score = 43 (20.2 bits), Expect = 1.1e-126, Sum P(5) = 1.1e-126
Identities = 21/82 (25%), Positives = 37/82 (45%)
Query: 1297 ENAIARLLDRSNLQSGS---TD--LAEGDLENDML--GSVKATEW---NEETTEDQAESP 1346
EN + RL + ++ S +D EG++++D L +K + N+E E Q S
Sbjct: 1349 ENKVPRLKEEHGIELSSPRHSDNPSEEGEVKDDGLEKSPMKKKQKKKENKENKEKQMSSR 1408
Query: 1347 VAAVDDASAENSERKEENAVTG 1368
D + S+ K+E +G
Sbjct: 1409 KDKEGDKERKKSKDKKEKPKSG 1430
Score = 41 (19.5 bits), Expect = 3.0e-116, Sum P(4) = 3.0e-116
Identities = 9/28 (32%), Positives = 16/28 (57%)
Query: 517 EDDKDSDPVAVNGKVQDESAVSTEDLGE 544
E ++ SDP + +G + S+ S+E E
Sbjct: 38 ESEQGSDPGSGHGSESNSSSESSESQSE 65
Score = 40 (19.1 bits), Expect = 1.6e-120, Sum P(5) = 1.6e-120
Identities = 34/158 (21%), Positives = 61/158 (38%)
Query: 147 KSQSGVKSSGADKVSQIFGNSIL--ARKRSNKGKSVLALGVKSLEKSLDSSQVDVSCSTK 204
+SQS +S A SQ +L A+++ K +A K E+ D V S ++
Sbjct: 61 ESQSESESESAGSKSQ----PVLPEAKEKPASKKERIADVKKMWEEYPDVYGVRRSNRSR 116
Query: 205 PENTSAGVPVEGSSSCPNDDDEKQLNASPTDSLADTKFHPAEEVLPHSQVTKSEQNDEVP 264
E + + E SS + +++ K P+E+ Q T +E E
Sbjct: 117 QEPSRFNIKEEASSGSESGSPKRR-GQRQLKKQEKWKQEPSED--EQEQGTSAESEPEQK 173
Query: 265 VEKHEKSSTNGSSGIKFVLAIGASERDRKRKPEVKDED 302
K + + V ++R +++K + DED
Sbjct: 174 KVKARRPVPRRTVPKPRVKKQPKTQRGKRKKQDSSDED 211
>UNIPROTKB|I3LRQ2 [details] [associations]
symbol:CHD2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
GeneTree:ENSGT00560000076896 EMBL:CT954235 EMBL:CU466964
Ensembl:ENSSSCT00000027293 Uniprot:I3LRQ2
Length = 1051
Score = 1108 (395.1 bits), Expect = 8.2e-126, Sum P(3) = 8.2e-126
Identities = 256/620 (41%), Positives = 367/620 (59%)
Query: 679 EAFVKWTGLPYDECTWEKLDEPAL-EKYSHLTDLFVQFERQTLKKDASEDELPRGKGDCQ 737
E KW GLPY EC+WE DE + +K+ D F + K E K Q
Sbjct: 414 EYLCKWMGLPYSECSWE--DEALIGKKFQSCID---SFHSRNNSKTIPTRECKALK---Q 465
Query: 738 QSEIVALTEQPEELKGG--ALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFI 795
+ VAL +QP L G L +QLE LNWL W KS +VILADEMGLGKT+ +F+
Sbjct: 466 RPRFVALKKQPAYLGGENLELRDYQLEGLNWLAHSWCKSNSVILADEMGLGKTIQTISFL 525
Query: 796 SSLYCEFKAKLPCLVLVPLSTMPNWLAEFALWAPNLNVVEYHGCAKARAIIRQYEWHASD 855
S L+ + + P L++VPLST+ +W EF +WAP +NVV Y G +R IR+YEW
Sbjct: 526 SYLFHQHQLYGPFLIVVPLSTLTSWQREFEIWAPEINVVVYIGDLMSRNTIREYEW---- 581
Query: 856 PDNLNKKTSSYKFNVLLTTYEMILADSSHLRGVPWEVLVVDEGHRXXXXXXXXXXXXXXX 915
++ +T KFN L+TTYE++L D + L + W L VDE HR
Sbjct: 582 ---IHSQTKRLKFNALITTYEILLKDKTVLGSINWAFLGVDEAHRLKNDDSLLYKTLIDF 638
Query: 916 XXQHRVLLTGTPLQNNIGEMYNLLNFLQPASFPSLSSFEEKFNDLTTTQKVEELKKLVAP 975
HR+L+TGTPLQN++ E+++LL+F+ P F FEE + L K++ P
Sbjct: 639 KSNHRLLITGTPLQNSLKELWSLLHFIMPEKFEFWEDFEEDHGK-GRENGYQSLHKVLEP 697
Query: 976 HMLRRLKKDAMQNIPPKTERMVPVELSSIQAEYYRAMLTKNYQILRNIGKGVAQQSMLNI 1035
+LRR+KKD +++P K E+++ VE+S++Q +YY+ +LT+NY+ L +G + LNI
Sbjct: 698 FLLRRVKKDVEKSLPAKVEQILRVEMSALQKQYYKWILTRNYKALAKGTRG-STSGFLNI 756
Query: 1036 VMQLRKVCNHPYLI-PGTEPD-SGSVEFLHEMRIKASAKLTLLHSMLKVLYKEGHRVLIF 1093
VM+L+K CNH YLI P E + E L + I++S KL LL +L L + G+RVLIF
Sbjct: 757 VMELKKCCNHCYLIKPPEENERENGQEILLSL-IRSSGKLILLDKLLTRLRERGNRVLIF 815
Query: 1094 SQMTKLLDILEDYLNIEFGPKTYERVDGSVSVGDRQAAITRFNQDKSR-FVFLLSTRSCG 1152
SQM ++LDIL +YL I+ P ++R+DGS+ R+ A+ FN D S F FLLSTR+ G
Sbjct: 816 SQMVRMLDILAEYLTIKHYP--FQRLDGSIKGEIRKQALDHFNADGSEDFCFLLSTRAGG 873
Query: 1153 LGINLATADTVIIYDSDFNPHADIQAMNRAHRIGQSKRLLVYRLVVRASVEERILQLAKK 1212
LGINLA+ADTV+I+DSD+NP D+QA RAHRIGQ K++ +YRLV + +VEE I++ AKK
Sbjct: 874 LGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGTVEEEIIERAKK 933
Query: 1213 KLMLDQLFV------------NKSG-------SQKEVEDILRWGTEELFNDSPGINGKDM 1253
K++LD L + N SG +++E+ IL++G E+LF + + G++
Sbjct: 934 KMVLDHLVIQRMDTTGRTVLENNSGRSNSNPFNKEELTAILKFGAEDLFKE---LEGEES 990
Query: 1254 GENNTSIEEAVRDLEQKHRK 1273
I+E +R E + +
Sbjct: 991 EPQEMDIDEILRLAETRENE 1010
Score = 113 (44.8 bits), Expect = 8.2e-126, Sum P(3) = 8.2e-126
Identities = 50/174 (28%), Positives = 80/174 (45%)
Query: 488 RIQVYRRSVTKECKVTKECKGENAIDLLRE--DDKDSDPVAVNGKVQDESAVSTEDLGER 545
R V RR+V K +V K+ K + ++ DD D D A + + +A +++ +
Sbjct: 177 RRPVPRRTVPKP-RVKKQPKTQRGKRKKQDSSDDDDEDDEAPKRQTRRRAA---KNVSYK 232
Query: 546 NDKMVVEDADVSLRDNEGLTVSEIHITCESTDKDVD--VGKKTSGSVAKRVQEPAVTESA 603
D D+D L + G V E E+ +K +D +GKK + + V A+ +
Sbjct: 233 EDDDFETDSD-DLIEMTGEGVDEQQDNSETIEKVLDSRLGKKGATGASTTVY--AIEANG 289
Query: 604 QVKGKAVS------YEFLVKWVGKSNIHNSWIPESQL---KVLAKRKLENYKAK 648
G S ++L+KW G S IH++W E L KV +KLEN+K K
Sbjct: 290 DPSGDFDSEKDEGEVQYLIKWKGWSYIHSTWESEESLQQQKVKGLKKLENFKKK 343
Score = 61 (26.5 bits), Expect = 2.5e-120, Sum P(3) = 2.5e-120
Identities = 34/167 (20%), Positives = 70/167 (41%)
Query: 507 KGENAIDLLREDDKDSDPVAVNGKVQDESAVSTED-LGERNDKMVVEDADVSLRDNEGLT 565
KG + I E ++ V G + E+ ED + + K+ ED + E
Sbjct: 311 KGWSYIHSTWESEESLQQQKVKGLKKLENFKKKEDEIKQWLGKVSPEDVEYFNCQQE--L 368
Query: 566 VSEIHITCESTDKDVDVGKKTSGSVAKRVQEPAVTESAQVKGKAVSYEFLVKWVGKSNIH 625
SE++ + ++ + V KTS S + P ++ + E+L KW+G
Sbjct: 369 ASELNKQYQIVERVIAV--KTSKSTLGQTDFPGEIAHSRKPAPSNEPEYLCKWMGLPYSE 426
Query: 626 NSWIPESQLKVLAKRKLENYKAKYGTTVINICD-ERWKQPQRVISLR 671
SW E+ + + ++++ ++ + I + + KQ R ++L+
Sbjct: 427 CSWEDEALIGKKFQSCIDSFHSRNNSKTIPTRECKALKQRPRFVALK 473
Score = 50 (22.7 bits), Expect = 8.2e-126, Sum P(3) = 8.2e-126
Identities = 31/116 (26%), Positives = 51/116 (43%)
Query: 193 DSSQVDVSCSTKPENTSAGVPVEGSSSCPNDDDEKQLNASPTDSLADTKFHPAEEVLPHS 252
+S+ S ++ E+ S GS S P + K+ AS + +AD K EE
Sbjct: 51 ESNSSSESSESQSESESESA---GSKSQPVLPEAKEKPASKKERIADVK-KMWEEYPDVY 106
Query: 253 QVTKSEQNDEVPVE---KHEKSSTNGSSGIKFVLAIGASERDR-KRKPEVKDEDSQ 304
V +S ++ + P K E SS + S K ++++ KR+P +DE Q
Sbjct: 107 GVRRSNRSRQEPSRFNIKEEASSGSESGSPKRRGQRQLKKQEKWKREPS-EDEQEQ 161
Score = 47 (21.6 bits), Expect = 5.1e-120, Sum P(3) = 5.1e-120
Identities = 56/253 (22%), Positives = 94/253 (37%)
Query: 225 DEKQLNASPTDSLADTKFHPAEEVLPHSQV---TKSEQNDEVPVEKH--EKSSTNGSSGI 279
D+ Q S S A + H A E S ++SEQ + P H E +S++ SS
Sbjct: 5 DKSQEEDSSLHSNASS--HSASEEASGSDSGSQSESEQGSD-PGSGHGSESNSSSESSES 61
Query: 280 KFVL-AIGASERDRKRKPEVKDEDSQKKLRVDXXXXXXXXXXXXXXXIGTLSPGTSKLHE 338
+ + A + + PE K++ + KK R+ G S+ E
Sbjct: 62 QSESESESAGSKSQPVLPEAKEKPASKKERI---ADVKKMWEEYPDVYGVRRSNRSR-QE 117
Query: 339 KQRTNNDEVSASLCEVDVGTKGLDAQRKDELAEE-TTDPLDKSDKAGVHVNEIPLCKDIV 397
R N E ++S E G+ QR+ + E+ +P + + G P K +
Sbjct: 118 PSRFNIKEEASSGSES--GSPKRRGQRQLKKQEKWKREPSEDEQEQGTSAESEPEQKKVK 175
Query: 398 PFELQQVDRVLGCRVKGDD-TSSSCHISATATDDRHSDDFLVSENHNKILEENLACDTDL 456
V RVK T ++DD DD + +N++ D
Sbjct: 176 ARRPVPRRTVPKPRVKKQPKTQRGKRKKQDSSDDDDEDDEAPKRQTRRRAAKNVSYKEDD 235
Query: 457 DAEV-TENLAELS 468
D E +++L E++
Sbjct: 236 DFETDSDDLIEMT 248
Score = 41 (19.5 bits), Expect = 1.8e-114, Sum P(2) = 1.8e-114
Identities = 9/28 (32%), Positives = 16/28 (57%)
Query: 517 EDDKDSDPVAVNGKVQDESAVSTEDLGE 544
E ++ SDP + +G + S+ S+E E
Sbjct: 37 ESEQGSDPGSGHGSESNSSSESSESQSE 64
Score = 37 (18.1 bits), Expect = 1.9e-124, Sum P(3) = 1.9e-124
Identities = 13/45 (28%), Positives = 19/45 (42%)
Query: 29 PGLSNGKEENLVTSESPRNTPSAKRRLKNEINADRSSTKKKGNDG 73
P N KEE SES +R+LK + R ++ + G
Sbjct: 118 PSRFNIKEEASSGSESGSPKRRGQRQLKKQEKWKREPSEDEQEQG 162
>UNIPROTKB|J9NSS6 [details] [associations]
symbol:CHD2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
GeneTree:ENSGT00560000076896 EMBL:AAEX03002279 EMBL:AAEX03002280
Ensembl:ENSCAFT00000043290 Uniprot:J9NSS6
Length = 1379
Score = 1107 (394.7 bits), Expect = 1.0e-125, Sum P(3) = 1.0e-125
Identities = 256/620 (41%), Positives = 367/620 (59%)
Query: 679 EAFVKWTGLPYDECTWEKLDEPAL-EKYSHLTDLFVQFERQTLKKDASEDELPRGKGDCQ 737
E KW GLPY EC+WE DE + +K+ D F + K E K Q
Sbjct: 412 EYLCKWMGLPYSECSWE--DEALIGKKFQSCID---SFHSRNNSKTIPTRECKALK---Q 463
Query: 738 QSEIVALTEQPEELKGG--ALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFI 795
+ VAL +QP L G L +QLE LNWL W KS +VILADEMGLGKT+ +F+
Sbjct: 464 RPRFVALKKQPTYLGGENLELRDYQLEGLNWLAHSWCKSNSVILADEMGLGKTIQTISFL 523
Query: 796 SSLYCEFKAKLPCLVLVPLSTMPNWLAEFALWAPNLNVVEYHGCAKARAIIRQYEWHASD 855
S L+ + + P L++VPLST+ +W EF +WAP +NVV Y G +R IR+YEW
Sbjct: 524 SYLFHQHQLYGPFLIVVPLSTLTSWQREFEIWAPEINVVVYIGDLMSRNTIREYEW---- 579
Query: 856 PDNLNKKTSSYKFNVLLTTYEMILADSSHLRGVPWEVLVVDEGHRXXXXXXXXXXXXXXX 915
++ +T KFN L+TTYE++L D + L + W L VDE HR
Sbjct: 580 ---IHSQTKRLKFNALITTYEILLKDKTVLGSINWAFLGVDEAHRLKNDDSLLYKTLIDF 636
Query: 916 XXQHRVLLTGTPLQNNIGEMYNLLNFLQPASFPSLSSFEEKFNDLTTTQKVEELKKLVAP 975
HR+L+TGTPLQN++ E+++LL+F+ P F FEE + L K++ P
Sbjct: 637 KSHHRLLITGTPLQNSLKELWSLLHFIMPEKFEFWEDFEEDHGK-GRENGYQSLHKVLEP 695
Query: 976 HMLRRLKKDAMQNIPPKTERMVPVELSSIQAEYYRAMLTKNYQILRNIGKGVAQQSMLNI 1035
+LRR+KKD +++P K E+++ VE+S++Q +YY+ +LT+NY+ L +G + LNI
Sbjct: 696 FLLRRVKKDVEKSLPAKVEQILRVEMSALQKQYYKWILTRNYKALAKGTRG-STSGFLNI 754
Query: 1036 VMQLRKVCNHPYLI-PGTEPD-SGSVEFLHEMRIKASAKLTLLHSMLKVLYKEGHRVLIF 1093
VM+L+K CNH YLI P E + E L + I++S KL LL +L L + G+RVLIF
Sbjct: 755 VMELKKCCNHCYLIKPPEENERENGQEVLLSL-IRSSGKLILLDKLLTRLRERGNRVLIF 813
Query: 1094 SQMTKLLDILEDYLNIEFGPKTYERVDGSVSVGDRQAAITRFNQDKSR-FVFLLSTRSCG 1152
SQM ++LDIL +YL I+ P ++R+DGS+ R+ A+ FN D S F FLLSTR+ G
Sbjct: 814 SQMVRMLDILAEYLTIKHYP--FQRLDGSIKGEIRKQALDHFNADGSEDFCFLLSTRAGG 871
Query: 1153 LGINLATADTVIIYDSDFNPHADIQAMNRAHRIGQSKRLLVYRLVVRASVEERILQLAKK 1212
LGINLA+ADTV+I+DSD+NP D+QA RAHRIGQ K++ +YRLV + +VEE I++ AKK
Sbjct: 872 LGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGTVEEEIIERAKK 931
Query: 1213 KLMLDQLFV------------NKSG-------SQKEVEDILRWGTEELFNDSPGINGKDM 1253
K++LD L + N SG +++E+ IL++G E+LF + + G++
Sbjct: 932 KMVLDHLVIQRMDTTGRTVLENNSGRSNSNPFNKEELTAILKFGAEDLFKE---LEGEES 988
Query: 1254 GENNTSIEEAVRDLEQKHRK 1273
I+E +R E + +
Sbjct: 989 EPQEMDIDEILRLAETRENE 1008
Score = 113 (44.8 bits), Expect = 1.0e-125, Sum P(3) = 1.0e-125
Identities = 50/186 (26%), Positives = 82/186 (44%)
Query: 474 SSDEECMKNDIGVDRIQVYRRSVTKECKVTKECKGENAIDLLREDDKDSDPVAVNGKVQD 533
S++ E + + R V RR+V K +V K+ K + R+D D D +
Sbjct: 165 SAESEAEQKKVKARR-PVPRRTVPKP-RVKKQPKTQRG-KRKRQDSSDDDDEDDEAPKRQ 221
Query: 534 ESAVSTEDLGERNDKMVVEDADVSLRDNEGLTVSEIHITCESTDKDVD--VGKKTSGSVA 591
+ +++ + D D+D L + G E E+ +K +D +GKK + +
Sbjct: 222 TRRRAAKNVSYKEDDDFETDSD-DLIEMTGEGADEQQDNSETIEKVLDSRLGKKGATGAS 280
Query: 592 KRVQEPAVTESAQVKG-----KAVS-YEFLVKWVGKSNIHNSWIPESQL---KVLAKRKL 642
V A+ + G K S ++L+KW G S IH++W E L KV +KL
Sbjct: 281 TTVY--AIEANGDPSGDFDTEKDESEVQYLIKWKGWSYIHSTWESEESLQQQKVKGLKKL 338
Query: 643 ENYKAK 648
EN+K K
Sbjct: 339 ENFKKK 344
Score = 58 (25.5 bits), Expect = 6.5e-120, Sum P(3) = 6.5e-120
Identities = 35/167 (20%), Positives = 70/167 (41%)
Query: 507 KGENAIDLLREDDKDSDPVAVNGKVQDESAVSTED-LGERNDKMVVEDADVSLRDNEGLT 565
KG + I E ++ V G + E+ ED + + K+ ED + E
Sbjct: 312 KGWSYIHSTWESEESLQQQKVKGLKKLENFKKKEDEIKQWLGKVSPEDVEYFNCQQE--L 369
Query: 566 VSEIHITCESTDKDVDVGKKTSGSVAKRVQEPAVTESAQVKGKAVSYEFLVKWVGKSNIH 625
SE++ + ++ + V KTS S + PA + + E+L KW+G
Sbjct: 370 ASELNKQYQIVERVIAV--KTSKSTLGQTDFPAHSRKPAPSNEP---EYLCKWMGLPYSE 424
Query: 626 NSWIPESQLKVLAKRKLENYKAKYGTTVINICD-ERWKQPQRVISLR 671
SW E+ + + ++++ ++ + I + + KQ R ++L+
Sbjct: 425 CSWEDEALIGKKFQSCIDSFHSRNNSKTIPTRECKALKQRPRFVALK 471
Score = 50 (22.7 bits), Expect = 1.0e-125, Sum P(3) = 1.0e-125
Identities = 31/116 (26%), Positives = 51/116 (43%)
Query: 193 DSSQVDVSCSTKPENTSAGVPVEGSSSCPNDDDEKQLNASPTDSLADTKFHPAEEVLPHS 252
+S+ S ++ E+ S GS S P + K+ AS + +AD K EE
Sbjct: 52 ESNSSSESSESQSESESESA---GSKSQPVLPEAKEKPASKKERIADVK-KMWEEYPDVY 107
Query: 253 QVTKSEQNDEVPVE---KHEKSSTNGSSGIKFVLAIGASERDR-KRKPEVKDEDSQ 304
V +S ++ + P K E SS + S K ++++ KR+P +DE Q
Sbjct: 108 GVRRSNRSRQEPSRFNIKEEASSGSESGSPKRRGQRQLKKQEKWKREPS-EDEQEQ 162
Score = 44 (20.5 bits), Expect = 4.5e-125, Sum P(3) = 4.5e-125
Identities = 25/91 (27%), Positives = 41/91 (45%)
Query: 225 DEKQLNASPTDSLADTKFHPAEEVLPHSQV---TKSEQNDEVPVEKH--EKSSTNGSSGI 279
D+ Q S S A + H A E S ++SEQ + P H E +S++ SS
Sbjct: 6 DKSQEEDSSLHSNASS--HSASEEASGSDSGSQSESEQGSD-PGSGHGSESNSSSESSES 62
Query: 280 KFVL-AIGASERDRKRKPEVKDEDSQKKLRV 309
+ + A + + PE K++ + KK R+
Sbjct: 63 QSESESESAGSKSQPVLPEAKEKPASKKERI 93
Score = 41 (19.5 bits), Expect = 2.3e-114, Sum P(2) = 2.3e-114
Identities = 9/28 (32%), Positives = 16/28 (57%)
Query: 517 EDDKDSDPVAVNGKVQDESAVSTEDLGE 544
E ++ SDP + +G + S+ S+E E
Sbjct: 38 ESEQGSDPGSGHGSESNSSSESSESQSE 65
Score = 37 (18.1 bits), Expect = 2.5e-124, Sum P(3) = 2.5e-124
Identities = 13/45 (28%), Positives = 19/45 (42%)
Query: 29 PGLSNGKEENLVTSESPRNTPSAKRRLKNEINADRSSTKKKGNDG 73
P N KEE SES +R+LK + R ++ + G
Sbjct: 119 PSRFNIKEEASSGSESGSPKRRGQRQLKKQEKWKREPSEDEQEQG 163
>UNIPROTKB|D4AD08 [details] [associations]
symbol:Chd2 "Chromodomain helicase DNA binding protein 2
(Predicted)" species:10116 "Rattus norvegicus" [GO:0003677 "DNA
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013
PROSITE:PS51194 SMART:SM00298 SMART:SM00490 Pfam:PF00385
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 EMBL:CH473980
GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780 InterPro:IPR023779
PROSITE:PS00598 InterPro:IPR025260 Pfam:PF13907
GeneTree:ENSGT00560000076896 KO:K11367 CTD:1106 OrthoDB:EOG4QRH36
IPI:IPI00778855 RefSeq:NP_001100993.1 UniGene:Rn.225034
Ensembl:ENSRNOT00000055829 GeneID:308738 KEGG:rno:308738
RGD:1310056 NextBio:659434 Uniprot:D4AD08
Length = 1834
Score = 1112 (396.5 bits), Expect = 1.1e-125, Sum P(4) = 1.1e-125
Identities = 258/621 (41%), Positives = 370/621 (59%)
Query: 679 EAFVKWTGLPYDECTWEKLDEPAL-EKYSHLTDLFVQFERQTLKKDASEDELPRGKGDCQ 737
E KW GLPY EC+WE DE + +K+ D F + K E K Q
Sbjct: 419 EYLCKWMGLPYSECSWE--DEALIGKKFQSCID---SFHSRNNSKTIPTRECKALK---Q 470
Query: 738 QSEIVALTEQPEELKGG--ALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFI 795
+ VAL +QP L G L +QLE LNWL W KS +VILADEMGLGKT+ +F+
Sbjct: 471 RPRFVALKKQPAYLGGENLELRDYQLEGLNWLAHSWCKSNSVILADEMGLGKTIQTISFL 530
Query: 796 SSLYCEFKAKLPCLVLVPLSTMPNWLAEFALWAPNLNVVEYHGCAKARAIIRQYEWHASD 855
S L+ + + P L++VPLST+ +W EF +WAP +NVV Y G +R IR+YEW
Sbjct: 531 SYLFHQHQLYGPFLIVVPLSTLTSWQREFEIWAPEVNVVVYIGDLMSRNTIREYEW---- 586
Query: 856 PDNLNKKTSSYKFNVLLTTYEMILADSSHLRGVPWEVLVVDEGHRXXXXXXXXXXXXXXX 915
++ +T KFN L+TTYE++L D + L + W L VDE HR
Sbjct: 587 ---IHSQTKRLKFNALITTYEILLKDKTVLGSINWAFLGVDEAHRLKNDDSLLYKTLIDF 643
Query: 916 XXQHRVLLTGTPLQNNIGEMYNLLNFLQPASFPSLSSFEEKFNDLTTTQKVEELKKLVAP 975
HR+L+TGTPLQN++ E+++LL+F+ P F FEE + L K++ P
Sbjct: 644 KSNHRLLITGTPLQNSLKELWSLLHFIMPEKFEFWEDFEEDHGK-GRENGYQSLHKVLEP 702
Query: 976 HMLRRLKKDAMQNIPPKTERMVPVELSSIQAEYYRAMLTKNYQILRNIGKGVAQQSMLNI 1035
+LRR+KKD +++P K E+++ VE+S++Q +YY+ +LT+NY+ L +G + LNI
Sbjct: 703 FLLRRVKKDVEKSLPAKVEQILRVEMSALQKQYYKWILTRNYKALAKGTRG-STSGFLNI 761
Query: 1036 VMQLRKVCNHPYLI--P-GTEPDSGSVEFLHEMRIKASAKLTLLHSMLKVLYKEGHRVLI 1092
VM+L+K CNH YLI P +E ++G E L + I++S KL LL +L L + G+RVLI
Sbjct: 762 VMELKKCCNHCYLIRAPEDSERETGQ-EVLQSL-IRSSGKLILLDKLLTRLRERGNRVLI 819
Query: 1093 FSQMTKLLDILEDYLNIEFGPKTYERVDGSVSVGDRQAAITRFNQDKSR-FVFLLSTRSC 1151
FSQM ++LDIL +YL I+ P ++R+DGS+ R+ A+ FN D S F FLLSTR+
Sbjct: 820 FSQMVRMLDILAEYLTIKHYP--FQRLDGSIKGEIRKQALDHFNADGSEDFCFLLSTRAG 877
Query: 1152 GLGINLATADTVIIYDSDFNPHADIQAMNRAHRIGQSKRLLVYRLVVRASVEERILQLAK 1211
GLGINLA+ADTV+I+DSD+NP D+QA RAHRIGQ K++ +YRLV + +VEE I++ AK
Sbjct: 878 GLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGTVEEEIIERAK 937
Query: 1212 KKLMLDQLFV------------NKSG-------SQKEVEDILRWGTEELFNDSPGINGKD 1252
KK++LD L + N SG +++E+ IL++G E+LF + I G++
Sbjct: 938 KKMVLDHLVIQRMDTTGRTVLENNSGRSNSNPFNKEELTAILKFGAEDLFKE---IEGEE 994
Query: 1253 MGENNTSIEEAVRDLEQKHRK 1273
I+E +R E + +
Sbjct: 995 SEPQEMDIDEILRLAETRENE 1015
Score = 102 (41.0 bits), Expect = 1.1e-125, Sum P(4) = 1.1e-125
Identities = 52/193 (26%), Positives = 84/193 (43%)
Query: 474 SSDEECMKNDIGVDRIQVYRRSVTKECKVTKECKGENAIDLLRE--DDKDSDPVAVNGKV 531
S++ E + + R + RR+V K +V K+ K + +E DD D D A +
Sbjct: 165 SAESEAEQKKVKARR-PIPRRTVPKP-QVKKQPKIQRGKRKKQESSDDDDDDDEAPKRQT 222
Query: 532 QDESAVSTEDLGERNDKMVVEDADVSLRDNEGLTVSEIHITCESTDKDVD--VGKK---- 585
+ +A +++ + D D+D L + G V E E+ +K +D +GKK
Sbjct: 223 RRRAA---KNVSYKEDDDFETDSD-DLIEMTGEGVDEQQDNSETIEKVLDSRLGKKGVDL 278
Query: 586 -----TSGSVAKRVQEPAVTESAQ--VKGKAVSYEFLVKWVGKSNIHNSWIPESQL---K 635
T S E S + + ++L+KW G S IH++W E L K
Sbjct: 279 NPFAATGASTTVYAVEANGDPSGDFDTEREEGEIQYLIKWKGWSYIHSTWESEESLQQQK 338
Query: 636 VLAKRKLENYKAK 648
V +KLEN+K K
Sbjct: 339 VKGLKKLENFKKK 351
Score = 58 (25.5 bits), Expect = 4.4e-121, Sum P(4) = 4.4e-121
Identities = 35/167 (20%), Positives = 70/167 (41%)
Query: 507 KGENAIDLLREDDKDSDPVAVNGKVQDESAVSTED-LGERNDKMVVEDADVSLRDNEGLT 565
KG + I E ++ V G + E+ ED + + K+ ED + E
Sbjct: 319 KGWSYIHSTWESEESLQQQKVKGLKKLENFKKKEDEIKQWLGKVSPEDVEYFNCQQE--L 376
Query: 566 VSEIHITCESTDKDVDVGKKTSGSVAKRVQEPAVTESAQVKGKAVSYEFLVKWVGKSNIH 625
SE++ + ++ + V KTS S + PA + + E+L KW+G
Sbjct: 377 ASELNKQYQIVERVIAV--KTSKSALGQTDFPAHSRKPAPSNEP---EYLCKWMGLPYSE 431
Query: 626 NSWIPESQLKVLAKRKLENYKAKYGTTVINICD-ERWKQPQRVISLR 671
SW E+ + + ++++ ++ + I + + KQ R ++L+
Sbjct: 432 CSWEDEALIGKKFQSCIDSFHSRNNSKTIPTRECKALKQRPRFVALK 478
Score = 55 (24.4 bits), Expect = 1.1e-125, Sum P(4) = 1.1e-125
Identities = 20/75 (26%), Positives = 37/75 (49%)
Query: 1297 ENAIARLLDRSNLQSGS---TD--LAEGDLENDML--GSVKATEWNEETTEDQAESPVAA 1349
EN RL D L+ S +D EG++++D L K + +E E++ E PV++
Sbjct: 1356 ENKAPRLKDEHGLELSSPRHSDNPSEEGEVKDDGLEKSPTKKKQKKKENKENK-EKPVSS 1414
Query: 1350 VDDASAENSERKEEN 1364
D + ++K ++
Sbjct: 1415 RKDREGDKEKKKSKD 1429
Score = 49 (22.3 bits), Expect = 1.1e-125, Sum P(4) = 1.1e-125
Identities = 26/115 (22%), Positives = 50/115 (43%)
Query: 193 DSSQVDVSCSTKPENTSAGVPVEGSSSCPNDDDEKQLNASPTDSLADTKFHPAEEVLPHS 252
+S+ S ++ E+ S GS S P + K+ AS + +AD K EE
Sbjct: 52 ESNSSSESSESQSESESESA---GSKSQPVLPEAKEKPASKKERIADVK-KMWEEYPDVY 107
Query: 253 QVTKSEQNDEVPVEKH--EKSSTNGSSGIKFVLAIGASERDRKRKPEVKDEDSQK 305
V +S ++ + P + E++S+ SG ++ K K + ++D ++
Sbjct: 108 GVRRSNRSRQEPSRFNIKEEASSGSESGSPKRRGQRQLKKQEKWKQDPSEDDQEQ 162
Score = 44 (20.5 bits), Expect = 3.6e-125, Sum P(4) = 3.6e-125
Identities = 25/91 (27%), Positives = 41/91 (45%)
Query: 225 DEKQLNASPTDSLADTKFHPAEEVLPHSQV---TKSEQNDEVPVEKH--EKSSTNGSSGI 279
D+ Q S S A + H A E S ++SEQ + P H E +S++ SS
Sbjct: 6 DKSQEEDSSLHSNASS--HSASEEASASDSGSQSESEQGSD-PGSGHGSESNSSSESSES 62
Query: 280 KFVL-AIGASERDRKRKPEVKDEDSQKKLRV 309
+ + A + + PE K++ + KK R+
Sbjct: 63 QSESESESAGSKSQPVLPEAKEKPASKKERI 93
Score = 41 (19.5 bits), Expect = 3.1e-116, Sum P(3) = 3.1e-116
Identities = 9/28 (32%), Positives = 16/28 (57%)
Query: 517 EDDKDSDPVAVNGKVQDESAVSTEDLGE 544
E ++ SDP + +G + S+ S+E E
Sbjct: 38 ESEQGSDPGSGHGSESNSSSESSESQSE 65
>UNIPROTKB|G3MXX3 [details] [associations]
symbol:CHD2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 GeneTree:ENSGT00560000076896
OMA:AHSWCKN EMBL:DAAA02051958 Ensembl:ENSBTAT00000065179
Uniprot:G3MXX3
Length = 1810
Score = 1102 (393.0 bits), Expect = 1.9e-125, Sum P(4) = 1.9e-125
Identities = 255/620 (41%), Positives = 367/620 (59%)
Query: 679 EAFVKWTGLPYDECTWEKLDEPAL-EKYSHLTDLFVQFERQTLKKDASEDELPRGKGDCQ 737
E KW GLPY EC+WE DE + +K+ D F + K E K Q
Sbjct: 394 EYLCKWMGLPYSECSWE--DEALIGKKFQSCID---SFHSRNNSKTIPTRECKALK---Q 445
Query: 738 QSEIVALTEQPEELKGG--ALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFI 795
+ VAL +QP L G L +QLE LNWL W KS +VILADEMGLGKT+ +F+
Sbjct: 446 RPRFVALKKQPAYLGGENLELRDYQLEGLNWLAHSWCKSNSVILADEMGLGKTIQTISFL 505
Query: 796 SSLYCEFKAKLPCLVLVPLSTMPNWLAEFALWAPNLNVVEYHGCAKARAIIRQYEWHASD 855
S L+ + + P L++VPLST+ +W EF +WAP +NVV Y G +R IR+YEW
Sbjct: 506 SYLFHQHQLYGPFLIVVPLSTLTSWQREFEIWAPEINVVVYIGDLMSRNTIREYEW---- 561
Query: 856 PDNLNKKTSSYKFNVLLTTYEMILADSSHLRGVPWEVLVVDEGHRXXXXXXXXXXXXXXX 915
++ +T KFN L+TTYE++L D + L + W L VDE HR
Sbjct: 562 ---IHSQTKRLKFNALITTYEILLKDKTVLGSINWAFLGVDEAHRLKNDDSLLYKTLIDF 618
Query: 916 XXQHRVLLTGTPLQNNIGEMYNLLNFLQPASFPSLSSFEEKFNDLTTTQKVEELKKLVAP 975
HR+L+TGTPLQN++ E+++LL+F+ P F FEE + L K++ P
Sbjct: 619 KSNHRLLITGTPLQNSLKELWSLLHFIMPEKFEFWEDFEEDHGK-GRENGYQSLHKVLEP 677
Query: 976 HMLRRLKKDAMQNIPPKTERMVPVELSSIQAEYYRAMLTKNYQILRNIGKGVAQQSMLNI 1035
+LRR+KKD +++P K E+++ VE+S++Q +YY+ +LT+NY+ L +G + LNI
Sbjct: 678 FLLRRVKKDVEKSLPAKVEQILRVEMSALQKQYYKWILTRNYKALAKGTRG-STSGFLNI 736
Query: 1036 VMQLRKVCNHPYLI-PGTEPD-SGSVEFLHEMRIKASAKLTLLHSMLKVLYKEGHRVLIF 1093
VM+L+K CNH +LI P E + E L + I++S KL LL +L L + G+RVLIF
Sbjct: 737 VMELKKCCNHCHLIKPPEENERENGQEVLLSL-IRSSGKLILLDKLLTRLRERGNRVLIF 795
Query: 1094 SQMTKLLDILEDYLNIEFGPKTYERVDGSVSVGDRQAAITRFNQDKSR-FVFLLSTRSCG 1152
SQM ++LDIL +YL I+ P ++R+DGS+ R+ A+ FN D S F FLLSTR+ G
Sbjct: 796 SQMVRMLDILAEYLTIKHYP--FQRLDGSIKGEIRKQALDHFNADGSEDFCFLLSTRAGG 853
Query: 1153 LGINLATADTVIIYDSDFNPHADIQAMNRAHRIGQSKRLLVYRLVVRASVEERILQLAKK 1212
LGINLA+ADTV+I+DSD+NP D+QA RAHRIGQ K++ +YRLV + +VEE I++ AKK
Sbjct: 854 LGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGTVEEEIIERAKK 913
Query: 1213 KLMLDQLFV------------NKSG-------SQKEVEDILRWGTEELFNDSPGINGKDM 1253
K++LD L + N SG +++E+ IL++G E+LF + + G++
Sbjct: 914 KMVLDHLVIQRMDTTGRTVLENNSGRSNSNPFNKEELTAILKFGAEDLFKE---LEGEES 970
Query: 1254 GENNTSIEEAVRDLEQKHRK 1273
I+E +R E + +
Sbjct: 971 EPQEMDIDEILRLAETRENE 990
Score = 115 (45.5 bits), Expect = 1.9e-125, Sum P(4) = 1.9e-125
Identities = 51/172 (29%), Positives = 79/172 (45%)
Query: 488 RIQVYRRSVTKECKVTKECKGENAIDLLRE--DDKDSDPVAVNGKVQDESAVSTEDLGER 545
R V RR+V K +V K+ K + ++ DD+D D A + + +A +++ +
Sbjct: 157 RRPVPRRTVPKP-RVKKQPKTQRGKRKKQDSSDDEDEDDEAPKRQTRRRAA---KNVSYK 212
Query: 546 NDKMVVEDADVSLRDNEGLTVSEIHITCESTDKDVD--VGKK--TSGSVAKRVQEPAVTE 601
D D+D L + G V E E+ +K +D +GKK T S E
Sbjct: 213 EDDDFETDSD-DLIEMTGEGVDEQQDNSETIEKVLDSRLGKKGATGASTTVYAVEANGDP 271
Query: 602 SAQVKGKAVSYE--FLVKWVGKSNIHNSWIPESQL---KVLAKRKLENYKAK 648
S+ + E +L+KW G S IH++W E L KV +KLEN+K K
Sbjct: 272 SSDFDPEKDEGEVQYLIKWKGWSYIHSTWESEESLQQQKVKGLKKLENFKKK 323
Score = 61 (26.5 bits), Expect = 9.0e-120, Sum P(4) = 9.0e-120
Identities = 34/167 (20%), Positives = 70/167 (41%)
Query: 507 KGENAIDLLREDDKDSDPVAVNGKVQDESAVSTED-LGERNDKMVVEDADVSLRDNEGLT 565
KG + I E ++ V G + E+ ED + + K+ ED + E
Sbjct: 291 KGWSYIHSTWESEESLQQQKVKGLKKLENFKKKEDEIKQWLGKVSPEDVEYFNCQQE--L 348
Query: 566 VSEIHITCESTDKDVDVGKKTSGSVAKRVQEPAVTESAQVKGKAVSYEFLVKWVGKSNIH 625
SE++ + ++ + V KTS S + P ++ + E+L KW+G
Sbjct: 349 ASELNKQYQIVERVIAV--KTSKSTLGQTDFPGEIAHSRKPAPSNEPEYLCKWMGLPYSE 406
Query: 626 NSWIPESQLKVLAKRKLENYKAKYGTTVINICD-ERWKQPQRVISLR 671
SW E+ + + ++++ ++ + I + + KQ R ++L+
Sbjct: 407 CSWEDEALIGKKFQSCIDSFHSRNNSKTIPTRECKALKQRPRFVALK 453
Score = 60 (26.2 bits), Expect = 1.9e-125, Sum P(4) = 1.9e-125
Identities = 28/115 (24%), Positives = 52/115 (45%)
Query: 193 DSSQVDVSCSTKPENTSAGVPVEGSSSCPNDDDEKQLNASPTDSLADTKFHPAEEVLPHS 252
+S+ S ++ E+ S GS S P + K+ AS + +AD K EE
Sbjct: 32 ESNSSSESSESQSESESESA---GSKSQPVLPEAKEKPASKKERIADVK-KMWEEYPDVY 87
Query: 253 QVTKSEQNDEVPVEKH--EKSSTNGSSGIKFVLAIGASERDRKRKPEVKDEDSQK 305
V +S ++ + P + E++S+ SG ++ KRK E+ D++ ++
Sbjct: 88 GVRRSNRSRQEPSRFNIKEEASSGSESGSPKRRGQRQLKKQEKRKWELSDDEQEQ 142
Score = 46 (21.3 bits), Expect = 2.6e-118, Sum P(4) = 2.6e-118
Identities = 60/286 (20%), Positives = 107/286 (37%)
Query: 255 TKSEQNDEVPVEKH--EKSSTNGSSGIKFVL-AIGASERDRKRKPEVKDEDSQKKLRVDX 311
++SEQ + P H E +S++ SS + + A + + PE K++ + KK R+
Sbjct: 17 SESEQGSD-PGSGHGSESNSSSESSESQSESESESAGSKSQPVLPEAKEKPASKKERI-- 73
Query: 312 XXXXXXXXXXXXXXIGTLSPGTSKLHEKQRTNNDEVSASLCEVDV----GTKGLDAQRKD 367
G S+ E R N E ++S E G + L Q K
Sbjct: 74 -ADVKKMWEEYPDVYGVRRSNRSR-QEPSRFNIKEEASSGSESGSPKRRGQRQLKKQEKR 131
Query: 368 ELAEETTDPLDKSDKAGVHVNEIPLCKDIVPFELQQVDRVLGCRVKGDDTSSSCHISATA 427
+ E + D ++ A + + VP RV K T +
Sbjct: 132 KW-ELSDDEQEQGSSAESEPEQTVKARRPVPRRTVPKPRVK----KQPKTQRGKRKKQDS 186
Query: 428 TDDRHSDDFLVSENHNKILEENLACDTDLDAEV-TENLAELSPNVIRSSDEECMKNDIGV 486
+DD DD + +N++ D D E +++L E++ + DE+ N +
Sbjct: 187 SDDEDEDDEAPKRQTRRRAAKNVSYKEDDDFETDSDDLIEMTGEGV---DEQ-QDNSETI 242
Query: 487 DRIQVYRRSVTKECKVTKECKGENAIDLLREDDKDSDPVAVNGKVQ 532
+++ R + K+ T A++ + D DP G+VQ
Sbjct: 243 EKVLDSR--LGKK-GATGASTTVYAVEANGDPSSDFDPEKDEGEVQ 285
Score = 41 (19.5 bits), Expect = 2.0e-113, Sum P(3) = 2.0e-113
Identities = 9/28 (32%), Positives = 16/28 (57%)
Query: 517 EDDKDSDPVAVNGKVQDESAVSTEDLGE 544
E ++ SDP + +G + S+ S+E E
Sbjct: 18 ESEQGSDPGSGHGSESNSSSESSESQSE 45
Score = 38 (18.4 bits), Expect = 1.9e-125, Sum P(4) = 1.9e-125
Identities = 18/74 (24%), Positives = 29/74 (39%)
Query: 1296 DENAIARLLDR-SNLQSGSTDLAEGDLENDMLGSVKATEWNEETTEDQAESPVAAVDDAS 1354
DE+ I R S+ S ++ + LE + + N+E E Q S D
Sbjct: 1339 DEHGIEFSSPRHSDNPSEEGEVKDDGLEKSPTKKKQKKKENKENKEKQMSSRKDKEGDKE 1398
Query: 1355 AENSERKEENAVTG 1368
+ S+ K+E G
Sbjct: 1399 RKRSKDKKEKPKGG 1412
>UNIPROTKB|J9NX79 [details] [associations]
symbol:CHD2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 GeneTree:ENSGT00560000076896
EMBL:AAEX03002279 EMBL:AAEX03002280 Ensembl:ENSCAFT00000044612
Uniprot:J9NX79
Length = 1689
Score = 1107 (394.7 bits), Expect = 2.2e-125, Sum P(4) = 2.2e-125
Identities = 256/620 (41%), Positives = 367/620 (59%)
Query: 679 EAFVKWTGLPYDECTWEKLDEPAL-EKYSHLTDLFVQFERQTLKKDASEDELPRGKGDCQ 737
E KW GLPY EC+WE DE + +K+ D F + K E K Q
Sbjct: 381 EYLCKWMGLPYSECSWE--DEALIGKKFQSCID---SFHSRNNSKTIPTRECKALK---Q 432
Query: 738 QSEIVALTEQPEELKGG--ALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFI 795
+ VAL +QP L G L +QLE LNWL W KS +VILADEMGLGKT+ +F+
Sbjct: 433 RPRFVALKKQPTYLGGENLELRDYQLEGLNWLAHSWCKSNSVILADEMGLGKTIQTISFL 492
Query: 796 SSLYCEFKAKLPCLVLVPLSTMPNWLAEFALWAPNLNVVEYHGCAKARAIIRQYEWHASD 855
S L+ + + P L++VPLST+ +W EF +WAP +NVV Y G +R IR+YEW
Sbjct: 493 SYLFHQHQLYGPFLIVVPLSTLTSWQREFEIWAPEINVVVYIGDLMSRNTIREYEW---- 548
Query: 856 PDNLNKKTSSYKFNVLLTTYEMILADSSHLRGVPWEVLVVDEGHRXXXXXXXXXXXXXXX 915
++ +T KFN L+TTYE++L D + L + W L VDE HR
Sbjct: 549 ---IHSQTKRLKFNALITTYEILLKDKTVLGSINWAFLGVDEAHRLKNDDSLLYKTLIDF 605
Query: 916 XXQHRVLLTGTPLQNNIGEMYNLLNFLQPASFPSLSSFEEKFNDLTTTQKVEELKKLVAP 975
HR+L+TGTPLQN++ E+++LL+F+ P F FEE + L K++ P
Sbjct: 606 KSHHRLLITGTPLQNSLKELWSLLHFIMPEKFEFWEDFEEDHGK-GRENGYQSLHKVLEP 664
Query: 976 HMLRRLKKDAMQNIPPKTERMVPVELSSIQAEYYRAMLTKNYQILRNIGKGVAQQSMLNI 1035
+LRR+KKD +++P K E+++ VE+S++Q +YY+ +LT+NY+ L +G + LNI
Sbjct: 665 FLLRRVKKDVEKSLPAKVEQILRVEMSALQKQYYKWILTRNYKALAKGTRG-STSGFLNI 723
Query: 1036 VMQLRKVCNHPYLI-PGTEPD-SGSVEFLHEMRIKASAKLTLLHSMLKVLYKEGHRVLIF 1093
VM+L+K CNH YLI P E + E L + I++S KL LL +L L + G+RVLIF
Sbjct: 724 VMELKKCCNHCYLIKPPEENERENGQEVLLSL-IRSSGKLILLDKLLTRLRERGNRVLIF 782
Query: 1094 SQMTKLLDILEDYLNIEFGPKTYERVDGSVSVGDRQAAITRFNQDKSR-FVFLLSTRSCG 1152
SQM ++LDIL +YL I+ P ++R+DGS+ R+ A+ FN D S F FLLSTR+ G
Sbjct: 783 SQMVRMLDILAEYLTIKHYP--FQRLDGSIKGEIRKQALDHFNADGSEDFCFLLSTRAGG 840
Query: 1153 LGINLATADTVIIYDSDFNPHADIQAMNRAHRIGQSKRLLVYRLVVRASVEERILQLAKK 1212
LGINLA+ADTV+I+DSD+NP D+QA RAHRIGQ K++ +YRLV + +VEE I++ AKK
Sbjct: 841 LGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGTVEEEIIERAKK 900
Query: 1213 KLMLDQLFV------------NKSG-------SQKEVEDILRWGTEELFNDSPGINGKDM 1253
K++LD L + N SG +++E+ IL++G E+LF + + G++
Sbjct: 901 KMVLDHLVIQRMDTTGRTVLENNSGRSNSNPFNKEELTAILKFGAEDLFKE---LEGEES 957
Query: 1254 GENNTSIEEAVRDLEQKHRK 1273
I+E +R E + +
Sbjct: 958 EPQEMDIDEILRLAETRENE 977
Score = 113 (44.8 bits), Expect = 2.2e-125, Sum P(4) = 2.2e-125
Identities = 50/186 (26%), Positives = 82/186 (44%)
Query: 474 SSDEECMKNDIGVDRIQVYRRSVTKECKVTKECKGENAIDLLREDDKDSDPVAVNGKVQD 533
S++ E + + R V RR+V K +V K+ K + R+D D D +
Sbjct: 149 SAESEAEQKKVKARR-PVPRRTVPKP-RVKKQPKTQRG-KRKRQDSSDDDDEDDEAPKRQ 205
Query: 534 ESAVSTEDLGERNDKMVVEDADVSLRDNEGLTVSEIHITCESTDKDVD--VGKKTSGSVA 591
+ +++ + D D+D L + G E E+ +K +D +GKK + +
Sbjct: 206 TRRRAAKNVSYKEDDDFETDSD-DLIEMTGEGADEQQDNSETIEKVLDSRLGKKGATGAS 264
Query: 592 KRVQEPAVTESAQVKG-----KAVS-YEFLVKWVGKSNIHNSWIPESQL---KVLAKRKL 642
V A+ + G K S ++L+KW G S IH++W E L KV +KL
Sbjct: 265 TTVY--AIEANGDPSGDFDTEKDESEVQYLIKWKGWSYIHSTWESEESLQQQKVKGLKKL 322
Query: 643 ENYKAK 648
EN+K K
Sbjct: 323 ENFKKK 328
Score = 44 (20.5 bits), Expect = 2.2e-125, Sum P(4) = 2.2e-125
Identities = 31/119 (26%), Positives = 52/119 (43%)
Query: 193 DSSQVDVSCSTKPENTSAGVPVEGSSSCPNDDDEKQLNASPTDSLADTKFHPAE--EVLP 250
+S+ S ++ E+ S GS S P + K+ AS + +AD K + E P
Sbjct: 32 ESNSSSESSESQSESESESA---GSKSQPVLPEAKEKPASKKERIADVKKIRKKMWEEYP 88
Query: 251 HSQ-VTKSEQNDEVPVE---KHEKSSTNGSSGIKFVLAIGASERDR-KRKPEVKDEDSQ 304
V +S ++ + P K E SS + S K ++++ KR+P +DE Q
Sbjct: 89 DVYGVRRSNRSRQEPSRFNIKEEASSGSESGSPKRRGQRQLKKQEKWKREPS-EDEQEQ 146
Score = 42 (19.8 bits), Expect = 2.2e-125, Sum P(4) = 2.2e-125
Identities = 24/108 (22%), Positives = 42/108 (38%)
Query: 1265 RDLEQKHRKRGGGLGDVYQDKCT---EGSTKIVWDENAIARLLDR-SNLQSGSTDLAEGD 1320
+ LE+K GG + + K E + DE+ + R S+ S ++ +
Sbjct: 1293 KSLEKKGAVTGGEEAKLKKRKPRVKKENKEPRLKDEHGVEFSSPRHSDNPSEEGEVKDDG 1352
Query: 1321 LENDMLGSVKATEWNEETTEDQAESPVAAVDDASAENSERKEENAVTG 1368
LE + + + N+E E Q S D + S+ K+E G
Sbjct: 1353 LEKSPMKKKQKKKENKENKEKQMSSRKDKEGDKERKKSKDKKEKKPKG 1400
Score = 41 (19.5 bits), Expect = 4.8e-115, Sum P(3) = 4.8e-115
Identities = 9/28 (32%), Positives = 16/28 (57%)
Query: 517 EDDKDSDPVAVNGKVQDESAVSTEDLGE 544
E ++ SDP + +G + S+ S+E E
Sbjct: 18 ESEQGSDPGSGHGSESNSSSESSESQSE 45
Score = 37 (18.1 bits), Expect = 1.2e-124, Sum P(4) = 1.2e-124
Identities = 13/45 (28%), Positives = 19/45 (42%)
Query: 29 PGLSNGKEENLVTSESPRNTPSAKRRLKNEINADRSSTKKKGNDG 73
P N KEE SES +R+LK + R ++ + G
Sbjct: 103 PSRFNIKEEASSGSESGSPKRRGQRQLKKQEKWKREPSEDEQEQG 147
>UNIPROTKB|E1BPM4 [details] [associations]
symbol:CHD7 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0060324 "face development" evidence=IEA] [GO:0060123
"regulation of growth hormone secretion" evidence=IEA] [GO:0060041
"retina development in camera-type eye" evidence=IEA] [GO:0060021
"palate development" evidence=IEA] [GO:0050890 "cognition"
evidence=IEA] [GO:0048844 "artery morphogenesis" evidence=IEA]
[GO:0048752 "semicircular canal morphogenesis" evidence=IEA]
[GO:0043584 "nose development" evidence=IEA] [GO:0040018 "positive
regulation of multicellular organism growth" evidence=IEA]
[GO:0035116 "embryonic hindlimb morphogenesis" evidence=IEA]
[GO:0030540 "female genitalia development" evidence=IEA]
[GO:0030217 "T cell differentiation" evidence=IEA] [GO:0021545
"cranial nerve development" evidence=IEA] [GO:0008015 "blood
circulation" evidence=IEA] [GO:0007628 "adult walking behavior"
evidence=IEA] [GO:0007605 "sensory perception of sound"
evidence=IEA] [GO:0007512 "adult heart development" evidence=IEA]
[GO:0007417 "central nervous system development" evidence=IEA]
[GO:0003007 "heart morphogenesis" evidence=IEA] [GO:0001701 "in
utero embryonic development" evidence=IEA] [GO:0001501 "skeletal
system development" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271
Pfam:PF07533 PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298
SMART:SM00490 SMART:SM00592 SMART:SM00717 Pfam:PF00385
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0008015
GO:GO:0003007 GO:GO:0050890 GO:GO:0001701 GO:GO:0040018
GO:GO:0007417 GO:GO:0003682 GO:GO:0001501 GO:GO:0060041
GO:GO:0007605 GO:GO:0007512 GO:GO:0004386 GO:GO:0035116
GO:GO:0060324 GO:GO:0060021 GO:GO:0048844 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0030540 GO:GO:0007628 GO:GO:0030217 GO:GO:0048752
InterPro:IPR023780 OMA:TFGVIFD GO:GO:0021545 GO:GO:0043584
GO:GO:0060123 GeneTree:ENSGT00560000077077 EMBL:DAAA02038386
EMBL:DAAA02038387 EMBL:DAAA02038388 IPI:IPI00697020
Ensembl:ENSBTAT00000026607 Uniprot:E1BPM4
Length = 2940
Score = 1183 (421.5 bits), Expect = 4.6e-125, Sum P(5) = 4.6e-125
Identities = 298/780 (38%), Positives = 423/780 (54%)
Query: 517 EDDKDSDPVAVNGKVQDESAVSTEDLGERNDKMVVEDADVSLRDNEGLTVSEIHITCEST 576
EDD+D Q + TEDL + +DAD + RD+ T S+ ES
Sbjct: 688 EDDEDPGVQKRRSSRQVKRKRYTEDLEFKISDEEADDADAAGRDSPS-TTSQSEPQ-ESV 745
Query: 577 DKDVDVGKKTSGSVAKRVQEPAVTESAQVKGKAVSYEFLVKWVGKSNIHNSW--IPESQL 634
D D V +K S + + Q+ + E +V+ EF VK+ S +H W I + +
Sbjct: 746 DADGPVVEKIMSSRSVKKQKES-GEEVEVE------EFYVKYKNFSYLHCQWASIEDLEK 798
Query: 635 KVLAKRKLENYKAKYGTT--VINICDERWK----QPQRVISLRSSKDGTREA----FVKW 684
++K++ +KAK G + I DE + + R++ S D E VKW
Sbjct: 799 DKRIQQKIKRFKAKQGQNKFLSEIEDELFNPDYVEVDRIMDFARSTDDRGEPVTHYLVKW 858
Query: 685 TGLPYDECTWEKLDEPALEKYSHLTDLFVQFERQTLKKDASEDELPRGKGDCQQSEIVAL 744
LPY++ TWE + K +FE+ + ++ + + R D +
Sbjct: 859 CSLPYEDSTWELRQDIDQAKIE-------EFEK-LMSREPETERVERPPADDWKK----- 905
Query: 745 TEQPEELKGG-ALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFK 803
+E E K L +QLE +NWL W+ +N ILADEMGLGKT+ + F+ +Y +
Sbjct: 906 SESSREYKNNNKLREYQLEGVNWLLFNWYNMRNCILADEMGLGKTIQSITFLYEIYLK-G 964
Query: 804 AKLPCLVLVPLSTMPNWLAEFALWAPNLNVVEYHGCAKARAIIRQYEWHASDPDNLNKKT 863
P LV+ PLST+PNW EF W LNVV YHG +R I+ YE + DP K
Sbjct: 965 IHGPFLVIAPLSTIPNWEREFRTWT-ELNVVVYHGSQASRRTIQLYEMYFKDPQGRVIK- 1022
Query: 864 SSYKFNVLLTTYEMILADSSHLRGVPWEVLVVDEGHRXXXXXXXXXXXXXXXXXQHRVLL 923
SYKF+ ++TT+EMIL D LR +PW +V+DE HR +H+VLL
Sbjct: 1023 GSYKFHAIITTFEMILTDCPELRNIPWRCVVIDEAHRLKNRNCKLLEGLKMMDLEHKVLL 1082
Query: 924 TGTPLQNNIGEMYNLLNFLQPASFPSLSSFEEKFNDLTTTQKVEELKKLVAPHMLRRLKK 983
TGTPLQN + E+++LL+FL+P FPS ++F ++F DL T ++V++L+ ++ P MLRRLK+
Sbjct: 1083 TGTPLQNTVEELFSLLHFLEPTRFPSETTFMQEFGDLKTEEQVQKLQAILKPMMLRRLKE 1142
Query: 984 DAMQNIPPKTERMVPVELSSIQAEYYRAMLTKNYQILRNIGKGVAQQSMLNIVMQLRKVC 1043
D +N+ PK E ++ VEL++IQ +YYRA+L KN+ L G ++LN +M+LRK C
Sbjct: 1143 DVEKNLAPKEETIIEVELTNIQKKYYRAILEKNFAFLSKGGGQANVPNLLNTMMELRKCC 1202
Query: 1044 NHPYLIPGTEP----------DSGSVEFLHEMRIKASAKLTLLHSMLKVLYKEGHRVLIF 1093
NHPYLI G E ++ S +F + I+A+ KL L+ +L L GHRVLIF
Sbjct: 1203 NHPYLINGAEEKILEEFKETHNADSPDFQLQAMIQAAGKLVLIDKLLPKLKAGGHRVLIF 1262
Query: 1094 SQMTKLLDILEDYLNIEFGPKTYERVDGSVSVGDRQAAITRFNQ-DKSRFVFLLSTRSCG 1152
SQM + LDILEDYL P YER+DG V RQAAI RF++ D RFVFLL TR+ G
Sbjct: 1263 SQMVRCLDILEDYLIQRRYP--YERIDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGG 1320
Query: 1153 LGINLATADTVIIYDSDFNPHADIQAMNRAHRIGQSKRLLVYRLVVRASVEERILQLAKK 1212
LGINL ADT II+DSD+NP D+QA R HRIGQSK + +YRL+ R S E + A
Sbjct: 1321 LGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKSVKIYRLITRNSYEREMFDKASL 1380
Query: 1213 KLMLDQLFVNK-SGSQKEVEDILRWGTEELFND--SPGINGKDMGENNTSIEEAVRDLEQ 1269
KL LD+ + SG + + + +E+ D G G M E + + D++Q
Sbjct: 1381 KLGLDKAVLQSMSGRENAPNGVQQLSKKEI-EDLLRKGAYGALMDEEDEGSKFCEEDIDQ 1439
Score = 65 (27.9 bits), Expect = 2.5e-124, Sum P(4) = 2.5e-124
Identities = 17/53 (32%), Positives = 25/53 (47%)
Query: 21 KRRKLPCGPGLSNGKEENLVTSESPRNTPSAKRRLKNEINADRSSTKKKGNDG 73
K K P P + +E V + +P+ S K K +A+ S+ KKK N G
Sbjct: 615 KEPKTPKAPKIPKEPKEKKVKTATPKPKSSKKSSNKKRPDAEASALKKKVNKG 667
Score = 57 (25.1 bits), Expect = 4.6e-125, Sum P(5) = 4.6e-125
Identities = 29/132 (21%), Positives = 53/132 (40%)
Query: 255 TKSEQNDEVP--VEKHE--KSSTNGSSGIKFVLAIGASERDRKRKPEVKDEDSQKKLRVD 310
+K+ D+ P V+ E ++S +GS K +++D K E K++ K+ +
Sbjct: 561 SKNFGKDDFPGGVDNQELNRNSLDGSQEEKKKKKRPKAKKDPKEPKEPKEKKEPKEPKTP 620
Query: 311 XXXXXXXXXXXXXXXIGTLSPGTSKLHEKQRTNNDEVSASLCEVDVG-TKGLDAQRKDEL 369
T P +SK ++ + E SA +V+ G T+G + D+
Sbjct: 621 KAPKIPKEPKEKKVKTATPKPKSSKKSSNKKRPDAEASALKKKVNKGKTEGSENSDLDKT 680
Query: 370 AEETTDPLDKSD 381
+ P D D
Sbjct: 681 PPPSPPPEDDED 692
Score = 41 (19.5 bits), Expect = 4.6e-125, Sum P(5) = 4.6e-125
Identities = 12/42 (28%), Positives = 20/42 (47%)
Query: 1327 GSVKATEWNEETTEDQAESPVAAVDDASAENSERKEENAVTG 1368
G+ +A E E ED+++ P + + A +S A TG
Sbjct: 2782 GASRAEEKGGEH-EDESKDPEKSTEAAPGPDSANGSVGAATG 2822
Score = 41 (19.5 bits), Expect = 6.3e-123, Sum P(3) = 6.3e-123
Identities = 25/101 (24%), Positives = 42/101 (41%)
Query: 1245 SPGINGKDMGENNTSIEEAVRDLEQKHRKRGGGLG-DVYQDKCTE-GSTKIVWDENAIAR 1302
+PG K G EA E K + G G D QD+ E G+ K + +
Sbjct: 2110 APGQEDK-AGAAEAKAREASEKPEGKEEEEAEGSGKDQRQDREAELGAGKS--EPRGVEV 2166
Query: 1303 LLDRSNLQSGSTDLAEGDLENDMLGSVKATEWNEETTEDQA 1343
+D SG ++E E D ++ + +EE+++ +A
Sbjct: 2167 GVD-----SGPKSISEKGSEEDEEEKLEDDDKSEESSQPEA 2202
Score = 40 (19.1 bits), Expect = 3.2e-124, Sum P(4) = 3.2e-124
Identities = 12/29 (41%), Positives = 15/29 (51%)
Query: 1340 EDQAESPVAAVDDASAENSERKEENAVTG 1368
ED+A + A +AS E E KEE G
Sbjct: 2114 EDKAGAAEAKAREAS-EKPEGKEEEEAEG 2141
Score = 39 (18.8 bits), Expect = 4.6e-125, Sum P(5) = 4.6e-125
Identities = 10/39 (25%), Positives = 21/39 (53%)
Query: 1288 EGSTKIVWDENAIARLLDRSNLQSGSTDLAEGDLENDML 1326
+ S K+ D+ + + R N +G L++ ++E D+L
Sbjct: 1377 KASLKLGLDKAVLQSMSGRENAPNGVQQLSKKEIE-DLL 1414
Score = 38 (18.4 bits), Expect = 4.6e-125, Sum P(5) = 4.6e-125
Identities = 7/20 (35%), Positives = 11/20 (55%)
Query: 98 HLQCLDPPLKRIPNGKWQCP 117
H Q PP+ ++P+G P
Sbjct: 102 HSQYHTPPVPQVPHGGGGAP 121
>UNIPROTKB|F1SA77 [details] [associations]
symbol:CHD2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 GeneTree:ENSGT00560000076896
OMA:AHSWCKN EMBL:CT954235 EMBL:CU466964 Ensembl:ENSSSCT00000002524
Uniprot:F1SA77
Length = 1831
Score = 1108 (395.1 bits), Expect = 4.7e-125, Sum P(4) = 4.7e-125
Identities = 256/620 (41%), Positives = 367/620 (59%)
Query: 679 EAFVKWTGLPYDECTWEKLDEPAL-EKYSHLTDLFVQFERQTLKKDASEDELPRGKGDCQ 737
E KW GLPY EC+WE DE + +K+ D F + K E K Q
Sbjct: 414 EYLCKWMGLPYSECSWE--DEALIGKKFQSCID---SFHSRNNSKTIPTRECKALK---Q 465
Query: 738 QSEIVALTEQPEELKGG--ALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFI 795
+ VAL +QP L G L +QLE LNWL W KS +VILADEMGLGKT+ +F+
Sbjct: 466 RPRFVALKKQPAYLGGENLELRDYQLEGLNWLAHSWCKSNSVILADEMGLGKTIQTISFL 525
Query: 796 SSLYCEFKAKLPCLVLVPLSTMPNWLAEFALWAPNLNVVEYHGCAKARAIIRQYEWHASD 855
S L+ + + P L++VPLST+ +W EF +WAP +NVV Y G +R IR+YEW
Sbjct: 526 SYLFHQHQLYGPFLIVVPLSTLTSWQREFEIWAPEINVVVYIGDLMSRNTIREYEW---- 581
Query: 856 PDNLNKKTSSYKFNVLLTTYEMILADSSHLRGVPWEVLVVDEGHRXXXXXXXXXXXXXXX 915
++ +T KFN L+TTYE++L D + L + W L VDE HR
Sbjct: 582 ---IHSQTKRLKFNALITTYEILLKDKTVLGSINWAFLGVDEAHRLKNDDSLLYKTLIDF 638
Query: 916 XXQHRVLLTGTPLQNNIGEMYNLLNFLQPASFPSLSSFEEKFNDLTTTQKVEELKKLVAP 975
HR+L+TGTPLQN++ E+++LL+F+ P F FEE + L K++ P
Sbjct: 639 KSNHRLLITGTPLQNSLKELWSLLHFIMPEKFEFWEDFEEDHGK-GRENGYQSLHKVLEP 697
Query: 976 HMLRRLKKDAMQNIPPKTERMVPVELSSIQAEYYRAMLTKNYQILRNIGKGVAQQSMLNI 1035
+LRR+KKD +++P K E+++ VE+S++Q +YY+ +LT+NY+ L +G + LNI
Sbjct: 698 FLLRRVKKDVEKSLPAKVEQILRVEMSALQKQYYKWILTRNYKALAKGTRG-STSGFLNI 756
Query: 1036 VMQLRKVCNHPYLI-PGTEPD-SGSVEFLHEMRIKASAKLTLLHSMLKVLYKEGHRVLIF 1093
VM+L+K CNH YLI P E + E L + I++S KL LL +L L + G+RVLIF
Sbjct: 757 VMELKKCCNHCYLIKPPEENERENGQEILLSL-IRSSGKLILLDKLLTRLRERGNRVLIF 815
Query: 1094 SQMTKLLDILEDYLNIEFGPKTYERVDGSVSVGDRQAAITRFNQDKSR-FVFLLSTRSCG 1152
SQM ++LDIL +YL I+ P ++R+DGS+ R+ A+ FN D S F FLLSTR+ G
Sbjct: 816 SQMVRMLDILAEYLTIKHYP--FQRLDGSIKGEIRKQALDHFNADGSEDFCFLLSTRAGG 873
Query: 1153 LGINLATADTVIIYDSDFNPHADIQAMNRAHRIGQSKRLLVYRLVVRASVEERILQLAKK 1212
LGINLA+ADTV+I+DSD+NP D+QA RAHRIGQ K++ +YRLV + +VEE I++ AKK
Sbjct: 874 LGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGTVEEEIIERAKK 933
Query: 1213 KLMLDQLFV------------NKSG-------SQKEVEDILRWGTEELFNDSPGINGKDM 1253
K++LD L + N SG +++E+ IL++G E+LF + + G++
Sbjct: 934 KMVLDHLVIQRMDTTGRTVLENNSGRSNSNPFNKEELTAILKFGAEDLFKE---LEGEES 990
Query: 1254 GENNTSIEEAVRDLEQKHRK 1273
I+E +R E + +
Sbjct: 991 EPQEMDIDEILRLAETRENE 1010
Score = 113 (44.8 bits), Expect = 4.7e-125, Sum P(4) = 4.7e-125
Identities = 50/174 (28%), Positives = 80/174 (45%)
Query: 488 RIQVYRRSVTKECKVTKECKGENAIDLLRE--DDKDSDPVAVNGKVQDESAVSTEDLGER 545
R V RR+V K +V K+ K + ++ DD D D A + + +A +++ +
Sbjct: 177 RRPVPRRTVPKP-RVKKQPKTQRGKRKKQDSSDDDDEDDEAPKRQTRRRAA---KNVSYK 232
Query: 546 NDKMVVEDADVSLRDNEGLTVSEIHITCESTDKDVD--VGKKTSGSVAKRVQEPAVTESA 603
D D+D L + G V E E+ +K +D +GKK + + V A+ +
Sbjct: 233 EDDDFETDSD-DLIEMTGEGVDEQQDNSETIEKVLDSRLGKKGATGASTTVY--AIEANG 289
Query: 604 QVKGKAVS------YEFLVKWVGKSNIHNSWIPESQL---KVLAKRKLENYKAK 648
G S ++L+KW G S IH++W E L KV +KLEN+K K
Sbjct: 290 DPSGDFDSEKDEGEVQYLIKWKGWSYIHSTWESEESLQQQKVKGLKKLENFKKK 343
Score = 61 (26.5 bits), Expect = 1.3e-119, Sum P(4) = 1.3e-119
Identities = 34/167 (20%), Positives = 70/167 (41%)
Query: 507 KGENAIDLLREDDKDSDPVAVNGKVQDESAVSTED-LGERNDKMVVEDADVSLRDNEGLT 565
KG + I E ++ V G + E+ ED + + K+ ED + E
Sbjct: 311 KGWSYIHSTWESEESLQQQKVKGLKKLENFKKKEDEIKQWLGKVSPEDVEYFNCQQE--L 368
Query: 566 VSEIHITCESTDKDVDVGKKTSGSVAKRVQEPAVTESAQVKGKAVSYEFLVKWVGKSNIH 625
SE++ + ++ + V KTS S + P ++ + E+L KW+G
Sbjct: 369 ASELNKQYQIVERVIAV--KTSKSTLGQTDFPGEIAHSRKPAPSNEPEYLCKWMGLPYSE 426
Query: 626 NSWIPESQLKVLAKRKLENYKAKYGTTVINICD-ERWKQPQRVISLR 671
SW E+ + + ++++ ++ + I + + KQ R ++L+
Sbjct: 427 CSWEDEALIGKKFQSCIDSFHSRNNSKTIPTRECKALKQRPRFVALK 473
Score = 50 (22.7 bits), Expect = 4.7e-125, Sum P(4) = 4.7e-125
Identities = 31/116 (26%), Positives = 51/116 (43%)
Query: 193 DSSQVDVSCSTKPENTSAGVPVEGSSSCPNDDDEKQLNASPTDSLADTKFHPAEEVLPHS 252
+S+ S ++ E+ S GS S P + K+ AS + +AD K EE
Sbjct: 51 ESNSSSESSESQSESESESA---GSKSQPVLPEAKEKPASKKERIADVK-KMWEEYPDVY 106
Query: 253 QVTKSEQNDEVPVE---KHEKSSTNGSSGIKFVLAIGASERDR-KRKPEVKDEDSQ 304
V +S ++ + P K E SS + S K ++++ KR+P +DE Q
Sbjct: 107 GVRRSNRSRQEPSRFNIKEEASSGSESGSPKRRGQRQLKKQEKWKREPS-EDEQEQ 161
Score = 47 (21.6 bits), Expect = 2.8e-119, Sum P(4) = 2.8e-119
Identities = 56/253 (22%), Positives = 94/253 (37%)
Query: 225 DEKQLNASPTDSLADTKFHPAEEVLPHSQV---TKSEQNDEVPVEKH--EKSSTNGSSGI 279
D+ Q S S A + H A E S ++SEQ + P H E +S++ SS
Sbjct: 5 DKSQEEDSSLHSNASS--HSASEEASGSDSGSQSESEQGSD-PGSGHGSESNSSSESSES 61
Query: 280 KFVL-AIGASERDRKRKPEVKDEDSQKKLRVDXXXXXXXXXXXXXXXIGTLSPGTSKLHE 338
+ + A + + PE K++ + KK R+ G S+ E
Sbjct: 62 QSESESESAGSKSQPVLPEAKEKPASKKERI---ADVKKMWEEYPDVYGVRRSNRSR-QE 117
Query: 339 KQRTNNDEVSASLCEVDVGTKGLDAQRKDELAEE-TTDPLDKSDKAGVHVNEIPLCKDIV 397
R N E ++S E G+ QR+ + E+ +P + + G P K +
Sbjct: 118 PSRFNIKEEASSGSES--GSPKRRGQRQLKKQEKWKREPSEDEQEQGTSAESEPEQKKVK 175
Query: 398 PFELQQVDRVLGCRVKGDD-TSSSCHISATATDDRHSDDFLVSENHNKILEENLACDTDL 456
V RVK T ++DD DD + +N++ D
Sbjct: 176 ARRPVPRRTVPKPRVKKQPKTQRGKRKKQDSSDDDDEDDEAPKRQTRRRAAKNVSYKEDD 235
Query: 457 DAEV-TENLAELS 468
D E +++L E++
Sbjct: 236 DFETDSDDLIEMT 248
Score = 41 (19.5 bits), Expect = 4.7e-125, Sum P(4) = 4.7e-125
Identities = 18/74 (24%), Positives = 30/74 (40%)
Query: 1296 DENAIARLLDR-SNLQSGSTDLAEGDLENDMLGSVKATEWNEETTEDQAESPVAAVDDAS 1354
DE+ I R S+ S ++ + LE + + + N+E E Q S D
Sbjct: 1360 DEHGIEFSSPRHSDNPSEEGEVKDDGLEKSPMKKKQKKKENKENKEKQMSSRKDKEGDKE 1419
Query: 1355 AENSERKEENAVTG 1368
+ S+ K+E G
Sbjct: 1420 RKKSKDKKEKPKGG 1433
Score = 41 (19.5 bits), Expect = 2.5e-114, Sum P(3) = 2.5e-114
Identities = 9/28 (32%), Positives = 16/28 (57%)
Query: 517 EDDKDSDPVAVNGKVQDESAVSTEDLGE 544
E ++ SDP + +G + S+ S+E E
Sbjct: 37 ESEQGSDPGSGHGSESNSSSESSESQSE 64
Score = 37 (18.1 bits), Expect = 1.1e-123, Sum P(4) = 1.1e-123
Identities = 13/45 (28%), Positives = 19/45 (42%)
Query: 29 PGLSNGKEENLVTSESPRNTPSAKRRLKNEINADRSSTKKKGNDG 73
P N KEE SES +R+LK + R ++ + G
Sbjct: 118 PSRFNIKEEASSGSESGSPKRRGQRQLKKQEKWKREPSEDEQEQG 162
>UNIPROTKB|E2R5Z7 [details] [associations]
symbol:CHD2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 GeneTree:ENSGT00560000076896
EMBL:AAEX03002279 EMBL:AAEX03002280 Ensembl:ENSCAFT00000017614
NextBio:20854276 Uniprot:E2R5Z7
Length = 1831
Score = 1107 (394.7 bits), Expect = 6.0e-125, Sum P(4) = 6.0e-125
Identities = 256/620 (41%), Positives = 367/620 (59%)
Query: 679 EAFVKWTGLPYDECTWEKLDEPAL-EKYSHLTDLFVQFERQTLKKDASEDELPRGKGDCQ 737
E KW GLPY EC+WE DE + +K+ D F + K E K Q
Sbjct: 415 EYLCKWMGLPYSECSWE--DEALIGKKFQSCID---SFHSRNNSKTIPTRECKALK---Q 466
Query: 738 QSEIVALTEQPEELKGG--ALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFI 795
+ VAL +QP L G L +QLE LNWL W KS +VILADEMGLGKT+ +F+
Sbjct: 467 RPRFVALKKQPTYLGGENLELRDYQLEGLNWLAHSWCKSNSVILADEMGLGKTIQTISFL 526
Query: 796 SSLYCEFKAKLPCLVLVPLSTMPNWLAEFALWAPNLNVVEYHGCAKARAIIRQYEWHASD 855
S L+ + + P L++VPLST+ +W EF +WAP +NVV Y G +R IR+YEW
Sbjct: 527 SYLFHQHQLYGPFLIVVPLSTLTSWQREFEIWAPEINVVVYIGDLMSRNTIREYEW---- 582
Query: 856 PDNLNKKTSSYKFNVLLTTYEMILADSSHLRGVPWEVLVVDEGHRXXXXXXXXXXXXXXX 915
++ +T KFN L+TTYE++L D + L + W L VDE HR
Sbjct: 583 ---IHSQTKRLKFNALITTYEILLKDKTVLGSINWAFLGVDEAHRLKNDDSLLYKTLIDF 639
Query: 916 XXQHRVLLTGTPLQNNIGEMYNLLNFLQPASFPSLSSFEEKFNDLTTTQKVEELKKLVAP 975
HR+L+TGTPLQN++ E+++LL+F+ P F FEE + L K++ P
Sbjct: 640 KSHHRLLITGTPLQNSLKELWSLLHFIMPEKFEFWEDFEEDHGK-GRENGYQSLHKVLEP 698
Query: 976 HMLRRLKKDAMQNIPPKTERMVPVELSSIQAEYYRAMLTKNYQILRNIGKGVAQQSMLNI 1035
+LRR+KKD +++P K E+++ VE+S++Q +YY+ +LT+NY+ L +G + LNI
Sbjct: 699 FLLRRVKKDVEKSLPAKVEQILRVEMSALQKQYYKWILTRNYKALAKGTRG-STSGFLNI 757
Query: 1036 VMQLRKVCNHPYLI-PGTEPD-SGSVEFLHEMRIKASAKLTLLHSMLKVLYKEGHRVLIF 1093
VM+L+K CNH YLI P E + E L + I++S KL LL +L L + G+RVLIF
Sbjct: 758 VMELKKCCNHCYLIKPPEENERENGQEVLLSL-IRSSGKLILLDKLLTRLRERGNRVLIF 816
Query: 1094 SQMTKLLDILEDYLNIEFGPKTYERVDGSVSVGDRQAAITRFNQDKSR-FVFLLSTRSCG 1152
SQM ++LDIL +YL I+ P ++R+DGS+ R+ A+ FN D S F FLLSTR+ G
Sbjct: 817 SQMVRMLDILAEYLTIKHYP--FQRLDGSIKGEIRKQALDHFNADGSEDFCFLLSTRAGG 874
Query: 1153 LGINLATADTVIIYDSDFNPHADIQAMNRAHRIGQSKRLLVYRLVVRASVEERILQLAKK 1212
LGINLA+ADTV+I+DSD+NP D+QA RAHRIGQ K++ +YRLV + +VEE I++ AKK
Sbjct: 875 LGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGTVEEEIIERAKK 934
Query: 1213 KLMLDQLFV------------NKSG-------SQKEVEDILRWGTEELFNDSPGINGKDM 1253
K++LD L + N SG +++E+ IL++G E+LF + + G++
Sbjct: 935 KMVLDHLVIQRMDTTGRTVLENNSGRSNSNPFNKEELTAILKFGAEDLFKE---LEGEES 991
Query: 1254 GENNTSIEEAVRDLEQKHRK 1273
I+E +R E + +
Sbjct: 992 EPQEMDIDEILRLAETRENE 1011
Score = 113 (44.8 bits), Expect = 6.0e-125, Sum P(4) = 6.0e-125
Identities = 50/186 (26%), Positives = 82/186 (44%)
Query: 474 SSDEECMKNDIGVDRIQVYRRSVTKECKVTKECKGENAIDLLREDDKDSDPVAVNGKVQD 533
S++ E + + R V RR+V K +V K+ K + R+D D D +
Sbjct: 165 SAESEAEQKKVKARR-PVPRRTVPKP-RVKKQPKTQRG-KRKRQDSSDDDDEDDEAPKRQ 221
Query: 534 ESAVSTEDLGERNDKMVVEDADVSLRDNEGLTVSEIHITCESTDKDVD--VGKKTSGSVA 591
+ +++ + D D+D L + G E E+ +K +D +GKK + +
Sbjct: 222 TRRRAAKNVSYKEDDDFETDSD-DLIEMTGEGADEQQDNSETIEKVLDSRLGKKGATGAS 280
Query: 592 KRVQEPAVTESAQVKG-----KAVS-YEFLVKWVGKSNIHNSWIPESQL---KVLAKRKL 642
V A+ + G K S ++L+KW G S IH++W E L KV +KL
Sbjct: 281 TTVY--AIEANGDPSGDFDTEKDESEVQYLIKWKGWSYIHSTWESEESLQQQKVKGLKKL 338
Query: 643 ENYKAK 648
EN+K K
Sbjct: 339 ENFKKK 344
Score = 59 (25.8 bits), Expect = 2.8e-119, Sum P(4) = 2.8e-119
Identities = 34/167 (20%), Positives = 70/167 (41%)
Query: 507 KGENAIDLLREDDKDSDPVAVNGKVQDESAVSTED-LGERNDKMVVEDADVSLRDNEGLT 565
KG + I E ++ V G + E+ ED + + K+ ED + E
Sbjct: 312 KGWSYIHSTWESEESLQQQKVKGLKKLENFKKKEDEIKQWLGKVSPEDVEYFNCQQE--L 369
Query: 566 VSEIHITCESTDKDVDVGKKTSGSVAKRVQEPAVTESAQVKGKAVSYEFLVKWVGKSNIH 625
SE++ + ++ + V KTS S + P ++ + E+L KW+G
Sbjct: 370 ASELNKQYQIVERVIAV--KTSKSTLGQTDFPDEIAHSRKPAPSNEPEYLCKWMGLPYSE 427
Query: 626 NSWIPESQLKVLAKRKLENYKAKYGTTVINICD-ERWKQPQRVISLR 671
SW E+ + + ++++ ++ + I + + KQ R ++L+
Sbjct: 428 CSWEDEALIGKKFQSCIDSFHSRNNSKTIPTRECKALKQRPRFVALK 474
Score = 50 (22.7 bits), Expect = 6.0e-125, Sum P(4) = 6.0e-125
Identities = 31/116 (26%), Positives = 51/116 (43%)
Query: 193 DSSQVDVSCSTKPENTSAGVPVEGSSSCPNDDDEKQLNASPTDSLADTKFHPAEEVLPHS 252
+S+ S ++ E+ S GS S P + K+ AS + +AD K EE
Sbjct: 52 ESNSSSESSESQSESESESA---GSKSQPVLPEAKEKPASKKERIADVK-KMWEEYPDVY 107
Query: 253 QVTKSEQNDEVPVE---KHEKSSTNGSSGIKFVLAIGASERDR-KRKPEVKDEDSQ 304
V +S ++ + P K E SS + S K ++++ KR+P +DE Q
Sbjct: 108 GVRRSNRSRQEPSRFNIKEEASSGSESGSPKRRGQRQLKKQEKWKREPS-EDEQEQ 162
Score = 42 (19.8 bits), Expect = 4.2e-124, Sum P(4) = 4.2e-124
Identities = 16/58 (27%), Positives = 30/58 (51%)
Query: 255 TKSEQNDEVPVEKH--EKSSTNGSSGIKFVL-AIGASERDRKRKPEVKDEDSQKKLRV 309
++SEQ + P H E +S++ SS + + A + + PE K++ + KK R+
Sbjct: 37 SESEQGSD-PGSGHGSESNSSSESSESQSESESESAGSKSQPVLPEAKEKPASKKERI 93
Score = 42 (19.8 bits), Expect = 2.6e-114, Sum P(3) = 2.6e-114
Identities = 14/62 (22%), Positives = 29/62 (46%)
Query: 483 DIGVDRIQVYRRSVTKECKVTKECKGENAIDLLREDDKDSDPVAVNGKVQDESAVSTEDL 542
D+G D + ++ ++E G ++ E ++ SDP + +G + S+ S+E
Sbjct: 6 DVGNDDGNIIC-NINLSHSASEEASGSDS-GSQSESEQGSDPGSGHGSESNSSSESSESQ 63
Query: 543 GE 544
E
Sbjct: 64 SE 65
Score = 41 (19.5 bits), Expect = 6.0e-125, Sum P(4) = 6.0e-125
Identities = 24/108 (22%), Positives = 42/108 (38%)
Query: 1265 RDLEQKHRKRGGGLGDVYQDKCT---EGSTKIVWDENAIARLLDR-SNLQSGSTDLAEGD 1320
+ LE+K GG + + K E + DE+ + R S+ S ++ +
Sbjct: 1327 KSLEKKGAVTGGEEAKLKKRKPRVKKENKEPRLKDEHGVEFSSPRHSDNPSEEGEVKDDG 1386
Query: 1321 LENDMLGSVKATEWNEETTEDQAESPVAAVDDASAENSERKEENAVTG 1368
LE + + + N+E E Q S D + S+ K+E G
Sbjct: 1387 LEKSPMKKKQKKKENKENKEKQMSSRKDKEGDKERKKSKDKKEKPKGG 1434
Score = 37 (18.1 bits), Expect = 1.4e-123, Sum P(4) = 1.4e-123
Identities = 13/45 (28%), Positives = 19/45 (42%)
Query: 29 PGLSNGKEENLVTSESPRNTPSAKRRLKNEINADRSSTKKKGNDG 73
P N KEE SES +R+LK + R ++ + G
Sbjct: 119 PSRFNIKEEASSGSESGSPKRRGQRQLKKQEKWKREPSEDEQEQG 163
>UNIPROTKB|J9PA90 [details] [associations]
symbol:CHD2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 GeneTree:ENSGT00560000076896
OMA:AHSWCKN EMBL:AAEX03002279 EMBL:AAEX03002280
Ensembl:ENSCAFT00000045903 Uniprot:J9PA90
Length = 1840
Score = 1107 (394.7 bits), Expect = 6.7e-125, Sum P(4) = 6.7e-125
Identities = 256/620 (41%), Positives = 367/620 (59%)
Query: 679 EAFVKWTGLPYDECTWEKLDEPAL-EKYSHLTDLFVQFERQTLKKDASEDELPRGKGDCQ 737
E KW GLPY EC+WE DE + +K+ D F + K E K Q
Sbjct: 425 EYLCKWMGLPYSECSWE--DEALIGKKFQSCID---SFHSRNNSKTIPTRECKALK---Q 476
Query: 738 QSEIVALTEQPEELKGG--ALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFI 795
+ VAL +QP L G L +QLE LNWL W KS +VILADEMGLGKT+ +F+
Sbjct: 477 RPRFVALKKQPTYLGGENLELRDYQLEGLNWLAHSWCKSNSVILADEMGLGKTIQTISFL 536
Query: 796 SSLYCEFKAKLPCLVLVPLSTMPNWLAEFALWAPNLNVVEYHGCAKARAIIRQYEWHASD 855
S L+ + + P L++VPLST+ +W EF +WAP +NVV Y G +R IR+YEW
Sbjct: 537 SYLFHQHQLYGPFLIVVPLSTLTSWQREFEIWAPEINVVVYIGDLMSRNTIREYEW---- 592
Query: 856 PDNLNKKTSSYKFNVLLTTYEMILADSSHLRGVPWEVLVVDEGHRXXXXXXXXXXXXXXX 915
++ +T KFN L+TTYE++L D + L + W L VDE HR
Sbjct: 593 ---IHSQTKRLKFNALITTYEILLKDKTVLGSINWAFLGVDEAHRLKNDDSLLYKTLIDF 649
Query: 916 XXQHRVLLTGTPLQNNIGEMYNLLNFLQPASFPSLSSFEEKFNDLTTTQKVEELKKLVAP 975
HR+L+TGTPLQN++ E+++LL+F+ P F FEE + L K++ P
Sbjct: 650 KSHHRLLITGTPLQNSLKELWSLLHFIMPEKFEFWEDFEEDHGK-GRENGYQSLHKVLEP 708
Query: 976 HMLRRLKKDAMQNIPPKTERMVPVELSSIQAEYYRAMLTKNYQILRNIGKGVAQQSMLNI 1035
+LRR+KKD +++P K E+++ VE+S++Q +YY+ +LT+NY+ L +G + LNI
Sbjct: 709 FLLRRVKKDVEKSLPAKVEQILRVEMSALQKQYYKWILTRNYKALAKGTRG-STSGFLNI 767
Query: 1036 VMQLRKVCNHPYLI-PGTEPD-SGSVEFLHEMRIKASAKLTLLHSMLKVLYKEGHRVLIF 1093
VM+L+K CNH YLI P E + E L + I++S KL LL +L L + G+RVLIF
Sbjct: 768 VMELKKCCNHCYLIKPPEENERENGQEVLLSL-IRSSGKLILLDKLLTRLRERGNRVLIF 826
Query: 1094 SQMTKLLDILEDYLNIEFGPKTYERVDGSVSVGDRQAAITRFNQDKSR-FVFLLSTRSCG 1152
SQM ++LDIL +YL I+ P ++R+DGS+ R+ A+ FN D S F FLLSTR+ G
Sbjct: 827 SQMVRMLDILAEYLTIKHYP--FQRLDGSIKGEIRKQALDHFNADGSEDFCFLLSTRAGG 884
Query: 1153 LGINLATADTVIIYDSDFNPHADIQAMNRAHRIGQSKRLLVYRLVVRASVEERILQLAKK 1212
LGINLA+ADTV+I+DSD+NP D+QA RAHRIGQ K++ +YRLV + +VEE I++ AKK
Sbjct: 885 LGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGTVEEEIIERAKK 944
Query: 1213 KLMLDQLFV------------NKSG-------SQKEVEDILRWGTEELFNDSPGINGKDM 1253
K++LD L + N SG +++E+ IL++G E+LF + + G++
Sbjct: 945 KMVLDHLVIQRMDTTGRTVLENNSGRSNSNPFNKEELTAILKFGAEDLFKE---LEGEES 1001
Query: 1254 GENNTSIEEAVRDLEQKHRK 1273
I+E +R E + +
Sbjct: 1002 EPQEMDIDEILRLAETRENE 1021
Score = 113 (44.8 bits), Expect = 6.7e-125, Sum P(4) = 6.7e-125
Identities = 50/186 (26%), Positives = 82/186 (44%)
Query: 474 SSDEECMKNDIGVDRIQVYRRSVTKECKVTKECKGENAIDLLREDDKDSDPVAVNGKVQD 533
S++ E + + R V RR+V K +V K+ K + R+D D D +
Sbjct: 178 SAESEAEQKKVKARR-PVPRRTVPKP-RVKKQPKTQRG-KRKRQDSSDDDDEDDEAPKRQ 234
Query: 534 ESAVSTEDLGERNDKMVVEDADVSLRDNEGLTVSEIHITCESTDKDVD--VGKKTSGSVA 591
+ +++ + D D+D L + G E E+ +K +D +GKK + +
Sbjct: 235 TRRRAAKNVSYKEDDDFETDSD-DLIEMTGEGADEQQDNSETIEKVLDSRLGKKGATGAS 293
Query: 592 KRVQEPAVTESAQVKG-----KAVS-YEFLVKWVGKSNIHNSWIPESQL---KVLAKRKL 642
V A+ + G K S ++L+KW G S IH++W E L KV +KL
Sbjct: 294 TTVY--AIEANGDPSGDFDTEKDESEVQYLIKWKGWSYIHSTWESEESLQQQKVKGLKKL 351
Query: 643 ENYKAK 648
EN+K K
Sbjct: 352 ENFKKK 357
Score = 58 (25.5 bits), Expect = 4.0e-119, Sum P(4) = 4.0e-119
Identities = 35/167 (20%), Positives = 70/167 (41%)
Query: 507 KGENAIDLLREDDKDSDPVAVNGKVQDESAVSTED-LGERNDKMVVEDADVSLRDNEGLT 565
KG + I E ++ V G + E+ ED + + K+ ED + E
Sbjct: 325 KGWSYIHSTWESEESLQQQKVKGLKKLENFKKKEDEIKQWLGKVSPEDVEYFNCQQE--L 382
Query: 566 VSEIHITCESTDKDVDVGKKTSGSVAKRVQEPAVTESAQVKGKAVSYEFLVKWVGKSNIH 625
SE++ + ++ + V KTS S + PA + + E+L KW+G
Sbjct: 383 ASELNKQYQIVERVIAV--KTSKSTLGQTDFPAHSRKPAPSNEP---EYLCKWMGLPYSE 437
Query: 626 NSWIPESQLKVLAKRKLENYKAKYGTTVINICD-ERWKQPQRVISLR 671
SW E+ + + ++++ ++ + I + + KQ R ++L+
Sbjct: 438 CSWEDEALIGKKFQSCIDSFHSRNNSKTIPTRECKALKQRPRFVALK 484
Score = 50 (22.7 bits), Expect = 6.7e-125, Sum P(4) = 6.7e-125
Identities = 31/116 (26%), Positives = 51/116 (43%)
Query: 193 DSSQVDVSCSTKPENTSAGVPVEGSSSCPNDDDEKQLNASPTDSLADTKFHPAEEVLPHS 252
+S+ S ++ E+ S GS S P + K+ AS + +AD K EE
Sbjct: 65 ESNSSSESSESQSESESESA---GSKSQPVLPEAKEKPASKKERIADVK-KMWEEYPDVY 120
Query: 253 QVTKSEQNDEVPVE---KHEKSSTNGSSGIKFVLAIGASERDR-KRKPEVKDEDSQ 304
V +S ++ + P K E SS + S K ++++ KR+P +DE Q
Sbjct: 121 GVRRSNRSRQEPSRFNIKEEASSGSESGSPKRRGQRQLKKQEKWKREPS-EDEQEQ 175
Score = 42 (19.8 bits), Expect = 4.6e-124, Sum P(4) = 4.6e-124
Identities = 16/58 (27%), Positives = 30/58 (51%)
Query: 255 TKSEQNDEVPVEKH--EKSSTNGSSGIKFVL-AIGASERDRKRKPEVKDEDSQKKLRV 309
++SEQ + P H E +S++ SS + + A + + PE K++ + KK R+
Sbjct: 50 SESEQGSD-PGSGHGSESNSSSESSESQSESESESAGSKSQPVLPEAKEKPASKKERI 106
Score = 41 (19.5 bits), Expect = 6.7e-125, Sum P(4) = 6.7e-125
Identities = 24/108 (22%), Positives = 42/108 (38%)
Query: 1265 RDLEQKHRKRGGGLGDVYQDKCT---EGSTKIVWDENAIARLLDR-SNLQSGSTDLAEGD 1320
+ LE+K GG + + K E + DE+ + R S+ S ++ +
Sbjct: 1336 KSLEKKGAVTGGEEAKLKKRKPRVKKENKEPRLKDEHGVEFSSPRHSDNPSEEGEVKDDG 1395
Query: 1321 LENDMLGSVKATEWNEETTEDQAESPVAAVDDASAENSERKEENAVTG 1368
LE + + + N+E E Q S D + S+ K+E G
Sbjct: 1396 LEKSPMKKKQKKKENKENKEKQMSSRKDKEGDKERKKSKDKKEKPKGG 1443
Score = 41 (19.5 bits), Expect = 3.5e-114, Sum P(3) = 3.5e-114
Identities = 9/28 (32%), Positives = 16/28 (57%)
Query: 517 EDDKDSDPVAVNGKVQDESAVSTEDLGE 544
E ++ SDP + +G + S+ S+E E
Sbjct: 51 ESEQGSDPGSGHGSESNSSSESSESQSE 78
Score = 37 (18.1 bits), Expect = 1.6e-123, Sum P(4) = 1.6e-123
Identities = 13/45 (28%), Positives = 19/45 (42%)
Query: 29 PGLSNGKEENLVTSESPRNTPSAKRRLKNEINADRSSTKKKGNDG 73
P N KEE SES +R+LK + R ++ + G
Sbjct: 132 PSRFNIKEEASSGSESGSPKRRGQRQLKKQEKWKREPSEDEQEQG 176
>UNIPROTKB|Q06A37 [details] [associations]
symbol:CHD7 "Chromodomain-helicase-DNA-binding protein 7"
species:9031 "Gallus gallus" [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0016568 "chromatin modification"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271
Pfam:PF07533 PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 SMART:SM00592 SMART:SM00717
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0003677 GO:GO:0006351 GO:GO:0003682 GO:GO:0016568
GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
PROSITE:PS00598 HOVERGEN:HBG081150 EMBL:DQ978381 IPI:IPI00590082
RefSeq:NP_001071054.1 UniGene:Gga.20865 ProteinModelPortal:Q06A37
SMR:Q06A37 GeneID:421140 KEGG:gga:421140 CTD:55636
HOGENOM:HOG000246942 InParanoid:Q06A37 KO:K14437 OrthoDB:EOG4MCWZD
NextBio:20823957 Uniprot:Q06A37
Length = 3011
Score = 1175 (418.7 bits), Expect = 9.6e-125, Sum P(4) = 9.6e-125
Identities = 298/783 (38%), Positives = 424/783 (54%)
Query: 517 EDDKDSDPVAVNGKVQDESAVSTEDLGERNDKMVVEDADVSLRDNEGLTV-SEIHITCES 575
ED+ D Q + TEDL + +DAD + RD+ T SE ES
Sbjct: 739 EDEDDPGVQKRRSSRQVKRKRYTEDLEFKISDEEADDADAAGRDSPSNTSQSEQQ---ES 795
Query: 576 TDKDVDVGKK--TSGSVAKRVQEPAVTESAQVKGKAVSYEFLVKWVGKSNIHNSW--IPE 631
D + V +K +S SV K+++ E +++ EF VK+ S +H W + E
Sbjct: 796 ADAEGPVVEKIMSSRSVKKKMENG---EEVEIE------EFYVKYKNFSYLHCQWASVEE 846
Query: 632 SQLKVLAKRKLENYKAKYGTT--VINICDERWK----QPQRVISLRSSKDGTREA----F 681
++K++ +KAK G + I DE + + R++ S D E
Sbjct: 847 LDKDKRIQQKIKRFKAKQGQNKFLSEIDDELFNPDYVEIDRILDFSRSTDDNGEPVTHYL 906
Query: 682 VKWTGLPYDECTWEKLDEPALEKYSHLTDLFVQFERQTLKKDASEDELPRGKGDCQQSEI 741
VKW LPY++ TWE + K +FE+ + ++ + + R D +
Sbjct: 907 VKWCSLPYEDSTWELKQDIDQAKIE-------EFEK-LMSREPEMERVERPPADDWKK-- 956
Query: 742 VALTEQPEELKGG-ALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYC 800
+E E K L +QLE +NWL W+ ++N ILADEMGLGKT+ + F+ +Y
Sbjct: 957 ---SESSREYKNNNKLREYQLEGVNWLLFNWYNTRNCILADEMGLGKTIQSITFLYEIYL 1013
Query: 801 EFKAKLPCLVLVPLSTMPNWLAEFALWAPNLNVVEYHGCAKARAIIRQYEWHASDPDNLN 860
+ P LV+ PLST+PNW EF W LNVV YHG +R I+ YE + DP
Sbjct: 1014 K-GIHGPFLVIAPLSTIPNWEREFRTWT-ELNVVVYHGSQASRRTIQLYEMYFKDPQGRV 1071
Query: 861 KKTSSYKFNVLLTTYEMILADSSHLRGVPWEVLVVDEGHRXXXXXXXXXXXXXXXXXQHR 920
K SYKF+ ++TT+EMIL D LR +PW +V+DE HR +H+
Sbjct: 1072 IK-GSYKFHAIITTFEMILTDCPELRNIPWRCVVIDEAHRLKNRNCKLLEGLKMMDLEHK 1130
Query: 921 VLLTGTPLQNNIGEMYNLLNFLQPASFPSLSSFEEKFNDLTTTQKVEELKKLVAPHMLRR 980
VLLTGTPLQN + E+++LL+FL+P FPS ++F ++F DL T ++V++L+ ++ P MLRR
Sbjct: 1131 VLLTGTPLQNTVEELFSLLHFLEPGRFPSETTFMQEFGDLKTEEQVQKLQAILKPMMLRR 1190
Query: 981 LKKDAMQNIPPKTERMVPVELSSIQAEYYRAMLTKNYQILRNIGKGVAQQSMLNIVMQLR 1040
LK+D +N+ PK E ++ VEL++IQ +YYRA+L KN+ L G ++LN +M+LR
Sbjct: 1191 LKEDVEKNLAPKEETIIEVELTNIQKKYYRAILEKNFAFLSKGGGQANVPNLLNTMMELR 1250
Query: 1041 KVCNHPYLIPGTEP----------DSGSVEFLHEMRIKASAKLTLLHSMLKVLYKEGHRV 1090
K CNHPYLI G E ++ S +F + I+A+ KL L+ +L L GHRV
Sbjct: 1251 KCCNHPYLINGAEEKILEEFKETHNADSPDFQLQAMIQAAGKLVLIDKLLPKLKAGGHRV 1310
Query: 1091 LIFSQMTKLLDILEDYLNIEFGPKTYERVDGSVSVGDRQAAITRFNQ-DKSRFVFLLSTR 1149
LIFSQM + LDILEDYL P YER+DG V RQAAI RF++ D RFVFLL TR
Sbjct: 1311 LIFSQMVRCLDILEDYLIQRRYP--YERIDGRVRGNLRQAAIDRFSRPDSDRFVFLLCTR 1368
Query: 1150 SCGLGINLATADTVIIYDSDFNPHADIQAMNRAHRIGQSKRLLVYRLVVRASVEERILQL 1209
+ GLGINL ADT II+DSD+NP D+QA R HRIGQSK + +YRL+ R S E +
Sbjct: 1369 AGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKSVKIYRLITRNSYEREMFDK 1428
Query: 1210 AKKKLMLDQLFVNK-SGSQKEVEDILRWGTEELFND--SPGINGKDMGENNTSIEEAVRD 1266
A KL LD+ + SG + + + +E+ D G G M E + + D
Sbjct: 1429 ASLKLGLDKAVLQSMSGRENATNGVQQLSKKEI-EDLLRKGAYGALMDEEDEGSKFCEED 1487
Query: 1267 LEQ 1269
++Q
Sbjct: 1488 IDQ 1490
Score = 67 (28.6 bits), Expect = 9.6e-125, Sum P(4) = 9.6e-125
Identities = 35/151 (23%), Positives = 61/151 (40%)
Query: 28 GPGLSNGKEENLVTSESPRNTPSAKRRLKNEINADRSSTKKKGNDGYYYECVICDLGGNL 87
GP K ++ + S P+ K++ N I A+ S K G + + +L N
Sbjct: 580 GPNTQLVKSDDYLPSVEPQPQQKKKKKKNNHIAAEGPS-KSFGKEDFPGGLDSQNLSRNS 638
Query: 88 LCCDSCPRTYHLQCLDPPLKRIPNGKWQCPKCTQKNDQLKPISNLDSISKRARSKIITIK 147
+ C + + P K+ P + PK +K + + K ++K T K
Sbjct: 639 VDCSQEDKKKKKK---PKAKKEPKDPKE-PK-EKKEPKTPKVPKTPKEPKEKKAKNTTPK 693
Query: 148 SQSGVKSSGADKVSQIFGNSILARKRSNKGK 178
++ K+S S+ S A+K+ NKGK
Sbjct: 694 PKTSKKTSNKKTDSE----SSAAKKKVNKGK 720
Score = 52 (23.4 bits), Expect = 9.6e-125, Sum P(4) = 9.6e-125
Identities = 14/39 (35%), Positives = 22/39 (56%)
Query: 1329 VKATEWNEETTEDQAESPVAAVDDASA-ENSERKEENAV 1366
V +T EE + +Q ES V ++ +A E S+ KEE +
Sbjct: 2160 VPSTPVQEEKSTEQTESKVEGSENPAAKEKSDIKEETDI 2198
Score = 51 (23.0 bits), Expect = 4.6e-123, Sum P(4) = 4.6e-123
Identities = 14/56 (25%), Positives = 27/56 (48%)
Query: 19 KRKRRKLPCGPGLSNGKEENLVTSESPRNTPSAKRRLKNE-INADRSSTKKKGNDG 73
++K K P P +E + +P+ P ++ N+ +++ S+ KKK N G
Sbjct: 666 EKKEPKTPKVPKTPKEPKEKKAKNTTPK--PKTSKKTSNKKTDSESSAAKKKVNKG 719
Score = 50 (22.7 bits), Expect = 2.5e-124, Sum P(4) = 2.5e-124
Identities = 17/57 (29%), Positives = 26/57 (45%)
Query: 1311 SGSTDLAEGDLENDMLGSVKATEWNEETTEDQAESPVAAVDDASAENSERKEENAVT 1367
+G+ A G E + G+ KA E E E+ +S + D SA +S +A T
Sbjct: 2826 TGNATTASGQGETED-GASKAEEKKNENEEENKDSE-KSTDTVSATDSANGSVSAAT 2880
Score = 42 (19.8 bits), Expect = 8.7e-124, Sum P(5) = 8.7e-124
Identities = 31/155 (20%), Positives = 54/155 (34%)
Query: 243 HPAEEVLPHSQVTKSEQN--DEVPVEKHEKSSTNGSSGIKFVLAIGASERDRKRK----P 296
HP + P +Q+ +S QN +VPV +H S + + + + P
Sbjct: 536 HPHHQ--PWAQLHQSPQNTPQKVPVLQHSPSEPFLEKPVPDMTQVSGPNTQLVKSDDYLP 593
Query: 297 EVKDEDSQKKLRVDXXXXXXXXXXXXXXXIGTLSPGTSKLHEKQRTNNDEVSASLCEVDV 356
V+ + QKK + I P S E D + S VD
Sbjct: 594 SVEPQPQQKKKK------------KKNNHIAAEGPSKSFGKEDFPGGLDSQNLSRNSVDC 641
Query: 357 GTKGLDAQRKDELAEETTDPLDKSDKAGVHVNEIP 391
+ ++K + +E DP + +K ++P
Sbjct: 642 SQEDKKKKKKPKAKKEPKDPKEPKEKKEPKTPKVP 676
Score = 42 (19.8 bits), Expect = 4.0e-122, Sum P(4) = 4.0e-122
Identities = 18/58 (31%), Positives = 25/58 (43%)
Query: 104 PPLKRIPNGKWQCPKCTQKNDQLKPISN--LDSISKRARSKIITIKSQSGVKSSGADK 159
P + P K + T K K SN DS S A+ K+ K + G ++S DK
Sbjct: 676 PKTPKEPKEK-KAKNTTPKPKTSKKTSNKKTDSESSAAKKKVN--KGKEGSENSDLDK 730
Score = 39 (18.8 bits), Expect = 9.6e-125, Sum P(4) = 9.6e-125
Identities = 10/39 (25%), Positives = 21/39 (53%)
Query: 1288 EGSTKIVWDENAIARLLDRSNLQSGSTDLAEGDLENDML 1326
+ S K+ D+ + + R N +G L++ ++E D+L
Sbjct: 1428 KASLKLGLDKAVLQSMSGRENATNGVQQLSKKEIE-DLL 1465
Score = 39 (18.8 bits), Expect = 8.7e-124, Sum P(5) = 8.7e-124
Identities = 6/15 (40%), Positives = 11/15 (73%)
Query: 98 HLQCLDPPLKRIPNG 112
H Q +PP+ ++P+G
Sbjct: 102 HSQYHNPPVPQVPHG 116
Score = 37 (18.1 bits), Expect = 1.6e-124, Sum P(4) = 1.6e-124
Identities = 8/33 (24%), Positives = 16/33 (48%)
Query: 1261 EEAVRDLEQKHRKRGGGLGDVYQDKCTEGSTKI 1293
EE++ KH + LG +Y + +T++
Sbjct: 1881 EESIEIHPNKHSESNSELGQLYWPNTSTLTTRL 1913
>UNIPROTKB|I3LQZ8 [details] [associations]
symbol:CHD2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 GeneTree:ENSGT00560000076896
EMBL:CT954235 EMBL:CU466964 Ensembl:ENSSSCT00000025402
Uniprot:I3LQZ8
Length = 1709
Score = 1146 (408.5 bits), Expect = 7.9e-124, Sum P(4) = 7.9e-124
Identities = 294/773 (38%), Positives = 421/773 (54%)
Query: 488 RIQVYRRSVTKECKVTKECKGENAIDLLRE--DDKDSDPVAVNGKVQDESAVSTEDLGER 545
R V RR+V K +V K+ K + ++ DD D D A + + +A + +
Sbjct: 182 RRPVPRRTVPKP-RVKKQPKTQRGKRKKQDSSDDDDEDDEAPKRQTRRRAAKNVSY--KE 238
Query: 546 NDKMVVEDADVSLRDNEGLTVSEIHITCESTDKDVDVGKK--TSGSVAKRVQEPAVTESA 603
+D + D+ EG+ + + D +GKK T S E S
Sbjct: 239 DDDFETDSDDLIEMTGEGVDEQQDNSETIEKVLDSRLGKKGATGASTTVYAIEANGDPSG 298
Query: 604 QVKGKAVSYE--FLVKWVGKSNIHNSWIPESQL---KVLAKRKLENYKAK---------- 648
+ E +L+KW G S IH++W E L KV +KLEN+K K
Sbjct: 299 DFDSEKDEGEVQYLIKWKGWSYIHSTWESEESLQQQKVKGLKKLENFKKKEDEIKQWLGK 358
Query: 649 -------YGTTVINICDERWKQPQ---RVISLRSSKDGTREAFV-KWTGLPYDECTWEKL 697
Y + E KQ Q RVI R ++ KW GLPY EC+WE
Sbjct: 359 VSPEDVEYFNCQQELASELNKQYQIVERVIGNRKPAPSNEPEYLCKWMGLPYSECSWE-- 416
Query: 698 DEPAL-EKYSHLTDLFVQFERQTLKKDASEDELPRGKGDCQQSEIVALTEQPEELKGG-- 754
DE + +K+ D F + K E K Q+ VAL +QP L G
Sbjct: 417 DEALIGKKFQSCID---SFHSRNNSKTIPTRECKALK---QRPRFVALKKQPAYLGGENL 470
Query: 755 ALFPHQLEALNWLRKCW-HKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVP 813
L +QLE LNWL W ++S +VILADEMGLGKT+ +F+S L+ + + P L++VP
Sbjct: 471 ELRDYQLEGLNWLAHSWCNRSNSVILADEMGLGKTIQTISFLSYLFHQHQLYGPFLIVVP 530
Query: 814 LSTMPNWLAEFALWAPNLNVVEYHGCAKARAIIRQYEWHASDPDNLNKKTSSYKFNVLLT 873
LST+ +W EF +WAP +NVV Y G +R IR+YEW ++ +T KFN L+T
Sbjct: 531 LSTLTSWQREFEIWAPEINVVVYIGDLMSRNTIREYEW-------IHSQTKRLKFNALIT 583
Query: 874 TYEMILADSSHLRGVPWEVLVVDEGHRXXXXXXXXXXXXXXXXXQHRVLLTGTPLQNNIG 933
TYE++L D + L + W L VDE HR HR+L+TGTPLQN++
Sbjct: 584 TYEILLKDKTVLGSINWAFLGVDEAHRLKNDDSLLYKTLIDFKSNHRLLITGTPLQNSLK 643
Query: 934 EMYNLLNFLQPASFPSLSSFEEKFNDLTTTQKVEELKKLVAPHMLRRLKKDAMQNIPPKT 993
E+++LL+F+ P F FEE + L K++ P +LRR+KKD +++P K
Sbjct: 644 ELWSLLHFIMPEKFEFWEDFEEDHGK-GRENGYQSLHKVLEPFLLRRVKKDVEKSLPAKV 702
Query: 994 ERMVPVELSSIQAEYYRAMLTKNYQILRNIGKGVAQQSMLNIVMQLRKVCNHPYLI-PGT 1052
E+++ VE+S++Q +YY+ +LT+NY+ L +G + LNIVM+L+K CNH YLI P
Sbjct: 703 EQILRVEMSALQKQYYKWILTRNYKALAKGTRG-STSGFLNIVMELKKCCNHCYLIKPPE 761
Query: 1053 EPD-SGSVEFLHEMRIKASAKLTLLHSMLKVLYKEGHRVLIFSQMTKLLDILEDYLNIEF 1111
E + E L + I++S KL LL +L L + G+RVLIFSQM ++LDIL +YL I+
Sbjct: 762 ENERENGQEILLSL-IRSSGKLILLDKLLTRLRERGNRVLIFSQMVRMLDILAEYLTIKH 820
Query: 1112 GPKTYERVDGSVSVGDRQAAITRFNQDKSR-FVFLLSTRSCGLGINLATADTVIIYDSDF 1170
P ++R+DGS+ R+ A+ FN D S F FLLSTR+ GLGINLA+ADTV+I+DSD+
Sbjct: 821 YP--FQRLDGSIKGEIRKQALDHFNADGSEDFCFLLSTRAGGLGINLASADTVVIFDSDW 878
Query: 1171 NPHADIQAMNRAHRIGQSKRLLVYRLVVRASVEERILQLAKKKLMLDQLFVNK 1223
NP D+QA RAHRIGQ K++ +YRLV + +VEE I++ AKKK++LD L + +
Sbjct: 879 NPQNDLQAQARAHRIGQKKQVNIYRLVTKGTVEEEIIERAKKKMVLDHLVIQR 931
Score = 53 (23.7 bits), Expect = 7.9e-124, Sum P(4) = 7.9e-124
Identities = 12/48 (25%), Positives = 27/48 (56%)
Query: 1226 SQKEVEDILRWGTEELFNDSPGINGKDMGENNTSIEEAVRDLEQKHRK 1273
+++E+ IL++G E+LF + + G++ I+E +R E + +
Sbjct: 953 NKEELTAILKFGAEDLFKE---LEGEESEPQEMDIDEILRLAETRENE 997
Score = 47 (21.6 bits), Expect = 7.9e-124, Sum P(4) = 7.9e-124
Identities = 32/120 (26%), Positives = 52/120 (43%)
Query: 193 DSSQVDVSCSTKPENTSAGVPVEGSSSCPNDDDEKQLNASPTDSLADTK--FHPA--EEV 248
+S+ S ++ E+ S GS S P + K+ AS + +AD K H EE
Sbjct: 51 ESNSSSESSESQSESESESA---GSKSQPVLPEAKEKPASKKERIADVKKKTHRCMWEEY 107
Query: 249 LPHSQVTKSEQNDEVPVE---KHEKSSTNGSSGIKFVLAIGASERDR-KRKPEVKDEDSQ 304
V +S ++ + P K E SS + S K ++++ KR+P +DE Q
Sbjct: 108 PDVYGVRRSNRSRQEPSRFNIKEEASSGSESGSPKRRGQRQLKKQEKWKREPS-EDEQEQ 166
Score = 42 (19.8 bits), Expect = 7.9e-124, Sum P(4) = 7.9e-124
Identities = 18/74 (24%), Positives = 30/74 (40%)
Query: 1296 DENAIARLLDR-SNLQSGSTDLAEGDLENDMLGSVKATEWNEETTEDQAESPVAAVDDAS 1354
DE+ I R S+ S ++ + LE + + + N+E E Q S D
Sbjct: 1347 DEHGIEFSSPRHSDNPSEEGEVKDDGLEKSPMKKKQKKKENKENKEKQMSSRKDKEGDKE 1406
Query: 1355 AENSERKEENAVTG 1368
+ S+ K+E G
Sbjct: 1407 RKKSKDKKEKKPKG 1420
Score = 37 (18.1 bits), Expect = 8.8e-123, Sum P(4) = 8.8e-123
Identities = 13/45 (28%), Positives = 19/45 (42%)
Query: 29 PGLSNGKEENLVTSESPRNTPSAKRRLKNEINADRSSTKKKGNDG 73
P N KEE SES +R+LK + R ++ + G
Sbjct: 123 PSRFNIKEEASSGSESGSPKRRGQRQLKKQEKWKREPSEDEQEQG 167
>UNIPROTKB|F1RT88 [details] [associations]
symbol:CHD7 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0060324 "face development" evidence=IEA] [GO:0060123
"regulation of growth hormone secretion" evidence=IEA] [GO:0060041
"retina development in camera-type eye" evidence=IEA] [GO:0060021
"palate development" evidence=IEA] [GO:0050890 "cognition"
evidence=IEA] [GO:0048844 "artery morphogenesis" evidence=IEA]
[GO:0048752 "semicircular canal morphogenesis" evidence=IEA]
[GO:0043584 "nose development" evidence=IEA] [GO:0040018 "positive
regulation of multicellular organism growth" evidence=IEA]
[GO:0035116 "embryonic hindlimb morphogenesis" evidence=IEA]
[GO:0030540 "female genitalia development" evidence=IEA]
[GO:0030217 "T cell differentiation" evidence=IEA] [GO:0021545
"cranial nerve development" evidence=IEA] [GO:0008015 "blood
circulation" evidence=IEA] [GO:0007628 "adult walking behavior"
evidence=IEA] [GO:0007605 "sensory perception of sound"
evidence=IEA] [GO:0007512 "adult heart development" evidence=IEA]
[GO:0007417 "central nervous system development" evidence=IEA]
[GO:0003007 "heart morphogenesis" evidence=IEA] [GO:0001701 "in
utero embryonic development" evidence=IEA] [GO:0001501 "skeletal
system development" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271
Pfam:PF07533 PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298
SMART:SM00490 SMART:SM00592 SMART:SM00717 Pfam:PF00385
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0008015
GO:GO:0003007 GO:GO:0050890 GO:GO:0001701 GO:GO:0040018
GO:GO:0007417 GO:GO:0003682 GO:GO:0001501 GO:GO:0060041
GO:GO:0007605 GO:GO:0007512 GO:GO:0004386 GO:GO:0035116
GO:GO:0060324 GO:GO:0060021 GO:GO:0048844 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0030540 GO:GO:0007628 GO:GO:0030217 GO:GO:0048752
InterPro:IPR023780 OMA:TFGVIFD GO:GO:0021545 GO:GO:0043584
GO:GO:0060123 GeneTree:ENSGT00560000077077 EMBL:CU179734
Ensembl:ENSSSCT00000006828 Uniprot:F1RT88
Length = 2991
Score = 1157 (412.3 bits), Expect = 9.8e-123, Sum P(5) = 9.8e-123
Identities = 297/783 (37%), Positives = 422/783 (53%)
Query: 517 EDDKDSDPVAVNGKVQDESAVSTEDLGERNDKMVVEDADVSLRDNEGLTV-SEIHITCES 575
EDD+D Q + TEDL + +DAD + RD+ T SE ES
Sbjct: 731 EDDEDPGVQKRRSSRQVKRKRYTEDLEFKISDEEPDDADAAGRDSPSNTSQSEQQ---ES 787
Query: 576 TDKDVDVGKKTSGSVAKRVQEPAVTESAQVKGKAVSYEFLVKWVGKSNIHNSWIPESQLK 635
D + V +K S + + Q+ + E +V+ EF VK+ S +H W L+
Sbjct: 788 VDAEGPVVEKIMSSRSVKKQKES-GEEVEVE------EFYVKYKNFSYLHCQWASVEDLE 840
Query: 636 V--LAKRKLENYKAKYGTT--VINICDERWK----QPQRVISLRSSKDGTREA----FVK 683
++K++ +KAK G + I DE + + R++ S D E VK
Sbjct: 841 KDKRIQQKIKRFKAKQGQNKFLSEIEDELFNPDYVEVDRIMDFARSTDDRGEPVTHYLVK 900
Query: 684 WTGLPYDECTWEKLDEPALEKYSHLTDLFVQFERQTLKKDASEDELPRGKGDCQQSEIVA 743
W LPY++ TWE + K +FE+ + ++ + + R D +
Sbjct: 901 WCSLPYEDSTWELRQDIDQAKIE-------EFEK-LMSREPETERVERPPADDWKK---- 948
Query: 744 LTEQPEELKGG-ALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEF 802
+E E K L +QLE +NWL W+ +N ILADEMGLGKT+ + F+ +Y +
Sbjct: 949 -SESSREYKNNNKLREYQLEGVNWLLFNWYNMRNCILADEMGLGKTIQSITFLYEIYLK- 1006
Query: 803 KAKLPCLVLVPLSTMPNWLAEFALWAPNLNVVEYHGCAKARAIIRQYEWHASDPDNLNKK 862
P LV+ PLST+PNW EF W LNVV YHG +R I+ YE + DP K
Sbjct: 1007 GIHGPFLVIAPLSTIPNWEREFRTWT-ELNVVVYHGSQASRRTIQLYEMYFKDPQGRVIK 1065
Query: 863 TSSYKFNVLLTTYEMILADSSHLRGVPWEVLVVDEGHRXXXXXXXXXXXXXXXXXQHRVL 922
SYKF+ ++TT+EMIL D LR +PW +V+DE HR +H+VL
Sbjct: 1066 -GSYKFHAIITTFEMILTDCPELRNIPWRCVVIDEAHRLKNRNCKLLEGLKMMDLEHKVL 1124
Query: 923 LTGTPLQNNIGEMYNLLNFLQPASFPSLSSFEEKFNDLTTTQKVEELKKLVAPHMLRRLK 982
LTGTPLQN + E+++LL+FL+P+ FPS ++F ++F DL T ++V++L+ ++ P MLRRLK
Sbjct: 1125 LTGTPLQNTVEELFSLLHFLEPSRFPSETTFMQEFGDLKTEEQVQKLQAILKPMMLRRLK 1184
Query: 983 KDAMQNIPPKTERMVPVELSSIQAEYYRAMLTKNYQILRNIGKGVAQQSMLNIVMQLRKV 1042
+D +N+ PK E ++ VEL++IQ +YYRA+L KN+ L G ++LN +M+LRK
Sbjct: 1185 EDVEKNLAPKEETIIEVELTNIQKKYYRAILEKNFTFLSKGGGQANVPNLLNTMMELRKC 1244
Query: 1043 CNHPYLIPGTEP----------DSGSVEFLHEMRIKASAKLTLLHSMLKVLYKEGHRVLI 1092
CNHPYLI G E ++ S +F + I+A+ KL L+ +L L GHRVLI
Sbjct: 1245 CNHPYLINGAEEKILEEFKETHNADSPDFQLQAMIQAAGKLVLIDKLLPKLKAGGHRVLI 1304
Query: 1093 FSQMTKLLDILEDYLNIEFGPKTYERVDGSVSVGDRQAAITRFNQ-DKSRFVFLLSTRSC 1151
FSQM + LDILEDYL P YER+DG V RQAAI RF++ D RFVFLL TR+
Sbjct: 1305 FSQMVRCLDILEDYLIQRRYP--YERIDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAG 1362
Query: 1152 GLGINLATADTVIIYDSDFNPH--ADIQAMNRAHRIGQSKRLLVYRLVVRASVEERILQL 1209
GLGINL ADT II+DSD+NP + QA R HRIGQSK + +YRL+ R S E +
Sbjct: 1363 GLGINLTAADTCIIFDSDWNPKMISSFQAQARCHRIGQSKSVKIYRLITRNSYEREMFDK 1422
Query: 1210 AKKKLMLDQLFVNK-SGSQKEVEDILRWGTEELFND--SPGINGKDMGENNTSIEEAVRD 1266
A KL LD+ + SG + + + +E+ D G G M E + + D
Sbjct: 1423 ASLKLGLDKAVLQSMSGRENAPNGVQQLSKKEI-EDLLRKGAYGALMDEEDEGSKFCEED 1481
Query: 1267 LEQ 1269
++Q
Sbjct: 1482 IDQ 1484
Score = 58 (25.5 bits), Expect = 9.8e-123, Sum P(5) = 9.8e-123
Identities = 30/132 (22%), Positives = 55/132 (41%)
Query: 255 TKSEQNDEVP--VEKHE--KSSTNGSSGIKFVLAIGASERDRKRKPEVKDEDSQKKLRVD 310
+KS D+VP V+ E ++S +GS K +++D K + K++ K+ +
Sbjct: 605 SKSFGKDDVPGGVDTQELNRNSLDGSQEEKKKKKRPKAKKDPKEPKDPKEKKEPKEPKTP 664
Query: 311 XXXXXXXXXXXXXXXIGTLSPGTSKLHEKQRTNNDEVSASLCEVDVG-TKGLDAQRKDEL 369
T P +SK ++ ++ E SA +V+ G T+G + D+
Sbjct: 665 KAPKIPKEPKEKKAKTATPKPKSSKKSSNKKPDS-EASALKKKVNKGKTEGSENSDLDKT 723
Query: 370 AEETTDPLDKSD 381
+ P D D
Sbjct: 724 PPPSPPPEDDED 735
Score = 53 (23.7 bits), Expect = 1.2e-118, Sum P(3) = 1.2e-118
Identities = 14/53 (26%), Positives = 26/53 (49%)
Query: 21 KRRKLPCGPGLSNGKEENLVTSESPRNTPSAKRRLKNEINADRSSTKKKGNDG 73
K K P P + +E + +P+ S+K+ + +++ S+ KKK N G
Sbjct: 659 KEPKTPKAPKIPKEPKEKKAKTATPK-PKSSKKSSNKKPDSEASALKKKVNKG 710
Score = 46 (21.3 bits), Expect = 9.8e-123, Sum P(5) = 9.8e-123
Identities = 17/53 (32%), Positives = 21/53 (39%)
Query: 202 STKPENTSAGVPVEGSSSCPND-DDEKQLNASPTDSLADTKFHPAEEVLPHSQ 253
S P N P G SS P + + N P LAD + E +LP Q
Sbjct: 442 SVGPRNMQQSRPFMGMSSAPRELAGHLRPNGCPGVGLADPQALQ-ERLLPGQQ 493
Score = 40 (19.1 bits), Expect = 1.9e-118, Sum P(4) = 1.9e-118
Identities = 12/43 (27%), Positives = 22/43 (51%)
Query: 117 PKCTQKNDQLKPISNLDSISKRARSKIITIKSQSGVKSSGADK 159
PK ++K+ KP S ++ K+ K++ G ++S DK
Sbjct: 685 PKSSKKSSNKKPDSEASALKKKVNKG----KTE-GSENSDLDK 722
Score = 39 (18.8 bits), Expect = 9.8e-123, Sum P(5) = 9.8e-123
Identities = 10/39 (25%), Positives = 21/39 (53%)
Query: 1288 EGSTKIVWDENAIARLLDRSNLQSGSTDLAEGDLENDML 1326
+ S K+ D+ + + R N +G L++ ++E D+L
Sbjct: 1422 KASLKLGLDKAVLQSMSGRENAPNGVQQLSKKEIE-DLL 1459
Score = 37 (18.1 bits), Expect = 9.8e-123, Sum P(5) = 9.8e-123
Identities = 6/15 (40%), Positives = 10/15 (66%)
Query: 98 HLQCLDPPLKRIPNG 112
H Q PP+ ++P+G
Sbjct: 102 HSQYHTPPVPQVPHG 116
>UNIPROTKB|F1PWD8 [details] [associations]
symbol:CHD7 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271 Pfam:PF07533
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
SMART:SM00592 SMART:SM00717 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0003682 GO:GO:0004386
InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR023780 OMA:TFGVIFD EMBL:AAEX03015818
EMBL:AAEX03015819 EMBL:AAEX03015820 Ensembl:ENSCAFT00000011497
GeneTree:ENSGT00700000105087 Uniprot:F1PWD8
Length = 2994
Score = 1175 (418.7 bits), Expect = 1.5e-122, Sum P(4) = 1.5e-122
Identities = 297/781 (38%), Positives = 423/781 (54%)
Query: 517 EDDKDSDPVAVNGKVQDESAVSTEDLGERNDKMVVEDADVSLRDNEGLTV-SEIHITCES 575
E+D+D Q + TEDL + +DAD + RD+ T SE ES
Sbjct: 737 EEDEDPGVQKRRSSRQVKRKRYTEDLEFKISDEEADDADTAGRDSPSNTSQSEQQ---ES 793
Query: 576 TDKDVDVGKKTSGSVAKRVQEPAVTESAQVKGKAVSYEFLVKWVGKSNIHNSWIPESQLK 635
D + V +K S + + Q+ + E +V+ EF VK+ S +H W L+
Sbjct: 794 VDAEGPVVEKIMSSRSVKKQKDS-GEEVEVE------EFYVKYKNFSYLHCQWASVEDLE 846
Query: 636 V--LAKRKLENYKAKYGTT--VINICDERWK----QPQRVISLRSSKDGTREA----FVK 683
++K++ +KAK G + I DE + + R++ S D E VK
Sbjct: 847 KDKRIQQKIKRFKAKQGQNKFLSEIEDELFNPDYVEVDRIMDFARSTDERGEPVTHYLVK 906
Query: 684 WTGLPYDECTWEKLDEPALEKYSHLTDLFVQFERQTLKKDASEDELPRGKGDCQQSEIVA 743
W LPY++ TWE + K +FE+ + ++ + + R D +
Sbjct: 907 WCSLPYEDSTWELRQDIDQAKIE-------EFEK-LMSREPETERVERPPADDWKK---- 954
Query: 744 LTEQPEELKGG-ALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEF 802
+E E K L +QLE +NWL W+ +N ILADEMGLGKT+ + F+ +Y +
Sbjct: 955 -SESSREYKNNNKLREYQLEGVNWLLFNWYNMRNCILADEMGLGKTIQSITFLYEIYLK- 1012
Query: 803 KAKLPCLVLVPLSTMPNWLAEFALWAPNLNVVEYHGCAKARAIIRQYEWHASDPDNLNKK 862
P LV+ PLST+PNW EF W LNVV YHG +R I+ YE + DP K
Sbjct: 1013 GIHGPFLVIAPLSTIPNWEREFRTWT-ELNVVVYHGSQASRRTIQSYEMYFKDPQGRVIK 1071
Query: 863 TSSYKFNVLLTTYEMILADSSHLRGVPWEVLVVDEGHRXXXXXXXXXXXXXXXXXQHRVL 922
SYKF+ ++TT+EMIL D LR +PW +V+DE HR +H+VL
Sbjct: 1072 -GSYKFHAIITTFEMILTDCPELRNIPWRCVVIDEAHRLKNRNCKLLEGLKMMDLEHKVL 1130
Query: 923 LTGTPLQNNIGEMYNLLNFLQPASFPSLSSFEEKFNDLTTTQKVEELKKLVAPHMLRRLK 982
LTGTPLQN + E+++LL+FL+P+ FPS ++F ++F DL T ++V++L+ ++ P MLRRLK
Sbjct: 1131 LTGTPLQNTVEELFSLLHFLEPSRFPSETTFMQEFGDLKTEEQVQKLQAILKPMMLRRLK 1190
Query: 983 KDAMQNIPPKTERMVPVELSSIQAEYYRAMLTKNYQILRNIGKGVAQQSMLNIVMQLRKV 1042
+D +N+ PK E ++ VEL++IQ +YYRA+L KN+ L G ++LN +M+LRK
Sbjct: 1191 EDVEKNLAPKEETIIEVELTNIQKKYYRAILEKNFTFLSKGGGQANVPNLLNTMMELRKC 1250
Query: 1043 CNHPYLIPGTEP----------DSGSVEFLHEMRIKASAKLTLLHSMLKVLYKEGHRVLI 1092
CNHPYLI G E ++ S +F + I+A+ KL L+ +L L GHRVLI
Sbjct: 1251 CNHPYLINGAEEKILEEFKETHNADSPDFQLQAMIQAAGKLVLIDKLLPKLKAGGHRVLI 1310
Query: 1093 FSQMTKLLDILEDYLNIEFGPKTYERVDGSVSVGDRQAAITRFNQ-DKSRFVFLLSTRSC 1151
FSQM + LDILEDYL P YER+DG V RQAAI RF++ D RFVFLL TR+
Sbjct: 1311 FSQMVRCLDILEDYLIQRRYP--YERIDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAG 1368
Query: 1152 GLGINLATADTVIIYDSDFNPHADIQAMNRAHRIGQSKRLLVYRLVVRASVEERILQLAK 1211
GLGINL ADT II+DSD+NP D+QA R HRIGQSK + +YRL+ R S E + A
Sbjct: 1369 GLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKSVKIYRLITRNSYEREMFDKAS 1428
Query: 1212 KKLMLDQLFVNK-SGSQKEVEDILRWGTEELFND--SPGINGKDMGENNTSIEEAVRDLE 1268
KL LD+ + SG + + + +E+ D G G M E + + D++
Sbjct: 1429 LKLGLDKAVLQSMSGRENATNGVQQLSKKEI-EDLLRKGAYGALMDEEDEGSKFCEEDID 1487
Query: 1269 Q 1269
Q
Sbjct: 1488 Q 1488
Score = 57 (25.1 bits), Expect = 1.5e-122, Sum P(4) = 1.5e-122
Identities = 28/115 (24%), Positives = 50/115 (43%)
Query: 205 PENTSAGVPV-EGSSSCPNDD----DEKQLNASPTDSLADTKFHPAEEVLPHSQVTKSEQ 259
P+NT VPV + S S P + D Q++ + + P+ E P Q K ++
Sbjct: 543 PQNTPQKVPVPQHSPSEPFLEKPVPDMTQVSGPNAQLVKSDDYLPSVEQQPQ-QKKKKKK 601
Query: 260 NDEVPVEKHEKS--STNGSSGI------KFVLAIGASERDRKRKPEVKDEDSQKK 306
N+ + E KS + G+ + L E+ +K++P+VK + + K
Sbjct: 602 NNHIVAEDPSKSFGKDDFPGGVDNQELNRNSLDGSQEEKKKKKRPKVKKDPKEPK 656
Score = 53 (23.7 bits), Expect = 5.7e-121, Sum P(3) = 5.7e-121
Identities = 14/53 (26%), Positives = 26/53 (49%)
Query: 21 KRRKLPCGPGLSNGKEENLVTSESPRNTPSAKRRLKNEINADRSSTKKKGNDG 73
K K P P + +E + +P+ S+K+ + +++ S+ KKK N G
Sbjct: 665 KEPKTPKAPKIPKEPKEKKAKTATPK-PKSSKKSSNKKPDSEASALKKKVNKG 716
Score = 45 (20.9 bits), Expect = 2.6e-121, Sum P(4) = 2.6e-121
Identities = 16/50 (32%), Positives = 20/50 (40%)
Query: 205 PENTSAGVPVEGSSSCPND-DDEKQLNASPTDSLADTKFHPAEEVLPHSQ 253
P N P G SS P + + N P LAD + E +LP Q
Sbjct: 451 PRNMQQSRPFMGMSSAPRELAGHMRPNGCPGVGLADPQAIQ-ERLLPGQQ 499
Score = 43 (20.2 bits), Expect = 1.5e-122, Sum P(4) = 1.5e-122
Identities = 15/47 (31%), Positives = 24/47 (51%)
Query: 1311 SGSTDLAEGDLENDML-GSVKATEWNEETTEDQAESP--VAAVDDAS 1354
+ +T +GD ++ G K E NEE +D +S V+A D A+
Sbjct: 2823 NATTASGQGDPDDGTSKGEEKGNE-NEEENKDSEKSTDAVSATDSAN 2868
Score = 40 (19.1 bits), Expect = 8.9e-121, Sum P(4) = 8.9e-121
Identities = 12/43 (27%), Positives = 22/43 (51%)
Query: 117 PKCTQKNDQLKPISNLDSISKRARSKIITIKSQSGVKSSGADK 159
PK ++K+ KP S ++ K+ K++ G ++S DK
Sbjct: 691 PKSSKKSSNKKPDSEASALKKKVNKG----KTE-GSENSDLDK 728
Score = 39 (18.8 bits), Expect = 3.8e-122, Sum P(4) = 3.8e-122
Identities = 10/39 (25%), Positives = 21/39 (53%)
Query: 1288 EGSTKIVWDENAIARLLDRSNLQSGSTDLAEGDLENDML 1326
+ S K+ D+ + + R N +G L++ ++E D+L
Sbjct: 1426 KASLKLGLDKAVLQSMSGRENATNGVQQLSKKEIE-DLL 1463
Score = 37 (18.1 bits), Expect = 1.5e-122, Sum P(4) = 1.5e-122
Identities = 6/15 (40%), Positives = 10/15 (66%)
Query: 98 HLQCLDPPLKRIPNG 112
H Q PP+ ++P+G
Sbjct: 102 HSQYHGPPVPQVPHG 116
>UNIPROTKB|B6ZLK2 [details] [associations]
symbol:CHD1 "Chromodomain-helicase-DNA-binding protein 1"
species:9031 "Gallus gallus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0000775
"chromosome, centromeric region" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013
PROSITE:PS51194 SMART:SM00298 SMART:SM00490 Pfam:PF00385
GO:GO:0005524 GO:GO:0005634 GO:GO:0000775 GO:GO:0006355
GO:GO:0003677 GO:GO:0006351 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR023780 InterPro:IPR023779
PROSITE:PS00598 EMBL:AB465210 IPI:IPI00573130 UniGene:Gga.4301
UniGene:Gga.8463 STRING:B6ZLK2 HOVERGEN:HBG005325
InterPro:IPR025260 Pfam:PF13907 Uniprot:B6ZLK2
Length = 1719
Score = 1107 (394.7 bits), Expect = 3.0e-122, Sum P(5) = 3.0e-122
Identities = 262/643 (40%), Positives = 372/643 (57%)
Query: 613 EFLVKWVGKSNIHNSWIPESQLK---VLAKRKLENYKAK-----------------YGTT 652
++L+KW G S+IHN+W E LK V +KL+NYK K Y
Sbjct: 313 QYLIKWKGWSHIHNTWETEETLKQQNVKGMKKLDNYKKKDQETKRWLKNASPEDVEYYNC 372
Query: 653 VINICDERWKQPQ---RVISLRSSKD--GTREAFVKWTGLPYDECTWEKLDEPAL-EKYS 706
+ D+ KQ Q R+I+ + K G + + KW GLPY EC+WE D + +K+
Sbjct: 373 QQELTDDLHKQYQIVERIIAHSNQKSAAGYPDYYCKWQGLPYSECSWE--DGALIAKKFQ 430
Query: 707 HLTDLFVQFERQTLKKDASEDELPRGKGDCQQSEIVALTEQPEELKGGA---LFPHQLEA 763
D + F R K +D K Q+ VAL +QP + G L +QL
Sbjct: 431 ARIDEY--FSRNQSKTTPFKD----CKVLKQRPRFVALKKQPSYIGGHESLELRDYQLNG 484
Query: 764 LNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLSTMPNWLAE 823
LNWL W K + ILADEMGLGKT+ +F++ L+ E + P L++VPLST+ +W E
Sbjct: 485 LNWLAHSWCKGNSCILADEMGLGKTIQTISFLNYLFHEHQLYGPFLLVVPLSTLTSWQRE 544
Query: 824 FALWAPNLNVVEYHGCAKARAIIRQYEWHASDPDNLNKKTSSYKFNVLLTTYEMILADSS 883
WAP +N V Y G +R +IR +EW ++ +T KFN+LLTTYE++L D S
Sbjct: 545 IQTWAPQMNAVVYLGDITSRNMIRTHEW-------MHPQTKRLKFNILLTTYEILLKDKS 597
Query: 884 HLRGVPWEVLVVDEGHRXXXXXXXXXXXXXXXXXQHRVLLTGTPLQNNIGEMYNLLNFLQ 943
L G+ W + VDE HR HR+L+TGTPLQN++ E+++LL+F+
Sbjct: 598 FLGGLNWAFIGVDEAHRLKNDDSLLYKTLIDFKSNHRLLITGTPLQNSLKELWSLLHFIM 657
Query: 944 PASFPSLSSFEEKFNDLTTTQKVEELKKLVAPHMLRRLKKDAMQNIPPKTERMVPVELSS 1003
P F S FEE+ L K + P +LRR+KKD +++P K E+++ +E+S+
Sbjct: 658 PEKFSSWEDFEEEHGK-GREYGYASLHKELEPFLLRRVKKDVEKSLPAKVEQILRMEMSA 716
Query: 1004 IQAEYYRAMLTKNYQILRNIGKGVAQQSMLNIVMQLRKVCNHPYLI--PGTEPDSGSVEF 1061
+Q +YY+ +LT+NY+ L KG + LNI+M+L+K CNH YLI P E
Sbjct: 717 LQKQYYKWILTRNYKALSKGSKG-STSGFLNIMMELKKCCNHCYLIKPPDDNEFYNKQEA 775
Query: 1062 LHEMRIKASAKLTLLHSMLKVLYKEGHRVLIFSQMTKLLDILEDYLNIEFGPKTYERVDG 1121
L + I++S KL LL +L L + G+RVLIFSQM ++LDIL +YL P ++R+DG
Sbjct: 776 LQHL-IRSSGKLILLDKLLIRLRERGNRVLIFSQMVRMLDILAEYLKYRQFP--FQRLDG 832
Query: 1122 SVSVGDRQAAITRFNQDKSR-FVFLLSTRSCGLGINLATADTVIIYDSDFNPHADIQAMN 1180
S+ R+ A+ FN + S F FLLSTR+ GLGINLA+ADTV+I+DSD+NP D+QA
Sbjct: 833 SIKGELRKQALDHFNAEGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQA 892
Query: 1181 RAHRIGQSKRLLVYRLVVRASVEERILQLAKKKLMLDQLFVNK 1223
RAHRIGQ K++ +YRLV + SVEE IL+ AKKK++LD L + +
Sbjct: 893 RAHRIGQKKQVNIYRLVTKGSVEEDILERAKKKMVLDHLVIQR 935
Score = 59 (25.8 bits), Expect = 3.0e-122, Sum P(5) = 3.0e-122
Identities = 14/50 (28%), Positives = 28/50 (56%)
Query: 1226 SQKEVEDILRWGTEELFNDSPGINGKDMGENNTSIEEAVRDLEQKHRKRG 1275
+++E+ IL++G EELF + P G++ I+E ++ E + + G
Sbjct: 957 NKEELSAILKFGAEELFKE-P--EGEEQEPQEMDIDEILKRAETRENEPG 1003
Score = 56 (24.8 bits), Expect = 3.2e-118, Sum P(3) = 3.2e-118
Identities = 43/171 (25%), Positives = 68/171 (39%)
Query: 148 SQSGVKSS--GADKVSQIFGNSILAR-KRSNKGKSVLALGVKSLEKSLDSSQVDVSCSTK 204
SQSG S G++ SQ S +R K+ + K A G + + S V S K
Sbjct: 44 SQSGSSDSESGSESGSQSESESDTSREKKQVQAKPPKADGSEFWKSSPSILAVQRSAVLK 103
Query: 205 PENTSAGVPVEGSSSCPNDDDEKQLNASPTDSLADTKF--HPAEE-VLPHSQVTKSEQND 261
+ SS +++D S DS ++TK H E+ + S +D
Sbjct: 104 KQQQQQKA---ASSDSGSEEDSSSSEDSADDSSSETKKKKHKDEDWQMSGSGSVSGTGSD 160
Query: 262 EVPVEKHEKSSTNGS-SGIKFVLAIGASERDRKRKPEV-KDEDSQKKLRVD 310
E +KSS S S + + + + + KP+ K QKK ++D
Sbjct: 161 SESEEDGDKSSCEESESDYEPKNKVKSRKPPSRIKPKSGKKSTGQKKRQLD 211
Score = 50 (22.7 bits), Expect = 3.0e-122, Sum P(5) = 3.0e-122
Identities = 14/58 (24%), Positives = 30/58 (51%)
Query: 5 SSSTSTMINRNWVLKRKRRKLPCGPGLSNGKEENLVTSESPRNTPSAKRRLKNEINAD 62
SS + + R+ VLK+++++ +G EE+ +SE + S++ + K + D
Sbjct: 89 SSPSILAVQRSAVLKKQQQQQKAASS-DSGSEEDSSSSEDSADDSSSETKKKKHKDED 145
Score = 46 (21.3 bits), Expect = 1.8e-119, Sum P(4) = 1.8e-119
Identities = 31/123 (25%), Positives = 49/123 (39%)
Query: 526 AVNGKVQDESAVSTEDLGERNDKMVVEDADVSLRDNEGLTVSEIHITCESTDKDVDVGKK 585
AV K Q + ++ D G D ED S D+ T + H KD D
Sbjct: 100 AVLKKQQQQQKAASSDSGSEEDSSSSED---SADDSSSETKKKKH-------KDEDWQMS 149
Query: 586 TSGSVAKRVQEPAVTESAQVKGKAVSYEFLVKWVGKSNIHNSWIPESQLKVLAKRKLENY 645
SGSV+ + +ES + K+ E + K+ + S P S++K + +K
Sbjct: 150 GSGSVSGTGSD---SESEEDGDKSSCEESESDYEPKNKV-KSRKPPSRIKPKSGKKSTGQ 205
Query: 646 KAK 648
K +
Sbjct: 206 KKR 208
Score = 40 (19.1 bits), Expect = 3.0e-122, Sum P(5) = 3.0e-122
Identities = 11/60 (18%), Positives = 24/60 (40%)
Query: 214 VEGSSSCPNDDDEKQLNASPTDSLADTKFHPAEEVLPHSQVTKSEQNDEVPVEKHEKSST 273
++ S +DD++ S + + + AEE S ++VP + ++ T
Sbjct: 210 LDSSEEEEDDDEDYDKRGSRRQATVNVSYKEAEETKTDSDDLLEVCGEDVPQTEEDEFET 269
Score = 40 (19.1 bits), Expect = 1.8e-119, Sum P(4) = 1.8e-119
Identities = 13/43 (30%), Positives = 21/43 (48%)
Query: 200 SCSTKPENTSAGVPVEGSSSCPNDDDEKQ--LNASPTDSLADT 240
S S +S+G +GSSS D + + S ++S +DT
Sbjct: 25 SASGSGSGSSSGSSSDGSSSQSGSSDSESGSESGSQSESESDT 67
Score = 38 (18.4 bits), Expect = 3.0e-122, Sum P(5) = 3.0e-122
Identities = 12/41 (29%), Positives = 19/41 (46%)
Query: 119 CTQKNDQLKPISNLDSISKRARSKIITIKSQSGVKSSGADK 159
C + +P + + S +R IK +SG KS+G K
Sbjct: 172 CEESESDYEPKNKVKSRKPPSR-----IKPKSGKKSTGQKK 207
>UNIPROTKB|Q9P2D1 [details] [associations]
symbol:CHD7 "Chromodomain-helicase-DNA-binding protein 7"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0016568 "chromatin modification" evidence=IEA]
[GO:0007512 "adult heart development" evidence=IEA] [GO:0007605
"sensory perception of sound" evidence=IEA] [GO:0007628 "adult
walking behavior" evidence=IEA] [GO:0008015 "blood circulation"
evidence=IEA] [GO:0030540 "female genitalia development"
evidence=IEA] [GO:0035116 "embryonic hindlimb morphogenesis"
evidence=IEA] [GO:0040018 "positive regulation of multicellular
organism growth" evidence=IEA] [GO:0048752 "semicircular canal
morphogenesis" evidence=IEA] [GO:0048844 "artery morphogenesis"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA;TAS] [GO:0005515
"protein binding" evidence=IPI] [GO:0001701 "in utero embryonic
development" evidence=IMP] [GO:0003007 "heart morphogenesis"
evidence=IMP] [GO:0042472 "inner ear morphogenesis" evidence=IMP]
[GO:0043584 "nose development" evidence=IMP] [GO:0048806 "genitalia
development" evidence=IMP] [GO:0060021 "palate development"
evidence=IMP] [GO:0060041 "retina development in camera-type eye"
evidence=IMP] [GO:0001501 "skeletal system development"
evidence=IMP] [GO:0050890 "cognition" evidence=IMP] [GO:0007417
"central nervous system development" evidence=IMP] [GO:0021545
"cranial nerve development" evidence=IMP] [GO:0060123 "regulation
of growth hormone secretion" evidence=IMP] [GO:0003682 "chromatin
binding" evidence=TAS] [GO:0030217 "T cell differentiation"
evidence=IMP] [GO:0060173 "limb development" evidence=IMP]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=NAS] [GO:0060324 "face development" evidence=IMP]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271
Pfam:PF07533 PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 SMART:SM00592 SMART:SM00717
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0003677 GO:GO:0008015 GO:GO:0003007 GO:GO:0050890
GO:GO:0001701 GO:GO:0040018 GO:GO:0007417 GO:GO:0006351
GO:GO:0003682 GO:GO:0016568 GO:GO:0048806 GO:GO:0042472
GO:GO:0001501 GO:GO:0060041 GO:GO:0007605 GO:GO:0007512
GO:GO:0004386 GO:GO:0035116 GO:GO:0060324 GO:GO:0060021
GO:GO:0060173 GO:GO:0048844 InterPro:IPR016197 SUPFAM:SSF54160
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0030540 GO:GO:0007628 GO:GO:0030217 GO:GO:0048752
InterPro:IPR023780 PROSITE:PS00598 HOVERGEN:HBG081150 CTD:55636
KO:K14437 OrthoDB:EOG4MCWZD EMBL:AC023102 EMBL:AC113143
EMBL:AB037837 EMBL:AK000364 EMBL:AK000368 EMBL:BC014681
EMBL:BC051264 EMBL:BC053890 EMBL:BC068000 EMBL:BC080627
EMBL:BC110818 IPI:IPI00472901 IPI:IPI00794880 RefSeq:NP_060250.2
UniGene:Hs.20395 UniGene:Hs.733236 PDB:2CKC PDB:2V0E PDB:2V0F
PDBsum:2CKC PDBsum:2V0E PDBsum:2V0F ProteinModelPortal:Q9P2D1
SMR:Q9P2D1 DIP:DIP-48685N IntAct:Q9P2D1 STRING:Q9P2D1
PhosphoSite:Q9P2D1 DMDM:148877246 PaxDb:Q9P2D1 PRIDE:Q9P2D1
Ensembl:ENST00000307121 Ensembl:ENST00000423902
Ensembl:ENST00000525508 GeneID:55636 KEGG:hsa:55636 UCSC:uc003xue.3
GeneCards:GC08P061642 H-InvDB:HIX0007533 HGNC:HGNC:20626 MIM:214800
MIM:608765 MIM:608892 MIM:612370 neXtProt:NX_Q9P2D1 Orphanet:138
Orphanet:478 Orphanet:432 PharmGKB:PA134948695 InParanoid:Q9P2D1
OMA:TFGVIFD EvolutionaryTrace:Q9P2D1 GenomeRNAi:55636 NextBio:60291
ArrayExpress:Q9P2D1 Bgee:Q9P2D1 CleanEx:HS_CHD7
Genevestigator:Q9P2D1 GermOnline:ENSG00000171316 GO:GO:0021545
GO:GO:0043584 GO:GO:0060123 Uniprot:Q9P2D1
Length = 2997
Score = 1177 (419.4 bits), Expect = 3.0e-122, Sum P(5) = 3.0e-122
Identities = 296/781 (37%), Positives = 425/781 (54%)
Query: 517 EDDKDSDPVAVNGKVQDESAVSTEDLGERNDKMVVEDADVSLRDNEGLTV-SEIHITCES 575
E+D+D Q + TEDL + +DAD + RD+ T SE ES
Sbjct: 738 EEDEDPGVQKRRSSRQVKRKRYTEDLEFKISDEEADDADAAGRDSPSNTSQSEQQ---ES 794
Query: 576 TDKDVDVGKKTSGSVAKRVQEPAVTESAQVKGKAVSYEFLVKWVGKSNIHNSW--IPESQ 633
D + V +K S + + Q+ + E +++ EF VK+ S +H W I + +
Sbjct: 795 VDAEGPVVEKIMSSRSVKKQKES-GEEVEIE------EFYVKYKNFSYLHCQWASIEDLE 847
Query: 634 LKVLAKRKLENYKAKYGTT--VINICDERWK----QPQRVISLRSSKDGTREA----FVK 683
++K++ +KAK G + I DE + + R++ S D E VK
Sbjct: 848 KDKRIQQKIKRFKAKQGQNKFLSEIEDELFNPDYVEVDRIMDFARSTDDRGEPVTHYLVK 907
Query: 684 WTGLPYDECTWEKLDEPALEKYSHLTDLFVQFERQTLKKDASEDELPRGKGDCQQSEIVA 743
W LPY++ TWE+ + K +FE+ + ++ + + R D +
Sbjct: 908 WCSLPYEDSTWERRQDIDQAKIE-------EFEK-LMSREPETERVERPPADDWKK---- 955
Query: 744 LTEQPEELKGG-ALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEF 802
+E E K L +QLE +NWL W+ +N ILADEMGLGKT+ + F+ +Y +
Sbjct: 956 -SESSREYKNNNKLREYQLEGVNWLLFNWYNMRNCILADEMGLGKTIQSITFLYEIYLK- 1013
Query: 803 KAKLPCLVLVPLSTMPNWLAEFALWAPNLNVVEYHGCAKARAIIRQYEWHASDPDNLNKK 862
P LV+ PLST+PNW EF W LNVV YHG +R I+ YE + DP K
Sbjct: 1014 GIHGPFLVIAPLSTIPNWEREFRTWT-ELNVVVYHGSQASRRTIQLYEMYFKDPQGRVIK 1072
Query: 863 TSSYKFNVLLTTYEMILADSSHLRGVPWEVLVVDEGHRXXXXXXXXXXXXXXXXXQHRVL 922
SYKF+ ++TT+EMIL D LR +PW +V+DE HR +H+VL
Sbjct: 1073 -GSYKFHAIITTFEMILTDCPELRNIPWRCVVIDEAHRLKNRNCKLLEGLKMMDLEHKVL 1131
Query: 923 LTGTPLQNNIGEMYNLLNFLQPASFPSLSSFEEKFNDLTTTQKVEELKKLVAPHMLRRLK 982
LTGTPLQN + E+++LL+FL+P+ FPS ++F ++F DL T ++V++L+ ++ P MLRRLK
Sbjct: 1132 LTGTPLQNTVEELFSLLHFLEPSRFPSETTFMQEFGDLKTEEQVQKLQAILKPMMLRRLK 1191
Query: 983 KDAMQNIPPKTERMVPVELSSIQAEYYRAMLTKNYQILRNIGKGVAQQSMLNIVMQLRKV 1042
+D +N+ PK E ++ VEL++IQ +YYRA+L KN+ L G ++LN +M+LRK
Sbjct: 1192 EDVEKNLAPKEETIIEVELTNIQKKYYRAILEKNFTFLSKGGGQANVPNLLNTMMELRKC 1251
Query: 1043 CNHPYLIPGTEP----------DSGSVEFLHEMRIKASAKLTLLHSMLKVLYKEGHRVLI 1092
CNHPYLI G E ++ S +F + I+A+ KL L+ +L L GHRVLI
Sbjct: 1252 CNHPYLINGAEEKILEEFKETHNAESPDFQLQAMIQAAGKLVLIDKLLPKLKAGGHRVLI 1311
Query: 1093 FSQMTKLLDILEDYLNIEFGPKTYERVDGSVSVGDRQAAITRFNQ-DKSRFVFLLSTRSC 1151
FSQM + LDILEDYL P YER+DG V RQAAI RF++ D RFVFLL TR+
Sbjct: 1312 FSQMVRCLDILEDYLIQRRYP--YERIDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAG 1369
Query: 1152 GLGINLATADTVIIYDSDFNPHADIQAMNRAHRIGQSKRLLVYRLVVRASVEERILQLAK 1211
GLGINL ADT II+DSD+NP D+QA R HRIGQSK + +YRL+ R S E + A
Sbjct: 1370 GLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKSVKIYRLITRNSYEREMFDKAS 1429
Query: 1212 KKLMLDQLFVNK-SGSQKEVEDILRWGTEELFND--SPGINGKDMGENNTSIEEAVRDLE 1268
KL LD+ + SG + + + +E+ D G G M E + + D++
Sbjct: 1430 LKLGLDKAVLQSMSGRENATNGVQQLSKKEI-EDLLRKGAYGALMDEEDEGSKFCEEDID 1488
Query: 1269 Q 1269
Q
Sbjct: 1489 Q 1489
Score = 53 (23.7 bits), Expect = 3.8e-122, Sum P(4) = 3.8e-122
Identities = 14/53 (26%), Positives = 26/53 (49%)
Query: 21 KRRKLPCGPGLSNGKEENLVTSESPRNTPSAKRRLKNEINADRSSTKKKGNDG 73
K K P P + +E + +P+ S+K+ + +++ S+ KKK N G
Sbjct: 666 KEPKTPKAPKIPKEPKEKKAKTATPK-PKSSKKSSNKKPDSEASALKKKVNKG 717
Score = 40 (19.1 bits), Expect = 3.0e-122, Sum P(5) = 3.0e-122
Identities = 12/43 (27%), Positives = 22/43 (51%)
Query: 117 PKCTQKNDQLKPISNLDSISKRARSKIITIKSQSGVKSSGADK 159
PK ++K+ KP S ++ K+ K++ G ++S DK
Sbjct: 692 PKSSKKSSNKKPDSEASALKKKVNKG----KTE-GSENSDLDK 729
Score = 39 (18.8 bits), Expect = 3.0e-122, Sum P(5) = 3.0e-122
Identities = 10/37 (27%), Positives = 14/37 (37%)
Query: 1337 ETTEDQAESPVAAVDDASAENSERKEENAVTGIEENE 1373
E E + E P E E +EE +G E +
Sbjct: 2169 EQAEGKVEEPENPAAKEKCEGKEEEEETDGSGKESKQ 2205
Score = 39 (18.8 bits), Expect = 3.0e-122, Sum P(5) = 3.0e-122
Identities = 10/39 (25%), Positives = 21/39 (53%)
Query: 1288 EGSTKIVWDENAIARLLDRSNLQSGSTDLAEGDLENDML 1326
+ S K+ D+ + + R N +G L++ ++E D+L
Sbjct: 1427 KASLKLGLDKAVLQSMSGRENATNGVQQLSKKEIE-DLL 1464
Score = 37 (18.1 bits), Expect = 3.0e-122, Sum P(5) = 3.0e-122
Identities = 6/15 (40%), Positives = 10/15 (66%)
Query: 98 HLQCLDPPLKRIPNG 112
H Q PP+ ++P+G
Sbjct: 102 HSQYHTPPVPQVPHG 116
Score = 37 (18.1 bits), Expect = 1.5e-120, Sum P(3) = 1.5e-120
Identities = 17/94 (18%), Positives = 40/94 (42%)
Query: 1250 GKDMGENNTSIEEAVRDLEQKHRKRGGGLGDVYQDKCTEGSTKIVWDENAIARLLDRSNL 1309
GK N + +E E++ G G + +C ++ + +N + +
Sbjct: 2173 GKVEEPENPAAKEKCEGKEEEEETDGSGKES--KQECEAEASSV---KNELKGV--EVGA 2225
Query: 1310 QSGSTDLAEGDLENDMLGSVKATEWNEETTEDQA 1343
+GS ++E E D ++ + +EE+++ +A
Sbjct: 2226 DTGSKSISEKGSEEDEEEKLEDDDKSEESSQPEA 2259
>MGI|MGI:88393 [details] [associations]
symbol:Chd1 "chromodomain helicase DNA binding protein 1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003682 "chromatin
binding" evidence=NAS] [GO:0004386 "helicase activity"
evidence=NAS] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=NAS] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0006333 "chromatin assembly or disassembly" evidence=NAS]
[GO:0006338 "chromatin remodeling" evidence=IGI] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0016568 "chromatin modification" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0035064 "methylated histone
residue binding" evidence=ISO] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298
SMART:SM00490 MGI:MGI:88393 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0006355 GO:GO:0003677
GO:GO:0006351 GO:GO:0003682 GO:GO:0006338 GO:GO:0006333
GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
InterPro:IPR023779 PROSITE:PS00598 HOVERGEN:HBG005325
InterPro:IPR025260 Pfam:PF13907 CTD:1105
GeneTree:ENSGT00560000076896 KO:K11367 HOGENOM:HOG000207917
OMA:AETHENE OrthoDB:EOG4PG601 EMBL:L10410 EMBL:CH466630
EMBL:BC115822 IPI:IPI00107999 PIR:A47392 RefSeq:NP_031716.2
UniGene:Mm.8137 ProteinModelPortal:P40201 SMR:P40201 IntAct:P40201
STRING:P40201 PhosphoSite:P40201 PaxDb:P40201 PRIDE:P40201
Ensembl:ENSMUST00000024627 GeneID:12648 KEGG:mmu:12648
InParanoid:Q14BJ0 NextBio:281852 Bgee:P40201 CleanEx:MM_CHD1
Genevestigator:P40201 GermOnline:ENSMUSG00000023852 Uniprot:P40201
Length = 1711
Score = 1110 (395.8 bits), Expect = 5.6e-122, Sum P(4) = 5.6e-122
Identities = 285/743 (38%), Positives = 407/743 (54%)
Query: 517 EDDKDSDPVAVNGKVQDESAVS-TED---LGERNDKMVVEDADVSLRDNEGLTVSEIHIT 572
EDD+D D + + Q VS ED + +D + V DV ++E E +
Sbjct: 218 EDDEDYDNDKRSSRRQATVNVSYKEDEEMKTDSDDLLEVCGEDVPQPEDEEFETIERVMD 277
Query: 573 CESTDKDVDVGKKTSGSVAKRVQEP-AVTESAQVKGKAVSYEFLVKWVGKSNIHNSWIPE 631
C K G T+ + +P A E + G ++L+KW G S+IHN+W E
Sbjct: 278 CRVGRKGA-TGATTTIYAVEADGDPNAGFERNKEPG---DIQYLIKWKGWSHIHNTWETE 333
Query: 632 SQLK---VLAKRKLENYKAK-----------------YGTTVINICDERWKQPQ---RVI 668
LK V +KL+NYK K Y + D+ KQ Q R+I
Sbjct: 334 ETLKQQNVRGMKKLDNYKKKDQETKRWLKNASPEDVEYYNCQQELTDDLHKQYQIVERII 393
Query: 669 SLRSSKD--GTREAFVKWTGLPYDECTWEKLDEPALEKYSHLTDLFVQFERQTLKKDASE 726
+ + K G + + KW GLPY EC+WE + AL T + F R K +
Sbjct: 394 AHSNQKSAAGLPDYYCKWQGLPYSECSWE---DGALISKKFQTCIDEYFSRNQSKTTPFK 450
Query: 727 DELPRGKGDCQQSEIVALTEQPEELKG--GA-LFPHQLEALNWLRKCWHKSKNVILADEM 783
D K Q+ VAL +QP + G G L +QL LNWL W K + ILADEM
Sbjct: 451 D----CKVLKQRPRFVALKKQPSYIGGHEGLELRDYQLNGLNWLAHSWCKGNSCILADEM 506
Query: 784 GLGKTVSACAFISSLYCEFKAKLPCLVLVPLSTMPNWLAEFALWAPNLNVVEYHGCAKAR 843
GLGKT+ +F++ L+ E + P L++VPLST+ +W E WA +N V Y G +R
Sbjct: 507 GLGKTIQTISFLNYLFHEHQLYGPFLLVVPLSTLTSWQREIQTWASQMNAVVYLGDINSR 566
Query: 844 AIIRQYEWHASDPDNLNKKTSSYKFNVLLTTYEMILADSSHLRGVPWEVLVVDEGHRXXX 903
+IR +EW ++ +T KFN+LLTTYE++L D + L G+ W + VDE HR
Sbjct: 567 NMIRTHEW-------MHPQTKRLKFNILLTTYEILLKDKAFLGGLNWAFIGVDEAHRLKN 619
Query: 904 XXXXXXXXXXXXXXQHRVLLTGTPLQNNIGEMYNLLNFLQPASFPSLSSFEEKFNDLTTT 963
HR+L+TGTPLQN++ E+++LL+F+ P F S FEE+
Sbjct: 620 DDSLLYKTLIDFKSNHRLLITGTPLQNSLKELWSLLHFIMPEKFSSWEDFEEEHGK-GRE 678
Query: 964 QKVEELKKLVAPHMLRRLKKDAMQNIPPKTERMVPVELSSIQAEYYRAMLTKNYQILRNI 1023
L K + P +LRR+KKD +++P K E+++ +E+S++Q +YY+ +LT+NY+ L
Sbjct: 679 YGYASLHKELEPFLLRRVKKDVEKSLPAKVEQILRMEMSALQKQYYKWILTRNYKALSKG 738
Query: 1024 GKGVAQQSMLNIVMQLRKVCNHPYLI--PGTEPDSGSVEFLHEMRIKASAKLTLLHSMLK 1081
KG + LNI+M+L+K CNH YLI P E L + I++S KL LL +L
Sbjct: 739 SKG-STSGFLNIMMELKKCCNHCYLIKPPDNNEFYNKQEALQHL-IRSSGKLILLDKLLI 796
Query: 1082 VLYKEGHRVLIFSQMTKLLDILEDYLNIEFGPKTYERVDGSVSVGDRQAAITRFNQDKSR 1141
L + G+RVLIFSQM ++LDIL +YL P ++R+DGS+ R+ A+ FN + S
Sbjct: 797 RLRERGNRVLIFSQMVRMLDILAEYLKYRQFP--FQRLDGSIKGELRKQALDHFNAEGSE 854
Query: 1142 -FVFLLSTRSCGLGINLATADTVIIYDSDFNPHADIQAMNRAHRIGQSKRLLVYRLVVRA 1200
F FLLSTR+ GLGINLA+ADTV+I+DSD+NP D+QA RAHRIGQ K++ +YRLV +
Sbjct: 855 DFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKG 914
Query: 1201 SVEERILQLAKKKLMLDQLFVNK 1223
SVEE IL+ AKKK++LD L + +
Sbjct: 915 SVEEDILERAKKKMVLDHLVIQR 937
Score = 67 (28.6 bits), Expect = 1.2e-119, Sum P(3) = 1.2e-119
Identities = 37/164 (22%), Positives = 62/164 (37%)
Query: 148 SQSGVKSS--GADKVSQIFGNSILARKRSNKGKSVLALGVKSLEKSLDSSQVDVSCSTK- 204
SQSG S G+D SQ S +R+ + K G + + S V S +
Sbjct: 45 SQSGSSDSDSGSDSGSQSESESDTSRENKVQAKPPKVDGAEFWKSSPSILAVQRSAMLRK 104
Query: 205 -PENTSAGVPVEGSSSCPNDDDEKQLNASPTDSLADTKFHPAEEVLPHSQVTKSEQ-NDE 262
P+ P +S D + ++ + S A K H E+ + S+ +D
Sbjct: 105 QPQQAQQQRPASSNSGSEEDSSSSE-DSDDSSSGAKRKKHNDEDWQMSGSGSPSQSGSDS 163
Query: 263 VPVEKHEKSSTNGSSGIKFVLAIGASERDRKRKPEVKDEDSQKK 306
E+ +KSS +G+ + R RKP+ + + K
Sbjct: 164 ESEEERDKSSCDGTES-----DYEPKNKVRSRKPQNRSKSKNGK 202
Score = 58 (25.5 bits), Expect = 5.6e-122, Sum P(4) = 5.6e-122
Identities = 16/56 (28%), Positives = 30/56 (53%)
Query: 1226 SQKEVEDILRWGTEELFNDSPGINGKDMGENNTSIEEAVRDLEQKHRKRGG-GLGD 1280
+++E+ IL++G EELF + P G++ I+E ++ E + G +GD
Sbjct: 959 NKEELSAILKFGAEELFKE-P--EGEEQEPQEMDIDEILKRAETHENEPGPLSVGD 1011
Score = 58 (25.5 bits), Expect = 5.6e-122, Sum P(4) = 5.6e-122
Identities = 28/123 (22%), Positives = 44/123 (35%)
Query: 130 SNLDSISKRARSKIITIKSQSGVKSSGADKVSQIFGNSILARKRSNKGKSVLALGVKSLE 189
S DS S+ R K S G +S K +++ R +S GK +L + ++
Sbjct: 159 SGSDSESEEERDK----SSCDGTESDYEPK-NKVRSRKPQNRSKSKNGKKILGQKKRQID 213
Query: 190 KSLDSSQVDVSCSTKPENTSAGVPV---EGSSSCPNDDDEKQLNASPTDSLADTKFHPAE 246
S D D + A V V E + DD ++ D +F E
Sbjct: 214 SSEDEDDEDYDNDKRSSRRQATVNVSYKEDEEMKTDSDDLLEVCGEDVPQPEDEEFETIE 273
Query: 247 EVL 249
V+
Sbjct: 274 RVM 276
Score = 49 (22.3 bits), Expect = 5.6e-122, Sum P(4) = 5.6e-122
Identities = 21/74 (28%), Positives = 39/74 (52%)
Query: 5 SSSTSTMINRNWVLKRKRRKLPCG-PGLSN-GKEENLVTSESPRNTPS-AKRRLKNEINA 61
SS + + R+ +L+++ ++ P SN G EE+ +SE ++ S AKR+ N+ +
Sbjct: 89 SSPSILAVQRSAMLRKQPQQAQQQRPASSNSGSEEDSSSSEDSDDSSSGAKRKKHNDEDW 148
Query: 62 DRS---STKKKGND 72
S S + G+D
Sbjct: 149 QMSGSGSPSQSGSD 162
Score = 44 (20.5 bits), Expect = 3.0e-117, Sum P(3) = 3.0e-117
Identities = 17/53 (32%), Positives = 26/53 (49%)
Query: 193 DSSQVDVSC---STKPENTSAGVPVEGSSSCP--NDDDEKQLNASPTDSLADT 240
+SSQ C S +S+G +GSSS +D D + S ++S +DT
Sbjct: 16 ESSQSGDDCGSASGSGSGSSSGSSSDGSSSQSGSSDSDSGSDSGSQSESESDT 68
Score = 42 (19.8 bits), Expect = 4.9e-117, Sum P(3) = 4.9e-117
Identities = 12/58 (20%), Positives = 28/58 (48%)
Query: 19 KRKRRKLPCGPGLSNGKEENLVTSESPRNTPSAK--RRLKNEINADRSSTKKKGNDGY 74
+ +R K C S+ + +N V S P+N +K +++ + S++ + ++ Y
Sbjct: 166 EEERDKSSCDGTESDYEPKNKVRSRKPQNRSKSKNGKKILGQKKRQIDSSEDEDDEDY 223
Score = 39 (18.8 bits), Expect = 1.0e-116, Sum P(3) = 1.0e-116
Identities = 13/52 (25%), Positives = 25/52 (48%)
Query: 189 EKSLDSSQVDVSCSTKPENTSAGVPVEGSSSCPNDDDEKQLNASPTDSLADT 240
E+S+ + + S S +++G SS +D Q +S +DS +D+
Sbjct: 7 EESVRNGSGESSQSGDDCGSASGSGSGSSSGSSSDGSSSQSGSSDSDSGSDS 58
>MGI|MGI:2444748 [details] [associations]
symbol:Chd7 "chromodomain helicase DNA binding protein 7"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0001501 "skeletal system development"
evidence=ISO] [GO:0001568 "blood vessel development" evidence=IMP]
[GO:0001701 "in utero embryonic development" evidence=ISO;IMP]
[GO:0003007 "heart morphogenesis" evidence=ISO;IMP] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0007417 "central
nervous system development" evidence=ISO] [GO:0007512 "adult heart
development" evidence=IMP] [GO:0007605 "sensory perception of
sound" evidence=IMP] [GO:0007626 "locomotory behavior"
evidence=IMP] [GO:0007628 "adult walking behavior" evidence=IMP]
[GO:0008015 "blood circulation" evidence=IMP] [GO:0016568
"chromatin modification" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0016817 "hydrolase activity, acting on
acid anhydrides" evidence=IEA] [GO:0021545 "cranial nerve
development" evidence=ISO] [GO:0030217 "T cell differentiation"
evidence=ISO] [GO:0030540 "female genitalia development"
evidence=IMP] [GO:0035116 "embryonic hindlimb morphogenesis"
evidence=IMP] [GO:0040018 "positive regulation of multicellular
organism growth" evidence=IMP] [GO:0042471 "ear morphogenesis"
evidence=IMP] [GO:0042472 "inner ear morphogenesis"
evidence=ISO;IMP] [GO:0043010 "camera-type eye development"
evidence=IMP] [GO:0043584 "nose development" evidence=ISO;IMP]
[GO:0048752 "semicircular canal morphogenesis" evidence=IGI]
[GO:0048806 "genitalia development" evidence=ISO] [GO:0048844
"artery morphogenesis" evidence=IGI] [GO:0050890 "cognition"
evidence=ISO] [GO:0060021 "palate development" evidence=ISO;IMP]
[GO:0060041 "retina development in camera-type eye" evidence=ISO]
[GO:0060123 "regulation of growth hormone secretion" evidence=ISO]
[GO:0060173 "limb development" evidence=ISO] [GO:0060324 "face
development" evidence=ISO] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR006576
Pfam:PF00176 Pfam:PF00271 Pfam:PF07533 PROSITE:PS00690
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
SMART:SM00592 SMART:SM00717 MGI:MGI:2444748 Pfam:PF00385
GO:GO:0005524 GO:GO:0005634 GO:GO:0006355 GO:GO:0003677
GO:GO:0008015 GO:GO:0003007 GO:GO:0050890 GO:GO:0001701
GO:GO:0040018 GO:GO:0007417 GO:GO:0006351 GO:GO:0003682
GO:GO:0016568 GO:GO:0043010 GO:GO:0001501 GO:GO:0060041
GO:GO:0007605 GO:GO:0007512 GO:GO:0004386 GO:GO:0035116
GO:GO:0060324 GO:GO:0060021 GO:GO:0048844 InterPro:IPR016197
SUPFAM:SSF54160 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0030540 GO:GO:0007628 GO:GO:0030217
GO:GO:0048752 InterPro:IPR023780 PROSITE:PS00598 HOVERGEN:HBG081150
CTD:55636 HOGENOM:HOG000246942 KO:K14437 OrthoDB:EOG4MCWZD
OMA:TFGVIFD GO:GO:0021545 GO:GO:0043584 GO:GO:0060123 EMBL:AK042727
EMBL:AK171051 EMBL:AK171857 EMBL:AK172025 EMBL:AL732627
EMBL:AL805903 EMBL:BC034239 IPI:IPI00345676 IPI:IPI00666779
IPI:IPI00849588 RefSeq:NP_001074886.1 UniGene:Mm.138792
ProteinModelPortal:A2AJK6 SMR:A2AJK6 IntAct:A2AJK6 STRING:A2AJK6
PhosphoSite:A2AJK6 PaxDb:A2AJK6 PRIDE:A2AJK6
Ensembl:ENSMUST00000039267 Ensembl:ENSMUST00000051558
Ensembl:ENSMUST00000127476 GeneID:320790 KEGG:mmu:320790
UCSC:uc008rxy.1 UCSC:uc008rya.1 GeneTree:ENSGT00560000077077
InParanoid:A2AJK6 NextBio:397435 Bgee:A2AJK6 CleanEx:MM_CHD7
Genevestigator:A2AJK6 Uniprot:A2AJK6
Length = 2986
Score = 1170 (416.9 bits), Expect = 6.2e-122, Sum P(4) = 6.2e-122
Identities = 294/782 (37%), Positives = 425/782 (54%)
Query: 517 EDDKDSDPVAVNGKVQDESAVSTEDLGERNDKMVVEDADVSLRDNEGLTV-SEIHITCES 575
E+D+D Q + TEDL + +DAD + RD+ T SE ES
Sbjct: 728 EEDEDPGVQKRRSSRQVKRKRYTEDLEFKISDEEADDADAAGRDSPSNTSQSEQQ---ES 784
Query: 576 TDKDVDVGKKTSGSVAKRVQEPAVTESAQVKGKAVSYE-FLVKWVGKSNIHNSWIPESQL 634
D + G V +++ + + + G+ V E F VK+ S +H W L
Sbjct: 785 VDAE--------GPVVEKIMSSRLVKKQKESGEEVEVEEFYVKYKNFSYLHCQWASVEDL 836
Query: 635 KV--LAKRKLENYKAKYGTT--VINICDERWK----QPQRVISLRSSKDGTREA----FV 682
+ ++K++ +K+K G + + I D+ + + R++ S D E V
Sbjct: 837 EKDKRIQQKIKRFKSKQGQSKFLSEIEDDLFNPDYVEVDRIMDFARSTDDRGEPVIHYLV 896
Query: 683 KWTGLPYDECTWEKLDEPALEKYSHLTDLFVQFERQTLKKDASEDELPRGKGDCQQSEIV 742
KW LPY++ TWE L++ T + +FE+ + ++ + + R D +
Sbjct: 897 KWCSLPYEDSTWE------LKQDIDQTKI-EEFEK-LMSREPETERVERPPADDWKK--- 945
Query: 743 ALTEQPEELKGG-ALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCE 801
+E E K L +QLE +NWL W+ +N ILADEMGLGKT+ + F+ +Y +
Sbjct: 946 --SESSREYKNNNKLREYQLEGVNWLLFNWYNMRNCILADEMGLGKTIQSITFLYEIYLK 1003
Query: 802 FKAKLPCLVLVPLSTMPNWLAEFALWAPNLNVVEYHGCAKARAIIRQYEWHASDPDNLNK 861
P LV+ PLST+PNW EF W LNVV YHG +R I+ YE + DP
Sbjct: 1004 -GIHGPFLVIAPLSTIPNWEREFRTWT-ELNVVVYHGSQASRRTIQLYEMYFKDPQGRVI 1061
Query: 862 KTSSYKFNVLLTTYEMILADSSHLRGVPWEVLVVDEGHRXXXXXXXXXXXXXXXXXQHRV 921
K SYKF+ ++TT+EMIL D LR +PW +V+DE HR +H+V
Sbjct: 1062 K-GSYKFHAIITTFEMILTDCPELRNIPWRCVVIDEAHRLKNRNCKLLEGLKMMDLEHKV 1120
Query: 922 LLTGTPLQNNIGEMYNLLNFLQPASFPSLSSFEEKFNDLTTTQKVEELKKLVAPHMLRRL 981
LLTGTPLQN + E+++LL+FL+P+ FPS ++F ++F DL T ++V++L+ ++ P MLRRL
Sbjct: 1121 LLTGTPLQNTVEELFSLLHFLEPSRFPSETTFMQEFGDLKTEEQVQKLQAILKPMMLRRL 1180
Query: 982 KKDAMQNIPPKTERMVPVELSSIQAEYYRAMLTKNYQILRNIGKGVAQQSMLNIVMQLRK 1041
K+D +N+ PK E ++ VEL++IQ +YYRA+L KN+ L G ++LN +M+LRK
Sbjct: 1181 KEDVEKNLAPKEETIIEVELTNIQKKYYRAILEKNFTFLSKGGGQANVPNLLNTMMELRK 1240
Query: 1042 VCNHPYLIPGTEP----------DSGSVEFLHEMRIKASAKLTLLHSMLKVLYKEGHRVL 1091
CNHPYLI G E ++ S +F + I+A+ KL L+ +L L GHRVL
Sbjct: 1241 CCNHPYLINGAEEKILEEFKETHNAESPDFQLQAMIQAAGKLVLIDKLLPKLKAGGHRVL 1300
Query: 1092 IFSQMTKLLDILEDYLNIEFGPKTYERVDGSVSVGDRQAAITRFNQ-DKSRFVFLLSTRS 1150
IFSQM + LDILEDYL P YER+DG V RQAAI RF++ D RFVFLL TR+
Sbjct: 1301 IFSQMVRCLDILEDYLIQRRYP--YERIDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRA 1358
Query: 1151 CGLGINLATADTVIIYDSDFNPHADIQAMNRAHRIGQSKRLLVYRLVVRASVEERILQLA 1210
GLGINL ADT II+DSD+NP D+QA R HRIGQSK + +YRL+ R S E + A
Sbjct: 1359 GGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKSVKIYRLITRNSYEREMFDKA 1418
Query: 1211 KKKLMLDQLFVNK-SGSQKEVEDILRWGTEELFND--SPGINGKDMGENNTSIEEAVRDL 1267
KL LD+ + SG + + + +E+ D G G M E + + D+
Sbjct: 1419 SLKLGLDKAVLQSMSGRENATNGVQQLSKKEI-EDLLRKGAYGALMDEEDEGSKFCEEDI 1477
Query: 1268 EQ 1269
+Q
Sbjct: 1478 DQ 1479
Score = 60 (26.2 bits), Expect = 6.2e-122, Sum P(4) = 6.2e-122
Identities = 27/115 (23%), Positives = 50/115 (43%)
Query: 205 PENTSAGVPV-EGSSSCPNDD----DEKQLNASPTDSLADTKFHPAEEVLPHSQVTKSEQ 259
P+NT VPV + S S P + D Q++A + + P+ E P Q K ++
Sbjct: 537 PQNTPQKVPVHQHSPSEPFLEKPVPDMTQVSAQNAQLVKSDDYLPSIEQQPQ-QKKKKKK 595
Query: 260 NDEVPVEKHEKS--STNGSSGI------KFVLAIGASERDRKRKPEVKDEDSQKK 306
N+ + K + G+ + L + E+ +K++P+VK + + K
Sbjct: 596 NNHIAAGDSSKGFGKDDFPGGVENQELRRNSLDVSQEEKKKKKRPKVKKDPKESK 650
Score = 58 (25.5 bits), Expect = 1.0e-121, Sum P(4) = 1.0e-121
Identities = 42/164 (25%), Positives = 64/164 (39%)
Query: 104 PPLKRIPNGKWQCPKCTQKNDQLKPISNLDSISKRARSKIITIKSQSGVKSSGADKVSQI 163
P +K+ P + PK +K + + K ++K +T K +S KSS S+
Sbjct: 640 PKVKKDPKESKE-PK-EKKEPKTPKAPKIPKEPKEKKAKTVTPKPKSSKKSSNKKPDSEA 697
Query: 164 FGNSILARKRSNKGKSVLALGVKSLEKSLDSSQVDVSCSTKPENTSAGVPVEGSS-SCPN 222
S L +K+ NKGK+ + E S D + E+ GV SS
Sbjct: 698 ---SAL-KKKVNKGKT------EGSENS-DLDKTPPPSPAPEEDEDPGVQKRRSSRQVKR 746
Query: 223 DDDEKQLNASPTDSLADTKFHPAEEVLPHSQVTKSEQNDEVPVE 266
+ L +D AD A P S ++SEQ + V E
Sbjct: 747 KRYTEDLEFKISDEEADDA-DAAGRDSP-SNTSQSEQQESVDAE 788
Score = 55 (24.4 bits), Expect = 3.1e-120, Sum P(3) = 3.1e-120
Identities = 14/55 (25%), Positives = 28/55 (50%)
Query: 19 KRKRRKLPCGPGLSNGKEENLVTSESPRNTPSAKRRLKNEINADRSSTKKKGNDG 73
++K K P P + +E + +P+ S+K+ + +++ S+ KKK N G
Sbjct: 654 EKKEPKTPKAPKIPKEPKEKKAKTVTPK-PKSSKKSSNKKPDSEASALKKKVNKG 707
Score = 39 (18.8 bits), Expect = 6.2e-122, Sum P(4) = 6.2e-122
Identities = 10/39 (25%), Positives = 21/39 (53%)
Query: 1288 EGSTKIVWDENAIARLLDRSNLQSGSTDLAEGDLENDML 1326
+ S K+ D+ + + R N +G L++ ++E D+L
Sbjct: 1417 KASLKLGLDKAVLQSMSGRENATNGVQQLSKKEIE-DLL 1454
Score = 37 (18.1 bits), Expect = 6.2e-122, Sum P(4) = 6.2e-122
Identities = 6/15 (40%), Positives = 10/15 (66%)
Query: 98 HLQCLDPPLKRIPNG 112
H Q PP+ ++P+G
Sbjct: 101 HSQYHTPPVPQVPHG 115
>RGD|1311921 [details] [associations]
symbol:Chd7 "chromodomain helicase DNA binding protein 7"
species:10116 "Rattus norvegicus" [GO:0001501 "skeletal system
development" evidence=IEA;ISO] [GO:0001568 "blood vessel
development" evidence=ISO] [GO:0001701 "in utero embryonic
development" evidence=IEA;ISO] [GO:0003007 "heart morphogenesis"
evidence=IEA;ISO] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0007417 "central
nervous system development" evidence=IEA;ISO] [GO:0007512 "adult
heart development" evidence=IEA;ISO] [GO:0007605 "sensory
perception of sound" evidence=IEA;ISO] [GO:0007626 "locomotory
behavior" evidence=ISO] [GO:0007628 "adult walking behavior"
evidence=IEA;ISO] [GO:0008015 "blood circulation" evidence=IEA;ISO]
[GO:0021545 "cranial nerve development" evidence=IEA;ISO]
[GO:0030217 "T cell differentiation" evidence=IEA;ISO] [GO:0030540
"female genitalia development" evidence=IEA;ISO] [GO:0035116
"embryonic hindlimb morphogenesis" evidence=IEA;ISO] [GO:0040018
"positive regulation of multicellular organism growth"
evidence=IEA;ISO] [GO:0042471 "ear morphogenesis" evidence=ISO]
[GO:0042472 "inner ear morphogenesis" evidence=ISO] [GO:0043010
"camera-type eye development" evidence=ISO] [GO:0043584 "nose
development" evidence=IEA;ISO] [GO:0048752 "semicircular canal
morphogenesis" evidence=IEA;ISO] [GO:0048806 "genitalia
development" evidence=ISO] [GO:0048844 "artery morphogenesis"
evidence=IEA;ISO] [GO:0050890 "cognition" evidence=IEA;ISO]
[GO:0060021 "palate development" evidence=IEA;ISO] [GO:0060041
"retina development in camera-type eye" evidence=IEA;ISO]
[GO:0060123 "regulation of growth hormone secretion"
evidence=IEA;ISO] [GO:0060173 "limb development" evidence=ISO]
[GO:0060324 "face development" evidence=IEA;ISO] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271 Pfam:PF07533
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
SMART:SM00592 SMART:SM00717 Pfam:PF00385 RGD:1311921 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0008015 GO:GO:0003007
GO:GO:0050890 GO:GO:0001701 GO:GO:0040018 GO:GO:0007417
GO:GO:0003682 GO:GO:0001501 GO:GO:0060041 GO:GO:0007605
GO:GO:0007512 GO:GO:0004386 GO:GO:0035116 GO:GO:0060324
GO:GO:0060021 GO:GO:0048844 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0030540
GO:GO:0007628 GO:GO:0030217 GO:GO:0048752 InterPro:IPR023780
CTD:55636 KO:K14437 OrthoDB:EOG4MCWZD GO:GO:0021545 GO:GO:0043584
GO:GO:0060123 GeneTree:ENSGT00560000077077 IPI:IPI00366595
RefSeq:XP_003749947.1 PRIDE:D3ZAP7 Ensembl:ENSRNOT00000008901
GeneID:312974 KEGG:rno:312974 UCSC:RGD:1311921 Uniprot:D3ZAP7
Length = 2985
Score = 1170 (416.9 bits), Expect = 6.9e-121, Sum P(4) = 6.9e-121
Identities = 293/782 (37%), Positives = 422/782 (53%)
Query: 517 EDDKDSDPVAVNGKVQDESAVSTEDLGERNDKMVVEDADVSLRDNEGLTV-SEIHITCES 575
E+D+D Q + TEDL + +DAD + RD+ T SE ES
Sbjct: 727 EEDEDPGVQKRRSSRQVKRKRYTEDLEFKISDEEADDADAAGRDSPSNTSQSEQQ---ES 783
Query: 576 TDKDVDVGKKTSGSVAKRVQEPAVTESAQVKGKAVSYE-FLVKWVGKSNIHNSWIPESQL 634
D + G V +++ + + + G+ V E F VK+ S +H W L
Sbjct: 784 VDAE--------GPVVEKIMSSRLVKKQKESGEEVEVEEFYVKYKNFSYLHCQWASVEDL 835
Query: 635 KV--LAKRKLENYKAKYGTT--VINICDERWK----QPQRVISLRSSKDGTREA----FV 682
+ ++K++ +K+K G + + I D+ + + R++ S D E V
Sbjct: 836 EKDKRIQQKIKRFKSKQGQSKFLSEIEDDLFNPDYVEVDRIMDFARSTDDRGEPVTHYLV 895
Query: 683 KWTGLPYDECTWEKLDEPALEKYSHLTDLFVQFERQTLKKDASEDELPRGKGDCQQSEIV 742
KW LPY++ TWE + K +FE+ + ++ + + R D +
Sbjct: 896 KWCSLPYEDSTWELRQDLDQAKIE-------EFEK-LMSREPETERVERPPADDWKK--- 944
Query: 743 ALTEQPEELKGG-ALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCE 801
+E E K L +QLE +NWL W+ +N ILADEMGLGKT+ + F+ +Y +
Sbjct: 945 --SESSREYKNNNKLREYQLEGVNWLLFNWYNMRNCILADEMGLGKTIQSITFLYEIYLK 1002
Query: 802 FKAKLPCLVLVPLSTMPNWLAEFALWAPNLNVVEYHGCAKARAIIRQYEWHASDPDNLNK 861
P LV+ PLST+PNW EF W LNVV YHG +R I+ YE + DP
Sbjct: 1003 -GIHGPFLVIAPLSTIPNWEREFRTWT-ELNVVVYHGSQASRRTIQLYEMYFKDPQGRVI 1060
Query: 862 KTSSYKFNVLLTTYEMILADSSHLRGVPWEVLVVDEGHRXXXXXXXXXXXXXXXXXQHRV 921
K SYKF+ ++TT+EMIL D LR +PW +V+DE HR +H+V
Sbjct: 1061 K-GSYKFHAIITTFEMILTDCPELRNIPWRCVVIDEAHRLKNRNCKLLEGLKMMDLEHKV 1119
Query: 922 LLTGTPLQNNIGEMYNLLNFLQPASFPSLSSFEEKFNDLTTTQKVEELKKLVAPHMLRRL 981
LLTGTPLQN + E+++LL+FL+P+ FPS ++F ++F DL T ++V++L+ ++ P MLRRL
Sbjct: 1120 LLTGTPLQNTVEELFSLLHFLEPSRFPSETTFMQEFGDLKTEEQVQKLQAILKPMMLRRL 1179
Query: 982 KKDAMQNIPPKTERMVPVELSSIQAEYYRAMLTKNYQILRNIGKGVAQQSMLNIVMQLRK 1041
K+D +N+ PK E ++ VEL++IQ +YYRA+L KN+ L G ++LN +M+LRK
Sbjct: 1180 KEDVEKNLAPKEETIIEVELTNIQKKYYRAILEKNFTFLSKGGGQANVPNLLNTMMELRK 1239
Query: 1042 VCNHPYLIPGTEP----------DSGSVEFLHEMRIKASAKLTLLHSMLKVLYKEGHRVL 1091
CNHPYLI G E ++ S +F + I+A+ KL L+ +L L GHRVL
Sbjct: 1240 CCNHPYLINGAEEKILEEFKDAHNADSPDFQLQAMIQAAGKLVLIDKLLPKLKAGGHRVL 1299
Query: 1092 IFSQMTKLLDILEDYLNIEFGPKTYERVDGSVSVGDRQAAITRFNQ-DKSRFVFLLSTRS 1150
IFSQM + LDILEDYL P YER+DG V RQAAI RF++ D RFVFLL TR+
Sbjct: 1300 IFSQMVRCLDILEDYLIQRRYP--YERIDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRA 1357
Query: 1151 CGLGINLATADTVIIYDSDFNPHADIQAMNRAHRIGQSKRLLVYRLVVRASVEERILQLA 1210
GLGINL ADT II+DSD+NP D+QA R HRIGQSK + +YRL+ R S E + A
Sbjct: 1358 GGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKSVKIYRLITRNSYEREMFDKA 1417
Query: 1211 KKKLMLDQLFVNK-SGSQKEVEDILRWGTEELFND--SPGINGKDMGENNTSIEEAVRDL 1267
KL LD+ + SG + + + +E+ D G G M E + + D+
Sbjct: 1418 SLKLGLDKAVLQSMSGRENATNGVQQLSKKEI-EDLLRKGAYGALMDEEDEGSKFCEEDI 1476
Query: 1268 EQ 1269
+Q
Sbjct: 1477 DQ 1478
Score = 52 (23.4 bits), Expect = 6.4e-120, Sum P(3) = 6.4e-120
Identities = 14/55 (25%), Positives = 27/55 (49%)
Query: 19 KRKRRKLPCGPGLSNGKEENLVTSESPRNTPSAKRRLKNEINADRSSTKKKGNDG 73
++K K P P +E + +P+ S+K+ + +++ S+ KKK N G
Sbjct: 653 EKKEPKTPKAPKTPKEPKERKAKTVTPK-PKSSKKSSNKKPDSEASALKKKVNKG 706
Score = 50 (22.7 bits), Expect = 6.9e-121, Sum P(4) = 6.9e-121
Identities = 16/43 (37%), Positives = 24/43 (55%)
Query: 137 KRARSKIITIKSQSGVKSSGADKVSQIFGNSILARKRSNKGKS 179
K ++K +T K +S KSS S+ S L +K+ NKGK+
Sbjct: 670 KERKAKTVTPKPKSSKKSSNKKPDSEA---SAL-KKKVNKGKT 708
Score = 49 (22.3 bits), Expect = 1.3e-119, Sum P(3) = 1.3e-119
Identities = 16/55 (29%), Positives = 24/55 (43%)
Query: 19 KRKRRKLPCGPG-LSNGKEENLV-TSESPRNTPSAKRRLKNEINADRSSTKKKGN 71
KRKR K+ P L +E+ T ++P+ K R + S+KK N
Sbjct: 635 KRKRPKVKKDPKELKEPREKKEPKTPKAPKTPKEPKERKAKTVTPKPKSSKKSSN 689
Score = 40 (19.1 bits), Expect = 7.8e-120, Sum P(4) = 7.8e-120
Identities = 12/43 (27%), Positives = 22/43 (51%)
Query: 117 PKCTQKNDQLKPISNLDSISKRARSKIITIKSQSGVKSSGADK 159
PK ++K+ KP S ++ K+ K++ G ++S DK
Sbjct: 681 PKSSKKSSNKKPDSEASALKKKVNKG----KTE-GSENSDLDK 718
Score = 39 (18.8 bits), Expect = 6.9e-121, Sum P(4) = 6.9e-121
Identities = 10/39 (25%), Positives = 21/39 (53%)
Query: 1288 EGSTKIVWDENAIARLLDRSNLQSGSTDLAEGDLENDML 1326
+ S K+ D+ + + R N +G L++ ++E D+L
Sbjct: 1416 KASLKLGLDKAVLQSMSGRENATNGVQQLSKKEIE-DLL 1453
Score = 37 (18.1 bits), Expect = 6.9e-121, Sum P(4) = 6.9e-121
Identities = 6/15 (40%), Positives = 10/15 (66%)
Query: 98 HLQCLDPPLKRIPNG 112
H Q PP+ ++P+G
Sbjct: 101 HSQYHTPPVPQVPHG 115
>UNIPROTKB|F1NSG3 [details] [associations]
symbol:CHD7 "Chromodomain-helicase-DNA-binding protein 7"
species:9031 "Gallus gallus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0008015 "blood circulation" evidence=IEA] [GO:0021545 "cranial
nerve development" evidence=IEA] [GO:0030217 "T cell
differentiation" evidence=IEA] [GO:0030540 "female genitalia
development" evidence=IEA] [GO:0035116 "embryonic hindlimb
morphogenesis" evidence=IEA] [GO:0040018 "positive regulation of
multicellular organism growth" evidence=IEA] [GO:0043584 "nose
development" evidence=IEA] [GO:0048752 "semicircular canal
morphogenesis" evidence=IEA] [GO:0048844 "artery morphogenesis"
evidence=IEA] [GO:0050890 "cognition" evidence=IEA] [GO:0060021
"palate development" evidence=IEA] [GO:0060041 "retina development
in camera-type eye" evidence=IEA] [GO:0060123 "regulation of growth
hormone secretion" evidence=IEA] [GO:0060324 "face development"
evidence=IEA] [GO:0001501 "skeletal system development"
evidence=IEA] [GO:0001701 "in utero embryonic development"
evidence=IEA] [GO:0003007 "heart morphogenesis" evidence=IEA]
[GO:0007417 "central nervous system development" evidence=IEA]
[GO:0007512 "adult heart development" evidence=IEA] [GO:0007605
"sensory perception of sound" evidence=IEA] [GO:0007628 "adult
walking behavior" evidence=IEA] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271 Pfam:PF07533
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
SMART:SM00592 SMART:SM00717 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0040018 GO:GO:0003682
GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780 IPI:IPI00590082
OMA:TFGVIFD GO:GO:0060123 GeneTree:ENSGT00560000077077
EMBL:AADN02022009 EMBL:AADN02022010 Ensembl:ENSGALT00000024950
ArrayExpress:F1NSG3 Uniprot:F1NSG3
Length = 2248
Score = 1165 (415.2 bits), Expect = 9.0e-121, Sum P(3) = 9.0e-121
Identities = 290/748 (38%), Positives = 413/748 (55%)
Query: 552 EDADVSLRDNEGLTV-SEIHITCESTDKDVDVGKK--TSGSVAKRVQEPAVTESAQVKGK 608
+DAD + RD+ T SE ES D + V +K +S SV K+++ E +++
Sbjct: 11 DDADAAGRDSPSNTSQSEQQ---ESADAEGPVVEKIMSSRSVKKKMENG---EEVEIE-- 62
Query: 609 AVSYEFLVKWVGKSNIHNSW--IPESQLKVLAKRKLENYKAKYGTT--VINICDERWK-- 662
EF VK+ S +H W + E ++K++ +KAK G + I DE +
Sbjct: 63 ----EFYVKYKNFSYLHCQWASVEELDKDKRIQQKIKRFKAKQGQNKFLSEIDDELFNPD 118
Query: 663 --QPQRVISLRSSKDGTREA----FVKWTGLPYDECTWEKLDEPALEKYSHLTDLFVQFE 716
+ R++ S D E VKW LPY++ TWE + K +FE
Sbjct: 119 YVEIDRILDFSRSTDDNGEPVTHYLVKWCSLPYEDSTWELKQDIDQAKIE-------EFE 171
Query: 717 RQTLKKDASEDELPRGKGDCQQSEIVALTEQPEELKGG-ALFPHQLEALNWLRKCWHKSK 775
+ + ++ + + R D + +E E K L +QLE +NWL W+ ++
Sbjct: 172 K-LMSREPEMERVERPPADDWKK-----SESSREYKNNNKLREYQLEGVNWLLFNWYNTR 225
Query: 776 NVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLSTMPNWLAEFALWAPNLNVVE 835
N ILADEMGLGKT+ + F+ +Y + P LV+ PLST+PNW EF W LNVV
Sbjct: 226 NCILADEMGLGKTIQSITFLYEIYLK-GIHGPFLVIAPLSTIPNWEREFRTWT-ELNVVV 283
Query: 836 YHGCAKARAIIRQYEWHASDPDNLNKKTSSYKFNVLLTTYEMILADSSHLRGVPWEVLVV 895
YHG +R I+ YE + DP K SYKF+ ++TT+EMIL D LR +PW +V+
Sbjct: 284 YHGSQASRRTIQLYEMYFKDPQGRVIK-GSYKFHAIITTFEMILTDCPELRNIPWRCVVI 342
Query: 896 DEGHRXXXXXXXXXXXXXXXXXQHRVLLTGTPLQNNIGEMYNLLNFLQPASFPSLSSFEE 955
DE HR +H+VLLTGTPLQN + E+++LL+FL+P FPS ++F +
Sbjct: 343 DEAHRLKNRNCKLLEGLKMMDLEHKVLLTGTPLQNTVEELFSLLHFLEPGRFPSETTFMQ 402
Query: 956 KFNDLTTTQKVEELKKLVAPHMLRRLKKDAMQNIPPKTERMVPVELSSIQAEYYRAMLTK 1015
+F DL T ++V++L+ ++ P MLRRLK+D +N+ PK E ++ VEL++IQ +YYRA+L K
Sbjct: 403 EFGDLKTEEQVQKLQAILKPMMLRRLKEDVEKNLAPKEETIIEVELTNIQKKYYRAILEK 462
Query: 1016 NYQILRNIGKGVAQQSMLNIVMQLRKVCNHPYLIPGTEP----------DSGSVEFLHEM 1065
N+ L G ++LN +M+LRK CNHPYLI G E ++ S +F +
Sbjct: 463 NFAFLSKGGGQANVPNLLNTMMELRKCCNHPYLINGAEEKILEEFKETHNADSPDFQLQA 522
Query: 1066 RIKASAKLTLLHSMLKVLYKEGHRVLIFSQMTKLLDILEDYLNIEFGPKTYERVDGSVSV 1125
I+A+ KL L+ +L L GHRVLIFSQM + LDILEDYL P YER+DG V
Sbjct: 523 MIQAAGKLVLIDKLLPKLKAGGHRVLIFSQMVRCLDILEDYLIQRRYP--YERIDGRVRG 580
Query: 1126 GDRQAAITRFNQ-DKSRFVFLLSTRSCGLGINLATADTVIIYDSDFNPHADIQAMNRAHR 1184
RQAAI RF++ D RFVFLL TR+ GLGINL ADT II+DSD+NP D+QA R HR
Sbjct: 581 NLRQAAIDRFSRPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHR 640
Query: 1185 IGQSKRLLVYRLVVRASVEERILQLAKKKLMLDQLFVNK-SGSQKEVEDILRWGTEELFN 1243
IGQSK + +YRL+ R S E + A KL LD+ + SG + + + +E+
Sbjct: 641 IGQSKSVKIYRLITRNSYEREMFDKASLKLGLDKAVLQSMSGRENATNGVQQLSKKEI-E 699
Query: 1244 D--SPGINGKDMGENNTSIEEAVRDLEQ 1269
D G G M E + + D++Q
Sbjct: 700 DLLRKGAYGALMDEEDEGSKFCEEDIDQ 727
Score = 56 (24.8 bits), Expect = 9.0e-121, Sum P(3) = 9.0e-121
Identities = 15/39 (38%), Positives = 22/39 (56%)
Query: 1329 VKATEWNEETTEDQAESPVAAVDDASA-ENSERKEENAV 1366
V +T EE T +Q ES V ++ +A E S+ KEE +
Sbjct: 1397 VPSTPVQEEKTTEQTESKVEGSENPAAKEKSDIKEETDI 1435
Score = 50 (22.7 bits), Expect = 6.2e-120, Sum P(3) = 6.2e-120
Identities = 17/57 (29%), Positives = 26/57 (45%)
Query: 1311 SGSTDLAEGDLENDMLGSVKATEWNEETTEDQAESPVAAVDDASAENSERKEENAVT 1367
+G+ A G E + G+ KA E E E+ +S + D SA +S +A T
Sbjct: 2063 TGNATTASGQGETED-GASKAEEKKNENEEENKDSE-KSTDTVSATDSANGSVSAAT 2117
Score = 39 (18.8 bits), Expect = 9.0e-121, Sum P(3) = 9.0e-121
Identities = 10/39 (25%), Positives = 21/39 (53%)
Query: 1288 EGSTKIVWDENAIARLLDRSNLQSGSTDLAEGDLENDML 1326
+ S K+ D+ + + R N +G L++ ++E D+L
Sbjct: 665 KASLKLGLDKAVLQSMSGRENATNGVQQLSKKEIE-DLL 702
Score = 37 (18.1 bits), Expect = 1.5e-120, Sum P(3) = 1.5e-120
Identities = 8/33 (24%), Positives = 16/33 (48%)
Query: 1261 EEAVRDLEQKHRKRGGGLGDVYQDKCTEGSTKI 1293
EE++ KH + LG +Y + +T++
Sbjct: 1118 EESIEIHPNKHSESNSELGQLYWPNTSTLTTRL 1150
>POMBASE|SPAC1783.05 [details] [associations]
symbol:hrp1 "ATP-dependent DNA helicase Hrp1"
species:4896 "Schizosaccharomyces pombe" [GO:0000122 "negative
regulation of transcription from RNA polymerase II promoter"
evidence=IMP] [GO:0000779 "condensed chromosome, centromeric
region" evidence=IDA] [GO:0000790 "nuclear chromatin" evidence=IC]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004003 "ATP-dependent
DNA helicase activity" evidence=ISM] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0006338 "chromatin remodeling"
evidence=IMP] [GO:0006369 "termination of RNA polymerase II
transcription" evidence=IMP] [GO:0007076 "mitotic chromosome
condensation" evidence=IMP] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IDA] [GO:0016592 "mediator complex"
evidence=IPI] [GO:0030466 "chromatin silencing at silent
mating-type cassette" evidence=IMP] [GO:0030702 "chromatin
silencing at centromere" evidence=IMP] [GO:0035067 "negative
regulation of histone acetylation" evidence=IMP] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IMP] [GO:0048096 "chromatin-mediated maintenance
of transcription" evidence=TAS] [GO:0060303 "regulation of
nucleosome density" evidence=IMP] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298
SMART:SM00490 PomBase:SPAC1783.05 Pfam:PF00385 GO:GO:0005524
EMBL:CU329670 GenomeReviews:CU329670_GR GO:GO:0003677 GO:GO:0045944
GO:GO:0030466 GO:GO:0000122 GO:GO:0000790 GO:GO:0030702
GO:GO:0004003 GO:GO:0007076 GO:GO:0048096 InterPro:IPR016197
SUPFAM:SSF54160 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0000779 GO:GO:0035067 InterPro:IPR023780
PROSITE:PS00598 GO:GO:0016592 GO:GO:0006369 KO:K11367
HOGENOM:HOG000207917 OrthoDB:EOG4TF3TB EMBL:X99021 EMBL:AB027852
PIR:T43334 PIR:T50107 RefSeq:NP_593660.1 ProteinModelPortal:Q9US25
MINT:MINT-4979817 STRING:Q9US25 EnsemblFungi:SPAC1783.05.1
GeneID:2542363 KEGG:spo:SPAC1783.05 OMA:VERVIKW NextBio:20803422
GO:GO:0060303 Uniprot:Q9US25
Length = 1373
Score = 1133 (403.9 bits), Expect = 1.2e-120, Sum P(3) = 1.2e-120
Identities = 307/863 (35%), Positives = 458/863 (53%)
Query: 468 SPNVIRSSDEECMKNDIGVDRIQVYRRSVTKECKVTKECKGENAIDLLREDDKDSDPVAV 527
+P + + + + ++ D G R +R V ++ T+ + E I R+ K +
Sbjct: 84 TPKIDDAQNSDDVRVD-GTRRSSRAKRPVYRDFSYTEIDEHEIPIPKKRKS-KPAPKQKK 141
Query: 528 NGKVQDESAVSTEDLGERNDKMVVEDADVSLRDNEGLTVS----EIHITCESTDKDVDVG 583
+ DE A N E SLR ++G +V+ E + E +++V+
Sbjct: 142 SVASDDEDAYDKRHRFSINSASGTE-IRTSLRSSKGKSVNYNEQEFYDDFEDEEEEVEEQ 200
Query: 584 -KKTSGSVAKRVQEPAVTESAQVKGKAVSYEFLVKWVGKSNIHNSWIPESQLK-VLAKRK 641
++ + V AQ SY++L+KW S++HN+W S L V +K
Sbjct: 201 VEEEYEPIIDFVLNHRKRADAQDDDPKSSYQYLIKWQEVSHLHNTWEDYSTLSSVRGYKK 260
Query: 642 LENYKAK---YG-------TTVI-------------NICDERWKQPQRVISLRSSKDGTR 678
++NY + Y TT N+ E +K +R+++ ++++G
Sbjct: 261 VDNYIKQNIIYDREIREDPTTTFEDIEALDIERERKNMLFEEYKIVERIVASETNEEGKT 320
Query: 679 EAFVKWTGLPYDECTWEKLDEPALEKYSHLTDLFVQFERQTLKKDASEDELP-RGKGDCQ 737
E FVKW LPYD CTWE D YS + QF L+++ S LP +G
Sbjct: 321 EYFVKWRQLPYDNCTWEDADVI----YSMAPNEVYQF----LQRENSP-YLPYKGVFYNT 371
Query: 738 QSEIVALTEQPEELKGGALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISS 797
+ L +QP +KGG + QL +NW+ WH+++N ILADEMGLGKTV F+S
Sbjct: 372 RPPYRKLEKQPSYIKGGEIRDFQLTGINWMAYLWHRNENGILADEMGLGKTVQTVCFLSY 431
Query: 798 LYCEFKAKLPCLVLVPLSTMPNWLAEFALWAPNLNVVEYHGCAKARAIIRQYEWHASDPD 857
L K P L++VPLST+P W A W P+LN + Y G ++RA IR+YE++ S
Sbjct: 432 LVHSLKQHGPFLIVVPLSTVPAWQETLANWTPDLNSICYTGNTESRANIREYEFYLST-- 489
Query: 858 NLNKKTSSYKFNVLLTTYEMILADSSHLRGVPWEVLVVDEGHRXXXXXXXXXXXXXXXXX 917
N K KFN+LLTTYE IL D L + W+ L +DE HR
Sbjct: 490 NSRK----LKFNILLTTYEYILKDKQELNNIRWQYLAIDEAHRLKNSESSLYETLSQFRT 545
Query: 918 QHRVLLTGTPLQNNIGEMYNLLNFLQPASFPSLSSFEEKFNDLTTTQK--VEELKKLVAP 975
+R+L+TGTPLQNN+ E+ +L+NFL P F E F+ Q+ + +L++ + P
Sbjct: 546 ANRLLITGTPLQNNLKELASLVNFLMPGKFYIRD--ELNFDQPNAEQERDIRDLQERLQP 603
Query: 976 HMLRRLKKDAMQNIPPKTERMVPVELSSIQAEYYRAMLTKNYQILRNIGKGVAQQSMLNI 1035
+LRRLKKD +++P K+ER++ VELS +Q E+Y+ +LTKNY+ L G Q S+LNI
Sbjct: 604 FILRRLKKDVEKSLPSKSERILRVELSDMQTEWYKNILTKNYRALTGHTDGRGQLSLLNI 663
Query: 1036 VMQLRKVCNHPYLIPGT-EPDSGSVEFLHE--MR--IKASAKLTLLHSMLKVLYKEGHRV 1090
V++L+KV NHPYL PG E + E +R I S K+ LL +L+ L +GHRV
Sbjct: 664 VVELKKVSNHPYLFPGAAEKWMMGRKMTREDTLRGIIMNSGKMVLLDKLLQRLKHDGHRV 723
Query: 1091 LIFSQMTKLLDILEDYLNIEFGPKTYERVDGSVSVGDRQAAITRFNQ-DKSRFVFLLSTR 1149
LIFSQM ++L+IL +Y+++ G Y+R+DG++ R+ +I FN D FVFLLSTR
Sbjct: 724 LIFSQMVRMLNILGEYMSLR-G-YNYQRLDGTIPASVRRVSIDHFNAPDSPDFVFLLSTR 781
Query: 1150 SCGLGINLATADTVIIYDSDFNPHADIQAMNRAHRIGQSKRLLVYRLVVRASVEERILQL 1209
+ GLGINL TADTVII+DSD+NP AD+QAM RAHRIGQ + VYR + + +VEE IL+
Sbjct: 782 AGGLGINLNTADTVIIFDSDWNPQADLQAMARAHRIGQKNHVNVYRFLSKDTVEEDILER 841
Query: 1210 AKKKLMLDQLFVN-----KSGSQK-------EVEDILRWGTEELFNDSPGINGKDMGENN 1257
A++K++L+ ++ KS + K E+ IL++G +F + N K + N
Sbjct: 842 ARRKMILEYAIISLGVTEKSKNSKNDKYDAQELSAILKFGASNMFKATE--NQKKLENMN 899
Query: 1258 TS-IEEAVRDLEQKHRKRGGGLG 1279
I D + + G +G
Sbjct: 900 LDDILSHAEDRDSSNDVGGASMG 922
Score = 49 (22.3 bits), Expect = 1.2e-120, Sum P(3) = 1.2e-120
Identities = 28/131 (21%), Positives = 44/131 (33%)
Query: 1249 NGKDMG-ENNTSIEEAVRDLEQKHRKRGGGL---GDVYQDKCTEGSTK-IVWDENAIARL 1303
N D+G + ++EA D E ++ L G+ E +V + R
Sbjct: 1157 NDPDLGLHDKIFLDEAKNDKESRYVPSAVHLVRRGEYLLSVVREHPDLFVVKTDQPTKRK 1216
Query: 1304 LDRSNLQSGST--DLAEGDLENDMLGSVKATEWNEETTEDQAESPVAAVDDASAENSERK 1361
+R ST +G + N S + EET SP V + E R+
Sbjct: 1217 YNRKAPTKSSTRQTTLDGSISNTKKSSRTKKKKEEETNRGDETSPEGTVGEDEVEEEPRQ 1276
Query: 1362 EENAVTGIEEN 1372
E + N
Sbjct: 1277 AEPPKRALRSN 1287
Score = 42 (19.8 bits), Expect = 6.5e-120, Sum P(3) = 6.5e-120
Identities = 19/66 (28%), Positives = 28/66 (42%)
Query: 1305 DRSNLQSGSTDLAEGDLENDMLGSVKATE--WN-----EETTEDQAESPVAAVDDASAEN 1357
D SN G++ E L+ + KA + W+ EE + E + A A E
Sbjct: 911 DSSNDVGGASMGGEEFLKQFEVTDYKAEDLNWDDIIPEEEMERIEEEERMLAAQRAKEEE 970
Query: 1358 SERKEE 1363
ER+EE
Sbjct: 971 RERREE 976
Score = 40 (19.1 bits), Expect = 1.2e-120, Sum P(3) = 1.2e-120
Identities = 29/129 (22%), Positives = 53/129 (41%)
Query: 161 SQIFGNSILARKRSNKGKSVLALGVKSLEKSLDSSQVDVSCSTKPENTSAGVPVEGSSSC 220
S F +S + +N AL ++ + +S V V T+ ++ A PV S
Sbjct: 60 SSAFDDSEIVTSTANSTVVSSALSTPKIDDAQNSDDVRVD-GTR-RSSRAKRPVYRDFSY 117
Query: 221 PNDDDEKQLNASPTDSLADTKFHPAEEVLPHSQVTKSEQNDEVPVEKHEKSSTNGSSGIK 280
+ DE ++ P +K PA + Q +DE +K + S N +SG +
Sbjct: 118 -TEIDEHEI---PIPKKRKSK--PAPK-----QKKSVASDDEDAYDKRHRFSINSASGTE 166
Query: 281 FVLAIGASE 289
++ +S+
Sbjct: 167 IRTSLRSSK 175
>UNIPROTKB|J9P6Y8 [details] [associations]
symbol:CHD1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 GeneTree:ENSGT00560000076896
OMA:AETHENE EMBL:AAEX03002026 Ensembl:ENSCAFT00000043995
Uniprot:J9P6Y8
Length = 1782
Score = 1107 (394.7 bits), Expect = 3.5e-120, Sum P(4) = 3.5e-120
Identities = 280/742 (37%), Positives = 407/742 (54%)
Query: 517 EDDKDSD--PVAVNGKVQDESAVSTEDLGERNDKMVVEDADVSLRDNEGLTVSEIHITCE 574
++DK S VN +++ + T+ +D + V DV + E E + C
Sbjct: 208 DNDKRSSRRQATVNVSYKEDEEMKTDS----DDLLEVCGEDVPQPEEEEFETIERFMDCR 263
Query: 575 STDKDVDVGKKTSGSVAKRVQEP-AVTESAQVKGKAVSYEFLVKWVGKSNIHNSWIPESQ 633
K G T+ + +P A E + G+ ++L+KW G S+IHN+W E
Sbjct: 264 IGRKGA-TGATTTIYAVEADGDPNAGFEKNKEPGEI---QYLIKWKGWSHIHNTWETEET 319
Query: 634 LK---VLAKRKLENYKAK-----------------YGTTVINICDERWKQPQ---RVISL 670
LK V +KL+NYK K Y + D+ KQ Q R+I+
Sbjct: 320 LKQQNVRGMKKLDNYKKKDQETKRWLKNASPEDVEYYNCQQELTDDLHKQYQIVERIIAH 379
Query: 671 RSSKD--GTREAFVKWTGLPYDECTWEKLDEPAL-EKYSHLTDLFVQFERQTLKKDASED 727
+ K G + + KW GLPY EC+WE D + +K+ D + F R K +D
Sbjct: 380 SNQKSAAGYPDYYCKWQGLPYSECSWE--DGALISKKFQACIDEY--FSRNQSKTTPFKD 435
Query: 728 ELPRGKGDCQQSEIVALTEQPEELKGGA---LFPHQLEALNWLRKCWHKSKNVILADEMG 784
K Q+ VAL +QP + G L +QL LNWL W K + ILADEMG
Sbjct: 436 ----CKVLKQRPRFVALKKQPSYIGGHESLELRDYQLNGLNWLAHSWCKGNSCILADEMG 491
Query: 785 LGKTVSACAFISSLYCEFKAKLPCLVLVPLSTMPNWLAEFALWAPNLNVVEYHGCAKARA 844
LGKT+ +F++ L+ E + P L++VPLST+ +W E WA +N V Y G +R
Sbjct: 492 LGKTIQTISFLNYLFHEHQLYGPFLLVVPLSTLTSWQREIQTWASQMNAVVYLGDINSRN 551
Query: 845 IIRQYEWHASDPDNLNKKTSSYKFNVLLTTYEMILADSSHLRGVPWEVLVVDEGHRXXXX 904
+IR +EW ++ +T KFN+LLTTYE++L D + L G+ W + VDE HR
Sbjct: 552 MIRTHEW-------MHPQTKRLKFNILLTTYEILLKDKAFLGGLNWAFIGVDEAHRLKND 604
Query: 905 XXXXXXXXXXXXXQHRVLLTGTPLQNNIGEMYNLLNFLQPASFPSLSSFEEKFNDLTTTQ 964
HR+L+TGTPLQN++ E+++LL+F+ P F S FEE+
Sbjct: 605 DSLLYKTLIDFKSNHRLLITGTPLQNSLKELWSLLHFIMPEKFSSWEDFEEEHGK-GREY 663
Query: 965 KVEELKKLVAPHMLRRLKKDAMQNIPPKTERMVPVELSSIQAEYYRAMLTKNYQILRNIG 1024
L K + P +LRR+KKD +++P K E+++ +E+S++Q +YY+ +LT+NY+ L
Sbjct: 664 GYASLHKELEPFLLRRVKKDVEKSLPAKVEQILRMEMSALQKQYYKWILTRNYKALSKGS 723
Query: 1025 KGVAQQSMLNIVMQLRKVCNHPYLI--PGTEPDSGSVEFLHEMRIKASAKLTLLHSMLKV 1082
KG + LNI+M+L+K CNH YLI P E L + I++S KL LL +L
Sbjct: 724 KG-STSGFLNIMMELKKCCNHCYLIKPPDNNEFYNKQEALQHL-IRSSGKLILLDKLLIR 781
Query: 1083 LYKEGHRVLIFSQMTKLLDILEDYLNIEFGPKTYERVDGSVSVGDRQAAITRFNQDKSR- 1141
L + G+RVLIFSQM ++LDIL +YL P ++R+DGS+ R+ A+ FN + S
Sbjct: 782 LRERGNRVLIFSQMVRMLDILAEYLKYRQFP--FQRLDGSIKGELRKQALDHFNAEGSED 839
Query: 1142 FVFLLSTRSCGLGINLATADTVIIYDSDFNPHADIQAMNRAHRIGQSKRLLVYRLVVRAS 1201
F FLLSTR+ GLGINLA+ADTV+I+DSD+NP D+QA RAHRIGQ K++ +YRLV + S
Sbjct: 840 FCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGS 899
Query: 1202 VEERILQLAKKKLMLDQLFVNK 1223
VEE IL+ AKKK++LD L + +
Sbjct: 900 VEEDILERAKKKMVLDHLVIQR 921
Score = 61 (26.5 bits), Expect = 2.6e-118, Sum P(3) = 2.6e-118
Identities = 32/104 (30%), Positives = 41/104 (39%)
Query: 1265 RDLEQKHRKRGGGLGDVYQDKCTEGSTKIVWDENAIARLL-DRSNLQSGSTDLAEGDLEN 1323
RDL +K +R G G + K K + + D S L S +D E D +
Sbjct: 1297 RDLAKKEAQRLSGAGGSKRRKARAKKNKAMKSIKVKEEMKSDSSPLPSEKSD--EDD-DK 1353
Query: 1324 DMLGSVKATEWNEETTEDQAESPVAAV--DDASAENSERKE-EN 1364
D + SVK +T D E P V S E E KE EN
Sbjct: 1354 DEITSVKHPNKKIKTERDSEERPEPDVFIKKESEEKREAKEKEN 1397
Score = 58 (25.5 bits), Expect = 3.5e-120, Sum P(4) = 3.5e-120
Identities = 18/57 (31%), Positives = 30/57 (52%)
Query: 1226 SQKEVEDILRWGTEELFNDSPGINGKDMGENNTSIEEAVRDLEQKHRKRGGGL--GD 1280
+++E+ IL++G EELF + P G++ I+E ++ E H G L GD
Sbjct: 943 NKEELSAILKFGAEELFKE-P--EGEEQEPQEMDIDEILKRAET-HENEPGPLTVGD 995
Score = 58 (25.5 bits), Expect = 3.5e-120, Sum P(4) = 3.5e-120
Identities = 29/118 (24%), Positives = 44/118 (37%)
Query: 191 SLDSSQVDVSCSTKPENTSAGVPVEGSSSCPNDDD--EKQLNASP--TDSLADTKFHPAE 246
S S D S S + S GS S D E ++ A P D K P+
Sbjct: 17 SSSGSSSDGSSSQSGSSDSDSGSESGSQSESESDTSRENKVQAKPPKVDGAEFWKSSPSI 76
Query: 247 EVLPHSQVTKSEQNDEVPVEKHEKSSTNGSSGIKFVLAIGASERDRKRKPEVKDEDSQ 304
+ S + K +Q + ++H SS +GS + ++ + KDED Q
Sbjct: 77 LAVQRSAMLKKQQQQQ---QQHPASSNSGSEEDSSSSEDSDDSSNEVKRKKHKDEDWQ 131
Score = 55 (24.4 bits), Expect = 7.2e-120, Sum P(4) = 7.2e-120
Identities = 15/55 (27%), Positives = 32/55 (58%)
Query: 5 SSSTSTMINRNWVLKRKRRKLPCGPGLSN-GKEENLVTSESPRNTPSAKRRLKNE 58
SS + + R+ +LK+++++ P SN G EE+ +SE ++ + +R K++
Sbjct: 72 SSPSILAVQRSAMLKKQQQQQQQHPASSNSGSEEDSSSSEDSDDSSNEVKRKKHK 126
Score = 50 (22.7 bits), Expect = 2.4e-119, Sum P(4) = 2.4e-119
Identities = 28/129 (21%), Positives = 49/129 (37%)
Query: 148 SQSGVKSS--GADKVSQIFGNSILARKRSNKGKSVLALGVKSLEKSLDSSQVDVSCSTKP 205
SQSG S G++ SQ S +R+ + K G + + S V S K
Sbjct: 28 SQSGSSDSDSGSESGSQSESESDTSRENKVQAKPPKVDGAEFWKSSPSILAVQRSAMLKK 87
Query: 206 ENTSAGVPVEGSSSCPNDDDEKQLNASPTDSLADTKFHPAEE--VLPHSQVTKSEQNDEV 263
+ S+S +D ++ + + K H E+ + ++S + E
Sbjct: 88 QQQQQQQHPASSNSGSEEDSSSSEDSDDSSNEVKRKKHKDEDWQMSGSGSPSQSGSDSES 147
Query: 264 PVEKHEKSS 272
E+ +KSS
Sbjct: 148 EEEERDKSS 156
Score = 49 (22.3 bits), Expect = 3.1e-119, Sum P(4) = 3.1e-119
Identities = 30/136 (22%), Positives = 56/136 (41%)
Query: 167 SILARKRSNKGKSVLALGVKSLEKSLDSSQVDVSCSTKPENTSAGVPVEGSSSCPNDDDE 226
SILA +RS K + S S+ D S S +++S V + ++D +
Sbjct: 75 SILAVQRSAMLKKQQQQQQQHPASSNSGSEEDSSSSEDSDDSSNEVKRKKHK---DEDWQ 131
Query: 227 KQLNASPTDSLADTKFHPAEEVLPHSQVTKSEQNDEVPVEKHEKSSTNGSSGIKFVLAIG 286
+ SP+ S +D++ E T+S+ + V+ + + + + K +L G
Sbjct: 132 MSGSGSPSQSGSDSESEEEERDKSSCDETESDYEPKNKVKSRKPQNRSKAKNGKKIL--G 189
Query: 287 ASERDRKRKPEVKDED 302
+R E DE+
Sbjct: 190 QKKRQIDSSEEEDDEE 205
Score = 45 (20.9 bits), Expect = 8.0e-119, Sum P(4) = 8.0e-119
Identities = 12/38 (31%), Positives = 18/38 (47%)
Query: 19 KRKRRKLPCGPGLSNGKEENLVTSESPRNTPSAKRRLK 56
+ +R K C S+ + +N V S P+N AK K
Sbjct: 149 EEERDKSSCDETESDYEPKNKVKSRKPQNRSKAKNGKK 186
Score = 44 (20.5 bits), Expect = 1.0e-118, Sum P(4) = 1.0e-118
Identities = 14/43 (32%), Positives = 22/43 (51%)
Query: 200 SCSTKPENTSAGVPVEGSSSCP--NDDDEKQLNASPTDSLADT 240
S S +S+G +GSSS +D D + S ++S +DT
Sbjct: 9 SASGSGSGSSSGSSSDGSSSQSGSSDSDSGSESGSQSESESDT 51
Score = 42 (19.8 bits), Expect = 1.7e-118, Sum P(4) = 1.7e-118
Identities = 25/143 (17%), Positives = 52/143 (36%)
Query: 414 GDDTSSSCHISATATDDRHSDDFLVSENHNKILEENLACDTDLDAEVTENLAELSPNVIR 473
G + S S ++ D S+ SE+ + EN + E + SP+++
Sbjct: 20 GSSSDGSSSQSGSSDSDSGSESGSQSESESDTSRENKVQAKPPKVDGAE-FWKSSPSILA 78
Query: 474 SSDEECMKNDIGVDRIQ-VYRRSVTKECKVTKECKGENAIDLLREDDKDSDPVAVNGKVQ 532
+K + S ++E + E +++ ++ R+ KD D
Sbjct: 79 VQRSAMLKKQQQQQQQHPASSNSGSEEDSSSSEDSDDSSNEVKRKKHKDEDWQMSGSGSP 138
Query: 533 DESAVSTEDLGERNDKMVVEDAD 555
+S +E E DK ++ +
Sbjct: 139 SQSGSDSESEEEERDKSSCDETE 161
Score = 40 (19.1 bits), Expect = 3.5e-120, Sum P(4) = 3.5e-120
Identities = 12/45 (26%), Positives = 22/45 (48%)
Query: 1329 VKATEWNEETTEDQAESPVAAVDDASAENSERKEENAVTGIEENE 1373
+K + NE +E + S ++V DA + E ++ EE+E
Sbjct: 1437 IKEEKLNESKSESKERSKKSSVSDAPVHITASGEPVPIS--EESE 1479
>WB|WBGene00007053 [details] [associations]
symbol:chd-7 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0016817 "hydrolase activity, acting on acid
anhydrides" evidence=IEA] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR006576
Pfam:PF00176 Pfam:PF00271 Pfam:PF07533 PROSITE:PS50013
PROSITE:PS51194 SMART:SM00298 SMART:SM00490 SMART:SM00592
SMART:SM00717 Pfam:PF00385 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0003682 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR017877 PROSITE:PS50090
InterPro:IPR023780 KO:K14437 GeneTree:ENSGT00560000077077
EMBL:FO080504 EMBL:FO080107 RefSeq:NP_491426.2 PaxDb:O61845
EnsemblMetazoa:T04D1.4 GeneID:172079 KEGG:cel:CELE_T04D1.4
UCSC:T04D1.4 CTD:172079 WormBase:T04D1.4 HOGENOM:HOG000213105
InParanoid:O61845 OMA:LLAFRME NextBio:873933 Uniprot:O61845
Length = 2967
Score = 1158 (412.7 bits), Expect = 1.1e-119, Sum P(2) = 1.1e-119
Identities = 289/795 (36%), Positives = 446/795 (56%)
Query: 509 ENAIDLLREDDKDSD-PVAVNGKVQDESAVSTED-LGERNDKMV--VEDADVSLRDNE-G 563
E ++ + DD+D + + ++ D +A+ E L R K+ V + +V+ E G
Sbjct: 954 EAGVEGAKSDDEDDEFLMKIDTPAPDPNAMVVEKILNMRMGKVEKKVPETEVAEGSEENG 1013
Query: 564 LTVSEIHITCESTDKDVDVGKKTSGSVAKRVQEPAVTESAQVKGKAVSYEFLVKWVGKSN 623
SE + E + + +G +K E +E+ +++ + V +FL+KW G+S
Sbjct: 1014 EEKSEEKVKKEPKENGENGESVGNGESSKSKTE---SETNEIEEEEVE-QFLIKWKGRSY 1069
Query: 624 IHNSWIPESQLKVLAKR---KLENYKAKYGTTVINICDERWKQP----QRVISLRSSKDG 676
+H W ++L + KR K++ +K K ++ I DE + RV+ L + DG
Sbjct: 1070 VHCEWKTAAELLEIDKRVEAKIKRFKVKKMSSYIED-DEDFNSDFVIVDRVVDLITEDDG 1128
Query: 677 TREAFVKWTGLPYDECTWEKLDEPALEKYSHLTDLFVQFERQTLKKDASEDELPRGKGDC 736
+KW L Y+E TWE ++ +K +L+ ERQ + D ++ R K
Sbjct: 1129 QEFVLIKWKSLGYEEVTWEPIEMIPADK----VELWR--ERQVI--DPAKI---REKQRP 1177
Query: 737 QQSEIVALTEQPEELKGGALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFIS 796
+ E ++ G +L +Q E ++WL C++ ++N ILADEMGLGKTV F+S
Sbjct: 1178 EPEEWKKMSTSKVWKNGNSLREYQFEGVDWLLYCYYNAQNCILADEMGLGKTVQTITFLS 1237
Query: 797 SLYCEFKAKLPCLVLVPLSTMPNWLAEFALWAPNLNVVEYHGCAKARAIIRQYE--WHAS 854
+Y ++ P LV+VPLST+ NW+ EF W ++N + YHG A AR +++QYE +
Sbjct: 1238 RIY-DYGIHGPFLVVVPLSTIQNWVREFETWT-DMNAIVYHGSAYAREVLQQYEVFYDKR 1295
Query: 855 DPDNLNKKTSSYKFNVLLTTYEMILADSSHLRGVPWEVLVVDEGHRXXXXX-XXXXXXXX 913
N K + K + L+TT+E +++D L+ +PW V V+DE HR
Sbjct: 1296 HCGAKNWKKNFVKIDALITTFETVVSDVEFLKKIPWRVCVIDEAHRLKNRNCKLLVNGLL 1355
Query: 914 XXXXQHRVLLTGTPLQNNIGEMYNLLNFLQPASFPSLSSFEEKFNDLTTTQKVEELKKLV 973
+HRVLLTGTPLQNNI E+++LLNFL P F + ++F E+F T +V++L++++
Sbjct: 1356 AFRMEHRVLLTGTPLQNNIDELFSLLNFLHPQQFDNSATFLEQFGSCQTDDQVQKLQEIL 1415
Query: 974 APHMLRRLKKDAMQNIPPKTERMVPVELSSIQAEYYRAMLTKNYQILRNIGKGVAQQSML 1033
P MLRRLK+D +++ PK E ++ V+LS +Q ++YRA+L +N+ ++ KG + S++
Sbjct: 1416 KPMMLRRLKEDVEKSLGPKEETIIEVQLSDMQKKFYRAILERNFS---HLCKGTSAPSLM 1472
Query: 1034 NIVMQLRKVCNHPYLIPGTE-----------PDSGSVEFLHEMRIKASAKLTLLHSMLKV 1082
N++M+LRK CNHP+LI G E PD H+ I+AS K+ L+ +L
Sbjct: 1473 NVMMELRKCCNHPFLINGAEEAIMNDFRLAHPDWDEETLAHKALIQASGKVVLIEKLLPK 1532
Query: 1083 LYKEGHRVLIFSQMTKLLDILEDYLNIEFGPKTYERVDGSVSVGD-RQAAITRFNQDKS- 1140
L K+GH+VLIFSQM K+LD+LE++L P +ER+DG+V GD RQAAI RF+++ S
Sbjct: 1533 LRKDGHKVLIFSQMVKVLDLLEEFLISMSYP--FERIDGNVR-GDLRQAAIDRFSKENSD 1589
Query: 1141 RFVFLLSTRSCGLGINLATADTVIIYDSDFNPHADIQAMNRAHRIGQSKRLLVYRLVVRA 1200
RFVFLL TR+ GLGINL ADTVII+DSD+NP D+QA R HRIGQ K + VYRL+
Sbjct: 1590 RFVFLLCTRAGGLGINLTAADTVIIFDSDWNPQNDLQAQARCHRIGQKKLVKVYRLITSN 1649
Query: 1201 SVEERILQLAKKKLMLDQLFVNKSGSQK-EVEDILRWGTEELFNDSPGINGKDMGENNTS 1259
+ E + A KL LD+ + + + K E + + EEL G G M E N S
Sbjct: 1650 TYEREMFDKASLKLGLDKAVLQSTTALKAEGTALSKKDVEELLKK--GAYGSIMDEENES 1707
Query: 1260 IEEAVRDLEQKHRKR 1274
+ D+E ++R
Sbjct: 1708 SKFNEEDIETILQRR 1722
Score = 71 (30.1 bits), Expect = 1.1e-119, Sum P(2) = 1.1e-119
Identities = 37/129 (28%), Positives = 58/129 (44%)
Query: 185 VKSLEKSLDSSQVDVSCSTKPENTS--AGVPVE-GSSSCPNDDDEKQLNASPTDSLADTK 241
V+ E DSS VD S K ++ AGV G D+D+ + +++ + S D K
Sbjct: 803 VEEPEPMDDSSPVDQSTPVKADDIENFAGVEETFGEEEEVQDEDDDEASSAKS-SKDDIK 861
Query: 242 FHPAEEVLPHSQVTKSEQNDEVPVEKHEKSSTNGSSGIKFVLAIGASERDRKRKPEVKDE 301
EE S +TK E P E ++ T S+ ++ +S++ R+P V
Sbjct: 862 ---EEEDDDTSTITKDMS--EAPSETND-GFTEPSTPATPLMGATSSKKKSYRRPAVVVA 915
Query: 302 DSQKKLRVD 310
S+KK VD
Sbjct: 916 KSRKKKSVD 924
Score = 57 (25.1 bits), Expect = 3.3e-118, Sum P(2) = 3.3e-118
Identities = 24/95 (25%), Positives = 36/95 (37%)
Query: 191 SLDSSQVDVSCSTKPENT------SAGV---PVEGSSSCPNDDDEKQLNASPTDSLADTK 241
S+D V+V +P +T S G P E + P ++ E ++SP D K
Sbjct: 763 SVDPEPVEVEAQQEPADTEEYPIPSVGTIEEPAEEPAEEPVEEPEPMDDSSPVDQSTPVK 822
Query: 242 ------FHPAEEVLPHSQVTKSEQNDEVPVEKHEK 270
F EE + + E +DE K K
Sbjct: 823 ADDIENFAGVEETFGEEEEVQDEDDDEASSAKSSK 857
Score = 40 (19.1 bits), Expect = 2.1e-116, Sum P(2) = 2.1e-116
Identities = 14/61 (22%), Positives = 25/61 (40%)
Query: 216 GSSSCPNDDDEKQLNASPTDSLADTKFHPAEEVLPHSQVTKSEQNDEVPVEKHEKSSTNG 275
GS + + E + PT S+ ++ P +P++ K E P ++ NG
Sbjct: 442 GSGASSTESKESIVPPEPTPSMQES---P----VPNAPQVKMEPEKPSPYQQQYNGMENG 494
Query: 276 S 276
S
Sbjct: 495 S 495
>DICTYBASE|DDB_G0280705 [details] [associations]
symbol:DDB_G0280705 "CHR group protein" species:44689
"Dictyostelium discoideum" [GO:0005634 "nucleus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0006357 "regulation of
transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0004003 "ATP-dependent DNA helicase activity" evidence=ISS]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001005
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013
PROSITE:PS51194 SMART:SM00298 SMART:SM00490 SMART:SM00717
dictyBase:DDB_G0280705 Pfam:PF00385 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0006357 GO:GO:0003682 EMBL:AAFI02000037
GO:GO:0004003 InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
KO:K14437 RefSeq:XP_641133.1 ProteinModelPortal:Q54UZ8
EnsemblProtists:DDB0220644 GeneID:8622691 KEGG:ddi:DDB_G0280705
InParanoid:Q54UZ8 OMA:YPHERID ProtClustDB:CLSZ2846801
Uniprot:Q54UZ8
Length = 2373
Score = 1134 (404.2 bits), Expect = 1.1e-119, Sum P(4) = 1.1e-119
Identities = 258/643 (40%), Positives = 367/643 (57%)
Query: 613 EFLVKWVGKSNIHNSWIPESQLKVL--AKRKLENYKAKY------GTTVINICDERWKQ- 663
E LVKW S IH+SWI + +K +L+ + K +++ W++
Sbjct: 357 EVLVKWKDLSYIHSSWINSKLMNQTRSSKMRLQRFIQKNIENEDNSDLLVSSTQPSWEEF 416
Query: 664 -------PQRVISLRSSK-DGTREAFVKWTGLPYDECTWEKLDEPALEKYSHLTDLFVQF 715
R +S+ S+K ++ +KW + Y TWE D+ DL ++
Sbjct: 417 TEVEKVLDVRTVSVTSNKFKADKQYLIKWKSISYSLSTWEYQDD-------FKDDLKIE- 468
Query: 716 ERQTLKKDASEDELPRGKGDCQQSEIVALTEQPEEL-KGGALFPHQLEALNWLRKCWHKS 774
+ L + S++EL R K ++ + + P+ KG L P+QLE LNWL CWH+
Sbjct: 469 QYYKLNEMPSKEEL-RDKPRPPRTAWKKIDQSPDYFTKGNKLRPYQLEGLNWLSFCWHEQ 527
Query: 775 KNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLSTMPNWLAEFALWAPNLNVV 834
+N IL DEMGLGKTV + + + +L + P LV+ PL+T+P+W EF W ++N +
Sbjct: 528 RNSILGDEMGLGKTVQSVSILETLRKVHGIRGPFLVVAPLTTIPHWKREFENWT-DMNAL 586
Query: 835 EYHGCAKARAIIRQYEWHASDPDNLNKKTSS------YKFNVLLTTYEMILADSSHLRGV 888
YH R I R YE++ D D S KFNVL+TTYEM + D +HL +
Sbjct: 587 VYHDSGAGRPICRNYEFYLKDKDGGGGGASGGASGKITKFNVLITTYEMAITDRTHLSRI 646
Query: 889 PWEVLVVDEGHRXXXXXXXXXXXXXXXXXQHRVLLTGTPLQNNIGEMYNLLNFLQPASFP 948
PW+ LV+DE HR H +LLTGTPLQNN E+++LLNFL P F
Sbjct: 647 PWKYLVIDEAHRLKNKSCKLTIELRSYSFDHLLLLTGTPLQNNTQELWSLLNFLDPKQFS 706
Query: 949 SLSSFEEKFNDLTTTQKVEELKKLVAPHMLRRLKKDAMQNIPPKTERMVPVELSSIQAEY 1008
+L F ++ DL + +VE L+ ++ P++LRR+K+ ++I PK E +V VEL+++Q +Y
Sbjct: 707 NLDQFLLEYGDLKESSQVESLQAILKPYLLRRMKERVEKSIAPKEETIVEVELTTVQKKY 766
Query: 1009 YRAMLTKNYQILRNIGKGVAQQSMLNIVMQLRKVCNHPYLIPGTEP-DSGSV---EFLHE 1064
YRA+ KN+ LR GK S+LNI+M+LRK CNHPYL G E ++ S+ + + +
Sbjct: 767 YRAIYEKNFSFLRKGGKSNQGPSLLNIMMELRKCCNHPYLTKGVEQSETSSIKDKDQIFQ 826
Query: 1065 MRIKASAKLTLLHSMLKVLYKEGHRVLIFSQMTKLLDILEDYLNIEFGPKTYERVDGSVS 1124
I+AS KL L+ +L L H+VLIFSQM +LDIL+DYL P +ER+DGS+
Sbjct: 827 KLIQASGKLVLIDKLLPKLKLGNHKVLIFSQMVSVLDILDDYLTYRGYP--HERIDGSIK 884
Query: 1125 VGDRQAAITRFNQ-DKSRFVFLLSTRSCGLGINLATADTVIIYDSDFNPHADIQAMNRAH 1183
DRQAAI RF++ D RFVFLL TR+ G+GINL ADTVII+DSD+NP D+QA R H
Sbjct: 885 GNDRQAAIDRFSKPDSDRFVFLLCTRAGGIGINLTAADTVIIFDSDWNPQNDLQAQARCH 944
Query: 1184 RIGQSKRLLVYRLVVRASVEERILQLAKKKLMLDQLFVNKSGS 1226
RIGQ K + VYRLV + + E + A KKL LD+ + K S
Sbjct: 945 RIGQDKMVKVYRLVTKNTYERLMFDKASKKLGLDRAVLTKMNS 987
Score = 59 (25.8 bits), Expect = 1.1e-119, Sum P(4) = 1.1e-119
Identities = 25/97 (25%), Positives = 42/97 (43%)
Query: 509 ENAIDLLREDDKDSDPVAVNGKVQDESAVSTEDLGERNDKMVVEDA----DVSLRDNEGL 564
EN D +++ + + + K +S +S ED E +D V +D DV ++D E
Sbjct: 50 ENNNDSDSDNNNNKNKKSTKSKNSKKSNLSGED-SENDDNDVEKDENENNDVEMKDEEEE 108
Query: 565 TVSEIHITCESTDKDV----DVGKKTSGSVAKRVQEP 597
E + E + D D+ KK+ G V +P
Sbjct: 109 EEEEEELEEEEEEDDSEDSDDLSKKSRGRPKASVSKP 145
Score = 59 (25.8 bits), Expect = 1.1e-119, Sum P(4) = 1.1e-119
Identities = 40/222 (18%), Positives = 90/222 (40%)
Query: 178 KSVLALGVKS-LEKSLDSSQVDVSC----STKPENTSAGVPVEGSSSCPNDDD-EKQLNA 231
+S+ AL K LE + DS + + STK +N+ + G S +D+D EK N
Sbjct: 38 RSIAALKNKEILENNNDSDSDNNNNKNKKSTKSKNSKKS-NLSGEDSENDDNDVEKDENE 96
Query: 232 SPTDSLADTKFHPAEE--VLPHSQVTKSEQNDEVPVEKH--EKSSTNGSSGIKFVLAIGA 287
+ + D + EE + + SE +D++ + K+S + K +
Sbjct: 97 NNDVEMKDEEEEEEEEEELEEEEEEDDSEDSDDLSKKSRGRPKASVSKPPPPKVPKSKPI 156
Query: 288 SERDRKRKPEVKDEDSQKKLRVDXXXXXXXXXXXXXXXIGTLSPGTSKLHEKQRTNNDEV 347
++ + K+ K+ ++K ++ SK K + + +
Sbjct: 157 AKTNNKKNSNTKEVIIKEKSKITTTTTTTTTATTTATITPPPPKPVSKPVGKPKGSVSKK 216
Query: 348 SASLCEVDVGTKGLDAQRKDELAEETTDPLDKSDKAGVHVNE 389
+A+L + + +++ +E E+ + ++ ++ G + N+
Sbjct: 217 AAALAKKKNNVQS-ESEESEESESESEEDEEEEEEKGANKNK 257
Score = 47 (21.6 bits), Expect = 2.0e-118, Sum P(4) = 2.0e-118
Identities = 13/55 (23%), Positives = 30/55 (54%)
Query: 252 SQVTKSEQNDEVPVEKHEKSSTNGSSGIKFVLAIGASERDRKRKPEVKDEDSQKK 306
S+ +SE+++ E E+ G++ K +E++ + K E +D+D++K+
Sbjct: 229 SESEESEESESESEEDEEEEEEKGANKNK-----KKNEKENQVKGEGEDDDNEKE 278
Score = 45 (20.9 bits), Expect = 1.1e-119, Sum P(4) = 1.1e-119
Identities = 23/85 (27%), Positives = 38/85 (44%)
Query: 1299 AIARLLDRSNLQSGSTDLAEGDLENDML-GSVKAT--EW----NEETTEDQAESPVAAVD 1351
++A LL +L + D +ND+L G+ K E+ N+ T + D
Sbjct: 1405 SVAELL--GDLSDAPFSWWKSDKDNDLLIGTYKHGFGEYEMIRNDPTLSFSKYKWKLSTD 1462
Query: 1352 DASAENSERKEENAVTG-IEENEWD 1375
D ++S+ K E+ T I+E E D
Sbjct: 1463 DDGGDDSKSKTESTTTTTIDEEEED 1487
Score = 44 (20.5 bits), Expect = 4.2e-118, Sum P(4) = 4.2e-118
Identities = 14/63 (22%), Positives = 30/63 (47%)
Query: 493 RRSVTKECKVTKECKGENAIDLLREDDKDSDPVAVNGKVQDESAVSTEDLGERNDKMVVE 552
+ +V E + ++E + E+ D E++K ++ K ++E + GE +D E
Sbjct: 224 KNNVQSESEESEESESESEEDEEEEEEKGAN----KNKKKNEKENQVKGEGEDDDNEKEE 279
Query: 553 DAD 555
D +
Sbjct: 280 DGE 282
Score = 41 (19.5 bits), Expect = 8.7e-118, Sum P(4) = 8.7e-118
Identities = 6/45 (13%), Positives = 26/45 (57%)
Query: 502 VTKECKGENAIDLLREDDKDSDPVAVNGKVQDESAVSTEDLGERN 546
V K+ N +++ E++++ + + + +++ + ++DL +++
Sbjct: 90 VEKDENENNDVEMKDEEEEEEEEEELEEEEEEDDSEDSDDLSKKS 134
Score = 38 (18.4 bits), Expect = 1.1e-119, Sum P(4) = 1.1e-119
Identities = 11/35 (31%), Positives = 16/35 (45%)
Query: 1223 KSGSQKEVEDILRWGTEELFNDSPGINGKDMGENN 1257
+S +E D +E D GING G+N+
Sbjct: 1118 ESSDDEEQSDFEPDEDDESTRDIGGINGTIGGQNS 1152
Score = 37 (18.1 bits), Expect = 2.5e-117, Sum P(3) = 2.5e-117
Identities = 7/22 (31%), Positives = 10/22 (45%)
Query: 1238 TEELFNDSPGINGKDMGENNTS 1259
T LFN + N + NN +
Sbjct: 2115 TTSLFNHNKNFNNNNNNNNNNN 2136
>SGD|S000000966 [details] [associations]
symbol:CHD1 "Chromatin remodeler that regulates various
aspects of transcription" species:4932 "Saccharomyces cerevisiae"
[GO:0030874 "nucleolar chromatin" evidence=IDA] [GO:0042766
"nucleosome mobilization" evidence=IDA] [GO:0000182 "rDNA binding"
evidence=IDA] [GO:0005739 "mitochondrion" evidence=IDA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0046695 "SLIK (SAGA-like)
complex" evidence=IDA] [GO:0000124 "SAGA complex" evidence=IDA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IDA]
[GO:0034401 "regulation of transcription by chromatin organization"
evidence=IGI;IMP] [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=IDA] [GO:0001178 "regulation of transcriptional start site
selection at RNA polymerase II promoter" evidence=IGI] [GO:2000616
"negative regulation of histone H3-K9 acetylation" evidence=IMP]
[GO:0071441 "negative regulation of histone H3-K14 acetylation"
evidence=IMP] [GO:0006368 "transcription elongation from RNA
polymerase II promoter" evidence=IGI;IPI] [GO:0000790 "nuclear
chromatin" evidence=IDA] [GO:0031490 "chromatin DNA binding"
evidence=IDA] [GO:0016584 "nucleosome positioning"
evidence=IGI;IDA] [GO:0003677 "DNA binding" evidence=IEA;IDA]
[GO:0006369 "termination of RNA polymerase II transcription"
evidence=IGI;IMP] [GO:0071894 "histone H2B conserved C-terminal
lysine ubiquitination" evidence=IMP] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0016568 "chromatin
modification" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0035064 "methylated histone residue binding" evidence=IDA]
[GO:2000104 "negative regulation of DNA-dependent DNA replication"
evidence=IGI] [GO:0006363 "termination of RNA polymerase I
transcription" evidence=IGI] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR009057 Pfam:PF00176 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298
SMART:SM00490 SGD:S000000966 Pfam:PF00385 GO:GO:0005739
GO:GO:0005524 GO:GO:2000104 Gene3D:1.10.10.60 SUPFAM:SSF46689
EMBL:BK006939 GO:GO:0000124 GO:GO:0046695 GO:GO:0004386
GO:GO:0034401 GO:GO:0006368 GO:GO:0035064 GO:GO:0031490
GO:GO:0042766 InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043044
GO:GO:0016584 EMBL:U18917 InterPro:IPR023780 InterPro:IPR023779
PROSITE:PS00598 GO:GO:0006363 GO:GO:0008094 GO:GO:0006369
InterPro:IPR025260 Pfam:PF13907 GeneTree:ENSGT00560000076896
KO:K11367 HOGENOM:HOG000207917 PIR:S30818 RefSeq:NP_011091.1
PDB:2DY7 PDB:2DY8 PDB:2H1E PDB:2XB0 PDB:3MWY PDB:3TED PDBsum:2DY7
PDBsum:2DY8 PDBsum:2H1E PDBsum:2XB0 PDBsum:3MWY PDBsum:3TED
ProteinModelPortal:P32657 SMR:P32657 DIP:DIP-6362N IntAct:P32657
MINT:MINT-618890 STRING:P32657 PaxDb:P32657 PeptideAtlas:P32657
EnsemblFungi:YER164W GeneID:856911 KEGG:sce:YER164W CYGD:YER164w
OMA:IKWQFMA OrthoDB:EOG4TF3TB SABIO-RK:P32657
EvolutionaryTrace:P32657 NextBio:983353 Genevestigator:P32657
GermOnline:YER164W GO:GO:0030874 GO:GO:0000182 GO:GO:0071441
GO:GO:2000616 GO:GO:0001178 Uniprot:P32657
Length = 1468
Score = 1101 (392.6 bits), Expect = 4.1e-119, Sum P(2) = 4.1e-119
Identities = 256/580 (44%), Positives = 346/580 (59%)
Query: 659 ERWKQPQRVI-SLRSS-KDGTREA--FVKWTGLPYDECTWEKLDEP---ALEKYSHLTDL 711
E + P+R+I S R+S +DGT + VKW L YDE TWE + A E+ H
Sbjct: 282 EEFHVPERIIDSQRASLEDGTSQLQYLVKWRRLNYDEATWENATDIVKLAPEQVKH---- 337
Query: 712 FVQFERQTLKKDASEDELPRGKGDCQQSEIVALTEQPEELKGGALFPHQLEALNWLRKCW 771
F E + S + Q+ L+ QP +KGG L QL +NW+ W
Sbjct: 338 FQNRENSKILPQYSSNYTS------QRPRFEKLSVQPPFIKGGELRDFQLTGINWMAFLW 391
Query: 772 HKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLSTMPNWLAEFALWAPNL 831
K N ILADEMGLGKTV AFIS L + P +++VPLSTMP WL F WAP+L
Sbjct: 392 SKGDNGILADEMGLGKTVQTVAFISWLIFARRQNGPHIIVVPLSTMPAWLDTFEKWAPDL 451
Query: 832 NVVEYHGCAKARAIIRQYEWHASDPDNLNKKTSSYKFNVLLTTYEMILADSSHLRGVPWE 891
N + Y G K+R IR+YE++ ++P KKT KFNVLLTTYE IL D + L + W+
Sbjct: 452 NCICYMGNQKSRDTIREYEFY-TNPRAKGKKTM--KFNVLLTTYEYILKDRAELGSIKWQ 508
Query: 892 VLVVDEGHRXXXXXXXXXXXXXXXXXQHRVLLTGTPLQNNIGEMYNLLNFLQPASFPSLS 951
+ VDE HR +R+L+TGTPLQNNI E+ L+NFL P F
Sbjct: 509 FMAVDEAHRLKNAESSLYESLNSFKVANRMLITGTPLQNNIKELAALVNFLMPGRFTIDQ 568
Query: 952 SFEEKFNDLTTTQKVEELKKLVAPHMLRRLKKDAMQNIPPKTERMVPVELSSIQAEYYRA 1011
+ + D + + +L + + P +LRRLKKD +++P KTER++ VELS +Q EYY+
Sbjct: 569 EIDFENQDEEQEEYIHDLHRRIQPFILRRLKKDVEKSLPSKTERILRVELSDVQTEYYKN 628
Query: 1012 MLTKNYQILRNIGKGVAQQSMLNIVMQLRKVCNHPYLIPGTEP----DSGSVEFLHE--M 1065
+LTKNY L KG S+LNI+ +L+K NHPYL E G + E +
Sbjct: 629 ILTKNYSALTAGAKG-GHFSLLNIMNELKKASNHPYLFDNAEERVLQKFGDGKMTRENVL 687
Query: 1066 R--IKASAKLTLLHSMLKVLYKEGHRVLIFSQMTKLLDILEDYLNIEFGPKTYERVDGSV 1123
R I +S K+ LL +L L K+GHRVLIFSQM ++LDIL DYL+I+ G ++R+DG+V
Sbjct: 688 RGLIMSSGKMVLLDQLLTRLKKDGHRVLIFSQMVRMLDILGDYLSIK-GIN-FQRLDGTV 745
Query: 1124 SVGDRQAAITRFNQ-DKSRFVFLLSTRSCGLGINLATADTVIIYDSDFNPHADIQAMNRA 1182
R+ +I FN D + FVFLLSTR+ GLGINL TADTV+I+DSD+NP AD+QAM RA
Sbjct: 746 PSAQRRISIDHFNSPDSNDFVFLLSTRAGGLGINLMTADTVVIFDSDWNPQADLQAMARA 805
Query: 1183 HRIGQSKRLLVYRLVVRASVEERILQLAKKKLMLDQLFVN 1222
HRIGQ ++VYRLV + +VEE +L+ A+KK++L+ ++
Sbjct: 806 HRIGQKNHVMVYRLVSKDTVEEEVLERARKKMILEYAIIS 845
Score = 92 (37.4 bits), Expect = 4.1e-119, Sum P(2) = 4.1e-119
Identities = 47/221 (21%), Positives = 93/221 (42%)
Query: 428 TDDRHSDDFLVSENHNKILEENLACDTDLDAEVTENLAELSPNVIRSSDEECMKNDIGVD 487
+DD +D + ++ D D E E+ E D++ + I +
Sbjct: 36 SDDEDDEDNIKQSRRKRMTTIEDDEDEFEDEEGEEDSGEDEDEEDFEEDDDYYGSPIKQN 95
Query: 488 RIQVYRRSVTK-ECKVTKECKGENAIDL-LREDDKDSDPVAVNGKVQDESAVSTEDLGER 545
R + R+ +K + K + + ++ + + R ++ + V N D+ + +ED +
Sbjct: 96 RSKPKSRTKSKSKSKPKSQSEKQSTVKIPTRFSNRQNKTVNYNIDYSDDDLLESED--DY 153
Query: 546 NDKMVVEDADVSLRDNEGLTVSEIHITCESTDKDVDVGKKTSGSVAKRVQEPAVTESAQV 605
+ + + +V + + H D ++ KTS K V E V +
Sbjct: 154 GSEEALSEENVH-EASANPQPEDFH----GIDIVINHRLKTSLEEGK-VLEKTVPDLNNC 207
Query: 606 KGKAVSYEFLVKWVGKSNIHNSWIP-ESQLKVLAKRKLENY 645
K +YEFL+KW +S++HN+W ES +V ++L+NY
Sbjct: 208 KE---NYEFLIKWTDESHLHNTWETYESIGQVRGLKRLDNY 245
Score = 39 (18.8 bits), Expect = 1.6e-113, Sum P(2) = 1.6e-113
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 667 VISLRSSKDGTREAFVKWTGLPYDECTWE 695
V L + K+ E +KWT + TWE
Sbjct: 201 VPDLNNCKENY-EFLIKWTDESHLHNTWE 228
>UNIPROTKB|F1MGF2 [details] [associations]
symbol:CHD1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0035064 "methylated histone residue binding"
evidence=IEA] [GO:0006338 "chromatin remodeling" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
GO:GO:0006338 GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
InterPro:IPR023779 PROSITE:PS00598 InterPro:IPR025260 Pfam:PF13907
GeneTree:ENSGT00560000076896 OMA:AETHENE EMBL:DAAA02021391
EMBL:DAAA02021392 IPI:IPI00717393 UniGene:Bt.105262
Ensembl:ENSBTAT00000034967 NextBio:20866990 Uniprot:F1MGF2
Length = 1810
Score = 1042 (371.9 bits), Expect = 4.6e-119, Sum P(4) = 4.6e-119
Identities = 236/562 (41%), Positives = 336/562 (59%)
Query: 669 SLRSSKDGTREAFVKWTGLPYDECTWEKLDEPAL-EKYSHLTDLFVQFERQTLKKDASED 727
S + S G + + KW GLPY EC+WE D + +K+ D + F R K +D
Sbjct: 410 SNQKSAAGYPDYYCKWQGLPYSECSWE--DGALISKKFQACIDEY--FSRNQSKTTPFKD 465
Query: 728 ELPRGKGDCQQSEIVALTEQPEELKG--GA-LFPHQLEALNWLRKCWHKSKNVILADEMG 784
K Q+ VAL +QP + G G L +QL LNWL W K + ILADEMG
Sbjct: 466 ----CKVLKQRPRFVALKKQPSYIGGHEGLELRDYQLNGLNWLAHSWCKGNSCILADEMG 521
Query: 785 LGKTVSACAFISSLYCEFKAKLPCLVLVPLSTMPNWLAEFALWAPNLNVVEYHGCAKARA 844
LGKT+ +F++ L+ E + P L++VPLST+ +W E WA +N V Y G +R
Sbjct: 522 LGKTIQTISFLNYLFHEHQLYGPFLLVVPLSTLTSWQREIQTWASQMNAVVYLGDINSRN 581
Query: 845 IIRQYEWHASDPDNLNKKTSSYKFNVLLTTYEMILADSSHLRGVPWEVLVVDEGHRXXXX 904
+IR +EW ++ +T KFN+LLTTYE++L D + L G+ W + VDE HR
Sbjct: 582 MIRTHEW-------MHPQTKRLKFNILLTTYEILLKDKAFLGGLNWAFIGVDEAHRLKND 634
Query: 905 XXXXXXXXXXXXXQHRVLLTGTPLQNNIGEMYNLLNFLQPASFPSLSSFEEKFNDLTTTQ 964
HR+L+TGTPLQN++ E+++LL+F+ P F S FEE+
Sbjct: 635 DSLLYKTLIDFKSNHRLLITGTPLQNSLKELWSLLHFIMPEKFSSWEDFEEEHGK-GREY 693
Query: 965 KVEELKKLVAPHMLRRLKKDAMQNIPPKTERMVPVELSSIQAEYYRAMLTKNYQILRNIG 1024
L K + P +LRR+KKD +++P K E+++ +E+S++Q +YY+ +LT+NY+ L
Sbjct: 694 GYASLHKELEPFLLRRVKKDVEKSLPAKVEQILRMEMSALQKQYYKWILTRNYKALSKGS 753
Query: 1025 KGVAQQSMLNIVMQLRKVCNHPYLI--PGTEPDSGSVEFLHEMRIKASAKLTLLHSMLKV 1082
KG + LNI+M+L+K CNH YLI P E L + I++S KL LL +L
Sbjct: 754 KG-STSGFLNIMMELKKCCNHCYLIKPPDNNEFYNKQEALQHL-IRSSGKLILLDKLLIR 811
Query: 1083 LYKEGHRVLIFSQMTKLLDILEDYLNIEFGPKTYERVDGSVSVGDRQAAITRFNQDKSR- 1141
L + G+RVLIFSQM ++LDIL +YL P ++R+DGS+ R+ A+ FN + S
Sbjct: 812 LRERGNRVLIFSQMVRMLDILAEYLKYRQFP--FQRLDGSIKGELRKQALDHFNAEGSED 869
Query: 1142 FVFLLSTRSCGLGINLATADTVIIYDSDFNPHADIQAMNRAHRIGQSKRLLVYRLVVRAS 1201
F FLLSTR+ GLGINLA+ADTV+I+DSD+NP D+QA RAHRIGQ K++ +YRLV + S
Sbjct: 870 FCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGS 929
Query: 1202 VEERILQLAKKKLMLDQLFVNK 1223
VEE IL+ AKKK++LD L + +
Sbjct: 930 VEEDILERAKKKMVLDHLVIQR 951
Score = 106 (42.4 bits), Expect = 4.6e-119, Sum P(4) = 4.6e-119
Identities = 52/184 (28%), Positives = 84/184 (45%)
Query: 475 SDEECMKNDIGVDRIQVYRRSVTKECKVTKECKGENAIDLLREDDKDSDPVAVNGKVQDE 534
SD E KN + + Q RS +K K K + ID E+D D + N K +
Sbjct: 178 SDYE-PKNKVKSRKPQ--NRSKSKNGKKIIGQK-KRQIDSSEEEDDDEEEYD-NDK-RSS 231
Query: 535 SAVSTEDLGERNDKMVVEDADVSLRD-NEGLTVSEIHITCESTDKDVD--VGKK-TSGSV 590
+T ++ + D+ + D+D L E + E E+ ++ +D +G+K +G+
Sbjct: 232 RRQATVNVSYKEDEEMKTDSDDLLEVCGEDVPQPEEE-EFETIERFMDCRIGRKGATGAT 290
Query: 591 AK--RVQEPAVTESAQVKGKAVS-YEFLVKWVGKSNIHNSWIPESQLK---VLAKRKLEN 644
V+ + K K ++L+KW G S+IHN+W E LK V +KL+N
Sbjct: 291 TTIYAVEADGDPNAGFEKNKEPGEIQYLIKWKGWSHIHNTWETEETLKQQNVRGMKKLDN 350
Query: 645 YKAK 648
YK K
Sbjct: 351 YKKK 354
Score = 60 (26.2 bits), Expect = 4.6e-119, Sum P(4) = 4.6e-119
Identities = 18/57 (31%), Positives = 30/57 (52%)
Query: 1226 SQKEVEDILRWGTEELFNDSPGINGKDMGENNTSIEEAVRDLEQKHRKRGGGL--GD 1280
+++E+ IL++G EELF + P G++ I+E ++ E H G L GD
Sbjct: 973 NKEELSAILKFGAEELFKE-P--EGEEQEPQEMDIDEILKRAET-HENEAGPLTVGD 1025
Score = 51 (23.0 bits), Expect = 3.5e-110, Sum P(3) = 3.5e-110
Identities = 36/168 (21%), Positives = 65/168 (38%)
Query: 148 SQSGVKSS--GADKVSQIFGNSILARKRSNKGKSVLALGVKSLEKSLDSSQVDVSCSTKP 205
SQSG S G++ SQ S +R + K G + + S V S K
Sbjct: 45 SQSGSSDSDSGSESGSQSESESDNSRDNKVQAKPPKVDGAEFWKSSPSILAVQRSAMLKK 104
Query: 206 ENTSAGVPVEGSSSCPNDDDEKQLNASPTDSLADTKFHPAEEVLPHSQVTKSEQ-NDEVP 264
+ S+S +D ++ + S K H E+ + S+ +D
Sbjct: 105 QQQQQQQHQASSNSGSEEDSSSSEDSDDSSSEVKRKKHKDEDWQMSGSGSPSQSGSDSES 164
Query: 265 VEKHEKSSTNGS-SGIKFVLAIGASE-RDRKRKPEVKDEDSQKKLRVD 310
E+ +KSS + + S + + + + ++R + K QKK ++D
Sbjct: 165 EEERDKSSCDETESDYEPKNKVKSRKPQNRSKSKNGKKIIGQKKRQID 212
Score = 50 (22.7 bits), Expect = 4.6e-119, Sum P(4) = 4.6e-119
Identities = 15/55 (27%), Positives = 31/55 (56%)
Query: 5 SSSTSTMINRNWVLKRKRRKLPCGPGLSN-GKEENLVTSESPRNTPSAKRRLKNE 58
SS + + R+ +LK+++++ SN G EE+ +SE ++ S +R K++
Sbjct: 89 SSPSILAVQRSAMLKKQQQQQQQHQASSNSGSEEDSSSSEDSDDSSSEVKRKKHK 143
Score = 45 (20.9 bits), Expect = 1.5e-109, Sum P(3) = 1.5e-109
Identities = 13/61 (21%), Positives = 30/61 (49%)
Query: 19 KRKRRKLPCGPGLSNGKEENLVTSESPRNTPSAK--RRLKNEINADRSSTKKKGNDGYYY 76
+ +R K C S+ + +N V S P+N +K +++ + S++++ +D Y
Sbjct: 165 EEERDKSSCDETESDYEPKNKVKSRKPQNRSKSKNGKKIIGQKKRQIDSSEEEDDDEEEY 224
Query: 77 E 77
+
Sbjct: 225 D 225
Score = 44 (20.5 bits), Expect = 2.0e-118, Sum P(4) = 2.0e-118
Identities = 13/48 (27%), Positives = 23/48 (47%)
Query: 189 EKSLDSSQVDVSCSTKPENTSAGVPVEGSSSCPNDDDEKQLNASPTDS 236
E+S+ +S + S S +++G SS +D Q +S +DS
Sbjct: 7 EESVRNSSGESSQSDDDSGSASGSGSGSSSGSSSDGSSSQSGSSDSDS 54
Score = 42 (19.8 bits), Expect = 3.2e-118, Sum P(4) = 3.2e-118
Identities = 17/52 (32%), Positives = 26/52 (50%)
Query: 193 DSSQVDV---SCSTKPENTSAGVPVEGSSSCP--NDDDEKQLNASPTDSLAD 239
+SSQ D S S +S+G +GSSS +D D + S ++S +D
Sbjct: 16 ESSQSDDDSGSASGSGSGSSSGSSSDGSSSQSGSSDSDSGSESGSQSESESD 67
>UNIPROTKB|O14646 [details] [associations]
symbol:CHD1 "Chromodomain-helicase-DNA-binding protein 1"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006338 "chromatin remodeling"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0035064 "methylated histone residue
binding" evidence=IDA] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=TAS] [GO:0006357 "regulation of transcription
from RNA polymerase II promoter" evidence=TAS] [GO:0005515 "protein
binding" evidence=IPI] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
GO:GO:0003677 GO:GO:0006357 GO:GO:0006351 GO:GO:0006338
GO:GO:0004003 GO:GO:0035064 InterPro:IPR016197 SUPFAM:SSF54160
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
HOVERGEN:HBG005325 InterPro:IPR025260 Pfam:PF13907 CTD:1105
KO:K11367 EMBL:AF006513 EMBL:AC022121 EMBL:BC117134 IPI:IPI00297851
IPI:IPI00954192 RefSeq:NP_001261.2 UniGene:Hs.643465 PDB:2B2T
PDB:2B2U PDB:2B2V PDB:2B2W PDB:2B2Y PDB:4B4C PDBsum:2B2T
PDBsum:2B2U PDBsum:2B2V PDBsum:2B2W PDBsum:2B2Y PDBsum:4B4C
ProteinModelPortal:O14646 SMR:O14646 IntAct:O14646 STRING:O14646
PhosphoSite:O14646 PaxDb:O14646 PRIDE:O14646
Ensembl:ENST00000284049 GeneID:1105 KEGG:hsa:1105 UCSC:uc003knf.3
GeneCards:GC05M098219 H-InvDB:HIX0005061 HGNC:HGNC:1915
HPA:HPA022236 MIM:602118 neXtProt:NX_O14646 PharmGKB:PA26451
HOGENOM:HOG000207917 InParanoid:O14646 OMA:AETHENE
OrthoDB:EOG4PG601 PhylomeDB:O14646 DrugBank:DB00445
EvolutionaryTrace:O14646 GenomeRNAi:1105 NextBio:4580
ArrayExpress:O14646 Bgee:O14646 CleanEx:HS_CHD1
Genevestigator:O14646 GermOnline:ENSG00000153922 Uniprot:O14646
Length = 1710
Score = 1107 (394.7 bits), Expect = 6.6e-119, Sum P(3) = 6.6e-119
Identities = 298/810 (36%), Positives = 430/810 (53%)
Query: 457 DAEVTENLAELSPNVIRSSDEECMKNDIGVDRIQVYRRSVTKECKVTKECKGENAIDLLR 516
D+E E + S + S E KN + + Q RS +K K K + ID
Sbjct: 163 DSESEEEREKSSCDETESDYEP--KNKVKSRKPQ--NRSKSKNGKKILGQK-KRQIDSSE 217
Query: 517 EDDKDSD----------PVAVNGKVQDESAVSTEDLGERNDKMVVEDADVSLRDNEGLTV 566
EDD + D VN +++ + T+ +D + V DV + E
Sbjct: 218 EDDDEEDYDNDKRSSRRQATVNVSYKEDEEMKTDS----DDLLEVCGEDVPQPEEEEFET 273
Query: 567 SEIHITCESTDKDVDVGKKTSGSVAKRVQEP-AVTESAQVKGKAVSYEFLVKWVGKSNIH 625
E + C K G T+ + +P A E + G+ ++L+KW G S+IH
Sbjct: 274 IERFMDCRIGRKGA-TGATTTIYAVEADGDPNAGFEKNKEPGEI---QYLIKWKGWSHIH 329
Query: 626 NSWIPESQLK---VLAKRKLENYKAK-----------------YGTTVINICDERWKQPQ 665
N+W E LK V +KL+NYK K Y + D+ KQ Q
Sbjct: 330 NTWETEETLKQQNVRGMKKLDNYKKKDQETKRWLKNASPEDVEYYNCQQELTDDLHKQYQ 389
Query: 666 ---RVISLRSSKD--GTREAFVKWTGLPYDECTWEKLDEPAL-EKYSHLTDLFVQFERQT 719
R+I+ + K G + + KW GLPY EC+WE D + +K+ D + F R
Sbjct: 390 IVERIIAHSNQKSAAGYPDYYCKWQGLPYSECSWE--DGALISKKFQACIDEY--FSRNQ 445
Query: 720 LKKDASEDELPRGKGDCQQSEIVALTEQPEELKG--GA-LFPHQLEALNWLRKCWHKSKN 776
K +D K Q+ VAL +QP + G G L +QL LNWL W K +
Sbjct: 446 SKTTPFKD----CKVLKQRPRFVALKKQPSYIGGHEGLELRDYQLNGLNWLAHSWCKGNS 501
Query: 777 VILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLSTMPNWLAEFALWAPNLNVVEY 836
ILADEMGLGKT+ +F++ L+ E + P L++VPLST+ +W E WA +N V Y
Sbjct: 502 CILADEMGLGKTIQTISFLNYLFHEHQLYGPFLLVVPLSTLTSWQREIQTWASQMNAVVY 561
Query: 837 HGCAKARAIIRQYEWHASDPDNLNKKTSSYKFNVLLTTYEMILADSSHLRGVPWEVLVVD 896
G +R +IR +EW + +T KFN+LLTTYE++L D + L G+ W + VD
Sbjct: 562 LGDINSRNMIRTHEW-------THHQTKRLKFNILLTTYEILLKDKAFLGGLNWAFIGVD 614
Query: 897 EGHRXXXXXXXXXXXXXXXXXQHRVLLTGTPLQNNIGEMYNLLNFLQPASFPSLSSFEEK 956
E HR HR+L+TGTPLQN++ E+++LL+F+ P F S FEE+
Sbjct: 615 EAHRLKNDDSLLYKTLIDFKSNHRLLITGTPLQNSLKELWSLLHFIMPEKFSSWEDFEEE 674
Query: 957 FNDLTTTQKVEELKKLVAPHMLRRLKKDAMQNIPPKTERMVPVELSSIQAEYYRAMLTKN 1016
L K + P +LRR+KKD +++P K E+++ +E+S++Q +YY+ +LT+N
Sbjct: 675 HGK-GREYGYASLHKELEPFLLRRVKKDVEKSLPAKVEQILRMEMSALQKQYYKWILTRN 733
Query: 1017 YQILRNIGKGVAQQSMLNIVMQLRKVCNHPYLI--PGTEPDSGSVEFLHEMRIKASAKLT 1074
Y+ L KG + LNI+M+L+K CNH YLI P E L + I++S KL
Sbjct: 734 YKALSKGSKG-STSGFLNIMMELKKCCNHCYLIKPPDNNEFYNKQEALQHL-IRSSGKLI 791
Query: 1075 LLHSMLKVLYKEGHRVLIFSQMTKLLDILEDYLNIEFGPKTYERVDGSVSVGDRQAAITR 1134
LL +L L + G+RVLIFSQM ++LDIL +YL P ++R+DGS+ R+ A+
Sbjct: 792 LLDKLLIRLRERGNRVLIFSQMVRMLDILAEYLKYRQFP--FQRLDGSIKGELRKQALDH 849
Query: 1135 FNQDKSR-FVFLLSTRSCGLGINLATADTVIIYDSDFNPHADIQAMNRAHRIGQSKRLLV 1193
FN + S F FLLSTR+ GLGINLA+ADTV+I+DSD+NP D+QA RAHRIGQ K++ +
Sbjct: 850 FNAEGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNI 909
Query: 1194 YRLVVRASVEERILQLAKKKLMLDQLFVNK 1223
YRLV + SVEE IL+ AKKK++LD L + +
Sbjct: 910 YRLVTKGSVEEDILERAKKKMVLDHLVIQR 939
Score = 63 (27.2 bits), Expect = 6.6e-119, Sum P(3) = 6.6e-119
Identities = 29/118 (24%), Positives = 44/118 (37%)
Query: 191 SLDSSQVDVSCSTKPENTSAGVPVEGSSSCPNDDD--EKQLNASP--TDSLADTKFHPAE 246
S S D S S + S GS S D E ++ A P D K P+
Sbjct: 34 SSSGSSSDGSSSQSGSSDSDSGSESGSQSESESDTSRENKVQAKPPKVDGAEFWKSSPSI 93
Query: 247 EVLPHSQVTKSEQNDEVPVEKHEKSSTNGSSGIKFVLAIGASERDRKRKPEVKDEDSQ 304
+ S + K +Q + ++H+ SS +GS ++ + KDED Q
Sbjct: 94 LAVQRSAILKKQQQQQQQ-QQHQASSNSGSEEDSSSSEDSDDSSSEVKRKKHKDEDWQ 150
Score = 58 (25.5 bits), Expect = 6.6e-119, Sum P(3) = 6.6e-119
Identities = 18/57 (31%), Positives = 30/57 (52%)
Query: 1226 SQKEVEDILRWGTEELFNDSPGINGKDMGENNTSIEEAVRDLEQKHRKRGGGL--GD 1280
+++E+ IL++G EELF + P G++ I+E ++ E H G L GD
Sbjct: 961 NKEELSAILKFGAEELFKE-P--EGEEQEPQEMDIDEILKRAET-HENEPGPLTVGD 1013
Score = 52 (23.4 bits), Expect = 9.5e-118, Sum P(3) = 9.5e-118
Identities = 37/170 (21%), Positives = 68/170 (40%)
Query: 148 SQSGVKSS--GADKVSQIFGNSILARKRSNKGKSVLALGVKSLEKSLDSSQVDVSCSTKP 205
SQSG S G++ SQ S +R+ + K G + + S V S K
Sbjct: 45 SQSGSSDSDSGSESGSQSESESDTSRENKVQAKPPKVDGAEFWKSSPSILAVQRSAILKK 104
Query: 206 ENTSAGVPVEGSSSCPNDDDEKQLNASPTDSLADTKF--HPAEEVLPHSQVTKSEQ-NDE 262
+ +SS +++ + DS ++ K H E+ + S+ +D
Sbjct: 105 QQQQQQQQQHQASSNSGSEEDSSSSEDSDDSSSEVKRKKHKDEDWQMSGSGSPSQSGSDS 164
Query: 263 VPVEKHEKSSTNGS-SGIKFVLAIGASE-RDRKRKPEVKDEDSQKKLRVD 310
E+ EKSS + + S + + + + ++R + K QKK ++D
Sbjct: 165 ESEEEREKSSCDETESDYEPKNKVKSRKPQNRSKSKNGKKILGQKKRQID 214
Score = 47 (21.6 bits), Expect = 3.2e-117, Sum P(3) = 3.2e-117
Identities = 18/53 (33%), Positives = 27/53 (50%)
Query: 193 DSSQVDV---SCSTKPENTSAGVPVEGSSSCP--NDDDEKQLNASPTDSLADT 240
+SSQ D S S +S+G +GSSS +D D + S ++S +DT
Sbjct: 16 ESSQSDDDSGSASGSGSGSSSGSSSDGSSSQSGSSDSDSGSESGSQSESESDT 68
Score = 44 (20.5 bits), Expect = 6.6e-117, Sum P(3) = 6.6e-117
Identities = 11/38 (28%), Positives = 18/38 (47%)
Query: 19 KRKRRKLPCGPGLSNGKEENLVTSESPRNTPSAKRRLK 56
+ +R K C S+ + +N V S P+N +K K
Sbjct: 167 EEEREKSSCDETESDYEPKNKVKSRKPQNRSKSKNGKK 204
Score = 44 (20.5 bits), Expect = 6.6e-117, Sum P(3) = 6.6e-117
Identities = 13/48 (27%), Positives = 23/48 (47%)
Query: 189 EKSLDSSQVDVSCSTKPENTSAGVPVEGSSSCPNDDDEKQLNASPTDS 236
E+S+ +S + S S +++G SS +D Q +S +DS
Sbjct: 7 EESVRNSSGESSQSDDDSGSASGSGSGSSSGSSSDGSSSQSGSSDSDS 54
Score = 41 (19.5 bits), Expect = 1.4e-116, Sum P(3) = 1.4e-116
Identities = 15/57 (26%), Positives = 31/57 (54%)
Query: 5 SSSTSTMINRNWVLKRKRRKLPCGP--GLSN-GKEENLVTSESPRNTPSAKRRLKNE 58
SS + + R+ +LK+++++ SN G EE+ +SE ++ S +R K++
Sbjct: 89 SSPSILAVQRSAILKKQQQQQQQQQHQASSNSGSEEDSSSSEDSDDSSSEVKRKKHK 145
Score = 38 (18.4 bits), Expect = 8.4e-117, Sum P(3) = 8.4e-117
Identities = 8/35 (22%), Positives = 19/35 (54%)
Query: 1239 EELFNDSPGINGKDMGENNTSIEEAVRDLEQKHRK 1273
EE+ +DS + + E++ + E+ D ++ +K
Sbjct: 1349 EEIKSDSSPLPSEKSDEDDDKLSESKSDGRERSKK 1383
>UNIPROTKB|E1BS47 [details] [associations]
symbol:CHD7 "Chromodomain-helicase-DNA-binding protein 7"
species:9031 "Gallus gallus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001005
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013
PROSITE:PS51194 SMART:SM00298 SMART:SM00490 SMART:SM00717
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
GO:GO:0003682 GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
GeneTree:ENSGT00560000077077 EMBL:AADN02022009 EMBL:AADN02022010
IPI:IPI00598234 Ensembl:ENSGALT00000005903 ArrayExpress:E1BS47
Uniprot:E1BS47
Length = 1326
Score = 1150 (409.9 bits), Expect = 1.1e-118, Sum P(2) = 1.1e-118
Identities = 272/684 (39%), Positives = 383/684 (55%)
Query: 613 EFLVKWVGKSNIHNSW--IPESQLKVLAKRKLENYKAKYGTT--VINICDERWK----QP 664
EF VK+ S +H W + E ++K++ +KAK G + I DE + +
Sbjct: 11 EFYVKYKNFSYLHCQWASVEELDKDKRIQQKIKRFKAKQGQNKFLSEIDDELFNPDYVEI 70
Query: 665 QRVISLRSSKDGTREA----FVKWTGLPYDECTWEKLDEPALEKYSHLTDLFVQFERQTL 720
R++ S D E VKW LPY++ TWE + K +FE+ +
Sbjct: 71 DRILDFSRSTDDNGEPVTHYLVKWCSLPYEDSTWELKQDIDQAKIE-------EFEK-LM 122
Query: 721 KKDASEDELPRGKGDCQQSEIVALTEQPEELKGG-ALFPHQLEALNWLRKCWHKSKNVIL 779
++ + + R D + +E E K L +QLE +NWL W+ ++N IL
Sbjct: 123 SREPEMERVERPPADDWKK-----SESSREYKNNNKLREYQLEGVNWLLFNWYNTRNCIL 177
Query: 780 ADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLSTMPNWLAEFALWAPNLNVVEYHGC 839
ADEMGLGKT+ + F+ +Y + P LV+ PLST+PNW EF W LNVV YHG
Sbjct: 178 ADEMGLGKTIQSITFLYEIYLK-GIHGPFLVIAPLSTIPNWEREFRTWT-ELNVVVYHGS 235
Query: 840 AKARAIIRQYEWHASDPDNLNKKTSSYKFNVLLTTYEMILADSSHLRGVPWEVLVVDEGH 899
+R I+ YE + DP K SYKF+ ++TT+EMIL D LR +PW +V+DE H
Sbjct: 236 QASRRTIQLYEMYFKDPQGRVIK-GSYKFHAIITTFEMILTDCPELRNIPWRCVVIDEAH 294
Query: 900 RXXXXXXXXXXXXXXXXXQHRVLLTGTPLQNNIGEMYNLLNFLQPASFPSLSSFEEKFND 959
R +H+VLLTGTPLQN + E+++LL+FL+P FPS ++F ++F D
Sbjct: 295 RLKNRNCKLLEGLKMMDLEHKVLLTGTPLQNTVEELFSLLHFLEPGRFPSETTFMQEFGD 354
Query: 960 LTTTQKVEELKKLVAPHMLRRLKKDAMQNIPPKTERMVPVELSSIQAEYYRAMLTKNYQI 1019
L T ++V++L+ ++ P MLRRLK+D +N+ PK E ++ VEL++IQ +YYRA+L KN+
Sbjct: 355 LKTEEQVQKLQAILKPMMLRRLKEDVEKNLAPKEETIIEVELTNIQKKYYRAILEKNFAF 414
Query: 1020 LRNIGKGVAQQSMLNIVMQLRKVCNHPYLIPGTEP----------DSGSVEFLHEMRIKA 1069
L G ++LN +M+LRK CNHPYLI G E ++ S +F + I+A
Sbjct: 415 LSKGGGQANVPNLLNTMMELRKCCNHPYLINGAEEKILEEFKETHNADSPDFQLQAMIQA 474
Query: 1070 SAKLTLLHSMLKVLYKEGHRVLIFSQMTKLLDILEDYLNIEFGPKTYERVDGSVSVGDRQ 1129
+ KL L+ +L L GHRVLIFSQM + LDILEDYL P YER+DG V RQ
Sbjct: 475 AGKLVLIDKLLPKLKAGGHRVLIFSQMVRCLDILEDYLIQRRYP--YERIDGRVRGNLRQ 532
Query: 1130 AAITRFNQ-DKSRFVFLLSTRSCGLGINLATADTVIIYDSDFNPHADIQAMNRAHRIGQS 1188
AAI RF++ D RFVFLL TR+ GLGINL ADT II+DSD+NP D+QA R HRIGQS
Sbjct: 533 AAIDRFSRPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQS 592
Query: 1189 KRLLVYRLVVRASVEERILQLAKKKLMLDQLFVNK-SGSQKEVEDILRWGTEELFND--S 1245
K + +YRL+ R S E + A KL LD+ + SG + + + +E+ D
Sbjct: 593 KSVKIYRLITRNSYEREMFDKASLKLGLDKAVLQSMSGRENATNGVQQLSKKEI-EDLLR 651
Query: 1246 PGINGKDMGENNTSIEEAVRDLEQ 1269
G G M E + + D++Q
Sbjct: 652 KGAYGALMDEEDEGSKFCEEDIDQ 675
Score = 39 (18.8 bits), Expect = 1.1e-118, Sum P(2) = 1.1e-118
Identities = 10/39 (25%), Positives = 21/39 (53%)
Query: 1288 EGSTKIVWDENAIARLLDRSNLQSGSTDLAEGDLENDML 1326
+ S K+ D+ + + R N +G L++ ++E D+L
Sbjct: 613 KASLKLGLDKAVLQSMSGRENATNGVQQLSKKEIE-DLL 650
>ZFIN|ZDB-GENE-050419-256 [details] [associations]
symbol:chd2 "chromodomain helicase DNA binding
protein 2" species:7955 "Danio rerio" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 ZFIN:ZDB-GENE-050419-256
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0004386
InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR023780 InterPro:IPR023779
PROSITE:PS00598 InterPro:IPR025260 Pfam:PF13907
GeneTree:ENSGT00560000076896 EMBL:BX649578 IPI:IPI00999128
Ensembl:ENSDART00000127730 ArrayExpress:E7F7R2 Bgee:E7F7R2
Uniprot:E7F7R2
Length = 1813
Score = 1045 (372.9 bits), Expect = 1.7e-118, Sum P(3) = 1.7e-118
Identities = 240/609 (39%), Positives = 351/609 (57%)
Query: 626 NSWI----PESQLKVLAKRKLENYKAKYGTTVINICDERWKQPQRVISLRSSKD--GTRE 679
N+W+ PE +++L N +K + + R + Q S K G E
Sbjct: 358 NAWLKKASPEDLEYYNCQQELTNDLSKQFQIIERVIATRTGKSQATSDTPSHKSSSGEPE 417
Query: 680 AFVKWTGLPYDECTWEKLDEPALEK-YSHLTDLFVQFERQTLKKDASEDELPRGKGDCQQ 738
KW GLPY ECTWE D ++K + D F R + K S+D K Q+
Sbjct: 418 YLCKWMGLPYAECTWE--DSALIKKKFQACIDSF--HNRNSSKTVPSKD----CKVLKQR 469
Query: 739 SEIVALTEQPEEL--KGGALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFIS 796
V L +QP + + L +QL+ +NWL W + +VILADEMGLGKT+ +F+S
Sbjct: 470 PRFVPLKKQPSYIGDENLELRDYQLDGVNWLAHSWCRCNSVILADEMGLGKTIQTISFLS 529
Query: 797 SLYCEFKAKLPCLVLVPLSTMPNWLAEFALWAPNLNVVEYHGCAKARAIIRQYEWHASDP 856
L+ + + P +V+VPLST+ +W EF WAP++NVV Y G +R IR YEW
Sbjct: 530 YLFHQHQLYGPFIVVVPLSTLTSWQREFDTWAPDMNVVVYLGDVTSRKTIRDYEW----- 584
Query: 857 DNLNKKTSSYKFNVLLTTYEMILADSSHLRGVPWEVLVVDEGHRXXXXXXXXXXXXXXXX 916
+N +T KFN LLTTYE++L D L + W L VDE HR
Sbjct: 585 --INPQTKRIKFNALLTTYEILLKDKGVLGNINWAFLGVDEAHRLKNDDSLLYKTLIDFR 642
Query: 917 XQHRVLLTGTPLQNNIGEMYNLLNFLQPASFPSLSSFEEKFNDLTTTQKVEELKKLVAPH 976
HR+L+TGTPLQN++ E+++LL+FL F S FE++ + L K++ P
Sbjct: 643 SNHRLLITGTPLQNSLKELWSLLHFLMSDKFESWEDFEDEHGK-GRDNGYQSLHKVLEPF 701
Query: 977 MLRRLKKDAMQNIPPKTERMVPVELSSIQAEYYRAMLTKNYQILRNIGKGVAQQSMLNIV 1036
+LRR+KKD +++P K E+++ V++S+ Q ++Y+ +LT+N++ L +G + LNIV
Sbjct: 702 LLRRVKKDVEKSLPAKVEQILRVDMSAQQKQFYKWILTRNFKALSKGTRG-SSSGFLNIV 760
Query: 1037 MQLRKVCNHPYLIPGTEPDSGSVEFLH-EMRIKASAKLTLLHSMLKVLYKEGHRVLIFSQ 1095
M+L+K CNH +LI E H + ++ KL LL +L L G+RVLIFSQ
Sbjct: 761 MELKKCCNHAFLIKQPEDGENDAPQEHLQSLVRGGGKLVLLDKLLTRLKDRGNRVLIFSQ 820
Query: 1096 MTKLLDILEDYLNIEFGPKTYERVDGSVSVGDRQAAITRFNQDKSR-FVFLLSTRSCGLG 1154
M ++LDIL DYL+++ ++R+DGS+ R+ A+ FN + S F FLLSTR+ GLG
Sbjct: 821 MVRMLDILADYLSMK--RYQFQRLDGSIKGELRKQALDHFNAEGSEDFCFLLSTRAGGLG 878
Query: 1155 INLATADTVIIYDSDFNPHADIQAMNRAHRIGQSKRLLVYRLVVRASVEERILQLAKKKL 1214
INLA+ADTV+I+DSD+NP D+QA RAHRIGQ K++ +YRLV + +VEE I++ AKKK+
Sbjct: 879 INLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGTVEEDIIERAKKKM 938
Query: 1215 MLDQLFVNK 1223
+LD L + +
Sbjct: 939 VLDHLVIQR 947
Score = 125 (49.1 bits), Expect = 1.7e-118, Sum P(3) = 1.7e-118
Identities = 73/304 (24%), Positives = 121/304 (39%)
Query: 362 DAQRKDELAEETTDPLDKSDKAGVHVNEIPLCK-----DIVPFELQQVDRVLGCR--VKG 414
D++ E E+ KS ++ V + P+ K D+ + D V G R +
Sbjct: 60 DSESHSESGSESNG--SKSHQSSAQVKDKPVRKKDNLADVKKMWEEHPD-VYGVRRSSRS 116
Query: 415 DDTSSSCHISATATDDRHSDDFLVSENHNKILEENLACDTDLDAEVTENLAELSPNVIRS 474
+ +I A + D + + K E D D E E E S +
Sbjct: 117 RQEPARLNIGAEGSSDSEGESSKRKSSRQKKKENTWKDDDSNDEEDVEE--ETSSSESEQ 174
Query: 475 SDEECMKNDIGVDRIQVYRRSVTKECKVTKECKGENAIDLLREDDKDSDPVAVNGKVQDE 534
+++ + R Q + S +K+ + ++ + + + D +DD D D K Q
Sbjct: 175 EEKKVRSRRLPARRPQT-KSSASKQSQKGRKQRKQESSD--EDDDDDDDDEEDTPKRQTR 231
Query: 535 SAVSTEDLGERNDKMVVE-DADVSLRDNEGLTVSEIHITCESTDKDVDV--GKK--TSGS 589
+T+ + + D+ E D+D + EG + + E+ +K VD GKK T S
Sbjct: 232 RRAATK-VSYKEDQNDFETDSDDLIEMAEGAEEQQDDDS-ETIEKVVDTRTGKKGATGAS 289
Query: 590 VAKRVQEPAVTESAQVKGKAVSYE--FLVKWVGKSNIHNSW--IPE-SQLKVLAKRKLEN 644
E A + E FL+KW G S IHN+W + +Q KV +KLEN
Sbjct: 290 TTLYAIEENGDPGADFDPEKEEGETQFLIKWKGWSYIHNTWESVDSLTQQKVKGMKKLEN 349
Query: 645 YKAK 648
+K K
Sbjct: 350 FKKK 353
Score = 67 (28.6 bits), Expect = 2.1e-112, Sum P(3) = 2.1e-112
Identities = 39/158 (24%), Positives = 68/158 (43%)
Query: 148 SQSGVKSSGADKVSQIFGNSILARKRSNKGKSVLALGVKSLEKSLDSSQVDVSCSTKPEN 207
S+SG +S+G+ K Q +S + + + K LA K E+ D V S ++ E
Sbjct: 65 SESGSESNGS-KSHQ---SSAQVKDKPVRKKDNLADVKKMWEEHPDVYGVRRSSRSRQEP 120
Query: 208 TSAGVPVEGSSSCPNDDDEKQLNASPT--DSLADTKFHPAEEVLPHSQVTKSEQNDEVPV 265
+ EGSS + +++ + ++ D + E+V + ++SEQ +E V
Sbjct: 121 ARLNIGAEGSSDSEGESSKRKSSRQKKKENTWKDDDSNDEEDVEEETSSSESEQ-EEKKV 179
Query: 266 EKHEKSSTNGSSGIKFVLAIGASERDRK-RKPEVKDED 302
+ + A S++ RK RK E DED
Sbjct: 180 RSRRLPARRPQTKSS---ASKQSQKGRKQRKQESSDED 214
Score = 67 (28.6 bits), Expect = 2.1e-112, Sum P(3) = 2.1e-112
Identities = 38/163 (23%), Positives = 67/163 (41%)
Query: 148 SQSGVKSSGADKVSQIFGNSILARKRSNKGKSVLALGVKSLEKSLDSSQVDVSCSTKPEN 207
+QS S+ A + S G+ ++ S +G K+ + +S+ S S +
Sbjct: 15 TQSNASSNSASEESNRSGSESGSQSESEQGSE------KAQSRHSESN----STSDSESH 64
Query: 208 TSAGVPVEGSSSCPNDDDEKQLNASPTDSLADTKFHPAEEVLPHSQVTKSEQNDEVPVEK 267
+ +G GS S + K D+LAD K EE V +S ++ + P
Sbjct: 65 SESGSESNGSKSHQSSAQVKDKPVRKKDNLADVK-KMWEEHPDVYGVRRSSRSRQEPARL 123
Query: 268 HEKSSTNGSSGIKFVLAIGASERDRKRKPEVKDEDSQKKLRVD 310
+ GSS + + S R +K++ KD+DS + V+
Sbjct: 124 N--IGAEGSSDSEGESSKRKSSRQKKKENTWKDDDSNDEEDVE 164
Score = 62 (26.9 bits), Expect = 1.7e-118, Sum P(3) = 1.7e-118
Identities = 17/71 (23%), Positives = 35/71 (49%)
Query: 1213 KLMLDQLFVNKSGS---QKEVEDILRWGTEELFNDSPGINGKDMGENNTSIEEAVRDLEQ 1269
+ +LD N + + ++E+ IL++G E+LF ++ G++ I+E +R E
Sbjct: 953 RTVLDNSSANSNSNPFNKEELSAILKFGAEDLFKEA---EGEESEPQEMDIDEILRLAET 1009
Query: 1270 KHRKRGGGLGD 1280
+ +G D
Sbjct: 1010 RESDQGSSATD 1020
Score = 54 (24.1 bits), Expect = 1.2e-117, Sum P(3) = 1.2e-117
Identities = 22/88 (25%), Positives = 36/88 (40%)
Query: 1277 GLGDVYQDKCTEGSTKIVWDENAIARLLDRSNLQSGSTDLAEGDLENDMLGSVKATEWN- 1335
G D++++ E S D + I RL + GS+ +++L K +
Sbjct: 980 GAEDLFKEAEGEESEPQEMDIDEILRLAETRESDQGSS------ATDELLSQFKVANFTM 1033
Query: 1336 EETTEDQAESPVAAVDDASAENSERKEE 1363
+E+T D E P D+ E RK E
Sbjct: 1034 DESTPDLDEKPGRDWDEIIPEEQRRKVE 1061
Score = 47 (21.6 bits), Expect = 6.4e-117, Sum P(3) = 6.4e-117
Identities = 21/85 (24%), Positives = 37/85 (43%)
Query: 1261 EEAVRDLEQKHRKRGGGLGDVYQDKCTEGSTKIVW----DENAIARLLDRSNLQSGSTDL 1316
EE R +E++ +++ + D+Y + S K D + ++L RS+ TD
Sbjct: 1054 EEQRRKVEEEQKQKE--MEDIYMLPRSRSSNKKAQANDSDSDVGSKLKHRSSGSDSETDD 1111
Query: 1317 AEGDLENDMLGSVKATEWNEETTED 1341
+E D G +A + N E D
Sbjct: 1112 SEDDKRPKRRGRPRARKNNVEGFTD 1136
Score = 38 (18.4 bits), Expect = 5.6e-116, Sum P(3) = 5.6e-116
Identities = 18/63 (28%), Positives = 26/63 (41%)
Query: 1221 VNKSGSQKEVEDIL-----RWGTEEL-FNDSPGINGKDMGENNTSIEEAVRDLEQKHR-K 1273
V + QKE+EDI R ++ NDS G + ++ + D E R K
Sbjct: 1060 VEEEQKQKEMEDIYMLPRSRSSNKKAQANDSDSDVGSKLKHRSSGSDSETDDSEDDKRPK 1119
Query: 1274 RGG 1276
R G
Sbjct: 1120 RRG 1122
>UNIPROTKB|E2QUI5 [details] [associations]
symbol:CHD1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 CTD:1105
GeneTree:ENSGT00560000076896 KO:K11367 EMBL:AAEX03002026
RefSeq:XP_848459.1 Ensembl:ENSCAFT00000012332 GeneID:488891
KEGG:cfa:488891 NextBio:20862162 Uniprot:E2QUI5
Length = 1711
Score = 1107 (394.7 bits), Expect = 2.2e-118, Sum P(3) = 2.2e-118
Identities = 280/742 (37%), Positives = 407/742 (54%)
Query: 517 EDDKDSD--PVAVNGKVQDESAVSTEDLGERNDKMVVEDADVSLRDNEGLTVSEIHITCE 574
++DK S VN +++ + T+ +D + V DV + E E + C
Sbjct: 225 DNDKRSSRRQATVNVSYKEDEEMKTDS----DDLLEVCGEDVPQPEEEEFETIERFMDCR 280
Query: 575 STDKDVDVGKKTSGSVAKRVQEP-AVTESAQVKGKAVSYEFLVKWVGKSNIHNSWIPESQ 633
K G T+ + +P A E + G+ ++L+KW G S+IHN+W E
Sbjct: 281 IGRKGA-TGATTTIYAVEADGDPNAGFEKNKEPGEI---QYLIKWKGWSHIHNTWETEET 336
Query: 634 LK---VLAKRKLENYKAK-----------------YGTTVINICDERWKQPQ---RVISL 670
LK V +KL+NYK K Y + D+ KQ Q R+I+
Sbjct: 337 LKQQNVRGMKKLDNYKKKDQETKRWLKNASPEDVEYYNCQQELTDDLHKQYQIVERIIAH 396
Query: 671 RSSKD--GTREAFVKWTGLPYDECTWEKLDEPAL-EKYSHLTDLFVQFERQTLKKDASED 727
+ K G + + KW GLPY EC+WE D + +K+ D + F R K +D
Sbjct: 397 SNQKSAAGYPDYYCKWQGLPYSECSWE--DGALISKKFQACIDEY--FSRNQSKTTPFKD 452
Query: 728 ELPRGKGDCQQSEIVALTEQPEELKGGA---LFPHQLEALNWLRKCWHKSKNVILADEMG 784
K Q+ VAL +QP + G L +QL LNWL W K + ILADEMG
Sbjct: 453 ----CKVLKQRPRFVALKKQPSYIGGHESLELRDYQLNGLNWLAHSWCKGNSCILADEMG 508
Query: 785 LGKTVSACAFISSLYCEFKAKLPCLVLVPLSTMPNWLAEFALWAPNLNVVEYHGCAKARA 844
LGKT+ +F++ L+ E + P L++VPLST+ +W E WA +N V Y G +R
Sbjct: 509 LGKTIQTISFLNYLFHEHQLYGPFLLVVPLSTLTSWQREIQTWASQMNAVVYLGDINSRN 568
Query: 845 IIRQYEWHASDPDNLNKKTSSYKFNVLLTTYEMILADSSHLRGVPWEVLVVDEGHRXXXX 904
+IR +EW ++ +T KFN+LLTTYE++L D + L G+ W + VDE HR
Sbjct: 569 MIRTHEW-------MHPQTKRLKFNILLTTYEILLKDKAFLGGLNWAFIGVDEAHRLKND 621
Query: 905 XXXXXXXXXXXXXQHRVLLTGTPLQNNIGEMYNLLNFLQPASFPSLSSFEEKFNDLTTTQ 964
HR+L+TGTPLQN++ E+++LL+F+ P F S FEE+
Sbjct: 622 DSLLYKTLIDFKSNHRLLITGTPLQNSLKELWSLLHFIMPEKFSSWEDFEEEHGK-GREY 680
Query: 965 KVEELKKLVAPHMLRRLKKDAMQNIPPKTERMVPVELSSIQAEYYRAMLTKNYQILRNIG 1024
L K + P +LRR+KKD +++P K E+++ +E+S++Q +YY+ +LT+NY+ L
Sbjct: 681 GYASLHKELEPFLLRRVKKDVEKSLPAKVEQILRMEMSALQKQYYKWILTRNYKALSKGS 740
Query: 1025 KGVAQQSMLNIVMQLRKVCNHPYLI--PGTEPDSGSVEFLHEMRIKASAKLTLLHSMLKV 1082
KG + LNI+M+L+K CNH YLI P E L + I++S KL LL +L
Sbjct: 741 KG-STSGFLNIMMELKKCCNHCYLIKPPDNNEFYNKQEALQHL-IRSSGKLILLDKLLIR 798
Query: 1083 LYKEGHRVLIFSQMTKLLDILEDYLNIEFGPKTYERVDGSVSVGDRQAAITRFNQDKSR- 1141
L + G+RVLIFSQM ++LDIL +YL P ++R+DGS+ R+ A+ FN + S
Sbjct: 799 LRERGNRVLIFSQMVRMLDILAEYLKYRQFP--FQRLDGSIKGELRKQALDHFNAEGSED 856
Query: 1142 FVFLLSTRSCGLGINLATADTVIIYDSDFNPHADIQAMNRAHRIGQSKRLLVYRLVVRAS 1201
F FLLSTR+ GLGINLA+ADTV+I+DSD+NP D+QA RAHRIGQ K++ +YRLV + S
Sbjct: 857 FCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGS 916
Query: 1202 VEERILQLAKKKLMLDQLFVNK 1223
VEE IL+ AKKK++LD L + +
Sbjct: 917 VEEDILERAKKKMVLDHLVIQR 938
Score = 58 (25.5 bits), Expect = 2.2e-118, Sum P(3) = 2.2e-118
Identities = 18/57 (31%), Positives = 30/57 (52%)
Query: 1226 SQKEVEDILRWGTEELFNDSPGINGKDMGENNTSIEEAVRDLEQKHRKRGGGL--GD 1280
+++E+ IL++G EELF + P G++ I+E ++ E H G L GD
Sbjct: 960 NKEELSAILKFGAEELFKE-P--EGEEQEPQEMDIDEILKRAET-HENEPGPLTVGD 1012
Score = 58 (25.5 bits), Expect = 2.2e-118, Sum P(3) = 2.2e-118
Identities = 29/118 (24%), Positives = 44/118 (37%)
Query: 191 SLDSSQVDVSCSTKPENTSAGVPVEGSSSCPNDDD--EKQLNASP--TDSLADTKFHPAE 246
S S D S S + S GS S D E ++ A P D K P+
Sbjct: 34 SSSGSSSDGSSSQSGSSDSDSGSESGSQSESESDTSRENKVQAKPPKVDGAEFWKSSPSI 93
Query: 247 EVLPHSQVTKSEQNDEVPVEKHEKSSTNGSSGIKFVLAIGASERDRKRKPEVKDEDSQ 304
+ S + K +Q + ++H SS +GS + ++ + KDED Q
Sbjct: 94 LAVQRSAMLKKQQQQQ---QQHPASSNSGSEEDSSSSEDSDDSSNEVKRKKHKDEDWQ 148
Score = 55 (24.4 bits), Expect = 4.6e-118, Sum P(3) = 4.6e-118
Identities = 15/55 (27%), Positives = 32/55 (58%)
Query: 5 SSSTSTMINRNWVLKRKRRKLPCGPGLSN-GKEENLVTSESPRNTPSAKRRLKNE 58
SS + + R+ +LK+++++ P SN G EE+ +SE ++ + +R K++
Sbjct: 89 SSPSILAVQRSAMLKKQQQQQQQHPASSNSGSEEDSSSSEDSDDSSNEVKRKKHK 143
Score = 50 (22.7 bits), Expect = 1.6e-117, Sum P(3) = 1.6e-117
Identities = 28/129 (21%), Positives = 49/129 (37%)
Query: 148 SQSGVKSS--GADKVSQIFGNSILARKRSNKGKSVLALGVKSLEKSLDSSQVDVSCSTKP 205
SQSG S G++ SQ S +R+ + K G + + S V S K
Sbjct: 45 SQSGSSDSDSGSESGSQSESESDTSRENKVQAKPPKVDGAEFWKSSPSILAVQRSAMLKK 104
Query: 206 ENTSAGVPVEGSSSCPNDDDEKQLNASPTDSLADTKFHPAEE--VLPHSQVTKSEQNDEV 263
+ S+S +D ++ + + K H E+ + ++S + E
Sbjct: 105 QQQQQQQHPASSNSGSEEDSSSSEDSDDSSNEVKRKKHKDEDWQMSGSGSPSQSGSDSES 164
Query: 264 PVEKHEKSS 272
E+ +KSS
Sbjct: 165 EEEERDKSS 173
Score = 49 (22.3 bits), Expect = 2.0e-117, Sum P(3) = 2.0e-117
Identities = 30/136 (22%), Positives = 56/136 (41%)
Query: 167 SILARKRSNKGKSVLALGVKSLEKSLDSSQVDVSCSTKPENTSAGVPVEGSSSCPNDDDE 226
SILA +RS K + S S+ D S S +++S V + ++D +
Sbjct: 92 SILAVQRSAMLKKQQQQQQQHPASSNSGSEEDSSSSEDSDDSSNEVKRKKHK---DEDWQ 148
Query: 227 KQLNASPTDSLADTKFHPAEEVLPHSQVTKSEQNDEVPVEKHEKSSTNGSSGIKFVLAIG 286
+ SP+ S +D++ E T+S+ + V+ + + + + K +L G
Sbjct: 149 MSGSGSPSQSGSDSESEEEERDKSSCDETESDYEPKNKVKSRKPQNRSKAKNGKKIL--G 206
Query: 287 ASERDRKRKPEVKDED 302
+R E DE+
Sbjct: 207 QKKRQIDSSEEEDDEE 222
Score = 47 (21.6 bits), Expect = 3.2e-117, Sum P(3) = 3.2e-117
Identities = 18/53 (33%), Positives = 27/53 (50%)
Query: 193 DSSQVDV---SCSTKPENTSAGVPVEGSSSCP--NDDDEKQLNASPTDSLADT 240
+SSQ D S S +S+G +GSSS +D D + S ++S +DT
Sbjct: 16 ESSQSDDDSGSASGSGSGSSSGSSSDGSSSQSGSSDSDSGSESGSQSESESDT 68
Score = 45 (20.9 bits), Expect = 5.2e-117, Sum P(3) = 5.2e-117
Identities = 12/38 (31%), Positives = 18/38 (47%)
Query: 19 KRKRRKLPCGPGLSNGKEENLVTSESPRNTPSAKRRLK 56
+ +R K C S+ + +N V S P+N AK K
Sbjct: 166 EEERDKSSCDETESDYEPKNKVKSRKPQNRSKAKNGKK 203
Score = 44 (20.5 bits), Expect = 6.7e-117, Sum P(3) = 6.7e-117
Identities = 13/48 (27%), Positives = 23/48 (47%)
Query: 189 EKSLDSSQVDVSCSTKPENTSAGVPVEGSSSCPNDDDEKQLNASPTDS 236
E+S+ +S + S S +++G SS +D Q +S +DS
Sbjct: 7 EESVRNSSGESSQSDDDSGSASGSGSGSSSGSSSDGSSSQSGSSDSDS 54
Score = 42 (19.8 bits), Expect = 1.1e-116, Sum P(3) = 1.1e-116
Identities = 25/143 (17%), Positives = 52/143 (36%)
Query: 414 GDDTSSSCHISATATDDRHSDDFLVSENHNKILEENLACDTDLDAEVTENLAELSPNVIR 473
G + S S ++ D S+ SE+ + EN + E + SP+++
Sbjct: 37 GSSSDGSSSQSGSSDSDSGSESGSQSESESDTSRENKVQAKPPKVDGAE-FWKSSPSILA 95
Query: 474 SSDEECMKNDIGVDRIQ-VYRRSVTKECKVTKECKGENAIDLLREDDKDSDPVAVNGKVQ 532
+K + S ++E + E +++ ++ R+ KD D
Sbjct: 96 VQRSAMLKKQQQQQQQHPASSNSGSEEDSSSSEDSDDSSNEVKRKKHKDEDWQMSGSGSP 155
Query: 533 DESAVSTEDLGERNDKMVVEDAD 555
+S +E E DK ++ +
Sbjct: 156 SQSGSDSESEEEERDKSSCDETE 178
Score = 37 (18.1 bits), Expect = 3.6e-116, Sum P(3) = 3.6e-116
Identities = 7/35 (20%), Positives = 20/35 (57%)
Query: 1239 EELFNDSPGINGKDMGENNTSIEEAVRDLEQKHRK 1273
EE+ +DS + + E++ + E+ + +++ +K
Sbjct: 1350 EEMKSDSSPLPSEKSDEDDDKLNESKSESKERSKK 1384
>WB|WBGene00010369 [details] [associations]
symbol:chd-1 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0009792 "embryo development ending in
birth or egg hatching" evidence=IMP] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR002464
Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS51194 SMART:SM00298 SMART:SM00490 Pfam:PF00385
GO:GO:0005524 GO:GO:0005634 GO:GO:0009792 GO:GO:0003677
InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 GeneTree:ENSGT00560000076896
KO:K11367 HOGENOM:HOG000207917 OMA:VERVIKW EMBL:Z92970 PIR:T23056
RefSeq:NP_491994.2 ProteinModelPortal:O17909 SMR:O17909
STRING:O17909 PaxDb:O17909 EnsemblMetazoa:H06O01.2 GeneID:172432
KEGG:cel:CELE_H06O01.2 UCSC:H06O01.2 CTD:172432 WormBase:H06O01.2
InParanoid:O17909 NextBio:875487 Uniprot:O17909
Length = 1461
Score = 1105 (394.0 bits), Expect = 4.0e-118, Sum P(3) = 4.0e-118
Identities = 282/785 (35%), Positives = 432/785 (55%)
Query: 474 SSDEECMKNDIGVDRIQVYRRSVTKECKVTKECKGENAIDLLREDDKDSDPVAVNGKVQD 533
+S+E D DR + RR+VTK KV K+ K A+ +++ +V G V
Sbjct: 115 NSEESQSSEDDWDDRRKP-RRTVTK--KVVKQTK--KAVSVVKRK-------SVKGNVNY 162
Query: 534 ESAVSTEDLGERNDKMVVEDADVSLRDNEGLTVSEIHITCESTDK-DVDV-GKKTSGSVA 591
S +D+ + D ++ D + ++ EG + + T E K V G S +
Sbjct: 163 AEKNSDDDIDD--DDVLEWDEEPAV-PAEGPAI--LTETVERVIKWRHGVPGATGSATTC 217
Query: 592 KRVQEPAVTESAQVKGKAVSYEFLVKWVGKSNIHNSWIPESQLKVL-AK--RKLENYKAK 648
+ + + Q+ G +F VKW G S++HN+W E+ L ++ AK +K++NY K
Sbjct: 218 YNIADKG-DPNDQIPGDKTEQQFFVKWTGWSHLHNTWESENSLALMNAKGLKKVQNYVKK 276
Query: 649 YGTTVI---------------------NICDERWKQPQRVISLRSSKD----GTR--EAF 681
+ +C+E +K+ +RV++ ++S+D G+ E
Sbjct: 277 QKEVEMWKRSADKEYIEFFECEQQMAEELCEE-YKKVERVVAHQTSRDRAADGSMATEYL 335
Query: 682 VKWTGLPYDECTWEKLDEPALEKYSHLTDLFVQFERQTLKKDASEDELPRGKGDCQQSEI 741
+KW+GLPY +CTWE DE + + + + E LK + R + ++ E
Sbjct: 336 IKWSGLPYSDCTWE--DEKMVAP-EQIKAYYHRIEN--LKSPNKNSNVLRKRPKFEKFES 390
Query: 742 VALTEQPEELKGGALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCE 801
+ + + L +QLE LNW+ W K + ILADEMGLGKT+ + + ++SL+
Sbjct: 391 MPDFLKTDGESTHKLRDYQLEGLNWMVYAWCKGNSSILADEMGLGKTIQSISLLASLFHR 450
Query: 802 FKAKLPCLVLVPLSTMPNWLAEFALWAPNLNVVEYHGCAKARAIIRQYEWHASDPDNLNK 861
+ P LV+VPLSTM W EFA WAP +N+V Y G +R +IRQYEW
Sbjct: 451 YDLAGPYLVVVPLSTMAAWQKEFAQWAPEMNLVVYMGDVVSRDMIRQYEWFVGG------ 504
Query: 862 KTSSYKFNVLLTTYEMILADSSHLRGVPWEVLVVDEGHRXXXXXXXXXXXXXXXXXQHRV 921
T K N +LTTYE++L D + L + W L+VDE HR H++
Sbjct: 505 -TKKMKINAILTTYEILLKDKAFLSSIDWAALLVDEAHRLKNDESLLYKSLTQFRFNHKL 563
Query: 922 LLTGTPLQNNIGEMYNLLNFLQPASFPSLSSFEEKFNDLTTTQKVEELKKLVAPHMLRRL 981
L+TGTPLQN++ E++ LL+F+ P F FE N+ + + + L K + P +LRR+
Sbjct: 564 LITGTPLQNSLKELWALLHFIMPEKFDCWEEFETAHNE-SNHKGISALHKKLEPFLLRRV 622
Query: 982 KKDAMQNIPPKTERMVPVELSSIQAEYYRAMLTKNYQILRNIGKGV--AQQSMLNIVMQL 1039
KKD +++PPKTE+++ V++++ Q ++Y+ +LTKNY R + KGV + +N+VM+L
Sbjct: 623 KKDVEKSLPPKTEQILRVDMTAHQKQFYKWILTKNY---RELSKGVKGSINGFVNLVMEL 679
Query: 1040 RKVCNHPYLIPGTEPDSGSVEFLHEMRIKASAKLTLLHSMLKVLYKEGHRVLIFSQMTKL 1099
+K CNH L + + + +K+S KL LL +L L +GHRVLIFSQM +
Sbjct: 680 KKCCNHASLTRQYDHIYDDAQGRLQQLLKSSGKLILLDKLLCRLKDKGHRVLIFSQMVMM 739
Query: 1100 LDILEDYLNIEFGPKTYERVDGSVSVGDRQAAITRFNQDKSR-FVFLLSTRSCGLGINLA 1158
LDIL++YL + P +R+DGS+ R+ A+ +N S F FLLSTR+ GLGINLA
Sbjct: 740 LDILQEYLQLRRFPS--QRLDGSMRADLRKQALDHYNAPGSTDFAFLLSTRAGGLGINLA 797
Query: 1159 TADTVIIYDSDFNPHADIQAMNRAHRIGQSKRLLVYRLVVRASVEERILQLAKKKLMLDQ 1218
TADTVII+DSD+NP D+QAM+RAHRIGQ+K + +YRLV + SVEE I++ AK+KL+LD
Sbjct: 798 TADTVIIFDSDWNPQNDLQAMSRAHRIGQTKTVNIYRLVTKGSVEEEIVERAKRKLVLDH 857
Query: 1219 LFVNK 1223
L + +
Sbjct: 858 LVIQR 862
Score = 50 (22.7 bits), Expect = 4.0e-118, Sum P(3) = 4.0e-118
Identities = 17/61 (27%), Positives = 32/61 (52%)
Query: 215 EGSSSCPNDDDEKQLNASPTDSLADTKFHPAEEVLPHSQVTKSEQNDEVPVEKHEKSSTN 274
EG+S+ D+DEK+ A +S +D +++ S+ + S + DE P K + ++
Sbjct: 30 EGNSTS-EDNDEKEKAADSPESSSDQS-DDSDDA---SENSSSSEPDE-PAPKKKNNNNR 83
Query: 275 G 275
G
Sbjct: 84 G 84
Score = 43 (20.2 bits), Expect = 4.0e-118, Sum P(3) = 4.0e-118
Identities = 8/21 (38%), Positives = 14/21 (66%)
Query: 1227 QKEVEDILRWGTEELFNDSPG 1247
++E+ IL++G ELF + G
Sbjct: 885 KQELSAILKFGAVELFKEKEG 905
>UNIPROTKB|Q8TD26 [details] [associations]
symbol:CHD6 "Chromodomain-helicase-DNA-binding protein 6"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=NAS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=NAS] [GO:0006338 "chromatin remodeling" evidence=NAS]
[GO:0007399 "nervous system development" evidence=NAS] [GO:0003682
"chromatin binding" evidence=NAS] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR002464 InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271
Pfam:PF07533 PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 SMART:SM00717 Pfam:PF00385
GO:GO:0005524 GO:GO:0005634 GO:GO:0007399 GO:GO:0006355
GO:GO:0003677 GO:GO:0006351 GO:GO:0003682 GO:GO:0006338
InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR023780 PROSITE:PS00598 CleanEx:HS_CHD5 EMBL:AY034072
EMBL:AL121674 EMBL:AL031669 EMBL:AL031667 EMBL:BC021907
EMBL:BC039860 EMBL:BC040016 EMBL:AF525085 EMBL:AB037756
EMBL:AK026022 IPI:IPI00220289 IPI:IPI00395823 IPI:IPI00513717
RefSeq:NP_115597.3 UniGene:Hs.740645 UniGene:Hs.741381 PDB:2EPB
PDBsum:2EPB ProteinModelPortal:Q8TD26 SMR:Q8TD26 IntAct:Q8TD26
MINT:MINT-1197235 STRING:Q8TD26 PhosphoSite:Q8TD26 DMDM:296439466
PaxDb:Q8TD26 PRIDE:Q8TD26 Ensembl:ENST00000373222
Ensembl:ENST00000373233 Ensembl:ENST00000440647 GeneID:84181
KEGG:hsa:84181 UCSC:uc002xka.1 UCSC:uc002xkc.3 CTD:84181
GeneCards:GC20M040030 H-InvDB:HIX0015824 H-InvDB:HIX0027712
HGNC:HGNC:19057 neXtProt:NX_Q8TD26 PharmGKB:PA134974700
HOVERGEN:HBG081150 InParanoid:Q8TD26 KO:K14436 OMA:CKWATME
OrthoDB:EOG4NP72J PhylomeDB:Q8TD26 ChiTaRS:CHD6
EvolutionaryTrace:Q8TD26 GenomeRNAi:84181 NextBio:73559
ArrayExpress:Q8TD26 Bgee:Q8TD26 CleanEx:HS_CHD6
Genevestigator:Q8TD26 GermOnline:ENSG00000124177 Uniprot:Q8TD26
Length = 2715
Score = 1131 (403.2 bits), Expect = 4.9e-118, Sum P(3) = 4.9e-118
Identities = 302/862 (35%), Positives = 444/862 (51%)
Query: 507 KGENAIDLLREDDKDSDPVAVNGKVQDESAVSTEDLGERNDKMVV-----EDADVSLRDN 561
K E ++ L D ++P + +ES ST+ R+ + V ED D + D+
Sbjct: 202 KSETTVESLELDQGLTNPSL---RSPEESTESTDSQKRRSGRQVKRRKYNEDLDFKVVDD 258
Query: 562 EGLTVSEIH------ITCESTDKDVDVGKKTSGSVAKRVQEPAVTESAQVKGKAVSYE-F 614
+G T++ + ++ + + + ++ +++ + E F
Sbjct: 259 DGETIAVLGAGRTSALSASTLAWQAEEPPEDDANIIEKILASKTVQEVHPGEPPFDLELF 318
Query: 615 LVKWVGKSNIHNSWIPESQLKVLAK--RKLENYKAKYGTT--VINICDERWKQPQ----- 665
VK+ S +H W +L+ + +K++ ++ K + DE P
Sbjct: 319 YVKYRNFSYLHCKWATMEELEKDPRIAQKIKRFRNKQAQMKHIFTEPDEDLFNPDYVEVD 378
Query: 666 RVISLRSSKDG-TREA----FVKWTGLPYDECTWEKLDEPALEKYSHLTDLFVQFERQTL 720
R++ + +KD T E VKW LPY+E TWE ++ K L V E + +
Sbjct: 379 RILEVAHTKDAETGEEVTHYLVKWCSLPYEESTWELEEDVDPAKVKEFESLQVLPEIKHV 438
Query: 721 KKDASEDELPRGKGDCQQSEIVALTEQPEELKGGALFPHQLEALNWLRKCWHKSKNVILA 780
++ AS D Q L + E L +QLE +NWL W+ KN ILA
Sbjct: 439 ERPAS---------DSWQK----LEKSREYKNSNQLREYQLEGMNWLLFNWYNRKNCILA 485
Query: 781 DEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLSTMPNWLAEFALWAPNLNVVEYHGCA 840
DEMGLGKT+ + F+S ++ P L++ PLST+ NW EF W +N + YHG
Sbjct: 486 DEMGLGKTIQSITFLSEIFLR-GIHGPFLIIAPLSTITNWEREFRTWT-EMNAIVYHGSQ 543
Query: 841 KARAIIRQYEWHASDPDNLNKKTSSYKFNVLLTTYEMILADSSHLRGVPWEVLVVDEGHR 900
+R +I+QYE D N + +KF+V++TT+EMILAD L+ + W +++DE HR
Sbjct: 544 ISRQMIQQYEMVYRDAQG-NPLSGVFKFHVVITTFEMILADCPELKKIHWSCVIIDEAHR 602
Query: 901 XXXXXXXXXXXXXXXXXQHRVLLTGTPLQNNIGEMYNLLNFLQPASFPSLSSFEEKFNDL 960
+H+VLLTGTPLQN++ E+++LLNFL+P+ FPS ++F E+F DL
Sbjct: 603 LKNRNCKLLEGLKLMALEHKVLLTGTPLQNSVEELFSLLNFLEPSQFPSETAFLEEFGDL 662
Query: 961 TTTQKVEELKKLVAPHMLRRLKKDAMQNIPPKTERMVPVELSSIQAEYYRAMLTKNYQIL 1020
T ++V++L+ ++ P MLRRLK D +N+ PK E ++ VEL++IQ +YYRA+L KN+ L
Sbjct: 663 KTEEQVKKLQSILKPMMLRRLKDDVEKNLAPKQETIIEVELTNIQKKYYRAILEKNFSFL 722
Query: 1021 RNIGKGVAQQSMLNIV---MQLRKVCNHPYLIPGTE------------PDSGSVEFLHEM 1065
KG Q +M N++ M+LRK CNHPYLI G E PD+ +F +
Sbjct: 723 T---KGANQHNMPNLINTMMELRKCCNHPYLINGAEEKILEDFRKTHSPDAP--DFQLQA 777
Query: 1066 RIKASAKLTLLHSMLKVLYKEGHRVLIFSQMTKLLDILEDYLNIEFGPKTYERVDGSVSV 1125
I+A+ KL L+ +L L GH+VLIFSQM + LDILEDYL I+ TYER+DG V
Sbjct: 778 MIQAAGKLVLIDKLLPKLIAGGHKVLIFSQMVRCLDILEDYL-IQ-RRYTYERIDGRVRG 835
Query: 1126 GDRQAAITRF-NQDKSRFVFLLSTRSCGLGINLATADTVIIYDSDFNPHADIQAMNRAHR 1184
RQAAI RF D RFVFLL TR+ GLGINL ADT II+DSD+NP D+QA R HR
Sbjct: 836 NLRQAAIDRFCKPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHR 895
Query: 1185 IGQSKRLLVYRLVVRASVEERILQLAKKKLMLDQLF---VNKSGSQKEVEDILRWGTEEL 1241
IGQSK + VYRL+ R S E + A KL LD+ +N+ G V+ + + E+L
Sbjct: 896 IGQSKAVKVYRLITRNSYEREMFDKASLKLGLDKAVLQDINRKGGTNGVQQLSKMEVEDL 955
Query: 1242 FNDSPGINGKDMGENNTSIEEAVRDLEQKHRKRGGGLGDVYQDK-CTEGSTKIVWDENAI 1300
G G M E + + D++Q ++R + + K T V N
Sbjct: 956 LRK--GAYGALMDEEDEGSKFCEEDIDQILQRRTHTITIQSEGKGSTFAKASFVASGNRT 1013
Query: 1301 ARLLDRSNLQSGSTDLAEGDLE 1322
LD N +AE D E
Sbjct: 1014 DISLDDPNFWQKWAKIAELDTE 1035
Score = 67 (28.6 bits), Expect = 4.9e-118, Sum P(3) = 4.9e-118
Identities = 30/99 (30%), Positives = 41/99 (41%)
Query: 495 SVTKECKVTKECKGENAIDLLREDDKDSDPVAVNGKVQDESAVSTEDLGERNDKMVVEDA 554
S TKE K + C A R+ K+ P V K + G+R + VE
Sbjct: 161 SGTKEAKEKRSCTDSAARTKSRKASKEQGPTPVEKKKK----------GKRKSETTVE-- 208
Query: 555 DVSLRDNEGLTVSEIHITCESTDKDVDVGKKTSGSVAKR 593
SL ++GLT + EST+ D K+ SG KR
Sbjct: 209 --SLELDQGLTNPSLRSPEESTES-TDSQKRRSGRQVKR 244
Score = 46 (21.3 bits), Expect = 2.5e-114, Sum P(2) = 2.5e-114
Identities = 14/52 (26%), Positives = 22/52 (42%)
Query: 257 SEQNDEVPVEKHEKSSTNGSSGIKFVLAIGASERDRKRKPEVKDE--DSQKK 306
S++ PVEK +K + ++ + R PE E DSQK+
Sbjct: 185 SKEQGPTPVEKKKKGKRKSETTVESLELDQGLTNPSLRSPEESTESTDSQKR 236
Score = 43 (20.2 bits), Expect = 4.9e-118, Sum P(3) = 4.9e-118
Identities = 29/137 (21%), Positives = 51/137 (37%)
Query: 181 LALGVKSLEKSLDSSQVDVSCSTKPENTSAGVPVEGSSSCPND---DDEKQLNASPTDSL 237
+ + ++ EK L + +V + P + A V + S P D D E+++ + L
Sbjct: 1 MKMKIQKKEKQLSNLKV---LNHSPMS-DASVNFDYKSPSPFDCSTDQEEKIEDVASHCL 56
Query: 238 ADTKFHPAEE----VLPHSQVTKSEQNDE----VPVEKHEKSSTNGSSGIKFVLAIGASE 289
+ AEE + P + + D V+K K G
Sbjct: 57 PQKDLYTAEEEAATLFPRKMTSHNGMEDSGGGGTGVKKKRKKKEPGDQE-----GAAKGS 111
Query: 290 RDRKRKPEVKDEDSQKK 306
+DR+ KP+ K E + K
Sbjct: 112 KDREPKPKRKREPKEPK 128
Score = 39 (18.8 bits), Expect = 1.3e-113, Sum P(2) = 1.3e-113
Identities = 25/112 (22%), Positives = 45/112 (40%)
Query: 267 KHEKSSTNGSSGIKFVLAI---GASERDRKRKPEVKDEDSQKKLRVDXXXXXXXXXXXXX 323
K ++S T+ ++ K A G + ++K+K + K E + + L +D
Sbjct: 167 KEKRSCTDSAARTKSRKASKEQGPTPVEKKKKGKRKSETTVESLELDQGLTNPSLRSPEE 226
Query: 324 XXIGTLSPGT-SKLHEKQRTNNDEVSASLCEVDVGTKG-LDAQRKDELAEET 373
T S S K+R N+++ + + D T L A R L+ T
Sbjct: 227 STESTDSQKRRSGRQVKRRKYNEDLDFKVVDDDGETIAVLGAGRTSALSAST 278
>UNIPROTKB|F1NVT7 [details] [associations]
symbol:CHD6 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 GeneTree:ENSGT00560000077077 EMBL:AADN02019534
EMBL:AADN02019532 EMBL:AADN02019533 IPI:IPI00818616
Ensembl:ENSGALT00000040615 ArrayExpress:F1NVT7 Uniprot:F1NVT7
Length = 1257
Score = 1141 (406.7 bits), Expect = 9.7e-118, Sum P(2) = 9.7e-118
Identities = 294/817 (35%), Positives = 434/817 (53%)
Query: 502 VTKECKGENAIDLLRED-DKDSDPVAVNGKVQDESAVSTEDLGERNDKMVV-----EDAD 555
V K+ KG+ ++ + D D D ++ + + +ESA S + R+ + V ED D
Sbjct: 115 VEKKKKGKRKNEIPVDSLDLDQDLLSPSAQSPEESAESADSQKRRSGRQVKRRKYNEDLD 174
Query: 556 VSLRDNEGLTVSEIH------ITCESTDKDVDVGKKTSGSVAKRVQEPAVTESAQVKGKA 609
+ D++G T++ + ++ + + + ++ +++ + + G
Sbjct: 175 FKVVDDDGETIAVLGAGRTSALSASTLAWQAEEPPEDDANIIEKILASRMVQKTHPGGLT 234
Query: 610 VSYE-FLVKWVGKSNIHNSW--IPESQLKVLAKRKLENYKAKYGTT--VINICDERWKQP 664
E F VK+ S +H W + E + +K++ ++ K + DE P
Sbjct: 235 FEMEEFYVKYRNFSYLHCKWATLEELEKDPRISQKIKRFRNKQAQMKHIFTEPDEDLFNP 294
Query: 665 Q-----RVISLRSSKD-GTREA----FVKWTGLPYDECTWEKLDEPALEKYSHLTDLFVQ 714
R++ + +KD T E VKW LPY+E TWE ++ K L +
Sbjct: 295 DYVEVDRILEVAHTKDPDTGEEVTHYLVKWCSLPYEESTWELEEDVDPVKIKEFEALQIP 354
Query: 715 FERQTLKKDASEDELPRGKGDCQQSEIVALTEQPEELKGGALFPHQLEALNWLRKCWHKS 774
E + +++ ASE Q+ E + E L +QLE +NWL W+
Sbjct: 355 PEIKHMERPASES--------WQKLE-----KSREYKNSNQLREYQLEGMNWLLFNWYNR 401
Query: 775 KNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLSTMPNWLAEFALWAPNLNVV 834
KN ILADEMGLGKT+ + F+S ++ P L++ PLST+ NW EF W +N +
Sbjct: 402 KNCILADEMGLGKTIQSITFLSEIFL-MGIHGPFLIIAPLSTITNWEREFRTWT-EMNAI 459
Query: 835 EYHGCAKARAIIRQYEWHASDPDNLNKKTSSYKFNVLLTTYEMILADSSHLRGVPWEVLV 894
YHG +R +I+QYE D N +KF V++TT+EMILAD L+ + W +V
Sbjct: 460 VYHGSQISRQMIQQYEMVYRDTQG-NPLPGIFKFQVVITTFEMILADCPELKKIQWRCVV 518
Query: 895 VDEGHRXXXXXXXXXXXXXXXXXQHRVLLTGTPLQNNIGEMYNLLNFLQPASFPSLSSFE 954
+DE HR +H+VLLTGTPLQN++ E+++LLNFL+P FPS ++F
Sbjct: 519 IDEAHRLKNRNCKLLEGLKLMALEHKVLLTGTPLQNSVEELFSLLNFLEPQQFPSETAFL 578
Query: 955 EKFNDLTTTQKVEELKKLVAPHMLRRLKKDAMQNIPPKTERMVPVELSSIQAEYYRAMLT 1014
E+F DL T ++V++L+ ++ P MLRRLK D +N+ PK E ++ VEL++IQ +YYRA+L
Sbjct: 579 EEFGDLKTEEQVKKLQSILKPMMLRRLKDDVEKNLAPKQETIIEVELTNIQKKYYRAILE 638
Query: 1015 KNYQILRNIGKGVAQQSMLNIV---MQLRKVCNHPYLIPGTEPD-------SGSVE---F 1061
KN+ L KG Q +M N++ M+LRK CNHPYLI G E + S E F
Sbjct: 639 KNFSFL---SKGANQHNMPNLINTMMELRKCCNHPYLINGAEEKILEDFRKTHSPEAPDF 695
Query: 1062 LHEMRIKASAKLTLLHSMLKVLYKEGHRVLIFSQMTKLLDILEDYLNIEFGPKTYERVDG 1121
+ I+A+ KL L+ +L L GH+VLIFSQM + LDILEDYL I+ TYER+DG
Sbjct: 696 QLQAMIQAAGKLVLIDKLLPKLIAGGHKVLIFSQMVRCLDILEDYL-IQ-RRYTYERIDG 753
Query: 1122 SVSVGDRQAAITRF-NQDKSRFVFLLSTRSCGLGINLATADTVIIYDSDFNPHADIQAMN 1180
V RQAAI RF D RFVFLL TR+ GLGINL ADT II+DSD+NP D+QA
Sbjct: 754 RVRGNLRQAAIDRFCKPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQA 813
Query: 1181 RAHRIGQSKRLLVYRLVVRASVEERILQLAKKKLMLDQLF---VNKSGSQKEVEDILRWG 1237
R HRIGQSK + VYRL+ R S E + A KL LD+ +N+ G V+ + +
Sbjct: 814 RCHRIGQSKAVKVYRLITRNSYEREMFDKASLKLGLDKAVLQDINRKGGTNGVQQLSKME 873
Query: 1238 TEELFNDSPGINGKDMGENNTSIEEAVRDLEQKHRKR 1274
E+L G G M E + + D++Q ++R
Sbjct: 874 VEDLLRK--GAYGALMDEEDEGSKFCEEDIDQILQRR 908
Score = 39 (18.8 bits), Expect = 9.7e-118, Sum P(2) = 9.7e-118
Identities = 6/34 (17%), Positives = 21/34 (61%)
Query: 277 SGIKFVLAIGASERDRKRKPEVKDEDSQKKLRVD 310
+G++ A+G + +++K ++ +++ +K V+
Sbjct: 7 NGMQDTGAVGTGVKKKRKKKDLGEQEGGEKAAVE 40
Score = 39 (18.8 bits), Expect = 9.7e-118, Sum P(2) = 9.7e-118
Identities = 8/46 (17%), Positives = 21/46 (45%)
Query: 221 PNDDDEKQLNASPTDSLADTKFHPAEEVLPHSQVTKSEQNDEVPVE 266
P + +++ ++ P K + P + K ++ +E+PV+
Sbjct: 85 PKEPKDRKSSSEPGPRTRPKKSSKEQGPTPVEKKKKGKRKNEIPVD 130
>FB|FBgn0086902 [details] [associations]
symbol:kis "kismet" species:7227 "Drosophila melanogaster"
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS;IDA] [GO:0007379 "segment
specification" evidence=IMP] [GO:0007350 "blastoderm segmentation"
evidence=IMP] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0019730 "antimicrobial humoral
response" evidence=IMP] [GO:0007298 "border follicle cell
migration" evidence=IMP] [GO:0005875 "microtubule associated
complex" evidence=IDA] [GO:0007411 "axon guidance" evidence=IMP]
[GO:0016322 "neuron remodeling" evidence=IMP] [GO:0040011
"locomotion" evidence=IMP] [GO:0007614 "short-term memory"
evidence=IMP] [GO:0046622 "positive regulation of organ growth"
evidence=IMP] [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=IMP] [GO:0007476 "imaginal disc-derived
wing morphogenesis" evidence=IMP] [GO:0007031 "peroxisome
organization" evidence=IMP] [GO:0008340 "determination of adult
lifespan" evidence=IMP] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271
Pfam:PF07533 PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298
SMART:SM00490 SMART:SM00592 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0007411 GO:GO:0045892 GO:GO:0005875
EMBL:AE014134 GO:GO:0003677 GO:GO:0006200 GO:GO:0016322
GO:GO:0007031 GO:GO:0016887 GO:GO:0007298 GO:GO:0007614
GO:GO:0004386 GO:GO:0007379 GO:GO:0046622 GO:GO:0007476
GO:GO:0019730 InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0007350 InterPro:IPR023780
KO:K14437 GeneTree:ENSGT00560000077077 RefSeq:NP_001137761.1
UniGene:Dm.3182 ProteinModelPortal:B7Z002 SMR:B7Z002 STRING:B7Z002
EnsemblMetazoa:FBtr0299837 GeneID:33185 KEGG:dme:Dmel_CG3696
CTD:33185 FlyBase:FBgn0086902 OMA:TTFEMIV OrthoDB:EOG4BZKHC
PhylomeDB:B7Z002 GenomeRNAi:33185 NextBio:782323 Bgee:B7Z002
Uniprot:B7Z002
Length = 5517
Score = 1128 (402.1 bits), Expect = 1.0e-117, Sum P(4) = 1.0e-117
Identities = 300/902 (33%), Positives = 470/902 (52%)
Query: 413 KGDDTSSSCHISATATDDRHSDDFLVSENHNKI-LEENLACDTDLDAEVTENLAELSPNV 471
K D+ S + TD D+ +E +K L ++ + A ++ E P+
Sbjct: 1673 KQDEEKSE--LDEATTDKPEGDEKFKTEGESKKDLTDSEETKLESSAMEVDSKEESEPDD 1730
Query: 472 IRSSDEECMKND-IGVDRIQVYRRSVTKECKVTKECKGENAIDLLREDDKDSDPVAVNGK 530
+ SDE+ D + VD +K + ++ K E + E+DK S + +
Sbjct: 1731 SKKSDEDNKDKDKMEVDDEVGKSDKESKPEEQSETVKTEENSKAI-EEDKSSTVLTADHA 1789
Query: 531 VQDESAVSTEDLGER--NDKMVVEDADVSLRDNEGLTVSEIHITCESTDKDVDV-GKKT- 586
+ E+ + ++ E+ +D+ V A+ S + + E T E + +++ G+K
Sbjct: 1790 KEPETVLEKMEVDEKANDDQSAVSKAEGSDEKSTDDSNPE-EATTEKNKESLEIEGEKER 1848
Query: 587 --SGSVAKRVQEPAVTES-AQVKGKAVSY---EFLVKWVGKSNIHNSWIPESQL-----K 635
G + + + TE+ + K + V E+ VK+ S +H W E +L +
Sbjct: 1849 VKEGEESVKKENDEKTEADMENKPEPVFIDVEEYFVKYRNFSYLHCEWRTEEELLKGDRR 1908
Query: 636 VLAK-RKLENYKAKYGTTVINICDERWKQP----QRVISL-----RSSKDGTREAFVKWT 685
V AK R+ + +++ NI DE + Q RV+ + +S + T+ VKW
Sbjct: 1909 VAAKIRRFQQKQSQQLNIFENIEDEPFNQDFTEVDRVLDMSVHTDETSGETTKHYLVKWK 1968
Query: 686 GLPYDECTWEKLDEPALEKYSHLTDLFVQFERQTLKKDASEDELPRGKGDCQQSEIVALT 745
LPY++CTWE ++ +K +++F + + + + P E+
Sbjct: 1969 SLPYEDCTWELEEDVDNDKIEQ----YLRFNKIPQRSEWKSKKRPH-------PELWKKL 2017
Query: 746 EQPEELKGG-ALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKA 804
E+ KGG +L P+QLE LNWL+ W+ + N ILADEMGLGKT+ + F+ S+Y E+
Sbjct: 2018 EKTPVYKGGNSLRPYQLEGLNWLKFSWYNTHNCILADEMGLGKTIQSLTFVHSVY-EYGI 2076
Query: 805 KLPCLVLVPLSTMPNWLAEFALWAPNLNVVEYHGCAKARAIIRQYEWHASDPDNLNKKTS 864
+ P LV+ PLST+PNW EF W ++NVV YHG ++ +I+ YE++ K
Sbjct: 2077 RGPFLVIAPLSTIPNWQREFEGWT-DMNVVVYHGSVTSKQMIQDYEYYYKTESGKVLK-E 2134
Query: 865 SYKFNVLLTTYEMILADSSHLRGVPWEVLVVDEGHRXXXXXXXXXXXXXXXXXQHRVLLT 924
KFNVL+TT+EMI+ D L+ W + V+DE HR +HRVLL+
Sbjct: 2135 PIKFNVLITTFEMIVTDYMDLKAFNWRLCVIDEAHRLKNRNCKLLEGLRQLNLEHRVLLS 2194
Query: 925 GTPLQNNIGEMYNLLNFLQPASFPSLSSFEEKFNDLTTTQKVEELKKLVAPHMLRRLKKD 984
GTPLQNNI E+++LLNFL+P+ F S F +F L T ++V +L+ L+ P MLRRLK D
Sbjct: 2195 GTPLQNNISELFSLLNFLEPSQFSSQEEFMSEFGSLRTEEEVNKLQALLKPMMLRRLKDD 2254
Query: 985 AMQNIPPKTERMVPVELSSIQAEYYRAMLTKNYQILRNIGKGVAQQSMLNIVMQLRKVCN 1044
+++ PK E ++ VEL++IQ +YYR +L +N+ L+ +++N +M+LRK C
Sbjct: 2255 VEKSLAPKEETIIEVELTNIQKKYYRGILEQNFSFLKKGTTSANIPNLMNTMMELRKCCI 2314
Query: 1045 HPYLIPGTEP----DSGSV-----EFLHEMRIKASAKLTLLHSMLKVLYKEGHRVLIFSQ 1095
HPYL+ G E D S E ++ I ++ K+ L+ +L L GHRVLIFSQ
Sbjct: 2315 HPYLLNGAEEQIQYDFKSQHGEDPESYYKNLILSAGKMVLIDKLLPKLKANGHRVLIFSQ 2374
Query: 1096 MTKLLDILEDYLNIEFGPKTYERVDGSVSVGDRQAAITRFNQDKS-RFVFLLSTRSCGLG 1154
M + LDILEDYL P +ER+DG + RQ AI R+++ S RFVFLL T++ GLG
Sbjct: 2375 MVRCLDILEDYLVYRKYP--FERIDGRIRGNLRQEAIDRYSKPGSDRFVFLLCTKAGGLG 2432
Query: 1155 INLATADTVIIYDSDFNPHADIQAMNRAHRIGQSKRLLVYRLVVRASVEERILQLAKKKL 1214
INL ADTVIIYDSD+NP D+QA R HRIGQ K + +YRL+ R + E + A KL
Sbjct: 2433 INLTAADTVIIYDSDWNPQNDLQAQARCHRIGQRKMVKIYRLLCRNTYEREMFDKASMKL 2492
Query: 1215 MLDQLFVNKSGSQKEVEDILRWGTEELFND--SPGINGKDMGENNTSIEEAVRDLEQKHR 1272
LD+ + +Q + + +++ D G G M ++N + D++ +
Sbjct: 2493 GLDKAVLQSMNTQGSKDGNNKQLSKKEIEDLLKKGAYGAVMDDDNAGDKFCEEDIDSILK 2552
Query: 1273 KR 1274
+R
Sbjct: 2553 RR 2554
Score = 56 (24.8 bits), Expect = 3.8e-116, Sum P(3) = 3.8e-116
Identities = 44/226 (19%), Positives = 86/226 (38%)
Query: 92 SCPRTYHLQCLDPPLKRIPNGKWQCPKCTQKNDQLKPISN--LDSISKRARSKIITIKSQ 149
S P ++HL + L N ND SN +SI + + SQ
Sbjct: 828 STP-SHHLSSI---LNETANSNDSSTLAVAANDSNNSSSNSSTNSIVNNQPTSVHDSNSQ 883
Query: 150 SGVKSSGADKVSQIFGNSILARKRSNKGKSV-LALGVKSLEKSLDSSQVDVSCSTKPENT 208
S + SS ++ + N+ S ++ + +G+ S+ S+ V+ +
Sbjct: 884 SSINSSSNNQQQLLMDNTNSHGGNSESAQNAGVDVGLFD-NNSMSSNSAAVAAVASNAAS 942
Query: 209 SAGVPVEGSSSCPNDDDEKQLNASPTDSLADTKFHPAEEV-LPHSQVTKSEQND-----E 262
+A ++ +S N + EK N S + L + A E LP + + S+ D E
Sbjct: 943 AAAALLDSNSQSSNAEFEK--NQSEGEGLGVVEGVIANETDLPQDENSVSKTQDITLSTE 1000
Query: 263 VPV--EKHEKSSTNGSSGIKFVLAIGASERDRKRKPEVKDEDSQKK 306
+P + ++ T + ++G + +P+ +E + K
Sbjct: 1001 LPTIQDDLQEKPTAEMEQTQLGQSLGDLSKSLLEEPKTVEESGEDK 1046
Score = 54 (24.1 bits), Expect = 1.0e-117, Sum P(4) = 1.0e-117
Identities = 20/67 (29%), Positives = 34/67 (50%)
Query: 1307 SNLQSGSTDLAEGDLENDMLGSVKATEWNEETTED----QAESPVAAVDDASAENSERKE 1362
+ +Q+G D E D+E++ + K T+ E+T D +A+ AA+ A + +E
Sbjct: 3122 TGVQTG--DAGELDIESEKKDNEKETK---ESTGDAPAVEAKKDSAAIARAEGDKTESCT 3176
Query: 1363 ENAVTGI 1369
NA T I
Sbjct: 3177 NNATTNI 3183
Score = 54 (24.1 bits), Expect = 1.0e-117, Sum P(4) = 1.0e-117
Identities = 36/155 (23%), Positives = 58/155 (37%)
Query: 1228 KEVEDILRWGTE-ELFNDSPGINGKDMGENNTSIEEAVRDLEQKHRKRG--------GGL 1278
K ED TE E ++S +N KD T + E + D + K G
Sbjct: 3721 KGKEDFNPETTEKEALDESTNLN-KDKSSTETLVPE-IEDSKPSEDKMEVEELPVAENGE 3778
Query: 1279 GDVYQDKCTEGSTKIVWDENAIARLLDRSNLQSGSTDLAEGDLENDMLGSVKATEWNEET 1338
+ +KC++ K +E + + + D A + E + G +E E+
Sbjct: 3779 KEGSPEKCSDAEDKKFSEEKPSSPAVPDGKVSEMEADEAAPNTEENCSGD---SESPEKE 3835
Query: 1339 TEDQAESPVAAVDDASAENSERKEENAVTGIEENE 1373
ED+ V V++ ENS K E E+ E
Sbjct: 3836 CEDKV---VEKVEEEKGENSYEKAEEQKEETEKLE 3867
Score = 54 (24.1 bits), Expect = 1.0e-117, Sum P(4) = 1.0e-117
Identities = 47/233 (20%), Positives = 95/233 (40%)
Query: 166 NSILARKRSNKGKSVLALGVKSLEK-SLDSSQVDVSCS---TKPENTSAGVPV----EGS 217
+ ++ R ++ ++A VK +K S ++S + T+P++ + G E
Sbjct: 1533 DDVMLRFSDDENSLLVASPVKKDKKPSANASNSNAGSDVEKTEPQSGAEGDAAQEVGEEK 1592
Query: 218 SSCPNDDDEKQLNASPTDSLADTKFHPAEEVLPHSQVTKSEQNDEVPVEKHEKSSTNGSS 277
S+ P D+ + +S T ++A+ + + + + S + + V + ++ S
Sbjct: 1593 SNLPLDESSQLEASSSTSAVAEKERQISTDA---ANAAMSSKPNYVYINTGDEDSMV--- 1646
Query: 278 GIKFVLAIGASERD------RKRKPEVKDEDSQKKLRVDXXXXXXXXXXXXXXXIGTLSP 331
++ VLA+ +R+ +++ PE K ++ + +L D G
Sbjct: 1647 -VQLVLAMRMGKRELILDKPKEKAPEPKQDEEKSEL--DEATTDKPEGDEKFKTEGESKK 1703
Query: 332 GTSKLHE-KQRTNNDEV-SASLCEVDVGTKGLDAQRKDELAEETTDPLDKSDK 382
+ E K ++ EV S E D K D KD+ E D + KSDK
Sbjct: 1704 DLTDSEETKLESSAMEVDSKEESEPDDSKKS-DEDNKDKDKMEVDDEVGKSDK 1755
Score = 50 (22.7 bits), Expect = 2.7e-117, Sum P(4) = 2.7e-117
Identities = 30/137 (21%), Positives = 60/137 (43%)
Query: 1241 LFND---SPGINGKD-MGENNTSIEEAVRDLEQKHRKRGGGLGDVYQDKCTEGSTKIVWD 1296
+FND S G + K + E I+ ++ LE + ++ L +D TE K
Sbjct: 3595 IFNDPNFSFGESEKRFIRELEAQIQRTIK-LEAFNAEKAEKLAAAEKDAATE---KAAAT 3650
Query: 1297 ENAIARLLDRSNLQSGSTDLAEGDLENDMLGSVKA--TEWNEETTEDQAESPVAAVDDAS 1354
E A A +++++ DL + + N+ + ++ T EE +++ D+
Sbjct: 3651 EKAAAE--KAASVKNEVIDLDDELMTNESVIKKESPVTPIKEEIKSEESPEKHDTADNLE 3708
Query: 1355 AENSERKEENAVTGIEE 1371
+NS+ +E + G E+
Sbjct: 3709 DKNSDAEESTKIKGKED 3725
Score = 49 (22.3 bits), Expect = 2.1e-115, Sum P(3) = 2.1e-115
Identities = 21/74 (28%), Positives = 29/74 (39%)
Query: 200 SCSTKPENTSAGVPVEGSSSCPNDDDEKQLNASPTDSLADTKFHPAEEVLPHSQVTKSEQ 259
S + E TS G V+G S P D D+ ++ P S D K A + S +
Sbjct: 1384 SADGEAETTSGGTGVDGES--P-DYDDIPVSKIPRGSNEDEKEAEAGDETVDSVPDSAGD 1440
Query: 260 NDEVPVEKHEKSST 273
P + K ST
Sbjct: 1441 PASTPSRRDRKRST 1454
Score = 47 (21.6 bits), Expect = 1.0e-117, Sum P(4) = 1.0e-117
Identities = 24/85 (28%), Positives = 37/85 (43%)
Query: 103 DPPLKRIPNGKWQCPKCTQKNDQLK---PISNLDSISKRARS--KIITIKSQSGVKSSGA 157
D P+ +IP G + K + D+ P S D S +R K T +S+ S
Sbjct: 1407 DIPVSKIPRGSNEDEKEAEAGDETVDSVPDSAGDPASTPSRRDRKRSTARSRRNANSEEG 1466
Query: 158 DKVSQIFGN-SILA-RKRSNKGKSV 180
+ G+ S A +KR N+G+ V
Sbjct: 1467 GSARKNRGSLSAKALKKRRNRGRIV 1491
Score = 47 (21.6 bits), Expect = 5.5e-117, Sum P(4) = 5.5e-117
Identities = 14/37 (37%), Positives = 22/37 (59%)
Query: 1237 GTEELFNDSPGINGKDMGENNTSIEEAVRDLEQKHRK 1273
G + +D+ +N K M +NN +IEE V E+K +K
Sbjct: 4288 GNKSKLDDT--LN-KLMKKNNCTIEEPVIGKEKKRKK 4321
Score = 42 (19.8 bits), Expect = 1.8e-116, Sum P(4) = 1.8e-116
Identities = 7/29 (24%), Positives = 19/29 (65%)
Query: 1201 SVEERILQLAKKKLMLDQLFVNKSGSQKE 1229
++EE ++ KK+ LD++ + S ++++
Sbjct: 4307 TIEEPVIGKEKKRKKLDEIVLGLSAAKEQ 4335
Score = 42 (19.8 bits), Expect = 1.8e-116, Sum P(4) = 1.8e-116
Identities = 9/35 (25%), Positives = 19/35 (54%)
Query: 1340 EDQAESPVAAVDDASAENSERKEENAVTGIEENEW 1374
E + S ++ ++AS N + + EN T + E+ +
Sbjct: 3022 ERPSSSGKSSSENASGGNDKTESENDATTVSESSY 3056
Score = 41 (19.5 bits), Expect = 1.4e-114, Sum P(3) = 1.4e-114
Identities = 11/54 (20%), Positives = 20/54 (37%)
Query: 206 ENTSAGVPVEGSSSCPNDDDEKQLNASPTDSLADTKFHPAEEVLPHSQVTKSEQ 259
++ G P S +QL A L + A++ PH + + +Q
Sbjct: 284 QHVPGGAPPGHHLSAQQQQAAQQLGAHQQQQLQSQQQQQAQQQQPHVSLMQQQQ 337
Score = 40 (19.1 bits), Expect = 5.5e-117, Sum P(4) = 5.5e-117
Identities = 7/26 (26%), Positives = 16/26 (61%)
Query: 45 PRNTPSAKRRLKNEINADRSSTKKKG 70
P +TPS + R ++ + R++ ++G
Sbjct: 1441 PASTPSRRDRKRSTARSRRNANSEEG 1466
Score = 40 (19.1 bits), Expect = 3.0e-116, Sum P(4) = 3.0e-116
Identities = 6/24 (25%), Positives = 14/24 (58%)
Query: 1250 GKDMGENNTSIEEAVRDLEQKHRK 1273
G + E+ +E + ++E++H K
Sbjct: 3509 GLKLSESERGLEGIIEEIEKEHAK 3532
>UNIPROTKB|F1RN66 [details] [associations]
symbol:CHD1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 GeneTree:ENSGT00560000076896
EMBL:CU570924 EMBL:CU928692 Ensembl:ENSSSCT00000015489
Uniprot:F1RN66
Length = 1794
Score = 1088 (388.1 bits), Expect = 1.9e-117, Sum P(4) = 1.9e-117
Identities = 278/742 (37%), Positives = 405/742 (54%)
Query: 517 EDDKDSD--PVAVNGKVQDESAVSTEDLGERNDKMVVEDADVSLRDNEGLTVSEIHITCE 574
++DK S VN +++ + T+ +D + V DV + E E + C
Sbjct: 220 DNDKRSSRRQATVNVSYKEDEEMKTDS----DDLLEVCGEDVPQPEEEEFETIERFMDCR 275
Query: 575 STDKDVDVGKKTSGSVAKRVQEP-AVTESAQVKGKAVSYEFLVKWVGKSNIHNSWIPESQ 633
K G T+ + +P A E + G+ ++L+KW G S+IHN+W E
Sbjct: 276 IGRKGA-TGATTTIYAVEADGDPNAGFEKNKEPGEI---QYLIKWKGWSHIHNTWETEET 331
Query: 634 LK---VLAKRKLENYKAK-----------------YGTTVINICDERWKQPQ---RVISL 670
LK V +KL+NYK K Y + D+ KQ Q R+I+
Sbjct: 332 LKQQNVRGMKKLDNYKKKDQETKRWLKNASPEDVEYYNCQQELTDDLHKQYQIVERIIAH 391
Query: 671 RSSKD--GTREAFVKWTGLPYDECTWEKLDEPAL-EKYSHLTDLFVQFERQTLKKDASED 727
+ K G + + KW GLPY EC+WE D + +K+ D + F R K +D
Sbjct: 392 SNQKSAAGYPDYYCKWQGLPYSECSWE--DGALISKKFQACIDEY--FSRNQSKTTPFKD 447
Query: 728 ELPRGKGDCQQSEIVALTEQPEELKG--GA-LFPHQLEALNWLRKCWHKSKNVILADEMG 784
K Q+ VAL +QP + G G L +QL LNWL W K + ILADEMG
Sbjct: 448 ----CKVLKQRPRFVALKKQPSYIGGHEGLELRDYQLNGLNWLAHSWCKGNSCILADEMG 503
Query: 785 LGKTVSACAFISSLYCEFKAKLPCLVLVPLSTMPNWLAEFALWAPNLNVVEYHGCAKARA 844
LGKT+ +F++ L+ E + P L++VPLST+ +W E WA +N V Y G +R
Sbjct: 504 LGKTIQTISFLNYLFHEHQLYGPFLLVVPLSTLTSWQREIQTWASQMNAVVYLGDINSRN 563
Query: 845 IIRQYEWHASDPDNLNKKTSSYKFNVLLTTYEMILADSSHLRGVPWEVLVVDEGHRXXXX 904
+IR +EW ++ +T KFN+LLTTYE++L D + L G+ W + VDE HR
Sbjct: 564 MIRTHEW-------MHPQTKRLKFNILLTTYEILLKDKAFLGGLNWAFIGVDEAHRLKND 616
Query: 905 XXXXXXXXXXXXXQHRVLLTGTPLQNNIGEMYNLLNFLQPASFPSLSSFEEKFNDLTTTQ 964
HR+L+TGTPLQN++ E+++LL+F+ P F S FEE+
Sbjct: 617 DSLLYKTLIDFKSNHRLLITGTPLQNSLKELWSLLHFIMPEKFSSWEDFEEEHGK-GREY 675
Query: 965 KVEELKKLVAPHMLRRLKKDAMQNIPPKTERMVPVELSSIQAEYYRAMLTKNYQILRNIG 1024
L K + P +LRR+KKD +++P K E+++ +E+S++Q +YY+ +LT+NY+ L
Sbjct: 676 GYASLHKELEPFLLRRVKKDVEKSLPAKVEQILRMEMSALQKQYYKWILTRNYKALSKGS 735
Query: 1025 KGVAQQSMLNIVMQLRKVCNHPYLI--PGTEPDSGSVEFLHEMRIKASAKLTLLHSMLKV 1082
KG + LNI+M+L+K CNH YLI P E L + I++S KL LL +L
Sbjct: 736 KG-STSGFLNIMMELKKCCNHCYLIKPPDNNEFYNKQEALQHL-IRSSGKLILLDKLLIR 793
Query: 1083 LYKEGHRVLIFSQMTKLLDILEDYLNIEFGPKTYERVDGSVSVGDRQAAITRFNQDKSR- 1141
L + G+RVLIFSQM ++LDIL +YL P ++R+DGS+ R+ A+ FN + S
Sbjct: 794 LRERGNRVLIFSQMVRMLDILAEYLKYRQFP--FQRLDGSIKGELRKQALDHFNAEGSED 851
Query: 1142 FVFLLSTRSCGLGINLATADTVIIYDSDFNPHADIQAMNRAHRIGQSKRLLVYRLVVRAS 1201
F FLLSTR+ GLGINLA+ADTV+I+DSD+NP D+QA RAHR G ++ +YRLV + S
Sbjct: 852 FCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRHGYLSQVNIYRLVTKGS 911
Query: 1202 VEERILQLAKKKLMLDQLFVNK 1223
VEE IL+ AKKK++LD L + +
Sbjct: 912 VEEDILERAKKKMVLDHLVIQR 933
Score = 58 (25.5 bits), Expect = 1.9e-117, Sum P(4) = 1.9e-117
Identities = 18/57 (31%), Positives = 30/57 (52%)
Query: 1226 SQKEVEDILRWGTEELFNDSPGINGKDMGENNTSIEEAVRDLEQKHRKRGGGL--GD 1280
+++E+ IL++G EELF + P G++ I+E ++ E H G L GD
Sbjct: 955 NKEELSAILKFGAEELFKE-P--EGEEQEPQEMDIDEILKRAET-HENEPGPLTVGD 1007
Score = 56 (24.8 bits), Expect = 1.9e-117, Sum P(4) = 1.9e-117
Identities = 29/118 (24%), Positives = 44/118 (37%)
Query: 191 SLDSSQVDVSCSTKPENTSAGVPVEGSSSCPNDDD--EKQLNASP--TDSLADTKFHPAE 246
S S D S S + S GS S D+ E ++ A P D K P+
Sbjct: 34 SSSGSSSDGSSSQSGSSDSDSGSESGSQSESESDNSRENKVQAKPPKVDGAEFWKSSPSI 93
Query: 247 EVLPHSQVTKSEQNDEVPVEKHEKSSTNGSSGIKFVLAIGASERDRKRKPEVKDEDSQ 304
+ S + K +Q ++H+ SS +GS ++ + KDED Q
Sbjct: 94 LAVQRSAMLKKQQQ-----QQHQASSNSGSEEDSSSSEDSDDSSSEVKRKKHKDEDWQ 146
Score = 54 (24.1 bits), Expect = 3.3e-115, Sum P(3) = 3.3e-115
Identities = 29/104 (27%), Positives = 40/104 (38%)
Query: 1265 RDLEQKHRKRGGGLGDVYQDKCTEGSTKIVWDENAIARLL-DRSNLQSGSTDLAEGDLEN 1323
+DL +K +R G G + K K + + D S L S +D E D +
Sbjct: 1309 KDLARKEAQRLSGAGGSKRRKARAKKNKAMKSIKVKEEIKSDSSPLPSEKSD--EDD-DK 1365
Query: 1324 DMLGSVKATEWNEETTEDQAESPV--AAVDDASAENSERKE-EN 1364
D + SVK +T D E P + E E KE EN
Sbjct: 1366 DEITSVKHPNKKIKTEGDSEEKPEPDVCIKKEPEEKREAKEKEN 1409
Score = 45 (20.9 bits), Expect = 2.7e-116, Sum P(4) = 2.7e-116
Identities = 13/54 (24%), Positives = 31/54 (57%)
Query: 5 SSSTSTMINRNWVLKRKRRKLPCGPGLSNGKEENLVTSESPRNTPSAKRRLKNE 58
SS + + R+ +LK+++++ ++G EE+ +SE ++ S +R K++
Sbjct: 89 SSPSILAVQRSAMLKKQQQQQHQASS-NSGSEEDSSSSEDSDDSSSEVKRKKHK 141
Score = 44 (20.5 bits), Expect = 3.4e-116, Sum P(4) = 3.4e-116
Identities = 13/48 (27%), Positives = 23/48 (47%)
Query: 189 EKSLDSSQVDVSCSTKPENTSAGVPVEGSSSCPNDDDEKQLNASPTDS 236
E+S+ +S + S S +++G SS +D Q +S +DS
Sbjct: 7 EESVRNSSGESSQSDDDSGSASGSGSGSSSGSSSDGSSSQSGSSDSDS 54
Score = 42 (19.8 bits), Expect = 5.6e-116, Sum P(4) = 5.6e-116
Identities = 17/52 (32%), Positives = 26/52 (50%)
Query: 193 DSSQVDV---SCSTKPENTSAGVPVEGSSSCP--NDDDEKQLNASPTDSLAD 239
+SSQ D S S +S+G +GSSS +D D + S ++S +D
Sbjct: 16 ESSQSDDDSGSASGSGSGSSSGSSSDGSSSQSGSSDSDSGSESGSQSESESD 67
Score = 37 (18.1 bits), Expect = 1.9e-117, Sum P(4) = 1.9e-117
Identities = 11/45 (24%), Positives = 22/45 (48%)
Query: 1329 VKATEWNEETTEDQAESPVAAVDDASAENSERKEENAVTGIEENE 1373
+K + NE +E + S +++ DA + E ++ EE+E
Sbjct: 1449 IKEEKLNESKSESKERSKKSSLSDAPVHITASGEPVPIS--EESE 1491
>UNIPROTKB|I3L6N4 [details] [associations]
symbol:CHD1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 GeneTree:ENSGT00560000076896
EMBL:CU570924 EMBL:CU928692 Ensembl:ENSSSCT00000022643
Uniprot:I3L6N4
Length = 1798
Score = 1088 (388.1 bits), Expect = 2.0e-117, Sum P(4) = 2.0e-117
Identities = 278/742 (37%), Positives = 405/742 (54%)
Query: 517 EDDKDSD--PVAVNGKVQDESAVSTEDLGERNDKMVVEDADVSLRDNEGLTVSEIHITCE 574
++DK S VN +++ + T+ +D + V DV + E E + C
Sbjct: 220 DNDKRSSRRQATVNVSYKEDEEMKTDS----DDLLEVCGEDVPQPEEEEFETIERFMDCR 275
Query: 575 STDKDVDVGKKTSGSVAKRVQEP-AVTESAQVKGKAVSYEFLVKWVGKSNIHNSWIPESQ 633
K G T+ + +P A E + G+ ++L+KW G S+IHN+W E
Sbjct: 276 IGRKGA-TGATTTIYAVEADGDPNAGFEKNKEPGEI---QYLIKWKGWSHIHNTWETEET 331
Query: 634 LK---VLAKRKLENYKAK-----------------YGTTVINICDERWKQPQ---RVISL 670
LK V +KL+NYK K Y + D+ KQ Q R+I+
Sbjct: 332 LKQQNVRGMKKLDNYKKKDQETKRWLKNASPEDVEYYNCQQELTDDLHKQYQIVERIIAH 391
Query: 671 RSSKD--GTREAFVKWTGLPYDECTWEKLDEPAL-EKYSHLTDLFVQFERQTLKKDASED 727
+ K G + + KW GLPY EC+WE D + +K+ D + F R K +D
Sbjct: 392 SNQKSAAGYPDYYCKWQGLPYSECSWE--DGALISKKFQACIDEY--FSRNQSKTTPFKD 447
Query: 728 ELPRGKGDCQQSEIVALTEQPEELKG--GA-LFPHQLEALNWLRKCWHKSKNVILADEMG 784
K Q+ VAL +QP + G G L +QL LNWL W K + ILADEMG
Sbjct: 448 ----CKVLKQRPRFVALKKQPSYIGGHEGLELRDYQLNGLNWLAHSWCKGNSCILADEMG 503
Query: 785 LGKTVSACAFISSLYCEFKAKLPCLVLVPLSTMPNWLAEFALWAPNLNVVEYHGCAKARA 844
LGKT+ +F++ L+ E + P L++VPLST+ +W E WA +N V Y G +R
Sbjct: 504 LGKTIQTISFLNYLFHEHQLYGPFLLVVPLSTLTSWQREIQTWASQMNAVVYLGDINSRN 563
Query: 845 IIRQYEWHASDPDNLNKKTSSYKFNVLLTTYEMILADSSHLRGVPWEVLVVDEGHRXXXX 904
+IR +EW ++ +T KFN+LLTTYE++L D + L G+ W + VDE HR
Sbjct: 564 MIRTHEW-------MHPQTKRLKFNILLTTYEILLKDKAFLGGLNWAFIGVDEAHRLKND 616
Query: 905 XXXXXXXXXXXXXQHRVLLTGTPLQNNIGEMYNLLNFLQPASFPSLSSFEEKFNDLTTTQ 964
HR+L+TGTPLQN++ E+++LL+F+ P F S FEE+
Sbjct: 617 DSLLYKTLIDFKSNHRLLITGTPLQNSLKELWSLLHFIMPEKFSSWEDFEEEHGK-GREY 675
Query: 965 KVEELKKLVAPHMLRRLKKDAMQNIPPKTERMVPVELSSIQAEYYRAMLTKNYQILRNIG 1024
L K + P +LRR+KKD +++P K E+++ +E+S++Q +YY+ +LT+NY+ L
Sbjct: 676 GYASLHKELEPFLLRRVKKDVEKSLPAKVEQILRMEMSALQKQYYKWILTRNYKALSKGS 735
Query: 1025 KGVAQQSMLNIVMQLRKVCNHPYLI--PGTEPDSGSVEFLHEMRIKASAKLTLLHSMLKV 1082
KG + LNI+M+L+K CNH YLI P E L + I++S KL LL +L
Sbjct: 736 KG-STSGFLNIMMELKKCCNHCYLIKPPDNNEFYNKQEALQHL-IRSSGKLILLDKLLIR 793
Query: 1083 LYKEGHRVLIFSQMTKLLDILEDYLNIEFGPKTYERVDGSVSVGDRQAAITRFNQDKSR- 1141
L + G+RVLIFSQM ++LDIL +YL P ++R+DGS+ R+ A+ FN + S
Sbjct: 794 LRERGNRVLIFSQMVRMLDILAEYLKYRQFP--FQRLDGSIKGELRKQALDHFNAEGSED 851
Query: 1142 FVFLLSTRSCGLGINLATADTVIIYDSDFNPHADIQAMNRAHRIGQSKRLLVYRLVVRAS 1201
F FLLSTR+ GLGINLA+ADTV+I+DSD+NP D+QA RAHR G ++ +YRLV + S
Sbjct: 852 FCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRHGYLSQVNIYRLVTKGS 911
Query: 1202 VEERILQLAKKKLMLDQLFVNK 1223
VEE IL+ AKKK++LD L + +
Sbjct: 912 VEEDILERAKKKMVLDHLVIQR 933
Score = 58 (25.5 bits), Expect = 2.0e-117, Sum P(4) = 2.0e-117
Identities = 18/57 (31%), Positives = 30/57 (52%)
Query: 1226 SQKEVEDILRWGTEELFNDSPGINGKDMGENNTSIEEAVRDLEQKHRKRGGGL--GD 1280
+++E+ IL++G EELF + P G++ I+E ++ E H G L GD
Sbjct: 955 NKEELSAILKFGAEELFKE-P--EGEEQEPQEMDIDEILKRAET-HENEPGPLTVGD 1007
Score = 56 (24.8 bits), Expect = 2.0e-117, Sum P(4) = 2.0e-117
Identities = 29/118 (24%), Positives = 44/118 (37%)
Query: 191 SLDSSQVDVSCSTKPENTSAGVPVEGSSSCPNDDD--EKQLNASP--TDSLADTKFHPAE 246
S S D S S + S GS S D+ E ++ A P D K P+
Sbjct: 34 SSSGSSSDGSSSQSGSSDSDSGSESGSQSESESDNSRENKVQAKPPKVDGAEFWKSSPSI 93
Query: 247 EVLPHSQVTKSEQNDEVPVEKHEKSSTNGSSGIKFVLAIGASERDRKRKPEVKDEDSQ 304
+ S + K +Q ++H+ SS +GS ++ + KDED Q
Sbjct: 94 LAVQRSAMLKKQQQ-----QQHQASSNSGSEEDSSSSEDSDDSSSEVKRKKHKDEDWQ 146
Score = 45 (20.9 bits), Expect = 2.8e-116, Sum P(4) = 2.8e-116
Identities = 13/54 (24%), Positives = 31/54 (57%)
Query: 5 SSSTSTMINRNWVLKRKRRKLPCGPGLSNGKEENLVTSESPRNTPSAKRRLKNE 58
SS + + R+ +LK+++++ ++G EE+ +SE ++ S +R K++
Sbjct: 89 SSPSILAVQRSAMLKKQQQQQHQASS-NSGSEEDSSSSEDSDDSSSEVKRKKHK 141
Score = 44 (20.5 bits), Expect = 3.6e-116, Sum P(4) = 3.6e-116
Identities = 13/48 (27%), Positives = 23/48 (47%)
Query: 189 EKSLDSSQVDVSCSTKPENTSAGVPVEGSSSCPNDDDEKQLNASPTDS 236
E+S+ +S + S S +++G SS +D Q +S +DS
Sbjct: 7 EESVRNSSGESSQSDDDSGSASGSGSGSSSGSSSDGSSSQSGSSDSDS 54
Score = 42 (19.8 bits), Expect = 5.9e-116, Sum P(4) = 5.9e-116
Identities = 17/52 (32%), Positives = 26/52 (50%)
Query: 193 DSSQVDV---SCSTKPENTSAGVPVEGSSSCP--NDDDEKQLNASPTDSLAD 239
+SSQ D S S +S+G +GSSS +D D + S ++S +D
Sbjct: 16 ESSQSDDDSGSASGSGSGSSSGSSSDGSSSQSGSSDSDSGSESGSQSESESD 67
Score = 37 (18.1 bits), Expect = 2.0e-117, Sum P(4) = 2.0e-117
Identities = 11/45 (24%), Positives = 22/45 (48%)
Query: 1329 VKATEWNEETTEDQAESPVAAVDDASAENSERKEENAVTGIEENE 1373
+K + NE +E + S +++ DA + E ++ EE+E
Sbjct: 1453 IKEEKLNESKSESKERSKKSSLSDAPVHITASGEPVPIS--EESE 1495
>UNIPROTKB|I3LIS2 [details] [associations]
symbol:CHD1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0035064 "methylated histone residue binding"
evidence=IEA] [GO:0006338 "chromatin remodeling" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
GO:GO:0006338 GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
InterPro:IPR023779 PROSITE:PS00598 InterPro:IPR025260 Pfam:PF13907
GeneTree:ENSGT00560000076896 OMA:AETHENE EMBL:CU570924
EMBL:CU928692 Ensembl:ENSSSCT00000032432 Uniprot:I3LIS2
Length = 1799
Score = 1088 (388.1 bits), Expect = 2.0e-117, Sum P(4) = 2.0e-117
Identities = 278/742 (37%), Positives = 405/742 (54%)
Query: 517 EDDKDSD--PVAVNGKVQDESAVSTEDLGERNDKMVVEDADVSLRDNEGLTVSEIHITCE 574
++DK S VN +++ + T+ +D + V DV + E E + C
Sbjct: 221 DNDKRSSRRQATVNVSYKEDEEMKTDS----DDLLEVCGEDVPQPEEEEFETIERFMDCR 276
Query: 575 STDKDVDVGKKTSGSVAKRVQEP-AVTESAQVKGKAVSYEFLVKWVGKSNIHNSWIPESQ 633
K G T+ + +P A E + G+ ++L+KW G S+IHN+W E
Sbjct: 277 IGRKGA-TGATTTIYAVEADGDPNAGFEKNKEPGEI---QYLIKWKGWSHIHNTWETEET 332
Query: 634 LK---VLAKRKLENYKAK-----------------YGTTVINICDERWKQPQ---RVISL 670
LK V +KL+NYK K Y + D+ KQ Q R+I+
Sbjct: 333 LKQQNVRGMKKLDNYKKKDQETKRWLKNASPEDVEYYNCQQELTDDLHKQYQIVERIIAH 392
Query: 671 RSSKD--GTREAFVKWTGLPYDECTWEKLDEPAL-EKYSHLTDLFVQFERQTLKKDASED 727
+ K G + + KW GLPY EC+WE D + +K+ D + F R K +D
Sbjct: 393 SNQKSAAGYPDYYCKWQGLPYSECSWE--DGALISKKFQACIDEY--FSRNQSKTTPFKD 448
Query: 728 ELPRGKGDCQQSEIVALTEQPEELKG--GA-LFPHQLEALNWLRKCWHKSKNVILADEMG 784
K Q+ VAL +QP + G G L +QL LNWL W K + ILADEMG
Sbjct: 449 ----CKVLKQRPRFVALKKQPSYIGGHEGLELRDYQLNGLNWLAHSWCKGNSCILADEMG 504
Query: 785 LGKTVSACAFISSLYCEFKAKLPCLVLVPLSTMPNWLAEFALWAPNLNVVEYHGCAKARA 844
LGKT+ +F++ L+ E + P L++VPLST+ +W E WA +N V Y G +R
Sbjct: 505 LGKTIQTISFLNYLFHEHQLYGPFLLVVPLSTLTSWQREIQTWASQMNAVVYLGDINSRN 564
Query: 845 IIRQYEWHASDPDNLNKKTSSYKFNVLLTTYEMILADSSHLRGVPWEVLVVDEGHRXXXX 904
+IR +EW ++ +T KFN+LLTTYE++L D + L G+ W + VDE HR
Sbjct: 565 MIRTHEW-------MHPQTKRLKFNILLTTYEILLKDKAFLGGLNWAFIGVDEAHRLKND 617
Query: 905 XXXXXXXXXXXXXQHRVLLTGTPLQNNIGEMYNLLNFLQPASFPSLSSFEEKFNDLTTTQ 964
HR+L+TGTPLQN++ E+++LL+F+ P F S FEE+
Sbjct: 618 DSLLYKTLIDFKSNHRLLITGTPLQNSLKELWSLLHFIMPEKFSSWEDFEEEHGK-GREY 676
Query: 965 KVEELKKLVAPHMLRRLKKDAMQNIPPKTERMVPVELSSIQAEYYRAMLTKNYQILRNIG 1024
L K + P +LRR+KKD +++P K E+++ +E+S++Q +YY+ +LT+NY+ L
Sbjct: 677 GYASLHKELEPFLLRRVKKDVEKSLPAKVEQILRMEMSALQKQYYKWILTRNYKALSKGS 736
Query: 1025 KGVAQQSMLNIVMQLRKVCNHPYLI--PGTEPDSGSVEFLHEMRIKASAKLTLLHSMLKV 1082
KG + LNI+M+L+K CNH YLI P E L + I++S KL LL +L
Sbjct: 737 KG-STSGFLNIMMELKKCCNHCYLIKPPDNNEFYNKQEALQHL-IRSSGKLILLDKLLIR 794
Query: 1083 LYKEGHRVLIFSQMTKLLDILEDYLNIEFGPKTYERVDGSVSVGDRQAAITRFNQDKSR- 1141
L + G+RVLIFSQM ++LDIL +YL P ++R+DGS+ R+ A+ FN + S
Sbjct: 795 LRERGNRVLIFSQMVRMLDILAEYLKYRQFP--FQRLDGSIKGELRKQALDHFNAEGSED 852
Query: 1142 FVFLLSTRSCGLGINLATADTVIIYDSDFNPHADIQAMNRAHRIGQSKRLLVYRLVVRAS 1201
F FLLSTR+ GLGINLA+ADTV+I+DSD+NP D+QA RAHR G ++ +YRLV + S
Sbjct: 853 FCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRHGYLSQVNIYRLVTKGS 912
Query: 1202 VEERILQLAKKKLMLDQLFVNK 1223
VEE IL+ AKKK++LD L + +
Sbjct: 913 VEEDILERAKKKMVLDHLVIQR 934
Score = 58 (25.5 bits), Expect = 2.0e-117, Sum P(4) = 2.0e-117
Identities = 18/57 (31%), Positives = 30/57 (52%)
Query: 1226 SQKEVEDILRWGTEELFNDSPGINGKDMGENNTSIEEAVRDLEQKHRKRGGGL--GD 1280
+++E+ IL++G EELF + P G++ I+E ++ E H G L GD
Sbjct: 956 NKEELSAILKFGAEELFKE-P--EGEEQEPQEMDIDEILKRAET-HENEPGPLTVGD 1008
Score = 56 (24.8 bits), Expect = 2.0e-117, Sum P(4) = 2.0e-117
Identities = 29/118 (24%), Positives = 44/118 (37%)
Query: 191 SLDSSQVDVSCSTKPENTSAGVPVEGSSSCPNDDD--EKQLNASP--TDSLADTKFHPAE 246
S S D S S + S GS S D+ E ++ A P D K P+
Sbjct: 35 SSSGSSSDGSSSQSGSSDSDSGSESGSQSESESDNSRENKVQAKPPKVDGAEFWKSSPSI 94
Query: 247 EVLPHSQVTKSEQNDEVPVEKHEKSSTNGSSGIKFVLAIGASERDRKRKPEVKDEDSQ 304
+ S + K +Q ++H+ SS +GS ++ + KDED Q
Sbjct: 95 LAVQRSAMLKKQQQ-----QQHQASSNSGSEEDSSSSEDSDDSSSEVKRKKHKDEDWQ 147
Score = 45 (20.9 bits), Expect = 2.9e-116, Sum P(4) = 2.9e-116
Identities = 13/54 (24%), Positives = 31/54 (57%)
Query: 5 SSSTSTMINRNWVLKRKRRKLPCGPGLSNGKEENLVTSESPRNTPSAKRRLKNE 58
SS + + R+ +LK+++++ ++G EE+ +SE ++ S +R K++
Sbjct: 90 SSPSILAVQRSAMLKKQQQQQHQASS-NSGSEEDSSSSEDSDDSSSEVKRKKHK 142
Score = 42 (19.8 bits), Expect = 5.9e-116, Sum P(4) = 5.9e-116
Identities = 18/58 (31%), Positives = 27/58 (46%)
Query: 184 GVKSLEKSLDSSQVDVSCSTKPENTSAGVPVEGSSSCP--NDDDEKQLNASPTDSLAD 239
G K +S D S S S +S+G +GSSS +D D + S ++S +D
Sbjct: 14 GGKDCSQSDDDSG---SASGSGSGSSSGSSSDGSSSQSGSSDSDSGSESGSQSESESD 68
Score = 37 (18.1 bits), Expect = 2.0e-117, Sum P(4) = 2.0e-117
Identities = 11/45 (24%), Positives = 22/45 (48%)
Query: 1329 VKATEWNEETTEDQAESPVAAVDDASAENSERKEENAVTGIEENE 1373
+K + NE +E + S +++ DA + E ++ EE+E
Sbjct: 1454 IKEEKLNESKSESKERSKKSSLSDAPVHITASGEPVPIS--EESE 1496
>UNIPROTKB|J9P0F6 [details] [associations]
symbol:CHD6 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR002464 InterPro:IPR006576
Pfam:PF00176 Pfam:PF00271 Pfam:PF07533 PROSITE:PS00690
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
SMART:SM00717 Pfam:PF00385 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0003682 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR023780 CTD:84181 KO:K14436 GeneTree:ENSGT00560000077077
EMBL:AAEX03013942 EMBL:AAEX03013943 RefSeq:XP_534421.3
Ensembl:ENSCAFT00000048852 GeneID:477230 KEGG:cfa:477230
Uniprot:J9P0F6
Length = 2715
Score = 1126 (401.4 bits), Expect = 1.7e-115, Sum P(3) = 1.7e-115
Identities = 310/901 (34%), Positives = 458/901 (50%)
Query: 474 SSDEECMKNDIGVDRI-QVYRRSVTKE---CKVTKECKGENAIDLLREDDKDSDPVAVNG 529
S +E + G D + + +KE V ++ KG+ + E + D N
Sbjct: 161 SGTKEAKEKRSGADTAARTKSKKASKEQGPTPVERKKKGKRKSETTVES-LELDQGLPNS 219
Query: 530 KVQ--DESAVSTEDLGERNDKMVV-----EDADVSLRDNEGLTVSEIH------ITCEST 576
++ +ES S + R+ + V ED D + D++G T++ + ++ +
Sbjct: 220 SLRSPEESTESADSQKRRSGRQVKRRKYNEDLDFKVVDDDGETIAVLGAGRTSALSASTL 279
Query: 577 DKDVDVGKKTSGSVAKRVQEPAVTESAQVKGKAVSYE-FLVKWVGKSNIHNSWIPESQLK 635
+ + ++ +++ + E F VK+ S +H W +L+
Sbjct: 280 AWQAEEPPEDDANIIEKILASKTVQEVHPGEPPFDLELFYVKYRNFSYLHCKWATMEELE 339
Query: 636 VLAK--RKLENYKAKYGTT--VINICDERWKQPQ-----RVISLRSSKDG-TREA----F 681
+ +K++ ++ K + DE P RV+ + +KD T E
Sbjct: 340 KDPRIAQKIKRFRNKQAQMKHIFTEPDEDLFNPDYVEVDRVLEVAHTKDAETGEEVTHYL 399
Query: 682 VKWTGLPYDECTWEKLDEPALEKYSHLTDLFVQFERQTLKKDASEDELPRGKGDCQQSEI 741
VKW LPY+E TWE ++ K L V E + +++ AS D Q
Sbjct: 400 VKWCSLPYEESTWELEEDVDPAKVKEFESLQVLPEIKHVERPAS---------DSWQK-- 448
Query: 742 VALTEQPEELKGGALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCE 801
L + E L +QLE +NWL W+ KN ILADEMGLGKT+ + F+S ++
Sbjct: 449 --LEKSREYKNSNQLREYQLEGMNWLLFNWYNRKNCILADEMGLGKTIQSITFLSEIFLR 506
Query: 802 FKAKLPCLVLVPLSTMPNWLAEFALWAPNLNVVEYHGCAKARAIIRQYEWHASDPDNLNK 861
P L++ PLST+ NW EF W +N + YHG +R +I+QYE D N
Sbjct: 507 -GIHGPFLIIAPLSTITNWEREFRTWT-EMNAIVYHGSQISRQMIQQYEMVYRDAQG-NP 563
Query: 862 KTSSYKFNVLLTTYEMILADSSHLRGVPWEVLVVDEGHRXXXXXXXXXXXXXXXXXQHRV 921
+ +KF+V++TT+EMILAD L+ + W +++DE HR +H+V
Sbjct: 564 LSGVFKFHVVITTFEMILADCPELKKIHWSCVIIDEAHRLKNRNCKLLEGLKLMALEHKV 623
Query: 922 LLTGTPLQNNIGEMYNLLNFLQPASFPSLSSFEEKFNDLTTTQKVEELKKLVAPHMLRRL 981
LLTGTPLQN++ E+++LLNFL+P+ FPS ++F E+F DL T ++V++L+ ++ P MLRRL
Sbjct: 624 LLTGTPLQNSVEELFSLLNFLEPSQFPSETAFLEEFGDLKTEEQVKKLQSILKPMMLRRL 683
Query: 982 KKDAMQNIPPKTERMVPVELSSIQAEYYRAMLTKNYQILRNIGKGVAQQSMLNIV---MQ 1038
K D +N+ PK E ++ VEL++IQ +YYRA+L KN+ L KG Q +M N++ M+
Sbjct: 684 KDDVEKNLAPKQETIIEVELTNIQKKYYRAILEKNFSFLT---KGANQHNMPNLINTMME 740
Query: 1039 LRKVCNHPYLIPGTE------------PDSGSVEFLHEMRIKASAKLTLLHSMLKVLYKE 1086
LRK CNHPYLI G E PD+ +F + I+A+ KL L+ +L L
Sbjct: 741 LRKCCNHPYLINGAEEKILEDFRKTHSPDAP--DFQLQAMIQAAGKLVLIDKLLPKLIAG 798
Query: 1087 GHRVLIFSQMTKLLDILEDYLNIEFGPKTYERVDGSVSVGDRQAAITRF-NQDKSRFVFL 1145
GH+VLIFSQM + LDILEDYL I+ TYER+DG V RQAAI RF D RFVFL
Sbjct: 799 GHKVLIFSQMVRCLDILEDYL-IQ-RRYTYERIDGRVRGNLRQAAIDRFCKPDSDRFVFL 856
Query: 1146 LSTRSCGLGINLATADTVIIYDSDFNPHADIQAMNRAHRIGQSKRLLVYRLVVRASVEER 1205
L TR+ GLGINL ADT II+DSD+NP D+QA R HRIGQSK + VYRL+ R S E
Sbjct: 857 LCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVKVYRLITRNSYERE 916
Query: 1206 ILQLAKKKLMLDQLF---VNKSGSQKEVEDILRWGTEELFNDSPGINGKDMGENNTSIEE 1262
+ A KL LD+ +N+ GS V+ + + E+L G G M E + +
Sbjct: 917 MFDKASLKLGLDKAVLQDINRKGSTNGVQQLSKMEVEDLLRK--GAYGALMDEEDEGSKF 974
Query: 1263 AVRDLEQKHRKRGGGLGDVYQDK-CTEGSTKIVWDENAIARLLDRSNLQSGSTDLAEGDL 1321
D++Q ++R + + K T V N LD N +AE D
Sbjct: 975 CEEDIDQILQRRTHTITIQSEGKGSTFAKASFVASGNRTDISLDDPNFWQKWAKIAELDT 1034
Query: 1322 E 1322
E
Sbjct: 1035 E 1035
Score = 46 (21.3 bits), Expect = 1.7e-115, Sum P(3) = 1.7e-115
Identities = 22/73 (30%), Positives = 35/73 (47%)
Query: 1304 LDRSNLQSGSTDLAEGDLENDMLGSVKATEWNEETTEDQA-ESPVAAVDDAS--AENSER 1360
LD+ N +SG D+ + D S+ + + + ED++ ES +A S E E
Sbjct: 1817 LDQGN-ESGFVDMYNLSV-CDSRRSLSSDQQLIDLLEDKSLESKLALSQTHSDEEEEEEN 1874
Query: 1361 KEENA--VTGIEE 1371
+EEN TG+ E
Sbjct: 1875 EEENVGVATGLRE 1887
Score = 45 (20.9 bits), Expect = 1.7e-115, Sum P(3) = 1.7e-115
Identities = 22/75 (29%), Positives = 34/75 (45%)
Query: 136 SKRARSKIITIKSQSGVKSSGADKVSQIFGNSILARKRSNKGKSVLALGVKSLEKSLDSS 195
+K A+ K + + KS A K G + + RK+ K KS V+SLE LD
Sbjct: 163 TKEAKEKRSGADTAARTKSKKASKEQ---GPTPVERKKKGKRKSETT--VESLE--LDQG 215
Query: 196 QVDVSCSTKPENTSA 210
+ S + E+T +
Sbjct: 216 LPNSSLRSPEESTES 230
Score = 44 (20.5 bits), Expect = 2.1e-115, Sum P(3) = 2.1e-115
Identities = 13/52 (25%), Positives = 22/52 (42%)
Query: 257 SEQNDEVPVEKHEKSSTNGSSGIKFVLAIGASERDRKRKPEVKDE--DSQKK 306
S++ PVE+ +K + ++ + R PE E DSQK+
Sbjct: 185 SKEQGPTPVERKKKGKRKSETTVESLELDQGLPNSSLRSPEESTESADSQKR 236
Score = 42 (19.8 bits), Expect = 3.5e-115, Sum P(3) = 3.5e-115
Identities = 28/137 (20%), Positives = 52/137 (37%)
Query: 181 LALGVKSLEKSLDSSQVDVSCSTKPENTSAGVPVEGSSSCP---NDDDEKQLNASPTDSL 237
+ + ++ EK L + +V + P + A V + S P + D E+++ + L
Sbjct: 1 MIMKIQKKEKQLSNLKV---LNHSPMS-DASVNFDYKSPSPFEHSTDQEEKIEDVASHCL 56
Query: 238 ADTKFHPAEE----VLPHSQVTKSEQNDE----VPVEKHEKSSTNGSSGIKFVLAIGASE 289
+ + AEE + P + + D V+K K G
Sbjct: 57 SQKDLYAAEEEAETLFPRKMTSHNGMEDSGGGGTGVKKKRKKKDPGEQD-----GAAKGS 111
Query: 290 RDRKRKPEVKDEDSQKK 306
+DR+ KP+ K E + K
Sbjct: 112 KDREPKPKRKREPREPK 128
Score = 37 (18.1 bits), Expect = 1.2e-114, Sum P(3) = 1.2e-114
Identities = 8/25 (32%), Positives = 15/25 (60%)
Query: 286 GASERDRKRKPEVKDEDSQKKLRVD 310
G + +RK+K + K E + + L +D
Sbjct: 189 GPTPVERKKKGKRKSETTVESLELD 213
>UNIPROTKB|F1PTH3 [details] [associations]
symbol:CHD6 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR002464 InterPro:IPR006576
Pfam:PF00176 Pfam:PF00271 Pfam:PF07533 PROSITE:PS00690
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
SMART:SM00717 Pfam:PF00385 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0003682 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR023780 OMA:CKWATME GeneTree:ENSGT00560000077077
EMBL:AAEX03013942 EMBL:AAEX03013943 Ensembl:ENSCAFT00000014716
Uniprot:F1PTH3
Length = 2715
Score = 1126 (401.4 bits), Expect = 1.7e-115, Sum P(3) = 1.7e-115
Identities = 310/901 (34%), Positives = 458/901 (50%)
Query: 474 SSDEECMKNDIGVDRI-QVYRRSVTKE---CKVTKECKGENAIDLLREDDKDSDPVAVNG 529
S +E + G D + + +KE V ++ KG+ + E + D N
Sbjct: 161 SGTKEAKEKRSGADTAARTKSKKASKEQGPTPVERKKKGKRKSETTVES-LELDQGLPNS 219
Query: 530 KVQ--DESAVSTEDLGERNDKMVV-----EDADVSLRDNEGLTVSEIH------ITCEST 576
++ +ES S + R+ + V ED D + D++G T++ + ++ +
Sbjct: 220 SLRSPEESTESADSQKRRSGRQVKRRKYNEDLDFKVVDDDGETIAVLGAGRTSALSASTL 279
Query: 577 DKDVDVGKKTSGSVAKRVQEPAVTESAQVKGKAVSYE-FLVKWVGKSNIHNSWIPESQLK 635
+ + ++ +++ + E F VK+ S +H W +L+
Sbjct: 280 AWQAEEPPEDDANIIEKILASKTVQEVHPGEPPFDLELFYVKYRNFSYLHCKWATMEELE 339
Query: 636 VLAK--RKLENYKAKYGTT--VINICDERWKQPQ-----RVISLRSSKDG-TREA----F 681
+ +K++ ++ K + DE P RV+ + +KD T E
Sbjct: 340 KDPRIAQKIKRFRNKQAQMKHIFTEPDEDLFNPDYVEVDRVLEVAHTKDAETGEEVTHYL 399
Query: 682 VKWTGLPYDECTWEKLDEPALEKYSHLTDLFVQFERQTLKKDASEDELPRGKGDCQQSEI 741
VKW LPY+E TWE ++ K L V E + +++ AS D Q
Sbjct: 400 VKWCSLPYEESTWELEEDVDPAKVKEFESLQVLPEIKHVERPAS---------DSWQK-- 448
Query: 742 VALTEQPEELKGGALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCE 801
L + E L +QLE +NWL W+ KN ILADEMGLGKT+ + F+S ++
Sbjct: 449 --LEKSREYKNSNQLREYQLEGMNWLLFNWYNRKNCILADEMGLGKTIQSITFLSEIFLR 506
Query: 802 FKAKLPCLVLVPLSTMPNWLAEFALWAPNLNVVEYHGCAKARAIIRQYEWHASDPDNLNK 861
P L++ PLST+ NW EF W +N + YHG +R +I+QYE D N
Sbjct: 507 -GIHGPFLIIAPLSTITNWEREFRTWT-EMNAIVYHGSQISRQMIQQYEMVYRDAQG-NP 563
Query: 862 KTSSYKFNVLLTTYEMILADSSHLRGVPWEVLVVDEGHRXXXXXXXXXXXXXXXXXQHRV 921
+ +KF+V++TT+EMILAD L+ + W +++DE HR +H+V
Sbjct: 564 LSGVFKFHVVITTFEMILADCPELKKIHWSCVIIDEAHRLKNRNCKLLEGLKLMALEHKV 623
Query: 922 LLTGTPLQNNIGEMYNLLNFLQPASFPSLSSFEEKFNDLTTTQKVEELKKLVAPHMLRRL 981
LLTGTPLQN++ E+++LLNFL+P+ FPS ++F E+F DL T ++V++L+ ++ P MLRRL
Sbjct: 624 LLTGTPLQNSVEELFSLLNFLEPSQFPSETAFLEEFGDLKTEEQVKKLQSILKPMMLRRL 683
Query: 982 KKDAMQNIPPKTERMVPVELSSIQAEYYRAMLTKNYQILRNIGKGVAQQSMLNIV---MQ 1038
K D +N+ PK E ++ VEL++IQ +YYRA+L KN+ L KG Q +M N++ M+
Sbjct: 684 KDDVEKNLAPKQETIIEVELTNIQKKYYRAILEKNFSFLT---KGANQHNMPNLINTMME 740
Query: 1039 LRKVCNHPYLIPGTE------------PDSGSVEFLHEMRIKASAKLTLLHSMLKVLYKE 1086
LRK CNHPYLI G E PD+ +F + I+A+ KL L+ +L L
Sbjct: 741 LRKCCNHPYLINGAEEKILEDFRKTHSPDAP--DFQLQAMIQAAGKLVLIDKLLPKLIAG 798
Query: 1087 GHRVLIFSQMTKLLDILEDYLNIEFGPKTYERVDGSVSVGDRQAAITRF-NQDKSRFVFL 1145
GH+VLIFSQM + LDILEDYL I+ TYER+DG V RQAAI RF D RFVFL
Sbjct: 799 GHKVLIFSQMVRCLDILEDYL-IQ-RRYTYERIDGRVRGNLRQAAIDRFCKPDSDRFVFL 856
Query: 1146 LSTRSCGLGINLATADTVIIYDSDFNPHADIQAMNRAHRIGQSKRLLVYRLVVRASVEER 1205
L TR+ GLGINL ADT II+DSD+NP D+QA R HRIGQSK + VYRL+ R S E
Sbjct: 857 LCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVKVYRLITRNSYERE 916
Query: 1206 ILQLAKKKLMLDQLF---VNKSGSQKEVEDILRWGTEELFNDSPGINGKDMGENNTSIEE 1262
+ A KL LD+ +N+ GS V+ + + E+L G G M E + +
Sbjct: 917 MFDKASLKLGLDKAVLQDINRKGSTNGVQQLSKMEVEDLLRK--GAYGALMDEEDEGSKF 974
Query: 1263 AVRDLEQKHRKRGGGLGDVYQDK-CTEGSTKIVWDENAIARLLDRSNLQSGSTDLAEGDL 1321
D++Q ++R + + K T V N LD N +AE D
Sbjct: 975 CEEDIDQILQRRTHTITIQSEGKGSTFAKASFVASGNRTDISLDDPNFWQKWAKIAELDT 1034
Query: 1322 E 1322
E
Sbjct: 1035 E 1035
Score = 46 (21.3 bits), Expect = 1.7e-115, Sum P(3) = 1.7e-115
Identities = 22/73 (30%), Positives = 35/73 (47%)
Query: 1304 LDRSNLQSGSTDLAEGDLENDMLGSVKATEWNEETTEDQA-ESPVAAVDDAS--AENSER 1360
LD+ N +SG D+ + D S+ + + + ED++ ES +A S E E
Sbjct: 1817 LDQGN-ESGFVDMYNLSV-CDSRRSLSSDQQLIDLLEDKSLESKLALSQTHSDEEEEEEN 1874
Query: 1361 KEENA--VTGIEE 1371
+EEN TG+ E
Sbjct: 1875 EEENVGVATGLRE 1887
Score = 45 (20.9 bits), Expect = 1.7e-115, Sum P(3) = 1.7e-115
Identities = 22/75 (29%), Positives = 34/75 (45%)
Query: 136 SKRARSKIITIKSQSGVKSSGADKVSQIFGNSILARKRSNKGKSVLALGVKSLEKSLDSS 195
+K A+ K + + KS A K G + + RK+ K KS V+SLE LD
Sbjct: 163 TKEAKEKRSGADTAARTKSKKASKEQ---GPTPVERKKKGKRKSETT--VESLE--LDQG 215
Query: 196 QVDVSCSTKPENTSA 210
+ S + E+T +
Sbjct: 216 LPNSSLRSPEESTES 230
Score = 44 (20.5 bits), Expect = 2.1e-115, Sum P(3) = 2.1e-115
Identities = 13/52 (25%), Positives = 22/52 (42%)
Query: 257 SEQNDEVPVEKHEKSSTNGSSGIKFVLAIGASERDRKRKPEVKDE--DSQKK 306
S++ PVE+ +K + ++ + R PE E DSQK+
Sbjct: 185 SKEQGPTPVERKKKGKRKSETTVESLELDQGLPNSSLRSPEESTESADSQKR 236
Score = 40 (19.1 bits), Expect = 5.6e-115, Sum P(3) = 5.6e-115
Identities = 23/110 (20%), Positives = 40/110 (36%)
Query: 208 TSAGVPVEGSSSCP---NDDDEKQLNASPTDSLADTKFHPAEE----VLPHSQVTKSEQN 260
+ A V + S P + D E+++ + L+ + AEE + P + +
Sbjct: 24 SDASVNFDYKSPSPFEHSTDQEEKIEDVASHCLSQKDLYAAEEEAETLFPRKMTSHNGME 83
Query: 261 DE----VPVEKHEKSSTNGSSGIKFVLAIGASERDRKRKPEVKDEDSQKK 306
D V+K K G +DR+ KP+ K E + K
Sbjct: 84 DSGGGGTGVKKKRKKKDPGEQD-----GAAKGSKDREPKPKRKREPREPK 128
Score = 37 (18.1 bits), Expect = 1.2e-114, Sum P(3) = 1.2e-114
Identities = 8/25 (32%), Positives = 15/25 (60%)
Query: 286 GASERDRKRKPEVKDEDSQKKLRVD 310
G + +RK+K + K E + + L +D
Sbjct: 189 GPTPVERKKKGKRKSETTVESLELD 213
>ASPGD|ASPL0000052010 [details] [associations]
symbol:AN1255 species:162425 "Emericella nidulans"
[GO:0004003 "ATP-dependent DNA helicase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0031934 "mating-type region
heterochromatin" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0000070
"mitotic sister chromatid segregation" evidence=IEA] [GO:0030466
"chromatin silencing at silent mating-type cassette" evidence=IEA]
[GO:0060303 "regulation of nucleosome density" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 EMBL:BN001308 GO:GO:0003677 EMBL:AACD01000017
GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
InterPro:IPR023779 PROSITE:PS00598 InterPro:IPR025260 Pfam:PF13907
KO:K11367 HOGENOM:HOG000207917 OrthoDB:EOG4TF3TB RefSeq:XP_658859.1
ProteinModelPortal:Q5BDX5 STRING:Q5BDX5
EnsemblFungi:CADANIAT00001368 GeneID:2877029 KEGG:ani:AN1255.2
OMA:GPRRMAI Uniprot:Q5BDX5
Length = 1517
Score = 1111 (396.2 bits), Expect = 2.0e-115, Sum P(2) = 2.0e-115
Identities = 265/651 (40%), Positives = 374/651 (57%)
Query: 612 YEFLVKWVGKSNIHNSW-IPESQLKVLAKRKLENYKAK---------YGTTVINICDERW 661
+EF +KW KS+ H +W ES + R+L+NY K Y V E+W
Sbjct: 286 FEFYIKWQEKSHYHATWETTESLANCRSTRRLDNYVRKVLAEDLRLNYDEGVPPEDREKW 345
Query: 662 --------------KQPQRVISLRSSKDGTREAFVKWTGLPYDECTWEKLDEPALEKYSH 707
K +RVI++R +DGT E VKW L YD CTWE +E
Sbjct: 346 NLDRERDVDAIEDHKIVERVIAMREGEDGT-EYLVKWKRLFYDSCTWES-EELISNIAQR 403
Query: 708 LTDLFVQFERQTLKKDASEDELPRGKGDCQQSEIVALTEQPEELKGGALFPHQLEALNWL 767
D F+ + D E P + + E + T P L G L Q++ +N++
Sbjct: 404 EIDRFLDRSSRPPVSDKKESH-PSSR---KPFEPIKGT--PSFLHNGQLKEFQVKGVNFM 457
Query: 768 RKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLSTMPNWLAEFALW 827
W K++NV+LADEMGLGKTV AFIS L + + P +V+VPLSTMP+W F W
Sbjct: 458 AFNWVKNRNVVLADEMGLGKTVQTVAFISWLRHVRRQQGPFVVVVPLSTMPSWAETFDNW 517
Query: 828 APNLNVVEYHGCAKARAIIRQYEWHASDPDNLNKKTSSYKFNVLLTTYEMILADSSHLRG 887
+P+LN V Y+G +R ++++YE N + KFNVLLTTYE +L DSS L
Sbjct: 518 SPDLNYVVYNGNEASRNVLKEYELMVDG----NPRRP--KFNVLLTTYEYVLVDSSFLSQ 571
Query: 888 VPWEVLVVDEGHRXXXXXXXXXXXXXXXXXQHRVLLTGTPLQNNIGEMYNLLNFLQPASF 947
W+ + VDE HR R+L+TGTP+QNN+ E+ LL+FL P
Sbjct: 572 FNWQFMAVDEAHRLKNRDSQLYIKLQEFNSPARLLITGTPIQNNLAELSALLDFLNPG-L 630
Query: 948 PSLSSFEEKFNDLTTTQKVEELKKLVAPHMLRRLKKDAMQNIPPKTERMVPVELSSIQAE 1007
++ + + N ++K+ EL K ++P MLRR K ++PPKTE+++ VELS +Q E
Sbjct: 631 VNVDA-DMDLNSEAASEKLAELTKAISPFMLRRTKTKVESDLPPKTEKIIRVELSDVQLE 689
Query: 1008 YYRAMLTKNYQILRNIGKGVAQQSMLNIVMQLRKVCNHPYLIPGTEPD--SGSVEFLHEM 1065
YY+ +LTKNY L KG +QS+LNI+M+L+K NHP++ P E GS +
Sbjct: 690 YYKNILTKNYAALNEGTKG-QKQSLLNIMMELKKASNHPFMFPSAETKILEGSTRREDVL 748
Query: 1066 R--IKASAKLTLLHSMLKVLYKEGHRVLIFSQMTKLLDILEDYLNIEFGPKTYERVDGSV 1123
R I +S K+ LL +L L ++GHRVLIFSQM K+LDIL DY+ E+ TY+R+DG++
Sbjct: 749 RALITSSGKMMLLDQLLAKLKRDGHRVLIFSQMVKMLDILGDYM--EYRGYTYQRLDGTI 806
Query: 1124 SVGDRQAAITRFNQ-DKSRFVFLLSTRSCGLGINLATADTVIIYDSDFNPHADIQAMNRA 1182
R+ AI +N D S F F+LSTR+ GLGINL TADTVI++DSD+NP AD+QAM RA
Sbjct: 807 PSASRRLAIEHYNAPDSSDFAFILSTRAGGLGINLMTADTVILFDSDWNPQADLQAMARA 866
Query: 1183 HRIGQSKRLLVYRLVVRASVEERILQLAKKKLMLDQLFVNKSGSQKEVEDI 1233
HRIGQ+K + VYRLV + +VEE +++ A+ KL+L+ + + + + KE +I
Sbjct: 867 HRIGQTKPVSVYRLVSKDTVEEEVIERARNKLLLEFITIQRGVTDKEASEI 917
Score = 47 (21.6 bits), Expect = 2.0e-115, Sum P(2) = 2.0e-115
Identities = 18/60 (30%), Positives = 24/60 (40%)
Query: 221 PNDD--DEKQLNASPTDSLADTKFHPAEEVLPHSQVTKSEQNDEVPVEKHEKS--STNGS 276
P DD E NA P D +T AE S S + PV ++ S +T G+
Sbjct: 47 PEDDAVSESSDNADPADDSYNTDSPDAEGEDDESGTENSAKASSPPVAENSSSPQTTRGT 106
>UNIPROTKB|H3BTW3 [details] [associations]
symbol:CHD9 "Chromodomain-helicase-DNA-binding protein 9"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
InterPro:IPR017956 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013
PROSITE:PS51194 SMART:SM00298 SMART:SM00384 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780 EMBL:AC007906
EMBL:AC079416 HGNC:HGNC:25701 Ensembl:ENST00000565803 Bgee:H3BTW3
Uniprot:H3BTW3
Length = 1099
Score = 1081 (385.6 bits), Expect = 2.8e-115, Sum P(3) = 2.8e-115
Identities = 304/884 (34%), Positives = 448/884 (50%)
Query: 519 DKDSDPVAVNGKVQDESAVSTEDL-GERNDKMVVEDADVSLRDNEGLTVSE--IHITCES 575
D+DS N +++ + ED+ G+++++ V + ++ N E + + E+
Sbjct: 154 DQDSQKRRSNRQIKRKKYA--EDIEGKQSEEEV--KGSMKIKKNSAPLPGEQPLQLFVEN 209
Query: 576 -TDKDVD-VGKKTSGSVAKRVQEPAVTESAQVKGKAVSYEFLVKWVGKSNIHNSWIPESQ 633
+++D V K S K+ P V + EF VK+ S +H W E Q
Sbjct: 210 PSEEDAAIVDKILSSRTVKKEISPGVMIDTE--------EFFVKYKNYSYLHCEWATEEQ 261
Query: 634 LKVLAKR---KLENYKAKYGTTVINICDER-------WKQPQRVISLRSSKD-GTREA-- 680
L + KR K++ +K + D + + RV+ + +D T E
Sbjct: 262 L-LKDKRIQQKIKRFKLRQAQRAHFFADMEEEPFNPDYVEVDRVLEVSFCEDKDTGEPVI 320
Query: 681 --FVKWTGLPYDECTWEKLDEPALEKYSHLTDLFVQFERQTLKKDASEDELPRGKGDCQQ 738
VKW LPY++ TWE ++ L K L Q + D + P
Sbjct: 321 YYLVKWCSLPYEDSTWELKEDVDLAKIEEFEQL------QASRPDTRRLDRP-------P 367
Query: 739 SEIVALTEQPEELKGG-ALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISS 797
S I +Q + K G L +QLE LNWL W+ +N ILADEMGLGKT+ + F+
Sbjct: 368 SNIWKKIDQSRDYKNGNQLREYQLEGLNWLLFNWYNRRNCILADEMGLGKTIQSITFLYE 427
Query: 798 LYCEFKAKLPCLVLVPLSTMPNWLAEFALWAPNLNVVEYHGCAKARAIIRQYEWHASDPD 857
+ + P L++ PLST+ NW EF W ++NVV YHG +R +I+QYE + D
Sbjct: 428 ILLT-GIRGPFLIIAPLSTIANWEREFRTWT-DINVVVYHGSLISRQMIQQYEMYFRDSQ 485
Query: 858 NLNKKTSSYKFNVLLTTYEMILADSSHLRGVPWEVLVVDEGHRXXXXXXXXXXXXXXXXX 917
+ +Y+F ++TT+EMIL L + W +++DE HR
Sbjct: 486 GRIIR-GAYRFQAIITTFEMILGGCGELNAIEWRCVIIDEAHRLKNKNCKLLEGLKLMNL 544
Query: 918 QHRVLLTGTPLQNNIGEMYNLLNFLQPASFPSLSSFEEKFNDLTTTQKVEELKKLVAPHM 977
+H+VLLTGTPLQN + E+++LL+FL+P FPS S+F ++F DL T ++V++L+ ++ P M
Sbjct: 545 EHKVLLTGTPLQNTVEELFSLLHFLEPLRFPSESTFMQEFGDLKTEEQVQKLQAILKPMM 604
Query: 978 LRRLKKDAMQNIPPKTERMVPVELSSIQAEYYRAMLTKNYQILRNIGKGVAQQSMLNIV- 1036
LRRLK+D + + PK E ++ VEL++IQ +YYRA+L KN+ L KG Q ++ N+V
Sbjct: 605 LRRLKEDVEKKLAPKEETIIEVELTNIQKKYYRAILEKNFSFL---SKGAGQTNVPNLVN 661
Query: 1037 --MQLRKVCNHPYLIPGTEP-------DS---GSVEFLHEMRIKASAKLTLLHSMLKVLY 1084
M+LRK CNHPYLI G E D+ + +F + I+++ KL L+ +L +
Sbjct: 662 TMMELRKCCNHPYLIKGAEEKILGEFRDTYNPAASDFHLQAMIQSAGKLVLIDKLLPKMK 721
Query: 1085 KEGHRVLIFSQMTKLLDILEDYLNIEFGPKTYERVDGSVSVGDRQAAITRFNQ-DKSRFV 1143
GH+VLIFSQM + LDILEDYL + YER+DG V RQAAI RF++ D RFV
Sbjct: 722 AGGHKVLIFSQMVRCLDILEDYLIHK--RYLYERIDGRVRGNLRQAAIDRFSKPDSDRFV 779
Query: 1144 FLLSTRSCGLGINLATADTVIIYDSDFNPHADIQAMNRAHRIGQSKRLLVYRLVVRASVE 1203
FLL TR+ GLGINL ADT II+DSD+NP D+QA R HRIGQ+K + VYRLV R S E
Sbjct: 780 FLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQNKAVKVYRLVTRNSYE 839
Query: 1204 ERILQLAKKKLMLDQLFVNK-SGSQKEVEDILRWGTEELFND--SPGINGKDMGENNTSI 1260
+ A KL LD+ + SG + V I + +E+ D G G M E +
Sbjct: 840 REMFDRASLKLGLDKAVLQSMSGRESNVGGIQQLSKKEI-EDLLRRGAYGAIMEEEDEGS 898
Query: 1261 EEAVRDLEQKHRKRGGGLGDVYQDK-CTEGSTKIVWDENAIARLLDRSNLQSGSTDLAEG 1319
+ D++Q +R + + + T V N LD N AE
Sbjct: 899 KFCEEDIDQILLRRTKTITIESEGRGSTFAKASFVASGNRTDISLDDPNFWQKWAKKAEI 958
Query: 1320 DLENDMLGSVKATEWNEETTEDQAESPVAAVDDASAENSERKEE 1363
D+E + + + Q P +A D AE SE + E
Sbjct: 959 DIE--AISGRNSLVIDTPRIRKQTR-PFSATKDELAELSEAESE 999
Score = 50 (22.7 bits), Expect = 2.8e-115, Sum P(3) = 2.8e-115
Identities = 13/37 (35%), Positives = 16/37 (43%)
Query: 36 EENLVTSESPRNTPSAKRRLKNEINADRSSTKKKGND 72
E N+ SP N P+A K E R +K K D
Sbjct: 68 ERNIPRVMSPENFPTASVEGKEEKKGRRMKSKPKDKD 104
Score = 40 (19.1 bits), Expect = 2.8e-115, Sum P(3) = 2.8e-115
Identities = 8/18 (44%), Positives = 14/18 (77%)
Query: 291 DRKRKPE--VKDEDSQKK 306
D ++ P+ +KD+DSQK+
Sbjct: 143 DAEQMPQHTLKDQDSQKR 160
Score = 39 (18.8 bits), Expect = 2.1e-111, Sum P(2) = 2.1e-111
Identities = 7/17 (41%), Positives = 13/17 (76%)
Query: 289 ERDRKRKPEVKDEDSQK 305
++ R+ K + KD+DS+K
Sbjct: 91 KKGRRMKSKPKDKDSKK 107
>CGD|CAL0001390 [details] [associations]
symbol:orf19.3035 species:5476 "Candida albicans" [GO:0000124
"SAGA complex" evidence=IEA] [GO:0031934 "mating-type region
heterochromatin" evidence=IEA] [GO:0046695 "SLIK (SAGA-like)
complex" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
[GO:0030874 "nucleolar chromatin" evidence=IEA] [GO:2000616
"negative regulation of histone H3-K9 acetylation" evidence=IEA]
[GO:0034401 "regulation of transcription by chromatin organization"
evidence=IEA] [GO:0071441 "negative regulation of histone H3-K14
acetylation" evidence=IEA] [GO:0006369 "termination of RNA
polymerase II transcription" evidence=IEA] [GO:0016584 "nucleosome
positioning" evidence=IEA] [GO:0006368 "transcription elongation
from RNA polymerase II promoter" evidence=IEA] [GO:0000070 "mitotic
sister chromatid segregation" evidence=IEA] [GO:0060303 "regulation
of nucleosome density" evidence=IEA] [GO:0006200 "ATP catabolic
process" evidence=IEA] [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=IEA] [GO:2000104 "negative regulation of
DNA-dependent DNA replication" evidence=IEA] [GO:0042766
"nucleosome mobilization" evidence=IEA] [GO:0001178 "regulation of
transcriptional start site selection at RNA polymerase II promoter"
evidence=IEA] [GO:0006363 "termination of RNA polymerase I
transcription" evidence=IEA] [GO:0030466 "chromatin silencing at
silent mating-type cassette" evidence=IEA] [GO:0000182 "rDNA
binding" evidence=IEA] [GO:0031490 "chromatin DNA binding"
evidence=IEA] [GO:0035064 "methylated histone residue binding"
evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=IEA] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013
PROSITE:PS51194 SMART:SM00298 SMART:SM00490 CGD:CAL0001390
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 EMBL:AACQ01000017
EMBL:AACQ01000015 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR023780 InterPro:IPR023779
PROSITE:PS00598 InterPro:IPR025260 Pfam:PF13907 KO:K11367
RefSeq:XP_721262.1 RefSeq:XP_721533.1 ProteinModelPortal:Q5AI17
STRING:Q5AI17 GeneID:3636889 GeneID:3637077 KEGG:cal:CaO19.10553
KEGG:cal:CaO19.3035 Uniprot:Q5AI17
Length = 1410
Score = 1114 (397.2 bits), Expect = 3.3e-115, Sum P(2) = 3.3e-115
Identities = 275/658 (41%), Positives = 381/658 (57%)
Query: 601 ESAQVKGKA-VSYEFLVKWVGKSNIHNSWIPESQLKVLAK-RKLENYKAKYG-------- 650
E+A+ G + Y F +KW S++HN+W LK RKL+NY ++
Sbjct: 184 ENAEKTGDPKIDYLFKIKWTDASHLHNTWEKYQDLKSFKGFRKLDNYIKQFIIYDDEIRN 243
Query: 651 ---TT-----VINICDERWKQPQ-------RVI-SLR-SSKDG-TR-EAFVKWTGLPYDE 691
TT ++I ER + Q R++ S R + DG T+ + FVKW L YDE
Sbjct: 244 DPLTTKEDLEAMDIERERKRDEQDEYTHVERIVDSERVETDDGETKLQYFVKWKRLYYDE 303
Query: 692 CTWEKLDEPALEKYSHLTDLFVQFERQTLKKDASEDELPRGKGDCQQSEIVALTEQPEEL 751
C+WE +E A +T + + L ++ L Q+ L +QP +
Sbjct: 304 CSWEDAEEIAKIAPEQVTKYQQRLNSKILPSLSANYPLS------QRPRFEKLFKQPVFI 357
Query: 752 KGGALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVL 811
K G L QL LNW+ W +++N ILADEMGLGKTV AF+S L + P LV+
Sbjct: 358 KNGELRDFQLTGLNWMAFLWSRNENGILADEMGLGKTVQTVAFLSWLIYARRQNGPHLVV 417
Query: 812 VPLSTMPNWLAEFALWAPNLNVVEYHGCAKARAIIRQYEWHASDPDNLNKKTSSYKFNVL 871
VPLST+P W F WAP++N V Y G +AR IR+YE + N N+K KFNVL
Sbjct: 418 VPLSTVPAWQETFEKWAPDVNCVYYLGNGEARKTIREYELY-----NQNRKP---KFNVL 469
Query: 872 LTTYEMILADSSHLRGVPWEVLVVDEGHRXXXXXXXXXXXXXXXXXQHRVLLTGTPLQNN 931
LTTYE IL D + L W+ L VDE HR +R+L+TGTPLQNN
Sbjct: 470 LTTYEYILKDKNELGAFKWQFLAVDEAHRLKNAESSLYEALKGFKVSNRLLITGTPLQNN 529
Query: 932 IGEMYNLLNFLQPASFPSLSSFEEKFNDLTTTQKVEELKKLVAPHMLRRLKKDAMQNIPP 991
+ E+ L NFL P F + + D Q +++L+K ++P +LRRLKKD +++P
Sbjct: 530 VKELAALCNFLMPGKFTIDQEIDFETIDSEQEQYIKDLQKKISPFILRRLKKDVEKSLPS 589
Query: 992 KTERMVPVELSSIQAEYYRAMLTKNYQILRNIGKGVAQQSMLNIVMQLRKVCNHPYLIPG 1051
K+ER++ VELS IQ EYY+ ++TKNY L N G +Q S+LNI+ +L+K NHPYL G
Sbjct: 590 KSERILRVELSDIQTEYYKNIITKNYAAL-NAGNRGSQISLLNIMSELKKASNHPYLFDG 648
Query: 1052 TEPD----SGSVEFLHEMR--IKASAKLTLLHSMLKVLYKEGHRVLIFSQMTKLLDILED 1105
E +GS + ++ + +S K+ LL +L L KEGHRVLIFSQM ++LDIL D
Sbjct: 649 AEDKVLDKAGSPSRENTLKGIVMSSGKMVLLEQLLSRLRKEGHRVLIFSQMVRMLDILGD 708
Query: 1106 YLNIEFGPKTYERVDGSVSVGDRQAAITRFNQDKSR-FVFLLSTRSCGLGINLATADTVI 1164
Y+ I+ G + ++R+DG+V R+ AI FN S+ F FLLSTR+ GLGINL TADTVI
Sbjct: 709 YMFIK-GYQ-FQRLDGTVPSSKRKIAIDHFNAPGSKDFAFLLSTRAGGLGINLMTADTVI 766
Query: 1165 IYDSDFNPHADIQAMNRAHRIGQSKRLLVYRLVVRASVEERILQLAKKKLMLDQLFVN 1222
I+DSD+NP AD+QAM RAHRIGQ + VYR V + +VEE+IL+ A+KK++L+ ++
Sbjct: 767 IFDSDWNPQADLQAMARAHRIGQKNHVSVYRFVSKDTVEEQILERARKKMVLEYAIIS 824
Score = 42 (19.8 bits), Expect = 3.3e-115, Sum P(2) = 3.3e-115
Identities = 14/43 (32%), Positives = 21/43 (48%)
Query: 517 EDDKDSD--PVAVNGKVQD--ESAVSTEDLGERNDKMVVEDAD 555
E D + D P KVQD E +S ++ + ND+ +D D
Sbjct: 33 ESDSEEDVAPSRKKKKVQDDYEDGISMDE--DENDEFGDDDDD 73
>POMBASE|SPAC3G6.01 [details] [associations]
symbol:hrp3 "ATP-dependent DNA helicase Hrp3"
species:4896 "Schizosaccharomyces pombe" [GO:0000070 "mitotic
sister chromatid segregation" evidence=IMP] [GO:0000790 "nuclear
chromatin" evidence=NAS] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004003 "ATP-dependent DNA helicase activity" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005524 "ATP
binding" evidence=IC] [GO:0005634 "nucleus" evidence=IDA]
[GO:0006338 "chromatin remodeling" evidence=NAS] [GO:0008094
"DNA-dependent ATPase activity" evidence=ISM] [GO:0030466
"chromatin silencing at silent mating-type cassette" evidence=IMP]
[GO:0031934 "mating-type region heterochromatin" evidence=IDA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEP] [GO:0060303 "regulation of
nucleosome density" evidence=IMP] [GO:0030702 "chromatin silencing
at centromere" evidence=IMP] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
PomBase:SPAC3G6.01 Pfam:PF00385 GO:GO:0005524 EMBL:CU329670
GenomeReviews:CU329670_GR GO:GO:0003677 GO:GO:0045944 GO:GO:0006351
GO:GO:0006338 GO:GO:0030466 GO:GO:0000790 GO:GO:0000070
GO:GO:0004003 GO:GO:0031934 InterPro:IPR016197 SUPFAM:SSF54160
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 KO:K11367 HOGENOM:HOG000207917
OrthoDB:EOG4TF3TB GO:GO:0060303 PIR:T38720 RefSeq:NP_594967.1
ProteinModelPortal:O14139 MINT:MINT-4670837 STRING:O14139
EnsemblFungi:SPAC3G6.01.1 GeneID:2543064 KEGG:spo:SPAC3G6.01
OMA:HINGSST NextBio:20804092 Uniprot:O14139
Length = 1388
Score = 1102 (393.0 bits), Expect = 6.9e-115, Sum P(2) = 6.9e-115
Identities = 254/651 (39%), Positives = 376/651 (57%)
Query: 612 YEFLVKWVGKSNIHNSWIPESQLKVL-AKRKLENYKAKY----------GTTV---INIC 657
YEFL+KWV S++H +W P + + ++ +K++N+ + TT I
Sbjct: 214 YEFLIKWVNFSHLHCTWEPYNNISMIRGSKKVDNHIKQVILLDREIREDPTTTREDIEAM 273
Query: 658 D----------ERWKQPQRVISLRSSKDGTREAFVKWTGLPYDECTWEKLDEPALEKYSH 707
D E +KQ R+++ + DG+ E VKW L YD CTWE +E +
Sbjct: 274 DIEKERKRENYEEYKQVDRIVAKHLNSDGSVEYLVKWKQLLYDFCTWEA--SSIIEPIA- 330
Query: 708 LTDLFVQFERQTLKKDASEDELPRGKGDCQQSEIVALTEQPEELKGGALFPHQLEALNWL 767
T++ ER+ + A G+ + + L +QP + GG L QL +NW+
Sbjct: 331 ATEIQAFQERE---ESALSPSRGTNYGN-SRPKYRKLEQQPSYITGGELRDFQLTGVNWM 386
Query: 768 RKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLSTMPNWLAEFALW 827
WHK++N ILADEMGLGKTV AF+S L + P LV+VPLST+P W ALW
Sbjct: 387 AYLWHKNENGILADEMGLGKTVQTVAFLSYLAHSLRQHGPFLVVVPLSTVPAWQETLALW 446
Query: 828 APNLNVVEYHGCAKARAIIRQYEWHASDPDNLNKKTSSYKFNVLLTTYEMILADSSHLRG 887
A ++N + Y G +R +IR YE++ T KFN+LLTTYE +L D S L
Sbjct: 447 ASDMNCISYLGNTTSRQVIRDYEFYVDG-------TQKIKFNLLLTTYEYVLKDRSVLSN 499
Query: 888 VPWEVLVVDEGHRXXXXXXXXXXXXXXXXXQHRVLLTGTPLQNNIGEMYNLLNFLQPASF 947
+ W+ + +DE HR +R+L+TGTPLQNNI E+ L++FL P F
Sbjct: 500 IKWQYMAIDEAHRLKNSESSLYEALSQFKNSNRLLITGTPLQNNIRELAALVDFLMPGKF 559
Query: 948 PSLSSFEEKFNDLTTTQKVEELKKLVAPHMLRRLKKDAMQNIPPKTERMVPVELSSIQAE 1007
+ D + L++ + P++LRRLKKD +++P K+ER++ VELS +Q
Sbjct: 560 EIREEINLEAPDEEQEAYIRSLQEHLQPYILRRLKKDVEKSLPSKSERILRVELSDLQMY 619
Query: 1008 YYRAMLTKNYQIL-RNIGKGVAQQSMLNIVMQLRKVCNHPYLIPGTEPD-------SGSV 1059
+Y+ +LT+NY++L ++I G +Q S+LNIV++L+K NHPYL G E G
Sbjct: 620 WYKNILTRNYRVLTQSISSG-SQISLLNIVVELKKASNHPYLFDGVEESWMQKINSQGRR 678
Query: 1060 EFLHEMRIKASAKLTLLHSMLKVLYKEGHRVLIFSQMTKLLDILEDYLNIEFGPKTYERV 1119
+ + + I S K+ LL +L L ++GHRVLIFSQM ++LDIL DYL++ P ++R+
Sbjct: 679 DEVLKGLIMNSGKMVLLDKLLSRLRRDGHRVLIFSQMVRMLDILGDYLSLRGYP--HQRL 736
Query: 1120 DGSVSVGDRQAAITRFNQDKSR-FVFLLSTRSCGLGINLATADTVIIYDSDFNPHADIQA 1178
DG+V R+ +I FN S FVFLLSTR+ GLGINL TADTVII+DSD+NP AD+QA
Sbjct: 737 DGTVPAAVRRTSIDHFNAPNSPDFVFLLSTRAGGLGINLMTADTVIIFDSDWNPQADLQA 796
Query: 1179 MNRAHRIGQSKRLLVYRLVVRASVEERILQLAKKKLMLDQLFVNKSGSQKE 1229
M RAHRIGQ ++VYRL+ + ++EE +L+ A++K++L+ ++ + K+
Sbjct: 797 MARAHRIGQKNHVMVYRLLSKDTIEEDVLERARRKMILEYAIISLGVTDKQ 847
Score = 51 (23.0 bits), Expect = 6.9e-115, Sum P(2) = 6.9e-115
Identities = 12/28 (42%), Positives = 14/28 (50%)
Query: 250 PHSQVTKSEQNDEVPVEKHEKSSTNGSS 277
P V +Q D P KH K + NGSS
Sbjct: 71 PGRYVDTDDQEDVFP-SKHRKGTRNGSS 97
>RGD|1594200 [details] [associations]
symbol:LOC680231 "similar to chromodomain helicase DNA binding
protein 9" species:10116 "Rattus norvegicus" [GO:0003677 "DNA
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271
Pfam:PF07533 PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298
SMART:SM00490 SMART:SM00592 Pfam:PF00385 RGD:1594200 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 OrthoDB:EOG4548XQ IPI:IPI00957597
Ensembl:ENSRNOT00000018201 Uniprot:D3ZVE2
Length = 2881
Score = 1095 (390.5 bits), Expect = 5.0e-114, Sum P(3) = 5.0e-114
Identities = 288/786 (36%), Positives = 411/786 (52%)
Query: 613 EFLVKWVGKSNIHNSWIPESQLKVLAKR---KLENYKAKYGTTVINICDER-------WK 662
EF VK+ S +H W E QL + KR K++ +K + + D +
Sbjct: 714 EFFVKYKNYSYLHCEWATEQQL-LKDKRIQQKIKRFKLRQAQRAHFLADMEEEPFNPDYV 772
Query: 663 QPQRVISLRSSKD-GTREA----FVKWTGLPYDECTWEKLDEPALEKYSHLTDLFVQFER 717
+ R++ + +D T E+ VKW LPY++ TWE ++ L K L
Sbjct: 773 EVDRILEVSFCEDKDTGESVVYYLVKWCSLPYEDSTWELKEDVDLAKIEEFEQL------ 826
Query: 718 QTLKKDASEDELPRGKGDCQQSEIVALTEQPEELKGG-ALFPHQLEALNWLRKCWHKSKN 776
Q + D + + P S I +Q E K G L +QLE LNWL W+ +N
Sbjct: 827 QASRPDTRQLDRP-------PSNIWKKIDQSREYKNGNQLREYQLEGLNWLLFNWYNRRN 879
Query: 777 VILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLSTMPNWLAEFALWAPNLNVVEY 836
ILADEMGLGKT+ + F+ + + P L++ PLST+ NW EF W ++NVV Y
Sbjct: 880 CILADEMGLGKTIQSITFLYEVLLT-GIRGPFLIIAPLSTIANWEREFRTWT-DINVVVY 937
Query: 837 HGCAKARAIIRQYEWHASDPDNLNKKTSSYKFNVLLTTYEMILADSSHLRGVPWEVLVVD 896
HG +R +I+QYE + D + +Y+F ++TT+EMIL L + W +++D
Sbjct: 938 HGSLISRQMIQQYEMYFRDSQGRIIR-GAYRFQAIITTFEMILGGCGELNAIEWRCVIID 996
Query: 897 EGHRXXXXXXXXXXXXXXXXXQHRVLLTGTPLQNNIGEMYNLLNFLQPASFPSLSSFEEK 956
E HR +H+VLLTGTPLQN + E+++LL+FL+P FPS S+F ++
Sbjct: 997 EAHRLKNKNCKLLEGLKLMNLEHKVLLTGTPLQNTVEELFSLLHFLEPLRFPSESTFMQE 1056
Query: 957 FNDLTTTQKVEELKKLVAPHMLRRLKKDAMQNIPPKTERMVPVELSSIQAEYYRAMLTKN 1016
F DL T ++V++L+ ++ P MLRRLK+D + + PK E ++ VEL++IQ +YYRA+L KN
Sbjct: 1057 FGDLKTEEQVQKLQAILKPMMLRRLKEDVEKRLAPKEETIIEVELTNIQKKYYRAILEKN 1116
Query: 1017 YQILRNIGKGVAQQSMLNIV---MQLRKVCNHPYLIPGTEP-------DS---GSVEFLH 1063
+ L KG Q ++ N+V M+LRK CNHPYLI G E D+ + +F
Sbjct: 1117 FSFL---SKGAGQTNVPNLVNTMMELRKCCNHPYLIKGAEEKIIGEFRDTYNPSASDFHL 1173
Query: 1064 EMRIKASAKLTLLHSMLKVLYKEGHRVLIFSQMTKLLDILEDYLNIEFGPKTYERVDGSV 1123
+ I+++ KL L+ +L + GH+VLIFSQM + LDILEDYL + YER+DG V
Sbjct: 1174 QAMIQSAGKLVLIDKLLPKMKAGGHKVLIFSQMVRCLDILEDYLIHK--RYLYERIDGRV 1231
Query: 1124 SVGDRQAAITRFNQ-DKSRFVFLLSTRSCGLGINLATADTVIIYDSDFNPHADIQAMNRA 1182
RQAAI RF++ D RFVFLL TR+ GLGINL ADT II+DSD+NP D+QA R
Sbjct: 1232 RGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARC 1291
Query: 1183 HRIGQSKRLLVYRLVVRASVEERILQLAKKKLMLDQLFVNK-SGSQKEVEDILRWGTEEL 1241
HRIGQ+K + VYRLV R S E + A KL LD+ + SG V I + +E+
Sbjct: 1292 HRIGQNKAVKVYRLVTRNSYEREMFDRASLKLGLDKAVLQSMSGRDSNVSGIQQLSKKEI 1351
Query: 1242 FND--SPGINGKDMGENNTSIEEAVRDLEQKHRKRGGGLGDVYQDKC--TEGSTKIVWDE 1297
D G G M E + + D++Q +R + + + C T V
Sbjct: 1352 -EDLLRRGAYGAIMEEEDEGSKFCEEDIDQILLRRTKTI-TIESEGCGSTFAKASFVASG 1409
Query: 1298 NAIARLLDRSNLQSGSTDLAEGDLENDMLGSVKATEWNEETTEDQAESPVAAVDDASAEN 1357
N LD N AE DL D + + + Q P +A D AE
Sbjct: 1410 NRTDISLDDPNFWQKWAKKAELDL--DAISGRNSLVIDTPRIRKQTR-PFSATKDELAEL 1466
Query: 1358 SERKEE 1363
SE + E
Sbjct: 1467 SEAESE 1472
Score = 60 (26.2 bits), Expect = 5.0e-114, Sum P(3) = 5.0e-114
Identities = 42/186 (22%), Positives = 73/186 (39%)
Query: 94 PRTYHLQCLD--PPLKRIPNGKWQCPKC--TQKN--DQLKPISNLDSISKRARSKIITIK 147
P HL CL PP + +G + TQ + KP +S SK+ ++ I +
Sbjct: 473 PSRSHL-CLQRQPPSSKKSDGSGTYSRLQNTQVRVMSEKKPRKKAESESKQEKANRIISE 531
Query: 148 SQSGVKSSGADKVSQIFGNSILARKRSNKGKSVLALGVKSLEKSLDSSQVDVSCSTKPEN 207
+ + K G + ++ + + A VKS K D+ + +CS E
Sbjct: 532 AIARAKERGERNIPRVMSPENFPSSSVDGKEEKRAQRVKSKPKDRDNRKPK-ACSKLKEK 590
Query: 208 TSAGVPVEGSSSCPNDDDEKQLNASPTDSLADTKFHPAEEVLP-HSQVTKSEQNDEVPVE 266
T G + + K+ + S +D L+D + P HSQ K N +V +
Sbjct: 591 TKIGKLIITLGK-----NHKRRSES-SDELSDAEQMPQHTFKEQHSQ--KRRSNRQVKRK 642
Query: 267 KHEKSS 272
K+ + +
Sbjct: 643 KYAEDA 648
Score = 53 (23.7 bits), Expect = 2.7e-113, Sum P(3) = 2.7e-113
Identities = 14/37 (37%), Positives = 17/37 (45%)
Query: 36 EENLVTSESPRNTPSAKRRLKNEINADRSSTKKKGND 72
E N+ SP N PS+ K E A R +K K D
Sbjct: 541 ERNIPRVMSPENFPSSSVDGKEEKRAQRVKSKPKDRD 577
Score = 50 (22.7 bits), Expect = 5.0e-114, Sum P(3) = 5.0e-114
Identities = 14/62 (22%), Positives = 31/62 (50%)
Query: 1307 SNLQSG-STDLAEGDL---ENDMLGSVKATEWNEETTEDQAESPVAAVDDASAENSERKE 1362
S+L+S S ++ E D + + G + + NE +T++ +E + D +S+ + +
Sbjct: 2818 SDLESSKSVEIKEEDSRGRDQEEKGGTEPSPLNENSTDEGSERASSGSDSSSSSSEDSDS 2877
Query: 1363 EN 1364
N
Sbjct: 2878 SN 2879
Score = 49 (22.3 bits), Expect = 7.1e-113, Sum P(3) = 7.1e-113
Identities = 29/129 (22%), Positives = 52/129 (40%)
Query: 227 KQLNASPTDS-LADTKFHPAEEVLPHSQV---TKSEQNDEVPVEKHEKSSTNGSSGIKFV 282
K+ + S T S L +T+ E P + +K E+ + + E ++ G I V
Sbjct: 488 KKSDGSGTYSRLQNTQVRVMSEKKPRKKAESESKQEKANRIISEAIARAKERGERNIPRV 547
Query: 283 LA---IGASERDRKRKPEVKDEDSQKKLRVDXXXXXXXXXXXXXXXIGTLSPGTSKLHEK 339
++ +S D K + + S+ K R D IG L K H++
Sbjct: 548 MSPENFPSSSVDGKEEKRAQRVKSKPKDR-DNRKPKACSKLKEKTKIGKLIITLGKNHKR 606
Query: 340 QRTNNDEVS 348
+ ++DE+S
Sbjct: 607 RSESSDELS 615
>TAIR|locus:2041644 [details] [associations]
symbol:CHR5 "chromatin remodeling 5" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0003682 "chromatin binding" evidence=ISS] [GO:0004386 "helicase
activity" evidence=IEA;ISS] [GO:0005524 "ATP binding"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM;IEA]
[GO:0006333 "chromatin assembly or disassembly" evidence=ISS]
[GO:0009506 "plasmodesma" evidence=IDA] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0009506 GO:GO:0005524 GO:GO:0005634
EMBL:CP002685 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR025260 Pfam:PF13907 KO:K11367
IPI:IPI00521189 RefSeq:NP_178970.3 UniGene:At.40665 PRIDE:F4IV99
EnsemblPlants:AT2G13370.1 GeneID:815823 KEGG:ath:AT2G13370
OMA:ARNTKSY Uniprot:F4IV99
Length = 1724
Score = 1066 (380.3 bits), Expect = 6.6e-114, Sum P(3) = 6.6e-114
Identities = 258/639 (40%), Positives = 368/639 (57%)
Query: 663 QPQRVISLRSSKDG----TREAFVKWTGLPYDECTWEKLDEPALEKYSHLTDLFVQFERQ 718
Q +R+I+ R SKDG E VKW GL Y E TWEK + A + + D + E
Sbjct: 534 QVERIIADRISKDGLGDVVPEYLVKWQGLSYAEATWEKDVDIAFAQVA--IDEYKARE-V 590
Query: 719 TLKKDASEDELPRGKGDCQQSEIVALTEQPEELKGGALFPHQLEALNWLRKCWHKSKNVI 778
++ E R KG ++ + L EQPE L GG L +QLE LN+L W NVI
Sbjct: 591 SIAVQGKMVEQQRTKG---KASLRKLDEQPEWLIGGTLRDYQLEGLNFLVNSWLNDTNVI 647
Query: 779 LADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLSTMPNWLAEFALWAPNLNVVEYHG 838
LADEMGLGKTV + + + L + P LV+VPLST+ NW EF W P +N++ Y G
Sbjct: 648 LADEMGLGKTVQSVSMLGFLQNTQQIPGPFLVVVPLSTLANWAKEFRKWLPGMNIIVYVG 707
Query: 839 CAKARAIIRQYEWHASDPDNLNKKTSSYKFNVLLTTYEMILADSSHLRGVPWEVLVVDEG 898
+R + +QYE++ N K KFN LLTTYE++L D + L + W L+VDE
Sbjct: 708 TRASREVCQQYEFY-----NEKKVGRPIKFNALLTTYEVVLKDKAVLSKIKWIYLMVDEA 762
Query: 899 HRXXXXXXXXXXXXXXXXXQHRVLLTGTPLQNNIGEMYNLLNFLQPASFPSLSSFEEKFN 958
HR ++++L+TGTPLQN++ E++ LL+FL P F + F E +
Sbjct: 763 HRLKNSEAQLYTALLEFSTKNKLLITGTPLQNSVEELWALLHFLDPGKFKNKDEFVENYK 822
Query: 959 DLTTTQKVE--ELKKLVAPHMLRRLKKDAMQNIPPKTERMVPVELSSIQAEYYRAMLTKN 1016
+L++ + E L + PH+LRR+ KD +++PPK ER++ VE+S +Q +YY+ +L +N
Sbjct: 823 NLSSFNESELANLHLELRPHILRRVIKDVEKSLPPKIERILRVEMSPLQKQYYKWILERN 882
Query: 1017 YQILRNIGKGVA--QQSMLNIVMQLRKVCNHPYLIPGTEPD-SGSVEFLHEMR--IKASA 1071
+ ++ KGV Q S+LNIV++L+K CNHP+L + G + ++ I +S
Sbjct: 883 FH---DLNKGVRGNQVSLLNIVVELKKCCNHPFLFESADHGYGGDINDNSKLDKIILSSG 939
Query: 1072 KLTLLHSMLKVLYKEGHRVLIFSQMTKLLDILEDYLNIEFGPKTYERVDGSVSVGDRQAA 1131
KL +L +L L + HRVLIFSQM ++LDIL +YL++ G + ++R+DGS RQ A
Sbjct: 940 KLVILDKLLVRLRETKHRVLIFSQMVRMLDILAEYLSLR-GFQ-FQRLDGSTKAELRQQA 997
Query: 1132 ITRFNQDKSR-FVFLLSTRSCGLGINLATADTVIIYDSDFNPHADIQAMNRAHRIGQSKR 1190
+ FN S F FLLSTR+ GLGINLATADTV+I+DSD+NP D+QAM+RAHRIGQ +
Sbjct: 998 MDHFNAPASDDFCFLLSTRAGGLGINLATADTVVIFDSDWNPQNDLQAMSRAHRIGQQEV 1057
Query: 1191 LLVYRLVVRASVEERILQLAKKKLMLDQLFVNK-------------SGS---QKEVEDIL 1234
+ +YR V SVEE IL+ AK+K++LD L + K GS + E+ IL
Sbjct: 1058 VNIYRFVTSKSVEEEILERAKRKMVLDHLVIQKLNAEGRLEKRETKKGSNFDKNELSAIL 1117
Query: 1235 RWGTEELFNDSPGINGKDMGENNTSIEEAVRDLEQKHRK 1273
R+G EELF + + I+E + EQ K
Sbjct: 1118 RFGAEELFKEDKNDEESKKRLLSMDIDEILERAEQVEEK 1156
Score = 77 (32.2 bits), Expect = 5.3e-112, Sum P(2) = 5.3e-112
Identities = 34/156 (21%), Positives = 68/156 (43%)
Query: 494 RSVTKECKVTKECKGENAIDLLREDDKDSDPVAVNGKVQDESAVSTEDLGERNDKMVVED 553
RS+ + ++ G + + + + S +V KV + +ED+ + ++ +D
Sbjct: 354 RSLARRGTTLRQNNGRSTNTIGQSSEVRSSTRSVR-KVSYVESEDSEDIDDGKNRKNQKD 412
Query: 554 ADVSLRDNEGLTVSEIHITCESTDKDVDVGKKTSGSVAKRVQEPAVTESAQVKGKAVSYE 613
D+ D + + H + +DV K++ V V++ + E
Sbjct: 413 -DIEEEDADVIEKVLWH-QLKGMGEDVQTNNKSTVPVL-------VSQLFDTEPDWNEME 463
Query: 614 FLVKWVGKSNIHNSWIPESQLKVLAK-RKLENYKAK 648
FL+KW G+S++H W S L+ L+ +K+ NY K
Sbjct: 464 FLIKWKGQSHLHCQWKTLSDLQNLSGFKKVLNYTKK 499
Score = 76 (31.8 bits), Expect = 6.6e-114, Sum P(3) = 6.6e-114
Identities = 24/91 (26%), Positives = 44/91 (48%)
Query: 558 LRDNEGLTVSEIHITCESTDKDVDVGKKTSGSVAKRVQEPAVTESAQVKGKAVSYEFLVK 617
+R L+ EI + S + D+D+ K+ S +R+ +++ G V E+LVK
Sbjct: 504 IRYRTALSREEIEVNDVSKEMDLDIIKQNSQ--VERIIADRISKDGL--GDVVP-EYLVK 558
Query: 618 WVGKSNIHNSWIPESQLKVLAKRKLENYKAK 648
W G S +W + + A+ ++ YKA+
Sbjct: 559 WQGLSYAEATWEKDVDI-AFAQVAIDEYKAR 588
Score = 47 (21.6 bits), Expect = 7.4e-111, Sum P(3) = 7.4e-111
Identities = 7/21 (33%), Positives = 11/21 (52%)
Query: 679 EAFVKWTGLPYDECTWEKLDE 699
E +KW G + C W+ L +
Sbjct: 463 EFLIKWKGQSHLHCQWKTLSD 483
Score = 42 (19.8 bits), Expect = 6.6e-114, Sum P(3) = 6.6e-114
Identities = 25/123 (20%), Positives = 49/123 (39%)
Query: 265 VEKHEKSSTNGSSGIKFVLAIGASERDRKRKPEVKDEDSQKKLRVDXXXXXXXXXXXXXX 324
V + K S+G++ + S R +KRK +D+DS++ D
Sbjct: 305 VRQQSKGFRKSSAGLERK-SFHVSSR-QKRKTSYQDDDSEEDSENDNDEGFRSLARRGTT 362
Query: 325 XIGTLSPGTSKLHEKQ--RTNNDEV-SASLCEVDVGTKGLD-----AQRKDELAEETTDP 376
T+ + + R++ V S E + ++ +D +KD++ EE D
Sbjct: 363 LRQNNGRSTNTIGQSSEVRSSTRSVRKVSYVESE-DSEDIDDGKNRKNQKDDIEEEDADV 421
Query: 377 LDK 379
++K
Sbjct: 422 IEK 424
>UNIPROTKB|F1N734 [details] [associations]
symbol:CHD6 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR002464 InterPro:IPR006576
Pfam:PF00176 Pfam:PF00271 Pfam:PF07533 PROSITE:PS00690
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
SMART:SM00717 Pfam:PF00385 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0003682 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR023780 OMA:CKWATME GeneTree:ENSGT00560000077077
EMBL:DAAA02036652 EMBL:DAAA02036653 EMBL:DAAA02036654
EMBL:DAAA02036655 IPI:IPI00924240 Ensembl:ENSBTAT00000061177
ArrayExpress:F1N734 Uniprot:F1N734
Length = 2720
Score = 1138 (405.7 bits), Expect = 6.7e-114, P = 6.7e-114
Identities = 304/859 (35%), Positives = 443/859 (51%)
Query: 507 KGENAIDLLREDDKDSDPVAVNGKVQDESAVSTEDLGERNDKM--VVEDADVSLRDNEGL 564
K E A++ L D +P + + ESA S + R K ED D + D++G
Sbjct: 201 KSETAVESLELDQGLPNPSLRSPEESTESADSQKRRSGRQVKRRKYNEDLDFKVVDDDGE 260
Query: 565 TVSEIH------ITCESTDKDVDVGKKTSGSVAKRVQEPAVTESAQVKGKAVSYE-FLVK 617
T++ + ++ + + + ++ +++ + E F VK
Sbjct: 261 TIAVLGAGRTSALSASTLAWQAEEPPEDDANIIEKILASKTVQEVHPGEPPFDLELFYVK 320
Query: 618 WVGKSNIHNSWIPESQLKVLAK--RKLENYKAKYGTT--VINICDERWKQPQ-----RVI 668
+ S +H W +L+ + +K++ ++ K + DE P R++
Sbjct: 321 YRNFSYLHCKWATMEELEKDPRIAQKIKRFRNKQAQMKHIFTEPDEDLFNPDYVEVDRIL 380
Query: 669 SLRSSKDG-TREA----FVKWTGLPYDECTWEKLDEPALEKYSHLTDLFVQFERQTLKKD 723
+ +KD T E VKW LPY+E TWE ++ K L V E + +++
Sbjct: 381 EVAHTKDAETGEEVTHYLVKWCSLPYEESTWELEEDVDPAKVKEFESLQVLPEIKHVERP 440
Query: 724 ASEDELPRGKGDCQQSEIVALTEQPEELKGGALFPHQLEALNWLRKCWHKSKNVILADEM 783
AS D Q L + E L +QLE +NWL W+ KN ILADEM
Sbjct: 441 AS---------DSWQK----LEKSREYKNSNQLREYQLEGMNWLLFNWYNRKNCILADEM 487
Query: 784 GLGKTVSACAFISSLYCEFKAKLPCLVLVPLSTMPNWLAEFALWAPNLNVVEYHGCAKAR 843
GLGKT+ + F+S ++ P L++ PLST+ NW EF W +N + YHG +R
Sbjct: 488 GLGKTIQSITFLSEIFLR-GIHGPFLIIAPLSTITNWEREFRTWT-EMNAIVYHGSQISR 545
Query: 844 AIIRQYEWHASDPDNLNKKTSSYKFNVLLTTYEMILADSSHLRGVPWEVLVVDEGHRXXX 903
+I+QYE D N + +KF+V++TT+EMILAD L+ + W +++DE HR
Sbjct: 546 QMIQQYEMVYRDAQG-NPLSGVFKFHVVITTFEMILADCPELKKIHWSCVIIDEAHRLKN 604
Query: 904 XXXXXXXXXXXXXXQHRVLLTGTPLQNNIGEMYNLLNFLQPASFPSLSSFEEKFNDLTTT 963
+H+VLLTGTPLQN++ E+++LLNFL+P+ FPS ++F E+F DL T
Sbjct: 605 RNCKLLEGLKLMALEHKVLLTGTPLQNSVEELFSLLNFLEPSQFPSETAFLEEFGDLKTE 664
Query: 964 QKVEELKKLVAPHMLRRLKKDAMQNIPPKTERMVPVELSSIQAEYYRAMLTKNYQILRNI 1023
++V++L+ ++ P MLRRLK D +N+ PK E ++ VEL++IQ +YYRA+L KN+ L
Sbjct: 665 EQVKKLQSILKPMMLRRLKDDVEKNLAPKQETIIEVELTNIQKKYYRAILEKNFSFL--- 721
Query: 1024 GKGVAQQSMLNIV---MQLRKVCNHPYLIPGTE------------PDSGSVEFLHEMRIK 1068
KG Q +M N++ M+LRK CNHPYLI G E PD+ +F + I+
Sbjct: 722 SKGANQHNMPNLINTMMELRKCCNHPYLISGAEEKILEDFRKTHSPDAP--DFQLQAMIQ 779
Query: 1069 ASAKLTLLHSMLKVLYKEGHRVLIFSQMTKLLDILEDYLNIEFGPKTYERVDGSVSVGDR 1128
A+ KL L+ +L L GH+VLIFSQM + LDILEDYL I+ TYER+DG V R
Sbjct: 780 AAGKLVLIDKLLPKLIAGGHKVLIFSQMVRCLDILEDYL-IQ-RRYTYERIDGRVRGNLR 837
Query: 1129 QAAITRF-NQDKSRFVFLLSTRSCGLGINLATADTVIIYDSDFNPHADIQAMNRAHRIGQ 1187
QAAI RF D RFVFLL TR+ GLGINL ADT II+DSD+NP D+QA R HRIGQ
Sbjct: 838 QAAIDRFCKPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQ 897
Query: 1188 SKRLLVYRLVVRASVEERILQLAKKKLMLDQLF---VNKSGSQKEVEDILRWGTEELFND 1244
SK + VYRL+ R S E + A KL LD+ +N+ GS V+ + + E+L
Sbjct: 898 SKAVKVYRLITRNSYEREMFDKASLKLGLDKAVLQDINRKGSTNGVQQLSKMEVEDLLRK 957
Query: 1245 SPGINGKDMGENNTSIEEAVRDLEQKHRKRGGGLGDVYQDK-CTEGSTKIVWDENAIARL 1303
G G M E + + D++Q ++R + + K T V N
Sbjct: 958 --GAYGALMDEEDEGSKFCEEDIDQILQRRTHTITIQSEGKGSTFAKASFVASGNRTDIS 1015
Query: 1304 LDRSNLQSGSTDLAEGDLE 1322
LD N +AE D E
Sbjct: 1016 LDDPNFWQKWAKIAELDTE 1034
>UNIPROTKB|F1NLW6 [details] [associations]
symbol:CHD6 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271 Pfam:PF07533
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
SMART:SM00592 Pfam:PF00385 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
GeneTree:ENSGT00560000077077 EMBL:AADN02019534 EMBL:AADN02019532
EMBL:AADN02019533 IPI:IPI00572954 Ensembl:ENSGALT00000002030
ArrayExpress:F1NLW6 Uniprot:F1NLW6
Length = 2005
Score = 1120 (399.3 bits), Expect = 1.3e-113, Sum P(2) = 1.3e-113
Identities = 288/796 (36%), Positives = 423/796 (53%)
Query: 523 DPVAVNGKVQDESAVSTEDLGERNDKMVV-----EDADVSLRDNEGLTVSEIH------I 571
D ++ + + +ESA S + R+ + V ED D + D++G T++ + +
Sbjct: 11 DLLSPSAQSPEESAESADSQKRRSGRQVKRRKYNEDLDFKVVDDDGETIAVLGAGRTSAL 70
Query: 572 TCESTDKDVDVGKKTSGSVAKRVQEPAVTESAQVKGKAV--SYEFLVKWVGKSNIHNSW- 628
+ + + + ++ +++ + + G EF VK+ S +H W
Sbjct: 71 SASTLAWQAEEPPEDDANIIEKILASRMVQKETHPGGLTFEMEEFYVKYRNFSYLHCKWA 130
Query: 629 -IPESQLKVLAKRKLENYKAKYGTT--VINICDERWKQPQ-----RVISLRSSKD-GTRE 679
+ E + +K++ ++ K + DE P R++ + +KD T E
Sbjct: 131 TLEELEKDPRISQKIKRFRNKQAQMKHIFTEPDEDLFNPDYVEVDRILEVAHTKDPDTGE 190
Query: 680 A----FVKWTGLPYDECTWEKLDEPALEKYSHLTDLFVQFERQTLKKDASEDELPRGKGD 735
VKW LPY+E TWE ++ K L + E + +++ ASE
Sbjct: 191 EVTHYLVKWCSLPYEESTWELEEDVDPVKIKEFEALQIPPEIKHMERPASES-------- 242
Query: 736 CQQSEIVALTEQPEELKGGALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFI 795
Q+ E + E L +QLE +NWL W+ KN ILADEMGLGKT+ + F+
Sbjct: 243 WQKLE-----KSREYKNSNQLREYQLEGMNWLLFNWYNRKNCILADEMGLGKTIQSITFL 297
Query: 796 SSLYCEFKAKLPCLVLVPLSTMPNWLAEFALWAPNLNVVEYHGCAKARAIIRQYEWHASD 855
S ++ P L++ PLST+ NW EF W +N + YHG +R +I+QYE D
Sbjct: 298 SEIFL-MGIHGPFLIIAPLSTITNWEREFRTWT-EMNAIVYHGSQISRQMIQQYEMVYRD 355
Query: 856 PDNLNKKTSSYKFNVLLTTYEMILADSSHLRGVPWEVLVVDEGHRXXXXXXXXXXXXXXX 915
N +KF V++TT+EMILAD L+ + W +V+DE HR
Sbjct: 356 TQG-NPLPGIFKFQVVITTFEMILADCPELKKIQWRCVVIDEAHRLKNRNCKLLEGLKLM 414
Query: 916 XXQHRVLLTGTPLQNNIGEMYNLLNFLQPASFPSLSSFEEKFNDLTTTQKVEELKKLVAP 975
+H+VLLTGTPLQN++ E+++LLNFL+P FPS ++F E+F DL T ++V++L+ ++ P
Sbjct: 415 ALEHKVLLTGTPLQNSVEELFSLLNFLEPQQFPSETAFLEEFGDLKTEEQVKKLQSILKP 474
Query: 976 HMLRRLKKDAMQNIPPKTERMVPVELSSIQAEYYRAMLTKNYQILRNIGKGVAQQSMLNI 1035
MLRRLK D +N+ PK E ++ VEL++IQ +YYRA+L KN+ L KG Q +M N+
Sbjct: 475 MMLRRLKDDVEKNLAPKQETIIEVELTNIQKKYYRAILEKNFSFL---SKGANQHNMPNL 531
Query: 1036 V---MQLRKVCNHPYLIPGTEPD-------SGSVE---FLHEMRIKASAKLTLLHSMLKV 1082
+ M+LRK CNHPYLI G E + S E F + I+A+ KL L+ +L
Sbjct: 532 INTMMELRKCCNHPYLINGAEEKILEDFRKTHSPEAPDFQLQAMIQAAGKLVLIDKLLPK 591
Query: 1083 LYKEGHRVLIFSQMTKLLDILEDYLNIEFGPKTYERVDGSVSVGDRQAAITRF-NQDKSR 1141
L GH+VLIFSQM + LDILEDYL I+ TYER+DG V RQAAI RF D R
Sbjct: 592 LIAGGHKVLIFSQMVRCLDILEDYL-IQ-RRYTYERIDGRVRGNLRQAAIDRFCKPDSDR 649
Query: 1142 FVFLLSTRSCGLGINLATADTVIIYDSDFNPHADIQAMNRAHRIGQSKRLLVYRLVVRAS 1201
FVFLL TR+ GLGINL ADT II+DSD+NP D+QA R HRIGQSK + VYRL+ R S
Sbjct: 650 FVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVKVYRLITRNS 709
Query: 1202 VEERILQLAKKKLMLDQLF---VNKSGSQKEVEDILRWGTEELFNDSPGINGKDMGENNT 1258
E + A KL LD+ +N+ G V+ + + E+L G G M E +
Sbjct: 710 YEREMFDKASLKLGLDKAVLQDINRKGGTNGVQQLSKMEVEDLLRK--GAYGALMDEEDE 767
Query: 1259 SIEEAVRDLEQKHRKR 1274
+ D++Q ++R
Sbjct: 768 GSKFCEEDIDQILQRR 783
Score = 43 (20.2 bits), Expect = 1.3e-113, Sum P(2) = 1.3e-113
Identities = 33/157 (21%), Positives = 68/157 (43%)
Query: 1198 VRASVEERILQLAKKKLMLDQLFVNKSGSQKEVEDILRWGTEELFNDSPGINGKDMGENN 1257
V+ E+R + L ++K M + ++S S+++ E+ +E + + G++G +
Sbjct: 1523 VKVPPEQRFINLLQEKGMEAKAGPSQSHSEEDEEEEDDDNSEVAADVTEGLSGP---KAT 1579
Query: 1258 TSIEEAVRDLEQKHRKRGGGLGDVYQDKCTEG-STKIVWDENAIARLLDRSN--LQS--- 1311
S +E + D+ + G G + EG + +EN + L D + L+
Sbjct: 1580 ASCDE-LGDVNSERGSLGLGTLKAPMEPGPEGRENHSLHEENTLQHLPDGPDKYLEEESK 1638
Query: 1312 GSTDLAEGDLEN--DMLGSVKATEWNEETTEDQAESP 1346
ST + G++++ D A E+T +E P
Sbjct: 1639 SSTSVLPGEIDDLQDARAPTIAQLLQEKTLYSFSEWP 1675
>FB|FBgn0250786 [details] [associations]
symbol:Chd1 "Chromodomain-helicase-DNA-binding protein 1"
species:7227 "Drosophila melanogaster" [GO:0005705 "polytene
chromosome interband" evidence=IDA] [GO:0004386 "helicase activity"
evidence=ISS] [GO:0003682 "chromatin binding" evidence=IDA]
[GO:0005703 "polytene chromosome puff" evidence=IDA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0035042 "fertilization,
exchange of chromosomal proteins" evidence=IMP] [GO:0048477
"oogenesis" evidence=IMP] [GO:0007476 "imaginal disc-derived wing
morphogenesis" evidence=IMP] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR002464 Pfam:PF00176 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298
SMART:SM00490 Pfam:PF00385 GO:GO:0005524 GO:GO:0005634
EMBL:AE014134 GO:GO:0006355 GO:GO:0003677 GO:GO:0048477
GO:GO:0006351 GO:GO:0003682 GO:GO:0004386 GO:GO:0007476
InterPro:IPR016197 SUPFAM:SSF54160 HSSP:Q97XQ5 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598 GO:GO:0005703
InterPro:IPR025260 Pfam:PF13907 EMBL:L77907 PIR:T13944
RefSeq:NP_477197.1 ProteinModelPortal:Q7KU24 SMR:Q7KU24
STRING:Q7KU24 PaxDb:Q7KU24 PRIDE:Q7KU24 EnsemblMetazoa:FBtr0077674
GeneID:33505 KEGG:dme:Dmel_CG3733 UCSC:CG3733-RA CTD:1105
FlyBase:FBgn0250786 GeneTree:ENSGT00560000076896 InParanoid:Q7KU24
KO:K11367 OrthoDB:EOG45MKM5 PhylomeDB:Q7KU24 ChiTaRS:CHD1
GenomeRNAi:33505 NextBio:783939 Bgee:Q7KU24 GO:GO:0005705
GO:GO:0035042 Uniprot:Q7KU24
Length = 1883
Score = 1105 (394.0 bits), Expect = 1.6e-113, Sum P(2) = 1.6e-113
Identities = 291/781 (37%), Positives = 426/781 (54%)
Query: 526 AVNGK-VQDESAVSTEDLGE-RNDKMVVEDADVSLRDNEGLTVSEIHITCESTDKDVDVG 583
AV+ K ++ A +EDL E D+ + + E E I + K G
Sbjct: 277 AVSYKEASEDEATDSEDLLEFEYDESQAATTAATAEEEEKCETIE-RILAQRAGKRGCTG 335
Query: 584 KKTS-GSVAKRVQEP-AVTESAQVKGKAVSYEFLVKWVGKSNIHNSWIPESQLKVL-AK- 639
+T+ ++ + +P A + Q +FL+KW G S IHN+W E+ L+ + AK
Sbjct: 336 NQTTIYAIEENGFDPHAGFDEKQTPDAETEAQFLIKWKGWSYIHNTWESEATLRDMKAKG 395
Query: 640 -RKLENY--KAK---Y-----GTTVINI--CD--------ERWKQPQRVISLRSSK--DG 676
+KL+N+ K K Y G I+ C + + R+I+ + SK DG
Sbjct: 396 MKKLDNFIKKEKEQAYWRRYAGPEDIDYFECQLELQHELLKSYNNVDRIIA-KGSKPDDG 454
Query: 677 TREAFVKWTGLPYDECTWEKLDEPALEKYSHLTDLFVQFERQTLKKDASEDELPRGKGDC 736
T E KW LPY E TWE L K+ + F +R++ K S +
Sbjct: 455 TEEYLCKWQSLPYAESTWEDA-ALVLRKWQRCAEQFN--DRESSKCTPSR----HCRVIK 507
Query: 737 QQSEIVALTEQPEELKGG-ALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFI 795
+ + + QPE L G L +Q++ LNWL W K +VILADEMGLGKT+ F+
Sbjct: 508 YRPKFSRIKNQPEFLSSGLTLRDYQMDGLNWLLHSWCKENSVILADEMGLGKTIQTICFL 567
Query: 796 SSLYCEFKAKLPCLVLVPLSTMPNWLAEFALWAPNLNVVEYHGCAKARAIIRQYEWHASD 855
SL+ P L +VPLSTM W EF LWAP++NVV Y G K+R +I+QYEW
Sbjct: 568 YSLFKIHHLYGPFLCVVPLSTMTAWQREFDLWAPDMNVVTYLGDIKSRELIQQYEWQFES 627
Query: 856 PDNLNKKTSSYKFNVLLTTYEMILADSSHLRGVPWEVLVVDEGHRXXXXXXXXXXXXXXX 915
L KFN +LTTYE++L D L + W L+VDE HR
Sbjct: 628 SKRL-------KFNCILTTYEIVLKDKQFLGTLQWAALLVDEAHRLKNDDSLLYKSLKEF 680
Query: 916 XXQHRVLLTGTPLQNNIGEMYNLLNFLQPASFPSLSSFEEKFNDLTTTQKVEELKKLVAP 975
HR+L+TGTPLQN++ E++ LL+F+ P F + +FE + + + L + + P
Sbjct: 681 DTNHRLLITGTPLQNSLKELWALLHFIMPDKFDTWENFEVQHGN-AEDKGYTRLHQQLEP 739
Query: 976 HMLRRLKKDAMQNIPPKTERMVPVELSSIQAEYYRAMLTKNYQILRNIGKGVAQQSMLNI 1035
++LRR+KKD +++P K E+++ VE++S+Q +YY+ +LTKN+ LR GK + + LNI
Sbjct: 740 YILRRVKKDVEKSLPAKVEQILRVEMTSLQKQYYKWILTKNFDALRK-GKRGSTSTFLNI 798
Query: 1036 VMQLRKVCNHPYLIPGTEPDSGSVEFLHEMR--IKASAKLTLLHSMLKVLYKEGHRVLIF 1093
V++L+K CNH LI +E + ++ ++ +K S KL LL +L L + GHRVLIF
Sbjct: 799 VIELKKCCNHAALIRPSEFELMGLQQDEALQTLLKGSGKLVLLDKLLCRLKETGHRVLIF 858
Query: 1094 SQMTKLLDILEDYLNIEFGPKTYERVDGSVSVGDRQAAITRFNQDKSR-FVFLLSTRSCG 1152
SQM ++LD+L DYL P ++R+DGS+ R+ A+ FN + S+ F FLLSTR+ G
Sbjct: 859 SQMVRMLDVLADYLQKRHFP--FQRLDGSIKGEMRRQALDHFNAEGSQDFCFLLSTRAGG 916
Query: 1153 LGINLATADTVIIYDSDFNPHADIQAMNRAHRIGQSKRLLVYRLVVRASVEERILQLAKK 1212
LGINLATADTVII+DSD+NP D+QA RAHRIGQ ++ +YRLV SVEE+I++ AK+
Sbjct: 917 LGINLATADTVIIFDSDWNPQNDLQAQARAHRIGQKNQVNIYRLVTARSVEEQIVERAKQ 976
Query: 1213 KLMLDQLFVNKSGSQ-KEVEDILRWGTEELFNDSPGINGKDMGEN-NTSIEEAVRDLEQK 1270
K++LD L + + + + V D + G N +P N D+ EE +D EQ+
Sbjct: 977 KMVLDHLVIQRMDTTGRTVLD--KSGNGHSSNSNP-FNKDDLSAILKFGAEELFKD-EQE 1032
Query: 1271 H 1271
H
Sbjct: 1033 H 1033
Score = 55 (24.4 bits), Expect = 1.6e-113, Sum P(2) = 1.6e-113
Identities = 32/175 (18%), Positives = 61/175 (34%)
Query: 207 NTSAGVPVEGSSSCPNDDDEKQLNASPTDSLADTKFHPAEEVLPHSQVTKSEQNDEVPVE 266
NTS+ +P + +++ E +D+ AD + V P S + SE+ +E
Sbjct: 123 NTSSSLPKPEQNEEEDNETEAGQQQPASDASADESSDSSANVSPTSSSSSSEEEEEDYRP 182
Query: 267 KHEKSSTNGSSGIKFVLAIGASERDRKRKPEVKDEDSQKKLRVDXXXXXXXXXXXXXXXI 326
K + + + + A + K+K DE + + D
Sbjct: 183 KRTRQARKPPTAAEKSKKAPAPKN--KKKTWDSDESDESEDSDDEVSTAQKRKPAATTSR 240
Query: 327 GTLSPGTSKLHEK---QRTNNDEVSASLCEVDVGTKGLDAQRKDELAEETTDPLD 378
L+ + K ++D+ ++ C KG K+ +E TD D
Sbjct: 241 SKLAQQQQRRRVKPFSSEDSDDDDASKRCATR--RKGAAVSYKEASEDEATDSED 293
Score = 51 (23.0 bits), Expect = 4.3e-113, Sum P(2) = 4.3e-113
Identities = 21/71 (29%), Positives = 30/71 (42%)
Query: 209 SAGVPVEGSSSCPNDDDEKQLNASPTD-SLADTKFHPAEEVLPHSQVTKSEQNDEVPVEK 267
S+G + SS N D + + P D SL+ F P T +D+
Sbjct: 38 SSGSDSDSDSSSGNSSDGRS-SPEPEDKSLSVAGFPPTAAAAQADSKTNGFTDDQ----- 91
Query: 268 HEKSSTNGSSG 278
E SS++GSSG
Sbjct: 92 -EDSSSDGSSG 101
Score = 40 (19.1 bits), Expect = 6.3e-112, Sum P(2) = 6.3e-112
Identities = 19/59 (32%), Positives = 25/59 (42%)
Query: 191 SLDSSQVDVS--CSTKPENTSAGVPVEGSSSCPNDDDEKQLNASPTDSLADTKFHPAEE 247
S DS D S C+T+ + A V + +S D E L +S A T AEE
Sbjct: 257 SEDSDDDDASKRCATRRKG--AAVSYKEASEDEATDSEDLLEFEYDESQAATTAATAEE 313
>TAIR|locus:2116747 [details] [associations]
symbol:PKR2 "PICKLE RELATED 2" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM;IEA] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 EMBL:CP002687
GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
IPI:IPI00523018 RefSeq:NP_194918.2 UniGene:At.54572
ProteinModelPortal:F4JTF6 SMR:F4JTF6 PRIDE:F4JTF6
EnsemblPlants:AT4G31900.1 GeneID:829320 KEGG:ath:AT4G31900
OMA:SYWESES ArrayExpress:F4JTF6 Uniprot:F4JTF6
Length = 1202
Score = 999 (356.7 bits), Expect = 1.7e-113, Sum P(3) = 1.7e-113
Identities = 216/484 (44%), Positives = 318/484 (65%)
Query: 795 ISSLYCEFKAKL-PCLVLVPLSTMPNWLAEFALWAPNLNVVEYHGCAKARAIIRQYEWHA 853
I+ L F+ L P LV+ PLST+ NW EFA WAP++NVV Y G ++AR +I ++E++
Sbjct: 261 IAFLASLFEENLSPHLVVAPLSTIRNWEREFATWAPHMNVVMYTGDSEARDVIWEHEFYF 320
Query: 854 SDPDNLNKKTSSYKFNVLLTTYEMILADSSHLRGVPWEVLVVDEGHRXXXXXXXXXXXXX 913
S+ +K+ KF+VLLTTYEM+ S L + W +++DEGHR
Sbjct: 321 SE----GRKS---KFDVLLTTYEMVHPGISVLSPIKWTCMIIDEGHRLKNQKSKLYSSLS 373
Query: 914 XXXXQHRVLLTGTPLQNNIGEMYNLLNFLQPASFPSLSSFEEKFNDLTTTQKVEELKKLV 973
+H VLLTGTPLQNN+ E++ L++FL F SL EKF D+ +++ L +++
Sbjct: 374 QFTSKHIVLLTGTPLQNNLNELFALMHFLDADKFGSL----EKFQDINKEEQISRLHQML 429
Query: 974 APHMLRRLKKDAMQN-IPPKTERMVPVELSSIQAEYYRAMLTKNYQILRNIGKGVAQQSM 1032
APH+LRRLKKD +++ +PPK E ++ V++SS Q E Y+A++T NYQ+L K A+ S
Sbjct: 430 APHLLRRLKKDVLKDKVPPKKELILRVDMSSQQKEVYKAVITNNYQVLTK--KRDAKIS- 486
Query: 1033 LNIVMQLRKVCNHPYLIPGTEPDSGSVEFLHEMRIKASAKLTLLHSMLKVLYKEGHRVLI 1092
N++M+LR+VC+HPYL+P EP ++AS KL LL M+ L ++GHRVLI
Sbjct: 487 -NVLMKLRQVCSHPYLLPDFEPRFEDANEAFTKLLEASGKLQLLDKMMVKLKEQGHRVLI 545
Query: 1093 FSQMTKLLDILEDYLNIEFGPKTYERVDGSVSVGDRQAAITRFNQDKS-RFVFLLSTRSC 1151
++Q L +LEDY F YER+DG +S +RQ I RFN + S RF FLLSTR+
Sbjct: 546 YTQFQHTLYLLEDYFT--FKNWNYERIDGKISGPERQVRIDRFNAENSNRFCFLLSTRAG 603
Query: 1152 GLGINLATADTVIIYDSDFNPHADIQAMNRAHRIGQSKRLLVYRLVVRASVEERILQLAK 1211
G+GINLATADTVIIYDSD+NPHAD+QAM R HR+GQ+ ++++YRL+ + +VEER++++ K
Sbjct: 604 GIGINLATADTVIIYDSDWNPHADLQAMARVHRLGQTNKVMIYRLIHKGTVEERMMEITK 663
Query: 1212 KKLMLDQLFVNKSG-SQKEVEDILRWGTEELF---NDSPGINGKDMGENNTSIEEAVRDL 1267
K++L+ L V K Q E++DI+++G++ELF ND G +GK + ++ +IE+ L
Sbjct: 664 NKMLLEHLVVGKQHLCQDELDDIIKYGSKELFSEENDEAGRSGK-IHYDDAAIEQL---L 719
Query: 1268 EQKH 1271
++ H
Sbjct: 720 DRNH 723
Score = 855 (306.0 bits), Expect = 4.4e-87, Sum P(2) = 4.4e-87
Identities = 231/678 (34%), Positives = 366/678 (53%)
Query: 613 EFLVKWVGKSNIHNSWIPESQ------------LKVLAKR---KLENYKAKYGTTVINIC 657
++LVKW G S +H SW+PE + LK+ R ++ + A+ G
Sbjct: 78 QYLVKWKGLSYLHCSWVPEQEFEKAYKSHPHLKLKLRVTRFNAAMDVFIAENGAHEFIAI 137
Query: 658 DERWKQPQRVISLRSSKDGTREAFVKWTGLPYDECTWEKLDEPALEKYSHLTDLFVQFER 717
WK R+I+ R DG E VK+ L Y WE E + + + F
Sbjct: 138 RPEWKTVDRIIACREGDDG-EEYLVKYKELSYRNSYWES--ESDISDFQNEIQRFKDINS 194
Query: 718 QTLKKDASEDELPRGKGDCQQSEIVALTEQPEELKGGALFPHQLEALNWLRKCWHKSKNV 777
+ + E+E R + + +Q ++ PE L G L +QLE LN+LR W K NV
Sbjct: 195 SSRRDKYVENE--RNREEFKQFDLT-----PEFLTG-TLHTYQLEGLNFLRYSWSKKTNV 246
Query: 778 ILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLSTMPNWLAEFALWAPNLNVVEYH 837
ILADEMGLGKT+ + AF++SL+ E + P LV+ PLST+ NW EFA WAP++NVV Y
Sbjct: 247 ILADEMGLGKTIQSIAFLASLFEENLS--PHLVVAPLSTIRNWEREFATWAPHMNVVMYT 304
Query: 838 GCAKARAIIRQYEWHASDPDNLNKKTSSYKFNVLLTTYEMILADSSHLRGVPWEVLVVDE 897
G ++AR +I ++E++ S+ +K+ KF+VLLTTYEM+ S L + W +++DE
Sbjct: 305 GDSEARDVIWEHEFYFSE----GRKS---KFDVLLTTYEMVHPGISVLSPIKWTCMIIDE 357
Query: 898 GHRXXXXXXXXXXXXXXXXXQHRVLLTGTPLQNNIGEMYNLLNFLQPASFPSLSSFEEKF 957
GHR +H VLLTGTPLQNN+ E++ L++FL F SL EKF
Sbjct: 358 GHRLKNQKSKLYSSLSQFTSKHIVLLTGTPLQNNLNELFALMHFLDADKFGSL----EKF 413
Query: 958 NDLTTTQKVEELKKLVAPHMLRRLKKDAMQN-IPPKTERMVPVELSSIQAEYYRAMLTKN 1016
D+ +++ L +++APH+LRRLKKD +++ +PPK E ++ V++SS Q E Y+A++T N
Sbjct: 414 QDINKEEQISRLHQMLAPHLLRRLKKDVLKDKVPPKKELILRVDMSSQQKEVYKAVITNN 473
Query: 1017 YQILRNIGKGVAQQSMLNIVMQLRKVCNHPYLIPGTEPDSGSVEFLHEMRIKASAKLTLL 1076
YQ+L K A+ S N++M+LR+VC+HPYL+P EP ++AS KL LL
Sbjct: 474 YQVLTK--KRDAKIS--NVLMKLRQVCSHPYLLPDFEPRFEDANEAFTKLLEASGKLQLL 529
Query: 1077 HSMLKVLYKEGHRVLIFSQMTKLLDILEDYLNIE-FGPKTYE-RVDG---SVSVGDRQAA 1131
M+ L ++GHRVLI++Q L +LEDY + + + + ++ G V + DR A
Sbjct: 530 DKMMVKLKEQGHRVLIYTQFQHTLYLLEDYFTFKNWNYERIDGKISGPERQVRI-DRFNA 588
Query: 1132 ITRFNQDKSRFVFLLSTRSCGLGINLATADTVIIYD----SDFNPHADIQAMNRAHRIGQ 1187
N ++ F+ G+ + A + D +D A + + + +++
Sbjct: 589 E---NSNRFCFLLSTRAGGIGINLATADTVIIYDSDWNPHADLQAMARVHRLGQTNKVMI 645
Query: 1188 SKRLLVYRLVVRASVEERILQLAKKKLMLDQLFVNKSGSQKEVEDILRWGTEELF---ND 1244
+ L+++ V + E I + K L+ + + Q E++DI+++G++ELF ND
Sbjct: 646 YR--LIHKGTVEERMME-ITK--NKMLLEHLVVGKQHLCQDELDDIIKYGSKELFSEEND 700
Query: 1245 SPGINGKDMGENNTSIEE 1262
G +GK + ++ +IE+
Sbjct: 701 EAGRSGK-IHYDDAAIEQ 717
Score = 80 (33.2 bits), Expect = 1.7e-113, Sum P(3) = 1.7e-113
Identities = 26/91 (28%), Positives = 49/91 (53%)
Query: 1277 GLGDVYQDKCTEG--STKIVWDENAIARLLDRSNLQSGSTDLAEGDLENDMLGSVKATEW 1334
G +++ ++ E S KI +D+ AI +LLDR+++ + L + + E D L + K +
Sbjct: 690 GSKELFSEENDEAGRSGKIHYDDAAIEQLLDRNHVDAVEVSLDDEE-ETDFLKNFKVASF 748
Query: 1335 NEETTEDQAESPVAAVDDASAENSERKEENA 1365
E +D+ E+ AA+++A A + NA
Sbjct: 749 --EYVDDENEA--AALEEAQAIENNSSVRNA 775
Score = 75 (31.5 bits), Expect = 1.7e-113, Sum P(3) = 1.7e-113
Identities = 21/61 (34%), Positives = 30/61 (49%)
Query: 656 ICDERWKQPQRVISLRSSKDGT------REAFVKWTGLPYDECTW--EKLDEPALEKYSH 707
I D W+ P + SS +GT ++ VKW GL Y C+W E+ E A + + H
Sbjct: 50 ILDREWR-PTASNNPNSSDNGTPTLVVVKQYLVKWKGLSYLHCSWVPEQEFEKAYKSHPH 108
Query: 708 L 708
L
Sbjct: 109 L 109
Score = 47 (21.6 bits), Expect = 1.5e-110, Sum P(3) = 1.5e-110
Identities = 9/17 (52%), Positives = 13/17 (76%)
Query: 400 ELQQVDRVLGCRVKGDD 416
E + VDR++ CR +GDD
Sbjct: 140 EWKTVDRIIACR-EGDD 155
>ZFIN|ZDB-GENE-030131-6320 [details] [associations]
symbol:chd8 "chromodomain helicase DNA binding
protein 8" species:7955 "Danio rerio" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0016817 "hydrolase activity, acting on acid anhydrides"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0071339 "MLL1 complex" evidence=ISS] [GO:0016055 "Wnt receptor
signaling pathway" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0016568 "chromatin modification"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271
Pfam:PF07533 PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 SMART:SM00717 Pfam:PF00385
ZFIN:ZDB-GENE-030131-6320 GO:GO:0005524 GO:GO:0006355 GO:GO:0016055
GO:GO:0003677 GO:GO:0006351 GO:GO:0003682 GO:GO:0016568
GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0071339
InterPro:IPR023780 PROSITE:PS00598 EMBL:AL928674 IPI:IPI00919855
UniGene:Dr.81397 PRIDE:B0R0I6 HOVERGEN:HBG107676 OrthoDB:EOG4ZPDTC
Uniprot:B0R0I6
Length = 2511
Score = 1101 (392.6 bits), Expect = 2.8e-113, Sum P(3) = 2.8e-113
Identities = 274/725 (37%), Positives = 391/725 (53%)
Query: 613 EFLVKWVGKSNIHNSWIPESQLKVLAK--RKLENYKAKYGTTVINIC--DERWKQPQ--- 665
EF VK+ S +H W QL+ + +KL+ +K K + N+ DE P
Sbjct: 703 EFFVKYKNYSYMHCEWASLEQLERDKRIHQKLKRFKTKQAQ-MRNLFQEDEEPFNPDYVE 761
Query: 666 --RVISLRSSKD---GTREAF--VKWTGLPYDECTWEKLDEPALEKYSHLTDLFVQFERQ 718
R++ S D G + VKW LPY++ TWE ++ K ++ +
Sbjct: 762 VDRILDESHSVDKDNGEPVVYYLVKWCSLPYEDATWELKEDVDEGKVEEFRK--IESRQP 819
Query: 719 TLKKDASEDELPRGKGDCQQSEIVALTEQPEELKGGALFPHQLEALNWLRKCWHKSKNVI 778
LK+ PR + L E E G L +QLE +NWL W+ +N I
Sbjct: 820 RLKRT------PRPAASAWKK----LDESTEYKNGNQLREYQLEGVNWLLFNWYNRQNCI 869
Query: 779 LADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLSTMPNWLAEFALWAPNLNVVEYHG 838
LADEMGLGKT+ + A +S ++ + P +++ PLST+ NW EF+ W ++N + YHG
Sbjct: 870 LADEMGLGKTIQSIALLSEMFSA-GVQSPFMIIAPLSTITNWEREFSNWT-DMNAIVYHG 927
Query: 839 CAKARAIIRQYEWHASDPDNLNKKTSSYKFNVLLTTYEMILADSSHLRGVPWEVLVVDEG 898
+R +I+QYE + D D + +YKF+ L+TT+EMIL+D LR + W +V+DE
Sbjct: 928 SLASRQMIQQYEMYCKD-DKGHLIPGAYKFDALITTFEMILSDCPELREISWRCVVIDEA 986
Query: 899 HRXXXXXXXXXXXXXXXXXQHRVLLTGTPLQNNIGEMYNLLNFLQPASFPSLSSFEEKFN 958
HR +H+VLLTGTPLQN + E+++LL+FL+PA FPS F +F
Sbjct: 987 HRLKNRNCKLLDSLKMLEIEHKVLLTGTPLQNTVEELFSLLHFLEPAQFPSEIEFLREFG 1046
Query: 959 DLTTTQKVEELKKLVAPHMLRRLKKDAMQNIPPKTERMVPVELSSIQAEYYRAMLTKNYQ 1018
DL T ++V++L+ ++ P MLRRLK+D +N+ PK E ++ VEL+ +Q +YYRA+L +N+
Sbjct: 1047 DLKTEEQVQKLQSILKPMMLRRLKEDVEKNLAPKQETIIEVELTDVQKKYYRAILERNFS 1106
Query: 1019 ILRNIGKGVAQQS----MLNIVMQLRKVCNHPYLIPGTEP----------DSGSVEFLHE 1064
L G Q S +LN +M+LRK CNHPYLI G E D + +F +
Sbjct: 1107 FL---SMGATQNSNVPNLLNTMMELRKCCNHPYLITGAEEKIVSELREVYDPLAPDFHLQ 1163
Query: 1065 MRIKASAKLTLLHSMLKVLYKEGHRVLIFSQMTKLLDILEDYLNIEFGPKTYERVDGSVS 1124
++++ KL LL +L L GH+VLIFSQM + LDILEDYL + YER+DG V
Sbjct: 1164 ALVRSAGKLVLLDKLLPRLKAGGHKVLIFSQMVRCLDILEDYLIHK--RYLYERIDGRVR 1221
Query: 1125 VGDRQAAITRFNQ-DKSRFVFLLSTRSCGLGINLATADTVIIYDSDFNPHADIQAMNRAH 1183
RQAAI RF++ D RFVFLL TR+ GLGINL ADT +I+DSD+NP D+QA R H
Sbjct: 1222 GNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLTAADTCVIFDSDWNPQNDLQAQARCH 1281
Query: 1184 RIGQSKRLLVYRLVVRASVEERILQLAKKKLMLDQLFVNKSGSQKE--VEDILRWGTEEL 1241
RIGQSK + VYRL+ R S E +L A KL LD+ + KE ++ + E+L
Sbjct: 1282 RIGQSKAVKVYRLITRNSYEREMLDKASLKLGLDRAVLQSMSGNKESSIQQFSKKEIEDL 1341
Query: 1242 FNDSPGINGKDMGENNTSIEEAVRDLEQKHRKRGGGLGDVYQDK-CTEGSTKIVWDENAI 1300
G M EN+ D++Q ++R + + K T V EN
Sbjct: 1342 LRK--GAYAAIMDENDEGSRFCEEDIDQILQRRATTITIESEGKGSTFSKASFVASENRT 1399
Query: 1301 ARLLD 1305
LD
Sbjct: 1400 DIALD 1404
Score = 48 (22.0 bits), Expect = 2.8e-113, Sum P(3) = 2.8e-113
Identities = 25/112 (22%), Positives = 47/112 (41%)
Query: 118 KCTQKNDQLKPISNLDSISKRARSKIITIK-------SQSGVKSSGADKVSQIFGNSILA 170
K + DQL ++ + A++K++TI+ +Q G K + G+ +
Sbjct: 325 KLVLQGDQLAALAQAKAGQTGAQAKVLTIQLQVQQQPNQQGAKFQLVSGAANAGGSPQVV 384
Query: 171 RKRSNKGKSVLALGVKSL---EKSLDSSQVDVSCSTKPENTSAGVPVEGSSS 219
+ +G LA+ +K L + + SS K NTSA G+++
Sbjct: 385 QISQGQGGQRLAVPLKLLLQPQSNTVSSAGGAVSVVKVINTSAAGSTSGTTT 436
Score = 47 (21.6 bits), Expect = 3.5e-113, Sum P(3) = 3.5e-113
Identities = 13/45 (28%), Positives = 22/45 (48%)
Query: 187 SLEKSLDSSQVDVSCSTKPENTSAGVPVEGSSSCPNDDDEKQLNA 231
S++ SL + +T ++S GVPV G+ P + Q+ A
Sbjct: 100 SIQPSLSVASNSSGAATVLLSSSLGVPVSGAQVTPQQQTQ-QITA 143
Score = 45 (20.9 bits), Expect = 2.8e-113, Sum P(3) = 2.8e-113
Identities = 11/54 (20%), Positives = 23/54 (42%)
Query: 519 DKDSDPVAVNGKVQDESAVSTEDLGERNDKMVVEDADVSLRDNEGLTVSEIHIT 572
D D P +++E + + K ED D+ + D+E +++ +T
Sbjct: 585 DVDLSPPVSPRTLEEEMSQKRRSNRQVKRKKYTEDLDIKITDDEDELDADVDVT 638
>UNIPROTKB|F1NLV5 [details] [associations]
symbol:CHD6 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271 Pfam:PF07533
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
SMART:SM00592 Pfam:PF00385 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
OMA:CKWATME GeneTree:ENSGT00560000077077 EMBL:AADN02019534
EMBL:AADN02019532 EMBL:AADN02019533 IPI:IPI00588365
Ensembl:ENSGALT00000002034 ArrayExpress:F1NLV5 Uniprot:F1NLV5
Length = 2007
Score = 1120 (399.3 bits), Expect = 5.5e-113, Sum P(2) = 5.5e-113
Identities = 288/796 (36%), Positives = 423/796 (53%)
Query: 523 DPVAVNGKVQDESAVSTEDLGERNDKMVV-----EDADVSLRDNEGLTVSEIH------I 571
D ++ + + +ESA S + R+ + V ED D + D++G T++ + +
Sbjct: 11 DLLSPSAQSPEESAESADSQKRRSGRQVKRRKYNEDLDFKVVDDDGETIAVLGAGRTSAL 70
Query: 572 TCESTDKDVDVGKKTSGSVAKRVQEPAVTESAQVKGKAV--SYEFLVKWVGKSNIHNSW- 628
+ + + + ++ +++ + + G EF VK+ S +H W
Sbjct: 71 SASTLAWQAEEPPEDDANIIEKILASRMVQKETHPGGLTFEMEEFYVKYRNFSYLHCKWA 130
Query: 629 -IPESQLKVLAKRKLENYKAKYGTT--VINICDERWKQPQ-----RVISLRSSKD-GTRE 679
+ E + +K++ ++ K + DE P R++ + +KD T E
Sbjct: 131 TLEELEKDPRISQKIKRFRNKQAQMKHIFTEPDEDLFNPDYVEVDRILEVAHTKDPDTGE 190
Query: 680 A----FVKWTGLPYDECTWEKLDEPALEKYSHLTDLFVQFERQTLKKDASEDELPRGKGD 735
VKW LPY+E TWE ++ K L + E + +++ ASE
Sbjct: 191 EVTHYLVKWCSLPYEESTWELEEDVDPVKIKEFEALQIPPEIKHMERPASES-------- 242
Query: 736 CQQSEIVALTEQPEELKGGALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFI 795
Q+ E + E L +QLE +NWL W+ KN ILADEMGLGKT+ + F+
Sbjct: 243 WQKLE-----KSREYKNSNQLREYQLEGMNWLLFNWYNRKNCILADEMGLGKTIQSITFL 297
Query: 796 SSLYCEFKAKLPCLVLVPLSTMPNWLAEFALWAPNLNVVEYHGCAKARAIIRQYEWHASD 855
S ++ P L++ PLST+ NW EF W +N + YHG +R +I+QYE D
Sbjct: 298 SEIFL-MGIHGPFLIIAPLSTITNWEREFRTWT-EMNAIVYHGSQISRQMIQQYEMVYRD 355
Query: 856 PDNLNKKTSSYKFNVLLTTYEMILADSSHLRGVPWEVLVVDEGHRXXXXXXXXXXXXXXX 915
N +KF V++TT+EMILAD L+ + W +V+DE HR
Sbjct: 356 TQG-NPLPGIFKFQVVITTFEMILADCPELKKIQWRCVVIDEAHRLKNRNCKLLEGLKLM 414
Query: 916 XXQHRVLLTGTPLQNNIGEMYNLLNFLQPASFPSLSSFEEKFNDLTTTQKVEELKKLVAP 975
+H+VLLTGTPLQN++ E+++LLNFL+P FPS ++F E+F DL T ++V++L+ ++ P
Sbjct: 415 ALEHKVLLTGTPLQNSVEELFSLLNFLEPQQFPSETAFLEEFGDLKTEEQVKKLQSILKP 474
Query: 976 HMLRRLKKDAMQNIPPKTERMVPVELSSIQAEYYRAMLTKNYQILRNIGKGVAQQSMLNI 1035
MLRRLK D +N+ PK E ++ VEL++IQ +YYRA+L KN+ L KG Q +M N+
Sbjct: 475 MMLRRLKDDVEKNLAPKQETIIEVELTNIQKKYYRAILEKNFSFL---SKGANQHNMPNL 531
Query: 1036 V---MQLRKVCNHPYLIPGTEPD-------SGSVE---FLHEMRIKASAKLTLLHSMLKV 1082
+ M+LRK CNHPYLI G E + S E F + I+A+ KL L+ +L
Sbjct: 532 INTMMELRKCCNHPYLINGAEEKILEDFRKTHSPEAPDFQLQAMIQAAGKLVLIDKLLPK 591
Query: 1083 LYKEGHRVLIFSQMTKLLDILEDYLNIEFGPKTYERVDGSVSVGDRQAAITRF-NQDKSR 1141
L GH+VLIFSQM + LDILEDYL I+ TYER+DG V RQAAI RF D R
Sbjct: 592 LIAGGHKVLIFSQMVRCLDILEDYL-IQ-RRYTYERIDGRVRGNLRQAAIDRFCKPDSDR 649
Query: 1142 FVFLLSTRSCGLGINLATADTVIIYDSDFNPHADIQAMNRAHRIGQSKRLLVYRLVVRAS 1201
FVFLL TR+ GLGINL ADT II+DSD+NP D+QA R HRIGQSK + VYRL+ R S
Sbjct: 650 FVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVKVYRLITRNS 709
Query: 1202 VEERILQLAKKKLMLDQLF---VNKSGSQKEVEDILRWGTEELFNDSPGINGKDMGENNT 1258
E + A KL LD+ +N+ G V+ + + E+L G G M E +
Sbjct: 710 YEREMFDKASLKLGLDKAVLQDINRKGGTNGVQQLSKMEVEDLLRK--GAYGALMDEEDE 767
Query: 1259 SIEEAVRDLEQKHRKR 1274
+ D++Q ++R
Sbjct: 768 GSKFCEEDIDQILQRR 783
Score = 37 (18.1 bits), Expect = 5.5e-113, Sum P(2) = 5.5e-113
Identities = 12/53 (22%), Positives = 29/53 (54%)
Query: 1198 VRASVEERILQLAKKKLMLDQLFVNKSGSQKEVEDILRWGTEELFNDSPGING 1250
V+ E+R + L ++K M + ++S S+++ E+ +E + + G++G
Sbjct: 1523 VKVPPEQRFINLLQEKGMEAKAGPSQSHSEEDEEEEDDDNSEVAADVTEGLSG 1575
>UNIPROTKB|E1BDZ3 [details] [associations]
symbol:CHD9 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271 Pfam:PF07533
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
SMART:SM00592 Pfam:PF00385 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
GeneTree:ENSGT00560000077077 OMA:MWGHQTA EMBL:DAAA02046444
IPI:IPI00705152 Ensembl:ENSBTAT00000002955 Uniprot:E1BDZ3
Length = 2900
Score = 1075 (383.5 bits), Expect = 5.7e-113, Sum P(4) = 5.7e-113
Identities = 285/785 (36%), Positives = 407/785 (51%)
Query: 613 EFLVKWVGKSNIHNSWIPESQLKVLAKR---KLENYKAKYGTTVINICDER-------WK 662
EF VK+ S +H W E QL + KR K++ +K + D +
Sbjct: 716 EFFVKYKNYSYLHCEWATEQQL-LKDKRIQQKIKRFKLRQAQRAHFFADMEEEPFNPDYV 774
Query: 663 QPQRVISLRSSKD-GTREA----FVKWTGLPYDECTWEKLDEPALEKYSHLTDLFVQFER 717
+ RV+ + +D T E VKW LPY++ TWE ++ L K L
Sbjct: 775 EVDRVLEVSFCEDKDTGEPVIYYLVKWCSLPYEDSTWELKEDVDLAKIEEFEQL------ 828
Query: 718 QTLKKDASEDELPRGKGDCQQSEIVALTEQPEELKGG-ALFPHQLEALNWLRKCWHKSKN 776
Q + D + P I +Q + K G L +QLE LNWL W+ +N
Sbjct: 829 QASRPDTRHLDRP-------PPNIWKKIDQSRDYKNGNQLREYQLEGLNWLLFNWYNRRN 881
Query: 777 VILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLSTMPNWLAEFALWAPNLNVVEY 836
ILADEMGLGKT+ + F+ + + P L++ PLST+ NW EF W ++NVV Y
Sbjct: 882 CILADEMGLGKTIQSITFLYEILLT-GIRGPFLIIAPLSTIANWEREFRTWT-DINVVVY 939
Query: 837 HGCAKARAIIRQYEWHASDPDNLNKKTSSYKFNVLLTTYEMILADSSHLRGVPWEVLVVD 896
HG +R +I+QYE + D + +Y+F ++TT+EMIL L + W +++D
Sbjct: 940 HGSLISRQMIQQYEMYFRDSQGRIIR-GAYRFQAIITTFEMILGGCGELNAIEWRCVIID 998
Query: 897 EGHRXXXXXXXXXXXXXXXXXQHRVLLTGTPLQNNIGEMYNLLNFLQPASFPSLSSFEEK 956
E HR +H+VLLTGTPLQN + E+++LL+FL+P FPS S+F ++
Sbjct: 999 EAHRLKNKNCKLLEGLKLMNLEHKVLLTGTPLQNTVEELFSLLHFLEPLRFPSESTFMQE 1058
Query: 957 FNDLTTTQKVEELKKLVAPHMLRRLKKDAMQNIPPKTERMVPVELSSIQAEYYRAMLTKN 1016
F DL T ++V++L+ ++ P MLRRLK+D + + PK E ++ VEL++IQ +YYRA+L KN
Sbjct: 1059 FGDLKTEEQVQKLQAILKPMMLRRLKEDVEKKLAPKEETIIEVELTNIQKKYYRAILEKN 1118
Query: 1017 YQILRNIGKGVAQQSMLNIV---MQLRKVCNHPYLIPGTEP-------DS---GSVEFLH 1063
+ L KG Q ++ N+V M+LRK CNHPYLI G E D+ + +F
Sbjct: 1119 FSFL---SKGAGQTNVPNLVNTMMELRKCCNHPYLIKGAEEKILGEFRDTYNPAASDFHL 1175
Query: 1064 EMRIKASAKLTLLHSMLKVLYKEGHRVLIFSQMTKLLDILEDYLNIEFGPKTYERVDGSV 1123
+ I+++ KL L+ +L + GH+VLIFSQM + LDILEDYL + YER+DG V
Sbjct: 1176 QAMIQSAGKLVLIDKLLPKMKAGGHKVLIFSQMVRCLDILEDYLIHK--RYLYERIDGRV 1233
Query: 1124 SVGDRQAAITRFNQ-DKSRFVFLLSTRSCGLGINLATADTVIIYDSDFNPHADIQAMNRA 1182
RQAAI RF++ D RFVFLL TR+ GLGINL ADT II+DSD+NP D+QA R
Sbjct: 1234 RGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARC 1293
Query: 1183 HRIGQSKRLLVYRLVVRASVEERILQLAKKKLMLDQLFVNK-SGSQKEVEDILRWGTEEL 1241
HRIGQ+K + VYRLV R S E + A KL LD+ + SG + V I + +E+
Sbjct: 1294 HRIGQNKAVKVYRLVTRNSYEREMFDRASLKLGLDKAVLQSMSGRESNVGGIQQLSKKEI 1353
Query: 1242 FND--SPGINGKDMGENNTSIEEAVRDLEQKHRKRGGGLGDVYQDK-CTEGSTKIVWDEN 1298
D G G M E + + D++Q +R + + + T V N
Sbjct: 1354 -EDLLRRGAYGAIMEEEDEGSKFCEEDIDQILLRRTKTITIESEGRGSTFAKASFVASGN 1412
Query: 1299 AIARLLDRSNLQSGSTDLAEGDLENDMLGSVKATEWNEETTEDQAESPVAAVDDASAENS 1358
LD N AE D+ D + + + Q P +A D AE S
Sbjct: 1413 RTDISLDDPNFWQKWAKKAEIDI--DAISGRNSLVIDTPRIRKQTR-PFSATKDELAELS 1469
Query: 1359 ERKEE 1363
E + E
Sbjct: 1470 EPESE 1474
Score = 52 (23.4 bits), Expect = 5.7e-113, Sum P(4) = 5.7e-113
Identities = 42/175 (24%), Positives = 70/175 (40%)
Query: 527 VNGKVQDESAVSTEDLGERNDKMVVEDADVSL-----RDNEGLT-VSEIHITCESTDKDV 580
+ K +D+ + T+ + +K + ++L R NE +S+ + K+
Sbjct: 571 MKSKPKDKESKKTKTCSKLKEKTKIGKLIITLGKKQKRKNESSDEISDAEQMTQHAFKEE 630
Query: 581 DVGKKTSGSVAKRVQEPAVTESAQVKGKAVSYEFLVKWVGKSNIHNSWIP-ESQLKVLAK 639
D K+ S KR + E A+ GK E VK K +++ +P E L++
Sbjct: 631 DSQKRRSNRQIKRKK---YAEDAE--GKQSEEE--VKGSMKIKKNSAPLPGEQPLQLF-- 681
Query: 640 RKLENYKAKYGTTVINICDERWKQPQRVISLRSSKDGTREAFVKWTGLPYDECTW 694
+EN + V I R + + IS D T E FVK+ Y C W
Sbjct: 682 --VENPSEEDAAIVDKILSSRTIKKE--ISSGVMID-TEEFFVKYKNYSYLHCEW 731
Score = 49 (22.3 bits), Expect = 5.7e-113, Sum P(4) = 5.7e-113
Identities = 13/37 (35%), Positives = 16/37 (43%)
Query: 36 EENLVTSESPRNTPSAKRRLKNEINADRSSTKKKGND 72
E N+ SP N PSA K E R +K K +
Sbjct: 543 ERNIPRVMSPENFPSASVEGKEEKKGRRMKSKPKDKE 579
Score = 45 (20.9 bits), Expect = 5.7e-113, Sum P(4) = 5.7e-113
Identities = 17/62 (27%), Positives = 32/62 (51%)
Query: 1310 QSGSTDLAEGDLENDMLGSVKATEWNEETTE--DQAES----PVAAVDDASAENSERKEE 1363
QS + D+ + +N LGS K+ E EE + DQ + P ++++ E SE+ +
Sbjct: 2823 QSNTFDVQKN--KNSDLGSSKSVEVKEEDSRVRDQEDKGGTEPSPLHENSTDEGSEKADA 2880
Query: 1364 NA 1365
++
Sbjct: 2881 SS 2882
Score = 38 (18.4 bits), Expect = 1.7e-111, Sum P(4) = 1.7e-111
Identities = 38/186 (20%), Positives = 68/186 (36%)
Query: 498 KECKVTKECKGENAIDLLREDDKDSDPVAVNGKVQ---DESAVSTEDLGERNDKMVVEDA 554
KE K TK C L+E K + GK Q +ES+ D + E+
Sbjct: 578 KESKKTKTCSK------LKEKTKIGKLIITLGKKQKRKNESSDEISDAEQMTQHAFKEED 631
Query: 555 DVSLRDNEGLTVSEIHITCESTDKDVDV-G----KKTSGSVAKRVQEPAVTESAQVKGKA 609
R N + + E + +V G KK S + E+ + A
Sbjct: 632 SQKRRSNRQIKRKKYAEDAEGKQSEEEVKGSMKIKKNSAPLPGEQPLQLFVENPSEEDAA 691
Query: 610 VSYEFLVKWVGKSNIHNSWIPESQLKVLAKRKLENY-KAKYGTTVINICDERWKQPQRVI 668
+ + L K I + + +++ + K K +Y ++ T + D+R +Q +
Sbjct: 692 IVDKILSSRTIKKEISSGVMIDTE-EFFVKYKNYSYLHCEWATEQQLLKDKRIQQKIKRF 750
Query: 669 SLRSSK 674
LR ++
Sbjct: 751 KLRQAQ 756
Score = 37 (18.1 bits), Expect = 4.0e-112, Sum P(4) = 4.0e-112
Identities = 10/32 (31%), Positives = 17/32 (53%)
Query: 1331 ATEWNEETTEDQAESPVAAVDDASAENSERKE 1362
ATE++E + A + V D S + S+ K+
Sbjct: 2310 ATEYSEPSAPPPAGAAVKEEHDQSTQMSKVKK 2341
Score = 37 (18.1 bits), Expect = 2.1e-111, Sum P(4) = 2.1e-111
Identities = 7/19 (36%), Positives = 13/19 (68%)
Query: 288 SERDRKRKPEVKDEDSQKK 306
S+ ++ + K+EDSQK+
Sbjct: 617 SDAEQMTQHAFKEEDSQKR 635
>UNIPROTKB|Q9HCK8 [details] [associations]
symbol:CHD8 "Chromodomain-helicase-DNA-binding protein 8"
species:9606 "Homo sapiens" [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0001701 "in utero embryonic
development" evidence=IEA] [GO:0043066 "negative regulation of
apoptotic process" evidence=IEA] [GO:0070016 "armadillo repeat
domain binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IMP] [GO:0005634 "nucleus" evidence=IDA] [GO:0060070
"canonical Wnt receptor signaling pathway" evidence=IDA]
[GO:0030178 "negative regulation of Wnt receptor signaling pathway"
evidence=IDA] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=IDA] [GO:0005524 "ATP binding"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0003678 "DNA helicase activity" evidence=IMP] [GO:0035064
"methylated histone residue binding" evidence=IDA] [GO:0045945
"positive regulation of transcription from RNA polymerase III
promoter" evidence=IMP] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IMP]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=IMP] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IDA] [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=IMP] [GO:0043234 "protein complex" evidence=IDA]
[GO:0002039 "p53 binding" evidence=ISS] [GO:0008013 "beta-catenin
binding" evidence=IDA] [GO:0071339 "MLL1 complex" evidence=IDA]
[GO:0042393 "histone binding" evidence=ISS] [GO:0032508 "DNA duplex
unwinding" evidence=IMP] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271
Pfam:PF07533 PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 SMART:SM00592 Pfam:PF00385
GO:GO:0005524 GO:GO:0045892 GO:GO:0043066 GO:GO:0003677
GO:GO:0001701 GO:GO:0045944 GO:GO:0006351 GO:GO:0035064
GO:GO:0008013 GO:GO:0045945 GO:GO:0030178 GO:GO:0060070
InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0003678
GO:GO:0043044 GO:GO:0071339 GO:GO:0002039 InterPro:IPR023780
PROSITE:PS00598 GO:GO:0008094 HOVERGEN:HBG107676 EMBL:CR749315
EMBL:AL834524 EMBL:AL135744 EMBL:AL161747 EMBL:CB043942
EMBL:AB046784 EMBL:AK131077 EMBL:BC011695 EMBL:BC025964
EMBL:BC036920 EMBL:BC063693 EMBL:BC073903 EMBL:BC098452
IPI:IPI00398992 IPI:IPI00719073 RefSeq:NP_001164100.1
RefSeq:NP_065971.2 UniGene:Hs.530698 PDB:2CKA PDB:2DL6 PDBsum:2CKA
PDBsum:2DL6 ProteinModelPortal:Q9HCK8 SMR:Q9HCK8 IntAct:Q9HCK8
STRING:Q9HCK8 PhosphoSite:Q9HCK8 DMDM:226706293 PaxDb:Q9HCK8
PRIDE:Q9HCK8 Ensembl:ENST00000399982 Ensembl:ENST00000430710
Ensembl:ENST00000557364 GeneID:57680 KEGG:hsa:57680 UCSC:uc001war.2
UCSC:uc001was.2 CTD:57680 GeneCards:GC14M021853 HGNC:HGNC:20153
HPA:HPA000849 MIM:610528 neXtProt:NX_Q9HCK8 PharmGKB:PA134957052
KO:K04494 OMA:FLAYMED EvolutionaryTrace:Q9HCK8 GenomeRNAi:57680
NextBio:64494 ArrayExpress:Q9HCK8 Bgee:Q9HCK8 CleanEx:HS_CHD8
Genevestigator:Q9HCK8 GermOnline:ENSG00000100888 Uniprot:Q9HCK8
Length = 2581
Score = 1087 (387.7 bits), Expect = 2.3e-112, Sum P(4) = 2.3e-112
Identities = 315/886 (35%), Positives = 448/886 (50%)
Query: 516 REDDKDSDPVAVNGKVQDESAVSTEDLGER-NDKMVVEDADVS--LRDNEGLT--VSEIH 570
RED++ S + + Q + TEDL + D E+ DV+ ++ L V E
Sbjct: 564 REDEESSIQKRRSNR-QVKRKKYTEDLDIKITDDEEEEEVDVTGPIKPEPILPEPVQEPD 622
Query: 571 -ITCESTDKDVDVGKKTSGSVAKRVQEPAVTESAQVKGKAV-SYEFLVKWVGKSNIHNSW 628
T S V+ + ++ +V + + G+ + EF VK+ S +H W
Sbjct: 623 GETLPSMQFFVENPSEEDAAIVDKVLSMRIVKKELPSGQYTEAEEFFVKYKNYSYLHCEW 682
Query: 629 IPESQLKVLAK--RKLENYKAKYGTT--VINICDERWK----QPQRVISLRSS--KDGTR 678
SQL+ + +KL+ +K K + +E + + R++ S KD
Sbjct: 683 ATISQLEKDKRIHQKLKRFKTKMAQMRHFFHEDEEPFNPDYVEVDRILDESHSIDKDNGE 742
Query: 679 EAF---VKWTGLPYDECTWEKLDEPALEKYSHLTDLFVQFERQTLKKDASEDELPRGKGD 735
VKW LPY++ TWE L E E +F+R + EL R
Sbjct: 743 PVIYYLVKWCSLPYEDSTWE-LKEDVDEGKIR------EFKRI----QSRHPELKRVNRP 791
Query: 736 CQQSEIVALTEQPEELKGGALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFI 795
Q S L E L +QLE +NWL W+ +N ILADEMGLGKT+ + AF+
Sbjct: 792 -QASAWKKLELSHEYKNRNQLREYQLEGVNWLLFNWYNRQNCILADEMGLGKTIQSIAFL 850
Query: 796 SSLYCEFKAKLPCLVLVPLSTMPNWLAEFALWAPNLNVVEYHGCAKARAIIRQYEWHASD 855
+Y P LV+ PLST+ NW EF W +N + YHG +R +I+QYE + D
Sbjct: 851 QEVY-NVGIHGPFLVIAPLSTITNWEREFNTWT-EMNTIVYHGSLASRQMIQQYEMYCKD 908
Query: 856 PDNLNKKTSSYKFNVLLTTYEMILADSSHLRGVPWEVLVVDEGHRXXXXXXXXXXXXXXX 915
+YKF+ L+TT+EMIL+D LR + W +++DE HR
Sbjct: 909 SRG-RLIPGAYKFDALITTFEMILSDCPELREIEWRCVIIDEAHRLKNRNCKLLDSLKHM 967
Query: 916 XXQHRVLLTGTPLQNNIGEMYNLLNFLQPASFPSLSSFEEKFNDLTTTQKVEELKKLVAP 975
+H+VLLTGTPLQN + E+++LL+FL+P+ FPS S F + F DL T ++V++L+ ++ P
Sbjct: 968 DLEHKVLLTGTPLQNTVEELFSLLHFLEPSQFPSESEFLKDFGDLKTEEQVQKLQAILKP 1027
Query: 976 HMLRRLKKDAMQNIPPKTERMVPVELSSIQAEYYRAMLTKNYQILRNIGKGVAQQ-SMLN 1034
MLRRLK+D +N+ PK E ++ VEL++IQ +YYRA+L KN+ L G G ++LN
Sbjct: 1028 MMLRRLKEDVEKNLAPKQETIIEVELTNIQKKYYRAILEKNFSFLSK-GAGHTNMPNLLN 1086
Query: 1035 IVMQLRKVCNHPYLIPGTEPDSGSVEFL-------HEMRIKA---SA-KLTLLHSMLKVL 1083
+M+LRK CNHPYLI G E + EF H+ ++A SA KL L+ +L L
Sbjct: 1087 TMMELRKCCNHPYLINGAE-EKILTEFREACHIIPHDFHLQAMVRSAGKLVLIDKLLPKL 1145
Query: 1084 YKEGHRVLIFSQMTKLLDILEDYLNIEFGPKTYERVDGSVSVGDRQAAITRFNQ-DKSRF 1142
GH+VLIFSQM + LDILEDYL I+ YER+DG V RQAAI RF++ D RF
Sbjct: 1146 KAGGHKVLIFSQMVRCLDILEDYL-IQ-RRYLYERIDGRVRGNLRQAAIDRFSKPDSDRF 1203
Query: 1143 VFLLSTRSCGLGINLATADTVIIYDSDFNPHADIQAMNRAHRIGQSKRLLVYRLVVRASV 1202
VFLL TR+ GLGINL ADT II+DSD+NP D+QA R HRIGQSK + VYRL+ R S
Sbjct: 1204 VFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVKVYRLITRNSY 1263
Query: 1203 EERILQLAKKKLMLDQLFVNK-SGSQKEVEDILRWGTEELFND--SPGINGKDMGENNTS 1259
E + A KL LD+ + SG + I ++ +E+ D G M E++
Sbjct: 1264 EREMFDKASLKLGLDKAVLQSMSGRDGNITGIQQFSKKEI-EDLLRKGAYAAIMEEDDEG 1322
Query: 1260 IEEAVRDLEQKHRKRGGGLGDVYQDK-CTEGSTKIVWDENAIARLLDRSNLQSGSTDLAE 1318
+ D++Q +R + + K T V EN LD N A
Sbjct: 1323 SKFCEEDIDQILLRRTTTITIESEGKGSTFAKASFVASENRTDISLDDPNFWQKWAKKA- 1381
Query: 1319 GDLENDMLGSVKATEWNEETTEDQAESPVAAVDDASAENSERKEEN 1364
DL+ D+L S + Q DD E S+ + E+
Sbjct: 1382 -DLDMDLLNSKNNLVIDTPRVRKQTRHFSTLKDDDLVEFSDLESED 1426
Score = 48 (22.0 bits), Expect = 2.3e-112, Sum P(4) = 2.3e-112
Identities = 38/166 (22%), Positives = 61/166 (36%)
Query: 126 LKPISNLDSISKRARSKIITIKSQSGVKSSGADKVSQIFGNSILARKRSNKGKSVLALGV 185
LKP L S + SK IT+ Q +S G + S L K +G + AL
Sbjct: 269 LKPAVTLTSTPTQGESKRITLVLQQP-QSGGPQGHRHVVLGS-LPGKIVLQGNQLAALTQ 326
Query: 186 KSLEKSLDSSQVDVSCSTK-PENTSAGVPVEGSSSCPNDDDEKQLNASPTDSLADTKFH- 243
+ + V + + P+ VP + SS P S+ +
Sbjct: 327 AKNAQGQPAKVVTIQLQVQQPQQKIQIVP-QPPSSQPQPQQPPSTQPVTLSSVQQAQIMG 385
Query: 244 PAEEVLPHSQVTKSEQNDEVPVEKHEKSSTNGSSGIKFVLAIGASE 289
P + P +++ + V ++ SS SSG+ V + ASE
Sbjct: 386 PGQS--PGQRLSVPVK---VVLQPQAGSSQGASSGLSVVKVLSASE 426
Score = 41 (19.5 bits), Expect = 1.2e-111, Sum P(4) = 1.2e-111
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 256 KSEQNDEVPVEKHEKSSTNGSSGIK 280
K + + EK +KS T+G+S K
Sbjct: 504 KKSAGERLKEEKPKKSKTSGASKTK 528
Score = 41 (19.5 bits), Expect = 2.8e-111, Sum P(3) = 2.8e-111
Identities = 21/94 (22%), Positives = 40/94 (42%)
Query: 1280 DVYQDKCTEGSTKIVWDENAIARLLDRSNLQSGSTDLAEGDLENDML---GSVKATEW-N 1335
D ++K T+ S ++DE + LL + Q G + + ++L +A+EW
Sbjct: 2100 DEKEEKLTDQSRSKLYDEES---LLSLTMSQDGFPNEDGEQMTPELLLLQERQRASEWPK 2156
Query: 1336 EETTEDQAESPVAAVDDASAENSERKEENAVTGI 1369
+ ++ + AV +S R +E GI
Sbjct: 2157 DRVLINRIDLVCQAVLSGKWPSSRRSQEMVTGGI 2190
Score = 40 (19.1 bits), Expect = 1.6e-111, Sum P(4) = 1.6e-111
Identities = 7/21 (33%), Positives = 13/21 (61%)
Query: 360 GLDAQRKDELAEETTDPLDKS 380
GLD+ D + T DP++++
Sbjct: 16 GLDSLTDDSFNQVTQDPIEEA 36
Score = 39 (18.8 bits), Expect = 2.3e-112, Sum P(4) = 2.3e-112
Identities = 9/32 (28%), Positives = 18/32 (56%)
Query: 1307 SNLQSGSTDLAEGDLENDMLGSVKATEWNEET 1338
S+ S STD +E + E + ++ ++EE+
Sbjct: 2088 SSSSSSSTDESEDEKEEKLTDQSRSKLYDEES 2119
Score = 38 (18.4 bits), Expect = 2.5e-111, Sum P(4) = 2.5e-111
Identities = 10/34 (29%), Positives = 16/34 (47%)
Query: 19 KRKRRKLPCGPGLSNGKEENLVTSESPRNTPSAK 52
++KRRK G L K + TS + + +K
Sbjct: 499 EKKRRKKSAGERLKEEKPKKSKTSGASKTKGKSK 532
Score = 37 (18.1 bits), Expect = 2.3e-112, Sum P(4) = 2.3e-112
Identities = 9/30 (30%), Positives = 16/30 (53%)
Query: 1338 TTEDQAESPVAAVDDASAENSERKEENAVT 1367
T + +SPV +SA + +E +AV+
Sbjct: 2204 TPGEYGDSPVPTPRSSSAASMAEEEASAVS 2233
>UNIPROTKB|Q3L8U1 [details] [associations]
symbol:CHD9 "Chromodomain-helicase-DNA-binding protein 9"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0016568 "chromatin modification"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005654
"nucleoplasm" evidence=TAS] [GO:0044255 "cellular lipid metabolic
process" evidence=TAS] [GO:0044281 "small molecule metabolic
process" evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
Reactome:REACT_111217 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271
Pfam:PF07533 PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298
SMART:SM00490 SMART:SM00592 Pfam:PF00385 GO:GO:0005524
GO:GO:0005737 GO:GO:0005654 GO:GO:0006355 GO:GO:0044281
GO:GO:0003677 GO:GO:0044255 GO:GO:0006351 GO:GO:0016568
GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
PROSITE:PS00598 HOVERGEN:HBG081150 EMBL:AY243500 EMBL:DQ333316
EMBL:AY647157 EMBL:AC007906 EMBL:AC079416 EMBL:BC140815
EMBL:AB002306 EMBL:AF150735 EMBL:AK022582 IPI:IPI00383105
IPI:IPI00746795 IPI:IPI00914955 RefSeq:NP_079410.4 UniGene:Hs.59159
UniGene:Hs.622347 ProteinModelPortal:Q3L8U1 SMR:Q3L8U1
IntAct:Q3L8U1 STRING:Q3L8U1 PhosphoSite:Q3L8U1 DMDM:215273951
PaxDb:Q3L8U1 PRIDE:Q3L8U1 Ensembl:ENST00000398510
Ensembl:ENST00000447540 Ensembl:ENST00000564845
Ensembl:ENST00000566029 GeneID:80205 KEGG:hsa:80205 UCSC:uc002egy.3
UCSC:uc002ehb.3 UCSC:uc002ehc.3 CTD:80205 GeneCards:GC16P053041
HGNC:HGNC:25701 neXtProt:NX_Q3L8U1 PharmGKB:PA128394727
InParanoid:Q3L8U1 KO:K14438 OMA:MWGHQTA GenomeRNAi:80205
NextBio:70576 ArrayExpress:Q3L8U1 Bgee:Q3L8U1 CleanEx:HS_CHD9
Genevestigator:Q3L8U1 GermOnline:ENSG00000177200 Uniprot:Q3L8U1
Length = 2897
Score = 1081 (385.6 bits), Expect = 3.0e-112, Sum P(4) = 3.0e-112
Identities = 304/884 (34%), Positives = 448/884 (50%)
Query: 519 DKDSDPVAVNGKVQDESAVSTEDL-GERNDKMVVEDADVSLRDNEGLTVSE--IHITCES 575
D+DS N +++ + ED+ G+++++ V + ++ N E + + E+
Sbjct: 628 DQDSQKRRSNRQIKRKKYA--EDIEGKQSEEEV--KGSMKIKKNSAPLPGEQPLQLFVEN 683
Query: 576 -TDKDVD-VGKKTSGSVAKRVQEPAVTESAQVKGKAVSYEFLVKWVGKSNIHNSWIPESQ 633
+++D V K S K+ P V + EF VK+ S +H W E Q
Sbjct: 684 PSEEDAAIVDKILSSRTVKKEISPGVMIDTE--------EFFVKYKNYSYLHCEWATEEQ 735
Query: 634 LKVLAKR---KLENYKAKYGTTVINICDER-------WKQPQRVISLRSSKD-GTREA-- 680
L + KR K++ +K + D + + RV+ + +D T E
Sbjct: 736 L-LKDKRIQQKIKRFKLRQAQRAHFFADMEEEPFNPDYVEVDRVLEVSFCEDKDTGEPVI 794
Query: 681 --FVKWTGLPYDECTWEKLDEPALEKYSHLTDLFVQFERQTLKKDASEDELPRGKGDCQQ 738
VKW LPY++ TWE ++ L K L Q + D + P
Sbjct: 795 YYLVKWCSLPYEDSTWELKEDVDLAKIEEFEQL------QASRPDTRRLDRP-------P 841
Query: 739 SEIVALTEQPEELKGG-ALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISS 797
S I +Q + K G L +QLE LNWL W+ +N ILADEMGLGKT+ + F+
Sbjct: 842 SNIWKKIDQSRDYKNGNQLREYQLEGLNWLLFNWYNRRNCILADEMGLGKTIQSITFLYE 901
Query: 798 LYCEFKAKLPCLVLVPLSTMPNWLAEFALWAPNLNVVEYHGCAKARAIIRQYEWHASDPD 857
+ + P L++ PLST+ NW EF W ++NVV YHG +R +I+QYE + D
Sbjct: 902 ILLT-GIRGPFLIIAPLSTIANWEREFRTWT-DINVVVYHGSLISRQMIQQYEMYFRDSQ 959
Query: 858 NLNKKTSSYKFNVLLTTYEMILADSSHLRGVPWEVLVVDEGHRXXXXXXXXXXXXXXXXX 917
+ +Y+F ++TT+EMIL L + W +++DE HR
Sbjct: 960 GRIIR-GAYRFQAIITTFEMILGGCGELNAIEWRCVIIDEAHRLKNKNCKLLEGLKLMNL 1018
Query: 918 QHRVLLTGTPLQNNIGEMYNLLNFLQPASFPSLSSFEEKFNDLTTTQKVEELKKLVAPHM 977
+H+VLLTGTPLQN + E+++LL+FL+P FPS S+F ++F DL T ++V++L+ ++ P M
Sbjct: 1019 EHKVLLTGTPLQNTVEELFSLLHFLEPLRFPSESTFMQEFGDLKTEEQVQKLQAILKPMM 1078
Query: 978 LRRLKKDAMQNIPPKTERMVPVELSSIQAEYYRAMLTKNYQILRNIGKGVAQQSMLNIV- 1036
LRRLK+D + + PK E ++ VEL++IQ +YYRA+L KN+ L KG Q ++ N+V
Sbjct: 1079 LRRLKEDVEKKLAPKEETIIEVELTNIQKKYYRAILEKNFSFL---SKGAGQTNVPNLVN 1135
Query: 1037 --MQLRKVCNHPYLIPGTEP-------DS---GSVEFLHEMRIKASAKLTLLHSMLKVLY 1084
M+LRK CNHPYLI G E D+ + +F + I+++ KL L+ +L +
Sbjct: 1136 TMMELRKCCNHPYLIKGAEEKILGEFRDTYNPAASDFHLQAMIQSAGKLVLIDKLLPKMK 1195
Query: 1085 KEGHRVLIFSQMTKLLDILEDYLNIEFGPKTYERVDGSVSVGDRQAAITRFNQ-DKSRFV 1143
GH+VLIFSQM + LDILEDYL + YER+DG V RQAAI RF++ D RFV
Sbjct: 1196 AGGHKVLIFSQMVRCLDILEDYLIHK--RYLYERIDGRVRGNLRQAAIDRFSKPDSDRFV 1253
Query: 1144 FLLSTRSCGLGINLATADTVIIYDSDFNPHADIQAMNRAHRIGQSKRLLVYRLVVRASVE 1203
FLL TR+ GLGINL ADT II+DSD+NP D+QA R HRIGQ+K + VYRLV R S E
Sbjct: 1254 FLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQNKAVKVYRLVTRNSYE 1313
Query: 1204 ERILQLAKKKLMLDQLFVNK-SGSQKEVEDILRWGTEELFND--SPGINGKDMGENNTSI 1260
+ A KL LD+ + SG + V I + +E+ D G G M E +
Sbjct: 1314 REMFDRASLKLGLDKAVLQSMSGRESNVGGIQQLSKKEI-EDLLRRGAYGAIMEEEDEGS 1372
Query: 1261 EEAVRDLEQKHRKRGGGLGDVYQDK-CTEGSTKIVWDENAIARLLDRSNLQSGSTDLAEG 1319
+ D++Q +R + + + T V N LD N AE
Sbjct: 1373 KFCEEDIDQILLRRTKTITIESEGRGSTFAKASFVASGNRTDISLDDPNFWQKWAKKAEI 1432
Query: 1320 DLENDMLGSVKATEWNEETTEDQAESPVAAVDDASAENSERKEE 1363
D+E + + + Q P +A D AE SE + E
Sbjct: 1433 DIE--AISGRNSLVIDTPRIRKQTR-PFSATKDELAELSEAESE 1473
Score = 50 (22.7 bits), Expect = 3.0e-112, Sum P(4) = 3.0e-112
Identities = 13/37 (35%), Positives = 16/37 (43%)
Query: 36 EENLVTSESPRNTPSAKRRLKNEINADRSSTKKKGND 72
E N+ SP N P+A K E R +K K D
Sbjct: 542 ERNIPRVMSPENFPTASVEGKEEKKGRRMKSKPKDKD 578
Score = 43 (20.2 bits), Expect = 3.0e-112, Sum P(4) = 3.0e-112
Identities = 17/62 (27%), Positives = 32/62 (51%)
Query: 1310 QSGSTDLAEGDLENDMLGSVKATEWNEETT--EDQAES----PVAAVDDASAENSERKEE 1363
QS + D+ +N LGS K+ E EE + +DQ + P ++++ E SE+ +
Sbjct: 2821 QSNTFDVQN---KNSDLGSSKSVEVKEEDSRIKDQEDKGGTEPSPLNENSTDEGSEKADA 2877
Query: 1364 NA 1365
++
Sbjct: 2878 SS 2879
Score = 40 (19.1 bits), Expect = 3.0e-112, Sum P(4) = 3.0e-112
Identities = 8/18 (44%), Positives = 14/18 (77%)
Query: 291 DRKRKPE--VKDEDSQKK 306
D ++ P+ +KD+DSQK+
Sbjct: 617 DAEQMPQHTLKDQDSQKR 634
Score = 40 (19.1 bits), Expect = 6.2e-112, Sum P(4) = 6.2e-112
Identities = 13/58 (22%), Positives = 30/58 (51%)
Query: 1311 SGSTDLAEGDL---ENDMLGSVKATEWNEETTEDQAESPVAAV-DDASAENSERKEEN 1364
S S ++ E D + + G + + NE +T++ +E A+ D+++ +SE + +
Sbjct: 2837 SKSVEVKEEDSRIKDQEDKGGTEPSPLNENSTDEGSEKADASSGSDSTSSSSEDSDSS 2894
Score = 39 (18.8 bits), Expect = 1.4e-109, Sum P(3) = 1.4e-109
Identities = 7/17 (41%), Positives = 13/17 (76%)
Query: 289 ERDRKRKPEVKDEDSQK 305
++ R+ K + KD+DS+K
Sbjct: 565 KKGRRMKSKPKDKDSKK 581
>UNIPROTKB|E2RDK8 [details] [associations]
symbol:CHD9 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271 Pfam:PF07533
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
SMART:SM00592 Pfam:PF00385 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
GeneTree:ENSGT00560000077077 OMA:MWGHQTA EMBL:AAEX03001603
EMBL:AAEX03001604 EMBL:AAEX03001605 Ensembl:ENSCAFT00000015413
Uniprot:E2RDK8
Length = 2902
Score = 1082 (385.9 bits), Expect = 3.9e-112, Sum P(4) = 3.9e-112
Identities = 301/883 (34%), Positives = 448/883 (50%)
Query: 519 DKDSDPVAVNGKVQDESAVSTEDLGERNDKMVVEDADVSLRDNEGLTVSE--IHITCES- 575
++DS N +++ + + G+++++ V V ++ N E + + E+
Sbjct: 630 EEDSQKRRSNRQIKRKKYAEDAE-GKQSEEEV--QGSVKIKKNSAPLPGEQPLQLFVENP 686
Query: 576 TDKDVD-VGKKTSGSVAKRVQEPAVTESAQVKGKAVSYEFLVKWVGKSNIHNSWIPESQL 634
+++D V K S + K+ P V + EF VK+ S +H W E QL
Sbjct: 687 SEEDAAIVDKILSSRIVKKEVSPGVMIDTE--------EFFVKYKNYSYLHCEWATEQQL 738
Query: 635 KVLAKR---KLENYKAKYGTTVINICDER-------WKQPQRVISLRSSKD-GTREA--- 680
+ KR K++ +K + + D + + RV+ + +D T E
Sbjct: 739 -LKDKRIQQKIKRFKLRQAQRAHFLADMEEEPFNPDYVEVDRVLEVSFCEDKDTGEPVIY 797
Query: 681 -FVKWTGLPYDECTWEKLDEPALEKYSHLTDLFVQFERQTLKKDASEDELPRGKGDCQQS 739
VKW LPY++ TWE ++ L K L Q + D + P +
Sbjct: 798 YLVKWCSLPYEDSTWELKEDVDLAKIEEFEHL------QASRPDTRHLDRP-------PA 844
Query: 740 EIVALTEQPEELKGG-ALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSL 798
I +Q + K G L +QLE LNWL W+ +N ILADEMGLGKT+ + F+ +
Sbjct: 845 NIWKKIDQSRDYKNGNQLREYQLEGLNWLLFNWYNRRNCILADEMGLGKTIQSITFLYEI 904
Query: 799 YCEFKAKLPCLVLVPLSTMPNWLAEFALWAPNLNVVEYHGCAKARAIIRQYEWHASDPDN 858
+ P L++ PLST+ NW EF W ++NVV YHG +R +I+QYE + D
Sbjct: 905 LLT-GIRGPFLIIAPLSTIANWEREFRTWT-DINVVVYHGSLISRQMIQQYEMYFRDSQG 962
Query: 859 LNKKTSSYKFNVLLTTYEMILADSSHLRGVPWEVLVVDEGHRXXXXXXXXXXXXXXXXXQ 918
+ +Y+F ++TT+EMIL L + W +++DE HR +
Sbjct: 963 RIIR-GAYRFQAIITTFEMILGGCGELNAIEWRCVIIDEAHRLKNKNCKLLEGLKLMNLE 1021
Query: 919 HRVLLTGTPLQNNIGEMYNLLNFLQPASFPSLSSFEEKFNDLTTTQKVEELKKLVAPHML 978
H+VLLTGTPLQN + E+++LL+FL+P FPS S+F ++F DL T ++V++L+ ++ P ML
Sbjct: 1022 HKVLLTGTPLQNTVEELFSLLHFLEPLRFPSESTFMQEFGDLKTEEQVQKLQAILKPMML 1081
Query: 979 RRLKKDAMQNIPPKTERMVPVELSSIQAEYYRAMLTKNYQILRNIGKGVAQQSMLNIV-- 1036
RRLK+D + + PK E ++ VEL++IQ +YYRA+L KN+ L KG Q ++ N+V
Sbjct: 1082 RRLKEDVEKKLAPKEETIIEVELTNIQKKYYRAILEKNFSFL---SKGAGQTNVPNLVNT 1138
Query: 1037 -MQLRKVCNHPYLIPGTEP-------DS---GSVEFLHEMRIKASAKLTLLHSMLKVLYK 1085
M+LRK CNHPYLI G E D+ + +F + I+++ KL L+ +L +
Sbjct: 1139 MMELRKCCNHPYLIKGAEEKILGEFRDTYNPAASDFHLQAMIQSAGKLVLIDKLLPKMKA 1198
Query: 1086 EGHRVLIFSQMTKLLDILEDYLNIEFGPKTYERVDGSVSVGDRQAAITRFNQ-DKSRFVF 1144
GH+VLIFSQM + LDILEDYL + YER+DG V RQAAI RF++ D RFVF
Sbjct: 1199 GGHKVLIFSQMVRCLDILEDYLIHK--RYLYERIDGRVRGNLRQAAIDRFSKPDSDRFVF 1256
Query: 1145 LLSTRSCGLGINLATADTVIIYDSDFNPHADIQAMNRAHRIGQSKRLLVYRLVVRASVEE 1204
LL TR+ GLGINL ADT II+DSD+NP D+QA R HRIGQ+K + VYRLV R S E
Sbjct: 1257 LLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQNKAVKVYRLVTRNSYER 1316
Query: 1205 RILQLAKKKLMLDQLFVNK-SGSQKEVEDILRWGTEELFND--SPGINGKDMGENNTSIE 1261
+ A KL LD+ + SG + V I + +E+ D G G M E + +
Sbjct: 1317 EMFDRASLKLGLDKAVLQSMSGRESNVGGIQQLSKKEI-EDLLRRGAYGAIMEEEDEGSK 1375
Query: 1262 EAVRDLEQKHRKRGGGLGDVYQDK-CTEGSTKIVWDENAIARLLDRSNLQSGSTDLAEGD 1320
D++Q +R + + + T V N LD N AE D
Sbjct: 1376 FCEEDIDQILLRRTKTITIESEGRGSTFAKASFVASGNRTDISLDDPNFWQKWAKKAEID 1435
Query: 1321 LENDMLGSVKATEWNEETTEDQAESPVAAVDDASAENSERKEE 1363
+ D + + + Q P +A D AE SE + E
Sbjct: 1436 I--DAINGRNSLVIDTPRIRKQTR-PFSATKDELAELSEAESE 1475
Score = 49 (22.3 bits), Expect = 3.9e-112, Sum P(4) = 3.9e-112
Identities = 13/37 (35%), Positives = 16/37 (43%)
Query: 36 EENLVTSESPRNTPSAKRRLKNEINADRSSTKKKGND 72
E N+ SP N PSA K E R +K K +
Sbjct: 544 ERNIPRVMSPENFPSASVEGKEEKKGRRMKSKPKDKE 580
Score = 45 (20.9 bits), Expect = 3.9e-112, Sum P(4) = 3.9e-112
Identities = 17/62 (27%), Positives = 33/62 (53%)
Query: 1310 QSGSTDLAEGDLENDMLGSVKATEWNEETTE--DQAES----PVAAVDDASAENSERKEE 1363
QS + D+ + +N+ LGS K+ E EE + DQ + P ++++ E SE+ +
Sbjct: 2825 QSNTFDVQKN--KNNDLGSSKSLEVKEEDSRVRDQEDKGGTEPSPLNENSTDEGSEKADA 2882
Query: 1364 NA 1365
++
Sbjct: 2883 SS 2884
Score = 39 (18.8 bits), Expect = 1.7e-111, Sum P(4) = 1.7e-111
Identities = 9/39 (23%), Positives = 22/39 (56%)
Query: 1327 GSVKATEWNEETTEDQAESPVAAV-DDASAENSERKEEN 1364
G + + NE +T++ +E A+ D+++ +SE + +
Sbjct: 2861 GGTEPSPLNENSTDEGSEKADASSGSDSTSSSSEDSDSS 2899
Score = 37 (18.1 bits), Expect = 3.9e-112, Sum P(4) = 3.9e-112
Identities = 8/18 (44%), Positives = 13/18 (72%)
Query: 291 DRKRKPE--VKDEDSQKK 306
D ++ P+ K+EDSQK+
Sbjct: 619 DTEQMPQHACKEEDSQKR 636
Score = 37 (18.1 bits), Expect = 3.9e-112, Sum P(4) = 3.9e-112
Identities = 13/47 (27%), Positives = 20/47 (42%)
Query: 498 KECKVTKECKGENAIDLLREDDKDSDPVAVNGKVQDESAVSTEDLGE 544
KE K TK C L+E K + GK Q S++++ +
Sbjct: 579 KESKKTKTCSK------LKEKTKIGKLIITLGKKQKRKNESSDEISD 619
>MGI|MGI:1924001 [details] [associations]
symbol:Chd9 "chromodomain helicase DNA binding protein 9"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0016568
"chromatin modification" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0016817 "hydrolase activity, acting on
acid anhydrides" evidence=IEA] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR006576
Pfam:PF00176 Pfam:PF00271 Pfam:PF07533 PROSITE:PS50013
PROSITE:PS51194 SMART:SM00298 SMART:SM00490 SMART:SM00592
MGI:MGI:1924001 Pfam:PF00385 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0006355 GO:GO:0003677 GO:GO:0006351
GO:GO:0016568 GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 PROSITE:PS00598 HOVERGEN:HBG081150
HOGENOM:HOG000246942 GeneTree:ENSGT00560000077077 CTD:80205
KO:K14438 OMA:MWGHQTA EMBL:DQ127229 EMBL:AK034446 EMBL:AK039562
EMBL:AK084000 EMBL:AB093226 EMBL:BC052896 IPI:IPI00229650
IPI:IPI00758139 RefSeq:NP_796198.1 UniGene:Mm.100615
ProteinModelPortal:Q8BYH8 SMR:Q8BYH8 STRING:Q8BYH8
PhosphoSite:Q8BYH8 PaxDb:Q8BYH8 PRIDE:Q8BYH8
Ensembl:ENSMUST00000048665 Ensembl:ENSMUST00000109614 GeneID:109151
KEGG:mmu:109151 UCSC:uc009msf.2 UCSC:uc009msi.2 InParanoid:Q8BYH8
OrthoDB:EOG4548XQ ChiTaRS:CHD9 NextBio:361700 Bgee:Q8BYH8
CleanEx:MM_CHD9 Genevestigator:Q8BYH8 Uniprot:Q8BYH8
Length = 2885
Score = 1090 (388.8 bits), Expect = 5.1e-112, Sum P(3) = 5.1e-112
Identities = 287/785 (36%), Positives = 409/785 (52%)
Query: 613 EFLVKWVGKSNIHNSWIPESQLKVLAKR---KLENYKAKYGTTVINICDER-------WK 662
EF VK+ S +H W E QL + KR K++ +K + + D +
Sbjct: 714 EFFVKYKNYSYLHCEWATEQQL-LKDKRIQQKIKRFKLRQAQRAHFLADMEEEPFNPDYV 772
Query: 663 QPQRVISLRSSKD-GTREA----FVKWTGLPYDECTWEKLDEPALEKYSHLTDLFVQFER 717
+ R++ + +D T E+ VKW LPY++ TWE ++ L K L
Sbjct: 773 EVDRILEVSFCEDKDTGESVIYYLVKWCSLPYEDSTWELKEDVDLAKIEEFEQL------ 826
Query: 718 QTLKKDASEDELPRGKGDCQQSEIVALTEQPEELKGG-ALFPHQLEALNWLRKCWHKSKN 776
Q + D + P S I EQ E K G L +QLE LNWL W+ +N
Sbjct: 827 QASRPDTRHLDRP-------PSNIWKKIEQSREYKNGNQLREYQLEGLNWLLFNWYNRRN 879
Query: 777 VILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLSTMPNWLAEFALWAPNLNVVEY 836
ILADEMGLGKT+ + F+ + + P L++ PLST+ NW EF W ++NVV Y
Sbjct: 880 CILADEMGLGKTIQSITFLYEILLT-GIRGPFLIIAPLSTIANWEREFRTWT-DINVVVY 937
Query: 837 HGCAKARAIIRQYEWHASDPDNLNKKTSSYKFNVLLTTYEMILADSSHLRGVPWEVLVVD 896
HG +R +I+QYE + D + +Y+F ++TT+EMIL L + W +++D
Sbjct: 938 HGSLISRQMIQQYEMYFRDSQGRIIR-GAYRFQAIITTFEMILGGCGELNAIDWRCVIID 996
Query: 897 EGHRXXXXXXXXXXXXXXXXXQHRVLLTGTPLQNNIGEMYNLLNFLQPASFPSLSSFEEK 956
E HR +H+VLLTGTPLQN + E+++LL+FL+P FPS S+F ++
Sbjct: 997 EAHRLKNKNCKLLEGLKLMNLEHKVLLTGTPLQNTVEELFSLLHFLEPLRFPSESTFMQE 1056
Query: 957 FNDLTTTQKVEELKKLVAPHMLRRLKKDAMQNIPPKTERMVPVELSSIQAEYYRAMLTKN 1016
F DL T ++V++L+ ++ P MLRRLK+D + + PK E ++ VEL++IQ +YYRA+L KN
Sbjct: 1057 FGDLKTEEQVQKLQAILKPMMLRRLKEDVEKKLAPKEETIIEVELTNIQKKYYRAILEKN 1116
Query: 1017 YQILRNIGKGVAQQSMLNIV---MQLRKVCNHPYLIPGTEP-------DS---GSVEFLH 1063
+ L KG Q ++ N+V M+LRK CNHPYLI G E D+ + +F
Sbjct: 1117 FSFL---SKGAGQTNVPNLVNTMMELRKCCNHPYLIKGAEEKILGEFRDTYNPSASDFHL 1173
Query: 1064 EMRIKASAKLTLLHSMLKVLYKEGHRVLIFSQMTKLLDILEDYLNIEFGPKTYERVDGSV 1123
+ I+++ KL L+ +L + GH+VLIFSQM + LDILEDYL + YER+DG V
Sbjct: 1174 QAMIQSAGKLVLIDKLLPKMKAGGHKVLIFSQMVRCLDILEDYLIHK--RYLYERIDGRV 1231
Query: 1124 SVGDRQAAITRFNQ-DKSRFVFLLSTRSCGLGINLATADTVIIYDSDFNPHADIQAMNRA 1182
RQAAI RF++ D RFVFLL TR+ GLGINL ADT II+DSD+NP D+QA R
Sbjct: 1232 RGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARC 1291
Query: 1183 HRIGQSKRLLVYRLVVRASVEERILQLAKKKLMLDQLFVNK-SGSQKEVEDILRWGTEEL 1241
HRIGQ+K + VYRLV R S E + A KL LD+ + SG V I + +E+
Sbjct: 1292 HRIGQNKAVKVYRLVTRNSYEREMFDRASLKLGLDKAVLQSMSGRDSNVSGIQQLSKKEI 1351
Query: 1242 FND--SPGINGKDMGENNTSIEEAVRDLEQKHRKRGGGLGDVYQDK-CTEGSTKIVWDEN 1298
D G G M E + + D++Q +R + + + T V N
Sbjct: 1352 -EDLLRRGAYGAIMEEEDEGSKFCEEDIDQILLRRTKTITIESEGRGSTFAKASFVASGN 1410
Query: 1299 AIARLLDRSNLQSGSTDLAEGDLENDMLGSVKATEWNEETTEDQAESPVAAVDDASAENS 1358
LD N AE D+ D + + + Q P +A D AE S
Sbjct: 1411 RTDISLDDPNFWQKWAKKAELDI--DTISGRNSLVIDTPRIRKQTR-PFSATKDELAELS 1467
Query: 1359 ERKEE 1363
E + E
Sbjct: 1468 EAESE 1472
Score = 53 (23.7 bits), Expect = 5.1e-112, Sum P(3) = 5.1e-112
Identities = 14/37 (37%), Positives = 16/37 (43%)
Query: 36 EENLVTSESPRNTPSAKRRLKNEINADRSSTKKKGND 72
E N+ SP N PSA K E R +K K D
Sbjct: 541 ERNIPRVMSPENFPSASVEGKEEKRGRRMKSKPKDRD 577
Score = 46 (21.3 bits), Expect = 2.8e-111, Sum P(3) = 2.8e-111
Identities = 31/136 (22%), Positives = 54/136 (39%)
Query: 227 KQLNASPT-DSLADTKFHPAEEVLPHSQV---TKSEQNDEVPVEKHEKSSTNGSSGIKFV 282
K+ + S T L +T+ E P +V +K E+ + + E ++ G I V
Sbjct: 488 KKSDGSGTYTKLQNTQVRVMSEKKPRKRVESESKQEKANRIISEAIARAKERGERNIPRV 547
Query: 283 LAI---------GASE-RDRKRKPEVKDEDSQKKLRVDXXXXXXXXXXXXXXXIGTLSPG 332
++ G E R R+ K + KD D++K IG L
Sbjct: 548 MSPENFPSASVEGKEEKRGRRMKSKPKDRDNKKP--------KTYSKLKEKTKIGKLIIT 599
Query: 333 TSKLHEKQRTNNDEVS 348
K H+++ ++DE+S
Sbjct: 600 LGKKHKRRNESSDELS 615
Score = 43 (20.2 bits), Expect = 5.1e-112, Sum P(3) = 5.1e-112
Identities = 8/38 (21%), Positives = 19/38 (50%)
Query: 1327 GSVKATEWNEETTEDQAESPVAAVDDASAENSERKEEN 1364
G + + NE +T++ +E + D +S+ + + N
Sbjct: 2846 GGTEPSPLNENSTDEGSERASSGSDSSSSSSEDSDSSN 2883
>MGI|MGI:1915022 [details] [associations]
symbol:Chd8 "chromodomain helicase DNA binding protein 8"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0001701 "in utero embryonic development"
evidence=IMP] [GO:0002039 "p53 binding" evidence=IPI] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=ISO;IDA] [GO:0003678 "DNA helicase activity" evidence=ISO]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005524 "ATP binding" evidence=ISO]
[GO:0005634 "nucleus" evidence=ISO;IDA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0008013
"beta-catenin binding" evidence=ISO] [GO:0008094 "DNA-dependent
ATPase activity" evidence=ISO] [GO:0016055 "Wnt receptor signaling
pathway" evidence=IEA] [GO:0016568 "chromatin modification"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0016817 "hydrolase activity, acting on acid anhydrides"
evidence=IEA] [GO:0030178 "negative regulation of Wnt receptor
signaling pathway" evidence=ISO] [GO:0032508 "DNA duplex unwinding"
evidence=ISO] [GO:0035064 "methylated histone residue binding"
evidence=ISO] [GO:0042393 "histone binding" evidence=IDA]
[GO:0043044 "ATP-dependent chromatin remodeling" evidence=ISO]
[GO:0043066 "negative regulation of apoptotic process"
evidence=IMP;IDA] [GO:0043234 "protein complex" evidence=ISO]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=ISO;IDA] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=ISO] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=ISO] [GO:0045945 "positive regulation of transcription
from RNA polymerase III promoter" evidence=ISO] [GO:0060070
"canonical Wnt receptor signaling pathway" evidence=ISO]
[GO:0070016 "armadillo repeat domain binding" evidence=ISO]
[GO:0071339 "MLL1 complex" evidence=ISO] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR006576
Pfam:PF00176 Pfam:PF00271 Pfam:PF07533 PROSITE:PS00690
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
SMART:SM00592 MGI:MGI:1915022 Pfam:PF00385 GO:GO:0005524
GO:GO:0045892 GO:GO:0043066 GO:GO:0003677 GO:GO:0001701
GO:GO:0045944 GO:GO:0006351 GO:GO:0035064 GO:GO:0008013
GO:GO:0045945 GO:GO:0030178 GO:GO:0060070 InterPro:IPR016197
SUPFAM:SSF54160 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0003678 GO:GO:0043044 GO:GO:0071339
InterPro:IPR023780 PROSITE:PS00598 GO:GO:0008094
HOGENOM:HOG000246942 GeneTree:ENSGT00560000077077
HOVERGEN:HBG107676 OrthoDB:EOG4ZPDTC CTD:57680 KO:K04494
OMA:FLAYMED EMBL:DQ190419 EMBL:AY863219 EMBL:AK129393 EMBL:AK160299
IPI:IPI00858099 IPI:IPI00923681 RefSeq:NP_963999.2
UniGene:Mm.289934 ProteinModelPortal:Q09XV5 SMR:Q09XV5
IntAct:Q09XV5 STRING:Q09XV5 PhosphoSite:Q09XV5 PaxDb:Q09XV5
PRIDE:Q09XV5 Ensembl:ENSMUST00000089752 GeneID:67772 KEGG:mmu:67772
UCSC:uc007tot.1 UCSC:uc007tov.1 InParanoid:Q09XV5 ChiTaRS:CHD8
NextBio:325525 Bgee:Q09XV5 Genevestigator:Q09XV5 Uniprot:Q09XV5
Length = 2582
Score = 1087 (387.7 bits), Expect = 5.1e-112, Sum P(3) = 5.1e-112
Identities = 313/887 (35%), Positives = 449/887 (50%)
Query: 516 REDDKDSDPVAVNGKVQDESAVSTEDLGER-NDKMVVEDADVS--LRDNEGLT--VSEIH 570
RED++ S + + Q + TEDL + D E+ DV+ ++ L V E
Sbjct: 566 REDEESSIQKRRSNR-QVKRKKYTEDLDIKITDDEEEEEVDVTGPIKPEPILPEPVQEPD 624
Query: 571 -ITCESTDKDVDVGKKTSGSVAKRVQEPAVTESAQVKGKAV-SYEFLVKWVGKSNIHNSW 628
T S V+ + ++ +V V + G+ + EF VK+ S +H W
Sbjct: 625 GETLPSMQFFVENPSEEDAAIVDKVLSMRVVKKELPSGQYTEAEEFFVKYKNYSYLHCEW 684
Query: 629 IPESQLKVLAK--RKLENYKAKYGTT--VINICDERWK----QPQRVISLRSS--KDGTR 678
SQL+ + +KL+ +K K + +E + + R++ S KD
Sbjct: 685 ATISQLEKDKRIHQKLKRFKTKMAQMRHFFHEDEEPFNPDYVEVDRILDESHSVDKDNGE 744
Query: 679 EAF---VKWTGLPYDECTWEKLDEPALEKYSHLTDLFVQFERQTLKKDASEDELPRGKGD 735
VKW LPY++ TWE L E E +F+R + EL R
Sbjct: 745 PVIYYLVKWCSLPYEDSTWE-LKEDVDEGKIR------EFKRI----QSRHPELRRVNRP 793
Query: 736 CQQSEIVALTEQPEELKG-GALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAF 794
Q+ E E K L +QLE +NWL W+ +N ILADEMGLGKT+ + AF
Sbjct: 794 --QANAWKKLELSHEYKNRNQLREYQLEGVNWLLFNWYNRQNCILADEMGLGKTIQSIAF 851
Query: 795 ISSLYCEFKAKLPCLVLVPLSTMPNWLAEFALWAPNLNVVEYHGCAKARAIIRQYEWHAS 854
+ +Y P LV+ PLST+ NW EF W +N + YHG +R +I+QYE +
Sbjct: 852 LQEVY-NVGIHGPFLVIAPLSTITNWEREFNTWT-EMNTIVYHGSLASRQMIQQYEMYCK 909
Query: 855 DPDNLNKKTSSYKFNVLLTTYEMILADSSHLRGVPWEVLVVDEGHRXXXXXXXXXXXXXX 914
D +YKF+ L+TT+EMIL+D LR + W +++DE HR
Sbjct: 910 DSRG-RLIPGAYKFDALITTFEMILSDCPELREIEWRCVIIDEAHRLKNRNCKLLDSLKH 968
Query: 915 XXXQHRVLLTGTPLQNNIGEMYNLLNFLQPASFPSLSSFEEKFNDLTTTQKVEELKKLVA 974
+H+VLLTGTPLQN + E+++LL+FL+P+ FPS S F + F DL T ++V++L+ ++
Sbjct: 969 MDLEHKVLLTGTPLQNTVEELFSLLHFLEPSQFPSESEFLKDFGDLKTEEQVQKLQAILK 1028
Query: 975 PHMLRRLKKDAMQNIPPKTERMVPVELSSIQAEYYRAMLTKNYQILRNIGKGVAQQ-SML 1033
P MLRRLK+D +N+ PK E ++ VEL++IQ +YYRA+L KN+ L G G ++L
Sbjct: 1029 PMMLRRLKEDVEKNLAPKQETIIEVELTNIQKKYYRAILEKNFSFLSK-GAGHTNMPNLL 1087
Query: 1034 NIVMQLRKVCNHPYLIPGTEPDSGSVEF----------LH-EMRIKASAKLTLLHSMLKV 1082
N +M+LRK CNHPYLI G E + +EF H + ++++ KL L+ +L
Sbjct: 1088 NTMMELRKCCNHPYLINGAE-EKILMEFREACHIIPQDFHLQAMVRSAGKLVLIDKLLPK 1146
Query: 1083 LYKEGHRVLIFSQMTKLLDILEDYLNIEFGPKTYERVDGSVSVGDRQAAITRFNQ-DKSR 1141
L GH+VLIFSQM + LDILEDYL I+ YER+DG V RQAAI RF++ D R
Sbjct: 1147 LKAGGHKVLIFSQMVRCLDILEDYL-IQ-RRYLYERIDGRVRGNLRQAAIDRFSKPDSDR 1204
Query: 1142 FVFLLSTRSCGLGINLATADTVIIYDSDFNPHADIQAMNRAHRIGQSKRLLVYRLVVRAS 1201
FVFLL TR+ GLGINL ADT II+DSD+NP D+QA R HRIGQSK + VYRL+ R S
Sbjct: 1205 FVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVKVYRLITRNS 1264
Query: 1202 VEERILQLAKKKLMLDQLFVNK-SGSQKEVEDILRWGTEELFND--SPGINGKDMGENNT 1258
E + A KL LD+ + SG + I ++ +E+ D G M E++
Sbjct: 1265 YEREMFDKASLKLGLDKAVLQSMSGRDGNITGIQQFSKKEI-EDLLRKGAYAAIMEEDDE 1323
Query: 1259 SIEEAVRDLEQKHRKRGGGLGDVYQDK-CTEGSTKIVWDENAIARLLDRSNLQSGSTDLA 1317
+ D++Q +R + + K T V EN LD N A
Sbjct: 1324 GSKFCEEDIDQILLRRTTTITIESEGKGSTFAKASFVASENRTDISLDDPNFWQKWAKKA 1383
Query: 1318 EGDLENDMLGSVKATEWNEETTEDQAESPVAAVDDASAENSERKEEN 1364
DL+ D+L S + Q DD E S+ + E+
Sbjct: 1384 --DLDMDLLNSKNNLVIDTPRVRKQTRHFSTLKDDDLVEFSDLESED 1428
Score = 52 (23.4 bits), Expect = 5.1e-112, Sum P(3) = 5.1e-112
Identities = 41/169 (24%), Positives = 68/169 (40%)
Query: 126 LKPISNLDSISKRARSKIITIKSQSGVKSSGADKVSQIFGNSILARKRSNKGKSVLALGV 185
LKP L S + SK IT+ Q +S G + S L K +G + AL
Sbjct: 269 LKPAVTLTSTPTQGESKRITLVLQQP-QSGGPQGHRHVVLGS-LPGKIVLQGNQLAALTQ 326
Query: 186 KSLEKSLDSSQVDVSCSTK-PENTSAGVPVEGSSSCPNDDDEKQLNASPTDSLADTKFHP 244
+ + V + + P+ VP + SS P + +A P +L+ +
Sbjct: 327 AKNAQGQPAKVVTIQLQVQQPQQKIQIVP-QPPSSQPQPQPQPPPSAQPL-TLSSVQ--- 381
Query: 245 AEEVLPHSQVTKSEQNDEVPVE---KHEKSSTNG-SSGIKFVLAIGASE 289
+++ Q Q VP++ + + S+ G SSG+ V + ASE
Sbjct: 382 QAQIMGPGQ--NPGQRLSVPLKMVLQPQAGSSQGASSGLSVVKVLSASE 428
Score = 44 (20.5 bits), Expect = 5.1e-112, Sum P(3) = 5.1e-112
Identities = 25/100 (25%), Positives = 44/100 (44%)
Query: 1280 DVYQDKCTEGSTKIVWD-ENAIARLLD----RSNLQSGSTDLAEGDLENDMLG-SVKATE 1333
D +K E ST V + E+ +L D RS L S ++ G + L SV +
Sbjct: 2004 DAPVEKSPEESTVQVPNLESLTLKLEDEVVARSRLTSQDYEVRVGSSDTAPLSRSVPPVK 2063
Query: 1334 WNEETTEDQAESPVAAVDDASAENSERKEENAVTGIEENE 1373
+E D +E ++ + +S+ +S ++ T E+E
Sbjct: 2064 LEDEDDSD-SELDLSKLSPSSSSSSSSSSSSSSTDESEDE 2102
Score = 41 (19.5 bits), Expect = 1.1e-111, Sum P(3) = 1.1e-111
Identities = 10/30 (33%), Positives = 15/30 (50%)
Query: 1338 TTEDQAESPVAAVDDASAENSERKEENAVT 1367
T + +SPV SA + +E +AVT
Sbjct: 2206 TPGEDGDSPVPTPRSGSAASMAEEEASAVT 2235
Score = 40 (19.1 bits), Expect = 9.4e-111, Sum P(3) = 9.4e-111
Identities = 7/21 (33%), Positives = 13/21 (61%)
Query: 360 GLDAQRKDELAEETTDPLDKS 380
GLD+ D + T DP++++
Sbjct: 16 GLDSLTDDSFNQVTQDPIEEA 36
>UNIPROTKB|B5DE69 [details] [associations]
symbol:chd8 "Chromodomain-helicase-DNA-binding protein 8"
species:8364 "Xenopus (Silurana) tropicalis" [GO:0005634 "nucleus"
evidence=ISS] [GO:0071339 "MLL1 complex" evidence=ISS]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271 Pfam:PF07533
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298
SMART:SM00490 SMART:SM00592 Pfam:PF00385 GO:GO:0005524
GO:GO:0006355 GO:GO:0016055 GO:GO:0003677 GO:GO:0006351
GO:GO:0016568 GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0071339
InterPro:IPR023780 PROSITE:PS00598 HOVERGEN:HBG107676 CTD:57680
KO:K04494 EMBL:BC168549 RefSeq:NP_001131089.2 UniGene:Str.42730
GeneID:100192376 KEGG:xtr:100192376 Xenbase:XB-GENE-966847
Uniprot:B5DE69
Length = 2184
Score = 1084 (386.6 bits), Expect = 1.2e-111, Sum P(3) = 1.2e-111
Identities = 293/828 (35%), Positives = 429/828 (51%)
Query: 533 DESAVSTEDLGERNDKMVVEDADVSLRDNEGLTVSEIHITCESTDKDVDVGKKTSGSVAK 592
DE + G + V+ + L D+E + + + S + V K S +AK
Sbjct: 539 DEDDEEVDVTGPVKTEPVLLPEPMPLPDSEAVPSMQFFVENPSEEDAAIVDKILSMRLAK 598
Query: 593 RVQEPAVTESAQVKGKAVSYEFLVKWVGKSNIHNSWIPESQLKVLAK--RKLENYKAKYG 650
+ E E +V+ E+ VK+ S +H W QL+ + +KL+ +K K
Sbjct: 599 K--ELPTGEYVEVE------EYFVKYKNYSYLHCEWATIEQLERDKRIHQKLKRFKTKM- 649
Query: 651 TTVINIC--DERWKQPQ-----RVI--SLRSSKDGTREA---FVKWTGLPYDECTWEKLD 698
T + + DE P R++ S + KD VKW LPY++ TWE +
Sbjct: 650 TQMQHFLQEDEESFNPDYVEVDRILDESHSTDKDNGEPVVYYLVKWCSLPYEDSTWELKE 709
Query: 699 EPALEKYSHLTDLFVQFERQTLKKDASEDELPRGKGDCQQSEIVALTEQPEELKGGALFP 758
+ K ++ + LK+ A P ++ E+ E G L
Sbjct: 710 DVDDGKIEEFKR--IEARQPNLKRVAR----PAATS-WKKLEL-----SREYQNGNQLRE 757
Query: 759 HQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLSTMP 818
+QLE +NWL W+ +N ILADEMGLGKT+ + F+ +Y + P LV+ PLST+
Sbjct: 758 YQLEGVNWLLFNWYNRQNCILADEMGLGKTIQSITFLQEVY-NVGIRGPFLVIAPLSTIT 816
Query: 819 NWLAEFALWAPNLNVVEYHGCAKARAIIRQYEWHASDPDNLNKKTSSYKFNVLLTTYEMI 878
NW EF W +N + YHG +R +I+QYE + D +YKF+ L+TT+EM+
Sbjct: 817 NWEREFGSWT-QMNTIVYHGSLASRQMIQQYEMYCKDSKG-RLIPGAYKFDALITTFEMV 874
Query: 879 LADSSHLRGVPWEVLVVDEGHRXXXXXXXXXXXXXXXXXQHRVLLTGTPLQNNIGEMYNL 938
L+D LR + W +++DE HR +H+VLLTGTPLQN + E+++L
Sbjct: 875 LSDCPELREIEWRCVIIDEAHRLKNRNCKLLDSLKHMDLEHKVLLTGTPLQNTVEELFSL 934
Query: 939 LNFLQPASFPSLSSFEEKFNDLTTTQKVEELKKLVAPHMLRRLKKDAMQNIPPKTERMVP 998
L+FL+P F S + F + F DL T ++V++L+ ++ P MLRRLK+D +N+ PK E ++
Sbjct: 935 LHFLEPTQFSSEAEFLKDFGDLKTEEQVQKLQAILKPMMLRRLKEDVEKNLAPKQETIIE 994
Query: 999 VELSSIQAEYYRAMLTKNYQILRNIGKGVAQQS---MLNIVMQLRKVCNHPYLIPGTEP- 1054
VEL++IQ +YYRA+L KN+ L KG +Q + +LN +M+LRK CNHPYLI G E
Sbjct: 995 VELTNIQKKYYRAILEKNFSFLT---KGASQSNTPNLLNTMMELRKCCNHPYLITGAEEK 1051
Query: 1055 ------DSGSV---EFLHEMRIKASAKLTLLHSMLKVLYKEGHRVLIFSQMTKLLDILED 1105
++ V +F + +++S KL L+ +L L GH+VLIFSQM + LDILED
Sbjct: 1052 IISEFREATPVVPPDFHVQAMVRSSGKLVLIDKLLPKLRAGGHKVLIFSQMVRCLDILED 1111
Query: 1106 YLNIEFGPKTYERVDGSVSVGDRQAAITRFNQ-DKSRFVFLLSTRSCGLGINLATADTVI 1164
YL I+ YER+DG V RQAAI RF++ D RFVFLL TR+ GLGINL ADT I
Sbjct: 1112 YL-IQ-RRYLYERIDGRVRGNMRQAAIDRFSRPDSDRFVFLLCTRAGGLGINLTAADTCI 1169
Query: 1165 IYDSDFNPHADIQAMNRAHRIGQSKRLLVYRLVVRASVEERILQLAKKKLMLDQLFVNK- 1223
I+DSD+NP D+QA R HRIGQSK + +YRL+ R S E + A KL LD+ +
Sbjct: 1170 IFDSDWNPQNDLQAQARCHRIGQSKAVKIYRLITRNSYEREMFDKASLKLGLDKAVLQSM 1229
Query: 1224 SGSQKEVEDILRWGTEELFND--SPGINGKDMGENNTSIEEAVRDLEQKHRKRGGGLGDV 1281
SG + ++ T++ D G M E++ + D++Q +R +
Sbjct: 1230 SGRDNHLSGPIQQFTKKEIEDLLRKGAYAAIMDEDDEGSKFCEEDIDQILLRRTTTITIE 1289
Query: 1282 YQDK-CTEGSTKIVWDENAIARLLDRSNLQSGSTDLAEGDLENDMLGS 1328
+ K T V EN LD N A DL+ D+L S
Sbjct: 1290 SEGKGSTFSKASFVASENRTDISLDDPNFWQKWAKKA--DLDLDLLSS 1335
Score = 51 (23.0 bits), Expect = 1.2e-111, Sum P(3) = 1.2e-111
Identities = 25/123 (20%), Positives = 52/123 (42%)
Query: 343 NNDEVSASLCEVDVGTKGLDAQRKDELAEETTDPLDKSDKAGVHVNEIPLCKDIVPFELQ 402
N DE+ + E D G++ ++K E ++ + D K K + K P
Sbjct: 424 NEDELPSVNPEDDDGSRRKRKKKKGETSDRSKDEKPKKVKGSGSLRSRSKGK---P---S 477
Query: 403 QVDRVLGCRVKGDDTS--SSCHISATATDDRHSDDFLVSENHNKILEENLACDTDLDAEV 460
+ ++G + K + +S S I A+ +D + N+ ++ + DLD ++
Sbjct: 478 TITPIVGKKRKRNPSSDNSDAEIMASQASPAEDEDSVQKRRSNRQVKRKKYTE-DLDIKI 536
Query: 461 TEN 463
T++
Sbjct: 537 TDD 539
Score = 40 (19.1 bits), Expect = 1.8e-110, Sum P(3) = 1.8e-110
Identities = 39/188 (20%), Positives = 66/188 (35%)
Query: 135 ISKRARSKIITIKSQSGVKSSGADKVSQIFGNSILARKRSNKGKSVLALGVKSLEKSLDS 194
+ +A S T + S VK A +V+ + + + + + G+S K EK+
Sbjct: 344 LQPQAGSSQGTAQGLSVVKVLNASEVANLTASQTVVKTSTGGGESRKLDSQKKQEKANRI 403
Query: 195 -SQVDVSCSTKPENTSAGVPVEGS--SSCPNDDD-----EKQLNASPTDSLADTKFHPAE 246
++ + E V E S P DDD K+ +D D K +
Sbjct: 404 VAEAIARARARGEQNIPRVLNEDELPSVNPEDDDGSRRKRKKKKGETSDRSKDEKPKKVK 463
Query: 247 EVLPHSQVTKSEQNDEVPV----EKHEKSSTNGSSGIKFVLAIGASERDRKRKPEVKDED 302
+K + + P+ K SS N + I A A + D +K +
Sbjct: 464 GSGSLRSRSKGKPSTITPIVGKKRKRNPSSDNSDAEIMASQASPAEDEDSVQKRRSNRQV 523
Query: 303 SQKKLRVD 310
+KK D
Sbjct: 524 KRKKYTED 531
Score = 39 (18.8 bits), Expect = 1.2e-111, Sum P(3) = 1.2e-111
Identities = 10/33 (30%), Positives = 16/33 (48%)
Query: 117 PKCTQKNDQLKPISNLDSISKRARSKIITIKSQ 149
P ++ N +KP L S ++ K IT+ Q
Sbjct: 205 PGSSESNTGIKPAITLTSAPQQGDPKRITLVLQ 237
>UNIPROTKB|E2QUR1 [details] [associations]
symbol:CHD8 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271 Pfam:PF07533
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
SMART:SM00592 Pfam:PF00385 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
GeneTree:ENSGT00560000077077 EMBL:AAEX03009852
Ensembl:ENSCAFT00000009072 Uniprot:E2QUR1
Length = 2200
Score = 1087 (387.7 bits), Expect = 4.3e-111, Sum P(3) = 4.3e-111
Identities = 315/886 (35%), Positives = 448/886 (50%)
Query: 516 REDDKDSDPVAVNGKVQDESAVSTEDLGER-NDKMVVEDADVS--LRDNEGLT--VSEIH 570
RED++ S + + Q + TEDL + D E+ DV+ ++ L V E
Sbjct: 181 REDEESSIQKRRSNR-QVKRKKYTEDLDIKITDDEEEEEVDVTGPIKTEPILPEPVQEPD 239
Query: 571 -ITCESTDKDVDVGKKTSGSVAKRVQEPAVTESAQVKGKAV-SYEFLVKWVGKSNIHNSW 628
T S V+ + ++ +V + + G+ + EF VK+ S +H W
Sbjct: 240 GETLPSMQFFVENPSEEDAAIVDKVLSMRIVKKELPSGQYTEAEEFFVKYKNYSYLHCEW 299
Query: 629 IPESQLKVLAK--RKLENYKAKYGTT--VINICDERWK----QPQRVISLRSS--KDGTR 678
SQL+ + +KL+ +K K + +E + + R++ S KD
Sbjct: 300 ATISQLEKDKRIHQKLKRFKTKMAQMRHFFHEDEEPFNPDYVEVDRILDESHSIDKDNGE 359
Query: 679 EAF---VKWTGLPYDECTWEKLDEPALEKYSHLTDLFVQFERQTLKKDASEDELPRGKGD 735
VKW LPY++ TWE L E E +F+R + EL R
Sbjct: 360 PVIYYLVKWCSLPYEDSTWE-LKEDVDEGKIR------EFKRI----QSRHPELKRVNRP 408
Query: 736 CQQSEIVALTEQPEELKGGALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFI 795
Q S L E L +QLE +NWL W+ +N ILADEMGLGKT+ + AF+
Sbjct: 409 -QASAWKKLELSHEYKNRNQLREYQLEGVNWLLFNWYNRQNCILADEMGLGKTIQSIAFL 467
Query: 796 SSLYCEFKAKLPCLVLVPLSTMPNWLAEFALWAPNLNVVEYHGCAKARAIIRQYEWHASD 855
+Y P LV+ PLST+ NW EF W +N + YHG +R +I+QYE + D
Sbjct: 468 QEVY-NVGIHGPFLVIAPLSTITNWEREFNTWT-EMNTIVYHGSLASRQMIQQYEMYCKD 525
Query: 856 PDNLNKKTSSYKFNVLLTTYEMILADSSHLRGVPWEVLVVDEGHRXXXXXXXXXXXXXXX 915
+YKF+ L+TT+EMIL+D LR + W +++DE HR
Sbjct: 526 SRG-RLIPGAYKFDALITTFEMILSDCPELREIEWRCVIIDEAHRLKNRNCKLLDSLKHM 584
Query: 916 XXQHRVLLTGTPLQNNIGEMYNLLNFLQPASFPSLSSFEEKFNDLTTTQKVEELKKLVAP 975
+H+VLLTGTPLQN + E+++LL+FL+P+ FPS S F + F DL T ++V++L+ ++ P
Sbjct: 585 DLEHKVLLTGTPLQNTVEELFSLLHFLEPSQFPSESEFLKDFGDLKTEEQVQKLQAILKP 644
Query: 976 HMLRRLKKDAMQNIPPKTERMVPVELSSIQAEYYRAMLTKNYQILRNIGKGVAQQ-SMLN 1034
MLRRLK+D +N+ PK E ++ VEL++IQ +YYRA+L KN+ L G G ++LN
Sbjct: 645 MMLRRLKEDVEKNLAPKQETIIEVELTNIQKKYYRAILEKNFSFLSK-GAGHTNMPNLLN 703
Query: 1035 IVMQLRKVCNHPYLIPGTEPDSGSVEFL-------HEMRIKA---SA-KLTLLHSMLKVL 1083
+M+LRK CNHPYLI G E + EF H+ ++A SA KL L+ +L L
Sbjct: 704 TMMELRKCCNHPYLINGAE-EKILTEFREACHIIPHDFHLQAMVRSAGKLVLIDKLLPKL 762
Query: 1084 YKEGHRVLIFSQMTKLLDILEDYLNIEFGPKTYERVDGSVSVGDRQAAITRFNQ-DKSRF 1142
GH+VLIFSQM + LDILEDYL I+ YER+DG V RQAAI RF++ D RF
Sbjct: 763 KAGGHKVLIFSQMVRCLDILEDYL-IQ-RRYLYERIDGRVRGNLRQAAIDRFSKPDSDRF 820
Query: 1143 VFLLSTRSCGLGINLATADTVIIYDSDFNPHADIQAMNRAHRIGQSKRLLVYRLVVRASV 1202
VFLL TR+ GLGINL ADT II+DSD+NP D+QA R HRIGQSK + VYRL+ R S
Sbjct: 821 VFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVKVYRLITRNSY 880
Query: 1203 EERILQLAKKKLMLDQLFVNK-SGSQKEVEDILRWGTEELFND--SPGINGKDMGENNTS 1259
E + A KL LD+ + SG + I ++ +E+ D G M E++
Sbjct: 881 EREMFDKASLKLGLDKAVLQSMSGRDGNITGIQQFSKKEI-EDLLRKGAYAAIMEEDDEG 939
Query: 1260 IEEAVRDLEQKHRKRGGGLGDVYQDK-CTEGSTKIVWDENAIARLLDRSNLQSGSTDLAE 1318
+ D++Q +R + + K T V EN LD N A
Sbjct: 940 SKFCEEDIDQILLRRTTTITIESEGKGSTFAKASFVASENRTDISLDDPNFWQKWAKKA- 998
Query: 1319 GDLENDMLGSVKATEWNEETTEDQAESPVAAVDDASAENSERKEEN 1364
DL+ D+L S + Q DD E S+ + E+
Sbjct: 999 -DLDMDLLNSKNNLVIDTPRVRKQTRHFSTLKDDDLVEFSDLESED 1043
Score = 42 (19.8 bits), Expect = 4.3e-111, Sum P(3) = 4.3e-111
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 256 KSEQNDEVPVEKHEKSSTNGSSGIK 280
K + + EK +KS T+G+S K
Sbjct: 121 KKSSGERLKEEKPKKSKTSGTSKTK 145
Score = 41 (19.5 bits), Expect = 5.5e-111, Sum P(3) = 5.5e-111
Identities = 10/28 (35%), Positives = 15/28 (53%)
Query: 262 EVPVEKHEKSSTNGSSGIKFVLAIGASE 289
+V ++ SS SSG+ V + ASE
Sbjct: 16 KVVLQPQAGSSQGASSGLSVVKVLSASE 43
Score = 40 (19.1 bits), Expect = 4.3e-111, Sum P(3) = 4.3e-111
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 1338 TTEDQAESPVAAVDDASAENSERKEENAVT 1367
T + +SPV +SA + +E +AVT
Sbjct: 1822 TPGEYGDSPVPTPRSSSAASMAEEEVSAVT 1851
Score = 37 (18.1 bits), Expect = 1.5e-110, Sum P(3) = 1.5e-110
Identities = 10/34 (29%), Positives = 16/34 (47%)
Query: 19 KRKRRKLPCGPGLSNGKEENLVTSESPRNTPSAK 52
++KRRK G L K + TS + + +K
Sbjct: 116 EKKRRKKSSGERLKEEKPKKSKTSGTSKTKGKSK 149
>RGD|620696 [details] [associations]
symbol:Chd8 "chromodomain helicase DNA binding protein 8"
species:10116 "Rattus norvegicus" [GO:0001701 "in utero embryonic
development" evidence=IEA;ISO] [GO:0002039 "p53 binding"
evidence=ISO;ISS] [GO:0003677 "DNA binding" evidence=ISO;ISS]
[GO:0003678 "DNA helicase activity" evidence=ISO;ISS] [GO:0005515
"protein binding" evidence=IPI] [GO:0005524 "ATP binding"
evidence=ISO;ISS] [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0008013 "beta-catenin binding" evidence=ISO;IDA] [GO:0008094
"DNA-dependent ATPase activity" evidence=ISO;ISS] [GO:0030178
"negative regulation of Wnt receptor signaling pathway"
evidence=ISO;IDA] [GO:0032508 "DNA duplex unwinding" evidence=ISO]
[GO:0035064 "methylated histone residue binding" evidence=ISO;ISS]
[GO:0042393 "histone binding" evidence=ISO;ISS] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=ISO;ISS] [GO:0043066
"negative regulation of apoptotic process" evidence=ISO;ISS]
[GO:0043234 "protein complex" evidence=ISO;IDA] [GO:0045892
"negative regulation of transcription, DNA-dependent"
evidence=ISO;IDA] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=ISO;ISS] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=ISO;ISS] [GO:0045945 "positive regulation of
transcription from RNA polymerase III promoter" evidence=ISO;ISS]
[GO:0060070 "canonical Wnt receptor signaling pathway"
evidence=ISO;IDA] [GO:0070016 "armadillo repeat domain binding"
evidence=IPI] [GO:0071339 "MLL1 complex" evidence=ISO;ISS]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271 Pfam:PF07533
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298
SMART:SM00490 SMART:SM00592 Pfam:PF00385 RGD:620696 GO:GO:0005524
GO:GO:0045892 GO:GO:0043066 GO:GO:0003677 GO:GO:0001701
GO:GO:0045944 GO:GO:0006351 GO:GO:0035064 GO:GO:0008013
GO:GO:0045945 GO:GO:0030178 GO:GO:0060070 InterPro:IPR016197
SUPFAM:SSF54160 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0003678 GO:GO:0043044 GO:GO:0071339
GO:GO:0002039 EMBL:CH474040 InterPro:IPR023780 PROSITE:PS00598
GO:GO:0008094 HOGENOM:HOG000246942 GeneTree:ENSGT00560000077077
HOVERGEN:HBG107676 OrthoDB:EOG4ZPDTC CTD:57680 KO:K04494
EMBL:AF169825 IPI:IPI00201110 IPI:IPI00923717 RefSeq:NP_075222.2
UniGene:Rn.98337 STRING:Q9JIX5 PhosphoSite:Q9JIX5 PRIDE:Q9JIX5
Ensembl:ENSRNOT00000022593 GeneID:65027 KEGG:rno:65027
UCSC:RGD:620696 NextBio:613802 Genevestigator:Q9JIX5 Uniprot:Q9JIX5
Length = 2581
Score = 1087 (387.7 bits), Expect = 9.4e-111, Sum P(3) = 9.4e-111
Identities = 313/887 (35%), Positives = 449/887 (50%)
Query: 516 REDDKDSDPVAVNGKVQDESAVSTEDLGER-NDKMVVEDADVS--LRDNEGLT--VSEIH 570
RED++ S + + Q + TEDL + D E+ DV+ ++ L V E
Sbjct: 564 REDEESSIQKRRSNR-QVKRKKYTEDLDIKITDDEEEEEVDVTGPIKPEPILPEPVPEPD 622
Query: 571 -ITCESTDKDVDVGKKTSGSVAKRVQEPAVTESAQVKGKAV-SYEFLVKWVGKSNIHNSW 628
T S V+ + ++ +V V + G+ + EF VK+ S +H W
Sbjct: 623 GETLPSMQFFVENPSEEDAAIVDKVLSMRVVKKELPSGQYTEAEEFFVKYKNYSYLHCEW 682
Query: 629 IPESQLKVLAK--RKLENYKAKYGTT--VINICDERWK----QPQRVISLRSS--KDGTR 678
SQL+ + +KL+ +K K + +E + + R++ S KD
Sbjct: 683 ATISQLEKDKRIHQKLKRFKTKMAQMRHFFHEDEEPFNPDYVEVDRILDESHSVDKDNGE 742
Query: 679 EAF---VKWTGLPYDECTWEKLDEPALEKYSHLTDLFVQFERQTLKKDASEDELPRGKGD 735
VKW LPY++ TWE L E E +F+R + EL R
Sbjct: 743 PVIYYLVKWCSLPYEDSTWE-LKEDVDEGKIR------EFKRI----QSRHPELKRVNRP 791
Query: 736 CQQSEIVALTEQPEELKG-GALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAF 794
Q+ E E K L +QLE +NWL W+ +N ILADEMGLGKT+ + AF
Sbjct: 792 --QANAWKKLELSHEYKNRNQLREYQLEGVNWLLFNWYNRQNCILADEMGLGKTIQSIAF 849
Query: 795 ISSLYCEFKAKLPCLVLVPLSTMPNWLAEFALWAPNLNVVEYHGCAKARAIIRQYEWHAS 854
+ +Y P LV+ PLST+ NW EF W +N + YHG +R +I+QYE +
Sbjct: 850 LQEVY-NVGIHGPFLVIAPLSTITNWEREFNTWT-EMNTIVYHGSLASRQMIQQYEMYCK 907
Query: 855 DPDNLNKKTSSYKFNVLLTTYEMILADSSHLRGVPWEVLVVDEGHRXXXXXXXXXXXXXX 914
D +YKF+ L+TT+EMIL+D LR + W +++DE HR
Sbjct: 908 DSRG-RLIPGAYKFDALITTFEMILSDCPELREIEWRCVIIDEAHRLKNRNCKLLDSLKH 966
Query: 915 XXXQHRVLLTGTPLQNNIGEMYNLLNFLQPASFPSLSSFEEKFNDLTTTQKVEELKKLVA 974
+H+VLLTGTPLQN + E+++LL+FL+P+ FPS S F + F DL T ++V++L+ ++
Sbjct: 967 MDLEHKVLLTGTPLQNTVEELFSLLHFLEPSQFPSESEFLKDFGDLKTEEQVQKLQAILK 1026
Query: 975 PHMLRRLKKDAMQNIPPKTERMVPVELSSIQAEYYRAMLTKNYQILRNIGKGVAQQ-SML 1033
P MLRRLK+D +N+ PK E ++ VEL++IQ +YYRA+L KN+ L G G ++L
Sbjct: 1027 PMMLRRLKEDVEKNLAPKQETIIEVELTNIQKKYYRAILEKNFSFLSK-GAGHTNMPNLL 1085
Query: 1034 NIVMQLRKVCNHPYLIPGTEPDSGSVEF----------LH-EMRIKASAKLTLLHSMLKV 1082
N +M+LRK CNHPYLI G E + +EF H + ++++ KL L+ +L
Sbjct: 1086 NTMMELRKCCNHPYLINGAE-EKILMEFREACHIIPQDFHLQAMVRSAGKLVLIDKLLPK 1144
Query: 1083 LYKEGHRVLIFSQMTKLLDILEDYLNIEFGPKTYERVDGSVSVGDRQAAITRFNQ-DKSR 1141
L GH+VLIFSQM + LDILEDYL I+ YER+DG V RQAAI RF++ D R
Sbjct: 1145 LKAGGHKVLIFSQMVRCLDILEDYL-IQ-RRYLYERIDGRVRGNLRQAAIDRFSKPDSDR 1202
Query: 1142 FVFLLSTRSCGLGINLATADTVIIYDSDFNPHADIQAMNRAHRIGQSKRLLVYRLVVRAS 1201
FVFLL TR+ GLGINL ADT II+DSD+NP D+QA R HRIGQSK + VYRL+ R S
Sbjct: 1203 FVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVKVYRLITRNS 1262
Query: 1202 VEERILQLAKKKLMLDQLFVNK-SGSQKEVEDILRWGTEELFND--SPGINGKDMGENNT 1258
E + A KL LD+ + SG + I ++ +E+ D G M E++
Sbjct: 1263 YEREMFDKASLKLGLDKAVLQSMSGRDGNITGIQQFSKKEI-EDLLRKGAYAAIMEEDDE 1321
Query: 1259 SIEEAVRDLEQKHRKRGGGLGDVYQDK-CTEGSTKIVWDENAIARLLDRSNLQSGSTDLA 1317
+ D++Q +R + + K T V EN LD N A
Sbjct: 1322 GSKFCEEDIDQILLRRTTTITIESEGKGSTFAKASFVASENRTDISLDDPNFWQKWAKKA 1381
Query: 1318 EGDLENDMLGSVKATEWNEETTEDQAESPVAAVDDASAENSERKEEN 1364
DL+ D+L S + Q DD E S+ + E+
Sbjct: 1382 --DLDMDLLNSKNNLVIDTPRVRKQTRHFSTLKDDDLVEFSDLESED 1426
Score = 44 (20.5 bits), Expect = 9.4e-111, Sum P(3) = 9.4e-111
Identities = 37/166 (22%), Positives = 61/166 (36%)
Query: 126 LKPISNLDSISKRARSKIITIKSQSGVKSSGADKVSQIFGNSILARKRSNKGKSVLALGV 185
LKP L S + SK IT+ Q +S G + S L K +G + AL
Sbjct: 269 LKPAVTLTSTPAQGESKRITLVLQQP-QSGGPQGHRHVVLGS-LPGKIVLQGNQLAALTQ 326
Query: 186 KSLEKSLDSSQVDVSCSTK-PENTSAGVPVEGSSSCPNDDDEKQLNASPTDSLADTKFH- 243
+ + V + + P+ VP + SS P S+ +
Sbjct: 327 AKSAQGQPAKVVTIQLQVQQPQQKIQIVP-QPPSSQPQPQPPPSAQPLTLSSVQQAQIMG 385
Query: 244 PAEEVLPHSQVTKSEQNDEVPVEKHEKSSTNGSSGIKFVLAIGASE 289
P + P +++ + + ++ SS SSG+ V + ASE
Sbjct: 386 PGQN--PGQRLSVPLK---MVLQPQAGSSQGASSGLSVVKVLSASE 426
Score = 40 (19.1 bits), Expect = 9.4e-111, Sum P(3) = 9.4e-111
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 1338 TTEDQAESPVAAVDDASAENSERKEENAVT 1367
T + +SPV +SA + +E +AVT
Sbjct: 2204 TPGEYGDSPVPTPRSSSAASMVEEEASAVT 2233
Score = 40 (19.1 bits), Expect = 2.5e-110, Sum P(3) = 2.5e-110
Identities = 7/21 (33%), Positives = 13/21 (61%)
Query: 360 GLDAQRKDELAEETTDPLDKS 380
GLD+ D + T DP++++
Sbjct: 16 GLDSLTDDSFNQVTQDPIEEA 36
>UNIPROTKB|E1BS48 [details] [associations]
symbol:CHD9 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271 Pfam:PF07533
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
SMART:SM00592 Pfam:PF00385 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
GeneTree:ENSGT00560000077077 OMA:MWGHQTA EMBL:AADN02038292
EMBL:AADN02038293 EMBL:AADN02038294 EMBL:AADN02038295
EMBL:AADN02038296 EMBL:AADN02038297 EMBL:AADN02038298
IPI:IPI00579055 Ensembl:ENSGALT00000005902 Uniprot:E1BS48
Length = 2614
Score = 1068 (381.0 bits), Expect = 1.1e-110, Sum P(3) = 1.1e-110
Identities = 299/880 (33%), Positives = 451/880 (51%)
Query: 519 DKDSDPVAVNGKVQDESAVSTEDLGERNDKMVVEDADVSLRDNEGLTVSE-IHITCES-T 576
D+DS N +V+ + + E G+++++ A + +++ L + + + E+ +
Sbjct: 625 DEDSQKRRSNRQVKRKK-YAEEGEGKQSEEEAKASAKIK-KNSAPLPAEQPLQLFVENPS 682
Query: 577 DKDVDVGKKTSGSVAKRVQEPAVTESAQVKGKAVSYEFLVKWVGKSNIHNSWIPESQLKV 636
++D + K S R+ + ++ V+ + EF VK+ S +H W E QL +
Sbjct: 683 EEDAAIVDKILSS---RIIKKEISAGMTVETE----EFFVKYKNYSYLHCEWATEQQL-L 734
Query: 637 LAKR---KLENYKAKYGTTVINICDER-------WKQPQRV--ISLRSSKD-GTREAF-- 681
KR K++ +K + D + + RV +SL KD G +
Sbjct: 735 KDKRIQQKIKRFKLRQAQRAHFFADMEEEPFNPDYVEVDRVLEVSLCEDKDTGEPVVYYL 794
Query: 682 VKWTGLPYDECTWEKLDEPALEKYSHLTDLFVQFERQTLKKDASEDELPRGKGDCQQSEI 741
VKW LPY++ TWE ++ K L Q + D+ + P +I
Sbjct: 795 VKWCSLPYEDSTWELKEDVDQAKIEEFEQL------QASRPDSRRLDRPPPNS---WKKI 845
Query: 742 VALTEQPEELKGG-ALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYC 800
E E K G L +QLE LNWL W+ +N ILADEMGLGKT+ + F+ +
Sbjct: 846 ----EHSREYKNGNQLREYQLEGLNWLLFNWYNRRNCILADEMGLGKTIQSITFLYEILL 901
Query: 801 EFKAKLPCLVLVPLSTMPNWLAEFALWAPNLNVVEYHGCAKARAIIRQYEWHASDPDNLN 860
+ P L++ PLST+ NW EF W +LNVV YHG +R +I+QYE + D
Sbjct: 902 S-GIRGPFLIIAPLSTITNWEREFRTWT-DLNVVVYHGSMISRQMIQQYEMYFRDSQGRI 959
Query: 861 KKTSSYKFNVLLTTYEMILADSSHLRGVPWEVLVVDEGHRXXXXXXXXXXXXXXXXXQHR 920
+ +Y+F ++TT+EMIL L + W +++DE HR +H+
Sbjct: 960 VR-GTYRFQAIITTFEMILGGCPELNAIEWRCVIIDEAHRLKNRNCKLLEGLKLMNLEHK 1018
Query: 921 VLLTGTPLQNNIGEMYNLLNFLQPASFPSLSSFEEKFNDLTTTQKVEELKKLVAPHMLRR 980
VLLTGTPLQN + E+++LL+FL+P FP+ S+F ++F DL T ++V++L+ ++ P MLRR
Sbjct: 1019 VLLTGTPLQNTVEELFSLLHFLEPLRFPAESTFMQEFGDLKTEEQVQKLQAILKPMMLRR 1078
Query: 981 LKKDAMQNIPPKTERMVPVELSSIQAEYYRAMLTKNYQILRNIGKGVAQ-QSMLNIVMQL 1039
LK+D + + PK E ++ VEL++IQ +YYRA+L KN+ L G G A +++N +M+L
Sbjct: 1079 LKEDVEKKLAPKEETIIEVELTNIQKKYYRAILEKNFAFLSK-GAGQANVPNLVNTMMEL 1137
Query: 1040 RKVCNHPYLIPGTEP----------DSGSVEFLHEMRIKASAKLTLLHSMLKVLYKEGHR 1089
RK CNHPYLI G E + + +F + I+++ KL L+ +L + GH+
Sbjct: 1138 RKCCNHPYLIKGAEEKILGEFKETYNPTAPDFHLQAMIQSAGKLVLIDKLLPKMKAGGHK 1197
Query: 1090 VLIFSQMTKLLDILEDYLNIEFGPKTYERVDGSVSVGDRQAAITRFNQ-DKSRFVFLLST 1148
VLIFSQM + LDILEDYL + YER+DG V RQAAI RF++ D RFVFLL T
Sbjct: 1198 VLIFSQMVRCLDILEDYLIHK--RYLYERIDGRVRGNLRQAAIDRFSKPDSDRFVFLLCT 1255
Query: 1149 RSCGLGINLATADTVIIYDSDFNPHADIQ-AMNRAHRIGQSKRLLVYRLVVRASVEERIL 1207
R+ GLGINL ADT II+DSD+NP D+Q A R HRIGQ+K + VYRL+ R S E +
Sbjct: 1256 RAGGLGINLTAADTCIIFDSDWNPQNDLQKAQARCHRIGQNKAVKVYRLITRNSYEREMF 1315
Query: 1208 QLAKKKLMLDQLFVNK-SGSQKEVEDILRWGTEELFND--SPGINGKDMGENNTSIEEAV 1264
A KL LD+ + SG + V I + +E+ D G G M E + +
Sbjct: 1316 DRASLKLGLDKAVLQSMSGRENSVGGIQQLSKKEI-EDLLRRGAYGAIMDEEDEGSKFCE 1374
Query: 1265 RDLEQKHRKRGGGLGDVYQDK-CTEGSTKIVWDENAIARLLDRSNLQSGSTDLAEGDLEN 1323
D++Q ++R + + + T V N LD N AE D+
Sbjct: 1375 EDIDQILQRRTKTITIESEGRGSTFAKASFVASGNRTDISLDDPNFWQKWAKKAEIDI-- 1432
Query: 1324 DMLGSVKATEWNEETTEDQAESPVAAVDDASAENSERKEE 1363
D + + + Q P +A D AE SE + E
Sbjct: 1433 DAISGRNSLVIDTPRIRKQTR-PFSATKDELAELSEVESE 1471
Score = 61 (26.5 bits), Expect = 1.1e-110, Sum P(3) = 1.1e-110
Identities = 44/186 (23%), Positives = 75/186 (40%)
Query: 104 PPLKRIPNGKWQCPKCTQKNDQLKPISN------LDSISKRARSKIITIKSQSGVKSSGA 157
PP + +G K +N Q++ +S DS SK+ ++ I ++ + K G
Sbjct: 480 PPSSKKTDGSGSHTK--SQNTQVRAMSEKKQRKKADSESKQEKANRIISEAIAKAKERGE 537
Query: 158 DKVSQIFG--N--SILAR-KRSNKGKSVLALGVKSLEKSLDSSQVDVSCSTKP-ENTSAG 211
+ ++ N S+ A K KG+ V KS K +S + S+K E T G
Sbjct: 538 RNIPRVMSPENFPSVSAEGKEEKKGRKV-----KSKPKDKESKKPKTGSSSKTKEKTKIG 592
Query: 212 VPVEGSSSCPNDDDEKQLNASPTDSLADTKFHPAEEVLPHSQVTKSEQNDEVPVEKHEKS 271
+ +K+ N S +D L+D K P ++ L K N +V +K+ +
Sbjct: 593 KLIITLGK-----KQKRKNES-SDELSDAKQTP-QKSLKDEDSQKRRSNRQVKRKKYAEE 645
Query: 272 STNGSS 277
S
Sbjct: 646 GEGKQS 651
Score = 48 (22.0 bits), Expect = 2.6e-109, Sum P(3) = 2.6e-109
Identities = 22/118 (18%), Positives = 47/118 (39%)
Query: 255 TKSEQNDEVPVEKHEKSSTNGSSGIKFVLA------IGASERDRKRKPEVKDEDSQKKLR 308
+K E+ + + E K+ G I V++ + A ++ K+ +VK + K+ +
Sbjct: 516 SKQEKANRIISEAIAKAKERGERNIPRVMSPENFPSVSAEGKEEKKGRKVKSKPKDKESK 575
Query: 309 VDXXXXXXXXXXXXXXXIGTLSPGTSKLHEKQRTNNDEVSASLCEVDVGTKGLDAQRK 366
IG L K +++ ++DE+S + K D+Q++
Sbjct: 576 KPKTGSSSKTKEKTK--IGKLIITLGKKQKRKNESSDELSDAKQTPQKSLKDEDSQKR 631
Score = 43 (20.2 bits), Expect = 8.6e-109, Sum P(3) = 8.6e-109
Identities = 11/37 (29%), Positives = 15/37 (40%)
Query: 36 EENLVTSESPRNTPSAKRRLKNEINADRSSTKKKGND 72
E N+ SP N PS K E + +K K +
Sbjct: 537 ERNIPRVMSPENFPSVSAEGKEEKKGRKVKSKPKDKE 573
Score = 42 (19.8 bits), Expect = 1.1e-110, Sum P(3) = 1.1e-110
Identities = 14/61 (22%), Positives = 25/61 (40%)
Query: 1301 ARLLDRSNLQSGSTDLAEGDLENDMLGSVKATEWNEETTEDQAESPVAAVDDASAENSER 1360
+RL D T + + + D S + + EET P++ + A +N+E
Sbjct: 2030 SRLPDAKVNTPEDTKVKSENRKEDAQSSEEESMSTEETQTVMKSEPLSPKNGAPVQNTEH 2089
Query: 1361 K 1361
K
Sbjct: 2090 K 2090
>DICTYBASE|DDB_G0293012 [details] [associations]
symbol:DDB_G0293012 "CHR group protein" species:44689
"Dictyostelium discoideum" [GO:0005634 "nucleus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=ISS] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=ISS] InterPro:IPR000330 InterPro:IPR000626
InterPro:IPR000953 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00213 SMART:SM00298
SMART:SM00490 dictyBase:DDB_G0293012 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0006357 GO:GO:0004003
InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
EMBL:AAFI02000199 InterPro:IPR022617 Pfam:PF11976
RefSeq:XP_629261.1 ProteinModelPortal:Q54CF8
EnsemblProtists:DDB0220643 GeneID:8628981 KEGG:ddi:DDB_G0293012
InParanoid:Q54CF8 OMA:IMINEDI Uniprot:Q54CF8
Length = 3071
Score = 1027 (366.6 bits), Expect = 1.2e-110, Sum P(3) = 1.2e-110
Identities = 260/765 (33%), Positives = 414/765 (54%)
Query: 497 TKECKVTKECKGENAIDLLREDDKDSDPVAVNGKVQD-----ESAVSTEDLGERNDKMVV 551
T+ T +N + KD + +N K ++ E+ + +D + +
Sbjct: 626 TESTTTTTTTTTKNTESTSTDKVKDEEMTDINSKTKETIIKTETTIKEQDGPKETVAVAT 685
Query: 552 EDADVSLRDNEGLTVSEIHITCESTD---KDVDVGKK-TSGSVAKRVQ--EPAVTESAQV 605
+++D++ + V E T +T+ + +V + TS + A +P +TE +
Sbjct: 686 TKTTTTVKDDDKMKVDESSTTKTATEVSNEATEVSNEATSAAAATTTTPPQPPITEEIRF 745
Query: 606 KG--KAVSYEFLVKWVGKSNIHNSWIPESQLKVLAKRKLEN-----YKAKYGTTVINICD 658
K SY V+WV + I + +K+L + + N K + N
Sbjct: 746 LALFKNKSYRS-VRWVTEKVIEKEKESPTLIKLL--KTVRNTPPPAIKNESEANPFNYFS 802
Query: 659 ERWKQPQRVISLRSSKDGTREAFVKWTGLPYDECTWEKLDEPALEKYSHLTDLFVQFERQ 718
+++++ + +K G + K T + C W+ L + L + ++
Sbjct: 803 PDCTVIEKILAKKETKAGKSK---KMT--TFYLCKWKTLPHEK-STWEDENILITEEDQA 856
Query: 719 TLKK-DASEDELPRGKGDCQQ-SEIVALTEQ--PEELKGGALFPHQLEALNWLRKCWHKS 774
+K+ +A++ L + K + +++ + P+ +L Q+E WL CW+
Sbjct: 857 AIKQFNANQLLLDQPKKYVNRPTKLPIFNNELVPKFQDNLSLKEFQVEGFLWLSYCWYHC 916
Query: 775 KNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLSTMPNWLAEFALWAPNLNVV 834
++ +LADEMGLGKT+ + AF+ L K P LV+ PLST+ NW E W + +
Sbjct: 917 RSSLLADEMGLGKTIQSIAFLQYLSQSVGIKGPFLVVAPLSTLGNWHKEILKWT-KMKTL 975
Query: 835 EYHGCAKARAIIRQYEWHASDPDNLNKKTSSYKFNVLLTTYEMILADSSHLRGVPWEVLV 894
++G + R I +YE+ D +Y F VLLTTYE I++D S VPW L+
Sbjct: 976 VFYGSQETRGFISKYEFKHKD---------TYLFEVLLTTYETIMSDHSSFVRVPWRALI 1026
Query: 895 VDEGHRXXXXXXXXXXXXXXXXXQHRVLLTGTPLQNNIGEMYNLLNFLQPASFPSLSSFE 954
+DEGHR +H ++LTGTPLQN++ E++ +LNFL P F S F
Sbjct: 1027 LDEGHRIKNDKSKVLSKLKSIKTEHSIILTGTPLQNDMKELWTMLNFLDPDKFNSCQEFL 1086
Query: 955 EKFNDLTTTQKVEELKKLVAPHMLRRLKKDAMQNIPPKTERMVPVELSSIQAEYYRAMLT 1014
++++DL +V +L +L++P++LRR+K+D +IP K E ++ VELSS Q YYRA+L
Sbjct: 1087 DEYSDLKEESQVSKLHQLLSPYLLRRMKEDVELSIPIKEETVIQVELSSTQKTYYRAILE 1146
Query: 1015 KNYQIL-RNIGKGVAQQSMLNIVMQLRKVCNHPYLIPGTEPD-------SGSVEFLHEMR 1066
+N + L R I + + NI++Q+RKVCNHP+LIPG E +G E L E+
Sbjct: 1147 RNREFLSRGIKQKTNLPKLSNIMIQIRKVCNHPFLIPGAEESIVKQEKIAGDEE-LGELL 1205
Query: 1067 IKASAKLTLLHSMLKVLYKEGHRVLIFSQMTKLLDILEDYLNIEFGPKTYERVDGSVSVG 1126
+K+S+KL L+ +L+ L EGH+VLIFSQM + L+ILEDYL ++ TYER+DGS+
Sbjct: 1206 VKSSSKLVLVDKLLQRLKAEGHQVLIFSQMVESLNILEDYL--QYREYTYERLDGSIKSE 1263
Query: 1127 DRQAAITRFNQDK--SRFVFLLSTRSCGLGINLATADTVIIYDSDFNPHADIQAMNRAHR 1184
RQA+I RF QDK +RFVFLLSTR+ G+GINL TADTVI++DSD+NP +D+QA R HR
Sbjct: 1264 VRQASIDRF-QDKGANRFVFLLSTRAGGVGINLTTADTVILFDSDWNPQSDLQAQARCHR 1322
Query: 1185 IGQSKRLLVYRLVVRASVEERILQLAKKKLMLDQLFVNKSGSQKE 1229
IGQ+ + VYRL+ R + EE + + A KKL+LD + ++ + +K+
Sbjct: 1323 IGQTNNVKVYRLITRNTYEEYLFECATKKLLLDHIVLSTNKDKKQ 1367
Score = 77 (32.2 bits), Expect = 1.2e-110, Sum P(3) = 1.2e-110
Identities = 29/141 (20%), Positives = 63/141 (44%)
Query: 1234 LRWGTEE-LFNDSPGINGKDMGENNTSIEEAVRDLEQKHRKRGGGLGDVYQDKCTEGSTK 1292
+RW EE ND + E +T + + D + K G ++ DK E K
Sbjct: 1861 IRWNIEEPKSNDKETQIKVEEKEKSTESKSSSNDEKDVCEKVEKGEKEISSDKVDENKEK 1920
Query: 1293 IVWDENAIARLLDRSNLQSGSTDLAEGDLENDMLGSVKATEWNEETTEDQAESPVAAVDD 1352
+ + N + ++S S D +E +N+ + ++ +E++ +D+ DD
Sbjct: 1921 V--ENNEKVNVDEKSKDNEKSND-SEKSKDNEKSKDDEKSKDDEKSKDDEKSQ-----DD 1972
Query: 1353 ASAENSERKEENAVTGIEENE 1373
+++ E+ +++ + +EEN+
Sbjct: 1973 EKSKDDEKSKDDEKSKLEENQ 1993
Score = 71 (30.1 bits), Expect = 1.2e-110, Sum P(3) = 1.2e-110
Identities = 39/166 (23%), Positives = 66/166 (39%)
Query: 104 PPLKRIPNGKWQCPKCTQKNDQLKPISNLDSISKRARSKIITIKSQSGVKSSGADKVSQI 163
PP NGK + T N D S + I T KS+ +K G+ K +
Sbjct: 369 PPTSNSLNGK---RRRTPLNKIESESEESDESSDEYETPITTSKSKVPIKKGGSKKAAAS 425
Query: 164 FGNSILARKRSNKGKSVLALGVKSLEKSLD--SSQVDVSCSTKPENTSAGVPVEGSSSCP 221
+ L + +SN S + + +K L S+V + K +N+S+ E
Sbjct: 426 PTTTKLDKSKSNISSSSSSSNSNNKKKQLGVTKSRVPLKGKGKIKNSSS----EDEDD-- 479
Query: 222 NDDDEKQLNASPTDSLADTKFHPAEEVLPHSQVTKSEQN--DEVPV 265
+DDD + N +D A + +EE + SE + D++ +
Sbjct: 480 DDDDSDEQNFDESDDFASE--NSSEEQASDDEYYMSEDDPLDQIEI 523
Score = 68 (29.0 bits), Expect = 2.5e-110, Sum P(3) = 2.5e-110
Identities = 29/147 (19%), Positives = 62/147 (42%)
Query: 168 ILARKRSNKGKSVLALGVKSLEKSLDSSQVDVSCSTKPENTS-AGVPVEGSSSCPNDDDE 226
I + SN + + KS ++ +++ S +P S +G+ SS+ N+++
Sbjct: 86 ISSANSSNNNNNNTTTPANNNGKSNKNNNNNIATSKRPPTRSKSGIINNSSSNNNNNNNN 145
Query: 227 KQLNASPTDSLADTKFHPAEEVLPHSQ---VTKSEQNDEVPVEKHEKSSTNGSSGIKFVL 283
N + + T+ E L S +K NDE P+ + + + +K
Sbjct: 146 NNNNNNEEEEEGKTEELQDEYTLESSDDDDTSKKSNNDEKPLPQPPVNKNKPNKKLKNDN 205
Query: 284 AIGASERDRKRKPEVKDEDSQKKLRVD 310
G +E D + + E ++E+ +++ D
Sbjct: 206 E-GENEEDEEEEEEEEEEEEEEEEEED 231
Score = 60 (26.2 bits), Expect = 1.8e-109, Sum P(3) = 1.8e-109
Identities = 82/460 (17%), Positives = 161/460 (35%)
Query: 123 NDQLKPISNLDSISKRARSKIITIKSQSGVKSSGADKVSQIFGNSILARKRSNKGKSVLA 182
N+ P +N +K + I T K SG S N+ +N +
Sbjct: 97 NNTTTPANNNGKSNKNNNNNIATSKRPPTRSKSGIINNSSSNNNNNNNNNNNNNNEEEEE 156
Query: 183 LGVKSL--EKSLDSSQVDVSCSTKPENTSAGVPVEGSSSCPNDDDEKQLNASPTDSLADT 240
+ L E +L+SS D S K N +P + N ++K N + ++ D
Sbjct: 157 GKTEELQDEYTLESSDDD-DTSKKSNNDEKPLPQPPVNK--NKPNKKLKNDNEGENEEDE 213
Query: 241 KFHPAEEVLPHSQVTKSEQNDEVPVEKHEKSSTNGSSGIKFVLAIGASERDRKRKPEVKD 300
+ EE + + E+ +++ +E + + F G S D K KP
Sbjct: 214 EEEEEEE----EEEEEEEEEEDIYIE-NVRDVIKSDDDQSF----GDSSADEK-KPN--- 260
Query: 301 EDSQKKLRVDXXXXXXXXXXXXXXXIGTLSPGTSKLHEKQRTNNDEVSASL---CEVDVG 357
+S K + GT + T RT + +A + E +
Sbjct: 261 -NSVAKKAPNNTMTIKATRSTSRTRGGTTAQSTPPPPPPSRTRGGKKAAHIKNNIESEES 319
Query: 358 TKGLDAQRKDELAEETTDPLDKSDKAGVH-VNEIPLCKDIVPFELQQVDRVLGCRVKGDD 416
++ + + ++E E S + GV +N K Q + G
Sbjct: 320 SEEEEEEEEEEDEEVQASSSSSSSRRGVRQINATTAKKPPASKSKSQPSPPTSNSLNGKR 379
Query: 417 TSSSCHI--SATATDDRHSDDFL--VSENHNKILEENLACDTDLDAEVTENLAELSPNVI 472
+ + S + D SD++ ++ + +K+ + + T L + N+
Sbjct: 380 RRTPLNKIESESEESDESSDEYETPITTSKSKVPIKKGGSKKAAASPTTTKLDKSKSNIS 439
Query: 473 RSSDEECMKN---DIGVDRIQVYRRSVTKECKVTKECKGENAIDLLREDDKDSDPVAVNG 529
SS N +GV + +V + K + E + ++ D ++ +SD A
Sbjct: 440 SSSSSSNSNNKKKQLGVTKSRVPLKGKGKIKNSSSEDEDDDDDDSDEQNFDESDDFASEN 499
Query: 530 KVQDESAVSTEDLGERNDKMVVEDADVSLRDNEGLTVSEI 569
+E A E +D + + ++ + D++ L V ++
Sbjct: 500 S-SEEQASDDEYYMSEDDPL--DQIEIPIADDDELRVQKV 536
Score = 56 (24.8 bits), Expect = 4.7e-109, Sum P(3) = 4.7e-109
Identities = 23/91 (25%), Positives = 40/91 (43%)
Query: 190 KSLDSSQVDVSCSTKPENTSAGVPVEGSSSCPNDDDEKQLNASPTDSLADTKFHPAEEVL 249
K+ ++ S +TKP++ S P+ S+S KQ SP S A++ +
Sbjct: 46 KNTSTNSTTASTTTKPKSQSDSPPL--SNSLMTRSRSKQ---SPQISSANSSNNNNNNTT 100
Query: 250 -PHSQVTKSEQNDEVPVEKHEKSSTNGSSGI 279
P + KS +N+ + ++ T SGI
Sbjct: 101 TPANNNGKSNKNNNNNIATSKRPPTRSKSGI 131
Score = 42 (19.8 bits), Expect = 1.4e-107, Sum P(3) = 1.4e-107
Identities = 13/65 (20%), Positives = 27/65 (41%)
Query: 217 SSSCPNDDDEKQLNASPTDSLADTKFHPAEEV----LPHSQVTKSEQNDEVPVEKHEKSS 272
S++ N+++ N S + A T P + L +S +T+S + S+
Sbjct: 34 SNNNNNNNNNNNKNTSTNSTTASTTTKPKSQSDSPPLSNSLMTRSRSKQSPQISSANSSN 93
Query: 273 TNGSS 277
N ++
Sbjct: 94 NNNNN 98
Score = 41 (19.5 bits), Expect = 1.8e-107, Sum P(3) = 1.8e-107
Identities = 23/121 (19%), Positives = 49/121 (40%)
Query: 121 QKNDQLKPISNLDSISKRARSKIITIKSQSGVKSSGADKVSQIFGNSILARKRSNKGKSV 180
++ D+ S+ S S+R +I ++ S + S NS+ ++R +
Sbjct: 328 EEEDEEVQASSSSSSSRRGVRQINATTAKKPPASKSKSQPSPPTSNSLNGKRRRTPLNKI 387
Query: 181 LALGVKSLEKSLDSSQVDVSCS-TKPENTSAGVPVEGSSSCPNDDDEKQLNASPTDSLAD 239
+ +S E S D + ++ S +K G +S D+ + N S + S ++
Sbjct: 388 ESESEESDESS-DEYETPITTSKSKVPIKKGGSKKAAASPTTTKLDKSKSNISSSSSSSN 446
Query: 240 T 240
+
Sbjct: 447 S 447
Score = 41 (19.5 bits), Expect = 7.5e-107, Sum P(3) = 7.5e-107
Identities = 26/135 (19%), Positives = 53/135 (39%)
Query: 1241 LFNDSPGINGKDMGENNTSIEEAVRDLEQKHRKRGGGLGDVYQDKCTEGSTKIVWDENAI 1300
+ ND+ +N +++S + +++ H KR ++ C + T I W+
Sbjct: 1813 ILNDASKLNAAAASASSSSDKPTPPPIKRFHVKRTFNANGLF---CAQQLT-IRWNIEE- 1867
Query: 1301 ARLLDRSNLQSGSTDLAEGDLENDMLGSVKATEWNEETTEDQAESPVAAVDDASAENSER 1360
+SN + + E + + S + E E + E +++ D EN E+
Sbjct: 1868 ----PKSNDKETQIKVEEKEKSTESKSSSNDEKDVCEKVE-KGEKEISS--DKVDENKEK 1920
Query: 1361 KEENAVTGIEENEWD 1375
E N ++E D
Sbjct: 1921 VENNEKVNVDEKSKD 1935
Score = 38 (18.4 bits), Expect = 1.6e-106, Sum P(3) = 1.6e-106
Identities = 13/42 (30%), Positives = 19/42 (45%)
Query: 1284 DKCTEGSTKIVWDENAIARLLDRSNLQSGSTDLAEGDLENDM 1325
DK E ST I +DE ++ S + +E D+ DM
Sbjct: 1457 DKILERSTTIQFDEKN-SKPSSLSGFSKATFASSETDMNVDM 1497
>ZFIN|ZDB-GENE-030131-497 [details] [associations]
symbol:chd9 "chromodomain helicase DNA binding
protein 9" species:7955 "Danio rerio" [GO:0016817 "hydrolase
activity, acting on acid anhydrides" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271
Pfam:PF07533 PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298
SMART:SM00490 SMART:SM00592 Pfam:PF00385 ZFIN:ZDB-GENE-030131-497
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0004386
InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR023780 GeneTree:ENSGT00560000077077
EMBL:CR318585 EMBL:CU464124 EMBL:FP015866 IPI:IPI00972236
Ensembl:ENSDART00000027807 Bgee:E7F7W5 Uniprot:E7F7W5
Length = 2948
Score = 1080 (385.2 bits), Expect = 2.2e-110, Sum P(3) = 2.2e-110
Identities = 270/746 (36%), Positives = 396/746 (53%)
Query: 504 KECKGENAIDLLREDDKDSDPVAVNGKVQDESAVSTEDLGERNDKMVVEDADVSLRDNEG 563
K+ K ++ + L +DD+ P + K D S + +R K +D + + D E
Sbjct: 660 KKRKKTDSSEELSDDDR---PTRRSSKDDDSKRRSNRKV-KR--KKYEDDGEARISDEEM 713
Query: 564 LTVSEIHITCESTDKDVD--VGKKTS--GSVAKRVQEPAVTESAQVKGKAVSYE-FLVKW 618
+ + + + V V T +V ++ V + G V E + VK+
Sbjct: 714 KVIVKAKKSSSNKKPAVQLFVENPTEEDAAVVDKIMASRVVKKEVSPGVLVEIEEYFVKY 773
Query: 619 VGKSNIHNSWIPESQLKV--LAKRKLENYKAKYGTTVINICD-ER------WKQPQRV-- 667
S +H W E QL+ ++K++ +K K D E + + RV
Sbjct: 774 KNYSYLHCEWATEQQLEKDKRIQQKIKRFKIKQAQKAHFFADIEEDPFNPDYVEVDRVLE 833
Query: 668 ISLRSSKDGTREA---FVKWTGLPYDECTWEKLDEPALEKYSHLTDLFVQFERQTLKKDA 724
+S KD VKW LPY++ TWE +++ K L Q K
Sbjct: 834 VSYCEDKDSGEPVVYYLVKWCSLPYEDSTWELMEDVDQTKIEEFKKL------QAAKPHT 887
Query: 725 SEDELPRGKGDCQQSEIVALTEQPEELKGGALFPHQLEALNWLRKCWHKSKNVILADEMG 784
+ E P S L + + +L +QLE +NWL W+ +N ILADEMG
Sbjct: 888 NRMERPPA------SHWKKLEKSRKYCNENSLRDYQLEGVNWLLFNWYNRRNCILADEMG 941
Query: 785 LGKTVSACAFISSLYCEFKAKLPCLVLVPLSTMPNWLAEFALWAPNLNVVEYHGCAKARA 844
LGKT+ + F+ +Y K P L++ PLST+ NW EF W +LNV+ YHG +R
Sbjct: 942 LGKTIQSITFLEEIY-RTGIKGPFLIIAPLSTIANWEREFRTWT-HLNVIVYHGSVVSRQ 999
Query: 845 IIRQYEWHASDPDNLNKKTSSYKFNVLLTTYEMILADSSHLRGVPWEVLVVDEGHRXXXX 904
+++QYE + D + +Y+F ++TT+EMIL L + W +++DE HR
Sbjct: 1000 MLQQYEMYCRDSQGRVIR-GAYRFQAVITTFEMILGGCPELNAIDWRCVIIDEAHRLKNK 1058
Query: 905 XXXXXXXXXXXXXQHRVLLTGTPLQNNIGEMYNLLNFLQPASFPSLSSFEEKFNDLTTTQ 964
+H+VLLTGTPLQN + E+++LL+FL+P FPS ++F ++F DL T +
Sbjct: 1059 NCKLLEGFKLMSLEHKVLLTGTPLQNTVEELFSLLHFLEPTRFPSENTFMQEFGDLKTEE 1118
Query: 965 KVEELKKLVAPHMLRRLKKDAMQNIPPKTERMVPVELSSIQAEYYRAMLTKNYQILRNIG 1024
+V++L+ ++ P MLRRLK+D + + PK E ++ VEL++IQ +YYRA+L KN+ L G
Sbjct: 1119 QVQKLQAILKPMMLRRLKEDVEKKLAPKEETIIEVELTNIQKKYYRAILEKNFSFLAK-G 1177
Query: 1025 KGVAQ-QSMLNIVMQLRKVCNHPYLIPGTEP----------DSGSVEFLHEMRIKASAKL 1073
G A ++LN +M+LRK CNHPYLI G E +V+F + I+++ KL
Sbjct: 1178 AGQANVPNLLNTMMELRKCCNHPYLIKGAEEKIMEDFKEVYSPAAVDFHLQAMIQSAGKL 1237
Query: 1074 TLLHSMLKVLYKEGHRVLIFSQMTKLLDILEDYLNIEFGPKTYERVDGSVSVGDRQAAIT 1133
L+ +L + GH+VLIFSQM + LDILEDYL I+ YER+DG V RQAAI
Sbjct: 1238 VLIDKLLPKMKAGGHKVLIFSQMVRCLDILEDYL-IQ-RRYLYERIDGRVRGNLRQAAID 1295
Query: 1134 RFNQ-DKSRFVFLLSTRSCGLGINLATADTVIIYDSDFNPHADIQAMNRAHRIGQSKRLL 1192
RF++ D RFVFLL TR+ GLGINL ADT II+DSD+NP D+QA R HRIGQ+K +
Sbjct: 1296 RFSKPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQNKAVK 1355
Query: 1193 VYRLVVRASVEERILQLAKKKLMLDQ 1218
VYRL+ R S E + A KL LD+
Sbjct: 1356 VYRLITRNSYEREMFDRASLKLGLDK 1381
Score = 326 (119.8 bits), Expect = 4.3e-22, Sum P(3) = 4.3e-22
Identities = 94/235 (40%), Positives = 127/235 (54%)
Query: 1058 SVEFLHEMRIKASAKLTLLHSMLKVLYKEGHRVLIFSQMTKLLDILEDYLNIE---FGPK 1114
+V+F + I+++ KL L+ +L + GH+VLIFSQM + LDILEDYL I+ +
Sbjct: 1222 AVDFHLQAMIQSAGKLVLIDKLLPKMKAGGHKVLIFSQMVRCLDILEDYL-IQRRYLYER 1280
Query: 1115 TYERVDGSVSVGDRQAAITRFNQDKSRFVFLLSTRSCGLGINLATADTVIIYDSDFNPHA 1174
RV G++ + A D RFVFLL TR+ GLGINL ADT II+DSD+NP
Sbjct: 1281 IDGRVRGNLR---QAAIDRFSKPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQN 1337
Query: 1175 DIQAMNRAHRIGQSKRLLVYRLVVRASVEERILQLAKKKLMLDQLFVNK-SG-------- 1225
D+QA R HRIGQ+K + VYRL+ R S E + A KL LD+ + SG
Sbjct: 1338 DLQAQARCHRIGQNKAVKVYRLITRNSYEREMFDRASLKLGLDKAVLQSMSGRDNSLAGG 1397
Query: 1226 -------SQKEVEDILRWGTEELFNDSPGINGKDMGENNTSIEEAVRDLEQKHRK 1273
S+KE+ED+LR G D +D E N EE + + Q+ K
Sbjct: 1398 GQMQQQLSKKEIEDLLRRGAYGAIMDE-----ED--EGNKFCEEDIDQILQRRTK 1445
Score = 54 (24.1 bits), Expect = 2.2e-110, Sum P(3) = 2.2e-110
Identities = 35/186 (18%), Positives = 77/186 (41%)
Query: 127 KPISNLDSISKRARSKIITIKSQSGVKSSGADKVSQIFGNSILARKRSNKGKSVLAL-GV 185
+P N + S + R T+KS S SS + S + + +K+ + + +
Sbjct: 515 QPPKNTNGPSSQPRVHSPTLKSSSSSSSSSSS--SYMSEKRLQKQKQQQQQQQQQQMESP 572
Query: 186 KSLEKSLDSSQVDVSCSTKP-ENTSAGVP-VEGSSSCPNDDDEKQLN-ASPTDSLADTKF 242
S +K ++++ K E +P V S P+ + + + A + S + K
Sbjct: 573 LSDDKQQKANRIISEAIAKARERGEKNIPRVMSPDSFPSSSSQHRSHKAGSSKSKSKDKS 632
Query: 243 HPAEEVLPHSQVTKSEQNDEVPVE--KHEKSSTNGSSGIKFVLAIGASERDRKRKPEVKD 300
++ S+ + Q ++ ++ K ++ T+ S + S+ DR + KD
Sbjct: 633 SKKARIVKSSKPKQKAQIGKIVIKFGKKKRKKTDSSEEL--------SDDDRPTRRSSKD 684
Query: 301 EDSQKK 306
+DS+++
Sbjct: 685 DDSKRR 690
Score = 47 (21.6 bits), Expect = 1.2e-109, Sum P(3) = 1.2e-109
Identities = 12/60 (20%), Positives = 27/60 (45%)
Query: 221 PNDDDEKQLNASPTDSLADTKFHPAEEVLPHSQVTKSEQNDEVPVEKHEKSSTNGSSGIK 280
PN+ + N+ S+ + FHP HSQ + ++ +P+ H+ + + ++
Sbjct: 224 PNNSQQGHHNSL---SVEGSSFHPTVAPGGHSQSKQYIESSMMPMASHQHTGFQATQRVQ 280
Score = 45 (20.9 bits), Expect = 2.0e-109, Sum P(3) = 2.0e-109
Identities = 37/194 (19%), Positives = 79/194 (40%)
Query: 107 KRIPNGKWQCPKCTQKNDQLK-PISNLDSISKRARSKIITIKSQSGVKSSGADKVSQIFG 165
KR+ K Q + Q+ Q++ P+S D ++A ++II+ ++ + + G + ++
Sbjct: 552 KRLQKQKQQQQQ--QQQQQMESPLS--DDKQQKA-NRIIS-EAIAKARERGEKNIPRVMS 605
Query: 166 NSILARKRSNKGKSVLALGVKSLEKSLDSSQVDVSCSTKPENTSAGVPVEGSSSCPNDDD 225
S++ +S A KS K S + + S+KP+ + +
Sbjct: 606 PDSFPSS-SSQHRSHKAGSSKSKSKDKSSKKARIVKSSKPKQKA-----QIGKIVIKFGK 659
Query: 226 EKQLNASPTDSLADTKFHPAEEVLPHSQVTKSEQNDEVPVEKHEKSSTNGSSGIKFVLAI 285
+K+ ++ L+D P +K N +V +K+E S + + +
Sbjct: 660 KKRKKTDSSEELSDDD-RPTRRSSKDDD-SKRRSNRKVKRKKYEDDGEARISDEEMKVIV 717
Query: 286 GASERDRKRKPEVK 299
A + +KP V+
Sbjct: 718 KAKKSSSNKKPAVQ 731
Score = 40 (19.1 bits), Expect = 6.7e-109, Sum P(3) = 6.7e-109
Identities = 15/64 (23%), Positives = 27/64 (42%)
Query: 357 GTKGLDAQRKDELAEETTDPLDKSDKAGVHVNEIPLCKDIVPFELQQVDRVLGCRVKGDD 416
GT LD DELA + +D ++ + + IP + + F+ + + G D
Sbjct: 32 GTVSLD----DELALGPSLVVDAGSRSSIVQHGIPYSQPVGHFDTMKAQTSMEQSFPGPD 87
Query: 417 TSSS 420
S+
Sbjct: 88 ADSN 91
Score = 39 (18.8 bits), Expect = 3.2e-20, Sum P(4) = 3.2e-20
Identities = 10/20 (50%), Positives = 12/20 (60%)
Query: 933 GEMYNLLNFLQPASFPSLSS 952
GE N+ + P SFPS SS
Sbjct: 596 GEK-NIPRVMSPDSFPSSSS 614
Score = 37 (18.1 bits), Expect = 2.2e-110, Sum P(3) = 2.2e-110
Identities = 7/31 (22%), Positives = 15/31 (48%)
Query: 1335 NEETTEDQAESPVAAVDDASAENSERKEENA 1365
+E+ D+ E P D + E S + + ++
Sbjct: 2899 SEDKDSDEGEEPDEKKDTSGPEGSAKADSSS 2929
>UNIPROTKB|F1S8J5 [details] [associations]
symbol:CHD8 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071339 "MLL1 complex" evidence=IEA] [GO:0060070
"canonical Wnt receptor signaling pathway" evidence=IEA]
[GO:0045945 "positive regulation of transcription from RNA
polymerase III promoter" evidence=IEA] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0043066 "negative regulation of
apoptotic process" evidence=IEA] [GO:0043044 "ATP-dependent
chromatin remodeling" evidence=IEA] [GO:0035064 "methylated histone
residue binding" evidence=IEA] [GO:0030178 "negative regulation of
Wnt receptor signaling pathway" evidence=IEA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IEA] [GO:0008013
"beta-catenin binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003678 "DNA helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0002039 "p53 binding"
evidence=IEA] [GO:0001701 "in utero embryonic development"
evidence=IEA] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271
Pfam:PF07533 PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298
SMART:SM00490 SMART:SM00592 Pfam:PF00385 GO:GO:0005524
GO:GO:0045892 GO:GO:0043066 GO:GO:0003677 GO:GO:0001701
GO:GO:0045944 GO:GO:0045945 GO:GO:0030178 GO:GO:0060070
InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0003678 GO:GO:0043044 GO:GO:0071339
InterPro:IPR023780 GO:GO:0008094 GeneTree:ENSGT00560000077077
OMA:FLAYMED EMBL:FP340603 Ensembl:ENSSSCT00000002379
ArrayExpress:F1S8J5 Uniprot:F1S8J5
Length = 2569
Score = 1081 (385.6 bits), Expect = 3.1e-110, Sum P(3) = 3.1e-110
Identities = 311/886 (35%), Positives = 445/886 (50%)
Query: 516 REDDKDSDPVAVNGKVQDESAVSTEDLGER-NDKMVVEDADVS--LRDNEGLT--VSEIH 570
RED++ S + + Q + TEDL + D E+ DV+ ++ L V E
Sbjct: 564 REDEESSIQKRRSNR-QVKRKKYTEDLDIKITDDEEEEEVDVTGPIKTEPILPEPVQEPD 622
Query: 571 -ITCESTDKDVDVGKKTSGSVAKRVQEPAVTESAQVKGKAV-SYEFLVKWVGKSNIHNSW 628
T S V+ + ++ +V + + G+ + EF VK+ S +H W
Sbjct: 623 GETLPSMQFFVENPSEEDAAIVDKVLSMRIVKKELPSGQYTEAEEFFVKYKNYSYLHCEW 682
Query: 629 IPESQLKVLAK--RKLENYKAKYGTT--VINICDERWK----QPQRVISLRSS--KDGTR 678
SQL+ + +KL+ +K K + +E + + R++ S KD
Sbjct: 683 ATISQLEKDKRIHQKLKRFKTKMAQMRHFFHEDEEPFNPDYVEVDRILDESHSIDKDNGE 742
Query: 679 EAF---VKWTGLPYDECTWEKLDEPALEKYSHLTDLFVQFERQTLKKDASEDELPRGKGD 735
VKW LPY++ TWE L E E +F+R + EL R
Sbjct: 743 PVIYYLVKWCSLPYEDSTWE-LKEDVDEGKIR------EFKRI----QSRHPELKRVNRP 791
Query: 736 CQQSEIVALTEQPEELKGGALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFI 795
Q S L E L +QLE +NWL W+ +N ILADEMGLGKT+ + AF+
Sbjct: 792 -QASAWKKLELSHEYKNRNQLREYQLEGVNWLLFNWYNRQNCILADEMGLGKTIQSIAFL 850
Query: 796 SSLYCEFKAKLPCLVLVPLSTMPNWLAEFALWAPNLNVVEYHGCAKARAIIRQYEWHASD 855
+Y P LV+ PLST+ NW EF W +N + YHG +R +I+QYE + D
Sbjct: 851 QEVY-NVGIHGPFLVIAPLSTITNWEREFNTWT-EMNTIVYHGSLASRQMIQQYEMYCKD 908
Query: 856 PDNLNKKTSSYKFNVLLTTYEMILADSSHLRGVPWEVLVVDEGHRXXXXXXXXXXXXXXX 915
+YKF+ L+TT+EMIL+D LR + W +++DE HR
Sbjct: 909 SRG-RLIPGAYKFDALITTFEMILSDCPELREIEWRCVIIDEAHRLKNRNCKLLDSLKHM 967
Query: 916 XXQHRVLLTGTPLQNNIGEMYNLLNFLQPASFPSLSSFEEKFNDLTTTQKVEELKKLVAP 975
+H+VLLTGTPLQN + E+++LL+FL+P+ FPS S F + F DL T ++V++L+ ++ P
Sbjct: 968 DLEHKVLLTGTPLQNTVEELFSLLHFLEPSQFPSESEFLKDFGDLKTEEQVQKLQAILKP 1027
Query: 976 HMLRRLKKDAMQNIPPKTERMVPVELSSIQAEYYRAMLTKNYQILRNIGKGVAQQ-SMLN 1034
MLRRLK+D +N+ PK E ++ VEL++IQ +YYRA+L KN+ L G G ++LN
Sbjct: 1028 MMLRRLKEDVEKNLAPKQETIIEVELTNIQKKYYRAILEKNFSFLSK-GAGHTNMPNLLN 1086
Query: 1035 IVMQLRKVCNHPYLIPGTEPDSGSVEFL-------HEMRIKA----SAKLTLLHSMLKVL 1083
+M+LRK CNHPYLI + EF H+ ++A + KL L+ +L L
Sbjct: 1087 TMMELRKCCNHPYLINAGAEEKILTEFREACHIIPHDFHLQAMVRSAGKLVLIDKLLPKL 1146
Query: 1084 YKEGHRVLIFSQMTKLLDILEDYLNIEFGPKTYERVDGSVSVGDRQAAITRFNQ-DKSRF 1142
GH+VLIFSQM + LDILEDYL I+ YER+DG V RQAAI RF++ D RF
Sbjct: 1147 KAGGHKVLIFSQMVRCLDILEDYL-IQ-RRYLYERIDGRVRGNLRQAAIDRFSKPDSDRF 1204
Query: 1143 VFLLSTRSCGLGINLATADTVIIYDSDFNPHADIQAMNRAHRIGQSKRLLVYRLVVRASV 1202
VFLL TR+ GLGINL ADT II+DSD+NP D+QA R HRIGQSK + VYRL+ R S
Sbjct: 1205 VFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVKVYRLITRNSY 1264
Query: 1203 EERILQLAKKKLMLDQLFVNK-SGSQKEVEDILRWGTEELFND--SPGINGKDMGENNTS 1259
E + A KL LD+ + SG + I ++ +E+ D G M E++
Sbjct: 1265 EREMFDKASLKLGLDKAVLQSMSGRDGNITGIQQFSKKEI-EDLLRKGAYAAIMEEDDEG 1323
Query: 1260 IEEAVRDLEQKHRKRGGGLGDVYQDK-CTEGSTKIVWDENAIARLLDRSNLQSGSTDLAE 1318
+ D++Q +R + + K T V EN LD N A
Sbjct: 1324 SKFCEEDIDQILLRRTTTITIESEGKGSTFAKASFVASENRTDISLDDPNFWQKWAKKA- 1382
Query: 1319 GDLENDMLGSVKATEWNEETTEDQAESPVAAVDDASAENSERKEEN 1364
DL+ D+L S + Q DD E S+ + E+
Sbjct: 1383 -DLDMDLLNSKNNLVIDTPRVRKQTRHFSTLKDDDLVEFSDLESED 1427
Score = 45 (20.9 bits), Expect = 3.1e-110, Sum P(3) = 3.1e-110
Identities = 39/166 (23%), Positives = 62/166 (37%)
Query: 126 LKPISNLDSISKRARSKIITIKSQSGVKSSGADKVSQIFGNSILARKRSNKGKSVLALGV 185
LKP L S + SK IT+ Q +S G + S L K +G + AL
Sbjct: 269 LKPAVTLTSTPTQGESKRITLVLQQP-QSGGPQGHRHVVLGS-LPGKIVLQGNQLAALTQ 326
Query: 186 KSLEKSLDSSQVDVSCSTK-PENTSAGVPVEGSSSCPNDDDEKQLNASPTDSLADTKFHP 244
+ + V + + P+ VP P+ + Q S T +A +
Sbjct: 327 AKNAQGQPAKVVTIQLQVQQPQQKIQIVPQP-----PSSQPQPQQPPS-TQPVALSSVQQ 380
Query: 245 AEEVLP-HSQVTKSEQNDEVPVEKHEKSSTNGSSGIKFVLAIGASE 289
A+ + P + +V ++ SS SSG+ V + ASE
Sbjct: 381 AQIMGPGQGPGQRLSVPLKVVLQPQAGSSQGASSGLSVVKVLSASE 426
Score = 42 (19.8 bits), Expect = 6.5e-110, Sum P(3) = 6.5e-110
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 256 KSEQNDEVPVEKHEKSSTNGSSGIK 280
K + + EK +KS T+G+S K
Sbjct: 504 KKSSGERLKEEKPKKSKTSGTSKTK 528
Score = 40 (19.1 bits), Expect = 3.1e-110, Sum P(3) = 3.1e-110
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 1338 TTEDQAESPVAAVDDASAENSERKEENAVT 1367
T + +SPV +SA + +E +AVT
Sbjct: 2206 TPGEYGDSPVPTPRSSSAASMAEEEVSAVT 2235
Score = 40 (19.1 bits), Expect = 1.0e-109, Sum P(3) = 1.0e-109
Identities = 7/21 (33%), Positives = 13/21 (61%)
Query: 360 GLDAQRKDELAEETTDPLDKS 380
GLD+ D + T DP++++
Sbjct: 16 GLDSLTDDSFNQVTQDPIEEA 36
Score = 37 (18.1 bits), Expect = 2.2e-109, Sum P(3) = 2.2e-109
Identities = 10/34 (29%), Positives = 16/34 (47%)
Query: 19 KRKRRKLPCGPGLSNGKEENLVTSESPRNTPSAK 52
++KRRK G L K + TS + + +K
Sbjct: 499 EKKRRKKSSGERLKEEKPKKSKTSGTSKTKGKSK 532
>UNIPROTKB|F1MLB2 [details] [associations]
symbol:CHD8 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0071339 "MLL1 complex" evidence=IEA] [GO:0060070
"canonical Wnt receptor signaling pathway" evidence=IEA]
[GO:0045945 "positive regulation of transcription from RNA
polymerase III promoter" evidence=IEA] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0043066 "negative regulation of
apoptotic process" evidence=IEA] [GO:0043044 "ATP-dependent
chromatin remodeling" evidence=IEA] [GO:0035064 "methylated histone
residue binding" evidence=IEA] [GO:0030178 "negative regulation of
Wnt receptor signaling pathway" evidence=IEA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IEA] [GO:0008013
"beta-catenin binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003678 "DNA helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0002039 "p53 binding"
evidence=IEA] [GO:0001701 "in utero embryonic development"
evidence=IEA] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271
Pfam:PF07533 PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298
SMART:SM00490 SMART:SM00592 Pfam:PF00385 GO:GO:0005524
GO:GO:0045892 GO:GO:0043066 GO:GO:0003677 GO:GO:0001701
GO:GO:0045944 GO:GO:0045945 GO:GO:0030178 GO:GO:0060070
InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0003678 GO:GO:0043044 GO:GO:0071339
InterPro:IPR023780 GO:GO:0008094 GeneTree:ENSGT00560000077077
OMA:FLAYMED EMBL:DAAA02028315 EMBL:DAAA02028312 EMBL:DAAA02028313
EMBL:DAAA02028314 IPI:IPI01017729 Ensembl:ENSBTAT00000027215
Uniprot:F1MLB2
Length = 2537
Score = 1081 (385.6 bits), Expect = 4.6e-110, Sum P(3) = 4.6e-110
Identities = 311/886 (35%), Positives = 445/886 (50%)
Query: 516 REDDKDSDPVAVNGKVQDESAVSTEDLGER-NDKMVVEDADVS--LRDNEGLT--VSEIH 570
RED++ S + + Q + TEDL + D E+ DV+ ++ L V E
Sbjct: 517 REDEESSIQKRRSNR-QVKRKKYTEDLDIKITDDEEEEEVDVTGPIKTEPILPEPVQEPD 575
Query: 571 -ITCESTDKDVDVGKKTSGSVAKRVQEPAVTESAQVKGKAV-SYEFLVKWVGKSNIHNSW 628
T S V+ + ++ +V + + G+ + EF VK+ S +H W
Sbjct: 576 GETLPSMQFFVENPSEEDAAIVDKVLSMRIVKKELPSGQYTEAEEFFVKYKNYSYLHCEW 635
Query: 629 IPESQLKVLAK--RKLENYKAKYGTT--VINICDERWK----QPQRVISLRSS--KDGTR 678
SQL+ + +KL+ +K K + +E + + R++ S KD
Sbjct: 636 ATISQLEKDKRIHQKLKRFKTKMAQMRHFFHEDEEPFNPDYVEVDRILDESHSIDKDNGE 695
Query: 679 EAF---VKWTGLPYDECTWEKLDEPALEKYSHLTDLFVQFERQTLKKDASEDELPRGKGD 735
VKW LPY++ TWE L E E +F+R + EL R
Sbjct: 696 PVIYYLVKWCSLPYEDSTWE-LKEDVDEGKIR------EFKRI----QSRHPELKRVNRP 744
Query: 736 CQQSEIVALTEQPEELKGGALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFI 795
Q S L E L +QLE +NWL W+ +N ILADEMGLGKT+ + AF+
Sbjct: 745 -QASAWKKLELSHEYKNRNQLREYQLEGVNWLLFNWYNRQNCILADEMGLGKTIQSIAFL 803
Query: 796 SSLYCEFKAKLPCLVLVPLSTMPNWLAEFALWAPNLNVVEYHGCAKARAIIRQYEWHASD 855
+Y P LV+ PLST+ NW EF W +N + YHG +R +I+QYE + D
Sbjct: 804 QEVY-NVGIHGPFLVIAPLSTITNWEREFNTWT-EMNTIVYHGSLASRQMIQQYEMYCKD 861
Query: 856 PDNLNKKTSSYKFNVLLTTYEMILADSSHLRGVPWEVLVVDEGHRXXXXXXXXXXXXXXX 915
+YKF+ L+TT+EMIL+D LR + W +++DE HR
Sbjct: 862 SRG-RLIPGAYKFDALITTFEMILSDCPELREIEWRCVIIDEAHRLKNRNCKLLDSLKHM 920
Query: 916 XXQHRVLLTGTPLQNNIGEMYNLLNFLQPASFPSLSSFEEKFNDLTTTQKVEELKKLVAP 975
+H+VLLTGTPLQN + E+++LL+FL+P+ FPS S F + F DL T ++V++L+ ++ P
Sbjct: 921 DLEHKVLLTGTPLQNTVEELFSLLHFLEPSQFPSESEFLKDFGDLKTEEQVQKLQAILKP 980
Query: 976 HMLRRLKKDAMQNIPPKTERMVPVELSSIQAEYYRAMLTKNYQILRNIGKGVAQQ-SMLN 1034
MLRRLK+D +N+ PK E ++ VEL++IQ +YYRA+L KN+ L G G ++LN
Sbjct: 981 MMLRRLKEDVEKNLAPKQETIIEVELTNIQKKYYRAILEKNFSFLSK-GAGHTNMPNLLN 1039
Query: 1035 IVMQLRKVCNHPYLIPGTEPDSGSVEFL-------HEMRIKA----SAKLTLLHSMLKVL 1083
+M+LRK CNHPYLI + EF H+ ++A + KL L+ +L L
Sbjct: 1040 TMMELRKCCNHPYLINAGAEEKILTEFREACHIIPHDFHLQAMVRSAGKLVLIDKLLPKL 1099
Query: 1084 YKEGHRVLIFSQMTKLLDILEDYLNIEFGPKTYERVDGSVSVGDRQAAITRFNQ-DKSRF 1142
GH+VLIFSQM + LDILEDYL I+ YER+DG V RQAAI RF++ D RF
Sbjct: 1100 KAGGHKVLIFSQMVRCLDILEDYL-IQ-RRYLYERIDGRVRGNLRQAAIDRFSKPDSDRF 1157
Query: 1143 VFLLSTRSCGLGINLATADTVIIYDSDFNPHADIQAMNRAHRIGQSKRLLVYRLVVRASV 1202
VFLL TR+ GLGINL ADT II+DSD+NP D+QA R HRIGQSK + VYRL+ R S
Sbjct: 1158 VFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVKVYRLITRNSY 1217
Query: 1203 EERILQLAKKKLMLDQLFVNK-SGSQKEVEDILRWGTEELFND--SPGINGKDMGENNTS 1259
E + A KL LD+ + SG + I ++ +E+ D G M E++
Sbjct: 1218 EREMFDKASLKLGLDKAVLQSMSGRDGNITGIQQFSKKEI-EDLLRKGAYAAIMEEDDEG 1276
Query: 1260 IEEAVRDLEQKHRKRGGGLGDVYQDK-CTEGSTKIVWDENAIARLLDRSNLQSGSTDLAE 1318
+ D++Q +R + + K T V EN LD N A
Sbjct: 1277 SKFCEEDIDQILLRRTTTITIESEGKGSTFAKASFVASENRTDISLDDPNFWQKWAKKA- 1335
Query: 1319 GDLENDMLGSVKATEWNEETTEDQAESPVAAVDDASAENSERKEEN 1364
DL+ D+L S + Q DD E S+ + E+
Sbjct: 1336 -DLDMDLLNSKNNLVIDTPRVRKQTRHFSTLKDDDLVEFSDLESED 1380
Score = 43 (20.2 bits), Expect = 4.6e-110, Sum P(3) = 4.6e-110
Identities = 36/165 (21%), Positives = 60/165 (36%)
Query: 126 LKPISNLDSISKRARSKIITIKSQSGVKSSGADKVSQIFGNSILARKRSNKGKSVLALGV 185
LKP L S + SK IT+ Q +S G + S L K +G + AL
Sbjct: 222 LKPAVTLTSTPTQGESKRITLVLQQP-QSGGPQGHRHVVLGS-LPGKIVLQGNQLAALTQ 279
Query: 186 KSLEKSLDSSQVDVSCSTK-PENTSAGVPVEGSSSCPNDDDEKQLNASPTDSLADTKFHP 244
+ + V + + P+ VP + SS P S+ +
Sbjct: 280 AKNAQGQPAKVVTIQLQVQQPQQKIQIVP-QPPSSQPQPQQPPSTQPVTLSSVQQAQIMG 338
Query: 245 AEEVLPHSQVTKSEQNDEVPVEKHEKSSTNGSSGIKFVLAIGASE 289
+ P +++ + V ++ SS SSG+ V + A+E
Sbjct: 339 PGQA-PGQRLSVPLK---VVLQPQAGSSQGASSGLSVVKVLSATE 379
Score = 42 (19.8 bits), Expect = 5.9e-110, Sum P(3) = 5.9e-110
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 256 KSEQNDEVPVEKHEKSSTNGSSGIK 280
K + + EK +KS T+G+S K
Sbjct: 457 KKSSGERLKEEKPKKSKTSGTSKTK 481
Score = 40 (19.1 bits), Expect = 4.6e-110, Sum P(3) = 4.6e-110
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 1338 TTEDQAESPVAAVDDASAENSERKEENAVT 1367
T + +SPV +SA + +E +AVT
Sbjct: 2159 TPGEYGDSPVPTPRSSSAASMAEEEVSAVT 2188
Score = 40 (19.1 bits), Expect = 9.6e-110, Sum P(3) = 9.6e-110
Identities = 7/21 (33%), Positives = 13/21 (61%)
Query: 360 GLDAQRKDELAEETTDPLDKS 380
GLD+ D + T DP++++
Sbjct: 16 GLDSLTDDSFNQVTQDPIEEA 36
Score = 37 (18.1 bits), Expect = 2.0e-109, Sum P(3) = 2.0e-109
Identities = 10/34 (29%), Positives = 16/34 (47%)
Query: 19 KRKRRKLPCGPGLSNGKEENLVTSESPRNTPSAK 52
++KRRK G L K + TS + + +K
Sbjct: 452 EKKRRKKSSGERLKEEKPKKSKTSGTSKTKGKSK 485
>UNIPROTKB|E2QUS7 [details] [associations]
symbol:CHD8 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271 Pfam:PF07533
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
SMART:SM00592 Pfam:PF00385 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
GeneTree:ENSGT00560000077077 OMA:FLAYMED EMBL:AAEX03009852
Ensembl:ENSCAFT00000009065 Uniprot:E2QUS7
Length = 2586
Score = 1081 (385.6 bits), Expect = 6.8e-110, Sum P(3) = 6.8e-110
Identities = 311/886 (35%), Positives = 445/886 (50%)
Query: 516 REDDKDSDPVAVNGKVQDESAVSTEDLGER-NDKMVVEDADVS--LRDNEGLT--VSEIH 570
RED++ S + + Q + TEDL + D E+ DV+ ++ L V E
Sbjct: 564 REDEESSIQKRRSNR-QVKRKKYTEDLDIKITDDEEEEEVDVTGPIKTEPILPEPVQEPD 622
Query: 571 -ITCESTDKDVDVGKKTSGSVAKRVQEPAVTESAQVKGKAV-SYEFLVKWVGKSNIHNSW 628
T S V+ + ++ +V + + G+ + EF VK+ S +H W
Sbjct: 623 GETLPSMQFFVENPSEEDAAIVDKVLSMRIVKKELPSGQYTEAEEFFVKYKNYSYLHCEW 682
Query: 629 IPESQLKVLAK--RKLENYKAKYGTT--VINICDERWK----QPQRVISLRSS--KDGTR 678
SQL+ + +KL+ +K K + +E + + R++ S KD
Sbjct: 683 ATISQLEKDKRIHQKLKRFKTKMAQMRHFFHEDEEPFNPDYVEVDRILDESHSIDKDNGE 742
Query: 679 EAF---VKWTGLPYDECTWEKLDEPALEKYSHLTDLFVQFERQTLKKDASEDELPRGKGD 735
VKW LPY++ TWE L E E +F+R + EL R
Sbjct: 743 PVIYYLVKWCSLPYEDSTWE-LKEDVDEGKIR------EFKRI----QSRHPELKRVNRP 791
Query: 736 CQQSEIVALTEQPEELKGGALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFI 795
Q S L E L +QLE +NWL W+ +N ILADEMGLGKT+ + AF+
Sbjct: 792 -QASAWKKLELSHEYKNRNQLREYQLEGVNWLLFNWYNRQNCILADEMGLGKTIQSIAFL 850
Query: 796 SSLYCEFKAKLPCLVLVPLSTMPNWLAEFALWAPNLNVVEYHGCAKARAIIRQYEWHASD 855
+Y P LV+ PLST+ NW EF W +N + YHG +R +I+QYE + D
Sbjct: 851 QEVY-NVGIHGPFLVIAPLSTITNWEREFNTWT-EMNTIVYHGSLASRQMIQQYEMYCKD 908
Query: 856 PDNLNKKTSSYKFNVLLTTYEMILADSSHLRGVPWEVLVVDEGHRXXXXXXXXXXXXXXX 915
+YKF+ L+TT+EMIL+D LR + W +++DE HR
Sbjct: 909 SRG-RLIPGAYKFDALITTFEMILSDCPELREIEWRCVIIDEAHRLKNRNCKLLDSLKHM 967
Query: 916 XXQHRVLLTGTPLQNNIGEMYNLLNFLQPASFPSLSSFEEKFNDLTTTQKVEELKKLVAP 975
+H+VLLTGTPLQN + E+++LL+FL+P+ FPS S F + F DL T ++V++L+ ++ P
Sbjct: 968 DLEHKVLLTGTPLQNTVEELFSLLHFLEPSQFPSESEFLKDFGDLKTEEQVQKLQAILKP 1027
Query: 976 HMLRRLKKDAMQNIPPKTERMVPVELSSIQAEYYRAMLTKNYQILRNIGKGVAQQ-SMLN 1034
MLRRLK+D +N+ PK E ++ VEL++IQ +YYRA+L KN+ L G G ++LN
Sbjct: 1028 MMLRRLKEDVEKNLAPKQETIIEVELTNIQKKYYRAILEKNFSFLSK-GAGHTNMPNLLN 1086
Query: 1035 IVMQLRKVCNHPYLIPGTEPDSGSVEFL-------HEMRIKA----SAKLTLLHSMLKVL 1083
+M+LRK CNHPYLI + EF H+ ++A + KL L+ +L L
Sbjct: 1087 TMMELRKCCNHPYLINAGAEEKILTEFREACHIIPHDFHLQAMVRSAGKLVLIDKLLPKL 1146
Query: 1084 YKEGHRVLIFSQMTKLLDILEDYLNIEFGPKTYERVDGSVSVGDRQAAITRFNQ-DKSRF 1142
GH+VLIFSQM + LDILEDYL I+ YER+DG V RQAAI RF++ D RF
Sbjct: 1147 KAGGHKVLIFSQMVRCLDILEDYL-IQ-RRYLYERIDGRVRGNLRQAAIDRFSKPDSDRF 1204
Query: 1143 VFLLSTRSCGLGINLATADTVIIYDSDFNPHADIQAMNRAHRIGQSKRLLVYRLVVRASV 1202
VFLL TR+ GLGINL ADT II+DSD+NP D+QA R HRIGQSK + VYRL+ R S
Sbjct: 1205 VFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVKVYRLITRNSY 1264
Query: 1203 EERILQLAKKKLMLDQLFVNK-SGSQKEVEDILRWGTEELFND--SPGINGKDMGENNTS 1259
E + A KL LD+ + SG + I ++ +E+ D G M E++
Sbjct: 1265 EREMFDKASLKLGLDKAVLQSMSGRDGNITGIQQFSKKEI-EDLLRKGAYAAIMEEDDEG 1323
Query: 1260 IEEAVRDLEQKHRKRGGGLGDVYQDK-CTEGSTKIVWDENAIARLLDRSNLQSGSTDLAE 1318
+ D++Q +R + + K T V EN LD N A
Sbjct: 1324 SKFCEEDIDQILLRRTTTITIESEGKGSTFAKASFVASENRTDISLDDPNFWQKWAKKA- 1382
Query: 1319 GDLENDMLGSVKATEWNEETTEDQAESPVAAVDDASAENSERKEEN 1364
DL+ D+L S + Q DD E S+ + E+
Sbjct: 1383 -DLDMDLLNSKNNLVIDTPRVRKQTRHFSTLKDDDLVEFSDLESED 1427
Score = 42 (19.8 bits), Expect = 6.8e-110, Sum P(3) = 6.8e-110
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 256 KSEQNDEVPVEKHEKSSTNGSSGIK 280
K + + EK +KS T+G+S K
Sbjct: 504 KKSSGERLKEEKPKKSKTSGTSKTK 528
Score = 42 (19.8 bits), Expect = 6.8e-110, Sum P(3) = 6.8e-110
Identities = 37/166 (22%), Positives = 61/166 (36%)
Query: 126 LKPISNLDSISKRARSKIITIKSQSGVKSSGADKVSQIFGNSILARKRSNKGKSVLALGV 185
LKP L S + SK IT+ Q +S G + S L K +G + AL
Sbjct: 269 LKPAVTLTSTPTQGESKRITLVLQQP-QSGGPQGHRHVVLGS-LPGKIVLQGNQLAALTQ 326
Query: 186 KSLEKSLDSSQVDVSCSTK-PENTSAGVPVEGSSSCPNDDDEKQLNASPTDSLADTKFH- 243
+ + V + + P+ VP + +S P S+ +
Sbjct: 327 AKNAQGQPAKVVTIQLQVQQPQQKIQIVP-QPPASQPQPPPPPSTQPVTLSSVQQAQIMG 385
Query: 244 PAEEVLPHSQVTKSEQNDEVPVEKHEKSSTNGSSGIKFVLAIGASE 289
P + P +++ + V ++ SS SSG+ V + ASE
Sbjct: 386 PGQS--PGQRLSVPLK---VVLQPQAGSSQGASSGLSVVKVLSASE 426
Score = 40 (19.1 bits), Expect = 6.8e-110, Sum P(3) = 6.8e-110
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 1338 TTEDQAESPVAAVDDASAENSERKEENAVT 1367
T + +SPV +SA + +E +AVT
Sbjct: 2208 TPGEYGDSPVPTPRSSSAASMAEEEVSAVT 2237
Score = 40 (19.1 bits), Expect = 1.1e-109, Sum P(3) = 1.1e-109
Identities = 7/21 (33%), Positives = 13/21 (61%)
Query: 360 GLDAQRKDELAEETTDPLDKS 380
GLD+ D + T DP++++
Sbjct: 16 GLDSLTDDSFNQVTQDPIEEA 36
Score = 37 (18.1 bits), Expect = 2.3e-109, Sum P(3) = 2.3e-109
Identities = 10/34 (29%), Positives = 16/34 (47%)
Query: 19 KRKRRKLPCGPGLSNGKEENLVTSESPRNTPSAK 52
++KRRK G L K + TS + + +K
Sbjct: 499 EKKRRKKSSGERLKEEKPKKSKTSGTSKTKGKSK 532
>RGD|1306794 [details] [associations]
symbol:Chd1 "chromodomain helicase DNA binding protein 1"
species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006338 "chromatin remodeling" evidence=ISO]
[GO:0035064 "methylated histone residue binding" evidence=ISO]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 RGD:1306794 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0006338 GO:GO:0004386
InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR023780 InterPro:IPR023779
PROSITE:PS00598 GeneTree:ENSGT00560000076896 OrthoDB:EOG4PG601
IPI:IPI00767719 Ensembl:ENSRNOT00000019358 UCSC:RGD:1306794
Uniprot:D4AAG9
Length = 904
Score = 959 (342.6 bits), Expect = 1.1e-108, Sum P(3) = 1.1e-108
Identities = 230/567 (40%), Positives = 325/567 (57%)
Query: 639 KRKLENYK---AKYGTTVINICDERWKQPQ---RVISLRSSKD--GTREAFVKWTGLPYD 690
KR L+N +Y + D+ KQ Q R+I+ + K G + + KW GLPY
Sbjct: 358 KRWLKNASPEDVEYYNCQQELTDDLHKQYQIVERIIAHSNQKSAAGLPDYYCKWQGLPYS 417
Query: 691 ECTWEKLDEPALEKYSHLTDLFVQFERQTLKKDASEDELPRGKGDCQQSEIVALTEQPEE 750
EC+WE + AL T + F R K +D K Q+ VAL +QP
Sbjct: 418 ECSWE---DGALISKKFQTCIDEYFSRNQSKTTPFKD----CKVLKQRPRFVALKKQPSY 470
Query: 751 LKG--GA-LFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLP 807
+ G G L +QL LNWL W K + ILADEMGLGKT+ +F++ L+ E + P
Sbjct: 471 IGGHEGLELRDYQLNGLNWLAHSWCKGNSCILADEMGLGKTIQTISFLNYLFHEHQLYGP 530
Query: 808 CLVLVPLSTMPNWLAEFALWAPNLNVVEYHGCAKARAIIRQYEWHASDPDNLNKKTSSYK 867
L++VPLST+ +W E WA +N V Y G +R +IR +EW ++ +T K
Sbjct: 531 FLLVVPLSTLTSWQREIQTWASQMNAVVYLGDINSRNMIRTHEW-------MHPQTKRLK 583
Query: 868 FNVLLTTYEMILADSSHLRGVPWEVLVVDEGHRXXXXXXXXXXXXXXXXXQHRVLLTGTP 927
FN+LLTTYE++L D + L G+ W + VDE HR HR+L+TGTP
Sbjct: 584 FNILLTTYEILLKDKAFLGGLNWAFIGVDEAHRLKNDDSLLYKTLIDFKSNHRLLITGTP 643
Query: 928 LQNNIGEMYNLLNFLQPASFPSLSSFEEKFNDLTTTQKVEELKKLVAPHMLRRLKKDAMQ 987
LQN++ E+++LL+F+ P F S FEE+ L K + P +LRR+KKD +
Sbjct: 644 LQNSLKELWSLLHFIMPEKFSSWEDFEEEHGK-GREYGYASLHKELEPFLLRRVKKDVEK 702
Query: 988 NIPPKTERMVPVELSSIQAEYYRAMLTKNYQILRNIGKGVAQQSMLNIVMQLRKVCNHPY 1047
++P K E+++ +E+S++Q +YY+ +LT+NY+ L KG + LNI+M+L+K CNH Y
Sbjct: 703 SLPAKVEQILRMEMSALQKQYYKWILTRNYKALSKGSKG-STSGFLNIMMELKKCCNHCY 761
Query: 1048 LI--PGTEPDSGSVEFLHEMRIKASAKLTLLHSMLKVLYKEGHRVLIFSQMTKLLDILED 1105
LI P E L + I++S KL LL +L L + G+RVLIFSQM ++LDIL +
Sbjct: 762 LIKPPDNNEFYNKQEALQHL-IRSSGKLILLDKLLIRLRERGNRVLIFSQMVRMLDILAE 820
Query: 1106 YLNIEFGPKTYERVDGSVSVGDRQAAITRFNQDKSR-FVFLLSTRSCGLGINLATADTVI 1164
YL P ++R+DGS+ RQA + FN S F FLLSTR+ GLGINLA+ADTV+
Sbjct: 821 YLKYRQFP--FQRLDGSIGELRRQA-LDHFNAXGSEDFCFLLSTRAGGLGINLASADTVV 877
Query: 1165 IYDSDFNPHADIQAMNRAHRIGQSKRL 1191
I+DSD+NP D+QA RAHRIGQ K++
Sbjct: 878 IFDSDWNPQNDLQAQARAHRIGQKKQV 904
Score = 112 (44.5 bits), Expect = 1.1e-108, Sum P(3) = 1.1e-108
Identities = 67/247 (27%), Positives = 112/247 (45%)
Query: 415 DDTSSSCHISATATD---DRHSD-DFLVSENHNKILEENLACDTDLDAEVTENLAELSPN 470
+D+SSS A+++D +H+D D+ +S + + D++ + E ++ + +
Sbjct: 123 EDSSSSEDSDASSSDVKRKKHNDEDWQMSGSGSP---SQSGSDSESEDERDKSSCDGT-- 177
Query: 471 VIRSSDEECMKNDIGVDRIQVYRRSVTKECKVTKECKGENAIDLLR-EDDKDSDPVAVNG 529
SD E KN + + Q RS +K K K + ID EDD+D D +
Sbjct: 178 ---ESDYE-PKNKVKSRKPQ--NRSKSKSGKKILGQK-KRQIDSSEDEDDEDYDNDKRSS 230
Query: 530 KVQDESAVS---TEDLGERNDKMV-VEDADVSLRDNEGLTVSEIHITCESTDKDVDVGKK 585
+ Q VS E++ +D ++ V DV ++E E + C K G
Sbjct: 231 RRQATVNVSYKEDEEMKTDSDDLLEVCGEDVPQTEDEEFETIERFMDCRVGRKGA-TGAT 289
Query: 586 TSGSVAKRVQEP-AVTESAQVKGKAVSYEFLVKWVGKSNIHNSWIPESQLK---VLAKRK 641
T+ + +P A E ++ G ++L+KW G S+IHN+W E LK V +K
Sbjct: 290 TTIYAIEADGDPNAGFEKSKEPGDV---QYLIKWKGWSHIHNTWETEETLKQQNVRGMKK 346
Query: 642 LENYKAK 648
L+NYK K
Sbjct: 347 LDNYKKK 353
Score = 53 (23.7 bits), Expect = 1.4e-102, Sum P(3) = 1.4e-102
Identities = 27/123 (21%), Positives = 43/123 (34%)
Query: 130 SNLDSISKRARSKIITIKSQSGVKSSGADKVSQIFGNSILARKRSNKGKSVLALGVKSLE 189
S DS S+ R K S G +S K +++ R +S GK +L + ++
Sbjct: 159 SGSDSESEDERDK----SSCDGTESDYEPK-NKVKSRKPQNRSKSKSGKKILGQKKRQID 213
Query: 190 KSLDSSQVDVSCSTKPENTSAGVPV---EGSSSCPNDDDEKQLNASPTDSLADTKFHPAE 246
S D D + A V V E + DD ++ D +F E
Sbjct: 214 SSEDEDDEDYDNDKRSSRRQATVNVSYKEDEEMKTDSDDLLEVCGEDVPQTEDEEFETIE 273
Query: 247 EVL 249
+
Sbjct: 274 RFM 276
Score = 52 (23.4 bits), Expect = 2.9e-102, Sum P(3) = 2.9e-102
Identities = 35/165 (21%), Positives = 63/165 (38%)
Query: 148 SQSGVKSS--GADKVSQIFGNSILARKRSNKGKSVLALGVKSLEKSLDSSQVDVSCSTKP 205
SQSG S G+D SQ S +R+ + K G + + + V S +
Sbjct: 45 SQSGSSDSDSGSDSGSQSESESDTSRENKVQAKPPKVDGAEFWKSNPSILAVQRSAMLRK 104
Query: 206 ENTSAGVPVEGSSSCPNDDDEKQLNASPTDSL-ADTKFHPAEEVLPHSQVTKSEQ-NDEV 263
+ SS+ +++D S S K H E+ + S+ +D
Sbjct: 105 QTQQPQQQRPASSNSGSEEDSSSSEDSDASSSDVKRKKHNDEDWQMSGSGSPSQSGSDSE 164
Query: 264 PVEKHEKSSTNGSSGIKFVLAIGASERDRKRKPEVKDED-SQKKL 307
++ +KSS +G+ + + RKP+ + + S KK+
Sbjct: 165 SEDERDKSSCDGTES-----DYEPKNKVKSRKPQNRSKSKSGKKI 204
Score = 45 (20.9 bits), Expect = 1.4e-102, Sum P(3) = 1.4e-102
Identities = 21/74 (28%), Positives = 36/74 (48%)
Query: 6 SSTSTMINRNWVLKRKRRKLPCG--PGLSN-GKEENLVTSE-SPRNTPSAKRRLKNEINA 61
S+ S + + + RK+ + P P SN G EE+ +SE S ++ KR+ N+ +
Sbjct: 89 SNPSILAVQRSAMLRKQTQQPQQQRPASSNSGSEEDSSSSEDSDASSSDVKRKKHNDEDW 148
Query: 62 DRS---STKKKGND 72
S S + G+D
Sbjct: 149 QMSGSGSPSQSGSD 162
Score = 44 (20.5 bits), Expect = 1.1e-108, Sum P(3) = 1.1e-108
Identities = 13/52 (25%), Positives = 25/52 (48%)
Query: 189 EKSLDSSQVDVSCSTKPENTSAGVPVEGSSSCPNDDDEKQLNASPTDSLADT 240
E+S+ + + S S +++G SS +D Q +S +DS +D+
Sbjct: 7 EESVRNGSGESSQSEDDSGSASGSGSGSSSGSSSDGSSSQSGSSDSDSGSDS 58
Score = 44 (20.5 bits), Expect = 1.1e-108, Sum P(3) = 1.1e-108
Identities = 16/53 (30%), Positives = 25/53 (47%)
Query: 190 KSLDSSQVDVSCSTKPENTSAGVPVEGSSSCP--NDDDEKQLNASPTDSLADT 240
+S S S S +S+G +GSSS +D D + S ++S +DT
Sbjct: 16 ESSQSEDDSGSASGSGSGSSSGSSSDGSSSQSGSSDSDSGSDSGSQSESESDT 68
Score = 43 (20.2 bits), Expect = 2.9e-102, Sum P(3) = 2.9e-102
Identities = 20/67 (29%), Positives = 32/67 (47%)
Query: 365 RKDELAEETTDPLDKSDKAGVHVNEIPLCKDIVPFELQQVDRVLGCRV--KGDDTSSSCH 422
++DE E TD D + G ++P +D E + ++R + CRV KG T ++
Sbjct: 241 KEDE--EMKTDSDDLLEVCG---EDVPQTEDE---EFETIERFMDCRVGRKGA-TGATTT 291
Query: 423 ISATATD 429
I A D
Sbjct: 292 IYAIEAD 298
Score = 41 (19.5 bits), Expect = 4.2e-101, Sum P(3) = 4.2e-101
Identities = 12/56 (21%), Positives = 27/56 (48%)
Query: 21 KRRKLPCGPGLSNGKEENLVTSESPRNTPSAK--RRLKNEINADRSSTKKKGNDGY 74
+R K C S+ + +N V S P+N +K +++ + S++ + ++ Y
Sbjct: 168 ERDKSSCDGTESDYEPKNKVKSRKPQNRSKSKSGKKILGQKKRQIDSSEDEDDEDY 223
>UNIPROTKB|H0YJG4 [details] [associations]
symbol:CHD8 "Chromodomain-helicase-DNA-binding protein 8"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:AL135744 EMBL:AL161747
HGNC:HGNC:20153 Ensembl:ENST00000555935 Uniprot:H0YJG4
Length = 873
Score = 1043 (372.2 bits), Expect = 2.2e-105, P = 2.2e-105
Identities = 257/637 (40%), Positives = 353/637 (55%)
Query: 746 EQPEELKG-GALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKA 804
E E K L +QLE +NWL W+ +N ILADEMGLGKT+ + AF+ +Y
Sbjct: 26 ELSHEYKNRNQLREYQLEGVNWLLFNWYNRQNCILADEMGLGKTIQSIAFLQEVY-NVGI 84
Query: 805 KLPCLVLVPLSTMPNWLAEFALWAPNLNVVEYHGCAKARAIIRQYEWHASDPDNLNKKTS 864
P LV+ PLST+ NW EF W +N + YHG +R +I+QYE + D
Sbjct: 85 HGPFLVIAPLSTITNWEREFNTWT-EMNTIVYHGSLASRQMIQQYEMYCKDSRG-RLIPG 142
Query: 865 SYKFNVLLTTYEMILADSSHLRGVPWEVLVVDEGHRXXXXXXXXXXXXXXXXXQHRVLLT 924
+YKF+ L+TT+EMIL+D LR + W +++DE HR +H+VLLT
Sbjct: 143 AYKFDALITTFEMILSDCPELREIEWRCVIIDEAHRLKNRNCKLLDSLKHMDLEHKVLLT 202
Query: 925 GTPLQNNIGEMYNLLNFLQPASFPSLSSFEEKFNDLTTTQKVEELKKLVAPHMLRRLKKD 984
GTPLQN + E+++LL+FL+P+ FPS S F + F DL T ++V++L+ ++ P MLRRLK+D
Sbjct: 203 GTPLQNTVEELFSLLHFLEPSQFPSESEFLKDFGDLKTEEQVQKLQAILKPMMLRRLKED 262
Query: 985 AMQNIPPKTERMVPVELSSIQAEYYRAMLTKNYQILRNIGKGVAQQ-SMLNIVMQLRKVC 1043
+N+ PK E ++ VEL++IQ +YYRA+L KN+ L G G ++LN +M+LRK C
Sbjct: 263 VEKNLAPKQETIIEVELTNIQKKYYRAILEKNFSFLSK-GAGHTNMPNLLNTMMELRKCC 321
Query: 1044 NHPYLIPGTEPDSGSVEFL-------HEMRIKA---SA-KLTLLHSMLKVLYKEGHRVLI 1092
NHPYLI G E + EF H+ ++A SA KL L+ +L L GH+VLI
Sbjct: 322 NHPYLINGAE-EKILTEFREACHIIPHDFHLQAMVRSAGKLVLIDKLLPKLKAGGHKVLI 380
Query: 1093 FSQMTKLLDILEDYLNIEFGPKTYERVDGSVSVGDRQAAITRFNQ-DKSRFVFLLSTRSC 1151
FSQM + LDILEDYL I+ YER+DG V RQAAI RF++ D RFVFLL TR+
Sbjct: 381 FSQMVRCLDILEDYL-IQ-RRYLYERIDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAG 438
Query: 1152 GLGINLATADTVIIYDSDFNPHADIQAMNRAHRIGQSKRLLVYRLVVRASVEERILQLAK 1211
GLGINL ADT II+DSD+NP D+QA R HRIGQSK + VYRL+ R S E + A
Sbjct: 439 GLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVKVYRLITRNSYEREMFDKAS 498
Query: 1212 KKLMLDQLFVNK-SGSQKEVEDILRWGTEELFND--SPGINGKDMGENNTSIEEAVRDLE 1268
KL LD+ + SG + I ++ +E+ D G M E++ + D++
Sbjct: 499 LKLGLDKAVLQSMSGRDGNITGIQQFSKKEI-EDLLRKGAYAAIMEEDDEGSKFCEEDID 557
Query: 1269 QKHRKRGGGLGDVYQDK-CTEGSTKIVWDENAIARLLDRSNLQSGSTDLAEGDLENDMLG 1327
Q +R + + K T V EN LD N A DL+ D+L
Sbjct: 558 QILLRRTTTITIESEGKGSTFAKASFVASENRTDISLDDPNFWQKWAKKA--DLDMDLLN 615
Query: 1328 SVKATEWNEETTEDQAESPVAAVDDASAENSERKEEN 1364
S + Q DD E S+ + E+
Sbjct: 616 SKNNLVIDTPRVRKQTRHFSTLKDDDLVEFSDLESED 652
>ASPGD|ASPL0000048785 [details] [associations]
symbol:AN1956 species:162425 "Emericella nidulans"
[GO:0016581 "NuRD complex" evidence=IEA] [GO:0033553 "rDNA
heterochromatin" evidence=IEA] [GO:0044732 "mitotic spindle pole
body" evidence=IEA] [GO:0005721 "centromeric heterochromatin"
evidence=IEA] [GO:0031934 "mating-type region heterochromatin"
evidence=IEA] [GO:0031933 "telomeric heterochromatin" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0016887 "ATPase
activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0000122 "negative regulation
of transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0030466 "chromatin silencing at silent mating-type cassette"
evidence=IEA] [GO:0000183 "chromatin silencing at rDNA"
evidence=IEA] [GO:0016584 "nucleosome positioning" evidence=IEA]
[GO:0030702 "chromatin silencing at centromere" evidence=IEA]
InterPro:IPR000014 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50016 PROSITE:PS51194
SMART:SM00091 SMART:SM00249 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0046872
GO:GO:0003677 EMBL:BN001307 GO:GO:0008270 GO:GO:0004871
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 GO:GO:0004386 InterPro:IPR019786 PROSITE:PS01359
EMBL:AACD01000029 InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
OrthoDB:EOG4GQTD1 RefSeq:XP_659560.1 ProteinModelPortal:Q5BBX4
EnsemblFungi:CADANIAT00008616 GeneID:2875239 KEGG:ani:AN1956.2
HOGENOM:HOG000192830 OMA:SFARVWA Uniprot:Q5BBX4
Length = 1443
Score = 973 (347.6 bits), Expect = 1.2e-100, Sum P(3) = 1.2e-100
Identities = 218/606 (35%), Positives = 344/606 (56%)
Query: 675 DGTREAFVKWTGLPYDECTWE-KLDEPALEKYSHLTDLFVQFERQTLKKDASEDELPRGK 733
D +A+VK+ GLPY++ WE D E ++ + + ++ ++ L +
Sbjct: 524 DNVSKAYVKFKGLPYEDAVWEVPPDRSNTEAWNDFKAAYADWAKKPFISTPNQISLQKHL 583
Query: 734 GDCQQSEIVALTEQPEELKGGALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACA 793
+ ++ + + QP + GG + +Q + LNWL W K +N ILADEMGLGKT+
Sbjct: 584 ANVRKQKFKSREAQPRIMTGGEIMDYQRDGLNWLYFKWFKQQNAILADEMGLGKTIQVIG 643
Query: 794 FISSLYCEFKAKLPCLVLVPLSTMPNWLAEFALWAPNLNVVEYHGCAKARAIIRQYEWHA 853
+++L + K P L++VP ST PNW E W P+L V Y+G + AR + +++E
Sbjct: 644 LLATLVQDHKC-WPFLIVVPNSTCPNWRKELKTWVPSLRAVTYYGSSLARKMAQEHEMFI 702
Query: 854 -SDPDNLNKKTSSYKFNVLLTTYEMILADSSH--LRGVPWEVLVVDEGHRXXXXXXXXXX 910
DPD + +V++T+YE ++ DS L +PW L+VDEG R
Sbjct: 703 RGDPD--------LRCHVVITSYETMVDDSCRKVLSRIPWAGLIVDEGQRLKSDKSQIYE 754
Query: 911 XXXXXXXQHRVLLTGTPLQNNIGEMYNLLNFLQPASFPSLSSFEEKFNDLTTTQKVEELK 970
+VL+TGTPLQNN E++NLL F + + EEK+ L+ + + EL
Sbjct: 755 GLSKMKFPFKVLMTGTPLQNNTKELFNLLQFCDQSK--NAEELEEKYGTLSK-ENIPELH 811
Query: 971 KLVAPHMLRRLKKDAMQNIPPKTERMVPVELSSIQAEYYRAMLTKNYQILRNIG------ 1024
+L+ P LRR K + +PP + +VPV +S +Q + Y+++L KN Q+++ I
Sbjct: 812 ELIRPFFLRRTKAQVLTFLPPVVQIIVPVTMSVLQKKLYKSILAKNTQLIKAIFQRNEED 871
Query: 1025 ---KGVAQQSMLNIVMQLRKVCNHPYLIP-GTEPDSGSVEFLHEMRIKASAKLTLLHSML 1080
K + ++ NI+MQLRK HP++ E + E H + A+ KL LL ML
Sbjct: 872 QPLKQTERHNLNNILMQLRKCLCHPFIFSKAIEERTDDPEVAHRNLVDAAGKLQLLELML 931
Query: 1081 KVLYKEGHRVLIFSQMTKLLDILEDYLNIEFGPKTYERVDGSVSVGDRQAAITRFNQDKS 1140
L GHRVL+FSQ + LD++ED+L+ G + R+DG ++ ++Q I +N + S
Sbjct: 932 PKLQARGHRVLVFSQFLENLDVMEDFLD-GLG-LPHRRLDGRMTSLEKQRMIDDYNAENS 989
Query: 1141 R-FVFLLSTRSCGLGINLATADTVIIYDSDFNPHADIQAMNRAHRIGQSKRLLVYRLVVR 1199
F FLLSTRS G+GINLATADTVII D DFNPH D+QA++RAHRIGQ ++LV++L++R
Sbjct: 990 PYFAFLLSTRSGGVGINLATADTVIIMDPDFNPHQDMQALSRAHRIGQKNKVLVFQLMIR 1049
Query: 1200 ASVEERILQLAKKKLMLDQLFVNKSGSQ----KEVEDILRWGTEELFNDSPGINGKDMGE 1255
S EE+I+Q+ +KK++LD + +++ ++ +++E ILR G + LF+D N D+
Sbjct: 1050 GSAEEKIMQIGRKKMVLDHVLIDRMAAEDDDGEDLESILRHGAKALFDDD---NSGDIIY 1106
Query: 1256 NNTSIE 1261
+ S++
Sbjct: 1107 TSESVD 1112
Score = 62 (26.9 bits), Expect = 1.2e-100, Sum P(3) = 1.2e-100
Identities = 15/48 (31%), Positives = 25/48 (52%)
Query: 585 KTSGSVAKRVQEPAVTESAQVKGKAVSYEFLVKWVGKSNIHNSWIPES 632
+ + VA R A +S ++ + E+L+KW KS H +W+P S
Sbjct: 413 EVNAMVAWRPLSTASKKSPKIS--ELDKEYLIKWKEKSYAHCTWMPGS 458
Score = 58 (25.5 bits), Expect = 1.2e-100, Sum P(3) = 1.2e-100
Identities = 16/56 (28%), Positives = 24/56 (42%)
Query: 78 CVICDLGGNL------LCCDSCPRTYHLQCLDPPLKR------IPNGKW--QCPKC 119
C +C + G+L + C C YH CL P R + + K+ QC +C
Sbjct: 257 CEVCSIEGDLPDKGPLVFCQGCTDAYHQACLGPRTAREHLVTKVASDKFILQCRRC 312
Score = 55 (24.4 bits), Expect = 2.5e-100, Sum P(3) = 2.5e-100
Identities = 15/35 (42%), Positives = 18/35 (51%)
Query: 86 NLLC-CDSCPRTYHLQCLDPPLKRIPNGKWQCPKC 119
NLL C +C R++H L RI N WQC C
Sbjct: 377 NLLFRCKACHRSFHFDHLRAG--RISN--WQCHDC 407
Score = 53 (23.7 bits), Expect = 1.1e-99, Sum P(3) = 1.1e-99
Identities = 12/36 (33%), Positives = 17/36 (47%)
Query: 661 WKQPQRVISLRSSK--DGTREAFVKWTGLPYDECTW 694
W+ P S +S K + +E +KW Y CTW
Sbjct: 420 WR-PLSTASKKSPKISELDKEYLIKWKEKSYAHCTW 454
Score = 40 (19.1 bits), Expect = 9.4e-99, Sum P(3) = 9.4e-99
Identities = 24/89 (26%), Positives = 36/89 (40%)
Query: 185 VKSLEKSLDS-SQVDVSCSTKPENTSAGVPVEGSSSCPNDDDEKQLNASPTDSLADTKFH 243
V+ E S +S S +D + + T+ P GS DD A T T+F
Sbjct: 95 VRYREPSCESESNIDKE-EDEGQETTCSPP--GSEL---DDSRPSRRAKKTKF---TEFF 145
Query: 244 PAEEVLPHSQVTKSEQNDEVPVEKHEKSS 272
A ++TKS+ +DE V + S
Sbjct: 146 GAVSSDDDGKLTKSDSSDEDVVAPRSRQS 174
>SGD|S000005831 [details] [associations]
symbol:ISW2 "ATP-dependent DNA translocase involved in
chromatin remodeling" species:4932 "Saccharomyces cerevisiae"
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA;IDA;IPI] [GO:0006338 "chromatin remodeling"
evidence=IEA;IGI;IMP;IPI] [GO:0016818 "hydrolase activity, acting
on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0031491 "nucleosome binding" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0060195 "negative
regulation of antisense RNA transcription" evidence=IGI]
[GO:0016584 "nucleosome positioning" evidence=IDA] [GO:0008623
"CHRAC" evidence=ISS;IPI] [GO:0046020 "negative regulation of
transcription from RNA polymerase II promoter by pheromones"
evidence=IMP] [GO:0006348 "chromatin silencing at telomere"
evidence=IMP] [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0016568 "chromatin modification" evidence=IEA] [GO:0000183
"chromatin silencing at rDNA" evidence=IMP] [GO:0015616 "DNA
translocase activity" evidence=IDA] [GO:0003697 "single-stranded
DNA binding" evidence=IDA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0006369
"termination of RNA polymerase II transcription" evidence=IGI]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000330
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR009057
InterPro:IPR015194 InterPro:IPR015195 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 PROSITE:PS51194 SMART:SM00490
SMART:SM00717 SGD:S000005831 GO:GO:0005524 EMBL:BK006948
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0006338 GO:GO:0003697
InterPro:IPR017884 PROSITE:PS51293 GO:GO:0000183 GO:GO:0006348
GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0031491 GO:GO:0043044 GO:GO:0016584
GO:GO:0008623 GO:GO:0006369 GO:GO:0046020 GO:GO:0060195
GO:GO:0015616 GeneTree:ENSGT00680000100002 HOGENOM:HOG000192862
SUPFAM:SSF101224 OrthoDB:EOG48SM27 EMBL:Z75212 PIR:S67208
RefSeq:NP_014948.1 ProteinModelPortal:Q08773 SMR:Q08773
DIP:DIP-6603N IntAct:Q08773 MINT:MINT-469536 STRING:Q08773
PaxDb:Q08773 PeptideAtlas:Q08773 PRIDE:Q08773 EnsemblFungi:YOR304W
GeneID:854480 KEGG:sce:YOR304W CYGD:YOR304w OMA:NEQSALS
NextBio:976792 Genevestigator:Q08773 GermOnline:YOR304W
Uniprot:Q08773
Length = 1120
Score = 964 (344.4 bits), Expect = 5.3e-99, Sum P(2) = 5.3e-99
Identities = 253/676 (37%), Positives = 372/676 (55%)
Query: 695 EKLDEPA--LEKYSHLT-DLFVQFERQTLKKDASE---DELPRGKGDCQQSEIVALTEQP 748
++LD A L K SH T + R+T K++ +E DE D Q +I ++E P
Sbjct: 120 KQLDSDANKLSK-SHSTVSSSSRHHRKTEKEEDAELMADE-EEEIVDTYQEDIF-VSESP 176
Query: 749 EELKGGALFPHQLEALNWLRKCWHKSK-NVILADEMGLGKTVSACAFISSLYCEFKAKLP 807
+K G L +Q++ LNWL H++K + ILADEMGLGKT+ +F+ L + + P
Sbjct: 177 SFVKSGKLRDYQVQGLNWLISL-HENKLSGILADEMGLGKTLQTISFLGYLRYVKQIEGP 235
Query: 808 CLVLVPLSTMPNWLAEFALWAPNLNVVEYHGCAKARA-IIRQYEWHASDPDNLNKKTSSY 866
L++VP ST+ NW EF W PN+NV+ HG RA I+R A
Sbjct: 236 FLIIVPKSTLDNWRREFLKWTPNVNVLVLHGDKDTRADIVRNIILEA------------- 282
Query: 867 KFNVLLTTYEMILADSSHLRGVPWEVLVVDEGHRXXXXXXXXXXXXXXXXXQHRVLLTGT 926
+F+VL+T+YEM++ + + L+ + W+ +V+DE HR ++R+L+TGT
Sbjct: 283 RFDVLITSYEMVIREKNALKRLAWQYIVIDEAHRIKNEQSALSQIIRLFYSKNRLLITGT 342
Query: 927 PLQNNIGEMYNLLNFLQPASFPSLSSFEEKFNDLTTTQK----VEELKKLVAPHMLRRLK 982
PLQNN+ E++ LLNFL P F F+E F + Q +++L ++ P +LRR+K
Sbjct: 343 PLQNNLHELWALLNFLLPDIFGDSELFDEWFEQNNSEQDQEIVIQQLHSVLNPFLLRRVK 402
Query: 983 KDAMQNIPPKTERMVPVELSSIQAEYYRAMLTKNYQILRN-IGKGVAQQSMLNIVMQLRK 1041
D +++ PK E V V ++ +Q ++Y+++L K+ + +GK + +LNIVMQLRK
Sbjct: 403 ADVEKSLLPKIETNVYVGMTDMQIQWYKSLLEKDIDAVNGAVGKREGKTRLLNIVMQLRK 462
Query: 1042 VCNHPYLIPGTEPDSGSVEFLHEMRIKASAKLTLLHSMLKVLYKEGHRVLIFSQMTKLLD 1101
CNHPYL G EP G E I S K+ +L +LK L ++G RVLIFSQM++LLD
Sbjct: 463 CCNHPYLFEGAEP--GPPYTTDEHLIFNSGKMIILDKLLKRLKEKGSRVLIFSQMSRLLD 520
Query: 1102 ILEDYLNIEFGPKTYERVDGSVSVGDRQAAITRFNQDKS-RFVFLLSTRSCGLGINLATA 1160
ILEDY F Y R+DGS S +R AI +N+ S +FVFLL+TR+ GLGINL TA
Sbjct: 521 ILEDYCY--FRDFEYCRIDGSTSHEERIEAIDEYNKPNSEKFVFLLTTRAGGLGINLVTA 578
Query: 1161 DTVIIYDSDFNPHADIQAMNRAHRIGQSKRLLVYRLVVRASVEERILQLAKKKLMLDQLF 1220
DTVI++DSD+NP AD+QAM+RAHRIGQ K++ VYR V ++EE++++ A +KL LDQL
Sbjct: 579 DTVILFDSDWNPQADLQAMDRAHRIGQKKQVHVYRFVTENAIEEKVIERAAQKLRLDQLV 638
Query: 1221 VNKSGSQKEVEDILRWGTEELFNDSPGINGKDMGENNTS---IEEAVRDLEQKHRKRGGG 1277
+ + +K L ++L D K+M E S ++ + D+ +K ++
Sbjct: 639 IQQGTGKKTAS--LGNSKDDLL-DMIQFGAKNMFEKKASKVTVDADIDDILKKGEQKTQE 695
Query: 1278 LGDVYQDKCTEGSTKIVWDENAIARLLDRSNLQSGSTDLAEGDLENDMLGSVKATEW-NE 1336
L YQ + K EN A + + Q S D K EW N
Sbjct: 696 LNAKYQSLGLDDLQKFNGIENQSAYEWNGKSFQKKSND--------------KVVEWINP 741
Query: 1337 ETTEDQAESPVAAVDD 1352
E + E +VDD
Sbjct: 742 SRRERRREQTTYSVDD 757
Score = 42 (19.8 bits), Expect = 5.3e-99, Sum P(2) = 5.3e-99
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 246 EEVLPHSQVTKSEQNDEVPVEKHEKSSTNGSS 277
EE ++ +KSE EV V+ + S +NGSS
Sbjct: 6 EEQRSDTKNSKSESPSEVLVDTLD-SKSNGSS 36
>SGD|S000000449 [details] [associations]
symbol:ISW1 "ATPase subunit of imitation-switch (ISWI) class
chromatin remodelers" species:4932 "Saccharomyces cerevisiae"
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0006369
"termination of RNA polymerase II transcription" evidence=IGI]
[GO:0034401 "regulation of transcription by chromatin organization"
evidence=IMP] [GO:0016887 "ATPase activity" evidence=IDA]
[GO:0031491 "nucleosome binding" evidence=IEA;IDA] [GO:0003677 "DNA
binding" evidence=IEA;IDA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IMP]
[GO:0030874 "nucleolar chromatin" evidence=IDA] [GO:0000182 "rDNA
binding" evidence=IDA] [GO:0006363 "termination of RNA polymerase I
transcription" evidence=IGI] [GO:0070870 "heterochromatin
maintenance involved in chromatin silencing" evidence=IGI;IMP]
[GO:0016587 "Isw1 complex" evidence=IPI] [GO:0006354 "DNA-dependent
transcription, elongation" evidence=IMP;IDA] [GO:0006338 "chromatin
remodeling" evidence=IEA;IGI;IMP;IPI] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA;IDA] [GO:0016818 "hydrolase activity, acting
on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=IEA] [GO:0001178 "regulation of transcriptional start site
selection at RNA polymerase II promoter" evidence=IGI] [GO:0016568
"chromatin modification" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0016584 "nucleosome positioning"
evidence=IGI;IMP] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 Pfam:PF00176 Pfam:PF00271 Pfam:PF09110
Pfam:PF09111 PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490
SMART:SM00717 SGD:S000000449 GO:GO:0005524 GO:GO:0006200
GO:GO:0045944 EMBL:BK006936 Gene3D:1.10.10.60 SUPFAM:SSF46689
GO:GO:0006338 InterPro:IPR017884 PROSITE:PS51293 GO:GO:0004386
GO:GO:0034401 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0031491 GO:GO:0043044 GO:GO:0016584
GO:GO:0006363 GO:GO:0006354 GO:GO:0006369
GeneTree:ENSGT00670000098110 GO:GO:0030874 GO:GO:0000182
GO:GO:0001178 GO:GO:0070870 GO:GO:0016587 PDB:2Y9Y PDB:2Y9Z
PDBsum:2Y9Y PDBsum:2Y9Z HOGENOM:HOG000192862 SUPFAM:SSF101224
EMBL:Z36114 PIR:S46122 RefSeq:NP_009804.1 ProteinModelPortal:P38144
SMR:P38144 DIP:DIP-6601N IntAct:P38144 MINT:MINT-614918
STRING:P38144 PaxDb:P38144 PeptideAtlas:P38144 EnsemblFungi:YBR245C
GeneID:852547 KEGG:sce:YBR245C CYGD:YBR245c OMA:LEMITHG
OrthoDB:EOG48SM27 EvolutionaryTrace:P38144 NextBio:971628
Genevestigator:P38144 GermOnline:YBR245C Uniprot:P38144
Length = 1129
Score = 909 (325.0 bits), Expect = 2.1e-98, Sum P(4) = 2.1e-98
Identities = 217/521 (41%), Positives = 311/521 (59%)
Query: 721 KKDASED-ELPRGK-GDCQQSEIVALTEQPEELKGGALFPHQLEALNWLRKCWHKSKNV- 777
K + ED EL + + D +S E P + G L P+Q++ +NWL HK+K
Sbjct: 160 KTEHEEDAELLKEEDSDDDESIEFQFRESPAYVNG-QLRPYQIQGVNWLVSL-HKNKIAG 217
Query: 778 ILADEMGLGKTVSACAFISSL-YCEFKAKLPCLVLVPLSTMPNWLAEFALWAPNLNVVEY 836
ILADEMGLGKT+ +F+ L Y E K P LV+ P ST+ NWL E W P++N
Sbjct: 218 ILADEMGLGKTLQTISFLGYLRYIE-KIPGPFLVIAPKSTLNNWLREINRWTPDVNAFIL 276
Query: 837 HGCAKARAIIRQYEWHASDPDNLNKKTSSYKFNVLLTTYEMILADSSHLRGVPWEVLVVD 896
G + RA + Q KK F+V++ +YE+I+ + S L+ + WE +++D
Sbjct: 277 QGDKEERAELIQ------------KKLLGCDFDVVIASYEIIIREKSPLKKINWEYIIID 324
Query: 897 EGHRXXXXXXXXXXXXXXXXXQHRVLLTGTPLQNNIGEMYNLLNFLQPASFPSLSSFEEK 956
E HR ++R+L+TGTPLQNN+ E++ LLNFL P F F++
Sbjct: 325 EAHRIKNEESMLSQVLREFTSRNRLLITGTPLQNNLHELWALLNFLLPDIFSDAQDFDDW 384
Query: 957 FNDLTTTQK----VEELKKLVAPHMLRRLKKDAMQNIPPKTERMVPVELSSIQAEYYRAM 1012
F+ +T + V++L ++ P +LRR+K D ++ PK E + V +SS+Q ++Y+ +
Sbjct: 385 FSSESTEEDQDKIVKQLHTVLQPFLLRRIKSDVETSLLPKKELNLYVGMSSMQKKWYKKI 444
Query: 1013 LTKNYQILRNI-GKGVAQQSMLNIVMQLRKVCNHPYLIPGTEPDSGSVEFLHEMRIKASA 1071
L K+ + G ++ +LNI+MQLRK CNHPYL G EP G E + +A
Sbjct: 445 LEKDLDAVNGSNGSKESKTRLLNIMMQLRKCCNHPYLFDGAEP--GPPYTTDEHLVYNAA 502
Query: 1072 KLTLLHSMLKVLYKEGHRVLIFSQMTKLLDILEDYLNIEFGPKTYERVDGSVSVGDRQAA 1131
KL +L +LK L +EG RVLIFSQM++LLDILEDY F Y R+DGS + DR A
Sbjct: 503 KLQVLDKLLKKLKEEGSRVLIFSQMSRLLDILEDYCY--FRNYEYCRIDGSTAHEDRIQA 560
Query: 1132 ITRFNQ-DKSRFVFLLSTRSCGLGINLATADTVIIYDSDFNPHADIQAMNRAHRIGQSKR 1190
I +N D +FVFLL+TR+ GLGINL +AD V++YDSD+NP AD+QAM+RAHRIGQ K+
Sbjct: 561 IDDYNAPDSKKFVFLLTTRAGGLGINLTSADVVVLYDSDWNPQADLQAMDRAHRIGQKKQ 620
Query: 1191 LLVYRLVVRASVEERILQLAKKKLMLDQLFV--NKSGSQKE 1229
+ V+RLV SVEE+IL+ A +KL LDQL + N++ +K+
Sbjct: 621 VKVFRLVTDNSVEEKILERATQKLRLDQLVIQQNRTSLKKK 661
Score = 48 (22.0 bits), Expect = 2.1e-98, Sum P(4) = 2.1e-98
Identities = 16/66 (24%), Positives = 33/66 (50%)
Query: 1260 IEEAVRDLEQKHRKRGGGLGDVYQDKCTEGSTKIVWDENAIARLLDRSNLQSGSTDL-AE 1318
+++A +D +K + G + + + D+ + E+ A++ D SN+ G+ L AE
Sbjct: 1063 LDDATKDRMKKEDENGKRIREEFADQTANEKENVDGVESKKAKIEDTSNV--GTEQLVAE 1120
Query: 1319 GDLEND 1324
EN+
Sbjct: 1121 KIPENE 1126
Score = 44 (20.5 bits), Expect = 2.1e-98, Sum P(4) = 2.1e-98
Identities = 17/57 (29%), Positives = 25/57 (43%)
Query: 499 ECKVTKECKGENAIDLLREDDKDSDPVAVNGKVQDESAVSTEDLGERNDKMVVEDAD 555
E K K+ K +D+L E+ + GK QD TE E + + ED+D
Sbjct: 124 ESKAAKDPKFRQVLDVLEENKANGKG---KGKHQDVRRRKTEH-EEDAELLKEEDSD 176
Score = 41 (19.5 bits), Expect = 2.1e-98, Sum P(4) = 2.1e-98
Identities = 13/35 (37%), Positives = 19/35 (54%)
Query: 1211 KKKLMLDQLFVNKSGSQKEVEDILR--WGTEELFN 1243
K+KL L +L VN S E E+ ++ W +E N
Sbjct: 852 KQKLELLKLSVNNSQPLTEEEEKMKADWESEGFTN 886
Score = 41 (19.5 bits), Expect = 1.1e-97, Sum P(4) = 1.1e-97
Identities = 13/39 (33%), Positives = 18/39 (46%)
Query: 1335 NEETTEDQAESPVAAVDDASAENSERKEENAVTGIEENE 1373
NE+ D ES A ++D S +E+ I ENE
Sbjct: 1091 NEKENVDGVESKKAKIEDTSNVGTEQL---VAEKIPENE 1126
Score = 40 (19.1 bits), Expect = 5.4e-98, Sum P(4) = 5.4e-98
Identities = 7/20 (35%), Positives = 13/20 (65%)
Query: 504 KECKGENAIDLLREDDKDSD 523
++ + E +LL+E+D D D
Sbjct: 159 RKTEHEEDAELLKEEDSDDD 178
>POMBASE|SPBP35G2.10 [details] [associations]
symbol:mit1 "SHREC complex subunit Mit1" species:4896
"Schizosaccharomyces pombe" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IMP]
[GO:0000183 "chromatin silencing at rDNA" evidence=IMP] [GO:0000790
"nuclear chromatin" evidence=IC] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=ISM] [GO:0005524 "ATP binding" evidence=ISM;IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005721 "centromeric
heterochromatin" evidence=IDA] [GO:0006338 "chromatin remodeling"
evidence=ISS] [GO:0006342 "chromatin silencing" evidence=IMP]
[GO:0008094 "DNA-dependent ATPase activity" evidence=ISM]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0016584
"nucleosome positioning" evidence=IMP] [GO:0016887 "ATPase
activity" evidence=IDA] [GO:0019787 "small conjugating protein
ligase activity" evidence=ISM] [GO:0030466 "chromatin silencing at
silent mating-type cassette" evidence=IMP] [GO:0030702 "chromatin
silencing at centromere" evidence=IMP] [GO:0031933 "telomeric
heterochromatin" evidence=IDA] [GO:0031934 "mating-type region
heterochromatin" evidence=IDA] [GO:0033553 "rDNA heterochromatin"
evidence=IDA] [GO:0044732 "mitotic spindle pole body" evidence=IDA]
[GO:0070824 "SHREC complex" evidence=IDA] InterPro:IPR001841
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50016
PROSITE:PS50089 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00490 PomBase:SPBP35G2.10 Prosite:PS00518 GO:GO:0005524
GO:GO:0044732 GO:GO:0046872 GO:GO:0003677 EMBL:CU329671
GO:GO:0008270 GenomeReviews:CU329671_GR GO:GO:0006338 GO:GO:0030466
GO:GO:0000122 GO:GO:0000790 GO:GO:0030702 GO:GO:0000183
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 GO:GO:0004003 InterPro:IPR019786 PROSITE:PS01359
GO:GO:0005721 GO:GO:0031934 InterPro:IPR016197 SUPFAM:SSF54160
HSSP:Q97XQ5 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0016584 GO:GO:0019787 GO:GO:0033553
GO:GO:0016581 GO:GO:0031933 RefSeq:NP_595385.1
ProteinModelPortal:Q9P793 STRING:Q9P793 EnsemblFungi:SPBP35G2.10.1
GeneID:2541336 KEGG:spo:SPBP35G2.10 OrthoDB:EOG4GQTD1
NextBio:20802445 Uniprot:Q9P793
Length = 1418
Score = 948 (338.8 bits), Expect = 3.0e-97, Sum P(3) = 3.0e-97
Identities = 242/638 (37%), Positives = 344/638 (53%)
Query: 680 AFVKWTGLPYDECTWEKLDEPALEKYSHLTDLFVQFERQTLKKDASEDELPRGKGDCQQS 739
AFV W GL Y WE P E + +++ L+ E + P +
Sbjct: 483 AFVSWRGLTYYMSNWEP---PPKETDRNRWKAWLKGYSDLLECLWIE-KAPTASINIDLP 538
Query: 740 EI-VALTEQPEELKGGALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSL 798
+ QP +KGG L P+QL+ LNWL W+ ILADEMGLGKTV +FIS L
Sbjct: 539 FTNLEWHSQPSFIKGGTLMPYQLKGLNWLYLRWYTHHPCILADEMGLGKTVQVISFISVL 598
Query: 799 YCEFKAKLPCLVLVPLSTMPNWLAEFALWAPNLNVVEYHGCAKARAIIRQYEW-HASDPD 857
+ K P LV+VP +T+ NW E WAP L + G K R+++R Y + DP
Sbjct: 599 FYRHKC-FPVLVIVPHATVANWERELKKWAPFLQINVLVGSEKNRSLVRDYRLINQKDP- 656
Query: 858 NLNKKTSSYKFNVLLTTYEMILADSSHLRGVPWEVLVVDEGHRXXXXXXXXXXXXXXXXX 917
K S++ VL+ + + + S LR W+VL+VDEG R
Sbjct: 657 ---KHVSTH---VLVISASNVEREISLLRKFQWKVLIVDEGQRLKNDQSSLFYYLSSVKS 710
Query: 918 QHRVLLTGTPLQNNIGEMYNLLNFLQPASFPSLSSFEEKFNDLTTTQKVEELKKLVAPHM 977
++LLTGTPLQNN+ E++NLL FL P + + E++++ + T+KV EL +++ P
Sbjct: 711 DFKLLLTGTPLQNNVRELFNLLQFLNPMKI-NAAELEKRYS-IIDTEKVTELHQILKPFF 768
Query: 978 LRRLKKDAMQNIPPKTERMVPVELSSIQAEYYRAMLTKNYQILRNI--------GKGVAQ 1029
LRR+K + + N P K E ++P+ ++ +Q Y+++L+KN +LRNI G
Sbjct: 769 LRRVKSEVLDNFPTKVEVIIPLSMTPVQKGLYKSILSKNLSLLRNITGYANTSSSGGQRT 828
Query: 1030 QSMLNIVMQLRKVCNHPYLI-PGTEPDSGSVEFLHEMRIKASAKLTLLHSMLKVLYKEGH 1088
S+ NI+MQLRK HPY+ P E + E +AS K +L ++ L GH
Sbjct: 829 TSLNNILMQLRKTLAHPYIYSPDIEDRNLPYELAMRSLEEASCKFLILRLLVPKLITRGH 888
Query: 1089 RVLIFSQMTKLLDILEDYLNIEFGPKTYERVDGSVSVGDRQAAITRFNQDKSRF-VFLLS 1147
R+L+FSQ + LDILED+ E+ Y R DG+ S +RQ+AI FN S FLLS
Sbjct: 889 RILLFSQFIQQLDILEDWF--EYKNIAYARFDGASSEMERQSAIDSFNAPNSELSCFLLS 946
Query: 1148 TRSCGLGINLATADTVIIYDSDFNPHADIQAMNRAHRIGQSKRLLVYRLVVRASVEERIL 1207
TR+ G+GINLA+ADTVII D DFNPH D+QA+ RAHR GQ K++LV+ L R SVEE+I+
Sbjct: 947 TRAGGVGINLASADTVIILDPDFNPHQDMQAIARAHRYGQKKKVLVFVLTTRDSVEEKII 1006
Query: 1208 QLAKKKLMLDQLFVNK----SGSQKEVEDILRWGTEELFNDSPGINGKDMGENNTSIEEA 1263
Q A+KKL+LD L V S+K++E ILR G LF ++ G + + N S+E
Sbjct: 1007 QNAQKKLVLDHLIVESLDQNHNSEKDLESILRHGARALFEEA-G-DEPSIKYNEYSVELL 1064
Query: 1264 VRDLEQKHRKRGGGLGDVYQDKCTEGSTKIVWDENAIA 1301
+ + E K D+ +K G + VWD I+
Sbjct: 1065 ISEAE-KQEDTSTDESDIKSNKF--GFFR-VWDNKHIS 1098
Score = 67 (28.6 bits), Expect = 3.0e-97, Sum P(3) = 3.0e-97
Identities = 24/77 (31%), Positives = 34/77 (44%)
Query: 84 GGNLLCCDSCPRTYHLQCLDPPLKRIPNGKWQCPKCTQKNDQLKPISNLDSISKRARSKI 143
G N + CD C YH C PL P+ + +Q+N + P+ SK ++ +
Sbjct: 227 GKNFVYCDHCSNVYHYDC--SPL---PSLNKETRNYSQQNGFICPLC-----SKNSKDVL 276
Query: 144 ITIKSQSGVKSSGADKV 160
SGV SSG D V
Sbjct: 277 CNTGFVSGV-SSGQDLV 292
Score = 54 (24.1 bits), Expect = 3.0e-97, Sum P(3) = 3.0e-97
Identities = 29/86 (33%), Positives = 41/86 (47%)
Query: 611 SYEFLVKWVGKSNIHNSWIPESQLK--VLAKRK----LENYKAKYGTT--VI----NICD 658
S E+ V+ GKS +H W S L LAK+K LEN A Y T +I I D
Sbjct: 392 SREYFVRSKGKSYLHCFWCSASWLAGISLAKKKNFDGLEN--ASYDATKPIIPVSYTIID 449
Query: 659 ERWKQPQRV-ISLRSSKDGTREAFVK 683
+ W R + R++K T++ +K
Sbjct: 450 KVWDVQYRSGKNARTAKYKTKKHQLK 475
Score = 50 (22.7 bits), Expect = 1.8e-95, Sum P(3) = 1.8e-95
Identities = 7/28 (25%), Positives = 19/28 (67%)
Query: 422 HISATATDDRHSDDFLVSENHNKILEEN 449
++++T D+ +D+L+ N +K+L ++
Sbjct: 85 YMTSTDKDEEEKNDYLLKSNGSKVLRDS 112
Score = 41 (19.5 bits), Expect = 7.0e-96, Sum P(3) = 7.0e-96
Identities = 8/18 (44%), Positives = 10/18 (55%)
Query: 677 TREAFVKWTGLPYDECTW 694
+RE FV+ G Y C W
Sbjct: 392 SREYFVRSKGKSYLHCFW 409
Score = 41 (19.5 bits), Expect = 1.1e-92, Sum P(2) = 1.1e-92
Identities = 6/20 (30%), Positives = 11/20 (55%)
Query: 96 TYHLQCLDPPLKRIPNGKWQ 115
TY++ +PP K +W+
Sbjct: 491 TYYMSNWEPPPKETDRNRWK 510
>CGD|CAL0005422 [details] [associations]
symbol:ISW2 species:5476 "Candida albicans" [GO:0001410
"chlamydospore formation" evidence=IMP] [GO:0030447 "filamentous
growth" evidence=IMP] [GO:0071280 "cellular response to copper ion"
evidence=IMP] [GO:0035690 "cellular response to drug" evidence=IMP]
[GO:0008623 "CHRAC" evidence=IEA] [GO:0060195 "negative regulation
of antisense RNA transcription" evidence=IEA] [GO:0006338
"chromatin remodeling" evidence=IEA] [GO:0000183 "chromatin
silencing at rDNA" evidence=IEA] [GO:0006369 "termination of RNA
polymerase II transcription" evidence=IEA] [GO:0046020 "negative
regulation of transcription from RNA polymerase II promoter by
pheromones" evidence=IEA] [GO:0006348 "chromatin silencing at
telomere" evidence=IEA] [GO:0016584 "nucleosome positioning"
evidence=IEA] [GO:0015616 "DNA translocase activity" evidence=IEA]
[GO:0003697 "single-stranded DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 CGD:CAL0005422 GO:GO:0005524
GO:GO:0001410 GO:GO:0003677 Gene3D:1.10.10.60 SUPFAM:SSF46689
GO:GO:0071280 GO:GO:0035690 InterPro:IPR017884 PROSITE:PS51293
GO:GO:0004386 EMBL:AACQ01000074 GO:GO:0030447 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0016585
GO:GO:0031491 GO:GO:0043044 SUPFAM:SSF101224 RefSeq:XP_716066.1
ProteinModelPortal:Q5A310 STRING:Q5A310 GeneID:3642235
KEGG:cal:CaO19.7401 Uniprot:Q5A310
Length = 1056
Score = 963 (344.1 bits), Expect = 1.0e-96, P = 1.0e-96
Identities = 235/605 (38%), Positives = 342/605 (56%)
Query: 717 RQTLKKDASEDELPRGKGDCQQSEIVALTEQPEELKGGALFPHQLEALNWLRKCWHKSKN 776
R+T K++ +E D + + +TE P +K G L +Q++ LNWL + +
Sbjct: 100 RKTEKEEDAELLQDEEHQDDEDHQHTVMTESPSYIKEGKLREYQIQGLNWLISLYENRLS 159
Query: 777 VILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLSTMPNWLAEFALWAPNLNVVEY 836
ILADEMGLGKT+ +F+ L P +V+VP ST+ NW EFA W P++NVV
Sbjct: 160 GILADEMGLGKTLQTISFLGYLRYIKHIDGPFIVIVPKSTLDNWRREFAKWTPDVNVVVL 219
Query: 837 HGCAKARAIIRQYEWHASDPDNLNKKTSSYKFNVLLTTYEMILADSSHLRGVPWEVLVVD 896
G + RA I + + + + KF+VL+T++EMIL + S L+ WE +VVD
Sbjct: 220 QGDKEQRASIIKDQLYTA------------KFDVLITSFEMILREKSALQKFRWEYIVVD 267
Query: 897 EGHRXXXXXXXXXXXXXXXXXQHRVLLTGTPLQNNIGEMYNLLNFLQPASFPSLSSFEEK 956
E HR ++R+L+TGTPLQNN+ E++ LLNFL P F F+E
Sbjct: 268 EAHRIKNEDSSLSKIIRLFYSRNRLLITGTPLQNNLHELWALLNFLLPDVFGDSDQFDEA 327
Query: 957 FN-----DLTTTQK-------VEELKKLVAPHMLRRLKKDAMQNIPPKTERMVPVELSSI 1004
F+ +L +K V EL +L++P +LRR+K D +++ PK E V + ++ +
Sbjct: 328 FDNQNSEELDEEEKQRRQDKAVSELHQLLSPFLLRRVKADVEKSLLPKIETNVYIGMTDM 387
Query: 1005 QAEYYRAMLTKNYQILRNI-GKGVAQQSMLNIVMQLRKVCNHPYLIPGTEPDSGSVEFLH 1063
Q E+Y+ +L K+ + + GK + +LNIVMQLRK CNHPYL G EP G
Sbjct: 388 QVEWYKRLLEKDIDAVNGVVGKREGKTRLLNIVMQLRKCCNHPYLFDGAEP--GPPYTTD 445
Query: 1064 EMRIKASAKLTLLHSMLKVLYKEGHRVLIFSQMTKLLDILEDYLNIEFGPKTYERVDGSV 1123
E + S K+ +L MLK EG RVLIFSQM+++LDILEDY F Y R+DGS
Sbjct: 446 EHLVYNSGKMIILDKMLKKFKAEGSRVLIFSQMSRVLDILEDYCY--FRDYEYCRIDGST 503
Query: 1124 SVGDRQAAITRFNQ-DKSRFVFLLSTRSCGLGINLATADTVIIYDSDFNPHADIQAMNRA 1182
S DR AI +N D +F+FLL+TR+ GLGINL +AD VI+YDSD+NP AD+QAM+RA
Sbjct: 504 SHEDRIEAIDEYNAPDSEKFIFLLTTRAGGLGINLTSADIVILYDSDWNPQADLQAMDRA 563
Query: 1183 HRIGQSKRLLVYRLVVRASVEERILQLAKKKLMLDQLFV---------NKSGSQKE-VED 1232
HRIGQ K++ V+R V ++EE++L+ A +KL LDQL + N G+ K+ +
Sbjct: 564 HRIGQKKQVKVFRFVTEKAIEEKVLERAAQKLRLDQLVIQQGRQMNSNNNVGNSKDDLIG 623
Query: 1233 ILRWGTEELFNDSPG-INGKDMGENNTSIEEAVRDLEQKHRKRGGGLGDVYQDKCTEGST 1291
+++ G +E+F +S G + D+ E E +L K K G L D+ T ++
Sbjct: 624 MIQHGAKEVFENSKGTMLDDDVEEILKRGAEKTAELNNKFNKLG--LDDI--QNFTSDAS 679
Query: 1292 KIVWD 1296
W+
Sbjct: 680 AYEWN 684
>UNIPROTKB|Q5A310 [details] [associations]
symbol:ISW2 "Putative uncharacterized protein ISW2"
species:237561 "Candida albicans SC5314" [GO:0001410 "chlamydospore
formation" evidence=IMP] [GO:0030447 "filamentous growth"
evidence=IMP] [GO:0035690 "cellular response to drug" evidence=IMP]
[GO:0071280 "cellular response to copper ion" evidence=IMP]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 CGD:CAL0005422 GO:GO:0005524
GO:GO:0001410 GO:GO:0003677 Gene3D:1.10.10.60 SUPFAM:SSF46689
GO:GO:0071280 GO:GO:0035690 InterPro:IPR017884 PROSITE:PS51293
GO:GO:0004386 EMBL:AACQ01000074 GO:GO:0030447 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0016585
GO:GO:0031491 GO:GO:0043044 SUPFAM:SSF101224 RefSeq:XP_716066.1
ProteinModelPortal:Q5A310 STRING:Q5A310 GeneID:3642235
KEGG:cal:CaO19.7401 Uniprot:Q5A310
Length = 1056
Score = 963 (344.1 bits), Expect = 1.0e-96, P = 1.0e-96
Identities = 235/605 (38%), Positives = 342/605 (56%)
Query: 717 RQTLKKDASEDELPRGKGDCQQSEIVALTEQPEELKGGALFPHQLEALNWLRKCWHKSKN 776
R+T K++ +E D + + +TE P +K G L +Q++ LNWL + +
Sbjct: 100 RKTEKEEDAELLQDEEHQDDEDHQHTVMTESPSYIKEGKLREYQIQGLNWLISLYENRLS 159
Query: 777 VILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLSTMPNWLAEFALWAPNLNVVEY 836
ILADEMGLGKT+ +F+ L P +V+VP ST+ NW EFA W P++NVV
Sbjct: 160 GILADEMGLGKTLQTISFLGYLRYIKHIDGPFIVIVPKSTLDNWRREFAKWTPDVNVVVL 219
Query: 837 HGCAKARAIIRQYEWHASDPDNLNKKTSSYKFNVLLTTYEMILADSSHLRGVPWEVLVVD 896
G + RA I + + + + KF+VL+T++EMIL + S L+ WE +VVD
Sbjct: 220 QGDKEQRASIIKDQLYTA------------KFDVLITSFEMILREKSALQKFRWEYIVVD 267
Query: 897 EGHRXXXXXXXXXXXXXXXXXQHRVLLTGTPLQNNIGEMYNLLNFLQPASFPSLSSFEEK 956
E HR ++R+L+TGTPLQNN+ E++ LLNFL P F F+E
Sbjct: 268 EAHRIKNEDSSLSKIIRLFYSRNRLLITGTPLQNNLHELWALLNFLLPDVFGDSDQFDEA 327
Query: 957 FN-----DLTTTQK-------VEELKKLVAPHMLRRLKKDAMQNIPPKTERMVPVELSSI 1004
F+ +L +K V EL +L++P +LRR+K D +++ PK E V + ++ +
Sbjct: 328 FDNQNSEELDEEEKQRRQDKAVSELHQLLSPFLLRRVKADVEKSLLPKIETNVYIGMTDM 387
Query: 1005 QAEYYRAMLTKNYQILRNI-GKGVAQQSMLNIVMQLRKVCNHPYLIPGTEPDSGSVEFLH 1063
Q E+Y+ +L K+ + + GK + +LNIVMQLRK CNHPYL G EP G
Sbjct: 388 QVEWYKRLLEKDIDAVNGVVGKREGKTRLLNIVMQLRKCCNHPYLFDGAEP--GPPYTTD 445
Query: 1064 EMRIKASAKLTLLHSMLKVLYKEGHRVLIFSQMTKLLDILEDYLNIEFGPKTYERVDGSV 1123
E + S K+ +L MLK EG RVLIFSQM+++LDILEDY F Y R+DGS
Sbjct: 446 EHLVYNSGKMIILDKMLKKFKAEGSRVLIFSQMSRVLDILEDYCY--FRDYEYCRIDGST 503
Query: 1124 SVGDRQAAITRFNQ-DKSRFVFLLSTRSCGLGINLATADTVIIYDSDFNPHADIQAMNRA 1182
S DR AI +N D +F+FLL+TR+ GLGINL +AD VI+YDSD+NP AD+QAM+RA
Sbjct: 504 SHEDRIEAIDEYNAPDSEKFIFLLTTRAGGLGINLTSADIVILYDSDWNPQADLQAMDRA 563
Query: 1183 HRIGQSKRLLVYRLVVRASVEERILQLAKKKLMLDQLFV---------NKSGSQKE-VED 1232
HRIGQ K++ V+R V ++EE++L+ A +KL LDQL + N G+ K+ +
Sbjct: 564 HRIGQKKQVKVFRFVTEKAIEEKVLERAAQKLRLDQLVIQQGRQMNSNNNVGNSKDDLIG 623
Query: 1233 ILRWGTEELFNDSPG-INGKDMGENNTSIEEAVRDLEQKHRKRGGGLGDVYQDKCTEGST 1291
+++ G +E+F +S G + D+ E E +L K K G L D+ T ++
Sbjct: 624 MIQHGAKEVFENSKGTMLDDDVEEILKRGAEKTAELNNKFNKLG--LDDI--QNFTSDAS 679
Query: 1292 KIVWD 1296
W+
Sbjct: 680 AYEWN 684
>UNIPROTKB|F1N8K8 [details] [associations]
symbol:CHD1 "Chromodomain-helicase-DNA-binding protein 1"
species:9031 "Gallus gallus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013
PROSITE:PS51194 SMART:SM00298 SMART:SM00490 Pfam:PF00385
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0004386
InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR023780 InterPro:IPR023779
PROSITE:PS00598 InterPro:IPR025260 Pfam:PF13907
GeneTree:ENSGT00560000076896 OMA:AETHENE EMBL:AADN02065411
EMBL:AADN02065412 EMBL:AADN02065413 IPI:IPI00588290
Ensembl:ENSGALT00000023601 ArrayExpress:F1N8K8 Uniprot:F1N8K8
Length = 1804
Score = 943 (337.0 bits), Expect = 7.5e-96, Sum P(6) = 7.5e-96
Identities = 250/685 (36%), Positives = 365/685 (53%)
Query: 574 ESTDKDVD--VGKK--TSGSVA-KRVQEPAVTESAQVKGKAVS-YEFLVKWVGKSNIHNS 627
E+ +K +D +G+K T S V+ + K K + ++L+KW G S+IHN+
Sbjct: 269 ETIEKFMDSRIGRKGATGASTTIYAVEADGDPNAGFEKSKELGEIQYLIKWKGWSHIHNT 328
Query: 628 WIPESQLK---VLAKRKLENYKAK-----------------YGTTVINICDERWKQPQRV 667
W E LK V +KL+NYK K Y + D+ KQ Q +
Sbjct: 329 WETEETLKQQNVKGMKKLDNYKKKDQETKRWLKNASPEDVEYYNCQQELTDDLHKQYQ-I 387
Query: 668 ISLRSSKDGTREAFVKWTGLPYDECTWEKL--DEPALEKYSHLTDLF-VQFERQTLKKDA 724
+ + + A G P C W+ L E + E + + F + + + +
Sbjct: 388 VERIIAHSNQKSA----AGYPDYYCKWQGLPYSECSWEDGALIAKKFQARIDEYFSRNQS 443
Query: 725 SEDELPRGKGDCQQSEIVALTEQPEELKGGA---LFPHQLEALNWLRKCWHKSKNVILAD 781
K Q+ VAL +QP + G L +QL L WL W K + ILAD
Sbjct: 444 KTTPFKDCKVLKQRPRFVALKKQPSYIGGHESLELRDYQLNGL-WLAHSWCKGNSCILAD 502
Query: 782 EMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLSTMPNWLAEFALWAPNLNVVEYHGCAK 841
EMGLGKT+ +F++ L+ E + P L++VPLST+ +W E WAP +N V Y G
Sbjct: 503 EMGLGKTIQTISFLNYLFHEHQLYGPFLLVVPLSTLTSWQREIQTWAPQMNAVVYLGDIT 562
Query: 842 ARAIIRQYEWHASDPDNLNKKTSSYKFNVLLTTYEMILADSSHLRGVPWEVLVVDEGHRX 901
+R +IR +EW ++ +T KFN+LLTTYE++L D S L G+ W + VDE HR
Sbjct: 563 SRNMIRTHEW-------MHPQTKRLKFNILLTTYEILLKDKSFLGGLNWAFIGVDEAHRL 615
Query: 902 XXXXXXXXXXXXXXXXQHRVLLTGTPLQNNIGEMYNLLNFLQPASFPSLSSFEEKFNDLT 961
+ + T I + LL+F+ P F S FEE+
Sbjct: 616 KNDDSLLYKTLIDLVT----IDSDTAPSCTIPQELWLLHFIMPEKFSSWEDFEEEHGK-G 670
Query: 962 TTQKVEELKKLVAPHMLRRLKKDAMQNIPPKTERMVPVELSSIQAEYYRAMLTKNYQILR 1021
L K + P +LRR+KKD +++P K E+++ +E+S++Q +YY+ +LT+NY+ L
Sbjct: 671 REYGYASLHKELEPFLLRRVKKDVEKSLPAKVEQILRMEMSALQKQYYKWILTRNYKALS 730
Query: 1022 NIGKGVAQQSMLNIVMQLRKVCNHPYLI--PGTEPDSGSVEFLHEMRIKASAKLTLLHSM 1079
KG + LNI+M+L+K CNH YLI P E L + I++S KL LL +
Sbjct: 731 KGSKG-STSGFLNIMMELKKCCNHCYLIKPPDDNEFYNKQEALQHL-IRSSGKLILLDKL 788
Query: 1080 LKVLYKEGHRVLIFSQMTKLLDILEDYLNIEFGPKTYERVDGSVSVGDRQAAITRFNQDK 1139
L L + G+RVLIFSQM ++LDIL +YL P ++R+DGS+ R+ A+ FN +
Sbjct: 789 LIRLRERGNRVLIFSQMVRMLDILAEYLKYRQFP--FQRLDGSIKGELRKQALDHFNAEG 846
Query: 1140 SR-FVFLLSTRSCGLGINLATADTVIIYDSDFNPHADIQAMNRAHRIGQSKRLLVYRLVV 1198
S F FLLSTR+ GLGINLA+ADTV+I+DSD+NP D+QA RAHRIGQ K++ +YRLV
Sbjct: 847 SEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVT 906
Query: 1199 RASVEERILQLAKKKLMLDQLFVNK 1223
+ SVEE IL+ AKKK++LD L + +
Sbjct: 907 KGSVEEDILERAKKKMVLDHLVIQR 931
Score = 59 (25.8 bits), Expect = 7.5e-96, Sum P(6) = 7.5e-96
Identities = 14/50 (28%), Positives = 28/50 (56%)
Query: 1226 SQKEVEDILRWGTEELFNDSPGINGKDMGENNTSIEEAVRDLEQKHRKRG 1275
+++E+ IL++G EELF + P G++ I+E ++ E + + G
Sbjct: 953 NKEELSAILKFGAEELFKE-P--EGEEQEPQEMDIDEILKRAETRENEPG 999
Score = 56 (24.8 bits), Expect = 1.4e-95, Sum P(4) = 1.4e-95
Identities = 43/171 (25%), Positives = 68/171 (39%)
Query: 148 SQSGVKSS--GADKVSQIFGNSILAR-KRSNKGKSVLALGVKSLEKSLDSSQVDVSCSTK 204
SQSG S G++ SQ S +R K+ + K A G + + S V S K
Sbjct: 45 SQSGSSDSESGSESGSQSESESDTSREKKQVQAKPPKADGSEFWKSSPSILAVQRSAVLK 104
Query: 205 PENTSAGVPVEGSSSCPNDDDEKQLNASPTDSLADTKF--HPAEE-VLPHSQVTKSEQND 261
+ SS +++D S DS ++TK H E+ + S +D
Sbjct: 105 KQQQQQKA---ASSDSGSEEDSSSSEDSADDSSSETKKKKHKDEDWQMSGSGSVSGTGSD 161
Query: 262 EVPVEKHEKSSTNGS-SGIKFVLAIGASERDRKRKPEV-KDEDSQKKLRVD 310
E +KSS S S + + + + + KP+ K QKK ++D
Sbjct: 162 SESEEDGDKSSCEESESDYEPKNKVKSRKPPSRIKPKSGKKSTGQKKRQLD 212
Score = 52 (23.4 bits), Expect = 7.5e-96, Sum P(6) = 7.5e-96
Identities = 26/104 (25%), Positives = 43/104 (41%)
Query: 1265 RDLEQKHRKRGGGLGDVYQDKCTEGSTKIVWDENAIARLLDRSNLQSGSTDLAEGDLEN- 1323
+DL +K +R G G+ + K K+ + D S S +D + + +N
Sbjct: 1308 KDLARKEAQRLAGAGNSKRRKTRNKKNKMKASKIKEEIKSDSSPQPSEKSDEDDDEEDNK 1367
Query: 1324 DMLGSVKATEWNEETTEDQAESPVA--AVDDASAENSERKE-EN 1364
D + SVK +T ++ E P + + E E KE EN
Sbjct: 1368 DEIVSVKHLHKKIKTEKENEEKPEPDIGIKKEAEEKRETKEKEN 1411
Score = 50 (22.7 bits), Expect = 7.5e-96, Sum P(6) = 7.5e-96
Identities = 14/58 (24%), Positives = 30/58 (51%)
Query: 5 SSSTSTMINRNWVLKRKRRKLPCGPGLSNGKEENLVTSESPRNTPSAKRRLKNEINAD 62
SS + + R+ VLK+++++ +G EE+ +SE + S++ + K + D
Sbjct: 90 SSPSILAVQRSAVLKKQQQQQKAASS-DSGSEEDSSSSEDSADDSSSETKKKKHKDED 146
Score = 46 (21.3 bits), Expect = 5.9e-95, Sum P(5) = 5.9e-95
Identities = 31/123 (25%), Positives = 49/123 (39%)
Query: 526 AVNGKVQDESAVSTEDLGERNDKMVVEDADVSLRDNEGLTVSEIHITCESTDKDVDVGKK 585
AV K Q + ++ D G D ED S D+ T + H KD D
Sbjct: 101 AVLKKQQQQQKAASSDSGSEEDSSSSED---SADDSSSETKKKKH-------KDEDWQMS 150
Query: 586 TSGSVAKRVQEPAVTESAQVKGKAVSYEFLVKWVGKSNIHNSWIPESQLKVLAKRKLENY 645
SGSV+ + +ES + K+ E + K+ + S P S++K + +K
Sbjct: 151 GSGSVSGTGSD---SESEEDGDKSSCEESESDYEPKNKV-KSRKPPSRIKPKSGKKSTGQ 206
Query: 646 KAK 648
K +
Sbjct: 207 KKR 209
Score = 40 (19.1 bits), Expect = 7.5e-96, Sum P(6) = 7.5e-96
Identities = 11/60 (18%), Positives = 24/60 (40%)
Query: 214 VEGSSSCPNDDDEKQLNASPTDSLADTKFHPAEEVLPHSQVTKSEQNDEVPVEKHEKSST 273
++ S +DD++ S + + + AEE S ++VP + ++ T
Sbjct: 211 LDSSEEEEDDDEDYDKRGSRRQATVNVSYKEAEETKTDSDDLLEVCGEDVPQTEEDEFET 270
Score = 40 (19.1 bits), Expect = 5.9e-95, Sum P(5) = 5.9e-95
Identities = 13/43 (30%), Positives = 21/43 (48%)
Query: 200 SCSTKPENTSAGVPVEGSSSCPNDDDEKQ--LNASPTDSLADT 240
S S +S+G +GSSS D + + S ++S +DT
Sbjct: 26 SASGSGSGSSSGSSSDGSSSQSGSSDSESGSESGSQSESESDT 68
Score = 39 (18.8 bits), Expect = 1.7e-94, Sum P(6) = 1.7e-94
Identities = 7/28 (25%), Positives = 17/28 (60%)
Query: 1336 EETTEDQAESPVAAVDDASAENSERKEE 1363
+E+T+ + E V++ +EN E+ ++
Sbjct: 1442 KESTQKEKEVKEEKVNEIKSENKEKSKK 1469
Score = 38 (18.4 bits), Expect = 7.5e-96, Sum P(6) = 7.5e-96
Identities = 12/41 (29%), Positives = 19/41 (46%)
Query: 119 CTQKNDQLKPISNLDSISKRARSKIITIKSQSGVKSSGADK 159
C + +P + + S +R IK +SG KS+G K
Sbjct: 173 CEESESDYEPKNKVKSRKPPSR-----IKPKSGKKSTGQKK 208
>TAIR|locus:2182978 [details] [associations]
symbol:CHR17 "chromatin remodeling factor17" species:3702
"Arabidopsis thaliana" [GO:0005634 "nucleus" evidence=ISM;IEA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=ISS]
[GO:0005829 "cytosol" evidence=RCA] [GO:0000226 "microtubule
cytoskeleton organization" evidence=RCA] [GO:0000911 "cytokinesis
by cell plate formation" evidence=RCA] [GO:0006259 "DNA metabolic
process" evidence=RCA] [GO:0006261 "DNA-dependent DNA replication"
evidence=RCA] [GO:0006306 "DNA methylation" evidence=RCA]
[GO:0006342 "chromatin silencing" evidence=RCA] [GO:0006346
"methylation-dependent chromatin silencing" evidence=RCA]
[GO:0007126 "meiosis" evidence=RCA] [GO:0008283 "cell
proliferation" evidence=RCA] [GO:0010413 "glucuronoxylan metabolic
process" evidence=RCA] [GO:0016246 "RNA interference" evidence=RCA]
[GO:0016572 "histone phosphorylation" evidence=RCA] [GO:0031047
"gene silencing by RNA" evidence=RCA] [GO:0033044 "regulation of
chromosome organization" evidence=RCA] [GO:0045492 "xylan
biosynthetic process" evidence=RCA] [GO:0051567 "histone H3-K9
methylation" evidence=RCA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0010228 "vegetative to reproductive phase
transition of meristem" evidence=IGI] InterPro:IPR000330
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR009057
InterPro:IPR015194 InterPro:IPR015195 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 PROSITE:PS51194 SMART:SM00490
SMART:SM00717 GO:GO:0005524 EMBL:CP002688 GO:GO:0003677
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0004386 GO:GO:0010228 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0016585 GO:GO:0031491
GO:GO:0043044 KO:K11654 OMA:MQRKWYK SUPFAM:SSF101224
IPI:IPI00547773 RefSeq:NP_850847.1 UniGene:At.19176
ProteinModelPortal:F4JY25 SMR:F4JY25 IntAct:F4JY25 PRIDE:F4JY25
EnsemblPlants:AT5G18620.2 GeneID:831980 KEGG:ath:AT5G18620
PhylomeDB:F4JY25 Uniprot:F4JY25
Length = 1072
Score = 906 (324.0 bits), Expect = 1.2e-95, Sum P(3) = 1.2e-95
Identities = 218/566 (38%), Positives = 324/566 (57%)
Query: 723 DASEDE--LPRGKGDCQQSEIVALTEQPEELKGGALFPHQLEALNWLRKCWHKSKNVILA 780
+ EDE L +G S L QP ++G L +QL LNWL + + N ILA
Sbjct: 160 EEEEDEECLKEEEGGIVGSGGTRLLTQPACIQG-KLRDYQLAGLNWLIRLYENGINGILA 218
Query: 781 DEMGLGKTVSACAFISSLYCEFKA-KLPCLVLVPLSTMPNWLAEFALWAPNLNVVEYHGC 839
DEMGLGKT+ + ++ L+ E++ P +V+ P ST+ NW+ E + P L V++ G
Sbjct: 219 DEMGLGKTLQTISLLAYLH-EYRGINGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGN 277
Query: 840 AKARAIIRQYEWHASDPDNLNKKTSSYKFNVLLTTYEMILADSSHLRGVPWEVLVVDEGH 899
+ R IR+ A KF++ +T++EM + + + LR W +++DE H
Sbjct: 278 PEERRHIREELLVAG------------KFDICVTSFEMAIKEKTTLRRFSWRYIIIDEAH 325
Query: 900 RXXXXXXXXXXXXXXXXXQHRVLLTGTPLQNNIGEMYNLLNFLQPASFPSLSSFEEKFN- 958
R +R+L+TGTPLQNN+ E++ LLNFL P F S +F+E F
Sbjct: 326 RIKNENSLLSKTMRLFSTNYRLLITGTPLQNNLHELWALLNFLLPEVFSSAETFDEWFQI 385
Query: 959 --DLTTTQKVEELKKLVAPHMLRRLKKDAMQNIPPKTERMVPVELSSIQAEYYRAMLTKN 1016
+ + V++L K++ P +LRRLK D + +PPK E ++ V +S +Q +YY+A+L K+
Sbjct: 386 SGENDQQEVVQQLHKVLRPFLLRRLKSDVEKGLPPKKETILKVGMSQMQKQYYKALLQKD 445
Query: 1017 YQILRNIGKGVAQQSMLNIVMQLRKVCNHPYLIPGTEPDSGSVEFLHEMRIKASAKLTLL 1076
+++ G+ ++ +LNI MQLRK CNHPYL G EP G + + + K+ LL
Sbjct: 446 LEVVNGGGE---RKRLLNIAMQLRKCCNHPYLFQGAEP--GPPYTTGDHLVTNAGKMVLL 500
Query: 1077 HSMLKVLYKEGHRVLIFSQMTKLLDILEDYLNIEFGPKTYERVDGSVSVGDRQAAITRFN 1136
+L L RVLIFSQMT+LLDILEDYL G + Y R+DG+ +R A+I +N
Sbjct: 501 DKLLPKLKDRDSRVLIFSQMTRLLDILEDYLMYR-GYQ-YCRIDGNTGGDERDASIEAYN 558
Query: 1137 QDKS-RFVFLLSTRSCGLGINLATADTVIIYDSDFNPHADIQAMNRAHRIGQSKRLLVYR 1195
+ S +FVFLLSTR+ GLGINLATAD VI+YDSD+NP D+QA +RAHRIGQ K + V+R
Sbjct: 559 KPGSEKFVFLLSTRAGGLGINLATADVVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFR 618
Query: 1196 LVVRASVEERILQLAKKKLMLDQLFVNKS--GSQKEV--EDIL---RWGTEELFNDSPG- 1247
++E ++++ A KKL LD L + + QK V +++L R+G E +F+
Sbjct: 619 FCTENAIEAKVIERAYKKLALDALVIQQGRLAEQKTVNKDELLQMVRYGAEMVFSSKDST 678
Query: 1248 INGKDMGENNTSIEEAVRDLEQKHRK 1273
I +D+ EEA +L+ K +K
Sbjct: 679 ITDEDIDRIIAKGEEATAELDAKMKK 704
Score = 58 (25.5 bits), Expect = 1.2e-95, Sum P(3) = 1.2e-95
Identities = 22/100 (22%), Positives = 47/100 (47%)
Query: 185 VKSLEKSLDSSQVDVSCSTKPENTSAGVPVEGSSSCPNDDDEK-QLNASPTDSLADTKFH 243
++++ +S S + DV+ P + VPVE + +D+EK +++ L + +
Sbjct: 36 LEAVARSAGSDEEDVAPDEAPVSDDEVVPVEDDAEEDEEDEEKAEISKREKARLKEMQKM 95
Query: 244 PAEEVLPHSQVTKSEQNDEVPVEKHEKSSTNGSSGIKFVL 283
+++ Q+ S QN + + + K G IK++L
Sbjct: 96 KKQKI---QQILDS-QNASIDADMNNK----GKGRIKYLL 127
Score = 51 (23.0 bits), Expect = 5.0e-93, Sum P(2) = 5.0e-93
Identities = 26/100 (26%), Positives = 44/100 (44%)
Query: 515 LREDDKDSDPVAVNGKVQDESAVSTEDLGERNDKMV-VEDADVSLRDNEGLTVSEIHITC 573
+ EDD + + VA + DE V+ ++ +D++V VED D D E +EI
Sbjct: 29 VEEDDDELEAVARSAG-SDEEDVAPDEAPVSDDEVVPVED-DAE-EDEEDEEKAEISKRE 85
Query: 574 ESTDKDVDVGKKTSGSVAKRVQEPAVTESAQVKGKA-VSY 612
++ K++ KK Q ++ KGK + Y
Sbjct: 86 KARLKEMQKMKKQKIQQILDSQNASIDADMNNKGKGRIKY 125
Score = 41 (19.5 bits), Expect = 7.2e-94, Sum P(3) = 7.2e-94
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 530 KVQDESAVSTEDLGERNDKMVVEDADVSL 558
+V + A S+E+ + ND+ VE+ D L
Sbjct: 8 EVSSDEAYSSEEEEQVNDQANVEEDDDEL 36
Score = 37 (18.1 bits), Expect = 1.2e-95, Sum P(3) = 1.2e-95
Identities = 6/10 (60%), Positives = 8/10 (80%)
Query: 476 DEECMKNDIG 485
DEEC+K + G
Sbjct: 164 DEECLKEEEG 173
Score = 37 (18.1 bits), Expect = 7.2e-94, Sum P(3) = 7.2e-94
Identities = 10/33 (30%), Positives = 17/33 (51%)
Query: 720 LKKDASEDELPRGKGDCQQSEIVALTEQPEELK 752
++ DA EDE K + + E L E +++K
Sbjct: 65 VEDDAEEDEEDEEKAEISKREKARLKEM-QKMK 96
>GENEDB_PFALCIPARUM|PF11_0053 [details] [associations]
symbol:PF11_0053 "PfSNF2L" species:5833
"Plasmodium falciparum" [GO:0006338 "chromatin remodeling"
evidence=ISS] [GO:0008094 "DNA-dependent ATPase activity"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0008026 "ATP-dependent helicase
activity" evidence=ISS] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR009057 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0006355 GO:GO:0003677
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0006338 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0016585 GO:GO:0008026
EMBL:AE014186 GO:GO:0008094 KO:K01509 RefSeq:XP_001347729.1
ProteinModelPortal:Q8IIW0 IntAct:Q8IIW0 MINT:MINT-1585538
EnsemblProtists:PF11_0053:mRNA GeneID:810605 KEGG:pfa:PF11_0053
EuPathDB:PlasmoDB:PF3D7_1104200 HOGENOM:HOG000282197
ProtClustDB:CLSZ2444952 Uniprot:Q8IIW0
Length = 1426
Score = 956 (341.6 bits), Expect = 4.8e-95, Sum P(3) = 4.8e-95
Identities = 232/614 (37%), Positives = 339/614 (55%)
Query: 735 DCQQSEIVALTEQPEELKGGALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAF 794
D + + + +QP + G + P+QLE LNWL + + N ILADEMGLGKT+ +
Sbjct: 302 DANEEDEAIILKQPMNING-TMKPYQLEGLNWLYQLYRFKINGILADEMGLGKTLQTISL 360
Query: 795 ISSLYCEFKAKLPCLVLVPLSTMPNWLAEFALWAPNLNVVEYHGCAKARAIIRQYEWHAS 854
+ L K +++ P ST+ NW E W + +Y+G R
Sbjct: 361 LCYLRFNKNIKKKSIIICPRSTLDNWYEEIKKWCTPMKAFKYYGNKDQRK---------- 410
Query: 855 DPDNLNKKTSSYKFNVLLTTYEMILADSSHLRGVPWEVLVVDEGHRXXXXXXXXXXXXXX 914
LN+ F+VLLTTYE+++ D S L + W LV+DE HR
Sbjct: 411 ---ELNRNLLHSDFDVLLTTYEIVIKDKSALYDIDWFFLVIDEAHRIKNEKSVLSSSVRF 467
Query: 915 XXXQHRVLLTGTPLQNNIGEMYNLLNFLQPASFPSLSSFEEKFN-------DLTTTQKVE 967
++R+L+TGTPL NN+ E+++LLNFL P F + F+ FN D ++ +
Sbjct: 468 LRSENRLLITGTPLHNNLKELWSLLNFLMPKIFDNSEEFDNLFNISKISTNDNKQSEIIT 527
Query: 968 ELKKLVAPHMLRRLKKDAMQNIPPKTERMVPVELSSIQAEYYRAMLTKNYQILRNIGKGV 1027
+L ++ P MLRRLK + Q++PPK E + V +S +Q + Y +L+KN +L N G
Sbjct: 528 QLHTILKPFMLRRLKVEVEQSLPPKREIYIFVGMSKLQKKLYSDILSKNIDVL-NAMTGS 586
Query: 1028 AQQSMLNIVMQLRKVCNHPYLIPGTEPDSGSVEFLHEMRIKASAKLTLLHSMLKVLYKEG 1087
Q MLNI+MQLRK CNHPYL G E + +E H I+ S K++LL +L L KE
Sbjct: 587 KNQ-MLNILMQLRKCCNHPYLFDGIE-EPPYIEGNH--LIETSGKMSLLDKLLPRLKKEN 642
Query: 1088 HRVLIFSQMTKLLDILEDYLNIEFGPKTYERVDGSVSVGDRQAAITRFNQDKSR-FVFLL 1146
RVL+FSQMT+LLDI++DY + P Y R+DGS +RQ I +FN+ S+ F+FLL
Sbjct: 643 SRVLLFSQMTRLLDIIDDYCRWKNYP--YLRIDGSTPGDERQVRINQFNEPNSKYFIFLL 700
Query: 1147 STRSCGLGINLATADTVIIYDSDFNPHADIQAMNRAHRIGQSKRLLVYRLVVRASVEERI 1206
STR+ G+GINL TAD VI++DSD+NP DIQAM+RAHRIGQ KR++VYR V + SVEE+I
Sbjct: 701 STRAGGIGINLTTADIVILFDSDYNPQMDIQAMDRAHRIGQKKRVIVYRFVTQNSVEEKI 760
Query: 1207 LQLAKKKLMLDQLFVNKS---------GSQKEVEDILRWGTEELFN--DSPGINGKDMGE 1255
++ A KKL LD L + K +++E+ DIL +G E++ D I+ +D+
Sbjct: 761 VERAAKKLKLDSLIIQKGKLNLNSAKENNKQELHDILNFGAPEVYKTQDISSISDEDIDI 820
Query: 1256 NNTSIEEAVRDLEQKHRKRGGGLGDVYQDKCTEGSTKIVWD--ENAIARLLDRSNLQ-SG 1312
E+ ++E+K K + D+ + +G + D + A D + SG
Sbjct: 821 ILADAEKRTIEIEKK-LKNLENIFDL-TNISLDGGLNMYNDLEKEASEESTDEEDSSGSG 878
Query: 1313 STDLAEGDLENDML 1326
+ EG ND++
Sbjct: 879 EETILEGSGNNDIV 892
Score = 46 (21.3 bits), Expect = 4.8e-95, Sum P(3) = 4.8e-95
Identities = 27/111 (24%), Positives = 50/111 (45%)
Query: 415 DDTSSSCHISATATDD--RHSDDFLVSENHNKILEENLACDTDLDAEVTENL-AELSPNV 471
DD+++ S DD H+DD + NHN+ + N D + + N +E PN
Sbjct: 196 DDSNNHNDDSNNHNDDSNNHNDD---NNNHNE--DNNNHNDDNNNHNDDNNYNSEEKPNY 250
Query: 472 IRSSDEECM-KNDIGVDRIQVYRRSVTKECKVTKECKGENAIDLLREDDKD 521
++ E+ + + +++ R + + K +K KG LL E ++D
Sbjct: 251 LQEKLEQLLAQTKRYTEKLAGQRLKMNAQMKSSK--KGRC---LLTEKEED 296
Score = 45 (20.9 bits), Expect = 4.3e-94, Sum P(2) = 4.3e-94
Identities = 23/114 (20%), Positives = 47/114 (41%)
Query: 441 NHNKILEENLACDTDLDAEVTENLAELSPNVIRSSD-EECMK----NDIGVDRIQV--YR 493
NH+K + N+ DT + + + + L N S + MK N+I D + +R
Sbjct: 100 NHDKNVHRNIGNDTHVSYD-DKRKSYLDNNEENSEQMNDNMKKRKLNEISYDNNEEDEFR 158
Query: 494 RSVTKECKVTKECKGENAIDLLREDDKDSDPVAVNGKVQDESAVSTEDLGERND 547
++ + KG + + +++ + + + N D+S +D ND
Sbjct: 159 NKKDDSMEMNDKEKGSTNMSTINDNNNNHNDDSNNHN--DDSNNHNDDSNNHND 210
Score = 44 (20.5 bits), Expect = 4.8e-95, Sum P(3) = 4.8e-95
Identities = 12/56 (21%), Positives = 28/56 (50%)
Query: 222 NDDDEKQLNASPTDSLADTKFHPAEEVLPHSQVTKSEQNDEVPVEKHEKSSTNGSS 277
N+++ +Q+N D++ K + +++++D + + EK STN S+
Sbjct: 128 NEENSEQMN----DNMKKRKLNEISYDNNEEDEFRNKKDDSMEMNDKEKGSTNMST 179
>UNIPROTKB|Q8IIW0 [details] [associations]
symbol:PF11_0053 "PfSNF2L" species:36329 "Plasmodium
falciparum 3D7" [GO:0006338 "chromatin remodeling" evidence=ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=ISS] [GO:0008026 "ATP-dependent helicase activity"
evidence=ISS] [GO:0008094 "DNA-dependent ATPase activity"
evidence=ISS] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR009057 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0006355 GO:GO:0003677
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0006338 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0016585 GO:GO:0008026
EMBL:AE014186 GO:GO:0008094 KO:K01509 RefSeq:XP_001347729.1
ProteinModelPortal:Q8IIW0 IntAct:Q8IIW0 MINT:MINT-1585538
EnsemblProtists:PF11_0053:mRNA GeneID:810605 KEGG:pfa:PF11_0053
EuPathDB:PlasmoDB:PF3D7_1104200 HOGENOM:HOG000282197
ProtClustDB:CLSZ2444952 Uniprot:Q8IIW0
Length = 1426
Score = 956 (341.6 bits), Expect = 4.8e-95, Sum P(3) = 4.8e-95
Identities = 232/614 (37%), Positives = 339/614 (55%)
Query: 735 DCQQSEIVALTEQPEELKGGALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAF 794
D + + + +QP + G + P+QLE LNWL + + N ILADEMGLGKT+ +
Sbjct: 302 DANEEDEAIILKQPMNING-TMKPYQLEGLNWLYQLYRFKINGILADEMGLGKTLQTISL 360
Query: 795 ISSLYCEFKAKLPCLVLVPLSTMPNWLAEFALWAPNLNVVEYHGCAKARAIIRQYEWHAS 854
+ L K +++ P ST+ NW E W + +Y+G R
Sbjct: 361 LCYLRFNKNIKKKSIIICPRSTLDNWYEEIKKWCTPMKAFKYYGNKDQRK---------- 410
Query: 855 DPDNLNKKTSSYKFNVLLTTYEMILADSSHLRGVPWEVLVVDEGHRXXXXXXXXXXXXXX 914
LN+ F+VLLTTYE+++ D S L + W LV+DE HR
Sbjct: 411 ---ELNRNLLHSDFDVLLTTYEIVIKDKSALYDIDWFFLVIDEAHRIKNEKSVLSSSVRF 467
Query: 915 XXXQHRVLLTGTPLQNNIGEMYNLLNFLQPASFPSLSSFEEKFN-------DLTTTQKVE 967
++R+L+TGTPL NN+ E+++LLNFL P F + F+ FN D ++ +
Sbjct: 468 LRSENRLLITGTPLHNNLKELWSLLNFLMPKIFDNSEEFDNLFNISKISTNDNKQSEIIT 527
Query: 968 ELKKLVAPHMLRRLKKDAMQNIPPKTERMVPVELSSIQAEYYRAMLTKNYQILRNIGKGV 1027
+L ++ P MLRRLK + Q++PPK E + V +S +Q + Y +L+KN +L N G
Sbjct: 528 QLHTILKPFMLRRLKVEVEQSLPPKREIYIFVGMSKLQKKLYSDILSKNIDVL-NAMTGS 586
Query: 1028 AQQSMLNIVMQLRKVCNHPYLIPGTEPDSGSVEFLHEMRIKASAKLTLLHSMLKVLYKEG 1087
Q MLNI+MQLRK CNHPYL G E + +E H I+ S K++LL +L L KE
Sbjct: 587 KNQ-MLNILMQLRKCCNHPYLFDGIE-EPPYIEGNH--LIETSGKMSLLDKLLPRLKKEN 642
Query: 1088 HRVLIFSQMTKLLDILEDYLNIEFGPKTYERVDGSVSVGDRQAAITRFNQDKSR-FVFLL 1146
RVL+FSQMT+LLDI++DY + P Y R+DGS +RQ I +FN+ S+ F+FLL
Sbjct: 643 SRVLLFSQMTRLLDIIDDYCRWKNYP--YLRIDGSTPGDERQVRINQFNEPNSKYFIFLL 700
Query: 1147 STRSCGLGINLATADTVIIYDSDFNPHADIQAMNRAHRIGQSKRLLVYRLVVRASVEERI 1206
STR+ G+GINL TAD VI++DSD+NP DIQAM+RAHRIGQ KR++VYR V + SVEE+I
Sbjct: 701 STRAGGIGINLTTADIVILFDSDYNPQMDIQAMDRAHRIGQKKRVIVYRFVTQNSVEEKI 760
Query: 1207 LQLAKKKLMLDQLFVNKS---------GSQKEVEDILRWGTEELFN--DSPGINGKDMGE 1255
++ A KKL LD L + K +++E+ DIL +G E++ D I+ +D+
Sbjct: 761 VERAAKKLKLDSLIIQKGKLNLNSAKENNKQELHDILNFGAPEVYKTQDISSISDEDIDI 820
Query: 1256 NNTSIEEAVRDLEQKHRKRGGGLGDVYQDKCTEGSTKIVWD--ENAIARLLDRSNLQ-SG 1312
E+ ++E+K K + D+ + +G + D + A D + SG
Sbjct: 821 ILADAEKRTIEIEKK-LKNLENIFDL-TNISLDGGLNMYNDLEKEASEESTDEEDSSGSG 878
Query: 1313 STDLAEGDLENDML 1326
+ EG ND++
Sbjct: 879 EETILEGSGNNDIV 892
Score = 46 (21.3 bits), Expect = 4.8e-95, Sum P(3) = 4.8e-95
Identities = 27/111 (24%), Positives = 50/111 (45%)
Query: 415 DDTSSSCHISATATDD--RHSDDFLVSENHNKILEENLACDTDLDAEVTENL-AELSPNV 471
DD+++ S DD H+DD + NHN+ + N D + + N +E PN
Sbjct: 196 DDSNNHNDDSNNHNDDSNNHNDD---NNNHNE--DNNNHNDDNNNHNDDNNYNSEEKPNY 250
Query: 472 IRSSDEECM-KNDIGVDRIQVYRRSVTKECKVTKECKGENAIDLLREDDKD 521
++ E+ + + +++ R + + K +K KG LL E ++D
Sbjct: 251 LQEKLEQLLAQTKRYTEKLAGQRLKMNAQMKSSK--KGRC---LLTEKEED 296
Score = 45 (20.9 bits), Expect = 4.3e-94, Sum P(2) = 4.3e-94
Identities = 23/114 (20%), Positives = 47/114 (41%)
Query: 441 NHNKILEENLACDTDLDAEVTENLAELSPNVIRSSD-EECMK----NDIGVDRIQV--YR 493
NH+K + N+ DT + + + + L N S + MK N+I D + +R
Sbjct: 100 NHDKNVHRNIGNDTHVSYD-DKRKSYLDNNEENSEQMNDNMKKRKLNEISYDNNEEDEFR 158
Query: 494 RSVTKECKVTKECKGENAIDLLREDDKDSDPVAVNGKVQDESAVSTEDLGERND 547
++ + KG + + +++ + + + N D+S +D ND
Sbjct: 159 NKKDDSMEMNDKEKGSTNMSTINDNNNNHNDDSNNHN--DDSNNHNDDSNNHND 210
Score = 44 (20.5 bits), Expect = 4.8e-95, Sum P(3) = 4.8e-95
Identities = 12/56 (21%), Positives = 28/56 (50%)
Query: 222 NDDDEKQLNASPTDSLADTKFHPAEEVLPHSQVTKSEQNDEVPVEKHEKSSTNGSS 277
N+++ +Q+N D++ K + +++++D + + EK STN S+
Sbjct: 128 NEENSEQMN----DNMKKRKLNEISYDNNEEDEFRNKKDDSMEMNDKEKGSTNMST 179
>UNIPROTKB|F1NP27 [details] [associations]
symbol:CHD1 "Chromodomain-helicase-DNA-binding protein 1"
species:9031 "Gallus gallus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013
PROSITE:PS51194 SMART:SM00298 SMART:SM00490 Pfam:PF00385
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0004386
InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR023780 InterPro:IPR023779
PROSITE:PS00598 InterPro:IPR025260 Pfam:PF13907
GeneTree:ENSGT00560000076896 EMBL:AADN02065411 EMBL:AADN02065412
EMBL:AADN02065413 IPI:IPI00591777 Ensembl:ENSGALT00000024661
ArrayExpress:F1NP27 Uniprot:F1NP27
Length = 1803
Score = 937 (334.9 bits), Expect = 6.0e-95, Sum P(6) = 6.0e-95
Identities = 248/685 (36%), Positives = 364/685 (53%)
Query: 574 ESTDKDVD--VGKK--TSGSVA-KRVQEPAVTESAQVKGKAVS-YEFLVKWVGKSNIHNS 627
E+ +K +D +G+K T S V+ + K K + ++L+KW G S+IHN+
Sbjct: 269 ETIEKFMDSRIGRKGATGASTTIYAVEADGDPNAGFEKSKELGEIQYLIKWKGWSHIHNT 328
Query: 628 WIPESQLK---VLAKRKLENYKAK-----------------YGTTVINICDERWKQPQRV 667
W E LK V +KL+NYK K Y + D+ KQ Q +
Sbjct: 329 WETEETLKQQNVKGMKKLDNYKKKDQETKRWLKNASPEDVEYYNCQQELTDDLHKQYQ-I 387
Query: 668 ISLRSSKDGTREAFVKWTGLPYDECTWEKL--DEPALEKYSHLTDLF-VQFERQTLKKDA 724
+ + + A G P C W+ L E + E + + F + + + +
Sbjct: 388 VERIIAHSNQKSA----AGYPDYYCKWQGLPYSECSWEDGALIAKKFQARIDEYFSRNQS 443
Query: 725 SEDELPRGKGDCQQSEIVALTEQPEELKGGA---LFPHQLEALNWLRKCWHKSKNVILAD 781
K Q+ VAL +QP + G L +QL L WL W K + ILAD
Sbjct: 444 KTTPFKDCKVLKQRPRFVALKKQPSYIGGHESLELRDYQLNGL-WLAHSWCKGNSCILAD 502
Query: 782 EMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLSTMPNWLAEFALWAPNLNVVEYHGCAK 841
EMGLGKT+ +F++ L+ E + P L++VPLST+ +W E WAP +N V Y G
Sbjct: 503 EMGLGKTIQTISFLNYLFHEHQLYGPFLLVVPLSTLTSWQREIQTWAPQMNAVVYLGDIT 562
Query: 842 ARAIIRQYEWHASDPDNLNKKTSSYKFNVLLTTYEMILADSSHLRGVPWEVLVVDEGHRX 901
+R +IR +EW ++ +T KFN+LLTTYE++L D S L G+ W + VDE HR
Sbjct: 563 SRNMIRTHEW-------MHPQTKRLKFNILLTTYEILLKDKSFLGGLNWAFIGVDEAHRL 615
Query: 902 XXXXXXXXXXXXXXXXQHRVLLTGTPLQNNIGEMYNLLNFLQPASFPSLSSFEEKFNDLT 961
+ E+++L +F+ P F S FEE+
Sbjct: 616 KNDDSLLYKTLIDLVTIDSDTAPSCTIPQ---ELWSL-HFIMPEKFSSWEDFEEEHGK-G 670
Query: 962 TTQKVEELKKLVAPHMLRRLKKDAMQNIPPKTERMVPVELSSIQAEYYRAMLTKNYQILR 1021
L K + P +LRR+KKD +++P K E+++ +E+S++Q +YY+ +LT+NY+ L
Sbjct: 671 REYGYASLHKELEPFLLRRVKKDVEKSLPAKVEQILRMEMSALQKQYYKWILTRNYKALS 730
Query: 1022 NIGKGVAQQSMLNIVMQLRKVCNHPYLI--PGTEPDSGSVEFLHEMRIKASAKLTLLHSM 1079
KG + LNI+M+L+K CNH YLI P E L + I++S KL LL +
Sbjct: 731 KGSKG-STSGFLNIMMELKKCCNHCYLIKPPDDNEFYNKQEALQHL-IRSSGKLILLDKL 788
Query: 1080 LKVLYKEGHRVLIFSQMTKLLDILEDYLNIEFGPKTYERVDGSVSVGDRQAAITRFNQDK 1139
L L + G+RVLIFSQM ++LDIL +YL P ++R+DGS+ R+ A+ FN +
Sbjct: 789 LIRLRERGNRVLIFSQMVRMLDILAEYLKYRQFP--FQRLDGSIKGELRKQALDHFNAEG 846
Query: 1140 SR-FVFLLSTRSCGLGINLATADTVIIYDSDFNPHADIQAMNRAHRIGQSKRLLVYRLVV 1198
S F FLLSTR+ GLGINLA+ADTV+I+DSD+NP D+QA RAHRIGQ K++ +YRLV
Sbjct: 847 SEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVT 906
Query: 1199 RASVEERILQLAKKKLMLDQLFVNK 1223
+ SVEE IL+ AKKK++LD L + +
Sbjct: 907 KGSVEEDILERAKKKMVLDHLVIQR 931
Score = 59 (25.8 bits), Expect = 6.0e-95, Sum P(6) = 6.0e-95
Identities = 14/50 (28%), Positives = 28/50 (56%)
Query: 1226 SQKEVEDILRWGTEELFNDSPGINGKDMGENNTSIEEAVRDLEQKHRKRG 1275
+++E+ IL++G EELF + P G++ I+E ++ E + + G
Sbjct: 953 NKEELSAILKFGAEELFKE-P--EGEEQEPQEMDIDEILKRAETRENEPG 999
Score = 56 (24.8 bits), Expect = 9.4e-95, Sum P(4) = 9.4e-95
Identities = 43/171 (25%), Positives = 68/171 (39%)
Query: 148 SQSGVKSS--GADKVSQIFGNSILAR-KRSNKGKSVLALGVKSLEKSLDSSQVDVSCSTK 204
SQSG S G++ SQ S +R K+ + K A G + + S V S K
Sbjct: 45 SQSGSSDSESGSESGSQSESESDTSREKKQVQAKPPKADGSEFWKSSPSILAVQRSAVLK 104
Query: 205 PENTSAGVPVEGSSSCPNDDDEKQLNASPTDSLADTKF--HPAEE-VLPHSQVTKSEQND 261
+ SS +++D S DS ++TK H E+ + S +D
Sbjct: 105 KQQQQQKA---ASSDSGSEEDSSSSEDSADDSSSETKKKKHKDEDWQMSGSGSVSGTGSD 161
Query: 262 EVPVEKHEKSSTNGS-SGIKFVLAIGASERDRKRKPEV-KDEDSQKKLRVD 310
E +KSS S S + + + + + KP+ K QKK ++D
Sbjct: 162 SESEEDGDKSSCEESESDYEPKNKVKSRKPPSRIKPKSGKKSTGQKKRQLD 212
Score = 52 (23.4 bits), Expect = 6.0e-95, Sum P(6) = 6.0e-95
Identities = 26/104 (25%), Positives = 43/104 (41%)
Query: 1265 RDLEQKHRKRGGGLGDVYQDKCTEGSTKIVWDENAIARLLDRSNLQSGSTDLAEGDLEN- 1323
+DL +K +R G G+ + K K+ + D S S +D + + +N
Sbjct: 1307 KDLARKEAQRLAGAGNSKRRKTRNKKNKMKASKIKEEIKSDSSPQPSEKSDEDDDEEDNK 1366
Query: 1324 DMLGSVKATEWNEETTEDQAESPVA--AVDDASAENSERKE-EN 1364
D + SVK +T ++ E P + + E E KE EN
Sbjct: 1367 DEIVSVKHLHKKIKTEKENEEKPEPDIGIKKEAEEKRETKEKEN 1410
Score = 50 (22.7 bits), Expect = 6.0e-95, Sum P(6) = 6.0e-95
Identities = 14/58 (24%), Positives = 30/58 (51%)
Query: 5 SSSTSTMINRNWVLKRKRRKLPCGPGLSNGKEENLVTSESPRNTPSAKRRLKNEINAD 62
SS + + R+ VLK+++++ +G EE+ +SE + S++ + K + D
Sbjct: 90 SSPSILAVQRSAVLKKQQQQQKAASS-DSGSEEDSSSSEDSADDSSSETKKKKHKDED 146
Score = 46 (21.3 bits), Expect = 4.3e-94, Sum P(5) = 4.3e-94
Identities = 31/123 (25%), Positives = 49/123 (39%)
Query: 526 AVNGKVQDESAVSTEDLGERNDKMVVEDADVSLRDNEGLTVSEIHITCESTDKDVDVGKK 585
AV K Q + ++ D G D ED S D+ T + H KD D
Sbjct: 101 AVLKKQQQQQKAASSDSGSEEDSSSSED---SADDSSSETKKKKH-------KDEDWQMS 150
Query: 586 TSGSVAKRVQEPAVTESAQVKGKAVSYEFLVKWVGKSNIHNSWIPESQLKVLAKRKLENY 645
SGSV+ + +ES + K+ E + K+ + S P S++K + +K
Sbjct: 151 GSGSVSGTGSD---SESEEDGDKSSCEESESDYEPKNKV-KSRKPPSRIKPKSGKKSTGQ 206
Query: 646 KAK 648
K +
Sbjct: 207 KKR 209
Score = 40 (19.1 bits), Expect = 6.0e-95, Sum P(6) = 6.0e-95
Identities = 11/60 (18%), Positives = 24/60 (40%)
Query: 214 VEGSSSCPNDDDEKQLNASPTDSLADTKFHPAEEVLPHSQVTKSEQNDEVPVEKHEKSST 273
++ S +DD++ S + + + AEE S ++VP + ++ T
Sbjct: 211 LDSSEEEEDDDEDYDKRGSRRQATVNVSYKEAEETKTDSDDLLEVCGEDVPQTEEDEFET 270
Score = 40 (19.1 bits), Expect = 4.3e-94, Sum P(5) = 4.3e-94
Identities = 13/43 (30%), Positives = 21/43 (48%)
Query: 200 SCSTKPENTSAGVPVEGSSSCPNDDDEKQ--LNASPTDSLADT 240
S S +S+G +GSSS D + + S ++S +DT
Sbjct: 26 SASGSGSGSSSGSSSDGSSSQSGSSDSESGSESGSQSESESDT 68
Score = 39 (18.8 bits), Expect = 1.3e-93, Sum P(6) = 1.3e-93
Identities = 7/28 (25%), Positives = 17/28 (60%)
Query: 1336 EETTEDQAESPVAAVDDASAENSERKEE 1363
+E+T+ + E V++ +EN E+ ++
Sbjct: 1441 KESTQKEKEVKEEKVNEIKSENKEKSKK 1468
Score = 38 (18.4 bits), Expect = 6.0e-95, Sum P(6) = 6.0e-95
Identities = 12/41 (29%), Positives = 19/41 (46%)
Query: 119 CTQKNDQLKPISNLDSISKRARSKIITIKSQSGVKSSGADK 159
C + +P + + S +R IK +SG KS+G K
Sbjct: 173 CEESESDYEPKNKVKSRKPPSR-----IKPKSGKKSTGQKK 208
>UNIPROTKB|I3LTT5 [details] [associations]
symbol:SMARCA1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF13892
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003677
GO:GO:0004386 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00680000100002 EMBL:CU695129
Ensembl:ENSSSCT00000027860 Uniprot:I3LTT5
Length = 778
Score = 910 (325.4 bits), Expect = 4.0e-94, Sum P(2) = 4.0e-94
Identities = 216/532 (40%), Positives = 301/532 (56%)
Query: 696 KLDEPALEKYSHLTDLFVQFERQTLKKDASEDELPRGKGDCQQSEIVALTEQPEELKGGA 755
KL P ++K L + + + + EDE + + V P +KGG
Sbjct: 127 KLGRPRIKK-DDKQSLISAGDYRHRRTEQEEDEELLSESRKTSNVCVRFEVSPSYVKGGP 185
Query: 756 LFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLS 815
L +Q+ LNWL + N ILADEMGLGKT+ A + L P +VLVP S
Sbjct: 186 LRDYQIRGLNWLISLYENGVNGILADEMGLGKTLQTIALLGYLKHYRNIPGPHMVLVPKS 245
Query: 816 TMPNWLAEFALWAPNLNVVEYHGCAKARAIIRQYEWHASDPDNLNKKTSSYKFNVLLTTY 875
T+ NW+ EF W P+L V+ + G ARA + E + D V +T+Y
Sbjct: 246 TLHNWMNEFKRWVPSLRVICFVGDKDARAAFIRDEMMPGEWD------------VCVTSY 293
Query: 876 EMILADSSHLRGVPWEVLVVDEGHRXXXXXXXXXXXXXXXXXQHRVLLTGTPLQNNIGEM 935
EM++ + S + W LV+DE HR +R+LLTGTPLQNN+ E+
Sbjct: 294 EMVIKEKSVFKKFHWRYLVIDEAHRIKNEKSKLSEIVREFKSTNRLLLTGTPLQNNLHEL 353
Query: 936 YNLLNFLQPASFPSLSSFEEKF---NDLTTTQKVEELKKLVAPHMLRRLKKDAMQNIPPK 992
+ LLNFL P F S F+ F N L + VE L ++ P +LRR+K D +++PPK
Sbjct: 354 WALLNFLLPDVFNSADDFDSWFDTKNCLGDQKLVERLHAVLKPFLLRRIKTDVEKSLPPK 413
Query: 993 TERMVPVELSSIQAEYYRAMLTKNYQILRNIGKGVAQQSMLNIVMQLRKVCNHPYLIPGT 1052
E + + LS +Q E+Y +L K+ +L + GK + + +LNI+MQLRK CNHPYL G
Sbjct: 414 KEIKIYLGLSKMQREWYTKILMKDIDVLNSAGK-MDKMRLLNILMQLRKCCNHPYLFDGA 472
Query: 1053 EPDSGSVEFLHEMRIKASAKLTLLHSMLKVLYKEGHRVLIFSQMTKLLDILEDYLNIEFG 1112
EP G E + S K+ +L +L L ++G RVLIFSQMT+LLDILEDY G
Sbjct: 473 EP--GPPYTTDEHIVSNSGKMVVLDKLLAKLKEQGSRVLIFSQMTRLLDILEDYCMWR-G 529
Query: 1113 PKTYERVDGSVSVGDRQAAITRFN-QDKSRFVFLLSTRSCGLGINLATADTVIIYDSDFN 1171
+ Y R+DG +R+ AI FN + SRF+F+LSTR+ GLGINLA+AD VI+YDSD+N
Sbjct: 530 YE-YCRLDGQTPHEEREEAIEAFNVPNSSRFIFMLSTRAGGLGINLASADVVILYDSDWN 588
Query: 1172 PHADIQAMNRAHRIGQSKRLLVYRLVVRASVEERILQLAKKKLMLDQLFVNK 1223
P D+QAM+RAHRIGQ K + V+RL+ +VEERI++ A+ KL LD + + +
Sbjct: 589 PQVDLQAMDRAHRIGQKKPVRVFRLITDNTVEERIVERAEIKLRLDSIVIQQ 640
Score = 57 (25.1 bits), Expect = 4.0e-94, Sum P(2) = 4.0e-94
Identities = 25/115 (21%), Positives = 46/115 (40%)
Query: 263 VPVEKHEKSSTNGSSGIKFVLAIGASERDRKRKPEVKDE-DSQKKLRVDXXXXXXXXXXX 321
V EK EK +S + LA AS+ +++ PE +++ + + R +
Sbjct: 51 VATEKGEKKKEKNASPFQLKLAAKASKSEKEMDPEYEEKMKADRAKRFEFLLKQTELFAH 110
Query: 322 XXXXIGTLSPGTSKLHEK---QRTNNDEVSASLCEVDVGTKGLDAQRKDELAEET 373
SP TS L+ K R D+ + + D + + + +EL E+
Sbjct: 111 FIQPSAQKSP-TSPLNIKLGRPRIKKDDKQSLISAGDYRHRRTEQEEDEELLSES 164
>UNIPROTKB|K7GNV1 [details] [associations]
symbol:SMARCA1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=IEA] [GO:0031491
"nucleosome binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR000330
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR009057
InterPro:IPR015194 InterPro:IPR015195 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 Pfam:PF13892
PROSITE:PS51194 SMART:SM00490 SMART:SM00717 Gene3D:1.10.10.60
SUPFAM:SSF46689 InterPro:IPR017884 PROSITE:PS51293
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00680000100002 SUPFAM:SSF101224 EMBL:CU695129
GeneID:100188905 RefSeq:XP_003360492.1 Ensembl:ENSSSCT00000032734
Uniprot:K7GNV1
Length = 1061
Score = 910 (325.4 bits), Expect = 4.0e-94, Sum P(2) = 4.0e-94
Identities = 216/532 (40%), Positives = 301/532 (56%)
Query: 696 KLDEPALEKYSHLTDLFVQFERQTLKKDASEDELPRGKGDCQQSEIVALTEQPEELKGGA 755
KL P ++K L + + + + EDE + + V P +KGG
Sbjct: 127 KLGRPRIKK-DDKQSLISAGDYRHRRTEQEEDEELLSESRKTSNVCVRFEVSPSYVKGGP 185
Query: 756 LFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLS 815
L +Q+ LNWL + N ILADEMGLGKT+ A + L P +VLVP S
Sbjct: 186 LRDYQIRGLNWLISLYENGVNGILADEMGLGKTLQTIALLGYLKHYRNIPGPHMVLVPKS 245
Query: 816 TMPNWLAEFALWAPNLNVVEYHGCAKARAIIRQYEWHASDPDNLNKKTSSYKFNVLLTTY 875
T+ NW+ EF W P+L V+ + G ARA + E + D V +T+Y
Sbjct: 246 TLHNWMNEFKRWVPSLRVICFVGDKDARAAFIRDEMMPGEWD------------VCVTSY 293
Query: 876 EMILADSSHLRGVPWEVLVVDEGHRXXXXXXXXXXXXXXXXXQHRVLLTGTPLQNNIGEM 935
EM++ + S + W LV+DE HR +R+LLTGTPLQNN+ E+
Sbjct: 294 EMVIKEKSVFKKFHWRYLVIDEAHRIKNEKSKLSEIVREFKSTNRLLLTGTPLQNNLHEL 353
Query: 936 YNLLNFLQPASFPSLSSFEEKF---NDLTTTQKVEELKKLVAPHMLRRLKKDAMQNIPPK 992
+ LLNFL P F S F+ F N L + VE L ++ P +LRR+K D +++PPK
Sbjct: 354 WALLNFLLPDVFNSADDFDSWFDTKNCLGDQKLVERLHAVLKPFLLRRIKTDVEKSLPPK 413
Query: 993 TERMVPVELSSIQAEYYRAMLTKNYQILRNIGKGVAQQSMLNIVMQLRKVCNHPYLIPGT 1052
E + + LS +Q E+Y +L K+ +L + GK + + +LNI+MQLRK CNHPYL G
Sbjct: 414 KEIKIYLGLSKMQREWYTKILMKDIDVLNSAGK-MDKMRLLNILMQLRKCCNHPYLFDGA 472
Query: 1053 EPDSGSVEFLHEMRIKASAKLTLLHSMLKVLYKEGHRVLIFSQMTKLLDILEDYLNIEFG 1112
EP G E + S K+ +L +L L ++G RVLIFSQMT+LLDILEDY G
Sbjct: 473 EP--GPPYTTDEHIVSNSGKMVVLDKLLAKLKEQGSRVLIFSQMTRLLDILEDYCMWR-G 529
Query: 1113 PKTYERVDGSVSVGDRQAAITRFN-QDKSRFVFLLSTRSCGLGINLATADTVIIYDSDFN 1171
+ Y R+DG +R+ AI FN + SRF+F+LSTR+ GLGINLA+AD VI+YDSD+N
Sbjct: 530 YE-YCRLDGQTPHEEREEAIEAFNVPNSSRFIFMLSTRAGGLGINLASADVVILYDSDWN 588
Query: 1172 PHADIQAMNRAHRIGQSKRLLVYRLVVRASVEERILQLAKKKLMLDQLFVNK 1223
P D+QAM+RAHRIGQ K + V+RL+ +VEERI++ A+ KL LD + + +
Sbjct: 589 PQVDLQAMDRAHRIGQKKPVRVFRLITDNTVEERIVERAEIKLRLDSIVIQQ 640
Score = 57 (25.1 bits), Expect = 4.0e-94, Sum P(2) = 4.0e-94
Identities = 25/115 (21%), Positives = 46/115 (40%)
Query: 263 VPVEKHEKSSTNGSSGIKFVLAIGASERDRKRKPEVKDE-DSQKKLRVDXXXXXXXXXXX 321
V EK EK +S + LA AS+ +++ PE +++ + + R +
Sbjct: 51 VATEKGEKKKEKNASPFQLKLAAKASKSEKEMDPEYEEKMKADRAKRFEFLLKQTELFAH 110
Query: 322 XXXXIGTLSPGTSKLHEK---QRTNNDEVSASLCEVDVGTKGLDAQRKDELAEET 373
SP TS L+ K R D+ + + D + + + +EL E+
Sbjct: 111 FIQPSAQKSP-TSPLNIKLGRPRIKKDDKQSLISAGDYRHRRTEQEEDEELLSES 164
>MGI|MGI:1935129 [details] [associations]
symbol:Smarca5 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily a, member 5"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000183 "chromatin silencing at rDNA"
evidence=IDA] [GO:0000793 "condensed chromosome" evidence=ISO]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=ISO] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005524 "ATP
binding" evidence=ISO] [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0005677 "chromatin silencing complex" evidence=IDA] [GO:0006200
"ATP catabolic process" evidence=ISO] [GO:0006302 "double-strand
break repair" evidence=IMP] [GO:0006333 "chromatin assembly or
disassembly" evidence=IDA] [GO:0006334 "nucleosome assembly"
evidence=ISO] [GO:0006338 "chromatin remodeling"
evidence=ISO;IGI;IDA] [GO:0006352 "DNA-dependent transcription,
initiation" evidence=ISO] [GO:0009790 "embryo development"
evidence=IMP] [GO:0016568 "chromatin modification" evidence=IEA]
[GO:0016584 "nucleosome positioning" evidence=ISO] [GO:0016589
"NURF complex" evidence=ISO] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0016817 "hydrolase activity, acting on acid
anhydrides" evidence=IEA] [GO:0016818 "hydrolase activity, acting
on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0016887 "ATPase activity" evidence=ISO]
[GO:0031213 "RSF complex" evidence=ISO] [GO:0031491 "nucleosome
binding" evidence=IEA] [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=ISO] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=IMP;TAS] InterPro:IPR000330
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR009057
InterPro:IPR015194 InterPro:IPR015195 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 Pfam:PF13892
PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490 SMART:SM00717
MGI:MGI:1935129 GO:GO:0005524 GO:GO:0045893 GO:GO:0005730
GO:GO:0003677 GO:GO:0006352 GO:GO:0016887 Gene3D:1.10.10.60
SUPFAM:SSF46689 GO:GO:0006338 GO:GO:0009790 GO:GO:0043596
GO:GO:0006333 InterPro:IPR017884 PROSITE:PS51293 GO:GO:0000183
GO:GO:0006302 GO:GO:0004386 GO:GO:0000793 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0031491
GO:GO:0043044 GO:GO:0016584 GO:GO:0006334 GO:GO:0005677
GO:GO:0016589 GeneTree:ENSGT00680000100002 HOGENOM:HOG000192862
KO:K11654 SUPFAM:SSF101224 OMA:EDYCHWR GO:GO:0031213
HOVERGEN:HBG056329 OrthoDB:EOG44J2H9 CTD:8467 EMBL:AF375046
EMBL:AF325921 EMBL:BC021922 EMBL:BC053069 EMBL:AK039811
EMBL:AK052320 IPI:IPI00396739 RefSeq:NP_444354.2 UniGene:Mm.246803
ProteinModelPortal:Q91ZW3 SMR:Q91ZW3 DIP:DIP-36073N IntAct:Q91ZW3
MINT:MINT-1867515 STRING:Q91ZW3 PhosphoSite:Q91ZW3 PaxDb:Q91ZW3
PRIDE:Q91ZW3 Ensembl:ENSMUST00000043359 GeneID:93762 KEGG:mmu:93762
UCSC:uc009mja.1 InParanoid:Q91ZW3 NextBio:351651 Bgee:Q91ZW3
Genevestigator:Q91ZW3 GermOnline:ENSMUSG00000031715 Uniprot:Q91ZW3
Length = 1051
Score = 882 (315.5 bits), Expect = 6.8e-94, Sum P(3) = 6.8e-94
Identities = 202/482 (41%), Positives = 285/482 (59%)
Query: 746 EQPEELKGGALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKAK 805
+ P +K G L +Q+ LNWL + N ILADEMGLGKT+ + + +
Sbjct: 169 DSPSYVKWGKLRDYQVRGLNWLISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIP 228
Query: 806 LPCLVLVPLSTMPNWLAEFALWAPNLNVVEYHGCAKARAIIRQYEWHASDPDNLNKKTSS 865
P +VLVP ST+ NW++EF W P L V G + RA + D L
Sbjct: 229 GPHMVLVPKSTLHNWMSEFKKWVPTLRSVCLIGDKEQRAAFVR--------DVLLPG--- 277
Query: 866 YKFNVLLTTYEMILADSSHLRGVPWEVLVVDEGHRXXXXXXXXXXXXXXXXXQHRVLLTG 925
+++V +T+YEM++ + S + W LV+DE HR +R+LLTG
Sbjct: 278 -EWDVCVTSYEMLIKEKSVFKKFNWRYLVIDEAHRIKNEKSKLSEIVREFKTTNRLLLTG 336
Query: 926 TPLQNNIGEMYNLLNFLQPASFPSLSSFEEKF--NDLTTTQK-VEELKKLVAPHMLRRLK 982
TPLQNN+ E+++LLNFL P F S F+ F N+ QK VE L ++ P +LRR+K
Sbjct: 337 TPLQNNLHELWSLLNFLLPDVFNSADDFDSWFDTNNCLGDQKLVERLHMVLRPFLLRRIK 396
Query: 983 KDAMQNIPPKTERMVPVELSSIQAEYYRAMLTKNYQILRNIGKGVAQQSMLNIVMQLRKV 1042
D +++PPK E + V LS +Q E+Y +L K+ IL + GK + + +LNI+MQLRK
Sbjct: 397 ADVEKSLPPKKEVKIYVGLSKMQREWYTRILMKDIDILNSAGK-MDKMRLLNILMQLRKC 455
Query: 1043 CNHPYLIPGTEPDSGSVEFLHEMRIKASAKLTLLHSMLKVLYKEGHRVLIFSQMTKLLDI 1102
CNHPYL G EP +H + S K+ +L +L L ++G RVLIFSQMT++LDI
Sbjct: 456 CNHPYLFDGAEPGPPYTTDMH--LVTNSGKMVVLDKLLPKLKEQGSRVLIFSQMTRVLDI 513
Query: 1103 LEDYLNIEFGPKTYERVDGSVSVGDRQAAITRFNQDKS-RFVFLLSTRSCGLGINLATAD 1161
LEDY + Y R+DG +RQ +I +N+ S +FVF+LSTR+ GLGINLATAD
Sbjct: 514 LEDYCM--WRNYEYCRLDGQTPHDERQDSINAYNEPNSTKFVFMLSTRAGGLGINLATAD 571
Query: 1162 TVIIYDSDFNPHADIQAMNRAHRIGQSKRLLVYRLVVRASVEERILQLAKKKLMLDQLFV 1221
VI+YDSD+NP D+QAM+RAHRIGQ+K + V+R + +VEERI++ A+ KL LD + +
Sbjct: 572 VVILYDSDWNPQVDLQAMDRAHRIGQTKTVRVFRFITDNTVEERIVERAEMKLRLDSIVI 631
Query: 1222 NK 1223
+
Sbjct: 632 QQ 633
Score = 58 (25.5 bits), Expect = 6.8e-94, Sum P(3) = 6.8e-94
Identities = 20/84 (23%), Positives = 32/84 (38%)
Query: 200 SCSTKPENTSAGVPVEGSSSCPNDDDEKQLNASPTDSLADTKFHPAEEVLPHSQVTKSEQ 259
S +KP AG G+ P + ADT+ EEV H K ++
Sbjct: 15 SAPSKPSAAGAGGSSSGNKGGPEGGAAPAAPCAAGSGPADTEM---EEVFDHGSPGKQKE 71
Query: 260 NDEVPVEKHEKSSTNGSSGIKFVL 283
E EK T+ ++ +++L
Sbjct: 72 IQEPDPTYEEKMQTDRANRFEYLL 95
Score = 47 (21.6 bits), Expect = 6.8e-94, Sum P(3) = 6.8e-94
Identities = 12/46 (26%), Positives = 25/46 (54%)
Query: 1208 QLAKKKLMLDQLFVN--KSGSQKEVEDILRWGTEELFNDSPGINGK 1251
+L +K+ +L Q F N K + ++ +WG +++ N + + GK
Sbjct: 829 ELEEKEKLLTQGFTNWNKRDFNQFIKANEKWGRDDIENIAREVEGK 874
>DICTYBASE|DDB_G0292948 [details] [associations]
symbol:isw "CHR group protein" species:44689
"Dictyostelium discoideum" [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=IEA] [GO:0031491 "nucleosome binding"
evidence=IEA] [GO:0016818 "hydrolase activity, acting on acid
anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0006338 "chromatin remodeling" evidence=IEA;ISS] [GO:0005634
"nucleus" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=ISS] [GO:0016587 "Isw1
complex" evidence=ISS] [GO:0006200 "ATP catabolic process"
evidence=ISS] [GO:0044351 "macropinocytosis" evidence=RCA]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 dictyBase:DDB_G0292948 GO:GO:0005524
GenomeReviews:CM000155_GR GO:GO:0003677 EMBL:AAFI02000197
GO:GO:0016887 Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0006338
InterPro:IPR017884 PROSITE:PS51293 GO:GO:0004386 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0031491
GO:GO:0043044 GO:GO:0016587 KO:K11654 SUPFAM:SSF101224
RefSeq:XP_629432.1 ProteinModelPortal:Q54CI4 STRING:Q54CI4
PRIDE:Q54CI4 EnsemblProtists:DDB0231763 GeneID:8628951
KEGG:ddi:DDB_G0292948 InParanoid:Q54CI4 OMA:IREANAF
ProtClustDB:CLSZ2728711 Uniprot:Q54CI4
Length = 1221
Score = 900 (321.9 bits), Expect = 1.4e-93, Sum P(3) = 1.4e-93
Identities = 213/542 (39%), Positives = 314/542 (57%)
Query: 745 TEQPEELKGGALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKA 804
T P +K G + +Q+ LNWL + + + N ILADEMGLGKT+ + + L E+K
Sbjct: 265 TSSPPYIKSGTMRDYQVYGLNWLIQLYERGINGILADEMGLGKTLQTISLLGYL-SEYKG 323
Query: 805 -KLPCLVLVPLSTMPNWLAEFALWAPNLNVVEYHGCAKARAIIRQYEWHASDPDNLNKKT 863
+ P L++ P ST+ W EF W P L VV +HG + R I++ + L K
Sbjct: 324 IRGPHLIIAPKSTLSGWAKEFTRWCPFLRVVRFHGSKEEREDIKK--------NQLIFK- 374
Query: 864 SSYKFNVLLTTYEMILADSSHLRGVPWEVLVVDEGHRXXXXXXXXXXXXXXXXXQHRVLL 923
KF+V +TTYE+ + + S + W +++DE HR Q R+L+
Sbjct: 375 ---KFDVCITTYEVAIREKSTFKKFSWRYIIIDEAHRIKNENSVLSKGVRMFNSQFRLLI 431
Query: 924 TGTPLQNNIGEMYNLLNFLQPASFPSLSSFEEKF---NDLTTTQKV-EELKKLVAPHMLR 979
TGTPLQNN+ E+++LLNFL P F S F++ F N+ Q+V ++L K++ P +LR
Sbjct: 432 TGTPLQNNLHELWSLLNFLLPDVFSSSDDFDKWFDLANNTENQQEVIDKLHKVLRPFLLR 491
Query: 980 RLKKDAMQNIPPKTERMVPVELSSIQAEYYRAMLTKNYQILRNIGKG-VAQQSMLNIVMQ 1038
R+K + +++PPK E + V LS++Q E+Y+ +L+K+ + KG + +LNI MQ
Sbjct: 492 RIKTEVEKSLPPKKEIKLFVGLSTMQKEWYKRLLSKDLDAVVVGAKGNTGRVRLLNICMQ 551
Query: 1039 LRKVCNHPYLIPGTEPDSGSVEFLHEMRIKASAKLTLLHSMLKVLYKEGHRVLIFSQMTK 1098
LRK CNHPYL G E + + E I S K+ LL +LK L + G RVLIFSQM++
Sbjct: 552 LRKACNHPYLFDGAEEEPYTTG---EHLIDNSGKMALLDKLLKKLKERGSRVLIFSQMSR 608
Query: 1099 LLDILEDYLNIEFGPKTYERVDGSVSVGDRQAAITRFNQDKSR-FVFLLSTRSCGLGINL 1157
+LDILEDY+ + G K Y R+DGS R+ +I +N+ S F FLL+TR+ GLGI L
Sbjct: 609 MLDILEDYM-LYRGYK-YARIDGSTESIVRENSIENYNKPGSDLFAFLLTTRAGGLGITL 666
Query: 1158 ATADTVIIYDSDFNPHADIQAMNRAHRIGQSKRLLVYRLVVRASVEERILQLAKKKLMLD 1217
TAD VI++DSD+NP D+QA +RAHRIGQ+K + VYR V S+EE++++ A+ KL LD
Sbjct: 667 NTADIVILFDSDWNPQMDLQAQDRAHRIGQTKPVTVYRFVTENSMEEKMVEKAEMKLQLD 726
Query: 1218 QLFV--------NKSGSQKEVEDILRWGTEELFND-SPGINGKDMGENNTSIEEAVRDLE 1268
L + NK+ +E+ +LR+G +++F S I +D+ EE L
Sbjct: 727 ALVIQQGRLVEANKNAKPEELLAMLRFGADDIFKSKSSTITDEDIDSILKKGEEKTEQLN 786
Query: 1269 QK 1270
K
Sbjct: 787 SK 788
Score = 50 (22.7 bits), Expect = 3.1e-92, Sum P(2) = 3.1e-92
Identities = 14/61 (22%), Positives = 27/61 (44%)
Query: 202 STKPENTSAGVPVEGSSSCPNDDDEKQLNASPTDSLADTKFHPAEEVLPHSQVTKSEQND 261
+TK T + V S+S N+++ N S S + H EE + + ++ + +
Sbjct: 197 NTKKTKTKSPVLSSSSASSSNNNNNNNNNGSIVSSTPTKRGHITEEAEDEAIMNETMEEE 256
Query: 262 E 262
E
Sbjct: 257 E 257
Score = 44 (20.5 bits), Expect = 1.4e-93, Sum P(3) = 1.4e-93
Identities = 15/72 (20%), Positives = 31/72 (43%)
Query: 191 SLDSSQVDVSCSTKPENTSAGVPVEGSSSCPNDDDEKQLNASPTDSLADTKFHPAEEVLP 250
S SS V + P +S+G + S ND++ ++ + + D + + +E P
Sbjct: 36 SSSSSSVGNKRNESPTISSSGN--QSPKSMENDNENEEDEVMEEEEVDDNEENGNDEDAP 93
Query: 251 HSQVTKSEQNDE 262
H + +D+
Sbjct: 94 HPFFDDDQVDDD 105
Score = 38 (18.4 bits), Expect = 1.4e-93, Sum P(3) = 1.4e-93
Identities = 16/68 (23%), Positives = 30/68 (44%)
Query: 461 TENLAELSPNVIRSSDEECMKNDIGVDRIQVYRRSVTKECKVTKECKGENAIDLLREDDK 520
T+ SP + SS N+ + + + TK +T+E + E AI + E +
Sbjct: 198 TKKTKTKSPVLSSSSASSSNNNNNNNNNGSIVSSTPTKRGHITEEAEDE-AI--MNETME 254
Query: 521 DSDPVAVN 528
+ +P + N
Sbjct: 255 EEEPHSFN 262
>RGD|1308832 [details] [associations]
symbol:Smarca5 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily a, member 5"
species:10116 "Rattus norvegicus" [GO:0000183 "chromatin silencing
at rDNA" evidence=ISO] [GO:0000793 "condensed chromosome"
evidence=ISO] [GO:0003677 "DNA binding" evidence=IEA;ISO]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA;ISO] [GO:0005634 "nucleus" evidence=IEA;ISO]
[GO:0005677 "chromatin silencing complex" evidence=ISO] [GO:0005730
"nucleolus" evidence=ISO] [GO:0006200 "ATP catabolic process"
evidence=ISO] [GO:0006302 "double-strand break repair"
evidence=ISO] [GO:0006333 "chromatin assembly or disassembly"
evidence=ISO] [GO:0006334 "nucleosome assembly" evidence=ISO]
[GO:0006338 "chromatin remodeling" evidence=ISO] [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISO] [GO:0009790
"embryo development" evidence=ISO] [GO:0016584 "nucleosome
positioning" evidence=ISO] [GO:0016589 "NURF complex" evidence=ISO]
[GO:0016887 "ATPase activity" evidence=ISO] [GO:0031213 "RSF
complex" evidence=ISO] [GO:0031491 "nucleosome binding"
evidence=IEA] [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=IEA;ISO] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=ISO] [GO:0043596 "nuclear
replication fork" evidence=ISO] [GO:0042393 "histone binding"
evidence=ISO] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 RGD:1308832 GO:GO:0005524 GO:GO:0003677
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0016585 GO:GO:0031491 GO:GO:0043044
GeneTree:ENSGT00680000100002 SUPFAM:SSF101224 OMA:EDYCHWR
IPI:IPI00359419 PRIDE:F1LNL2 Ensembl:ENSRNOT00000024568
UCSC:RGD:1308832 ArrayExpress:F1LNL2 Uniprot:F1LNL2
Length = 1051
Score = 882 (315.5 bits), Expect = 7.7e-93, Sum P(3) = 7.7e-93
Identities = 202/482 (41%), Positives = 285/482 (59%)
Query: 746 EQPEELKGGALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKAK 805
+ P +K G L +Q+ LNWL + N ILADEMGLGKT+ + + +
Sbjct: 169 DSPSYVKWGKLRDYQVRGLNWLISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIP 228
Query: 806 LPCLVLVPLSTMPNWLAEFALWAPNLNVVEYHGCAKARAIIRQYEWHASDPDNLNKKTSS 865
P +VLVP ST+ NW++EF W P L V G + RA + D L
Sbjct: 229 GPHMVLVPKSTLHNWMSEFKRWVPTLRSVCLIGDKEQRAAFVR--------DVLLPG--- 277
Query: 866 YKFNVLLTTYEMILADSSHLRGVPWEVLVVDEGHRXXXXXXXXXXXXXXXXXQHRVLLTG 925
+++V +T+YEM++ + S + W LV+DE HR +R+LLTG
Sbjct: 278 -EWDVCVTSYEMLIKEKSVFKKFNWRYLVIDEAHRIKNEKSKLSEIVREFKTTNRLLLTG 336
Query: 926 TPLQNNIGEMYNLLNFLQPASFPSLSSFEEKF--NDLTTTQK-VEELKKLVAPHMLRRLK 982
TPLQNN+ E+++LLNFL P F S F+ F N+ QK VE L ++ P +LRR+K
Sbjct: 337 TPLQNNLHELWSLLNFLLPDVFNSADDFDSWFDTNNCLGDQKLVERLHMVLRPFLLRRIK 396
Query: 983 KDAMQNIPPKTERMVPVELSSIQAEYYRAMLTKNYQILRNIGKGVAQQSMLNIVMQLRKV 1042
D +++PPK E + V LS +Q E+Y +L K+ IL + GK + + +LNI+MQLRK
Sbjct: 397 ADVEKSLPPKKEVKIYVGLSKMQREWYTRILMKDIDILNSAGK-MDKMRLLNILMQLRKC 455
Query: 1043 CNHPYLIPGTEPDSGSVEFLHEMRIKASAKLTLLHSMLKVLYKEGHRVLIFSQMTKLLDI 1102
CNHPYL G EP +H + S K+ +L +L L ++G RVLIFSQMT++LDI
Sbjct: 456 CNHPYLFDGAEPGPPYTTDMH--LVTNSGKMVVLDKLLPKLKEQGSRVLIFSQMTRVLDI 513
Query: 1103 LEDYLNIEFGPKTYERVDGSVSVGDRQAAITRFNQDKS-RFVFLLSTRSCGLGINLATAD 1161
LEDY + Y R+DG +RQ +I +N+ S +FVF+LSTR+ GLGINLATAD
Sbjct: 514 LEDYCM--WRNYEYCRLDGQTPHDERQDSINAYNEPNSTKFVFMLSTRAGGLGINLATAD 571
Query: 1162 TVIIYDSDFNPHADIQAMNRAHRIGQSKRLLVYRLVVRASVEERILQLAKKKLMLDQLFV 1221
VI+YDSD+NP D+QAM+RAHRIGQ+K + V+R + +VEERI++ A+ KL LD + +
Sbjct: 572 VVILYDSDWNPQVDLQAMDRAHRIGQTKTVRVFRFITDNTVEERIVERAEMKLRLDSIVI 631
Query: 1222 NK 1223
+
Sbjct: 632 QQ 633
Score = 48 (22.0 bits), Expect = 7.7e-93, Sum P(3) = 7.7e-93
Identities = 19/84 (22%), Positives = 32/84 (38%)
Query: 200 SCSTKPENTSAGVPVEGSSSCPNDDDEKQLNASPTDSLADTKFHPAEEVLPHSQVTKSEQ 259
S +KP AG G+ P ++ ADT+ EEV K ++
Sbjct: 15 SAPSKPSAAGAGGSSSGNKGGPEGGAAPAAPSATGAGPADTEM---EEVFDDGSPGKQKE 71
Query: 260 NDEVPVEKHEKSSTNGSSGIKFVL 283
E EK T+ ++ +++L
Sbjct: 72 IQEPDPTYEEKMQTDRANRFEYLL 95
Score = 47 (21.6 bits), Expect = 7.7e-93, Sum P(3) = 7.7e-93
Identities = 12/46 (26%), Positives = 25/46 (54%)
Query: 1208 QLAKKKLMLDQLFVN--KSGSQKEVEDILRWGTEELFNDSPGINGK 1251
+L +K+ +L Q F N K + ++ +WG +++ N + + GK
Sbjct: 829 ELEEKEKLLTQGFTNWNKRDFNQFIKANEKWGRDDIENIAREVEGK 874
>UNIPROTKB|F1N052 [details] [associations]
symbol:SMARCA5 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0043596 "nuclear replication fork" evidence=IEA]
[GO:0043044 "ATP-dependent chromatin remodeling" evidence=IEA]
[GO:0042393 "histone binding" evidence=IEA] [GO:0031213 "RSF
complex" evidence=IEA] [GO:0016887 "ATPase activity" evidence=IEA]
[GO:0016589 "NURF complex" evidence=IEA] [GO:0016584 "nucleosome
positioning" evidence=IEA] [GO:0009790 "embryo development"
evidence=IEA] [GO:0006352 "DNA-dependent transcription, initiation"
evidence=IEA] [GO:0006334 "nucleosome assembly" evidence=IEA]
[GO:0006302 "double-strand break repair" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005677 "chromatin silencing complex"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0000793 "condensed chromosome"
evidence=IEA] [GO:0000183 "chromatin silencing at rDNA"
evidence=IEA] [GO:0031491 "nucleosome binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] InterPro:IPR000330
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR009057
InterPro:IPR015194 InterPro:IPR015195 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 Pfam:PF13892
PROSITE:PS51194 SMART:SM00490 SMART:SM00717 GO:GO:0005524
GO:GO:0005730 GO:GO:0003677 GO:GO:0006352 GO:GO:0016887
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0009790 GO:GO:0043596
InterPro:IPR017884 PROSITE:PS51293 GO:GO:0000183 GO:GO:0006302
GO:GO:0004386 GO:GO:0000793 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0031491 GO:GO:0043044 GO:GO:0016584
GO:GO:0006334 GO:GO:0005677 GO:GO:0016589
GeneTree:ENSGT00680000100002 SUPFAM:SSF101224 OMA:EDYCHWR
GO:GO:0031213 EMBL:DAAA02044371 IPI:IPI00868566 UniGene:Bt.103096
Ensembl:ENSBTAT00000004408 Uniprot:F1N052
Length = 1052
Score = 883 (315.9 bits), Expect = 1.6e-92, Sum P(3) = 1.6e-92
Identities = 202/482 (41%), Positives = 285/482 (59%)
Query: 746 EQPEELKGGALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKAK 805
+ P +K G L +Q+ LNWL + N ILADEMGLGKT+ + + +
Sbjct: 170 DSPSYVKWGKLRDYQVRGLNWLISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIP 229
Query: 806 LPCLVLVPLSTMPNWLAEFALWAPNLNVVEYHGCAKARAIIRQYEWHASDPDNLNKKTSS 865
P +VLVP ST+ NW++EF W P L V G + RA + D L
Sbjct: 230 GPHMVLVPKSTLHNWMSEFKRWVPTLRSVCLIGDKEQRAAFVR--------DVLLPG--- 278
Query: 866 YKFNVLLTTYEMILADSSHLRGVPWEVLVVDEGHRXXXXXXXXXXXXXXXXXQHRVLLTG 925
+++V +T+YEM++ + S + W LV+DE HR +R+LLTG
Sbjct: 279 -EWDVCVTSYEMLIKEKSVFKKFNWRYLVIDEAHRIKNEKSKLSEIVREFKTTNRLLLTG 337
Query: 926 TPLQNNIGEMYNLLNFLQPASFPSLSSFEEKF--NDLTTTQK-VEELKKLVAPHMLRRLK 982
TPLQNN+ E+++LLNFL P F S F+ F N+ QK VE L ++ P +LRR+K
Sbjct: 338 TPLQNNLHELWSLLNFLLPDVFNSADDFDSWFDTNNCLGDQKLVERLHMVLRPFLLRRIK 397
Query: 983 KDAMQNIPPKTERMVPVELSSIQAEYYRAMLTKNYQILRNIGKGVAQQSMLNIVMQLRKV 1042
D +++PPK E + V LS +Q E+Y +L K+ IL + GK + + +LNI+MQLRK
Sbjct: 398 ADVEKSLPPKKEVKIYVGLSKMQREWYTRILMKDIDILNSAGK-MDKMRLLNILMQLRKC 456
Query: 1043 CNHPYLIPGTEPDSGSVEFLHEMRIKASAKLTLLHSMLKVLYKEGHRVLIFSQMTKLLDI 1102
CNHPYL G EP +H + S K+ +L +L L ++G RVLIFSQMT++LDI
Sbjct: 457 CNHPYLFDGAEPGPPYTTDMH--LVTNSGKMVVLDKLLPKLKEQGSRVLIFSQMTRVLDI 514
Query: 1103 LEDYLNIEFGPKTYERVDGSVSVGDRQAAITRFNQDKS-RFVFLLSTRSCGLGINLATAD 1161
LEDY + Y R+DG +RQ +I +N+ S +FVF+LSTR+ GLGINLATAD
Sbjct: 515 LEDYCM--WRNYEYCRLDGQTPHDERQESINAYNEPNSTKFVFMLSTRAGGLGINLATAD 572
Query: 1162 TVIIYDSDFNPHADIQAMNRAHRIGQSKRLLVYRLVVRASVEERILQLAKKKLMLDQLFV 1221
VI+YDSD+NP D+QAM+RAHRIGQ+K + V+R + +VEERI++ A+ KL LD + +
Sbjct: 573 VVILYDSDWNPQVDLQAMDRAHRIGQTKTVRVFRFITDNTVEERIVERAEMKLRLDSIVI 632
Query: 1222 NK 1223
+
Sbjct: 633 QQ 634
Score = 47 (21.6 bits), Expect = 1.6e-92, Sum P(3) = 1.6e-92
Identities = 12/46 (26%), Positives = 25/46 (54%)
Query: 1208 QLAKKKLMLDQLFVN--KSGSQKEVEDILRWGTEELFNDSPGINGK 1251
+L +K+ +L Q F N K + ++ +WG +++ N + + GK
Sbjct: 830 ELEEKEKLLTQGFTNWNKRDFNQFIKANEKWGRDDIENIAREVEGK 875
Score = 44 (20.5 bits), Expect = 1.6e-92, Sum P(3) = 1.6e-92
Identities = 15/54 (27%), Positives = 25/54 (46%)
Query: 230 NASPTDSLADTKFHPAEEVLPHSQVTKSEQNDEVPVEKHEKSSTNGSSGIKFVL 283
NA PTDS EEV ++ K ++ E EK T+ ++ +++L
Sbjct: 50 NAGPTDS-------EMEEVFDNASPGKQKEIQEPDPTYEEKMQTDRANRFEYLL 96
>UNIPROTKB|G4NCV5 [details] [associations]
symbol:MGG_01012 "ISWI chromatin-remodeling complex ATPase
ISW2" species:242507 "Magnaporthe oryzae 70-15" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000330
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR009057
InterPro:IPR015194 InterPro:IPR015195 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 PROSITE:PS51194 SMART:SM00490
SMART:SM00717 GO:GO:0005524 EMBL:CM001235 GO:GO:0003677
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0016585 GO:GO:0031491 GO:GO:0043044
SUPFAM:SSF101224 RefSeq:XP_003717932.1 EnsemblFungi:MGG_01012T0
GeneID:2674262 KEGG:mgr:MGG_01012 Uniprot:G4NCV5
Length = 1128
Score = 912 (326.1 bits), Expect = 1.9e-92, Sum P(2) = 1.9e-92
Identities = 222/594 (37%), Positives = 338/594 (56%)
Query: 721 KKDASED-ELPRGKGDCQQSEIVALTEQPEELKGGALFPHQLEALNWLRKCWHKSKNVIL 779
+ +A ED EL + + +E V E P ++G + +Q+ LNWL + IL
Sbjct: 152 RTEAEEDAELLKDEKHGGSAETV-FRESPAFIQG-TMRDYQIAGLNWLISLHENGISGIL 209
Query: 780 ADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLSTMPNWLAEFALWAPNLNVVEYHGC 839
ADEMGLGKT+ +F+ L P LV+VP ST+ NW EF W P +NV+ G
Sbjct: 210 ADEMGLGKTLQTISFLGYLRHIMGITGPHLVIVPKSTLDNWKREFGKWTPEVNVLVLQGA 269
Query: 840 AKARAIIRQYEWHASDPDNLNKKTSSYKFNVLLTTYEMILADSSHLRGVPWEVLVVDEGH 899
+ RA + + ++ F+V +T+YEMIL + SHL+ WE +++DE H
Sbjct: 270 KEERAAL------------IAERLVDESFDVCITSYEMILREKSHLKKFAWEYIIIDEAH 317
Query: 900 RXXXXXXXXXXXXXXXXXQHRVLLTGTPLQNNIGEMYNLLNFLQPASFPSLSSFEEKFND 959
R ++R+L+TGTPLQNNI E++ LLNFL P F +F++ F+
Sbjct: 318 RIKNEESSLAQVIRLFNSRNRLLITGTPLQNNIHELWALLNFLLPDVFGDSEAFDQWFSG 377
Query: 960 --LTTTQKVEELKKLVAPHMLRRLKKDAMQNIPPKTERMVPVELSSIQAEYYRAMLTKNY 1017
+ V++L +++ P +LRR+K D +++ PK E + ++++ +Q +Y+ +L K+
Sbjct: 378 EGQDSDTVVQQLHRVLRPFLLRRVKADVEKSLLPKKEVNLYLKMTEMQRTWYQKILEKDI 437
Query: 1018 QILRNI-GKGVAQQSMLNIVMQLRKVCNHPYLIPGTEPDSGSVEFLHEMRIKASAKLTLL 1076
+ GK ++ +LNIVMQLRK CNHPYL G EP G E + S K+ +L
Sbjct: 438 DAVNGANGKRESKTRLLNIVMQLRKCCNHPYLFEGAEP--GPPYTTDEHLVYNSGKMVVL 495
Query: 1077 HSMLKVLYKEGHRVLIFSQMTKLLDILEDYLNIEFGPKTYERVDGSVSVGDRQAAITRFN 1136
+LK L +G RVLIFSQM+++LDILEDY F Y R+DG + DR AAI +N
Sbjct: 496 DKLLKRLKAQGSRVLIFSQMSRVLDILEDYC--VFREYKYSRIDGGTAHEDRIAAIDEYN 553
Query: 1137 QDKS-RFVFLLSTRSCGLGINLATADTVIIYDSDFNPHADIQAMNRAHRIGQSKRLLVYR 1195
+ S +FVFLL+TR+ GLGINL TAD VI++DSD+NP AD+QAM+RAHRIGQ+K++ VYR
Sbjct: 554 KPGSEKFVFLLTTRAGGLGINLTTADIVILFDSDWNPQADLQAMDRAHRIGQTKQVYVYR 613
Query: 1196 LVVRASVEERILQLAKKKLMLDQLFVN--------KSGSQK-EVEDILRWGTEELFN-DS 1245
+V ++EE++L+ A +KL LD+L + K+ + K E+ +++ G ++FN DS
Sbjct: 614 FLVDNTIEEKVLERAAQKLHLDRLVIQQGRAQVAAKAAANKDELLSMIQHGAAKVFNKDS 673
Query: 1246 PGINGKDMGE-NNTSIEEAVRDLEQKHRKRGGGLGDVYQDKCTEGSTKIVWDEN 1298
G K + + IE + E + R+ + D + S++ +D N
Sbjct: 674 DGDVVKSADDIQDDDIEAMLASGESRTRELNARYEKLGIDDLQKFSSESAYDWN 727
Score = 39 (18.8 bits), Expect = 1.9e-92, Sum P(2) = 1.9e-92
Identities = 13/58 (22%), Positives = 25/58 (43%)
Query: 247 EVLPHSQVTKSEQNDEVPVEKHEKSSTNGSSGIKFVLAIGASERDRKRKPEVKDEDSQ 304
++ H T + N +EK + + + G K G + R R+ E +ED++
Sbjct: 104 DLFRHFIETNPDPNIRNIMEKIDAQNQEATKGKKGASRQGGASSGRVRRTEA-EEDAE 160
>UNIPROTKB|F1SDB8 [details] [associations]
symbol:CHD1L "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0006974 "response to DNA damage stimulus" evidence=IEA]
[GO:0006338 "chromatin remodeling" evidence=IEA] [GO:0005886
"plasma membrane" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR002464
Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690 PROSITE:PS51194
SMART:SM00490 GO:GO:0005886 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0003677 GO:GO:0006974 GO:GO:0006338
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR002589
PROSITE:PS51154 GO:GO:0008026 OMA:TCQTIAL
GeneTree:ENSGT00670000098110 EMBL:CU462855
Ensembl:ENSSSCT00000007340 Uniprot:F1SDB8
Length = 905
Score = 891 (318.7 bits), Expect = 2.0e-92, Sum P(3) = 2.0e-92
Identities = 208/508 (40%), Positives = 299/508 (58%)
Query: 751 LKGGALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLV 810
L G L P+QLE +NWL +C+H IL DEMGLGKT A L + P L+
Sbjct: 43 LTGIHLRPYQLEGVNWLAQCFHYQNGCILGDEMGLGKTCQTIAVFIYLAGRLNDEGPFLI 102
Query: 811 LVPLSTMPNWLAEFALWAPNLNVVEYHGCAKARAIIRQYEWHASDPDNLNKKTSSYKFNV 870
L PLS + NW E AP L V Y G + RA ++Q +L +++ F+V
Sbjct: 103 LCPLSVLSNWKEEMERCAPGLCCVTYAGDKEERAHLQQ---------DLKQESG---FHV 150
Query: 871 LLTTYEMILADSSHLRGVPWEVLVVDEGHRXXXXXXXXXXXXXXXXXQHRVLLTGTPLQN 930
LLTTYE+ L D+S L+ PW VLVVDE HR R+LLTGTP+QN
Sbjct: 151 LLTTYEICLKDASFLKSFPWSVLVVDEAHRLKNQNSLLHKSLSEFSVAFRLLLTGTPIQN 210
Query: 931 NIGEMYNLLNFLQPASFPS--LSSFEEKFNDLTT-TQKVEELKKLVAPHMLRRLKKDAMQ 987
++ E+Y+LL+F++P F + F +++ D+ ++ EL KL+ P +LRR+K +
Sbjct: 211 SLQELYSLLSFVEPDLFSKEEVEDFVQRYEDIEKESESASELYKLLQPFLLRRVKAEVAA 270
Query: 988 NIPPKTERMVPVELSSIQAEYYRAMLTKNYQILRNIGKGVAQQSML-NIVMQLRKVCNHP 1046
+P KTE ++ +S++Q +YY+A+L K+ +I +A++ L N++ QLRK +HP
Sbjct: 271 ELPKKTEVVIYHGMSALQKKYYKAILMKDLEISDAFENEMAKKVKLQNVLSQLRKCVDHP 330
Query: 1047 YLIPGTEPDSGSVEFLHEMRIKASAKLTLLHSMLKVLYKEGHRVLIFSQMTKLLDILEDY 1106
YL G EP+ + + I+AS KL LL +L LY +GHRVL+FSQMT++LDIL+DY
Sbjct: 331 YLFDGVEPEPFEIG---DHLIEASGKLHLLDKLLAFLYSKGHRVLLFSQMTQMLDILQDY 387
Query: 1107 LNIEFGPKTYERVDGSVSVGDRQAAITRFNQDKSRFVFLLSTRSCGLGINLATADTVIIY 1166
+ ++ +YERVDGSV +R AI F Q F+FLLSTR+ G+G+NL ADTVI
Sbjct: 388 M--DYRGYSYERVDGSVRGEERHLAIKNFGQQPI-FIFLLSTRAGGVGMNLTAADTVIFV 444
Query: 1167 DSDFNPHADIQAMNRAHRIGQSKRLLVYRLVVRASVEERILQLAKKKLMLDQLFVNKS-- 1224
DSDFNP D+QA RAHRIGQ+K + V RL+ R +VEE I + A KL L +
Sbjct: 445 DSDFNPQNDLQAAARAHRIGQNKSVKVIRLIGRDTVEEIICRKAASKLKLTNTIIEGGRF 504
Query: 1225 --GSQK-------EVEDILRWGTEELFN 1243
G+Q+ ++ +IL++G ++L +
Sbjct: 505 TLGAQRPAAEADLQLSEILKFGLDKLLS 532
Score = 43 (20.2 bits), Expect = 2.0e-92, Sum P(3) = 2.0e-92
Identities = 9/41 (21%), Positives = 24/41 (58%)
Query: 265 VEKHEKSSTNGSSGIKFVLAIGASERDRKRKPEVKDEDSQK 305
+E+ E ++ G+ +F+LA+ + R + V+++D ++
Sbjct: 1 MERAEAGTSAGNMP-RFLLALQSQSRTEAERARVQEQDLRR 40
Score = 38 (18.4 bits), Expect = 2.0e-92, Sum P(3) = 2.0e-92
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 1337 ETTEDQAESPVAAVDDASAENSERK 1361
E ED+AE A +D A +++ K
Sbjct: 700 EDLEDEAEESSAPLDYADPDSTSIK 724
>UNIPROTKB|F1RRG9 [details] [associations]
symbol:SMARCA5 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0043596 "nuclear replication fork" evidence=IEA]
[GO:0043044 "ATP-dependent chromatin remodeling" evidence=IEA]
[GO:0042393 "histone binding" evidence=IEA] [GO:0031213 "RSF
complex" evidence=IEA] [GO:0016887 "ATPase activity" evidence=IEA]
[GO:0016589 "NURF complex" evidence=IEA] [GO:0016584 "nucleosome
positioning" evidence=IEA] [GO:0009790 "embryo development"
evidence=IEA] [GO:0006352 "DNA-dependent transcription, initiation"
evidence=IEA] [GO:0006334 "nucleosome assembly" evidence=IEA]
[GO:0006302 "double-strand break repair" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005677 "chromatin silencing complex"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0000793 "condensed chromosome"
evidence=IEA] [GO:0000183 "chromatin silencing at rDNA"
evidence=IEA] [GO:0031491 "nucleosome binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] InterPro:IPR000330
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR009057
InterPro:IPR015194 InterPro:IPR015195 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 Pfam:PF13892
PROSITE:PS51194 SMART:SM00490 SMART:SM00717 GO:GO:0005524
GO:GO:0005730 GO:GO:0003677 GO:GO:0006352 GO:GO:0016887
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0009790 GO:GO:0043596
InterPro:IPR017884 PROSITE:PS51293 GO:GO:0000183 GO:GO:0006302
GO:GO:0004386 GO:GO:0000793 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0031491 GO:GO:0043044 GO:GO:0016584
GO:GO:0006334 GO:GO:0005677 GO:GO:0016589
GeneTree:ENSGT00680000100002 KO:K11654 SUPFAM:SSF101224 OMA:EDYCHWR
GO:GO:0031213 CTD:8467 EMBL:CU463195 RefSeq:XP_003129222.2
UniGene:Ssc.97261 Ensembl:ENSSSCT00000009907 GeneID:100188903
KEGG:ssc:100188903 ArrayExpress:F1RRG9 Uniprot:F1RRG9
Length = 1052
Score = 883 (315.9 bits), Expect = 3.2e-92, Sum P(3) = 3.2e-92
Identities = 202/482 (41%), Positives = 285/482 (59%)
Query: 746 EQPEELKGGALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKAK 805
+ P +K G L +Q+ LNWL + N ILADEMGLGKT+ + + +
Sbjct: 170 DSPSYVKWGKLRDYQVRGLNWLISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIP 229
Query: 806 LPCLVLVPLSTMPNWLAEFALWAPNLNVVEYHGCAKARAIIRQYEWHASDPDNLNKKTSS 865
P +VLVP ST+ NW++EF W P L V G + RA + D L
Sbjct: 230 GPHMVLVPKSTLHNWMSEFKRWVPTLRSVCLIGDKEQRAAFVR--------DVLLPG--- 278
Query: 866 YKFNVLLTTYEMILADSSHLRGVPWEVLVVDEGHRXXXXXXXXXXXXXXXXXQHRVLLTG 925
+++V +T+YEM++ + S + W LV+DE HR +R+LLTG
Sbjct: 279 -EWDVCVTSYEMLIKEKSVFKKFNWRYLVIDEAHRIKNEKSKLSEIVREFKTTNRLLLTG 337
Query: 926 TPLQNNIGEMYNLLNFLQPASFPSLSSFEEKF--NDLTTTQK-VEELKKLVAPHMLRRLK 982
TPLQNN+ E+++LLNFL P F S F+ F N+ QK VE L ++ P +LRR+K
Sbjct: 338 TPLQNNLHELWSLLNFLLPDVFNSADDFDSWFDTNNCLGDQKLVERLHMVLRPFLLRRIK 397
Query: 983 KDAMQNIPPKTERMVPVELSSIQAEYYRAMLTKNYQILRNIGKGVAQQSMLNIVMQLRKV 1042
D +++PPK E + V LS +Q E+Y +L K+ IL + GK + + +LNI+MQLRK
Sbjct: 398 ADVEKSLPPKKEVKIYVGLSKMQREWYTRILMKDIDILNSAGK-MDKMRLLNILMQLRKC 456
Query: 1043 CNHPYLIPGTEPDSGSVEFLHEMRIKASAKLTLLHSMLKVLYKEGHRVLIFSQMTKLLDI 1102
CNHPYL G EP +H + S K+ +L +L L ++G RVLIFSQMT++LDI
Sbjct: 457 CNHPYLFDGAEPGPPYTTDMH--LVTNSGKMVVLDKLLPKLKEQGSRVLIFSQMTRVLDI 514
Query: 1103 LEDYLNIEFGPKTYERVDGSVSVGDRQAAITRFNQDKS-RFVFLLSTRSCGLGINLATAD 1161
LEDY + Y R+DG +RQ +I +N+ S +FVF+LSTR+ GLGINLATAD
Sbjct: 515 LEDYCM--WRNYEYCRLDGQTPHDERQESINAYNEPNSTKFVFMLSTRAGGLGINLATAD 572
Query: 1162 TVIIYDSDFNPHADIQAMNRAHRIGQSKRLLVYRLVVRASVEERILQLAKKKLMLDQLFV 1221
VI+YDSD+NP D+QAM+RAHRIGQ+K + V+R + +VEERI++ A+ KL LD + +
Sbjct: 573 VVILYDSDWNPQVDLQAMDRAHRIGQTKTVRVFRFITDNTVEERIVERAEMKLRLDSIVI 632
Query: 1222 NK 1223
+
Sbjct: 633 QQ 634
Score = 47 (21.6 bits), Expect = 3.2e-92, Sum P(3) = 3.2e-92
Identities = 12/46 (26%), Positives = 25/46 (54%)
Query: 1208 QLAKKKLMLDQLFVN--KSGSQKEVEDILRWGTEELFNDSPGINGK 1251
+L +K+ +L Q F N K + ++ +WG +++ N + + GK
Sbjct: 830 ELEEKEKLLTQGFTNWNKRDFNQFIKANEKWGRDDIENIAREVEGK 875
Score = 41 (19.5 bits), Expect = 3.2e-92, Sum P(3) = 3.2e-92
Identities = 19/85 (22%), Positives = 38/85 (44%)
Query: 200 SCSTKPENTSAGVPVEGSSSCPNDDDEK-QLNASPTDSLADTKFHPAEEVLPHSQVTKSE 258
S +KP +++A GS++ E + A+P+ + A EEV + K +
Sbjct: 15 SAPSKPASSAA---CSGSNNSNKGGPEGFGVPAAPSAAGAGPTDSEMEEVFDDASPGKQK 71
Query: 259 QNDEVPVEKHEKSSTNGSSGIKFVL 283
+ E EK T+ ++ +++L
Sbjct: 72 EIQEPDPTYEEKMQTDRANRFEYLL 96
>UNIPROTKB|F1RTI9 [details] [associations]
symbol:SMARCA1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0036310 "annealing helicase
activity" evidence=IEA] [GO:0030182 "neuron differentiation"
evidence=IEA] [GO:0016589 "NURF complex" evidence=IEA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IEA] [GO:0007420 "brain
development" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=IEA] [GO:0031491 "nucleosome binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 GO:GO:0005524 GO:GO:0045893
GO:GO:0007420 GO:GO:0030182 GO:GO:0003677 GO:GO:0006351
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0031491 GO:GO:0043044 GO:GO:0016589
GO:GO:0008094 GeneTree:ENSGT00680000100002 SUPFAM:SSF101224
OMA:PMSQKRK EMBL:CU695129 Ensembl:ENSSSCT00000013830 Uniprot:F1RTI9
Length = 1073
Score = 888 (317.7 bits), Expect = 1.3e-91, Sum P(2) = 1.3e-91
Identities = 216/542 (39%), Positives = 303/542 (55%)
Query: 696 KLDEPALEKYSHLTDLFVQFERQTLKKDASEDELPRGKGDCQQSEIVALTEQPEELKGGA 755
KL P ++K L + + + + EDE + + V P +KGG
Sbjct: 127 KLGRPRIKK-DDKQSLISAGDYRHRRTEQEEDEELLSESRKTSNVCVRFEVSPSYVKGGP 185
Query: 756 LFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLS 815
L +Q+ LNWL + N ILADEMGLGKT+ A + L P +VLVP S
Sbjct: 186 LRDYQIRGLNWLISLYENGVNGILADEMGLGKTLQTIALLGYLKHYRNIPGPHMVLVPKS 245
Query: 816 TMPNWLAEFALWAPNLNVVEYHGCAKARAIIRQYEWHASDPDNLNKKTSSYKFNVLLTTY 875
T+ NW+ EF W P+L V+ + G ARA + E + D V +T+Y
Sbjct: 246 TLHNWMNEFKRWVPSLRVICFVGDKDARAAFIRDEMMPGEWD------------VCVTSY 293
Query: 876 EMILADSSHLRGVPWEVLVVDEGHRXXXXXXXXXXXXXXXXXQHRVLLTGTPLQNNIGEM 935
EM++ + S + W LV+DE HR +R+LLTGTPLQNN+ E+
Sbjct: 294 EMVIKEKSVFKKFHWRYLVIDEAHRIKNEKSKLSEIVREFKSTNRLLLTGTPLQNNLHEL 353
Query: 936 YNLLNFLQPASFPSLSSFEEKF---NDLTTTQKVEELKKLVAPHMLRRLKKDAMQNIPPK 992
+ LLNFL P F S F+ F N L + VE L ++ P +LRR+K D +++PPK
Sbjct: 354 WALLNFLLPDVFNSADDFDSWFDTKNCLGDQKLVERLHAVLKPFLLRRIKTDVEKSLPPK 413
Query: 993 TERMVPVELSSIQAEYYRAMLTKNYQILRNIGKGVAQQSMLNIVMQLRKVCNHPYLIPGT 1052
E + + LS +Q E+Y +L K+ +L + GK + + +LNI+MQLRK CNHPYL G
Sbjct: 414 KEIKIYLGLSKMQREWYTKILMKDIDVLNSAGK-MDKMRLLNILMQLRKCCNHPYLFDGA 472
Query: 1053 EPDSGSVEFLHEMRIKASAKLTLLHSMLKVLYKEGHRVLIFSQMTKLLDILEDYL---NI 1109
EP G E + S K+ +L +L L ++G RVLIFSQMT+LLDILEDY
Sbjct: 473 EP--GPPYTTDEHIVSNSGKMVVLDKLLAKLKEQGSRVLIFSQMTRLLDILEDYCMWRGY 530
Query: 1110 EF----GPKTYE-RVDGSVSV--GDRQAAITRFN-QDKSRFVFLLSTRSCGLGINLATAD 1161
E+ G +E R +G + + R+ AI FN + SRF+F+LSTR+ GLGINLA+AD
Sbjct: 531 EYCRLDGQTPHEERENGFLQIYFRRRREAIEAFNVPNSSRFIFMLSTRAGGLGINLASAD 590
Query: 1162 TVIIYDSDFNPHADIQAMNRAHRIGQSKRLLVYRLVVRASVEERILQLAKKKLMLDQLFV 1221
VI+YDSD+NP D+QAM+RAHRIGQ K + V+RL+ +VEERI++ A+ KL LD + +
Sbjct: 591 VVILYDSDWNPQVDLQAMDRAHRIGQKKPVRVFRLITDNTVEERIVERAEIKLRLDSIVI 650
Query: 1222 NK 1223
+
Sbjct: 651 QQ 652
Score = 276 (102.2 bits), Expect = 5.0e-20, Sum P(2) = 5.0e-20
Identities = 67/184 (36%), Positives = 108/184 (58%)
Query: 1105 DYLNIEFGPKTYERVDGSVSV--GDRQAAITRFN-QDKSRFVFLLSTRSCGLGINLATAD 1161
+Y ++ ER +G + + R+ AI FN + SRF+F+LSTR+ GLGINLA+AD
Sbjct: 531 EYCRLDGQTPHEERENGFLQIYFRRRREAIEAFNVPNSSRFIFMLSTRAGGLGINLASAD 590
Query: 1162 TVIIYDSDFNPHADIQAMNRAHRIGQSKRLLVYRLVVRASVEERILQLAKKKLMLDQLFV 1221
VI+YDSD+NP D+QAM+RAHRIGQ K + V+RL+ +VEERI++ A+ KL LD + +
Sbjct: 591 VVILYDSDWNPQVDLQAMDRAHRIGQKKPVRVFRLITDNTVEERIVERAEIKLRLDSIVI 650
Query: 1222 NKSG---------SQKEVEDILRWGTEELFNDSPG-INGKDMGENNTSIEEAVRDLEQKH 1271
+ +++E+ ++R G +F + +D+ E ++ ++
Sbjct: 651 QQGRLIDQQSNKMAKEEMLQMIRHGATHVFASKESELTDEDITTLLERGERKTAEMNERL 710
Query: 1272 RKRG 1275
+K G
Sbjct: 711 QKMG 714
Score = 57 (25.1 bits), Expect = 1.3e-91, Sum P(2) = 1.3e-91
Identities = 25/115 (21%), Positives = 46/115 (40%)
Query: 263 VPVEKHEKSSTNGSSGIKFVLAIGASERDRKRKPEVKDE-DSQKKLRVDXXXXXXXXXXX 321
V EK EK +S + LA AS+ +++ PE +++ + + R +
Sbjct: 51 VATEKGEKKKEKNASPFQLKLAAKASKSEKEMDPEYEEKMKADRAKRFEFLLKQTELFAH 110
Query: 322 XXXXIGTLSPGTSKLHEK---QRTNNDEVSASLCEVDVGTKGLDAQRKDELAEET 373
SP TS L+ K R D+ + + D + + + +EL E+
Sbjct: 111 FIQPSAQKSP-TSPLNIKLGRPRIKKDDKQSLISAGDYRHRRTEQEEDEELLSES 164
>UNIPROTKB|K7GLQ2 [details] [associations]
symbol:SMARCA1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=IEA] [GO:0031491
"nucleosome binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR000330
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR009057
InterPro:IPR015194 InterPro:IPR015195 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 Pfam:PF13892
PROSITE:PS51194 SMART:SM00490 SMART:SM00717 Gene3D:1.10.10.60
SUPFAM:SSF46689 InterPro:IPR017884 PROSITE:PS51293
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00680000100002 SUPFAM:SSF101224 EMBL:CU695129
RefSeq:XP_003135410.1 Ensembl:ENSSSCT00000033549 GeneID:100188905
Uniprot:K7GLQ2
Length = 1073
Score = 887 (317.3 bits), Expect = 1.7e-91, Sum P(2) = 1.7e-91
Identities = 218/543 (40%), Positives = 303/543 (55%)
Query: 696 KLDEPALEKYSHLTDLFVQFERQTLKKDASEDELPRGKGDCQQSEIVALTEQPEELKGGA 755
KL P ++K L + + + + EDE + + V P +KGG
Sbjct: 127 KLGRPRIKK-DDKQSLISAGDYRHRRTEQEEDEELLSESRKTSNVCVRFEVSPSYVKGGP 185
Query: 756 LFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLS 815
L +Q+ LNWL + N ILADEMGLGKT+ A + L P +VLVP S
Sbjct: 186 LRDYQIRGLNWLISLYENGVNGILADEMGLGKTLQTIALLGYLKHYRNIPGPHMVLVPKS 245
Query: 816 TMPNWLAEFALWAPNLNVVEYHGCAKARAIIRQYEWHASDPDNLNKKTSSYKFNVLLTTY 875
T+ NW+ EF W P+L V+ + G ARA + E + D V +T+Y
Sbjct: 246 TLHNWMNEFKRWVPSLRVICFVGDKDARAAFIRDEMMPGEWD------------VCVTSY 293
Query: 876 EMILADSSHLRGVPWEVLVVDEGHRXXXXXXXXXXXXXXXXXQHRVLLTGTPLQNNIGEM 935
EM++ + S + W LV+DE HR +R+LLTGTPLQNN+ E+
Sbjct: 294 EMVIKEKSVFKKFHWRYLVIDEAHRIKNEKSKLSEIVREFKSTNRLLLTGTPLQNNLHEL 353
Query: 936 YNLLNFLQPASFPSLSSFEEKF---NDLTTTQKVEELKKLVAPHMLRRLKKDAMQNIPPK 992
+ LLNFL P F S F+ F N L + VE L ++ P +LRR+K D +++PPK
Sbjct: 354 WALLNFLLPDVFNSADDFDSWFDTKNCLGDQKLVERLHAVLKPFLLRRIKTDVEKSLPPK 413
Query: 993 TERMVPVELSSIQAEYYRAMLTKNYQILRNIGKGVAQQSMLNIVMQLRKVCNHPYLIPGT 1052
E + + LS +Q E+Y +L K+ +L + GK + + +LNI+MQLRK CNHPYL G
Sbjct: 414 KEIKIYLGLSKMQREWYTKILMKDIDVLNSAGK-MDKMRLLNILMQLRKCCNHPYLFDGA 472
Query: 1053 EPDSGSVEFLHEMRIKASAKLTLLHSMLKVLYKEGHRVLIFSQMTKLLDILEDYL---NI 1109
EP G E + S K+ +L +L L ++G RVLIFSQMT+LLDILEDY
Sbjct: 473 EP--GPPYTTDEHIVSNSGKMVVLDKLLAKLKEQGSRVLIFSQMTRLLDILEDYCMWRGY 530
Query: 1110 EF----GPKTYE-RVDGSVSV---GDRQAAITRFN-QDKSRFVFLLSTRSCGLGINLATA 1160
E+ G +E R D + V G R+A I FN + SRF+F+LSTR+ GLGINLA+A
Sbjct: 531 EYCRLDGQTPHEEREDKFLEVELLGQREA-IEAFNVPNSSRFIFMLSTRAGGLGINLASA 589
Query: 1161 DTVIIYDSDFNPHADIQAMNRAHRIGQSKRLLVYRLVVRASVEERILQLAKKKLMLDQLF 1220
D VI+YDSD+NP D+QAM+RAHRIGQ K + V+RL+ +VEERI++ A+ KL LD +
Sbjct: 590 DVVILYDSDWNPQVDLQAMDRAHRIGQKKPVRVFRLITDNTVEERIVERAEIKLRLDSIV 649
Query: 1221 VNK 1223
+ +
Sbjct: 650 IQQ 652
Score = 275 (101.9 bits), Expect = 6.4e-20, Sum P(2) = 6.4e-20
Identities = 69/185 (37%), Positives = 108/185 (58%)
Query: 1105 DYLNIEFGPKTYERVDGSVSV---GDRQAAITRFN-QDKSRFVFLLSTRSCGLGINLATA 1160
+Y ++ ER D + V G R+A I FN + SRF+F+LSTR+ GLGINLA+A
Sbjct: 531 EYCRLDGQTPHEEREDKFLEVELLGQREA-IEAFNVPNSSRFIFMLSTRAGGLGINLASA 589
Query: 1161 DTVIIYDSDFNPHADIQAMNRAHRIGQSKRLLVYRLVVRASVEERILQLAKKKLMLDQLF 1220
D VI+YDSD+NP D+QAM+RAHRIGQ K + V+RL+ +VEERI++ A+ KL LD +
Sbjct: 590 DVVILYDSDWNPQVDLQAMDRAHRIGQKKPVRVFRLITDNTVEERIVERAEIKLRLDSIV 649
Query: 1221 VNKSG---------SQKEVEDILRWGTEELFNDSPG-INGKDMGENNTSIEEAVRDLEQK 1270
+ + +++E+ ++R G +F + +D+ E ++ ++
Sbjct: 650 IQQGRLIDQQSNKMAKEEMLQMIRHGATHVFASKESELTDEDITTLLERGERKTAEMNER 709
Query: 1271 HRKRG 1275
+K G
Sbjct: 710 LQKMG 714
Score = 57 (25.1 bits), Expect = 1.7e-91, Sum P(2) = 1.7e-91
Identities = 25/115 (21%), Positives = 46/115 (40%)
Query: 263 VPVEKHEKSSTNGSSGIKFVLAIGASERDRKRKPEVKDE-DSQKKLRVDXXXXXXXXXXX 321
V EK EK +S + LA AS+ +++ PE +++ + + R +
Sbjct: 51 VATEKGEKKKEKNASPFQLKLAAKASKSEKEMDPEYEEKMKADRAKRFEFLLKQTELFAH 110
Query: 322 XXXXIGTLSPGTSKLHEK---QRTNNDEVSASLCEVDVGTKGLDAQRKDELAEET 373
SP TS L+ K R D+ + + D + + + +EL E+
Sbjct: 111 FIQPSAQKSP-TSPLNIKLGRPRIKKDDKQSLISAGDYRHRRTEQEEDEELLSES 164
>UNIPROTKB|K7GMM0 [details] [associations]
symbol:SMARCA1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=IEA] [GO:0031491
"nucleosome binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR000330
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR009057
InterPro:IPR015194 InterPro:IPR015195 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 Pfam:PF13892
PROSITE:PS51194 SMART:SM00490 SMART:SM00717 Gene3D:1.10.10.60
SUPFAM:SSF46689 InterPro:IPR017884 PROSITE:PS51293
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00680000100002 SUPFAM:SSF101224 EMBL:CU695129
GeneID:100188905 RefSeq:XP_003360491.1 Ensembl:ENSSSCT00000034062
Uniprot:K7GMM0
Length = 1057
Score = 887 (317.3 bits), Expect = 1.7e-91, Sum P(2) = 1.7e-91
Identities = 218/543 (40%), Positives = 303/543 (55%)
Query: 696 KLDEPALEKYSHLTDLFVQFERQTLKKDASEDELPRGKGDCQQSEIVALTEQPEELKGGA 755
KL P ++K L + + + + EDE + + V P +KGG
Sbjct: 127 KLGRPRIKK-DDKQSLISAGDYRHRRTEQEEDEELLSESRKTSNVCVRFEVSPSYVKGGP 185
Query: 756 LFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLS 815
L +Q+ LNWL + N ILADEMGLGKT+ A + L P +VLVP S
Sbjct: 186 LRDYQIRGLNWLISLYENGVNGILADEMGLGKTLQTIALLGYLKHYRNIPGPHMVLVPKS 245
Query: 816 TMPNWLAEFALWAPNLNVVEYHGCAKARAIIRQYEWHASDPDNLNKKTSSYKFNVLLTTY 875
T+ NW+ EF W P+L V+ + G ARA + E + D V +T+Y
Sbjct: 246 TLHNWMNEFKRWVPSLRVICFVGDKDARAAFIRDEMMPGEWD------------VCVTSY 293
Query: 876 EMILADSSHLRGVPWEVLVVDEGHRXXXXXXXXXXXXXXXXXQHRVLLTGTPLQNNIGEM 935
EM++ + S + W LV+DE HR +R+LLTGTPLQNN+ E+
Sbjct: 294 EMVIKEKSVFKKFHWRYLVIDEAHRIKNEKSKLSEIVREFKSTNRLLLTGTPLQNNLHEL 353
Query: 936 YNLLNFLQPASFPSLSSFEEKF---NDLTTTQKVEELKKLVAPHMLRRLKKDAMQNIPPK 992
+ LLNFL P F S F+ F N L + VE L ++ P +LRR+K D +++PPK
Sbjct: 354 WALLNFLLPDVFNSADDFDSWFDTKNCLGDQKLVERLHAVLKPFLLRRIKTDVEKSLPPK 413
Query: 993 TERMVPVELSSIQAEYYRAMLTKNYQILRNIGKGVAQQSMLNIVMQLRKVCNHPYLIPGT 1052
E + + LS +Q E+Y +L K+ +L + GK + + +LNI+MQLRK CNHPYL G
Sbjct: 414 KEIKIYLGLSKMQREWYTKILMKDIDVLNSAGK-MDKMRLLNILMQLRKCCNHPYLFDGA 472
Query: 1053 EPDSGSVEFLHEMRIKASAKLTLLHSMLKVLYKEGHRVLIFSQMTKLLDILEDYL---NI 1109
EP G E + S K+ +L +L L ++G RVLIFSQMT+LLDILEDY
Sbjct: 473 EP--GPPYTTDEHIVSNSGKMVVLDKLLAKLKEQGSRVLIFSQMTRLLDILEDYCMWRGY 530
Query: 1110 EF----GPKTYE-RVDGSVSV---GDRQAAITRFN-QDKSRFVFLLSTRSCGLGINLATA 1160
E+ G +E R D + V G R+A I FN + SRF+F+LSTR+ GLGINLA+A
Sbjct: 531 EYCRLDGQTPHEEREDKFLEVELLGQREA-IEAFNVPNSSRFIFMLSTRAGGLGINLASA 589
Query: 1161 DTVIIYDSDFNPHADIQAMNRAHRIGQSKRLLVYRLVVRASVEERILQLAKKKLMLDQLF 1220
D VI+YDSD+NP D+QAM+RAHRIGQ K + V+RL+ +VEERI++ A+ KL LD +
Sbjct: 590 DVVILYDSDWNPQVDLQAMDRAHRIGQKKPVRVFRLITDNTVEERIVERAEIKLRLDSIV 649
Query: 1221 VNK 1223
+ +
Sbjct: 650 IQQ 652
Score = 275 (101.9 bits), Expect = 6.1e-20, Sum P(2) = 6.1e-20
Identities = 69/185 (37%), Positives = 108/185 (58%)
Query: 1105 DYLNIEFGPKTYERVDGSVSV---GDRQAAITRFN-QDKSRFVFLLSTRSCGLGINLATA 1160
+Y ++ ER D + V G R+A I FN + SRF+F+LSTR+ GLGINLA+A
Sbjct: 531 EYCRLDGQTPHEEREDKFLEVELLGQREA-IEAFNVPNSSRFIFMLSTRAGGLGINLASA 589
Query: 1161 DTVIIYDSDFNPHADIQAMNRAHRIGQSKRLLVYRLVVRASVEERILQLAKKKLMLDQLF 1220
D VI+YDSD+NP D+QAM+RAHRIGQ K + V+RL+ +VEERI++ A+ KL LD +
Sbjct: 590 DVVILYDSDWNPQVDLQAMDRAHRIGQKKPVRVFRLITDNTVEERIVERAEIKLRLDSIV 649
Query: 1221 VNKSG---------SQKEVEDILRWGTEELFNDSPG-INGKDMGENNTSIEEAVRDLEQK 1270
+ + +++E+ ++R G +F + +D+ E ++ ++
Sbjct: 650 IQQGRLIDQQSNKMAKEEMLQMIRHGATHVFASKESELTDEDITTLLERGERKTAEMNER 709
Query: 1271 HRKRG 1275
+K G
Sbjct: 710 LQKMG 714
Score = 57 (25.1 bits), Expect = 1.7e-91, Sum P(2) = 1.7e-91
Identities = 25/115 (21%), Positives = 46/115 (40%)
Query: 263 VPVEKHEKSSTNGSSGIKFVLAIGASERDRKRKPEVKDE-DSQKKLRVDXXXXXXXXXXX 321
V EK EK +S + LA AS+ +++ PE +++ + + R +
Sbjct: 51 VATEKGEKKKEKNASPFQLKLAAKASKSEKEMDPEYEEKMKADRAKRFEFLLKQTELFAH 110
Query: 322 XXXXIGTLSPGTSKLHEK---QRTNNDEVSASLCEVDVGTKGLDAQRKDELAEET 373
SP TS L+ K R D+ + + D + + + +EL E+
Sbjct: 111 FIQPSAQKSP-TSPLNIKLGRPRIKKDDKQSLISAGDYRHRRTEQEEDEELLSES 164
>MGI|MGI:1935127 [details] [associations]
symbol:Smarca1 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily a, member 1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000733 "DNA strand renaturation" evidence=ISO]
[GO:0000790 "nuclear chromatin" evidence=IDA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0006338 "chromatin
remodeling" evidence=ISO] [GO:0006351 "transcription,
DNA-dependent" evidence=ISO] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=TAS] [GO:0007420 "brain
development" evidence=ISO;IMP] [GO:0016568 "chromatin modification"
evidence=IEA] [GO:0016589 "NURF complex" evidence=ISO] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0016817 "hydrolase activity,
acting on acid anhydrides" evidence=IEA] [GO:0016818 "hydrolase
activity, acting on acid anhydrides, in phosphorus-containing
anhydrides" evidence=IEA] [GO:0030182 "neuron differentiation"
evidence=IMP] [GO:0031491 "nucleosome binding" evidence=IEA]
[GO:0036310 "annealing helicase activity" evidence=ISO] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=ISO] [GO:0045893
"positive regulation of transcription, DNA-dependent" evidence=ISO]
[GO:0070615 "nucleosome-dependent ATPase activity" evidence=ISO]
[GO:0090537 "CERF complex" evidence=ISO] [GO:2000177 "regulation of
neural precursor cell proliferation" evidence=IGI;IMP]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF09110
Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194 SMART:SM00490
SMART:SM00717 MGI:MGI:1935127 GO:GO:0005524 GO:GO:0005634
GO:GO:0045893 GO:GO:0007420 GO:GO:0030182 GO:GO:0003677
GO:GO:0006351 Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0006338
InterPro:IPR017884 PROSITE:PS51293 GO:GO:0004386 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0031491
GO:GO:0043044 GO:GO:0016589 GO:GO:0036310 GO:GO:0008094
GeneTree:ENSGT00680000100002 HOGENOM:HOG000192862 SUPFAM:SSF101224
CTD:6594 HOVERGEN:HBG056329 KO:K11727 EMBL:AF325920 EMBL:AK030741
EMBL:AL671903 EMBL:BC057115 IPI:IPI00314654 IPI:IPI00761324
RefSeq:NP_444353.3 UniGene:Mm.229151 HSSP:Q24368
ProteinModelPortal:Q6PGB8 SMR:Q6PGB8 STRING:Q6PGB8
PhosphoSite:Q6PGB8 PaxDb:Q6PGB8 PRIDE:Q6PGB8
Ensembl:ENSMUST00000077569 Ensembl:ENSMUST00000088973
Ensembl:ENSMUST00000101616 GeneID:93761 KEGG:mmu:93761
UCSC:uc009tbl.2 UCSC:uc009tbm.2 InParanoid:B1AUP6 OrthoDB:EOG44J2H9
NextBio:351647 Bgee:Q6PGB8 Genevestigator:Q6PGB8
GermOnline:ENSMUSG00000031099 Uniprot:Q6PGB8
Length = 1046
Score = 898 (321.2 bits), Expect = 2.8e-91, Sum P(2) = 2.8e-91
Identities = 214/532 (40%), Positives = 300/532 (56%)
Query: 696 KLDEPALEKYSHLTDLFVQFERQTLKKDASEDELPRGKGDCQQSEIVALTEQPEELKGGA 755
KL P ++K + + V R + + EDE + + V P +KGG
Sbjct: 128 KLARPRVKKDDKQSLISVGDYRHR-RTEQEEDEELLSESRKTSNVCVRFEVSPSYVKGGP 186
Query: 756 LFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLS 815
L +Q+ LNWL + N ILADEMGLGKT+ A + L P +VLVP S
Sbjct: 187 LRDYQIRGLNWLISLYENGVNGILADEMGLGKTLQTIALLGYLKHYRNIPGPHMVLVPKS 246
Query: 816 TMPNWLAEFALWAPNLNVVEYHGCAKARAIIRQYEWHASDPDNLNKKTSSYKFNVLLTTY 875
T+ NW+ EF W P+L V+ + G RA + E + D V +T+Y
Sbjct: 247 TLHNWMNEFKRWVPSLRVICFVGDKDVRAAFIRDEMMPGEWD------------VCVTSY 294
Query: 876 EMILADSSHLRGVPWEVLVVDEGHRXXXXXXXXXXXXXXXXXQHRVLLTGTPLQNNIGEM 935
EM++ + S + W LV+DE HR +R+LLTGTPLQNN+ E+
Sbjct: 295 EMVIKEKSVFKKFHWRYLVIDEAHRIKNEKSKLSEIVREFKSTNRLLLTGTPLQNNLHEL 354
Query: 936 YNLLNFLQPASFPSLSSFEEKF---NDLTTTQKVEELKKLVAPHMLRRLKKDAMQNIPPK 992
+ LLNFL P F S F+ F N L + VE L ++ P +LRR+K D +++PPK
Sbjct: 355 WALLNFLLPDVFNSADDFDSWFDTKNCLGDQKLVERLHAVLKPFLLRRIKTDVEKSLPPK 414
Query: 993 TERMVPVELSSIQAEYYRAMLTKNYQILRNIGKGVAQQSMLNIVMQLRKVCNHPYLIPGT 1052
E + + LS +Q E+Y +L K+ +L + GK + + +LNI+MQLRK CNHPYL G
Sbjct: 415 KEIKIYLGLSKMQREWYTKILMKDIDVLNSSGK-MDKMRLLNILMQLRKCCNHPYLFDGA 473
Query: 1053 EPDSGSVEFLHEMRIKASAKLTLLHSMLKVLYKEGHRVLIFSQMTKLLDILEDYLNIEFG 1112
EP G E + S K+ L +L + ++G RVLIFSQMT+LLDILEDY G
Sbjct: 474 EP--GPPYTTDEHIVGNSGKMVALDKLLARIKEQGSRVLIFSQMTRLLDILEDYCMWR-G 530
Query: 1113 PKTYERVDGSVSVGDRQAAITRFNQ-DKSRFVFLLSTRSCGLGINLATADTVIIYDSDFN 1171
+ Y R+DG +R+ AI FN + S+F+F+LSTR+ GLGINLA+AD VI+YDSD+N
Sbjct: 531 YE-YSRLDGQTPHEEREEAIDAFNAPNSSKFIFMLSTRAGGLGINLASADVVILYDSDWN 589
Query: 1172 PHADIQAMNRAHRIGQSKRLLVYRLVVRASVEERILQLAKKKLMLDQLFVNK 1223
P D+QAM+RAHRIGQ K + V+RL+ +VEERI++ A+ KL LD + + +
Sbjct: 590 PQVDLQAMDRAHRIGQKKPVRVFRLITDNTVEERIVERAEIKLRLDSIVIQQ 641
Score = 43 (20.2 bits), Expect = 2.8e-91, Sum P(2) = 2.8e-91
Identities = 13/45 (28%), Positives = 23/45 (51%)
Query: 266 EKHEKSSTNGSSGIKFVLAIGASERDRKRKPEVKDEDSQKKLRVD 310
EK EK +S + LA AS+ +++ PE +++ L+ D
Sbjct: 51 EKGEKKEKI-TSPFQLKLAAKASKSEKEMDPEYEEKMVNMPLKAD 94
Score = 40 (19.1 bits), Expect = 5.9e-91, Sum P(2) = 5.9e-91
Identities = 16/59 (27%), Positives = 25/59 (42%)
Query: 29 PGLSNGKEENLVTSESPRNTPSAKRRLKNEIN-------ADRSSTKKKGNDGYYYECVI 80
PG S KEE + + T + K K +I A ++S +K D Y E ++
Sbjct: 29 PGPSTFKEEGAAAAATEGTTATEKGEKKEKITSPFQLKLAAKASKSEKEMDPEYEEKMV 87
>TAIR|locus:2150270 [details] [associations]
symbol:CHR23 "chromatin remodeling 23" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0004386 "helicase activity" evidence=IEA;ISS] [GO:0005524 "ATP
binding" evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM]
[GO:0006259 "DNA metabolic process" evidence=RCA] [GO:0007062
"sister chromatid cohesion" evidence=RCA] [GO:0007126 "meiosis"
evidence=RCA] [GO:0009640 "photomorphogenesis" evidence=RCA]
[GO:0010388 "cullin deneddylation" evidence=RCA] [GO:0016567
"protein ubiquitination" evidence=RCA] [GO:0016571 "histone
methylation" evidence=RCA] [GO:0016579 "protein deubiquitination"
evidence=RCA] [GO:0031048 "chromatin silencing by small RNA"
evidence=RCA] [GO:0033044 "regulation of chromosome organization"
evidence=RCA] [GO:0045132 "meiotic chromosome segregation"
evidence=RCA] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=RCA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 EMBL:CP002688 GO:GO:0003677 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 KO:K11647
OMA:WAPSISA IPI:IPI00536400 RefSeq:NP_197432.2 UniGene:At.43995
ProteinModelPortal:F4K128 SMR:F4K128 PRIDE:F4K128
EnsemblPlants:AT5G19310.1 GeneID:832051 KEGG:ath:AT5G19310
PhylomeDB:F4K128 Uniprot:F4K128
Length = 1064
Score = 866 (309.9 bits), Expect = 5.4e-91, Sum P(3) = 5.4e-91
Identities = 213/554 (38%), Positives = 315/554 (56%)
Query: 744 LTEQPEELKGGALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFK 803
+T+QP L+GG L +QLE L W+ ++ N ILADEMGLGKT+ A I+ L
Sbjct: 374 VTKQPSLLQGGELRSYQLEGLQWMVSLYNNDYNGILADEMGLGKTIQTIALIAYLLESKD 433
Query: 804 AKLPCLVLVPLSTMPNWLAEFALWAPNLNVVEYHGCAKARAIIRQYEWHASDPDNLNKKT 863
P L+L P + +PNW EFALWAP+++ Y G + R IR +
Sbjct: 434 LHGPHLILAPKAVLPNWENEFALWAPSISAFLYDGSKEKRTEIRA-------------RI 480
Query: 864 SSYKFNVLLTTYEMILADSSHLRGVPWEVLVVDEGHRXXXXX-XXXXXXXXXXXXQHRVL 922
+ KFNVL+T Y++I+ D + L+ + W ++VDEGHR + R+L
Sbjct: 481 AGGKFNVLITHYDLIMRDKAFLKKIDWNYMIVDEGHRLKNHECALAKTLGTGYRIKRRLL 540
Query: 923 LTGTPLQNNIGEMYNLLNFLQPASFPSLSSFEEKFN---------DLTTTQK---VEELK 970
LTGTP+QN++ E+++LLNFL P F S+ +FEE FN LT ++ + L
Sbjct: 541 LTGTPIQNSLQELWSLLNFLLPHIFNSIHNFEEWFNTPFAECGSASLTDEEELLIINRLH 600
Query: 971 KLVAPHMLRRLKKDAMQNIPPKTERMVPVELSSIQAEYYRAMLTKNYQILRNIGKGVAQQ 1030
++ P +LRR K + + +P KT+ ++ ++S+ Q YY+ +T ++ + G G ++
Sbjct: 601 HVIRPFLLRRKKSEVEKFLPGKTQVILKCDMSAWQKLYYK-QVTDVGRVGLHSGNGKSK- 658
Query: 1031 SMLNIVMQLRKVCNHPYLIPGTEPDSGSVEFLHEMRIKASAKLTLLHSMLKVLYKEGHRV 1090
S+ N+ MQLRK CNHPYL G + + + ++AS K LL +L L K GHR+
Sbjct: 659 SLQNLTMQLRKCCNHPYLFVGADYNMCKKPEI----VRASGKFELLDRLLPKLKKAGHRI 714
Query: 1091 LIFSQMTKLLDILEDYLNIEFGPKTYERVDGSVSVGDRQAAITRFNQ-DKSRFVFLLSTR 1149
L+FSQMT+L+D+LE YL++ Y R+DGS R + +FN+ D F+FLLSTR
Sbjct: 715 LLFSQMTRLIDLLEIYLSLN--DYMYLRLDGSTKTDQRGILLKQFNEPDSPYFMFLLSTR 772
Query: 1150 SCGLGINLATADTVIIYDSDFNPHADIQAMNRAHRIGQSKRLLVYRLVVRASVEERILQL 1209
+ GLG+NL TADT+II+DSD+NP D QA +RAHRIGQ K + V+ LV S+EE IL+
Sbjct: 773 AGGLGLNLQTADTIIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSIGSIEEVILER 832
Query: 1210 AKKKLMLDQ------LFVNKSGSQ--KEV-EDILRWGTEELFNDSPGINGKDMGENNTSI 1260
AK+K+ +D LF S +Q +E+ E+I+ GT L D P + +++
Sbjct: 833 AKQKMGIDAKVIQAGLFNTTSTAQDRREMLEEIMSKGTSSLGEDVP--SEREINRLAART 890
Query: 1261 EEAVRDLEQKHRKR 1274
EE EQ +R
Sbjct: 891 EEEFWMFEQMDEER 904
Score = 51 (23.0 bits), Expect = 5.4e-91, Sum P(3) = 5.4e-91
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 1342 QAESPVAAVDDASAENSE-RKEENAVTGIEENE 1373
+AE+ ++ D+ E E RKEE+ EENE
Sbjct: 995 KAEAVLSESDEEKEEEEEERKEESGKESEEENE 1027
Score = 44 (20.5 bits), Expect = 5.4e-91, Sum P(3) = 5.4e-91
Identities = 15/49 (30%), Positives = 20/49 (40%)
Query: 190 KSLDSSQVDVSCSTKPENTSAGVPVEGSSSCPNDDDEKQLNASPTDSLA 238
K L S+ D+S PE+ +E S NDD L +LA
Sbjct: 318 KLLKGSESDLSDVDAPEDVLPAQDIEIIDSDNNDDSNDLLEGERQFNLA 366
>UNIPROTKB|F1P3Q4 [details] [associations]
symbol:SMARCA1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0031491 "nucleosome binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0007420 "brain development" evidence=IEA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IEA] [GO:0016589 "NURF
complex" evidence=IEA] [GO:0030182 "neuron differentiation"
evidence=IEA] [GO:0036310 "annealing helicase activity"
evidence=IEA] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=IEA] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 GO:GO:0005524 GO:GO:0045893
GO:GO:0003677 GO:GO:0006351 Gene3D:1.10.10.60 SUPFAM:SSF46689
InterPro:IPR017884 PROSITE:PS51293 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0031491 GO:GO:0043044
GO:GO:0016589 GO:GO:0008094 GeneTree:ENSGT00680000100002
SUPFAM:SSF101224 OMA:PMSQKRK EMBL:AADN02013587 EMBL:AADN02013588
IPI:IPI00594974 Ensembl:ENSGALT00000013737 Uniprot:F1P3Q4
Length = 982
Score = 898 (321.2 bits), Expect = 9.6e-91, Sum P(2) = 9.6e-91
Identities = 215/533 (40%), Positives = 301/533 (56%)
Query: 696 KLDEPALEKYSHLTDLFVQFERQTLKKDASEDELPRGKGDCQQSEIVALTEQPEELKGGA 755
KL P ++K L + + + + EDE + + + E P +KGG
Sbjct: 48 KLGRPRIKK-DEKQSLISAGDYRHRRTEQEEDEELLSESRKTSNVCIRFEESPSYVKGGT 106
Query: 756 LFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLS 815
L +Q+ LNW+ + N ILADEMGLGKT+ A + L P +VLVP S
Sbjct: 107 LRDYQVRGLNWMISLYENGVNGILADEMGLGKTLQTIALLGYLKHYRNIPGPHMVLVPKS 166
Query: 816 TMPNWLAEFALWAPNLNVVEYHGCAKARA-IIRQYEWHASDPDNLNKKTSSYKFNVLLTT 874
T+ NW+ EF W P+L V G ARA IR P +++V +T+
Sbjct: 167 TLHNWMNEFKRWVPSLRAVCLIGDKDARAAFIRDVMM----PG---------EWDVCVTS 213
Query: 875 YEMILADSSHLRGVPWEVLVVDEGHRXXXXXXXXXXXXXXXXXQHRVLLTGTPLQNNIGE 934
YEM++ + S + W LV+DE HR +R+LLTGTPLQNN+ E
Sbjct: 214 YEMVIKEKSVFKKFNWRYLVIDEAHRIKNEKSKLSEIVREFKTTNRLLLTGTPLQNNLHE 273
Query: 935 MYNLLNFLQPASFPSLSSFEEKF---NDLTTTQKVEELKKLVAPHMLRRLKKDAMQNIPP 991
++ LLNFL P F S F+ F N L + VE L ++ P +LRR+K + +++PP
Sbjct: 274 LWALLNFLLPDVFNSADDFDSWFDTKNCLGDQKLVERLHAVLKPFLLRRIKAEVEKSLPP 333
Query: 992 KTERMVPVELSSIQAEYYRAMLTKNYQILRNIGKGVAQQSMLNIVMQLRKVCNHPYLIPG 1051
K E + + LS +Q E+Y +L K+ IL + GK + + +LNI+MQLRK CNHPYL G
Sbjct: 334 KKEVKIYLGLSKMQREWYTRILMKDIDILNSAGK-MDKMRLLNILMQLRKCCNHPYLFDG 392
Query: 1052 TEPDSGSVEFLHEMRIKASAKLTLLHSMLKVLYKEGHRVLIFSQMTKLLDILEDYLNIEF 1111
EP H I S K+ +L +L L ++G RVL+FSQMT+LLDILEDY
Sbjct: 393 AEPGPPYTTDTH--LITNSGKMLVLDKLLAKLREQGSRVLLFSQMTRLLDILEDYCMWR- 449
Query: 1112 GPKTYERVDGSVSVGDRQAAITRFNQ-DKSRFVFLLSTRSCGLGINLATADTVIIYDSDF 1170
G + Y R+DG +R+ AI FN + S+F+F+LSTR+ GLGINLATAD VI+YDSD+
Sbjct: 450 GYE-YCRLDGQTPHEEREEAIDTFNAPNSSKFIFMLSTRAGGLGINLATADVVILYDSDW 508
Query: 1171 NPHADIQAMNRAHRIGQSKRLLVYRLVVRASVEERILQLAKKKLMLDQLFVNK 1223
NP D+QAM+RAHRIGQ K + V+RL+ +VEERI++ A+ KL LD + + +
Sbjct: 509 NPQVDLQAMDRAHRIGQKKPVRVFRLITDNTVEERIVERAEIKLRLDSIVIQQ 561
Score = 38 (18.4 bits), Expect = 9.6e-91, Sum P(2) = 9.6e-91
Identities = 28/119 (23%), Positives = 50/119 (42%)
Query: 1250 GKDMGENNTSIEEAVRDLEQKHRKRGGGLGDVYQD--KCTEGSTKIVWDENAIARLLDRS 1307
G + G+N T EE R L K G +VY++ +C + + +D +R
Sbjct: 867 GTNKGKNYT--EEEDRFLICMLHKMGFDKENVYEELRQCVRNAPQFRFDWFIKSRTAMEF 924
Query: 1308 NLQSGSTDLAEGDLENDMLGSVKATEWNEETTEDQAESPVAAVDDASAENSERKEENAV 1366
+ +T ++ + EN + + E + + A A D +AENS +K+ V
Sbjct: 925 QRRC-NTLISLIEKENMEIEEKERAEKKKRGAKVTASQKRKA--DLAAENSGKKDAKKV 980
>UNIPROTKB|P28370 [details] [associations]
symbol:SMARCA1 "Probable global transcription activator
SNF2L1" species:9606 "Homo sapiens" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0031491 "nucleosome binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0016589 "NURF complex" evidence=IDA]
[GO:0036310 "annealing helicase activity" evidence=IDA] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=IDA] [GO:0070615
"nucleosome-dependent ATPase activity" evidence=IDA] [GO:0090537
"CERF complex" evidence=IDA] [GO:0030182 "neuron differentiation"
evidence=ISS] [GO:0006338 "chromatin remodeling" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=IDA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IDA] [GO:0007420 "brain development" evidence=IMP]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=IMP] [GO:0006351 "transcription, DNA-dependent"
evidence=IMP] [GO:0000733 "DNA strand renaturation" evidence=IDA]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF09110
Pfam:PF09111 Pfam:PF13892 PROSITE:PS00690 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 GO:GO:0005524 GO:GO:0045893
GO:GO:0007420 GO:GO:0030182 GO:GO:0003677 GO:GO:0006351
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0031491 GO:GO:0043044
GO:GO:0016589 GO:GO:0036310 ChiTaRS:SMARCA1 SUPFAM:SSF101224
EMBL:AL138745 EMBL:M88163 EMBL:M89907 EMBL:AL022577 EMBL:BC117447
IPI:IPI00216046 IPI:IPI00646130 PIR:S35457 PIR:S35458
RefSeq:NP_003060.2 RefSeq:NP_620604.2 UniGene:Hs.152292
ProteinModelPortal:P28370 SMR:P28370 IntAct:P28370
MINT:MINT-2802155 STRING:P28370 PhosphoSite:P28370 DMDM:115311627
PaxDb:P28370 PRIDE:P28370 Ensembl:ENST00000371121
Ensembl:ENST00000371122 Ensembl:ENST00000371123 GeneID:6594
KEGG:hsa:6594 UCSC:uc004eun.4 UCSC:uc004eup.4 CTD:6594
GeneCards:GC0XM128580 HGNC:HGNC:11097 HPA:HPA003335 MIM:300012
neXtProt:NX_P28370 PharmGKB:PA35947 HOVERGEN:HBG056329
InParanoid:P28370 KO:K11727 OMA:PMSQKRK PhylomeDB:P28370
GenomeRNAi:6594 NextBio:25645 ArrayExpress:P28370 Bgee:P28370
CleanEx:HS_SMARCA1 Genevestigator:P28370 GermOnline:ENSG00000102038
Uniprot:P28370
Length = 1054
Score = 883 (315.9 bits), Expect = 1.6e-90, Sum P(2) = 1.6e-90
Identities = 216/543 (39%), Positives = 303/543 (55%)
Query: 696 KLDEPALEKYSHLTDLFVQFERQTLKKDASEDELPRGKGDCQQSEIVALTEQPEELKGGA 755
KL P ++K L + + + + EDE + + + P +KGG
Sbjct: 124 KLGRPRIKK-DEKQSLISAGDYRHRRTEQEEDEELLSESRKTSNVCIRFEVSPSYVKGGP 182
Query: 756 LFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLS 815
L +Q+ LNWL + N ILADEMGLGKT+ A + L P +VLVP S
Sbjct: 183 LRDYQIRGLNWLISLYENGVNGILADEMGLGKTLQTIALLGYLKHYRNIPGPHMVLVPKS 242
Query: 816 TMPNWLAEFALWAPNLNVVEYHGCAKARAIIRQYEWHASDPDNLNKKTSSYKFNVLLTTY 875
T+ NW+ EF W P+L V+ + G ARA + E + D V +T+Y
Sbjct: 243 TLHNWMNEFKRWVPSLRVICFVGDKDARAAFIRDEMMPGEWD------------VCVTSY 290
Query: 876 EMILADSSHLRGVPWEVLVVDEGHRXXXXXXXXXXXXXXXXXQHRVLLTGTPLQNNIGEM 935
EM++ + S + W LV+DE HR +R+LLTGTPLQNN+ E+
Sbjct: 291 EMVIKEKSVFKKFHWRYLVIDEAHRIKNEKSKLSEIVREFKSTNRLLLTGTPLQNNLHEL 350
Query: 936 YNLLNFLQPASFPSLSSFEEKF---NDLTTTQKVEELKKLVAPHMLRRLKKDAMQNIPPK 992
+ LLNFL P F S F+ F N L + VE L ++ P +LRR+K D +++PPK
Sbjct: 351 WALLNFLLPDVFNSADDFDSWFDTKNCLGDQKLVERLHAVLKPFLLRRIKTDVEKSLPPK 410
Query: 993 TERMVPVELSSIQAEYYRAMLTKNYQILRNIGKGVAQQSMLNIVMQLRKVCNHPYLIPGT 1052
E + + LS +Q E+Y +L K+ +L + GK + + +LNI+MQLRK CNHPYL G
Sbjct: 411 KEIKIYLGLSKMQREWYTKILMKDIDVLNSSGK-MDKMRLLNILMQLRKCCNHPYLFDGA 469
Query: 1053 EPDSGSVEFLHEMRIKASAKLTLLHSMLKVLYKEGHRVLIFSQMTKLLDILEDYL---NI 1109
EP G E + S K+ +L +L L ++G RVLIFSQMT+LLDILEDY
Sbjct: 470 EP--GPPYTTDEHIVSNSGKMVVLDKLLAKLKEQGSRVLIFSQMTRLLDILEDYCMWRGY 527
Query: 1110 EF----GPKTYE-RVDGSVSV---GDRQAAITRFNQ-DKSRFVFLLSTRSCGLGINLATA 1160
E+ G +E R D + V G R+A I FN + S+F+F+LSTR+ GLGINLA+A
Sbjct: 528 EYCRLDGQTPHEEREDKFLEVEFLGQREA-IEAFNAPNSSKFIFMLSTRAGGLGINLASA 586
Query: 1161 DTVIIYDSDFNPHADIQAMNRAHRIGQSKRLLVYRLVVRASVEERILQLAKKKLMLDQLF 1220
D VI+YDSD+NP D+QAM+RAHRIGQ K + V+RL+ +VEERI++ A+ KL LD +
Sbjct: 587 DVVILYDSDWNPQVDLQAMDRAHRIGQKKPVRVFRLITDNTVEERIVERAEIKLRLDSIV 646
Query: 1221 VNK 1223
+ +
Sbjct: 647 IQQ 649
Score = 273 (101.2 bits), Expect = 3.3e-19, Sum P(2) = 3.3e-19
Identities = 68/185 (36%), Positives = 109/185 (58%)
Query: 1105 DYLNIEFGPKTYERVDGSVSV---GDRQAAITRFNQ-DKSRFVFLLSTRSCGLGINLATA 1160
+Y ++ ER D + V G R+A I FN + S+F+F+LSTR+ GLGINLA+A
Sbjct: 528 EYCRLDGQTPHEEREDKFLEVEFLGQREA-IEAFNAPNSSKFIFMLSTRAGGLGINLASA 586
Query: 1161 DTVIIYDSDFNPHADIQAMNRAHRIGQSKRLLVYRLVVRASVEERILQLAKKKLMLDQLF 1220
D VI+YDSD+NP D+QAM+RAHRIGQ K + V+RL+ +VEERI++ A+ KL LD +
Sbjct: 587 DVVILYDSDWNPQVDLQAMDRAHRIGQKKPVRVFRLITDNTVEERIVERAEIKLRLDSIV 646
Query: 1221 VNKSG---------SQKEVEDILRWGTEELFNDSPG-INGKDMGENNTSIEEAVRDLEQK 1270
+ + +++E+ ++R G +F + +D+ E+ ++ ++
Sbjct: 647 IQQGRLIDQQSNKLAKEEMLQMIRHGATHVFASKESELTDEDITTILERGEKKTAEMNER 706
Query: 1271 HRKRG 1275
+K G
Sbjct: 707 LQKMG 711
Score = 52 (23.4 bits), Expect = 1.6e-90, Sum P(2) = 1.6e-90
Identities = 24/112 (21%), Positives = 43/112 (38%)
Query: 266 EKHEKSSTNGSSGIKFVLAIGASERDRKRKPEVKDE-DSQKKLRVDXXXXXXXXXXXXXX 324
EK EK S + LA A + +++ PE +++ + + R +
Sbjct: 51 EKGEKKKEKNVSSFQLKLAAKAPKSEKEMDPEYEEKMKADRAKRFEFLLKQTELFAHFIQ 110
Query: 325 XIGTLSPGTSKLHEK---QRTNNDEVSASLCEVDVGTKGLDAQRKDELAEET 373
SP TS L+ K R DE + + D + + + +EL E+
Sbjct: 111 PSAQKSP-TSPLNMKLGRPRIKKDEKQSLISAGDYRHRRTEQEEDEELLSES 161
Score = 37 (18.1 bits), Expect = 6.2e-89, Sum P(2) = 6.2e-89
Identities = 10/39 (25%), Positives = 14/39 (35%)
Query: 29 PGLSNGKEENLVTSESPRNTPSAKRRLKNEINADRSSTK 67
PG S +EE + + + K K E N K
Sbjct: 29 PGPSTSQEEGAAAAATEATAATEKGEKKKEKNVSSFQLK 67
>UNIPROTKB|E1C0M8 [details] [associations]
symbol:SMARCA5 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0004386 "helicase activity" evidence=IEA]
[GO:0031491 "nucleosome binding" evidence=IEA] [GO:0000183
"chromatin silencing at rDNA" evidence=IEA] [GO:0000793 "condensed
chromosome" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005677 "chromatin
silencing complex" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0006302 "double-strand break repair"
evidence=IEA] [GO:0006334 "nucleosome assembly" evidence=IEA]
[GO:0006352 "DNA-dependent transcription, initiation" evidence=IEA]
[GO:0009790 "embryo development" evidence=IEA] [GO:0016584
"nucleosome positioning" evidence=IEA] [GO:0016589 "NURF complex"
evidence=IEA] [GO:0016887 "ATPase activity" evidence=IEA]
[GO:0031213 "RSF complex" evidence=IEA] [GO:0042393 "histone
binding" evidence=IEA] [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=IEA] [GO:0043596 "nuclear replication fork"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 GO:GO:0005524 GO:GO:0005730
GO:GO:0003677 GO:GO:0006352 GO:GO:0016887 Gene3D:1.10.10.60
SUPFAM:SSF46689 GO:GO:0043596 InterPro:IPR017884 PROSITE:PS51293
GO:GO:0000183 GO:GO:0006302 GO:GO:0004386 GO:GO:0000793
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0031491
GO:GO:0043044 GO:GO:0016584 GO:GO:0006334 GO:GO:0005677
GO:GO:0016589 GeneTree:ENSGT00680000100002 SUPFAM:SSF101224
OMA:EDYCHWR GO:GO:0031213 EMBL:AADN02016239 EMBL:AADN02016240
IPI:IPI00577188 Ensembl:ENSGALT00000016121 ArrayExpress:E1C0M8
Uniprot:E1C0M8
Length = 1038
Score = 885 (316.6 bits), Expect = 3.2e-90, Sum P(2) = 3.2e-90
Identities = 207/500 (41%), Positives = 293/500 (58%)
Query: 746 EQPEELKGGALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKAK 805
E P +K G L +Q+ LNWL + N ILADEMGLGKT+ + + +
Sbjct: 155 ESPSYVKWGKLRDYQVRGLNWLISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIP 214
Query: 806 LPCLVLVPLSTMPNWLAEFALWAPNLNVVEYHGCAKARAIIRQYEWHASDPDNLNKKTSS 865
P +VLVP ST+ NW+ EF W P L V G RA + D L
Sbjct: 215 GPHMVLVPKSTLHNWMNEFKRWVPTLRAVCLIGDKDQRAAFVR--------DVLLPG--- 263
Query: 866 YKFNVLLTTYEMILADSSHLRGVPWEVLVVDEGHRXXXXXXXXXXXXXXXXXQHRVLLTG 925
+++V +T+YEM++ + S + W LV+DE HR +R+LLTG
Sbjct: 264 -EWDVCVTSYEMLIKEKSVFKKFNWRYLVIDEAHRIKNEKSKLSEIVREFKTTNRLLLTG 322
Query: 926 TPLQNNIGEMYNLLNFLQPASFPSLSSFEEKF--NDLTTTQK-VEELKKLVAPHMLRRLK 982
TPLQNN+ E++ LLNFL P F S F+ F N+ QK VE L ++ P +LRR+K
Sbjct: 323 TPLQNNLHELWALLNFLLPDVFNSSEDFDSWFDTNNCLGDQKLVERLHMVLRPFLLRRIK 382
Query: 983 KDAMQNIPPKTERMVPVELSSIQAEYYRAMLTKNYQILRNIGKGVAQQSMLNIVMQLRKV 1042
D +++PPK E + V LS +Q E+Y +L K+ IL + GK + + +LNI+MQLRK
Sbjct: 383 ADVEKSLPPKKEVKIYVGLSKMQREWYTRILMKDIDILNSAGK-LDKMRLLNILMQLRKC 441
Query: 1043 CNHPYLIPGTEPDSGSVEFLHEMRIKASAKLTLLHSMLKVLYKEGHRVLIFSQMTKLLDI 1102
CNHPYL G EP +H + S K+ +L +L L ++G RVLIFSQMT++LDI
Sbjct: 442 CNHPYLFDGAEPGPPYTTDMH--LVTNSGKMVVLDKLLPKLKEQGSRVLIFSQMTRVLDI 499
Query: 1103 LEDYLNIEFGPKTYERVDGSVSVGDRQAAITRFNQD-KSRFVFLLSTRSCGLGINLATAD 1161
LEDY + Y R+DG +RQA+I +N+ S+FVF+LSTR+ GLGINLATAD
Sbjct: 500 LEDYCM--WRNYEYCRLDGQTPHDERQASINAYNEPGSSKFVFMLSTRAGGLGINLATAD 557
Query: 1162 TVIIYDSDFNPHADIQAMNRAHRIGQSKRLLVYRLVVRASVEERILQLAKKKLMLDQLFV 1221
VI+YDSD+NP D+QAM+RAHRIGQ+K + V+R + +VEERI++ A+ KL LD + +
Sbjct: 558 VVILYDSDWNPQVDLQAMDRAHRIGQTKTVRVFRFITDNTVEERIVERAEMKLRLDSIVI 617
Query: 1222 NKSGSQKEVEDILRWGTEEL 1241
+ G + +++ + G +E+
Sbjct: 618 QQ-GRLVD-QNLNKLGKDEM 635
Score = 47 (21.6 bits), Expect = 3.2e-90, Sum P(2) = 3.2e-90
Identities = 12/46 (26%), Positives = 25/46 (54%)
Query: 1208 QLAKKKLMLDQLFVN--KSGSQKEVEDILRWGTEELFNDSPGINGK 1251
+L +K+ +L Q F N K + ++ +WG +++ N + + GK
Sbjct: 815 ELEEKEKLLTQGFTNWNKRDFNQFIKANEKWGRDDIENIAREVEGK 860
>UNIPROTKB|E2QWV0 [details] [associations]
symbol:SMARCA5 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0043596 "nuclear replication fork"
evidence=IEA] [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=IEA] [GO:0042393 "histone binding" evidence=IEA]
[GO:0031213 "RSF complex" evidence=IEA] [GO:0016887 "ATPase
activity" evidence=IEA] [GO:0016589 "NURF complex" evidence=IEA]
[GO:0016584 "nucleosome positioning" evidence=IEA] [GO:0009790
"embryo development" evidence=IEA] [GO:0006352 "DNA-dependent
transcription, initiation" evidence=IEA] [GO:0006334 "nucleosome
assembly" evidence=IEA] [GO:0006302 "double-strand break repair"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0005677
"chromatin silencing complex" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0000793 "condensed chromosome" evidence=IEA] [GO:0000183
"chromatin silencing at rDNA" evidence=IEA] [GO:0031491 "nucleosome
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 GO:GO:0005524 GO:GO:0005730
GO:GO:0003677 GO:GO:0006352 GO:GO:0016887 Gene3D:1.10.10.60
SUPFAM:SSF46689 GO:GO:0009790 GO:GO:0043596 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0000183 GO:GO:0006302 GO:GO:0004386
GO:GO:0000793 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0031491 GO:GO:0043044 GO:GO:0016584 GO:GO:0006334
GO:GO:0005677 GO:GO:0016589 GeneTree:ENSGT00680000100002 KO:K11654
SUPFAM:SSF101224 OMA:EDYCHWR GO:GO:0031213 CTD:8467
EMBL:AAEX03010002 RefSeq:XP_532676.1 ProteinModelPortal:E2QWV0
Ensembl:ENSCAFT00000012062 GeneID:475451 KEGG:cfa:475451
NextBio:20851293 Uniprot:E2QWV0
Length = 1052
Score = 883 (315.9 bits), Expect = 5.4e-90, Sum P(2) = 5.4e-90
Identities = 202/482 (41%), Positives = 285/482 (59%)
Query: 746 EQPEELKGGALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKAK 805
+ P +K G L +Q+ LNWL + N ILADEMGLGKT+ + + +
Sbjct: 170 DSPSYVKWGKLRDYQVRGLNWLISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIP 229
Query: 806 LPCLVLVPLSTMPNWLAEFALWAPNLNVVEYHGCAKARAIIRQYEWHASDPDNLNKKTSS 865
P +VLVP ST+ NW++EF W P L V G + RA + D L
Sbjct: 230 GPHMVLVPKSTLHNWMSEFKRWVPTLRSVCLIGDKEQRAAFVR--------DVLLPG--- 278
Query: 866 YKFNVLLTTYEMILADSSHLRGVPWEVLVVDEGHRXXXXXXXXXXXXXXXXXQHRVLLTG 925
+++V +T+YEM++ + S + W LV+DE HR +R+LLTG
Sbjct: 279 -EWDVCVTSYEMLIKEKSVFKKFNWRYLVIDEAHRIKNEKSKLSEIVREFKTTNRLLLTG 337
Query: 926 TPLQNNIGEMYNLLNFLQPASFPSLSSFEEKF--NDLTTTQK-VEELKKLVAPHMLRRLK 982
TPLQNN+ E+++LLNFL P F S F+ F N+ QK VE L ++ P +LRR+K
Sbjct: 338 TPLQNNLHELWSLLNFLLPDVFNSADDFDSWFDTNNCLGDQKLVERLHMVLRPFLLRRIK 397
Query: 983 KDAMQNIPPKTERMVPVELSSIQAEYYRAMLTKNYQILRNIGKGVAQQSMLNIVMQLRKV 1042
D +++PPK E + V LS +Q E+Y +L K+ IL + GK + + +LNI+MQLRK
Sbjct: 398 ADVEKSLPPKKEVKIYVGLSKMQREWYTRILMKDIDILNSAGK-MDKMRLLNILMQLRKC 456
Query: 1043 CNHPYLIPGTEPDSGSVEFLHEMRIKASAKLTLLHSMLKVLYKEGHRVLIFSQMTKLLDI 1102
CNHPYL G EP +H + S K+ +L +L L ++G RVLIFSQMT++LDI
Sbjct: 457 CNHPYLFDGAEPGPPYTTDMH--LVTNSGKMVVLDKLLPKLKEQGSRVLIFSQMTRVLDI 514
Query: 1103 LEDYLNIEFGPKTYERVDGSVSVGDRQAAITRFNQDKS-RFVFLLSTRSCGLGINLATAD 1161
LEDY + Y R+DG +RQ +I +N+ S +FVF+LSTR+ GLGINLATAD
Sbjct: 515 LEDYCM--WRNYEYCRLDGQTPHDERQESINAYNEPNSTKFVFMLSTRAGGLGINLATAD 572
Query: 1162 TVIIYDSDFNPHADIQAMNRAHRIGQSKRLLVYRLVVRASVEERILQLAKKKLMLDQLFV 1221
VI+YDSD+NP D+QAM+RAHRIGQ+K + V+R + +VEERI++ A+ KL LD + +
Sbjct: 573 VVILYDSDWNPQVDLQAMDRAHRIGQTKTVRVFRFITDNTVEERIVERAEMKLRLDSIVI 632
Query: 1222 NK 1223
+
Sbjct: 633 QQ 634
Score = 47 (21.6 bits), Expect = 5.4e-90, Sum P(2) = 5.4e-90
Identities = 12/46 (26%), Positives = 25/46 (54%)
Query: 1208 QLAKKKLMLDQLFVN--KSGSQKEVEDILRWGTEELFNDSPGINGK 1251
+L +K+ +L Q F N K + ++ +WG +++ N + + GK
Sbjct: 830 ELEEKEKLLTQGFTNWNKRDFNQFIKANEKWGRDDIENIAREVEGK 875
>UNIPROTKB|O60264 [details] [associations]
symbol:SMARCA5 "SWI/SNF-related matrix-associated
actin-dependent regulator of chromatin subfamily A member 5"
species:9606 "Homo sapiens" [GO:0031491 "nucleosome binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0000183 "chromatin silencing at rDNA" evidence=IEA] [GO:0005677
"chromatin silencing complex" evidence=IEA] [GO:0006302
"double-strand break repair" evidence=IEA] [GO:0009790 "embryo
development" evidence=IEA] [GO:0006334 "nucleosome assembly"
evidence=IDA;TAS] [GO:0016887 "ATPase activity" evidence=IDA]
[GO:0003677 "DNA binding" evidence=IDA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0006338 "chromatin remodeling" evidence=IDA]
[GO:0006352 "DNA-dependent transcription, initiation" evidence=IDA]
[GO:0016584 "nucleosome positioning" evidence=IDA] [GO:0031213 "RSF
complex" evidence=IPI] [GO:0042393 "histone binding" evidence=IDA]
[GO:0005524 "ATP binding" evidence=IDA] [GO:0000793 "condensed
chromosome" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0016589 "NURF complex" evidence=IDA] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0034080
"CENP-A containing nucleosome assembly at centromere" evidence=TAS]
[GO:0043596 "nuclear replication fork" evidence=IDA] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=IMP] [GO:0006200 "ATP
catabolic process" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 Pfam:PF13892 PROSITE:PS00690
PROSITE:PS51194 SMART:SM00490 SMART:SM00717 GO:GO:0005524
Reactome:REACT_115566 GO:GO:0005654 GO:GO:0005730 GO:GO:0003677
GO:GO:0006352 GO:GO:0006357 GO:GO:0016887 Gene3D:1.10.10.60
SUPFAM:SSF46689 GO:GO:0009790 InterPro:IPR017884 PROSITE:PS51293
GO:GO:0000183 GO:GO:0006302 GO:GO:0004386 GO:GO:0000793
GO:GO:0034080 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0031491 GO:GO:0016584 GO:GO:0005677
GO:GO:0016589 HOGENOM:HOG000192862 KO:K11654 SUPFAM:SSF101224
OMA:EDYCHWR GO:GO:0031213 HOVERGEN:HBG056329 OrthoDB:EOG44J2H9
EMBL:AB010882 EMBL:BC023144 IPI:IPI00297211 RefSeq:NP_003592.3
UniGene:Hs.558422 ProteinModelPortal:O60264 SMR:O60264
IntAct:O60264 MINT:MINT-2981772 STRING:O60264 PhosphoSite:O60264
PaxDb:O60264 PeptideAtlas:O60264 PRIDE:O60264 DNASU:8467
Ensembl:ENST00000283131 GeneID:8467 KEGG:hsa:8467 UCSC:uc003ijg.3
CTD:8467 GeneCards:GC04P144434 HGNC:HGNC:11101 HPA:CAB005227
HPA:HPA008751 MIM:603375 neXtProt:NX_O60264 PharmGKB:PA35951
InParanoid:O60264 PhylomeDB:O60264 GenomeRNAi:8467 NextBio:31688
ArrayExpress:O60264 Bgee:O60264 CleanEx:HS_SMARCA5
Genevestigator:O60264 GermOnline:ENSG00000153147 Uniprot:O60264
Length = 1052
Score = 882 (315.5 bits), Expect = 7.0e-90, Sum P(2) = 7.0e-90
Identities = 202/482 (41%), Positives = 285/482 (59%)
Query: 746 EQPEELKGGALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKAK 805
+ P +K G L +Q+ LNWL + N ILADEMGLGKT+ + + +
Sbjct: 170 DSPSYVKWGKLRDYQVRGLNWLISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIP 229
Query: 806 LPCLVLVPLSTMPNWLAEFALWAPNLNVVEYHGCAKARAIIRQYEWHASDPDNLNKKTSS 865
P +VLVP ST+ NW++EF W P L V G + RA + D L
Sbjct: 230 GPHMVLVPKSTLHNWMSEFKRWVPTLRSVCLIGDKEQRAAFVR--------DVLLPG--- 278
Query: 866 YKFNVLLTTYEMILADSSHLRGVPWEVLVVDEGHRXXXXXXXXXXXXXXXXXQHRVLLTG 925
+++V +T+YEM++ + S + W LV+DE HR +R+LLTG
Sbjct: 279 -EWDVCVTSYEMLIKEKSVFKKFNWRYLVIDEAHRIKNEKSKLSEIVREFKTTNRLLLTG 337
Query: 926 TPLQNNIGEMYNLLNFLQPASFPSLSSFEEKF--NDLTTTQK-VEELKKLVAPHMLRRLK 982
TPLQNN+ E+++LLNFL P F S F+ F N+ QK VE L ++ P +LRR+K
Sbjct: 338 TPLQNNLHELWSLLNFLLPDVFNSADDFDSWFDTNNCLGDQKLVERLHMVLRPFLLRRIK 397
Query: 983 KDAMQNIPPKTERMVPVELSSIQAEYYRAMLTKNYQILRNIGKGVAQQSMLNIVMQLRKV 1042
D +++PPK E + V LS +Q E+Y +L K+ IL + GK + + +LNI+MQLRK
Sbjct: 398 ADVEKSLPPKKEVKIYVGLSKMQREWYTRILMKDIDILNSAGK-MDKMRLLNILMQLRKC 456
Query: 1043 CNHPYLIPGTEPDSGSVEFLHEMRIKASAKLTLLHSMLKVLYKEGHRVLIFSQMTKLLDI 1102
CNHPYL G EP +H + S K+ +L +L L ++G RVLIFSQMT++LDI
Sbjct: 457 CNHPYLFDGAEPGPPYTTDMH--LVTNSGKMVVLDKLLPKLKEQGSRVLIFSQMTRVLDI 514
Query: 1103 LEDYLNIEFGPKTYERVDGSVSVGDRQAAITRFNQDKS-RFVFLLSTRSCGLGINLATAD 1161
LEDY + Y R+DG +RQ +I +N+ S +FVF+LSTR+ GLGINLATAD
Sbjct: 515 LEDYCM--WRNYEYCRLDGQTPHDERQDSINAYNEPNSTKFVFMLSTRAGGLGINLATAD 572
Query: 1162 TVIIYDSDFNPHADIQAMNRAHRIGQSKRLLVYRLVVRASVEERILQLAKKKLMLDQLFV 1221
VI+YDSD+NP D+QAM+RAHRIGQ+K + V+R + +VEERI++ A+ KL LD + +
Sbjct: 573 VVILYDSDWNPQVDLQAMDRAHRIGQTKTVRVFRFITDNTVEERIVERAEMKLRLDSIVI 632
Query: 1222 NK 1223
+
Sbjct: 633 QQ 634
Score = 47 (21.6 bits), Expect = 7.0e-90, Sum P(2) = 7.0e-90
Identities = 12/46 (26%), Positives = 25/46 (54%)
Query: 1208 QLAKKKLMLDQLFVN--KSGSQKEVEDILRWGTEELFNDSPGINGK 1251
+L +K+ +L Q F N K + ++ +WG +++ N + + GK
Sbjct: 830 ELEEKEKLLTQGFTNWNKRDFNQFIKANEKWGRDDIENIAREVEGK 875
>UNIPROTKB|E2QVR5 [details] [associations]
symbol:SMARCA1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=IEA] [GO:0031491 "nucleosome binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF09110
Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194 SMART:SM00490
SMART:SM00717 GO:GO:0005524 GO:GO:0003677 Gene3D:1.10.10.60
SUPFAM:SSF46689 InterPro:IPR017884 PROSITE:PS51293 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0016585
GO:GO:0031491 GO:GO:0043044 SUPFAM:SSF101224
Ensembl:ENSCAFT00000029649 Uniprot:E2QVR5
Length = 1073
Score = 888 (317.7 bits), Expect = 1.3e-89, Sum P(2) = 1.3e-89
Identities = 217/537 (40%), Positives = 301/537 (56%)
Query: 696 KLDEPALEK--YSHLTDLFVQFERQTLKKDASEDELPRGKGDCQQSEIVALTEQPEELKG 753
KL P ++K L F + + + EDE + + V P +KG
Sbjct: 133 KLGRPRIKKDDKQSLISAGEYFSYRHRRTEQEEDEELLSESRKTSNVCVRFEVSPSYVKG 192
Query: 754 GALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVP 813
G L +Q+ LNWL + N ILADEMGLGKT+ A + L P +VLVP
Sbjct: 193 GPLRDYQIRGLNWLISLYENGVNGILADEMGLGKTLQTIALLGYLKHYRNIPGPHMVLVP 252
Query: 814 LSTMPNWLAEFALWAPNLNVVEYHGCAKARAIIRQYEWHASDPDNLNKKTSSYKFNVLLT 873
ST+ NW+ EF W P+L V+ + G ARA + E + D V +T
Sbjct: 253 KSTLYNWMNEFKRWVPSLRVICFVGDKDARAAFIRDEMMPGEWD------------VCVT 300
Query: 874 TYEMILADSSHLRGVPWEVLVVDEGHRXXXXXXXXXXXXXXXXXQHRVLLTGTPLQNNIG 933
+YEM++ + S + W LV+DE HR +R+LLTGTPLQNN+
Sbjct: 301 SYEMVIKEKSVFKKFHWRYLVIDEAHRIKNEKSKLSEIVREFKSTNRLLLTGTPLQNNLH 360
Query: 934 EMYNLLNFLQPASFPSLSSFEEKF---NDLTTTQKVEELKKLVAPHMLRRLKKDAMQNIP 990
E++ LLNFL P F S F+ F N L + VE L ++ P +LRR+K D +++P
Sbjct: 361 ELWALLNFLLPDVFNSADDFDSWFDTKNCLGDQKLVERLHAVLKPFLLRRIKTDVEKSLP 420
Query: 991 PKTERMVPVELSSIQAEY-YRAMLTKNYQILRNIGKGVAQQSMLNIVMQLRKVCNHPYLI 1049
PK E V + LS +Q E+ Y +L K+ +L + GK + + +LNI+MQLRK CNHPYL
Sbjct: 421 PKKEIKVYLGLSKMQREWWYTKILMKDIDVLNSAGK-MDKMRLLNILMQLRKCCNHPYLF 479
Query: 1050 PGTEPDSGSVEFLHEMRIKASAKLTLLHSMLKVLYKEGHRVLIFSQMTKLLDILEDYLNI 1109
G EP G E + S K+ +L +L L ++G RVLIFSQMT+LLDILEDY
Sbjct: 480 DGAEP--GPPYTTDEHIVSNSGKMVVLDKLLAKLKEQGSRVLIFSQMTRLLDILEDYCMW 537
Query: 1110 EFGPKTYERVDGSVSVGDRQA--AITRFNQ-DKSRFVFLLSTRSCGLGINLATADTVIIY 1166
G + Y R+DG +R+ AI FN + S+F+F+LSTR+ GLGINLA+AD VI+Y
Sbjct: 538 R-GYE-YCRLDGQTPHEEREKKEAIEAFNAPNSSKFIFMLSTRAGGLGINLASADVVILY 595
Query: 1167 DSDFNPHADIQAMNRAHRIGQSKRLLVYRLVVRASVEERILQLAKKKLMLDQLFVNK 1223
DSD+NP D+QAM+RAHRIGQ K + V+RL+ +VEERI++ A+ KL LD + + +
Sbjct: 596 DSDWNPQVDLQAMDRAHRIGQKKPVRVFRLITDNTVEERIVERAEIKLRLDSIVIQQ 652
Score = 38 (18.4 bits), Expect = 1.3e-89, Sum P(2) = 1.3e-89
Identities = 9/31 (29%), Positives = 13/31 (41%)
Query: 29 PGLSNGKEENLVTSESPRNTPSAKRRLKNEI 59
PG S KEE + + + K K E+
Sbjct: 29 PGPSTSKEEGAAAAATEATVATEKGEKKKEM 59
>UNIPROTKB|F1N166 [details] [associations]
symbol:SMARCA1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0036310 "annealing helicase
activity" evidence=IEA] [GO:0030182 "neuron differentiation"
evidence=IEA] [GO:0016589 "NURF complex" evidence=IEA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IEA] [GO:0007420 "brain
development" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=IEA] [GO:0031491 "nucleosome binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 GO:GO:0005524 GO:GO:0045893
GO:GO:0007420 GO:GO:0030182 GO:GO:0003677 GO:GO:0006351
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0031491 GO:GO:0043044 GO:GO:0016589
GO:GO:0008094 GeneTree:ENSGT00680000100002 SUPFAM:SSF101224
OMA:PMSQKRK EMBL:DAAA02067438 EMBL:DAAA02067437 IPI:IPI01018574
Ensembl:ENSBTAT00000002973 Uniprot:F1N166
Length = 1078
Score = 867 (310.3 bits), Expect = 2.3e-89, Sum P(2) = 2.3e-89
Identities = 215/547 (39%), Positives = 301/547 (55%)
Query: 696 KLDEPALEKYSHLTDLFVQFERQTLKKDASEDELPRGKGDCQQSEIVALTEQPEELKGGA 755
KL P ++K + + V R + + EDE + + V P +KGG
Sbjct: 127 KLGRPRIKKDDKQSLISVGDYRHR-RTEQEEDEELLSESRKTSNVCVRFEVSPSYVKGGP 185
Query: 756 LFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLS 815
L +Q+ LNWL + N ILADEMGLGKT+ A + L P +VLVP S
Sbjct: 186 LRDYQIRGLNWLISLYENGVNGILADEMGLGKTLQTIALLGYLKHYRNIPGPHMVLVPKS 245
Query: 816 TMPNWLAEFALWAPNLNVVEYHGCAKARAIIRQYEWHASDPDNLNKKTSSYKFNVLLTTY 875
T+ NW+ EF W P+L V+ + G ARA + E + D V +T+Y
Sbjct: 246 TLHNWMNEFKRWVPSLRVICFVGDKDARAAFIRDEMMPGEWD------------VCVTSY 293
Query: 876 EMILADSSHLRGVPWEVLVVDEGHRXXXXXXXXXXXXXXXXXQHRVLLTGTPLQNNIGEM 935
EM++ + S + W LV+DE HR +R+LLTGTPLQNN+ E+
Sbjct: 294 EMVIKEKSVFKKFHWRYLVIDEAHRIKNEKSKLSEIVRDFKSTNRLLLTGTPLQNNLHEL 353
Query: 936 YNLLNFLQPASFPSLSSFEEKF---NDLTTTQKVEELKKLVAPHMLRRLKKDAMQNIPPK 992
+ LLNFL P F S F+ F N L + VE L ++ P +LRR+K D +++PPK
Sbjct: 354 WALLNFLLPDVFNSAEDFDSWFDTKNCLGDQKLVERLHTVLKPFLLRRIKTDVEKSLPPK 413
Query: 993 TERMVPVELSSIQAEYYRAMLTKNYQILRNIGKGVAQQSMLNIVMQLRKVCNHPYLIPGT 1052
E + + LS +Q E+Y +L K+ +L + GK + + +LNI+MQLRK CNHPYL G
Sbjct: 414 KEIKIYLGLSKMQREWYTKILMKDIDVLNSAGK-MDKMRLLNILMQLRKCCNHPYLFDGA 472
Query: 1053 EPDSGSVEFLHEMRIKASAKLTLLHSMLKVLYKEGHRVLIFSQMTKLLDILEDYL---NI 1109
EP G E + S K+ +L +L L ++G RVLIFSQMT+LLDILEDY
Sbjct: 473 EP--GPPYTTDEHIVSNSGKMVVLDKLLAKLKEQGSRVLIFSQMTRLLDILEDYCMWRGY 530
Query: 1110 EF----GPKTYER-----VDGSVSVGDRQA---AITRFN-QDKSRFVFLLSTRSCGLGIN 1156
E+ G +E D + + Q AI FN + S+F+F+LSTR+ GLGIN
Sbjct: 531 EYCRLDGQTPHEEREEILKDFKIIFHEYQGSNEAIEAFNIPNSSKFIFMLSTRAGGLGIN 590
Query: 1157 LATADTVIIYDSDFNPHADIQAMNRAHRIGQSKRLLVYRLVVRASVEERILQLAKKKLML 1216
LA+AD VI+YDSD+NP D+QAM+RAHRIGQ K + V+RL+ +VEERI++ A+ KL L
Sbjct: 591 LASADVVILYDSDWNPQVDLQAMDRAHRIGQKKPVRVFRLITDNTVEERIVERAEIKLRL 650
Query: 1217 DQLFVNK 1223
D + + +
Sbjct: 651 DSIVIQQ 657
Score = 266 (98.7 bits), Expect = 4.7e-19, Sum P(2) = 4.7e-19
Identities = 61/156 (39%), Positives = 97/156 (62%)
Query: 1131 AITRFN-QDKSRFVFLLSTRSCGLGINLATADTVIIYDSDFNPHADIQAMNRAHRIGQSK 1189
AI FN + S+F+F+LSTR+ GLGINLA+AD VI+YDSD+NP D+QAM+RAHRIGQ K
Sbjct: 564 AIEAFNIPNSSKFIFMLSTRAGGLGINLASADVVILYDSDWNPQVDLQAMDRAHRIGQKK 623
Query: 1190 RLLVYRLVVRASVEERILQLAKKKLMLDQLFVNKSG---------SQKEVEDILRWGTEE 1240
+ V+RL+ +VEERI++ A+ KL LD + + + +++E+ ++R G
Sbjct: 624 PVRVFRLITDNTVEERIVERAEIKLRLDSIVIQQGRLIDQQSNKMAKEEMLQMIRHGATH 683
Query: 1241 LFNDSPG-INGKDMGENNTSIEEAVRDLEQKHRKRG 1275
+F + +D+ E+ ++ ++ +K G
Sbjct: 684 VFASKESELTDEDITTLLERGEKKTAEMNERLQKMG 719
Score = 58 (25.5 bits), Expect = 2.3e-89, Sum P(2) = 2.3e-89
Identities = 25/115 (21%), Positives = 46/115 (40%)
Query: 263 VPVEKHEKSSTNGSSGIKFVLAIGASERDRKRKPEVKDE-DSQKKLRVDXXXXXXXXXXX 321
V EK EK S + LA+ AS+ +++ PE +++ + + R +
Sbjct: 51 VATEKGEKKKEKNVSPFQLKLAVKASKSEKEMDPEYEEKMKADRAKRFEFLLKQTELFAH 110
Query: 322 XXXXIGTLSPGTSKLHEK---QRTNNDEVSASLCEVDVGTKGLDAQRKDELAEET 373
SP TS L+ K R D+ + + D + + + +EL E+
Sbjct: 111 FIQPSAQKSP-TSPLNMKLGRPRIKKDDKQSLISVGDYRHRRTEQEEDEELLSES 164
>FB|FBgn0011604 [details] [associations]
symbol:Iswi "Imitation SWI" species:7227 "Drosophila
melanogaster" [GO:0006338 "chromatin remodeling"
evidence=ISS;NAS;TAS] [GO:0016589 "NURF complex"
evidence=NAS;IDA;TAS] [GO:0005524 "ATP binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=IDA] [GO:0008094 "DNA-dependent
ATPase activity" evidence=IGI;IDA] [GO:0000166 "nucleotide binding"
evidence=TAS] [GO:0016584 "nucleosome positioning" evidence=IDA]
[GO:0006334 "nucleosome assembly" evidence=IDA] [GO:0016590 "ACF
complex" evidence=NAS;IDA;TAS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IMP;IDA] [GO:0008623 "CHRAC"
evidence=NAS;IDA;TAS] [GO:0006333 "chromatin assembly or
disassembly" evidence=IDA;TAS] [GO:0042766 "nucleosome
mobilization" evidence=IDA;TAS] [GO:0016887 "ATPase activity"
evidence=NAS] [GO:0035060 "brahma complex" evidence=IDA]
[GO:0003678 "DNA helicase activity" evidence=TAS] [GO:0005515
"protein binding" evidence=IPI] [GO:0006351 "transcription,
DNA-dependent" evidence=IDA] [GO:0005667 "transcription factor
complex" evidence=IPI] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=TAS] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0031491 "nucleosome binding" evidence=IEA]
[GO:0008134 "transcription factor binding" evidence=IPI]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IMP] [GO:0035076 "ecdysone
receptor-mediated signaling pathway" evidence=IGI] [GO:0007517
"muscle organ development" evidence=IMP] [GO:0048813 "dendrite
morphogenesis" evidence=IMP] [GO:0042752 "regulation of circadian
rhythm" evidence=IMP] [GO:0006325 "chromatin organization"
evidence=IMP] [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=IMP] [GO:0031213 "RSF complex"
evidence=IPI] [GO:0005700 "polytene chromosome" evidence=IDA]
[GO:0070615 "nucleosome-dependent ATPase activity" evidence=IDA]
[GO:0035063 "nuclear speck organization" evidence=IMP]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF09110
Pfam:PF09111 Pfam:PF13892 PROSITE:PS00690 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 EMBL:AE013599 GO:GO:0005524
GO:GO:0045892 GO:GO:0003677 GO:GO:0045944 GO:GO:0006351
GO:GO:0042752 Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0005667
GO:GO:0048813 GO:GO:0007517 InterPro:IPR017884 PROSITE:PS51293
GO:GO:0005700 GO:GO:0035076 GO:GO:0042766 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0003678
GO:GO:0031491 GO:GO:0043044 GO:GO:0016584 GO:GO:0006334
GO:GO:0016589 GO:GO:0016590 GO:GO:0008623 GO:GO:0008094
ChiTaRS:SMARCA1 GeneTree:ENSGT00680000100002 KO:K11654
SUPFAM:SSF101224 EMBL:L27127 EMBL:AY094908 EMBL:BT044562 PIR:A56533
RefSeq:NP_523719.1 RefSeq:NP_725203.1 RefSeq:NP_725204.1
UniGene:Dm.2581 PDB:1OFC PDBsum:1OFC ProteinModelPortal:Q24368
SMR:Q24368 DIP:DIP-24067N IntAct:Q24368 MINT:MINT-252539
STRING:Q24368 PaxDb:Q24368 PRIDE:Q24368 EnsemblMetazoa:FBtr0087841
EnsemblMetazoa:FBtr0087842 EnsemblMetazoa:FBtr0087843 GeneID:36390
KEGG:dme:Dmel_CG8625 CTD:36390 FlyBase:FBgn0011604
InParanoid:Q24368 OMA:EDYCHWR OrthoDB:EOG4M0CGK PhylomeDB:Q24368
EvolutionaryTrace:Q24368 GenomeRNAi:36390 NextBio:798287
Bgee:Q24368 GermOnline:CG8625 GO:GO:0031213 GO:GO:0070615
GO:GO:0035063 Uniprot:Q24368
Length = 1027
Score = 879 (314.5 bits), Expect = 6.6e-89, Sum P(2) = 6.6e-89
Identities = 218/568 (38%), Positives = 315/568 (55%)
Query: 721 KKDASEDELPRGKGDCQQSEIVALTEQPEELKGGALFPHQLEALNWLRKCWHKSKNVILA 780
K + EDE + D EI P +K G + +Q+ LNW+ + N ILA
Sbjct: 94 KTEQEEDEELLAE-DSATKEIFRFDASPAYIKSGEMRDYQIRGLNWMISLYENGINGILA 152
Query: 781 DEMGLGKTVSACAFISSLYCEFKAKL-PCLVLVPLSTMPNWLAEFALWAPNLNVVEYHGC 839
DEMGLGKT+ + + L FK + P +V+VP ST+ NW+ EF W P+L V G
Sbjct: 153 DEMGLGKTLQTISLLGYLK-HFKNQAGPHIVIVPKSTLQNWVNEFKKWCPSLRAVCLIGD 211
Query: 840 AKAR-AIIRQYEWHASDPDNLNKKTSSYKFNVLLTTYEMILADSSHLRGVPWEVLVVDEG 898
R IR D L +++V +T+YEM + + S + W LV+DE
Sbjct: 212 QDTRNTFIR---------DVLMPG----EWDVCVTSYEMCIREKSVFKKFNWRYLVIDEA 258
Query: 899 HRXXXXXXXXXXXXXXXXXQHRVLLTGTPLQNNIGEMYNLLNFLQPASFPSLSSFEEKFN 958
HR +R+L+TGTPLQNN+ E++ LLNFL P F S F+E FN
Sbjct: 259 HRIKNEKSKLSEILREFKTANRLLITGTPLQNNLHELWALLNFLLPDVFNSSEDFDEWFN 318
Query: 959 DLTTTQK---VEELKKLVAPHMLRRLKKDAMQNIPPKTERMVPVELSSIQAEYYRAMLTK 1015
T + L ++ P +LRRLK + + + PK E + V LS +Q ++Y +L K
Sbjct: 319 TNTCLGDDALITRLHAVLKPFLLRRLKAEVEKRLKPKKEMKIFVGLSKMQRDWYTKVLLK 378
Query: 1016 NYQILRNIGKGVAQQSMLNIVMQLRKVCNHPYLIPGTEPDSGSVEFLHEMRIKASAKLTL 1075
+ ++ GK V + + NI+MQLRK NHPYL G EP H + S K+ +
Sbjct: 379 DIDVVNGAGK-VEKMRLQNILMQLRKCTNHPYLFDGAEPGPPYTTDTH--LVYNSGKMAI 435
Query: 1076 LHSMLKVLYKEGHRVLIFSQMTKLLDILEDYLNIEFGPKTYERVDGSVSVGDRQAAITRF 1135
L +L L ++G RVLIFSQMT++LDILEDY + + Y R+DG DR I F
Sbjct: 436 LDKLLPKLQEQGSRVLIFSQMTRMLDILEDYCH--WRNYNYCRLDGQTPHEDRNRQIQEF 493
Query: 1136 NQDKS-RFVFLLSTRSCGLGINLATADTVIIYDSDFNPHADIQAMNRAHRIGQSKRLLVY 1194
N D S +F+F+LSTR+ GLGINLATAD VIIYDSD+NP D+QAM+RAHRIGQ K++ V+
Sbjct: 494 NMDNSAKFLFMLSTRAGGLGINLATADVVIIYDSDWNPQMDLQAMDRAHRIGQKKQVRVF 553
Query: 1195 RLVVRASVEERILQLAKKKLMLDQLFV-------NKSG--SQKEVEDILRWGTEELFNDS 1245
RL+ ++VEE+I++ A+ KL LD++ + N+S ++ E+ +I+R+G ++F+
Sbjct: 554 RLITESTVEEKIVERAEVKLRLDKMVIQGGRLVDNRSNQLNKDEMLNIIRFGANQVFSSK 613
Query: 1246 P-GINGKDM------GENNTSIEEAVRD 1266
I +D+ GE T+ ++A D
Sbjct: 614 ETDITDEDIDVILERGEAKTAEQKAALD 641
Score = 41 (19.5 bits), Expect = 6.6e-89, Sum P(2) = 6.6e-89
Identities = 18/65 (27%), Positives = 31/65 (47%)
Query: 1228 KEVEDILRWG----TEELFNDSPGINGKDMGENNTSIEEAVRDLEQKHRKRGGGLGDVYQ 1283
+E E++L G T+ FN N K G ++ I+ +D+E K + V+
Sbjct: 787 QEKENLLSQGFTAWTKRDFNQFIKANEK-YGRDD--IDNIAKDVEGKTPEEVIEYNAVFW 843
Query: 1284 DKCTE 1288
++CTE
Sbjct: 844 ERCTE 848
>WB|WBGene00002169 [details] [associations]
symbol:isw-1 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0031491 "nucleosome binding" evidence=IEA]
[GO:0043044 "ATP-dependent chromatin remodeling" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006338 "chromatin
remodeling" evidence=IEA] [GO:0016818 "hydrolase activity, acting
on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0000003 "reproduction" evidence=IMP] [GO:0040010
"positive regulation of growth rate" evidence=IMP] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0002009 "morphogenesis of an epithelium" evidence=IMP]
[GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
[GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0040027 "negative regulation of
vulval development" evidence=IMP] [GO:0016246 "RNA interference"
evidence=IMP] [GO:0008340 "determination of adult lifespan"
evidence=IMP] [GO:0000790 "nuclear chromatin" evidence=IDA]
[GO:0040026 "positive regulation of vulval development"
evidence=IGI] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 InterPro:IPR017956 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 PROSITE:PS00690 PROSITE:PS51194
SMART:SM00384 SMART:SM00490 SMART:SM00717 GO:GO:0005524
GO:GO:0008340 GO:GO:0009792 GO:GO:0002009 GO:GO:0040007
GO:GO:0040010 GO:GO:0002119 GO:GO:0016246 GO:GO:0006355
GO:GO:0003677 GO:GO:0006351 Gene3D:1.10.10.60 SUPFAM:SSF46689
GO:GO:0000790 GO:GO:0040035 InterPro:IPR017884 PROSITE:PS51293
GO:GO:0004386 GO:GO:0040027 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0016585 GO:GO:0031491
GO:GO:0043044 GO:GO:0040026 EMBL:FO081312 PIR:S44645
RefSeq:NP_498468.2 ProteinModelPortal:P41877 SMR:P41877
STRING:P41877 PaxDb:P41877 EnsemblMetazoa:F37A4.8 GeneID:175944
KEGG:cel:CELE_F37A4.8 UCSC:F37A4.8 CTD:175944 WormBase:F37A4.8
GeneTree:ENSGT00680000100002 HOGENOM:HOG000192862 InParanoid:P41877
KO:K11654 OMA:MQRKWYK NextBio:890418 SUPFAM:SSF101224
Uniprot:P41877
Length = 1009
Score = 893 (319.4 bits), Expect = 7.6e-89, P = 7.6e-89
Identities = 220/571 (38%), Positives = 322/571 (56%)
Query: 721 KKDASEDELPRGKGDCQQSE-IVALTEQPEELKGGALFPHQLEALNWLRKCWHKSKNVIL 779
K + EDE D +S+ +V + P ++ G + +Q+ LNWL H N IL
Sbjct: 98 KTEQEEDE--EMVADAIKSDDLVIFDKSPFYIENGEMRDYQVRGLNWLASLQHNKINGIL 155
Query: 780 ADEMGLGKTVSACAFISSLYCEFKAKL-PCLVLVPLSTMPNWLAEFALWAPNLNVVEYHG 838
ADEMGLGKT+ + I + +K K P LV+VP ST+ NW EF W P++N V G
Sbjct: 156 ADEMGLGKTLQTISMIGYMK-HYKNKASPHLVIVPKSTLQNWANEFKKWCPSINAVVLIG 214
Query: 839 CAKARAIIRQYEWHASDPDNLNKKTSSYKFNVLLTTYEMILADSSHLRGVPWEVLVVDEG 898
AR + L KF+V TTYEM+L + L+ + W +++DE
Sbjct: 215 DEAARNQV------------LRDVILPQKFDVCCTTYEMMLKVKTQLKKLNWRYIIIDEA 262
Query: 899 HRXXXXXXXXXXXXXXXXXQHRVLLTGTPLQNNIGEMYNLLNFLQPASFPSLSSFEEKF- 957
HR ++R+L+TGTPLQNN+ E++ LLNFL P F S F+ F
Sbjct: 263 HRIKNEKSKLSETVRELNSENRLLITGTPLQNNLHELWALLNFLLPDIFTSSDDFDSWFS 322
Query: 958 NDLTT--TQKVEELKKLVAPHMLRRLKKDAMQNIPPKTERMVPVELSSIQAEYYRAMLTK 1015
ND + T V+ L K++ P +LRR+K D +++ PK E V V LS +Q E+Y +L K
Sbjct: 323 NDAMSGNTDLVQRLHKVLQPFLLRRIKSDVEKSLLPKKEVKVYVGLSKMQREWYTKVLMK 382
Query: 1016 NYQILRNIGKGVAQQSMLNIVMQLRKVCNHPYLIPGTEPDSGSVEFLHEMRIKASAKLTL 1075
+ I+ GK V + ++NI+M LRK NHPYL G EP H + S K+ +
Sbjct: 383 DIDIINGAGK-VEKARLMNILMHLRKCVNHPYLFDGAEPGPPFTTDQH--LVDNSGKMVV 439
Query: 1076 LHSMLKVLYKEGHRVLIFSQMTKLLDILEDYLNIEFGPKTYERVDGSVSVGDRQAAITRF 1135
L +L ++G RVLIFSQ +++LD+LED+ + Y R+DGS DR AI +
Sbjct: 440 LDKLLMKFKEQGSRVLIFSQFSRMLDLLEDFC--WWRHYEYCRLDGSTPHEDRSNAIEAY 497
Query: 1136 NQ-DKSRFVFLLSTRSCGLGINLATADTVIIYDSDFNPHADIQAMNRAHRIGQSKRLLVY 1194
N D +F+F+L+TR+ GLGINLATAD VIIYDSD+NP +D+QAM+RAHRIGQ K++ V+
Sbjct: 498 NAPDSKKFIFMLTTRAGGLGINLATADVVIIYDSDWNPQSDLQAMDRAHRIGQKKQVRVF 557
Query: 1195 RLVVRASVEERILQLAKKKLMLDQLFVNK---SGSQK-----EVEDILRWGTEELF--ND 1244
RL+ +V+ERI++ A+ KL LD + + + S +QK ++ ++R G E++F D
Sbjct: 558 RLITENTVDERIIEKAEAKLRLDNIVIQQGRMSEAQKTLGKGDMISMIRHGAEQVFAAKD 617
Query: 1245 SPGINGKDMGENNTSIEEAVRDLEQKHRKRG 1275
S I+ D+ +T +E+A + + K G
Sbjct: 618 ST-ISDDDI---DTILEKAEVKTAELNEKMG 644
>ZFIN|ZDB-GENE-070705-296 [details] [associations]
symbol:si:dkey-148b12.1 "si:dkey-148b12.1"
species:7955 "Danio rerio" [GO:0016817 "hydrolase activity, acting
on acid anhydrides" evidence=IEA] [GO:0043044 "ATP-dependent
chromatin remodeling" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0016818 "hydrolase
activity, acting on acid anhydrides, in phosphorus-containing
anhydrides" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0031491
"nucleosome binding" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0006338 "chromatin remodeling" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF09110
Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194 SMART:SM00490
SMART:SM00717 ZFIN:ZDB-GENE-070705-296 GO:GO:0005524 GO:GO:0003677
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0016585 GO:GO:0031491
GO:GO:0043044 GeneTree:ENSGT00680000100002 HOGENOM:HOG000192862
SUPFAM:SSF101224 HOVERGEN:HBG056329 KO:K11727 OrthoDB:EOG44J2H9
EMBL:CR848717 EMBL:CU104724 IPI:IPI00488326 RefSeq:NP_001093467.1
UniGene:Dr.81160 SMR:A5WUY4 Ensembl:ENSDART00000020725
GeneID:559803 KEGG:dre:559803 OMA:IGHAWIN NextBio:20883144
Uniprot:A5WUY4
Length = 1036
Score = 893 (319.4 bits), Expect = 7.6e-89, P = 7.6e-89
Identities = 230/613 (37%), Positives = 331/613 (53%)
Query: 696 KLDEPALEKYSHLTDLFVQFERQTLKKDASEDELPRGKGDCQQSEIVALTEQPEELKGGA 755
K+ P + K +L + + + + EDE + + +V E P +K G
Sbjct: 84 KMGRPRI-KQDEKQNLLSVGDNRHRRTEQEEDEELLSESRKADNVLVRFEESPSYIKNGT 142
Query: 756 LFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLS 815
L +Q+ LNW+ + N ILADEMGLGKT+ A + L P +VLVP S
Sbjct: 143 LRDYQIRGLNWMISLYENGINGILADEMGLGKTLQTIALLGYLKHYRNIPGPHMVLVPKS 202
Query: 816 TMPNWLAEFALWAPNLNVVEYHGCAKARA-IIRQYEWHASDPDNLNKKTSSYKFNVLLTT 874
T+ NW+ EF W P L V G RA IR P +++V +T+
Sbjct: 203 TLHNWMNEFKRWVPTLKAVCLIGNKDERAAFIRDVMM----PG---------EWDVCVTS 249
Query: 875 YEMILADSSHLRGVPWEVLVVDEGHRXXXXXXXXXXXXXXXXXQHRVLLTGTPLQNNIGE 934
YEM++ + S + W LV+DE HR +R+LLTGTPLQNN+ E
Sbjct: 250 YEMVIREKSVFKKFNWRYLVIDEAHRIKNEKSKLSEIAREFKTTNRLLLTGTPLQNNLHE 309
Query: 935 MYNLLNFLQPASFPSLSSFEEKF--NDLTTTQKVEELKKLVAPHMLRRLKKDAMQNIPPK 992
+++LLNFL P F S S F+ F N L + VE L ++ P +LRR+K + +++PPK
Sbjct: 310 LWSLLNFLLPDVFNSASDFDSWFDTNCLGDQKLVERLHAVLRPFLLRRIKAEVEKSLPPK 369
Query: 993 TERMVPVELSSIQAEYYRAMLTKNYQILRNIGKGVAQQSMLNIVMQLRKVCNHPYLIPGT 1052
E + + LS +Q E+Y +L K+ IL + GK + + +LNI+MQLRK CNHPYL G
Sbjct: 370 KEVKIYLGLSKMQREWYTRILMKDIDILNSAGK-MDKMRLLNILMQLRKCCNHPYLFDGA 428
Query: 1053 EPDSGSVEFLHEMRIKASAKLTLLHSMLKVLYKEGHRVLIFSQMTKLLDILEDYLNIEFG 1112
EP H + S K+ L +L + ++G RVLIFSQMT++LDILEDY G
Sbjct: 429 EPGPPYTTDTH--LVINSGKMVALDKLLPKVQEQGSRVLIFSQMTRVLDILEDYCMWR-G 485
Query: 1113 PKTYERVDGSVSVGDRQAAITRFNQ-DKSRFVFLLSTRSCGLGINLATADTVIIYDSDFN 1171
+ Y R+DG+ R+ AI FN + S+F+F+LSTR+ GLGINLATAD VI+YDSD+N
Sbjct: 486 FE-YCRLDGNTPHEAREQAIDAFNAPNSSKFIFMLSTRAGGLGINLATADVVILYDSDWN 544
Query: 1172 PHADIQAMNRAHRIGQSKRLLVYRLVVRASVEERILQLAKKKLMLDQLFV---------N 1222
P D+QAM+RAHRIGQ K + V+RL+ +VEERI++ A+ KL LD + + N
Sbjct: 545 PQVDLQAMDRAHRIGQRKPVKVFRLITDNTVEERIVERAEMKLRLDSIVIQQGRLIDQQN 604
Query: 1223 KSGSQKEVEDILRWGTEELF--NDSPGINGKDMGENNTSIEE-AVRDLEQKHRKRGGGLG 1279
K G E+ ++R G +F DS + +D+ +T +E A + E R + G
Sbjct: 605 KLGKD-EMLQMIRHGATHVFASKDSE-LTDEDI---DTILERGAKKTAEMNERMQNLGES 659
Query: 1280 DVYQDKCTEGSTK 1292
+ G+T+
Sbjct: 660 SLRNFTVDTGATE 672
>RGD|1561046 [details] [associations]
symbol:Smarca1 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily a, member 1"
species:10116 "Rattus norvegicus" [GO:0000733 "DNA strand
renaturation" evidence=ISO] [GO:0000790 "nuclear chromatin"
evidence=ISO] [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0006338
"chromatin remodeling" evidence=ISO] [GO:0006351 "transcription,
DNA-dependent" evidence=ISO] [GO:0007420 "brain development"
evidence=ISO] [GO:0016589 "NURF complex" evidence=ISO] [GO:0030182
"neuron differentiation" evidence=ISO] [GO:0031491 "nucleosome
binding" evidence=IEA] [GO:0036310 "annealing helicase activity"
evidence=ISO] [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=IEA;ISO] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=ISO] [GO:0090537 "CERF
complex" evidence=ISO] [GO:2000177 "regulation of neural precursor
cell proliferation" evidence=ISO] [GO:0008094 "DNA-dependent ATPase
activity" evidence=ISO] [GO:0070615 "nucleosome-dependent ATPase
activity" evidence=ISO] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 RGD:1561046 GO:GO:0005524 GO:GO:0003677
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0016585 GO:GO:0031491 GO:GO:0043044
GeneTree:ENSGT00680000100002 SUPFAM:SSF101224 IPI:IPI00947680
PRIDE:D3ZIE5 Ensembl:ENSRNOT00000068478 UCSC:RGD:1561046
ArrayExpress:D3ZIE5 Uniprot:D3ZIE5
Length = 1034
Score = 868 (310.6 bits), Expect = 1.6e-88, Sum P(2) = 1.6e-88
Identities = 216/546 (39%), Positives = 302/546 (55%)
Query: 696 KLDEPALEKYSHLTDLFVQFERQTLKKDASEDELPRGKGDCQQSEIVALTEQPEELKGGA 755
KL P ++K + + V R + + EDE + + V P +KGG
Sbjct: 104 KLARPRVKKDDKQSLISVGDYRHR-RTEQEEDEELLSESRKTSNVCVRFEVSPSYVKGGP 162
Query: 756 LFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSL--YCEFKAKLPCLVLVP 813
L +Q+ LNWL + N ILADEMGLGKT+ A + L Y F P +VLVP
Sbjct: 163 LRDYQIRGLNWLISLYENGVNGILADEMGLGKTLQTIALLGYLKHYRNFPG--PHMVLVP 220
Query: 814 LSTMPNWLAEFALWAPNLNVVEYHGCAKARAIIRQYEWHASDPDNLNKKTSSYKFNVLLT 873
ST+ NW+ EF W P+L V+ + G RA + E + D V +T
Sbjct: 221 KSTLHNWMNEFKRWVPSLRVICFVGDKDVRAAFIRDEMMPGEWD------------VCVT 268
Query: 874 TYEMILADSSHLRGVPWEVLVVDEGHRXXXXXXXXXXXXXXXXXQHRVLLTGTPLQNNIG 933
+YEM++ + S + W LV+DE HR +R+LLTGTPLQNN+
Sbjct: 269 SYEMVIKEKSVFKKFHWRYLVIDEAHRIKNEKSKLSEIVREFKSTNRLLLTGTPLQNNLH 328
Query: 934 EMYNLLNFLQPASFPSLSSFEEKF---NDLTTTQKVEELKKLVAPHMLRRLKKDAMQNIP 990
E++ LLNFL P F S F+ F N L + VE L ++ P +LRR+K D +++P
Sbjct: 329 ELWALLNFLLPDVFNSADDFDSWFDTKNCLGDQKLVERLHAVLKPFLLRRIKTDVEKSLP 388
Query: 991 PKTERMVPVELSSIQAEYYRAMLTKNYQILRNIGKGVAQQSMLNIVMQLRKVCNHPYLIP 1050
PK E + + LS +Q E+Y +L K+ +L + GK + + +LNI+MQLRK CNHPYL
Sbjct: 389 PKKEIKIYLGLSKMQREWYTKILMKDIDVLNSSGK-MDKMRLLNILMQLRKCCNHPYLFD 447
Query: 1051 GTEPDSGSVEFLHEMRIKASAKLTLLHSMLKVLYKEGHRVLIFSQMTKLLDILEDYLNIE 1110
G EP G E + S K+ L +L + ++G RVLIFSQMT+LLDILEDY
Sbjct: 448 GAEP--GPPYTTDEHIVSNSGKMVALDKLLARIKEQGSRVLIFSQMTRLLDILEDYCMWR 505
Query: 1111 FGPKTYERVDGSVSVGDRQ------------AAITRFNQ-DKSRFVFLLSTRSCGLGINL 1157
G + Y R+DG +R+ AI FN + S+F+F+LSTR+ GLGINL
Sbjct: 506 -GYE-YCRLDGQTPHEERENLFLHKHNLFSTEAIEAFNAPNSSKFIFMLSTRAGGLGINL 563
Query: 1158 ATADTVIIYDSDFNPHADIQAMNRAHRIGQSKRLLVYRLVVRASVEERILQLAKKKLMLD 1217
A+AD VI+YDSD+NP D+QAM+RAHRIGQ K + V+RL+ +VEERI++ A+ KL LD
Sbjct: 564 ASADVVILYDSDWNPQVDLQAMDRAHRIGQKKPVRVFRLITDNTVEERIVERAEIKLRLD 623
Query: 1218 QLFVNK 1223
+ + +
Sbjct: 624 SIVIQQ 629
Score = 49 (22.3 bits), Expect = 1.6e-88, Sum P(2) = 1.6e-88
Identities = 28/139 (20%), Positives = 51/139 (36%)
Query: 239 DTKFHPAEEVLPHSQVTKSEQNDEVPVEKHEKSSTNGSSGIKFVLAIGASERDRKRKPEV 298
DT A ++ T DE P K S +S + LA S+ +++ PE
Sbjct: 4 DTATEAATVAASDARATIVVLEDEQPGPKTNFKSVKITSPFQLKLAAKTSKSEKEMDPEY 63
Query: 299 KDE-DSQKKLRVDXXXXXXXXXXXXXXXIGTLSPGTSKLHEK---QRTNNDEVSASLCEV 354
+++ + + R + SP TS L+ K R D+ + +
Sbjct: 64 EEKMKADRAKRFEFLLKQTELFAHFIQPSAQKSP-TSPLNMKLARPRVKKDDKQSLISVG 122
Query: 355 DVGTKGLDAQRKDELAEET 373
D + + + +EL E+
Sbjct: 123 DYRHRRTEQEEDEELLSES 141
>ZFIN|ZDB-GENE-021125-1 [details] [associations]
symbol:smarca5 "SWI/SNF related, matrix associated,
actin dependent regulator of chromatin, subfamily a, member 5"
species:7955 "Danio rerio" [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0016818 "hydrolase activity, acting on
acid anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0031491 "nucleosome binding"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0006338 "chromatin remodeling" evidence=IEA] [GO:0060041
"retina development in camera-type eye" evidence=IMP]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 ZFIN:ZDB-GENE-021125-1 GO:GO:0005524
GO:GO:0003677 Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0060041
InterPro:IPR017884 PROSITE:PS51293 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0016585 GO:GO:0031491
GO:GO:0043044 GeneTree:ENSGT00680000100002 HOGENOM:HOG000192862
SUPFAM:SSF101224 OMA:EDYCHWR HOVERGEN:HBG056329 EMBL:CU550733
IPI:IPI00619566 UniGene:Dr.76168 Ensembl:ENSDART00000123972
ArrayExpress:B8A552 Bgee:B8A552 Uniprot:B8A552
Length = 1035
Score = 890 (318.4 bits), Expect = 1.6e-88, P = 1.6e-88
Identities = 231/613 (37%), Positives = 331/613 (53%)
Query: 696 KLDEPALEKYSHLTDLFVQFERQTLKKDASEDELPRGKGDCQQSEIVALTEQPEELKGGA 755
K P ++K +L + + + + EDE + S + P +K G
Sbjct: 104 KPGRPRIKK-DEKQNLLSAGDNRHRRTEQEEDEELLSENSKATSVCTRFDDSPSYVKTGK 162
Query: 756 LFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLS 815
L +Q+ LNWL + N ILADEMGLGKT+ + + + P +VLVP S
Sbjct: 163 LRDYQVRGLNWLISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIPGPHMVLVPKS 222
Query: 816 TMPNWLAEFALWAPNLNVVEYHGCAKAR-AIIRQYEWHASDPDNLNKKTSSYKFNVLLTT 874
T+ NW+ EF W P+L V G + R A IR D L +++V +T+
Sbjct: 223 TLYNWMNEFKRWVPSLKAVCLIGDREERTAFIR---------DTLLPG----EWDVCVTS 269
Query: 875 YEMILADSSHLRGVPWEVLVVDEGHRXXXXXXXXXXXXXXXXXQHRVLLTGTPLQNNIGE 934
YEM++ + + + W LV+DE HR +R+LLTGTPLQNN+ E
Sbjct: 270 YEMLIIERAVFKKFNWRYLVIDEAHRIKNEKSKLSEIVREFKTTNRLLLTGTPLQNNLHE 329
Query: 935 MYNLLNFLQPASFPSLSSFEEKF---NDLTTTQKVEELKKLVAPHMLRRLKKDAMQNIPP 991
++ LLNFL P F S F+ F N L T+ VE L ++ P +LRR+K D +++ P
Sbjct: 330 LWALLNFLLPDVFNSSEDFDAWFDTNNCLGDTKLVERLHTVLRPFLLRRIKADVEKSLLP 389
Query: 992 KTERMVPVELSSIQAEYYRAMLTKNYQILRNIGKGVAQQSMLNIVMQLRKVCNHPYLIPG 1051
K E + V LS +Q E+Y +L K+ IL + GK + + +LN++MQLRK CNHPYL G
Sbjct: 390 KKEIKIYVGLSKMQREWYTKILMKDIDILNSAGK-MDKMRLLNVLMQLRKCCNHPYLFDG 448
Query: 1052 TEPDSGSVEFLHEMRIKASAKLTLLHSMLKVLYKEGHRVLIFSQMTKLLDILEDY-LNIE 1110
EP LH + S K+ +L +L L ++G RVLIFSQMT++LDILEDY +
Sbjct: 449 AEPGPPYTTDLH--LVVNSGKMVVLDKLLPKLKEQGSRVLIFSQMTRVLDILEDYCMWRN 506
Query: 1111 FGPKTYERVDGSVSVGDRQAAITRFNQ-DKSRFVFLLSTRSCGLGINLATADTVIIYDSD 1169
+G Y R+DG +RQ +I FN+ + S+F+F+LSTR+ GLGINLATAD VIIYDSD
Sbjct: 507 YG---YCRLDGQTPHEERQISINAFNEPNSSKFLFMLSTRAGGLGINLATADVVIIYDSD 563
Query: 1170 FNPHADIQAMNRAHRIGQSKRLLVYRLVVRASVEERILQLAKKKLMLDQLFV-------- 1221
+NP D+QAM+RAHRIGQ K++ V+R + +VEERI++ A+ KL LD + +
Sbjct: 564 WNPQVDLQAMDRAHRIGQKKQVRVFRFITDNTVEERIVERAEMKLRLDSIVIQQGRLVDP 623
Query: 1222 --NKSGSQKEVEDILRWGTEELFNDSPG-INGKDMGENNTSIEEAVRDLEQKHRKRG-GG 1277
NK G E+ I+R G +F I +D+ E ++++K G G
Sbjct: 624 SMNKLGKD-EMLSIIRHGATHVFASKESEITDEDIDGILERGERKTMEMKEKMANLGEGS 682
Query: 1278 LGDVYQDKCTEGS 1290
L + D TE S
Sbjct: 683 LRNFTMD--TENS 693
>UNIPROTKB|F6TQG2 [details] [associations]
symbol:SMARCA1 "Probable global transcription activator
SNF2L1" species:9606 "Homo sapiens" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0031491 "nucleosome
binding" evidence=IEA] [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF09110
Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194 SMART:SM00490
SMART:SM00717 GO:GO:0005524 GO:GO:0003677 Gene3D:1.10.10.60
SUPFAM:SSF46689 InterPro:IPR017884 PROSITE:PS51293 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0016585
GO:GO:0031491 GO:GO:0043044 ChiTaRS:SMARCA1 SUPFAM:SSF101224
EMBL:AL138745 EMBL:AL022577 HGNC:HGNC:11097 IPI:IPI00647510
ProteinModelPortal:F6TQG2 SMR:F6TQG2 PRIDE:F6TQG2
Ensembl:ENST00000450039 ArrayExpress:F6TQG2 Bgee:F6TQG2
Uniprot:F6TQG2
Length = 1005
Score = 883 (315.9 bits), Expect = 9.6e-88, P = 9.6e-88
Identities = 216/543 (39%), Positives = 303/543 (55%)
Query: 696 KLDEPALEKYSHLTDLFVQFERQTLKKDASEDELPRGKGDCQQSEIVALTEQPEELKGGA 755
KL P ++K L + + + + EDE + + + P +KGG
Sbjct: 103 KLGRPRIKK-DEKQSLISAGDYRHRRTEQEEDEELLSESRKTSNVCIRFEVSPSYVKGGP 161
Query: 756 LFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLS 815
L +Q+ LNWL + N ILADEMGLGKT+ A + L P +VLVP S
Sbjct: 162 LRDYQIRGLNWLISLYENGVNGILADEMGLGKTLQTIALLGYLKHYRNIPGPHMVLVPKS 221
Query: 816 TMPNWLAEFALWAPNLNVVEYHGCAKARAIIRQYEWHASDPDNLNKKTSSYKFNVLLTTY 875
T+ NW+ EF W P+L V+ + G ARA + E + D V +T+Y
Sbjct: 222 TLHNWMNEFKRWVPSLRVICFVGDKDARAAFIRDEMMPGEWD------------VCVTSY 269
Query: 876 EMILADSSHLRGVPWEVLVVDEGHRXXXXXXXXXXXXXXXXXQHRVLLTGTPLQNNIGEM 935
EM++ + S + W LV+DE HR +R+LLTGTPLQNN+ E+
Sbjct: 270 EMVIKEKSVFKKFHWRYLVIDEAHRIKNEKSKLSEIVREFKSTNRLLLTGTPLQNNLHEL 329
Query: 936 YNLLNFLQPASFPSLSSFEEKF---NDLTTTQKVEELKKLVAPHMLRRLKKDAMQNIPPK 992
+ LLNFL P F S F+ F N L + VE L ++ P +LRR+K D +++PPK
Sbjct: 330 WALLNFLLPDVFNSADDFDSWFDTKNCLGDQKLVERLHAVLKPFLLRRIKTDVEKSLPPK 389
Query: 993 TERMVPVELSSIQAEYYRAMLTKNYQILRNIGKGVAQQSMLNIVMQLRKVCNHPYLIPGT 1052
E + + LS +Q E+Y +L K+ +L + GK + + +LNI+MQLRK CNHPYL G
Sbjct: 390 KEIKIYLGLSKMQREWYTKILMKDIDVLNSSGK-MDKMRLLNILMQLRKCCNHPYLFDGA 448
Query: 1053 EPDSGSVEFLHEMRIKASAKLTLLHSMLKVLYKEGHRVLIFSQMTKLLDILEDYL---NI 1109
EP G E + S K+ +L +L L ++G RVLIFSQMT+LLDILEDY
Sbjct: 449 EP--GPPYTTDEHIVSNSGKMVVLDKLLAKLKEQGSRVLIFSQMTRLLDILEDYCMWRGY 506
Query: 1110 EF----GPKTYE-RVDGSVSV---GDRQAAITRFNQ-DKSRFVFLLSTRSCGLGINLATA 1160
E+ G +E R D + V G R+A I FN + S+F+F+LSTR+ GLGINLA+A
Sbjct: 507 EYCRLDGQTPHEEREDKFLEVEFLGQREA-IEAFNAPNSSKFIFMLSTRAGGLGINLASA 565
Query: 1161 DTVIIYDSDFNPHADIQAMNRAHRIGQSKRLLVYRLVVRASVEERILQLAKKKLMLDQLF 1220
D VI+YDSD+NP D+QAM+RAHRIGQ K + V+RL+ +VEERI++ A+ KL LD +
Sbjct: 566 DVVILYDSDWNPQVDLQAMDRAHRIGQKKPVRVFRLITDNTVEERIVERAEIKLRLDSIV 625
Query: 1221 VNK 1223
+ +
Sbjct: 626 IQQ 628
Score = 273 (101.2 bits), Expect = 1.6e-19, P = 1.6e-19
Identities = 68/185 (36%), Positives = 109/185 (58%)
Query: 1105 DYLNIEFGPKTYERVDGSVSV---GDRQAAITRFNQ-DKSRFVFLLSTRSCGLGINLATA 1160
+Y ++ ER D + V G R+A I FN + S+F+F+LSTR+ GLGINLA+A
Sbjct: 507 EYCRLDGQTPHEEREDKFLEVEFLGQREA-IEAFNAPNSSKFIFMLSTRAGGLGINLASA 565
Query: 1161 DTVIIYDSDFNPHADIQAMNRAHRIGQSKRLLVYRLVVRASVEERILQLAKKKLMLDQLF 1220
D VI+YDSD+NP D+QAM+RAHRIGQ K + V+RL+ +VEERI++ A+ KL LD +
Sbjct: 566 DVVILYDSDWNPQVDLQAMDRAHRIGQKKPVRVFRLITDNTVEERIVERAEIKLRLDSIV 625
Query: 1221 VNKSG---------SQKEVEDILRWGTEELFNDSPG-INGKDMGENNTSIEEAVRDLEQK 1270
+ + +++E+ ++R G +F + +D+ E+ ++ ++
Sbjct: 626 IQQGRLIDQQSNKLAKEEMLQMIRHGATHVFASKESELTDEDITTILERGEKKTAEMNER 685
Query: 1271 HRKRG 1275
+K G
Sbjct: 686 LQKMG 690
>POMBASE|SPAC1250.01 [details] [associations]
symbol:snf21 "ATP-dependent DNA helicase Snf21"
species:4896 "Schizosaccharomyces pombe" [GO:0000790 "nuclear
chromatin" evidence=IC] [GO:0000991 "core RNA polymerase II binding
transcription factor activity" evidence=ISO] [GO:0003677 "DNA
binding" evidence=IC] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=IC]
[GO:0005634 "nucleus" evidence=IDA] [GO:0006338 "chromatin
remodeling" evidence=ISO] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=IDA] [GO:0016586 "RSC complex"
evidence=IDA] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 PomBase:SPAC1250.01 GO:GO:0005524 EMBL:CU329670
GenomeReviews:CU329670_GR GO:GO:0003677 GO:GO:0006338 GO:GO:0000790
GO:GO:0004003 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0016586 GO:GO:0000991 Gene3D:1.20.920.10
SUPFAM:SSF47370 PROSITE:PS00633 InterPro:IPR018359
InterPro:IPR013999 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 SMART:SM00573 PROSITE:PS51204 HOGENOM:HOG000172362
KO:K11786 EMBL:AB162438 PIR:T37561 RefSeq:NP_594861.1
ProteinModelPortal:Q9UTN6 DIP:DIP-48388N STRING:Q9UTN6
EnsemblFungi:SPAC1250.01.1 GeneID:2542638 KEGG:spo:SPAC1250.01
OMA:WAPSISA OrthoDB:EOG4D565R NextBio:20803687 Uniprot:Q9UTN6
Length = 1199
Score = 876 (313.4 bits), Expect = 1.4e-87, Sum P(3) = 1.4e-87
Identities = 203/516 (39%), Positives = 293/516 (56%)
Query: 744 LTEQPEELKGGALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFK 803
+TEQP L GG L +QL L W+ ++ N ILADEMGLGKT+ + I+ L + +
Sbjct: 405 VTEQPSILVGGKLKEYQLRGLQWMISLYNNHLNGILADEMGLGKTIQTISLITHLIEKKR 464
Query: 804 AKLPCLVLVPLSTMPNWLAEFALWAPNLNVVEYHGCAKARAIIRQYEWHASDPDNLNKKT 863
P LV+VPLST+ NW EF WAP++ + Y G + R + H++
Sbjct: 465 QNGPFLVIVPLSTLTNWTMEFERWAPSIVKIVYKGPPQVRKALHPQVRHSN--------- 515
Query: 864 SSYKFNVLLTTYEMILADSSHLRGVPWEVLVVDEGHRXXXXXXXXXXXXXXX-XXQHRVL 922
F VLLTTYE I+ D L + W +++DEGHR ++R++
Sbjct: 516 ----FQVLLTTYEYIIKDRPLLSRIKWIYMIIDEGHRMKNTQSKLTNTLTTYYSSRYRLI 571
Query: 923 LTGTPLQNNIGEMYNLLNFLQPASFPSLSSFEEKFN------------DLTTTQK---VE 967
LTGTPLQNN+ E++ LLNF+ P F S+ SF+E FN +LT + +
Sbjct: 572 LTGTPLQNNLPELWALLNFVLPRIFNSIKSFDEWFNTPFANTGGQDKMELTEEESLLVIR 631
Query: 968 ELKKLVAPHMLRRLKKDAMQNIPPKTERMVPVELSSIQAEYYRAMLTKNYQILRNIGKG- 1026
L K++ P +LRRLKKD +P K E+++ ++S +Q + Y M + + +G
Sbjct: 632 RLHKVLRPFLLRRLKKDVEAELPDKVEKVIRCQMSGLQQKLYYQMKKHGMLYVEDAKRGK 691
Query: 1027 VAQQSMLNIVMQLRKVCNHPYLIPGTEPDSGSVEFLHEMRIKASAKLTLLHSMLKVLYKE 1086
+ + N VMQL+K+CNHP++ E F ++M + S K LL +L L++
Sbjct: 692 TGIKGLQNTVMQLKKICNHPFVFEDVERSIDPTGFNYDMLWRVSGKFELLDRILPKLFRS 751
Query: 1087 GHRVLIFSQMTKLLDILEDYLNIEFGPKTYERVDGSVSVGDRQAAITRFNQDKSRF-VFL 1145
GHR+L+F QMT++++I+EDYL+ + Y R+DGS DR + FN + +FL
Sbjct: 752 GHRILMFFQMTQIMNIMEDYLH--YRQWRYLRLDGSTKADDRSKLLGVFNDPTAEVNLFL 809
Query: 1146 LSTRSCGLGINLATADTVIIYDSDFNPHADIQAMNRAHRIGQSKRLLVYRLVVRASVEER 1205
LSTR+ GLG+NL TADTVII+DSD+NPH D+QA +RAHRIGQ+K + +YRL+ SVEE
Sbjct: 810 LSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQTKEVRIYRLITEKSVEEN 869
Query: 1206 ILQLAKKKLMLD----QL--FVNKSGSQKEVEDILR 1235
IL A+ KL +D Q F NKS + +E E LR
Sbjct: 870 ILARAQYKLDIDGKVIQAGKFDNKS-TPEEREAFLR 904
Score = 44 (20.5 bits), Expect = 1.4e-87, Sum P(3) = 1.4e-87
Identities = 17/49 (34%), Positives = 22/49 (44%)
Query: 501 KVTKECKGENAIDLLREDDKDSDPVAVNGKVQD----ESAVSTEDLGER 545
K+ + K LLR+ D D +A KVQ ESA ED+ R
Sbjct: 336 KLIDQAKDTRITHLLRQTDHYLDSLAAAVKVQQSQFGESAYD-EDMDRR 383
Score = 37 (18.1 bits), Expect = 1.4e-87, Sum P(3) = 1.4e-87
Identities = 14/57 (24%), Positives = 24/57 (42%)
Query: 1319 GDLENDMLGSVKATEWNEETT--EDQAESPVAAVDDASAEN--SERKEENAVTGIEE 1371
G+ END G + E NE +D+ +D E+ + KE+ + + E
Sbjct: 912 GEEENDEKGELDDDELNEILARGDDELRLFKQMTEDLERESPYGKNKEKERLIQVSE 968
>UNIPROTKB|H9L0N0 [details] [associations]
symbol:H9L0N0 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780 InterPro:IPR023779
PROSITE:PS00598 InterPro:IPR025260 Pfam:PF13907
GeneTree:ENSGT00560000076896 EMBL:AADN02032856 EMBL:AADN02032857
EMBL:AADN02032858 EMBL:AADN02032859 EMBL:AADN02032860
EMBL:AADN02032861 EMBL:AADN02032862 EMBL:AADN02032863
EMBL:AADN02032864 EMBL:AADN02032865 Ensembl:ENSGALT00000023599
Uniprot:H9L0N0
Length = 1444
Score = 884 (316.2 bits), Expect = 1.8e-87, Sum P(2) = 1.8e-87
Identities = 224/605 (37%), Positives = 331/605 (54%)
Query: 639 KRKLENYK---AKYGTTVINICDERWKQPQ---RVISLRSSKD--GTREAFVKWTGLPYD 690
KR L+N +Y D+ KQ Q R+I+ + K G + + KW GLPY
Sbjct: 35 KRWLKNASPEDVEYYNCQQEFTDDLHKQYQVVERIIAHSNQKSAAGYPDYYCKWQGLPYS 94
Query: 691 ECTWEKLDEPAL--EKYSHLTDLFVQFERQTLKKDASEDELPRGKGDCQQSEIVALTEQP 748
EC+WE + AL +K+ D + F R K +D K Q+ VAL +QP
Sbjct: 95 ECSWE---DGALIAKKFQACIDEY--FSRNQSKTTPFKD----CKILKQRPRFVALKKQP 145
Query: 749 EELKGG---ALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKAK 805
+ G L +QL LNWL W K + ILADEMGLGKT+ +F++ L+ E +
Sbjct: 146 FYIGGRDCLELRDYQLNGLNWLAHSWCKGNSCILADEMGLGKTIQTISFLNYLFHEHELY 205
Query: 806 LPCLVLVPLSTMPNWLAEFALWAPNLNVVEYHGCAKARAIIRQYEWHASDPDNLNKKTSS 865
P L++VPLST+ +W E WAP +N V Y G +R +IR +EW ++ +T
Sbjct: 206 GPFLLVVPLSTLTSWQREIQTWAPQMNAVVYLGDITSRNMIRTHEW-------MHPQTKR 258
Query: 866 YKFNVLLTTYEMILADSSHLRGVPWEVLVVDEGHRXXXXXXXXXXXXXXXXXQHRVLLTG 925
KFN+LLTTYE++L D S L G+ W + +DE HR HR+L+TG
Sbjct: 259 LKFNILLTTYEILLKDKSFLGGLNWVFIGIDEAHRLKNDDSLLYKTLIDFKSNHRLLITG 318
Query: 926 TPLQNNIGEMYNLLNFLQPASFPSLSSFEEKFNDLTTTQKVEELKKLVAPHMLRRLKKDA 985
TPLQN++ E+++LL+F+ P F S FEE+ L K + P +LRR+KKD
Sbjct: 319 TPLQNSLKELWSLLHFIMPEKFSSWEDFEEEHGK-GREFGYASLHKELEPFLLRRVKKDV 377
Query: 986 MQNIPPKTERMVPVELSSIQAEYYRAMLTKNYQILRNIGKGVAQQSMLNIVMQLRKVCNH 1045
+++P K E+++ +E+S++Q +YY+ +LT+NY+ L KG + LNI+M+L+K CNH
Sbjct: 378 EKSLPAKVEQILRMEMSALQKQYYKWILTRNYKALSKGSKG-STSGFLNIMMELKKCCNH 436
Query: 1046 PYLI--PGTEPDSGSVEFLHEMRIKASAKLTLLHSMLKVLYKEGHRVLIFSQMTKLLDIL 1103
YLI P E L + I++S KL LL +L L + G+RVLIFSQM ++LDIL
Sbjct: 437 CYLIKPPDDNEFYNKQEALQHL-IRSSGKLILLDKLLIRLRERGNRVLIFSQMVRMLDIL 495
Query: 1104 EDYLNIEFGPKTYERVDGSVSVGDRQAAITRFNQDKSR-----FVFLLSTRSCGLGINLA 1158
+YL P ++R+DGS+ R+ A+ FN + S F + L+ +S L +L
Sbjct: 496 AEYLKYRQFP--FQRLDGSIKGELRKQALDHFNAEGSENLTSLFCYHLTRKSLTLKTHLR 553
Query: 1159 TADTVIIYDSDFNPHADIQAMNRAHRIGQSKRLLVYRLVVRASVEERILQLAKKKLMLDQ 1218
+ I +NP + I A + I K++ +YRLV + SVEE IL+ AKKK++LD
Sbjct: 554 NGHNIDIIAFFWNPCSCINACFLSLNILTKKQVNIYRLVTKGSVEEDILERAKKKMVLDH 613
Query: 1219 LFVNK 1223
L + +
Sbjct: 614 LVIQR 618
Score = 67 (28.6 bits), Expect = 1.8e-87, Sum P(2) = 1.8e-87
Identities = 15/30 (50%), Positives = 19/30 (63%)
Query: 622 SNIHNSWIPESQLK---VLAKRKLENYKAK 648
S+IHN+W E LK V +KL+NYK K
Sbjct: 1 SHIHNTWESEETLKQHNVKGMKKLDNYKKK 30
>ZFIN|ZDB-GENE-040426-892 [details] [associations]
symbol:chd1l "chromodomain helicase DNA binding
protein 1-like" species:7955 "Danio rerio" [GO:0003677 "DNA
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0006338 "chromatin remodeling"
evidence=ISS] [GO:0006974 "response to DNA damage stimulus"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=IEA;ISS]
[GO:0000166 "nucleotide binding" evidence=IEA;ISS] [GO:0016887
"ATPase activity" evidence=ISS] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490 InterPro:IPR001357
ZFIN:ZDB-GENE-040426-892 GO:GO:0005524 GO:GO:0005634 GO:GO:0000166
GO:GO:0003677 GO:GO:0006281 GO:GO:0006974 GO:GO:0016887
GO:GO:0006338 GO:GO:0004386 SUPFAM:SSF52113 PROSITE:PS50172
HSSP:Q97XQ5 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR002589 PROSITE:PS51154 CTD:9557
HOGENOM:HOG000030789 HOVERGEN:HBG077542 OrthoDB:EOG4SXNBV
EMBL:BC050498 IPI:IPI00482841 RefSeq:NP_956607.1 UniGene:Dr.84280
ProteinModelPortal:Q7ZU90 PRIDE:Q7ZU90 GeneID:393283
KEGG:dre:393283 InParanoid:Q7ZU90 NextBio:20814340
ArrayExpress:Q7ZU90 Uniprot:Q7ZU90
Length = 1026
Score = 862 (308.5 bits), Expect = 1.9e-85, P = 1.9e-85
Identities = 207/517 (40%), Positives = 300/517 (58%)
Query: 744 LTEQPEELKG-GALF--PHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYC 800
LTE + G GA+ P+QL+ + WL C + IL DEMGLGKT + ++
Sbjct: 20 LTENDLKKWGLGAIHLRPYQLDGVKWLSLCMKNQQGCILGDEMGLGKTCQTISLLAYARG 79
Query: 801 EFKAKLPCLVLVPLSTMPNWLAEFALWAPNLNVVEYHGCAKARAIIRQYEWHASDPDNLN 860
K P LVL PL+ + NW E + P+L+V+ Y G + RA ++Q SDP
Sbjct: 80 SLKMNGPFLVLCPLAVLENWRQELERFCPSLSVICYTGDKEKRAELQQNL--KSDP---- 133
Query: 861 KKTSSYKFNVLLTTYEMILADSSHLRGVPWEVLVVDEGHRXXXXXXXXXXXXXXXXXQHR 920
+F+VLLTTYEM L D+ +L+ W++LVVDE HR R
Sbjct: 134 ------RFHVLLTTYEMCLKDARYLKSWKWKILVVDEAHRLKNQESLLHQTLKEFTVGFR 187
Query: 921 VLLTGTPLQNNIGEMYNLLNFLQPASF-P-SLSSFEEKFNDLTTTQK-VEELKKLVAPHM 977
VLLTGTP+QNN+ E+Y+LL F+QP+ F P ++ F + D+ T V+EL +++ P +
Sbjct: 188 VLLTGTPIQNNLQEVYSLLTFIQPSVFLPEAVEDFVNAYADIQTEPALVDELHQVLQPFL 247
Query: 978 LRRLKKDAMQNIPPKTERMVPVELSSIQAEYYRAMLTKNYQILRNIGKGVAQQSMLNIVM 1037
LRR+K + +P KTE +V LS++Q YY+A+L ++ R + +LN++M
Sbjct: 248 LRRVKAEVAAELPKKTELVVFHGLSALQKRYYKAILMRDLDAFRTDQS--TKTRLLNVLM 305
Query: 1038 QLRKVCNHPYLIPGTEPDSGSVEFLHEMRIKASAKLTLLHSMLKVLYKEGHRVLIFSQMT 1097
QLRK +HPYL G EP+ + E ++AS KL+LL SML L + GH VL+FSQMT
Sbjct: 306 QLRKCVDHPYLFDGVEPEPFE---MGEHLVEASGKLSLLDSMLAYLQEGGHHVLLFSQMT 362
Query: 1098 KLLDILEDYLNIEFGPKTYERVDGSVSVGDRQAAITRFNQDKSRFVFLLSTRSCGLGINL 1157
++LDIL+DYL E+ +YER+DGSV +R AI F+ K F+FLLST++ G+G+NL
Sbjct: 363 RMLDILQDYL--EYRGYSYERLDGSVRGEERNLAIKNFST-KDVFIFLLSTKAGGVGMNL 419
Query: 1158 ATADTVIIYDSDFNPHADIQAMNRAHRIGQSKRLLVYRLVVRASVEERILQLAKKKLMLD 1217
ADTVI D DFNP D+QA RAHRIGQ++ + V RL+ R ++EE I A KL L
Sbjct: 420 TAADTVIFVDGDFNPQNDLQAAARAHRIGQTRPVKVIRLLGRDTIEEIIYSRAVSKLRLT 479
Query: 1218 QLFVNK-----------SGSQKEVEDILRWGTEELFN 1243
+ + + S ++ +IL++G ++L +
Sbjct: 480 DTVIEEGRFSLLDQAQSAASGLQLSEILKFGVDKLLS 516
>WB|WBGene00004204 [details] [associations]
symbol:swsn-4 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0016817
"hydrolase activity, acting on acid anhydrides" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0016818 "hydrolase
activity, acting on acid anhydrides, in phosphorus-containing
anhydrides" evidence=IEA] [GO:0009792 "embryo development ending in
birth or egg hatching" evidence=IMP] [GO:0040010 "positive
regulation of growth rate" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0040035 "hermaphrodite genitalia development"
evidence=IMP] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 InterPro:IPR006576 InterPro:IPR014978
Pfam:PF00176 Pfam:PF00271 Pfam:PF00439 Pfam:PF07533 Pfam:PF08880
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 SMART:SM00592 SMART:SM00951 GO:GO:0005524
GO:GO:0005634 GO:GO:0009792 GO:GO:0040010 GO:GO:0006355
GO:GO:0003677 GO:GO:0040035 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 KO:K11647
GeneTree:ENSGT00550000074659 OMA:QKKYTIS InterPro:IPR013999
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 SMART:SM00573
PROSITE:PS51204 EMBL:Z68751 EMBL:Z68341 EMBL:AF230280 PIR:T20488
RefSeq:NP_502082.1 UniGene:Cel.23435 ProteinModelPortal:G5EF53
SMR:G5EF53 EnsemblMetazoa:F01G4.1 GeneID:178015
KEGG:cel:CELE_F01G4.1 CTD:178015 WormBase:F01G4.1 NextBio:899366
Uniprot:G5EF53
Length = 1474
Score = 861 (308.1 bits), Expect = 4.9e-85, Sum P(3) = 4.9e-85
Identities = 201/483 (41%), Positives = 287/483 (59%)
Query: 756 LFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKAKL-PCLVLVPL 814
L P+Q++ L W+ ++ + N ILADEMGLGKT+ + ++ L E K P LV+VPL
Sbjct: 533 LKPYQIKGLEWMVSLYNNNLNGILADEMGLGKTIQTISLVTYLM-EVKQNNGPYLVIVPL 591
Query: 815 STMPNWLAEFALWAPNLNVVEYHGCAKARAIIRQYEWHASDPDNLNKKTSSYKFNVLLTT 874
ST+ NW EFA WAP++ + Y G AR R+ E + K FNVL+TT
Sbjct: 592 STLSNWQNEFAKWAPSVTTIIYKGTKDAR---RRVE------GQIRKGA----FNVLMTT 638
Query: 875 YEMILADSSHLRGVPWEVLVVDEGHRXXXXX-XXXXXXXXXXXXQHRVLLTGTPLQNNIG 933
YE ++ + + L + W+ +++DEGHR QHR+LLTGTPLQN +
Sbjct: 639 YEYVIKEKALLGKIRWKYMIIDEGHRLKNHNCKLTLMLNGFFHAQHRLLLTGTPLQNKLP 698
Query: 934 EMYNLLNFLQPASFPSLSSFEEKFND--LTTTQKVE-----------ELKKLVAPHMLRR 980
E++ LLNFL P+ F S +FE+ FN TT +KVE L K++ P +LRR
Sbjct: 699 ELWALLNFLLPSIFSSCGTFEQWFNAPFATTGEKVELNQEETMLIIRRLHKVLRPFLLRR 758
Query: 981 LKKDAMQNIPPKTERMVPVELSSIQAEYYRAMLTKNYQILRNIGKGVAQQSMLNIVMQLR 1040
LKK+ +P KTE ++ + S++Q YR M K + + G +S++N V+ LR
Sbjct: 759 LKKEVESQLPDKTEYVIKCDQSALQKVIYRHM-QKGLLLDAKMSSGA--RSLMNTVVHLR 815
Query: 1041 KVCNHPYLIPGTEPDSGSVEFLHEMR----IKASAKLTLLHSMLKVLYKEGHRVLIFSQM 1096
K+CNHP+L P E + ++E+ ++ + KL LL +L L GHR+L+F QM
Sbjct: 816 KLCNHPFLFPNIEDSCRAYWKVNEVNGTDLMRVAGKLELLDRILPKLKATGHRILMFFQM 875
Query: 1097 TKLLDILEDYLNIEFGPKTYERVDGSVSVGDRQAAITRFNQDKSR-FVFLLSTRSCGLGI 1155
T +++I ED+LN F TY R+DGS +R +T+FN S F+F+LSTR+ GLG+
Sbjct: 876 TSMMNIFEDFLN--FRRYTYLRLDGSTKPDERGDLLTQFNAPNSDLFLFMLSTRAGGLGL 933
Query: 1156 NLATADTVIIYDSDFNPHADIQAMNRAHRIGQSKRLLVYRLVVRASVEERILQLAKKKLM 1215
NL TADTVII+DSD+NPH D+QA +RAHRIGQ K + V RL+ SVEE+IL A+ KL
Sbjct: 934 NLQTADTVIIFDSDWNPHQDMQAQDRAHRIGQKKEVRVLRLITANSVEEKILAAARYKLN 993
Query: 1216 LDQ 1218
+D+
Sbjct: 994 VDE 996
Score = 64 (27.6 bits), Expect = 4.9e-85, Sum P(3) = 4.9e-85
Identities = 17/67 (25%), Positives = 34/67 (50%)
Query: 243 HPAEEVLPHSQVT--KSEQNDEVPVEKHEKSSTNGSSGIKFVLAIGASERDRKRKPEVKD 300
HP E++P Q++ + E+ +E PVE E+ + + A E+ R + E D
Sbjct: 438 HPEYEIVPRDQLSDDEEEEEEEAPVEPEEEKDDQYAGMDEETKAKMILEKARNEEDEY-D 496
Query: 301 EDSQKKL 307
+ ++K++
Sbjct: 497 QKTKKQM 503
Score = 50 (22.7 bits), Expect = 4.9e-85, Sum P(3) = 4.9e-85
Identities = 40/190 (21%), Positives = 79/190 (41%)
Query: 1190 RLLVYRLVVRASVEERILQLAKKKLMLDQLFVNKSGSQKEVEDILRWGTEELFNDSPGIN 1249
+L V V++A ++ A++K ML+Q+ + G ++E E++ +E N +
Sbjct: 991 KLNVDEKVIQAGKFDQRSTGAERKQMLEQI-IQADGEEEEEEEV---PDDETVNQMVARS 1046
Query: 1250 GKDMGE-NNTSIEEAVRDLEQKHRKRGGGLGDVYQDKCTEGSTKIVWDENAIARLLDRSN 1308
++ + I+ + Q HRK L + + + + K+ +D + R +
Sbjct: 1047 EEEFNIFQSMDIDRRREEANQLHRKPR--L--LEEHEIPDDILKLSFDYEEMERAREEGR 1102
Query: 1309 LQSGSTD-----LAEGDLENDMLGSVKATEWNEETTEDQAESPVAAVDDASAENSERKEE 1363
T E D +D+L + + EE ED+ VA +RK +
Sbjct: 1103 EVVDQTPNQRRRRREVDYSSDLLSDEQFMKQVEEV-EDENNQAVAE------RKKQRKRK 1155
Query: 1364 NAVTGIEENE 1373
A G++EN+
Sbjct: 1156 MA--GLDEND 1163
>ASPGD|ASPL0000042729 [details] [associations]
symbol:AN2278 species:162425 "Emericella nidulans"
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0016586 "RSC complex" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
Pfam:PF08880 PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194
SMART:SM00297 SMART:SM00490 SMART:SM00951 GO:GO:0005524
GO:GO:0005634 GO:GO:0006355 GO:GO:0003677 EMBL:BN001307
GO:GO:0004386 EMBL:AACD01000038 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 PROSITE:PS51204
HOGENOM:HOG000172362 KO:K11786 OrthoDB:EOG4D565R RefSeq:XP_659882.1
ProteinModelPortal:Q5BB02 STRING:Q5BB02
EnsemblFungi:CADANIAT00008970 GeneID:2875521 KEGG:ani:AN2278.2
OMA:GSDHSSP Uniprot:Q5BB02
Length = 1407
Score = 889 (318.0 bits), Expect = 4.9e-85, Sum P(2) = 4.9e-85
Identities = 262/782 (33%), Positives = 401/782 (51%)
Query: 625 HNSWIPESQLKV--LAKRKLENYKAKYGTTVINICDERWKQPQRVISLRSSKDGTREAFV 682
H E Q +V AK++L+ KA T + + + + R+ L + DG F+
Sbjct: 413 HQHMEREEQRRVERTAKQRLQALKANDEETYLKLLGQA--KDSRISHLLNQTDG----FL 466
Query: 683 KWTGLPYDECTWEKLDEPALEKYSHLTDLFVQFERQTLKKDASEDELPRGKGD--CQQSE 740
K + ++ ++ E+Y D F + + + + E+ R K D
Sbjct: 467 KQLAASVRQ---QQRNQA--ERYGEEHD-FDDDDDEDIASGSDEEGEGRRKIDYYAVAHR 520
Query: 741 IVA-LTEQPEELKGGALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLY 799
I +TEQP L GG L +Q++ L W+ ++ + N ILADEMGLGKT+ + I+ +
Sbjct: 521 IKEEITEQPSILVGGTLKEYQMKGLQWMISLYNNNLNGILADEMGLGKTIQTISLITHII 580
Query: 800 CEFKAKLPCLVLVPLSTMPNWLAEFALWAPNLNVVEYHGCAKARAIIRQYEWHASDPDNL 859
+ P LV+VPLST+ NW EF WAP+++ + Y G AR +Q + N+
Sbjct: 581 ERKRNNGPFLVIVPLSTLTNWNLEFEKWAPSVSRIVYKGPPNAR---KQQQ------QNI 631
Query: 860 NKKTSSYKFNVLLTTYEMILADSSHLRGVPWEVLVVDEGHRXXXXXXXXXXXXXXX-XXQ 918
F VLLTTYE I+ D L + W ++VDEGHR +
Sbjct: 632 RWGN----FQVLLTTYEYIIKDRPILSKIKWTHMIVDEGHRMKNTQSKLSSTLSQYYTSR 687
Query: 919 HRVLLTGTPLQNNIGEMYNLLNFLQPASFPSLSSFEEKFN------------DLTTTQK- 965
+R++LTGTPLQNN+ E++ LLNF+ P F S+ SF+E FN DLT ++
Sbjct: 688 YRLILTGTPLQNNLPELWALLNFVLPNIFKSVKSFDEWFNTPFANTGGQDRMDLTEEEQL 747
Query: 966 --VEELKKLVAPHMLRRLKKDAMQNIPPKTERMVPVELSSIQAEYYRAMLTKNYQILRNI 1023
+ L K++ P +LRRLKKD +++P K ER++ S++QA+ + + T N ++ +
Sbjct: 748 LVIRRLHKVLRPFLLRRLKKDVEKDLPDKQERVIKCRFSALQAKLNKQLATHNKMVVSD- 806
Query: 1024 GKG--VAQQSMLNIVMQLRKVCNHPYLIPGTEPDSGSVEFLHEMRIKASAKLTLLHSMLK 1081
GKG V + + N++MQLRK+CNHP++ E +++ + + K LL +L
Sbjct: 807 GKGGKVGMRGLSNMLMQLRKLCNHPFVFEQVEDQVNPGRGTNDLIWRTAGKFELLDRILP 866
Query: 1082 VLYKEGHRVLIFSQMTKLLDILEDYLNIEFGPKTYERVDGSVSVGDRQAAITRFNQ-DKS 1140
GHRVL+F QMT++++I+ED+L + G K Y R+DGS DR + FN D
Sbjct: 867 KFKATGHRVLMFFQMTQIMNIMEDFLRLR-GMK-YLRLDGSTKSDDRSDLLKLFNAPDSE 924
Query: 1141 RFVFLLSTRSCGLGINLATADTVIIYDSDFNPHADIQAMNRAHRIGQSKRLLVYRLVVRA 1200
F FLLSTR+ GLG+NL TADTVII+DSD+NPH D+QA +RAHRIGQ + + RL+
Sbjct: 925 YFCFLLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRILRLITSN 984
Query: 1201 SVEERILQLAKKKLMLD----QL--FVNKSGSQKEVEDILRW------GTEELFNDSPGI 1248
SVEE+IL+ A+ KL +D Q F NKS + +E + +LR GT++ D +
Sbjct: 985 SVEEKILERAQFKLDMDGKVIQAGKFDNKS-TNEERDALLRTLLETAEGTDQA-GDQDEM 1042
Query: 1249 NGKDMGENNTSIEEAVRDLEQKHRKRGGGLGDVYQDKCTEGSTKIVWDENAIARLLDRSN 1308
+ D+ +E + ++ R+R Q C G + + RL+ S
Sbjct: 1043 DDDDLNNIMARSDEELAVFQRMDRER--------QKTCPYGPG------HKLPRLMGESE 1088
Query: 1309 LQ----SGSTDLAEGDLENDMLG----SVKATEWNEETTEDQAESPVAAVDDASAENSER 1360
L + +AE E ++ G K T +++ TE+Q V A DD + R
Sbjct: 1089 LPEIYVTEENPVAEEAAEIELSGRGARERKITRYDDGLTEEQWLMAVDADDDTIEDAIAR 1148
Query: 1361 KE 1362
KE
Sbjct: 1149 KE 1150
Score = 37 (18.1 bits), Expect = 4.9e-85, Sum P(2) = 4.9e-85
Identities = 11/37 (29%), Positives = 17/37 (45%)
Query: 1339 TEDQAESPVAAVDDASAENS-ERKEENAVTGIEENEW 1374
TE+ + AA + S + ERK G+ E +W
Sbjct: 1095 TEENPVAEEAAEIELSGRGARERKITRYDDGLTEEQW 1131
>UNIPROTKB|K7GT64 [details] [associations]
symbol:LOC100622433 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
Gene3D:1.20.920.10 SUPFAM:SSF47370 PROSITE:PS00633
InterPro:IPR018359 GeneTree:ENSGT00550000074659 EMBL:FP102365
Ensembl:ENSSSCT00000034320 Uniprot:K7GT64
Length = 980
Score = 824 (295.1 bits), Expect = 5.6e-85, Sum P(3) = 5.6e-85
Identities = 211/508 (41%), Positives = 283/508 (55%)
Query: 743 ALTEQPEE----LKGGALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSL 798
A+TE+ ++ + G L +Q++ L WL ++ + N ILADEMGLGKT+ A I+ L
Sbjct: 70 AVTERVDKQSALMVNGVLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTIALITYL 129
Query: 799 YCEFKAKLPCLVLVPLSTMPNWLAEFALWAPNLNVVEYHGCAKARAIIRQYEWHASDPDN 858
+ P L++VPLST+ NW EF WAP++ V Y G AR A P
Sbjct: 130 MEHKRINGPFLIIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAAR--------RAFVP-- 179
Query: 859 LNKKTSSYKFNVLLTTYEMILADSSHLRGVPWEVLVVDEGHRXXXXX-XXXXXXXXXXXX 917
+ S KFNVLLTTYE I+ D L + W+ ++VDEGHR
Sbjct: 180 ---QLRSGKFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVA 236
Query: 918 QHRVLLTGTPLQNNIGEMYNLLNFLQPASFPSLSSFEEKFND--LTTTQKV----EE--- 968
R+LLTGTPLQN + E++ LLNFL P F S S+FE+ FN T +KV EE
Sbjct: 237 PRRLLLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEETIL 296
Query: 969 ----LKKLVAPHMLRRLKKDAMQNIPPKTERMVPVELSSIQAEYYRAMLTKNYQILRNI- 1023
L K++ P +LRRLKK+ +P K E ++ ++S++Q YR M K +
Sbjct: 297 IIRRLHKVLRPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTDGSE 356
Query: 1024 ----GKGVAQQSMLNIVMQLRKVCNHPYLIPGTEPD--------SGSVEFLHEMRIKASA 1071
GKG ++++N +MQLRK+CNHPY+ E G V+ L R AS
Sbjct: 357 KDKKGKG-GTKTLMNTIMQLRKICNHPYMFQHIEESFSEHLGFTGGIVQGLDLYR--ASG 413
Query: 1072 KLTLLHSMLKVLYKEGHRVLIFSQMTKLLDILEDYLNIEFGPKTYERVDGSVSVGDRQAA 1131
K LL +L L H+VL+F QMT L+ I+EDY G K Y R+DG+ DR
Sbjct: 414 KFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYR-GFK-YLRLDGTTKAEDRGML 471
Query: 1132 ITRFNQDKSR-FVFLLSTRSCGLGINLATADTVIIYDSDFNPHADIQAMNRAHRIGQSKR 1190
+ FN+ S F+FLLSTR+ GLG+NL +ADTVII+DSD+NPH D+QA +RAHRIGQ
Sbjct: 472 LKTFNEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNE 531
Query: 1191 LLVYRLVVRASVEERILQLAKKKLMLDQ 1218
+ V RL SVEE+IL AK KL +DQ
Sbjct: 532 VRVLRLCTVNSVEEKILAAAKYKLNVDQ 559
Score = 43 (20.2 bits), Expect = 5.6e-85, Sum P(3) = 5.6e-85
Identities = 9/20 (45%), Positives = 11/20 (55%)
Query: 1351 DDASAENSERKEENAVTGIE 1370
DD+ E SE +EE G E
Sbjct: 901 DDSEGEESEEEEEGEEEGSE 920
Score = 40 (19.1 bits), Expect = 5.6e-85, Sum P(3) = 5.6e-85
Identities = 10/42 (23%), Positives = 22/42 (52%)
Query: 524 PVAVNGKVQDESAVSTEDLGERNDKMVVEDADVSLRDNEGLT 565
PV K+ D + +D+ E + + ++E+A + D G++
Sbjct: 16 PVEEKKKIPDPDS---DDVSEVDARHIIENAKQDVDDEYGVS 54
>UNIPROTKB|F1S594 [details] [associations]
symbol:LOC100622433 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 GO:GO:0005524 GO:GO:0003677 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10
SUPFAM:SSF47370 PROSITE:PS00633 InterPro:IPR018359
GeneTree:ENSGT00550000074659 EMBL:FP102365
Ensembl:ENSSSCT00000014884 OMA:KSSGHER Uniprot:F1S594
Length = 866
Score = 822 (294.4 bits), Expect = 8.9e-83, Sum P(2) = 8.9e-83
Identities = 208/493 (42%), Positives = 275/493 (55%)
Query: 754 GALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVP 813
G L +Q++ L WL ++ + N ILADEMGLGKT+ A I+ L + P L++VP
Sbjct: 4 GVLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRINGPFLIIVP 63
Query: 814 LSTMPNWLAEFALWAPNLNVVEYHGCAKARAIIRQYEWHASDPDNLNKKTSSYKFNVLLT 873
LST+ NW EF WAP++ V Y G AR A P + S KFNVLLT
Sbjct: 64 LSTLSNWAYEFDKWAPSVVKVSYKGSPAAR--------RAFVP-----QLRSGKFNVLLT 110
Query: 874 TYEMILADSSHLRGVPWEVLVVDEGHRXXXXX-XXXXXXXXXXXXQHRVLLTGTPLQNNI 932
TYE I+ D L + W+ ++VDEGHR R+LLTGTPLQN +
Sbjct: 111 TYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQNKL 170
Query: 933 GEMYNLLNFLQPASFPSLSSFEEKFND--LTTTQKV----EE-------LKKLVAPHMLR 979
E++ LLNFL P F S S+FE+ FN T +KV EE L K++ P +LR
Sbjct: 171 PELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEETILIIRRLHKVLRPFLLR 230
Query: 980 RLKKDAMQNIPPKTERMVPVELSSIQAEYYRAMLTKNYQILRNI-----GKGVAQQSMLN 1034
RLKK+ +P K E ++ ++S++Q YR M K + GKG ++++N
Sbjct: 231 RLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTDGSEKDKKGKG-GTKTLMN 289
Query: 1035 IVMQLRKVCNHPYLIPGTEPD--------SGSVEFLHEMRIKASAKLTLLHSMLKVLYKE 1086
+MQLRK+CNHPY+ E G V+ L R AS K LL +L L
Sbjct: 290 TIMQLRKICNHPYMFQHIEESFSEHLGFTGGIVQGLDLYR--ASGKFELLDRILPKLRAT 347
Query: 1087 GHRVLIFSQMTKLLDILEDYLNIEFGPKTYERVDGSVSVGDRQAAITRFNQDKSR-FVFL 1145
H+VL+F QMT L+ I+EDY G K Y R+DG+ DR + FN+ S F+FL
Sbjct: 348 NHKVLLFCQMTSLMTIMEDYFAYR-GFK-YLRLDGTTKAEDRGMLLKTFNEPGSEYFIFL 405
Query: 1146 LSTRSCGLGINLATADTVIIYDSDFNPHADIQAMNRAHRIGQSKRLLVYRLVVRASVEER 1205
LSTR+ GLG+NL +ADTVII+DSD+NPH D+QA +RAHRIGQ + V RL SVEE+
Sbjct: 406 LSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEK 465
Query: 1206 ILQLAKKKLMLDQ 1218
IL AK KL +DQ
Sbjct: 466 ILAAAKYKLNVDQ 478
Score = 43 (20.2 bits), Expect = 8.9e-83, Sum P(2) = 8.9e-83
Identities = 9/20 (45%), Positives = 11/20 (55%)
Query: 1351 DDASAENSERKEENAVTGIE 1370
DD+ E SE +EE G E
Sbjct: 787 DDSEGEESEEEEEGEEEGSE 806
>TAIR|locus:2173644 [details] [associations]
symbol:CHR1 "chromatin remodeling 1" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA;ISS] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0006349
"regulation of gene expression by genetic imprinting" evidence=IMP]
[GO:0044030 "regulation of DNA methylation" evidence=IMP]
[GO:0051574 "positive regulation of histone H3-K9 methylation"
evidence=IMP] [GO:0000786 "nucleosome" evidence=IDA] [GO:0004003
"ATP-dependent DNA helicase activity" evidence=IMP] [GO:0016887
"ATPase activity" evidence=IDA] [GO:0090241 "negative regulation of
histone H4 acetylation" evidence=IMP] [GO:0005515 "protein binding"
evidence=IPI] [GO:0006344 "maintenance of chromatin silencing"
evidence=IMP] [GO:0009294 "DNA mediated transformation"
evidence=IMP] [GO:0032197 "transposition, RNA-mediated"
evidence=IMP] [GO:0006342 "chromatin silencing" evidence=RCA]
[GO:0006346 "methylation-dependent chromatin silencing"
evidence=IMP;RCA] [GO:0008283 "cell proliferation" evidence=RCA]
[GO:0016246 "RNA interference" evidence=RCA] [GO:0016572 "histone
phosphorylation" evidence=RCA] [GO:0031048 "chromatin silencing by
small RNA" evidence=RCA] [GO:0051567 "histone H3-K9 methylation"
evidence=RCA] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0003677
GO:GO:0006351 GO:GO:0004003 GO:GO:0006349 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0009294
EMBL:AB018119 GO:GO:0000786 GO:GO:0051574 GO:GO:0044030
GO:GO:0090241 GO:GO:0032197 EMBL:AF143940 EMBL:AY099638
EMBL:BT002161 EMBL:AY699010 EMBL:AY699011 IPI:IPI00524705
RefSeq:NP_201476.1 UniGene:At.28851 ProteinModelPortal:Q9XFH4
SMR:Q9XFH4 STRING:Q9XFH4 PaxDb:Q9XFH4 PRIDE:Q9XFH4
EnsemblPlants:AT5G66750.1 GeneID:836808 KEGG:ath:AT5G66750
TAIR:At5g66750 HOGENOM:HOG000172362 InParanoid:Q9XFH4 OMA:ETFYTAI
PhylomeDB:Q9XFH4 ProtClustDB:CLSN2686877 Genevestigator:Q9XFH4
GO:GO:0006344 GO:GO:0006346 Uniprot:Q9XFH4
Length = 764
Score = 780 (279.6 bits), Expect = 3.6e-82, Sum P(3) = 3.6e-82
Identities = 198/514 (38%), Positives = 283/514 (55%)
Query: 751 LKGGALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLV 810
L GG L +QL+ + WL W N ILAD+MGLGKT+ F+S L P LV
Sbjct: 197 LTGGQLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIGFLSHLKGN-GLDGPYLV 255
Query: 811 LVPLSTMPNWLAEFALWAPNLNVVEYHGCAKARAIIRQYEWHASDPDNLNKKTSSYKFNV 870
+ PLST+ NW E A + P++N + YHG R +R+ H P KT KF +
Sbjct: 256 IAPLSTLSNWFNEIARFTPSINAIIYHGDKNQRDELRRK--HM--P-----KTVGPKFPI 306
Query: 871 LLTTYEMILADSSH-LRGVPWEVLVVDEGHRXXXXXXXXXXXXXXXXXQHRVLLTGTPLQ 929
++T+YE+ + D+ LR PW+ +V+DEGHR +++LLTGTPLQ
Sbjct: 307 VITSYEVAMNDAKRILRHYPWKYVVIDEGHRLKNHKCKLLRELKHLKMDNKLLLTGTPLQ 366
Query: 930 NNIGEMYNLLNFLQPASFPSLSSFEEKF-------NDLTT-------TQKVEELKKLVAP 975
NN+ E+++LLNF+ P F S FE F N+ T Q V +L ++ P
Sbjct: 367 NNLSELWSLLNFILPDIFTSHDEFESWFDFSEKNKNEATKEEEEKRRAQVVSKLHGILRP 426
Query: 976 HMLRRLKKDAMQNIPPKTERMVPVELSSIQAEYYRAMLTKNYQ--ILRNIGKGVAQQSML 1033
+LRR+K D ++P K E ++ ++ Q ++ ++ + + N +G + L
Sbjct: 427 FILRRMKCDVELSLPRKKEIIMYATMTDHQKKFQEHLVNNTLEAHLGENAIRGQGWKGKL 486
Query: 1034 N-IVMQLRKVCNHPYLIPGTEPDSGSVEFLHEMRIKASAKLTLLHSMLKVLYKEGHRVLI 1092
N +V+QLRK CNHP L+ G S + E+ + K LL +L L+ H+VLI
Sbjct: 487 NNLVIQLRKNCNHPDLLQGQIDGSYLYPPVEEI-VGQCGKFRLLERLLVRLFANNHKVLI 545
Query: 1093 FSQMTKLLDILEDYLNIEFGPKTYE--RVDGSVSVGDRQAAITRFNQDKSRF-VFLLSTR 1149
FSQ TKLLDI++ Y F K +E R+DGSV + +R+ I F+ +KS +FLLSTR
Sbjct: 546 FSQWTKLLDIMDYY----FSEKGFEVCRIDGSVKLDERRRQIKDFSDEKSSCSIFLLSTR 601
Query: 1150 SCGLGINLATADTVIIYDSDFNPHADIQAMNRAHRIGQSKRLLVYRLVVRASVEERILQL 1209
+ GLGINL ADT I+YDSD+NP D+QAM+R HRIGQ+K + VYRL S+E R+L+
Sbjct: 602 AGGLGINLTAADTCILYDSDWNPQMDLQAMDRCHRIGQTKPVHVYRLSTAQSIETRVLKR 661
Query: 1210 AKKKLMLDQLFVN---------KSGSQKEVEDIL 1234
A KL L+ + + KS + E EDIL
Sbjct: 662 AYSKLKLEHVVIGQGQFHQERAKSSTPLEEEDIL 695
Score = 57 (25.1 bits), Expect = 3.6e-82, Sum P(3) = 3.6e-82
Identities = 24/89 (26%), Positives = 41/89 (46%)
Query: 223 DDDEKQLNASPT--DSLADTKFHPAEEVLPHSQVTKSEQNDEVPVEKHEKSSTNGSSGIK 280
+D+EK NA +L +T+F +E+L T+++ E +EK E + NG
Sbjct: 79 EDEEKANNAGSAVAPNLNETQFTKLDELL-----TQTQLYSEFLLEKMEDITINGIESES 133
Query: 281 FVLAIGASERDRKRKPEVKDEDSQKKLRV 309
+ R RKRK + +++ K V
Sbjct: 134 QKAEPEKTGRGRKRKAASQYNNTKAKRAV 162
Score = 46 (21.3 bits), Expect = 3.6e-82, Sum P(3) = 3.6e-82
Identities = 9/26 (34%), Positives = 15/26 (57%)
Query: 20 RKRRKLPCGPGLSNGKEENLVTSESP 45
R R+ +P +S+GK E + +SP
Sbjct: 5 RSRKVIPASEMVSDGKTEKDASGDSP 30
>FB|FBgn0000212 [details] [associations]
symbol:brm "brahma" species:7227 "Drosophila melanogaster"
[GO:0043044 "ATP-dependent chromatin remodeling" evidence=ISS;IDA]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=ISS;IDA] [GO:0016887 "ATPase activity" evidence=ISS]
[GO:0008094 "DNA-dependent ATPase activity" evidence=NAS]
[GO:0003713 "transcription coactivator activity" evidence=ISS;NAS]
[GO:0005634 "nucleus" evidence=IDA;NAS] [GO:0048096
"chromatin-mediated maintenance of transcription" evidence=NAS]
[GO:0005515 "protein binding" evidence=IPI] [GO:0035060 "brahma
complex" evidence=IDA;TAS] [GO:0048477 "oogenesis" evidence=TAS]
[GO:0045749 "negative regulation of S phase of mitotic cell cycle"
evidence=IGI] [GO:0035172 "hemocyte proliferation" evidence=TAS]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0007474 "imaginal disc-derived wing vein specification"
evidence=IMP] [GO:0048666 "neuron development" evidence=IMP]
[GO:0007517 "muscle organ development" evidence=IMP] [GO:0048813
"dendrite morphogenesis" evidence=IMP] [GO:0006911 "phagocytosis,
engulfment" evidence=IMP] [GO:0007409 "axonogenesis" evidence=IMP]
[GO:0007480 "imaginal disc-derived leg morphogenesis" evidence=IGI]
[GO:0008586 "imaginal disc-derived wing vein morphogenesis"
evidence=IMP] [GO:0008587 "imaginal disc-derived wing margin
morphogenesis" evidence=IMP] [GO:0045742 "positive regulation of
epidermal growth factor receptor signaling pathway" evidence=IMP]
[GO:0070983 "dendrite guidance" evidence=IMP] [GO:0022008
"neurogenesis" evidence=IMP] [GO:0043974 "histone H3-K27
acetylation" evidence=IMP] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 InterPro:IPR006576 InterPro:IPR014978
Pfam:PF00176 Pfam:PF00271 Pfam:PF00439 Pfam:PF07533 Pfam:PF08880
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 SMART:SM00592 SMART:SM00951 GO:GO:0005524
GO:GO:0045893 GO:GO:0006911 EMBL:AE014296 GO:GO:0003677
GO:GO:0008586 GO:GO:0007474 GO:GO:0048477 GO:GO:0006351
GO:GO:0016887 GO:GO:0007517 GO:GO:0007409 GO:GO:0004386
GO:GO:0045742 GO:GO:0007480 GO:GO:0045749 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043044
Gene3D:1.20.920.10 SUPFAM:SSF47370 PROSITE:PS00633
InterPro:IPR018359 GO:GO:0008587 KO:K11647 EMBL:M85049
EMBL:AY095048 EMBL:BT009972 PIR:A42091 RefSeq:NP_536745.4
RefSeq:NP_536746.1 RefSeq:NP_730088.1 RefSeq:NP_730089.1
UniGene:Dm.5356 ProteinModelPortal:P25439 SMR:P25439 DIP:DIP-36728N
IntAct:P25439 MINT:MINT-6541230 STRING:P25439 PaxDb:P25439
EnsemblMetazoa:FBtr0075525 EnsemblMetazoa:FBtr0075526 GeneID:39744
KEGG:dme:Dmel_CG5942 CTD:39744 FlyBase:FBgn0000212
GeneTree:ENSGT00550000074659 InParanoid:P25439 OMA:QKKYTIS
OrthoDB:EOG4K3JB3 PhylomeDB:P25439 ChiTaRS:SMARCA2 GenomeRNAi:39744
NextBio:815155 Bgee:P25439 GermOnline:CG5942 GO:GO:0035060
GO:GO:0070983 GO:GO:0035172 GO:GO:0043974 InterPro:IPR013999
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 SMART:SM00573
PROSITE:PS51204 Uniprot:P25439
Length = 1638
Score = 856 (306.4 bits), Expect = 1.8e-81, Sum P(3) = 1.8e-81
Identities = 207/519 (39%), Positives = 299/519 (57%)
Query: 744 LTEQPEELKGGALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFK 803
+ EQ + G L +Q++ L WL ++ + N ILADEMGLGKT+ + ++ L K
Sbjct: 761 VVEQASIMVNGTLKEYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTISLVTYLMDRKK 820
Query: 804 AKLPCLVLVPLSTMPNWLAEFALWAPNLNVVEYHGCAKARAIIRQYEWHASDPDNLNKKT 863
P L++VPLST+PNW+ EF WAP + VV Y G + R +++ N + T
Sbjct: 821 VMGPYLIIVPLSTLPNWVLEFEKWAPAVGVVSYKGSPQGRRLLQ----------NQMRAT 870
Query: 864 SSYKFNVLLTTYEMILADSSHLRGVPWEVLVVDEGHRXXXXX-XXXXXXXXXXXXQHRVL 922
KFNVLLTTYE ++ D + L + W+ +++DEGHR +R+L
Sbjct: 871 ---KFNVLLTTYEYVIKDKAVLAKIQWKYMIIDEGHRMKNHHCKLTQVLNTHYIAPYRLL 927
Query: 923 LTGTPLQNNIGEMYNLLNFLQPASFPSLSSFEEKFND--LTTTQKVE-----------EL 969
LTGTPLQN + E++ LLNFL P+ F S S+FE+ FN TT +KVE L
Sbjct: 928 LTGTPLQNKLPELWALLNFLLPSIFKSCSTFEQWFNAPFATTGEKVELNEEETILIIRRL 987
Query: 970 KKLVAPHMLRRLKKDAMQNIPPKTERMVPVELSSIQAEYYRAMLTKNYQILRNI-----G 1024
K++ P +LRRLKK+ +P K E ++ ++S++Q Y+ M +K + G
Sbjct: 988 HKVLRPFLLRRLKKEVEHQLPDKVEYIIKCDMSALQRVLYKHMQSKGVLLTDGSEKGKHG 1047
Query: 1025 KGVAQQSMLNIVMQLRKVCNHPYLIPGTEPD----SGSVEFLHEMRI-KASAKLTLLHSM 1079
KG A+ +++N ++QLRK+CNHP++ E +G + + + S K LL +
Sbjct: 1048 KGGAK-ALMNTIVQLRKLCNHPFMFQHIEEKYCDHTGGHGVVSGPDLYRVSGKFELLDRI 1106
Query: 1080 LKVLYKEGHRVLIFSQMTKLLDILEDYLNI-EFGPKTYERVDGSVSVGDRQAAITRFNQD 1138
L L HRVL+F QMT+ + I+EDYL +FG Y R+DG+ DR + +FN
Sbjct: 1107 LPKLKATNHRVLLFCQMTQCMTIIEDYLGWRQFG---YLRLDGTTKAEDRGELLRKFNAK 1163
Query: 1139 KSR-FVFLLSTRSCGLGINLATADTVIIYDSDFNPHADIQAMNRAHRIGQSKRLLVYRLV 1197
S FVFLLSTR+ GLG+NL TADTV+I+DSD+NPH D+QA +RAHRIGQ + V RL+
Sbjct: 1164 GSDVFVFLLSTRAGGLGLNLQTADTVVIFDSDWNPHQDLQAQDRAHRIGQRNEVRVLRLM 1223
Query: 1198 VRASVEERILQLAKKKLMLDQ------LFVNKS-GSQKE 1229
SVEERIL A+ KL +D+ +F KS GS+++
Sbjct: 1224 TVNSVEERILAAARYKLNMDEKVIQAGMFDQKSTGSERQ 1262
Score = 490 (177.5 bits), Expect = 6.8e-40, Sum P(4) = 6.8e-40
Identities = 156/458 (34%), Positives = 238/458 (51%)
Query: 941 FLQPASFPSLSSFEE-KFNDLTTTQKVEELKKLVAPHMLRRLKKDAMQNIPPKTERMVPV 999
F Q + P ++ E+ + N+ T + L K++ P +LRRLKK+ +P K E ++
Sbjct: 958 FEQWFNAPFATTGEKVELNEEETILIIRRLHKVLRPFLLRRLKKEVEHQLPDKVEYIIKC 1017
Query: 1000 ELSSIQAEYYRAMLTKNYQILRNI-----GKGVAQQSMLNIVMQLRKVCNHPYLIPGTEP 1054
++S++Q Y+ M +K + GKG A+ +++N ++QLRK+CNHP++ E
Sbjct: 1018 DMSALQRVLYKHMQSKGVLLTDGSEKGKHGKGGAK-ALMNTIVQLRKLCNHPFMFQHIEE 1076
Query: 1055 D----SGSVEFLHEMRI-KASAKLTLLHSMLKVLYKEGHRVLIFSQMTKLLDILEDYLNI 1109
+G + + + S K LL +L L HRVL+F QMT+ + I+EDYL
Sbjct: 1077 KYCDHTGGHGVVSGPDLYRVSGKFELLDRILPKLKATNHRVLLFCQMTQCMTIIEDYLGW 1136
Query: 1110 -EFGPKTYERVDGSVSVGDRQAAITRFNQDKSR-FVFLLSTRSCGLGINLATADTVIIYD 1167
+FG Y R+DG+ DR + +FN S FVFLLSTR+ GLG+NL TADTV+I+D
Sbjct: 1137 RQFG---YLRLDGTTKAEDRGELLRKFNAKGSDVFVFLLSTRAGGLGLNLQTADTVVIFD 1193
Query: 1168 SDFNPHADIQAMNRAHRIGQSKRLLVYRLVVRASVEERILQLAKKKLMLDQ------LFV 1221
SD+NPH D+QA +RAHRIGQ + V RL+ SVEERIL A+ KL +D+ +F
Sbjct: 1194 SDWNPHQDLQAQDRAHRIGQRNEVRVLRLMTVNSVEERILAAARYKLNMDEKVIQAGMFD 1253
Query: 1222 NKS-GSQKE--VEDILRW--GTEELFNDSPGINGKDM--GENNTSIEEAVR-DLEQKHRK 1273
KS GS+++ ++ IL EE N+ P +M + IE R D E+K
Sbjct: 1254 QKSTGSERQQFLQTILHQDDNEEEEENEVPDDEMINMMIARSEEEIEIFKRMDAERKKED 1313
Query: 1274 RGGGLGDVYQDKCTEGSTKIVW---DENAIARLLDRSNLQ-SGSTDLAEGDLEN---DML 1326
G +++ + S W D++ + +R + Q T L G + D
Sbjct: 1314 EEIHPG---RERLIDESELPDWLTKDDDEV----ERFHYQYDEDTILGRGSRQRKEVDYT 1366
Query: 1327 GSVKATEWNEETTEDQAESPVAAVDDASAENSERKEEN 1364
S+ EW + +D AE +D S + RK +N
Sbjct: 1367 DSLTEKEWLK-AIDDGAEFDEEEEEDDS-KRKRRKRKN 1402
Score = 54 (24.1 bits), Expect = 1.8e-81, Sum P(3) = 1.8e-81
Identities = 20/77 (25%), Positives = 28/77 (36%)
Query: 201 CSTKPENTSAGVPVEGSSS--CPNDDDEKQLNASPTDSLADTKFHPAEEVLPHSQVTKSE 258
CST P + G PV G P +Q P P ++ P Q + +
Sbjct: 258 CSTPPASNPYGPPVPGQKMQVAPPPPHMQQGQPLPPQPPQVGGPPPIQQQQPPQQ--QQQ 315
Query: 259 QNDEVPVEKHEKSSTNG 275
Q+ P E H+ NG
Sbjct: 316 QSQPPPPEPHQHQLPNG 332
Score = 39 (18.8 bits), Expect = 2.6e-81, Sum P(4) = 2.6e-81
Identities = 7/19 (36%), Positives = 13/19 (68%)
Query: 289 ERDRKRKPEVKDEDSQKKL 307
E++R R+ +DE+ +KL
Sbjct: 564 EKERMRRLMAEDEEGYRKL 582
Score = 38 (18.4 bits), Expect = 2.6e-81, Sum P(4) = 2.6e-81
Identities = 11/38 (28%), Positives = 19/38 (50%)
Query: 360 GLDAQRKDELAEETTDPLDKSDKAGVHVNEIPLCKDIV 397
G + K ++ E+ T D +DKA N+ KD++
Sbjct: 697 GSNDDHKPKVEEQPTATEDATDKAQATGNDED-AKDLI 733
Score = 37 (18.1 bits), Expect = 1.8e-81, Sum P(3) = 1.8e-81
Identities = 8/31 (25%), Positives = 17/31 (54%)
Query: 338 EKQRTNNDEVSASLCEVDVGTKGLDAQRKDE 368
E++R + + + E + G + L Q+KD+
Sbjct: 559 EQERIEKERMRRLMAEDEEGYRKLIDQKKDK 589
>POMBASE|SPCC1620.14c [details] [associations]
symbol:snf22 "ATP-dependent DNA helicase Snf22"
species:4896 "Schizosaccharomyces pombe" [GO:0000122 "negative
regulation of transcription from RNA polymerase II promoter"
evidence=IEP] [GO:0000790 "nuclear chromatin" evidence=IC]
[GO:0000991 "core RNA polymerase II binding transcription factor
activity" evidence=ISO] [GO:0003677 "DNA binding" evidence=IC]
[GO:0004003 "ATP-dependent DNA helicase activity" evidence=ISM]
[GO:0005524 "ATP binding" evidence=IC] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005819 "spindle" evidence=IDA] [GO:0006338
"chromatin remodeling" evidence=IGI] [GO:0007131 "reciprocal
meiotic recombination" evidence=IMP] [GO:0010972 "negative
regulation of G2/M transition of mitotic cell cycle" evidence=IMP]
[GO:0016514 "SWI/SNF complex" evidence=IDA] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=ISS] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEP] [GO:1900389 "regulation of glucose import
by regulation of transcription from RNA polymerase II promoter"
evidence=IMP] [GO:1900400 "regulation of iron ion import by
regulation of transcription from RNA polymerase II promoter"
evidence=IMP] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 InterPro:IPR014978 InterPro:IPR017956
Pfam:PF00176 Pfam:PF00271 Pfam:PF00439 Pfam:PF08880 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00384
SMART:SM00490 SMART:SM00951 PomBase:SPCC1620.14c GO:GO:0005524
GO:GO:0005819 EMBL:CU329672 GenomeReviews:CU329672_GR GO:GO:0003677
GO:GO:0045944 GO:GO:0000122 GO:GO:0000790 GO:GO:0016514
GO:GO:0004003 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0043044 GO:GO:0000991 Gene3D:1.20.920.10
SUPFAM:SSF47370 PROSITE:PS00633 InterPro:IPR018359 GO:GO:0007131
InterPro:IPR014012 PROSITE:PS51204 GO:GO:0010972
HOGENOM:HOG000172362 KO:K11786 OrthoDB:EOG4D565R EMBL:AB162437
PIR:T41628 RefSeq:NP_588472.2 ProteinModelPortal:O94421
DIP:DIP-48377N STRING:O94421 PRIDE:O94421
EnsemblFungi:SPCC1620.14c.1 GeneID:2538881 KEGG:spo:SPCC1620.14c
NextBio:20800061 GO:GO:1900389 GO:GO:1900400 Uniprot:O94421
Length = 1680
Score = 858 (307.1 bits), Expect = 5.7e-81, Sum P(3) = 5.7e-81
Identities = 209/519 (40%), Positives = 299/519 (57%)
Query: 746 EQPEELKGGALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKAK 805
EQP+ GG L +QL+ L W+ ++ + N ILADEMGLGKT+ AFI+ L + +
Sbjct: 859 EQPKIFVGGTLKDYQLKGLEWMLSLYNNNLNGILADEMGLGKTIQTIAFITYLIEKKNQQ 918
Query: 806 LPCLVLVPLSTMPNWLAEFALWAPNLNVVEYHGCAKARAIIRQYEWHASDPDNLNKKTSS 865
P L++VPLST+ NW+ EF WAP++ + Y G + R L + S
Sbjct: 919 GPFLIIVPLSTLTNWIMEFEKWAPSVKKIAYKGPPQLRK-------------TLQSQIRS 965
Query: 866 YKFNVLLTTYEMILADSSHLRGVPWEVLVVDEGHRXXXXXXXXXXXXXXXX-XQHRVLLT 924
FNVLLTT+E I+ D L + W +++DEGHR Q+R++LT
Sbjct: 966 SNFNVLLTTFEYIIKDRPLLSRIKWVHMIIDEGHRIKNTQSKLTSTLSTYYHSQYRLILT 1025
Query: 925 GTPLQNNIGEMYNLLNFLQPASFPSLSSFEEKFND-LTTT---QKV----EE-------L 969
GTPLQNN+ E++ LLNF+ P F S+ SF+E FN T K+ EE L
Sbjct: 1026 GTPLQNNLPELWALLNFVLPKIFNSIKSFDEWFNTPFANTGGQDKIGLNEEEALLIIKRL 1085
Query: 970 KKLVAPHMLRRLKKDAMQNIPPKTERMVPVELSSIQAEYYRAMLTKNYQILRNIG-KG-V 1027
K++ P + RRLKKD + +P K E+++ LS +Q + Y+ M K + +L G KG
Sbjct: 1086 HKVLRPFLFRRLKKDVEKELPDKVEKVIKCPLSGLQLKLYQQM--KKHGMLFVDGEKGKT 1143
Query: 1028 AQQSMLNIVMQLRKVCNHPYLIPGTE----PDSGSVEFLHEMRIKASAKLTLLHSMLKVL 1083
+ + N VMQL+K+CNHP++ E P +V+ L +A+ K LL +L L
Sbjct: 1144 GIKGLQNTVMQLKKICNHPFIFEDVERAIDPSGTNVDLLW----RAAGKFELLDRILPKL 1199
Query: 1084 YKEGHRVLIFSQMTKLLDILEDYLNIEFGPKTYERVDGSVSVGDRQAAITRFNQDKSR-F 1142
+ GH+ L+F QMT+++ I+EDYL + Y R+DGS DR + + +FN KS +
Sbjct: 1200 FLTGHKTLMFFQMTQIMTIMEDYLRSKNWK--YLRLDGSTKSDDRCSLLAQFNDPKSDVY 1257
Query: 1143 VFLLSTRSCGLGINLATADTVIIYDSDFNPHADIQAMNRAHRIGQSKRLLVYRLVVRASV 1202
+F+LSTR+ GLG+NL TADTVII+D+D+NPH D+QA +RAHRIGQ+K + + RL+ S+
Sbjct: 1258 IFMLSTRAGGLGLNLQTADTVIIFDTDWNPHQDLQAQDRAHRIGQTKEVRILRLITEKSI 1317
Query: 1203 EERILQLAKKKLMLD----QL--FVNKSGSQKEVEDILR 1235
EE IL A+ KL LD Q F NKS + +E E LR
Sbjct: 1318 EENILSRAQYKLDLDGKVIQAGKFDNKS-TPEEREAFLR 1355
Score = 45 (20.9 bits), Expect = 5.7e-81, Sum P(3) = 5.7e-81
Identities = 20/84 (23%), Positives = 37/84 (44%)
Query: 1233 ILRWGTEELFNDSPGINGKDMGENNTSIEEAVRDLEQKHRKRGGGLGDVYQDKCTEGSTK 1292
+L + +N+ I +D +++E + DLE+ + L ++ E
Sbjct: 1589 MLMFNNAYTYNEEHSIVYEDAKLMEKTLKEVIEDLEKNN-----SLHAYEEEALNEEQAS 1643
Query: 1293 IVWDENAIARL-LDRSNLQSGSTD 1315
+V+ EN+ A L LD S + S D
Sbjct: 1644 LVFLENSEAELPLD-SGIVSAEDD 1666
Score = 40 (19.1 bits), Expect = 5.7e-81, Sum P(3) = 5.7e-81
Identities = 15/54 (27%), Positives = 27/54 (50%)
Query: 120 TQKNDQLKPISNLDSISKRARSKIITIKSQSGVKSSGADK-VSQIFGNSILARK 172
T K ++ I N +RA S I +K++S K S + + Q G + +A++
Sbjct: 503 TSKAPYIQNIPN--QFQRRAYSATIPVKNESLAKPSVSPMPLQQSTGKTEVAKR 554
>CGD|CAL0005444 [details] [associations]
symbol:SNF2 species:5476 "Candida albicans" [GO:0016514
"SWI/SNF complex" evidence=IPI] [GO:0009405 "pathogenesis"
evidence=IMP] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IMP] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IEA] [GO:0001102 "RNA polymerase II activating
transcription factor binding" evidence=IEA] [GO:0070577 "histone
acetyl-lysine binding" evidence=IEA] [GO:0031492 "nucleosomal DNA
binding" evidence=IEA] [GO:0016586 "RSC complex" evidence=IEA]
[GO:0044182 "filamentous growth of a population of unicellular
organisms" evidence=IMP] [GO:1900430 "positive regulation of
filamentous growth of a population of unicellular organisms"
evidence=IMP] [GO:0036178 "filamentous growth of a population of
unicellular organisms in response to neutral pH" evidence=IMP]
[GO:1900442 "positive regulation of filamentous growth of a
population of unicellular organisms in response to neutral pH"
evidence=IMP] [GO:0036180 "filamentous growth of a population of
unicellular organisms in response to biotic stimulus" evidence=IMP]
[GO:1900445 "positive regulation of filamentous growth of a
population of unicellular organisms in response to biotic stimulus"
evidence=IMP] [GO:0042766 "nucleosome mobilization" evidence=IEA]
[GO:0005987 "sucrose catabolic process" evidence=IEA] [GO:1900231
"regulation of single-species biofilm formation on inanimate
substrate" evidence=IEA] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0042148 "strand invasion"
evidence=IEA] [GO:0044109 "cellular alcohol catabolic process"
evidence=IEA] [GO:0006302 "double-strand break repair"
evidence=IEA] [GO:0031496 "positive regulation of mating type
switching" evidence=IEA] [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=IEA] [GO:0006261 "DNA-dependent DNA
replication" evidence=IEA] [GO:0061412 "positive regulation of
transcription from RNA polymerase II promoter in response to amino
acid starvation" evidence=IEA] [GO:0036244 "cellular response to
neutral pH" evidence=IMP] [GO:0071216 "cellular response to biotic
stimulus" evidence=IMP] [GO:0030447 "filamentous growth"
evidence=IMP] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 CGD:CAL0005444 GO:GO:0005524 GO:GO:0071216
GO:GO:0036244 GO:GO:0036180 GO:GO:0036178 GO:GO:0009405
GO:GO:1900445 GO:GO:1900442 GO:GO:0006355 GO:GO:0003677
GO:GO:0016514 GO:GO:0004386 EMBL:AACQ01000007 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 PROSITE:PS51204 KO:K11786
RefSeq:XP_722570.1 ProteinModelPortal:Q5AM49 MINT:MINT-2832160
STRING:Q5AM49 GeneID:3635855 KEGG:cal:CaO19.1526 Uniprot:Q5AM49
Length = 1690
Score = 826 (295.8 bits), Expect = 6.8e-81, Sum P(3) = 6.8e-81
Identities = 200/519 (38%), Positives = 298/519 (57%)
Query: 744 LTEQPEELKGGALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFK 803
+T+QP L GG L +QL+ L W+ ++ N ILADEMGLGKT+ + ++ L K
Sbjct: 769 VTKQPSILVGGTLKEYQLKGLQWMVSLFNNHLNGILADEMGLGKTIQTISLLTYLVEVKK 828
Query: 804 AKLPCLVLVPLSTMPNWLAEFALWAPNLNVVEYHGCAKARAIIRQYEWHASDPDNLNKKT 863
P LV+VPLST+ NW EF WAP++ + Y G R +++ H + +T
Sbjct: 829 IPGPFLVIVPLSTVTNWNLEFEKWAPSIKKITYKGTPNQRKVMQ----H-------DIRT 877
Query: 864 SSYKFNVLLTTYEMILADSSHLRGVPWEVLVVDEGHRXXXXXXXXXXXXXXXX-XQHRVL 922
+ F ++LTT+E ++ D L + W +++DEGHR +R++
Sbjct: 878 GN--FQLVLTTFEYVIKDKGLLGRIKWVHMIIDEGHRMKNANSKLSETLTQNYHSDYRLI 935
Query: 923 LTGTPLQNNIGEMYNLLNFLQPASFPSLSSFEEKFN------------DLT---TTQKVE 967
LTGTPLQNN+ E++ LLNF+ P F S+ SF+E FN +LT T +
Sbjct: 936 LTGTPLQNNLPELWALLNFVLPKIFNSVKSFDEWFNTPFANTGGQDKIELTEEETLLVIR 995
Query: 968 ELKKLVAPHMLRRLKKDAMQNIPPKTERMVPVELSSIQAEYYRAMLTKNYQILRNIGKG- 1026
L K++ P +LRRLKKD +++P K E++V + S++Q++ Y+ ML N + G
Sbjct: 996 RLHKVLRPFLLRRLKKDVEKDLPNKVEKVVKCKSSALQSKLYQQMLRYNMLYAGDPANGS 1055
Query: 1027 --VAQQSMLNIVMQLRKVCNHPYLIPGTEP-DSGSVEFLHEMRIKASAKLTLLHSMLKVL 1083
V ++ N +MQL+K+CNHP++ E + ++E ++ + + K LL +L
Sbjct: 1056 VPVTIKNANNQIMQLKKICNHPFVYEEVENLINPNIE-TNDQIWRVAGKFELLDKVLPKF 1114
Query: 1084 YKEGHRVLIFSQMTKLLDILEDYLNIEFGPKTYERVDGSVSVGDRQAAITRFNQ-DKSRF 1142
GH+VLIF QMT++++I+ED+L G K Y R+DG DR + FN D F
Sbjct: 1115 KATGHKVLIFFQMTQIMNIMEDFLRFR-GMK-YMRLDGGTKADDRTDLLKSFNAPDSDYF 1172
Query: 1143 VFLLSTRSCGLGINLATADTVIIYDSDFNPHADIQAMNRAHRIGQSKRLLVYRLVVRASV 1202
FLLSTR+ GLG+NL TADTVII+D+D+NPH D+QA +RAHRIGQ + + RL+ SV
Sbjct: 1173 CFLLSTRAGGLGLNLQTADTVIIFDTDWNPHQDLQAQDRAHRIGQKNEVRILRLITENSV 1232
Query: 1203 EERILQLAKKKLMLD----QL--FVNKSGSQKEVEDILR 1235
EE IL+ A KKL +D Q F NKS ++++ E +LR
Sbjct: 1233 EEMILERAHKKLEIDGKVIQAGKFDNKSTAEEQ-EAMLR 1270
Score = 67 (28.6 bits), Expect = 6.8e-81, Sum P(3) = 6.8e-81
Identities = 24/80 (30%), Positives = 38/80 (47%)
Query: 1259 SIEEAVRDLEQKHRKRGGGLGDVYQDKCTEGSTKIVWDENAIARLLDRSN--LQSGSTDL 1316
S+EE + LE+ H+K G V Q + + E + L+++ + Q G TD
Sbjct: 1231 SVEEMI--LERAHKKLEID-GKVIQAGKFDNKSTAEEQEAMLRALIEKEDERRQKGGTDE 1287
Query: 1317 AEGDLENDMLGSVKATEWNE 1336
E DL++D L + A NE
Sbjct: 1288 EEEDLDDDELNQIIARNENE 1307
Score = 53 (23.7 bits), Expect = 6.8e-81, Sum P(3) = 6.8e-81
Identities = 30/147 (20%), Positives = 61/147 (41%)
Query: 121 QKNDQLKPISNLDSISKRARSKIITIKSQ-SGVKSSGADK-------VSQIFGNSILARK 172
Q+ ++L+ +DS++++ K + +++Q S ++ K + FG S+L
Sbjct: 531 QEKERLR--KQIDSLNEKDTEKKLELETQLSQLELIPYQKDLRGKVLIQSWFGKSLLPNS 588
Query: 173 RSNKGKSVLALGVKSLEKSLDSSQVDVSCSTKPENTSAGVPVEGSSSCPNDDDEKQLNAS 232
N +L + S+ + D ++ + + +N G +E S + K + S
Sbjct: 589 HPNFLARFSSLSMDSVHMTTDLYRLQLESMMREQNKKHGKTIEEIISFSDRSSIKAVKKS 648
Query: 233 PTDSLADTKFHPAEEVLPHSQVTKSEQ 259
S TK + H+Q K EQ
Sbjct: 649 DRLSRFMTKINNF-----HNQTAKEEQ 670
Score = 43 (20.2 bits), Expect = 7.6e-80, Sum P(3) = 7.6e-80
Identities = 8/22 (36%), Positives = 16/22 (72%)
Query: 289 ERDRKRKPEVKDEDSQKKLRVD 310
ER RK+ + ++D++KKL ++
Sbjct: 534 ERLRKQIDSLNEKDTEKKLELE 555
Score = 37 (18.1 bits), Expect = 9.5e-78, Sum P(3) = 9.5e-78
Identities = 14/75 (18%), Positives = 37/75 (49%)
Query: 1203 EERILQLAKKKLMLDQLFVNKSGSQKEVED-ILRWGTEELFNDSPGINGKDMGENNTSIE 1261
E RIL+L + ++++ + ++ + E++ +++ G + K E ++
Sbjct: 1220 EVRILRLITEN-SVEEMILERAHKKLEIDGKVIQAGK---------FDNKSTAEEQEAML 1269
Query: 1262 EAVRDLEQKHRKRGG 1276
A+ + E + R++GG
Sbjct: 1270 RALIEKEDERRQKGG 1284
>UNIPROTKB|Q5AM49 [details] [associations]
symbol:SNF2 "Putative uncharacterized protein SNF2"
species:237561 "Candida albicans SC5314" [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IMP] [GO:0009405
"pathogenesis" evidence=IMP] [GO:0016514 "SWI/SNF complex"
evidence=IPI] [GO:0030447 "filamentous growth" evidence=IMP]
[GO:0036178 "filamentous growth of a population of unicellular
organisms in response to neutral pH" evidence=IMP] [GO:0036180
"filamentous growth of a population of unicellular organisms in
response to biotic stimulus" evidence=IMP] [GO:0036244 "cellular
response to neutral pH" evidence=IMP] [GO:0044182 "filamentous
growth of a population of unicellular organisms" evidence=IMP]
[GO:0071216 "cellular response to biotic stimulus" evidence=IMP]
[GO:1900430 "positive regulation of filamentous growth of a
population of unicellular organisms" evidence=IMP] [GO:1900442
"positive regulation of filamentous growth of a population of
unicellular organisms in response to neutral pH" evidence=IMP]
[GO:1900445 "positive regulation of filamentous growth of a
population of unicellular organisms in response to biotic stimulus"
evidence=IMP] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 CGD:CAL0005444 GO:GO:0005524 GO:GO:0071216
GO:GO:0036244 GO:GO:0036180 GO:GO:0036178 GO:GO:0009405
GO:GO:1900445 GO:GO:1900442 GO:GO:0006355 GO:GO:0003677
GO:GO:0016514 GO:GO:0004386 EMBL:AACQ01000007 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 PROSITE:PS51204 KO:K11786
RefSeq:XP_722570.1 ProteinModelPortal:Q5AM49 MINT:MINT-2832160
STRING:Q5AM49 GeneID:3635855 KEGG:cal:CaO19.1526 Uniprot:Q5AM49
Length = 1690
Score = 826 (295.8 bits), Expect = 6.8e-81, Sum P(3) = 6.8e-81
Identities = 200/519 (38%), Positives = 298/519 (57%)
Query: 744 LTEQPEELKGGALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFK 803
+T+QP L GG L +QL+ L W+ ++ N ILADEMGLGKT+ + ++ L K
Sbjct: 769 VTKQPSILVGGTLKEYQLKGLQWMVSLFNNHLNGILADEMGLGKTIQTISLLTYLVEVKK 828
Query: 804 AKLPCLVLVPLSTMPNWLAEFALWAPNLNVVEYHGCAKARAIIRQYEWHASDPDNLNKKT 863
P LV+VPLST+ NW EF WAP++ + Y G R +++ H + +T
Sbjct: 829 IPGPFLVIVPLSTVTNWNLEFEKWAPSIKKITYKGTPNQRKVMQ----H-------DIRT 877
Query: 864 SSYKFNVLLTTYEMILADSSHLRGVPWEVLVVDEGHRXXXXXXXXXXXXXXXX-XQHRVL 922
+ F ++LTT+E ++ D L + W +++DEGHR +R++
Sbjct: 878 GN--FQLVLTTFEYVIKDKGLLGRIKWVHMIIDEGHRMKNANSKLSETLTQNYHSDYRLI 935
Query: 923 LTGTPLQNNIGEMYNLLNFLQPASFPSLSSFEEKFN------------DLT---TTQKVE 967
LTGTPLQNN+ E++ LLNF+ P F S+ SF+E FN +LT T +
Sbjct: 936 LTGTPLQNNLPELWALLNFVLPKIFNSVKSFDEWFNTPFANTGGQDKIELTEEETLLVIR 995
Query: 968 ELKKLVAPHMLRRLKKDAMQNIPPKTERMVPVELSSIQAEYYRAMLTKNYQILRNIGKG- 1026
L K++ P +LRRLKKD +++P K E++V + S++Q++ Y+ ML N + G
Sbjct: 996 RLHKVLRPFLLRRLKKDVEKDLPNKVEKVVKCKSSALQSKLYQQMLRYNMLYAGDPANGS 1055
Query: 1027 --VAQQSMLNIVMQLRKVCNHPYLIPGTEP-DSGSVEFLHEMRIKASAKLTLLHSMLKVL 1083
V ++ N +MQL+K+CNHP++ E + ++E ++ + + K LL +L
Sbjct: 1056 VPVTIKNANNQIMQLKKICNHPFVYEEVENLINPNIE-TNDQIWRVAGKFELLDKVLPKF 1114
Query: 1084 YKEGHRVLIFSQMTKLLDILEDYLNIEFGPKTYERVDGSVSVGDRQAAITRFNQ-DKSRF 1142
GH+VLIF QMT++++I+ED+L G K Y R+DG DR + FN D F
Sbjct: 1115 KATGHKVLIFFQMTQIMNIMEDFLRFR-GMK-YMRLDGGTKADDRTDLLKSFNAPDSDYF 1172
Query: 1143 VFLLSTRSCGLGINLATADTVIIYDSDFNPHADIQAMNRAHRIGQSKRLLVYRLVVRASV 1202
FLLSTR+ GLG+NL TADTVII+D+D+NPH D+QA +RAHRIGQ + + RL+ SV
Sbjct: 1173 CFLLSTRAGGLGLNLQTADTVIIFDTDWNPHQDLQAQDRAHRIGQKNEVRILRLITENSV 1232
Query: 1203 EERILQLAKKKLMLD----QL--FVNKSGSQKEVEDILR 1235
EE IL+ A KKL +D Q F NKS ++++ E +LR
Sbjct: 1233 EEMILERAHKKLEIDGKVIQAGKFDNKSTAEEQ-EAMLR 1270
Score = 67 (28.6 bits), Expect = 6.8e-81, Sum P(3) = 6.8e-81
Identities = 24/80 (30%), Positives = 38/80 (47%)
Query: 1259 SIEEAVRDLEQKHRKRGGGLGDVYQDKCTEGSTKIVWDENAIARLLDRSN--LQSGSTDL 1316
S+EE + LE+ H+K G V Q + + E + L+++ + Q G TD
Sbjct: 1231 SVEEMI--LERAHKKLEID-GKVIQAGKFDNKSTAEEQEAMLRALIEKEDERRQKGGTDE 1287
Query: 1317 AEGDLENDMLGSVKATEWNE 1336
E DL++D L + A NE
Sbjct: 1288 EEEDLDDDELNQIIARNENE 1307
Score = 53 (23.7 bits), Expect = 6.8e-81, Sum P(3) = 6.8e-81
Identities = 30/147 (20%), Positives = 61/147 (41%)
Query: 121 QKNDQLKPISNLDSISKRARSKIITIKSQ-SGVKSSGADK-------VSQIFGNSILARK 172
Q+ ++L+ +DS++++ K + +++Q S ++ K + FG S+L
Sbjct: 531 QEKERLR--KQIDSLNEKDTEKKLELETQLSQLELIPYQKDLRGKVLIQSWFGKSLLPNS 588
Query: 173 RSNKGKSVLALGVKSLEKSLDSSQVDVSCSTKPENTSAGVPVEGSSSCPNDDDEKQLNAS 232
N +L + S+ + D ++ + + +N G +E S + K + S
Sbjct: 589 HPNFLARFSSLSMDSVHMTTDLYRLQLESMMREQNKKHGKTIEEIISFSDRSSIKAVKKS 648
Query: 233 PTDSLADTKFHPAEEVLPHSQVTKSEQ 259
S TK + H+Q K EQ
Sbjct: 649 DRLSRFMTKINNF-----HNQTAKEEQ 670
Score = 43 (20.2 bits), Expect = 7.6e-80, Sum P(3) = 7.6e-80
Identities = 8/22 (36%), Positives = 16/22 (72%)
Query: 289 ERDRKRKPEVKDEDSQKKLRVD 310
ER RK+ + ++D++KKL ++
Sbjct: 534 ERLRKQIDSLNEKDTEKKLELE 555
Score = 37 (18.1 bits), Expect = 9.5e-78, Sum P(3) = 9.5e-78
Identities = 14/75 (18%), Positives = 37/75 (49%)
Query: 1203 EERILQLAKKKLMLDQLFVNKSGSQKEVED-ILRWGTEELFNDSPGINGKDMGENNTSIE 1261
E RIL+L + ++++ + ++ + E++ +++ G + K E ++
Sbjct: 1220 EVRILRLITEN-SVEEMILERAHKKLEIDGKVIQAGK---------FDNKSTAEEQEAML 1269
Query: 1262 EAVRDLEQKHRKRGG 1276
A+ + E + R++GG
Sbjct: 1270 RALIEKEDERRQKGG 1284
>SGD|S000001388 [details] [associations]
symbol:STH1 "ATPase component of the RSC chromatin remodeling
complex" species:4932 "Saccharomyces cerevisiae" [GO:0005634
"nucleus" evidence=IEA;IDA] [GO:0007126 "meiosis" evidence=IMP]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IDA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA;IDA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;IMP] [GO:0007049 "cell cycle"
evidence=IEA] [GO:0016568 "chromatin modification" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0070577 "histone
acetyl-lysine binding" evidence=IDA] [GO:0006337 "nucleosome
disassembly" evidence=IDA] [GO:0016584 "nucleosome positioning"
evidence=IMP] [GO:0007010 "cytoskeleton organization"
evidence=IGI;IMP] [GO:0031055 "chromatin remodeling at centromere"
evidence=IMP] [GO:0007059 "chromosome segregation" evidence=IGI]
[GO:0016586 "RSC complex" evidence=IDA] [GO:0043044 "ATP-dependent
chromatin remodeling" evidence=IDA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0000086 "G2/M transition of mitotic cell cycle" evidence=IMP]
[GO:0006368 "transcription elongation from RNA polymerase II
promoter" evidence=IDA] [GO:0006302 "double-strand break repair"
evidence=IMP] [GO:0015616 "DNA translocase activity" evidence=IDA]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 Pfam:PF00439 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SGD:S000001388 GO:GO:0005524 GO:GO:0007126 GO:GO:0000086
GO:GO:0007010 GO:GO:0007059 GO:GO:0000775 GO:GO:0006355
EMBL:BK006942 GO:GO:0006302 GO:GO:0004386 GO:GO:0006368
GO:GO:0006337 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0016586 GO:GO:0043044 GO:GO:0016584
EMBL:DQ115392 Gene3D:1.20.920.10 SUPFAM:SSF47370 PROSITE:PS00633
GO:GO:0070577 InterPro:IPR018359 EMBL:Z46833 InterPro:IPR014012
PROSITE:PS51204 GeneTree:ENSGT00670000098110 HOGENOM:HOG000172362
GO:GO:0015616 GO:GO:0031055 KO:K11786 OrthoDB:EOG4D565R EMBL:D10595
EMBL:M83755 PIR:S49883 RefSeq:NP_012140.1 ProteinModelPortal:P32597
SMR:P32597 DIP:DIP-5889N IntAct:P32597 MINT:MINT-615490
STRING:P32597 PaxDb:P32597 PeptideAtlas:P32597 EnsemblFungi:YIL126W
GeneID:854680 KEGG:sce:YIL126W CYGD:YIL126w OMA:MEDFLRM
NextBio:977286 Genevestigator:P32597 GermOnline:YIL126W
Uniprot:P32597
Length = 1359
Score = 848 (303.6 bits), Expect = 8.6e-81, Sum P(3) = 8.6e-81
Identities = 207/523 (39%), Positives = 298/523 (56%)
Query: 744 LTEQPEELKGGALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFK 803
+ +QP L GG L +QL L W+ ++ N ILADEMGLGKT+ + + I+ LY E K
Sbjct: 458 IDKQPSILVGGTLKEYQLRGLEWMVSLYNNHLNGILADEMGLGKTIQSISLITYLY-EVK 516
Query: 804 AKL-PCLVLVPLSTMPNWLAEFALWAPNLNVVEYHGCAKARAIIRQYEWHASDPDNLNKK 862
+ P LV+VPLST+ NW EF WAP+LN + Y G R H+ L +
Sbjct: 517 KDIGPFLVIVPLSTITNWTLEFEKWAPSLNTIIYKGTPNQR--------HS-----LQHQ 563
Query: 863 TSSYKFNVLLTTYEMILADSSHLRGVPWEVLVVDEGHRXXXXXXXXXXXXXXXX-XQHRV 921
F+VLLTTYE I+ D S L W +++DEGHR ++R+
Sbjct: 564 IRVGNFDVLLTTYEYIIKDKSLLSKHDWAHMIIDEGHRMKNAQSKLSFTISHYYRTRNRL 623
Query: 922 LLTGTPLQNNIGEMYNLLNFLQPASFPSLSSFEEKFN----DLTTTQKVE---------- 967
+LTGTPLQNN+ E++ LLNF+ P F S +FE+ FN + T +K+E
Sbjct: 624 ILTGTPLQNNLPELWALLNFVLPKIFNSAKTFEDWFNTPFANTGTQEKLELTEEETLLII 683
Query: 968 -ELKKLVAPHMLRRLKKDAMQNIPPKTERMVPVELSSIQAEYYRAMLTKNYQILRNIGKG 1026
L K++ P +LRRLKK+ +++P K E+++ +LS +Q + Y+ ML N + +G
Sbjct: 684 RRLHKVLRPFLLRRLKKEVEKDLPDKVEKVIKCKLSGLQQQLYQQMLKHNALFVGAGTEG 743
Query: 1027 VAQ---QSMLNIVMQLRKVCNHPYLIPGTE----PDSGSVEFLHEMRIKASAKLTLLHSM 1079
+ + + N +MQLRK+CNHP++ E P G+ + L + + K LL +
Sbjct: 744 ATKGGIKGLNNKIMQLRKICNHPFVFDEVEGVVNPSRGNSDLL----FRVAGKFELLDRV 799
Query: 1080 LKVLYKEGHRVLIFSQMTKLLDILEDYLNIEFGPKTYERVDGSVSVGDRQAAITRFNQ-D 1138
L GHRVL+F QMT+++DI+ED+L ++ Y R+DGS +R + FN D
Sbjct: 800 LPKFKASGHRVLMFFQMTQVMDIMEDFLRMK--DLKYMRLDGSTKTEERTEMLNAFNAPD 857
Query: 1139 KSRFVFLLSTRSCGLGINLATADTVIIYDSDFNPHADIQAMNRAHRIGQSKRLLVYRLVV 1198
F FLLSTR+ GLG+NL TADTVII+D+D+NPH D+QA +RAHRIGQ + + RL+
Sbjct: 858 SDYFCFLLSTRAGGLGLNLQTADTVIIFDTDWNPHQDLQAQDRAHRIGQKNEVRILRLIT 917
Query: 1199 RASVEERILQLAKKKLMLD----QL--FVNKSGSQKEVEDILR 1235
SVEE IL+ A +KL +D Q F NKS ++++ E LR
Sbjct: 918 TDSVEEVILERAMQKLDIDGKVIQAGKFDNKSTAEEQ-EAFLR 959
Score = 45 (20.9 bits), Expect = 8.6e-81, Sum P(3) = 8.6e-81
Identities = 25/120 (20%), Positives = 47/120 (39%)
Query: 1255 ENNTSIEEAV---RDLEQKHRKRGGGLGDVYQDKCTEGSTKIVWDENAIARLLDRSNLQS 1311
++N S+E+A+ R+ ++ R R G K E T E + L++ ++ +
Sbjct: 1074 DDNMSLEDAIKKRREARERRRLRQNGT------KENEIETLENTPEASETSLIENNSFTA 1127
Query: 1312 GSTDLAEGDLENDMLGSVKATEWNEETTEDQAESPVAAVDDASAENSERKEENAVTGIEE 1371
+ D E S + + + T S V A D + + +EN +EE
Sbjct: 1128 AVDEETNADKETTASRSKRRSSRKKRTI-----SIVTAEDKENTQEESTSQENGGAKVEE 1182
Score = 38 (18.4 bits), Expect = 8.6e-81, Sum P(3) = 8.6e-81
Identities = 14/67 (20%), Positives = 32/67 (47%)
Query: 127 KPISNLDSISKRARSKIITIKSQSGVKSSGADKVSQIFGNSILARKRSNKGKSVLALGVK 186
KPI + +A+S + K + K++ D ++I ++ ++ + + + LG
Sbjct: 157 KPIKISADFNAKAKSLGLESKFSNATKTALGDPDTEIRISARISNRINELERLPANLGTY 216
Query: 187 SLEKSLD 193
SL+ L+
Sbjct: 217 SLDDCLE 223
>UNIPROTKB|D4A4J2 [details] [associations]
symbol:Smarca2 "Protein Smarca2" species:10116 "Rattus
norvegicus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR006576
InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271 Pfam:PF07533
Pfam:PF08880 PROSITE:PS51194 SMART:SM00490 SMART:SM00592
SMART:SM00951 RGD:1302988 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
IPI:IPI00777186 Ensembl:ENSRNOT00000016283 ArrayExpress:D4A4J2
Uniprot:D4A4J2
Length = 1506
Score = 834 (298.6 bits), Expect = 4.9e-80, Sum P(2) = 4.9e-80
Identities = 210/535 (39%), Positives = 294/535 (54%)
Query: 718 QTLKKDASEDELPRGKGDCQQSEIV---ALTEQPEE----LKGGALFPHQLEALNWLRKC 770
+T K+D ++ + QS A++E+ E+ L G L +QL+ L W+
Sbjct: 686 ETAKQDVDDEYSMQYSARGSQSYYTVAHAISERVEKQSALLINGTLKHYQLQGLEWMVSL 745
Query: 771 WHKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLSTMPNWLAEFALWAPN 830
++ + N ILADEMGLGKT+ A I+ L + P L++VPLST+ NW EF WAP+
Sbjct: 746 YNNNLNGILADEMGLGKTIQTIALITYLMEHKRLNGPYLIIVPLSTLSNWTYEFDKWAPS 805
Query: 831 LNVVEYHGC-AKARAIIRQYEWHASDPDNLNKKTSSYKFNVLLTTYEMILADSSHLRGVP 889
+ + Y G A R+++ Q S KFNVLLTTYE I+ D L +
Sbjct: 806 VVKISYKGTPAMRRSLVPQLR--------------SGKFNVLLTTYEYIIKDKHILAKIR 851
Query: 890 WEVLVVDEGHRXXXXX-XXXXXXXXXXXXQHRVLLTGTPLQNNIGEMYNLLNFLQPASFP 948
W+ ++VDEGHR R+LLTGTPLQN + E++ LLNFL P F
Sbjct: 852 WKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRILLTGTPLQNKLPELWALLNFLLPTIFK 911
Query: 949 SLSSFEEKFN----------DLTTTQKV---EELKKLVAPHMLRRLKKDAMQNIPPKTER 995
S S+FE+ FN DL + + L K++ P +LRRLKK+ +P K E
Sbjct: 912 SCSTFEQWFNAPFAMTGERVDLNEEETILIIRRLHKVLRPFLLRRLKKEVESQLPEKVEY 971
Query: 996 MVPVELSSIQAEYYRAMLTKNYQILRNI-----GKGVAQQSMLNIVMQLRKVCNHPYLIP 1050
++ ++S++Q YR M K + GKG A+ +++N +MQLRK+CNHPY+
Sbjct: 972 VIKCDMSALQKILYRHMQAKGILLTDGSEKDKKGKGGAK-TLMNTIMQLRKICNHPYMFQ 1030
Query: 1051 GTEPDSG-----SVEFLHEMRI-KASAKLTLLHSMLKVLYKEGHRVLIFSQMTKLLDILE 1104
E S ++ + +AS K LL +L L HRVL+F QMT L+ I+E
Sbjct: 1031 HIEESFAEHLGYSNGVINGAELYRASGKFELLDRILPKLRATNHRVLLFCQMTSLMTIME 1090
Query: 1105 DYLNIEFGPKTYERVDGSVSVGDRQAAITRFNQDKSR-FVFLLSTRSCGLGINLATADTV 1163
DY F Y R+DG+ DR A + +FN+ S+ F+FLLSTR+ GLG+NL ADTV
Sbjct: 1091 DYF--AFRNFLYLRLDGTTKSEDRAALLKKFNEPGSQYFIFLLSTRAGGLGLNLQAADTV 1148
Query: 1164 IIYDSDFNPHADIQAMNRAHRIGQSKRLLVYRLVVRASVEERILQLAKKKLMLDQ 1218
+I+DSD+NPH D+QA +RAHRIGQ + V RL SVEE+IL AK KL +DQ
Sbjct: 1149 VIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQ 1203
Score = 53 (23.7 bits), Expect = 4.9e-80, Sum P(2) = 4.9e-80
Identities = 22/76 (28%), Positives = 35/76 (46%)
Query: 232 SPTDSLADT--KFHPAEEVLPHSQVTKSEQNDEVPVEKHEKSSTNGSSGIKFVLAIGA-- 287
+P S D + +P EV P S +SE + E E E+ S+ + K +L +
Sbjct: 618 APKASQLDAWLEMNPGYEVAPRSDSEESESDYEE--EDEEEESSRQETEEKILLDPNSEE 675
Query: 288 -SERDRKRKPEVKDED 302
SE+D K+ E +D
Sbjct: 676 VSEKDAKQIIETAKQD 691
Score = 40 (19.1 bits), Expect = 4.9e-78, Sum P(3) = 4.9e-78
Identities = 13/60 (21%), Positives = 29/60 (48%)
Query: 509 ENAIDLLREDDKD-SDPVAVNGKVQDESAVSTEDLGERNDKMVVEDADVSLRDNEGLTVS 567
E+ D ED+++ S K+ + ++E++ E++ K ++E A + D + S
Sbjct: 644 ESESDYEEEDEEEESSRQETEEKILLDP--NSEEVSEKDAKQIIETAKQDVDDEYSMQYS 701
Score = 39 (18.8 bits), Expect = 4.9e-78, Sum P(3) = 4.9e-78
Identities = 7/19 (36%), Positives = 13/19 (68%)
Query: 289 ERDRKRKPEVKDEDSQKKL 307
E++R R+ +DE+ +KL
Sbjct: 506 EKERMRRLMAEDEEGYRKL 524
Score = 37 (18.1 bits), Expect = 1.0e-77, Sum P(3) = 1.0e-77
Identities = 11/50 (22%), Positives = 23/50 (46%)
Query: 532 QDESAVSTEDLGERNDKMVVEDADVSLRDNEGLTVSEIHITCESTDKDVD 581
+ ES ED E + + E+ + ++E ++ + E+ +DVD
Sbjct: 644 ESESDYEEEDEEEESSRQETEEKILLDPNSEEVSEKDAKQIIETAKQDVD 693
>WB|WBGene00016868 [details] [associations]
symbol:C52B9.8 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003677 GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
KO:K11647 GeneTree:ENSGT00550000074659 InterPro:IPR013999
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 SMART:SM00573
PROSITE:PS51204 EMBL:FO080644 PIR:T28937 RefSeq:NP_508736.1
ProteinModelPortal:Q22944 SMR:Q22944 STRING:Q22944 PaxDb:Q22944
EnsemblMetazoa:C52B9.8 GeneID:180705 KEGG:cel:CELE_C52B9.8
UCSC:C52B9.8 CTD:180705 WormBase:C52B9.8 InParanoid:Q22944
NextBio:910548 Uniprot:Q22944
Length = 1336
Score = 842 (301.5 bits), Expect = 6.6e-80, Sum P(2) = 6.6e-80
Identities = 215/544 (39%), Positives = 315/544 (57%)
Query: 756 LFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLS 815
L P+Q++ L W+ ++ + N ILADEMGLGKT+ AFI+ L K P LV+VPLS
Sbjct: 366 LKPYQIKGLEWMVSLFNNNLNGILADEMGLGKTIQTIAFITYLMEIKKTSGPFLVIVPLS 425
Query: 816 TMPNWLAEFALWAPNLNVVEYHGCAKARAIIRQYEWHASDPDNLNKKTSSYKFNVLLTTY 875
T+PNW EF WA N++++ Y G + R + +P + K S KFNVLLTT+
Sbjct: 426 TVPNWQNEFDKWAANVHLIAYKGPKETRKVF--------EP--IIK---SGKFNVLLTTF 472
Query: 876 EMILADSSHLRGVPWEVLVVDEGHRXXXXXXXXXXXXXXXXX-QHRVLLTGTPLQNNIGE 934
E ++ + + L + W+ +++DEGHR Q R+L+TGTPLQN + E
Sbjct: 473 EYVIREKALLGKLRWKYMIIDEGHRLKNQHCKLTEMLNTRFQCQRRLLITGTPLQNKLPE 532
Query: 935 MYNLLNFLQPASFPSLSSFEEKFND--LTTTQKVE-----------ELKKLVAPHMLRRL 981
++ LLNFL P+ F S S+FE+ FN TT +KVE L K++ P +LRRL
Sbjct: 533 LWALLNFLLPSIFSSCSTFEQWFNAPFATTGEKVELTQEETMLIIRRLHKVLRPFLLRRL 592
Query: 982 KKDAMQNIPPKTERMVPVELSSIQAEYYRAMLTKNYQILRNIGKGVAQQSMLNIVMQLRK 1041
KK+ +P K E +V ++S++Q Y+ M K +L + +S+ N ++ LRK
Sbjct: 593 KKEVESELPDKMEFVVRCDMSALQKVLYKHM-QKG--LLLDGKTNTGSKSLRNTMIHLRK 649
Query: 1042 VCNHPYLIPGTEPDSGS---VEFLHEMRI-KASAKLTLLHSMLKVLYKEGHRVLIFSQMT 1097
+CNHP+L E + F+ + + + S KL LL +L L GHRVL+F QMT
Sbjct: 650 LCNHPFLFENVEESCRNFWDARFISAVDLYRVSGKLELLSRILPKLQATGHRVLMFFQMT 709
Query: 1098 KLLDILEDYLNIEFGPKTYERVDGSVSVGDRQAAITRFNQDKSR-FVFLLSTRSCGLGIN 1156
++ I+ED+L G Y R+DGS +R A + +FN S F+F+LSTR+ GLG+N
Sbjct: 710 SMMTIVEDFL--AGGTIQYLRLDGSTKPDERGALLDKFNAPNSEYFLFMLSTRAGGLGLN 767
Query: 1157 LATADTVIIYDSDFNPHADIQAMNRAHRIGQSKRLLVYRLVVRASVEERILQLAKKKLML 1216
L TADTVII+DSD+NPH D+QA +RAHRIGQ + V+RL+ SVEE+IL A+ KL +
Sbjct: 768 LQTADTVIIFDSDWNPHQDMQAQDRAHRIGQKAEVRVFRLITANSVEEKILAAARYKLNV 827
Query: 1217 DQL------FVNKS-GSQKE--VEDILRWGTE-ELFNDSPGINGKDMGENNTSIEEAVRD 1266
D+ F N+S G+++ +E+I++ TE E D N +D+ + + EE +
Sbjct: 828 DEKVIQAGKFDNRSTGAERREILENIIK--TENESEEDEEVPNDEDINDILSRSEEEF-E 884
Query: 1267 LEQK 1270
L QK
Sbjct: 885 LFQK 888
Score = 38 (18.4 bits), Expect = 6.6e-80, Sum P(2) = 6.6e-80
Identities = 10/46 (21%), Positives = 20/46 (43%)
Query: 1330 KATEWNEETTEDQAESPVAAVDDASAENSERKEENAVTGIEENEWD 1375
K E +++ +D+ + D+ E RKE + +E + D
Sbjct: 1251 KEKEKHKDKDKDKEHKKKSREDETEEERRARKEAKRLKRQKEEQED 1296
>UNIPROTKB|E9PTG1 [details] [associations]
symbol:Smarca2 "Protein Smarca2" species:10116 "Rattus
norvegicus" [GO:0000790 "nuclear chromatin" evidence=IEA]
[GO:0001105 "RNA polymerase II transcription coactivator activity"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008285 "negative
regulation of cell proliferation" evidence=IEA] [GO:0016514
"SWI/SNF complex" evidence=IEA] [GO:0030308 "negative regulation of
cell growth" evidence=IEA] [GO:0035887 "aortic smooth muscle cell
differentiation" evidence=IEA] [GO:0044212 "transcription
regulatory region DNA binding" evidence=IEA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IEA] [GO:0045892
"negative regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0071564 "npBAF complex" evidence=IEA] [GO:0071565 "nBAF
complex" evidence=IEA] [GO:0071778 "WINAC complex" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR006576 InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271
Pfam:PF00439 Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SMART:SM00592 SMART:SM00951 RGD:1302988 GO:GO:0005524 GO:GO:0045892
GO:GO:0008285 GO:GO:0030308 GO:GO:0045944 GO:GO:0044212
GO:GO:0045111 GO:GO:0000790 GO:GO:0071564 GO:GO:0016514
GO:GO:0071565 GO:GO:0004386 GO:GO:0001105 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 GO:GO:0071778
GeneTree:ENSGT00550000074659 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
OMA:PQEGMHQ GO:GO:0035887 IPI:IPI00464435
Ensembl:ENSRNOT00000016740 ArrayExpress:E9PTG1 Uniprot:E9PTG1
Length = 1597
Score = 834 (298.6 bits), Expect = 7.6e-80, Sum P(2) = 7.6e-80
Identities = 210/535 (39%), Positives = 294/535 (54%)
Query: 718 QTLKKDASEDELPRGKGDCQQSEIV---ALTEQPEE----LKGGALFPHQLEALNWLRKC 770
+T K+D ++ + QS A++E+ E+ L G L +QL+ L W+
Sbjct: 686 ETAKQDVDDEYSMQYSARGSQSYYTVAHAISERVEKQSALLINGTLKHYQLQGLEWMVSL 745
Query: 771 WHKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLSTMPNWLAEFALWAPN 830
++ + N ILADEMGLGKT+ A I+ L + P L++VPLST+ NW EF WAP+
Sbjct: 746 YNNNLNGILADEMGLGKTIQTIALITYLMEHKRLNGPYLIIVPLSTLSNWTYEFDKWAPS 805
Query: 831 LNVVEYHGC-AKARAIIRQYEWHASDPDNLNKKTSSYKFNVLLTTYEMILADSSHLRGVP 889
+ + Y G A R+++ Q S KFNVLLTTYE I+ D L +
Sbjct: 806 VVKISYKGTPAMRRSLVPQLR--------------SGKFNVLLTTYEYIIKDKHILAKIR 851
Query: 890 WEVLVVDEGHRXXXXX-XXXXXXXXXXXXQHRVLLTGTPLQNNIGEMYNLLNFLQPASFP 948
W+ ++VDEGHR R+LLTGTPLQN + E++ LLNFL P F
Sbjct: 852 WKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRILLTGTPLQNKLPELWALLNFLLPTIFK 911
Query: 949 SLSSFEEKFN----------DLTTTQKV---EELKKLVAPHMLRRLKKDAMQNIPPKTER 995
S S+FE+ FN DL + + L K++ P +LRRLKK+ +P K E
Sbjct: 912 SCSTFEQWFNAPFAMTGERVDLNEEETILIIRRLHKVLRPFLLRRLKKEVESQLPEKVEY 971
Query: 996 MVPVELSSIQAEYYRAMLTKNYQILRNI-----GKGVAQQSMLNIVMQLRKVCNHPYLIP 1050
++ ++S++Q YR M K + GKG A+ +++N +MQLRK+CNHPY+
Sbjct: 972 VIKCDMSALQKILYRHMQAKGILLTDGSEKDKKGKGGAK-TLMNTIMQLRKICNHPYMFQ 1030
Query: 1051 GTEPDSG-----SVEFLHEMRI-KASAKLTLLHSMLKVLYKEGHRVLIFSQMTKLLDILE 1104
E S ++ + +AS K LL +L L HRVL+F QMT L+ I+E
Sbjct: 1031 HIEESFAEHLGYSNGVINGAELYRASGKFELLDRILPKLRATNHRVLLFCQMTSLMTIME 1090
Query: 1105 DYLNIEFGPKTYERVDGSVSVGDRQAAITRFNQDKSR-FVFLLSTRSCGLGINLATADTV 1163
DY F Y R+DG+ DR A + +FN+ S+ F+FLLSTR+ GLG+NL ADTV
Sbjct: 1091 DYF--AFRNFLYLRLDGTTKSEDRAALLKKFNEPGSQYFIFLLSTRAGGLGLNLQAADTV 1148
Query: 1164 IIYDSDFNPHADIQAMNRAHRIGQSKRLLVYRLVVRASVEERILQLAKKKLMLDQ 1218
+I+DSD+NPH D+QA +RAHRIGQ + V RL SVEE+IL AK KL +DQ
Sbjct: 1149 VIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQ 1203
Score = 53 (23.7 bits), Expect = 7.6e-80, Sum P(2) = 7.6e-80
Identities = 22/76 (28%), Positives = 35/76 (46%)
Query: 232 SPTDSLADT--KFHPAEEVLPHSQVTKSEQNDEVPVEKHEKSSTNGSSGIKFVLAIGA-- 287
+P S D + +P EV P S +SE + E E E+ S+ + K +L +
Sbjct: 618 APKASQLDAWLEMNPGYEVAPRSDSEESESDYEE--EDEEEESSRQETEEKILLDPNSEE 675
Query: 288 -SERDRKRKPEVKDED 302
SE+D K+ E +D
Sbjct: 676 VSEKDAKQIIETAKQD 691
Score = 40 (19.1 bits), Expect = 9.4e-78, Sum P(3) = 9.4e-78
Identities = 13/60 (21%), Positives = 29/60 (48%)
Query: 509 ENAIDLLREDDKD-SDPVAVNGKVQDESAVSTEDLGERNDKMVVEDADVSLRDNEGLTVS 567
E+ D ED+++ S K+ + ++E++ E++ K ++E A + D + S
Sbjct: 644 ESESDYEEEDEEEESSRQETEEKILLDP--NSEEVSEKDAKQIIETAKQDVDDEYSMQYS 701
Score = 39 (18.8 bits), Expect = 9.4e-78, Sum P(3) = 9.4e-78
Identities = 7/19 (36%), Positives = 13/19 (68%)
Query: 289 ERDRKRKPEVKDEDSQKKL 307
E++R R+ +DE+ +KL
Sbjct: 506 EKERMRRLMAEDEEGYRKL 524
Score = 37 (18.1 bits), Expect = 1.9e-77, Sum P(3) = 1.9e-77
Identities = 11/50 (22%), Positives = 23/50 (46%)
Query: 532 QDESAVSTEDLGERNDKMVVEDADVSLRDNEGLTVSEIHITCESTDKDVD 581
+ ES ED E + + E+ + ++E ++ + E+ +DVD
Sbjct: 644 ESESDYEEEDEEEESSRQETEEKILLDPNSEEVSEKDAKQIIETAKQDVD 693
>UNIPROTKB|E2RKP4 [details] [associations]
symbol:SMARCA2 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0071778 "WINAC complex" evidence=IEA]
[GO:0071565 "nBAF complex" evidence=IEA] [GO:0071564 "npBAF
complex" evidence=IEA] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IEA] [GO:0044212
"transcription regulatory region DNA binding" evidence=IEA]
[GO:0035887 "aortic smooth muscle cell differentiation"
evidence=IEA] [GO:0030308 "negative regulation of cell growth"
evidence=IEA] [GO:0016514 "SWI/SNF complex" evidence=IEA]
[GO:0008285 "negative regulation of cell proliferation"
evidence=IEA] [GO:0001105 "RNA polymerase II transcription
coactivator activity" evidence=IEA] [GO:0000790 "nuclear chromatin"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] InterPro:IPR000330
InterPro:IPR001487 InterPro:IPR001650 InterPro:IPR006576
InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503 PROSITE:PS50014
PROSITE:PS51194 SMART:SM00297 SMART:SM00490 SMART:SM00592
SMART:SM00951 GO:GO:0005524 GO:GO:0045892 GO:GO:0008285
GO:GO:0030308 GO:GO:0045944 GO:GO:0044212 GO:GO:0045111
GO:GO:0000790 GO:GO:0071564 GO:GO:0016514 GO:GO:0071565
GO:GO:0004386 GO:GO:0001105 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370 PROSITE:PS00633
InterPro:IPR018359 GO:GO:0071778 GeneTree:ENSGT00550000074659
InterPro:IPR013999 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 SMART:SM00573 PROSITE:PS51204 GO:GO:0035887
EMBL:AAEX03000600 Ensembl:ENSCAFT00000003206 NextBio:20852013
Uniprot:E2RKP4
Length = 1556
Score = 834 (298.6 bits), Expect = 1.0e-79, Sum P(2) = 1.0e-79
Identities = 210/535 (39%), Positives = 294/535 (54%)
Query: 718 QTLKKDASEDELPRGKGDCQQSEIV---ALTEQPEE----LKGGALFPHQLEALNWLRKC 770
+T K+D ++ + QS A++E+ E+ L G L +QL+ L W+
Sbjct: 663 ETAKQDVDDEYSMQYSARGSQSYYTVAHAISERVEKQSALLINGTLKHYQLQGLEWMVSL 722
Query: 771 WHKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLSTMPNWLAEFALWAPN 830
++ + N ILADEMGLGKT+ A I+ L + P L++VPLST+ NW EF WAP+
Sbjct: 723 YNNNLNGILADEMGLGKTIQTIALITYLMEHKRLNGPYLIIVPLSTLSNWTYEFDKWAPS 782
Query: 831 LNVVEYHGC-AKARAIIRQYEWHASDPDNLNKKTSSYKFNVLLTTYEMILADSSHLRGVP 889
+ + Y G A R+++ Q S KFNVLLTTYE I+ D L +
Sbjct: 783 VVKISYKGTPAMRRSLVPQLR--------------SGKFNVLLTTYEYIIKDKHILAKIR 828
Query: 890 WEVLVVDEGHRXXXXX-XXXXXXXXXXXXQHRVLLTGTPLQNNIGEMYNLLNFLQPASFP 948
W+ ++VDEGHR R+LLTGTPLQN + E++ LLNFL P F
Sbjct: 829 WKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRILLTGTPLQNKLPELWALLNFLLPTIFK 888
Query: 949 SLSSFEEKFN----------DLTTTQKV---EELKKLVAPHMLRRLKKDAMQNIPPKTER 995
S S+FE+ FN DL + + L K++ P +LRRLKK+ +P K E
Sbjct: 889 SCSTFEQWFNAPFAMTGERVDLNEEETILIIRRLHKVLRPFLLRRLKKEVESQLPEKVEY 948
Query: 996 MVPVELSSIQAEYYRAMLTKNYQILRNI-----GKGVAQQSMLNIVMQLRKVCNHPYLIP 1050
++ ++S++Q YR M K + GKG A+ +++N +MQLRK+CNHPY+
Sbjct: 949 VIKCDMSALQKILYRHMQAKGILLTDGSEKDKKGKGGAK-TLMNTIMQLRKICNHPYMFQ 1007
Query: 1051 GTEPDSG-----SVEFLHEMRI-KASAKLTLLHSMLKVLYKEGHRVLIFSQMTKLLDILE 1104
E S ++ + +AS K LL +L L HRVL+F QMT L+ I+E
Sbjct: 1008 HIEESFAEHLGYSNGVINGAELYRASGKFELLDRILPKLRATNHRVLLFCQMTSLMTIME 1067
Query: 1105 DYLNIEFGPKTYERVDGSVSVGDRQAAITRFNQDKSR-FVFLLSTRSCGLGINLATADTV 1163
DY F Y R+DG+ DR A + +FN+ S+ F+FLLSTR+ GLG+NL ADTV
Sbjct: 1068 DYF--AFRNFLYLRLDGTTKSEDRAALLKKFNEPGSQYFIFLLSTRAGGLGLNLQAADTV 1125
Query: 1164 IIYDSDFNPHADIQAMNRAHRIGQSKRLLVYRLVVRASVEERILQLAKKKLMLDQ 1218
+I+DSD+NPH D+QA +RAHRIGQ + V RL SVEE+IL AK KL +DQ
Sbjct: 1126 VIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQ 1180
Score = 51 (23.0 bits), Expect = 1.0e-79, Sum P(2) = 1.0e-79
Identities = 33/138 (23%), Positives = 55/138 (39%)
Query: 171 RKRSNKGKSVLALGVKSLE---KSLDSSQVDVSCSTKPENTSAGVPVEGSSSCPNDDDEK 227
R+R K + + G +L + +D S K +T G + G P
Sbjct: 544 RRRKKKAEEIAEGGESALGPDGEPIDESSQMSDLPVKVTHTETGKVLFG----PEAPKAS 599
Query: 228 QLNASPTDSLADTKFHPAEEVLPHSQVTKSEQNDEVPVEKHEKSSTNGSSGIKFVLAIGA 287
QL+A + +P EV P S +S+ + E E E+ S+ + K +L +
Sbjct: 600 QLDAW-------LEMNPGYEVAPRSDSEESDSDYEE--EDEEEESSRQDTEEKILLDPNS 650
Query: 288 ---SERDRKRKPEVKDED 302
SE+D K+ E +D
Sbjct: 651 EEVSEKDAKQIIETAKQD 668
Score = 39 (18.8 bits), Expect = 9.1e-78, Sum P(3) = 9.1e-78
Identities = 7/19 (36%), Positives = 13/19 (68%)
Query: 289 ERDRKRKPEVKDEDSQKKL 307
E++R R+ +DE+ +KL
Sbjct: 483 EKERMRRLMAEDEEGYRKL 501
Score = 39 (18.8 bits), Expect = 9.1e-78, Sum P(3) = 9.1e-78
Identities = 7/30 (23%), Positives = 17/30 (56%)
Query: 538 STEDLGERNDKMVVEDADVSLRDNEGLTVS 567
++E++ E++ K ++E A + D + S
Sbjct: 649 NSEEVSEKDAKQIIETAKQDVDDEYSMQYS 678
>UNIPROTKB|J9P5P2 [details] [associations]
symbol:SMARCA2 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR006576 InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271
Pfam:PF00439 Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SMART:SM00592 SMART:SM00951 GO:GO:0005524 GO:GO:0005634
GO:GO:0006355 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 KO:K11647
GeneTree:ENSGT00550000074659 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
CTD:6595 OMA:PQEGMHQ EMBL:AAEX03000600 RefSeq:XP_850159.1
Ensembl:ENSCAFT00000046362 GeneID:476335 KEGG:cfa:476335
Uniprot:J9P5P2
Length = 1574
Score = 834 (298.6 bits), Expect = 1.1e-79, Sum P(2) = 1.1e-79
Identities = 210/535 (39%), Positives = 294/535 (54%)
Query: 718 QTLKKDASEDELPRGKGDCQQSEIV---ALTEQPEE----LKGGALFPHQLEALNWLRKC 770
+T K+D ++ + QS A++E+ E+ L G L +QL+ L W+
Sbjct: 663 ETAKQDVDDEYSMQYSARGSQSYYTVAHAISERVEKQSALLINGTLKHYQLQGLEWMVSL 722
Query: 771 WHKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLSTMPNWLAEFALWAPN 830
++ + N ILADEMGLGKT+ A I+ L + P L++VPLST+ NW EF WAP+
Sbjct: 723 YNNNLNGILADEMGLGKTIQTIALITYLMEHKRLNGPYLIIVPLSTLSNWTYEFDKWAPS 782
Query: 831 LNVVEYHGC-AKARAIIRQYEWHASDPDNLNKKTSSYKFNVLLTTYEMILADSSHLRGVP 889
+ + Y G A R+++ Q S KFNVLLTTYE I+ D L +
Sbjct: 783 VVKISYKGTPAMRRSLVPQLR--------------SGKFNVLLTTYEYIIKDKHILAKIR 828
Query: 890 WEVLVVDEGHRXXXXX-XXXXXXXXXXXXQHRVLLTGTPLQNNIGEMYNLLNFLQPASFP 948
W+ ++VDEGHR R+LLTGTPLQN + E++ LLNFL P F
Sbjct: 829 WKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRILLTGTPLQNKLPELWALLNFLLPTIFK 888
Query: 949 SLSSFEEKFN----------DLTTTQKV---EELKKLVAPHMLRRLKKDAMQNIPPKTER 995
S S+FE+ FN DL + + L K++ P +LRRLKK+ +P K E
Sbjct: 889 SCSTFEQWFNAPFAMTGERVDLNEEETILIIRRLHKVLRPFLLRRLKKEVESQLPEKVEY 948
Query: 996 MVPVELSSIQAEYYRAMLTKNYQILRNI-----GKGVAQQSMLNIVMQLRKVCNHPYLIP 1050
++ ++S++Q YR M K + GKG A+ +++N +MQLRK+CNHPY+
Sbjct: 949 VIKCDMSALQKILYRHMQAKGILLTDGSEKDKKGKGGAK-TLMNTIMQLRKICNHPYMFQ 1007
Query: 1051 GTEPDSG-----SVEFLHEMRI-KASAKLTLLHSMLKVLYKEGHRVLIFSQMTKLLDILE 1104
E S ++ + +AS K LL +L L HRVL+F QMT L+ I+E
Sbjct: 1008 HIEESFAEHLGYSNGVINGAELYRASGKFELLDRILPKLRATNHRVLLFCQMTSLMTIME 1067
Query: 1105 DYLNIEFGPKTYERVDGSVSVGDRQAAITRFNQDKSR-FVFLLSTRSCGLGINLATADTV 1163
DY F Y R+DG+ DR A + +FN+ S+ F+FLLSTR+ GLG+NL ADTV
Sbjct: 1068 DYF--AFRNFLYLRLDGTTKSEDRAALLKKFNEPGSQYFIFLLSTRAGGLGLNLQAADTV 1125
Query: 1164 IIYDSDFNPHADIQAMNRAHRIGQSKRLLVYRLVVRASVEERILQLAKKKLMLDQ 1218
+I+DSD+NPH D+QA +RAHRIGQ + V RL SVEE+IL AK KL +DQ
Sbjct: 1126 VIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQ 1180
Score = 51 (23.0 bits), Expect = 1.1e-79, Sum P(2) = 1.1e-79
Identities = 33/138 (23%), Positives = 55/138 (39%)
Query: 171 RKRSNKGKSVLALGVKSLE---KSLDSSQVDVSCSTKPENTSAGVPVEGSSSCPNDDDEK 227
R+R K + + G +L + +D S K +T G + G P
Sbjct: 544 RRRKKKAEEIAEGGESALGPDGEPIDESSQMSDLPVKVTHTETGKVLFG----PEAPKAS 599
Query: 228 QLNASPTDSLADTKFHPAEEVLPHSQVTKSEQNDEVPVEKHEKSSTNGSSGIKFVLAIGA 287
QL+A + +P EV P S +S+ + E E E+ S+ + K +L +
Sbjct: 600 QLDAW-------LEMNPGYEVAPRSDSEESDSDYEE--EDEEEESSRQDTEEKILLDPNS 650
Query: 288 ---SERDRKRKPEVKDED 302
SE+D K+ E +D
Sbjct: 651 EEVSEKDAKQIIETAKQD 668
Score = 39 (18.8 bits), Expect = 1.0e-77, Sum P(3) = 1.0e-77
Identities = 7/19 (36%), Positives = 13/19 (68%)
Query: 289 ERDRKRKPEVKDEDSQKKL 307
E++R R+ +DE+ +KL
Sbjct: 483 EKERMRRLMAEDEEGYRKL 501
Score = 39 (18.8 bits), Expect = 1.0e-77, Sum P(3) = 1.0e-77
Identities = 7/30 (23%), Positives = 17/30 (56%)
Query: 538 STEDLGERNDKMVVEDADVSLRDNEGLTVS 567
++E++ E++ K ++E A + D + S
Sbjct: 649 NSEEVSEKDAKQIIETAKQDVDDEYSMQYS 678
>UNIPROTKB|A5PKK5 [details] [associations]
symbol:SMARCA2 "SMARCA2 protein" species:9913 "Bos taurus"
[GO:0071778 "WINAC complex" evidence=IEA] [GO:0071565 "nBAF
complex" evidence=IEA] [GO:0071564 "npBAF complex" evidence=IEA]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0045111 "intermediate filament cytoskeleton"
evidence=IEA] [GO:0044212 "transcription regulatory region DNA
binding" evidence=IEA] [GO:0035887 "aortic smooth muscle cell
differentiation" evidence=IEA] [GO:0030308 "negative regulation of
cell growth" evidence=IEA] [GO:0016514 "SWI/SNF complex"
evidence=IEA] [GO:0008285 "negative regulation of cell
proliferation" evidence=IEA] [GO:0001105 "RNA polymerase II
transcription coactivator activity" evidence=IEA] [GO:0000790
"nuclear chromatin" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR006576 InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271
Pfam:PF00439 Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SMART:SM00592 SMART:SM00951 GO:GO:0005524 GO:GO:0045892
GO:GO:0008285 GO:GO:0030308 GO:GO:0045944 GO:GO:0044212
GO:GO:0045111 GO:GO:0000790 GO:GO:0071564 GO:GO:0016514
GO:GO:0071565 GO:GO:0004386 GO:GO:0001105 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10
SUPFAM:SSF47370 PROSITE:PS00633 InterPro:IPR018359 GO:GO:0071778
KO:K11647 GeneTree:ENSGT00550000074659 InterPro:IPR013999
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 SMART:SM00573
PROSITE:PS51204 CTD:6595 HOGENOM:HOG000172363 HOVERGEN:HBG056636
OMA:PQEGMHQ GO:GO:0035887 OrthoDB:EOG418BMJ EMBL:DAAA02022747
EMBL:DAAA02022748 EMBL:DAAA02022749 EMBL:BC142521 IPI:IPI00854472
RefSeq:NP_001092585.1 UniGene:Bt.63204 SMR:A5PKK5 STRING:A5PKK5
Ensembl:ENSBTAT00000035681 GeneID:540904 KEGG:bta:540904
InParanoid:A5PKK5 NextBio:20878906 Uniprot:A5PKK5
Length = 1554
Score = 834 (298.6 bits), Expect = 1.3e-79, Sum P(2) = 1.3e-79
Identities = 210/535 (39%), Positives = 294/535 (54%)
Query: 718 QTLKKDASEDELPRGKGDCQQSEIV---ALTEQPEE----LKGGALFPHQLEALNWLRKC 770
+T K+D ++ + QS A++E+ E+ L G L +QL+ L W+
Sbjct: 661 ETAKQDVDDEYSMQYSARGSQSYYTVAHAISERVEKQSALLINGTLKHYQLQGLEWMVSL 720
Query: 771 WHKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLSTMPNWLAEFALWAPN 830
++ + N ILADEMGLGKT+ A I+ L + P L++VPLST+ NW EF WAP+
Sbjct: 721 YNNNLNGILADEMGLGKTIQTIALITYLMEHKRLNGPYLIIVPLSTLSNWTYEFDKWAPS 780
Query: 831 LNVVEYHGC-AKARAIIRQYEWHASDPDNLNKKTSSYKFNVLLTTYEMILADSSHLRGVP 889
+ + Y G A R+++ Q S KFNVLLTTYE I+ D L +
Sbjct: 781 VVKISYKGTPAMRRSLVPQLR--------------SGKFNVLLTTYEYIIKDKHILAKIR 826
Query: 890 WEVLVVDEGHRXXXXX-XXXXXXXXXXXXQHRVLLTGTPLQNNIGEMYNLLNFLQPASFP 948
W+ ++VDEGHR R+LLTGTPLQN + E++ LLNFL P F
Sbjct: 827 WKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRILLTGTPLQNKLPELWALLNFLLPTIFK 886
Query: 949 SLSSFEEKFN----------DLTTTQKV---EELKKLVAPHMLRRLKKDAMQNIPPKTER 995
S S+FE+ FN DL + + L K++ P +LRRLKK+ +P K E
Sbjct: 887 SCSTFEQWFNAPFAMTGERVDLNEEETILIIRRLHKVLRPFLLRRLKKEVESQLPEKVEY 946
Query: 996 MVPVELSSIQAEYYRAMLTKNYQILRNI-----GKGVAQQSMLNIVMQLRKVCNHPYLIP 1050
++ ++S++Q YR M K + GKG A+ +++N +MQLRK+CNHPY+
Sbjct: 947 VIKCDMSALQKILYRHMQAKGILLTDGSEKDKKGKGGAK-TLMNTIMQLRKICNHPYMFQ 1005
Query: 1051 GTEPDSG-----SVEFLHEMRI-KASAKLTLLHSMLKVLYKEGHRVLIFSQMTKLLDILE 1104
E S ++ + +AS K LL +L L HRVL+F QMT L+ I+E
Sbjct: 1006 HIEESFAEHLGYSNGVINGAELYRASGKFELLDRILPKLRATNHRVLLFCQMTSLMTIME 1065
Query: 1105 DYLNIEFGPKTYERVDGSVSVGDRQAAITRFNQDKSR-FVFLLSTRSCGLGINLATADTV 1163
DY F Y R+DG+ DR A + +FN+ S+ F+FLLSTR+ GLG+NL ADTV
Sbjct: 1066 DYF--AFRNFLYLRLDGTTKSEDRAALLKKFNEPGSQYFIFLLSTRAGGLGLNLQAADTV 1123
Query: 1164 IIYDSDFNPHADIQAMNRAHRIGQSKRLLVYRLVVRASVEERILQLAKKKLMLDQ 1218
+I+DSD+NPH D+QA +RAHRIGQ + V RL SVEE+IL AK KL +DQ
Sbjct: 1124 VIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQ 1178
Score = 50 (22.7 bits), Expect = 1.3e-79, Sum P(2) = 1.3e-79
Identities = 21/76 (27%), Positives = 35/76 (46%)
Query: 232 SPTDSLADT--KFHPAEEVLPHSQVTKSEQNDEVPVEKHEKSSTNGSSGIKFVLAIGA-- 287
+P S D + +P EV P S +S+ + E E E+ S+ + K +L +
Sbjct: 593 APKASQLDAWLEMNPGYEVAPRSDSEESDSDYEE--EDEEEESSRQETEEKILLDPNSEE 650
Query: 288 -SERDRKRKPEVKDED 302
SE+D K+ E +D
Sbjct: 651 VSEKDAKQIIETAKQD 666
Score = 39 (18.8 bits), Expect = 9.0e-78, Sum P(3) = 9.0e-78
Identities = 7/19 (36%), Positives = 13/19 (68%)
Query: 289 ERDRKRKPEVKDEDSQKKL 307
E++R R+ +DE+ +KL
Sbjct: 481 EKERMRRLMAEDEEGYRKL 499
Score = 39 (18.8 bits), Expect = 9.0e-78, Sum P(3) = 9.0e-78
Identities = 7/30 (23%), Positives = 17/30 (56%)
Query: 538 STEDLGERNDKMVVEDADVSLRDNEGLTVS 567
++E++ E++ K ++E A + D + S
Sbjct: 647 NSEEVSEKDAKQIIETAKQDVDDEYSMQYS 676
>UNIPROTKB|F1SJG5 [details] [associations]
symbol:SMARCA2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071778 "WINAC complex" evidence=IEA] [GO:0071565 "nBAF
complex" evidence=IEA] [GO:0071564 "npBAF complex" evidence=IEA]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0045111 "intermediate filament cytoskeleton"
evidence=IEA] [GO:0044212 "transcription regulatory region DNA
binding" evidence=IEA] [GO:0035887 "aortic smooth muscle cell
differentiation" evidence=IEA] [GO:0030308 "negative regulation of
cell growth" evidence=IEA] [GO:0016514 "SWI/SNF complex"
evidence=IEA] [GO:0008285 "negative regulation of cell
proliferation" evidence=IEA] [GO:0001105 "RNA polymerase II
transcription coactivator activity" evidence=IEA] [GO:0000790
"nuclear chromatin" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR006576 InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271
Pfam:PF00439 Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SMART:SM00592 SMART:SM00951 GO:GO:0005524 GO:GO:0045892
GO:GO:0008285 GO:GO:0030308 GO:GO:0045944 GO:GO:0044212
GO:GO:0045111 GO:GO:0000790 GO:GO:0071564 GO:GO:0016514
GO:GO:0071565 GO:GO:0004386 GO:GO:0001105 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 GO:GO:0071778
GeneTree:ENSGT00550000074659 OMA:PQEGMHQ GO:GO:0035887
EMBL:CT998562 EMBL:CU062411 Ensembl:ENSSSCT00000005766
Uniprot:F1SJG5
Length = 1556
Score = 834 (298.6 bits), Expect = 1.3e-79, Sum P(2) = 1.3e-79
Identities = 210/535 (39%), Positives = 294/535 (54%)
Query: 718 QTLKKDASEDELPRGKGDCQQSEIV---ALTEQPEE----LKGGALFPHQLEALNWLRKC 770
+T K+D ++ + QS A++E+ E+ L G L +QL+ L W+
Sbjct: 663 ETAKQDVDDEYSMQYSARGSQSYYTVAHAISERVEKQSALLINGTLKHYQLQGLEWMVSL 722
Query: 771 WHKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLSTMPNWLAEFALWAPN 830
++ + N ILADEMGLGKT+ A I+ L + P L++VPLST+ NW EF WAP+
Sbjct: 723 YNNNLNGILADEMGLGKTIQTIALITYLMEHKRLNGPYLIIVPLSTLSNWTYEFDKWAPS 782
Query: 831 LNVVEYHGC-AKARAIIRQYEWHASDPDNLNKKTSSYKFNVLLTTYEMILADSSHLRGVP 889
+ + Y G A R+++ Q S KFNVLLTTYE I+ D L +
Sbjct: 783 VVKISYKGTPAMRRSLVPQLR--------------SGKFNVLLTTYEYIIKDKHILAKIR 828
Query: 890 WEVLVVDEGHRXXXXX-XXXXXXXXXXXXQHRVLLTGTPLQNNIGEMYNLLNFLQPASFP 948
W+ ++VDEGHR R+LLTGTPLQN + E++ LLNFL P F
Sbjct: 829 WKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRILLTGTPLQNKLPELWALLNFLLPTIFK 888
Query: 949 SLSSFEEKFN----------DLTTTQKV---EELKKLVAPHMLRRLKKDAMQNIPPKTER 995
S S+FE+ FN DL + + L K++ P +LRRLKK+ +P K E
Sbjct: 889 SCSTFEQWFNAPFAMTGERVDLNEEETILIIRRLHKVLRPFLLRRLKKEVESQLPEKVEY 948
Query: 996 MVPVELSSIQAEYYRAMLTKNYQILRNI-----GKGVAQQSMLNIVMQLRKVCNHPYLIP 1050
++ ++S++Q YR M K + GKG A+ +++N +MQLRK+CNHPY+
Sbjct: 949 VIKCDMSALQKILYRHMQAKGILLTDGSEKDKKGKGGAK-TLMNTIMQLRKICNHPYMFQ 1007
Query: 1051 GTEPDSG-----SVEFLHEMRI-KASAKLTLLHSMLKVLYKEGHRVLIFSQMTKLLDILE 1104
E S ++ + +AS K LL +L L HRVL+F QMT L+ I+E
Sbjct: 1008 HIEESFAEHLGYSNGVINGAELYRASGKFELLDRILPKLRATNHRVLLFCQMTSLMTIME 1067
Query: 1105 DYLNIEFGPKTYERVDGSVSVGDRQAAITRFNQDKSR-FVFLLSTRSCGLGINLATADTV 1163
DY F Y R+DG+ DR A + +FN+ S+ F+FLLSTR+ GLG+NL ADTV
Sbjct: 1068 DYF--AFRNFLYLRLDGTTKSEDRAALLKKFNEPGSQYFIFLLSTRAGGLGLNLQAADTV 1125
Query: 1164 IIYDSDFNPHADIQAMNRAHRIGQSKRLLVYRLVVRASVEERILQLAKKKLMLDQ 1218
+I+DSD+NPH D+QA +RAHRIGQ + V RL SVEE+IL AK KL +DQ
Sbjct: 1126 VIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQ 1180
Score = 50 (22.7 bits), Expect = 1.3e-79, Sum P(2) = 1.3e-79
Identities = 21/76 (27%), Positives = 35/76 (46%)
Query: 232 SPTDSLADT--KFHPAEEVLPHSQVTKSEQNDEVPVEKHEKSSTNGSSGIKFVLAIGA-- 287
+P S D + +P EV P S +S+ + E E E+ S+ + K +L +
Sbjct: 595 APKASQLDAWLEMNPGYEVAPRSDSEESDSDYEE--EDEEEESSRQETEEKILLDPNSEE 652
Query: 288 -SERDRKRKPEVKDED 302
SE+D K+ E +D
Sbjct: 653 VSEKDAKQIIETAKQD 668
Score = 39 (18.8 bits), Expect = 1.9e-78, Sum P(2) = 1.9e-78
Identities = 7/30 (23%), Positives = 17/30 (56%)
Query: 538 STEDLGERNDKMVVEDADVSLRDNEGLTVS 567
++E++ E++ K ++E A + D + S
Sbjct: 649 NSEEVSEKDAKQIIETAKQDVDDEYSMQYS 678
>UNIPROTKB|P51531 [details] [associations]
symbol:SMARCA2 "Probable global transcription activator
SNF2L2" species:9606 "Homo sapiens" [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0007399
"nervous system development" evidence=IEA] [GO:0008285 "negative
regulation of cell proliferation" evidence=IEA] [GO:0035887 "aortic
smooth muscle cell differentiation" evidence=IEA] [GO:0016514
"SWI/SNF complex" evidence=IDA] [GO:0071564 "npBAF complex"
evidence=ISS] [GO:0071565 "nBAF complex" evidence=ISS] [GO:0005515
"protein binding" evidence=IPI] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=IMP;IDA] [GO:0001105 "RNA
polymerase II transcription coactivator activity" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0044212 "transcription
regulatory region DNA binding" evidence=IDA] [GO:0003713
"transcription coactivator activity" evidence=TAS] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IDA;TAS] [GO:0071778 "WINAC
complex" evidence=IDA] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=IDA] [GO:0000790 "nuclear
chromatin" evidence=IDA] [GO:0030308 "negative regulation of cell
growth" evidence=IMP] [GO:0006338 "chromatin remodeling"
evidence=TAS] [GO:0008094 "DNA-dependent ATPase activity"
evidence=TAS] [GO:0000122 "negative regulation of transcription
from RNA polymerase II promoter" evidence=TAS] [GO:0005730
"nucleolus" evidence=IDA] [GO:0043231 "intracellular
membrane-bounded organelle" evidence=IDA] [GO:0045111 "intermediate
filament cytoskeleton" evidence=IDA] InterPro:IPR000330
InterPro:IPR001487 InterPro:IPR001650 InterPro:IPR006576
InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503 PROSITE:PS50014
PROSITE:PS51194 SMART:SM00297 SMART:SM00490 SMART:SM00592
SMART:SM00951 GO:GO:0005524 GO:GO:0008285 GO:GO:0007399
GO:GO:0005654 GO:GO:0030308 GO:GO:0006338 GO:GO:0000122
GO:GO:0044212 GO:GO:0045111 GO:GO:0000790 GO:GO:0071564
GO:GO:0016514 GO:GO:0071565 EMBL:CH471071 GO:GO:0004386
Pathway_Interaction_DB:ar_tf_pathway GO:GO:0001105 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10
SUPFAM:SSF47370 PROSITE:PS00633 InterPro:IPR018359 GO:GO:0071778
KO:K11647 ChiTaRS:SMARCA2 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
GO:GO:0008094 EMBL:X72889 EMBL:D26155 EMBL:AL359076 EMBL:AL138755
IPI:IPI00386718 IPI:IPI00514648 PIR:S39580 PIR:S45251
RefSeq:NP_003061.3 RefSeq:NP_620614.2 UniGene:Hs.298990 PDB:2DAT
PDBsum:2DAT ProteinModelPortal:P51531 SMR:P51531 DIP:DIP-29005N
IntAct:P51531 MINT:MINT-1898892 STRING:P51531 PhosphoSite:P51531
DMDM:212276472 PaxDb:P51531 PRIDE:P51531 DNASU:6595
Ensembl:ENST00000349721 Ensembl:ENST00000357248
Ensembl:ENST00000382194 Ensembl:ENST00000382203 GeneID:6595
KEGG:hsa:6595 UCSC:uc003zhc.3 UCSC:uc003zhd.3 CTD:6595
GeneCards:GC09P002005 HGNC:HGNC:11098 HPA:HPA029981 MIM:600014
MIM:601358 neXtProt:NX_P51531 Orphanet:3051 PharmGKB:PA35948
HOGENOM:HOG000172363 HOVERGEN:HBG056636 InParanoid:P51531
OMA:PQEGMHQ PhylomeDB:P51531 EvolutionaryTrace:P51531
GenomeRNAi:6595 NextBio:25649 PMAP-CutDB:P51531 ArrayExpress:P51531
Bgee:P51531 CleanEx:HS_SMARCA2 Genevestigator:P51531
GermOnline:ENSG00000080503 GO:GO:0035887 Uniprot:P51531
Length = 1590
Score = 834 (298.6 bits), Expect = 1.5e-79, Sum P(2) = 1.5e-79
Identities = 210/535 (39%), Positives = 294/535 (54%)
Query: 718 QTLKKDASEDELPRGKGDCQQSEIV---ALTEQPEE----LKGGALFPHQLEALNWLRKC 770
+T K+D ++ + QS A++E+ E+ L G L +QL+ L W+
Sbjct: 679 ETAKQDVDDEYSMQYSARGSQSYYTVAHAISERVEKQSALLINGTLKHYQLQGLEWMVSL 738
Query: 771 WHKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLSTMPNWLAEFALWAPN 830
++ + N ILADEMGLGKT+ A I+ L + P L++VPLST+ NW EF WAP+
Sbjct: 739 YNNNLNGILADEMGLGKTIQTIALITYLMEHKRLNGPYLIIVPLSTLSNWTYEFDKWAPS 798
Query: 831 LNVVEYHGC-AKARAIIRQYEWHASDPDNLNKKTSSYKFNVLLTTYEMILADSSHLRGVP 889
+ + Y G A R+++ Q S KFNVLLTTYE I+ D L +
Sbjct: 799 VVKISYKGTPAMRRSLVPQLR--------------SGKFNVLLTTYEYIIKDKHILAKIR 844
Query: 890 WEVLVVDEGHRXXXXX-XXXXXXXXXXXXQHRVLLTGTPLQNNIGEMYNLLNFLQPASFP 948
W+ ++VDEGHR R+LLTGTPLQN + E++ LLNFL P F
Sbjct: 845 WKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRILLTGTPLQNKLPELWALLNFLLPTIFK 904
Query: 949 SLSSFEEKFN----------DLTTTQKV---EELKKLVAPHMLRRLKKDAMQNIPPKTER 995
S S+FE+ FN DL + + L K++ P +LRRLKK+ +P K E
Sbjct: 905 SCSTFEQWFNAPFAMTGERVDLNEEETILIIRRLHKVLRPFLLRRLKKEVESQLPEKVEY 964
Query: 996 MVPVELSSIQAEYYRAMLTKNYQILRNI-----GKGVAQQSMLNIVMQLRKVCNHPYLIP 1050
++ ++S++Q YR M K + GKG A+ +++N +MQLRK+CNHPY+
Sbjct: 965 VIKCDMSALQKILYRHMQAKGILLTDGSEKDKKGKGGAK-TLMNTIMQLRKICNHPYMFQ 1023
Query: 1051 GTEPDSG-----SVEFLHEMRI-KASAKLTLLHSMLKVLYKEGHRVLIFSQMTKLLDILE 1104
E S ++ + +AS K LL +L L HRVL+F QMT L+ I+E
Sbjct: 1024 HIEESFAEHLGYSNGVINGAELYRASGKFELLDRILPKLRATNHRVLLFCQMTSLMTIME 1083
Query: 1105 DYLNIEFGPKTYERVDGSVSVGDRQAAITRFNQDKSR-FVFLLSTRSCGLGINLATADTV 1163
DY F Y R+DG+ DR A + +FN+ S+ F+FLLSTR+ GLG+NL ADTV
Sbjct: 1084 DYF--AFRNFLYLRLDGTTKSEDRAALLKKFNEPGSQYFIFLLSTRAGGLGLNLQAADTV 1141
Query: 1164 IIYDSDFNPHADIQAMNRAHRIGQSKRLLVYRLVVRASVEERILQLAKKKLMLDQ 1218
+I+DSD+NPH D+QA +RAHRIGQ + V RL SVEE+IL AK KL +DQ
Sbjct: 1142 VIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQ 1196
Score = 50 (22.7 bits), Expect = 1.5e-79, Sum P(2) = 1.5e-79
Identities = 21/76 (27%), Positives = 35/76 (46%)
Query: 232 SPTDSLADT--KFHPAEEVLPHSQVTKSEQNDEVPVEKHEKSSTNGSSGIKFVLAIGA-- 287
+P S D + +P EV P S +S+ + E E E+ S+ + K +L +
Sbjct: 611 APKASQLDAWLEMNPGYEVAPRSDSEESDSDYEE--EDEEEESSRQETEEKILLDPNSEE 668
Query: 288 -SERDRKRKPEVKDED 302
SE+D K+ E +D
Sbjct: 669 VSEKDAKQIIETAKQD 684
Score = 39 (18.8 bits), Expect = 1.1e-77, Sum P(3) = 1.1e-77
Identities = 7/19 (36%), Positives = 13/19 (68%)
Query: 289 ERDRKRKPEVKDEDSQKKL 307
E++R R+ +DE+ +KL
Sbjct: 499 EKERMRRLMAEDEEGYRKL 517
Score = 39 (18.8 bits), Expect = 1.1e-77, Sum P(3) = 1.1e-77
Identities = 7/30 (23%), Positives = 17/30 (56%)
Query: 538 STEDLGERNDKMVVEDADVSLRDNEGLTVS 567
++E++ E++ K ++E A + D + S
Sbjct: 665 NSEEVSEKDAKQIIETAKQDVDDEYSMQYS 694
>UNIPROTKB|E2QW28 [details] [associations]
symbol:HELLS "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 OMA:ETFYTAI
GeneTree:ENSGT00550000075106 EMBL:AAEX03015428
Ensembl:ENSCAFT00000012889 Uniprot:E2QW28
Length = 839
Score = 446 (162.1 bits), Expect = 3.5e-79, Sum P(4) = 3.5e-79
Identities = 100/241 (41%), Positives = 150/241 (62%)
Query: 986 MQNIPPKTERMVPVELSSIQAEYYRAMLTKNYQILRNIGKGVAQQSMLNIVMQLRKVCNH 1045
+ + P + E+++ + E RA++ N + + + NI+M LRK CNH
Sbjct: 522 IDDFPNELEKLISQMQPEVDRE--RAVVETNIPVESEVNL-----KLQNIMMLLRKCCNH 574
Query: 1046 PYLIPGTEP-DSGSVEF-LHEMRIKASAKLTLLHSMLKVLYKEGHRVLIFSQMTKLLDIL 1103
PYLI P D + EF + E + S K +L ML L GH+VL+FSQMT++LDIL
Sbjct: 575 PYLIE--YPIDPVTQEFKIDEELVTNSGKFLILDRMLPELKARGHKVLLFSQMTRMLDIL 632
Query: 1104 EDYLNIEFGPKTYERVDGSVSVGDRQAAITRFNQDKSRFVFLLSTRSCGLGINLATADTV 1163
DY + F + R+DGS+S +R+ + FN D F+FL+STR+ GLGINL ADTV
Sbjct: 633 MDYCH--FRNFNFSRLDGSMSYSEREKNMHSFNTDPDVFIFLVSTRAGGLGINLTAADTV 690
Query: 1164 IIYDSDFNPHADIQAMNRAHRIGQSKRLLVYRLVVRASVEERILQLAKKKLMLDQLFVNK 1223
IIYDSD+NP +D+QA +R HRIGQ+K ++VYRLV +++++I++ A K L++L ++K
Sbjct: 691 IIYDSDWNPQSDLQAQDRCHRIGQTKPVVVYRLVTANTIDQKIVERAAAKRKLEKLIIHK 750
Query: 1224 S 1224
+
Sbjct: 751 N 751
Score = 435 (158.2 bits), Expect = 3.5e-79, Sum P(4) = 3.5e-79
Identities = 103/285 (36%), Positives = 156/285 (54%)
Query: 746 EQPEELKGGALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKAK 805
+QP+ GG + +Q+E + WLR W N ILADEMGLGKTV A I+ L +
Sbjct: 214 QQPKHFTGGVMRWYQVEGMEWLRMLWENGINGILADEMGLGKTVQCIATIA-LMIQRGVP 272
Query: 806 LPCLVLVPLSTMPNWLAEFALWAPNLNVVEYHGCAKARAIIRQYEWHASDPDNLNKKTSS 865
P LV PLST+PNW+AEF + P++ + YHG + R + + N++K+ +
Sbjct: 273 GPFLVCGPLSTLPNWMAEFQRFTPDIPTMLYHGTQQERRKLVK---------NIHKRKGT 323
Query: 866 YKFN-VLLTTYEMILADSSHLRGVPWEVLVVDEGHRXXXXXXXXXXXXXXXXXQHRVLLT 924
+ + V++T++E+ + D + L+ W+ L+VDEGHR +++LLT
Sbjct: 324 LQIHPVVITSFEIAMRDRNALQHCYWKYLIVDEGHRIKNMKCRLIRELKRFNADNKLLLT 383
Query: 925 GTPLQNNIGEMYNLLNFLQPASFPSLSSFEEKFNDLTTTQKVEE--------------LK 970
GTPLQNN+ E+++LLNFL P F L SFE F D+T+ + E L
Sbjct: 384 GTPLQNNLSELWSLLNFLLPDVFDDLKSFESWF-DITSLSETAEDIIAKEREQNVLHMLH 442
Query: 971 KLVAPHMLRRLKKDAMQNIPPKTERMVPVELSSIQAEYYRAMLTK 1015
+++ P +LRRLK D +PPK E +V LS Q +Y A++ +
Sbjct: 443 QILTPFLLRRLKSDVALEVPPKREVVVYAPLSKKQEIFYTAIVNR 487
Score = 52 (23.4 bits), Expect = 3.5e-79, Sum P(4) = 3.5e-79
Identities = 24/100 (24%), Positives = 46/100 (46%)
Query: 118 KCTQKNDQLKPISNLDSISKRARSKIITIKSQSGVKSSGADKVSQIFGNS-ILA----RK 172
K +K + LK +SI + ++T K + + + ++++ IL+ K
Sbjct: 99 KLERKKETLKVTKGKNSIGASEENPVVTRKKRG--REDESYNIAEVMSKEEILSVAKKNK 156
Query: 173 RSNKGK--SVLALGVKSLEKSLDSSQV--DVSCSTKPENT 208
+ N+ K S L V+ L+K+ DS+ + D T +NT
Sbjct: 157 KENEQKESSSSNLCVEDLQKNKDSNSIIKDRLSQTVRQNT 196
Score = 47 (21.6 bits), Expect = 1.2e-78, Sum P(4) = 1.2e-78
Identities = 17/71 (23%), Positives = 35/71 (49%)
Query: 145 TIKSQSGVKSSGADKVSQIFGNSILARKRSNKGKSVLALGVKSLEKSLDSSQVDVSCSTK 204
T+K G S GA + + + + +KR + +S V S E+ L ++ + + +
Sbjct: 106 TLKVTKGKNSIGASEENPV----VTRKKRGREDESYNIAEVMSKEEILSVAKKNKKENEQ 161
Query: 205 PENTSAGVPVE 215
E++S+ + VE
Sbjct: 162 KESSSSNLCVE 172
Score = 44 (20.5 bits), Expect = 3.5e-79, Sum P(4) = 3.5e-79
Identities = 16/54 (29%), Positives = 28/54 (51%)
Query: 1288 EGSTKIVWDENAIARLLDRSNLQSGSTDLAEGDLENDMLGSVKATEWNEETTED 1341
+GS + V + + LLDRS+L A G ++ M G K E +E+++ +
Sbjct: 786 KGSREKVISDKDLELLLDRSDLIDQMN--ASGPIKEKM-GIFKILENSEDSSPE 836
Score = 40 (19.1 bits), Expect = 6.3e-78, Sum P(4) = 6.3e-78
Identities = 11/40 (27%), Positives = 22/40 (55%)
Query: 334 SKLHEKQRTNNDEVSASLCEVDVGTKGLDAQR--KDELAE 371
+K ++K+ + S++LC D+ K D+ KD L++
Sbjct: 152 AKKNKKENEQKESSSSNLCVEDL-QKNKDSNSIIKDRLSQ 190
>UNIPROTKB|E1C2F7 [details] [associations]
symbol:E1C2F7 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000790 "nuclear
chromatin" evidence=IEA] [GO:0001105 "RNA polymerase II
transcription coactivator activity" evidence=IEA] [GO:0008285
"negative regulation of cell proliferation" evidence=IEA]
[GO:0016514 "SWI/SNF complex" evidence=IEA] [GO:0030308 "negative
regulation of cell growth" evidence=IEA] [GO:0035887 "aortic smooth
muscle cell differentiation" evidence=IEA] [GO:0044212
"transcription regulatory region DNA binding" evidence=IEA]
[GO:0045111 "intermediate filament cytoskeleton" evidence=IEA]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0071564 "npBAF complex" evidence=IEA] [GO:0071565
"nBAF complex" evidence=IEA] [GO:0071778 "WINAC complex"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 InterPro:IPR006576 InterPro:IPR014978
Pfam:PF00176 Pfam:PF00271 Pfam:PF00439 Pfam:PF07533 Pfam:PF08880
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 SMART:SM00592 SMART:SM00951 GO:GO:0005524
GO:GO:0045892 GO:GO:0008285 GO:GO:0030308 GO:GO:0045944
GO:GO:0044212 GO:GO:0045111 GO:GO:0000790 GO:GO:0071564
GO:GO:0016514 GO:GO:0071565 GO:GO:0004386 GO:GO:0001105
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10
SUPFAM:SSF47370 PROSITE:PS00633 InterPro:IPR018359 GO:GO:0071778
GeneTree:ENSGT00550000074659 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
OMA:PQEGMHQ EMBL:AADN02068434 EMBL:AADN02068435 EMBL:AADN02068436
EMBL:AADN02068437 EMBL:AADN02068438 EMBL:AADN02068439
EMBL:AADN02068440 EMBL:AADN02068441 IPI:IPI00583413
Ensembl:ENSGALT00000016528 Uniprot:E1C2F7
Length = 1546
Score = 839 (300.4 bits), Expect = 4.0e-79, Sum P(3) = 4.0e-79
Identities = 212/535 (39%), Positives = 294/535 (54%)
Query: 718 QTLKKDASEDELPRGKGDCQQSEIV---ALTEQPEE----LKGGALFPHQLEALNWLRKC 770
+T K+D ++ + QS A+TE+ E+ L G L +QL+ L W+
Sbjct: 653 ETAKQDVDDEYSMQYSARGSQSYYTVAHAITERVEKQSSLLINGTLKHYQLQGLEWMVSL 712
Query: 771 WHKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLSTMPNWLAEFALWAPN 830
++ + N ILADEMGLGKT+ A I+ L + P L++VPLST+ NW EF WAP+
Sbjct: 713 YNNNLNGILADEMGLGKTIQTIALITYLMEHKRLNGPYLIIVPLSTLSNWTYEFDKWAPS 772
Query: 831 LNVVEYHGC-AKARAIIRQYEWHASDPDNLNKKTSSYKFNVLLTTYEMILADSSHLRGVP 889
+ + Y G A R+++ Q S KFNVLLTTYE I+ D L +
Sbjct: 773 VVKISYKGTPAMRRSLVPQLR--------------SGKFNVLLTTYEYIIKDKHILAKIR 818
Query: 890 WEVLVVDEGHRXXXXX-XXXXXXXXXXXXQHRVLLTGTPLQNNIGEMYNLLNFLQPASFP 948
W+ ++VDEGHR R+LLTGTPLQN + E++ LLNFL P F
Sbjct: 819 WKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRILLTGTPLQNKLPELWALLNFLLPTIFK 878
Query: 949 SLSSFEEKFN----------DLTTTQKV---EELKKLVAPHMLRRLKKDAMQNIPPKTER 995
S S+FE+ FN DL + + L K++ P +LRRLKK+ +P K E
Sbjct: 879 SCSTFEQWFNAPFAMTGERVDLNEEETILIIRRLHKVLRPFLLRRLKKEVESQLPEKVEY 938
Query: 996 MVPVELSSIQAEYYRAMLTKNYQILRNI-----GKGVAQQSMLNIVMQLRKVCNHPYLIP 1050
++ ++S++Q YR M K + GKG A+ +++N +MQLRK+CNHPY+
Sbjct: 939 VIKCDMSALQKILYRHMQAKGILLTDGSEKDKKGKGGAK-TLMNTIMQLRKICNHPYMFQ 997
Query: 1051 GTEPDSG-----SVEFLHEMRI-KASAKLTLLHSMLKVLYKEGHRVLIFSQMTKLLDILE 1104
E S ++ + +AS K LL +L L HRVL+F QMT L+ I+E
Sbjct: 998 HIEESFAEHLGYSNGVINGAELYRASGKFELLDRILPKLRATNHRVLLFCQMTSLMTIME 1057
Query: 1105 DYLNIEFGPKTYERVDGSVSVGDRQAAITRFNQDKSR-FVFLLSTRSCGLGINLATADTV 1163
DY F Y R+DG+ DR A + +FN+ S+ F+FLLSTR+ GLG+NL ADTV
Sbjct: 1058 DYF--AFRNFLYLRLDGTTKSEDRAALLKKFNEPGSQYFIFLLSTRAGGLGLNLQAADTV 1115
Query: 1164 IIYDSDFNPHADIQAMNRAHRIGQSKRLLVYRLVVRASVEERILQLAKKKLMLDQ 1218
II+DSD+NPH D+QA +RAHRIGQ + V RL SVEE+IL AK KL +DQ
Sbjct: 1116 IIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQ 1170
Score = 46 (21.3 bits), Expect = 4.0e-79, Sum P(3) = 4.0e-79
Identities = 13/64 (20%), Positives = 33/64 (51%)
Query: 505 ECKGENAIDLLREDDKD-SDPVAVNGKVQDESAVSTEDLGERNDKMVVEDADVSLRDNEG 563
+ + E+ + EDD++ S + + K+ + ++E++ E++ K ++E A + D
Sbjct: 607 DSEDESGSEYEEEDDEEESSRLEADEKILLDP--NSEEVSEKDAKQIIETAKQDVDDEYS 664
Query: 564 LTVS 567
+ S
Sbjct: 665 MQYS 668
Score = 39 (18.8 bits), Expect = 4.0e-79, Sum P(3) = 4.0e-79
Identities = 7/19 (36%), Positives = 13/19 (68%)
Query: 289 ERDRKRKPEVKDEDSQKKL 307
E++R R+ +DE+ +KL
Sbjct: 472 EKERMRRLMAEDEEGYRKL 490
Score = 39 (18.8 bits), Expect = 2.2e-78, Sum P(3) = 2.2e-78
Identities = 15/59 (25%), Positives = 26/59 (44%)
Query: 525 VAVNGKVQDESAVSTEDLGERNDKMVVE-DADVSLRDN-EGLTVSEIHITCESTDKDVD 581
VA +DES E+ + + +E D + L N E ++ + E+ +DVD
Sbjct: 602 VAPRSDSEDESGSEYEEEDDEEESSRLEADEKILLDPNSEEVSEKDAKQIIETAKQDVD 660
>MGI|MGI:99603 [details] [associations]
symbol:Smarca2 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily a, member 2"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000790 "nuclear chromatin" evidence=ISO]
[GO:0001105 "RNA polymerase II transcription coactivator activity"
evidence=ISO] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0006325 "chromatin organization"
evidence=TAS] [GO:0006334 "nucleosome assembly" evidence=TAS]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0007399 "nervous system development"
evidence=IEA] [GO:0008285 "negative regulation of cell
proliferation" evidence=IMP] [GO:0016514 "SWI/SNF complex"
evidence=ISO;TAS] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0016817 "hydrolase activity, acting on acid anhydrides"
evidence=IEA] [GO:0016818 "hydrolase activity, acting on acid
anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0030308 "negative regulation of cell growth" evidence=ISO]
[GO:0035887 "aortic smooth muscle cell differentiation"
evidence=IMP] [GO:0044212 "transcription regulatory region DNA
binding" evidence=ISO] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=ISO] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=ISO]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=ISO] [GO:0071564 "npBAF complex"
evidence=IDA] [GO:0071565 "nBAF complex" evidence=IDA] [GO:0071778
"WINAC complex" evidence=ISO] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 InterPro:IPR006576 InterPro:IPR014978
Pfam:PF00176 Pfam:PF00271 Pfam:PF00439 Pfam:PF07533 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SMART:SM00592 SMART:SM00951 MGI:MGI:99603 GO:GO:0005524
GO:GO:0045892 GO:GO:0008285 GO:GO:0007399 GO:GO:0030308
GO:GO:0045944 GO:GO:0044212 GO:GO:0045111 GO:GO:0000790
GO:GO:0071564 GO:GO:0016514 GO:GO:0071565 GO:GO:0004386
GO:GO:0001105 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006334 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 GO:GO:0071778 KO:K11647
ChiTaRS:SMARCA2 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
CTD:6595 HOGENOM:HOG000172363 HOVERGEN:HBG056636 GO:GO:0035887
EMBL:BC075641 IPI:IPI01018407 RefSeq:NP_035546.2 UniGene:Mm.313303
ProteinModelPortal:Q6DIC0 SMR:Q6DIC0 DIP:DIP-48888N STRING:Q6DIC0
PhosphoSite:Q6DIC0 PaxDb:Q6DIC0 PRIDE:Q6DIC0 GeneID:67155
KEGG:mmu:67155 UCSC:uc008hbn.1 InParanoid:Q6DIC0 OrthoDB:EOG418BMJ
NextBio:323746 Bgee:Q6DIC0 Genevestigator:Q6DIC0 Uniprot:Q6DIC0
Length = 1577
Score = 834 (298.6 bits), Expect = 5.8e-79, Sum P(3) = 5.8e-79
Identities = 210/535 (39%), Positives = 294/535 (54%)
Query: 718 QTLKKDASEDELPRGKGDCQQSEIV---ALTEQPEE----LKGGALFPHQLEALNWLRKC 770
+T K+D ++ + QS A++E+ E+ L G L +QL+ L W+
Sbjct: 684 ETAKQDVDDEYSMQYSARGSQSYYTVAHAISERVEKQSALLINGTLKHYQLQGLEWMVSL 743
Query: 771 WHKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLSTMPNWLAEFALWAPN 830
++ + N ILADEMGLGKT+ A I+ L + P L++VPLST+ NW EF WAP+
Sbjct: 744 YNNNLNGILADEMGLGKTIQTIALITYLMEHKRLNGPYLIIVPLSTLSNWTYEFDKWAPS 803
Query: 831 LNVVEYHGC-AKARAIIRQYEWHASDPDNLNKKTSSYKFNVLLTTYEMILADSSHLRGVP 889
+ + Y G A R+++ Q S KFNVLLTTYE I+ D L +
Sbjct: 804 VVKISYKGTPAMRRSLVPQLR--------------SGKFNVLLTTYEYIIKDKHILAKIR 849
Query: 890 WEVLVVDEGHRXXXXX-XXXXXXXXXXXXQHRVLLTGTPLQNNIGEMYNLLNFLQPASFP 948
W+ ++VDEGHR R+LLTGTPLQN + E++ LLNFL P F
Sbjct: 850 WKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRILLTGTPLQNKLPELWALLNFLLPTIFK 909
Query: 949 SLSSFEEKFN----------DLTTTQKV---EELKKLVAPHMLRRLKKDAMQNIPPKTER 995
S S+FE+ FN DL + + L K++ P +LRRLKK+ +P K E
Sbjct: 910 SCSTFEQWFNAPFAMTGERVDLNEEETILIIRRLHKVLRPFLLRRLKKEVESQLPEKVEY 969
Query: 996 MVPVELSSIQAEYYRAMLTKNYQILRNI-----GKGVAQQSMLNIVMQLRKVCNHPYLIP 1050
++ ++S++Q YR M K + GKG A+ +++N +MQLRK+CNHPY+
Sbjct: 970 VIKCDMSALQKILYRHMQAKGILLTDGSEKDKKGKGGAK-TLMNTIMQLRKICNHPYMFQ 1028
Query: 1051 GTEPDSG-----SVEFLHEMRI-KASAKLTLLHSMLKVLYKEGHRVLIFSQMTKLLDILE 1104
E S ++ + +AS K LL +L L HRVL+F QMT L+ I+E
Sbjct: 1029 HIEESFAEHLGYSNGVINGAELYRASGKFELLDRILPKLRATNHRVLLFCQMTSLMTIME 1088
Query: 1105 DYLNIEFGPKTYERVDGSVSVGDRQAAITRFNQDKSR-FVFLLSTRSCGLGINLATADTV 1163
DY F Y R+DG+ DR A + +FN+ S+ F+FLLSTR+ GLG+NL ADTV
Sbjct: 1089 DYF--AFRNFLYLRLDGTTKSEDRAALLKKFNEPGSQYFIFLLSTRAGGLGLNLQAADTV 1146
Query: 1164 IIYDSDFNPHADIQAMNRAHRIGQSKRLLVYRLVVRASVEERILQLAKKKLMLDQ 1218
+I+DSD+NPH D+QA +RAHRIGQ + V RL SVEE+IL AK KL +DQ
Sbjct: 1147 VIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQ 1201
Score = 53 (23.7 bits), Expect = 5.8e-79, Sum P(3) = 5.8e-79
Identities = 22/76 (28%), Positives = 35/76 (46%)
Query: 232 SPTDSLADT--KFHPAEEVLPHSQVTKSEQNDEVPVEKHEKSSTNGSSGIKFVLAIGA-- 287
+P S D + +P EV P S +SE + E E E+ S+ + K +L +
Sbjct: 616 APKASQLDAWLEMNPGYEVAPRSDSEESESDYEE--EDEEEESSRQETEEKILLDPNSEE 673
Query: 288 -SERDRKRKPEVKDED 302
SE+D K+ E +D
Sbjct: 674 VSEKDAKQIIETAKQD 689
Score = 40 (19.1 bits), Expect = 2.6e-77, Sum P(4) = 2.6e-77
Identities = 13/60 (21%), Positives = 29/60 (48%)
Query: 509 ENAIDLLREDDKD-SDPVAVNGKVQDESAVSTEDLGERNDKMVVEDADVSLRDNEGLTVS 567
E+ D ED+++ S K+ + ++E++ E++ K ++E A + D + S
Sbjct: 642 ESESDYEEEDEEEESSRQETEEKILLDP--NSEEVSEKDAKQIIETAKQDVDDEYSMQYS 699
Score = 39 (18.8 bits), Expect = 2.6e-77, Sum P(4) = 2.6e-77
Identities = 7/19 (36%), Positives = 13/19 (68%)
Query: 289 ERDRKRKPEVKDEDSQKKL 307
E++R R+ +DE+ +KL
Sbjct: 504 EKERMRRLMAEDEEGYRKL 522
Score = 37 (18.1 bits), Expect = 5.8e-79, Sum P(3) = 5.8e-79
Identities = 18/59 (30%), Positives = 28/59 (47%)
Query: 1319 GDLEND-MLGSVKATEWNEETT---EDQ---------AESPVAAVDDASAENSERKEEN 1364
GDLE D ML A +N E + ED A +A +++ E++E +EE+
Sbjct: 1452 GDLEKDVMLLCHNAQTFNLEGSQIYEDSIVLQSVFKSARQKIAKEEESEEESNEEEEED 1510
Score = 37 (18.1 bits), Expect = 5.3e-77, Sum P(4) = 5.3e-77
Identities = 11/50 (22%), Positives = 23/50 (46%)
Query: 532 QDESAVSTEDLGERNDKMVVEDADVSLRDNEGLTVSEIHITCESTDKDVD 581
+ ES ED E + + E+ + ++E ++ + E+ +DVD
Sbjct: 642 ESESDYEEEDEEEESSRQETEEKILLDPNSEEVSEKDAKQIIETAKQDVD 691
>GENEDB_PFALCIPARUM|PFB0730w [details] [associations]
symbol:PFB0730w "DNA helicase, putative"
species:5833 "Plasmodium falciparum" [GO:0003678 "DNA helicase
activity" evidence=ISS] [GO:0006338 "chromatin remodeling"
evidence=ISS] [GO:0016514 "SWI/SNF complex" evidence=ISS]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003677
GO:GO:0006338 GO:GO:0016514 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0003678 KO:K11647 EMBL:AE001362 OMA:NENMNMS
PIR:F71607 RefSeq:XP_001349665.1 ProteinModelPortal:O96239
EnsemblProtists:PFB0730w:mRNA GeneID:812747 KEGG:pfa:PFB0730w
EuPathDB:PlasmoDB:PF3D7_0216000 Uniprot:O96239
Length = 1997
Score = 648 (233.2 bits), Expect = 7.6e-79, Sum P(4) = 7.6e-79
Identities = 156/409 (38%), Positives = 232/409 (56%)
Query: 746 EQPEELKGGALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKAK 805
+QP L GG L +QLE L WL ++ + + ILADEMGLGKT+ + + L EFK
Sbjct: 874 KQPSILIGGELMKYQLEGLEWLVSLYNNNLHGILADEMGLGKTIQTISLFAYLK-EFKNN 932
Query: 806 LPC--LVLVPLSTMPNWLAEFALWAPNLNVVEYHGCAKARAIIRQYEWHASDPDNLNKKT 863
+ L++VPLST+PNW++EF W P+LNV+ Y G + R++ + KK
Sbjct: 933 INVKNLIIVPLSTLPNWISEFNRWCPSLNVITYRG----NKLERKH---------IAKKL 979
Query: 864 SSYKFNVLLTTYEMILADSSHLRGVPWEVLVVDEGHRXXXXXXXXXXXXXXXXXQHRVLL 923
F++ +TT+++++ + S L + W +VVDEGHR ++R+LL
Sbjct: 980 LEQTFDICITTFDLVIKEKSFLMKISWNYIVVDEGHRMKNNKSRFHVFLSEFKSKYRILL 1039
Query: 924 TGTPLQNNIGEMYNLLNFLQPASFPSLSSFEEKF-----ND------LTTTQK---VEEL 969
TGTPLQNN+ E+++LLNFL P F S FE+ F N+ +T ++ + L
Sbjct: 1040 TGTPLQNNLSELWSLLNFLLPKIFSSCVDFEKWFVKSLHNEKDVYEHITEEEQLLIINRL 1099
Query: 970 KKLVAPHMLRRLKKDAMQNIPPKTERMVPVELSSIQAEYYRAMLTKNYQILRNIGKGVAQ 1029
++ P MLRR+KKD ++++P K E + +ELS Q Y+ + TK ++ + + G +
Sbjct: 1100 HSVLLPFMLRRVKKDVLKSLPKKYEYNIHIELSLYQKILYKQIQTKGFKQVNHNGS-ITT 1158
Query: 1030 QSMLNIVMQLRKVCNHPYLIPGTEPDSGSVEFLHEMRIKASAKLTLLHSMLKVLYKEGHR 1089
+ NIVMQLRK+ NHPYL D + E IK S K +L ML L K H+
Sbjct: 1159 KIFQNIVMQLRKIVNHPYLFLY---DYN----IDENIIKCSGKFEVLDRMLPKLLKFKHK 1211
Query: 1090 VLIFSQMTKLLDILEDYLNIEFGPKTYERVDGSVSVGDRQAAITRFNQD 1138
VLIFSQMTKL++IL DYL EF Y R+DG++ + +R+ I +FN +
Sbjct: 1212 VLIFSQMTKLMNILCDYL--EFRGYKYHRLDGNIGLQERKKIIDQFNNN 1258
Score = 231 (86.4 bits), Expect = 7.6e-79, Sum P(4) = 7.6e-79
Identities = 78/245 (31%), Positives = 122/245 (49%)
Query: 1136 NQDKSRFVFLLSTRSCGLGINLATADTVIIYDSDFNPHADIQAMNRAHRIGQSKRLLVYR 1195
NQD +F+LSTRS LG+NL TADTVII+DSDFNPH DIQAM R HRIGQ + V+R
Sbjct: 1400 NQDA--MIFILSTRSGSLGLNLQTADTVIIFDSDFNPHQDIQAMCRCHRIGQKNVVKVFR 1457
Query: 1196 LVVRASVEERILQLAKKKLMLDQLFVNKSGSQKEVEDILRWGTEELFNDSPGINGKDMGE 1255
+ + VEE + + A+ KL ++ + ++G ++ + E+ N I ++ +
Sbjct: 1458 FITLSGVEELVFKKAQHKLSINDKVI-QAGLFNKI-----YNDEDRQNKLKDIIQRNQ-K 1510
Query: 1256 NNTSIEEAVRDLEQKHRKRGGGLGDVYQDKCTEGSTKIVWDENAIARL--LDRSNLQSGS 1313
N+ + L + KR + + D K + E + L L+ N+ SG
Sbjct: 1511 NDMTTHPTNPLLLNYYMKRNEEELEYFLD-----FDKRYFGEQYFSLLNTLNVENVDSGQ 1565
Query: 1314 -TDLAEGDLEND--MLGSVKATEWNEETTEDQAESPVAA--VDDASAENSERKEENAVTG 1368
T ++E + E + L S+ E EE ED E+ +D + + K+++
Sbjct: 1566 FTYMSEDEKEENETYLSSIIKKEKKEEEGEDDEENQRDRNKEEDQDEDKDDDKDKDKDKD 1625
Query: 1369 IEENE 1373
EE E
Sbjct: 1626 KEEEE 1630
Score = 65 (27.9 bits), Expect = 7.6e-79, Sum P(4) = 7.6e-79
Identities = 34/167 (20%), Positives = 69/167 (41%)
Query: 338 EKQRTNNDEVSASLCEVDVGTKGLDAQRKDELAEETTDPLD--KSDKAGVHVNEIPLCKD 395
EK+R N ++ A+LC + K +D +RK L +E + + K + ++ I K+
Sbjct: 699 EKKR--NSKILANLCYNQM--KAIDQKRKIILEKEERERMKLLKDNDIEAYMKLIKTAKN 754
Query: 396 IVPFELQQVDRVLGCRVKGDDTSSSCHI--SATATDDRHSDDFLVSENHNKILEENLACD 453
+++ +L + + S C + A + +F NH E+N C
Sbjct: 755 ------KRLQELLDVTEQFLNNMSKCVLYQKKEAYQESSEQNFHGLINHKN--EDNEKCH 806
Query: 454 TDLDAEVTENLAELSPNVIRSSDEECMKNDIGVDRIQVYRRSVTKEC 500
+ +++ N+ + N+ + N G D + + + TK C
Sbjct: 807 KNYNSKDNNNILQSVHNLTTHGQQNGYNNKKGYDTMYEHNENNTKIC 853
Score = 53 (23.7 bits), Expect = 1.2e-77, Sum P(3) = 1.2e-77
Identities = 49/255 (19%), Positives = 104/255 (40%)
Query: 256 KSEQNDEVPVEKHEKSSTNGSSGIKFVLAIGASERDRKRKPEVKDEDSQKKLRVDXXXXX 315
K+E++DE+ K EK++ N +++++ K E DE KK + +
Sbjct: 153 KNEKDDEME-NKKEKNNKNEKDDEM------ENKKEKNNKNEKDDEMENKKEKNNKNEKD 205
Query: 316 XXXXXXXXXXIGTLSPGTSKLHEKQRTNN-----DEVSASLCEV---DVGTKGLDAQRKD 367
+ ++ K+ NN DE+ ++ +V + + KD
Sbjct: 206 DEMENKKEK--NNKNEKDDEMENKKEKNNKNEKDDEIKENMDKVMENQLNQSNI-LYNKD 262
Query: 368 ELAEETTDPLDKSDKAGVHVNEIPLCKDIVPFELQQVDRVLGCRVKGDDTSSSCHISATA 427
+ + + D+ D + ++ + KDIV F+LQ + G + +SC S +
Sbjct: 263 RIRKNRNNLKDEKDVSNKNILDDN--KDIVEFKLQDISS--GY------SETSCK-STNS 311
Query: 428 TDDRHSDDFLVSENHNKILEENLACDTDLDAEVTENLAELSPNVIRSSDEECMKNDIGVD 487
++ +S ++ + L +C +D D E ++ E+ + DE+ M ++
Sbjct: 312 IENGNSSSTSSCDDDSSFL---FSCSSDCDEETSDE--EILSTI--HFDEKEMSTLKSLE 364
Query: 488 RIQ-VYRRSVTKECK 501
+ + VY + K+ K
Sbjct: 365 KAKNVYFAYINKKFK 379
Score = 48 (22.0 bits), Expect = 7.6e-79, Sum P(4) = 7.6e-79
Identities = 14/59 (23%), Positives = 25/59 (42%)
Query: 13 NRNWVLKRKRRKLPCGPGLSNGKEENLVTSESPRNTPSAKRRLKNEINADRSSTKKKGN 71
N++ K K K + N KE+N + ++ KNE + + + K+K N
Sbjct: 126 NKSKSKKEKNNKNEKDDEMENKKEKNNKNEKDDEMENKKEKNNKNEKDDEMENKKEKNN 184
Score = 46 (21.3 bits), Expect = 1.2e-78, Sum P(4) = 1.2e-78
Identities = 13/53 (24%), Positives = 22/53 (41%)
Query: 19 KRKRRKLPCGPGLSNGKEENLVTSESPRNTPSAKRRLKNEINADRSSTKKKGN 71
K K K + N KE+N + ++ KNE + + + K+K N
Sbjct: 180 KEKNNKNEKDDEMENKKEKNNKNEKDDEMENKKEKNNKNEKDDEMENKKEKNN 232
Score = 46 (21.3 bits), Expect = 1.2e-78, Sum P(4) = 1.2e-78
Identities = 13/53 (24%), Positives = 22/53 (41%)
Query: 19 KRKRRKLPCGPGLSNGKEENLVTSESPRNTPSAKRRLKNEINADRSSTKKKGN 71
K K K + N KE+N + ++ KNE + + + K+K N
Sbjct: 164 KEKNNKNEKDDEMENKKEKNNKNEKDDEMENKKEKNNKNEKDDEMENKKEKNN 216
Score = 46 (21.3 bits), Expect = 1.2e-78, Sum P(4) = 1.2e-78
Identities = 13/53 (24%), Positives = 22/53 (41%)
Query: 19 KRKRRKLPCGPGLSNGKEENLVTSESPRNTPSAKRRLKNEINADRSSTKKKGN 71
K K K + N KE+N + ++ KNE + + + K+K N
Sbjct: 148 KEKNNKNEKDDEMENKKEKNNKNEKDDEMENKKEKNNKNEKDDEMENKKEKNN 200
Score = 37 (18.1 bits), Expect = 1.3e-12, Sum P(3) = 1.3e-12
Identities = 6/14 (42%), Positives = 11/14 (78%)
Query: 1095 QMTKLLDILEDYLN 1108
++ +LLD+ E +LN
Sbjct: 756 RLQELLDVTEQFLN 769
>UNIPROTKB|O96239 [details] [associations]
symbol:PFB0730w "DEAD/DEAH box helicase, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0003678 "DNA helicase
activity" evidence=ISS] [GO:0006338 "chromatin remodeling"
evidence=ISS] [GO:0016514 "SWI/SNF complex" evidence=ISS]
[GO:0032508 "DNA duplex unwinding" evidence=ISS] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003677 GO:GO:0006338
GO:GO:0016514 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0003678 KO:K11647 EMBL:AE001362 OMA:NENMNMS PIR:F71607
RefSeq:XP_001349665.1 ProteinModelPortal:O96239
EnsemblProtists:PFB0730w:mRNA GeneID:812747 KEGG:pfa:PFB0730w
EuPathDB:PlasmoDB:PF3D7_0216000 Uniprot:O96239
Length = 1997
Score = 648 (233.2 bits), Expect = 7.6e-79, Sum P(4) = 7.6e-79
Identities = 156/409 (38%), Positives = 232/409 (56%)
Query: 746 EQPEELKGGALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKAK 805
+QP L GG L +QLE L WL ++ + + ILADEMGLGKT+ + + L EFK
Sbjct: 874 KQPSILIGGELMKYQLEGLEWLVSLYNNNLHGILADEMGLGKTIQTISLFAYLK-EFKNN 932
Query: 806 LPC--LVLVPLSTMPNWLAEFALWAPNLNVVEYHGCAKARAIIRQYEWHASDPDNLNKKT 863
+ L++VPLST+PNW++EF W P+LNV+ Y G + R++ + KK
Sbjct: 933 INVKNLIIVPLSTLPNWISEFNRWCPSLNVITYRG----NKLERKH---------IAKKL 979
Query: 864 SSYKFNVLLTTYEMILADSSHLRGVPWEVLVVDEGHRXXXXXXXXXXXXXXXXXQHRVLL 923
F++ +TT+++++ + S L + W +VVDEGHR ++R+LL
Sbjct: 980 LEQTFDICITTFDLVIKEKSFLMKISWNYIVVDEGHRMKNNKSRFHVFLSEFKSKYRILL 1039
Query: 924 TGTPLQNNIGEMYNLLNFLQPASFPSLSSFEEKF-----ND------LTTTQK---VEEL 969
TGTPLQNN+ E+++LLNFL P F S FE+ F N+ +T ++ + L
Sbjct: 1040 TGTPLQNNLSELWSLLNFLLPKIFSSCVDFEKWFVKSLHNEKDVYEHITEEEQLLIINRL 1099
Query: 970 KKLVAPHMLRRLKKDAMQNIPPKTERMVPVELSSIQAEYYRAMLTKNYQILRNIGKGVAQ 1029
++ P MLRR+KKD ++++P K E + +ELS Q Y+ + TK ++ + + G +
Sbjct: 1100 HSVLLPFMLRRVKKDVLKSLPKKYEYNIHIELSLYQKILYKQIQTKGFKQVNHNGS-ITT 1158
Query: 1030 QSMLNIVMQLRKVCNHPYLIPGTEPDSGSVEFLHEMRIKASAKLTLLHSMLKVLYKEGHR 1089
+ NIVMQLRK+ NHPYL D + E IK S K +L ML L K H+
Sbjct: 1159 KIFQNIVMQLRKIVNHPYLFLY---DYN----IDENIIKCSGKFEVLDRMLPKLLKFKHK 1211
Query: 1090 VLIFSQMTKLLDILEDYLNIEFGPKTYERVDGSVSVGDRQAAITRFNQD 1138
VLIFSQMTKL++IL DYL EF Y R+DG++ + +R+ I +FN +
Sbjct: 1212 VLIFSQMTKLMNILCDYL--EFRGYKYHRLDGNIGLQERKKIIDQFNNN 1258
Score = 231 (86.4 bits), Expect = 7.6e-79, Sum P(4) = 7.6e-79
Identities = 78/245 (31%), Positives = 122/245 (49%)
Query: 1136 NQDKSRFVFLLSTRSCGLGINLATADTVIIYDSDFNPHADIQAMNRAHRIGQSKRLLVYR 1195
NQD +F+LSTRS LG+NL TADTVII+DSDFNPH DIQAM R HRIGQ + V+R
Sbjct: 1400 NQDA--MIFILSTRSGSLGLNLQTADTVIIFDSDFNPHQDIQAMCRCHRIGQKNVVKVFR 1457
Query: 1196 LVVRASVEERILQLAKKKLMLDQLFVNKSGSQKEVEDILRWGTEELFNDSPGINGKDMGE 1255
+ + VEE + + A+ KL ++ + ++G ++ + E+ N I ++ +
Sbjct: 1458 FITLSGVEELVFKKAQHKLSINDKVI-QAGLFNKI-----YNDEDRQNKLKDIIQRNQ-K 1510
Query: 1256 NNTSIEEAVRDLEQKHRKRGGGLGDVYQDKCTEGSTKIVWDENAIARL--LDRSNLQSGS 1313
N+ + L + KR + + D K + E + L L+ N+ SG
Sbjct: 1511 NDMTTHPTNPLLLNYYMKRNEEELEYFLD-----FDKRYFGEQYFSLLNTLNVENVDSGQ 1565
Query: 1314 -TDLAEGDLEND--MLGSVKATEWNEETTEDQAESPVAA--VDDASAENSERKEENAVTG 1368
T ++E + E + L S+ E EE ED E+ +D + + K+++
Sbjct: 1566 FTYMSEDEKEENETYLSSIIKKEKKEEEGEDDEENQRDRNKEEDQDEDKDDDKDKDKDKD 1625
Query: 1369 IEENE 1373
EE E
Sbjct: 1626 KEEEE 1630
Score = 65 (27.9 bits), Expect = 7.6e-79, Sum P(4) = 7.6e-79
Identities = 34/167 (20%), Positives = 69/167 (41%)
Query: 338 EKQRTNNDEVSASLCEVDVGTKGLDAQRKDELAEETTDPLD--KSDKAGVHVNEIPLCKD 395
EK+R N ++ A+LC + K +D +RK L +E + + K + ++ I K+
Sbjct: 699 EKKR--NSKILANLCYNQM--KAIDQKRKIILEKEERERMKLLKDNDIEAYMKLIKTAKN 754
Query: 396 IVPFELQQVDRVLGCRVKGDDTSSSCHI--SATATDDRHSDDFLVSENHNKILEENLACD 453
+++ +L + + S C + A + +F NH E+N C
Sbjct: 755 ------KRLQELLDVTEQFLNNMSKCVLYQKKEAYQESSEQNFHGLINHKN--EDNEKCH 806
Query: 454 TDLDAEVTENLAELSPNVIRSSDEECMKNDIGVDRIQVYRRSVTKEC 500
+ +++ N+ + N+ + N G D + + + TK C
Sbjct: 807 KNYNSKDNNNILQSVHNLTTHGQQNGYNNKKGYDTMYEHNENNTKIC 853
Score = 53 (23.7 bits), Expect = 1.2e-77, Sum P(3) = 1.2e-77
Identities = 49/255 (19%), Positives = 104/255 (40%)
Query: 256 KSEQNDEVPVEKHEKSSTNGSSGIKFVLAIGASERDRKRKPEVKDEDSQKKLRVDXXXXX 315
K+E++DE+ K EK++ N +++++ K E DE KK + +
Sbjct: 153 KNEKDDEME-NKKEKNNKNEKDDEM------ENKKEKNNKNEKDDEMENKKEKNNKNEKD 205
Query: 316 XXXXXXXXXXIGTLSPGTSKLHEKQRTNN-----DEVSASLCEV---DVGTKGLDAQRKD 367
+ ++ K+ NN DE+ ++ +V + + KD
Sbjct: 206 DEMENKKEK--NNKNEKDDEMENKKEKNNKNEKDDEIKENMDKVMENQLNQSNI-LYNKD 262
Query: 368 ELAEETTDPLDKSDKAGVHVNEIPLCKDIVPFELQQVDRVLGCRVKGDDTSSSCHISATA 427
+ + + D+ D + ++ + KDIV F+LQ + G + +SC S +
Sbjct: 263 RIRKNRNNLKDEKDVSNKNILDDN--KDIVEFKLQDISS--GY------SETSCK-STNS 311
Query: 428 TDDRHSDDFLVSENHNKILEENLACDTDLDAEVTENLAELSPNVIRSSDEECMKNDIGVD 487
++ +S ++ + L +C +D D E ++ E+ + DE+ M ++
Sbjct: 312 IENGNSSSTSSCDDDSSFL---FSCSSDCDEETSDE--EILSTI--HFDEKEMSTLKSLE 364
Query: 488 RIQ-VYRRSVTKECK 501
+ + VY + K+ K
Sbjct: 365 KAKNVYFAYINKKFK 379
Score = 48 (22.0 bits), Expect = 7.6e-79, Sum P(4) = 7.6e-79
Identities = 14/59 (23%), Positives = 25/59 (42%)
Query: 13 NRNWVLKRKRRKLPCGPGLSNGKEENLVTSESPRNTPSAKRRLKNEINADRSSTKKKGN 71
N++ K K K + N KE+N + ++ KNE + + + K+K N
Sbjct: 126 NKSKSKKEKNNKNEKDDEMENKKEKNNKNEKDDEMENKKEKNNKNEKDDEMENKKEKNN 184
Score = 46 (21.3 bits), Expect = 1.2e-78, Sum P(4) = 1.2e-78
Identities = 13/53 (24%), Positives = 22/53 (41%)
Query: 19 KRKRRKLPCGPGLSNGKEENLVTSESPRNTPSAKRRLKNEINADRSSTKKKGN 71
K K K + N KE+N + ++ KNE + + + K+K N
Sbjct: 180 KEKNNKNEKDDEMENKKEKNNKNEKDDEMENKKEKNNKNEKDDEMENKKEKNN 232
Score = 46 (21.3 bits), Expect = 1.2e-78, Sum P(4) = 1.2e-78
Identities = 13/53 (24%), Positives = 22/53 (41%)
Query: 19 KRKRRKLPCGPGLSNGKEENLVTSESPRNTPSAKRRLKNEINADRSSTKKKGN 71
K K K + N KE+N + ++ KNE + + + K+K N
Sbjct: 164 KEKNNKNEKDDEMENKKEKNNKNEKDDEMENKKEKNNKNEKDDEMENKKEKNN 216
Score = 46 (21.3 bits), Expect = 1.2e-78, Sum P(4) = 1.2e-78
Identities = 13/53 (24%), Positives = 22/53 (41%)
Query: 19 KRKRRKLPCGPGLSNGKEENLVTSESPRNTPSAKRRLKNEINADRSSTKKKGN 71
K K K + N KE+N + ++ KNE + + + K+K N
Sbjct: 148 KEKNNKNEKDDEMENKKEKNNKNEKDDEMENKKEKNNKNEKDDEMENKKEKNN 200
Score = 37 (18.1 bits), Expect = 1.3e-12, Sum P(3) = 1.3e-12
Identities = 6/14 (42%), Positives = 11/14 (78%)
Query: 1095 QMTKLLDILEDYLN 1108
++ +LLD+ E +LN
Sbjct: 756 RLQELLDVTEQFLN 769
>UNIPROTKB|F1SC64 [details] [associations]
symbol:HELLS "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0046651 "lymphocyte proliferation" evidence=IEA]
[GO:0043066 "negative regulation of apoptotic process"
evidence=IEA] [GO:0031508 "centromeric heterochromatin assembly"
evidence=IEA] [GO:0010216 "maintenance of DNA methylation"
evidence=IEA] [GO:0006346 "methylation-dependent chromatin
silencing" evidence=IEA] [GO:0005721 "centromeric heterochromatin"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0001655 "urogenital system
development" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0003682
GO:GO:0001655 GO:GO:0004386 GO:GO:0005721 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0031508 GO:GO:0010216
OMA:ETFYTAI GO:GO:0006346 GO:GO:0046651
GeneTree:ENSGT00550000075106 EMBL:CU468514
Ensembl:ENSSSCT00000011474 Uniprot:F1SC64
Length = 838
Score = 442 (160.7 bits), Expect = 1.0e-78, Sum P(4) = 1.0e-78
Identities = 103/243 (42%), Positives = 152/243 (62%)
Query: 986 MQNIPPKTERMVPVELSSIQAEY--YRAMLTKNYQILRNIGKGVAQQSMLNIVMQLRKVC 1043
+ + P + E+++ S IQ E RA++ N + + + NI+M LRK C
Sbjct: 521 IDDFPNELEKLI----SQIQPEVDRERAVVETNIPVESEVNL-----KLQNIMMLLRKCC 571
Query: 1044 NHPYLIPGTEP-DSGSVEF-LHEMRIKASAKLTLLHSMLKVLYKEGHRVLIFSQMTKLLD 1101
NHPYLI P D + EF + E + S K +L ML L GH+VL+FSQMT++LD
Sbjct: 572 NHPYLIE--YPIDPVTQEFKIDEELVTNSGKFLILDRMLPELKIRGHKVLLFSQMTRMLD 629
Query: 1102 ILEDYLNIEFGPKTYERVDGSVSVGDRQAAITRFNQDKSRFVFLLSTRSCGLGINLATAD 1161
IL DY + F + R+DGS+S +R+ + FN D F+FL+STR+ GLGINL AD
Sbjct: 630 ILMDYCH--FRNFNFSRLDGSMSYTEREKNMHSFNTDPDVFIFLVSTRAGGLGINLTAAD 687
Query: 1162 TVIIYDSDFNPHADIQAMNRAHRIGQSKRLLVYRLVVRASVEERILQLAKKKLMLDQLFV 1221
TVIIYDSD+NP +D+QA +R HRIGQ+K ++VYRLV +++++I++ A K L++L +
Sbjct: 688 TVIIYDSDWNPQSDLQAQDRCHRIGQTKPVVVYRLVTANTIDQKIVERAAAKRKLEKLII 747
Query: 1222 NKS 1224
+K+
Sbjct: 748 HKN 750
Score = 432 (157.1 bits), Expect = 1.0e-78, Sum P(4) = 1.0e-78
Identities = 104/285 (36%), Positives = 155/285 (54%)
Query: 746 EQPEELKGGALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKAK 805
+QP+ GG + +Q+E + WLR W N ILADEMGLGKTV A I+ L +
Sbjct: 213 QQPKHFTGGVMRWYQVEGMEWLRMLWENGINGILADEMGLGKTVQCIATIA-LMIQRGVP 271
Query: 806 LPCLVLVPLSTMPNWLAEFALWAPNLNVVEYHGCAKARAIIRQYEWHASDPDNLNKKTSS 865
P LV PLST+PNW+AEF + P + + YHG + R R+ H ++K+ +
Sbjct: 272 GPFLVCGPLSTLPNWMAEFQRFTPEIPTMLYHGSQQER---RKLVNH------IHKRKGT 322
Query: 866 YKFN-VLLTTYEMILADSSHLRGVPWEVLVVDEGHRXXXXXXXXXXXXXXXXXQHRVLLT 924
+ + V++T++E+ + D + L+ W+ L+VDEGHR +++LLT
Sbjct: 323 LQIHPVVITSFEIAMRDRNVLQHCYWKYLIVDEGHRIKNMKCRLIRELKRFNADNKLLLT 382
Query: 925 GTPLQNNIGEMYNLLNFLQPASFPSLSSFEEKFNDLTTTQKVEE--------------LK 970
GTPLQNN+ E+++LLNFL P F L SFE F D+T+ + E L
Sbjct: 383 GTPLQNNLSELWSLLNFLLPDVFDDLKSFESWF-DITSLSETAEDIIAKEREQNVLHMLH 441
Query: 971 KLVAPHMLRRLKKDAMQNIPPKTERMVPVELSSIQAEYYRAMLTK 1015
+++ P +LRRLK D +PPK E +V LS Q +Y A++ +
Sbjct: 442 QILTPFLLRRLKSDVALEVPPKREVVVYAPLSKKQEVFYTAIVNR 486
Score = 51 (23.0 bits), Expect = 1.0e-78, Sum P(4) = 1.0e-78
Identities = 23/99 (23%), Positives = 44/99 (44%)
Query: 118 KCTQKNDQLKPISNLDSISKRARSKIITIKSQSGVKSSGADKVSQIFGNS-ILARKRSNK 176
K +K + LK +SI + ++ K + + + +S++ IL+ + NK
Sbjct: 99 KLERKKESLKVTKGKNSIDASEENTVVMRKKRG--REDESYNISEVMSKEEILSVAKKNK 156
Query: 177 GK-----SVLALGVKSLEKSLDSSQV--DVSCSTKPENT 208
+ S L V+ L+K+ DS+ + D T +NT
Sbjct: 157 KETENESSCSNLCVEDLQKNRDSNSIIKDRLSQTVRQNT 195
Score = 48 (22.0 bits), Expect = 1.0e-78, Sum P(4) = 1.0e-78
Identities = 17/54 (31%), Positives = 28/54 (51%)
Query: 1288 EGSTKIVWDENAIARLLDRSNLQSGSTDLAEGDLENDMLGSVKATEWNEETTED 1341
+GS + V + + LLDRS+L A G ++ M G K E +E+++ D
Sbjct: 785 KGSREKVISDKDLELLLDRSDLIDQMN--ASGPIKEKM-GIFKILENSEDSSPD 835
Score = 40 (19.1 bits), Expect = 1.4e-77, Sum P(4) = 1.4e-77
Identities = 11/35 (31%), Positives = 19/35 (54%)
Query: 339 KQRTNNDEVSASLCEVDVGTKGLDAQR--KDELAE 371
K+ T N+ ++LC D+ K D+ KD L++
Sbjct: 156 KKETENESSCSNLCVEDL-QKNRDSNSIIKDRLSQ 189
>UNIPROTKB|Q9NRZ9 [details] [associations]
symbol:HELLS "Lymphoid-specific helicase" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0007067 "mitosis" evidence=IEA] [GO:0051301 "cell
division" evidence=IEA] [GO:0001655 "urogenital system development"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0043066 "negative regulation of apoptotic process"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005721
"centromeric heterochromatin" evidence=ISS] [GO:0006346
"methylation-dependent chromatin silencing" evidence=ISS]
[GO:0007275 "multicellular organismal development" evidence=ISS]
[GO:0010216 "maintenance of DNA methylation" evidence=ISS]
[GO:0031508 "centromeric heterochromatin assembly" evidence=ISS]
[GO:0000775 "chromosome, centromeric region" evidence=ISS]
[GO:0046651 "lymphocyte proliferation" evidence=ISS]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0007275 GO:GO:0005524
GO:GO:0005634 GO:GO:0051301 GO:GO:0007067 GO:GO:0003677
EMBL:CH471066 GO:GO:0006351 GO:GO:0003682 GO:GO:0001655
GO:GO:0004386 GO:GO:0005721 HSSP:Q97XQ5 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0031508
GO:GO:0010216 GO:GO:0006346 GO:GO:0046651 EMBL:AF155827
EMBL:AB102717 EMBL:AB102718 EMBL:AB102719 EMBL:AB102720
EMBL:AB102721 EMBL:AB102722 EMBL:AK314485 EMBL:AB113249
EMBL:BX538033 EMBL:AL138759 EMBL:BC015477 EMBL:BC029381
EMBL:BC030963 EMBL:BC031004 EMBL:AY007108 EMBL:AB074174
IPI:IPI00010590 IPI:IPI00807418 IPI:IPI00807455 IPI:IPI00807553
IPI:IPI00807574 IPI:IPI00807597 IPI:IPI00807667 IPI:IPI00807698
IPI:IPI00807726 RefSeq:NP_060533.2 UniGene:Hs.655830
ProteinModelPortal:Q9NRZ9 SMR:Q9NRZ9 IntAct:Q9NRZ9 STRING:Q9NRZ9
PhosphoSite:Q9NRZ9 DMDM:74761670 PaxDb:Q9NRZ9 PRIDE:Q9NRZ9
DNASU:3070 Ensembl:ENST00000348459 Ensembl:ENST00000394036
Ensembl:ENST00000394044 Ensembl:ENST00000394045 GeneID:3070
KEGG:hsa:3070 UCSC:uc001kjs.3 UCSC:uc009xul.3 UCSC:uc009xum.3
CTD:3070 GeneCards:GC10P096305 H-InvDB:HIX0017337 HGNC:HGNC:4861
HPA:CAB004491 MIM:603946 neXtProt:NX_Q9NRZ9 PharmGKB:PA35054
HOVERGEN:HBG060049 OrthoDB:EOG4SN1N4 PhylomeDB:Q9NRZ9 ChiTaRS:HELLS
GenomeRNAi:3070 NextBio:12147 ArrayExpress:Q9NRZ9 Bgee:Q9NRZ9
Genevestigator:Q9NRZ9 GermOnline:ENSG00000119969 Uniprot:Q9NRZ9
Length = 838
Score = 449 (163.1 bits), Expect = 2.2e-78, Sum P(4) = 2.2e-78
Identities = 104/244 (42%), Positives = 154/244 (63%)
Query: 986 MQNIPPKTERMVPVELSSIQAEY--YRAMLTKNYQILRNIGKGVAQQSMLNIVMQLRKVC 1043
+ + P + E+++ S IQ E RA++ N + + + NI+M LRK C
Sbjct: 521 IDDFPNELEKLI----SQIQPEVDRERAVVEVNIPVESEVNL-----KLQNIMMLLRKCC 571
Query: 1044 NHPYLIPGTEP-DSGSVEF-LHEMRIKASAKLTLLHSMLKVLYKEGHRVLIFSQMTKLLD 1101
NHPYLI P D + EF + E + S K +L ML L K GH+VL+FSQMT +LD
Sbjct: 572 NHPYLIE--YPIDPVTQEFKIDEELVTNSGKFLILDRMLPELKKRGHKVLLFSQMTSMLD 629
Query: 1102 ILEDYLNI-EFGPKTYERVDGSVSVGDRQAAITRFNQDKSRFVFLLSTRSCGLGINLATA 1160
IL DY ++ +F + R+DGS+S +R+ + FN D F+FL+STR+ GLGINL A
Sbjct: 630 ILMDYCHLRDFN---FSRLDGSMSYSEREKNMHSFNTDPEVFIFLVSTRAGGLGINLTAA 686
Query: 1161 DTVIIYDSDFNPHADIQAMNRAHRIGQSKRLLVYRLVVRASVEERILQLAKKKLMLDQLF 1220
DTVIIYDSD+NP +D+QA +R HRIGQ+K ++VYRLV +++++I++ A K L++L
Sbjct: 687 DTVIIYDSDWNPQSDLQAQDRCHRIGQTKPVVVYRLVTANTIDQKIVERAAAKRKLEKLI 746
Query: 1221 VNKS 1224
++K+
Sbjct: 747 IHKN 750
Score = 434 (157.8 bits), Expect = 2.2e-78, Sum P(4) = 2.2e-78
Identities = 104/286 (36%), Positives = 156/286 (54%)
Query: 746 EQPEELKGGALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKAK 805
+QP+ GG + +Q+E + WLR W N ILADEMGLGKTV A I+ L +
Sbjct: 213 QQPKHFTGGVMRWYQVEGMEWLRMLWENGINGILADEMGLGKTVQCIATIA-LMIQRGVP 271
Query: 806 LPCLVLVPLSTMPNWLAEFALWAPNLNVVEYHGCAKARA-IIRQYEWHASDPDNLNKKTS 864
P LV PLST+PNW+AEF + P++ + YHG + R ++R N+ K+
Sbjct: 272 GPFLVCGPLSTLPNWMAEFKRFTPDIPTMLYHGTQEERQKLVR----------NIYKRKG 321
Query: 865 SYKFN-VLLTTYEMILADSSHLRGVPWEVLVVDEGHRXXXXXXXXXXXXXXXXXQHRVLL 923
+ + + V++T++E+ + D + L+ W+ L+VDEGHR +++LL
Sbjct: 322 TLQIHPVVITSFEIAMRDRNALQHCYWKYLIVDEGHRIKNMKCRLIRELKRFNADNKLLL 381
Query: 924 TGTPLQNNIGEMYNLLNFLQPASFPSLSSFEEKFNDLTTTQKVEE--------------L 969
TGTPLQNN+ E+++LLNFL P F L SFE F D+T+ + E L
Sbjct: 382 TGTPLQNNLSELWSLLNFLLPDVFDDLKSFESWF-DITSLSETAEDIIAKEREQNVLHML 440
Query: 970 KKLVAPHMLRRLKKDAMQNIPPKTERMVPVELSSIQAEYYRAMLTK 1015
+++ P +LRRLK D +PPK E +V LS Q +Y A++ +
Sbjct: 441 HQILTPFLLRRLKSDVALEVPPKREVVVYAPLSKKQEIFYTAIVNR 486
Score = 44 (20.5 bits), Expect = 2.2e-78, Sum P(4) = 2.2e-78
Identities = 16/54 (29%), Positives = 28/54 (51%)
Query: 1288 EGSTKIVWDENAIARLLDRSNLQSGSTDLAEGDLENDMLGSVKATEWNEETTED 1341
+GS + V + + LLDRS+L A G ++ M G K E +E+++ +
Sbjct: 785 KGSREKVISDKDLELLLDRSDLIDQMN--ASGPIKEKM-GIFKILENSEDSSPE 835
Score = 42 (19.8 bits), Expect = 2.2e-78, Sum P(4) = 2.2e-78
Identities = 23/100 (23%), Positives = 43/100 (43%)
Query: 118 KCTQKNDQLKPISNLDSISKRARSKIITIKSQSGVKSSGADKVSQIFGNS-ILARKRSNK 176
K +K + LK +SI ++ + + G + + +S++ IL+ + NK
Sbjct: 99 KLERKKESLKVKKGKNSIDASEEKPVM--RKKRG-REDESYNISEVMSKEEILSVAKKNK 155
Query: 177 ------GKSVLALGVKSLEKSLDSSQV--DVSCSTKPENT 208
S L V+ L+K+ DS+ + D T +NT
Sbjct: 156 KENEDENSSSTNLCVEDLQKNKDSNSIIKDRLSETVRQNT 195
>UNIPROTKB|F1P5V4 [details] [associations]
symbol:HELLS "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0001655 "urogenital system development"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005721 "centromeric
heterochromatin" evidence=IEA] [GO:0006346 "methylation-dependent
chromatin silencing" evidence=IEA] [GO:0010216 "maintenance of DNA
methylation" evidence=IEA] [GO:0031508 "centromeric heterochromatin
assembly" evidence=IEA] [GO:0043066 "negative regulation of
apoptotic process" evidence=IEA] [GO:0046651 "lymphocyte
proliferation" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0003682
GO:GO:0004386 GO:GO:0005721 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0031508 GO:GO:0010216 OMA:ETFYTAI
GO:GO:0006346 GO:GO:0046651 GeneTree:ENSGT00550000075106
EMBL:AADN02027839 EMBL:AADN02027838 IPI:IPI00823178
Ensembl:ENSGALT00000008749 ArrayExpress:F1P5V4 Uniprot:F1P5V4
Length = 839
Score = 456 (165.6 bits), Expect = 2.2e-78, Sum P(4) = 2.2e-78
Identities = 98/193 (50%), Positives = 135/193 (69%)
Query: 1034 NIVMQLRKVCNHPYLIPGTEP-DSGSVEF-LHEMRIKASAKLTLLHSMLKVLYKEGHRVL 1091
NI+M LRK CNHPYLI P D + +F + E +K S K LL ML L K GH+VL
Sbjct: 562 NIMMLLRKCCNHPYLIE--YPLDPATQQFKVDEDLVKNSGKFLLLDRMLPELKKRGHKVL 619
Query: 1092 IFSQMTKLLDILEDYLNIEFGPKTYERVDGSVSVGDRQAAITRFNQDKSRFVFLLSTRSC 1151
+FSQMT +LDIL DY + G K + R+DGS+S DR+ + +FN D F+FL+STR+
Sbjct: 620 MFSQMTMMLDILMDYCYLR-GFK-FSRLDGSMSYSDREENMHQFNNDPEVFLFLVSTRAG 677
Query: 1152 GLGINLATADTVIIYDSDFNPHADIQAMNRAHRIGQSKRLLVYRLVVRASVEERILQLAK 1211
GLGINL ADTVIIYDSD+NP +D+QA +R HRIGQ+K ++VYRLV +++++I++ A
Sbjct: 678 GLGINLTAADTVIIYDSDWNPQSDLQAQDRCHRIGQTKPVVVYRLVTANTIDQKIVERAA 737
Query: 1212 KKLMLDQLFVNKS 1224
K L++L ++K+
Sbjct: 738 AKRKLEKLIIHKN 750
Score = 437 (158.9 bits), Expect = 2.2e-78, Sum P(4) = 2.2e-78
Identities = 110/335 (32%), Positives = 177/335 (52%)
Query: 746 EQPEELKGGALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKAK 805
+QP+ GG + +Q+E + WLR W N ILADEMGLGKT+ A I+ L E
Sbjct: 212 QQPKIFTGGVMRWYQVEGMEWLRMLWENGINGILADEMGLGKTIQCIATIA-LMVERGVP 270
Query: 806 LPCLVLVPLSTMPNWLAEFALWAPNLNVVEYHGCAKARA-IIRQYEWHASDPDNLNKKTS 864
P LV PLST+PNW++EF + P + ++ YHG + R ++R+ ++ +
Sbjct: 271 GPFLVCGPLSTLPNWMSEFKRFTPEIPLMLYHGAQQERRKLVRK----------IHGRQG 320
Query: 865 SYKFN-VLLTTYEMILADSSHLRGVPWEVLVVDEGHRXXXXXXXXXXXXXXXXXQHRVLL 923
S K + V++T++E+ + D + L+ W+ L+VDEGHR +++LL
Sbjct: 321 SLKIHPVVITSFEIAMRDRNALQSCFWKYLIVDEGHRIKNMNCRLIRELKRFNADNKLLL 380
Query: 924 TGTPLQNNIGEMYNLLNFLQPASFPSLSSFEEKFNDLTTTQKVEE-------------LK 970
TGTPLQNN+ E+++LLNFL P F L SFE F+ + T+ E+ L
Sbjct: 381 TGTPLQNNLAELWSLLNFLLPDVFDDLKSFESWFDITSITETAEDIIAKEKEQNILHMLH 440
Query: 971 KLVAPHMLRRLKKDAMQNIPPKTERMVPVELSSIQAEYYRAMLTKNYQILRNIGKGVAQQ 1030
+++ P +LRRLK D +PPK E +V L+ Q +Y A++ + +RN+ G ++
Sbjct: 441 QILTPFLLRRLKSDVALEVPPKREVVVYAPLAKKQETFYTAIVNRT---IRNL-LGNNEE 496
Query: 1031 SMLNIVMQLRKVCNHPYLIPGTEPDSGSVEFLHEM 1065
++ + R L+ E +GS + L ++
Sbjct: 497 EVVELSPTGRPKRRSRKLVDYCEEHNGSPDDLEKL 531
Score = 40 (19.1 bits), Expect = 1.8e-37, Sum P(3) = 1.8e-37
Identities = 9/29 (31%), Positives = 17/29 (58%)
Query: 31 LSNGKEENLVTSESPRNTPSAKRRLKNEI 59
++ KE+N++ TP RRLK+++
Sbjct: 427 IAKEKEQNILHMLHQILTPFLLRRLKSDV 455
Score = 38 (18.4 bits), Expect = 2.2e-78, Sum P(4) = 2.2e-78
Identities = 13/40 (32%), Positives = 17/40 (42%)
Query: 620 GKSNIHNSWIPESQLKVLAKRKLENYKAKYGTTVINICDE 659
G NI E L V K K+EN ++ N+C E
Sbjct: 134 GTYNISEIMSKEEILSVAKKSKVENQDE---SSAGNLCPE 170
Score = 37 (18.1 bits), Expect = 2.2e-78, Sum P(4) = 2.2e-78
Identities = 9/28 (32%), Positives = 17/28 (60%)
Query: 1282 YQDKCTEGSTKIVWDENAIARLLDRSNL 1309
Y+ + K++ D++ + LLDRS+L
Sbjct: 780 YEREVKGSKEKVISDKD-LELLLDRSDL 806
>UNIPROTKB|D4AA07 [details] [associations]
symbol:Smarca4 "Transcription activator BRG1" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271 Pfam:PF07533
PROSITE:PS51194 SMART:SM00490 SMART:SM00592 RGD:621728
GO:GO:0005524 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
OrthoDB:EOG418BMJ IPI:IPI00915110 Ensembl:ENSRNOT00000060926
ArrayExpress:D4AA07 Uniprot:D4AA07
Length = 1262
Score = 824 (295.1 bits), Expect = 3.1e-78, Sum P(3) = 3.1e-78
Identities = 211/508 (41%), Positives = 283/508 (55%)
Query: 743 ALTEQPEE----LKGGALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSL 798
A+TE+ ++ + G L +Q++ L WL ++ + N ILADEMGLGKT+ A I+ L
Sbjct: 536 AVTERVDKQSALMVNGVLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTIALITYL 595
Query: 799 YCEFKAKLPCLVLVPLSTMPNWLAEFALWAPNLNVVEYHGCAKARAIIRQYEWHASDPDN 858
+ P L++VPLST+ NW EF WAP++ V Y G AR A P
Sbjct: 596 MEHKRINGPFLIIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAAR--------RAFVP-- 645
Query: 859 LNKKTSSYKFNVLLTTYEMILADSSHLRGVPWEVLVVDEGHRXXXXX-XXXXXXXXXXXX 917
+ S KFNVLLTTYE I+ D L + W+ ++VDEGHR
Sbjct: 646 ---QLRSGKFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVA 702
Query: 918 QHRVLLTGTPLQNNIGEMYNLLNFLQPASFPSLSSFEEKFND--LTTTQKV----EE--- 968
R+LLTGTPLQN + E++ LLNFL P F S S+FE+ FN T +KV EE
Sbjct: 703 PRRLLLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEETIL 762
Query: 969 ----LKKLVAPHMLRRLKKDAMQNIPPKTERMVPVELSSIQAEYYRAMLTKNYQILRNI- 1023
L K++ P +LRRLKK+ +P K E ++ ++S++Q YR M K +
Sbjct: 763 IIRRLHKVLRPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTDGSE 822
Query: 1024 ----GKGVAQQSMLNIVMQLRKVCNHPYLIPGTEPD--------SGSVEFLHEMRIKASA 1071
GKG ++++N +MQLRK+CNHPY+ E G V+ L R AS
Sbjct: 823 KDKKGKG-GTKTLMNTIMQLRKICNHPYMFQHIEESFSEHLGFTGGIVQGLDLYR--ASG 879
Query: 1072 KLTLLHSMLKVLYKEGHRVLIFSQMTKLLDILEDYLNIEFGPKTYERVDGSVSVGDRQAA 1131
K LL +L L H+VL+F QMT L+ I+EDY G K Y R+DG+ DR
Sbjct: 880 KFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYR-GFK-YLRLDGTTKAEDRGML 937
Query: 1132 ITRFNQDKSR-FVFLLSTRSCGLGINLATADTVIIYDSDFNPHADIQAMNRAHRIGQSKR 1190
+ FN+ S F+FLLSTR+ GLG+NL +ADTVII+DSD+NPH D+QA +RAHRIGQ
Sbjct: 938 LKTFNEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNE 997
Query: 1191 LLVYRLVVRASVEERILQLAKKKLMLDQ 1218
+ V RL SVEE+IL AK KL +DQ
Sbjct: 998 VRVLRLCTVNSVEEKILAAAKYKLNVDQ 1025
Score = 40 (19.1 bits), Expect = 3.1e-78, Sum P(3) = 3.1e-78
Identities = 9/30 (30%), Positives = 15/30 (50%)
Query: 241 KFHPAEEVLPHSQVTKSEQNDEVPVEKHEK 270
+ +P EV P S +S +E E+ E+
Sbjct: 443 EMNPGYEVAPRSDSEESGSEEEEEEEEEEQ 472
Score = 40 (19.1 bits), Expect = 3.1e-78, Sum P(3) = 3.1e-78
Identities = 10/42 (23%), Positives = 22/42 (52%)
Query: 524 PVAVNGKVQDESAVSTEDLGERNDKMVVEDADVSLRDNEGLT 565
PV K+ D + +D+ E + + ++E+A + D G++
Sbjct: 482 PVEEKKKIPDPDS---DDVSEVDARHIIENAKQDVDDEYGVS 520
Score = 39 (18.8 bits), Expect = 3.9e-78, Sum P(3) = 3.9e-78
Identities = 7/19 (36%), Positives = 13/19 (68%)
Query: 289 ERDRKRKPEVKDEDSQKKL 307
E++R R+ +DE+ +KL
Sbjct: 322 EKERMRRLMAEDEEGYRKL 340
>RGD|1302988 [details] [associations]
symbol:Smarca2 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily a, member 2"
species:10116 "Rattus norvegicus" [GO:0000790 "nuclear chromatin"
evidence=ISO] [GO:0001105 "RNA polymerase II transcription
coactivator activity" evidence=ISO] [GO:0005634 "nucleus"
evidence=ISO] [GO:0008285 "negative regulation of cell
proliferation" evidence=ISO] [GO:0016514 "SWI/SNF complex"
evidence=ISO] [GO:0030308 "negative regulation of cell growth"
evidence=ISO] [GO:0035887 "aortic smooth muscle cell
differentiation" evidence=ISO] [GO:0043231 "intracellular
membrane-bounded organelle" evidence=ISO] [GO:0044212
"transcription regulatory region DNA binding" evidence=ISO]
[GO:0045111 "intermediate filament cytoskeleton" evidence=ISO]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=ISO] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=ISO] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=ISO]
[GO:0071564 "npBAF complex" evidence=ISO] [GO:0071565 "nBAF
complex" evidence=ISO] [GO:0071778 "WINAC complex" evidence=ISO]
[GO:0005730 "nucleolus" evidence=ISO] InterPro:IPR000330
InterPro:IPR001487 InterPro:IPR001650 InterPro:IPR006576
InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503 PROSITE:PS50014
PROSITE:PS51194 SMART:SM00297 SMART:SM00490 SMART:SM00592
SMART:SM00951 RGD:1302988 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0003677 GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 KO:K11647 InterPro:IPR013999
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 SMART:SM00573
PROSITE:PS51204 CTD:6595 HOGENOM:HOG000172363 HOVERGEN:HBG056636
OrthoDB:EOG418BMJ IPI:IPI00464435 EMBL:AY643746
RefSeq:NP_001004446.1 UniGene:Rn.94939 ProteinModelPortal:Q6DUH4
SMR:Q6DUH4 STRING:Q6DUH4 GeneID:361745 KEGG:rno:361745
UCSC:RGD:1302988 InParanoid:Q6DUH4 NextBio:677480
Genevestigator:Q6DUH4 Uniprot:Q6DUH4
Length = 1597
Score = 818 (293.0 bits), Expect = 1.0e-77, Sum P(2) = 1.0e-77
Identities = 210/536 (39%), Positives = 292/536 (54%)
Query: 718 QTLKKDASEDELPRGKGDCQQSEIV---ALTEQPEE----LKGGALFPHQLEALNWLRKC 770
+T K+D ++ + QS A++E+ E+ L G L +QL+ L W+
Sbjct: 686 ETAKQDVDDEYSMQYSARGSQSYYTVAHAISERVEKQSALLINGTLKHYQLQGLEWMVSL 745
Query: 771 WHKSKNVILADEMGLGKTVSACAFISSLYCEFKA-KLPCLVLVPLSTMPNWLAEFALWAP 829
++ + N ILADEMG GKT+ A I+ L E K P L++VPLST+ NW EF WAP
Sbjct: 746 YNNNLNGILADEMGPGKTIQTIALITYLM-EHKGLNGPYLIIVPLSTLSNWTYEFDKWAP 804
Query: 830 NLNVVEYHGC-AKARAIIRQYEWHASDPDNLNKKTSSYKFNVLLTTYEMILADSSHLRGV 888
+ + Y G A R+++ Q S KFN LLTTYE I+ D L +
Sbjct: 805 SAVKISYKGTPAMRRSLVPQLR--------------SGKFNALLTTYEYIIKDKHILAKI 850
Query: 889 PWEVLVVDEGHRXXXXX-XXXXXXXXXXXXQHRVLLTGTPLQNNIGEMYNLLNFLQPASF 947
W+ ++VDEGHR R+LLTGTPLQN + E++ LLNFL P F
Sbjct: 851 RWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRILLTGTPLQNKLPELWALLNFLLPTIF 910
Query: 948 PSLSSFEEKFN----------DLTTTQKV---EELKKLVAPHMLRRLKKDAMQNIPPKTE 994
S S+FE+ FN DL + + L K++ P +LRRLKK+ +P K E
Sbjct: 911 KSCSTFEQWFNAPFAMTGERVDLNEEETILIIRRLHKVLRPFLLRRLKKEVESQLPEKVE 970
Query: 995 RMVPVELSSIQAEYYRAMLTKNYQILRNI-----GKGVAQQSMLNIVMQLRKVCNHPYLI 1049
++ ++S++Q YR M K + GKG A+ +++N +MQLRK+CNHPY+
Sbjct: 971 YVIKCDMSALQKILYRHMQAKGILLTDGSEKDKKGKGGAK-TLMNTIMQLRKICNHPYMF 1029
Query: 1050 PGTEPDSG-----SVEFLHEMRI-KASAKLTLLHSMLKVLYKEGHRVLIFSQMTKLLDIL 1103
E S ++ + +AS K LL +L L HRVL+F QMT L+ I+
Sbjct: 1030 QHIEESFAEHLGYSNGVINGAELYRASGKFELLDRILPKLRATNHRVLLFCQMTSLMTIM 1089
Query: 1104 EDYLNIEFGPKTYERVDGSVSVGDRQAAITRFNQDKSR-FVFLLSTRSCGLGINLATADT 1162
EDY F Y R+DG+ DR A + +FN+ S+ F+FLLSTR+ GLG+NL ADT
Sbjct: 1090 EDYF--AFRNFLYLRLDGTTKSEDRAALLKKFNEPGSQYFIFLLSTRAGGLGLNLQAADT 1147
Query: 1163 VIIYDSDFNPHADIQAMNRAHRIGQSKRLLVYRLVVRASVEERILQLAKKKLMLDQ 1218
V+I+DSD+NPH D+QA +RAHRIGQ + V RL SVEE+IL AK KL +DQ
Sbjct: 1148 VVIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQ 1203
Score = 50 (22.7 bits), Expect = 1.0e-77, Sum P(2) = 1.0e-77
Identities = 21/76 (27%), Positives = 35/76 (46%)
Query: 232 SPTDSLADT--KFHPAEEVLPHSQVTKSEQNDEVPVEKHEKSSTNGSSGIKFVLAIGA-- 287
+P S D + +P EV P S +SE + E E E+ S+ + K +L +
Sbjct: 618 APKASQLDAWLEMNPGYEVAPRSDSEESESDYEE--EDEEEESSRQETEEKILLDPNSKE 675
Query: 288 -SERDRKRKPEVKDED 302
SE+D ++ E +D
Sbjct: 676 VSEKDARQIIETAKQD 691
Score = 39 (18.8 bits), Expect = 1.5e-76, Sum P(2) = 1.5e-76
Identities = 7/19 (36%), Positives = 13/19 (68%)
Query: 289 ERDRKRKPEVKDEDSQKKL 307
E++R R+ +DE+ +KL
Sbjct: 506 EKERMRRLMAEDEEGYRKL 524
>ZFIN|ZDB-GENE-030605-1 [details] [associations]
symbol:smarca4 "SWI/SNF related, matrix associated,
actin dependent regulator of chromatin, subfamily a, member 4"
species:7955 "Danio rerio" [GO:0016817 "hydrolase activity, acting
on acid anhydrides" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0016818 "hydrolase activity, acting on acid anhydrides, in
phosphorus-containing anhydrides" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0031101 "fin regeneration" evidence=IMP] [GO:0003407 "neural
retina development" evidence=IMP] [GO:0007417 "central nervous
system development" evidence=IMP] [GO:0014032 "neural crest cell
development" evidence=IMP] [GO:0060059 "embryonic retina
morphogenesis in camera-type eye" evidence=IMP] [GO:0010842 "retina
layer formation" evidence=IMP] [GO:0021634 "optic nerve formation"
evidence=IMP] [GO:0030182 "neuron differentiation" evidence=IMP]
[GO:0060973 "cell migration involved in heart development"
evidence=IMP] [GO:0001947 "heart looping" evidence=IMP] [GO:0060038
"cardiac muscle cell proliferation" evidence=IMP] [GO:0048596
"embryonic camera-type eye morphogenesis" evidence=IMP] [GO:0000185
"activation of MAPKKK activity" evidence=IMP] InterPro:IPR000330
InterPro:IPR001487 InterPro:IPR001650 InterPro:IPR006576
InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503 PROSITE:PS50014
PROSITE:PS51194 SMART:SM00297 SMART:SM00490 SMART:SM00592
SMART:SM00951 ZFIN:ZDB-GENE-030605-1 GO:GO:0005524 GO:GO:0005634
GO:GO:0006355 GO:GO:0030182 GO:GO:0003677 GO:GO:0007417
GO:GO:0004386 GO:GO:0001947 GO:GO:0010842 GO:GO:0014032
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
Gene3D:1.20.920.10 SUPFAM:SSF47370 PROSITE:PS00633
InterPro:IPR018359 GO:GO:0031101 GO:GO:0060038 GO:GO:0048596
KO:K11647 GeneTree:ENSGT00550000074659 InterPro:IPR013999
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 SMART:SM00573
PROSITE:PS51204 GO:GO:0060059 GO:GO:0000185 HOGENOM:HOG000172363
HOVERGEN:HBG056636 CTD:6597 OMA:HKPMESM EMBL:BX322663 EMBL:BC163918
EMBL:BC163920 EMBL:AY205256 EMBL:AY218841 IPI:IPI00493397
RefSeq:NP_853634.1 UniGene:Dr.2414 SMR:Q7ZSY3 STRING:Q7ZSY3
Ensembl:ENSDART00000115110 Ensembl:ENSDART00000134514 GeneID:353295
KEGG:dre:353295 InParanoid:Q7ZSY3 NextBio:20812727 GO:GO:0060973
GO:GO:0021634 Uniprot:Q7ZSY3
Length = 1627
Score = 818 (293.0 bits), Expect = 1.1e-77, Sum P(2) = 1.1e-77
Identities = 211/507 (41%), Positives = 283/507 (55%)
Query: 743 ALTEQPEE----LKGGALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSL 798
A+TE+ E+ L G L +Q++ L WL ++ + N ILADEMGLGKT+ A I+ L
Sbjct: 749 AVTEKVEKQSSLLVNGQLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTIALITYL 808
Query: 799 YCEFKA-KLPCLVLVPLSTMPNWLAEFALWAPNLNVVEYHGCAKARAIIRQYEWHASDPD 857
EFK P L++VPLST+ NW+ EF WAP++ V Y G AR A P
Sbjct: 809 M-EFKRLNGPFLIIVPLSTLSNWVYEFDKWAPSVVKVSYKGSPAAR--------RAFLPI 859
Query: 858 NLNKKTSSYKFNVLLTTYEMILADSSHLRGVPWEVLVVDEGHRXXXXX-XXXXXXXXXXX 916
S KFNVL+TTYE I+ D L + W+ ++VDEGHR
Sbjct: 860 -----LRSGKFNVLVTTYEYIIKDKQVLAKLRWKYMIVDEGHRMKNHHCKLTQVLNTHYL 914
Query: 917 XQHRVLLTGTPLQNNIGEMYNLLNFLQPASFPSLSSFEEKFND--LTTTQKV----EE-- 968
RVLLTGTPLQN + E++ LLNFL P F S S+FE+ FN T +KV EE
Sbjct: 915 APRRVLLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEETI 974
Query: 969 -----LKKLVAPHMLRRLKKDAMQNIPPKTERMVPVELSSIQAEYYRAMLTKNYQILRNI 1023
L K++ P +LRRLKK+ +P K E ++ ++S++Q YR M K +
Sbjct: 975 LIIRRLHKVLRPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTDGS 1034
Query: 1024 -----GKGVAQQSMLNIVMQLRKVCNHPYLIPGTEPD-SGSVEFLHEM-----RIKASAK 1072
GKG ++++N +MQLRK+CNHPY+ E S + F + +AS K
Sbjct: 1035 EKDKKGKG-GTKTLMNTIMQLRKICNHPYMFQHIEESFSEHLGFTGGIVQGSDLYRASGK 1093
Query: 1073 LTLLHSMLKVLYKEGHRVLIFSQMTKLLDILEDYLNIEFGPKTYERVDGSVSVGDRQAAI 1132
LL +L L H+VL+F QMT L+ I+EDY + Y R+DG+ DR +
Sbjct: 1094 FELLDRILPKLRATNHKVLLFCQMTTLMTIMEDYF--AYRNFKYLRLDGTTKAEDRGMLL 1151
Query: 1133 TRFNQDKSR-FVFLLSTRSCGLGINLATADTVIIYDSDFNPHADIQAMNRAHRIGQSKRL 1191
FN + F+FLLSTR+ GLG+NL +ADTVII+DSD+NPH D+QA +RAHRIGQ +
Sbjct: 1152 KNFNDPSHQYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEV 1211
Query: 1192 LVYRLVVRASVEERILQLAKKKLMLDQ 1218
V RL SVEE+IL AK KL +DQ
Sbjct: 1212 RVLRLCTVNSVEEKILAAAKYKLNVDQ 1238
Score = 50 (22.7 bits), Expect = 1.1e-77, Sum P(2) = 1.1e-77
Identities = 28/111 (25%), Positives = 41/111 (36%)
Query: 204 KPENTSAGVPVEGSSSCPNDDDEKQLNASPTDSL-ADT-KFHPAEEVLPHSQV-TKSEQN 260
KPEN G P G P D+ Q++ P + D+ K + Q+ T E N
Sbjct: 606 KPENAEGGAPALGPDGEPLDETS-QMSDLPVKVIHVDSGKILTGMDAPKAGQLDTWLEMN 664
Query: 261 DEVPVEKHEKSSTNGSSGIKF-VLAIGASERDRKRKPEVKDEDSQKKLRVD 310
V S +GS + S+ + K + D DS+ VD
Sbjct: 665 PGYEVAPRSDSEDSGSDEEEDDEEEPQPSQAPTEEKKVIPDPDSEDVSEVD 715
Score = 46 (21.3 bits), Expect = 1.9e-76, Sum P(3) = 1.9e-76
Identities = 10/50 (20%), Positives = 24/50 (48%)
Query: 517 EDDKDSDPVAVNGKVQDESAV---STEDLGERNDKMVVEDADVSLRDNEG 563
E+D + +P +++ + +ED+ E + + ++E A + D G
Sbjct: 683 EEDDEEEPQPSQAPTEEKKVIPDPDSEDVSEVDARHIIEHAKQDVDDEYG 732
Score = 39 (18.8 bits), Expect = 1.9e-76, Sum P(3) = 1.9e-76
Identities = 7/19 (36%), Positives = 13/19 (68%)
Query: 289 ERDRKRKPEVKDEDSQKKL 307
E++R R+ +DE+ +KL
Sbjct: 541 EKERMRRLMAEDEEGYRKL 559
>UNIPROTKB|E1BCV0 [details] [associations]
symbol:HELLS "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0046651 "lymphocyte proliferation" evidence=IEA]
[GO:0043066 "negative regulation of apoptotic process"
evidence=IEA] [GO:0031508 "centromeric heterochromatin assembly"
evidence=IEA] [GO:0010216 "maintenance of DNA methylation"
evidence=IEA] [GO:0006346 "methylation-dependent chromatin
silencing" evidence=IEA] [GO:0005721 "centromeric heterochromatin"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0001655 "urogenital system
development" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0003682
GO:GO:0001655 GO:GO:0004386 GO:GO:0005721 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0031508 GO:GO:0010216
OMA:ETFYTAI GO:GO:0006346 GO:GO:0046651
GeneTree:ENSGT00550000075106 EMBL:DAAA02058849 EMBL:DAAA02058850
EMBL:DAAA02058851 IPI:IPI00710948 Ensembl:ENSBTAT00000007848
Uniprot:E1BCV0
Length = 816
Score = 442 (160.7 bits), Expect = 2.0e-77, Sum P(4) = 2.0e-77
Identities = 94/193 (48%), Positives = 132/193 (68%)
Query: 1034 NIVMQLRKVCNHPYLIPGTEP-DSGSVEF-LHEMRIKASAKLTLLHSMLKVLYKEGHRVL 1091
NI+M LRK CNHPYLI P D + EF + E + S K +L ML L GH+VL
Sbjct: 540 NIMMLLRKCCNHPYLIE--YPIDPVTQEFKVDEELVTNSGKFLILDRMLPELKTRGHKVL 597
Query: 1092 IFSQMTKLLDILEDYLNIEFGPKTYERVDGSVSVGDRQAAITRFNQDKSRFVFLLSTRSC 1151
+FSQMT++LDIL DY + F + R+DGS+S +R+ I FN D F+FL+STR+
Sbjct: 598 LFSQMTRMLDILMDYCH--FRNFNFSRLDGSMSYSEREKNIHSFNTDPDVFIFLVSTRAG 655
Query: 1152 GLGINLATADTVIIYDSDFNPHADIQAMNRAHRIGQSKRLLVYRLVVRASVEERILQLAK 1211
GLGINL ADTVIIYDSD+NP +D+QA +R HRIGQ++ ++VYRLV +++++I++ A
Sbjct: 656 GLGINLTAADTVIIYDSDWNPQSDLQAQDRCHRIGQTRPVVVYRLVTANTIDQKIVERAA 715
Query: 1212 KKLMLDQLFVNKS 1224
K L++L ++K+
Sbjct: 716 AKRKLEKLIIHKN 728
Score = 435 (158.2 bits), Expect = 2.0e-77, Sum P(4) = 2.0e-77
Identities = 102/285 (35%), Positives = 156/285 (54%)
Query: 746 EQPEELKGGALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKAK 805
+QP+ GG + +Q+E + WLR W N ILADEMGLGKTV A I+ L +
Sbjct: 191 QQPKHFTGGVMRWYQVEGMEWLRMLWENGINGILADEMGLGKTVQCIATIA-LMIQRGVP 249
Query: 806 LPCLVLVPLSTMPNWLAEFALWAPNLNVVEYHGCAKARAIIRQYEWHASDPDNLNKKTSS 865
P LV PLST+PNW+AEF + P + + YHG + R I+ ++ ++++ +
Sbjct: 250 GPFLVCGPLSTLPNWMAEFKRFTPEIPTMLYHGTQQERRILVKH---------IHERKGT 300
Query: 866 YKFN-VLLTTYEMILADSSHLRGVPWEVLVVDEGHRXXXXXXXXXXXXXXXXXQHRVLLT 924
+ + V++T++E+ + D + L+ W+ L+VDEGHR +++LLT
Sbjct: 301 LQIHPVVITSFEIAMRDRTTLQNCYWKYLIVDEGHRIKNMKCRLIRELKRFNADNKLLLT 360
Query: 925 GTPLQNNIGEMYNLLNFLQPASFPSLSSFEEKFNDLTTTQKVEE--------------LK 970
GTPLQNN+ E+++LLNFL P F L SFE F D+T+ + E L
Sbjct: 361 GTPLQNNLSELWSLLNFLLPDVFDDLKSFESWF-DITSLSETAEDIIAKEREQNVLHMLH 419
Query: 971 KLVAPHMLRRLKKDAMQNIPPKTERMVPVELSSIQAEYYRAMLTK 1015
+++ P +LRRLK D +PPK E +V LS Q +Y A++ +
Sbjct: 420 QILTPFLLRRLKSDVALEVPPKREVVVYAPLSKKQEIFYTAIVNR 464
Score = 45 (20.9 bits), Expect = 2.0e-77, Sum P(4) = 2.0e-77
Identities = 16/54 (29%), Positives = 28/54 (51%)
Query: 1288 EGSTKIVWDENAIARLLDRSNLQSGSTDLAEGDLENDMLGSVKATEWNEETTED 1341
+GS + V + + LLDRS+L A G ++ M G K E +E+++ +
Sbjct: 763 KGSREKVISDKDLELLLDRSDLLDQMN--ASGPVKEKM-GIFKILENSEDSSSE 813
Score = 37 (18.1 bits), Expect = 2.0e-77, Sum P(4) = 2.0e-77
Identities = 16/87 (18%), Positives = 37/87 (42%)
Query: 225 DEKQLNASPTDSLADTKFHPAEEVLPHSQVTKSEQNDEVPVEK-HEKSSTNGSSGIKFVL 283
+++QL + K + + + SE+N + ++ E S N S +
Sbjct: 66 EQQQLEEQKKKEKLERKKESLKVTKDKNSIDASEENAVIKKKRGREDESYNISEVMSKEE 125
Query: 284 AIGASERDRKRKPEVKDEDSQKKLRVD 310
+ +++++K E +DE S + V+
Sbjct: 126 ILSVAKKNKK---ENEDESSSSNMCVE 149
>MGI|MGI:106209 [details] [associations]
symbol:Hells "helicase, lymphoid specific" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000775 "chromosome, centromeric region" evidence=IDA]
[GO:0001655 "urogenital system development" evidence=IMP]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IDA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005721 "centromeric heterochromatin"
evidence=IDA] [GO:0006306 "DNA methylation" evidence=IMP]
[GO:0006342 "chromatin silencing" evidence=IMP] [GO:0006346
"methylation-dependent chromatin silencing" evidence=IMP]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0007049 "cell cycle" evidence=IEA] [GO:0007067
"mitosis" evidence=IEA] [GO:0007275 "multicellular organismal
development" evidence=IMP] [GO:0010216 "maintenance of DNA
methylation" evidence=IMP] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0030098 "lymphocyte differentiation"
evidence=TAS] [GO:0031508 "centromeric heterochromatin assembly"
evidence=IMP] [GO:0043066 "negative regulation of apoptotic
process" evidence=IMP] [GO:0051301 "cell division" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 MGI:MGI:106209 GO:GO:0005524
GO:GO:0005634 GO:GO:0043066 GO:GO:0051301 GO:GO:0007067
GO:GO:0003677 GO:GO:0006351 GO:GO:0003682 GO:GO:0001655
GO:GO:0004386 GO:GO:0005721 HSSP:Q97XQ5 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0031508
GO:GO:0010216 HOGENOM:HOG000172362 OMA:ETFYTAI GO:GO:0006346
GO:GO:0030098 GO:GO:0046651 CTD:3070 HOVERGEN:HBG060049
OrthoDB:EOG4SN1N4 EMBL:U25691 EMBL:AF155210 EMBL:AK013266
EMBL:AK147126 EMBL:BC020056 EMBL:BC100394 IPI:IPI00121431
IPI:IPI00808497 PIR:JC4666 RefSeq:NP_032260.2 UniGene:Mm.392920
UniGene:Mm.486446 UniGene:Mm.57223 ProteinModelPortal:Q60848
SMR:Q60848 DIP:DIP-43735N IntAct:Q60848 MINT:MINT-2521001
STRING:Q60848 PhosphoSite:Q60848 PaxDb:Q60848 PRIDE:Q60848
DNASU:15201 Ensembl:ENSMUST00000025965 GeneID:15201 KEGG:mmu:15201
UCSC:uc008hjt.1 GeneTree:ENSGT00550000075106 InParanoid:Q60848
NextBio:287739 Bgee:Q60848 CleanEx:MM_HELLS Genevestigator:Q60848
GermOnline:ENSMUSG00000025001 Uniprot:Q60848
Length = 821
Score = 444 (161.4 bits), Expect = 3.5e-77, Sum P(3) = 3.5e-77
Identities = 94/193 (48%), Positives = 132/193 (68%)
Query: 1034 NIVMQLRKVCNHPYLIPGTEP-DSGSVEF-LHEMRIKASAKLTLLHSMLKVLYKEGHRVL 1091
NI+M LRK CNHPY+I P D + EF + E + S K +L ML L K GH+VL
Sbjct: 545 NIMMLLRKCCNHPYMIE--YPIDPVTQEFKIDEELVTNSGKFLILDRMLPELKKRGHKVL 602
Query: 1092 IFSQMTKLLDILEDYLNIEFGPKTYERVDGSVSVGDRQAAITRFNQDKSRFVFLLSTRSC 1151
+FSQMT +LDIL DY ++ + R+DGS+S +R+ I FN D F+FL+STR+
Sbjct: 603 VFSQMTSMLDILMDYCHLR--NFIFSRLDGSMSYSEREKNIYSFNTDPDVFLFLVSTRAG 660
Query: 1152 GLGINLATADTVIIYDSDFNPHADIQAMNRAHRIGQSKRLLVYRLVVRASVEERILQLAK 1211
GLGINL ADTVIIYDSD+NP +D+QA +R HRIGQ+K ++VYRLV +++++I++ A
Sbjct: 661 GLGINLTAADTVIIYDSDWNPQSDLQAQDRCHRIGQTKPVVVYRLVTANTIDQKIVERAA 720
Query: 1212 KKLMLDQLFVNKS 1224
K L++L ++K+
Sbjct: 721 AKRKLEKLIIHKN 733
Score = 429 (156.1 bits), Expect = 3.5e-77, Sum P(3) = 3.5e-77
Identities = 102/285 (35%), Positives = 155/285 (54%)
Query: 746 EQPEELKGGALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKAK 805
+QP+ GG + +Q+E + WLR W N ILADEMGLGKTV A I+ L +
Sbjct: 196 QQPKHFTGGVMRWYQVEGMEWLRMLWENGINGILADEMGLGKTVQCIATIA-LMIQRGVP 254
Query: 806 LPCLVLVPLSTMPNWLAEFALWAPNLNVVEYHGCAKARAIIRQYEWHASDPDNLNKKTSS 865
P LV PLST+PNW+AEF + P + + YHG + R + + N++K+ +
Sbjct: 255 GPFLVCGPLSTLPNWMAEFKRFTPEIPTLLYHGTREDRRKLVK---------NIHKRQGT 305
Query: 866 YKFN-VLLTTYEMILADSSHLRGVPWEVLVVDEGHRXXXXXXXXXXXXXXXXXQHRVLLT 924
+ + V++T++E+ + D + L+ W+ L+VDEGHR +++LLT
Sbjct: 306 LQIHPVVVTSFEIAMRDQNALQHCYWKYLIVDEGHRIKNMKCRLIRELKRFNADNKLLLT 365
Query: 925 GTPLQNNIGEMYNLLNFLQPASFPSLSSFEEKFNDLTTTQKVEE--------------LK 970
GTPLQNN+ E+++LLNFL P F L SFE F D+T+ + E L
Sbjct: 366 GTPLQNNLSELWSLLNFLLPDVFDDLKSFESWF-DITSLSETAEDIIAKEREQNVLHMLH 424
Query: 971 KLVAPHMLRRLKKDAMQNIPPKTERMVPVELSSIQAEYYRAMLTK 1015
+++ P +LRRLK D +PPK E +V L + Q +Y A++ +
Sbjct: 425 QILTPFLLRRLKSDVALEVPPKREVVVYAPLCNKQEIFYTAIVNR 469
Score = 40 (19.1 bits), Expect = 3.5e-77, Sum P(3) = 3.5e-77
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 1282 YQDKCTEGSTKIVWDENAIARLLDRSNL 1309
Y+ + K++ DE+ + LLDRS+L
Sbjct: 763 YEREVKGSREKVISDED-LELLLDRSDL 789
>UNIPROTKB|A7Z019 [details] [associations]
symbol:SMARCA4 "Transcription activator BRG1" species:9913
"Bos taurus" [GO:0071565 "nBAF complex" evidence=ISS] [GO:0071564
"npBAF complex" evidence=ISS] [GO:0060347 "heart trabecula
formation" evidence=IEA] [GO:0060318 "definitive erythrocyte
differentiation" evidence=IEA] [GO:0048730 "epidermis
morphogenesis" evidence=IEA] [GO:0048562 "embryonic organ
morphogenesis" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0043966 "histone H3 acetylation" evidence=IEA] [GO:0043388
"positive regulation of DNA binding" evidence=IEA] [GO:0035887
"aortic smooth muscle cell differentiation" evidence=IEA]
[GO:0035116 "embryonic hindlimb morphogenesis" evidence=IEA]
[GO:0030902 "hindbrain development" evidence=IEA] [GO:0030900
"forebrain development" evidence=IEA] [GO:0030216 "keratinocyte
differentiation" evidence=IEA] [GO:0030198 "extracellular matrix
organization" evidence=IEA] [GO:0019827 "stem cell maintenance"
evidence=IEA] [GO:0010424 "DNA methylation on cytosine within a CG
sequence" evidence=IEA] [GO:0008134 "transcription factor binding"
evidence=IEA] [GO:0007403 "glial cell fate determination"
evidence=IEA] [GO:0006346 "methylation-dependent chromatin
silencing" evidence=IEA] [GO:0006338 "chromatin remodeling"
evidence=IEA] [GO:0005726 "perichromatin fibrils" evidence=IEA]
[GO:0005719 "nuclear euchromatin" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0001889 "liver development"
evidence=IEA] [GO:0001835 "blastocyst hatching" evidence=IEA]
[GO:0001832 "blastocyst growth" evidence=IEA] [GO:0001570
"vasculogenesis" evidence=IEA] [GO:0000977 "RNA polymerase II
regulatory region sequence-specific DNA binding" evidence=IEA]
[GO:0000902 "cell morphogenesis" evidence=IEA] [GO:0000792
"heterochromatin" evidence=IEA] [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 InterPro:IPR006576 InterPro:IPR014978
Pfam:PF00176 Pfam:PF00271 Pfam:PF00439 Pfam:PF07533 Pfam:PF08880
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 SMART:SM00592 SMART:SM00951 GO:GO:0005524
GO:GO:0030216 GO:GO:0045944 GO:GO:0030198 GO:GO:0030900
GO:GO:0001889 GO:GO:0006351 GO:GO:0003682 GO:GO:0006338
GO:GO:0000122 GO:GO:0071564 GO:GO:0071565 GO:GO:0000902
GO:GO:0004386 GO:GO:0001570 GO:GO:0035116 GO:GO:0005719
GO:GO:0030902 GO:GO:0048730 GO:GO:0000977 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0019827
Gene3D:1.20.920.10 SUPFAM:SSF47370 PROSITE:PS00633
InterPro:IPR018359 GO:GO:0000792 GO:GO:0060347 GO:GO:0043966
GO:GO:0043388 KO:K11647 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
GO:GO:0001835 GO:GO:0007403 GO:GO:0006346 GO:GO:0010424
GO:GO:0060318 GO:GO:0048562 GO:GO:0001832 GO:GO:0005726
HOGENOM:HOG000172363 HOVERGEN:HBG056636 GO:GO:0035887
OrthoDB:EOG418BMJ EMBL:BC153216 IPI:IPI00693529
RefSeq:NP_001099084.1 UniGene:Bt.27590 ProteinModelPortal:A7Z019
SMR:A7Z019 STRING:A7Z019 PRIDE:A7Z019 GeneID:414274 KEGG:bta:414274
CTD:6597 InParanoid:A7Z019 NextBio:20818684 ArrayExpress:A7Z019
Uniprot:A7Z019
Length = 1606
Score = 824 (295.1 bits), Expect = 1.7e-76, Sum P(5) = 1.7e-76
Identities = 211/508 (41%), Positives = 283/508 (55%)
Query: 743 ALTEQPEE----LKGGALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSL 798
A+TE+ ++ + G L +Q++ L WL ++ + N ILADEMGLGKT+ A I+ L
Sbjct: 729 AVTERVDKQSALMVNGVLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTIALITYL 788
Query: 799 YCEFKAKLPCLVLVPLSTMPNWLAEFALWAPNLNVVEYHGCAKARAIIRQYEWHASDPDN 858
+ P L++VPLST+ NW EF WAP++ V Y G AR A P
Sbjct: 789 MEHKRINGPFLIIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAAR--------RAFVP-- 838
Query: 859 LNKKTSSYKFNVLLTTYEMILADSSHLRGVPWEVLVVDEGHRXXXXX-XXXXXXXXXXXX 917
+ S KFNVLLTTYE I+ D L + W+ ++VDEGHR
Sbjct: 839 ---QLRSGKFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVA 895
Query: 918 QHRVLLTGTPLQNNIGEMYNLLNFLQPASFPSLSSFEEKFND--LTTTQKV----EE--- 968
R+LLTGTPLQN + E++ LLNFL P F S S+FE+ FN T +KV EE
Sbjct: 896 PRRLLLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEETIL 955
Query: 969 ----LKKLVAPHMLRRLKKDAMQNIPPKTERMVPVELSSIQAEYYRAMLTKNYQILRNI- 1023
L K++ P +LRRLKK+ +P K E ++ ++S++Q YR M K +
Sbjct: 956 IIRRLHKVLRPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTDGSE 1015
Query: 1024 ----GKGVAQQSMLNIVMQLRKVCNHPYLIPGTEPD--------SGSVEFLHEMRIKASA 1071
GKG ++++N +MQLRK+CNHPY+ E G V+ L R AS
Sbjct: 1016 KDKKGKG-GTKTLMNTIMQLRKICNHPYMFQHIEESFSEHLGFTGGIVQGLDLYR--ASG 1072
Query: 1072 KLTLLHSMLKVLYKEGHRVLIFSQMTKLLDILEDYLNIEFGPKTYERVDGSVSVGDRQAA 1131
K LL +L L H+VL+F QMT L+ I+EDY G K Y R+DG+ DR
Sbjct: 1073 KFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYR-GFK-YLRLDGTTKAEDRGML 1130
Query: 1132 ITRFNQDKSR-FVFLLSTRSCGLGINLATADTVIIYDSDFNPHADIQAMNRAHRIGQSKR 1190
+ FN+ S F+FLLSTR+ GLG+NL +ADTVII+DSD+NPH D+QA +RAHRIGQ
Sbjct: 1131 LKTFNEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNE 1190
Query: 1191 LLVYRLVVRASVEERILQLAKKKLMLDQ 1218
+ V RL SVEE+IL AK KL +DQ
Sbjct: 1191 VRVLRLCTVNSVEEKILAAAKYKLNVDQ 1218
Score = 43 (20.2 bits), Expect = 1.7e-76, Sum P(5) = 1.7e-76
Identities = 9/20 (45%), Positives = 11/20 (55%)
Query: 1351 DDASAENSERKEENAVTGIE 1370
DD+ E SE +EE G E
Sbjct: 1527 DDSEGEESEEEEEGEEEGSE 1546
Score = 40 (19.1 bits), Expect = 1.7e-76, Sum P(5) = 1.7e-76
Identities = 9/30 (30%), Positives = 15/30 (50%)
Query: 241 KFHPAEEVLPHSQVTKSEQNDEVPVEKHEK 270
+ +P EV P S +S +E E+ E+
Sbjct: 636 EMNPGYEVAPRSDSEESGSEEEEEEEEEEQ 665
Score = 40 (19.1 bits), Expect = 1.7e-76, Sum P(5) = 1.7e-76
Identities = 10/42 (23%), Positives = 22/42 (52%)
Query: 524 PVAVNGKVQDESAVSTEDLGERNDKMVVEDADVSLRDNEGLT 565
PV K+ D + +D+ E + + ++E+A + D G++
Sbjct: 675 PVEEKKKIPDPDS---DDVSEVDARHIIENAKQDVDDEYGVS 713
Score = 39 (18.8 bits), Expect = 2.1e-76, Sum P(5) = 2.1e-76
Identities = 7/19 (36%), Positives = 13/19 (68%)
Query: 289 ERDRKRKPEVKDEDSQKKL 307
E++R R+ +DE+ +KL
Sbjct: 515 EKERMRRLMAEDEEGYRKL 533
Score = 37 (18.1 bits), Expect = 1.7e-76, Sum P(5) = 1.7e-76
Identities = 8/16 (50%), Positives = 10/16 (62%)
Query: 206 ENTSAGVPVEGSSSCP 221
E+ S+ VP G SS P
Sbjct: 128 EHASSPVPASGPSSGP 143
>MGI|MGI:88192 [details] [associations]
symbol:Smarca4 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily a, member 4"
species:10090 "Mus musculus" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IMP;IDA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0000790 "nuclear
chromatin" evidence=ISO] [GO:0000792 "heterochromatin"
evidence=IDA] [GO:0000902 "cell morphogenesis" evidence=IMP]
[GO:0000977 "RNA polymerase II regulatory region sequence-specific
DNA binding" evidence=IDA] [GO:0001105 "RNA polymerase II
transcription coactivator activity" evidence=ISO] [GO:0001570
"vasculogenesis" evidence=IMP] [GO:0001701 "in utero embryonic
development" evidence=IMP] [GO:0001832 "blastocyst growth"
evidence=IMP] [GO:0001835 "blastocyst hatching" evidence=IMP]
[GO:0001889 "liver development" evidence=IMP] [GO:0002039 "p53
binding" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IDA] [GO:0003713 "transcription
coactivator activity" evidence=ISO] [GO:0003714 "transcription
corepressor activity" evidence=ISO] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0005719 "nuclear euchromatin" evidence=IDA]
[GO:0005726 "perichromatin fibrils" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] [GO:0006200 "ATP catabolic process"
evidence=TAS] [GO:0006334 "nucleosome assembly" evidence=TAS]
[GO:0006337 "nucleosome disassembly" evidence=ISO] [GO:0006338
"chromatin remodeling" evidence=ISO;IMP] [GO:0006346
"methylation-dependent chromatin silencing" evidence=IDA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0007399 "nervous system development"
evidence=IMP] [GO:0007403 "glial cell fate determination"
evidence=IMP] [GO:0007507 "heart development" evidence=IMP]
[GO:0008094 "DNA-dependent ATPase activity" evidence=ISO]
[GO:0008134 "transcription factor binding" evidence=IPI]
[GO:0010424 "DNA methylation on cytosine within a CG sequence"
evidence=IMP] [GO:0016514 "SWI/SNF complex" evidence=ISO;IDA;TAS]
[GO:0016568 "chromatin modification" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0016817 "hydrolase activity,
acting on acid anhydrides" evidence=IEA] [GO:0016818 "hydrolase
activity, acting on acid anhydrides, in phosphorus-containing
anhydrides" evidence=IEA] [GO:0016887 "ATPase activity"
evidence=IMP;TAS] [GO:0019827 "stem cell maintenance" evidence=IMP]
[GO:0022008 "neurogenesis" evidence=IDA] [GO:0030198 "extracellular
matrix organization" evidence=IMP] [GO:0030216 "keratinocyte
differentiation" evidence=IMP] [GO:0030308 "negative regulation of
cell growth" evidence=ISO] [GO:0030900 "forebrain development"
evidence=IMP] [GO:0030902 "hindbrain development" evidence=IMP]
[GO:0030957 "Tat protein binding" evidence=ISO] [GO:0032403
"protein complex binding" evidence=ISO] [GO:0035116 "embryonic
hindlimb morphogenesis" evidence=IMP] [GO:0035887 "aortic smooth
muscle cell differentiation" evidence=IMP] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=ISO] [GO:0043388
"positive regulation of DNA binding" evidence=IGI] [GO:0043923
"positive regulation by host of viral transcription" evidence=ISO]
[GO:0043966 "histone H3 acetylation" evidence=IMP] [GO:0045892
"negative regulation of transcription, DNA-dependent" evidence=ISO]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=ISO] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IGI;ISO;IMP] [GO:0047485
"protein N-terminus binding" evidence=ISO] [GO:0048562 "embryonic
organ morphogenesis" evidence=IMP] [GO:0048730 "epidermis
morphogenesis" evidence=IMP] [GO:0050681 "androgen receptor
binding" evidence=ISO] [GO:0051091 "positive regulation of
sequence-specific DNA binding transcription factor activity"
evidence=ISO] [GO:0060318 "definitive erythrocyte differentiation"
evidence=IMP] [GO:0060347 "heart trabecula formation" evidence=IGI]
[GO:0060766 "negative regulation of androgen receptor signaling
pathway" evidence=ISO] [GO:0070577 "histone acetyl-lysine binding"
evidence=ISO] [GO:0071564 "npBAF complex" evidence=ISO;IDA]
[GO:0071565 "nBAF complex" evidence=IDA] [GO:0071778 "WINAC
complex" evidence=ISO] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 InterPro:IPR006576 InterPro:IPR014978
Pfam:PF00176 Pfam:PF00271 Pfam:PF00439 Pfam:PF07533 Pfam:PF08880
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 SMART:SM00592 SMART:SM00951 MGI:MGI:88192
GO:GO:0005524 GO:GO:0003714 GO:GO:0030216 GO:GO:0045944
GO:GO:0030198 GO:GO:0030900 GO:GO:0001889 EMBL:CH466522
GO:GO:0006351 GO:GO:0003682 GO:GO:0016887 GO:GO:0006338
GO:GO:0000122 GO:GO:0071564 GO:GO:0016514 GO:GO:0071565
GO:GO:0000902 GO:GO:0004386 GO:GO:0001570 GO:GO:0035116
GO:GO:0005719 GO:GO:0030902 GO:GO:0048730 GO:GO:0000977
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0019827 GO:GO:0006334 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 GO:GO:0000792 GO:GO:0060347
GO:GO:0043966 GO:GO:0043388 KO:K11647 GeneTree:ENSGT00550000074659
InterPro:IPR013999 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 SMART:SM00573 PROSITE:PS51204 GO:GO:0001835
GO:GO:0007403 GO:GO:0006346 GO:GO:0010424 GO:GO:0060318
GO:GO:0048562 GO:GO:0001832 GO:GO:0005726 HOGENOM:HOG000172363
HOVERGEN:HBG056636 GO:GO:0035887 OrthoDB:EOG418BMJ CTD:6597
EMBL:AK147285 EMBL:AK160825 EMBL:AK166837 EMBL:BC079560
IPI:IPI00875789 IPI:IPI00955124 RefSeq:NP_001167549.1
RefSeq:NP_001167550.1 RefSeq:NP_035547.2 UniGene:Mm.286593
ProteinModelPortal:Q3TKT4 SMR:Q3TKT4 DIP:DIP-40650N DIP:DIP-59249N
IntAct:Q3TKT4 MINT:MINT-1958721 STRING:Q3TKT4 PhosphoSite:Q3TKT4
PaxDb:Q3TKT4 PRIDE:Q3TKT4 Ensembl:ENSMUST00000034707
Ensembl:ENSMUST00000098948 Ensembl:ENSMUST00000174008 GeneID:20586
KEGG:mmu:20586 UCSC:uc009omd.2 UCSC:uc009ome.2 InParanoid:Q3TUD7
NextBio:298883 Bgee:Q3TKT4 Genevestigator:Q3TKT4 Uniprot:Q3TKT4
Length = 1613
Score = 824 (295.1 bits), Expect = 1.8e-76, Sum P(5) = 1.8e-76
Identities = 211/508 (41%), Positives = 283/508 (55%)
Query: 743 ALTEQPEE----LKGGALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSL 798
A+TE+ ++ + G L +Q++ L WL ++ + N ILADEMGLGKT+ A I+ L
Sbjct: 737 AVTERVDKQSALMVNGVLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTIALITYL 796
Query: 799 YCEFKAKLPCLVLVPLSTMPNWLAEFALWAPNLNVVEYHGCAKARAIIRQYEWHASDPDN 858
+ P L++VPLST+ NW EF WAP++ V Y G AR A P
Sbjct: 797 MEHKRINGPFLIIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAAR--------RAFVP-- 846
Query: 859 LNKKTSSYKFNVLLTTYEMILADSSHLRGVPWEVLVVDEGHRXXXXX-XXXXXXXXXXXX 917
+ S KFNVLLTTYE I+ D L + W+ ++VDEGHR
Sbjct: 847 ---QLRSGKFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVA 903
Query: 918 QHRVLLTGTPLQNNIGEMYNLLNFLQPASFPSLSSFEEKFND--LTTTQKV----EE--- 968
R+LLTGTPLQN + E++ LLNFL P F S S+FE+ FN T +KV EE
Sbjct: 904 PRRLLLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEETIL 963
Query: 969 ----LKKLVAPHMLRRLKKDAMQNIPPKTERMVPVELSSIQAEYYRAMLTKNYQILRNI- 1023
L K++ P +LRRLKK+ +P K E ++ ++S++Q YR M K +
Sbjct: 964 IIRRLHKVLRPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTDGSE 1023
Query: 1024 ----GKGVAQQSMLNIVMQLRKVCNHPYLIPGTEPD--------SGSVEFLHEMRIKASA 1071
GKG ++++N +MQLRK+CNHPY+ E G V+ L R AS
Sbjct: 1024 KDKKGKG-GTKTLMNTIMQLRKICNHPYMFQHIEESFSEHLGFTGGIVQGLDLYR--ASG 1080
Query: 1072 KLTLLHSMLKVLYKEGHRVLIFSQMTKLLDILEDYLNIEFGPKTYERVDGSVSVGDRQAA 1131
K LL +L L H+VL+F QMT L+ I+EDY G K Y R+DG+ DR
Sbjct: 1081 KFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYR-GFK-YLRLDGTTKAEDRGML 1138
Query: 1132 ITRFNQDKSR-FVFLLSTRSCGLGINLATADTVIIYDSDFNPHADIQAMNRAHRIGQSKR 1190
+ FN+ S F+FLLSTR+ GLG+NL +ADTVII+DSD+NPH D+QA +RAHRIGQ
Sbjct: 1139 LKTFNEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNE 1198
Query: 1191 LLVYRLVVRASVEERILQLAKKKLMLDQ 1218
+ V RL SVEE+IL AK KL +DQ
Sbjct: 1199 VRVLRLCTVNSVEEKILAAAKYKLNVDQ 1226
Score = 43 (20.2 bits), Expect = 1.8e-76, Sum P(5) = 1.8e-76
Identities = 9/20 (45%), Positives = 11/20 (55%)
Query: 1351 DDASAENSERKEENAVTGIE 1370
DD+ E SE +EE G E
Sbjct: 1534 DDSEGEESEEEEEGEEEGSE 1553
Score = 40 (19.1 bits), Expect = 1.8e-76, Sum P(5) = 1.8e-76
Identities = 9/30 (30%), Positives = 15/30 (50%)
Query: 241 KFHPAEEVLPHSQVTKSEQNDEVPVEKHEK 270
+ +P EV P S +S +E E+ E+
Sbjct: 644 EMNPGYEVAPRSDSEESGSEEEEEEEEEEQ 673
Score = 40 (19.1 bits), Expect = 1.8e-76, Sum P(5) = 1.8e-76
Identities = 10/42 (23%), Positives = 22/42 (52%)
Query: 524 PVAVNGKVQDESAVSTEDLGERNDKMVVEDADVSLRDNEGLT 565
PV K+ D + +D+ E + + ++E+A + D G++
Sbjct: 683 PVEEKKKIPDPDS---DDVSEVDARHIIENAKQDVDDEYGVS 721
Score = 39 (18.8 bits), Expect = 2.3e-76, Sum P(5) = 2.3e-76
Identities = 7/19 (36%), Positives = 13/19 (68%)
Query: 289 ERDRKRKPEVKDEDSQKKL 307
E++R R+ +DE+ +KL
Sbjct: 523 EKERMRRLMAEDEEGYRKL 541
Score = 37 (18.1 bits), Expect = 1.8e-76, Sum P(5) = 1.8e-76
Identities = 8/16 (50%), Positives = 10/16 (62%)
Query: 206 ENTSAGVPVEGSSSCP 221
E+ S+ VP G SS P
Sbjct: 128 EHASSPVPASGPSSGP 143
>RGD|621728 [details] [associations]
symbol:Smarca4 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily a, member 4"
species:10116 "Rattus norvegicus" [GO:0000122 "negative regulation
of transcription from RNA polymerase II promoter" evidence=ISO]
[GO:0000790 "nuclear chromatin" evidence=ISO] [GO:0000792
"heterochromatin" evidence=ISO] [GO:0000902 "cell morphogenesis"
evidence=ISO] [GO:0000977 "RNA polymerase II regulatory region
sequence-specific DNA binding" evidence=ISO] [GO:0001105 "RNA
polymerase II transcription coactivator activity" evidence=ISO]
[GO:0001570 "vasculogenesis" evidence=ISO] [GO:0001701 "in utero
embryonic development" evidence=ISO] [GO:0001832 "blastocyst
growth" evidence=ISO] [GO:0001835 "blastocyst hatching"
evidence=ISO] [GO:0001889 "liver development" evidence=ISO]
[GO:0002039 "p53 binding" evidence=ISO] [GO:0003407 "neural retina
development" evidence=ISO] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=ISO] [GO:0003713
"transcription coactivator activity" evidence=ISO] [GO:0003714
"transcription corepressor activity" evidence=ISO;ISS] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISO;IDA] [GO:0005719 "nuclear euchromatin"
evidence=ISO] [GO:0005726 "perichromatin fibrils" evidence=ISO]
[GO:0006337 "nucleosome disassembly" evidence=ISO;IDA] [GO:0006338
"chromatin remodeling" evidence=ISO] [GO:0006346
"methylation-dependent chromatin silencing" evidence=ISO]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0007399 "nervous system development"
evidence=IEA;ISO] [GO:0007403 "glial cell fate determination"
evidence=ISO] [GO:0007507 "heart development" evidence=ISO]
[GO:0008094 "DNA-dependent ATPase activity" evidence=ISO]
[GO:0008134 "transcription factor binding" evidence=ISO]
[GO:0010424 "DNA methylation on cytosine within a CG sequence"
evidence=ISO] [GO:0016514 "SWI/SNF complex" evidence=ISO;IDA]
[GO:0016887 "ATPase activity" evidence=ISO] [GO:0019827 "stem cell
maintenance" evidence=ISO] [GO:0022008 "neurogenesis" evidence=ISO]
[GO:0030198 "extracellular matrix organization" evidence=ISO]
[GO:0030216 "keratinocyte differentiation" evidence=ISO]
[GO:0030308 "negative regulation of cell growth" evidence=ISO]
[GO:0030900 "forebrain development" evidence=ISO] [GO:0030902
"hindbrain development" evidence=ISO] [GO:0030957 "Tat protein
binding" evidence=ISO] [GO:0032403 "protein complex binding"
evidence=IDA] [GO:0035116 "embryonic hindlimb morphogenesis"
evidence=ISO] [GO:0035887 "aortic smooth muscle cell
differentiation" evidence=ISO] [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=IDA] [GO:0043388 "positive regulation of DNA
binding" evidence=ISO] [GO:0043923 "positive regulation by host of
viral transcription" evidence=ISO] [GO:0043966 "histone H3
acetylation" evidence=ISO] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=ISO] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=ISO]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=ISO] [GO:0047485 "protein
N-terminus binding" evidence=ISO] [GO:0048562 "embryonic organ
morphogenesis" evidence=ISO] [GO:0048730 "epidermis morphogenesis"
evidence=ISO] [GO:0050681 "androgen receptor binding" evidence=ISO]
[GO:0051091 "positive regulation of sequence-specific DNA binding
transcription factor activity" evidence=ISO] [GO:0060318
"definitive erythrocyte differentiation" evidence=ISO] [GO:0060347
"heart trabecula formation" evidence=ISO] [GO:0060766 "negative
regulation of androgen receptor signaling pathway" evidence=ISO]
[GO:0070577 "histone acetyl-lysine binding" evidence=ISO]
[GO:0071564 "npBAF complex" evidence=ISO;ISS] [GO:0071565 "nBAF
complex" evidence=ISO;ISS] [GO:0071778 "WINAC complex"
evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR006576 InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271
Pfam:PF00439 Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SMART:SM00592 SMART:SM00951 RGD:621728 GO:GO:0005524 GO:GO:0003714
GO:GO:0007399 GO:GO:0006355 GO:GO:0032403 GO:GO:0003677
GO:GO:0006351 GO:GO:0071564 GO:GO:0016514 GO:GO:0071565
GO:GO:0004386 GO:GO:0006337 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0043044 Gene3D:1.20.920.10
SUPFAM:SSF47370 PROSITE:PS00633 InterPro:IPR018359
InterPro:IPR013999 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 SMART:SM00573 PROSITE:PS51204 HOGENOM:HOG000172363
HOVERGEN:HBG056636 EMBL:AJ504723 IPI:IPI00781891 UniGene:Rn.23417
ProteinModelPortal:Q8K1P7 SMR:Q8K1P7 IntAct:Q8K1P7 STRING:Q8K1P7
PhosphoSite:Q8K1P7 PRIDE:Q8K1P7 UCSC:RGD:621728 ArrayExpress:Q8K1P7
Genevestigator:Q8K1P7 Uniprot:Q8K1P7
Length = 1613
Score = 824 (295.1 bits), Expect = 1.8e-76, Sum P(5) = 1.8e-76
Identities = 211/508 (41%), Positives = 283/508 (55%)
Query: 743 ALTEQPEE----LKGGALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSL 798
A+TE+ ++ + G L +Q++ L WL ++ + N ILADEMGLGKT+ A I+ L
Sbjct: 737 AVTERVDKQSALMVNGVLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTIALITYL 796
Query: 799 YCEFKAKLPCLVLVPLSTMPNWLAEFALWAPNLNVVEYHGCAKARAIIRQYEWHASDPDN 858
+ P L++VPLST+ NW EF WAP++ V Y G AR A P
Sbjct: 797 MEHKRINGPFLIIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAAR--------RAFVP-- 846
Query: 859 LNKKTSSYKFNVLLTTYEMILADSSHLRGVPWEVLVVDEGHRXXXXX-XXXXXXXXXXXX 917
+ S KFNVLLTTYE I+ D L + W+ ++VDEGHR
Sbjct: 847 ---QLRSGKFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVA 903
Query: 918 QHRVLLTGTPLQNNIGEMYNLLNFLQPASFPSLSSFEEKFND--LTTTQKV----EE--- 968
R+LLTGTPLQN + E++ LLNFL P F S S+FE+ FN T +KV EE
Sbjct: 904 PRRLLLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEETIL 963
Query: 969 ----LKKLVAPHMLRRLKKDAMQNIPPKTERMVPVELSSIQAEYYRAMLTKNYQILRNI- 1023
L K++ P +LRRLKK+ +P K E ++ ++S++Q YR M K +
Sbjct: 964 IIRRLHKVLRPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTDGSE 1023
Query: 1024 ----GKGVAQQSMLNIVMQLRKVCNHPYLIPGTEPD--------SGSVEFLHEMRIKASA 1071
GKG ++++N +MQLRK+CNHPY+ E G V+ L R AS
Sbjct: 1024 KDKKGKG-GTKTLMNTIMQLRKICNHPYMFQHIEESFSEHLGFTGGIVQGLDLYR--ASG 1080
Query: 1072 KLTLLHSMLKVLYKEGHRVLIFSQMTKLLDILEDYLNIEFGPKTYERVDGSVSVGDRQAA 1131
K LL +L L H+VL+F QMT L+ I+EDY G K Y R+DG+ DR
Sbjct: 1081 KFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYR-GFK-YLRLDGTTKAEDRGML 1138
Query: 1132 ITRFNQDKSR-FVFLLSTRSCGLGINLATADTVIIYDSDFNPHADIQAMNRAHRIGQSKR 1190
+ FN+ S F+FLLSTR+ GLG+NL +ADTVII+DSD+NPH D+QA +RAHRIGQ
Sbjct: 1139 LKTFNEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNE 1198
Query: 1191 LLVYRLVVRASVEERILQLAKKKLMLDQ 1218
+ V RL SVEE+IL AK KL +DQ
Sbjct: 1199 VRVLRLCTVNSVEEKILAAAKYKLNVDQ 1226
Score = 43 (20.2 bits), Expect = 1.8e-76, Sum P(5) = 1.8e-76
Identities = 9/20 (45%), Positives = 11/20 (55%)
Query: 1351 DDASAENSERKEENAVTGIE 1370
DD+ E SE +EE G E
Sbjct: 1534 DDSEGEESEEEEEGEEEGSE 1553
Score = 40 (19.1 bits), Expect = 1.8e-76, Sum P(5) = 1.8e-76
Identities = 9/30 (30%), Positives = 15/30 (50%)
Query: 241 KFHPAEEVLPHSQVTKSEQNDEVPVEKHEK 270
+ +P EV P S +S +E E+ E+
Sbjct: 644 EMNPGYEVAPRSDSEESGSEEEEEEEEEEQ 673
Score = 40 (19.1 bits), Expect = 1.8e-76, Sum P(5) = 1.8e-76
Identities = 10/42 (23%), Positives = 22/42 (52%)
Query: 524 PVAVNGKVQDESAVSTEDLGERNDKMVVEDADVSLRDNEGLT 565
PV K+ D + +D+ E + + ++E+A + D G++
Sbjct: 683 PVEEKKKIPDPDS---DDVSEVDARHIIENAKQDVDDEYGVS 721
Score = 39 (18.8 bits), Expect = 2.3e-76, Sum P(5) = 2.3e-76
Identities = 7/19 (36%), Positives = 13/19 (68%)
Query: 289 ERDRKRKPEVKDEDSQKKL 307
E++R R+ +DE+ +KL
Sbjct: 523 EKERMRRLMAEDEEGYRKL 541
Score = 37 (18.1 bits), Expect = 1.8e-76, Sum P(5) = 1.8e-76
Identities = 8/16 (50%), Positives = 10/16 (62%)
Query: 206 ENTSAGVPVEGSSSCP 221
E+ S+ VP G SS P
Sbjct: 128 EHASSPVPASGPSSGP 143
>UNIPROTKB|E2RJ89 [details] [associations]
symbol:SMARCA4 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR006576 InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271
Pfam:PF00439 Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SMART:SM00592 SMART:SM00951 GO:GO:0005524 GO:GO:0005634
GO:GO:0006355 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 KO:K11647
GeneTree:ENSGT00550000074659 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
CTD:6597 EMBL:AAEX03012414 RefSeq:XP_867683.1
Ensembl:ENSCAFT00000027907 GeneID:476710 KEGG:cfa:476710
OMA:HKPMESM Uniprot:E2RJ89
Length = 1614
Score = 824 (295.1 bits), Expect = 1.8e-76, Sum P(5) = 1.8e-76
Identities = 211/508 (41%), Positives = 283/508 (55%)
Query: 743 ALTEQPEE----LKGGALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSL 798
A+TE+ ++ + G L +Q++ L WL ++ + N ILADEMGLGKT+ A I+ L
Sbjct: 737 AVTERVDKQSALMVNGVLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTIALITYL 796
Query: 799 YCEFKAKLPCLVLVPLSTMPNWLAEFALWAPNLNVVEYHGCAKARAIIRQYEWHASDPDN 858
+ P L++VPLST+ NW EF WAP++ V Y G AR A P
Sbjct: 797 MEHKRINGPFLIIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAAR--------RAFVP-- 846
Query: 859 LNKKTSSYKFNVLLTTYEMILADSSHLRGVPWEVLVVDEGHRXXXXX-XXXXXXXXXXXX 917
+ S KFNVLLTTYE I+ D L + W+ ++VDEGHR
Sbjct: 847 ---QLRSGKFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVA 903
Query: 918 QHRVLLTGTPLQNNIGEMYNLLNFLQPASFPSLSSFEEKFND--LTTTQKV----EE--- 968
R+LLTGTPLQN + E++ LLNFL P F S S+FE+ FN T +KV EE
Sbjct: 904 PRRLLLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEETIL 963
Query: 969 ----LKKLVAPHMLRRLKKDAMQNIPPKTERMVPVELSSIQAEYYRAMLTKNYQILRNI- 1023
L K++ P +LRRLKK+ +P K E ++ ++S++Q YR M K +
Sbjct: 964 IIRRLHKVLRPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTDGSE 1023
Query: 1024 ----GKGVAQQSMLNIVMQLRKVCNHPYLIPGTEPD--------SGSVEFLHEMRIKASA 1071
GKG ++++N +MQLRK+CNHPY+ E G V+ L R AS
Sbjct: 1024 KDKKGKG-GTKTLMNTIMQLRKICNHPYMFQHIEESFSEHLGFTGGIVQGLDLYR--ASG 1080
Query: 1072 KLTLLHSMLKVLYKEGHRVLIFSQMTKLLDILEDYLNIEFGPKTYERVDGSVSVGDRQAA 1131
K LL +L L H+VL+F QMT L+ I+EDY G K Y R+DG+ DR
Sbjct: 1081 KFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYR-GFK-YLRLDGTTKAEDRGML 1138
Query: 1132 ITRFNQDKSR-FVFLLSTRSCGLGINLATADTVIIYDSDFNPHADIQAMNRAHRIGQSKR 1190
+ FN+ S F+FLLSTR+ GLG+NL +ADTVII+DSD+NPH D+QA +RAHRIGQ
Sbjct: 1139 LKTFNEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNE 1198
Query: 1191 LLVYRLVVRASVEERILQLAKKKLMLDQ 1218
+ V RL SVEE+IL AK KL +DQ
Sbjct: 1199 VRVLRLCTVNSVEEKILAAAKYKLNVDQ 1226
Score = 43 (20.2 bits), Expect = 1.8e-76, Sum P(5) = 1.8e-76
Identities = 9/20 (45%), Positives = 11/20 (55%)
Query: 1351 DDASAENSERKEENAVTGIE 1370
DD+ E SE +EE G E
Sbjct: 1535 DDSEGEESEEEEEGEEEGSE 1554
Score = 40 (19.1 bits), Expect = 1.8e-76, Sum P(5) = 1.8e-76
Identities = 9/30 (30%), Positives = 15/30 (50%)
Query: 241 KFHPAEEVLPHSQVTKSEQNDEVPVEKHEK 270
+ +P EV P S +S +E E+ E+
Sbjct: 644 EMNPGYEVAPRSDSEESGSEEEEEEEEEEQ 673
Score = 40 (19.1 bits), Expect = 1.8e-76, Sum P(5) = 1.8e-76
Identities = 10/42 (23%), Positives = 22/42 (52%)
Query: 524 PVAVNGKVQDESAVSTEDLGERNDKMVVEDADVSLRDNEGLT 565
PV K+ D + +D+ E + + ++E+A + D G++
Sbjct: 683 PVEEKKKIPDPDS---DDVSEVDARHIIENAKQDVDDEYGVS 721
Score = 39 (18.8 bits), Expect = 2.3e-76, Sum P(5) = 2.3e-76
Identities = 7/19 (36%), Positives = 13/19 (68%)
Query: 289 ERDRKRKPEVKDEDSQKKL 307
E++R R+ +DE+ +KL
Sbjct: 523 EKERMRRLMAEDEEGYRKL 541
Score = 37 (18.1 bits), Expect = 1.8e-76, Sum P(5) = 1.8e-76
Identities = 8/16 (50%), Positives = 10/16 (62%)
Query: 206 ENTSAGVPVEGSSSCP 221
E+ S+ VP G SS P
Sbjct: 128 EHASSPVPASGPSSGP 143
>UNIPROTKB|G3V790 [details] [associations]
symbol:Smarca4 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily a, member 4, isoform
CRA_b" species:10116 "Rattus norvegicus" [GO:0000122 "negative
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0000792 "heterochromatin" evidence=IEA]
[GO:0000902 "cell morphogenesis" evidence=IEA] [GO:0000977 "RNA
polymerase II regulatory region sequence-specific DNA binding"
evidence=IEA] [GO:0001570 "vasculogenesis" evidence=IEA]
[GO:0001832 "blastocyst growth" evidence=IEA] [GO:0001835
"blastocyst hatching" evidence=IEA] [GO:0001889 "liver development"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005719 "nuclear euchromatin"
evidence=IEA] [GO:0005726 "perichromatin fibrils" evidence=IEA]
[GO:0006338 "chromatin remodeling" evidence=IEA] [GO:0006346
"methylation-dependent chromatin silencing" evidence=IEA]
[GO:0007403 "glial cell fate determination" evidence=IEA]
[GO:0008134 "transcription factor binding" evidence=IEA]
[GO:0010424 "DNA methylation on cytosine within a CG sequence"
evidence=IEA] [GO:0019827 "stem cell maintenance" evidence=IEA]
[GO:0030198 "extracellular matrix organization" evidence=IEA]
[GO:0030216 "keratinocyte differentiation" evidence=IEA]
[GO:0030900 "forebrain development" evidence=IEA] [GO:0030902
"hindbrain development" evidence=IEA] [GO:0035116 "embryonic
hindlimb morphogenesis" evidence=IEA] [GO:0035887 "aortic smooth
muscle cell differentiation" evidence=IEA] [GO:0043388 "positive
regulation of DNA binding" evidence=IEA] [GO:0043966 "histone H3
acetylation" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0048562 "embryonic organ morphogenesis" evidence=IEA]
[GO:0048730 "epidermis morphogenesis" evidence=IEA] [GO:0060318
"definitive erythrocyte differentiation" evidence=IEA] [GO:0060347
"heart trabecula formation" evidence=IEA] [GO:0071564 "npBAF
complex" evidence=IEA] [GO:0071565 "nBAF complex" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR006576 InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271
Pfam:PF00439 Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SMART:SM00592 SMART:SM00951 RGD:621728 GO:GO:0005524 GO:GO:0005634
GO:GO:0006355 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 GeneTree:ENSGT00550000074659
InterPro:IPR013999 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 SMART:SM00573 PROSITE:PS51204 EMBL:CH473993
UniGene:Rn.23417 Ensembl:ENSRNOT00000013165 Uniprot:G3V790
Length = 1614
Score = 824 (295.1 bits), Expect = 1.8e-76, Sum P(5) = 1.8e-76
Identities = 211/508 (41%), Positives = 283/508 (55%)
Query: 743 ALTEQPEE----LKGGALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSL 798
A+TE+ ++ + G L +Q++ L WL ++ + N ILADEMGLGKT+ A I+ L
Sbjct: 737 AVTERVDKQSALMVNGVLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTIALITYL 796
Query: 799 YCEFKAKLPCLVLVPLSTMPNWLAEFALWAPNLNVVEYHGCAKARAIIRQYEWHASDPDN 858
+ P L++VPLST+ NW EF WAP++ V Y G AR A P
Sbjct: 797 MEHKRINGPFLIIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAAR--------RAFVP-- 846
Query: 859 LNKKTSSYKFNVLLTTYEMILADSSHLRGVPWEVLVVDEGHRXXXXX-XXXXXXXXXXXX 917
+ S KFNVLLTTYE I+ D L + W+ ++VDEGHR
Sbjct: 847 ---QLRSGKFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVA 903
Query: 918 QHRVLLTGTPLQNNIGEMYNLLNFLQPASFPSLSSFEEKFND--LTTTQKV----EE--- 968
R+LLTGTPLQN + E++ LLNFL P F S S+FE+ FN T +KV EE
Sbjct: 904 PRRLLLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEETIL 963
Query: 969 ----LKKLVAPHMLRRLKKDAMQNIPPKTERMVPVELSSIQAEYYRAMLTKNYQILRNI- 1023
L K++ P +LRRLKK+ +P K E ++ ++S++Q YR M K +
Sbjct: 964 IIRRLHKVLRPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTDGSE 1023
Query: 1024 ----GKGVAQQSMLNIVMQLRKVCNHPYLIPGTEPD--------SGSVEFLHEMRIKASA 1071
GKG ++++N +MQLRK+CNHPY+ E G V+ L R AS
Sbjct: 1024 KDKKGKG-GTKTLMNTIMQLRKICNHPYMFQHIEESFSEHLGFTGGIVQGLDLYR--ASG 1080
Query: 1072 KLTLLHSMLKVLYKEGHRVLIFSQMTKLLDILEDYLNIEFGPKTYERVDGSVSVGDRQAA 1131
K LL +L L H+VL+F QMT L+ I+EDY G K Y R+DG+ DR
Sbjct: 1081 KFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYR-GFK-YLRLDGTTKAEDRGML 1138
Query: 1132 ITRFNQDKSR-FVFLLSTRSCGLGINLATADTVIIYDSDFNPHADIQAMNRAHRIGQSKR 1190
+ FN+ S F+FLLSTR+ GLG+NL +ADTVII+DSD+NPH D+QA +RAHRIGQ
Sbjct: 1139 LKTFNEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNE 1198
Query: 1191 LLVYRLVVRASVEERILQLAKKKLMLDQ 1218
+ V RL SVEE+IL AK KL +DQ
Sbjct: 1199 VRVLRLCTVNSVEEKILAAAKYKLNVDQ 1226
Score = 43 (20.2 bits), Expect = 1.8e-76, Sum P(5) = 1.8e-76
Identities = 9/20 (45%), Positives = 11/20 (55%)
Query: 1351 DDASAENSERKEENAVTGIE 1370
DD+ E SE +EE G E
Sbjct: 1535 DDSEGEESEEEEEGEEEGSE 1554
Score = 40 (19.1 bits), Expect = 1.8e-76, Sum P(5) = 1.8e-76
Identities = 9/30 (30%), Positives = 15/30 (50%)
Query: 241 KFHPAEEVLPHSQVTKSEQNDEVPVEKHEK 270
+ +P EV P S +S +E E+ E+
Sbjct: 644 EMNPGYEVAPRSDSEESGSEEEEEEEEEEQ 673
Score = 40 (19.1 bits), Expect = 1.8e-76, Sum P(5) = 1.8e-76
Identities = 10/42 (23%), Positives = 22/42 (52%)
Query: 524 PVAVNGKVQDESAVSTEDLGERNDKMVVEDADVSLRDNEGLT 565
PV K+ D + +D+ E + + ++E+A + D G++
Sbjct: 683 PVEEKKKIPDPDS---DDVSEVDARHIIENAKQDVDDEYGVS 721
Score = 39 (18.8 bits), Expect = 2.3e-76, Sum P(5) = 2.3e-76
Identities = 7/19 (36%), Positives = 13/19 (68%)
Query: 289 ERDRKRKPEVKDEDSQKKL 307
E++R R+ +DE+ +KL
Sbjct: 523 EKERMRRLMAEDEEGYRKL 541
Score = 37 (18.1 bits), Expect = 1.8e-76, Sum P(5) = 1.8e-76
Identities = 8/16 (50%), Positives = 10/16 (62%)
Query: 206 ENTSAGVPVEGSSSCP 221
E+ S+ VP G SS P
Sbjct: 128 EHASSPVPASGPSSGP 143
>UNIPROTKB|F1M6Y4 [details] [associations]
symbol:Smarca4 "Transcription activator BRG1" species:10116
"Rattus norvegicus" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0000792 "heterochromatin" evidence=IEA] [GO:0000902 "cell
morphogenesis" evidence=IEA] [GO:0000977 "RNA polymerase II
regulatory region sequence-specific DNA binding" evidence=IEA]
[GO:0001570 "vasculogenesis" evidence=IEA] [GO:0001832 "blastocyst
growth" evidence=IEA] [GO:0001835 "blastocyst hatching"
evidence=IEA] [GO:0001889 "liver development" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005719 "nuclear euchromatin" evidence=IEA] [GO:0005726
"perichromatin fibrils" evidence=IEA] [GO:0006338 "chromatin
remodeling" evidence=IEA] [GO:0006346 "methylation-dependent
chromatin silencing" evidence=IEA] [GO:0007403 "glial cell fate
determination" evidence=IEA] [GO:0008134 "transcription factor
binding" evidence=IEA] [GO:0010424 "DNA methylation on cytosine
within a CG sequence" evidence=IEA] [GO:0019827 "stem cell
maintenance" evidence=IEA] [GO:0030198 "extracellular matrix
organization" evidence=IEA] [GO:0030216 "keratinocyte
differentiation" evidence=IEA] [GO:0030900 "forebrain development"
evidence=IEA] [GO:0030902 "hindbrain development" evidence=IEA]
[GO:0035116 "embryonic hindlimb morphogenesis" evidence=IEA]
[GO:0035887 "aortic smooth muscle cell differentiation"
evidence=IEA] [GO:0043388 "positive regulation of DNA binding"
evidence=IEA] [GO:0043966 "histone H3 acetylation" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0048562 "embryonic organ
morphogenesis" evidence=IEA] [GO:0048730 "epidermis morphogenesis"
evidence=IEA] [GO:0060318 "definitive erythrocyte differentiation"
evidence=IEA] [GO:0060347 "heart trabecula formation" evidence=IEA]
[GO:0071564 "npBAF complex" evidence=IEA] [GO:0071565 "nBAF
complex" evidence=IEA] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 InterPro:IPR006576 InterPro:IPR014978
Pfam:PF00176 Pfam:PF00271 Pfam:PF00439 Pfam:PF07533 Pfam:PF08880
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 SMART:SM00592 SMART:SM00951 RGD:621728 GO:GO:0005524
GO:GO:0030216 GO:GO:0045944 GO:GO:0030198 GO:GO:0030900
GO:GO:0001889 GO:GO:0003682 GO:GO:0006338 GO:GO:0000122
GO:GO:0071564 GO:GO:0071565 GO:GO:0000902 GO:GO:0004386
GO:GO:0001570 GO:GO:0035116 GO:GO:0005719 GO:GO:0030902
GO:GO:0048730 GO:GO:0000977 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0019827 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 GO:GO:0000792 GO:GO:0060347
GO:GO:0043966 GO:GO:0043388 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
GO:GO:0001835 GO:GO:0007403 GO:GO:0006346 GO:GO:0010424
GO:GO:0060318 GO:GO:0048562 GO:GO:0001832 GO:GO:0005726
GO:GO:0035887 IPI:IPI00951882 Ensembl:ENSRNOT00000060927
ArrayExpress:F1M6Y4 Uniprot:F1M6Y4
Length = 1618
Score = 824 (295.1 bits), Expect = 1.9e-76, Sum P(5) = 1.9e-76
Identities = 211/508 (41%), Positives = 283/508 (55%)
Query: 743 ALTEQPEE----LKGGALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSL 798
A+TE+ ++ + G L +Q++ L WL ++ + N ILADEMGLGKT+ A I+ L
Sbjct: 737 AVTERVDKQSALMVNGVLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTIALITYL 796
Query: 799 YCEFKAKLPCLVLVPLSTMPNWLAEFALWAPNLNVVEYHGCAKARAIIRQYEWHASDPDN 858
+ P L++VPLST+ NW EF WAP++ V Y G AR A P
Sbjct: 797 MEHKRINGPFLIIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAAR--------RAFVP-- 846
Query: 859 LNKKTSSYKFNVLLTTYEMILADSSHLRGVPWEVLVVDEGHRXXXXX-XXXXXXXXXXXX 917
+ S KFNVLLTTYE I+ D L + W+ ++VDEGHR
Sbjct: 847 ---QLRSGKFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVA 903
Query: 918 QHRVLLTGTPLQNNIGEMYNLLNFLQPASFPSLSSFEEKFND--LTTTQKV----EE--- 968
R+LLTGTPLQN + E++ LLNFL P F S S+FE+ FN T +KV EE
Sbjct: 904 PRRLLLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEETIL 963
Query: 969 ----LKKLVAPHMLRRLKKDAMQNIPPKTERMVPVELSSIQAEYYRAMLTKNYQILRNI- 1023
L K++ P +LRRLKK+ +P K E ++ ++S++Q YR M K +
Sbjct: 964 IIRRLHKVLRPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTDGSE 1023
Query: 1024 ----GKGVAQQSMLNIVMQLRKVCNHPYLIPGTEPD--------SGSVEFLHEMRIKASA 1071
GKG ++++N +MQLRK+CNHPY+ E G V+ L R AS
Sbjct: 1024 KDKKGKG-GTKTLMNTIMQLRKICNHPYMFQHIEESFSEHLGFTGGIVQGLDLYR--ASG 1080
Query: 1072 KLTLLHSMLKVLYKEGHRVLIFSQMTKLLDILEDYLNIEFGPKTYERVDGSVSVGDRQAA 1131
K LL +L L H+VL+F QMT L+ I+EDY G K Y R+DG+ DR
Sbjct: 1081 KFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYR-GFK-YLRLDGTTKAEDRGML 1138
Query: 1132 ITRFNQDKSR-FVFLLSTRSCGLGINLATADTVIIYDSDFNPHADIQAMNRAHRIGQSKR 1190
+ FN+ S F+FLLSTR+ GLG+NL +ADTVII+DSD+NPH D+QA +RAHRIGQ
Sbjct: 1139 LKTFNEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNE 1198
Query: 1191 LLVYRLVVRASVEERILQLAKKKLMLDQ 1218
+ V RL SVEE+IL AK KL +DQ
Sbjct: 1199 VRVLRLCTVNSVEEKILAAAKYKLNVDQ 1226
Score = 43 (20.2 bits), Expect = 1.9e-76, Sum P(5) = 1.9e-76
Identities = 9/20 (45%), Positives = 11/20 (55%)
Query: 1351 DDASAENSERKEENAVTGIE 1370
DD+ E SE +EE G E
Sbjct: 1539 DDSEGEESEEEEEGEEEGSE 1558
Score = 40 (19.1 bits), Expect = 1.9e-76, Sum P(5) = 1.9e-76
Identities = 9/30 (30%), Positives = 15/30 (50%)
Query: 241 KFHPAEEVLPHSQVTKSEQNDEVPVEKHEK 270
+ +P EV P S +S +E E+ E+
Sbjct: 644 EMNPGYEVAPRSDSEESGSEEEEEEEEEEQ 673
Score = 40 (19.1 bits), Expect = 1.9e-76, Sum P(5) = 1.9e-76
Identities = 10/42 (23%), Positives = 22/42 (52%)
Query: 524 PVAVNGKVQDESAVSTEDLGERNDKMVVEDADVSLRDNEGLT 565
PV K+ D + +D+ E + + ++E+A + D G++
Sbjct: 683 PVEEKKKIPDPDS---DDVSEVDARHIIENAKQDVDDEYGVS 721
Score = 39 (18.8 bits), Expect = 2.4e-76, Sum P(5) = 2.4e-76
Identities = 7/19 (36%), Positives = 13/19 (68%)
Query: 289 ERDRKRKPEVKDEDSQKKL 307
E++R R+ +DE+ +KL
Sbjct: 523 EKERMRRLMAEDEEGYRKL 541
Score = 37 (18.1 bits), Expect = 1.9e-76, Sum P(5) = 1.9e-76
Identities = 8/16 (50%), Positives = 10/16 (62%)
Query: 206 ENTSAGVPVEGSSSCP 221
E+ S+ VP G SS P
Sbjct: 128 EHASSPVPASGPSSGP 143
>UNIPROTKB|P51532 [details] [associations]
symbol:SMARCA4 "Transcription activator BRG1" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0007399 "nervous system development"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0047485 "protein N-terminus binding" evidence=IPI] [GO:0016514
"SWI/SNF complex" evidence=IDA] [GO:0003714 "transcription
corepressor activity" evidence=IDA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0071564 "npBAF complex" evidence=ISS;IDA]
[GO:0071565 "nBAF complex" evidence=ISS] [GO:0006338 "chromatin
remodeling" evidence=IC;IDA] [GO:0001105 "RNA polymerase II
transcription coactivator activity" evidence=IDA] [GO:0000790
"nuclear chromatin" evidence=IDA] [GO:0071778 "WINAC complex"
evidence=IDA] [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=IMP;IDA] [GO:0030308 "negative regulation
of cell growth" evidence=IMP] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IGI;IDA]
[GO:0060766 "negative regulation of androgen receptor signaling
pathway" evidence=IMP] [GO:0050681 "androgen receptor binding"
evidence=IPI] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IGI] [GO:0045749 "negative regulation of S phase of
mitotic cell cycle" evidence=TAS] [GO:0070577 "histone
acetyl-lysine binding" evidence=IDA] [GO:0051091 "positive
regulation of sequence-specific DNA binding transcription factor
activity" evidence=IDA] [GO:0002039 "p53 binding" evidence=IPI]
[GO:0000122 "negative regulation of transcription from RNA
polymerase II promoter" evidence=TAS] [GO:0003713 "transcription
coactivator activity" evidence=IMP;NAS] [GO:0006357 "regulation of
transcription from RNA polymerase II promoter" evidence=NAS]
[GO:0006337 "nucleosome disassembly" evidence=IDA] [GO:0043923
"positive regulation by host of viral transcription" evidence=IMP]
[GO:0030957 "Tat protein binding" evidence=IPI] [GO:0003407 "neural
retina development" evidence=IEP] [GO:0045893 "positive regulation
of transcription, DNA-dependent" evidence=IMP] InterPro:IPR000330
InterPro:IPR001487 InterPro:IPR001650 InterPro:IPR006576
InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503 PROSITE:PS50014
PROSITE:PS51194 SMART:SM00297 SMART:SM00490 SMART:SM00592
SMART:SM00951 GO:GO:0005524 GO:GO:0003714 GO:GO:0007399
GO:GO:0051091 GO:GO:0030308 GO:GO:0003677 GO:GO:0006338
GO:GO:0000122 GO:GO:0000790 GO:GO:0071564 GO:GO:0016514
GO:GO:0003407 GO:GO:0071565 GO:GO:0004386 EMBL:CH471106
GO:GO:0001105 GO:GO:0045749 Orphanet:1465 GO:GO:0006337
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
Gene3D:1.20.920.10 SUPFAM:SSF47370 PROSITE:PS00633 GO:GO:0070577
InterPro:IPR018359 GO:GO:0071778 KO:K11647 InterPro:IPR013999
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 SMART:SM00573
PROSITE:PS51204 EMBL:AC011442 GO:GO:0008094 GO:GO:0060766
GO:GO:0043923 EMBL:AC011485 HOGENOM:HOG000172363 HOVERGEN:HBG056636
CTD:6597 EMBL:U29175 EMBL:D26156 EMBL:AF254822 EMBL:EU430756
EMBL:EU430757 EMBL:EU430758 EMBL:EU430759 EMBL:AC006127
IPI:IPI00293426 IPI:IPI00900285 IPI:IPI00900328 IPI:IPI00900338
IPI:IPI01016040 PIR:S45252 RefSeq:NP_001122316.1
RefSeq:NP_001122317.1 RefSeq:NP_001122318.1 RefSeq:NP_001122319.1
RefSeq:NP_001122320.1 RefSeq:NP_003063.2 UniGene:Hs.327527 PDB:2GRC
PDB:2H60 PDB:3UVD PDBsum:2GRC PDBsum:2H60 PDBsum:3UVD
ProteinModelPortal:P51532 SMR:P51532 DIP:DIP-24249N IntAct:P51532
MINT:MINT-204078 STRING:P51532 PhosphoSite:P51532 DMDM:116242792
PaxDb:P51532 PRIDE:P51532 Ensembl:ENST00000344626
Ensembl:ENST00000413806 Ensembl:ENST00000429416
Ensembl:ENST00000444061 Ensembl:ENST00000450717
Ensembl:ENST00000541122 GeneID:6597 KEGG:hsa:6597 UCSC:uc002mqf.4
GeneCards:GC19P011071 HGNC:HGNC:11100 HPA:CAB004208 MIM:603254
MIM:613325 MIM:614609 neXtProt:NX_P51532 Orphanet:231108
PharmGKB:PA35950 ChiTaRS:SMARCA4 EvolutionaryTrace:P51532
GenomeRNAi:6597 NextBio:25661 ArrayExpress:P51532 Bgee:P51532
CleanEx:HS_SMARCA4 Genevestigator:P51532 GermOnline:ENSG00000127616
Uniprot:P51532
Length = 1647
Score = 824 (295.1 bits), Expect = 2.5e-76, Sum P(5) = 2.5e-76
Identities = 211/508 (41%), Positives = 283/508 (55%)
Query: 743 ALTEQPEE----LKGGALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSL 798
A+TE+ ++ + G L +Q++ L WL ++ + N ILADEMGLGKT+ A I+ L
Sbjct: 737 AVTERVDKQSALMVNGVLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTIALITYL 796
Query: 799 YCEFKAKLPCLVLVPLSTMPNWLAEFALWAPNLNVVEYHGCAKARAIIRQYEWHASDPDN 858
+ P L++VPLST+ NW EF WAP++ V Y G AR A P
Sbjct: 797 MEHKRINGPFLIIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAAR--------RAFVP-- 846
Query: 859 LNKKTSSYKFNVLLTTYEMILADSSHLRGVPWEVLVVDEGHRXXXXX-XXXXXXXXXXXX 917
+ S KFNVLLTTYE I+ D L + W+ ++VDEGHR
Sbjct: 847 ---QLRSGKFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVA 903
Query: 918 QHRVLLTGTPLQNNIGEMYNLLNFLQPASFPSLSSFEEKFND--LTTTQKV----EE--- 968
R+LLTGTPLQN + E++ LLNFL P F S S+FE+ FN T +KV EE
Sbjct: 904 PRRLLLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEETIL 963
Query: 969 ----LKKLVAPHMLRRLKKDAMQNIPPKTERMVPVELSSIQAEYYRAMLTKNYQILRNI- 1023
L K++ P +LRRLKK+ +P K E ++ ++S++Q YR M K +
Sbjct: 964 IIRRLHKVLRPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTDGSE 1023
Query: 1024 ----GKGVAQQSMLNIVMQLRKVCNHPYLIPGTEPD--------SGSVEFLHEMRIKASA 1071
GKG ++++N +MQLRK+CNHPY+ E G V+ L R AS
Sbjct: 1024 KDKKGKG-GTKTLMNTIMQLRKICNHPYMFQHIEESFSEHLGFTGGIVQGLDLYR--ASG 1080
Query: 1072 KLTLLHSMLKVLYKEGHRVLIFSQMTKLLDILEDYLNIEFGPKTYERVDGSVSVGDRQAA 1131
K LL +L L H+VL+F QMT L+ I+EDY G K Y R+DG+ DR
Sbjct: 1081 KFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYR-GFK-YLRLDGTTKAEDRGML 1138
Query: 1132 ITRFNQDKSR-FVFLLSTRSCGLGINLATADTVIIYDSDFNPHADIQAMNRAHRIGQSKR 1190
+ FN+ S F+FLLSTR+ GLG+NL +ADTVII+DSD+NPH D+QA +RAHRIGQ
Sbjct: 1139 LKTFNEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNE 1198
Query: 1191 LLVYRLVVRASVEERILQLAKKKLMLDQ 1218
+ V RL SVEE+IL AK KL +DQ
Sbjct: 1199 VRVLRLCTVNSVEEKILAAAKYKLNVDQ 1226
Score = 43 (20.2 bits), Expect = 2.5e-76, Sum P(5) = 2.5e-76
Identities = 9/20 (45%), Positives = 11/20 (55%)
Query: 1351 DDASAENSERKEENAVTGIE 1370
DD+ E SE +EE G E
Sbjct: 1568 DDSEGEESEEEEEGEEEGSE 1587
Score = 40 (19.1 bits), Expect = 2.5e-76, Sum P(5) = 2.5e-76
Identities = 9/30 (30%), Positives = 15/30 (50%)
Query: 241 KFHPAEEVLPHSQVTKSEQNDEVPVEKHEK 270
+ +P EV P S +S +E E+ E+
Sbjct: 644 EMNPGYEVAPRSDSEESGSEEEEEEEEEEQ 673
Score = 40 (19.1 bits), Expect = 2.5e-76, Sum P(5) = 2.5e-76
Identities = 10/42 (23%), Positives = 22/42 (52%)
Query: 524 PVAVNGKVQDESAVSTEDLGERNDKMVVEDADVSLRDNEGLT 565
PV K+ D + +D+ E + + ++E+A + D G++
Sbjct: 683 PVEEKKKIPDPDS---DDVSEVDARHIIENAKQDVDDEYGVS 721
Score = 39 (18.8 bits), Expect = 3.1e-76, Sum P(5) = 3.1e-76
Identities = 7/19 (36%), Positives = 13/19 (68%)
Query: 289 ERDRKRKPEVKDEDSQKKL 307
E++R R+ +DE+ +KL
Sbjct: 523 EKERMRRLMAEDEEGYRKL 541
Score = 37 (18.1 bits), Expect = 2.5e-76, Sum P(5) = 2.5e-76
Identities = 8/16 (50%), Positives = 10/16 (62%)
Query: 206 ENTSAGVPVEGSSSCP 221
E+ S+ VP G SS P
Sbjct: 128 EHASSPVPASGPSSGP 143
>UNIPROTKB|Q9HBD4 [details] [associations]
symbol:SMARCA4 "SMARCA4 isoform 2" species:9606 "Homo
sapiens" [GO:0004386 "helicase activity" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0000792 "heterochromatin" evidence=IEA] [GO:0000902 "cell
morphogenesis" evidence=IEA] [GO:0000977 "RNA polymerase II
regulatory region sequence-specific DNA binding" evidence=IEA]
[GO:0001570 "vasculogenesis" evidence=IEA] [GO:0001832 "blastocyst
growth" evidence=IEA] [GO:0001835 "blastocyst hatching"
evidence=IEA] [GO:0001889 "liver development" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0005719 "nuclear
euchromatin" evidence=IEA] [GO:0005726 "perichromatin fibrils"
evidence=IEA] [GO:0006338 "chromatin remodeling" evidence=IEA]
[GO:0006346 "methylation-dependent chromatin silencing"
evidence=IEA] [GO:0007403 "glial cell fate determination"
evidence=IEA] [GO:0008134 "transcription factor binding"
evidence=IEA] [GO:0010424 "DNA methylation on cytosine within a CG
sequence" evidence=IEA] [GO:0019827 "stem cell maintenance"
evidence=IEA] [GO:0030198 "extracellular matrix organization"
evidence=IEA] [GO:0030216 "keratinocyte differentiation"
evidence=IEA] [GO:0030900 "forebrain development" evidence=IEA]
[GO:0030902 "hindbrain development" evidence=IEA] [GO:0035116
"embryonic hindlimb morphogenesis" evidence=IEA] [GO:0035887
"aortic smooth muscle cell differentiation" evidence=IEA]
[GO:0043388 "positive regulation of DNA binding" evidence=IEA]
[GO:0043966 "histone H3 acetylation" evidence=IEA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0048562 "embryonic organ morphogenesis"
evidence=IEA] [GO:0048730 "epidermis morphogenesis" evidence=IEA]
[GO:0060318 "definitive erythrocyte differentiation" evidence=IEA]
[GO:0060347 "heart trabecula formation" evidence=IEA] [GO:0071564
"npBAF complex" evidence=IEA] [GO:0071565 "nBAF complex"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 InterPro:IPR006576 InterPro:IPR014978
Pfam:PF00176 Pfam:PF00271 Pfam:PF00439 Pfam:PF07533 Pfam:PF08880
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 SMART:SM00592 SMART:SM00951 GO:GO:0005524
GO:GO:0030216 GO:GO:0045944 GO:GO:0030198 GO:GO:0030900
GO:GO:0001889 GO:GO:0003682 GO:GO:0006338 GO:GO:0000122
GO:GO:0071564 GO:GO:0071565 GO:GO:0000902 GO:GO:0004386
GO:GO:0001570 GO:GO:0035116 GO:GO:0005719 GO:GO:0030902
EMBL:CH471106 GO:GO:0048730 GO:GO:0000977 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0019827 Gene3D:1.20.920.10
SUPFAM:SSF47370 PROSITE:PS00633 InterPro:IPR018359 GO:GO:0000792
GO:GO:0060347 GO:GO:0043966 GO:GO:0043388 KO:K11647
InterPro:IPR013999 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 SMART:SM00573 PROSITE:PS51204 EMBL:AC011442
GO:GO:0001835 GO:GO:0007403 GO:GO:0006346 GO:GO:0010424
GO:GO:0060318 GO:GO:0048562 GO:GO:0001832 EMBL:AC011485
GO:GO:0005726 HOGENOM:HOG000172363 HOVERGEN:HBG056636 GO:GO:0035887
CTD:6597 EMBL:AF254822 EMBL:AC006127 UniGene:Hs.327527 GeneID:6597
KEGG:hsa:6597 HGNC:HGNC:11100 PharmGKB:PA35950 ChiTaRS:SMARCA4
GenomeRNAi:6597 NextBio:25661 IPI:IPI00900269 RefSeq:NP_001122321.1
SMR:Q9HBD4 STRING:Q9HBD4 Ensembl:ENST00000358026 UCSC:uc010dxo.3
Uniprot:Q9HBD4
Length = 1679
Score = 824 (295.1 bits), Expect = 3.3e-76, Sum P(5) = 3.3e-76
Identities = 211/508 (41%), Positives = 283/508 (55%)
Query: 743 ALTEQPEE----LKGGALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSL 798
A+TE+ ++ + G L +Q++ L WL ++ + N ILADEMGLGKT+ A I+ L
Sbjct: 737 AVTERVDKQSALMVNGVLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTIALITYL 796
Query: 799 YCEFKAKLPCLVLVPLSTMPNWLAEFALWAPNLNVVEYHGCAKARAIIRQYEWHASDPDN 858
+ P L++VPLST+ NW EF WAP++ V Y G AR A P
Sbjct: 797 MEHKRINGPFLIIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAAR--------RAFVP-- 846
Query: 859 LNKKTSSYKFNVLLTTYEMILADSSHLRGVPWEVLVVDEGHRXXXXX-XXXXXXXXXXXX 917
+ S KFNVLLTTYE I+ D L + W+ ++VDEGHR
Sbjct: 847 ---QLRSGKFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVA 903
Query: 918 QHRVLLTGTPLQNNIGEMYNLLNFLQPASFPSLSSFEEKFND--LTTTQKV----EE--- 968
R+LLTGTPLQN + E++ LLNFL P F S S+FE+ FN T +KV EE
Sbjct: 904 PRRLLLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEETIL 963
Query: 969 ----LKKLVAPHMLRRLKKDAMQNIPPKTERMVPVELSSIQAEYYRAMLTKNYQILRNI- 1023
L K++ P +LRRLKK+ +P K E ++ ++S++Q YR M K +
Sbjct: 964 IIRRLHKVLRPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTDGSE 1023
Query: 1024 ----GKGVAQQSMLNIVMQLRKVCNHPYLIPGTEPD--------SGSVEFLHEMRIKASA 1071
GKG ++++N +MQLRK+CNHPY+ E G V+ L R AS
Sbjct: 1024 KDKKGKG-GTKTLMNTIMQLRKICNHPYMFQHIEESFSEHLGFTGGIVQGLDLYR--ASG 1080
Query: 1072 KLTLLHSMLKVLYKEGHRVLIFSQMTKLLDILEDYLNIEFGPKTYERVDGSVSVGDRQAA 1131
K LL +L L H+VL+F QMT L+ I+EDY G K Y R+DG+ DR
Sbjct: 1081 KFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYR-GFK-YLRLDGTTKAEDRGML 1138
Query: 1132 ITRFNQDKSR-FVFLLSTRSCGLGINLATADTVIIYDSDFNPHADIQAMNRAHRIGQSKR 1190
+ FN+ S F+FLLSTR+ GLG+NL +ADTVII+DSD+NPH D+QA +RAHRIGQ
Sbjct: 1139 LKTFNEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNE 1198
Query: 1191 LLVYRLVVRASVEERILQLAKKKLMLDQ 1218
+ V RL SVEE+IL AK KL +DQ
Sbjct: 1199 VRVLRLCTVNSVEEKILAAAKYKLNVDQ 1226
Score = 43 (20.2 bits), Expect = 3.3e-76, Sum P(5) = 3.3e-76
Identities = 9/20 (45%), Positives = 11/20 (55%)
Query: 1351 DDASAENSERKEENAVTGIE 1370
DD+ E SE +EE G E
Sbjct: 1600 DDSEGEESEEEEEGEEEGSE 1619
Score = 40 (19.1 bits), Expect = 3.3e-76, Sum P(5) = 3.3e-76
Identities = 9/30 (30%), Positives = 15/30 (50%)
Query: 241 KFHPAEEVLPHSQVTKSEQNDEVPVEKHEK 270
+ +P EV P S +S +E E+ E+
Sbjct: 644 EMNPGYEVAPRSDSEESGSEEEEEEEEEEQ 673
Score = 40 (19.1 bits), Expect = 3.3e-76, Sum P(5) = 3.3e-76
Identities = 10/42 (23%), Positives = 22/42 (52%)
Query: 524 PVAVNGKVQDESAVSTEDLGERNDKMVVEDADVSLRDNEGLT 565
PV K+ D + +D+ E + + ++E+A + D G++
Sbjct: 683 PVEEKKKIPDPDS---DDVSEVDARHIIENAKQDVDDEYGVS 721
Score = 39 (18.8 bits), Expect = 4.2e-76, Sum P(5) = 4.2e-76
Identities = 7/19 (36%), Positives = 13/19 (68%)
Query: 289 ERDRKRKPEVKDEDSQKKL 307
E++R R+ +DE+ +KL
Sbjct: 523 EKERMRRLMAEDEEGYRKL 541
Score = 37 (18.1 bits), Expect = 3.3e-76, Sum P(5) = 3.3e-76
Identities = 8/16 (50%), Positives = 10/16 (62%)
Query: 206 ENTSAGVPVEGSSSCP 221
E+ S+ VP G SS P
Sbjct: 128 EHASSPVPASGPSSGP 143
>DICTYBASE|DDB_G0271052 [details] [associations]
symbol:snf2b "SNF2-related protein Snf2a"
species:44689 "Dictyostelium discoideum" [GO:0016818 "hydrolase
activity, acting on acid anhydrides, in phosphorus-containing
anhydrides" evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA;ISS] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=ISS] [GO:0005654 "nucleoplasm" evidence=ISS]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SMART:SM00951 dictyBase:DDB_G0271052 GO:GO:0005524 GO:GO:0005654
EMBL:AAFI02000005 GO:GO:0003677 GO:GO:0006357 GO:GO:0004386
InterPro:IPR011050 SUPFAM:SSF51126 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 SUPFAM:SSF47370
KO:K11647 InterPro:IPR014012 PROSITE:PS51204 RefSeq:XP_646649.1
ProteinModelPortal:Q55C32 EnsemblProtists:DDB0220695 GeneID:8617621
KEGG:ddi:DDB_G0271052 InParanoid:Q55C32 OMA:NINDNPN Uniprot:Q55C32
Length = 3247
Score = 827 (296.2 bits), Expect = 7.5e-76, Sum P(3) = 7.5e-76
Identities = 207/521 (39%), Positives = 292/521 (56%)
Query: 744 LTEQPEELKGGALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFK 803
+ EQP L+GG L P+Q++ L W+ ++ N ILADEMGLGKT+ A +S L K
Sbjct: 1699 IIEQPALLEGGKLKPYQMQGLQWMVSLYNNKLNGILADEMGLGKTIQTIALVSYLIEVKK 1758
Query: 804 AKLPCLVLVPLSTMPNWLAEFALWAPNLNVVEYHGCAKARAIIRQYEWHASDPDNLNKKT 863
P LV+VPLST+ NW EF+ WAP + V Y+G AR ++E + P
Sbjct: 1759 NNGPFLVVVPLSTLSNWGQEFSKWAPKVKRVLYYGDKPARK--SKFEEFIA-PG------ 1809
Query: 864 SSYKFNVLLTTYEMILADSSHLRGVPWEVLVVDEGHRXXXXXXXXXXXXXXX-XXQHRVL 922
+FN ++TTYE I+ D + L + W L+VDEGHR ++R+L
Sbjct: 1810 ---QFNAVVTTYEYIIKDKNALSKIKWNYLIVDEGHRMKNYTSKLSIILGTSYSSRYRLL 1866
Query: 923 LTGTPLQNNIGEMYNLLNFLQPASFPSLSSFEEKFND--LTTTQKVE-----------EL 969
LTGTPLQN++ E++ LLNFL P F + FE+ FN T +K+E L
Sbjct: 1867 LTGTPLQNSLPELWALLNFLLPTIFDCVEDFEQWFNAPFAQTGEKIEMNEEEQLLIIQRL 1926
Query: 970 KKLVAPHMLRRLKKDAMQNIPPKTERMVPVELSSIQAEYYRAMLTKNYQILRNIGKGVAQ 1029
K++ P +LRRLKK+ +P K E+++ ++S+ QA+ Y + TK L + G
Sbjct: 1927 HKVLRPFLLRRLKKEVEAQLPDKVEKVLKCDMSAFQAKMYDLIKTKGVSKLASSGGADGN 1986
Query: 1030 ----QSMLNIVMQLRKVCNHPYLIPGTEPDSGSVEFLHEMRIKASAKLTLLHSMLKVLYK 1085
+ + N +QLRK+CNHPYL E + + + I+ + K LL +L L
Sbjct: 1987 PKLAKGLKNTYVQLRKICNHPYLFYDDEYN------IDDNLIRYAGKFDLLDRLLPKLKA 2040
Query: 1086 EGHRVLIFSQMTKLLDILEDYLNIEFGPKTYE--RVDGSVSVGDRQAAITRFNQDKSR-F 1142
GHRVLIFSQMT+L++ILE + F K Y+ R+DGS +R + FN S F
Sbjct: 2041 AGHRVLIFSQMTQLINILEVF----FAYKDYKFLRLDGSTKSDERGHLLELFNAPNSEYF 2096
Query: 1143 VFLLSTRSCGLGINLATADTVIIYDSDFNPHADIQAMNRAHRIGQSKRLLVYRLVVRASV 1202
+F+LSTR+ GLG+NL TADTVII+DSD+NP D+QA +RAHRIGQ + + V RLV SV
Sbjct: 2097 IFVLSTRAGGLGLNLQTADTVIIFDSDWNPQMDLQAQDRAHRIGQKQTVRVLRLVTAHSV 2156
Query: 1203 EERILQLAKKKLMLDQLFV---------NKSGSQKEVEDIL 1234
EE IL A K LD+ + N+S +K +ED++
Sbjct: 2157 EESILARANFKKELDKKIIQAGQFNNKSNRSDRKKMLEDLM 2197
Score = 52 (23.4 bits), Expect = 2.1e-75, Sum P(4) = 2.1e-75
Identities = 19/75 (25%), Positives = 31/75 (41%)
Query: 690 DECTWEKLDEPALEKYSHLTDLFVQFERQTLKKDASEDELPRGKGDCQQSEIVALTEQPE 749
++ T EKL E K L + Q R+ L + S+ +L + K Q+ + E+
Sbjct: 1240 EDGTIEKLQETIQYKQLSLLEYQKQLRREVLDAEISKSKLKKSKDLKQKLDQQQSNEEKN 1299
Query: 750 ELKG--GALFPHQLE 762
K G + H E
Sbjct: 1300 RFKDFLGQILNHSKE 1314
Score = 51 (23.0 bits), Expect = 2.6e-75, Sum P(4) = 2.6e-75
Identities = 24/93 (25%), Positives = 39/93 (41%)
Query: 447 EENLACDTDLDAEVTENLAELSPNVIRSSDEECMKNDIGVDRIQVYRRSVTKECKVTKEC 506
E+++ + + D E N + S+ + MKND G + K K +E
Sbjct: 1560 EDDIGLNDNKDDEKITNDNTTTTTSASSNTDVIMKNDSG--------QHTDKNSKEIQEK 1611
Query: 507 KGENAIDLLREDDKDSDPVAVNGKVQDESAVST 539
K + D + D D + N KV D+S +ST
Sbjct: 1612 KDNDNKDQSKATTIDGDDNSSNIKVDDKS-IST 1643
Score = 49 (22.3 bits), Expect = 7.5e-76, Sum P(3) = 7.5e-76
Identities = 15/52 (28%), Positives = 29/52 (55%)
Query: 30 GLSNGKEENLVTSESPRNTPSAKRR----LKNEI--NADRSSTK---KKGND 72
GL++ K++ +T+++ T SA +KN+ + D++S + KK ND
Sbjct: 1564 GLNDNKDDEKITNDNTTTTTSASSNTDVIMKNDSGQHTDKNSKEIQEKKDND 1615
Score = 47 (21.6 bits), Expect = 2.9e-74, Sum P(5) = 2.9e-74
Identities = 11/40 (27%), Positives = 20/40 (50%)
Query: 508 GENAIDLLREDDKDSDPVAVNGKVQDESAVSTEDLGERND 547
G++ D+ D+KD + + + SA S D+ +ND
Sbjct: 1557 GDDEDDIGLNDNKDDEKITNDNTTTTTSASSNTDVIMKND 1596
Score = 44 (20.5 bits), Expect = 6.0e-74, Sum P(5) = 6.0e-74
Identities = 19/92 (20%), Positives = 41/92 (44%)
Query: 481 KNDIGVDRIQVYRRSVTKECKVTKECKGENAIDLLRED-----DKDSDPVAV--NGKVQD 533
++DIG++ + + +T + T N +++ D DK+S + + +D
Sbjct: 1560 EDDIGLNDNKDDEK-ITNDNTTTTTSASSNTDVIMKNDSGQHTDKNSKEIQEKKDNDNKD 1618
Query: 534 ESAVSTEDLGERNDKMVVEDADVSLRDNEGLT 565
+S +T D + + + V+D +S E T
Sbjct: 1619 QSKATTIDGDDNSSNIKVDDKSISTTTTETST 1650
Score = 41 (19.5 bits), Expect = 2.1e-75, Sum P(4) = 2.1e-75
Identities = 9/43 (20%), Positives = 18/43 (41%)
Query: 32 SNGKEENLVTSESPRNTPSAKRRLKNEINADRSSTKKKGNDGY 74
+N N+V + N + + N N ++T++K Y
Sbjct: 30 NNNNNNNIVGTPITTNNTTGGSSVSNNSNGGGNATEEKPKPSY 72
Score = 39 (18.8 bits), Expect = 2.9e-74, Sum P(5) = 2.9e-74
Identities = 12/42 (28%), Positives = 21/42 (50%)
Query: 439 SENHNKILEENLACDTDLDAEVTENLAELSPN----VIRSSD 476
++ KI N+ D D+D + +LS N ++RSS+
Sbjct: 1434 AKQSEKISIMNITNDVDIDTDGNTTNRDLSNNSKSPLVRSSN 1475
Score = 38 (18.4 bits), Expect = 7.5e-76, Sum P(3) = 7.5e-76
Identities = 10/41 (24%), Positives = 19/41 (46%)
Query: 1335 NEETTEDQAESPVAAVDDASAENSERKEENAVTGIEENEWD 1375
N +D + V+ V + ++RKE + EE++ D
Sbjct: 2397 NNNNNDDYDNNNVSVVATTPSRTNKRKELESNYSDEEDDDD 2437
Score = 38 (18.4 bits), Expect = 6.0e-74, Sum P(4) = 6.0e-74
Identities = 9/49 (18%), Positives = 24/49 (48%)
Query: 259 QNDEVPVEKHEKSSTNGSSGIKFVLAIGASERDRKRKPEVKDE-DSQKK 306
++DE + ++T+ SS ++ + + K E++++ D+ K
Sbjct: 1569 KDDEKITNDNTTTTTSASSNTDVIMKNDSGQHTDKNSKEIQEKKDNDNK 1617
>UNIPROTKB|F1MJ46 [details] [associations]
symbol:SMARCA4 "Transcription activator BRG1" species:9913
"Bos taurus" [GO:0071565 "nBAF complex" evidence=IEA] [GO:0071564
"npBAF complex" evidence=IEA] [GO:0060347 "heart trabecula
formation" evidence=IEA] [GO:0060318 "definitive erythrocyte
differentiation" evidence=IEA] [GO:0048730 "epidermis
morphogenesis" evidence=IEA] [GO:0048562 "embryonic organ
morphogenesis" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0043966 "histone H3 acetylation" evidence=IEA] [GO:0043388
"positive regulation of DNA binding" evidence=IEA] [GO:0035887
"aortic smooth muscle cell differentiation" evidence=IEA]
[GO:0035116 "embryonic hindlimb morphogenesis" evidence=IEA]
[GO:0030902 "hindbrain development" evidence=IEA] [GO:0030900
"forebrain development" evidence=IEA] [GO:0030216 "keratinocyte
differentiation" evidence=IEA] [GO:0030198 "extracellular matrix
organization" evidence=IEA] [GO:0019827 "stem cell maintenance"
evidence=IEA] [GO:0010424 "DNA methylation on cytosine within a CG
sequence" evidence=IEA] [GO:0008134 "transcription factor binding"
evidence=IEA] [GO:0007403 "glial cell fate determination"
evidence=IEA] [GO:0006346 "methylation-dependent chromatin
silencing" evidence=IEA] [GO:0006338 "chromatin remodeling"
evidence=IEA] [GO:0005726 "perichromatin fibrils" evidence=IEA]
[GO:0005719 "nuclear euchromatin" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0001889 "liver development"
evidence=IEA] [GO:0001835 "blastocyst hatching" evidence=IEA]
[GO:0001832 "blastocyst growth" evidence=IEA] [GO:0001570
"vasculogenesis" evidence=IEA] [GO:0000977 "RNA polymerase II
regulatory region sequence-specific DNA binding" evidence=IEA]
[GO:0000902 "cell morphogenesis" evidence=IEA] [GO:0000792
"heterochromatin" evidence=IEA] [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 InterPro:IPR006576 InterPro:IPR014978
Pfam:PF00176 Pfam:PF00271 Pfam:PF00439 Pfam:PF07533 Pfam:PF08880
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 SMART:SM00592 SMART:SM00951 GO:GO:0005524
GO:GO:0030216 GO:GO:0045944 GO:GO:0030198 GO:GO:0030900
GO:GO:0001889 GO:GO:0003682 GO:GO:0006338 GO:GO:0000122
GO:GO:0071564 GO:GO:0071565 GO:GO:0000902 GO:GO:0004386
GO:GO:0001570 GO:GO:0035116 GO:GO:0005719 GO:GO:0030902
GO:GO:0048730 GO:GO:0000977 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0019827 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 GO:GO:0000792 GO:GO:0060347
GO:GO:0043966 GO:GO:0043388 GeneTree:ENSGT00550000074659
InterPro:IPR013999 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 SMART:SM00573 PROSITE:PS51204 GO:GO:0001835
GO:GO:0007403 GO:GO:0006346 GO:GO:0010424 GO:GO:0060318
GO:GO:0048562 GO:GO:0001832 GO:GO:0005726 GO:GO:0035887
IPI:IPI00693529 OMA:HKPMESM EMBL:DAAA02019479 EMBL:DAAA02019480
EMBL:DAAA02019481 Ensembl:ENSBTAT00000025598 ArrayExpress:F1MJ46
Uniprot:F1MJ46
Length = 1604
Score = 818 (293.0 bits), Expect = 8.6e-76, Sum P(5) = 8.6e-76
Identities = 210/507 (41%), Positives = 282/507 (55%)
Query: 743 ALTEQPEE----LKGGALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSL 798
A+TE+ ++ + G L +Q++ L WL ++ + N ILADEMGLGKT+ A I+ L
Sbjct: 729 AVTERVDKQSALMVNGVLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTIALITYL 788
Query: 799 YCEFKAKLPCLVLVPLSTMPNWLAEFALWAPNLNVVEYHGCAKARAIIRQYEWHASDPDN 858
+ P L++VPLST+ NW EF WAP++ V Y G AR A P
Sbjct: 789 MEHKRINGPFLIIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAAR--------RAFVP-- 838
Query: 859 LNKKTSSYKFNVLLTTYEMILADSSHLRGVPWEVLVVDEGHRXXXXX-XXXXXXXXXXXX 917
+ S KFNVLLTTYE I+ D L + W+ ++VDEGHR
Sbjct: 839 ---QLRSGKFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVA 895
Query: 918 QHRVLLTGTPLQNNIGEMYNLLNFLQPASFPSLSSFEEKFND--LTTTQKV----EE--- 968
R+LLTGTPLQN + E++ LLNFL P F S S+FE+ FN T +KV EE
Sbjct: 896 PRRLLLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEETIL 955
Query: 969 ----LKKLVAPHMLRRLKKDAMQNIPPKTERMVPVELSSIQAEYYRAMLTKNYQILRNI- 1023
L K++ P +LRRLKK+ +P K E ++ ++S++Q YR M K +
Sbjct: 956 IIRRLHKVLRPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTDGSE 1015
Query: 1024 ----GKGVAQQSMLNIVMQLRKVCNHPYLIPGTEPD--------SGSVEFLHEMRIKASA 1071
GKG ++++N +MQLRK+CNHPY+ E G V+ L R AS
Sbjct: 1016 KDKKGKG-GTKTLMNTIMQLRKICNHPYMFQHIEESFSEHLGFTGGIVQGLDLYR--ASG 1072
Query: 1072 KLTLLHSMLKVLYKEGHRVLIFSQMTKLLDILEDYLNIEFGPKTYERVDGSVSVGDRQAA 1131
K LL +L L H+VL+F QMT L+ I+EDY G K Y R+DG+ DR
Sbjct: 1073 KFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYR-GFK-YLRLDGTTKAEDRGML 1130
Query: 1132 ITRFNQDKSRFVFLLSTRSCGLGINLATADTVIIYDSDFNPHADIQAMNRAHRIGQSKRL 1191
+T FN+ S + LLSTR+ GLG+NL +ADTVII+DSD+NPH D+QA +RAHRIGQ +
Sbjct: 1131 LT-FNEPGSEYFILLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEV 1189
Query: 1192 LVYRLVVRASVEERILQLAKKKLMLDQ 1218
V RL SVEE+IL AK KL +DQ
Sbjct: 1190 RVLRLCTVNSVEEKILAAAKYKLNVDQ 1216
Score = 43 (20.2 bits), Expect = 8.6e-76, Sum P(5) = 8.6e-76
Identities = 9/20 (45%), Positives = 11/20 (55%)
Query: 1351 DDASAENSERKEENAVTGIE 1370
DD+ E SE +EE G E
Sbjct: 1525 DDSEGEESEEEEEGEEEGSE 1544
Score = 40 (19.1 bits), Expect = 8.6e-76, Sum P(5) = 8.6e-76
Identities = 9/30 (30%), Positives = 15/30 (50%)
Query: 241 KFHPAEEVLPHSQVTKSEQNDEVPVEKHEK 270
+ +P EV P S +S +E E+ E+
Sbjct: 636 EMNPGYEVAPRSDSEESGSEEEEEEEEEEQ 665
Score = 40 (19.1 bits), Expect = 8.6e-76, Sum P(5) = 8.6e-76
Identities = 10/42 (23%), Positives = 22/42 (52%)
Query: 524 PVAVNGKVQDESAVSTEDLGERNDKMVVEDADVSLRDNEGLT 565
PV K+ D + +D+ E + + ++E+A + D G++
Sbjct: 675 PVEEKKKIPDPDS---DDVSEVDARHIIENAKQDVDDEYGVS 713
Score = 39 (18.8 bits), Expect = 1.1e-75, Sum P(5) = 1.1e-75
Identities = 7/19 (36%), Positives = 13/19 (68%)
Query: 289 ERDRKRKPEVKDEDSQKKL 307
E++R R+ +DE+ +KL
Sbjct: 515 EKERMRRLMAEDEEGYRKL 533
Score = 37 (18.1 bits), Expect = 8.6e-76, Sum P(5) = 8.6e-76
Identities = 8/16 (50%), Positives = 10/16 (62%)
Query: 206 ENTSAGVPVEGSSSCP 221
E+ S+ VP G SS P
Sbjct: 128 EHASSPVPASGPSSGP 143
>ZFIN|ZDB-GENE-030131-5964 [details] [associations]
symbol:smarca2 "SWI/SNF related, matrix
associated, actin dependent regulator of chromatin, subfamily a,
member 2" species:7955 "Danio rerio" [GO:0016817 "hydrolase
activity, acting on acid anhydrides" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0016818 "hydrolase activity, acting on acid
anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR006576 InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271
Pfam:PF00439 Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SMART:SM00592 SMART:SM00951 ZFIN:ZDB-GENE-030131-5964 GO:GO:0005524
GO:GO:0005634 GO:GO:0006355 GO:GO:0003677 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10
SUPFAM:SSF47370 PROSITE:PS00633 InterPro:IPR018359 KO:K11647
InterPro:IPR013999 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 SMART:SM00573 PROSITE:PS51204 CTD:6595
HOVERGEN:HBG056636 EMBL:BC060676 IPI:IPI00483012 RefSeq:NP_997881.1
UniGene:Dr.93531 ProteinModelPortal:Q6P9P2 SMR:Q6P9P2 STRING:Q6P9P2
GeneID:334032 KEGG:dre:334032 InParanoid:Q6P9P2 NextBio:20810237
ArrayExpress:Q6P9P2 Uniprot:Q6P9P2
Length = 1568
Score = 810 (290.2 bits), Expect = 1.0e-75, Sum P(2) = 1.0e-75
Identities = 200/506 (39%), Positives = 280/506 (55%)
Query: 741 IVALTEQPEELKGGALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYC 800
I + +Q L G L +Q++ L W+ ++ + N ILADEMGLGKT+ I+ L
Sbjct: 711 IERVDKQSTFLINGTLKQYQIQGLEWMVSLYNNNLNGILADEMGLGKTIQTIGLITYLME 770
Query: 801 EFKAKLPCLVLVPLSTMPNWLAEFALWAPNLNVVEYHGCAKARAIIRQYEWHASDPDNLN 860
+ P L++VPLST+ NW+ E WAP++ + Y G R +L
Sbjct: 771 LKRLNGPYLIIVPLSTLSNWVYELDKWAPSIVKIAYKGTPSMRR-------------SLV 817
Query: 861 KKTSSYKFNVLLTTYEMILADSSHLRGVPWEVLVVDEGHRXXXXX-XXXXXXXXXXXXQH 919
+ S KFNVL+TTYE I+ D L + W+ ++VDEGHR
Sbjct: 818 PQLRSGKFNVLITTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPR 877
Query: 920 RVLLTGTPLQNNIGEMYNLLNFLQPASFPSLSSFEEKFN----------DLTTTQKV--- 966
R+LLTGTPLQN + E++ LLNFL P F S S+FE+ FN DL + +
Sbjct: 878 RLLLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGERVDLNEEETILII 937
Query: 967 EELKKLVAPHMLRRLKKDAMQNIPPKTERMVPVELSSIQAEYYRAMLTKNYQILRNI--- 1023
L K++ P +LRRLKK+ +P K E ++ ++S+IQ YR M K +
Sbjct: 938 RRLHKVLRPFLLRRLKKEVESQLPEKVEYVIKCDMSAIQKVLYRHMQGKGILLTDGSEKD 997
Query: 1024 --GKGVAQQSMLNIVMQLRKVCNHPYLIPGTEPDSGS-VEFLHEM-----RIKASAKLTL 1075
GKG A+ +++N +MQL+K+CNHPY+ E + F + + +AS K L
Sbjct: 998 KKGKGGAK-TLMNTIMQLKKICNHPYMFQHIEESFAEHLGFPNGIISGPDLYRASGKFEL 1056
Query: 1076 LHSMLKVLYKEGHRVLIFSQMTKLLDILEDYLNIEFGPKT--YERVDGSVSVGDRQAAIT 1133
L +L L HRVL+F QMT L+ ILEDY FG + Y R+DG+ DR +
Sbjct: 1057 LDRILPKLKATNHRVLLFCQMTSLMTILEDY----FGYRNFLYLRLDGTTKSEDRAMLLK 1112
Query: 1134 RFNQDKSR-FVFLLSTRSCGLGINLATADTVIIYDSDFNPHADIQAMNRAHRIGQSKRLL 1192
+FN++ S+ F+FLLSTR+ GLG+NL ADTV+I+DSD+NPH D+QA +RAHRIGQ +
Sbjct: 1113 KFNEEGSQYFIFLLSTRAGGLGLNLQAADTVVIFDSDWNPHQDLQAQDRAHRIGQQNEVR 1172
Query: 1193 VYRLVVRASVEERILQLAKKKLMLDQ 1218
V RL SVEE+IL AK KL +DQ
Sbjct: 1173 VLRLCTVNSVEEKILAAAKYKLNVDQ 1198
Score = 39 (18.8 bits), Expect = 1.0e-75, Sum P(2) = 1.0e-75
Identities = 7/19 (36%), Positives = 13/19 (68%)
Query: 289 ERDRKRKPEVKDEDSQKKL 307
E++R R+ +DE+ +KL
Sbjct: 502 EKERMRRLMAEDEEGYRKL 520
>ASPGD|ASPL0000056677 [details] [associations]
symbol:AN1024 species:162425 "Emericella nidulans"
[GO:0005575 "cellular_component" evidence=ND] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0006312 "mitotic
recombination" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 EMBL:BN001308 GO:GO:0003677 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
HOGENOM:HOG000172362 EnsemblFungi:CADANIAT00001623 OMA:NNITELW
Uniprot:C8VTY9
Length = 868
Score = 441 (160.3 bits), Expect = 3.2e-75, Sum P(3) = 3.2e-75
Identities = 114/329 (34%), Positives = 164/329 (49%)
Query: 702 LEKYSHLTDLFVQFERQTLKKDASE---DELPRGKGDCQQSEIVALTEQPEELKGGALFP 758
+ Y DL V + T ++A E DE + E+VA T+QP + GG +
Sbjct: 146 ISNYFKKADLNVDEAKNTTVQEALEHAADEFEAKPTVLGEQELVA-TQQPAPVTGGKMRK 204
Query: 759 HQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLSTMP 818
+QLE L WL+ W ILADEMGLGKTV A + I+ + E P L+ PLST+
Sbjct: 205 YQLEGLEWLKSLWMNGLCGILADEMGLGKTVQAISLIA-FFKEHNVSGPFLISAPLSTVS 263
Query: 819 NWLAEFALWAPNLNVVEYHGCAKARAIIRQYEWHASDPDNLNKKTSSYKFNVLLTTYEMI 878
NW+ EFA W P + V YHG RA +R+ + D S F V+ T+YE+
Sbjct: 264 NWVDEFARWTPGIKTVLYHGTRDERAQLRKKFMNLRDQ-------KSPDFPVVCTSYEIC 316
Query: 879 LADSSHLRGVPWEVLVVDEGHRXXXXXXXXXXXXXXXXXQHRVLLTGTPLQNNIGEMYNL 938
+ D L W ++VDEGHR +R+L+TGTPLQNNI E+++L
Sbjct: 317 MNDRKFLAQYQWRYIIVDEGHRLKNMNCRLIKELLSYNSANRLLITGTPLQNNITELWSL 376
Query: 939 LNFLQPASFPSLSSFEEKFN-----------DLTTTQK---VEELKKLVAPHMLRRLKKD 984
L+FL P F L+SF+ F+ D+ +K V + ++ P +LRR+K D
Sbjct: 377 LHFLLPEIFNDLNSFQNWFDFSSVLDNNGQTDMIERRKRTLVSTMHSILKPFLLRRVKTD 436
Query: 985 AMQNIPPKTERMVPVELSSIQAEYYRAML 1013
+P K E ++ L+ Q + YR +L
Sbjct: 437 VESALPKKREYILYAPLTLEQKDLYREIL 465
Score = 418 (152.2 bits), Expect = 3.2e-75, Sum P(3) = 3.2e-75
Identities = 91/199 (45%), Positives = 126/199 (63%)
Query: 1027 VAQQSMLNIVMQLRKVCNHPYLI--PGTEPDSGSVEFLHEMRIKASAKLTLLHSMLKVLY 1084
+AQ+ M N VMQ R CN P+ P E D S++ E + AS K+ LL ++ L
Sbjct: 584 IAQKKMQNPVMQARLACNSPHNFYWPWAE-DPSSID---ETLVTASGKMLLLDRLIPCLL 639
Query: 1085 KEGHRVLIFSQMTKLLDILEDYLNIEFGPKTYERVDGSVSVGDRQAAITRFNQDKSRFVF 1144
+GH++LIFSQ LDIL+D+ R+DG++S DRQA I FN DK +F
Sbjct: 640 NKGHKILIFSQFKTQLDILQDWAT-HLRSWNCCRIDGAISQADRQAQIKAFNTDKDYKIF 698
Query: 1145 LLSTRSCGLGINLATADTVIIYDSDFNPHADIQAMNRAHRIGQSKRLLVYRLVVRASVEE 1204
LLSTR+ G GINL ADTVI++DSD+NP D+QA +RAHRIGQ+K ++VYRL + +VE+
Sbjct: 699 LLSTRAGGQGINLVAADTVILFDSDWNPQQDLQAQDRAHRIGQTKPVIVYRLATKGTVEQ 758
Query: 1205 RILQLAKKKLMLDQLFVNK 1223
+L+ A K L++L + K
Sbjct: 759 TLLEKADSKRRLERLVIQK 777
Score = 42 (19.8 bits), Expect = 3.2e-34, Sum P(2) = 3.2e-34
Identities = 17/56 (30%), Positives = 25/56 (44%)
Query: 701 ALEKYSHLTDLFVQFERQTLKKDASEDELPRGKG-DCQQSEIVALTEQPEELKGGA 755
AL + +++FV + +KK E L K + QQ E A T + E K A
Sbjct: 44 ALMHLLNTSEVFVAIMAEKMKKQQEEARLEAAKKQEQQQKEQQADTSE-ESRKASA 98
Score = 38 (18.4 bits), Expect = 3.2e-75, Sum P(3) = 3.2e-75
Identities = 10/45 (22%), Positives = 19/45 (42%)
Query: 338 EKQRTNNDEVSASLCEVDVGTKGLDAQRKDELAEETTDPLDKSDK 382
++Q+ + E S +G A + A E TD +K ++
Sbjct: 83 KEQQADTSEESRKASAQPTERRGTRASTRQAAAAEATDNNEKKEE 127
>RGD|2323132 [details] [associations]
symbol:LOC100359912 "SWI/SNF-related matrix-associated
actin-dependent regulator of chromatin a5-like" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0031491 "nucleosome binding" evidence=IEA] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 RGD:2323132 GO:GO:0005524 GO:GO:0003677
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0004386 InterPro:IPR014001 PROSITE:PS51192
GO:GO:0016585 GO:GO:0031491 GO:GO:0043044
GeneTree:ENSGT00680000100002 SUPFAM:SSF101224 IPI:IPI00390811
Ensembl:ENSRNOT00000031851 Uniprot:F1M7H3
Length = 760
Score = 743 (266.6 bits), Expect = 2.4e-74, Sum P(2) = 2.4e-74
Identities = 160/360 (44%), Positives = 227/360 (63%)
Query: 868 FNVLLTTYEMILADSSHLRGVPWEVLVVDEGHRXXXXXXXXXXXXXXXXXQHRVLLTGTP 927
++V +T+YEM++ + S + W LV+DE HR +R+LLTGTP
Sbjct: 1 WDVCVTSYEMLIKEKSVFKKFNWRYLVIDEAHRIKNEKSKLSEIVREFKTTNRLLLTGTP 60
Query: 928 LQNNIGEMYNLLNFLQPASFPSLSSFEEKF---NDLTTTQKVEELKKLVAPHMLRRLKKD 984
LQNN+ E+++LLNFL P F S F+ F N L + VE L ++ P +LRR+K D
Sbjct: 61 LQNNLHELWSLLNFLLPDVFNSADDFDSWFDTNNCLGDKKLVERLHMVLRPFLLRRIKAD 120
Query: 985 AMQNIPPKTERMVPVELSSIQAEYYRAMLTKNYQILRNIGKGVAQQSMLNIVMQLRKVCN 1044
+++PPK E + V LS +Q E+Y +L K+ IL + GK + + +LNI+MQLRK CN
Sbjct: 121 VEKSLPPKKEVKIYVGLSKMQREWYTRILMKDIDILNSAGK-MDKMRLLNILMQLRKCCN 179
Query: 1045 HPYLIPGTEPDSGSVEFLHEMRIKASAKLTLLHSMLKVLYKEGHRVLIFSQMTKLLDILE 1104
HPYL G EP +H + S K+ +L +L L ++G RVLIFSQMT++LDILE
Sbjct: 180 HPYLFDGAEPGPPYTTDMH--LVTNSGKMVVLDKLLPKLKEQGSRVLIFSQMTRVLDILE 237
Query: 1105 DYLNIEFGPKTYERVDGSVSVGDRQAAITRFNQDKS-RFVFLLSTRSCGLGINLATADTV 1163
DY + Y R+DG +RQ +I +N+ S +FVF+LSTR+ GLGINLATAD V
Sbjct: 238 DYCM--WRNYEYCRLDGQTPHDERQDSINAYNEPNSTKFVFMLSTRAGGLGINLATADVV 295
Query: 1164 IIYDSDFNPHADIQAMNRAHRIGQSKRLLVYRLVVRASVEERILQLAKKKLMLDQLFVNK 1223
I+YDSD+NP D+QAM+RAHRIGQ+K + V+R + +VEERI++ A+ KL LD + + +
Sbjct: 296 ILYDSDWNPQVDLQAMDRAHRIGQTKTVRVFRFITDNTVEERIVERAEMKLRLDSIVIQQ 355
Score = 45 (20.9 bits), Expect = 2.4e-74, Sum P(2) = 2.4e-74
Identities = 12/46 (26%), Positives = 24/46 (52%)
Query: 1208 QLAKKKLMLDQLFVN--KSGSQKEVEDILRWGTEELFNDSPGINGK 1251
+L +K+ +L Q F N K + ++ +WG ++ N + + GK
Sbjct: 551 ELEEKEKLLTQGFTNWNKRDFNQFIKANEKWGRNDIENIAREVEGK 596
>TAIR|locus:2087780 [details] [associations]
symbol:PIE1 "PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1"
species:3702 "Arabidopsis thaliana" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0004386 "helicase activity" evidence=IEA;ISS] [GO:0005524 "ATP
binding" evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM]
[GO:0009910 "negative regulation of flower development"
evidence=IGI] [GO:0016514 "SWI/SNF complex" evidence=ISS]
[GO:0048441 "petal development" evidence=IGI] [GO:0048451 "petal
formation" evidence=IGI;RCA] [GO:0005618 "cell wall" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0042742 "defense
response to bacterium" evidence=IGI;RCA] [GO:0046686 "response to
cadmium ion" evidence=IEP] [GO:0000278 "mitotic cell cycle"
evidence=RCA] [GO:0003002 "regionalization" evidence=RCA]
[GO:0006338 "chromatin remodeling" evidence=RCA] [GO:0007155 "cell
adhesion" evidence=RCA] [GO:0009793 "embryo development ending in
seed dormancy" evidence=RCA] [GO:0009909 "regulation of flower
development" evidence=RCA] [GO:0010090 "trichome morphogenesis"
evidence=RCA] [GO:0010228 "vegetative to reproductive phase
transition of meristem" evidence=RCA] [GO:0033043 "regulation of
organelle organization" evidence=RCA] [GO:0045010 "actin
nucleation" evidence=RCA] [GO:0048449 "floral organ formation"
evidence=RCA] [GO:0048453 "sepal formation" evidence=RCA]
[GO:0048765 "root hair cell differentiation" evidence=RCA]
[GO:0071555 "cell wall organization" evidence=RCA]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 GO:GO:0005524 GO:GO:0005618
GO:GO:0046686 EMBL:CP002686 GO:GO:0003677 GO:GO:0042742
GO:GO:0003682 Gene3D:1.10.10.60 GO:GO:0016514 GO:GO:0004386
GO:GO:0009910 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR017877 PROSITE:PS50090
InterPro:IPR013999 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 SMART:SM00573 PROSITE:PS51204 KO:K11320 GO:GO:0048451
EMBL:AY279398 IPI:IPI00545059 RefSeq:NP_187887.3 UniGene:At.39549
SMR:Q7X9V2 IntAct:Q7X9V2 STRING:Q7X9V2 EnsemblPlants:AT3G12810.1
GeneID:820463 KEGG:ath:AT3G12810 TAIR:At3g12810 InParanoid:Q7X9V2
OMA:CCHPPPS ProtClustDB:CLSN2680833 Genevestigator:Q7X9V2
Uniprot:Q7X9V2
Length = 2055
Score = 460 (167.0 bits), Expect = 2.8e-74, Sum P(2) = 2.8e-74
Identities = 167/613 (27%), Positives = 274/613 (44%)
Query: 473 RSSDEECMKNDIGVDRIQVYRRSVT-KECKVTKECKGENAIDLLREDDKDSDPVAVNGKV 531
R + E ++N++ + ++ RR + + + T K EN D L + + PV +
Sbjct: 240 RQEELEALQNEVDLPVEELLRRYTSGRVSRETSPVKDENE-DNLTSVSRVTSPV--KDEN 296
Query: 532 QDESAVSTEDLGE-RNDKMVVEDAD--VSLR---DNEG-LTVSEIH---ITCESTDKDVD 581
QD A +D GE +N+ E+ + S+R D+ G L +SE H + T V
Sbjct: 297 QDNLASVGQDHGEDKNNLAASEETEGNPSVRRSNDSYGHLAISETHSHDLEPGMTTASVK 356
Query: 582 VGKKTSGSVAKRVQEPA--VTESAQVKGKAVSY---EFLVKWVGKSNIHNSWIPESQLKV 636
K+ QE V + + K + E L K + ++ + + + ++
Sbjct: 357 SRKEDHTYDFNDEQEDVDFVLANGEEKDDEATLAVEEELAKADNEDHVEEIALLQKESEM 416
Query: 637 LAKRKLENYKAKYGTTVINICDERWKQPQRVISLRSSKDGTREAFVKWTGLPYDECTWEK 696
+ L YK +G I+ + S+ S + ++A + + EC K
Sbjct: 417 PIEVLLARYKEDFGGKDISEDESESSFAVSEDSIVDSDENRQQADLDDDNVDLTEC---K 473
Query: 697 LD-EPALEKYSHLTDLFVQFERQTLKKDASEDELPRGKGDCQQSEIVALTEQPEELKGGA 755
LD EP E ++ F + KD+S D++ + ++ T +++
Sbjct: 474 LDPEPCSE---NVEGTFHEVAEDN-DKDSS-DKIADAAAAARSAQPTGFTYSTTKVRTKL 528
Query: 756 --LFPHQLE-----ALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPC 808
L H L L+WL + K N ILADEMGLGKT+ A ++ L C+ P
Sbjct: 529 PFLLKHSLREYQHIGLDWLVTMYEKKLNGILADEMGLGKTIMTIALLAHLACDKGIWGPH 588
Query: 809 LVLVPLSTMPNWLAEFALWAPNLNVVEYHGCAKARAIIRQYEWHASDPDNLNKKTSSYKF 868
L++VP S M NW EF W P ++ Y G AK R + RQ W LN F
Sbjct: 589 LIVVPTSVMLNWETEFLKWCPAFKILTYFGSAKERKLKRQ-GWM-----KLNS------F 636
Query: 869 NVLLTTYEMILADSSHLRGVPWEVLVVDEGHRXXXXXXXXXXXXXXXXXQHRVLLTGTPL 928
+V +TTY +++ DS + W+ L++DE H + R+LLTGTPL
Sbjct: 637 HVCITTYRLVIQDSKMFKRKKWKYLILDEAHLIKNWKSQRWQTLLNFNSKRRILLTGTPL 696
Query: 929 QNNIGEMYNLLNFLQPASFPSLSSFEEKF-NDLT---------TTQKVEELKKLVAPHML 978
QN++ E+++L++FL P F S F++ F N + + ++ L ++ P +L
Sbjct: 697 QNDLMELWSLMHFLMPHVFQSHQEFKDWFCNPIAGMVEGQEKINKEVIDRLHNVLRPFLL 756
Query: 979 RRLKKDAMQNIPPKTERMVPVELSSIQAEYYRAMLTKNYQILRNIGKGVAQQSMLNIVMQ 1038
RRLK+D + +P K E ++ LS Q Y + + + G + M++I+MQ
Sbjct: 757 RRLKRDVEKQLPSKHEHVIFCRLSKRQRNLYEDFIAST-ETQATLTSG-SFFGMISIIMQ 814
Query: 1039 LRKVCNHPYLIPG 1051
LRKVCNHP L G
Sbjct: 815 LRKVCNHPDLFEG 827
Score = 393 (143.4 bits), Expect = 2.8e-74, Sum P(2) = 2.8e-74
Identities = 112/307 (36%), Positives = 169/307 (55%)
Query: 1072 KLTLLHSMLKVLYKEGHRVLIFSQMTKLLDILEDYLNIEFGPKTYERVDGSVSVGDRQAA 1131
KL L +L+ L GHR LIF+QMTK+LD+LE ++N+ +G TY R+DGS +RQ
Sbjct: 1076 KLQELAMLLRKLKFGGHRALIFTQMTKMLDVLEAFINL-YG-YTYMRLDGSTPPEERQTL 1133
Query: 1132 ITRFNQDKSRFVFLLSTRSCGLGINLATADTVIIYDSDFNPHADIQAMNRAHRIGQSKRL 1191
+ RFN + F+F+LSTRS G+GINL ADTVI YDSD+NP D QA +R HRIGQ++ +
Sbjct: 1134 MQRFNTNPKIFLFILSTRSGGVGINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREV 1193
Query: 1192 LVYRLVVRASVEERILQLAKKKLMLDQLFVNKSGSQKEVEDILRWGTEELFNDSPGINGK 1251
+YRL+ +++EE IL+ A +K +LD L + ++G + E + ELF+ + K
Sbjct: 1194 HIYRLISESTIEENILKKANQKRVLDNLVI-QNG-EYNTEFFKKLDPMELFSGHKALTTK 1251
Query: 1252 DMGENNTSIEEAVRDLEQKHRKRGGGLGDVYQDKCTEGSTKIVWDENAIARLLDRSNLQS 1311
D E TS + D+ + L +D+ + K V E A+ D
Sbjct: 1252 D--EKETS-KHCGADIPLSNADVEAALKQA-EDEADYMALKRVEQEEAV----DNQEFTE 1303
Query: 1312 GSTDLAEGD-LENDMLGSVKATEWNEETTEDQAESPVAAVDDASAENSERKEENAV--TG 1368
+ E D L N+ +KA E ++ A P A ++ S +S+ ++E AV T
Sbjct: 1304 EPVERPEDDELVNE--DDIKADEPADQGLV--AAGP--AKEEMSLLHSDIRDERAVITTS 1357
Query: 1369 IEENEWD 1375
+E++ D
Sbjct: 1358 SQEDDTD 1364
Score = 65 (27.9 bits), Expect = 3.6e-32, Sum P(3) = 3.6e-32
Identities = 35/148 (23%), Positives = 67/148 (45%)
Query: 400 ELQQVDRVLGCRVKGDDTSSSC--HISATATDDRHSDDFLVSENHNKI-LEENLAC---D 453
E + VD VL + DD ++ A A ++ H ++ + + +++ +E LA D
Sbjct: 369 EQEDVDFVLANGEEKDDEATLAVEEELAKADNEDHVEEIALLQKESEMPIEVLLARYKED 428
Query: 454 ---TDLDAEVTENLAELSPNVIRSSDEECMKNDIGVDRIQVYRRSVTKECKVTKECKGEN 510
D+ + +E+ +S + I SDE + D+ D + + ECK+ E EN
Sbjct: 429 FGGKDISEDESESSFAVSEDSIVDSDENRQQADLDDDNVDL------TECKLDPEPCSEN 482
Query: 511 AIDLLREDDKDSDPVAVNGKVQDESAVS 538
E +D+D + + K+ D +A +
Sbjct: 483 VEGTFHEVAEDNDKDS-SDKIADAAAAA 509
Score = 53 (23.7 bits), Expect = 1.7e-38, Sum P(2) = 1.7e-38
Identities = 12/48 (25%), Positives = 22/48 (45%)
Query: 1230 VEDILRWGTEEL-FND---SPGINGKDMGENNTSIEEAVRDLEQKHRK 1273
+ED W + ND G + +G++ S ++ + + KHRK
Sbjct: 1934 IEDSFGWASNTFPANDLKSRTGTKAQSLGKHKLSASDSAKSTKSKHRK 1981
Score = 49 (22.3 bits), Expect = 3.6e-32, Sum P(3) = 3.6e-32
Identities = 14/55 (25%), Positives = 26/55 (47%)
Query: 1 MKDNSSSTSTMINR-NWVLKRKRRKLPCGPGLSNGKEEN-LVTSESPRNTPSAKR 53
+KD + T ++R +K + + G +G+++N L SE PS +R
Sbjct: 274 VKDENEDNLTSVSRVTSPVKDENQDNLASVGQDHGEDKNNLAASEETEGNPSVRR 328
Score = 41 (19.5 bits), Expect = 4.6e-30, Sum P(2) = 4.6e-30
Identities = 21/94 (22%), Positives = 36/94 (38%)
Query: 517 EDDKDSDPVAVNGKVQDESAVST--EDLGERNDKMVVEDADVSLRDNEGLTVSEIHITCE 574
E+ + P +N ES ED +++ +D D D + T E E
Sbjct: 186 EERAEQIPPEINSSAGLESGSPELDEDYDLKSEDETEDDEDTIEEDEKHFTKRERQEELE 245
Query: 575 STDKDVDVG------KKTSGSVAKRVQEPAVTES 602
+ +VD+ + TSG V++ P E+
Sbjct: 246 ALQNEVDLPVEELLRRYTSGRVSRETS-PVKDEN 278
Score = 41 (19.5 bits), Expect = 1.1e-29, Sum P(3) = 1.1e-29
Identities = 23/113 (20%), Positives = 51/113 (45%)
Query: 429 DDRHSDDFLVSENHNKILEENLACDTDL-DAEVTENLAELSPNVIRSSDEECMKNDIGVD 487
D++ DF+++ K E LA + +L A+ +++ E++ +++ E M ++ +
Sbjct: 368 DEQEDVDFVLANGEEKDDEATLAVEEELAKADNEDHVEEIA--LLQKESE--MPIEVLLA 423
Query: 488 RIQVYRRSVTKECKVTKECKGENAIDLLREDDKDSDPVAVNGKVQDESAVSTE 540
R Y+ K E + E++ + + DSD + D++ TE
Sbjct: 424 R---YKEDFGG--KDISEDESESSFAVSEDSIVDSDENRQQADLDDDNVDLTE 471
Score = 37 (18.1 bits), Expect = 1.2e-29, Sum P(2) = 1.2e-29
Identities = 11/51 (21%), Positives = 22/51 (43%)
Query: 730 PRGKGDCQQSEIVALTEQPEELKGGALFPHQLEALNWLRKCWHKSKNVILA 780
P + ++ + + ++P K + H LE + WL K + + LA
Sbjct: 23 PDNESRAKRQKTLEAPKEPRRPK--THWDHVLEEMAWLSKDFESERKWKLA 71
>CGD|CAL0003962 [details] [associations]
symbol:orf19.239 species:5476 "Candida albicans" [GO:0016586
"RSC complex" evidence=IEA] [GO:0007059 "chromosome segregation"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0031055 "chromatin remodeling at
centromere" evidence=IEA] [GO:0006337 "nucleosome disassembly"
evidence=IEA] [GO:0016584 "nucleosome positioning" evidence=IEA]
[GO:0006302 "double-strand break repair" evidence=IEA] [GO:0006368
"transcription elongation from RNA polymerase II promoter"
evidence=IEA] [GO:0007126 "meiosis" evidence=IEA] [GO:0007010
"cytoskeleton organization" evidence=IEA] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=IEA] [GO:0000086
"G2/M transition of mitotic cell cycle" evidence=IEA] [GO:0015616
"DNA translocase activity" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0070577 "histone acetyl-lysine binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 CGD:CAL0003962 GO:GO:0005524 GO:GO:0003677
GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370
EMBL:AACQ01000027 EMBL:AACQ01000026 InterPro:IPR014012
PROSITE:PS51204 KO:K11786 RefSeq:XP_719938.1 RefSeq:XP_720068.1
ProteinModelPortal:Q5AEM9 STRING:Q5AEM9 GeneID:3638290
GeneID:3638351 KEGG:cal:CaO19.239 KEGG:cal:CaO19.7869
Uniprot:Q5AEM9
Length = 1303
Score = 781 (280.0 bits), Expect = 2.0e-73, Sum P(2) = 2.0e-73
Identities = 212/649 (32%), Positives = 348/649 (53%)
Query: 744 LTEQPEELKGGALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFK 803
+TEQP L GG L +Q++ L W+ ++ N ILADEMGLGKT+ + + ++ L E K
Sbjct: 489 ITEQPTILVGGKLKEYQMKGLEWMVSLYNNHLNGILADEMGLGKTIQSISLVTYLI-EKK 547
Query: 804 AKLPCLVLVPLSTMPNWLAEFALWAPNLNVVEYHGCAKARAIIRQYEWHASDPDNLNKKT 863
+ L++VPLST+ NW EF WAP++ V+ Y G + R ++ + N
Sbjct: 548 HENKFLIIVPLSTITNWTLEFEKWAPSIKVIVYKGSQQQRRSLQPDIRYG----NFQVLL 603
Query: 864 SSYKFNVLLTTYEMILADSSHLRGVPWEVLVVDEGHRXXXXXXXXXXXXXXXXXQHRVLL 923
++Y++ V+ + SH+ ++ + ++R++L
Sbjct: 604 TTYEY-VIRERPMLAKFHYSHM-------IIDEGHRMKNAQSKLSQTLRTYYKTKNRLIL 655
Query: 924 TGTPLQNNIGEMYNLLNFLQPASFPSLSSFEEKFN------------DLTTTQK---VEE 968
TGTPLQNN+ E++ LLNF+ P F S+ SF++ FN +LT + +
Sbjct: 656 TGTPLQNNLPELWALLNFVLPGIFNSVKSFDDWFNTPFANTGAQEKIELTEEESLLVIRR 715
Query: 969 LKKLVAPHMLRRLKKDAMQNIPPKTERMVPVELSSIQAEYYRAMLTKNYQIL-RNIGKGV 1027
L K++ P +LRRLKKD +++P K E+++ LS +Q Y+ ML N + ++G
Sbjct: 716 LHKVLRPFLLRRLKKDVEKDLPDKVEKVLKCNLSGLQYVLYQQMLKHNALFVGADVGGAK 775
Query: 1028 AQ-QSMLNIVMQLRKVCNHPYLIPGTEPDSGSVEFLHEMRIKASAKLTLLHSMLKVLYKE 1086
+ + + N +MQLRK+CNHP++ E S +++ + S K LL +L K
Sbjct: 776 SGIKGLNNKIMQLRKICNHPFVFEEVESVLNSSRLTNDLIWRVSGKFELLDRVLPKFKKS 835
Query: 1087 GHRVLIFSQMTKLLDILEDYLNIEFGPKTYERVDGSVSVGDRQAAITRFNQ-DKSRFVFL 1145
GHRVL+F QMT+++DI+ED+L + Y R+DGS +RQ + FN D F FL
Sbjct: 836 GHRVLMFFQMTQIMDIMEDFLR--WKDMKYLRLDGSTKAEERQDMLKVFNAPDSDYFCFL 893
Query: 1146 LSTRSCGLGINLATADTVIIYDSDFNPHADIQAMNRAHRIGQSKRLLVYRLVVRASVEER 1205
LSTR+ GLG+NL TADTVII+D+D+NPH D+QA +RAHRIGQ + + RL+ SVEE
Sbjct: 894 LSTRAGGLGLNLQTADTVIIFDTDWNPHQDLQAQDRAHRIGQKNEVRILRLITNDSVEEV 953
Query: 1206 ILQLAKKKLMLD----QL--FVNKSGSQKEVEDILRWGTEELFNDSPGINGKDMGENNTS 1259
IL+ A +KL +D Q F NKS ++++ E L+ E D+ NG D EN++
Sbjct: 954 ILERAHQKLDIDGKVIQAGKFDNKSTAEEQ-EAFLKRLLEA---DA---NGADNEENDSL 1006
Query: 1260 IEEAVRDLEQKHRKRGGGLGDVYQDKCTEGSTKIVWDENAIARLLDRSNLQSGST-DLA- 1317
++ + ++ + + + +++ +E K+ + +RL+++ L + T D++
Sbjct: 1007 DDDELNEILARSEEEKVLFASMDEERKSE---KVPYK----SRLIEKDELPAVFTEDISH 1059
Query: 1318 ---EGDLENDMLGSVKATEWNEETTEDQAESPVAAVDDASAENSERKEE 1363
+ + E + K +++ +E+Q + +D E +RKEE
Sbjct: 1060 HFEKKEKELSKMRDKKRVRYDDGLSEEQWLKAMDDDNDTVEEAIKRKEE 1108
Score = 42 (19.8 bits), Expect = 2.0e-73, Sum P(2) = 2.0e-73
Identities = 18/86 (20%), Positives = 36/86 (41%)
Query: 195 SQVDVSCSTKPENTSAGVPVEGSSSCPNDDDEKQLNASPTDSLADTKFHPAEEVLPHSQV 254
++++ T+ +N VP SSS D K SP ++ H AE+++ +
Sbjct: 179 TELETDFETRAQNLGIKVPSPSSSSSSKTD--KDTLHSPLGTI-----H-AEKIISNKIS 230
Query: 255 TKSEQNDEVPVEKHEKSSTNGSSGIK 280
+ ++ + +P T+G K
Sbjct: 231 QRLKELENLPANIGTFGDTDGIDKFK 256
Score = 41 (19.5 bits), Expect = 2.6e-73, Sum P(2) = 2.6e-73
Identities = 11/37 (29%), Positives = 20/37 (54%)
Query: 24 KLPCGPGLSNGKEENLVTSESPRNTPSAKRRLKNEIN 60
K+P P S+ + + T SP T A++ + N+I+
Sbjct: 195 KVP-SPSSSSSSKTDKDTLHSPLGTIHAEKIISNKIS 230
>DICTYBASE|DDB_G0285205 [details] [associations]
symbol:snf2a "SNF2-related protein SNF2a"
species:44689 "Dictyostelium discoideum" [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0044351 "macropinocytosis" evidence=RCA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR017956
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00384
SMART:SM00490 dictyBase:DDB_G0285205 GO:GO:0005524 GO:GO:0003677
EMBL:AAFI02000075 GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 KO:K11647 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 PROSITE:PS51204 RefSeq:XP_638342.2
ProteinModelPortal:Q54NM0 STRING:Q54NM0 PRIDE:Q54NM0
EnsemblProtists:DDB0233441 GeneID:8624967 KEGG:ddi:DDB_G0285205
OMA:HASKHRV Uniprot:Q54NM0
Length = 1604
Score = 788 (282.4 bits), Expect = 3.6e-73, Sum P(3) = 3.6e-73
Identities = 189/494 (38%), Positives = 281/494 (56%)
Query: 746 EQPEELKGGALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKAK 805
EQP+ + GG L +Q+ L WL + ++ N ILADEMGLGKTV AFIS LY +
Sbjct: 614 EQPDLMTGGKLKEYQVTGLEWLISLYTRNLNGILADEMGLGKTVQTIAFISFLYERMNVR 673
Query: 806 LPCLVLVPLSTMPNWLAEFALWAPNLNVVEYHGCAKARAIIRQYEWHASDPDNLNKKTSS 865
P LV+ PLST+ NW++EFA W+P L+V+ Y G R E + P N
Sbjct: 674 EPFLVVAPLSTISNWVSEFARWSPKLHVIVYKGKQDERR-----ETARTIPRNA------ 722
Query: 866 YKFNVLLTTYEMILADSSHLRGVPWEVLVVDEGHRXXXXXXXXXXXXXXXXXQHRVLLTG 925
F V++T++E I+ D L V W +++DEGHR ++R+LLTG
Sbjct: 723 --FCVVITSFEYIIKDRKTLGRVHWIYIIIDEGHRIKNKNSKLSVQLRQYHSRNRLLLTG 780
Query: 926 TPLQNNIGEMYNLLNFLQPASFPSLSSFEEKFN--------DLTTTQKVEELKKLVAPH- 976
TPLQN++GE++ LLNFL P F S +F+ FN +L + E L + H
Sbjct: 781 TPLQNDLGELWALLNFLLPTIFNSADTFQNWFNAPFQAKGKNLINVNEEESLIIINRLHQ 840
Query: 977 -----MLRRLKKDAMQNIPPKTERMVPVELSSIQAEYYRAMLTKNYQIL-----RNIGKG 1026
+LRRLK D +P K E+++ +S++Q YR+++ Y +L G+
Sbjct: 841 VLRFFLLRRLKSDVESQLPDKKEKVIKCNMSALQIAMYRSLV--EYGVLPIDPDSKEGRS 898
Query: 1027 --VAQQSMLNIVMQLRKVCNHPYLIPGTEPDSGSVEFLHEMRIKASAKLTLLHSMLKVLY 1084
+ + NIV QL+K+CNHPYL E D ++E I+ S K + +L ++
Sbjct: 899 GRLKMKGFNNIVKQLQKICNHPYLFKD-EWD------INEDLIRTSGKFDTMDQILTKMH 951
Query: 1085 KEGHRVLIFSQMTKLLDILEDYLNIEFGPKTYERVDGSVSVGDRQAAITRFNQDKSRF-V 1143
HRVLIF+QMT++++++E+Y +++ T+ R+DGS +R + +N+ S F +
Sbjct: 952 ASKHRVLIFTQMTEVINLMEEYFSLK--EWTFLRLDGSTKPEERAHLVVEWNRPDSPFWI 1009
Query: 1144 FLLSTRSCGLGINLATADTVIIYDSDFNPHADIQAMNRAHRIGQSKRLLVYRLVVRASVE 1203
F+LST + GLG+NL TADTVII+DSD+NP D+QA +R HRIGQ+ + V+RL+ S+E
Sbjct: 1010 FVLSTHAGGLGMNLQTADTVIIFDSDWNPQMDLQAQDRCHRIGQTNSVSVFRLISANSIE 1069
Query: 1204 ERILQLAKKKLMLD 1217
E+IL A KL +D
Sbjct: 1070 EKILGRATDKLEID 1083
Score = 43 (20.2 bits), Expect = 3.6e-73, Sum P(3) = 3.6e-73
Identities = 9/41 (21%), Positives = 18/41 (43%)
Query: 32 SNGKEENLVTSESPRNTPSAKRRLKNEINADRSSTKKKGND 72
+N N + + NT + + N N + ++T GN+
Sbjct: 225 NNNNNNNNNNNNNNNNTSANGNNINNNNNNNNNTTNTNGNN 265
Score = 43 (20.2 bits), Expect = 3.6e-73, Sum P(3) = 3.6e-73
Identities = 25/115 (21%), Positives = 45/115 (39%)
Query: 1253 MGENNTSIEEAVRDLEQKHRKRGGGLGDVYQDKCTEGSTK----IVWDENAIARLLDRSN 1308
M E N + E+ LE K K G D + K +G ++ DE++ LD
Sbjct: 1217 MIEKNMTFEQYKAHLEAKKLKNGKSKKDGEKSKKKKGKSRGRKNKSDDEDSSDDELDDEG 1276
Query: 1309 LQSGSTDLAEGDLENDMLGSVKATEWNEETTEDQAESPVAAVDDASAENSERKEE 1363
+ S D + N+ + K N++ + + V+ A +RK++
Sbjct: 1277 ISSDDDDNNINNNNNNNDNNNKNNNNNDDEETGAIQKQI--VERRRATPQQRKQQ 1329
>ZFIN|ZDB-GENE-041014-72 [details] [associations]
symbol:ino80 "INO80 homolog (S. cerevisiae)"
species:7955 "Danio rerio" [GO:0016817 "hydrolase activity, acting
on acid anhydrides" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF13892
PROSITE:PS51194 PROSITE:PS51413 SMART:SM00490
ZFIN:ZDB-GENE-041014-72 GO:GO:0005524 GO:GO:0003677 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 EMBL:BX897725
HOGENOM:HOG000231795 HOVERGEN:HBG057875 OMA:KVIRKFW IPI:IPI00516098
UniGene:Dr.84310 ProteinModelPortal:Q5RGG8 STRING:Q5RGG8
InParanoid:Q5RGG8 Uniprot:Q5RGG8
Length = 1582
Score = 432 (157.1 bits), Expect = 7.7e-72, Sum P(3) = 7.7e-72
Identities = 109/324 (33%), Positives = 170/324 (52%)
Query: 747 QPEELKGGALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKAKL 806
QP + G L +QL+ +NWL + + N ILADEMGLGKTV + A ++ L
Sbjct: 511 QPT-IFNGKLKGYQLKGMNWLANLYEQGINGILADEMGLGKTVQSIALLAHLAERENIWG 569
Query: 807 PCLVLVPLSTMPNWLAEFALWAPNLNVVEYHGCAKARAIIRQYEWHASDPDNLNKKTSSY 866
P L++ P ST+ NW EF+ + P V+ Y G R +IR++ W T +
Sbjct: 570 PFLIISPASTLNNWHQEFSRFVPKFKVLPYWGNPHDRKVIRKF-WSQK-----TLYTQNA 623
Query: 867 KFNVLLTTYEMILADSSHLRGVPWEVLVVDEGHRXXXXXXXXXXXXXXXXXQHRVLLTGT 926
F+V++T+Y++++ D + + V W+ +V+DE ++R+LLTGT
Sbjct: 624 PFHVVITSYQLVVQDVKYFQRVKWQYMVLDEAQALKSSTSVRWKILLQFQCRNRLLLTGT 683
Query: 927 PLQNNIGEMYNLLNFLQPASFPSLSSFEEKFN-DLTTTQK----VEE-----LKKLVAPH 976
P+QN + E++ LL+F+ P F S F E F+ D+ + + ++E L ++ P
Sbjct: 684 PIQNTMAELWALLHFIMPTLFDSHEEFNEWFSKDIESHAENKSAIDENQLSRLHMILKPF 743
Query: 977 MLRRLKKDAMQNIPPKTERMVPVELSSIQAEYYRAMLTK-NYQILRNIGKGVAQQ----- 1030
MLRR+KKD + K E + +L+S Q Y+A+ K + + L G AQQ
Sbjct: 744 MLRRIKKDVENELSDKIEILTYCQLTSRQRLLYQALKNKISIEDLLQSSMGSAQQAHSTT 803
Query: 1031 -SMLNIVMQLRKVCNHPYLIPGTE 1053
S++N+VMQ RKVCNHP L E
Sbjct: 804 SSLMNLVMQFRKVCNHPDLFERQE 827
Score = 395 (144.1 bits), Expect = 7.7e-72, Sum P(3) = 7.7e-72
Identities = 92/213 (43%), Positives = 131/213 (61%)
Query: 1064 EMRIKASAKLTLLHSMLKVLYKEGHRVLIFSQMTKLLDILEDYLNIEFGPKTYERVDGSV 1123
E I S KL L +L L +GHRVLI+SQMT+++D+LE+Y+ + TY R+DGS
Sbjct: 1125 ESLITDSGKLHTLDLLLTRLKSQGHRVLIYSQMTRMIDLLEEYM--VYRKHTYMRLDGSS 1182
Query: 1124 SVGDRQAAITRFNQDKSRFVFLLSTRSCGLGINLATADTVIIYDSDFNPHADIQAMNRAH 1183
+ +R+ + F FVFLLSTR+ GLGINL ADTVI YDSD+NP D QAM+RAH
Sbjct: 1183 KISERRDMVADFQSRTDIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTVDQQAMDRAH 1242
Query: 1184 RIGQSKRLLVYRLVVRASVEERILQLAKKKLMLDQLFVNKSGSQKEVEDILRWGTEELFN 1243
R+GQ+K++ VYRL+ + ++EERILQ AK+K + ++ + SG + + + L
Sbjct: 1243 RLGQTKQVTVYRLICKGTIEERILQRAKEKSEIQRMVI--SGGNFKPDTLKPKEVVSLLL 1300
Query: 1244 DSPGINGKDM--GENNTSIEEAVRDLEQKHRKR 1274
D + K E +EE+ + E+K RKR
Sbjct: 1301 DDEELEKKLRLRQEEKRQLEESSKVKERK-RKR 1332
Score = 54 (24.1 bits), Expect = 7.7e-72, Sum P(3) = 7.7e-72
Identities = 20/83 (24%), Positives = 42/83 (50%)
Query: 633 QLKVLAKRKLENYKAKYGTTVINICDERWKQPQRVISLRSSKDGTREAFVKWTGLPYDEC 692
Q K + R+L++Y+ Y T +++ D ++Q + ++ L+ K E K L +
Sbjct: 176 QSKFHSDRELQHYQ-HYSTGLLSTHDPFYEQQRHLLGLKKKKI-KEEKKCK-AKLKKMKR 232
Query: 693 TWEKLDEPALEKYSHLTDLFVQF 715
++ +E ++E H+T F +F
Sbjct: 233 KKKRGEEFSMEGRQHITKTFAKF 255
Score = 42 (19.8 bits), Expect = 5.4e-31, Sum P(3) = 5.4e-31
Identities = 15/48 (31%), Positives = 24/48 (50%)
Query: 977 MLRRLKKDAMQN-IPPKTERMVPVELSSIQAEYYRAMLTKN----YQI 1019
+LR+L+ ++ Q I MV V ++YY++ KN YQI
Sbjct: 415 ILRKLEDNSSQRQIDIGGGVMVNVSQEDYDSDYYKSQALKNAKEAYQI 462
>ZFIN|ZDB-GENE-070912-179 [details] [associations]
symbol:chd7 "chromodomain helicase DNA binding
protein 7" species:7955 "Danio rerio" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0016817 "hydrolase
activity, acting on acid anhydrides" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0007368 "determination of left/right symmetry"
evidence=IMP] [GO:0001756 "somitogenesis" evidence=IMP] [GO:0060041
"retina development in camera-type eye" evidence=IMP] [GO:0021602
"cranial nerve morphogenesis" evidence=IMP] [GO:0001947 "heart
looping" evidence=IMP] [GO:0030282 "bone mineralization"
evidence=IMP] [GO:0042472 "inner ear morphogenesis" evidence=IMP]
[GO:0014029 "neural crest formation" evidence=IMP]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271 Pfam:PF07533
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
SMART:SM00592 Pfam:PF00385 ZFIN:ZDB-GENE-070912-179 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0001756 GO:GO:0042472
GO:GO:0060041 GO:GO:0004386 GO:GO:0001947 GO:GO:0030282
InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR023780 GeneTree:ENSGT00560000077077
GO:GO:0021602 EMBL:CR450710 GO:GO:0014029 IPI:IPI00493585
Ensembl:ENSDART00000016208 Ensembl:ENSDART00000135230
Uniprot:F1QGL1
Length = 3140
Score = 787 (282.1 bits), Expect = 1.6e-71, Sum P(3) = 1.6e-71
Identities = 210/590 (35%), Positives = 305/590 (51%)
Query: 588 GSVAKRVQEPAVTESAQVKGKAVSYE-FLVKWVGKSNIHNSW--IPESQLKVLAKRKLEN 644
G V +++ + + G+ + E F VK+ G S +H W I E + ++K++
Sbjct: 843 GPVVEKIMGMRMGKKELASGEEIEVEEFYVKFKGFSYLHCRWADIEELEKDKRIQQKIKR 902
Query: 645 YKAKYG--TTVINICDERWK----QPQRVISLRSSKDGTREA----FVKWTGLPYDECTW 694
++AK T V + DE + + RV+ + S D E VKW LPY++ TW
Sbjct: 903 FRAKQALSTFVTEMDDEPFNPDYVEVDRVLDVSESTDENGELVTLYLVKWCSLPYEDSTW 962
Query: 695 E-KLDEPALEKYSHLTDLFVQFERQTLKK-DASEDELPRGKGDCQQSEIVALTEQPEELK 752
E K D ++ +FER ++ E P D Q+SE E
Sbjct: 963 ELKADIDQVK--------IEEFERVMAREPQLKRVERPP-TSDWQKSE-----SSREYKN 1008
Query: 753 GGALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLV 812
AL +QLE +NWL W+ ++N ILADEMGLGKT+ + F+ +Y + P LV+
Sbjct: 1009 ANALREYQLEGVNWLLFNWYNTRNCILADEMGLGKTIQSITFLYEIYLK-GIHGPFLVIA 1067
Query: 813 PLSTMPNWLAEFALWAPNLNVVEYHGCAKARAIIRQYEWHASDPDNLNKKTSSYKFNVLL 872
PLST+PNW EF W LNVV YHG +R I+ YE + D K +YKF+ ++
Sbjct: 1068 PLSTIPNWEREFRTWT-ELNVVVYHGSQASRKTIQAYEMYYRDTQGRIIK-GAYKFHAVI 1125
Query: 873 TTYEMILADSSHLRGVPWEVLVVDEGHRXXXXXXXXXXXXXXXXXQHRVLLTGTPLQNNI 932
TT+EMIL D LR VPW +++DE HR +H+VLLTGTPLQN +
Sbjct: 1126 TTFEMILTDCPELRNVPWRCVIIDEAHRLKNRNCKLLEGLKMMDMEHKVLLTGTPLQNTV 1185
Query: 933 GEMYNLLNFLQPASFPSLSSFEEKFNDLTTTQKVEELKKLVAPHMLRRLKKDAMQNIPPK 992
E+++LLNFL+P FPS S+F ++F DL T ++V++L+ ++ P MLRRLK+D +N+ PK
Sbjct: 1186 EELFSLLNFLEPDRFPSESTFMQEFGDLKTEEQVQKLQGILKPMMLRRLKEDVEKNLAPK 1245
Query: 993 TERMVPVELSSIQAEYYRAMLTKNYQILRNIGKGVAQ--------QSMLNIVMQLRKVCN 1044
E ++ VEL+++Q +YYRA+L KN+ L G G ++LN +M+LRK CN
Sbjct: 1246 EETIIEVELTNVQKKYYRAILEKNFAFLSKSGAGGGSGGGGGSNVPNLLNTMMELRKCCN 1305
Query: 1045 HPYLIPGTEPDSGSVEFLHEMRIKASAKLTLLHSMLKVLYKEGHRVLIFSQMTKL----- 1099
HPYLI G E + + E R H + ++ G VLI + KL
Sbjct: 1306 HPYLINGAEE-----KIMEEFRETHPLDQPEFH-LQAMIQAAGKLVLIDKLLPKLKAGGH 1359
Query: 1100 --LDILE-----DYLNIEFGPKTY--ERVDGSVSVGDRQAAITRFNQDKS 1140
L + D L + Y ER+DG V RQAAI RF++ S
Sbjct: 1360 RVLIFSQMVRCLDILEDYLIQRRYPYERIDGRVRGNLRQAAIDRFSRPDS 1409
Score = 460 (167.0 bits), Expect = 3.1e-36, Sum P(3) = 3.1e-36
Identities = 115/237 (48%), Positives = 141/237 (59%)
Query: 1024 GKGVAQQSMLNIVMQLRKVCNHPYLIPGTEPDS----------GSVEFLHEMRIKASAKL 1073
G G ++LN +M+LRK CNHPYLI G E EF + I+A+ KL
Sbjct: 1285 GGGSNVPNLLNTMMELRKCCNHPYLINGAEEKIMEEFRETHPLDQPEFHLQAMIQAAGKL 1344
Query: 1074 TLLHSMLKVLYKEGHRVLIFSQMTKLLDILEDYLNIEFGPKTYERVDGSVSVGDRQAAIT 1133
L+ +L L GHRVLIFSQM + LDILEDYL P YER+DG V RQAAI
Sbjct: 1345 VLIDKLLPKLKAGGHRVLIFSQMVRCLDILEDYLIQRRYP--YERIDGRVRGNLRQAAID 1402
Query: 1134 RFNQ-DKSRFVFLLSTRSCGLGINLATADTVIIYDSDFNPHADIQAMNRAHRIGQSKRLL 1192
RF++ D RFVFLL TR+ GLGINL ADT II+DSD+NP D+QA R HRIGQSK +
Sbjct: 1403 RFSRPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKSVK 1462
Query: 1193 VYRLVVRASVEERILQLAKKKLMLDQLFVNK-SG-----------SQKEVEDILRWG 1237
+YRL+ R S E + A KL LD+ + SG S+KE+ED+LR G
Sbjct: 1463 IYRLITRNSYEREMFDKASLKLGLDKAVLQSMSGRENAANGVQQLSKKEIEDLLRKG 1519
Score = 47 (21.6 bits), Expect = 8.1e-71, Sum P(4) = 8.1e-71
Identities = 12/43 (27%), Positives = 25/43 (58%)
Query: 1335 NEETTEDQAESPVAAVDDASAENSERKEENAVTGIEE--NEWD 1375
+EE E+Q + + V++ S E+ + ++ A++ +E NE D
Sbjct: 2239 DEEVKEEQGDVTLPKVENGSIEDVKEEKSEALSPKKEVKNEED 2281
Score = 44 (20.5 bits), Expect = 1.6e-71, Sum P(3) = 1.6e-71
Identities = 14/49 (28%), Positives = 21/49 (42%)
Query: 21 KRRKLPCGPGLSNGKEENLVTSESPRNTPSAKRRLKNEINADRSSTKKK 69
K K P P +E V + +P+ S K K + +STKK+
Sbjct: 716 KTPKTPKTPKEPKEPKEKKVKTATPKPKSSKKPSAKKSDSESGNSTKKE 764
Score = 44 (20.5 bits), Expect = 1.6e-71, Sum P(3) = 1.6e-71
Identities = 20/92 (21%), Positives = 41/92 (44%)
Query: 1276 GGLGDVYQDKCTEGSTKIVWDENA-IARL------LDRSNLQSGSTDLAEGD-LENDMLG 1327
G LG +DK ++ + D NA +A + L+ S+ + A+ L++D+ G
Sbjct: 3047 GALGATGEDKESDKGPRTNQDPNASVADVETADNTLEDSDSEESQNKTADSSVLDDDLAG 3106
Query: 1328 SVKATEWNEETTEDQAESPVAAVDDASAENSE 1359
+ + E +D+ + DD + E+ +
Sbjct: 3107 PAEEMDSMEGGMDDEDDDDDDDDDDPADEDDK 3138
Score = 43 (20.2 bits), Expect = 2.0e-71, Sum P(3) = 2.0e-71
Identities = 15/46 (32%), Positives = 23/46 (50%)
Query: 1311 SGSTDLAEGDLENDMLGSVKATEWN-EETTEDQAESPVAAVDDASA 1355
+ ST+ AE + EN + + T+ +E E QAE V+ A A
Sbjct: 2933 ASSTEQAESE-ENSKPKTDEETKGEGDEKEEKQAEKSSETVESADA 2977
Score = 41 (19.5 bits), Expect = 1.7e-70, Sum P(4) = 1.7e-70
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 579 DVDVGKKTSGSVAKRVQEPAVTESAQ 604
D + G T AKR +EP+VT +
Sbjct: 754 DSESGNSTKKE-AKRKREPSVTSDVE 778
Score = 40 (19.1 bits), Expect = 2.1e-70, Sum P(4) = 2.1e-70
Identities = 32/154 (20%), Positives = 60/154 (38%)
Query: 167 SILARKRSNKGKSVLALGVKSLEKSLDSSQVDVSCSTKPEN--TSAGVPVEGSSSC-PND 223
S L K+ K K+ ++ G + S ++ + + ++ T P E S P +
Sbjct: 644 SELKPKKKKKKKAKVSEGQECNNISSEAGGEVTALMNEGDSLITPVEKPAEKKSKKKPKE 703
Query: 224 DDEKQLNASPTDSLADTKFHPAEEVLPHSQVTKSE----QNDEVPVEKHEKS----STNG 275
+ K+ T T P E P + K+ ++ + P K S ST
Sbjct: 704 KEPKEPKEPKTPKTPKTPKTPKEPKEPKEKKVKTATPKPKSSKKPSAKKSDSESGNSTKK 763
Query: 276 SSGIKFVLAIGAS-ERDRKRKPEVKDEDSQKKLR 308
+ K ++ + E+ + PE +D+D +K R
Sbjct: 764 EAKRKREPSVTSDVEKTPPQSPEEEDDDGVQKRR 797
Score = 39 (18.8 bits), Expect = 8.1e-71, Sum P(4) = 8.1e-71
Identities = 10/39 (25%), Positives = 21/39 (53%)
Query: 1288 EGSTKIVWDENAIARLLDRSNLQSGSTDLAEGDLENDML 1326
+ S K+ D+ + + R N +G L++ ++E D+L
Sbjct: 1479 KASLKLGLDKAVLQSMSGRENAANGVQQLSKKEIE-DLL 1516
Score = 38 (18.4 bits), Expect = 6.8e-71, Sum P(3) = 6.8e-71
Identities = 10/45 (22%), Positives = 22/45 (48%)
Query: 1222 NKSGSQKEVEDILRWGTEELFNDSPGINGKDMGENNTSIEEAVRD 1266
NK+ ++D L EE+ + G++ +D +++ + A D
Sbjct: 3092 NKTADSSVLDDDLAGPAEEMDSMEGGMDDEDDDDDDDDDDPADED 3136
>UNIPROTKB|Q3B7N1 [details] [associations]
symbol:CHD1L "Chromodomain-helicase-DNA-binding protein
1-like" species:9913 "Bos taurus" [GO:0006200 "ATP catabolic
process" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0006974 "response to DNA damage stimulus" evidence=ISS]
[GO:0016887 "ATPase activity" evidence=ISS] [GO:0006338 "chromatin
remodeling" evidence=ISS] [GO:0000166 "nucleotide binding"
evidence=ISS] [GO:0006281 "DNA repair" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR002464
Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0000166
GO:GO:0003677 GO:GO:0006281 GO:GO:0006974 GO:GO:0016887
GO:GO:0006338 HSSP:Q97XQ5 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR002589 PROSITE:PS51154
GO:GO:0008026 EMBL:BC107534 IPI:IPI00710168 RefSeq:NP_001032909.1
UniGene:Bt.18335 ProteinModelPortal:Q3B7N1 PRIDE:Q3B7N1
GeneID:524787 KEGG:bta:524787 CTD:9557 HOGENOM:HOG000030789
HOVERGEN:HBG077542 InParanoid:Q3B7N1 OrthoDB:EOG4SXNBV
NextBio:20874039 Uniprot:Q3B7N1
Length = 897
Score = 733 (263.1 bits), Expect = 1.7e-71, P = 1.7e-71
Identities = 163/391 (41%), Positives = 239/391 (61%)
Query: 867 KFNVLLTTYEMILADSSHLRGVPWEVLVVDEGHRXXXXXXXXXXXXXXXXXQHRVLLTGT 926
+F+VLLTTYE+ L D+S L+ PW VLVVDE HR +LLTGT
Sbjct: 147 RFHVLLTTYEICLKDASFLKSFPWSVLVVDEAHRLKNQSSLLHKTLSEFSVVFSLLLTGT 206
Query: 927 PLQNNIGEMYNLLNFLQPASFPS--LSSFEEKFNDLTT-TQKVEELKKLVAPHMLRRLKK 983
P+QN++ E+Y+LL+F++P F + F +++ D+ ++ EL KL+ P +LRR+K
Sbjct: 207 PIQNSLQELYSLLSFVEPDLFSKEQVEDFVQRYQDIEKESESASELYKLLQPFLLRRVKA 266
Query: 984 DAMQNIPPKTERMVPVELSSIQAEYYRAMLTKNYQILRNIGKGVAQQSMLNIVMQLRKVC 1043
+ +P KTE ++ +S++Q +YY+A+L K+ N + + + N++ QLRK
Sbjct: 267 EVATELPRKTEVVIYHGMSALQKKYYKAILMKDLDAFEN--ETAKKVKLQNVLSQLRKCV 324
Query: 1044 NHPYLIPGTEPDSGSVEFLHEMRIKASAKLTLLHSMLKVLYKEGHRVLIFSQMTKLLDIL 1103
+HPYL G EP+ + + I+AS KL LL +L LY +GHRVL+FSQMT++LDIL
Sbjct: 325 DHPYLFDGVEPEPFEIG---DHLIEASGKLHLLDKLLAFLYSKGHRVLLFSQMTQMLDIL 381
Query: 1104 EDYLNIEFGPKTYERVDGSVSVGDRQAAITRFNQDKSRFVFLLSTRSCGLGINLATADTV 1163
+DYL ++ +YERVDGSV +R AI F Q F FLLSTR+ G+G+NL ADTV
Sbjct: 382 QDYL--DYRGYSYERVDGSVRGEERHLAIKNFGQQPI-FTFLLSTRAGGVGMNLTAADTV 438
Query: 1164 IIYDSDFNPHADIQAMNRAHRIGQSKRLLVYRLVVRASVEERILQLAKKKLMLDQLFVNK 1223
I +DSDFNP D+QA RAHRIGQ+K + V RL+ R +VEE + + A KL L +
Sbjct: 439 IFFDSDFNPQNDLQAAARAHRIGQNKSVKVIRLIGRDTVEEIVYRKAASKLQLTNTIIEG 498
Query: 1224 S----GSQK-------EVEDILRWGTEELFN 1243
G+QK ++ +IL++G ++L +
Sbjct: 499 GHFTLGAQKPAADADLQLSEILKFGLDKLLS 529
Score = 681 (244.8 bits), Expect = 6.6e-66, P = 6.6e-66
Identities = 154/390 (39%), Positives = 225/390 (57%)
Query: 751 LKGGALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLV 810
L G L P+QL+ +NWL +C+H IL DEMGLGKT A L + P L+
Sbjct: 43 LTGIHLRPYQLQGVNWLAQCFHCQNGCILGDEMGLGKTCQTIALFIYLAGRLNDEGPFLI 102
Query: 811 LVPLSTMPNWLAEFALWAPNLNVVEYHGCAKARAIIRQYEWHASDPDNLNKKTSSYKFNV 870
L PLS + NW E +AP L+ V Y G RA ++Q +L +++ +F+V
Sbjct: 103 LCPLSVLSNWKEEMERFAPGLSCVTYAGDKDKRACLQQ---------DLKQES---RFHV 150
Query: 871 LLTTYEMILADSSHLRGVPWEVLVVDEGHRXXXXXXXXXXXXXXXXXQHRVLLTGTPLQN 930
LLTTYE+ L D+S L+ PW VLVVDE HR +LLTGTP+QN
Sbjct: 151 LLTTYEICLKDASFLKSFPWSVLVVDEAHRLKNQSSLLHKTLSEFSVVFSLLLTGTPIQN 210
Query: 931 NIGEMYNLLNFLQPASFPS--LSSFEEKFNDLTT-TQKVEELKKLVAPHMLRRLKKDAMQ 987
++ E+Y+LL+F++P F + F +++ D+ ++ EL KL+ P +LRR+K +
Sbjct: 211 SLQELYSLLSFVEPDLFSKEQVEDFVQRYQDIEKESESASELYKLLQPFLLRRVKAEVAT 270
Query: 988 NIPPKTERMVPVELSSIQAEYYRAMLTKNYQILRNIGKGVAQQSMLNIVMQLRKVCNHPY 1047
+P KTE ++ +S++Q +YY+A+L K+ N + + + N++ QLRK +HPY
Sbjct: 271 ELPRKTEVVIYHGMSALQKKYYKAILMKDLDAFEN--ETAKKVKLQNVLSQLRKCVDHPY 328
Query: 1048 LIPGTEPDSGSVEFLHEMRIKASAKLTLLHSMLKVLYKEGHRVLIFSQMTKLLDILEDYL 1107
L G EP+ + + I+AS KL LL +L LY +GHRVL+FSQMT++LDIL+DYL
Sbjct: 329 LFDGVEPEPFEIG---DHLIEASGKLHLLDKLLAFLYSKGHRVLLFSQMTQMLDILQDYL 385
Query: 1108 NIEFGPKTYERVDGSVSVGDRQAAITRFNQ 1137
++ +YERVDGSV +R AI F Q
Sbjct: 386 --DYRGYSYERVDGSVRGEERHLAIKNFGQ 413
>UNIPROTKB|F1SSV0 [details] [associations]
symbol:INO80 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:2000045 "regulation of G1/S transition of mitotic cell
cycle" evidence=IEA] [GO:0071479 "cellular response to ionizing
radiation" evidence=IEA] [GO:0070914 "UV-damage excision repair"
evidence=IEA] [GO:0051225 "spindle assembly" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0043014 "alpha-tubulin
binding" evidence=IEA] [GO:0034644 "cellular response to UV"
evidence=IEA] [GO:0031011 "Ino80 complex" evidence=IEA] [GO:0030307
"positive regulation of cell growth" evidence=IEA] [GO:0016887
"ATPase activity" evidence=IEA] [GO:0010571 "positive regulation of
DNA replication involved in S phase" evidence=IEA] [GO:0006338
"chromatin remodeling" evidence=IEA] [GO:0003678 "DNA helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0000724 "double-strand break repair via homologous
recombination" evidence=IEA] [GO:0000070 "mitotic sister chromatid
segregation" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF13892 PROSITE:PS51194
PROSITE:PS51413 SMART:SM00490 GO:GO:0005524 GO:GO:0030307
GO:GO:0051225 GO:GO:0003677 GO:GO:0045944 GO:GO:0016887
GO:GO:0006338 GO:GO:0000070 GO:GO:0031011 GO:GO:0000724
GO:GO:0034644 GO:GO:0071479 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0003678 GO:GO:0070914 GO:GO:2000045
GO:GO:0010571 KO:K11665 CTD:54617 GeneTree:ENSGT00680000100052
OMA:KVIRKFW EMBL:FP015925 RefSeq:XP_003121636.1 UniGene:Ssc.45003
Ensembl:ENSSSCT00000005252 GeneID:100517567 KEGG:ssc:100517567
Uniprot:F1SSV0
Length = 1566
Score = 428 (155.7 bits), Expect = 2.2e-71, Sum P(2) = 2.2e-71
Identities = 108/324 (33%), Positives = 168/324 (51%)
Query: 747 QPEELKGGALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKAKL 806
QP + G L +QL+ +NWL + + N ILADEMGLGKTV + A ++ L
Sbjct: 519 QPT-IFNGKLKGYQLKGMNWLANLYEQGINGILADEMGLGKTVQSIALLAHLAERENIWG 577
Query: 807 PCLVLVPLSTMPNWLAEFALWAPNLNVVEYHGCAKARAIIRQYEWHASDPDNLNKKTSSY 866
P L++ P ST+ NW EF + P V+ Y G R +IR++ W T
Sbjct: 578 PFLIISPASTLNNWHQEFTRFVPKFKVLPYWGNPHDRKVIRRF-WSQK-----TLYTQDA 631
Query: 867 KFNVLLTTYEMILADSSHLRGVPWEVLVVDEGHRXXXXXXXXXXXXXXXXXQHRVLLTGT 926
F+V++T+Y++++ D + + V W+ +V+DE ++R+LLTGT
Sbjct: 632 PFHVVITSYQLVVQDVKYFQRVKWQYMVLDEAQALKSSSSVRWKILLQFQCRNRLLLTGT 691
Query: 927 PLQNNIGEMYNLLNFLQPASFPSLSSFEEKFN-DLTTTQK----VEE-----LKKLVAPH 976
P+QN + E++ LL+F+ P F S F E F+ D+ + + ++E L ++ P
Sbjct: 692 PIQNTMAELWALLHFIMPTLFDSHEEFNEWFSKDIESHAENKSAIDENQLSRLHMILKPF 751
Query: 977 MLRRLKKDAMQNIPPKTERMVPVELSSIQAEYYRAMLTK-NYQILRNIGKGVAQQ----- 1030
MLRR+KKD + K E ++ +L+S Q Y+A+ K + + L G QQ
Sbjct: 752 MLRRIKKDVENELSDKIEILMYCQLTSRQKLLYQALKNKISIEDLLQSSMGSTQQAQTTT 811
Query: 1031 -SMLNIVMQLRKVCNHPYLIPGTE 1053
S++N+VMQ RKVCNHP L E
Sbjct: 812 SSLMNLVMQFRKVCNHPELFERQE 835
Score = 395 (144.1 bits), Expect = 2.2e-71, Sum P(2) = 2.2e-71
Identities = 88/212 (41%), Positives = 130/212 (61%)
Query: 1064 EMRIKASAKLTLLHSMLKVLYKEGHRVLIFSQMTKLLDILEDYLNIEFGPKTYERVDGSV 1123
E I S KL L +L L +GHRVLI+SQMT+++D+LE+Y+ + TY R+DGS
Sbjct: 1104 ESLITDSGKLYALDVLLTRLKSQGHRVLIYSQMTRMIDLLEEYM--VYRKHTYMRLDGSS 1161
Query: 1124 SVGDRQAAITRFNQDKSRFVFLLSTRSCGLGINLATADTVIIYDSDFNPHADIQAMNRAH 1183
+ +R+ + F FVFLLSTR+ GLGINL ADTVI YDSD+NP D QAM+RAH
Sbjct: 1162 KISERRDMVADFQNRNDIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTVDQQAMDRAH 1221
Query: 1184 RIGQSKRLLVYRLVVRASVEERILQLAKKKLMLDQLFVNKSGSQKEVEDILRWGTEELFN 1243
R+GQ+K++ VYRL+ + ++EERILQ AK+K + ++ + SG + + + L
Sbjct: 1222 RLGQTKQVTVYRLICKGTIEERILQRAKEKSEIQRMVI--SGGNFKPDTLKPKEVVSLLL 1279
Query: 1244 DSPGINGK-DMGENNTSIEEAVRDLEQKHRKR 1274
D + K + + +E ++++ RKR
Sbjct: 1280 DDEELEKKLRLRQEEKRQQEETNRVKERKRKR 1311
Score = 38 (18.4 bits), Expect = 2.7e-30, Sum P(2) = 2.7e-30
Identities = 14/60 (23%), Positives = 27/60 (45%)
Query: 830 NLNVVEYHGCAKARAIIRQYEWHASDPDNLNKKTSSYKFNV--LLTTYEMILADSSHLRG 887
NL+ E H + + +Y+ + + +K+ Y++ LL+TY+ HL G
Sbjct: 160 NLSREELHNMLR----LHKYKKLHQNKYSKDKELQQYQYYSAGLLSTYDPFYEQQRHLLG 215
>RGD|1311935 [details] [associations]
symbol:Chd1l "chromodomain helicase DNA binding protein 1-like"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=ISO] [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISO] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0005886 "plasma membrane"
evidence=ISO] [GO:0006200 "ATP catabolic process" evidence=ISO]
[GO:0006338 "chromatin remodeling" evidence=ISO] [GO:0006974
"response to DNA damage stimulus" evidence=ISO] [GO:0016887 "ATPase
activity" evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 RGD:1311935 GO:GO:0005886
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0003677
GO:GO:0006974 GO:GO:0016887 GO:GO:0006338 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR002589
PROSITE:PS51154 OrthoDB:EOG4SXNBV GeneTree:ENSGT00670000098110
IPI:IPI00560655 Ensembl:ENSRNOT00000043937 UCSC:RGD:1311935
ArrayExpress:D4ACG6 Uniprot:D4ACG6
Length = 903
Score = 705 (253.2 bits), Expect = 2.2e-71, Sum P(2) = 2.2e-71
Identities = 162/390 (41%), Positives = 232/390 (59%)
Query: 868 FNVLLTTYEMILADSSHLRGVPWEVLVVDEGHRXXXXXXXXXXXXXXXXXQHRVLLTGTP 927
F+VLLTTYE+ L D+S L+ W VL VDE HR R+LLTGTP
Sbjct: 140 FHVLLTTYEICLKDASFLKSFSWSVLAVDEAHRLKNQSSLLHRTLSEFSVVFRLLLTGTP 199
Query: 928 LQNNIGEMYNLLNFLQPASF--PSLSSFEEKFNDLTTTQK-VEELKKLVAPHMLRRLKKD 984
+QN++ E+Y+LL+ ++P F + F + + D+ K EL +L+ P +LRR+K
Sbjct: 200 IQNSLQELYSLLSVVEPDLFCREQVEDFVQCYQDIEKESKSASELHRLLRPFLLRRVKAQ 259
Query: 985 AMQNIPPKTERMVPVELSSIQAEYYRAMLTKNYQILRNIGKGVAQQSMLNIVMQLRKVCN 1044
+P KTE ++ +S++Q +YY+A+L K+ N + + + N++ QLRK +
Sbjct: 260 VATELPKKTEVVIYHGMSALQKKYYKAILMKDLDAFEN--ETAKKVKLQNVLTQLRKCVD 317
Query: 1045 HPYLIPGTEPDSGSVEFLHEMRIKASAKLTLLHSMLKVLYKEGHRVLIFSQMTKLLDILE 1104
HPYL G EP+ V E I+AS KL LL +L LY GHRVL+FSQMT +LDIL+
Sbjct: 318 HPYLFDGVEPEPFEVG---EHLIEASGKLHLLDRLLAFLYSGGHRVLLFSQMTHMLDILQ 374
Query: 1105 DYLNIEFGPKTYERVDGSVSVGDRQAAITRFNQDKSRFVFLLSTRSCGLGINLATADTVI 1164
DY+ ++ +YERVDGSV +R AI F + FVFLLSTR+ G+G+NL ADTVI
Sbjct: 375 DYM--DYRGYSYERVDGSVRGEERHLAIKNFGKQPI-FVFLLSTRAGGVGMNLTAADTVI 431
Query: 1165 IYDSDFNPHADIQAMNRAHRIGQSKRLLVYRLVVRASVEERILQLAKKKLMLDQLFVNKS 1224
DSDFNP D+QA RAHRIGQ+K + V RL+ R +VEE + + A KL L + +
Sbjct: 432 FVDSDFNPQNDLQAAARAHRIGQNKSVKVIRLIGRDTVEEIVYRKAASKLQLTNMVIEGG 491
Query: 1225 ----GSQK-------EVEDILRWGTEELFN 1243
G+QK ++ +IL++G ++L +
Sbjct: 492 HFTLGAQKPAAEADLQLSEILKFGLDKLLS 521
Score = 644 (231.8 bits), Expect = 7.4e-62, Sum P(2) = 7.4e-62
Identities = 152/390 (38%), Positives = 217/390 (55%)
Query: 751 LKGGALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLV 810
L G L +QLE +NWL +C+H IL DEMGLGKT A + L + P L+
Sbjct: 35 LTGIRLRSYQLEGVNWLVQCFHGQNGCILGDEMGLGKTCQTIALLIYLVGRLNDEGPFLI 94
Query: 811 LVPLSTMPNWLAEFALWAPNLNVVEYHGCAKARAIIRQYEWHASDPDNLNKKTSSYKFNV 870
L PLS + NW E +AP L+ V Y G + RA +Q +L +++ F+V
Sbjct: 95 LCPLSVLSNWKEEMERFAPGLSCVTYTGDKEERARRQQ---------DLRQESG---FHV 142
Query: 871 LLTTYEMILADSSHLRGVPWEVLVVDEGHRXXXXXXXXXXXXXXXXXQHRVLLTGTPLQN 930
LLTTYE+ L D+S L+ W VL VDE HR R+LLTGTP+QN
Sbjct: 143 LLTTYEICLKDASFLKSFSWSVLAVDEAHRLKNQSSLLHRTLSEFSVVFRLLLTGTPIQN 202
Query: 931 NIGEMYNLLNFLQPASF--PSLSSFEEKFNDLTTTQK-VEELKKLVAPHMLRRLKKDAMQ 987
++ E+Y+LL+ ++P F + F + + D+ K EL +L+ P +LRR+K
Sbjct: 203 SLQELYSLLSVVEPDLFCREQVEDFVQCYQDIEKESKSASELHRLLRPFLLRRVKAQVAT 262
Query: 988 NIPPKTERMVPVELSSIQAEYYRAMLTKNYQILRNIGKGVAQQSMLNIVMQLRKVCNHPY 1047
+P KTE ++ +S++Q +YY+A+L K+ N + + + N++ QLRK +HPY
Sbjct: 263 ELPKKTEVVIYHGMSALQKKYYKAILMKDLDAFEN--ETAKKVKLQNVLTQLRKCVDHPY 320
Query: 1048 LIPGTEPDSGSVEFLHEMRIKASAKLTLLHSMLKVLYKEGHRVLIFSQMTKLLDILEDYL 1107
L G EP+ V E I+AS KL LL +L LY GHRVL+FSQMT +LDIL+DY+
Sbjct: 321 LFDGVEPEPFEVG---EHLIEASGKLHLLDRLLAFLYSGGHRVLLFSQMTHMLDILQDYM 377
Query: 1108 NIEFGPKTYERVDGSVSVGDRQAAITRFNQ 1137
++ +YERVDGSV +R AI F +
Sbjct: 378 --DYRGYSYERVDGSVRGEERHLAIKNFGK 405
Score = 56 (24.8 bits), Expect = 2.2e-71, Sum P(2) = 2.2e-71
Identities = 18/61 (29%), Positives = 29/61 (47%)
Query: 1304 LDRSNLQSGSTDLAEGDLENDMLGSVKATEWNEETTEDQAESPVAAVDDASAENSERKEE 1363
LD+ L S + + E DL++ +LG K +W + AE ++ S NS KE
Sbjct: 516 LDKL-LSSEGSSMDEIDLKS-ILGETKDGQWTPDALPAAAEGESREQEEGSELNSYGKEN 573
Query: 1364 N 1364
+
Sbjct: 574 H 574
>UNIPROTKB|Q86WJ1 [details] [associations]
symbol:CHD1L "Chromodomain-helicase-DNA-binding protein
1-like" species:9606 "Homo sapiens" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IDA] [GO:0016887 "ATPase activity"
evidence=IMP] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=TAS] [GO:0006338 "chromatin remodeling" evidence=IDA]
[GO:0006281 "DNA repair" evidence=TAS] [GO:0006974 "response to DNA
damage stimulus" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005634 "nucleus" evidence=IDA] [GO:0006200 "ATP
catabolic process" evidence=IMP] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005886
"plasma membrane" evidence=IDA] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR002464 Pfam:PF00176 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490 GO:GO:0005886
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
GO:GO:0003677 GO:GO:0006281 EMBL:AL356378 GO:GO:0006338
GO:GO:0004003 HSSP:Q97XQ5 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR002589 PROSITE:PS51154
CTD:9557 HOVERGEN:HBG077542 OrthoDB:EOG4SXNBV EMBL:AF537213
EMBL:AK001342 EMBL:AK027631 EMBL:EF560738 EMBL:BC001171
EMBL:BC005038 EMBL:BC008649 EMBL:BC043501 EMBL:BC077717
EMBL:AK223496 IPI:IPI00329088 IPI:IPI00854584 IPI:IPI00890729
IPI:IPI00890749 RefSeq:NP_001243265.1 RefSeq:NP_001243266.1
RefSeq:NP_001243267.1 RefSeq:NP_004275.4 RefSeq:NP_078844.2
RefSeq:XP_003960255.1 RefSeq:XP_003960264.1 UniGene:Hs.191164
ProteinModelPortal:Q86WJ1 SMR:Q86WJ1 DIP:DIP-48933N IntAct:Q86WJ1
STRING:Q86WJ1 PhosphoSite:Q86WJ1 DMDM:311033359 PaxDb:Q86WJ1
PRIDE:Q86WJ1 Ensembl:ENST00000369258 Ensembl:ENST00000369259
Ensembl:ENST00000431239 Ensembl:ENST00000579763
Ensembl:ENST00000583055 GeneID:101060601 GeneID:9557
KEGG:hsa:101060601 KEGG:hsa:9557 UCSC:uc001epm.4 UCSC:uc001epo.4
UCSC:uc009wjh.3 GeneCards:GC01P146717 H-InvDB:HIX0000988
H-InvDB:HIX0028745 HGNC:HGNC:1916 HPA:HPA027789 HPA:HPA028670
MIM:613039 neXtProt:NX_Q86WJ1 PharmGKB:PA26452 InParanoid:Q86WJ1
OMA:TCQTIAL PhylomeDB:Q86WJ1 ChiTaRS:CHD1L GenomeRNAi:9557
NextBio:35849 ArrayExpress:Q86WJ1 Bgee:Q86WJ1 CleanEx:HS_CHD1L
Genevestigator:Q86WJ1 Uniprot:Q86WJ1
Length = 897
Score = 729 (261.7 bits), Expect = 4.6e-71, P = 4.6e-71
Identities = 166/390 (42%), Positives = 238/390 (61%)
Query: 867 KFNVLLTTYEMILADSSHLRGVPWEVLVVDEGHRXXXXXXXXXXXXXXXXXQHRVLLTGT 926
+F+VLLTTYE+ L D+S L+ PW VLVVDE HR +LLTGT
Sbjct: 145 RFHVLLTTYEICLKDASFLKSFPWSVLVVDEAHRLKNQSSLLHKTLSEFSVVFSLLLTGT 204
Query: 927 PLQNNIGEMYNLLNFLQPASFPS--LSSFEEKFNDLTT-TQKVEELKKLVAPHMLRRLKK 983
P+QN++ E+Y+LL+F++P F + F +++ D+ ++ EL KL+ P +LRR+K
Sbjct: 205 PIQNSLQELYSLLSFVEPDLFSKEEVGDFIQRYQDIEKESESASELHKLLQPFLLRRVKA 264
Query: 984 DAMQNIPPKTERMVPVELSSIQAEYYRAMLTKNYQILRNIGKGVAQQSMLNIVMQLRKVC 1043
+ +P KTE ++ +S++Q +YY+A+L K+ N + + + NI+ QLRK
Sbjct: 265 EVATELPKKTEVVIYHGMSALQKKYYKAILMKDLDAFEN--ETAKKVKLQNILSQLRKCV 322
Query: 1044 NHPYLIPGTEPDSGSV-EFLHEMRIKASAKLTLLHSMLKVLYKEGHRVLIFSQMTKLLDI 1102
+HPYL G EP+ V + L E AS KL LL +L LY GHRVL+FSQMT++LDI
Sbjct: 323 DHPYLFDGVEPEPFEVGDHLTE----ASGKLHLLDKLLAFLYSGGHRVLLFSQMTQMLDI 378
Query: 1103 LEDYLNIEFGPKTYERVDGSVSVGDRQAAITRFNQDKSRFVFLLSTRSCGLGINLATADT 1162
L+DY+ ++ +YERVDGSV +R AI F Q FVFLLSTR+ G+G+NL ADT
Sbjct: 379 LQDYM--DYRGYSYERVDGSVRGEERHLAIKNFGQQPI-FVFLLSTRAGGVGMNLTAADT 435
Query: 1163 VIIYDSDFNPHADIQAMNRAHRIGQSKRLLVYRLVVRASVEERILQLAKKKLMLDQLFVN 1222
VI DSDFNP D+QA RAHRIGQ+K + V RL+ R +VEE + + A KL L + +
Sbjct: 436 VIFVDSDFNPQNDLQAAARAHRIGQNKSVKVIRLIGRDTVEEIVYRKAASKLQLTNMIIE 495
Query: 1223 KS----GSQK-------EVEDILRWGTEEL 1241
G+QK ++ +IL++G ++L
Sbjct: 496 GGHFTLGAQKPAADADLQLSEILKFGLDKL 525
Score = 660 (237.4 bits), Expect = 2.4e-63, P = 2.4e-63
Identities = 155/391 (39%), Positives = 223/391 (57%)
Query: 751 LKGGALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLV 810
L G L +QLE +NWL + +H IL DEMGLGKT A L + P L+
Sbjct: 41 LTGIHLRSYQLEGVNWLAQRFHCQNGCILGDEMGLGKTCQTIALFIYLAGRLNDEGPFLI 100
Query: 811 LVPLSTMPNWLAEFALWAPNLNVVEYHGCAKARAIIRQYEWHASDPDNLNKKTSSYKFNV 870
L PLS + NW E +AP L+ V Y G + RA ++Q +L +++ +F+V
Sbjct: 101 LCPLSVLSNWKEEMQRFAPGLSCVTYAGDKEERACLQQ---------DLKQES---RFHV 148
Query: 871 LLTTYEMILADSSHLRGVPWEVLVVDEGHRXXXXXXXXXXXXXXXXXQHRVLLTGTPLQN 930
LLTTYE+ L D+S L+ PW VLVVDE HR +LLTGTP+QN
Sbjct: 149 LLTTYEICLKDASFLKSFPWSVLVVDEAHRLKNQSSLLHKTLSEFSVVFSLLLTGTPIQN 208
Query: 931 NIGEMYNLLNFLQPASFPS--LSSFEEKFNDLTT-TQKVEELKKLVAPHMLRRLKKDAMQ 987
++ E+Y+LL+F++P F + F +++ D+ ++ EL KL+ P +LRR+K +
Sbjct: 209 SLQELYSLLSFVEPDLFSKEEVGDFIQRYQDIEKESESASELHKLLQPFLLRRVKAEVAT 268
Query: 988 NIPPKTERMVPVELSSIQAEYYRAMLTKNYQILRNIGKGVAQQSMLNIVMQLRKVCNHPY 1047
+P KTE ++ +S++Q +YY+A+L K+ N + + + NI+ QLRK +HPY
Sbjct: 269 ELPKKTEVVIYHGMSALQKKYYKAILMKDLDAFEN--ETAKKVKLQNILSQLRKCVDHPY 326
Query: 1048 LIPGTEPDSGSV-EFLHEMRIKASAKLTLLHSMLKVLYKEGHRVLIFSQMTKLLDILEDY 1106
L G EP+ V + L E AS KL LL +L LY GHRVL+FSQMT++LDIL+DY
Sbjct: 327 LFDGVEPEPFEVGDHLTE----ASGKLHLLDKLLAFLYSGGHRVLLFSQMTQMLDILQDY 382
Query: 1107 LNIEFGPKTYERVDGSVSVGDRQAAITRFNQ 1137
+ ++ +YERVDGSV +R AI F Q
Sbjct: 383 M--DYRGYSYERVDGSVRGEERHLAIKNFGQ 411
>DICTYBASE|DDB_G0292358 [details] [associations]
symbol:ino80 "CHR group protein" species:44689
"Dictyostelium discoideum" [GO:0016817 "hydrolase activity, acting
on acid anhydrides" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0031011 "Ino80 complex" evidence=ISS]
[GO:0016887 "ATPase activity" evidence=ISS] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0006338 "chromatin remodeling" evidence=ISS] [GO:0006281 "DNA
repair" evidence=ISS] [GO:0006200 "ATP catabolic process"
evidence=ISS] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF13892
PROSITE:PS51194 PROSITE:PS51413 SMART:SM00490
dictyBase:DDB_G0292358 GO:GO:0005524 GenomeReviews:CM000155_GR
GO:GO:0003677 GO:GO:0006281 GO:GO:0016887 GO:GO:0006338
GO:GO:0006366 GO:GO:0031011 GO:GO:0004386 EMBL:AAFI02000189
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
KO:K11665 RefSeq:XP_629681.1 ProteinModelPortal:Q54DG0
STRING:Q54DG0 PRIDE:Q54DG0 EnsemblProtists:DDB0233012
GeneID:8628597 KEGG:ddi:DDB_G0292358 InParanoid:Q54DG0 OMA:MINILED
ProtClustDB:CLSZ2497087 Uniprot:Q54DG0
Length = 2129
Score = 449 (163.1 bits), Expect = 7.4e-71, Sum P(5) = 7.4e-71
Identities = 111/326 (34%), Positives = 174/326 (53%)
Query: 746 EQPEELKGGALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKAK 805
+QP L L P+QL+ + W+ + + N ILADEMGLGKT+ + A ++ L E
Sbjct: 1153 KQPTILNAD-LKPYQLKGMTWIVNLYDQGINGILADEMGLGKTIQSIAVLAHLAEEKNIW 1211
Query: 806 LPCLVLVPLSTMPNWLAEFALWAPNLNVVEYHGCAKARAIIRQYEWHASDPDNLNKKTSS 865
P L++ P ST+ NW EFA + P V+ Y G + R IR+Y W+ P L + S
Sbjct: 1212 GPFLIVTPKSTLHNWKNEFAKFVPAFKVIPYWGTQQQRTTIRKY-WN---PKKLYHRNSP 1267
Query: 866 YKFNVLLTTYEMILADSSHLRGVPWEVLVVDEGHRXXXXXXXXXXXXXXXXXQHRVLLTG 925
F+VL+T+Y +I+ D + + W+ +V+DE H ++R+LLTG
Sbjct: 1268 --FHVLITSYNVIVRDEKYFHRLRWQYMVLDEAHAIKSSASNRWKTLMSFNCRNRLLLTG 1325
Query: 926 TPLQNNIGEMYNLLNFLQPASFPSLSSFEEKFN-DLTT---TQ------KVEELKKLVAP 975
TP+QN++ E++ LL+F+ P F S F E F+ D+ +Q ++ L ++ P
Sbjct: 1326 TPIQNSMAELWALLHFIMPTFFDSHDEFAEWFSKDIENHAMSQGGLNEHQLNRLHMILKP 1385
Query: 976 HMLRRLKKDAMQNIPPKTERMVPVELSSIQAEYYRAMLTKNYQILRNIG-KGVAQQ---- 1030
MLRR+K+D +P KTE V L+ Q + Y++ + N I +G ++Q
Sbjct: 1386 FMLRRIKRDVENEMPSKTEVEVYCNLTHRQKKLYQS-IRSNISITELLGGASFSEQGSMK 1444
Query: 1031 SMLNIVMQLRKVCNHPYLIPGTEPDS 1056
+++N VMQ RKVCNHP +E +S
Sbjct: 1445 ALMNFVMQFRKVCNHPETFKRSECES 1470
Score = 384 (140.2 bits), Expect = 7.4e-71, Sum P(5) = 7.4e-71
Identities = 79/171 (46%), Positives = 114/171 (66%)
Query: 1070 SAKLTLLHSMLKVLYKEGHRVLIFSQMTKLLDILEDYLNIEFGPKTYERVDGSVSVGDRQ 1129
S KL +L +LK L GHRVLI+SQ TK+++ILED++ F Y R+DGS + DR+
Sbjct: 1766 SGKLQVLDKLLKDLKVGGHRVLIYSQFTKMINILEDFMI--FRKYKYLRLDGSSKLDDRR 1823
Query: 1130 AAITRFNQDKSRFVFLLSTRSCGLGINLATADTVIIYDSDFNPHADIQAMNRAHRIGQSK 1189
+ F D S F FLLSTR+CG+GINL +ADTVI YDSD+NP D QA +RAHR+GQ++
Sbjct: 1824 DMVDDFQSDPSIFAFLLSTRACGIGINLTSADTVIFYDSDWNPTVDEQAQDRAHRLGQTR 1883
Query: 1190 RLLVYRLVVRASVEERILQLAKKKLMLDQLFVNKSGSQKEVEDILRWGTEE 1240
+ VYRL+ + ++EE+IL+ AK+K + + + + E++ + G E
Sbjct: 1884 PVTVYRLITKNTIEEKILKRAKQKHQIQSIVIAGGKFESNPEELDQVGENE 1934
Score = 59 (25.8 bits), Expect = 7.4e-71, Sum P(5) = 7.4e-71
Identities = 28/122 (22%), Positives = 50/122 (40%)
Query: 171 RKRSNKGKSVLALGVKSLEKSLDSSQVDVSCSTKPENTSAGVPVEGSSSCPNDDDEKQLN 230
R+RS + + G +S SS ++ + N + P+ SSS N
Sbjct: 359 RERSGRSDRE-SRGDSKSNRSSSSSSSSLNNNNNNNNNNNNNPLSSSSSSSNRQPSTTSP 417
Query: 231 ASPTDSLADTKFHPAEEVLPHSQVTKSEQNDEVPVE---KHEKSST-NGSSGIKFVLAIG 286
P+++L + K P PH + ++ + + KH+ SS+ + SS + G
Sbjct: 418 IMPSNTLFNIK--PIGTTSPHLSSSSNQGLPPISLSSSSKHKLSSSLSSSSSLSSSTNQG 475
Query: 287 AS 288
AS
Sbjct: 476 AS 477
Score = 52 (23.4 bits), Expect = 5.0e-70, Sum P(5) = 5.0e-70
Identities = 30/132 (22%), Positives = 57/132 (43%)
Query: 174 SNKGKSVLALGVKSLEKSLDSSQ----VDVSCSTKPENTSAGVPVEGSSSCPNDDDEKQL 229
SN ++ +G S S S+Q + +S S+K + +S+ SS N +
Sbjct: 421 SNTLFNIKPIGTTSPHLSSSSNQGLPPISLSSSSKHKLSSSLSSSSSLSSSTNQGASSAI 480
Query: 230 NASPTDSLADTKFHPAEEVLPHSQVTKSEQNDEVPVEKHEKSSTNGSSGIKFVLAIGASE 289
++S L+ K P+ + + S P+ + SS+N + VL S+
Sbjct: 481 SSS-ISVLSSPKQSPSMKSMSSSNPALPTL---APLTQLSSSSSNQKNLPNLVLKKAISK 536
Query: 290 RDRKRKPEVKDE 301
+DR++ E+ +E
Sbjct: 537 KDREQLMELLNE 548
Score = 51 (23.0 bits), Expect = 5.0e-70, Sum P(5) = 5.0e-70
Identities = 58/314 (18%), Positives = 108/314 (34%)
Query: 3 DNSSSTSTM-INRNWVLKRKRRKLPCGPGLSNGKEE--NLVTSESPRNTPSAKRRLKNEI 59
D+SSS S + ++ + R R LP ++NG ++ N + +++ N + + N
Sbjct: 74 DSSSSRSGLYLSSSSSRSRSRSPLPPLNNINNGNQQSNNFINNKNNNNNFN---NINNNY 130
Query: 60 NADRSSTKKKGNDGYYYECVICDLGGNLLCCDSCPRTYHLQCLDPPLKRIPNGKWQCPKC 119
N + N+ + N+ P L+ + ++ P
Sbjct: 131 NNNNGINSSNSNNSSNSSNKSKNSNNNI------PNILPYISLNGSGSSSSSKQFSLPPL 184
Query: 120 TQKNDQLKPISNLDSISKRARSKIITIKSQSGVKSSGADKVSQIFGN---SILARKRSNK 176
K+ SN S S SK S S SS + + IFGN S+
Sbjct: 185 --KSTTTSSSSNSTSSSSSRSSKS---HSSSSSSSSSSYPIKSIFGNIGGGSSKGSSSSS 239
Query: 177 GKSVLALGVKSLEKSLDSSQVDVSCSTKPENTSAGVPVEGSSSCPNDDDEKQLNASPTDS 236
+S + G S D S D + + + SS D + + S D
Sbjct: 240 SRSSKSSGSSSSRSDRDKSDRDSRSDRESRSDRDRSDRDRSSRSDRDSRSSRDSRSDRDR 299
Query: 237 LADTKFHPAEEVLPHSQVTKSEQNDEVPVEKHEKSSTNGSSGIKFVLAIGASERDRKRKP 296
+ + + ++ N+ + +++N S+ I S+RD +
Sbjct: 300 TSSSSNNNNNNNNNNNNNNSGNNNNSNNNSNNNNNNSNNSNNINNNSNNSRSDRDSRSDR 359
Query: 297 EVKDEDSQKKLRVD 310
E + S ++ R D
Sbjct: 360 E-RSGRSDRESRGD 372
Score = 48 (22.0 bits), Expect = 5.0e-70, Sum P(5) = 5.0e-70
Identities = 34/143 (23%), Positives = 56/143 (39%)
Query: 120 TQKNDQLKPISNLDSISKRARSKIITIKSQSGVKSSGADKVSQIFGNSI--LARKRSNKG 177
+ N L PIS L S SK S ++ S S + SS S +SI L+ + +
Sbjct: 439 SSSNQGLPPIS-LSSSSKHKLSS--SLSSSSSLSSSTNQGASSAISSSISVLSSPKQSPS 495
Query: 178 KSVLALGVKSLEKSLDSSQVDVSCSTKPE--NTSAGVPV-----EGSSSCPND---DDEK 227
++ +L +Q+ S S + N + E N+ D +
Sbjct: 496 MKSMSSSNPALPTLAPLTQLSSSSSNQKNLPNLVLKKAISKKDREQLMELLNEHESDSDV 555
Query: 228 QLNASPTDSLADTKFHPAEEVLP 250
+ +PT S +K+ PA+ LP
Sbjct: 556 DFSTTPTLSSHISKYSPAQSPLP 578
Score = 47 (21.6 bits), Expect = 5.0e-70, Sum P(5) = 5.0e-70
Identities = 14/51 (27%), Positives = 29/51 (56%)
Query: 257 SEQNDEVPVEKHEKSSTNGSSGIKFVLAI--GASERDRKRKPEVKDEDSQK 305
+EQN ++ EK+++ SS + + G +E+++K + E+K E +K
Sbjct: 1035 TEQNKKIK-EKNDQDDNESSSEEEEESSDDEGKTEQEKKEEEELKSEALKK 1084
Score = 43 (20.2 bits), Expect = 7.4e-71, Sum P(5) = 7.4e-71
Identities = 20/92 (21%), Positives = 42/92 (45%)
Query: 413 KGDDTSSSCHISATATDDRHSDDFLVSENHNKILEENLACDTDLDAEVTENLAELSPNVI 472
K DD SS AT + + +E + KI E+N D D + +E E S +
Sbjct: 1010 KLDDPSSGDATPATIGSLMNGSQ-MPTEQNKKIKEKN---DQDDNESSSEEEEESSDDEG 1065
Query: 473 RSSDEECMKNDIGVDRIQVYRRSVTKECKVTK 504
++ E+ + ++ + ++ ++++ + TK
Sbjct: 1066 KTEQEKKEEEELKSEALKKTQKAIELQLLKTK 1097
Score = 43 (20.2 bits), Expect = 1.7e-68, Sum P(6) = 1.7e-68
Identities = 15/65 (23%), Positives = 26/65 (40%)
Query: 216 GSSSCPNDDDEKQLNASPTDSLADTKFHPAEEVLPHSQVTKSEQNDEVP---VEKHEKSS 272
GSSS ++S + D K+ +K E ++E ++ +K S
Sbjct: 760 GSSSSSKSSKYNSSSSSSSSRSKDNKYIRPSIFSSDDDFSKDEDDEEFERLWKDRKKKKS 819
Query: 273 TNGSS 277
+NG S
Sbjct: 820 SNGPS 824
Score = 41 (19.5 bits), Expect = 7.4e-71, Sum P(5) = 7.4e-71
Identities = 9/18 (50%), Positives = 14/18 (77%)
Query: 289 ERDRKRKPEVKDEDSQKK 306
ER+ KR+ E K+E +Q+K
Sbjct: 962 EREAKRRAE-KEEANQRK 978
Score = 41 (19.5 bits), Expect = 6.2e-69, Sum P(5) = 6.2e-69
Identities = 10/20 (50%), Positives = 12/20 (60%)
Query: 14 RNWVLKRKRRKLPCGPGLSN 33
R W RK++K GP LSN
Sbjct: 809 RLWK-DRKKKKSSNGPSLSN 827
Score = 40 (19.1 bits), Expect = 5.0e-70, Sum P(5) = 5.0e-70
Identities = 13/46 (28%), Positives = 19/46 (41%)
Query: 4 NSSSTSTMINRNWVLKRKRRKLPCGPGLSNGKEENLVTSE-SPRNT 48
+SSS+S+ +N N P S+ + TS P NT
Sbjct: 378 SSSSSSSSLNNNNNNNNNNNNNPLSSSSSSSNRQPSTTSPIMPSNT 423
Score = 37 (18.1 bits), Expect = 2.2e-69, Sum P(5) = 2.2e-69
Identities = 7/15 (46%), Positives = 10/15 (66%)
Query: 509 ENAIDLLREDDKDSD 523
E ++LL E + DSD
Sbjct: 540 EQLMELLNEHESDSD 554
>UNIPROTKB|F1MFS2 [details] [associations]
symbol:CHD1L "Chromodomain-helicase-DNA-binding protein
1-like" species:9913 "Bos taurus" [GO:0006974 "response to DNA
damage stimulus" evidence=IEA] [GO:0006338 "chromatin remodeling"
evidence=IEA] [GO:0005886 "plasma membrane" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR002464 Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690
PROSITE:PS51194 SMART:SM00490 GO:GO:0005886 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0003677 GO:GO:0006974
GO:GO:0006338 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR002589 PROSITE:PS51154 GO:GO:0008026 IPI:IPI00710168
OMA:TCQTIAL GeneTree:ENSGT00670000098110 EMBL:DAAA02007335
Ensembl:ENSBTAT00000027762 Uniprot:F1MFS2
Length = 896
Score = 722 (259.2 bits), Expect = 2.6e-70, P = 2.6e-70
Identities = 165/392 (42%), Positives = 239/392 (60%)
Query: 867 KFNVLLTTYEMILADSSHLRGVPWEVLVVDEGHRXXXXXXXXXXXXXXXXXQHRVLLTGT 926
+F+VLLTTYE+ L D+S L+ PW VLVVDE HR +LLTGT
Sbjct: 147 RFHVLLTTYEICLKDASFLKSFPWSVLVVDEAHRLKNQSSLLHKTLSEFSVVFSLLLTGT 206
Query: 927 PLQNNIGEMYNLLNFLQPASFPS--LSSFEEKFNDLTT-TQKVEELKKLVAPHMLRRLKK 983
P+QN++ E+Y+LL+F++P F + F +++ D+ ++ EL KL+ P +LRR+K
Sbjct: 207 PIQNSLQELYSLLSFVEPDLFSKEQVEDFVQRYQDIEKESESASELYKLLQPFLLRRVKA 266
Query: 984 DAMQNIPPKTERMVPVELSSIQAEYYRAMLTKNYQILRN-IGKGVAQQSMLNIVMQLRKV 1042
+ +P KTE ++ +S++Q +YY+A+L K+ N + K V Q N++ QLRK
Sbjct: 267 EVATELPRKTEVVIYHGMSALQKKYYKAILMKDLDAFENEMAKKVKLQ---NVLSQLRKC 323
Query: 1043 CNHPYLIPGTEPDSGSVEFLHEMRIKASAKLTLLHSMLKVLYKEGHRVLIFSQMTKLLDI 1102
+HPYL G EP+ + + I+AS KL LL +L LY +GHRVL+FSQMT++LDI
Sbjct: 324 VDHPYLFDGVEPEPFEIG---DHLIEASGKLHLLDKLLAFLYSKGHRVLLFSQMTQMLDI 380
Query: 1103 LEDYLNIEFGPKTYERVDGSVSVGDRQAAITRFNQDKSRFVFLLSTRSCGLGINLATADT 1162
L+DYL ++ +YERVDGSV +R AI F Q F FL STR+ G+G+NL ADT
Sbjct: 381 LQDYL--DYRGYSYERVDGSVRGEERHLAIKNFGQQPI-FTFL-STRAGGVGMNLTAADT 436
Query: 1163 VIIYDSDFNPHADIQAMNRAHRIGQSKRLLVYRLVVRASVEERILQLAKKKLMLDQLFVN 1222
VI +DSDFNP D+QA RAHRIGQ+K + V RL+ R +VEE + + A KL L +
Sbjct: 437 VIFFDSDFNPQNDLQAAARAHRIGQNKSVKVIRLIGRDTVEEIVYRKAASKLQLTNTIIE 496
Query: 1223 KS----GSQK-------EVEDILRWGTEELFN 1243
G+QK ++ +IL++G ++L +
Sbjct: 497 GGHFTLGAQKPAADADLQLSEILKFGLDKLLS 528
Score = 683 (245.5 bits), Expect = 4.0e-66, P = 4.0e-66
Identities = 157/391 (40%), Positives = 226/391 (57%)
Query: 751 LKGGALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLV 810
L G L P+QL+ +NWL +C+H IL DEMGLGKT A L + P L+
Sbjct: 43 LTGIHLRPYQLQGVNWLAQCFHCQNGCILGDEMGLGKTCQTIALFIYLAGRLNDEGPFLI 102
Query: 811 LVPLSTMPNWLAEFALWAPNLNVVEYHGCAKARAIIRQYEWHASDPDNLNKKTSSYKFNV 870
L PLS + NW E +AP L+ V Y G RA ++Q +L +++ +F+V
Sbjct: 103 LCPLSVLSNWKEEMERFAPGLSCVTYAGDKDKRACLQQ---------DLKQES---RFHV 150
Query: 871 LLTTYEMILADSSHLRGVPWEVLVVDEGHRXXXXXXXXXXXXXXXXXQHRVLLTGTPLQN 930
LLTTYE+ L D+S L+ PW VLVVDE HR +LLTGTP+QN
Sbjct: 151 LLTTYEICLKDASFLKSFPWSVLVVDEAHRLKNQSSLLHKTLSEFSVVFSLLLTGTPIQN 210
Query: 931 NIGEMYNLLNFLQPASFPS--LSSFEEKFNDLTT-TQKVEELKKLVAPHMLRRLKKDAMQ 987
++ E+Y+LL+F++P F + F +++ D+ ++ EL KL+ P +LRR+K +
Sbjct: 211 SLQELYSLLSFVEPDLFSKEQVEDFVQRYQDIEKESESASELYKLLQPFLLRRVKAEVAT 270
Query: 988 NIPPKTERMVPVELSSIQAEYYRAMLTKNYQILRN-IGKGVAQQSMLNIVMQLRKVCNHP 1046
+P KTE ++ +S++Q +YY+A+L K+ N + K V Q N++ QLRK +HP
Sbjct: 271 ELPRKTEVVIYHGMSALQKKYYKAILMKDLDAFENEMAKKVKLQ---NVLSQLRKCVDHP 327
Query: 1047 YLIPGTEPDSGSVEFLHEMRIKASAKLTLLHSMLKVLYKEGHRVLIFSQMTKLLDILEDY 1106
YL G EP+ + + I+AS KL LL +L LY +GHRVL+FSQMT++LDIL+DY
Sbjct: 328 YLFDGVEPEPFEIG---DHLIEASGKLHLLDKLLAFLYSKGHRVLLFSQMTQMLDILQDY 384
Query: 1107 LNIEFGPKTYERVDGSVSVGDRQAAITRFNQ 1137
L ++ +YERVDGSV +R AI F Q
Sbjct: 385 L--DYRGYSYERVDGSVRGEERHLAIKNFGQ 413
>UNIPROTKB|E1BAN8 [details] [associations]
symbol:INO80 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:2000045 "regulation of G1/S transition of mitotic cell
cycle" evidence=IEA] [GO:0071479 "cellular response to ionizing
radiation" evidence=IEA] [GO:0070914 "UV-damage excision repair"
evidence=IEA] [GO:0051225 "spindle assembly" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0043014 "alpha-tubulin
binding" evidence=IEA] [GO:0034644 "cellular response to UV"
evidence=IEA] [GO:0031011 "Ino80 complex" evidence=IEA] [GO:0030307
"positive regulation of cell growth" evidence=IEA] [GO:0016887
"ATPase activity" evidence=IEA] [GO:0010571 "positive regulation of
DNA replication involved in S phase" evidence=IEA] [GO:0006338
"chromatin remodeling" evidence=IEA] [GO:0003678 "DNA helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0000724 "double-strand break repair via homologous
recombination" evidence=IEA] [GO:0000070 "mitotic sister chromatid
segregation" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF13892 PROSITE:PS51194
PROSITE:PS51413 SMART:SM00490 GO:GO:0005524 GO:GO:0030307
GO:GO:0051225 GO:GO:0003677 GO:GO:0045944 GO:GO:0016887
GO:GO:0006338 GO:GO:0000070 GO:GO:0031011 GO:GO:0000724
GO:GO:0034644 GO:GO:0071479 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0003678 GO:GO:0070914 GO:GO:2000045
GO:GO:0010571 KO:K11665 CTD:54617 GeneTree:ENSGT00680000100052
OMA:KVIRKFW EMBL:DAAA02028556 EMBL:DAAA02028557 IPI:IPI00685860
RefSeq:NP_001192313.1 UniGene:Bt.55708 Ensembl:ENSBTAT00000013708
GeneID:505992 KEGG:bta:505992 NextBio:20867400 Uniprot:E1BAN8
Length = 1566
Score = 428 (155.7 bits), Expect = 3.6e-70, Sum P(3) = 3.6e-70
Identities = 108/324 (33%), Positives = 168/324 (51%)
Query: 747 QPEELKGGALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKAKL 806
QP + G L +QL+ +NWL + + N ILADEMGLGKTV + A ++ L
Sbjct: 519 QPT-IFNGKLKGYQLKGMNWLANLYEQGINGILADEMGLGKTVQSIALLAHLAERENIWG 577
Query: 807 PCLVLVPLSTMPNWLAEFALWAPNLNVVEYHGCAKARAIIRQYEWHASDPDNLNKKTSSY 866
P L++ P ST+ NW EF + P V+ Y G R +IR++ W T
Sbjct: 578 PFLIISPASTLNNWHQEFTRFVPKFKVLPYWGNPHDRKVIRRF-WSQK-----TLYTQDA 631
Query: 867 KFNVLLTTYEMILADSSHLRGVPWEVLVVDEGHRXXXXXXXXXXXXXXXXXQHRVLLTGT 926
F+V++T+Y++++ D + + V W+ +V+DE ++R+LLTGT
Sbjct: 632 PFHVVITSYQLVVQDVKYFQRVKWQYMVLDEAQALKSSSSVRWKILLQFQCRNRLLLTGT 691
Query: 927 PLQNNIGEMYNLLNFLQPASFPSLSSFEEKFN-DLTTTQK----VEE-----LKKLVAPH 976
P+QN + E++ LL+F+ P F S F E F+ D+ + + ++E L ++ P
Sbjct: 692 PIQNTMAELWALLHFIMPTLFDSHEEFNEWFSKDIESHAENKSAIDENQLSRLHMILKPF 751
Query: 977 MLRRLKKDAMQNIPPKTERMVPVELSSIQAEYYRAMLTK-NYQILRNIGKGVAQQ----- 1030
MLRR+KKD + K E ++ +L+S Q Y+A+ K + + L G QQ
Sbjct: 752 MLRRIKKDVENELSDKIEILMYCQLTSRQKLLYQALKNKISIEDLLQSSMGSTQQAQTTT 811
Query: 1031 -SMLNIVMQLRKVCNHPYLIPGTE 1053
S++N+VMQ RKVCNHP L E
Sbjct: 812 SSLMNLVMQFRKVCNHPELFERQE 835
Score = 394 (143.8 bits), Expect = 3.6e-70, Sum P(3) = 3.6e-70
Identities = 88/212 (41%), Positives = 130/212 (61%)
Query: 1064 EMRIKASAKLTLLHSMLKVLYKEGHRVLIFSQMTKLLDILEDYLNIEFGPKTYERVDGSV 1123
E I S KL L +L L +GHRVLI+SQMT+++D+LE+Y+ + TY R+DGS
Sbjct: 1104 ESLITDSGKLYALDVLLTRLKSQGHRVLIYSQMTRMIDLLEEYM--VYRKHTYMRLDGSS 1161
Query: 1124 SVGDRQAAITRFNQDKSRFVFLLSTRSCGLGINLATADTVIIYDSDFNPHADIQAMNRAH 1183
+ +R+ + F FVFLLSTR+ GLGINL ADTVI YDSD+NP D QAM+RAH
Sbjct: 1162 KISERRDMVADFQTRNDIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTVDQQAMDRAH 1221
Query: 1184 RIGQSKRLLVYRLVVRASVEERILQLAKKKLMLDQLFVNKSGSQKEVEDILRWGTEELFN 1243
R+GQ+K++ VYRL+ + ++EERILQ AK+K + ++ + SG + + + L
Sbjct: 1222 RLGQTKQVTVYRLICKGTIEERILQRAKEKSEIQRMVI--SGGNFKPDTLKPKEVVSLLL 1279
Query: 1244 DSPGINGK-DMGENNTSIEEAVRDLEQKHRKR 1274
D + K + + +E ++++ RKR
Sbjct: 1280 DDEELEKKLRLRQEEKRQQEETNRVKERKRKR 1311
Score = 43 (20.2 bits), Expect = 3.6e-70, Sum P(3) = 3.6e-70
Identities = 35/134 (26%), Positives = 62/134 (46%)
Query: 128 PISNLDSISKRARSKIITIKSQSGVKSSGA--DKVSQIFGNSILARKRSNKGKSVLALGV 185
P S L S + S+++ S +GV S + DK ++ S L K+S K +
Sbjct: 77 PNSLLGETSGASTSEMLNTYSLNGVLQSESKFDK-GNLYNFSKL--KKSRKW-------L 126
Query: 186 KSLEKSLDSSQVDVSCSTKPENTSAGVPVEGSSSCPNDDDEKQLNASPTDSLADTKFHPA 245
KS+ S +SS+ D S +N EG +DD+E++L+ S D + H
Sbjct: 127 KSILLSDESSEAD---SHSEDND------EGEEE--DDDEEEELSLSREDLHNMLRLHKY 175
Query: 246 EEVLPHSQVTKSEQ 259
++ L ++ +K ++
Sbjct: 176 KK-LHQNKYSKEKE 188
Score = 38 (18.4 bits), Expect = 2.4e-29, Sum P(3) = 2.4e-29
Identities = 9/14 (64%), Positives = 11/14 (78%)
Query: 939 LNFLQPASFPSLSS 952
+NF P SFP+LSS
Sbjct: 963 VNF--PLSFPNLSS 974
>TAIR|locus:2062840 [details] [associations]
symbol:SYD "SPLAYED" species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM;IDA] [GO:0009908 "flower development"
evidence=IMP] [GO:0016887 "ATPase activity" evidence=ISS]
[GO:0003682 "chromatin binding" evidence=IPI] [GO:0010199 "organ
boundary specification between lateral organs and the meristem"
evidence=IGI] [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=NAS] [GO:0040029 "regulation of gene expression,
epigenetic" evidence=RCA;IMP] [GO:0009611 "response to wounding"
evidence=IEP] [GO:0005829 "cytosol" evidence=IDA] [GO:0000226
"microtubule cytoskeleton organization" evidence=RCA] [GO:0000911
"cytokinesis by cell plate formation" evidence=RCA] [GO:0006306
"DNA methylation" evidence=RCA] [GO:0006342 "chromatin silencing"
evidence=RCA] [GO:0007267 "cell-cell signaling" evidence=RCA]
[GO:0009616 "virus induced gene silencing" evidence=RCA]
[GO:0009640 "photomorphogenesis" evidence=RCA] [GO:0009793 "embryo
development ending in seed dormancy" evidence=RCA] [GO:0009845
"seed germination" evidence=RCA] [GO:0009909 "regulation of flower
development" evidence=RCA] [GO:0009933 "meristem structural
organization" evidence=RCA] [GO:0010162 "seed dormancy process"
evidence=RCA] [GO:0010182 "sugar mediated signaling pathway"
evidence=RCA] [GO:0010228 "vegetative to reproductive phase
transition of meristem" evidence=RCA] [GO:0010267 "production of
ta-siRNAs involved in RNA interference" evidence=RCA] [GO:0016567
"protein ubiquitination" evidence=RCA] [GO:0019915 "lipid storage"
evidence=RCA] [GO:0035196 "production of miRNAs involved in gene
silencing by miRNA" evidence=RCA] [GO:0050826 "response to
freezing" evidence=RCA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 SMART:SM00951 GO:GO:0005829 GO:GO:0005524
GO:GO:0005634 EMBL:CP002685 GO:GO:0009611 GO:GO:0006355
GO:GO:0003677 GO:GO:0003682 GO:GO:0016887 GO:GO:0004386
GO:GO:0009908 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0043044 GO:GO:0010199 GO:GO:0040029 InterPro:IPR014012
PROSITE:PS51204 IPI:IPI00516285 RefSeq:NP_850116.1 UniGene:At.22414
PRIDE:F4IHS2 EnsemblPlants:AT2G28290.1 GeneID:817375
KEGG:ath:AT2G28290 OMA:SDLYAIS Uniprot:F4IHS2
Length = 3574
Score = 772 (276.8 bits), Expect = 3.9e-70, Sum P(3) = 3.9e-70
Identities = 209/566 (36%), Positives = 301/566 (53%)
Query: 744 LTEQPEELKGGALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFK 803
+ EQP L GG L +Q+ L WL ++ N ILADEMGLGKTV + I L
Sbjct: 742 INEQPSSLVGGKLREYQMNGLRWLVSLYNNHLNGILADEMGLGKTVQVISLICYLMETKN 801
Query: 804 AKLPCLVLVPLSTMPNWLAEFALWAPNLNVVEYHGCA-KARAIIRQYEWHASDPDNLNKK 862
+ P LV+VP S +P W +E WAP+++ + Y G + R + ++ H
Sbjct: 802 DRGPFLVVVPSSVLPGWQSEINFWAPSIHKIVYCGTPDERRKLFKEQIVHQ--------- 852
Query: 863 TSSYKFNVLLTTYEMILA--DSSHLRGVPWEVLVVDEGHRXXXXXXXXXXXXXXXXXQHR 920
KFNVLLTTYE ++ D L + W +++DEGHR HR
Sbjct: 853 ----KFNVLLTTYEYLMNKHDRPKLSKIHWHYIIIDEGHRIKNASCKLNADLKHYVSSHR 908
Query: 921 VLLTGTPLQNNIGEMYNLLNFLQPASFPSLSSFEEKFND-------------LTTTQK-- 965
+LLTGTPLQNN+ E++ LLNFL P F S F + FN L + ++
Sbjct: 909 LLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFQSNGESSAEEALLSEEENL 968
Query: 966 --VEELKKLVAPHMLRRLKKDAMQNIPPKTERMVPVELSSIQAEYYRAMLTKNYQI-LRN 1022
+ L +++ P +LRRLK +P K ER++ E S+ Y+ +L K + L +
Sbjct: 969 LIINRLHQVLRPFVLRRLKHKVENELPEKIERLIRCEASA-----YQKLLMKRVEDNLGS 1023
Query: 1023 IGKGVAQQSMLNIVMQLRKVCNHPYLIPGTEPDSGSV---EFLHEMRIKASAKLTLLHSM 1079
IG ++ ++ N VM+LR +CNHPYL + ++ FL + ++ KL +L M
Sbjct: 1024 IGNAKSR-AVHNSVMELRNICNHPYLSQLHSEEVNNIIPKHFLPPI-VRLCGKLEMLDRM 1081
Query: 1080 LKVLYKEGHRVLIFSQMTKLLDILEDYLNIEFGPKTYERVDGSVSVGDRQAAITRFNQDK 1139
L L HRVL FS MT+LLD++EDYL ++ G K Y R+DG S GDR A I FN+
Sbjct: 1082 LPKLKATDHRVLFFSTMTRLLDVMEDYLTLK-GYK-YLRLDGQTSGGDRGALIDGFNKSG 1139
Query: 1140 SRF-VFLLSTRSCGLGINLATADTVIIYDSDFNPHADIQAMNRAHRIGQSKRLLVYRLVV 1198
S F +FLLS R+ G+G+NL ADTVI++D+D+NP D+QA RAHRIGQ K +LV R
Sbjct: 1140 SPFFIFLLSIRAGGVGVNLQAADTVILFDTDWNPQVDLQAQARAHRIGQKKDVLVLRFET 1199
Query: 1199 RASVEERILQLAKKKL-MLDQ-----LFVNKSGSQ--KE-VEDILRWGTEELFNDSPGIN 1249
SVEE++ A+ KL + +Q F N + ++ KE +E +LR +E D+P ++
Sbjct: 1200 VNSVEEQVRASAEHKLGVANQSITAGFFDNNTSAEDRKEYLESLLRESKKE--EDAPVLD 1257
Query: 1250 GKDMGENNTSIEEAVRDLEQ--KHRK 1273
+ + E + E K RK
Sbjct: 1258 DDALNDLIARRESEIDIFESIDKQRK 1283
Score = 53 (23.7 bits), Expect = 3.9e-70, Sum P(3) = 3.9e-70
Identities = 26/111 (23%), Positives = 52/111 (46%)
Query: 1258 TSIEEAVRDLEQKHRKRGGG-LGDVYQDKCTEGSTKIVWDENAIARLLDRSNLQSGSTDL 1316
+++++ + D +Q H + G L DV + TE ++ + + +L + +++
Sbjct: 2957 SAVQKNIEDKDQSHVETAGSELVDVSAECSTEPQVQLPPSSEPVGDM--HVHLGASKSEI 3014
Query: 1317 -AEGDLENDMLGSVKATEWNEETTEDQ-AESPVAAVDDASAENSERKEENA 1365
AEG D S+ TE EE + Q A++ ++ A +N E + E A
Sbjct: 3015 VAEG---TDFSSSLPKTE--EENAKSQLADTEPSSSLTAVQKNIEDQVETA 3060
Score = 41 (19.5 bits), Expect = 3.2e-69, Sum P(4) = 3.2e-69
Identities = 9/40 (22%), Positives = 20/40 (50%)
Query: 11 MINRNWVLKRKRRKLPCGPGLSNGKEENLVTSESPRNTPS 50
+++R+W LK+++ G + KE ++ + T S
Sbjct: 479 LVDRSWSLKQQKADQAIGSRFNELKESVSLSDDISAKTKS 518
Score = 40 (19.1 bits), Expect = 3.9e-70, Sum P(3) = 3.9e-70
Identities = 10/45 (22%), Positives = 19/45 (42%)
Query: 31 LSNGKEENLVTSESPRNTPSAKRRLKNEINADRSSTKKKGNDGYY 75
L + EN N + ++NE +D++ + N+ YY
Sbjct: 688 LLTSRFENEADETRTSNATDDETLIENEDESDQAKHYLESNEKYY 732
Score = 40 (19.1 bits), Expect = 3.2e-69, Sum P(4) = 3.2e-69
Identities = 18/89 (20%), Positives = 35/89 (39%)
Query: 456 LDAEVTENLAELSPNVIRSSDEEC---MKNDIGVDRIQVYRRSVTKECKVTKECKGENAI 512
L E + + N+++ +D E M D DR++ + K + K + A
Sbjct: 629 LHREKIDKIQREKINLLKINDVEGYLRMVQDAKSDRVKQLLKETEKYLQKLGS-KLKEAK 687
Query: 513 DLLREDDKDSDPVAVNGKVQDESAVSTED 541
L + ++D + DE+ + ED
Sbjct: 688 LLTSRFENEADETRTSNATDDETLIENED 716
>POMBASE|SPAC29B12.01 [details] [associations]
symbol:ino80 "SNF2 family helicase Ino80" species:4896
"Schizosaccharomyces pombe" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006281 "DNA repair"
evidence=ISO] [GO:0006338 "chromatin remodeling" evidence=IPI]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0031011 "Ino80 complex" evidence=IDA] [GO:0043140
"ATP-dependent 3'-5' DNA helicase activity" evidence=ISO]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF13892 PROSITE:PS51194
PROSITE:PS51413 SMART:SM00490 PomBase:SPAC29B12.01 GO:GO:0005524
EMBL:CU329670 GO:GO:0006355 GenomeReviews:CU329670_GR GO:GO:0003677
GO:GO:0006281 GO:GO:0006351 GO:GO:0016568 GO:GO:0031011 HSSP:Q97XQ5
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0043140 KO:K11665 HOGENOM:HOG000048482 OrthoDB:EOG41G6C8
RefSeq:NP_001018299.1 ProteinModelPortal:O14148 STRING:O14148
EnsemblFungi:SPAC29B12.01.1 GeneID:3361566 KEGG:spo:SPAC29B12.01
OMA:INDHNSA NextBio:20811604 Uniprot:O14148
Length = 1604
Score = 449 (163.1 bits), Expect = 4.2e-70, Sum P(3) = 4.2e-70
Identities = 121/367 (32%), Positives = 194/367 (52%)
Query: 699 EPALEKYSHLTDLFVQFERQTLKKDASEDELPRGKGDCQQSEIVALTE--QPEELKGGAL 756
+ A++K + LF RQ ++S D + G+ + Q +V E QP+ L L
Sbjct: 786 QEAVQKAREHSQLF-DANRQQSPNNSSSD-MNEGEMNFQNPTLVNAFEVKQPKMLMC-KL 842
Query: 757 FPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLST 816
+QL+ LNWL + + N ILADEMGLGKTV + + ++ L P LV+ P ST
Sbjct: 843 KEYQLKGLNWLANLYEQGINGILADEMGLGKTVQSISVMAYLAETHNIWGPFLVIAPAST 902
Query: 817 MPNWLAEFALWAPNLNVVEYHGCAKARAIIRQYEWHASDPDNLNKKTSSYKFNVLLTTYE 876
+ NW E + P L + Y G K R I+R++ W N+ +S F+V++T+Y+
Sbjct: 903 LHNWQQEITRFVPKLKCIPYWGSTKDRKILRKF-WCRK---NMTYDENS-PFHVVVTSYQ 957
Query: 877 MILADSSHLRGVPWEVLVVDEGHRXXXXXXXXXXXXXXXXXQHRVLLTGTPLQNNIGEMY 936
+++ D+ + + V W+ +++DE ++R+LLTGTP+QN + E++
Sbjct: 958 LVVLDAQYFQSVKWQYMILDEAQAIKSSSSSRWKSLLAFKCRNRLLLTGTPIQNTMQELW 1017
Query: 937 NLLNFLQPASFPSLSSFEEKFN-DL-----TTTQKVEE-LKKL---VAPHMLRRLKKDAM 986
LL+F+ P+ F S + F E F+ D+ + TQ E+ LK+L + P MLRR+KK+
Sbjct: 1018 ALLHFIMPSLFDSHNEFSEWFSKDIESHAQSNTQLNEQQLKRLHMILKPFMLRRVKKNVQ 1077
Query: 987 QNIPPKTERMVPVELSSIQAEYYRAMLTKNYQILRNIGKGV-----AQQSMLNIVMQLRK 1041
+ K E+ V +L+ Q Y+A L + I + K + S++N+VMQ RK
Sbjct: 1078 SELGEKIEKEVYCDLTQRQKILYQA-LRRQISIAELLEKAILGGDDTVASIMNLVMQFRK 1136
Query: 1042 VCNHPYL 1048
VCNHP L
Sbjct: 1137 VCNHPDL 1143
Score = 404 (147.3 bits), Expect = 2.9e-64, Sum P(3) = 2.9e-64
Identities = 160/652 (24%), Positives = 278/652 (42%)
Query: 411 RVKGDDTSSSCHISATATDDRHSDDFLVSENHNKILEENLACDTDLDAEVTENLAELSPN 470
R K S +S+ D +D N + +A D + E A S
Sbjct: 481 RSKAKSDKSRAKLSSDTNKDSEKND----NNDASLQSAGVASDGESSPETPLTKASKSKK 536
Query: 471 VIRSS-DEECMKNDIGVDRIQVYRRSVTKECKVTKECKGENAI--DLLREDDKDS-DPVA 526
S + KN G + ++S K K +E A + L D ++ +
Sbjct: 537 AKASKLANDTSKNANGETK-STPKKSKKKTSKAQQEANSTTAEGKEKLSGDSTETGNSTN 595
Query: 527 VNGKVQDESAVSTEDLGERNDKMVVEDADVSLRDNEGLTVSEIHITCESTDKDVDVG-KK 585
+D A +T + K V +++ + ++ + + +K
Sbjct: 596 KEASTEDTKANATASAPNKKKKTVETLQQQVIKEIARKEIPRVYKIIQQNQYNRSTNARK 655
Query: 586 TS---GSVAKRVQEPAV--TESAQVKGKAVSYEFLVKWVGKSNIHNSWIPESQLKVL--A 638
TS G A+R Q + + Q K K E +V W + +++ + L A
Sbjct: 656 TSQLCGREARRWQFRTIKNNKDMQTKAKRAMRETMVFWKRNERVERDLRKKAEREALDRA 715
Query: 639 KRKLENYKAKYGTTVINICDERWKQPQRVISLRSSKD-----GTREAFVKWTGLPYDE-- 691
K++ E +++ ++ + + + + ++ T A V DE
Sbjct: 716 KKEEELRESRRQARKLDFLITQTELYSHFVGRKMDREQDLPSATNTASVSEINFDSDEEE 775
Query: 692 ----CTWEKLDEPALEKYSHLTDLFVQFERQTLKKDASEDELPRGKGDCQQSEIVALTE- 746
E E A++K + LF RQ ++S D + G+ + Q +V E
Sbjct: 776 DIRRLAVESAQE-AVQKAREHSQLF-DANRQQSPNNSSSD-MNEGEMNFQNPTLVNAFEV 832
Query: 747 -QPEELKGGALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKAK 805
QP+ L L +QL+ LNWL + + N ILADEMGLGKTV + + ++ L
Sbjct: 833 KQPKMLMC-KLKEYQLKGLNWLANLYEQGINGILADEMGLGKTVQSISVMAYLAETHNIW 891
Query: 806 LPCLVLVPLSTMPNWLAEFALWAPNLNVVEYHGCAKARAIIRQYEWHASDPDNLNKKTSS 865
P LV+ P ST+ NW E + P L + Y G K R I+R++ W N+ +S
Sbjct: 892 GPFLVIAPASTLHNWQQEITRFVPKLKCIPYWGSTKDRKILRKF-WCRK---NMTYDENS 947
Query: 866 YKFNVLLTTYEMILADSSHLRGVPWEVLVVDEGHRXXXXXXXXXXXXXXXXXQHRVLLTG 925
F+V++T+Y++++ D+ + + V W+ +++DE ++R+LLTG
Sbjct: 948 -PFHVVVTSYQLVVLDAQYFQSVKWQYMILDEAQAIKSSSSSRWKSLLAFKCRNRLLLTG 1006
Query: 926 TPLQNNIGEMYNLLNFLQPASFPSLSSFEEKFN-DL-----TTTQKVEE-LKKL---VAP 975
TP+QN + E++ LL+F+ P+ F S + F E F+ D+ + TQ E+ LK+L + P
Sbjct: 1007 TPIQNTMQELWALLHFIMPSLFDSHNEFSEWFSKDIESHAQSNTQLNEQQLKRLHMILKP 1066
Query: 976 HMLRRLKKDAMQNIPPKTERMVPVELSSIQAEYYRAMLTKNYQILRNIGKGV 1027
MLRR+KK+ + K E+ V +L+ Q Y+A L + I + K +
Sbjct: 1067 FMLRRVKKNVQSELGEKIEKEVYCDLTQRQKILYQA-LRRQISIAELLEKAI 1117
Score = 363 (132.8 bits), Expect = 4.2e-70, Sum P(3) = 4.2e-70
Identities = 92/246 (37%), Positives = 138/246 (56%)
Query: 1000 ELSSIQAEYYRAMLTKNYQILRNIGKGVAQQSMLNIVMQLRKVCNHPYLIPGTEPDSGS- 1058
+ + +Q+ + R L +Y L KG + N + + P L+P GS
Sbjct: 1357 QFTVLQSRFQRDHLWSHY--LYQPLKGEEDLIINNQAVSKLPIPRKP-LLPSFGIAKGSY 1413
Query: 1059 --VEFLHEMRIKA-SAKLTLLHSMLKVLYKEGHRVLIFSQMTKLLDILEDYLNIEFGPKT 1115
V +R A S KL+ L +L L HRVLI+ QMT+++D++E+YL F
Sbjct: 1414 SNVRIPSMLRFIADSGKLSKLDKLLVELKANDHRVLIYFQMTRMIDLMEEYLT--FRQYK 1471
Query: 1116 YERVDGSVSVGDRQAAITRFNQDKSRFVFLLSTRSCGLGINLATADTVIIYDSDFNPHAD 1175
Y R+DGS + R+ +T + FVFLLSTR+ GLGINL ADTVI YDSD+NP D
Sbjct: 1472 YLRLDGSSKISQRRDMVTEWQTRPELFVFLLSTRAGGLGINLTAADTVIFYDSDWNPSID 1531
Query: 1176 IQAMNRAHRIGQSKRLLVYRLVVRASVEERILQLAKKKLMLDQLFVNKSGSQKEVEDILR 1235
QAM+RAHRIGQ K++ VYR + R ++EERI+ AK+K + ++ ++ ++ + L+
Sbjct: 1532 SQAMDRAHRIGQQKQVTVYRFITRGTIEERIVIRAKEKEEVQKVVISGGETRPTKQMDLK 1591
Query: 1236 WGTEEL 1241
+ E+
Sbjct: 1592 GNSREM 1597
Score = 52 (23.4 bits), Expect = 4.2e-70, Sum P(3) = 4.2e-70
Identities = 33/130 (25%), Positives = 51/130 (39%)
Query: 50 SAKRRLKNEINADRSSTKKKGNDGYYYECVICDLGGNLLCCDSCPRTYHLQCLDPPLKRI 109
S K R K + ++ S K ND + G +S P T P K
Sbjct: 486 SDKSRAKLSSDTNKDSEKNDNNDASLQSAGVASDG------ESSPET-------PLTKAS 532
Query: 110 PNGKWQCPKCTQKNDQLKPISNLDSISKRARSKIITIKSQSGVKSSGADKVSQIFGNSIL 169
+ K + K ND K +N ++ S +SK T K+Q S+ A+ ++ G+S
Sbjct: 533 KSKKAKASKLA--NDTSKN-ANGETKSTPKKSKKKTSKAQQEANSTTAEGKEKLSGDSTE 589
Query: 170 ARKRSNKGKS 179
+NK S
Sbjct: 590 TGNSTNKEAS 599
Score = 44 (20.5 bits), Expect = 2.9e-69, Sum P(3) = 2.9e-69
Identities = 22/95 (23%), Positives = 39/95 (41%)
Query: 128 PISNLDSISKRARSKIITIKSQSGVKSSGADKVSQIFGNSILARKRSNKGKSVLALGVKS 187
P + L SK ++K + + + ++G K S + K + S A G +
Sbjct: 524 PETPLTKASKSKKAKASKLANDTSKNANGETK-STPKKSKKKTSKAQQEANSTTAEGKEK 582
Query: 188 LEKSLDSSQVDVSCSTKPENTSAGVPVEGSSSCPN 222
L S DS++ ST E ++ ++S PN
Sbjct: 583 L--SGDSTET--GNSTNKEASTEDTKANATASAPN 613
Score = 43 (20.2 bits), Expect = 3.7e-69, Sum P(3) = 3.7e-69
Identities = 17/69 (24%), Positives = 29/69 (42%)
Query: 3 DNSSSTSTMINRNWVLKRKRRKLPCGPGLSN--GKEENLVTSESPRNTPSAKRRLKNEIN 60
D SS T + + K K+ K L+N K N T +P+ + + + E N
Sbjct: 519 DGESSPETPLTK--ASKSKKAK---ASKLANDTSKNANGETKSTPKKSKKKTSKAQQEAN 573
Query: 61 ADRSSTKKK 69
+ + K+K
Sbjct: 574 STTAEGKEK 582
Score = 43 (20.2 bits), Expect = 3.7e-69, Sum P(3) = 3.7e-69
Identities = 15/110 (13%), Positives = 38/110 (34%)
Query: 289 ERDRKRKPEVKDEDSQKKLRVDXXXXXXXXXXXXXXXIGTLSPGTSKLHEKQRTNNDEVS 348
+++R+ + + E + K ++ + + K Q T N+
Sbjct: 410 KKEREEQVRLLQESADKDAEMNEASTATSENEDLKDDLSLADLSSKKTANSQATENNNTP 469
Query: 349 ASL---CEVDVGTKGLDAQRKDELAEETTDPLDKSDKAGVHVNEIPLCKD 395
+ E V +K + + +L+ +T +K+D + + D
Sbjct: 470 SKAKVKAESKVRSKAKSDKSRAKLSSDTNKDSEKNDNNDASLQSAGVASD 519
Score = 43 (20.2 bits), Expect = 2.3e-27, Sum P(2) = 2.3e-27
Identities = 8/32 (25%), Positives = 19/32 (59%)
Query: 967 EELKKLVAPHMLRRLKKDAMQNIPPKTERMVP 998
E + ++AP + RL + ++ +PP +++ P
Sbjct: 243 ENISPVMAPSIDARLSQTILRGLPP-AQKLSP 273
Score = 37 (18.1 bits), Expect = 9.8e-27, Sum P(2) = 9.8e-27
Identities = 8/18 (44%), Positives = 11/18 (61%)
Query: 854 SDPDNLNKKTSSYKFNVL 871
SD D+ ++T KFN L
Sbjct: 316 SDDDSNEQQTMMMKFNYL 333
>UNIPROTKB|F1NYY9 [details] [associations]
symbol:INO80 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0006338
"chromatin remodeling" evidence=IEA] [GO:0010571 "positive
regulation of DNA replication involved in S phase" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=IEA] [GO:0030307 "positive
regulation of cell growth" evidence=IEA] [GO:0031011 "Ino80
complex" evidence=IEA] [GO:0034644 "cellular response to UV"
evidence=IEA] [GO:0043014 "alpha-tubulin binding" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0051225 "spindle
assembly" evidence=IEA] [GO:0070914 "UV-damage excision repair"
evidence=IEA] [GO:0071479 "cellular response to ionizing radiation"
evidence=IEA] [GO:2000045 "regulation of G1/S transition of mitotic
cell cycle" evidence=IEA] [GO:0000070 "mitotic sister chromatid
segregation" evidence=IEA] [GO:0000724 "double-strand break repair
via homologous recombination" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003678 "DNA helicase activity"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF13892
PROSITE:PS51194 PROSITE:PS51413 SMART:SM00490 GO:GO:0005524
GO:GO:0030307 GO:GO:0051225 GO:GO:0003677 GO:GO:0045944
GO:GO:0016887 GO:GO:0006338 GO:GO:0000070 GO:GO:0031011
GO:GO:0000724 GO:GO:0034644 GO:GO:0071479 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0003678 GO:GO:0070914
GO:GO:2000045 GO:GO:0010571 GeneTree:ENSGT00680000100052
OMA:KVIRKFW EMBL:AADN02033529 EMBL:AADN02033530 IPI:IPI00604387
Ensembl:ENSGALT00000013933 Uniprot:F1NYY9
Length = 1564
Score = 426 (155.0 bits), Expect = 4.4e-70, Sum P(4) = 4.4e-70
Identities = 108/324 (33%), Positives = 167/324 (51%)
Query: 747 QPEELKGGALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKAKL 806
QP + G L +QL+ +NWL + + N ILADEMGLGKTV + A ++ L
Sbjct: 515 QPT-IFNGKLKGYQLKGMNWLANLYEQGINGILADEMGLGKTVQSIALLAHLAERENIWG 573
Query: 807 PCLVLVPLSTMPNWLAEFALWAPNLNVVEYHGCAKARAIIRQYEWHASDPDNLNKKTSSY 866
P L++ P ST+ NW EFA + P V+ Y G R +IR++ W T
Sbjct: 574 PFLIISPASTLNNWHQEFARFVPKFKVLPYWGNPHDRKVIRKF-WSQK-----TLYTQDA 627
Query: 867 KFNVLLTTYEMILADSSHLRGVPWEVLVVDEGHRXXXXXXXXXXXXXXXXXQHRVLLTGT 926
F+V++T+Y++++ D + + V W+ +V+DE ++R+LLTGT
Sbjct: 628 PFHVVITSYQLVVQDVKYFQRVKWQYMVLDEAQALKSSSSVRWKILLQFQCRNRLLLTGT 687
Query: 927 PLQNNIGEMYNLLNFLQPASFPSLSSFEEKFN-DLTTTQK----VEE-----LKKLVAPH 976
P+QN + E++ LL+F+ P F S F E F+ D+ + + ++E L ++ P
Sbjct: 688 PIQNTMAELWALLHFIMPTLFDSHEEFNEWFSKDIESHAENKSAIDENQLSRLHMILKPF 747
Query: 977 MLRRLKKDAMQNIPPKTERMVPVELSSIQAEYYRAMLTK-NYQILRNIGKGVAQQ----- 1030
MLRR+KKD + K E ++ + +S Q Y+A+ K + L G QQ
Sbjct: 748 MLRRIKKDVENELSDKIEILMYCQQTSRQKLLYQALKNKISIDDLLQSSMGTTQQAQTTT 807
Query: 1031 -SMLNIVMQLRKVCNHPYLIPGTE 1053
S++N+VMQ RKVCNHP L E
Sbjct: 808 SSLMNLVMQFRKVCNHPELFERQE 831
Score = 397 (144.8 bits), Expect = 4.4e-70, Sum P(4) = 4.4e-70
Identities = 98/236 (41%), Positives = 138/236 (58%)
Query: 1045 HPYLIPGTEPDSGSVEFLH----EMRIKASAKLTLLHSMLKVLYKEGHRVLIFSQMTKLL 1100
+P + G P +G F+ E I S KL L +L L +GHRVLI+SQMT+++
Sbjct: 1080 YPGGLLGIRPQNGW-SFIRIPDKESLITDSGKLHALDLLLTRLKSQGHRVLIYSQMTRMI 1138
Query: 1101 DILEDYLNIEFGPKTYERVDGSVSVGDRQAAITRFNQDKSRFVFLLSTRSCGLGINLATA 1160
D+LE+Y+ + TY R+DGS + +R+ + F FVFLLSTR+ GLGINL A
Sbjct: 1139 DLLEEYM--VYRKHTYMRLDGSSKISERRDMVADFQNRNDIFVFLLSTRAGGLGINLTAA 1196
Query: 1161 DTVIIYDSDFNPHADIQAMNRAHRIGQSKRLLVYRLVVRASVEERILQLAKKKLMLDQLF 1220
DTVI YDSD+NP D QAM+RAHR+GQ+K++ VYRL+ + ++EERILQ AK+K + ++
Sbjct: 1197 DTVIFYDSDWNPTVDQQAMDRAHRLGQTKQVTVYRLICKGTIEERILQRAKEKSEIQRMV 1256
Query: 1221 VNKSGSQKEVEDILRWGTEELFNDSPGINGK--DMGENNTSIEEAVRDLEQKHRKR 1274
+ SG + + + L D + K E EE R E+K RKR
Sbjct: 1257 I--SGGNFKPDTLKPKEVVSLLLDDEELEKKLRQRQEEKRQQEETNRVKERK-RKR 1309
Score = 51 (23.0 bits), Expect = 4.4e-70, Sum P(4) = 4.4e-70
Identities = 15/43 (34%), Positives = 26/43 (60%)
Query: 501 KVTKECKGENAIDLLREDDKDSD-PVAVNGKVQDESAVSTEDL 542
K+ K K +I LL +D D+D P +G+ ++E ++S E+L
Sbjct: 121 KLKKSRKWLKSI-LLSDDSSDTDSPSDEDGEDEEEFSLSREEL 162
Score = 40 (19.1 bits), Expect = 4.4e-70, Sum P(4) = 4.4e-70
Identities = 18/89 (20%), Positives = 37/89 (41%)
Query: 633 QLKVLAKRKLENYKAKYGTTVINICDERWKQPQRVISLRSSKDGTREAFV-KWTGLPYDE 691
Q K ++L+ Y+ Y +++ D ++Q + ++ + K + K +
Sbjct: 176 QSKYSKDKELQQYQY-YSAGLLSTYDPYYEQQRHLLGPKKKKFKEEKKLKGKLKKVKKKR 234
Query: 692 CTWEKLD-EPALEKYSHLTDLFVQFERQT 719
E L E + E + H T +F +F T
Sbjct: 235 RRDEDLSSEESPEHHHHQTKVFAKFSHDT 263
>UNIPROTKB|Q9ULG1 [details] [associations]
symbol:INO80 "DNA helicase INO80" species:9606 "Homo
sapiens" [GO:0003779 "actin binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005874 "microtubule" evidence=IEA]
[GO:0051301 "cell division" evidence=IEA] [GO:0003678 "DNA helicase
activity" evidence=IDA] [GO:0003677 "DNA binding" evidence=IDA]
[GO:0016887 "ATPase activity" evidence=IDA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0006338 "chromatin remodeling" evidence=IDA]
[GO:0031011 "Ino80 complex" evidence=IDA] [GO:0034644 "cellular
response to UV" evidence=IMP] [GO:0000724 "double-strand break
repair via homologous recombination" evidence=IMP] [GO:0070914
"UV-damage excision repair" evidence=IMP] [GO:0071479 "cellular
response to ionizing radiation" evidence=IMP] [GO:0006302
"double-strand break repair" evidence=IMP] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IMP] [GO:0030307 "positive regulation of cell growth"
evidence=IMP] [GO:2000045 "regulation of G1/S transition of mitotic
cell cycle" evidence=IMP] [GO:0010571 "positive regulation of DNA
replication involved in S phase" evidence=IMP] [GO:0043014
"alpha-tubulin binding" evidence=IMP] [GO:0051225 "spindle
assembly" evidence=IMP] [GO:0000070 "mitotic sister chromatid
segregation" evidence=IMP] [GO:0005515 "protein binding"
evidence=IPI] [GO:0006200 "ATP catabolic process" evidence=IDA]
[GO:0032508 "DNA duplex unwinding" evidence=IDA] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF13892 PROSITE:PS51194 PROSITE:PS51413 SMART:SM00490
GO:GO:0005524 GO:GO:0030307 GO:GO:0051301 GO:GO:0051225
GO:GO:0003677 GO:GO:0045944 GO:GO:0016887 GO:GO:0006338
GO:GO:0000070 GO:GO:0031011 GO:GO:0000724 GO:GO:0034644
GO:GO:0005874 GO:GO:0071479 HSSP:Q97XQ5 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043014
GO:GO:0003678 GO:GO:0070914 GO:GO:2000045 EMBL:CH471125
GO:GO:0010571 KO:K11665 CTD:54617 ChiTaRS:INO80 EMBL:AB033085
EMBL:BC146785 EMBL:AL137280 IPI:IPI00008091 PIR:T46350
RefSeq:NP_060023.1 UniGene:Hs.292949 ProteinModelPortal:Q9ULG1
SMR:Q9ULG1 DIP:DIP-34296N IntAct:Q9ULG1 STRING:Q9ULG1
PhosphoSite:Q9ULG1 DMDM:114149322 PaxDb:Q9ULG1 PRIDE:Q9ULG1
Ensembl:ENST00000361937 Ensembl:ENST00000401393 GeneID:54617
KEGG:hsa:54617 UCSC:uc001zni.3 GeneCards:GC15M041271
HGNC:HGNC:26956 MIM:610169 neXtProt:NX_Q9ULG1 PharmGKB:PA162392040
HOGENOM:HOG000231795 HOVERGEN:HBG057875 InParanoid:Q9ULG1
OMA:KVIRKFW OrthoDB:EOG4ZKJKF GenomeRNAi:54617 NextBio:57137
ArrayExpress:Q9ULG1 Bgee:Q9ULG1 CleanEx:HS_INO80
Genevestigator:Q9ULG1 GermOnline:ENSG00000128908 Uniprot:Q9ULG1
Length = 1556
Score = 428 (155.7 bits), Expect = 5.7e-70, Sum P(3) = 5.7e-70
Identities = 108/324 (33%), Positives = 168/324 (51%)
Query: 747 QPEELKGGALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKAKL 806
QP + G L +QL+ +NWL + + N ILADEMGLGKTV + A ++ L
Sbjct: 510 QPT-IFNGKLKGYQLKGMNWLANLYEQGINGILADEMGLGKTVQSIALLAHLAERENIWG 568
Query: 807 PCLVLVPLSTMPNWLAEFALWAPNLNVVEYHGCAKARAIIRQYEWHASDPDNLNKKTSSY 866
P L++ P ST+ NW EF + P V+ Y G R +IR++ W T
Sbjct: 569 PFLIISPASTLNNWHQEFTRFVPKFKVLPYWGNPHDRKVIRRF-WSQK-----TLYTQDA 622
Query: 867 KFNVLLTTYEMILADSSHLRGVPWEVLVVDEGHRXXXXXXXXXXXXXXXXXQHRVLLTGT 926
F+V++T+Y++++ D + + V W+ +V+DE ++R+LLTGT
Sbjct: 623 PFHVVITSYQLVVQDVKYFQRVKWQYMVLDEAQALKSSSSVRWKILLQFQCRNRLLLTGT 682
Query: 927 PLQNNIGEMYNLLNFLQPASFPSLSSFEEKFN-DLTTTQK----VEE-----LKKLVAPH 976
P+QN + E++ LL+F+ P F S F E F+ D+ + + ++E L ++ P
Sbjct: 683 PIQNTMAELWALLHFIMPTLFDSHEEFNEWFSKDIESHAENKSAIDENQLSRLHMILKPF 742
Query: 977 MLRRLKKDAMQNIPPKTERMVPVELSSIQAEYYRAMLTK-NYQILRNIGKGVAQQ----- 1030
MLRR+KKD + K E ++ +L+S Q Y+A+ K + + L G QQ
Sbjct: 743 MLRRIKKDVENELSDKIEILMYCQLTSRQKLLYQALKNKISIEDLLQSSMGSTQQAQNTT 802
Query: 1031 -SMLNIVMQLRKVCNHPYLIPGTE 1053
S++N+VMQ RKVCNHP L E
Sbjct: 803 SSLMNLVMQFRKVCNHPELFERQE 826
Score = 395 (144.1 bits), Expect = 5.7e-70, Sum P(3) = 5.7e-70
Identities = 88/212 (41%), Positives = 130/212 (61%)
Query: 1064 EMRIKASAKLTLLHSMLKVLYKEGHRVLIFSQMTKLLDILEDYLNIEFGPKTYERVDGSV 1123
E I S KL L +L L +GHRVLI+SQMT+++D+LE+Y+ + TY R+DGS
Sbjct: 1094 ESLITDSGKLYALDVLLTRLKSQGHRVLIYSQMTRMIDLLEEYM--VYRKHTYMRLDGSS 1151
Query: 1124 SVGDRQAAITRFNQDKSRFVFLLSTRSCGLGINLATADTVIIYDSDFNPHADIQAMNRAH 1183
+ +R+ + F FVFLLSTR+ GLGINL ADTVI YDSD+NP D QAM+RAH
Sbjct: 1152 KISERRDMVADFQNRNDIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTVDQQAMDRAH 1211
Query: 1184 RIGQSKRLLVYRLVVRASVEERILQLAKKKLMLDQLFVNKSGSQKEVEDILRWGTEELFN 1243
R+GQ+K++ VYRL+ + ++EERILQ AK+K + ++ + SG + + + L
Sbjct: 1212 RLGQTKQVTVYRLICKGTIEERILQRAKEKSEIQRMVI--SGGNFKPDTLKPKEVVSLLL 1269
Query: 1244 DSPGINGK-DMGENNTSIEEAVRDLEQKHRKR 1274
D + K + + +E ++++ RKR
Sbjct: 1270 DDEELEKKLRLRQEEKRQQEETNRVKERKRKR 1301
Score = 40 (19.1 bits), Expect = 5.7e-70, Sum P(3) = 5.7e-70
Identities = 8/16 (50%), Positives = 11/16 (68%)
Query: 217 SSSCPNDDDEKQLNAS 232
+ S DDDE++LN S
Sbjct: 138 ADSQSEDDDEEELNLS 153
Score = 38 (18.4 bits), Expect = 3.7e-29, Sum P(3) = 3.7e-29
Identities = 14/60 (23%), Positives = 27/60 (45%)
Query: 830 NLNVVEYHGCAKARAIIRQYEWHASDPDNLNKKTSSYKFNV--LLTTYEMILADSSHLRG 887
NL+ E H + + +Y+ + + +K+ Y++ LL+TY+ HL G
Sbjct: 151 NLSREELHNMLR----LHKYKKLHQNKYSKDKELQQYQYYSAGLLSTYDPFYEQQRHLLG 206
Score = 38 (18.4 bits), Expect = 3.7e-29, Sum P(3) = 3.7e-29
Identities = 17/62 (27%), Positives = 27/62 (43%)
Query: 665 QRVISLRSSKDGTREAFVKWTGLPYDECTWE-KLDEPALEKYSHLTDLFVQFERQTLKKD 723
Q V RS+ R + T LP C ++ L+ Y + D ++ER+ LK+
Sbjct: 986 QVVHQRRSATSSLRRCLL--TELPSFLCVASPRVTAVPLDSYCN--DRSAEYERRVLKEG 1041
Query: 724 AS 725
S
Sbjct: 1042 GS 1043
>MGI|MGI:1915392 [details] [associations]
symbol:Ino80 "INO80 homolog (S. cerevisiae)" species:10090
"Mus musculus" [GO:0000070 "mitotic sister chromatid segregation"
evidence=ISO] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000724 "double-strand break repair via homologous
recombination" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=ISO] [GO:0003678
"DNA helicase activity" evidence=ISO] [GO:0003779 "actin binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005874 "microtubule" evidence=IEA] [GO:0006200
"ATP catabolic process" evidence=ISO] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0006302 "double-strand break repair"
evidence=ISO] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0006338 "chromatin remodeling" evidence=ISO] [GO:0006974
"response to DNA damage stimulus" evidence=IEA] [GO:0007049 "cell
cycle" evidence=IEA] [GO:0007067 "mitosis" evidence=IEA]
[GO:0010571 "positive regulation of DNA replication involved in S
phase" evidence=ISO] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0016817 "hydrolase activity, acting on acid anhydrides"
evidence=IEA] [GO:0016887 "ATPase activity" evidence=ISO]
[GO:0030307 "positive regulation of cell growth" evidence=ISO]
[GO:0031011 "Ino80 complex" evidence=ISO] [GO:0032508 "DNA duplex
unwinding" evidence=ISO] [GO:0034644 "cellular response to UV"
evidence=ISO] [GO:0043014 "alpha-tubulin binding" evidence=ISO]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=ISO] [GO:0051225 "spindle
assembly" evidence=ISO] [GO:0051301 "cell division" evidence=IEA]
[GO:0070914 "UV-damage excision repair" evidence=ISO] [GO:0071479
"cellular response to ionizing radiation" evidence=ISO] [GO:2000045
"regulation of G1/S transition of mitotic cell cycle" evidence=ISO]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF13892 PROSITE:PS51194
PROSITE:PS51413 SMART:SM00490 MGI:MGI:1915392 GO:GO:0005524
GO:GO:0005634 GO:GO:0030307 GO:GO:0051301 GO:GO:0051225
GO:GO:0003677 GO:GO:0045944 GO:GO:0016887 GO:GO:0006338
GO:GO:0000070 GO:GO:0031011 GO:GO:0000724 GO:GO:0034644
GO:GO:0005874 GO:GO:0071479 HSSP:Q97XQ5 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0003678
GO:GO:0070914 GO:GO:2000045 GO:GO:0010571 EMBL:AL844862 KO:K11665
CTD:54617 GeneTree:ENSGT00680000100052 HOGENOM:HOG000231795
HOVERGEN:HBG057875 OMA:KVIRKFW OrthoDB:EOG4ZKJKF EMBL:AK040612
EMBL:AK129317 EMBL:BC059235 IPI:IPI00378561 IPI:IPI00785415
RefSeq:NP_080850.2 UniGene:Mm.330496 ProteinModelPortal:Q6ZPV2
SMR:Q6ZPV2 IntAct:Q6ZPV2 STRING:Q6ZPV2 PhosphoSite:Q6ZPV2
PaxDb:Q6ZPV2 PRIDE:Q6ZPV2 Ensembl:ENSMUST00000049920
Ensembl:ENSMUST00000110808 GeneID:68142 KEGG:mmu:68142
InParanoid:Q6ZPV2 NextBio:326516 Bgee:Q6ZPV2 Genevestigator:Q6ZPV2
GermOnline:ENSMUSG00000034154 Uniprot:Q6ZPV2
Length = 1559
Score = 427 (155.4 bits), Expect = 9.4e-70, Sum P(3) = 9.4e-70
Identities = 108/324 (33%), Positives = 167/324 (51%)
Query: 747 QPEELKGGALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKAKL 806
QP + G L +QL+ +NWL + + N ILADEMGLGKTV + A ++ L
Sbjct: 512 QPT-IFNGKLKGYQLKGMNWLANLYEQGINGILADEMGLGKTVQSIALLAHLAERENIWG 570
Query: 807 PCLVLVPLSTMPNWLAEFALWAPNLNVVEYHGCAKARAIIRQYEWHASDPDNLNKKTSSY 866
P L++ P ST+ NW EF + P V+ Y G R +IR++ W T
Sbjct: 571 PFLIISPASTLNNWHQEFTRFVPKFKVLPYWGNPHDRKVIRRF-WSQK-----TLYTQDA 624
Query: 867 KFNVLLTTYEMILADSSHLRGVPWEVLVVDEGHRXXXXXXXXXXXXXXXXXQHRVLLTGT 926
F+V++T+Y++++ D + + V W+ +V+DE ++R+LLTGT
Sbjct: 625 PFHVVITSYQLVVQDVKYFQRVKWQYMVLDEAQALKSSSSVRWKILLQFQCRNRLLLTGT 684
Query: 927 PLQNNIGEMYNLLNFLQPASFPSLSSFEEKFN-DLTTTQK----VEE-----LKKLVAPH 976
P+QN + E++ LL+F+ P F S F E F+ D+ + + ++E L ++ P
Sbjct: 685 PIQNTMAELWALLHFIMPTLFDSHEEFNEWFSKDIESHAENKSAIDENQLSRLHMILKPF 744
Query: 977 MLRRLKKDAMQNIPPKTERMVPVELSSIQAEYYRAMLTK-NYQILRNIGKGVAQQ----- 1030
MLRR+KKD + K E + +L+S Q Y+A+ K + + L G QQ
Sbjct: 745 MLRRIKKDVENELSDKIEILTYCQLTSRQKLLYQALKNKISIEDLLQSSMGSTQQAQNTT 804
Query: 1031 -SMLNIVMQLRKVCNHPYLIPGTE 1053
S++N+VMQ RKVCNHP L E
Sbjct: 805 SSLMNLVMQFRKVCNHPELFERQE 828
Score = 392 (143.0 bits), Expect = 9.4e-70, Sum P(3) = 9.4e-70
Identities = 93/213 (43%), Positives = 130/213 (61%)
Query: 1064 EMRIKASAKLTLLHSMLKVLYKEGHRVLIFSQMTKLLDILEDYLNIEFGPKTYERVDGSV 1123
E I S KL L +L L +GHRVLI+SQMT+++D+LE+Y+ + TY R+DGS
Sbjct: 1097 ESLITDSGKLYALDVLLTRLKSQGHRVLIYSQMTRMIDLLEEYM--VYRKHTYMRLDGSS 1154
Query: 1124 SVGDRQAAITRFNQDKSRFVFLLSTRSCGLGINLATADTVIIYDSDFNPHADIQAMNRAH 1183
+ +R+ + F FVFLLSTR+ GLGINL ADTVI YDSD+NP D QAM+RAH
Sbjct: 1155 KISERRDMVADFQTRNDIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTVDQQAMDRAH 1214
Query: 1184 RIGQSKRLLVYRLVVRASVEERILQLAKKKLMLDQLFVNKSGSQKEVEDILRWGTEELFN 1243
R+GQ+K++ VYRL+ + ++EERILQ AK+K + ++ + SG + + + L
Sbjct: 1215 RLGQTKQVTVYRLICKGTIEERILQRAKEKSEIQRMVI--SGGNFKPDTLKPKEVVSLLL 1272
Query: 1244 DSPGINGKDM--GENNTSIEEAVRDLEQKHRKR 1274
D + K E EE+ R E+K RKR
Sbjct: 1273 DDEELEKKLRLRQEEKRQQEESNRVKERK-RKR 1304
Score = 46 (21.3 bits), Expect = 7.2e-30, Sum P(3) = 7.2e-30
Identities = 12/49 (24%), Positives = 22/49 (44%)
Query: 929 QNNIGEMYNL-LNFLQPASFPSLSSFEEKFNDLTTTQKVEELKKLVAPH 976
QN + NL + F + + P L +E ++ + K E+ K + H
Sbjct: 801 QNTTSSLMNLVMQFRKVCNHPELFERQETWSPFHISLKPYEISKFIYRH 849
Score = 42 (19.8 bits), Expect = 9.4e-70, Sum P(3) = 9.4e-70
Identities = 29/111 (26%), Positives = 45/111 (40%)
Query: 123 NDQLKPISNLDSISKRARSKIITIKSQSGVKSSGADKVSQIFGNSIL-ARKRSNKGKSVL 181
N+ L P S I + + SG SSG + N +L + +S+KG
Sbjct: 58 NNPLLPESGDPLIQVKEEPPNSLLGETSGASSSGLLNPYSL--NGVLQSESKSDKGNLYN 115
Query: 182 ALGVKSLEKSLDSSQVDVSCSTKPENTSAGVPVEGSSSCPNDDDEKQLNAS 232
+K K L S + E++ A S S NDD+E++L+ S
Sbjct: 116 FSKLKKSRKWLKSILLS------DESSEAD-----SQSEDNDDEEEELSLS 155
>POMBASE|SPAC11E3.01c [details] [associations]
symbol:swr1 "SNF2 family helicase Swr1" species:4896
"Schizosaccharomyces pombe" [GO:0000812 "Swr1 complex"
evidence=IDA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0004003
"ATP-dependent DNA helicase activity" evidence=ISM] [GO:0005524
"ATP binding" evidence=ISM] [GO:0005634 "nucleus" evidence=IDA]
[GO:0006338 "chromatin remodeling" evidence=IPI] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0043486 "histone exchange" evidence=ISO] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690
PROSITE:PS51194 SMART:SM00490 PomBase:SPAC11E3.01c GO:GO:0005524
EMBL:CU329670 GO:GO:0006355 GenomeReviews:CU329670_GR GO:GO:0003677
GO:GO:0006351 GO:GO:0000812 GO:GO:0004003 GO:GO:0043486
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR014012 PROSITE:PS51204 KO:K11681 HOGENOM:HOG000186095
OrthoDB:EOG49S9FK PIR:T37528 RefSeq:XP_001713118.1
ProteinModelPortal:O13682 STRING:O13682 EnsemblFungi:SPAC11E3.01c.1
GeneID:3361561 KEGG:spo:SPAC11E3.01c OMA:VKNEREG NextBio:20811602
Uniprot:O13682
Length = 1288
Score = 402 (146.6 bits), Expect = 9.7e-70, Sum P(3) = 9.7e-70
Identities = 106/315 (33%), Positives = 158/315 (50%)
Query: 754 GALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVP 813
G L +Q L WL + N ILADEMGLGKT+ A ++ L CE + P L++VP
Sbjct: 445 GTLREYQQYGLEWLTALHDSNTNGILADEMGLGKTIQTIALLAHLACEKENWGPHLIIVP 504
Query: 814 LSTMPNWLAEFALWAPNLNVVEYHGCAKARAIIRQYEWHASDPDNLNKKTSSYKFNVLLT 873
S M NW EF + P ++ Y+G + R R W+ PD ++V +T
Sbjct: 505 TSVMLNWEMEFKKFLPGFKILTYYGNPQERKEKRS-GWYK--PDT---------WHVCIT 552
Query: 874 TYEMILADSSHLRGVPWEVLVVDEGHRXXXXXXXXXXXXXXXXXQHRVLLTGTPLQNNIG 933
+Y+++L D R W+ +++DE H +HR+LLTGTPLQNN+
Sbjct: 553 SYQLVLQDHQPFRRKKWQYMILDEAHNIKNFRSQRWQSLLNFNAEHRLLLTGTPLQNNLV 612
Query: 934 EMYNLLNFLQPA-------SFPSLSSFEEKFN-----------DLT--TTQKVEELKKLV 973
E+++LL FL PA +F +L F++ F+ D+ V +L +++
Sbjct: 613 ELWSLLYFLMPAGVTQNNSAFANLKDFQDWFSKPMDRLIEEGQDMNPEAMNTVAKLHRVL 672
Query: 974 APHMLRRLKKDAMQNIPPKTERMVPVELSSIQAEYYRAMLTKNYQILRNIGKGVAQQSML 1033
P++LRRLK + + +P K E +V +LS Q Y + N R I S++
Sbjct: 673 RPYLLRRLKTEVEKQMPAKYEHVVYCQLSKRQRFLYDDFI--NRARTREILASGNFMSII 730
Query: 1034 NIVMQLRKVCNHPYL 1048
N +MQLRKVCNHP L
Sbjct: 731 NCLMQLRKVCNHPNL 745
Score = 381 (139.2 bits), Expect = 9.7e-70, Sum P(3) = 9.7e-70
Identities = 89/194 (45%), Positives = 120/194 (61%)
Query: 1072 KLTLLHSMLKVLYKEGHRVLIFSQMTKLLDILEDYLNIEFGPKTYERVDGSVSVGDRQAA 1131
KL +L +LK L GHRVLIF+QMTK+LDILE +LNI G + Y R+DG+ + RQ
Sbjct: 992 KLQVLDRLLKDLVSNGHRVLIFTQMTKVLDILEQFLNIH-GHR-YLRLDGATKIEQRQIL 1049
Query: 1132 ITRFNQDKSRFVFLLSTRSCGLGINLATADTVIIYDSDFNPHADIQAMNRAHRIGQSKRL 1191
RFN D VF+LSTRS GLGINL ADTVI YDSD+NP D QA +R+HRIGQ++ +
Sbjct: 1050 TERFNNDDKIPVFILSTRSGGLGINLTGADTVIFYDSDWNPQLDAQAQDRSHRIGQTRDV 1109
Query: 1192 LVYRLVVRASVEERILQLAKKKLMLDQLFVNKSGSQKEVEDILRWGTEELFN-DSPGING 1250
+YRL+ +VE +L+ A +K MLD++ + G + E + +LF+ D +
Sbjct: 1110 HIYRLISEYTVESNMLRRANQKRMLDKIVIQ--GGEFTTEWFRKADVLDLFDLDDESLKK 1167
Query: 1251 --KDMGENNTSIEE 1262
D +T EE
Sbjct: 1168 VKADSDSGSTKNEE 1181
Score = 75 (31.5 bits), Expect = 9.7e-70, Sum P(3) = 9.7e-70
Identities = 44/168 (26%), Positives = 76/168 (45%)
Query: 584 KKTSGSVAKRVQEPAVTESAQVKGKAVSYEFLVKW-VGKSNIHN---SWIPESQLKVLAK 639
K+ SG+ K+ +E + ++ K ++E KW V + + E+Q +V K
Sbjct: 155 KRLSGADEKKAKEE--DKRIRLLAKRTAWEIRKKWKVIEREVRRRRAERAAEAQ-RVAGK 211
Query: 640 RKLENYKAKYGTTVINICDERWKQPQRVISLRSSKDGTREAFVKWTGLPYDECTWEKLDE 699
+L N K+ T ++ ER I++ + T E+ V W L +DE
Sbjct: 212 EQLANI-LKHSTDLLEARIERAN-----INISAQ---TSESAVDWNYLLKTSDDLLSVDE 262
Query: 700 PALEKYSHLTDLFVQFERQTLKKDASEDELPRGKGDCQQSEIVALTEQ 747
L KYS+ DL ER+ ++ S+DE P D +++E +TE+
Sbjct: 263 LKL-KYSN-PDLIKNIEREEEAEETSDDE-PLSSED-EENEDEDITEE 306
Score = 47 (21.6 bits), Expect = 8.3e-67, Sum P(3) = 8.3e-67
Identities = 13/32 (40%), Positives = 16/32 (50%)
Query: 55 LKNEINADRSSTKKKGNDGYYYECVICDLGGN 86
+K E D STKK NDG E + D G +
Sbjct: 353 MKKEDITDGVSTKKDLNDGDQNEVPLHDTGSS 384
Score = 40 (19.1 bits), Expect = 4.5e-66, Sum P(3) = 4.5e-66
Identities = 9/20 (45%), Positives = 13/20 (65%)
Query: 4 NSSSTSTMINRNWVLKRKRR 23
+SSS S + N + K+KRR
Sbjct: 383 SSSSLSLLYNEDVASKKKRR 402
Score = 39 (18.8 bits), Expect = 5.7e-66, Sum P(3) = 5.7e-66
Identities = 9/39 (23%), Positives = 18/39 (46%)
Query: 515 LREDDKDSDPVAVNGKVQDESAVSTEDLGERNDKMVVED 553
L + D++ P+ G S + ED+ + + V +D
Sbjct: 368 LNDGDQNEVPLHDTGSSSSLSLLYNEDVASKKKRRVNDD 406
>UNIPROTKB|E1BC33 [details] [associations]
symbol:LOC788113 "Uncharacterized protein" species:9913
"Bos taurus" [GO:0043234 "protein complex" evidence=IEA]
[GO:0005794 "Golgi apparatus" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR017956 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00384 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0005794 GO:GO:0043234 GO:GO:0003677 InterPro:IPR020478
PRINTS:PR00929 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529
PROSITE:PS51204 GeneTree:ENSGT00530000063427 OMA:LGTGNPQ
EMBL:DAAA02057908 IPI:IPI00705506 Ensembl:ENSBTAT00000018503
Uniprot:E1BC33
Length = 3242
Score = 426 (155.0 bits), Expect = 1.0e-69, Sum P(3) = 1.0e-69
Identities = 111/314 (35%), Positives = 159/314 (50%)
Query: 754 GALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVP 813
G L +Q L+WL + K N ILADEMGLGKT+ + ++ L CE P L++VP
Sbjct: 624 GQLREYQHIGLDWLVTMYEKKLNGILADEMGLGKTIQTISLLAHLACEKGNWGPHLIIVP 683
Query: 814 LSTMPNWLAEFALWAPNLNVVEYHGCAKARAIIRQYEWHASDPDNLNKKTSSYKFNVLLT 873
S M NW E W P+ ++ Y+G K R + RQ W T F+V +T
Sbjct: 684 TSVMLNWEMELKRWCPSFKILTYYGAQKERKLKRQ-GW-----------TKPNAFHVCIT 731
Query: 874 TYEMILADSSHLRGVPWEVLVVDEGHRXXXXXXXXXXXXXXXXXQHRVLLTGTPLQNNIG 933
+Y+++L D R W L++DE Q R+LLTGTPLQN++
Sbjct: 732 SYKLVLQDHQAFRRKNWRYLILDEAQNIKNFKSQRWQSLLNFNSQRRLLLTGTPLQNSLM 791
Query: 934 EMYNLLNFLQPASFPSLSSFEEKF-NDLTT----TQK-----VEELKKLVAPHMLRRLKK 983
E+++L++FL P F S F+E F N LT +Q+ V+ L K++ P +LRR+K
Sbjct: 792 ELWSLMHFLMPHVFQSHREFKEWFSNPLTGMIEGSQEYNEGLVKRLHKVLRPFLLRRVKV 851
Query: 984 DAMQNIPPKTERMVPVELSSIQAEYYRAMLTKNYQILRNIGKGVAQQSMLNIVMQLRKVC 1043
D + +P K E ++ LS Q Y + + + G S++NI+MQLRKVC
Sbjct: 852 DVEKQMPKKYEHVIRCRLSKRQRCLYDDFMAQT-TTKETLATGHFM-SVINILMQLRKVC 909
Query: 1044 NHPYLI---PGTEP 1054
NHP L P T P
Sbjct: 910 NHPNLFDPRPVTSP 923
Score = 373 (136.4 bits), Expect = 1.0e-69, Sum P(3) = 1.0e-69
Identities = 77/150 (51%), Positives = 103/150 (68%)
Query: 1072 KLTLLHSMLKVLYKEGHRVLIFSQMTKLLDILEDYLNIEFGPKTYERVDGSVSVGDRQAA 1131
KL L +L+ L EGHRVLIF+QMT++LD+LE +L + Y R+DGS V RQA
Sbjct: 2055 KLQTLAVLLRQLKAEGHRVLIFTQMTRMLDVLEQFLT--YHGHLYLRLDGSTRVEQRQAL 2112
Query: 1132 ITRFNQDKSRFVFLLSTRSCGLGINLATADTVIIYDSDFNPHADIQAMNRAHRIGQSKRL 1191
+ RFN DK F F+LSTRS G+G+NL ADTV+ YDSD+NP D QA +R HRIGQ++ +
Sbjct: 2113 MERFNADKRIFCFILSTRSGGVGVNLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDV 2172
Query: 1192 LVYRLVVRASVEERILQLAKKKLMLDQLFV 1221
+YRL+ +VEE IL+ A +K ML + +
Sbjct: 2173 HIYRLISERTVEENILKKANQKRMLGDMAI 2202
Score = 74 (31.1 bits), Expect = 1.0e-69, Sum P(3) = 1.0e-69
Identities = 30/143 (20%), Positives = 52/143 (36%)
Query: 208 TSAGVPVEGSSSCPNDDDEKQLNASPTDSLADTKFHPAEEVLPHSQVTKSEQNDEVPVEK 267
+ A P GSS D+DE + N+S + T+ A + SQ +E+ E E+
Sbjct: 458 SDASAPGSGSSE-EEDEDEVEANSSDCEPEGATEAEEAPQEDSSSQSDSAEEQSEDEDEE 516
Query: 268 HEKSSTNGSSGIKFVLAIGASERDRKRKPEVKDEDSQKKLRVDXXXXXXXXXXXXXXXIG 327
H + S SE + + ++E+ V+ G
Sbjct: 517 HSEEEETSESSESEESESEESEESQSQSQADEEEEEDDDFGVEYLLARDEEQSEADGGSG 576
Query: 328 TLSPG-TSKLHEKQRTNNDEVSA 349
+PG T+ L K+ + +A
Sbjct: 577 PPTPGPTTTLGPKKEITDIAAAA 599
Score = 55 (24.4 bits), Expect = 9.9e-68, Sum P(3) = 9.9e-68
Identities = 33/130 (25%), Positives = 54/130 (41%)
Query: 168 ILARKRSNKGKSVLALGVKSLEKSLDSSQVDVSCST-KPENTSAG--VPVEGSSSCPN-- 222
+L R A G S E+ D +V+ + S +PE + P E SSS +
Sbjct: 448 LLQRYAGAYASDASAPGSGSSEEE-DEDEVEANSSDCEPEGATEAEEAPQEDSSSQSDSA 506
Query: 223 -----DDDEKQLNASPTDSLADTK---FHPAEEVLPHSQVTKSEQ-NDEVPVE-----KH 268
D+DE+ T ++++ +EE SQ + E+ +D+ VE
Sbjct: 507 EEQSEDEDEEHSEEEETSESSESEESESEESEESQSQSQADEEEEEDDDFGVEYLLARDE 566
Query: 269 EKSSTNGSSG 278
E+S +G SG
Sbjct: 567 EQSEADGGSG 576
Score = 49 (22.3 bits), Expect = 4.2e-67, Sum P(3) = 4.2e-67
Identities = 13/60 (21%), Positives = 28/60 (46%)
Query: 330 SPGTSKLHEKQRTNNDEVSASLCEVDVGTKGLDAQRKDELAEETTDPLDKSDKAGVHVNE 389
+PG+ E+ + E ++S CE + T+ +A ++D ++ + D+ H E
Sbjct: 462 APGSGSSEEEDE-DEVEANSSDCEPEGATEAEEAPQEDSSSQSDSAEEQSEDEDEEHSEE 520
Score = 47 (21.6 bits), Expect = 6.8e-67, Sum P(3) = 6.8e-67
Identities = 16/73 (21%), Positives = 31/73 (42%)
Query: 518 DDKDSDPVAVNGK-VQDESAVSTEDLGERNDKMVVEDADVSLRDNEGLTVSEIHITCEST 576
+++D D V N + E A E+ + + + A+ D E SE T ES+
Sbjct: 469 EEEDEDEVEANSSDCEPEGATEAEEAPQEDSSSQSDSAEEQSED-EDEEHSEEEETSESS 527
Query: 577 DKDVDVGKKTSGS 589
+ + +++ S
Sbjct: 528 ESEESESEESEES 540
Score = 45 (20.9 bits), Expect = 1.1e-66, Sum P(3) = 1.1e-66
Identities = 8/29 (27%), Positives = 13/29 (44%)
Query: 722 KDASEDELPRGKGDCQQSEIVALTEQPEE 750
++ EDE+ DC+ E P+E
Sbjct: 469 EEEDEDEVEANSSDCEPEGATEAEEAPQE 497
Score = 45 (20.9 bits), Expect = 1.1e-66, Sum P(3) = 1.1e-66
Identities = 27/161 (16%), Positives = 58/161 (36%)
Query: 221 PNDDDEK-QLNASPTDSLADTKFHPAEEVLP----HS-QVTKSEQNDEVPVEKHEKSSTN 274
P++DDE+ N + DT AEE L H+ ++++ + E+ +E+ +
Sbjct: 397 PDEDDEEFTANEDEAEDEEDTI--AAEEQLEGEVDHAMELSELAREGELSMEELLQRYAG 454
Query: 275 GSSGIKFVLAIGASERDRKRKPEVKDEDSQKKLRVDXXXXXXXXXXXXXXXIGTLSPGTS 334
+ G+SE + + + E D + + + S
Sbjct: 455 AYASDASAPGSGSSEEEDEDEVEANSSDCEPEGATEAEEAPQEDSSSQSDSAEEQSEDED 514
Query: 335 KLHEKQRTNNDEVSASLCEVDVGTKGLDAQRKDELAEETTD 375
+ H ++ ++ + E + + + DE EE D
Sbjct: 515 EEHSEEEETSESSESEESESEESEESQSQSQADEEEEEDDD 555
>UNIPROTKB|F1PKX5 [details] [associations]
symbol:INO80 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:2000045 "regulation of G1/S transition of
mitotic cell cycle" evidence=IEA] [GO:0071479 "cellular response to
ionizing radiation" evidence=IEA] [GO:0070914 "UV-damage excision
repair" evidence=IEA] [GO:0051225 "spindle assembly" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0043014 "alpha-tubulin
binding" evidence=IEA] [GO:0034644 "cellular response to UV"
evidence=IEA] [GO:0031011 "Ino80 complex" evidence=IEA] [GO:0030307
"positive regulation of cell growth" evidence=IEA] [GO:0016887
"ATPase activity" evidence=IEA] [GO:0010571 "positive regulation of
DNA replication involved in S phase" evidence=IEA] [GO:0006338
"chromatin remodeling" evidence=IEA] [GO:0003678 "DNA helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0000724 "double-strand break repair via homologous
recombination" evidence=IEA] [GO:0000070 "mitotic sister chromatid
segregation" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF13892 PROSITE:PS51194
PROSITE:PS51413 SMART:SM00490 GO:GO:0005524 GO:GO:0030307
GO:GO:0051225 GO:GO:0003677 GO:GO:0045944 GO:GO:0016887
GO:GO:0006338 GO:GO:0000070 GO:GO:0031011 GO:GO:0000724
GO:GO:0034644 GO:GO:0071479 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0003678 GO:GO:0070914 GO:GO:2000045
GO:GO:0010571 KO:K11665 CTD:54617 GeneTree:ENSGT00680000100052
OMA:KVIRKFW EMBL:AAEX03016071 RefSeq:XP_849183.1
Ensembl:ENSCAFT00000015097 GeneID:478262 KEGG:cfa:478262
Uniprot:F1PKX5
Length = 1560
Score = 428 (155.7 bits), Expect = 1.2e-69, Sum P(3) = 1.2e-69
Identities = 108/324 (33%), Positives = 168/324 (51%)
Query: 747 QPEELKGGALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKAKL 806
QP + G L +QL+ +NWL + + N ILADEMGLGKTV + A ++ L
Sbjct: 513 QPT-IFNGKLKGYQLKGMNWLANLYEQGINGILADEMGLGKTVQSIALLAHLAERENIWG 571
Query: 807 PCLVLVPLSTMPNWLAEFALWAPNLNVVEYHGCAKARAIIRQYEWHASDPDNLNKKTSSY 866
P L++ P ST+ NW EF + P V+ Y G R +IR++ W T
Sbjct: 572 PFLIISPASTLNNWHQEFTRFVPKFKVLPYWGNPHDRKVIRRF-WSQK-----TLYTQDA 625
Query: 867 KFNVLLTTYEMILADSSHLRGVPWEVLVVDEGHRXXXXXXXXXXXXXXXXXQHRVLLTGT 926
F+V++T+Y++++ D + + V W+ +V+DE ++R+LLTGT
Sbjct: 626 PFHVVITSYQLVVQDVKYFQRVKWQYMVLDEAQALKSSSSVRWKILLQFQCRNRLLLTGT 685
Query: 927 PLQNNIGEMYNLLNFLQPASFPSLSSFEEKFN-DLTTTQK----VEE-----LKKLVAPH 976
P+QN + E++ LL+F+ P F S F E F+ D+ + + ++E L ++ P
Sbjct: 686 PIQNTMAELWALLHFIMPTLFDSHEEFNEWFSKDIESHAENKSAIDENQLSRLHMILKPF 745
Query: 977 MLRRLKKDAMQNIPPKTERMVPVELSSIQAEYYRAMLTK-NYQILRNIGKGVAQQ----- 1030
MLRR+KKD + K E ++ +L+S Q Y+A+ K + + L G QQ
Sbjct: 746 MLRRIKKDVENELSDKIEILMYCQLTSRQKLLYQALKNKISIEDLLQSSMGSTQQAQTTT 805
Query: 1031 -SMLNIVMQLRKVCNHPYLIPGTE 1053
S++N+VMQ RKVCNHP L E
Sbjct: 806 SSLMNLVMQFRKVCNHPELFERQE 829
Score = 395 (144.1 bits), Expect = 1.2e-69, Sum P(3) = 1.2e-69
Identities = 88/212 (41%), Positives = 130/212 (61%)
Query: 1064 EMRIKASAKLTLLHSMLKVLYKEGHRVLIFSQMTKLLDILEDYLNIEFGPKTYERVDGSV 1123
E I S KL L +L L +GHRVLI+SQMT+++D+LE+Y+ + TY R+DGS
Sbjct: 1098 ESLITDSGKLYALDVLLTRLKSQGHRVLIYSQMTRMIDLLEEYM--VYRKHTYMRLDGSS 1155
Query: 1124 SVGDRQAAITRFNQDKSRFVFLLSTRSCGLGINLATADTVIIYDSDFNPHADIQAMNRAH 1183
+ +R+ + F FVFLLSTR+ GLGINL ADTVI YDSD+NP D QAM+RAH
Sbjct: 1156 KISERRDMVADFQNRNDIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTVDQQAMDRAH 1215
Query: 1184 RIGQSKRLLVYRLVVRASVEERILQLAKKKLMLDQLFVNKSGSQKEVEDILRWGTEELFN 1243
R+GQ+K++ VYRL+ + ++EERILQ AK+K + ++ + SG + + + L
Sbjct: 1216 RLGQTKQVTVYRLICKGTIEERILQRAKEKSEIQRMVI--SGGNFKPDTLKPKEVVSLLL 1273
Query: 1244 DSPGINGK-DMGENNTSIEEAVRDLEQKHRKR 1274
D + K + + +E ++++ RKR
Sbjct: 1274 DDEELEKKLRLRQEEKRQQEETNRVKERKRKR 1305
Score = 37 (18.1 bits), Expect = 1.2e-69, Sum P(3) = 1.2e-69
Identities = 8/22 (36%), Positives = 12/22 (54%)
Query: 553 DADVSLRDNEGLTVSEIHITCE 574
+AD DNE E+H++ E
Sbjct: 137 EADSQSEDNEEEEEEELHLSRE 158
>SGD|S000005816 [details] [associations]
symbol:SNF2 "Catalytic subunit of the SWI/SNF chromatin
remodeling complex" species:4932 "Saccharomyces cerevisiae"
[GO:0006261 "DNA-dependent DNA replication" evidence=IMP]
[GO:0016514 "SWI/SNF complex" evidence=IDA;IMP] [GO:0006338
"chromatin remodeling" evidence=IGI;IMP] [GO:0031496 "positive
regulation of mating type switching" evidence=IMP] [GO:0031492
"nucleosomal DNA binding" evidence=IDA] [GO:0042766 "nucleosome
mobilization" evidence=IMP;IDA] [GO:0006302 "double-strand break
repair" evidence=IMP] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA;IDA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IMP;IDA] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IGI;IMP] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0016818 "hydrolase activity, acting on acid
anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0043044 "ATP-dependent chromatin remodeling" evidence=IMP;IDA]
[GO:0044109 "cellular alcohol catabolic process" evidence=IMP]
[GO:0005987 "sucrose catabolic process" evidence=IMP] [GO:0070577
"histone acetyl-lysine binding" evidence=IMP;IDA] [GO:0042148
"strand invasion" evidence=IMP] [GO:0061412 "positive regulation of
transcription from RNA polymerase II promoter in response to amino
acid starvation" evidence=IMP] [GO:0001102 "RNA polymerase II
activating transcription factor binding" evidence=IPI]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR014978 InterPro:IPR017956 Pfam:PF00176 Pfam:PF00271
Pfam:PF00439 Pfam:PF08880 PRINTS:PR00503 PROSITE:PS50014
PROSITE:PS51194 SMART:SM00297 SMART:SM00384 SMART:SM00490
SMART:SM00951 SGD:S000005816 GO:GO:0005524 EMBL:BK006948
GO:GO:0006351 GO:GO:0006261 GO:GO:0016514 GO:GO:0006302
GO:GO:0004386 GO:GO:0005987 GO:GO:0042766 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043044
Gene3D:1.20.920.10 SUPFAM:SSF47370 PROSITE:PS00633 GO:GO:0070577
InterPro:IPR018359 GeneTree:ENSGT00550000074659 InterPro:IPR014012
PROSITE:PS51204 EMBL:X89633 GO:GO:0008094 HOGENOM:HOG000172362
GO:GO:0031492 RefSeq:NP_014933.3 GeneID:854465 KEGG:sce:YOR290C
KO:K11786 GO:GO:0061412 GO:GO:0042148 OrthoDB:EOG4D565R EMBL:M61703
EMBL:X57837 EMBL:D90459 EMBL:Z75198 EMBL:Z75199 PIR:S15047
RefSeq:NP_014935.3 ProteinModelPortal:P22082 SMR:P22082
DIP:DIP-1150N IntAct:P22082 MINT:MINT-600461 STRING:P22082
PaxDb:P22082 PeptideAtlas:P22082 EnsemblFungi:YOR290C GeneID:854467
KEGG:sce:YOR292C CYGD:YOR290c OMA:HPNFLSK NextBio:976750
Genevestigator:P22082 GermOnline:YOR290C GO:GO:0044109
GO:GO:0031496 Uniprot:P22082
Length = 1703
Score = 759 (272.2 bits), Expect = 1.3e-69, Sum P(2) = 1.3e-69
Identities = 238/761 (31%), Positives = 371/761 (48%)
Query: 638 AKRKLENYKAKYGTTVINICDERWKQPQRVISLRSSKDGTREAFVKWTGLPYDECTWEKL 697
AK +L+ KA I + D+ + R+ L + ++ + + T E +
Sbjct: 652 AKERLQALKANDEEAYIKLLDQT--KDTRITHLLRQTNAFLDSLTRAVK-DQQKYTKEMI 708
Query: 698 DEPALEKYSHLTDLFVQFERQTLKKDASEDELPRGKGDCQQSEIVALTEQPEELKGGALF 757
D E + DL + + + + D +D + + +QP L GG L
Sbjct: 709 DSHIKEASEEVDDLSMVPKMKDEEYDDDDDNSNVDYYNVAHRIKEDIKKQPSILVGGTLK 768
Query: 758 PHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFK-AKLPCLVLVPLST 816
+Q++ L W+ ++ N ILADEMGLGKT+ + ++ LY E K + P LV+VPLST
Sbjct: 769 DYQIKGLQWMVSLFNNHLNGILADEMGLGKTIQTISLLTYLY-EMKNIRGPYLVIVPLST 827
Query: 817 MPNWLAEFALWAPNLNVVEYHGCAKARAIIRQYEWHASDPDNLNKKTSSYKFNVLLTTYE 876
+ NW +EFA WAP L + + G R +Q + A + D + +++++ + E
Sbjct: 828 LSNWSSEFAKWAPTLRTISFKGSPNERKA-KQAKIRAGEFDVV---LTTFEYIIK----E 879
Query: 877 MILADSSHLRGVPWEVLVVDEGHRXXXXXXXXXXXXXXXXXQHRVLLTGTPLQNNIGEMY 936
L S ++ V +++ + +R++LTGTPLQNN+ E++
Sbjct: 880 RALL--SKVKWV--HMIIDEGHRMKNAQSKLSLTLNTHYHADYRLILTGTPLQNNLPELW 935
Query: 937 NLLNFLQPASFPSLSSFEEKFND-LTTT---QKVE-----------ELKKLVAPHMLRRL 981
LLNF+ P F S+ SF+E FN T K+E L K++ P +LRRL
Sbjct: 936 ALLNFVLPKIFNSVKSFDEWFNTPFANTGGQDKIELSEEETLLVIRRLHKVLRPFLLRRL 995
Query: 982 KKDAMQNIPPKTERMVPVELSSIQAEYYRAMLTKNYQIL--RNIGKGVAQQSMLNIVMQL 1039
KKD + +P K E++V ++S++Q Y+ ML + +N K V + N +MQL
Sbjct: 996 KKDVEKELPDKVEKVVKCKMSALQQIMYQQMLKYRRLFIGDQNNKKMVGLRGFNNQIMQL 1055
Query: 1040 RKVCNHPYLIPGTEPDSGSVEFLHEMRIKASAKLTLLHSMLKVLYKEGHRVLIFSQMTKL 1099
+K+CNHP++ E ++ + + K LL +L L GHRVLIF QMT++
Sbjct: 1056 KKICNHPFVFEEVEDQINPTRETNDDIWRVAGKFELLDRILPKLKATGHRVLIFFQMTQI 1115
Query: 1100 LDILEDYLNIEFGPKTYERVDGSVSVGDRQAAITRFNQDKSRFV-FLLSTRSCGLGINLA 1158
+DI+ED+L K Y R+DG +R + FN S ++ F+LSTR+ GLG+NL
Sbjct: 1116 MDIMEDFLRY-INIK-YLRLDGHTKSDERSELLRLFNAPDSEYLCFILSTRAGGLGLNLQ 1173
Query: 1159 TADTVIIYDSDFNPHADIQAMNRAHRIGQSKRLLVYRLVVRASVEERILQLAKKKLMLD- 1217
TADTVII+D+D+NPH D+QA +RAHRIGQ + + RL+ SVEE IL+ A KKL +D
Sbjct: 1174 TADTVIIFDTDWNPHQDLQAQDRAHRIGQKNEVRILRLITTNSVEEVILERAYKKLDIDG 1233
Query: 1218 ---QL--FVNKSGSQKEVEDILRWGTEELFNDSPGINGKDMGENNTSIEEAVRDLEQKHR 1272
Q F NKS S+++ E +LR L D+ K E+ EE ++D E
Sbjct: 1234 KVIQAGKFDNKSTSEEQ-EALLR----SLL-DAEEERRKKR-ESGVEEEEELKDSEINEI 1286
Query: 1273 KRGGGLGDVYQDKCTEGSTKIVWDENAIARLLDRSNLQS-GSTDL-AEGDLENDMLGSV- 1329
+ E +K + +RLL++S L S D+ AE E +V
Sbjct: 1287 LARNDEEMAVLTRMDEDRSKKEEELGVKSRLLEKSELPDIYSRDIGAELKREESESAAVY 1346
Query: 1330 --------KATEWNEETTEDQAESPVAAVDDASAENSERKE 1362
K +N+ +E+Q DD + RK+
Sbjct: 1347 NGRGARERKTATYNDNMSEEQWLRQFEVSDDEKNDKQARKQ 1387
Score = 37 (18.1 bits), Expect = 1.3e-69, Sum P(2) = 1.3e-69
Identities = 12/48 (25%), Positives = 24/48 (50%)
Query: 1305 DRSNLQSGSTDLAEGDLENDMLGSVKATEWNEETTEDQAESPVAAVDD 1352
D+S G+ ++ +++ D G N + ED+A++ +A DD
Sbjct: 1393 DKSEAIDGNGEIKGENIDADNDGP----RINNISAEDRADTDLAMNDD 1436
>CGD|CAL0000801 [details] [associations]
symbol:orf19.1720 species:5476 "Candida albicans" [GO:0005575
"cellular_component" evidence=ND] [GO:0006312 "mitotic
recombination" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
CGD:CAL0000801 GO:GO:0005524 GO:GO:0003677 GO:GO:0004386
EMBL:AACQ01000014 EMBL:AACQ01000013 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 RefSeq:XP_721671.1
RefSeq:XP_721791.1 ProteinModelPortal:Q5AJ72 GeneID:3636620
GeneID:3636670 KEGG:cal:CaO19.1720 KEGG:cal:CaO19.9288
Uniprot:Q5AJ72
Length = 864
Score = 371 (135.7 bits), Expect = 1.9e-69, Sum P(4) = 1.9e-69
Identities = 108/321 (33%), Positives = 167/321 (52%)
Query: 990 PPKTERMVPVELSSIQAEYYRAMLTKNYQILRNIGKGVAQQSMLNIVMQLRKVCNHPYLI 1049
P E +V + + + ++ YQ + K + Q++ I QLR +CN P++
Sbjct: 538 PSYDEALVKIRHIKSKTKIQSILIDAIYQDILKEAKHLKLQNLKMI--QLRNICNSPFIY 595
Query: 1050 PGTEPDSGSVEFLHEMRIKASAKLTLLHSMLKVLYKEGHRVLIFSQMTKLLDILEDYLNI 1109
P E I+ SAK +L+ +L L GH+VLIF+Q TK+LD+LED+L
Sbjct: 596 YNY-PILDQAEV-----IRNSAKFQVLNQLLPPLLSSGHKVLIFAQFTKVLDLLEDWL-- 647
Query: 1110 EFGPKTYE---RVDGSVSVGDRQAAITRFNQDKSRFVFLLSTRSCGLGINLATADTVIIY 1166
E P ++ R+DGS + R I++FN + VFL STR+ GLGINL ADTVI+
Sbjct: 648 EESPLSHGKICRLDGSTNHQIRDEQISQFNNNPKFKVFLSSTRAGGLGINLVAADTVILM 707
Query: 1167 DSDFNPHADIQAMNRAHRIGQSKRLLVYRLVVRASVEERILQLAKKKLMLDQLFVNKSGS 1226
D+D+NP D+QA++R HRIGQ + ++R V++ S+EE ++ + K L++L + + G
Sbjct: 708 DNDWNPQMDLQAIDRVHRIGQINPVKIFRFVIKDSIEEVLISRSGSKRFLERLVI-QMGQ 766
Query: 1227 QKEVEDILRWGTEELFNDSPGINGKDMGENNTSIEEAVRDLEQKHRKRGGGLGDVYQDKC 1286
K + N+ I +N+ SI + + +L + H K G QD
Sbjct: 767 FKFSNFNKKLTAATTSNEQGAI------KNDWSINDMM-ELSKIHFKSTQN-GQTSQDSA 818
Query: 1287 TEGSTKIVWDENAIARLLDRS 1307
E KI+ + I LLDRS
Sbjct: 819 EEDE-KILLSDQEIDELLDRS 838
Score = 364 (133.2 bits), Expect = 1.9e-69, Sum P(4) = 1.9e-69
Identities = 86/234 (36%), Positives = 129/234 (55%)
Query: 737 QQSEIVALTEQPEELKGGALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFIS 796
Q S + +QP+ + GG L +Q++ L WL + N ILADEMGLGKT+ +F+S
Sbjct: 156 QNSSKITNNKQPKLITGGQLKDYQMDGLEWLITLFQNGLNGILADEMGLGKTLQCISFLS 215
Query: 797 SLYCEFKAKLPCLVLVPLSTMPNWLAEFALWAPNLNVVEYHGCAKARAIIRQYEWHASDP 856
L E P LV+VP+ST+ NW E +AP + V +Y G + R +D
Sbjct: 216 HLI-ENGINGPFLVVVPVSTLSNWYNEIRKFAPKIKVTKYIGTKQER----------NDI 264
Query: 857 DNLNKKTSSYKFNVLLTTYEMILADSSHLRGVPWEVLVVDEGHRXXXXXXXXXXXXXXXX 916
D L ++ ++ N++LT+YE+ + D + L + W+ L+VDEGHR
Sbjct: 265 DLLQQQETT---NIILTSYEISIRDFNKLVKINWKYLIVDEGHRLKNSQCLLIKILKKLN 321
Query: 917 XQHRVLLTGTPLQNNIGEMYNLLNFLQPASFPSLSSFEEKFNDLTTTQKVEELK 970
+R+LLTGTPLQNN+ E+++LLNF+ P F L F++ FN T+ EL+
Sbjct: 322 VSNRLLLTGTPLQNNLNELWSLLNFILPDIFHDLELFQQWFNFDELTELAGELE 375
Score = 105 (42.0 bits), Expect = 1.9e-69, Sum P(4) = 1.9e-69
Identities = 20/56 (35%), Positives = 37/56 (66%)
Query: 966 VEELKKLVAPHMLRRLKKDAMQNIPPKTERMVPVELSSIQAE-YYRAMLTKNYQIL 1020
++ L ++ P MLRRLK+D ++N+PPK E ++ + ++ +Q + YY A+ K + L
Sbjct: 398 IKNLHTILKPFMLRRLKRDVIKNLPPKKEYLLHIPMTKLQKKIYYDAVNDKLFDSL 453
Score = 53 (23.7 bits), Expect = 1.9e-69, Sum P(4) = 1.9e-69
Identities = 10/54 (18%), Positives = 30/54 (55%)
Query: 18 LKRKRRKLPCGPGLSNGKEE--NLVTSESPRNTPSAKRRLKNEINADRSSTKKK 69
+K++R+ P +NGK++ +++++ +T S + ++ N+ + + K+
Sbjct: 113 IKKRRKTKPKSKSTANGKQDIVSMLSTNISDSTKSTREAIEKSQNSSKITNNKQ 166
Score = 52 (23.4 bits), Expect = 2.4e-69, Sum P(4) = 2.4e-69
Identities = 22/85 (25%), Positives = 39/85 (45%)
Query: 235 DSLADTKFHPAEE---VLPHSQV-TKSE---QNDEVPVEKHEK------SSTNGSSGIKF 281
D++ T EE V P + V KS+ ++D P++K K S+ NG I
Sbjct: 76 DNILQTSLERKEEQNNVAPPAPVPAKSDSKNESDTQPIKKRRKTKPKSKSTANGKQDIVS 135
Query: 282 VLAIGASERDRKRKPEV-KDEDSQK 305
+L+ S+ + + + K ++S K
Sbjct: 136 MLSTNISDSTKSTREAIEKSQNSSK 160
Score = 43 (20.2 bits), Expect = 1.0e-34, Sum P(4) = 1.0e-34
Identities = 24/89 (26%), Positives = 34/89 (38%)
Query: 104 PPLKRIPNGKWQCPKCTQKNDQLKPISNLDSISKRARSKIITIKSQSGVKSSGADKVSQI 163
P K NGK N S ++I K S IT Q + + G K Q+
Sbjct: 121 PKSKSTANGKQDIVSMLSTNISDSTKSTREAIEKSQNSSKITNNKQPKLITGGQLKDYQM 180
Query: 164 FGNSILARKRSNKGKSVLA--LGV-KSLE 189
G L N +LA +G+ K+L+
Sbjct: 181 DGLEWLITLFQNGLNGILADEMGLGKTLQ 209
Score = 43 (20.2 bits), Expect = 3.6e-29, Sum P(2) = 3.6e-29
Identities = 7/20 (35%), Positives = 14/20 (70%)
Query: 954 EEKFNDLTTTQKVEELKKLV 973
+++FN L+ +K+ L KL+
Sbjct: 45 QQQFNQLSKDKKMNRLNKLI 64
Score = 42 (19.8 bits), Expect = 2.6e-68, Sum P(4) = 2.6e-68
Identities = 17/63 (26%), Positives = 28/63 (44%)
Query: 245 AEEVLPHSQVTKSEQNDEVP-VEKHEKSSTNGSSGIKFVLAIGASERDRKRKPEVKDEDS 303
A+ +L S K EQN+ P KS + S + + ++ RK KP+ K +
Sbjct: 75 ADNILQTSLERKEEQNNVAPPAPVPAKSDSKNESDTQPI------KKRRKTKPKSKSTAN 128
Query: 304 QKK 306
K+
Sbjct: 129 GKQ 131
Score = 39 (18.8 bits), Expect = 9.4e-36, Sum P(4) = 9.4e-36
Identities = 9/28 (32%), Positives = 14/28 (50%)
Query: 634 LKVLAKRKLENYKAKYGTTVINICDERW 661
+K+L K + N GT + N +E W
Sbjct: 314 IKILKKLNVSNRLLLTGTPLQNNLNELW 341
>UNIPROTKB|Q5AJ72 [details] [associations]
symbol:CaO19.1720 "Putative uncharacterized protein"
species:237561 "Candida albicans SC5314" [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 CGD:CAL0000801 GO:GO:0005524 GO:GO:0003677
GO:GO:0004386 EMBL:AACQ01000014 EMBL:AACQ01000013 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 RefSeq:XP_721671.1
RefSeq:XP_721791.1 ProteinModelPortal:Q5AJ72 GeneID:3636620
GeneID:3636670 KEGG:cal:CaO19.1720 KEGG:cal:CaO19.9288
Uniprot:Q5AJ72
Length = 864
Score = 371 (135.7 bits), Expect = 1.9e-69, Sum P(4) = 1.9e-69
Identities = 108/321 (33%), Positives = 167/321 (52%)
Query: 990 PPKTERMVPVELSSIQAEYYRAMLTKNYQILRNIGKGVAQQSMLNIVMQLRKVCNHPYLI 1049
P E +V + + + ++ YQ + K + Q++ I QLR +CN P++
Sbjct: 538 PSYDEALVKIRHIKSKTKIQSILIDAIYQDILKEAKHLKLQNLKMI--QLRNICNSPFIY 595
Query: 1050 PGTEPDSGSVEFLHEMRIKASAKLTLLHSMLKVLYKEGHRVLIFSQMTKLLDILEDYLNI 1109
P E I+ SAK +L+ +L L GH+VLIF+Q TK+LD+LED+L
Sbjct: 596 YNY-PILDQAEV-----IRNSAKFQVLNQLLPPLLSSGHKVLIFAQFTKVLDLLEDWL-- 647
Query: 1110 EFGPKTYE---RVDGSVSVGDRQAAITRFNQDKSRFVFLLSTRSCGLGINLATADTVIIY 1166
E P ++ R+DGS + R I++FN + VFL STR+ GLGINL ADTVI+
Sbjct: 648 EESPLSHGKICRLDGSTNHQIRDEQISQFNNNPKFKVFLSSTRAGGLGINLVAADTVILM 707
Query: 1167 DSDFNPHADIQAMNRAHRIGQSKRLLVYRLVVRASVEERILQLAKKKLMLDQLFVNKSGS 1226
D+D+NP D+QA++R HRIGQ + ++R V++ S+EE ++ + K L++L + + G
Sbjct: 708 DNDWNPQMDLQAIDRVHRIGQINPVKIFRFVIKDSIEEVLISRSGSKRFLERLVI-QMGQ 766
Query: 1227 QKEVEDILRWGTEELFNDSPGINGKDMGENNTSIEEAVRDLEQKHRKRGGGLGDVYQDKC 1286
K + N+ I +N+ SI + + +L + H K G QD
Sbjct: 767 FKFSNFNKKLTAATTSNEQGAI------KNDWSINDMM-ELSKIHFKSTQN-GQTSQDSA 818
Query: 1287 TEGSTKIVWDENAIARLLDRS 1307
E KI+ + I LLDRS
Sbjct: 819 EEDE-KILLSDQEIDELLDRS 838
Score = 364 (133.2 bits), Expect = 1.9e-69, Sum P(4) = 1.9e-69
Identities = 86/234 (36%), Positives = 129/234 (55%)
Query: 737 QQSEIVALTEQPEELKGGALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFIS 796
Q S + +QP+ + GG L +Q++ L WL + N ILADEMGLGKT+ +F+S
Sbjct: 156 QNSSKITNNKQPKLITGGQLKDYQMDGLEWLITLFQNGLNGILADEMGLGKTLQCISFLS 215
Query: 797 SLYCEFKAKLPCLVLVPLSTMPNWLAEFALWAPNLNVVEYHGCAKARAIIRQYEWHASDP 856
L E P LV+VP+ST+ NW E +AP + V +Y G + R +D
Sbjct: 216 HLI-ENGINGPFLVVVPVSTLSNWYNEIRKFAPKIKVTKYIGTKQER----------NDI 264
Query: 857 DNLNKKTSSYKFNVLLTTYEMILADSSHLRGVPWEVLVVDEGHRXXXXXXXXXXXXXXXX 916
D L ++ ++ N++LT+YE+ + D + L + W+ L+VDEGHR
Sbjct: 265 DLLQQQETT---NIILTSYEISIRDFNKLVKINWKYLIVDEGHRLKNSQCLLIKILKKLN 321
Query: 917 XQHRVLLTGTPLQNNIGEMYNLLNFLQPASFPSLSSFEEKFNDLTTTQKVEELK 970
+R+LLTGTPLQNN+ E+++LLNF+ P F L F++ FN T+ EL+
Sbjct: 322 VSNRLLLTGTPLQNNLNELWSLLNFILPDIFHDLELFQQWFNFDELTELAGELE 375
Score = 105 (42.0 bits), Expect = 1.9e-69, Sum P(4) = 1.9e-69
Identities = 20/56 (35%), Positives = 37/56 (66%)
Query: 966 VEELKKLVAPHMLRRLKKDAMQNIPPKTERMVPVELSSIQAE-YYRAMLTKNYQIL 1020
++ L ++ P MLRRLK+D ++N+PPK E ++ + ++ +Q + YY A+ K + L
Sbjct: 398 IKNLHTILKPFMLRRLKRDVIKNLPPKKEYLLHIPMTKLQKKIYYDAVNDKLFDSL 453
Score = 53 (23.7 bits), Expect = 1.9e-69, Sum P(4) = 1.9e-69
Identities = 10/54 (18%), Positives = 30/54 (55%)
Query: 18 LKRKRRKLPCGPGLSNGKEE--NLVTSESPRNTPSAKRRLKNEINADRSSTKKK 69
+K++R+ P +NGK++ +++++ +T S + ++ N+ + + K+
Sbjct: 113 IKKRRKTKPKSKSTANGKQDIVSMLSTNISDSTKSTREAIEKSQNSSKITNNKQ 166
Score = 52 (23.4 bits), Expect = 2.4e-69, Sum P(4) = 2.4e-69
Identities = 22/85 (25%), Positives = 39/85 (45%)
Query: 235 DSLADTKFHPAEE---VLPHSQV-TKSE---QNDEVPVEKHEK------SSTNGSSGIKF 281
D++ T EE V P + V KS+ ++D P++K K S+ NG I
Sbjct: 76 DNILQTSLERKEEQNNVAPPAPVPAKSDSKNESDTQPIKKRRKTKPKSKSTANGKQDIVS 135
Query: 282 VLAIGASERDRKRKPEV-KDEDSQK 305
+L+ S+ + + + K ++S K
Sbjct: 136 MLSTNISDSTKSTREAIEKSQNSSK 160
Score = 43 (20.2 bits), Expect = 1.0e-34, Sum P(4) = 1.0e-34
Identities = 24/89 (26%), Positives = 34/89 (38%)
Query: 104 PPLKRIPNGKWQCPKCTQKNDQLKPISNLDSISKRARSKIITIKSQSGVKSSGADKVSQI 163
P K NGK N S ++I K S IT Q + + G K Q+
Sbjct: 121 PKSKSTANGKQDIVSMLSTNISDSTKSTREAIEKSQNSSKITNNKQPKLITGGQLKDYQM 180
Query: 164 FGNSILARKRSNKGKSVLA--LGV-KSLE 189
G L N +LA +G+ K+L+
Sbjct: 181 DGLEWLITLFQNGLNGILADEMGLGKTLQ 209
Score = 43 (20.2 bits), Expect = 3.6e-29, Sum P(2) = 3.6e-29
Identities = 7/20 (35%), Positives = 14/20 (70%)
Query: 954 EEKFNDLTTTQKVEELKKLV 973
+++FN L+ +K+ L KL+
Sbjct: 45 QQQFNQLSKDKKMNRLNKLI 64
Score = 42 (19.8 bits), Expect = 2.6e-68, Sum P(4) = 2.6e-68
Identities = 17/63 (26%), Positives = 28/63 (44%)
Query: 245 AEEVLPHSQVTKSEQNDEVP-VEKHEKSSTNGSSGIKFVLAIGASERDRKRKPEVKDEDS 303
A+ +L S K EQN+ P KS + S + + ++ RK KP+ K +
Sbjct: 75 ADNILQTSLERKEEQNNVAPPAPVPAKSDSKNESDTQPI------KKRRKTKPKSKSTAN 128
Query: 304 QKK 306
K+
Sbjct: 129 GKQ 131
Score = 39 (18.8 bits), Expect = 9.4e-36, Sum P(4) = 9.4e-36
Identities = 9/28 (32%), Positives = 14/28 (50%)
Query: 634 LKVLAKRKLENYKAKYGTTVINICDERW 661
+K+L K + N GT + N +E W
Sbjct: 314 IKILKKLNVSNRLLLTGTPLQNNLNELW 341
>MGI|MGI:1915308 [details] [associations]
symbol:Chd1l "chromodomain helicase DNA binding protein
1-like" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISO] [GO:0006200 "ATP
catabolic process" evidence=ISO] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0006338 "chromatin remodeling" evidence=ISO]
[GO:0006974 "response to DNA damage stimulus" evidence=ISO]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0016887 "ATPase
activity" evidence=ISO] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
MGI:MGI:1915308 GO:GO:0005886 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 GO:GO:0003677 GO:GO:0006281
GO:GO:0006974 GO:GO:0016887 GO:GO:0006338 GO:GO:0004386 HSSP:Q97XQ5
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR002589 PROSITE:PS51154 CTD:9557 HOGENOM:HOG000030789
HOVERGEN:HBG077542 OrthoDB:EOG4SXNBV OMA:TCQTIAL ChiTaRS:CHD1L
EMBL:AK014473 EMBL:AK165656 EMBL:BC052385 EMBL:BC057567
EMBL:BC062966 IPI:IPI00466859 IPI:IPI00890897 RefSeq:NP_080815.1
UniGene:Mm.41447 ProteinModelPortal:Q9CXF7 SMR:Q9CXF7
DIP:DIP-58953N STRING:Q9CXF7 PhosphoSite:Q9CXF7 PaxDb:Q9CXF7
PRIDE:Q9CXF7 Ensembl:ENSMUST00000029730 GeneID:68058 KEGG:mmu:68058
UCSC:uc008qow.1 UCSC:uc008qox.1 GeneTree:ENSGT00670000098110
InParanoid:Q9CXF7 NextBio:326336 Bgee:Q9CXF7 Genevestigator:Q9CXF7
Uniprot:Q9CXF7
Length = 900
Score = 713 (256.0 bits), Expect = 2.4e-69, P = 2.4e-69
Identities = 167/400 (41%), Positives = 239/400 (59%)
Query: 868 FNVLLTTYEMILADSSHLRGVPWEVLVVDEGHRXXXXXXXXXXXXXXXXXQHRVLLTGTP 927
F+VLLTTYE+ L D+S L+ W VL VDE HR R+LLTGTP
Sbjct: 140 FHVLLTTYEICLKDASFLKSFSWSVLAVDEAHRLKNQSSLLHRTLSEFSAVFRLLLTGTP 199
Query: 928 LQNNIGEMYNLLNFLQPASF--PSLSSFEEKFNDLTTTQK-VEELKKLVAPHMLRRLKKD 984
+QN++ E+Y+LL ++P F + F +++ D+ K EL +L+ P +LRR+K
Sbjct: 200 IQNSLRELYSLLCVVEPDLFCREQVEDFVQRYQDIEKESKSASELHRLLQPFLLRRVKAQ 259
Query: 985 AMQNIPPKTERMVPVELSSIQAEYYRAMLTKNYQILRNIGKGVAQQSMLNIVMQLRKVCN 1044
+P KTE +V +S++Q +YY+A+L K+ N + + + NI+ QLRK +
Sbjct: 260 VATELPKKTEVVVYHGMSALQKKYYKAILMKDLDAFEN--ETAKKVKLQNILTQLRKCVD 317
Query: 1045 HPYLIPGTEPDSGSVEFLHEMRIKASAKLTLLHSMLKVLYKEGHRVLIFSQMTKLLDILE 1104
HPYL G EP+ V E I+AS KL LL +L LY GHRVL+FSQMT +LDIL+
Sbjct: 318 HPYLFDGVEPEPFEVG---EHLIEASGKLHLLDRLLAFLYSGGHRVLLFSQMTHMLDILQ 374
Query: 1105 DYLNIEFGPKTYERVDGSVSVGDRQAAITRFNQDKSRFVFLLSTRSCGLGINLATADTVI 1164
DY+ ++ +YERVDGSV +R AI F ++ FVFLLSTR+ G+G+NL ADTVI
Sbjct: 375 DYM--DYRGYSYERVDGSVRGEERHLAIKNFG-NQPIFVFLLSTRAGGVGMNLTAADTVI 431
Query: 1165 IYDSDFNPHADIQAMNRAHRIGQSKRLLVYRLVVRASVEERILQLAKKKLMLDQLFVNKS 1224
DSDFNP D+QA RAHRIGQ+K + V RL+ R +VEE + + A KL L + +
Sbjct: 432 FVDSDFNPQNDLQAAARAHRIGQNKSVKVIRLIGRDTVEEIVYRKAASKLQLTNMVIEGG 491
Query: 1225 ----GSQK-------EVEDILRWGTEELFNDSPGINGKDM 1253
G+QK ++ +IL++G ++L + S G + +D+
Sbjct: 492 HFTPGAQKPSAEADFQLSEILKFGLDKLLS-SEGSSMEDI 530
Score = 658 (236.7 bits), Expect = 1.5e-62, P = 1.5e-62
Identities = 160/412 (38%), Positives = 225/412 (54%)
Query: 751 LKGGALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLV 810
L G L +QLE +NWL +C+H IL DEMGLGKT A + L + P LV
Sbjct: 35 LTGIRLRSYQLEGVNWLVQCFHCQNGCILGDEMGLGKTCQTIALLIYLVGRLNDEGPFLV 94
Query: 811 LVPLSTMPNWLAEFALWAPNLNVVEYHGCAKARAIIRQYEWHASDPDNLNKKTSSYKFNV 870
L PLS + NW E +AP L+ V Y G + RA ++Q +L +++ F+V
Sbjct: 95 LCPLSVLSNWKEEMERFAPGLSCVTYTGDKEERARLQQ---------DLRQESG---FHV 142
Query: 871 LLTTYEMILADSSHLRGVPWEVLVVDEGHRXXXXXXXXXXXXXXXXXQHRVLLTGTPLQN 930
LLTTYE+ L D+S L+ W VL VDE HR R+LLTGTP+QN
Sbjct: 143 LLTTYEICLKDASFLKSFSWSVLAVDEAHRLKNQSSLLHRTLSEFSAVFRLLLTGTPIQN 202
Query: 931 NIGEMYNLLNFLQPASF--PSLSSFEEKFNDLTTTQK-VEELKKLVAPHMLRRLKKDAMQ 987
++ E+Y+LL ++P F + F +++ D+ K EL +L+ P +LRR+K
Sbjct: 203 SLRELYSLLCVVEPDLFCREQVEDFVQRYQDIEKESKSASELHRLLQPFLLRRVKAQVAT 262
Query: 988 NIPPKTERMVPVELSSIQAEYYRAMLTKNYQILRNIGKGVAQQSMLNIVMQLRKVCNHPY 1047
+P KTE +V +S++Q +YY+A+L K+ N + + + NI+ QLRK +HPY
Sbjct: 263 ELPKKTEVVVYHGMSALQKKYYKAILMKDLDAFEN--ETAKKVKLQNILTQLRKCVDHPY 320
Query: 1048 LIPGTEPDSGSVEFLHEMRIKASAKLTLLHSMLKVLYKEGHRVLIFSQMTKLLDILEDYL 1107
L G EP+ V E I+AS KL LL +L LY GHRVL+FSQMT +LDIL+DY+
Sbjct: 321 LFDGVEPEPFEVG---EHLIEASGKLHLLDRLLAFLYSGGHRVLLFSQMTHMLDILQDYM 377
Query: 1108 NIEFGPKTYERVDGSVSVGDRQAAITRF-NQDKSRFVFLLSTRSCGLGINLA 1158
++ +YERVDGSV +R AI F NQ F+ G+ + A
Sbjct: 378 --DYRGYSYERVDGSVRGEERHLAIKNFGNQPIFVFLLSTRAGGVGMNLTAA 427
>ASPGD|ASPL0000047400 [details] [associations]
symbol:AN2285 species:162425 "Emericella nidulans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0031011 "Ino80 complex" evidence=IEA] [GO:0043140
"ATP-dependent 3'-5' DNA helicase activity" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=IEA] [GO:0042766 "nucleosome
mobilization" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0043486 "histone exchange" evidence=IEA] [GO:0006348 "chromatin
silencing at telomere" evidence=IEA] [GO:0006366 "transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0016584
"nucleosome positioning" evidence=IEA] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0043618 "regulation of transcription from RNA
polymerase II promoter in response to stress" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF13892 PROSITE:PS51194
PROSITE:PS51413 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0006355 GO:GO:0003677 EMBL:BN001307 GO:GO:0006281
GO:GO:0006351 GO:GO:0016568 GO:GO:0004386 EMBL:AACD01000038
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
KO:K11665 RefSeq:XP_659889.1 ProteinModelPortal:Q5BAZ5
STRING:Q5BAZ5 EnsemblFungi:CADANIAT00008977 GeneID:2874790
KEGG:ani:AN2285.2 HOGENOM:HOG000048482 OMA:LYFQMTR
OrthoDB:EOG41G6C8 Uniprot:Q5BAZ5
Length = 1612
Score = 441 (160.3 bits), Expect = 5.2e-69, Sum P(3) = 5.2e-69
Identities = 121/376 (32%), Positives = 190/376 (50%)
Query: 699 EPALEKYSHLTDLFVQFERQTLKK-DASEDEL--PRGKGDCQQSEIVALTEQPEELKGGA 755
+ A++K F + T+ D SE P GD + S+ LT + +E
Sbjct: 746 QSAVQKAQERARAFDDPNKSTMDTMDDSELNFQNPTSLGDIEISQPTMLTAKLKE----- 800
Query: 756 LFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLS 815
+QL+ LNWL + + N ILADEMGLGKT+ + + ++ L P LV+ P S
Sbjct: 801 ---YQLKGLNWLVNLYEQGINGILADEMGLGKTIQSISVMAYLAEVHNIWGPFLVIAPAS 857
Query: 816 TMPNWLAEFALWAPNLNVVEYHGCAKARAIIRQYEWHASDPDNLNKKTSSYKFNVLLTTY 875
T+ NW E + PN+ V+ Y G AK R I+R++ W D ++ T +F+VL+T+Y
Sbjct: 858 TLHNWQQEITKFVPNIKVLPYWGNAKDRKILRKF-W---DRKHITY-TKESEFHVLVTSY 912
Query: 876 EMILADSSHLRGVPWEVLVVDEGHRXXXXXXXXXXXXXXXXXQHRVLLTGTPLQNNIGEM 935
++++ D+ + + V W+ +++DE ++R+LLTGTP+QNN+ E+
Sbjct: 913 QLVVLDAQYFQKVKWQYMILDEAQAIKSSQSSRWKSLLGFHCRNRLLLTGTPIQNNMQEL 972
Query: 936 YNLLNFLQPASFPSLSSFEEKFN-DL------TTTQKVEELKKL---VAPHMLRRLKKDA 985
+ LL+F+ P F S F E F+ D+ T ++L++L + P MLRR+KK
Sbjct: 973 WALLHFIMPTLFDSHDEFSEWFSKDIESHAQSNTKLNEDQLRRLHMILKPFMLRRVKKHV 1032
Query: 986 MQNIPPKTERMVPVELSSIQAEYYRAMLTKNYQILRNIGKGVA-----QQSMLNIVMQLR 1040
Q + K E+ V +L+ Q Y L I+ I K +++N+VMQ R
Sbjct: 1033 QQELGDKVEKDVFCDLTYRQRALY-TNLRNRVSIMDLIEKAAVGDETDSTTLMNLVMQFR 1091
Query: 1041 KVCNHPYLIPGTEPDS 1056
KVCNHP L E S
Sbjct: 1092 KVCNHPDLFERAETKS 1107
Score = 371 (135.7 bits), Expect = 5.2e-69, Sum P(3) = 5.2e-69
Identities = 82/185 (44%), Positives = 119/185 (64%)
Query: 1046 PYLIPGT--EPDSGSVEFLH----EMR--IKASAKLTLLHSMLKVLYKEGHRVLIFSQMT 1097
PY +P EP S + H MR + S KL L +L+ L GHRVL++ QMT
Sbjct: 1288 PYSLPPMLPEPISTKGRYTHIEVPSMRRFVTDSGKLAKLDELLRELKAGGHRVLLYFQMT 1347
Query: 1098 KLLDILEDYLNIEFGPKTYERVDGSVSVGDRQAAITRFNQDKSRFVFLLSTRSCGLGINL 1157
+++D++E+YL + Y R+DGS + DR+ + F Q FVFLLSTR+ GLGINL
Sbjct: 1348 RMIDLMEEYLT--YRNYKYCRLDGSTKLEDRRDTVADFQQRPDIFVFLLSTRAGGLGINL 1405
Query: 1158 ATADTVIIYDSDFNPHADIQAMNRAHRIGQSKRLLVYRLVVRASVEERILQLAKKKLMLD 1217
ADTVI YDSD+NP D QAM+RAHR+GQ++++ VYRL+ R+++EERI + A +K +
Sbjct: 1406 TAADTVIFYDSDWNPTIDSQAMDRAHRLGQTRQVTVYRLITRSTIEERIRKRALQKEEVQ 1465
Query: 1218 QLFVN 1222
++ ++
Sbjct: 1466 RVVIS 1470
Score = 43 (20.2 bits), Expect = 9.2e-35, Sum P(3) = 9.2e-35
Identities = 15/72 (20%), Positives = 34/72 (47%)
Query: 1300 IARLLDRSNLQSG--STDLAEGDLENDML--GSVKATEWNEETTEDQAES-PVAAVDDAS 1354
+ RL+ RS ++ L + +++ ++ G+ ++N + + + + DD
Sbjct: 1441 VYRLITRSTIEERIRKRALQKEEVQRVVISGGAAGGVDFNTRNRDSKTKDIAMWLADDEQ 1500
Query: 1355 AENSERKEENAV 1366
AE E+KE A+
Sbjct: 1501 AELIEQKEREAL 1512
Score = 42 (19.8 bits), Expect = 5.2e-69, Sum P(3) = 5.2e-69
Identities = 17/80 (21%), Positives = 33/80 (41%)
Query: 622 SNIHNSWIPESQLKVLAKRKLENYKA-KYGTTVINICDERWKQPQRVISLRSSKDGTREA 680
S+ H S P+S V K++ E++ A +G ++ E P + + ++ +
Sbjct: 126 SHAHPSSRPDSHAHVSPKKEPESHFAVNHGAPAYSVMREPQASPPK--EAKPARAADPMS 183
Query: 681 FVKWTGLPYDECTWEKLDEP 700
F P +E K+ P
Sbjct: 184 FASILSGPTEEQAPPKIQSP 203
Score = 38 (18.4 bits), Expect = 1.4e-68, Sum P(3) = 1.4e-68
Identities = 14/65 (21%), Positives = 20/65 (30%)
Query: 244 PAEEVLPHSQVTKSEQNDEVPVEKHEKSSTNGSSGIKFVLAIGASERDRKRKPEVKDEDS 303
PA P+ T S + + H S F + GA R+P+
Sbjct: 113 PASGTSPYGPSTPSHAHPSSRPDSHAHVSPKKEPESHFAVNHGAPAYSVMREPQASPPKE 172
Query: 304 QKKLR 308
K R
Sbjct: 173 AKPAR 177
Score = 38 (18.4 bits), Expect = 2.6e-26, Sum P(3) = 2.6e-26
Identities = 13/41 (31%), Positives = 21/41 (51%)
Query: 532 QDESAVSTE-----DLGERNDKMVVEDADVSLRDNEGLTVS 567
+DES+ +T ++ +RND+ V D V E + VS
Sbjct: 1176 EDESSTATLPHTLFNIVDRNDRQAVYDIAVEGHMRELMNVS 1216
Score = 37 (18.1 bits), Expect = 1.3e-26, Sum P(3) = 1.3e-26
Identities = 11/38 (28%), Positives = 21/38 (55%)
Query: 999 VELSSIQAEYYRAMLTKNYQILRNIGKGVAQQSMLNIV 1036
V+ + QA Y A+ + + L N+ + V +Q LN++
Sbjct: 1192 VDRNDRQAVYDIAV-EGHMRELMNVSRSVFEQEGLNVI 1228
>RGD|1565642 [details] [associations]
symbol:Srcap "Snf2-related CREBBP activator protein"
species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005794 "Golgi apparatus" evidence=ISO]
[GO:0043234 "protein complex" evidence=ISO] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR017956 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00384 SMART:SM00490 RGD:1565642
GO:GO:0005524 GO:GO:0005634 GO:GO:0005794 GO:GO:0043234
GO:GO:0003677 InterPro:IPR020478 PRINTS:PR00929 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 PROSITE:PS51204 OrthoDB:EOG4B2SWB
IPI:IPI00778475 Ensembl:ENSRNOT00000054997 UCSC:RGD:1565642
ArrayExpress:D3ZWX7 Uniprot:D3ZWX7
Length = 3182
Score = 426 (155.0 bits), Expect = 8.3e-69, Sum P(3) = 8.3e-69
Identities = 111/314 (35%), Positives = 159/314 (50%)
Query: 754 GALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVP 813
G L +Q L+WL + K N ILADEMGLGKT+ + ++ L CE P L++VP
Sbjct: 626 GQLREYQHIGLDWLVTMYEKKLNGILADEMGLGKTIQTISLLAHLACEKGNWGPHLIIVP 685
Query: 814 LSTMPNWLAEFALWAPNLNVVEYHGCAKARAIIRQYEWHASDPDNLNKKTSSYKFNVLLT 873
S M NW E W P+ ++ Y+G K R + RQ W T F+V +T
Sbjct: 686 TSVMLNWEMELKRWCPSFKILTYYGAQKERKLKRQ-GW-----------TKPNAFHVCIT 733
Query: 874 TYEMILADSSHLRGVPWEVLVVDEGHRXXXXXXXXXXXXXXXXXQHRVLLTGTPLQNNIG 933
+Y+++L D R W L++DE Q R+LLTGTPLQN++
Sbjct: 734 SYKLVLQDHQAFRRKNWRYLILDEAQNIKNFKSQRWQSLLNFNSQRRLLLTGTPLQNSLM 793
Query: 934 EMYNLLNFLQPASFPSLSSFEEKF-NDLTT----TQK-----VEELKKLVAPHMLRRLKK 983
E+++L++FL P F S F+E F N LT +Q+ V+ L K++ P +LRR+K
Sbjct: 794 ELWSLMHFLMPHVFQSHREFKEWFSNPLTGMIEGSQEYNEGLVKRLHKVLRPFLLRRVKV 853
Query: 984 DAMQNIPPKTERMVPVELSSIQAEYYRAMLTKNYQILRNIGKGVAQQSMLNIVMQLRKVC 1043
D + +P K E ++ LS Q Y + + + G S++NI+MQLRKVC
Sbjct: 854 DVEKQMPKKYEHVIRCRLSKRQRCLYDDFMAQT-TTKETLATGHFM-SVINILMQLRKVC 911
Query: 1044 NHPYLI---PGTEP 1054
NHP L P T P
Sbjct: 912 NHPNLFDPRPVTSP 925
Score = 375 (137.1 bits), Expect = 8.3e-69, Sum P(3) = 8.3e-69
Identities = 78/160 (48%), Positives = 107/160 (66%)
Query: 1062 LHEMRIKASAKLTLLHSMLKVLYKEGHRVLIFSQMTKLLDILEDYLNIEFGPKTYERVDG 1121
L ++ + KL L +L+ L EGHRVLIF+QMT++LD+LE +L + Y R+DG
Sbjct: 2022 LRLIQYDCAGKLQTLAVLLRQLKAEGHRVLIFTQMTRMLDVLEQFLT--YHGHLYLRLDG 2079
Query: 1122 SVSVGDRQAAITRFNQDKSRFVFLLSTRSCGLGINLATADTVIIYDSDFNPHADIQAMNR 1181
S V RQA + RFN DK F F+LSTRS G+G+NL ADTV+ YDSD+NP D QA +R
Sbjct: 2080 STRVEQRQALMERFNADKRIFCFILSTRSGGVGVNLTGADTVVFYDSDWNPTMDAQAQDR 2139
Query: 1182 AHRIGQSKRLLVYRLVVRASVEERILQLAKKKLMLDQLFV 1221
HRIGQ++ + +YRL+ +VEE IL+ A +K ML + +
Sbjct: 2140 CHRIGQTRDVHIYRLISERTVEENILKKANQKRMLGDMAI 2179
Score = 63 (27.2 bits), Expect = 8.3e-69, Sum P(3) = 8.3e-69
Identities = 16/58 (27%), Positives = 32/58 (55%)
Query: 222 NDDDEKQLNASPTD-SLADTK-FHPAEEVLPHSQVTKSEQNDEVPVEKHEKSSTNGSS 277
N +DE+++ A+ +D L +T+ A + SQ +E++ E ++H + +GSS
Sbjct: 467 NSEDEEEVEANSSDCELEETRDVEEAAQEDSSSQSDSAEEHSEDEEDEHSEEEMSGSS 524
Score = 44 (20.5 bits), Expect = 8.1e-67, Sum P(3) = 8.1e-67
Identities = 28/148 (18%), Positives = 58/148 (39%)
Query: 468 SPNVIRSSDEECMKNDIGVDRIQVYRRSVTKECKVTKECKGENAIDLLREDDKDSDPVAV 527
+P S DEE ++ + ++ R V + + + ++A + +++ + +
Sbjct: 462 APGSGNSEDEEEVEANSSDCELEE-TRDVEEAAQEDSSSQSDSAEEHSEDEEDEHSEEEM 520
Query: 528 NGKVQDESAVSTEDLGERNDKMVVEDADVSLRDNEGLTVSEIHITCESTDKDVDVGK--K 585
+G Q E + S E ++ E+ + D++ E + + +VD G
Sbjct: 521 SGSSQSEESESDESEDAQSQSQADEEQEDEGDDDDDDFGVEYLLARDDERSEVDGGSGPP 580
Query: 586 TSGSVA-----KRVQE-PAVTESAQVKG 607
T G K + + A ES Q KG
Sbjct: 581 TPGPTTTLGPKKEITDIAAAAESLQPKG 608
Score = 42 (19.8 bits), Expect = 1.3e-66, Sum P(3) = 1.3e-66
Identities = 13/45 (28%), Positives = 21/45 (46%)
Query: 338 EKQRTNNDEVS-ASLCEVDVGTKGLDAQRKDELAEETTDPLDKSD 381
E+ + +E+S +S E + DAQ + + EE D D D
Sbjct: 511 EEDEHSEEEMSGSSQSEESESDESEDAQSQSQADEEQEDEGDDDD 555
Score = 39 (18.8 bits), Expect = 2.7e-66, Sum P(3) = 2.7e-66
Identities = 10/49 (20%), Positives = 22/49 (44%)
Query: 223 DDDEKQLNASPTDSLADTKFHPAEEVLPHSQVTKSEQNDEVPVEKHEKS 271
+D Q +++ S + H EE+ SQ +SE ++ + ++
Sbjct: 495 EDSSSQSDSAEEHSEDEEDEHSEEEMSGSSQSEESESDESEDAQSQSQA 543
>CGD|CAL0000831 [details] [associations]
symbol:orf19.1734 species:5476 "Candida albicans" [GO:0031011
"Ino80 complex" evidence=IEA] [GO:0042766 "nucleosome mobilization"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0043486
"histone exchange" evidence=IEA] [GO:0006348 "chromatin silencing
at telomere" evidence=IEA] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0016584 "nucleosome
positioning" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0043618 "regulation of transcription from RNA polymerase II
promoter in response to stress" evidence=IEA] [GO:0043140
"ATP-dependent 3'-5' DNA helicase activity" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=IEA] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF13892 PROSITE:PS51194 PROSITE:PS51413 SMART:SM00490
CGD:CAL0000831 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0003677 GO:GO:0006281 GO:GO:0006351 GO:GO:0016568
GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:AACQ01000298 EMBL:AACQ01000297
RefSeq:XP_710247.1 RefSeq:XP_710254.1 STRING:Q59KI4 GeneID:3648140
GeneID:3648148 KEGG:cal:CaO19.1734 KEGG:cal:CaO19.9302 KO:K11665
Uniprot:Q59KI4
Length = 1387
Score = 438 (159.2 bits), Expect = 2.1e-68, Sum P(4) = 2.1e-68
Identities = 119/383 (31%), Positives = 199/383 (51%)
Query: 698 DEPALEKYS--HLTDLFVQFERQTLKKDASEDEL--PRGKGD---CQQSEIVA-LT-EQP 748
DE AL + + + + ++ + + + D SE+ P G+ Q ++ +T QP
Sbjct: 606 DEEALRRMAAQNAQNALIEVQNKAKQFDNSEESFKNPDTNGEEMNFQNPTLLGDITIPQP 665
Query: 749 EELKGGALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPC 808
LK L +QL+ LNWL + + N ILADEMGLGKTV + + ++ L + P
Sbjct: 666 NMLKC-TLKEYQLKGLNWLANLYEQGINGILADEMGLGKTVQSISVLAYLAETYNMWGPF 724
Query: 809 LVLVPLSTMPNWLAEFALWAPNLNVVEYHGCAKARAIIRQYEWHASDPDNLNKKTSSYKF 868
LV+ P ST+ NW E + P V+ Y G AK R I+R++ W D +L S F
Sbjct: 725 LVVTPASTLHNWQQEITKFVPEFKVLPYWGNAKDRKILRKF-W---DRKSLRYDKDS-PF 779
Query: 869 NVLLTTYEMILADSSHLRGVPWEVLVVDEGHRXXXXXXXXXXXXXXXXXQHRVLLTGTPL 928
+VL+T+Y++I+AD ++ + + W+ +++DE ++R+LLTGTP+
Sbjct: 780 HVLVTSYQLIVADIAYFQKMKWQYMILDEAQAIKSSSSSRWKSLLNLTCRNRLLLTGTPI 839
Query: 929 QNNIGEMYNLLNFLQPASFPSLSSFEEKF-NDLTT---------TQKVEELKKLVAPHML 978
QN++ E++ LL+F+ P+ F S F + F D+ + Q++ L ++ P ML
Sbjct: 840 QNSMQELWALLHFIMPSIFDSHDEFSDWFAKDIESHAQSNTSLDEQQLRRLHMILKPFML 899
Query: 979 RRLKKDAMQNIPPKTERMVPVELSSIQAEYYRAMLTK----NYQILRNIGKGVAQQSML- 1033
RR+KK+ + K E V +L++ Q + Y+ + ++ + +L + S L
Sbjct: 900 RRIKKNVQSELGDKVEIDVYCDLTTRQKKLYQQLRSQISMSDTDLLELESNSTSSDSSLA 959
Query: 1034 NIVMQLRKVCNHPYLIPGTEPDS 1056
N+VMQ RKVCNHP L + +S
Sbjct: 960 NLVMQFRKVCNHPDLFERADVNS 982
Score = 352 (129.0 bits), Expect = 2.1e-68, Sum P(4) = 2.1e-68
Identities = 72/155 (46%), Positives = 107/155 (69%)
Query: 1067 IKASAKLTLLHSMLKVLYKEGHRVLIFSQMTKLLDILEDYLNIEFGPKTYERVDGSVSVG 1126
I S KL L +L L + GHR+LI+ QMT+++ I E+YL + Y R+DGS ++
Sbjct: 1232 IAESGKLAKLDELLIDLKRGGHRILIYFQMTRMMQIFEEYL--AYKSYKYIRLDGSTTIE 1289
Query: 1127 DRQAAITRFNQDKSRFVFLLSTRSCGLGINLATADTVIIYDSDFNPHADIQAMNRAHRIG 1186
R+ + + + F+F+LSTR+ GLG+NL +ADTVI YDSD+NP D QAM+RAHRIG
Sbjct: 1290 SRREMVQAWQTNPEIFIFMLSTRAGGLGLNLTSADTVIFYDSDWNPTIDSQAMDRAHRIG 1349
Query: 1187 QSKRLLVYRLVVRASVEERILQLAKKKLMLDQLFV 1221
Q+K++ V+RLV R ++E++IL+ AK+K + +L V
Sbjct: 1350 QTKQVKVFRLVTRNTIEQKILERAKEKEEIQKLVV 1384
Score = 61 (26.5 bits), Expect = 2.1e-68, Sum P(4) = 2.1e-68
Identities = 25/90 (27%), Positives = 45/90 (50%)
Query: 473 RSSDEECMKNDIGVDRIQVYRRSVTKECKVTKECKGENAIDLLREDDKDS-DPVA-VNGK 530
R + + K + + + ++Y + K+ K T E +G NA D L+ + K+ D A V+G
Sbjct: 534 REAKRQSRKLNFLITQTELYSHFIGKKIK-TDELEGTNADDNLKSNTKEHLDKYADVDGS 592
Query: 531 V-QDESAVSTE-DLGERNDKMVVEDADVSL 558
D +AV + D E +M ++A +L
Sbjct: 593 ATHDINAVDFDNDDEEALRRMAAQNAQNAL 622
Score = 43 (20.2 bits), Expect = 2.1e-68, Sum P(4) = 2.1e-68
Identities = 20/89 (22%), Positives = 35/89 (39%)
Query: 217 SSSCPNDDDEKQLNASPTDSLADTKFHPAEEVLPHSQVTKSEQNDEVPVEKHEKSSTNGS 276
+++ DD K + A+ TK H A + T S + P +H++ S+ S
Sbjct: 259 ATTSTTDDSNKAVAAAANG----TKDHSAT-----AGTTASANGSDTPDRRHQRQSSKPS 309
Query: 277 SGIKFVLAIGASERDRKRKPEVKDEDSQK 305
+ I I K PE++ S +
Sbjct: 310 TPI----LIKPKTEPGKGSPEIQPRRSSR 334
Score = 42 (19.8 bits), Expect = 2.6e-68, Sum P(4) = 2.6e-68
Identities = 23/127 (18%), Positives = 50/127 (39%)
Query: 171 RKRSNKGKSVLALGVKSLEKSLDSSQVDVSCSTKPENTSAGVPVEGSSSCPNDDDEKQLN 230
+++S+K + + + K+ E S ++ S++P+ E + +Q+
Sbjct: 302 QRQSSKPSTPILIKPKT-EPGKGSPEIQPRRSSRPKVKRKAFEDE-LETADKQSSTQQVK 359
Query: 231 ASPTDSLADTKF----HPAEEVLPHSQVTKSEQNDEVPVEKHEKSSTNGSSGIKFVLAIG 286
S + D K + EE H Q ++++ DE E + S + A G
Sbjct: 360 KSQESTGRDHKRVKIENKQEEQQQHQQQQQADEEDEAEAEAEAEQKPK-SGALSEAAAAG 418
Query: 287 ASERDRK 293
+ ++ K
Sbjct: 419 MTAKEFK 425
Score = 41 (19.5 bits), Expect = 9.0e-25, Sum P(3) = 9.0e-25
Identities = 11/42 (26%), Positives = 24/42 (57%)
Query: 234 TDSLADTKFHP--AEEVLPHSQVTKSE-QNDEVPVEKHEKSS 272
T+ + +T F ++P S T+ + D++P+E++ KS+
Sbjct: 1170 TNKMNNTLFDSNIRSSLIPLSLSTELKLMKDQIPLEQYPKSN 1211
Score = 39 (18.8 bits), Expect = 5.9e-26, Sum P(2) = 5.9e-26
Identities = 10/16 (62%), Positives = 10/16 (62%)
Query: 1046 PYLI-PGTEPDSGSVE 1060
P LI P TEP GS E
Sbjct: 311 PILIKPKTEPGKGSPE 326
Score = 37 (18.1 bits), Expect = 9.0e-25, Sum P(3) = 9.0e-25
Identities = 9/27 (33%), Positives = 17/27 (62%)
Query: 118 KCTQKNDQLKPISNLDSISKRARSKII 144
KCT K QLK ++ L ++ ++ + I+
Sbjct: 669 KCTLKEYQLKGLNWLANLYEQGINGIL 695
>UNIPROTKB|Q5FWR0 [details] [associations]
symbol:smarcad1 "SWI/SNF-related matrix-associated
actin-dependent regulator of chromatin subfamily A containing
DEAD/H box 1" species:8364 "Xenopus (Silurana) tropicalis"
[GO:0000729 "DNA double-strand break processing" evidence=ISS]
[GO:0035861 "site of double-strand break" evidence=ISS] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=ISS]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR003892
InterPro:IPR009060 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51140
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0043044 SUPFAM:SSF46934
GO:GO:0000729 HOGENOM:HOG000172362 GO:GO:0035861 KO:K14439
HOVERGEN:HBG055804 OrthoDB:EOG4RV2QW EMBL:AAMC01061573
EMBL:AAMC01061574 EMBL:AAMC01061575 EMBL:BC089242
RefSeq:NP_001015697.1 UniGene:Str.34312 ProteinModelPortal:Q5FWR0
GeneID:548414 KEGG:xtr:548414 Xenbase:XB-GENE-492700
InParanoid:Q5FWR0 Uniprot:Q5FWR0
Length = 1003
Score = 447 (162.4 bits), Expect = 2.3e-68, Sum P(4) = 2.3e-68
Identities = 116/318 (36%), Positives = 171/318 (53%)
Query: 746 EQPEELKGG-ALFPHQLEALNWLRKCWHKSK-NVILADEMGLGKTVSACAFISSLYCEFK 803
EQP + L P+Q LNWL HK K N+ILADEMGLGKTV A AF++ LY
Sbjct: 463 EQPSIMSENLVLKPYQKIGLNWLALL-HKHKVNMILADEMGLGKTVQAIAFLAHLYVTGD 521
Query: 804 AKLPCLVLVPLSTMPNWLAEFALWAPNLNVVEYHGCAKARAIIRQYEWHASDPDNLNKKT 863
+ P LV+VP STM NW+ EF W P++N++ Y+G + R +R Y D LNK
Sbjct: 522 SG-PHLVVVPASTMDNWIREFNQWCPSMNILLYYGSQEERKHLR-Y-------DILNKVV 572
Query: 864 SSYKFNVLLTTYEMILA---DSSHLRGVPWEVLVVDEGHRXXXXXXXXXXXXXXXXXQHR 920
+FNV++TTY ++ D S R + V DEGH + R
Sbjct: 573 ---EFNVIVTTYNCAISSAEDRSLFRRLKLNFAVFDEGHMLKNMSAIRYQHLMTLNARSR 629
Query: 921 VLLTGTPLQNNIGEMYNLLNFLQPASFPS-------LSSFEEKFNDLTTT---QKVEELK 970
+LLTGTP+QNN+ E+ +LLNF+ P F S L S + K D T +++ K
Sbjct: 630 LLLTGTPVQNNLLELMSLLNFVMPHMFSSSTSEIKRLFSSKAKSTDEQTIFEKERIAHAK 689
Query: 971 KLVAPHMLRRLKKDAMQNIPPKTERMVPVELSSIQAEYYRAMLTKNYQILRNIGKGVAQQ 1030
+++ P +LRR+K + ++ +PPK +++ ++S Q + Y +L K + ++I
Sbjct: 690 QIMKPFILRRVKSEVLKQLPPKQDKIKFCQMSKKQEQLYSDLLNK---LKKSIDATEKNS 746
Query: 1031 SMLNIVMQLRKVCNHPYL 1048
+ N++M LRK+ NHP L
Sbjct: 747 ELCNVMMHLRKMANHPLL 764
Score = 321 (118.1 bits), Expect = 2.3e-68, Sum P(4) = 2.3e-68
Identities = 67/167 (40%), Positives = 107/167 (64%)
Query: 1062 LHEMRIKASAKLTLLHSMLKVLYKEGHRVLIFSQMTKLLDILEDYLNIEFGPKTYERVDG 1121
L + I S K +L +L + K+G RV++FSQ T +LDI+E +L Y R+DG
Sbjct: 822 LEKELILDSGKFNILEKLLSDIKKKGDRVVLFSQFTMMLDIIEVFLRHH--QHRYVRLDG 879
Query: 1122 SVSVGDRQAAITRFNQDKSRFVFLLSTRSCGLGINLATADTVIIYDSDFNPHADIQAMNR 1181
+ +R I FN D F+FLLST++ GLGINL +A+ VI++D D NP+ D QA +R
Sbjct: 880 KTQISERIHLIDEFNTDMDIFIFLLSTKAGGLGINLTSANIVILHDIDCNPYNDKQAEDR 939
Query: 1182 AHRIGQSKRLLVYRLVVRASVEERILQLAKKKLMLDQ-LFVNKSGSQ 1227
HR+GQ+K + V +L+ + ++EE +L+++++KL L+Q + N +G +
Sbjct: 940 CHRVGQTKEVKVIKLIGKGTIEESMLKISQQKLRLEQDMTTNDTGDE 986
Score = 68 (29.0 bits), Expect = 2.3e-68, Sum P(4) = 2.3e-68
Identities = 31/124 (25%), Positives = 51/124 (41%)
Query: 169 LARKRSNKGKSV-LALGVK--SLEKSLDSSQVDVSCSTKPE--------NTSAGVPVEGS 217
L R R +KGK + G K S S +SQ++ ++ PE N S +G
Sbjct: 6 LERFRFDKGKKIDTEFGEKGASSRPSTPNSQLEDHVTSIPETPEAKRVNNPSLFKKDKGV 65
Query: 218 SSCPNDDDEKQLNASPTDSLADTKFHPAEEVLPHSQVTKSEQNDEVPVEKHEKSSTNGSS 277
S +D + + + S + HP EE VT ++D + V++ S+
Sbjct: 66 SFLDSDSENEDHQSKSKFSSTHQQSHPREENGTSDSVTDDSEDDYLAVKRPSASTAQVKD 125
Query: 278 GIKF 281
G K+
Sbjct: 126 GSKY 129
Score = 58 (25.5 bits), Expect = 2.5e-67, Sum P(4) = 2.5e-67
Identities = 34/126 (26%), Positives = 51/126 (40%)
Query: 184 GVKSLEKSLDSSQVDVSCSTKPENT-SAGVPVE--GSSSCPNDDDEKQLNA--SPTDSLA 238
GV L+ DS D +K +T P E G+S DD E A P+ S A
Sbjct: 64 GVSFLDS--DSENEDHQSKSKFSSTHQQSHPREENGTSDSVTDDSEDDYLAVKRPSASTA 121
Query: 239 DTKFHPAEEVLPH-SQVTKSEQNDEVPVEKHEKSSTNGSSGIKFVLAIGASERDRKRKPE 297
K + L ++ + NDE+ ++ E +ST + V+ RKRK +
Sbjct: 122 QVKDGSKYKNLQRLKEIFPKQNNDEL-LKLIESTSTLDGAVAAGVVLFNKEGSSRKRKLD 180
Query: 298 VKDEDS 303
+DS
Sbjct: 181 EVPKDS 186
Score = 49 (22.3 bits), Expect = 2.4e-66, Sum P(3) = 2.4e-66
Identities = 13/47 (27%), Positives = 21/47 (44%)
Query: 31 LSNGKEENLVTSESPRNTPSAKRRLKNEINADRSSTKKKGNDGYYYE 77
+SNGKE + +++ AK + ++ KKKG Y E
Sbjct: 278 VSNGKEFSRSNKNDNKSSAKAKANQNSNKAMAQNGVKKKGKGKKYSE 324
Score = 46 (21.3 bits), Expect = 2.3e-68, Sum P(4) = 2.3e-68
Identities = 13/41 (31%), Positives = 21/41 (51%)
Query: 515 LREDDKDSDPV--AVNGKVQDESAVSTEDLGERNDKMVVED 553
L E KDS PV +NG+ + + + + + ND + ED
Sbjct: 179 LDEVPKDSSPVHEGINGQTKKKKKI--DRVSSDNDSSLSED 217
Score = 41 (19.5 bits), Expect = 1.6e-65, Sum P(3) = 1.6e-65
Identities = 14/38 (36%), Positives = 18/38 (47%)
Query: 193 DSSQVD--VSCSTKPENTSAGVPVEGSSSCPNDDDEKQ 228
DSS V ++ TK + V + SS DD EKQ
Sbjct: 185 DSSPVHEGINGQTKKKKKIDRVSSDNDSSLSEDDWEKQ 222
Score = 41 (19.5 bits), Expect = 1.6e-65, Sum P(3) = 1.6e-65
Identities = 16/53 (30%), Positives = 23/53 (43%)
Query: 107 KRIPNGKWQCPKCTQKNDQLKPISNLDSISKRARSKIITIKSQSGVKSSGADK 159
K + NGK + + + KND N S +A +Q+GVK G K
Sbjct: 276 KEVSNGK-EFSR-SNKND------NKSSAKAKANQNSNKAMAQNGVKKKGKGK 320
>UNIPROTKB|F1RG74 [details] [associations]
symbol:SRCAP "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0043234 "protein complex" evidence=IEA] [GO:0005794
"Golgi apparatus" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR017956
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00384
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0005794
GO:GO:0043234 GO:GO:0003677 InterPro:IPR020478 PRINTS:PR00929
GO:GO:0004386 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 PROSITE:PS51204
GeneTree:ENSGT00530000063427 OMA:LGTGNPQ EMBL:FP102572
Ensembl:ENSSSCT00000008537 Uniprot:F1RG74
Length = 3230
Score = 426 (155.0 bits), Expect = 2.3e-68, Sum P(3) = 2.3e-68
Identities = 111/314 (35%), Positives = 159/314 (50%)
Query: 754 GALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVP 813
G L +Q L+WL + K N ILADEMGLGKT+ + ++ L CE P L++VP
Sbjct: 623 GQLREYQHIGLDWLVTMYEKKLNGILADEMGLGKTIQTISLLAHLACEKGNWGPHLIIVP 682
Query: 814 LSTMPNWLAEFALWAPNLNVVEYHGCAKARAIIRQYEWHASDPDNLNKKTSSYKFNVLLT 873
S M NW E W P+ ++ Y+G K R + RQ W T F+V +T
Sbjct: 683 TSVMLNWEMELKRWCPSFKILTYYGAQKERKLKRQ-GW-----------TKPNAFHVCIT 730
Query: 874 TYEMILADSSHLRGVPWEVLVVDEGHRXXXXXXXXXXXXXXXXXQHRVLLTGTPLQNNIG 933
+Y+++L D R W L++DE Q R+LLTGTPLQN++
Sbjct: 731 SYKLVLQDHQAFRRKNWRYLILDEAQNIKNFKSQRWQSLLNFNSQRRLLLTGTPLQNSLM 790
Query: 934 EMYNLLNFLQPASFPSLSSFEEKF-NDLTT----TQK-----VEELKKLVAPHMLRRLKK 983
E+++L++FL P F S F+E F N LT +Q+ V+ L K++ P +LRR+K
Sbjct: 791 ELWSLMHFLMPHVFQSHREFKEWFSNPLTGMIEGSQEYNEGLVKRLHKVLRPFLLRRVKV 850
Query: 984 DAMQNIPPKTERMVPVELSSIQAEYYRAMLTKNYQILRNIGKGVAQQSMLNIVMQLRKVC 1043
D + +P K E ++ LS Q Y + + + G S++NI+MQLRKVC
Sbjct: 851 DVEKQMPKKYEHVIRCRLSKRQRCLYDDFMAQT-TTKETLATGHFM-SVINILMQLRKVC 908
Query: 1044 NHPYLI---PGTEP 1054
NHP L P T P
Sbjct: 909 NHPNLFDPRPVTSP 922
Score = 373 (136.4 bits), Expect = 2.3e-68, Sum P(3) = 2.3e-68
Identities = 77/150 (51%), Positives = 103/150 (68%)
Query: 1072 KLTLLHSMLKVLYKEGHRVLIFSQMTKLLDILEDYLNIEFGPKTYERVDGSVSVGDRQAA 1131
KL L +L+ L EGHRVLIF+QMT++LD+LE +L + Y R+DGS V RQA
Sbjct: 2044 KLQTLAVLLRQLKAEGHRVLIFTQMTRMLDVLEQFLT--YHGHLYLRLDGSTRVEQRQAL 2101
Query: 1132 ITRFNQDKSRFVFLLSTRSCGLGINLATADTVIIYDSDFNPHADIQAMNRAHRIGQSKRL 1191
+ RFN DK F F+LSTRS G+G+NL ADTV+ YDSD+NP D QA +R HRIGQ++ +
Sbjct: 2102 MERFNADKRIFCFILSTRSGGVGVNLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDV 2161
Query: 1192 LVYRLVVRASVEERILQLAKKKLMLDQLFV 1221
+YRL+ +VEE IL+ A +K ML + +
Sbjct: 2162 HIYRLISERTVEENILKKANQKRMLGDMAI 2191
Score = 61 (26.5 bits), Expect = 2.3e-68, Sum P(3) = 2.3e-68
Identities = 22/96 (22%), Positives = 42/96 (43%)
Query: 208 TSAGVPVEGSSSCPNDDD-EKQLNASPTDSLADTKFHPAEEVLPHSQVTKSEQNDEVPVE 266
+ A P GSS +D+ E + S + A+ + P E+ S + + DE E
Sbjct: 458 SDASAPGSGSSEEEEEDEVEADSSESEPEGAAEAEEAPHEDSSSQSDSAEEQSEDEED-E 516
Query: 267 KHEKSSTNGSSGIKFVLAIGASERDRKRKPEVKDED 302
E+ T+ SS + + + E + + + ++ED
Sbjct: 517 HSEEEETSRSSESEESESEESEESQSQSQADEEEED 552
Score = 61 (26.5 bits), Expect = 3.0e-67, Sum P(4) = 3.0e-67
Identities = 18/78 (23%), Positives = 35/78 (44%)
Query: 206 ENTSAGVPVEGSSSCPNDDDEKQLNASPTDSLADTKFHPAEEVLPHSQVTKSEQNDEVPV 265
+++S E S D+ ++ S + +++ +EE SQ + E++D+ V
Sbjct: 498 DSSSQSDSAEEQSEDEEDEHSEEEETSRSSESEESESEESEESQSQSQADEEEEDDDFGV 557
Query: 266 E-----KHEKSSTNGSSG 278
E E+S +G SG
Sbjct: 558 EYLLARDEERSEADGGSG 575
Score = 53 (23.7 bits), Expect = 7.8e-67, Sum P(4) = 7.8e-67
Identities = 29/160 (18%), Positives = 65/160 (40%)
Query: 430 DRHSDDFLVSENHNKILEENLACDTDLDAEVTENLAELSPNVIRSSDEECMKNDIGVDRI 489
D ++F +E+ + E+ +A + L+ EV + EL+ + R E ++ + +
Sbjct: 397 DEDDEEFTANEDEAEDEEDTIAAEEQLEGEV-DPAVELN-ELAREGGELSVE-----ELL 449
Query: 490 QVYRRSVTKECKVTKECKGENAIDLLREDDKDSDPVAVNGKVQDESAVSTEDLGERNDKM 549
Q Y + + G + + ED+ ++D + + + E A E+ +
Sbjct: 450 QQYAGAYASDASAP----GSGSSEEEEEDEVEAD----SSESEPEGAAEAEEAPHEDSSS 501
Query: 550 VVEDADVSLRDNEGLTVSEIHITCESTDKDVDVGKKTSGS 589
+ A+ D E SE T S++ + +++ S
Sbjct: 502 QSDSAEEQSEDEED-EHSEEEETSRSSESEESESEESEES 540
Score = 47 (21.6 bits), Expect = 7.8e-67, Sum P(4) = 7.8e-67
Identities = 33/121 (27%), Positives = 43/121 (35%)
Query: 155 SGADKVSQIFGNSILARKRSNKGKSVLALGVKSLEKSLDSSQVDVSCSTKPENTSAGV-P 213
S +KV Q S L KR L V EK D + S + ++ AG P
Sbjct: 207 SNVEKVVQFKQQSRLEEKRKKALDLHLDFIVGQTEKYSDL--LSQSLNQPLASSKAGSSP 264
Query: 214 VEGSSSCPNDDDEKQLNASPTDSLADTKFHPAEEVLPHSQVTKSEQNDEVPVEKHEKSST 273
GSSS + D D F P EE E++DE +E E+
Sbjct: 265 CLGSSSAASSPPPPVSRMD--DEAIDGDFQPQEE----------EEDDEETIEVEEQQEG 312
Query: 274 N 274
N
Sbjct: 313 N 313
Score = 43 (20.2 bits), Expect = 3.0e-67, Sum P(4) = 3.0e-67
Identities = 11/38 (28%), Positives = 18/38 (47%)
Query: 28 GPGLSNGKEENLVTSESPRNTPSAKRRLKNEINADRSS 65
G G S +EE+ V ++S + P + + D SS
Sbjct: 464 GSGSSEEEEEDEVEADSSESEPEGAAEAEEAPHEDSSS 501
Score = 41 (19.5 bits), Expect = 2.9e-66, Sum P(3) = 2.9e-66
Identities = 12/55 (21%), Positives = 26/55 (47%)
Query: 250 PHSQVTKSEQNDEVPVEKHEKSSTNGSSGIKFVLAIGASERDRKRKPEVKDEDSQ 304
P S ++ E+ DEV + E S G++ + +S + + + +DE+ +
Sbjct: 463 PGSGSSEEEEEDEVEADSSE-SEPEGAAEAEEAPHEDSSSQSDSAEEQSEDEEDE 516
>UNIPROTKB|F1NS62 [details] [associations]
symbol:CHD1L "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005886 "plasma membrane"
evidence=IEA] [GO:0006338 "chromatin remodeling" evidence=IEA]
[GO:0006974 "response to DNA damage stimulus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR002464
Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690 PROSITE:PS51194
SMART:SM00490 GO:GO:0005886 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0003677 GO:GO:0006974 GO:GO:0006338
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
OMA:TCQTIAL GeneTree:ENSGT00670000098110 EMBL:AADN02037964
EMBL:AADN02037962 EMBL:AADN02037963 IPI:IPI00573125
Ensembl:ENSGALT00000024254 Uniprot:F1NS62
Length = 895
Score = 703 (252.5 bits), Expect = 2.9e-68, P = 2.9e-68
Identities = 168/413 (40%), Positives = 243/413 (58%)
Query: 860 NKKTSSYKFNVLLTTYEMILADSSHLRGVPWEVLVVDEGHRXXXXXXXXXXXXXXXXXQH 919
N K S+ F VLLTTYE+ L D++ L+ W LVVDE HR
Sbjct: 139 NLKEQSH-FRVLLTTYEICLKDAAFLKFFDWAALVVDEAHRLKNQNSLLYETLTELPVGF 197
Query: 920 RVLLTGTPLQNNIGEMYNLLNFLQPASFP--SLSSFEEKFNDLTT-TQKVEELKKLVAPH 976
+LLTGTP+QN++ E+Y+LL+F++P FP + F E + + ++ +EL L+ P
Sbjct: 198 SLLLTGTPIQNSLQELYSLLSFIEPDIFPRKQVKEFVEYYQAVEKESEPAKELHNLLQPF 257
Query: 977 MLRRLKKDAMQNIPPKTERMVPVELSSIQAEYYRAMLTKNYQILRNIGKGVAQQSML-NI 1035
+LRR+K + ++P K E ++ +S++Q +YY+A+LTK+ G ++ ML N+
Sbjct: 258 LLRRVKSEVTADLPKKVEVVLYHGMSALQRKYYKAILTKDLDAFEG---GTGRKVMLQNV 314
Query: 1036 VMQLRKVCNHPYLIPGTEPDSGSVEFLHEMRIKASAKLTLLHSMLKVLYKEGHRVLIFSQ 1095
++QLRK HPYL G EP+ + + ++AS KL LL +L LY GHRVL+FSQ
Sbjct: 315 LIQLRKCVAHPYLFNGVEPEPFEIG---DHIVEASGKLCLLDKLLSFLYDGGHRVLLFSQ 371
Query: 1096 MTKLLDILEDYLNIEFGPKTYERVDGSVSVGDRQAAITRFNQDKSRFVFLLSTRSCGLGI 1155
MTKLLDIL+DY+ ++ +YER+DGSV +R AI F Q FVFLLSTR+ G+G+
Sbjct: 372 MTKLLDILQDYM--DYRGYSYERLDGSVRGEERHLAIKNFGQQPI-FVFLLSTRAGGVGM 428
Query: 1156 NLATADTVIIYDSDFNPHADIQAMNRAHRIGQSKRLLVYRLVVRASVEERILQLAKKKLM 1215
NL ADTVI DSDFNP D+QA+ RAHRIGQ K + + RL+ R +VEE I + A KL
Sbjct: 429 NLTAADTVIFTDSDFNPQNDLQAIARAHRIGQHKPVKIIRLIGRDTVEEIIYRRAASKLR 488
Query: 1216 LDQLFVN-----------KSGSQKEVEDILRWGTEELFNDSPGINGKDMGENN 1257
L V + S ++ +IL++G ++L + S G +D+ N
Sbjct: 489 LTNAIVEGGQFALGVHKPQEASDLQLSEILKFGLDKLLS-SEGSTVQDVELEN 540
>SGD|S000002742 [details] [associations]
symbol:SWR1 "Swi2/Snf2-related ATPase structural component of
the SWR1 complex" species:4932 "Saccharomyces cerevisiae"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0000812 "Swr1 complex"
evidence=IDA] [GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0016568 "chromatin modification" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0006338 "chromatin
remodeling" evidence=IGI;IMP;IDA] [GO:0005198 "structural molecule
activity" evidence=IMP] [GO:0043486 "histone exchange"
evidence=IMP] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490
SGD:S000002742 GO:GO:0005524 GO:GO:0006355 GO:GO:0003677
GO:GO:0005198 EMBL:BK006938 GO:GO:0006351 GO:GO:0000812
GO:GO:0004386 GO:GO:0043486 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 PROSITE:PS51204 GeneTree:ENSGT00530000063427
EMBL:U51032 KO:K11681 HOGENOM:HOG000186095 OrthoDB:EOG49S9FK
PIR:S70099 RefSeq:NP_010621.1 ProteinModelPortal:Q05471 SMR:Q05471
DIP:DIP-2845N IntAct:Q05471 MINT:MINT-1165514 STRING:Q05471
PaxDb:Q05471 EnsemblFungi:YDR334W GeneID:851934 KEGG:sce:YDR334W
CYGD:YDR334w OMA:APGFKVL NextBio:970001 Genevestigator:Q05471
GermOnline:YDR334W Uniprot:Q05471
Length = 1514
Score = 436 (158.5 bits), Expect = 3.0e-68, Sum P(4) = 3.0e-68
Identities = 171/612 (27%), Positives = 282/612 (46%)
Query: 509 ENAIDLLREDDKDSDPVAVNGKVQDESAVSTED-LGERNDKMVVEDADVSLRDNEGLTVS 567
E ++ + +D + S P + + V ES +D L +D+ DADV L ++ T
Sbjct: 460 EAQLNQVNDDGRSSTPSSDSNDVLSESDDDMDDELSTSSDEDEEVDADVGLENSPAST-- 517
Query: 568 EIHITCESTD----KDVDVGKKTSGSVAKRVQEPAVTESAQVKGKAVSYEFLVKWVGKSN 623
E T ES + K+ G S + K ++ S E V +S+
Sbjct: 518 EATPTDESLNLIQLKE-KYGHFNGSSTVYDSRNKDEKFPTLDKHESSSSESSVMTGEESS 576
Query: 624 IHNSWIPESQLKVLAKRKLENYKAKYGTTVINICDERWKQPQRVISLRSSKDGTREAFVK 683
I++S ESQ + R+ ++ G + + + ++ + L S+D T V
Sbjct: 577 IYSSSENESQNE--NDRESDDKTPSVGLSALF---GKGEESDGDLDLDDSEDFT----VN 627
Query: 684 WTGLPYDECTWEKLDEPALEKYSHLTD-LFVQFERQTLKKDASEDELPRGKGDCQQSEIV 742
+ + +E +++D A + D + Q E + KD ED K +Q +V
Sbjct: 628 SSSVEGEELEKDQVDNSAAT-FERAGDFVHTQNENRDDIKDVEEDA--ETKVQEEQLSVV 684
Query: 743 ALTEQPEELKGGALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEF 802
+ P L+G L +Q + LNWL ++ N ILADEMGLGKT+ + ++ L CE
Sbjct: 685 DVPV-PSLLRGN-LRTYQKQGLNWLASLYNNHTNGILADEMGLGKTIQTISLLAYLACEK 742
Query: 803 KAKLPCLVLVPLSTMPNWLAEFALWAPNLNVVEYHGCAKARAIIRQYEWHASDPDNLNKK 862
+ P L++VP S + NW EF +AP V+ Y+G + R R+ W+ PD
Sbjct: 743 ENWGPHLIVVPTSVLLNWEMEFKRFAPGFKVLTYYGSPQQRKEKRK-GWNK--PD----- 794
Query: 863 TSSYKFNVLLTTYEMILADSSHLRGVPWEVLVVDEGHRXXXXXXXXXXXXXXXXXQHRVL 922
F+V + +Y++++ D + W+ +V+DE H Q R+L
Sbjct: 795 ----AFHVCIVSYQLVVQDQHSFKRKRWQYMVLDEAHNIKNFRSTRWQALLNFNTQRRLL 850
Query: 923 LTGTPLQNNIGEMYNLLNFLQP---------ASFPSLSSFEEKFN--------------- 958
LTGTPLQNN+ E+++LL FL P + F L +F++ F
Sbjct: 851 LTGTPLQNNLAELWSLLYFLMPQTVIDGKKVSGFADLDAFQQWFGRPVDKIIETGQNFGQ 910
Query: 959 DLTTTQKVEELKKLVAPHMLRRLKKDAMQNIPPKTERMVPVELSSIQAEYYRAMLTKNYQ 1018
D T + V +L +++ P++LRRLK D + +P K E +V +LS Q Y +++ Q
Sbjct: 911 DKETKKTVAKLHQVLRPYLLRRLKADVEKQMPAKYEHIVYCKLSKRQRFLYDDFMSRA-Q 969
Query: 1019 ILRNIGKGVAQQSMLNIVMQLRKVCNHPYLIPGTEPDSGSVEFLHEMRIKASAKLTLLHS 1078
+ G S++N +MQLRKVCNHP L P S F+ E + + K + +
Sbjct: 970 TKATLASGNFM-SIVNCLMQLRKVCNHPNLFE-VRPILTS--FVLEHCVASDYK-DVERT 1024
Query: 1079 MLKVLYKEGHRV 1090
+LK L+K+ ++V
Sbjct: 1025 LLK-LFKKNNQV 1035
Score = 349 (127.9 bits), Expect = 3.0e-68, Sum P(4) = 3.0e-68
Identities = 82/182 (45%), Positives = 110/182 (60%)
Query: 1072 KLTLLHSMLKVLYKEGHRVLIFSQMTKLLDILEDYLNIEFGPKTYERVDGSVSVGDRQAA 1131
KL L +L+ L GHR LIF+QMTK+LD+LE +LN + Y R+DG+ + DRQ
Sbjct: 1247 KLQKLAILLQQLKDNGHRALIFTQMTKVLDVLEQFLN--YHGYLYMRLDGATKIEDRQIL 1304
Query: 1132 ITRFNQDKSRFVFLLSTRSCGLGINLATADTVIIYDSDFNPHADIQAMNRAHRIGQSKRL 1191
RFN D VF+LS+RS GLGINL ADTVI YDSD+NP D Q +R HRIGQ++ +
Sbjct: 1305 TERFNTDSRITVFILSSRSGGLGINLTGADTVIFYDSDWNPAMDKQCQDRCHRIGQTRDV 1364
Query: 1192 LVYRLVVRASVEERILQLAKKKLMLDQLFVNKSG------SQKEVEDILRWGTEELFNDS 1245
+YR V ++E IL+ A +K LD + + + S+ V D+L G+E N S
Sbjct: 1365 HIYRFVSEHTIESNILKKANQKRQLDNVVIQEGDFTTDYFSKLSVRDLL--GSELPENAS 1422
Query: 1246 PG 1247
G
Sbjct: 1423 GG 1424
Score = 67 (28.6 bits), Expect = 3.0e-68, Sum P(4) = 3.0e-68
Identities = 25/104 (24%), Positives = 48/104 (46%)
Query: 463 NLAELSPNVIRSSDEECMKNDIGVDRIQVYRRSVTKECKVTKECKGENAIDLLREDDKDS 522
N+AE + ++R +EE +K G + + + K ++ E ++ + +D + S
Sbjct: 422 NMAEKAYRILRKDEEEQLKRIEGKQHLS---KMLEKSTQLL-----EAQLNQVNDDGRSS 473
Query: 523 DPVAVNGKVQDESAVSTED-LGERNDKMVVEDADVSLRDNEGLT 565
P + + V ES +D L +D+ DADV L ++ T
Sbjct: 474 TPSSDSNDVLSESDDDMDDELSTSSDEDEEVDADVGLENSPAST 517
Score = 56 (24.8 bits), Expect = 1.7e-25, Sum P(4) = 1.7e-25
Identities = 36/165 (21%), Positives = 66/165 (40%)
Query: 329 LSPGTSKLHEKQRTNNDEVSASLCEVDVGTKGLDAQRKDELAEETTDPLDKSDKAGVHVN 388
LS + ++ T++DE + DVG + A + +E+ + + +K G H N
Sbjct: 483 LSESDDDMDDELSTSSDEDEE--VDADVGLENSPASTEATPTDESLNLIQLKEKYG-HFN 539
Query: 389 EIPLCKDI------VP-FELQQVDRVLGCRVKGDDTS--SSCHISATATDDRHSDDFLVS 439
D P + + + G+++S SS + +DR SDD S
Sbjct: 540 GSSTVYDSRNKDEKFPTLDKHESSSSESSVMTGEESSIYSSSENESQNENDRESDDKTPS 599
Query: 440 ENHNKILEENLACDTDLDAEVTENLAELSPNVIRSSDEECMKNDI 484
+ + + D DLD + +E+ S +V EE K+ +
Sbjct: 600 VGLSALFGKGEESDGDLDLDDSEDFTVNSSSV---EGEELEKDQV 641
Score = 49 (22.3 bits), Expect = 3.5e-24, Sum P(5) = 3.5e-24
Identities = 45/176 (25%), Positives = 74/176 (42%)
Query: 157 ADKVSQIFGNSILARKRSNKGKSVLALGVKSLEKS---LDS--SQV-DVSCSTKPENTSA 210
A+K +I + + +GK L+ K LEKS L++ +QV D S+ P + S
Sbjct: 424 AEKAYRILRKDEEEQLKRIEGKQHLS---KMLEKSTQLLEAQLNQVNDDGRSSTPSSDSN 480
Query: 211 GVPVEGS-------SSCPNDDDEKQLNASPTDSLADTKFHPAEEVLP---------H--- 251
V E S+ ++D+E + +S A T+ P +E L H
Sbjct: 481 DVLSESDDDMDDELSTSSDEDEEVDADVGLENSPASTEATPTDESLNLIQLKEKYGHFNG 540
Query: 252 -SQVTKSEQNDE-VP-VEKHEKSSTNGSSGIKFVLAIGASERDRKRKPEVKDEDSQ 304
S V S DE P ++KHE SS+ S +I +S + + ++ D +
Sbjct: 541 SSTVYDSRNKDEKFPTLDKHESSSSESSVMTGEESSIYSSSENESQNENDRESDDK 596
Score = 43 (20.2 bits), Expect = 3.0e-68, Sum P(4) = 3.0e-68
Identities = 13/49 (26%), Positives = 26/49 (53%)
Query: 1297 ENAIARLLDRSNLQSGSTDLAEGDLENDMLG-SVKATEWNEETTEDQAE 1344
E +A+ D ++++ + + E +++ND S + NEE E+ AE
Sbjct: 1443 ERLLAQAEDEDDVKAANLAMREVEIDNDDFDESTEKKAANEEE-ENHAE 1490
Score = 38 (18.4 bits), Expect = 1.2e-26, Sum P(4) = 1.2e-26
Identities = 11/27 (40%), Positives = 14/27 (51%)
Query: 616 VKWVGKSNIHNSWIPESQLKVLAKRKL 642
VK+ S I N I Q +VL RK+
Sbjct: 1150 VKYDKSSIIDNELIKPLQTRVLDNRKI 1176
Score = 38 (18.4 bits), Expect = 3.5e-24, Sum P(5) = 3.5e-24
Identities = 19/80 (23%), Positives = 35/80 (43%)
Query: 440 ENHNKILEENLACDTDLDAEVTENLAELSPNVIRSSDEECMKNDIGVDRIQVYRRSVTK- 498
E NK+ E N + N + + + S+++ ++ VD + + + V K
Sbjct: 1073 EEVNKLRETNKQLQEEFGEASFLNFQDAN-QYFKYSNKQKLEGT--VDMLN-FLKMVNKL 1128
Query: 499 ECKVTKECKGENAIDLLRED 518
C + G+N IDLL +D
Sbjct: 1129 RCD-RRPIFGKNLIDLLTKD 1147
>UNIPROTKB|Q6ZRS2 [details] [associations]
symbol:SRCAP "Helicase SRCAP" species:9606 "Homo sapiens"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0019048 "virus-host interaction" evidence=IEA] [GO:0043234
"protein complex" evidence=IDA] [GO:0003713 "transcription
coactivator activity" evidence=TAS] [GO:0004402 "histone
acetyltransferase activity" evidence=TAS] [GO:0006357 "regulation
of transcription from RNA polymerase II promoter" evidence=TAS]
[GO:0016573 "histone acetylation" evidence=TAS] [GO:0005634
"nucleus" evidence=IDA] [GO:0005794 "Golgi apparatus" evidence=IDA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR017956
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00384
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0005794
GO:GO:0019048 GO:GO:0043234 GO:GO:0003677 InterPro:IPR020478
PRINTS:PR00929 GO:GO:0006357 GO:GO:0006351 GO:GO:0003713
GO:GO:0004386 HSSP:Q97XQ5 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:AC106886 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 PROSITE:PS51204 GO:GO:0004402
EMBL:AC093249 EMBL:AK128030 EMBL:AB002307 EMBL:BC159099
EMBL:AF143946 IPI:IPI00009101 IPI:IPI00444046 IPI:IPI00550342
RefSeq:NP_006653.2 UniGene:Hs.647334 ProteinModelPortal:Q6ZRS2
SMR:Q6ZRS2 IntAct:Q6ZRS2 MINT:MINT-123408 STRING:Q6ZRS2
PhosphoSite:Q6ZRS2 DMDM:296452947 PaxDb:Q6ZRS2 PRIDE:Q6ZRS2
DNASU:10847 Ensembl:ENST00000262518 Ensembl:ENST00000344771
Ensembl:ENST00000380361 Ensembl:ENST00000395059 GeneID:10847
KEGG:hsa:10847 UCSC:uc002dze.1 UCSC:uc002dzg.1 CTD:10847
GeneCards:GC16P030710 H-InvDB:HIX0012970 HGNC:HGNC:16974
HPA:HPA028929 MIM:136140 MIM:611421 neXtProt:NX_Q6ZRS2
Orphanet:2044 PharmGKB:PA162404706 HOGENOM:HOG000168717
InParanoid:Q6ZRS2 KO:K11661 OMA:LGTGNPQ OrthoDB:EOG4B2SWB
ChiTaRS:SRCAP GenomeRNAi:10847 NextBio:41182 ArrayExpress:Q6ZRS2
Bgee:Q6ZRS2 CleanEx:HS_SRCAP Genevestigator:Q6ZRS2 Uniprot:Q6ZRS2
Length = 3230
Score = 426 (155.0 bits), Expect = 4.4e-68, Sum P(4) = 4.4e-68
Identities = 111/314 (35%), Positives = 159/314 (50%)
Query: 754 GALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVP 813
G L +Q L+WL + K N ILADEMGLGKT+ + ++ L CE P L++VP
Sbjct: 616 GQLREYQHIGLDWLVTMYEKKLNGILADEMGLGKTIQTISLLAHLACEKGNWGPHLIIVP 675
Query: 814 LSTMPNWLAEFALWAPNLNVVEYHGCAKARAIIRQYEWHASDPDNLNKKTSSYKFNVLLT 873
S M NW E W P+ ++ Y+G K R + RQ W T F+V +T
Sbjct: 676 TSVMLNWEMELKRWCPSFKILTYYGAQKERKLKRQ-GW-----------TKPNAFHVCIT 723
Query: 874 TYEMILADSSHLRGVPWEVLVVDEGHRXXXXXXXXXXXXXXXXXQHRVLLTGTPLQNNIG 933
+Y+++L D R W L++DE Q R+LLTGTPLQN++
Sbjct: 724 SYKLVLQDHQAFRRKNWRYLILDEAQNIKNFKSQRWQSLLNFNSQRRLLLTGTPLQNSLM 783
Query: 934 EMYNLLNFLQPASFPSLSSFEEKF-NDLTT----TQK-----VEELKKLVAPHMLRRLKK 983
E+++L++FL P F S F+E F N LT +Q+ V+ L K++ P +LRR+K
Sbjct: 784 ELWSLMHFLMPHVFQSHREFKEWFSNPLTGMIEGSQEYNEGLVKRLHKVLRPFLLRRVKV 843
Query: 984 DAMQNIPPKTERMVPVELSSIQAEYYRAMLTKNYQILRNIGKGVAQQSMLNIVMQLRKVC 1043
D + +P K E ++ LS Q Y + + + G S++NI+MQLRKVC
Sbjct: 844 DVEKQMPKKYEHVIRCRLSKRQRCLYDDFMAQT-TTKETLATGHFM-SVINILMQLRKVC 901
Query: 1044 NHPYLI---PGTEP 1054
NHP L P T P
Sbjct: 902 NHPNLFDPRPVTSP 915
Score = 373 (136.4 bits), Expect = 4.4e-68, Sum P(4) = 4.4e-68
Identities = 77/150 (51%), Positives = 103/150 (68%)
Query: 1072 KLTLLHSMLKVLYKEGHRVLIFSQMTKLLDILEDYLNIEFGPKTYERVDGSVSVGDRQAA 1131
KL L +L+ L EGHRVLIF+QMT++LD+LE +L + Y R+DGS V RQA
Sbjct: 2044 KLQTLAVLLRQLKAEGHRVLIFTQMTRMLDVLEQFLT--YHGHLYLRLDGSTRVEQRQAL 2101
Query: 1132 ITRFNQDKSRFVFLLSTRSCGLGINLATADTVIIYDSDFNPHADIQAMNRAHRIGQSKRL 1191
+ RFN DK F F+LSTRS G+G+NL ADTV+ YDSD+NP D QA +R HRIGQ++ +
Sbjct: 2102 MERFNADKRIFCFILSTRSGGVGVNLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDV 2161
Query: 1192 LVYRLVVRASVEERILQLAKKKLMLDQLFV 1221
+YRL+ +VEE IL+ A +K ML + +
Sbjct: 2162 HIYRLISERTVEENILKKANQKRMLGDMAI 2191
Score = 71 (30.1 bits), Expect = 4.4e-68, Sum P(4) = 4.4e-68
Identities = 30/144 (20%), Positives = 55/144 (38%)
Query: 210 AGVPVEGSSSCPNDDDEKQLNASPTD----SLADTKFHPAEEVLPHSQVTKSEQNDEVPV 265
AG GS S D+DE +++A+ +D + + P E+ S + DE
Sbjct: 452 AGAYAPGSGSS-EDEDEDEVDANSSDCEPEGPVEAEEPPQEDSSSQSDSVEDRSEDEED- 509
Query: 266 EKHEKSSTNGSSGIKFVLAIGASERDRKRKPEVKDEDSQKKLRVDXXXXXXXXXXXXXXX 325
E E+ T+GSS + + D + + + +E+ V+
Sbjct: 510 EHSEEEETSGSSASEE--SESEESEDAQSQSQADEEEEDDDFGVEYLLARDEEQSEADAG 567
Query: 326 IGTLSPGTSKLHEKQRTNNDEVSA 349
G +PG + L K+ + +A
Sbjct: 568 SGPPTPGPTTLGPKKEITDIAAAA 591
Score = 51 (23.0 bits), Expect = 5.3e-66, Sum P(4) = 5.3e-66
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 722 KDASEDELPRGKGDCQQSEIVALTEQPEE 750
+D EDE+ DC+ V E P+E
Sbjct: 463 EDEDEDEVDANSSDCEPEGPVEAEEPPQE 491
Score = 51 (23.0 bits), Expect = 1.1e-34, Sum P(4) = 1.1e-34
Identities = 18/86 (20%), Positives = 39/86 (45%)
Query: 1283 QDKCTE-GSTKIVWDENAIA-RLLDRSNLQSGSTDLAEGDLENDMLGSVKATEWNEETTE 1340
QD+C G T+ V I+ R ++ + L+ + GD+ + G+ + ++T
Sbjct: 2149 QDRCHRIGQTRDVHIYRLISERTVEENILKKANQKRMLGDMAIEG-GNFTTAYFKQQTIR 2207
Query: 1341 DQAESPVAAVDDASAENSERKEENAV 1366
+ + P+ +S ++ +EE V
Sbjct: 2208 ELFDMPLEEPSSSSVPSAPEEEEETV 2233
Score = 49 (22.3 bits), Expect = 8.6e-66, Sum P(4) = 8.6e-66
Identities = 33/160 (20%), Positives = 62/160 (38%)
Query: 453 DTDLDAEVTENLAELSPNVIRSSDEECMKNDI--GVDRIQVYRRSVTKECKVTKECKGEN 510
D D D E T N E + EE ++ ++ ++ ++ R ++ ++ G
Sbjct: 397 DED-DEEFTANEEEAEDEEDTIAAEEQLEGEVDHAMELSELAREGELSMEELLQQYAGAY 455
Query: 511 AIDLLREDDKDSDPVAVNGK-VQDESAVSTEDLGERNDKMVVEDADVSLRDNEGLTVSEI 569
A +D+D D V N + E V E+ + + + + D E
Sbjct: 456 APGSGSSEDEDEDEVDANSSDCEPEGPVEAEEPPQEDSSSQSDSVEDRSEDEED------ 509
Query: 570 HITCESTDKDVDVGKKTSGSVAKRVQEPAVTESAQVKGKA 609
E ++++ +TSGS A E +E AQ + +A
Sbjct: 510 ----EHSEEE-----ETSGSSASEESESEESEDAQSQSQA 540
Score = 41 (19.5 bits), Expect = 4.4e-68, Sum P(4) = 4.4e-68
Identities = 7/14 (50%), Positives = 11/14 (78%)
Query: 1046 PYLIPGTEPDSGSV 1059
P L+P +P+SGS+
Sbjct: 1069 PVLLPPLQPNSGSL 1082
>DICTYBASE|DDB_G0281441 [details] [associations]
symbol:ercc6 "DNA excision repair protein 6"
species:44689 "Dictyostelium discoideum" [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=ISS] [GO:0006289 "nucleotide-excision repair"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0281441 GO:GO:0005524
GO:GO:0005634 GenomeReviews:CM000152_GR GO:GO:0003677
EMBL:AAFI02000041 GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006289 GO:GO:0008094 KO:K10841
RefSeq:XP_640679.1 ProteinModelPortal:Q54TY2 STRING:Q54TY2
EnsemblProtists:DDB0232361 GeneID:8623063 KEGG:ddi:DDB_G0281441
InParanoid:Q54TY2 OMA:NIHKERW ProtClustDB:CLSZ2736745
Uniprot:Q54TY2
Length = 1655
Score = 700 (251.5 bits), Expect = 1.1e-67, Sum P(5) = 1.1e-67
Identities = 217/805 (26%), Positives = 385/805 (47%)
Query: 510 NAIDLLREDDKDSDPVAVNGKVQDESAVSTEDLGERNDKMVVED-ADVSLRDNEGLTVSE 568
N ++L + +K+ D + + +D + +D ED ++ + DNE E
Sbjct: 539 NRLNLTTDTNKEKDDDNEKEENDENENEENDDDDDEDDDDDQEDYKEIEIEDNEDEDEDE 598
Query: 569 IH--ITCESTDKDVDVGKKT-SGSVAKRVQE-----PAVTESAQVKGKAVSYEFLVKWVG 620
I T + K + K T S + KR Q+ E + + + Y+ +
Sbjct: 599 IEEEFTLKKNKKSI---KSTISNNKRKRKQDVDDDDDNDDEDEDDEDEKIDYDDRIP-KE 654
Query: 621 KSNIHNS-WIPESQLKVLAKRKLENYKAKYGTTVINICDERW-----KQPQRVISLRSSK 674
NIH W + KV KR LE K K + + ++ K ++ ++
Sbjct: 655 LLNIHKERWTDDGNEKVYQKRLLEWKKKKIRDRIKKMDQKKRLEVLEKYTDNLMKNNNNN 714
Query: 675 DGTR------EAFVKWTGLPYDE-CTWEKLDEPALEKYSHLTDLFVQFERQTLKKDASED 727
+ E + L DE EKLDE A+ ++ ++ FE + +K+A E+
Sbjct: 715 NNNNNEENEDELYPSQYDLAEDEYLNNEKLDEEAVLNKNNNNEIEKIFEEEE-EKEAEEE 773
Query: 728 ELPRGKGDCQQSEIVALTEQPEELKGGALFPHQLEALNWLRKCWHKSKNVILADEMGLGK 787
+ GD EI + P ++ LF +Q+ + WL + + I+ DEMGLGK
Sbjct: 774 II----GD--DYEIDENFKIPFDIYKN-LFEYQVTCVRWLYELHCQETGGIVGDEMGLGK 826
Query: 788 TVSACAFISSLYCEFKAKLPCLVLVPLSTMPNWLAEFALWAPNLNVVEYHGCAKARAIIR 847
TV +F++SL+ + P L++ P + + NW+ EF W P V +H
Sbjct: 827 TVQIVSFLASLHYSRRLGGPALIVAPATLLSNWIKEFHKWWPPFRVGLFHSSGSGGG--- 883
Query: 848 QYEWHASDPDNLNKKTSSYKFNVLLTTYEMILADSSHLRGVPWEVLVVDEGHRXXXXXXX 907
SD +++ KK + K ++LLTT++ I + L WE +++DEGH+
Sbjct: 884 --GNDGSDKEDIVKKIAE-KGHILLTTFDSIRINQEILLKYHWEYVILDEGHKIRNPDAE 940
Query: 908 XXXXXXXXXXQHRVLLTGTPLQNNIGEMYNLLNFLQPASFPSLSSFEEKFN------DLT 961
HRV+L+G+P+QN + E+++L +F+ P +L F+ +F+
Sbjct: 941 ITLSCKQLQTPHRVILSGSPIQNKLTELWSLFDFVFPGRLGTLPIFKSQFSLPISVGGFA 1000
Query: 962 TTQKVE---------ELKKLVAPHMLRRLKKDAMQNIPPKTERMVPVELSSIQAEYYRAM 1012
++ L+ L++P+MLRR+K D ++++P K E+++ L+ Q + Y
Sbjct: 1001 NASPIQVQAAYKCAVALRDLISPYMLRRVKSDVLKSLPSKNEQVLMCPLTPFQEKLYLEF 1060
Query: 1013 LTKNYQILRNIGKGVAQQSMLNIVMQLRKVCNHPYLIPGTEPDSGSVEFLHEM-RIKASA 1071
L N ++++ G +++ L + L+K+CNHP ++ D+ + H+ I+ SA
Sbjct: 1061 LDSND--IKSVLDG--RRNALYGIDILKKICNHPDIL---HMDASDEDRPHDYGNIERSA 1113
Query: 1072 KLTLLHSMLKVLYKEGHRVLIFSQMTKLLDILEDYLNIEFGPKTYERVDGSVSVGDRQAA 1131
KL ++ ++L + +K+G +VL+F Q ++LDI+E Y+ + Y R+DG+ S+ RQ
Sbjct: 1114 KLKVVETILPLWFKQGDKVLLFCQTRQMLDIVEQYIR-DSTQFNYLRMDGTTSIRQRQCL 1172
Query: 1132 ITRFNQDKSRFVFLLSTRSCGLGINLATADTVIIYDSDFNPHADIQAMNRAHRIGQSKRL 1191
+ +FN D S F+FLL+T+ GLG+NL A+ VI++D D+NP D+QA R +RIGQ K +
Sbjct: 1173 VEQFNIDPSLFIFLLTTKVGGLGLNLTGANRVILFDPDWNPSTDMQARERVYRIGQKKAV 1232
Query: 1192 LVYRLVVRASVEERILQLAKKKLMLDQLFVNKSGSQKEVEDILRWGTEELFNDSPGINGK 1251
+YRL+ ++EE+I K L + K QK + ++LF + G
Sbjct: 1233 TIYRLITLGTIEEKIYHRQIYKQFLTNKIL-KDPRQKRFFKSKHF--KDLFTYTKNKKGS 1289
Query: 1252 DMGE-----NNTSIEEAVRDLEQKH 1271
+ G+ N+ + E + D K+
Sbjct: 1290 ETGDIFSGSNSEILPEHMNDKNDKN 1314
Score = 62 (26.9 bits), Expect = 1.1e-67, Sum P(5) = 1.1e-67
Identities = 53/278 (19%), Positives = 112/278 (40%)
Query: 254 VTKS-EQNDEVPV-EKHEKSSTNGSSGIK-FVLAIGASER--DRKRKPEVKDEDSQKKLR 308
+TK+ +Q E EK++ GS G K F+ I + D K+K + +++ +K+ +
Sbjct: 370 ITKTLDQEKETEQNEKNQGGGGGGSGGSKIFLKPIKKTTNRFDAKKKKVLTEKEKKKQKK 429
Query: 309 VDXXXXXXXXXXXXXXXIGTLSPGTSKLHEKQRTNNDEVSASLCEVDVGTKGLDAQRKDE 368
+ + S L+ + +ND+ + + E + +D ++++
Sbjct: 430 MKKYSIQRDPPKKLQEFYDDFNDMES-LNISE-DDNDDYNNNNNEEENEEDEIDIEKEEN 487
Query: 369 LAEETTDPLDKSDKAGVHVNEIPLCKDIVPFELQQVDRVLGCRVK--GDDTSSSCHISAT 426
+E+ P S K+ + +I K + D +L + G + + ++ T
Sbjct: 488 --DESPPP-KSSKKSNSKLKKISTPKSKSKPKNNNDDDLLNLDISLSGRIRTPTNRLNLT 544
Query: 427 A-TDDRHSDDFLVSENHNKILEENLACDTDLDAEVTENLAELSPNVIRSSDEECMKNDIG 485
T+ DD EN EEN D + D + E+ E+ DE+ ++ +
Sbjct: 545 TDTNKEKDDDNEKEENDENENEENDDDDDEDDDDDQEDYKEIEIEDNEDEDEDEIEEEFT 604
Query: 486 VDRIQVYRRSVTKECKVTKECKGENAIDLLREDDKDSD 523
+ + ++S+ K + ++ D DD+D D
Sbjct: 605 LKK---NKKSIKSTISNNKRKRKQDVDDDDDNDDEDED 639
Score = 61 (26.5 bits), Expect = 1.1e-67, Sum P(5) = 1.1e-67
Identities = 36/154 (23%), Positives = 61/154 (39%)
Query: 1185 IGQSKRLLVYRLVVRASVEERILQLAKKKLMLDQ-----LFV---NKSGSQKEVEDILRW 1236
+G + + +R + + + +IL+ ++K LF NK GS E DI
Sbjct: 1240 LGTIEEKIYHRQIYKQFLTNKILKDPRQKRFFKSKHFKDLFTYTKNKKGS--ETGDIFSG 1297
Query: 1237 GTEELF----NDSPGING-KDMGENNTSIEEAVRDLEQKHRKRGGGLGDVYQDKCTEGST 1291
E+ ND N K+ NN SI + L K +K G D+ S
Sbjct: 1298 SNSEILPEHMNDKNDKNSIKNKNNNNNSILNSSSPLIPKKKKDDGDNNYSSSDESDSKSK 1357
Query: 1292 KIVWDENAIARLLDRSNLQSGSTDL-AEGDLEND 1324
K V + R++ +N D+ A+ D++ +
Sbjct: 1358 KRVRGNHG-KRIIGNNNNNKIKNDVDADADIDGN 1390
Score = 55 (24.4 bits), Expect = 5.8e-67, Sum P(5) = 5.8e-67
Identities = 30/124 (24%), Positives = 49/124 (39%)
Query: 224 DDEKQLNASPTDSLADTKFHPAEEVLPHSQVT-KSEQNDEVPVEKHEKSSTNGSSGIKFV 282
+D + LN S D+ D + EE ++ + E+NDE P K K S +S +K +
Sbjct: 451 NDMESLNISEDDN-DDYNNNNNEEENEEDEIDIEKEENDESPPPKSSKKS---NSKLKKI 506
Query: 283 LAIGASERDRKRKPEVKDEDSQKKLRVDXXXXXXXXXXXXXXXIGTLSPGTSKLHEKQRT 342
S K KP+ ++D L +D + T K + ++
Sbjct: 507 -----STPKSKSKPKNNNDDDL--LNLDISLSGRIRTPTNRLNL-TTDTNKEKDDDNEKE 558
Query: 343 NNDE 346
NDE
Sbjct: 559 ENDE 562
Score = 52 (23.4 bits), Expect = 1.1e-67, Sum P(5) = 1.1e-67
Identities = 14/45 (31%), Positives = 23/45 (51%)
Query: 32 SNGKEENLVTSESPRNT-PSAKRRLKNEINADRSSTKKKGNDGYY 75
+N N T+ P++ P+ R K+ A +SS + KGN Y+
Sbjct: 41 NNNNNNNNTTTNKPKDDKPNFLR--KSNPTASQSSLQSKGNQLYH 83
Score = 52 (23.4 bits), Expect = 2.8e-67, Sum P(5) = 2.8e-67
Identities = 18/82 (21%), Positives = 41/82 (50%)
Query: 509 ENAIDLLREDDKDSDPVAV----NGKVQDESAVSTEDLGERNDKMVVEDADVSLRDNEGL 564
E+ ID+ +E++ +S P N K++ S ++ + N+ + + D+SL
Sbjct: 477 EDEIDIEKEENDESPPPKSSKKSNSKLKKISTPKSKSKPKNNNDDDLLNLDISLSGRIRT 536
Query: 565 TVSEIHITCEST-DKDVDVGKK 585
+ +++T ++ +KD D K+
Sbjct: 537 PTNRLNLTTDTNKEKDDDNEKE 558
Score = 50 (22.7 bits), Expect = 9.1e-66, Sum P(3) = 9.1e-66
Identities = 13/38 (34%), Positives = 23/38 (60%)
Query: 35 KEENLVTSESPRNTPSAKRRLKNEINADRSSTKKKGND 72
KEEN S P+++ + +LK +I+ +S +K K N+
Sbjct: 484 KEEN-DESPPPKSSKKSNSKLK-KISTPKSKSKPKNNN 519
Score = 49 (22.3 bits), Expect = 2.8e-67, Sum P(5) = 2.8e-67
Identities = 31/120 (25%), Positives = 51/120 (42%)
Query: 265 VEKHEKSSTNGSSGIKFVLAIGASER--DRKRKPEVKDEDSQKK----LRV----DXXXX 314
++ EKS+ N IK + +R D+KRKP+ + + K L + D
Sbjct: 271 LKSQEKSTQNKIIEIKEKIKTDREKRINDQKRKPDGSNSSGENKSIGELPLPSLFDKAFG 330
Query: 315 XXXXXXXXXXXI--GTLSPGTSKLHEKQRTNNDEVSASLCEVDVGTKGLDAQRKDELAEE 372
I G ++P S++H K TN + VD+ TK LD +++ E E+
Sbjct: 331 FSTTESERDRLIRTGKITP-FSEMHSK--TNKKTIVLDDV-VDI-TKTLDQEKETEQNEK 385
Score = 43 (20.2 bits), Expect = 1.1e-67, Sum P(5) = 1.1e-67
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 127 KPISNLDSISKRARSKIITIKSQ 149
K +S+L S K ++KII IK +
Sbjct: 266 KKLSDLKSQEKSTQNKIIEIKEK 288
Score = 40 (19.1 bits), Expect = 2.4e-66, Sum P(5) = 2.4e-66
Identities = 9/27 (33%), Positives = 13/27 (48%)
Query: 429 DDRHSDDFLVSENHNKILEENLACDTD 455
D ++ FL N +I E+N D D
Sbjct: 226 DISEAEQFLFKNNEREINEKNKDIDKD 252
>SGD|S000001934 [details] [associations]
symbol:IRC5 "Putative ATPase containing the DEAD/H
helicase-related sequence motif" species:4932 "Saccharomyces
cerevisiae" [GO:0006312 "mitotic recombination" evidence=IMP]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0003674
"molecular_function" evidence=ND] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 SGD:S000001934 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 EMBL:D50617 EMBL:BK006940 GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006312 GeneTree:ENSGT00550000075106 PIR:S56293
RefSeq:NP_116696.2 ProteinModelPortal:P43610 SMR:P43610
DIP:DIP-5300N MINT:MINT-543614 STRING:P43610 PaxDb:P43610
PRIDE:P43610 EnsemblFungi:YFR038W GeneID:850599 KEGG:sce:YFR038W
CYGD:YFR038w OMA:FEIFNKW OrthoDB:EOG40S3Q6 NextBio:966463
Genevestigator:P43610 GermOnline:YFR038W Uniprot:P43610
Length = 853
Score = 392 (143.0 bits), Expect = 3.9e-67, Sum P(3) = 3.9e-67
Identities = 97/267 (36%), Positives = 143/267 (53%)
Query: 743 ALTEQPEELKGGALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEF 802
A +QP LK L P+QLE LNWL + N ILADEMGLGKTV + A ++ +Y E
Sbjct: 209 AAIKQPRLLKNCILKPYQLEGLNWLITLYENGLNGILADEMGLGKTVQSIALLAFIY-EM 267
Query: 803 KAKLPCLVLVPLSTMPNWLAEFALWAPNLNVVEYHGCAKARAIIRQYEWHASDPDNLNKK 862
K P LV PLST+ NW+ EFA +AP+L V++Y+G Y+ ++ N K+
Sbjct: 268 DTKGPFLVTAPLSTLDNWMNEFAKFAPDLPVLKYYGT-------NGYKERSAKLKNFFKQ 320
Query: 863 TSSYKFNVLLTTYEMILADSSHLRGVPWEVLVVDEGHRXXXXXXXXXXXXXXXXXQHRVL 922
+++T+YE+IL D+ + W+ L+VDEGHR +R+L
Sbjct: 321 HGGT--GIVITSYEIILRDTDLIMSQNWKFLIVDEGHRLKNINCRLIKELKKINTSNRLL 378
Query: 923 LTGTPLQNNIGEMYNLLNFLQPASFPSLSSFEEKFN----DLTTTQKVEELKKLVAPHML 978
LTGTPLQNN+ E+++LLNF+ P F F + F+ +L + E L KL+ +
Sbjct: 379 LTGTPLQNNLAELWSLLNFIMPDIFADFEIFNKWFDFDSLNLGSGSNSEALNKLINDELQ 438
Query: 979 RRLKKDAMQNIPP-KTERMVPVELSSI 1004
+ L + + P R+ V L++I
Sbjct: 439 KNLISNLHTILKPFLLRRLKKVVLANI 465
Score = 383 (139.9 bits), Expect = 3.9e-67, Sum P(3) = 3.9e-67
Identities = 95/273 (34%), Positives = 156/273 (57%)
Query: 1021 RNIGKGVAQQSMLNIVMQLRKVCNHPYLI--PGTEPDSGSVEFLHEMRIKASAKLTLLHS 1078
+N+ ++ + + N++MQLR++ + +L P P+ ++E L +K S KL +L
Sbjct: 555 KNLQMEISNKKLQNMMMQLRQIIDSTFLFYFPYLHPEDLTLETL----LKTSGKLQILQK 610
Query: 1079 MLKVLYKEGHRVLIFSQMTKLLDILEDYLNIEFGPKTYERVDGSVSVGDRQAAITRFNQD 1138
++ L EGH+VLI+SQ +LD++ED+ ++ T+ R+DGSV+ R+ + +FN
Sbjct: 611 LIPPLISEGHKVLIYSQFVNMLDLIEDWCDLN-SFATF-RIDGSVNNETRKDQLEKFNSS 668
Query: 1139 KSRF-VFLLSTRSCGLGINLATADTVIIYDSDFNPHADIQAMNRAHRIGQSKRLLVYRLV 1197
K + +FLLSTR+ GLGINL ADTV+++DSD+NP D+QAM+R HRIGQ ++VYRL
Sbjct: 669 KDKHNIFLLSTRAAGLGINLVGADTVVLFDSDWNPQVDLQAMDRCHRIGQESPVIVYRLC 728
Query: 1198 VRASVEERILQLAKKKLMLDQLFVNKSGSQKEVEDI-LRWGTEELFNDSPGINGKDMGEN 1256
++E IL A K L+++ + + G ++ + L G+ N + G+N N
Sbjct: 729 CDNTIEHVILTRAANKRNLERMVI-QMGKFNNLKKLALNEGSFLKANKA-GVNVT----N 782
Query: 1257 NTSIEEAVRDLEQKHRKRGGGLGDVYQDKCTEG 1289
++E L G G ++K TEG
Sbjct: 783 KDLVQELSMLLMSDESNIGFENGGQKENKATEG 815
Score = 95 (38.5 bits), Expect = 1.6e-35, Sum P(4) = 1.6e-35
Identities = 21/57 (36%), Positives = 33/57 (57%)
Query: 958 NDLTTTQKVEELKKLVAPHMLRRLKKDAMQNI-PPKTERMVPVELSSIQAEYYRAML 1013
ND + L ++ P +LRRLKK + NI PPK E ++ ++S Q ++Y+A L
Sbjct: 434 NDELQKNLISNLHTILKPFLLRRLKKVVLANILPPKREYIINCPMTSAQEKFYKAGL 490
Score = 48 (22.0 bits), Expect = 3.9e-67, Sum P(3) = 3.9e-67
Identities = 16/63 (25%), Positives = 31/63 (49%)
Query: 513 DLLREDDKDSDPVAVNGKVQDESAVSTED----LGERNDKMVVEDADVSLRD-NEGLTVS 567
D+ + + DSD AV +V D+ A T+ L + +M + + L+ NE + S
Sbjct: 81 DIQLDSEDDSDTEAVQAQVVDKLAKDTKSEQKSLDDELSEMDTKTVSLKLKKLNEFVRQS 140
Query: 568 EIH 570
+++
Sbjct: 141 QVY 143
Score = 46 (21.3 bits), Expect = 2.2e-66, Sum P(4) = 2.2e-66
Identities = 19/72 (26%), Positives = 39/72 (54%)
Query: 413 KGDDTSSSCHISATATDDRHSDDFLVSENHNKILEENLACDTD-LDAEVTENLAELSPNV 471
KGD+ ++ + DD HSD+ + ++ E++ DT+ + A+V + LA+ + +
Sbjct: 62 KGDNDTAPIWLQ----DDVHSDEDIQLDS-----EDD--SDTEAVQAQVVDKLAKDTKSE 110
Query: 472 IRSSDEECMKND 483
+S D+E + D
Sbjct: 111 QKSLDDELSEMD 122
Score = 43 (20.2 bits), Expect = 4.5e-66, Sum P(4) = 4.5e-66
Identities = 11/35 (31%), Positives = 16/35 (45%)
Query: 237 LADTKFHPAEEVLPHSQVTKSEQNDEVPVEKHEKS 271
+ADT H + EV + S +DE K K+
Sbjct: 147 IADTLLHRSNEVANANTKDNSNSDDEEHSSKKRKT 181
Score = 40 (19.1 bits), Expect = 2.2e-66, Sum P(4) = 2.2e-66
Identities = 8/34 (23%), Positives = 18/34 (52%)
Query: 504 KECKGENAIDLLREDDKDSDPVAVNGKVQDESAV 537
++ K ++ D ++ K+ D NG D++A+
Sbjct: 179 RKTKKKSITDFFKKQKKNEDTTTQNG-APDDAAI 211
Score = 40 (19.1 bits), Expect = 9.3e-66, Sum P(4) = 9.3e-66
Identities = 12/41 (29%), Positives = 22/41 (53%)
Query: 333 TSKLHEKQRTNNDEVSASLCEVDVGTKGLDAQRKDELAEET 373
T+ + + ++DE E D T+ + AQ D+LA++T
Sbjct: 67 TAPIWLQDDVHSDEDIQLDSEDDSDTEAVQAQVVDKLAKDT 107
>CGD|CAL0001763 [details] [associations]
symbol:orf19.1871 species:5476 "Candida albicans" [GO:0000812
"Swr1 complex" evidence=IEA] [GO:0005198 "structural molecule
activity" evidence=IEA] [GO:0043486 "histone exchange"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490
CGD:CAL0001763 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0003677 GO:GO:0006351 GO:GO:0016568 GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 PROSITE:PS51204
EMBL:AACQ01000133 EMBL:AACQ01000132 RefSeq:XP_713128.1
RefSeq:XP_713174.1 ProteinModelPortal:Q59U81 STRING:Q59U81
PRIDE:Q59U81 GeneID:3645174 GeneID:3645220 KEGG:cal:CaO19.1871
KEGG:cal:CaO19.9427 KO:K11681 Uniprot:Q59U81
Length = 1641
Score = 356 (130.4 bits), Expect = 6.9e-67, Sum P(5) = 6.9e-67
Identities = 78/174 (44%), Positives = 111/174 (63%)
Query: 1072 KLTLLHSMLKVLYKEGHRVLIFSQMTKLLDILEDYLNIEFGPKTYERVDGSVSVGDRQAA 1131
KL L ++L+ L +GHR LIF+QMTK+LDILE +LNI G + Y R+DG+ + DRQ
Sbjct: 1367 KLQKLATLLQELTSQGHRALIFTQMTKVLDILEQFLNIH-GYR-YMRLDGATKIEDRQLL 1424
Query: 1132 ITRFNQDKSRFVFLLSTRSCGLGINLATADTVIIYDSDFNPHADIQAMNRAHRIGQSKRL 1191
+FN+D VF+LSTRS GLGINL ADTVI YDSD+NP D Q +R HRIGQ + +
Sbjct: 1425 TEKFNRDPKIPVFILSTRSGGLGINLTGADTVIFYDSDWNPAMDKQCQDRCHRIGQVRDV 1484
Query: 1192 LVYRLVVRASVEERILQLAKKKLMLDQLFVNKSGSQKEVEDILRWGTEELFNDS 1245
+YR V ++E I++ A +K LD + + + + + ++ +L +DS
Sbjct: 1485 HIYRFVSEYTIESNIIKKANQKRQLDNVVIQEG--EFTTDYFGKFSVRDLVSDS 1536
Score = 330 (121.2 bits), Expect = 6.9e-67, Sum P(5) = 6.9e-67
Identities = 77/218 (35%), Positives = 118/218 (54%)
Query: 748 PEELKGGALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLP 807
P L+G L P+Q + LNWL ++ + N ILADEMGLGKT+ + ++ L CE P
Sbjct: 816 PSLLRG-TLRPYQKQGLNWLASLYNNNTNGILADEMGLGKTIQTISLLAYLACEHHKWGP 874
Query: 808 CLVLVPLSTMPNWLAEFALWAPNLNVVEYHGCAKARAIIRQYEWHASDPDNLNKKTSSYK 867
L++VP S M NW EF +AP V+ Y+G + RA R+ W+ PD
Sbjct: 875 HLIIVPTSVMLNWEMEFKKFAPGFKVLTYYGSPQQRAQKRK-GWNK--PD---------A 922
Query: 868 FNVLLTTYEMILADSSHLRGVPWEVLVVDEGHRXXXXXXXXXXXXXXXXXQHRVLLTGTP 927
F+V +T+Y++++ D + W +++DE H ++R+LLTGTP
Sbjct: 923 FHVCITSYQLVVQDQQSFKRRRWTYMILDEAHNIKNFRSTRWRALLNFNTENRLLLTGTP 982
Query: 928 LQNNIGEMYNLLNFLQPASFPSLSSFEEKFNDLTTTQK 965
LQNN+ E+++LL FL P+S + + E F +L Q+
Sbjct: 983 LQNNLMELWSLLYFLMPSSKVN-QAMPEGFANLDDFQQ 1019
Score = 136 (52.9 bits), Expect = 6.9e-67, Sum P(5) = 6.9e-67
Identities = 34/90 (37%), Positives = 50/90 (55%)
Query: 959 DLTTTQKVEELKKLVAPHMLRRLKKDAMQNIPPKTERMVPVELSSIQAEYYRAMLTKNYQ 1018
D T V L +++ P++LRRLKKD + +P K E +V LS Q Y +++ +
Sbjct: 1051 DEETRNTVARLHQVLRPYLLRRLKKDVEKQMPGKYEHIVYCRLSKRQRFLYDDFMSRA-K 1109
Query: 1019 ILRNIGKGVAQQSMLNIVMQLRKVCNHPYL 1048
+ G S++N +MQLRKVCNHP L
Sbjct: 1110 TKETLASGNFL-SIINCLMQLRKVCNHPDL 1138
Score = 65 (27.9 bits), Expect = 6.9e-67, Sum P(5) = 6.9e-67
Identities = 34/163 (20%), Positives = 67/163 (41%)
Query: 333 TSKLHEKQRTNNDEVSASLCEVDVGTKGLDA-QRKDELAEETTDPLDKSDKAGVHVNEIP 391
+ K E + ++ D S+ + DV T+GL + + DE+A+ T + S + + ++
Sbjct: 631 SDKERESETSSEDAESSDDDDTDV-TRGLASLYQNDEVADFATTTFEYSAEEKKLIEDLN 689
Query: 392 LCKDIVPFELQQVDRV--LGCRVKGDDTSSSCHISATATDD--RHSDDFLVSENHNKILE 447
D L D V + +++SS + + + R S+ + +
Sbjct: 690 QESDSRMNSLLDSDSVSSISDSESSEESSSDTEMDQSTVSEPPRSSETGSNTGLASLFTN 749
Query: 448 ENLACDTDLDAEVTENLAELSPNVIRSSDEECMKNDIG-VDRI 489
+ D + D ++ N S + SSD E N G +D+I
Sbjct: 750 GTIVSDEEDDVSISSNFENESDESMNSSDRELEVNGNGKIDKI 792
Score = 57 (25.1 bits), Expect = 5.9e-66, Sum P(5) = 5.9e-66
Identities = 48/257 (18%), Positives = 105/257 (40%)
Query: 362 DAQRKDELAEETTDPLDKSDKAGVHVNEIPLCKDIVPFELQQVDRVLGCRVKGDDTSSSC 421
+ +R + A+ET+ +K K E L IV F L V+ + + + S
Sbjct: 29 NGKRTSQHAQETSTASNKKRKVSTQSKEDKLSDIIVDFNLA-VNELYQLK-EYKSIISWD 86
Query: 422 HISATATDDR----HSDDFLVSENHNKILEENLACDTDLDA-EVTENLAELSPNVIRSSD 476
I ++ +DR ++F+ + ++ + ++ + ++++D+ + +L+ D
Sbjct: 87 PIENSSANDRGIKAEFEEFVKNNDYRLVWDKEIENNSNIDSLPLRFQKKKLAEQNKLLDD 146
Query: 477 EECMKNDIGVDRIQVYRRSVTKECKVTKECKGENAIDLLREDDKDSDPVAV-----NGKV 531
+ ++ ++ + ++ S+ K E K E+ ++ +K + N K
Sbjct: 147 KFSIRQNV-LASSKMLEESLVN--KTRDEVKIESTFKAIQSQEKAGSKLKTPSQTSNAKT 203
Query: 532 Q-DESAVSTEDLGERND--KMVVEDADVSLRDNEGLTVSEIHITCESTDKDVDVGKKTSG 588
+S +T G N K +ED D + ++ +V EI ES D + +
Sbjct: 204 NIRKSGSTTPKRGNENGSRKQALEDQDEIIELSDDSSVVEI----ESDLSDAETHYRIK- 258
Query: 589 SVAKRVQEPAVTESAQV 605
+ K V P VT + +
Sbjct: 259 CIKKTVPPPLVTHPSHI 275
Score = 56 (24.8 bits), Expect = 5.9e-66, Sum P(5) = 5.9e-66
Identities = 66/324 (20%), Positives = 122/324 (37%)
Query: 157 ADKVSQIFGNSILARKRSNKGKSVLALGVKSLEKSLDSSQVDVSCSTKPENTSAGVPVEG 216
A KV QI N + KG+ L+ + LE S + ++ S +P V E
Sbjct: 501 AQKVYQIIQNEKEEELKKIKGRQHLS---EMLEHSTQLLEAQLTSSREPT-----VEAES 552
Query: 217 SSSCPNDDDEKQLNASPTDSLADTKFHPAEEVLPHSQVTKSEQ-------NDE----VPV 265
+ DD N + +D+ + ++ EE Q+ +++ NDE + V
Sbjct: 553 DDNSTTFDD----NTNDSDNFSSSEEEENEEDNTQQQINGNKKYDVNGKSNDENDMSLSV 608
Query: 266 EKHEKSSTNGSSGIKFVLAIGASERDRKRKPEVKDEDSQKKLRVDXXXXXXXXXXXXXXX 325
E+ K + + ++ L+ + D++R+ E ED++ D
Sbjct: 609 EELRKKYADLETSVE-PLSSNVTS-DKERESETSSEDAESSDDDDTDVTRGLASLYQNDE 666
Query: 326 IGTLSPGT-------SKLHEKQRTNNDEVSASLCEVDVGTKGLDAQRKDELAEETTDPLD 378
+ + T KL E +D SL + D + D++ +E + +T +D
Sbjct: 667 VADFATTTFEYSAEEKKLIEDLNQESDSRMNSLLDSDSVSSISDSESSEESSSDTE--MD 724
Query: 379 KSDKAGVHVNEIPLCKDIVPFELQQVDRVLGCRVKG--DDTSSSCHISATATDDRHSDDF 436
+S V+E P + G V DD S S + + + +S D
Sbjct: 725 QST-----VSEPPRSSETGSNTGLASLFTNGTIVSDEEDDVSISSNFENESDESMNSSDR 779
Query: 437 LVSENHNKILEENLACDTDLDAEV 460
+ N N +++ + D D D+ V
Sbjct: 780 ELEVNGNGKIDKIASTDED-DSNV 802
Score = 55 (24.4 bits), Expect = 7.5e-66, Sum P(5) = 7.5e-66
Identities = 56/263 (21%), Positives = 105/263 (39%)
Query: 339 KQRTNNDEVSASLCEVDVGTKGLDAQRKDELAEETTDPLDKSDKAGVHVNEIPLCKDIVP 398
K+R N + + L V + AQ+ ++ + + K K H++E+ L
Sbjct: 477 KEREQNLKKMSRLTMQAVKKRWNQAQKVYQIIQNEKEEELKKIKGRQHLSEM-LEHSTQL 535
Query: 399 FELQQVD-RVLGCRVKGDDTSSSCHISATATDDRHSDDFLVSENHNKILEENLACDTDLD 457
E Q R + DD S++ + T+D SD+F SE E+N + +
Sbjct: 536 LEAQLTSSREPTVEAESDDNSTTFDDN---TND--SDNFSSSEEEENE-EDNTQQQINGN 589
Query: 458 AEVTENLAELSPNVIRSSDEECMKNDIGVDR-IQVYRRSVTKECKVTKECKGENAIDLLR 516
+ N N + S EE K ++ ++ +VT + + E E+A
Sbjct: 590 KKYDVNGKSNDENDMSLSVEELRKKYADLETSVEPLSSNVTSDKERESETSSEDAES--- 646
Query: 517 EDDKDSD------PVAVNGKVQDESAVSTEDLGERNDKMVVEDADV-------SLRDNEG 563
DD D+D + N +V D + + E E +K ++ED + SL D++
Sbjct: 647 SDDDDTDVTRGLASLYQNDEVADFATTTFEYSAE--EKKLIEDLNQESDSRMNSLLDSDS 704
Query: 564 LTVSEIHITCESTDKDVDVGKKT 586
++ + E + D ++ + T
Sbjct: 705 VSSISDSESSEESSSDTEMDQST 727
Score = 51 (23.0 bits), Expect = 1.9e-65, Sum P(5) = 1.9e-65
Identities = 40/185 (21%), Positives = 69/185 (37%)
Query: 362 DAQRKDELAEETTDPLDKSDK------AGVHVNEIPLCKDIVPFELQQVDRVL--GCRVK 413
D +R+ E + E + D D A ++ N+ FE ++ L +
Sbjct: 632 DKERESETSSEDAESSDDDDTDVTRGLASLYQNDEVADFATTTFEYSAEEKKLIEDLNQE 691
Query: 414 GDDTSSSCHISATATDDRHSDDFLVSENHNKILEENLACDTDLDAEVTEN--LAELSPNV 471
D +S S + + S+ S + + ++++ + +E N LA L N
Sbjct: 692 SDSRMNSLLDSDSVSSISDSESSEESSSDTE-MDQSTVSEPPRSSETGSNTGLASLFTNG 750
Query: 472 IRSSDEECMKNDIGVD-RIQVYRRSVTKECKVTKECKGENAIDLLREDDKDSDPVA-VNG 529
SDEE +D+ + + E G ID + D+D V VNG
Sbjct: 751 TIVSDEE---DDVSISSNFENESDESMNSSDRELEVNGNGKIDKIASTDEDDSNVEIVNG 807
Query: 530 -KVQD 533
KV+D
Sbjct: 808 SKVKD 812
Score = 49 (22.3 bits), Expect = 6.9e-67, Sum P(5) = 6.9e-67
Identities = 11/29 (37%), Positives = 14/29 (48%)
Query: 44 SPRNTPSAKRRLKNEINADRSSTKKKGND 72
S TPS K I S+T K+GN+
Sbjct: 190 SKLKTPSQTSNAKTNIRKSGSTTPKRGNE 218
Score = 48 (22.0 bits), Expect = 5.9e-66, Sum P(5) = 5.9e-66
Identities = 11/34 (32%), Positives = 17/34 (50%)
Query: 637 LAKRKLENYKAKYGTTVINICDERWKQPQRVISL 670
LAK + +N K K + +RW Q Q+V +
Sbjct: 475 LAKEREQNLK-KMSRLTMQAVKKRWNQAQKVYQI 507
Score = 47 (21.6 bits), Expect = 1.6e-28, Sum P(4) = 1.6e-28
Identities = 14/44 (31%), Positives = 23/44 (52%)
Query: 690 DECTWEKLDEPALEKYSHLTDLFVQFERQTLKKDASEDELPRGK 733
+E T +K+DE + L + + + LKKD E ++P GK
Sbjct: 1043 NERTTQKMDEETRNTVARLHQVLRPYLLRRLKKDV-EKQMP-GK 1084
Score = 46 (21.3 bits), Expect = 2.1e-28, Sum P(4) = 2.1e-28
Identities = 11/39 (28%), Positives = 20/39 (51%)
Query: 1049 IPGTEPDSGSVEFLHEMRIKASAKLTLLHSMLKVLYKEG 1087
I T+ D +VE ++ ++K +LL L+ K+G
Sbjct: 792 IASTDEDDSNVEIVNGSKVKDVPIPSLLRGTLRPYQKQG 830
Score = 42 (19.8 bits), Expect = 3.7e-66, Sum P(5) = 3.7e-66
Identities = 12/58 (20%), Positives = 23/58 (39%)
Query: 228 QLNASPTDSLADTKFHPAEEVLPHSQVTKSEQNDEVPVEKHEKSSTNGSSGIKFVLAI 285
+L + T + + T + + H+Q T + N + V K + F LA+
Sbjct: 13 RLTQNGTSTSSSTIYQNGKRTSQHAQETSTASNKKRKVSTQSKEDKLSDIIVDFNLAV 70
Score = 38 (18.4 bits), Expect = 5.9e-36, Sum P(5) = 5.9e-36
Identities = 11/33 (33%), Positives = 19/33 (57%)
Query: 443 NKILEENLACDTDLDAE---VTENLAELSPNVI 472
N+ILE+ A ++DL E T+ + E + N +
Sbjct: 1026 NRILEQTSAGNSDLIDENERTTQKMDEETRNTV 1058
Score = 38 (18.4 bits), Expect = 1.2e-25, Sum P(4) = 1.2e-25
Identities = 8/30 (26%), Positives = 16/30 (53%)
Query: 949 SLSSFEEKFNDLTTTQKVEELKKLVAPHML 978
S+ E +D T +++ +KK V P ++
Sbjct: 240 SVVEIESDLSDAETHYRIKCIKKTVPPPLV 269
Score = 37 (18.1 bits), Expect = 6.9e-64, Sum P(5) = 6.9e-64
Identities = 12/52 (23%), Positives = 22/52 (42%)
Query: 522 SDPVAVNGKVQDESAVSTEDLGERNDKMVVEDADVSLRD---NEGLTVSEIH 570
S + NGK + A T + K+ + + L D + L V+E++
Sbjct: 23 SSTIYQNGKRTSQHAQETSTASNKKRKVSTQSKEDKLSDIIVDFNLAVNELY 74
Score = 37 (18.1 bits), Expect = 2.3e-26, Sum P(4) = 2.3e-26
Identities = 9/33 (27%), Positives = 16/33 (48%)
Query: 955 EKFNDLTTTQKVEELKKLVAPHMLRRLKKDAMQ 987
+K + +K EELKK+ L + + + Q
Sbjct: 502 QKVYQIIQNEKEEELKKIKGRQHLSEMLEHSTQ 534
>FB|FBgn0020306 [details] [associations]
symbol:dom "domino" species:7227 "Drosophila melanogaster"
[GO:0004386 "helicase activity" evidence=IEA;NAS] [GO:0008283 "cell
proliferation" evidence=NAS] [GO:0016458 "gene silencing"
evidence=IGI] [GO:0008094 "DNA-dependent ATPase activity"
evidence=ISS] [GO:0002165 "instar larval or pupal development"
evidence=IMP] [GO:0006325 "chromatin organization" evidence=IMP]
[GO:0048477 "oogenesis" evidence=IMP] [GO:0005634 "nucleus"
evidence=IC;IDA] [GO:0035207 "negative regulation of hemocyte
proliferation" evidence=TAS] [GO:0030097 "hemopoiesis"
evidence=TAS] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0000381 "regulation of alternative
mRNA splicing, via spliceosome" evidence=IMP] [GO:0000123 "histone
acetyltransferase complex" evidence=IPI] [GO:0045747 "positive
regulation of Notch signaling pathway" evidence=IGI] [GO:0035222
"wing disc pattern formation" evidence=IGI] [GO:0010629 "negative
regulation of gene expression" evidence=IMP] [GO:0005515 "protein
binding" evidence=IPI] [GO:0070983 "dendrite guidance"
evidence=IMP] [GO:0022008 "neurogenesis" evidence=IMP] [GO:2000637
"positive regulation of gene silencing by miRNA" evidence=IMP]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 EMBL:AE013599 GO:GO:0005524
GO:GO:0006355 GO:GO:0003677 GO:GO:0035222 GO:GO:0048477
GO:GO:0016573 GO:GO:0045747 GO:GO:0006351 GO:GO:0007049
GO:GO:0035267 GO:GO:0004386 GO:GO:0030097 GO:GO:0043486
GO:GO:2000637 HSSP:Q97XQ5 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0016458 InterPro:IPR017877
PROSITE:PS50090 GO:GO:0070983 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
GO:GO:0008094 GO:GO:0000381 EMBL:AF076776 EMBL:AF254373
EMBL:AY058653 RefSeq:NP_524833.2 RefSeq:NP_788424.1 UniGene:Dm.7802
ProteinModelPortal:Q9NDJ2 SMR:Q9NDJ2 IntAct:Q9NDJ2 STRING:Q9NDJ2
PaxDb:Q9NDJ2 EnsemblMetazoa:FBtr0071603 GeneID:45655
KEGG:dme:Dmel_CG9696 UCSC:CG9696-RA CTD:45655 FlyBase:FBgn0020306
GeneTree:ENSGT00530000063427 InParanoid:Q9NDJ2 KO:K11320
OMA:TENDASA OrthoDB:EOG4C5B08 PhylomeDB:Q9NDJ2 GenomeRNAi:45655
NextBio:838265 Bgee:Q9NDJ2 GO:GO:0002165 GO:GO:0035207
Uniprot:Q9NDJ2
Length = 3198
Score = 411 (149.7 bits), Expect = 7.2e-67, Sum P(3) = 7.2e-67
Identities = 107/324 (33%), Positives = 164/324 (50%)
Query: 733 KGDCQQSEIVALTEQPEELKGGALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSAC 792
KG+ S V +T P LK +L +Q L+WL + N ILADEMGLGKT+
Sbjct: 893 KGNTLSSTNV-VTPVPFLLKH-SLREYQHIGLDWLVTMNERKLNGILADEMGLGKTIQTI 950
Query: 793 AFISSLYCEFKAKLPCLVLVPLSTMPNWLAEFALWAPNLNVVEYHGCAKARAIIRQYEWH 852
A ++ L C P L++VP S M NW EF W P ++ Y+G K R + ++ W
Sbjct: 951 ALLAHLACAKGNWGPHLIVVPSSVMLNWEMEFKKWCPGFKILTYYGSQKERKL-KRVGW- 1008
Query: 853 ASDPDNLNKKTSSYKFNVLLTTYEMILADSSHLRGVPWEVLVVDEGHRXXXXXXXXXXXX 912
T F+V +T+Y++++ D R W+ L++DE
Sbjct: 1009 ----------TKPNAFHVCITSYKLVVQDQQSFRRKKWKYLILDEAQNIKNFKSQRWQLL 1058
Query: 913 XXXXXQHRVLLTGTPLQNNIGEMYNLLNFLQPASFPSLSSFEEKF-NDLT---------T 962
+ R+LLTGTPLQN++ E+++L++FL P F S F+E F N +T
Sbjct: 1059 LNFSTERRLLLTGTPLQNDLMELWSLMHFLMPYVFSSHREFKEWFSNPMTGMIEGNMEYN 1118
Query: 963 TQKVEELKKLVAPHMLRRLKKDAMQNIPPKTERMVPVELSSIQAEYYRAMLTKNYQILRN 1022
+ L K++ P +LRRLKK+ + +P K E ++ LS+ Q Y +++ +
Sbjct: 1119 ETLITRLHKVIRPFLLRRLKKEVEKQMPKKYEHVITCRLSNRQRYLYEDFMSRA-KTRET 1177
Query: 1023 IGKGVAQQSMLNIVMQLRKVCNHP 1046
+ G S++N++MQLRKVCNHP
Sbjct: 1178 LQTGNLL-SVINVLMQLRKVCNHP 1200
Score = 364 (133.2 bits), Expect = 7.2e-67, Sum P(3) = 7.2e-67
Identities = 77/150 (51%), Positives = 101/150 (67%)
Query: 1072 KLTLLHSMLKVLYKEGHRVLIFSQMTKLLDILEDYLNIEFGPKTYERVDGSVSVGDRQAA 1131
KL + +L+ L GHRVLIF+QMTK+LD+LE +LN + Y R+DGS V RQ
Sbjct: 1659 KLQTMDRLLRQLKVNGHRVLIFTQMTKMLDVLEAFLN--YHGHIYLRLDGSTRVEQRQIL 1716
Query: 1132 ITRFNQDKSRFVFLLSTRSCGLGINLATADTVIIYDSDFNPHADIQAMNRAHRIGQSKRL 1191
+ RFN DK F F+LSTRS G+GINL ADTVI YDSD+NP D QA +R HRIGQ++ +
Sbjct: 1717 MERFNGDKRIFCFILSTRSGGVGINLTGADTVIFYDSDWNPTMDAQAQDRCHRIGQTRDV 1776
Query: 1192 LVYRLVVRASVEERILQLAKKKLMLDQLFV 1221
+YRLV ++E IL+ A +K ML + +
Sbjct: 1777 HIYRLVSERTIEVNILKKANQKRMLSDMAI 1806
Score = 71 (30.1 bits), Expect = 7.2e-67, Sum P(3) = 7.2e-67
Identities = 39/168 (23%), Positives = 67/168 (39%)
Query: 447 EENLACDTDLDAEVTENLAELSPNVIRSSDEECMKNDIGVDRIQVYRRSVTKECKVTKEC 506
E A D D + + AE + + DE ND+ V+++ +S ++
Sbjct: 739 EAKEASDDDENTISKQEEAEQEIDHKKEIDELEADNDLSVEQLLAKYKSEQPPSPKRRKL 798
Query: 507 KGENAIDLLREDDKDSDPVAVNGKVQDESAVSTEDLGERNDKMVVEDADVSLRDNEGLTV 566
+ E D D D AV+ + E A +TED E + V D D+ +D + +
Sbjct: 799 APRDP-----ELDSDDDSTAVDSTEESEDA-ATED--EEDLSTVKTDTDMEEQDEQEDGL 850
Query: 567 SEIHITCESTDKDVDVGKKT--SGSVAKRVQEPA-VTESAQVKGKAVS 611
+ ++T G SG+ + + A + ES Q KG +S
Sbjct: 851 KSLMADADATSGAAGSGSTAGASGNKDDMLNDAAALAESLQPKGNTLS 898
Score = 61 (26.5 bits), Expect = 8.0e-66, Sum P(3) = 8.0e-66
Identities = 37/156 (23%), Positives = 70/156 (44%)
Query: 416 DTSSSCHISATATDDRHSDDFLVSENHNKILEENLACDTDLDAEVTENLAELSPNVIRSS 475
DT S + S + R SDD E+ ++ EE +A + A+V E + L+
Sbjct: 640 DTPS-LNSSRLTSPKRESDDDFRPESGSEDDEETIAKAEEDAADVKEEVTALAKESEMDF 698
Query: 476 DEECMKNDIGVDRIQVYRRSVTKECKVTKECKGENAIDLLREDDKDSDPVAVNGKVQDES 535
D+ ND+ ++ R + KE + + K E +D DS+ A DE+
Sbjct: 699 DD--FLNDLPPGYLE-NRDKLMKE-EQSSAIKTETP-----DDSDDSEFEAKEASDDDEN 749
Query: 536 AVSTEDLGER--NDKMVVEDADVSLRDNEGLTVSEI 569
+S ++ E+ + K +++ + DN+ L+V ++
Sbjct: 750 TISKQEEAEQEIDHKKEIDELEA---DND-LSVEQL 781
Score = 50 (22.7 bits), Expect = 1.1e-64, Sum P(3) = 1.1e-64
Identities = 60/278 (21%), Positives = 106/278 (38%)
Query: 185 VKSLEKSL-DSSQVDVSCSTKPENTSAGV--PVEGSSSCPNDDDEKQLNASPTDSLADTK 241
V+ + KS+ D+ ++ S T P+ S P GS +DDE+ + + D+ AD K
Sbjct: 631 VEGMNKSVADTPSLNSSRLTSPKRESDDDFRPESGS-----EDDEETIAKAEEDA-ADVK 684
Query: 242 FHPAEEVLPHSQVTKSEQND---EVP---VEKHEK-SSTNGSSGIKFVLAIGASERDRKR 294
EEV ++ ++ + +D ++P +E +K SS IK + + + +
Sbjct: 685 ----EEVTALAKESEMDFDDFLNDLPPGYLENRDKLMKEEQSSAIKTETPDDSDDSEFEA 740
Query: 295 KPEVKDEDSQKKLRVDXXXXXXXXXXXXXXXIGTLSPGTSKLHEKQRTNNDEVSASLCEV 354
K E D+D + + +L K ++ S ++
Sbjct: 741 K-EASDDDENTISKQEEAEQEIDHKKEIDELEADNDLSVEQLLAKYKSEQPP-SPKRRKL 798
Query: 355 DVGTKGLDAQRKDELAEETTDPLDKSDKAGVHVNEIPLCKDIVPFELQ--QVDRVLGCRV 412
LD+ D A ++T+ + D A ++ K E Q Q D +
Sbjct: 799 APRDPELDSD-DDSTAVDSTE--ESEDAATEDEEDLSTVKTDTDMEEQDEQEDGLKSLMA 855
Query: 413 KGDDTSSSCHISATATDDRHSDDFLVSENHNKILEENL 450
D TS + +TA + DD L N L E+L
Sbjct: 856 DADATSGAAGSGSTAGASGNKDDML---NDAAALAESL 890
Score = 45 (20.9 bits), Expect = 4.6e-25, Sum P(3) = 4.6e-25
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 228 QLNASPTDSLADTKFHPAEEVLPHSQVTK 256
++ ASP L +K P +LP +V K
Sbjct: 1310 KVGASPAMRLEGSKIMPMRNLLPSGRVLK 1338
Score = 41 (19.5 bits), Expect = 9.9e-64, Sum P(3) = 9.9e-64
Identities = 16/75 (21%), Positives = 28/75 (37%)
Query: 541 DLGERNDKMVVEDADVSLRDNEGLTVSEIHITCESTDKDV--DVGKKTSGSVAKRVQEPA 598
D E+ + +VE + S+ D L S + +D D + G + + +E A
Sbjct: 621 DQTEKFSQQLVEGMNKSVADTPSLNSSRLTSPKRESDDDFRPESGSEDDEETIAKAEEDA 680
Query: 599 VTESAQVKGKAVSYE 613
+V A E
Sbjct: 681 ADVKEEVTALAKESE 695
Score = 37 (18.1 bits), Expect = 9.5e-28, Sum P(3) = 9.5e-28
Identities = 13/47 (27%), Positives = 22/47 (46%)
Query: 942 LQPASFPSLSSFEEKFNDLTTTQKVEELKKLVAPHMLRRLKKDAMQN 988
+Q S + + E+ + KV+EL ++ L LK+ AM N
Sbjct: 1471 VQKQSIANGKTEPEEETEAEDPYKVQELIQMRKEQRLAALKRMAMIN 1517
>UNIPROTKB|I3LDG1 [details] [associations]
symbol:LOC100738357 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR002464 Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003677
InterPro:IPR014001 PROSITE:PS51192 GO:GO:0008026
GeneTree:ENSGT00560000077077 EMBL:FP236283
Ensembl:ENSSSCT00000031310 OMA:ENWRTEL Uniprot:I3LDG1
Length = 323
Score = 689 (247.6 bits), Expect = 9.1e-67, P = 9.1e-67
Identities = 153/321 (47%), Positives = 205/321 (63%)
Query: 877 MILADSSHLRGVPWEVLVVDEGHRXXXXXXXXXXXXXXXXXQHRVLLTGTPLQNNIGEMY 936
MILAD L+ + W +++DE HR +H+VLLTGTPLQN++ E++
Sbjct: 1 MILADCPELKKIHWSCVIIDEAHRLKNRNCKLLEGLKLMALEHKVLLTGTPLQNSVEELF 60
Query: 937 NLLNFLQPASFPSLSSFEEKFNDLTTTQKVEELKKLVAPHMLRRLKKDAMQNIPPKTERM 996
+LLNFL+P+ FPS ++F E+F DL T ++V++L+ ++ P MLRRLK D +N+ PK E +
Sbjct: 61 SLLNFLEPSQFPSETAFLEEFGDLKTEEQVKKLQSILKPMMLRRLKDDVEKNLAPKQETI 120
Query: 997 VPVELSSIQAEYYRAMLTKNYQILRNIGKGVAQQSMLNIV---MQLRKVCNHPYLIPGTE 1053
+ VEL++IQ +YYRA+L KN+ L KG Q +M N++ M+LRK CNHPYLI G E
Sbjct: 121 IEVELTNIQKKYYRAILEKNFSFLT---KGANQHNMPNLINTMMELRKCCNHPYLINGAE 177
Query: 1054 ------------PDSGSVEFLHEMRIKASAKLTLLHSMLKVLYKEGHRVLIFSQMTKLLD 1101
PD+ +F + I+A+ KL L+ +L L GH+VLIFSQM + LD
Sbjct: 178 EKILEDFRKTHSPDAP--DFQLQAMIQAAGKLVLIDKLLPKLIAGGHKVLIFSQMVRCLD 235
Query: 1102 ILEDYLNIEFGPKTYERVDGSVSVGDRQAAITRF-NQDKSRFVFLLSTRSCGLGINLATA 1160
ILEDYL I+ TYER+DG V RQAAI RF D RFVFLL TR+ GLGINL A
Sbjct: 236 ILEDYL-IQ-RRYTYERIDGRVRGNLRQAAIDRFCKPDSDRFVFLLCTRAGGLGINLTAA 293
Query: 1161 DTVIIYDSDFNPHADIQAMNR 1181
DT II+DSD+NP D+Q R
Sbjct: 294 DTCIIFDSDWNPQNDLQVTIR 314
>WB|WBGene00007027 [details] [associations]
symbol:ssl-1 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0000003 "reproduction" evidence=IMP] [GO:0040011 "locomotion"
evidence=IMP] [GO:0040010 "positive regulation of growth rate"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0040035
"hermaphrodite genitalia development" evidence=IMP]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0009792 GO:GO:0040007 GO:GO:0040010 GO:GO:0002119
GO:GO:0003677 GO:GO:0040011 GO:GO:0016568 GO:GO:0040035
GO:GO:0004386 HSSP:Q97XQ5 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 PROSITE:PS51204 GeneTree:ENSGT00530000063427 KO:K11320
EMBL:AL132904 EMBL:AY551965 RefSeq:NP_001255179.1
RefSeq:NP_001255180.1 RefSeq:NP_001255181.1 RefSeq:NP_001255182.1
UniGene:Cel.203 ProteinModelPortal:Q9NEL2 SMR:Q9NEL2
MINT:MINT-3384018 PaxDb:Q9NEL2 EnsemblMetazoa:Y111B2A.22a
GeneID:190954 KEGG:cel:CELE_Y111B2A.22 UCSC:Y111B2A.22 CTD:190954
WormBase:Y111B2A.22a WormBase:Y111B2A.22b WormBase:Y111B2A.22c
WormBase:Y111B2A.22d InParanoid:Q9NEL2 OMA:HLACSES NextBio:947488
ArrayExpress:Q9NEL2 Uniprot:Q9NEL2
Length = 2395
Score = 432 (157.1 bits), Expect = 1.4e-66, Sum P(4) = 1.4e-66
Identities = 122/370 (32%), Positives = 187/370 (50%)
Query: 716 ERQTLKKDASEDELP-RGKGDCQQSEIVALTEQPEELKGGALFPHQLEALNWLRKCWHKS 774
ERQ + +E+ L + KG ++ V T P ++G L +Q+ L+W+ + K+
Sbjct: 519 ERQQELANIAEEALKFQPKGYTLETTQVK-TPVPFLIRG-QLREYQMVGLDWMVTLYEKN 576
Query: 775 KNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLSTMPNWLAEFALWAPNLNVV 834
N ILADEMGLGKT+ + ++ + C P L++VP S + NW EF W P L ++
Sbjct: 577 LNGILADEMGLGKTIQTISLLAHMACSESIWGPHLIVVPTSVILNWEMEFKKWCPALKIL 636
Query: 835 EYHGCAKARAIIRQYEWHASDPDNLNKKTSSYKFNVLLTTYEMILADSSHLRGVPWEVLV 894
Y G AK RA R+ W K + F+V +T+Y+ + D + W+ L+
Sbjct: 637 TYFGTAKERAEKRK-GW---------MKPNC--FHVCITSYKTVTQDIRAFKQRAWQYLI 684
Query: 895 VDEGHRXXXXXXXXXXXXXXXXXQHRVLLTGTPLQNNIGEMYNLLNFLQPASFPSLSSFE 954
+DE + R+LLTGTPLQN++ E+++L++FL P F S F+
Sbjct: 685 LDEAQNIKNWKSQRWQALLNVRARRRLLLTGTPLQNSLMELWSLMHFLMPTIFSSHDDFK 744
Query: 955 EKF-NDLTTTQK---------VEELKKLVAPHMLRRLKKDAMQNIPPKTERMVPVELSSI 1004
+ F N LT + + L K++ P +LRRLKK+ + +P KTE +V LS
Sbjct: 745 DWFSNPLTGMMEGNMEFNAPLIGRLHKVLRPFILRRLKKEVEKQLPEKTEHIVNCSLSKR 804
Query: 1005 QAEYYRAMLTKNYQILRNIGKGVAQQSMLNIVMQLRKVCNHPYLIPGTEPDSGSVEFLHE 1064
Q Y +++ N+ G S+LNIVMQLRK CNHP L EP F+ E
Sbjct: 805 QRYLYDDFMSRR-STKENLKSG-NMMSVLNIVMQLRKCCNHPNLF---EPRPVVAPFVVE 859
Query: 1065 -MRIKASAKL 1073
+++ A+L
Sbjct: 860 KLQLDVPARL 869
Score = 361 (132.1 bits), Expect = 1.4e-66, Sum P(4) = 1.4e-66
Identities = 96/256 (37%), Positives = 140/256 (54%)
Query: 1072 KLTLLHSMLKVLYKEGHRVLIFSQMTKLLDILEDYLNIEFGPKTYERVDGSVSVGDRQAA 1131
KL L +L+ LY HR LIF+QM+K+LD+L+ +L+ G + Y R+DG+ V RQA
Sbjct: 1189 KLQTLAVLLRQLYLYKHRCLIFTQMSKMLDVLQTFLS-HHGYQ-YFRLDGTTGVEQRQAM 1246
Query: 1132 ITRFNQDKSRFVFLLSTRSCGLGINLATADTVIIYDSDFNPHADIQAMNRAHRIGQSKRL 1191
+ RFN D F F+LSTRS G+G+NL ADTVI YDSD+NP D QA +R HRIGQ++ +
Sbjct: 1247 MERFNADPKVFCFILSTRSGGVGVNLTGADTVIFYDSDWNPTMDAQAQDRCHRIGQTRNV 1306
Query: 1192 LVYRLVVRASVEERILQLAKKKLMLDQLFVNKSGSQKEVEDILRWGTEELFNDSPGINGK 1251
+YRL+ ++EE IL+ A +K L +L ++++G T E F S I
Sbjct: 1307 SIYRLISERTIEENILRKATQKRRLGELAIDEAGF-----------TPEFFKQSDSIRDL 1355
Query: 1252 DMGENN--TSIEEAVRDLEQKHRKRGGGLGDVYQDKCTEGSTKI-VWDENAIARLLDRSN 1308
GEN T++ + + +K + +D+ + KI V + N D +
Sbjct: 1356 FDGENVEVTAVADVATTMSEKEMEVAMAK---CEDEADVNAAKIAVAEANVDNAEFDEKS 1412
Query: 1309 LQSGSTDLAEGDLEND 1324
L S +GD E D
Sbjct: 1413 LPPMSN--LQGDEEAD 1426
Score = 293 (108.2 bits), Expect = 1.7e-59, Sum P(4) = 1.7e-59
Identities = 85/267 (31%), Positives = 129/267 (48%)
Query: 1116 YERVDGSVSVGDRQAAITRFNQDKSRFVFLLSTRSCGLGINLATADTVIIYDSDFNPHAD 1175
Y R+DG+ V RQA + RFN D F F+LSTRS G+G+NL ADTVI YDSD+NP D
Sbjct: 1231 YFRLDGTTGVEQRQAMMERFNADPKVFCFILSTRSGGVGVNLTGADTVIFYDSDWNPTMD 1290
Query: 1176 IQAMNRAHRIGQSKRLLVYRLVVRASVEERILQLAKKKLMLDQLFVNKSGSQKEVEDILR 1235
QA +R HRIGQ++ + +YRL+ ++EE IL+ A +K L +L ++++G
Sbjct: 1291 AQAQDRCHRIGQTRNVSIYRLISERTIEENILRKATQKRRLGELAIDEAGF--------- 1341
Query: 1236 WGTEELFNDSPGINGKDMGENN--TSIEEAVRDLEQKHRKRGGGLGDVYQDKCTEGSTKI 1293
T E F S I GEN T++ + + +K +V KC + +
Sbjct: 1342 --TPEFFKQSDSIRDLFDGENVEVTAVADVATTMSEKEM-------EVAMAKCEDEA--- 1389
Query: 1294 VWDENAIARLLDRSNLQSGSTDLAEGDLENDMLGSVKATEWNEETTEDQAESPVAAVDDA 1353
D NA + +N+ + D +++ G +A E E + A++
Sbjct: 1390 --DVNAAKIAVAEANVDNAEFDEKSLPPMSNLQGDEEADEKYMELIQQLKPIERYAINFL 1447
Query: 1354 SAE-----NSERKEENAVTGIEENEWD 1375
+ E KE A+ + EWD
Sbjct: 1448 ETQYKPEFEEECKEAEALIDQKREEWD 1474
Score = 52 (23.4 bits), Expect = 1.4e-66, Sum P(4) = 1.4e-66
Identities = 36/197 (18%), Positives = 71/197 (36%)
Query: 412 VKGDDTSSSCHISATATDDRHSDDFLVSENHNKILEENLACDTDLDAEVTENLAELSPNV 471
+ D A +D D+ ++ +E++ ++DA E ++ +
Sbjct: 363 IASDRDDKDEEFKAPGSDSESDDEQTIANAEKSQKKEDVR--QEVDALQNEATVDMDDFL 420
Query: 472 IRSSDEECMKNDIGVDRIQVYRRSVTKECKVTKECKGENAIDLLREDDKDSDPVAVNGKV 531
E + + ++ +R +E K KE G+N + ++ SD
Sbjct: 421 YTLPPEYLKAYGLTQEDLEEMKREKLEEQKARKEACGDNEEKMEIDESPSSD-------A 473
Query: 532 QDESAVSTEDLGERNDKMVVEDADVSLRDNEGLTVSEIHITCESTDKDVDVGKKTS-GSV 590
Q S S++ E+ ED + D G+ + ++ S D D + +
Sbjct: 474 QKPSTSSSDLTAEQLQDPTAEDGN---GDGHGVLENVDYVKLNSQDSDERQQELANIAEE 530
Query: 591 AKRVQEPAVT-ESAQVK 606
A + Q T E+ QVK
Sbjct: 531 ALKFQPKGYTLETTQVK 547
Score = 45 (20.9 bits), Expect = 1.4e-66, Sum P(4) = 1.4e-66
Identities = 17/53 (32%), Positives = 22/53 (41%)
Query: 229 LNASPTDSLADTKF--------HPAEEVLPHSQVTKSEQNDEVPVEKHEKSST 273
LN S D L D +F P P + K+ Q EV +E E S+T
Sbjct: 131 LNGSVEDILKDPRFAVMADLTKEPPPTPAPPPPIQKTMQPIEVKIEDSEGSNT 183
>UNIPROTKB|F1Q2U2 [details] [associations]
symbol:CHD1L "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR002464 Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003677
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR002589
PROSITE:PS51154 GO:GO:0008026 OMA:TCQTIAL
GeneTree:ENSGT00670000098110 EMBL:AAEX03011032
Ensembl:ENSCAFT00000017488 Uniprot:F1Q2U2
Length = 898
Score = 677 (243.4 bits), Expect = 1.5e-66, Sum P(2) = 1.5e-66
Identities = 160/393 (40%), Positives = 232/393 (59%)
Query: 867 KFNVLLTTYEMILADSSHLRGVPWEVLVVDEGHRXXXXXXXXXXXXXXXXXQHRVLLTGT 926
+F+VLLTTYE+ L DSS L+ PW VLVVDE HR +LLTGT
Sbjct: 147 RFHVLLTTYEICLKDSSFLKSFPWSVLVVDEAHRLKNQNSLLHKTLLEFSVVFSLLLTGT 206
Query: 927 PLQNNIGEMYNLLNFLQPASFPS--LSSFEEKFNDLTT-TQKVEELKKLVAPHMLRRLKK 983
P+QN++ E+Y+LL+F++P FP + F +++ D+ + EL KL+ P +LRR+K
Sbjct: 207 PIQNSLQELYSLLSFVEPDLFPKEQVGDFVQRYQDIEKESDSASELHKLLQPFLLRRVKA 266
Query: 984 DAMQNIPPKTERMVPVELSSIQAEYYRAMLTKNYQILRN-IGKGVAQQSMLNIVMQLRKV 1042
+ +P KTE ++ +S++Q +YY+A+L K+ + + K V Q N++ QLRK
Sbjct: 267 EVATELPKKTEVVLYHGMSALQKKYYKAILMKDLDAFESEMAKKVKLQ---NVLSQLRKC 323
Query: 1043 CNHPYLIPGTEPDSGSVEFLHEMRIKASAKLTLLHSMLKVLY-KEGHRVLIFSQMTKLLD 1101
+HPYL G +V F + + L + L L+ GHRVL+FSQMT++LD
Sbjct: 324 VDHPYLFEGE-----TVPFFLTLLFMTTPLKNLELAALSFLFLARGHRVLLFSQMTQMLD 378
Query: 1102 ILEDYLNIEFGPKTYERVDGSVSVGDRQAAITRFNQDKSRFVFLLSTRSCGLGINLATAD 1161
IL+DY+ ++ +YERVDGSV +R AI F Q FVFLLSTR+ G+G+NL AD
Sbjct: 379 ILQDYM--DYRGYSYERVDGSVRGEERHLAIKNFGQQPV-FVFLLSTRAGGVGMNLTAAD 435
Query: 1162 TVIIYDSDFNPHADIQAMNRAHRIGQSKRLLVYRLVVRASVEERILQLAKKKLMLDQLFV 1221
TVI DSDFNP D+QA RAHRIGQ+K + V RL+ R +VEE + + A KL L +
Sbjct: 436 TVIFVDSDFNPQNDLQAAARAHRIGQNKSVKVIRLIGRDTVEEIVYRKAASKLQLTNAII 495
Query: 1222 NKS----GSQK-------EVEDILRWGTEELFN 1243
G+QK ++ +IL++G ++L +
Sbjct: 496 EGGHFTLGAQKPAADADLQLSEILKFGLDKLLS 528
Score = 584 (210.6 bits), Expect = 1.6e-52, Sum P(2) = 1.6e-52
Identities = 140/383 (36%), Positives = 210/383 (54%)
Query: 731 RGKGDCQQSEIVALTEQPEELKGGALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVS 790
R +G+ ++ + Q L G L +QLE +NWL +C+H IL DEMGLGKT
Sbjct: 23 RSRGEAARTRVEEQDLQQWGLTGIRLRSYQLEGVNWLARCFHCQNGCILGDEMGLGKTCQ 82
Query: 791 ACAFISSLYCEFKAKLPCLVLVPLSTMPNWLAEFALWAPNLNVVEYHGCAKARAIIRQYE 850
A L + P L+L PLS + NW E +AP L+ V Y G + RA ++Q
Sbjct: 83 TIALFIYLAGRLNDEGPFLILCPLSVLSNWTEEMERFAPGLSCVMYAGDKEERARLQQ-- 140
Query: 851 WHASDPDNLNKKTSSYKFNVLLTTYEMILADSSHLRGVPWEVLVVDEGHRXXXXXXXXXX 910
+L +++ +F+VLLTTYE+ L DSS L+ PW VLVVDE HR
Sbjct: 141 -------DLKQES---RFHVLLTTYEICLKDSSFLKSFPWSVLVVDEAHRLKNQNSLLHK 190
Query: 911 XXXXXXXQHRVLLTGTPLQNNIGEMYNLLNFLQPASFPS--LSSFEEKFNDLTT-TQKVE 967
+LLTGTP+QN++ E+Y+LL+F++P FP + F +++ D+ +
Sbjct: 191 TLLEFSVVFSLLLTGTPIQNSLQELYSLLSFVEPDLFPKEQVGDFVQRYQDIEKESDSAS 250
Query: 968 ELKKLVAPHMLRRLKKDAMQNIPPKTERMVPVELSSIQAEYYRAMLTKNYQILRN-IGKG 1026
EL KL+ P +LRR+K + +P KTE ++ +S++Q +YY+A+L K+ + + K
Sbjct: 251 ELHKLLQPFLLRRVKAEVATELPKKTEVVLYHGMSALQKKYYKAILMKDLDAFESEMAKK 310
Query: 1027 VAQQSMLNIVMQLRKVCNHPYLIPGTEPDSGSVEFLHEMRIKASAKLTLLHSMLKVLY-K 1085
V Q N++ QLRK +HPYL G +V F + + L + L L+
Sbjct: 311 VKLQ---NVLSQLRKCVDHPYLFEGE-----TVPFFLTLLFMTTPLKNLELAALSFLFLA 362
Query: 1086 EGHRVLIFSQMTKLLDILEDYLN 1108
GHRVL+FSQMT++LDIL+DY++
Sbjct: 363 RGHRVLLFSQMTQMLDILQDYMD 385
Score = 39 (18.8 bits), Expect = 1.5e-66, Sum P(2) = 1.5e-66
Identities = 10/39 (25%), Positives = 20/39 (51%)
Query: 269 EKSSTNGSSGIK--FVLAIGASERDRKRKPEVKDEDSQK 305
E++ S G F+LA+ + R + V+++D Q+
Sbjct: 2 ERAGAGRSGGDMPGFLLAVQSRSRGEAARTRVEEQDLQQ 40
>DICTYBASE|DDB_G0267638 [details] [associations]
symbol:DDB_G0267638 "CHR group protein" species:44689
"Dictyostelium discoideum" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 dictyBase:DDB_G0267638 GO:GO:0005524
GO:GO:0003677 EMBL:AAFI02000003 GO:GO:0003682 SUPFAM:SSF46689
GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR017877 PROSITE:PS50090
InterPro:IPR014012 PROSITE:PS51204 KO:K11320 RefSeq:XP_647182.1
ProteinModelPortal:Q55GK2 EnsemblProtists:DDB0220518 GeneID:8615986
KEGG:ddi:DDB_G0267638 InParanoid:Q55GK2 OMA:ISFEAFA Uniprot:Q55GK2
Length = 3069
Score = 421 (153.3 bits), Expect = 1.7e-66, Sum P(6) = 1.7e-66
Identities = 114/337 (33%), Positives = 170/337 (50%)
Query: 745 TEQPEELKGGALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKA 804
T+ P LK L +Q L+WL + K+ N ILADEMGLGKT+ + I+ L +
Sbjct: 771 TKVPFLLKF-PLREYQHIGLDWLVSLYEKNLNGILADEMGLGKTIMTISLIAYLAVQKGV 829
Query: 805 KLPCLVLVPLSTMPNWLAEFALWAPNLNVVEYHGCAKARAIIRQYEWHASDPDNLNKKTS 864
P L++VP S + NW EF W P L + YHG ++ R R+ W S+
Sbjct: 830 WGPHLIVVPSSVLFNWEMEFKRWCPGLKIFTYHGTSRDRKANRK-GWSKSNA-------- 880
Query: 865 SYKFNVLLTTYEMILADSSHLRGVPWEVLVVDEGHRXXXXXXXXXXXXXXXXXQHRVLLT 924
F+V +T+Y M+++D R W +++DE H + R+LLT
Sbjct: 881 ---FHVCITSYSMVMSDHLIFRRKKWVYMILDEAHVIKNFKTQRWQNMLHFNTERRLLLT 937
Query: 925 GTPLQNNIGEMYNLLNFLQPASFPSLSSFEEKFNDLTTTQ-----KVEE-----LKKLVA 974
GTPLQNN+ E+++L++FL P F S F++ F++ T V E L ++
Sbjct: 938 GTPLQNNLMELWSLMHFLMPDIFQSHREFQDWFSNPVTGMIEGGDDVNEDIINRLHAVLR 997
Query: 975 PHMLRRLKKDAMQNIPPKTERMVPVELSSIQAEYYRAMLTKNYQILRNIGKGVAQQSMLN 1034
P +LRRLKKD + +PPK +VP +S Q Y + + + G + S++N
Sbjct: 998 PFLLRRLKKDVEKQMPPKHTHIVPCSMSRRQKFLYEEFINSS-STQSTLSSG-SFFSIIN 1055
Query: 1035 IVMQLRKVCNHPYLIPGTEPDSGSVEFLHEMRIKASA 1071
I+MQLRKVCNHP L P +E L+ + K S+
Sbjct: 1056 ILMQLRKVCNHPDLFE-IRPIVSPLE-LYPIHFKTSS 1090
Score = 373 (136.4 bits), Expect = 1.7e-66, Sum P(6) = 1.7e-66
Identities = 75/154 (48%), Positives = 106/154 (68%)
Query: 1072 KLTLLHSMLKVLYKEGHRVLIFSQMTKLLDILEDYLNIEFGPKTYERVDGSVSVGDRQAA 1131
KL L +L+ L ++GHR LIF+QMTK+LDI E +LN+ TY R+DGS + RQ
Sbjct: 1380 KLQQLAILLRRLKQQGHRALIFTQMTKMLDIFETFLNLH--AYTYLRLDGSTKIDKRQVL 1437
Query: 1132 ITRFNQDKSRFVFLLSTRSCGLGINLATADTVIIYDSDFNPHADIQAMNRAHRIGQSKRL 1191
RFN D F+F+LSTRS GLG+NL ADTVI YD+D+NP D QA +R HRIGQ++ +
Sbjct: 1438 TERFNTDPKIFLFILSTRSGGLGLNLTGADTVIFYDTDWNPSMDAQAQDRCHRIGQTREV 1497
Query: 1192 LVYRLVVRASVEERILQLAKKKLMLDQLFVNKSG 1225
+YR + + ++EE IL+ + +K LD++ + K+G
Sbjct: 1498 NIYRFITQHTIEENILKKSNQKRQLDKMVI-KAG 1530
Score = 54 (24.1 bits), Expect = 1.7e-66, Sum P(6) = 1.7e-66
Identities = 17/71 (23%), Positives = 31/71 (43%)
Query: 1305 DRSNLQSGSTDLAEGDLENDMLGSVKATEWNEETTEDQAESPVAAVDDASAENSERKEEN 1364
D+ NL+ + E + EN+ + + NE+ E Q + ++ E ++EN
Sbjct: 1734 DKENLKENEKE-KENENENENENENEKEKDNEKEREKQEKENEIEIEKEKGNEKENEKEN 1792
Query: 1365 AVTGIEENEWD 1375
+ENE D
Sbjct: 1793 EKE--KENERD 1801
Score = 54 (24.1 bits), Expect = 1.7e-66, Sum P(6) = 1.7e-66
Identities = 20/81 (24%), Positives = 33/81 (40%)
Query: 200 SCSTKPENTSAGVPVEGSSSCPNDDDEKQLNASPTDSLADTK------FHPAEEVLPH-S 252
S ST +++G P+ G ++ P + N + + + K F AEE L S
Sbjct: 325 SSSTSTSTSTSGTPIGGINTTPTNTTPTSTNNNNNKGICNIKDTTPIPFSLAEETLTDKS 384
Query: 253 QVTKSEQNDEVPVEKHEKSST 273
K+ ++ E SST
Sbjct: 385 TPIKTSIQQPQKKQRRESSST 405
Score = 54 (24.1 bits), Expect = 1.7e-66, Sum P(6) = 1.7e-66
Identities = 28/123 (22%), Positives = 59/123 (47%)
Query: 422 HISATATDDRHSDDFLVSENHNKILEENLACDTDLDAEVTENLAELSPNVIRSSDEECMK 481
H + T D + D V E+ N+I E N D + E + +L++ + N D E ++
Sbjct: 628 HSTITPKDLLNQFDHDVDEDGNEI-EYN--DDFNTSDESSCDLSDDNINEEEDDDGEQLE 684
Query: 482 NDIGVDRIQVYRRSVTKEC--KVTKECKGENAIDLLREDDKDSDPVAVNGKVQDESAVST 539
+ ++ +++ E K+ +E K +N D ++ D++ N +E+++ST
Sbjct: 685 SKEYLEELKLESEMPLDELLKKLDQE-KSDNDDDDNNNNEDDNNNNNNNNNNNNENSIST 743
Query: 540 EDL 542
+D+
Sbjct: 744 KDI 746
Score = 52 (23.4 bits), Expect = 2.7e-66, Sum P(6) = 2.7e-66
Identities = 22/122 (18%), Positives = 48/122 (39%)
Query: 441 NHNKILEENLACDTDLDAEVTENLAELSPNVIRSSDEECMKNDIGV------DRIQVYRR 494
+H+ I ++L D D + N E + + S + C +D + D Q+ +
Sbjct: 627 HHSTITPKDLLNQFDHDVDEDGNEIEYNDDFNTSDESSCDLSDDNINEEEDDDGEQLESK 686
Query: 495 SVTKECKVTKECKGENAIDLLREDDKDSDPVAVNGKVQDESAVSTEDLGERNDKMVVEDA 554
+E K+ E + + L ++ D+D N D + + + N++ +
Sbjct: 687 EYLEELKLESEMPLDELLKKLDQEKSDNDDDDNNNNEDDNN--NNNNNNNNNNENSISTK 744
Query: 555 DV 556
D+
Sbjct: 745 DI 746
Score = 46 (21.3 bits), Expect = 2.1e-66, Sum P(4) = 2.1e-66
Identities = 16/58 (27%), Positives = 28/58 (48%)
Query: 223 DDDEKQLNASPTDSLADTKFH---PAEEVLPHSQVTKSEQNDEVPVEKHEKSSTNGSS 277
DDD +QL + + L + K P +E+L KS+ ND+ +E + N ++
Sbjct: 677 DDDGEQLESK--EYLEELKLESEMPLDELLKKLDQEKSD-NDDDDNNNNEDDNNNNNN 731
Score = 46 (21.3 bits), Expect = 1.1e-65, Sum P(6) = 1.1e-65
Identities = 31/170 (18%), Positives = 69/170 (40%)
Query: 129 ISNLDSISKRARSKIITIKSQSGVKSSGADKVSQIFGNSILARKRSNKGKSVLALGVKSL 188
I NL S++ ++ T S + + +K I ++ R +S + K +L +
Sbjct: 239 IDNLSSLTSKSLQPTTT---SSKIPTIPVEKPI-IEKPTLPERPKSERLKRQQSLLNSTD 294
Query: 189 EKSLDSSQVDVSCSTKPENTSAGVPVEGSSSCPNDDDEKQLNASPTDSLADTKFHPAEEV 248
K L ++ + +T P T+A P SS + + +P + T +
Sbjct: 295 SKKLSTTSTTTTTTTTPTTTTATTPPPPPSSS-STSTSTSTSGTPIGGINTTPTNTTPTS 353
Query: 249 LPHSQ---VTKSEQNDEVPVEKHEKSSTNGSSGIKFVLAIGASERDRKRK 295
++ + + +P E++ T+ S+ IK +I ++ ++R+
Sbjct: 354 TNNNNNKGICNIKDTTPIPFSLAEETLTDKSTPIK--TSIQQPQKKQRRE 401
Score = 43 (20.2 bits), Expect = 2.3e-65, Sum P(6) = 2.3e-65
Identities = 13/47 (27%), Positives = 21/47 (44%)
Query: 1284 DKCTEGSTKIVWDENAIARLLDRSNLQSGSTDLAEGDLENDMLGSVK 1330
D + T+ W ENA+ + D S++ + L E D E +K
Sbjct: 1549 DTIKDNVTQQEW-ENAVEQAEDESDVLAYKNALKEADNEYQEFVEIK 1594
Score = 43 (20.2 bits), Expect = 5.0e-32, Sum P(5) = 5.0e-32
Identities = 20/90 (22%), Positives = 42/90 (46%)
Query: 1283 QDKCTE-GSTKIVWDENAIARLLDRSNLQSGSTDLAEGDLENDMLGSVKATEWNEETTED 1341
QD+C G T+ V N I R + + ++ + + D + +KA E+ + ++
Sbjct: 1485 QDRCHRIGQTREV---N-IYRFITQHTIEENILKKSNQKRQLDKM-VIKAGEFTTDFFKN 1539
Query: 1342 QAESPVAAVDDASAENSERKEENAVTGIEE 1371
S +++D ++++ ENAV E+
Sbjct: 1540 LNLSTKSSIDTIKDNVTQQEWENAVEQAED 1569
Score = 41 (19.5 bits), Expect = 8.0e-32, Sum P(5) = 8.0e-32
Identities = 7/25 (28%), Positives = 14/25 (56%)
Query: 1169 DFNPHADIQAMNRAHRIGQSKRLLV 1193
D N D + R R+G+ K++++
Sbjct: 1965 DENEGNDFEGGGRGGRVGEGKKVMI 1989
Score = 40 (19.1 bits), Expect = 4.7e-65, Sum P(6) = 4.7e-65
Identities = 16/53 (30%), Positives = 24/53 (45%)
Query: 419 SSCHISATATDDRHSDDFLVSENHNKILEENLACDTDLDAEVTENL-AELSPN 470
SSC +S ++ DD E+ + E L + LD E+ + L E S N
Sbjct: 663 SSCDLSDDNINEEEDDDGEQLESKEYLEELKLESEMPLD-ELLKKLDQEKSDN 714
Score = 39 (18.8 bits), Expect = 5.9e-65, Sum P(6) = 5.9e-65
Identities = 10/36 (27%), Positives = 15/36 (41%)
Query: 1328 SVKATEWNEETTEDQAESPVAAVDDASAENSERKEE 1363
+V EW + + ES V A +A E +E
Sbjct: 1554 NVTQQEWENAVEQAEDESDVLAYKNALKEADNEYQE 1589
Score = 38 (18.4 bits), Expect = 1.7e-66, Sum P(6) = 1.7e-66
Identities = 9/40 (22%), Positives = 20/40 (50%)
Query: 365 RKDELAEETTDPLDKSDKAGVHVNEIPLCKDIVPFELQQV 404
+K + E ++ L+K + + P+ + +P E QQ+
Sbjct: 395 QKKQRRESSSTQLNKQITEQIQQQQQPIEEITIPIEQQQM 434
Score = 37 (18.1 bits), Expect = 2.0e-31, Sum P(5) = 2.0e-31
Identities = 8/20 (40%), Positives = 13/20 (65%)
Query: 1161 DTVIIYDSDFNPH--ADIQA 1178
D +I+ D+D+N AD +A
Sbjct: 1936 DNIIVNDNDYNEEDGADDEA 1955
>UNIPROTKB|J9PA79 [details] [associations]
symbol:SMARCAD1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR003892 InterPro:IPR009060 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51140 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 SUPFAM:SSF46934 GeneTree:ENSGT00630000089890
OMA:KNQRGIQ EMBL:AAEX03016768 EMBL:AAEX03016769
Ensembl:ENSCAFT00000043847 Uniprot:J9PA79
Length = 1026
Score = 445 (161.7 bits), Expect = 1.7e-66, Sum P(4) = 1.7e-66
Identities = 113/317 (35%), Positives = 167/317 (52%)
Query: 746 EQPEELKGG-ALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKA 804
EQP L +L P+Q LNWL N ILADEMGLGKT+ A AF++ LY E
Sbjct: 486 EQPSILNQSLSLKPYQKVGLNWLALVHKHGLNGILADEMGLGKTIQAIAFLAYLYQEGN- 544
Query: 805 KLPCLVLVPLSTMPNWLAEFALWAPNLNVVEYHGCAKARAIIRQYEWHASDPDNLNKKTS 864
K P L++VP ST+ NWL E LW P L V+ Y+G + R IR Y N++ K
Sbjct: 545 KGPHLIVVPASTIDNWLREVNLWCPTLKVLCYYGSQEERKQIR-Y--------NIHSKYE 595
Query: 865 SYKFNVLLTTYEMILA---DSSHLRGVPWEVLVVDEGHRXXXXXXXXXXXXXXXXXQHRV 921
Y NV++TTY ++ D S R + + DEGH +R+
Sbjct: 596 EY--NVIVTTYNCAISSSDDRSLFRRLKLNYAIFDEGHMLKNMGSIRYQHLMTINANNRL 653
Query: 922 LLTGTPLQNNIGEMYNLLNFLQPASFPSLSS-FEEKFNDLTTT---------QKVEELKK 971
LLTGTP+QNN+ E+ +LLNF+ P F S +S F+ T + +++ K+
Sbjct: 654 LLTGTPVQNNLLELMSLLNFVMPHMFSSSTSEIRRMFSSKTKSADEQSIYEKERIAHAKQ 713
Query: 972 LVAPHMLRRLKKDAMQNIPPKTERMVPVELSSIQAEYYRAMLTKNYQILRNIGKGVAQQS 1031
++ P +LRR+K++ ++ +PPK +++ +S Q + Y + + + + NI K
Sbjct: 714 IIKPFILRRVKEEVLKQLPPKKDQIELCAMSEKQEQLYLGLFNRLKKSINNIEKST---E 770
Query: 1032 MLNIVMQLRKVCNHPYL 1048
M N++MQLRK+ NHP L
Sbjct: 771 MCNVMMQLRKMANHPLL 787
Score = 311 (114.5 bits), Expect = 1.7e-66, Sum P(4) = 1.7e-66
Identities = 66/149 (44%), Positives = 99/149 (66%)
Query: 1070 SAKLTLLHSMLKVLYKEGHRVLIFSQMTKLLDILEDYLNIEFGPKTYERVDGSVSVGDRQ 1129
S K +L +L L ++G RV++FSQ T +LDILE L + Y R+DG + +R
Sbjct: 853 SGKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVLL--KHHQHRYLRLDGKTQISERI 910
Query: 1130 AAITRFNQDKSRFVFLLSTRSCGLGINLATADTVIIYDSDFNPHADIQAMNRAHRIGQSK 1189
I FN D FVFLLST++ GLGINL +A+ VI++D D NP+ D QA +R HR+GQ+K
Sbjct: 911 HLIDEFNTDMDIFVFLLSTKAGGLGINLTSANVVILHDIDCNPYNDKQAEDRCHRVGQTK 970
Query: 1190 RLLVYRLVVRASVEERILQLAKKKLMLDQ 1218
+LV +L+ + ++EE +L++ ++KL L+Q
Sbjct: 971 EVLVIKLISQGTIEESMLKINQQKLKLEQ 999
Score = 67 (28.6 bits), Expect = 1.7e-66, Sum P(4) = 1.7e-66
Identities = 38/135 (28%), Positives = 59/135 (43%)
Query: 189 EKSLDSSQVDVSCSTKPENTSAGVPVEGSSSCPNDDDEKQL-NASPTDSLADTKFHPAEE 247
EK + V + + S G+P + S N+DD +L + S + L D K +E
Sbjct: 110 EKKFNKDTVIIVSEPSEDEESQGLP---TMSGRNNDDISELEDLSELEDLKDAKLQTLKE 166
Query: 248 VLPHSQVTKSEQNDEVPVEKHEKSSTNGSSGIKFVLAIGASERD--RKRK------P--- 296
+ P +S+ ND + + E +ST + +L G +E RKRK P
Sbjct: 167 LFPQ----RSD-NDLLKLI--ESTSTMDGAIAAALLMFGDAEGGGPRKRKLSSSSEPYEE 219
Query: 297 -EVKDEDSQKKLRVD 310
E D+ S KK R+D
Sbjct: 220 DEFNDDQSIKKKRLD 234
Score = 47 (21.6 bits), Expect = 8.4e-65, Sum P(3) = 8.4e-65
Identities = 13/50 (26%), Positives = 22/50 (44%)
Query: 33 NGKEENLVTSESPRNTPSAKRRLKNEINADRSSTKKKGNDGYYYECVICD 82
NGKE + + P+N K + K + KK+ + + + VI D
Sbjct: 308 NGKEASSRSQNYPKNAAKTKLKQKCSMKPQNGFNKKRKKNVFNPKRVIED 357
Score = 42 (19.8 bits), Expect = 1.7e-66, Sum P(4) = 1.7e-66
Identities = 11/39 (28%), Positives = 20/39 (51%)
Query: 546 NDKMVVEDADVSLRDNEGLTVSEIHITCESTDKDVDVGK 584
N K V+ED++ + G ++ E + + E +D GK
Sbjct: 350 NPKRVIEDSEYDSGSDVGSSLDEDYSSGEEVMEDGYKGK 388
Score = 40 (19.1 bits), Expect = 5.6e-24, Sum P(3) = 5.6e-24
Identities = 7/20 (35%), Positives = 12/20 (60%)
Query: 555 DVSLRDNEGLTVSEIHITCE 574
D+ D E +T E+H+ C+
Sbjct: 816 DLIFEDMEVMTDFELHVLCK 835
Score = 39 (18.8 bits), Expect = 1.4e-23, Sum P(4) = 1.4e-23
Identities = 8/19 (42%), Positives = 12/19 (63%)
Query: 1057 GSVEFLHEMRIKASAKLTL 1075
GS+ + H M I A+ +L L
Sbjct: 637 GSIRYQHLMTINANNRLLL 655
Score = 37 (18.1 bits), Expect = 5.7e-66, Sum P(4) = 5.7e-66
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 708 LTDLFVQFERQTLKKDASEDELPRGKGDCQQSE 740
L L V E Q ++ AS+ E P GK +S+
Sbjct: 286 LESLKVFAEDQDMQY-ASQSEFPNGKEASSRSQ 317
Score = 37 (18.1 bits), Expect = 9.3e-64, Sum P(3) = 9.3e-64
Identities = 15/64 (23%), Positives = 27/64 (42%)
Query: 190 KSLDSSQVDVSCSTKPENTSAGVPVEGSSSCPND----DDEKQLNASPTDSLADTKFHPA 245
K+ +++ CS KP+N G + + N +D + + S S D +
Sbjct: 321 KNAAKTKLKQKCSMKPQN---GFNKKRKKNVFNPKRVIEDSEYDSGSDVGSSLDEDYSSG 377
Query: 246 EEVL 249
EEV+
Sbjct: 378 EEVM 381
>RGD|1310969 [details] [associations]
symbol:Ino80 "INO80 homolog (S. cerevisiae)" species:10116
"Rattus norvegicus" [GO:0000070 "mitotic sister chromatid
segregation" evidence=ISO] [GO:0000724 "double-strand break repair
via homologous recombination" evidence=ISO] [GO:0003677 "DNA
binding" evidence=IEA;ISO] [GO:0003678 "DNA helicase activity"
evidence=ISO] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO] [GO:0006200 "ATP catabolic process" evidence=ISO]
[GO:0006302 "double-strand break repair" evidence=ISO] [GO:0006338
"chromatin remodeling" evidence=ISO] [GO:0010571 "positive
regulation of DNA replication involved in S phase" evidence=ISO]
[GO:0016887 "ATPase activity" evidence=ISO] [GO:0030307 "positive
regulation of cell growth" evidence=ISO] [GO:0031011 "Ino80
complex" evidence=ISO] [GO:0032508 "DNA duplex unwinding"
evidence=ISO] [GO:0034644 "cellular response to UV" evidence=ISO]
[GO:0043014 "alpha-tubulin binding" evidence=ISO] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=ISO] [GO:0051225 "spindle assembly"
evidence=ISO] [GO:0070914 "UV-damage excision repair" evidence=ISO]
[GO:0071479 "cellular response to ionizing radiation" evidence=ISO]
[GO:2000045 "regulation of G1/S transition of mitotic cell cycle"
evidence=ISO] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF13892
PROSITE:PS51194 PROSITE:PS51413 SMART:SM00490 RGD:1310969
GO:GO:0005524 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GeneTree:ENSGT00680000100052
IPI:IPI00569811 Ensembl:ENSRNOT00000031672 UCSC:RGD:1310969
Uniprot:D4A6Q6
Length = 1553
Score = 400 (145.9 bits), Expect = 3.2e-66, Sum P(4) = 3.2e-66
Identities = 107/328 (32%), Positives = 167/328 (50%)
Query: 747 QPEELKGGALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKAKL 806
QP + G L +QL+ +NWL + + N ILADEMGLGKTV + A ++ L
Sbjct: 512 QPT-IFNGKLKGYQLKGMNWLANLYEQGINGILADEMGLGKTVQSIALLAHLAERENIWG 570
Query: 807 PCLVLVPLSTMPNWLAEFALWAPNLNVVEYHGCAKARAIIRQYEWHASDPDNLNKKTSSY 866
P L++ P ST+ NW EF + P V+ Y G +P + KK + Y
Sbjct: 571 PFLIISPASTLNNWHQEFTRFVPKFKVLPYWG----------------NPHDRKKKKTLY 614
Query: 867 K----FNVLLTTYEMILADSSHLRGVPWEVLVVDEGHRXXXXXXXXXXXXXXXXXQHRVL 922
F+V++T+Y++++ D + + V W+ +V+DE ++R+L
Sbjct: 615 TQDAPFHVVITSYQLVVQDVKYFQRVKWQYMVLDEAQALKSSSSVRWKILLQFQCRNRLL 674
Query: 923 LTGTPLQNNIGEMYNLLNFLQPASFPSLSSFEEKFN-DLTTTQK----VEE-----LKKL 972
LTGTP+QN + E++ LL+F+ P F S F E F+ D+ + + ++E L +
Sbjct: 675 LTGTPIQNTMAELWALLHFIMPTLFDSHEEFNEWFSKDIESHAENKSAIDENQLSRLHMI 734
Query: 973 VAPHMLRRLKKDAMQNIPPKTERMVPVELSSIQAEYYRAMLTK-NYQILRNIGKGVAQQ- 1030
+ P MLRR+KKD + K E ++ +L+S Q Y+A+ K + + L G QQ
Sbjct: 735 LKPFMLRRIKKDVENELSDKIEILMYCQLTSRQKLLYQALKNKISIEDLLQSSMGSTQQA 794
Query: 1031 -----SMLNIVMQLRKVCNHPYLIPGTE 1053
S++N+VMQ RKVCNHP L E
Sbjct: 795 QNTTSSLMNLVMQFRKVCNHPELFERQE 822
Score = 392 (143.0 bits), Expect = 3.2e-66, Sum P(4) = 3.2e-66
Identities = 93/213 (43%), Positives = 130/213 (61%)
Query: 1064 EMRIKASAKLTLLHSMLKVLYKEGHRVLIFSQMTKLLDILEDYLNIEFGPKTYERVDGSV 1123
E I S KL L +L L +GHRVLI+SQMT+++D+LE+Y+ + TY R+DGS
Sbjct: 1091 ESLITDSGKLYALDILLTRLKSQGHRVLIYSQMTRMIDLLEEYM--VYRKHTYMRLDGSS 1148
Query: 1124 SVGDRQAAITRFNQDKSRFVFLLSTRSCGLGINLATADTVIIYDSDFNPHADIQAMNRAH 1183
+ +R+ + F FVFLLSTR+ GLGINL ADTVI YDSD+NP D QAM+RAH
Sbjct: 1149 KISERRDMVADFQTRNDIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTVDQQAMDRAH 1208
Query: 1184 RIGQSKRLLVYRLVVRASVEERILQLAKKKLMLDQLFVNKSGSQKEVEDILRWGTEELFN 1243
R+GQ+K++ VYRL+ + ++EERILQ AK+K + ++ + SG + + + L
Sbjct: 1209 RLGQTKQVTVYRLICKGTIEERILQRAKEKSEIQRMVI--SGGNFKPDTLKPKEVVSLLL 1266
Query: 1244 DSPGINGKDM--GENNTSIEEAVRDLEQKHRKR 1274
D + K E EE+ R E+K RKR
Sbjct: 1267 DDEELEKKLRLRQEEKRQQEESNRVKERK-RKR 1298
Score = 46 (21.3 bits), Expect = 1.5e-29, Sum P(4) = 1.5e-29
Identities = 12/49 (24%), Positives = 22/49 (44%)
Query: 929 QNNIGEMYNL-LNFLQPASFPSLSSFEEKFNDLTTTQKVEELKKLVAPH 976
QN + NL + F + + P L +E ++ + K E+ K + H
Sbjct: 795 QNTTSSLMNLVMQFRKVCNHPELFERQETWSPFHISLKPYEISKFIYRH 843
Score = 44 (20.5 bits), Expect = 3.2e-66, Sum P(4) = 3.2e-66
Identities = 25/107 (23%), Positives = 46/107 (42%)
Query: 633 QLKVLAKRKLENYKAKYGTTVINICDERWKQPQRVISLRSSK---DGTREAFVKWTGLPY 689
Q K ++L+ Y+ Y +++ CD ++Q + ++ + K D +A +K
Sbjct: 173 QNKYSKDKELQQYQY-YSAGLLSTCDPFYEQQRHLLGPKKKKFKEDKKLKAKLKKVKKKR 231
Query: 690 --DECTWEKLDEPALEKYSHLTDLFVQFERQ-----TLKKDASEDEL 729
DE E E + + H T +F +F T KK S ++L
Sbjct: 232 RRDE---EFSSEESPRHHHHQTKVFAKFSHDAPPPGTKKKHLSIEQL 275
Score = 42 (19.8 bits), Expect = 3.2e-66, Sum P(4) = 3.2e-66
Identities = 29/111 (26%), Positives = 45/111 (40%)
Query: 123 NDQLKPISNLDSISKRARSKIITIKSQSGVKSSGADKVSQIFGNSIL-ARKRSNKGKSVL 181
N+ L P S I + + SG SSG + N +L + +S+KG
Sbjct: 58 NNPLLPESGDPLIQVKEEPPNSLLGETSGASSSGLLNPYSL--NGVLQSESKSDKGNLYN 115
Query: 182 ALGVKSLEKSLDSSQVDVSCSTKPENTSAGVPVEGSSSCPNDDDEKQLNAS 232
+K K L S + E++ A S S NDD+E++L+ S
Sbjct: 116 FSKLKKSRKWLKSILLS------DESSEAD-----SQSEDNDDEEEELSLS 155
>SGD|S000003118 [details] [associations]
symbol:INO80 "ATPase and nucleosome spacing factor"
species:4932 "Saccharomyces cerevisiae" [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0006974 "response to DNA damage
stimulus" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA;IMP;IDA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0016568 "chromatin modification"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0042766 "nucleosome mobilization" evidence=IMP] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IMP] [GO:0043486 "histone exchange"
evidence=IDA] [GO:0043140 "ATP-dependent 3'-5' DNA helicase
activity" evidence=IDA] [GO:0016817 "hydrolase activity, acting on
acid anhydrides" evidence=IEA] [GO:0006338 "chromatin remodeling"
evidence=IDA] [GO:0016887 "ATPase activity" evidence=IDA]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=IMP;IDA] [GO:0006348 "chromatin silencing at telomere"
evidence=IMP] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0043618 "regulation of transcription from RNA polymerase II
promoter in response to stress" evidence=IMP] [GO:0016584
"nucleosome positioning" evidence=IDA] [GO:0031011 "Ino80 complex"
evidence=IDA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF13892
PROSITE:PS51194 PROSITE:PS51413 SMART:SM00490 SGD:S000003118
GO:GO:0005524 EMBL:BK006941 GO:GO:0003677 GO:GO:0006281
GO:GO:0045944 GO:GO:0016887 GO:GO:0006366 GO:GO:0031011
GO:GO:0006348 GO:GO:0004386 GO:GO:0043486 GO:GO:0042766 EMBL:Z48618
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
EMBL:X99960 GO:GO:0016584 GO:GO:0043618 KO:K11665
GeneTree:ENSGT00680000100052 HOGENOM:HOG000048482 OrthoDB:EOG41G6C8
EMBL:Z72672 PIR:S60416 RefSeq:NP_011365.1 ProteinModelPortal:P53115
SMR:P53115 DIP:DIP-1386N IntAct:P53115 MINT:MINT-388693
STRING:P53115 PaxDb:P53115 PeptideAtlas:P53115 EnsemblFungi:YGL150C
GeneID:852728 KEGG:sce:YGL150C CYGD:YGL150c OMA:DEFSDWF
NextBio:972117 Genevestigator:P53115 GermOnline:YGL150C
Uniprot:P53115
Length = 1489
Score = 399 (145.5 bits), Expect = 5.8e-66, Sum P(3) = 5.8e-66
Identities = 99/315 (31%), Positives = 170/315 (53%)
Query: 721 KKDASEDELPRGKGDCQQSEIVALTEQPEELKGGALFPHQLEALNWLRKCWHKSKNVILA 780
+++ EDEL + EI EQP+ L L +QL+ LNWL + + N ILA
Sbjct: 675 EEEEEEDEL-NFQNPTSLGEITI--EQPKIL-ACTLKEYQLKGLNWLANLYDQGINGILA 730
Query: 781 DEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLSTMPNWLAEFALWAPNLNVVEYHGCA 840
DEMGLGKTV + + ++ L P LV+ P ST+ NW+ E + + P ++ Y G A
Sbjct: 731 DEMGLGKTVQSISVLAHLAENHNIWGPFLVVTPASTLHNWVNEISKFLPQFKILPYWGNA 790
Query: 841 KARAIIRQYEWHASDPDNLNKKTSSYKFNVLLTTYEMILADSSHLRGVPWEVLVVDEGHR 900
R ++R++ W D NL ++ F+V++T+Y+M++ D+++L+ + W+ +++DE
Sbjct: 791 NDRKVLRKF-W---DRKNLRYNKNA-PFHVMVTSYQMVVTDANYLQKMKWQYMILDEAQA 845
Query: 901 XXXXXXXXXXXXXXXXXQHRVLLTGTPLQNNIGEMYNLLNFLQPASFPSLSSFEEKFN-D 959
++R+LLTGTP+QN++ E++ LL+F+ P+ F S F E F+ D
Sbjct: 846 IKSSQSSRWKNLLSFHCRNRLLLTGTPIQNSMQELWALLHFIMPSLFDSHDEFNEWFSKD 905
Query: 960 LTT---------TQKVEELKKLVAPHMLRRLKKDAMQNIPPKTERMVPVELSSIQAEYYR 1010
+ + Q++ L ++ P MLRR+KK+ + K E V +L+ QA+ Y+
Sbjct: 906 IESHAEANTKLNQQQLRRLHMILKPFMLRRVKKNVQSELGDKIEIDVLCDLTQRQAKLYQ 965
Query: 1011 AM---LTKNYQILRN 1022
+ ++ NY + N
Sbjct: 966 VLKSQISTNYDAIEN 980
Score = 378 (138.1 bits), Expect = 5.8e-66, Sum P(3) = 5.8e-66
Identities = 79/167 (47%), Positives = 113/167 (67%)
Query: 1067 IKASAKLTLLHSMLKVLYKEGHRVLIFSQMTKLLDILEDYLNIEFGPKTYERVDGSVSVG 1126
I SAKL L +L L EGHRVLI+ QMTK++D++E+YL + + R+DGS +
Sbjct: 1295 ITESAKLRKLDELLVKLKSEGHRVLIYFQMTKMMDLMEEYLT--YRQYNHIRLDGSSKLE 1352
Query: 1127 DRQAAITRFNQDKSRFVFLLSTRSCGLGINLATADTVIIYDSDFNPHADIQAMNRAHRIG 1186
DR+ + + + FVFLLSTR+ GLGINL ADTVI YDSD+NP D QAM+RAHR+G
Sbjct: 1353 DRRDLVHDWQTNPEIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTIDSQAMDRAHRLG 1412
Query: 1187 QSKRLLVYRLVVRASVEERILQLAKKKLMLDQLFVNKSGSQKEVEDI 1233
Q++++ VYRL+VR ++EER+ AK+K + Q+ + +K ++ I
Sbjct: 1413 QTRQVTVYRLLVRGTIEERMRDRAKQKEQVQQVVMEGKTQEKNIKTI 1459
Score = 134 (52.2 bits), Expect = 4.1e-38, Sum P(4) = 4.1e-38
Identities = 35/112 (31%), Positives = 55/112 (49%)
Query: 958 NDLTTTQKVEELKKLVAPHMLRRLKKDAMQNIPPKTERMVPVELSSIQAEYYRAM---LT 1014
N Q++ L ++ P MLRR+KK+ + K E V +L+ QA+ Y+ + ++
Sbjct: 913 NTKLNQQQLRRLHMILKPFMLRRVKKNVQSELGDKIEIDVLCDLTQRQAKLYQVLKSQIS 972
Query: 1015 KNYQILRNIG----------KGVAQQSMLNIVMQLRKVCNHPYLIPGTEPDS 1056
NY + N + Q+++N VMQ RKVCNHP L + DS
Sbjct: 973 TNYDAIENAATNDSTSNSASNSGSDQNLINAVMQFRKVCNHPDLFERADVDS 1024
Score = 53 (23.7 bits), Expect = 1.1e-65, Sum P(4) = 1.1e-65
Identities = 17/67 (25%), Positives = 29/67 (43%)
Query: 215 EGSSSCPNDDDEKQLNASPTDSLADTKFHPAEEVLPHSQVTKSEQNDEVP-VEKHEKSST 273
E + NDD+E+ N + + + E+ + ++ D P VEK K S+
Sbjct: 244 ENDNDSDNDDEEE--NGEEDEEEEEIEDLDEEDFAAFEEQDDNDDEDFNPDVEKRRKRSS 301
Query: 274 NGSSGIK 280
+ SS K
Sbjct: 302 SSSSSTK 308
Score = 52 (23.4 bits), Expect = 1.4e-65, Sum P(4) = 1.4e-65
Identities = 22/99 (22%), Positives = 39/99 (39%)
Query: 173 RSNKGKSVLALGVKSLEKSLDSSQVDVSCSTKPENTSAG--VPVEGSSSCPNDDDEKQLN 230
R GKS+ G++ K ++ + + K + T A V V G + ++ E + N
Sbjct: 168 RHTNGKSMRGNGIQKSRKKDAAAAAAIGKAIKDDQTHADTVVTVNGDENEDGNNGEDEDN 227
Query: 231 ASPTDSLADTKFHPAEEVLPHSQVTKSEQNDEVPVEKHE 269
+ ++ D E S E+N E E+ E
Sbjct: 228 DNDNENNNDNDNDNENENDNDSDNDDEEENGEEDEEEEE 266
Score = 48 (22.0 bits), Expect = 5.8e-66, Sum P(3) = 5.8e-66
Identities = 14/54 (25%), Positives = 23/54 (42%)
Query: 490 QVYR--RSVTKECKVTKECKGENAIDLLREDDKDSDPVAVNGKVQDESAVSTED 541
++YR + KE + K N D++ E D D D +++D ED
Sbjct: 109 KLYRDMSMINKEWAEYQSFKNANLSDIINEKDADEDEEDDEDELEDGEEDMEED 162
Score = 48 (22.0 bits), Expect = 5.8e-66, Sum P(3) = 5.8e-66
Identities = 34/166 (20%), Positives = 66/166 (39%)
Query: 577 DKDV-DVGKKTSGSVAKRVQEPAVTESAQVKGKAVSYEFLVKWVGKSNIHNSWIPESQLK 635
DKD+ D K T+G AK+ V + A + +L S + NS + +
Sbjct: 11 DKDISDFSKTTAGKSAKKNSRERVADVAPTRVLDKKQAYL------SQL-NSEFNRIKRR 63
Query: 636 VLAKRKLENYKAKYGTTVINICDERWKQPQRVISLRSSKDGTREAFVK-WTGLPYDECTW 694
++ +++K + E W Q + ++ D F K + + W
Sbjct: 64 DSIEQLYQDWKF-INLQEFELISE-WNQQSKDWQFDNTNDSQDLHFKKLYRDMSMINKEW 121
Query: 695 EKLDEPALEKYSHLTDLFVQFERQTLKKDASEDELPRGKGDCQQSE 740
+ K ++L+D+ + + ++D EDEL G+ D ++ E
Sbjct: 122 AEYQS---FKNANLSDIINEKDADEDEED-DEDELEDGEEDMEEDE 163
Score = 48 (22.0 bits), Expect = 3.5e-65, Sum P(4) = 3.5e-65
Identities = 19/106 (17%), Positives = 38/106 (35%)
Query: 165 GNSIL-ARKRSNKGKSVLALGVKSLEKSLDSSQVDVSCSTKPENTSAGVPVEGSSSCPND 223
GN I +RK+ + + +K + D+ + N + + ND
Sbjct: 177 GNGIQKSRKKDAAAAAAIGKAIKDDQTHADTVVTVNGDENEDGNNGEDEDNDNDNENNND 236
Query: 224 DDEKQLNASPTDSLADTKFHPAEEVLPHSQVTKSEQNDEVPVEKHE 269
+D N + DS D + EE ++ ++ D E+ +
Sbjct: 237 NDNDNENENDNDSDNDDEEENGEEDEEEEEIEDLDEEDFAAFEEQD 282
Score = 46 (21.3 bits), Expect = 2.8e-65, Sum P(4) = 2.8e-65
Identities = 17/87 (19%), Positives = 33/87 (37%)
Query: 223 DDDEKQLNASPTDSLAD---TKFHPAEEVLPHSQVTKSEQNDEVPVEKHEKSSTNGSSGI 279
+DDE +L D D T H + + + + KS + D K+ + +
Sbjct: 146 EDDEDELEDGEEDMEEDEASTGRHTNGKSMRGNGIQKSRKKDAAAAAAIGKAIKDDQTHA 205
Query: 280 KFVLAIGASERDRKRKPEVKDEDSQKK 306
V+ + E + E +D D+ +
Sbjct: 206 DTVVTVNGDENEDGNNGEDEDNDNDNE 232
Score = 45 (20.9 bits), Expect = 2.8e-65, Sum P(4) = 2.8e-65
Identities = 18/82 (21%), Positives = 31/82 (37%)
Query: 508 GENAIDLLREDDKDSDPVAVNGKVQDESAVSTEDLGERNDKMVVEDADVSLRDNEGLTVS 567
G N D ++D +++ N + S D E N + E+ ++ D E
Sbjct: 219 GNNGEDEDNDNDNENNNDNDNDNENENDNDSDNDDEEENGEEDEEEEEIEDLDEEDFAAF 278
Query: 568 EIHITCESTDKDVDVGKKTSGS 589
E + D + DV K+ S
Sbjct: 279 EEQDDNDDEDFNPDVEKRRKRS 300
Score = 42 (19.8 bits), Expect = 1.1e-65, Sum P(4) = 1.1e-65
Identities = 14/52 (26%), Positives = 28/52 (53%)
Query: 443 NKILEENLACDTDLDAEVT------ENLAELSPNVIRSSD-EECMKNDIGVD 487
N I+ + D+ L+ ++T + L +L + R + EE +KN++G+D
Sbjct: 358 NCIVTDYNPIDSKLNIKITLKQYHVKRLKKLINDAKREREREEALKNNVGLD 409
Score = 42 (19.8 bits), Expect = 3.1e-64, Sum P(4) = 3.1e-64
Identities = 11/41 (26%), Positives = 20/41 (48%)
Query: 118 KCTQKNDQLKPISNLDSISKRARSKIITIKSQSGVKSSGAD 158
K T K +K + L + +KR R + +K+ G+ + D
Sbjct: 374 KITLKQYHVKRLKKLINDAKREREREEALKNNVGLDGNDLD 414
Score = 41 (19.5 bits), Expect = 3.8e-28, Sum P(4) = 3.8e-28
Identities = 12/37 (32%), Positives = 21/37 (56%)
Query: 954 EEKFN-DLTTTQ-KVEELKKLVAPHMLRRLKKDAMQN 988
+ K N +T Q V+ LKKL+ R +++A++N
Sbjct: 368 DSKLNIKITLKQYHVKRLKKLINDAKREREREEALKN 404
Score = 40 (19.1 bits), Expect = 4.0e-65, Sum P(3) = 4.0e-65
Identities = 33/152 (21%), Positives = 54/152 (35%)
Query: 416 DTSSSCHISATATDDRHSDDFLVSENHNKILEENLACDTDLDAEVTENLAELSPNVIRSS 475
D +++ I DD+ D +V+ N ++ + N D D D + EN N +
Sbjct: 187 DAAAAAAIGKAIKDDQTHADTVVTVNGDENEDGNNGEDEDNDND-NEN------NNDNDN 239
Query: 476 DEECMKNDIGVDRIQVYRRSVTKECKVTKECKGENAIDLLREDDKDSDPVAVNGKVQDES 535
D E +ND D E + E E E D D+D N V+
Sbjct: 240 DNE-NENDNDSDNDDEEENGEEDEEEEEIEDLDEEDFAAFEEQD-DNDDEDFNPDVEKRR 297
Query: 536 AVSTEDLGERNDKMVVEDADVSLRDNEGLTVS 567
S+ M S + N+ +T++
Sbjct: 298 KRSSSSSSSTKLSMNSLSLITSKKINKNITIN 329
Score = 39 (18.8 bits), Expect = 2.2e-65, Sum P(4) = 2.2e-65
Identities = 10/20 (50%), Positives = 12/20 (60%)
Query: 466 ELSPNVIRSSDEECMKN-DI 484
EL N + S+D E KN DI
Sbjct: 603 ELEGNNVSSNDSESQKNIDI 622
Score = 39 (18.8 bits), Expect = 1.2e-28, Sum P(2) = 1.2e-28
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 37 ENLVTSESPRNTPSAKRRLKNEINA 61
EN T++S N+ S +N INA
Sbjct: 979 ENAATNDSTSNSASNSGSDQNLINA 1003
Score = 37 (18.1 bits), Expect = 8.2e-65, Sum P(3) = 8.2e-65
Identities = 9/38 (23%), Positives = 17/38 (44%)
Query: 528 NGKVQDESAVSTEDLGERNDKMVVEDADVSLRDNEGLT 565
N + D D E +D+ +ED + + ++E T
Sbjct: 129 NANLSDIINEKDADEDEEDDEDELEDGEEDMEEDEAST 166
Score = 37 (18.1 bits), Expect = 2.1e-30, Sum P(4) = 2.1e-30
Identities = 7/21 (33%), Positives = 13/21 (61%)
Query: 1114 KTYERVDGSVSVGDRQAAITR 1134
KT E+ ++ VG+ + +TR
Sbjct: 1450 KTQEKNIKTIEVGENDSEVTR 1470
>ZFIN|ZDB-GENE-091113-61 [details] [associations]
symbol:si:dkey-76p7.6 "si:dkey-76p7.6" species:7955
"Danio rerio" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0000729 "DNA double-strand break processing" evidence=ISS]
[GO:0035861 "site of double-strand break" evidence=ISS] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=ISS] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0016568 "chromatin modification" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006974 "response to DNA
damage stimulus" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0005694 "chromosome" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR003892
InterPro:IPR009060 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51140
PROSITE:PS51194 SMART:SM00490 ZFIN:ZDB-GENE-091113-61 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0043044 SUPFAM:SSF46934
GO:GO:0000729 GO:GO:0035861 GeneTree:ENSGT00630000089890
EMBL:BX927385 IPI:IPI00901431 Ensembl:ENSDART00000113101
Bgee:E7F1C4 Uniprot:E7F1C4
Length = 954
Score = 425 (154.7 bits), Expect = 6.0e-66, Sum P(3) = 6.0e-66
Identities = 126/383 (32%), Positives = 201/383 (52%)
Query: 693 TWEKLDEPALEKYSHLTDLFVQFERQTLKKDASEDELPRG-KGDCQQSEIVALTE----- 746
TW+ LD+ A+ + + L+ + R+ LK E E+ +G C++ + + +
Sbjct: 356 TWKDLDD-AMRRRNGLSAELLAGCREVLK----EREVVKGLMSKCEEISVKLIQDVTQVM 410
Query: 747 --------QPEELKGG-ALFPHQLEALNWLRKCWHKSK-NVILADEMGLGKTVSACAFIS 796
QPE L L P+QL LNWL H++K + ILADEMGLGKT+ A +F++
Sbjct: 411 DKGPGSMTQPEILSSTFQLKPYQLIGLNWL-VLLHQNKLSGILADEMGLGKTIQAISFLA 469
Query: 797 SLYCEFKAKLPCLVLVPLSTMPNWLAEFALWAPNLNVVEYHGCAKARAIIRQYEWHASDP 856
LY E P L+ VP ST+ NW+ E LW P+ V+ Y+G A R +R YE
Sbjct: 470 HLYQEGNHG-PHLITVPASTLDNWVRELNLWCPSFKVLVYYGSADDRKYMR-YEI----- 522
Query: 857 DNLNKKTSSYKFNVLLTTYEMILADSSHLR---GVPWEVLVVDEGHRXXXXXXXXXXXXX 913
LN+ ++N++++TY + + +SS + E V DEGH
Sbjct: 523 --LNQIV---EYNIIVSTYNLAIGNSSDRSLFCKLKLEYAVFDEGHLLKNMNSLRYRHLM 577
Query: 914 XXXXQHRVLLTGTPLQNNIGEMYNLLNFLQPASFPSLSS-----FEEKFNDLTTT---QK 965
++R+LLTGTPLQNN+ E+ +LLNF+ P F S +S F K ++ ++ +
Sbjct: 578 AINAKYRLLLTGTPLQNNLLELMSLLNFIMPNMFSSSTSQIAKMFSMKSSEEQSSFERDR 637
Query: 966 VEELKKLVAPHMLRRLKKDAMQNIPPKTERMVPVELSSIQAEYYRAMLTKNYQILRNIGK 1025
+ K ++ P +LRR+K + ++ +P K E++ +S Q E Y A+L K L++
Sbjct: 638 ITHAKLIMKPFILRRVKSEVLKQLPAKEEQVEFCAMSERQQELYSALLHK----LKHSSN 693
Query: 1026 GVAQQSMLNIVMQLRKVCNHPYL 1048
G ++ + N++MQLRK+ NHP L
Sbjct: 694 G-EKRELTNVMMQLRKMSNHPLL 715
Score = 341 (125.1 bits), Expect = 6.0e-66, Sum P(3) = 6.0e-66
Identities = 75/177 (42%), Positives = 113/177 (63%)
Query: 1062 LHEMRIKA-----SAKLTLLHSMLKVLYKEGHRVLIFSQMTKLLDILEDYLNIEFGPKTY 1116
LHE ++ S KL+LL +L L ++G RV++FSQ T +LDILE +L Y
Sbjct: 768 LHEYQLNTDVLLDSGKLSLLTQLLNSLKEKGDRVVLFSQFTMMLDILEVFLRHH--KHRY 825
Query: 1117 ERVDGSVSVGDRQAAITRFNQDKSRFVFLLSTRSCGLGINLATADTVIIYDSDFNPHADI 1176
R+DGS + DR I +FN D+ FVFLLSTR+ GLGINL +A+ VI++D D NP+ D
Sbjct: 826 NRLDGSTPMSDRIGLIDQFNTDQDIFVFLLSTRAGGLGINLTSANVVILHDIDCNPYNDK 885
Query: 1177 QAMNRAHRIGQSKRLLVYRLVVRASVEERILQLAKKKLMLDQ-LFVNKSGSQKEVED 1232
QA R HR+GQ+K + V +L+ + S+E+ +L++ ++KL L+Q + + G + + D
Sbjct: 886 QAEGRCHRVGQTKTVKVIKLISKDSIEDTMLRIGERKLKLEQEMTATQDGEEDTLPD 942
Score = 47 (21.6 bits), Expect = 6.0e-66, Sum P(3) = 6.0e-66
Identities = 17/68 (25%), Positives = 25/68 (36%)
Query: 495 SVTKECKVTKECKGENAIDLLREDDKDSDPVAVNGKVQDESAVSTEDLGERNDKMVVEDA 554
SV E TK G + + + D DSD ++ S + L R K
Sbjct: 21 SVIPETPETKRPSGSSLSTAISDSDSDSD-----SEISGSSMMPVRKLRPRKRKAASSAD 75
Query: 555 DVSLRDNE 562
+ S+ D E
Sbjct: 76 EYSVSDEE 83
Score = 43 (20.2 bits), Expect = 3.7e-65, Sum P(4) = 3.7e-65
Identities = 11/59 (18%), Positives = 26/59 (44%)
Query: 150 SGVKSSGADKVSQIFGNSILARKRSNKGKSVLALGVKSLEKSLDSSQVDVSCSTKPENT 208
+ + S +D S+I G+S++ ++ K A S + ++ V +P ++
Sbjct: 39 TAISDSDSDSDSEISGSSMMPVRKLRPRKRKAASSADEYSVSDEEEEIVVKTKRRPTHS 97
Score = 42 (19.8 bits), Expect = 3.7e-65, Sum P(4) = 3.7e-65
Identities = 10/28 (35%), Positives = 15/28 (53%)
Query: 517 EDDKDSDPVAVNGKVQDESAVSTEDLGE 544
E+ DS+ VNG + +S S E L +
Sbjct: 290 EECSDSEASVVNGLLDSDSDQSEETLSK 317
Score = 37 (18.1 bits), Expect = 5.1e-25, Sum P(3) = 5.1e-25
Identities = 14/59 (23%), Positives = 24/59 (40%)
Query: 691 ECTWEKLDEPALEKYSHLTDLFVQFERQTLKKDASEDELPRGKGDCQQSEIVALTEQPE 749
E W L + ALE +DL V+ E + + R Q+++ L+ P+
Sbjct: 202 EHDW--LIDDALETLRMFSDLVVESEDDSSQTSTPAKHTRRVAETRPQAQVTKLSSPPK 258
>TAIR|locus:2051678 [details] [associations]
symbol:ETL1 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA;ISS] [GO:0004386 "helicase activity"
evidence=IEA;ISS] [GO:0005524 "ATP binding" evidence=IEA;ISS]
[GO:0005634 "nucleus" evidence=ISM] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0003677 GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:AC005936 HOGENOM:HOG000172362
KO:K14439 EMBL:AY059857 EMBL:BT002576 IPI:IPI00520453 PIR:H84432
RefSeq:NP_178318.1 UniGene:At.13358 ProteinModelPortal:Q9ZUL5
SMR:Q9ZUL5 IntAct:Q9ZUL5 PaxDb:Q9ZUL5 PRIDE:Q9ZUL5
EnsemblPlants:AT2G02090.1 GeneID:814740 KEGG:ath:AT2G02090
TAIR:At2g02090 InParanoid:Q9ZUL5 OMA:CAKISAD PhylomeDB:Q9ZUL5
ProtClustDB:CLSN2683669 ArrayExpress:Q9ZUL5 Genevestigator:Q9ZUL5
Uniprot:Q9ZUL5
Length = 763
Score = 387 (141.3 bits), Expect = 6.2e-66, Sum P(3) = 6.2e-66
Identities = 85/164 (51%), Positives = 111/164 (67%)
Query: 1062 LHEMRIKASAKLTLLHSMLKVLYKEGHRVLIFSQMTKLLDILEDYLNIEFGPKTYERVDG 1121
L + + SAK L +L + K GHRVLIFSQ T +LDILE L++ G TY R+DG
Sbjct: 579 LSDKHVMLSAKCRTLAELLPSMKKSGHRVLIFSQWTSMLDILEWTLDV-IGV-TYRRLDG 636
Query: 1122 SVSVGDRQAAITRFNQDKSRFVFLLSTRSCGLGINLATADTVIIYDSDFNPHADIQAMNR 1181
S V DRQ + FN DKS F LLSTR+ G G+NL ADTVII+D DFNP D QA +R
Sbjct: 637 STQVTDRQTIVDTFNNDKSIFACLLSTRAGGQGLNLTGADTVIIHDMDFNPQIDRQAEDR 696
Query: 1182 AHRIGQSKRLLVYRLVVRASVEERILQLAKKKLMLDQLFVNKSG 1225
HRIGQ+K + ++RLV +++V+E I ++AK+KL+LD V +SG
Sbjct: 697 CHRIGQTKPVTIFRLVTKSTVDENIYEIAKRKLVLDAA-VLESG 739
Score = 364 (133.2 bits), Expect = 6.2e-66, Sum P(3) = 6.2e-66
Identities = 97/316 (30%), Positives = 157/316 (49%)
Query: 756 LFPHQLEALNWLRKCWHKS-KNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPL 814
L P+QL +N+L + K + ILADEMGLGKT+ A +++ L P LV+ P
Sbjct: 213 LKPYQLVGVNFLLLLYKKGIEGAILADEMGLGKTIQAITYLTLLSRLNNDPGPHLVVCPA 272
Query: 815 STMPNWLAEFALWAPNLNVVEYHGCAKARAIIRQYEWHASDPDNLNKKTSSYKFNVLLTT 874
S + NW E W P+ V++YHG A+A ++ + ++L+K FNVLL
Sbjct: 273 SVLENWERELRKWCPSFTVLQYHGAARAA--------YSRELNSLSKAGKPPPFNVLLVC 324
Query: 875 YEMILADSSH-------LRGVPWEVLVVDEGH--RXXXXXXXXXXXXXXXXXQHRVLLTG 925
Y + S L+ W +++DE H + R++LTG
Sbjct: 325 YSLFERHSEQQKDDRKVLKRWRWSCVLMDEAHALKDKNSYRWKNLMSVARNANQRLMLTG 384
Query: 926 TPLQNNIGEMYNLLNFLQPASFPSLSSFEEKFNDLTTTQKVEELKKLVAPHMLRRLKKDA 985
TPLQN++ E+++LL F+ P F + + +K + T+ + +K ++ P +LRRLK D
Sbjct: 385 TPLQNDLHELWSLLEFMLPDIFTTENVDLKKLLNAEDTELITRMKSILGPFILRRLKSDV 444
Query: 986 MQNIPPKTERMVPVELSSIQAEYYR-----------AMLTK-NYQILRNIGKGVAQQSML 1033
MQ + PK +R+ V + Q + Y+ A L K + + L ++ K + ++ +
Sbjct: 445 MQQLVPKIQRVEYVLMERKQEDAYKEAIEEYRAASQARLVKLSSKSLNSLAKALPKRQIS 504
Query: 1034 NIVMQLRKVCNHPYLI 1049
N Q RK+ NHP LI
Sbjct: 505 NYFTQFRKIANHPLLI 520
Score = 57 (25.1 bits), Expect = 6.2e-66, Sum P(3) = 6.2e-66
Identities = 21/96 (21%), Positives = 37/96 (38%)
Query: 475 SDEECMKNDIGVDRIQVYRRSVTKECKVTKECKGENAIDLLREDDKDSDPVAVNGKVQDE 534
S+EE ++ R+ R+ K T + R S + + D
Sbjct: 9 SEEEWSQHSFNASRVLKRPRTPKKTRAATNPTPSIESFAFRRP----STAMTIESNSSDG 64
Query: 535 SAVSTEDLGERN-DKMVVEDADVSLRDNEGLTVSEI 569
V EDLG+ + D +V D+ L D E + +++
Sbjct: 65 DCVEIEDLGDSDSDVKIVNGEDLLLEDEEEVEETKV 100
Score = 46 (21.3 bits), Expect = 9.3e-33, Sum P(3) = 9.3e-33
Identities = 19/58 (32%), Positives = 28/58 (48%)
Query: 592 KRVQEPAVTESAQVKGKAVSYEFLVKWVGKSNIHNSWIPESQLKVLAKRKLENYKAKY 649
+R QE A E+ + + +A S LVK KS S K L KR++ NY ++
Sbjct: 461 ERKQEDAYKEAIE-EYRAASQARLVKLSSKSL-------NSLAKALPKRQISNYFTQF 510
Score = 41 (19.5 bits), Expect = 2.9e-64, Sum P(3) = 2.9e-64
Identities = 29/117 (24%), Positives = 52/117 (44%)
Query: 117 PKCTQKNDQLKPISNLDSISKRARSKIITIKSQSGVKSSGADKVS-QIFGNSILARKRSN 175
PK T+ P +++S + R S +TI+S S S D V + G+S K N
Sbjct: 30 PKKTRA--ATNPTPSIESFAFRRPSTAMTIESNS----SDGDCVEIEDLGDSDSDVKIVN 83
Query: 176 KGKSVLALGVKSLEKSLDSSQVDVSCSTKPENTSAGVPVEGSSSCPNDDDEKQLNAS 232
G+ +L E+ ++ ++V + + +E + +DDDE + +AS
Sbjct: 84 -GEDLLLED----EEEVEETKVVMRAA----RVGRRFVIEDEEASDDDDDEAESSAS 131
Score = 37 (18.1 bits), Expect = 1.1e-30, Sum P(3) = 1.1e-30
Identities = 9/29 (31%), Positives = 15/29 (51%)
Query: 31 LSNGKEENLVTSESPRNTPSAKRRLKNEI 59
L N ++ L+T P RRLK+++
Sbjct: 416 LLNAEDTELITRMKSILGPFILRRLKSDV 444
>UNIPROTKB|Q9H4L7 [details] [associations]
symbol:SMARCAD1 "SWI/SNF-related matrix-associated
actin-dependent regulator of chromatin subfamily A containing
DEAD/H box 1" species:9606 "Homo sapiens" [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0009117 "nucleotide metabolic process" evidence=NAS]
[GO:0003676 "nucleic acid binding" evidence=NAS] [GO:0016363
"nuclear matrix" evidence=NAS] [GO:0051260 "protein
homooligomerization" evidence=NAS] [GO:0000018 "regulation of DNA
recombination" evidence=IEP] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=NAS] [GO:0016568 "chromatin
modification" evidence=NAS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0003677 "DNA binding" evidence=IDA] [GO:0000729
"DNA double-strand break processing" evidence=IMP] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=IMP] [GO:0035861
"site of double-strand break" evidence=IDA] [GO:0043596 "nuclear
replication fork" evidence=IDA] [GO:0006338 "chromatin remodeling"
evidence=NAS] [GO:0051304 "chromosome separation" evidence=IMP]
[GO:0070932 "histone H3 deacetylation" evidence=IMP] [GO:0070933
"histone H4 deacetylation" evidence=IMP] [GO:0000792
"heterochromatin" evidence=ISS] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR003892 InterPro:IPR009060
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51140 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0045893 GO:GO:0003677
GO:GO:0009117 GO:GO:0051260 GO:GO:0043596 GO:GO:0004386
GO:GO:0016363 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0043044 SUPFAM:SSF46934 GO:GO:0000792
GO:GO:0070932 GO:GO:0070933 GO:GO:0000729 GO:GO:0000018
HOGENOM:HOG000172362 GO:GO:0035861 KO:K14439 GO:GO:0051304
OMA:KNQRGIQ EMBL:AY008271 EMBL:AB032948 EMBL:AK023990 EMBL:AK027490
EMBL:AK301668 EMBL:AC096746 EMBL:BC017953 EMBL:BC045534
EMBL:AL359929 EMBL:AL512768 IPI:IPI00008422 IPI:IPI00220119
RefSeq:NP_001121901.1 RefSeq:NP_001121902.1 RefSeq:NP_001241878.1
RefSeq:NP_064544.2 UniGene:Hs.410406 ProteinModelPortal:Q9H4L7
SMR:Q9H4L7 STRING:Q9H4L7 PhosphoSite:Q9H4L7 DMDM:306526240
PaxDb:Q9H4L7 PRIDE:Q9H4L7 DNASU:56916 Ensembl:ENST00000354268
Ensembl:ENST00000359052 Ensembl:ENST00000457823
Ensembl:ENST00000509418 GeneID:56916 KEGG:hsa:56916 UCSC:uc003htb.4
UCSC:uc003htc.4 CTD:56916 GeneCards:GC04P095128 H-InvDB:HIX0004380
HGNC:HGNC:18398 HPA:HPA016737 MIM:136000 MIM:612761
neXtProt:NX_Q9H4L7 Orphanet:289465 PharmGKB:PA134954731
HOVERGEN:HBG055804 ChiTaRS:SMARCAD1 GenomeRNAi:56916 NextBio:62407
ArrayExpress:Q9H4L7 Bgee:Q9H4L7 CleanEx:HS_SMARCAD1
Genevestigator:Q9H4L7 GermOnline:ENSG00000163104 Uniprot:Q9H4L7
Length = 1026
Score = 436 (158.5 bits), Expect = 2.9e-65, Sum P(4) = 2.9e-65
Identities = 110/317 (34%), Positives = 165/317 (52%)
Query: 746 EQPEELKGG-ALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKA 804
EQP L +L P+Q LNWL N ILADEMGLGKT+ A AF++ LY E
Sbjct: 486 EQPSILNQSLSLKPYQKVGLNWLALVHKHGLNGILADEMGLGKTIQAIAFLAYLYQEGNN 545
Query: 805 KLPCLVLVPLSTMPNWLAEFALWAPNLNVVEYHGCAKARAIIRQYEWHASDPDNLNKKTS 864
P L++VP ST+ NWL E LW P L V+ Y+G + R IR N++ +
Sbjct: 546 G-PHLIVVPASTIDNWLREVNLWCPTLKVLCYYGSQEERKQIRF---------NIHSRYE 595
Query: 865 SYKFNVLLTTYEMILA---DSSHLRGVPWEVLVVDEGHRXXXXXXXXXXXXXXXXXQHRV 921
Y NV++TTY ++ D S R + + DEGH +R+
Sbjct: 596 DY--NVIVTTYNCAISSSDDRSLFRRLKLNYAIFDEGHMLKNMGSIRYQHLMTINANNRL 653
Query: 922 LLTGTPLQNNIGEMYNLLNFLQPASFPSLSS-FEEKFNDLTTT---------QKVEELKK 971
LLTGTP+QNN+ E+ +LLNF+ P F S +S F+ T + +++ K+
Sbjct: 654 LLTGTPVQNNLLELMSLLNFVMPHMFSSSTSEIRRMFSSKTKSADEQSIYEKERIAHAKQ 713
Query: 972 LVAPHMLRRLKKDAMQNIPPKTERMVPVELSSIQAEYYRAMLTKNYQILRNIGKGVAQQS 1031
++ P +LRR+K++ ++ +PPK +R+ +S Q + Y + + + + N+ K
Sbjct: 714 IIKPFILRRVKEEVLKQLPPKKDRIELCAMSEKQEQLYLGLFNRLKKSINNLEKNT---E 770
Query: 1032 MLNIVMQLRKVCNHPYL 1048
M N++MQLRK+ NHP L
Sbjct: 771 MCNVMMQLRKMANHPLL 787
Score = 311 (114.5 bits), Expect = 2.9e-65, Sum P(4) = 2.9e-65
Identities = 66/149 (44%), Positives = 99/149 (66%)
Query: 1070 SAKLTLLHSMLKVLYKEGHRVLIFSQMTKLLDILEDYLNIEFGPKTYERVDGSVSVGDRQ 1129
S K +L +L L ++G RV++FSQ T +LDILE L + Y R+DG + +R
Sbjct: 853 SGKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVLL--KHHQHRYLRLDGKTQISERI 910
Query: 1130 AAITRFNQDKSRFVFLLSTRSCGLGINLATADTVIIYDSDFNPHADIQAMNRAHRIGQSK 1189
I FN D FVFLLST++ GLGINL +A+ VI++D D NP+ D QA +R HR+GQ+K
Sbjct: 911 HLIDEFNTDMDIFVFLLSTKAGGLGINLTSANVVILHDIDCNPYNDKQAEDRCHRVGQTK 970
Query: 1190 RLLVYRLVVRASVEERILQLAKKKLMLDQ 1218
+LV +L+ + ++EE +L++ ++KL L+Q
Sbjct: 971 EVLVIKLISQGTIEESMLKINQQKLKLEQ 999
Score = 64 (27.6 bits), Expect = 2.9e-65, Sum P(4) = 2.9e-65
Identities = 33/132 (25%), Positives = 55/132 (41%)
Query: 189 EKSLDSSQVDVSCSTKPENTSAGVPVEGSSSCPNDDDEKQLNASPTDSLADTKFHPAEEV 248
EK+ + V + + S G+P NDD + + S + L D K +E+
Sbjct: 112 EKTFNKDTVIIVSEPSEDEESQGLPTMARR---NDDISELEDLSELEDLKDAKLQTLKEL 168
Query: 249 LPHSQVTKSEQNDEVPVEKHEKSSTNGSSGIKFVLAIGASERDRKRK------P----EV 298
P +S+ ND + + + S+ +G+ ++ A RKRK P E
Sbjct: 169 FPQ----RSD-NDLLKLIE-STSTMDGAIAAALLMFGDAGGGPRKRKLSSSSEPYEEDEF 222
Query: 299 KDEDSQKKLRVD 310
D+ S KK R+D
Sbjct: 223 NDDQSIKKTRLD 234
Score = 57 (25.1 bits), Expect = 7.5e-65, Sum P(3) = 7.5e-65
Identities = 31/144 (21%), Positives = 61/144 (42%)
Query: 453 DTDLDAEVTENLAELSPNVIRSSDEECMKNDIGVDRIQVYRRSVTKECKVTKECKGENAI 512
D+D+ + ++ +P+ R + KN G+ I + S E V+ C N +
Sbjct: 56 DSDITEKTEDSSVPETPDNERKASISYFKNQRGIQYIDL---SSDSEDVVSPNCS--NTV 110
Query: 513 DLLREDDKDSDPVAVNGKVQDESAVSTEDLGERNDKMV-VEDADV--SLRDNEGLTVSEI 569
+ +KD+ + V+ +DE + + RND + +ED L+D + T+ E+
Sbjct: 111 QE-KTFNKDT-VIIVSEPSEDEESQGLPTMARRNDDISELEDLSELEDLKDAKLQTLKEL 168
Query: 570 HITCESTD--KDVDVGKKTSGSVA 591
D K ++ G++A
Sbjct: 169 FPQRSDNDLLKLIESTSTMDGAIA 192
Score = 50 (22.7 bits), Expect = 4.0e-64, Sum P(3) = 4.0e-64
Identities = 13/50 (26%), Positives = 23/50 (46%)
Query: 33 NGKEENLVTSESPRNTPSAKRRLKNEINADRSSTKKKGNDGYYYECVICD 82
NGKE + + P+N K + K + A KK+ + + + V+ D
Sbjct: 308 NGKEVSSRSQNYPKNATKTKLKQKFSMKAQNGFNKKRKKNVFNPKRVVED 357
Score = 43 (20.2 bits), Expect = 2.9e-65, Sum P(4) = 2.9e-65
Identities = 12/39 (30%), Positives = 20/39 (51%)
Query: 546 NDKMVVEDADVSLRDNEGLTVSEIHITCESTDKDVDVGK 584
N K VVED++ + G ++ E + + E +D GK
Sbjct: 350 NPKRVVEDSEYDSGSDVGSSLDEDYSSGEEVMEDGYKGK 388
Score = 43 (20.2 bits), Expect = 4.4e-63, Sum P(4) = 4.4e-63
Identities = 26/135 (19%), Positives = 52/135 (38%)
Query: 26 PCGPGLSNGKEENLVTSESPRNTPSAKRRLKNEINA--DRSSTKKKGNDGYYYE---CVI 80
P P + +EEN S NTP + K E ++ + ++K + Y+
Sbjct: 32 PSSPISLSAEEENAEGEVSRANTPDSDITEKTEDSSVPETPDNERKASISYFKNQRGIQY 91
Query: 81 CDLGGNL--LCCDSCPRTYHLQCLDPPLKRI---PNGKWQC---PKCTQKNDQLKPISNL 132
DL + + +C T + + I P+ + P ++ND + + +L
Sbjct: 92 IDLSSDSEDVVSPNCSNTVQEKTFNKDTVIIVSEPSEDEESQGLPTMARRNDDISELEDL 151
Query: 133 DSISKRARSKIITIK 147
+ +K+ T+K
Sbjct: 152 SELEDLKDAKLQTLK 166
Score = 40 (19.1 bits), Expect = 1.1e-23, Sum P(3) = 1.1e-23
Identities = 7/20 (35%), Positives = 12/20 (60%)
Query: 555 DVSLRDNEGLTVSEIHITCE 574
D+ D E +T E+H+ C+
Sbjct: 816 DLIFEDMEVMTDFELHVLCK 835
Score = 39 (18.8 bits), Expect = 2.3e-23, Sum P(4) = 2.3e-23
Identities = 8/19 (42%), Positives = 12/19 (63%)
Query: 1057 GSVEFLHEMRIKASAKLTL 1075
GS+ + H M I A+ +L L
Sbjct: 637 GSIRYQHLMTINANNRLLL 655
>MGI|MGI:95453 [details] [associations]
symbol:Smarcad1 "SWI/SNF-related, matrix-associated
actin-dependent regulator of chromatin, subfamily a, containing
DEAD/H box 1" species:10090 "Mus musculus" [GO:0000018 "regulation
of DNA recombination" evidence=ISS] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0000729 "DNA double-strand break
processing" evidence=ISO] [GO:0000792 "heterochromatin"
evidence=IDA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=ISO] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005694 "chromosome"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0006974
"response to DNA damage stimulus" evidence=IEA] [GO:0016568
"chromatin modification" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0035861 "site of double-strand break"
evidence=ISO] [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=ISO] [GO:0043596 "nuclear replication fork" evidence=ISO]
[GO:0051304 "chromosome separation" evidence=ISO] [GO:0070932
"histone H3 deacetylation" evidence=ISO] [GO:0070933 "histone H4
deacetylation" evidence=ISO] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR003892 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51140
PROSITE:PS51194 SMART:SM00490 MGI:MGI:95453 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0043596 GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0043044 GO:GO:0000792 GO:GO:0070932 GO:GO:0070933
GO:GO:0000729 GO:GO:0000018 HOGENOM:HOG000172362 GO:GO:0035861
KO:K14439 GeneTree:ENSGT00630000089890 GO:GO:0051304 OMA:KNQRGIQ
CTD:56916 HOVERGEN:HBG055804 EMBL:X69942 EMBL:AK122454
EMBL:BC042442 EMBL:AK134442 EMBL:AK147884 IPI:IPI00223926
IPI:IPI00556837 PIR:A56559 RefSeq:NP_001240321.1 RefSeq:NP_031984.1
UniGene:Mm.99113 ProteinModelPortal:Q04692 SMR:Q04692 STRING:Q04692
PhosphoSite:Q04692 PaxDb:Q04692 PRIDE:Q04692
Ensembl:ENSMUST00000031984 GeneID:13990 KEGG:mmu:13990
UCSC:uc009ced.1 UCSC:uc012emw.1 InParanoid:Q04692 OrthoDB:EOG4RV2QW
NextBio:284868 Bgee:Q04692 Genevestigator:Q04692
GermOnline:ENSMUSG00000029920 Uniprot:Q04692
Length = 1021
Score = 444 (161.4 bits), Expect = 3.3e-65, Sum P(5) = 3.3e-65
Identities = 112/317 (35%), Positives = 168/317 (52%)
Query: 746 EQPEELKGG-ALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKA 804
EQP L +L P+Q LNWL N ILADEMGLGKT+ A AF++ L+ E
Sbjct: 481 EQPSLLNQSLSLKPYQKVGLNWLALVHKHGLNGILADEMGLGKTIQAIAFLAYLFQEGN- 539
Query: 805 KLPCLVLVPLSTMPNWLAEFALWAPNLNVVEYHGCAKARAIIRQYEWHASDPDNLNKKTS 864
K P L++VP ST+ NWL E LW P+LNV+ Y+G + R IR N++ K
Sbjct: 540 KGPHLIVVPASTIDNWLREVNLWCPSLNVLCYYGSQEERKQIRF---------NIHNKYE 590
Query: 865 SYKFNVLLTTYEMILA---DSSHLRGVPWEVLVVDEGHRXXXXXXXXXXXXXXXXXQHRV 921
Y NV++TTY ++ D S R + + DEGH ++R+
Sbjct: 591 DY--NVIVTTYNCAISSSDDRSLFRRLKLNYAIFDEGHMLKNMGSIRYQHLMTINARNRL 648
Query: 922 LLTGTPLQNNIGEMYNLLNFLQPASFPSLSS-FEEKFNDLTTT---------QKVEELKK 971
LLTGTP+QNN+ E+ +LLNF+ P F S +S F+ T +++ K+
Sbjct: 649 LLTGTPVQNNLLELMSLLNFVMPHMFSSSTSEIRRMFSSKTKPADEQSIYEKERIAHAKQ 708
Query: 972 LVAPHMLRRLKKDAMQNIPPKTERMVPVELSSIQAEYYRAMLTKNYQILRNIGKGVAQQS 1031
++ P +LRR+K++ ++ +PPK +R+ +S Q + Y + + + + N+ K
Sbjct: 709 IIKPFILRRVKEEVLKLLPPKKDRIELCAMSEKQEQLYSGLFNRLKKSINNLEKNT---E 765
Query: 1032 MLNIVMQLRKVCNHPYL 1048
M N++MQLRK+ NHP L
Sbjct: 766 MCNVMMQLRKMANHPLL 782
Score = 309 (113.8 bits), Expect = 3.3e-65, Sum P(5) = 3.3e-65
Identities = 66/149 (44%), Positives = 98/149 (65%)
Query: 1070 SAKLTLLHSMLKVLYKEGHRVLIFSQMTKLLDILEDYLNIEFGPKTYERVDGSVSVGDRQ 1129
S K L +L L ++G RV++FSQ T +LDILE L + Y R+DG + +R
Sbjct: 848 SGKFRALGCILSELKQKGDRVVLFSQFTMMLDILEVLL--KHHQHRYLRLDGKTQISERI 905
Query: 1130 AAITRFNQDKSRFVFLLSTRSCGLGINLATADTVIIYDSDFNPHADIQAMNRAHRIGQSK 1189
I FN D FVFLLST++ GLGINL +A+ VI++D D NP+ D QA +R HR+GQ+K
Sbjct: 906 HLIDEFNTDMDIFVFLLSTKAGGLGINLTSANVVILHDIDCNPYNDKQAEDRCHRVGQTK 965
Query: 1190 RLLVYRLVVRASVEERILQLAKKKLMLDQ 1218
+LV +L+ + ++EE +L++ ++KL L+Q
Sbjct: 966 EVLVIKLISQGTIEESMLKINQQKLKLEQ 994
Score = 57 (25.1 bits), Expect = 3.3e-65, Sum P(5) = 3.3e-65
Identities = 32/175 (18%), Positives = 71/175 (40%)
Query: 423 ISATATDDRHSDDFLVSENHNKILEE-NLACDTDLDAEVTENLA-ELS---PNVIRSSDE 477
+S+++ +D +DD V + EE N + + + E E++ +L PN +
Sbjct: 209 LSSSSEEDDVNDDQSVKQPRGDRGEESNESAEASSNWEKQESIVLKLQKEFPNFDKQELR 268
Query: 478 ECMKNDI-----GVDRIQVYRRSVTKECKVTKECKGENAIDLLREDDKDSDPVAVNGKVQ 532
E +K ++ ++V+ +C E + + K++ + + K+
Sbjct: 269 EVLKEHEWMYTEALESLKVFAEDQDVQCASQSEVTNGKEVARNQNYSKNATKIKMKQKIS 328
Query: 533 DESAVSTEDLGERN---DKMVVEDADVSLRDNEGLTVSEIHITCESTDKDVDVGK 584
+ ++N K VED++ + G ++ E + +CE +D GK
Sbjct: 329 VKPQNGFNKKRKKNVFNPKKAVEDSEYDSGSDAGSSLDEDYSSCEEVMEDGYKGK 383
Score = 53 (23.7 bits), Expect = 2.6e-64, Sum P(4) = 2.6e-64
Identities = 31/143 (21%), Positives = 62/143 (43%)
Query: 457 DAEVTENLAELS----PNVIRSSDEECMKNDIGVDRIQVYRRSVTKECKVTKECKGENAI 512
D++VTE + S P+ R + C +N + + S T++ V+ C + +
Sbjct: 56 DSDVTEKTEDSSVPEPPDNERKASLSCFQNQRAIQEY-IDLSSDTED--VSPNCS--STV 110
Query: 513 DLLREDDKDSDPVAVNGKVQDESAVSTEDLGERNDKMVVEDADV--SLRDNEGLTVSEIH 570
++ KD+ + V+ +DE + + RND +ED L+D + T+ E+
Sbjct: 111 QE-KKFSKDT-VIIVSEPSEDEESHDLPSVTRRNDSSELEDLSELEDLKDAKLQTLKELF 168
Query: 571 ITCESTD--KDVDVGKKTSGSVA 591
+D K ++ G++A
Sbjct: 169 PQRSDSDLLKLIESTSTMDGAIA 191
Score = 48 (22.0 bits), Expect = 3.3e-65, Sum P(5) = 3.3e-65
Identities = 26/97 (26%), Positives = 42/97 (43%)
Query: 222 NDDDEKQLNASPTDSLADTKFHPAEEVLPHSQVTKSEQNDEVPVEKHEKSSTNGSSGIKF 281
ND E + + S + L D K +E+ P +++D ++ E +ST +
Sbjct: 142 NDSSELE-DLSELEDLKDAKLQTLKELFP-------QRSDSDLLKLIESTSTMDGAIAAA 193
Query: 282 VLAIG-ASERDRKRK-------PEVKDEDSQKKLRVD 310
+L G A RKRK +V D+ S K+ R D
Sbjct: 194 LLMFGDAGGGPRKRKLSSSSEEDDVNDDQSVKQPRGD 230
Score = 45 (20.9 bits), Expect = 1.8e-63, Sum P(4) = 1.8e-63
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 117 PKCTQKNDQ----LKPISNLDSISKRARSKI 143
PKC+QK Q L+P +N +++ + SKI
Sbjct: 400 PKCSQKKAQKITELRPFNNWEALFTKM-SKI 429
Score = 40 (19.1 bits), Expect = 3.9e-21, Sum P(4) = 3.9e-21
Identities = 7/20 (35%), Positives = 12/20 (60%)
Query: 555 DVSLRDNEGLTVSEIHITCE 574
D+ D E +T E+H+ C+
Sbjct: 811 DLIFEDMEVMTDFELHVLCK 830
Score = 38 (18.4 bits), Expect = 3.3e-65, Sum P(5) = 3.3e-65
Identities = 11/33 (33%), Positives = 14/33 (42%)
Query: 26 PCGPGLSNGKEENLVTSESPRNTPSAKRRLKNE 58
P P + +EEN S NTP + K E
Sbjct: 32 PSSPISLSAEEENAEGEGSRANTPDSDVTEKTE 64
Score = 38 (18.4 bits), Expect = 1.8e-63, Sum P(4) = 1.8e-63
Identities = 11/39 (28%), Positives = 19/39 (48%)
Query: 31 LSNGKEENLVTSESPRNTPSAKRRLKNEINADRSSTKKK 69
LS+ EE+ V + P R ++ +A+ SS +K
Sbjct: 209 LSSSSEEDDVNDDQSVKQPRGDRGEESNESAEASSNWEK 247
Score = 37 (18.1 bits), Expect = 2.2e-22, Sum P(5) = 2.2e-22
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 1057 GSVEFLHEMRIKASAKLTL 1075
GS+ + H M I A +L L
Sbjct: 632 GSIRYQHLMTINARNRLLL 650
>ASPGD|ASPL0000041040 [details] [associations]
symbol:AN9077 species:162425 "Emericella nidulans"
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0006338 "chromatin remodeling" evidence=IEA] [GO:0000812 "Swr1
complex" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR002464 Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0006355 GO:GO:0003677 EMBL:BN001306 GO:GO:0006351
GO:GO:0016568 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529
PROSITE:PS51204 GO:GO:0008026 EMBL:AACD01000169 KO:K11681
RefSeq:XP_682346.1 STRING:Q5ARK3 GeneID:2868023 KEGG:ani:AN9077.2
HOGENOM:HOG000186095 OMA:YGNQEER OrthoDB:EOG49S9FK Uniprot:Q5ARK3
Length = 1698
Score = 397 (144.8 bits), Expect = 3.7e-65, Sum P(5) = 3.7e-65
Identities = 116/336 (34%), Positives = 162/336 (48%)
Query: 745 TEQPEELKGGALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKA 804
T P L+G L +Q L+WL + N ILADEMGLGKT+ A ++ L E
Sbjct: 815 TPIPHLLRG-TLREYQHFGLDWLAGLYSNHINGILADEMGLGKTIQTIALLAHLAVEHGV 873
Query: 805 KLPCLVLVPLSTMPNWLAEFALWAPNLNVVEYHGCAKARAIIRQYEWHASDPDNLNKKTS 864
P LV+VP S + NW EF W P ++ Y+G + R R+ W D DN
Sbjct: 874 WGPHLVVVPTSVILNWEMEFKKWCPGFKIMTYYGNQEERRQKRR-GW--MD-DN------ 923
Query: 865 SYKFNVLLTTYEMILADSSHLRGVPWEVLVVDEGHRXXXXXXXXXXXXXXXXXQHRVLLT 924
+NVL+T+Y+++L D L+ W +++DE H + R+LLT
Sbjct: 924 --SWNVLITSYQLVLQDQQVLKRRSWHYMILDEAHNIKNFRSQRWQALLTFRTRARLLLT 981
Query: 925 GTPLQNNIGEMYNLLNFLQPAS--------FPSLSSFEEKFN--------------DLTT 962
GTPLQNN+ E+++LL FL P F L +F E F D
Sbjct: 982 GTPLQNNLTELWSLLFFLMPTDGDEAGIEGFADLRNFSEWFRRPVEQILEHGRETMDDEA 1041
Query: 963 TQKVEELKKLVAPHMLRRLKKDAMQNIPPKTERMVPVELSSIQAEYYRAMLTKNYQILRN 1022
Q V +L ++ P++LRRLK D + +P K E +V LS Q Y +++ Q
Sbjct: 1042 KQVVTKLHTVLRPYILRRLKADVEKQMPGKYEHVVYCRLSKRQRYLYDGFMSRA-QTKET 1100
Query: 1023 IGKGVAQQSMLNIVMQLRKVCNHPYLIPGTEPDSGS 1058
+ G S++N +MQLRKVCNHP L T P S S
Sbjct: 1101 LASG-NYLSIINCLMQLRKVCNHPDLFE-TRPISTS 1134
Score = 361 (132.1 bits), Expect = 3.7e-65, Sum P(5) = 3.7e-65
Identities = 108/314 (34%), Positives = 154/314 (49%)
Query: 1072 KLTLLHSMLKVLYKEGHRVLIFSQMTKLLDILEDYLNIEFGPKTYERVDGSVSVGDRQAA 1131
KL L +L+ L GHR LIF+QMTK+LD+LE +LNI G + Y R+DG+ V RQ
Sbjct: 1374 KLQRLDKLLRDLKAGGHRALIFTQMTKMLDVLEQFLNIH-GHR-YLRLDGTTKVEQRQIL 1431
Query: 1132 ITRFNQDKSRFVFLLSTRSCGLGINLATADTVIIYDSDFNPHADIQAMNRAHRIGQSKRL 1191
RFN D F+LS+RS GLGINL ADTVI YD D+NP D Q +R HRIGQ++ +
Sbjct: 1432 TDRFNNDNRILAFILSSRSGGLGINLTGADTVIFYDLDWNPAMDKQCQDRCHRIGQTRDV 1491
Query: 1192 LVYRLVVRASVEERILQLAKKKLMLDQLFVNKSG------SQKEVEDILRWGTEELFNDS 1245
+YR V ++E IL+ A +K MLD + + + ++ +V D++ G +E D
Sbjct: 1492 HIYRFVSEYTIESNILRKANQKRMLDDVVIQEGEFTTDYFTKLDVRDMI--GNDEALKDE 1549
Query: 1246 PGINGKDMGENN-TSIEEAVRDLEQKHRKRGGGLGDVYQDKCTEGSTKIVWDENAIA-RL 1303
+ EN T+ E K + +G + NA
Sbjct: 1550 ASAAMDRVLENRVTNTSRVFEQAEDKEDIDAAKNAQKELEHADDGDFDDRANANASGVTA 1609
Query: 1304 LDRSNLQSGSTDLAEGD-LENDMLGSVKATEWNEETTEDQAES-P-VAAVDDASAENSE- 1359
S +G T G L ++ S+ A N E ED A+S P V +DD E
Sbjct: 1610 ASASASGAGQTPTQAGTPLPDEAQQSLNAN--NAEVAEDTADSDPSVGHIDDYLLRFMEW 1667
Query: 1360 -RKEENAVTGIEEN 1372
K+E V ++++
Sbjct: 1668 NMKDEPLVLPVDKS 1681
Score = 61 (26.5 bits), Expect = 3.7e-65, Sum P(5) = 3.7e-65
Identities = 35/130 (26%), Positives = 54/130 (41%)
Query: 141 SKIITIKSQSGVKSSGADKVSQIFGNSILARKRSNKGKSVLALGVKSLEKSLDSSQVDVS 200
SKI+ K +S + S V Q + A+ + K ++ V S + SS + +S
Sbjct: 92 SKIVDGKRRS-TRVSNVGPVEQPPSD---AKPTRSSQKQYVSKAVSSQRNAAVSSPLPMS 147
Query: 201 CSTKPEN--TSAGVPVEGSSSCPNDDD---EKQLNASPTDSLADTK--------FHPAEE 247
S N + AGV V GS S ++ + SP A T+ +HP+
Sbjct: 148 PSRSGINRRSLAGVAVNGSPSTTAKGSIGRRRRESPSPVSKRASTRTRPDNMDAYHPSNG 207
Query: 248 VLPHSQVTKS 257
V P S TK+
Sbjct: 208 VTPRSNSTKT 217
Score = 59 (25.8 bits), Expect = 3.7e-65, Sum P(5) = 3.7e-65
Identities = 27/100 (27%), Positives = 43/100 (43%)
Query: 473 RSSDEECMKNDIGVDRIQVYRRSVTKECKVTKECKGENAIDLLREDDKDSDPVAVNGKVQ 532
R +E+ K+ +DR + + ++ E K E GE D D + NG
Sbjct: 425 RWEEEQKAKDQRALDRA-IKQSTMLFE-KRRLEILGETGSDAPETTTDDEEVETDNGSEN 482
Query: 533 DESAVSTEDLGERNDKMVVEDADVSLRDNE-GLTVSEIHI 571
D+ E+ GE N E+ D RD++ GLT E+ +
Sbjct: 483 DD-----EE-GESNMSTETEEEDGDDRDDDVGLTAEELRL 516
Score = 55 (24.4 bits), Expect = 1.6e-64, Sum P(4) = 1.6e-64
Identities = 20/70 (28%), Positives = 32/70 (45%)
Query: 169 LAR-KRSNKGKSVLAL--GVKSLEKSLDSSQVDV---SCSTKPENTSAGVPVEGSSSCPN 222
LAR + K K AL +K + ++++ + S PE T+ VE + N
Sbjct: 423 LARWEEEQKAKDQRALDRAIKQSTMLFEKRRLEILGETGSDAPETTTDDEEVETDNGSEN 482
Query: 223 DDDEKQLNAS 232
DD+E + N S
Sbjct: 483 DDEEGESNMS 492
Score = 53 (23.7 bits), Expect = 3.1e-64, Sum P(3) = 3.1e-64
Identities = 22/88 (25%), Positives = 35/88 (39%)
Query: 193 DSSQVDVSCSTKPENTSAGVPVEGSSSCPNDDDEKQLNASPTDSLADTKFHPAEEVLPHS 252
D+ VDV N S PV ++ E+Q + A ++ P S
Sbjct: 729 DTEPVDVDVLDTSTNDSVP-PVMSPATNLLKQIERQQHEPYHSRAASSEASPGTVATKPS 787
Query: 253 QVTKSEQNDEVPVEKHEKSSTNGSSGIK 280
+ +S + E P EKH + S + G+K
Sbjct: 788 E-PESVSSIEAPAEKHAQPSESPGPGLK 814
Score = 51 (23.0 bits), Expect = 3.8e-65, Sum P(4) = 3.8e-65
Identities = 19/68 (27%), Positives = 32/68 (47%)
Query: 517 EDDKDSDPVAVNGKVQDESA-VSTEDLGERNDKMVVEDADVSLRDNEGLTVSEIHITCES 575
ED +DSD +A + D S V+ + + ++ +++ D L D+ ES
Sbjct: 536 EDSEDSDDIAADNTPGDTSGGVNRSPPPDSSGQVELDEVDPVLIDDSD----------ES 585
Query: 576 TDKDVDVG 583
TD D D+G
Sbjct: 586 TDMDDDMG 593
Score = 49 (22.3 bits), Expect = 1.0e-27, Sum P(2) = 1.0e-27
Identities = 11/49 (22%), Positives = 23/49 (46%)
Query: 221 PNDDDEKQLNA-SPTDSLADTKFHPAEEVLPHSQVTKSEQNDEVPVEKH 268
P D DE + + + ++ P E++L H + T ++ +V + H
Sbjct: 1001 PTDGDEAGIEGFADLRNFSEWFRRPVEQILEHGRETMDDEAKQVVTKLH 1049
Score = 45 (20.9 bits), Expect = 1.6e-64, Sum P(4) = 1.6e-64
Identities = 35/141 (24%), Positives = 58/141 (41%)
Query: 426 TATDDRHSDDFLVSENHNKILEENLACDT------DLDAEV---TE-------NLAELSP 469
T TDD + SEN ++ E N++ +T D D +V E NL + +P
Sbjct: 467 TTTDDEEVETDNGSENDDEEGESNMSTETEEEDGDDRDDDVGLTAEELRLKYANLPDTNP 526
Query: 470 NVIRS--SDEECM-KNDIGVDRIQVYRRSVTKECKVTKECKGENAIDLLREDDKDSDPVA 526
+ +S SDE+ +DI D + G+ +D + DPV
Sbjct: 527 HPDQSPYSDEDSEDSDDIAADNTPGDTSGGVNRSP-PPDSSGQVELD-------EVDPVL 578
Query: 527 VNGKVQDESAVSTEDLGERND 547
++ DES +D+G+ +D
Sbjct: 579 IDDS--DESTDMDDDMGDSDD 597
Score = 41 (19.5 bits), Expect = 7.7e-28, Sum P(3) = 7.7e-28
Identities = 16/74 (21%), Positives = 31/74 (41%)
Query: 960 LTTTQKVEELKKLVAPHMLRRLKKDAMQNIPPKTERMVPVELSS-----IQAEYYRAMLT 1014
L QK ++ + + P L L + P+ + +P + S A Y++ +L
Sbjct: 300 LEEAQKRRQVTEAMEPGGL--LSSEVCSAFLPEPQEELPQQFSHQDHLVAHALYFKKLLD 357
Query: 1015 KNYQILRNIGKGVA 1028
K ++ R K +A
Sbjct: 358 KEHRAHRQAAKSLA 371
Score = 40 (19.1 bits), Expect = 3.7e-65, Sum P(5) = 3.7e-65
Identities = 8/28 (28%), Positives = 13/28 (46%)
Query: 727 DELPRGKGDCQQSEIVALTEQPEELKGG 754
D+ P D + S+ +A P + GG
Sbjct: 529 DQSPYSDEDSEDSDDIAADNTPGDTSGG 556
>UNIPROTKB|J9NX47 [details] [associations]
symbol:SMARCAD1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR003892 InterPro:IPR009060 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51140 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 SUPFAM:SSF46934 GeneTree:ENSGT00630000089890
EMBL:AAEX03016768 EMBL:AAEX03016769 Ensembl:ENSCAFT00000044961
Uniprot:J9NX47
Length = 1026
Score = 445 (161.7 bits), Expect = 8.4e-65, Sum P(3) = 8.4e-65
Identities = 113/317 (35%), Positives = 167/317 (52%)
Query: 746 EQPEELKGG-ALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKA 804
EQP L +L P+Q LNWL N ILADEMGLGKT+ A AF++ LY E
Sbjct: 486 EQPSILNQSLSLKPYQKVGLNWLALVHKHGLNGILADEMGLGKTIQAIAFLAYLYQEGN- 544
Query: 805 KLPCLVLVPLSTMPNWLAEFALWAPNLNVVEYHGCAKARAIIRQYEWHASDPDNLNKKTS 864
K P L++VP ST+ NWL E LW P L V+ Y+G + R IR Y N++ K
Sbjct: 545 KGPHLIVVPASTIDNWLREVNLWCPTLKVLCYYGSQEERKQIR-Y--------NIHSKYE 595
Query: 865 SYKFNVLLTTYEMILA---DSSHLRGVPWEVLVVDEGHRXXXXXXXXXXXXXXXXXQHRV 921
Y NV++TTY ++ D S R + + DEGH +R+
Sbjct: 596 EY--NVIVTTYNCAISSSDDRSLFRRLKLNYAIFDEGHMLKNMGSIRYQHLMTINANNRL 653
Query: 922 LLTGTPLQNNIGEMYNLLNFLQPASFPSLSS-FEEKFNDLTTT---------QKVEELKK 971
LLTGTP+QNN+ E+ +LLNF+ P F S +S F+ T + +++ K+
Sbjct: 654 LLTGTPVQNNLLELMSLLNFVMPHMFSSSTSEIRRMFSSKTKSADEQSIYEKERIAHAKQ 713
Query: 972 LVAPHMLRRLKKDAMQNIPPKTERMVPVELSSIQAEYYRAMLTKNYQILRNIGKGVAQQS 1031
++ P +LRR+K++ ++ +PPK +++ +S Q + Y + + + + NI K
Sbjct: 714 IIKPFILRRVKEEVLKQLPPKKDQIELCAMSEKQEQLYLGLFNRLKKSINNIEKST---E 770
Query: 1032 MLNIVMQLRKVCNHPYL 1048
M N++MQLRK+ NHP L
Sbjct: 771 MCNVMMQLRKMANHPLL 787
Score = 311 (114.5 bits), Expect = 8.4e-65, Sum P(3) = 8.4e-65
Identities = 66/149 (44%), Positives = 99/149 (66%)
Query: 1070 SAKLTLLHSMLKVLYKEGHRVLIFSQMTKLLDILEDYLNIEFGPKTYERVDGSVSVGDRQ 1129
S K +L +L L ++G RV++FSQ T +LDILE L + Y R+DG + +R
Sbjct: 853 SGKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVLL--KHHQHRYLRLDGKTQISERI 910
Query: 1130 AAITRFNQDKSRFVFLLSTRSCGLGINLATADTVIIYDSDFNPHADIQAMNRAHRIGQSK 1189
I FN D FVFLLST++ GLGINL +A+ VI++D D NP+ D QA +R HR+GQ+K
Sbjct: 911 HLIDEFNTDMDIFVFLLSTKAGGLGINLTSANVVILHDIDCNPYNDKQAEDRCHRVGQTK 970
Query: 1190 RLLVYRLVVRASVEERILQLAKKKLMLDQ 1218
+LV +L+ + ++EE +L++ ++KL L+Q
Sbjct: 971 EVLVIKLISQGTIEESMLKINQQKLKLEQ 999
Score = 47 (21.6 bits), Expect = 8.4e-65, Sum P(3) = 8.4e-65
Identities = 13/50 (26%), Positives = 22/50 (44%)
Query: 33 NGKEENLVTSESPRNTPSAKRRLKNEINADRSSTKKKGNDGYYYECVICD 82
NGKE + + P+N K + K + KK+ + + + VI D
Sbjct: 308 NGKEASSRSQNYPKNAAKTKLKQKCSMKPQNGFNKKRKKNVFNPKRVIED 357
Score = 46 (21.3 bits), Expect = 2.7e-64, Sum P(4) = 2.7e-64
Identities = 35/135 (25%), Positives = 55/135 (40%)
Query: 189 EKSLDSSQVDVSCSTKPENTSAGVPVEGSSSCPNDDDEKQLNASPT-DSLADTKF-HPAE 246
EK + V + + S G+P + S N+DD +L T D + +K H +
Sbjct: 108 EKKFNKDTVIIVSEPSEDEESQGLP---TMSGRNNDDISELEDLFTVDDIKGSKIRHLSR 164
Query: 247 EVLPHSQVTKSEQNDEVPVEKHEKSSTNGSSGIKFVL---AIGASERDRK----RKP--- 296
E L T +N +E S+ +G+ ++ A G R RK +P
Sbjct: 165 EFLRRQCRTLHLKN---LIES--TSTMDGAIAAALLMFGDAEGGGPRKRKLSSSSEPYEE 219
Query: 297 -EVKDEDSQKKLRVD 310
E D+ S KK R+D
Sbjct: 220 DEFNDDQSIKKKRLD 234
Score = 42 (19.8 bits), Expect = 2.7e-64, Sum P(4) = 2.7e-64
Identities = 11/39 (28%), Positives = 20/39 (51%)
Query: 546 NDKMVVEDADVSLRDNEGLTVSEIHITCESTDKDVDVGK 584
N K V+ED++ + G ++ E + + E +D GK
Sbjct: 350 NPKRVIEDSEYDSGSDVGSSLDEDYSSGEEVMEDGYKGK 388
Score = 40 (19.1 bits), Expect = 6.5e-22, Sum P(3) = 6.5e-22
Identities = 7/20 (35%), Positives = 12/20 (60%)
Query: 555 DVSLRDNEGLTVSEIHITCE 574
D+ D E +T E+H+ C+
Sbjct: 816 DLIFEDMEVMTDFELHVLCK 835
Score = 39 (18.8 bits), Expect = 2.0e-21, Sum P(4) = 2.0e-21
Identities = 8/19 (42%), Positives = 12/19 (63%)
Query: 1057 GSVEFLHEMRIKASAKLTL 1075
GS+ + H M I A+ +L L
Sbjct: 637 GSIRYQHLMTINANNRLLL 655
Score = 37 (18.1 bits), Expect = 8.8e-64, Sum P(4) = 8.8e-64
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 708 LTDLFVQFERQTLKKDASEDELPRGKGDCQQSE 740
L L V E Q ++ AS+ E P GK +S+
Sbjct: 286 LESLKVFAEDQDMQY-ASQSEFPNGKEASSRSQ 317
Score = 37 (18.1 bits), Expect = 9.3e-64, Sum P(3) = 9.3e-64
Identities = 15/64 (23%), Positives = 27/64 (42%)
Query: 190 KSLDSSQVDVSCSTKPENTSAGVPVEGSSSCPND----DDEKQLNASPTDSLADTKFHPA 245
K+ +++ CS KP+N G + + N +D + + S S D +
Sbjct: 321 KNAAKTKLKQKCSMKPQN---GFNKKRKKNVFNPKRVIEDSEYDSGSDVGSSLDEDYSSG 377
Query: 246 EEVL 249
EEV+
Sbjct: 378 EEVM 381
>UNIPROTKB|E2RG62 [details] [associations]
symbol:SMARCAD1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0070933 "histone H4 deacetylation"
evidence=IEA] [GO:0070932 "histone H3 deacetylation" evidence=IEA]
[GO:0051304 "chromosome separation" evidence=IEA] [GO:0043596
"nuclear replication fork" evidence=IEA] [GO:0043044 "ATP-dependent
chromatin remodeling" evidence=IEA] [GO:0035861 "site of
double-strand break" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0000792 "heterochromatin" evidence=IEA]
[GO:0000729 "DNA double-strand break processing" evidence=IEA]
[GO:0000018 "regulation of DNA recombination" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR003892 InterPro:IPR009060 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51140 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003677 GO:GO:0043596 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 SUPFAM:SSF46934 GO:GO:0000792
GO:GO:0070932 GO:GO:0070933 GO:GO:0000018
GeneTree:ENSGT00630000089890 GO:GO:0051304 EMBL:AAEX03016768
EMBL:AAEX03016769 Ensembl:ENSCAFT00000015951 Uniprot:E2RG62
Length = 1026
Score = 445 (161.7 bits), Expect = 8.4e-65, Sum P(3) = 8.4e-65
Identities = 113/317 (35%), Positives = 167/317 (52%)
Query: 746 EQPEELKGG-ALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKA 804
EQP L +L P+Q LNWL N ILADEMGLGKT+ A AF++ LY E
Sbjct: 486 EQPSILNQSLSLKPYQKVGLNWLALVHKHGLNGILADEMGLGKTIQAIAFLAYLYQEGN- 544
Query: 805 KLPCLVLVPLSTMPNWLAEFALWAPNLNVVEYHGCAKARAIIRQYEWHASDPDNLNKKTS 864
K P L++VP ST+ NWL E LW P L V+ Y+G + R IR Y N++ K
Sbjct: 545 KGPHLIVVPASTIDNWLREVNLWCPTLKVLCYYGSQEERKQIR-Y--------NIHSKYE 595
Query: 865 SYKFNVLLTTYEMILA---DSSHLRGVPWEVLVVDEGHRXXXXXXXXXXXXXXXXXQHRV 921
Y NV++TTY ++ D S R + + DEGH +R+
Sbjct: 596 EY--NVIVTTYNCAISSSDDRSLFRRLKLNYAIFDEGHMLKNMGSIRYQHLMTINANNRL 653
Query: 922 LLTGTPLQNNIGEMYNLLNFLQPASFPSLSS-FEEKFNDLTTT---------QKVEELKK 971
LLTGTP+QNN+ E+ +LLNF+ P F S +S F+ T + +++ K+
Sbjct: 654 LLTGTPVQNNLLELMSLLNFVMPHMFSSSTSEIRRMFSSKTKSADEQSIYEKERIAHAKQ 713
Query: 972 LVAPHMLRRLKKDAMQNIPPKTERMVPVELSSIQAEYYRAMLTKNYQILRNIGKGVAQQS 1031
++ P +LRR+K++ ++ +PPK +++ +S Q + Y + + + + NI K
Sbjct: 714 IIKPFILRRVKEEVLKQLPPKKDQIELCAMSEKQEQLYLGLFNRLKKSINNIEKST---E 770
Query: 1032 MLNIVMQLRKVCNHPYL 1048
M N++MQLRK+ NHP L
Sbjct: 771 MCNVMMQLRKMANHPLL 787
Score = 311 (114.5 bits), Expect = 8.4e-65, Sum P(3) = 8.4e-65
Identities = 66/149 (44%), Positives = 99/149 (66%)
Query: 1070 SAKLTLLHSMLKVLYKEGHRVLIFSQMTKLLDILEDYLNIEFGPKTYERVDGSVSVGDRQ 1129
S K +L +L L ++G RV++FSQ T +LDILE L + Y R+DG + +R
Sbjct: 853 SGKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVLL--KHHQHRYLRLDGKTQISERI 910
Query: 1130 AAITRFNQDKSRFVFLLSTRSCGLGINLATADTVIIYDSDFNPHADIQAMNRAHRIGQSK 1189
I FN D FVFLLST++ GLGINL +A+ VI++D D NP+ D QA +R HR+GQ+K
Sbjct: 911 HLIDEFNTDMDIFVFLLSTKAGGLGINLTSANVVILHDIDCNPYNDKQAEDRCHRVGQTK 970
Query: 1190 RLLVYRLVVRASVEERILQLAKKKLMLDQ 1218
+LV +L+ + ++EE +L++ ++KL L+Q
Sbjct: 971 EVLVIKLISQGTIEESMLKINQQKLKLEQ 999
Score = 47 (21.6 bits), Expect = 8.4e-65, Sum P(3) = 8.4e-65
Identities = 13/50 (26%), Positives = 22/50 (44%)
Query: 33 NGKEENLVTSESPRNTPSAKRRLKNEINADRSSTKKKGNDGYYYECVICD 82
NGKE + + P+N K + K + KK+ + + + VI D
Sbjct: 308 NGKEASSRSQNYPKNAAKTKLKQKCSMKPQNGFNKKRKKNVFNPKRVIED 357
Score = 42 (19.8 bits), Expect = 2.8e-64, Sum P(3) = 2.8e-64
Identities = 11/39 (28%), Positives = 20/39 (51%)
Query: 546 NDKMVVEDADVSLRDNEGLTVSEIHITCESTDKDVDVGK 584
N K V+ED++ + G ++ E + + E +D GK
Sbjct: 350 NPKRVIEDSEYDSGSDVGSSLDEDYSSGEEVMEDGYKGK 388
Score = 40 (19.1 bits), Expect = 6.5e-22, Sum P(3) = 6.5e-22
Identities = 7/20 (35%), Positives = 12/20 (60%)
Query: 555 DVSLRDNEGLTVSEIHITCE 574
D+ D E +T E+H+ C+
Sbjct: 816 DLIFEDMEVMTDFELHVLCK 835
Score = 39 (18.8 bits), Expect = 8.2e-22, Sum P(3) = 8.2e-22
Identities = 8/19 (42%), Positives = 12/19 (63%)
Query: 1057 GSVEFLHEMRIKASAKLTL 1075
GS+ + H M I A+ +L L
Sbjct: 637 GSIRYQHLMTINANNRLLL 655
Score = 37 (18.1 bits), Expect = 9.3e-64, Sum P(3) = 9.3e-64
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 708 LTDLFVQFERQTLKKDASEDELPRGKGDCQQSE 740
L L V E Q ++ AS+ E P GK +S+
Sbjct: 286 LESLKVFAEDQDMQY-ASQSEFPNGKEASSRSQ 317
Score = 37 (18.1 bits), Expect = 9.3e-64, Sum P(3) = 9.3e-64
Identities = 15/64 (23%), Positives = 27/64 (42%)
Query: 190 KSLDSSQVDVSCSTKPENTSAGVPVEGSSSCPND----DDEKQLNASPTDSLADTKFHPA 245
K+ +++ CS KP+N G + + N +D + + S S D +
Sbjct: 321 KNAAKTKLKQKCSMKPQN---GFNKKRKKNVFNPKRVIEDSEYDSGSDVGSSLDEDYSSG 377
Query: 246 EEVL 249
EEV+
Sbjct: 378 EEVM 381
>FB|FBgn0032157 [details] [associations]
symbol:Etl1 "Etl1 homologue" species:7227 "Drosophila
melanogaster" [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=ISS] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 EMBL:AE014134 GO:GO:0003677
GO:GO:0006281 GO:GO:0016568 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 KO:K14439
GeneTree:ENSGT00630000089890 OMA:KEERYMA EMBL:AY060597
RefSeq:NP_001033889.1 RefSeq:NP_001033890.1 RefSeq:NP_609320.2
UniGene:Dm.3953 ProteinModelPortal:Q9VL72 SMR:Q9VL72 IntAct:Q9VL72
STRING:Q9VL72 PRIDE:Q9VL72 EnsemblMetazoa:FBtr0079901 GeneID:34311
KEGG:dme:Dmel_CG5899 UCSC:CG5899-RA FlyBase:FBgn0032157
InParanoid:Q9VL72 PhylomeDB:Q9VL72 GenomeRNAi:34311 NextBio:787873
Bgee:Q9VL72 Uniprot:Q9VL72
Length = 844
Score = 382 (139.5 bits), Expect = 8.7e-65, Sum P(3) = 8.7e-65
Identities = 110/350 (31%), Positives = 176/350 (50%)
Query: 744 LTEQPEELKGGA-LFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEF 802
+ EQP+ L G L +Q+ LNWL + N ILADEMGLGKT+ AF++ L
Sbjct: 276 IVEQPKLLSSGLQLADYQIIGLNWLTVMHKQEMNGILADEMGLGKTIQVIAFLAYLKENG 335
Query: 803 KAKLPCLVLVPLSTMPNWLAEFALWAPNLNVVEYHGCAKARAIIRQYEWHASDPDNLNKK 862
++ L++VP ST+ NW AE + W P L V +YHG R +R A D
Sbjct: 336 LSQAAHLIVVPSSTLDNWEAEISRWCPELVVEKYHGSQDERRRMRGR--FAKD------- 386
Query: 863 TSSYKFNVLLTTYEMILA---DSSHLRGVPWEVLVVDEGHRXXXXXXXXXXXXXXXXXQH 919
F+VLLTTY ++ + + R + ++ DE H +
Sbjct: 387 -GFTGFDVLLTTYHIVGSTPEERKMFRVCKLDYVIFDEAHMLKNMTTQRYANLITINARM 445
Query: 920 RVLLTGTPLQNNIGEMYNLLNFLQPASFP-SLSSFEEKF----------NDLTTTQK--V 966
R+LLTGTPLQNN+ E+ +LL F+ P F S+ + F ++++ Q+ +
Sbjct: 446 RILLTGTPLQNNLLELISLLCFVMPKFFAKSIEDIKSLFAKKGKSDGDQDEVSQFQETQI 505
Query: 967 EELKKLVAPHMLRRLKKDAMQNIPPKTERMVPVELSSIQAEYYRAMLTKNYQILRNIGK- 1025
+ K+++ P +LRRLKKD ++N+P K + V +SS Q YY ++ +Y N G+
Sbjct: 506 QRAKRIMKPFVLRRLKKDVLKNLPKKLSLVEKVPMSSQQKIYYHELV--DYYS-NNKGEV 562
Query: 1026 -GVAQQSMLNIVMQLRKVCNHPYLIPGTEPDSGSVEFLHEMRIKASAKLT 1074
++++ + I+M++R++ NHP L+ D+ F + +S K T
Sbjct: 563 CSSSERAGIAIMMEMRRIANHPLLMRHYFTDANLRGFSKRLANASSFKKT 612
Score = 372 (136.0 bits), Expect = 8.7e-65, Sum P(3) = 8.7e-65
Identities = 87/198 (43%), Positives = 127/198 (64%)
Query: 1070 SAKLTLLHSMLKVLYKEGHRVLIFSQMTKLLDILEDYLNI-EFGPKTYERVDGSVSVGDR 1128
S K L ++L L EGHRVL+FSQ T +LDI+E+YL I +FG + R+DG+ +V R
Sbjct: 651 SGKFLYLDTLLPKLKAEGHRVLLFSQFTMMLDIVEEYLRIRKFG---FCRLDGATAVNVR 707
Query: 1129 QAAITRFNQDKSRFVFLLSTRSCGLGINLATADTVIIYDSDFNPHADIQAMNRAHRIGQS 1188
Q IT FN D S FVFLLST++ G+GINL ADT +I+D DFNP+ D QA +R HR+GQ
Sbjct: 708 QDLITDFNGDDSIFVFLLSTKAGGVGINLTAADTCVIHDIDFNPYNDKQAEDRCHRMGQQ 767
Query: 1189 KRLLVYRLVVRASVEERILQLAKKKLMLDQ-LFVNKSGSQKEVEDILRWGTEELFNDSPG 1247
+ + +YRL+ +++EE IL A++KL L++ + N+ G E +++ T L G
Sbjct: 768 RPVTIYRLISESTIEEGILMAAEEKLKLEKDITSNEKGEVHEQRCVVKLLTTAL-----G 822
Query: 1248 INGKDMGEN-NTSIEEAV 1264
++ KD E N S+ ++
Sbjct: 823 LD-KDQEEQLNNSLNNSI 839
Score = 47 (21.6 bits), Expect = 8.7e-65, Sum P(3) = 8.7e-65
Identities = 16/82 (19%), Positives = 33/82 (40%)
Query: 460 VTENLAELSPNVIRSSDEECMKNDIGVDRIQVYRRSVTKECKVTKECKGENAIDLLREDD 519
++++ S + SS + +D+ RI SV T+ G+ I ++ + D
Sbjct: 1 MSDSTVAASASASASSSAKSSLSDLRQFRINKNASSVVASPSRTERVPGKKRIQVMADSD 60
Query: 520 KDSDPVAVNGKVQDESAVSTED 541
D + K + E V ++
Sbjct: 61 SDGNDSQTPKKTKLELTVKEKE 82
Score = 42 (19.8 bits), Expect = 2.9e-64, Sum P(3) = 2.9e-64
Identities = 8/34 (23%), Positives = 23/34 (67%)
Query: 428 TDDRHSDDFLVSENHNKILEENLACDTDLDAEVT 461
+D+ HSDD V ++ +++ + + + D+++ ++T
Sbjct: 149 SDNDHSDDDDVKQSKDQVYDSDDS-DSEMSTKMT 181
>UNIPROTKB|F1NAD2 [details] [associations]
symbol:SMARCAD1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000018 "regulation of
DNA recombination" evidence=IEA] [GO:0000729 "DNA double-strand
break processing" evidence=IEA] [GO:0000792 "heterochromatin"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0035861
"site of double-strand break" evidence=IEA] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=IEA] [GO:0043596
"nuclear replication fork" evidence=IEA] [GO:0051304 "chromosome
separation" evidence=IEA] [GO:0070932 "histone H3 deacetylation"
evidence=IEA] [GO:0070933 "histone H4 deacetylation" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR003892
InterPro:IPR009060 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51140
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003677
GO:GO:0043596 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 SUPFAM:SSF46934 GO:GO:0000792 GO:GO:0070932
GO:GO:0070933 GO:GO:0000018 GeneTree:ENSGT00630000089890
GO:GO:0051304 OMA:KNQRGIQ EMBL:AADN02016061 EMBL:AADN02016062
EMBL:AADN02016063 EMBL:AADN02016064 EMBL:AADN02016065
EMBL:AADN02016066 EMBL:AADN02016067 IPI:IPI00583150
Ensembl:ENSGALT00000016936 Uniprot:F1NAD2
Length = 963
Score = 437 (158.9 bits), Expect = 1.2e-64, Sum P(2) = 1.2e-64
Identities = 137/415 (33%), Positives = 204/415 (49%)
Query: 652 TVINICDERWKQPQRVISLR--SSKDGTREAFVKWTGLPYDECTWEKLDEPALEKYSHLT 709
T+I C E K+ Q++I+LR +S + K GL D W + L++ +
Sbjct: 337 TMIPQCSE--KKVQKIIALRPFNSWEALLSKITKTAGLSED-IVWNC--KTLLKERDVVL 391
Query: 710 DLFVQFERQTLKKDASEDELPRGKGDCQQSEIVALTEQPEELKGGA-LFPHQLEALNWLR 768
L + E + K ++ G C+ + EQP L L P+Q LNWL
Sbjct: 392 KLMNKCEEISNKLTKQVTKITED-GGCRWN-----IEQPSVLNQSLELKPYQKIGLNWLA 445
Query: 769 KCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLSTMPNWLAEFALWA 828
N ILADEMGLGKT+ A AF++ +Y E + P L++VP ST+ NW+ E LW
Sbjct: 446 LLHKHGLNGILADEMGLGKTIQAIAFLAHIYQEGD-RGPHLIVVPASTLDNWIREVNLWC 504
Query: 829 PNLNVVEYH-GCAKARAIIRQYEWHASDPDNLNKKTSSYKFNVLLTTYEMILA---DSSH 884
P LNV+ Y+ G + R +R D N+ FNV++TTY ++ D S
Sbjct: 505 PELNVLFYYVGSQEDRKHLRA--------DISNRVVD---FNVIVTTYNCAISSSDDRSL 553
Query: 885 LRGVPWEVLVVDEGHRXXXXXXXXXXXXXXXXXQHRVLLTGTPLQNNIGEMYNLLNFLQP 944
R V + DEGH +HR+LLTGTP+QNN+ E+ +LLNF+ P
Sbjct: 554 FRKVKLNYAIFDEGHMLKNMSSVRYQQLMRINAKHRLLLTGTPVQNNLLELMSLLNFVMP 613
Query: 945 ASFPSLSS-----FEEKFN---DLTTTQK--VEELKKLVAPHMLRRLKKDAMQNIPPKTE 994
F S +S F K + +T +K + K+++ P +LRR+K + ++ +PPK +
Sbjct: 614 HMFSSSTSEIRRMFSSKAKTAEEQSTYEKERIAHAKQIIKPFILRRVKDEVLKQLPPKKD 673
Query: 995 RMVPVELSSIQAEYYRAMLTKNYQILRNIGKGVAQQS-MLNIVMQLRKVCNHPYL 1048
+ +S Q + Y +L K L+ KG + S M N +MQLRK+ NHP L
Sbjct: 674 HIELCAMSEKQEQLYCDLLNK----LKKTMKGNEKNSDMGNAMMQLRKMANHPLL 724
Score = 314 (115.6 bits), Expect = 1.2e-64, Sum P(2) = 1.2e-64
Identities = 68/160 (42%), Positives = 105/160 (65%)
Query: 1060 EFLHEM-RIKASAKLTLLHSMLKVLYKEGHRVLIFSQMTKLLDILEDYLNIEFGPKTYER 1118
+F +M +I S K +L +L L ++G RV++FSQ T +LDILE +L + Y R
Sbjct: 779 DFKLDMDQILDSGKFRVLERLLSDLKEKGDRVVLFSQFTMVLDILEVFL--KHWQHRYIR 836
Query: 1119 VDGSVSVGDRQAAITRFNQDKSRFVFLLSTRSCGLGINLATADTVIIYDSDFNPHADIQA 1178
+DG + DR I FN D FVFLLST++ GLGINL +A+ VI++D D NP+ D QA
Sbjct: 837 LDGKTQISDRIHLIDEFNTDMDIFVFLLSTKAGGLGINLTSANVVILHDIDCNPYNDKQA 896
Query: 1179 MNRAHRIGQSKRLLVYRLVVRASVEERILQLAKKKLMLDQ 1218
+R HR+GQ++ + V +L+ + ++EE +L++ ++KL L+Q
Sbjct: 897 EDRCHRVGQTREVKVIKLISKGTIEESMLKMNQQKLKLEQ 936
>UNIPROTKB|E1B7X9 [details] [associations]
symbol:SMARCAD1 "SWI/SNF-related matrix-associated
actin-dependent regulator of chromatin subfamily A containing
DEAD/H box 1" species:9913 "Bos taurus" [GO:0035861 "site of
double-strand break" evidence=ISS] [GO:0043044 "ATP-dependent
chromatin remodeling" evidence=ISS] [GO:0000729 "DNA double-strand
break processing" evidence=ISS] [GO:0070933 "histone H4
deacetylation" evidence=ISS] [GO:0070932 "histone H3 deacetylation"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0000792
"heterochromatin" evidence=ISS] [GO:0051304 "chromosome separation"
evidence=ISS] [GO:0043596 "nuclear replication fork" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0000018 "regulation of
DNA recombination" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR003892
InterPro:IPR009060 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51140
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0043596 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0043044 SUPFAM:SSF46934
GO:GO:0000792 GO:GO:0070932 GO:GO:0070933 GO:GO:0000729
GO:GO:0000018 GO:GO:0035861 GeneTree:ENSGT00630000089890
GO:GO:0051304 EMBL:DAAA02016925 EMBL:DAAA02016926 IPI:IPI00826348
UniGene:Bt.77636 Ensembl:ENSBTAT00000047936 OMA:KNQRGIQ
Uniprot:E1B7X9
Length = 1028
Score = 445 (161.7 bits), Expect = 1.4e-64, Sum P(3) = 1.4e-64
Identities = 113/318 (35%), Positives = 167/318 (52%)
Query: 745 TEQPEELKGG-ALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFK 803
TEQP L +L P+Q LNWL N ILADEMGLGKT+ A AF++ LY E
Sbjct: 487 TEQPSILNQSLSLKPYQKVGLNWLALVHKHGLNGILADEMGLGKTIQAIAFLAYLYQEGN 546
Query: 804 AKLPCLVLVPLSTMPNWLAEFALWAPNLNVVEYHGCAKARAIIRQYEWHASDPDNLNKKT 863
K P L++VP ST+ NWL E LW P L V+ Y+G + R IR Y N++ +
Sbjct: 547 -KGPHLIVVPASTIDNWLREVNLWCPTLKVLCYYGSQEERKQIR-Y--------NIHSRY 596
Query: 864 SSYKFNVLLTTYEMILA---DSSHLRGVPWEVLVVDEGHRXXXXXXXXXXXXXXXXXQHR 920
Y NV++TTY ++ D S R + + DEGH +R
Sbjct: 597 EEY--NVIVTTYNCAISSSDDRSLFRRLKLNYAIFDEGHMLKNMGSIRYQHLMTINANNR 654
Query: 921 VLLTGTPLQNNIGEMYNLLNFLQPASFPSLSS-FEEKFNDLTTT---------QKVEELK 970
+LLTGTP+QNN+ E+ +LLNF+ P F S +S F+ T +++ K
Sbjct: 655 LLLTGTPVQNNLLELMSLLNFVMPHMFSSSTSEIRRMFSSKTKPADEQSIYEKERIAHAK 714
Query: 971 KLVAPHMLRRLKKDAMQNIPPKTERMVPVELSSIQAEYYRAMLTKNYQILRNIGKGVAQQ 1030
+++ P +LRR+K++ ++ +PPK +R+ +S Q + Y + + + + N+ K
Sbjct: 715 QIIKPFILRRVKEEVLKQLPPKKDRIELCAMSEKQEQLYMNLFNRLKKSINNMEKNT--- 771
Query: 1031 SMLNIVMQLRKVCNHPYL 1048
M N++MQLRK+ NHP L
Sbjct: 772 EMCNVMMQLRKMANHPLL 789
Score = 310 (114.2 bits), Expect = 1.4e-64, Sum P(3) = 1.4e-64
Identities = 66/149 (44%), Positives = 99/149 (66%)
Query: 1070 SAKLTLLHSMLKVLYKEGHRVLIFSQMTKLLDILEDYLNIEFGPKTYERVDGSVSVGDRQ 1129
S K +L +L L ++G RV++FSQ T +LDILE L + Y R+DG + +R
Sbjct: 855 SGKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVLL--KHHQHRYLRLDGKTQISERI 912
Query: 1130 AAITRFNQDKSRFVFLLSTRSCGLGINLATADTVIIYDSDFNPHADIQAMNRAHRIGQSK 1189
I FN D FVFLLST++ GLGINL +A+ VI++D D NP+ D QA +R HR+GQ+K
Sbjct: 913 HLIDEFNTDMDIFVFLLSTKAGGLGINLTSANVVILHDIDCNPYNDKQAEDRCHRVGQTK 972
Query: 1190 RLLVYRLVVRASVEERILQLAKKKLMLDQ 1218
+LV +L+ + ++EE +L++ ++KL L+Q
Sbjct: 973 EVLVIKLIGQGTIEESMLKINQQKLKLEQ 1001
Score = 46 (21.3 bits), Expect = 1.4e-64, Sum P(3) = 1.4e-64
Identities = 13/50 (26%), Positives = 22/50 (44%)
Query: 33 NGKEENLVTSESPRNTPSAKRRLKNEINADRSSTKKKGNDGYYYECVICD 82
NGKE + + P+N K + K + KK+ + + + VI D
Sbjct: 310 NGKEVSSRSQNYPKNAAKTKLKQKCSMKPQNGFNKKRKKNVFNPKRVIED 359
Score = 42 (19.8 bits), Expect = 1.1e-63, Sum P(4) = 1.1e-63
Identities = 11/39 (28%), Positives = 20/39 (51%)
Query: 546 NDKMVVEDADVSLRDNEGLTVSEIHITCESTDKDVDVGK 584
N K V+ED++ + G ++ E + + E +D GK
Sbjct: 352 NPKRVIEDSEYDSGSDVGSSLDEDYSSGEEVMEDGYKGK 390
Score = 41 (19.5 bits), Expect = 1.1e-63, Sum P(4) = 1.1e-63
Identities = 25/106 (23%), Positives = 38/106 (35%)
Query: 205 PENTSAGVPVEGSSSCPNDDDEKQLNASPTDSLADTKFHPAEEVLPHSQVTKSEQNDEVP 264
PE T P + S P ++ NA S A T E S V ++ +ND
Sbjct: 21 PEATPQ--PSQPGPSSPISLSAEEENAEGEVSRAGTPDSDVTEKTEDSSVPETPENDR-- 76
Query: 265 VEKHEKSSTNGSSGIKFVLAIGASERDRKRKPEVKDEDSQKKLRVD 310
K S GI+++ +S+ + P +KK D
Sbjct: 77 --KASISYFKNQRGIQYIDL--SSDSEDVVSPNCSSTVQEKKFNKD 118
Score = 40 (19.1 bits), Expect = 5.8e-64, Sum P(3) = 5.8e-64
Identities = 18/77 (23%), Positives = 33/77 (42%)
Query: 177 GKSVLALGVKSLEKSLDSSQVDVSCSTKPENTSAGVPVEGSSSCPND----DDEKQLNAS 232
GK V + ++ K+ +++ CS KP+N G + + N +D + + S
Sbjct: 311 GKEVSSRS-QNYPKNAAKTKLKQKCSMKPQN---GFNKKRKKNVFNPKRVIEDSEYDSGS 366
Query: 233 PTDSLADTKFHPAEEVL 249
S D + EEV+
Sbjct: 367 DVGSSLDEDYSSGEEVM 383
Score = 40 (19.1 bits), Expect = 1.1e-21, Sum P(3) = 1.1e-21
Identities = 7/20 (35%), Positives = 12/20 (60%)
Query: 555 DVSLRDNEGLTVSEIHITCE 574
D+ D E +T E+H+ C+
Sbjct: 818 DLIFEDMEVMTDFELHVLCK 837
Score = 39 (18.8 bits), Expect = 8.1e-21, Sum P(4) = 8.1e-21
Identities = 8/19 (42%), Positives = 12/19 (63%)
Query: 1057 GSVEFLHEMRIKASAKLTL 1075
GS+ + H M I A+ +L L
Sbjct: 639 GSIRYQHLMTINANNRLLL 657
Score = 37 (18.1 bits), Expect = 3.0e-63, Sum P(4) = 3.0e-63
Identities = 8/24 (33%), Positives = 13/24 (54%)
Query: 287 ASERDRKRKPEVKDEDSQKKLRVD 310
+S + + E D+ S KK R+D
Sbjct: 213 SSSSEPFEEDEFNDDQSMKKKRLD 236
>UNIPROTKB|F1RWW3 [details] [associations]
symbol:SMARCAD1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0070933 "histone H4 deacetylation" evidence=IEA]
[GO:0070932 "histone H3 deacetylation" evidence=IEA] [GO:0051304
"chromosome separation" evidence=IEA] [GO:0043596 "nuclear
replication fork" evidence=IEA] [GO:0043044 "ATP-dependent
chromatin remodeling" evidence=IEA] [GO:0035861 "site of
double-strand break" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0000792 "heterochromatin" evidence=IEA]
[GO:0000729 "DNA double-strand break processing" evidence=IEA]
[GO:0000018 "regulation of DNA recombination" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR003892 InterPro:IPR009060 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51140 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003677 GO:GO:0043596 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 SUPFAM:SSF46934 GO:GO:0000792
GO:GO:0070932 GO:GO:0070933 GO:GO:0000018
GeneTree:ENSGT00630000089890 GO:GO:0051304 OMA:KNQRGIQ
EMBL:CU951443 Ensembl:ENSSSCT00000010066 Uniprot:F1RWW3
Length = 1029
Score = 442 (160.7 bits), Expect = 1.8e-64, Sum P(4) = 1.8e-64
Identities = 112/317 (35%), Positives = 167/317 (52%)
Query: 746 EQPEELKGG-ALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKA 804
EQP L +L P+Q LNWL N ILADEMGLGKT+ A AF++ LY E
Sbjct: 489 EQPSILNQSLSLKPYQKVGLNWLALVHKHGLNGILADEMGLGKTIQAIAFLAYLYQEGN- 547
Query: 805 KLPCLVLVPLSTMPNWLAEFALWAPNLNVVEYHGCAKARAIIRQYEWHASDPDNLNKKTS 864
K P L++VP ST+ NWL E LW P L V+ Y+G + R IR Y N++ K
Sbjct: 548 KGPHLIVVPASTIDNWLREVNLWCPTLKVLCYYGSQEERKQIR-Y--------NIHSKYE 598
Query: 865 SYKFNVLLTTYEMILA---DSSHLRGVPWEVLVVDEGHRXXXXXXXXXXXXXXXXXQHRV 921
Y NV++TTY ++ D S R + + DEGH +R+
Sbjct: 599 EY--NVIVTTYNCAISSSDDRSLFRRLKLNYAIFDEGHMLKNMGSIRYQHLMTINANNRL 656
Query: 922 LLTGTPLQNNIGEMYNLLNFLQPASFPSLSS-FEEKFNDLTTT---------QKVEELKK 971
LLTGTP+QNN+ E+ +LLNF+ P F S +S F+ T + +++ K+
Sbjct: 657 LLTGTPVQNNLLELMSLLNFVMPHMFSSSTSEIRRMFSSKTKSADEQSIYEKERIAHAKQ 716
Query: 972 LVAPHMLRRLKKDAMQNIPPKTERMVPVELSSIQAEYYRAMLTKNYQILRNIGKGVAQQS 1031
++ P +LRR+K++ ++ +PPK +++ +S Q + Y + + + + N+ K
Sbjct: 717 IIKPFILRRVKEEVLKQLPPKKDQIELCAMSEKQEQLYLGLFNRLKKSINNMEKNT---E 773
Query: 1032 MLNIVMQLRKVCNHPYL 1048
M N++MQLRK+ NHP L
Sbjct: 774 MCNVMMQLRKMANHPLL 790
Score = 311 (114.5 bits), Expect = 1.8e-64, Sum P(4) = 1.8e-64
Identities = 66/149 (44%), Positives = 99/149 (66%)
Query: 1070 SAKLTLLHSMLKVLYKEGHRVLIFSQMTKLLDILEDYLNIEFGPKTYERVDGSVSVGDRQ 1129
S K +L +L L ++G RV++FSQ T +LDILE L + Y R+DG + +R
Sbjct: 856 SGKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVLL--KHHQHRYLRLDGKTQISERI 913
Query: 1130 AAITRFNQDKSRFVFLLSTRSCGLGINLATADTVIIYDSDFNPHADIQAMNRAHRIGQSK 1189
I FN D FVFLLST++ GLGINL +A+ VI++D D NP+ D QA +R HR+GQ+K
Sbjct: 914 HLIDEFNTDMDIFVFLLSTKAGGLGINLTSANVVILHDIDCNPYNDKQAEDRCHRVGQTK 973
Query: 1190 RLLVYRLVVRASVEERILQLAKKKLMLDQ 1218
+LV +L+ + ++EE +L++ ++KL L+Q
Sbjct: 974 EVLVIKLISQGTIEESMLKINQQKLKLEQ 1002
Score = 51 (23.0 bits), Expect = 1.8e-64, Sum P(4) = 1.8e-64
Identities = 34/135 (25%), Positives = 57/135 (42%)
Query: 189 EKSLDSSQVDVSCSTKPENTSAGVP-VEGSSSCPNDDDEKQLNASPTDSLADTKFHPAEE 247
EK + V + + S G+P V G ++ + E Q N SP + ++ +E
Sbjct: 113 EKKFNKDTVIIVSEPSEDEESQGLPTVAGRNNNDLSELEDQQNLSPLSYSRNIRY---KE 169
Query: 248 VLPHSQVTKSEQNDEVPVEKHEKSSTNGSSGIKFVLAIGASERD--RKRK------P--- 296
++P ++ S ++ E +ST + +L G +E RKRK P
Sbjct: 170 IIP--ELVYS-----FAIKLIESTSTMDGAIAAALLMFGDAEGGGPRKRKLSSSSEPYEE 222
Query: 297 -EVKDEDSQKKLRVD 310
E D+ S KK R+D
Sbjct: 223 DEFNDDQSIKKKRLD 237
Score = 46 (21.3 bits), Expect = 2.3e-64, Sum P(3) = 2.3e-64
Identities = 13/50 (26%), Positives = 22/50 (44%)
Query: 33 NGKEENLVTSESPRNTPSAKRRLKNEINADRSSTKKKGNDGYYYECVICD 82
NGKE + + P+N K + K + KK+ + + + VI D
Sbjct: 311 NGKEVSSRSQNYPKNAAKTKLKQKCSMKPQNGFNKKRKKNVFNPKRVIED 360
Score = 42 (19.8 bits), Expect = 1.8e-64, Sum P(4) = 1.8e-64
Identities = 11/39 (28%), Positives = 20/39 (51%)
Query: 546 NDKMVVEDADVSLRDNEGLTVSEIHITCESTDKDVDVGK 584
N K V+ED++ + G ++ E + + E +D GK
Sbjct: 353 NPKRVIEDSEYDSGSDVGSSLDEDYSSGEEVMEDGYKGK 391
Score = 40 (19.1 bits), Expect = 9.9e-64, Sum P(3) = 9.9e-64
Identities = 18/77 (23%), Positives = 33/77 (42%)
Query: 177 GKSVLALGVKSLEKSLDSSQVDVSCSTKPENTSAGVPVEGSSSCPND----DDEKQLNAS 232
GK V + ++ K+ +++ CS KP+N G + + N +D + + S
Sbjct: 312 GKEVSSRS-QNYPKNAAKTKLKQKCSMKPQN---GFNKKRKKNVFNPKRVIEDSEYDSGS 367
Query: 233 PTDSLADTKFHPAEEVL 249
S D + EEV+
Sbjct: 368 DVGSSLDEDYSSGEEVM 384
Score = 40 (19.1 bits), Expect = 2.5e-22, Sum P(3) = 2.5e-22
Identities = 7/20 (35%), Positives = 12/20 (60%)
Query: 555 DVSLRDNEGLTVSEIHITCE 574
D+ D E +T E+H+ C+
Sbjct: 819 DLIFEDMEVMTDFELHVLCK 838
Score = 39 (18.8 bits), Expect = 6.2e-22, Sum P(4) = 6.2e-22
Identities = 8/19 (42%), Positives = 12/19 (63%)
Query: 1057 GSVEFLHEMRIKASAKLTL 1075
GS+ + H M I A+ +L L
Sbjct: 640 GSIRYQHLMTINANNRLLL 658
>UNIPROTKB|F6XTU7 [details] [associations]
symbol:SMARCA1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0005634 "nucleus" evidence=IEA]
[GO:0043044 "ATP-dependent chromatin remodeling" evidence=IEA]
[GO:0031491 "nucleosome binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF09110
Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194 SMART:SM00490
SMART:SM00717 GO:GO:0005524 GO:GO:0003677 Gene3D:1.10.10.60
SUPFAM:SSF46689 InterPro:IPR017884 PROSITE:PS51293 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0016585
GO:GO:0031491 GO:GO:0043044 GeneTree:ENSGT00680000100002
SUPFAM:SSF101224 OMA:PMSQKRK EMBL:AAEX03026896
Ensembl:ENSCAFT00000029649 Uniprot:F6XTU7
Length = 1075
Score = 678 (243.7 bits), Expect = 3.3e-64, Sum P(2) = 3.3e-64
Identities = 185/550 (33%), Positives = 279/550 (50%)
Query: 696 KLDEPALEKYSHLTDLFVQFERQTLKKDASEDELPRGKGDCQQSEIVALTEQPEELKGGA 755
KL P ++K L + + + + EDE + + V P +KGG
Sbjct: 124 KLGRPRIKK-DDKQSLISAGDYRHRRTEQEEDEELLSESRKTSNVCVRFEVSPSYVKGGP 182
Query: 756 LFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLS 815
L +Q+ LNWL + N ILADEMGLGKT+ A + L P +VLVP S
Sbjct: 183 LRDYQIRGLNWLISLYENGVNGILADEMGLGKTLQTIALLGYLKHYRNIPGPHMVLVPKS 242
Query: 816 TMPNWLAEFALWAPNLNVVEYHGCAKARAIIRQYEWHASDPDNLNKKTSSYKFNVLLTTY 875
T+ NW+ EF W P+L V+ + G ARA + E + D V +T+Y
Sbjct: 243 TLYNWMNEFKRWVPSLRVICFVGDKDARAAFIRDEMMPGEWD------------VCVTSY 290
Query: 876 EMILADSSHLRGVPWEVLVVDEGHRXXXXXXXXXXXXXXXXXQHRVLLTGTPLQNNIGEM 935
EM++ + S + W LV+DE HR +R+LLTGTPLQNN+ E+
Sbjct: 291 EMVIKEKSVFKKFHWRYLVIDEAHRIKNEKSKLSEIVREFKSTNRLLLTGTPLQNNLHEL 350
Query: 936 YNLLNFLQPASFPSLSSFEEKF---NDLTTTQKVEELKKLVAPHMLRRLKKDAMQNIPPK 992
+ LLNFL P F S F+ F N L + VE L ++ P +LRR+K D +++PPK
Sbjct: 351 WALLNFLLPDVFNSADDFDSWFDTKNCLGDQKLVERLHAVLKPFLLRRIKTDVEKSLPPK 410
Query: 993 TERMVPVELSSIQAEYYRAMLTKNYQILRNIGKGVAQQSMLNIVMQLR--KVCNHPYLIP 1050
E V + LS +Q E++ + + N K + +LN++M LR K C + +
Sbjct: 411 KEIKVYLGLSKMQREWFVILAFFISENSNNSNKN-HKLDILNVIMLLREAKCCGASFCL- 468
Query: 1051 GTEPDSGSVEFLHEMRIKASAK--LTLLHSMLKVLYKEGHRVLIFSQMTKLLDILED-YL 1107
+ +V +++++ I +K +++L + E HR + L E+ +L
Sbjct: 469 --QKKKQNVAYINKVHINYCSKGIISMLDYCKTEI--EQHRCRCLCILNPLNTFFENGFL 524
Query: 1108 NIEFGPKTYERVDGS-------------VSVGDRQAAITRFNQ-DKSRFVFLLSTRSCGL 1153
I K Y + V + ++ AI FN + S+F+F+LSTR+ GL
Sbjct: 525 QIHIKHKPYSAIQNDPFPWNEDDTKYLFVYIIYKKEAIEAFNAPNSSKFIFMLSTRAGGL 584
Query: 1154 GINLATADTVIIYDSDFNPHADIQAMNRAHRIGQSKRLLVYRLVVRASVEERILQLAKKK 1213
GINLA+AD VI+YDSD+NP D+QAM+RAHRIGQ K + V+RL+ +VEERI++ A+ K
Sbjct: 585 GINLASADVVILYDSDWNPQVDLQAMDRAHRIGQKKPVRVFRLITDNTVEERIVERAEIK 644
Query: 1214 LMLDQLFVNK 1223
L LD + + +
Sbjct: 645 LRLDSIVIQQ 654
Score = 268 (99.4 bits), Expect = 3.6e-19, Sum P(2) = 3.6e-19
Identities = 61/159 (38%), Positives = 99/159 (62%)
Query: 1128 RQAAITRFNQ-DKSRFVFLLSTRSCGLGINLATADTVIIYDSDFNPHADIQAMNRAHRIG 1186
++ AI FN + S+F+F+LSTR+ GLGINLA+AD VI+YDSD+NP D+QAM+RAHRIG
Sbjct: 558 KKEAIEAFNAPNSSKFIFMLSTRAGGLGINLASADVVILYDSDWNPQVDLQAMDRAHRIG 617
Query: 1187 QSKRLLVYRLVVRASVEERILQLAKKKLMLDQLFVNKSG---------SQKEVEDILRWG 1237
Q K + V+RL+ +VEERI++ A+ KL LD + + + +++E+ ++R G
Sbjct: 618 QKKPVRVFRLITDNTVEERIVERAEIKLRLDSIVIQQGRLIDQQSNKLAKEEMLQMIRHG 677
Query: 1238 TEELFNDSPG-INGKDMGENNTSIEEAVRDLEQKHRKRG 1275
+F + +D+ E+ ++ ++ +K G
Sbjct: 678 ATHVFASKESELTDEDITTLLERGEKKTAEMNERLQKMG 716
Score = 57 (25.1 bits), Expect = 3.3e-64, Sum P(2) = 3.3e-64
Identities = 25/115 (21%), Positives = 45/115 (39%)
Query: 263 VPVEKHEKSSTNGSSGIKFVLAIGASERDRKRKPEVKDE-DSQKKLRVDXXXXXXXXXXX 321
V EK EK S + LA AS+ +++ PE +++ + + R +
Sbjct: 48 VATEKGEKKKEKNVSSFQLKLAAKASKSEKEMDPEYEEKMKADRAKRFEFLLKQTELFAH 107
Query: 322 XXXXIGTLSPGTSKLHEK---QRTNNDEVSASLCEVDVGTKGLDAQRKDELAEET 373
SP TS L+ K R D+ + + D + + + +EL E+
Sbjct: 108 FIQPSAQKSP-TSPLNMKLGRPRIKKDDKQSLISAGDYRHRRTEQEEDEELLSES 161
Score = 41 (19.5 bits), Expect = 1.6e-62, Sum P(2) = 1.6e-62
Identities = 11/39 (28%), Positives = 14/39 (35%)
Query: 29 PGLSNGKEENLVTSESPRNTPSAKRRLKNEINADRSSTK 67
PG S KEE + + + K K E N K
Sbjct: 29 PGPSTSKEEGAAAAATEATVATEKGEKKKEKNVSSFQLK 67
>RGD|1309640 [details] [associations]
symbol:Smarcad1 "SWI/SNF-related, matrix-associated
actin-dependent regulator of chromatin, subfamily a, containing
DEAD/H box 1`" species:10116 "Rattus norvegicus" [GO:0000018
"regulation of DNA recombination" evidence=IEA;ISO] [GO:0000729
"DNA double-strand break processing" evidence=ISO;ISS] [GO:0000792
"heterochromatin" evidence=ISO;ISS] [GO:0003677 "DNA binding"
evidence=IEA;ISO] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO;ISS] [GO:0035861 "site of double-strand break"
evidence=ISO;ISS] [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=ISO;ISS] [GO:0043596 "nuclear replication fork"
evidence=IEA;ISO] [GO:0051304 "chromosome separation"
evidence=ISO;ISS] [GO:0070932 "histone H3 deacetylation"
evidence=ISO;ISS] [GO:0070933 "histone H4 deacetylation"
evidence=ISO;ISS] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR003892
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51140 PROSITE:PS51194
SMART:SM00490 RGD:1309640 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
GO:GO:0043596 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0043044 GO:GO:0000792 GO:GO:0070932
GO:GO:0070933 GO:GO:0000729 GO:GO:0000018 GO:GO:0035861 KO:K14439
GeneTree:ENSGT00630000089890 GO:GO:0051304 OMA:KNQRGIQ CTD:56916
OrthoDB:EOG4RV2QW EMBL:AABR03032021 IPI:IPI00765483
RefSeq:NP_001101334.2 UniGene:Rn.7758 ProteinModelPortal:D3Z9Z9
Ensembl:ENSRNOT00000008585 GeneID:312398 KEGG:rno:312398
UCSC:RGD:1309640 Uniprot:D3Z9Z9
Length = 1024
Score = 439 (159.6 bits), Expect = 4.4e-63, Sum P(5) = 4.4e-63
Identities = 111/317 (35%), Positives = 167/317 (52%)
Query: 746 EQPEELKGG-ALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKA 804
EQP L +L P+Q LNWL N ILADEMGLGKT+ A AF++ L+ E
Sbjct: 484 EQPSLLNQSLSLKPYQKVGLNWLALVHKHGLNGILADEMGLGKTIQAIAFLAYLFQEGN- 542
Query: 805 KLPCLVLVPLSTMPNWLAEFALWAPNLNVVEYHGCAKARAIIRQYEWHASDPDNLNKKTS 864
K P L++VP ST+ NWL E LW P LNV+ Y+G + R IR N++ K
Sbjct: 543 KGPHLIVVPASTIDNWLREVNLWCPTLNVLCYYGSQEERKQIRF---------NIHNKYE 593
Query: 865 SYKFNVLLTTYEMILA---DSSHLRGVPWEVLVVDEGHRXXXXXXXXXXXXXXXXXQHRV 921
Y NV++TTY ++ D S R + + DEGH ++R+
Sbjct: 594 DY--NVIVTTYNCAISSSDDRSLFRRLKLNYAIFDEGHMLKNMGSIRYQHLMTINARNRL 651
Query: 922 LLTGTPLQNNIGEMYNLLNFLQPASFPSLSS-FEEKFNDLTTT---------QKVEELKK 971
LLTGTP+QNN+ E+ +LLNF+ P F S +S F+ T +++ K+
Sbjct: 652 LLTGTPVQNNLLELMSLLNFVMPHMFSSSTSEIRRMFSSKTKPADEQSIYEKERIAHAKQ 711
Query: 972 LVAPHMLRRLKKDAMQNIPPKTERMVPVELSSIQAEYYRAMLTKNYQILRNIGKGVAQQS 1031
++ P +LRR+K++ ++ +PPK +++ +S Q + Y + + + + N+ K
Sbjct: 712 IIKPFILRRVKEEVLKLLPPKKDQIELCAMSEKQEQLYSGLFNRLKKSINNLEKNT---E 768
Query: 1032 MLNIVMQLRKVCNHPYL 1048
M N++MQLRK+ NHP L
Sbjct: 769 MCNVMMQLRKMANHPLL 785
Score = 309 (113.8 bits), Expect = 4.4e-63, Sum P(5) = 4.4e-63
Identities = 66/149 (44%), Positives = 98/149 (65%)
Query: 1070 SAKLTLLHSMLKVLYKEGHRVLIFSQMTKLLDILEDYLNIEFGPKTYERVDGSVSVGDRQ 1129
S K L +L L ++G RV++FSQ T +LDILE L + Y R+DG + +R
Sbjct: 851 SGKFRTLGCILSELKQKGDRVVLFSQFTMMLDILEVLL--KHHQHRYLRLDGKTQISERI 908
Query: 1130 AAITRFNQDKSRFVFLLSTRSCGLGINLATADTVIIYDSDFNPHADIQAMNRAHRIGQSK 1189
I FN D FVFLLST++ GLGINL +A+ VI++D D NP+ D QA +R HR+GQ+K
Sbjct: 909 HLIDEFNTDMDIFVFLLSTKAGGLGINLTSANVVILHDIDCNPYNDKQAEDRCHRVGQTK 968
Query: 1190 RLLVYRLVVRASVEERILQLAKKKLMLDQ 1218
+LV +L+ + ++EE +L++ ++KL L+Q
Sbjct: 969 EVLVIKLISQGTIEESMLKINQQKLKLEQ 997
Score = 55 (24.4 bits), Expect = 1.1e-22, Sum P(5) = 1.1e-22
Identities = 29/99 (29%), Positives = 47/99 (47%)
Query: 672 SSKDGTREAFVKWTGLPYDECT-WEKLDEPALEKYSHLTDLFVQFERQTLKKDASEDELP 730
SS R F T P DE + +EK E+ +H + F + +K++ + LP
Sbjct: 679 SSTSEIRRMFSSKTK-PADEQSIYEK------ERIAHAKQIIKPFILRRVKEEVLK-LLP 730
Query: 731 RGKGDCQQSEIVALTEQPEELKGGALFPHQLEALNWLRK 769
K Q E+ A++E+ E+L G LF +++N L K
Sbjct: 731 PKK---DQIELCAMSEKQEQLYSG-LFNRLKKSINNLEK 765
Score = 53 (23.7 bits), Expect = 4.4e-63, Sum P(5) = 4.4e-63
Identities = 29/168 (17%), Positives = 65/168 (38%)
Query: 429 DDRHSDDFLVSENHNKILEENLACDTDLDAEVTENLA-ELS---PNVIRSSDEECMKNDI 484
D+ + D L ++ E N + + + E E++ +L PN + E +K
Sbjct: 219 DEANDDQSLKKPRGDRREESNESAEASSNWEKQESIVLKLQKEFPNFDKQELREVLKEHE 278
Query: 485 -----GVDRIQVYRRSVTKECKVTKECKGENAIDLLREDDKDSDPVAVNGKVQDESAVST 539
++ ++V+ +C E + + K++ + + K+ +
Sbjct: 279 WMYTEALESLKVFAEDQDVQCASQSEVTNGKEVARNQNYSKNAAKIKMKQKISMKPQNGF 338
Query: 540 EDLGERN---DKMVVEDADVSLRDNEGLTVSEIHITCESTDKDVDVGK 584
++N K VED++ + G ++ E + +CE +D GK
Sbjct: 339 NKKRKKNVFNPKKAVEDSEYDSGSDAGSSLDEDYSSCEEVMEDGYKGK 386
Score = 45 (20.9 bits), Expect = 5.2e-63, Sum P(4) = 5.2e-63
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 117 PKCTQKNDQ----LKPISNLDSISKRARSKI 143
PKC+QK Q L+P +N +++ + SKI
Sbjct: 403 PKCSQKKAQKIIELRPFNNWETLFTKM-SKI 432
Score = 40 (19.1 bits), Expect = 6.4e-21, Sum P(4) = 6.4e-21
Identities = 7/20 (35%), Positives = 12/20 (60%)
Query: 555 DVSLRDNEGLTVSEIHITCE 574
D+ D E +T E+H+ C+
Sbjct: 814 DLIFEDMEVMTDFELHVLCK 833
Score = 39 (18.8 bits), Expect = 5.2e-63, Sum P(4) = 5.2e-63
Identities = 13/49 (26%), Positives = 22/49 (44%)
Query: 21 KRRKLPCGPGLSNGKEENLVTSESPRNTPSAKRRLKNEINADRSSTKKK 69
++RKL S EE+ + P RR ++ +A+ SS +K
Sbjct: 205 RKRKLSSS---SEAYEEDEANDDQSLKKPRGDRREESNESAEASSNWEK 250
Score = 38 (18.4 bits), Expect = 4.4e-63, Sum P(5) = 4.4e-63
Identities = 11/33 (33%), Positives = 14/33 (42%)
Query: 26 PCGPGLSNGKEENLVTSESPRNTPSAKRRLKNE 58
P P + +EEN S NTP + K E
Sbjct: 32 PSSPISLSAEEENAEGEVSRANTPDSDVTEKTE 64
Score = 37 (18.1 bits), Expect = 4.4e-63, Sum P(5) = 4.4e-63
Identities = 10/39 (25%), Positives = 18/39 (46%)
Query: 188 LEKSLDSSQVDVSCSTKPENTSAGVPVEGSSSCPNDDDE 226
++ S DS V +CS+ + S P++D+E
Sbjct: 93 IDLSSDSEDVSPNCSSTVQEKKFSKDTVIIVSEPSEDEE 131
Score = 37 (18.1 bits), Expect = 7.3e-21, Sum P(5) = 7.3e-21
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 1057 GSVEFLHEMRIKASAKLTL 1075
GS+ + H M I A +L L
Sbjct: 635 GSIRYQHLMTINARNRLLL 653
>TAIR|locus:2062999 [details] [associations]
symbol:BRM "AT2G46020" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS;IDA] [GO:0004386
"helicase activity" evidence=ISS] [GO:0005524 "ATP binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISM;IEA;IDA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0010199 "organ boundary specification between
lateral organs and the meristem" evidence=IGI] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=NAS;TAS] [GO:0040029
"regulation of gene expression, epigenetic" evidence=RCA;IMP]
[GO:0005829 "cytosol" evidence=IDA] [GO:0003682 "chromatin binding"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50014
PROSITE:PS51194 SMART:SM00297 SMART:SM00490 SMART:SM00951
GO:GO:0005829 GO:GO:0005524 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0006355 GO:GO:0003677 GO:GO:0006351 GO:GO:0004386
EMBL:AC005397 HSSP:Q97XQ5 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0016585 GO:GO:0043044
Gene3D:1.20.920.10 SUPFAM:SSF47370 PROSITE:PS00633 EMBL:AC004665
EMBL:AJ703891 IPI:IPI00529654 IPI:IPI00541940 PIR:G84897
RefSeq:NP_182126.2 RefSeq:NP_973695.1 UniGene:At.48598
ProteinModelPortal:Q6EVK6 SMR:Q6EVK6 IntAct:Q6EVK6 STRING:Q6EVK6
PaxDb:Q6EVK6 PRIDE:Q6EVK6 EnsemblPlants:AT2G46020.2 GeneID:819210
KEGG:ath:AT2G46020 TAIR:At2g46020 HOGENOM:HOG000029719
InParanoid:Q6EVK6 KO:K11647 OMA:EMNAPKE PhylomeDB:Q6EVK6
ProtClustDB:CLSN2681222 ArrayExpress:Q6EVK6 Genevestigator:Q6EVK6
GO:GO:0010199 GO:GO:0040029 Uniprot:Q6EVK6
Length = 2193
Score = 400 (145.9 bits), Expect = 1.2e-62, Sum P(3) = 1.2e-62
Identities = 133/423 (31%), Positives = 216/423 (51%)
Query: 960 LTTTQKV---EELKKLVAPHMLRRLKKDAMQNIPPKTERMVPVELSSIQAEYY---RAML 1013
L T +KV L +++ P MLRR +D ++P K ++ +S+IQ+ Y +A
Sbjct: 1188 LETEKKVIVIHRLHQILEPFMLRRRVEDVEGSLPAKVSVVLRCRMSAIQSAVYDWIKATG 1247
Query: 1014 T-------KNYQILRN-IGKGVAQQSMLNIVMQLRKVCNHPYLIPGTEPDSGSVEFLHEM 1065
T + + +N I + +++ N M+LRK CNHP L P +F +
Sbjct: 1248 TLRVDPDDEKLRAQKNPIYQAKIYRTLNNRCMELRKACNHPLL---NYPYFN--DFSKDF 1302
Query: 1066 RIKASAKLTLLHSMLKVLYKEGHRVLIFSQMTKLLDILEDYLNIEFGPKTYERVDGSVSV 1125
+++ KL +L +L L + GHRVL+FS MTKLLDILE+YL ++ Y R+DG+ S+
Sbjct: 1303 LVRSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYL--QWRRLVYRRIDGTTSL 1360
Query: 1126 GDRQAAITRFNQ-DKSRFVFLLSTRSCGLGINLATADTVIIYDSDFNPHADIQAMNRAHR 1184
DR++AI FN D F+FLLS R+ G G+NL TADTV+IYD D NP + QA+ RAHR
Sbjct: 1361 EDRESAIVDFNDPDTDCFIFLLSIRAAGRGLNLQTADTVVIYDPDPNPKNEEQAVARAHR 1420
Query: 1185 IGQSKRLLVYRLVVRASVEERILQLAKKKLMLDQLFVNKSGSQKEVEDILRWGTEELFND 1244
IGQ++ + V + + A VE+ L +K+ D+L +SG ++ED + G +
Sbjct: 1421 IGQTREVKV--IYMEAVVEK--LSSHQKE---DEL---RSGGSVDLEDDMA-GKDRYIGS 1469
Query: 1245 SPGINGKDMGENNTSI-EEAVR----DLEQKHRKRGGGLGDVYQDKCTEGSTKIVWDE-- 1297
G+ ++ + + +E + D H +R L + D+ E + V D
Sbjct: 1470 IEGLIRNNIQQYKIDMADEVINAGRFDQRTTHEERRMTLETLLHDE--ERYQETVHDVPS 1527
Query: 1298 -NAIARLLDRSNLQSGSTDLA--EGDLENDMLGSVKATEWNEETTEDQAESPVAAVDDAS 1354
+ + R++ RS + D E D +M + +W +T + + VA +
Sbjct: 1528 LHEVNRMIARSEEEVELFDQMDEEFDWTEEMTNHEQVPKWLRASTRE-VNATVADLSKKP 1586
Query: 1355 AEN 1357
++N
Sbjct: 1587 SKN 1589
Score = 342 (125.4 bits), Expect = 1.2e-62, Sum P(3) = 1.2e-62
Identities = 80/220 (36%), Positives = 118/220 (53%)
Query: 739 SEIVALTEQPEELKGGALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSL 798
+E+V QP L+ G L +QL L W+ ++ N ILADEMGLGKTV A I+ L
Sbjct: 966 NEVVV--RQPSMLQAGTLRDYQLVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYL 1023
Query: 799 YCEFKAKL-PCLVLVPLSTMPNWLAEFALWAPNLNVVEYHGCAKARAIIRQYEWHASDPD 857
EFK P L++VP + + NW +E W P+++ + Y G R+ +
Sbjct: 1024 M-EFKGNYGPHLIIVPNAVLVNWKSELHTWLPSVSCIYYVGTKDQRSKL----------- 1071
Query: 858 NLNKKTSSYKFNVLLTTYEMILADSSHLRGVPWEVLVVDEGHRXXXXXXXXXXXXXXXXX 917
+++ + KFNVL+TTYE I+ D S L V W+ +++DE R
Sbjct: 1072 -FSQEVCAMKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRC 1130
Query: 918 QHRVLLTGTPLQNNIGEMYNLLNFLQPASFPSLSSFEEKF 957
Q R+LLTGTPLQN++ E+++LLN L P F + +F + F
Sbjct: 1131 QRRLLLTGTPLQNDLKELWSLLNLLLPDVFDNRKAFHDWF 1170
Score = 58 (25.5 bits), Expect = 1.2e-62, Sum P(3) = 1.2e-62
Identities = 29/122 (23%), Positives = 48/122 (39%)
Query: 121 QKNDQLKPISNLDSISKRARSKIITIKSQSGVKSSGADKVSQIFGNS-ILARKRSNKGKS 179
Q Q+ P + + R+ K T + Q+ G + + N I +++ N G +
Sbjct: 505 QTQRQISPA--IGKVQDRSSDK--TGEDQARSLECGKESQAAASSNGPIFSKEEDNVGDT 560
Query: 180 VLAL--GVKSLEKSLDSSQVDVSCSTKPENTSAGVPVEGSSSCPNDDDEKQLNASPTDSL 237
+AL G L ++L +TK E + PV+ D Q N +DS
Sbjct: 561 EVALTTGHSQLFQNLGKEATSTDVATKEEQQTDVFPVKSDQGA---DSSTQKNPR-SDST 616
Query: 238 AD 239
AD
Sbjct: 617 AD 618
Score = 51 (23.0 bits), Expect = 2.8e-32, Sum P(3) = 2.8e-32
Identities = 18/69 (26%), Positives = 31/69 (44%)
Query: 819 NWLAEFALWAPNLNVVEYHGCAKARAIIRQYEWHASDPDNLNKKTSSYKFNVLLTTYEMI 878
+W A A N V +YH ++R++ D D NK+ + K N + EM+
Sbjct: 808 HWAIRDARTARNRGVAKYH-----EKMLREFS-KRKD-DGRNKRMEALKNNDVERYREML 860
Query: 879 LADSSHLRG 887
L +++ G
Sbjct: 861 LEQQTNMPG 869
Score = 49 (22.3 bits), Expect = 6.7e-26, Sum P(3) = 6.7e-26
Identities = 32/134 (23%), Positives = 53/134 (39%)
Query: 966 VEELKKLVAPHMLRRLKKDAMQNIPPKTERMVPVELSSIQAEYYRAMLTKNYQILRNIGK 1025
+++ K+V + RR+ K+ Q +P T ++ Y A N LR I
Sbjct: 1900 IQKRCKIVISKLQRRIDKEGQQIVPMLTNLWKRIQNG------YAAGGVNNLLELREIDH 1953
Query: 1026 GVAQQSMLNIVMQLRKVCNHPYLIPGTEPDSGSVEFLHEMRIKASAKLTLLHSMLKVLY- 1084
V + VM+L + ++ G G F HE+R +A L +LK+ +
Sbjct: 1954 RVERLEYAG-VMELAS--DVQLMLRGAMQFYG---FSHEVRSEAKKVHNLFFDLLKMSFP 2007
Query: 1085 ----KEGHRVLIFS 1094
+E L FS
Sbjct: 2008 DTDFREARNALSFS 2021
Score = 41 (19.5 bits), Expect = 7.4e-61, Sum P(3) = 7.4e-61
Identities = 9/26 (34%), Positives = 16/26 (61%)
Query: 165 GNSILARKRSNKGKSVLALGVKSLEK 190
G L++KR++ K + L K+LE+
Sbjct: 693 GAEFLSKKRTDSLKKINGLLAKNLER 718
Score = 41 (19.5 bits), Expect = 4.5e-25, Sum P(3) = 4.5e-25
Identities = 13/37 (35%), Positives = 18/37 (48%)
Query: 1108 NIEFGPK-TYERVDGSVSVGDRQAAITRFNQDKSRFV 1143
+I P+ T ERVDGS + + R + K R V
Sbjct: 1786 SIRLRPRQTAERVDGSEMPAAQPLQVDRSYRSKLRTV 1822
>ZFIN|ZDB-GENE-050522-499 [details] [associations]
symbol:smarcad1 "SWI/SNF-related, matrix-associated
actin-dependent regulator of chromatin, subfamily a, containing
DEAD/H box 1" species:7955 "Danio rerio" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=ISS] [GO:0000729 "DNA double-strand break
processing" evidence=ISS] [GO:0035861 "site of double-strand break"
evidence=ISS] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0005694 "chromosome" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0016568 "chromatin modification" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006974 "response to DNA damage
stimulus" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR003892 InterPro:IPR009060 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51140 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-050522-499 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
GO:GO:0004386 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0043044 SUPFAM:SSF46934 GO:GO:0000729 HOGENOM:HOG000172362
GO:GO:0035861 GeneTree:ENSGT00630000089890 OMA:KEERYMA
HOVERGEN:HBG055804 EMBL:AL807792 IPI:IPI00492619 UniGene:Dr.3950
ProteinModelPortal:B0R061 Ensembl:ENSDART00000091409
ArrayExpress:B0R061 Bgee:B0R061 Uniprot:B0R061
Length = 972
Score = 426 (155.0 bits), Expect = 2.2e-62, Sum P(4) = 2.2e-62
Identities = 107/315 (33%), Positives = 168/315 (53%)
Query: 746 EQPEELKGGA-LFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKA 804
+QP+ L L +QL L WL + ILADEMGLGKT+ A AF++ LY E
Sbjct: 437 KQPKVLNSNLKLQAYQLIGLKWLILLHQHKLSGILADEMGLGKTIQAIAFLAHLY-EKGI 495
Query: 805 KLPCLVLVPLSTMPNWLAEFALWAPNLNVVEYHGCAKARAIIRQYEWHASDPDNLNKKTS 864
K P L+ VP ST+ NW+ E LW P+L V+ Y+G + R +RQ D L T
Sbjct: 496 KGPHLITVPSSTLDNWVRELGLWCPSLKVLIYYGSVEDRKYLRQ--------DIL---TG 544
Query: 865 SYKFNVLLTTYEMILA---DSSHLRGVPWEVLVVDEGHRXXXXXXXXXXXXXXXXXQHRV 921
FN++++TY + + D S R + + V DEGH +HR+
Sbjct: 545 LIDFNIIVSTYNLTIGNDHDRSLFRKLKLKYAVFDEGHMLKNMNSLRYRHLMTINAEHRL 604
Query: 922 LLTGTPLQNNIGEMYNLLNFLQPASFPSLSS-FEEKFNDLTTTQ-------KVEELKKLV 973
LLTGTPLQNN+ E+ +LLNF+ P+ F S +S + F+ ++ + ++ + + ++
Sbjct: 605 LLTGTPLQNNLLELMSLLNFIMPSMFSSSTSQISKMFSTRSSEEESSFHKDRIAQARLIM 664
Query: 974 APHMLRRLKKDAMQNIPPKTERMVPVELSSIQAEYYRAMLTKNYQILRNIGKGVAQQSML 1033
P +LRR+K + ++ +PPK E++ +S Q + Y + + L+ G ++ +
Sbjct: 665 KPFILRRVKSEVLKELPPKMEKIEMCPMSDAQHKLYDILFKR----LKKTPNG-DKRELC 719
Query: 1034 NIVMQLRKVCNHPYL 1048
N++MQLRK+ NHP L
Sbjct: 720 NVMMQLRKMANHPLL 734
Score = 300 (110.7 bits), Expect = 2.2e-62, Sum P(4) = 2.2e-62
Identities = 67/171 (39%), Positives = 106/171 (61%)
Query: 1062 LHEMRIKASAKLTLLHSMLKVLYKEGHRVLIFSQMTKLLDILEDYLNIEFGPKTYERVDG 1121
L + I S K LL L L ++G RV++FSQ T +LDI+E + ++ Y R+DG
Sbjct: 792 LEKALILDSGKFALLTKTLAKLKEKGDRVVLFSQFTMMLDIVE--ILLKHLDHQYVRLDG 849
Query: 1122 SVSVGDRQAAITRFNQDKSRFVFLLSTRSCGLGINLATADTVIIYDSDFNPHADIQAMNR 1181
S + +R I ++N + FVFLLSTR+ G GINLA+A+TVI++D D NP D QA +R
Sbjct: 850 STPMAERIGLIDKYNTNPEIFVFLLSTRAGGQGINLASANTVILHDIDCNPFNDKQAEDR 909
Query: 1182 AHRIGQSKRLLVYRLVVRASVEERILQLAKKKLMLDQLFVNKSGSQKEVED 1232
HR+GQ++ + V +L+ + S+E+ +L++ ++KL L+Q G + +
Sbjct: 910 CHRMGQTRTVQVIKLISKDSIEDCMLRVGQEKLKLEQDMTTDEGEDGAITE 960
Score = 55 (24.4 bits), Expect = 2.2e-62, Sum P(4) = 2.2e-62
Identities = 31/165 (18%), Positives = 71/165 (43%)
Query: 399 FELQQVDRVLGCRVKGDDTSSSCHISATATDDRHSDDFLVSENHNKILEENLACDTDLDA 458
F Q+ D +G K D S+S + A + F + ++LE+ ++ D ++
Sbjct: 9 FRFQR-DNAVGIHRKSPDGSNSDKENKQAHQRKADGQFPSGKTSRQVLED-VSSDDEVVR 66
Query: 459 EVTENLAELSPNVIRSSDEECMKNDIGVDRIQVYRRSVTKECKVTKECKGENAIDLLRED 518
++ ++L ++ + +++ +K + + Q ++ + + + T G A L+
Sbjct: 67 MGKDSASDLQQHINKDMEDKIIKL-LEIFP-QKSKKDLLEVIENTSTLDGAVAHCLMIYG 124
Query: 519 DKDSDPVA-VNGKVQDESAVSTEDLGERNDKMVVEDADVSLRDNE 562
D+DS G+ D+ + +R+D ED D ++E
Sbjct: 125 DEDSGGRKDKGGRSDDDDQPKKKRKIQRSDSSESEDEDSEDEESE 169
Score = 44 (20.5 bits), Expect = 2.2e-62, Sum P(4) = 2.2e-62
Identities = 14/68 (20%), Positives = 32/68 (47%)
Query: 544 ERNDKMVVEDADVSLRDNE-GLTVSEIHITCESTDKDVDVGKKTSGSVAKRVQEPAVTES 602
+R D+M + D S ++E V + +S D+D + + + +Q+ ++ E
Sbjct: 295 KRGDEMPLNDVSASEDEDEIDSDVDSMSDDQDSEDED-SISGTLQDKIIQFLQDASLDEL 353
Query: 603 AQVKGKAV 610
A + G ++
Sbjct: 354 ALISGCSI 361
Score = 41 (19.5 bits), Expect = 1.6e-60, Sum P(4) = 1.6e-60
Identities = 6/26 (23%), Positives = 16/26 (61%)
Query: 509 ENAIDLLREDDKDSDPVAVNGKVQDE 534
++ +D + +D D +++G +QD+
Sbjct: 315 DSDVDSMSDDQDSEDEDSISGTLQDK 340
Score = 41 (19.5 bits), Expect = 3.4e-60, Sum P(4) = 3.4e-60
Identities = 22/102 (21%), Positives = 43/102 (42%)
Query: 121 QKNDQL--KPISNLDSISK---RARSKIITIKSQSGVKSSGADKVSQIFGNSILARKRSN 175
+K D++ +P S S+S+ A S + + S S +K+ + NS RKR +
Sbjct: 240 EKTDKITQRP-SGSSSLSRWLTAASSHVPEVSSMSALKTQKSALSKSTSKNSSFKRKRGD 298
Query: 176 KGKSVLALGVKSLEKSLDSSQVDVSCSTKPENTSAGVPVEGS 217
+ + L S + D DV + +++ + G+
Sbjct: 299 E----MPLNDVSASEDEDEIDSDVDSMSDDQDSEDEDSISGT 336
Score = 40 (19.1 bits), Expect = 1.6e-60, Sum P(4) = 1.6e-60
Identities = 12/44 (27%), Positives = 24/44 (54%)
Query: 1 MKDNSSSTSTMINRNWVLKRKRR-KLPCGPGLSNGKEENLVTSE 43
+K S+ S ++N KRKR ++P +S ++E+ + S+
Sbjct: 275 LKTQKSALSKSTSKNSSFKRKRGDEMPLND-VSASEDEDEIDSD 317
Score = 39 (18.8 bits), Expect = 5.4e-60, Sum P(4) = 5.4e-60
Identities = 19/68 (27%), Positives = 29/68 (42%)
Query: 209 SAGVPVEGSSSCPNDDDEKQLNASPTDSLADTKFHPAEEVLPHSQVTKSEQNDEVPVEKH 268
S+ VP E SS + L+ S T + K +E +P + V+ SE DE+ +
Sbjct: 263 SSHVP-EVSSMSALKTQKSALSKS-TSKNSSFKRKRGDE-MPLNDVSASEDEDEIDSDVD 319
Query: 269 EKSSTNGS 276
S S
Sbjct: 320 SMSDDQDS 327
Score = 39 (18.8 bits), Expect = 7.3e-21, Sum P(2) = 7.3e-21
Identities = 10/43 (23%), Positives = 20/43 (46%)
Query: 947 FPSLSSFEEKFNDLTTTQKVEELKKLVAPHMLRRLKKDAMQNI 989
FPS + + D+++ +V + K A + + + KD I
Sbjct: 45 FPSGKTSRQVLEDVSSDDEVVRMGKDSASDLQQHINKDMEDKI 87
Score = 37 (18.1 bits), Expect = 1.6e-60, Sum P(4) = 1.6e-60
Identities = 8/25 (32%), Positives = 14/25 (56%)
Query: 2 KDNSSSTSTMINRNWVLKRKRRKLP 26
+D S + + +LK+ +RKLP
Sbjct: 164 EDEESEEPSREKQEALLKKLKRKLP 188
WARNING: HSPs involving 514 database sequences were not reported due to the
limiting value of parameter B = 250.
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.313 0.130 0.374 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 1404 1358 0.00087 124 3 11 23 0.46 34
39 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 764
No. of states in DFA: 633 (67 KB)
Total size of DFA: 597 KB (2266 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 143.23u 0.24s 143.47t Elapsed: 00:00:06
Total cpu time: 143.38u 0.24s 143.62t Elapsed: 00:00:07
Start: Sat May 11 05:09:44 2013 End: Sat May 11 05:09:51 2013
WARNINGS ISSUED: 2