Query 042857
Match_columns 1404
No_of_seqs 765 out of 4035
Neff 6.1
Searched_HMMs 46136
Date Fri Mar 29 10:17:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042857.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042857hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0384 Chromodomain-helicase 100.0 1E-144 2E-149 1331.8 50.3 619 609-1247 223-869 (1373)
2 KOG0385 Chromatin remodeling c 100.0 4E-117 9E-122 1047.0 46.4 486 745-1247 157-655 (971)
3 KOG0386 Chromatin remodeling c 100.0 4E-97 9E-102 897.6 28.8 478 742-1235 381-878 (1157)
4 KOG0389 SNF2 family DNA-depend 100.0 1.7E-95 4E-100 867.1 39.1 465 745-1224 388-912 (941)
5 PLN03142 Probable chromatin-re 100.0 6.2E-92 1.3E-96 898.8 54.2 483 743-1245 158-651 (1033)
6 KOG0391 SNF2 family DNA-depend 100.0 5.3E-92 1.2E-96 847.7 38.5 476 751-1244 611-1429(1958)
7 KOG0388 SNF2 family DNA-depend 100.0 7E-92 1.5E-96 819.6 32.3 461 743-1224 556-1178(1185)
8 KOG0387 Transcription-coupled 100.0 4.2E-89 9.1E-94 813.9 38.3 467 746-1222 197-680 (923)
9 KOG0392 SNF2 family DNA-depend 100.0 2.5E-84 5.3E-89 793.3 38.1 457 754-1225 974-1479(1549)
10 KOG0383 Predicted helicase [Ge 100.0 5.7E-81 1.2E-85 761.1 12.1 532 607-1154 128-696 (696)
11 KOG0390 DNA repair protein, SN 100.0 3.8E-72 8.3E-77 688.5 40.7 455 753-1224 236-731 (776)
12 KOG1015 Transcription regulato 100.0 1.5E-66 3.3E-71 620.1 36.5 455 754-1222 667-1299(1567)
13 COG0553 HepA Superfamily II DN 100.0 1.6E-65 3.4E-70 667.4 37.1 461 751-1223 334-845 (866)
14 KOG1002 Nucleotide excision re 100.0 5.1E-65 1.1E-69 578.8 33.2 459 742-1224 172-773 (791)
15 KOG4439 RNA polymerase II tran 100.0 3E-63 6.4E-68 584.6 33.7 462 744-1225 315-883 (901)
16 KOG1000 Chromatin remodeling p 100.0 1.1E-55 2.5E-60 504.4 31.2 408 755-1219 198-622 (689)
17 KOG1016 Predicted DNA helicase 100.0 2.2E-54 4.7E-59 507.9 23.0 462 755-1237 254-891 (1387)
18 PRK04914 ATP-dependent helicas 100.0 3.8E-52 8.2E-57 532.2 40.5 416 754-1221 151-626 (956)
19 KOG1001 Helicase-like transcri 100.0 6.6E-48 1.4E-52 478.1 24.9 441 758-1221 135-671 (674)
20 PF00176 SNF2_N: SNF2 family N 100.0 1.7E-41 3.8E-46 388.1 25.4 276 759-1049 1-299 (299)
21 TIGR00603 rad25 DNA repair hel 100.0 6.1E-36 1.3E-40 372.5 36.5 342 753-1209 253-616 (732)
22 PRK13766 Hef nuclease; Provisi 100.0 1.9E-32 4.1E-37 354.3 40.1 430 754-1214 14-493 (773)
23 KOG0298 DEAD box-containing he 100.0 2E-29 4.4E-34 314.9 21.4 261 772-1048 372-690 (1394)
24 COG1111 MPH1 ERCC4-like helica 100.0 1.4E-26 3.1E-31 270.3 37.0 419 755-1215 15-496 (542)
25 COG1061 SSL2 DNA or RNA helica 100.0 2.5E-26 5.5E-31 278.7 33.1 363 753-1212 34-406 (442)
26 PHA02558 uvsW UvsW helicase; P 99.9 9.4E-26 2E-30 278.3 35.0 339 753-1201 112-456 (501)
27 PTZ00110 helicase; Provisional 99.9 3.1E-23 6.6E-28 258.1 33.1 320 755-1200 152-484 (545)
28 PLN00206 DEAD-box ATP-dependen 99.9 6.9E-23 1.5E-27 253.9 33.7 316 755-1199 143-474 (518)
29 TIGR00643 recG ATP-dependent D 99.9 2.8E-22 6E-27 253.6 38.3 310 754-1192 234-560 (630)
30 PRK11776 ATP-dependent RNA hel 99.9 6.8E-23 1.5E-27 250.8 31.0 315 755-1200 26-349 (460)
31 PRK10590 ATP-dependent RNA hel 99.9 1.2E-22 2.7E-27 248.2 30.7 326 755-1212 23-362 (456)
32 PRK01297 ATP-dependent RNA hel 99.9 1.9E-22 4.2E-27 247.7 32.6 316 755-1199 109-441 (475)
33 TIGR00580 mfd transcription-re 99.9 1.6E-22 3.4E-27 261.6 33.1 357 754-1249 450-817 (926)
34 PRK04837 ATP-dependent RNA hel 99.9 9.6E-23 2.1E-27 246.9 28.8 315 755-1199 30-361 (423)
35 TIGR00614 recQ_fam ATP-depende 99.9 1.6E-22 3.4E-27 248.1 29.7 307 755-1194 11-329 (470)
36 PRK11192 ATP-dependent RNA hel 99.9 3.7E-22 8E-27 242.5 32.5 313 755-1193 23-347 (434)
37 PRK11634 ATP-dependent RNA hel 99.9 6.8E-22 1.5E-26 248.7 34.9 325 755-1211 28-361 (629)
38 PRK10917 ATP-dependent DNA hel 99.9 1E-21 2.2E-26 250.3 36.6 306 754-1191 260-582 (681)
39 PRK10689 transcription-repair 99.9 6.3E-22 1.4E-26 260.8 32.8 360 755-1254 600-971 (1147)
40 COG1200 RecG RecG-like helicas 99.9 1.3E-21 2.8E-26 237.6 31.5 302 755-1187 262-580 (677)
41 PRK04537 ATP-dependent RNA hel 99.9 8.6E-22 1.9E-26 246.1 31.1 315 755-1199 31-363 (572)
42 KOG0354 DEAD-box like helicase 99.9 1.7E-21 3.7E-26 239.5 32.9 408 754-1198 61-527 (746)
43 KOG0331 ATP-dependent RNA heli 99.9 5.9E-22 1.3E-26 237.6 28.0 315 755-1193 113-443 (519)
44 PTZ00424 helicase 45; Provisio 99.9 2.6E-21 5.7E-26 232.2 29.6 317 755-1200 50-374 (401)
45 TIGR01389 recQ ATP-dependent D 99.9 3.8E-21 8.2E-26 242.3 31.2 303 755-1192 13-325 (591)
46 PRK11057 ATP-dependent DNA hel 99.9 4.7E-21 1E-25 241.6 31.1 303 755-1192 25-337 (607)
47 KOG0330 ATP-dependent RNA heli 99.9 6.9E-21 1.5E-25 215.8 22.0 324 755-1210 83-415 (476)
48 KOG1123 RNA polymerase II tran 99.9 2.5E-21 5.4E-26 223.3 18.4 338 754-1205 301-658 (776)
49 TIGR03817 DECH_helic helicase/ 99.9 8.3E-20 1.8E-24 234.0 33.9 335 755-1209 36-395 (742)
50 PLN03137 ATP-dependent DNA hel 99.9 3.9E-20 8.5E-25 236.5 28.5 311 754-1195 459-784 (1195)
51 COG0513 SrmB Superfamily II DN 99.9 1.4E-19 3.1E-24 223.6 30.6 331 755-1213 51-392 (513)
52 PRK13767 ATP-dependent helicas 99.9 1.2E-19 2.6E-24 236.6 31.4 326 754-1195 31-395 (876)
53 COG1197 Mfd Transcription-repa 99.8 6.1E-19 1.3E-23 224.4 31.0 362 755-1255 594-966 (1139)
54 PRK11448 hsdR type I restricti 99.8 1.9E-18 4E-23 227.6 32.3 358 754-1197 412-815 (1123)
55 KOG0345 ATP-dependent RNA heli 99.8 8.6E-18 1.9E-22 194.6 26.7 316 755-1196 28-362 (567)
56 KOG0350 DEAD-box ATP-dependent 99.8 2.1E-18 4.5E-23 200.6 21.0 373 755-1214 159-552 (620)
57 TIGR01587 cas3_core CRISPR-ass 99.8 2E-17 4.4E-22 196.0 28.3 323 777-1214 2-355 (358)
58 PRK02362 ski2-like helicase; P 99.8 1.9E-17 4.1E-22 213.6 30.1 319 755-1199 23-396 (737)
59 PRK01172 ski2-like helicase; P 99.8 6.6E-17 1.4E-21 206.9 33.7 304 754-1190 21-368 (674)
60 TIGR02621 cas3_GSU0051 CRISPR- 99.8 2.4E-17 5.2E-22 208.8 27.8 313 752-1196 12-390 (844)
61 KOG0328 Predicted ATP-dependen 99.8 8E-18 1.7E-22 184.1 18.5 313 758-1201 52-374 (400)
62 PRK00254 ski2-like helicase; P 99.8 4.5E-16 9.6E-21 200.5 33.1 319 755-1201 23-389 (720)
63 KOG0335 ATP-dependent RNA heli 99.7 2.2E-17 4.7E-22 195.7 16.8 313 754-1195 95-441 (482)
64 TIGR03714 secA2 accessory Sec 99.7 3E-16 6.5E-21 197.2 25.4 128 1069-1208 406-542 (762)
65 TIGR00348 hsdR type I site-spe 99.7 1.8E-15 3.9E-20 192.6 32.3 370 755-1198 238-649 (667)
66 PRK09200 preprotein translocas 99.7 1.3E-15 2.8E-20 193.2 29.7 131 1068-1209 409-547 (790)
67 KOG0340 ATP-dependent RNA heli 99.7 4.8E-16 1E-20 175.1 22.8 334 754-1214 28-377 (442)
68 KOG0333 U5 snRNP-like RNA heli 99.7 5.9E-16 1.3E-20 181.1 23.3 354 739-1200 254-624 (673)
69 KOG0342 ATP-dependent RNA heli 99.7 2.1E-16 4.6E-21 184.5 19.6 329 755-1211 104-446 (543)
70 PHA02653 RNA helicase NPH-II; 99.7 1.5E-15 3.2E-20 191.5 28.1 336 743-1202 148-516 (675)
71 PRK12898 secA preprotein trans 99.7 9.9E-16 2.1E-20 190.6 25.3 130 1069-1209 455-592 (656)
72 PRK05580 primosome assembly pr 99.7 6.7E-15 1.5E-19 187.6 33.1 321 754-1196 143-547 (679)
73 KOG0341 DEAD-box protein abstr 99.7 2E-16 4.3E-21 178.7 16.5 323 755-1208 192-536 (610)
74 TIGR00963 secA preprotein tran 99.7 6.6E-17 1.4E-21 201.9 13.7 118 1069-1192 387-511 (745)
75 KOG0343 RNA Helicase [RNA proc 99.7 1.5E-15 3.3E-20 178.2 23.7 329 755-1214 91-435 (758)
76 KOG0348 ATP-dependent RNA heli 99.7 3.4E-15 7.4E-20 175.0 26.0 369 756-1214 160-566 (708)
77 COG0514 RecQ Superfamily II DN 99.7 2.2E-15 4.7E-20 184.5 24.1 308 755-1200 17-337 (590)
78 KOG0338 ATP-dependent RNA heli 99.7 7.1E-16 1.5E-20 179.7 17.5 324 755-1208 203-539 (691)
79 PRK09751 putative ATP-dependen 99.7 6.4E-15 1.4E-19 196.3 28.2 99 1085-1185 242-371 (1490)
80 COG1201 Lhr Lhr-like helicases 99.7 7.9E-15 1.7E-19 185.3 27.2 337 754-1218 21-378 (814)
81 KOG4284 DEAD box protein [Tran 99.7 1.6E-15 3.4E-20 180.1 18.3 313 756-1190 48-371 (980)
82 TIGR03158 cas3_cyano CRISPR-as 99.7 2.9E-14 6.3E-19 169.5 29.3 87 1086-1183 271-357 (357)
83 COG1205 Distinct helicase fami 99.6 1.3E-14 2.8E-19 187.5 26.6 334 755-1209 70-431 (851)
84 PRK09401 reverse gyrase; Revie 99.6 6.3E-15 1.4E-19 195.6 23.5 291 753-1185 78-431 (1176)
85 TIGR00595 priA primosomal prot 99.6 2.9E-14 6.2E-19 176.2 27.2 94 1100-1195 271-378 (505)
86 KOG0336 ATP-dependent RNA heli 99.6 3.8E-15 8.2E-20 169.5 16.4 316 755-1200 242-572 (629)
87 KOG0339 ATP-dependent RNA heli 99.6 2.7E-14 5.9E-19 166.3 21.5 321 755-1203 245-578 (731)
88 cd00079 HELICc Helicase superf 99.6 2.7E-15 6E-20 150.5 11.8 120 1071-1194 12-131 (131)
89 COG1204 Superfamily II helicas 99.6 3.9E-14 8.5E-19 180.9 21.8 310 755-1187 31-395 (766)
90 COG4098 comFA Superfamily II D 99.6 1.8E-12 3.9E-17 146.3 32.0 309 752-1195 94-413 (441)
91 TIGR01054 rgy reverse gyrase. 99.6 4.6E-14 1E-18 187.7 23.0 280 753-1169 76-408 (1171)
92 KOG0332 ATP-dependent RNA heli 99.6 8.8E-14 1.9E-18 157.8 21.5 316 757-1200 114-443 (477)
93 KOG0326 ATP-dependent RNA heli 99.6 4.2E-15 9.1E-20 165.2 9.7 311 757-1199 109-428 (459)
94 TIGR01970 DEAH_box_HrpB ATP-de 99.6 1.5E-13 3.1E-18 177.3 25.3 111 1086-1201 208-337 (819)
95 PRK13104 secA preprotein trans 99.6 2.1E-13 4.6E-18 172.9 25.1 391 753-1194 80-583 (896)
96 PF04851 ResIII: Type III rest 99.6 6E-15 1.3E-19 156.5 9.1 164 755-928 3-183 (184)
97 COG4096 HsdR Type I site-speci 99.5 3.7E-13 8E-18 166.3 21.6 357 753-1198 163-546 (875)
98 PRK14701 reverse gyrase; Provi 99.5 9.7E-13 2.1E-17 178.5 26.4 133 753-903 77-214 (1638)
99 PRK11664 ATP-dependent RNA hel 99.5 8.5E-13 1.8E-17 170.5 24.7 112 1086-1202 211-341 (812)
100 PRK12904 preprotein translocas 99.5 1.2E-12 2.6E-17 166.0 24.8 387 752-1194 78-569 (830)
101 KOG0344 ATP-dependent RNA heli 99.5 6.4E-13 1.4E-17 159.0 20.0 318 755-1199 158-494 (593)
102 PRK12906 secA preprotein trans 99.5 9.3E-13 2E-17 166.5 21.7 118 1069-1192 422-547 (796)
103 KOG0334 RNA helicase [RNA proc 99.5 1.8E-12 3.9E-17 163.5 24.0 317 755-1199 387-719 (997)
104 PRK09694 helicase Cas3; Provis 99.5 3.8E-12 8.3E-17 164.5 27.1 342 753-1188 284-665 (878)
105 KOG0347 RNA helicase [RNA proc 99.5 1.3E-12 2.9E-17 154.0 19.8 152 1087-1244 463-638 (731)
106 PRK13107 preprotein translocas 99.5 2.6E-12 5.7E-17 162.7 23.2 119 1069-1193 431-586 (908)
107 KOG0346 RNA helicase [RNA proc 99.5 2E-12 4.4E-17 149.4 19.5 308 759-1194 45-406 (569)
108 COG1202 Superfamily II helicas 99.5 2.1E-12 4.5E-17 152.8 19.4 313 755-1200 216-553 (830)
109 smart00487 DEXDc DEAD-like hel 99.4 6.5E-13 1.4E-17 140.9 12.9 158 753-930 6-173 (201)
110 TIGR00631 uvrb excinuclease AB 99.4 2.3E-11 5E-16 154.2 29.0 134 1069-1209 424-564 (655)
111 COG4889 Predicted helicase [Ge 99.4 4E-12 8.6E-17 155.0 19.1 380 753-1190 159-577 (1518)
112 PF00271 Helicase_C: Helicase 99.4 3.4E-13 7.3E-18 124.9 7.7 77 1106-1186 2-78 (78)
113 cd00046 DEXDc DEAD-like helica 99.4 4E-12 8.8E-17 127.0 13.4 137 775-927 1-144 (144)
114 KOG0327 Translation initiation 99.4 5.1E-12 1.1E-16 145.1 15.7 310 759-1200 52-370 (397)
115 PRK05298 excinuclease ABC subu 99.4 4.2E-10 9.1E-15 143.5 33.0 123 1070-1199 429-556 (652)
116 PRK11131 ATP-dependent RNA hel 99.3 1E-10 2.2E-15 154.4 24.1 111 1086-1203 285-414 (1294)
117 KOG0351 ATP-dependent DNA heli 99.3 7.5E-11 1.6E-15 152.4 22.3 310 755-1195 264-589 (941)
118 TIGR01967 DEAH_box_HrpA ATP-de 99.3 1.7E-10 3.8E-15 152.7 25.9 111 1086-1203 278-407 (1283)
119 smart00490 HELICc helicase sup 99.3 8.5E-12 1.8E-16 114.8 8.9 81 1102-1186 2-82 (82)
120 PRK12899 secA preprotein trans 99.3 6.1E-10 1.3E-14 141.7 26.5 119 1069-1194 550-677 (970)
121 PF11496 HDA2-3: Class II hist 99.3 6.8E-11 1.5E-15 136.6 15.9 218 993-1213 4-258 (297)
122 PRK12900 secA preprotein trans 99.3 6.4E-10 1.4E-14 141.9 25.5 117 1069-1191 580-704 (1025)
123 COG1203 CRISPR-associated heli 99.2 3.7E-10 8.1E-15 145.8 23.4 356 754-1215 194-567 (733)
124 KOG0952 DNA/RNA helicase MER3/ 99.2 8.1E-10 1.8E-14 138.8 24.3 312 770-1204 122-495 (1230)
125 cd00268 DEADc DEAD-box helicas 99.2 2.7E-10 5.9E-15 124.2 16.0 155 755-928 21-185 (203)
126 PRK12326 preprotein translocas 99.2 2.2E-09 4.7E-14 134.0 24.5 413 752-1209 75-553 (764)
127 PF00270 DEAD: DEAD/DEAH box h 99.2 2.3E-10 5E-15 120.4 13.6 156 757-933 1-167 (169)
128 KOG0337 ATP-dependent RNA heli 99.2 9.1E-11 2E-15 135.5 11.3 316 755-1201 43-369 (529)
129 KOG0353 ATP-dependent DNA heli 99.1 2.4E-09 5.2E-14 121.5 18.5 312 755-1196 94-465 (695)
130 PRK13103 secA preprotein trans 99.1 6.8E-09 1.5E-13 132.3 21.9 121 1068-1194 430-587 (913)
131 TIGR01407 dinG_rel DnaQ family 99.0 4.9E-09 1.1E-13 137.9 20.5 86 752-840 242-333 (850)
132 KOG0352 ATP-dependent DNA heli 99.0 1.7E-08 3.7E-13 116.7 22.0 318 757-1195 22-359 (641)
133 KOG0951 RNA helicase BRR2, DEA 99.0 6.4E-09 1.4E-13 132.2 19.7 71 1113-1186 607-688 (1674)
134 KOG0329 ATP-dependent RNA heli 99.0 5E-09 1.1E-13 114.4 15.8 124 757-901 66-197 (387)
135 COG0556 UvrB Helicase subunit 99.0 2.5E-07 5.5E-12 110.4 31.0 195 1071-1273 430-635 (663)
136 COG1198 PriA Primosomal protei 99.0 3.5E-08 7.6E-13 125.1 25.3 369 755-1199 198-604 (730)
137 PRK12903 secA preprotein trans 98.9 7.1E-08 1.5E-12 122.1 24.1 120 1069-1194 408-535 (925)
138 TIGR00596 rad1 DNA repair prot 98.8 2.1E-07 4.6E-12 120.2 21.5 153 1068-1223 267-539 (814)
139 KOG0957 PHD finger protein [Ge 98.8 1.2E-08 2.6E-13 118.9 9.1 148 76-303 545-701 (707)
140 PF13872 AAA_34: P-loop contai 98.8 6.9E-08 1.5E-12 110.5 15.1 239 746-1011 27-302 (303)
141 COG5034 TNG2 Chromatin remodel 98.8 5.8E-09 1.2E-13 114.0 5.7 48 72-122 218-270 (271)
142 KOG1513 Nuclear helicase MOP-3 98.8 6.5E-07 1.4E-11 109.8 23.6 248 745-1015 255-540 (1300)
143 COG1110 Reverse gyrase [DNA re 98.7 8.7E-07 1.9E-11 112.4 23.7 324 752-1169 79-416 (1187)
144 KOG1244 Predicted transcriptio 98.7 3.4E-09 7.4E-14 115.9 2.2 48 75-122 281-331 (336)
145 KOG0947 Cytoplasmic exosomal R 98.7 1E-06 2.2E-11 110.6 21.1 142 753-927 295-444 (1248)
146 COG4581 Superfamily II RNA hel 98.7 7E-07 1.5E-11 115.9 19.7 157 752-959 116-282 (1041)
147 CHL00122 secA preprotein trans 98.6 2.1E-06 4.5E-11 109.7 22.7 84 1069-1157 406-490 (870)
148 COG0610 Type I site-specific r 98.6 4.4E-06 9.5E-11 110.8 24.8 140 773-931 272-417 (962)
149 PRK08074 bifunctional ATP-depe 98.6 2.8E-05 6E-10 103.7 32.4 89 751-841 253-347 (928)
150 PRK07246 bifunctional ATP-depe 98.6 2.7E-06 5.8E-11 111.4 22.2 85 750-839 240-329 (820)
151 KOG4299 PHD Zn-finger protein 98.5 2E-08 4.3E-13 121.8 1.5 50 75-124 253-307 (613)
152 TIGR00604 rad3 DNA repair heli 98.5 9E-06 2E-10 105.5 23.6 72 755-826 10-82 (705)
153 KOG1973 Chromatin remodeling p 98.5 1.2E-07 2.7E-12 108.9 4.6 48 72-122 218-268 (274)
154 PRK12902 secA preprotein trans 98.4 9.7E-06 2.1E-10 103.7 21.5 84 1069-1157 421-505 (939)
155 PRK12901 secA preprotein trans 98.4 1.2E-05 2.5E-10 103.9 21.3 119 1069-1193 610-736 (1112)
156 COG1199 DinG Rad3-related DNA 98.4 2.1E-05 4.6E-10 101.4 24.0 105 1084-1193 476-612 (654)
157 PF00628 PHD: PHD-finger; Int 98.4 7.5E-08 1.6E-12 82.6 1.0 46 77-122 1-51 (51)
158 KOG0825 PHD Zn-finger protein 98.4 1.3E-07 2.9E-12 115.1 2.2 46 77-122 217-266 (1134)
159 cd04718 BAH_plant_2 BAH, or Br 98.3 2.8E-07 6.1E-12 95.1 3.0 47 96-142 1-47 (148)
160 KOG0922 DEAH-box RNA helicase 98.3 5.5E-05 1.2E-09 93.5 22.6 111 1089-1202 260-392 (674)
161 TIGR03117 cas_csf4 CRISPR-asso 98.3 0.00025 5.4E-09 90.1 28.1 80 760-840 2-87 (636)
162 KOG0949 Predicted helicase, DE 98.2 0.00023 5E-09 90.4 25.2 162 756-940 512-682 (1330)
163 KOG0920 ATP-dependent RNA heli 98.2 0.00013 2.9E-09 94.4 23.0 131 1071-1207 395-551 (924)
164 PRK15483 type III restriction- 98.2 2.3E-05 5E-10 101.9 15.8 144 775-928 60-239 (986)
165 PRK14873 primosome assembly pr 98.2 0.00026 5.7E-09 90.7 25.1 126 783-927 169-303 (665)
166 KOG0948 Nuclear exosomal RNA h 98.1 1.6E-05 3.5E-10 98.1 13.0 153 754-959 128-288 (1041)
167 KOG0349 Putative DEAD-box RNA 98.1 9.3E-06 2E-10 94.6 8.4 97 1087-1185 505-602 (725)
168 PRK11747 dinG ATP-dependent DN 98.0 0.00018 3.9E-09 93.2 20.4 92 1074-1170 521-616 (697)
169 KOG0924 mRNA splicing factor A 98.0 0.00017 3.6E-09 88.5 18.5 93 1113-1208 597-705 (1042)
170 COG1643 HrpA HrpA-like helicas 98.0 0.00023 4.9E-09 92.5 21.0 111 1087-1203 259-390 (845)
171 KOG0950 DNA polymerase theta/e 98.0 0.00031 6.7E-09 89.8 21.4 171 755-949 223-408 (1008)
172 smart00249 PHD PHD zinc finger 98.0 4E-06 8.7E-11 69.6 3.3 43 77-119 1-47 (47)
173 KOG1512 PHD Zn-finger protein 98.0 2.2E-06 4.8E-11 94.7 2.0 46 75-122 314-363 (381)
174 PF00385 Chromo: Chromo (CHRro 98.0 1.2E-06 2.7E-11 76.3 -0.3 51 663-714 2-54 (55)
175 PF13871 Helicase_C_4: Helicas 97.9 2E-05 4.3E-10 90.3 8.1 92 1130-1223 52-151 (278)
176 PF07652 Flavi_DEAD: Flaviviru 97.9 6.6E-05 1.4E-09 77.9 10.3 131 772-928 2-137 (148)
177 PF02399 Herpes_ori_bp: Origin 97.8 0.00041 8.9E-09 88.5 17.4 113 1071-1195 267-385 (824)
178 PF06465 DUF1087: Domain of Un 97.8 1.4E-05 3E-10 71.7 3.1 24 1365-1388 18-41 (66)
179 smart00489 DEXDc3 DEAD-like he 97.8 0.00017 3.6E-09 84.1 12.5 73 755-827 8-84 (289)
180 smart00488 DEXDc2 DEAD-like he 97.8 0.00017 3.6E-09 84.1 12.5 73 755-827 8-84 (289)
181 TIGR02562 cas3_yersinia CRISPR 97.7 0.022 4.7E-07 75.1 31.6 396 756-1189 409-883 (1110)
182 KOG0383 Predicted helicase [Ge 97.7 9.6E-06 2.1E-10 102.2 1.0 50 71-120 43-92 (696)
183 KOG0923 mRNA splicing factor A 97.7 0.00091 2E-08 82.3 17.3 84 1113-1204 506-610 (902)
184 COG0653 SecA Preprotein transl 97.7 0.0035 7.6E-08 80.7 22.9 115 1068-1188 410-535 (822)
185 PF00385 Chromo: Chromo (CHRro 97.6 1.6E-05 3.5E-10 69.3 0.1 38 611-648 18-55 (55)
186 KOG1245 Chromatin remodeling c 97.5 1.7E-05 3.8E-10 107.2 -0.8 49 75-123 1108-1159(1404)
187 cd00024 CHROMO Chromatin organ 97.5 6E-05 1.3E-09 65.3 2.2 48 664-713 5-53 (55)
188 KOG0953 Mitochondrial RNA heli 97.5 0.00043 9.2E-09 83.9 9.9 101 1085-1189 356-465 (700)
189 KOG0925 mRNA splicing factor A 97.4 0.0035 7.5E-08 75.1 16.8 62 1141-1204 313-391 (699)
190 PF13086 AAA_11: AAA domain; P 97.4 0.00051 1.1E-08 75.7 8.6 68 755-826 1-75 (236)
191 KOG4443 Putative transcription 97.4 8E-05 1.7E-09 91.3 2.2 52 73-124 66-120 (694)
192 cd00024 CHROMO Chromatin organ 97.3 0.00019 4.1E-09 62.2 3.8 37 610-647 18-54 (55)
193 smart00298 CHROMO Chromatin or 97.1 0.0003 6.6E-09 60.8 2.5 48 664-713 4-51 (55)
194 smart00298 CHROMO Chromatin or 97.1 0.00077 1.7E-08 58.2 4.9 39 609-648 15-53 (55)
195 KOG4323 Polycomb-like PHD Zn-f 97.0 0.00021 4.6E-09 86.0 1.1 48 77-124 170-226 (464)
196 KOG0926 DEAH-box RNA helicase 97.0 0.0088 1.9E-07 75.3 14.3 66 1132-1200 620-704 (1172)
197 KOG4150 Predicted ATP-dependen 96.9 0.0043 9.3E-08 75.1 10.5 135 1068-1206 506-646 (1034)
198 PF07517 SecA_DEAD: SecA DEAD- 96.8 0.013 2.9E-07 67.4 13.4 122 753-901 75-209 (266)
199 PF02562 PhoH: PhoH-like prote 96.8 0.0097 2.1E-07 66.0 11.7 149 756-933 5-161 (205)
200 KOG0955 PHD finger protein BR1 96.7 0.00086 1.9E-08 88.1 3.3 51 73-125 217-272 (1051)
201 COG3587 Restriction endonuclea 96.5 0.011 2.3E-07 75.4 10.7 133 775-927 75-242 (985)
202 PRK10536 hypothetical protein; 96.5 0.027 5.8E-07 64.4 13.0 152 756-932 60-217 (262)
203 KOG1473 Nucleosome remodeling 96.4 0.0014 3.1E-08 84.1 2.2 50 72-121 341-390 (1414)
204 KOG0954 PHD finger protein [Ge 96.3 0.0015 3.2E-08 81.1 1.3 47 74-122 270-321 (893)
205 COG5141 PHD zinc finger-contai 96.2 0.0022 4.8E-08 76.1 2.0 52 69-122 187-243 (669)
206 PF13604 AAA_30: AAA domain; P 96.0 0.06 1.3E-06 59.4 12.0 58 755-817 1-58 (196)
207 KOG0956 PHD finger protein AF1 96.0 0.0026 5.6E-08 78.3 1.3 42 78-121 8-56 (900)
208 PF09848 DUF2075: Uncharacteri 95.7 0.032 7E-07 66.9 9.2 46 777-823 4-49 (352)
209 PF13307 Helicase_C_2: Helicas 95.6 0.02 4.4E-07 61.4 6.3 102 1084-1191 6-143 (167)
210 KOG2748 Uncharacterized conser 95.6 0.0069 1.5E-07 70.0 2.6 35 611-647 25-59 (369)
211 PF13401 AAA_22: AAA domain; P 95.5 0.016 3.5E-07 58.5 4.7 116 773-927 3-125 (131)
212 cd00009 AAA The AAA+ (ATPases 95.4 0.13 2.7E-06 51.7 10.9 53 763-818 6-60 (151)
213 TIGR00376 DNA helicase, putati 95.2 0.094 2E-06 67.8 11.5 75 754-836 156-231 (637)
214 PF13831 PHD_2: PHD-finger; PD 94.8 0.0073 1.6E-07 48.5 -0.1 34 85-120 2-36 (36)
215 COG0553 HepA Superfamily II DN 94.7 0.043 9.3E-07 72.9 6.7 178 755-949 84-289 (866)
216 TIGR01448 recD_rel helicase, p 94.7 0.23 5.1E-06 65.1 13.1 135 753-930 321-455 (720)
217 KOG4299 PHD Zn-finger protein 94.6 0.043 9.4E-07 68.1 5.6 48 75-122 47-95 (613)
218 KOG1803 DNA helicase [Replicat 94.6 0.1 2.2E-06 64.9 8.6 63 755-823 185-248 (649)
219 PRK07003 DNA polymerase III su 93.9 0.38 8.3E-06 62.4 12.1 42 760-801 21-65 (830)
220 PRK04296 thymidine kinase; Pro 93.8 0.4 8.8E-06 52.6 10.7 34 777-813 5-38 (190)
221 PRK12323 DNA polymerase III su 93.5 0.54 1.2E-05 60.2 12.2 40 762-801 23-65 (700)
222 PLN03025 replication factor C 93.3 0.97 2.1E-05 53.6 13.5 40 760-799 18-59 (319)
223 TIGR01447 recD exodeoxyribonuc 93.2 0.57 1.2E-05 60.1 12.0 140 758-930 148-298 (586)
224 TIGR02881 spore_V_K stage V sp 93.2 0.33 7.1E-06 55.9 9.1 26 775-800 43-68 (261)
225 PRK14956 DNA polymerase III su 92.8 0.44 9.5E-06 59.3 9.8 42 760-801 23-67 (484)
226 KOG1132 Helicase of the DEAD s 92.8 0.47 1E-05 61.4 10.2 38 755-792 21-58 (945)
227 COG1875 NYN ribonuclease and A 92.7 0.59 1.3E-05 55.6 10.0 152 756-930 229-390 (436)
228 KOG2748 Uncharacterized conser 92.7 0.12 2.6E-06 60.1 4.4 54 661-718 10-63 (369)
229 PRK10875 recD exonuclease V su 92.6 0.98 2.1E-05 58.3 12.9 147 756-930 153-304 (615)
230 PRK09112 DNA polymerase III su 92.5 0.62 1.3E-05 56.2 10.4 42 760-801 28-72 (351)
231 PRK14949 DNA polymerase III su 92.3 0.7 1.5E-05 61.1 11.1 42 760-801 21-65 (944)
232 smart00382 AAA ATPases associa 92.2 0.38 8.2E-06 47.5 7.0 44 774-820 2-45 (148)
233 PRK07994 DNA polymerase III su 92.2 0.76 1.7E-05 59.3 11.2 42 760-801 21-65 (647)
234 PRK12723 flagellar biosynthesi 91.8 1.8 3.9E-05 52.9 13.3 133 775-945 175-315 (388)
235 PRK05707 DNA polymerase III su 91.4 0.83 1.8E-05 54.6 9.7 48 755-802 3-50 (328)
236 PRK14958 DNA polymerase III su 91.3 1.4 2.9E-05 55.9 11.9 42 760-801 21-65 (509)
237 PRK14960 DNA polymerase III su 91.1 1.9 4.1E-05 55.6 12.8 41 761-801 21-64 (702)
238 KOG1802 RNA helicase nonsense 91.1 0.58 1.3E-05 58.8 8.0 75 755-837 410-485 (935)
239 KOG1911 Heterochromatin-associ 90.9 0.18 4E-06 58.5 3.5 55 658-715 45-99 (270)
240 PRK14961 DNA polymerase III su 90.9 1.5 3.2E-05 53.2 11.4 41 760-800 21-64 (363)
241 PRK12402 replication factor C 90.7 1.2 2.6E-05 52.7 10.2 40 761-800 21-62 (337)
242 PRK14957 DNA polymerase III su 90.7 1.4 3E-05 56.0 11.2 42 760-801 21-65 (546)
243 PF12340 DUF3638: Protein of u 90.2 0.37 8E-06 54.4 5.0 74 752-828 20-93 (229)
244 PRK14951 DNA polymerase III su 89.8 1.2 2.5E-05 57.5 9.5 42 760-801 21-65 (618)
245 PRK06526 transposase; Provisio 89.7 1.4 3E-05 50.8 9.3 54 761-825 89-142 (254)
246 PF13177 DNA_pol3_delta2: DNA 89.6 2.5 5.5E-05 45.2 10.6 46 760-805 2-50 (162)
247 PRK14955 DNA polymerase III su 89.3 3.1 6.8E-05 51.0 12.5 42 760-801 21-65 (397)
248 KOG0951 RNA helicase BRR2, DEA 89.3 1.1 2.3E-05 60.1 8.6 131 771-927 1156-1298(1674)
249 TIGR02928 orc1/cdc6 family rep 89.2 3.3 7.2E-05 49.7 12.5 44 757-800 20-66 (365)
250 TIGR00595 priA primosomal prot 89.2 2.5 5.5E-05 53.5 11.8 96 1068-1167 6-101 (505)
251 PRK07940 DNA polymerase III su 89.1 2.1 4.5E-05 52.5 10.7 27 776-802 38-64 (394)
252 TIGR03420 DnaA_homol_Hda DnaA 89.1 1.6 3.5E-05 48.5 9.1 27 773-799 37-63 (226)
253 PRK07764 DNA polymerase III su 89.0 2.4 5.1E-05 56.6 11.8 25 777-801 40-64 (824)
254 PF05621 TniB: Bacterial TniB 88.8 3 6.5E-05 49.1 11.1 50 743-796 29-83 (302)
255 TIGR02880 cbbX_cfxQ probable R 88.7 0.69 1.5E-05 54.1 6.0 39 774-812 58-97 (284)
256 PRK14964 DNA polymerase III su 88.5 2.8 6.2E-05 52.7 11.4 42 760-801 18-62 (491)
257 PRK06871 DNA polymerase III su 88.4 3 6.5E-05 49.9 11.1 48 755-802 2-52 (325)
258 PRK07993 DNA polymerase III su 88.3 3.3 7.1E-05 49.7 11.5 49 755-803 2-53 (334)
259 KOG0957 PHD finger protein [Ge 88.3 0.42 9.2E-06 57.7 3.8 46 77-122 121-179 (707)
260 PRK14969 DNA polymerase III su 88.2 2.7 5.9E-05 53.5 11.2 42 760-801 21-65 (527)
261 PRK14952 DNA polymerase III su 88.1 3.3 7.2E-05 53.2 11.9 42 760-801 18-62 (584)
262 smart00492 HELICc3 helicase su 88.1 2.8 6.1E-05 44.0 9.4 47 1123-1170 31-79 (141)
263 CHL00181 cbbX CbbX; Provisiona 88.1 0.78 1.7E-05 53.8 5.9 39 774-812 59-98 (287)
264 PRK06645 DNA polymerase III su 88.0 2.3 5.1E-05 53.7 10.3 42 760-801 26-70 (507)
265 PRK08181 transposase; Validate 88.0 2.8 6E-05 48.8 10.2 45 756-800 88-132 (269)
266 KOG0991 Replication factor C, 87.8 15 0.00034 41.6 15.1 27 773-799 47-73 (333)
267 PRK05703 flhF flagellar biosyn 87.7 5.2 0.00011 49.6 12.9 56 889-944 299-359 (424)
268 PRK05563 DNA polymerase III su 87.6 6.2 0.00013 50.7 13.9 26 777-802 41-66 (559)
269 PRK09111 DNA polymerase III su 87.5 2.6 5.6E-05 54.4 10.5 43 760-802 29-74 (598)
270 PRK05580 primosome assembly pr 87.5 4.1 8.9E-05 53.5 12.5 96 1069-1168 172-267 (679)
271 PRK08058 DNA polymerase III su 87.4 2.5 5.5E-05 50.5 9.7 133 759-926 10-148 (329)
272 PRK08451 DNA polymerase III su 87.2 3 6.4E-05 53.0 10.5 42 760-801 19-63 (535)
273 TIGR03015 pepcterm_ATPase puta 87.2 3.4 7.3E-05 47.3 10.3 42 757-798 25-67 (269)
274 PRK14873 primosome assembly pr 87.1 2.7 5.8E-05 54.9 10.4 96 1069-1167 170-265 (665)
275 KOG1246 DNA-binding protein ju 86.8 0.76 1.7E-05 62.1 5.5 50 73-122 153-204 (904)
276 PRK07471 DNA polymerase III su 86.5 4.4 9.6E-05 49.2 11.2 43 760-802 24-69 (365)
277 PRK08769 DNA polymerase III su 86.4 5.3 0.00011 47.7 11.6 48 755-802 4-54 (319)
278 PRK08691 DNA polymerase III su 86.4 8.8 0.00019 50.1 14.2 42 760-801 21-65 (709)
279 PRK08116 hypothetical protein; 86.2 4.9 0.00011 46.7 11.0 36 774-812 114-149 (268)
280 PRK08084 DNA replication initi 86.1 2.7 5.9E-05 47.7 8.7 26 774-799 45-70 (235)
281 TIGR02768 TraA_Ti Ti-type conj 86.1 4.9 0.00011 53.3 12.2 59 753-817 350-408 (744)
282 PRK14962 DNA polymerase III su 85.9 3.8 8.2E-05 51.5 10.5 24 777-800 39-62 (472)
283 PRK14959 DNA polymerase III su 85.7 6.9 0.00015 50.6 12.7 39 763-801 24-65 (624)
284 PHA02544 44 clamp loader, smal 85.6 4.9 0.00011 47.3 10.9 40 889-928 100-141 (316)
285 PF05876 Terminase_GpA: Phage 85.6 3.2 6.9E-05 53.2 9.9 167 755-939 16-191 (557)
286 PRK14948 DNA polymerase III su 85.3 3.5 7.6E-05 53.5 10.1 42 760-801 21-65 (620)
287 COG1198 PriA Primosomal protei 85.3 3.1 6.8E-05 54.4 9.6 111 997-1150 195-305 (730)
288 PF06862 DUF1253: Protein of u 85.3 11 0.00023 47.0 13.6 127 1070-1199 280-414 (442)
289 KOG4443 Putative transcription 85.2 0.23 5E-06 62.1 -0.5 48 74-121 17-70 (694)
290 PRK06647 DNA polymerase III su 84.5 4.3 9.2E-05 52.1 10.2 25 777-801 41-65 (563)
291 COG3421 Uncharacterized protei 84.1 0.99 2.1E-05 56.4 4.1 36 781-818 4-40 (812)
292 PRK14953 DNA polymerase III su 84.1 6.7 0.00014 49.5 11.5 41 760-800 21-64 (486)
293 PRK00440 rfc replication facto 84.0 11 0.00023 44.3 12.7 40 760-799 22-63 (319)
294 PRK06964 DNA polymerase III su 83.9 6 0.00013 47.7 10.5 47 756-802 2-49 (342)
295 KOG0384 Chromodomain-helicase 83.8 0.9 2E-05 60.7 3.9 37 612-648 300-336 (1373)
296 PRK11889 flhF flagellar biosyn 83.8 8.2 0.00018 47.3 11.5 36 775-813 242-277 (436)
297 PF13173 AAA_14: AAA domain 83.6 4.7 0.0001 41.1 8.3 39 889-928 61-99 (128)
298 PF13245 AAA_19: Part of AAA d 83.6 3.2 7E-05 39.0 6.5 45 774-819 10-56 (76)
299 PHA03333 putative ATPase subun 83.5 9.5 0.00021 49.4 12.3 150 757-928 171-332 (752)
300 PRK04195 replication factor C 83.1 14 0.0003 46.6 13.9 43 756-798 18-63 (482)
301 PRK14965 DNA polymerase III su 82.9 7.2 0.00016 50.3 11.4 43 760-802 21-66 (576)
302 PRK14954 DNA polymerase III su 82.8 6.2 0.00013 51.1 10.7 42 760-801 21-65 (620)
303 PRK14974 cell division protein 82.6 9.2 0.0002 46.0 11.4 35 776-813 142-176 (336)
304 smart00491 HELICc2 helicase su 82.2 6.5 0.00014 41.4 8.8 52 1118-1170 24-80 (142)
305 PHA02533 17 large terminase pr 82.1 10 0.00022 48.4 12.2 56 754-814 58-113 (534)
306 PRK14963 DNA polymerase III su 82.1 8 0.00017 49.0 11.2 42 760-801 19-63 (504)
307 PRK05896 DNA polymerase III su 81.9 11 0.00024 48.5 12.3 43 760-802 21-66 (605)
308 PRK06835 DNA replication prote 81.8 14 0.0003 44.4 12.4 48 754-801 159-210 (329)
309 PRK14950 DNA polymerase III su 81.7 7.5 0.00016 50.2 11.0 41 760-800 21-64 (585)
310 KOG3612 PHD Zn-finger protein 81.7 1.3 2.8E-05 54.6 3.8 47 74-121 59-107 (588)
311 PRK13889 conjugal transfer rel 81.5 8.5 0.00019 52.3 11.6 60 753-818 344-403 (988)
312 KOG1805 DNA replication helica 81.1 5.7 0.00012 52.5 9.3 160 755-930 669-832 (1100)
313 PRK06090 DNA polymerase III su 81.1 10 0.00022 45.2 11.0 48 755-802 3-53 (319)
314 KOG0989 Replication factor C, 80.9 5 0.00011 47.1 7.9 42 759-800 40-83 (346)
315 COG0470 HolB ATPase involved i 80.9 7.9 0.00017 45.3 10.0 31 773-803 22-53 (325)
316 PF06733 DEAD_2: DEAD_2; Inte 80.7 1 2.2E-05 48.5 2.3 38 866-903 118-159 (174)
317 PRK06921 hypothetical protein; 80.5 12 0.00026 43.5 11.1 28 773-800 116-143 (266)
318 PF00448 SRP54: SRP54-type pro 80.2 4.8 0.0001 44.6 7.4 133 777-944 4-142 (196)
319 PF15446 zf-PHD-like: PHD/FYVE 80.1 1.2 2.6E-05 47.5 2.5 46 77-122 1-60 (175)
320 PHA03368 DNA packaging termina 79.8 39 0.00085 44.0 15.8 128 775-926 255-389 (738)
321 cd01121 Sms Sms (bacterial rad 79.7 9.6 0.00021 46.5 10.4 60 761-823 68-128 (372)
322 PRK08727 hypothetical protein; 79.2 13 0.00028 42.2 10.7 26 775-800 42-67 (233)
323 TIGR00678 holB DNA polymerase 79.2 8.5 0.00018 41.8 8.9 27 775-801 15-41 (188)
324 PF00580 UvrD-helicase: UvrD/R 78.2 4.1 8.9E-05 47.1 6.5 56 756-817 1-57 (315)
325 PRK08903 DnaA regulatory inact 77.9 13 0.00029 41.6 10.2 28 772-799 40-67 (227)
326 TIGR03345 VI_ClpV1 type VI sec 77.6 11 0.00024 50.8 10.9 40 760-799 192-233 (852)
327 PRK07133 DNA polymerase III su 77.3 14 0.0003 48.7 11.2 42 760-801 23-67 (725)
328 KOG2340 Uncharacterized conser 77.2 23 0.00051 44.3 12.3 108 1076-1186 540-652 (698)
329 KOG0921 Dosage compensation co 76.9 14 0.00031 48.6 10.7 123 1074-1199 628-773 (1282)
330 PRK13342 recombination factor 75.9 15 0.00033 45.3 10.7 23 775-797 37-59 (413)
331 KOG1911 Heterochromatin-associ 75.7 2.3 4.9E-05 49.5 3.3 38 612-650 64-101 (270)
332 PRK00149 dnaA chromosomal repl 75.7 16 0.00034 45.7 10.9 26 775-800 149-174 (450)
333 PRK10865 protein disaggregatio 75.7 11 0.00024 50.9 10.1 37 763-799 186-224 (857)
334 PRK14722 flhF flagellar biosyn 75.7 30 0.00065 42.3 12.8 43 772-815 135-177 (374)
335 PRK14087 dnaA chromosomal repl 75.5 15 0.00032 46.0 10.6 26 775-800 142-167 (450)
336 cd01120 RecA-like_NTPases RecA 75.0 24 0.00052 36.2 10.5 37 777-816 2-38 (165)
337 KOG1131 RNA polymerase II tran 74.6 8 0.00017 48.0 7.5 62 754-815 15-76 (755)
338 TIGR02397 dnaX_nterm DNA polym 74.3 19 0.00042 42.9 10.9 42 760-801 19-63 (355)
339 PRK09183 transposase/IS protei 74.2 10 0.00023 43.8 8.2 28 772-799 100-127 (259)
340 PRK06893 DNA replication initi 73.6 19 0.00041 40.7 10.0 25 776-800 41-65 (229)
341 PRK11823 DNA repair protein Ra 73.4 16 0.00035 45.6 10.2 63 761-826 66-129 (446)
342 PF00004 AAA: ATPase family as 73.3 5.1 0.00011 40.1 4.8 35 777-817 1-35 (132)
343 COG0593 DnaA ATPase involved i 73.2 22 0.00047 43.9 10.9 41 889-929 175-221 (408)
344 PRK08699 DNA polymerase III su 73.2 21 0.00046 42.8 10.7 47 756-802 2-49 (325)
345 PRK06305 DNA polymerase III su 73.1 18 0.00039 45.3 10.4 42 760-801 22-66 (451)
346 PRK05642 DNA replication initi 72.5 20 0.00044 40.7 9.9 37 890-926 98-138 (234)
347 PRK10917 ATP-dependent DNA hel 72.1 20 0.00043 47.2 11.1 98 1069-1168 292-392 (681)
348 PRK14088 dnaA chromosomal repl 72.0 25 0.00054 44.0 11.3 26 775-800 131-156 (440)
349 PRK00411 cdc6 cell division co 72.0 24 0.00052 42.8 11.1 45 757-801 35-82 (394)
350 PRK11054 helD DNA helicase IV; 71.9 7.5 0.00016 51.1 7.0 67 754-826 195-263 (684)
351 TIGR00643 recG ATP-dependent D 71.5 21 0.00045 46.7 10.9 98 1069-1168 266-366 (630)
352 PTZ00293 thymidine kinase; Pro 70.5 26 0.00056 39.5 9.9 36 777-815 7-42 (211)
353 KOG0956 PHD finger protein AF1 70.4 5.9 0.00013 50.2 5.2 50 71-120 113-178 (900)
354 PRK00080 ruvB Holliday junctio 70.4 47 0.001 39.6 12.8 42 757-798 30-75 (328)
355 TIGR00362 DnaA chromosomal rep 69.9 13 0.00029 45.6 8.3 26 776-801 138-163 (405)
356 TIGR02639 ClpA ATP-dependent C 69.7 20 0.00044 47.6 10.5 34 766-799 193-228 (731)
357 PRK14086 dnaA chromosomal repl 69.6 22 0.00048 46.0 10.3 37 890-926 378-418 (617)
358 PRK13826 Dtr system oriT relax 69.2 33 0.00071 47.4 12.2 59 753-817 379-437 (1102)
359 PRK12727 flagellar biosynthesi 69.1 55 0.0012 41.8 13.3 39 773-812 349-387 (559)
360 COG2256 MGS1 ATPase related to 68.8 19 0.00041 44.0 8.8 22 775-796 49-70 (436)
361 PF12861 zf-Apc11: Anaphase-pr 68.4 1.8 4E-05 41.5 0.3 43 78-122 35-80 (85)
362 PTZ00112 origin recognition co 68.2 32 0.00069 46.2 11.1 44 757-800 760-807 (1164)
363 PF05496 RuvB_N: Holliday junc 67.4 40 0.00086 38.5 10.5 22 775-796 51-72 (233)
364 PF00265 TK: Thymidine kinase; 67.4 29 0.00062 38.0 9.3 34 778-814 5-38 (176)
365 TIGR03346 chaperone_ClpB ATP-d 67.1 14 0.00031 49.9 8.3 40 760-799 178-219 (852)
366 PRK06731 flhF flagellar biosyn 67.0 53 0.0011 38.5 11.9 37 774-813 75-111 (270)
367 PRK05986 cob(I)alamin adenolsy 66.8 81 0.0017 35.1 12.6 138 773-935 21-165 (191)
368 PRK07399 DNA polymerase III su 66.5 32 0.00069 41.1 10.2 43 760-802 9-54 (314)
369 CHL00095 clpC Clp protease ATP 66.3 20 0.00044 48.2 9.5 27 773-799 199-225 (821)
370 KOG1473 Nucleosome remodeling 66.3 1.1 2.5E-05 59.0 -2.0 51 77-127 430-484 (1414)
371 COG1484 DnaC DNA replication p 65.9 15 0.00032 42.5 7.0 63 758-823 89-151 (254)
372 COG1435 Tdk Thymidine kinase [ 65.7 20 0.00044 39.8 7.6 34 890-926 83-118 (201)
373 KOG1512 PHD Zn-finger protein 65.5 3.1 6.8E-05 47.4 1.5 52 77-128 260-323 (381)
374 COG3267 ExeA Type II secretory 65.5 25 0.00055 40.6 8.5 51 763-817 39-90 (269)
375 PRK12422 chromosomal replicati 64.6 26 0.00057 43.8 9.4 26 775-800 142-167 (445)
376 COG1474 CDC6 Cdc6-related prot 64.5 93 0.002 38.1 13.8 47 755-801 20-69 (366)
377 PHA03372 DNA packaging termina 63.9 14 0.00031 47.2 6.8 108 772-903 201-313 (668)
378 PRK00771 signal recognition pa 63.8 30 0.00066 43.2 9.6 26 775-800 96-121 (437)
379 CHL00206 ycf2 Ycf2; Provisiona 63.6 16 0.00035 52.3 7.7 41 774-820 1630-1670(2281)
380 PRK14971 DNA polymerase III su 63.4 69 0.0015 41.8 13.1 41 760-800 22-65 (614)
381 KOG0737 AAA+-type ATPase [Post 62.8 5.6 0.00012 47.8 2.9 52 770-827 123-174 (386)
382 cd06533 Glyco_transf_WecG_TagA 62.6 49 0.0011 35.8 10.0 71 1074-1144 33-104 (171)
383 PF11793 FANCL_C: FANCL C-term 62.6 0.93 2E-05 42.0 -2.8 47 76-122 3-64 (70)
384 TIGR02640 gas_vesic_GvpN gas v 62.4 19 0.0004 41.7 7.1 50 757-812 4-53 (262)
385 PRK04132 replication factor C 61.9 39 0.00084 45.5 10.6 45 889-933 630-675 (846)
386 TIGR00696 wecB_tagA_cpsF bacte 61.9 57 0.0012 35.8 10.3 70 1074-1143 35-104 (177)
387 PLN00020 ribulose bisphosphate 61.1 27 0.00058 42.7 8.1 44 774-823 148-191 (413)
388 TIGR02688 conserved hypothetic 61.1 25 0.00054 43.6 8.0 39 759-797 194-232 (449)
389 cd01124 KaiC KaiC is a circadi 61.0 21 0.00045 38.3 6.8 48 777-827 2-49 (187)
390 PF14446 Prok-RING_1: Prokaryo 60.5 4.5 9.7E-05 35.7 1.2 28 77-104 7-38 (54)
391 PRK08533 flagellar accessory p 60.2 38 0.00083 38.4 9.0 52 772-826 22-73 (230)
392 cd00561 CobA_CobO_BtuR ATP:cor 60.1 74 0.0016 34.3 10.6 53 882-934 88-144 (159)
393 TIGR01242 26Sp45 26S proteasom 59.9 41 0.00088 40.8 9.7 25 774-798 156-180 (364)
394 PRK07952 DNA replication prote 59.5 31 0.00066 39.8 8.1 61 758-825 79-143 (244)
395 PF03808 Glyco_tran_WecB: Glyc 58.8 61 0.0013 35.1 9.9 70 1074-1143 35-105 (172)
396 COG1419 FlhF Flagellar GTP-bin 58.7 74 0.0016 39.2 11.3 132 774-945 203-341 (407)
397 cd01128 rho_factor Transcripti 58.5 31 0.00068 39.8 7.9 23 772-794 14-36 (249)
398 PRK12724 flagellar biosynthesi 58.3 64 0.0014 40.2 10.8 22 777-798 226-247 (432)
399 COG4626 Phage terminase-like p 57.8 70 0.0015 40.8 11.2 169 754-949 60-249 (546)
400 cd03115 SRP The signal recogni 57.4 1.5E+02 0.0033 31.5 12.6 24 777-800 3-26 (173)
401 TIGR00580 mfd transcription-re 57.0 57 0.0012 44.6 11.1 98 1069-1168 482-582 (926)
402 TIGR02974 phageshock_pspF psp 57.0 93 0.002 37.4 11.9 51 767-820 15-65 (329)
403 PRK13341 recombination factor 56.7 47 0.001 44.1 10.0 23 775-797 53-75 (725)
404 TIGR03689 pup_AAA proteasome A 56.6 30 0.00065 44.0 7.9 27 773-799 215-241 (512)
405 PRK06067 flagellar accessory p 56.5 43 0.00094 37.7 8.6 52 773-827 24-75 (234)
406 PRK11034 clpA ATP-dependent Cl 56.3 29 0.00063 46.2 8.1 27 773-799 206-232 (758)
407 PRK14712 conjugal transfer nic 55.7 59 0.0013 46.6 11.1 61 755-817 835-896 (1623)
408 PRK07276 DNA polymerase III su 55.6 75 0.0016 37.6 10.5 46 756-802 3-50 (290)
409 PRK05973 replicative DNA helic 55.6 27 0.00058 40.1 6.7 59 766-827 56-114 (237)
410 TIGR00708 cobA cob(I)alamin ad 55.4 19 0.00042 39.3 5.2 51 882-932 90-144 (173)
411 PRK05564 DNA polymerase III su 55.3 48 0.001 39.2 9.1 42 760-801 9-53 (313)
412 PRK13709 conjugal transfer nic 55.2 60 0.0013 47.0 11.2 63 754-818 966-1029(1747)
413 KOG4628 Predicted E3 ubiquitin 54.8 8 0.00017 46.3 2.4 44 76-122 230-276 (348)
414 CHL00176 ftsH cell division pr 54.6 78 0.0017 41.5 11.4 24 774-797 216-239 (638)
415 PF01695 IstB_IS21: IstB-like 54.3 10 0.00022 41.4 3.0 47 772-825 45-91 (178)
416 TIGR01074 rep ATP-dependent DN 54.1 17 0.00037 47.6 5.6 66 756-827 2-69 (664)
417 cd01122 GP4d_helicase GP4d_hel 53.1 46 0.001 38.2 8.3 60 764-825 20-79 (271)
418 PRK10923 glnG nitrogen regulat 52.9 2E+02 0.0043 35.9 14.5 47 771-820 158-204 (469)
419 PRK10689 transcription-repair 52.5 76 0.0016 44.4 11.4 95 1069-1165 631-728 (1147)
420 PRK10919 ATP-dependent DNA hel 51.9 19 0.00041 47.4 5.3 57 755-817 2-59 (672)
421 KOG0952 DNA/RNA helicase MER3/ 51.8 15 0.00033 49.1 4.4 110 774-904 943-1061(1230)
422 TIGR00602 rad24 checkpoint pro 51.0 53 0.0012 42.9 9.1 51 747-797 79-133 (637)
423 PRK03992 proteasome-activating 50.9 22 0.00047 43.7 5.4 38 774-817 165-202 (389)
424 PF01443 Viral_helicase1: Vira 50.6 27 0.00059 38.9 5.7 41 889-932 62-102 (234)
425 PRK14721 flhF flagellar biosyn 50.5 1.5E+02 0.0033 37.0 12.4 55 889-944 269-328 (420)
426 KOG0738 AAA+-type ATPase [Post 50.5 50 0.0011 40.3 7.9 47 775-827 246-292 (491)
427 PF03354 Terminase_1: Phage Te 50.2 62 0.0013 40.8 9.4 46 880-927 114-162 (477)
428 PF05970 PIF1: PIF1-like helic 49.8 33 0.00071 41.7 6.6 60 755-817 1-62 (364)
429 TIGR00416 sms DNA repair prote 49.6 47 0.001 41.7 8.1 63 761-826 80-143 (454)
430 TIGR01075 uvrD DNA helicase II 49.5 23 0.00051 46.9 5.8 67 755-827 4-72 (715)
431 KOG1133 Helicase of the DEAD s 48.9 13 0.00028 47.8 3.0 80 1089-1171 631-721 (821)
432 PF14061 Mtf2_C: Polycomb-like 48.9 7.3 0.00016 33.5 0.6 26 663-688 24-49 (50)
433 TIGR01243 CDC48 AAA family ATP 48.6 37 0.0008 45.2 7.4 35 773-813 211-245 (733)
434 TIGR00767 rho transcription te 48.4 76 0.0016 39.3 9.3 27 772-798 166-192 (415)
435 TIGR01243 CDC48 AAA family ATP 48.3 35 0.00075 45.4 7.1 41 774-820 487-527 (733)
436 TIGR02012 tigrfam_recA protein 47.8 80 0.0017 37.9 9.2 54 763-819 42-97 (321)
437 PRK11361 acetoacetate metaboli 47.8 2.4E+02 0.0053 34.9 14.0 55 763-820 155-209 (457)
438 PRK08760 replicative DNA helic 47.6 41 0.0009 42.5 7.2 66 761-828 216-281 (476)
439 PRK10416 signal recognition pa 47.1 1.5E+02 0.0032 35.6 11.4 34 776-812 116-149 (318)
440 PRK14970 DNA polymerase III su 46.8 1.6E+02 0.0034 35.7 11.9 40 760-799 22-64 (367)
441 PF00308 Bac_DnaA: Bacterial d 46.6 1.8E+02 0.0039 32.8 11.5 37 889-925 97-137 (219)
442 PF15446 zf-PHD-like: PHD/FYVE 46.5 27 0.00058 37.8 4.4 20 87-106 124-143 (175)
443 COG0552 FtsY Signal recognitio 46.3 1.1E+02 0.0024 36.8 9.9 124 778-934 143-276 (340)
444 PRK09376 rho transcription ter 46.3 38 0.00082 41.7 6.2 28 772-799 167-194 (416)
445 PTZ00454 26S protease regulato 45.6 28 0.00061 42.9 5.2 38 773-816 178-215 (398)
446 TIGR01425 SRP54_euk signal rec 45.6 2.2E+02 0.0049 35.6 12.9 34 777-813 103-136 (429)
447 COG2812 DnaX DNA polymerase II 45.5 42 0.00092 42.6 6.8 43 760-802 21-66 (515)
448 PF12846 AAA_10: AAA-like doma 45.5 58 0.0013 37.3 7.6 47 774-823 1-47 (304)
449 TIGR02760 TraI_TIGR conjugativ 45.4 1E+02 0.0022 45.7 11.3 62 754-817 1018-1080(1960)
450 COG3973 Superfamily I DNA and 45.2 34 0.00073 43.8 5.7 50 772-821 224-276 (747)
451 COG2255 RuvB Holliday junction 45.1 49 0.0011 38.9 6.6 24 775-798 53-76 (332)
452 KOG1081 Transcription factor N 45.0 16 0.00034 45.9 2.9 47 73-122 87-133 (463)
453 PRK13766 Hef nuclease; Provisi 45.0 5.3E+02 0.011 34.6 17.4 95 1069-1169 39-141 (773)
454 PF13639 zf-RING_2: Ring finge 44.8 2.7 5.8E-05 34.9 -2.6 39 77-120 2-44 (44)
455 PRK13833 conjugal transfer pro 44.7 51 0.0011 39.6 7.0 45 752-799 125-169 (323)
456 TIGR02760 TraI_TIGR conjugativ 44.4 1.7E+02 0.0037 43.4 13.3 62 752-818 426-487 (1960)
457 KOG2543 Origin recognition com 44.3 4.9E+02 0.011 32.2 14.7 144 755-930 9-161 (438)
458 PRK05728 DNA polymerase III su 44.0 42 0.0009 35.4 5.5 41 1069-1109 11-51 (142)
459 PF06745 KaiC: KaiC; InterPro 43.5 51 0.0011 36.8 6.6 54 773-828 18-71 (226)
460 COG0467 RAD55 RecA-superfamily 43.5 57 0.0012 37.5 7.0 53 772-827 21-73 (260)
461 KOG1133 Helicase of the DEAD s 43.1 39 0.00085 43.7 5.8 45 754-798 14-58 (821)
462 KOG1632 Uncharacterized PHD Zn 42.9 18 0.00039 43.7 2.9 48 81-128 69-119 (345)
463 PRK12726 flagellar biosynthesi 42.8 1.2E+02 0.0026 37.4 9.7 46 774-822 206-255 (407)
464 TIGR00064 ftsY signal recognit 42.8 2.1E+02 0.0046 33.5 11.6 49 777-828 75-123 (272)
465 PF13771 zf-HC5HC2H: PHD-like 42.7 12 0.00027 35.7 1.3 29 76-104 37-68 (90)
466 TIGR03881 KaiC_arch_4 KaiC dom 42.6 68 0.0015 35.9 7.4 58 763-823 8-66 (229)
467 TIGR03877 thermo_KaiC_1 KaiC d 42.4 64 0.0014 36.7 7.1 62 762-826 8-70 (237)
468 COG0464 SpoVK ATPases of the A 42.3 32 0.00069 43.4 5.2 65 756-826 250-322 (494)
469 PF13481 AAA_25: AAA domain; P 42.3 29 0.00063 37.5 4.2 64 765-828 22-93 (193)
470 PF13832 zf-HC5HC2H_2: PHD-zin 42.1 14 0.0003 36.9 1.5 31 74-104 54-87 (110)
471 PRK06995 flhF flagellar biosyn 42.0 1.3E+02 0.0029 38.1 10.3 26 776-801 258-283 (484)
472 COG1066 Sms Predicted ATP-depe 41.5 1E+02 0.0022 38.1 8.7 89 776-904 95-183 (456)
473 PRK06646 DNA polymerase III su 41.4 48 0.001 35.6 5.5 42 1068-1109 10-51 (154)
474 PRK11773 uvrD DNA-dependent he 41.3 35 0.00076 45.3 5.5 57 755-817 9-66 (721)
475 KOG0740 AAA+-type ATPase [Post 40.7 24 0.00053 43.6 3.6 46 775-826 187-232 (428)
476 COG0541 Ffh Signal recognition 40.7 1.1E+02 0.0024 38.0 9.0 58 777-837 103-160 (451)
477 TIGR02915 PEP_resp_reg putativ 40.6 4.4E+02 0.0094 32.6 14.6 46 772-820 160-205 (445)
478 PRK10263 DNA translocase FtsK; 40.3 69 0.0015 44.7 7.9 43 773-815 1009-1052(1355)
479 COG2842 Uncharacterized ATPase 40.3 59 0.0013 38.4 6.4 54 764-825 84-137 (297)
480 TIGR02655 circ_KaiC circadian 39.6 77 0.0017 40.1 7.9 64 762-828 250-314 (484)
481 COG0003 ArsA Predicted ATPase 39.5 59 0.0013 39.0 6.4 61 781-844 9-76 (322)
482 KOG0827 Predicted E3 ubiquitin 39.5 6.8 0.00015 46.8 -1.3 14 92-105 25-38 (465)
483 TIGR01241 FtsH_fam ATP-depende 39.3 54 0.0012 41.5 6.5 24 774-797 88-111 (495)
484 PRK13894 conjugal transfer ATP 39.2 70 0.0015 38.3 7.0 43 753-798 130-172 (319)
485 KOG0739 AAA+-type ATPase [Post 39.0 74 0.0016 37.6 6.8 48 775-828 167-214 (439)
486 cd01129 PulE-GspE PulE/GspE Th 38.5 50 0.0011 38.4 5.6 41 756-798 64-104 (264)
487 cd00983 recA RecA is a bacter 38.4 1.2E+02 0.0026 36.5 8.8 53 763-818 42-96 (325)
488 TIGR01547 phage_term_2 phage t 38.4 1.2E+02 0.0026 37.1 9.1 50 777-826 4-55 (396)
489 PF06068 TIP49: TIP49 C-termin 37.9 44 0.00096 40.7 5.0 52 760-815 32-87 (398)
490 COG1200 RecG RecG-like helicas 37.6 1.8E+02 0.004 38.0 10.6 95 1069-1167 293-392 (677)
491 PF00437 T2SE: Type II/IV secr 37.6 47 0.001 38.3 5.2 35 765-799 118-152 (270)
492 KOG1807 Helicases [Replication 37.5 40 0.00087 44.0 4.8 81 755-841 378-462 (1025)
493 TIGR00959 ffh signal recogniti 37.3 2.4E+02 0.0053 35.3 11.5 24 776-799 101-124 (428)
494 TIGR03880 KaiC_arch_3 KaiC dom 37.0 90 0.0019 34.9 7.2 52 773-827 15-66 (224)
495 TIGR02785 addA_Gpos recombinat 37.0 62 0.0013 45.8 7.0 62 756-823 2-63 (1232)
496 COG2109 BtuR ATP:corrinoid ade 36.9 2.2E+02 0.0047 31.9 9.6 61 882-942 115-179 (198)
497 cd00268 DEADc DEAD-box helicas 36.7 5.5E+02 0.012 27.7 13.2 95 1069-1169 46-153 (203)
498 PRK13900 type IV secretion sys 36.5 68 0.0015 38.6 6.4 35 764-798 150-184 (332)
499 PF13901 DUF4206: Domain of un 36.4 24 0.00052 39.4 2.4 38 76-122 153-198 (202)
500 TIGR00682 lpxK tetraacyldisacc 36.2 1.2E+02 0.0027 36.2 8.4 19 783-801 39-57 (311)
No 1
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=100.00 E-value=1.1e-144 Score=1331.85 Aligned_cols=619 Identities=47% Similarity=0.757 Sum_probs=559.4
Q ss_pred ceeEEEEEEecCccccccccCCHHHHH---HHHHHHHHHHHHhhCc-------ccccchhhhccchhhhhhhccCCCCcc
Q 042857 609 AVSYEFLVKWVGKSNIHNSWIPESQLK---VLAKRKLENYKAKYGT-------TVINICDERWKQPQRVISLRSSKDGTR 678 (1404)
Q Consensus 609 ~~~~eylVKw~~~Sy~h~~Wv~e~~l~---~~~~~~l~~~~~k~~~-------~~~~~~~~e~~~~eRii~~r~~~~~~~ 678 (1404)
....+|||||+|+||+||+|.++++|. ..+-+++.||+++... .....+.++|.+|+|||++....+ .
T Consensus 223 ~e~~qFlIKWkg~SyLHctWet~~~L~~~~~rG~kKv~nf~kK~~e~~~~~r~E~~~~~~~dy~~VdRIia~~~~~d--~ 300 (1373)
T KOG0384|consen 223 EEEEQFLIKWKGWSYLHCTWETESELLEMNVRGLKKVDNFKKKVIEEDRWRRQEREEDLNKDYVIVDRIIAEQTSKD--P 300 (1373)
T ss_pred chhhhhheeeccccceeccccchHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcccCCC--c
Confidence 556899999999999999999999976 3466789999887422 122345678999999999988766 8
Q ss_pred eeeeccCCCCCCcccccCCCchHHHhhHHHHHHHHHHHHhhhccccCCCCCCCCCCCCcchhhhhhccCCccCCCCCCCH
Q 042857 679 EAFVKWTGLPYDECTWEKLDEPALEKYSHLTDLFVQFERQTLKKDASEDELPRGKGDCQQSEIVALTEQPEELKGGALFP 758 (1404)
Q Consensus 679 eylVKW~gL~Y~~~TWE~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~qP~~l~g~~L~p 758 (1404)
+|||||+||||++||||.... +....+..++.|...+.... .+..........+.|.++..||.++.|.+||+
T Consensus 301 eYLvKW~~LpY~e~TWE~~~~-I~~~~~~~~~~~~~Re~sk~------~p~~~~~~~~~rp~~~Kle~qp~~~~g~~LRd 373 (1373)
T KOG0384|consen 301 EYLVKWRGLPYEECTWEDAED-IAKKAQEEIEEFQSRENSKT------LPNKGCKYRPQRPRFRKLEKQPEYKGGNELRD 373 (1373)
T ss_pred eeEEEecCCCcccccccchhh-hhhhHHHHHHHHhhhhcccc------CCCCccccCccchhHHHhhcCccccccchhhh
Confidence 999999999999999996432 23445666777766543221 11111112234567889999999999999999
Q ss_pred HHHHHHHHHHHhhccCCcEEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEeCCCChHHHHHHHHHHCCCCcEEEEec
Q 042857 759 HQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLSTMPNWLAEFALWAPNLNVVEYHG 838 (1404)
Q Consensus 759 yQlegVnwL~~~~~~~~~~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP~Sll~nW~rEf~kw~P~l~Vvvy~G 838 (1404)
||++|||||+++|+++.+||||||||||||+|+|+||.+|+..+...||||||||+|++.+|++||..|+ ++++++|+|
T Consensus 374 yQLeGlNWl~~~W~~~~n~ILADEmgLgktvqti~fl~~l~~~~~~~gpflvvvplst~~~W~~ef~~w~-~mn~i~y~g 452 (1373)
T KOG0384|consen 374 YQLEGLNWLLYSWYKRNNCILADEMGLGKTVQTITFLSYLFHSLQIHGPFLVVVPLSTITAWEREFETWT-DMNVIVYHG 452 (1373)
T ss_pred hhcccchhHHHHHHhcccceehhhcCCCcchHHHHHHHHHHHhhhccCCeEEEeehhhhHHHHHHHHHHh-hhceeeeec
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999 999999999
Q ss_pred chhHHHHHHHhhhccCCCCccccccCCCCceEEEeeHHHHHhhhccccCCCceEEEEccccccCCCccHHHHHHhhcccc
Q 042857 839 CAKARAIIRQYEWHASDPDNLNKKTSSYKFNVLLTTYEMILADSSHLRGVPWEVLVVDEGHRLKNSGSKLFSLLNSFSFQ 918 (1404)
Q Consensus 839 ~~~~R~~ir~~E~~~~~~~~~~~~~~~~kfdVvITTYe~l~~d~~~L~~i~w~lVIVDEAHrlKN~~Sk~~~~L~~l~~~ 918 (1404)
+..+|++|++|||+.... ....+|+++||||+++.+|..+|..++|.+++|||||||||..++++..|..+...
T Consensus 453 ~~~sr~~i~~ye~~~~~~------~~~lkf~~lltTye~~LkDk~~L~~i~w~~~~vDeahrLkN~~~~l~~~l~~f~~~ 526 (1373)
T KOG0384|consen 453 NLESRQLIRQYEFYHSSN------TKKLKFNALLTTYEIVLKDKAELSKIPWRYLLVDEAHRLKNDESKLYESLNQFKMN 526 (1373)
T ss_pred chhHHHHHHHHHheecCC------ccccccceeehhhHHHhccHhhhccCCcceeeecHHhhcCchHHHHHHHHHHhccc
Confidence 999999999999987642 34579999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEeccCCCCChHHHHHHhhhhCCCCCCChhHHHHHhccccchHHHHHHHHhhhhhhhhhhHhhhhhcCCCceEEEEE
Q 042857 919 HRVLLTGTPLQNNIGEMYNLLNFLQPASFPSLSSFEEKFNDLTTTQKVEELKKLVAPHMLRRLKKDAMQNIPPKTERMVP 998 (1404)
Q Consensus 919 ~rLLLTGTPlqNnl~EL~sLL~fL~P~~f~s~~~F~~~f~d~~~~~~i~~L~~lL~p~mLRR~K~dV~~~LPpk~e~iV~ 998 (1404)
||||+||||+||++.|||+|||||+|+.|.+..+|...| +......+..||.+|+||||||+|+||.+.||++.|.|+.
T Consensus 527 ~rllitgTPlQNsikEL~sLl~Fl~P~kf~~~~~f~~~~-~~~~e~~~~~L~~~L~P~~lRr~kkdvekslp~k~E~Ilr 605 (1373)
T KOG0384|consen 527 HRLLITGTPLQNSLKELWSLLHFLMPGKFDSWDEFLEEF-DEETEEQVRKLQQILKPFLLRRLKKDVEKSLPPKEETILR 605 (1373)
T ss_pred ceeeecCCCccccHHHHHHHhcccCCCCCCcHHHHHHhh-cchhHHHHHHHHHHhhHHHHHHHHhhhccCCCCCcceEEE
Confidence 999999999999999999999999999999999999999 7777889999999999999999999999999999999999
Q ss_pred ecCCHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHhCCCCCCCCCCCCCC------cHHHHHHHHHhhhhH
Q 042857 999 VELSSIQAEYYRAMLTKNYQILRNIGKGVAQQSMLNIVMQLRKVCNHPYLIPGTEPDSG------SVEFLHEMRIKASAK 1072 (1404)
Q Consensus 999 V~LS~~Qk~~Y~~il~~n~~~L~~~~kg~~~~sllnilm~LRK~cnHP~L~~~~e~~~~------~~e~l~~~~i~~SgK 1072 (1404)
|+||++|++||++||++|+.+|....++.. .+|+|++|.||||||||||+.+++.... ..+.....+|.+|||
T Consensus 606 Vels~lQk~yYk~ILtkN~~~LtKG~~g~~-~~lLNimmELkKccNHpyLi~gaee~~~~~~~~~~~d~~L~~lI~sSGK 684 (1373)
T KOG0384|consen 606 VELSDLQKQYYKAILTKNFSALTKGAKGST-PSLLNIMMELKKCCNHPYLIKGAEEKILGDFRDKMRDEALQALIQSSGK 684 (1373)
T ss_pred eehhHHHHHHHHHHHHhhHHHHhccCCCCC-chHHHHHHHHHHhcCCccccCcHHHHHHHhhhhcchHHHHHHHHHhcCc
Confidence 999999999999999999999988766655 8999999999999999999998774321 123456678999999
Q ss_pred HHHHHHHHHHHHHcCCeEEEEecchhHHHHHHHHHhhhcCCceEEEEeCCCCHHHHHHHHHHHhcCCC-ceEEEeecccc
Q 042857 1073 LTLLHSMLKVLYKEGHRVLIFSQMTKLLDILEDYLNIEFGPKTYERVDGSVSVGDRQAAITRFNQDKS-RFVFLLSTRSC 1151 (1404)
Q Consensus 1073 l~~L~kLL~kl~~~G~KVLIFSq~~~~LDiLed~L~~~f~g~~y~rLdGs~s~~eRq~~Id~Fn~~~s-~~VfLLSTrAg 1151 (1404)
|.+|++||.+|++.||||||||||++|||||++||..+ +|.|.||||++.++.||++||+||++++ .||||||||||
T Consensus 685 lVLLDKLL~rLk~~GHrVLIFSQMVRmLDIL~eYL~~r--~ypfQRLDGsvrgelRq~AIDhFnap~SddFvFLLSTRAG 762 (1373)
T KOG0384|consen 685 LVLLDKLLPRLKEGGHRVLIFSQMVRMLDILAEYLSLR--GYPFQRLDGSVRGELRQQAIDHFNAPDSDDFVFLLSTRAG 762 (1373)
T ss_pred EEeHHHHHHHHhcCCceEEEhHHHHHHHHHHHHHHHHc--CCcceeccCCcchHHHHHHHHhccCCCCCceEEEEecccC
Confidence 99999999999999999999999999999999999977 8999999999999999999999999887 79999999999
Q ss_pred cccccccCCCEEEEEcCCCCHhHHHHHHHhhhccCCCCcEEEEEEeeCCCHHHHHHHHHHHHHhhhHHHhcCCC------
Q 042857 1152 GLGINLATADTVIIYDSDFNPHADIQAMNRAHRIGQSKRLLVYRLVVRASVEERILQLAKKKLMLDQLFVNKSG------ 1225 (1404)
Q Consensus 1152 G~GINL~~AdtVIi~DsdWNP~~d~QAigRahRiGQ~k~V~VYrLvt~~TvEE~Ilq~a~~Kl~L~~~vv~~~~------ 1225 (1404)
|+||||++||||||||+||||++|+||++|||||||++.|.||||||++||||.|+++|++||.|+++|++.+.
T Consensus 763 GLGINLatADTVIIFDSDWNPQNDLQAqARaHRIGQkk~VnVYRLVTk~TvEeEilERAk~KmvLD~aVIQ~m~t~~~~s 842 (1373)
T KOG0384|consen 763 GLGINLATADTVIIFDSDWNPQNDLQAQARAHRIGQKKHVNVYRLVTKNTVEEEILERAKLKMVLDHAVIQRMDTKGKTS 842 (1373)
T ss_pred cccccccccceEEEeCCCCCcchHHHHHHHHHhhcccceEEEEEEecCCchHHHHHHHHHHHhhhHHHHHHhhccccccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999997432
Q ss_pred -----ChHHHHHHHHhhHHHHhcCCCC
Q 042857 1226 -----SQKEVEDILRWGTEELFNDSPG 1247 (1404)
Q Consensus 1226 -----s~~eledilk~Ga~~Lf~~~~~ 1247 (1404)
++.++++||+|||++||.+.+.
T Consensus 843 ~~~~f~K~ELsaILKfGA~~lfke~en 869 (1373)
T KOG0384|consen 843 KSNPFSKEELSAILKFGAYELFKEEEN 869 (1373)
T ss_pred CCCCCCHHHHHHHHHhchHHhhhcccc
Confidence 5799999999999999987654
No 2
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=100.00 E-value=4.3e-117 Score=1047.01 Aligned_cols=486 Identities=46% Similarity=0.750 Sum_probs=453.9
Q ss_pred ccCCccCCCCCCCHHHHHHHHHHHHhhccCCcEEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEeCCCChHHHHHHH
Q 042857 745 TEQPEELKGGALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLSTMPNWLAEF 824 (1404)
Q Consensus 745 ~~qP~~l~g~~L~pyQlegVnwL~~~~~~~~~~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP~Sll~nW~rEf 824 (1404)
..+|.++.||.|+|||++|||||+..|.++.|||||||||||||+|+|+||.++....+..|||||+||.|++.||.+||
T Consensus 157 ~~sP~~v~~g~lr~YQveGlnWLi~l~engingILaDEMGLGKTlQtIs~l~yl~~~~~~~GPfLVi~P~StL~NW~~Ef 236 (971)
T KOG0385|consen 157 EDSPSYVKGGELRDYQLEGLNWLISLYENGINGILADEMGLGKTLQTISLLGYLKGRKGIPGPFLVIAPKSTLDNWMNEF 236 (971)
T ss_pred cCCchhhcCCccchhhhccHHHHHHHHhcCcccEeehhcccchHHHHHHHHHHHHHhcCCCCCeEEEeeHhhHHHHHHHH
Confidence 34899999999999999999999999999999999999999999999999999998888899999999999999999999
Q ss_pred HHHCCCCcEEEEecchhHHHHHHHhhhccCCCCccccccCCCCceEEEeeHHHHHhhhccccCCCceEEEEccccccCCC
Q 042857 825 ALWAPNLNVVEYHGCAKARAIIRQYEWHASDPDNLNKKTSSYKFNVLLTTYEMILADSSHLRGVPWEVLVVDEGHRLKNS 904 (1404)
Q Consensus 825 ~kw~P~l~Vvvy~G~~~~R~~ir~~E~~~~~~~~~~~~~~~~kfdVvITTYe~l~~d~~~L~~i~w~lVIVDEAHrlKN~ 904 (1404)
.+|+|++++++|+|++..|..++.-.+ ....|+|+||||++++++..+|..++|.++||||||||||.
T Consensus 237 ~rf~P~l~~~~~~Gdk~eR~~~~r~~~------------~~~~fdV~iTsYEi~i~dk~~lk~~~W~ylvIDEaHRiKN~ 304 (971)
T KOG0385|consen 237 KRFTPSLNVVVYHGDKEERAALRRDIM------------LPGRFDVCITSYEIAIKDKSFLKKFNWRYLVIDEAHRIKNE 304 (971)
T ss_pred HHhCCCcceEEEeCCHHHHHHHHHHhh------------ccCCCceEeehHHHHHhhHHHHhcCCceEEEechhhhhcch
Confidence 999999999999999999987765332 12389999999999999999999999999999999999999
Q ss_pred ccHHHHHHhhcccccEEEEeccCCCCChHHHHHHhhhhCCCCCCChhHHHHHhcc---ccchHHHHHHHHhhhhhhhhhh
Q 042857 905 GSKLFSLLNSFSFQHRVLLTGTPLQNNIGEMYNLLNFLQPASFPSLSSFEEKFND---LTTTQKVEELKKLVAPHMLRRL 981 (1404)
Q Consensus 905 ~Sk~~~~L~~l~~~~rLLLTGTPlqNnl~EL~sLL~fL~P~~f~s~~~F~~~f~d---~~~~~~i~~L~~lL~p~mLRR~ 981 (1404)
.|++++.|+.|.+.+||||||||+|||+.|||+||+||.|++|.+.+.|..||.. ....+.+.+||.+|+||+|||+
T Consensus 305 ~s~L~~~lr~f~~~nrLLlTGTPLQNNL~ELWaLLnFllPdiF~~~e~F~swF~~~~~~~~~e~v~~Lh~vL~pFlLRR~ 384 (971)
T KOG0385|consen 305 KSKLSKILREFKTDNRLLLTGTPLQNNLHELWALLNFLLPDIFNSAEDFDSWFDFTNCEGDQELVSRLHKVLRPFLLRRI 384 (971)
T ss_pred hhHHHHHHHHhcccceeEeeCCcccccHHHHHHHHHhhchhhccCHHHHHHHHcccccccCHHHHHHHHhhhhHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999975 3345678999999999999999
Q ss_pred HhhhhhcCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCcHHH
Q 042857 982 KKDAMQNIPPKTERMVPVELSSIQAEYYRAMLTKNYQILRNIGKGVAQQSMLNIVMQLRKVCNHPYLIPGTEPDSGSVEF 1061 (1404)
Q Consensus 982 K~dV~~~LPpk~e~iV~V~LS~~Qk~~Y~~il~~n~~~L~~~~kg~~~~sllnilm~LRK~cnHP~L~~~~e~~~~~~e~ 1061 (1404)
|.+|.+.|||+.+.+++|.||.+|+++|++++.+....+...+.+ ....|+||+|+|||||||||||++++|. .+..
T Consensus 385 K~dVe~sLppKkE~~iyvgms~mQkk~Y~~iL~kdl~~~n~~~~~-~k~kL~NI~mQLRKccnHPYLF~g~ePg--~pyt 461 (971)
T KOG0385|consen 385 KSDVEKSLPPKKELIIYVGMSSMQKKWYKAILMKDLDALNGEGKG-EKTKLQNIMMQLRKCCNHPYLFDGAEPG--PPYT 461 (971)
T ss_pred HHhHhhcCCCcceeeEeccchHHHHHHHHHHHHhcchhhcccccc-hhhHHHHHHHHHHHhcCCccccCCCCCC--CCCC
Confidence 999999999999999999999999999999999998888765543 4678999999999999999999998773 2223
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHcCCeEEEEecchhHHHHHHHHHhhhcCCceEEEEeCCCCHHHHHHHHHHHhcCCC-
Q 042857 1062 LHEMRIKASAKLTLLHSMLKVLYKEGHRVLIFSQMTKLLDILEDYLNIEFGPKTYERVDGSVSVGDRQAAITRFNQDKS- 1140 (1404)
Q Consensus 1062 l~~~~i~~SgKl~~L~kLL~kl~~~G~KVLIFSq~~~~LDiLed~L~~~f~g~~y~rLdGs~s~~eRq~~Id~Fn~~~s- 1140 (1404)
..+.++..||||.+|++||++|+++||||||||||++|||||++|+..+ +|.|+||||+++.++|..+|+.||++++
T Consensus 462 tdehLv~nSGKm~vLDkLL~~Lk~~GhRVLIFSQmt~mLDILeDyc~~R--~y~ycRiDGSt~~eeR~~aI~~fn~~~s~ 539 (971)
T KOG0385|consen 462 TDEHLVTNSGKMLVLDKLLPKLKEQGHRVLIFSQMTRMLDILEDYCMLR--GYEYCRLDGSTSHEEREDAIEAFNAPPSE 539 (971)
T ss_pred cchHHHhcCcceehHHHHHHHHHhCCCeEEEeHHHHHHHHHHHHHHHhc--CceeEeecCCCCcHHHHHHHHhcCCCCcc
Confidence 4567899999999999999999999999999999999999999999865 9999999999999999999999999885
Q ss_pred ceEEEeecccccccccccCCCEEEEEcCCCCHhHHHHHHHhhhccCCCCcEEEEEEeeCCCHHHHHHHHHHHHHhhhHHH
Q 042857 1141 RFVFLLSTRSCGLGINLATADTVIIYDSDFNPHADIQAMNRAHRIGQSKRLLVYRLVVRASVEERILQLAKKKLMLDQLF 1220 (1404)
Q Consensus 1141 ~~VfLLSTrAgG~GINL~~AdtVIi~DsdWNP~~d~QAigRahRiGQ~k~V~VYrLvt~~TvEE~Ilq~a~~Kl~L~~~v 1220 (1404)
.|||||||||||+||||++|||||+||+||||+.|+||++|||||||+++|.||||||.+||||+|+++|..|+.|+++|
T Consensus 540 ~FiFlLSTRAGGLGINL~aADtVIlyDSDWNPQ~DLQAmDRaHRIGQ~K~V~V~RLitentVEe~IveRA~~KL~Ld~~V 619 (971)
T KOG0385|consen 540 KFIFLLSTRAGGLGINLTAADTVILYDSDWNPQVDLQAMDRAHRIGQKKPVVVYRLITENTVEEKIVERAAAKLRLDKLV 619 (971)
T ss_pred eEEEEEeccccccccccccccEEEEecCCCCchhhhHHHHHHHhhCCcCceEEEEEeccchHHHHHHHHHHHHhchhhhh
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCC---------CChHHHHHHHHhhHHHHhcCCCC
Q 042857 1221 VNKS---------GSQKEVEDILRWGTEELFNDSPG 1247 (1404)
Q Consensus 1221 v~~~---------~s~~eledilk~Ga~~Lf~~~~~ 1247 (1404)
++.. .++.++-+|+++|+..+|...+.
T Consensus 620 Iq~g~l~~~~~~~~~k~~~l~~~r~g~~~~f~~~es 655 (971)
T KOG0385|consen 620 IQQGRLEEQKSNGLGKDELLNLLRFGADPVFESKES 655 (971)
T ss_pred hccCchhhhhccccchHHHHHHHHcCchhhhhhccc
Confidence 9865 24678899999999999976543
No 3
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=100.00 E-value=4e-97 Score=897.62 Aligned_cols=478 Identities=44% Similarity=0.699 Sum_probs=430.3
Q ss_pred hhhccCCccCCCCCCCHHHHHHHHHHHHhhccCCcEEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEeCCCChHHHH
Q 042857 742 VALTEQPEELKGGALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLSTMPNWL 821 (1404)
Q Consensus 742 ~~l~~qP~~l~g~~L~pyQlegVnwL~~~~~~~~~~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP~Sll~nW~ 821 (1404)
..+.+||..+.||+|++||+.||.||+.+|.++.|||||||||||||+|+|++|.|++......||+|||||+++|.||.
T Consensus 381 E~v~~Qps~l~GG~Lk~YQl~GLqWmVSLyNNnLNGILADEMGLGKTIQtIsLitYLmE~K~~~GP~LvivPlstL~NW~ 460 (1157)
T KOG0386|consen 381 ENVAKQPSSLQGGELKEYQLHGLQWMVSLYNNNLNGILADEMGLGKTIQTISLITYLMEHKQMQGPFLIIVPLSTLVNWS 460 (1157)
T ss_pred hccccCcchhcCCCCchhhhhhhHHHhhccCCCcccccchhcccchHHHHHHHHHHHHHHcccCCCeEEeccccccCCch
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHCCCCcEEEEecchhHHHHHHHhhhccCCCCccccccCCCCceEEEeeHHHHHhhhccccCCCceEEEEcccccc
Q 042857 822 AEFALWAPNLNVVEYHGCAKARAIIRQYEWHASDPDNLNKKTSSYKFNVLLTTYEMILADSSHLRGVPWEVLVVDEGHRL 901 (1404)
Q Consensus 822 rEf~kw~P~l~Vvvy~G~~~~R~~ir~~E~~~~~~~~~~~~~~~~kfdVvITTYe~l~~d~~~L~~i~w~lVIVDEAHrl 901 (1404)
.||.+|+|.+..+.|.|.+..|..+..- ....+|+|++|||+.++++...|.+|.|.++||||+|||
T Consensus 461 ~Ef~kWaPSv~~i~YkGtp~~R~~l~~q-------------ir~gKFnVLlTtyEyiikdk~lLsKI~W~yMIIDEGHRm 527 (1157)
T KOG0386|consen 461 SEFPKWAPSVQKIQYKGTPQQRSGLTKQ-------------QRHGKFNVLLTTYEYIIKDKALLSKISWKYMIIDEGHRM 527 (1157)
T ss_pred hhccccccceeeeeeeCCHHHHhhHHHH-------------HhcccceeeeeeHHHhcCCHHHHhccCCcceeecccccc
Confidence 9999999999999999999999765442 233799999999999999999999999999999999999
Q ss_pred CCCccHHHHHHh-hcccccEEEEeccCCCCChHHHHHHhhhhCCCCCCChhHHHHHhcccc----------ch---HHHH
Q 042857 902 KNSGSKLFSLLN-SFSFQHRVLLTGTPLQNNIGEMYNLLNFLQPASFPSLSSFEEKFNDLT----------TT---QKVE 967 (1404)
Q Consensus 902 KN~~Sk~~~~L~-~l~~~~rLLLTGTPlqNnl~EL~sLL~fL~P~~f~s~~~F~~~f~d~~----------~~---~~i~ 967 (1404)
||..+++...|. .+.+++|+||||||+||++.|||+||+||.|.+|.+...|.+||+.+. .. -.+.
T Consensus 528 KNa~~KLt~~L~t~y~~q~RLLLTGTPLQN~LpELWaLLNFlLP~IFnS~~~FeqWFN~PFantGek~eLteEEtlLIIr 607 (1157)
T KOG0386|consen 528 KNAICKLTDTLNTHYRAQRRLLLTGTPLQNNLPELWALLNFLLPNIFNSCKAFEQWFNQPFANTGEKVELTEEETLLIIR 607 (1157)
T ss_pred cchhhHHHHHhhccccchhhhhhcCChhhhccHHHHHHHHHhccchhhhHhHHHHHhhhhhhhcCCcccccchHHHHHHH
Confidence 999999999999 778999999999999999999999999999999999999999997542 11 2478
Q ss_pred HHHHhhhhhhhhhhHhhhhhcCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHhCCCC
Q 042857 968 ELKKLVAPHMLRRLKKDAMQNIPPKTERMVPVELSSIQAEYYRAMLTKNYQILRNIGKGVAQQSMLNIVMQLRKVCNHPY 1047 (1404)
Q Consensus 968 ~L~~lL~p~mLRR~K~dV~~~LPpk~e~iV~V~LS~~Qk~~Y~~il~~n~~~L~~~~kg~~~~sllnilm~LRK~cnHP~ 1047 (1404)
+||++|+||+|||.|++|...||.+++.++.|.||..|+.+|+.+.....-.+...........++|.+|+|||+|||||
T Consensus 608 RLHkVLRPFlLRRlKkeVE~~LPdKve~viKC~mSalQq~lY~~m~~~g~l~~d~~~g~~g~k~L~N~imqLRKiCNHP~ 687 (1157)
T KOG0386|consen 608 RLHKVLRPFLLRRLKKEVEQELPDKVEDVIKCDMSALQQSLYKQMQNKGQLLKDTAKGKKGYKPLFNTIMQLRKLCNHPY 687 (1157)
T ss_pred HHHHhhhHHHHHhhhHHHhhhCchhhhHhhheehhhhhHhhhHHHHhCCCCCcCchhccccchhhhhHhHHHHHhcCCch
Confidence 99999999999999999999999999999999999999999998875533222221122234689999999999999999
Q ss_pred CCCCCCCCCCcHHHHHHHHHhhhhHHHHHHHHHHHHHHcCCeEEEEecchhHHHHHHHHHhhhcCCceEEEEeCCCCHHH
Q 042857 1048 LIPGTEPDSGSVEFLHEMRIKASAKLTLLHSMLKVLYKEGHRVLIFSQMTKLLDILEDYLNIEFGPKTYERVDGSVSVGD 1127 (1404)
Q Consensus 1048 L~~~~e~~~~~~e~l~~~~i~~SgKl~~L~kLL~kl~~~G~KVLIFSq~~~~LDiLed~L~~~f~g~~y~rLdGs~s~~e 1127 (1404)
++...+...... +....++..|||+.+|+++|++|++.|||||+|+||++++++|++||..+ ++.|.|+||++...+
T Consensus 688 lf~~ve~~~~~~-~~~~dL~R~sGKfELLDRiLPKLkatgHRVLlF~qMTrlmdimEdyL~~~--~~kYlRLDG~TK~~e 764 (1157)
T KOG0386|consen 688 LFANVENSYTLH-YDIKDLVRVSGKFELLDRILPKLKATGHRVLLFSQMTRLMDILEDYLQIR--EYKYLRLDGQTKVEE 764 (1157)
T ss_pred hhhhhccccccc-cChhHHHHhccHHHHHHhhhHHHHhcCcchhhHHHHHHHHHHHHHHHhhh--hhheeeecCCcchhh
Confidence 997665432111 11145789999999999999999999999999999999999999999965 899999999999999
Q ss_pred HHHHHHHHhcCCC-ceEEEeecccccccccccCCCEEEEEcCCCCHhHHHHHHHhhhccCCCCcEEEEEEeeCCCHHHHH
Q 042857 1128 RQAAITRFNQDKS-RFVFLLSTRSCGLGINLATADTVIIYDSDFNPHADIQAMNRAHRIGQSKRLLVYRLVVRASVEERI 1206 (1404)
Q Consensus 1128 Rq~~Id~Fn~~~s-~~VfLLSTrAgG~GINL~~AdtVIi~DsdWNP~~d~QAigRahRiGQ~k~V~VYrLvt~~TvEE~I 1206 (1404)
|-.+++.||.+++ .|+||+||+|||+|+||++||||||||+||||+++.||.+|||||||+++|.|+||++.++|||.|
T Consensus 765 Rg~ll~~FN~Pds~yf~FllstragglglNlQtadtviifdsdwnp~~d~qaqdrahrigq~~evRv~rl~tv~sveE~i 844 (1157)
T KOG0386|consen 765 RGDLLEIFNAPDSPYFIFLLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKKEVRVLRLITVNSVEEKI 844 (1157)
T ss_pred HHHHHHHhcCCCCceeeeeeeecccccccchhhcceEEEecCCCCchhHHHHHHHHHHhhchhheeeeeeehhhHHHHHH
Confidence 9999999999887 699999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhHHHhcCCC-----ChHHHHHHHH
Q 042857 1207 LQLAKKKLMLDQLFVNKSG-----SQKEVEDILR 1235 (1404)
Q Consensus 1207 lq~a~~Kl~L~~~vv~~~~-----s~~eledilk 1235 (1404)
+..|..|+.++.-|+.... ...+-+.+|+
T Consensus 845 l~~a~~Kl~~d~kviqag~fdn~st~~eR~~~Le 878 (1157)
T KOG0386|consen 845 LAEAFYKLDVDGKVIQAGKFDNKSTAEEREMFLE 878 (1157)
T ss_pred HHHHHHhcCchHhhhhcccccCCCcHHHHHHHHH
Confidence 9999999999999886432 3445555553
No 4
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=100.00 E-value=1.7e-95 Score=867.07 Aligned_cols=465 Identities=42% Similarity=0.645 Sum_probs=409.5
Q ss_pred ccCCccC-CCCCCCHHHHHHHHHHHHhhccCCcEEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEeCCCChHHHHHH
Q 042857 745 TEQPEEL-KGGALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLSTMPNWLAE 823 (1404)
Q Consensus 745 ~~qP~~l-~g~~L~pyQlegVnwL~~~~~~~~~~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP~Sll~nW~rE 823 (1404)
.+||..+ .|.+|.|||+.|||||.-.|.++.+||||||||||||+|+|||+++|...+. .||+|||||.||+.||.+|
T Consensus 388 ~~qp~~l~s~i~LkdYQlvGvNWL~Llyk~~l~gILADEMGLGKTiQvIaFlayLkq~g~-~gpHLVVvPsSTleNWlrE 466 (941)
T KOG0389|consen 388 TEQPKLLSSGIQLKDYQLVGVNWLLLLYKKKLNGILADEMGLGKTIQVIAFLAYLKQIGN-PGPHLVVVPSSTLENWLRE 466 (941)
T ss_pred ccCccccCCCCcccchhhhhHHHHHHHHHccccceehhhccCcchhHHHHHHHHHHHcCC-CCCcEEEecchhHHHHHHH
Confidence 4577777 4679999999999999999999999999999999999999999999987665 7899999999999999999
Q ss_pred HHHHCCCCcEEEEecchhHHHHHHHhhhccCCCCccccccCCCCceEEEeeHHHHHh---hhccccCCCceEEEEccccc
Q 042857 824 FALWAPNLNVVEYHGCAKARAIIRQYEWHASDPDNLNKKTSSYKFNVLLTTYEMILA---DSSHLRGVPWEVLVVDEGHR 900 (1404)
Q Consensus 824 f~kw~P~l~Vvvy~G~~~~R~~ir~~E~~~~~~~~~~~~~~~~kfdVvITTYe~l~~---d~~~L~~i~w~lVIVDEAHr 900 (1404)
|.+|||.+.|..|||+...|..+|..-- ....+|||+||||.++.. |..+|+..+|+++|+||+|.
T Consensus 467 f~kwCPsl~Ve~YyGSq~ER~~lR~~i~-----------~~~~~ydVllTTY~la~~~kdDRsflk~~~~n~viyDEgHm 535 (941)
T KOG0389|consen 467 FAKWCPSLKVEPYYGSQDERRELRERIK-----------KNKDDYDVLLTTYNLAASSKDDRSFLKNQKFNYVIYDEGHM 535 (941)
T ss_pred HHHhCCceEEEeccCcHHHHHHHHHHHh-----------ccCCCccEEEEEeecccCChHHHHHHHhccccEEEecchhh
Confidence 9999999999999999999998887531 122489999999999864 68899999999999999999
Q ss_pred cCCCccHHHHHHhhcccccEEEEeccCCCCChHHHHHHhhhhCCCCCCC-hhHHHHHhcccc-----------chHHHHH
Q 042857 901 LKNSGSKLFSLLNSFSFQHRVLLTGTPLQNNIGEMYNLLNFLQPASFPS-LSSFEEKFNDLT-----------TTQKVEE 968 (1404)
Q Consensus 901 lKN~~Sk~~~~L~~l~~~~rLLLTGTPlqNnl~EL~sLL~fL~P~~f~s-~~~F~~~f~d~~-----------~~~~i~~ 968 (1404)
|||..|.+++.|..+++.+||||||||+||||.||++||.|+.|..|.+ ..++..-|..-. ..+++.+
T Consensus 536 LKN~~SeRy~~LM~I~An~RlLLTGTPLQNNL~ELiSLL~FvlP~vF~~~~~dl~~if~~k~~~d~d~e~~~l~qerIsr 615 (941)
T KOG0389|consen 536 LKNRTSERYKHLMSINANFRLLLTGTPLQNNLKELISLLAFVLPKVFDSSMEDLDVIFKAKKTSDGDIENALLSQERISR 615 (941)
T ss_pred hhccchHHHHHhccccccceEEeeCCcccccHHHHHHHHHHHhhHhhhccchHHHHHHhccCCccchhhHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999964 466666665322 2457899
Q ss_pred HHHhhhhhhhhhhHhhhhhcCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHhCCCCC
Q 042857 969 LKKLVAPHMLRRLKKDAMQNIPPKTERMVPVELSSIQAEYYRAMLTKNYQILRNIGKGVAQQSMLNIVMQLRKVCNHPYL 1048 (1404)
Q Consensus 969 L~~lL~p~mLRR~K~dV~~~LPpk~e~iV~V~LS~~Qk~~Y~~il~~n~~~L~~~~kg~~~~sllnilm~LRK~cnHP~L 1048 (1404)
.+.++.||+|||.|.+|++.||||..++.+|+|+..|+.+|..++......+..........+ .+++|+|||++|||.|
T Consensus 616 AK~im~PFILRR~K~qVL~~LPpK~~~Ie~c~mse~Q~~~Y~~~~~~~~~~~~~~~~ns~~~~-~~vlmqlRK~AnHPLL 694 (941)
T KOG0389|consen 616 AKTIMKPFILRRLKSQVLKQLPPKIQRIEYCEMSEKQKQLYDELIELYDVKLNEVSKNSELKS-GNVLMQLRKAANHPLL 694 (941)
T ss_pred HHHhhhHHHHHHHHHHHHHhcCCccceeEeeecchHHHHHHHHHHHHHhhhcccccccccccc-chHHHHHHHHhcChhH
Confidence 999999999999999999999999999999999999999999998765322222222111112 5699999999999999
Q ss_pred CCCCCCC-----------------CCcHHH------------HHHH---------------HHhhhhHHHHHHHHHHHHH
Q 042857 1049 IPGTEPD-----------------SGSVEF------------LHEM---------------RIKASAKLTLLHSMLKVLY 1084 (1404)
Q Consensus 1049 ~~~~e~~-----------------~~~~e~------------l~~~---------------~i~~SgKl~~L~kLL~kl~ 1084 (1404)
+.....+ .+...+ ++.+ .|-.|||+..|..||++++
T Consensus 695 ~R~~Y~de~L~~mak~il~e~ay~~~n~qyIfEDm~~msDfelHqLc~~f~~~~~f~L~d~~~mdSgK~r~L~~LLp~~k 774 (941)
T KOG0389|consen 695 FRSIYTDEKLRKMAKRILNEPAYKKANEQYIFEDMEVMSDFELHQLCCQFRHLSKFQLKDDLWMDSGKCRKLKELLPKIK 774 (941)
T ss_pred HHHhccHHHHHHHHHHHhCchhhhhcCHHHHHHHHHhhhHHHHHHHHHhcCCCcccccCCchhhhhhhHhHHHHHHHHHh
Confidence 8432211 011111 1111 3456999999999999999
Q ss_pred HcCCeEEEEecchhHHHHHHHHHhhhcCCceEEEEeCCCCHHHHHHHHHHHhcCCCceEEEeecccccccccccCCCEEE
Q 042857 1085 KEGHRVLIFSQMTKLLDILEDYLNIEFGPKTYERVDGSVSVGDRQAAITRFNQDKSRFVFLLSTRSCGLGINLATADTVI 1164 (1404)
Q Consensus 1085 ~~G~KVLIFSq~~~~LDiLed~L~~~f~g~~y~rLdGs~s~~eRq~~Id~Fn~~~s~~VfLLSTrAgG~GINL~~AdtVI 1164 (1404)
+.|+|||||||||.|||||+-+|... ++.|.|+||++....||.+|+.||.+.+.|||||||+|||.||||+.||+||
T Consensus 775 ~~G~RVLiFSQFTqmLDILE~~L~~l--~~~ylRLDGsTqV~~RQ~lId~Fn~d~difVFLLSTKAGG~GINLt~An~VI 852 (941)
T KOG0389|consen 775 KKGDRVLIFSQFTQMLDILEVVLDTL--GYKYLRLDGSTQVNDRQDLIDEFNTDKDIFVFLLSTKAGGFGINLTCANTVI 852 (941)
T ss_pred hcCCEEEEeeHHHHHHHHHHHHHHhc--CceEEeecCCccchHHHHHHHhhccCCceEEEEEeeccCcceecccccceEE
Confidence 99999999999999999999999987 8999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCCHhHHHHHHHhhhccCCCCcEEEEEEeeCCCHHHHHHHHHHHHHhhhHHHhcCC
Q 042857 1165 IYDSDFNPHADIQAMNRAHRIGQSKRLLVYRLVVRASVEERILQLAKKKLMLDQLFVNKS 1224 (1404)
Q Consensus 1165 i~DsdWNP~~d~QAigRahRiGQ~k~V~VYrLvt~~TvEE~Ilq~a~~Kl~L~~~vv~~~ 1224 (1404)
|+|.++||.+|.||.+||||+||+++|+|||||+++||||.|+++|+.|+.|+..+....
T Consensus 853 ihD~dFNP~dD~QAEDRcHRvGQtkpVtV~rLItk~TIEE~I~~lA~~KL~Le~~lt~~~ 912 (941)
T KOG0389|consen 853 IHDIDFNPYDDKQAEDRCHRVGQTKPVTVYRLITKSTIEEGILRLAKTKLALEADLTEDG 912 (941)
T ss_pred EeecCCCCcccchhHHHHHhhCCcceeEEEEEEecCcHHHHHHHHHHHhhhhhhhhccCc
Confidence 999999999999999999999999999999999999999999999999999999887643
No 5
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=100.00 E-value=6.2e-92 Score=898.82 Aligned_cols=483 Identities=43% Similarity=0.711 Sum_probs=441.6
Q ss_pred hhccCCccCCCCCCCHHHHHHHHHHHHhhccCCcEEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEeCCCChHHHHH
Q 042857 743 ALTEQPEELKGGALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLSTMPNWLA 822 (1404)
Q Consensus 743 ~l~~qP~~l~g~~L~pyQlegVnwL~~~~~~~~~~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP~Sll~nW~r 822 (1404)
.+..+|..+. ++|+|||++||+||+.+|.++.+||||||||||||+|+|+++.++.......+|+|||||.+++.||.+
T Consensus 158 ~l~~qP~~i~-~~Lr~YQleGlnWLi~l~~~g~gGILADEMGLGKTlQaIalL~~L~~~~~~~gp~LIVvP~SlL~nW~~ 236 (1033)
T PLN03142 158 RLLVQPSCIK-GKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEYRGITGPHMVVAPKSTLGNWMN 236 (1033)
T ss_pred eeccCChHhc-cchHHHHHHHHHHHHHHHhcCCCEEEEeCCCccHHHHHHHHHHHHHHhcCCCCCEEEEeChHHHHHHHH
Confidence 4567898888 699999999999999999999999999999999999999999998876777889999999999999999
Q ss_pred HHHHHCCCCcEEEEecchhHHHHHHHhhhccCCCCccccccCCCCceEEEeeHHHHHhhhccccCCCceEEEEccccccC
Q 042857 823 EFALWAPNLNVVEYHGCAKARAIIRQYEWHASDPDNLNKKTSSYKFNVLLTTYEMILADSSHLRGVPWEVLVVDEGHRLK 902 (1404)
Q Consensus 823 Ef~kw~P~l~Vvvy~G~~~~R~~ir~~E~~~~~~~~~~~~~~~~kfdVvITTYe~l~~d~~~L~~i~w~lVIVDEAHrlK 902 (1404)
||.+|+|.+++++|+|+...|..++...+. ..+|+|+||||+++..+...|..+.|++|||||||++|
T Consensus 237 Ei~kw~p~l~v~~~~G~~~eR~~~~~~~~~------------~~~~dVvITSYe~l~~e~~~L~k~~W~~VIvDEAHrIK 304 (1033)
T PLN03142 237 EIRRFCPVLRAVKFHGNPEERAHQREELLV------------AGKFDVCVTSFEMAIKEKTALKRFSWRYIIIDEAHRIK 304 (1033)
T ss_pred HHHHHCCCCceEEEeCCHHHHHHHHHHHhc------------ccCCCcceecHHHHHHHHHHhccCCCCEEEEcCccccC
Confidence 999999999999999999988776654321 24689999999999999999999999999999999999
Q ss_pred CCccHHHHHHhhcccccEEEEeccCCCCChHHHHHHhhhhCCCCCCChhHHHHHhccc---cchHHHHHHHHhhhhhhhh
Q 042857 903 NSGSKLFSLLNSFSFQHRVLLTGTPLQNNIGEMYNLLNFLQPASFPSLSSFEEKFNDL---TTTQKVEELKKLVAPHMLR 979 (1404)
Q Consensus 903 N~~Sk~~~~L~~l~~~~rLLLTGTPlqNnl~EL~sLL~fL~P~~f~s~~~F~~~f~d~---~~~~~i~~L~~lL~p~mLR 979 (1404)
|..++++++++.+.+.+||+|||||+||++.|||+||+||.|+.|++...|..+|... .....+..|+.+|.|||||
T Consensus 305 N~~Sklskalr~L~a~~RLLLTGTPlqNnl~ELwsLL~FL~P~~f~s~~~F~~~f~~~~~~~~~e~i~~L~~~L~pf~LR 384 (1033)
T PLN03142 305 NENSLLSKTMRLFSTNYRLLITGTPLQNNLHELWALLNFLLPEIFSSAETFDEWFQISGENDQQEVVQQLHKVLRPFLLR 384 (1033)
T ss_pred CHHHHHHHHHHHhhcCcEEEEecCCCCCCHHHHHHHHhcCCCCcCCCHHHHHHHHccccccchHHHHHHHHHHhhHHHhh
Confidence 9999999999999999999999999999999999999999999999999999999753 2345688999999999999
Q ss_pred hhHhhhhhcCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCcH
Q 042857 980 RLKKDAMQNIPPKTERMVPVELSSIQAEYYRAMLTKNYQILRNIGKGVAQQSMLNIVMQLRKVCNHPYLIPGTEPDSGSV 1059 (1404)
Q Consensus 980 R~K~dV~~~LPpk~e~iV~V~LS~~Qk~~Y~~il~~n~~~L~~~~kg~~~~sllnilm~LRK~cnHP~L~~~~e~~~~~~ 1059 (1404)
|+|.+|...|||+.+.+++|.||+.|+++|+.++.+....+.. +.....+++++|+||+||+||||+.+.++...
T Consensus 385 R~KsdV~~~LPpK~e~iv~v~LS~~Qk~lY~~ll~k~~~~l~~---g~~~~~LlnilmqLRk~cnHP~L~~~~ep~~~-- 459 (1033)
T PLN03142 385 RLKSDVEKGLPPKKETILKVGMSQMQKQYYKALLQKDLDVVNA---GGERKRLLNIAMQLRKCCNHPYLFQGAEPGPP-- 459 (1033)
T ss_pred hhHHHHhhhCCCceeEEEeeCCCHHHHHHHHHHHHHHHHHHhc---cccHHHHHHHHHHHHHHhCCHHhhhcccccCc--
Confidence 9999999999999999999999999999999999988776653 33456789999999999999999987665322
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHcCCeEEEEecchhHHHHHHHHHhhhcCCceEEEEeCCCCHHHHHHHHHHHhcCC
Q 042857 1060 EFLHEMRIKASAKLTLLHSMLKVLYKEGHRVLIFSQMTKLLDILEDYLNIEFGPKTYERVDGSVSVGDRQAAITRFNQDK 1139 (1404)
Q Consensus 1060 e~l~~~~i~~SgKl~~L~kLL~kl~~~G~KVLIFSq~~~~LDiLed~L~~~f~g~~y~rLdGs~s~~eRq~~Id~Fn~~~ 1139 (1404)
......++..|+|+.+|+++|..+...|+||||||||+.++++|+++|... ++.|++|||+++..+|+.+|++||+++
T Consensus 460 ~~~~e~lie~SgKl~lLdkLL~~Lk~~g~KVLIFSQft~~LdiLed~L~~~--g~~y~rIdGsts~~eRq~~Id~Fn~~~ 537 (1033)
T PLN03142 460 YTTGEHLVENSGKMVLLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMYR--GYQYCRIDGNTGGEDRDASIDAFNKPG 537 (1033)
T ss_pred ccchhHHhhhhhHHHHHHHHHHHHHhcCCeEEeehhHHHHHHHHHHHHHHc--CCcEEEECCCCCHHHHHHHHHHhcccc
Confidence 122345678899999999999999999999999999999999999999865 899999999999999999999999866
Q ss_pred C-ceEEEeecccccccccccCCCEEEEEcCCCCHhHHHHHHHhhhccCCCCcEEEEEEeeCCCHHHHHHHHHHHHHhhhH
Q 042857 1140 S-RFVFLLSTRSCGLGINLATADTVIIYDSDFNPHADIQAMNRAHRIGQSKRLLVYRLVVRASVEERILQLAKKKLMLDQ 1218 (1404)
Q Consensus 1140 s-~~VfLLSTrAgG~GINL~~AdtVIi~DsdWNP~~d~QAigRahRiGQ~k~V~VYrLvt~~TvEE~Ilq~a~~Kl~L~~ 1218 (1404)
+ .++|||||+|||+||||+.||+||+||+||||+.++||+||||||||+++|.||||++.+||||+|++++.+|+.|+.
T Consensus 538 s~~~VfLLSTrAGGlGINLt~Ad~VIiyD~dWNP~~d~QAidRaHRIGQkk~V~VyRLIt~gTIEEkIlera~~Kl~Ld~ 617 (1033)
T PLN03142 538 SEKFVFLLSTRAGGLGINLATADIVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLALDA 617 (1033)
T ss_pred CCceEEEEeccccccCCchhhCCEEEEeCCCCChHHHHHHHHHhhhcCCCceEEEEEEEeCCcHHHHHHHHHHHHHHHHH
Confidence 4 689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCC-------CChHHHHHHHHhhHHHHhcCC
Q 042857 1219 LFVNKS-------GSQKEVEDILRWGTEELFNDS 1245 (1404)
Q Consensus 1219 ~vv~~~-------~s~~eledilk~Ga~~Lf~~~ 1245 (1404)
+|++.+ .+.+++.+|+++|++.+|...
T Consensus 618 ~Vi~~g~~~~~~~~~~~eL~~ll~~ga~~~f~~~ 651 (1033)
T PLN03142 618 LVIQQGRLAEQKTVNKDELLQMVRYGAEMVFSSK 651 (1033)
T ss_pred HHHhcCcccccccCCHHHHHHHHHhChHHhhhcc
Confidence 999743 357899999999999999643
No 6
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=100.00 E-value=5.3e-92 Score=847.72 Aligned_cols=476 Identities=41% Similarity=0.662 Sum_probs=418.7
Q ss_pred CCCCCCCHHHHHHHHHHHHhhccCCcEEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEeCCCChHHHHHHHHHHCCC
Q 042857 751 LKGGALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLSTMPNWLAEFALWAPN 830 (1404)
Q Consensus 751 l~g~~L~pyQlegVnwL~~~~~~~~~~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP~Sll~nW~rEf~kw~P~ 830 (1404)
+-.|+||.||..|++||..+|.++.|||||||||||||||+|+|+++|.++.+..||+|||||.+++-||+-||++|||.
T Consensus 611 LLrGqLReYQkiGLdWLatLYeknlNGILADEmGLGKTIQtISllAhLACeegnWGPHLIVVpTsviLnWEMElKRwcPg 690 (1958)
T KOG0391|consen 611 LLRGQLREYQKIGLDWLATLYEKNLNGILADEMGLGKTIQTISLLAHLACEEGNWGPHLIVVPTSVILNWEMELKRWCPG 690 (1958)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHhcccceehhhhcccchhHHHHHHHHHHhcccCCCCceEEeechhhhhhhHHHhhhCCc
Confidence 33468999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEecchhHHHHHHHhhhccCCCCccccccCCCCceEEEeeHHHHHhhhccccCCCceEEEEccccccCCCccHHHH
Q 042857 831 LNVVEYHGCAKARAIIRQYEWHASDPDNLNKKTSSYKFNVLLTTYEMILADSSHLRGVPWEVLVVDEGHRLKNSGSKLFS 910 (1404)
Q Consensus 831 l~Vvvy~G~~~~R~~ir~~E~~~~~~~~~~~~~~~~kfdVvITTYe~l~~d~~~L~~i~w~lVIVDEAHrlKN~~Sk~~~ 910 (1404)
++++.|+|+...|..-|+ +|. +..-|||.||+|..+..|...|....|.|+|+||||++||..++.++
T Consensus 691 lKILTYyGs~kErkeKRq-gW~-----------kPnaFHVCItSYklv~qd~~AFkrkrWqyLvLDEaqnIKnfksqrWQ 758 (1958)
T KOG0391|consen 691 LKILTYYGSHKERKEKRQ-GWA-----------KPNAFHVCITSYKLVFQDLTAFKRKRWQYLVLDEAQNIKNFKSQRWQ 758 (1958)
T ss_pred ceEeeecCCHHHHHHHhh-ccc-----------CCCeeEEeehhhHHHHhHHHHHHhhccceeehhhhhhhcchhHHHHH
Confidence 999999999999987665 343 23479999999999999999999999999999999999999999999
Q ss_pred HHhhcccccEEEEeccCCCCChHHHHHHhhhhCCCCCCChhHHHHHhccccc----------hHHHHHHHHhhhhhhhhh
Q 042857 911 LLNSFSFQHRVLLTGTPLQNNIGEMYNLLNFLQPASFPSLSSFEEKFNDLTT----------TQKVEELKKLVAPHMLRR 980 (1404)
Q Consensus 911 ~L~~l~~~~rLLLTGTPlqNnl~EL~sLL~fL~P~~f~s~~~F~~~f~d~~~----------~~~i~~L~~lL~p~mLRR 980 (1404)
+|..|++++||||||||+||++.|||+|++||.|..|.+...|..||..... ...+.+||++|+||+|||
T Consensus 759 AllnfnsqrRLLLtgTPLqNslmELWSLmhFLmP~~f~shd~fk~wfsnPltgmiEgsqeyn~klV~RLHkVlrPfiLRR 838 (1958)
T KOG0391|consen 759 ALLNFNSQRRLLLTGTPLQNSLMELWSLMHFLMPQTFASHDIFKPWFSNPLTGMIEGSQEYNHKLVIRLHKVLRPFILRR 838 (1958)
T ss_pred HHhccchhheeeecCCchhhHHHHHHHHHHHhhchhhhhhhhHHHHhcCcchhhcccchhhchHHHHHHHHHhHHHHHHH
Confidence 9999999999999999999999999999999999999999999999986422 345889999999999999
Q ss_pred hHhhhhhcCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHhCCCCCCCCCC-------
Q 042857 981 LKKDAMQNIPPKTERMVPVELSSIQAEYYRAMLTKNYQILRNIGKGVAQQSMLNIVMQLRKVCNHPYLIPGTE------- 1053 (1404)
Q Consensus 981 ~K~dV~~~LPpk~e~iV~V~LS~~Qk~~Y~~il~~n~~~L~~~~kg~~~~sllnilm~LRK~cnHP~L~~~~e------- 1053 (1404)
+|.||++.||.|.|++|+|.||.-|+.+|..++.+.-.. ..-+.+.-.+++||+|+||||||||-||....
T Consensus 839 lK~dVEKQlpkKyEHvv~CrLSkRQR~LYDDfmsq~~TK--etLkSGhfmsVlnilmqLrKvCNHPnLfEpRpv~ssfV~ 916 (1958)
T KOG0391|consen 839 LKRDVEKQLPKKYEHVVKCRLSKRQRALYDDFMSQPGTK--ETLKSGHFMSVLNILMQLRKVCNHPNLFEPRPVGSSFVA 916 (1958)
T ss_pred HHHHHHHhcchhhhhheeeehhhhHHHHHHHHhhccchh--hHhhcCchhHHHHHHHHHHHHcCCCCcCCCCCCCccccc
Confidence 999999999999999999999999999999998753211 11123456789999999999999998761000
Q ss_pred ----------------------------------------------------------------C---------------
Q 042857 1054 ----------------------------------------------------------------P--------------- 1054 (1404)
Q Consensus 1054 ----------------------------------------------------------------~--------------- 1054 (1404)
+
T Consensus 917 e~l~~s~as~~~r~l~el~~k~p~~~~ls~~p~~~~vp~v~pas~~~sAspl~s~l~~ls~~~rPp~pt~~g~~F~~~aa 996 (1958)
T KOG0391|consen 917 EPLEYSSASKITRHLAELLSKKPIPRKLSEEPSTSAVPAVRPASAKLSASPLASALPQLSLRGRPPIPTFAGAPFQTSAA 996 (1958)
T ss_pred CceeccccccchhhhhhhccCCCCchhhhcCCCcccccccchhhhhhcccccccccccccCCCCCCCccccccccccchh
Confidence 0
Q ss_pred -------CC---------------------------------C-------------------------------------
Q 042857 1055 -------DS---------------------------------G------------------------------------- 1057 (1404)
Q Consensus 1055 -------~~---------------------------------~------------------------------------- 1057 (1404)
+. +
T Consensus 997 ~atsphteea~~~~v~r~~~~~~va~~q~r~lt~p~~~veq~n~~k~~~htt~~~p~~~~~svl~~~sv~t~pl~~ap~p 1076 (1958)
T KOG0391|consen 997 SATSPHTEEASASSVARLPSGEVVAIAQLRSLTGPQSRVEQPNTPKTLQHTTAGQPLQLQGSVLQIVSVPTQPLLRAPGP 1076 (1958)
T ss_pred cccCCccccccccchhcccchheeeccccccccCcHhHhhcCCCceeeeeecccCccccccceeeeccccccccccCCCC
Confidence 00 0
Q ss_pred ----------------------------------cH------------------------HHHHHH--------------
Q 042857 1058 ----------------------------------SV------------------------EFLHEM-------------- 1065 (1404)
Q Consensus 1058 ----------------------------------~~------------------------e~l~~~-------------- 1065 (1404)
+. +.+..+
T Consensus 1077 ~~~~l~~a~gsr~pv~~ddpa~ltp~sg~pkl~gtat~~~g~~pr~~~~klee~Rkrql~erl~ri~~~~APvyg~e~l~ 1156 (1958)
T KOG0391|consen 1077 VVMALHGALGSRPPVGGDDPAPLTPQSGVPKLVGTATLAVGEPPRAIGGKLEEERKRQLKERLDRIYLVNAPVYGRELLR 1156 (1958)
T ss_pred cceecchhhccCCCCCCCCccccccccCCCCCcchhhhccCCCccccccchhhHHHHHHHHHHHHHhhccCcccchhhhh
Confidence 00 000000
Q ss_pred ---------------------------------HH---------------------------------------------
Q 042857 1066 ---------------------------------RI--------------------------------------------- 1067 (1404)
Q Consensus 1066 ---------------------------------~i--------------------------------------------- 1067 (1404)
.|
T Consensus 1157 ~c~lp~e~i~p~~~ea~~e~~l~~~r~le~l~~iIdrfafv~ppvva~ppslra~~ppp~~~~r~r~~~~qlrsel~p~~ 1236 (1958)
T KOG0391|consen 1157 ICALPSEGIVPWRSEAPSELMLTLCRCLESLQDIIDRFAFVIPPVVAAPPSLRAPRPPPLYSHRMRILRQQLRSELAPYF 1236 (1958)
T ss_pred hhccchhhhccccccCchhhhhhHHHHHHHHHHHHHHheeecccccCCChhhcCCCCCcccchHHHHHHHHHHHHhcccc
Confidence 00
Q ss_pred --------------------hhhhHHHHHHHHHHHHHHcCCeEEEEecchhHHHHHHHHHhhhcCCceEEEEeCCCCHHH
Q 042857 1068 --------------------KASAKLTLLHSMLKVLYKEGHRVLIFSQMTKLLDILEDYLNIEFGPKTYERVDGSVSVGD 1127 (1404)
Q Consensus 1068 --------------------~~SgKl~~L~kLL~kl~~~G~KVLIFSq~~~~LDiLed~L~~~f~g~~y~rLdGs~s~~e 1127 (1404)
..+||++.|.-||.+|+..|||||||+||+.|||+|+.||..+ |+.|.||||++..++
T Consensus 1237 ~~~q~~~~r~lqFPelrLiqyDcGKLQtLAiLLqQLk~eghRvLIfTQMtkmLDVLeqFLnyH--gylY~RLDg~t~vEq 1314 (1958)
T KOG0391|consen 1237 QQRQTTAPRLLQFPELRLIQYDCGKLQTLAILLQQLKSEGHRVLIFTQMTKMLDVLEQFLNYH--GYLYVRLDGNTSVEQ 1314 (1958)
T ss_pred chhhccchhhhcCcchheeecccchHHHHHHHHHHHHhcCceEEehhHHHHHHHHHHHHHhhc--ceEEEEecCCccHHH
Confidence 1379999999999999999999999999999999999999976 999999999999999
Q ss_pred HHHHHHHHhcCCCceEEEeecccccccccccCCCEEEEEcCCCCHhHHHHHHHhhhccCCCCcEEEEEEeeCCCHHHHHH
Q 042857 1128 RQAAITRFNQDKSRFVFLLSTRSCGLGINLATADTVIIYDSDFNPHADIQAMNRAHRIGQSKRLLVYRLVVRASVEERIL 1207 (1404)
Q Consensus 1128 Rq~~Id~Fn~~~s~~VfLLSTrAgG~GINL~~AdtVIi~DsdWNP~~d~QAigRahRiGQ~k~V~VYrLvt~~TvEE~Il 1207 (1404)
||.++.+||++...|||+|||+.||+||||+.||||||||+||||..|.||++|||||||++.|+|||||+..||||.|+
T Consensus 1315 RQaLmerFNaD~RIfcfILSTrSggvGiNLtgADTVvFYDsDwNPtMDaQAQDrChRIGqtRDVHIYRLISe~TIEeniL 1394 (1958)
T KOG0391|consen 1315 RQALMERFNADRRIFCFILSTRSGGVGINLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVHIYRLISERTIEENIL 1394 (1958)
T ss_pred HHHHHHHhcCCCceEEEEEeccCCccccccccCceEEEecCCCCchhhhHHHHHHHhhcCccceEEEEeeccchHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhHHHhcCCCChHHHHHHHHhhHHHHhcC
Q 042857 1208 QLAKKKLMLDQLFVNKSGSQKEVEDILRWGTEELFND 1244 (1404)
Q Consensus 1208 q~a~~Kl~L~~~vv~~~~s~~eledilk~Ga~~Lf~~ 1244 (1404)
..+..|.+|+.+++++.....+. +-+....+||..
T Consensus 1395 kkanqKr~L~evaiqggdfTt~f--f~q~ti~dLFd~ 1429 (1958)
T KOG0391|consen 1395 KKANQKRMLDEVAIQGGDFTTAF--FKQRTIRDLFDV 1429 (1958)
T ss_pred hhhhHHHHHHHHhhccCCccHHH--HhhhhHHHHhcC
Confidence 99999999999999876532221 112233467754
No 7
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=100.00 E-value=7e-92 Score=819.55 Aligned_cols=461 Identities=42% Similarity=0.673 Sum_probs=416.6
Q ss_pred hhccCCccCCCCCCCHHHHHHHHHHHHhhccCCcEEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEeCCCChHHHHH
Q 042857 743 ALTEQPEELKGGALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLSTMPNWLA 822 (1404)
Q Consensus 743 ~l~~qP~~l~g~~L~pyQlegVnwL~~~~~~~~~~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP~Sll~nW~r 822 (1404)
....||..+.+ +|..||+.|+|||..+|.+|.|||||||||||||+|+|+++++|.......||||||+|.|+|.||..
T Consensus 556 ~tV~qPkil~c-tLKEYQlkGLnWLvnlYdqGiNGILADeMGLGKTVQsisvlAhLaE~~nIwGPFLVVtpaStL~NWaq 634 (1185)
T KOG0388|consen 556 RTVPQPKILKC-TLKEYQLKGLNWLVNLYDQGINGILADEMGLGKTVQSISVLAHLAETHNIWGPFLVVTPASTLHNWAQ 634 (1185)
T ss_pred eeccCchhhhh-hhHHHhhccHHHHHHHHHccccceehhhhccchhHHHHHHHHHHHHhccCCCceEEeehHHHHhHHHH
Confidence 34678988874 89999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHCCCCcEEEEecchhHHHHHHHhhhccCCCCccccccCCCCceEEEeeHHHHHhhhccccCCCceEEEEccccccC
Q 042857 823 EFALWAPNLNVVEYHGCAKARAIIRQYEWHASDPDNLNKKTSSYKFNVLLTTYEMILADSSHLRGVPWEVLVVDEGHRLK 902 (1404)
Q Consensus 823 Ef~kw~P~l~Vvvy~G~~~~R~~ir~~E~~~~~~~~~~~~~~~~kfdVvITTYe~l~~d~~~L~~i~w~lVIVDEAHrlK 902 (1404)
||.+|+|+++++.|.|+...|.+++.+- ++.++ ......|||+||||+++..|..+|++++|.++|+|||+-+|
T Consensus 635 EisrFlP~~k~lpywGs~~eRkiLrKfw----~rKnm--Y~rna~fhVviTSYQlvVtDeky~qkvKWQYMILDEAQAIK 708 (1185)
T KOG0388|consen 635 EISRFLPSFKVLPYWGSPSERKILRKFW----NRKNM--YRRNAPFHVVITSYQLVVTDEKYLQKVKWQYMILDEAQAIK 708 (1185)
T ss_pred HHHHhCccceeecCcCChhhhHHHHHhc----chhhh--hccCCCceEEEEeeeeeechHHHHHhhhhhheehhHHHHhh
Confidence 9999999999999999999999998752 11222 44567899999999999999999999999999999999999
Q ss_pred CCccHHHHHHhhcccccEEEEeccCCCCChHHHHHHhhhhCCCCCCChhHHHHHhccc----------cchHHHHHHHHh
Q 042857 903 NSGSKLFSLLNSFSFQHRVLLTGTPLQNNIGEMYNLLNFLQPASFPSLSSFEEKFNDL----------TTTQKVEELKKL 972 (1404)
Q Consensus 903 N~~Sk~~~~L~~l~~~~rLLLTGTPlqNnl~EL~sLL~fL~P~~f~s~~~F~~~f~d~----------~~~~~i~~L~~l 972 (1404)
.+.|.+++.|..|+++.|||||||||||+..|||+||+|+.|..|.+..+|.+||..- ...+++.+||.+
T Consensus 709 SSsS~RWKtLLsF~cRNRLLLTGTPIQNsMqELWALLHFIMPsLFDshneFseWFSKdIEshAe~~~tlneqqL~RLH~I 788 (1185)
T KOG0388|consen 709 SSSSSRWKTLLSFKCRNRLLLTGTPIQNSMQELWALLHFIMPSLFDSHNEFSEWFSKDIESHAEMNTTLNEQQLQRLHAI 788 (1185)
T ss_pred hhhhhHHHHHhhhhccceeeecCCccchHHHHHHHHHHHHhhHhhhchHHHHHHHhhhhHhHHHhcCCcCHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999742 235788999999
Q ss_pred hhhhhhhhhHhhhhhcCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHhCCCCCCCCC
Q 042857 973 VAPHMLRRLKKDAMQNIPPKTERMVPVELSSIQAEYYRAMLTKNYQILRNIGKGVAQQSMLNIVMQLRKVCNHPYLIPGT 1052 (1404)
Q Consensus 973 L~p~mLRR~K~dV~~~LPpk~e~iV~V~LS~~Qk~~Y~~il~~n~~~L~~~~kg~~~~sllnilm~LRK~cnHP~L~~~~ 1052 (1404)
|+||||||.|++|..+|..++++.|+|.||.-|+.+|+.|..... ...+.+++|+|||+||||-||...
T Consensus 789 LKPFMLRRvKkdV~sELg~Kteidv~CdLs~RQ~~lYq~ik~~iS-----------~~E~~~~vmQlrKVCNHPdLFer~ 857 (1185)
T KOG0388|consen 789 LKPFMLRRVKKDVISELGQKTEIDVYCDLSYRQKVLYQEIKRSIS-----------SMEMENLVMQLRKVCNHPDLFERL 857 (1185)
T ss_pred HhHHHHHHHHHHHHHHhccceEEEEEechhHHHHHHHHHHHHHhh-----------HHHHHHHHHHHHHhcCChHHHhhc
Confidence 999999999999999999999999999999999999998865422 233456999999999999887433
Q ss_pred CCCCC----------------------------------------------------------c----------------
Q 042857 1053 EPDSG----------------------------------------------------------S---------------- 1058 (1404)
Q Consensus 1053 e~~~~----------------------------------------------------------~---------------- 1058 (1404)
++..+ .
T Consensus 858 e~~s~L~~~V~~nl~dv~S~Grnpi~ykiP~L~~~d~le~~~fniye~i~~~~g~~~~v~Geg~~~w~~~l~~e~k~G~~ 937 (1185)
T KOG0388|consen 858 EPRSGLSLEVSDNLGDVVSFGRNPIDYKIPSLVAKDALEMFRFNIYEMIERINGLRRIVNGEGPNAWYLRLSLEFKYGGY 937 (1185)
T ss_pred CCcceeEEEcccCHHHHHhCCCCceeecchHHHHHHHHHHHHHhHHHHHHHHhhhHhhhcCCCcchhcccceeeeccCCc
Confidence 22100 0
Q ss_pred ----HHHH-----HHH----------------------------------------------------------------
Q 042857 1059 ----VEFL-----HEM---------------------------------------------------------------- 1065 (1404)
Q Consensus 1059 ----~e~l-----~~~---------------------------------------------------------------- 1065 (1404)
.+.+ ..+
T Consensus 938 ~~~n~e~~~Kavtr~ll~p~~~~~e~~~rvi~~e~~~L~~~~y~y~P~v~apPvLI~~ead~PeId~E~~~~pLn~~i~~ 1017 (1185)
T KOG0388|consen 938 VFRNVEEAGKAVTRNLLNPESSLLESMRRVIDEEAYRLQRHVYCYSPVVAAPPVLISNEADLPEIDLENRHIPLNTTIYV 1017 (1185)
T ss_pred ccccHHHHHHHHHHHhcCcccchhHHHHHHhhHHHHHhhhheeeeccccCCCCeeeecccCCCCCCccccCcccccceec
Confidence 0000 000
Q ss_pred -----HHhhhhHHHHHHHHHHHHHHcCCeEEEEecchhHHHHHHHHHhhhcCCceEEEEeCCCCHHHHHHHHHHHhcCCC
Q 042857 1066 -----RIKASAKLTLLHSMLKVLYKEGHRVLIFSQMTKLLDILEDYLNIEFGPKTYERVDGSVSVGDRQAAITRFNQDKS 1140 (1404)
Q Consensus 1066 -----~i~~SgKl~~L~kLL~kl~~~G~KVLIFSq~~~~LDiLed~L~~~f~g~~y~rLdGs~s~~eRq~~Id~Fn~~~s 1140 (1404)
.+..|||+..|+.+|++|++.|||||+|.||+.|+|+|++||..+ +|.|.|+||+.+..+|.++|..|+. ..
T Consensus 1018 Ppm~~FitdSgKL~~LDeLL~kLkaegHRvL~yfQMTkM~dl~EdYl~yr--~Y~ylRLDGSsk~~dRrd~vrDwQ~-sd 1094 (1185)
T KOG0388|consen 1018 PPMNTFITDSGKLVVLDELLPKLKAEGHRVLMYFQMTKMIDLIEDYLVYR--GYTYLRLDGSSKASDRRDVVRDWQA-SD 1094 (1185)
T ss_pred CcHHhhhccccceeeHHHHHHHhhcCCceEEehhHHHHHHHHHHHHHHhh--ccceEEecCcchhhHHHHHHhhccC-Cc
Confidence 113489999999999999999999999999999999999999966 9999999999999999999999988 78
Q ss_pred ceEEEeecccccccccccCCCEEEEEcCCCCHhHHHHHHHhhhccCCCCcEEEEEEeeCCCHHHHHHHHHHHHHhhhHHH
Q 042857 1141 RFVFLLSTRSCGLGINLATADTVIIYDSDFNPHADIQAMNRAHRIGQSKRLLVYRLVVRASVEERILQLAKKKLMLDQLF 1220 (1404)
Q Consensus 1141 ~~VfLLSTrAgG~GINL~~AdtVIi~DsdWNP~~d~QAigRahRiGQ~k~V~VYrLvt~~TvEE~Ilq~a~~Kl~L~~~v 1220 (1404)
.||||+||||||+||||++||||||||+||||..|.||++||||.||++.|+||||++++||||+|+++|.+|..+.++|
T Consensus 1095 iFvFLLSTRAGGLGINLTAADTViFYdSDWNPT~D~QAMDRAHRLGQTrdvtvyrl~~rgTvEEk~l~rA~qK~~vQq~V 1174 (1185)
T KOG0388|consen 1095 IFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTADQQAMDRAHRLGQTRDVTVYRLITRGTVEEKVLERANQKDEVQQMV 1174 (1185)
T ss_pred eEEEEEecccCcccccccccceEEEecCCCCcchhhHHHHHHHhccCccceeeeeecccccHHHHHHHHhhhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCC
Q 042857 1221 VNKS 1224 (1404)
Q Consensus 1221 v~~~ 1224 (1404)
+.+.
T Consensus 1175 m~G~ 1178 (1185)
T KOG0388|consen 1175 MHGN 1178 (1185)
T ss_pred HcCC
Confidence 8754
No 8
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=100.00 E-value=4.2e-89 Score=813.95 Aligned_cols=467 Identities=35% Similarity=0.601 Sum_probs=400.3
Q ss_pred cCCccCCCCCCCHHHHHHHHHHHHhhccCCcEEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEeCCCChHHHHHHHH
Q 042857 746 EQPEELKGGALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLSTMPNWLAEFA 825 (1404)
Q Consensus 746 ~qP~~l~g~~L~pyQlegVnwL~~~~~~~~~~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP~Sll~nW~rEf~ 825 (1404)
.-|.++. ..|+|||.+||+||+.++.++.||||+||||||||||+|+||+.+.......+|+|||||.+++.||+.||.
T Consensus 197 ~vPg~I~-~~Lf~yQreGV~WL~~L~~q~~GGILgDeMGLGKTIQiisFLaaL~~S~k~~~paLIVCP~Tii~qW~~E~~ 275 (923)
T KOG0387|consen 197 KVPGFIW-SKLFPYQREGVQWLWELYCQRAGGILGDEMGLGKTIQIISFLAALHHSGKLTKPALIVCPATIIHQWMKEFQ 275 (923)
T ss_pred cccHHHH-HHhhHHHHHHHHHHHHHHhccCCCeecccccCccchhHHHHHHHHhhcccccCceEEEccHHHHHHHHHHHH
Confidence 3454443 379999999999999999999999999999999999999999999988677799999999999999999999
Q ss_pred HHCCCCcEEEEecchhHHHHHHHhhhccCCCCccccccCCCCceEEEeeHHHHHhhhccccCCCceEEEEccccccCCCc
Q 042857 826 LWAPNLNVVEYHGCAKARAIIRQYEWHASDPDNLNKKTSSYKFNVLLTTYEMILADSSHLRGVPWEVLVVDEGHRLKNSG 905 (1404)
Q Consensus 826 kw~P~l~Vvvy~G~~~~R~~ir~~E~~~~~~~~~~~~~~~~kfdVvITTYe~l~~d~~~L~~i~w~lVIVDEAHrlKN~~ 905 (1404)
+|+|.++|++|||+...-.. ..+.-... ...+.........+|+||||+.+......+..+.|+++|+||+|+++|++
T Consensus 276 ~w~p~~rv~ilh~t~s~~r~-~~~~~~~~-~~~~L~r~~~~~~~ilitty~~~r~~~d~l~~~~W~y~ILDEGH~IrNpn 353 (923)
T KOG0387|consen 276 TWWPPFRVFILHGTGSGARY-DASHSSHK-KDKLLIRKVATDGGILITTYDGFRIQGDDLLGILWDYVILDEGHRIRNPN 353 (923)
T ss_pred HhCcceEEEEEecCCccccc-ccchhhhh-hhhhheeeecccCcEEEEehhhhcccCcccccccccEEEecCcccccCCc
Confidence 99999999999997652110 00000000 00000112234568999999999999999999999999999999999999
Q ss_pred cHHHHHHhhcccccEEEEeccCCCCChHHHHHHhhhhCCCCCCChhHHHHHhccccc---------------hHHHHHHH
Q 042857 906 SKLFSLLNSFSFQHRVLLTGTPLQNNIGEMYNLLNFLQPASFPSLSSFEEKFNDLTT---------------TQKVEELK 970 (1404)
Q Consensus 906 Sk~~~~L~~l~~~~rLLLTGTPlqNnl~EL~sLL~fL~P~~f~s~~~F~~~f~d~~~---------------~~~i~~L~ 970 (1404)
++++.+++.+++.+|++|||||||||+.|||+|+.|+.|+.+++...|.+.|..+.. ..-...|+
T Consensus 354 s~islackki~T~~RiILSGTPiQNnL~ELwsLfDFv~PG~Lgt~~~F~~~f~~pI~~GgyaNAs~~qv~~aykca~~Lr 433 (923)
T KOG0387|consen 354 SKISLACKKIRTVHRIILSGTPIQNNLTELWSLFDFVFPGKLGTLPVFQQNFEHPINRGGYANASPRQVQTAYKCAVALR 433 (923)
T ss_pred cHHHHHHHhccccceEEeeCccccchHHHHHHHhhhccCCcccchHHHHhhhhhheeccccCCCCHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999975422 12245699
Q ss_pred HhhhhhhhhhhHhhhhh-cCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHhCCCCCC
Q 042857 971 KLVAPHMLRRLKKDAMQ-NIPPKTERMVPVELSSIQAEYYRAMLTKNYQILRNIGKGVAQQSMLNIVMQLRKVCNHPYLI 1049 (1404)
Q Consensus 971 ~lL~p~mLRR~K~dV~~-~LPpk~e~iV~V~LS~~Qk~~Y~~il~~n~~~L~~~~kg~~~~sllnilm~LRK~cnHP~L~ 1049 (1404)
.++.||+|||+|.||.. .||.|.+++++|.||+.|+.+|++++.... +.....| ..+.+.-+.-||++||||-|+
T Consensus 434 ~lI~PylLRR~K~dv~~~~Lp~K~E~VlfC~LT~~QR~~Y~~fl~s~~--v~~i~ng--~~~~l~Gi~iLrkICnHPdll 509 (923)
T KOG0387|consen 434 DLISPYLLRRMKSDVKGLKLPKKEEIVLFCRLTKLQRRLYQRFLNSSE--VNKILNG--KRNCLSGIDILRKICNHPDLL 509 (923)
T ss_pred HHhHHHHHHHHHHHhhhccCCCccceEEEEeccHHHHHHHHHHhhhHH--HHHHHcC--CccceechHHHHhhcCCcccc
Confidence 99999999999999998 999999999999999999999999987521 1111111 123455677899999999999
Q ss_pred CCCC-CCCCcHHHHHHHHHhhhhHHHHHHHHHHHHHHcCCeEEEEecchhHHHHHHHHHhhhcCCceEEEEeCCCCHHHH
Q 042857 1050 PGTE-PDSGSVEFLHEMRIKASAKLTLLHSMLKVLYKEGHRVLIFSQMTKLLDILEDYLNIEFGPKTYERVDGSVSVGDR 1128 (1404)
Q Consensus 1050 ~~~e-~~~~~~e~l~~~~i~~SgKl~~L~kLL~kl~~~G~KVLIFSq~~~~LDiLed~L~~~f~g~~y~rLdGs~s~~eR 1128 (1404)
.... ......++ +..++.|||+.+|.++|..+..+|+|||+|+|...|||||+.||... .+|.|.|+||.++...|
T Consensus 510 ~~~~~~~~~~~D~--~g~~k~sGKm~vl~~ll~~W~kqg~rvllFsqs~~mLdilE~fL~~~-~~ysylRmDGtT~~~~R 586 (923)
T KOG0387|consen 510 DRRDEDEKQGPDY--EGDPKRSGKMKVLAKLLKDWKKQGDRVLLFSQSRQMLDILESFLRRA-KGYSYLRMDGTTPAALR 586 (923)
T ss_pred cCcccccccCCCc--CCChhhcchHHHHHHHHHHHhhCCCEEEEehhHHHHHHHHHHHHHhc-CCceEEEecCCCccchh
Confidence 7642 11111111 02367899999999999999999999999999999999999999842 48999999999999999
Q ss_pred HHHHHHHhcCCCceEEEeecccccccccccCCCEEEEEcCCCCHhHHHHHHHhhhccCCCCcEEEEEEeeCCCHHHHHHH
Q 042857 1129 QAAITRFNQDKSRFVFLLSTRSCGLGINLATADTVIIYDSDFNPHADIQAMNRAHRIGQSKRLLVYRLVVRASVEERILQ 1208 (1404)
Q Consensus 1129 q~~Id~Fn~~~s~~VfLLSTrAgG~GINL~~AdtVIi~DsdWNP~~d~QAigRahRiGQ~k~V~VYrLvt~~TvEE~Ilq 1208 (1404)
+.+|++||++.+.|||||+|++||+|+||+.||.||||||+|||..|.||..||+||||++.|.||||++.|||||+||.
T Consensus 587 ~~lVd~Fne~~s~~VFLLTTrvGGLGlNLTgAnRVIIfDPdWNPStD~QAreRawRiGQkkdV~VYRL~t~gTIEEkiY~ 666 (923)
T KOG0387|consen 587 QKLVDRFNEDESIFVFLLTTRVGGLGLNLTGANRVIIFDPDWNPSTDNQARERAWRIGQKKDVVVYRLMTAGTIEEKIYH 666 (923)
T ss_pred hHHHHhhcCCCceEEEEEEecccccccccccCceEEEECCCCCCccchHHHHHHHhhcCccceEEEEEecCCcHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhHHHhc
Q 042857 1209 LAKKKLMLDQLFVN 1222 (1404)
Q Consensus 1209 ~a~~Kl~L~~~vv~ 1222 (1404)
++-.|..|...++.
T Consensus 667 rQI~Kq~Ltn~il~ 680 (923)
T KOG0387|consen 667 RQIFKQFLTNRILK 680 (923)
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999888875
No 9
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=100.00 E-value=2.5e-84 Score=793.34 Aligned_cols=457 Identities=36% Similarity=0.591 Sum_probs=402.1
Q ss_pred CCCCHHHHHHHHHHHHhhccCCcEEEEcCCCchHHHHHHHHHHHHHhhcc------CCCcEEEEeCCCChHHHHHHHHHH
Q 042857 754 GALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFK------AKLPCLVLVPLSTMPNWLAEFALW 827 (1404)
Q Consensus 754 ~~L~pyQlegVnwL~~~~~~~~~~ILADEMGLGKTiqaIa~L~~L~~~~~------~~gP~LIVvP~Sll~nW~rEf~kw 827 (1404)
.+||.||.+|||||.+...-+.+|||||+||||||+|+|.+++.-..... ...|.|||||.++..+|+.|+.+|
T Consensus 974 a~LRkYQqEGVnWLaFLnky~LHGILcDDMGLGKTLQticilAsd~y~r~s~~~e~~~~PSLIVCPsTLtGHW~~E~~kf 1053 (1549)
T KOG0392|consen 974 AKLRKYQQEGVNWLAFLNKYKLHGILCDDMGLGKTLQTICILASDHYKRRSESSEFNRLPSLIVCPSTLTGHWKSEVKKF 1053 (1549)
T ss_pred HHHHHHHHhccHHHHHHHHhcccceeeccccccHHHHHHHHHHHHHHhhcccchhhccCCeEEECCchhhhHHHHHHHHh
Confidence 57999999999999999888999999999999999999999987543331 235899999999999999999999
Q ss_pred CCCCcEEEEecchhHHHHHHHhhhccCCCCccccccCCCCceEEEeeHHHHHhhhccccCCCceEEEEccccccCCCccH
Q 042857 828 APNLNVVEYHGCAKARAIIRQYEWHASDPDNLNKKTSSYKFNVLLTTYEMILADSSHLRGVPWEVLVVDEGHRLKNSGSK 907 (1404)
Q Consensus 828 ~P~l~Vvvy~G~~~~R~~ir~~E~~~~~~~~~~~~~~~~kfdVvITTYe~l~~d~~~L~~i~w~lVIVDEAHrlKN~~Sk 907 (1404)
+|-++|+.|.|.+..|..+|.. ..+.+|+||+|+.+++|..+|..+.|.|+|+||+|-+||..++
T Consensus 1054 ~pfL~v~~yvg~p~~r~~lR~q---------------~~~~~iiVtSYDv~RnD~d~l~~~~wNYcVLDEGHVikN~ktk 1118 (1549)
T KOG0392|consen 1054 FPFLKVLQYVGPPAERRELRDQ---------------YKNANIIVTSYDVVRNDVDYLIKIDWNYCVLDEGHVIKNSKTK 1118 (1549)
T ss_pred cchhhhhhhcCChHHHHHHHhh---------------ccccceEEeeHHHHHHHHHHHHhcccceEEecCcceecchHHH
Confidence 9999999999999999887752 2356899999999999999999999999999999999999999
Q ss_pred HHHHHhhcccccEEEEeccCCCCChHHHHHHhhhhCCCCCCChhHHHHHhccccc---------------hHHHHHHHHh
Q 042857 908 LFSLLNSFSFQHRVLLTGTPLQNNIGEMYNLLNFLQPASFPSLSSFEEKFNDLTT---------------TQKVEELKKL 972 (1404)
Q Consensus 908 ~~~~L~~l~~~~rLLLTGTPlqNnl~EL~sLL~fL~P~~f~s~~~F~~~f~d~~~---------------~~~i~~L~~l 972 (1404)
++++++++.+.|||+|||||+|||+.|||+|++||+|+++++...|.++|..+.- .-.++.||+.
T Consensus 1119 l~kavkqL~a~hRLILSGTPIQNnvleLWSLFdFLMPGfLGtEKqFqsrf~kpI~asRd~K~Sske~EaG~lAleaLHKq 1198 (1549)
T KOG0392|consen 1119 LTKAVKQLRANHRLILSGTPIQNNVLELWSLFDFLMPGFLGTEKQFQSRFGKPILASRDPKSSSKEQEAGVLALEALHKQ 1198 (1549)
T ss_pred HHHHHHHHhhcceEEeeCCCcccCHHHHHHHHHHhcccccCcHHHHHHHhcchhhhhcCcccchhHHHhhHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999975421 1246789999
Q ss_pred hhhhhhhhhHhhhhhcCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHhh------ccchhhHHHHHHHHHHHHHhCCC
Q 042857 973 VAPHMLRRLKKDAMQNIPPKTERMVPVELSSIQAEYYRAMLTKNYQILRNI------GKGVAQQSMLNIVMQLRKVCNHP 1046 (1404)
Q Consensus 973 L~p~mLRR~K~dV~~~LPpk~e~iV~V~LS~~Qk~~Y~~il~~n~~~L~~~------~kg~~~~sllnilm~LRK~cnHP 1046 (1404)
+-||||||+|.||+++||||..+-.+|+|+|.|+++|+.+..+........ ..+.....+++.+..|||.||||
T Consensus 1199 VLPF~LRRlKedVL~DLPpKIIQDyyCeLs~lQ~kLY~df~~~~k~~~~~~~d~~~~S~gt~~~HvFqaLqYlrKLcnHp 1278 (1549)
T KOG0392|consen 1199 VLPFLLRRLKEDVLKDLPPKIIQDYYCELSPLQKKLYRDFVKKAKQCVSSQIDGGEESLGTDKTHVFQALQYLRKLCNHP 1278 (1549)
T ss_pred HHHHHHHHHHHHHHhhCChhhhhheeeccCHHHHHHHHHHHHHhccccccccccchhccCcchHHHHHHHHHHHHhcCCc
Confidence 999999999999999999999999999999999999999988733222111 11112567889999999999999
Q ss_pred CCCCCCC-CCC-CcHHHH-----HHHHHhhhhHHHHHHHHHHHHH--------------HcCCeEEEEecchhHHHHHHH
Q 042857 1047 YLIPGTE-PDS-GSVEFL-----HEMRIKASAKLTLLHSMLKVLY--------------KEGHRVLIFSQMTKLLDILED 1105 (1404)
Q Consensus 1047 ~L~~~~e-~~~-~~~e~l-----~~~~i~~SgKl~~L~kLL~kl~--------------~~G~KVLIFSq~~~~LDiLed 1105 (1404)
.|+-... ++- .....+ .-+.+..|+|+.+|..+|...- -.|||+|||||+..|+|++++
T Consensus 1279 aLvlt~~hp~la~i~~~l~~~~~~LHdi~hspKl~AL~qLL~eCGig~~~~~~~g~~s~vsqHRiLIFcQlK~mlDlVek 1358 (1549)
T KOG0392|consen 1279 ALVLTPVHPDLAAIVSHLAHFNSSLHDIQHSPKLSALKQLLSECGIGNNSDSEVGTPSDVSQHRILIFCQLKSMLDLVEK 1358 (1549)
T ss_pred ceeeCCCcchHHHHHHHHHHhhhhHHHhhhchhHHHHHHHHHHhCCCCCCcccccCcchhccceeEEeeeHHHHHHHHHH
Confidence 9985532 111 000100 1123678999999999998762 147999999999999999986
Q ss_pred HH-hhhcCCceEEEEeCCCCHHHHHHHHHHHhcCCCceEEEeecccccccccccCCCEEEEEcCCCCHhHHHHHHHhhhc
Q 042857 1106 YL-NIEFGPKTYERVDGSVSVGDRQAAITRFNQDKSRFVFLLSTRSCGLGINLATADTVIIYDSDFNPHADIQAMNRAHR 1184 (1404)
Q Consensus 1106 ~L-~~~f~g~~y~rLdGs~s~~eRq~~Id~Fn~~~s~~VfLLSTrAgG~GINL~~AdtVIi~DsdWNP~~d~QAigRahR 1184 (1404)
-| +..++.+.|.|+||++++.+|++++.+||++++.-|+|++|.+||+|+||++||||||++-||||.+|+|||+||||
T Consensus 1359 DL~k~~mpsVtymRLDGSVpp~~R~kiV~~FN~DptIDvLlLTThVGGLGLNLTGADTVVFvEHDWNPMrDLQAMDRAHR 1438 (1549)
T KOG0392|consen 1359 DLFKKYMPSVTYMRLDGSVPPGDRQKIVERFNEDPTIDVLLLTTHVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAHR 1438 (1549)
T ss_pred HHhhhhcCceeEEEecCCCCcHHHHHHHHHhcCCCceeEEEEeeeccccccccCCCceEEEEecCCCchhhHHHHHHHHh
Confidence 65 55678899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCcEEEEEEeeCCCHHHHHHHHHHHHHhhhHHHhcCCC
Q 042857 1185 IGQSKRLLVYRLVVRASVEERILQLAKKKLMLDQLFVNKSG 1225 (1404)
Q Consensus 1185 iGQ~k~V~VYrLvt~~TvEE~Ilq~a~~Kl~L~~~vv~~~~ 1225 (1404)
|||++.|.||||||+||+||+|+.+++.||..++.|++...
T Consensus 1439 IGQKrvVNVyRlItrGTLEEKVMgLQkFKmnvAntvInqqN 1479 (1549)
T KOG0392|consen 1439 IGQKRVVNVYRLITRGTLEEKVMGLQKFKMNVANTVINQQN 1479 (1549)
T ss_pred hcCceeeeeeeehhcccHHHHHhhHHHHhhHHHHHHHhccc
Confidence 99999999999999999999999999999999999998543
No 10
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=100.00 E-value=5.7e-81 Score=761.13 Aligned_cols=532 Identities=48% Similarity=0.745 Sum_probs=471.5
Q ss_pred CCceeEEEEEEecCccccccccCCHHHHHHHHHHHHHHHHHhhCcc--------------------------cccchhhh
Q 042857 607 GKAVSYEFLVKWVGKSNIHNSWIPESQLKVLAKRKLENYKAKYGTT--------------------------VINICDER 660 (1404)
Q Consensus 607 ~~~~~~eylVKw~~~Sy~h~~Wv~e~~l~~~~~~~l~~~~~k~~~~--------------------------~~~~~~~e 660 (1404)
.....++|+|||+|.|||||.|+++.++......+..+|..+.... ..-.++++
T Consensus 128 ~~~~~re~~vk~qg~s~~~c~~~~e~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~a~~~~r~~~~~iKpe 207 (696)
T KOG0383|consen 128 NGIVEREFFVKWQGLSYWHCSWKSELLLQNPLNTLPVELQRKHDTDQKPEAEIGVTRDKGKLVPYADLEERFLLYGIKPE 207 (696)
T ss_pred ccchhhhcccccccCCccchhHHHHHHhhhhcccchHhhhhhhhcccCccccccccccCccccccccchhhhhheecccc
Confidence 3445689999999999999999999998865444444443331100 00124679
Q ss_pred ccchhhhhhhccCCCCcceeeeccCCCCCCcccccCCCchHHHhhHHHHHHHHHHHHh-hhccccCCCCCCCCCCCCcch
Q 042857 661 WKQPQRVISLRSSKDGTREAFVKWTGLPYDECTWEKLDEPALEKYSHLTDLFVQFERQ-TLKKDASEDELPRGKGDCQQS 739 (1404)
Q Consensus 661 ~~~~eRii~~r~~~~~~~eylVKW~gL~Y~~~TWE~~~~~~~~~~~~li~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 739 (1404)
|+.|+||++++....+.+.|+|||+.|+|++++|+..+ ..+..++..+..|+..... ...+ .+.. ....
T Consensus 208 ~~~i~rii~~~~s~~~~~~~~Vk~k~l~~d~~~~e~~~-~~ip~~~~~~qe~~~~~~~~~~~k-----~~~~----~~~~ 277 (696)
T KOG0383|consen 208 WMPIARIINRRSSQKGATDYLVKWKELSYDEQEWEVED-PDIPGYSSAGQEAWHHREKPTVSK-----DLKS----NTVD 277 (696)
T ss_pred ccccchhhhhhcccccceeeEeeeccCCccccCCCcCC-CCcccCcccccccccccCcccccc-----cccc----cccC
Confidence 99999999999988899999999999999999999754 3345566555555543211 0000 0000 0123
Q ss_pred hhhhhccCCccCC--CCCCCHHHHHHHHHHHHhhccCCcEEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEeCCCCh
Q 042857 740 EIVALTEQPEELK--GGALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLSTM 817 (1404)
Q Consensus 740 ~~~~l~~qP~~l~--g~~L~pyQlegVnwL~~~~~~~~~~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP~Sll 817 (1404)
....+..||.++. |+.|+|||++|+||++..|..+..+|||||||||||+|++.|+..++.+....+|+||++|.+++
T Consensus 278 ~~v~~~~qP~~l~~~~g~L~~~qleGln~L~~~ws~~~~~ilADEmgLgktVqsi~fl~sl~~~~~~~~P~Lv~ap~sT~ 357 (696)
T KOG0383|consen 278 DPVPYEDQPQFLTEPGGTLHPYQLEGLNWLRISWSPGVDAILADEMGLGKTVQSIVFLYSLPKEIHSPGPPLVVAPLSTI 357 (696)
T ss_pred CCCCcccCCccccCCCccccccchhhhhhhhcccccCCCcccchhhcCCceeeEEEEEeecccccCCCCCceeeccCccc
Confidence 4466778999986 68999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHCCCCcEEEEecchhHHHHHHHhhhccCCCCc-------cccccCCCCceEEEeeHHHHHhhhccccCCCc
Q 042857 818 PNWLAEFALWAPNLNVVEYHGCAKARAIIRQYEWHASDPDN-------LNKKTSSYKFNVLLTTYEMILADSSHLRGVPW 890 (1404)
Q Consensus 818 ~nW~rEf~kw~P~l~Vvvy~G~~~~R~~ir~~E~~~~~~~~-------~~~~~~~~kfdVvITTYe~l~~d~~~L~~i~w 890 (1404)
.||.+||..|+|+++++.|.|..+.|.++++++|.+.+... ..+.....+|+|.+++|+++..+...+..+.|
T Consensus 358 ~nwe~e~~~wap~~~vv~~~G~~k~r~iirepe~s~ed~~~~~~~~i~~~~~~s~~k~~vl~~s~~~~~~~~~il~~v~w 437 (696)
T KOG0383|consen 358 VNWEREFELWAPSFYVVPYPGTAKSRAIIREPEFSFEDSSIKSSPKISEMKTESSAKFHVLLPSYETIEIDQSILFSVQW 437 (696)
T ss_pred cCCCCchhccCCCcccccCCCCccchhhhhcccccccccccccCCccccccchhhcccccCCCchhhcccCHHHHhhhhc
Confidence 99999999999999999999999999999999999887531 12234567899999999999999999999999
Q ss_pred eEEEEccccccCCCccHHHHHHhhcccccEEEEeccCCCCChHHHHHHhhhhCCCCCCChhHHHHHhccccchHHHHHHH
Q 042857 891 EVLVVDEGHRLKNSGSKLFSLLNSFSFQHRVLLTGTPLQNNIGEMYNLLNFLQPASFPSLSSFEEKFNDLTTTQKVEELK 970 (1404)
Q Consensus 891 ~lVIVDEAHrlKN~~Sk~~~~L~~l~~~~rLLLTGTPlqNnl~EL~sLL~fL~P~~f~s~~~F~~~f~d~~~~~~i~~L~ 970 (1404)
.++|+||+||++|..++++..+..+...++++|||||+|||+.|||++|+||.|+.|++...|.+.|.++...+++..||
T Consensus 438 ~~livde~~rlkn~~s~~f~~l~~~~~~~~~lltgtPlqnn~~el~~ll~flt~~~~~~~~~f~e~~~d~~~~~~~~~l~ 517 (696)
T KOG0383|consen 438 GLLIVDEAHRLKNKQSKRFRVLTAYPIDSKLLLTGTPLQNNLEELFNLLNFLTPGRFNSLEWFLEEFHDISCEEQIKKLH 517 (696)
T ss_pred ceeEeechhhcccchhhhhhhccccccchhhhccCCcchhhhHHhhhcccccCcccccchhhhhhhcchhhHHHHHHhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhhhhhhhHhhhhhcCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHhCCCCCCC
Q 042857 971 KLVAPHMLRRLKKDAMQNIPPKTERMVPVELSSIQAEYYRAMLTKNYQILRNIGKGVAQQSMLNIVMQLRKVCNHPYLIP 1050 (1404)
Q Consensus 971 ~lL~p~mLRR~K~dV~~~LPpk~e~iV~V~LS~~Qk~~Y~~il~~n~~~L~~~~kg~~~~sllnilm~LRK~cnHP~L~~ 1050 (1404)
.++.|+||||.+.|+++.+|+|++.++++.|++.|+++|+.++++|++.+.+ |+.+.+++|++|+|||+|+|||+++
T Consensus 518 ~l~~p~~lrr~k~d~l~~~P~Kte~i~~~~~~~~Q~~~yk~~~t~n~~~l~~---~~~~~s~~n~~mel~K~~~hpy~~~ 594 (696)
T KOG0383|consen 518 LLLCPHMLRRLKLDVLKPMPLKTELIGRVELSPCQKKYYKKILTRNWQGLLA---GVHQYSLLNIVMELRKQCNHPYLSP 594 (696)
T ss_pred cccCchhhhhhhhhhccCCCccceeEEEEecCHHHHHHHHHHHcCChHHHhh---cchhHHHHHHHHHHHHhhcCcccCc
Confidence 9999999999999999999999999999999999999999999999999987 7788899999999999999999999
Q ss_pred CCCCCCCcHHHHHHHHHhhhhHHHHHHHHHHHHHHcCCeEEEEecchhHHHHHHHHHhhhcCCceEEEEeCCCCHHHHHH
Q 042857 1051 GTEPDSGSVEFLHEMRIKASAKLTLLHSMLKVLYKEGHRVLIFSQMTKLLDILEDYLNIEFGPKTYERVDGSVSVGDRQA 1130 (1404)
Q Consensus 1051 ~~e~~~~~~e~l~~~~i~~SgKl~~L~kLL~kl~~~G~KVLIFSq~~~~LDiLed~L~~~f~g~~y~rLdGs~s~~eRq~ 1130 (1404)
..++......++...++++|+|+.+|.+|+++++..||||+||+||+.+||+|++|+... + .|+|+||.++..+||+
T Consensus 595 ~~e~~~~~~~~~~~~l~k~~~k~~~l~~~~~~l~~~ghrvl~~~q~~~~ldlled~~~~~--~-~~~r~dG~~~~~~rq~ 671 (696)
T KOG0383|consen 595 LEEPLEENGEYLGSALIKASGKLTLLLKMLKKLKSSGHRVLIFSQMIHMLDLLEDYLTYE--G-KYERIDGPITGPERQA 671 (696)
T ss_pred cccccccchHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhHHHHhcc--C-cceeccCCccchhhhh
Confidence 988888888999999999999999999999999999999999999999999999999976 5 8999999999999999
Q ss_pred HHHHHhcCCC-ceEEEeeccccccc
Q 042857 1131 AITRFNQDKS-RFVFLLSTRSCGLG 1154 (1404)
Q Consensus 1131 ~Id~Fn~~~s-~~VfLLSTrAgG~G 1154 (1404)
+|++||++++ .||||+||||||+|
T Consensus 672 ai~~~n~~~~~~~cfllstra~g~g 696 (696)
T KOG0383|consen 672 AIDRFNAPGSNQFCFLLSTRAGGLG 696 (696)
T ss_pred hccccCCCCccceEEEeecccccCC
Confidence 9999998764 89999999999998
No 11
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=100.00 E-value=3.8e-72 Score=688.51 Aligned_cols=455 Identities=34% Similarity=0.506 Sum_probs=386.9
Q ss_pred CCCCCHHHHHHHHHHHHhhc------cCCcEEEEcCCCchHHHHHHHHHHHHHhhccCCC----cEEEEeCCCChHHHHH
Q 042857 753 GGALFPHQLEALNWLRKCWH------KSKNVILADEMGLGKTVSACAFISSLYCEFKAKL----PCLVLVPLSTMPNWLA 822 (1404)
Q Consensus 753 g~~L~pyQlegVnwL~~~~~------~~~~~ILADEMGLGKTiqaIa~L~~L~~~~~~~g----P~LIVvP~Sll~nW~r 822 (1404)
...|||||.+|++||..+.. ...|||+||+||+|||+|+|+||..+++.++..+ ..|||||.+++.||.+
T Consensus 236 ~~~LrPHQ~EG~~FL~knl~g~~~~~~~~GCImAd~~GlGKTlq~IsflwtlLrq~P~~~~~~~k~lVV~P~sLv~nWkk 315 (776)
T KOG0390|consen 236 KKILRPHQREGFEFLYKNLAGLIRPKNSGGCIMADEPGLGKTLQCISFIWTLLRQFPQAKPLINKPLVVAPSSLVNNWKK 315 (776)
T ss_pred hhhcCchHHHHHHHHHhhhhcccccCCCCceEeeCCCCcchHHHHHHHHHHHHHhCcCccccccccEEEccHHHHHHHHH
Confidence 35799999999999988775 3468999999999999999999999999887722 3599999999999999
Q ss_pred HHHHHCC--CCcEEEEecchhHHHHHHHhhhccCCCCccccccCCCCceEEEeeHHHHHhhhccccCCCceEEEEccccc
Q 042857 823 EFALWAP--NLNVVEYHGCAKARAIIRQYEWHASDPDNLNKKTSSYKFNVLLTTYEMILADSSHLRGVPWEVLVVDEGHR 900 (1404)
Q Consensus 823 Ef~kw~P--~l~Vvvy~G~~~~R~~ir~~E~~~~~~~~~~~~~~~~kfdVvITTYe~l~~d~~~L~~i~w~lVIVDEAHr 900 (1404)
||.+|.. .+....++|...+ .++....+.+ ........-|++.+|+++..+...+....+++||+||+|+
T Consensus 316 EF~KWl~~~~i~~l~~~~~~~~-~w~~~~sil~-------~~~~~~~~~vli~sye~~~~~~~~il~~~~glLVcDEGHr 387 (776)
T KOG0390|consen 316 EFGKWLGNHRINPLDFYSTKKS-SWIKLKSILF-------LGYKQFTTPVLIISYETASDYCRKILLIRPGLLVCDEGHR 387 (776)
T ss_pred HHHHhccccccceeeeecccch-hhhhhHHHHH-------hhhhheeEEEEeccHHHHHHHHHHHhcCCCCeEEECCCCC
Confidence 9999974 6888888887765 1221111111 0112345679999999999999999999999999999999
Q ss_pred cCCCccHHHHHHhhcccccEEEEeccCCCCChHHHHHHhhhhCCCCCCChhHHHHHhccccc--------------hHHH
Q 042857 901 LKNSGSKLFSLLNSFSFQHRVLLTGTPLQNNIGEMYNLLNFLQPASFPSLSSFEEKFNDLTT--------------TQKV 966 (1404)
Q Consensus 901 lKN~~Sk~~~~L~~l~~~~rLLLTGTPlqNnl~EL~sLL~fL~P~~f~s~~~F~~~f~d~~~--------------~~~i 966 (1404)
+||..+.++++|..+.+++||+|||||+||++.|+|++|+|+.|+.+++...|...|..+.. .+++
T Consensus 388 lkN~~s~~~kaL~~l~t~rRVLLSGTp~QNdl~EyFnlL~fvrP~~Lgs~~sf~k~~~~~i~~~~~~~~s~e~~~~~~rl 467 (776)
T KOG0390|consen 388 LKNSDSLTLKALSSLKTPRRVLLTGTPIQNDLKEYFNLLDFVRPGFLGSISSFKKKFEIPILRGRDADASEEDREREERL 467 (776)
T ss_pred ccchhhHHHHHHHhcCCCceEEeeCCcccccHHHHHHHHhhcChhhccchHHHHHHhhcccccccCCCcchhhhhhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999964321 2447
Q ss_pred HHHHHhhhhhhhhhhHhhhhhcCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHhCCC
Q 042857 967 EELKKLVAPHMLRRLKKDAMQNIPPKTERMVPVELSSIQAEYYRAMLTKNYQILRNIGKGVAQQSMLNIVMQLRKVCNHP 1046 (1404)
Q Consensus 967 ~~L~~lL~p~mLRR~K~dV~~~LPpk~e~iV~V~LS~~Qk~~Y~~il~~n~~~L~~~~kg~~~~sllnilm~LRK~cnHP 1046 (1404)
.+|..+...|++||+-....+.||++.+++|.|.+++.|+..|..++... ......+ ..+..+..|+++||||
T Consensus 468 ~eL~~~t~~fi~rrt~~il~k~LP~k~e~vv~~n~t~~Q~~~~~~l~~~~---~~~~~~~----~~l~~~~~L~k~cnhP 540 (776)
T KOG0390|consen 468 QELRELTNKFILRRTGDILLKYLPGKYEYVVFCNPTPIQKELYKKLLDSM---KMRTLKG----YALELITKLKKLCNHP 540 (776)
T ss_pred HHHHHHHHhheeecccchhhhhCCCceeEEEEeCCcHHHHHHHHHHHHHH---Hhhhhhc----chhhHHHHHHHHhcCH
Confidence 88999999999999998889999999999999999999999999998763 1111112 2567788999999999
Q ss_pred CCCCCCCCCCCc------HHHHHHH-------HHhhhhHHHHHHHHHHHHHHc-CCeEEEEecchhHHHHHHHHHhhhcC
Q 042857 1047 YLIPGTEPDSGS------VEFLHEM-------RIKASAKLTLLHSMLKVLYKE-GHRVLIFSQMTKLLDILEDYLNIEFG 1112 (1404)
Q Consensus 1047 ~L~~~~e~~~~~------~e~l~~~-------~i~~SgKl~~L~kLL~kl~~~-G~KVLIFSq~~~~LDiLed~L~~~f~ 1112 (1404)
+|+...+..... ...+... ...-|+|+..|..||....+. -.++++.++++.++|+++..+..+
T Consensus 541 ~L~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ks~kl~~L~~ll~~~~ek~~~~~v~Isny~~tldl~e~~~~~~-- 618 (776)
T KOG0390|consen 541 SLLLLCEKTEKEKAFKNPALLLDPGKLKLDAGDGSKSGKLLVLVFLLEVIREKLLVKSVLISNYTQTLDLFEQLCRWR-- 618 (776)
T ss_pred HhhcccccccccccccChHhhhcccccccccccchhhhHHHHHHHHHHHHhhhcceEEEEeccHHHHHHHHHHHHhhc--
Confidence 998633222111 1111111 123589999999999666554 357777788899999999999987
Q ss_pred CceEEEEeCCCCHHHHHHHHHHHhcCCCc-eEEEeecccccccccccCCCEEEEEcCCCCHhHHHHHHHhhhccCCCCcE
Q 042857 1113 PKTYERVDGSVSVGDRQAAITRFNQDKSR-FVFLLSTRSCGLGINLATADTVIIYDSDFNPHADIQAMNRAHRIGQSKRL 1191 (1404)
Q Consensus 1113 g~~y~rLdGs~s~~eRq~~Id~Fn~~~s~-~VfLLSTrAgG~GINL~~AdtVIi~DsdWNP~~d~QAigRahRiGQ~k~V 1191 (1404)
|+.+.||||+|+..+||.+|+.||++.+. ||||+|++|||+||||.+|++||+||++|||+++.|||+||||.||+++|
T Consensus 619 g~~~~rLdG~~~~~qRq~~vd~FN~p~~~~~vfLlSsKAgg~GinLiGAsRlil~D~dWNPa~d~QAmaR~~RdGQKk~v 698 (776)
T KOG0390|consen 619 GYEVLRLDGKTSIKQRQKLVDTFNDPESPSFVFLLSSKAGGEGLNLIGASRLILFDPDWNPAVDQQAMARAWRDGQKKPV 698 (776)
T ss_pred CceEEEEcCCCchHHHHHHHHhccCCCCCceEEEEecccccCceeecccceEEEeCCCCCchhHHHHHHHhccCCCcceE
Confidence 89999999999999999999999999886 99999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeeCCCHHHHHHHHHHHHHhhhHHHhcCC
Q 042857 1192 LVYRLVVRASVEERILQLAKKKLMLDQLFVNKS 1224 (1404)
Q Consensus 1192 ~VYrLvt~~TvEE~Ilq~a~~Kl~L~~~vv~~~ 1224 (1404)
+||||++.||+||+||+++..|..|..+|++..
T Consensus 699 ~iYrLlatGtiEEk~~qrq~~K~~lS~~v~~~~ 731 (776)
T KOG0390|consen 699 YIYRLLATGTIEEKIYQRQTHKEGLSSMVFDEE 731 (776)
T ss_pred EEEEeecCCCchHHHHHHHHHhhhhhheEEecc
Confidence 999999999999999999999999999888643
No 12
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]
Probab=100.00 E-value=1.5e-66 Score=620.15 Aligned_cols=455 Identities=30% Similarity=0.495 Sum_probs=372.6
Q ss_pred CCCCHHHHHHHHHHHHhhc---------cCCcEEEEcCCCchHHHHHHHHHHHHHhhc-cCCCcEEEEeCCCChHHHHHH
Q 042857 754 GALFPHQLEALNWLRKCWH---------KSKNVILADEMGLGKTVSACAFISSLYCEF-KAKLPCLVLVPLSTMPNWLAE 823 (1404)
Q Consensus 754 ~~L~pyQlegVnwL~~~~~---------~~~~~ILADEMGLGKTiqaIa~L~~L~~~~-~~~gP~LIVvP~Sll~nW~rE 823 (1404)
..|.|||..||.||+.+.. .|.|||||+-||||||+|+|+|+.+++... .....+|||||.+++.||.+|
T Consensus 667 ~kLKpHQv~GvqFMwd~~~eSlkr~~~~~GsGcILAHcMGLGKTlQVvtflhTvL~c~klg~ktaLvV~PlNt~~NW~~E 746 (1567)
T KOG1015|consen 667 IKLKPHQVDGVQFMWDCCCESLKRTKKSPGSGCILAHCMGLGKTLQVVTFLHTVLLCDKLGFKTALVVCPLNTALNWMNE 746 (1567)
T ss_pred hhcCcccccchhHHHHHHHHHHHhhcCCCCcchHHHHhhcccceehhhHHHHHHHHhhccCCceEEEEcchHHHHHHHHH
Confidence 3799999999999987653 478999999999999999999999876543 345689999999999999999
Q ss_pred HHHHCCCC------cEEEEec--chhHHHHHHHhhhccCCCCccccccCCCCceEEEeeHHHHHhh--------------
Q 042857 824 FALWAPNL------NVVEYHG--CAKARAIIRQYEWHASDPDNLNKKTSSYKFNVLLTTYEMILAD-------------- 881 (1404)
Q Consensus 824 f~kw~P~l------~Vvvy~G--~~~~R~~ir~~E~~~~~~~~~~~~~~~~kfdVvITTYe~l~~d-------------- 881 (1404)
|++|.+++ .|..+.. ....|. ....+|+. .-.|+|+-|++++..
T Consensus 747 FekWm~~~e~~~~leV~eL~~vkr~e~R~-~~L~~W~~-------------~ggVmIiGYdmyRnLa~gr~vk~rk~ke~ 812 (1567)
T KOG1015|consen 747 FEKWMEGLEDDEKLEVSELATVKRPEERS-YMLQRWQE-------------DGGVMIIGYDMYRNLAQGRNVKSRKLKEI 812 (1567)
T ss_pred HHHhcccccccccceeehhhhccChHHHH-HHHHHHHh-------------cCCEEEEehHHHHHHhcccchhhhHHHHH
Confidence 99999853 2322221 112221 11223321 226999999998753
Q ss_pred -hccccCCCceEEEEccccccCCCccHHHHHHhhcccccEEEEeccCCCCChHHHHHHhhhhCCCCCCChhHHHHHhccc
Q 042857 882 -SSHLRGVPWEVLVVDEGHRLKNSGSKLFSLLNSFSFQHRVLLTGTPLQNNIGEMYNLLNFLQPASFPSLSSFEEKFNDL 960 (1404)
Q Consensus 882 -~~~L~~i~w~lVIVDEAHrlKN~~Sk~~~~L~~l~~~~rLLLTGTPlqNnl~EL~sLL~fL~P~~f~s~~~F~~~f~d~ 960 (1404)
...|..-..++||+||||-|||..+.+++++..+.+.+||+||||||||||.|+|-|++|+.|+.+++..+|..+|..+
T Consensus 813 f~k~lvdpGPD~vVCDE~HiLKNeksa~Skam~~irtkRRI~LTGTPLQNNLmEY~CMVnFVKe~lLGs~~EfrNRFvNp 892 (1567)
T KOG1015|consen 813 FNKALVDPGPDFVVCDEGHILKNEKSAVSKAMNSIRTKRRIILTGTPLQNNLMEYHCMVNFVKENLLGSIKEFRNRFVNP 892 (1567)
T ss_pred HHHhccCCCCCeEEecchhhhccchHHHHHHHHHHHhheeEEeecCchhhhhHHHHHHHHhcccccccCcHHHHHhhcCc
Confidence 1234455689999999999999999999999999999999999999999999999999999999999999999999865
Q ss_pred cch---------------HHHHHHHHhhhhhhhhhhHhhhhhcCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHh-hc
Q 042857 961 TTT---------------QKVEELKKLVAPHMLRRLKKDAMQNIPPKTERMVPVELSSIQAEYYRAMLTKNYQILRN-IG 1024 (1404)
Q Consensus 961 ~~~---------------~~i~~L~~lL~p~mLRR~K~dV~~~LPpk~e~iV~V~LS~~Qk~~Y~~il~~n~~~L~~-~~ 1024 (1404)
... .....|+.+|..++-|+.-.-+.+.|||+.+++|.|.||+.|..+|..+|......-+. .+
T Consensus 893 I~nGq~~dST~~DVr~Mk~RsHILye~LkgcVqRkDy~Vltk~LPPK~eyVi~vrltelQ~~LYq~yL~h~~~~G~d~eg 972 (1567)
T KOG1015|consen 893 IQNGQCADSTMVDVRVMKKRSHILYEMLKGCVQRKDYTVLTKFLPPKHEYVIAVRLTELQCKLYQYYLDHLTGVGNDSEG 972 (1567)
T ss_pred cccCccCCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCCceeEEEEEeccHHHHHHHHHHHhhccccCCcccc
Confidence 432 22456889999999999888888999999999999999999999999999842221111 11
Q ss_pred cchhhHHHHHHHHHHHHHhCCCCCCC-----------------------CCC-----------------------CC---
Q 042857 1025 KGVAQQSMLNIVMQLRKVCNHPYLIP-----------------------GTE-----------------------PD--- 1055 (1404)
Q Consensus 1025 kg~~~~sllnilm~LRK~cnHP~L~~-----------------------~~e-----------------------~~--- 1055 (1404)
..+....|+.-+..|+++.+|||... ... ++
T Consensus 973 ~~g~~arlf~dfqmlsrIwtHP~~lqL~s~~~enkR~~seddm~~fi~D~sde~e~s~~s~d~~~~~ks~~~s~~Desss 1052 (1567)
T KOG1015|consen 973 GRGAGARLFQDFQMLSRIWTHPWCLQLDSISKENKRYFSEDDMDEFIADDSDETEMSLSSDDYTKKKKSGKKSKKDESSS 1052 (1567)
T ss_pred ccchhhhHHHHHHHHHHHhcCCCceeechhhhhhcccccccchhccccCCCccccccccccchhhccccccccccccccc
Confidence 12244578889999999999999641 000 00
Q ss_pred ----CCc-----------------------------HHHHH------------------HH-------HHhhhhHHHHHH
Q 042857 1056 ----SGS-----------------------------VEFLH------------------EM-------RIKASAKLTLLH 1077 (1404)
Q Consensus 1056 ----~~~-----------------------------~e~l~------------------~~-------~i~~SgKl~~L~ 1077 (1404)
.+. ...+. .+ .+..||||.+|.
T Consensus 1053 ~~~~~g~~ev~k~k~rk~r~~~~~~~~~~g~~~D~~l~ll~dlag~~s~~~d~ppew~kd~v~e~d~~v~~~SgKmiLLl 1132 (1567)
T KOG1015|consen 1053 GSGSDGDVEVIKVKNRKSRGGGEGNVDETGNNPDVSLKLLEDLAGSSSNPSDPPPEWYKDFVTEADAEVLEHSGKMILLL 1132 (1567)
T ss_pred ccccCCchhhhhhhhhhccccccCcccccCCCcchHHHHhhcccccccCCCCCchHhHHhhhhhhhhhhhhcCcceehHH
Confidence 000 00000 00 134699999999
Q ss_pred HHHHHHHHcCCeEEEEecchhHHHHHHHHHhhh--------------------cCCceEEEEeCCCCHHHHHHHHHHHhc
Q 042857 1078 SMLKVLYKEGHRVLIFSQMTKLLDILEDYLNIE--------------------FGPKTYERVDGSVSVGDRQAAITRFNQ 1137 (1404)
Q Consensus 1078 kLL~kl~~~G~KVLIFSq~~~~LDiLed~L~~~--------------------f~g~~y~rLdGs~s~~eRq~~Id~Fn~ 1137 (1404)
+||....+-|.|+|||||....||+|++||... ..|..|.||||++...+|+++.++||+
T Consensus 1133 eIL~mceeIGDKlLVFSQSL~SLdLIe~fLe~v~r~gk~~~d~~~~~~~eGkW~~GkDyyriDGst~s~~R~k~~~~FNd 1212 (1567)
T KOG1015|consen 1133 EILRMCEEIGDKLLVFSQSLISLDLIEDFLELVSREGKEDKDKPLIYKGEGKWLRGKDYYRLDGSTTSQSRKKWAEEFND 1212 (1567)
T ss_pred HHHHHHHHhcceeEEeecccchhHHHHHHHHhhcccCccccccccccccccceecCCceEEecCcccHHHHHHHHHHhcC
Confidence 999999999999999999999999999999632 125689999999999999999999999
Q ss_pred CCC--ceEEEeecccccccccccCCCEEEEEcCCCCHhHHHHHHHhhhccCCCCcEEEEEEeeCCCHHHHHHHHHHHHHh
Q 042857 1138 DKS--RFVFLLSTRSCGLGINLATADTVIIYDSDFNPHADIQAMNRAHRIGQSKRLLVYRLVVRASVEERILQLAKKKLM 1215 (1404)
Q Consensus 1138 ~~s--~~VfLLSTrAgG~GINL~~AdtVIi~DsdWNP~~d~QAigRahRiGQ~k~V~VYrLvt~~TvEE~Ilq~a~~Kl~ 1215 (1404)
+.+ ..+||||||||++||||.+|++|||||..|||.-|.|+|-|++|+||+++|+|||||+.||+||+||.++-.|..
T Consensus 1213 p~NlRaRl~LISTRAGsLGiNLvAANRVIIfDasWNPSyDtQSIFRvyRfGQtKPvyiYRfiAqGTmEeKIYkRQVTKqs 1292 (1567)
T KOG1015|consen 1213 PTNLRARLFLISTRAGSLGINLVAANRVIIFDASWNPSYDTQSIFRVYRFGQTKPVYIYRFIAQGTMEEKIYKRQVTKQS 1292 (1567)
T ss_pred cccceeEEEEEeeccCccccceeecceEEEEecccCCccchHHHHHHHhhcCcCceeehhhhhcccHHHHHHHHHHhHhh
Confidence 876 568999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHhc
Q 042857 1216 LDQLFVN 1222 (1404)
Q Consensus 1216 L~~~vv~ 1222 (1404)
+...|++
T Consensus 1293 ls~RVVD 1299 (1567)
T KOG1015|consen 1293 LSFRVVD 1299 (1567)
T ss_pred hhhhhhh
Confidence 9888876
No 13
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=100.00 E-value=1.6e-65 Score=667.37 Aligned_cols=461 Identities=41% Similarity=0.670 Sum_probs=406.0
Q ss_pred CCCCCCCHHHHHHHHHHH-HhhccCCcEEEEcCCCchHHHHHHHHHHHHHhhccC-CCcEEEEeCCCChHHHHHHHHHHC
Q 042857 751 LKGGALFPHQLEALNWLR-KCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKA-KLPCLVLVPLSTMPNWLAEFALWA 828 (1404)
Q Consensus 751 l~g~~L~pyQlegVnwL~-~~~~~~~~~ILADEMGLGKTiqaIa~L~~L~~~~~~-~gP~LIVvP~Sll~nW~rEf~kw~ 828 (1404)
.....|+|||++|++||. ..+..+.++||||+||||||+|+|+++.+++..... .+|+|||||.+++.||.+||.+|+
T Consensus 334 ~~~~~lr~yq~~g~~wl~~~l~~~~~~~ilaD~mglGKTiq~i~~l~~~~~~~~~~~~~~liv~p~s~~~nw~~e~~k~~ 413 (866)
T COG0553 334 DLSAELRPYQLEGVNWLSELLRSNLLGGILADDMGLGKTVQTIALLLSLLESIKVYLGPALIVVPASLLSNWKREFEKFA 413 (866)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHhccCCCcccccccchhHHHHHHHHHhhhhcccCCCCCeEEEecHHHHHHHHHHHhhhC
Confidence 344689999999999999 788899999999999999999999999986665555 579999999999999999999999
Q ss_pred CCCc-EEEEecchhH----HHHHHHhhhccCCCCccccccCCCCceEEEeeHHHHHh---hhccccCCCceEEEEccccc
Q 042857 829 PNLN-VVEYHGCAKA----RAIIRQYEWHASDPDNLNKKTSSYKFNVLLTTYEMILA---DSSHLRGVPWEVLVVDEGHR 900 (1404)
Q Consensus 829 P~l~-Vvvy~G~~~~----R~~ir~~E~~~~~~~~~~~~~~~~kfdVvITTYe~l~~---d~~~L~~i~w~lVIVDEAHr 900 (1404)
|.++ +..|+|.... +..++.+.... . ...|++++|||+.+.. +...+..+.|+++|+||||+
T Consensus 414 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~---------~-~~~~~v~itty~~l~~~~~~~~~l~~~~~~~~v~DEa~~ 483 (866)
T COG0553 414 PDLRLVLVYHGEKSELDKKREALRDLLKLH---------L-VIIFDVVITTYELLRRFLVDHGGLKKIEWDRVVLDEAHR 483 (866)
T ss_pred ccccceeeeeCCcccccHHHHHHHHHhhhc---------c-cceeeEEechHHHHHHhhhhHHHHhhceeeeeehhhHHH
Confidence 9999 9999998863 44444332100 0 2458999999999999 99999999999999999999
Q ss_pred cCCCccHHHHHHhhcccccEEEEeccCCCCChHHHHHHhh-hhCCCCCC-ChhHHHHHhccccc-----------hHHHH
Q 042857 901 LKNSGSKLFSLLNSFSFQHRVLLTGTPLQNNIGEMYNLLN-FLQPASFP-SLSSFEEKFNDLTT-----------TQKVE 967 (1404)
Q Consensus 901 lKN~~Sk~~~~L~~l~~~~rLLLTGTPlqNnl~EL~sLL~-fL~P~~f~-s~~~F~~~f~d~~~-----------~~~i~ 967 (1404)
+||..+..++++..+.+.++++|||||++|++.|||++++ |+.|+.++ +...|..+|..... ...+.
T Consensus 484 ikn~~s~~~~~l~~~~~~~~~~LtgTPlen~l~eL~sl~~~f~~p~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~ 563 (866)
T COG0553 484 IKNDQSSEGKALQFLKALNRLDLTGTPLENRLGELWSLLQEFLNPGLLGTSFAIFTRLFEKPIQAEEDIGPLEARELGIE 563 (866)
T ss_pred HhhhhhHHHHHHHHHhhcceeeCCCChHhhhHHHHHHHHHHHhCCccccchHHHHHHHHhhhhhhcccccchhhHHHHHH
Confidence 9999999999999999999999999999999999999999 99999999 56899999975421 13344
Q ss_pred HHHHhhhhhhhhhhHhh--hhhcCCCceEEEEEecCCHHHHHHHHHHHH---HHHHHHHhhccch--------hhHHHHH
Q 042857 968 ELKKLVAPHMLRRLKKD--AMQNIPPKTERMVPVELSSIQAEYYRAMLT---KNYQILRNIGKGV--------AQQSMLN 1034 (1404)
Q Consensus 968 ~L~~lL~p~mLRR~K~d--V~~~LPpk~e~iV~V~LS~~Qk~~Y~~il~---~n~~~L~~~~kg~--------~~~slln 1034 (1404)
.|+.++.||+|||++.+ +...||++.+.++.|+|+..|..+|..++. ++...+....... ....+++
T Consensus 564 ~l~~~i~~f~lrr~k~~~~v~~~Lp~k~e~~~~~~l~~~q~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 643 (866)
T COG0553 564 LLRKLLSPFILRRTKEDVEVLKELPPKIEKVLECELSEEQRELYEALLEGAEKNQQLLEDLEKADSDENRIGDSELNILA 643 (866)
T ss_pred HHHHHHHHHhhcccccchhHHHhCChhhhhhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhhHHHH
Confidence 58899999999999999 899999999999999999999999999999 6666665533222 2567899
Q ss_pred HHHHHHHHhCCCCCCCCC-CCCCC----------cHHHHHHHHHhhh-hHHHHHHHHH-HHHHHcCC--eEEEEecchhH
Q 042857 1035 IVMQLRKVCNHPYLIPGT-EPDSG----------SVEFLHEMRIKAS-AKLTLLHSML-KVLYKEGH--RVLIFSQMTKL 1099 (1404)
Q Consensus 1035 ilm~LRK~cnHP~L~~~~-e~~~~----------~~e~l~~~~i~~S-gKl~~L~kLL-~kl~~~G~--KVLIFSq~~~~ 1099 (1404)
.++.||++|+||+++... +.... .........+..| +|+..+.++| ..+...|+ |||||+||+.+
T Consensus 644 ~~~~lr~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~k~~~l~~ll~~~~~~~~~~~kvlifsq~t~~ 723 (866)
T COG0553 644 LLTRLRQICNHPALVDEGLEATFDRIVLLLREDKDFDYLKKPLIQLSKGKLQALDELLLDKLLEEGHYHKVLIFSQFTPV 723 (866)
T ss_pred HHHHHHHhccCccccccccccccchhhhhhhcccccccccchhhhccchHHHHHHHHHHHHHHhhcccccEEEEeCcHHH
Confidence 999999999999999776 22111 1111223356778 9999999999 89999999 99999999999
Q ss_pred HHHHHHHHhhhcCCceEEEEeCCCCHHHHHHHHHHHhcCCCceEEEeecccccccccccCCCEEEEEcCCCCHhHHHHHH
Q 042857 1100 LDILEDYLNIEFGPKTYERVDGSVSVGDRQAAITRFNQDKSRFVFLLSTRSCGLGINLATADTVIIYDSDFNPHADIQAM 1179 (1404)
Q Consensus 1100 LDiLed~L~~~f~g~~y~rLdGs~s~~eRq~~Id~Fn~~~s~~VfLLSTrAgG~GINL~~AdtVIi~DsdWNP~~d~QAi 1179 (1404)
+++|+.+|... ++.|.++||+++...|+.+|++|+++...+|||+|++|||+||||+.|++||+||++|||+.+.||+
T Consensus 724 l~il~~~l~~~--~~~~~~ldG~~~~~~r~~~i~~f~~~~~~~v~lls~kagg~glnLt~a~~vi~~d~~wnp~~~~Qa~ 801 (866)
T COG0553 724 LDLLEDYLKAL--GIKYVRLDGSTPAKRRQELIDRFNADEEEKVFLLSLKAGGLGLNLTGADTVILFDPWWNPAVELQAI 801 (866)
T ss_pred HHHHHHHHHhc--CCcEEEEeCCCChhhHHHHHHHhhcCCCCceEEEEecccccceeecccceEEEeccccChHHHHHHH
Confidence 99999999987 5789999999999999999999999988899999999999999999999999999999999999999
Q ss_pred HhhhccCCCCcEEEEEEeeCCCHHHHHHHHHHHHHhhhHHHhcC
Q 042857 1180 NRAHRIGQSKRLLVYRLVVRASVEERILQLAKKKLMLDQLFVNK 1223 (1404)
Q Consensus 1180 gRahRiGQ~k~V~VYrLvt~~TvEE~Ilq~a~~Kl~L~~~vv~~ 1223 (1404)
+|+|||||+++|.||+|++++|+||+|++++..|+.+...+++.
T Consensus 802 dRa~RigQ~~~v~v~r~i~~~tiEe~i~~~~~~K~~l~~~~~~~ 845 (866)
T COG0553 802 DRAHRIGQKRPVKVYRLITRGTIEEKILELQEKKQELLDSLIDA 845 (866)
T ss_pred HHHHHhcCcceeEEEEeecCCcHHHHHHHHHHHHHHHHHHHhhh
Confidence 99999999999999999999999999999999999999988874
No 14
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=100.00 E-value=5.1e-65 Score=578.75 Aligned_cols=459 Identities=28% Similarity=0.469 Sum_probs=374.9
Q ss_pred hhhccCCccCCCCCCCHHHHHHHHHHHHhhc-cCCcEEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEeCCCChHHH
Q 042857 742 VALTEQPEELKGGALFPHQLEALNWLRKCWH-KSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLSTMPNW 820 (1404)
Q Consensus 742 ~~l~~qP~~l~g~~L~pyQlegVnwL~~~~~-~~~~~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP~Sll~nW 820 (1404)
.+-.+||..+. ..|.|||++|+.|+...-. ...|||||||||+|||+|+|++++. ...+.|.|||||...+.||
T Consensus 172 ~e~aeqP~dli-i~LL~fQkE~l~Wl~~QE~Ss~~GGiLADEMGMGKTIQtIaLlla----e~~ra~tLVvaP~VAlmQW 246 (791)
T KOG1002|consen 172 AERAEQPDDLI-IPLLPFQKEGLAWLTSQEESSVAGGILADEMGMGKTIQTIALLLA----EVDRAPTLVVAPTVALMQW 246 (791)
T ss_pred hhcccCcccce-ecchhhhHHHHHHHHHhhhhhhccceehhhhccchHHHHHHHHHh----ccccCCeeEEccHHHHHHH
Confidence 34467888776 4799999999999977554 4689999999999999999999876 2344589999999999999
Q ss_pred HHHHHHHCC-CCcEEEEecchhHHHHHHHhhhccCCCCccccccCCCCceEEEeeHHHHHhh-----------------h
Q 042857 821 LAEFALWAP-NLNVVEYHGCAKARAIIRQYEWHASDPDNLNKKTSSYKFNVLLTTYEMILAD-----------------S 882 (1404)
Q Consensus 821 ~rEf~kw~P-~l~Vvvy~G~~~~R~~ir~~E~~~~~~~~~~~~~~~~kfdVvITTYe~l~~d-----------------~ 882 (1404)
..||.+++. .+++.+|||.+....+. ....+|||+|||..+-.. .
T Consensus 247 ~nEI~~~T~gslkv~~YhG~~R~~nik-----------------el~~YDvVLTty~vvEs~yRk~~~GfrrKngv~ke~ 309 (791)
T KOG1002|consen 247 KNEIERHTSGSLKVYIYHGAKRDKNIK-----------------ELMNYDVVLTTYAVVESVYRKQDYGFRRKNGVDKEK 309 (791)
T ss_pred HHHHHHhccCceEEEEEecccccCCHH-----------------HhhcCcEEEEecHHHHHHHHhccccccccCCccccc
Confidence 999999984 68999999977554321 235789999999887532 3
Q ss_pred ccccCCCceEEEEccccccCCCccHHHHHHhhcccccEEEEeccCCCCChHHHHHHhhhhCCCCCCChh-----------
Q 042857 883 SHLRGVPWEVLVVDEGHRLKNSGSKLFSLLNSFSFQHRVLLTGTPLQNNIGEMYNLLNFLQPASFPSLS----------- 951 (1404)
Q Consensus 883 ~~L~~i~w~lVIVDEAHrlKN~~Sk~~~~L~~l~~~~rLLLTGTPlqNnl~EL~sLL~fL~P~~f~s~~----------- 951 (1404)
+.|.+++|..||+||||.+|+..+...+++..+.+.+||+|||||+||++.|||+|++||+-.+|.-+-
T Consensus 310 SlLHsi~~~RiIlDEAH~IK~R~snTArAV~~L~tt~rw~LSGTPLQNrigElySLiRFL~i~Pfsyyfc~~cdc~~~~~ 389 (791)
T KOG1002|consen 310 SLLHSIKFYRIILDEAHNIKDRQSNTARAVFALETTYRWCLSGTPLQNRIGELYSLIRFLNINPFSYYFCTKCDCASLDW 389 (791)
T ss_pred chhhhceeeeeehhhhcccccccccHHHHHHhhHhhhhhhccCCcchhhHHHHHHHHHHHccCcchhhhhhhccccccce
Confidence 567889999999999999999999999999999999999999999999999999999999977763220
Q ss_pred HHHH----------------Hhccc------------cchHHHHHHHHhhhhhhhhhhHhhhhh--cCCCceEEEEEecC
Q 042857 952 SFEE----------------KFNDL------------TTTQKVEELKKLVAPHMLRRLKKDAMQ--NIPPKTERMVPVEL 1001 (1404)
Q Consensus 952 ~F~~----------------~f~d~------------~~~~~i~~L~~lL~p~mLRR~K~dV~~--~LPpk~e~iV~V~L 1001 (1404)
.|.. +|+.. .+.......|.+|..+||||+|-.-.. .|||....+-.=-+
T Consensus 390 ~ftdr~~c~~c~h~~m~h~~~~n~~mlk~IqkfG~eGpGk~af~~~h~llk~ImlrrTkl~RAdDLgLPPRiv~vRrD~f 469 (791)
T KOG1002|consen 390 KFTDRMHCDHCSHNIMQHTCFFNHFMLKPIQKFGVEGPGKEAFNNIHTLLKNIMLRRTKLERADDLGLPPRIVTVRRDFF 469 (791)
T ss_pred eecccccCCcccchhhhhhhhhcccccccchhhcccCchHHHHHHHHHHHHHHHHHHhhcccccccCCCccceeeehhhh
Confidence 0100 01000 011234467889999999999965433 58999888888889
Q ss_pred CHHHHHHHHHHHHHHHHHHHhhc-cc---hhhHHHHHHHHHHHHHhCCCCCCCCCCC----C------------CCcHH-
Q 042857 1002 SSIQAEYYRAMLTKNYQILRNIG-KG---VAQQSMLNIVMQLRKVCNHPYLIPGTEP----D------------SGSVE- 1060 (1404)
Q Consensus 1002 S~~Qk~~Y~~il~~n~~~L~~~~-kg---~~~~sllnilm~LRK~cnHP~L~~~~e~----~------------~~~~e- 1060 (1404)
+..+..+|+.++......+...- .| ..-.+++.++.+|||+..||||+..... + ....+
T Consensus 470 n~eE~D~YeSLY~dSkrkfntyieeGvvlNNYAnIF~LitRmRQ~aDHP~LVl~S~~~n~~~enk~~~~C~lc~d~aed~ 549 (791)
T KOG1002|consen 470 NEEEKDLYESLYKDSKRKFNTYIEEGVVLNNYANIFTLITRMRQAADHPDLVLYSANANLPDENKGEVECGLCHDPAEDY 549 (791)
T ss_pred hhHHHHHHHHHHHhhHHhhhhHHhhhhhhhhHHHHHHHHHHHHHhccCcceeeehhhcCCCccccCceeecccCChhhhh
Confidence 99999999999875443333221 12 1234678899999999999999743110 0 00000
Q ss_pred ----------------H--------------------------------------------HHHHHHhhhhHHHHHHHHH
Q 042857 1061 ----------------F--------------------------------------------LHEMRIKASAKLTLLHSML 1080 (1404)
Q Consensus 1061 ----------------~--------------------------------------------l~~~~i~~SgKl~~L~kLL 1080 (1404)
+ +....++.|.|+++|.+-|
T Consensus 550 i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~LsiDlse~alek~~l~~Fk~sSIlnRinm~~~qsSTKIEAL~EEl 629 (791)
T KOG1002|consen 550 IESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLSIDLSEPALEKTDLKGFKASSILNRINMDDWQSSTKIEALVEEL 629 (791)
T ss_pred HhhhhhHHHHHHHHHHHHHhhhcccCCCCccccccccccccchhhhhcchhhhhhHHHhhhcchhhhcchhHHHHHHHHH
Confidence 0 0001246799999999999
Q ss_pred HHHHHcC--CeEEEEecchhHHHHHHHHHhhhcCCceEEEEeCCCCHHHHHHHHHHHhcCCCceEEEeeccccccccccc
Q 042857 1081 KVLYKEG--HRVLIFSQMTKLLDILEDYLNIEFGPKTYERVDGSVSVGDRQAAITRFNQDKSRFVFLLSTRSCGLGINLA 1158 (1404)
Q Consensus 1081 ~kl~~~G--~KVLIFSq~~~~LDiLed~L~~~f~g~~y~rLdGs~s~~eRq~~Id~Fn~~~s~~VfLLSTrAgG~GINL~ 1158 (1404)
..+.++. -|.||||||+.|||+|.-.|... |+.+..+.|+|++..|.++|+.|.++....|||+|.+|||+.|||+
T Consensus 630 ~~l~~rd~t~KsIVFSQFTSmLDLi~~rL~ka--GfscVkL~GsMs~~ardatik~F~nd~~c~vfLvSLkAGGVALNLt 707 (791)
T KOG1002|consen 630 YFLRERDRTAKSIVFSQFTSMLDLIEWRLGKA--GFSCVKLVGSMSPAARDATIKYFKNDIDCRVFLVSLKAGGVALNLT 707 (791)
T ss_pred HHHHHcccchhhhhHHHHHHHHHHHHHHhhcc--CceEEEeccCCChHHHHHHHHHhccCCCeEEEEEEeccCceEeeec
Confidence 9998875 48899999999999999999976 8999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEEcCCCCHhHHHHHHHhhhccCCCCcEEEEEEeeCCCHHHHHHHHHHHHHhhhHHHhcCC
Q 042857 1159 TADTVIIYDSDFNPHADIQAMNRAHRIGQSKRLLVYRLVVRASVEERILQLAKKKLMLDQLFVNKS 1224 (1404)
Q Consensus 1159 ~AdtVIi~DsdWNP~~d~QAigRahRiGQ~k~V~VYrLvt~~TvEE~Ilq~a~~Kl~L~~~vv~~~ 1224 (1404)
.|..|+++||||||+...||++|+|||||.++|.|.||+..+||||+|++++++|..+.+.-++.+
T Consensus 708 eASqVFmmDPWWNpaVe~Qa~DRiHRIGQ~rPvkvvrf~iEnsiE~kIieLQeKKa~mihaTi~qd 773 (791)
T KOG1002|consen 708 EASQVFMMDPWWNPAVEWQAQDRIHRIGQYRPVKVVRFCIENSIEEKIIELQEKKANMIHATIGQD 773 (791)
T ss_pred hhceeEeecccccHHHHhhhhhhHHhhcCccceeEEEeehhccHHHHHHHHHHHHhhhhhhhcCCc
Confidence 999999999999999999999999999999999999999999999999999999999999888743
No 15
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=100.00 E-value=3e-63 Score=584.62 Aligned_cols=462 Identities=33% Similarity=0.511 Sum_probs=382.8
Q ss_pred hccCCccCCCCCCCHHHHHHHHHHHHhhc-cCCcEEEEcCCCchHHHHHHHHHHHHHhhc-------cCCCcEEEEeCCC
Q 042857 744 LTEQPEELKGGALFPHQLEALNWLRKCWH-KSKNVILADEMGLGKTVSACAFISSLYCEF-------KAKLPCLVLVPLS 815 (1404)
Q Consensus 744 l~~qP~~l~g~~L~pyQlegVnwL~~~~~-~~~~~ILADEMGLGKTiqaIa~L~~L~~~~-------~~~gP~LIVvP~S 815 (1404)
+.+.|..+. ..|+|||..|+.||+..-. .+.||||||+||||||+.+|++|.+..... ....++|||||.|
T Consensus 315 lte~P~g~~-v~LmpHQkaal~Wl~wRE~q~~~GGILaddmGLGKTlsmislil~qK~~~~~~~~~~~~a~~TLII~PaS 393 (901)
T KOG4439|consen 315 LTETPDGLK-VELMPHQKAALRWLLWRESQPPSGGILADDMGLGKTLSMISLILHQKAARKAREKKGESASKTLIICPAS 393 (901)
T ss_pred ccCCCCcce-eecchhhhhhhhhhcccccCCCCCcccccccccccchHHHHHHHHHHHHHHhhcccccccCCeEEeCcHH
Confidence 456666655 5799999999999965443 357899999999999999999998764332 2223699999999
Q ss_pred ChHHHHHHHHHHCC--CCcEEEEecchhHHHHHHHhhhccCCCCccccccCCCCceEEEeeHHHHHh----------hhc
Q 042857 816 TMPNWLAEFALWAP--NLNVVEYHGCAKARAIIRQYEWHASDPDNLNKKTSSYKFNVLLTTYEMILA----------DSS 883 (1404)
Q Consensus 816 ll~nW~rEf~kw~P--~l~Vvvy~G~~~~R~~ir~~E~~~~~~~~~~~~~~~~kfdVvITTYe~l~~----------d~~ 883 (1404)
++.||..||+.-.- -+.|++|||... |.+ . .....+||||||||..+.. ..+
T Consensus 394 li~qW~~Ev~~rl~~n~LsV~~~HG~n~-r~i-~--------------~~~L~~YDvViTTY~lva~~~~~e~~~~~~~s 457 (901)
T KOG4439|consen 394 LIHQWEAEVARRLEQNALSVYLYHGPNK-REI-S--------------AKELRKYDVVITTYNLVANKPDDELEEGKNSS 457 (901)
T ss_pred HHHHHHHHHHHHHhhcceEEEEecCCcc-ccC-C--------------HHHHhhcceEEEeeeccccCCchhhhcccCcc
Confidence 99999999997753 489999999875 221 1 1123478999999999876 246
Q ss_pred cccCCCceEEEEccccccCCCccHHHHHHhhcccccEEEEeccCCCCChHHHHHHhhhhCCCCCCChhHHHHHhccccch
Q 042857 884 HLRGVPWEVLVVDEGHRLKNSGSKLFSLLNSFSFQHRVLLTGTPLQNNIGEMYNLLNFLQPASFPSLSSFEEKFNDLTTT 963 (1404)
Q Consensus 884 ~L~~i~w~lVIVDEAHrlKN~~Sk~~~~L~~l~~~~rLLLTGTPlqNnl~EL~sLL~fL~P~~f~s~~~F~~~f~d~~~~ 963 (1404)
.|..+.|..||+||||.++|+.++...++..|.+..||+|||||+||++-|+|+||.||....|+++..|.++..... .
T Consensus 458 pL~~I~W~RVILDEAH~IrN~~tq~S~AVC~L~a~~RWclTGTPiqNn~~DvysLlrFLr~~pF~D~~~Wke~i~~~s-~ 536 (901)
T KOG4439|consen 458 PLARIAWSRVILDEAHNIRNSNTQCSKAVCKLSAKSRWCLTGTPIQNNLWDVYSLLRFLRCPPFGDLKQWKENIDNMS-K 536 (901)
T ss_pred HHHHhhHHHhhhhhhhhhcccchhHHHHHHHHhhcceeecccCccccchhHHHHHHHHhcCCCcchHHHHHHhccCcc-c
Confidence 788899999999999999999999999999999999999999999999999999999999999999999988876433 2
Q ss_pred HHHHHHHHhhhhhhhhhhHhhhhh-----cCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHhh----------cc---
Q 042857 964 QKVEELKKLVAPHMLRRLKKDAMQ-----NIPPKTERMVPVELSSIQAEYYRAMLTKNYQILRNI----------GK--- 1025 (1404)
Q Consensus 964 ~~i~~L~~lL~p~mLRR~K~dV~~-----~LPpk~e~iV~V~LS~~Qk~~Y~~il~~n~~~L~~~----------~k--- 1025 (1404)
....+|.-+.++.||||||..... .||.+...++.++|+..+...|.-+++....++..+ +.
T Consensus 537 ~g~~rlnll~K~LmLRRTKdQl~a~~klv~Lp~k~i~l~~leLs~~E~~vY~i~~~askk~~kq~L~~~e~~~~~~~~~s 616 (901)
T KOG4439|consen 537 GGANRLNLLTKSLMLRRTKDQLQANGKLVNLPEKNIELHELELSGDEAKVYQIMMEASKKLFKQFLLQREDRNNDGGYQS 616 (901)
T ss_pred cchhhhhhhhhhHHhhhhHHhhccccccccCcccceEEEEEeecchHHHHHHHHHHHHHHHHHHHHHhhhhhccccCccc
Confidence 344677778899999999998755 799999999999999999999998877655444220 00
Q ss_pred ---------------------------chhhHHHHHHHHHHHHHhCCCCCCCCCCCC------------CCcHHH--HHH
Q 042857 1026 ---------------------------GVAQQSMLNIVMQLRKVCNHPYLIPGTEPD------------SGSVEF--LHE 1064 (1404)
Q Consensus 1026 ---------------------------g~~~~sllnilm~LRK~cnHP~L~~~~e~~------------~~~~e~--l~~ 1064 (1404)
......++-+|++|||+|+||.+....... ....+. +.+
T Consensus 617 ~~~~~~~~~e~~~~~~~~pR~~aagsn~~~~s~IL~LLlrLRQ~ccH~~~~k~~ld~~~~~~~g~~~sde~~~e~~~l~e 696 (901)
T KOG4439|consen 617 RNRFIGGHDEFGNYYNIGPRFLAAGSNFEIMSHILVLLLRLRQACCHFGLLKAALDPEEFQMNGGDDSDEEQLEEDNLAE 696 (901)
T ss_pred cchhccccccccccccccchhhhcCCchhhHHHHHHHHHHHHHHhcCcchhccccCHHHhhhcCcchhhhhhhhhhHHHh
Confidence 001123678899999999999765432210 000000 000
Q ss_pred --------------------------HHHhhhhHHHHHHHHHHHH-HHcCCeEEEEecchhHHHHHHHHHhhhcCCceEE
Q 042857 1065 --------------------------MRIKASAKLTLLHSMLKVL-YKEGHRVLIFSQMTKLLDILEDYLNIEFGPKTYE 1117 (1404)
Q Consensus 1065 --------------------------~~i~~SgKl~~L~kLL~kl-~~~G~KVLIFSq~~~~LDiLed~L~~~f~g~~y~ 1117 (1404)
.....|.|+..+..++..+ .....|++|.||++.+|++++..|... |+.|.
T Consensus 697 l~k~~~T~~~~D~~ed~p~~~~~q~Fe~~r~S~Ki~~~l~~le~i~~~skeK~viVSQwtsvLniv~~hi~~~--g~~y~ 774 (901)
T KOG4439|consen 697 LEKNDETDCSDDNCEDLPTAFPDQAFEPDRPSCKIAMVLEILETILTSSKEKVVIVSQWTSVLNIVRKHIQKG--GHIYT 774 (901)
T ss_pred hhhcccccccccccccccccchhhhcccccchhHHHHHHHHHHHHhhcccceeeehhHHHHHHHHHHHHHhhC--Ceeee
Confidence 0124689999999999888 556889999999999999999999975 89999
Q ss_pred EEeCCCCHHHHHHHHHHHhcCCC-ceEEEeecccccccccccCCCEEEEEcCCCCHhHHHHHHHhhhccCCCCcEEEEEE
Q 042857 1118 RVDGSVSVGDRQAAITRFNQDKS-RFVFLLSTRSCGLGINLATADTVIIYDSDFNPHADIQAMNRAHRIGQSKRLLVYRL 1196 (1404)
Q Consensus 1118 rLdGs~s~~eRq~~Id~Fn~~~s-~~VfLLSTrAgG~GINL~~AdtVIi~DsdWNP~~d~QAigRahRiGQ~k~V~VYrL 1196 (1404)
.++|.+...+|+.+|+.||.... ..|+|||..|||+||||+.|+++|++|..|||+...||.+|++|+||+|.|+||||
T Consensus 775 si~Gqv~vK~Rq~iv~~FN~~k~~~rVmLlSLtAGGVGLNL~GaNHlilvDlHWNPaLEqQAcDRIYR~GQkK~V~IhR~ 854 (901)
T KOG4439|consen 775 SITGQVLVKDRQEIVDEFNQEKGGARVMLLSLTAGGVGLNLIGANHLILVDLHWNPALEQQACDRIYRMGQKKDVFIHRL 854 (901)
T ss_pred eecCccchhHHHHHHHHHHhccCCceEEEEEEccCcceeeecccceEEEEecccCHHHHHHHHHHHHHhcccCceEEEEE
Confidence 99999999999999999998766 78999999999999999999999999999999999999999999999999999999
Q ss_pred eeCCCHHHHHHHHHHHHHhhhHHHhcCCC
Q 042857 1197 VVRASVEERILQLAKKKLMLDQLFVNKSG 1225 (1404)
Q Consensus 1197 vt~~TvEE~Ilq~a~~Kl~L~~~vv~~~~ 1225 (1404)
++.||||++|..++..|+.++..|+.++.
T Consensus 855 ~~~gTvEqrV~~LQdkKldlA~~VL~G~~ 883 (901)
T KOG4439|consen 855 MCKGTVEQRVKSLQDKKLDLAKGVLTGSA 883 (901)
T ss_pred EecCcHHHHHHHHHHHHHHHHhhhccCcc
Confidence 99999999999999999999999987543
No 16
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=100.00 E-value=1.1e-55 Score=504.43 Aligned_cols=408 Identities=24% Similarity=0.371 Sum_probs=330.3
Q ss_pred CCCHHHHHHHHHHHHhhccCCcEEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEeCCCChHHHHHHHHHHCCCCcE-
Q 042857 755 ALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLSTMPNWLAEFALWAPNLNV- 833 (1404)
Q Consensus 755 ~L~pyQlegVnwL~~~~~~~~~~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP~Sll~nW~rEf~kw~P~l~V- 833 (1404)
.|.|||++||+|.+. +|+++|||||||||||+|||++..+++. .||.|||||.++...|..++.+|+|....
T Consensus 198 ~LlPFQreGv~faL~---RgGR~llADeMGLGKTiQAlaIA~yyra----EwplliVcPAsvrftWa~al~r~lps~~pi 270 (689)
T KOG1000|consen 198 RLLPFQREGVIFALE---RGGRILLADEMGLGKTIQALAIARYYRA----EWPLLIVCPASVRFTWAKALNRFLPSIHPI 270 (689)
T ss_pred hhCchhhhhHHHHHh---cCCeEEEecccccchHHHHHHHHHHHhh----cCcEEEEecHHHhHHHHHHHHHhcccccce
Confidence 599999999998766 6899999999999999999999987754 57999999999999999999999997654
Q ss_pred EEEecchhHHHHHHHhhhccCCCCccccccCCCCceEEEeeHHHHHhhhccccCCCceEEEEccccccCCCccHHHHHHh
Q 042857 834 VEYHGCAKARAIIRQYEWHASDPDNLNKKTSSYKFNVLLTTYEMILADSSHLRGVPWEVLVVDEGHRLKNSGSKLFSLLN 913 (1404)
Q Consensus 834 vvy~G~~~~R~~ir~~E~~~~~~~~~~~~~~~~kfdVvITTYe~l~~d~~~L~~i~w~lVIVDEAHrlKN~~Sk~~~~L~ 913 (1404)
.+..+..+- . ..-..-.-|.|+||+++......|..-+|.+||+||+|.||+..++..+++.
T Consensus 271 ~vv~~~~D~----------------~--~~~~t~~~v~ivSye~ls~l~~~l~~~~~~vvI~DEsH~Lk~sktkr~Ka~~ 332 (689)
T KOG1000|consen 271 FVVDKSSDP----------------L--PDVCTSNTVAIVSYEQLSLLHDILKKEKYRVVIFDESHMLKDSKTKRTKAAT 332 (689)
T ss_pred EEEecccCC----------------c--cccccCCeEEEEEHHHHHHHHHHHhcccceEEEEechhhhhccchhhhhhhh
Confidence 222222110 0 0001123589999999999999999999999999999999999999988887
Q ss_pred hc--ccccEEEEeccCCCCChHHHHHHhhhhCCCCCCChhHHHHHhcc---------ccchHHHHHHHHhhhh-hhhhhh
Q 042857 914 SF--SFQHRVLLTGTPLQNNIGEMYNLLNFLQPASFPSLSSFEEKFND---------LTTTQKVEELKKLVAP-HMLRRL 981 (1404)
Q Consensus 914 ~l--~~~~rLLLTGTPlqNnl~EL~sLL~fL~P~~f~s~~~F~~~f~d---------~~~~~~i~~L~~lL~p-~mLRR~ 981 (1404)
.+ ...|.|||||||--.++.|||.++..+++..|+++.+|-..|++ +....+..+|+.+|.. .|+||+
T Consensus 333 dllk~akhvILLSGTPavSRP~elytqi~avd~tlfp~f~efa~rYCd~k~vr~~~Dykg~tnl~EL~~lL~k~lMIRRl 412 (689)
T KOG1000|consen 333 DLLKVAKHVILLSGTPAVSRPSELYTQIRAVDHTLFPNFHEFAIRYCDGKQVRFCFDYKGCTNLEELAALLFKRLMIRRL 412 (689)
T ss_pred hHHHHhhheEEecCCcccCCchhhhhhhhhhcccccccHHHHHHHhcCccccceeeecCCCCCHHHHHHHHHHHHHHHHH
Confidence 76 47899999999999999999999999999999999999999986 3445678899988864 599999
Q ss_pred HhhhhhcCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCcHHH
Q 042857 982 KKDAMQNIPPKTERMVPVELSSIQAEYYRAMLTKNYQILRNIGKGVAQQSMLNIVMQLRKVCNHPYLIPGTEPDSGSVEF 1061 (1404)
Q Consensus 982 K~dV~~~LPpk~e~iV~V~LS~~Qk~~Y~~il~~n~~~L~~~~kg~~~~sllnilm~LRK~cnHP~L~~~~e~~~~~~e~ 1061 (1404)
|.+|+.+||||...+ .+....-+-..-+++......--. .......-...++..++
T Consensus 413 K~dvL~qLPpKrr~V-v~~~~gr~da~~~~lv~~a~~~t~---~~~~e~~~~~l~l~y~~-------------------- 468 (689)
T KOG1000|consen 413 KADVLKQLPPKRREV-VYVSGGRIDARMDDLVKAAADYTK---VNSMERKHESLLLFYSL-------------------- 468 (689)
T ss_pred HHHHHhhCCccceEE-EEEcCCccchHHHHHHHHhhhcch---hhhhhhhhHHHHHHHHH--------------------
Confidence 999999999995444 444454444444444433222000 00000111111111111
Q ss_pred HHHHHHhhhhHHHHHHHHHHH----HHHcCCeEEEEecchhHHHHHHHHHhhhcCCceEEEEeCCCCHHHHHHHHHHHhc
Q 042857 1062 LHEMRIKASAKLTLLHSMLKV----LYKEGHRVLIFSQMTKLLDILEDYLNIEFGPKTYERVDGSVSVGDRQAAITRFNQ 1137 (1404)
Q Consensus 1062 l~~~~i~~SgKl~~L~kLL~k----l~~~G~KVLIFSq~~~~LDiLed~L~~~f~g~~y~rLdGs~s~~eRq~~Id~Fn~ 1137 (1404)
..-.|+..+.+.|.. .-+.+.|+|||+.+..+||-|+.++..+ ++.+.||||+++..+|+.+++.|+.
T Consensus 469 ------tgiaK~~av~eyi~~~~~l~d~~~~KflVFaHH~~vLd~Iq~~~~~r--~vg~IRIDGst~s~~R~ll~qsFQ~ 540 (689)
T KOG1000|consen 469 ------TGIAKAAAVCEYILENYFLPDAPPRKFLVFAHHQIVLDTIQVEVNKR--KVGSIRIDGSTPSHRRTLLCQSFQT 540 (689)
T ss_pred ------hcccccHHHHHHHHhCcccccCCCceEEEEehhHHHHHHHHHHHHHc--CCCeEEecCCCCchhHHHHHHHhcc
Confidence 123455555555554 3456789999999999999999999987 7889999999999999999999999
Q ss_pred CCCceEEEeecccccccccccCCCEEEEEcCCCCHhHHHHHHHhhhccCCCCcEEEEEEeeCCCHHHHHHHHHHHHHhhh
Q 042857 1138 DKSRFVFLLSTRSCGLGINLATADTVIIYDSDFNPHADIQAMNRAHRIGQSKRLLVYRLVVRASVEERILQLAKKKLMLD 1217 (1404)
Q Consensus 1138 ~~s~~VfLLSTrAgG~GINL~~AdtVIi~DsdWNP~~d~QAigRahRiGQ~k~V~VYrLvt~~TvEE~Ilq~a~~Kl~L~ 1217 (1404)
.+...|-+||..|+|+||+|++|+.|+|.+..|||...+||.+|+||+||+..|.||+|++++|+||.+|....+|+...
T Consensus 541 seev~VAvlsItA~gvGLt~tAa~~VVFaEL~wnPgvLlQAEDRaHRiGQkssV~v~ylvAKgT~Ddy~Wp~l~~KL~vl 620 (689)
T KOG1000|consen 541 SEEVRVAVLSITAAGVGLTLTAASVVVFAELHWNPGVLLQAEDRAHRIGQKSSVFVQYLVAKGTADDYMWPMLQQKLDVL 620 (689)
T ss_pred ccceEEEEEEEeecccceeeeccceEEEEEecCCCceEEechhhhhhccccceeeEEEEEecCchHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998654
Q ss_pred HH
Q 042857 1218 QL 1219 (1404)
Q Consensus 1218 ~~ 1219 (1404)
..
T Consensus 621 ~s 622 (689)
T KOG1000|consen 621 GS 622 (689)
T ss_pred hh
Confidence 33
No 17
>KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only]
Probab=100.00 E-value=2.2e-54 Score=507.91 Aligned_cols=462 Identities=32% Similarity=0.518 Sum_probs=366.0
Q ss_pred CCCHHHHHHHHHHHHhh---------ccCCcEEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEeCCCChHHHHHHHH
Q 042857 755 ALFPHQLEALNWLRKCW---------HKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLSTMPNWLAEFA 825 (1404)
Q Consensus 755 ~L~pyQlegVnwL~~~~---------~~~~~~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP~Sll~nW~rEf~ 825 (1404)
.|.|||+-|+.||+.+. ..|-|||||+.||||||+|+|+|+..+++.... +.+|+|+|-.+|.||..||.
T Consensus 254 v~kPHQiGGiRFlYDN~iESl~rykkSsGFGCILAHSMGLGKTlQVisF~diflRhT~A-KtVL~ivPiNTlQNWlsEfn 332 (1387)
T KOG1016|consen 254 VLKPHQIGGIRFLYDNTIESLGRYKKSSGFGCILAHSMGLGKTLQVISFSDIFLRHTKA-KTVLVIVPINTLQNWLSEFN 332 (1387)
T ss_pred hcCccccCcEEEehhhHHHHHhhccccCCcceeeeeccccCceeEEeehhHHHhhcCcc-ceEEEEEehHHHHHHHHHhh
Confidence 58999999999986533 346789999999999999999999988866554 48999999999999999999
Q ss_pred HHCCC-----------CcEEEEecchhH---HH-HHHHhhhccCCCCccccccCCCCceEEEeeHHHHHhh---------
Q 042857 826 LWAPN-----------LNVVEYHGCAKA---RA-IIRQYEWHASDPDNLNKKTSSYKFNVLLTTYEMILAD--------- 881 (1404)
Q Consensus 826 kw~P~-----------l~Vvvy~G~~~~---R~-~ir~~E~~~~~~~~~~~~~~~~kfdVvITTYe~l~~d--------- 881 (1404)
.|.|. +.|.++....+. |. +|.+ |. ..-.|+++.|++++-.
T Consensus 333 mWiP~y~sD~~vrpR~F~vf~LnD~~KT~~~Rakvi~~--Wv-------------~~GGVlLvGYemfRLL~lk~~~~~g 397 (1387)
T KOG1016|consen 333 MWIPKYFSDTGVRPRSFEVFLLNDGVKTFDQRAKVIEQ--WV-------------QTGGVLLVGYEMFRLLILKTLPKKG 397 (1387)
T ss_pred hhcCCCcccCCCccceeEEEEecCchhhHHHHHHHHHH--Hh-------------ccCCEEEehHHHHHHHHHhcccccC
Confidence 99985 234444332222 21 1221 11 1335899999987522
Q ss_pred -----------------------------hccccCCCceEEEEccccccCCCccHHHHHHhhcccccEEEEeccCCCCCh
Q 042857 882 -----------------------------SSHLRGVPWEVLVVDEGHRLKNSGSKLFSLLNSFSFQHRVLLTGTPLQNNI 932 (1404)
Q Consensus 882 -----------------------------~~~L~~i~w~lVIVDEAHrlKN~~Sk~~~~L~~l~~~~rLLLTGTPlqNnl 932 (1404)
...|-.-..++||+||+||+||..+.++.+|..+++++|+.|||-|+||||
T Consensus 398 rpkkt~kr~~~~~i~~d~eD~~qe~~~li~~AL~~PGPDlVICDEGHrIKN~~A~iS~aLk~IrtrRRiVLTGYPLQNNL 477 (1387)
T KOG1016|consen 398 RPKKTLKRISSGFIKDDSEDQRQEAYSLIRSALLEPGPDLVICDEGHRIKNITAEISMALKAIRTRRRIVLTGYPLQNNL 477 (1387)
T ss_pred CccccccccCCcccCCchhhhHHHHHHHHHHHhcCCCCCeEEecCCceeccchHHHHHHHHHhhhceeEEEeccccccch
Confidence 011223346899999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhCCCCCCChhHHHHHhccccch---------------HHHHHHHHhhhhhhhhhhHhhhhhcCCCceEEEE
Q 042857 933 GEMYNLLNFLQPASFPSLSSFEEKFNDLTTT---------------QKVEELKKLVAPHMLRRLKKDAMQNIPPKTERMV 997 (1404)
Q Consensus 933 ~EL~sLL~fL~P~~f~s~~~F~~~f~d~~~~---------------~~i~~L~~lL~p~mLRR~K~dV~~~LPpk~e~iV 997 (1404)
.|+|-|+.|+.|+.+++..+|...|..+... ....-||.+|..|+-||+-.-+.+-||.+.|+++
T Consensus 478 lEYwCMVDFVRP~yLGTR~eF~nmFErPI~NGQCvDStPdDvklmryRtHVLhsLl~GFVQRR~HtvLk~~LP~k~EyVi 557 (1387)
T KOG1016|consen 478 LEYWCMVDFVRPKYLGTRKEFINMFERPIKNGQCVDSTPDDVKLMRYRTHVLHSLLKGFVQRRTHTVLKKILPEKKEYVI 557 (1387)
T ss_pred HHHhhhheeccccccchHHHHHHHhhccccCCccccCChhHHHHHHHHHHHHHHHHHHHHHhcchhhHhhhcccccceEE
Confidence 9999999999999999999999999754321 2345689999999999998887788999999999
Q ss_pred EecCCHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHh---CCCCCC-------------------------
Q 042857 998 PVELSSIQAEYYRAMLTKNYQILRNIGKGVAQQSMLNIVMQLRKVC---NHPYLI------------------------- 1049 (1404)
Q Consensus 998 ~V~LS~~Qk~~Y~~il~~n~~~L~~~~kg~~~~sllnilm~LRK~c---nHP~L~------------------------- 1049 (1404)
.|.+|..|+++|+.++......+... + ...+|-|+.+.-|| |||-++
T Consensus 558 Lvr~s~iQR~LY~~Fm~d~~r~~~~~--~---~~~~NPLkAF~vCcKIWNHPDVLY~~l~k~~~a~e~dl~vee~~~ag~ 632 (1387)
T KOG1016|consen 558 LVRKSQIQRQLYRNFMLDAKREIAAN--N---DAVFNPLKAFSVCCKIWNHPDVLYRLLEKKKRAEEDDLRVEEMKFAGL 632 (1387)
T ss_pred EEeHHHHHHHHHHHHHHHHHHhhccc--c---ccccChHHHHHHHHHhcCChHHHHHHHHHhhhhhhhhhhHHHHhhhcc
Confidence 99999999999999986544322111 1 11233344443333 676432
Q ss_pred ---------CCCCCCC---------------------------------CcHHHHHH-------HHHhhhhHHHHHHHHH
Q 042857 1050 ---------PGTEPDS---------------------------------GSVEFLHE-------MRIKASAKLTLLHSML 1080 (1404)
Q Consensus 1050 ---------~~~e~~~---------------------------------~~~e~l~~-------~~i~~SgKl~~L~kLL 1080 (1404)
.+..+.. ...++..+ -.+..+.|+.++.+++
T Consensus 633 ~~~~~P~~~~~~~~s~~laSs~~k~~n~t~kp~~s~~~p~f~ee~~e~~~y~~w~~el~~nYq~gvLen~pk~V~~~~~~ 712 (1387)
T KOG1016|consen 633 QQQQSPFNSIPSNPSTPLASSTSKSANKTKKPRGSKKAPKFDEEDEEVEKYSDWTFELFENYQEGVLENGPKIVISLEIL 712 (1387)
T ss_pred cccCCCCCCCCCCCCCcccchhhhhhcccCCcccCcCCCCcccccccccchhhHHHHHHhhhhcccccCCCceEEEEeee
Confidence 0000000 00011111 1234578888888888
Q ss_pred HHHHHcCCeEEEEecchhHHHHHHHHHhhhc----------------CCceEEEEeCCCCHHHHHHHHHHHhcCCC-ceE
Q 042857 1081 KVLYKEGHRVLIFSQMTKLLDILEDYLNIEF----------------GPKTYERVDGSVSVGDRQAAITRFNQDKS-RFV 1143 (1404)
Q Consensus 1081 ~kl~~~G~KVLIFSq~~~~LDiLed~L~~~f----------------~g~~y~rLdGs~s~~eRq~~Id~Fn~~~s-~~V 1143 (1404)
.+-..-|.++|||||....||.|+.+|..+- ....|.|+||.++..+|.++|++||...+ ...
T Consensus 713 des~~~g~kil~fSq~l~~Ld~ieeil~krq~pc~~gdnG~~aqkW~~n~sy~rldG~t~a~~rekLinqfN~e~~lsWl 792 (1387)
T KOG1016|consen 713 DESTQIGEKILIFSQNLTALDMIEEILKKRQIPCKDGDNGCPAQKWEKNRSYLRLDGTTSAADREKLINQFNSEPGLSWL 792 (1387)
T ss_pred ccccccCceEEEeecchhHHHHHHHHHhcccccCCCCCCCCchhhhhhccceecccCCcccchHHHHHHhccCCCCceee
Confidence 8888889999999999999999999996541 13578999999999999999999998776 469
Q ss_pred EEeecccccccccccCCCEEEEEcCCCCHhHHHHHHHhhhccCCCCcEEEEEEeeCCCHHHHHHHHHHHHHhhhHHHhcC
Q 042857 1144 FLLSTRSCGLGINLATADTVIIYDSDFNPHADIQAMNRAHRIGQSKRLLVYRLVVRASVEERILQLAKKKLMLDQLFVNK 1223 (1404)
Q Consensus 1144 fLLSTrAgG~GINL~~AdtVIi~DsdWNP~~d~QAigRahRiGQ~k~V~VYrLvt~~TvEE~Ilq~a~~Kl~L~~~vv~~ 1223 (1404)
|||||+||..||||..|+.+||||..|||..+.||..|++|.||+|+++|||||+.+++|.+||.++-.|..|...|++.
T Consensus 793 fllstrag~lGinLIsanr~~ifda~wnpchdaqavcRvyrYGQ~KpcfvYRlVmD~~lEkkIydRQIsKqGmsdRvVDd 872 (1387)
T KOG1016|consen 793 FLLSTRAGSLGINLISANRCIIFDACWNPCHDAQAVCRVYRYGQQKPCFVYRLVMDNSLEKKIYDRQISKQGMSDRVVDD 872 (1387)
T ss_pred eeehhccccccceeeccceEEEEEeecCccccchhhhhhhhhcCcCceeEEeehhhhhhHHHHHHHHHhhccchhhhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988864
Q ss_pred -----CCChHHHHHHHHhh
Q 042857 1224 -----SGSQKEVEDILRWG 1237 (1404)
Q Consensus 1224 -----~~s~~eledilk~G 1237 (1404)
..++++++.||.+-
T Consensus 873 ~np~an~s~Ke~enLl~~~ 891 (1387)
T KOG1016|consen 873 ANPDANISQKELENLLMYD 891 (1387)
T ss_pred cCccccccHHHHHHHhhhh
Confidence 34788999988653
No 18
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=100.00 E-value=3.8e-52 Score=532.16 Aligned_cols=416 Identities=22% Similarity=0.304 Sum_probs=320.1
Q ss_pred CCCCHHHHHHHHHHHHhhccCCcEEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEeCCCChHHHHHHHHHHCCCCcE
Q 042857 754 GALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLSTMPNWLAEFALWAPNLNV 833 (1404)
Q Consensus 754 ~~L~pyQlegVnwL~~~~~~~~~~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP~Sll~nW~rEf~kw~P~l~V 833 (1404)
..|.|||++.+.++... ...++|||||||||||++|++++..++..+ ..+|+|||||.+++.||..|+.+|+ ++.+
T Consensus 151 ~~l~pHQl~~~~~vl~~--~~~R~LLADEvGLGKTIeAglil~~l~~~g-~~~rvLIVvP~sL~~QW~~El~~kF-~l~~ 226 (956)
T PRK04914 151 ASLIPHQLYIAHEVGRR--HAPRVLLADEVGLGKTIEAGMIIHQQLLTG-RAERVLILVPETLQHQWLVEMLRRF-NLRF 226 (956)
T ss_pred CCCCHHHHHHHHHHhhc--cCCCEEEEeCCcCcHHHHHHHHHHHHHHcC-CCCcEEEEcCHHHHHHHHHHHHHHh-CCCe
Confidence 46999999999887653 367899999999999999999998887543 4469999999999999999999888 6777
Q ss_pred EEEecchhHHHHHHHhhhccCCCCccccccCCCCceEEEeeHHHHHhhh---ccccCCCceEEEEccccccCCC---ccH
Q 042857 834 VEYHGCAKARAIIRQYEWHASDPDNLNKKTSSYKFNVLLTTYEMILADS---SHLRGVPWEVLVVDEGHRLKNS---GSK 907 (1404)
Q Consensus 834 vvy~G~~~~R~~ir~~E~~~~~~~~~~~~~~~~kfdVvITTYe~l~~d~---~~L~~i~w~lVIVDEAHrlKN~---~Sk 907 (1404)
.+|.+..-... .. +. ......++++|+||+.+..+. ..+....|++|||||||++++. .++
T Consensus 227 ~i~~~~~~~~~-------~~-~~-----~~pf~~~~~vI~S~~~l~~~~~~~~~l~~~~wdlvIvDEAH~lk~~~~~~s~ 293 (956)
T PRK04914 227 SLFDEERYAEA-------QH-DA-----DNPFETEQLVICSLDFLRRNKQRLEQALAAEWDLLVVDEAHHLVWSEEAPSR 293 (956)
T ss_pred EEEcCcchhhh-------cc-cc-----cCccccCcEEEEEHHHhhhCHHHHHHHhhcCCCEEEEechhhhccCCCCcCH
Confidence 77766432210 00 00 012235789999999998754 4566789999999999999953 567
Q ss_pred HHHHHhhc--ccccEEEEeccCCCCChHHHHHHhhhhCCCCCCChhHHHHHhcccc---------------chHHHHHHH
Q 042857 908 LFSLLNSF--SFQHRVLLTGTPLQNNIGEMYNLLNFLQPASFPSLSSFEEKFNDLT---------------TTQKVEELK 970 (1404)
Q Consensus 908 ~~~~L~~l--~~~~rLLLTGTPlqNnl~EL~sLL~fL~P~~f~s~~~F~~~f~d~~---------------~~~~i~~L~ 970 (1404)
.++.+..+ .++++|+|||||+||++.|+|++|+||+|+.|+++..|..++.... .......|.
T Consensus 294 ~y~~v~~La~~~~~~LLLTATP~q~~~~e~falL~lLdP~~f~~~~~F~~e~~~~~~~a~~v~~l~~~~~~~~~~~~~l~ 373 (956)
T PRK04914 294 EYQVVEQLAEVIPGVLLLTATPEQLGQESHFARLRLLDPDRFHDYEAFVEEQQQYRPVADAVQALLAGEKLSDDALNALG 373 (956)
T ss_pred HHHHHHHHhhccCCEEEEEcCcccCCcHHHHHhhhhhCCCcCCCHHHHHHHHHhhHHHHHHHHHHhcCCcCCHHHHHHHH
Confidence 78888888 4779999999999999999999999999999999999987543210 011111111
Q ss_pred Hh------------------------------------hhhhhhhhhHhhhhhcCCCceEEEEEecCCHHHHHHHHHHHH
Q 042857 971 KL------------------------------------VAPHMLRRLKKDAMQNIPPKTERMVPVELSSIQAEYYRAMLT 1014 (1404)
Q Consensus 971 ~l------------------------------------L~p~mLRR~K~dV~~~LPpk~e~iV~V~LS~~Qk~~Y~~il~ 1014 (1404)
.+ ..++|+|++++++. .+|++..+.+.+++.+.....+....
T Consensus 374 ~ll~~~~~~~l~~~~~~~~~~~~~~~~~~i~~L~d~hg~~rvm~RntR~~v~-~fp~R~~~~~~l~~~~~y~~~~~~~~- 451 (956)
T PRK04914 374 ELLGEQDIEPLLQAANSDSEEAQAARQELISELLDRHGTGRVLFRNTRAAVK-GFPKRELHPIPLPLPEQYQTAIKVSL- 451 (956)
T ss_pred HHhcccchhHHHhhhcccccccHHHHHHHHHHHHhhcCcceEEEeccHHhhc-CCCcCceeEeecCCCHHHHHHHHHhH-
Confidence 11 12568888888865 68999999999999764322222100
Q ss_pred HHHHHHHhhccchhhHHHHHHHHHHHHHhCCCC-CCCCCCCCCCcHHHHHHHHHhhhhHHHHHHHHHHHHHHcCCeEEEE
Q 042857 1015 KNYQILRNIGKGVAQQSMLNIVMQLRKVCNHPY-LIPGTEPDSGSVEFLHEMRIKASAKLTLLHSMLKVLYKEGHRVLIF 1093 (1404)
Q Consensus 1015 ~n~~~L~~~~kg~~~~sllnilm~LRK~cnHP~-L~~~~e~~~~~~e~l~~~~i~~SgKl~~L~kLL~kl~~~G~KVLIF 1093 (1404)
. ..++++ .+|- ++..... ....+..++|+..|.++|..+ .+.|||||
T Consensus 452 --~-------------------~~~~~~-l~pe~~~~~~~~--------~~~~~~~d~Ki~~L~~~L~~~--~~~KvLVF 499 (956)
T PRK04914 452 --E-------------------ARARDM-LYPEQIYQEFED--------NATWWNFDPRVEWLIDFLKSH--RSEKVLVI 499 (956)
T ss_pred --H-------------------HHHHhh-cCHHHHHHHHhh--------hhhccccCHHHHHHHHHHHhc--CCCeEEEE
Confidence 0 011111 1110 0000000 000134568999999998875 37899999
Q ss_pred ecchhHHHHHHHHHhhhcCCceEEEEeCCCCHHHHHHHHHHHhcCCCceEEEeecccccccccccCCCEEEEEcCCCCHh
Q 042857 1094 SQMTKLLDILEDYLNIEFGPKTYERVDGSVSVGDRQAAITRFNQDKSRFVFLLSTRSCGLGINLATADTVIIYDSDFNPH 1173 (1404)
Q Consensus 1094 Sq~~~~LDiLed~L~~~f~g~~y~rLdGs~s~~eRq~~Id~Fn~~~s~~VfLLSTrAgG~GINL~~AdtVIi~DsdWNP~ 1173 (1404)
|++..+++.|.++|... .|+.+..+||+++..+|+++++.|+.+++...|||+|.+||+||||+.|++||+||+||||.
T Consensus 500 ~~~~~t~~~L~~~L~~~-~Gi~~~~ihG~~s~~eR~~~~~~F~~~~~~~~VLIsTdvgseGlNlq~a~~VInfDlP~nP~ 578 (956)
T PRK04914 500 CAKAATALQLEQALRER-EGIRAAVFHEGMSIIERDRAAAYFADEEDGAQVLLCSEIGSEGRNFQFASHLVLFDLPFNPD 578 (956)
T ss_pred eCcHHHHHHHHHHHhhc-cCeeEEEEECCCCHHHHHHHHHHHhcCCCCccEEEechhhccCCCcccccEEEEecCCCCHH
Confidence 99999999999999643 37899999999999999999999998654445789999999999999999999999999999
Q ss_pred HHHHHHHhhhccCCCCcEEEEEEeeCCCHHHHHHHHHHHHHhhhHHHh
Q 042857 1174 ADIQAMNRAHRIGQSKRLLVYRLVVRASVEERILQLAKKKLMLDQLFV 1221 (1404)
Q Consensus 1174 ~d~QAigRahRiGQ~k~V~VYrLvt~~TvEE~Ilq~a~~Kl~L~~~vv 1221 (1404)
.++||+||+||+||++.|.||.+++.+|++++|++....|+.+....+
T Consensus 579 ~~eQRIGR~~RiGQ~~~V~i~~~~~~~t~~e~i~~~~~~~l~ife~~~ 626 (956)
T PRK04914 579 LLEQRIGRLDRIGQKHDIQIHVPYLEGTAQERLFRWYHEGLNAFEHTC 626 (956)
T ss_pred HHHHHhcccccCCCCceEEEEEccCCCCHHHHHHHHHhhhcCceeccC
Confidence 999999999999999999999999999999999999999997655544
No 19
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=100.00 E-value=6.6e-48 Score=478.05 Aligned_cols=441 Identities=29% Similarity=0.456 Sum_probs=359.0
Q ss_pred HHHHHHHHHHHHh-hccCCcEEEEcCCCchHHHHHHHHHHHHHhhcc------CCCcEEEEeCCCChHHHHHHHHHHCC-
Q 042857 758 PHQLEALNWLRKC-WHKSKNVILADEMGLGKTVSACAFISSLYCEFK------AKLPCLVLVPLSTMPNWLAEFALWAP- 829 (1404)
Q Consensus 758 pyQlegVnwL~~~-~~~~~~~ILADEMGLGKTiqaIa~L~~L~~~~~------~~gP~LIVvP~Sll~nW~rEf~kw~P- 829 (1404)
.+|..+..|+... +..-.+||+||+||+|||+++|+++........ ..+..|||||.+++.+|..|+++..+
T Consensus 135 ~~~~~~~~~~~~~~~~~~~ggIladd~glgkt~~ti~l~l~~~~~~~~~~~~~~~kttLivcp~s~~~qW~~elek~~~~ 214 (674)
T KOG1001|consen 135 LKQKYRWSLLKSREQQSLRGGILADDMGLGKTVKTIALILKQKLKSKEEDRQKEFKTTLIVCPTSLLTQWKTELEKVTEE 214 (674)
T ss_pred HHHHHHHHhhcccccCccccceEeeccccchHHHHHHHHHhcccCCcchhhccccCceeEecchHHHHHHHHHHhccCCc
Confidence 5555555554332 223478999999999999999999987654433 44568999999999999999966653
Q ss_pred -CCcEEEEecchhHHHHHHHhhhccCCCCccccccCCCCceEEEeeHHHHHhhhccccCCCceEEEEccccccCCCccHH
Q 042857 830 -NLNVVEYHGCAKARAIIRQYEWHASDPDNLNKKTSSYKFNVLLTTYEMILADSSHLRGVPWEVLVVDEGHRLKNSGSKL 908 (1404)
Q Consensus 830 -~l~Vvvy~G~~~~R~~ir~~E~~~~~~~~~~~~~~~~kfdVvITTYe~l~~d~~~L~~i~w~lVIVDEAHrlKN~~Sk~ 908 (1404)
.+.+.+|+| |.. + .....+++||||||.++.. ..+..+.|-.+|+||||.++|..++.
T Consensus 215 ~~l~v~v~~g----r~k---------d------~~el~~~dVVltTy~il~~--~~l~~i~w~Riildea~~ikn~~tq~ 273 (674)
T KOG1001|consen 215 DKLSIYVYHG----RTK---------D------KSELNSYDVVLTTYDILKN--SPLVKIKWLRIVLDEAHTIKNKDTQI 273 (674)
T ss_pred cceEEEEecc----ccc---------c------cchhcCCceEEeeHHHhhc--ccccceeEEEEEeccccccCCcchHh
Confidence 578899998 110 0 1122467899999999986 55667999999999999999999999
Q ss_pred HHHHhhcccccEEEEeccCCCCChHHHHHHhhhhCCCCCCChhHHHHHhccccch----HHHHHHHHhhhhhhhhhhHhh
Q 042857 909 FSLLNSFSFQHRVLLTGTPLQNNIGEMYNLLNFLQPASFPSLSSFEEKFNDLTTT----QKVEELKKLVAPHMLRRLKKD 984 (1404)
Q Consensus 909 ~~~L~~l~~~~rLLLTGTPlqNnl~EL~sLL~fL~P~~f~s~~~F~~~f~d~~~~----~~i~~L~~lL~p~mLRR~K~d 984 (1404)
+.++..+.+.+||.|||||+||++.|||+++.|+.-..|.....|...+..+... +....++.+|.++++||+|..
T Consensus 274 ~~a~~~L~a~~RWcLtgtPiqn~~~~lysl~~fl~~~p~~~~~~~~~~i~~p~~~~~~~~~~k~l~~~L~~v~lrrtK~~ 353 (674)
T KOG1001|consen 274 FKAVCQLDAKYRWCLTGTPIQNNLDELYSLFKFLEIHPYCDQNYFKLLIQDPDERNKYKEGVKTLQGILKKVMLRRTKEM 353 (674)
T ss_pred hhhheeeccceeeeecCChhhhhHHHHHHHHHHhhcCCchhhHHHHHHhcChhhhhhHHHHHHHHHHHHHHHHhcccccc
Confidence 9999999999999999999999999999999999999999999998888765432 446788899999999999963
Q ss_pred h-----hhcCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHhhc----cchhhHHHHHHHHHHHHHhCCCCCCCCCCCC
Q 042857 985 A-----MQNIPPKTERMVPVELSSIQAEYYRAMLTKNYQILRNIG----KGVAQQSMLNIVMQLRKVCNHPYLIPGTEPD 1055 (1404)
Q Consensus 985 V-----~~~LPpk~e~iV~V~LS~~Qk~~Y~~il~~n~~~L~~~~----kg~~~~sllnilm~LRK~cnHP~L~~~~e~~ 1055 (1404)
- ...|||+...++.+.++..++.+|..+............ .......++-.+.+||++|+||+++......
T Consensus 354 ~~~gk~i~~lppk~v~~~~~~~~~~e~~~y~~l~~~~~~~~~~~~~~~~~~~~Y~~~l~~lLrlrq~c~h~~lv~~~~~~ 433 (674)
T KOG1001|consen 354 EVDGKPILELPPKTVFVTEVDLSKSERSAYKALKANSRNQFSNYANEGTVSSTYAFFLKNLLRLRQACDHSLLVMYEMDS 433 (674)
T ss_pred cccCccccccCcceeEeeeccccHhHHHHHHHHhhhhhhHHHHHhhhchhhhhHHHHHHHHHHHHHHccchHhhhhhhhc
Confidence 2 346999999999999999999999999877654443322 1223346677888999999999987432110
Q ss_pred CC------c--HH---------------------------------------------------HH-HHHHHh-------
Q 042857 1056 SG------S--VE---------------------------------------------------FL-HEMRIK------- 1068 (1404)
Q Consensus 1056 ~~------~--~e---------------------------------------------------~l-~~~~i~------- 1068 (1404)
.+ . .. .+ ...++.
T Consensus 434 ~~~~~~~~~~~~~~i~~l~~~~~c~ic~~~~~~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~~~l~s~~~~~~~ 513 (674)
T KOG1001|consen 434 LGDSGSAAALIIRLIVDLSVSHWCHICCDLDSFFITRCGHDFCVECLKKSIQQSENAPCPLCRNVLKEKKLLSANPLPSI 513 (674)
T ss_pred cccccccchHHHHHHHHHhhccccccccccccceeecccchHHHHHHHhccccccCCCCcHHHHHHHHHHHhhcccccch
Confidence 00 0 00 00 000111
Q ss_pred ------hhhHHHHHHHHHHHHHHcCC-eEEEEecchhHHHHHHHHHhhhcCCceEEEEeCCCCHHHHHHHHHHHhcCCCc
Q 042857 1069 ------ASAKLTLLHSMLKVLYKEGH-RVLIFSQMTKLLDILEDYLNIEFGPKTYERVDGSVSVGDRQAAITRFNQDKSR 1141 (1404)
Q Consensus 1069 ------~SgKl~~L~kLL~kl~~~G~-KVLIFSq~~~~LDiLed~L~~~f~g~~y~rLdGs~s~~eRq~~Id~Fn~~~s~ 1141 (1404)
.|.|+..+.++|........ ++|||||++.++++++..|... ++.+.+++|.++...|.+.+..|+.++..
T Consensus 514 ~~~~~~~s~ki~~~~~~l~~~~~s~~~kiiifsq~~~~l~l~~~~l~~~--~~~~~~~~g~~~~~~r~~s~~~~~~~~~~ 591 (674)
T KOG1001|consen 514 INDLLPESSKIYAFLKILQAKEMSEQPKIVIFSQLIWGLALVCLRLFFK--GFVFLRYDGEMLMKIRTKSFTDFPCDPLV 591 (674)
T ss_pred hhhccchhhhhHHHHHHHhhccCCCCCceeeehhHHHHHHHhhhhhhhc--ccccchhhhhhHHHHHHhhhcccccCccH
Confidence 27888888888885544455 9999999999999999999854 89999999999999999999999988888
Q ss_pred eEEEeecccccccccccCCCEEEEEcCCCCHhHHHHHHHhhhccCCCCcEEEEEEeeCCCHHHHHHHHHHHHHhhhHHHh
Q 042857 1142 FVFLLSTRSCGLGINLATADTVIIYDSDFNPHADIQAMNRAHRIGQSKRLLVYRLVVRASVEERILQLAKKKLMLDQLFV 1221 (1404)
Q Consensus 1142 ~VfLLSTrAgG~GINL~~AdtVIi~DsdWNP~~d~QAigRahRiGQ~k~V~VYrLvt~~TvEE~Ilq~a~~Kl~L~~~vv 1221 (1404)
.|+|+|.+|||.||||+.|++||++|++|||....||++||||+||+++|.|+||+..+|+||+|+.++++|..+.....
T Consensus 592 ~vll~Slkag~~glnlt~a~~v~~~d~~wnp~~eeQaidR~hrigq~k~v~v~r~~i~dtveer~l~iq~~K~~~~~~a~ 671 (674)
T KOG1001|consen 592 TALLMSLKAGKVGLNLTAASHVLLMDPWWNPAVEEQAIDRAHRIGQTKPVKVSRFIIKDTVEERILKIQEKKREYNASAF 671 (674)
T ss_pred HHHHHHHHHhhhhhchhhhhHHHhhchhcChHHHHHHHHHHHHhcccceeeeeeehhhhccHHHHHHHHHHHHHHHhhhc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999998765543
No 20
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=100.00 E-value=1.7e-41 Score=388.07 Aligned_cols=276 Identities=40% Similarity=0.702 Sum_probs=230.5
Q ss_pred HHHHHHHHHHHhh---------ccCCcEEEEcCCCchHHHHHHHHHHHHHhhccCC--CcEEEEeCCCChHHHHHHHHHH
Q 042857 759 HQLEALNWLRKCW---------HKSKNVILADEMGLGKTVSACAFISSLYCEFKAK--LPCLVLVPLSTMPNWLAEFALW 827 (1404)
Q Consensus 759 yQlegVnwL~~~~---------~~~~~~ILADEMGLGKTiqaIa~L~~L~~~~~~~--gP~LIVvP~Sll~nW~rEf~kw 827 (1404)
||++||+||+..+ ...+++|||||||+|||+++++++.++....... .++|||||.+++.+|..||.+|
T Consensus 1 ~Q~~~v~~m~~~~~~~~~~~~~~~~~g~lL~de~GlGKT~~~i~~~~~l~~~~~~~~~~~~LIv~P~~l~~~W~~E~~~~ 80 (299)
T PF00176_consen 1 HQLEAVRWMLDRELVEEYPNSESPPRGGLLADEMGLGKTITAIALISYLKNEFPQRGEKKTLIVVPSSLLSQWKEEIEKW 80 (299)
T ss_dssp HHHHHHHHHHHHH----TTSSSTTT-EEEE---TTSSHHHHHHHHHHHHHHCCTTSS-S-EEEEE-TTTHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhhhcccccccCCCCEEEEECCCCCchhhhhhhhhhhhhccccccccceeEeeccchhhhhhhhhccc
Confidence 8999999999998 7789999999999999999999999887655443 2699999999999999999999
Q ss_pred C-C-CCcEEEEecchhHHHHHHHhhhccCCCCccccccCCCCceEEEeeHHHHH-----hhhccccCCCceEEEEccccc
Q 042857 828 A-P-NLNVVEYHGCAKARAIIRQYEWHASDPDNLNKKTSSYKFNVLLTTYEMIL-----ADSSHLRGVPWEVLVVDEGHR 900 (1404)
Q Consensus 828 ~-P-~l~Vvvy~G~~~~R~~ir~~E~~~~~~~~~~~~~~~~kfdVvITTYe~l~-----~d~~~L~~i~w~lVIVDEAHr 900 (1404)
+ | ++++++|.|....+.. .......++|+|+||+.+. .....+..++|++|||||+|+
T Consensus 81 ~~~~~~~v~~~~~~~~~~~~---------------~~~~~~~~~vvi~ty~~~~~~~~~~~~~~l~~~~~~~vIvDEaH~ 145 (299)
T PF00176_consen 81 FDPDSLRVIIYDGDSERRRL---------------SKNQLPKYDVVITTYETLRKARKKKDKEDLKQIKWDRVIVDEAHR 145 (299)
T ss_dssp SGT-TS-EEEESSSCHHHHT---------------TSSSCCCSSEEEEEHHHHH--TSTHTTHHHHTSEEEEEEETTGGG
T ss_pred cccccccccccccccccccc---------------cccccccceeeeccccccccccccccccccccccceeEEEecccc
Confidence 9 4 7899999987722211 1122357899999999999 667788889999999999999
Q ss_pred cCCCccHHHHHHhhcccccEEEEeccCCCCChHHHHHHhhhhCCCCCCChhHHHHHhcc---ccchHHHHHHHHhhhhhh
Q 042857 901 LKNSGSKLFSLLNSFSFQHRVLLTGTPLQNNIGEMYNLLNFLQPASFPSLSSFEEKFND---LTTTQKVEELKKLVAPHM 977 (1404)
Q Consensus 901 lKN~~Sk~~~~L~~l~~~~rLLLTGTPlqNnl~EL~sLL~fL~P~~f~s~~~F~~~f~d---~~~~~~i~~L~~lL~p~m 977 (1404)
++|..+..++++..+...++|+|||||++|++.|||++++||.|..+.+...|...|.. ........+|..++.+++
T Consensus 146 ~k~~~s~~~~~l~~l~~~~~~lLSgTP~~n~~~dl~~~l~~L~~~~~~~~~~f~~~~~~~~~~~~~~~~~~L~~~l~~~~ 225 (299)
T PF00176_consen 146 LKNKDSKRYKALRKLRARYRWLLSGTPIQNSLEDLYSLLRFLNPDPFSDRRSFKKWFYRPDKENSYENIERLRELLSEFM 225 (299)
T ss_dssp GTTTTSHHHHHHHCCCECEEEEE-SS-SSSGSHHHHHHHHHHCTTTCSSHHHHHHHTHHHHHTHHHHHHHHHHHHHCCCE
T ss_pred cccccccccccccccccceEEeeccccccccccccccchheeeccccccchhhhhhhhhhccccccccccccccccchhh
Confidence 99999999999999999999999999999999999999999999999999999999853 345567889999999999
Q ss_pred hhhhHhhhhhcCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHhhc--cchhhHHHHHHHHHHHHHhCCCCCC
Q 042857 978 LRRLKKDAMQNIPPKTERMVPVELSSIQAEYYRAMLTKNYQILRNIG--KGVAQQSMLNIVMQLRKVCNHPYLI 1049 (1404)
Q Consensus 978 LRR~K~dV~~~LPpk~e~iV~V~LS~~Qk~~Y~~il~~n~~~L~~~~--kg~~~~sllnilm~LRK~cnHP~L~ 1049 (1404)
+||++.++...+|+..+.++.|+|++.|+.+|+.+.......+.... .......++..+++||++|+||+|+
T Consensus 226 ~r~~~~d~~~~lp~~~~~~~~~~ls~~q~~~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~c~hp~l~ 299 (299)
T PF00176_consen 226 IRRTKKDVEKELPPKIEHVINVELSPEQRELYNELLKEARENLKQSSRKKSKKLSSLLQILKRLRQVCNHPYLV 299 (299)
T ss_dssp ECHCGGGGCTTSTCEEEEEEEEGG-HHHHHHHHHHHHHHGGCCTT-T--TCHHHHHHHHHHHHHHHHHH-THHC
T ss_pred hhhhcccccccCCceEEEEEEeCCCHHHHHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHhCCcccC
Confidence 99999999889999999999999999999999998887665544333 3445668899999999999999975
No 21
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=6.1e-36 Score=372.54 Aligned_cols=342 Identities=18% Similarity=0.273 Sum_probs=254.0
Q ss_pred CCCCCHHHHHHHHHHHHhhccCCcEEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEeCCCC-hHHHHHHHHHHC--C
Q 042857 753 GGALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLST-MPNWLAEFALWA--P 829 (1404)
Q Consensus 753 g~~L~pyQlegVnwL~~~~~~~~~~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP~Sl-l~nW~rEf~kw~--P 829 (1404)
...|||||.+++.++... ...++|||..+||+|||+++++++..+ .+++|||||.+. +.||.+||.+|+ +
T Consensus 253 ~~~LRpYQ~eAl~~~~~~-gr~r~GIIvLPtGaGKTlvai~aa~~l------~k~tLILvps~~Lv~QW~~ef~~~~~l~ 325 (732)
T TIGR00603 253 TTQIRPYQEKSLSKMFGN-GRARSGIIVLPCGAGKSLVGVTAACTV------KKSCLVLCTSAVSVEQWKQQFKMWSTID 325 (732)
T ss_pred CCCcCHHHHHHHHHHHhc-CCCCCcEEEeCCCCChHHHHHHHHHHh------CCCEEEEeCcHHHHHHHHHHHHHhcCCC
Confidence 357999999999988541 112589999999999999999988765 358999999886 689999999997 3
Q ss_pred CCcEEEEecchhHHHHHHHhhhccCCCCccccccCCCCceEEEeeHHHHHhh----------hccccCCCceEEEEcccc
Q 042857 830 NLNVVEYHGCAKARAIIRQYEWHASDPDNLNKKTSSYKFNVLLTTYEMILAD----------SSHLRGVPWEVLVVDEGH 899 (1404)
Q Consensus 830 ~l~Vvvy~G~~~~R~~ir~~E~~~~~~~~~~~~~~~~kfdVvITTYe~l~~d----------~~~L~~i~w~lVIVDEAH 899 (1404)
...+..|+|....+ ......|+|+||+++... ...|....|++||+||+|
T Consensus 326 ~~~I~~~tg~~k~~--------------------~~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~~~gLII~DEvH 385 (732)
T TIGR00603 326 DSQICRFTSDAKER--------------------FHGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTNREWGLILLDEVH 385 (732)
T ss_pred CceEEEEecCcccc--------------------cccCCcEEEEEHHHhhcccccchhhhHHHHHhccccCCEEEEEccc
Confidence 45677777753221 012357999999998643 234556689999999999
Q ss_pred ccCCCccHHHHHHhhcccccEEEEeccCCCCChHHHHHHhhh-hCCCCCCChhHHHHHhccccchHHHHHHHHhhhhhhh
Q 042857 900 RLKNSGSKLFSLLNSFSFQHRVLLTGTPLQNNIGEMYNLLNF-LQPASFPSLSSFEEKFNDLTTTQKVEELKKLVAPHML 978 (1404)
Q Consensus 900 rlKN~~Sk~~~~L~~l~~~~rLLLTGTPlqNnl~EL~sLL~f-L~P~~f~s~~~F~~~f~d~~~~~~i~~L~~lL~p~mL 978 (1404)
++.+ ....+++..+.+.+||+|||||++++- .+..|.| +.|..|.
T Consensus 386 ~lpA--~~fr~il~~l~a~~RLGLTATP~ReD~--~~~~L~~LiGP~vye------------------------------ 431 (732)
T TIGR00603 386 VVPA--AMFRRVLTIVQAHCKLGLTATLVREDD--KITDLNFLIGPKLYE------------------------------ 431 (732)
T ss_pred cccH--HHHHHHHHhcCcCcEEEEeecCcccCC--chhhhhhhcCCeeee------------------------------
Confidence 9953 445557788899999999999998762 2333443 3343321
Q ss_pred hhhHhhhh--hcCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHhCCCCCCCCCCCCC
Q 042857 979 RRLKKDAM--QNIPPKTERMVPVELSSIQAEYYRAMLTKNYQILRNIGKGVAQQSMLNIVMQLRKVCNHPYLIPGTEPDS 1056 (1404)
Q Consensus 979 RR~K~dV~--~~LPpk~e~iV~V~LS~~Qk~~Y~~il~~n~~~L~~~~kg~~~~sllnilm~LRK~cnHP~L~~~~e~~~ 1056 (1404)
-...+.. ..|.+.....|.|+|++.....| +.... . .+...
T Consensus 432 -~~~~eLi~~G~LA~~~~~ev~v~~t~~~~~~y---l~~~~-------~-------------~k~~l------------- 474 (732)
T TIGR00603 432 -ANWMELQKKGFIANVQCAEVWCPMTPEFYREY---LRENS-------R-------------KRMLL------------- 474 (732)
T ss_pred -cCHHHHHhCCccccceEEEEEecCCHHHHHHH---HHhcc-------h-------------hhhHH-------------
Confidence 1111111 24667777889999998654333 21100 0 00000
Q ss_pred CcHHHHHHHHHhhhhHHHHHHHHHHHHHHcCCeEEEEecchhHHHHHHHHHhhhcCCceEEEEeCCCCHHHHHHHHHHHh
Q 042857 1057 GSVEFLHEMRIKASAKLTLLHSMLKVLYKEGHRVLIFSQMTKLLDILEDYLNIEFGPKTYERVDGSVSVGDRQAAITRFN 1136 (1404)
Q Consensus 1057 ~~~e~l~~~~i~~SgKl~~L~kLL~kl~~~G~KVLIFSq~~~~LDiLed~L~~~f~g~~y~rLdGs~s~~eRq~~Id~Fn 1136 (1404)
......|+..+..++......|+++||||+++..++.+...|. ...|+|.++..+|++++++|+
T Consensus 475 ---------~~~np~K~~~~~~Li~~he~~g~kiLVF~~~~~~l~~~a~~L~-------~~~I~G~ts~~ER~~il~~Fr 538 (732)
T TIGR00603 475 ---------YVMNPNKFRACQFLIRFHEQRGDKIIVFSDNVFALKEYAIKLG-------KPFIYGPTSQQERMQILQNFQ 538 (732)
T ss_pred ---------hhhChHHHHHHHHHHHHHhhcCCeEEEEeCCHHHHHHHHHHcC-------CceEECCCCHHHHHHHHHHHH
Confidence 0123578899988888766789999999999988888877663 234899999999999999998
Q ss_pred cCCCceEEEeecccccccccccCCCEEEEEcCCC-CHhHHHHHHHhhhccCCCCc-----EEEEEEeeCCCHHHHHHHH
Q 042857 1137 QDKSRFVFLLSTRSCGLGINLATADTVIIYDSDF-NPHADIQAMNRAHRIGQSKR-----LLVYRLVVRASVEERILQL 1209 (1404)
Q Consensus 1137 ~~~s~~VfLLSTrAgG~GINL~~AdtVIi~DsdW-NP~~d~QAigRahRiGQ~k~-----V~VYrLvt~~TvEE~Ilq~ 1209 (1404)
.++.. -+|++|++|++||||+.|++||++++++ ++..++||+||+.|.+..+. ..+|.||+++|.|+..-.+
T Consensus 539 ~~~~i-~vLv~SkVgdeGIDlP~a~vvI~~s~~~gS~~q~iQRlGRilR~~~~~~~~~~~A~fY~lVs~dT~E~~~s~~ 616 (732)
T TIGR00603 539 HNPKV-NTIFLSKVGDTSIDLPEANVLIQISSHYGSRRQEAQRLGRILRAKKGSDAEEYNAFFYSLVSKDTQEMYYSTK 616 (732)
T ss_pred hCCCc-cEEEEecccccccCCCCCCEEEEeCCCCCCHHHHHHHhcccccCCCCCccccccceEEEEecCCchHHHHHHH
Confidence 65443 3566779999999999999999999986 99999999999999997543 7899999999999887543
No 22
>PRK13766 Hef nuclease; Provisional
Probab=100.00 E-value=1.9e-32 Score=354.33 Aligned_cols=430 Identities=17% Similarity=0.171 Sum_probs=279.9
Q ss_pred CCCCHHHHHHHHHHHHhhccCCcEEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEeCC-CChHHHHHHHHHHCC--C
Q 042857 754 GALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPL-STMPNWLAEFALWAP--N 830 (1404)
Q Consensus 754 ~~L~pyQlegVnwL~~~~~~~~~~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP~-Sll~nW~rEf~kw~P--~ 830 (1404)
.++++||.+.+..++. .++|+++++|+|||++++.++..++. ...+++|||||. .++.||..+|..++. .
T Consensus 14 ~~~r~yQ~~~~~~~l~-----~n~lv~~ptG~GKT~~a~~~i~~~l~--~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~ 86 (773)
T PRK13766 14 IEARLYQQLLAATALK-----KNTLVVLPTGLGKTAIALLVIAERLH--KKGGKVLILAPTKPLVEQHAEFFRKFLNIPE 86 (773)
T ss_pred CCccHHHHHHHHHHhc-----CCeEEEcCCCccHHHHHHHHHHHHHH--hCCCeEEEEeCcHHHHHHHHHHHHHHhCCCC
Confidence 4689999999887655 38999999999999999988887763 345689999998 566899999998863 3
Q ss_pred CcEEEEecchhHHHHHHHhhhccCCCCccccccCCCCceEEEeeHHHHHhhh--ccccCCCceEEEEccccccCCCccHH
Q 042857 831 LNVVEYHGCAKARAIIRQYEWHASDPDNLNKKTSSYKFNVLLTTYEMILADS--SHLRGVPWEVLVVDEGHRLKNSGSKL 908 (1404)
Q Consensus 831 l~Vvvy~G~~~~R~~ir~~E~~~~~~~~~~~~~~~~kfdVvITTYe~l~~d~--~~L~~i~w~lVIVDEAHrlKN~~Sk~ 908 (1404)
..++.++|..........+ ...+|+++|++.+..+. ..+....|++|||||||++.+..+..
T Consensus 87 ~~v~~~~g~~~~~~r~~~~----------------~~~~iiv~T~~~l~~~l~~~~~~~~~~~liVvDEaH~~~~~~~~~ 150 (773)
T PRK13766 87 EKIVVFTGEVSPEKRAELW----------------EKAKVIVATPQVIENDLIAGRISLEDVSLLIFDEAHRAVGNYAYV 150 (773)
T ss_pred ceEEEEeCCCCHHHHHHHH----------------hCCCEEEECHHHHHHHHHcCCCChhhCcEEEEECCccccccccHH
Confidence 4788888865443211111 14579999999998764 33444578999999999998755443
Q ss_pred HHHHh---hcccccEEEEeccCCCCChHHHHHHhhhhCCCCCCCh----hHHHHHhc-------cccchHHHHHHHHhhh
Q 042857 909 FSLLN---SFSFQHRVLLTGTPLQNNIGEMYNLLNFLQPASFPSL----SSFEEKFN-------DLTTTQKVEELKKLVA 974 (1404)
Q Consensus 909 ~~~L~---~l~~~~rLLLTGTPlqNnl~EL~sLL~fL~P~~f~s~----~~F~~~f~-------d~~~~~~i~~L~~lL~ 974 (1404)
+.+-. .....++++|||||.++ ...+..+++-|....+.-. ..+...+. ...-......++.+|.
T Consensus 151 ~i~~~~~~~~~~~~il~lTaTP~~~-~~~i~~~~~~L~i~~v~~~~~~~~~v~~~~~~~~v~~~~v~l~~~~~~i~~~l~ 229 (773)
T PRK13766 151 YIAERYHEDAKNPLVLGLTASPGSD-EEKIKEVCENLGIEHVEVRTEDDPDVKPYVHKVKIEWVRVELPEELKEIRDLLN 229 (773)
T ss_pred HHHHHHHhcCCCCEEEEEEcCCCCC-HHHHHHHHHhCCceEEEEcCCCChhHHhhhccceeEEEEeCCcHHHHHHHHHHH
Confidence 32222 22345689999999775 5566666665542221111 11111111 1222355677888888
Q ss_pred hhhhhhhHhhhhhc-CCCceEEEEEecCCHHHHHHHHHHHHHHH---HHHHhhc------------cchhhHHHHHHHHH
Q 042857 975 PHMLRRLKKDAMQN-IPPKTERMVPVELSSIQAEYYRAMLTKNY---QILRNIG------------KGVAQQSMLNIVMQ 1038 (1404)
Q Consensus 975 p~mLRR~K~dV~~~-LPpk~e~iV~V~LS~~Qk~~Y~~il~~n~---~~L~~~~------------kg~~~~sllnilm~ 1038 (1404)
.++.+|++...... +++....+....+...+..++..+..... ..+.... .......+...+..
T Consensus 230 ~~~~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~y~~~ 309 (773)
T PRK13766 230 EALKDRLKKLKELGVIVSISPDVSKKELLGLQKKLQQEIANDDSEGYEAISILAEAMKLRHAVELLETQGVEALRRYLER 309 (773)
T ss_pred HHHHHHHHHHHHCCCcccCCCCcCHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHH
Confidence 88888877644322 22222222222333333333333211100 0000000 00001122223333
Q ss_pred HHHHhCCCCCCCCCCCCCCcHH---HHH--HHHHhhhhHHHHHHHHHHHHH--HcCCeEEEEecchhHHHHHHHHHhhhc
Q 042857 1039 LRKVCNHPYLIPGTEPDSGSVE---FLH--EMRIKASAKLTLLHSMLKVLY--KEGHRVLIFSQMTKLLDILEDYLNIEF 1111 (1404)
Q Consensus 1039 LRK~cnHP~L~~~~e~~~~~~e---~l~--~~~i~~SgKl~~L~kLL~kl~--~~G~KVLIFSq~~~~LDiLed~L~~~f 1111 (1404)
++....++.............. .+. ......++|+..|.++|.... ..+.|+||||++..+++.|.++|...
T Consensus 310 l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~pK~~~L~~il~~~~~~~~~~kvlIF~~~~~t~~~L~~~L~~~- 388 (773)
T PRK13766 310 LREEARSSGGSKASKRLVEDPRFRKAVRKAKELDIEHPKLEKLREIVKEQLGKNPDSRIIVFTQYRDTAEKIVDLLEKE- 388 (773)
T ss_pred HHhhccccCCcHHHHHHHhCHHHHHHHHHHHhcccCChHHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHhC-
Confidence 3322211110000000000000 000 001234789999999999887 46899999999999999999999764
Q ss_pred CCceEEEEeCC--------CCHHHHHHHHHHHhcCCCceEEEeecccccccccccCCCEEEEEcCCCCHhHHHHHHHhhh
Q 042857 1112 GPKTYERVDGS--------VSVGDRQAAITRFNQDKSRFVFLLSTRSCGLGINLATADTVIIYDSDFNPHADIQAMNRAH 1183 (1404)
Q Consensus 1112 ~g~~y~rLdGs--------~s~~eRq~~Id~Fn~~~s~~VfLLSTrAgG~GINL~~AdtVIi~DsdWNP~~d~QAigRah 1183 (1404)
++.+.+++|. ++..+|++++++|+.+.. -+|++|.++++|+|++.+++||+||++|||..++|+.||++
T Consensus 389 -~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~g~~--~vLvaT~~~~eGldi~~~~~VI~yd~~~s~~r~iQR~GR~g 465 (773)
T PRK13766 389 -GIKAVRFVGQASKDGDKGMSQKEQIEILDKFRAGEF--NVLVSTSVAEEGLDIPSVDLVIFYEPVPSEIRSIQRKGRTG 465 (773)
T ss_pred -CCceEEEEccccccccCCCCHHHHHHHHHHHHcCCC--CEEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccC
Confidence 7889999987 888999999999987654 48899999999999999999999999999999999888888
Q ss_pred ccCCCCcEEEEEEeeCCCHHHHHHHHHHHHH
Q 042857 1184 RIGQSKRLLVYRLVVRASVEERILQLAKKKL 1214 (1404)
Q Consensus 1184 RiGQ~k~V~VYrLvt~~TvEE~Ilq~a~~Kl 1214 (1404)
|.|+ ..||.|++.+|+||.++....+|.
T Consensus 466 R~~~---~~v~~l~~~~t~ee~~y~~~~~ke 493 (773)
T PRK13766 466 RQEE---GRVVVLIAKGTRDEAYYWSSRRKE 493 (773)
T ss_pred cCCC---CEEEEEEeCCChHHHHHHHhhHHH
Confidence 8775 678999999999999887664443
No 23
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=99.96 E-value=2e-29 Score=314.89 Aligned_cols=261 Identities=26% Similarity=0.416 Sum_probs=199.4
Q ss_pred ccCCcEEEEcCCCchHHHHHHHHHHHHHh------------hc---cCCCcEEEEeCCCChHHHHHHHHHHCCCC-cEEE
Q 042857 772 HKSKNVILADEMGLGKTVSACAFISSLYC------------EF---KAKLPCLVLVPLSTMPNWLAEFALWAPNL-NVVE 835 (1404)
Q Consensus 772 ~~~~~~ILADEMGLGKTiqaIa~L~~L~~------------~~---~~~gP~LIVvP~Sll~nW~rEf~kw~P~l-~Vvv 835 (1404)
..|..+++|||||+|||...++....-.. ++ ...|.+|||||.+++.||-.||.++++.+ .|..
T Consensus 372 ~~g~~~~~ade~~~qk~~~~l~~~l~~~~k~~~~~cS~~~~e~~n~~~tgaTLII~P~aIl~QW~~EI~kH~~~~lKv~~ 451 (1394)
T KOG0298|consen 372 KHGKRVQCADEMGWQKTSEKLILELSDLPKLCPSCCSELVKEGENLVETGATLIICPNAILMQWFEEIHKHISSLLKVLL 451 (1394)
T ss_pred cCCcceeehhhhhccchHHHHHHHHhcccccchhhhhHHHhcccceeecCceEEECcHHHHHHHHHHHHHhccccceEEE
Confidence 34567899999999999988877654211 11 13467999999999999999999999876 9999
Q ss_pred EecchhHHHHHHHhhhccCCCCccccccCCCCceEEEeeHHHHHhhh----------------------ccccCCCceEE
Q 042857 836 YHGCAKARAIIRQYEWHASDPDNLNKKTSSYKFNVLLTTYEMILADS----------------------SHLRGVPWEVL 893 (1404)
Q Consensus 836 y~G~~~~R~~ir~~E~~~~~~~~~~~~~~~~kfdVvITTYe~l~~d~----------------------~~L~~i~w~lV 893 (1404)
|.|-...- + ........+|||||||+.+..+. +.|-.+.|-.|
T Consensus 452 Y~Girk~~-------~--------~~~~el~~yDIVlTtYdiLr~El~hte~~~~~R~lR~qsr~~~~~SPL~~v~wWRI 516 (1394)
T KOG0298|consen 452 YFGIRKTF-------W--------LSPFELLQYDIVLTTYDILRNELYHTEDFGSDRQLRHQSRYMRPNSPLLMVNWWRI 516 (1394)
T ss_pred Eechhhhc-------c--------cCchhhhccCEEEeehHHHHhHhhcccccCChhhhhcccCCCCCCCchHHHHHHHH
Confidence 99954321 1 11234568999999999998652 33455679999
Q ss_pred EEccccccCCCccHHHHHHhhcccccEEEEeccCCCCChHHHHHHhhhhCCCCCCChhHHHHHhccccc-hHHHHHHHHh
Q 042857 894 VVDEGHRLKNSGSKLFSLLNSFSFQHRVLLTGTPLQNNIGEMYNLLNFLQPASFPSLSSFEEKFNDLTT-TQKVEELKKL 972 (1404)
Q Consensus 894 IVDEAHrlKN~~Sk~~~~L~~l~~~~rLLLTGTPlqNnl~EL~sLL~fL~P~~f~s~~~F~~~f~d~~~-~~~i~~L~~l 972 (1404)
+||||+.+....|...+.+..+.+.++|.+||||+|+ +.+||.||.||.-.+|.....|.+...+... ......++++
T Consensus 517 clDEaQMvesssS~~a~M~~rL~~in~W~VTGTPiq~-Iddl~~Ll~fLk~~Pf~~~~~~iq~v~~~~~~ra~~~~~~dl 595 (1394)
T KOG0298|consen 517 CLDEAQMVESSSSAAAEMVRRLHAINRWCVTGTPIQK-IDDLFPLLEFLKLPPFCRPQDFIQTVDKAYQLRAKCEPLLDL 595 (1394)
T ss_pred hhhHHHhhcchHHHHHHHHHHhhhhceeeecCCchhh-hhhhHHHHHHhcCCCCCChHHHHHHHHHHHHHHhhhhhHHHH
Confidence 9999999999999999999999999999999999999 9999999999998889998888776654221 1334567888
Q ss_pred hhhhhhhhhHhhhhhc--CCCceEEEEEecCCHHHHHHHHHHH----HHHHH---HHHh--hc-----cc---hhhHHHH
Q 042857 973 VAPHMLRRLKKDAMQN--IPPKTERMVPVELSSIQAEYYRAML----TKNYQ---ILRN--IG-----KG---VAQQSML 1033 (1404)
Q Consensus 973 L~p~mLRR~K~dV~~~--LPpk~e~iV~V~LS~~Qk~~Y~~il----~~n~~---~L~~--~~-----kg---~~~~sll 1033 (1404)
+...+-|+.+-+|... +||-.+.+-...+++.+..+|+... ..... .+.. .+ .+ .....++
T Consensus 596 ~~q~l~R~~k~~v~~el~~ppq~e~~h~~~~sa~~s~v~r~~~~t~v~e~~~~~~~~k~~~l~~~sd~~~l~~~~~a~i~ 675 (1394)
T KOG0298|consen 596 FKQLLWRTFKSKVEHELGLPPQTEVVHRLELSAVESHVYREEHFTCVEEFAAAVEKLKRHNLDNSSDLASLSPQLLAIIL 675 (1394)
T ss_pred HHhhhhhhhhHHHHHHhCCCchHHHHHHHHhcchhhhhhHHHHhhHHHHHHHHHHHHHHhccccccccccCChhhHHHHH
Confidence 8999999999988754 8898888888888888877776542 22222 2221 10 11 1234678
Q ss_pred HHHHHHHHHhCCCCC
Q 042857 1034 NIVMQLRKVCNHPYL 1048 (1404)
Q Consensus 1034 nilm~LRK~cnHP~L 1048 (1404)
+.+.+||++|+||..
T Consensus 676 ~~l~rLRq~Cchplv 690 (1394)
T KOG0298|consen 676 KWLLRLRQACCHPLV 690 (1394)
T ss_pred HHHHHHHHhhccccc
Confidence 899999999999864
No 24
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=99.96 E-value=1.4e-26 Score=270.32 Aligned_cols=419 Identities=17% Similarity=0.166 Sum_probs=263.0
Q ss_pred CCCHHHHHHHHHHHHhhccCCcEEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEeCCC-ChHHHHHHHHHHC--CCC
Q 042857 755 ALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLS-TMPNWLAEFALWA--PNL 831 (1404)
Q Consensus 755 ~L~pyQlegVnwL~~~~~~~~~~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP~S-ll~nW~rEf~kw~--P~l 831 (1404)
+.|.||+.-+.-.+. .|++++-.+|||||+.|+.++.+.+...+. .+|+++|+- ++.|..+-|.+.+ |.-
T Consensus 15 e~R~YQ~~i~a~al~-----~NtLvvlPTGLGKT~IA~~V~~~~l~~~~~--kvlfLAPTKPLV~Qh~~~~~~v~~ip~~ 87 (542)
T COG1111 15 EPRLYQLNIAAKALF-----KNTLVVLPTGLGKTFIAAMVIANRLRWFGG--KVLFLAPTKPLVLQHAEFCRKVTGIPED 87 (542)
T ss_pred cHHHHHHHHHHHHhh-----cCeEEEecCCccHHHHHHHHHHHHHHhcCC--eEEEecCCchHHHHHHHHHHHHhCCChh
Confidence 578999988776655 599999999999999999999877655443 699999985 6688888888886 567
Q ss_pred cEEEEecchhHHHHHHHhhhccCCCCccccccCCCCceEEEeeHHHHHhhh--ccccCCCceEEEEccccccCCCccHHH
Q 042857 832 NVVEYHGCAKARAIIRQYEWHASDPDNLNKKTSSYKFNVLLTTYEMILADS--SHLRGVPWEVLVVDEGHRLKNSGSKLF 909 (1404)
Q Consensus 832 ~Vvvy~G~~~~R~~ir~~E~~~~~~~~~~~~~~~~kfdVvITTYe~l~~d~--~~L~~i~w~lVIVDEAHrlKN~~Sk~~ 909 (1404)
.++.+.|...... |...| .+-.|++.|++++.+|. ..+..-++.+||+|||||.-+..+-.+
T Consensus 88 ~i~~ltGev~p~~--R~~~w--------------~~~kVfvaTPQvveNDl~~Grid~~dv~~lifDEAHRAvGnyAYv~ 151 (542)
T COG1111 88 EIAALTGEVRPEE--REELW--------------AKKKVFVATPQVVENDLKAGRIDLDDVSLLIFDEAHRAVGNYAYVF 151 (542)
T ss_pred heeeecCCCChHH--HHHHH--------------hhCCEEEeccHHHHhHHhcCccChHHceEEEechhhhccCcchHHH
Confidence 7889998643221 22222 24579999999999985 344455688999999999987655443
Q ss_pred HHH--hhcc-cccEEEEeccCCCCChHHHHHHhhhhCCCCC----CChhHHHHH-------hccccchHHHHHHHHhhhh
Q 042857 910 SLL--NSFS-FQHRVLLTGTPLQNNIGEMYNLLNFLQPASF----PSLSSFEEK-------FNDLTTTQKVEELKKLVAP 975 (1404)
Q Consensus 910 ~~L--~~l~-~~~rLLLTGTPlqNnl~EL~sLL~fL~P~~f----~s~~~F~~~-------f~d~~~~~~i~~L~~lL~p 975 (1404)
-+- .... ..+.|+||||| .++.+.+...++=|.-... ....+.... +-...-...+.++.++|+.
T Consensus 152 Va~~y~~~~k~~~ilgLTASP-Gs~~ekI~eV~~nLgIe~vevrTE~d~DV~~Yv~~~kve~ikV~lp~e~~~ir~~l~~ 230 (542)
T COG1111 152 VAKEYLRSAKNPLILGLTASP-GSDLEKIQEVVENLGIEKVEVRTEEDPDVRPYVKKIKVEWIKVDLPEEIKEIRDLLRD 230 (542)
T ss_pred HHHHHHHhccCceEEEEecCC-CCCHHHHHHHHHhCCcceEEEecCCCccHHHhhccceeEEEeccCcHHHHHHHHHHHH
Confidence 322 2223 44678899999 4555555555554432211 000111111 1111222333444444443
Q ss_pred hhhhhhHhhhhhcCCCceEEEEEecCCH-HHHHHHHHHHHHHHHHHHhhccch-------------------------hh
Q 042857 976 HMLRRLKKDAMQNIPPKTERMVPVELSS-IQAEYYRAMLTKNYQILRNIGKGV-------------------------AQ 1029 (1404)
Q Consensus 976 ~mLRR~K~dV~~~LPpk~e~iV~V~LS~-~Qk~~Y~~il~~n~~~L~~~~kg~-------------------------~~ 1029 (1404)
.+-.|++.-....+ ...-++ .++.+.... ..+.. .. ..... ..
T Consensus 231 ~l~~~Lk~L~~~g~--------~~~~~~~~~kdl~~~~-~~~~~-~a-~~~~~~~~~~l~~~a~~~kl~~a~elletqGi 299 (542)
T COG1111 231 ALKPRLKPLKELGV--------IESSSPVSKKDLLELR-QIRLI-MA-KNEDSDKFRLLSVLAEAIKLAHALELLETQGI 299 (542)
T ss_pred HHHHHHHHHHHcCc--------eeccCcccHhHHHHHH-HHHHH-hc-cCccHHHHHHHHHHHHHHHHHHHHHHHHhhCh
Confidence 33333332111111 111111 122222111 00000 00 00000 00
Q ss_pred HHHHHHHHHHHHHhCCCCCCCCCCCCCCcHH--HHHHHH------HhhhhHHHHHHHHHHHHH--HcCCeEEEEecchhH
Q 042857 1030 QSMLNIVMQLRKVCNHPYLIPGTEPDSGSVE--FLHEMR------IKASAKLTLLHSMLKVLY--KEGHRVLIFSQMTKL 1099 (1404)
Q Consensus 1030 ~sllnilm~LRK~cnHP~L~~~~e~~~~~~e--~l~~~~------i~~SgKl~~L~kLL~kl~--~~G~KVLIFSq~~~~ 1099 (1404)
..+.+.+.+|..-+.- -....+..--.... ....+. --..+||..|.++|.+.. ..+.|||||++|+.+
T Consensus 300 ~~~~~Yl~~l~e~~~~-~~sk~a~~l~~d~~~~~al~~~~~~~~~~v~HPKl~~l~eilke~~~k~~~~RvIVFT~yRdT 378 (542)
T COG1111 300 RPFYQYLEKLEEEATK-GGSKAAKSLLADPYFKRALRLLIRADESGVEHPKLEKLREILKEQLEKNGDSRVIVFTEYRDT 378 (542)
T ss_pred HHHHHHHHHHHHHhcc-cchHHHHHHhcChhhHHHHHHHHHhccccCCCccHHHHHHHHHHHHhcCCCceEEEEehhHhH
Confidence 1122222222222211 00000000000000 000011 123689999999999887 457899999999999
Q ss_pred HHHHHHHHhhhcCCceEEEEeC--------CCCHHHHHHHHHHHhcCCCceEEEeecccccccccccCCCEEEEEcCCCC
Q 042857 1100 LDILEDYLNIEFGPKTYERVDG--------SVSVGDRQAAITRFNQDKSRFVFLLSTRSCGLGINLATADTVIIYDSDFN 1171 (1404)
Q Consensus 1100 LDiLed~L~~~f~g~~y~rLdG--------s~s~~eRq~~Id~Fn~~~s~~VfLLSTrAgG~GINL~~AdtVIi~DsdWN 1171 (1404)
.+.|.+||...++... .++-| +|++.+..++|+.|+++.-. +|++|..|.+|||++.+|.||+|||.-+
T Consensus 379 ae~i~~~L~~~~~~~~-~rFiGQa~r~~~~GMsQkeQ~eiI~~Fr~Ge~n--VLVaTSVgEEGLDIp~vDlVifYEpvpS 455 (542)
T COG1111 379 AEEIVNFLKKIGIKAR-VRFIGQASREGDKGMSQKEQKEIIDQFRKGEYN--VLVATSVGEEGLDIPEVDLVIFYEPVPS 455 (542)
T ss_pred HHHHHHHHHhcCCcce-eEEeeccccccccccCHHHHHHHHHHHhcCCce--EEEEcccccccCCCCcccEEEEecCCcH
Confidence 9999999998744333 34444 58999999999999876655 8999999999999999999999999999
Q ss_pred HhHHHHHHHhhhccCCCCcEEEEEEeeCCCHHHHHHHHHHHHHh
Q 042857 1172 PHADIQAMNRAHRIGQSKRLLVYRLVVRASVEERILQLAKKKLM 1215 (1404)
Q Consensus 1172 P~~d~QAigRahRiGQ~k~V~VYrLvt~~TvEE~Ilq~a~~Kl~ 1215 (1404)
|-..+||+||.+|- +.=.||-|+++||-||.-+..+.+|..
T Consensus 456 eIR~IQR~GRTGR~---r~Grv~vLvt~gtrdeayy~~s~rke~ 496 (542)
T COG1111 456 EIRSIQRKGRTGRK---RKGRVVVLVTEGTRDEAYYYSSRRKEQ 496 (542)
T ss_pred HHHHHHhhCccccC---CCCeEEEEEecCchHHHHHHHHHHHHH
Confidence 99999999999994 556788899999999999999888864
No 25
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.95 E-value=2.5e-26 Score=278.70 Aligned_cols=363 Identities=22% Similarity=0.265 Sum_probs=269.9
Q ss_pred CCCCCHHHHHHHHHHHHhhccCCcEEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEeCCCC-hHHHHHHHHHHCCCC
Q 042857 753 GGALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLST-MPNWLAEFALWAPNL 831 (1404)
Q Consensus 753 g~~L~pyQlegVnwL~~~~~~~~~~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP~Sl-l~nW~rEf~kw~P~l 831 (1404)
..+|+|||.+++.-+...+...+.+++...+|.|||+.++.++..+. .++|||||... +.||.+.+..++..-
T Consensus 34 ~~~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~~~~~~~------~~~Lvlv~~~~L~~Qw~~~~~~~~~~~ 107 (442)
T COG1061 34 EFELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEAIAELK------RSTLVLVPTKELLDQWAEALKKFLLLN 107 (442)
T ss_pred CCCCcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHHHhc------CCEEEEECcHHHHHHHHHHHHHhcCCc
Confidence 35799999999998888777788999999999999999999988764 24999999875 599998888887432
Q ss_pred -cEEEEecchhHHHHHHHhhhccCCCCccccccCCCCceEEEeeHHHHHhhh--ccccCCCceEEEEccccccCCCccHH
Q 042857 832 -NVVEYHGCAKARAIIRQYEWHASDPDNLNKKTSSYKFNVLLTTYEMILADS--SHLRGVPWEVLVVDEGHRLKNSGSKL 908 (1404)
Q Consensus 832 -~Vvvy~G~~~~R~~ir~~E~~~~~~~~~~~~~~~~kfdVvITTYe~l~~d~--~~L~~i~w~lVIVDEAHrlKN~~Sk~ 908 (1404)
.+..|.|+... .....|+|+||+++.... ..+..-.|++||+||+|++-.. ..
T Consensus 108 ~~~g~~~~~~~~----------------------~~~~~i~vat~qtl~~~~~l~~~~~~~~~liI~DE~Hh~~a~--~~ 163 (442)
T COG1061 108 DEIGIYGGGEKE----------------------LEPAKVTVATVQTLARRQLLDEFLGNEFGLIIFDEVHHLPAP--SY 163 (442)
T ss_pred cccceecCceec----------------------cCCCcEEEEEhHHHhhhhhhhhhcccccCEEEEEccccCCcH--HH
Confidence 34445443211 001579999999999862 3444447999999999999643 33
Q ss_pred HHHHhhccccc-EEEEeccCCCCChHHHHHHhhhhCCCCCCChhHHHHHhccccchHHHHHHHHhhhhhhhhhhHhhhh-
Q 042857 909 FSLLNSFSFQH-RVLLTGTPLQNNIGEMYNLLNFLQPASFPSLSSFEEKFNDLTTTQKVEELKKLVAPHMLRRLKKDAM- 986 (1404)
Q Consensus 909 ~~~L~~l~~~~-rLLLTGTPlqNnl~EL~sLL~fL~P~~f~s~~~F~~~f~d~~~~~~i~~L~~lL~p~mLRR~K~dV~- 986 (1404)
...+..+...+ +|+|||||......... .+...+.|.+......+.+
T Consensus 164 ~~~~~~~~~~~~~LGLTATp~R~D~~~~~-------------------------------~l~~~~g~~vy~~~~~~li~ 212 (442)
T COG1061 164 RRILELLSAAYPRLGLTATPEREDGGRIG-------------------------------DLFDLIGPIVYEVSLKELID 212 (442)
T ss_pred HHHHHhhhcccceeeeccCceeecCCchh-------------------------------HHHHhcCCeEeecCHHHHHh
Confidence 44555566666 99999999644322222 2233333333333333332
Q ss_pred -hcCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCcHHHHHHH
Q 042857 987 -QNIPPKTERMVPVELSSIQAEYYRAMLTKNYQILRNIGKGVAQQSMLNIVMQLRKVCNHPYLIPGTEPDSGSVEFLHEM 1065 (1404)
Q Consensus 987 -~~LPpk~e~iV~V~LS~~Qk~~Y~~il~~n~~~L~~~~kg~~~~sllnilm~LRK~cnHP~L~~~~e~~~~~~e~l~~~ 1065 (1404)
..|.|.....+.+.++......|..........+...+. ... .......
T Consensus 213 ~g~Lap~~~~~i~~~~t~~~~~~~~~~~~~~~~~~~~~~~--------~~~----------------------~~~~~~~ 262 (442)
T COG1061 213 EGYLAPYKYVEIKVTLTEDEEREYAKESARFRELLRARGT--------LRA----------------------ENEARRI 262 (442)
T ss_pred CCCccceEEEEEEeccchHHHHHhhhhhhhhhhhhhhhhh--------hhH----------------------HHHHHHH
Confidence 358889999999999999988888776665544432211 000 0111122
Q ss_pred HHhhhhHHHHHHHHHHHHHHcCCeEEEEecchhHHHHHHHHHhhhcCCceEEEEeCCCCHHHHHHHHHHHhcCCCceEEE
Q 042857 1066 RIKASAKLTLLHSMLKVLYKEGHRVLIFSQMTKLLDILEDYLNIEFGPKTYERVDGSVSVGDRQAAITRFNQDKSRFVFL 1145 (1404)
Q Consensus 1066 ~i~~SgKl~~L~kLL~kl~~~G~KVLIFSq~~~~LDiLed~L~~~f~g~~y~rLdGs~s~~eRq~~Id~Fn~~~s~~VfL 1145 (1404)
......|+..+..++.... .+.+++||++.....+.|...|... +. ...++|.++..+|.++++.|..++ +.+|
T Consensus 263 ~~~~~~~~~~~~~~~~~~~-~~~~~lif~~~~~~a~~i~~~~~~~--~~-~~~it~~t~~~eR~~il~~fr~g~--~~~l 336 (442)
T COG1061 263 AIASERKIAAVRGLLLKHA-RGDKTLIFASDVEHAYEIAKLFLAP--GI-VEAITGETPKEEREAILERFRTGG--IKVL 336 (442)
T ss_pred hhccHHHHHHHHHHHHHhc-CCCcEEEEeccHHHHHHHHHHhcCC--Cc-eEEEECCCCHHHHHHHHHHHHcCC--CCEE
Confidence 2345678888888888776 8999999999999999999999764 45 889999999999999999999866 5689
Q ss_pred eecccccccccccCCCEEEEEcCCCCHhHHHHHHHhhhcc-CCCCc--EEEEEEeeCCCHHHHHHHHHHH
Q 042857 1146 LSTRSCGLGINLATADTVIIYDSDFNPHADIQAMNRAHRI-GQSKR--LLVYRLVVRASVEERILQLAKK 1212 (1404)
Q Consensus 1146 LSTrAgG~GINL~~AdtVIi~DsdWNP~~d~QAigRahRi-GQ~k~--V~VYrLvt~~TvEE~Ilq~a~~ 1212 (1404)
++++.+.+|+|++.|+++|+..+.-++..++|++||+.|. ..++. +..|-+++..+.+..+......
T Consensus 337 v~~~vl~EGvDiP~~~~~i~~~~t~S~~~~~Q~lGR~LR~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (442)
T COG1061 337 VTVKVLDEGVDIPDADVLIILRPTGSRRLFIQRLGRGLRPAEGKEDTLALDYSLVPDDLGEEDIARRRRL 406 (442)
T ss_pred EEeeeccceecCCCCcEEEEeCCCCcHHHHHHHhhhhccCCCCCCceEEEEEEeecCcccccchhhhhhh
Confidence 9999999999999999999999999999999999999994 44444 7788888888888877665443
No 26
>PHA02558 uvsW UvsW helicase; Provisional
Probab=99.95 E-value=9.4e-26 Score=278.26 Aligned_cols=339 Identities=15% Similarity=0.173 Sum_probs=228.9
Q ss_pred CCCCCHHHHHHHHHHHHhhccCCcEEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEeCCC-ChHHHHHHHHHHC--C
Q 042857 753 GGALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLS-TMPNWLAEFALWA--P 829 (1404)
Q Consensus 753 g~~L~pyQlegVnwL~~~~~~~~~~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP~S-ll~nW~rEf~kw~--P 829 (1404)
.+.|+|||.+++..++. +.++||...+|.|||++++.++..+... ..+++||+||.. ++.||.++|.+|. |
T Consensus 112 ~~~~r~~Q~~av~~~l~----~~~~il~apTGsGKT~i~~~l~~~~~~~--~~~~vLilvpt~eL~~Q~~~~l~~~~~~~ 185 (501)
T PHA02558 112 KIEPHWYQYDAVYEGLK----NNRRLLNLPTSAGKSLIQYLLSRYYLEN--YEGKVLIIVPTTSLVTQMIDDFVDYRLFP 185 (501)
T ss_pred cCCCCHHHHHHHHHHHh----cCceEEEeCCCCCHHHHHHHHHHHHHhc--CCCeEEEEECcHHHHHHHHHHHHHhcccc
Confidence 46899999999976655 6778999999999999887665544432 234899999985 5699999999986 3
Q ss_pred CCcE-EEEecchhHHHHHHHhhhccCCCCccccccCCCCceEEEeeHHHHHhhhccccCCCceEEEEccccccCCCccHH
Q 042857 830 NLNV-VEYHGCAKARAIIRQYEWHASDPDNLNKKTSSYKFNVLLTTYEMILADSSHLRGVPWEVLVVDEGHRLKNSGSKL 908 (1404)
Q Consensus 830 ~l~V-vvy~G~~~~R~~ir~~E~~~~~~~~~~~~~~~~kfdVvITTYe~l~~d~~~L~~i~w~lVIVDEAHrlKN~~Sk~ 908 (1404)
...+ .++.|... ....+|+|+|++.+.+....+ --+|++|||||||++.. ...
T Consensus 186 ~~~~~~i~~g~~~-----------------------~~~~~I~VaT~qsl~~~~~~~-~~~~~~iIvDEaH~~~~--~~~ 239 (501)
T PHA02558 186 REAMHKIYSGTAK-----------------------DTDAPIVVSTWQSAVKQPKEW-FDQFGMVIVDECHLFTG--KSL 239 (501)
T ss_pred ccceeEEecCccc-----------------------CCCCCEEEeeHHHHhhchhhh-ccccCEEEEEchhcccc--hhH
Confidence 3333 23333211 124589999999987644221 13688999999999974 235
Q ss_pred HHHHhhc-ccccEEEEeccCCCCChHHHHHHhhhhCCCCCCChhHHHHHhccccchHHHHHHHHhhhhhhhhhhHhhhhh
Q 042857 909 FSLLNSF-SFQHRVLLTGTPLQNNIGEMYNLLNFLQPASFPSLSSFEEKFNDLTTTQKVEELKKLVAPHMLRRLKKDAMQ 987 (1404)
Q Consensus 909 ~~~L~~l-~~~~rLLLTGTPlqNnl~EL~sLL~fL~P~~f~s~~~F~~~f~d~~~~~~i~~L~~lL~p~mLRR~K~dV~~ 987 (1404)
...+..+ .+.++++|||||...... .+.+..++.|-... .. .. +++ + ..
T Consensus 240 ~~il~~~~~~~~~lGLTATp~~~~~~-~~~~~~~fG~i~~~-----------v~----~~---~li---------~--~g 289 (501)
T PHA02558 240 TSIITKLDNCKFKFGLTGSLRDGKAN-ILQYVGLFGDIFKP-----------VT----TS---QLM---------E--EG 289 (501)
T ss_pred HHHHHhhhccceEEEEeccCCCcccc-HHHHHHhhCCceEE-----------ec----HH---HHH---------h--CC
Confidence 5666677 577899999999543221 11122222221100 00 00 000 0 01
Q ss_pred cCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCcHHHHHHHHH
Q 042857 988 NIPPKTERMVPVELSSIQAEYYRAMLTKNYQILRNIGKGVAQQSMLNIVMQLRKVCNHPYLIPGTEPDSGSVEFLHEMRI 1067 (1404)
Q Consensus 988 ~LPpk~e~iV~V~LS~~Qk~~Y~~il~~n~~~L~~~~kg~~~~sllnilm~LRK~cnHP~L~~~~e~~~~~~e~l~~~~i 1067 (1404)
.+.+.....+.+..++.....+. +..-... + ....
T Consensus 290 ~l~~~~~~~v~~~~~~~~~~~~~---------------~~~~~~~------~------------------------~~l~ 324 (501)
T PHA02558 290 QVTDLKINSIFLRYPDEDRVKLK---------------GEDYQEE------I------------------------KYIT 324 (501)
T ss_pred CcCCceEEEEeccCCHHHhhhhc---------------ccchHHH------H------------------------HHHh
Confidence 12233333444444432111000 0000000 0 0112
Q ss_pred hhhhHHHHHHHHHHHHHHcCCeEEEEecchhHHHHHHHHHhhhcCCceEEEEeCCCCHHHHHHHHHHHhcCCCceEEEee
Q 042857 1068 KASAKLTLLHSMLKVLYKEGHRVLIFSQMTKLLDILEDYLNIEFGPKTYERVDGSVSVGDRQAAITRFNQDKSRFVFLLS 1147 (1404)
Q Consensus 1068 ~~SgKl~~L~kLL~kl~~~G~KVLIFSq~~~~LDiLed~L~~~f~g~~y~rLdGs~s~~eRq~~Id~Fn~~~s~~VfLLS 1147 (1404)
....+..++.+++..+...|+++|||+..+..++.|.+.|... +..+..++|+++..+|..+++.|+.+ ...++|.|
T Consensus 325 ~~~~Rn~~I~~~~~~~~~~~~~~lV~~~~~~h~~~L~~~L~~~--g~~v~~i~G~~~~~eR~~i~~~~~~~-~~~vLvaT 401 (501)
T PHA02558 325 SHTKRNKWIANLALKLAKKGENTFVMFKYVEHGKPLYEMLKKV--YDKVYYVSGEVDTEDRNEMKKIAEGG-KGIIIVAS 401 (501)
T ss_pred ccHHHHHHHHHHHHHHHhcCCCEEEEEEEHHHHHHHHHHHHHc--CCCEEEEeCCCCHHHHHHHHHHHhCC-CCeEEEEE
Confidence 2345666777777777788999999999999999999999976 77899999999999999999999753 33455555
Q ss_pred cccccccccccCCCEEEEEcCCCCHhHHHHHHHhhhccCCCC-cEEEEEEeeCCC
Q 042857 1148 TRSCGLGINLATADTVIIYDSDFNPHADIQAMNRAHRIGQSK-RLLVYRLVVRAS 1201 (1404)
Q Consensus 1148 TrAgG~GINL~~AdtVIi~DsdWNP~~d~QAigRahRiGQ~k-~V~VYrLvt~~T 1201 (1404)
++..|+|+|++.+|+||+++|..+...++|++||++|.|..| .+.||.++-.-.
T Consensus 402 ~~~l~eG~Dip~ld~vIl~~p~~s~~~~~QriGR~~R~~~~K~~~~i~D~vD~~~ 456 (501)
T PHA02558 402 YGVFSTGISIKNLHHVIFAHPSKSKIIVLQSIGRVLRKHGSKSIATVWDIIDDLS 456 (501)
T ss_pred cceeccccccccccEEEEecCCcchhhhhhhhhccccCCCCCceEEEEEeecccc
Confidence 599999999999999999999999999999999999998755 589999987544
No 27
>PTZ00110 helicase; Provisional
Probab=99.92 E-value=3.1e-23 Score=258.09 Aligned_cols=320 Identities=17% Similarity=0.213 Sum_probs=217.0
Q ss_pred CCCHHHHHHHHHHHHhhccCCcEEEEcCCCchHHHHHHHHH-HHHHhhc---cCCC-cEEEEeCCCCh-HHHHHHHHHHC
Q 042857 755 ALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFI-SSLYCEF---KAKL-PCLVLVPLSTM-PNWLAEFALWA 828 (1404)
Q Consensus 755 ~L~pyQlegVnwL~~~~~~~~~~ILADEMGLGKTiqaIa~L-~~L~~~~---~~~g-P~LIVvP~Sll-~nW~rEf~kw~ 828 (1404)
.++|+|..++..++. ++++|+..++|.|||++++..+ ..+.... ...+ .+|||||+..| .|+..++.++.
T Consensus 152 ~pt~iQ~~aip~~l~----G~dvI~~ApTGSGKTlaylLP~l~~i~~~~~~~~~~gp~~LIL~PTreLa~Qi~~~~~~~~ 227 (545)
T PTZ00110 152 EPTPIQVQGWPIALS----GRDMIGIAETGSGKTLAFLLPAIVHINAQPLLRYGDGPIVLVLAPTRELAEQIREQCNKFG 227 (545)
T ss_pred CCCHHHHHHHHHHhc----CCCEEEEeCCCChHHHHHHHHHHHHHHhcccccCCCCcEEEEECChHHHHHHHHHHHHHHh
Confidence 589999999877665 8999999999999999876443 3332211 1122 37999998755 78999999987
Q ss_pred C--CCcEEEEecchhHHHHHHHhhhccCCCCccccccCCCCceEEEeeHHHHHhhhc--cccCCCceEEEEccccccCCC
Q 042857 829 P--NLNVVEYHGCAKARAIIRQYEWHASDPDNLNKKTSSYKFNVLLTTYEMILADSS--HLRGVPWEVLVVDEGHRLKNS 904 (1404)
Q Consensus 829 P--~l~Vvvy~G~~~~R~~ir~~E~~~~~~~~~~~~~~~~kfdVvITTYe~l~~d~~--~L~~i~w~lVIVDEAHrlKN~ 904 (1404)
. .+++++.+|............ ...+|+|+|++.+..... .+.--.+.+|||||||++...
T Consensus 228 ~~~~i~~~~~~gg~~~~~q~~~l~---------------~~~~IlVaTPgrL~d~l~~~~~~l~~v~~lViDEAd~mld~ 292 (545)
T PTZ00110 228 ASSKIRNTVAYGGVPKRGQIYALR---------------RGVEILIACPGRLIDFLESNVTNLRRVTYLVLDEADRMLDM 292 (545)
T ss_pred cccCccEEEEeCCCCHHHHHHHHH---------------cCCCEEEECHHHHHHHHHcCCCChhhCcEEEeehHHhhhhc
Confidence 4 466666666655444333321 246899999988865422 122234679999999999764
Q ss_pred c--cHHHHHHhhcccc-cEEEEeccCCCCChHHHHHHhhhhCCCCCCChhHHHHHhccccchHHHHHHHHhhhhhhhhhh
Q 042857 905 G--SKLFSLLNSFSFQ-HRVLLTGTPLQNNIGEMYNLLNFLQPASFPSLSSFEEKFNDLTTTQKVEELKKLVAPHMLRRL 981 (1404)
Q Consensus 905 ~--Sk~~~~L~~l~~~-~rLLLTGTPlqNnl~EL~sLL~fL~P~~f~s~~~F~~~f~d~~~~~~i~~L~~lL~p~mLRR~ 981 (1404)
+ ..+...+..+... ..+++|||.- .++..+...+ +.
T Consensus 293 gf~~~i~~il~~~~~~~q~l~~SAT~p----~~v~~l~~~l------------------------------~~------- 331 (545)
T PTZ00110 293 GFEPQIRKIVSQIRPDRQTLMWSATWP----KEVQSLARDL------------------------------CK------- 331 (545)
T ss_pred chHHHHHHHHHhCCCCCeEEEEEeCCC----HHHHHHHHHH------------------------------hc-------
Confidence 3 2345555556433 4578999951 1211111110 00
Q ss_pred HhhhhhcCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCcHHH
Q 042857 982 KKDAMQNIPPKTERMVPVELSSIQAEYYRAMLTKNYQILRNIGKGVAQQSMLNIVMQLRKVCNHPYLIPGTEPDSGSVEF 1061 (1404)
Q Consensus 982 K~dV~~~LPpk~e~iV~V~LS~~Qk~~Y~~il~~n~~~L~~~~kg~~~~sllnilm~LRK~cnHP~L~~~~e~~~~~~e~ 1061 (1404)
..| ..+.+.... ...+. . +++. .+.
T Consensus 332 ------~~~----v~i~vg~~~--l~~~~---------------~------------i~q~---~~~------------- 356 (545)
T PTZ00110 332 ------EEP----VHVNVGSLD--LTACH---------------N------------IKQE---VFV------------- 356 (545)
T ss_pred ------cCC----EEEEECCCc--cccCC---------------C------------eeEE---EEE-------------
Confidence 000 000000000 00000 0 0000 000
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHcCCeEEEEecchhHHHHHHHHHhhhcCCceEEEEeCCCCHHHHHHHHHHHhcCCCc
Q 042857 1062 LHEMRIKASAKLTLLHSMLKVLYKEGHRVLIFSQMTKLLDILEDYLNIEFGPKTYERVDGSVSVGDRQAAITRFNQDKSR 1141 (1404)
Q Consensus 1062 l~~~~i~~SgKl~~L~kLL~kl~~~G~KVLIFSq~~~~LDiLed~L~~~f~g~~y~rLdGs~s~~eRq~~Id~Fn~~~s~ 1141 (1404)
+....|...|..+|..+...+.++|||++....++.|...|... ++....+||.+++.+|..+++.|+.+...
T Consensus 357 -----~~~~~k~~~L~~ll~~~~~~~~k~LIF~~t~~~a~~l~~~L~~~--g~~~~~ihg~~~~~eR~~il~~F~~G~~~ 429 (545)
T PTZ00110 357 -----VEEHEKRGKLKMLLQRIMRDGDKILIFVETKKGADFLTKELRLD--GWPALCIHGDKKQEERTWVLNEFKTGKSP 429 (545)
T ss_pred -----EechhHHHHHHHHHHHhcccCCeEEEEecChHHHHHHHHHHHHc--CCcEEEEECCCcHHHHHHHHHHHhcCCCc
Confidence 01123555566667666667889999999999999999999865 78889999999999999999999876655
Q ss_pred eEEEeecccccccccccCCCEEEEEcCCCCHhHHHHHHHhhhccCCCCcEEEEEEeeCC
Q 042857 1142 FVFLLSTRSCGLGINLATADTVIIYDSDFNPHADIQAMNRAHRIGQSKRLLVYRLVVRA 1200 (1404)
Q Consensus 1142 ~VfLLSTrAgG~GINL~~AdtVIi~DsdWNP~~d~QAigRahRiGQ~k~V~VYrLvt~~ 1200 (1404)
+|++|.++++|||++.+++||+||+++++..++|++||++|.|.+..+ |.|++.+
T Consensus 430 --ILVaTdv~~rGIDi~~v~~VI~~d~P~s~~~yvqRiGRtGR~G~~G~a--i~~~~~~ 484 (545)
T PTZ00110 430 --IMIATDVASRGLDVKDVKYVINFDFPNQIEDYVHRIGRTGRAGAKGAS--YTFLTPD 484 (545)
T ss_pred --EEEEcchhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceE--EEEECcc
Confidence 899999999999999999999999999999999999999999986554 5566664
No 28
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=99.92 E-value=6.9e-23 Score=253.88 Aligned_cols=316 Identities=18% Similarity=0.219 Sum_probs=211.9
Q ss_pred CCCHHHHHHHHHHHHhhccCCcEEEEcCCCchHHHHHHHHHHHHHhhc-------cCCCcEEEEeCCCCh-HHHHHHHHH
Q 042857 755 ALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEF-------KAKLPCLVLVPLSTM-PNWLAEFAL 826 (1404)
Q Consensus 755 ~L~pyQlegVnwL~~~~~~~~~~ILADEMGLGKTiqaIa~L~~L~~~~-------~~~gP~LIVvP~Sll-~nW~rEf~k 826 (1404)
.++|+|.+++..++. ++++|+..++|.|||+.++..+....... .....+|||+|+..| .|+.+++..
T Consensus 143 ~ptpiQ~~aip~il~----g~dviv~ApTGSGKTlayllPil~~l~~~~~~~~~~~~~~~aLIL~PTreLa~Qi~~~~~~ 218 (518)
T PLN00206 143 FPTPIQMQAIPAALS----GRSLLVSADTGSGKTASFLVPIISRCCTIRSGHPSEQRNPLAMVLTPTRELCVQVEDQAKV 218 (518)
T ss_pred CCCHHHHHHHHHHhc----CCCEEEEecCCCCccHHHHHHHHHHHHhhccccccccCCceEEEEeCCHHHHHHHHHHHHH
Confidence 699999999988764 89999999999999998876654332211 123458999998755 788888888
Q ss_pred HCCC--CcEEEEecchhHHHHHHHhhhccCCCCccccccCCCCceEEEeeHHHHHhhhc--cccCCCceEEEEccccccC
Q 042857 827 WAPN--LNVVEYHGCAKARAIIRQYEWHASDPDNLNKKTSSYKFNVLLTTYEMILADSS--HLRGVPWEVLVVDEGHRLK 902 (1404)
Q Consensus 827 w~P~--l~Vvvy~G~~~~R~~ir~~E~~~~~~~~~~~~~~~~kfdVvITTYe~l~~d~~--~L~~i~w~lVIVDEAHrlK 902 (1404)
+... ++++.+.|+......+... ...++|+|+|++.+..... .+.--...+|||||||+|.
T Consensus 219 l~~~~~~~~~~~~gG~~~~~q~~~l---------------~~~~~IiV~TPgrL~~~l~~~~~~l~~v~~lViDEad~ml 283 (518)
T PLN00206 219 LGKGLPFKTALVVGGDAMPQQLYRI---------------QQGVELIVGTPGRLIDLLSKHDIELDNVSVLVLDEVDCML 283 (518)
T ss_pred HhCCCCceEEEEECCcchHHHHHHh---------------cCCCCEEEECHHHHHHHHHcCCccchheeEEEeecHHHHh
Confidence 8643 4555555544333222211 1246899999998765321 2223356799999999986
Q ss_pred CCc--cHHHHHHhhcccccEEEEeccCCCCChHHHHHHhhhhCCCCCCChhHHHHHhccccchHHHHHHHHhhhhhhhhh
Q 042857 903 NSG--SKLFSLLNSFSFQHRVLLTGTPLQNNIGEMYNLLNFLQPASFPSLSSFEEKFNDLTTTQKVEELKKLVAPHMLRR 980 (1404)
Q Consensus 903 N~~--Sk~~~~L~~l~~~~rLLLTGTPlqNnl~EL~sLL~fL~P~~f~s~~~F~~~f~d~~~~~~i~~L~~lL~p~mLRR 980 (1404)
..+ ..+...+..+.....+++|||.-. ++-.+...+.... ..+..
T Consensus 284 ~~gf~~~i~~i~~~l~~~q~l~~SATl~~----~v~~l~~~~~~~~-----------------------------~~i~~ 330 (518)
T PLN00206 284 ERGFRDQVMQIFQALSQPQVLLFSATVSP----EVEKFASSLAKDI-----------------------------ILISI 330 (518)
T ss_pred hcchHHHHHHHHHhCCCCcEEEEEeeCCH----HHHHHHHHhCCCC-----------------------------EEEEe
Confidence 543 345566666777788999999621 1111111111000 00000
Q ss_pred hHhhhhhcCCCc--eEEEEEecCCHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCc
Q 042857 981 LKKDAMQNIPPK--TERMVPVELSSIQAEYYRAMLTKNYQILRNIGKGVAQQSMLNIVMQLRKVCNHPYLIPGTEPDSGS 1058 (1404)
Q Consensus 981 ~K~dV~~~LPpk--~e~iV~V~LS~~Qk~~Y~~il~~n~~~L~~~~kg~~~~sllnilm~LRK~cnHP~L~~~~e~~~~~ 1058 (1404)
.. ...|.. ....+.++
T Consensus 331 ~~----~~~~~~~v~q~~~~~~---------------------------------------------------------- 348 (518)
T PLN00206 331 GN----PNRPNKAVKQLAIWVE---------------------------------------------------------- 348 (518)
T ss_pred CC----CCCCCcceeEEEEecc----------------------------------------------------------
Confidence 00 000000 01111111
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHcCCeEEEEecchhHHHHHHHHHhhhcCCceEEEEeCCCCHHHHHHHHHHHhcC
Q 042857 1059 VEFLHEMRIKASAKLTLLHSMLKVLYKEGHRVLIFSQMTKLLDILEDYLNIEFGPKTYERVDGSVSVGDRQAAITRFNQD 1138 (1404)
Q Consensus 1059 ~e~l~~~~i~~SgKl~~L~kLL~kl~~~G~KVLIFSq~~~~LDiLed~L~~~f~g~~y~rLdGs~s~~eRq~~Id~Fn~~ 1138 (1404)
...|...|..+|........++|||++.....+.|..+|... .++.+..+||.++..+|..+++.|.++
T Consensus 349 ----------~~~k~~~l~~~l~~~~~~~~~~iVFv~s~~~a~~l~~~L~~~-~g~~~~~~Hg~~~~~eR~~il~~Fr~G 417 (518)
T PLN00206 349 ----------TKQKKQKLFDILKSKQHFKPPAVVFVSSRLGADLLANAITVV-TGLKALSIHGEKSMKERREVMKSFLVG 417 (518)
T ss_pred ----------chhHHHHHHHHHHhhcccCCCEEEEcCCchhHHHHHHHHhhc-cCcceEEeeCCCCHHHHHHHHHHHHCC
Confidence 011222333444433333468999999999999999999753 378889999999999999999999876
Q ss_pred CCceEEEeecccccccccccCCCEEEEEcCCCCHhHHHHHHHhhhccCCCCcEEEEEEeeC
Q 042857 1139 KSRFVFLLSTRSCGLGINLATADTVIIYDSDFNPHADIQAMNRAHRIGQSKRLLVYRLVVR 1199 (1404)
Q Consensus 1139 ~s~~VfLLSTrAgG~GINL~~AdtVIi~DsdWNP~~d~QAigRahRiGQ~k~V~VYrLvt~ 1199 (1404)
... +|++|.++++|||++.+++||+||++.++..|+|++||++|.|....+ +.|++.
T Consensus 418 ~~~--ILVaTdvl~rGiDip~v~~VI~~d~P~s~~~yihRiGRaGR~g~~G~a--i~f~~~ 474 (518)
T PLN00206 418 EVP--VIVATGVLGRGVDLLRVRQVIIFDMPNTIKEYIHQIGRASRMGEKGTA--IVFVNE 474 (518)
T ss_pred CCC--EEEEecHhhccCCcccCCEEEEeCCCCCHHHHHHhccccccCCCCeEE--EEEEch
Confidence 655 899999999999999999999999999999999999999999975544 445554
No 29
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=99.92 E-value=2.8e-22 Score=253.59 Aligned_cols=310 Identities=16% Similarity=0.257 Sum_probs=209.4
Q ss_pred CCCCHHHHHHHHHHHHhhccC--CcEEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEeCCCCh-HHHHHHHHHHCC-
Q 042857 754 GALFPHQLEALNWLRKCWHKS--KNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLSTM-PNWLAEFALWAP- 829 (1404)
Q Consensus 754 ~~L~pyQlegVnwL~~~~~~~--~~~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP~Sll-~nW~rEf~kw~P- 829 (1404)
.+|.++|.+++..+...+... .+.+|..++|.|||+.++..+...... ...+||++|+..| .||.++|.+|++
T Consensus 234 f~lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~~~---g~qvlilaPT~~LA~Q~~~~~~~l~~~ 310 (630)
T TIGR00643 234 FKLTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIEA---GYQVALMAPTEILAEQHYNSLRNLLAP 310 (630)
T ss_pred CCCCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHHHc---CCcEEEECCHHHHHHHHHHHHHHHhcc
Confidence 479999999999998865433 478999999999999887666555432 3469999999766 899999999987
Q ss_pred -CCcEEEEecchhHHHHHHHhhhccCCCCccccccCCCCceEEEeeHHHHHhhhccccCCCceEEEEccccccCCCccHH
Q 042857 830 -NLNVVEYHGCAKARAIIRQYEWHASDPDNLNKKTSSYKFNVLLTTYEMILADSSHLRGVPWEVLVVDEGHRLKNSGSKL 908 (1404)
Q Consensus 830 -~l~Vvvy~G~~~~R~~ir~~E~~~~~~~~~~~~~~~~kfdVvITTYe~l~~d~~~L~~i~w~lVIVDEAHrlKN~~Sk~ 908 (1404)
++++.+++|+..........+ .......+|+|+|+..+..... + .+.++|||||+|++.- .+.
T Consensus 311 ~gi~v~lltg~~~~~~r~~~~~-----------~i~~g~~~IiVgT~~ll~~~~~-~--~~l~lvVIDEaH~fg~--~qr 374 (630)
T TIGR00643 311 LGIEVALLTGSLKGKRRKELLE-----------TIASGQIHLVVGTHALIQEKVE-F--KRLALVIIDEQHRFGV--EQR 374 (630)
T ss_pred cCcEEEEEecCCCHHHHHHHHH-----------HHhCCCCCEEEecHHHHhcccc-c--cccceEEEechhhccH--HHH
Confidence 588899999755433211111 1123467999999998865322 2 3567999999999732 222
Q ss_pred HHHHhhcc---cccEEEEeccCCCCChHHHHHHhhhhCCCCCCChhHHHHHhccccchHHHHHHHHhhhhhhhhhhHhhh
Q 042857 909 FSLLNSFS---FQHRVLLTGTPLQNNIGEMYNLLNFLQPASFPSLSSFEEKFNDLTTTQKVEELKKLVAPHMLRRLKKDA 985 (1404)
Q Consensus 909 ~~~L~~l~---~~~rLLLTGTPlqNnl~EL~sLL~fL~P~~f~s~~~F~~~f~d~~~~~~i~~L~~lL~p~mLRR~K~dV 985 (1404)
...+.... ..+.|+|||||+...+. +. .|.++.. .+
T Consensus 375 ~~l~~~~~~~~~~~~l~~SATp~prtl~----l~----------------~~~~l~~---------------------~~ 413 (630)
T TIGR00643 375 KKLREKGQGGFTPHVLVMSATPIPRTLA----LT----------------VYGDLDT---------------------SI 413 (630)
T ss_pred HHHHHhcccCCCCCEEEEeCCCCcHHHH----HH----------------hcCCcce---------------------ee
Confidence 22333333 56789999999764332 10 0111000 01
Q ss_pred hhcCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCcHHHHHHH
Q 042857 986 MQNIPPKTERMVPVELSSIQAEYYRAMLTKNYQILRNIGKGVAQQSMLNIVMQLRKVCNHPYLIPGTEPDSGSVEFLHEM 1065 (1404)
Q Consensus 986 ~~~LPpk~e~iV~V~LS~~Qk~~Y~~il~~n~~~L~~~~kg~~~~sllnilm~LRK~cnHP~L~~~~e~~~~~~e~l~~~ 1065 (1404)
...+|+....+...-+....+
T Consensus 414 i~~~p~~r~~i~~~~~~~~~~----------------------------------------------------------- 434 (630)
T TIGR00643 414 IDELPPGRKPITTVLIKHDEK----------------------------------------------------------- 434 (630)
T ss_pred eccCCCCCCceEEEEeCcchH-----------------------------------------------------------
Confidence 112232111110000000000
Q ss_pred HHhhhhHHHHHHHHHHHHHHcCCeEEEEecch--------hHHHHHHHHHhhhcCCceEEEEeCCCCHHHHHHHHHHHhc
Q 042857 1066 RIKASAKLTLLHSMLKVLYKEGHRVLIFSQMT--------KLLDILEDYLNIEFGPKTYERVDGSVSVGDRQAAITRFNQ 1137 (1404)
Q Consensus 1066 ~i~~SgKl~~L~kLL~kl~~~G~KVLIFSq~~--------~~LDiLed~L~~~f~g~~y~rLdGs~s~~eRq~~Id~Fn~ 1137 (1404)
..+...+.+....|++++||+... .....+.+.|...++++.+..+||.++..+|.+++++|.+
T Consensus 435 --------~~~~~~i~~~l~~g~q~~v~~~~i~~s~~~~~~~a~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~ 506 (630)
T TIGR00643 435 --------DIVYEFIEEEIAKGRQAYVVYPLIEESEKLDLKAAEALYERLKKAFPKYNVGLLHGRMKSDEKEAVMEEFRE 506 (630)
T ss_pred --------HHHHHHHHHHHHhCCcEEEEEccccccccchHHHHHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHHc
Confidence 111122223335688899998764 2344556666655678889999999999999999999987
Q ss_pred CCCceEEEeecccccccccccCCCEEEEEcCC-CCHhHHHHHHHhhhccCCCCcEE
Q 042857 1138 DKSRFVFLLSTRSCGLGINLATADTVIIYDSD-FNPHADIQAMNRAHRIGQSKRLL 1192 (1404)
Q Consensus 1138 ~~s~~VfLLSTrAgG~GINL~~AdtVIi~Dsd-WNP~~d~QAigRahRiGQ~k~V~ 1192 (1404)
+... +|++|.+.++|||++.++.||+++++ ++...+.|+.||++|.|....+.
T Consensus 507 g~~~--ILVaT~vie~GvDiP~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~i 560 (630)
T TIGR00643 507 GEVD--ILVATTVIEVGVDVPNATVMVIEDAERFGLSQLHQLRGRVGRGDHQSYCL 560 (630)
T ss_pred CCCC--EEEECceeecCcccCCCcEEEEeCCCcCCHHHHHHHhhhcccCCCCcEEE
Confidence 6655 89999999999999999999999997 47889999999999998755543
No 30
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=99.91 E-value=6.8e-23 Score=250.75 Aligned_cols=315 Identities=20% Similarity=0.297 Sum_probs=219.0
Q ss_pred CCCHHHHHHHHHHHHhhccCCcEEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEeCCCCh-HHHHHHHHHHC---CC
Q 042857 755 ALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLSTM-PNWLAEFALWA---PN 830 (1404)
Q Consensus 755 ~L~pyQlegVnwL~~~~~~~~~~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP~Sll-~nW~rEf~kw~---P~ 830 (1404)
.+.|+|.+++..++. +.+.|+..++|.|||..++..+...+........+||+||...+ .||.+++..++ ++
T Consensus 26 ~~t~iQ~~ai~~~l~----g~dvi~~a~TGsGKT~a~~lpil~~l~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~ 101 (460)
T PRK11776 26 EMTPIQAQSLPAILA----GKDVIAQAKTGSGKTAAFGLGLLQKLDVKRFRVQALVLCPTRELADQVAKEIRRLARFIPN 101 (460)
T ss_pred CCCHHHHHHHHHHhc----CCCEEEECCCCCcHHHHHHHHHHHHhhhccCCceEEEEeCCHHHHHHHHHHHHHHHhhCCC
Confidence 588999999998765 88999999999999988766665554333323358999998755 89999988774 57
Q ss_pred CcEEEEecchhHHHHHHHhhhccCCCCccccccCCCCceEEEeeHHHHHhhhc--cccCCCceEEEEccccccCCCc--c
Q 042857 831 LNVVEYHGCAKARAIIRQYEWHASDPDNLNKKTSSYKFNVLLTTYEMILADSS--HLRGVPWEVLVVDEGHRLKNSG--S 906 (1404)
Q Consensus 831 l~Vvvy~G~~~~R~~ir~~E~~~~~~~~~~~~~~~~kfdVvITTYe~l~~d~~--~L~~i~w~lVIVDEAHrlKN~~--S 906 (1404)
+++..++|+......+.... ...+|+|+|++.+..... .+.--.+++||+||||++-..+ .
T Consensus 102 ~~v~~~~Gg~~~~~~~~~l~---------------~~~~IvV~Tp~rl~~~l~~~~~~l~~l~~lViDEad~~l~~g~~~ 166 (460)
T PRK11776 102 IKVLTLCGGVPMGPQIDSLE---------------HGAHIIVGTPGRILDHLRKGTLDLDALNTLVLDEADRMLDMGFQD 166 (460)
T ss_pred cEEEEEECCCChHHHHHHhc---------------CCCCEEEEChHHHHHHHHcCCccHHHCCEEEEECHHHHhCcCcHH
Confidence 88888998776554443321 256899999999876432 2222357899999999986543 3
Q ss_pred HHHHHHhhcccc-cEEEEeccCCCCChHHHHHHhhhhCCCCCCChhHHHHHhccccchHHHHHHHHhhhhhhhhhhHhhh
Q 042857 907 KLFSLLNSFSFQ-HRVLLTGTPLQNNIGEMYNLLNFLQPASFPSLSSFEEKFNDLTTTQKVEELKKLVAPHMLRRLKKDA 985 (1404)
Q Consensus 907 k~~~~L~~l~~~-~rLLLTGTPlqNnl~EL~sLL~fL~P~~f~s~~~F~~~f~d~~~~~~i~~L~~lL~p~mLRR~K~dV 985 (1404)
.+...+..+... ..+++|||+-. ++..+...+.. .|..+.- ..
T Consensus 167 ~l~~i~~~~~~~~q~ll~SAT~~~----~~~~l~~~~~~-----------------------------~~~~i~~---~~ 210 (460)
T PRK11776 167 AIDAIIRQAPARRQTLLFSATYPE----GIAAISQRFQR-----------------------------DPVEVKV---ES 210 (460)
T ss_pred HHHHHHHhCCcccEEEEEEecCcH----HHHHHHHHhcC-----------------------------CCEEEEE---Cc
Confidence 344555555433 45889999721 11111110000 0000000 00
Q ss_pred hhcCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCcHHHHHHH
Q 042857 986 MQNIPPKTERMVPVELSSIQAEYYRAMLTKNYQILRNIGKGVAQQSMLNIVMQLRKVCNHPYLIPGTEPDSGSVEFLHEM 1065 (1404)
Q Consensus 986 ~~~LPpk~e~iV~V~LS~~Qk~~Y~~il~~n~~~L~~~~kg~~~~sllnilm~LRK~cnHP~L~~~~e~~~~~~e~l~~~ 1065 (1404)
....+......+.+.
T Consensus 211 ~~~~~~i~~~~~~~~----------------------------------------------------------------- 225 (460)
T PRK11776 211 THDLPAIEQRFYEVS----------------------------------------------------------------- 225 (460)
T ss_pred CCCCCCeeEEEEEeC-----------------------------------------------------------------
Confidence 000011111111100
Q ss_pred HHhhhhHHHHHHHHHHHHHHcCCeEEEEecchhHHHHHHHHHhhhcCCceEEEEeCCCCHHHHHHHHHHHhcCCCceEEE
Q 042857 1066 RIKASAKLTLLHSMLKVLYKEGHRVLIFSQMTKLLDILEDYLNIEFGPKTYERVDGSVSVGDRQAAITRFNQDKSRFVFL 1145 (1404)
Q Consensus 1066 ~i~~SgKl~~L~kLL~kl~~~G~KVLIFSq~~~~LDiLed~L~~~f~g~~y~rLdGs~s~~eRq~~Id~Fn~~~s~~VfL 1145 (1404)
...|+..|..+|.. ..+.++|||++.....+.|..+|... ++.+..+||.+++.+|+.+++.|.++... +|
T Consensus 226 ---~~~k~~~l~~ll~~--~~~~~~lVF~~t~~~~~~l~~~L~~~--~~~v~~~hg~~~~~eR~~~l~~F~~g~~~--vL 296 (460)
T PRK11776 226 ---PDERLPALQRLLLH--HQPESCVVFCNTKKECQEVADALNAQ--GFSALALHGDLEQRDRDQVLVRFANRSCS--VL 296 (460)
T ss_pred ---cHHHHHHHHHHHHh--cCCCceEEEECCHHHHHHHHHHHHhC--CCcEEEEeCCCCHHHHHHHHHHHHcCCCc--EE
Confidence 11244555555543 24568999999999999999999876 78899999999999999999999876655 89
Q ss_pred eecccccccccccCCCEEEEEcCCCCHhHHHHHHHhhhccCCCCcEEEEEEeeCC
Q 042857 1146 LSTRSCGLGINLATADTVIIYDSDFNPHADIQAMNRAHRIGQSKRLLVYRLVVRA 1200 (1404)
Q Consensus 1146 LSTrAgG~GINL~~AdtVIi~DsdWNP~~d~QAigRahRiGQ~k~V~VYrLvt~~ 1200 (1404)
++|.++++|||++.+++||+||.+.++..|+|++||++|.|+... .|.|++..
T Consensus 297 VaTdv~~rGiDi~~v~~VI~~d~p~~~~~yiqR~GRtGR~g~~G~--ai~l~~~~ 349 (460)
T PRK11776 297 VATDVAARGLDIKALEAVINYELARDPEVHVHRIGRTGRAGSKGL--ALSLVAPE 349 (460)
T ss_pred EEecccccccchhcCCeEEEecCCCCHhHhhhhcccccCCCCcce--EEEEEchh
Confidence 999999999999999999999999999999999999999998644 45566654
No 31
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=99.91 E-value=1.2e-22 Score=248.19 Aligned_cols=326 Identities=19% Similarity=0.265 Sum_probs=215.8
Q ss_pred CCCHHHHHHHHHHHHhhccCCcEEEEcCCCchHHHHHHHHHHHHHhhcc------CCCcEEEEeCCCCh-HHHHHHHHHH
Q 042857 755 ALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFK------AKLPCLVLVPLSTM-PNWLAEFALW 827 (1404)
Q Consensus 755 ~L~pyQlegVnwL~~~~~~~~~~ILADEMGLGKTiqaIa~L~~L~~~~~------~~gP~LIVvP~Sll-~nW~rEf~kw 827 (1404)
.++|+|.+++..++. +.++|+...+|.|||+.++..+...+.... ....+|||||...| .||.+++..|
T Consensus 23 ~pt~iQ~~ai~~il~----g~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~~~~~ 98 (456)
T PRK10590 23 EPTPIQQQAIPAVLE----GRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALILTPTRELAAQIGENVRDY 98 (456)
T ss_pred CCCHHHHHHHHHHhC----CCCEEEECCCCCcHHHHHHHHHHHHhhhcccccccCCCceEEEEeCcHHHHHHHHHHHHHH
Confidence 688999999987765 789999999999999998776665543321 11248999998755 8999999988
Q ss_pred CC--CCcEEEEecchhHHHHHHHhhhccCCCCccccccCCCCceEEEeeHHHHHhhh--ccccCCCceEEEEccccccCC
Q 042857 828 AP--NLNVVEYHGCAKARAIIRQYEWHASDPDNLNKKTSSYKFNVLLTTYEMILADS--SHLRGVPWEVLVVDEGHRLKN 903 (1404)
Q Consensus 828 ~P--~l~Vvvy~G~~~~R~~ir~~E~~~~~~~~~~~~~~~~kfdVvITTYe~l~~d~--~~L~~i~w~lVIVDEAHrlKN 903 (1404)
+. .+.++.+.|+......+... ...++|+|+|++.+.... ..+.--..++|||||||++-.
T Consensus 99 ~~~~~~~~~~~~gg~~~~~~~~~l---------------~~~~~IiV~TP~rL~~~~~~~~~~l~~v~~lViDEah~ll~ 163 (456)
T PRK10590 99 SKYLNIRSLVVFGGVSINPQMMKL---------------RGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLD 163 (456)
T ss_pred hccCCCEEEEEECCcCHHHHHHHH---------------cCCCcEEEEChHHHHHHHHcCCcccccceEEEeecHHHHhc
Confidence 64 45666677765443322221 135689999999886532 223334578999999999865
Q ss_pred Cc--cHHHHHHhhcccc-cEEEEeccCCCCChHHHHHHhhhhCCCCCCChhHHHHHhccccchHHHHHHHHhhhhhhhhh
Q 042857 904 SG--SKLFSLLNSFSFQ-HRVLLTGTPLQNNIGEMYNLLNFLQPASFPSLSSFEEKFNDLTTTQKVEELKKLVAPHMLRR 980 (1404)
Q Consensus 904 ~~--Sk~~~~L~~l~~~-~rLLLTGTPlqNnl~EL~sLL~fL~P~~f~s~~~F~~~f~d~~~~~~i~~L~~lL~p~mLRR 980 (1404)
.+ ..+...+..+... ..+++|||+-. .+.++ ...+... |..+.-
T Consensus 164 ~~~~~~i~~il~~l~~~~q~l~~SAT~~~-~~~~l---~~~~~~~-----------------------------~~~i~~ 210 (456)
T PRK10590 164 MGFIHDIRRVLAKLPAKRQNLLFSATFSD-DIKAL---AEKLLHN-----------------------------PLEIEV 210 (456)
T ss_pred cccHHHHHHHHHhCCccCeEEEEeCCCcH-HHHHH---HHHHcCC-----------------------------CeEEEE
Confidence 43 2334455555443 36889999621 11111 1100000 000000
Q ss_pred hHhhhhhcCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCcHH
Q 042857 981 LKKDAMQNIPPKTERMVPVELSSIQAEYYRAMLTKNYQILRNIGKGVAQQSMLNIVMQLRKVCNHPYLIPGTEPDSGSVE 1060 (1404)
Q Consensus 981 ~K~dV~~~LPpk~e~iV~V~LS~~Qk~~Y~~il~~n~~~L~~~~kg~~~~sllnilm~LRK~cnHP~L~~~~e~~~~~~e 1060 (1404)
.... ...+.....+..++
T Consensus 211 ~~~~--~~~~~i~~~~~~~~------------------------------------------------------------ 228 (456)
T PRK10590 211 ARRN--TASEQVTQHVHFVD------------------------------------------------------------ 228 (456)
T ss_pred eccc--ccccceeEEEEEcC------------------------------------------------------------
Confidence 0000 00000000000000
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHcCCeEEEEecchhHHHHHHHHHhhhcCCceEEEEeCCCCHHHHHHHHHHHhcCCC
Q 042857 1061 FLHEMRIKASAKLTLLHSMLKVLYKEGHRVLIFSQMTKLLDILEDYLNIEFGPKTYERVDGSVSVGDRQAAITRFNQDKS 1140 (1404)
Q Consensus 1061 ~l~~~~i~~SgKl~~L~kLL~kl~~~G~KVLIFSq~~~~LDiLed~L~~~f~g~~y~rLdGs~s~~eRq~~Id~Fn~~~s 1140 (1404)
...|..+|..++.. ....++|||+......+.|...|... ++....+||.++..+|..+++.|.++..
T Consensus 229 --------~~~k~~~l~~l~~~--~~~~~~lVF~~t~~~~~~l~~~L~~~--g~~~~~lhg~~~~~~R~~~l~~F~~g~~ 296 (456)
T PRK10590 229 --------KKRKRELLSQMIGK--GNWQQVLVFTRTKHGANHLAEQLNKD--GIRSAAIHGNKSQGARTRALADFKSGDI 296 (456)
T ss_pred --------HHHHHHHHHHHHHc--CCCCcEEEEcCcHHHHHHHHHHHHHC--CCCEEEEECCCCHHHHHHHHHHHHcCCC
Confidence 01122233333322 23468999999999999999999876 7888999999999999999999987655
Q ss_pred ceEEEeecccccccccccCCCEEEEEcCCCCHhHHHHHHHhhhccCCCCcEEEEEEeeCCCHHHHHHHHHHH
Q 042857 1141 RFVFLLSTRSCGLGINLATADTVIIYDSDFNPHADIQAMNRAHRIGQSKRLLVYRLVVRASVEERILQLAKK 1212 (1404)
Q Consensus 1141 ~~VfLLSTrAgG~GINL~~AdtVIi~DsdWNP~~d~QAigRahRiGQ~k~V~VYrLvt~~TvEE~Ilq~a~~ 1212 (1404)
. +|++|.++++|||++.+++||+||++.++..|+|++||++|.|....+.+ |++.. |..++...++
T Consensus 297 ~--iLVaTdv~~rGiDip~v~~VI~~~~P~~~~~yvqR~GRaGR~g~~G~ai~--l~~~~--d~~~~~~ie~ 362 (456)
T PRK10590 297 R--VLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALS--LVCVD--EHKLLRDIEK 362 (456)
T ss_pred c--EEEEccHHhcCCCcccCCEEEEeCCCCCHHHhhhhccccccCCCCeeEEE--EecHH--HHHHHHHHHH
Confidence 5 89999999999999999999999999999999999999999998765443 44432 4445444433
No 32
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.91 E-value=1.9e-22 Score=247.73 Aligned_cols=316 Identities=20% Similarity=0.280 Sum_probs=212.4
Q ss_pred CCCHHHHHHHHHHHHhhccCCcEEEEcCCCchHHHHHHHHHHHHHhhcc-------CCCcEEEEeCCCCh-HHHHHHHHH
Q 042857 755 ALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFK-------AKLPCLVLVPLSTM-PNWLAEFAL 826 (1404)
Q Consensus 755 ~L~pyQlegVnwL~~~~~~~~~~ILADEMGLGKTiqaIa~L~~L~~~~~-------~~gP~LIVvP~Sll-~nW~rEf~k 826 (1404)
.++|||.+++..++. |.++|++..+|.|||+..+..+...+.... ....+|||+|+..| .||.+++..
T Consensus 109 ~~~~iQ~~ai~~~~~----G~dvi~~apTGSGKTlay~lpil~~l~~~~~~~~~~~~~~~aLil~PtreLa~Q~~~~~~~ 184 (475)
T PRK01297 109 YCTPIQAQVLGYTLA----GHDAIGRAQTGTGKTAAFLISIINQLLQTPPPKERYMGEPRALIIAPTRELVVQIAKDAAA 184 (475)
T ss_pred CCCHHHHHHHHHHhC----CCCEEEECCCCChHHHHHHHHHHHHHHhcCcccccccCCceEEEEeCcHHHHHHHHHHHHH
Confidence 589999999987655 899999999999999887665554332221 12468999998755 788888887
Q ss_pred HCC--CCcEEEEecchhHHHHHHHhhhccCCCCccccccCCCCceEEEeeHHHHHhhhc--cccCCCceEEEEccccccC
Q 042857 827 WAP--NLNVVEYHGCAKARAIIRQYEWHASDPDNLNKKTSSYKFNVLLTTYEMILADSS--HLRGVPWEVLVVDEGHRLK 902 (1404)
Q Consensus 827 w~P--~l~Vvvy~G~~~~R~~ir~~E~~~~~~~~~~~~~~~~kfdVvITTYe~l~~d~~--~L~~i~w~lVIVDEAHrlK 902 (1404)
+.. ++++..++|+......++..+ ...++|+|+|++.+..... .+.--...+|||||+|++.
T Consensus 185 l~~~~~~~v~~~~gg~~~~~~~~~~~--------------~~~~~Iiv~TP~~Ll~~~~~~~~~l~~l~~lViDEah~l~ 250 (475)
T PRK01297 185 LTKYTGLNVMTFVGGMDFDKQLKQLE--------------ARFCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRML 250 (475)
T ss_pred hhccCCCEEEEEEccCChHHHHHHHh--------------CCCCCEEEECHHHHHHHHHcCCcccccCceEEechHHHHH
Confidence 754 567888888765444433321 1356899999999875322 1122245799999999997
Q ss_pred CCcc--HHHHHHhhcc---cccEEEEeccCCCCChHHHHHHhhhhCCCCCCChhHHHHHhccccchHHHHHHHHhhhhhh
Q 042857 903 NSGS--KLFSLLNSFS---FQHRVLLTGTPLQNNIGEMYNLLNFLQPASFPSLSSFEEKFNDLTTTQKVEELKKLVAPHM 977 (1404)
Q Consensus 903 N~~S--k~~~~L~~l~---~~~rLLLTGTPlqNnl~EL~sLL~fL~P~~f~s~~~F~~~f~d~~~~~~i~~L~~lL~p~m 977 (1404)
+.+. .+...+..+. ....+++|||... ++.++ ...+.. .|.
T Consensus 251 ~~~~~~~l~~i~~~~~~~~~~q~i~~SAT~~~-~~~~~---~~~~~~-----------------------------~~~- 296 (475)
T PRK01297 251 DMGFIPQVRQIIRQTPRKEERQTLLFSATFTD-DVMNL---AKQWTT-----------------------------DPA- 296 (475)
T ss_pred hcccHHHHHHHHHhCCCCCCceEEEEEeecCH-HHHHH---HHHhcc-----------------------------CCE-
Confidence 6432 2444455443 2356889999521 11111 110000 000
Q ss_pred hhhhHhhhhhcCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHhCCCCCCCCCCCCCC
Q 042857 978 LRRLKKDAMQNIPPKTERMVPVELSSIQAEYYRAMLTKNYQILRNIGKGVAQQSMLNIVMQLRKVCNHPYLIPGTEPDSG 1057 (1404)
Q Consensus 978 LRR~K~dV~~~LPpk~e~iV~V~LS~~Qk~~Y~~il~~n~~~L~~~~kg~~~~sllnilm~LRK~cnHP~L~~~~e~~~~ 1057 (1404)
.+.+..... ..... . .|-+.
T Consensus 297 ------------------~v~~~~~~~------------------~~~~~------------~---~~~~~--------- 316 (475)
T PRK01297 297 ------------------IVEIEPENV------------------ASDTV------------E---QHVYA--------- 316 (475)
T ss_pred ------------------EEEeccCcC------------------CCCcc------------c---EEEEE---------
Confidence 000000000 00000 0 00000
Q ss_pred cHHHHHHHHHhhhhHHHHHHHHHHHHHHcCCeEEEEecchhHHHHHHHHHhhhcCCceEEEEeCCCCHHHHHHHHHHHhc
Q 042857 1058 SVEFLHEMRIKASAKLTLLHSMLKVLYKEGHRVLIFSQMTKLLDILEDYLNIEFGPKTYERVDGSVSVGDRQAAITRFNQ 1137 (1404)
Q Consensus 1058 ~~e~l~~~~i~~SgKl~~L~kLL~kl~~~G~KVLIFSq~~~~LDiLed~L~~~f~g~~y~rLdGs~s~~eRq~~Id~Fn~ 1137 (1404)
+..+.|..+|..++.. ..+.++|||++....++.|..+|... ++.+..++|.++..+|+++++.|++
T Consensus 317 ---------~~~~~k~~~l~~ll~~--~~~~~~IVF~~s~~~~~~l~~~L~~~--~~~~~~~~g~~~~~~R~~~~~~Fr~ 383 (475)
T PRK01297 317 ---------VAGSDKYKLLYNLVTQ--NPWERVMVFANRKDEVRRIEERLVKD--GINAAQLSGDVPQHKRIKTLEGFRE 383 (475)
T ss_pred ---------ecchhHHHHHHHHHHh--cCCCeEEEEeCCHHHHHHHHHHHHHc--CCCEEEEECCCCHHHHHHHHHHHhC
Confidence 0112334444444432 23469999999999999999999865 7889999999999999999999987
Q ss_pred CCCceEEEeecccccccccccCCCEEEEEcCCCCHhHHHHHHHhhhccCCCCcEEEEEEeeC
Q 042857 1138 DKSRFVFLLSTRSCGLGINLATADTVIIYDSDFNPHADIQAMNRAHRIGQSKRLLVYRLVVR 1199 (1404)
Q Consensus 1138 ~~s~~VfLLSTrAgG~GINL~~AdtVIi~DsdWNP~~d~QAigRahRiGQ~k~V~VYrLvt~ 1199 (1404)
+... +|++|.++++|||+..+++||+||.++++..++|+.||++|.|+...+ +-|++.
T Consensus 384 G~~~--vLvaT~~l~~GIDi~~v~~VI~~~~P~s~~~y~Qr~GRaGR~g~~g~~--i~~~~~ 441 (475)
T PRK01297 384 GKIR--VLVATDVAGRGIHIDGISHVINFTLPEDPDDYVHRIGRTGRAGASGVS--ISFAGE 441 (475)
T ss_pred CCCc--EEEEccccccCCcccCCCEEEEeCCCCCHHHHHHhhCccCCCCCCceE--EEEecH
Confidence 6655 889999999999999999999999999999999999999999986543 444444
No 33
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=99.91 E-value=1.6e-22 Score=261.60 Aligned_cols=357 Identities=18% Similarity=0.240 Sum_probs=236.8
Q ss_pred CCCCHHHHHHHHHHHHhhccC--CcEEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEeCCCCh-HHHHHHHHHHCCC
Q 042857 754 GALFPHQLEALNWLRKCWHKS--KNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLSTM-PNWLAEFALWAPN 830 (1404)
Q Consensus 754 ~~L~pyQlegVnwL~~~~~~~--~~~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP~Sll-~nW~rEf~kw~P~ 830 (1404)
.+|.|+|..++..+...+..+ .+.++..++|.|||.+++..+...... ...+||+||+..| .|+...|.++++.
T Consensus 450 f~~T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT~val~a~l~al~~---g~qvlvLvPT~~LA~Q~~~~f~~~~~~ 526 (926)
T TIGR00580 450 FEETPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEVAMRAAFKAVLD---GKQVAVLVPTTLLAQQHFETFKERFAN 526 (926)
T ss_pred CCCCHHHHHHHHHHHhhhcccCcCCEEEECCCCccHHHHHHHHHHHHHHh---CCeEEEEeCcHHHHHHHHHHHHHHhcc
Confidence 368999999999998866554 578999999999999887665544432 2469999999866 7899999988765
Q ss_pred --CcEEEEecchhHHHHHHHhhhccCCCCccccccCCCCceEEEeeHHHHHhhhccccCCCceEEEEccccccCCCccHH
Q 042857 831 --LNVVEYHGCAKARAIIRQYEWHASDPDNLNKKTSSYKFNVLLTTYEMILADSSHLRGVPWEVLVVDEGHRLKNSGSKL 908 (1404)
Q Consensus 831 --l~Vvvy~G~~~~R~~ir~~E~~~~~~~~~~~~~~~~kfdVvITTYe~l~~d~~~L~~i~w~lVIVDEAHrlKN~~Sk~ 908 (1404)
+++..++|...........+ .....+.+|||+|+..+..+.. + -+..+|||||+|++. ...
T Consensus 527 ~~i~v~~Lsg~~~~~e~~~~~~-----------~l~~g~~dIVIGTp~ll~~~v~-f--~~L~llVIDEahrfg---v~~ 589 (926)
T TIGR00580 527 FPVTIELLSRFRSAKEQNEILK-----------ELASGKIDILIGTHKLLQKDVK-F--KDLGLLIIDEEQRFG---VKQ 589 (926)
T ss_pred CCcEEEEEeccccHHHHHHHHH-----------HHHcCCceEEEchHHHhhCCCC-c--ccCCEEEeecccccc---hhH
Confidence 45666776543322211111 0112367899999987754322 2 356799999999973 344
Q ss_pred HHHHhhcc-cccEEEEeccCCCCChHHHHHHhhhhCCCCCCChhHHHHHhccccchHHHHHHHHhhhhhhhhhhHhhhhh
Q 042857 909 FSLLNSFS-FQHRVLLTGTPLQNNIGEMYNLLNFLQPASFPSLSSFEEKFNDLTTTQKVEELKKLVAPHMLRRLKKDAMQ 987 (1404)
Q Consensus 909 ~~~L~~l~-~~~rLLLTGTPlqNnl~EL~sLL~fL~P~~f~s~~~F~~~f~d~~~~~~i~~L~~lL~p~mLRR~K~dV~~ 987 (1404)
...++.+. ....|+|||||+...+.. .+..+.++. + +
T Consensus 590 ~~~L~~~~~~~~vL~~SATpiprtl~~--~l~g~~d~s-------------------------------~--------I- 627 (926)
T TIGR00580 590 KEKLKELRTSVDVLTLSATPIPRTLHM--SMSGIRDLS-------------------------------I--------I- 627 (926)
T ss_pred HHHHHhcCCCCCEEEEecCCCHHHHHH--HHhcCCCcE-------------------------------E--------E-
Confidence 55566654 457899999997643321 010000000 0 0
Q ss_pred cCCCceEEEE---EecCCHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCcHHHHHH
Q 042857 988 NIPPKTERMV---PVELSSIQAEYYRAMLTKNYQILRNIGKGVAQQSMLNIVMQLRKVCNHPYLIPGTEPDSGSVEFLHE 1064 (1404)
Q Consensus 988 ~LPpk~e~iV---~V~LS~~Qk~~Y~~il~~n~~~L~~~~kg~~~~sllnilm~LRK~cnHP~L~~~~e~~~~~~e~l~~ 1064 (1404)
..||.....+ .++...
T Consensus 628 ~~~p~~R~~V~t~v~~~~~------------------------------------------------------------- 646 (926)
T TIGR00580 628 ATPPEDRLPVRTFVMEYDP------------------------------------------------------------- 646 (926)
T ss_pred ecCCCCccceEEEEEecCH-------------------------------------------------------------
Confidence 0111110000 011000
Q ss_pred HHHhhhhHHHHHHHHHHHHHHcCCeEEEEecchhHHHHHHHHHhhhcCCceEEEEeCCCCHHHHHHHHHHHhcCCCceEE
Q 042857 1065 MRIKASAKLTLLHSMLKVLYKEGHRVLIFSQMTKLLDILEDYLNIEFGPKTYERVDGSVSVGDRQAAITRFNQDKSRFVF 1144 (1404)
Q Consensus 1065 ~~i~~SgKl~~L~kLL~kl~~~G~KVLIFSq~~~~LDiLed~L~~~f~g~~y~rLdGs~s~~eRq~~Id~Fn~~~s~~Vf 1144 (1404)
..+...+......|.+++||++....++.+...|...++++.+..+||.|+..+|.+++.+|.++... +
T Consensus 647 ---------~~i~~~i~~el~~g~qv~if~n~i~~~e~l~~~L~~~~p~~~v~~lHG~m~~~eRe~im~~F~~Gk~~--I 715 (926)
T TIGR00580 647 ---------ELVREAIRRELLRGGQVFYVHNRIESIEKLATQLRELVPEARIAIAHGQMTENELEEVMLEFYKGEFQ--V 715 (926)
T ss_pred ---------HHHHHHHHHHHHcCCeEEEEECCcHHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHHHHHcCCCC--E
Confidence 00000111112357899999999999999999999877788999999999999999999999877665 8
Q ss_pred EeecccccccccccCCCEEEEEcCC-CCHhHHHHHHHhhhccCCCCcEEEEEEeeCCCHHHHHHHHHHHHHhhhHHHhc-
Q 042857 1145 LLSTRSCGLGINLATADTVIIYDSD-FNPHADIQAMNRAHRIGQSKRLLVYRLVVRASVEERILQLAKKKLMLDQLFVN- 1222 (1404)
Q Consensus 1145 LLSTrAgG~GINL~~AdtVIi~Dsd-WNP~~d~QAigRahRiGQ~k~V~VYrLvt~~TvEE~Ilq~a~~Kl~L~~~vv~- 1222 (1404)
|++|.+.++|||++.+++||+++.+ +....+.|+.||++|.|.. -.+|-|+..+.. +.+.+.+++.......+
T Consensus 716 LVaT~iie~GIDIp~v~~VIi~~a~~~gls~l~Qr~GRvGR~g~~--g~aill~~~~~~---l~~~~~~RL~~~~~~~~~ 790 (926)
T TIGR00580 716 LVCTTIIETGIDIPNANTIIIERADKFGLAQLYQLRGRVGRSKKK--AYAYLLYPHQKA---LTEDAQKRLEAIQEFSEL 790 (926)
T ss_pred EEECChhhcccccccCCEEEEecCCCCCHHHHHHHhcCCCCCCCC--eEEEEEECCccc---CCHHHHHHHHHHHHhhcc
Confidence 9999999999999999999999996 5677899999999999864 345666654321 12233333322222211
Q ss_pred CCCChHHHHHHHHhhHHHHhcCCCCCC
Q 042857 1223 KSGSQKEVEDILRWGTEELFNDSPGIN 1249 (1404)
Q Consensus 1223 ~~~s~~eledilk~Ga~~Lf~~~~~~~ 1249 (1404)
+++..-...||--.|+.+||...+...
T Consensus 791 g~gf~ia~~Dl~~Rg~G~~lG~~QsG~ 817 (926)
T TIGR00580 791 GAGFKIALHDLEIRGAGNLLGEEQSGH 817 (926)
T ss_pred hhhHHHHHHHHHhcCCcCCCCCcccCc
Confidence 234445567777789999997765543
No 34
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.91 E-value=9.6e-23 Score=246.86 Aligned_cols=315 Identities=18% Similarity=0.229 Sum_probs=213.9
Q ss_pred CCCHHHHHHHHHHHHhhccCCcEEEEcCCCchHHHHHHHHHHHHHhhcc-------CCCcEEEEeCCCCh-HHHHHHHHH
Q 042857 755 ALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFK-------AKLPCLVLVPLSTM-PNWLAEFAL 826 (1404)
Q Consensus 755 ~L~pyQlegVnwL~~~~~~~~~~ILADEMGLGKTiqaIa~L~~L~~~~~-------~~gP~LIVvP~Sll-~nW~rEf~k 826 (1404)
.+.|.|.+++.-++. +.++|+..++|.|||+.++..+...+.... ....+||++|...| .||.+++..
T Consensus 30 ~pt~iQ~~aip~il~----g~dvi~~ApTGsGKTla~llp~l~~l~~~~~~~~~~~~~~~~lil~PtreLa~Qi~~~~~~ 105 (423)
T PRK04837 30 NCTPIQALALPLTLA----GRDVAGQAQTGTGKTMAFLTATFHYLLSHPAPEDRKVNQPRALIMAPTRELAVQIHADAEP 105 (423)
T ss_pred CCCHHHHHHHHHHhC----CCcEEEECCCCchHHHHHHHHHHHHHHhcccccccccCCceEEEECCcHHHHHHHHHHHHH
Confidence 578999999987765 899999999999999988766554332211 12358999998755 889888887
Q ss_pred HCC--CCcEEEEecchhHHHHHHHhhhccCCCCccccccCCCCceEEEeeHHHHHhhh--ccccCCCceEEEEccccccC
Q 042857 827 WAP--NLNVVEYHGCAKARAIIRQYEWHASDPDNLNKKTSSYKFNVLLTTYEMILADS--SHLRGVPWEVLVVDEGHRLK 902 (1404)
Q Consensus 827 w~P--~l~Vvvy~G~~~~R~~ir~~E~~~~~~~~~~~~~~~~kfdVvITTYe~l~~d~--~~L~~i~w~lVIVDEAHrlK 902 (1404)
+.. ++++..++|+.......... ...++|+|+|++.+.... ..+.--.+.+|||||||++-
T Consensus 106 l~~~~~~~v~~~~gg~~~~~~~~~l---------------~~~~~IlV~TP~~l~~~l~~~~~~l~~v~~lViDEad~l~ 170 (423)
T PRK04837 106 LAQATGLKLGLAYGGDGYDKQLKVL---------------ESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMF 170 (423)
T ss_pred HhccCCceEEEEECCCCHHHHHHHh---------------cCCCCEEEECHHHHHHHHHcCCcccccccEEEEecHHHHh
Confidence 753 57788888865544332221 124689999999887543 23333467899999999986
Q ss_pred CCc--cHHHHHHhhccc---ccEEEEeccCCCCChHHHHHHhhhhCCCCCCChhHHHHHhccccchHHHHHHHHhhhhhh
Q 042857 903 NSG--SKLFSLLNSFSF---QHRVLLTGTPLQNNIGEMYNLLNFLQPASFPSLSSFEEKFNDLTTTQKVEELKKLVAPHM 977 (1404)
Q Consensus 903 N~~--Sk~~~~L~~l~~---~~rLLLTGTPlqNnl~EL~sLL~fL~P~~f~s~~~F~~~f~d~~~~~~i~~L~~lL~p~m 977 (1404)
..+ ..+...+..+.. ...+++|||.-. .+.++.. .++.
T Consensus 171 ~~~f~~~i~~i~~~~~~~~~~~~~l~SAT~~~-~~~~~~~--~~~~---------------------------------- 213 (423)
T PRK04837 171 DLGFIKDIRWLFRRMPPANQRLNMLFSATLSY-RVRELAF--EHMN---------------------------------- 213 (423)
T ss_pred hcccHHHHHHHHHhCCCccceeEEEEeccCCH-HHHHHHH--HHCC----------------------------------
Confidence 543 233334444432 234788999621 1111100 0000
Q ss_pred hhhhHhhhhhcCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHhCCCCCCCCCCCCCC
Q 042857 978 LRRLKKDAMQNIPPKTERMVPVELSSIQAEYYRAMLTKNYQILRNIGKGVAQQSMLNIVMQLRKVCNHPYLIPGTEPDSG 1057 (1404)
Q Consensus 978 LRR~K~dV~~~LPpk~e~iV~V~LS~~Qk~~Y~~il~~n~~~L~~~~kg~~~~sllnilm~LRK~cnHP~L~~~~e~~~~ 1057 (1404)
-| .. +.+.-... .... + .+.++..
T Consensus 214 -----------~p--~~--i~v~~~~~------------------~~~~------------i----~~~~~~~------- 237 (423)
T PRK04837 214 -----------NP--EY--VEVEPEQK------------------TGHR------------I----KEELFYP------- 237 (423)
T ss_pred -----------CC--EE--EEEcCCCc------------------CCCc------------e----eEEEEeC-------
Confidence 00 00 00000000 0000 0 0000000
Q ss_pred cHHHHHHHHHhhhhHHHHHHHHHHHHHHcCCeEEEEecchhHHHHHHHHHhhhcCCceEEEEeCCCCHHHHHHHHHHHhc
Q 042857 1058 SVEFLHEMRIKASAKLTLLHSMLKVLYKEGHRVLIFSQMTKLLDILEDYLNIEFGPKTYERVDGSVSVGDRQAAITRFNQ 1137 (1404)
Q Consensus 1058 ~~e~l~~~~i~~SgKl~~L~kLL~kl~~~G~KVLIFSq~~~~LDiLed~L~~~f~g~~y~rLdGs~s~~eRq~~Id~Fn~ 1137 (1404)
....|+.+|..++.. ....++|||++....++.|..+|... ++.+..++|.++..+|..+++.|++
T Consensus 238 ----------~~~~k~~~l~~ll~~--~~~~~~lVF~~t~~~~~~l~~~L~~~--g~~v~~lhg~~~~~~R~~~l~~F~~ 303 (423)
T PRK04837 238 ----------SNEEKMRLLQTLIEE--EWPDRAIIFANTKHRCEEIWGHLAAD--GHRVGLLTGDVAQKKRLRILEEFTR 303 (423)
T ss_pred ----------CHHHHHHHHHHHHHh--cCCCeEEEEECCHHHHHHHHHHHHhC--CCcEEEecCCCChhHHHHHHHHHHc
Confidence 012355556665543 24679999999999999999999876 7899999999999999999999987
Q ss_pred CCCceEEEeecccccccccccCCCEEEEEcCCCCHhHHHHHHHhhhccCCCCcEEEEEEeeC
Q 042857 1138 DKSRFVFLLSTRSCGLGINLATADTVIIYDSDFNPHADIQAMNRAHRIGQSKRLLVYRLVVR 1199 (1404)
Q Consensus 1138 ~~s~~VfLLSTrAgG~GINL~~AdtVIi~DsdWNP~~d~QAigRahRiGQ~k~V~VYrLvt~ 1199 (1404)
+... +|++|.++++|||++.+++||+||+++++..|+|++||++|.|+...+ +-|++.
T Consensus 304 g~~~--vLVaTdv~~rGiDip~v~~VI~~d~P~s~~~yiqR~GR~gR~G~~G~a--i~~~~~ 361 (423)
T PRK04837 304 GDLD--ILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHS--ISLACE 361 (423)
T ss_pred CCCc--EEEEechhhcCCCccccCEEEEeCCCCchhheEeccccccCCCCCeeE--EEEeCH
Confidence 7665 899999999999999999999999999999999999999999986554 445554
No 35
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.91 E-value=1.6e-22 Score=248.13 Aligned_cols=307 Identities=20% Similarity=0.201 Sum_probs=211.2
Q ss_pred CCCHHHHHHHHHHHHhhccCCcEEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEeCCCC-hHHHHHHHHHHCCCCcE
Q 042857 755 ALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLST-MPNWLAEFALWAPNLNV 833 (1404)
Q Consensus 755 ~L~pyQlegVnwL~~~~~~~~~~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP~Sl-l~nW~rEf~kw~P~l~V 833 (1404)
.++|+|.+++.-++. +.++++..++|.|||+.++..+.. ..+..|||+|+.. +.+|.+.+..+ ++.+
T Consensus 11 ~~r~~Q~~ai~~~l~----g~dvlv~apTGsGKTl~y~lp~l~------~~~~~lVi~P~~~L~~dq~~~l~~~--gi~~ 78 (470)
T TIGR00614 11 SFRPVQLEVINAVLL----GRDCFVVMPTGGGKSLCYQLPALC------SDGITLVISPLISLMEDQVLQLKAS--GIPA 78 (470)
T ss_pred CCCHHHHHHHHHHHc----CCCEEEEcCCCCcHhHHHHHHHHH------cCCcEEEEecHHHHHHHHHHHHHHc--CCcE
Confidence 699999999998765 789999999999999876544322 2357899999864 47788888765 4566
Q ss_pred EEEecchhHHHHHHHhhhccCCCCccccccCCCCceEEEeeHHHHHhhh---ccc-cCCCceEEEEccccccCCCccH--
Q 042857 834 VEYHGCAKARAIIRQYEWHASDPDNLNKKTSSYKFNVLLTTYEMILADS---SHL-RGVPWEVLVVDEGHRLKNSGSK-- 907 (1404)
Q Consensus 834 vvy~G~~~~R~~ir~~E~~~~~~~~~~~~~~~~kfdVvITTYe~l~~d~---~~L-~~i~w~lVIVDEAHrlKN~~Sk-- 907 (1404)
..+.|..........+. ......++|+++|++.+.... ..+ ...++.+|||||||++-..+..
T Consensus 79 ~~l~~~~~~~~~~~i~~-----------~~~~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~~iViDEaH~i~~~g~~fr 147 (470)
T TIGR00614 79 TFLNSSQSKEQQKNVLT-----------DLKDGKIKLLYVTPEKCSASNRLLQTLEERKGITLIAVDEAHCISQWGHDFR 147 (470)
T ss_pred EEEeCCCCHHHHHHHHH-----------HHhcCCCCEEEECHHHHcCchhHHHHHHhcCCcCEEEEeCCcccCccccccH
Confidence 66666544332211111 012246789999999986533 223 3457889999999998654421
Q ss_pred -----HHHHHhhcccccEEEEeccCCCCChHHHHHHhhhhCCCCCCChhHHHHHhccccchHHHHHHHHhhhhhhhhhhH
Q 042857 908 -----LFSLLNSFSFQHRVLLTGTPLQNNIGEMYNLLNFLQPASFPSLSSFEEKFNDLTTTQKVEELKKLVAPHMLRRLK 982 (1404)
Q Consensus 908 -----~~~~L~~l~~~~rLLLTGTPlqNnl~EL~sLL~fL~P~~f~s~~~F~~~f~d~~~~~~i~~L~~lL~p~mLRR~K 982 (1404)
+......+.....++|||||-.....++...+.+-.|..+.. .|
T Consensus 148 ~~~~~l~~l~~~~~~~~~l~lTAT~~~~~~~di~~~l~l~~~~~~~~------s~------------------------- 196 (470)
T TIGR00614 148 PDYKALGSLKQKFPNVPIMALTATASPSVREDILRQLNLKNPQIFCT------SF------------------------- 196 (470)
T ss_pred HHHHHHHHHHHHcCCCceEEEecCCCHHHHHHHHHHcCCCCCcEEeC------CC-------------------------
Confidence 222333445566899999996655555555544433322100 00
Q ss_pred hhhhhcCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCcHHHH
Q 042857 983 KDAMQNIPPKTERMVPVELSSIQAEYYRAMLTKNYQILRNIGKGVAQQSMLNIVMQLRKVCNHPYLIPGTEPDSGSVEFL 1062 (1404)
Q Consensus 983 ~dV~~~LPpk~e~iV~V~LS~~Qk~~Y~~il~~n~~~L~~~~kg~~~~sllnilm~LRK~cnHP~L~~~~e~~~~~~e~l 1062 (1404)
.-|.. .+.+.-...
T Consensus 197 -----~r~nl-~~~v~~~~~------------------------------------------------------------ 210 (470)
T TIGR00614 197 -----DRPNL-YYEVRRKTP------------------------------------------------------------ 210 (470)
T ss_pred -----CCCCc-EEEEEeCCc------------------------------------------------------------
Confidence 00100 000000000
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHcCCeEEEEecchhHHHHHHHHHhhhcCCceEEEEeCCCCHHHHHHHHHHHhcCCCce
Q 042857 1063 HEMRIKASAKLTLLHSMLKVLYKEGHRVLIFSQMTKLLDILEDYLNIEFGPKTYERVDGSVSVGDRQAAITRFNQDKSRF 1142 (1404)
Q Consensus 1063 ~~~~i~~SgKl~~L~kLL~kl~~~G~KVLIFSq~~~~LDiLed~L~~~f~g~~y~rLdGs~s~~eRq~~Id~Fn~~~s~~ 1142 (1404)
..+..|...|.. ...|.++|||+......+.|..+|... ++.+..+||+++..+|..+++.|..+...
T Consensus 211 --------~~~~~l~~~l~~-~~~~~~~IIF~~s~~~~e~la~~L~~~--g~~~~~~H~~l~~~eR~~i~~~F~~g~~~- 278 (470)
T TIGR00614 211 --------KILEDLLRFIRK-EFKGKSGIIYCPSRKKSEQVTASLQNL--GIAAGAYHAGLEISARDDVHHKFQRDEIQ- 278 (470)
T ss_pred --------cHHHHHHHHHHH-hcCCCceEEEECcHHHHHHHHHHHHhc--CCCeeEeeCCCCHHHHHHHHHHHHcCCCc-
Confidence 001111111111 134677899999999999999999876 78899999999999999999999866555
Q ss_pred EEEeecccccccccccCCCEEEEEcCCCCHhHHHHHHHhhhccCCCCcEEEE
Q 042857 1143 VFLLSTRSCGLGINLATADTVIIYDSDFNPHADIQAMNRAHRIGQSKRLLVY 1194 (1404)
Q Consensus 1143 VfLLSTrAgG~GINL~~AdtVIi~DsdWNP~~d~QAigRahRiGQ~k~V~VY 1194 (1404)
+|++|.+.|+|||++.+++||+|+++.++..|.|++||++|.|+...+.+|
T Consensus 279 -vLVaT~~~~~GID~p~V~~VI~~~~P~s~~~y~Qr~GRaGR~G~~~~~~~~ 329 (470)
T TIGR00614 279 -VVVATVAFGMGINKPDVRFVIHYSLPKSMESYYQESGRAGRDGLPSECHLF 329 (470)
T ss_pred -EEEEechhhccCCcccceEEEEeCCCCCHHHHHhhhcCcCCCCCCceEEEE
Confidence 889999999999999999999999999999999999999999987766554
No 36
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=99.91 E-value=3.7e-22 Score=242.48 Aligned_cols=313 Identities=18% Similarity=0.235 Sum_probs=211.0
Q ss_pred CCCHHHHHHHHHHHHhhccCCcEEEEcCCCchHHHHHHHHHHHHHhhc----cCCCcEEEEeCCCCh-HHHHHHHHHHCC
Q 042857 755 ALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEF----KAKLPCLVLVPLSTM-PNWLAEFALWAP 829 (1404)
Q Consensus 755 ~L~pyQlegVnwL~~~~~~~~~~ILADEMGLGKTiqaIa~L~~L~~~~----~~~gP~LIVvP~Sll-~nW~rEf~kw~P 829 (1404)
.++|+|.+++..++. +.++|+...+|.|||+.++..+...+... .....+||++|...+ .|+.+.+..|+.
T Consensus 23 ~p~~iQ~~ai~~~~~----g~d~l~~apTGsGKT~~~~lp~l~~l~~~~~~~~~~~~~lil~Pt~eLa~Q~~~~~~~l~~ 98 (434)
T PRK11192 23 RPTAIQAEAIPPALD----GRDVLGSAPTGTGKTAAFLLPALQHLLDFPRRKSGPPRILILTPTRELAMQVADQARELAK 98 (434)
T ss_pred CCCHHHHHHHHHHhC----CCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCceEEEECCcHHHHHHHHHHHHHHHc
Confidence 588999999988765 78999999999999998776555443221 123468999998754 788888877753
Q ss_pred --CCcEEEEecchhHHHHHHHhhhccCCCCccccccCCCCceEEEeeHHHHHhhh--ccccCCCceEEEEccccccCCCc
Q 042857 830 --NLNVVEYHGCAKARAIIRQYEWHASDPDNLNKKTSSYKFNVLLTTYEMILADS--SHLRGVPWEVLVVDEGHRLKNSG 905 (1404)
Q Consensus 830 --~l~Vvvy~G~~~~R~~ir~~E~~~~~~~~~~~~~~~~kfdVvITTYe~l~~d~--~~L~~i~w~lVIVDEAHrlKN~~ 905 (1404)
++++..++|+.........+ ....+|+|+|++.+.... ..+..-.+++|||||||++-..+
T Consensus 99 ~~~~~v~~~~gg~~~~~~~~~l---------------~~~~~IlV~Tp~rl~~~~~~~~~~~~~v~~lViDEah~~l~~~ 163 (434)
T PRK11192 99 HTHLDIATITGGVAYMNHAEVF---------------SENQDIVVATPGRLLQYIKEENFDCRAVETLILDEADRMLDMG 163 (434)
T ss_pred cCCcEEEEEECCCCHHHHHHHh---------------cCCCCEEEEChHHHHHHHHcCCcCcccCCEEEEECHHHHhCCC
Confidence 57888888876544322211 125689999999887542 22333456799999999986543
Q ss_pred --cHHHHHHhhccc-ccEEEEeccCCCCChHHHHHHhhhhCCCCCCChhHHHHHhccccchHHHHHHHHhhhhhhhhhhH
Q 042857 906 --SKLFSLLNSFSF-QHRVLLTGTPLQNNIGEMYNLLNFLQPASFPSLSSFEEKFNDLTTTQKVEELKKLVAPHMLRRLK 982 (1404)
Q Consensus 906 --Sk~~~~L~~l~~-~~rLLLTGTPlqNnl~EL~sLL~fL~P~~f~s~~~F~~~f~d~~~~~~i~~L~~lL~p~mLRR~K 982 (1404)
..+...+..+.. ...+++|||+-...+.++.. .+...
T Consensus 164 ~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~---~~~~~------------------------------------- 203 (434)
T PRK11192 164 FAQDIETIAAETRWRKQTLLFSATLEGDAVQDFAE---RLLND------------------------------------- 203 (434)
T ss_pred cHHHHHHHHHhCccccEEEEEEeecCHHHHHHHHH---HHccC-------------------------------------
Confidence 223333333332 34588999973222221111 00000
Q ss_pred hhhhhcCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCcHHHH
Q 042857 983 KDAMQNIPPKTERMVPVELSSIQAEYYRAMLTKNYQILRNIGKGVAQQSMLNIVMQLRKVCNHPYLIPGTEPDSGSVEFL 1062 (1404)
Q Consensus 983 ~dV~~~LPpk~e~iV~V~LS~~Qk~~Y~~il~~n~~~L~~~~kg~~~~sllnilm~LRK~cnHP~L~~~~e~~~~~~e~l 1062 (1404)
| . .+.+........ . ..|-+....
T Consensus 204 -------~--~--~i~~~~~~~~~~------------------~----------------i~~~~~~~~----------- 227 (434)
T PRK11192 204 -------P--V--EVEAEPSRRERK------------------K----------------IHQWYYRAD----------- 227 (434)
T ss_pred -------C--E--EEEecCCccccc------------------C----------------ceEEEEEeC-----------
Confidence 0 0 000000000000 0 000000000
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHcCCeEEEEecchhHHHHHHHHHhhhcCCceEEEEeCCCCHHHHHHHHHHHhcCCCce
Q 042857 1063 HEMRIKASAKLTLLHSMLKVLYKEGHRVLIFSQMTKLLDILEDYLNIEFGPKTYERVDGSVSVGDRQAAITRFNQDKSRF 1142 (1404)
Q Consensus 1063 ~~~~i~~SgKl~~L~kLL~kl~~~G~KVLIFSq~~~~LDiLed~L~~~f~g~~y~rLdGs~s~~eRq~~Id~Fn~~~s~~ 1142 (1404)
....|+.+|..++.. ..+.++|||+.....++.|..+|... ++.+..++|.++..+|..+++.|+++...
T Consensus 228 -----~~~~k~~~l~~l~~~--~~~~~~lVF~~s~~~~~~l~~~L~~~--~~~~~~l~g~~~~~~R~~~l~~f~~G~~~- 297 (434)
T PRK11192 228 -----DLEHKTALLCHLLKQ--PEVTRSIVFVRTRERVHELAGWLRKA--GINCCYLEGEMVQAKRNEAIKRLTDGRVN- 297 (434)
T ss_pred -----CHHHHHHHHHHHHhc--CCCCeEEEEeCChHHHHHHHHHHHhC--CCCEEEecCCCCHHHHHHHHHHHhCCCCc-
Confidence 012344455555432 24679999999999999999999875 78899999999999999999999876555
Q ss_pred EEEeecccccccccccCCCEEEEEcCCCCHhHHHHHHHhhhccCCCCcEEE
Q 042857 1143 VFLLSTRSCGLGINLATADTVIIYDSDFNPHADIQAMNRAHRIGQSKRLLV 1193 (1404)
Q Consensus 1143 VfLLSTrAgG~GINL~~AdtVIi~DsdWNP~~d~QAigRahRiGQ~k~V~V 1193 (1404)
+|++|.++++|||++.+++||+||+++++..|+|++||++|.|....+.+
T Consensus 298 -vLVaTd~~~~GiDip~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~g~ai~ 347 (434)
T PRK11192 298 -VLVATDVAARGIDIDDVSHVINFDMPRSADTYLHRIGRTGRAGRKGTAIS 347 (434)
T ss_pred -EEEEccccccCccCCCCCEEEEECCCCCHHHHhhcccccccCCCCceEEE
Confidence 89999999999999999999999999999999999999999998666544
No 37
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=99.91 E-value=6.8e-22 Score=248.72 Aligned_cols=325 Identities=18% Similarity=0.245 Sum_probs=219.9
Q ss_pred CCCHHHHHHHHHHHHhhccCCcEEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEeCCCCh-HHHHHHHHHHC---CC
Q 042857 755 ALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLSTM-PNWLAEFALWA---PN 830 (1404)
Q Consensus 755 ~L~pyQlegVnwL~~~~~~~~~~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP~Sll-~nW~rEf~kw~---P~ 830 (1404)
++.|+|.+++..++. +.++|+...+|.|||++++..+...+........+||+||...| .||..++..|. ++
T Consensus 28 ~ptpiQ~~ai~~ll~----g~dvl~~ApTGsGKT~af~lpll~~l~~~~~~~~~LIL~PTreLa~Qv~~~l~~~~~~~~~ 103 (629)
T PRK11634 28 KPSPIQAECIPHLLN----GRDVLGMAQTGSGKTAAFSLPLLHNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRG 103 (629)
T ss_pred CCCHHHHHHHHHHHc----CCCEEEEcCCCCcHHHHHHHHHHHHhhhccCCCeEEEEeCcHHHHHHHHHHHHHHHhhcCC
Confidence 689999999988765 78999999999999998765554443333333468999999755 89999988774 67
Q ss_pred CcEEEEecchhHHHHHHHhhhccCCCCccccccCCCCceEEEeeHHHHHhhh--ccccCCCceEEEEccccccCCCc--c
Q 042857 831 LNVVEYHGCAKARAIIRQYEWHASDPDNLNKKTSSYKFNVLLTTYEMILADS--SHLRGVPWEVLVVDEGHRLKNSG--S 906 (1404)
Q Consensus 831 l~Vvvy~G~~~~R~~ir~~E~~~~~~~~~~~~~~~~kfdVvITTYe~l~~d~--~~L~~i~w~lVIVDEAHrlKN~~--S 906 (1404)
++++.++|.......++... ...+|||+|++.+.... ..+.--.+.+|||||||.+-+.+ .
T Consensus 104 i~v~~~~gG~~~~~q~~~l~---------------~~~~IVVgTPgrl~d~l~r~~l~l~~l~~lVlDEAd~ml~~gf~~ 168 (629)
T PRK11634 104 VNVVALYGGQRYDVQLRALR---------------QGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIE 168 (629)
T ss_pred ceEEEEECCcCHHHHHHHhc---------------CCCCEEEECHHHHHHHHHcCCcchhhceEEEeccHHHHhhcccHH
Confidence 88888888765544433321 24689999999887542 22333456789999999986543 3
Q ss_pred HHHHHHhhcccc-cEEEEeccCCCCChHHHHHHhhhhCCCCCCChhHHHHHhccccchHHHHHHHHhhhhhhhhhhHhhh
Q 042857 907 KLFSLLNSFSFQ-HRVLLTGTPLQNNIGEMYNLLNFLQPASFPSLSSFEEKFNDLTTTQKVEELKKLVAPHMLRRLKKDA 985 (1404)
Q Consensus 907 k~~~~L~~l~~~-~rLLLTGTPlqNnl~EL~sLL~fL~P~~f~s~~~F~~~f~d~~~~~~i~~L~~lL~p~mLRR~K~dV 985 (1404)
.+...+..+... ..+++|||.- ..+.++ . ..|.. .|..+. ... .
T Consensus 169 di~~Il~~lp~~~q~llfSAT~p-~~i~~i---~---------------~~~l~--------------~~~~i~-i~~-~ 213 (629)
T PRK11634 169 DVETIMAQIPEGHQTALFSATMP-EAIRRI---T---------------RRFMK--------------EPQEVR-IQS-S 213 (629)
T ss_pred HHHHHHHhCCCCCeEEEEEccCC-hhHHHH---H---------------HHHcC--------------CCeEEE-ccC-c
Confidence 345566666544 4588999951 111111 0 00000 000000 000 0
Q ss_pred hhcCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCcHHHHHHH
Q 042857 986 MQNIPPKTERMVPVELSSIQAEYYRAMLTKNYQILRNIGKGVAQQSMLNIVMQLRKVCNHPYLIPGTEPDSGSVEFLHEM 1065 (1404)
Q Consensus 986 ~~~LPpk~e~iV~V~LS~~Qk~~Y~~il~~n~~~L~~~~kg~~~~sllnilm~LRK~cnHP~L~~~~e~~~~~~e~l~~~ 1065 (1404)
....|......+.
T Consensus 214 ~~~~~~i~q~~~~------------------------------------------------------------------- 226 (629)
T PRK11634 214 VTTRPDISQSYWT------------------------------------------------------------------- 226 (629)
T ss_pred cccCCceEEEEEE-------------------------------------------------------------------
Confidence 0000000000000
Q ss_pred HHhhhhHHHHHHHHHHHHHHcCCeEEEEecchhHHHHHHHHHhhhcCCceEEEEeCCCCHHHHHHHHHHHhcCCCceEEE
Q 042857 1066 RIKASAKLTLLHSMLKVLYKEGHRVLIFSQMTKLLDILEDYLNIEFGPKTYERVDGSVSVGDRQAAITRFNQDKSRFVFL 1145 (1404)
Q Consensus 1066 ~i~~SgKl~~L~kLL~kl~~~G~KVLIFSq~~~~LDiLed~L~~~f~g~~y~rLdGs~s~~eRq~~Id~Fn~~~s~~VfL 1145 (1404)
+....|+..|..+|.. ....++||||......+.|..+|... ++....++|.+++.+|..++++|..+... +|
T Consensus 227 -v~~~~k~~~L~~~L~~--~~~~~~IVF~~tk~~a~~l~~~L~~~--g~~~~~lhgd~~q~~R~~il~~Fr~G~~~--IL 299 (629)
T PRK11634 227 -VWGMRKNEALVRFLEA--EDFDAAIIFVRTKNATLEVAEALERN--GYNSAALNGDMNQALREQTLERLKDGRLD--IL 299 (629)
T ss_pred -echhhHHHHHHHHHHh--cCCCCEEEEeccHHHHHHHHHHHHhC--CCCEEEeeCCCCHHHHHHHHHHHhCCCCC--EE
Confidence 0112344455555543 23468999999999999999999876 78899999999999999999999876555 89
Q ss_pred eecccccccccccCCCEEEEEcCCCCHhHHHHHHHhhhccCCCCcEEEEEEeeCCCHHHHHHHHHH
Q 042857 1146 LSTRSCGLGINLATADTVIIYDSDFNPHADIQAMNRAHRIGQSKRLLVYRLVVRASVEERILQLAK 1211 (1404)
Q Consensus 1146 LSTrAgG~GINL~~AdtVIi~DsdWNP~~d~QAigRahRiGQ~k~V~VYrLvt~~TvEE~Ilq~a~ 1211 (1404)
++|.+++.|||++.+++||+||.+.++..|+|++||++|.|....+.+ |++. -|.+++..+.
T Consensus 300 VATdv~arGIDip~V~~VI~~d~P~~~e~yvqRiGRtGRaGr~G~ai~--~v~~--~e~~~l~~ie 361 (629)
T PRK11634 300 IATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALL--FVEN--RERRLLRNIE 361 (629)
T ss_pred EEcchHhcCCCcccCCEEEEeCCCCCHHHHHHHhccccCCCCcceEEE--Eech--HHHHHHHHHH
Confidence 999999999999999999999999999999999999999998654433 3333 3445555443
No 38
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=99.91 E-value=1e-21 Score=250.25 Aligned_cols=306 Identities=16% Similarity=0.210 Sum_probs=209.0
Q ss_pred CCCCHHHHHHHHHHHHhhccC--CcEEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEeCCCCh-HHHHHHHHHHCCC
Q 042857 754 GALFPHQLEALNWLRKCWHKS--KNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLSTM-PNWLAEFALWAPN 830 (1404)
Q Consensus 754 ~~L~pyQlegVnwL~~~~~~~--~~~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP~Sll-~nW~rEf~kw~P~ 830 (1404)
.+|+++|..++..+...+..+ .+.+|..++|.|||+.++..+..... ....+||++|+..| .|+.+.|.+|++.
T Consensus 260 f~lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~~---~g~q~lilaPT~~LA~Q~~~~l~~l~~~ 336 (681)
T PRK10917 260 FELTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAIE---AGYQAALMAPTEILAEQHYENLKKLLEP 336 (681)
T ss_pred CCCCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHHHH---cCCeEEEEeccHHHHHHHHHHHHHHHhh
Confidence 479999999999998866543 57899999999999998877665543 23469999999866 7899999999865
Q ss_pred --CcEEEEecchhHHHHHHHhhhccCCCCccccccCCCCceEEEeeHHHHHhhhccccCCCceEEEEccccccCCCccHH
Q 042857 831 --LNVVEYHGCAKARAIIRQYEWHASDPDNLNKKTSSYKFNVLLTTYEMILADSSHLRGVPWEVLVVDEGHRLKNSGSKL 908 (1404)
Q Consensus 831 --l~Vvvy~G~~~~R~~ir~~E~~~~~~~~~~~~~~~~kfdVvITTYe~l~~d~~~L~~i~w~lVIVDEAHrlKN~~Sk~ 908 (1404)
+++..++|+..........+ .......+|+|+|+..+..... + -+.++|||||+|++. ...
T Consensus 337 ~~i~v~ll~G~~~~~~r~~~~~-----------~l~~g~~~IvVgT~~ll~~~v~-~--~~l~lvVIDE~Hrfg---~~q 399 (681)
T PRK10917 337 LGIRVALLTGSLKGKERREILE-----------AIASGEADIVIGTHALIQDDVE-F--HNLGLVIIDEQHRFG---VEQ 399 (681)
T ss_pred cCcEEEEEcCCCCHHHHHHHHH-----------HHhCCCCCEEEchHHHhcccch-h--cccceEEEechhhhh---HHH
Confidence 78889999865432221111 1122467999999988864321 2 356799999999983 333
Q ss_pred HHHHhhc-ccccEEEEeccCCCCChHHHHHHhhhhCCCCCCChhHHHHHhccccchHHHHHHHHhhhhhhhhhhHhhhhh
Q 042857 909 FSLLNSF-SFQHRVLLTGTPLQNNIGEMYNLLNFLQPASFPSLSSFEEKFNDLTTTQKVEELKKLVAPHMLRRLKKDAMQ 987 (1404)
Q Consensus 909 ~~~L~~l-~~~~rLLLTGTPlqNnl~EL~sLL~fL~P~~f~s~~~F~~~f~d~~~~~~i~~L~~lL~p~mLRR~K~dV~~ 987 (1404)
...+... ...+.|+|||||+...+. +. .|.++. .. +..
T Consensus 400 r~~l~~~~~~~~iL~~SATp~prtl~----~~----------------~~g~~~-------------~s--------~i~ 438 (681)
T PRK10917 400 RLALREKGENPHVLVMTATPIPRTLA----MT----------------AYGDLD-------------VS--------VID 438 (681)
T ss_pred HHHHHhcCCCCCEEEEeCCCCHHHHH----HH----------------HcCCCc-------------eE--------EEe
Confidence 3444433 356789999999653321 00 011100 00 011
Q ss_pred cCCCceE-E-EEEecCCHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCcHHHHHHH
Q 042857 988 NIPPKTE-R-MVPVELSSIQAEYYRAMLTKNYQILRNIGKGVAQQSMLNIVMQLRKVCNHPYLIPGTEPDSGSVEFLHEM 1065 (1404)
Q Consensus 988 ~LPpk~e-~-iV~V~LS~~Qk~~Y~~il~~n~~~L~~~~kg~~~~sllnilm~LRK~cnHP~L~~~~e~~~~~~e~l~~~ 1065 (1404)
.+|+... . ...+...
T Consensus 439 ~~p~~r~~i~~~~~~~~--------------------------------------------------------------- 455 (681)
T PRK10917 439 ELPPGRKPITTVVIPDS--------------------------------------------------------------- 455 (681)
T ss_pred cCCCCCCCcEEEEeCcc---------------------------------------------------------------
Confidence 2222111 0 0000000
Q ss_pred HHhhhhHHHHHHHHHHHHHHcCCeEEEEecchh--------HHHHHHHHHhhhcCCceEEEEeCCCCHHHHHHHHHHHhc
Q 042857 1066 RIKASAKLTLLHSMLKVLYKEGHRVLIFSQMTK--------LLDILEDYLNIEFGPKTYERVDGSVSVGDRQAAITRFNQ 1137 (1404)
Q Consensus 1066 ~i~~SgKl~~L~kLL~kl~~~G~KVLIFSq~~~--------~LDiLed~L~~~f~g~~y~rLdGs~s~~eRq~~Id~Fn~ 1137 (1404)
+...+.+.+....+.|++++|||..+. ....+.+.|...++++.+..+||.++..+|++++++|.+
T Consensus 456 ------~~~~~~~~i~~~~~~g~q~~v~~~~ie~s~~l~~~~~~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~ 529 (681)
T PRK10917 456 ------RRDEVYERIREEIAKGRQAYVVCPLIEESEKLDLQSAEETYEELQEAFPELRVGLLHGRMKPAEKDAVMAAFKA 529 (681)
T ss_pred ------cHHHHHHHHHHHHHcCCcEEEEEcccccccchhHHHHHHHHHHHHHHCCCCcEEEEeCCCCHHHHHHHHHHHHc
Confidence 001112223333467899999998542 234556667666667889999999999999999999987
Q ss_pred CCCceEEEeecccccccccccCCCEEEEEcCCC-CHhHHHHHHHhhhccCCCCcE
Q 042857 1138 DKSRFVFLLSTRSCGLGINLATADTVIIYDSDF-NPHADIQAMNRAHRIGQSKRL 1191 (1404)
Q Consensus 1138 ~~s~~VfLLSTrAgG~GINL~~AdtVIi~DsdW-NP~~d~QAigRahRiGQ~k~V 1191 (1404)
+... +|++|.+.++|||++.+++||+++++. ....+.|+.||++|.|....+
T Consensus 530 g~~~--ILVaT~vie~GiDip~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~ 582 (681)
T PRK10917 530 GEID--ILVATTVIEVGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGAAQSYC 582 (681)
T ss_pred CCCC--EEEECcceeeCcccCCCcEEEEeCCCCCCHHHHHHHhhcccCCCCceEE
Confidence 6655 899999999999999999999999974 678899999999999875444
No 39
>PRK10689 transcription-repair coupling factor; Provisional
Probab=99.90 E-value=6.3e-22 Score=260.84 Aligned_cols=360 Identities=18% Similarity=0.221 Sum_probs=240.1
Q ss_pred CCCHHHHHHHHHHHHhhccC--CcEEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEeCCCCh-HHHHHHHHHHCCC-
Q 042857 755 ALFPHQLEALNWLRKCWHKS--KNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLSTM-PNWLAEFALWAPN- 830 (1404)
Q Consensus 755 ~L~pyQlegVnwL~~~~~~~--~~~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP~Sll-~nW~rEf~kw~P~- 830 (1404)
.+.|.|.+++.-+...+... .+.++..++|.|||.+++.++..... ....+||+||+..| .|..+.|.+++..
T Consensus 600 ~~T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TGsGKT~val~aa~~~~~---~g~qvlvLvPT~eLA~Q~~~~f~~~~~~~ 676 (1147)
T PRK10689 600 ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVE---NHKQVAVLVPTTLLAQQHYDNFRDRFANW 676 (1147)
T ss_pred CCCHHHHHHHHHHHHHhhcCCCCCEEEEcCCCcCHHHHHHHHHHHHHH---cCCeEEEEeCcHHHHHHHHHHHHHhhccC
Confidence 68999999999888865543 68999999999999987744433322 23579999999877 7888888887654
Q ss_pred -CcEEEEecchhHHHHHHHhhhccCCCCccccccCCCCceEEEeeHHHHHhhhccccCCCceEEEEccccccCCCccHHH
Q 042857 831 -LNVVEYHGCAKARAIIRQYEWHASDPDNLNKKTSSYKFNVLLTTYEMILADSSHLRGVPWEVLVVDEGHRLKNSGSKLF 909 (1404)
Q Consensus 831 -l~Vvvy~G~~~~R~~ir~~E~~~~~~~~~~~~~~~~kfdVvITTYe~l~~d~~~L~~i~w~lVIVDEAHrlKN~~Sk~~ 909 (1404)
+++.+++|...........+ .......+|||+|++.+..+.. -.++++|||||+|++. ....
T Consensus 677 ~v~i~~l~g~~s~~e~~~il~-----------~l~~g~~dIVVgTp~lL~~~v~---~~~L~lLVIDEahrfG---~~~~ 739 (1147)
T PRK10689 677 PVRIEMLSRFRSAKEQTQILA-----------EAAEGKIDILIGTHKLLQSDVK---WKDLGLLIVDEEHRFG---VRHK 739 (1147)
T ss_pred CceEEEEECCCCHHHHHHHHH-----------HHHhCCCCEEEECHHHHhCCCC---HhhCCEEEEechhhcc---hhHH
Confidence 45666666543332221111 0112357899999988764322 2357899999999983 3334
Q ss_pred HHHhhcc-cccEEEEeccCCCCChHHHHHHhhhh-CCCCCCChhHHHHHhccccchHHHHHHHHhhhhhhhhhhHhhhhh
Q 042857 910 SLLNSFS-FQHRVLLTGTPLQNNIGEMYNLLNFL-QPASFPSLSSFEEKFNDLTTTQKVEELKKLVAPHMLRRLKKDAMQ 987 (1404)
Q Consensus 910 ~~L~~l~-~~~rLLLTGTPlqNnl~EL~sLL~fL-~P~~f~s~~~F~~~f~d~~~~~~i~~L~~lL~p~mLRR~K~dV~~ 987 (1404)
..++.+. ....|+|||||++..+.- .+.++ ++. ++
T Consensus 740 e~lk~l~~~~qvLl~SATpiprtl~l---~~~gl~d~~-------------------------------~I--------- 776 (1147)
T PRK10689 740 ERIKAMRADVDILTLTATPIPRTLNM---AMSGMRDLS-------------------------------II--------- 776 (1147)
T ss_pred HHHHhcCCCCcEEEEcCCCCHHHHHH---HHhhCCCcE-------------------------------EE---------
Confidence 5555554 456799999997654321 11111 110 00
Q ss_pred cCCCceEE---EEEecCCHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCcHHHHHH
Q 042857 988 NIPPKTER---MVPVELSSIQAEYYRAMLTKNYQILRNIGKGVAQQSMLNIVMQLRKVCNHPYLIPGTEPDSGSVEFLHE 1064 (1404)
Q Consensus 988 ~LPpk~e~---iV~V~LS~~Qk~~Y~~il~~n~~~L~~~~kg~~~~sllnilm~LRK~cnHP~L~~~~e~~~~~~e~l~~ 1064 (1404)
..|+.... .+.......
T Consensus 777 ~~~p~~r~~v~~~~~~~~~~------------------------------------------------------------ 796 (1147)
T PRK10689 777 ATPPARRLAVKTFVREYDSL------------------------------------------------------------ 796 (1147)
T ss_pred ecCCCCCCCceEEEEecCcH------------------------------------------------------------
Confidence 01111100 000000000
Q ss_pred HHHhhhhHHHHHHHHHHHHHHcCCeEEEEecchhHHHHHHHHHhhhcCCceEEEEeCCCCHHHHHHHHHHHhcCCCceEE
Q 042857 1065 MRIKASAKLTLLHSMLKVLYKEGHRVLIFSQMTKLLDILEDYLNIEFGPKTYERVDGSVSVGDRQAAITRFNQDKSRFVF 1144 (1404)
Q Consensus 1065 ~~i~~SgKl~~L~kLL~kl~~~G~KVLIFSq~~~~LDiLed~L~~~f~g~~y~rLdGs~s~~eRq~~Id~Fn~~~s~~Vf 1144 (1404)
.....++..+. .|.+|+||++.+..++.+...|...+++..+..+||.|+..+|.+++.+|.++... +
T Consensus 797 ---------~~k~~il~el~-r~gqv~vf~n~i~~ie~la~~L~~~~p~~~v~~lHG~m~q~eRe~im~~Fr~Gk~~--V 864 (1147)
T PRK10689 797 ---------VVREAILREIL-RGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFN--V 864 (1147)
T ss_pred ---------HHHHHHHHHHh-cCCeEEEEECCHHHHHHHHHHHHHhCCCCcEEEEeCCCCHHHHHHHHHHHHhcCCC--E
Confidence 00111222222 46789999999999999999999887788999999999999999999999877655 8
Q ss_pred EeecccccccccccCCCEEEEEcCC-CCHhHHHHHHHhhhccCCCCcEEEEEEeeCCCHHHHHHHHHHHHHhhhHHHhc-
Q 042857 1145 LLSTRSCGLGINLATADTVIIYDSD-FNPHADIQAMNRAHRIGQSKRLLVYRLVVRASVEERILQLAKKKLMLDQLFVN- 1222 (1404)
Q Consensus 1145 LLSTrAgG~GINL~~AdtVIi~Dsd-WNP~~d~QAigRahRiGQ~k~V~VYrLvt~~TvEE~Ilq~a~~Kl~L~~~vv~- 1222 (1404)
|++|.+.++|||++.+++||+.+++ |+..++.|+.||++|.|... .+|-+...+. .+-+.+.+++.....+.+
T Consensus 865 LVaTdIierGIDIP~v~~VIi~~ad~fglaq~~Qr~GRvGR~g~~g--~a~ll~~~~~---~~~~~~~~rl~~~~~~~~l 939 (1147)
T PRK10689 865 LVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQA--YAWLLTPHPK---AMTTDAQKRLEAIASLEDL 939 (1147)
T ss_pred EEECchhhcccccccCCEEEEecCCCCCHHHHHHHhhccCCCCCce--EEEEEeCCCc---ccCHHHHHHHHHHHHhcCC
Confidence 9999999999999999999999886 78889999999999998754 4454443321 122234444444344433
Q ss_pred CCCChHHHHHHHHhhHHHHhcCCCCCCCCCCC
Q 042857 1223 KSGSQKEVEDILRWGTEELFNDSPGINGKDMG 1254 (1404)
Q Consensus 1223 ~~~s~~eledilk~Ga~~Lf~~~~~~~~~d~~ 1254 (1404)
++|..-.+.||--.|+.+||...+..+-...+
T Consensus 940 g~gf~~a~~dl~~rg~g~~~g~~q~g~~~~~g 971 (1147)
T PRK10689 940 GAGFALATHDLEIRGAGELLGEEQSGQMETIG 971 (1147)
T ss_pred cchHHHHHHHHHhcCCccCCCCccCCCccccC
Confidence 44556667788888999999877665544443
No 40
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=99.90 E-value=1.3e-21 Score=237.59 Aligned_cols=302 Identities=18% Similarity=0.261 Sum_probs=226.9
Q ss_pred CCCHHHHHHHHHHHHhhccC--CcEEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEeCCCCh-HHHHHHHHHHCC--
Q 042857 755 ALFPHQLEALNWLRKCWHKS--KNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLSTM-PNWLAEFALWAP-- 829 (1404)
Q Consensus 755 ~L~pyQlegVnwL~~~~~~~--~~~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP~Sll-~nW~rEf~kw~P-- 829 (1404)
+|...|..+++-+..-+... .+-+|..|+|.|||++|+..+...+..+. -+.+.+|+.+| .|..+.|.+|++
T Consensus 262 ~LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai~~G~---Q~ALMAPTEILA~QH~~~~~~~l~~~ 338 (677)
T COG1200 262 KLTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAAIEAGY---QAALMAPTEILAEQHYESLRKWLEPL 338 (677)
T ss_pred CccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHHHHHHcCC---eeEEeccHHHHHHHHHHHHHHHhhhc
Confidence 68899999999998877655 56799999999999999888777765433 46899999988 789999999997
Q ss_pred CCcEEEEecchhHHHHHHHhhhccCCCCccccccCCCCceEEEeeHHHHHhhhccccCCCceEEEEccccccCCCccHHH
Q 042857 830 NLNVVEYHGCAKARAIIRQYEWHASDPDNLNKKTSSYKFNVLLTTYEMILADSSHLRGVPWEVLVVDEGHRLKNSGSKLF 909 (1404)
Q Consensus 830 ~l~Vvvy~G~~~~R~~ir~~E~~~~~~~~~~~~~~~~kfdVvITTYe~l~~d~~~L~~i~w~lVIVDEAHrlKN~~Sk~~ 909 (1404)
+++|....|+-.........+ ....+..++||.|+..+.....+ .+..+||+||-||+. ....
T Consensus 339 ~i~V~lLtG~~kgk~r~~~l~-----------~l~~G~~~ivVGTHALiQd~V~F---~~LgLVIiDEQHRFG---V~QR 401 (677)
T COG1200 339 GIRVALLTGSLKGKARKEILE-----------QLASGEIDIVVGTHALIQDKVEF---HNLGLVIIDEQHRFG---VHQR 401 (677)
T ss_pred CCeEEEeecccchhHHHHHHH-----------HHhCCCCCEEEEcchhhhcceee---cceeEEEEecccccc---HHHH
Confidence 578888888755443222222 22346789999999999977665 567899999999994 4444
Q ss_pred HHHhh-cc-cccEEEEeccCCCCChHHHHHHhhhhCCCCCCChhHHHHHhccccchHHHHHHHHhhhhhhhhhhHhhhhh
Q 042857 910 SLLNS-FS-FQHRVLLTGTPLQNNIGEMYNLLNFLQPASFPSLSSFEEKFNDLTTTQKVEELKKLVAPHMLRRLKKDAMQ 987 (1404)
Q Consensus 910 ~~L~~-l~-~~~rLLLTGTPlqNnl~EL~sLL~fL~P~~f~s~~~F~~~f~d~~~~~~i~~L~~lL~p~mLRR~K~dV~~ 987 (1404)
..|+. -. .+|.|.||||||..++. ...|+++.. .++.
T Consensus 402 ~~L~~KG~~~Ph~LvMTATPIPRTLA--------------------lt~fgDldv---------------------S~Id 440 (677)
T COG1200 402 LALREKGEQNPHVLVMTATPIPRTLA--------------------LTAFGDLDV---------------------SIID 440 (677)
T ss_pred HHHHHhCCCCCcEEEEeCCCchHHHH--------------------HHHhccccc---------------------hhhc
Confidence 44443 34 58999999999999876 234454432 1456
Q ss_pred cCCCceEEEEEecCCHHHH-HHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCcHHHHHHHH
Q 042857 988 NIPPKTERMVPVELSSIQA-EYYRAMLTKNYQILRNIGKGVAQQSMLNIVMQLRKVCNHPYLIPGTEPDSGSVEFLHEMR 1066 (1404)
Q Consensus 988 ~LPpk~e~iV~V~LS~~Qk-~~Y~~il~~n~~~L~~~~kg~~~~sllnilm~LRK~cnHP~L~~~~e~~~~~~e~l~~~~ 1066 (1404)
++|+.+--+...-+...++ ++|..
T Consensus 441 ElP~GRkpI~T~~i~~~~~~~v~e~------------------------------------------------------- 465 (677)
T COG1200 441 ELPPGRKPITTVVIPHERRPEVYER------------------------------------------------------- 465 (677)
T ss_pred cCCCCCCceEEEEeccccHHHHHHH-------------------------------------------------------
Confidence 7888855444433332221 12221
Q ss_pred HhhhhHHHHHHHHHHHHHHcCCeEEEEecchh--------HHHHHHHHHhhhcCCceEEEEeCCCCHHHHHHHHHHHhcC
Q 042857 1067 IKASAKLTLLHSMLKVLYKEGHRVLIFSQMTK--------LLDILEDYLNIEFGPKTYERVDGSVSVGDRQAAITRFNQD 1138 (1404)
Q Consensus 1067 i~~SgKl~~L~kLL~kl~~~G~KVLIFSq~~~--------~LDiLed~L~~~f~g~~y~rLdGs~s~~eRq~~Id~Fn~~ 1138 (1404)
+.+-...|+++.+.|..+. ....+...|...|+++.+..+||.|+.++++++|.+|+++
T Consensus 466 -------------i~~ei~~GrQaY~VcPLIeESE~l~l~~a~~~~~~L~~~~~~~~vgL~HGrm~~~eKd~vM~~Fk~~ 532 (677)
T COG1200 466 -------------IREEIAKGRQAYVVCPLIEESEKLELQAAEELYEELKSFLPELKVGLVHGRMKPAEKDAVMEAFKEG 532 (677)
T ss_pred -------------HHHHHHcCCEEEEEeccccccccchhhhHHHHHHHHHHHcccceeEEEecCCChHHHHHHHHHHHcC
Confidence 1112236777777777653 3345556666667888999999999999999999999987
Q ss_pred CCceEEEeecccccccccccCCCEEEEEcCC-CCHhHHHHHHHhhhccCC
Q 042857 1139 KSRFVFLLSTRSCGLGINLATADTVIIYDSD-FNPHADIQAMNRAHRIGQ 1187 (1404)
Q Consensus 1139 ~s~~VfLLSTrAgG~GINL~~AdtVIi~Dsd-WNP~~d~QAigRahRiGQ 1187 (1404)
... +|+||.+..+|||+++|..+||++++ +--++..|-.||++|-+.
T Consensus 533 e~~--ILVaTTVIEVGVdVPnATvMVIe~AERFGLaQLHQLRGRVGRG~~ 580 (677)
T COG1200 533 EID--ILVATTVIEVGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGDL 580 (677)
T ss_pred CCc--EEEEeeEEEecccCCCCeEEEEechhhhhHHHHHHhccccCCCCc
Confidence 777 89999999999999999999999996 899999999999999554
No 41
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.90 E-value=8.6e-22 Score=246.15 Aligned_cols=315 Identities=17% Similarity=0.230 Sum_probs=212.8
Q ss_pred CCCHHHHHHHHHHHHhhccCCcEEEEcCCCchHHHHHHHHHHHHHhhcc-------CCCcEEEEeCCCCh-HHHHHHHHH
Q 042857 755 ALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFK-------AKLPCLVLVPLSTM-PNWLAEFAL 826 (1404)
Q Consensus 755 ~L~pyQlegVnwL~~~~~~~~~~ILADEMGLGKTiqaIa~L~~L~~~~~-------~~gP~LIVvP~Sll-~nW~rEf~k 826 (1404)
.++|.|..++..++. +.++|+..++|.|||+.++..+...+.... ....+|||+|...| .|+..++.+
T Consensus 31 ~ptpiQ~~~ip~~l~----G~Dvi~~ApTGSGKTlafllpil~~l~~~~~~~~~~~~~~raLIl~PTreLa~Qi~~~~~~ 106 (572)
T PRK04537 31 RCTPIQALTLPVALP----GGDVAGQAQTGTGKTLAFLVAVMNRLLSRPALADRKPEDPRALILAPTRELAIQIHKDAVK 106 (572)
T ss_pred CCCHHHHHHHHHHhC----CCCEEEEcCCCCcHHHHHHHHHHHHHHhcccccccccCCceEEEEeCcHHHHHHHHHHHHH
Confidence 588999999988765 899999999999999988776655432211 12468999999755 889999998
Q ss_pred HCC--CCcEEEEecchhHHHHHHHhhhccCCCCccccccCCCCceEEEeeHHHHHhhhc---cccCCCceEEEEcccccc
Q 042857 827 WAP--NLNVVEYHGCAKARAIIRQYEWHASDPDNLNKKTSSYKFNVLLTTYEMILADSS---HLRGVPWEVLVVDEGHRL 901 (1404)
Q Consensus 827 w~P--~l~Vvvy~G~~~~R~~ir~~E~~~~~~~~~~~~~~~~kfdVvITTYe~l~~d~~---~L~~i~w~lVIVDEAHrl 901 (1404)
|.. ++++..++|............ ..++|||+|++.+..... .+....+.+|||||||++
T Consensus 107 l~~~~~i~v~~l~Gg~~~~~q~~~l~---------------~~~dIiV~TP~rL~~~l~~~~~~~l~~v~~lViDEAh~l 171 (572)
T PRK04537 107 FGADLGLRFALVYGGVDYDKQRELLQ---------------QGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEADRM 171 (572)
T ss_pred HhccCCceEEEEECCCCHHHHHHHHh---------------CCCCEEEECHHHHHHHHHhccccchhheeeeEecCHHHH
Confidence 864 456777888655433222211 247899999998876432 233345678999999998
Q ss_pred CCCc--cHHHHHHhhcc---cccEEEEeccCCCCChHHHHHHhhhhCCCCCCChhHHHHHhccccchHHHHHHHHhhhhh
Q 042857 902 KNSG--SKLFSLLNSFS---FQHRVLLTGTPLQNNIGEMYNLLNFLQPASFPSLSSFEEKFNDLTTTQKVEELKKLVAPH 976 (1404)
Q Consensus 902 KN~~--Sk~~~~L~~l~---~~~rLLLTGTPlqNnl~EL~sLL~fL~P~~f~s~~~F~~~f~d~~~~~~i~~L~~lL~p~ 976 (1404)
-..+ ..+..++..+. ....+++|||.-. .+.++.. .++. .|.
T Consensus 172 ld~gf~~~i~~il~~lp~~~~~q~ll~SATl~~-~v~~l~~--~~l~------------------------------~p~ 218 (572)
T PRK04537 172 FDLGFIKDIRFLLRRMPERGTRQTLLFSATLSH-RVLELAY--EHMN------------------------------EPE 218 (572)
T ss_pred hhcchHHHHHHHHHhcccccCceEEEEeCCccH-HHHHHHH--HHhc------------------------------CCc
Confidence 6532 22334444444 2346889999521 1111100 0000 000
Q ss_pred hhhhhHhhhhhcCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHhCCCCCCCCCCCCC
Q 042857 977 MLRRLKKDAMQNIPPKTERMVPVELSSIQAEYYRAMLTKNYQILRNIGKGVAQQSMLNIVMQLRKVCNHPYLIPGTEPDS 1056 (1404)
Q Consensus 977 mLRR~K~dV~~~LPpk~e~iV~V~LS~~Qk~~Y~~il~~n~~~L~~~~kg~~~~sllnilm~LRK~cnHP~L~~~~e~~~ 1056 (1404)
.+...... ..+....+.+.+.
T Consensus 219 ~i~v~~~~---~~~~~i~q~~~~~-------------------------------------------------------- 239 (572)
T PRK04537 219 KLVVETET---ITAARVRQRIYFP-------------------------------------------------------- 239 (572)
T ss_pred EEEecccc---ccccceeEEEEec--------------------------------------------------------
Confidence 00000000 0000000000000
Q ss_pred CcHHHHHHHHHhhhhHHHHHHHHHHHHHHcCCeEEEEecchhHHHHHHHHHhhhcCCceEEEEeCCCCHHHHHHHHHHHh
Q 042857 1057 GSVEFLHEMRIKASAKLTLLHSMLKVLYKEGHRVLIFSQMTKLLDILEDYLNIEFGPKTYERVDGSVSVGDRQAAITRFN 1136 (1404)
Q Consensus 1057 ~~~e~l~~~~i~~SgKl~~L~kLL~kl~~~G~KVLIFSq~~~~LDiLed~L~~~f~g~~y~rLdGs~s~~eRq~~Id~Fn 1136 (1404)
....|+.+|..++.. ..+.++|||+.....++.|.++|... ++.+..++|.++..+|..+++.|.
T Consensus 240 -----------~~~~k~~~L~~ll~~--~~~~k~LVF~nt~~~ae~l~~~L~~~--g~~v~~lhg~l~~~eR~~il~~Fr 304 (572)
T PRK04537 240 -----------ADEEKQTLLLGLLSR--SEGARTMVFVNTKAFVERVARTLERH--GYRVGVLSGDVPQKKRESLLNRFQ 304 (572)
T ss_pred -----------CHHHHHHHHHHHHhc--ccCCcEEEEeCCHHHHHHHHHHHHHc--CCCEEEEeCCCCHHHHHHHHHHHH
Confidence 011234444444432 35789999999999999999999876 789999999999999999999998
Q ss_pred cCCCceEEEeecccccccccccCCCEEEEEcCCCCHhHHHHHHHhhhccCCCCcEEEEEEeeC
Q 042857 1137 QDKSRFVFLLSTRSCGLGINLATADTVIIYDSDFNPHADIQAMNRAHRIGQSKRLLVYRLVVR 1199 (1404)
Q Consensus 1137 ~~~s~~VfLLSTrAgG~GINL~~AdtVIi~DsdWNP~~d~QAigRahRiGQ~k~V~VYrLvt~ 1199 (1404)
++... +|++|.++++|||+..+++||+||.++++..|+|++||++|.|....+. -|++.
T Consensus 305 ~G~~~--VLVaTdv~arGIDip~V~~VInyd~P~s~~~yvqRiGRaGR~G~~G~ai--~~~~~ 363 (572)
T PRK04537 305 KGQLE--ILVATDVAARGLHIDGVKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAI--SFACE 363 (572)
T ss_pred cCCCe--EEEEehhhhcCCCccCCCEEEEcCCCCCHHHHhhhhcccccCCCCceEE--EEecH
Confidence 76554 8999999999999999999999999999999999999999999865543 44544
No 42
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=99.90 E-value=1.7e-21 Score=239.54 Aligned_cols=408 Identities=19% Similarity=0.212 Sum_probs=236.1
Q ss_pred CCCCHHHHHHHHHHHHhhccCCcEEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEeCCCCh-HHHHHHHHHHCCCCc
Q 042857 754 GALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLSTM-PNWLAEFALWAPNLN 832 (1404)
Q Consensus 754 ~~L~pyQlegVnwL~~~~~~~~~~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP~Sll-~nW~rEf~kw~P~l~ 832 (1404)
..||+||.+-+.-.+ +.|+|+|..+|+|||..|+.++...++.... +.+++++|..-| .|-...|..++-.-.
T Consensus 61 ~~lR~YQ~eivq~AL-----gkNtii~lPTG~GKTfIAa~Vm~nh~rw~p~-~KiVF~aP~~pLv~QQ~a~~~~~~~~~~ 134 (746)
T KOG0354|consen 61 LELRNYQEELVQPAL-----GKNTIIALPTGSGKTFIAAVIMKNHFEWRPK-GKVVFLAPTRPLVNQQIACFSIYLIPYS 134 (746)
T ss_pred ccccHHHHHHhHHhh-----cCCeEEEeecCCCccchHHHHHHHHHhcCCc-ceEEEeeCCchHHHHHHHHHhhccCccc
Confidence 479999999886543 6999999999999999998888877755544 789999999744 666677777663345
Q ss_pred EEEEecchhHHHHHHHhhhccCCCCccccccCCCCceEEEeeHHHHHhhhccccC---CCceEEEEccccccCCCcc--H
Q 042857 833 VVEYHGCAKARAIIRQYEWHASDPDNLNKKTSSYKFNVLLTTYEMILADSSHLRG---VPWEVLVVDEGHRLKNSGS--K 907 (1404)
Q Consensus 833 Vvvy~G~~~~R~~ir~~E~~~~~~~~~~~~~~~~kfdVvITTYe~l~~d~~~L~~---i~w~lVIVDEAHrlKN~~S--k 907 (1404)
+....|+...+.-. ... ....+|++.|++++.++...... -.|.++|||||||.....+ .
T Consensus 135 ~T~~l~~~~~~~~r-~~i--------------~~s~~vff~TpQil~ndL~~~~~~~ls~fs~iv~DE~Hra~kn~~Y~~ 199 (746)
T KOG0354|consen 135 VTGQLGDTVPRSNR-GEI--------------VASKRVFFRTPQILENDLKSGLHDELSDFSLIVFDECHRTSKNHPYNN 199 (746)
T ss_pred ceeeccCccCCCch-hhh--------------hcccceEEeChHhhhhhcccccccccceEEEEEEcccccccccccHHH
Confidence 55555542222100 011 12458999999999987644333 3489999999999854322 2
Q ss_pred HHHHHhhcc--cccEEEEeccCCCCChHHHHHHhhhhCCCC-CCChhHHHHHhccc------------cchHHHHHHHHh
Q 042857 908 LFSLLNSFS--FQHRVLLTGTPLQNNIGEMYNLLNFLQPAS-FPSLSSFEEKFNDL------------TTTQKVEELKKL 972 (1404)
Q Consensus 908 ~~~~L~~l~--~~~rLLLTGTPlqNnl~EL~sLL~fL~P~~-f~s~~~F~~~f~d~------------~~~~~i~~L~~l 972 (1404)
..+.+..++ ....|+|||||- ++.....+.+.=|.-.. ..........|..+ ........|..+
T Consensus 200 Vmr~~l~~k~~~~qILgLTASpG-~~~~~v~~~I~~L~asldvr~~ssi~~~y~~lr~~~~i~v~~~~~~~~~~~~f~~~ 278 (746)
T KOG0354|consen 200 IMREYLDLKNQGNQILGLTASPG-SKLEQVQNVIDNLCASLDVRTESSIKSNYEELREHVQIPVDLSLCERDIEDPFGMI 278 (746)
T ss_pred HHHHHHHhhhccccEEEEecCCC-ccHHHHHHHHHhhheecccchhhhhhhhHHHHhccCcccCcHHHhhhhhhhhHHHH
Confidence 332333333 225678999997 66655554443333221 01111112222111 011223456667
Q ss_pred hhhhhhhhhHhhhhhcCCCceEEEEEecCCHH-------------HHH-HHHHHHHH-HHHHHHhhccchhhHHHHHHHH
Q 042857 973 VAPHMLRRLKKDAMQNIPPKTERMVPVELSSI-------------QAE-YYRAMLTK-NYQILRNIGKGVAQQSMLNIVM 1037 (1404)
Q Consensus 973 L~p~mLRR~K~dV~~~LPpk~e~iV~V~LS~~-------------Qk~-~Y~~il~~-n~~~L~~~~kg~~~~sllnilm 1037 (1404)
+.|+|.+-... .|.+....--.-+.... |+- +|..++-. +...+.. .+.. +.+.+.
T Consensus 279 i~p~l~~l~~~----~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~f~~~~~~~~~~~ll~~--~gir---~~~~l~ 349 (746)
T KOG0354|consen 279 IEPLLQQLQEE----GLIEISDKSTSYEQWVVQAEKAAAPNGPENQRNCFYALHLRKYNLALLIS--DGIR---FVDALD 349 (746)
T ss_pred HHHHHHHHHhc----CccccccccccccchhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHhh--cchh---hHHHHh
Confidence 77765443211 22211111100011011 110 11111100 0000000 0000 001111
Q ss_pred HHHHHhCCC----CCCCCCCCCCC--cHHHHH------HHHHhhhhHHHHHHHHHHHHHHc--CCeEEEEecchhHHHHH
Q 042857 1038 QLRKVCNHP----YLIPGTEPDSG--SVEFLH------EMRIKASAKLTLLHSMLKVLYKE--GHRVLIFSQMTKLLDIL 1103 (1404)
Q Consensus 1038 ~LRK~cnHP----~L~~~~e~~~~--~~e~l~------~~~i~~SgKl~~L~kLL~kl~~~--G~KVLIFSq~~~~LDiL 1103 (1404)
.+.....-- |+....+.... ....+. .......+|+..|.++|...... ..|+|||+.++...+.|
T Consensus 350 ~~~~f~~e~~~~k~~~~~~e~~~~~~~~~~m~~~~~l~~~~~~~npkle~l~~~l~e~f~~~~dsR~IIFve~R~sa~~l 429 (746)
T KOG0354|consen 350 YLEDFYEEVALKKYLKLELEARLIRNFTENMNELEHLSLDPPKENPKLEKLVEILVEQFEQNPDSRTIIFVETRESALAL 429 (746)
T ss_pred hhhhhccccchhHHHHHHhcchhhHHHHHHHHhhhhhhcCCCccChhHHHHHHHHHHHhhcCCCccEEEEEehHHHHHHH
Confidence 110000000 00000000000 000000 00012478999999999887765 46999999999999999
Q ss_pred HHHHh-hhcCCceEEEEeC--------CCCHHHHHHHHHHHhcCCCceEEEeecccccccccccCCCEEEEEcCCCCHhH
Q 042857 1104 EDYLN-IEFGPKTYERVDG--------SVSVGDRQAAITRFNQDKSRFVFLLSTRSCGLGINLATADTVIIYDSDFNPHA 1174 (1404)
Q Consensus 1104 ed~L~-~~f~g~~y~rLdG--------s~s~~eRq~~Id~Fn~~~s~~VfLLSTrAgG~GINL~~AdtVIi~DsdWNP~~ 1174 (1404)
..||. ....+++...+-| +|++.+.++.|+.|+++... +|++|.+|.+|||+..||.||.||..-||-.
T Consensus 430 ~~~l~~~~~~~ir~~~fiGq~~s~~~~gmtqk~Q~evl~~Fr~G~~N--vLVATSV~EEGLDI~ec~lVIcYd~~snpIr 507 (746)
T KOG0354|consen 430 KKWLLQLHELGIKAEIFIGQGKSTQSTGMTQKEQKEVLDKFRDGEIN--VLVATSVAEEGLDIGECNLVICYDYSSNPIR 507 (746)
T ss_pred HHHHHhhhhcccccceeeeccccccccccCHHHHHHHHHHHhCCCcc--EEEEecchhccCCcccccEEEEecCCccHHH
Confidence 99998 3333455555555 67889999999999986666 8999999999999999999999999999999
Q ss_pred HHHHHHhhhccCCCCcEEEEEEee
Q 042857 1175 DIQAMNRAHRIGQSKRLLVYRLVV 1198 (1404)
Q Consensus 1175 d~QAigRahRiGQ~k~V~VYrLvt 1198 (1404)
.+||+|| +|--+. .++.|.+
T Consensus 508 mIQrrGR-gRa~ns---~~vll~t 527 (746)
T KOG0354|consen 508 MVQRRGR-GRARNS---KCVLLTT 527 (746)
T ss_pred HHHHhcc-ccccCC---eEEEEEc
Confidence 9999999 775443 4444444
No 43
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.90 E-value=5.9e-22 Score=237.60 Aligned_cols=315 Identities=20% Similarity=0.236 Sum_probs=227.4
Q ss_pred CCCHHHHHHHHHHHHhhccCCcEEEEcCCCchHHHHHHHHHHHHHhh-----ccCCCc-EEEEeCCCCh-HHHHHHHHHH
Q 042857 755 ALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCE-----FKAKLP-CLVLVPLSTM-PNWLAEFALW 827 (1404)
Q Consensus 755 ~L~pyQlegVnwL~~~~~~~~~~ILADEMGLGKTiqaIa~L~~L~~~-----~~~~gP-~LIVvP~Sll-~nW~rEf~kw 827 (1404)
.+.|-|..+.-.++. |+++|...++|.|||+..+.-+...+.. ....+| +||++|+.-| .|-++++..+
T Consensus 113 ~PtpIQaq~wp~~l~----GrD~v~iA~TGSGKTLay~lP~i~~l~~~~~~~~~~~~P~vLVL~PTRELA~QV~~~~~~~ 188 (519)
T KOG0331|consen 113 KPTPIQAQGWPIALS----GRDLVGIARTGSGKTLAYLLPAIVHLNNEQGKLSRGDGPIVLVLAPTRELAVQVQAEAREF 188 (519)
T ss_pred CCchhhhcccceecc----CCceEEEeccCCcchhhhhhHHHHHHHhccccccCCCCCeEEEEcCcHHHHHHHHHHHHHH
Confidence 577888777665555 8999999999999999876544333332 123345 8999999876 6888999999
Q ss_pred CCCCc--EEEEecchhHHHHHHHhhhccCCCCccccccCCCCceEEEeeHHHHHhhh--ccccCCCceEEEEccccccCC
Q 042857 828 APNLN--VVEYHGCAKARAIIRQYEWHASDPDNLNKKTSSYKFNVLLTTYEMILADS--SHLRGVPWEVLVVDEGHRLKN 903 (1404)
Q Consensus 828 ~P~l~--Vvvy~G~~~~R~~ir~~E~~~~~~~~~~~~~~~~kfdVvITTYe~l~~d~--~~L~~i~w~lVIVDEAHrlKN 903 (1404)
...+. .++.+|+.....+++..+ ...+|+|+|+..+.... ..+.--+..++|+|||.+|-.
T Consensus 189 ~~~~~~~~~cvyGG~~~~~Q~~~l~---------------~gvdiviaTPGRl~d~le~g~~~l~~v~ylVLDEADrMld 253 (519)
T KOG0331|consen 189 GKSLRLRSTCVYGGAPKGPQLRDLE---------------RGVDVVIATPGRLIDLLEEGSLNLSRVTYLVLDEADRMLD 253 (519)
T ss_pred cCCCCccEEEEeCCCCccHHHHHHh---------------cCCcEEEeCChHHHHHHHcCCccccceeEEEeccHHhhhc
Confidence 76554 777777766666666553 36789999999998753 334444678999999999965
Q ss_pred --CccHHHHHHhhc-cccc-EEEEeccCCCCChHHHHHHhhhhCCCCCCChhHHHHHhccccchHHHHHHHHhhhhhhhh
Q 042857 904 --SGSKLFSLLNSF-SFQH-RVLLTGTPLQNNIGEMYNLLNFLQPASFPSLSSFEEKFNDLTTTQKVEELKKLVAPHMLR 979 (1404)
Q Consensus 904 --~~Sk~~~~L~~l-~~~~-rLLLTGTPlqNnl~EL~sLL~fL~P~~f~s~~~F~~~f~d~~~~~~i~~L~~lL~p~mLR 979 (1404)
...++.+.+..+ .... .|+.|+|- +. -+|
T Consensus 254 mGFe~qI~~Il~~i~~~~rQtlm~saTw----p~-------------------------------------------~v~ 286 (519)
T KOG0331|consen 254 MGFEPQIRKILSQIPRPDRQTLMFSATW----PK-------------------------------------------EVR 286 (519)
T ss_pred cccHHHHHHHHHhcCCCcccEEEEeeec----cH-------------------------------------------HHH
Confidence 557788888888 4443 57777773 01 111
Q ss_pred hhHhhhhhcCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCcH
Q 042857 980 RLKKDAMQNIPPKTERMVPVELSSIQAEYYRAMLTKNYQILRNIGKGVAQQSMLNIVMQLRKVCNHPYLIPGTEPDSGSV 1059 (1404)
Q Consensus 980 R~K~dV~~~LPpk~e~iV~V~LS~~Qk~~Y~~il~~n~~~L~~~~kg~~~~sllnilm~LRK~cnHP~L~~~~e~~~~~~ 1059 (1404)
.+..+.+. .| ....+.... .+ . ....+.++-..|
T Consensus 287 ~lA~~fl~-~~-~~i~ig~~~---~~--------~-----------------a~~~i~qive~~---------------- 320 (519)
T KOG0331|consen 287 QLAEDFLN-NP-IQINVGNKK---EL--------K-----------------ANHNIRQIVEVC---------------- 320 (519)
T ss_pred HHHHHHhc-Cc-eEEEecchh---hh--------h-----------------hhcchhhhhhhc----------------
Confidence 12222221 11 111111110 00 0 000111111111
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHH-HcCCeEEEEecchhHHHHHHHHHhhhcCCceEEEEeCCCCHHHHHHHHHHHhcC
Q 042857 1060 EFLHEMRIKASAKLTLLHSMLKVLY-KEGHRVLIFSQMTKLLDILEDYLNIEFGPKTYERVDGSVSVGDRQAAITRFNQD 1138 (1404)
Q Consensus 1060 e~l~~~~i~~SgKl~~L~kLL~kl~-~~G~KVLIFSq~~~~LDiLed~L~~~f~g~~y~rLdGs~s~~eRq~~Id~Fn~~ 1138 (1404)
...+|...|..+|..+. ..+.||||||+.....+.|..+|... ++...-|||..++.+|...++.|.++
T Consensus 321 --------~~~~K~~~l~~lL~~~~~~~~~KvIIFc~tkr~~~~l~~~l~~~--~~~a~~iHGd~sQ~eR~~~L~~FreG 390 (519)
T KOG0331|consen 321 --------DETAKLRKLGKLLEDISSDSEGKVIIFCETKRTCDELARNLRRK--GWPAVAIHGDKSQSERDWVLKGFREG 390 (519)
T ss_pred --------CHHHHHHHHHHHHHHHhccCCCcEEEEecchhhHHHHHHHHHhc--CcceeeecccccHHHHHHHHHhcccC
Confidence 23578888889998887 44569999999999999999999975 68899999999999999999999877
Q ss_pred CCceEEEeecccccccccccCCCEEEEEcCCCCHhHHHHHHHhhhccCCCCcEEE
Q 042857 1139 KSRFVFLLSTRSCGLGINLATADTVIIYDSDFNPHADIQAMNRAHRIGQSKRLLV 1193 (1404)
Q Consensus 1139 ~s~~VfLLSTrAgG~GINL~~AdtVIi~DsdWNP~~d~QAigRahRiGQ~k~V~V 1193 (1404)
... +|++|.++++||++...++||+||+|-|...|+||+||.+|-|++-....
T Consensus 391 ~~~--vLVATdVAaRGLDi~dV~lVInydfP~~vEdYVHRiGRTGRa~~~G~A~t 443 (519)
T KOG0331|consen 391 KSP--VLVATDVAARGLDVPDVDLVINYDFPNNVEDYVHRIGRTGRAGKKGTAIT 443 (519)
T ss_pred Ccc--eEEEcccccccCCCccccEEEeCCCCCCHHHHHhhcCccccCCCCceEEE
Confidence 766 99999999999999999999999999999999999999999988765543
No 44
>PTZ00424 helicase 45; Provisional
Probab=99.89 E-value=2.6e-21 Score=232.17 Aligned_cols=317 Identities=19% Similarity=0.235 Sum_probs=208.6
Q ss_pred CCCHHHHHHHHHHHHhhccCCcEEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEeCCCCh-HHHHHHHHHHCC--CC
Q 042857 755 ALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLSTM-PNWLAEFALWAP--NL 831 (1404)
Q Consensus 755 ~L~pyQlegVnwL~~~~~~~~~~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP~Sll-~nW~rEf~kw~P--~l 831 (1404)
.+.|+|..++..+.. +.+.|+..++|.|||+.++..+...+........+||++|...| .|+.+.+..++. .+
T Consensus 50 ~~~~~Q~~ai~~i~~----~~d~ii~apTGsGKT~~~~l~~l~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~ 125 (401)
T PTZ00424 50 KPSAIQQRGIKPILD----GYDTIGQAQSGTGKTATFVIAALQLIDYDLNACQALILAPTRELAQQIQKVVLALGDYLKV 125 (401)
T ss_pred CCCHHHHHHHHHHhC----CCCEEEECCCCChHHHHHHHHHHHHhcCCCCCceEEEECCCHHHHHHHHHHHHHHhhhcCc
Confidence 689999999988765 88999999999999998776655554333334568999998755 677777776653 34
Q ss_pred cEEEEecchhHHHHHHHhhhccCCCCccccccCCCCceEEEeeHHHHHhhh--ccccCCCceEEEEccccccCCCc--cH
Q 042857 832 NVVEYHGCAKARAIIRQYEWHASDPDNLNKKTSSYKFNVLLTTYEMILADS--SHLRGVPWEVLVVDEGHRLKNSG--SK 907 (1404)
Q Consensus 832 ~Vvvy~G~~~~R~~ir~~E~~~~~~~~~~~~~~~~kfdVvITTYe~l~~d~--~~L~~i~w~lVIVDEAHrlKN~~--Sk 907 (1404)
.+....|....+....... ...+|+|+|++.+.... ..+.--++++|||||+|++...+ ..
T Consensus 126 ~~~~~~g~~~~~~~~~~~~---------------~~~~Ivv~Tp~~l~~~l~~~~~~l~~i~lvViDEah~~~~~~~~~~ 190 (401)
T PTZ00424 126 RCHACVGGTVVRDDINKLK---------------AGVHMVVGTPGRVYDMIDKRHLRVDDLKLFILDEADEMLSRGFKGQ 190 (401)
T ss_pred eEEEEECCcCHHHHHHHHc---------------CCCCEEEECcHHHHHHHHhCCcccccccEEEEecHHHHHhcchHHH
Confidence 5555666654443322211 13589999998876432 22333457899999999986432 34
Q ss_pred HHHHHhhccc-ccEEEEeccCCCCChHHHHHHhhhhCCCCCCChhHHHHHhccccchHHHHHHHHhhhhhhhhhhHhhhh
Q 042857 908 LFSLLNSFSF-QHRVLLTGTPLQNNIGEMYNLLNFLQPASFPSLSSFEEKFNDLTTTQKVEELKKLVAPHMLRRLKKDAM 986 (1404)
Q Consensus 908 ~~~~L~~l~~-~~rLLLTGTPlqNnl~EL~sLL~fL~P~~f~s~~~F~~~f~d~~~~~~i~~L~~lL~p~mLRR~K~dV~ 986 (1404)
+...+..+.. ...+++|||+- +.+.++. ..|.. .|..+. .+.+ .
T Consensus 191 ~~~i~~~~~~~~~~i~~SAT~~-~~~~~~~------------------~~~~~--------------~~~~~~-~~~~-~ 235 (401)
T PTZ00424 191 IYDVFKKLPPDVQVALFSATMP-NEILELT------------------TKFMR--------------DPKRIL-VKKD-E 235 (401)
T ss_pred HHHHHhhCCCCcEEEEEEecCC-HHHHHHH------------------HHHcC--------------CCEEEE-eCCC-C
Confidence 5566666644 34688999962 2111111 00000 000000 0000 0
Q ss_pred hcCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCcHHHHHHHH
Q 042857 987 QNIPPKTERMVPVELSSIQAEYYRAMLTKNYQILRNIGKGVAQQSMLNIVMQLRKVCNHPYLIPGTEPDSGSVEFLHEMR 1066 (1404)
Q Consensus 987 ~~LPpk~e~iV~V~LS~~Qk~~Y~~il~~n~~~L~~~~kg~~~~sllnilm~LRK~cnHP~L~~~~e~~~~~~e~l~~~~ 1066 (1404)
..+.......+.+. .
T Consensus 236 ~~~~~~~~~~~~~~--~--------------------------------------------------------------- 250 (401)
T PTZ00424 236 LTLEGIRQFYVAVE--K--------------------------------------------------------------- 250 (401)
T ss_pred cccCCceEEEEecC--h---------------------------------------------------------------
Confidence 00000001111100 0
Q ss_pred HhhhhHHHHHHHHHHHHHHcCCeEEEEecchhHHHHHHHHHhhhcCCceEEEEeCCCCHHHHHHHHHHHhcCCCceEEEe
Q 042857 1067 IKASAKLTLLHSMLKVLYKEGHRVLIFSQMTKLLDILEDYLNIEFGPKTYERVDGSVSVGDRQAAITRFNQDKSRFVFLL 1146 (1404)
Q Consensus 1067 i~~SgKl~~L~kLL~kl~~~G~KVLIFSq~~~~LDiLed~L~~~f~g~~y~rLdGs~s~~eRq~~Id~Fn~~~s~~VfLL 1146 (1404)
...++..+..++.. ....++|||+.....++.+..+|... ++.+..++|.++..+|+.+++.|+.+... +|+
T Consensus 251 --~~~~~~~l~~~~~~--~~~~~~ivF~~t~~~~~~l~~~l~~~--~~~~~~~h~~~~~~~R~~i~~~f~~g~~~--vLv 322 (401)
T PTZ00424 251 --EEWKFDTLCDLYET--LTITQAIIYCNTRRKVDYLTKKMHER--DFTVSCMHGDMDQKDRDLIMREFRSGSTR--VLI 322 (401)
T ss_pred --HHHHHHHHHHHHHh--cCCCeEEEEecCcHHHHHHHHHHHHC--CCcEEEEeCCCCHHHHHHHHHHHHcCCCC--EEE
Confidence 00111222222222 13468999999999999999999876 78899999999999999999999876655 899
Q ss_pred ecccccccccccCCCEEEEEcCCCCHhHHHHHHHhhhccCCCCcEEEEEEeeCC
Q 042857 1147 STRSCGLGINLATADTVIIYDSDFNPHADIQAMNRAHRIGQSKRLLVYRLVVRA 1200 (1404)
Q Consensus 1147 STrAgG~GINL~~AdtVIi~DsdWNP~~d~QAigRahRiGQ~k~V~VYrLvt~~ 1200 (1404)
+|.++++|||++.+++||+||++.++..++|++||++|.|.... +|.|++..
T Consensus 323 aT~~l~~GiDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~G~--~i~l~~~~ 374 (401)
T PTZ00424 323 TTDLLARGIDVQQVSLVINYDLPASPENYIHRIGRSGRFGRKGV--AINFVTPD 374 (401)
T ss_pred EcccccCCcCcccCCEEEEECCCCCHHHEeecccccccCCCCce--EEEEEcHH
Confidence 99999999999999999999999999999999999999996544 45566654
No 45
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=99.89 E-value=3.8e-21 Score=242.25 Aligned_cols=303 Identities=21% Similarity=0.249 Sum_probs=212.2
Q ss_pred CCCHHHHHHHHHHHHhhccCCcEEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEeCCC-ChHHHHHHHHHHCCCCcE
Q 042857 755 ALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLS-TMPNWLAEFALWAPNLNV 833 (1404)
Q Consensus 755 ~L~pyQlegVnwL~~~~~~~~~~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP~S-ll~nW~rEf~kw~P~l~V 833 (1404)
.++|+|.++++-++. +.+++++..+|.|||+.+...+. . ..+.+|||+|+. ++.++.+.+... ++.+
T Consensus 13 ~fr~~Q~~~i~~il~----g~dvlv~~PTG~GKTl~y~lpal--~----~~g~~lVisPl~sL~~dq~~~l~~~--gi~~ 80 (591)
T TIGR01389 13 DFRPGQEEIISHVLD----GRDVLVVMPTGGGKSLCYQVPAL--L----LKGLTVVISPLISLMKDQVDQLRAA--GVAA 80 (591)
T ss_pred CCCHHHHHHHHHHHc----CCCEEEEcCCCccHhHHHHHHHH--H----cCCcEEEEcCCHHHHHHHHHHHHHc--CCcE
Confidence 699999999988765 78999999999999998764433 2 135689999985 557888888775 5677
Q ss_pred EEEecchhHHHHHHHhhhccCCCCccccccCCCCceEEEeeHHHHHhh--hccccCCCceEEEEccccccCCCcc-----
Q 042857 834 VEYHGCAKARAIIRQYEWHASDPDNLNKKTSSYKFNVLLTTYEMILAD--SSHLRGVPWEVLVVDEGHRLKNSGS----- 906 (1404)
Q Consensus 834 vvy~G~~~~R~~ir~~E~~~~~~~~~~~~~~~~kfdVvITTYe~l~~d--~~~L~~i~w~lVIVDEAHrlKN~~S----- 906 (1404)
..++++........... .......+++++|++.+... ...+...++.+|||||||.+-..+.
T Consensus 81 ~~~~s~~~~~~~~~~~~-----------~l~~~~~~il~~tpe~l~~~~~~~~l~~~~l~~iViDEaH~i~~~g~~frp~ 149 (591)
T TIGR01389 81 AYLNSTLSAKEQQDIEK-----------ALVNGELKLLYVAPERLEQDYFLNMLQRIPIALVAVDEAHCVSQWGHDFRPE 149 (591)
T ss_pred EEEeCCCCHHHHHHHHH-----------HHhCCCCCEEEEChhHhcChHHHHHHhcCCCCEEEEeCCcccccccCccHHH
Confidence 77777654332221111 11224678999999988642 3455667889999999999865432
Q ss_pred --HHHHHHhhcccccEEEEeccCCCCChHHHHHHhhhhCCCCCCChhHHHHHhccccchHHHHHHHHhhhhhhhhhhHhh
Q 042857 907 --KLFSLLNSFSFQHRVLLTGTPLQNNIGEMYNLLNFLQPASFPSLSSFEEKFNDLTTTQKVEELKKLVAPHMLRRLKKD 984 (1404)
Q Consensus 907 --k~~~~L~~l~~~~rLLLTGTPlqNnl~EL~sLL~fL~P~~f~s~~~F~~~f~d~~~~~~i~~L~~lL~p~mLRR~K~d 984 (1404)
.+......+.....++||||+-.....++...|.+-.+..|.. .|
T Consensus 150 y~~l~~l~~~~~~~~vi~lTAT~~~~~~~~i~~~l~~~~~~~~~~------~~--------------------------- 196 (591)
T TIGR01389 150 YQRLGSLAERFPQVPRIALTATADAETRQDIRELLRLADANEFIT------SF--------------------------- 196 (591)
T ss_pred HHHHHHHHHhCCCCCEEEEEeCCCHHHHHHHHHHcCCCCCCeEec------CC---------------------------
Confidence 2333334454555899999986655555555444332221100 00
Q ss_pred hhhcCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCcHHHHHH
Q 042857 985 AMQNIPPKTERMVPVELSSIQAEYYRAMLTKNYQILRNIGKGVAQQSMLNIVMQLRKVCNHPYLIPGTEPDSGSVEFLHE 1064 (1404)
Q Consensus 985 V~~~LPpk~e~iV~V~LS~~Qk~~Y~~il~~n~~~L~~~~kg~~~~sllnilm~LRK~cnHP~L~~~~e~~~~~~e~l~~ 1064 (1404)
..|.....++..
T Consensus 197 ---~r~nl~~~v~~~----------------------------------------------------------------- 208 (591)
T TIGR01389 197 ---DRPNLRFSVVKK----------------------------------------------------------------- 208 (591)
T ss_pred ---CCCCcEEEEEeC-----------------------------------------------------------------
Confidence 001111111100
Q ss_pred HHHhhhhHHHHHHHHHHHHHHcCCeEEEEecchhHHHHHHHHHhhhcCCceEEEEeCCCCHHHHHHHHHHHhcCCCceEE
Q 042857 1065 MRIKASAKLTLLHSMLKVLYKEGHRVLIFSQMTKLLDILEDYLNIEFGPKTYERVDGSVSVGDRQAAITRFNQDKSRFVF 1144 (1404)
Q Consensus 1065 ~~i~~SgKl~~L~kLL~kl~~~G~KVLIFSq~~~~LDiLed~L~~~f~g~~y~rLdGs~s~~eRq~~Id~Fn~~~s~~Vf 1144 (1404)
..+...|..+|.. ..+.++|||+......+.|..+|... ++.+..+||+++..+|..+++.|..+... +
T Consensus 209 -----~~~~~~l~~~l~~--~~~~~~IIf~~sr~~~e~la~~L~~~--g~~~~~~H~~l~~~~R~~i~~~F~~g~~~--v 277 (591)
T TIGR01389 209 -----NNKQKFLLDYLKK--HRGQSGIIYASSRKKVEELAERLESQ--GISALAYHAGLSNKVRAENQEDFLYDDVK--V 277 (591)
T ss_pred -----CCHHHHHHHHHHh--cCCCCEEEEECcHHHHHHHHHHHHhC--CCCEEEEECCCCHHHHHHHHHHHHcCCCc--E
Confidence 0011112222222 12678999999999999999999875 78899999999999999999999876544 8
Q ss_pred EeecccccccccccCCCEEEEEcCCCCHhHHHHHHHhhhccCCCCcEE
Q 042857 1145 LLSTRSCGLGINLATADTVIIYDSDFNPHADIQAMNRAHRIGQSKRLL 1192 (1404)
Q Consensus 1145 LLSTrAgG~GINL~~AdtVIi~DsdWNP~~d~QAigRahRiGQ~k~V~ 1192 (1404)
|++|.++|.|||++.+++||+||++.|+..+.|++||++|.|+...+.
T Consensus 278 lVaT~a~~~GID~p~v~~VI~~~~p~s~~~y~Q~~GRaGR~G~~~~~i 325 (591)
T TIGR01389 278 MVATNAFGMGIDKPNVRFVIHYDMPGNLESYYQEAGRAGRDGLPAEAI 325 (591)
T ss_pred EEEechhhccCcCCCCCEEEEcCCCCCHHHHhhhhccccCCCCCceEE
Confidence 999999999999999999999999999999999999999999766553
No 46
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=99.88 E-value=4.7e-21 Score=241.56 Aligned_cols=303 Identities=18% Similarity=0.209 Sum_probs=207.5
Q ss_pred CCCHHHHHHHHHHHHhhccCCcEEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEeCCC-ChHHHHHHHHHHCCCCcE
Q 042857 755 ALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLS-TMPNWLAEFALWAPNLNV 833 (1404)
Q Consensus 755 ~L~pyQlegVnwL~~~~~~~~~~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP~S-ll~nW~rEf~kw~P~l~V 833 (1404)
.++|+|.+++.-++. +.++++..++|.|||+.++..+... .+.+|||+|+. ++.+|.+.|... ++.+
T Consensus 25 ~~r~~Q~~ai~~il~----g~dvlv~apTGsGKTl~y~lpal~~------~g~tlVisPl~sL~~dqv~~l~~~--gi~~ 92 (607)
T PRK11057 25 QFRPGQQEIIDAVLS----GRDCLVVMPTGGGKSLCYQIPALVL------DGLTLVVSPLISLMKDQVDQLLAN--GVAA 92 (607)
T ss_pred CCCHHHHHHHHHHHc----CCCEEEEcCCCchHHHHHHHHHHHc------CCCEEEEecHHHHHHHHHHHHHHc--CCcE
Confidence 699999999987765 8899999999999998765443321 34689999985 447788887764 4566
Q ss_pred EEEecchhHHHHHHHhhhccCCCCccccccCCCCceEEEeeHHHHHhh--hccccCCCceEEEEccccccCCCcc---HH
Q 042857 834 VEYHGCAKARAIIRQYEWHASDPDNLNKKTSSYKFNVLLTTYEMILAD--SSHLRGVPWEVLVVDEGHRLKNSGS---KL 908 (1404)
Q Consensus 834 vvy~G~~~~R~~ir~~E~~~~~~~~~~~~~~~~kfdVvITTYe~l~~d--~~~L~~i~w~lVIVDEAHrlKN~~S---k~ 908 (1404)
..+.+..........+. .......+++++|++.+... ...+...++++|||||||.+-..+. ..
T Consensus 93 ~~~~s~~~~~~~~~~~~-----------~~~~g~~~il~~tPe~l~~~~~~~~l~~~~l~~iVIDEaH~i~~~G~~fr~~ 161 (607)
T PRK11057 93 ACLNSTQTREQQLEVMA-----------GCRTGQIKLLYIAPERLMMDNFLEHLAHWNPALLAVDEAHCISQWGHDFRPE 161 (607)
T ss_pred EEEcCCCCHHHHHHHHH-----------HHhCCCCcEEEEChHHhcChHHHHHHhhCCCCEEEEeCccccccccCcccHH
Confidence 66666543332222111 01124578999999988642 3345556789999999999865432 12
Q ss_pred HHHH----hhcccccEEEEeccCCCCChHHHHHHhhhhCCCCCCChhHHHHHhccccchHHHHHHHHhhhhhhhhhhHhh
Q 042857 909 FSLL----NSFSFQHRVLLTGTPLQNNIGEMYNLLNFLQPASFPSLSSFEEKFNDLTTTQKVEELKKLVAPHMLRRLKKD 984 (1404)
Q Consensus 909 ~~~L----~~l~~~~rLLLTGTPlqNnl~EL~sLL~fL~P~~f~s~~~F~~~f~d~~~~~~i~~L~~lL~p~mLRR~K~d 984 (1404)
+..+ ..+.....++||||+-.....++...+.+-+|..+.. .|
T Consensus 162 y~~L~~l~~~~p~~~~v~lTAT~~~~~~~di~~~l~l~~~~~~~~------~~--------------------------- 208 (607)
T PRK11057 162 YAALGQLRQRFPTLPFMALTATADDTTRQDIVRLLGLNDPLIQIS------SF--------------------------- 208 (607)
T ss_pred HHHHHHHHHhCCCCcEEEEecCCChhHHHHHHHHhCCCCeEEEEC------CC---------------------------
Confidence 2222 3334556789999986555455554444332211100 00
Q ss_pred hhhcCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCcHHHHHH
Q 042857 985 AMQNIPPKTERMVPVELSSIQAEYYRAMLTKNYQILRNIGKGVAQQSMLNIVMQLRKVCNHPYLIPGTEPDSGSVEFLHE 1064 (1404)
Q Consensus 985 V~~~LPpk~e~iV~V~LS~~Qk~~Y~~il~~n~~~L~~~~kg~~~~sllnilm~LRK~cnHP~L~~~~e~~~~~~e~l~~ 1064 (1404)
..|.....++. .
T Consensus 209 ---~r~nl~~~v~~-~---------------------------------------------------------------- 220 (607)
T PRK11057 209 ---DRPNIRYTLVE-K---------------------------------------------------------------- 220 (607)
T ss_pred ---CCCcceeeeee-c----------------------------------------------------------------
Confidence 00100000000 0
Q ss_pred HHHhhhhHHHHHHHHHHHHHHcCCeEEEEecchhHHHHHHHHHhhhcCCceEEEEeCCCCHHHHHHHHHHHhcCCCceEE
Q 042857 1065 MRIKASAKLTLLHSMLKVLYKEGHRVLIFSQMTKLLDILEDYLNIEFGPKTYERVDGSVSVGDRQAAITRFNQDKSRFVF 1144 (1404)
Q Consensus 1065 ~~i~~SgKl~~L~kLL~kl~~~G~KVLIFSq~~~~LDiLed~L~~~f~g~~y~rLdGs~s~~eRq~~Id~Fn~~~s~~Vf 1144 (1404)
..++..|..++.. ..|.++|||+......+.+...|... ++.+..+||+++..+|..+++.|..+... +
T Consensus 221 -----~~~~~~l~~~l~~--~~~~~~IIFc~tr~~~e~la~~L~~~--g~~v~~~Ha~l~~~~R~~i~~~F~~g~~~--V 289 (607)
T PRK11057 221 -----FKPLDQLMRYVQE--QRGKSGIIYCNSRAKVEDTAARLQSR--GISAAAYHAGLDNDVRADVQEAFQRDDLQ--I 289 (607)
T ss_pred -----cchHHHHHHHHHh--cCCCCEEEEECcHHHHHHHHHHHHhC--CCCEEEecCCCCHHHHHHHHHHHHCCCCC--E
Confidence 0001111122221 35789999999999999999999876 78899999999999999999999876555 8
Q ss_pred EeecccccccccccCCCEEEEEcCCCCHhHHHHHHHhhhccCCCCcEE
Q 042857 1145 LLSTRSCGLGINLATADTVIIYDSDFNPHADIQAMNRAHRIGQSKRLL 1192 (1404)
Q Consensus 1145 LLSTrAgG~GINL~~AdtVIi~DsdWNP~~d~QAigRahRiGQ~k~V~ 1192 (1404)
|++|.++|.|||++.++.||+||+|.++..+.|++||++|.|....+.
T Consensus 290 LVaT~a~~~GIDip~V~~VI~~d~P~s~~~y~Qr~GRaGR~G~~~~~i 337 (607)
T PRK11057 290 VVATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAM 337 (607)
T ss_pred EEEechhhccCCCCCcCEEEEeCCCCCHHHHHHHhhhccCCCCCceEE
Confidence 899999999999999999999999999999999999999999765543
No 47
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.87 E-value=6.9e-21 Score=215.84 Aligned_cols=324 Identities=23% Similarity=0.271 Sum_probs=232.3
Q ss_pred CCCHHHHHHHHHHHHhhccCCcEEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEeCCCCh-HHHHHHHHHHCC--CC
Q 042857 755 ALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLSTM-PNWLAEFALWAP--NL 831 (1404)
Q Consensus 755 ~L~pyQlegVnwL~~~~~~~~~~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP~Sll-~nW~rEf~kw~P--~l 831 (1404)
.+.+.|.+++-.++. |+.+|.+.|+|.|||...+.-|..-+.+.+..-.+||++|..-+ .|....|+.+.. ++
T Consensus 83 ~PT~IQ~~aiP~~L~----g~dvIglAeTGSGKT~afaLPIl~~LL~~p~~~~~lVLtPtRELA~QI~e~fe~Lg~~igl 158 (476)
T KOG0330|consen 83 KPTKIQSEAIPVALG----GRDVIGLAETGSGKTGAFALPILQRLLQEPKLFFALVLTPTRELAQQIAEQFEALGSGIGL 158 (476)
T ss_pred CCchhhhhhcchhhC----CCcEEEEeccCCCchhhhHHHHHHHHHcCCCCceEEEecCcHHHHHHHHHHHHHhccccCe
Confidence 467788999877765 89999999999999998777666554454444467999999877 566677888753 57
Q ss_pred cEEEEecchhHHHHHHHhhhccCCCCccccccCCCCceEEEeeHHHHHhhhcc---ccCCCceEEEEccccccCCCc--c
Q 042857 832 NVVEYHGCAKARAIIRQYEWHASDPDNLNKKTSSYKFNVLLTTYEMILADSSH---LRGVPWEVLVVDEGHRLKNSG--S 906 (1404)
Q Consensus 832 ~Vvvy~G~~~~R~~ir~~E~~~~~~~~~~~~~~~~kfdVvITTYe~l~~d~~~---L~~i~w~lVIVDEAHrlKN~~--S 906 (1404)
++.++.|+.+-..+..+. ..+.||+|.|+..+.+.... ++--...++|+|||.||-|.+ .
T Consensus 159 r~~~lvGG~~m~~q~~~L---------------~kkPhilVaTPGrL~dhl~~Tkgf~le~lk~LVlDEADrlLd~dF~~ 223 (476)
T KOG0330|consen 159 RVAVLVGGMDMMLQANQL---------------SKKPHILVATPGRLWDHLENTKGFSLEQLKFLVLDEADRLLDMDFEE 223 (476)
T ss_pred EEEEEecCchHHHHHHHh---------------hcCCCEEEeCcHHHHHHHHhccCccHHHhHHHhhchHHhhhhhhhHH
Confidence 888899988776655443 23678999999999886542 333345689999999998844 4
Q ss_pred HHHHHHhhcccccE-EEEeccCCCCChHHHHHHhhhhCCCCCCChhHHHHHhccccchHHHHHHHHhhhhhhhhhhHhhh
Q 042857 907 KLFSLLNSFSFQHR-VLLTGTPLQNNIGEMYNLLNFLQPASFPSLSSFEEKFNDLTTTQKVEELKKLVAPHMLRRLKKDA 985 (1404)
Q Consensus 907 k~~~~L~~l~~~~r-LLLTGTPlqNnl~EL~sLL~fL~P~~f~s~~~F~~~f~d~~~~~~i~~L~~lL~p~mLRR~K~dV 985 (1404)
.+...|..+...++ +|.|||- ..++ .+|... .+
T Consensus 224 ~ld~ILk~ip~erqt~LfsATM-t~kv----------------------------------~kL~ra----sl------- 257 (476)
T KOG0330|consen 224 ELDYILKVIPRERQTFLFSATM-TKKV----------------------------------RKLQRA----SL------- 257 (476)
T ss_pred HHHHHHHhcCccceEEEEEeec-chhh----------------------------------HHHHhh----cc-------
Confidence 67788888876555 6778884 1111 111100 00
Q ss_pred hhcCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCcHHHHHHH
Q 042857 986 MQNIPPKTERMVPVELSSIQAEYYRAMLTKNYQILRNIGKGVAQQSMLNIVMQLRKVCNHPYLIPGTEPDSGSVEFLHEM 1065 (1404)
Q Consensus 986 ~~~LPpk~e~iV~V~LS~~Qk~~Y~~il~~n~~~L~~~~kg~~~~sllnilm~LRK~cnHP~L~~~~e~~~~~~e~l~~~ 1065 (1404)
.-| +.|.-+. .|+ .+-.|.+ -||+-.
T Consensus 258 --~~p------~~v~~s~----ky~------------------------tv~~lkQ----~ylfv~-------------- 283 (476)
T KOG0330|consen 258 --DNP------VKVAVSS----KYQ------------------------TVDHLKQ----TYLFVP-------------- 283 (476)
T ss_pred --CCC------eEEeccc----hhc------------------------chHHhhh----heEecc--------------
Confidence 001 1111110 111 1111111 122211
Q ss_pred HHhhhhHHHHHHHHHHHHHHcCCeEEEEecchhHHHHHHHHHhhhcCCceEEEEeCCCCHHHHHHHHHHHhcCCCceEEE
Q 042857 1066 RIKASAKLTLLHSMLKVLYKEGHRVLIFSQMTKLLDILEDYLNIEFGPKTYERVDGSVSVGDRQAAITRFNQDKSRFVFL 1145 (1404)
Q Consensus 1066 ~i~~SgKl~~L~kLL~kl~~~G~KVLIFSq~~~~LDiLed~L~~~f~g~~y~rLdGs~s~~eRq~~Id~Fn~~~s~~VfL 1145 (1404)
.--|-..|..+|.++ .|.-+||||..-...+.+.-+|+.. |+....++|.|++..|..+++.|.+.... +|
T Consensus 284 ---~k~K~~yLV~ll~e~--~g~s~iVF~~t~~tt~~la~~L~~l--g~~a~~LhGqmsq~~Rlg~l~~Fk~~~r~--iL 354 (476)
T KOG0330|consen 284 ---GKDKDTYLVYLLNEL--AGNSVIVFCNTCNTTRFLALLLRNL--GFQAIPLHGQMSQSKRLGALNKFKAGARS--IL 354 (476)
T ss_pred ---ccccchhHHHHHHhh--cCCcEEEEEeccchHHHHHHHHHhc--CcceecccchhhHHHHHHHHHHHhccCCc--EE
Confidence 112334566666654 4688999999999999999999977 89999999999999999999999876655 89
Q ss_pred eecccccccccccCCCEEEEEcCCCCHhHHHHHHHhhhccCCCCcEEEEEEeeCCCHHHHHHHHH
Q 042857 1146 LSTRSCGLGINLATADTVIIYDSDFNPHADIQAMNRAHRIGQSKRLLVYRLVVRASVEERILQLA 1210 (1404)
Q Consensus 1146 LSTrAgG~GINL~~AdtVIi~DsdWNP~~d~QAigRahRiGQ~k~V~VYrLvt~~TvEE~Ilq~a 1210 (1404)
++|.++++|+|.+.+|.||+||.|-+-..|++|.||+.|.| +.-.+..||+. +|-..+++.
T Consensus 355 v~TDVaSRGLDip~Vd~VVNyDiP~~skDYIHRvGRtaRaG--rsG~~ItlVtq--yDve~~qrI 415 (476)
T KOG0330|consen 355 VCTDVASRGLDIPHVDVVVNYDIPTHSKDYIHRVGRTARAG--RSGKAITLVTQ--YDVELVQRI 415 (476)
T ss_pred EecchhcccCCCCCceEEEecCCCCcHHHHHHHcccccccC--CCcceEEEEeh--hhhHHHHHH
Confidence 99999999999999999999999999999999999999999 45567789998 444444443
No 48
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=99.87 E-value=2.5e-21 Score=223.32 Aligned_cols=338 Identities=23% Similarity=0.359 Sum_probs=235.9
Q ss_pred CCCCHHHHHHHHHHHHhhccCCcEEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEeCCCC-hHHHHHHHHHHCC--C
Q 042857 754 GALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLST-MPNWLAEFALWAP--N 830 (1404)
Q Consensus 754 ~~L~pyQlegVnwL~~~~~~~~~~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP~Sl-l~nW~rEf~kw~P--~ 830 (1404)
.++||||...++.|..+ ...+.||+.-..|.|||++.+..+... ++.+||+|..++ +.||..+|..|.. +
T Consensus 301 t~iRpYQEksL~KMFGN-gRARSGiIVLPCGAGKtLVGvTAa~ti------kK~clvLcts~VSVeQWkqQfk~wsti~d 373 (776)
T KOG1123|consen 301 TQIRPYQEKSLSKMFGN-GRARSGIIVLPCGAGKTLVGVTAACTI------KKSCLVLCTSAVSVEQWKQQFKQWSTIQD 373 (776)
T ss_pred cccCchHHHHHHHHhCC-CcccCceEEEecCCCCceeeeeeeeee------cccEEEEecCccCHHHHHHHHHhhcccCc
Confidence 47999999999887552 123678999999999999998877654 457999998775 5999999999972 3
Q ss_pred CcEEEEecchhHHHHHHHhhhccCCCCccccccCCCCceEEEeeHHHHHhh----------hccccCCCceEEEEccccc
Q 042857 831 LNVVEYHGCAKARAIIRQYEWHASDPDNLNKKTSSYKFNVLLTTYEMILAD----------SSHLRGVPWEVLVVDEGHR 900 (1404)
Q Consensus 831 l~Vvvy~G~~~~R~~ir~~E~~~~~~~~~~~~~~~~kfdVvITTYe~l~~d----------~~~L~~i~w~lVIVDEAHr 900 (1404)
-.++.|....+.+ ......|+||||.++..- ..+|....|+++|+||.|-
T Consensus 374 ~~i~rFTsd~Ke~--------------------~~~~~gvvvsTYsMva~t~kRS~eaek~m~~l~~~EWGllllDEVHv 433 (776)
T KOG1123|consen 374 DQICRFTSDAKER--------------------FPSGAGVVVTTYSMVAYTGKRSHEAEKIMDFLRGREWGLLLLDEVHV 433 (776)
T ss_pred cceEEeecccccc--------------------CCCCCcEEEEeeehhhhcccccHHHHHHHHHHhcCeeeeEEeehhcc
Confidence 3566666544322 224567999999998632 3678889999999999998
Q ss_pred cCCCccHH-HHHHhhcccccEEEEeccCCCCChHHHHHHhhhh-CCCCCCChhHHHHHhccccchHHHHHHHHhhhhhhh
Q 042857 901 LKNSGSKL-FSLLNSFSFQHRVLLTGTPLQNNIGEMYNLLNFL-QPASFPSLSSFEEKFNDLTTTQKVEELKKLVAPHML 978 (1404)
Q Consensus 901 lKN~~Sk~-~~~L~~l~~~~rLLLTGTPlqNnl~EL~sLL~fL-~P~~f~s~~~F~~~f~d~~~~~~i~~L~~lL~p~mL 978 (1404)
+ .++. .+.|..+.+..+|+||||.+... |-..=|||| .|..+. ..+-+ |.+
T Consensus 434 v---PA~MFRRVlsiv~aHcKLGLTATLvRED--dKI~DLNFLIGPKlYE------AnWmd---------L~~------- 486 (776)
T KOG1123|consen 434 V---PAKMFRRVLSIVQAHCKLGLTATLVRED--DKITDLNFLIGPKLYE------ANWMD---------LQK------- 486 (776)
T ss_pred c---hHHHHHHHHHHHHHHhhccceeEEeecc--ccccccceeecchhhh------ccHHH---------HHh-------
Confidence 8 3444 45555567888899999987653 122224554 344431 11111 100
Q ss_pred hhhHhhhhhcCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCc
Q 042857 979 RRLKKDAMQNIPPKTERMVPVELSSIQAEYYRAMLTKNYQILRNIGKGVAQQSMLNIVMQLRKVCNHPYLIPGTEPDSGS 1058 (1404)
Q Consensus 979 RR~K~dV~~~LPpk~e~iV~V~LS~~Qk~~Y~~il~~n~~~L~~~~kg~~~~sllnilm~LRK~cnHP~L~~~~e~~~~~ 1058 (1404)
...+..-.--.|.|+||+. +|+..+..+... .-++ |
T Consensus 487 -------kGhIA~VqCaEVWCpMt~e---Fy~eYL~~~t~k----------r~lL-------------y----------- 522 (776)
T KOG1123|consen 487 -------KGHIAKVQCAEVWCPMTPE---FYREYLRENTRK----------RMLL-------------Y----------- 522 (776)
T ss_pred -------CCceeEEeeeeeecCCCHH---HHHHHHhhhhhh----------hhee-------------e-----------
Confidence 0113333455689999985 455544432110 0000 0
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHcCCeEEEEecchhHHHHHHHHHhhhcCCceEEEEeCCCCHHHHHHHHHHHhcC
Q 042857 1059 VEFLHEMRIKASAKLTLLHSMLKVLYKEGHRVLIFSQMTKLLDILEDYLNIEFGPKTYERVDGSVSVGDRQAAITRFNQD 1138 (1404)
Q Consensus 1059 ~e~l~~~~i~~SgKl~~L~kLL~kl~~~G~KVLIFSq~~~~LDiLed~L~~~f~g~~y~rLdGs~s~~eRq~~Id~Fn~~ 1138 (1404)
+-...|+++..-||+..-.+|.|+|||+..+-.|....--|. -. .|.|.+++.+|.++++.|+.+
T Consensus 523 --------vMNP~KFraCqfLI~~HE~RgDKiIVFsDnvfALk~YAikl~-----Kp--fIYG~Tsq~ERm~ILqnFq~n 587 (776)
T KOG1123|consen 523 --------VMNPNKFRACQFLIKFHERRGDKIIVFSDNVFALKEYAIKLG-----KP--FIYGPTSQNERMKILQNFQTN 587 (776)
T ss_pred --------ecCcchhHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHcC-----Cc--eEECCCchhHHHHHHHhcccC
Confidence 123467777777888888899999999988766655443333 22 378999999999999999877
Q ss_pred CCceEEEeecccccccccccCCCEEEEEcCCC-CHhHHHHHHHhhhccCC----CCcEEEEEEeeCCCHHHH
Q 042857 1139 KSRFVFLLSTRSCGLGINLATADTVIIYDSDF-NPHADIQAMNRAHRIGQ----SKRLLVYRLVVRASVEER 1205 (1404)
Q Consensus 1139 ~s~~VfLLSTrAgG~GINL~~AdtVIi~DsdW-NP~~d~QAigRahRiGQ----~k~V~VYrLvt~~TvEE~ 1205 (1404)
+...-+.+| ++|...|+|+.|+.+|-..+.. +-.+..||.||+-|.-. .-.++.|-||+.+|.|-.
T Consensus 588 ~~vNTIFlS-KVgDtSiDLPEAnvLIQISSH~GSRRQEAQRLGRILRAKk~~de~fnafFYSLVS~DTqEM~ 658 (776)
T KOG1123|consen 588 PKVNTIFLS-KVGDTSIDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKRNDEEFNAFFYSLVSKDTQEMY 658 (776)
T ss_pred CccceEEEe-eccCccccCCcccEEEEEcccccchHHHHHHHHHHHHHhhcCccccceeeeeeeecchHHHH
Confidence 654334444 7999999999999999999875 66789999999999653 234789999999998743
No 49
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=99.86 E-value=8.3e-20 Score=234.00 Aligned_cols=335 Identities=18% Similarity=0.193 Sum_probs=216.6
Q ss_pred CCCHHHHHHHHHHHHhhccCCcEEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEeCCCCh-HHHHHHHHHHC-CCCc
Q 042857 755 ALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLSTM-PNWLAEFALWA-PNLN 832 (1404)
Q Consensus 755 ~L~pyQlegVnwL~~~~~~~~~~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP~Sll-~nW~rEf~kw~-P~l~ 832 (1404)
.|+|||.+++..++. |.++|+...+|.|||+.++..+...+... ....+||++|+..| .|-.++|..+. .+++
T Consensus 36 ~p~~~Q~~ai~~il~----G~nvvv~apTGSGKTla~~LPiL~~l~~~-~~~~aL~l~PtraLa~q~~~~l~~l~~~~i~ 110 (742)
T TIGR03817 36 RPWQHQARAAELAHA----GRHVVVATGTASGKSLAYQLPVLSALADD-PRATALYLAPTKALAADQLRAVRELTLRGVR 110 (742)
T ss_pred cCCHHHHHHHHHHHC----CCCEEEECCCCCcHHHHHHHHHHHHHhhC-CCcEEEEEcChHHHHHHHHHHHHHhccCCeE
Confidence 699999999987765 89999999999999998876665554332 23468999999766 66777788775 3678
Q ss_pred EEEEecchhHHHHHHHhhhccCCCCccccccCCCCceEEEeeHHHHHhhh--------ccccCCCceEEEEccccccCC-
Q 042857 833 VVEYHGCAKARAIIRQYEWHASDPDNLNKKTSSYKFNVLLTTYEMILADS--------SHLRGVPWEVLVVDEGHRLKN- 903 (1404)
Q Consensus 833 Vvvy~G~~~~R~~ir~~E~~~~~~~~~~~~~~~~kfdVvITTYe~l~~d~--------~~L~~i~w~lVIVDEAHrlKN- 903 (1404)
+.+|+|+......... ....+|+|||++++.... .+|. +..+|||||+|++.+
T Consensus 111 v~~~~Gdt~~~~r~~i----------------~~~~~IivtTPd~L~~~~L~~~~~~~~~l~--~l~~vViDEah~~~g~ 172 (742)
T TIGR03817 111 PATYDGDTPTEERRWA----------------REHARYVLTNPDMLHRGILPSHARWARFLR--RLRYVVIDECHSYRGV 172 (742)
T ss_pred EEEEeCCCCHHHHHHH----------------hcCCCEEEEChHHHHHhhccchhHHHHHHh--cCCEEEEeChhhccCc
Confidence 8899997654321110 013589999999986421 1233 347999999999975
Q ss_pred CccHHHHHHhhcc--------cccEEEEeccCCCCChHHHHHHhhhhCCCCCCChhHHHHHhccccchHHHHHHHHhhhh
Q 042857 904 SGSKLFSLLNSFS--------FQHRVLLTGTPLQNNIGEMYNLLNFLQPASFPSLSSFEEKFNDLTTTQKVEELKKLVAP 975 (1404)
Q Consensus 904 ~~Sk~~~~L~~l~--------~~~rLLLTGTPlqNnl~EL~sLL~fL~P~~f~s~~~F~~~f~d~~~~~~i~~L~~lL~p 975 (1404)
.++.+...+..+. ....+++|||. ++..++.. .+... |
T Consensus 173 fg~~~~~il~rL~ri~~~~g~~~q~i~~SATi--~n~~~~~~---~l~g~-----------------------------~ 218 (742)
T TIGR03817 173 FGSHVALVLRRLRRLCARYGASPVFVLASATT--ADPAAAAS---RLIGA-----------------------------P 218 (742)
T ss_pred cHHHHHHHHHHHHHHHHhcCCCCEEEEEecCC--CCHHHHHH---HHcCC-----------------------------C
Confidence 3344444444331 23468899995 23333221 11100 0
Q ss_pred hhhhhhHhhhhhcCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHhCCCCCCCCCCCC
Q 042857 976 HMLRRLKKDAMQNIPPKTERMVPVELSSIQAEYYRAMLTKNYQILRNIGKGVAQQSMLNIVMQLRKVCNHPYLIPGTEPD 1055 (1404)
Q Consensus 976 ~mLRR~K~dV~~~LPpk~e~iV~V~LS~~Qk~~Y~~il~~n~~~L~~~~kg~~~~sllnilm~LRK~cnHP~L~~~~e~~ 1055 (1404)
+.+ .. ....|......+...... +. . . ...+.. .|
T Consensus 219 ~~~--i~---~~~~~~~~~~~~~~~p~~-----~~-~--------~-~~~~~~----------~r--------------- 253 (742)
T TIGR03817 219 VVA--VT---EDGSPRGARTVALWEPPL-----TE-L--------T-GENGAP----------VR--------------- 253 (742)
T ss_pred eEE--EC---CCCCCcCceEEEEecCCc-----cc-c--------c-cccccc----------cc---------------
Confidence 000 00 001111111111111100 00 0 0 000000 00
Q ss_pred CCcHHHHHHHHHhhhhHHHHHHHHHHHHHHcCCeEEEEecchhHHHHHHHHHhhhcC------CceEEEEeCCCCHHHHH
Q 042857 1056 SGSVEFLHEMRIKASAKLTLLHSMLKVLYKEGHRVLIFSQMTKLLDILEDYLNIEFG------PKTYERVDGSVSVGDRQ 1129 (1404)
Q Consensus 1056 ~~~~e~l~~~~i~~SgKl~~L~kLL~kl~~~G~KVLIFSq~~~~LDiLed~L~~~f~------g~~y~rLdGs~s~~eRq 1129 (1404)
. .....+..+|.. +...+.++|||++.....+.|..+|...+. +..+..++|++++.+|.
T Consensus 254 -~---------~~~~~~~~~l~~----l~~~~~~~IVF~~sr~~ae~l~~~l~~~l~~~~~~l~~~v~~~hgg~~~~eR~ 319 (742)
T TIGR03817 254 -R---------SASAEAADLLAD----LVAEGARTLTFVRSRRGAELVAAIARRLLGEVDPDLAERVAAYRAGYLPEDRR 319 (742)
T ss_pred -c---------chHHHHHHHHHH----HHHCCCCEEEEcCCHHHHHHHHHHHHHHHHhhccccccchhheecCCCHHHHH
Confidence 0 001123333333 444688999999999999999988865321 34567889999999999
Q ss_pred HHHHHHhcCCCceEEEeecccccccccccCCCEEEEEcCCCCHhHHHHHHHhhhccCCCCcEEEEEEeeCCCHHHHHHHH
Q 042857 1130 AAITRFNQDKSRFVFLLSTRSCGLGINLATADTVIIYDSDFNPHADIQAMNRAHRIGQSKRLLVYRLVVRASVEERILQL 1209 (1404)
Q Consensus 1130 ~~Id~Fn~~~s~~VfLLSTrAgG~GINL~~AdtVIi~DsdWNP~~d~QAigRahRiGQ~k~V~VYrLvt~~TvEE~Ilq~ 1209 (1404)
+++++|.++.-. +|++|.++++|||+...|+||+||.|-++..++|++||++|.|+... ++-++..+..|..++..
T Consensus 320 ~ie~~f~~G~i~--vLVaTd~lerGIDI~~vd~VI~~~~P~s~~~y~qRiGRaGR~G~~g~--ai~v~~~~~~d~~~~~~ 395 (742)
T TIGR03817 320 ELERALRDGELL--GVATTNALELGVDISGLDAVVIAGFPGTRASLWQQAGRAGRRGQGAL--VVLVARDDPLDTYLVHH 395 (742)
T ss_pred HHHHHHHcCCce--EEEECchHhccCCcccccEEEEeCCCCCHHHHHHhccccCCCCCCcE--EEEEeCCChHHHHHHhC
Confidence 999999875554 89999999999999999999999999999999999999999997643 44455556677766553
No 50
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=99.86 E-value=3.9e-20 Score=236.46 Aligned_cols=311 Identities=18% Similarity=0.173 Sum_probs=207.5
Q ss_pred CCCCHHHHHHHHHHHHhhccCCcEEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEeCCCCh-HHHHHHHHHHCCCCc
Q 042857 754 GALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLSTM-PNWLAEFALWAPNLN 832 (1404)
Q Consensus 754 ~~L~pyQlegVnwL~~~~~~~~~~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP~Sll-~nW~rEf~kw~P~l~ 832 (1404)
..++|+|.+++..++. +.++|+...+|.|||+.....+... .+.+|||+|+.-| ..+...+.. .++.
T Consensus 459 ~sFRp~Q~eaI~aiL~----GrDVLVimPTGSGKSLcYQLPAL~~------~GiTLVISPLiSLmqDQV~~L~~--~GI~ 526 (1195)
T PLN03137 459 HSFRPNQREIINATMS----GYDVFVLMPTGGGKSLTYQLPALIC------PGITLVISPLVSLIQDQIMNLLQ--ANIP 526 (1195)
T ss_pred CCCCHHHHHHHHHHHc----CCCEEEEcCCCccHHHHHHHHHHHc------CCcEEEEeCHHHHHHHHHHHHHh--CCCe
Confidence 4799999999988765 8999999999999999875544321 3568999998654 434444443 2566
Q ss_pred EEEEecchhHHHHHHHhhhccCCCCccccccCCCCceEEEeeHHHHHhh---hcccc----CCCceEEEEccccccCCCc
Q 042857 833 VVEYHGCAKARAIIRQYEWHASDPDNLNKKTSSYKFNVLLTTYEMILAD---SSHLR----GVPWEVLVVDEGHRLKNSG 905 (1404)
Q Consensus 833 Vvvy~G~~~~R~~ir~~E~~~~~~~~~~~~~~~~kfdVvITTYe~l~~d---~~~L~----~i~w~lVIVDEAHrlKN~~ 905 (1404)
+..+.|+.........+.-. ......++||++|++.+... ...+. ...+.+|||||||.+-.++
T Consensus 527 Aa~L~s~~s~~eq~~ilr~l---------~s~~g~~~ILyvTPERL~~~d~ll~~L~~L~~~~~LslIVIDEAHcVSqWG 597 (1195)
T PLN03137 527 AASLSAGMEWAEQLEILQEL---------SSEYSKYKLLYVTPEKVAKSDSLLRHLENLNSRGLLARFVIDEAHCVSQWG 597 (1195)
T ss_pred EEEEECCCCHHHHHHHHHHH---------HhcCCCCCEEEEChHHhhcchHHHHHHHhhhhccccceeccCcchhhhhcc
Confidence 77676654433222111100 01124678999999987642 11221 2236889999999986654
Q ss_pred cH---HHH----HHhhcccccEEEEeccCCCCChHHHHHHhhhhCCCCCCChhHHHHHhccccchHHHHHHHHhhhhhhh
Q 042857 906 SK---LFS----LLNSFSFQHRVLLTGTPLQNNIGEMYNLLNFLQPASFPSLSSFEEKFNDLTTTQKVEELKKLVAPHML 978 (1404)
Q Consensus 906 Sk---~~~----~L~~l~~~~rLLLTGTPlqNnl~EL~sLL~fL~P~~f~s~~~F~~~f~d~~~~~~i~~L~~lL~p~mL 978 (1404)
.. -++ ....+.....++||||.-.....++...|.+..+..|. ..|
T Consensus 598 hDFRpdYr~L~~Lr~~fp~vPilALTATAT~~V~eDI~~~L~l~~~~vfr------~Sf--------------------- 650 (1195)
T PLN03137 598 HDFRPDYQGLGILKQKFPNIPVLALTATATASVKEDVVQALGLVNCVVFR------QSF--------------------- 650 (1195)
T ss_pred cchHHHHHHHHHHHHhCCCCCeEEEEecCCHHHHHHHHHHcCCCCcEEee------ccc---------------------
Confidence 21 122 22334455678999998666666665555433322110 000
Q ss_pred hhhHhhhhhcCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCc
Q 042857 979 RRLKKDAMQNIPPKTERMVPVELSSIQAEYYRAMLTKNYQILRNIGKGVAQQSMLNIVMQLRKVCNHPYLIPGTEPDSGS 1058 (1404)
Q Consensus 979 RR~K~dV~~~LPpk~e~iV~V~LS~~Qk~~Y~~il~~n~~~L~~~~kg~~~~sllnilm~LRK~cnHP~L~~~~e~~~~~ 1058 (1404)
.-|.....++ +-. ..
T Consensus 651 ---------~RpNL~y~Vv--~k~---kk--------------------------------------------------- 665 (1195)
T PLN03137 651 ---------NRPNLWYSVV--PKT---KK--------------------------------------------------- 665 (1195)
T ss_pred ---------CccceEEEEe--ccc---hh---------------------------------------------------
Confidence 0111111111 000 00
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHcCCeEEEEecchhHHHHHHHHHhhhcCCceEEEEeCCCCHHHHHHHHHHHhcC
Q 042857 1059 VEFLHEMRIKASAKLTLLHSMLKVLYKEGHRVLIFSQMTKLLDILEDYLNIEFGPKTYERVDGSVSVGDRQAAITRFNQD 1138 (1404)
Q Consensus 1059 ~e~l~~~~i~~SgKl~~L~kLL~kl~~~G~KVLIFSq~~~~LDiLed~L~~~f~g~~y~rLdGs~s~~eRq~~Id~Fn~~ 1138 (1404)
.+..|.+++... ..+...||||......+.|..+|... |+....+||+++..+|..++++|..+
T Consensus 666 -------------~le~L~~~I~~~-~~~esgIIYC~SRke~E~LAe~L~~~--Gika~~YHAGLs~eeR~~vqe~F~~G 729 (1195)
T PLN03137 666 -------------CLEDIDKFIKEN-HFDECGIIYCLSRMDCEKVAERLQEF--GHKAAFYHGSMDPAQRAFVQKQWSKD 729 (1195)
T ss_pred -------------HHHHHHHHHHhc-ccCCCceeEeCchhHHHHHHHHHHHC--CCCeeeeeCCCCHHHHHHHHHHHhcC
Confidence 000111111110 12457899999999999999999876 88999999999999999999999876
Q ss_pred CCceEEEeecccccccccccCCCEEEEEcCCCCHhHHHHHHHhhhccCCCCcEEEEE
Q 042857 1139 KSRFVFLLSTRSCGLGINLATADTVIIYDSDFNPHADIQAMNRAHRIGQSKRLLVYR 1195 (1404)
Q Consensus 1139 ~s~~VfLLSTrAgG~GINL~~AdtVIi~DsdWNP~~d~QAigRahRiGQ~k~V~VYr 1195 (1404)
... +|++|.|+|.|||++.+++||+||.+.++..|.|++|||+|.|+...+.+|+
T Consensus 730 ei~--VLVATdAFGMGIDkPDVR~VIHydlPkSiEsYyQriGRAGRDG~~g~cILly 784 (1195)
T PLN03137 730 EIN--IICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYY 784 (1195)
T ss_pred CCc--EEEEechhhcCCCccCCcEEEEcCCCCCHHHHHhhhcccCCCCCCceEEEEe
Confidence 655 8899999999999999999999999999999999999999999976665544
No 51
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=99.85 E-value=1.4e-19 Score=223.60 Aligned_cols=331 Identities=21% Similarity=0.309 Sum_probs=231.4
Q ss_pred CCCHHHHHHHHHHHHhhccCCcEEEEcCCCchHHHHHHHHHHHHHhh-ccCCC-cEEEEeCCCCh-HHHHHHHHHHCC--
Q 042857 755 ALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCE-FKAKL-PCLVLVPLSTM-PNWLAEFALWAP-- 829 (1404)
Q Consensus 755 ~L~pyQlegVnwL~~~~~~~~~~ILADEMGLGKTiqaIa~L~~L~~~-~~~~g-P~LIVvP~Sll-~nW~rEf~kw~P-- 829 (1404)
.+.|.|..++-.++. +++.|....+|.|||+..+.-+...+.. ..... ++||++|+..| .|-.+++..+..
T Consensus 51 ~pt~IQ~~~IP~~l~----g~Dvi~~A~TGsGKT~Af~lP~l~~l~~~~~~~~~~aLil~PTRELA~Qi~~~~~~~~~~~ 126 (513)
T COG0513 51 EPTPIQLAAIPLILA----GRDVLGQAQTGTGKTAAFLLPLLQKILKSVERKYVSALILAPTRELAVQIAEELRKLGKNL 126 (513)
T ss_pred CCCHHHHHHHHHHhC----CCCEEEECCCCChHHHHHHHHHHHHHhcccccCCCceEEECCCHHHHHHHHHHHHHHHhhc
Confidence 578999999987766 7999999999999998877666665542 22222 39999999876 678888887753
Q ss_pred -CCcEEEEecchhHHHHHHHhhhccCCCCccccccCCCCceEEEeeHHHHHhhh--ccccCCCceEEEEccccccCCCc-
Q 042857 830 -NLNVVEYHGCAKARAIIRQYEWHASDPDNLNKKTSSYKFNVLLTTYEMILADS--SHLRGVPWEVLVVDEGHRLKNSG- 905 (1404)
Q Consensus 830 -~l~Vvvy~G~~~~R~~ir~~E~~~~~~~~~~~~~~~~kfdVvITTYe~l~~d~--~~L~~i~w~lVIVDEAHrlKN~~- 905 (1404)
.+++++++|+......+.... . ..||||.|+..+.... ..|......++|+|||.+|-+.+
T Consensus 127 ~~~~~~~i~GG~~~~~q~~~l~--------------~-~~~ivVaTPGRllD~i~~~~l~l~~v~~lVlDEADrmLd~Gf 191 (513)
T COG0513 127 GGLRVAVVYGGVSIRKQIEALK--------------R-GVDIVVATPGRLLDLIKRGKLDLSGVETLVLDEADRMLDMGF 191 (513)
T ss_pred CCccEEEEECCCCHHHHHHHHh--------------c-CCCEEEECccHHHHHHHcCCcchhhcCEEEeccHhhhhcCCC
Confidence 678888888876665554432 1 4799999999988643 23445567799999999998754
Q ss_pred -cHHHHHHhhccc-ccEEEEeccCCCCChHHHHHHhhhhCCCCCCChhHHHHHhccccchHHHHHHHHhhhhhhhhhhHh
Q 042857 906 -SKLFSLLNSFSF-QHRVLLTGTPLQNNIGEMYNLLNFLQPASFPSLSSFEEKFNDLTTTQKVEELKKLVAPHMLRRLKK 983 (1404)
Q Consensus 906 -Sk~~~~L~~l~~-~~rLLLTGTPlqNnl~EL~sLL~fL~P~~f~s~~~F~~~f~d~~~~~~i~~L~~lL~p~mLRR~K~ 983 (1404)
..+...+..+.. ...++.|||.-. .+.+|. ..|.. .|..+..-..
T Consensus 192 ~~~i~~I~~~~p~~~qtllfSAT~~~-~i~~l~------------------~~~l~--------------~p~~i~v~~~ 238 (513)
T COG0513 192 IDDIEKILKALPPDRQTLLFSATMPD-DIRELA------------------RRYLN--------------DPVEIEVSVE 238 (513)
T ss_pred HHHHHHHHHhCCcccEEEEEecCCCH-HHHHHH------------------HHHcc--------------CCcEEEEccc
Confidence 345666666665 455789999522 111110 00000 0110000000
Q ss_pred hhhhcCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCcHHHHH
Q 042857 984 DAMQNIPPKTERMVPVELSSIQAEYYRAMLTKNYQILRNIGKGVAQQSMLNIVMQLRKVCNHPYLIPGTEPDSGSVEFLH 1063 (1404)
Q Consensus 984 dV~~~LPpk~e~iV~V~LS~~Qk~~Y~~il~~n~~~L~~~~kg~~~~sllnilm~LRK~cnHP~L~~~~e~~~~~~e~l~ 1063 (1404)
......+......+.|.-
T Consensus 239 ~~~~~~~~i~q~~~~v~~-------------------------------------------------------------- 256 (513)
T COG0513 239 KLERTLKKIKQFYLEVES-------------------------------------------------------------- 256 (513)
T ss_pred cccccccCceEEEEEeCC--------------------------------------------------------------
Confidence 000000111111111110
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHcCCeEEEEecchhHHHHHHHHHhhhcCCceEEEEeCCCCHHHHHHHHHHHhcCCCceE
Q 042857 1064 EMRIKASAKLTLLHSMLKVLYKEGHRVLIFSQMTKLLDILEDYLNIEFGPKTYERVDGSVSVGDRQAAITRFNQDKSRFV 1143 (1404)
Q Consensus 1064 ~~~i~~SgKl~~L~kLL~kl~~~G~KVLIFSq~~~~LDiLed~L~~~f~g~~y~rLdGs~s~~eRq~~Id~Fn~~~s~~V 1143 (1404)
...|+.+|..++.... ..++|||+......+.|...|... |+.+..|||++++.+|..++..|+++...
T Consensus 257 -----~~~k~~~L~~ll~~~~--~~~~IVF~~tk~~~~~l~~~l~~~--g~~~~~lhG~l~q~~R~~~l~~F~~g~~~-- 325 (513)
T COG0513 257 -----EEEKLELLLKLLKDED--EGRVIVFVRTKRLVEELAESLRKR--GFKVAALHGDLPQEERDRALEKFKDGELR-- 325 (513)
T ss_pred -----HHHHHHHHHHHHhcCC--CCeEEEEeCcHHHHHHHHHHHHHC--CCeEEEecCCCCHHHHHHHHHHHHcCCCC--
Confidence 0146677777766532 237999999999999999999976 79999999999999999999999965555
Q ss_pred EEeecccccccccccCCCEEEEEcCCCCHhHHHHHHHhhhccCCCCcEEEEEEeeCCCHHHHHHHHHHHH
Q 042857 1144 FLLSTRSCGLGINLATADTVIIYDSDFNPHADIQAMNRAHRIGQSKRLLVYRLVVRASVEERILQLAKKK 1213 (1404)
Q Consensus 1144 fLLSTrAgG~GINL~~AdtVIi~DsdWNP~~d~QAigRahRiGQ~k~V~VYrLvt~~TvEE~Ilq~a~~K 1213 (1404)
+|++|.++++||++...++||+||.+.++..|+||+||++|.|.+. ..+.|++. .-|...+..+++.
T Consensus 326 vLVaTDvaaRGiDi~~v~~VinyD~p~~~e~yvHRiGRTgRaG~~G--~ai~fv~~-~~e~~~l~~ie~~ 392 (513)
T COG0513 326 VLVATDVAARGLDIPDVSHVINYDLPLDPEDYVHRIGRTGRAGRKG--VAISFVTE-EEEVKKLKRIEKR 392 (513)
T ss_pred EEEEechhhccCCccccceeEEccCCCCHHHheeccCccccCCCCC--eEEEEeCc-HHHHHHHHHHHHH
Confidence 8999999999999999999999999999999999999999999654 45667766 3355666555555
No 52
>PRK13767 ATP-dependent helicase; Provisional
Probab=99.85 E-value=1.2e-19 Score=236.59 Aligned_cols=326 Identities=21% Similarity=0.223 Sum_probs=204.4
Q ss_pred CCCCHHHHHHHHHHHHhhccCCcEEEEcCCCchHHHHHHHHHHHHHhhc------cCCCcEEEEeCCCCh-HHHHHH---
Q 042857 754 GALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEF------KAKLPCLVLVPLSTM-PNWLAE--- 823 (1404)
Q Consensus 754 ~~L~pyQlegVnwL~~~~~~~~~~ILADEMGLGKTiqaIa~L~~L~~~~------~~~gP~LIVvP~Sll-~nW~rE--- 823 (1404)
..|+|+|.+++..+.. +.++|+..++|.|||+.++..+...+... .....+|+|+|+..| .++.+.
T Consensus 31 ~~~tpiQ~~Ai~~il~----g~nvli~APTGSGKTlaa~Lpil~~l~~~~~~~~~~~~~~~LyIsPtraLa~di~~~L~~ 106 (876)
T PRK13767 31 GTFTPPQRYAIPLIHE----GKNVLISSPTGSGKTLAAFLAIIDELFRLGREGELEDKVYCLYVSPLRALNNDIHRNLEE 106 (876)
T ss_pred CCCCHHHHHHHHHHHc----CCCEEEECCCCCcHHHHHHHHHHHHHHhhccccCCCCCeEEEEEcCHHHHHHHHHHHHHH
Confidence 3599999999987644 88999999999999998776554433221 112348999998755 555543
Q ss_pred ----HHHHC-------CCCcEEEEecchhHHHHHHHhhhccCCCCccccccCCCCceEEEeeHHHHHhhh------cccc
Q 042857 824 ----FALWA-------PNLNVVEYHGCAKARAIIRQYEWHASDPDNLNKKTSSYKFNVLLTTYEMILADS------SHLR 886 (1404)
Q Consensus 824 ----f~kw~-------P~l~Vvvy~G~~~~R~~ir~~E~~~~~~~~~~~~~~~~kfdVvITTYe~l~~d~------~~L~ 886 (1404)
+..|+ |++++.+++|+.......+.. ....+|+|||++.+.... ..|.
T Consensus 107 ~l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~l---------------~~~p~IlVtTPE~L~~ll~~~~~~~~l~ 171 (876)
T PRK13767 107 PLTEIREIAKERGEELPEIRVAIRTGDTSSYEKQKML---------------KKPPHILITTPESLAILLNSPKFREKLR 171 (876)
T ss_pred HHHHHHHHHHhcCCCcCCeeEEEEcCCCCHHHHHHHH---------------hCCCCEEEecHHHHHHHhcChhHHHHHh
Confidence 33343 467889999976544332221 124689999999885321 1222
Q ss_pred CCCceEEEEccccccCCCc--cHHHHHHh---hcc--cccEEEEeccCCCCChHHHHHHhhhhCCCCCCChhHHHHHhcc
Q 042857 887 GVPWEVLVVDEGHRLKNSG--SKLFSLLN---SFS--FQHRVLLTGTPLQNNIGEMYNLLNFLQPASFPSLSSFEEKFND 959 (1404)
Q Consensus 887 ~i~w~lVIVDEAHrlKN~~--Sk~~~~L~---~l~--~~~rLLLTGTPlqNnl~EL~sLL~fL~P~~f~s~~~F~~~f~d 959 (1404)
+..+|||||+|.+.+.. ..+...+. .+. ...+++||||. .++.++. .||...... ..
T Consensus 172 --~l~~VVIDE~H~l~~~~RG~~l~~~L~rL~~l~~~~~q~IglSATl--~~~~~va---~~L~~~~~~---------~~ 235 (876)
T PRK13767 172 --TVKWVIVDEIHSLAENKRGVHLSLSLERLEELAGGEFVRIGLSATI--EPLEEVA---KFLVGYEDD---------GE 235 (876)
T ss_pred --cCCEEEEechhhhccCccHHHHHHHHHHHHHhcCCCCeEEEEeccc--CCHHHHH---HHhcCcccc---------CC
Confidence 35689999999997532 22222332 222 34679999996 2344332 222211000 00
Q ss_pred ccchHHHHHHHHhhhhhhhhhhHhhhhhcCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHH
Q 042857 960 LTTTQKVEELKKLVAPHMLRRLKKDAMQNIPPKTERMVPVELSSIQAEYYRAMLTKNYQILRNIGKGVAQQSMLNIVMQL 1039 (1404)
Q Consensus 960 ~~~~~~i~~L~~lL~p~mLRR~K~dV~~~LPpk~e~iV~V~LS~~Qk~~Y~~il~~n~~~L~~~~kg~~~~sllnilm~L 1039 (1404)
. .+..+ +...........+.++...
T Consensus 236 ~-------------r~~~i------v~~~~~k~~~i~v~~p~~~------------------------------------ 260 (876)
T PRK13767 236 P-------------RDCEI------VDARFVKPFDIKVISPVDD------------------------------------ 260 (876)
T ss_pred C-------------CceEE------EccCCCccceEEEeccCcc------------------------------------
Confidence 0 00000 0000000000011111000
Q ss_pred HHHhCCCCCCCCCCCCCCcHHHHHHHHHhhhhHHHHHHHHHHHHHHcCCeEEEEecchhHHHHHHHHHhhhcC----Cce
Q 042857 1040 RKVCNHPYLIPGTEPDSGSVEFLHEMRIKASAKLTLLHSMLKVLYKEGHRVLIFSQMTKLLDILEDYLNIEFG----PKT 1115 (1404)
Q Consensus 1040 RK~cnHP~L~~~~e~~~~~~e~l~~~~i~~SgKl~~L~kLL~kl~~~G~KVLIFSq~~~~LDiLed~L~~~f~----g~~ 1115 (1404)
+.... . . .....+...|..+...++++|||++.....+.+...|...++ +..
T Consensus 261 --------l~~~~-~-----~----------~~~~~l~~~L~~~i~~~~~~LVF~nTr~~ae~la~~L~~~~~~~~~~~~ 316 (876)
T PRK13767 261 --------LIHTP-A-----E----------EISEALYETLHELIKEHRTTLIFTNTRSGAERVLYNLRKRFPEEYDEDN 316 (876)
T ss_pred --------ccccc-c-----c----------hhHHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHHHhchhhccccc
Confidence 00000 0 0 000112233444556688999999999999999988876432 356
Q ss_pred EEEEeCCCCHHHHHHHHHHHhcCCCceEEEeecccccccccccCCCEEEEEcCCCCHhHHHHHHHhhhcc-CCCCcEEEE
Q 042857 1116 YERVDGSVSVGDRQAAITRFNQDKSRFVFLLSTRSCGLGINLATADTVIIYDSDFNPHADIQAMNRAHRI-GQSKRLLVY 1194 (1404)
Q Consensus 1116 y~rLdGs~s~~eRq~~Id~Fn~~~s~~VfLLSTrAgG~GINL~~AdtVIi~DsdWNP~~d~QAigRahRi-GQ~k~V~VY 1194 (1404)
+..+||+++..+|..+++.|.++... +|++|.++++|||+...|.||+|+++.++..++|++||++|. |+...-.|+
T Consensus 317 i~~hHg~ls~~~R~~ve~~fk~G~i~--vLVaTs~Le~GIDip~Vd~VI~~~~P~sv~~ylQRiGRaGR~~g~~~~g~ii 394 (876)
T PRK13767 317 IGAHHSSLSREVRLEVEEKLKRGELK--VVVSSTSLELGIDIGYIDLVVLLGSPKSVSRLLQRIGRAGHRLGEVSKGRII 394 (876)
T ss_pred eeeeeCCCCHHHHHHHHHHHHcCCCe--EEEECChHHhcCCCCCCcEEEEeCCCCCHHHHHHhcccCCCCCCCCCcEEEE
Confidence 88899999999999999999876554 889999999999999999999999999999999999999986 444444444
Q ss_pred E
Q 042857 1195 R 1195 (1404)
Q Consensus 1195 r 1195 (1404)
-
T Consensus 395 ~ 395 (876)
T PRK13767 395 V 395 (876)
T ss_pred E
Confidence 3
No 53
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=99.84 E-value=6.1e-19 Score=224.43 Aligned_cols=362 Identities=18% Similarity=0.254 Sum_probs=265.8
Q ss_pred CCCHHHHHHHHHHHHhhccC--CcEEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEeCCCCh-HHHHHHHHHHCCCC
Q 042857 755 ALFPHQLEALNWLRKCWHKS--KNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLSTM-PNWLAEFALWAPNL 831 (1404)
Q Consensus 755 ~L~pyQlegVnwL~~~~~~~--~~~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP~Sll-~nW~rEf~kw~P~l 831 (1404)
.-.|-|+.+++.+..-+.++ ..-+|+.++|.|||-+|+-++.-....+ +-+.|+||+.+| .|..+.|..-+-++
T Consensus 594 eET~DQl~AI~eVk~DM~~~kpMDRLiCGDVGFGKTEVAmRAAFkAV~~G---KQVAvLVPTTlLA~QHy~tFkeRF~~f 670 (1139)
T COG1197 594 EETPDQLKAIEEVKRDMESGKPMDRLICGDVGFGKTEVAMRAAFKAVMDG---KQVAVLVPTTLLAQQHYETFKERFAGF 670 (1139)
T ss_pred cCCHHHHHHHHHHHHHhccCCcchheeecCcCCcHHHHHHHHHHHHhcCC---CeEEEEcccHHhHHHHHHHHHHHhcCC
Confidence 56788999999999988776 4679999999999999885544333222 458999999988 67777787666566
Q ss_pred cEEE-----EecchhHHHHHHHhhhccCCCCccccccCCCCceEEEeeHHHHHhhhccccCCCceEEEEccccccCCCcc
Q 042857 832 NVVE-----YHGCAKARAIIRQYEWHASDPDNLNKKTSSYKFNVLLTTYEMILADSSHLRGVPWEVLVVDEGHRLKNSGS 906 (1404)
Q Consensus 832 ~Vvv-----y~G~~~~R~~ir~~E~~~~~~~~~~~~~~~~kfdVvITTYe~l~~d~~~L~~i~w~lVIVDEAHrlKN~~S 906 (1404)
.|-+ |.+.+..+.++.. ...++.||||.|+..+.++..+ .+.++|||||=||+ +-
T Consensus 671 PV~I~~LSRF~s~kE~~~il~~--------------la~G~vDIvIGTHrLL~kdv~F---kdLGLlIIDEEqRF---GV 730 (1139)
T COG1197 671 PVRIEVLSRFRSAKEQKEILKG--------------LAEGKVDIVIGTHRLLSKDVKF---KDLGLLIIDEEQRF---GV 730 (1139)
T ss_pred CeeEEEecccCCHHHHHHHHHH--------------HhcCCccEEEechHhhCCCcEE---ecCCeEEEechhhc---Cc
Confidence 5543 3344444444443 3457899999999999988766 46789999999999 45
Q ss_pred HHHHHHhhcccc-cEEEEeccCCCCChHHHHHHhhhhCCCCCCChhHHHHHhccccchHHHHHHHHhhhhhhhhhhHhhh
Q 042857 907 KLFSLLNSFSFQ-HRVLLTGTPLQNNIGEMYNLLNFLQPASFPSLSSFEEKFNDLTTTQKVEELKKLVAPHMLRRLKKDA 985 (1404)
Q Consensus 907 k~~~~L~~l~~~-~rLLLTGTPlqNnl~EL~sLL~fL~P~~f~s~~~F~~~f~d~~~~~~i~~L~~lL~p~mLRR~K~dV 985 (1404)
+.-..|+.+++. +.|-||||||..+|.= +|.. .+.--
T Consensus 731 k~KEkLK~Lr~~VDvLTLSATPIPRTL~M--sm~G----------------------------------------iRdlS 768 (1139)
T COG1197 731 KHKEKLKELRANVDVLTLSATPIPRTLNM--SLSG----------------------------------------IRDLS 768 (1139)
T ss_pred cHHHHHHHHhccCcEEEeeCCCCcchHHH--HHhc----------------------------------------chhhh
Confidence 667888888766 5667999999988651 1100 00111
Q ss_pred hhcCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCcHHHHHHH
Q 042857 986 MQNIPPKTERMVPVELSSIQAEYYRAMLTKNYQILRNIGKGVAQQSMLNIVMQLRKVCNHPYLIPGTEPDSGSVEFLHEM 1065 (1404)
Q Consensus 986 ~~~LPpk~e~iV~V~LS~~Qk~~Y~~il~~n~~~L~~~~kg~~~~sllnilm~LRK~cnHP~L~~~~e~~~~~~e~l~~~ 1065 (1404)
...-||.....|..-..+..-...+.
T Consensus 769 vI~TPP~~R~pV~T~V~~~d~~~ire------------------------------------------------------ 794 (1139)
T COG1197 769 VIATPPEDRLPVKTFVSEYDDLLIRE------------------------------------------------------ 794 (1139)
T ss_pred hccCCCCCCcceEEEEecCChHHHHH------------------------------------------------------
Confidence 22355555555443333211111111
Q ss_pred HHhhhhHHHHHHHHHHHHHHcCCeEEEEecchhHHHHHHHHHhhhcCCceEEEEeCCCCHHHHHHHHHHHhcCCCceEEE
Q 042857 1066 RIKASAKLTLLHSMLKVLYKEGHRVLIFSQMTKLLDILEDYLNIEFGPKTYERVDGSVSVGDRQAAITRFNQDKSRFVFL 1145 (1404)
Q Consensus 1066 ~i~~SgKl~~L~kLL~kl~~~G~KVLIFSq~~~~LDiLed~L~~~f~g~~y~rLdGs~s~~eRq~~Id~Fn~~~s~~VfL 1145 (1404)
.+++++ .+|-+|....+.+..+.-+...|+...|..++...||.|+..+-+++|..|.++.-. +|
T Consensus 795 ------------AI~REl-~RgGQvfYv~NrV~~Ie~~~~~L~~LVPEarI~vaHGQM~e~eLE~vM~~F~~g~~d--VL 859 (1139)
T COG1197 795 ------------AILREL-LRGGQVFYVHNRVESIEKKAERLRELVPEARIAVAHGQMRERELEEVMLDFYNGEYD--VL 859 (1139)
T ss_pred ------------HHHHHH-hcCCEEEEEecchhhHHHHHHHHHHhCCceEEEEeecCCCHHHHHHHHHHHHcCCCC--EE
Confidence 122233 456678888888999999999999989999999999999999999999999876555 89
Q ss_pred eecccccccccccCCCEEEEEcCC-CCHhHHHHHHHhhhccCCCCcEEEEEEeeCCCHHHHHHHHHHHHHhhhHHHhc-C
Q 042857 1146 LSTRSCGLGINLATADTVIIYDSD-FNPHADIQAMNRAHRIGQSKRLLVYRLVVRASVEERILQLAKKKLMLDQLFVN-K 1223 (1404)
Q Consensus 1146 LSTrAgG~GINL~~AdtVIi~Dsd-WNP~~d~QAigRahRiGQ~k~V~VYrLvt~~TvEE~Ilq~a~~Kl~L~~~vv~-~ 1223 (1404)
+||.....|||+++|||+||-+.| +--++..|-.||++|-.+ .-+.|.|+.. ...|.+.+.+++....-+.+ +
T Consensus 860 v~TTIIEtGIDIPnANTiIIe~AD~fGLsQLyQLRGRVGRS~~--~AYAYfl~p~---~k~lT~~A~kRL~aI~~~~~LG 934 (1139)
T COG1197 860 VCTTIIETGIDIPNANTIIIERADKFGLAQLYQLRGRVGRSNK--QAYAYFLYPP---QKALTEDAEKRLEAIASFTELG 934 (1139)
T ss_pred EEeeeeecCcCCCCCceEEEeccccccHHHHHHhccccCCccc--eEEEEEeecC---ccccCHHHHHHHHHHHhhhhcC
Confidence 999999999999999999999997 899999999999999653 5677877776 34567777777765555443 4
Q ss_pred CCChHHHHHHHHhhHHHHhcCCCCCCCCCCCC
Q 042857 1224 SGSQKEVEDILRWGTEELFNDSPGINGKDMGE 1255 (1404)
Q Consensus 1224 ~~s~~eledilk~Ga~~Lf~~~~~~~~~d~~~ 1255 (1404)
+|.+-.+.||-=.|+.+|+..++..+-+..+.
T Consensus 935 aGf~lA~~DLeIRGaGNlLG~eQSG~I~~VGf 966 (1139)
T COG1197 935 AGFKLAMHDLEIRGAGNLLGEEQSGHIESVGF 966 (1139)
T ss_pred chHHHHhcchhccccccccCccccCchheecH
Confidence 56666777888889999999887766555554
No 54
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.83 E-value=1.9e-18 Score=227.61 Aligned_cols=358 Identities=18% Similarity=0.185 Sum_probs=207.0
Q ss_pred CCCCHHHHHHHHHHHHhhccC-CcEEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEeCCC-ChHHHHHHHHHHCCCC
Q 042857 754 GALFPHQLEALNWLRKCWHKS-KNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLS-TMPNWLAEFALWAPNL 831 (1404)
Q Consensus 754 ~~L~pyQlegVnwL~~~~~~~-~~~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP~S-ll~nW~rEf~kw~P~l 831 (1404)
..|||||.++++.+...+.++ ++++|...+|+|||+++++++..++.... .+++||+||.. ++.||..+|..+.+..
T Consensus 412 ~~lR~YQ~~AI~ai~~a~~~g~r~~Ll~maTGSGKT~tai~li~~L~~~~~-~~rVLfLvDR~~L~~Qa~~~F~~~~~~~ 490 (1123)
T PRK11448 412 LGLRYYQEDAIQAVEKAIVEGQREILLAMATGTGKTRTAIALMYRLLKAKR-FRRILFLVDRSALGEQAEDAFKDTKIEG 490 (1123)
T ss_pred CCCCHHHHHHHHHHHHHHHhccCCeEEEeCCCCCHHHHHHHHHHHHHhcCc-cCeEEEEecHHHHHHHHHHHHHhccccc
Confidence 469999999999888776544 67899999999999999999888765433 35899999975 5699999999874321
Q ss_pred c--EEEEecchhHHHHHHHhhhccCCCCccccccCCCCceEEEeeHHHHHhhhc-------cccCCCceEEEEccccccC
Q 042857 832 N--VVEYHGCAKARAIIRQYEWHASDPDNLNKKTSSYKFNVLLTTYEMILADSS-------HLRGVPWEVLVVDEGHRLK 902 (1404)
Q Consensus 832 ~--Vvvy~G~~~~R~~ir~~E~~~~~~~~~~~~~~~~kfdVvITTYe~l~~d~~-------~L~~i~w~lVIVDEAHrlK 902 (1404)
. +...++....+ . ........|+|+|+..+..... .+..-.|++||||||||..
T Consensus 491 ~~~~~~i~~i~~L~----~-------------~~~~~~~~I~iaTiQtl~~~~~~~~~~~~~~~~~~fdlIIiDEaHRs~ 553 (1123)
T PRK11448 491 DQTFASIYDIKGLE----D-------------KFPEDETKVHVATVQGMVKRILYSDDPMDKPPVDQYDCIIVDEAHRGY 553 (1123)
T ss_pred ccchhhhhchhhhh----h-------------hcccCCCCEEEEEHHHHHHhhhccccccccCCCCcccEEEEECCCCCC
Confidence 1 11111111000 0 0012245799999999865421 1233468999999999963
Q ss_pred CC-----------------ccHHHHHHhhcccccEEEEeccCCCCChHHHHHHhhhhCCCCCCChhHHHHHhccccchHH
Q 042857 903 NS-----------------GSKLFSLLNSFSFQHRVLLTGTPLQNNIGEMYNLLNFLQPASFPSLSSFEEKFNDLTTTQK 965 (1404)
Q Consensus 903 N~-----------------~Sk~~~~L~~l~~~~rLLLTGTPlqNnl~EL~sLL~fL~P~~f~s~~~F~~~f~d~~~~~~ 965 (1404)
.. .++..+.|..+. ..+|+|||||..++ .++|. .| . ..+.
T Consensus 554 ~~d~~~~~~~~~~~~~~~~~~~yr~iL~yFd-A~~IGLTATP~r~t-~~~FG-----~p-v-----------~~Ys---- 610 (1123)
T PRK11448 554 TLDKEMSEGELQFRDQLDYVSKYRRVLDYFD-AVKIGLTATPALHT-TEIFG-----EP-V-----------YTYS---- 610 (1123)
T ss_pred ccccccccchhccchhhhHHHHHHHHHhhcC-ccEEEEecCCccch-hHHhC-----Ce-e-----------EEee----
Confidence 11 123334444443 58899999997543 11111 00 0 0000
Q ss_pred HHHHHHhhh-hhhhhhhHhhhhhcCCCceEEEEE----ecCC-HHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHH
Q 042857 966 VEELKKLVA-PHMLRRLKKDAMQNIPPKTERMVP----VELS-SIQAEYYRAMLTKNYQILRNIGKGVAQQSMLNIVMQL 1039 (1404)
Q Consensus 966 i~~L~~lL~-p~mLRR~K~dV~~~LPpk~e~iV~----V~LS-~~Qk~~Y~~il~~n~~~L~~~~kg~~~~sllnilm~L 1039 (1404)
+.+.+. .+++. ..||....... +... ..+...|...... +.. . ... ..+.-.
T Consensus 611 ---l~eAI~DG~Lv~--------~~~p~~i~t~~~~~gi~~~~~e~~~~~~~~~~~----i~~-~-~l~-d~~~~~---- 668 (1123)
T PRK11448 611 ---YREAVIDGYLID--------HEPPIRIETRLSQEGIHFEKGEEVEVINTQTGE----IDL-A-TLE-DEVDFE---- 668 (1123)
T ss_pred ---HHHHHhcCCccc--------CcCCEEEEEEeccccccccccchhhhcchhhhh----hhh-c-cCc-HHHhhh----
Confidence 001110 11100 01232222110 0011 0111112111100 000 0 000 000000
Q ss_pred HHHhCCCCCCCCCCCCCCcHHHHHHHHHhhhhHHHHH-HHHHHHHHH-cCCeEEEEecchhHHHHHHHHHhhhc----CC
Q 042857 1040 RKVCNHPYLIPGTEPDSGSVEFLHEMRIKASAKLTLL-HSMLKVLYK-EGHRVLIFSQMTKLLDILEDYLNIEF----GP 1113 (1404)
Q Consensus 1040 RK~cnHP~L~~~~e~~~~~~e~l~~~~i~~SgKl~~L-~kLL~kl~~-~G~KVLIFSq~~~~LDiLed~L~~~f----~g 1113 (1404)
...+....+ .......+ ..++..+.. .+.|+||||......+.+.+.|...| ++
T Consensus 669 -------------------~~~~~~~vi-~~~~~~~i~~~l~~~l~~~~~~KtiIF~~s~~HA~~i~~~L~~~f~~~~~~ 728 (1123)
T PRK11448 669 -------------------VEDFNRRVI-TESFNRVVCEELAKYLDPTGEGKTLIFAATDAHADMVVRLLKEAFKKKYGQ 728 (1123)
T ss_pred -------------------HHHHHHHHh-hHHHHHHHHHHHHHHHhccCCCcEEEEEcCHHHHHHHHHHHHHHHHhhcCC
Confidence 000000001 01111122 223332222 24699999999988888777776543 22
Q ss_pred c---eEEEEeCCCCHHHHHHHHHHHhcCCCceEEEeecccccccccccCCCEEEEEcCCCCHhHHHHHHHhhhccCC---
Q 042857 1114 K---TYERVDGSVSVGDRQAAITRFNQDKSRFVFLLSTRSCGLGINLATADTVIIYDSDFNPHADIQAMNRAHRIGQ--- 1187 (1404)
Q Consensus 1114 ~---~y~rLdGs~s~~eRq~~Id~Fn~~~s~~VfLLSTrAgG~GINL~~AdtVIi~DsdWNP~~d~QAigRahRiGQ--- 1187 (1404)
+ .+..++|+++ +++++|++|.++.. ..+|+++...++|+|.+.++.||++++.-++..+.|++||+.|.--
T Consensus 729 ~~~~~v~~itg~~~--~~~~li~~Fk~~~~-p~IlVsvdmL~TG~DvP~v~~vVf~rpvkS~~lf~QmIGRgtR~~~~~~ 805 (1123)
T PRK11448 729 VEDDAVIKITGSID--KPDQLIRRFKNERL-PNIVVTVDLLTTGIDVPSICNLVFLRRVRSRILYEQMLGRATRLCPEIG 805 (1123)
T ss_pred cCccceEEEeCCcc--chHHHHHHHhCCCC-CeEEEEecccccCCCcccccEEEEecCCCCHHHHHHHHhhhccCCccCC
Confidence 2 4457999886 57889999986443 3688999999999999999999999999999999999999999854
Q ss_pred CCcEEEEEEe
Q 042857 1188 SKRLLVYRLV 1197 (1404)
Q Consensus 1188 ~k~V~VYrLv 1197 (1404)
+....||.++
T Consensus 806 K~~f~I~D~v 815 (1123)
T PRK11448 806 KTHFRIFDAV 815 (1123)
T ss_pred CceEEEEehH
Confidence 5556777754
No 55
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.80 E-value=8.6e-18 Score=194.58 Aligned_cols=316 Identities=21% Similarity=0.284 Sum_probs=226.0
Q ss_pred CCCHHHHHHHHHHHHhhccCCcEEEEcCCCchHHHHHHHHHHHHHhhccCC-C----cEEEEeCCCChHH----HHHHHH
Q 042857 755 ALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKAK-L----PCLVLVPLSTMPN----WLAEFA 825 (1404)
Q Consensus 755 ~L~pyQlegVnwL~~~~~~~~~~ILADEMGLGKTiqaIa~L~~L~~~~~~~-g----P~LIVvP~Sll~n----W~rEf~ 825 (1404)
.+.|.|..++-.++. +..+.+-..+|.|||+..+.-+...+...... . -.|||.|+.-|.- -...|.
T Consensus 28 ~mTpVQa~tIPlll~----~KDVvveavTGSGKTlAFllP~le~i~rr~~~~~~~~vgalIIsPTRELa~QI~~V~~~F~ 103 (567)
T KOG0345|consen 28 KMTPVQAATIPLLLK----NKDVVVEAVTGSGKTLAFLLPMLEIIYRREAKTPPGQVGALIISPTRELARQIREVAQPFL 103 (567)
T ss_pred ccCHHHHhhhHHHhc----CCceEEEcCCCCCchhhHHHHHHHHHHhhccCCCccceeEEEecCcHHHHHHHHHHHHHHH
Confidence 688999999987765 89999999999999999988887776332222 1 2699999976633 333455
Q ss_pred HHCCCCcEEEEecchhHHHHHHHhhhccCCCCccccccCCCCceEEEeeHHHHHhh----hccccCCCceEEEEcccccc
Q 042857 826 LWAPNLNVVEYHGCAKARAIIRQYEWHASDPDNLNKKTSSYKFNVLLTTYEMILAD----SSHLRGVPWEVLVVDEGHRL 901 (1404)
Q Consensus 826 kw~P~l~Vvvy~G~~~~R~~ir~~E~~~~~~~~~~~~~~~~kfdVvITTYe~l~~d----~~~L~~i~w~lVIVDEAHrl 901 (1404)
...|++++..+.|+....+-+..++ ....+|+|.|+..+..- ...+..-...+||+|||.||
T Consensus 104 ~~l~~l~~~l~vGG~~v~~Di~~fk--------------ee~~nIlVgTPGRL~di~~~~~~~l~~rsLe~LVLDEADrL 169 (567)
T KOG0345|consen 104 EHLPNLNCELLVGGRSVEEDIKTFK--------------EEGPNILVGTPGRLLDILQREAEKLSFRSLEILVLDEADRL 169 (567)
T ss_pred HhhhccceEEEecCccHHHHHHHHH--------------HhCCcEEEeCchhHHHHHhchhhhccccccceEEecchHhH
Confidence 5568999999999977665554432 12568999999877653 33355456789999999999
Q ss_pred CCCc--cHHHHHHhhcccccEEE-EeccCCCCChHHHHHHhhhhCCCCCCChhHHHHHhccccchHHHHHHHHhhhhhhh
Q 042857 902 KNSG--SKLFSLLNSFSFQHRVL-LTGTPLQNNIGEMYNLLNFLQPASFPSLSSFEEKFNDLTTTQKVEELKKLVAPHML 978 (1404)
Q Consensus 902 KN~~--Sk~~~~L~~l~~~~rLL-LTGTPlqNnl~EL~sLL~fL~P~~f~s~~~F~~~f~d~~~~~~i~~L~~lL~p~mL 978 (1404)
-..+ ..+..+|..+..++|-+ .|||--+. .. .|. ..-|
T Consensus 170 ldmgFe~~~n~ILs~LPKQRRTGLFSATq~~~-v~----------------------------------dL~----raGL 210 (567)
T KOG0345|consen 170 LDMGFEASVNTILSFLPKQRRTGLFSATQTQE-VE----------------------------------DLA----RAGL 210 (567)
T ss_pred hcccHHHHHHHHHHhcccccccccccchhhHH-HH----------------------------------HHH----Hhhc
Confidence 7644 56778888888888864 67874111 11 110 0111
Q ss_pred hhhHhhhhhcCCCceEEEEEec-C--CHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHhCCCCCCCCCCCC
Q 042857 979 RRLKKDAMQNIPPKTERMVPVE-L--SSIQAEYYRAMLTKNYQILRNIGKGVAQQSMLNIVMQLRKVCNHPYLIPGTEPD 1055 (1404)
Q Consensus 979 RR~K~dV~~~LPpk~e~iV~V~-L--S~~Qk~~Y~~il~~n~~~L~~~~kg~~~~sllnilm~LRK~cnHP~L~~~~e~~ 1055 (1404)
| ......|... + +|...+.| |
T Consensus 211 R-----------Npv~V~V~~k~~~~tPS~L~~~-------------------------------------Y-------- 234 (567)
T KOG0345|consen 211 R-----------NPVRVSVKEKSKSATPSSLALE-------------------------------------Y-------- 234 (567)
T ss_pred c-----------CceeeeecccccccCchhhcce-------------------------------------e--------
Confidence 1 0001111000 0 11000000 0
Q ss_pred CCcHHHHHHHHHhhhhHHHHHHHHHHHHHHcCCeEEEEecchhHHHHHHHHHhhhcCCceEEEEeCCCCHHHHHHHHHHH
Q 042857 1056 SGSVEFLHEMRIKASAKLTLLHSMLKVLYKEGHRVLIFSQMTKLLDILEDYLNIEFGPKTYERVDGSVSVGDRQAAITRF 1135 (1404)
Q Consensus 1056 ~~~~e~l~~~~i~~SgKl~~L~kLL~kl~~~G~KVLIFSq~~~~LDiLed~L~~~f~g~~y~rLdGs~s~~eRq~~Id~F 1135 (1404)
+.+.+.-|+..|..+|.. ....|+|||...-...++...+|....+...+.-|||.+++..|..++..|
T Consensus 235 ---------~v~~a~eK~~~lv~~L~~--~~~kK~iVFF~TCasVeYf~~~~~~~l~~~~i~~iHGK~~q~~R~k~~~~F 303 (567)
T KOG0345|consen 235 ---------LVCEADEKLSQLVHLLNN--NKDKKCIVFFPTCASVEYFGKLFSRLLKKREIFSIHGKMSQKARAKVLEAF 303 (567)
T ss_pred ---------eEecHHHHHHHHHHHHhc--cccccEEEEecCcchHHHHHHHHHHHhCCCcEEEecchhcchhHHHHHHHH
Confidence 012345677778887776 456799999999888888888887666788899999999999999999999
Q ss_pred hcCCCceEEEeecccccccccccCCCEEEEEcCCCCHhHHHHHHHhhhccCCCCcEEEEEE
Q 042857 1136 NQDKSRFVFLLSTRSCGLGINLATADTVIIYDSDFNPHADIQAMNRAHRIGQSKRLLVYRL 1196 (1404)
Q Consensus 1136 n~~~s~~VfLLSTrAgG~GINL~~AdtVIi~DsdWNP~~d~QAigRahRiGQ~k~V~VYrL 1196 (1404)
....+. +|++|.++++|||++..|.||.||||-+|..+.+|.||+.|.|....-.||-+
T Consensus 304 ~~~~~~--vl~~TDVaARGlDip~iD~VvQ~DpP~~~~~FvHR~GRTaR~gr~G~Aivfl~ 362 (567)
T KOG0345|consen 304 RKLSNG--VLFCTDVAARGLDIPGIDLVVQFDPPKDPSSFVHRCGRTARAGREGNAIVFLN 362 (567)
T ss_pred HhccCc--eEEeehhhhccCCCCCceEEEecCCCCChhHHHhhcchhhhccCccceEEEec
Confidence 875444 78999999999999999999999999999999999999999998777655443
No 56
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.80 E-value=2.1e-18 Score=200.58 Aligned_cols=373 Identities=19% Similarity=0.255 Sum_probs=233.2
Q ss_pred CCCHHHHHHHHHHHHhhc-----cCCcEEEEcCCCchHHHHHHHHHHHHHhhcc-CCCcEEEEeCCCCh-HHHHHHHHHH
Q 042857 755 ALFPHQLEALNWLRKCWH-----KSKNVILADEMGLGKTVSACAFISSLYCEFK-AKLPCLVLVPLSTM-PNWLAEFALW 827 (1404)
Q Consensus 755 ~L~pyQlegVnwL~~~~~-----~~~~~ILADEMGLGKTiqaIa~L~~L~~~~~-~~gP~LIVvP~Sll-~nW~rEf~kw 827 (1404)
.++|.|...+-|++.-.. ..+...++..+|.|||+....-|..++.... .+-++|||+|...| .|-.++|.+|
T Consensus 159 ~~FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTGSGKTLaY~iPIVQ~L~~R~v~~LRavVivPtr~L~~QV~~~f~~~ 238 (620)
T KOG0350|consen 159 RLFPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTGSGKTLAYVIPIVQLLSSRPVKRLRAVVIVPTRELALQVYDTFKRL 238 (620)
T ss_pred cccchHHHHHHHHHHhhcCCCCCCCCceEEecCCCCCceeeehhHHHHHHccCCccceEEEEEeeHHHHHHHHHHHHHHh
Confidence 589999999999977554 3466789999999999987777766654442 33578999999866 7899999999
Q ss_pred CCC--CcEEEEecchhHHHHHHHhhhccCCCCccccccCCCCceEEEeeHHHHHhhhccccCC---CceEEEEccccccC
Q 042857 828 APN--LNVVEYHGCAKARAIIRQYEWHASDPDNLNKKTSSYKFNVLLTTYEMILADSSHLRGV---PWEVLVVDEGHRLK 902 (1404)
Q Consensus 828 ~P~--l~Vvvy~G~~~~R~~ir~~E~~~~~~~~~~~~~~~~kfdVvITTYe~l~~d~~~L~~i---~w~lVIVDEAHrlK 902 (1404)
++. +-|+...|...-+...+++. ......+.||+|+|+..+..+...-.++ +..++|||||.||.
T Consensus 239 ~~~tgL~V~~~sgq~sl~~E~~qL~----------~~~~~~~~DIlVaTPGRLVDHl~~~k~f~Lk~LrfLVIDEADRll 308 (620)
T KOG0350|consen 239 NSGTGLAVCSLSGQNSLEDEARQLA----------SDPPECRIDILVATPGRLVDHLNNTKSFDLKHLRFLVIDEADRLL 308 (620)
T ss_pred ccCCceEEEecccccchHHHHHHHh----------cCCCccccceEEcCchHHHHhccCCCCcchhhceEEEechHHHHH
Confidence 874 66777788777666665542 1122347899999999999876543333 46799999999997
Q ss_pred CCc--cHHHHHHhhcccccEEEEeccCCCCChHHHHHHhhhhCCCCCCChhHHHHHhccccchHHHHHHHHhhhhhhhhh
Q 042857 903 NSG--SKLFSLLNSFSFQHRVLLTGTPLQNNIGEMYNLLNFLQPASFPSLSSFEEKFNDLTTTQKVEELKKLVAPHMLRR 980 (1404)
Q Consensus 903 N~~--Sk~~~~L~~l~~~~rLLLTGTPlqNnl~EL~sLL~fL~P~~f~s~~~F~~~f~d~~~~~~i~~L~~lL~p~mLRR 980 (1404)
+.. ..+...+..+....++.+.+ .++.+..-..|..+... ...+.
T Consensus 309 ~qsfQ~Wl~~v~~~~~~~k~~~~~~--------nii~~~~~~~pt~~~e~---~t~~~---------------------- 355 (620)
T KOG0350|consen 309 DQSFQEWLDTVMSLCKTMKRVACLD--------NIIRQRQAPQPTVLSEL---LTKLG---------------------- 355 (620)
T ss_pred HHHHHHHHHHHHHHhCCchhhcChh--------hhhhhcccCCchhhHHH---HhhcC----------------------
Confidence 632 22333333333332322221 11111111111111100 00000
Q ss_pred hHhhhhhcCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHhCCCCCCCCCCCCC---C
Q 042857 981 LKKDAMQNIPPKTERMVPVELSSIQAEYYRAMLTKNYQILRNIGKGVAQQSMLNIVMQLRKVCNHPYLIPGTEPDS---G 1057 (1404)
Q Consensus 981 ~K~dV~~~LPpk~e~iV~V~LS~~Qk~~Y~~il~~n~~~L~~~~kg~~~~sllnilm~LRK~cnHP~L~~~~e~~~---~ 1057 (1404)
....+.++-.+-+.+...-.. +.+| -.+||.++.-..+.. .
T Consensus 356 ------------------~~~~~l~kL~~satLsqdP~K----------------l~~l--~l~~Prl~~v~~~~~~rys 399 (620)
T KOG0350|consen 356 ------------------KLYPPLWKLVFSATLSQDPSK----------------LKDL--TLHIPRLFHVSKPLIGRYS 399 (620)
T ss_pred ------------------CcCchhHhhhcchhhhcChHH----------------Hhhh--hcCCCceEEeecccceeee
Confidence 000111111111111111000 1111 123454443222111 1
Q ss_pred cHHHHHHHHHhhhh--HHHHHHHHHHHHHHcCCeEEEEecchhHHHHHHHHHhhhcC--CceEEEEeCCCCHHHHHHHHH
Q 042857 1058 SVEFLHEMRIKASA--KLTLLHSMLKVLYKEGHRVLIFSQMTKLLDILEDYLNIEFG--PKTYERVDGSVSVGDRQAAIT 1133 (1404)
Q Consensus 1058 ~~e~l~~~~i~~Sg--Kl~~L~kLL~kl~~~G~KVLIFSq~~~~LDiLed~L~~~f~--g~~y~rLdGs~s~~eRq~~Id 1133 (1404)
.+..+....+-... |-..+..+|.. ....|+|+|+........|...|...|. ...+..+.|+.+...|.+++.
T Consensus 400 lp~~l~~~~vv~~~~~kpl~~~~lI~~--~k~~r~lcf~~S~~sa~Rl~~~L~v~~~~~~~~~s~~t~~l~~k~r~k~l~ 477 (620)
T KOG0350|consen 400 LPSSLSHRLVVTEPKFKPLAVYALITS--NKLNRTLCFVNSVSSANRLAHVLKVEFCSDNFKVSEFTGQLNGKRRYKMLE 477 (620)
T ss_pred cChhhhhceeecccccchHhHHHHHHH--hhcceEEEEecchHHHHHHHHHHHHHhccccchhhhhhhhhhHHHHHHHHH
Confidence 11222222222333 33344445544 4578999999999888777777764433 344556899999999999999
Q ss_pred HHhcCCCceEEEeecccccccccccCCCEEEEEcCCCCHhHHHHHHHhhhccCCCCcEEEEEEeeCCCHHHHHHHHHHHH
Q 042857 1134 RFNQDKSRFVFLLSTRSCGLGINLATADTVIIYDSDFNPHADIQAMNRAHRIGQSKRLLVYRLVVRASVEERILQLAKKK 1213 (1404)
Q Consensus 1134 ~Fn~~~s~~VfLLSTrAgG~GINL~~AdtVIi~DsdWNP~~d~QAigRahRiGQ~k~V~VYrLvt~~TvEE~Ilq~a~~K 1213 (1404)
+|+.++.. +||++.++.+||++...+.||.||+|-.-..|++|.||..|.||... +|.|+... |++.|-..-+|
T Consensus 478 ~f~~g~i~--vLIcSD~laRGiDv~~v~~VINYd~P~~~ktyVHR~GRTARAgq~G~--a~tll~~~--~~r~F~klL~~ 551 (620)
T KOG0350|consen 478 KFAKGDIN--VLICSDALARGIDVNDVDNVINYDPPASDKTYVHRAGRTARAGQDGY--AITLLDKH--EKRLFSKLLKK 551 (620)
T ss_pred HHhcCCce--EEEehhhhhcCCcccccceEeecCCCchhhHHHHhhcccccccCCce--EEEeeccc--cchHHHHHHHH
Confidence 99987776 89999999999999999999999999999999999999999999654 56676654 45555444444
Q ss_pred H
Q 042857 1214 L 1214 (1404)
Q Consensus 1214 l 1214 (1404)
.
T Consensus 552 ~ 552 (620)
T KOG0350|consen 552 T 552 (620)
T ss_pred h
Confidence 3
No 57
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=99.79 E-value=2e-17 Score=195.95 Aligned_cols=323 Identities=14% Similarity=0.212 Sum_probs=196.4
Q ss_pred EEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEeCCC-ChHHHHHHHHHHCCCCcEEEEecchhHHHHHHHhhhccCC
Q 042857 777 VILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLS-TMPNWLAEFALWAPNLNVVEYHGCAKARAIIRQYEWHASD 855 (1404)
Q Consensus 777 ~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP~S-ll~nW~rEf~kw~P~l~Vvvy~G~~~~R~~ir~~E~~~~~ 855 (1404)
+++..++|.|||.+++.++...... ...+++++|+|.. ++.++.+.+..++.. ++..++|...... .... .+
T Consensus 2 vvi~apTGsGKT~~~~~~~l~~~~~-~~~~~ii~v~P~~~L~~q~~~~l~~~f~~-~~~~~~~~~~~~~-~~~~----~~ 74 (358)
T TIGR01587 2 LVIEAPTGYGKTEAALLWALHSIKS-QKADRVIIALPTRATINAMYRRAKELFGS-NLGLLHSSSSFKR-IKEM----GD 74 (358)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHhh-CCCCeEEEEeehHHHHHHHHHHHHHHhCc-ccEEeeccHHHHH-Hhcc----CC
Confidence 5788999999999999888776543 3445799999975 558999999988744 5666676543211 0000 00
Q ss_pred CCcc--------ccccCCCCceEEEeeHHHHHhhhcc--------ccCCCceEEEEccccccCCCcc-HHHHHHhhcc--
Q 042857 856 PDNL--------NKKTSSYKFNVLLTTYEMILADSSH--------LRGVPWEVLVVDEGHRLKNSGS-KLFSLLNSFS-- 916 (1404)
Q Consensus 856 ~~~~--------~~~~~~~kfdVvITTYe~l~~d~~~--------L~~i~w~lVIVDEAHrlKN~~S-k~~~~L~~l~-- 916 (1404)
.... .........+|+++|++.+...... +..+...+||+||+|.+..... .+...+..+.
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~l~~~l~~l~~~ 154 (358)
T TIGR01587 75 SEEFEHLFPLYIHSNDKLFLDPITVCTIDQVLKSVFGEFGHYEFTLASIANSLLIFDEVHFYDEYTLALILAVLEVLKDN 154 (358)
T ss_pred chhHHHHHHHHhhchhhhhhCCeeeCCHHHHHHHHhcccchHHHHHHHhcCCEEEEeCCCCCCHHHHHHHHHHHHHHHHc
Confidence 0000 0001123567999999987654221 1223347899999999975321 2333333333
Q ss_pred cccEEEEeccCCCCChHHHHHHhhhhCCCCCCChhHHHHHhccccchHHHHHHHHhhhhhhhhhhHhhhhhcCCCceEEE
Q 042857 917 FQHRVLLTGTPLQNNIGEMYNLLNFLQPASFPSLSSFEEKFNDLTTTQKVEELKKLVAPHMLRRLKKDAMQNIPPKTERM 996 (1404)
Q Consensus 917 ~~~rLLLTGTPlqNnl~EL~sLL~fL~P~~f~s~~~F~~~f~d~~~~~~i~~L~~lL~p~mLRR~K~dV~~~LPpk~e~i 996 (1404)
....++||||+- ..+.+ |+ ..+.. ......++
T Consensus 155 ~~~~i~~SATlp-~~l~~------~~------------~~~~~------------------------~~~~~~~~----- 186 (358)
T TIGR01587 155 DVPILLMSATLP-KFLKE------YA------------EKIGY------------------------VEFNEPLD----- 186 (358)
T ss_pred CCCEEEEecCch-HHHHH------HH------------hcCCC------------------------cccccCCC-----
Confidence 335688999962 11111 10 00000 00000000
Q ss_pred EEecCCHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCcHHHHHHHHHhhhhHHHHH
Q 042857 997 VPVELSSIQAEYYRAMLTKNYQILRNIGKGVAQQSMLNIVMQLRKVCNHPYLIPGTEPDSGSVEFLHEMRIKASAKLTLL 1076 (1404)
Q Consensus 997 V~V~LS~~Qk~~Y~~il~~n~~~L~~~~kg~~~~sllnilm~LRK~cnHP~L~~~~e~~~~~~e~l~~~~i~~SgKl~~L 1076 (1404)
..+.. ..-.|++..... ....|...+
T Consensus 187 ----~~~~~-----------------------------------~~~~~~~~~~~~---------------~~~~~~~~l 212 (358)
T TIGR01587 187 ----LKEER-----------------------------------RFERHRFIKIES---------------DKVGEISSL 212 (358)
T ss_pred ----Ccccc-----------------------------------ccccccceeecc---------------ccccCHHHH
Confidence 00000 000111110000 001233344
Q ss_pred HHHHHHHHHcCCeEEEEecchhHHHHHHHHHhhhcCCceEEEEeCCCCHHHHHHH----HHHHhcCCCceEEEeeccccc
Q 042857 1077 HSMLKVLYKEGHRVLIFSQMTKLLDILEDYLNIEFGPKTYERVDGSVSVGDRQAA----ITRFNQDKSRFVFLLSTRSCG 1152 (1404)
Q Consensus 1077 ~kLL~kl~~~G~KVLIFSq~~~~LDiLed~L~~~f~g~~y~rLdGs~s~~eRq~~----Id~Fn~~~s~~VfLLSTrAgG 1152 (1404)
..++.. ...+.++|||++.....+.+...|...+.+..+..+||.++..+|.+. ++.|.++.. .+|++|.+++
T Consensus 213 ~~l~~~-~~~~~~~lVf~~t~~~~~~~~~~L~~~~~~~~~~~~h~~~~~~~r~~~~~~~~~~f~~~~~--~ilvaT~~~~ 289 (358)
T TIGR01587 213 ERLLEF-IKKGGKIAIIVNTVDRAQEFYQQLKENAPEEEIMLLHSRFTEKDRAKKEAELLEEMKKNEK--FVIVATQVIE 289 (358)
T ss_pred HHHHHH-hhCCCeEEEEECCHHHHHHHHHHHHhhcCCCeEEEEECCCCHHHHHHHHHHHHHHhcCCCC--eEEEECcchh
Confidence 444433 346789999999999999999999876444568899999999999764 888976443 4899999999
Q ss_pred ccccccCCCEEEEEcCCCCHhHHHHHHHhhhccCCCC----cEEEEEEeeCC---CHHHHHHHHHHHHH
Q 042857 1153 LGINLATADTVIIYDSDFNPHADIQAMNRAHRIGQSK----RLLVYRLVVRA---SVEERILQLAKKKL 1214 (1404)
Q Consensus 1153 ~GINL~~AdtVIi~DsdWNP~~d~QAigRahRiGQ~k----~V~VYrLvt~~---TvEE~Ilq~a~~Kl 1214 (1404)
+|||+ .+++||.++.+ +..++|++||++|.|... .|.||.....+ .++..++++...++
T Consensus 290 ~GiDi-~~~~vi~~~~~--~~~~iqr~GR~gR~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~t~~~~ 355 (358)
T TIGR01587 290 ASLDI-SADVMITELAP--IDSLIQRLGRLHRYGRKNGENFEVYIITIAPEGKLFPYPYELVERTIQKL 355 (358)
T ss_pred ceecc-CCCEEEEcCCC--HHHHHHHhccccCCCCCCCCCCeEEEEeecCCCCeecCCHHHHHHHHHHH
Confidence 99999 48999998765 889999999999999753 46666655544 45566666555443
No 58
>PRK02362 ski2-like helicase; Provisional
Probab=99.79 E-value=1.9e-17 Score=213.59 Aligned_cols=319 Identities=20% Similarity=0.166 Sum_probs=198.6
Q ss_pred CCCHHHHHHHHHHHHhhccCCcEEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEeCCC-ChHHHHHHHHHHCC-CCc
Q 042857 755 ALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLS-TMPNWLAEFALWAP-NLN 832 (1404)
Q Consensus 755 ~L~pyQlegVnwL~~~~~~~~~~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP~S-ll~nW~rEf~kw~P-~l~ 832 (1404)
+|+|+|.+++.-+ +..+.++|++..+|.|||+.+...+...+. ..+.+|+|+|.. ++.++.++|.++.+ +++
T Consensus 23 ~l~p~Q~~ai~~~---~~~g~nvlv~APTGSGKTlia~lail~~l~---~~~kal~i~P~raLa~q~~~~~~~~~~~g~~ 96 (737)
T PRK02362 23 ELYPPQAEAVEAG---LLDGKNLLAAIPTASGKTLIAELAMLKAIA---RGGKALYIVPLRALASEKFEEFERFEELGVR 96 (737)
T ss_pred cCCHHHHHHHHHH---HhCCCcEEEECCCcchHHHHHHHHHHHHHh---cCCcEEEEeChHHHHHHHHHHHHHhhcCCCE
Confidence 6999999999753 345899999999999999998765554432 245799999986 55889999988754 678
Q ss_pred EEEEecchhHHHHHHHhhhccCCCCccccccCCCCceEEEeeHHHHHhhhc----cccCCCceEEEEccccccCCCc--c
Q 042857 833 VVEYHGCAKARAIIRQYEWHASDPDNLNKKTSSYKFNVLLTTYEMILADSS----HLRGVPWEVLVVDEGHRLKNSG--S 906 (1404)
Q Consensus 833 Vvvy~G~~~~R~~ir~~E~~~~~~~~~~~~~~~~kfdVvITTYe~l~~d~~----~L~~i~w~lVIVDEAHrlKN~~--S 906 (1404)
+..++|+..... ......+|+|+|++.+..-.. .+ -..++|||||+|.+.+.. .
T Consensus 97 v~~~tGd~~~~~------------------~~l~~~~IiV~Tpek~~~llr~~~~~l--~~v~lvViDE~H~l~d~~rg~ 156 (737)
T PRK02362 97 VGISTGDYDSRD------------------EWLGDNDIIVATSEKVDSLLRNGAPWL--DDITCVVVDEVHLIDSANRGP 156 (737)
T ss_pred EEEEeCCcCccc------------------cccCCCCEEEECHHHHHHHHhcChhhh--hhcCEEEEECccccCCCcchH
Confidence 888888643221 011346899999987744221 12 245899999999996532 2
Q ss_pred HHHHHHhhc----ccccEEEEeccCCCCChHHHHHHhhhhCCCCCCChhHHHHHhccccchHHHHHHHHhhhhhhhhhhH
Q 042857 907 KLFSLLNSF----SFQHRVLLTGTPLQNNIGEMYNLLNFLQPASFPSLSSFEEKFNDLTTTQKVEELKKLVAPHMLRRLK 982 (1404)
Q Consensus 907 k~~~~L~~l----~~~~rLLLTGTPlqNnl~EL~sLL~fL~P~~f~s~~~F~~~f~d~~~~~~i~~L~~lL~p~mLRR~K 982 (1404)
.+-..+..+ .....++||||. .|..++.. |+....|.+ . .+|.-+
T Consensus 157 ~le~il~rl~~~~~~~qii~lSATl--~n~~~la~---wl~~~~~~~------~----------------~rpv~l---- 205 (737)
T PRK02362 157 TLEVTLAKLRRLNPDLQVVALSATI--GNADELAD---WLDAELVDS------E----------------WRPIDL---- 205 (737)
T ss_pred HHHHHHHHHHhcCCCCcEEEEcccC--CCHHHHHH---HhCCCcccC------C----------------CCCCCC----
Confidence 222223332 234568899996 24455433 232211100 0 001000
Q ss_pred hhhhhcCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCcHHHH
Q 042857 983 KDAMQNIPPKTERMVPVELSSIQAEYYRAMLTKNYQILRNIGKGVAQQSMLNIVMQLRKVCNHPYLIPGTEPDSGSVEFL 1062 (1404)
Q Consensus 983 ~dV~~~LPpk~e~iV~V~LS~~Qk~~Y~~il~~n~~~L~~~~kg~~~~sllnilm~LRK~cnHP~L~~~~e~~~~~~e~l 1062 (1404)
...+..-. + ++ . . . . +..+... .
T Consensus 206 ----------~~~v~~~~----~--~~----------~---~-~-~----------------~~~~~~~----~------ 228 (737)
T PRK02362 206 ----------REGVFYGG----A--IH----------F---D-D-S----------------QREVEVP----S------ 228 (737)
T ss_pred ----------eeeEecCC----e--ec----------c---c-c-c----------------cccCCCc----c------
Confidence 00000000 0 00 0 0 0 0 0000000 0
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHcCCeEEEEecchhHHHHHHHHHhhhcC------------------------------
Q 042857 1063 HEMRIKASAKLTLLHSMLKVLYKEGHRVLIFSQMTKLLDILEDYLNIEFG------------------------------ 1112 (1404)
Q Consensus 1063 ~~~~i~~SgKl~~L~kLL~kl~~~G~KVLIFSq~~~~LDiLed~L~~~f~------------------------------ 1112 (1404)
....+ .++......+.++|||++.....+.+...|.....
T Consensus 229 ------~~~~~----~~~~~~~~~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L 298 (737)
T PRK02362 229 ------KDDTL----NLVLDTLEEGGQCLVFVSSRRNAEGFAKRAASALKKTLTAAERAELAELAEEIREVSDTETSKDL 298 (737)
T ss_pred ------chHHH----HHHHHHHHcCCCeEEEEeCHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhccCccccHHH
Confidence 00111 12222334688999999998776666555543211
Q ss_pred ----CceEEEEeCCCCHHHHHHHHHHHhcCCCceEEEeecccccccccccCCCEEEE----Ec-----CCCCHhHHHHHH
Q 042857 1113 ----PKTYERVDGSVSVGDRQAAITRFNQDKSRFVFLLSTRSCGLGINLATADTVII----YD-----SDFNPHADIQAM 1179 (1404)
Q Consensus 1113 ----g~~y~rLdGs~s~~eRq~~Id~Fn~~~s~~VfLLSTrAgG~GINL~~AdtVIi----~D-----sdWNP~~d~QAi 1179 (1404)
...+..+||+++..+|..+.+.|+++.-. +|++|...+.|||+++...||. || .+.++..+.|++
T Consensus 299 ~~~l~~gva~hHagl~~~eR~~ve~~Fr~G~i~--VLvaT~tla~GvnlPa~~VVI~~~~~yd~~~g~~~~s~~~y~Qm~ 376 (737)
T PRK02362 299 ADCVAKGAAFHHAGLSREHRELVEDAFRDRLIK--VISSTPTLAAGLNLPARRVIIRDYRRYDGGAGMQPIPVLEYHQMA 376 (737)
T ss_pred HHHHHhCEEeecCCCCHHHHHHHHHHHHcCCCe--EEEechhhhhhcCCCceEEEEecceeecCCCCceeCCHHHHHHHh
Confidence 12467789999999999999999875544 8999999999999998777765 77 478899999999
Q ss_pred HhhhccCCCCcEEEEEEeeC
Q 042857 1180 NRAHRIGQSKRLLVYRLVVR 1199 (1404)
Q Consensus 1180 gRahRiGQ~k~V~VYrLvt~ 1199 (1404)
|||+|.|....-.++-+...
T Consensus 377 GRAGR~g~d~~G~~ii~~~~ 396 (737)
T PRK02362 377 GRAGRPGLDPYGEAVLLAKS 396 (737)
T ss_pred hcCCCCCCCCCceEEEEecC
Confidence 99999998644344444433
No 59
>PRK01172 ski2-like helicase; Provisional
Probab=99.78 E-value=6.6e-17 Score=206.90 Aligned_cols=304 Identities=22% Similarity=0.258 Sum_probs=191.6
Q ss_pred CCCCHHHHHHHHHHHHhhccCCcEEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEeCCCCh-HHHHHHHHHHCC-CC
Q 042857 754 GALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLSTM-PNWLAEFALWAP-NL 831 (1404)
Q Consensus 754 ~~L~pyQlegVnwL~~~~~~~~~~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP~Sll-~nW~rEf~kw~P-~l 831 (1404)
.+|+|+|.++++.+ ..+.++|++.++|.|||+++..++...... .+.+|+|+|...+ .++.++|.++.. +.
T Consensus 21 ~~l~~~Q~~ai~~l----~~~~nvlv~apTGSGKTl~a~lail~~l~~---~~k~v~i~P~raLa~q~~~~~~~l~~~g~ 93 (674)
T PRK01172 21 FELYDHQRMAIEQL----RKGENVIVSVPTAAGKTLIAYSAIYETFLA---GLKSIYIVPLRSLAMEKYEELSRLRSLGM 93 (674)
T ss_pred CCCCHHHHHHHHHH----hcCCcEEEECCCCchHHHHHHHHHHHHHHh---CCcEEEEechHHHHHHHHHHHHHHhhcCC
Confidence 46999999999875 348899999999999999887666554432 3568999998644 788888887653 56
Q ss_pred cEEEEecchhHHHHHHHhhhccCCCCccccccCCCCceEEEeeHHHHHhh----hccccCCCceEEEEccccccCCCc--
Q 042857 832 NVVEYHGCAKARAIIRQYEWHASDPDNLNKKTSSYKFNVLLTTYEMILAD----SSHLRGVPWEVLVVDEGHRLKNSG-- 905 (1404)
Q Consensus 832 ~Vvvy~G~~~~R~~ir~~E~~~~~~~~~~~~~~~~kfdVvITTYe~l~~d----~~~L~~i~w~lVIVDEAHrlKN~~-- 905 (1404)
.+..+.|...... ......+|+|+|++.+..- ...+. ++++|||||+|.+....
T Consensus 94 ~v~~~~G~~~~~~------------------~~~~~~dIiv~Tpek~~~l~~~~~~~l~--~v~lvViDEaH~l~d~~rg 153 (674)
T PRK01172 94 RVKISIGDYDDPP------------------DFIKRYDVVILTSEKADSLIHHDPYIIN--DVGLIVADEIHIIGDEDRG 153 (674)
T ss_pred eEEEEeCCCCCCh------------------hhhccCCEEEECHHHHHHHHhCChhHHh--hcCEEEEecchhccCCCcc
Confidence 7777777543210 0012468999999876432 22222 46799999999996432
Q ss_pred cHHHHHHhh---cc-cccEEEEeccCCCCChHHHHHHhhhhCCCCCCChhHHHHHhccccchHHHHHHHHhhhhhhhhhh
Q 042857 906 SKLFSLLNS---FS-FQHRVLLTGTPLQNNIGEMYNLLNFLQPASFPSLSSFEEKFNDLTTTQKVEELKKLVAPHMLRRL 981 (1404)
Q Consensus 906 Sk~~~~L~~---l~-~~~rLLLTGTPlqNnl~EL~sLL~fL~P~~f~s~~~F~~~f~d~~~~~~i~~L~~lL~p~mLRR~ 981 (1404)
..+...+.. +. ....++||||+ .|..++- .|+....|.. .| +
T Consensus 154 ~~le~ll~~~~~~~~~~riI~lSATl--~n~~~la---~wl~~~~~~~------~~----------------r------- 199 (674)
T PRK01172 154 PTLETVLSSARYVNPDARILALSATV--SNANELA---QWLNASLIKS------NF----------------R------- 199 (674)
T ss_pred HHHHHHHHHHHhcCcCCcEEEEeCcc--CCHHHHH---HHhCCCccCC------CC----------------C-------
Confidence 222223322 22 23468899997 2344332 2332211100 00 0
Q ss_pred HhhhhhcCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCcHHH
Q 042857 982 KKDAMQNIPPKTERMVPVELSSIQAEYYRAMLTKNYQILRNIGKGVAQQSMLNIVMQLRKVCNHPYLIPGTEPDSGSVEF 1061 (1404)
Q Consensus 982 K~dV~~~LPpk~e~iV~V~LS~~Qk~~Y~~il~~n~~~L~~~~kg~~~~sllnilm~LRK~cnHP~L~~~~e~~~~~~e~ 1061 (1404)
..| ....++... ..| . .....
T Consensus 200 ------~vp-l~~~i~~~~------~~~--------------------------------------~-~~~~~------- 220 (674)
T PRK01172 200 ------PVP-LKLGILYRK------RLI--------------------------------------L-DGYER------- 220 (674)
T ss_pred ------CCC-eEEEEEecC------eee--------------------------------------e-ccccc-------
Confidence 011 111111000 000 0 00000
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHcCCeEEEEecchhHHHHHHHHHhhhcCC-----------------------ceEEE
Q 042857 1062 LHEMRIKASAKLTLLHSMLKVLYKEGHRVLIFSQMTKLLDILEDYLNIEFGP-----------------------KTYER 1118 (1404)
Q Consensus 1062 l~~~~i~~SgKl~~L~kLL~kl~~~G~KVLIFSq~~~~LDiLed~L~~~f~g-----------------------~~y~r 1118 (1404)
... .+..++......|.++|||++.....+.+...|...++. ..+..
T Consensus 221 ---------~~~-~~~~~i~~~~~~~~~vLVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~ 290 (674)
T PRK01172 221 ---------SQV-DINSLIKETVNDGGQVLVFVSSRKNAEDYAEMLIQHFPEFNDFKVSSENNNVYDDSLNEMLPHGVAF 290 (674)
T ss_pred ---------ccc-cHHHHHHHHHhCCCcEEEEeccHHHHHHHHHHHHHhhhhcccccccccccccccHHHHHHHhcCEEE
Confidence 000 012334444566889999999888777776666543211 23567
Q ss_pred EeCCCCHHHHHHHHHHHhcCCCceEEEeecccccccccccCCCEEEEEcC---------CCCHhHHHHHHHhhhccCCCC
Q 042857 1119 VDGSVSVGDRQAAITRFNQDKSRFVFLLSTRSCGLGINLATADTVIIYDS---------DFNPHADIQAMNRAHRIGQSK 1189 (1404)
Q Consensus 1119 LdGs~s~~eRq~~Id~Fn~~~s~~VfLLSTrAgG~GINL~~AdtVIi~Ds---------dWNP~~d~QAigRahRiGQ~k 1189 (1404)
+||+++..+|..+.+.|.++... +|++|.+++.|||+++ .+|||+|. ++++..+.|++|||+|.|...
T Consensus 291 ~hagl~~~eR~~ve~~f~~g~i~--VLvaT~~la~Gvnipa-~~VII~~~~~~~~~~~~~~s~~~~~Qm~GRAGR~g~d~ 367 (674)
T PRK01172 291 HHAGLSNEQRRFIEEMFRNRYIK--VIVATPTLAAGVNLPA-RLVIVRDITRYGNGGIRYLSNMEIKQMIGRAGRPGYDQ 367 (674)
T ss_pred ecCCCCHHHHHHHHHHHHcCCCe--EEEecchhhccCCCcc-eEEEEcCceEeCCCCceeCCHHHHHHHhhcCCCCCCCC
Confidence 89999999999999999865544 8999999999999985 68888764 357889999999999999654
Q ss_pred c
Q 042857 1190 R 1190 (1404)
Q Consensus 1190 ~ 1190 (1404)
.
T Consensus 368 ~ 368 (674)
T PRK01172 368 Y 368 (674)
T ss_pred c
Confidence 4
No 60
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=99.78 E-value=2.4e-17 Score=208.77 Aligned_cols=313 Identities=21% Similarity=0.191 Sum_probs=191.8
Q ss_pred CCCCCCHHHHHHHHHHHHhhccCC-cEEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEE-EeCCCCh-HHHHHHHHHHC
Q 042857 752 KGGALFPHQLEALNWLRKCWHKSK-NVILADEMGLGKTVSACAFISSLYCEFKAKLPCLV-LVPLSTM-PNWLAEFALWA 828 (1404)
Q Consensus 752 ~g~~L~pyQlegVnwL~~~~~~~~-~~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LI-VvP~Sll-~nW~rEf~kw~ 828 (1404)
.|.+++|||.+++..++. |. ..++...+|+|||..+.+|+..+....... ..|| +||...| .|-..+|.+|.
T Consensus 12 ~G~~PtpiQ~~~i~~il~----G~~~v~~~apTGSGKTaa~aafll~~~~~~~~~-~rLv~~vPtReLa~Qi~~~~~~~~ 86 (844)
T TIGR02621 12 HGYSPFPWQLSLAERFVA----GQPPESCSTPTGLGKTSIIAAWLLAVEIGAKVP-RRLVYVVNRRTVVDQVTEEAEKIG 86 (844)
T ss_pred hCCCCCHHHHHHHHHHHc----CCCcceEecCCCCcccHHHHHhhcccccccccc-ceEEEeCchHHHHHHHHHHHHHHH
Confidence 355699999999987654 55 567778999999986655555442221122 3455 6698766 78888888776
Q ss_pred C-------------------------CCcEEEEecchhHHHHHHHhhhccCCCCccccccCCCCceEEEeeHHHHHhhhc
Q 042857 829 P-------------------------NLNVVEYHGCAKARAIIRQYEWHASDPDNLNKKTSSYKFNVLLTTYEMILADSS 883 (1404)
Q Consensus 829 P-------------------------~l~Vvvy~G~~~~R~~ir~~E~~~~~~~~~~~~~~~~kfdVvITTYe~l~~d~~ 883 (1404)
- .+++..++|+......+... ..+.+|||+|.+++.+..-
T Consensus 87 k~l~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q~~~l---------------~~~p~IIVgT~D~i~sr~L 151 (844)
T TIGR02621 87 ERLPDVPEVEAALWALCSTRPEKKDRPLAISTLRGQFADNDEWMLD---------------PHRPAVIVGTVDMIGSRLL 151 (844)
T ss_pred HHhcccchhhhhhhhhhccccccccCCeEEEEEECCCChHHHHHhc---------------CCCCcEEEECHHHHcCCcc
Confidence 3 26677777776544333322 1356899999888865321
Q ss_pred c--------cc------CCCceEEEEccccccCCCccHHHHHHhhc--cc----ccEEEEeccCCCCChHHHHHHhhhhC
Q 042857 884 H--------LR------GVPWEVLVVDEGHRLKNSGSKLFSLLNSF--SF----QHRVLLTGTPLQNNIGEMYNLLNFLQ 943 (1404)
Q Consensus 884 ~--------L~------~i~w~lVIVDEAHrlKN~~Sk~~~~L~~l--~~----~~rLLLTGTPlqNnl~EL~sLL~fL~ 943 (1404)
+ +. -.+-.++|+||||-.......+.+++..+ .. ...++||||+-. .+.+ +...+.
T Consensus 152 ~~gYg~~~~~~pi~ag~L~~v~~LVLDEADLd~gF~~~l~~Il~~l~rp~~~rprQtLLFSAT~p~-ei~~---l~~~~~ 227 (844)
T TIGR02621 152 FSGYGCGFKSRPLHAGFLGQDALIVHDEAHLEPAFQELLKQIMNEQQRPPDFLPLRVVELTATSRT-DGPD---RTTLLS 227 (844)
T ss_pred ccccccccccccchhhhhccceEEEEehhhhccccHHHHHHHHHhcccCcccccceEEEEecCCCc-cHHH---HHHHHc
Confidence 0 00 12356999999993333333444444432 11 256899999722 1111 111111
Q ss_pred CCCCCChhHHHHHhccccchHHHHHHHHhhhhhhhhhhHhhhhhcCC-CceEEEEEecCCHHHHHHHHHHHHHHHHHHHh
Q 042857 944 PASFPSLSSFEEKFNDLTTTQKVEELKKLVAPHMLRRLKKDAMQNIP-PKTERMVPVELSSIQAEYYRAMLTKNYQILRN 1022 (1404)
Q Consensus 944 P~~f~s~~~F~~~f~d~~~~~~i~~L~~lL~p~mLRR~K~dV~~~LP-pk~e~iV~V~LS~~Qk~~Y~~il~~n~~~L~~ 1022 (1404)
.. ++...-.+. .+. ++..+.+ ..+..
T Consensus 228 ~~-----------------------------p~~i~V~~~----~l~a~ki~q~v--~v~~e------------------ 254 (844)
T TIGR02621 228 AE-----------------------------DYKHPVLKK----RLAAKKIVKLV--PPSDE------------------ 254 (844)
T ss_pred cC-----------------------------Cceeecccc----cccccceEEEE--ecChH------------------
Confidence 00 000000000 000 0111111 11100
Q ss_pred hccchhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCcHHHHHHHHHhhhhHHHHHHH-HHHHHHHcCCeEEEEecchhHHH
Q 042857 1023 IGKGVAQQSMLNIVMQLRKVCNHPYLIPGTEPDSGSVEFLHEMRIKASAKLTLLHS-MLKVLYKEGHRVLIFSQMTKLLD 1101 (1404)
Q Consensus 1023 ~~kg~~~~sllnilm~LRK~cnHP~L~~~~e~~~~~~e~l~~~~i~~SgKl~~L~k-LL~kl~~~G~KVLIFSq~~~~LD 1101 (1404)
.|+..+.. +...+...+.++|||++.+..++
T Consensus 255 ------------------------------------------------~Kl~~lv~~L~~ll~e~g~~vLVF~NTv~~Aq 286 (844)
T TIGR02621 255 ------------------------------------------------KFLSTMVKELNLLMKDSGGAILVFCRTVKHVR 286 (844)
T ss_pred ------------------------------------------------HHHHHHHHHHHHHHhhCCCcEEEEECCHHHHH
Confidence 01111111 11112346789999999999999
Q ss_pred HHHHHHhhhcCCceEEEEeCCCCHHHHH-----HHHHHHhc----CC-----CceEEEeecccccccccccCCCEEEEEc
Q 042857 1102 ILEDYLNIEFGPKTYERVDGSVSVGDRQ-----AAITRFNQ----DK-----SRFVFLLSTRSCGLGINLATADTVIIYD 1167 (1404)
Q Consensus 1102 iLed~L~~~f~g~~y~rLdGs~s~~eRq-----~~Id~Fn~----~~-----s~~VfLLSTrAgG~GINL~~AdtVIi~D 1167 (1404)
.|...|... ++ ..|||.+++.+|. .++++|.. .. ....+||+|.+++.|||+.. ++||++.
T Consensus 287 ~L~~~L~~~--g~--~lLHG~m~q~dR~~~~~~~il~~Fk~~~~~g~~~~~~~g~~ILVATdVaerGLDId~-d~VI~d~ 361 (844)
T TIGR02621 287 KVFAKLPKE--KF--ELLTGTLRGAERDDLVKKEIFNRFLPQMLSGSRARPQQGTVYLVCTSAGEVGVNISA-DHLVCDL 361 (844)
T ss_pred HHHHHHHhc--CC--eEeeCCCCHHHHhhHHHHHHHHHHhccccccccccccccceEEeccchhhhcccCCc-ceEEECC
Confidence 999999865 43 7899999999999 78999976 21 12468999999999999975 9999977
Q ss_pred CCCCHhHHHHHHHhhhccCCCCc--EEEEEE
Q 042857 1168 SDFNPHADIQAMNRAHRIGQSKR--LLVYRL 1196 (1404)
Q Consensus 1168 sdWNP~~d~QAigRahRiGQ~k~--V~VYrL 1196 (1404)
.+ +..++||+||++|.|.... +.|+.+
T Consensus 362 aP--~esyIQRiGRtgR~G~~~~~~i~vv~~ 390 (844)
T TIGR02621 362 AP--FESMQQRFGRVNRFGELQACQIAVVHL 390 (844)
T ss_pred CC--HHHHHHHhcccCCCCCCCCceEEEEee
Confidence 66 4799999999999998544 444433
No 61
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=99.77 E-value=8e-18 Score=184.07 Aligned_cols=313 Identities=20% Similarity=0.248 Sum_probs=219.0
Q ss_pred HHHHHHHHHHHHhhccCCcEEEEcCCCchHHHHH-HHHHHHHHhhccCCCcEEEEeCCCCh-HHHHHHHHHHCCC--CcE
Q 042857 758 PHQLEALNWLRKCWHKSKNVILADEMGLGKTVSA-CAFISSLYCEFKAKLPCLVLVPLSTM-PNWLAEFALWAPN--LNV 833 (1404)
Q Consensus 758 pyQlegVnwL~~~~~~~~~~ILADEMGLGKTiqa-Ia~L~~L~~~~~~~gP~LIVvP~Sll-~nW~rEf~kw~P~--l~V 833 (1404)
..|..++-.++. |+++|.....|.|||.+. |+++..+- -.....-+||+.|...+ .|-..-+...... +.+
T Consensus 52 ~IQqrAi~~Ilk----GrdViaQaqSGTGKTa~~si~vlq~~d-~~~r~tQ~lilsPTRELa~Qi~~vi~alg~~mnvq~ 126 (400)
T KOG0328|consen 52 AIQQRAIPQILK----GRDVIAQAQSGTGKTATFSISVLQSLD-ISVRETQALILSPTRELAVQIQKVILALGDYMNVQC 126 (400)
T ss_pred HHHhhhhhhhhc----ccceEEEecCCCCceEEEEeeeeeecc-cccceeeEEEecChHHHHHHHHHHHHHhcccccceE
Confidence 357777776665 999999999999999753 34443331 22222358999999877 5666666666543 455
Q ss_pred EEEecchhHHHHHHHhhhccCCCCccccccCCCCceEEEeeHHHHHhh--hccccCCCceEEEEccccccCCC--ccHHH
Q 042857 834 VEYHGCAKARAIIRQYEWHASDPDNLNKKTSSYKFNVLLTTYEMILAD--SSHLRGVPWEVLVVDEGHRLKNS--GSKLF 909 (1404)
Q Consensus 834 vvy~G~~~~R~~ir~~E~~~~~~~~~~~~~~~~kfdVvITTYe~l~~d--~~~L~~i~w~lVIVDEAHrlKN~--~Sk~~ 909 (1404)
....|+....+-|+..+ ...+||..|+..+.+- ...|+--...++|+|||..+.|. ..+++
T Consensus 127 hacigg~n~gedikkld---------------~G~hvVsGtPGrv~dmikr~~L~tr~vkmlVLDEaDemL~kgfk~Qiy 191 (400)
T KOG0328|consen 127 HACIGGKNLGEDIKKLD---------------YGQHVVSGTPGRVLDMIKRRSLRTRAVKMLVLDEADEMLNKGFKEQIY 191 (400)
T ss_pred EEEecCCccchhhhhhc---------------ccceEeeCCCchHHHHHHhccccccceeEEEeccHHHHHHhhHHHHHH
Confidence 56667666555555432 4678999999887653 34566667789999999998664 46788
Q ss_pred HHHhhcc-cccEEEEeccCCCCChHHHHHHhhhhCCCCCCChhHHHHHhccccchHHHHHHHHhhhhhhhhhhHhhhhhc
Q 042857 910 SLLNSFS-FQHRVLLTGTPLQNNIGEMYNLLNFLQPASFPSLSSFEEKFNDLTTTQKVEELKKLVAPHMLRRLKKDAMQN 988 (1404)
Q Consensus 910 ~~L~~l~-~~~rLLLTGTPlqNnl~EL~sLL~fL~P~~f~s~~~F~~~f~d~~~~~~i~~L~~lL~p~mLRR~K~dV~~~ 988 (1404)
...+.+. ....+++|||- +.|+..+.++..++..
T Consensus 192 diyr~lp~~~Qvv~~SATl----p~eilemt~kfmtdpv----------------------------------------- 226 (400)
T KOG0328|consen 192 DIYRYLPPGAQVVLVSATL----PHEILEMTEKFMTDPV----------------------------------------- 226 (400)
T ss_pred HHHHhCCCCceEEEEeccC----cHHHHHHHHHhcCCce-----------------------------------------
Confidence 8888887 55668899995 3344444333333221
Q ss_pred CCCceEEEEEecCCHH-HHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCcHHHHHHHHH
Q 042857 989 IPPKTERMVPVELSSI-QAEYYRAMLTKNYQILRNIGKGVAQQSMLNIVMQLRKVCNHPYLIPGTEPDSGSVEFLHEMRI 1067 (1404)
Q Consensus 989 LPpk~e~iV~V~LS~~-Qk~~Y~~il~~n~~~L~~~~kg~~~~sllnilm~LRK~cnHP~L~~~~e~~~~~~e~l~~~~i 1067 (1404)
...+-+=+++-+ -+++|-+.-.
T Consensus 227 ----rilvkrdeltlEgIKqf~v~ve~----------------------------------------------------- 249 (400)
T KOG0328|consen 227 ----RILVKRDELTLEGIKQFFVAVEK----------------------------------------------------- 249 (400)
T ss_pred ----eEEEecCCCchhhhhhheeeech-----------------------------------------------------
Confidence 111111122221 1111111100
Q ss_pred hhhhHHHHHHHHHHHHHHcCCeEEEEecchhHHHHHHHHHhhhcCCceEEEEeCCCCHHHHHHHHHHHhcCCCceEEEee
Q 042857 1068 KASAKLTLLHSMLKVLYKEGHRVLIFSQMTKLLDILEDYLNIEFGPKTYERVDGSVSVGDRQAAITRFNQDKSRFVFLLS 1147 (1404)
Q Consensus 1068 ~~SgKl~~L~kLL~kl~~~G~KVLIFSq~~~~LDiLed~L~~~f~g~~y~rLdGs~s~~eRq~~Id~Fn~~~s~~VfLLS 1147 (1404)
..-|+..|..+-..| .=...+|||+..+..|+|.+-++.. .+.+..+||.+++++|.+++..|+.+.+. +||+
T Consensus 250 -EewKfdtLcdLYd~L--tItQavIFcnTk~kVdwLtekm~~~--nftVssmHGDm~qkERd~im~dFRsg~Sr--vLit 322 (400)
T KOG0328|consen 250 -EEWKFDTLCDLYDTL--TITQAVIFCNTKRKVDWLTEKMREA--NFTVSSMHGDMEQKERDKIMNDFRSGKSR--VLIT 322 (400)
T ss_pred -hhhhHhHHHHHhhhh--ehheEEEEecccchhhHHHHHHHhh--CceeeeccCCcchhHHHHHHHHhhcCCce--EEEE
Confidence 012444444444333 1237899999999999999999877 78999999999999999999999998888 8999
Q ss_pred cccccccccccCCCEEEEEcCCCCHhHHHHHHHhhhccCCCCcEEEEEEeeCCC
Q 042857 1148 TRSCGLGINLATADTVIIYDSDFNPHADIQAMNRAHRIGQSKRLLVYRLVVRAS 1201 (1404)
Q Consensus 1148 TrAgG~GINL~~AdtVIi~DsdWNP~~d~QAigRahRiGQ~k~V~VYrLvt~~T 1201 (1404)
|.+-++||+++..+.||+||.|-|+..|++|+||.+|+|.+.- +..||....
T Consensus 323 TDVwaRGiDv~qVslviNYDLP~nre~YIHRIGRSGRFGRkGv--ainFVk~~d 374 (400)
T KOG0328|consen 323 TDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGV--AINFVKSDD 374 (400)
T ss_pred echhhccCCcceeEEEEecCCCccHHHHhhhhccccccCCcce--EEEEecHHH
Confidence 9999999999999999999999999999999999999997543 456776643
No 62
>PRK00254 ski2-like helicase; Provisional
Probab=99.75 E-value=4.5e-16 Score=200.52 Aligned_cols=319 Identities=19% Similarity=0.188 Sum_probs=194.0
Q ss_pred CCCHHHHHHHHHHHHhhccCCcEEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEeCCCCh-HHHHHHHHHHCC-CCc
Q 042857 755 ALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLSTM-PNWLAEFALWAP-NLN 832 (1404)
Q Consensus 755 ~L~pyQlegVnwL~~~~~~~~~~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP~Sll-~nW~rEf~kw~P-~l~ 832 (1404)
.|+|+|.+++.-. +..+.++|++..+|.|||+.+...+...+.. ..+.+|+|+|...+ .++.++|..|.. +++
T Consensus 23 ~l~~~Q~~ai~~~---~~~g~nvlv~apTGsGKT~~~~l~il~~l~~--~~~~~l~l~P~~aLa~q~~~~~~~~~~~g~~ 97 (720)
T PRK00254 23 ELYPPQAEALKSG---VLEGKNLVLAIPTASGKTLVAEIVMVNKLLR--EGGKAVYLVPLKALAEEKYREFKDWEKLGLR 97 (720)
T ss_pred CCCHHHHHHHHHH---HhCCCcEEEECCCCcHHHHHHHHHHHHHHHh--cCCeEEEEeChHHHHHHHHHHHHHHhhcCCE
Confidence 6999999999742 2358999999999999999985444433222 23579999998655 788888888753 578
Q ss_pred EEEEecchhHHHHHHHhhhccCCCCccccccCCCCceEEEeeHHHHHhhhc----cccCCCceEEEEccccccCC--Ccc
Q 042857 833 VVEYHGCAKARAIIRQYEWHASDPDNLNKKTSSYKFNVLLTTYEMILADSS----HLRGVPWEVLVVDEGHRLKN--SGS 906 (1404)
Q Consensus 833 Vvvy~G~~~~R~~ir~~E~~~~~~~~~~~~~~~~kfdVvITTYe~l~~d~~----~L~~i~w~lVIVDEAHrlKN--~~S 906 (1404)
+..++|....... .....+|+|+|++.+..... .+. +.++|||||+|.+.. .+.
T Consensus 98 v~~~~Gd~~~~~~------------------~~~~~~IiV~Tpe~~~~ll~~~~~~l~--~l~lvViDE~H~l~~~~rg~ 157 (720)
T PRK00254 98 VAMTTGDYDSTDE------------------WLGKYDIIIATAEKFDSLLRHGSSWIK--DVKLVVADEIHLIGSYDRGA 157 (720)
T ss_pred EEEEeCCCCCchh------------------hhccCCEEEEcHHHHHHHHhCCchhhh--cCCEEEEcCcCccCCccchH
Confidence 8888886432110 01256899999988754321 222 467999999999964 334
Q ss_pred HHHHHHhhcc-cccEEEEeccCCCCChHHHHHHhhhhCCCCCCChhHHHHHhccccchHHHHHHHHhhhhhhhhhhHhhh
Q 042857 907 KLFSLLNSFS-FQHRVLLTGTPLQNNIGEMYNLLNFLQPASFPSLSSFEEKFNDLTTTQKVEELKKLVAPHMLRRLKKDA 985 (1404)
Q Consensus 907 k~~~~L~~l~-~~~rLLLTGTPlqNnl~EL~sLL~fL~P~~f~s~~~F~~~f~d~~~~~~i~~L~~lL~p~mLRR~K~dV 985 (1404)
.+...+..+. ....++||||. .|..++.. |+....+.. . .+|
T Consensus 158 ~le~il~~l~~~~qiI~lSATl--~n~~~la~---wl~~~~~~~------~----------------~rp---------- 200 (720)
T PRK00254 158 TLEMILTHMLGRAQILGLSATV--GNAEELAE---WLNAELVVS------D----------------WRP---------- 200 (720)
T ss_pred HHHHHHHhcCcCCcEEEEEccC--CCHHHHHH---HhCCccccC------C----------------CCC----------
Confidence 4555555554 34568899997 23455443 222211100 0 000
Q ss_pred hhcCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCcHHHHHHH
Q 042857 986 MQNIPPKTERMVPVELSSIQAEYYRAMLTKNYQILRNIGKGVAQQSMLNIVMQLRKVCNHPYLIPGTEPDSGSVEFLHEM 1065 (1404)
Q Consensus 986 ~~~LPpk~e~iV~V~LS~~Qk~~Y~~il~~n~~~L~~~~kg~~~~sllnilm~LRK~cnHP~L~~~~e~~~~~~e~l~~~ 1065 (1404)
.|-... ++ ..- ..++. .+. ....
T Consensus 201 ---v~l~~~-~~-~~~----~~~~~--------------~~~-------------------------------~~~~--- 223 (720)
T PRK00254 201 ---VKLRKG-VF-YQG----FLFWE--------------DGK-------------------------------IERF--- 223 (720)
T ss_pred ---Ccceee-Ee-cCC----eeecc--------------Ccc-------------------------------hhcc---
Confidence 010000 00 000 00000 000 0000
Q ss_pred HHhhhhHHHHHHHHHHHHHHcCCeEEEEecchhHHHHHHHHHhhhc-------------------------------CCc
Q 042857 1066 RIKASAKLTLLHSMLKVLYKEGHRVLIFSQMTKLLDILEDYLNIEF-------------------------------GPK 1114 (1404)
Q Consensus 1066 ~i~~SgKl~~L~kLL~kl~~~G~KVLIFSq~~~~LDiLed~L~~~f-------------------------------~g~ 1114 (1404)
. ..+..++..+...|.++|||+........+...|.... -..
T Consensus 224 ---~----~~~~~~~~~~i~~~~~vLVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~ 296 (720)
T PRK00254 224 ---P----NSWESLVYDAVKKGKGALVFVNTRRSAEKEALELAKKIKRFLTKPELRALKELADSLEENPTNEKLKKALRG 296 (720)
T ss_pred ---h----HHHHHHHHHHHHhCCCEEEEEcChHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCcHHHHHHHhh
Confidence 0 00112222333467899999988765544433331100 012
Q ss_pred eEEEEeCCCCHHHHHHHHHHHhcCCCceEEEeecccccccccccCCCEEEE-------EcCCC-CHhHHHHHHHhhhccC
Q 042857 1115 TYERVDGSVSVGDRQAAITRFNQDKSRFVFLLSTRSCGLGINLATADTVII-------YDSDF-NPHADIQAMNRAHRIG 1186 (1404)
Q Consensus 1115 ~y~rLdGs~s~~eRq~~Id~Fn~~~s~~VfLLSTrAgG~GINL~~AdtVIi-------~DsdW-NP~~d~QAigRahRiG 1186 (1404)
.+..+||+++..+|..+.+.|+++.-. +|++|.+.+.|+|+++.+.||. ++.+. ....+.|++|||+|.|
T Consensus 297 gv~~hHagl~~~eR~~ve~~F~~G~i~--VLvaT~tLa~Gvnipa~~vVI~~~~~~~~~~~~~~~~~~~~Qm~GRAGR~~ 374 (720)
T PRK00254 297 GVAFHHAGLGRTERVLIEDAFREGLIK--VITATPTLSAGINLPAFRVIIRDTKRYSNFGWEDIPVLEIQQMMGRAGRPK 374 (720)
T ss_pred CEEEeCCCCCHHHHHHHHHHHHCCCCe--EEEeCcHHhhhcCCCceEEEECCceEcCCCCceeCCHHHHHHhhhccCCCC
Confidence 467899999999999999999876544 8999999999999998777763 33322 4457899999999988
Q ss_pred CCCcEEEEEEeeCCC
Q 042857 1187 QSKRLLVYRLVVRAS 1201 (1404)
Q Consensus 1187 Q~k~V~VYrLvt~~T 1201 (1404)
....-.++-+++...
T Consensus 375 ~d~~G~~ii~~~~~~ 389 (720)
T PRK00254 375 YDEVGEAIIVATTEE 389 (720)
T ss_pred cCCCceEEEEecCcc
Confidence 655545555555443
No 63
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.74 E-value=2.2e-17 Score=195.70 Aligned_cols=313 Identities=18% Similarity=0.226 Sum_probs=210.7
Q ss_pred CCCCHHHHHHHHHHHHhhccCCcEEEEcCCCchHHHHHHHHHHHH-Hhhcc---------CCCcEEEEeCCCCh-HHHHH
Q 042857 754 GALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSL-YCEFK---------AKLPCLVLVPLSTM-PNWLA 822 (1404)
Q Consensus 754 ~~L~pyQlegVnwL~~~~~~~~~~ILADEMGLGKTiqaIa~L~~L-~~~~~---------~~gP~LIVvP~Sll-~nW~r 822 (1404)
..+.|+|..++.-+.. |++.+.+..+|.|||...+.-+... +.... .....||++|+.-| .|-..
T Consensus 95 ~~ptpvQk~sip~i~~----Grdl~acAqTGsGKT~aFLiPii~~~~~~~~~~~~~~~~~~~P~~lIlapTReL~~Qi~n 170 (482)
T KOG0335|consen 95 TKPTPVQKYSIPIISG----GRDLMACAQTGSGKTAAFLIPIISYLLDEGPEDRGESGGGVYPRALILAPTRELVDQIYN 170 (482)
T ss_pred cCCCcceeeccceeec----CCceEEEccCCCcchHHHHHHHHHHHHhcCcccCcccCCCCCCceEEEeCcHHHhhHHHH
Confidence 4688999999876644 8999999999999999887655543 33321 12458999999755 89999
Q ss_pred HHHHHC--CCCcEEEEecchhHHHHHHHhhhccCCCCccccccCCCCceEEEeeHHHHHhhh--ccccCCCceEEEEccc
Q 042857 823 EFALWA--PNLNVVEYHGCAKARAIIRQYEWHASDPDNLNKKTSSYKFNVLLTTYEMILADS--SHLRGVPWEVLVVDEG 898 (1404)
Q Consensus 823 Ef~kw~--P~l~Vvvy~G~~~~R~~ir~~E~~~~~~~~~~~~~~~~kfdVvITTYe~l~~d~--~~L~~i~w~lVIVDEA 898 (1404)
|..++. ..++.++.+|+...+..++.. ...+||+++|...+..-. ..+..-...++|+|||
T Consensus 171 ea~k~~~~s~~~~~~~ygg~~~~~q~~~~---------------~~gcdIlvaTpGrL~d~~e~g~i~l~~~k~~vLDEA 235 (482)
T KOG0335|consen 171 EARKFSYLSGMKSVVVYGGTDLGAQLRFI---------------KRGCDILVATPGRLKDLIERGKISLDNCKFLVLDEA 235 (482)
T ss_pred HHHhhcccccceeeeeeCCcchhhhhhhh---------------ccCccEEEecCchhhhhhhcceeehhhCcEEEecch
Confidence 999886 357777777776666555442 247899999998887532 2222223449999999
Q ss_pred cccCC---CccHHHHHHhhcc-----cccEEEEeccCCCCChHHHHHHhhhhCCCCCCChhHHHHHhccccchHHHHHHH
Q 042857 899 HRLKN---SGSKLFSLLNSFS-----FQHRVLLTGTPLQNNIGEMYNLLNFLQPASFPSLSSFEEKFNDLTTTQKVEELK 970 (1404)
Q Consensus 899 HrlKN---~~Sk~~~~L~~l~-----~~~rLLLTGTPlqNnl~EL~sLL~fL~P~~f~s~~~F~~~f~d~~~~~~i~~L~ 970 (1404)
.+|-. ....+.+.+.... ...-+++|||=- .+ ++
T Consensus 236 DrMlD~mgF~p~Ir~iv~~~~~~~~~~~qt~mFSAtfp----~~----------------------------------iq 277 (482)
T KOG0335|consen 236 DRMLDEMGFEPQIRKIVEQLGMPPKNNRQTLLFSATFP----KE----------------------------------IQ 277 (482)
T ss_pred HHhhhhccccccHHHHhcccCCCCccceeEEEEeccCC----hh----------------------------------hh
Confidence 99864 2233444443332 222355555520 00 00
Q ss_pred Hhhhhhhhh-h--h-HhhhhhcCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHhCCC
Q 042857 971 KLVAPHMLR-R--L-KKDAMQNIPPKTERMVPVELSSIQAEYYRAMLTKNYQILRNIGKGVAQQSMLNIVMQLRKVCNHP 1046 (1404)
Q Consensus 971 ~lL~p~mLR-R--~-K~dV~~~LPpk~e~iV~V~LS~~Qk~~Y~~il~~n~~~L~~~~kg~~~~sllnilm~LRK~cnHP 1046 (1404)
.+...|+.- . + ...+...-......+++|
T Consensus 278 ~l~~~fl~~~yi~laV~rvg~~~~ni~q~i~~V----------------------------------------------- 310 (482)
T KOG0335|consen 278 RLAADFLKDNYIFLAVGRVGSTSENITQKILFV----------------------------------------------- 310 (482)
T ss_pred hhHHHHhhccceEEEEeeeccccccceeEeeee-----------------------------------------------
Confidence 000000000 0 0 000000000011111111
Q ss_pred CCCCCCCCCCCcHHHHHHHHHhhhhHHHHHHHHHHHHH---Hc----CCeEEEEecchhHHHHHHHHHhhhcCCceEEEE
Q 042857 1047 YLIPGTEPDSGSVEFLHEMRIKASAKLTLLHSMLKVLY---KE----GHRVLIFSQMTKLLDILEDYLNIEFGPKTYERV 1119 (1404)
Q Consensus 1047 ~L~~~~e~~~~~~e~l~~~~i~~SgKl~~L~kLL~kl~---~~----G~KVLIFSq~~~~LDiLed~L~~~f~g~~y~rL 1119 (1404)
....|...|.++|.... .. -++++||+...++++.|..+|... ++.+.-|
T Consensus 311 ---------------------~~~~kr~~Lldll~~~~~~~~~~~~~~e~tlvFvEt~~~~d~l~~~l~~~--~~~~~sI 367 (482)
T KOG0335|consen 311 ---------------------NEMEKRSKLLDLLNKDDGPPSDGEPKWEKTLVFVETKRGADELAAFLSSN--GYPAKSI 367 (482)
T ss_pred ---------------------cchhhHHHHHHHhhcccCCcccCCcccceEEEEeeccchhhHHHHHHhcC--CCCceee
Confidence 12233333444443322 11 248999999999999999999976 8999999
Q ss_pred eCCCCHHHHHHHHHHHhcCCCceEEEeecccccccccccCCCEEEEEcCCCCHhHHHHHHHhhhccCCCCcEEEEE
Q 042857 1120 DGSVSVGDRQAAITRFNQDKSRFVFLLSTRSCGLGINLATADTVIIYDSDFNPHADIQAMNRAHRIGQSKRLLVYR 1195 (1404)
Q Consensus 1120 dGs~s~~eRq~~Id~Fn~~~s~~VfLLSTrAgG~GINL~~AdtVIi~DsdWNP~~d~QAigRahRiGQ~k~V~VYr 1195 (1404)
||..++.+|.++++.|...... +|++|.++.+|||+...++||+||.|-+-..|++|+||.+|.|+....+.|.
T Consensus 368 hg~~tq~er~~al~~Fr~g~~p--vlVaT~VaaRGlDi~~V~hVInyDmP~d~d~YvHRIGRTGR~Gn~G~atsf~ 441 (482)
T KOG0335|consen 368 HGDRTQIEREQALNDFRNGKAP--VLVATNVAARGLDIPNVKHVINYDMPADIDDYVHRIGRTGRVGNGGRATSFF 441 (482)
T ss_pred cchhhhhHHHHHHHHhhcCCcc--eEEEehhhhcCCCCCCCceeEEeecCcchhhHHHhccccccCCCCceeEEEe
Confidence 9999999999999999887777 8999999999999999999999999999999999999999999987766654
No 64
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=99.73 E-value=3e-16 Score=197.22 Aligned_cols=128 Identities=15% Similarity=0.171 Sum_probs=105.7
Q ss_pred hhhHHHHHHHHHHHHHHcCCeEEEEecchhHHHHHHHHHhhhcCCceEEEEeCCCCHHHHHHHHHHHhcCCCceEEEeec
Q 042857 1069 ASAKLTLLHSMLKVLYKEGHRVLIFSQMTKLLDILEDYLNIEFGPKTYERVDGSVSVGDRQAAITRFNQDKSRFVFLLST 1148 (1404)
Q Consensus 1069 ~SgKl~~L~kLL~kl~~~G~KVLIFSq~~~~LDiLed~L~~~f~g~~y~rLdGs~s~~eRq~~Id~Fn~~~s~~VfLLST 1148 (1404)
...|+.++.+.+..+...|..||||+......+.|...|... |+.+..++|.+...+|..+..+|+.+ -++++|
T Consensus 406 ~~~K~~ai~~~i~~~~~~~~pvLIft~s~~~se~ls~~L~~~--gi~~~~L~a~~~~~E~~ii~~ag~~g----~VlIAT 479 (762)
T TIGR03714 406 LPEKLMATLEDVKEYHETGQPVLLITGSVEMSEIYSELLLRE--GIPHNLLNAQNAAKEAQIIAEAGQKG----AVTVAT 479 (762)
T ss_pred HHHHHHHHHHHHHHHhhCCCCEEEEECcHHHHHHHHHHHHHC--CCCEEEecCCChHHHHHHHHHcCCCC----eEEEEc
Confidence 467999999999998899999999999999999999999976 89999999999987776655555332 378999
Q ss_pred cccccccccc---------CCCEEEEEcCCCCHhHHHHHHHhhhccCCCCcEEEEEEeeCCCHHHHHHH
Q 042857 1149 RSCGLGINLA---------TADTVIIYDSDFNPHADIQAMNRAHRIGQSKRLLVYRLVVRASVEERILQ 1208 (1404)
Q Consensus 1149 rAgG~GINL~---------~AdtVIi~DsdWNP~~d~QAigRahRiGQ~k~V~VYrLvt~~TvEE~Ilq 1208 (1404)
..+|+|+++. ..++||.|+++-+... .|+.||++|.|....... |++ .|+.++.
T Consensus 480 dmAgRGtDI~l~~~v~~~GGL~vIit~~~ps~rid-~qr~GRtGRqG~~G~s~~--~is---~eD~l~~ 542 (762)
T TIGR03714 480 SMAGRGTDIKLGKGVAELGGLAVIGTERMENSRVD-LQLRGRSGRQGDPGSSQF--FVS---LEDDLIK 542 (762)
T ss_pred cccccccCCCCCccccccCCeEEEEecCCCCcHHH-HHhhhcccCCCCceeEEE--EEc---cchhhhh
Confidence 9999999999 7899999999977654 999999999998766433 333 3555554
No 65
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=99.72 E-value=1.8e-15 Score=192.62 Aligned_cols=370 Identities=14% Similarity=0.093 Sum_probs=201.1
Q ss_pred CCCHHHHHHHHHHHHhhcc------CCcEEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEeCCC-ChHHHHHHHHHH
Q 042857 755 ALFPHQLEALNWLRKCWHK------SKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLS-TMPNWLAEFALW 827 (1404)
Q Consensus 755 ~L~pyQlegVnwL~~~~~~------~~~~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP~S-ll~nW~rEf~kw 827 (1404)
-.++||..+|+.++..+.+ .++++|.+.+|.|||++++.++..++... ...++|||||.. +..||..+|..+
T Consensus 238 ~~r~~Q~~av~~~~~~~~~~~~~~~~~~gli~~~TGsGKT~t~~~la~~l~~~~-~~~~vl~lvdR~~L~~Q~~~~f~~~ 316 (667)
T TIGR00348 238 YQRYMQYRAVKKIVESITRKTWGKDERGGLIWHTQGSGKTLTMLFAARKALELL-KNPKVFFVVDRRELDYQLMKEFQSL 316 (667)
T ss_pred ehHHHHHHHHHHHHHHHHhcccCCCCceeEEEEecCCCccHHHHHHHHHHHhhc-CCCeEEEEECcHHHHHHHHHHHHhh
Confidence 4789999999999887765 36899999999999999999888876433 345799999976 559999999998
Q ss_pred CCCCcEEEEecchhHHHHHHHhhhccCCCCccccccCCCCceEEEeeHHHHHhhh-ccccCC----CceEEEEccccccC
Q 042857 828 APNLNVVEYHGCAKARAIIRQYEWHASDPDNLNKKTSSYKFNVLLTTYEMILADS-SHLRGV----PWEVLVVDEGHRLK 902 (1404)
Q Consensus 828 ~P~l~Vvvy~G~~~~R~~ir~~E~~~~~~~~~~~~~~~~kfdVvITTYe~l~~d~-~~L~~i----~w~lVIVDEAHrlK 902 (1404)
.++.... .++ ........ ......|+|+|.+.+.... ..+... ...+||+|||||..
T Consensus 317 ~~~~~~~--~~s--~~~L~~~l--------------~~~~~~iivtTiQk~~~~~~~~~~~~~~~~~~~lvIvDEaHrs~ 378 (667)
T TIGR00348 317 QKDCAER--IES--IAELKRLL--------------EKDDGGIIITTIQKFDKKLKEEEEKFPVDRKEVVVIFDEAHRSQ 378 (667)
T ss_pred CCCCCcc--cCC--HHHHHHHH--------------hCCCCCEEEEEhHHhhhhHhhhhhccCCCCCCEEEEEEcCcccc
Confidence 7532111 111 11111111 1123579999999997521 112211 12389999999974
Q ss_pred CCccHHHHHH-hhcccccEEEEeccCCCCChHHHHHHhhhhCCCCCCChhHHHHHhccccchHHHHHHHHhhhhhhhhhh
Q 042857 903 NSGSKLFSLL-NSFSFQHRVLLTGTPLQNNIGEMYNLLNFLQPASFPSLSSFEEKFNDLTTTQKVEELKKLVAPHMLRRL 981 (1404)
Q Consensus 903 N~~Sk~~~~L-~~l~~~~rLLLTGTPlqNnl~EL~sLL~fL~P~~f~s~~~F~~~f~d~~~~~~i~~L~~lL~p~mLRR~ 981 (1404)
. ......+ ..+....+|+|||||+...-.+-+ ..|...|+.+.. .+-+..-
T Consensus 379 ~--~~~~~~l~~~~p~a~~lGfTaTP~~~~d~~t~--------------~~f~~~fg~~i~------------~Y~~~~A 430 (667)
T TIGR00348 379 Y--GELAKNLKKALKNASFFGFTGTPIFKKDRDTS--------------LTFAYVFGRYLH------------RYFITDA 430 (667)
T ss_pred c--hHHHHHHHhhCCCCcEEEEeCCCccccccccc--------------ccccCCCCCeEE------------EeeHHHH
Confidence 2 2344455 456778899999999754211100 111100111100 0111100
Q ss_pred HhhhhhcCCCceEEEEEec--CCHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCcH
Q 042857 982 KKDAMQNIPPKTERMVPVE--LSSIQAEYYRAMLTKNYQILRNIGKGVAQQSMLNIVMQLRKVCNHPYLIPGTEPDSGSV 1059 (1404)
Q Consensus 982 K~dV~~~LPpk~e~iV~V~--LS~~Qk~~Y~~il~~n~~~L~~~~kg~~~~sllnilm~LRK~cnHP~L~~~~e~~~~~~ 1059 (1404)
.+| .-+.|.....+.+. ++.. .....+...+..............+......+.....+|
T Consensus 431 I~d--G~~~~i~Y~~~~~~~~~~~~---~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~------------- 492 (667)
T TIGR00348 431 IRD--GLTVKIDYEDRLPEDHLDRK---KLDAFFDEIFELLPERIREITKESLKEKLQKTKKILFNE------------- 492 (667)
T ss_pred hhc--CCeeeEEEEecchhhccChH---HHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHhhhcCh-------------
Confidence 000 00111111111111 1111 111111111110000000000111111111111111100
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHH-HHcCCeEEEEecchhHHHHHHHHHhhhcCC---ceEEEEeCCCCHH---------
Q 042857 1060 EFLHEMRIKASAKLTLLHSMLKVL-YKEGHRVLIFSQMTKLLDILEDYLNIEFGP---KTYERVDGSVSVG--------- 1126 (1404)
Q Consensus 1060 e~l~~~~i~~SgKl~~L~kLL~kl-~~~G~KVLIFSq~~~~LDiLed~L~~~f~g---~~y~rLdGs~s~~--------- 1126 (1404)
.++....+ .+.+-.... ...+.|.+||+.....+..+.+.|...++. .....++|+....
T Consensus 493 -----~~~~~ia~--~i~~h~~~~~~~~~~kamvv~~sr~~a~~~~~~l~~~~~~~~~~~~vv~s~~~~~~~~~~~~~~~ 565 (667)
T TIGR00348 493 -----DRLESIAK--DIAEHYAKFKELFKFKAMVVAISRYACVEEKNALDEELNEKFEASAIVMTGKESDDAEIRDYNKH 565 (667)
T ss_pred -----HHHHHHHH--HHHHHHHHhhhcccCceeEEEecHHHHHHHHHHHHhhcccccCCeeEEecCCccchhHHHHHHHH
Confidence 00111111 111111111 123579999999998888887777654332 2445566654332
Q ss_pred ------------HHHHHHHHHhcCCCceEEEeecccccccccccCCCEEEEEcCCCCHhHHHHHHHhhhcc-CC-CCcEE
Q 042857 1127 ------------DRQAAITRFNQDKSRFVFLLSTRSCGLGINLATADTVIIYDSDFNPHADIQAMNRAHRI-GQ-SKRLL 1192 (1404)
Q Consensus 1127 ------------eRq~~Id~Fn~~~s~~VfLLSTrAgG~GINL~~AdtVIi~DsdWNP~~d~QAigRahRi-GQ-~k~V~ 1192 (1404)
....++++|..+ ...-+||+.....+|+|.+.++++++.-|--. +..+|++||+.|+ +- +....
T Consensus 566 ~~~~~~~~~~~~~~~~~~~~Fk~~-~~~~ilIVvdmllTGFDaP~l~tLyldKplk~-h~LlQai~R~nR~~~~~K~~g~ 643 (667)
T TIGR00348 566 IRTKFDKSDGFEIYYKDLERFKKE-ENPKLLIVVDMLLTGFDAPILNTLYLDKPLKY-HGLLQAIARTNRIDGKDKTFGL 643 (667)
T ss_pred hccccccchhhhHHHHHHHHhcCC-CCceEEEEEcccccccCCCccceEEEeccccc-cHHHHHHHHhccccCCCCCCEE
Confidence 234789999765 34457888899999999999999998887654 5689999999995 43 34466
Q ss_pred EEEEee
Q 042857 1193 VYRLVV 1198 (1404)
Q Consensus 1193 VYrLvt 1198 (1404)
|+.++-
T Consensus 644 IvDy~g 649 (667)
T TIGR00348 644 IVDYRG 649 (667)
T ss_pred EEECcC
Confidence 766654
No 66
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=99.72 E-value=1.3e-15 Score=193.19 Aligned_cols=131 Identities=16% Similarity=0.169 Sum_probs=109.4
Q ss_pred hhhhHHHHHHHHHHHHHHcCCeEEEEecchhHHHHHHHHHhhhcCCceEEEEeCCCCHHHHHHHHHHHhcCCCceEEEee
Q 042857 1068 KASAKLTLLHSMLKVLYKEGHRVLIFSQMTKLLDILEDYLNIEFGPKTYERVDGSVSVGDRQAAITRFNQDKSRFVFLLS 1147 (1404)
Q Consensus 1068 ~~SgKl~~L~kLL~kl~~~G~KVLIFSq~~~~LDiLed~L~~~f~g~~y~rLdGs~s~~eRq~~Id~Fn~~~s~~VfLLS 1147 (1404)
....|+.+|..++......|.++||||......+.|...|... |+++..|+|.+...++..+..+|..+ -++|+
T Consensus 409 ~~~~K~~al~~~i~~~~~~~~pvLIf~~t~~~se~l~~~L~~~--gi~~~~L~~~~~~~e~~~i~~ag~~g----~VlIA 482 (790)
T PRK09200 409 TLDEKYKAVIEEVKERHETGRPVLIGTGSIEQSETFSKLLDEA--GIPHNLLNAKNAAKEAQIIAEAGQKG----AVTVA 482 (790)
T ss_pred CHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHC--CCCEEEecCCccHHHHHHHHHcCCCC----eEEEE
Confidence 3467999999999888888999999999999999999999976 89999999998887777666665422 38899
Q ss_pred cccccccccc---cCCC-----EEEEEcCCCCHhHHHHHHHhhhccCCCCcEEEEEEeeCCCHHHHHHHH
Q 042857 1148 TRSCGLGINL---ATAD-----TVIIYDSDFNPHADIQAMNRAHRIGQSKRLLVYRLVVRASVEERILQL 1209 (1404)
Q Consensus 1148 TrAgG~GINL---~~Ad-----tVIi~DsdWNP~~d~QAigRahRiGQ~k~V~VYrLvt~~TvEE~Ilq~ 1209 (1404)
|..+|+|+|+ ..+. +||.||.+-|+..|.|+.||++|.|+...... |+ |.|+.++.+
T Consensus 483 TdmAgRG~DI~l~~~V~~~GGL~VI~~d~p~s~r~y~qr~GRtGR~G~~G~s~~--~i---s~eD~l~~~ 547 (790)
T PRK09200 483 TNMAGRGTDIKLGEGVHELGGLAVIGTERMESRRVDLQLRGRSGRQGDPGSSQF--FI---SLEDDLLKR 547 (790)
T ss_pred ccchhcCcCCCcccccccccCcEEEeccCCCCHHHHHHhhccccCCCCCeeEEE--EE---cchHHHHHh
Confidence 9999999999 4777 99999999999999999999999998765432 33 336666653
No 67
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.72 E-value=4.8e-16 Score=175.13 Aligned_cols=334 Identities=21% Similarity=0.240 Sum_probs=223.1
Q ss_pred CCCCHHHHHHHHHHHHhhccCCcEEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEeCCCCh-HHHHHHHHHHC--CC
Q 042857 754 GALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLSTM-PNWLAEFALWA--PN 830 (1404)
Q Consensus 754 ~~L~pyQlegVnwL~~~~~~~~~~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP~Sll-~nW~rEf~kw~--P~ 830 (1404)
.+..|.|..++-.++. |++||-+.-+|.|||.....-+..-+.+.+..--.||+.|+.-+ .|-.+.|.... -+
T Consensus 28 ~~pTpiQ~~cIpkILe----Grdcig~AkTGsGKT~AFaLPil~rLsedP~giFalvlTPTrELA~QiaEQF~alGk~l~ 103 (442)
T KOG0340|consen 28 KKPTPIQQACIPKILE----GRDCIGCAKTGSGKTAAFALPILNRLSEDPYGIFALVLTPTRELALQIAEQFIALGKLLN 103 (442)
T ss_pred CCCCchHhhhhHHHhc----ccccccccccCCCcchhhhHHHHHhhccCCCcceEEEecchHHHHHHHHHHHHHhccccc
Confidence 4578899999988877 99999999999999987776666666565555567999999877 56666666553 25
Q ss_pred CcEEEEecchhHHHHHHHhhhccCCCCccccccCCCCceEEEeeHHHHHhhhc------cccCCCceEEEEccccccCCC
Q 042857 831 LNVVEYHGCAKARAIIRQYEWHASDPDNLNKKTSSYKFNVLLTTYEMILADSS------HLRGVPWEVLVVDEGHRLKNS 904 (1404)
Q Consensus 831 l~Vvvy~G~~~~R~~ir~~E~~~~~~~~~~~~~~~~kfdVvITTYe~l~~d~~------~L~~i~w~lVIVDEAHrlKN~ 904 (1404)
+++.+++|..+--. ...++ ..+.|||++|++.+..... .+...+..++|+|||.++.+.
T Consensus 104 lK~~vivGG~d~i~--qa~~L-------------~~rPHvVvatPGRlad~l~sn~~~~~~~~~rlkflVlDEADrvL~~ 168 (442)
T KOG0340|consen 104 LKVSVIVGGTDMIM--QAAIL-------------SDRPHVVVATPGRLADHLSSNLGVCSWIFQRLKFLVLDEADRVLAG 168 (442)
T ss_pred ceEEEEEccHHHhh--hhhhc-------------ccCCCeEecCccccccccccCCccchhhhhceeeEEecchhhhhcc
Confidence 77888888654221 11111 2367999999998865321 112224568999999999764
Q ss_pred cc--HHHHHHhhcccc-cEEEEeccCCCCChHHHHHHhhhhCCCCCCChhHHHHHhccccchHHHHHHHHhhhhhhhhhh
Q 042857 905 GS--KLFSLLNSFSFQ-HRVLLTGTPLQNNIGEMYNLLNFLQPASFPSLSSFEEKFNDLTTTQKVEELKKLVAPHMLRRL 981 (1404)
Q Consensus 905 ~S--k~~~~L~~l~~~-~rLLLTGTPlqNnl~EL~sLL~fL~P~~f~s~~~F~~~f~d~~~~~~i~~L~~lL~p~mLRR~ 981 (1404)
.- .+......+... -.+++|+|- .+++.+++.. |..-+ |
T Consensus 169 ~f~d~L~~i~e~lP~~RQtLlfSATi-td~i~ql~~~-----~i~k~----~---------------------------- 210 (442)
T KOG0340|consen 169 CFPDILEGIEECLPKPRQTLLFSATI-TDTIKQLFGC-----PITKS----I---------------------------- 210 (442)
T ss_pred chhhHHhhhhccCCCccceEEEEeeh-hhHHHHhhcC-----Ccccc----c----------------------------
Confidence 21 122222333333 458888883 3333322210 00000 0
Q ss_pred HhhhhhcCCCceEEEEEe-cCCHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCcHH
Q 042857 982 KKDAMQNIPPKTERMVPV-ELSSIQAEYYRAMLTKNYQILRNIGKGVAQQSMLNIVMQLRKVCNHPYLIPGTEPDSGSVE 1060 (1404)
Q Consensus 982 K~dV~~~LPpk~e~iV~V-~LS~~Qk~~Y~~il~~n~~~L~~~~kg~~~~sllnilm~LRK~cnHP~L~~~~e~~~~~~e 1060 (1404)
-+.+.+ +-.+.-..+|+. |+
T Consensus 211 ------------a~~~e~~~~vstvetL~q~-----------------------------------yI------------ 231 (442)
T KOG0340|consen 211 ------------AFELEVIDGVSTVETLYQG-----------------------------------YI------------ 231 (442)
T ss_pred ------------ceEEeccCCCCchhhhhhh-----------------------------------ee------------
Confidence 000000 000000111110 00
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHH-cCCeEEEEecchhHHHHHHHHHhhhcCCceEEEEeCCCCHHHHHHHHHHHhcCC
Q 042857 1061 FLHEMRIKASAKLTLLHSMLKVLYK-EGHRVLIFSQMTKLLDILEDYLNIEFGPKTYERVDGSVSVGDRQAAITRFNQDK 1139 (1404)
Q Consensus 1061 ~l~~~~i~~SgKl~~L~kLL~kl~~-~G~KVLIFSq~~~~LDiLed~L~~~f~g~~y~rLdGs~s~~eRq~~Id~Fn~~~ 1139 (1404)
.+...+|-.+|..+|....+ ....++||+|.+....+|.-.|... ++.+..+|+.|++.+|-.++.+|+.+.
T Consensus 232 -----~~~~~vkdaYLv~~Lr~~~~~~~~simIFvnttr~cQ~l~~~l~~l--e~r~~~lHs~m~Q~eR~~aLsrFrs~~ 304 (442)
T KOG0340|consen 232 -----LVSIDVKDAYLVHLLRDFENKENGSIMIFVNTTRECQLLSMTLKNL--EVRVVSLHSQMPQKERLAALSRFRSNA 304 (442)
T ss_pred -----ecchhhhHHHHHHHHhhhhhccCceEEEEeehhHHHHHHHHHHhhh--ceeeeehhhcchHHHHHHHHHHHhhcC
Confidence 11234566677777777766 4668999999999999999999876 788999999999999999999998776
Q ss_pred CceEEEeecccccccccccCCCEEEEEcCCCCHhHHHHHHHhhhccCCCCcEEEEEEeeCCCHH--HHHHHHHHHHH
Q 042857 1140 SRFVFLLSTRSCGLGINLATADTVIIYDSDFNPHADIQAMNRAHRIGQSKRLLVYRLVVRASVE--ERILQLAKKKL 1214 (1404)
Q Consensus 1140 s~~VfLLSTrAgG~GINL~~AdtVIi~DsdWNP~~d~QAigRahRiGQ~k~V~VYrLvt~~TvE--E~Ilq~a~~Kl 1214 (1404)
-. +||+|.++++|+++++.+.||+||.|-.|..|++|.||..|.|.... -.-+++...|| ..|-+...+|+
T Consensus 305 ~~--iliaTDVAsRGLDIP~V~LVvN~diPr~P~~yiHRvGRtARAGR~G~--aiSivt~rDv~l~~aiE~~igkKl 377 (442)
T KOG0340|consen 305 AR--ILIATDVASRGLDIPTVELVVNHDIPRDPKDYIHRVGRTARAGRKGM--AISIVTQRDVELLQAIEEEIGKKL 377 (442)
T ss_pred cc--EEEEechhhcCCCCCceeEEEecCCCCCHHHHHHhhcchhcccCCcc--eEEEechhhHHHHHHHHHHHhccc
Confidence 66 89999999999999999999999999999999999999888887544 23345554443 23344444454
No 68
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=99.71 E-value=5.9e-16 Score=181.06 Aligned_cols=354 Identities=19% Similarity=0.235 Sum_probs=225.3
Q ss_pred hhhhhhccCCccCCCCCCCHHHHHHHHHHHHhhccCCcEEEEcCCCchHHHHHHHHHHHHHh--------hccCCCc-EE
Q 042857 739 SEIVALTEQPEELKGGALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYC--------EFKAKLP-CL 809 (1404)
Q Consensus 739 ~~~~~l~~qP~~l~g~~L~pyQlegVnwL~~~~~~~~~~ILADEMGLGKTiqaIa~L~~L~~--------~~~~~gP-~L 809 (1404)
.++..++..|.+. ...|.|..++--+++ +++.|+..|+|.|||...+.-|...+. +....|| .+
T Consensus 254 ~e~l~~I~~~~y~---eptpIqR~aipl~lQ----~rD~igvaETgsGktaaf~ipLl~~IsslP~~~~~en~~~gpyai 326 (673)
T KOG0333|consen 254 LELLSVIKKPGYK---EPTPIQRQAIPLGLQ----NRDPIGVAETGSGKTAAFLIPLLIWISSLPPMARLENNIEGPYAI 326 (673)
T ss_pred HHHHHHHHhcCCC---CCchHHHhhccchhc----cCCeeeEEeccCCccccchhhHHHHHHcCCCcchhhhcccCceee
Confidence 3444456666664 367889988875544 899999999999999655443332221 1223344 68
Q ss_pred EEeCCCCh-HHHHHHHHHHCC--CCcEEEEecchhHHHHHHHhhhccCCCCccccccCCCCceEEEeeHHHHHhhh--cc
Q 042857 810 VLVPLSTM-PNWLAEFALWAP--NLNVVEYHGCAKARAIIRQYEWHASDPDNLNKKTSSYKFNVLLTTYEMILADS--SH 884 (1404)
Q Consensus 810 IVvP~Sll-~nW~rEf~kw~P--~l~Vvvy~G~~~~R~~ir~~E~~~~~~~~~~~~~~~~kfdVvITTYe~l~~d~--~~ 884 (1404)
|++|+..| .|-+.|-.+|+- .++++...|...-..+ .| .-...++|+|.|+..|..-. .+
T Consensus 327 ilaptReLaqqIeeEt~kf~~~lg~r~vsvigg~s~EEq----~f-----------qls~gceiviatPgrLid~Lenr~ 391 (673)
T KOG0333|consen 327 ILAPTRELAQQIEEETNKFGKPLGIRTVSVIGGLSFEEQ----GF-----------QLSMGCEIVIATPGRLIDSLENRY 391 (673)
T ss_pred eechHHHHHHHHHHHHHHhcccccceEEEEecccchhhh----hh-----------hhhccceeeecCchHHHHHHHHHH
Confidence 89999877 567777777752 4677777775432211 01 11246789999999887643 34
Q ss_pred ccCCCceEEEEccccccCCCc--cHHHHHHhhcccccEEEEeccCCCCChHHHHHHhhhhCCCCCCChhHHHHHhccccc
Q 042857 885 LRGVPWEVLVVDEGHRLKNSG--SKLFSLLNSFSFQHRVLLTGTPLQNNIGEMYNLLNFLQPASFPSLSSFEEKFNDLTT 962 (1404)
Q Consensus 885 L~~i~w~lVIVDEAHrlKN~~--Sk~~~~L~~l~~~~rLLLTGTPlqNnl~EL~sLL~fL~P~~f~s~~~F~~~f~d~~~ 962 (1404)
|-.-+..+||+|||.++-..+ ......|..+. ..|- .| +.+++.
T Consensus 392 lvl~qctyvvldeadrmiDmgfE~dv~~iL~~mP-----------ssn~-----------k~----~tde~~-------- 437 (673)
T KOG0333|consen 392 LVLNQCTYVVLDEADRMIDMGFEPDVQKILEQMP-----------SSNA-----------KP----DTDEKE-------- 437 (673)
T ss_pred HHhccCceEeccchhhhhcccccHHHHHHHHhCC-----------cccc-----------CC----Cccchh--------
Confidence 444567899999999986422 22223322221 1110 00 001111
Q ss_pred hHHHHHHHHhhhhhhhhhhHhhhhhcCCCceEEEEEecCCHHHHHHHHHHHHHHHHH-HHhhccchhhHHHHHHHHHHHH
Q 042857 963 TQKVEELKKLVAPHMLRRLKKDAMQNIPPKTERMVPVELSSIQAEYYRAMLTKNYQI-LRNIGKGVAQQSMLNIVMQLRK 1041 (1404)
Q Consensus 963 ~~~i~~L~~lL~p~mLRR~K~dV~~~LPpk~e~iV~V~LS~~Qk~~Y~~il~~n~~~-L~~~~kg~~~~sllnilm~LRK 1041 (1404)
....+.+.+ --. + --....+..+.|+|.-..+.+.++.+-.-. +...++
T Consensus 438 --~~~~~~~~~---~~~--k-------~yrqT~mftatm~p~verlar~ylr~pv~vtig~~gk---------------- 487 (673)
T KOG0333|consen 438 --GEERVRKNF---SSS--K-------KYRQTVMFTATMPPAVERLARSYLRRPVVVTIGSAGK---------------- 487 (673)
T ss_pred --hHHHHHhhc---ccc--c-------ceeEEEEEecCCChHHHHHHHHHhhCCeEEEeccCCC----------------
Confidence 111111111 000 0 001233456667765554444433221000 000000
Q ss_pred HhCCCCCCCCCCCCCCcHHHHHHHHHhhhhHHHHHHHHHHHHHHcCCeEEEEecchhHHHHHHHHHhhhcCCceEEEEeC
Q 042857 1042 VCNHPYLIPGTEPDSGSVEFLHEMRIKASAKLTLLHSMLKVLYKEGHRVLIFSQMTKLLDILEDYLNIEFGPKTYERVDG 1121 (1404)
Q Consensus 1042 ~cnHP~L~~~~e~~~~~~e~l~~~~i~~SgKl~~L~kLL~kl~~~G~KVLIFSq~~~~LDiLed~L~~~f~g~~y~rLdG 1121 (1404)
++|.+-.-. ..+..+.|...|.++|... ....+|||.+....+|.|.+.|... |+.+.++||
T Consensus 488 --~~~rveQ~v------------~m~~ed~k~kkL~eil~~~--~~ppiIIFvN~kk~~d~lAk~LeK~--g~~~~tlHg 549 (673)
T KOG0333|consen 488 --PTPRVEQKV------------EMVSEDEKRKKLIEILESN--FDPPIIIFVNTKKGADALAKILEKA--GYKVTTLHG 549 (673)
T ss_pred --CccchheEE------------EEecchHHHHHHHHHHHhC--CCCCEEEEEechhhHHHHHHHHhhc--cceEEEeeC
Confidence 011110000 0134567888888888775 4679999999999999999999987 899999999
Q ss_pred CCCHHHHHHHHHHHhcCCCceEEEeecccccccccccCCCEEEEEcCCCCHhHHHHHHHhhhccCCCCcEEEEEEeeCC
Q 042857 1122 SVSVGDRQAAITRFNQDKSRFVFLLSTRSCGLGINLATADTVIIYDSDFNPHADIQAMNRAHRIGQSKRLLVYRLVVRA 1200 (1404)
Q Consensus 1122 s~s~~eRq~~Id~Fn~~~s~~VfLLSTrAgG~GINL~~AdtVIi~DsdWNP~~d~QAigRahRiGQ~k~V~VYrLvt~~ 1200 (1404)
+-++++|..++..|+++... +|++|.++|.||+++...+||.||..-+-..|.++|||.+|.|+...+.- |+|..
T Consensus 550 ~k~qeQRe~aL~~fr~~t~d--IlVaTDvAgRGIDIpnVSlVinydmaksieDYtHRIGRTgRAGk~GtaiS--flt~~ 624 (673)
T KOG0333|consen 550 GKSQEQRENALADFREGTGD--ILVATDVAGRGIDIPNVSLVINYDMAKSIEDYTHRIGRTGRAGKSGTAIS--FLTPA 624 (673)
T ss_pred CccHHHHHHHHHHHHhcCCC--EEEEecccccCCCCCccceeeecchhhhHHHHHHHhccccccccCceeEE--Eeccc
Confidence 99999999999999987766 89999999999999999999999999999999999999999999776543 44543
No 69
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=99.71 E-value=2.1e-16 Score=184.47 Aligned_cols=329 Identities=20% Similarity=0.281 Sum_probs=215.7
Q ss_pred CCCHHHHHHHHHHHHhhccCCcEEEEcCCCchHHHHHHHHHHHHHhhcc----CCCcEEEEeCCCCh-HHHHHHHH---H
Q 042857 755 ALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFK----AKLPCLVLVPLSTM-PNWLAEFA---L 826 (1404)
Q Consensus 755 ~L~pyQlegVnwL~~~~~~~~~~ILADEMGLGKTiqaIa~L~~L~~~~~----~~gP~LIVvP~Sll-~nW~rEf~---k 826 (1404)
.|.+-|...+.-++. +.+++.+.-+|.|||+..+..+..+....+ ..--+|||||+..+ .|-..|.+ +
T Consensus 104 ~MT~VQ~~ti~pll~----gkDvl~~AKTGtGKTlAFLiPaie~l~k~~~~~r~~~~vlIi~PTRELA~Q~~~eak~Ll~ 179 (543)
T KOG0342|consen 104 TMTPVQQKTIPPLLE----GKDVLAAAKTGTGKTLAFLLPAIELLRKLKFKPRNGTGVLIICPTRELAMQIFAEAKELLK 179 (543)
T ss_pred chhHHHHhhcCccCC----CccceeeeccCCCceeeehhHHHHHHHhcccCCCCCeeEEEecccHHHHHHHHHHHHHHHh
Confidence 577888888776654 789999999999999987766555443322 12237999999877 45555554 4
Q ss_pred HCCCCcEEEEecchhHHHHHHHhhhccCCCCccccccCCCCceEEEeeHHHHHhhhccccC---CCceEEEEccccccCC
Q 042857 827 WAPNLNVVEYHGCAKARAIIRQYEWHASDPDNLNKKTSSYKFNVLLTTYEMILADSSHLRG---VPWEVLVVDEGHRLKN 903 (1404)
Q Consensus 827 w~P~l~Vvvy~G~~~~R~~ir~~E~~~~~~~~~~~~~~~~kfdVvITTYe~l~~d~~~L~~---i~w~lVIVDEAHrlKN 903 (1404)
+.+...|.+..|+..-+...... . ...+++|.|+..+......-.. -.-.++|+|||.|+-.
T Consensus 180 ~h~~~~v~~viGG~~~~~e~~kl--------------~-k~~niliATPGRLlDHlqNt~~f~~r~~k~lvlDEADrlLd 244 (543)
T KOG0342|consen 180 YHESITVGIVIGGNNFSVEADKL--------------V-KGCNILIATPGRLLDHLQNTSGFLFRNLKCLVLDEADRLLD 244 (543)
T ss_pred hCCCcceEEEeCCccchHHHHHh--------------h-ccccEEEeCCchHHhHhhcCCcchhhccceeEeecchhhhh
Confidence 55677787777776655433332 1 2678999999999876432211 1236899999999864
Q ss_pred Cc--cHHHHHHhhcccc-cEEEEeccCCCCChHHHHHHhhhhCCCCCCChhHHHHHhccccchHHHHHHHHhhhhhhhhh
Q 042857 904 SG--SKLFSLLNSFSFQ-HRVLLTGTPLQNNIGEMYNLLNFLQPASFPSLSSFEEKFNDLTTTQKVEELKKLVAPHMLRR 980 (1404)
Q Consensus 904 ~~--Sk~~~~L~~l~~~-~rLLLTGTPlqNnl~EL~sLL~fL~P~~f~s~~~F~~~f~d~~~~~~i~~L~~lL~p~mLRR 980 (1404)
.+ --+-+.+..+... ..+|+|||-
T Consensus 245 ~GF~~di~~Ii~~lpk~rqt~LFSAT~----------------------------------------------------- 271 (543)
T KOG0342|consen 245 IGFEEDVEQIIKILPKQRQTLLFSATQ----------------------------------------------------- 271 (543)
T ss_pred cccHHHHHHHHHhccccceeeEeeCCC-----------------------------------------------------
Confidence 33 2334444444422 336677763
Q ss_pred hHhhhhhcCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCcHH
Q 042857 981 LKKDAMQNIPPKTERMVPVELSSIQAEYYRAMLTKNYQILRNIGKGVAQQSMLNIVMQLRKVCNHPYLIPGTEPDSGSVE 1060 (1404)
Q Consensus 981 ~K~dV~~~LPpk~e~iV~V~LS~~Qk~~Y~~il~~n~~~L~~~~kg~~~~sllnilm~LRK~cnHP~L~~~~e~~~~~~e 1060 (1404)
++.-+++.+-++.+....+.-...+.. .- -..+.| -|++
T Consensus 272 ---------------------~~kV~~l~~~~L~~d~~~v~~~d~~~~--~T---he~l~Q----gyvv----------- 310 (543)
T KOG0342|consen 272 ---------------------PSKVKDLARGALKRDPVFVNVDDGGER--ET---HERLEQ----GYVV----------- 310 (543)
T ss_pred ---------------------cHHHHHHHHHhhcCCceEeecCCCCCc--ch---hhcccc----eEEe-----------
Confidence 111111111111110000000000000 00 000000 0111
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHcCCeEEEEecchhHHHHHHHHHhhhcCCceEEEEeCCCCHHHHHHHHHHHhcCCC
Q 042857 1061 FLHEMRIKASAKLTLLHSMLKVLYKEGHRVLIFSQMTKLLDILEDYLNIEFGPKTYERVDGSVSVGDRQAAITRFNQDKS 1140 (1404)
Q Consensus 1061 ~l~~~~i~~SgKl~~L~kLL~kl~~~G~KVLIFSq~~~~LDiLed~L~~~f~g~~y~rLdGs~s~~eRq~~Id~Fn~~~s 1140 (1404)
.....++.+|..+|++.... .||+||+....+..++.+.|... .+.+..|||..++..|.....+|....+
T Consensus 311 ------~~~~~~f~ll~~~LKk~~~~-~KiiVF~sT~~~vk~~~~lL~~~--dlpv~eiHgk~~Q~kRT~~~~~F~kaes 381 (543)
T KOG0342|consen 311 ------APSDSRFSLLYTFLKKNIKR-YKIIVFFSTCMSVKFHAELLNYI--DLPVLEIHGKQKQNKRTSTFFEFCKAES 381 (543)
T ss_pred ------ccccchHHHHHHHHHHhcCC-ceEEEEechhhHHHHHHHHHhhc--CCchhhhhcCCcccccchHHHHHhhccc
Confidence 11234467777888776544 89999999999999999999854 7889999999999999999999998877
Q ss_pred ceEEEeecccccccccccCCCEEEEEcCCCCHhHHHHHHHhhhccCCCCcEEEEEEeeCCCHHHHHHHHHH
Q 042857 1141 RFVFLLSTRSCGLGINLATADTVIIYDSDFNPHADIQAMNRAHRIGQSKRLLVYRLVVRASVEERILQLAK 1211 (1404)
Q Consensus 1141 ~~VfLLSTrAgG~GINL~~AdtVIi~DsdWNP~~d~QAigRahRiGQ~k~V~VYrLvt~~TvEE~Ilq~a~ 1211 (1404)
. ||++|.++++|+|.+..|.||-||+|-+|.+|++|+||.+|-|-+.. -+-|+++ -|...+.-.+
T Consensus 382 g--IL~cTDVaARGlD~P~V~~VvQ~~~P~d~~~YIHRvGRTaR~gk~G~--alL~l~p--~El~Flr~LK 446 (543)
T KOG0342|consen 382 G--ILVCTDVAARGLDIPDVDWVVQYDPPSDPEQYIHRVGRTAREGKEGK--ALLLLAP--WELGFLRYLK 446 (543)
T ss_pred c--eEEecchhhccCCCCCceEEEEeCCCCCHHHHHHHhccccccCCCce--EEEEeCh--hHHHHHHHHh
Confidence 7 89999999999999999999999999999999999999999776544 3334444 2555555444
No 70
>PHA02653 RNA helicase NPH-II; Provisional
Probab=99.71 E-value=1.5e-15 Score=191.46 Aligned_cols=336 Identities=15% Similarity=0.176 Sum_probs=205.2
Q ss_pred hhccCCccCCCCCCCHHHHHHHHHHHHhhccCCcEEEEcCCCchHHHHHHHHHHH----------HH--hhccCCCcEEE
Q 042857 743 ALTEQPEELKGGALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISS----------LY--CEFKAKLPCLV 810 (1404)
Q Consensus 743 ~l~~qP~~l~g~~L~pyQlegVnwL~~~~~~~~~~ILADEMGLGKTiqaIa~L~~----------L~--~~~~~~gP~LI 810 (1404)
.+...|..+....|++.|.+.=..++..+..++..|+..++|.|||.|.=-++.. +. ......++++|
T Consensus 148 ~~~~n~~~~~~~~l~~~~~~iQ~qil~~i~~gkdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~~~~~~~~ilv 227 (675)
T PHA02653 148 GILGNPEPFSKIPLASLQPDVQLKIFEAWISRKPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKIDPNFIERPIVL 227 (675)
T ss_pred cccCCCCccccccCCchhHHHHHHHHHHHHhCCCEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhcccccCCcEEEE
Confidence 3455555566678999999998889999999999999999999999885322221 11 00123458999
Q ss_pred EeCCCCh-HHHHHHHHHHC-----CCCcEEEEecchhHHHHHHHhhhccCCCCccccccCCCCceEEEeeHHHHHhhhcc
Q 042857 811 LVPLSTM-PNWLAEFALWA-----PNLNVVEYHGCAKARAIIRQYEWHASDPDNLNKKTSSYKFNVLLTTYEMILADSSH 884 (1404)
Q Consensus 811 VvP~Sll-~nW~rEf~kw~-----P~l~Vvvy~G~~~~R~~ir~~E~~~~~~~~~~~~~~~~kfdVvITTYe~l~~d~~~ 884 (1404)
++|...+ .|...++.... +...+.+.+|+..... + . ......+++|.|..... ..
T Consensus 228 t~PrreLa~qi~~~i~~~vg~~~~~g~~v~v~~Gg~~~~~-~-~--------------t~~k~~~Ilv~T~~L~l---~~ 288 (675)
T PHA02653 228 SLPRVALVRLHSITLLKSLGFDEIDGSPISLKYGSIPDEL-I-N--------------TNPKPYGLVFSTHKLTL---NK 288 (675)
T ss_pred ECcHHHHHHHHHHHHHHHhCccccCCceEEEEECCcchHH-h-h--------------cccCCCCEEEEeCcccc---cc
Confidence 9998655 57777776532 3455666666554211 0 0 01114578888854311 12
Q ss_pred ccCCCceEEEEccccccCCCccHHHHHHhhccc--ccEEEEeccCCCCChHHHHHHhhhhCCCCCCChhHHHHHhccccc
Q 042857 885 LRGVPWEVLVVDEGHRLKNSGSKLFSLLNSFSF--QHRVLLTGTPLQNNIGEMYNLLNFLQPASFPSLSSFEEKFNDLTT 962 (1404)
Q Consensus 885 L~~i~w~lVIVDEAHrlKN~~Sk~~~~L~~l~~--~~rLLLTGTPlqNnl~EL~sLL~fL~P~~f~s~~~F~~~f~d~~~ 962 (1404)
| -.+.+|||||||.+-..+..+...++.+.. +..++||||+-. .+..+ ..|+..
T Consensus 289 L--~~v~~VVIDEaHEr~~~~DllL~llk~~~~~~rq~ILmSATl~~-dv~~l---~~~~~~------------------ 344 (675)
T PHA02653 289 L--FDYGTVIIDEVHEHDQIGDIIIAVARKHIDKIRSLFLMTATLED-DRDRI---KEFFPN------------------ 344 (675)
T ss_pred c--ccCCEEEccccccCccchhHHHHHHHHhhhhcCEEEEEccCCcH-hHHHH---HHHhcC------------------
Confidence 3 346799999999986555444444444322 246899999721 12221 122210
Q ss_pred hHHHHHHHHhhhhhhhhhhHhhhhhcCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHH
Q 042857 963 TQKVEELKKLVAPHMLRRLKKDAMQNIPPKTERMVPVELSSIQAEYYRAMLTKNYQILRNIGKGVAQQSMLNIVMQLRKV 1042 (1404)
Q Consensus 963 ~~~i~~L~~lL~p~mLRR~K~dV~~~LPpk~e~iV~V~LS~~Qk~~Y~~il~~n~~~L~~~~kg~~~~sllnilm~LRK~ 1042 (1404)
|..+. .. ...+.|...+.+.....+.+...|-.
T Consensus 345 ------------p~~I~-I~---grt~~pV~~~yi~~~~~~~~~~~y~~------------------------------- 377 (675)
T PHA02653 345 ------------PAFVH-IP---GGTLFPISEVYVKNKYNPKNKRAYIE------------------------------- 377 (675)
T ss_pred ------------CcEEE-eC---CCcCCCeEEEEeecCcccccchhhhH-------------------------------
Confidence 00000 00 00011222222211111111111100
Q ss_pred hCCCCCCCCCCCCCCcHHHHHHHHHhhhhHHHHHHHHHHHH-HHcCCeEEEEecchhHHHHHHHHHhhhcCCceEEEEeC
Q 042857 1043 CNHPYLIPGTEPDSGSVEFLHEMRIKASAKLTLLHSMLKVL-YKEGHRVLIFSQMTKLLDILEDYLNIEFGPKTYERVDG 1121 (1404)
Q Consensus 1043 cnHP~L~~~~e~~~~~~e~l~~~~i~~SgKl~~L~kLL~kl-~~~G~KVLIFSq~~~~LDiLed~L~~~f~g~~y~rLdG 1121 (1404)
..|..++ ..+... ...+..+|||+.....++.+...|....+++.+..|||
T Consensus 378 ---------------------------~~k~~~l-~~L~~~~~~~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~v~~LHG 429 (675)
T PHA02653 378 ---------------------------EEKKNIV-TALKKYTPPKGSSGIVFVASVSQCEEYKKYLEKRLPIYDFYIIHG 429 (675)
T ss_pred ---------------------------HHHHHHH-HHHHHhhcccCCcEEEEECcHHHHHHHHHHHHhhcCCceEEeccC
Confidence 0011111 111111 12456899999999999999999987655688999999
Q ss_pred CCCHHHHHHHHHHHhcCCCceEEEeecccccccccccCCCEEEEEc----CC--------CCHhHHHHHHHhhhccCCCC
Q 042857 1122 SVSVGDRQAAITRFNQDKSRFVFLLSTRSCGLGINLATADTVIIYD----SD--------FNPHADIQAMNRAHRIGQSK 1189 (1404)
Q Consensus 1122 s~s~~eRq~~Id~Fn~~~s~~VfLLSTrAgG~GINL~~AdtVIi~D----sd--------WNP~~d~QAigRahRiGQ~k 1189 (1404)
++++. ++++++|... ...-+|++|..+++||++..+++||.++ |. .+...+.||.||++|. +
T Consensus 430 ~Lsq~--eq~l~~ff~~-gk~kILVATdIAERGIDIp~V~~VID~G~~k~p~~~~g~~~~iSkasa~QRaGRAGR~---~ 503 (675)
T PHA02653 430 KVPNI--DEILEKVYSS-KNPSIIISTPYLESSVTIRNATHVYDTGRVYVPEPFGGKEMFISKSMRTQRKGRVGRV---S 503 (675)
T ss_pred CcCHH--HHHHHHHhcc-CceeEEeccChhhccccccCeeEEEECCCccCCCcccCcccccCHHHHHHhccCcCCC---C
Confidence 99964 5677787422 3345899999999999999999999997 21 2677899999999998 3
Q ss_pred cEEEEEEeeCCCH
Q 042857 1190 RLLVYRLVVRASV 1202 (1404)
Q Consensus 1190 ~V~VYrLvt~~Tv 1202 (1404)
+-.+|+|+++...
T Consensus 504 ~G~c~rLyt~~~~ 516 (675)
T PHA02653 504 PGTYVYFYDLDLL 516 (675)
T ss_pred CCeEEEEECHHHh
Confidence 5678999988764
No 71
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=99.70 E-value=9.9e-16 Score=190.62 Aligned_cols=130 Identities=21% Similarity=0.264 Sum_probs=106.8
Q ss_pred hhhHHHHHHHHHHHHHHcCCeEEEEecchhHHHHHHHHHhhhcCCceEEEEeCCCCHHHHHHHHHHHhcCCCceEEEeec
Q 042857 1069 ASAKLTLLHSMLKVLYKEGHRVLIFSQMTKLLDILEDYLNIEFGPKTYERVDGSVSVGDRQAAITRFNQDKSRFVFLLST 1148 (1404)
Q Consensus 1069 ~SgKl~~L~kLL~kl~~~G~KVLIFSq~~~~LDiLed~L~~~f~g~~y~rLdGs~s~~eRq~~Id~Fn~~~s~~VfLLST 1148 (1404)
...|+..|.+++..+...|..||||+......+.|...|... |+.+..|+|... +|+..+..|...... ++|+|
T Consensus 455 ~~~K~~aL~~~i~~~~~~~~pvLIft~t~~~se~L~~~L~~~--gi~~~~Lhg~~~--~rE~~ii~~ag~~g~--VlVAT 528 (656)
T PRK12898 455 AAAKWAAVAARVRELHAQGRPVLVGTRSVAASERLSALLREA--GLPHQVLNAKQD--AEEAAIVARAGQRGR--ITVAT 528 (656)
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHC--CCCEEEeeCCcH--HHHHHHHHHcCCCCc--EEEEc
Confidence 457999999999988888899999999999999999999976 899999999854 666666666533333 88999
Q ss_pred cccccccccc---CCC-----EEEEEcCCCCHhHHHHHHHhhhccCCCCcEEEEEEeeCCCHHHHHHHH
Q 042857 1149 RSCGLGINLA---TAD-----TVIIYDSDFNPHADIQAMNRAHRIGQSKRLLVYRLVVRASVEERILQL 1209 (1404)
Q Consensus 1149 rAgG~GINL~---~Ad-----tVIi~DsdWNP~~d~QAigRahRiGQ~k~V~VYrLvt~~TvEE~Ilq~ 1209 (1404)
..+|+|+|+. .+. +||.||.+-|+..|.|++||++|.|....+.. |+ |.|+.++.+
T Consensus 529 dmAgRGtDI~l~~~V~~~GGLhVI~~d~P~s~r~y~hr~GRTGRqG~~G~s~~--~i---s~eD~l~~~ 592 (656)
T PRK12898 529 NMAGRGTDIKLEPGVAARGGLHVILTERHDSARIDRQLAGRCGRQGDPGSYEA--IL---SLEDDLLQS 592 (656)
T ss_pred cchhcccCcCCccchhhcCCCEEEEcCCCCCHHHHHHhcccccCCCCCeEEEE--Ee---chhHHHHHh
Confidence 9999999998 443 99999999999999999999999998655432 33 346666654
No 72
>PRK05580 primosome assembly protein PriA; Validated
Probab=99.70 E-value=6.7e-15 Score=187.64 Aligned_cols=321 Identities=21% Similarity=0.275 Sum_probs=201.4
Q ss_pred CCCCHHHHHHHHHHHHhhccCCcEEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEeCCC-ChHHHHHHHHHHCCCCc
Q 042857 754 GALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLS-TMPNWLAEFALWAPNLN 832 (1404)
Q Consensus 754 ~~L~pyQlegVnwL~~~~~~~~~~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP~S-ll~nW~rEf~kw~P~l~ 832 (1404)
..|.++|.++++.+...+ .+...+|...+|.|||...+.++...+.. .+.+||++|.. +..||.+.|..++ +..
T Consensus 143 ~~Lt~~Q~~ai~~i~~~~-~~~~~Ll~~~TGSGKT~v~l~~i~~~l~~---g~~vLvLvPt~~L~~Q~~~~l~~~f-g~~ 217 (679)
T PRK05580 143 PTLNPEQAAAVEAIRAAA-GFSPFLLDGVTGSGKTEVYLQAIAEVLAQ---GKQALVLVPEIALTPQMLARFRARF-GAP 217 (679)
T ss_pred CCCCHHHHHHHHHHHhcc-CCCcEEEECCCCChHHHHHHHHHHHHHHc---CCeEEEEeCcHHHHHHHHHHHHHHh-CCC
Confidence 469999999999987754 45678999999999999988777665543 34699999986 4589999999888 468
Q ss_pred EEEEecchhHHHHHHHhhhccCCCCccccccCCCCceEEEeeHHHHHhhhccccCCCceEEEEccccccCC--CccHHH-
Q 042857 833 VVEYHGCAKARAIIRQYEWHASDPDNLNKKTSSYKFNVLLTTYEMILADSSHLRGVPWEVLVVDEGHRLKN--SGSKLF- 909 (1404)
Q Consensus 833 Vvvy~G~~~~R~~ir~~E~~~~~~~~~~~~~~~~kfdVvITTYe~l~~d~~~L~~i~w~lVIVDEAHrlKN--~~Sk~~- 909 (1404)
+.+++|..........+. .......+|||+|+..+.. .--++++|||||+|...- .....+
T Consensus 218 v~~~~s~~s~~~r~~~~~-----------~~~~g~~~IVVgTrsal~~-----p~~~l~liVvDEeh~~s~~~~~~p~y~ 281 (679)
T PRK05580 218 VAVLHSGLSDGERLDEWR-----------KAKRGEAKVVIGARSALFL-----PFKNLGLIIVDEEHDSSYKQQEGPRYH 281 (679)
T ss_pred EEEEECCCCHHHHHHHHH-----------HHHcCCCCEEEeccHHhcc-----cccCCCEEEEECCCccccccCcCCCCc
Confidence 888988754433222221 0112356899999877642 223568999999998632 121111
Q ss_pred ----HHH-hhcccccEEEEeccCCCCChHHHHHHhhhhCCCCCCChhHHHHHhccccchHHHHHHHHhhhhhhhhhhHhh
Q 042857 910 ----SLL-NSFSFQHRVLLTGTPLQNNIGEMYNLLNFLQPASFPSLSSFEEKFNDLTTTQKVEELKKLVAPHMLRRLKKD 984 (1404)
Q Consensus 910 ----~~L-~~l~~~~rLLLTGTPlqNnl~EL~sLL~fL~P~~f~s~~~F~~~f~d~~~~~~i~~L~~lL~p~mLRR~K~d 984 (1404)
..+ ........+++||||.... ++... .+. |. +-++...
T Consensus 282 ~r~va~~ra~~~~~~~il~SATps~~s---~~~~~----~g~----------~~-------------------~~~l~~r 325 (679)
T PRK05580 282 ARDLAVVRAKLENIPVVLGSATPSLES---LANAQ----QGR----------YR-------------------LLRLTKR 325 (679)
T ss_pred HHHHHHHHhhccCCCEEEEcCCCCHHH---HHHHh----ccc----------ee-------------------EEEeccc
Confidence 111 2223446788999993221 11110 000 00 0000000
Q ss_pred hh-hcCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCcHHHHH
Q 042857 985 AM-QNIPPKTERMVPVELSSIQAEYYRAMLTKNYQILRNIGKGVAQQSMLNIVMQLRKVCNHPYLIPGTEPDSGSVEFLH 1063 (1404)
Q Consensus 985 V~-~~LPpk~e~iV~V~LS~~Qk~~Y~~il~~n~~~L~~~~kg~~~~sllnilm~LRK~cnHP~L~~~~e~~~~~~e~l~ 1063 (1404)
.. ..+| .+..+.|....+. +.+.. +
T Consensus 326 ~~~~~~p----~v~~id~~~~~~~----------------~~~~~---l------------------------------- 351 (679)
T PRK05580 326 AGGARLP----EVEIIDMRELLRG----------------ENGSF---L------------------------------- 351 (679)
T ss_pred cccCCCC----eEEEEechhhhhh----------------cccCC---C-------------------------------
Confidence 00 0122 1222333221000 00000 0
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHcCCeEEEEec------------------------------------------------
Q 042857 1064 EMRIKASAKLTLLHSMLKVLYKEGHRVLIFSQ------------------------------------------------ 1095 (1404)
Q Consensus 1064 ~~~i~~SgKl~~L~kLL~kl~~~G~KVLIFSq------------------------------------------------ 1095 (1404)
| ..|.+.+.+..+.|+++|||.+
T Consensus 352 ------s---~~l~~~i~~~l~~g~qvll~~nrrGy~~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~ 422 (679)
T PRK05580 352 ------S---PPLLEAIKQRLERGEQVLLFLNRRGYAPFLLCRDCGWVAECPHCDASLTLHRFQRRLRCHHCGYQEPIPK 422 (679)
T ss_pred ------C---HHHHHHHHHHHHcCCeEEEEEcCCCCCCceEhhhCcCccCCCCCCCceeEECCCCeEECCCCcCCCCCCC
Confidence 0 0112222222333444444432
Q ss_pred ------------chhHHHHHHHHHhhhcCCceEEEEeCCCCH--HHHHHHHHHHhcCCCceEEEeecccccccccccCCC
Q 042857 1096 ------------MTKLLDILEDYLNIEFGPKTYERVDGSVSV--GDRQAAITRFNQDKSRFVFLLSTRSCGLGINLATAD 1161 (1404)
Q Consensus 1096 ------------~~~~LDiLed~L~~~f~g~~y~rLdGs~s~--~eRq~~Id~Fn~~~s~~VfLLSTrAgG~GINL~~Ad 1161 (1404)
+..-.+.+++.|...|++..+.++||.+.. .+++++++.|.+++.. +|++|.....|+|++.++
T Consensus 423 ~Cp~Cg~~~l~~~g~G~e~~~e~l~~~fp~~~v~~~~~d~~~~~~~~~~~l~~f~~g~~~--ILVgT~~iakG~d~p~v~ 500 (679)
T PRK05580 423 ACPECGSTDLVPVGPGTERLEEELAELFPEARILRIDRDTTRRKGALEQLLAQFARGEAD--ILIGTQMLAKGHDFPNVT 500 (679)
T ss_pred CCCCCcCCeeEEeeccHHHHHHHHHHhCCCCcEEEEeccccccchhHHHHHHHHhcCCCC--EEEEChhhccCCCCCCcC
Confidence 233567889999988999999999999864 6789999999876655 889999999999999999
Q ss_pred EEEEEcCC---CCH---------hHHHHHHHhhhccCCCCcEEEEEE
Q 042857 1162 TVIIYDSD---FNP---------HADIQAMNRAHRIGQSKRLLVYRL 1196 (1404)
Q Consensus 1162 tVIi~Dsd---WNP---------~~d~QAigRahRiGQ~k~V~VYrL 1196 (1404)
.|+++|.| ..| +.+.|+.||++|.|....|.|.-.
T Consensus 501 lV~il~aD~~l~~pdfra~Er~~~~l~q~~GRagR~~~~g~viiqT~ 547 (679)
T PRK05580 501 LVGVLDADLGLFSPDFRASERTFQLLTQVAGRAGRAEKPGEVLIQTY 547 (679)
T ss_pred EEEEEcCchhccCCccchHHHHHHHHHHHHhhccCCCCCCEEEEEeC
Confidence 99999877 333 789999999999888777765543
No 73
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=99.70 E-value=2e-16 Score=178.71 Aligned_cols=323 Identities=20% Similarity=0.287 Sum_probs=217.9
Q ss_pred CCCHHHHHHHHHHHHhhccCCcEEEEcCCCchHHHHHHHHHHHHHhh-------ccCCCcE-EEEeCCCChH-HHHHHHH
Q 042857 755 ALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCE-------FKAKLPC-LVLVPLSTMP-NWLAEFA 825 (1404)
Q Consensus 755 ~L~pyQlegVnwL~~~~~~~~~~ILADEMGLGKTiqaIa~L~~L~~~-------~~~~gP~-LIVvP~Sll~-nW~rEf~ 825 (1404)
...|.|..|+--++. |+..|-..-+|.|||++...-+..+..+ ....||+ |||||..-+. |-..-++
T Consensus 192 ~PTpIQvQGlPvvLs----GRDmIGIAfTGSGKTlvFvLP~imf~LeqE~~lPf~~~EGP~gLiicPSRELArQt~~iie 267 (610)
T KOG0341|consen 192 HPTPIQVQGLPVVLS----GRDMIGIAFTGSGKTLVFVLPVIMFALEQEMMLPFARGEGPYGLIICPSRELARQTHDIIE 267 (610)
T ss_pred CCCceeecCcceEee----cCceeeEEeecCCceEEEeHHHHHHHHHHHhcCccccCCCCeeEEEcCcHHHHHHHHHHHH
Confidence 577889999876655 7888877789999998654433222211 1234564 9999998774 3333333
Q ss_pred HH--------CCCCcEEEEecchhHHHHHHHhhhccCCCCccccccCCCCceEEEeeHHHHHhhh--ccccCCCceEEEE
Q 042857 826 LW--------APNLNVVEYHGCAKARAIIRQYEWHASDPDNLNKKTSSYKFNVLLTTYEMILADS--SHLRGVPWEVLVV 895 (1404)
Q Consensus 826 kw--------~P~l~Vvvy~G~~~~R~~ir~~E~~~~~~~~~~~~~~~~kfdVvITTYe~l~~d~--~~L~~i~w~lVIV 895 (1404)
.+ .|.++.....|+...+..+.... ...||++.|+..+..-. ..+.---..++.+
T Consensus 268 ~~~~~L~e~g~P~lRs~LciGG~~v~eql~~v~---------------~GvHivVATPGRL~DmL~KK~~sLd~CRyL~l 332 (610)
T KOG0341|consen 268 QYVAALQEAGYPELRSLLCIGGVPVREQLDVVR---------------RGVHIVVATPGRLMDMLAKKIMSLDACRYLTL 332 (610)
T ss_pred HHHHHHHhcCChhhhhhhhhcCccHHHHHHHHh---------------cCeeEEEcCcchHHHHHHHhhccHHHHHHhhh
Confidence 33 26778788888877776554421 36799999998876532 1222222468999
Q ss_pred ccccccCCCc--cHHHHHHhhccccc-EEEEeccCCCCChHHHHHHhhhhCCCCCCChhHHHHHhccccchHHHHHHHHh
Q 042857 896 DEGHRLKNSG--SKLFSLLNSFSFQH-RVLLTGTPLQNNIGEMYNLLNFLQPASFPSLSSFEEKFNDLTTTQKVEELKKL 972 (1404)
Q Consensus 896 DEAHrlKN~~--Sk~~~~L~~l~~~~-rLLLTGTPlqNnl~EL~sLL~fL~P~~f~s~~~F~~~f~d~~~~~~i~~L~~l 972 (1404)
|||.|+-.-+ --+.....-|+.++ .||+|||- |.. ... |.. ..+
T Consensus 333 DEADRmiDmGFEddir~iF~~FK~QRQTLLFSATM----------------P~K---IQ~----FAk----------SAL 379 (610)
T KOG0341|consen 333 DEADRMIDMGFEDDIRTIFSFFKGQRQTLLFSATM----------------PKK---IQN----FAK----------SAL 379 (610)
T ss_pred hhHHHHhhccchhhHHHHHHHHhhhhheeeeeccc----------------cHH---HHH----HHH----------hhc
Confidence 9999986533 23334444444443 46777773 100 000 000 011
Q ss_pred hhhhhhhhhHhhhhhcCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHhCCCCCCCCC
Q 042857 973 VAPHMLRRLKKDAMQNIPPKTERMVPVELSSIQAEYYRAMLTKNYQILRNIGKGVAQQSMLNIVMQLRKVCNHPYLIPGT 1052 (1404)
Q Consensus 973 L~p~mLRR~K~dV~~~LPpk~e~iV~V~LS~~Qk~~Y~~il~~n~~~L~~~~kg~~~~sllnilm~LRK~cnHP~L~~~~ 1052 (1404)
++|. +|.|. .+...-++++.++-
T Consensus 380 VKPv-------------------tvNVG--------------------------RAGAAsldViQevE------------ 402 (610)
T KOG0341|consen 380 VKPV-------------------TVNVG--------------------------RAGAASLDVIQEVE------------ 402 (610)
T ss_pred ccce-------------------EEecc--------------------------cccccchhHHHHHH------------
Confidence 1111 11111 01111122222221
Q ss_pred CCCCCcHHHHHHHHHhhhhHHHHHHHHHHHHHHcCCeEEEEecchhHHHHHHHHHhhhcCCceEEEEeCCCCHHHHHHHH
Q 042857 1053 EPDSGSVEFLHEMRIKASAKLTLLHSMLKVLYKEGHRVLIFSQMTKLLDILEDYLNIEFGPKTYERVDGSVSVGDRQAAI 1132 (1404)
Q Consensus 1053 e~~~~~~e~l~~~~i~~SgKl~~L~kLL~kl~~~G~KVLIFSq~~~~LDiLed~L~~~f~g~~y~rLdGs~s~~eRq~~I 1132 (1404)
.++.-+|+..|.+.|.+ ..-.||||+.-..-.|-|.+||-.+ |.....|||+-.+++|..+|
T Consensus 403 -------------yVkqEaKiVylLeCLQK---T~PpVLIFaEkK~DVD~IhEYLLlK--GVEavaIHGGKDQedR~~ai 464 (610)
T KOG0341|consen 403 -------------YVKQEAKIVYLLECLQK---TSPPVLIFAEKKADVDDIHEYLLLK--GVEAVAIHGGKDQEDRHYAI 464 (610)
T ss_pred -------------HHHhhhhhhhHHHHhcc---CCCceEEEeccccChHHHHHHHHHc--cceeEEeecCcchhHHHHHH
Confidence 24566788887777654 6779999999999999999999866 89999999999999999999
Q ss_pred HHHhcCCCceEEEeecccccccccccCCCEEEEEcCCCCHhHHHHHHHhhhccCCCCcEEEEEEeeCCCHHHHHHH
Q 042857 1133 TRFNQDKSRFVFLLSTRSCGLGINLATADTVIIYDSDFNPHADIQAMNRAHRIGQSKRLLVYRLVVRASVEERILQ 1208 (1404)
Q Consensus 1133 d~Fn~~~s~~VfLLSTrAgG~GINL~~AdtVIi~DsdWNP~~d~QAigRahRiGQ~k~V~VYrLvt~~TvEE~Ilq 1208 (1404)
..|+.+... +|+.|.+++-|+++++.-+||+||.+-.-.+|.+|+||.+|-|.+.-. -.||.+++-|-.+++
T Consensus 465 ~afr~gkKD--VLVATDVASKGLDFp~iqHVINyDMP~eIENYVHRIGRTGRsg~~GiA--TTfINK~~~esvLlD 536 (610)
T KOG0341|consen 465 EAFRAGKKD--VLVATDVASKGLDFPDIQHVINYDMPEEIENYVHRIGRTGRSGKTGIA--TTFINKNQEESVLLD 536 (610)
T ss_pred HHHhcCCCc--eEEEecchhccCCCccchhhccCCChHHHHHHHHHhcccCCCCCccee--eeeecccchHHHHHH
Confidence 999988777 899999999999999999999999999999999999999999976543 446777775555544
No 74
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=99.70 E-value=6.6e-17 Score=201.91 Aligned_cols=118 Identities=18% Similarity=0.159 Sum_probs=105.8
Q ss_pred hhhHHHHHHHHHHHHHHcCCeEEEEecchhHHHHHHHHHhhhcCCceEEEEeCCCCHHHHHHHHHHHhcCCCceEEEeec
Q 042857 1069 ASAKLTLLHSMLKVLYKEGHRVLIFSQMTKLLDILEDYLNIEFGPKTYERVDGSVSVGDRQAAITRFNQDKSRFVFLLST 1148 (1404)
Q Consensus 1069 ~SgKl~~L~kLL~kl~~~G~KVLIFSq~~~~LDiLed~L~~~f~g~~y~rLdGs~s~~eRq~~Id~Fn~~~s~~VfLLST 1148 (1404)
...|+.++.+.+..+.+.|..|||||......+.|..+|... |+++..++|. +.+|+..|..|...... ++|+|
T Consensus 387 ~~~k~~ai~~~i~~~~~~grpvLV~t~si~~se~ls~~L~~~--gi~~~~Lna~--q~~rEa~ii~~ag~~g~--VtIAT 460 (745)
T TIGR00963 387 EEEKWKAVVDEIKERHAKGQPVLVGTTSVEKSELLSNLLKER--GIPHNVLNAK--NHEREAEIIAQAGRKGA--VTIAT 460 (745)
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHc--CCCeEEeeCC--hHHHHHHHHHhcCCCce--EEEEe
Confidence 356888999999888999999999999999999999999987 8899999998 78999999999654444 89999
Q ss_pred ccccccccccC-------CCEEEEEcCCCCHhHHHHHHHhhhccCCCCcEE
Q 042857 1149 RSCGLGINLAT-------ADTVIIYDSDFNPHADIQAMNRAHRIGQSKRLL 1192 (1404)
Q Consensus 1149 rAgG~GINL~~-------AdtVIi~DsdWNP~~d~QAigRahRiGQ~k~V~ 1192 (1404)
..+|+|+|+.. .-+||.++.+-|+..+.|+.||++|.|+.....
T Consensus 461 nmAgRGtDI~l~~V~~~GGl~VI~t~~p~s~ri~~q~~GRtGRqG~~G~s~ 511 (745)
T TIGR00963 461 NMAGRGTDIKLEEVKELGGLYVIGTERHESRRIDNQLRGRSGRQGDPGSSR 511 (745)
T ss_pred ccccCCcCCCccchhhcCCcEEEecCCCCcHHHHHHHhccccCCCCCcceE
Confidence 99999999987 569999999999999999999999999976654
No 75
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=99.69 E-value=1.5e-15 Score=178.17 Aligned_cols=329 Identities=19% Similarity=0.257 Sum_probs=225.8
Q ss_pred CCCHHHHHHHHHHHHhhccCCcEEEEcCCCchHHHHHHHHHHH-HHhhcc---CCCcEEEEeCCCCh-HHHHHHHHHHC-
Q 042857 755 ALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISS-LYCEFK---AKLPCLVLVPLSTM-PNWLAEFALWA- 828 (1404)
Q Consensus 755 ~L~pyQlegVnwL~~~~~~~~~~ILADEMGLGKTiqaIa~L~~-L~~~~~---~~gP~LIVvP~Sll-~nW~rEf~kw~- 828 (1404)
.+...|...+-..+. |..+|-|.-+|.|||+..+.-+.. |++..- .+--+|||.|+.-| .|-..-+.+..
T Consensus 91 ~~teiQ~~~Ip~aL~----G~DvlGAAkTGSGKTLAFlvPvlE~L~r~kWs~~DGlGalIISPTRELA~QtFevL~kvgk 166 (758)
T KOG0343|consen 91 KMTEIQRDTIPMALQ----GHDVLGAAKTGSGKTLAFLVPVLEALYRLKWSPTDGLGALIISPTRELALQTFEVLNKVGK 166 (758)
T ss_pred cHHHHHHhhcchhcc----CcccccccccCCCceeeehHHHHHHHHHcCCCCCCCceeEEecchHHHHHHHHHHHHHHhh
Confidence 467788888876655 889999999999999987765543 433221 11248999999766 45444444443
Q ss_pred -CCCcEEEEecchhHHHHHHHhhhccCCCCccccccCCCCceEEEeeHHHHHhhh---ccccCCCceEEEEccccccCCC
Q 042857 829 -PNLNVVEYHGCAKARAIIRQYEWHASDPDNLNKKTSSYKFNVLLTTYEMILADS---SHLRGVPWEVLVVDEGHRLKNS 904 (1404)
Q Consensus 829 -P~l~Vvvy~G~~~~R~~ir~~E~~~~~~~~~~~~~~~~kfdVvITTYe~l~~d~---~~L~~i~w~lVIVDEAHrlKN~ 904 (1404)
.++......|+.+...... .....+|+|.|+..+..+. ..|.--...++|+|||.|+-..
T Consensus 167 ~h~fSaGLiiGG~~~k~E~e----------------Ri~~mNILVCTPGRLLQHmde~~~f~t~~lQmLvLDEADR~LDM 230 (758)
T KOG0343|consen 167 HHDFSAGLIIGGKDVKFELE----------------RISQMNILVCTPGRLLQHMDENPNFSTSNLQMLVLDEADRMLDM 230 (758)
T ss_pred ccccccceeecCchhHHHHH----------------hhhcCCeEEechHHHHHHhhhcCCCCCCcceEEEeccHHHHHHH
Confidence 2567777777766442211 2246789999999998754 3455567889999999998754
Q ss_pred c--cHHHHHHhhccc-ccEEEEeccCCCCChHHHHHHhhhhCCCCCCChhHHHHHhccccchHHHHHHHHhhhhhhhhhh
Q 042857 905 G--SKLFSLLNSFSF-QHRVLLTGTPLQNNIGEMYNLLNFLQPASFPSLSSFEEKFNDLTTTQKVEELKKLVAPHMLRRL 981 (1404)
Q Consensus 905 ~--Sk~~~~L~~l~~-~~rLLLTGTPlqNnl~EL~sLL~fL~P~~f~s~~~F~~~f~d~~~~~~i~~L~~lL~p~mLRR~ 981 (1404)
+ ..+..++..|.. +..||+|||+- +++.+|..| .+-+|.+
T Consensus 231 GFk~tL~~Ii~~lP~~RQTLLFSATqt-~svkdLaRL-sL~dP~~----------------------------------- 273 (758)
T KOG0343|consen 231 GFKKTLNAIIENLPKKRQTLLFSATQT-KSVKDLARL-SLKDPVY----------------------------------- 273 (758)
T ss_pred hHHHHHHHHHHhCChhheeeeeecccc-hhHHHHHHh-hcCCCcE-----------------------------------
Confidence 3 345556666653 44599999984 334443221 1122211
Q ss_pred HhhhhhcCCCceEEEEE---ecCCHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCc
Q 042857 982 KKDAMQNIPPKTERMVP---VELSSIQAEYYRAMLTKNYQILRNIGKGVAQQSMLNIVMQLRKVCNHPYLIPGTEPDSGS 1058 (1404)
Q Consensus 982 K~dV~~~LPpk~e~iV~---V~LS~~Qk~~Y~~il~~n~~~L~~~~kg~~~~sllnilm~LRK~cnHP~L~~~~e~~~~~ 1058 (1404)
+.|. +.-+|.+ |+|. |++
T Consensus 274 -------------vsvhe~a~~atP~~---------------------------------L~Q~----y~~--------- 294 (758)
T KOG0343|consen 274 -------------VSVHENAVAATPSN---------------------------------LQQS----YVI--------- 294 (758)
T ss_pred -------------EEEeccccccChhh---------------------------------hhhe----EEE---------
Confidence 1111 0011111 0000 010
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHcCCeEEEEecchhHHHHHHHHHhhhcCCceEEEEeCCCCHHHHHHHHHHHhcC
Q 042857 1059 VEFLHEMRIKASAKLTLLHSMLKVLYKEGHRVLIFSQMTKLLDILEDYLNIEFGPKTYERVDGSVSVGDRQAAITRFNQD 1138 (1404)
Q Consensus 1059 ~e~l~~~~i~~SgKl~~L~kLL~kl~~~G~KVLIFSq~~~~LDiLed~L~~~f~g~~y~rLdGs~s~~eRq~~Id~Fn~~ 1138 (1404)
+..-.|+..|...|.... ..|.|||...-.....+...+...-+|+....|+|.+++..|.++..+|...
T Consensus 295 --------v~l~~Ki~~L~sFI~shl--k~K~iVF~SscKqvkf~~e~F~rlrpg~~l~~L~G~~~Q~~R~ev~~~F~~~ 364 (758)
T KOG0343|consen 295 --------VPLEDKIDMLWSFIKSHL--KKKSIVFLSSCKQVKFLYEAFCRLRPGIPLLALHGTMSQKKRIEVYKKFVRK 364 (758)
T ss_pred --------EehhhHHHHHHHHHHhcc--ccceEEEEehhhHHHHHHHHHHhcCCCCceeeeccchhHHHHHHHHHHHHHh
Confidence 112346666666666543 3588999888888888887777666899999999999999999999999754
Q ss_pred CCceEEEeecccccccccccCCCEEEEEcCCCCHhHHHHHHHhhhccCCCCcEEEEEEeeCCCHHHHHHHHHHHHH
Q 042857 1139 KSRFVFLLSTRSCGLGINLATADTVIIYDSDFNPHADIQAMNRAHRIGQSKRLLVYRLVVRASVEERILQLAKKKL 1214 (1404)
Q Consensus 1139 ~s~~VfLLSTrAgG~GINL~~AdtVIi~DsdWNP~~d~QAigRahRiGQ~k~V~VYrLvt~~TvEE~Ilq~a~~Kl 1214 (1404)
..++|.+|.++++||++++.|.||-||-|-+...|++|.||..|.+...+..+|-+ -+-||.|+..+++|.
T Consensus 365 --~~~vLF~TDv~aRGLDFpaVdwViQ~DCPedv~tYIHRvGRtAR~~~~G~sll~L~---psEeE~~l~~Lq~k~ 435 (758)
T KOG0343|consen 365 --RAVVLFCTDVAARGLDFPAVDWVIQVDCPEDVDTYIHRVGRTARYKERGESLLMLT---PSEEEAMLKKLQKKK 435 (758)
T ss_pred --cceEEEeehhhhccCCCcccceEEEecCchhHHHHHHHhhhhhcccCCCceEEEEc---chhHHHHHHHHHHcC
Confidence 34689999999999999999999999999999999999999999998777655432 334688888777664
No 76
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.69 E-value=3.4e-15 Score=174.97 Aligned_cols=369 Identities=18% Similarity=0.244 Sum_probs=202.6
Q ss_pred CCHHHHHHHHHHHHhhccCCcEEEEcCCCchHHHHHHHHHHHHHhhc-----cCCCc-EEEEeCCCCh-HHHHHHHHHHC
Q 042857 756 LFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEF-----KAKLP-CLVLVPLSTM-PNWLAEFALWA 828 (1404)
Q Consensus 756 L~pyQlegVnwL~~~~~~~~~~ILADEMGLGKTiqaIa~L~~L~~~~-----~~~gP-~LIVvP~Sll-~nW~rEf~kw~ 828 (1404)
+...|..++--|+. ++.+++-..+|.|||+..+.-|...+... ...|| .||+||+.-| .|-..-+.+..
T Consensus 160 pTsVQkq~IP~lL~----grD~lV~aQTGSGKTLAYllPiVq~Lq~m~~ki~Rs~G~~ALVivPTREL~~Q~y~~~qKLl 235 (708)
T KOG0348|consen 160 PTSVQKQAIPVLLE----GRDALVRAQTGSGKTLAYLLPIVQSLQAMEPKIQRSDGPYALVIVPTRELALQIYETVQKLL 235 (708)
T ss_pred cchHhhcchhhhhc----CcceEEEcCCCCcccHHHHHHHHHHHHhcCccccccCCceEEEEechHHHHHHHHHHHHHHh
Confidence 34456666666655 89999999999999999888777655432 23345 5999999766 66666677766
Q ss_pred CCCcEEE---Eecc-hhHHHHHHHhhhccCCCCccccccCCCCceEEEeeHHHHHhhhccccCC---CceEEEEcccccc
Q 042857 829 PNLNVVE---YHGC-AKARAIIRQYEWHASDPDNLNKKTSSYKFNVLLTTYEMILADSSHLRGV---PWEVLVVDEGHRL 901 (1404)
Q Consensus 829 P~l~Vvv---y~G~-~~~R~~ir~~E~~~~~~~~~~~~~~~~kfdVvITTYe~l~~d~~~L~~i---~w~lVIVDEAHrl 901 (1404)
..+.++| ..|+ +...+..|. ..+.+|+|.|+..+.+....-..+ ....||+|||.||
T Consensus 236 ~~~hWIVPg~lmGGEkkKSEKARL----------------RKGiNILIgTPGRLvDHLknT~~i~~s~LRwlVlDEaDrl 299 (708)
T KOG0348|consen 236 KPFHWIVPGVLMGGEKKKSEKARL----------------RKGINILIGTPGRLVDHLKNTKSIKFSRLRWLVLDEADRL 299 (708)
T ss_pred cCceEEeeceeecccccccHHHHH----------------hcCceEEEcCchHHHHHHhccchheeeeeeEEEecchhHH
Confidence 4444332 2333 221111111 136799999999998875443333 3467999999998
Q ss_pred CCCccHHHHHHhhcccccEEEEeccCCCCChHHHHHHhhhhCCCCCCChhHHHHHhccccchHHHHHHHHhhhhhhhhhh
Q 042857 902 KNSGSKLFSLLNSFSFQHRVLLTGTPLQNNIGEMYNLLNFLQPASFPSLSSFEEKFNDLTTTQKVEELKKLVAPHMLRRL 981 (1404)
Q Consensus 902 KN~~Sk~~~~L~~l~~~~rLLLTGTPlqNnl~EL~sLL~fL~P~~f~s~~~F~~~f~d~~~~~~i~~L~~lL~p~mLRR~ 981 (1404)
-.-+- . .++--+|+.+....-. ...+.++ ..+++.+|-.-.|.-.
T Consensus 300 leLGf----------------------e---kdit~Il~~v~~~~~~-----e~~~~~l-----p~q~q~mLlSATLtd~ 344 (708)
T KOG0348|consen 300 LELGF----------------------E---KDITQILKAVHSIQNA-----ECKDPKL-----PHQLQNMLLSATLTDG 344 (708)
T ss_pred Hhccc----------------------h---hhHHHHHHHHhhccch-----hcccccc-----cHHHHhHhhhhhhHHH
Confidence 53211 0 1112222222110000 0000000 0011111111111000
Q ss_pred HhhhhhcCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCcHHH
Q 042857 982 KKDAMQNIPPKTERMVPVELSSIQAEYYRAMLTKNYQILRNIGKGVAQQSMLNIVMQLRKVCNHPYLIPGTEPDSGSVEF 1061 (1404)
Q Consensus 982 K~dV~~~LPpk~e~iV~V~LS~~Qk~~Y~~il~~n~~~L~~~~kg~~~~sllnilm~LRK~cnHP~L~~~~e~~~~~~e~ 1061 (1404)
..+ +.++.-+....|..+-+..|.. --...+.-+|.-|+-.+- .....++.
T Consensus 345 V~r-La~~sLkDpv~I~ld~s~~~~~--------------------------p~~~a~~ev~~~~~~~~l--~~~~iPeq 395 (708)
T KOG0348|consen 345 VNR-LADLSLKDPVYISLDKSHSQLN--------------------------PKDKAVQEVDDGPAGDKL--DSFAIPEQ 395 (708)
T ss_pred HHH-HhhccccCceeeeccchhhhcC--------------------------cchhhhhhcCCccccccc--ccccCcHH
Confidence 000 0011111111111111111110 000001112221111111 11111222
Q ss_pred HHHHHHhhhh--HHHHHHHHHHHHHH--cCCeEEEEecchhHHHHHHHHHhhh--------------------cCCceEE
Q 042857 1062 LHEMRIKASA--KLTLLHSMLKVLYK--EGHRVLIFSQMTKLLDILEDYLNIE--------------------FGPKTYE 1117 (1404)
Q Consensus 1062 l~~~~i~~Sg--Kl~~L~kLL~kl~~--~G~KVLIFSq~~~~LDiLed~L~~~--------------------f~g~~y~ 1117 (1404)
+.....-..+ .+..|..+|....+ ...|+|||.....+.+.=.+.|... |.+.++.
T Consensus 396 L~qry~vVPpKLRLV~Laa~L~~~~k~~~~qk~iVF~S~~d~VeFHy~lf~~~l~~~~e~~s~~~~s~g~~~l~~~~k~~ 475 (708)
T KOG0348|consen 396 LLQRYTVVPPKLRLVALAALLLNKVKFEEKQKMIVFFSCSDSVEFHYSLFSEALLSHLEGSSGAPDSEGLPPLFMDLKFY 475 (708)
T ss_pred hhhceEecCCchhHHHHHHHHHHHhhhhhhceeEEEEechhHHHHHHHHHHhhhhcccccccCCcccCCChhhhhcceEE
Confidence 2222222233 34445555554433 2458899988887776554444321 2246789
Q ss_pred EEeCCCCHHHHHHHHHHHhcCCCceEEEeecccccccccccCCCEEEEEcCCCCHhHHHHHHHhhhccCCCCcEEEEEEe
Q 042857 1118 RVDGSVSVGDRQAAITRFNQDKSRFVFLLSTRSCGLGINLATADTVIIYDSDFNPHADIQAMNRAHRIGQSKRLLVYRLV 1197 (1404)
Q Consensus 1118 rLdGs~s~~eRq~~Id~Fn~~~s~~VfLLSTrAgG~GINL~~AdtVIi~DsdWNP~~d~QAigRahRiGQ~k~V~VYrLv 1197 (1404)
|+||+|.+++|+.++..|...... +|++|.++++||||+..+.||-||+|+.+..|++|+||..|+|-+..-..| +
T Consensus 476 rLHGsm~QeeRts~f~~Fs~~~~~--VLLcTDVAaRGLDlP~V~~vVQYd~P~s~adylHRvGRTARaG~kG~alLf--L 551 (708)
T KOG0348|consen 476 RLHGSMEQEERTSVFQEFSHSRRA--VLLCTDVAARGLDLPHVGLVVQYDPPFSTADYLHRVGRTARAGEKGEALLF--L 551 (708)
T ss_pred EecCchhHHHHHHHHHhhccccce--EEEehhhhhccCCCCCcCeEEEeCCCCCHHHHHHHhhhhhhccCCCceEEE--e
Confidence 999999999999999999765554 899999999999999999999999999999999999999999987775443 3
Q ss_pred eCCCHHHHHHHHHHHHH
Q 042857 1198 VRASVEERILQLAKKKL 1214 (1404)
Q Consensus 1198 t~~TvEE~Ilq~a~~Kl 1214 (1404)
+.. |+..+..++.+.
T Consensus 552 ~P~--Eaey~~~l~~~~ 566 (708)
T KOG0348|consen 552 LPS--EAEYVNYLKKHH 566 (708)
T ss_pred ccc--HHHHHHHHHhhc
Confidence 333 333444444443
No 77
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=99.68 E-value=2.2e-15 Score=184.49 Aligned_cols=308 Identities=20% Similarity=0.242 Sum_probs=216.7
Q ss_pred CCCHHHHHHHHHHHHhhccCCcEEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEeCC-CChHHHHHHHHHHCCCCcE
Q 042857 755 ALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPL-STMPNWLAEFALWAPNLNV 833 (1404)
Q Consensus 755 ~L~pyQlegVnwL~~~~~~~~~~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP~-Sll~nW~rEf~kw~P~l~V 833 (1404)
.+||-|.++++.++. +.++|....+|-||++..-.- .++. .|.+|||.|+ +++..-.+.+.... +.+
T Consensus 17 ~FR~gQ~evI~~~l~----g~d~lvvmPTGgGKSlCyQiP--All~----~G~TLVVSPLiSLM~DQV~~l~~~G--i~A 84 (590)
T COG0514 17 SFRPGQQEIIDALLS----GKDTLVVMPTGGGKSLCYQIP--ALLL----EGLTLVVSPLISLMKDQVDQLEAAG--IRA 84 (590)
T ss_pred ccCCCHHHHHHHHHc----CCcEEEEccCCCCcchHhhhH--HHhc----CCCEEEECchHHHHHHHHHHHHHcC--cee
Confidence 578889999988877 799999999999999864322 2222 5689999997 56677777777643 555
Q ss_pred EEEecc--hhHHHHHHHhhhccCCCCccccccCCCCceEEEeeHHHHHhh--hccccCCCceEEEEccccccCCCc----
Q 042857 834 VEYHGC--AKARAIIRQYEWHASDPDNLNKKTSSYKFNVLLTTYEMILAD--SSHLRGVPWEVLVVDEGHRLKNSG---- 905 (1404)
Q Consensus 834 vvy~G~--~~~R~~ir~~E~~~~~~~~~~~~~~~~kfdVvITTYe~l~~d--~~~L~~i~w~lVIVDEAHrlKN~~---- 905 (1404)
...+++ ...+..+... ......+++..++|.+... ...|...+..+++|||||.+-.++
T Consensus 85 ~~lnS~l~~~e~~~v~~~-------------l~~g~~klLyisPErl~~~~f~~~L~~~~i~l~vIDEAHCiSqWGhdFR 151 (590)
T COG0514 85 AYLNSTLSREERQQVLNQ-------------LKSGQLKLLYISPERLMSPRFLELLKRLPISLVAIDEAHCISQWGHDFR 151 (590)
T ss_pred ehhhcccCHHHHHHHHHH-------------HhcCceeEEEECchhhcChHHHHHHHhCCCceEEechHHHHhhcCCccC
Confidence 555544 3333322221 1234678999999999875 456778899999999999986654
Q ss_pred ---cHHHHHHhhcccccEEEEeccCCCCChHHHHHHhhhhCCCCCCChhHHHHHhccccchHHHHHHHHhhhhhhhhhhH
Q 042857 906 ---SKLFSLLNSFSFQHRVLLTGTPLQNNIGEMYNLLNFLQPASFPSLSSFEEKFNDLTTTQKVEELKKLVAPHMLRRLK 982 (1404)
Q Consensus 906 ---Sk~~~~L~~l~~~~rLLLTGTPlqNnl~EL~sLL~fL~P~~f~s~~~F~~~f~d~~~~~~i~~L~~lL~p~mLRR~K 982 (1404)
..+......|....+++||||--..-..|+...|..-.+..|... |.
T Consensus 152 P~Y~~lg~l~~~~~~~p~~AlTATA~~~v~~DI~~~L~l~~~~~~~~s------fd------------------------ 201 (590)
T COG0514 152 PDYRRLGRLRAGLPNPPVLALTATATPRVRDDIREQLGLQDANIFRGS------FD------------------------ 201 (590)
T ss_pred HhHHHHHHHHhhCCCCCEEEEeCCCChHHHHHHHHHhcCCCcceEEec------CC------------------------
Confidence 345555566666678999999755555555555544443222100 00
Q ss_pred hhhhhcCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCcHHHH
Q 042857 983 KDAMQNIPPKTERMVPVELSSIQAEYYRAMLTKNYQILRNIGKGVAQQSMLNIVMQLRKVCNHPYLIPGTEPDSGSVEFL 1062 (1404)
Q Consensus 983 ~dV~~~LPpk~e~iV~V~LS~~Qk~~Y~~il~~n~~~L~~~~kg~~~~sllnilm~LRK~cnHP~L~~~~e~~~~~~e~l 1062 (1404)
.|. +|-.+. .
T Consensus 202 ------RpN----------------i~~~v~---------------------------~--------------------- 211 (590)
T COG0514 202 ------RPN----------------LALKVV---------------------------E--------------------- 211 (590)
T ss_pred ------Cch----------------hhhhhh---------------------------h---------------------
Confidence 000 000000 0
Q ss_pred HHHHHhhhhHHHHHHHHHH-HHHHcCCeEEEEecchhHHHHHHHHHhhhcCCceEEEEeCCCCHHHHHHHHHHHhcCCCc
Q 042857 1063 HEMRIKASAKLTLLHSMLK-VLYKEGHRVLIFSQMTKLLDILEDYLNIEFGPKTYERVDGSVSVGDRQAAITRFNQDKSR 1141 (1404)
Q Consensus 1063 ~~~~i~~SgKl~~L~kLL~-kl~~~G~KVLIFSq~~~~LDiLed~L~~~f~g~~y~rLdGs~s~~eRq~~Id~Fn~~~s~ 1141 (1404)
...++.+++ .|. .....+...||||......+.|..+|... |+....+||+++..+|+..-++|..++..
T Consensus 212 -----~~~~~~q~~--fi~~~~~~~~~~GIIYc~sRk~~E~ia~~L~~~--g~~a~~YHaGl~~~eR~~~q~~f~~~~~~ 282 (590)
T COG0514 212 -----KGEPSDQLA--FLATVLPQLSKSGIIYCLTRKKVEELAEWLRKN--GISAGAYHAGLSNEERERVQQAFLNDEIK 282 (590)
T ss_pred -----cccHHHHHH--HHHhhccccCCCeEEEEeeHHhHHHHHHHHHHC--CCceEEecCCCCHHHHHHHHHHHhcCCCc
Confidence 000111111 111 12233455899999999999999999987 89999999999999999999999977776
Q ss_pred eEEEeecccccccccccCCCEEEEEcCCCCHhHHHHHHHhhhccCCCCcEEEEEEeeCC
Q 042857 1142 FVFLLSTRSCGLGINLATADTVIIYDSDFNPHADIQAMNRAHRIGQSKRLLVYRLVVRA 1200 (1404)
Q Consensus 1142 ~VfLLSTrAgG~GINL~~AdtVIi~DsdWNP~~d~QAigRahRiGQ~k~V~VYrLvt~~ 1200 (1404)
++++|.|.|.|||=++...||+||+|-++..|.|-+|||+|-|....+ +-|+...
T Consensus 283 --iiVAT~AFGMGIdKpdVRfViH~~lP~s~EsYyQE~GRAGRDG~~a~a--ill~~~~ 337 (590)
T COG0514 283 --VMVATNAFGMGIDKPDVRFVIHYDLPGSIESYYQETGRAGRDGLPAEA--ILLYSPE 337 (590)
T ss_pred --EEEEeccccCccCCCCceEEEEecCCCCHHHHHHHHhhccCCCCcceE--EEeeccc
Confidence 889999999999999999999999999999999999999999986554 4444543
No 78
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.67 E-value=7.1e-16 Score=179.66 Aligned_cols=324 Identities=19% Similarity=0.280 Sum_probs=211.2
Q ss_pred CCCHHHHHHHHHHHHhhccCCcEEEEcCCCchHHHHHHHHHHHHHhhccC---CCcEEEEeCCCCh----HHHHHHHHHH
Q 042857 755 ALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKA---KLPCLVLVPLSTM----PNWLAEFALW 827 (1404)
Q Consensus 755 ~L~pyQlegVnwL~~~~~~~~~~ILADEMGLGKTiqaIa~L~~L~~~~~~---~gP~LIVvP~Sll----~nW~rEf~kw 827 (1404)
.+.|.|...+--.+- |+..+-+.-+|.|||...+.-+...+...+. ..++||+||+.-| .+-.+.+..|
T Consensus 203 ~PTpIQ~a~IPvall----gkDIca~A~TGsGKTAAF~lPiLERLlYrPk~~~~TRVLVL~PTRELaiQv~sV~~qlaqF 278 (691)
T KOG0338|consen 203 KPTPIQVATIPVALL----GKDICACAATGSGKTAAFALPILERLLYRPKKVAATRVLVLVPTRELAIQVHSVTKQLAQF 278 (691)
T ss_pred CCCchhhhcccHHhh----cchhhheecccCCchhhhHHHHHHHHhcCcccCcceeEEEEeccHHHHHHHHHHHHHHHhh
Confidence 456777766643332 6777778889999998877666654433332 2368999999766 3455666777
Q ss_pred CCCCcEEEEecchhHHHHHHHhhhccCCCCccccccCCCCceEEEeeHHHHHhhhccccCC---CceEEEEccccccCCC
Q 042857 828 APNLNVVEYHGCAKARAIIRQYEWHASDPDNLNKKTSSYKFNVLLTTYEMILADSSHLRGV---PWEVLVVDEGHRLKNS 904 (1404)
Q Consensus 828 ~P~l~Vvvy~G~~~~R~~ir~~E~~~~~~~~~~~~~~~~kfdVvITTYe~l~~d~~~L~~i---~w~lVIVDEAHrlKN~ 904 (1404)
+ ++.|+...|+-+.+.+-..+. ...||||.|+..++.+...-.++ ...++|+|||.||...
T Consensus 279 t-~I~~~L~vGGL~lk~QE~~LR---------------s~PDIVIATPGRlIDHlrNs~sf~ldsiEVLvlDEADRMLee 342 (691)
T KOG0338|consen 279 T-DITVGLAVGGLDLKAQEAVLR---------------SRPDIVIATPGRLIDHLRNSPSFNLDSIEVLVLDEADRMLEE 342 (691)
T ss_pred c-cceeeeeecCccHHHHHHHHh---------------hCCCEEEecchhHHHHhccCCCccccceeEEEechHHHHHHH
Confidence 7 799999999988776543321 35689999999998865433333 4568999999999643
Q ss_pred c--cHHHHHHhhcc-cccEEEEeccCCCCChHHHHHHhhhhCCCCCCChhHHHHHhccccchHHHHHHHHhhhhhhhhhh
Q 042857 905 G--SKLFSLLNSFS-FQHRVLLTGTPLQNNIGEMYNLLNFLQPASFPSLSSFEEKFNDLTTTQKVEELKKLVAPHMLRRL 981 (1404)
Q Consensus 905 ~--Sk~~~~L~~l~-~~~rLLLTGTPlqNnl~EL~sLL~fL~P~~f~s~~~F~~~f~d~~~~~~i~~L~~lL~p~mLRR~ 981 (1404)
+ ..+..+++... .+..+|+|||- ...+.||.+|
T Consensus 343 gFademnEii~lcpk~RQTmLFSATM-teeVkdL~sl------------------------------------------- 378 (691)
T KOG0338|consen 343 GFADEMNEIIRLCPKNRQTMLFSATM-TEEVKDLASL------------------------------------------- 378 (691)
T ss_pred HHHHHHHHHHHhccccccceeehhhh-HHHHHHHHHh-------------------------------------------
Confidence 2 23333333332 23348888884 1112222111
Q ss_pred HhhhhhcCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCcHHH
Q 042857 982 KKDAMQNIPPKTERMVPVELSSIQAEYYRAMLTKNYQILRNIGKGVAQQSMLNIVMQLRKVCNHPYLIPGTEPDSGSVEF 1061 (1404)
Q Consensus 982 K~dV~~~LPpk~e~iV~V~LS~~Qk~~Y~~il~~n~~~L~~~~kg~~~~sllnilm~LRK~cnHP~L~~~~e~~~~~~e~ 1061 (1404)
.| +...-|+|.....-.. .|.. ++++ +| +.. .
T Consensus 379 ------SL--~kPvrifvd~~~~~a~----~LtQ--EFiR-----------------IR---------~~r---e----- 410 (691)
T KOG0338|consen 379 ------SL--NKPVRIFVDPNKDTAP----KLTQ--EFIR-----------------IR---------PKR---E----- 410 (691)
T ss_pred ------hc--CCCeEEEeCCccccch----hhhH--HHhe-----------------ec---------ccc---c-----
Confidence 01 1111122221110000 0000 0000 00 000 0
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHcCCeEEEEecchhHHHHHHHHHhhhcCCceEEEEeCCCCHHHHHHHHHHHhcCCCc
Q 042857 1062 LHEMRIKASAKLTLLHSMLKVLYKEGHRVLIFSQMTKLLDILEDYLNIEFGPKTYERVDGSVSVGDRQAAITRFNQDKSR 1141 (1404)
Q Consensus 1062 l~~~~i~~SgKl~~L~kLL~kl~~~G~KVLIFSq~~~~LDiLed~L~~~f~g~~y~rLdGs~s~~eRq~~Id~Fn~~~s~ 1141 (1404)
.-+-.+|..++.++. ..+++||++.......|.-.|... |+.+.-|||+.++.+|-+.+..|....-.
T Consensus 411 --------~dRea~l~~l~~rtf--~~~~ivFv~tKk~AHRl~IllGLl--gl~agElHGsLtQ~QRlesL~kFk~~eid 478 (691)
T KOG0338|consen 411 --------GDREAMLASLITRTF--QDRTIVFVRTKKQAHRLRILLGLL--GLKAGELHGSLTQEQRLESLEKFKKEEID 478 (691)
T ss_pred --------cccHHHHHHHHHHhc--ccceEEEEehHHHHHHHHHHHHHh--hchhhhhcccccHHHHHHHHHHHHhccCC
Confidence 011223445555544 568999999999888887777765 78899999999999999999999877666
Q ss_pred eEEEeecccccccccccCCCEEEEEcCCCCHhHHHHHHHhhhccCCCCcEEEEEEeeCCCHHHHHHH
Q 042857 1142 FVFLLSTRSCGLGINLATADTVIIYDSDFNPHADIQAMNRAHRIGQSKRLLVYRLVVRASVEERILQ 1208 (1404)
Q Consensus 1142 ~VfLLSTrAgG~GINL~~AdtVIi~DsdWNP~~d~QAigRahRiGQ~k~V~VYrLvt~~TvEE~Ilq 1208 (1404)
+||+|.++++||++...-+||+|+.|-+-..|++|.||..|.|.... -.-|+..+ |..|+.
T Consensus 479 --vLiaTDvAsRGLDI~gV~tVINy~mP~t~e~Y~HRVGRTARAGRaGr--sVtlvgE~--dRkllK 539 (691)
T KOG0338|consen 479 --VLIATDVASRGLDIEGVQTVINYAMPKTIEHYLHRVGRTARAGRAGR--SVTLVGES--DRKLLK 539 (691)
T ss_pred --EEEEechhhccCCccceeEEEeccCchhHHHHHHHhhhhhhcccCcc--eEEEeccc--cHHHHH
Confidence 89999999999999999999999999999999999999999996432 23466665 555554
No 79
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=99.67 E-value=6.4e-15 Score=196.26 Aligned_cols=99 Identities=22% Similarity=0.281 Sum_probs=85.8
Q ss_pred HcCCeEEEEecchhHHHHHHHHHhhhcC-------------------------------CceEEEEeCCCCHHHHHHHHH
Q 042857 1085 KEGHRVLIFSQMTKLLDILEDYLNIEFG-------------------------------PKTYERVDGSVSVGDRQAAIT 1133 (1404)
Q Consensus 1085 ~~G~KVLIFSq~~~~LDiLed~L~~~f~-------------------------------g~~y~rLdGs~s~~eRq~~Id 1133 (1404)
..+.++|||++.....+.|...|...+. .+.....||+++.++|..+.+
T Consensus 242 ~~~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~HHGsLSkeeR~~IE~ 321 (1490)
T PRK09751 242 LRHRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDVFIARSHHGSVSKEQRAITEQ 321 (1490)
T ss_pred hcCCCEEEECCCHHHHHHHHHHHHHhhhhhccccccccchhhhhhhccccchhccccccceeeeeccccCCHHHHHHHHH
Confidence 3578999999999999999988875321 011346789999999999999
Q ss_pred HHhcCCCceEEEeecccccccccccCCCEEEEEcCCCCHhHHHHHHHhhhcc
Q 042857 1134 RFNQDKSRFVFLLSTRSCGLGINLATADTVIIYDSDFNPHADIQAMNRAHRI 1185 (1404)
Q Consensus 1134 ~Fn~~~s~~VfLLSTrAgG~GINL~~AdtVIi~DsdWNP~~d~QAigRahRi 1185 (1404)
.|.++... +|++|.+.++|||+..+|.||+|++|.+...++|++||++|.
T Consensus 322 ~fK~G~Lr--vLVATssLELGIDIg~VDlVIq~gsP~sVas~LQRiGRAGR~ 371 (1490)
T PRK09751 322 ALKSGELR--CVVATSSLELGIDMGAVDLVIQVATPLSVASGLQRIGRAGHQ 371 (1490)
T ss_pred HHHhCCce--EEEeCcHHHccCCcccCCEEEEeCCCCCHHHHHHHhCCCCCC
Confidence 99877654 889999999999999999999999999999999999999995
No 80
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=99.67 E-value=7.9e-15 Score=185.26 Aligned_cols=337 Identities=22% Similarity=0.205 Sum_probs=225.4
Q ss_pred CCCCHHHHHHHHHHHHhhccCCcEEEEcCCCchHHHHHHHHHHHHHhhcc-C----CCcEEEEeCCCChHH-HHHHHHHH
Q 042857 754 GALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFK-A----KLPCLVLVPLSTMPN-WLAEFALW 827 (1404)
Q Consensus 754 ~~L~pyQlegVnwL~~~~~~~~~~ILADEMGLGKTiqaIa~L~~L~~~~~-~----~gP~LIVvP~Sll~n-W~rEf~kw 827 (1404)
..|+|+|..++..+.. |.|+++...+|.|||..|+..+...+.... . .--+|-|.|+..|.+ -.+.++.|
T Consensus 21 ~~~t~~Q~~a~~~i~~----G~nvLiiAPTGsGKTeAAfLpil~~l~~~~~~~~~~~i~~lYIsPLkALn~Di~~rL~~~ 96 (814)
T COG1201 21 TSLTPPQRYAIPEIHS----GENVLIIAPTGSGKTEAAFLPVINELLSLGKGKLEDGIYALYISPLKALNNDIRRRLEEP 96 (814)
T ss_pred CCCCHHHHHHHHHHhC----CCceEEEcCCCCChHHHHHHHHHHHHHhccCCCCCCceEEEEeCcHHHHHHHHHHHHHHH
Confidence 4699999999987754 999999999999999998766555444331 1 124799999987754 66667777
Q ss_pred C--CCCcEEEEecchhHHHHHHHhhhccCCCCccccccCCCCceEEEeeHHHHHhh------hccccCCCceEEEEcccc
Q 042857 828 A--PNLNVVEYHGCAKARAIIRQYEWHASDPDNLNKKTSSYKFNVLLTTYEMILAD------SSHLRGVPWEVLVVDEGH 899 (1404)
Q Consensus 828 ~--P~l~Vvvy~G~~~~R~~ir~~E~~~~~~~~~~~~~~~~kfdVvITTYe~l~~d------~~~L~~i~w~lVIVDEAH 899 (1404)
. -++.|-+-||+.......+ ......||+|||+|++.-. ...|..++ +|||||.|
T Consensus 97 ~~~~G~~v~vRhGDT~~~er~r---------------~~~~PPdILiTTPEsL~lll~~~~~r~~l~~vr--~VIVDEiH 159 (814)
T COG1201 97 LRELGIEVAVRHGDTPQSEKQK---------------MLKNPPHILITTPESLAILLNSPKFRELLRDVR--YVIVDEIH 159 (814)
T ss_pred HHHcCCccceecCCCChHHhhh---------------ccCCCCcEEEeChhHHHHHhcCHHHHHHhcCCc--EEEeehhh
Confidence 5 2566777777654332211 2234679999999998643 34555555 69999999
Q ss_pred ccCCC--ccHHHHHHhhc---c-cccEEEEeccCCCCChHHHHHHhhhhCCCCCCChhHHHHHhccccchHHHHHHHHhh
Q 042857 900 RLKNS--GSKLFSLLNSF---S-FQHRVLLTGTPLQNNIGEMYNLLNFLQPASFPSLSSFEEKFNDLTTTQKVEELKKLV 973 (1404)
Q Consensus 900 rlKN~--~Sk~~~~L~~l---~-~~~rLLLTGTPlqNnl~EL~sLL~fL~P~~f~s~~~F~~~f~d~~~~~~i~~L~~lL 973 (1404)
-+.+. +++++-.|..+ . .-.|++||||- .++. -..+||.+...
T Consensus 160 el~~sKRG~~Lsl~LeRL~~l~~~~qRIGLSATV--~~~~---~varfL~g~~~-------------------------- 208 (814)
T COG1201 160 ALAESKRGVQLALSLERLRELAGDFQRIGLSATV--GPPE---EVAKFLVGFGD-------------------------- 208 (814)
T ss_pred hhhccccchhhhhhHHHHHhhCcccEEEeehhcc--CCHH---HHHHHhcCCCC--------------------------
Confidence 99863 45666555554 3 34689999994 2333 34445543321
Q ss_pred hhhhhhhhHhhhhhcCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHhCCCCCCCCCC
Q 042857 974 APHMLRRLKKDAMQNIPPKTERMVPVELSSIQAEYYRAMLTKNYQILRNIGKGVAQQSMLNIVMQLRKVCNHPYLIPGTE 1053 (1404)
Q Consensus 974 ~p~mLRR~K~dV~~~LPpk~e~iV~V~LS~~Qk~~Y~~il~~n~~~L~~~~kg~~~~sllnilm~LRK~cnHP~L~~~~e 1053 (1404)
+. .-+......+.++.|.++--.. ..+ .
T Consensus 209 -~~------~Iv~~~~~k~~~i~v~~p~~~~--~~~----------------------------------~--------- 236 (814)
T COG1201 209 -PC------EIVDVSAAKKLEIKVISPVEDL--IYD----------------------------------E--------- 236 (814)
T ss_pred -ce------EEEEcccCCcceEEEEecCCcc--ccc----------------------------------c---------
Confidence 00 0000011111111111110000 000 0
Q ss_pred CCCCcHHHHHHHHHhhhhHHHHHHHHHHHHHHcCCeEEEEecchhHHHHHHHHHhhhcCCceEEEEeCCCCHHHHHHHHH
Q 042857 1054 PDSGSVEFLHEMRIKASAKLTLLHSMLKVLYKEGHRVLIFSQMTKLLDILEDYLNIEFGPKTYERVDGSVSVGDRQAAIT 1133 (1404)
Q Consensus 1054 ~~~~~~e~l~~~~i~~SgKl~~L~kLL~kl~~~G~KVLIFSq~~~~LDiLed~L~~~f~g~~y~rLdGs~s~~eRq~~Id 1133 (1404)
.=...+.+.|..+.++...+|||++...+.+.|...|...+ +..+..-|||.+.+.|..+-+
T Consensus 237 -----------------~~~~~~~~~i~~~v~~~~ttLIF~NTR~~aE~l~~~L~~~~-~~~i~~HHgSlSre~R~~vE~ 298 (814)
T COG1201 237 -----------------ELWAALYERIAELVKKHRTTLIFTNTRSGAERLAFRLKKLG-PDIIEVHHGSLSRELRLEVEE 298 (814)
T ss_pred -----------------chhHHHHHHHHHHHhhcCcEEEEEeChHHHHHHHHHHHHhc-CCceeeecccccHHHHHHHHH
Confidence 00112333444555666789999999999999999999874 377888999999999999999
Q ss_pred HHhcCCCceEEEeecccccccccccCCCEEEEEcCCCCHhHHHHHHHhhhc-cCCCCcEEEEEEeeCCCHHHHHHHHHHH
Q 042857 1134 RFNQDKSRFVFLLSTRSCGLGINLATADTVIIYDSDFNPHADIQAMNRAHR-IGQSKRLLVYRLVVRASVEERILQLAKK 1212 (1404)
Q Consensus 1134 ~Fn~~~s~~VfLLSTrAgG~GINL~~AdtVIi~DsdWNP~~d~QAigRahR-iGQ~k~V~VYrLvt~~TvEE~Ilq~a~~ 1212 (1404)
+|.++.-. .+++|....+||+.-..|.||.|.+|-.....+||+||+++ +|. +.-+++++.+ .++.+--++-.
T Consensus 299 ~lk~G~lr--avV~TSSLELGIDiG~vdlVIq~~SP~sV~r~lQRiGRsgHr~~~---~Skg~ii~~~-r~dllE~~vi~ 372 (814)
T COG1201 299 RLKEGELK--AVVATSSLELGIDIGDIDLVIQLGSPKSVNRFLQRIGRAGHRLGE---VSKGIIIAED-RDDLLECLVLA 372 (814)
T ss_pred HHhcCCce--EEEEccchhhccccCCceEEEEeCCcHHHHHHhHhccccccccCC---cccEEEEecC-HHHHHHHHHHH
Confidence 99887744 78899999999999999999999999999999999999864 554 4445566666 66666555555
Q ss_pred HHhhhH
Q 042857 1213 KLMLDQ 1218 (1404)
Q Consensus 1213 Kl~L~~ 1218 (1404)
+..+..
T Consensus 373 ~~a~~g 378 (814)
T COG1201 373 DLALEG 378 (814)
T ss_pred HHHHhC
Confidence 554433
No 81
>KOG4284 consensus DEAD box protein [Transcription]
Probab=99.66 E-value=1.6e-15 Score=180.11 Aligned_cols=313 Identities=18% Similarity=0.198 Sum_probs=209.8
Q ss_pred CCHHHHHHHHHHHHhhccCCcEEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEeCCCCh-HHHHHHHHHHCC---CC
Q 042857 756 LFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLSTM-PNWLAEFALWAP---NL 831 (1404)
Q Consensus 756 L~pyQlegVnwL~~~~~~~~~~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP~Sll-~nW~rEf~kw~P---~l 831 (1404)
..+.|..++-.++. +...|+..--|.|||++...++..-+......--.+||+|+.-+ -|-..-|.+.+| ++
T Consensus 48 ptkiQaaAIP~~~~----kmDliVQaKSGTGKTlVfsv~av~sl~~~~~~~q~~Iv~PTREiaVQI~~tv~~v~~sf~g~ 123 (980)
T KOG4284|consen 48 PTKIQAAAIPAIFS----KMDLIVQAKSGTGKTLVFSVLAVESLDSRSSHIQKVIVTPTREIAVQIKETVRKVAPSFTGA 123 (980)
T ss_pred CCchhhhhhhhhhc----ccceEEEecCCCCceEEEEeeeehhcCcccCcceeEEEecchhhhhHHHHHHHHhcccccCc
Confidence 34567777765544 78899999999999987544433322222223347999999877 678888888887 57
Q ss_pred cEEEEecchhHHH-HHHHhhhccCCCCccccccCCCCceEEEeeHHHHHhh--hccccCCCceEEEEccccccCCCcc--
Q 042857 832 NVVEYHGCAKARA-IIRQYEWHASDPDNLNKKTSSYKFNVLLTTYEMILAD--SSHLRGVPWEVLVVDEGHRLKNSGS-- 906 (1404)
Q Consensus 832 ~Vvvy~G~~~~R~-~ir~~E~~~~~~~~~~~~~~~~kfdVvITTYe~l~~d--~~~L~~i~w~lVIVDEAHrlKN~~S-- 906 (1404)
++-+|.|+..... .+| ..+.+|+|.|+..+... ...+.--+.+++|+|||..|-...+
T Consensus 124 ~csvfIGGT~~~~d~~r-----------------lk~~rIvIGtPGRi~qL~el~~~n~s~vrlfVLDEADkL~~t~sfq 186 (980)
T KOG4284|consen 124 RCSVFIGGTAHKLDLIR-----------------LKQTRIVIGTPGRIAQLVELGAMNMSHVRLFVLDEADKLMDTESFQ 186 (980)
T ss_pred ceEEEecCchhhhhhhh-----------------hhhceEEecCchHHHHHHHhcCCCccceeEEEeccHHhhhchhhHH
Confidence 8888888765432 222 23567999999988763 3455666788999999999966443
Q ss_pred -HHHHHHhhcccc-cEEEEeccCCCCChHHHHHHhhhhCCCCCCChhHHHHHhccccchHHHHHHHHhhhhhhhhhhHhh
Q 042857 907 -KLFSLLNSFSFQ-HRVLLTGTPLQNNIGEMYNLLNFLQPASFPSLSSFEEKFNDLTTTQKVEELKKLVAPHMLRRLKKD 984 (1404)
Q Consensus 907 -k~~~~L~~l~~~-~rLLLTGTPlqNnl~EL~sLL~fL~P~~f~s~~~F~~~f~d~~~~~~i~~L~~lL~p~mLRR~K~d 984 (1404)
.+..++..+... -.+..|||=- .+|.+ .|.+.++--+|-|...+
T Consensus 187 ~~In~ii~slP~~rQv~a~SATYp-~nLdn---------------------------------~Lsk~mrdp~lVr~n~~ 232 (980)
T KOG4284|consen 187 DDINIIINSLPQIRQVAAFSATYP-RNLDN---------------------------------LLSKFMRDPALVRFNAD 232 (980)
T ss_pred HHHHHHHHhcchhheeeEEeccCc-hhHHH---------------------------------HHHHHhcccceeecccC
Confidence 455666777644 4566888832 22222 12222222222222222
Q ss_pred hhhcCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCcHHHHHH
Q 042857 985 AMQNIPPKTERMVPVELSSIQAEYYRAMLTKNYQILRNIGKGVAQQSMLNIVMQLRKVCNHPYLIPGTEPDSGSVEFLHE 1064 (1404)
Q Consensus 985 V~~~LPpk~e~iV~V~LS~~Qk~~Y~~il~~n~~~L~~~~kg~~~~sllnilm~LRK~cnHP~L~~~~e~~~~~~e~l~~ 1064 (1404)
...-+--+..+.+.+... ...+.
T Consensus 233 d~~L~GikQyv~~~~s~n------------------------------------------------------nsvee--- 255 (980)
T KOG4284|consen 233 DVQLFGIKQYVVAKCSPN------------------------------------------------------NSVEE--- 255 (980)
T ss_pred CceeechhheeeeccCCc------------------------------------------------------chHHH---
Confidence 111111111111111100 00000
Q ss_pred HHHhhhhHHHHHHHHHHHHHHcCCeEEEEecchhHHHHHHHHHhhhcCCceEEEEeCCCCHHHHHHHHHHHhcCCCceEE
Q 042857 1065 MRIKASAKLTLLHSMLKVLYKEGHRVLIFSQMTKLLDILEDYLNIEFGPKTYERVDGSVSVGDRQAAITRFNQDKSRFVF 1144 (1404)
Q Consensus 1065 ~~i~~SgKl~~L~kLL~kl~~~G~KVLIFSq~~~~LDiLed~L~~~f~g~~y~rLdGs~s~~eRq~~Id~Fn~~~s~~Vf 1144 (1404)
.--|++.|..++..+.= ...||||....-++-|.++|... |+.+..|.|.|++.+|+.+++.+++-. .-+
T Consensus 256 ----mrlklq~L~~vf~~ipy--~QAlVF~~~~sra~~~a~~L~ss--G~d~~~ISgaM~Q~~Rl~a~~~lr~f~--~rI 325 (980)
T KOG4284|consen 256 ----MRLKLQKLTHVFKSIPY--VQALVFCDQISRAEPIATHLKSS--GLDVTFISGAMSQKDRLLAVDQLRAFR--VRI 325 (980)
T ss_pred ----HHHHHHHHHHHHhhCch--HHHHhhhhhhhhhhHHHHHhhcc--CCCeEEeccccchhHHHHHHHHhhhce--EEE
Confidence 01244444444444321 25799999999999999999976 899999999999999999999986543 349
Q ss_pred EeecccccccccccCCCEEEEEcCCCCHhHHHHHHHhhhccCCCCc
Q 042857 1145 LLSTRSCGLGINLATADTVIIYDSDFNPHADIQAMNRAHRIGQSKR 1190 (1404)
Q Consensus 1145 LLSTrAgG~GINL~~AdtVIi~DsdWNP~~d~QAigRahRiGQ~k~ 1190 (1404)
|+||...++||+-..++.||.+|++-+-..|.+|||||+|+|...-
T Consensus 326 LVsTDLtaRGIDa~~vNLVVNiD~p~d~eTY~HRIGRAgRFG~~G~ 371 (980)
T KOG4284|consen 326 LVSTDLTARGIDADNVNLVVNIDAPADEETYFHRIGRAGRFGAHGA 371 (980)
T ss_pred EEecchhhccCCccccceEEecCCCcchHHHHHHhhhcccccccce
Confidence 9999999999999999999999999999999999999999997543
No 82
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=99.66 E-value=2.9e-14 Score=169.52 Aligned_cols=87 Identities=24% Similarity=0.313 Sum_probs=72.6
Q ss_pred cCCeEEEEecchhHHHHHHHHHhhhcCCceEEEEeCCCCHHHHHHHHHHHhcCCCceEEEeecccccccccccCCCEEEE
Q 042857 1086 EGHRVLIFSQMTKLLDILEDYLNIEFGPKTYERVDGSVSVGDRQAAITRFNQDKSRFVFLLSTRSCGLGINLATADTVII 1165 (1404)
Q Consensus 1086 ~G~KVLIFSq~~~~LDiLed~L~~~f~g~~y~rLdGs~s~~eRq~~Id~Fn~~~s~~VfLLSTrAgG~GINL~~AdtVIi 1165 (1404)
.|.++|||++....++.+...|.....++.+..++|.++..+|.++. ...+|++|.++++|||+.. +.||
T Consensus 271 ~~~k~LIf~nt~~~~~~l~~~L~~~~~~~~~~~l~g~~~~~~R~~~~--------~~~iLVaTdv~~rGiDi~~-~~vi- 340 (357)
T TIGR03158 271 PGERGAIILDSLDEVNRLSDLLQQQGLGDDIGRITGFAPKKDRERAM--------QFDILLGTSTVDVGVDFKR-DWLI- 340 (357)
T ss_pred CCCeEEEEECCHHHHHHHHHHHhhhCCCceEEeeecCCCHHHHHHhc--------cCCEEEEecHHhcccCCCC-ceEE-
Confidence 57899999999999999999998653356788999999999887653 2348999999999999975 4666
Q ss_pred EcCCCCHhHHHHHHHhhh
Q 042857 1166 YDSDFNPHADIQAMNRAH 1183 (1404)
Q Consensus 1166 ~DsdWNP~~d~QAigRah 1183 (1404)
++ +-++..++||+||++
T Consensus 341 ~~-p~~~~~yiqR~GR~g 357 (357)
T TIGR03158 341 FS-ARDAAAFWQRLGRLG 357 (357)
T ss_pred EC-CCCHHHHhhhcccCC
Confidence 66 578999999999975
No 83
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=99.65 E-value=1.3e-14 Score=187.46 Aligned_cols=334 Identities=20% Similarity=0.208 Sum_probs=222.7
Q ss_pred CCCHHHHHHHHHHHHhhccCCcEEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEeCCCCh-HHHHHHHHHHC---C-
Q 042857 755 ALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLSTM-PNWLAEFALWA---P- 829 (1404)
Q Consensus 755 ~L~pyQlegVnwL~~~~~~~~~~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP~Sll-~nW~rEf~kw~---P- 829 (1404)
.|+.||.++++.+.. |+++|+.-.||.|||...+..|.......... .+|+|-|...| ......|.+|. |
T Consensus 70 ~lY~HQ~~A~~~~~~----G~~vvVtTgTgSGKTe~FllPIld~~l~~~~a-~AL~lYPtnALa~DQ~~rl~~~~~~~~~ 144 (851)
T COG1205 70 RLYSHQVDALRLIRE----GRNVVVTTGTGSGKTESFLLPILDHLLRDPSA-RALLLYPTNALANDQAERLRELISDLPG 144 (851)
T ss_pred cccHHHHHHHHHHHC----CCCEEEECCCCCchhHHHHHHHHHHHhhCcCc-cEEEEechhhhHhhHHHHHHHHHHhCCC
Confidence 499999999988765 89999999999999999988877765444433 78999998877 45677788774 4
Q ss_pred CCcEEEEecchhHHHHHHHhhhccCCCCccccccCCCCceEEEeeHHHHHhhh------ccccCCCceEEEEccccccCC
Q 042857 830 NLNVVEYHGCAKARAIIRQYEWHASDPDNLNKKTSSYKFNVLLTTYEMILADS------SHLRGVPWEVLVVDEGHRLKN 903 (1404)
Q Consensus 830 ~l~Vvvy~G~~~~R~~ir~~E~~~~~~~~~~~~~~~~kfdVvITTYe~l~~d~------~~L~~i~w~lVIVDEAHrlKN 903 (1404)
.+++..|+|+........-+ ....+||+|+|+|+.... -.+..-++.+|||||+|.+++
T Consensus 145 ~v~~~~y~Gdt~~~~r~~~~---------------~~pp~IllTNpdMLh~~llr~~~~~~~~~~~Lk~lVvDElHtYrG 209 (851)
T COG1205 145 KVTFGRYTGDTPPEERRAII---------------RNPPDILLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVDELHTYRG 209 (851)
T ss_pred cceeeeecCCCChHHHHHHH---------------hCCCCEEEeCHHHHHHHhccCcchHHHHHhcCcEEEEecceeccc
Confidence 57788999975443221111 136799999999986521 111122388999999999987
Q ss_pred -CccHHHHHHhhcc--------cccEEEEeccCCCCChHHHHHHhhhhCCCCCCChhHHHHHhccccchHHHHHHHHhhh
Q 042857 904 -SGSKLFSLLNSFS--------FQHRVLLTGTPLQNNIGEMYNLLNFLQPASFPSLSSFEEKFNDLTTTQKVEELKKLVA 974 (1404)
Q Consensus 904 -~~Sk~~~~L~~l~--------~~~rLLLTGTPlqNnl~EL~sLL~fL~P~~f~s~~~F~~~f~d~~~~~~i~~L~~lL~ 974 (1404)
.+|-..-.++++. ....++.|||- .+..+|...+....-.
T Consensus 210 v~GS~vA~llRRL~~~~~~~~~~~q~i~~SAT~--------------------~np~e~~~~l~~~~f~----------- 258 (851)
T COG1205 210 VQGSEVALLLRRLLRRLRRYGSPLQIICTSATL--------------------ANPGEFAEELFGRDFE----------- 258 (851)
T ss_pred cchhHHHHHHHHHHHHHhccCCCceEEEEeccc--------------------cChHHHHHHhcCCcce-----------
Confidence 4455555555553 23447788883 2233333333211000
Q ss_pred hhhhhhhHhhhh-hcCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHhCCCCCCCCCC
Q 042857 975 PHMLRRLKKDAM-QNIPPKTERMVPVELSSIQAEYYRAMLTKNYQILRNIGKGVAQQSMLNIVMQLRKVCNHPYLIPGTE 1053 (1404)
Q Consensus 975 p~mLRR~K~dV~-~~LPpk~e~iV~V~LS~~Qk~~Y~~il~~n~~~L~~~~kg~~~~sllnilm~LRK~cnHP~L~~~~e 1053 (1404)
..+. ..-|....+.+.-.. +.+...+.
T Consensus 259 --------~~v~~~g~~~~~~~~~~~~p-~~~~~~~~------------------------------------------- 286 (851)
T COG1205 259 --------VPVDEDGSPRGLRYFVRREP-PIRELAES------------------------------------------- 286 (851)
T ss_pred --------eeccCCCCCCCceEEEEeCC-cchhhhhh-------------------------------------------
Confidence 0011 112222222221111 10000000
Q ss_pred CCCCcHHHHHHHHHhhhhHHHHHHHHHHHHHHcCCeEEEEecchhHHHHHHHHHhhhcC--C----ceEEEEeCCCCHHH
Q 042857 1054 PDSGSVEFLHEMRIKASAKLTLLHSMLKVLYKEGHRVLIFSQMTKLLDILEDYLNIEFG--P----KTYERVDGSVSVGD 1127 (1404)
Q Consensus 1054 ~~~~~~e~l~~~~i~~SgKl~~L~kLL~kl~~~G~KVLIFSq~~~~LDiLed~L~~~f~--g----~~y~rLdGs~s~~e 1127 (1404)
..-.+...+..++..+..+|-++|+|+.....+..+.......+. + ..+....|++...+
T Consensus 287 --------------~r~s~~~~~~~~~~~~~~~~~~tL~F~~sr~~~e~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~e 352 (851)
T COG1205 287 --------------IRRSALAELATLAALLVRNGIQTLVFFRSRKQVELLYLSPRRRLVREGGKLLDAVSTYRAGLHREE 352 (851)
T ss_pred --------------cccchHHHHHHHHHHHHHcCceEEEEEehhhhhhhhhhchhHHHhhcchhhhhheeeccccCCHHH
Confidence 001344556667777888999999999999999888522221111 2 45677899999999
Q ss_pred HHHHHHHHhcCCCceEEEeecccccccccccCCCEEEEEcCCC-CHhHHHHHHHhhhccCCCCcEEEEEEeeCCCHHHHH
Q 042857 1128 RQAAITRFNQDKSRFVFLLSTRSCGLGINLATADTVIIYDSDF-NPHADIQAMNRAHRIGQSKRLLVYRLVVRASVEERI 1206 (1404)
Q Consensus 1128 Rq~~Id~Fn~~~s~~VfLLSTrAgG~GINL~~AdtVIi~DsdW-NP~~d~QAigRahRiGQ~k~V~VYrLvt~~TvEE~I 1206 (1404)
|..+...|..++.. ++++|.|..+||++-..|.||.+.-|- .-....|+.||++|-||.- .++...-.+-++..+
T Consensus 353 r~~ie~~~~~g~~~--~~~st~AlelgidiG~ldavi~~g~P~~s~~~~~Q~~GRaGR~~~~~--l~~~v~~~~~~d~yy 428 (851)
T COG1205 353 RRRIEAEFKEGELL--GVIATNALELGIDIGSLDAVIAYGYPGVSVLSFRQRAGRAGRRGQES--LVLVVLRSDPLDSYY 428 (851)
T ss_pred HHHHHHHHhcCCcc--EEecchhhhhceeehhhhhHhhcCCCCchHHHHHHhhhhccCCCCCc--eEEEEeCCCccchhh
Confidence 99999999987766 889999999999999999999999998 7899999999999999533 333333366677766
Q ss_pred HHH
Q 042857 1207 LQL 1209 (1404)
Q Consensus 1207 lq~ 1209 (1404)
+..
T Consensus 429 ~~~ 431 (851)
T COG1205 429 LRH 431 (851)
T ss_pred hhC
Confidence 653
No 84
>PRK09401 reverse gyrase; Reviewed
Probab=99.64 E-value=6.3e-15 Score=195.61 Aligned_cols=291 Identities=16% Similarity=0.178 Sum_probs=184.2
Q ss_pred CCCCCHHHHHHHHHHHHhhccCCcEEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEeCCCCh-HHHHHHHHHHCCC-
Q 042857 753 GGALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLSTM-PNWLAEFALWAPN- 830 (1404)
Q Consensus 753 g~~L~pyQlegVnwL~~~~~~~~~~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP~Sll-~nW~rEf~kw~P~- 830 (1404)
|..++|+|..++..++. +.++++..++|.|||..++.++..+. .....+|||+|+..| .||...|..++..
T Consensus 78 G~~pt~iQ~~~i~~il~----g~dv~i~ApTGsGKT~f~l~~~~~l~---~~g~~alIL~PTreLa~Qi~~~l~~l~~~~ 150 (1176)
T PRK09401 78 GSKPWSLQRTWAKRLLL----GESFAIIAPTGVGKTTFGLVMSLYLA---KKGKKSYIIFPTRLLVEQVVEKLEKFGEKV 150 (1176)
T ss_pred CCCCcHHHHHHHHHHHC----CCcEEEEcCCCCCHHHHHHHHHHHHH---hcCCeEEEEeccHHHHHHHHHHHHHHhhhc
Confidence 55899999988876654 88999999999999964443333332 124579999999755 8999999998754
Q ss_pred -CcEEEEecch----hHHH-HHHHhhhccCCCCccccccCCCCceEEEeeHHHHHhhhccccCCCceEEEEccccccCCC
Q 042857 831 -LNVVEYHGCA----KARA-IIRQYEWHASDPDNLNKKTSSYKFNVLLTTYEMILADSSHLRGVPWEVLVVDEGHRLKNS 904 (1404)
Q Consensus 831 -l~Vvvy~G~~----~~R~-~ir~~E~~~~~~~~~~~~~~~~kfdVvITTYe~l~~d~~~L~~i~w~lVIVDEAHrlKN~ 904 (1404)
+.+.+..|.. ..+. ..... ....++|+|+|++.+......+....+++|||||||++-..
T Consensus 151 ~~~~~~~~g~~~~~~~ek~~~~~~l--------------~~~~~~IlV~Tp~rL~~~~~~l~~~~~~~lVvDEaD~~L~~ 216 (1176)
T PRK09401 151 GCGVKILYYHSSLKKKEKEEFLERL--------------KEGDFDILVTTSQFLSKNFDELPKKKFDFVFVDDVDAVLKS 216 (1176)
T ss_pred CceEEEEEccCCcchhHHHHHHHHH--------------hcCCCCEEEECHHHHHHHHHhccccccCEEEEEChHHhhhc
Confidence 3443333322 1111 11111 12357999999999988776666667999999999997531
Q ss_pred c--------------cHHHHHHhhcc-------------------------cccEEEEeccCCCCChHH-HH-HHhhhhC
Q 042857 905 G--------------SKLFSLLNSFS-------------------------FQHRVLLTGTPLQNNIGE-MY-NLLNFLQ 943 (1404)
Q Consensus 905 ~--------------Sk~~~~L~~l~-------------------------~~~rLLLTGTPlqNnl~E-L~-sLL~fL~ 943 (1404)
. ..+..++..++ ....+++|||.-...+.. ++ .++.
T Consensus 217 ~k~id~~l~~lGF~~~~i~~i~~~i~~~~~~~~~~~~i~~l~~~i~~~~~~~~q~ilfSAT~~~~~~~~~l~~~ll~--- 293 (1176)
T PRK09401 217 SKNIDKLLYLLGFSEEDIEKAMELIRLKRKYEEIYEKIRELEEKIAELKDKKGVLVVSSATGRPRGNRVKLFRELLG--- 293 (1176)
T ss_pred ccchhhHHHhCCCCHHHHHHHHHhcccccccchhhhHHHHHHHhhhhcccCCceEEEEeCCCCccchHHHHhhccce---
Confidence 1 11222222222 233567788864322211 00 0000
Q ss_pred CCCCCChhHHHHHhccccchHHHHHHHHhhhhhhhhhhHhhhhhcCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHhh
Q 042857 944 PASFPSLSSFEEKFNDLTTTQKVEELKKLVAPHMLRRLKKDAMQNIPPKTERMVPVELSSIQAEYYRAMLTKNYQILRNI 1023 (1404)
Q Consensus 944 P~~f~s~~~F~~~f~d~~~~~~i~~L~~lL~p~mLRR~K~dV~~~LPpk~e~iV~V~LS~~Qk~~Y~~il~~n~~~L~~~ 1023 (1404)
|-+.+. ...+....
T Consensus 294 --------------------------------~~v~~~----~~~~rnI~------------------------------ 307 (1176)
T PRK09401 294 --------------------------------FEVGSP----VFYLRNIV------------------------------ 307 (1176)
T ss_pred --------------------------------EEecCc----ccccCCce------------------------------
Confidence 000000 00000000
Q ss_pred ccchhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCcHHHHHHHHHhhhhHHHHHHHHHHHHHHcCCeEEEEecchhH---H
Q 042857 1024 GKGVAQQSMLNIVMQLRKVCNHPYLIPGTEPDSGSVEFLHEMRIKASAKLTLLHSMLKVLYKEGHRVLIFSQMTKL---L 1100 (1404)
Q Consensus 1024 ~kg~~~~sllnilm~LRK~cnHP~L~~~~e~~~~~~e~l~~~~i~~SgKl~~L~kLL~kl~~~G~KVLIFSq~~~~---L 1100 (1404)
|-|+. ...|...|..++..+ |..+|||++.... +
T Consensus 308 ---------------------~~yi~-------------------~~~k~~~L~~ll~~l---~~~~LIFv~t~~~~~~a 344 (1176)
T PRK09401 308 ---------------------DSYIV-------------------DEDSVEKLVELVKRL---GDGGLIFVPSDKGKEYA 344 (1176)
T ss_pred ---------------------EEEEE-------------------cccHHHHHHHHHHhc---CCCEEEEEecccChHHH
Confidence 00000 002334444555443 5689999998766 9
Q ss_pred HHHHHHHhhhcCCceEEEEeCCCCHHHHHHHHHHHhcCCCceEEEee----cccccccccccC-CCEEEEEcCCC-----
Q 042857 1101 DILEDYLNIEFGPKTYERVDGSVSVGDRQAAITRFNQDKSRFVFLLS----TRSCGLGINLAT-ADTVIIYDSDF----- 1170 (1404)
Q Consensus 1101 DiLed~L~~~f~g~~y~rLdGs~s~~eRq~~Id~Fn~~~s~~VfLLS----TrAgG~GINL~~-AdtVIi~DsdW----- 1170 (1404)
+.|..+|... |+.+..+||.+ ++.+++|.++... +|++ |.++++|||++. ..+||+||.|-
T Consensus 345 e~l~~~L~~~--gi~v~~~hg~l-----~~~l~~F~~G~~~--VLVatas~tdv~aRGIDiP~~IryVI~y~vP~~~~~~ 415 (1176)
T PRK09401 345 EELAEYLEDL--GINAELAISGF-----ERKFEKFEEGEVD--VLVGVASYYGVLVRGIDLPERIRYAIFYGVPKFKFSL 415 (1176)
T ss_pred HHHHHHHHHC--CCcEEEEeCcH-----HHHHHHHHCCCCC--EEEEecCCCCceeecCCCCcceeEEEEeCCCCEEEec
Confidence 9999999976 89999999998 3356999877665 6666 689999999998 89999999997
Q ss_pred -CHhHHHHHHHhhhcc
Q 042857 1171 -NPHADIQAMNRAHRI 1185 (1404)
Q Consensus 1171 -NP~~d~QAigRahRi 1185 (1404)
....+..+++|.-.+
T Consensus 416 ~~~~~~~~~~~r~~~~ 431 (1176)
T PRK09401 416 EEELAPPFLLLRLLSL 431 (1176)
T ss_pred cccccCHHHHHHHHhh
Confidence 566677788887543
No 85
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.64 E-value=2.9e-14 Score=176.17 Aligned_cols=94 Identities=19% Similarity=0.264 Sum_probs=80.1
Q ss_pred HHHHHHHHhhhcCCceEEEEeCCCCHHHH--HHHHHHHhcCCCceEEEeecccccccccccCCCEEEEEcCCC---C---
Q 042857 1100 LDILEDYLNIEFGPKTYERVDGSVSVGDR--QAAITRFNQDKSRFVFLLSTRSCGLGINLATADTVIIYDSDF---N--- 1171 (1404)
Q Consensus 1100 LDiLed~L~~~f~g~~y~rLdGs~s~~eR--q~~Id~Fn~~~s~~VfLLSTrAgG~GINL~~AdtVIi~DsdW---N--- 1171 (1404)
.+.+++.|...|++..+.++|+.++...+ +++++.|.+++.. +|+.|...+.|+|++.++.|+++|.|- .
T Consensus 271 te~~~e~l~~~fp~~~v~~~d~d~~~~~~~~~~~l~~f~~g~~~--ILVgT~~i~kG~d~~~v~lV~vl~aD~~l~~pd~ 348 (505)
T TIGR00595 271 TEQVEEELAKLFPGARIARIDSDTTSRKGAHEALLNQFANGKAD--ILIGTQMIAKGHHFPNVTLVGVLDADSGLHSPDF 348 (505)
T ss_pred HHHHHHHHHhhCCCCcEEEEecccccCccHHHHHHHHHhcCCCC--EEEeCcccccCCCCCcccEEEEEcCcccccCccc
Confidence 58888999988999999999999987666 8999999876555 899999999999999999999888763 2
Q ss_pred ------HhHHHHHHHhhhccCCCCcEEEEE
Q 042857 1172 ------PHADIQAMNRAHRIGQSKRLLVYR 1195 (1404)
Q Consensus 1172 ------P~~d~QAigRahRiGQ~k~V~VYr 1195 (1404)
.+.+.|+.||++|.+....|.|..
T Consensus 349 ra~E~~~~ll~q~~GRagR~~~~g~viiqt 378 (505)
T TIGR00595 349 RAAERGFQLLTQVAGRAGRAEDPGQVIIQT 378 (505)
T ss_pred chHHHHHHHHHHHHhccCCCCCCCEEEEEe
Confidence 367999999999988877776543
No 86
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.63 E-value=3.8e-15 Score=169.49 Aligned_cols=316 Identities=20% Similarity=0.269 Sum_probs=208.5
Q ss_pred CCCHHHHHHHHHHHHhhccCCcEEEEcCCCchHHHHHHHH--HH---HHH-hhccCCCcEEEEeCCCCh-HHHHHHHHHH
Q 042857 755 ALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAF--IS---SLY-CEFKAKLPCLVLVPLSTM-PNWLAEFALW 827 (1404)
Q Consensus 755 ~L~pyQlegVnwL~~~~~~~~~~ILADEMGLGKTiqaIa~--L~---~L~-~~~~~~gP~LIVvP~Sll-~nW~rEf~kw 827 (1404)
+..|.|-.+---++ +|..+|-...+|.|||+..+.- +. ... .+......+||+.|..-| .+-+-|..++
T Consensus 242 KPtPIqSQaWPI~L----QG~DliGVAQTgtgKtL~~L~pg~ihi~aqp~~~~qr~~p~~lvl~ptreLalqie~e~~ky 317 (629)
T KOG0336|consen 242 KPTPIQSQAWPILL----QGIDLIGVAQTGTGKTLAFLLPGFIHIDAQPKRREQRNGPGVLVLTPTRELALQIEGEVKKY 317 (629)
T ss_pred CCCcchhcccceee----cCcceEEEEecCCCcCHHHhccceeeeeccchhhhccCCCceEEEeccHHHHHHHHhHHhHh
Confidence 45666665533233 4899999999999999876532 11 111 112222347888998766 5666666655
Q ss_pred -CCCCcEEEEecchhHHHHHHHhhhccCCCCccccccCCCCceEEEeeHHHHHhh--hccccCCCceEEEEccccccCC-
Q 042857 828 -APNLNVVEYHGCAKARAIIRQYEWHASDPDNLNKKTSSYKFNVLLTTYEMILAD--SSHLRGVPWEVLVVDEGHRLKN- 903 (1404)
Q Consensus 828 -~P~l~Vvvy~G~~~~R~~ir~~E~~~~~~~~~~~~~~~~kfdVvITTYe~l~~d--~~~L~~i~w~lVIVDEAHrlKN- 903 (1404)
+..+..++++|....-..+.+.. .+.+++|.|+..|.+- ...+.-....+||+|||.++..
T Consensus 318 syng~ksvc~ygggnR~eqie~lk---------------rgveiiiatPgrlndL~~~n~i~l~siTYlVlDEADrMLDM 382 (629)
T KOG0336|consen 318 SYNGLKSVCVYGGGNRNEQIEDLK---------------RGVEIIIATPGRLNDLQMDNVINLASITYLVLDEADRMLDM 382 (629)
T ss_pred hhcCcceEEEecCCCchhHHHHHh---------------cCceEEeeCCchHhhhhhcCeeeeeeeEEEEecchhhhhcc
Confidence 34566666666555444554432 3678999999888653 2233333467999999999965
Q ss_pred -CccHHHHHHhhcccccEEEEeccCCCCChHHHHHHhhhhCCCCCCChhHHHHHhccccchHHHHHHHHhhhhhhhhhhH
Q 042857 904 -SGSKLFSLLNSFSFQHRVLLTGTPLQNNIGEMYNLLNFLQPASFPSLSSFEEKFNDLTTTQKVEELKKLVAPHMLRRLK 982 (1404)
Q Consensus 904 -~~Sk~~~~L~~l~~~~rLLLTGTPlqNnl~EL~sLL~fL~P~~f~s~~~F~~~f~d~~~~~~i~~L~~lL~p~mLRR~K 982 (1404)
...++.+.|..++..+...||..-. |.-+||+.
T Consensus 383 gFEpqIrkilldiRPDRqtvmTSATW----------------------------------------------P~~VrrLa 416 (629)
T KOG0336|consen 383 GFEPQIRKILLDIRPDRQTVMTSATW----------------------------------------------PEGVRRLA 416 (629)
T ss_pred cccHHHHHHhhhcCCcceeeeecccC----------------------------------------------chHHHHHH
Confidence 5578889999998887766654321 12223322
Q ss_pred hhhhhcCCCceEEEEEec---CCHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCcH
Q 042857 983 KDAMQNIPPKTERMVPVE---LSSIQAEYYRAMLTKNYQILRNIGKGVAQQSMLNIVMQLRKVCNHPYLIPGTEPDSGSV 1059 (1404)
Q Consensus 983 ~dV~~~LPpk~e~iV~V~---LS~~Qk~~Y~~il~~n~~~L~~~~kg~~~~sllnilm~LRK~cnHP~L~~~~e~~~~~~ 1059 (1404)
...+++ ..+++|. |... +... +. +++
T Consensus 417 ~sY~Ke-----p~~v~vGsLdL~a~--------------------~sVk-Q~---------------i~v---------- 445 (629)
T KOG0336|consen 417 QSYLKE-----PMIVYVGSLDLVAV--------------------KSVK-QN---------------IIV---------- 445 (629)
T ss_pred HHhhhC-----ceEEEecccceeee--------------------eeee-ee---------------EEe----------
Confidence 222211 1122221 1100 0000 00 000
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHcCCeEEEEecchhHHHHHHHHHhhhcCCceEEEEeCCCCHHHHHHHHHHHhcCC
Q 042857 1060 EFLHEMRIKASAKLTLLHSMLKVLYKEGHRVLIFSQMTKLLDILEDYLNIEFGPKTYERVDGSVSVGDRQAAITRFNQDK 1139 (1404)
Q Consensus 1060 e~l~~~~i~~SgKl~~L~kLL~kl~~~G~KVLIFSq~~~~LDiLed~L~~~f~g~~y~rLdGs~s~~eRq~~Id~Fn~~~ 1139 (1404)
...+.|+..+..++..+ ....|||||+...-+.|-|..-|... |+....|||.-.+.+|+.++..|..+.
T Consensus 446 -------~~d~~k~~~~~~f~~~m-s~ndKvIiFv~~K~~AD~LSSd~~l~--gi~~q~lHG~r~Q~DrE~al~~~ksG~ 515 (629)
T KOG0336|consen 446 -------TTDSEKLEIVQFFVANM-SSNDKVIIFVSRKVMADHLSSDFCLK--GISSQSLHGNREQSDREMALEDFKSGE 515 (629)
T ss_pred -------cccHHHHHHHHHHHHhc-CCCceEEEEEechhhhhhccchhhhc--ccchhhccCChhhhhHHHHHHhhhcCc
Confidence 11244554444444433 45789999999999999998777644 899999999999999999999997655
Q ss_pred CceEEEeecccccccccccCCCEEEEEcCCCCHhHHHHHHHhhhccCCCCcEEEEEEeeCC
Q 042857 1140 SRFVFLLSTRSCGLGINLATADTVIIYDSDFNPHADIQAMNRAHRIGQSKRLLVYRLVVRA 1200 (1404)
Q Consensus 1140 s~~VfLLSTrAgG~GINL~~AdtVIi~DsdWNP~~d~QAigRahRiGQ~k~V~VYrLvt~~ 1200 (1404)
-. +|++|..+++||+++...+|+.||.|-|-..|++++||.+|.|.+..-. -|++.+
T Consensus 516 vr--ILvaTDlaSRGlDv~DiTHV~NyDFP~nIeeYVHRvGrtGRaGr~G~si--s~lt~~ 572 (629)
T KOG0336|consen 516 VR--ILVATDLASRGLDVPDITHVYNYDFPRNIEEYVHRVGRTGRAGRTGTSI--SFLTRN 572 (629)
T ss_pred eE--EEEEechhhcCCCchhcceeeccCCCccHHHHHHHhcccccCCCCcceE--EEEehh
Confidence 44 9999999999999999999999999999999999999999999866533 344444
No 87
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.61 E-value=2.7e-14 Score=166.26 Aligned_cols=321 Identities=21% Similarity=0.288 Sum_probs=216.7
Q ss_pred CCCHHHHHHHHHHHHhhccCCcEEEEcCCCchHHHHHHHHHH-HHHhh---ccCCCcE-EEEeCCCCh-HHHHHHHHHHC
Q 042857 755 ALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFIS-SLYCE---FKAKLPC-LVLVPLSTM-PNWLAEFALWA 828 (1404)
Q Consensus 755 ~L~pyQlegVnwL~~~~~~~~~~ILADEMGLGKTiqaIa~L~-~L~~~---~~~~gP~-LIVvP~Sll-~nW~rEf~kw~ 828 (1404)
+.+|.|-.+|--.+. ++.+|-..-+|.|||...|.-+. +...+ ....+|+ ||+||+.-+ .|-..|.++|.
T Consensus 245 kptpiq~qalptals----grdvigIAktgSgktaAfi~pm~~himdq~eL~~g~gPi~vilvPTrela~Qi~~eaKkf~ 320 (731)
T KOG0339|consen 245 KPTPIQCQALPTALS----GRDVIGIAKTGSGKTAAFIWPMIVHIMDQPELKPGEGPIGVILVPTRELASQIFSEAKKFG 320 (731)
T ss_pred cCCcccccccccccc----cccchheeeccCcchhHHHHHHHHHhcchhhhcCCCCCeEEEEeccHHHHHHHHHHHHHhh
Confidence 345556666544333 67777677899999976554332 22211 2356787 566787655 78889999884
Q ss_pred --CCCcEEEEecchhHHHHHHHhhhccCCCCccccccCCCCceEEEeeHHHHHhhh--ccccCCCceEEEEccccccCCC
Q 042857 829 --PNLNVVEYHGCAKARAIIRQYEWHASDPDNLNKKTSSYKFNVLLTTYEMILADS--SHLRGVPWEVLVVDEGHRLKNS 904 (1404)
Q Consensus 829 --P~l~Vvvy~G~~~~R~~ir~~E~~~~~~~~~~~~~~~~kfdVvITTYe~l~~d~--~~L~~i~w~lVIVDEAHrlKN~ 904 (1404)
-+++++..||+...-.++..+. ....+||.|++.++... ....-.+..+||+|||.||-.-
T Consensus 321 K~ygl~~v~~ygGgsk~eQ~k~Lk---------------~g~EivVaTPgRlid~VkmKatn~~rvS~LV~DEadrmfdm 385 (731)
T KOG0339|consen 321 KAYGLRVVAVYGGGSKWEQSKELK---------------EGAEIVVATPGRLIDMVKMKATNLSRVSYLVLDEADRMFDM 385 (731)
T ss_pred hhccceEEEeecCCcHHHHHHhhh---------------cCCeEEEechHHHHHHHHhhcccceeeeEEEEechhhhhcc
Confidence 3788888888766555554432 35679999999987643 2223345679999999999653
Q ss_pred --ccHHHHHHhhccccc-EEEEeccCCCCChHHHHHHhhhhCCCCCCChhHHHHHhccccchHHHHHHHHhhhhhhhhhh
Q 042857 905 --GSKLFSLLNSFSFQH-RVLLTGTPLQNNIGEMYNLLNFLQPASFPSLSSFEEKFNDLTTTQKVEELKKLVAPHMLRRL 981 (1404)
Q Consensus 905 --~Sk~~~~L~~l~~~~-rLLLTGTPlqNnl~EL~sLL~fL~P~~f~s~~~F~~~f~d~~~~~~i~~L~~lL~p~mLRR~ 981 (1404)
..+...+...++..+ .|++++|- . ..+..|
T Consensus 386 Gfe~qVrSI~~hirpdrQtllFsaTf--------------------------~---------~kIe~l------------ 418 (731)
T KOG0339|consen 386 GFEPQVRSIKQHIRPDRQTLLFSATF--------------------------K---------KKIEKL------------ 418 (731)
T ss_pred ccHHHHHHHHhhcCCcceEEEeeccc--------------------------h---------HHHHHH------------
Confidence 344445555565544 47788872 1 111111
Q ss_pred HhhhhhcCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCcHHH
Q 042857 982 KKDAMQNIPPKTERMVPVELSSIQAEYYRAMLTKNYQILRNIGKGVAQQSMLNIVMQLRKVCNHPYLIPGTEPDSGSVEF 1061 (1404)
Q Consensus 982 K~dV~~~LPpk~e~iV~V~LS~~Qk~~Y~~il~~n~~~L~~~~kg~~~~sllnilm~LRK~cnHP~L~~~~e~~~~~~e~ 1061 (1404)
..+++.+ |. .+|..++... |. -+.+.--+|
T Consensus 419 ard~L~d--pV--rvVqg~vgea-----------n~-----------------dITQ~V~V~------------------ 448 (731)
T KOG0339|consen 419 ARDILSD--PV--RVVQGEVGEA-----------NE-----------------DITQTVSVC------------------ 448 (731)
T ss_pred HHHHhcC--Ce--eEEEeehhcc-----------cc-----------------chhheeeec------------------
Confidence 1222211 11 1121111100 00 000000011
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHcCCeEEEEecchhHHHHHHHHHhhhcCCceEEEEeCCCCHHHHHHHHHHHhcCCCc
Q 042857 1062 LHEMRIKASAKLTLLHSMLKVLYKEGHRVLIFSQMTKLLDILEDYLNIEFGPKTYERVDGSVSVGDRQAAITRFNQDKSR 1141 (1404)
Q Consensus 1062 l~~~~i~~SgKl~~L~kLL~kl~~~G~KVLIFSq~~~~LDiLed~L~~~f~g~~y~rLdGs~s~~eRq~~Id~Fn~~~s~ 1141 (1404)
...-.|+..|.+-|......| +||||+.-....+-|...|..+ ++.+..++|++.+.+|.+.|..|......
T Consensus 449 -----~s~~~Kl~wl~~~L~~f~S~g-kvlifVTKk~~~e~i~a~Lklk--~~~v~llhgdkdqa~rn~~ls~fKkk~~~ 520 (731)
T KOG0339|consen 449 -----PSEEKKLNWLLRHLVEFSSEG-KVLIFVTKKADAEEIAANLKLK--GFNVSLLHGDKDQAERNEVLSKFKKKRKP 520 (731)
T ss_pred -----cCcHHHHHHHHHHhhhhccCC-cEEEEEeccCCHHHHHHHhccc--cceeeeecCchhhHHHHHHHHHHhhcCCc
Confidence 012357777777777776666 7999999888899999999866 89999999999999999999999876666
Q ss_pred eEEEeecccccccccccCCCEEEEEcCCCCHhHHHHHHHhhhccCCCCcEEEEEEeeCCCHH
Q 042857 1142 FVFLLSTRSCGLGINLATADTVIIYDSDFNPHADIQAMNRAHRIGQSKRLLVYRLVVRASVE 1203 (1404)
Q Consensus 1142 ~VfLLSTrAgG~GINL~~AdtVIi~DsdWNP~~d~QAigRahRiGQ~k~V~VYrLvt~~TvE 1203 (1404)
+|+.|.+..+|+++....|||+||.--.-..+.|++||.+|-|.+ -..|.|||....+
T Consensus 521 --VlvatDvaargldI~~ikTVvnyD~ardIdththrigrtgRag~k--GvayTlvTeKDa~ 578 (731)
T KOG0339|consen 521 --VLVATDVAARGLDIPSIKTVVNYDFARDIDTHTHRIGRTGRAGEK--GVAYTLVTEKDAE 578 (731)
T ss_pred --eEEEeeHhhcCCCccccceeecccccchhHHHHHHhhhccccccc--ceeeEEechhhHH
Confidence 899999999999999999999999999999999999999999986 3468999986554
No 88
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.61 E-value=2.7e-15 Score=150.50 Aligned_cols=120 Identities=31% Similarity=0.468 Sum_probs=109.9
Q ss_pred hHHHHHHHHHHHHHHcCCeEEEEecchhHHHHHHHHHhhhcCCceEEEEeCCCCHHHHHHHHHHHhcCCCceEEEeeccc
Q 042857 1071 AKLTLLHSMLKVLYKEGHRVLIFSQMTKLLDILEDYLNIEFGPKTYERVDGSVSVGDRQAAITRFNQDKSRFVFLLSTRS 1150 (1404)
Q Consensus 1071 gKl~~L~kLL~kl~~~G~KVLIFSq~~~~LDiLed~L~~~f~g~~y~rLdGs~s~~eRq~~Id~Fn~~~s~~VfLLSTrA 1150 (1404)
.|+..+..++......+.++|||++....++.+.++|... +..+..++|+++..+|..+++.|+.+. ..+|++|.+
T Consensus 12 ~k~~~i~~~i~~~~~~~~~~lvf~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~f~~~~--~~ili~t~~ 87 (131)
T cd00079 12 EKLEALLELLKEHLKKGGKVLIFCPSKKMLDELAELLRKP--GIKVAALHGDGSQEEREEVLKDFREGE--IVVLVATDV 87 (131)
T ss_pred HHHHHHHHHHHhcccCCCcEEEEeCcHHHHHHHHHHHHhc--CCcEEEEECCCCHHHHHHHHHHHHcCC--CcEEEEcCh
Confidence 6888899998887767899999999999999999999864 678999999999999999999998766 458889999
Q ss_pred ccccccccCCCEEEEEcCCCCHhHHHHHHHhhhccCCCCcEEEE
Q 042857 1151 CGLGINLATADTVIIYDSDFNPHADIQAMNRAHRIGQSKRLLVY 1194 (1404)
Q Consensus 1151 gG~GINL~~AdtVIi~DsdWNP~~d~QAigRahRiGQ~k~V~VY 1194 (1404)
+|+|+|++.+++||+++++|++..+.|++||++|.||.+.|.+|
T Consensus 88 ~~~G~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~~~~ 131 (131)
T cd00079 88 IARGIDLPNVSVVINYDLPWSPSSYLQRIGRAGRAGQKGTAILL 131 (131)
T ss_pred hhcCcChhhCCEEEEeCCCCCHHHheecccccccCCCCceEEeC
Confidence 99999999999999999999999999999999999998887764
No 89
>COG1204 Superfamily II helicase [General function prediction only]
Probab=99.59 E-value=3.9e-14 Score=180.89 Aligned_cols=310 Identities=24% Similarity=0.222 Sum_probs=189.7
Q ss_pred CCCHHHHHHHHHHHHhhccCCcEEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEeCCCCh-HHHHHHHHHHC-CCCc
Q 042857 755 ALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLSTM-PNWLAEFALWA-PNLN 832 (1404)
Q Consensus 755 ~L~pyQlegVnwL~~~~~~~~~~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP~Sll-~nW~rEf~kw~-P~l~ 832 (1404)
+|+|.|.++|.-.+. .+.|+|++..+|.|||+.|..+|.....++ .++++-|||+.-| .+=.++|.+|. -+++
T Consensus 31 el~~~qq~av~~~~~---~~~N~li~aPTgsGKTlIA~lai~~~l~~~--~~k~vYivPlkALa~Ek~~~~~~~~~~Gir 105 (766)
T COG1204 31 ELFNPQQEAVEKGLL---SDENVLISAPTGSGKTLIALLAILSTLLEG--GGKVVYIVPLKALAEEKYEEFSRLEELGIR 105 (766)
T ss_pred HhhHHHHHHhhcccc---CCCcEEEEcCCCCchHHHHHHHHHHHHHhc--CCcEEEEeChHHHHHHHHHHhhhHHhcCCE
Confidence 799999999976544 289999999999999999988887765543 5689999998654 77788888443 2799
Q ss_pred EEEEecchhHHHHHHHhhhccCCCCccccccCCCCceEEEeeHHHHHhhhccc--cCCCceEEEEccccccCCC--ccH-
Q 042857 833 VVEYHGCAKARAIIRQYEWHASDPDNLNKKTSSYKFNVLLTTYEMILADSSHL--RGVPWEVLVVDEGHRLKNS--GSK- 907 (1404)
Q Consensus 833 Vvvy~G~~~~R~~ir~~E~~~~~~~~~~~~~~~~kfdVvITTYe~l~~d~~~L--~~i~w~lVIVDEAHrlKN~--~Sk- 907 (1404)
|.+++|+..... ....+.+|+|||||.+-.-.... --...++|||||+|.+... +.-
T Consensus 106 V~~~TgD~~~~~------------------~~l~~~~ViVtT~EK~Dsl~R~~~~~~~~V~lvViDEiH~l~d~~RG~~l 167 (766)
T COG1204 106 VGISTGDYDLDD------------------ERLARYDVIVTTPEKLDSLTRKRPSWIEEVDLVVIDEIHLLGDRTRGPVL 167 (766)
T ss_pred EEEecCCcccch------------------hhhccCCEEEEchHHhhHhhhcCcchhhcccEEEEeeeeecCCcccCcee
Confidence 999999765432 12347799999999875321111 1234679999999999754 111
Q ss_pred --HHHHHhhccc-ccEEEEeccCCCCChHHHHHHhhhhCCCCCCChhHHHHHhccccchHHHHHHHHhhhhhhhhhhHhh
Q 042857 908 --LFSLLNSFSF-QHRVLLTGTPLQNNIGEMYNLLNFLQPASFPSLSSFEEKFNDLTTTQKVEELKKLVAPHMLRRLKKD 984 (1404)
Q Consensus 908 --~~~~L~~l~~-~~rLLLTGTPlqNnl~EL~sLL~fL~P~~f~s~~~F~~~f~d~~~~~~i~~L~~lL~p~mLRR~K~d 984 (1404)
+...++.+.. -+.++||||- .|..|+-. ||+-..+.+.- .|.-++|
T Consensus 168 E~iv~r~~~~~~~~rivgLSATl--pN~~evA~---wL~a~~~~~~~----------------------rp~~l~~---- 216 (766)
T COG1204 168 ESIVARMRRLNELIRIVGLSATL--PNAEEVAD---WLNAKLVESDW----------------------RPVPLRR---- 216 (766)
T ss_pred hhHHHHHHhhCcceEEEEEeeec--CCHHHHHH---HhCCcccccCC----------------------CCccccc----
Confidence 2222223333 3557799994 34444433 33322221111 1111111
Q ss_pred hhhcCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCcHHHHHH
Q 042857 985 AMQNIPPKTERMVPVELSSIQAEYYRAMLTKNYQILRNIGKGVAQQSMLNIVMQLRKVCNHPYLIPGTEPDSGSVEFLHE 1064 (1404)
Q Consensus 985 V~~~LPpk~e~iV~V~LS~~Qk~~Y~~il~~n~~~L~~~~kg~~~~sllnilm~LRK~cnHP~L~~~~e~~~~~~e~l~~ 1064 (1404)
..|..... ....-...
T Consensus 217 ---~v~~~~~~-~~~~~~~k------------------------------------------------------------ 232 (766)
T COG1204 217 ---GVPYVGAF-LGADGKKK------------------------------------------------------------ 232 (766)
T ss_pred ---CCccceEE-EEecCccc------------------------------------------------------------
Confidence 01100000 00000000
Q ss_pred HHHhhhhHHHHHHHHHHHHHHcCCeEEEEecchhHHHHHHHHHhhh----c-----C-----------------------
Q 042857 1065 MRIKASAKLTLLHSMLKVLYKEGHRVLIFSQMTKLLDILEDYLNIE----F-----G----------------------- 1112 (1404)
Q Consensus 1065 ~~i~~SgKl~~L~kLL~kl~~~G~KVLIFSq~~~~LDiLed~L~~~----f-----~----------------------- 1112 (1404)
.....+...+..++....+.|..||||++...........|... + .
T Consensus 233 --~~~~~~~~~~~~~v~~~~~~~~qvLvFv~sR~~a~~~A~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~l~ 310 (766)
T COG1204 233 --TWPLLIDNLALELVLESLAEGGQVLVFVHSRKEAEKTAKKLRIKMSATLSDDEKIVLDEGASPILIPETPTSEDEELA 310 (766)
T ss_pred --cccccchHHHHHHHHHHHhcCCeEEEEEecCchHHHHHHHHHHHHhhcCChhhhhhccccccccccccccccchHHHH
Confidence 00001112233344445556667777777654333333222210 0 0
Q ss_pred ---CceEEEEeCCCCHHHHHHHHHHHhcCCCceEEEeecccccccccccCCCEEEEEcC-CC---------CHhHHHHHH
Q 042857 1113 ---PKTYERVDGSVSVGDRQAAITRFNQDKSRFVFLLSTRSCGLGINLATADTVIIYDS-DF---------NPHADIQAM 1179 (1404)
Q Consensus 1113 ---g~~y~rLdGs~s~~eRq~~Id~Fn~~~s~~VfLLSTrAgG~GINL~~AdtVIi~Ds-dW---------NP~~d~QAi 1179 (1404)
...+..-|.+++..+|+-+=+.|+.+.-. +|+||.....|+||+ |++|||-|. .| ++..++|-+
T Consensus 311 e~v~~GvafHhAGL~~~~R~~vE~~Fr~g~ik--Vlv~TpTLA~GVNLP-A~~VIIk~~~~y~~~~g~~~i~~~dv~QM~ 387 (766)
T COG1204 311 ELVLRGVAFHHAGLPREDRQLVEDAFRKGKIK--VLVSTPTLAAGVNLP-ARTVIIKDTRRYDPKGGIVDIPVLDVLQMA 387 (766)
T ss_pred HHHHhCccccccCCCHHHHHHHHHHHhcCCce--EEEechHHhhhcCCc-ceEEEEeeeEEEcCCCCeEECchhhHhhcc
Confidence 01134457889999999999999876655 889999999999998 788887654 23 578899999
Q ss_pred HhhhccCC
Q 042857 1180 NRAHRIGQ 1187 (1404)
Q Consensus 1180 gRahRiGQ 1187 (1404)
|||+|.|=
T Consensus 388 GRAGRPg~ 395 (766)
T COG1204 388 GRAGRPGY 395 (766)
T ss_pred CcCCCCCc
Confidence 99999984
No 90
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.59 E-value=1.8e-12 Score=146.30 Aligned_cols=309 Identities=19% Similarity=0.221 Sum_probs=206.9
Q ss_pred CCCCCCHHHHHHHHHHHHhhccCCcEEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEeCC-CChHHHHHHHHHHCCC
Q 042857 752 KGGALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPL-STMPNWLAEFALWAPN 830 (1404)
Q Consensus 752 ~g~~L~pyQlegVnwL~~~~~~~~~~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP~-Sll~nW~rEf~kw~P~ 830 (1404)
-+|+|.|+|..+-+.+++.|.+....|+..-+|.|||-+....+...+. .++.+.|..|- .++-.-...++.-+++
T Consensus 94 W~G~Ls~~Q~~as~~l~q~i~~k~~~lv~AV~GaGKTEMif~~i~~al~---~G~~vciASPRvDVclEl~~Rlk~aF~~ 170 (441)
T COG4098 94 WKGTLSPGQKKASNQLVQYIKQKEDTLVWAVTGAGKTEMIFQGIEQALN---QGGRVCIASPRVDVCLELYPRLKQAFSN 170 (441)
T ss_pred eccccChhHHHHHHHHHHHHHhcCcEEEEEecCCCchhhhHHHHHHHHh---cCCeEEEecCcccchHHHHHHHHHhhcc
Confidence 3689999999999999999999999999999999999988887777653 45678888886 4556666777777888
Q ss_pred CcEEEEecchhHHHHHHHhhhccCCCCccccccCCCCce-EEEeeHHHHHhhhccccCCCceEEEEccccccCC-CccHH
Q 042857 831 LNVVEYHGCAKARAIIRQYEWHASDPDNLNKKTSSYKFN-VLLTTYEMILADSSHLRGVPWEVLVVDEGHRLKN-SGSKL 908 (1404)
Q Consensus 831 l~Vvvy~G~~~~R~~ir~~E~~~~~~~~~~~~~~~~kfd-VvITTYe~l~~d~~~L~~i~w~lVIVDEAHrlKN-~~Sk~ 908 (1404)
..+...||..... ...+ ||-||++.+. ... .||+|||||.+-+== .+-.+
T Consensus 171 ~~I~~Lyg~S~~~----------------------fr~plvVaTtHQLlr-Fk~-----aFD~liIDEVDAFP~~~d~~L 222 (441)
T COG4098 171 CDIDLLYGDSDSY----------------------FRAPLVVATTHQLLR-FKQ-----AFDLLIIDEVDAFPFSDDQSL 222 (441)
T ss_pred CCeeeEecCCchh----------------------ccccEEEEehHHHHH-HHh-----hccEEEEeccccccccCCHHH
Confidence 8888888865432 1123 4555555554 322 379999999988632 22334
Q ss_pred HHHHhhcc--cccEEEEeccCCCCChHHHHHHhhhhCCCCCCChhHHHHHhccccchHHHHHHHHhhhhh-hhhhhHhhh
Q 042857 909 FSLLNSFS--FQHRVLLTGTPLQNNIGEMYNLLNFLQPASFPSLSSFEEKFNDLTTTQKVEELKKLVAPH-MLRRLKKDA 985 (1404)
Q Consensus 909 ~~~L~~l~--~~~rLLLTGTPlqNnl~EL~sLL~fL~P~~f~s~~~F~~~f~d~~~~~~i~~L~~lL~p~-mLRR~K~dV 985 (1404)
..+++.-. ....++|||||-.. | .... ++.-+.+. +=+|.-.
T Consensus 223 ~~Av~~ark~~g~~IylTATp~k~----l------------------~r~~-----------~~g~~~~~klp~RfH~-- 267 (441)
T COG4098 223 QYAVKKARKKEGATIYLTATPTKK----L------------------ERKI-----------LKGNLRILKLPARFHG-- 267 (441)
T ss_pred HHHHHHhhcccCceEEEecCChHH----H------------------HHHh-----------hhCCeeEeecchhhcC--
Confidence 45554443 44579999999211 0 0000 00000000 0011110
Q ss_pred hhcCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCcHHHHHHH
Q 042857 986 MQNIPPKTERMVPVELSSIQAEYYRAMLTKNYQILRNIGKGVAQQSMLNIVMQLRKVCNHPYLIPGTEPDSGSVEFLHEM 1065 (1404)
Q Consensus 986 ~~~LPpk~e~iV~V~LS~~Qk~~Y~~il~~n~~~L~~~~kg~~~~sllnilm~LRK~cnHP~L~~~~e~~~~~~e~l~~~ 1065 (1404)
+.||-....++ ...- +.+
T Consensus 268 -~pLpvPkf~w~----~~~~----------------------------k~l----------------------------- 285 (441)
T COG4098 268 -KPLPVPKFVWI----GNWN----------------------------KKL----------------------------- 285 (441)
T ss_pred -CCCCCCceEEe----ccHH----------------------------HHh-----------------------------
Confidence 11222222111 0000 000
Q ss_pred HHhhhhHHH-HHHHHHHHHHHcCCeEEEEecchhHHHHHHHHHhhhcCCceEEEEeCCCCHHHHHHHHHHHhcCCCceEE
Q 042857 1066 RIKASAKLT-LLHSMLKVLYKEGHRVLIFSQMTKLLDILEDYLNIEFGPKTYERVDGSVSVGDRQAAITRFNQDKSRFVF 1144 (1404)
Q Consensus 1066 ~i~~SgKl~-~L~kLL~kl~~~G~KVLIFSq~~~~LDiLed~L~~~f~g~~y~rLdGs~s~~eRq~~Id~Fn~~~s~~Vf 1144 (1404)
.-+|+. .|...|++....|..+|||...+.+++-+...|...++......++... ..|.+.+.+|+++.-. +
T Consensus 286 ---~r~kl~~kl~~~lekq~~~~~P~liF~p~I~~~eq~a~~lk~~~~~~~i~~Vhs~d--~~R~EkV~~fR~G~~~--l 358 (441)
T COG4098 286 ---QRNKLPLKLKRWLEKQRKTGRPVLIFFPEIETMEQVAAALKKKLPKETIASVHSED--QHRKEKVEAFRDGKIT--L 358 (441)
T ss_pred ---hhccCCHHHHHHHHHHHhcCCcEEEEecchHHHHHHHHHHHhhCCccceeeeeccC--ccHHHHHHHHHcCceE--E
Confidence 011222 3566777788889999999999999999999997766655555566543 5799999999876655 9
Q ss_pred EeecccccccccccCCCEEEEEcCC--CCHhHHHHHHHhhhccCC--CCcEEEEE
Q 042857 1145 LLSTRSCGLGINLATADTVIIYDSD--FNPHADIQAMNRAHRIGQ--SKRLLVYR 1195 (1404)
Q Consensus 1145 LLSTrAgG~GINL~~AdtVIi~Dsd--WNP~~d~QAigRahRiGQ--~k~V~VYr 1195 (1404)
|++|....+|+.++..|++++=.-. ++-+..+|--||++|--. +..|..|.
T Consensus 359 LiTTTILERGVTfp~vdV~Vlgaeh~vfTesaLVQIaGRvGRs~~~PtGdv~FFH 413 (441)
T COG4098 359 LITTTILERGVTFPNVDVFVLGAEHRVFTESALVQIAGRVGRSLERPTGDVLFFH 413 (441)
T ss_pred EEEeehhhcccccccceEEEecCCcccccHHHHHHHhhhccCCCcCCCCcEEEEe
Confidence 9999999999999999998886544 899999999999999654 33444443
No 91
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=99.59 E-value=4.6e-14 Score=187.66 Aligned_cols=280 Identities=13% Similarity=0.186 Sum_probs=174.8
Q ss_pred CCCCCHHHHHHHHHHHHhhccCCcEEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEeCCCCh-HHHHHHHHHHCCCC
Q 042857 753 GGALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLSTM-PNWLAEFALWAPNL 831 (1404)
Q Consensus 753 g~~L~pyQlegVnwL~~~~~~~~~~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP~Sll-~nW~rEf~kw~P~l 831 (1404)
|..++|+|..++..++. |.+.++...+|.|||.-++.++..+.. ....+|||+|+..| .|+..+|..++..+
T Consensus 76 g~~p~~iQ~~~i~~il~----G~d~vi~ApTGsGKT~f~l~~~~~l~~---~g~~vLIL~PTreLa~Qi~~~l~~l~~~~ 148 (1171)
T TIGR01054 76 GSEPWSIQKMWAKRVLR----GDSFAIIAPTGVGKTTFGLAMSLFLAK---KGKRCYIILPTTLLVIQVAEKISSLAEKA 148 (1171)
T ss_pred CCCCcHHHHHHHHHHhC----CCeEEEECCCCCCHHHHHHHHHHHHHh---cCCeEEEEeCHHHHHHHHHHHHHHHHHhc
Confidence 45799999998877665 889999999999999755544444322 23579999999766 88999999987543
Q ss_pred --c---EEEEecchhHHHHHHHhhhccCCCCccccccCCCCceEEEeeHHHHHhhhccccCCCceEEEEccccccCCCcc
Q 042857 832 --N---VVEYHGCAKARAIIRQYEWHASDPDNLNKKTSSYKFNVLLTTYEMILADSSHLRGVPWEVLVVDEGHRLKNSGS 906 (1404)
Q Consensus 832 --~---Vvvy~G~~~~R~~ir~~E~~~~~~~~~~~~~~~~kfdVvITTYe~l~~d~~~L~~i~w~lVIVDEAHrlKN~~S 906 (1404)
. ++.|+|...........+. .....++|+|+|+..+......+.. +++++||||||++-....
T Consensus 149 ~i~~~~i~~~~Gg~~~~e~~~~~~~-----------l~~~~~dIlV~Tp~rL~~~~~~l~~-~~~~iVvDEaD~~L~~~k 216 (1171)
T TIGR01054 149 GVGTVNIGAYHSRLPTKEKKEFMER-----------IENGDFDILITTTMFLSKNYDELGP-KFDFIFVDDVDALLKASK 216 (1171)
T ss_pred CCceeeeeeecCCCCHHHHHHHHHH-----------HhcCCCCEEEECHHHHHHHHHHhcC-CCCEEEEeChHhhhhccc
Confidence 3 2357776543322111110 1123589999999999876665554 799999999999865211
Q ss_pred H--------------HHHHH----------------------hhccccc---EEEEeccCCCCChHHHHHHhhhhCCCCC
Q 042857 907 K--------------LFSLL----------------------NSFSFQH---RVLLTGTPLQNNIGEMYNLLNFLQPASF 947 (1404)
Q Consensus 907 k--------------~~~~L----------------------~~l~~~~---rLLLTGTPlqNnl~EL~sLL~fL~P~~f 947 (1404)
. +..++ ..+.... .++.|||+........+ + ...+
T Consensus 217 ~vd~il~llGF~~e~i~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~li~~SAT~~p~~~~~~l--~----r~ll 290 (1171)
T TIGR01054 217 NVDKLLKLLGFSEELIEKAWKLIRLRLKLYRALHAKKRLELLEAIPGKKRGCLIVSSATGRPRGKRAKL--F----RELL 290 (1171)
T ss_pred cHHHHHHHcCCCHHHHHHHHHHhhhccccchHHHHHHHHHHHHhhhhccCcEEEEEeCCCCccccHHHH--c----cccc
Confidence 0 11111 1111111 23468885443222100 0 0000
Q ss_pred CChhHHHHHhccccchHHHHHHHHhhhhhhhhhhHhhhhhcCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHhhccch
Q 042857 948 PSLSSFEEKFNDLTTTQKVEELKKLVAPHMLRRLKKDAMQNIPPKTERMVPVELSSIQAEYYRAMLTKNYQILRNIGKGV 1027 (1404)
Q Consensus 948 ~s~~~F~~~f~d~~~~~~i~~L~~lL~p~mLRR~K~dV~~~LPpk~e~iV~V~LS~~Qk~~Y~~il~~n~~~L~~~~kg~ 1027 (1404)
.| -+.+ ....+
T Consensus 291 ----~~-----------------------~v~~----~~~~~-------------------------------------- 301 (1171)
T TIGR01054 291 ----GF-----------------------EVGG----GSDTL-------------------------------------- 301 (1171)
T ss_pred ----ce-----------------------EecC----ccccc--------------------------------------
Confidence 00 0000 00000
Q ss_pred hhHHHHHHHHHHHHHhCCCCCCCCCCCCCCcHHHHHHHHHhhhhHHHHHHHHHHHHHHcCCeEEEEecch---hHHHHHH
Q 042857 1028 AQQSMLNIVMQLRKVCNHPYLIPGTEPDSGSVEFLHEMRIKASAKLTLLHSMLKVLYKEGHRVLIFSQMT---KLLDILE 1104 (1404)
Q Consensus 1028 ~~~sllnilm~LRK~cnHP~L~~~~e~~~~~~e~l~~~~i~~SgKl~~L~kLL~kl~~~G~KVLIFSq~~---~~LDiLe 1104 (1404)
|.+ .|.|+.. ..+...|.++|..+ |..+|||++.. ..++.|.
T Consensus 302 ------------r~I-~~~~~~~-------------------~~~~~~L~~ll~~l---~~~~IVFv~t~~~~~~a~~l~ 346 (1171)
T TIGR01054 302 ------------RNV-VDVYVED-------------------EDLKETLLEIVKKL---GTGGIVYVSIDYGKEKAEEIA 346 (1171)
T ss_pred ------------cce-EEEEEec-------------------ccHHHHHHHHHHHc---CCCEEEEEeccccHHHHHHHH
Confidence 000 0111100 00112234444433 56799999998 8999999
Q ss_pred HHHhhhcCCceEEEEeCCCCHHHHHHHHHHHhcCCCceEEEee----cccccccccccC-CCEEEEEcCC
Q 042857 1105 DYLNIEFGPKTYERVDGSVSVGDRQAAITRFNQDKSRFVFLLS----TRSCGLGINLAT-ADTVIIYDSD 1169 (1404)
Q Consensus 1105 d~L~~~f~g~~y~rLdGs~s~~eRq~~Id~Fn~~~s~~VfLLS----TrAgG~GINL~~-AdtVIi~Dsd 1169 (1404)
.+|... |+.+..+||.++ +.+++.|.++... +|++ |..+++|||++. .++||+||.|
T Consensus 347 ~~L~~~--g~~a~~lhg~~~----~~~l~~Fr~G~~~--vLVata~~tdv~aRGIDip~~V~~vI~~~~P 408 (1171)
T TIGR01054 347 EFLENH--GVKAVAYHATKP----KEDYEKFAEGEID--VLIGVASYYGTLVRGLDLPERVRYAVFLGVP 408 (1171)
T ss_pred HHHHhC--CceEEEEeCCCC----HHHHHHHHcCCCC--EEEEeccccCcccccCCCCccccEEEEECCC
Confidence 999876 789999999986 4789999876655 6666 589999999998 7999999987
No 92
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.58 E-value=8.8e-14 Score=157.85 Aligned_cols=316 Identities=20% Similarity=0.254 Sum_probs=193.4
Q ss_pred CHHHHHHHHHHHHhhccCCcEEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEeCCCCh-HHHHHHHHHHCCCCcEEE
Q 042857 757 FPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLSTM-PNWLAEFALWAPNLNVVE 835 (1404)
Q Consensus 757 ~pyQlegVnwL~~~~~~~~~~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP~Sll-~nW~rEf~kw~P~l~Vvv 835 (1404)
...|..++-.|+. ....|.|-...-|.|||......+.+.........-++-++|..-+ .|-.+-|.+...-..+..
T Consensus 114 skIQe~aLPlll~--~Pp~nlIaQsqsGtGKTaaFvL~MLsrvd~~~~~PQ~iCLaPtrELA~Q~~eVv~eMGKf~~ita 191 (477)
T KOG0332|consen 114 SKIQETALPLLLA--EPPQNLIAQSQSGTGKTAAFVLTMLSRVDPDVVVPQCICLAPTRELAPQTGEVVEEMGKFTELTA 191 (477)
T ss_pred chHHHhhcchhhc--CCchhhhhhhcCCCchhHHHHHHHHHhcCccccCCCceeeCchHHHHHHHHHHHHHhcCceeeeE
Confidence 3456666655433 4556777788899999976554444433222222225666898765 444444554432112222
Q ss_pred EecchhHHHHHHHhhhccCCCCccccccCCCCceEEEeeHHHHHhhhccccCC---CceEEEEccccccCCCc---cHHH
Q 042857 836 YHGCAKARAIIRQYEWHASDPDNLNKKTSSYKFNVLLTTYEMILADSSHLRGV---PWEVLVVDEGHRLKNSG---SKLF 909 (1404)
Q Consensus 836 y~G~~~~R~~ir~~E~~~~~~~~~~~~~~~~kfdVvITTYe~l~~d~~~L~~i---~w~lVIVDEAHrlKN~~---Sk~~ 909 (1404)
-++-+.. ...+.....-+|+|.|...+.+....|..+ ...++|+|||..+-+.. -...
T Consensus 192 ~yair~s----------------k~~rG~~i~eqIviGTPGtv~Dlm~klk~id~~kikvfVlDEAD~Mi~tqG~~D~S~ 255 (477)
T KOG0332|consen 192 SYAIRGS----------------KAKRGNKLTEQIVIGTPGTVLDLMLKLKCIDLEKIKVFVLDEADVMIDTQGFQDQSI 255 (477)
T ss_pred EEEecCc----------------ccccCCcchhheeeCCCccHHHHHHHHHhhChhhceEEEecchhhhhhcccccccch
Confidence 2211111 012233445689999999998876554433 46799999999987644 2233
Q ss_pred HHHhhcc-cccEEEEeccCCCCChHHHHHHhhhhCCCCCCChhHHHHHhccccchHHHHHHHHhhhhhhhhhhHhhhhhc
Q 042857 910 SLLNSFS-FQHRVLLTGTPLQNNIGEMYNLLNFLQPASFPSLSSFEEKFNDLTTTQKVEELKKLVAPHMLRRLKKDAMQN 988 (1404)
Q Consensus 910 ~~L~~l~-~~~rLLLTGTPlqNnl~EL~sLL~fL~P~~f~s~~~F~~~f~d~~~~~~i~~L~~lL~p~mLRR~K~dV~~~ 988 (1404)
+..+.+. ....++.|+|-. .....|...+-.- -.+.+|||- + ..
T Consensus 256 rI~~~lP~~~QllLFSATf~-------------------e~V~~Fa~kivpn------------~n~i~Lk~e--e--l~ 300 (477)
T KOG0332|consen 256 RIMRSLPRNQQLLLFSATFV-------------------EKVAAFALKIVPN------------ANVIILKRE--E--LA 300 (477)
T ss_pred hhhhhcCCcceEEeeechhH-------------------HHHHHHHHHhcCC------------Cceeeeehh--h--cc
Confidence 4444454 445577888720 0011111111000 001111110 0 01
Q ss_pred CCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCcHHHHHHHHHh
Q 042857 989 IPPKTERMVPVELSSIQAEYYRAMLTKNYQILRNIGKGVAQQSMLNIVMQLRKVCNHPYLIPGTEPDSGSVEFLHEMRIK 1068 (1404)
Q Consensus 989 LPpk~e~iV~V~LS~~Qk~~Y~~il~~n~~~L~~~~kg~~~~sllnilm~LRK~cnHP~L~~~~e~~~~~~e~l~~~~i~ 1068 (1404)
|++...+.+. |.+
T Consensus 301 L~~IkQlyv~--------------------------------------------C~~----------------------- 313 (477)
T KOG0332|consen 301 LDNIKQLYVL--------------------------------------------CAC----------------------- 313 (477)
T ss_pred ccchhhheee--------------------------------------------ccc-----------------------
Confidence 2222222221 211
Q ss_pred hhhHHHHHHHHHHHHHHcCCeEEEEecchhHHHHHHHHHhhhcCCceEEEEeCCCCHHHHHHHHHHHhcCCCceEEEeec
Q 042857 1069 ASAKLTLLHSMLKVLYKEGHRVLIFSQMTKLLDILEDYLNIEFGPKTYERVDGSVSVGDRQAAITRFNQDKSRFVFLLST 1148 (1404)
Q Consensus 1069 ~SgKl~~L~kLL~kl~~~G~KVLIFSq~~~~LDiLed~L~~~f~g~~y~rLdGs~s~~eRq~~Id~Fn~~~s~~VfLLST 1148 (1404)
...|+.+|..+ -.+..-| ..||||+.......|..-|... |+.+..++|.+...+|..+|++|+.+... +||+|
T Consensus 314 ~~~K~~~l~~l-yg~~tig-qsiIFc~tk~ta~~l~~~m~~~--Gh~V~~l~G~l~~~~R~~ii~~Fr~g~~k--VLitT 387 (477)
T KOG0332|consen 314 RDDKYQALVNL-YGLLTIG-QSIIFCHTKATAMWLYEEMRAE--GHQVSLLHGDLTVEQRAAIIDRFREGKEK--VLITT 387 (477)
T ss_pred hhhHHHHHHHH-Hhhhhhh-heEEEEeehhhHHHHHHHHHhc--CceeEEeeccchhHHHHHHHHHHhcCcce--EEEEe
Confidence 12455555552 2233333 5799999999999999999987 89999999999999999999999987776 89999
Q ss_pred ccccccccccCCCEEEEEcCCC------CHhHHHHHHHhhhccCCCCcEEEEEEeeCC
Q 042857 1149 RSCGLGINLATADTVIIYDSDF------NPHADIQAMNRAHRIGQSKRLLVYRLVVRA 1200 (1404)
Q Consensus 1149 rAgG~GINL~~AdtVIi~DsdW------NP~~d~QAigRahRiGQ~k~V~VYrLvt~~ 1200 (1404)
.++.+||+.+..+.||.||.|- .|..|++|+||++|+|.+.- ++.|+-.+
T Consensus 388 nV~ARGiDv~qVs~VvNydlP~~~~~~pD~etYlHRiGRtGRFGkkG~--a~n~v~~~ 443 (477)
T KOG0332|consen 388 NVCARGIDVAQVSVVVNYDLPVKYTGEPDYETYLHRIGRTGRFGKKGL--AINLVDDK 443 (477)
T ss_pred chhhcccccceEEEEEecCCccccCCCCCHHHHHHHhcccccccccce--EEEeeccc
Confidence 9999999999999999999873 78999999999999996443 34455443
No 93
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.57 E-value=4.2e-15 Score=165.17 Aligned_cols=311 Identities=19% Similarity=0.243 Sum_probs=205.3
Q ss_pred CHHHHHHHHHHHHhhccCCcEEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEeCCCCh----HHHHHHHHHHCCCCc
Q 042857 757 FPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLSTM----PNWLAEFALWAPNLN 832 (1404)
Q Consensus 757 ~pyQlegVnwL~~~~~~~~~~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP~Sll----~nW~rEf~kw~P~l~ 832 (1404)
.|.|.+++--.+. |++.+.-.--|.|||...+.-+...+......--.+|+||..-+ .|-..++.+.. ++.
T Consensus 109 SPiQeesIPiaLt----GrdiLaRaKNGTGKT~a~~IP~Lekid~~~~~IQ~~ilVPtrelALQtSqvc~~lskh~-~i~ 183 (459)
T KOG0326|consen 109 SPIQEESIPIALT----GRDILARAKNGTGKTAAYCIPVLEKIDPKKNVIQAIILVPTRELALQTSQVCKELSKHL-GIK 183 (459)
T ss_pred CCccccccceeec----chhhhhhccCCCCCccceechhhhhcCccccceeEEEEeecchhhHHHHHHHHHHhccc-CeE
Confidence 3445555433222 44444445679999987666555554433334457999998755 67778888877 588
Q ss_pred EEEEecchhHHHHHHHhhhccCCCCccccccCCCCceEEEeeHHHHHhhhc--cccCCCceEEEEccccccCCCc--cHH
Q 042857 833 VVEYHGCAKARAIIRQYEWHASDPDNLNKKTSSYKFNVLLTTYEMILADSS--HLRGVPWEVLVVDEGHRLKNSG--SKL 908 (1404)
Q Consensus 833 Vvvy~G~~~~R~~ir~~E~~~~~~~~~~~~~~~~kfdVvITTYe~l~~d~~--~L~~i~w~lVIVDEAHrlKN~~--Sk~ 908 (1404)
|.+-.|+...|.-|-.. ....|++|.|+..+..-.. .-.--+..++|+|||..|.... ...
T Consensus 184 vmvttGGT~lrDDI~Rl---------------~~~VH~~vgTPGRIlDL~~KgVa~ls~c~~lV~DEADKlLs~~F~~~~ 248 (459)
T KOG0326|consen 184 VMVTTGGTSLRDDIMRL---------------NQTVHLVVGTPGRILDLAKKGVADLSDCVILVMDEADKLLSVDFQPIV 248 (459)
T ss_pred EEEecCCcccccceeee---------------cCceEEEEcCChhHHHHHhcccccchhceEEEechhhhhhchhhhhHH
Confidence 88888877666432111 1367999999998876321 1111245689999999997543 234
Q ss_pred HHHHhhcccc-cEEEEeccCCCCChHHHHHHhhhhCCCCCCChhHHHHHhccccchHHHHHHHHhhhhhhhhhhHhhhhh
Q 042857 909 FSLLNSFSFQ-HRVLLTGTPLQNNIGEMYNLLNFLQPASFPSLSSFEEKFNDLTTTQKVEELKKLVAPHMLRRLKKDAMQ 987 (1404)
Q Consensus 909 ~~~L~~l~~~-~rLLLTGTPlqNnl~EL~sLL~fL~P~~f~s~~~F~~~f~d~~~~~~i~~L~~lL~p~mLRR~K~dV~~ 987 (1404)
.+.+.-+... ..+|.|||- .. ....|...|- -.|+.+
T Consensus 249 e~li~~lP~~rQillySATF-P~------------------tVk~Fm~~~l--------------~kPy~I--------- 286 (459)
T KOG0326|consen 249 EKLISFLPKERQILLYSATF-PL------------------TVKGFMDRHL--------------KKPYEI--------- 286 (459)
T ss_pred HHHHHhCCccceeeEEeccc-ch------------------hHHHHHHHhc--------------cCccee---------
Confidence 4555555433 345677772 11 1122222221 011111
Q ss_pred cCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCcHHHHHHHHH
Q 042857 988 NIPPKTERMVPVELSSIQAEYYRAMLTKNYQILRNIGKGVAQQSMLNIVMQLRKVCNHPYLIPGTEPDSGSVEFLHEMRI 1067 (1404)
Q Consensus 988 ~LPpk~e~iV~V~LS~~Qk~~Y~~il~~n~~~L~~~~kg~~~~sllnilm~LRK~cnHP~L~~~~e~~~~~~e~l~~~~i 1067 (1404)
.+.-+|+..--..|-+ .+
T Consensus 287 --------NLM~eLtl~GvtQyYa------------------------------------------------------fV 304 (459)
T KOG0326|consen 287 --------NLMEELTLKGVTQYYA------------------------------------------------------FV 304 (459)
T ss_pred --------ehhhhhhhcchhhhee------------------------------------------------------ee
Confidence 1111111111001100 12
Q ss_pred hhhhHHHHHHHHHHHHHHcCCeEEEEecchhHHHHHHHHHhhhcCCceEEEEeCCCCHHHHHHHHHHHhcCCCceEEEee
Q 042857 1068 KASAKLTLLHSMLKVLYKEGHRVLIFSQMTKLLDILEDYLNIEFGPKTYERVDGSVSVGDRQAAITRFNQDKSRFVFLLS 1147 (1404)
Q Consensus 1068 ~~SgKl~~L~kLL~kl~~~G~KVLIFSq~~~~LDiLed~L~~~f~g~~y~rLdGs~s~~eRq~~Id~Fn~~~s~~VfLLS 1147 (1404)
..+-|+..|.-++.+|.= ...||||+.+...++|..-+... ||.+..+|..|.++.|......|+++... .|++
T Consensus 305 ~e~qKvhCLntLfskLqI--NQsIIFCNS~~rVELLAkKITel--GyscyyiHakM~Q~hRNrVFHdFr~G~cr--nLVc 378 (459)
T KOG0326|consen 305 EERQKVHCLNTLFSKLQI--NQSIIFCNSTNRVELLAKKITEL--GYSCYYIHAKMAQEHRNRVFHDFRNGKCR--NLVC 378 (459)
T ss_pred chhhhhhhHHHHHHHhcc--cceEEEeccchHhHHHHHHHHhc--cchhhHHHHHHHHhhhhhhhhhhhccccc--eeee
Confidence 335566666666666533 36899999999999999999876 88999999999999999999999987766 7899
Q ss_pred cccccccccccCCCEEEEEcCCCCHhHHHHHHHhhhccCCCCcEEEEEEeeC
Q 042857 1148 TRSCGLGINLATADTVIIYDSDFNPHADIQAMNRAHRIGQSKRLLVYRLVVR 1199 (1404)
Q Consensus 1148 TrAgG~GINL~~AdtVIi~DsdWNP~~d~QAigRahRiGQ~k~V~VYrLvt~ 1199 (1404)
|...-+||++++.+.||.||.+-|+..|++++||.+|+|--. ....|||-
T Consensus 379 tDL~TRGIDiqavNvVINFDfpk~aEtYLHRIGRsGRFGhlG--lAInLity 428 (459)
T KOG0326|consen 379 TDLFTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHLG--LAINLITY 428 (459)
T ss_pred hhhhhcccccceeeEEEecCCCCCHHHHHHHccCCccCCCcc--eEEEEEeh
Confidence 999999999999999999999999999999999999999632 34556654
No 94
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.57 E-value=1.5e-13 Score=177.29 Aligned_cols=111 Identities=20% Similarity=0.242 Sum_probs=92.8
Q ss_pred cCCeEEEEecchhHHHHHHHHHhhhc-CCceEEEEeCCCCHHHHHHHHHHHhcCCCceEEEeecccccccccccCCCEEE
Q 042857 1086 EGHRVLIFSQMTKLLDILEDYLNIEF-GPKTYERVDGSVSVGDRQAAITRFNQDKSRFVFLLSTRSCGLGINLATADTVI 1164 (1404)
Q Consensus 1086 ~G~KVLIFSq~~~~LDiLed~L~~~f-~g~~y~rLdGs~s~~eRq~~Id~Fn~~~s~~VfLLSTrAgG~GINL~~AdtVI 1164 (1404)
.+..+|||++....++.+..+|...+ .++.+..+||+++..+|+++++.|..+.. -+|++|..++.||++..+++||
T Consensus 208 ~~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~v~pLHg~L~~~eq~~~~~~~~~G~r--kVlVATnIAErgItIp~V~~VI 285 (819)
T TIGR01970 208 ETGSILVFLPGQAEIRRVQEQLAERLDSDVLICPLYGELSLAAQDRAIKPDPQGRR--KVVLATNIAETSLTIEGIRVVI 285 (819)
T ss_pred cCCcEEEEECCHHHHHHHHHHHHhhcCCCcEEEEecCCCCHHHHHHHHhhcccCCe--EEEEecchHhhcccccCceEEE
Confidence 35689999999999999999887643 36788899999999999999999965443 4889999999999999999999
Q ss_pred EEcCC----CCHhH--------------HHHHHHhhhccCCCCcEEEEEEeeCCC
Q 042857 1165 IYDSD----FNPHA--------------DIQAMNRAHRIGQSKRLLVYRLVVRAS 1201 (1404)
Q Consensus 1165 i~Dsd----WNP~~--------------d~QAigRahRiGQ~k~V~VYrLvt~~T 1201 (1404)
.++.. |||.. +.||.||++|. ++=.+|+|+++..
T Consensus 286 D~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRAGR~---~~G~cyrL~t~~~ 337 (819)
T TIGR01970 286 DSGLARVARFDPKTGITRLETVRISQASATQRAGRAGRL---EPGVCYRLWSEEQ 337 (819)
T ss_pred EcCcccccccccccCCceeeEEEECHHHHHhhhhhcCCC---CCCEEEEeCCHHH
Confidence 99875 56665 78999999997 3556899988653
No 95
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.57 E-value=2.1e-13 Score=172.91 Aligned_cols=391 Identities=15% Similarity=0.138 Sum_probs=223.9
Q ss_pred CCCCCHHHHHHHHHHHHhhccCCcEEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEeCCCCh----HHHHHHHHHHC
Q 042857 753 GGALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLSTM----PNWLAEFALWA 828 (1404)
Q Consensus 753 g~~L~pyQlegVnwL~~~~~~~~~~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP~Sll----~nW~rEf~kw~ 828 (1404)
|...++-|+-|---| ..|-|.-..+|.|||+++...+...... ...++||+|+.-| .+|...|-.|+
T Consensus 80 g~~~ydvQliGg~~L------h~G~Iaem~TGeGKTL~a~Lpa~~~al~---G~~V~VvTpn~yLA~qd~e~m~~l~~~l 150 (896)
T PRK13104 80 GLRHFDVQLIGGMVL------HEGNIAEMRTGEGKTLVATLPAYLNAIS---GRGVHIVTVNDYLAKRDSQWMKPIYEFL 150 (896)
T ss_pred CCCcchHHHhhhhhh------ccCccccccCCCCchHHHHHHHHHHHhc---CCCEEEEcCCHHHHHHHHHHHHHHhccc
Confidence 456778888887544 3577888899999999877655533322 2358999999877 45666666666
Q ss_pred CCCcEEEEecchhHHHHHHHhhhccCCCCccccccCCCCceEEEeeHHHH----Hhhhcccc-----CCCceEEEEcccc
Q 042857 829 PNLNVVEYHGCAKARAIIRQYEWHASDPDNLNKKTSSYKFNVLLTTYEMI----LADSSHLR-----GVPWEVLVVDEGH 899 (1404)
Q Consensus 829 P~l~Vvvy~G~~~~R~~ir~~E~~~~~~~~~~~~~~~~kfdVvITTYe~l----~~d~~~L~-----~i~w~lVIVDEAH 899 (1404)
++.+.+..|+......... +..||+++|...+ .++.-.+. .-.+.++||||++
T Consensus 151 -GLtv~~i~gg~~~~~r~~~-----------------y~~dIvygT~grlgfDyLrd~~~~~~~~~v~r~l~~~IvDEaD 212 (896)
T PRK13104 151 -GLTVGVIYPDMSHKEKQEA-----------------YKADIVYGTNNEYGFDYLRDNMAFSLTDKVQRELNFAIVDEVD 212 (896)
T ss_pred -CceEEEEeCCCCHHHHHHH-----------------hCCCEEEECChhhhHHHHhcCCccchHhhhccccceEEeccHh
Confidence 6888888876544332222 2568999999887 33321111 1367899999999
Q ss_pred ccCCCccHHHHHHhhcccccEEEEeccCCCCChHHHHHHhh----hhCCC-------CCC------------ChhHHHHH
Q 042857 900 RLKNSGSKLFSLLNSFSFQHRVLLTGTPLQNNIGEMYNLLN----FLQPA-------SFP------------SLSSFEEK 956 (1404)
Q Consensus 900 rlKN~~Sk~~~~L~~l~~~~rLLLTGTPlqNnl~EL~sLL~----fL~P~-------~f~------------s~~~F~~~ 956 (1404)
++--.. ++.-|++||.+- .. .++|..++ -|.++ .|. ....+.+.
T Consensus 213 siLIDe-----------ArtPLIISg~~~-~~-~~~y~~~~~~v~~l~~~~~~~~~~dy~idek~~~v~Lte~G~~~~e~ 279 (896)
T PRK13104 213 SILIDE-----------ARTPLIISGAAE-DS-SELYIKINSLIPQLKKQEEEGDEGDYTIDEKQKQAHLTDAGHLHIEE 279 (896)
T ss_pred hhhhhc-----------cCCceeeeCCCc-cc-hHHHHHHHHHHHHHHhccccCCCCCEEEEcCCCceEEchHHHHHHHH
Confidence 884322 244577787543 22 34443333 33332 010 00011111
Q ss_pred hc----------cccchHH---HHHHHHhhhhh-hhhhhHhhhhhcCCCceEEEEEecCCH-------HHHHHHHHHHHH
Q 042857 957 FN----------DLTTTQK---VEELKKLVAPH-MLRRLKKDAMQNIPPKTERMVPVELSS-------IQAEYYRAMLTK 1015 (1404)
Q Consensus 957 f~----------d~~~~~~---i~~L~~lL~p~-mLRR~K~dV~~~LPpk~e~iV~V~LS~-------~Qk~~Y~~il~~ 1015 (1404)
|. .+..... ...+...|+.+ ++.|-+.-+.. .....+|- +.|- .+.-+.++|-.+
T Consensus 280 ~~~~~~il~~~~~l~~~~~~~~~~~i~~aL~A~~lf~~d~dYiV~---dg~V~iVD-e~TGR~m~grr~s~GLHQaiEaK 355 (896)
T PRK13104 280 LLTKAKLLDPGESLYHASNIMLMHHVNAALKAHAMFHRDIDYIVK---DNQVVIVD-EHTGRTMPGRRWSEGLHQAVEAK 355 (896)
T ss_pred HHHhCCccCCcccccCchhhhHHHHHHHHHHHHHHhcCCCceEEE---CCEEEEEE-CCCCCcCCCCCcChHHHHHHHHH
Confidence 10 0001111 11222222222 22222222211 11111111 1111 011111111111
Q ss_pred HHHHHHhhccchhhHHHHHH-----------------HHHHHHHhCCCCCC-CCCCCCCCcHHHHHHHHHhhhhHHHHHH
Q 042857 1016 NYQILRNIGKGVAQQSMLNI-----------------VMQLRKVCNHPYLI-PGTEPDSGSVEFLHEMRIKASAKLTLLH 1077 (1404)
Q Consensus 1016 n~~~L~~~~kg~~~~sllni-----------------lm~LRK~cnHP~L~-~~~e~~~~~~e~l~~~~i~~SgKl~~L~ 1077 (1404)
.--.+.......+...+.|. -.++.++.+-+.+. |...|.. -.+.-.........|+.++.
T Consensus 356 E~v~i~~e~~t~AsIT~Qn~Fr~Y~kLsGMTGTa~te~~Ef~~iY~l~Vv~IPtnkp~~-R~d~~d~v~~t~~~k~~av~ 434 (896)
T PRK13104 356 EGVPIQNENQTLASITFQNFFRMYNKLSGMTGTADTEAYEFQQIYNLEVVVIPTNRSMI-RKDEADLVYLTQADKFQAII 434 (896)
T ss_pred cCCCCCCCceeeeeehHHHHHHhcchhccCCCCChhHHHHHHHHhCCCEEECCCCCCcc-eecCCCeEEcCHHHHHHHHH
Confidence 00000000000011111121 23344444433332 1111100 00000001123467999999
Q ss_pred HHHHHHHHcCCeEEEEecchhHHHHHHHHHhhhcCCceEEEEeCCCCHHHHHHHHHHHhcCCCceEEEeecccccccccc
Q 042857 1078 SMLKVLYKEGHRVLIFSQMTKLLDILEDYLNIEFGPKTYERVDGSVSVGDRQAAITRFNQDKSRFVFLLSTRSCGLGINL 1157 (1404)
Q Consensus 1078 kLL~kl~~~G~KVLIFSq~~~~LDiLed~L~~~f~g~~y~rLdGs~s~~eRq~~Id~Fn~~~s~~VfLLSTrAgG~GINL 1157 (1404)
+.+..+.+.|..||||+......+.|..+|... |+++..|+|.....+|+.+.++|+.+. ++|+|..+|+|+++
T Consensus 435 ~~i~~~~~~g~PVLVgt~Sie~sE~ls~~L~~~--gi~h~vLnak~~q~Ea~iia~Ag~~G~----VtIATNmAGRGtDI 508 (896)
T PRK13104 435 EDVRECGVRKQPVLVGTVSIEASEFLSQLLKKE--NIKHQVLNAKFHEKEAQIIAEAGRPGA----VTIATNMAGRGTDI 508 (896)
T ss_pred HHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHc--CCCeEeecCCCChHHHHHHHhCCCCCc----EEEeccCccCCcce
Confidence 999999999999999999999999999999987 899999999999999999999997652 89999999999997
Q ss_pred cCC--------------------------------------CEEEEEcCCCCHhHHHHHHHhhhccCCCCcEEEE
Q 042857 1158 ATA--------------------------------------DTVIIYDSDFNPHADIQAMNRAHRIGQSKRLLVY 1194 (1404)
Q Consensus 1158 ~~A--------------------------------------dtVIi~DsdWNP~~d~QAigRahRiGQ~k~V~VY 1194 (1404)
.=. =+||.-...-|-..|.|..||++|.|.......|
T Consensus 509 ~Lggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerhesrRID~QLrGRaGRQGDPGss~f~ 583 (896)
T PRK13104 509 VLGGSLAADLANLPADASEQEKEAVKKEWQKRHDEVIAAGGLRIIGSERHESRRIDNQLRGRAGRQGDPGSSRFY 583 (896)
T ss_pred ecCCchhhhhhccccchhhHHHHHHHHHhhhhhhHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceEEE
Confidence 522 2788888999999999999999999997775544
No 96
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=99.56 E-value=6e-15 Score=156.52 Aligned_cols=164 Identities=23% Similarity=0.319 Sum_probs=110.1
Q ss_pred CCCHHHHHHHHHHHHhhccC---CcEEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEeCC-CChHHHHHHHHHHCCC
Q 042857 755 ALFPHQLEALNWLRKCWHKS---KNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPL-STMPNWLAEFALWAPN 830 (1404)
Q Consensus 755 ~L~pyQlegVnwL~~~~~~~---~~~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP~-Sll~nW~rEf~kw~P~ 830 (1404)
+|+|||.+++.-++..+... .+++|..+||.|||++++.++..+.. ++||+||. +++.||..+|..+.+.
T Consensus 3 ~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~~------~~l~~~p~~~l~~Q~~~~~~~~~~~ 76 (184)
T PF04851_consen 3 KLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELAR------KVLIVAPNISLLEQWYDEFDDFGSE 76 (184)
T ss_dssp EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHHC------EEEEEESSHHHHHHHHHHHHHHSTT
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhcccc------ceeEecCHHHHHHHHHHHHHHhhhh
Confidence 58999999999999887765 88999999999999999998888864 89999998 5669999999888865
Q ss_pred CcEEEEecchhHHHHHHHhhhccCCCCccccccCCCCceEEEeeHHHHHhhhcc-------------ccCCCceEEEEcc
Q 042857 831 LNVVEYHGCAKARAIIRQYEWHASDPDNLNKKTSSYKFNVLLTTYEMILADSSH-------------LRGVPWEVLVVDE 897 (1404)
Q Consensus 831 l~Vvvy~G~~~~R~~ir~~E~~~~~~~~~~~~~~~~kfdVvITTYe~l~~d~~~-------------L~~i~w~lVIVDE 897 (1404)
...+.......... ......................+++++++..+...... +....+++||+||
T Consensus 77 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vI~DE 154 (184)
T PF04851_consen 77 KYNFFEKSIKPAYD--SKEFISIQDDISDKSESDNNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLLKNKFDLVIIDE 154 (184)
T ss_dssp SEEEEE--GGGCCE---SEEETTTTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH---------GCHHGGGGSESEEEEET
T ss_pred hhhhcccccccccc--cccccccccccccccccccccccchhhHHHHHHhhcccccccccchhhhhhhccccCCEEEEeh
Confidence 54443221100000 00000000000000112234678999999999865322 2234688999999
Q ss_pred ccccCCCccHHHHHHhhcccccEEEEeccCC
Q 042857 898 GHRLKNSGSKLFSLLNSFSFQHRVLLTGTPL 928 (1404)
Q Consensus 898 AHrlKN~~Sk~~~~L~~l~~~~rLLLTGTPl 928 (1404)
||++.+... ++.+..+...++|+|||||.
T Consensus 155 aH~~~~~~~--~~~i~~~~~~~~l~lTATp~ 183 (184)
T PF04851_consen 155 AHHYPSDSS--YREIIEFKAAFILGLTATPF 183 (184)
T ss_dssp GGCTHHHHH--HHHHHHSSCCEEEEEESS-S
T ss_pred hhhcCCHHH--HHHHHcCCCCeEEEEEeCcc
Confidence 999964332 55555588889999999995
No 97
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.53 E-value=3.7e-13 Score=166.29 Aligned_cols=357 Identities=15% Similarity=0.158 Sum_probs=217.9
Q ss_pred CCCCCHHHHHHHHHHHHhhccCC-cEEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEeCC-CChHHHHHHHHHHCCC
Q 042857 753 GGALFPHQLEALNWLRKCWHKSK-NVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPL-STMPNWLAEFALWAPN 830 (1404)
Q Consensus 753 g~~L~pyQlegVnwL~~~~~~~~-~~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP~-Sll~nW~rEf~kw~P~ 830 (1404)
...+|+||..+++.+...+.+++ .++|+..+|.|||.+||+++..|++.+.. +++|.++-- +++.|=..+|..+.|+
T Consensus 163 ~i~~RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrTAiaii~rL~r~~~~-KRVLFLaDR~~Lv~QA~~af~~~~P~ 241 (875)
T COG4096 163 AIGPRYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRTAIAIIDRLIKSGWV-KRVLFLADRNALVDQAYGAFEDFLPF 241 (875)
T ss_pred cccchHHHHHHHHHHHHHHhcCCceEEEEEecCCCcceeHHHHHHHHHhcchh-heeeEEechHHHHHHHHHHHHHhCCC
Confidence 35699999999999999998874 57899999999999999999999876554 489999975 5668888899999998
Q ss_pred CcEEEEecchhHHHHHHHhhhccCCCCccccccCCCCceEEEeeHHHHHhhhc-------cccCCCceEEEEccccccCC
Q 042857 831 LNVVEYHGCAKARAIIRQYEWHASDPDNLNKKTSSYKFNVLLTTYEMILADSS-------HLRGVPWEVLVVDEGHRLKN 903 (1404)
Q Consensus 831 l~Vvvy~G~~~~R~~ir~~E~~~~~~~~~~~~~~~~kfdVvITTYe~l~~d~~-------~L~~i~w~lVIVDEAHrlKN 903 (1404)
...+.+.... .....+.|.|.||.++..... .+..-.|++||||||||--
T Consensus 242 ~~~~n~i~~~----------------------~~~~s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlIvIDEaHRgi- 298 (875)
T COG4096 242 GTKMNKIEDK----------------------KGDTSSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLIVIDEAHRGI- 298 (875)
T ss_pred ccceeeeecc----------------------cCCcceeEEEeehHHHHhhhhccccccccCCCCceeEEEechhhhhH-
Confidence 7655443211 112257899999999986432 2334459999999999842
Q ss_pred CccHHHHHHhhcccccEEEEeccCCCCChHHHHHHhhhhCCCCCCChhHHHHHhccccchHHHHHHHHhhhhhhhhhhHh
Q 042857 904 SGSKLFSLLNSFSFQHRVLLTGTPLQNNIGEMYNLLNFLQPASFPSLSSFEEKFNDLTTTQKVEELKKLVAPHMLRRLKK 983 (1404)
Q Consensus 904 ~~Sk~~~~L~~l~~~~rLLLTGTPlqNnl~EL~sLL~fL~P~~f~s~~~F~~~f~d~~~~~~i~~L~~lL~p~mLRR~K~ 983 (1404)
.+.++.+..+-...+++|||||-..--..-|. |.+ +.+... .-++.
T Consensus 299 --~~~~~~I~dYFdA~~~gLTATP~~~~d~~T~~---~F~--------------g~Pt~~---------------Yslee 344 (875)
T COG4096 299 --YSEWSSILDYFDAATQGLTATPKETIDRSTYG---FFN--------------GEPTYA---------------YSLEE 344 (875)
T ss_pred --HhhhHHHHHHHHHHHHhhccCccccccccccc---ccC--------------CCccee---------------ecHHH
Confidence 12233444444456677799995521111111 110 111000 00011
Q ss_pred hhhh-cCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCcHHHH
Q 042857 984 DAMQ-NIPPKTERMVPVELSSIQAEYYRAMLTKNYQILRNIGKGVAQQSMLNIVMQLRKVCNHPYLIPGTEPDSGSVEFL 1062 (1404)
Q Consensus 984 dV~~-~LPpk~e~iV~V~LS~~Qk~~Y~~il~~n~~~L~~~~kg~~~~sllnilm~LRK~cnHP~L~~~~e~~~~~~e~l 1062 (1404)
-|.. .|-|...+.|.+...- +=-.|...-++ ....+ +..+. ++...+.. ++-
T Consensus 345 AV~DGfLvpy~vi~i~~~~~~-~G~~~~~~ser----ek~~g----------------~~i~~----dd~~~~~~--d~d 397 (875)
T COG4096 345 AVEDGFLVPYKVIRIDTDFDL-DGWKPDAGSER----EKLQG----------------EAIDE----DDQNFEAR--DFD 397 (875)
T ss_pred HhhccccCCCCceEEeeeccc-cCcCcCccchh----hhhhc----------------cccCc----cccccccc--ccc
Confidence 1111 1222222222222110 00011111000 00000 00000 00000000 000
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHc---C---CeEEEEecchhHHHHHHHHHhhhcCCce---EEEEeCCCCHHHHHHHHH
Q 042857 1063 HEMRIKASAKLTLLHSMLKVLYKE---G---HRVLIFSQMTKLLDILEDYLNIEFGPKT---YERVDGSVSVGDRQAAIT 1133 (1404)
Q Consensus 1063 ~~~~i~~SgKl~~L~kLL~kl~~~---G---~KVLIFSq~~~~LDiLed~L~~~f~g~~---y~rLdGs~s~~eRq~~Id 1133 (1404)
. .+.--.-...+...|..+... | .|.||||-.....+.|...|...|+.+. +..|+|... +=|..|+
T Consensus 398 r--~~v~~~~~~~V~r~~~~~l~~~~~g~~~~KTIvFa~n~dHAe~i~~~~~~~ype~~~~~a~~IT~d~~--~~q~~Id 473 (875)
T COG4096 398 R--TLVIPFRTETVARELTEYLKRGATGDEIGKTIVFAKNHDHAERIREALVNEYPEYNGRYAMKITGDAE--QAQALID 473 (875)
T ss_pred h--hccccchHHHHHHHHHHHhccccCCCccCceEEEeeCcHHHHHHHHHHHHhCccccCceEEEEeccch--hhHHHHH
Confidence 0 001112234455555555444 3 4899999999999999999988766443 457888654 5567899
Q ss_pred HHhcCCCceEEEeecccccccccccCCCEEEEEcCCCCHhHHHHHHHhhhccC-------CCCc-EEEEEEee
Q 042857 1134 RFNQDKSRFVFLLSTRSCGLGINLATADTVIIYDSDFNPHADIQAMNRAHRIG-------QSKR-LLVYRLVV 1198 (1404)
Q Consensus 1134 ~Fn~~~s~~VfLLSTrAgG~GINL~~AdtVIi~DsdWNP~~d~QAigRahRiG-------Q~k~-V~VYrLvt 1198 (1404)
.|-..+....|.+|...+-.|||.+.+-.++++-.--+-..+.|-+||.-|+- |.|. ..||.++-
T Consensus 474 ~f~~ke~~P~IaitvdlL~TGiDvpev~nlVF~r~VrSktkF~QMvGRGTRl~~~~~~~~~dK~~F~ifDf~~ 546 (875)
T COG4096 474 NFIDKEKYPRIAITVDLLTTGVDVPEVVNLVFDRKVRSKTKFKQMVGRGTRLCPDLGGPEQDKEFFTIFDFVD 546 (875)
T ss_pred HHHhcCCCCceEEehhhhhcCCCchheeeeeehhhhhhHHHHHHHhcCccccCccccCccccceeEEEEEhhh
Confidence 99875544568899999999999999999999999999999999999999952 3333 56666543
No 98
>PRK14701 reverse gyrase; Provisional
Probab=99.51 E-value=9.7e-13 Score=178.51 Aligned_cols=133 Identities=14% Similarity=0.274 Sum_probs=92.5
Q ss_pred CCCCCHHHHHHHHHHHHhhccCCcEEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEeCCCCh-HHHHHHHHHHCC--
Q 042857 753 GGALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLSTM-PNWLAEFALWAP-- 829 (1404)
Q Consensus 753 g~~L~pyQlegVnwL~~~~~~~~~~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP~Sll-~nW~rEf~kw~P-- 829 (1404)
|..++|.|..++..++. +++.++..++|.|||...+.+...+. .....+|||+|+..| .|....|..++.
T Consensus 77 G~~pt~iQ~~~i~~il~----G~d~li~APTGsGKTl~~~~~al~~~---~~g~~aLVl~PTreLa~Qi~~~l~~l~~~~ 149 (1638)
T PRK14701 77 GFEFWSIQKTWAKRILR----GKSFSIVAPTGMGKSTFGAFIALFLA---LKGKKCYIILPTTLLVKQTVEKIESFCEKA 149 (1638)
T ss_pred CCCCCHHHHHHHHHHHc----CCCEEEEEcCCCCHHHHHHHHHHHHH---hcCCeEEEEECHHHHHHHHHHHHHHHHhhc
Confidence 44699999999987766 88999999999999983332222221 122369999999755 789999988764
Q ss_pred --CCcEEEEecchhHHHHHHHhhhccCCCCccccccCCCCceEEEeeHHHHHhhhccccCCCceEEEEccccccCC
Q 042857 830 --NLNVVEYHGCAKARAIIRQYEWHASDPDNLNKKTSSYKFNVLLTTYEMILADSSHLRGVPWEVLVVDEGHRLKN 903 (1404)
Q Consensus 830 --~l~Vvvy~G~~~~R~~ir~~E~~~~~~~~~~~~~~~~kfdVvITTYe~l~~d~~~L~~i~w~lVIVDEAHrlKN 903 (1404)
++++..++|+..........+. .....++|+|+|++.+......+...+++++||||||++-.
T Consensus 150 ~~~v~v~~~~g~~s~~e~~~~~~~-----------l~~g~~dILV~TPgrL~~~~~~l~~~~i~~iVVDEAD~ml~ 214 (1638)
T PRK14701 150 NLDVRLVYYHSNLRKKEKEEFLER-----------IENGDFDILVTTAQFLARNFPEMKHLKFDFIFVDDVDAFLK 214 (1638)
T ss_pred CCceeEEEEeCCCCHHHHHHHHHH-----------HhcCCCCEEEECCchhHHhHHHHhhCCCCEEEEECceeccc
Confidence 3566778887554432221110 11235789999999887654434346789999999999853
No 99
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=99.51 E-value=8.5e-13 Score=170.53 Aligned_cols=112 Identities=18% Similarity=0.224 Sum_probs=92.1
Q ss_pred cCCeEEEEecchhHHHHHHHHHhhhc-CCceEEEEeCCCCHHHHHHHHHHHhcCCCceEEEeecccccccccccCCCEEE
Q 042857 1086 EGHRVLIFSQMTKLLDILEDYLNIEF-GPKTYERVDGSVSVGDRQAAITRFNQDKSRFVFLLSTRSCGLGINLATADTVI 1164 (1404)
Q Consensus 1086 ~G~KVLIFSq~~~~LDiLed~L~~~f-~g~~y~rLdGs~s~~eRq~~Id~Fn~~~s~~VfLLSTrAgG~GINL~~AdtVI 1164 (1404)
.+..+|||+.....++.+.+.|...+ .++.+..+||+++..+|+.++..|..+ ..-+|++|..++.||++..+++||
T Consensus 211 ~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~~v~~Lhg~l~~~eq~~~~~~~~~G--~rkVlvATnIAErsLtIp~V~~VI 288 (812)
T PRK11664 211 ESGSLLLFLPGVGEIQRVQEQLASRVASDVLLCPLYGALSLAEQQKAILPAPAG--RRKVVLATNIAETSLTIEGIRLVV 288 (812)
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHHhccCCceEEEeeCCCCHHHHHHHhccccCC--CeEEEEecchHHhcccccCceEEE
Confidence 45789999999999999999998632 367888999999999999999998654 345899999999999999999999
Q ss_pred EEcCC----CCHh--------------HHHHHHHhhhccCCCCcEEEEEEeeCCCH
Q 042857 1165 IYDSD----FNPH--------------ADIQAMNRAHRIGQSKRLLVYRLVVRASV 1202 (1404)
Q Consensus 1165 i~Dsd----WNP~--------------~d~QAigRahRiGQ~k~V~VYrLvt~~Tv 1202 (1404)
.++.. |+|. .+.||.||++|. .+=.+|||+++...
T Consensus 289 D~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRaGR~---~~G~cyrL~t~~~~ 341 (812)
T PRK11664 289 DSGLERVARFDPKTGLTRLVTQRISQASMTQRAGRAGRL---EPGICLHLYSKEQA 341 (812)
T ss_pred ECCCcccccccccCCcceeEEEeechhhhhhhccccCCC---CCcEEEEecCHHHH
Confidence 97754 3333 688999999887 35678999987544
No 100
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.51 E-value=1.2e-12 Score=166.03 Aligned_cols=387 Identities=17% Similarity=0.161 Sum_probs=220.1
Q ss_pred CCCCCCHHHHHHHHHHHHhhccCCcEEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEeCCCCh----HHHHHHHHHH
Q 042857 752 KGGALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLSTM----PNWLAEFALW 827 (1404)
Q Consensus 752 ~g~~L~pyQlegVnwL~~~~~~~~~~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP~Sll----~nW~rEf~kw 827 (1404)
.|...++-|+-|.--| ..|.|.-..+|-|||+++...++..... . ..+-||+|+..| .+|...+-.+
T Consensus 78 lg~~~~dvQlig~l~L------~~G~Iaem~TGeGKTLva~lpa~l~aL~--G-~~V~IvTpn~yLA~rd~e~~~~l~~~ 148 (830)
T PRK12904 78 LGMRHFDVQLIGGMVL------HEGKIAEMKTGEGKTLVATLPAYLNALT--G-KGVHVVTVNDYLAKRDAEWMGPLYEF 148 (830)
T ss_pred hCCCCCccHHHhhHHh------cCCchhhhhcCCCcHHHHHHHHHHHHHc--C-CCEEEEecCHHHHHHHHHHHHHHHhh
Confidence 3556788898887544 3466888899999999876555322222 2 246699999877 3455555555
Q ss_pred CCCCcEEEEecchhHHHHHHHhhhccCCCCccccccCCCCceEEEeeHHHHHhh----h-----ccccCCCceEEEEccc
Q 042857 828 APNLNVVEYHGCAKARAIIRQYEWHASDPDNLNKKTSSYKFNVLLTTYEMILAD----S-----SHLRGVPWEVLVVDEG 898 (1404)
Q Consensus 828 ~P~l~Vvvy~G~~~~R~~ir~~E~~~~~~~~~~~~~~~~kfdVvITTYe~l~~d----~-----~~L~~i~w~lVIVDEA 898 (1404)
. ++.+.+..|+......... +..+|+++|+..+.-| . ..+..-.+.++||||+
T Consensus 149 L-Glsv~~i~~~~~~~er~~~-----------------y~~dI~ygT~~elgfDyLrd~~~~~~~~~~~r~~~~aIvDEa 210 (830)
T PRK12904 149 L-GLSVGVILSGMSPEERREA-----------------YAADITYGTNNEFGFDYLRDNMVFSLEERVQRGLNYAIVDEV 210 (830)
T ss_pred c-CCeEEEEcCCCCHHHHHHh-----------------cCCCeEEECCcchhhhhhhcccccchhhhcccccceEEEech
Confidence 5 7888888876544432222 2468999998777322 1 1122346789999999
Q ss_pred cccCCCccHHHHHHhhcccccEEEEeccCCCCChHHHHHHhhhhCCCCCCC--h---------------hHHHHHh-c--
Q 042857 899 HRLKNSGSKLFSLLNSFSFQHRVLLTGTPLQNNIGEMYNLLNFLQPASFPS--L---------------SSFEEKF-N-- 958 (1404)
Q Consensus 899 HrlKN~~Sk~~~~L~~l~~~~rLLLTGTPlqNnl~EL~sLL~fL~P~~f~s--~---------------~~F~~~f-~-- 958 (1404)
.++-=.. ++..|++||.+-. ..++|..++-+-+..... + ....+.+ .
T Consensus 211 DsiLIDe-----------ArtpLiiSg~~~~--~~~~y~~~~~~v~~l~~~~dy~vde~~~~v~lte~G~~~~e~~~~~~ 277 (830)
T PRK12904 211 DSILIDE-----------ARTPLIISGPAED--SSELYKRANKIVPTLEKEGDYTVDEKSRTVGLTEEGIEKAEKLLGIE 277 (830)
T ss_pred hhheecc-----------CCCceeeECCCCc--ccHHHHHHHHHHHhcCCCCCeEEEcCCCeeeECHHHHHHHHHHhCCc
Confidence 9874221 2345777776432 234454443332211110 0 0111111 1
Q ss_pred cccchHH---HHHHHHhhhhh-hhhhhHhhhhhcCCCceEEEEEecCCH-------HHHHHHHHHHHH------------
Q 042857 959 DLTTTQK---VEELKKLVAPH-MLRRLKKDAMQNIPPKTERMVPVELSS-------IQAEYYRAMLTK------------ 1015 (1404)
Q Consensus 959 d~~~~~~---i~~L~~lL~p~-mLRR~K~dV~~~LPpk~e~iV~V~LS~-------~Qk~~Y~~il~~------------ 1015 (1404)
.+.+.+. ...+...|..+ ++.|-+.-+.. .....+|- +.|- .+--+.+++-.+
T Consensus 278 ~ly~~~~~~~~~~i~~AL~A~~l~~~d~dYiV~---dg~V~ivD-e~TGR~~~gr~ws~GLHQaiEaKE~v~i~~e~~t~ 353 (830)
T PRK12904 278 NLYDPENIALVHHLNQALRAHELFKRDVDYIVK---DGEVVIVD-EFTGRLMPGRRYSDGLHQAIEAKEGVKIQNENQTL 353 (830)
T ss_pred cccChhhhHHHHHHHHHHHHHHHHhcCCcEEEE---CCEEEEEE-CCCCccCCCCccchHHHHHHHHhcCCCCCCCceee
Confidence 1111111 12222222222 22232222211 11111111 1111 011111111110
Q ss_pred ----------HHHHHHhhccchhhHHHHHHHHHHHHHhCCCCCCCCC-CCCCCcHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 042857 1016 ----------NYQILRNIGKGVAQQSMLNIVMQLRKVCNHPYLIPGT-EPDSGSVEFLHEMRIKASAKLTLLHSMLKVLY 1084 (1404)
Q Consensus 1016 ----------n~~~L~~~~kg~~~~sllnilm~LRK~cnHP~L~~~~-e~~~~~~e~l~~~~i~~SgKl~~L~kLL~kl~ 1084 (1404)
.|..|... .|.. ..-...|+++.+-+.+.-+. .|.. -.+.-.........|+.+|...+..+.
T Consensus 354 a~It~qn~Fr~Y~kl~Gm-TGTa----~te~~E~~~iY~l~vv~IPtnkp~~-r~d~~d~i~~t~~~K~~aI~~~I~~~~ 427 (830)
T PRK12904 354 ASITFQNYFRMYEKLAGM-TGTA----DTEAEEFREIYNLDVVVIPTNRPMI-RIDHPDLIYKTEKEKFDAVVEDIKERH 427 (830)
T ss_pred eeeeHHHHHHhcchhccc-CCCc----HHHHHHHHHHhCCCEEEcCCCCCee-eeeCCCeEEECHHHHHHHHHHHHHHHH
Confidence 01111100 0111 11223455554444332111 1100 000000001134579999999999988
Q ss_pred HcCCeEEEEecchhHHHHHHHHHhhhcCCceEEEEeCCCCHHHHHHHHHHHhcCCCceEEEeecccccccccccCC----
Q 042857 1085 KEGHRVLIFSQMTKLLDILEDYLNIEFGPKTYERVDGSVSVGDRQAAITRFNQDKSRFVFLLSTRSCGLGINLATA---- 1160 (1404)
Q Consensus 1085 ~~G~KVLIFSq~~~~LDiLed~L~~~f~g~~y~rLdGs~s~~eRq~~Id~Fn~~~s~~VfLLSTrAgG~GINL~~A---- 1160 (1404)
..|..|||||......+.|..+|... ++++..|+|. +.+|++.|..|...... ++|+|..+|+|+|+.-.
T Consensus 428 ~~grpVLIft~Si~~se~Ls~~L~~~--gi~~~vLnak--q~eREa~Iia~Ag~~g~--VtIATNmAGRGtDI~LgGn~~ 501 (830)
T PRK12904 428 KKGQPVLVGTVSIEKSELLSKLLKKA--GIPHNVLNAK--NHEREAEIIAQAGRPGA--VTIATNMAGRGTDIKLGGNPE 501 (830)
T ss_pred hcCCCEEEEeCcHHHHHHHHHHHHHC--CCceEeccCc--hHHHHHHHHHhcCCCce--EEEecccccCCcCccCCCchh
Confidence 99999999999999999999999976 8999999995 78999999999755554 89999999999997543
Q ss_pred ----------------------------------CEEEEEcCCCCHhHHHHHHHhhhccCCCCcEEEE
Q 042857 1161 ----------------------------------DTVIIYDSDFNPHADIQAMNRAHRIGQSKRLLVY 1194 (1404)
Q Consensus 1161 ----------------------------------dtVIi~DsdWNP~~d~QAigRahRiGQ~k~V~VY 1194 (1404)
=+||.-..+-|-..+.|..||++|.|+......|
T Consensus 502 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~GGLhVigTerhesrRid~QlrGRagRQGdpGss~f~ 569 (830)
T PRK12904 502 MLAAALLEEETEEQIAKIKAEWQEEHEEVLEAGGLHVIGTERHESRRIDNQLRGRSGRQGDPGSSRFY 569 (830)
T ss_pred hhhhhhhhhhhhHHHHHHHHHHhhhhhhHHHcCCCEEEecccCchHHHHHHhhcccccCCCCCceeEE
Confidence 2788888899999999999999999998776543
No 101
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.50 E-value=6.4e-13 Score=158.98 Aligned_cols=318 Identities=21% Similarity=0.227 Sum_probs=199.8
Q ss_pred CCCHHHHHHHHHHHHhhccCCcEEEEcCCCchHHHHHHHHHHHHHhhcc-----CCCcEEEEeCCCCh-HHHHHHHHHHC
Q 042857 755 ALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFK-----AKLPCLVLVPLSTM-PNWLAEFALWA 828 (1404)
Q Consensus 755 ~L~pyQlegVnwL~~~~~~~~~~ILADEMGLGKTiqaIa~L~~L~~~~~-----~~gP~LIVvP~Sll-~nW~rEf~kw~ 828 (1404)
...|-|..++-.++. +++++-+..+|.|||+..+.-+...+.... .+-..+|+.|...+ .|-.+|+.++.
T Consensus 158 ~Pt~iq~~aipvfl~----~r~~lAcapTGsgKtlaf~~Pil~~L~~~~~~~~~~gl~a~Il~ptreLa~Qi~re~~k~~ 233 (593)
T KOG0344|consen 158 EPTPIQKQAIPVFLE----KRDVLACAPTGSGKTLAFNLPILQHLKDLSQEKHKVGLRALILSPTRELAAQIYREMRKYS 233 (593)
T ss_pred CCCcccchhhhhhhc----ccceEEeccCCCcchhhhhhHHHHHHHHhhcccCccceEEEEecchHHHHHHHHHHHHhcC
Confidence 345677777776665 789999999999999887776655444333 23468999998655 78899998876
Q ss_pred --CC--CcEEEEecchhHHHHHHHhhhccCCCCccccccCCCCceEEEeeHHHHHhhhcc----ccCCCceEEEEccccc
Q 042857 829 --PN--LNVVEYHGCAKARAIIRQYEWHASDPDNLNKKTSSYKFNVLLTTYEMILADSSH----LRGVPWEVLVVDEGHR 900 (1404)
Q Consensus 829 --P~--l~Vvvy~G~~~~R~~ir~~E~~~~~~~~~~~~~~~~kfdVvITTYe~l~~d~~~----L~~i~w~lVIVDEAHr 900 (1404)
+. +.+..+...... ..-.......++++++.|+..+...... +.-.....+|+|||.+
T Consensus 234 ~~~~t~~~a~~~~~~~~~--------------~qk~a~~~~~k~dili~TP~ri~~~~~~~~~~idl~~V~~lV~dEaD~ 299 (593)
T KOG0344|consen 234 IDEGTSLRAAQFSKPAYP--------------SQKPAFLSDEKYDILISTPMRIVGLLGLGKLNIDLSKVEWLVVDEADL 299 (593)
T ss_pred CCCCCchhhhhcccccch--------------hhccchhHHHHHHHHhcCHHHHHHHhcCCCccchhheeeeEeechHHh
Confidence 22 111111111110 0111122335789999999988765432 2223345699999999
Q ss_pred cCCCcc---HHHHHHhhccccc--EEEEeccCCCCChHHHHHHhhhhCCCCCCChhHHHHHhccccchHHHHHHHHhhhh
Q 042857 901 LKNSGS---KLFSLLNSFSFQH--RVLLTGTPLQNNIGEMYNLLNFLQPASFPSLSSFEEKFNDLTTTQKVEELKKLVAP 975 (1404)
Q Consensus 901 lKN~~S---k~~~~L~~l~~~~--rLLLTGTPlqNnl~EL~sLL~fL~P~~f~s~~~F~~~f~d~~~~~~i~~L~~lL~p 975 (1404)
+.+... ++...+.....++ +=++|+| ....++++-.++..
T Consensus 300 lfe~~~f~~Qla~I~sac~s~~i~~a~FSat-----------------------------------~~~~VEE~~~~i~~ 344 (593)
T KOG0344|consen 300 LFEPEFFVEQLADIYSACQSPDIRVALFSAT-----------------------------------ISVYVEEWAELIKS 344 (593)
T ss_pred hhChhhHHHHHHHHHHHhcCcchhhhhhhcc-----------------------------------ccHHHHHHHHHhhc
Confidence 987511 1111111111110 0112221 01112222222211
Q ss_pred hhhhhhHhhhhhcCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHhCCCCCCCCCCCC
Q 042857 976 HMLRRLKKDAMQNIPPKTERMVPVELSSIQAEYYRAMLTKNYQILRNIGKGVAQQSMLNIVMQLRKVCNHPYLIPGTEPD 1055 (1404)
Q Consensus 976 ~mLRR~K~dV~~~LPpk~e~iV~V~LS~~Qk~~Y~~il~~n~~~L~~~~kg~~~~sllnilm~LRK~cnHP~L~~~~e~~ 1055 (1404)
.. ..|.|...+.+ +..+...|+-|
T Consensus 345 ~~-----------------~~vivg~~~sa--------------------------~~~V~QelvF~------------- 368 (593)
T KOG0344|consen 345 DL-----------------KRVIVGLRNSA--------------------------NETVDQELVFC------------- 368 (593)
T ss_pred cc-----------------eeEEEecchhH--------------------------hhhhhhhheee-------------
Confidence 11 11223333222 01111111111
Q ss_pred CCcHHHHHHHHHhhhhHHHHHHHHHHHHHHcCCeEEEEecchhHHHHHHHHHhhhcCCceEEEEeCCCCHHHHHHHHHHH
Q 042857 1056 SGSVEFLHEMRIKASAKLTLLHSMLKVLYKEGHRVLIFSQMTKLLDILEDYLNIEFGPKTYERVDGSVSVGDRQAAITRF 1135 (1404)
Q Consensus 1056 ~~~~e~l~~~~i~~SgKl~~L~kLL~kl~~~G~KVLIFSq~~~~LDiLed~L~~~f~g~~y~rLdGs~s~~eRq~~Id~F 1135 (1404)
...-+|+..+..++... -.-.+|||.|...-...|...|. .|.++.+..|||..++.+|.+.+++|
T Consensus 369 -----------gse~~K~lA~rq~v~~g--~~PP~lIfVQs~eRak~L~~~L~-~~~~i~v~vIh~e~~~~qrde~~~~F 434 (593)
T KOG0344|consen 369 -----------GSEKGKLLALRQLVASG--FKPPVLIFVQSKERAKQLFEELE-IYDNINVDVIHGERSQKQRDETMERF 434 (593)
T ss_pred -----------ecchhHHHHHHHHHhcc--CCCCeEEEEecHHHHHHHHHHhh-hccCcceeeEecccchhHHHHHHHHH
Confidence 11246777777766654 23579999999988888888884 35689999999999999999999999
Q ss_pred hcCCCceEEEeecccccccccccCCCEEEEEcCCCCHhHHHHHHHhhhccCCCCcEEEEEEeeC
Q 042857 1136 NQDKSRFVFLLSTRSCGLGINLATADTVIIYDSDFNPHADIQAMNRAHRIGQSKRLLVYRLVVR 1199 (1404)
Q Consensus 1136 n~~~s~~VfLLSTrAgG~GINL~~AdtVIi~DsdWNP~~d~QAigRahRiGQ~k~V~VYrLvt~ 1199 (1404)
+.+.- .+|++|...++||++.+++.||+||.+-.-..|++++||.+|-|+... .|-|++.
T Consensus 435 R~g~I--wvLicTdll~RGiDf~gvn~VInyD~p~s~~syihrIGRtgRag~~g~--Aitfytd 494 (593)
T KOG0344|consen 435 RIGKI--WVLICTDLLARGIDFKGVNLVINYDFPQSDLSYIHRIGRTGRAGRSGK--AITFYTD 494 (593)
T ss_pred hccCe--eEEEehhhhhccccccCcceEEecCCCchhHHHHHHhhccCCCCCCcc--eEEEecc
Confidence 87654 489999999999999999999999999999999999999999998655 3444454
No 102
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.49 E-value=9.3e-13 Score=166.47 Aligned_cols=118 Identities=14% Similarity=0.131 Sum_probs=101.1
Q ss_pred hhhHHHHHHHHHHHHHHcCCeEEEEecchhHHHHHHHHHhhhcCCceEEEEeCCCCHHHHHHHHHHHhcCCCceEEEeec
Q 042857 1069 ASAKLTLLHSMLKVLYKEGHRVLIFSQMTKLLDILEDYLNIEFGPKTYERVDGSVSVGDRQAAITRFNQDKSRFVFLLST 1148 (1404)
Q Consensus 1069 ~SgKl~~L~kLL~kl~~~G~KVLIFSq~~~~LDiLed~L~~~f~g~~y~rLdGs~s~~eRq~~Id~Fn~~~s~~VfLLST 1148 (1404)
...|+.+|.+.+......|..|||||......+.|...|... ++++..++|.....+++-+..+|.. .. ++|+|
T Consensus 422 ~~~K~~al~~~i~~~~~~g~pvLI~t~si~~se~ls~~L~~~--gi~~~~Lna~~~~~Ea~ii~~ag~~--g~--VtIAT 495 (796)
T PRK12906 422 LDSKFNAVVKEIKERHAKGQPVLVGTVAIESSERLSHLLDEA--GIPHAVLNAKNHAKEAEIIMNAGQR--GA--VTIAT 495 (796)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHC--CCCeeEecCCcHHHHHHHHHhcCCC--ce--EEEEe
Confidence 356999999999998899999999999999999999999987 7899999999775555555444432 22 89999
Q ss_pred cccccccccc---CCC-----EEEEEcCCCCHhHHHHHHHhhhccCCCCcEE
Q 042857 1149 RSCGLGINLA---TAD-----TVIIYDSDFNPHADIQAMNRAHRIGQSKRLL 1192 (1404)
Q Consensus 1149 rAgG~GINL~---~Ad-----tVIi~DsdWNP~~d~QAigRahRiGQ~k~V~ 1192 (1404)
..+|+|+++. .+. +||.++.+-|...+.|++||++|.|......
T Consensus 496 nmAGRGtDI~l~~~V~~~GGLhVI~te~pes~ri~~Ql~GRtGRqG~~G~s~ 547 (796)
T PRK12906 496 NMAGRGTDIKLGPGVKELGGLAVIGTERHESRRIDNQLRGRSGRQGDPGSSR 547 (796)
T ss_pred ccccCCCCCCCCcchhhhCCcEEEeeecCCcHHHHHHHhhhhccCCCCcceE
Confidence 9999999994 566 9999999999999999999999999977653
No 103
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=99.49 E-value=1.8e-12 Score=163.50 Aligned_cols=317 Identities=20% Similarity=0.275 Sum_probs=207.3
Q ss_pred CCCHHHHHHHHHHHHhhccCCcEEEEcCCCchHHHHHHHHHHHHHhhc----cCCCc-EEEEeCCCCh-HHHHHHHHHHC
Q 042857 755 ALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEF----KAKLP-CLVLVPLSTM-PNWLAEFALWA 828 (1404)
Q Consensus 755 ~L~pyQlegVnwL~~~~~~~~~~ILADEMGLGKTiqaIa~L~~L~~~~----~~~gP-~LIVvP~Sll-~nW~rEf~kw~ 828 (1404)
..+|-|..++-.+.. |+.+|-...+|.|||+..+..+....... ...|| .||+||+.-+ .|-.+++.+|.
T Consensus 387 k~~~IQ~qAiP~Ims----GrdvIgvakTgSGKT~af~LPmirhi~dQr~~~~gdGPi~li~aPtrela~QI~r~~~kf~ 462 (997)
T KOG0334|consen 387 KPTPIQAQAIPAIMS----GRDVIGVAKTGSGKTLAFLLPMIRHIKDQRPLEEGDGPIALILAPTRELAMQIHREVRKFL 462 (997)
T ss_pred CCcchhhhhcchhcc----CcceEEeeccCCccchhhhcchhhhhhcCCChhhCCCceEEEEcCCHHHHHHHHHHHHHHH
Confidence 567888888776655 89999999999999997744433221111 13356 5899999755 56555555553
Q ss_pred --CCCcEEEEecchhHHHHHHHhhhccCCCCccccccCCCCceEEEeeHHHHHh----hhccccC-CCceEEEEcccccc
Q 042857 829 --PNLNVVEYHGCAKARAIIRQYEWHASDPDNLNKKTSSYKFNVLLTTYEMILA----DSSHLRG-VPWEVLVVDEGHRL 901 (1404)
Q Consensus 829 --P~l~Vvvy~G~~~~R~~ir~~E~~~~~~~~~~~~~~~~kfdVvITTYe~l~~----d~~~L~~-i~w~lVIVDEAHrl 901 (1404)
-+++++..+|.......|.... . ...|+|.|...++. ....+.. ....+||+|||.||
T Consensus 463 k~l~ir~v~vygg~~~~~qiaelk--------------R-g~eIvV~tpGRmiD~l~~n~grvtnlrR~t~lv~deaDrm 527 (997)
T KOG0334|consen 463 KLLGIRVVCVYGGSGISQQIAELK--------------R-GAEIVVCTPGRMIDILCANSGRVTNLRRVTYLVLDEADRM 527 (997)
T ss_pred hhcCceEEEecCCccHHHHHHHHh--------------c-CCceEEeccchhhhhHhhcCCccccccccceeeechhhhh
Confidence 3677776666655555554432 1 25678887766543 2222222 23458999999998
Q ss_pred CC--CccHHHHHHhhcccccE-EEEeccCCCCChHHHHHHhhhhCCCCCCChhHHHHHhccccchHHHHHHHHhhhhhhh
Q 042857 902 KN--SGSKLFSLLNSFSFQHR-VLLTGTPLQNNIGEMYNLLNFLQPASFPSLSSFEEKFNDLTTTQKVEELKKLVAPHML 978 (1404)
Q Consensus 902 KN--~~Sk~~~~L~~l~~~~r-LLLTGTPlqNnl~EL~sLL~fL~P~~f~s~~~F~~~f~d~~~~~~i~~L~~lL~p~mL 978 (1404)
-. ...+.+.++..+...+- ++.++| -|-++
T Consensus 528 fdmgfePq~~~Ii~nlrpdrQtvlfSat-----------------------------------------------fpr~m 560 (997)
T KOG0334|consen 528 FDMGFEPQITRILQNLRPDRQTVLFSAT-----------------------------------------------FPRSM 560 (997)
T ss_pred heeccCcccchHHhhcchhhhhhhhhhh-----------------------------------------------hhHHH
Confidence 42 23334444444432221 222222 11223
Q ss_pred hhhHhhhhhcCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCc
Q 042857 979 RRLKKDAMQNIPPKTERMVPVELSSIQAEYYRAMLTKNYQILRNIGKGVAQQSMLNIVMQLRKVCNHPYLIPGTEPDSGS 1058 (1404)
Q Consensus 979 RR~K~dV~~~LPpk~e~iV~V~LS~~Qk~~Y~~il~~n~~~L~~~~kg~~~~sllnilm~LRK~cnHP~L~~~~e~~~~~ 1058 (1404)
.-+...|+. +| .. .+| . |+..+.+.. .+.-.+|.
T Consensus 561 ~~la~~vl~-~P-ve-iiv--~--------~~svV~k~V-------------------~q~v~V~~-------------- 594 (997)
T KOG0334|consen 561 EALARKVLK-KP-VE-IIV--G--------GRSVVCKEV-------------------TQVVRVCA-------------- 594 (997)
T ss_pred HHHHHHhhc-CC-ee-EEE--c--------cceeEeccc-------------------eEEEEEec--------------
Confidence 333333443 22 22 222 1 111111000 00000110
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHcCCeEEEEecchhHHHHHHHHHhhhcCCceEEEEeCCCCHHHHHHHHHHHhcC
Q 042857 1059 VEFLHEMRIKASAKLTLLHSMLKVLYKEGHRVLIFSQMTKLLDILEDYLNIEFGPKTYERVDGSVSVGDRQAAITRFNQD 1138 (1404)
Q Consensus 1059 ~e~l~~~~i~~SgKl~~L~kLL~kl~~~G~KVLIFSq~~~~LDiLed~L~~~f~g~~y~rLdGs~s~~eRq~~Id~Fn~~ 1138 (1404)
....|+..|..+|....+ .-++|||++...-+|.|..-|... |+.+..|||.+++.+|...|..|.++
T Consensus 595 ---------~e~eKf~kL~eLl~e~~e-~~~tiiFv~~qe~~d~l~~~L~~a--g~~~~slHGgv~q~dR~sti~dfK~~ 662 (997)
T KOG0334|consen 595 ---------IENEKFLKLLELLGERYE-DGKTIIFVDKQEKADALLRDLQKA--GYNCDSLHGGVDQHDRSSTIEDFKNG 662 (997)
T ss_pred ---------CchHHHHHHHHHHHHHhh-cCCEEEEEcCchHHHHHHHHHHhc--CcchhhhcCCCchHHHHhHHHHHhcc
Confidence 125688888889888777 558999999999999999999865 88888999999999999999999876
Q ss_pred CCceEEEeecccccccccccCCCEEEEEcCCCCHhHHHHHHHhhhccCCCCcEEEEEEeeC
Q 042857 1139 KSRFVFLLSTRSCGLGINLATADTVIIYDSDFNPHADIQAMNRAHRIGQSKRLLVYRLVVR 1199 (1404)
Q Consensus 1139 ~s~~VfLLSTrAgG~GINL~~AdtVIi~DsdWNP~~d~QAigRahRiGQ~k~V~VYrLvt~ 1199 (1404)
... +|+.|.....||+......||+||.+--...|.+|.||++|-|.+. ..|.|++.
T Consensus 663 ~~~--LLvaTsvvarGLdv~~l~Lvvnyd~pnh~edyvhR~gRTgragrkg--~AvtFi~p 719 (997)
T KOG0334|consen 663 VVN--LLVATSVVARGLDVKELILVVNYDFPNHYEDYVHRVGRTGRAGRKG--AAVTFITP 719 (997)
T ss_pred Cce--EEEehhhhhcccccccceEEEEcccchhHHHHHHHhcccccCCccc--eeEEEeCh
Confidence 655 9999999999999999999999999988888999999999999877 55667766
No 104
>PRK09694 helicase Cas3; Provisional
Probab=99.48 E-value=3.8e-12 Score=164.47 Aligned_cols=342 Identities=18% Similarity=0.182 Sum_probs=190.2
Q ss_pred CCCCCHHHHHHHHHHHHhhccCCcEEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEeCCCCh-HHHHHHHHH----H
Q 042857 753 GGALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLSTM-PNWLAEFAL----W 827 (1404)
Q Consensus 753 g~~L~pyQlegVnwL~~~~~~~~~~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP~Sll-~nW~rEf~k----w 827 (1404)
+..++|+|..+..-. ..++..||-+.||.|||..++.++..+...+. ...++++.|...+ .+-...+.. .
T Consensus 284 ~~~p~p~Q~~~~~~~----~~pgl~ileApTGsGKTEAAL~~A~~l~~~~~-~~gi~~aLPT~Atan~m~~Rl~~~~~~~ 358 (878)
T PRK09694 284 GYQPRQLQTLVDALP----LQPGLTIIEAPTGSGKTEAALAYAWRLIDQGL-ADSIIFALPTQATANAMLSRLEALASKL 358 (878)
T ss_pred CCCChHHHHHHHhhc----cCCCeEEEEeCCCCCHHHHHHHHHHHHHHhCC-CCeEEEECcHHHHHHHHHHHHHHHHHHh
Confidence 568999999764321 24566899999999999999998887765433 3468888898654 445555543 4
Q ss_pred CCCCcEEEEecchhHHHHHHHh------------------hhccCCCCccccccCCCCceEEEeeHHHHHhhh-----cc
Q 042857 828 APNLNVVEYHGCAKARAIIRQY------------------EWHASDPDNLNKKTSSYKFNVLLTTYEMILADS-----SH 884 (1404)
Q Consensus 828 ~P~l~Vvvy~G~~~~R~~ir~~------------------E~~~~~~~~~~~~~~~~kfdVvITTYe~l~~d~-----~~ 884 (1404)
+++.+++..||........+.. +|... ......-.+|+|+|.+.+.... .+
T Consensus 359 f~~~~v~L~Hg~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~------~~kr~llapi~V~TiDQlL~a~l~~kh~~ 432 (878)
T PRK09694 359 FPSPNLILAHGNSRFNHLFQSLKSRAATEQGQEEAWVQCCEWLSQ------SNKRVFLGQIGVCTIDQVLISVLPVKHRF 432 (878)
T ss_pred cCCCceEeecCcchhhhhhhhhhcccccccccchhhhHHHHHHhh------hhhhhhcCCEEEcCHHHHHHHHHccchHH
Confidence 5567788888865422111110 11100 0011123589999998877421 11
Q ss_pred cc--CCCceEEEEccccccCCCccH-HHHHHhhcc--cccEEEEeccCCCCChHHHHHHhhhhCCCCCCChhHHHHHhcc
Q 042857 885 LR--GVPWEVLVVDEGHRLKNSGSK-LFSLLNSFS--FQHRVLLTGTPLQNNIGEMYNLLNFLQPASFPSLSSFEEKFND 959 (1404)
Q Consensus 885 L~--~i~w~lVIVDEAHrlKN~~Sk-~~~~L~~l~--~~~rLLLTGTPlqNnl~EL~sLL~fL~P~~f~s~~~F~~~f~d 959 (1404)
++ .+.-.+|||||+|-+=..... +...|+.+. ....|+||||+-..-..+|...+..-.+ .. ....|--
T Consensus 433 lR~~~La~svvIiDEVHAyD~ym~~lL~~~L~~l~~~g~~vIllSATLP~~~r~~L~~a~~~~~~-~~-----~~~~YPl 506 (878)
T PRK09694 433 IRGFGLGRSVLIVDEVHAYDAYMYGLLEAVLKAQAQAGGSVILLSATLPATLKQKLLDTYGGHDP-VE-----LSSAYPL 506 (878)
T ss_pred HHHHhhccCeEEEechhhCCHHHHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhccccc-cc-----ccccccc
Confidence 11 122358999999998332222 233333332 2457999999732211222111100000 00 0000000
Q ss_pred ccchHHHHHHHHhhhhhhhhhhHhhhhhcCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHH
Q 042857 960 LTTTQKVEELKKLVAPHMLRRLKKDAMQNIPPKTERMVPVELSSIQAEYYRAMLTKNYQILRNIGKGVAQQSMLNIVMQL 1039 (1404)
Q Consensus 960 ~~~~~~i~~L~~lL~p~mLRR~K~dV~~~LPpk~e~iV~V~LS~~Qk~~Y~~il~~n~~~L~~~~kg~~~~sllnilm~L 1039 (1404)
++.... . -...+-++.. ...+|. ...|.+.
T Consensus 507 vt~~~~---~--~~~~~~~~~~----~~~~~~--~~~v~v~--------------------------------------- 536 (878)
T PRK09694 507 ITWRGV---N--GAQRFDLSAH----PEQLPA--RFTIQLE--------------------------------------- 536 (878)
T ss_pred cccccc---c--cceeeecccc----ccccCc--ceEEEEE---------------------------------------
Confidence 000000 0 0000000000 000000 0000000
Q ss_pred HHHhCCCCCCCCCCCCCCcHHHHHHHHHhhhhHHHHHHHHHHHHHHcCCeEEEEecchhHHHHHHHHHhhhcC-CceEEE
Q 042857 1040 RKVCNHPYLIPGTEPDSGSVEFLHEMRIKASAKLTLLHSMLKVLYKEGHRVLIFSQMTKLLDILEDYLNIEFG-PKTYER 1118 (1404)
Q Consensus 1040 RK~cnHP~L~~~~e~~~~~~e~l~~~~i~~SgKl~~L~kLL~kl~~~G~KVLIFSq~~~~LDiLed~L~~~f~-g~~y~r 1118 (1404)
+....+. .....++..+ .+....|.+||||++.+..+..+...|...++ ...+..
T Consensus 537 ------~~~~~~~-----------------~~~~~~l~~i-~~~~~~g~~vLVf~NTV~~Aq~ly~~L~~~~~~~~~v~l 592 (878)
T PRK09694 537 ------PICLADM-----------------LPDLTLLQRM-IAAANAGAQVCLICNLVDDAQKLYQRLKELNNTQVDIDL 592 (878)
T ss_pred ------eeccccc-----------------cCHHHHHHHH-HHHHhcCCEEEEEECCHHHHHHHHHHHHhhCCCCceEEE
Confidence 0000000 0011222233 33346789999999999999999999986542 257889
Q ss_pred EeCCCCHHHH----HHHHHHHhcCCCc--eEEEeecccccccccccCCCEEEEEcCCCCHhHHHHHHHhhhccCCC
Q 042857 1119 VDGSVSVGDR----QAAITRFNQDKSR--FVFLLSTRSCGLGINLATADTVIIYDSDFNPHADIQAMNRAHRIGQS 1188 (1404)
Q Consensus 1119 LdGs~s~~eR----q~~Id~Fn~~~s~--~VfLLSTrAgG~GINL~~AdtVIi~DsdWNP~~d~QAigRahRiGQ~ 1188 (1404)
+||.++..+| +++++.|...+.. ..+|++|.+...|||+ .+|.+|....+ ...++||+||+||.|..
T Consensus 593 lHsrf~~~dR~~~E~~vl~~fgk~g~r~~~~ILVaTQViE~GLDI-d~DvlItdlaP--idsLiQRaGR~~R~~~~ 665 (878)
T PRK09694 593 FHARFTLNDRREKEQRVIENFGKNGKRNQGRILVATQVVEQSLDL-DFDWLITQLCP--VDLLFQRLGRLHRHHRK 665 (878)
T ss_pred EeCCCCHHHHHHHHHHHHHHHHhcCCcCCCeEEEECcchhheeec-CCCeEEECCCC--HHHHHHHHhccCCCCCC
Confidence 9999999999 4678889433331 4689999999999999 57988886655 67899999999999864
No 105
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=99.47 E-value=1.3e-12 Score=154.01 Aligned_cols=152 Identities=20% Similarity=0.211 Sum_probs=119.0
Q ss_pred CCeEEEEecchhHHHHHHHHHhhhcCCceEEEEeCCCCHHHHHHHHHHHhcCCCceEEEeecccccccccccCCCEEEEE
Q 042857 1087 GHRVLIFSQMTKLLDILEDYLNIEFGPKTYERVDGSVSVGDRQAAITRFNQDKSRFVFLLSTRSCGLGINLATADTVIIY 1166 (1404)
Q Consensus 1087 G~KVLIFSq~~~~LDiLed~L~~~f~g~~y~rLdGs~s~~eRq~~Id~Fn~~~s~~VfLLSTrAgG~GINL~~AdtVIi~ 1166 (1404)
..|.||||+.+.....|.-+|... ++.-.-||.+|.+.+|-+-+.+|.+..+. +||+|.++++||+++..++||+|
T Consensus 463 PGrTlVF~NsId~vKRLt~~L~~L--~i~p~~LHA~M~QKqRLknLEkF~~~~~~--VLiaTDVAARGLDIp~V~HVIHY 538 (731)
T KOG0347|consen 463 PGRTLVFCNSIDCVKRLTVLLNNL--DIPPLPLHASMIQKQRLKNLEKFKQSPSG--VLIATDVAARGLDIPGVQHVIHY 538 (731)
T ss_pred CCceEEEechHHHHHHHHHHHhhc--CCCCchhhHHHHHHHHHHhHHHHhcCCCe--EEEeehhhhccCCCCCcceEEEe
Confidence 358999999999999999999876 77788899999999999999999876665 89999999999999999999999
Q ss_pred cCCCCHhHHHHHHHhhhccCCCCcEEEEEEeeC---------------------CCHHHHHHHHHHHHHhhhHHHhcCC-
Q 042857 1167 DSDFNPHADIQAMNRAHRIGQSKRLLVYRLVVR---------------------ASVEERILQLAKKKLMLDQLFVNKS- 1224 (1404)
Q Consensus 1167 DsdWNP~~d~QAigRahRiGQ~k~V~VYrLvt~---------------------~TvEE~Ilq~a~~Kl~L~~~vv~~~- 1224 (1404)
.-|-+...|++|-||..|.+.. .|.|.. +.. -.|++.|+...+.+..|++-+..-.
T Consensus 539 qVPrtseiYVHRSGRTARA~~~-Gvsvml-~~P~e~~~~~KL~ktL~k~~dlpifPv~~~~m~~lkeRvrLA~ei~~~e~ 616 (731)
T KOG0347|consen 539 QVPRTSEIYVHRSGRTARANSE-GVSVML-CGPQEVGPLKKLCKTLKKKEDLPIFPVETDIMDALKERVRLAREIDKLEI 616 (731)
T ss_pred ecCCccceeEecccccccccCC-CeEEEE-eChHHhHHHHHHHHHHhhccCCCceeccHHHHHHHHHHHHHHHHHHHhhh
Confidence 9999999999999999998753 232211 111 2358889998888888888776422
Q ss_pred --CChHHHHHHHHhhHHHHhcC
Q 042857 1225 --GSQKEVEDILRWGTEELFND 1244 (1404)
Q Consensus 1225 --~s~~eledilk~Ga~~Lf~~ 1244 (1404)
....--+.-|+-.|.+|=-+
T Consensus 617 k~~~v~~~~sWlkkaA~el~id 638 (731)
T KOG0347|consen 617 KSKRVRKEESWLKKAADELGID 638 (731)
T ss_pred hhhhhhhhHHHHHHHHHHhCCc
Confidence 11122234455566666433
No 106
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.47 E-value=2.6e-12 Score=162.66 Aligned_cols=119 Identities=15% Similarity=0.128 Sum_probs=106.2
Q ss_pred hhhHHHHHHHHHHHHHHcCCeEEEEecchhHHHHHHHHHhhhcCCceEEEEeCCCCHHHHHHHHHHHhcCCCceEEEeec
Q 042857 1069 ASAKLTLLHSMLKVLYKEGHRVLIFSQMTKLLDILEDYLNIEFGPKTYERVDGSVSVGDRQAAITRFNQDKSRFVFLLST 1148 (1404)
Q Consensus 1069 ~SgKl~~L~kLL~kl~~~G~KVLIFSq~~~~LDiLed~L~~~f~g~~y~rLdGs~s~~eRq~~Id~Fn~~~s~~VfLLST 1148 (1404)
.-.|+.++.+-+..+.+.|..||||+......+.|..+|... ++.+..|++.....+|+.+.+.|+.+. ++|+|
T Consensus 431 ~~~K~~Aii~ei~~~~~~GrpVLV~t~sv~~se~ls~~L~~~--gi~~~vLnak~~~~Ea~ii~~Ag~~G~----VtIAT 504 (908)
T PRK13107 431 ADEKYQAIIKDIKDCRERGQPVLVGTVSIEQSELLARLMVKE--KIPHEVLNAKFHEREAEIVAQAGRTGA----VTIAT 504 (908)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEeCcHHHHHHHHHHHHHC--CCCeEeccCcccHHHHHHHHhCCCCCc----EEEec
Confidence 468999999999999999999999999999999999999986 899999999999999999999997644 89999
Q ss_pred ccccccccccCC-------------------------------------CEEEEEcCCCCHhHHHHHHHhhhccCCCCcE
Q 042857 1149 RSCGLGINLATA-------------------------------------DTVIIYDSDFNPHADIQAMNRAHRIGQSKRL 1191 (1404)
Q Consensus 1149 rAgG~GINL~~A-------------------------------------dtVIi~DsdWNP~~d~QAigRahRiGQ~k~V 1191 (1404)
..+|+|+++.-. =+||.-...-|-..|.|..||++|.|....-
T Consensus 505 nmAGRGTDIkLggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerheSrRID~QLrGRaGRQGDPGss 584 (908)
T PRK13107 505 NMAGRGTDIVLGGNWNMEIEALENPTAEQKAKIKADWQIRHDEVVAAGGLHILGTERHESRRIDNQLRGRAGRQGDAGSS 584 (908)
T ss_pred CCcCCCcceecCCchHHhhhhhcchhhHHHHHHHHHHHhhHHHHHHcCCCEEEecccCchHHHHhhhhcccccCCCCCce
Confidence 999999997522 2788889999999999999999999997665
Q ss_pred EE
Q 042857 1192 LV 1193 (1404)
Q Consensus 1192 ~V 1193 (1404)
..
T Consensus 585 ~f 586 (908)
T PRK13107 585 RF 586 (908)
T ss_pred eE
Confidence 43
No 107
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=99.46 E-value=2e-12 Score=149.35 Aligned_cols=308 Identities=19% Similarity=0.200 Sum_probs=189.3
Q ss_pred HHHHHHHHHHHhhccCCcEEEEcCCCchHHHHHHHHHHHHHhhc-c-----CCCcEEEEeCCCCh-HHHHHHHHHH---C
Q 042857 759 HQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEF-K-----AKLPCLVLVPLSTM-PNWLAEFALW---A 828 (1404)
Q Consensus 759 yQlegVnwL~~~~~~~~~~ILADEMGLGKTiqaIa~L~~L~~~~-~-----~~gP~LIVvP~Sll-~nW~rEf~kw---~ 828 (1404)
.|..++-.++. |.+.+--.-+|.|||...+.-+...+... . .....+|+||+.-+ .|-...|++. +
T Consensus 45 IQs~aIplaLE----gKDvvarArTGSGKT~AYliPllqkll~~k~t~~~e~~~sa~iLvPTkEL~qQvy~viekL~~~c 120 (569)
T KOG0346|consen 45 IQSSAIPLALE----GKDVVARARTGSGKTAAYLIPLLQKLLAEKKTNDGEQGPSAVILVPTKELAQQVYKVIEKLVEYC 120 (569)
T ss_pred hhhcccchhhc----CcceeeeeccCCCchHHHHHHHHHHHHHhhhcccccccceeEEEechHHHHHHHHHHHHHHHHHH
Confidence 45666665555 78888889999999998776655443222 1 22246899998755 6666676654 3
Q ss_pred C-CCcEEEEecchhHHHHHHHhhhccCCCCccccccCCCCceEEEeeHHHHHhhhcc---ccCCCceEEEEccccccCCC
Q 042857 829 P-NLNVVEYHGCAKARAIIRQYEWHASDPDNLNKKTSSYKFNVLLTTYEMILADSSH---LRGVPWEVLVVDEGHRLKNS 904 (1404)
Q Consensus 829 P-~l~Vvvy~G~~~~R~~ir~~E~~~~~~~~~~~~~~~~kfdVvITTYe~l~~d~~~---L~~i~w~lVIVDEAHrlKN~ 904 (1404)
+ +++++-...+...-..... -....+|||+|+..+...... ...-...++|+|||.-+-..
T Consensus 121 ~k~lr~~nl~s~~sdsv~~~~---------------L~d~pdIvV~TP~~ll~~~~~~~~~~~~~l~~LVvDEADLllsf 185 (569)
T KOG0346|consen 121 SKDLRAINLASSMSDSVNSVA---------------LMDLPDIVVATPAKLLRHLAAGVLEYLDSLSFLVVDEADLLLSF 185 (569)
T ss_pred HHhhhhhhhhcccchHHHHHH---------------HccCCCeEEeChHHHHHHHhhccchhhhheeeEEechhhhhhhc
Confidence 3 4444443322211111000 113568999999998875321 22234578999999977543
Q ss_pred cc--HHHHHHhhcccc-cEEEEeccCCCCChHHHHHHhhhhCCCCCCChhHHHHHhccccchHHHHHHHHhhhhhhhhhh
Q 042857 905 GS--KLFSLLNSFSFQ-HRVLLTGTPLQNNIGEMYNLLNFLQPASFPSLSSFEEKFNDLTTTQKVEELKKLVAPHMLRRL 981 (1404)
Q Consensus 905 ~S--k~~~~L~~l~~~-~rLLLTGTPlqNnl~EL~sLL~fL~P~~f~s~~~F~~~f~d~~~~~~i~~L~~lL~p~mLRR~ 981 (1404)
+- -+......+... -.+|||||- .+.+..|+++
T Consensus 186 GYeedlk~l~~~LPr~~Q~~LmSATl-----------------------------------~dDv~~LKkL--------- 221 (569)
T KOG0346|consen 186 GYEEDLKKLRSHLPRIYQCFLMSATL-----------------------------------SDDVQALKKL--------- 221 (569)
T ss_pred ccHHHHHHHHHhCCchhhheeehhhh-----------------------------------hhHHHHHHHH---------
Confidence 21 222223333211 234555552 1112222222
Q ss_pred HhhhhhcCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCcHHH
Q 042857 982 KKDAMQNIPPKTERMVPVELSSIQAEYYRAMLTKNYQILRNIGKGVAQQSMLNIVMQLRKVCNHPYLIPGTEPDSGSVEF 1061 (1404)
Q Consensus 982 K~dV~~~LPpk~e~iV~V~LS~~Qk~~Y~~il~~n~~~L~~~~kg~~~~sllnilm~LRK~cnHP~L~~~~e~~~~~~e~ 1061 (1404)
+|..|.++.-.+++....+.
T Consensus 222 ------------------------------------------------------------~l~nPviLkl~e~el~~~dq 241 (569)
T KOG0346|consen 222 ------------------------------------------------------------FLHNPVILKLTEGELPNPDQ 241 (569)
T ss_pred ------------------------------------------------------------hccCCeEEEeccccCCCccc
Confidence 22223333222221111111
Q ss_pred HHHHHH--hhhhHHHHHHHHHHHHHHcCCeEEEEecchhHHHHHHHHHhhhcCCceEEEEeCCCCHHHHHHHHHHHhcCC
Q 042857 1062 LHEMRI--KASAKLTLLHSMLKVLYKEGHRVLIFSQMTKLLDILEDYLNIEFGPKTYERVDGSVSVGDRQAAITRFNQDK 1139 (1404)
Q Consensus 1062 l~~~~i--~~SgKl~~L~kLL~kl~~~G~KVLIFSq~~~~LDiLed~L~~~f~g~~y~rLdGs~s~~eRq~~Id~Fn~~~ 1139 (1404)
+....+ ..-.|+.+|-.||+--.= ..|.|||.+.....--|.-||... |++.+.++|.++..-|..+|+.||.+-
T Consensus 242 L~Qy~v~cse~DKflllyallKL~LI-~gKsliFVNtIdr~YrLkLfLeqF--GiksciLNseLP~NSR~Hii~QFNkG~ 318 (569)
T KOG0346|consen 242 LTQYQVKCSEEDKFLLLYALLKLRLI-RGKSLIFVNTIDRCYRLKLFLEQF--GIKSCILNSELPANSRCHIIEQFNKGL 318 (569)
T ss_pred ceEEEEEeccchhHHHHHHHHHHHHh-cCceEEEEechhhhHHHHHHHHHh--CcHhhhhcccccccchhhHHHHhhCcc
Confidence 111000 112355555555443222 348999999999999999999874 899999999999999999999998644
Q ss_pred CceEEEeecc--------------------------c---------ccccccccCCCEEEEEcCCCCHhHHHHHHHhhhc
Q 042857 1140 SRFVFLLSTR--------------------------S---------CGLGINLATADTVIIYDSDFNPHADIQAMNRAHR 1184 (1404)
Q Consensus 1140 s~~VfLLSTr--------------------------A---------gG~GINL~~AdtVIi~DsdWNP~~d~QAigRahR 1184 (1404)
+-+||.|. + .++||+++....||+||.|-++..|++|+||..|
T Consensus 319 --YdivIAtD~s~~~~~~eee~kgk~~e~~~kndkkskkK~D~E~GVsRGIDF~~V~~VlNFD~P~t~~sYIHRvGRTaR 396 (569)
T KOG0346|consen 319 --YDIVIATDDSADGDKLEEEVKGKSDEKNPKNDKKSKKKLDKESGVSRGIDFHHVSNVLNFDFPETVTSYIHRVGRTAR 396 (569)
T ss_pred --eeEEEEccCccchhhhhccccccccccCCCCccccccccCchhchhccccchheeeeeecCCCCchHHHHHhcccccc
Confidence 33666766 1 2579999999999999999999999999999999
Q ss_pred cCCCCcEEEE
Q 042857 1185 IGQSKRLLVY 1194 (1404)
Q Consensus 1185 iGQ~k~V~VY 1194 (1404)
-|.+..+.-|
T Consensus 397 g~n~GtalSf 406 (569)
T KOG0346|consen 397 GNNKGTALSF 406 (569)
T ss_pred CCCCCceEEE
Confidence 9887766443
No 108
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=99.45 E-value=2.1e-12 Score=152.79 Aligned_cols=313 Identities=22% Similarity=0.262 Sum_probs=205.5
Q ss_pred CCCHHHHHHHHHHHHhhccCCcEEEEcCCCchHHHHHH-HHHHHHHhhccCCCcEEEEeCCCChH-HHHHHHHHHCCC--
Q 042857 755 ALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSAC-AFISSLYCEFKAKLPCLVLVPLSTMP-NWLAEFALWAPN-- 830 (1404)
Q Consensus 755 ~L~pyQlegVnwL~~~~~~~~~~ILADEMGLGKTiqaI-a~L~~L~~~~~~~gP~LIVvP~Sll~-nW~rEf~kw~P~-- 830 (1404)
.|.|.|.-+|.. -+-.|.+.++...++.|||+.+= |-|..++ ...+.+|.+||+-.+. |=.++|..-+..
T Consensus 216 eLlPVQ~laVe~---GLLeG~nllVVSaTasGKTLIgElAGi~~~l---~~g~KmlfLvPLVALANQKy~dF~~rYs~Lg 289 (830)
T COG1202 216 ELLPVQVLAVEA---GLLEGENLLVVSATASGKTLIGELAGIPRLL---SGGKKMLFLVPLVALANQKYEDFKERYSKLG 289 (830)
T ss_pred eecchhhhhhhh---ccccCCceEEEeccCCCcchHHHhhCcHHHH---hCCCeEEEEehhHHhhcchHHHHHHHhhccc
Confidence 699999988854 23358999999999999998652 3333333 3456799999998875 456678766543
Q ss_pred CcEEEEecchhHHHHHHHhhhccCCCCccccccCCCCceEEEeeHHHHHh---hhccccCCCceEEEEccccccCC--Cc
Q 042857 831 LNVVEYHGCAKARAIIRQYEWHASDPDNLNKKTSSYKFNVLLTTYEMILA---DSSHLRGVPWEVLVVDEGHRLKN--SG 905 (1404)
Q Consensus 831 l~Vvvy~G~~~~R~~ir~~E~~~~~~~~~~~~~~~~kfdVvITTYe~l~~---d~~~L~~i~w~lVIVDEAHrlKN--~~ 905 (1404)
+.+-+-.|....+. .+ ...........||+|.||+-+-- -...+. +...|||||.|.|.. .+
T Consensus 290 lkvairVG~srIk~----~~-------~pv~~~t~~dADIIVGTYEGiD~lLRtg~~lg--diGtVVIDEiHtL~deERG 356 (830)
T COG1202 290 LKVAIRVGMSRIKT----RE-------EPVVVDTSPDADIIVGTYEGIDYLLRTGKDLG--DIGTVVIDEIHTLEDEERG 356 (830)
T ss_pred ceEEEEechhhhcc----cC-------CccccCCCCCCcEEEeechhHHHHHHcCCccc--ccceEEeeeeeeccchhcc
Confidence 44444555443221 10 00112334678999999986632 223333 457999999999976 23
Q ss_pred cHHHHH---Hhhcc-cccEEEEeccCCCCChHHHHHHhhhhCCCCCCChhHHHHHhccccchHHHHHHHHhhhhhhhhhh
Q 042857 906 SKLFSL---LNSFS-FQHRVLLTGTPLQNNIGEMYNLLNFLQPASFPSLSSFEEKFNDLTTTQKVEELKKLVAPHMLRRL 981 (1404)
Q Consensus 906 Sk~~~~---L~~l~-~~~rLLLTGTPlqNnl~EL~sLL~fL~P~~f~s~~~F~~~f~d~~~~~~i~~L~~lL~p~mLRR~ 981 (1404)
+.+--. |+.+. ....+.||||- .|+.||...|..- ++.
T Consensus 357 ~RLdGLI~RLr~l~~~AQ~i~LSATV--gNp~elA~~l~a~----------------------------------lV~-- 398 (830)
T COG1202 357 PRLDGLIGRLRYLFPGAQFIYLSATV--GNPEELAKKLGAK----------------------------------LVL-- 398 (830)
T ss_pred cchhhHHHHHHHhCCCCeEEEEEeec--CChHHHHHHhCCe----------------------------------eEe--
Confidence 443333 33333 34568899994 5556555433210 000
Q ss_pred HhhhhhcCC-CceEEEEEecCCHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCcHH
Q 042857 982 KKDAMQNIP-PKTERMVPVELSSIQAEYYRAMLTKNYQILRNIGKGVAQQSMLNIVMQLRKVCNHPYLIPGTEPDSGSVE 1060 (1404)
Q Consensus 982 K~dV~~~LP-pk~e~iV~V~LS~~Qk~~Y~~il~~n~~~L~~~~kg~~~~sllnilm~LRK~cnHP~L~~~~e~~~~~~e 1060 (1404)
...-| |...+++.+.-..
T Consensus 399 ----y~~RPVplErHlvf~~~e~--------------------------------------------------------- 417 (830)
T COG1202 399 ----YDERPVPLERHLVFARNES--------------------------------------------------------- 417 (830)
T ss_pred ----ecCCCCChhHeeeeecCch---------------------------------------------------------
Confidence 00111 2233333333111
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHH----cC--CeEEEEecchhHHHHHHHHHhhhcCCceEEEEeCCCCHHHHHHHHHH
Q 042857 1061 FLHEMRIKASAKLTLLHSMLKVLYK----EG--HRVLIFSQMTKLLDILEDYLNIEFGPKTYERVDGSVSVGDRQAAITR 1134 (1404)
Q Consensus 1061 ~l~~~~i~~SgKl~~L~kLL~kl~~----~G--~KVLIFSq~~~~LDiLed~L~~~f~g~~y~rLdGs~s~~eRq~~Id~ 1134 (1404)
.|..++.++.+.-+. .| .+.|||+...+-...|.++|..+ |++..-+|++++..+|+.+-..
T Consensus 418 ----------eK~~ii~~L~k~E~~~~sskg~rGQtIVFT~SRrr~h~lA~~L~~k--G~~a~pYHaGL~y~eRk~vE~~ 485 (830)
T COG1202 418 ----------EKWDIIARLVKREFSTESSKGYRGQTIVFTYSRRRCHELADALTGK--GLKAAPYHAGLPYKERKSVERA 485 (830)
T ss_pred ----------HHHHHHHHHHHHHHhhhhccCcCCceEEEecchhhHHHHHHHhhcC--CcccccccCCCcHHHHHHHHHH
Confidence 222222222222111 12 36899999999999999999976 8999999999999999999999
Q ss_pred HhcCCCceEEEeecccccccccccCCCEEEE----EcCCC-CHhHHHHHHHhhhccCCCCcEEEEEEeeCC
Q 042857 1135 FNQDKSRFVFLLSTRSCGLGINLATADTVII----YDSDF-NPHADIQAMNRAHRIGQSKRLLVYRLVVRA 1200 (1404)
Q Consensus 1135 Fn~~~s~~VfLLSTrAgG~GINL~~AdtVIi----~DsdW-NP~~d~QAigRahRiGQ~k~V~VYrLvt~~ 1200 (1404)
|.+..-. .+++|.|.|-|++++ |+.||| +..+| +|+.+.|-.|||+|.|=...-.||-|+-.|
T Consensus 486 F~~q~l~--~VVTTAAL~AGVDFP-ASQVIFEsLaMG~~WLs~~EF~QM~GRAGRp~yHdrGkVyllvepg 553 (830)
T COG1202 486 FAAQELA--AVVTTAALAAGVDFP-ASQVIFESLAMGIEWLSVREFQQMLGRAGRPDYHDRGKVYLLVEPG 553 (830)
T ss_pred HhcCCcc--eEeehhhhhcCCCCc-hHHHHHHHHHcccccCCHHHHHHHhcccCCCCcccCceEEEEecCC
Confidence 9877665 678999999999998 555654 44455 999999999999999987777788887765
No 109
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.44 E-value=6.5e-13 Score=140.91 Aligned_cols=158 Identities=33% Similarity=0.372 Sum_probs=113.2
Q ss_pred CCCCCHHHHHHHHHHHHhhccC-CcEEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEeCC-CChHHHHHHHHHHCCC
Q 042857 753 GGALFPHQLEALNWLRKCWHKS-KNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPL-STMPNWLAEFALWAPN 830 (1404)
Q Consensus 753 g~~L~pyQlegVnwL~~~~~~~-~~~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP~-Sll~nW~rEf~kw~P~ 830 (1404)
+.+++|+|.+++..+.. . .++++..++|+|||..++.++........ ..++||++|. .+..+|..++..+++.
T Consensus 6 ~~~~~~~Q~~~~~~~~~----~~~~~~i~~~~GsGKT~~~~~~~~~~~~~~~-~~~~l~~~p~~~~~~~~~~~~~~~~~~ 80 (201)
T smart00487 6 FEPLRPYQKEAIEALLS----GLRDVILAAPTGSGKTLAALLPALEALKRGK-GKRVLVLVPTRELAEQWAEELKKLGPS 80 (201)
T ss_pred CCCCCHHHHHHHHHHHc----CCCcEEEECCCCCchhHHHHHHHHHHhcccC-CCcEEEEeCCHHHHHHHHHHHHHHhcc
Confidence 35799999999988865 4 89999999999999988888777665433 4589999995 4568999999998876
Q ss_pred C---cEEEEecchhHHHHHHHhhhccCCCCccccccCCCCceEEEeeHHHHHhhhcc--ccCCCceEEEEccccccCC--
Q 042857 831 L---NVVEYHGCAKARAIIRQYEWHASDPDNLNKKTSSYKFNVLLTTYEMILADSSH--LRGVPWEVLVVDEGHRLKN-- 903 (1404)
Q Consensus 831 l---~Vvvy~G~~~~R~~ir~~E~~~~~~~~~~~~~~~~kfdVvITTYe~l~~d~~~--L~~i~w~lVIVDEAHrlKN-- 903 (1404)
. ....+.+... ...+.... ....+|+++||+.+...... +....|+++||||+|.+.+
T Consensus 81 ~~~~~~~~~~~~~~-~~~~~~~~--------------~~~~~v~~~t~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~ 145 (201)
T smart00487 81 LGLKVVGLYGGDSK-REQLRKLE--------------SGKTDILVTTPGRLLDLLENDLLELSNVDLVILDEAHRLLDGG 145 (201)
T ss_pred CCeEEEEEeCCcch-HHHHHHHh--------------cCCCCEEEeChHHHHHHHHcCCcCHhHCCEEEEECHHHHhcCC
Confidence 3 3444444332 22222111 11238999999999876544 4555788999999999985
Q ss_pred CccHHHHHHhhc-ccccEEEEeccCCCC
Q 042857 904 SGSKLFSLLNSF-SFQHRVLLTGTPLQN 930 (1404)
Q Consensus 904 ~~Sk~~~~L~~l-~~~~rLLLTGTPlqN 930 (1404)
........+..+ ...+++++||||..+
T Consensus 146 ~~~~~~~~~~~~~~~~~~v~~saT~~~~ 173 (201)
T smart00487 146 FGDQLEKLLKLLPKNVQLLLLSATPPEE 173 (201)
T ss_pred cHHHHHHHHHhCCccceEEEEecCCchh
Confidence 333444444545 467889999999633
No 110
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.44 E-value=2.3e-11 Score=154.16 Aligned_cols=134 Identities=19% Similarity=0.223 Sum_probs=111.2
Q ss_pred hhhHHHHHHHHHHHHHHcCCeEEEEecchhHHHHHHHHHhhhcCCceEEEEeCCCCHHHHHHHHHHHhcCCCceEEEeec
Q 042857 1069 ASAKLTLLHSMLKVLYKEGHRVLIFSQMTKLLDILEDYLNIEFGPKTYERVDGSVSVGDRQAAITRFNQDKSRFVFLLST 1148 (1404)
Q Consensus 1069 ~SgKl~~L~kLL~kl~~~G~KVLIFSq~~~~LDiLed~L~~~f~g~~y~rLdGs~s~~eRq~~Id~Fn~~~s~~VfLLST 1148 (1404)
..+++..|.+.|..+.+.|.++|||+.....++.|..+|... |+.+..+||.++..+|.+++..|..+. +.+|++|
T Consensus 424 ~~~qi~~Ll~eI~~~~~~g~~vLIf~~tk~~ae~L~~~L~~~--gi~~~~lh~~~~~~eR~~~l~~fr~G~--i~VLV~t 499 (655)
T TIGR00631 424 TDGQVDDLLSEIRQRVARNERVLVTTLTKKMAEDLTDYLKEL--GIKVRYLHSEIDTLERVEIIRDLRLGE--FDVLVGI 499 (655)
T ss_pred ccchHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhhh--ccceeeeeCCCCHHHHHHHHHHHhcCC--ceEEEEc
Confidence 357788888888888899999999999999999999999976 788899999999999999999997644 4588999
Q ss_pred ccccccccccCCCEEEEEcC-----CCCHhHHHHHHHhhhccCCCCcEEEEEEeeCCC--HHHHHHHH
Q 042857 1149 RSCGLGINLATADTVIIYDS-----DFNPHADIQAMNRAHRIGQSKRLLVYRLVVRAS--VEERILQL 1209 (1404)
Q Consensus 1149 rAgG~GINL~~AdtVIi~Ds-----dWNP~~d~QAigRahRiGQ~k~V~VYrLvt~~T--vEE~Ilq~ 1209 (1404)
..+++|++++.++.||++|. +-+...++|++||++|.. ... ++.|+...| +.+.|.+.
T Consensus 500 ~~L~rGfDiP~v~lVvi~DadifG~p~~~~~~iqriGRagR~~-~G~--vi~~~~~~~~~~~~ai~~~ 564 (655)
T TIGR00631 500 NLLREGLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGK--VIMYADKITDSMQKAIEET 564 (655)
T ss_pred ChhcCCeeeCCCcEEEEeCcccccCCCCHHHHHHHhcCCCCCC-CCE--EEEEEcCCCHHHHHHHHHH
Confidence 99999999999999999994 558889999999999974 333 444555443 44444443
No 111
>COG4889 Predicted helicase [General function prediction only]
Probab=99.42 E-value=4e-12 Score=155.03 Aligned_cols=380 Identities=18% Similarity=0.247 Sum_probs=195.8
Q ss_pred CCCCCHHHHHHHHHHHHhhccCCcEEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEeCC-CChHHHHHHHHHHC-CC
Q 042857 753 GGALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPL-STMPNWLAEFALWA-PN 830 (1404)
Q Consensus 753 g~~L~pyQlegVnwL~~~~~~~~~~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP~-Sll~nW~rEf~kw~-P~ 830 (1404)
..+|||||.++++-....+..+.+|-|...+|.|||.+++-+...+.. ..+|.+||. ++|.|=.+|...-. -+
T Consensus 159 ~kk~R~hQq~Aid~a~~~F~~n~RGkLIMAcGTGKTfTsLkisEala~-----~~iL~LvPSIsLLsQTlrew~~~~~l~ 233 (1518)
T COG4889 159 PKKPRPHQQTAIDAAKEGFSDNDRGKLIMACGTGKTFTSLKISEALAA-----ARILFLVPSISLLSQTLREWTAQKELD 233 (1518)
T ss_pred CCCCChhHHHHHHHHHhhcccccCCcEEEecCCCccchHHHHHHHHhh-----hheEeecchHHHHHHHHHHHhhccCcc
Confidence 357999999999999999988888877778999999999988877653 468999997 56666544432211 12
Q ss_pred CcEE-EEecchhHHH--HHHHhhhccCCCCc-------cccccCCCCceEEEeeHHHHHh--hhccccCCCceEEEEccc
Q 042857 831 LNVV-EYHGCAKARA--IIRQYEWHASDPDN-------LNKKTSSYKFNVLLTTYEMILA--DSSHLRGVPWEVLVVDEG 898 (1404)
Q Consensus 831 l~Vv-vy~G~~~~R~--~ir~~E~~~~~~~~-------~~~~~~~~kfdVvITTYe~l~~--d~~~L~~i~w~lVIVDEA 898 (1404)
++.. +....+-+|. -|..+++....... ........+.-||..||+.+.. ......--.|++||+|||
T Consensus 234 ~~a~aVcSD~kvsrs~eDik~sdl~~p~sT~~~~il~~~~~~~k~~~~~vvFsTYQSl~~i~eAQe~G~~~fDliicDEA 313 (1518)
T COG4889 234 FRASAVCSDDKVSRSAEDIKASDLPIPVSTDLEDILSEMEHRQKANGLTVVFSTYQSLPRIKEAQEAGLDEFDLIICDEA 313 (1518)
T ss_pred ceeEEEecCccccccccccccccCCCCCcccHHHHHHHHHHhhccCCcEEEEEcccchHHHHHHHHcCCCCccEEEecch
Confidence 3322 2222222221 11111111110000 0111233456799999998865 344455567999999999
Q ss_pred cccCCC------ccHHHHH--HhhcccccEEEEeccCCCC------ChHHHHHHhhhhCCCCCCChhHHHHHhccccchH
Q 042857 899 HRLKNS------GSKLFSL--LNSFSFQHRVLLTGTPLQN------NIGEMYNLLNFLQPASFPSLSSFEEKFNDLTTTQ 964 (1404)
Q Consensus 899 HrlKN~------~Sk~~~~--L~~l~~~~rLLLTGTPlqN------nl~EL~sLL~fL~P~~f~s~~~F~~~f~d~~~~~ 964 (1404)
||-.+. .|.+.+. -..+++..||.|||||--- +..|--+.|. .+.+...|-++|..+.=.+
T Consensus 314 HRTtGa~~a~dd~saFt~vHs~~niKa~kRlYmTATPkiy~eS~K~kAkd~s~~l~-----SMDDe~~fGeef~rl~Fge 388 (1518)
T COG4889 314 HRTTGATLAGDDKSAFTRVHSDQNIKAAKRLYMTATPKIYSESSKAKAKDHSAELS-----SMDDELTFGEEFHRLGFGE 388 (1518)
T ss_pred hccccceecccCcccceeecCcchhHHHHhhhcccCchhhchhhhhhhhhccceee-----ccchhhhhchhhhcccHHH
Confidence 997541 1222111 2244677899999999211 0111000000 1122233333333322111
Q ss_pred HHHHHHHhhhhhhhhhhHhhhhh-cCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHhhccchhhHH------HHHHHH
Q 042857 965 KVEELKKLVAPHMLRRLKKDAMQ-NIPPKTERMVPVELSSIQAEYYRAMLTKNYQILRNIGKGVAQQS------MLNIVM 1037 (1404)
Q Consensus 965 ~i~~L~~lL~p~mLRR~K~dV~~-~LPpk~e~iV~V~LS~~Qk~~Y~~il~~n~~~L~~~~kg~~~~s------llnilm 1037 (1404)
. |.. -|......++.|.-...+..+... +...+++..... ..|-|+
T Consensus 389 A-------------------v~rdlLTDYKVmvlaVd~~~i~~~~~~~--------~~~~~~~L~~dd~~kIvG~wnGla 441 (1518)
T COG4889 389 A-------------------VERDLLTDYKVMVLAVDKEVIAGVLQSV--------LSGPSKGLALDDVSKIVGCWNGLA 441 (1518)
T ss_pred H-------------------HHhhhhccceEEEEEechhhhhhhhhhh--------ccCcccccchhhhhhhhhhhhhhh
Confidence 1 111 244555555555532222222111 111111111111 111111
Q ss_pred HHHHHhCCCCCCCCC-CCCCCcHHHHHHHHHhhhhHHHHHHHHHHHHHHcCCeEEEEecchhHHHHHHHHHhhhcCC--c
Q 042857 1038 QLRKVCNHPYLIPGT-EPDSGSVEFLHEMRIKASAKLTLLHSMLKVLYKEGHRVLIFSQMTKLLDILEDYLNIEFGP--K 1114 (1404)
Q Consensus 1038 ~LRK~cnHP~L~~~~-e~~~~~~e~l~~~~i~~SgKl~~L~kLL~kl~~~G~KVLIFSq~~~~LDiLed~L~~~f~g--~ 1114 (1404)
+--.--+|---++.. .+......+. -.++.|-++.- +|..+++....-|...|.+ +
T Consensus 442 kr~g~~n~~~~~~~d~ap~~RAIaF~--k~I~tSK~i~~-------------------sFe~Vve~Y~~Elk~d~~nL~i 500 (1518)
T COG4889 442 KRNGEDNDLKNIKADTAPMQRAIAFA--KDIKTSKQIAE-------------------SFETVVEAYDEELKKDFKNLKI 500 (1518)
T ss_pred hhccccccccCCcCCchHHHHHHHHH--HhhHHHHHHHH-------------------HHHHHHHHHHHHHHhcCCCceE
Confidence 110000000000000 0000000010 01223332211 2333333333223222333 3
Q ss_pred eEEEEeCCCCHHHHHHHHHHHhc-CCCceEEEeecccccccccccCCCEEEEEcCCCCHhHHHHHHHhhhccCCCCc
Q 042857 1115 TYERVDGSVSVGDRQAAITRFNQ-DKSRFVFLLSTRSCGLGINLATADTVIIYDSDFNPHADIQAMNRAHRIGQSKR 1190 (1404)
Q Consensus 1115 ~y~rLdGs~s~~eRq~~Id~Fn~-~~s~~VfLLSTrAgG~GINL~~AdtVIi~DsdWNP~~d~QAigRahRiGQ~k~ 1190 (1404)
.+..+||.|...+|.....--|. .+...-+|-..|+.++|+++++-|.||||||--.-...+||.||+-|-.-.|.
T Consensus 501 Si~HvDGtmNal~R~~l~~l~~~~~~neckIlSNaRcLSEGVDVPaLDsViFf~pr~smVDIVQaVGRVMRKa~gK~ 577 (1518)
T COG4889 501 SIDHVDGTMNALERLDLLELKNTFEPNECKILSNARCLSEGVDVPALDSVIFFDPRSSMVDIVQAVGRVMRKAKGKK 577 (1518)
T ss_pred EeecccccccHHHHHHHHhccCCCCcchheeeccchhhhcCCCccccceEEEecCchhHHHHHHHHHHHHHhCcCCc
Confidence 45578999999999554433322 23334578889999999999999999999998888888999999999765433
No 112
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.42 E-value=3.4e-13 Score=124.93 Aligned_cols=77 Identities=35% Similarity=0.583 Sum_probs=71.9
Q ss_pred HHhhhcCCceEEEEeCCCCHHHHHHHHHHHhcCCCceEEEeecccccccccccCCCEEEEEcCCCCHhHHHHHHHhhhcc
Q 042857 1106 YLNIEFGPKTYERVDGSVSVGDRQAAITRFNQDKSRFVFLLSTRSCGLGINLATADTVIIYDSDFNPHADIQAMNRAHRI 1185 (1404)
Q Consensus 1106 ~L~~~f~g~~y~rLdGs~s~~eRq~~Id~Fn~~~s~~VfLLSTrAgG~GINL~~AdtVIi~DsdWNP~~d~QAigRahRi 1185 (1404)
+|+.. ++.+..++|.++..+|+.+++.|+.+... +|++|.++++|||++.+++||+|+++||+..+.|++||++|.
T Consensus 2 ~L~~~--~~~~~~i~~~~~~~~r~~~~~~f~~~~~~--vli~t~~~~~Gid~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~ 77 (78)
T PF00271_consen 2 FLEKK--GIKVAIIHGDMSQKERQEILKKFNSGEIR--VLIATDILGEGIDLPDASHVIFYDPPWSPEEYIQRIGRAGRI 77 (78)
T ss_dssp HHHHT--TSSEEEESTTSHHHHHHHHHHHHHTTSSS--EEEESCGGTTSSTSTTESEEEESSSESSHHHHHHHHTTSSTT
T ss_pred ChHHC--CCcEEEEECCCCHHHHHHHHHHhhccCce--EEEeeccccccccccccccccccccCCCHHHHHHHhhcCCCC
Confidence 56654 89999999999999999999999987774 899999999999999999999999999999999999999999
Q ss_pred C
Q 042857 1186 G 1186 (1404)
Q Consensus 1186 G 1186 (1404)
|
T Consensus 78 g 78 (78)
T PF00271_consen 78 G 78 (78)
T ss_dssp T
T ss_pred C
Confidence 8
No 113
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.38 E-value=4e-12 Score=126.97 Aligned_cols=137 Identities=26% Similarity=0.280 Sum_probs=100.5
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEeCCCChH-HHHHHHHHHCC-CCcEEEEecchhHHHHHHHhhhc
Q 042857 775 KNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLSTMP-NWLAEFALWAP-NLNVVEYHGCAKARAIIRQYEWH 852 (1404)
Q Consensus 775 ~~~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP~Sll~-nW~rEf~kw~P-~l~Vvvy~G~~~~R~~ir~~E~~ 852 (1404)
.++++..++|.|||.+++.++..+... ...+++||+||...+. +|...+..|.. ...+..+++..........
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~~~~-~~~~~~lv~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 75 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELLDS-LKGGQVLVLAPTRELANQVAERLKELFGEGIKVGYLIGGTSIKQQEKL---- 75 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHHhc-ccCCCEEEEcCcHHHHHHHHHHHHHHhhCCcEEEEEecCcchhHHHHH----
Confidence 368999999999999999999988765 3456899999998775 45666777764 4677777775544432211
Q ss_pred cCCCCccccccCCCCceEEEeeHHHHHhhhcc--ccCCCceEEEEccccccCCCccHHH---HHHhhcccccEEEEeccC
Q 042857 853 ASDPDNLNKKTSSYKFNVLLTTYEMILADSSH--LRGVPWEVLVVDEGHRLKNSGSKLF---SLLNSFSFQHRVLLTGTP 927 (1404)
Q Consensus 853 ~~~~~~~~~~~~~~kfdVvITTYe~l~~d~~~--L~~i~w~lVIVDEAHrlKN~~Sk~~---~~L~~l~~~~rLLLTGTP 927 (1404)
.....+|+++||+.+...... +....|++|||||+|.+.+...... ...........++|||||
T Consensus 76 -----------~~~~~~i~i~t~~~~~~~~~~~~~~~~~~~~iiiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~saTp 144 (144)
T cd00046 76 -----------LSGKTDIVVGTPGRLLDELERLKLSLKKLDLLILDEAHRLLNQGFGLLGLKILLKLPKDRQVLLLSATP 144 (144)
T ss_pred -----------hcCCCCEEEECcHHHHHHHHcCCcchhcCCEEEEeCHHHHhhcchHHHHHHHHhhCCccceEEEEeccC
Confidence 124678999999988765433 2345789999999999988665443 344455677889999998
No 114
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=99.38 E-value=5.1e-12 Score=145.14 Aligned_cols=310 Identities=19% Similarity=0.250 Sum_probs=202.1
Q ss_pred HHHHHHHHHHHhhccCCcEEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEeCCCChHH-HHHHHHHHCCCC--cEEE
Q 042857 759 HQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLSTMPN-WLAEFALWAPNL--NVVE 835 (1404)
Q Consensus 759 yQlegVnwL~~~~~~~~~~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP~Sll~n-W~rEf~kw~P~l--~Vvv 835 (1404)
-|..|+--++ +|.+++.....|.|||.+....++..........-+||++|...+.+ -..-+..|...+ ++..
T Consensus 52 IQqraI~p~i----~G~dv~~qaqsgTgKt~af~i~iLq~iD~~~ke~qalilaPtreLa~qi~~v~~~lg~~~~~~v~~ 127 (397)
T KOG0327|consen 52 IQQRAILPCI----KGHDVIAQAQSGTGKTAAFLISILQQIDMSVKETQALILAPTRELAQQIQKVVRALGDHMDVSVHA 127 (397)
T ss_pred HHhccccccc----cCCceeEeeeccccchhhhHHHHHhhcCcchHHHHHHHhcchHHHHHHHHHHHHhhhcccceeeee
Confidence 4555554333 37899999999999999866555554322222224799999998854 344455555444 4444
Q ss_pred EecchhHH-HHHHHhhhccCCCCccccccCCCCceEEEeeHHHHHh--hhccccCCCceEEEEccccccCC--CccHHHH
Q 042857 836 YHGCAKAR-AIIRQYEWHASDPDNLNKKTSSYKFNVLLTTYEMILA--DSSHLRGVPWEVLVVDEGHRLKN--SGSKLFS 910 (1404)
Q Consensus 836 y~G~~~~R-~~ir~~E~~~~~~~~~~~~~~~~kfdVvITTYe~l~~--d~~~L~~i~w~lVIVDEAHrlKN--~~Sk~~~ 910 (1404)
..|....+ ... .......+|++.|+..+.. +...|..-...+.|+|||..+.. ...+++.
T Consensus 128 ~igg~~~~~~~~---------------~i~~~~~hivvGTpgrV~dml~~~~l~~~~iKmfvlDEaDEmLs~gfkdqI~~ 192 (397)
T KOG0327|consen 128 CIGGTNVRREDQ---------------ALLKDKPHIVVGTPGRVFDMLNRGSLSTDGIKMFVLDEADEMLSRGFKDQIYD 192 (397)
T ss_pred ecCcccchhhhh---------------hhhccCceeecCCchhHHHhhccccccccceeEEeecchHhhhccchHHHHHH
Confidence 44433322 111 1122357899999966654 23356666788999999998764 3456677
Q ss_pred HHhhcccc-cEEEEeccCCCCChHHHHHHhhhhCCCCCCChhHHHHHhccccchHHHHHHHHhhhhhhhhhhHhhhhhcC
Q 042857 911 LLNSFSFQ-HRVLLTGTPLQNNIGEMYNLLNFLQPASFPSLSSFEEKFNDLTTTQKVEELKKLVAPHMLRRLKKDAMQNI 989 (1404)
Q Consensus 911 ~L~~l~~~-~rLLLTGTPlqNnl~EL~sLL~fL~P~~f~s~~~F~~~f~d~~~~~~i~~L~~lL~p~mLRR~K~dV~~~L 989 (1404)
....+... ..+++|||- +.|+. .+-+.||
T Consensus 193 if~~lp~~vQv~l~SAT~----p~~vl----------------------------------~vt~~f~------------ 222 (397)
T KOG0327|consen 193 IFQELPSDVQVVLLSATM----PSDVL----------------------------------EVTKKFM------------ 222 (397)
T ss_pred HHHHcCcchhheeecccC----cHHHH----------------------------------HHHHHhc------------
Confidence 77777644 346688874 11110 0000010
Q ss_pred CCceEEEEEecCCHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCcHHHHHHHHHhh
Q 042857 990 PPKTERMVPVELSSIQAEYYRAMLTKNYQILRNIGKGVAQQSMLNIVMQLRKVCNHPYLIPGTEPDSGSVEFLHEMRIKA 1069 (1404)
Q Consensus 990 Ppk~e~iV~V~LS~~Qk~~Y~~il~~n~~~L~~~~kg~~~~sllnilm~LRK~cnHP~L~~~~e~~~~~~e~l~~~~i~~ 1069 (1404)
. ....+.+.-...+.+..+.+ |.. +..
T Consensus 223 -~-~pv~i~vkk~~ltl~gikq~----------------------------------~i~-----------------v~k 249 (397)
T KOG0327|consen 223 -R-EPVRILVKKDELTLEGIKQF----------------------------------YIN-----------------VEK 249 (397)
T ss_pred -c-CceEEEecchhhhhhheeee----------------------------------eee-----------------ccc
Confidence 0 00111111111111111000 000 000
Q ss_pred hhHHHHHHHHHHHHHHcCCeEEEEecchhHHHHHHHHHhhhcCCceEEEEeCCCCHHHHHHHHHHHhcCCCceEEEeecc
Q 042857 1070 SAKLTLLHSMLKVLYKEGHRVLIFSQMTKLLDILEDYLNIEFGPKTYERVDGSVSVGDRQAAITRFNQDKSRFVFLLSTR 1149 (1404)
Q Consensus 1070 SgKl~~L~kLL~kl~~~G~KVLIFSq~~~~LDiLed~L~~~f~g~~y~rLdGs~s~~eRq~~Id~Fn~~~s~~VfLLSTr 1149 (1404)
..|+..|..+.. +-...+||++..+-++.|.+.|..+ ++....++|.+.+.+|..++..|+.+.+. +||+|.
T Consensus 250 ~~k~~~l~dl~~----~~~q~~if~nt~r~v~~l~~~L~~~--~~~~s~~~~d~~q~~R~~~~~ef~~gssr--vlIttd 321 (397)
T KOG0327|consen 250 EEKLDTLCDLYR----RVTQAVIFCNTRRKVDNLTDKLRAH--GFTVSAIHGDMEQNERDTLMREFRSGSSR--VLITTD 321 (397)
T ss_pred cccccHHHHHHH----hhhcceEEecchhhHHHHHHHHhhC--CceEEEeecccchhhhhHHHHHhhcCCce--EEeecc
Confidence 116666666666 3346899999999999999999654 89999999999999999999999988887 899999
Q ss_pred cccccccccCCCEEEEEcCCCCHhHHHHHHHhhhccCCCCcEEEEEEeeCC
Q 042857 1150 SCGLGINLATADTVIIYDSDFNPHADIQAMNRAHRIGQSKRLLVYRLVVRA 1200 (1404)
Q Consensus 1150 AgG~GINL~~AdtVIi~DsdWNP~~d~QAigRahRiGQ~k~V~VYrLvt~~ 1200 (1404)
..+.||+++.++.||+||.|-|..+|++++||++|.|-+. .+..+++..
T Consensus 322 l~argidv~~~slvinydlP~~~~~yihR~gr~gr~grkg--~~in~v~~~ 370 (397)
T KOG0327|consen 322 LLARGIDVQQVSLVVNYDLPARKENYIHRIGRAGRFGRKG--VAINFVTEE 370 (397)
T ss_pred ccccccchhhcceeeeeccccchhhhhhhcccccccCCCc--eeeeeehHh
Confidence 9999999999999999999999999999999999999643 345566654
No 115
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.36 E-value=4.2e-10 Score=143.51 Aligned_cols=123 Identities=20% Similarity=0.252 Sum_probs=106.6
Q ss_pred hhHHHHHHHHHHHHHHcCCeEEEEecchhHHHHHHHHHhhhcCCceEEEEeCCCCHHHHHHHHHHHhcCCCceEEEeecc
Q 042857 1070 SAKLTLLHSMLKVLYKEGHRVLIFSQMTKLLDILEDYLNIEFGPKTYERVDGSVSVGDRQAAITRFNQDKSRFVFLLSTR 1149 (1404)
Q Consensus 1070 SgKl~~L~kLL~kl~~~G~KVLIFSq~~~~LDiLed~L~~~f~g~~y~rLdGs~s~~eRq~~Id~Fn~~~s~~VfLLSTr 1149 (1404)
.+++..|...|..+...|.+||||+.....++.|..+|... |+.+..+||.++..+|..++..|..+. ..+|++|.
T Consensus 429 ~~q~~~L~~~L~~~~~~g~~viIf~~t~~~ae~L~~~L~~~--gi~~~~~h~~~~~~~R~~~l~~f~~g~--i~vlV~t~ 504 (652)
T PRK05298 429 KGQVDDLLSEIRKRVAKGERVLVTTLTKRMAEDLTDYLKEL--GIKVRYLHSDIDTLERVEIIRDLRLGE--FDVLVGIN 504 (652)
T ss_pred cccHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHhhc--ceeEEEEECCCCHHHHHHHHHHHHcCC--ceEEEEeC
Confidence 56788888888888899999999999999999999999876 788999999999999999999997544 45889999
Q ss_pred cccccccccCCCEEEEEcCC-----CCHhHHHHHHHhhhccCCCCcEEEEEEeeC
Q 042857 1150 SCGLGINLATADTVIIYDSD-----FNPHADIQAMNRAHRIGQSKRLLVYRLVVR 1199 (1404)
Q Consensus 1150 AgG~GINL~~AdtVIi~Dsd-----WNP~~d~QAigRahRiGQ~k~V~VYrLvt~ 1199 (1404)
..+.|++++.+++||++|.+ -++..++|++||++|- ... .++.|+..
T Consensus 505 ~L~rGfdlp~v~lVii~d~eifG~~~~~~~yiqr~GR~gR~-~~G--~~i~~~~~ 556 (652)
T PRK05298 505 LLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNG--KVILYADK 556 (652)
T ss_pred HHhCCccccCCcEEEEeCCcccccCCCHHHHHHHhccccCC-CCC--EEEEEecC
Confidence 99999999999999999974 5889999999999994 333 35555554
No 116
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=99.31 E-value=1e-10 Score=154.45 Aligned_cols=111 Identities=16% Similarity=0.125 Sum_probs=87.3
Q ss_pred cCCeEEEEecchhHHHHHHHHHhhh-cCCceEEEEeCCCCHHHHHHHHHHHhcCCCceEEEeecccccccccccCCCEEE
Q 042857 1086 EGHRVLIFSQMTKLLDILEDYLNIE-FGPKTYERVDGSVSVGDRQAAITRFNQDKSRFVFLLSTRSCGLGINLATADTVI 1164 (1404)
Q Consensus 1086 ~G~KVLIFSq~~~~LDiLed~L~~~-f~g~~y~rLdGs~s~~eRq~~Id~Fn~~~s~~VfLLSTrAgG~GINL~~AdtVI 1164 (1404)
....+|||+.....++.+.+.|... ++...+.-++|++++.+|+.+++.+ ...-+|++|..++.||++.+.++||
T Consensus 285 ~~GdILVFLpg~~EIe~lae~L~~~~~~~~~VlpLhg~Ls~~eQ~~Vf~~~----g~rkIIVATNIAEtSITIpgI~yVI 360 (1294)
T PRK11131 285 GPGDILIFMSGEREIRDTADALNKLNLRHTEILPLYARLSNSEQNRVFQSH----SGRRIVLATNVAETSLTVPGIKYVI 360 (1294)
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHhcCCCcceEeecccCCCHHHHHHHhccc----CCeeEEEeccHHhhccccCcceEEE
Confidence 3468999999999999999999865 2233466789999999999886642 2345899999999999999999999
Q ss_pred EEc---------------CCCCH---hHHHHHHHhhhccCCCCcEEEEEEeeCCCHH
Q 042857 1165 IYD---------------SDFNP---HADIQAMNRAHRIGQSKRLLVYRLVVRASVE 1203 (1404)
Q Consensus 1165 i~D---------------sdWNP---~~d~QAigRahRiGQ~k~V~VYrLvt~~TvE 1203 (1404)
.++ .+-.| ..+.||.||++|.+ +=.+|+|++...++
T Consensus 361 D~Gl~k~~~Yd~~~~~~~Lp~~~iSkasa~QRaGRAGR~~---~G~c~rLyte~d~~ 414 (1294)
T PRK11131 361 DPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVS---EGICIRLYSEDDFL 414 (1294)
T ss_pred ECCCccccccccccCcccCCeeecCHhhHhhhccccCCCC---CcEEEEeCCHHHHH
Confidence 975 22223 67999999999984 45688999875443
No 117
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.31 E-value=7.5e-11 Score=152.38 Aligned_cols=310 Identities=20% Similarity=0.198 Sum_probs=212.1
Q ss_pred CCCHHHHHHHHHHHHhhccCCcEEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEeCCC-ChHHHHHHHHHHC-CCCc
Q 042857 755 ALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLS-TMPNWLAEFALWA-PNLN 832 (1404)
Q Consensus 755 ~L~pyQlegVnwL~~~~~~~~~~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP~S-ll~nW~rEf~kw~-P~l~ 832 (1404)
.+||-|.++|+-++. |..+++-..+|-||.+....- ..-..+-+|||-|+- ++.- ++.... .++.
T Consensus 264 ~FR~~Q~eaI~~~l~----Gkd~fvlmpTG~GKSLCYQlP------A~l~~gitvVISPL~SLm~D---Qv~~L~~~~I~ 330 (941)
T KOG0351|consen 264 GFRPNQLEAINATLS----GKDCFVLMPTGGGKSLCYQLP------ALLLGGVTVVISPLISLMQD---QVTHLSKKGIP 330 (941)
T ss_pred cCChhHHHHHHHHHc----CCceEEEeecCCceeeEeecc------ccccCCceEEeccHHHHHHH---HHHhhhhcCcc
Confidence 589999999985554 899999999999998754211 111234578999974 4432 333332 3677
Q ss_pred EEEEecchhHHHHHHHhhhccCCCCccccccCCCCceEEEeeHHHHHhhhccc---c----CCCceEEEEccccccCCCc
Q 042857 833 VVEYHGCAKARAIIRQYEWHASDPDNLNKKTSSYKFNVLLTTYEMILADSSHL---R----GVPWEVLVVDEGHRLKNSG 905 (1404)
Q Consensus 833 Vvvy~G~~~~R~~ir~~E~~~~~~~~~~~~~~~~kfdVvITTYe~l~~d~~~L---~----~i~w~lVIVDEAHrlKN~~ 905 (1404)
...+++..........+..-. ......+|+-.|+|.+......+ . .-...++||||||....++
T Consensus 331 a~~L~s~q~~~~~~~i~q~l~---------~~~~~ikilYvtPE~v~~~~~l~~~~~~L~~~~~lal~vIDEAHCVSqWg 401 (941)
T KOG0351|consen 331 ACFLSSIQTAAERLAILQKLA---------NGNPIIKILYVTPEKVVASEGLLESLADLYARGLLALFVIDEAHCVSQWG 401 (941)
T ss_pred eeeccccccHHHHHHHHHHHh---------CCCCeEEEEEeCHHHhhcccchhhHHHhccCCCeeEEEEecHHHHhhhhc
Confidence 777777766654333222111 11247889999999997653222 1 1126899999999886544
Q ss_pred c-------HHHHHHhhcccccEEEEeccCCCCChHHHHHHhhhhCCCCCCChhHHHHHhccccchHHHHHHHHhhhhhhh
Q 042857 906 S-------KLFSLLNSFSFQHRVLLTGTPLQNNIGEMYNLLNFLQPASFPSLSSFEEKFNDLTTTQKVEELKKLVAPHML 978 (1404)
Q Consensus 906 S-------k~~~~L~~l~~~~rLLLTGTPlqNnl~EL~sLL~fL~P~~f~s~~~F~~~f~d~~~~~~i~~L~~lL~p~mL 978 (1404)
. ++......+.....|.||||--..--.++...|+.-+|..|.+.
T Consensus 402 HdFRp~Yk~l~~l~~~~~~vP~iALTATAT~~v~~DIi~~L~l~~~~~~~~s---------------------------- 453 (941)
T KOG0351|consen 402 HDFRPSYKRLGLLRIRFPGVPFIALTATATERVREDVIRSLGLRNPELFKSS---------------------------- 453 (941)
T ss_pred ccccHHHHHHHHHHhhCCCCCeEEeehhccHHHHHHHHHHhCCCCcceeccc----------------------------
Confidence 2 23333333444456889999877777777777777776643211
Q ss_pred hhhHhhhhhcCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCc
Q 042857 979 RRLKKDAMQNIPPKTERMVPVELSSIQAEYYRAMLTKNYQILRNIGKGVAQQSMLNIVMQLRKVCNHPYLIPGTEPDSGS 1058 (1404)
Q Consensus 979 RR~K~dV~~~LPpk~e~iV~V~LS~~Qk~~Y~~il~~n~~~L~~~~kg~~~~sllnilm~LRK~cnHP~L~~~~e~~~~~ 1058 (1404)
..++.-.+-|....+ ...++.++...+
T Consensus 454 ---------fnR~NL~yeV~~k~~--------------------------~~~~~~~~~~~~------------------ 480 (941)
T KOG0351|consen 454 ---------FNRPNLKYEVSPKTD--------------------------KDALLDILEESK------------------ 480 (941)
T ss_pred ---------CCCCCceEEEEeccC--------------------------ccchHHHHHHhh------------------
Confidence 122222333332222 001111111111
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHcCCeEEEEecchhHHHHHHHHHhhhcCCceEEEEeCCCCHHHHHHHHHHHhcC
Q 042857 1059 VEFLHEMRIKASAKLTLLHSMLKVLYKEGHRVLIFSQMTKLLDILEDYLNIEFGPKTYERVDGSVSVGDRQAAITRFNQD 1138 (1404)
Q Consensus 1059 ~e~l~~~~i~~SgKl~~L~kLL~kl~~~G~KVLIFSq~~~~LDiLed~L~~~f~g~~y~rLdGs~s~~eRq~~Id~Fn~~ 1138 (1404)
....+.-.||||....+++.+..+|... ++....+|++++..+|+.+-..|..+
T Consensus 481 ------------------------~~~~~~s~IIYC~sr~~ce~vs~~L~~~--~~~a~~YHAGl~~~~R~~Vq~~w~~~ 534 (941)
T KOG0351|consen 481 ------------------------LRHPDQSGIIYCLSRKECEQVSAVLRSL--GKSAAFYHAGLPPKERETVQKAWMSD 534 (941)
T ss_pred ------------------------hcCCCCCeEEEeCCcchHHHHHHHHHHh--chhhHhhhcCCCHHHHHHHHHHHhcC
Confidence 1234567899999999999999999986 68888999999999999999999987
Q ss_pred CCceEEEeecccccccccccCCCEEEEEcCCCCHhHHHHHHHhhhccCCCCcEEEEE
Q 042857 1139 KSRFVFLLSTRSCGLGINLATADTVIIYDSDFNPHADIQAMNRAHRIGQSKRLLVYR 1195 (1404)
Q Consensus 1139 ~s~~VfLLSTrAgG~GINL~~AdtVIi~DsdWNP~~d~QAigRahRiGQ~k~V~VYr 1195 (1404)
.-. +++.|=|.|.|||-.....||+|..|-+-.-|.|..|||+|-|+...+..|+
T Consensus 535 ~~~--VivATVAFGMGIdK~DVR~ViH~~lPks~E~YYQE~GRAGRDG~~s~C~l~y 589 (941)
T KOG0351|consen 535 KIR--VIVATVAFGMGIDKPDVRFVIHYSLPKSFEGYYQEAGRAGRDGLPSSCVLLY 589 (941)
T ss_pred CCe--EEEEEeeccCCCCCCceeEEEECCCchhHHHHHHhccccCcCCCcceeEEec
Confidence 744 7889999999999999999999999999999999999999999977665554
No 118
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.31 E-value=1.7e-10 Score=152.71 Aligned_cols=111 Identities=14% Similarity=0.129 Sum_probs=89.2
Q ss_pred cCCeEEEEecchhHHHHHHHHHhhh-cCCceEEEEeCCCCHHHHHHHHHHHhcCCCceEEEeecccccccccccCCCEEE
Q 042857 1086 EGHRVLIFSQMTKLLDILEDYLNIE-FGPKTYERVDGSVSVGDRQAAITRFNQDKSRFVFLLSTRSCGLGINLATADTVI 1164 (1404)
Q Consensus 1086 ~G~KVLIFSq~~~~LDiLed~L~~~-f~g~~y~rLdGs~s~~eRq~~Id~Fn~~~s~~VfLLSTrAgG~GINL~~AdtVI 1164 (1404)
....+|||......++.+...|... +++..+.-++|+++..+|+.+++.+ +. .-+|++|..++.||++...++||
T Consensus 278 ~~GdILVFLpg~~EI~~l~~~L~~~~~~~~~VlpLhg~Ls~~eQ~~vf~~~---~~-rkIVLATNIAEtSLTIpgV~yVI 353 (1283)
T TIGR01967 278 GPGDILIFLPGEREIRDAAEILRKRNLRHTEILPLYARLSNKEQQRVFQPH---SG-RRIVLATNVAETSLTVPGIHYVI 353 (1283)
T ss_pred CCCCEEEeCCCHHHHHHHHHHHHhcCCCCcEEEeccCCCCHHHHHHHhCCC---CC-ceEEEeccHHHhccccCCeeEEE
Confidence 3468999999999999999999864 2345678899999999999885543 22 35889999999999999999999
Q ss_pred EEcCC----C--------------CHhHHHHHHHhhhccCCCCcEEEEEEeeCCCHH
Q 042857 1165 IYDSD----F--------------NPHADIQAMNRAHRIGQSKRLLVYRLVVRASVE 1203 (1404)
Q Consensus 1165 i~Dsd----W--------------NP~~d~QAigRahRiGQ~k~V~VYrLvt~~TvE 1203 (1404)
-++.. + +-..+.||.||++|.| +-.+|||++...++
T Consensus 354 DsGl~r~~~yd~~~~~~~L~~~~ISkasa~QRaGRAGR~~---~G~cyRLyte~~~~ 407 (1283)
T TIGR01967 354 DTGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVA---PGICIRLYSEEDFN 407 (1283)
T ss_pred eCCCccccccccccCccccCCccCCHHHHHHHhhhhCCCC---CceEEEecCHHHHH
Confidence 87732 2 4468999999999998 55689999876544
No 119
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.29 E-value=8.5e-12 Score=114.80 Aligned_cols=81 Identities=32% Similarity=0.491 Sum_probs=73.9
Q ss_pred HHHHHHhhhcCCceEEEEeCCCCHHHHHHHHHHHhcCCCceEEEeecccccccccccCCCEEEEEcCCCCHhHHHHHHHh
Q 042857 1102 ILEDYLNIEFGPKTYERVDGSVSVGDRQAAITRFNQDKSRFVFLLSTRSCGLGINLATADTVIIYDSDFNPHADIQAMNR 1181 (1404)
Q Consensus 1102 iLed~L~~~f~g~~y~rLdGs~s~~eRq~~Id~Fn~~~s~~VfLLSTrAgG~GINL~~AdtVIi~DsdWNP~~d~QAigR 1181 (1404)
.|..+|... ++.+..++|.++..+|+.+++.|+.+.. .+|++|.++++|+|++.++.||+++++||+..+.|++||
T Consensus 2 ~l~~~l~~~--~~~~~~~~~~~~~~~r~~~~~~f~~~~~--~vli~t~~~~~Gi~~~~~~~vi~~~~~~~~~~~~Q~~gR 77 (82)
T smart00490 2 ELAELLKEL--GIKVARLHGGLSQEEREEILEKFNNGKI--KVLVATDVAERGLDLPGVDLVIIYDLPWSPASYIQRIGR 77 (82)
T ss_pred HHHHHHHHC--CCeEEEEECCCCHHHHHHHHHHHHcCCC--eEEEECChhhCCcChhcCCEEEEeCCCCCHHHHHHhhcc
Confidence 456677665 7889999999999999999999987665 588999999999999999999999999999999999999
Q ss_pred hhccC
Q 042857 1182 AHRIG 1186 (1404)
Q Consensus 1182 ahRiG 1186 (1404)
++|.|
T Consensus 78 ~~R~g 82 (82)
T smart00490 78 AGRAG 82 (82)
T ss_pred cccCC
Confidence 99987
No 120
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=99.27 E-value=6.1e-10 Score=141.74 Aligned_cols=119 Identities=14% Similarity=0.164 Sum_probs=96.1
Q ss_pred hhhHHHHHHHHHHHHHHcCCeEEEEecchhHHHHHHHHHhhhcCCceEEEEeCCCCHHHHH-HHHHHHhcCCCceEEEee
Q 042857 1069 ASAKLTLLHSMLKVLYKEGHRVLIFSQMTKLLDILEDYLNIEFGPKTYERVDGSVSVGDRQ-AAITRFNQDKSRFVFLLS 1147 (1404)
Q Consensus 1069 ~SgKl~~L~kLL~kl~~~G~KVLIFSq~~~~LDiLed~L~~~f~g~~y~rLdGs~s~~eRq-~~Id~Fn~~~s~~VfLLS 1147 (1404)
...|..++.+-+..+.+.|..|||-+..+..-+.|..+|... ++.+..++... .+++ ++|..= +..-.+-|+
T Consensus 550 ~~~k~~ai~~ei~~~~~~grPvLigt~si~~se~ls~~L~~~--gi~h~vLNak~--~~~Ea~iia~A---G~~g~VTIA 622 (970)
T PRK12899 550 EREKYHAIVAEIASIHRKGNPILIGTESVEVSEKLSRILRQN--RIEHTVLNAKN--HAQEAEIIAGA---GKLGAVTVA 622 (970)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHc--CCcceecccch--hhhHHHHHHhc---CCCCcEEEe
Confidence 468999999999999999999999999999999999999987 78888888763 2333 333332 333357899
Q ss_pred cccccccccccCCC--------EEEEEcCCCCHhHHHHHHHhhhccCCCCcEEEE
Q 042857 1148 TRSCGLGINLATAD--------TVIIYDSDFNPHADIQAMNRAHRIGQSKRLLVY 1194 (1404)
Q Consensus 1148 TrAgG~GINL~~Ad--------tVIi~DsdWNP~~d~QAigRahRiGQ~k~V~VY 1194 (1404)
|..+|+|.++.-.. +||.-..+-|...+.|..||++|.|.......|
T Consensus 623 TNmAGRGTDIkl~~~v~~~GGLhVIgTer~es~Rid~Ql~GRagRQGdpGss~f~ 677 (970)
T PRK12899 623 TNMAGRGTDIKLDEEAVAVGGLYVIGTSRHQSRRIDRQLRGRCARLGDPGAAKFF 677 (970)
T ss_pred eccccCCcccccCchHHhcCCcEEEeeccCchHHHHHHHhcccccCCCCCceeEE
Confidence 99999998875432 788889999999999999999999997765433
No 121
>PF11496 HDA2-3: Class II histone deacetylase complex subunits 2 and 3; InterPro: IPR021006 This entry contains the class II histone deacetylase complex subunits HDA2 and HDA3 is found in fungi. The member from Schizosaccharomyces pombe (Fission yeast) is referred to as Ccq1 in Q10432 from SWISSPROT. These proteins associate with HDA1 to generate the activity of the HDA1 histone deacetylase complex. HDA1 interacts with itself and with the HDA2-HDA3 subcomplex to form a probable tetramer and these interactions are necessary for catalytic activity. The HDA1 histone deacetylase complex is responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. HDA2 and HDA3 have a conserved coiled-coil domain towards their C terminus []. ; PDB: 3HGQ_C 3HGT_B.
Probab=99.26 E-value=6.8e-11 Score=136.64 Aligned_cols=218 Identities=22% Similarity=0.273 Sum_probs=132.8
Q ss_pred eEEEEEecCCHHHHHHHHHHHHHHHHHHHhhccchh-------------hHHHHHHHHHHHHHhCCCCCCCCCC-CCCCc
Q 042857 993 TERMVPVELSSIQAEYYRAMLTKNYQILRNIGKGVA-------------QQSMLNIVMQLRKVCNHPYLIPGTE-PDSGS 1058 (1404)
Q Consensus 993 ~e~iV~V~LS~~Qk~~Y~~il~~n~~~L~~~~kg~~-------------~~sllnilm~LRK~cnHP~L~~~~e-~~~~~ 1058 (1404)
.++.++++|+..|+++|..++.-.+..+.....+.. ...+..++.+|+.+|+||+|.-... +....
T Consensus 4 ~~y~lP~pmt~~QKdl~e~iislh~~~il~~~~~~~~~~~i~~~~~~~~~~~~~~~~~nl~~V~~HP~LlvdH~mPk~ll 83 (297)
T PF11496_consen 4 GEYYLPTPMTSFQKDLYEQIISLHYSDILKFCETNDSSESIDSLLDESLVQSMELLIENLRLVANHPSLLVDHYMPKQLL 83 (297)
T ss_dssp SEEEEEE---HHHHHHHHHHHHHTHHHHHHHHHSTTT--HHHH-------HHHHHHHHHHHHHHH-GGGT--TT--S-S-
T ss_pred ceEEEecCccHHHHHHHHHHHHHHHHHHHHHHcccCccccccchhhhhhHHHHHHHHHHHHHhccCccccccccCccccc
Confidence 467899999999999999999877665544321111 1455667789999999999964332 22222
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHH-----HHcCCeEEEEecchhHHHHHHHHHhhhcCCceEEEEeCCCCHHHHHHHH-
Q 042857 1059 VEFLHEMRIKASAKLTLLHSMLKVL-----YKEGHRVLIFSQMTKLLDILEDYLNIEFGPKTYERVDGSVSVGDRQAAI- 1132 (1404)
Q Consensus 1059 ~e~l~~~~i~~SgKl~~L~kLL~kl-----~~~G~KVLIFSq~~~~LDiLed~L~~~f~g~~y~rLdGs~s~~eRq~~I- 1132 (1404)
.....+.....|||+.+|..+|..+ ...+.++||.++..+++|+||.+|... ++.|.|++|..-..+....-
T Consensus 84 ~~e~~~~~~~tS~KF~~L~~Li~~li~~~~~~~~~~ilIv~~~~k~ldllE~~llGk--~~~~kr~sg~~l~~~~~~~~~ 161 (297)
T PF11496_consen 84 LSEPAEWLAYTSGKFQFLNDLIDSLIDRDRREYPLHILIVSRSGKELDLLEGLLLGK--KLNYKRYSGESLYDEKHKVPK 161 (297)
T ss_dssp STTHHHHHHHT-HHHHHHHHHHHHH-----TTSSEEEEEEE-STHHHHHHHHHHTTS--SSEEEESSS--S--S---S--
T ss_pred cchHHHHHHHcCchHHHHHHHHHHHHhhhcccCCceEEEEecCccHHHHHHHHHccC--CeeEEecCCCCCcCccccCCc
Confidence 2233455678999999999999999 666889999999999999999999864 89999999976554433222
Q ss_pred -----------HHHhcC--CCceEEEeecccccc----cccccCCCEEEEEcCCCCHhHHHHHHHhhhccCCCCcEEEEE
Q 042857 1133 -----------TRFNQD--KSRFVFLLSTRSCGL----GINLATADTVIIYDSDFNPHADIQAMNRAHRIGQSKRLLVYR 1195 (1404)
Q Consensus 1133 -----------d~Fn~~--~s~~VfLLSTrAgG~----GINL~~AdtVIi~DsdWNP~~d~QAigRahRiGQ~k~V~VYr 1195 (1404)
...... .+..++|+++.-... .++-...|.||-||+.+++....-..-|.+.-.+ +.+-|+|
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~i~L~ts~~l~~~~~~~~~~~~~d~IIsfD~~~d~~~p~i~~lR~~~~~~-~~~Piir 240 (297)
T PF11496_consen 162 NGNTESNSSNNSKKKDKGSLSVWIHLITSDQLYNNKPPLLSNYNFDLIISFDPSFDTSLPSIEQLRTQNRRN-RLCPIIR 240 (297)
T ss_dssp --------------------SEEEEEEESS---TTTS--TT-S-EEEEEE-SST--TTSHHHHHHH--------S--EEE
T ss_pred ccccccccccccccccccccceEEEEecCccccccCCCccccCCcCEEEEecCCCCCCChHHHHHHhhcCCC-CCCcEEE
Confidence 011111 124566666654433 1334567999999999999885544444443333 7899999
Q ss_pred EeeCCCHHHHHHHHHHHH
Q 042857 1196 LVVRASVEERILQLAKKK 1213 (1404)
Q Consensus 1196 Lvt~~TvEE~Ilq~a~~K 1213 (1404)
||..+|+|.-++......
T Consensus 241 Lv~~nSiEHi~L~~~~~~ 258 (297)
T PF11496_consen 241 LVPSNSIEHIELCFPKSS 258 (297)
T ss_dssp EEETTSHHHHHHHHTTTS
T ss_pred EeeCCCHHHHHHHccCcc
Confidence 999999999998876544
No 122
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.25 E-value=6.4e-10 Score=141.88 Aligned_cols=117 Identities=19% Similarity=0.217 Sum_probs=103.4
Q ss_pred hhhHHHHHHHHHHHHHHcCCeEEEEecchhHHHHHHHHHhhhcCCceEEEEeCCCCHHHHHHHHHHHhcCCCceEEEeec
Q 042857 1069 ASAKLTLLHSMLKVLYKEGHRVLIFSQMTKLLDILEDYLNIEFGPKTYERVDGSVSVGDRQAAITRFNQDKSRFVFLLST 1148 (1404)
Q Consensus 1069 ~SgKl~~L~kLL~kl~~~G~KVLIFSq~~~~LDiLed~L~~~f~g~~y~rLdGs~s~~eRq~~Id~Fn~~~s~~VfLLST 1148 (1404)
...|+.+|.+.+..+...|..||||+.+....+.|..+|... ++.+..|++ .+.+|++.|..|...... ++|+|
T Consensus 580 ~~eK~~Ali~~I~~~~~~grpVLIft~Sve~sE~Ls~~L~~~--gI~h~vLna--kq~~REa~Iia~AG~~g~--VtIAT 653 (1025)
T PRK12900 580 RREKYNAIVLKVEELQKKGQPVLVGTASVEVSETLSRMLRAK--RIAHNVLNA--KQHDREAEIVAEAGQKGA--VTIAT 653 (1025)
T ss_pred HHHHHHHHHHHHHHHhhCCCCEEEEeCcHHHHHHHHHHHHHc--CCCceeecC--CHHHhHHHHHHhcCCCCe--EEEec
Confidence 357999999999999999999999999999999999999987 889999997 688999999999654444 89999
Q ss_pred ccccccccccCCC--------EEEEEcCCCCHhHHHHHHHhhhccCCCCcE
Q 042857 1149 RSCGLGINLATAD--------TVIIYDSDFNPHADIQAMNRAHRIGQSKRL 1191 (1404)
Q Consensus 1149 rAgG~GINL~~Ad--------tVIi~DsdWNP~~d~QAigRahRiGQ~k~V 1191 (1404)
..+|+|+++.-.+ +||.++.+-+...|.|++||++|.|.....
T Consensus 654 NMAGRGtDIkl~~~V~~vGGL~VIgterhes~Rid~Ql~GRtGRqGdpGsS 704 (1025)
T PRK12900 654 NMAGRGTDIKLGEGVRELGGLFILGSERHESRRIDRQLRGRAGRQGDPGES 704 (1025)
T ss_pred cCcCCCCCcCCccchhhhCCceeeCCCCCchHHHHHHHhhhhhcCCCCcce
Confidence 9999999998443 348888899999999999999999987765
No 123
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.24 E-value=3.7e-10 Score=145.80 Aligned_cols=356 Identities=18% Similarity=0.177 Sum_probs=210.7
Q ss_pred CCCCHHHHHHHHHHHHhhccCCcEEEEcCCCchHHHHHHHHHHHHHhh-ccCCCcEEEEeCCCCh-HHHHHHHHHHCCCC
Q 042857 754 GALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCE-FKAKLPCLVLVPLSTM-PNWLAEFALWAPNL 831 (1404)
Q Consensus 754 ~~L~pyQlegVnwL~~~~~~~~~~ILADEMGLGKTiqaIa~L~~L~~~-~~~~gP~LIVvP~Sll-~nW~rEf~kw~P~l 831 (1404)
...+++|..+++++...+..+..++|-.++|.|||..++.+..+.... ......++.|.|..++ ..-.+.+..++...
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~~~~~~r~i~vlP~~t~ie~~~~r~~~~~~~~ 273 (733)
T COG1203 194 HEGYELQEKALELILRLEKRSLLVVLEAPTGYGKTEASLILALALLDEKIKLKSRVIYVLPFRTIIEDMYRRAKEIFGLF 273 (733)
T ss_pred chhhHHHHHHHHHHHhcccccccEEEEeCCCCChHHHHHHHHHHHhhccccccceEEEEccHHHHHHHHHHHHHhhhccc
Confidence 346899999999998887766688999999999999999888887766 2344568888888766 66777788887655
Q ss_pred cEEEE--ecchhHHHHHHHhhhccCCCCccccccCCCCceEEEeeHHHHHhhh------ccccCCCceEEEEccccccCC
Q 042857 832 NVVEY--HGCAKARAIIRQYEWHASDPDNLNKKTSSYKFNVLLTTYEMILADS------SHLRGVPWEVLVVDEGHRLKN 903 (1404)
Q Consensus 832 ~Vvvy--~G~~~~R~~ir~~E~~~~~~~~~~~~~~~~kfdVvITTYe~l~~d~------~~L~~i~w~lVIVDEAHrlKN 903 (1404)
.+..- +|.....-.. ..+................-+.+.+++...+.... ..+..+...++|+||+|-+-.
T Consensus 274 ~~~~~~~h~~~~~~~~~-~~~~~~~~~~~~~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~S~vIlDE~h~~~~ 352 (733)
T COG1203 274 SVIGKSLHSSSKEPLLL-EPDQDILLTLTTNDSYKKLLLALIVVTPIQILIFSVKGFKFEFLALLLTSLVILDEVHLYAD 352 (733)
T ss_pred ccccccccccccchhhh-ccccccceeEEecccccceeccccccCHhHhhhhhccccchHHHHHHHhhchhhccHHhhcc
Confidence 55444 5554433211 11100000000001111122333333333332211 113334567999999999976
Q ss_pred C-ccHHH-HHHhhcc--cccEEEEeccCCCCChHHHHHHhhhhCCCCCCChhHHHHHhccccchHHHHHHHHhhhhhhhh
Q 042857 904 S-GSKLF-SLLNSFS--FQHRVLLTGTPLQNNIGEMYNLLNFLQPASFPSLSSFEEKFNDLTTTQKVEELKKLVAPHMLR 979 (1404)
Q Consensus 904 ~-~Sk~~-~~L~~l~--~~~rLLLTGTPlqNnl~EL~sLL~fL~P~~f~s~~~F~~~f~d~~~~~~i~~L~~lL~p~mLR 979 (1404)
. ..... .++..+. ....|+||||+-. .|. ..|..++.....
T Consensus 353 ~~~~~~l~~~i~~l~~~g~~ill~SATlP~----------------------~~~------------~~l~~~~~~~~~- 397 (733)
T COG1203 353 ETMLAALLALLEALAEAGVPVLLMSATLPP----------------------FLK------------EKLKKALGKGRE- 397 (733)
T ss_pred cchHHHHHHHHHHHHhCCCCEEEEecCCCH----------------------HHH------------HHHHHHHhcccc-
Confidence 5 23322 2222232 4567899999710 011 011111110000
Q ss_pred hhHhhhhhcCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCcH
Q 042857 980 RLKKDAMQNIPPKTERMVPVELSSIQAEYYRAMLTKNYQILRNIGKGVAQQSMLNIVMQLRKVCNHPYLIPGTEPDSGSV 1059 (1404)
Q Consensus 980 R~K~dV~~~LPpk~e~iV~V~LS~~Qk~~Y~~il~~n~~~L~~~~kg~~~~sllnilm~LRK~cnHP~L~~~~e~~~~~~ 1059 (1404)
+. .+.. .++ .++.|.+......
T Consensus 398 -----~~--~~~~-----~~~-----------------------------------------~~~e~~~~~~~~~----- 419 (733)
T COG1203 398 -----VV--ENAK-----FCP-----------------------------------------KEDEPGLKRKERV----- 419 (733)
T ss_pred -----ee--cccc-----ccc-----------------------------------------cccccccccccch-----
Confidence 00 0000 000 0001111000000
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHcCCeEEEEecchhHHHHHHHHHhhhcCCceEEEEeCCCCHHHHHHHHHHHhc--
Q 042857 1060 EFLHEMRIKASAKLTLLHSMLKVLYKEGHRVLIFSQMTKLLDILEDYLNIEFGPKTYERVDGSVSVGDRQAAITRFNQ-- 1137 (1404)
Q Consensus 1060 e~l~~~~i~~SgKl~~L~kLL~kl~~~G~KVLIFSq~~~~LDiLed~L~~~f~g~~y~rLdGs~s~~eRq~~Id~Fn~-- 1137 (1404)
. +..... ..+...+..-...|.+|+|.++.+..+-.+...|+.. +..+..+|+.....+|.+.++....
T Consensus 420 ~------~~~~~~-~~~~~~~~~~~~~~~kvlvI~NTV~~Aie~Y~~Lk~~--~~~v~LlHSRf~~~dR~~ke~~l~~~~ 490 (733)
T COG1203 420 D------VEDGPQ-EELIELISEEVKEGKKVLVIVNTVDRAIELYEKLKEK--GPKVLLLHSRFTLKDREEKERELKKLF 490 (733)
T ss_pred h------hhhhhh-HhhhhcchhhhccCCcEEEEEecHHHHHHHHHHHHhc--CCCEEEEecccchhhHHHHHHHHHHHH
Confidence 0 000000 1222333344567899999999999998888888876 3378999999999999999887653
Q ss_pred CCCceEEEeecccccccccccCCCEEEEEcCCCCHhHHHHHHHhhhccC--CCCcEEEEEEeeCCCHHHHHHHHHHHHHh
Q 042857 1138 DKSRFVFLLSTRSCGLGINLATADTVIIYDSDFNPHADIQAMNRAHRIG--QSKRLLVYRLVVRASVEERILQLAKKKLM 1215 (1404)
Q Consensus 1138 ~~s~~VfLLSTrAgG~GINL~~AdtVIi~DsdWNP~~d~QAigRahRiG--Q~k~V~VYrLvt~~TvEE~Ilq~a~~Kl~ 1215 (1404)
..+...++|+|.+...|+|+. .|.+|= |+ --....+||.||++|-| ....+.||-..-......+.++....++.
T Consensus 491 ~~~~~~IvVaTQVIEagvDid-fd~mIT-e~-aPidSLIQR~GRv~R~g~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 567 (733)
T COG1203 491 KQNEGFIVVATQVIEAGVDID-FDVLIT-EL-APIDSLIQRAGRVNRHGKKENGKIYVYNDEERGPYLKYSYEKLEKKLK 567 (733)
T ss_pred hccCCeEEEEeeEEEEEeccc-cCeeee-cC-CCHHHHHHHHHHHhhcccccCCceeEeecccCCCchhhhhhcchhhhc
Confidence 223335889999999999986 665542 22 23567899999999999 67778888888888888888776665554
No 124
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=99.23 E-value=8.1e-10 Score=138.81 Aligned_cols=312 Identities=20% Similarity=0.253 Sum_probs=180.9
Q ss_pred hhccCCcEEEEcCCCchHHHHHHHHHHHHHhhcc-------CCCcEEEEeCCCCh-----HHHHHHHHHHCCCCcEEEEe
Q 042857 770 CWHKSKNVILADEMGLGKTVSACAFISSLYCEFK-------AKLPCLVLVPLSTM-----PNWLAEFALWAPNLNVVEYH 837 (1404)
Q Consensus 770 ~~~~~~~~ILADEMGLGKTiqaIa~L~~L~~~~~-------~~gP~LIVvP~Sll-----~nW~rEf~kw~P~l~Vvvy~ 837 (1404)
.|..+.|+|++..+|.|||..+...|..++.++. ..-.++-|+|.-.| .+|-.-|.-| ++.|..+.
T Consensus 122 aY~SneNMLIcAPTGsGKT~la~L~ILr~ik~~~~~~~i~k~~fKiVYIaPmKALa~Em~~~~~kkl~~~--gi~v~ELT 199 (1230)
T KOG0952|consen 122 AYKSNENMLICAPTGSGKTVLAELCILRTIKEHEEQGDIAKDDFKIVYIAPMKALAAEMVDKFSKKLAPL--GISVRELT 199 (1230)
T ss_pred hhcCCCCEEEECCCCCCchHHHHHHHHHHHHhhccccccccCCceEEEEechHHHHHHHHHHHhhhcccc--cceEEEec
Confidence 4667899999999999999999888888776521 22357889997544 3343333322 68899999
Q ss_pred cchhHHHHHHHhhhccCCCCccccccCCCCceEEEeeHHHHH---h----hhccccCCCceEEEEccccccCCCcc----
Q 042857 838 GCAKARAIIRQYEWHASDPDNLNKKTSSYKFNVLLTTYEMIL---A----DSSHLRGVPWEVLVVDEGHRLKNSGS---- 906 (1404)
Q Consensus 838 G~~~~R~~ir~~E~~~~~~~~~~~~~~~~kfdVvITTYe~l~---~----d~~~L~~i~w~lVIVDEAHrlKN~~S---- 906 (1404)
|+...-. ......+|+|||+|..- + +..++.. ..+|||||.|-|...-.
T Consensus 200 GD~ql~~------------------tei~~tqiiVTTPEKwDvvTRk~~~d~~l~~~--V~LviIDEVHlLhd~RGpvlE 259 (1230)
T KOG0952|consen 200 GDTQLTK------------------TEIADTQIIVTTPEKWDVVTRKSVGDSALFSL--VRLVIIDEVHLLHDDRGPVLE 259 (1230)
T ss_pred CcchhhH------------------HHHHhcCEEEecccceeeeeeeeccchhhhhh--eeeEEeeeehhhcCcccchHH
Confidence 9764322 11246789999998652 1 2223332 46999999999976432
Q ss_pred -HHHHHHhhc----ccccEEEEeccCCCCChHHHHHHhhhhCCCCCCChhHHHHHhccccchHHHHHHHHhhhhhhhhhh
Q 042857 907 -KLFSLLNSF----SFQHRVLLTGTPLQNNIGEMYNLLNFLQPASFPSLSSFEEKFNDLTTTQKVEELKKLVAPHMLRRL 981 (1404)
Q Consensus 907 -k~~~~L~~l----~~~~rLLLTGTPlqNnl~EL~sLL~fL~P~~f~s~~~F~~~f~d~~~~~~i~~L~~lL~p~mLRR~ 981 (1404)
-..+.++.. ..-+.++||||- . |+.|+ -.||.-......-.|...|...
T Consensus 260 tiVaRtlr~vessqs~IRivgLSATl-P-N~eDv---A~fL~vn~~~glfsFd~~yRPv--------------------- 313 (1230)
T KOG0952|consen 260 TIVARTLRLVESSQSMIRIVGLSATL-P-NYEDV---ARFLRVNPYAGLFSFDQRYRPV--------------------- 313 (1230)
T ss_pred HHHHHHHHHHHhhhhheEEEEeeccC-C-CHHHH---HHHhcCCCccceeeeccccccc---------------------
Confidence 233333222 233457799994 2 34444 3455544444444455444321
Q ss_pred HhhhhhcCCCceEEEEEecCC--HHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCcH
Q 042857 982 KKDAMQNIPPKTERMVPVELS--SIQAEYYRAMLTKNYQILRNIGKGVAQQSMLNIVMQLRKVCNHPYLIPGTEPDSGSV 1059 (1404)
Q Consensus 982 K~dV~~~LPpk~e~iV~V~LS--~~Qk~~Y~~il~~n~~~L~~~~kg~~~~sllnilm~LRK~cnHP~L~~~~e~~~~~~ 1059 (1404)
|.....+-+... ..|.+...
T Consensus 314 ---------pL~~~~iG~k~~~~~~~~~~~d------------------------------------------------- 335 (1230)
T KOG0952|consen 314 ---------PLTQGFIGIKGKKNRQQKKNID------------------------------------------------- 335 (1230)
T ss_pred ---------ceeeeEEeeecccchhhhhhHH-------------------------------------------------
Confidence 001111111100 00000000
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHcCCeEEEEecchhHHHHHHHHHhhh--cCC-------------------ceEEE
Q 042857 1060 EFLHEMRIKASAKLTLLHSMLKVLYKEGHRVLIFSQMTKLLDILEDYLNIE--FGP-------------------KTYER 1118 (1404)
Q Consensus 1060 e~l~~~~i~~SgKl~~L~kLL~kl~~~G~KVLIFSq~~~~LDiLed~L~~~--f~g-------------------~~y~r 1118 (1404)
.+++.. +.++..+||.|+||+.....---....|... +.| ..+..
T Consensus 336 ----------~~~~~k----v~e~~~~g~qVlvFvhsR~~Ti~tA~~l~~~a~~~g~~~~f~~~~~~k~l~elf~~g~~i 401 (1230)
T KOG0952|consen 336 ----------EVCYDK----VVEFLQEGHQVLVFVHSRNETIRTAKKLRERAETNGEKDLFLPSPRNKQLKELFQQGMGI 401 (1230)
T ss_pred ----------HHHHHH----HHHHHHcCCeEEEEEecChHHHHHHHHHHHHHHhcCcccccCCChhhHHHHHHHHhhhhh
Confidence 011111 1223466888888887754222222222111 000 11234
Q ss_pred EeCCCCHHHHHHHHHHHhcCCCceEEEeecccccccccccCCCEEEEEcC-CCCHh----------HHHHHHHhhhccCC
Q 042857 1119 VDGSVSVGDRQAAITRFNQDKSRFVFLLSTRSCGLGINLATADTVIIYDS-DFNPH----------ADIQAMNRAHRIGQ 1187 (1404)
Q Consensus 1119 LdGs~s~~eRq~~Id~Fn~~~s~~VfLLSTrAgG~GINL~~AdtVIi~Ds-dWNP~----------~d~QAigRahRiGQ 1187 (1404)
-|.++.-.+|+-.-+.|..+.-. +|++|.....|+||+ |..|||-.. -|++. ..+|-+|||+|.+=
T Consensus 402 HhAGm~r~DR~l~E~~F~~G~i~--vL~cTaTLAwGVNLP-A~aViIKGT~~ydsskg~f~dlgilDVlQifGRAGRPqF 478 (1230)
T KOG0952|consen 402 HHAGMLRSDRQLVEKEFKEGHIK--VLCCTATLAWGVNLP-AYAVIIKGTQVYDSSKGSFVDLGILDVLQIFGRAGRPQF 478 (1230)
T ss_pred cccccchhhHHHHHHHHhcCCce--EEEecceeeeccCCc-ceEEEecCCcccccccCceeeehHHHHHHHHhccCCCCC
Confidence 56778888999999999876655 899999999999999 556666543 46655 47899999999775
Q ss_pred CCcEEEEEEeeCCCHHH
Q 042857 1188 SKRLLVYRLVVRASVEE 1204 (1404)
Q Consensus 1188 ~k~V~VYrLvt~~TvEE 1204 (1404)
...-..+-+.+.+.++-
T Consensus 479 d~~G~giIiTt~dkl~~ 495 (1230)
T KOG0952|consen 479 DSSGEGIIITTRDKLDH 495 (1230)
T ss_pred CCCceEEEEecccHHHH
Confidence 44444444555554443
No 125
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=99.20 E-value=2.7e-10 Score=124.20 Aligned_cols=155 Identities=22% Similarity=0.183 Sum_probs=108.9
Q ss_pred CCCHHHHHHHHHHHHhhccCCcEEEEcCCCchHHHHHHHHHHHHHhhc--cCCCcEEEEeCCC-ChHHHHHHHHHHCC--
Q 042857 755 ALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEF--KAKLPCLVLVPLS-TMPNWLAEFALWAP-- 829 (1404)
Q Consensus 755 ~L~pyQlegVnwL~~~~~~~~~~ILADEMGLGKTiqaIa~L~~L~~~~--~~~gP~LIVvP~S-ll~nW~rEf~kw~P-- 829 (1404)
.|++||.++++.+.. +.++++..++|.|||+.++..+...+... .....+|||+|.. ++.||...+..+..
T Consensus 21 ~~~~~Q~~~~~~~~~----~~~~li~~~TG~GKT~~~~~~~l~~~~~~~~~~~~~viii~p~~~L~~q~~~~~~~~~~~~ 96 (203)
T cd00268 21 KPTPIQARAIPPLLS----GRDVIGQAQTGSGKTAAFLIPILEKLDPSPKKDGPQALILAPTRELALQIAEVARKLGKHT 96 (203)
T ss_pred CCCHHHHHHHHHHhc----CCcEEEECCCCCcHHHHHHHHHHHHHHhhcccCCceEEEEcCCHHHHHHHHHHHHHHhccC
Confidence 589999999987765 88999999999999998665555444443 2345689999986 45889998888864
Q ss_pred CCcEEEEecchhHHHHHHHhhhccCCCCccccccCCCCceEEEeeHHHHHhhh--ccccCCCceEEEEccccccCCCc--
Q 042857 830 NLNVVEYHGCAKARAIIRQYEWHASDPDNLNKKTSSYKFNVLLTTYEMILADS--SHLRGVPWEVLVVDEGHRLKNSG-- 905 (1404)
Q Consensus 830 ~l~Vvvy~G~~~~R~~ir~~E~~~~~~~~~~~~~~~~kfdVvITTYe~l~~d~--~~L~~i~w~lVIVDEAHrlKN~~-- 905 (1404)
++++..++|+.........+. ...+|+|+|.+.+.... ..+.--.++++|+||+|.+.+..
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~---------------~~~~iiv~T~~~l~~~l~~~~~~~~~l~~lIvDE~h~~~~~~~~ 161 (203)
T cd00268 97 NLKVVVIYGGTSIDKQIRKLK---------------RGPHIVVATPGRLLDLLERGKLDLSKVKYLVLDEADRMLDMGFE 161 (203)
T ss_pred CceEEEEECCCCHHHHHHHhc---------------CCCCEEEEChHHHHHHHHcCCCChhhCCEEEEeChHHhhccChH
Confidence 677888888766544333221 25689999988775532 11222357899999999987543
Q ss_pred cHHHHHHhhcc-cccEEEEeccCC
Q 042857 906 SKLFSLLNSFS-FQHRVLLTGTPL 928 (1404)
Q Consensus 906 Sk~~~~L~~l~-~~~rLLLTGTPl 928 (1404)
..+...+..+. ....+++||||-
T Consensus 162 ~~~~~~~~~l~~~~~~~~~SAT~~ 185 (203)
T cd00268 162 DQIREILKLLPKDRQTLLFSATMP 185 (203)
T ss_pred HHHHHHHHhCCcccEEEEEeccCC
Confidence 22333444454 345688999985
No 126
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=99.18 E-value=2.2e-09 Score=133.96 Aligned_cols=413 Identities=15% Similarity=0.144 Sum_probs=216.4
Q ss_pred CCCCCCHHHHHHHHHHHHhhccCCcEEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEeCCCCh----HHHHHHHHHH
Q 042857 752 KGGALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLSTM----PNWLAEFALW 827 (1404)
Q Consensus 752 ~g~~L~pyQlegVnwL~~~~~~~~~~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP~Sll----~nW~rEf~kw 827 (1404)
.|...++-|+-|..-|. .|-|.-..+|-|||+++...++.... .+..+-||+|+..| .+|...+-.|
T Consensus 75 lg~r~ydvQlig~l~Ll------~G~VaEM~TGEGKTLvA~l~a~l~AL---~G~~VhvvT~NdyLA~RDae~m~~ly~~ 145 (764)
T PRK12326 75 LGLRPFDVQLLGALRLL------AGDVIEMATGEGKTLAGAIAAAGYAL---QGRRVHVITVNDYLARRDAEWMGPLYEA 145 (764)
T ss_pred cCCCcchHHHHHHHHHh------CCCcccccCCCCHHHHHHHHHHHHHH---cCCCeEEEcCCHHHHHHHHHHHHHHHHh
Confidence 35568889999987664 35677777899999998766554332 23468899999988 4677777777
Q ss_pred CCCCcEEEEecchhHHHHHHHhhhccCCCCccccccCCCCceEEEeeHHHHHhhhccccCCCceEEEEccccccCCCccH
Q 042857 828 APNLNVVEYHGCAKARAIIRQYEWHASDPDNLNKKTSSYKFNVLLTTYEMILADSSHLRGVPWEVLVVDEGHRLKNSGSK 907 (1404)
Q Consensus 828 ~P~l~Vvvy~G~~~~R~~ir~~E~~~~~~~~~~~~~~~~kfdVvITTYe~l~~d~~~L~~i~w~lVIVDEAHrlKN~~Sk 907 (1404)
+ ++.|....+..........|..... ........||.+--... ......-.-.+.++||||+..+-=.
T Consensus 146 L-GLsvg~i~~~~~~~err~aY~~DIt-----YgTn~e~gFDyLRDnm~---~~~~~~v~R~~~faIVDEvDSiLID--- 213 (764)
T PRK12326 146 L-GLTVGWITEESTPEERRAAYACDVT-----YASVNEIGFDVLRDQLV---TDVADLVSPNPDVAIIDEADSVLVD--- 213 (764)
T ss_pred c-CCEEEEECCCCCHHHHHHHHcCCCE-----EcCCcccccccchhhhc---cChHhhcCCccceeeecchhhheec---
Confidence 6 7888887775444332222221000 00111233333322111 1112223345789999999876322
Q ss_pred HHHHHhhcccccEEEEeccCCC-CChHHHHHHhhhhCCCC-CC-C-----------hhHHHHHhc---cccchHH----H
Q 042857 908 LFSLLNSFSFQHRVLLTGTPLQ-NNIGEMYNLLNFLQPAS-FP-S-----------LSSFEEKFN---DLTTTQK----V 966 (1404)
Q Consensus 908 ~~~~L~~l~~~~rLLLTGTPlq-Nnl~EL~sLL~fL~P~~-f~-s-----------~~~F~~~f~---d~~~~~~----i 966 (1404)
.++..|++||.+-. +.+..++.+..-|.++. |. + -..+.+.+- ++...+. +
T Consensus 214 --------eArtPLiISg~~~~~~~y~~~~~~v~~L~~~~dy~ide~~k~v~LTe~G~~~~e~~l~~~~ly~~~~~~~~~ 285 (764)
T PRK12326 214 --------EALVPLVLAGSTPGEAPRGEIAELVRRLREGKDYEIDDDGRNVHLTDKGARKVEKALGGIDLYSEEHVGTTL 285 (764)
T ss_pred --------cccCceeeeCCCcchhHHHHHHHHHHhcCcCCcEEEEcCCCeeEecHHHHHHHHHHcCCccccCcchhHHHH
Confidence 24556888875532 23333334444443331 10 0 001111111 1111111 1
Q ss_pred HHHHHhhhh-hhhhhhHhhhhhcCCCceEEEEEecCCHHHH--HHHHHHHHHHHHHHHhh-----ccchhhHHH------
Q 042857 967 EELKKLVAP-HMLRRLKKDAMQNIPPKTERMVPVELSSIQA--EYYRAMLTKNYQILRNI-----GKGVAQQSM------ 1032 (1404)
Q Consensus 967 ~~L~~lL~p-~mLRR~K~dV~~~LPpk~e~iV~V~LS~~Qk--~~Y~~il~~n~~~L~~~-----~kg~~~~sl------ 1032 (1404)
..+...|+. +++.|-+.-+.. .....+| -+.|.--. .-|..=+....++-... ....+..++
T Consensus 286 ~~i~~AL~A~~l~~~d~dYiV~---dgeV~iV-De~TGRvm~grrwsdGLHQaIEaKE~v~i~~e~~t~AsIT~QnfFr~ 361 (764)
T PRK12326 286 TQVNVALHAHALLQRDVHYIVR---DGKVHLI-NASRGRIAQLQRWPDGLQAAVEAKEGLETTETGEVLDTITVQALIGR 361 (764)
T ss_pred HHHHHHHHHHHHHhcCCcEEEE---CCEEEEE-ECCCCCcCCCCccChHHHHHHHHHcCCCCCCCceeeehhhHHHHHHh
Confidence 122222221 222222221211 1111111 11111000 01111111111110000 000000111
Q ss_pred -----------HHHHHHHHHHhCCCCCC-CCCCCCCCcHHHHHHHHHhhhhHHHHHHHHHHHHHHcCCeEEEEecchhHH
Q 042857 1033 -----------LNIVMQLRKVCNHPYLI-PGTEPDSGSVEFLHEMRIKASAKLTLLHSMLKVLYKEGHRVLIFSQMTKLL 1100 (1404)
Q Consensus 1033 -----------lnilm~LRK~cnHP~L~-~~~e~~~~~~e~l~~~~i~~SgKl~~L~kLL~kl~~~G~KVLIFSq~~~~L 1100 (1404)
.....+|+++.+-+.+. |...|.. -.+...........|+.++.+-+.++.+.|..|||.+..+..-
T Consensus 362 Y~kLsGMTGTa~t~~~Ef~~iY~l~Vv~IPtnkp~~-R~d~~d~iy~t~~~k~~Aii~ei~~~~~~GrPVLVgt~sI~~S 440 (764)
T PRK12326 362 YPTVCGMTGTAVAAGEQLRQFYDLGVSVIPPNKPNI-REDEADRVYATAAEKNDAIVEHIAEVHETGQPVLVGTHDVAES 440 (764)
T ss_pred cchheeecCCChhHHHHHHHHhCCcEEECCCCCCce-eecCCCceEeCHHHHHHHHHHHHHHHHHcCCCEEEEeCCHHHH
Confidence 11223455555544332 1111110 0000001112346799999999999999999999999999999
Q ss_pred HHHHHHHhhhcCCceEEEEeCCCCHHHHHHHHHHHhcCCCceEEEeecccccccccccCC---------------CEEEE
Q 042857 1101 DILEDYLNIEFGPKTYERVDGSVSVGDRQAAITRFNQDKSRFVFLLSTRSCGLGINLATA---------------DTVII 1165 (1404)
Q Consensus 1101 DiLed~L~~~f~g~~y~rLdGs~s~~eRq~~Id~Fn~~~s~~VfLLSTrAgG~GINL~~A---------------dtVIi 1165 (1404)
+.|..+|... ++++..|+.... ++-.++|.+= +....+-|+|..+|+|.++.-. =+||.
T Consensus 441 E~ls~~L~~~--gI~h~vLNAk~~-~~EA~IIa~A---G~~gaVTIATNMAGRGTDIkLg~~~~~~~~~V~~~GGLhVIg 514 (764)
T PRK12326 441 EELAERLRAA--GVPAVVLNAKND-AEEARIIAEA---GKYGAVTVSTQMAGRGTDIRLGGSDEADRDRVAELGGLHVIG 514 (764)
T ss_pred HHHHHHHHhC--CCcceeeccCch-HhHHHHHHhc---CCCCcEEEEecCCCCccCeecCCCcccchHHHHHcCCcEEEe
Confidence 9999999987 788888987643 2223344432 3334578999999999887532 27898
Q ss_pred EcCCCCHhHHHHHHHhhhccCCCCcEEEEEEeeCCCHHHHHHHH
Q 042857 1166 YDSDFNPHADIQAMNRAHRIGQSKRLLVYRLVVRASVEERILQL 1209 (1404)
Q Consensus 1166 ~DsdWNP~~d~QAigRahRiGQ~k~V~VYrLvt~~TvEE~Ilq~ 1209 (1404)
-..+-|-..+.|..||++|.|+......|- |+|..++.+
T Consensus 515 TerheSrRID~QLrGRaGRQGDpGss~f~l-----SleDdl~~~ 553 (764)
T PRK12326 515 TGRHRSERLDNQLRGRAGRQGDPGSSVFFV-----SLEDDVVAA 553 (764)
T ss_pred ccCCchHHHHHHHhcccccCCCCCceeEEE-----EcchhHHHh
Confidence 889999999999999999999977755442 345555543
No 127
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.17 E-value=2.3e-10 Score=120.44 Aligned_cols=156 Identities=25% Similarity=0.283 Sum_probs=110.3
Q ss_pred CHHHHHHHHHHHHhhccCCcEEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEeCCC-ChHHHHHHHHHHCC--CCcE
Q 042857 757 FPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLS-TMPNWLAEFALWAP--NLNV 833 (1404)
Q Consensus 757 ~pyQlegVnwL~~~~~~~~~~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP~S-ll~nW~rEf~kw~P--~l~V 833 (1404)
.|+|.+++.-+.. +.+.++...+|.|||..++..+...+... ....+||++|.. ++.+-.+++..++. ++++
T Consensus 1 t~~Q~~~~~~i~~----~~~~li~aptGsGKT~~~~~~~l~~~~~~-~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~ 75 (169)
T PF00270_consen 1 TPLQQEAIEAIIS----GKNVLISAPTGSGKTLAYILPALNRLQEG-KDARVLIIVPTRALAEQQFERLRKFFSNTNVRV 75 (169)
T ss_dssp -HHHHHHHHHHHT----TSEEEEECSTTSSHHHHHHHHHHHHHHTT-SSSEEEEEESSHHHHHHHHHHHHHHTTTTTSSE
T ss_pred CHHHHHHHHHHHc----CCCEEEECCCCCccHHHHHHHHHhhhccC-CCceEEEEeeccccccccccccccccccccccc
Confidence 3899999987763 78899999999999999987777665554 445899999986 55788889998875 4788
Q ss_pred EEEecchhHH-HHHHHhhhccCCCCccccccCCCCceEEEeeHHHHHhhhcc--ccCCCceEEEEccccccCCC--ccHH
Q 042857 834 VEYHGCAKAR-AIIRQYEWHASDPDNLNKKTSSYKFNVLLTTYEMILADSSH--LRGVPWEVLVVDEGHRLKNS--GSKL 908 (1404)
Q Consensus 834 vvy~G~~~~R-~~ir~~E~~~~~~~~~~~~~~~~kfdVvITTYe~l~~d~~~--L~~i~w~lVIVDEAHrlKN~--~Sk~ 908 (1404)
..++|..... ...... ....+|+|+|++.+...... +.-...++||+||+|.+-.. ....
T Consensus 76 ~~~~~~~~~~~~~~~~~---------------~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~iViDE~h~l~~~~~~~~~ 140 (169)
T PF00270_consen 76 VLLHGGQSISEDQREVL---------------SNQADILVTTPEQLLDLISNGKINISRLSLIVIDEAHHLSDETFRAML 140 (169)
T ss_dssp EEESTTSCHHHHHHHHH---------------HTTSSEEEEEHHHHHHHHHTTSSTGTTESEEEEETHHHHHHTTHHHHH
T ss_pred ccccccccccccccccc---------------cccccccccCcchhhccccccccccccceeeccCcccccccccHHHHH
Confidence 8888865432 211111 12578999999999875443 12234789999999999653 2233
Q ss_pred HHHHhhc---ccccEEEEeccCCCCChH
Q 042857 909 FSLLNSF---SFQHRVLLTGTPLQNNIG 933 (1404)
Q Consensus 909 ~~~L~~l---~~~~rLLLTGTPlqNnl~ 933 (1404)
...+..+ .....++|||||- .++.
T Consensus 141 ~~i~~~~~~~~~~~~i~~SAT~~-~~~~ 167 (169)
T PF00270_consen 141 KSILRRLKRFKNIQIILLSATLP-SNVE 167 (169)
T ss_dssp HHHHHHSHTTTTSEEEEEESSST-HHHH
T ss_pred HHHHHHhcCCCCCcEEEEeeCCC-hhHh
Confidence 3444444 2356789999995 4433
No 128
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.17 E-value=9.1e-11 Score=135.45 Aligned_cols=316 Identities=19% Similarity=0.252 Sum_probs=209.3
Q ss_pred CCCHHHHHHHHHHHHhhccCCcEEEEcCCCchHHHHHHHHHHHHHhhc-cCCCcEEEEeCCCChH-H---HHHHHHHHCC
Q 042857 755 ALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEF-KAKLPCLVLVPLSTMP-N---WLAEFALWAP 829 (1404)
Q Consensus 755 ~L~pyQlegVnwL~~~~~~~~~~ILADEMGLGKTiqaIa~L~~L~~~~-~~~gP~LIVvP~Sll~-n---W~rEf~kw~P 829 (1404)
+..|.|...++-++. +....-..-+|.|||...+.-+..-+... ...-+.||+.|..-|. | ...++.+++
T Consensus 43 ~ptpiqRKTipliLe----~~dvv~martgsgktaaf~ipm~e~Lk~~s~~g~RalilsptreLa~qtlkvvkdlgrgt- 117 (529)
T KOG0337|consen 43 TPTPIQRKTIPLILE----GRDVVGMARTGSGKTAAFLIPMIEKLKSHSQTGLRALILSPTRELALQTLKVVKDLGRGT- 117 (529)
T ss_pred CCCchhcccccceee----ccccceeeecCCcchhhHHHHHHHHHhhccccccceeeccCcHHHHHHHHHHHHHhcccc-
Confidence 456777777766655 56666666799999987665554433332 2334789999997663 3 344444544
Q ss_pred CCcEE-EEecchhHHHHHHHhhhccCCCCccccccCCCCceEEEeeHHHHHhhhc--cccCCCceEEEEccccccCC--C
Q 042857 830 NLNVV-EYHGCAKARAIIRQYEWHASDPDNLNKKTSSYKFNVLLTTYEMILADSS--HLRGVPWEVLVVDEGHRLKN--S 904 (1404)
Q Consensus 830 ~l~Vv-vy~G~~~~R~~ir~~E~~~~~~~~~~~~~~~~kfdVvITTYe~l~~d~~--~L~~i~w~lVIVDEAHrlKN--~ 904 (1404)
+++.. .|+|+....+.+.-. ...|||+.|+..+.--.. .|.--...|||+||+.+|-. +
T Consensus 118 ~lr~s~~~ggD~~eeqf~~l~----------------~npDii~ATpgr~~h~~vem~l~l~sveyVVfdEadrlfemgf 181 (529)
T KOG0337|consen 118 KLRQSLLVGGDSIEEQFILLN----------------ENPDIIIATPGRLLHLGVEMTLTLSSVEYVVFDEADRLFEMGF 181 (529)
T ss_pred chhhhhhcccchHHHHHHHhc----------------cCCCEEEecCceeeeeehheeccccceeeeeehhhhHHHhhhh
Confidence 56655 556665554433221 256899999877653211 12333456999999999854 4
Q ss_pred ccHHHHHHhhcccc-cEEEEeccCCCCChHHHHHHhhhhCCCCCCChhHHHHHhccccchHHHHHHHHhhhhhhhhhhHh
Q 042857 905 GSKLFSLLNSFSFQ-HRVLLTGTPLQNNIGEMYNLLNFLQPASFPSLSSFEEKFNDLTTTQKVEELKKLVAPHMLRRLKK 983 (1404)
Q Consensus 905 ~Sk~~~~L~~l~~~-~rLLLTGTPlqNnl~EL~sLL~fL~P~~f~s~~~F~~~f~d~~~~~~i~~L~~lL~p~mLRR~K~ 983 (1404)
.-++.+.+.++... -.+++|||- .+.+.+ |...+ +..|..+|
T Consensus 182 qeql~e~l~rl~~~~QTllfSatl-p~~lv~------fakaG--------------------------l~~p~lVR---- 224 (529)
T KOG0337|consen 182 QEQLHEILSRLPESRQTLLFSATL-PRDLVD------FAKAG--------------------------LVPPVLVR---- 224 (529)
T ss_pred HHHHHHHHHhCCCcceEEEEeccC-chhhHH------HHHcc--------------------------CCCCceEE----
Confidence 56788888888744 568899994 121111 11000 01111111
Q ss_pred hhhhcCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCcHHHHH
Q 042857 984 DAMQNIPPKTERMVPVELSSIQAEYYRAMLTKNYQILRNIGKGVAQQSMLNIVMQLRKVCNHPYLIPGTEPDSGSVEFLH 1063 (1404)
Q Consensus 984 dV~~~LPpk~e~iV~V~LS~~Qk~~Y~~il~~n~~~L~~~~kg~~~~sllnilm~LRK~cnHP~L~~~~e~~~~~~e~l~ 1063 (1404)
..|.-.+++. .+++.+
T Consensus 225 -----------ldvetkise~--------------------------------lk~~f~--------------------- 240 (529)
T KOG0337|consen 225 -----------LDVETKISEL--------------------------------LKVRFF--------------------- 240 (529)
T ss_pred -----------eehhhhcchh--------------------------------hhhhee---------------------
Confidence 0000011110 001110
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHcCCeEEEEecchhHHHHHHHHHhhhcCCceEEEEeCCCCHHHHHHHHHHHhcCCCceE
Q 042857 1064 EMRIKASAKLTLLHSMLKVLYKEGHRVLIFSQMTKLLDILEDYLNIEFGPKTYERVDGSVSVGDRQAAITRFNQDKSRFV 1143 (1404)
Q Consensus 1064 ~~~i~~SgKl~~L~kLL~kl~~~G~KVLIFSq~~~~LDiLed~L~~~f~g~~y~rLdGs~s~~eRq~~Id~Fn~~~s~~V 1143 (1404)
.+....|..+|..++..... ..+.+||+......+++...|... |+....+.|++.+..|..-+..|+.....
T Consensus 241 --~~~~a~K~aaLl~il~~~~~-~~~t~vf~~tk~hve~~~~ll~~~--g~~~s~iysslD~~aRk~~~~~F~~~k~~-- 313 (529)
T KOG0337|consen 241 --RVRKAEKEAALLSILGGRIK-DKQTIVFVATKHHVEYVRGLLRDF--GGEGSDIYSSLDQEARKINGRDFRGRKTS-- 313 (529)
T ss_pred --eeccHHHHHHHHHHHhcccc-ccceeEEecccchHHHHHHHHHhc--CCCccccccccChHhhhhccccccCCccc--
Confidence 12334566677776665443 458999999999999999999876 67777899999999999999999866555
Q ss_pred EEeecccccccccccCCCEEEEEcCCCCHhHHHHHHHhhhccCCCCcEEEEEEeeCCC
Q 042857 1144 FLLSTRSCGLGINLATADTVIIYDSDFNPHADIQAMNRAHRIGQSKRLLVYRLVVRAS 1201 (1404)
Q Consensus 1144 fLLSTrAgG~GINL~~AdtVIi~DsdWNP~~d~QAigRahRiGQ~k~V~VYrLvt~~T 1201 (1404)
+|++|+.+.+|++++--|.||.||.+-.+..+++|.||+.|-|.+. ..|-||+..-
T Consensus 314 ~lvvTdvaaRG~diplldnvinyd~p~~~klFvhRVgr~aragrtg--~aYs~V~~~~ 369 (529)
T KOG0337|consen 314 ILVVTDVAARGLDIPLLDNVINYDFPPDDKLFVHRVGRVARAGRTG--RAYSLVASTD 369 (529)
T ss_pred eEEEehhhhccCCCccccccccccCCCCCceEEEEecchhhccccc--eEEEEEeccc
Confidence 8999999999999999999999999999999999999999999643 4677777653
No 129
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=99.11 E-value=2.4e-09 Score=121.48 Aligned_cols=312 Identities=18% Similarity=0.195 Sum_probs=202.8
Q ss_pred CCCHHHHHHHHHHHHhhccCCcEEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEeCC-CChHHHHHHHHHHCCCCcE
Q 042857 755 ALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPL-STMPNWLAEFALWAPNLNV 833 (1404)
Q Consensus 755 ~L~pyQlegVnwL~~~~~~~~~~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP~-Sll~nW~rEf~kw~P~l~V 833 (1404)
++||.|++++|-.+. +..++|...+|-||++..-... | -..|-.|||||+ |++..-.-.++...-+...
T Consensus 94 kfrplq~~ain~~ma----~ed~~lil~tgggkslcyqlpa--l----~adg~alvi~plislmedqil~lkqlgi~as~ 163 (695)
T KOG0353|consen 94 KFRPLQLAAINATMA----GEDAFLILPTGGGKSLCYQLPA--L----CADGFALVICPLISLMEDQILQLKQLGIDASM 163 (695)
T ss_pred hcChhHHHHhhhhhc----cCceEEEEeCCCccchhhhhhH--H----hcCCceEeechhHHHHHHHHHHHHHhCcchhh
Confidence 589999999998766 8889999999999987532211 1 234668999997 5555555666666544333
Q ss_pred EEEecchhHHHHHHHhhhccCCCCccccccCCCCceEEEeeHHHHHhhhc-------cccCCCceEEEEccccccCCCc-
Q 042857 834 VEYHGCAKARAIIRQYEWHASDPDNLNKKTSSYKFNVLLTTYEMILADSS-------HLRGVPWEVLVVDEGHRLKNSG- 905 (1404)
Q Consensus 834 vvy~G~~~~R~~ir~~E~~~~~~~~~~~~~~~~kfdVvITTYe~l~~d~~-------~L~~i~w~lVIVDEAHrlKN~~- 905 (1404)
+-...++..-..... ++ ......|.++..|++.+.+... .+....|.++.|||.|..-.++
T Consensus 164 lnansske~~k~v~~-~i----------~nkdse~kliyvtpekiaksk~~mnkleka~~~~~~~~iaidevhccsqwgh 232 (695)
T KOG0353|consen 164 LNANSSKEEAKRVEA-AI----------TNKDSEFKLIYVTPEKIAKSKKFMNKLEKALEAGFFKLIAIDEVHCCSQWGH 232 (695)
T ss_pred ccCcccHHHHHHHHH-HH----------cCCCceeEEEEecHHHHHHHHHHHHHHHHHhhcceeEEEeecceeehhhhCc
Confidence 333333332222211 11 1234578999999998876533 3444568899999998864322
Q ss_pred ------cHHHHHHhhcccccEEEEeccCCCCChHHHHHHhhhhCCCCCCChhHHHHHhccccchHHHHHHHHhhhhhhhh
Q 042857 906 ------SKLFSLLNSFSFQHRVLLTGTPLQNNIGEMYNLLNFLQPASFPSLSSFEEKFNDLTTTQKVEELKKLVAPHMLR 979 (1404)
Q Consensus 906 ------Sk~~~~L~~l~~~~rLLLTGTPlqNnl~EL~sLL~fL~P~~f~s~~~F~~~f~d~~~~~~i~~L~~lL~p~mLR 979 (1404)
+.+...-++|+....++||+|...+-+.+...+|..-.. -.|..-|
T Consensus 233 dfr~dy~~l~ilkrqf~~~~iigltatatn~vl~d~k~il~ie~~------~tf~a~f---------------------- 284 (695)
T KOG0353|consen 233 DFRPDYKALGILKRQFKGAPIIGLTATATNHVLDDAKDILCIEAA------FTFRAGF---------------------- 284 (695)
T ss_pred ccCcchHHHHHHHHhCCCCceeeeehhhhcchhhHHHHHHhHHhh------heeeccc----------------------
Confidence 333444456777778999999877766655544432110 0011111
Q ss_pred hhHhhhhhcCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCcH
Q 042857 980 RLKKDAMQNIPPKTERMVPVELSSIQAEYYRAMLTKNYQILRNIGKGVAQQSMLNIVMQLRKVCNHPYLIPGTEPDSGSV 1059 (1404)
Q Consensus 980 R~K~dV~~~LPpk~e~iV~V~LS~~Qk~~Y~~il~~n~~~L~~~~kg~~~~sllnilm~LRK~cnHP~L~~~~e~~~~~~ 1059 (1404)
|.|-|.-......+..
T Consensus 285 ----------------------------------------------------------------nr~nl~yev~qkp~n~ 300 (695)
T KOG0353|consen 285 ----------------------------------------------------------------NRPNLKYEVRQKPGNE 300 (695)
T ss_pred ----------------------------------------------------------------CCCCceeEeeeCCCCh
Confidence 1111111110001111
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHH--cCCeEEEEecchhHHHHHHHHHhhhcCCceEEEEeCCCCHHHHHHHHHHHhc
Q 042857 1060 EFLHEMRIKASAKLTLLHSMLKVLYK--EGHRVLIFSQMTKLLDILEDYLNIEFGPKTYERVDGSVSVGDRQAAITRFNQ 1137 (1404)
Q Consensus 1060 e~l~~~~i~~SgKl~~L~kLL~kl~~--~G~KVLIFSq~~~~LDiLed~L~~~f~g~~y~rLdGs~s~~eRq~~Id~Fn~ 1137 (1404)
+ ..+.++.+.+.. .|.--||||-...-.+-+...|... |+....+|..+.+.+|..+-+.+-+
T Consensus 301 d-------------d~~edi~k~i~~~f~gqsgiiyc~sq~d~ekva~alkn~--gi~a~~yha~lep~dks~~hq~w~a 365 (695)
T KOG0353|consen 301 D-------------DCIEDIAKLIKGDFAGQSGIIYCFSQKDCEKVAKALKNH--GIHAGAYHANLEPEDKSGAHQGWIA 365 (695)
T ss_pred H-------------HHHHHHHHHhccccCCCcceEEEeccccHHHHHHHHHhc--CccccccccccCccccccccccccc
Confidence 1 111111111111 3667789998888899999999876 7888888999988888887777765
Q ss_pred CCCceEEEeecccccccccccCCCEEEEEcCCCCHhHHHH----------------------------------------
Q 042857 1138 DKSRFVFLLSTRSCGLGINLATADTVIIYDSDFNPHADIQ---------------------------------------- 1177 (1404)
Q Consensus 1138 ~~s~~VfLLSTrAgG~GINL~~AdtVIi~DsdWNP~~d~Q---------------------------------------- 1177 (1404)
+... +++.|-|.|.||+-+....||+-..+-+-.+|-|
T Consensus 366 ~eiq--vivatvafgmgidkpdvrfvihhsl~ksienyyqasarillrmtkqknksdtggstqinilevctnfkiffavf 443 (695)
T KOG0353|consen 366 GEIQ--VIVATVAFGMGIDKPDVRFVIHHSLPKSIENYYQASARILLRMTKQKNKSDTGGSTQINILEVCTNFKIFFAVF 443 (695)
T ss_pred cceE--EEEEEeeecccCCCCCeeEEEecccchhHHHHHHHHHHHHHHHhhhcccccCCCcceeehhhhhccceeeeeee
Confidence 5544 6788999999999999999999999999999999
Q ss_pred ---HHHhhhccCCCCcEEEEEE
Q 042857 1178 ---AMNRAHRIGQSKRLLVYRL 1196 (1404)
Q Consensus 1178 ---AigRahRiGQ~k~V~VYrL 1196 (1404)
--||++|-|++-.+..|+=
T Consensus 444 sekesgragrd~~~a~cilyy~ 465 (695)
T KOG0353|consen 444 SEKESGRAGRDDMKADCILYYG 465 (695)
T ss_pred cchhccccccCCCcccEEEEec
Confidence 4688999999888776663
No 130
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=99.06 E-value=6.8e-09 Score=132.33 Aligned_cols=121 Identities=18% Similarity=0.187 Sum_probs=95.6
Q ss_pred hhhhHHHHHHHHHHHHHHcCCeEEEEecchhHHHHHHHHHhhhcCCceEEEEeCCCCHHHHHHHHHHHhcCCCceEEEee
Q 042857 1068 KASAKLTLLHSMLKVLYKEGHRVLIFSQMTKLLDILEDYLNIEFGPKTYERVDGSVSVGDRQAAITRFNQDKSRFVFLLS 1147 (1404)
Q Consensus 1068 ~~SgKl~~L~kLL~kl~~~G~KVLIFSq~~~~LDiLed~L~~~f~g~~y~rLdGs~s~~eRq~~Id~Fn~~~s~~VfLLS 1147 (1404)
....|+.++.+-+..+.+.|..|||-+..+..-+.|..+|... ++++..|+.... ++++.|-. ++ +..-.+-|+
T Consensus 430 t~~eK~~Ai~~ei~~~~~~GrPVLVGT~SVe~SE~ls~~L~~~--gi~h~VLNAk~~--~~EA~IIa-~A-G~~GaVTIA 503 (913)
T PRK13103 430 TAEEKYAAIITDIKECMALGRPVLVGTATIETSEHMSNLLKKE--GIEHKVLNAKYH--EKEAEIIA-QA-GRPGALTIA 503 (913)
T ss_pred CHHHHHHHHHHHHHHHHhCCCCEEEEeCCHHHHHHHHHHHHHc--CCcHHHhccccc--hhHHHHHH-cC-CCCCcEEEe
Confidence 3468999999999999999999999999999999999999987 777777776533 33333332 22 323347889
Q ss_pred ccccccccccc-------------------------------------CCCEEEEEcCCCCHhHHHHHHHhhhccCCCCc
Q 042857 1148 TRSCGLGINLA-------------------------------------TADTVIIYDSDFNPHADIQAMNRAHRIGQSKR 1190 (1404)
Q Consensus 1148 TrAgG~GINL~-------------------------------------~AdtVIi~DsdWNP~~d~QAigRahRiGQ~k~ 1190 (1404)
|..+|+|.|+. +-=+||.-..+-|-..|.|..||++|.|....
T Consensus 504 TNMAGRGTDIkLg~n~~~~~~~~~~~~~~~~~~~~~~~~~~~e~V~e~GGLhVIgTerheSrRID~QLrGRaGRQGDPGs 583 (913)
T PRK13103 504 TNMAGRGTDILLGGNWEVEVAALENPTPEQIAQIKADWQKRHQQVIEAGGLHVIASERHESRRIDNQLRGRAGRQGDPGS 583 (913)
T ss_pred ccCCCCCCCEecCCchHHHHHhhhhhhHHHHHHHHHHHHhHHHHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCc
Confidence 99999998874 12378888899999999999999999999776
Q ss_pred EEEE
Q 042857 1191 LLVY 1194 (1404)
Q Consensus 1191 V~VY 1194 (1404)
...|
T Consensus 584 S~f~ 587 (913)
T PRK13103 584 SRFY 587 (913)
T ss_pred eEEE
Confidence 5443
No 131
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=99.04 E-value=4.9e-09 Score=137.95 Aligned_cols=86 Identities=15% Similarity=0.159 Sum_probs=65.1
Q ss_pred CCCCCCHHHHHHHHHHHHhhccCCcEEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEeCCCCh-HHHHH-HHH---H
Q 042857 752 KGGALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLSTM-PNWLA-EFA---L 826 (1404)
Q Consensus 752 ~g~~L~pyQlegVnwL~~~~~~~~~~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP~Sll-~nW~r-Ef~---k 826 (1404)
.|.+.||+|.+.+..+...+..+..+++-..+|+|||+..+..+..... ...+++|.+|+..| .||.. ++. +
T Consensus 242 ~~~~~r~~Q~~~~~~i~~~~~~~~~~~~eA~TG~GKT~ayLlp~~~~~~---~~~~vvi~t~t~~Lq~Ql~~~~~~~l~~ 318 (850)
T TIGR01407 242 LGLEYRPEQLKLAELVLDQLTHSEKSLIEAPTGTGKTLGYLLPALYYAI---TEKPVVISTNTKVLQSQLLEKDIPLLNE 318 (850)
T ss_pred cCCccCHHHHHHHHHHHHHhccCCcEEEECCCCCchhHHHHHHHHHHhc---CCCeEEEEeCcHHHHHHHHHHHHHHHHH
Confidence 3457999999999988888888888999999999999998877655433 34589999998765 67744 444 3
Q ss_pred HCC-CCcEEEEecch
Q 042857 827 WAP-NLNVVEYHGCA 840 (1404)
Q Consensus 827 w~P-~l~Vvvy~G~~ 840 (1404)
.++ ++++++..|..
T Consensus 319 ~~~~~~~~~~~kG~~ 333 (850)
T TIGR01407 319 ILNFKINAALIKGKS 333 (850)
T ss_pred HcCCCceEEEEEcch
Confidence 333 47777777654
No 132
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.04 E-value=1.7e-08 Score=116.72 Aligned_cols=318 Identities=18% Similarity=0.164 Sum_probs=194.8
Q ss_pred CHHHHHHHHHHHHhhccCCcEEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEeCCCCh-HHHHHHHHHHCCCCcEEE
Q 042857 757 FPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLSTM-PNWLAEFALWAPNLNVVE 835 (1404)
Q Consensus 757 ~pyQlegVnwL~~~~~~~~~~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP~Sll-~nW~rEf~kw~P~l~Vvv 835 (1404)
.|.|..+++-++. .+..+.+...+|.||++..-.- .|+. .+-++||.|+-.| ..-.+-+.+ ++|-+
T Consensus 22 s~LQE~A~~c~VK---~k~DVyVsMPTGaGKSLCyQLP--aL~~----~gITIV~SPLiALIkDQiDHL~~----LKVp~ 88 (641)
T KOG0352|consen 22 SRLQEQAINCIVK---RKCDVYVSMPTGAGKSLCYQLP--ALVH----GGITIVISPLIALIKDQIDHLKR----LKVPC 88 (641)
T ss_pred ChHHHHHHHHHHh---ccCcEEEeccCCCchhhhhhch--HHHh----CCeEEEehHHHHHHHHHHHHHHh----cCCch
Confidence 3678899887765 5788999999999999753221 1111 2346788886544 333333333 22221
Q ss_pred Eec----chhHH-HHHHHhhhccCCCCccccccCCCCceEEEeeHHHHHhh-----hccc-cCCCceEEEEccccccCCC
Q 042857 836 YHG----CAKAR-AIIRQYEWHASDPDNLNKKTSSYKFNVLLTTYEMILAD-----SSHL-RGVPWEVLVVDEGHRLKNS 904 (1404)
Q Consensus 836 y~G----~~~~R-~~ir~~E~~~~~~~~~~~~~~~~kfdVvITTYe~l~~d-----~~~L-~~i~w~lVIVDEAHrlKN~ 904 (1404)
-.- +..+| .++-+++ .......++-+|+++...+ .+.| ......++||||||..-.+
T Consensus 89 ~SLNSKlSt~ER~ri~~DL~------------~ekp~~K~LYITPE~AAt~~FQ~lLn~L~~r~~L~Y~vVDEAHCVSQW 156 (641)
T KOG0352|consen 89 ESLNSKLSTVERSRIMGDLA------------KEKPTIKMLYITPEGAATDGFQKLLNGLANRDVLRYIVVDEAHCVSQW 156 (641)
T ss_pred hHhcchhhHHHHHHHHHHHH------------hcCCceeEEEEchhhhhhhhHHHHHHHHhhhceeeeEEechhhhHhhh
Confidence 111 12222 2333332 1123456788888876543 2222 2334689999999987543
Q ss_pred cc------HHHHHHhh-cccccEEEEeccCCCCChHHHHHHhhhhCCCCCCChhHHHH-HhccccchHHHHHHHHhhhhh
Q 042857 905 GS------KLFSLLNS-FSFQHRVLLTGTPLQNNIGEMYNLLNFLQPASFPSLSSFEE-KFNDLTTTQKVEELKKLVAPH 976 (1404)
Q Consensus 905 ~S------k~~~~L~~-l~~~~rLLLTGTPlqNnl~EL~sLL~fL~P~~f~s~~~F~~-~f~d~~~~~~i~~L~~lL~p~ 976 (1404)
+. ...-.|++ +..-..+.||||.-..--+|+|..|++-.|-..-..-.|.. .|.+
T Consensus 157 GHDFRPDYL~LG~LRS~~~~vpwvALTATA~~~VqEDi~~qL~L~~PVAiFkTP~FR~NLFYD----------------- 219 (641)
T KOG0352|consen 157 GHDFRPDYLTLGSLRSVCPGVPWVALTATANAKVQEDIAFQLKLRNPVAIFKTPTFRDNLFYD----------------- 219 (641)
T ss_pred ccccCcchhhhhhHHhhCCCCceEEeecccChhHHHHHHHHHhhcCcHHhccCcchhhhhhHH-----------------
Confidence 32 11222222 23334578999987777788888887776632111111111 0000
Q ss_pred hhhhhHhhhhhcCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHhCCCCCCCCCCCCC
Q 042857 977 MLRRLKKDAMQNIPPKTERMVPVELSSIQAEYYRAMLTKNYQILRNIGKGVAQQSMLNIVMQLRKVCNHPYLIPGTEPDS 1056 (1404)
Q Consensus 977 mLRR~K~dV~~~LPpk~e~iV~V~LS~~Qk~~Y~~il~~n~~~L~~~~kg~~~~sllnilm~LRK~cnHP~L~~~~e~~~ 1056 (1404)
-.|+.+++.-+..|.. --++++..|--+.....
T Consensus 220 ------------------------------~~~K~~I~D~~~~LaD---------------F~~~~LG~~~~~~~~~K-- 252 (641)
T KOG0352|consen 220 ------------------------------NHMKSFITDCLTVLAD---------------FSSSNLGKHEKASQNKK-- 252 (641)
T ss_pred ------------------------------HHHHHHhhhHhHhHHH---------------HHHHhcCChhhhhcCCC--
Confidence 0122222222211111 01111111111100000
Q ss_pred CcHHHHHHHHHhhhhHHHHHHHHHHHHHHcCCeEEEEecchhHHHHHHHHHhhhcCCceEEEEeCCCCHHHHHHHHHHHh
Q 042857 1057 GSVEFLHEMRIKASAKLTLLHSMLKVLYKEGHRVLIFSQMTKLLDILEDYLNIEFGPKTYERVDGSVSVGDRQAAITRFN 1136 (1404)
Q Consensus 1057 ~~~e~l~~~~i~~SgKl~~L~kLL~kl~~~G~KVLIFSq~~~~LDiLed~L~~~f~g~~y~rLdGs~s~~eRq~~Id~Fn 1136 (1404)
....--||||......+.+.-.|... |+...-+|.+....+|..+.+.+.
T Consensus 253 ----------------------------~~~GCGIVYCRTR~~cEq~AI~l~~~--Gi~A~AYHAGLK~~ERTeVQe~WM 302 (641)
T KOG0352|consen 253 ----------------------------TFTGCGIVYCRTRNECEQVAIMLEIA--GIPAMAYHAGLKKKERTEVQEKWM 302 (641)
T ss_pred ----------------------------CcCcceEEEeccHHHHHHHHHHhhhc--CcchHHHhcccccchhHHHHHHHh
Confidence 00124589999999999999999876 788888999999999999999998
Q ss_pred cCCCceEEEeecccccccccccCCCEEEEEcCCCCHhHHHHHHHhhhccCCCCcEEEEE
Q 042857 1137 QDKSRFVFLLSTRSCGLGINLATADTVIIYDSDFNPHADIQAMNRAHRIGQSKRLLVYR 1195 (1404)
Q Consensus 1137 ~~~s~~VfLLSTrAgG~GINL~~AdtVIi~DsdWNP~~d~QAigRahRiGQ~k~V~VYr 1195 (1404)
++..+ +++.|...|.|++-+....||+++++-|-+.|-|--|||+|-|-..=+..|+
T Consensus 303 ~~~~P--vI~AT~SFGMGVDKp~VRFViHW~~~qn~AgYYQESGRAGRDGk~SyCRLYY 359 (641)
T KOG0352|consen 303 NNEIP--VIAATVSFGMGVDKPDVRFVIHWSPSQNLAGYYQESGRAGRDGKRSYCRLYY 359 (641)
T ss_pred cCCCC--EEEEEeccccccCCcceeEEEecCchhhhHHHHHhccccccCCCccceeeee
Confidence 87777 7889999999999999999999999999999999999999999766666665
No 133
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.03 E-value=6.4e-09 Score=132.21 Aligned_cols=71 Identities=31% Similarity=0.473 Sum_probs=60.7
Q ss_pred CceEEEEeCCCCHHHHHHHHHHHhcCCCceEEEeecccccccccccCCCEEEE-----EcCC---C---CHhHHHHHHHh
Q 042857 1113 PKTYERVDGSVSVGDRQAAITRFNQDKSRFVFLLSTRSCGLGINLATADTVII-----YDSD---F---NPHADIQAMNR 1181 (1404)
Q Consensus 1113 g~~y~rLdGs~s~~eRq~~Id~Fn~~~s~~VfLLSTrAgG~GINL~~AdtVIi-----~Dsd---W---NP~~d~QAigR 1181 (1404)
++.|..-|.+++-.+|+..-+-|.++.-. +|+||.....|+||+ |+|||| |||. | .|..++|.+||
T Consensus 607 pygfaIHhAGl~R~dR~~~EdLf~~g~iq--vlvstatlawgvnlp-ahtViikgtqvy~pekg~w~elsp~dv~qmlgr 683 (1674)
T KOG0951|consen 607 PYGFAIHHAGLNRKDRELVEDLFADGHIQ--VLVSTATLAWGVNLP-AHTVIIKGTQVYDPEKGRWTELSPLDVMQMLGR 683 (1674)
T ss_pred hccceeeccCCCcchHHHHHHHHhcCcee--EEEeehhhhhhcCCC-cceEEecCccccCcccCccccCCHHHHHHHHhh
Confidence 45678889999999999999999766555 899999999999998 788887 5554 4 68999999999
Q ss_pred hhccC
Q 042857 1182 AHRIG 1186 (1404)
Q Consensus 1182 ahRiG 1186 (1404)
|+|.+
T Consensus 684 agrp~ 688 (1674)
T KOG0951|consen 684 AGRPQ 688 (1674)
T ss_pred cCCCc
Confidence 99976
No 134
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.02 E-value=5e-09 Score=114.38 Aligned_cols=124 Identities=19% Similarity=0.146 Sum_probs=79.5
Q ss_pred CHHHHHHHHHHHHhhccCCcEEEEcCCCchHHHHHHHHHHHHHhhccCC--CcEEEEeCCCCh-HHHHHHHH---HHCCC
Q 042857 757 FPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKAK--LPCLVLVPLSTM-PNWLAEFA---LWAPN 830 (1404)
Q Consensus 757 ~pyQlegVnwL~~~~~~~~~~ILADEMGLGKTiqaIa~L~~L~~~~~~~--gP~LIVvP~Sll-~nW~rEf~---kw~P~ 830 (1404)
...|.+.+-..+- |..++-..-.|+|||...+. ..|..-.+.. -.+||+|-+..+ .|...|++ ++.|+
T Consensus 66 sevqhecipqail----gmdvlcqaksgmgktavfvl--~tlqqiepv~g~vsvlvmchtrelafqi~~ey~rfskymP~ 139 (387)
T KOG0329|consen 66 SEVQHECIPQAIL----GMDVLCQAKSGMGKTAVFVL--ATLQQIEPVDGQVSVLVMCHTRELAFQISKEYERFSKYMPS 139 (387)
T ss_pred hHhhhhhhhHHhh----cchhheecccCCCceeeeeh--hhhhhcCCCCCeEEEEEEeccHHHHHHHHHHHHHHHhhCCC
Confidence 3457777765554 77888888999999976543 2232222333 357888988765 57777765 55699
Q ss_pred CcEEEEecchhHHHHHHHhhhccCCCCccccccCCCCceEEEeeHHHHHhhh--ccccCCCceEEEEcccccc
Q 042857 831 LNVVEYHGCAKARAIIRQYEWHASDPDNLNKKTSSYKFNVLLTTYEMILADS--SHLRGVPWEVLVVDEGHRL 901 (1404)
Q Consensus 831 l~Vvvy~G~~~~R~~ir~~E~~~~~~~~~~~~~~~~kfdVvITTYe~l~~d~--~~L~~i~w~lVIVDEAHrl 901 (1404)
+++.+|+|+-....-. |.. . .-.+|++.|+..+..-. ..|.--+....|+||+..+
T Consensus 140 vkvaVFfGG~~Ikkde---e~l-----------k-~~PhivVgTPGrilALvr~k~l~lk~vkhFvlDEcdkm 197 (387)
T KOG0329|consen 140 VKVSVFFGGLFIKKDE---ELL-----------K-NCPHIVVGTPGRILALVRNRSLNLKNVKHFVLDECDKM 197 (387)
T ss_pred ceEEEEEcceeccccH---HHH-----------h-CCCeEEEcCcHHHHHHHHhccCchhhcceeehhhHHHH
Confidence 9999999975433211 100 0 15689999998876532 2333334567899998765
No 135
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=99.02 E-value=2.5e-07 Score=110.43 Aligned_cols=195 Identities=19% Similarity=0.238 Sum_probs=135.0
Q ss_pred hHHHHHHHHHHHHHHcCCeEEEEecchhHHHHHHHHHhhhcCCceEEEEeCCCCHHHHHHHHHHHhcCCCceEEEeeccc
Q 042857 1071 AKLTLLHSMLKVLYKEGHRVLIFSQMTKLLDILEDYLNIEFGPKTYERVDGSVSVGDRQAAITRFNQDKSRFVFLLSTRS 1150 (1404)
Q Consensus 1071 gKl~~L~kLL~kl~~~G~KVLIFSq~~~~LDiLed~L~~~f~g~~y~rLdGs~s~~eRq~~Id~Fn~~~s~~VfLLSTrA 1150 (1404)
+-+.-|..-+..-.+.|.||||-+=..+|.+-|.+||... |+++..+|..+..-+|.++|...+.+. |-+|+-...
T Consensus 430 ~QvdDL~~EI~~r~~~~eRvLVTtLTKkmAEdLT~Yl~e~--gikv~YlHSdidTlER~eIirdLR~G~--~DvLVGINL 505 (663)
T COG0556 430 GQVDDLLSEIRKRVAKNERVLVTTLTKKMAEDLTEYLKEL--GIKVRYLHSDIDTLERVEIIRDLRLGE--FDVLVGINL 505 (663)
T ss_pred CcHHHHHHHHHHHHhcCCeEEEEeehHHHHHHHHHHHHhc--CceEEeeeccchHHHHHHHHHHHhcCC--ccEEEeehh
Confidence 3344444444555667999999999999999999999987 899999999999999999999998654 448899999
Q ss_pred ccccccccCCCEEEEEcCC-----CCHhHHHHHHHhhhccCCCCcEEEEEEeeCCCHHHHHHHHHHHHH-hhhHHHhcCC
Q 042857 1151 CGLGINLATADTVIIYDSD-----FNPHADIQAMNRAHRIGQSKRLLVYRLVVRASVEERILQLAKKKL-MLDQLFVNKS 1224 (1404)
Q Consensus 1151 gG~GINL~~AdtVIi~Dsd-----WNP~~d~QAigRahRiGQ~k~V~VYrLvt~~TvEE~Ilq~a~~Kl-~L~~~vv~~~ 1224 (1404)
.-+||+|+.+..|.|+|.| -+-...+|-+|||.|--. ..|..|-=...+|+++.|-+...++. .++..--.+-
T Consensus 506 LREGLDiPEVsLVAIlDADKeGFLRse~SLIQtIGRAARN~~-GkvIlYAD~iT~sM~~Ai~ET~RRR~iQ~~yN~~hgI 584 (663)
T COG0556 506 LREGLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKVILYADKITDSMQKAIDETERRREIQMAYNEEHGI 584 (663)
T ss_pred hhccCCCcceeEEEEeecCccccccccchHHHHHHHHhhccC-CeEEEEchhhhHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 9999999999999999998 478899999999999543 45666666666778888876654433 2222211111
Q ss_pred C---ChHHHHHHHHhhHH--HHhcCCCCCCCCCCCCCcccHHHHHHHHHHHhhh
Q 042857 1225 G---SQKEVEDILRWGTE--ELFNDSPGINGKDMGENNTSIEEAVRDLEQKHRK 1273 (1404)
Q Consensus 1225 ~---s~~eledilk~Ga~--~Lf~~~~~~~~~d~~~~~~~~~e~i~~~e~~~~~ 1273 (1404)
. -.+.+.+++..... +...... ......+....+..|..++..+.+
T Consensus 585 tP~ti~K~i~d~l~~~~~~~~~~~~~~---~~~~~~~~~e~~~~I~~Le~~M~~ 635 (663)
T COG0556 585 TPQTIKKKIRDILDGEYEEDEYKAKIE---KKASKMSKKELEKLIKKLEKEMKE 635 (663)
T ss_pred CchhhhhhhhHhhhhhhhhhhhhhhcc---cccccCCHHHHHHHHHHHHHHHHH
Confidence 1 23456666654322 1111110 111112344556677777766544
No 136
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=99.01 E-value=3.5e-08 Score=125.07 Aligned_cols=369 Identities=19% Similarity=0.162 Sum_probs=204.6
Q ss_pred CCCHHHHHHHHHHHHhhccCCcEEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEeCC-CChHHHHHHHHHHCCCCcE
Q 042857 755 ALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPL-STMPNWLAEFALWAPNLNV 833 (1404)
Q Consensus 755 ~L~pyQlegVnwL~~~~~~~~~~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP~-Sll~nW~rEf~kw~P~l~V 833 (1404)
.|-+-|..+++-+..........+|..-+|.|||-..+-+|...+..+ +-+||++|. ++.+|-...|+..|+ .++
T Consensus 198 ~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl~~i~~~L~~G---kqvLvLVPEI~Ltpq~~~rf~~rFg-~~v 273 (730)
T COG1198 198 ALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYLEAIAKVLAQG---KQVLVLVPEIALTPQLLARFKARFG-AKV 273 (730)
T ss_pred ccCHHHHHHHHHHHHhcccccceeEeCCCCCcHHHHHHHHHHHHHHcC---CEEEEEeccccchHHHHHHHHHHhC-CCh
Confidence 688999999999988663456789999999999999998888877554 458999997 577898899998885 888
Q ss_pred EEEecchhHHHHHHHhhhccCCCCccccccCCCCceEEEeeHHHHHhhhccccCCCceEEEEcccccc--CCCccHHH--
Q 042857 834 VEYHGCAKARAIIRQYEWHASDPDNLNKKTSSYKFNVLLTTYEMILADSSHLRGVPWEVLVVDEGHRL--KNSGSKLF-- 909 (1404)
Q Consensus 834 vvy~G~~~~R~~ir~~E~~~~~~~~~~~~~~~~kfdVvITTYe~l~~d~~~L~~i~w~lVIVDEAHrl--KN~~Sk~~-- 909 (1404)
.++|..-...+....+ . +...+...|||.|...+..-.. +..+|||||=|-- |-.+..++
T Consensus 274 ~vlHS~Ls~~er~~~W--~---------~~~~G~~~vVIGtRSAlF~Pf~-----~LGLIIvDEEHD~sYKq~~~prYhA 337 (730)
T COG1198 274 AVLHSGLSPGERYRVW--R---------RARRGEARVVIGTRSALFLPFK-----NLGLIIVDEEHDSSYKQEDGPRYHA 337 (730)
T ss_pred hhhcccCChHHHHHHH--H---------HHhcCCceEEEEechhhcCchh-----hccEEEEeccccccccCCcCCCcCH
Confidence 8888765554433332 2 1234577899999888754322 3569999999973 44333222
Q ss_pred ----HHHhhcccccEEEEeccCCCCChHHHHHHhhhhCCCCCCChhHHHHHhccccchHHHHHHHHhhhhhhhhhhHhhh
Q 042857 910 ----SLLNSFSFQHRVLLTGTPLQNNIGEMYNLLNFLQPASFPSLSSFEEKFNDLTTTQKVEELKKLVAPHMLRRLKKDA 985 (1404)
Q Consensus 910 ----~~L~~l~~~~rLLLTGTPlqNnl~EL~sLL~fL~P~~f~s~~~F~~~f~d~~~~~~i~~L~~lL~p~mLRR~K~dV 985 (1404)
........-..+|-|+||- ++-+++. ... .+.+-+++...
T Consensus 338 RdvA~~Ra~~~~~pvvLgSATPS---LES~~~~---~~g------------------------------~y~~~~L~~R~ 381 (730)
T COG1198 338 RDVAVLRAKKENAPVVLGSATPS---LESYANA---ESG------------------------------KYKLLRLTNRA 381 (730)
T ss_pred HHHHHHHHHHhCCCEEEecCCCC---HHHHHhh---hcC------------------------------ceEEEEccccc
Confidence 1112223345688899992 2211111 100 01111111111
Q ss_pred hh-cCCCceEEEEEec-------CCHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHhCCCCCCCCCCCCCC
Q 042857 986 MQ-NIPPKTERMVPVE-------LSSIQAEYYRAMLTKNYQILRNIGKGVAQQSMLNIVMQLRKVCNHPYLIPGTEPDSG 1057 (1404)
Q Consensus 986 ~~-~LPpk~e~iV~V~-------LS~~Qk~~Y~~il~~n~~~L~~~~kg~~~~sllnilm~LRK~cnHP~L~~~~e~~~~ 1057 (1404)
.. .+|......+.-+ +|+. +++.| .+.+..... . +..|.+---+|++.=..-....
T Consensus 382 ~~a~~p~v~iiDmr~e~~~~~~~lS~~---Ll~~i----~~~l~~geQ-----~----llflnRRGys~~l~C~~Cg~v~ 445 (730)
T COG1198 382 GRARLPRVEIIDMRKEPLETGRSLSPA---LLEAI----RKTLERGEQ-----V----LLFLNRRGYAPLLLCRDCGYIA 445 (730)
T ss_pred cccCCCcceEEeccccccccCccCCHH---HHHHH----HHHHhcCCe-----E----EEEEccCCccceeecccCCCcc
Confidence 11 1222111111110 2221 11111 111111000 0 0000000011111100000000
Q ss_pred cHHHHHHHHH--hhhhHHHHH-----HHHHHHHHHcCCeEEEEecchhHHHHHHHHHhhhcCCceEEEEeCCCCHHH--H
Q 042857 1058 SVEFLHEMRI--KASAKLTLL-----HSMLKVLYKEGHRVLIFSQMTKLLDILEDYLNIEFGPKTYERVDGSVSVGD--R 1128 (1404)
Q Consensus 1058 ~~e~l~~~~i--~~SgKl~~L-----~kLL~kl~~~G~KVLIFSq~~~~LDiLed~L~~~f~g~~y~rLdGs~s~~e--R 1128 (1404)
........+. +..+++.-= ..+-...-+-|...|+++- .-.+.+++-|...|++.++.|+|+.++... -
T Consensus 446 ~Cp~Cd~~lt~H~~~~~L~CH~Cg~~~~~p~~Cp~Cgs~~L~~~G--~GterieeeL~~~FP~~rv~r~d~Dtt~~k~~~ 523 (730)
T COG1198 446 ECPNCDSPLTLHKATGQLRCHYCGYQEPIPQSCPECGSEHLRAVG--PGTERIEEELKRLFPGARIIRIDSDTTRRKGAL 523 (730)
T ss_pred cCCCCCcceEEecCCCeeEeCCCCCCCCCCCCCCCCCCCeeEEec--ccHHHHHHHHHHHCCCCcEEEEccccccchhhH
Confidence 0000000000 000000000 0000000001222233321 235677888888899999999999987643 4
Q ss_pred HHHHHHHhcCCCceEEEeecccccccccccCCCEEEEEcCCC------------CHhHHHHHHHhhhccCCCCcEEEEEE
Q 042857 1129 QAAITRFNQDKSRFVFLLSTRSCGLGINLATADTVIIYDSDF------------NPHADIQAMNRAHRIGQSKRLLVYRL 1196 (1404)
Q Consensus 1129 q~~Id~Fn~~~s~~VfLLSTrAgG~GINL~~AdtVIi~DsdW------------NP~~d~QAigRahRiGQ~k~V~VYrL 1196 (1404)
+..++.|.+++.. |||-|....-|.|++....|.++|.|- ..+.+.|..|||+|-+-...|.|=-+
T Consensus 524 ~~~l~~~~~ge~d--ILiGTQmiaKG~~fp~vtLVgvl~aD~~L~~~DfRA~Er~fqll~QvaGRAgR~~~~G~VvIQT~ 601 (730)
T COG1198 524 EDLLDQFANGEAD--ILIGTQMIAKGHDFPNVTLVGVLDADTGLGSPDFRASERTFQLLMQVAGRAGRAGKPGEVVIQTY 601 (730)
T ss_pred HHHHHHHhCCCCC--eeecchhhhcCCCcccceEEEEEechhhhcCCCcchHHHHHHHHHHHHhhhccCCCCCeEEEEeC
Confidence 6789999988777 999999999999999999999998762 34678899999999876667765444
Q ss_pred eeC
Q 042857 1197 VVR 1199 (1404)
Q Consensus 1197 vt~ 1199 (1404)
-..
T Consensus 602 ~P~ 604 (730)
T COG1198 602 NPD 604 (730)
T ss_pred CCC
Confidence 443
No 137
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=98.94 E-value=7.1e-08 Score=122.13 Aligned_cols=120 Identities=18% Similarity=0.179 Sum_probs=98.5
Q ss_pred hhhHHHHHHHHHHHHHHcCCeEEEEecchhHHHHHHHHHhhhcCCceEEEEeCCCCHHHHHHHHHHHhcCCCceEEEeec
Q 042857 1069 ASAKLTLLHSMLKVLYKEGHRVLIFSQMTKLLDILEDYLNIEFGPKTYERVDGSVSVGDRQAAITRFNQDKSRFVFLLST 1148 (1404)
Q Consensus 1069 ~SgKl~~L~kLL~kl~~~G~KVLIFSq~~~~LDiLed~L~~~f~g~~y~rLdGs~s~~eRq~~Id~Fn~~~s~~VfLLST 1148 (1404)
...|+.++.+-+..+.+.|..|||.+..+..-+.|..+|... |+.+..|+... .++++.|=. ++ +....+.|+|
T Consensus 408 ~~~K~~Aii~ei~~~~~~gqPVLVgT~SIe~SE~ls~~L~~~--gi~h~vLNAk~--~e~EA~IIa-~A-G~~GaVTIAT 481 (925)
T PRK12903 408 KHAKWKAVVKEVKRVHKKGQPILIGTAQVEDSETLHELLLEA--NIPHTVLNAKQ--NAREAEIIA-KA-GQKGAITIAT 481 (925)
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHC--CCCceeecccc--hhhHHHHHH-hC-CCCCeEEEec
Confidence 468999999999999999999999999999999999999987 78888888863 344444433 22 3344578999
Q ss_pred ccccccccccCCC--------EEEEEcCCCCHhHHHHHHHhhhccCCCCcEEEE
Q 042857 1149 RSCGLGINLATAD--------TVIIYDSDFNPHADIQAMNRAHRIGQSKRLLVY 1194 (1404)
Q Consensus 1149 rAgG~GINL~~Ad--------tVIi~DsdWNP~~d~QAigRahRiGQ~k~V~VY 1194 (1404)
..+|+|.++.-.. +||....+-|-..+.|..||++|.|.......|
T Consensus 482 NMAGRGTDI~Lg~~V~~~GGLhVIgTerheSrRIDnQLrGRaGRQGDpGss~f~ 535 (925)
T PRK12903 482 NMAGRGTDIKLSKEVLELGGLYVLGTDKAESRRIDNQLRGRSGRQGDVGESRFF 535 (925)
T ss_pred ccccCCcCccCchhHHHcCCcEEEecccCchHHHHHHHhcccccCCCCCcceEE
Confidence 9999999986544 899999999999999999999999997765543
No 138
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=98.80 E-value=2.1e-07 Score=120.20 Aligned_cols=153 Identities=22% Similarity=0.295 Sum_probs=97.1
Q ss_pred hhhhHHHHHHHHHHHHHHc---------CCeEEEEecchhHHHHHHHHHhh-hc--CCceEE--------EEeCCCCH--
Q 042857 1068 KASAKLTLLHSMLKVLYKE---------GHRVLIFSQMTKLLDILEDYLNI-EF--GPKTYE--------RVDGSVSV-- 1125 (1404)
Q Consensus 1068 ~~SgKl~~L~kLL~kl~~~---------G~KVLIFSq~~~~LDiLed~L~~-~f--~g~~y~--------rLdGs~s~-- 1125 (1404)
...+|+..|.++|.++... +.+|||||++..++..|.+||.. .. +...+. ...|..+.
T Consensus 267 Ee~PKw~~L~eiL~eI~~~~~~~~~~~~~~~iLI~~~d~~T~~qL~~~L~~~~~~~~~~~fm~~~l~~y~~~~~~~~k~~ 346 (814)
T TIGR00596 267 EENPKWEVLTDVLKEISHEMRMTNRLQGPGKVLIMCSDNRTCLQLRDYLTTSNKKRGSRAFLLNKLRWYRKWREETSKLA 346 (814)
T ss_pred ccCCCHHHHHHHHHHHHhHHhhhcccCCCCcEEEEEcchHHHHHHHHHHHhccccccHHHHHHHHHHHHHhhhhhhhhhh
Confidence 4689999999999887654 46899999999999999998865 00 111111 00011000
Q ss_pred ---------------------------H-------HHHHHHHHHhcCCCc---e----EEE-------------------
Q 042857 1126 ---------------------------G-------DRQAAITRFNQDKSR---F----VFL------------------- 1145 (1404)
Q Consensus 1126 ---------------------------~-------eRq~~Id~Fn~~~s~---~----VfL------------------- 1145 (1404)
. .-+..+.+|+.++.. . ..|
T Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~krrr~rG~s~~~~~~~r~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 426 (814)
T TIGR00596 347 KEVQSQDTFPENASSNVNKTFRKEQVPTKRRRVRGGSEVAVEKLRNANTNDMQHFEEDHELEEEGDDLEDGPAQEINAAN 426 (814)
T ss_pred HhhhhccccccccccccccccccccccccccccccchhHHHhhhcccccccccccchhhhhhhhhhhhcccccccccccc
Confidence 0 011235666443221 0 011
Q ss_pred ----eecccccccccccC----------------------C----------CEEEEEcCCCCHhHHHHHHHhhhccCCCC
Q 042857 1146 ----LSTRSCGLGINLAT----------------------A----------DTVIIYDSDFNPHADIQAMNRAHRIGQSK 1189 (1404)
Q Consensus 1146 ----LSTrAgG~GINL~~----------------------A----------dtVIi~DsdWNP~~d~QAigRahRiGQ~k 1189 (1404)
++|..+.+|++... + ++||+|||+-..-.-+|. -|++|-|.
T Consensus 427 ~~~~~~~~~~~e~~d~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~L~e~~P~~VImYEP~~sfIR~IEv-yra~r~~r-- 503 (814)
T TIGR00596 427 DSKIFEIIDEENDIDIYSGAEFDNLPQHITHFLWGERDEYVLRCSLEELMPRYVIMYEPDISFIRQLEV-YKASRPLR-- 503 (814)
T ss_pred ccccccccccccccccchhhccccccceeeeecccccchhhHHHHHhhhCCCEEEEECCChHHHHHHHH-HHccCCCC--
Confidence 44666678888876 4 899999997666655552 25555554
Q ss_pred cEEEEEEeeCCCHHHHHHH--HHHHHHhhhHHHhcC
Q 042857 1190 RLLVYRLVVRASVEERILQ--LAKKKLMLDQLFVNK 1223 (1404)
Q Consensus 1190 ~V~VYrLvt~~TvEE~Ilq--~a~~Kl~L~~~vv~~ 1223 (1404)
++.||.|++.+|+||.-+- +-+.|.++..++-.+
T Consensus 504 ~~rVyfL~y~~S~EEq~yl~sirrEK~AFe~LIrek 539 (814)
T TIGR00596 504 PLRVYFLYYGGSIEEQRYLTSLRREKDAFTKLIREK 539 (814)
T ss_pred CcEEEEEEECCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4889999999999997664 446666666666544
No 139
>KOG0957 consensus PHD finger protein [General function prediction only]
Probab=98.79 E-value=1.2e-08 Score=118.95 Aligned_cols=148 Identities=26% Similarity=0.496 Sum_probs=94.7
Q ss_pred cccccccCCCc---eEEcCCCCCcccccccCCCCCCCCCCC----ccCccccccccccCCCcccchhHHhhcccceeecc
Q 042857 76 YECVICDLGGN---LLCCDSCPRTYHLQCLDPPLKRIPNGK----WQCPKCTQKNDQLKPISNLDSISKRARSKIITIKS 148 (1404)
Q Consensus 76 ~~C~~C~~~g~---ll~Cd~C~~~~H~~Cl~Ppl~~~P~g~----W~C~~C~~~~~~~~~~~~~~~~~~~~r~k~~~~~s 148 (1404)
+.|.+|++..+ ++.||.|...||+.||.|||+.+|... |.|..| .++.
T Consensus 545 ysCgiCkks~dQHll~~CDtC~lhYHlGCL~PPLTR~Pkk~kn~gWqCsEC-dk~e------------------------ 599 (707)
T KOG0957|consen 545 YSCGICKKSTDQHLLTQCDTCHLHYHLGCLSPPLTRLPKKNKNFGWQCSEC-DKNE------------------------ 599 (707)
T ss_pred eeeeeeccchhhHHHhhcchhhceeeccccCCccccCcccccCcceeeccc-cccc------------------------
Confidence 46999998765 889999999999999999999999643 999999 3211
Q ss_pred CCCCCCCCccchhhHhcCccccccccCCCcceeeecccccccccCCcccccccCCCCCCCCCCCCccCCCCCCCchhhcc
Q 042857 149 QSGVKSSGADKVSQIFGNSILARKRSNKGKSVLALGVKSLEKSLDSSQVDVSCSTKPENTSAGVPVEGSSSCPNDDDEKQ 228 (1404)
Q Consensus 149 ~~~~~~~~~~~~~~i~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~c~~~~~~~~ 228 (1404)
+++...+|.-.....+.|+.+.....++..-.. ++ | -.|.-+..+++| ++
T Consensus 600 -------sSD~e~ei~~e~~~s~Tr~~rr~~~~~~~~a~i---------nv-----p--------~ep~~~p~~~~~-tk 649 (707)
T KOG0957|consen 600 -------SSDSEQEIIPEASESTTRSVRRRRPPARLSAFI---------NV-----P--------KEPAPAPEYIED-TK 649 (707)
T ss_pred -------CcchhhhhcccCCccccchhhhcCCCccccccc---------cC-----C--------CCCCCccccccc-cc
Confidence 334455555444444555433222222221111 11 1 112223367877 99
Q ss_pred cCCCCCCcCCCCc-CCCccc-ccCCCcccccccCCccccccccCCcCCCCCcceeEeeeccchhhhccCccccchhh
Q 042857 229 LNASPTDSLADTK-FHPAEE-VLPHSQVTKSEQNDEVPVEKHEKSSTNGSSGIKFVLAIGASERDRKRKPEVKDEDS 303 (1404)
Q Consensus 229 ~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~k~~~~~~~~ 303 (1404)
+|++|.+++|.++ ++++-| -.+++ .--+-+..++||+++++++ ...++.|
T Consensus 650 ~~kr~~l~s~~k~~~~vp~e~~a~~a------------------a~~t~pt~n~i~~n~s~ce-------~s~ddss 701 (707)
T KOG0957|consen 650 SPKRPKLQSPCKTPINVPAEAAATPA------------------AAPTLPTPNTIVINLSGCE-------DSIDDSS 701 (707)
T ss_pred CCCCCCCCCcccCcccCchhhhcCcc------------------ccccCCCCceeEEeccccc-------Ccccchh
Confidence 9999999999999 555433 22222 1122344788999999988 5566665
No 140
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=98.79 E-value=6.9e-08 Score=110.54 Aligned_cols=239 Identities=24% Similarity=0.271 Sum_probs=147.8
Q ss_pred cCCcc-CCCCCCCHHHHHHHHHHHHhhc------cCCcEEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEeCCCChH
Q 042857 746 EQPEE-LKGGALFPHQLEALNWLRKCWH------KSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLSTMP 818 (1404)
Q Consensus 746 ~qP~~-l~g~~L~pyQlegVnwL~~~~~------~~~~~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP~Sll~ 818 (1404)
..|.. +..+.|-.-|+|+|-+..+.+. ...+.+|+|.+|.||..|+.++|...+..+. .+++.|-+...+..
T Consensus 27 ~lp~~~~~~g~LS~~QLEaV~yA~q~h~~~Lp~~~R~Gf~lGDGtGvGKGR~iAgiI~~n~l~Gr-~r~vwvS~s~dL~~ 105 (303)
T PF13872_consen 27 HLPEEVIDSGLLSALQLEAVIYACQRHEQILPGGSRAGFFLGDGTGVGKGRQIAGIILENWLRGR-KRAVWVSVSNDLKY 105 (303)
T ss_pred CCCHHHHhcccccHHHHHHHHHHHHHHHhhcccccCcEEEeccCCCcCccchhHHHHHHHHHcCC-CceEEEECChhhhh
Confidence 34442 3567899999999998877665 3578899999999999999999998776543 34566666666776
Q ss_pred HHHHHHHHHCC-CCcEEEEecchhHHHHHHHhhhccCCCCccccccCCCCceEEEeeHHHHHhhh-------ccccC-CC
Q 042857 819 NWLAEFALWAP-NLNVVEYHGCAKARAIIRQYEWHASDPDNLNKKTSSYKFNVLLTTYEMILADS-------SHLRG-VP 889 (1404)
Q Consensus 819 nW~rEf~kw~P-~l~Vvvy~G~~~~R~~ir~~E~~~~~~~~~~~~~~~~kfdVvITTYe~l~~d~-------~~L~~-i~ 889 (1404)
--.|.+.-..- .+.+..+.. +...+ ....+..|+.+||..+.... ..|.. ++
T Consensus 106 Da~RDl~DIG~~~i~v~~l~~------------~~~~~-------~~~~~~GvlF~TYs~L~~~~~~~~~~~sRl~ql~~ 166 (303)
T PF13872_consen 106 DAERDLRDIGADNIPVHPLNK------------FKYGD-------IIRLKEGVLFSTYSTLISESQSGGKYRSRLDQLVD 166 (303)
T ss_pred HHHHHHHHhCCCcccceechh------------hccCc-------CCCCCCCccchhHHHHHhHHhccCCccchHHHHHH
Confidence 66677765431 222222111 11111 12245679999999998752 22221 12
Q ss_pred c------eEEEEccccccCCCcc------HHHHHHhh----cccccEEEEeccCCCC--ChHHHHHHhhhhCC-CCCCCh
Q 042857 890 W------EVLVVDEGHRLKNSGS------KLFSLLNS----FSFQHRVLLTGTPLQN--NIGEMYNLLNFLQP-ASFPSL 950 (1404)
Q Consensus 890 w------~lVIVDEAHrlKN~~S------k~~~~L~~----l~~~~rLLLTGTPlqN--nl~EL~sLL~fL~P-~~f~s~ 950 (1404)
| .+||+||||..||..+ +...++.. +...+.+..|||.... |+. ++.-|.+-.+ ..|.+.
T Consensus 167 W~g~dfdgvivfDEcH~akn~~~~~~~~sk~g~avl~LQ~~LP~ARvvY~SATgasep~Nma-Ym~RLGLWG~gtpf~~~ 245 (303)
T PF13872_consen 167 WCGEDFDGVIVFDECHKAKNLSSGSKKPSKTGIAVLELQNRLPNARVVYASATGASEPRNMA-YMSRLGLWGPGTPFPDF 245 (303)
T ss_pred HHhcCCCceEEeccchhcCCCCccCccccHHHHHHHHHHHhCCCCcEEEecccccCCCceee-eeeeccccCCCCCCCCH
Confidence 3 5899999999999654 44444443 4455678899998643 332 2222222232 357788
Q ss_pred hHHHHHhccccc--hHHHHHHHHhhhhhhhhhhHhhhhhcCCCceEEEEEecCCHHHHHHHHH
Q 042857 951 SSFEEKFNDLTT--TQKVEELKKLVAPHMLRRLKKDAMQNIPPKTERMVPVELSSIQAEYYRA 1011 (1404)
Q Consensus 951 ~~F~~~f~d~~~--~~~i~~L~~lL~p~mLRR~K~dV~~~LPpk~e~iV~V~LS~~Qk~~Y~~ 1011 (1404)
.+|.+.+..-.. .+.+..-.+. .-.+++|.. ++-.....++.++|++.|.++|..
T Consensus 246 ~~f~~a~~~gGv~amE~vA~dlKa-~G~yiaR~L-----Sf~gvef~~~e~~l~~~~~~~Yd~ 302 (303)
T PF13872_consen 246 DDFLEAMEKGGVGAMEMVAMDLKA-RGMYIARQL-----SFEGVEFEIEEVPLTPEQIKMYDA 302 (303)
T ss_pred HHHHHHHHhcCchHHHHHHHHHHh-cchheeeec-----ccCCceEEEEEecCCHHHHHHhcC
Confidence 888876654211 1111111111 123444432 345567889999999999999964
No 141
>COG5034 TNG2 Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics]
Probab=98.78 E-value=5.8e-09 Score=114.01 Aligned_cols=48 Identities=40% Similarity=1.086 Sum_probs=42.0
Q ss_pred cccccccccccCC--CceEEcC--CCC-CcccccccCCCCCCCCCCCccCcccccc
Q 042857 72 DGYYYECVICDLG--GNLLCCD--SCP-RTYHLQCLDPPLKRIPNGKWQCPKCTQK 122 (1404)
Q Consensus 72 d~~~~~C~~C~~~--g~ll~Cd--~C~-~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~ 122 (1404)
.+...||+ |+++ |+|+.|| .|. .|||+.|++ |...|+|.|||+.|+..
T Consensus 218 e~e~lYCf-CqqvSyGqMVaCDn~nCkrEWFH~~CVG--Lk~pPKG~WYC~eCk~~ 270 (271)
T COG5034 218 EGEELYCF-CQQVSYGQMVACDNANCKREWFHLECVG--LKEPPKGKWYCPECKKA 270 (271)
T ss_pred cCceeEEE-ecccccccceecCCCCCchhheeccccc--cCCCCCCcEeCHHhHhc
Confidence 45566887 9885 8999999 599 899999999 99999999999999753
No 142
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=98.78 E-value=6.5e-07 Score=109.78 Aligned_cols=248 Identities=20% Similarity=0.246 Sum_probs=137.8
Q ss_pred ccCCccCCCCCCCHHHHHHHHHHHHhhcc------CCcEEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEeCCCChH
Q 042857 745 TEQPEELKGGALFPHQLEALNWLRKCWHK------SKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLSTMP 818 (1404)
Q Consensus 745 ~~qP~~l~g~~L~pyQlegVnwL~~~~~~------~~~~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP~Sll~ 818 (1404)
+..|. +..|.|...|+++|-+.-+.... .-+.+|.|.-|.||-.++..+|..-+..+ .++...|-|...+-.
T Consensus 255 lalP~-i~sg~lSALQLEav~YAcQ~He~llPsG~RaGfLiGDGAGVGKGRTvAgiIfeNyLkG-RKrAlW~SVSsDLKf 332 (1300)
T KOG1513|consen 255 LALPS-IDSGHLSALQLEAVTYACQAHEVLLPSGQRAGFLIGDGAGVGKGRTVAGIIFENYLKG-RKRALWFSVSSDLKF 332 (1300)
T ss_pred Eeccc-CcccchhHHHHHHHHHHHhhhhhcCCCCccceeeeccCcccCCCceeEEEEehhhhcc-cceeEEEEecccccc
Confidence 44555 55678999999999988665432 24678999999999777766665544332 222344455555556
Q ss_pred HHHHHHHHHC-CCCcEEEEecchhHHHHHHHhhhccCCCCccccccCCCCceEEEeeHHHHHhhhc--------ccc-CC
Q 042857 819 NWLAEFALWA-PNLNVVEYHGCAKARAIIRQYEWHASDPDNLNKKTSSYKFNVLLTTYEMILADSS--------HLR-GV 888 (1404)
Q Consensus 819 nW~rEf~kw~-P~l~Vvvy~G~~~~R~~ir~~E~~~~~~~~~~~~~~~~kfdVvITTYe~l~~d~~--------~L~-~i 888 (1404)
.-++.+.-.. +.+.|..+. .+.+...+ .+.....+-.|++.||..++-... .|+ -+
T Consensus 333 DAERDL~DigA~~I~V~aln----------K~KYakIs----s~en~n~krGViFaTYtaLIGEs~~~~~kyrtR~rQll 398 (1300)
T KOG1513|consen 333 DAERDLRDIGATGIAVHALN----------KFKYAKIS----SKENTNTKRGVIFATYTALIGESQGKGGKYRTRFRQLL 398 (1300)
T ss_pred chhhchhhcCCCCccceehh----------hccccccc----ccccCCccceeEEEeeHhhhhhccccCchHHHHHHHHH
Confidence 6677766552 344333221 11110000 112233566799999998875422 111 11
Q ss_pred Cc------eEEEEccccccCC-------CccHHHHHHh----hcccccEEEEeccCCC--CChHHHHHHhhhhC-CCCCC
Q 042857 889 PW------EVLVVDEGHRLKN-------SGSKLFSLLN----SFSFQHRVLLTGTPLQ--NNIGEMYNLLNFLQ-PASFP 948 (1404)
Q Consensus 889 ~w------~lVIVDEAHrlKN-------~~Sk~~~~L~----~l~~~~rLLLTGTPlq--Nnl~EL~sLL~fL~-P~~f~ 948 (1404)
+| .+||+||||+.|| ..++..+.+. .|...+.+..|||--. .|..-+- -|.+-. ...|+
T Consensus 399 qW~Ge~feGvIvfDECHkAKNL~p~~~~k~TKtG~tVLdLQk~LP~ARVVYASATGAsEPrNMaYM~-RLGlWGegtaf~ 477 (1300)
T KOG1513|consen 399 QWCGEDFEGVIVFDECHKAKNLVPTAGAKSTKTGKTVLDLQKKLPNARVVYASATGASEPRNMAYMV-RLGLWGEGTAFP 477 (1300)
T ss_pred HHhhhccceeEEehhhhhhcccccccCCCcCcccHhHHHHHHhCCCceEEEeeccCCCCcchhhhhh-hhccccCCCcCc
Confidence 23 6899999999999 2244444443 3456667778887532 2222111 122222 33567
Q ss_pred ChhHHHHHhccc--cchHHHHHHHHhhhhhhhhhhHhhhhhcCCCceEEEEEecCCHHHHHHHHHHHHH
Q 042857 949 SLSSFEEKFNDL--TTTQKVEELKKLVAPHMLRRLKKDAMQNIPPKTERMVPVELSSIQAEYYRAMLTK 1015 (1404)
Q Consensus 949 s~~~F~~~f~d~--~~~~~i~~L~~lL~p~mLRR~K~dV~~~LPpk~e~iV~V~LS~~Qk~~Y~~il~~ 1015 (1404)
++.+|..-...- ...+.+..=.++-.-|+-|. ..+..-...+-.|+|+++-++.|.....-
T Consensus 478 eF~eFi~AvEkRGvGAMEIVAMDMK~rGmYiARQ------LSFkgVsFrieEv~ls~eF~k~Yn~a~~L 540 (1300)
T KOG1513|consen 478 EFEEFIHAVEKRGVGAMEIVAMDMKLRGMYIARQ------LSFKGVSFRIEEVPLSKEFRKVYNRAAEL 540 (1300)
T ss_pred cHHHHHHHHHhcCCceeeeeehhhhhhhhhhhhh------ccccCceEEEEecccCHHHHHHHHHHHHH
Confidence 777776544321 11111111111112223222 13445677889999999999999876543
No 143
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=98.74 E-value=8.7e-07 Score=112.43 Aligned_cols=324 Identities=18% Similarity=0.257 Sum_probs=176.4
Q ss_pred CCCCCCHHHHHHHHHHHHhhccCCcEEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEeCCCCh-HHHHHHHHHHCC-
Q 042857 752 KGGALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLSTM-PNWLAEFALWAP- 829 (1404)
Q Consensus 752 ~g~~L~pyQlegVnwL~~~~~~~~~~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP~Sll-~nW~rEf~kw~P- 829 (1404)
.|..|+..|.--...++ . |...-+..++|+|||.-.+.+..++.. . +++++||+|+.+| .|-.+-+++++.
T Consensus 79 ~G~~~ws~QR~WakR~~---r-g~SFaiiAPTGvGKTTfg~~~sl~~a~--k-gkr~yii~PT~~Lv~Q~~~kl~~~~e~ 151 (1187)
T COG1110 79 TGFRPWSAQRVWAKRLV---R-GKSFAIIAPTGVGKTTFGLLMSLYLAK--K-GKRVYIIVPTTTLVRQVYERLKKFAED 151 (1187)
T ss_pred hCCCchHHHHHHHHHHH---c-CCceEEEcCCCCchhHHHHHHHHHHHh--c-CCeEEEEecCHHHHHHHHHHHHHHHhh
Confidence 45578888986444333 3 555544559999999765554444432 2 3579999999876 788888888873
Q ss_pred ----CCcEEEEecchhHHHHHHHhhhccCCCCccccccCCCCceEEEeeHHHHHhhhccccCCCceEEEEccccccCCCc
Q 042857 830 ----NLNVVEYHGCAKARAIIRQYEWHASDPDNLNKKTSSYKFNVLLTTYEMILADSSHLRGVPWEVLVVDEGHRLKNSG 905 (1404)
Q Consensus 830 ----~l~Vvvy~G~~~~R~~ir~~E~~~~~~~~~~~~~~~~kfdVvITTYe~l~~d~~~L~~i~w~lVIVDEAHrlKN~~ 905 (1404)
+..++ |||.-..++.-...+ +...+.|||+|||-..+.+....|.+.+|++|+||.++-+-..+
T Consensus 152 ~~~~~~~~~-yh~~l~~~ekee~le-----------~i~~gdfdIlitTs~FL~k~~e~L~~~kFdfifVDDVDA~Lkas 219 (1187)
T COG1110 152 AGSLDVLVV-YHSALPTKEKEEALE-----------RIESGDFDILITTSQFLSKRFEELSKLKFDFIFVDDVDAILKAS 219 (1187)
T ss_pred cCCcceeee-eccccchHHHHHHHH-----------HHhcCCccEEEEeHHHHHhhHHHhcccCCCEEEEccHHHHHhcc
Confidence 34445 999743332211111 22346899999999999999999999999999999998652211
Q ss_pred cHHHHHHhhcccccEEEEeccCCCCChHHHHHHhhhhCCCCCCChhHHHHHhccccchHHHHHHHHhhhhhhhhhhHhhh
Q 042857 906 SKLFSLLNSFSFQHRVLLTGTPLQNNIGEMYNLLNFLQPASFPSLSSFEEKFNDLTTTQKVEELKKLVAPHMLRRLKKDA 985 (1404)
Q Consensus 906 Sk~~~~L~~l~~~~rLLLTGTPlqNnl~EL~sLL~fL~P~~f~s~~~F~~~f~d~~~~~~i~~L~~lL~p~mLRR~K~dV 985 (1404)
.|+.-+..|+.|-...+ .+...+..-...+...+.+.++.+.++..-.+|.+..
T Consensus 220 ------------------------kNvDriL~LlGf~eE~i-~~a~~~~~lr~~~~~~~~~~~~~e~~~~~e~~~~~~r- 273 (1187)
T COG1110 220 ------------------------KNVDRLLRLLGFSEEVI-ESAYELIKLRRKLYGEKRAERVREELREVEREREKKR- 273 (1187)
T ss_pred ------------------------ccHHHHHHHcCCCHHHH-HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhc-
Confidence 12222222222211000 0000111111111122233333333322211111111
Q ss_pred hhcCCCceEEEEEecCC--HHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCcHHHHH
Q 042857 986 MQNIPPKTERMVPVELS--SIQAEYYRAMLTKNYQILRNIGKGVAQQSMLNIVMQLRKVCNHPYLIPGTEPDSGSVEFLH 1063 (1404)
Q Consensus 986 ~~~LPpk~e~iV~V~LS--~~Qk~~Y~~il~~n~~~L~~~~kg~~~~sllnilm~LRK~cnHP~L~~~~e~~~~~~e~l~ 1063 (1404)
.-+..-.+-...-. ..-..+|+.++. ...|..... ||.+. +-|..+
T Consensus 274 ---~k~g~LvvsSATg~~rg~R~~LfReLlg--------FevG~~~~~-------LRNIv-D~y~~~------------- 321 (1187)
T COG1110 274 ---RKLGILVVSSATGKPRGSRLKLFRELLG--------FEVGSGGEG-------LRNIV-DIYVES------------- 321 (1187)
T ss_pred ---cCCceEEEeeccCCCCCchHHHHHHHhC--------CccCccchh-------hhhee-eeeccC-------------
Confidence 10111111111111 112233433332 112222212 22211 112211
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHcCCeEEEEecc---hhHHHHHHHHHhhhcCCceEEEEeCCCCHHHHHHHHHHHhcCCC
Q 042857 1064 EMRIKASAKLTLLHSMLKVLYKEGHRVLIFSQM---TKLLDILEDYLNIEFGPKTYERVDGSVSVGDRQAAITRFNQDKS 1140 (1404)
Q Consensus 1064 ~~~i~~SgKl~~L~kLL~kl~~~G~KVLIFSq~---~~~LDiLed~L~~~f~g~~y~rLdGs~s~~eRq~~Id~Fn~~~s 1140 (1404)
.-+..+.++++++ |.=.|||++- ...++.|..+|... |+....++. ...+.++.|..+.-
T Consensus 322 -------~~~e~~~elvk~l---G~GgLIfV~~d~G~e~aeel~e~Lr~~--Gi~a~~~~a-----~~~~~le~F~~Gei 384 (1187)
T COG1110 322 -------ESLEKVVELVKKL---GDGGLIFVPIDYGREKAEELAEYLRSH--GINAELIHA-----EKEEALEDFEEGEV 384 (1187)
T ss_pred -------ccHHHHHHHHHHh---CCCeEEEEEcHHhHHHHHHHHHHHHhc--CceEEEeec-----cchhhhhhhccCce
Confidence 1122344455544 6668999998 78899999999987 788877765 23778999987765
Q ss_pred ceEEEeec--ccccccccccC-CCEEEEEcCC
Q 042857 1141 RFVFLLST--RSCGLGINLAT-ADTVIIYDSD 1169 (1404)
Q Consensus 1141 ~~VfLLST--rAgG~GINL~~-AdtVIi~Dsd 1169 (1404)
...+=+++ .+.-+||||+. +.++|||..|
T Consensus 385 dvLVGvAsyYG~lVRGlDLP~rirYaIF~GvP 416 (1187)
T COG1110 385 DVLVGVASYYGVLVRGLDLPHRIRYAVFYGVP 416 (1187)
T ss_pred eEEEEecccccceeecCCchhheeEEEEecCC
Confidence 53222333 34578999965 8999999988
No 144
>KOG1244 consensus Predicted transcription factor Requiem/NEURO-D4 [Transcription]
Probab=98.74 E-value=3.4e-09 Score=115.89 Aligned_cols=48 Identities=42% Similarity=1.069 Sum_probs=41.5
Q ss_pred ccccccccCCC---ceEEcCCCCCcccccccCCCCCCCCCCCccCcccccc
Q 042857 75 YYECVICDLGG---NLLCCDSCPRTYHLQCLDPPLKRIPNGKWQCPKCTQK 122 (1404)
Q Consensus 75 ~~~C~~C~~~g---~ll~Cd~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~ 122 (1404)
|.+|.+|+... +||+||.|+|+||||||.||+...|+|.|.|..|...
T Consensus 281 ck~csicgtsenddqllfcddcdrgyhmyclsppm~eppegswsc~KOG~~ 331 (336)
T KOG1244|consen 281 CKYCSICGTSENDDQLLFCDDCDRGYHMYCLSPPMVEPPEGSWSCHLCLEE 331 (336)
T ss_pred cceeccccCcCCCceeEeecccCCceeeEecCCCcCCCCCCchhHHHHHHH
Confidence 34577777643 4999999999999999999999999999999999754
No 145
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=98.67 E-value=1e-06 Score=110.60 Aligned_cols=142 Identities=20% Similarity=0.210 Sum_probs=96.0
Q ss_pred CCCCCHHHHHHHHHHHHhhccCCcEEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEeCCCChH-HHHHHHHHHCCCC
Q 042857 753 GGALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLSTMP-NWLAEFALWAPNL 831 (1404)
Q Consensus 753 g~~L~pyQlegVnwL~~~~~~~~~~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP~Sll~-nW~rEf~kw~P~l 831 (1404)
+..|-++|++++..| .+|..+++|..+..|||++|=.+|+.... ...+.+--.|.-.|. |=.|+|+.-|.+.
T Consensus 295 pFelD~FQk~Ai~~l----erg~SVFVAAHTSAGKTvVAEYAialaq~---h~TR~iYTSPIKALSNQKfRDFk~tF~Dv 367 (1248)
T KOG0947|consen 295 PFELDTFQKEAIYHL----ERGDSVFVAAHTSAGKTVVAEYAIALAQK---HMTRTIYTSPIKALSNQKFRDFKETFGDV 367 (1248)
T ss_pred CCCccHHHHHHHHHH----HcCCeEEEEecCCCCcchHHHHHHHHHHh---hccceEecchhhhhccchHHHHHHhcccc
Confidence 357889999998765 44999999999999999998766654322 123577778888775 4578888877776
Q ss_pred cEEEEecchhHHHHHHHhhhccCCCCccccccCCCCceEEEeeHHHHHhh----hccccCCCceEEEEccccccCCCcc-
Q 042857 832 NVVEYHGCAKARAIIRQYEWHASDPDNLNKKTSSYKFNVLLTTYEMILAD----SSHLRGVPWEVLVVDEGHRLKNSGS- 906 (1404)
Q Consensus 832 ~Vvvy~G~~~~R~~ir~~E~~~~~~~~~~~~~~~~kfdVvITTYe~l~~d----~~~L~~i~w~lVIVDEAHrlKN~~S- 906 (1404)
+ ...|+... .....++|+|-|+++.- ...++.+ ..||+||.|++.+..-
T Consensus 368 g--LlTGDvqi----------------------nPeAsCLIMTTEILRsMLYrgadliRDv--E~VIFDEVHYiND~eRG 421 (1248)
T KOG0947|consen 368 G--LLTGDVQI----------------------NPEASCLIMTTEILRSMLYRGADLIRDV--EFVIFDEVHYINDVERG 421 (1248)
T ss_pred c--eeecceee----------------------CCCcceEeehHHHHHHHHhcccchhhcc--ceEEEeeeeeccccccc
Confidence 6 45564321 13557899999988763 3445554 4699999999966332
Q ss_pred HHHHHHhhccccc--EEEEeccC
Q 042857 907 KLFSLLNSFSFQH--RVLLTGTP 927 (1404)
Q Consensus 907 k~~~~L~~l~~~~--rLLLTGTP 927 (1404)
-.+..+--+-.+| .++||||-
T Consensus 422 vVWEEViIMlP~HV~~IlLSATV 444 (1248)
T KOG0947|consen 422 VVWEEVIIMLPRHVNFILLSATV 444 (1248)
T ss_pred ccceeeeeeccccceEEEEeccC
Confidence 1222222222233 48899993
No 146
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=98.65 E-value=7e-07 Score=115.88 Aligned_cols=157 Identities=21% Similarity=0.191 Sum_probs=105.4
Q ss_pred CCCCCCHHHHHHHHHHHHhhccCCcEEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEeCCCCh-HHHHHHHHHHCCC
Q 042857 752 KGGALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLSTM-PNWLAEFALWAPN 830 (1404)
Q Consensus 752 ~g~~L~pyQlegVnwL~~~~~~~~~~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP~Sll-~nW~rEf~kw~P~ 830 (1404)
-++.|-|+|.+++.-| ..+.+++++..+|.|||+++-.++......+ ..++-..|.-.+ .|=.++|..-+.+
T Consensus 116 ~~F~LD~fQ~~a~~~L----er~esVlV~ApTssGKTvVaeyAi~~al~~~---qrviYTsPIKALsNQKyrdl~~~fgd 188 (1041)
T COG4581 116 YPFELDPFQQEAIAIL----ERGESVLVCAPTSSGKTVVAEYAIALALRDG---QRVIYTSPIKALSNQKYRDLLAKFGD 188 (1041)
T ss_pred CCCCcCHHHHHHHHHH----hCCCcEEEEccCCCCcchHHHHHHHHHHHcC---CceEeccchhhhhhhHHHHHHHHhhh
Confidence 3578999999998755 4599999999999999999988887655432 237888897666 5667777765543
Q ss_pred C--cEEEEecchhHHHHHHHhhhccCCCCccccccCCCCceEEEeeHHHHHhh----hccccCCCceEEEEccccccCCC
Q 042857 831 L--NVVEYHGCAKARAIIRQYEWHASDPDNLNKKTSSYKFNVLLTTYEMILAD----SSHLRGVPWEVLVVDEGHRLKNS 904 (1404)
Q Consensus 831 l--~Vvvy~G~~~~R~~ir~~E~~~~~~~~~~~~~~~~kfdVvITTYe~l~~d----~~~L~~i~w~lVIVDEAHrlKN~ 904 (1404)
+ -+.++.|+.. -.....++++|-|.+++- ...+. +...||+||.|.+...
T Consensus 189 v~~~vGL~TGDv~----------------------IN~~A~clvMTTEILRnMlyrg~~~~~--~i~~ViFDEvHyi~D~ 244 (1041)
T COG4581 189 VADMVGLMTGDVS----------------------INPDAPCLVMTTEILRNMLYRGSESLR--DIEWVVFDEVHYIGDR 244 (1041)
T ss_pred hhhhccceeccee----------------------eCCCCceEEeeHHHHHHHhccCccccc--ccceEEEEeeeecccc
Confidence 3 2334444321 123556788887888763 23333 3456999999999764
Q ss_pred ccH-HH-HHHhhcccc-cEEEEeccCCCCChHHHHHHhhhhCCCCCCChhHHHHHhcc
Q 042857 905 GSK-LF-SLLNSFSFQ-HRVLLTGTPLQNNIGEMYNLLNFLQPASFPSLSSFEEKFND 959 (1404)
Q Consensus 905 ~Sk-~~-~~L~~l~~~-~rLLLTGTPlqNnl~EL~sLL~fL~P~~f~s~~~F~~~f~d 959 (1404)
.-- .. ..+..+... .-++||||- ++..+|..|+..
T Consensus 245 eRG~VWEE~Ii~lP~~v~~v~LSATv--------------------~N~~EF~~Wi~~ 282 (1041)
T COG4581 245 ERGVVWEEVIILLPDHVRFVFLSATV--------------------PNAEEFAEWIQR 282 (1041)
T ss_pred ccchhHHHHHHhcCCCCcEEEEeCCC--------------------CCHHHHHHHHHh
Confidence 322 22 233333333 568899993 566778888764
No 147
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=98.63 E-value=2.1e-06 Score=109.74 Aligned_cols=84 Identities=11% Similarity=0.128 Sum_probs=65.8
Q ss_pred hhhHHHHHHHHHHHHHHcCCeEEEEecchhHHHHHHHHHhhhcCCceEEEEeCCCCH-HHHHHHHHHHhcCCCceEEEee
Q 042857 1069 ASAKLTLLHSMLKVLYKEGHRVLIFSQMTKLLDILEDYLNIEFGPKTYERVDGSVSV-GDRQAAITRFNQDKSRFVFLLS 1147 (1404)
Q Consensus 1069 ~SgKl~~L~kLL~kl~~~G~KVLIFSq~~~~LDiLed~L~~~f~g~~y~rLdGs~s~-~eRq~~Id~Fn~~~s~~VfLLS 1147 (1404)
...|..++.+-+..+.+.|..|||-+..+..-+.|..+|... |+++..++..... +.-.++|.. + +..-.+-|+
T Consensus 406 ~~~K~~AI~~ei~~~~~~grPVLIgT~SIe~SE~ls~~L~~~--gi~h~vLNAk~~~~~~EA~IIA~--A-G~~G~VTIA 480 (870)
T CHL00122 406 ELSKWRAIADECLQMHQTGRPILIGTTTIEKSELLSQLLKEY--RLPHQLLNAKPENVRRESEIVAQ--A-GRKGSITIA 480 (870)
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEeeCCHHHHHHHHHHHHHc--CCccceeeCCCccchhHHHHHHh--c-CCCCcEEEe
Confidence 357888888888889999999999999999999999999987 8889899887433 333344444 2 333347889
Q ss_pred cccccccccc
Q 042857 1148 TRSCGLGINL 1157 (1404)
Q Consensus 1148 TrAgG~GINL 1157 (1404)
|..+|+|.|+
T Consensus 481 TNMAGRGTDI 490 (870)
T CHL00122 481 TNMAGRGTDI 490 (870)
T ss_pred ccccCCCcCe
Confidence 9999999664
No 148
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=98.58 E-value=4.4e-06 Score=110.83 Aligned_cols=140 Identities=19% Similarity=0.172 Sum_probs=89.9
Q ss_pred cCCcEEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEeCCCCh-HHHHHHHHHHCCCCcEEEEecchhHHHHHHHhhh
Q 042857 773 KSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLSTM-PNWLAEFALWAPNLNVVEYHGCAKARAIIRQYEW 851 (1404)
Q Consensus 773 ~~~~~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP~Sll-~nW~rEf~kw~P~l~Vvvy~G~~~~R~~ir~~E~ 851 (1404)
.+.+|++.+-.|+|||++++-+...+... .....++|||--.-| .|-..+|..+........ .........+..+
T Consensus 272 ~~~~G~IWHtqGSGKTlTm~~~A~~l~~~-~~~~~v~fvvDR~dLd~Q~~~~f~~~~~~~~~~~--~~~s~~~Lk~~l~- 347 (962)
T COG0610 272 DGKGGYIWHTQGSGKTLTMFKLARLLLEL-PKNPKVLFVVDRKDLDDQTSDEFQSFGKVAFNDP--KAESTSELKELLE- 347 (962)
T ss_pred cCCceEEEeecCCchHHHHHHHHHHHHhc-cCCCeEEEEechHHHHHHHHHHHHHHHHhhhhcc--cccCHHHHHHHHh-
Confidence 34679999999999999988777666655 444456777765544 899999999875443333 2222222222222
Q ss_pred ccCCCCccccccCCCCceEEEeeHHHHHhhhc----cccCCCceEEEEccccccCCCccHHHHHH-hhcccccEEEEecc
Q 042857 852 HASDPDNLNKKTSSYKFNVLLTTYEMILADSS----HLRGVPWEVLVVDEGHRLKNSGSKLFSLL-NSFSFQHRVLLTGT 926 (1404)
Q Consensus 852 ~~~~~~~~~~~~~~~kfdVvITTYe~l~~d~~----~L~~i~w~lVIVDEAHrlKN~~Sk~~~~L-~~l~~~~rLLLTGT 926 (1404)
...-.|+|||-+.|..... ....-+.-+||+|||||--. ..+.+.+ ..|....-+++|||
T Consensus 348 -------------~~~~~ii~TTIQKf~~~~~~~~~~~~~~~~ivvI~DEaHRSQ~--G~~~~~~~~~~~~a~~~gFTGT 412 (962)
T COG0610 348 -------------DGKGKIIVTTIQKFNKAVKEDELELLKRKNVVVIIDEAHRSQY--GELAKLLKKALKKAIFIGFTGT 412 (962)
T ss_pred -------------cCCCcEEEEEecccchhhhcccccccCCCcEEEEEechhhccc--cHHHHHHHHHhccceEEEeeCC
Confidence 1134699999888765432 22344567899999999753 2233333 33455677899999
Q ss_pred CCCCC
Q 042857 927 PLQNN 931 (1404)
Q Consensus 927 PlqNn 931 (1404)
|+.-.
T Consensus 413 Pi~~~ 417 (962)
T COG0610 413 PIFKE 417 (962)
T ss_pred ccccc
Confidence 98654
No 149
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=98.58 E-value=2.8e-05 Score=103.66 Aligned_cols=89 Identities=11% Similarity=0.096 Sum_probs=64.4
Q ss_pred CCCCCCCHHHHHHHHHHHHhhccCCcEEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEeCCCCh-HH-HHHH---HH
Q 042857 751 LKGGALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLSTM-PN-WLAE---FA 825 (1404)
Q Consensus 751 l~g~~L~pyQlegVnwL~~~~~~~~~~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP~Sll-~n-W~rE---f~ 825 (1404)
+.|.+.||-|.+-.+.+...+..+...++-..+|+|||+..+..+.... .....|++|.+++..+ .| +.++ +.
T Consensus 253 ~~~~e~R~~Q~~m~~~v~~~l~~~~~~~iEA~TGtGKTlaYLlpa~~~a--~~~~~~vvIsT~T~~LQ~Ql~~kDiP~L~ 330 (928)
T PRK08074 253 MPKYEKREGQQEMMKEVYTALRDSEHALIEAGTGTGKSLAYLLPAAYFA--KKKEEPVVISTYTIQLQQQLLEKDIPLLQ 330 (928)
T ss_pred CCCCcCCHHHHHHHHHHHHHHhcCCCEEEECCCCCchhHHHHHHHHHHh--hccCCeEEEEcCCHHHHHHHHHhhHHHHH
Confidence 3456899999999999999898888888888999999998876654433 2334688888887766 34 3444 34
Q ss_pred HHCC-CCcEEEEecchh
Q 042857 826 LWAP-NLNVVEYHGCAK 841 (1404)
Q Consensus 826 kw~P-~l~Vvvy~G~~~ 841 (1404)
+.+| ++++++..|...
T Consensus 331 ~~~~~~~~~~~lKGr~n 347 (928)
T PRK08074 331 KIFPFPVEAALLKGRSH 347 (928)
T ss_pred HHcCCCceEEEEEcccc
Confidence 4444 577777776543
No 150
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=98.57 E-value=2.7e-06 Score=111.44 Aligned_cols=85 Identities=16% Similarity=0.163 Sum_probs=62.0
Q ss_pred cCCCCCCCHHHHHHHHHHHHhhccCCcEEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEeCCCChH-HH-HHHHH--
Q 042857 750 ELKGGALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLSTMP-NW-LAEFA-- 825 (1404)
Q Consensus 750 ~l~g~~L~pyQlegVnwL~~~~~~~~~~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP~Sll~-nW-~rEf~-- 825 (1404)
.+.|.+.||-|.+-.+.+...+..+...++...+|+|||+..+..+.... ...+++|.+|+..+. |- ..++.
T Consensus 240 ~~~~~e~R~~Q~~ma~~V~~~l~~~~~~~~eA~tGtGKT~ayllp~l~~~----~~~~vvI~t~T~~Lq~Ql~~~~i~~l 315 (820)
T PRK07246 240 ALLGLEERPKQESFAKLVGEDFHDGPASFIEAQTGIGKTYGYLLPLLAQS----DQRQIIVSVPTKILQDQIMAEEVKAI 315 (820)
T ss_pred ccCCCccCHHHHHHHHHHHHHHhCCCcEEEECCCCCcHHHHHHHHHHHhc----CCCcEEEEeCcHHHHHHHHHHHHHHH
Confidence 34567899999999999999888888889999999999998776643321 245899999998774 33 34444
Q ss_pred -HHCCCCcEEEEecc
Q 042857 826 -LWAPNLNVVEYHGC 839 (1404)
Q Consensus 826 -kw~P~l~Vvvy~G~ 839 (1404)
+++ ++++....|.
T Consensus 316 ~~~~-~~~~~~~kg~ 329 (820)
T PRK07246 316 QEVF-HIDCHSLKGP 329 (820)
T ss_pred HHhc-CCcEEEEECC
Confidence 444 4566655554
No 151
>KOG4299 consensus PHD Zn-finger protein [General function prediction only]
Probab=98.55 E-value=2e-08 Score=121.77 Aligned_cols=50 Identities=44% Similarity=1.159 Sum_probs=44.9
Q ss_pred ccccccccCCCce---EEcCCCCCcccccccCCC--CCCCCCCCccCcccccccc
Q 042857 75 YYECVICDLGGNL---LCCDSCPRTYHLQCLDPP--LKRIPNGKWQCPKCTQKND 124 (1404)
Q Consensus 75 ~~~C~~C~~~g~l---l~Cd~C~~~~H~~Cl~Pp--l~~~P~g~W~C~~C~~~~~ 124 (1404)
.+||..|.+.|.. +|||+|+++||++|+.|| ...+|.|.|||+.|..+..
T Consensus 253 ~~fCsaCn~~~~F~~~i~CD~Cp~sFH~~CLePPl~~eniP~g~W~C~ec~~k~~ 307 (613)
T KOG4299|consen 253 EDFCSACNGSGLFNDIICCDGCPRSFHQTCLEPPLEPENIPPGSWFCPECKIKSV 307 (613)
T ss_pred HHHHHHhCCccccccceeecCCchHHHHhhcCCCCCcccCCCCccccCCCeeeee
Confidence 4489999998876 999999999999999999 5779999999999997643
No 152
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.49 E-value=9e-06 Score=105.54 Aligned_cols=72 Identities=19% Similarity=0.213 Sum_probs=57.2
Q ss_pred CCCHHHHHHHHHHHHhhccCCcEEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEeCC-CChHHHHHHHHH
Q 042857 755 ALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPL-STMPNWLAEFAL 826 (1404)
Q Consensus 755 ~L~pyQlegVnwL~~~~~~~~~~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP~-Sll~nW~rEf~k 826 (1404)
.+||.|.+.+..+...+..+.+++|-..+|+|||+.+|+.........+...+++..+.+ +.+.|-.+|+++
T Consensus 10 ~~y~~Q~~~m~~v~~~l~~~~~~llEsPTGtGKTlslL~~aL~~~~~~~~~~kIiy~sRThsQl~q~i~Elk~ 82 (705)
T TIGR00604 10 KIYPEQRSYMRDLKRSLDRGDEAILEMPSGTGKTISLLSLILAYQQEKPEVRKIIYASRTHSQLEQATEELRK 82 (705)
T ss_pred CCCHHHHHHHHHHHHHhccCCceEEeCCCCCCccHHHHHHHHHHHHhccccccEEEEcccchHHHHHHHHHHh
Confidence 469999999999999999999999999999999999887766654433322345555554 567899999998
No 153
>KOG1973 consensus Chromatin remodeling protein, contains PHD Zn-finger [Chromatin structure and dynamics]
Probab=98.45 E-value=1.2e-07 Score=108.85 Aligned_cols=48 Identities=38% Similarity=0.987 Sum_probs=41.4
Q ss_pred cccccccccccCCCceEEcCC--CC-CcccccccCCCCCCCCCCCccCcccccc
Q 042857 72 DGYYYECVICDLGGNLLCCDS--CP-RTYHLQCLDPPLKRIPNGKWQCPKCTQK 122 (1404)
Q Consensus 72 d~~~~~C~~C~~~g~ll~Cd~--C~-~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~ 122 (1404)
...+++|. |...|+|+.||. |+ .|||+.|++ |+..|.|.||||.|...
T Consensus 218 e~~yC~Cn-qvsyg~Mi~CDn~~C~~eWFH~~CVG--L~~~PkgkWyC~~C~~~ 268 (274)
T KOG1973|consen 218 EPTYCICN-QVSYGKMIGCDNPGCPIEWFHFTCVG--LKTKPKGKWYCPRCKAE 268 (274)
T ss_pred CCEEEEec-ccccccccccCCCCCCcceEEEeccc--cccCCCCcccchhhhhh
Confidence 34444566 777899999997 99 999999999 99999999999999865
No 154
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=98.45 E-value=9.7e-06 Score=103.69 Aligned_cols=84 Identities=14% Similarity=0.174 Sum_probs=65.5
Q ss_pred hhhHHHHHHHHHHHHHHcCCeEEEEecchhHHHHHHHHHhhhcCCceEEEEeCCCCHHHH-HHHHHHHhcCCCceEEEee
Q 042857 1069 ASAKLTLLHSMLKVLYKEGHRVLIFSQMTKLLDILEDYLNIEFGPKTYERVDGSVSVGDR-QAAITRFNQDKSRFVFLLS 1147 (1404)
Q Consensus 1069 ~SgKl~~L~kLL~kl~~~G~KVLIFSq~~~~LDiLed~L~~~f~g~~y~rLdGs~s~~eR-q~~Id~Fn~~~s~~VfLLS 1147 (1404)
...|+.++.+-+..+.+.|..|||-+..+..-+.|..+|... |+.+..++..-...++ .++|.. + +..-.+-|+
T Consensus 421 ~~~K~~Ai~~ei~~~~~~GrPVLIgT~SVe~SE~ls~~L~~~--gi~h~vLNAk~~~~~~EA~IIa~--A-G~~GaVTIA 495 (939)
T PRK12902 421 EIAKWRAVANETAEMHKQGRPVLVGTTSVEKSELLSALLQEQ--GIPHNLLNAKPENVEREAEIVAQ--A-GRKGAVTIA 495 (939)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEeeCCHHHHHHHHHHHHHc--CCchheeeCCCcchHhHHHHHHh--c-CCCCcEEEe
Confidence 468999999999999999999999999999999999999987 7888889886333233 344444 2 222346789
Q ss_pred cccccccccc
Q 042857 1148 TRSCGLGINL 1157 (1404)
Q Consensus 1148 TrAgG~GINL 1157 (1404)
|..+|+|-++
T Consensus 496 TNMAGRGTDI 505 (939)
T PRK12902 496 TNMAGRGTDI 505 (939)
T ss_pred ccCCCCCcCE
Confidence 9999999654
No 155
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=98.42 E-value=1.2e-05 Score=103.91 Aligned_cols=119 Identities=16% Similarity=0.183 Sum_probs=95.1
Q ss_pred hhhHHHHHHHHHHHHHHcCCeEEEEecchhHHHHHHHHHhhhcCCceEEEEeCCCCHHHHHHHHHHHhcCCCceEEEeec
Q 042857 1069 ASAKLTLLHSMLKVLYKEGHRVLIFSQMTKLLDILEDYLNIEFGPKTYERVDGSVSVGDRQAAITRFNQDKSRFVFLLST 1148 (1404)
Q Consensus 1069 ~SgKl~~L~kLL~kl~~~G~KVLIFSq~~~~LDiLed~L~~~f~g~~y~rLdGs~s~~eRq~~Id~Fn~~~s~~VfLLST 1148 (1404)
...|+.++.+-+..+.+.|..|||-+..+..-++|..+|..+ |+++..|+.... ++++.|=.- + +..-.+-|+|
T Consensus 610 ~~eK~~Aii~ei~~~~~~GrPVLVGT~SVe~SE~lS~~L~~~--gI~H~VLNAK~h--~~EAeIVA~-A-G~~GaVTIAT 683 (1112)
T PRK12901 610 KREKYNAVIEEITELSEAGRPVLVGTTSVEISELLSRMLKMR--KIPHNVLNAKLH--QKEAEIVAE-A-GQPGTVTIAT 683 (1112)
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEeCcHHHHHHHHHHHHHc--CCcHHHhhccch--hhHHHHHHh-c-CCCCcEEEec
Confidence 468999999999999999999999999999999999999987 788877777533 343333221 1 3233478899
Q ss_pred cccccccccc--------CCCEEEEEcCCCCHhHHHHHHHhhhccCCCCcEEE
Q 042857 1149 RSCGLGINLA--------TADTVIIYDSDFNPHADIQAMNRAHRIGQSKRLLV 1193 (1404)
Q Consensus 1149 rAgG~GINL~--------~AdtVIi~DsdWNP~~d~QAigRahRiGQ~k~V~V 1193 (1404)
..+|+|.++. +-=+||.-..+-+...+.|..||++|.|.......
T Consensus 684 NMAGRGTDIkLg~~V~e~GGL~VIgTerheSrRID~QLrGRaGRQGDPGsS~f 736 (1112)
T PRK12901 684 NMAGRGTDIKLSPEVKAAGGLAIIGTERHESRRVDRQLRGRAGRQGDPGSSQF 736 (1112)
T ss_pred cCcCCCcCcccchhhHHcCCCEEEEccCCCcHHHHHHHhcccccCCCCCcceE
Confidence 9999998875 23478888999999999999999999998766543
No 156
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=98.41 E-value=2.1e-05 Score=101.36 Aligned_cols=105 Identities=19% Similarity=0.219 Sum_probs=76.2
Q ss_pred HHcCCeEEEEecchhHHHHHHHHHhhhcCCceEEEEeCCCCHHHHHHHHHHHhcCCCceEEEeecccccccccccC--CC
Q 042857 1084 YKEGHRVLIFSQMTKLLDILEDYLNIEFGPKTYERVDGSVSVGDRQAAITRFNQDKSRFVFLLSTRSCGLGINLAT--AD 1161 (1404)
Q Consensus 1084 ~~~G~KVLIFSq~~~~LDiLed~L~~~f~g~~y~rLdGs~s~~eRq~~Id~Fn~~~s~~VfLLSTrAgG~GINL~~--Ad 1161 (1404)
...+.++|||+..-.++..+.+++...... ......|..+ +.+.++.|.+.+.. .||+.+....+|||+.. ..
T Consensus 476 ~~~~~~~lvlF~Sy~~l~~~~~~~~~~~~~-~~v~~q~~~~---~~~~l~~f~~~~~~-~~lv~~gsf~EGVD~~g~~l~ 550 (654)
T COG1199 476 KASPGGVLVLFPSYEYLKRVAERLKDERST-LPVLTQGEDE---REELLEKFKASGEG-LILVGGGSFWEGVDFPGDALR 550 (654)
T ss_pred hhcCCCEEEEeccHHHHHHHHHHHhhcCcc-ceeeecCCCc---HHHHHHHHHHhcCC-eEEEeeccccCcccCCCCCee
Confidence 344558999999999999999998864211 2334455443 44899999987764 58999999999999976 58
Q ss_pred EEEEEcCCCC-Hh-----------------------------HHHHHHHhhhccCCCCcEEE
Q 042857 1162 TVIIYDSDFN-PH-----------------------------ADIQAMNRAHRIGQSKRLLV 1193 (1404)
Q Consensus 1162 tVIi~DsdWN-P~-----------------------------~d~QAigRahRiGQ~k~V~V 1193 (1404)
.|||.-.||- |. ...|++||+.|--+-+-|.|
T Consensus 551 ~vvI~~lPfp~p~dp~~~~r~~~~~~~g~~~f~~~~l~~A~~~l~QavGRlIR~~~D~G~iv 612 (654)
T COG1199 551 LVVIVGLPFPNPDDPLLKARLEFLKRLGGDPFEEFYLPPAVIKLRQAVGRLIRSEDDRGVIV 612 (654)
T ss_pred EEEEEecCCCCCCCHHHHHHHHHHHHhcCCCceEeehHHHHHHHHHhhccccccCCCceEEE
Confidence 8999988874 32 34699999999555444443
No 157
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=98.41 E-value=7.5e-08 Score=82.57 Aligned_cols=46 Identities=48% Similarity=1.245 Sum_probs=38.8
Q ss_pred ccccccC---CCceEEcCCCCCcccccccCCCCC--CCCCCCccCcccccc
Q 042857 77 ECVICDL---GGNLLCCDSCPRTYHLQCLDPPLK--RIPNGKWQCPKCTQK 122 (1404)
Q Consensus 77 ~C~~C~~---~g~ll~Cd~C~~~~H~~Cl~Ppl~--~~P~g~W~C~~C~~~ 122 (1404)
+|.+|+. .++||.||.|.++||+.|++|+.. ..+.+.|+|+.|..+
T Consensus 1 ~C~vC~~~~~~~~~i~C~~C~~~~H~~C~~~~~~~~~~~~~~w~C~~C~~~ 51 (51)
T PF00628_consen 1 YCPVCGQSDDDGDMIQCDSCNRWYHQECVGPPEKAEEIPSGDWYCPNCRPK 51 (51)
T ss_dssp EBTTTTSSCTTSSEEEBSTTSCEEETTTSTSSHSHHSHHSSSBSSHHHHHC
T ss_pred eCcCCCCcCCCCCeEEcCCCChhhCcccCCCChhhccCCCCcEECcCCcCc
Confidence 4778877 456999999999999999999977 555679999999753
No 158
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=98.37 E-value=1.3e-07 Score=115.09 Aligned_cols=46 Identities=43% Similarity=1.071 Sum_probs=41.0
Q ss_pred ccccccCCCc---eEEcCCCCCc-ccccccCCCCCCCCCCCccCcccccc
Q 042857 77 ECVICDLGGN---LLCCDSCPRT-YHLQCLDPPLKRIPNGKWQCPKCTQK 122 (1404)
Q Consensus 77 ~C~~C~~~g~---ll~Cd~C~~~-~H~~Cl~Ppl~~~P~g~W~C~~C~~~ 122 (1404)
-|.+|..... ||+||.|+.+ ||+|||+|+|..+|.+.|||+.|..-
T Consensus 217 ~C~IC~~~DpEdVLLLCDsCN~~~YH~YCLDPdl~eiP~~eWYC~NC~dL 266 (1134)
T KOG0825|consen 217 KCDICTVHDPEDVLLLCDSCNKVYYHVYCLDPDLSESPVNEWYCTNCSLL 266 (1134)
T ss_pred cceeeccCChHHhheeecccccceeeccccCcccccccccceecCcchhh
Confidence 4888877543 9999999988 99999999999999999999999854
No 159
>cd04718 BAH_plant_2 BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=98.32 E-value=2.8e-07 Score=95.06 Aligned_cols=47 Identities=38% Similarity=0.862 Sum_probs=37.9
Q ss_pred cccccccCCCCCCCCCCCccCccccccccccCCCcccchhHHhhccc
Q 042857 96 TYHLQCLDPPLKRIPNGKWQCPKCTQKNDQLKPISNLDSISKRARSK 142 (1404)
Q Consensus 96 ~~H~~Cl~Ppl~~~P~g~W~C~~C~~~~~~~~~~~~~~~~~~~~r~k 142 (1404)
+||++||+|||+.+|+|+|+||.|..+..........+...+..+.+
T Consensus 1 g~H~~CL~Ppl~~~P~g~W~Cp~C~~~~~~~~~~~~~~~~~~~~~~~ 47 (148)
T cd04718 1 GFHLCCLRPPLKEVPEGDWICPFCEVEKSGQSAMPQLPPTSRSACEK 47 (148)
T ss_pred CcccccCCCCCCCCCCCCcCCCCCcCCCCCCcccccCCCcchhhhhh
Confidence 69999999999999999999999998877766666555555544444
No 160
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=98.30 E-value=5.5e-05 Score=93.46 Aligned_cols=111 Identities=17% Similarity=0.249 Sum_probs=76.0
Q ss_pred eEEEEecchhHHHHHHHHHhhhcC----C--ceEEEEeCCCCHHHHHHHHHHHhcCC-CceEEEeecccccccccccCCC
Q 042857 1089 RVLIFSQMTKLLDILEDYLNIEFG----P--KTYERVDGSVSVGDRQAAITRFNQDK-SRFVFLLSTRSCGLGINLATAD 1161 (1404)
Q Consensus 1089 KVLIFSq~~~~LDiLed~L~~~f~----g--~~y~rLdGs~s~~eRq~~Id~Fn~~~-s~~VfLLSTrAgG~GINL~~Ad 1161 (1404)
-+|||-.-...++.....|....+ + .-+.-++|+++.++..++ |...+ +..-+++||+.+...|.+...-
T Consensus 260 DILvFLtGqeEIe~~~~~l~e~~~~~~~~~~~~~lply~aL~~e~Q~rv---F~p~p~g~RKvIlsTNIAETSlTI~GI~ 336 (674)
T KOG0922|consen 260 DILVFLTGQEEIEAACELLRERAKSLPEDCPELILPLYGALPSEEQSRV---FDPAPPGKRKVILSTNIAETSLTIDGIR 336 (674)
T ss_pred CEEEEeCCHHHHHHHHHHHHHHhhhccccCcceeeeecccCCHHHhhcc---ccCCCCCcceEEEEcceeeeeEEecceE
Confidence 588887777665555555543311 1 124568999998876544 65443 5566889999999999999988
Q ss_pred EEEEEc----CCCCHh-----------HHHHHHHhhhccCCCCcEEEEEEeeCCCH
Q 042857 1162 TVIIYD----SDFNPH-----------ADIQAMNRAHRIGQSKRLLVYRLVVRASV 1202 (1404)
Q Consensus 1162 tVIi~D----sdWNP~-----------~d~QAigRahRiGQ~k~V~VYrLvt~~Tv 1202 (1404)
+||=-. ..|||. .-.||.-|++|-|.+.+..+|||+++.-+
T Consensus 337 YVVDsG~vK~~~y~p~~g~~~L~v~~ISkasA~QRaGRAGRt~pGkcyRLYte~~~ 392 (674)
T KOG0922|consen 337 YVVDSGFVKQKKYNPRTGLDSLIVVPISKASANQRAGRAGRTGPGKCYRLYTESAY 392 (674)
T ss_pred EEEcCCceEEEeeccccCccceeEEechHHHHhhhcccCCCCCCceEEEeeeHHHH
Confidence 775211 124442 44567777777777889999999998776
No 161
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=98.27 E-value=0.00025 Score=90.09 Aligned_cols=80 Identities=14% Similarity=0.121 Sum_probs=60.5
Q ss_pred HHHHHHHHHHhhccCCcEEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEeCCCCh-HHHHHHHHHHC-----CCCcE
Q 042857 760 QLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLSTM-PNWLAEFALWA-----PNLNV 833 (1404)
Q Consensus 760 QlegVnwL~~~~~~~~~~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP~Sll-~nW~rEf~kw~-----P~l~V 833 (1404)
|.+-+.++...+.++...++-..+|.|||+..+..+...... ....++||++|+..+ .|+.+++..+. ..+++
T Consensus 2 Q~~~~~~i~~al~~~~~lliEA~TGtGKTlAYLlpal~~~~~-~~~~rvlIstpT~~Lq~Ql~~~l~~l~~~~l~~~i~~ 80 (636)
T TIGR03117 2 QALFYLNCLTSLRQKRIGMLEASTGVGKTLAMIMAALTMLKE-RPDQKIAIAVPTLALMGQLWSELERLTAEGLAGPVQA 80 (636)
T ss_pred HHHHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHHHHHh-ccCceEEEECCcHHHHHHHHHHHHHHHHhhcCCCeeE
Confidence 778888888888888889999999999999888776544332 124689999998755 78888877654 25667
Q ss_pred EEEecch
Q 042857 834 VEYHGCA 840 (1404)
Q Consensus 834 vvy~G~~ 840 (1404)
++..|..
T Consensus 81 ~~lkGr~ 87 (636)
T TIGR03117 81 GFFPGSQ 87 (636)
T ss_pred EEEECCc
Confidence 7766643
No 162
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=98.21 E-value=0.00023 Score=90.36 Aligned_cols=162 Identities=17% Similarity=0.120 Sum_probs=105.0
Q ss_pred CCHHHHHHHHHHHHhhccCCcEEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEeCCC-ChHHHHHHHHHHC--CCCc
Q 042857 756 LFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLS-TMPNWLAEFALWA--PNLN 832 (1404)
Q Consensus 756 L~pyQlegVnwL~~~~~~~~~~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP~S-ll~nW~rEf~kw~--P~l~ 832 (1404)
.-.+|.+-+ .....+..++|...+-.|||...-.++...+++.. .+-++-|+|.- ++.|-..++...+ +.+.
T Consensus 512 Pd~WQ~elL----DsvDr~eSavIVAPTSaGKTfisfY~iEKVLResD-~~VVIyvaPtKaLVnQvsa~VyaRF~~~t~~ 586 (1330)
T KOG0949|consen 512 PDEWQRELL----DSVDRNESAVIVAPTSAGKTFISFYAIEKVLRESD-SDVVIYVAPTKALVNQVSANVYARFDTKTFL 586 (1330)
T ss_pred CcHHHHHHh----hhhhcccceEEEeeccCCceeccHHHHHHHHhhcC-CCEEEEecchHHHhhhhhHHHHHhhccCccc
Confidence 334676644 44466888999999999999999888887776544 44788889975 4566666665433 3332
Q ss_pred EEEEecchhHHHHHHHhhhccCCCCccccccCCCCceEEEeeHHHHHhhhcc----ccC-CCceEEEEccccccCCCc-c
Q 042857 833 VVEYHGCAKARAIIRQYEWHASDPDNLNKKTSSYKFNVLLTTYEMILADSSH----LRG-VPWEVLVVDEGHRLKNSG-S 906 (1404)
Q Consensus 833 Vvvy~G~~~~R~~ir~~E~~~~~~~~~~~~~~~~kfdVvITTYe~l~~d~~~----L~~-i~w~lVIVDEAHrlKN~~-S 906 (1404)
. |...--...++|.. ....++|+||-++.+..-.-. ... -+..++|+||.|.+.|.. +
T Consensus 587 r----g~sl~g~ltqEYsi------------np~nCQVLITvPecleslLlspp~~q~~cerIRyiIfDEVH~iG~~ed~ 650 (1330)
T KOG0949|consen 587 R----GVSLLGDLTQEYSI------------NPWNCQVLITVPECLESLLLSPPHHQKFCERIRYIIFDEVHLIGNEEDG 650 (1330)
T ss_pred c----chhhHhhhhHHhcC------------CchhceEEEEchHHHHHHhcCchhhhhhhhcceEEEechhhhccccccc
Confidence 2 21122233344432 234789999999887653211 111 135799999999998854 4
Q ss_pred HHHHHHhhcccccEEEEeccCCCCChHHHHHHhh
Q 042857 907 KLFSLLNSFSFQHRVLLTGTPLQNNIGEMYNLLN 940 (1404)
Q Consensus 907 k~~~~L~~l~~~~rLLLTGTPlqNnl~EL~sLL~ 940 (1404)
.+...+-.+..-.-|+|+|| ++|+..++--|+
T Consensus 651 l~~Eqll~li~CP~L~LSAT--igN~~l~qkWln 682 (1330)
T KOG0949|consen 651 LLWEQLLLLIPCPFLVLSAT--IGNPNLFQKWLN 682 (1330)
T ss_pred hHHHHHHHhcCCCeeEEecc--cCCHHHHHHHHH
Confidence 55555555555567889999 477777766665
No 163
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=98.17 E-value=0.00013 Score=94.43 Aligned_cols=131 Identities=20% Similarity=0.314 Sum_probs=89.9
Q ss_pred hHHHHHHHHHHHHHHc--CCeEEEEecchhHHHHHHHHHhhh--cCC---ceEEEEeCCCCHHHHHHHHHHHhcCC-Cce
Q 042857 1071 AKLTLLHSMLKVLYKE--GHRVLIFSQMTKLLDILEDYLNIE--FGP---KTYERVDGSVSVGDRQAAITRFNQDK-SRF 1142 (1404)
Q Consensus 1071 gKl~~L~kLL~kl~~~--G~KVLIFSq~~~~LDiLed~L~~~--f~g---~~y~rLdGs~s~~eRq~~Id~Fn~~~-s~~ 1142 (1404)
-...++..++..+.+. ...||||-.-...+..+...|... |.+ +-...+|++++..+.+.+ |+.+. +..
T Consensus 395 id~~Li~~li~~I~~~~~~GaILVFLPG~~eI~~~~~~L~~~~~f~~~~~~~ilplHs~~~s~eQ~~V---F~~pp~g~R 471 (924)
T KOG0920|consen 395 IDYDLIEDLIEYIDEREFEGAILVFLPGWEEILQLKELLEVNLPFADSLKFAILPLHSSIPSEEQQAV---FKRPPKGTR 471 (924)
T ss_pred ccHHHHHHHHHhcccCCCCceEEEEcCCHHHHHHHHHHhhhccccccccceEEEeccccCChHHHHHh---cCCCCCCcc
Confidence 3445566666655544 358999999887777776666532 222 556778999999887776 66544 345
Q ss_pred EEEeecccccccccccCCCEEE--------EEcCC---------C-CHhHHHHHHHhhhccCCCCcEEEEEEeeCCCHHH
Q 042857 1143 VFLLSTRSCGLGINLATADTVI--------IYDSD---------F-NPHADIQAMNRAHRIGQSKRLLVYRLVVRASVEE 1204 (1404)
Q Consensus 1143 VfLLSTrAgG~GINL~~AdtVI--------i~Dsd---------W-NP~~d~QAigRahRiGQ~k~V~VYrLvt~~TvEE 1204 (1404)
-++++|..+..+|.+..+-+|| .||+- | .-++-.||.|||+|. .+=.+|+|+++.-++-
T Consensus 472 KIIlaTNIAETSITIdDVvyVIDsG~~Ke~~yD~~~~~s~l~~~wvSkAna~QR~GRAGRv---~~G~cy~L~~~~~~~~ 548 (924)
T KOG0920|consen 472 KIILATNIAETSITIDDVVYVIDSGLVKEKSYDPERKVSCLLLSWVSKANAKQRRGRAGRV---RPGICYHLYTRSRYEK 548 (924)
T ss_pred hhhhhhhhHhhcccccCeEEEEecCeeeeeeecccCCcchhheeeccccchHHhcccccCc---cCCeeEEeechhhhhh
Confidence 6899999999999998776665 34432 2 233556888888875 4567899999876655
Q ss_pred HHH
Q 042857 1205 RIL 1207 (1404)
Q Consensus 1205 ~Il 1207 (1404)
.+.
T Consensus 549 ~~~ 551 (924)
T KOG0920|consen 549 LML 551 (924)
T ss_pred ccc
Confidence 443
No 164
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=98.15 E-value=2.3e-05 Score=101.89 Aligned_cols=144 Identities=21% Similarity=0.312 Sum_probs=93.4
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEeCCCChH-HHH---------HHHHHHCCC--CcEEEEecchh-
Q 042857 775 KNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLSTMP-NWL---------AEFALWAPN--LNVVEYHGCAK- 841 (1404)
Q Consensus 775 ~~~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP~Sll~-nW~---------rEf~kw~P~--l~Vvvy~G~~~- 841 (1404)
.+..+..++|.|||.+++..|.+|....+. ..||||||...+. ... .-|...+.+ +...+|.+...
T Consensus 60 ~n~~~~M~TGtGKT~~~~~~i~~l~~~~~~-~~fii~vp~~aI~egv~~~l~s~~~k~hF~~~y~~~~~~~~~~~S~k~~ 138 (986)
T PRK15483 60 ANIDIKMETGTGKTYVYTRLMYELHQKYGL-FKFIIVVPTPAIKEGTRNFIQSDYAKQHFSQFYENTRIELYVINAGDKK 138 (986)
T ss_pred ceEEEEeCCCCCHHHHHHHHHHHHHHHcCC-cEEEEEeCCHHHHHHHHHHhhHHHHHHHHHHHcCCceeEEEEEecCccc
Confidence 367899999999999999999999876554 4799999986552 222 113332332 45556654331
Q ss_pred --H----HHHHHHhhhccCCCCccccccCCCCceEEEeeHHHHHhhhc--c------ccC--CCc-------eEEEEccc
Q 042857 842 --A----RAIIRQYEWHASDPDNLNKKTSSYKFNVLLTTYEMILADSS--H------LRG--VPW-------EVLVVDEG 898 (1404)
Q Consensus 842 --~----R~~ir~~E~~~~~~~~~~~~~~~~kfdVvITTYe~l~~d~~--~------L~~--i~w-------~lVIVDEA 898 (1404)
. -..++.+.-.. .......+|+|+|-+++..+.. . +.. .+| -+||+||+
T Consensus 139 k~gr~~~~~~i~~Fa~~~--------~~~~~~I~Ilv~niqa~n~~~~~~~~~D~~l~~g~~~p~~~i~~~~PivIiDEP 210 (986)
T PRK15483 139 KSGRKNFPAQLSNFVKAS--------RQNSNTIHVLLINAGMLNSASMTRDDYDQTLLGGFTSPVDALAATRPVVIIDEP 210 (986)
T ss_pred ccccccChHHHHHHHhcc--------ccCCCceEEEEEehHHhcccccccchhhhhhccCCCChHHHHHhCCCEEEEECC
Confidence 1 12233321100 0112357899999999876421 1 111 233 38999999
Q ss_pred cccCCCccHHHHHHhhcccccEEEEeccCC
Q 042857 899 HRLKNSGSKLFSLLNSFSFQHRVLLTGTPL 928 (1404)
Q Consensus 899 HrlKN~~Sk~~~~L~~l~~~~rLLLTGTPl 928 (1404)
|++.. ..+...++..++..+.|..|||--
T Consensus 211 h~~~~-~~k~~~~i~~lnpl~~lrysAT~~ 239 (986)
T PRK15483 211 HRFPR-DNKFYQAIEALKPQMIIRFGATFP 239 (986)
T ss_pred CCCCc-chHHHHHHHhcCcccEEEEeeecC
Confidence 99965 345678889999999999999964
No 165
>PRK14873 primosome assembly protein PriA; Provisional
Probab=98.15 E-value=0.00026 Score=90.73 Aligned_cols=126 Identities=12% Similarity=-0.031 Sum_probs=86.2
Q ss_pred CCchHHHHHHHHHHHHHhhccCCCcEEEEeCCC-ChHHHHHHHHHHCCCCcEEEEecchhHHHHHHHhhhccCCCCcccc
Q 042857 783 MGLGKTVSACAFISSLYCEFKAKLPCLVLVPLS-TMPNWLAEFALWAPNLNVVEYHGCAKARAIIRQYEWHASDPDNLNK 861 (1404)
Q Consensus 783 MGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP~S-ll~nW~rEf~kw~P~l~Vvvy~G~~~~R~~ir~~E~~~~~~~~~~~ 861 (1404)
.|.|||-..+.++...+..+ +.+||++|.- +..|+...|+..+++..+++||+.-...+..+.+.-
T Consensus 169 ~GSGKTevyl~~i~~~l~~G---k~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~---------- 235 (665)
T PRK14873 169 PGEDWARRLAAAAAATLRAG---RGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLA---------- 235 (665)
T ss_pred CCCcHHHHHHHHHHHHHHcC---CeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHH----------
Confidence 39999999999998877543 3589999985 669999999999976789999987666555444421
Q ss_pred ccCCCCceEEEeeHHHHHhhhccccCCCceEEEEccccc--cCCCccHHH--H---HHh-hcccccEEEEeccC
Q 042857 862 KTSSYKFNVLLTTYEMILADSSHLRGVPWEVLVVDEGHR--LKNSGSKLF--S---LLN-SFSFQHRVLLTGTP 927 (1404)
Q Consensus 862 ~~~~~kfdVvITTYe~l~~d~~~L~~i~w~lVIVDEAHr--lKN~~Sk~~--~---~L~-~l~~~~rLLLTGTP 927 (1404)
...+...|||.|...+.. ---+.++|||||-|. +|...+..+ + .++ ....-..||.|+||
T Consensus 236 -~~~G~~~IViGtRSAvFa-----P~~~LgLIIvdEEhd~sykq~~~p~yhaRdvA~~Ra~~~~~~lvLgSaTP 303 (665)
T PRK14873 236 -VLRGQARVVVGTRSAVFA-----PVEDLGLVAIWDDGDDLLAEPRAPYPHAREVALLRAHQHGCALLIGGHAR 303 (665)
T ss_pred -HhCCCCcEEEEcceeEEe-----ccCCCCEEEEEcCCchhhcCCCCCCccHHHHHHHHHHHcCCcEEEECCCC
Confidence 123467899999876642 223567999999987 344332221 1 111 22233457779999
No 166
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=98.14 E-value=1.6e-05 Score=98.05 Aligned_cols=153 Identities=22% Similarity=0.283 Sum_probs=100.9
Q ss_pred CCCCHHHHHHHHHHHHhhccCCcEEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEeCCCChH-HHHHHHHHHCCCCc
Q 042857 754 GALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLSTMP-NWLAEFALWAPNLN 832 (1404)
Q Consensus 754 ~~L~pyQlegVnwL~~~~~~~~~~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP~Sll~-nW~rEf~kw~P~l~ 832 (1404)
.+|-|+|..++. +..++..+++..-+..|||++|-.+|+.-++. +.+++--.|--.|. |=.|||..=|.++-
T Consensus 128 F~LDpFQ~~aI~----Cidr~eSVLVSAHTSAGKTVVAeYAIA~sLr~---kQRVIYTSPIKALSNQKYREl~~EF~DVG 200 (1041)
T KOG0948|consen 128 FTLDPFQSTAIK----CIDRGESVLVSAHTSAGKTVVAEYAIAMSLRE---KQRVIYTSPIKALSNQKYRELLEEFKDVG 200 (1041)
T ss_pred cccCchHhhhhh----hhcCCceEEEEeecCCCcchHHHHHHHHHHHh---cCeEEeeChhhhhcchhHHHHHHHhcccc
Confidence 468899998874 66779999999999999999987776655433 33577777877664 55777765554432
Q ss_pred EEEEecchhHHHHHHHhhhccCCCCccccccCCCCceEEEeeHHHHHhh----hccccCCCceEEEEccccccCCCccHH
Q 042857 833 VVEYHGCAKARAIIRQYEWHASDPDNLNKKTSSYKFNVLLTTYEMILAD----SSHLRGVPWEVLVVDEGHRLKNSGSKL 908 (1404)
Q Consensus 833 Vvvy~G~~~~R~~ir~~E~~~~~~~~~~~~~~~~kfdVvITTYe~l~~d----~~~L~~i~w~lVIVDEAHrlKN~~Sk~ 908 (1404)
...|+. +-......+|+|-++++.- ...++.+.| ||+||.|+++...--.
T Consensus 201 --LMTGDV----------------------TInP~ASCLVMTTEILRsMLYRGSEvmrEVaW--VIFDEIHYMRDkERGV 254 (1041)
T KOG0948|consen 201 --LMTGDV----------------------TINPDASCLVMTTEILRSMLYRGSEVMREVAW--VIFDEIHYMRDKERGV 254 (1041)
T ss_pred --eeecce----------------------eeCCCCceeeeHHHHHHHHHhccchHhheeee--EEeeeehhccccccce
Confidence 233321 1123556889999888753 455666666 9999999998743211
Q ss_pred -H-HHHhhcc-cccEEEEeccCCCCChHHHHHHhhhhCCCCCCChhHHHHHhcc
Q 042857 909 -F-SLLNSFS-FQHRVLLTGTPLQNNIGEMYNLLNFLQPASFPSLSSFEEKFND 959 (1404)
Q Consensus 909 -~-~~L~~l~-~~~rLLLTGTPlqNnl~EL~sLL~fL~P~~f~s~~~F~~~f~d 959 (1404)
+ ..+--+. .-+-++||||- ++..+|.+|.+.
T Consensus 255 VWEETIIllP~~vr~VFLSATi--------------------PNA~qFAeWI~~ 288 (1041)
T KOG0948|consen 255 VWEETIILLPDNVRFVFLSATI--------------------PNARQFAEWICH 288 (1041)
T ss_pred eeeeeEEeccccceEEEEeccC--------------------CCHHHHHHHHHH
Confidence 1 1111222 33447799983 466778887754
No 167
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=98.06 E-value=9.3e-06 Score=94.56 Aligned_cols=97 Identities=19% Similarity=0.251 Sum_probs=86.9
Q ss_pred CCeEEEEecchhHHHHHHHHHhhhcC-CceEEEEeCCCCHHHHHHHHHHHhcCCCceEEEeecccccccccccCCCEEEE
Q 042857 1087 GHRVLIFSQMTKLLDILEDYLNIEFG-PKTYERVDGSVSVGDRQAAITRFNQDKSRFVFLLSTRSCGLGINLATADTVII 1165 (1404)
Q Consensus 1087 G~KVLIFSq~~~~LDiLed~L~~~f~-g~~y~rLdGs~s~~eRq~~Id~Fn~~~s~~VfLLSTrAgG~GINL~~AdtVIi 1165 (1404)
-.|.||||....-.|-|+.|+..+.+ .+.+..++|...+.+|.+-++.|....- -|||+|.++.+||+++..-.+|.
T Consensus 505 mdkaiifcrtk~dcDnLer~~~qkgg~~~scvclhgDrkP~Erk~nle~Fkk~dv--kflictdvaargldi~g~p~~in 582 (725)
T KOG0349|consen 505 MDKAIIFCRTKQDCDNLERMMNQKGGKHYSCVCLHGDRKPDERKANLESFKKFDV--KFLICTDVAARGLDITGLPFMIN 582 (725)
T ss_pred cCceEEEEeccccchHHHHHHHHcCCccceeEEEecCCChhHHHHHHHhhhhcCe--EEEEEehhhhccccccCCceEEE
Confidence 35899999999999999999998733 4677889999999999999999975544 49999999999999999999999
Q ss_pred EcCCCCHhHHHHHHHhhhcc
Q 042857 1166 YDSDFNPHADIQAMNRAHRI 1185 (1404)
Q Consensus 1166 ~DsdWNP~~d~QAigRahRi 1185 (1404)
...+-.-++|.+||||++|.
T Consensus 583 vtlpd~k~nyvhrigrvgra 602 (725)
T KOG0349|consen 583 VTLPDDKTNYVHRIGRVGRA 602 (725)
T ss_pred EecCcccchhhhhhhccchh
Confidence 99999999999999988874
No 168
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=98.03 E-value=0.00018 Score=93.23 Aligned_cols=92 Identities=18% Similarity=0.253 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHHcCCeEEEEecchhHHHHHHHHHhhhcCCceEEEEeCCCCHHHHHHHHHHHhcC--CCceEEEeecccc
Q 042857 1074 TLLHSMLKVLYKEGHRVLIFSQMTKLLDILEDYLNIEFGPKTYERVDGSVSVGDRQAAITRFNQD--KSRFVFLLSTRSC 1151 (1404)
Q Consensus 1074 ~~L~kLL~kl~~~G~KVLIFSq~~~~LDiLed~L~~~f~g~~y~rLdGs~s~~eRq~~Id~Fn~~--~s~~VfLLSTrAg 1151 (1404)
..+.+.|..+...+.++|||...-.+++.+..+|.... ++. ..+.|. ..|.++++.|.+. .....+|+.+...
T Consensus 521 ~~~~~~i~~l~~~~gg~LVlFtSy~~l~~v~~~l~~~~-~~~-ll~Q~~---~~~~~ll~~f~~~~~~~~~~VL~g~~sf 595 (697)
T PRK11747 521 AEMAEFLPELLEKHKGSLVLFASRRQMQKVADLLPRDL-RLM-LLVQGD---QPRQRLLEKHKKRVDEGEGSVLFGLQSF 595 (697)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHhc-CCc-EEEeCC---chHHHHHHHHHHHhccCCCeEEEEeccc
Confidence 34455555555555568888888888888888886542 222 344564 2578889888642 1112367778999
Q ss_pred cccccccC--CCEEEEEcCCC
Q 042857 1152 GLGINLAT--ADTVIIYDSDF 1170 (1404)
Q Consensus 1152 G~GINL~~--AdtVIi~DsdW 1170 (1404)
.+|||++. +..|||.-.|+
T Consensus 596 ~EGVD~pGd~l~~vII~kLPF 616 (697)
T PRK11747 596 AEGLDLPGDYLTQVIITKIPF 616 (697)
T ss_pred cccccCCCCceEEEEEEcCCC
Confidence 99999975 78999988776
No 169
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=98.03 E-value=0.00017 Score=88.50 Aligned_cols=93 Identities=16% Similarity=0.195 Sum_probs=61.1
Q ss_pred CceEEEEeCCCCHHHHHHHHHHHh-cCCCceEEEeecccccccccccCCCEEEEEcC----CCCHh-----------HHH
Q 042857 1113 PKTYERVDGSVSVGDRQAAITRFN-QDKSRFVFLLSTRSCGLGINLATADTVIIYDS----DFNPH-----------ADI 1176 (1404)
Q Consensus 1113 g~~y~rLdGs~s~~eRq~~Id~Fn-~~~s~~VfLLSTrAgG~GINL~~AdtVIi~Ds----dWNP~-----------~d~ 1176 (1404)
++.+.-|...++..-..++ |+ ++++..-.+++|..+...|.+...-.||=... .+||. .-.
T Consensus 597 ~L~vlpiYSQLp~dlQ~ki---Fq~a~~~vRK~IvATNIAETSLTi~gI~yVID~Gy~K~kvyn~~~G~D~L~~~pIS~A 673 (1042)
T KOG0924|consen 597 DLAVLPIYSQLPADLQAKI---FQKAEGGVRKCIVATNIAETSLTIPGIRYVIDTGYCKLKVYNPRIGMDALQIVPISQA 673 (1042)
T ss_pred ceEEEeehhhCchhhhhhh---cccCCCCceeEEEeccchhhceeecceEEEEecCceeeeecccccccceeEEEechhc
Confidence 3455555666665443333 55 34555667899999999999999888874321 23433 233
Q ss_pred HHHHhhhccCCCCcEEEEEEeeCCCHHHHHHH
Q 042857 1177 QAMNRAHRIGQSKRLLVYRLVVRASVEERILQ 1208 (1404)
Q Consensus 1177 QAigRahRiGQ~k~V~VYrLvt~~TvEE~Ilq 1208 (1404)
||--|++|.|.+.+-..|||+|..++...|+.
T Consensus 674 nA~QRaGRAGRt~pG~cYRlYTe~ay~~eml~ 705 (1042)
T KOG0924|consen 674 NADQRAGRAGRTGPGTCYRLYTEDAYKNEMLP 705 (1042)
T ss_pred cchhhccccCCCCCcceeeehhhhHHHhhccc
Confidence 44445555555667889999999998887763
No 170
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=98.02 E-value=0.00023 Score=92.47 Aligned_cols=111 Identities=17% Similarity=0.227 Sum_probs=78.6
Q ss_pred CCeEEEEecchhHHHHHHHHHhh-hc-CCceEEEEeCCCCHHHHHHHHHHHhcCCCc-eEEEeecccccccccccCCCEE
Q 042857 1087 GHRVLIFSQMTKLLDILEDYLNI-EF-GPKTYERVDGSVSVGDRQAAITRFNQDKSR-FVFLLSTRSCGLGINLATADTV 1163 (1404)
Q Consensus 1087 G~KVLIFSq~~~~LDiLed~L~~-~f-~g~~y~rLdGs~s~~eRq~~Id~Fn~~~s~-~VfLLSTrAgG~GINL~~AdtV 1163 (1404)
..-+|||-.-...++-....|.. .+ ....+.=++|..+.++.++ -|+..... .-+++||+.+..+|++....+|
T Consensus 259 ~GdILvFLpG~~EI~~~~~~L~~~~l~~~~~i~PLy~~L~~~eQ~r---vF~p~~~~~RKVVlATNIAETSLTI~gIr~V 335 (845)
T COG1643 259 SGSILVFLPGQREIERTAEWLEKAELGDDLEILPLYGALSAEEQVR---VFEPAPGGKRKVVLATNIAETSLTIPGIRYV 335 (845)
T ss_pred CCCEEEECCcHHHHHHHHHHHHhccccCCcEEeeccccCCHHHHHh---hcCCCCCCcceEEEEccccccceeeCCeEEE
Confidence 34689998888777777777765 33 3577788999999988777 47654433 4488999999999999998888
Q ss_pred EEEcC----CCCHh--------------HHHHHHHhhhccCCCCcEEEEEEeeCCCHH
Q 042857 1164 IIYDS----DFNPH--------------ADIQAMNRAHRIGQSKRLLVYRLVVRASVE 1203 (1404)
Q Consensus 1164 Ii~Ds----dWNP~--------------~d~QAigRahRiGQ~k~V~VYrLvt~~TvE 1203 (1404)
|=-.. -|||. .-.||-|||+| +.+=..|||++++.++
T Consensus 336 IDsG~ak~~~y~~~~g~~~L~~~~ISqAsA~QRaGRAGR---~~pGicyRLyse~~~~ 390 (845)
T COG1643 336 IDSGLAKEKRYDPRTGLTRLETEPISKASADQRAGRAGR---TGPGICYRLYSEEDFL 390 (845)
T ss_pred ecCCcccccccccccCceeeeEEEechhhhhhhcccccc---CCCceEEEecCHHHHH
Confidence 63211 23443 33456666655 5567899999986655
No 171
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=98.02 E-value=0.00031 Score=89.75 Aligned_cols=171 Identities=20% Similarity=0.190 Sum_probs=97.3
Q ss_pred CCCHHHHHHHHHHHHhhccCCcEEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEeCCCChHH-HHHHHHHHCC--CC
Q 042857 755 ALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLSTMPN-WLAEFALWAP--NL 831 (1404)
Q Consensus 755 ~L~pyQlegVnwL~~~~~~~~~~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP~Sll~n-W~rEf~kw~P--~l 831 (1404)
.|+.+|.+.+.- .....+.|.|.+..++-|||+++=.++....... .+-+|.+.|--.+.+ =..++..+.- ++
T Consensus 223 ~~fewq~ecls~--~~~~e~~nliys~Pts~gktlvaeilml~~~l~~--rr~~llilp~vsiv~Ek~~~l~~~~~~~G~ 298 (1008)
T KOG0950|consen 223 KLFEWQAECLSL--PRLLERKNLIYSLPTSAGKTLVAEILMLREVLCR--RRNVLLILPYVSIVQEKISALSPFSIDLGF 298 (1008)
T ss_pred HHHHHHHHHhcc--hhhhcccceEEeCCCccchHHHHHHHHHHHHHHH--hhceeEecceeehhHHHHhhhhhhccccCC
Confidence 577888887742 2333689999999999999997755444332222 234677777655433 2333333331 45
Q ss_pred cEEEEecchhHHHHHHHhhhccCCCCccccccCCCCceEEEeeHHHHHhhhccccC----CCceEEEEccccccCC--Cc
Q 042857 832 NVVEYHGCAKARAIIRQYEWHASDPDNLNKKTSSYKFNVLLTTYEMILADSSHLRG----VPWEVLVVDEGHRLKN--SG 905 (1404)
Q Consensus 832 ~Vvvy~G~~~~R~~ir~~E~~~~~~~~~~~~~~~~kfdVvITTYe~l~~d~~~L~~----i~w~lVIVDEAHrlKN--~~ 905 (1404)
+|-.|.|.- .+......-+|.|.|-|.-......|-. ...++|||||-|-+.. .+
T Consensus 299 ~ve~y~g~~-------------------~p~~~~k~~sv~i~tiEkanslin~lie~g~~~~~g~vvVdElhmi~d~~rg 359 (1008)
T KOG0950|consen 299 PVEEYAGRF-------------------PPEKRRKRESVAIATIEKANSLINSLIEQGRLDFLGMVVVDELHMIGDKGRG 359 (1008)
T ss_pred cchhhcccC-------------------CCCCcccceeeeeeehHhhHhHHHHHHhcCCccccCcEEEeeeeeeeccccc
Confidence 555555421 1223344668999999887665443321 2356999999999854 22
Q ss_pred cHHHHHHhhc----ccc--cEEEEeccCCCCChHHHHHHhhhhCCCCCCC
Q 042857 906 SKLFSLLNSF----SFQ--HRVLLTGTPLQNNIGEMYNLLNFLQPASFPS 949 (1404)
Q Consensus 906 Sk~~~~L~~l----~~~--~rLLLTGTPlqNnl~EL~sLL~fL~P~~f~s 949 (1404)
.-+-..|..+ ... ..++||+|-..|.+-.-|-- .|+-+..|..
T Consensus 360 ~~lE~~l~k~~y~~~~~~~~iIGMSATi~N~~lL~~~L~-A~~y~t~fRP 408 (1008)
T KOG0950|consen 360 AILELLLAKILYENLETSVQIIGMSATIPNNSLLQDWLD-AFVYTTRFRP 408 (1008)
T ss_pred hHHHHHHHHHHHhccccceeEeeeecccCChHHHHHHhh-hhheecccCc
Confidence 3233333322 122 25889999755543332211 4555554433
No 172
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the KOG1512 consensus PHD Zn-finger protein [General function prediction only]
Probab=98.00 E-value=2.2e-06 Score=94.69 Aligned_cols=46 Identities=35% Similarity=0.819 Sum_probs=39.4
Q ss_pred ccccccccCCC---ceEEcCCCCCcccccccCCCCCCCCCCCccCc-ccccc
Q 042857 75 YYECVICDLGG---NLLCCDSCPRTYHLQCLDPPLKRIPNGKWQCP-KCTQK 122 (1404)
Q Consensus 75 ~~~C~~C~~~g---~ll~Cd~C~~~~H~~Cl~Ppl~~~P~g~W~C~-~C~~~ 122 (1404)
|..|.+|.++. ++++||.|+|+||++|++ |..+|.|.|.|. .|...
T Consensus 314 C~lC~IC~~P~~E~E~~FCD~CDRG~HT~CVG--L~~lP~G~WICD~~C~~~ 363 (381)
T KOG1512|consen 314 CELCRICLGPVIESEHLFCDVCDRGPHTLCVG--LQDLPRGEWICDMRCREA 363 (381)
T ss_pred cHhhhccCCcccchheeccccccCCCCccccc--cccccCccchhhhHHHHh
Confidence 44577777753 599999999999999999 999999999998 67655
No 174
>PF00385 Chromo: Chromo (CHRromatin Organisation MOdifier) domain; InterPro: IPR023780 The CHROMO (CHRromatin Organization MOdifier) domain [, , , ] is a conserved region of around 60 amino acids, originally identified in Drosophila modifiers of variegation. These are proteins that alter the structure of chromatin to the condensed morphology of heterochromatin, a cytologically visible condition where gene expression is repressed. In one of these proteins, Polycomb, the chromo domain has been shown to be important for chromatin targeting. Proteins that contain a chromo domain appear to fall into 3 classes. The first class includes proteins having an N-terminal chromo domain followed by a region termed the chromo shadow domain, with weak but significant sequence similarity to the N-terminal chromo domain,[], eg. Drosophila and human heterochromatin protein Su(var)205 (HP1). The second class includes proteins with a single chromo domain, eg. Drosophila protein Polycomb (Pc); mammalian modifier 3; human Mi-2 autoantigen and several yeast and Caenorhabditis elegans hypothetical proteins. In the third class paired tandem chromo domains are found, eg. in mammalian DNA-binding/helicase proteins CHD-1 to CHD-4 and yeast protein CHD1. Functional dissections of chromo domain proteins suggests a mechanistic role for chromo domains in targeting chromo domain proteins to specific regions of the nucleus. The mechanism of targeting may involve protein-protein and/or protein/nucleic acid interactions. Hence, several line of evidence show that the HP1 chromo domain is a methyl-specific histone binding module, whereas the chromo domain of two protein components of the drosophila dosage compensation complex, MSL3 and MOF, contain chromo domains that bind to RNA in vitro []. The high resolution structures of HP1-family protein chromo and chromo shadow domain reveal a conserved chromo domain fold motif consisting of three beta strands packed against an alpha helix. The chromo domain fold belongs to the OB (oligonucleotide/oligosaccharide binding)-fold class found in a variety of prokaryotic and eukaryotic nucleic acid binding protein [].; PDB: 2H1E_B 3MWY_W 2DY8_A 1KNE_A 1KNA_A 1Q3L_A 2EE1_A 1AP0_A 1GUW_A 1X3P_A ....
Probab=97.99 E-value=1.2e-06 Score=76.27 Aligned_cols=51 Identities=33% Similarity=0.666 Sum_probs=39.6
Q ss_pred chhhhhhhccCCCCc--ceeeeccCCCCCCcccccCCCchHHHhhHHHHHHHHH
Q 042857 663 QPQRVISLRSSKDGT--REAFVKWTGLPYDECTWEKLDEPALEKYSHLTDLFVQ 714 (1404)
Q Consensus 663 ~~eRii~~r~~~~~~--~eylVKW~gL~Y~~~TWE~~~~~~~~~~~~li~~~~~ 714 (1404)
.|+||+++|....+. .+|||||+|++|++||||..+. ....++.+++.|.+
T Consensus 2 ~Ve~Il~~r~~~~~~~~~~ylVkW~g~~~~~~tWe~~~~-l~~~~~~li~~f~~ 54 (55)
T PF00385_consen 2 EVERILDHRVVKGGNKVYEYLVKWKGYPYSENTWEPEEN-LKNCFPELIEEFEK 54 (55)
T ss_dssp EEEEEEEEEEETTEESEEEEEEEETTSSGGGEEEEEGGG-CSSHCHHHHHHHHH
T ss_pred EEEEEEEEEEeCCCcccEEEEEEECCCCCCCCeEeeHHH-HhHhhHHHHHHHhC
Confidence 588999999776665 5999999999999999997442 22235778888765
No 175
>PF13871 Helicase_C_4: Helicase_C-like
Probab=97.93 E-value=2e-05 Score=90.30 Aligned_cols=92 Identities=20% Similarity=0.216 Sum_probs=71.9
Q ss_pred HHHHHHhcCCCceEEEeecccccccccccCC----C----EEEEEcCCCCHhHHHHHHHhhhccCCCCcEEEEEEeeCCC
Q 042857 1130 AAITRFNQDKSRFVFLLSTRSCGLGINLATA----D----TVIIYDSDFNPHADIQAMNRAHRIGQSKRLLVYRLVVRAS 1201 (1404)
Q Consensus 1130 ~~Id~Fn~~~s~~VfLLSTrAgG~GINL~~A----d----tVIi~DsdWNP~~d~QAigRahRiGQ~k~V~VYrLvt~~T 1201 (1404)
...++|+++... |+++ +.||+.||.|++- | .-|+++++|+....+|.+||+||-||..+..+..+++.-.
T Consensus 52 ~e~~~F~~g~k~-v~ii-s~AgstGiSlHAd~~~~nqr~Rv~i~le~pwsad~aiQ~~GR~hRsnQ~~~P~y~~l~t~~~ 129 (278)
T PF13871_consen 52 AEKQAFMDGEKD-VAII-SDAGSTGISLHADRRVKNQRRRVHITLELPWSADKAIQQFGRTHRSNQVSAPEYRFLVTDLP 129 (278)
T ss_pred HHHHHHhCCCce-EEEE-ecccccccchhccccCCCCCceEEEEeeCCCCHHHHHHHhccccccccccCCEEEEeecCCH
Confidence 345789877544 4444 5999999999963 1 3478999999999999999999999988865444555556
Q ss_pred HHHHHHHHHHHHHhhhHHHhcC
Q 042857 1202 VEERILQLAKKKLMLDQLFVNK 1223 (1404)
Q Consensus 1202 vEE~Ilq~a~~Kl~L~~~vv~~ 1223 (1404)
.|.++.....+|+..-.++..+
T Consensus 130 gE~Rfas~va~rL~sLgAlt~g 151 (278)
T PF13871_consen 130 GERRFASTVARRLESLGALTRG 151 (278)
T ss_pred HHHHHHHHHHHHHhhccccccC
Confidence 8999999999999776666554
No 176
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=97.89 E-value=6.6e-05 Score=77.94 Aligned_cols=131 Identities=22% Similarity=0.193 Sum_probs=71.7
Q ss_pred ccCCcEEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEeCCCChHHHHHHHHHHCCCCcEEEEecchhHHHHHHHhhh
Q 042857 772 HKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLSTMPNWLAEFALWAPNLNVVEYHGCAKARAIIRQYEW 851 (1404)
Q Consensus 772 ~~~~~~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP~Sll~nW~rEf~kw~P~l~Vvvy~G~~~~R~~ir~~E~ 851 (1404)
.++.-.+|-.-.|.|||..++--+.. +.....+++||+.|+..+. +|+.+...+..+ .|+-+...
T Consensus 2 ~kg~~~~~d~hpGaGKTr~vlp~~~~--~~i~~~~rvLvL~PTRvva---~em~~aL~~~~~-~~~t~~~~--------- 66 (148)
T PF07652_consen 2 RKGELTVLDLHPGAGKTRRVLPEIVR--EAIKRRLRVLVLAPTRVVA---EEMYEALKGLPV-RFHTNARM--------- 66 (148)
T ss_dssp STTEEEEEE--TTSSTTTTHHHHHHH--HHHHTT--EEEEESSHHHH---HHHHHHTTTSSE-EEESTTSS---------
T ss_pred CCCceeEEecCCCCCCcccccHHHHH--HHHHccCeEEEecccHHHH---HHHHHHHhcCCc-ccCceeee---------
Confidence 34566788889999999987654332 2234556899999998773 344444445542 23321110
Q ss_pred ccCCCCccccccCCCCceEEEeeHHHHHhhh-ccccCCCceEEEEccccccCCCccHHH-HHHhhccc---ccEEEEecc
Q 042857 852 HASDPDNLNKKTSSYKFNVLLTTYEMILADS-SHLRGVPWEVLVVDEGHRLKNSGSKLF-SLLNSFSF---QHRVLLTGT 926 (1404)
Q Consensus 852 ~~~~~~~~~~~~~~~kfdVvITTYe~l~~d~-~~L~~i~w~lVIVDEAHrlKN~~Sk~~-~~L~~l~~---~~rLLLTGT 926 (1404)
......-.|-+++|.++.... ......+|++||+||||-. ++.|-.. -.+..+.. ...++||||
T Consensus 67 ----------~~~~g~~~i~vMc~at~~~~~~~p~~~~~yd~II~DEcH~~-Dp~sIA~rg~l~~~~~~g~~~~i~mTAT 135 (148)
T PF07652_consen 67 ----------RTHFGSSIIDVMCHATYGHFLLNPCRLKNYDVIIMDECHFT-DPTSIAARGYLRELAESGEAKVIFMTAT 135 (148)
T ss_dssp --------------SSSSEEEEEHHHHHHHHHTSSCTTS-SEEEECTTT---SHHHHHHHHHHHHHHHTTS-EEEEEESS
T ss_pred ----------ccccCCCcccccccHHHHHHhcCcccccCccEEEEeccccC-CHHHHhhheeHHHhhhccCeeEEEEeCC
Confidence 012245567889998876532 2344568999999999985 3333222 22333322 246889999
Q ss_pred CC
Q 042857 927 PL 928 (1404)
Q Consensus 927 Pl 928 (1404)
|-
T Consensus 136 PP 137 (148)
T PF07652_consen 136 PP 137 (148)
T ss_dssp -T
T ss_pred CC
Confidence 93
No 177
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=97.81 E-value=0.00041 Score=88.48 Aligned_cols=113 Identities=16% Similarity=0.316 Sum_probs=80.2
Q ss_pred hHHHHHHHHHHHHHHcCCeEEEEecchhHHHHHHHHHhhhcCCceEEEEeCCCCHHHHHHHHHHHhcCCCceEEEeeccc
Q 042857 1071 AKLTLLHSMLKVLYKEGHRVLIFSQMTKLLDILEDYLNIEFGPKTYERVDGSVSVGDRQAAITRFNQDKSRFVFLLSTRS 1150 (1404)
Q Consensus 1071 gKl~~L~kLL~kl~~~G~KVLIFSq~~~~LDiLed~L~~~f~g~~y~rLdGs~s~~eRq~~Id~Fn~~~s~~VfLLSTrA 1150 (1404)
....++..|+..| ..|++|.|||....+.++++++.... +.++..++|..+..+. .. -..+-+++=|.+
T Consensus 267 ~~~tF~~~L~~~L-~~gknIcvfsSt~~~~~~v~~~~~~~--~~~Vl~l~s~~~~~dv----~~----W~~~~VviYT~~ 335 (824)
T PF02399_consen 267 DETTFFSELLARL-NAGKNICVFSSTVSFAEIVARFCARF--TKKVLVLNSTDKLEDV----ES----WKKYDVVIYTPV 335 (824)
T ss_pred chhhHHHHHHHHH-hCCCcEEEEeChHHHHHHHHHHHHhc--CCeEEEEcCCCCcccc----cc----ccceeEEEEece
Confidence 3344555566554 67999999999999999999999865 7788888887665522 11 123346677778
Q ss_pred ccccccccC--CCEEEEE--cCCCCHhH--HHHHHHhhhccCCCCcEEEEE
Q 042857 1151 CGLGINLAT--ADTVIIY--DSDFNPHA--DIQAMNRAHRIGQSKRLLVYR 1195 (1404)
Q Consensus 1151 gG~GINL~~--AdtVIi~--DsdWNP~~--d~QAigRahRiGQ~k~V~VYr 1195 (1404)
..+|+++-. .|.|..| .....|.. ..|.+||+..+.. +++.||.
T Consensus 336 itvG~Sf~~~HF~~~f~yvk~~~~gpd~~s~~Q~lgRvR~l~~-~ei~v~~ 385 (824)
T PF02399_consen 336 ITVGLSFEEKHFDSMFAYVKPMSYGPDMVSVYQMLGRVRSLLD-NEIYVYI 385 (824)
T ss_pred EEEEeccchhhceEEEEEecCCCCCCcHHHHHHHHHHHHhhcc-CeEEEEE
Confidence 899998853 5777666 44455664 6999999999885 4555554
No 178
>PF06465 DUF1087: Domain of Unknown Function (DUF1087); InterPro: IPR009463 This is a group of proteins of unknown function.
Probab=97.81 E-value=1.4e-05 Score=71.70 Aligned_cols=24 Identities=25% Similarity=0.407 Sum_probs=21.1
Q ss_pred hcCCCChhHHHHHHHhHhhhhhhh
Q 042857 1365 AVTGIEENEWDRLLRVRLGALLVL 1388 (1404)
Q Consensus 1365 ~~~~~~~~~w~~ll~~~~~~~~~~ 1388 (1404)
..++++|+|||+||||||||+|+-
T Consensus 18 ~~~~~~~~yWe~LLr~~ye~~q~e 41 (66)
T PF06465_consen 18 EAESTDPNYWEKLLRHRYEQQQEE 41 (66)
T ss_pred hhcccchHHHHHHHHHHHHHHHHH
Confidence 346789999999999999999874
No 179
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=97.78 E-value=0.00017 Score=84.11 Aligned_cols=73 Identities=23% Similarity=0.285 Sum_probs=53.2
Q ss_pred CCCHHHHHHHHHHHHhhccCCcEEEEcCCCchHHHHHHHHHHHHHhhccC---CCcEEEEeCCCCh-HHHHHHHHHH
Q 042857 755 ALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKA---KLPCLVLVPLSTM-PNWLAEFALW 827 (1404)
Q Consensus 755 ~L~pyQlegVnwL~~~~~~~~~~ILADEMGLGKTiqaIa~L~~L~~~~~~---~gP~LIVvP~Sll-~nW~rEf~kw 827 (1404)
..||.|++-+..+...+..+.++|+-..+|+|||+..+..+.......+. ..++++++++... .+-..++++.
T Consensus 8 ~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~~ 84 (289)
T smart00489 8 EPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRKL 84 (289)
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHhc
Confidence 46999999999999999999999999999999999988777544333222 1267777765433 4445555554
No 180
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=97.78 E-value=0.00017 Score=84.11 Aligned_cols=73 Identities=23% Similarity=0.285 Sum_probs=53.2
Q ss_pred CCCHHHHHHHHHHHHhhccCCcEEEEcCCCchHHHHHHHHHHHHHhhccC---CCcEEEEeCCCCh-HHHHHHHHHH
Q 042857 755 ALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKA---KLPCLVLVPLSTM-PNWLAEFALW 827 (1404)
Q Consensus 755 ~L~pyQlegVnwL~~~~~~~~~~ILADEMGLGKTiqaIa~L~~L~~~~~~---~gP~LIVvP~Sll-~nW~rEf~kw 827 (1404)
..||.|++-+..+...+..+.++|+-..+|+|||+..+..+.......+. ..++++++++... .+-..++++.
T Consensus 8 ~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~~ 84 (289)
T smart00488 8 EPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRKL 84 (289)
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHhc
Confidence 46999999999999999999999999999999999988777544333222 1267777765433 4445555554
No 181
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=97.74 E-value=0.022 Score=75.11 Aligned_cols=396 Identities=16% Similarity=0.147 Sum_probs=187.0
Q ss_pred CCHHHHHHHHHHHHhhc----cCCcEEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEeCCCCh-HHHHHHHHHHC--
Q 042857 756 LFPHQLEALNWLRKCWH----KSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLSTM-PNWLAEFALWA-- 828 (1404)
Q Consensus 756 L~pyQlegVnwL~~~~~----~~~~~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP~Sll-~nW~rEf~kw~-- 828 (1404)
=+-+|-.+++.+...-. .|--++-...+|.|||+.=.-+++.|...... -+|-|.--+.+| -|=-.+++.-.
T Consensus 409 rF~WQdkA~d~a~~~r~~~~~~GfF~vNMASTGcGKT~aNARImyaLsd~~~g-~RfsiALGLRTLTLQTGda~r~rL~L 487 (1110)
T TIGR02562 409 RFRWQNKAFNLAQKLRQKSPEQGAFGVNMASTGCGKTLANARAMYALRDDKQG-ARFAIALGLRSLTLQTGHALKTRLNL 487 (1110)
T ss_pred CcchHHHHHHHHHHHHhhcccCCeEEEEecCCCcchHHHHHHHHHHhCCCCCC-ceEEEEccccceeccchHHHHHhcCC
Confidence 36789999987755332 23335666799999999988888777643332 366666666555 45455555433
Q ss_pred CCCcEEEEecchhHHHHHHHhhhcc----CCCC----------c---c-------------------ccccCCCCceEEE
Q 042857 829 PNLNVVEYHGCAKARAIIRQYEWHA----SDPD----------N---L-------------------NKKTSSYKFNVLL 872 (1404)
Q Consensus 829 P~l~Vvvy~G~~~~R~~ir~~E~~~----~~~~----------~---~-------------------~~~~~~~kfdVvI 872 (1404)
.+-...+..|+...+......+-.. ..++ . . .+........|+|
T Consensus 488 ~~ddLAVlIGs~Av~~L~e~~~~~~~~~~~~GSeS~e~l~~e~~~~~~~~~~g~l~~~~l~~~l~~~~k~~rll~apv~V 567 (1110)
T TIGR02562 488 SDDDLAVLIGGTAVQTLFDLSKEKIEQVDEDGSESAPIFLAEGQDCNLPDWDGPLDTIELLGRLSLDDKEKTLLAAPVLV 567 (1110)
T ss_pred CccceEEEECHHHHHHHHHHHhhhccccccCCCccchhhhcccCcCCeeeccCCccchhhhhhhccChhhhhhhcCCeEE
Confidence 2334566677777766543211100 0000 0 0 0001112346888
Q ss_pred eeHHHHHhhhcccc---------CCCceEEEEccccccCCCccH-HHHHHh--hcccccEEEEeccCCCCChHHHHHHhh
Q 042857 873 TTYEMILADSSHLR---------GVPWEVLVVDEGHRLKNSGSK-LFSLLN--SFSFQHRVLLTGTPLQNNIGEMYNLLN 940 (1404)
Q Consensus 873 TTYe~l~~d~~~L~---------~i~w~lVIVDEAHrlKN~~Sk-~~~~L~--~l~~~~rLLLTGTPlqNnl~EL~sLL~ 940 (1404)
+|.+.+..-...++ .+-=..|||||.|-+-..... +...|. ..-....++||||--..-...|+....
T Consensus 568 ~TIDQlL~a~~~~r~~~~~l~ll~La~svlVlDEVHaYD~~~~~~L~rlL~w~~~lG~~VlLmSATLP~~l~~~L~~Ay~ 647 (1110)
T TIGR02562 568 CTIDHLIPATESHRGGHHIAPMLRLMSSDLILDEPDDYEPEDLPALLRLVQLAGLLGSRVLLSSATLPPALVKTLFRAYE 647 (1110)
T ss_pred ecHHHHHHHhhhcccchhHHHHHHhcCCCEEEECCccCCHHHHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHH
Confidence 89888775432222 222368999999988432222 222222 223567799999975544444332221
Q ss_pred -------hhC--CCC-CC----ChhHHHHHhccccchHHHHHHHHhhhhhhhhhhHhhhhhcCCCceEEEEEecCCH-HH
Q 042857 941 -------FLQ--PAS-FP----SLSSFEEKFNDLTTTQKVEELKKLVAPHMLRRLKKDAMQNIPPKTERMVPVELSS-IQ 1005 (1404)
Q Consensus 941 -------fL~--P~~-f~----s~~~F~~~f~d~~~~~~i~~L~~lL~p~mLRR~K~dV~~~LPpk~e~iV~V~LS~-~Q 1005 (1404)
-.. |+. +. -.++|.....+.. ....+...-..|+-.|.+. +.+..+-..-.+++|+... ..
T Consensus 648 ~G~~~~q~~~g~~~~~~~i~CaW~DE~~~~~~~~~---~~~~F~~~H~~Fv~~R~~~-L~~~p~~R~a~i~~~~~~~~~~ 723 (1110)
T TIGR02562 648 AGRQMYQALYGQPKKPLNICCAWVDEPQVWQADCN---QKSEFIQRHQDFLRDRAVQ-LAKKPVRRLAELLSLSSLPREN 723 (1110)
T ss_pred HHHHHHHHhcCCCCCCcceeEEeecccCchhhhhc---CHHHHHHHHHHHHHHHHHH-HhcCcccceEEEeecCCcccch
Confidence 010 111 00 1112222212221 1233444444455555443 2223344445556665432 11
Q ss_pred HHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHhCCCCCCCCCCC--CCCcHHHHHHHHHhhhhHHHHHHHHHHHH
Q 042857 1006 AEYYRAMLTKNYQILRNIGKGVAQQSMLNIVMQLRKVCNHPYLIPGTEP--DSGSVEFLHEMRIKASAKLTLLHSMLKVL 1083 (1404)
Q Consensus 1006 k~~Y~~il~~n~~~L~~~~kg~~~~sllnilm~LRK~cnHP~L~~~~e~--~~~~~e~l~~~~i~~SgKl~~L~kLL~kl 1083 (1404)
...|..+.. .+...+.+|.+. |-...+.... .-|...+ .+-.+=+.+-..++..+
T Consensus 724 ~~~~~~~a~----------------~i~~~~~~LH~~--h~~~~~~sgk~VSfGliR~-----anI~p~V~~A~~L~~~~ 780 (1110)
T TIGR02562 724 ESTYLALAQ----------------SLLEGALRLHQA--HAQTDPKSEKKVSVGLIRV-----ANIDPLIRLAQFLYALL 780 (1110)
T ss_pred hHHHHHHHH----------------HHHHHHHHHHHH--hCccCCCCCeEEEEEEEEE-----cCchHHHHHHHHHHhhc
Confidence 122222211 122223333332 2222111100 0000000 00011222333344444
Q ss_pred HHcCCeE---EEEecchhHH-HHHHHHHhhhcCCceEEEEeCCCCHHHHHHHHHHHhcC---CCceEEEeeccccccccc
Q 042857 1084 YKEGHRV---LIFSQMTKLL-DILEDYLNIEFGPKTYERVDGSVSVGDRQAAITRFNQD---KSRFVFLLSTRSCGLGIN 1156 (1404)
Q Consensus 1084 ~~~G~KV---LIFSq~~~~L-DiLed~L~~~f~g~~y~rLdGs~s~~eRq~~Id~Fn~~---~s~~VfLLSTrAgG~GIN 1156 (1404)
...+.++ +.-|+|+-.+ -.+|..|...+ .|.+. ...-+...|.++-.. ....+++|+|.+...|+|
T Consensus 781 ~~~~~~i~~~~yHSr~~l~~Rs~~E~~Ld~~L-----~R~~~--~~~~~~~~i~~~l~~~~~~~~~~i~v~Tqv~E~g~D 853 (1110)
T TIGR02562 781 AEEKYQIHLCCYHAQDPLLLRSYIERRLDQLL-----TRHKP--EQLFQDDEIIDLMQNSPALNHLFIVLATPVEEVGRD 853 (1110)
T ss_pred cccCCceeEEEecccChHHHHHHHHHHHHHHh-----cccCh--hhhhchHHHHHHHhcccccCCCeEEEEeeeEEEEec
Confidence 4445332 2246665433 33444443321 11111 112334445554433 134578999999999999
Q ss_pred ccCCCEEEEEcCCCCHhHHHHHHHhhhccCCCC
Q 042857 1157 LATADTVIIYDSDFNPHADIQAMNRAHRIGQSK 1189 (1404)
Q Consensus 1157 L~~AdtVIi~DsdWNP~~d~QAigRahRiGQ~k 1189 (1404)
+- +|.+|.-=+ .-...+|+.||+.|-|+..
T Consensus 854 ~d-fd~~~~~~~--~~~sliQ~aGR~~R~~~~~ 883 (1110)
T TIGR02562 854 HD-YDWAIADPS--SMRSIIQLAGRVNRHRLEK 883 (1110)
T ss_pred cc-CCeeeeccC--cHHHHHHHhhcccccccCC
Confidence 74 565554322 3557899999999999743
No 182
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=97.72 E-value=9.6e-06 Score=102.18 Aligned_cols=50 Identities=48% Similarity=1.158 Sum_probs=45.9
Q ss_pred CcccccccccccCCCceEEcCCCCCcccccccCCCCCCCCCCCccCcccc
Q 042857 71 NDGYYYECVICDLGGNLLCCDSCPRTYHLQCLDPPLKRIPNGKWQCPKCT 120 (1404)
Q Consensus 71 ~d~~~~~C~~C~~~g~ll~Cd~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~ 120 (1404)
.+.....|.+|.++|.+|+||.|+.+||.+|++||+...|.++|.|+.|.
T Consensus 43 ~~~~~e~c~ic~~~g~~l~c~tC~~s~h~~cl~~pl~~~p~~~~~c~Rc~ 92 (696)
T KOG0383|consen 43 DDAEQEACRICADGGELLWCDTCPASFHASCLGPPLTPQPNGEFICPRCF 92 (696)
T ss_pred chhhhhhhhhhcCCCcEEEeccccHHHHHHccCCCCCcCCccceeeeeec
Confidence 34556689999999999999999999999999999999999999999994
No 183
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=97.71 E-value=0.00091 Score=82.31 Aligned_cols=84 Identities=19% Similarity=0.202 Sum_probs=57.6
Q ss_pred CceEEEEeCCCCHHHHHHHHHHHhc-CCCceEEEeecccccccccccCCCEEEEEcCC------CCH-------------
Q 042857 1113 PKTYERVDGSVSVGDRQAAITRFNQ-DKSRFVFLLSTRSCGLGINLATADTVIIYDSD------FNP------------- 1172 (1404)
Q Consensus 1113 g~~y~rLdGs~s~~eRq~~Id~Fn~-~~s~~VfLLSTrAgG~GINL~~AdtVIi~Dsd------WNP------------- 1172 (1404)
.+-++-|+.+.+......+ |.. +++..-++|.|..+...|.+....+|| ||. +||
T Consensus 506 eliv~PiYaNLPselQakI---FePtP~gaRKVVLATNIAETSlTIdgI~yVi--DpGf~K~nsynprtGmesL~v~piS 580 (902)
T KOG0923|consen 506 ELIVLPIYANLPSELQAKI---FEPTPPGARKVVLATNIAETSLTIDGIKYVI--DPGFVKQNSYNPRTGMESLLVTPIS 580 (902)
T ss_pred eEEEeeccccCChHHHHhh---cCCCCCCceeEEEeecchhhceeecCeEEEe--cCccccccCcCCCcCceeEEEeeec
Confidence 4455667788887665554 543 344456788999999999988877775 443 344
Q ss_pred -hHHHHHHHhhhccCCCCcEEEEEEeeCCCHHH
Q 042857 1173 -HADIQAMNRAHRIGQSKRLLVYRLVVRASVEE 1204 (1404)
Q Consensus 1173 -~~d~QAigRahRiGQ~k~V~VYrLvt~~TvEE 1204 (1404)
+.-.||.|||+|.| +-..|||+|.-+++.
T Consensus 581 KAsA~QRaGRAGRtg---PGKCfRLYt~~aY~~ 610 (902)
T KOG0923|consen 581 KASANQRAGRAGRTG---PGKCFRLYTAWAYEH 610 (902)
T ss_pred hhhhhhhccccCCCC---CCceEEeechhhhhh
Confidence 34567777777766 556899999766544
No 184
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=97.68 E-value=0.0035 Score=80.70 Aligned_cols=115 Identities=18% Similarity=0.199 Sum_probs=88.2
Q ss_pred hhhhHHHHHHHHHHHHHHcCCeEEEEecchhHHHHHHHHHhhhcCCceEEEEeCCCCHHHHHHHHHHHhcCCCceEEEee
Q 042857 1068 KASAKLTLLHSMLKVLYKEGHRVLIFSQMTKLLDILEDYLNIEFGPKTYERVDGSVSVGDRQAAITRFNQDKSRFVFLLS 1147 (1404)
Q Consensus 1068 ~~SgKl~~L~kLL~kl~~~G~KVLIFSq~~~~LDiLed~L~~~f~g~~y~rLdGs~s~~eRq~~Id~Fn~~~s~~VfLLS 1147 (1404)
..-.|+.++.+-+......|..|||-+.....-+.|...|... +++...|+-.-. .|+.-|-.+. +... .+-++
T Consensus 410 t~~~K~~Aiv~~I~~~~~~gqPvLvgT~sie~SE~ls~~L~~~--~i~h~VLNAk~h--~~EA~Iia~A-G~~g-aVTiA 483 (822)
T COG0653 410 TEEEKFKAIVEDIKERHEKGQPVLVGTVSIEKSELLSKLLRKA--GIPHNVLNAKNH--AREAEIIAQA-GQPG-AVTIA 483 (822)
T ss_pred chHHHHHHHHHHHHHHHhcCCCEEEcCcceecchhHHHHHHhc--CCCceeeccccH--HHHHHHHhhc-CCCC-ccccc
Confidence 3568999999999999999999999999999999999999976 788888877654 4555454442 2222 35589
Q ss_pred cccccccccccC-CC----------EEEEEcCCCCHhHHHHHHHhhhccCCC
Q 042857 1148 TRSCGLGINLAT-AD----------TVIIYDSDFNPHADIQAMNRAHRIGQS 1188 (1404)
Q Consensus 1148 TrAgG~GINL~~-Ad----------tVIi~DsdWNP~~d~QAigRahRiGQ~ 1188 (1404)
|.-+|+|-++.- .+ .||--.-.-+-..+.|-.||++|.|-.
T Consensus 484 TNMAGRGTDIkLg~~~~~V~~lGGL~VIgTERhESRRIDnQLRGRsGRQGDp 535 (822)
T COG0653 484 TNMAGRGTDIKLGGNPEFVMELGGLHVIGTERHESRRIDNQLRGRAGRQGDP 535 (822)
T ss_pred cccccCCcccccCCCHHHHHHhCCcEEEecccchhhHHHHHhhcccccCCCc
Confidence 999999998853 32 455555555666778999999999953
No 185
>PF00385 Chromo: Chromo (CHRromatin Organisation MOdifier) domain; InterPro: IPR023780 The CHROMO (CHRromatin Organization MOdifier) domain [, , , ] is a conserved region of around 60 amino acids, originally identified in Drosophila modifiers of variegation. These are proteins that alter the structure of chromatin to the condensed morphology of heterochromatin, a cytologically visible condition where gene expression is repressed. In one of these proteins, Polycomb, the chromo domain has been shown to be important for chromatin targeting. Proteins that contain a chromo domain appear to fall into 3 classes. The first class includes proteins having an N-terminal chromo domain followed by a region termed the chromo shadow domain, with weak but significant sequence similarity to the N-terminal chromo domain,[], eg. Drosophila and human heterochromatin protein Su(var)205 (HP1). The second class includes proteins with a single chromo domain, eg. Drosophila protein Polycomb (Pc); mammalian modifier 3; human Mi-2 autoantigen and several yeast and Caenorhabditis elegans hypothetical proteins. In the third class paired tandem chromo domains are found, eg. in mammalian DNA-binding/helicase proteins CHD-1 to CHD-4 and yeast protein CHD1. Functional dissections of chromo domain proteins suggests a mechanistic role for chromo domains in targeting chromo domain proteins to specific regions of the nucleus. The mechanism of targeting may involve protein-protein and/or protein/nucleic acid interactions. Hence, several line of evidence show that the HP1 chromo domain is a methyl-specific histone binding module, whereas the chromo domain of two protein components of the drosophila dosage compensation complex, MSL3 and MOF, contain chromo domains that bind to RNA in vitro []. The high resolution structures of HP1-family protein chromo and chromo shadow domain reveal a conserved chromo domain fold motif consisting of three beta strands packed against an alpha helix. The chromo domain fold belongs to the OB (oligonucleotide/oligosaccharide binding)-fold class found in a variety of prokaryotic and eukaryotic nucleic acid binding protein [].; PDB: 2H1E_B 3MWY_W 2DY8_A 1KNE_A 1KNA_A 1Q3L_A 2EE1_A 1AP0_A 1GUW_A 1X3P_A ....
Probab=97.58 E-value=1.6e-05 Score=69.29 Aligned_cols=38 Identities=37% Similarity=0.740 Sum_probs=33.9
Q ss_pred eEEEEEEecCccccccccCCHHHHHHHHHHHHHHHHHh
Q 042857 611 SYEFLVKWVGKSNIHNSWIPESQLKVLAKRKLENYKAK 648 (1404)
Q Consensus 611 ~~eylVKw~~~Sy~h~~Wv~e~~l~~~~~~~l~~~~~k 648 (1404)
..+|||||+|.+|.||+|++++.|....+.+++.|.+|
T Consensus 18 ~~~ylVkW~g~~~~~~tWe~~~~l~~~~~~li~~f~~r 55 (55)
T PF00385_consen 18 VYEYLVKWKGYPYSENTWEPEENLKNCFPELIEEFEKR 55 (55)
T ss_dssp EEEEEEEETTSSGGGEEEEEGGGCSSHCHHHHHHHHHH
T ss_pred cEEEEEEECCCCCCCCeEeeHHHHhHhhHHHHHHHhCC
Confidence 57999999999999999999999887778888888754
No 186
>KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics]
Probab=97.51 E-value=1.7e-05 Score=107.21 Aligned_cols=49 Identities=37% Similarity=1.003 Sum_probs=44.1
Q ss_pred ccccccccCCCc---eEEcCCCCCcccccccCCCCCCCCCCCccCccccccc
Q 042857 75 YYECVICDLGGN---LLCCDSCPRTYHLQCLDPPLKRIPNGKWQCPKCTQKN 123 (1404)
Q Consensus 75 ~~~C~~C~~~g~---ll~Cd~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~~ 123 (1404)
...|.+|...++ |++||.|..+||++|+.|.+..+|.|+|+||.|+...
T Consensus 1108 ~~~c~~cr~k~~~~~m~lc~~c~~~~h~~C~rp~~~~~~~~dW~C~~c~~e~ 1159 (1404)
T KOG1245|consen 1108 NALCKVCRRKKQDEKMLLCDECLSGFHLFCLRPALSSVPPGDWMCPSCRKEH 1159 (1404)
T ss_pred hhhhhhhhhcccchhhhhhHhhhhhHHHHhhhhhhccCCcCCccCCccchhh
Confidence 336999988654 9999999999999999999999999999999998764
No 187
>cd00024 CHROMO Chromatin organization modifier (chromo) domain is a conserved region of around 50 amino acids found in a variety of chromosomal proteins, which appear to play a role in the functional organization of the eukaryotic nucleus. Experimental evidence implicates the chromo domain in the binding activity of these proteins to methylated histone tails and maybe RNA. May occur as single instance, in a tandem arrangement or followd by a related "chromo shadow" domain.
Probab=97.46 E-value=6e-05 Score=65.28 Aligned_cols=48 Identities=40% Similarity=0.721 Sum_probs=35.6
Q ss_pred hhhhhhhccCCC-CcceeeeccCCCCCCcccccCCCchHHHhhHHHHHHHH
Q 042857 664 PQRVISLRSSKD-GTREAFVKWTGLPYDECTWEKLDEPALEKYSHLTDLFV 713 (1404)
Q Consensus 664 ~eRii~~r~~~~-~~~eylVKW~gL~Y~~~TWE~~~~~~~~~~~~li~~~~ 713 (1404)
+++|+++|.... +..+|||||+|++|.++|||..+. +.....+++.|.
T Consensus 5 ve~Il~~r~~~~~~~~~y~VkW~g~~~~~~tWe~~~~--l~~~~~~i~~~~ 53 (55)
T cd00024 5 VEKILDHRKKKDGGEYEYLVKWKGYSYSEDTWEPEEN--LEDCKELIDEFK 53 (55)
T ss_pred EeeeeeeeecCCCCcEEEEEEECCCCCccCccccHHH--hCchHHHHHHHH
Confidence 489999987665 778999999999999999996442 222244555553
No 188
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=97.46 E-value=0.00043 Score=83.88 Aligned_cols=101 Identities=24% Similarity=0.337 Sum_probs=81.0
Q ss_pred HcCCeEEEEecchhHHHHHHHHHhhhcCCceEEEEeCCCCHHHHHHHHHHHhcCCCceEEEeecccccccccccCCCEEE
Q 042857 1085 KEGHRVLIFSQMTKLLDILEDYLNIEFGPKTYERVDGSVSVGDRQAAITRFNQDKSRFVFLLSTRSCGLGINLATADTVI 1164 (1404)
Q Consensus 1085 ~~G~KVLIFSq~~~~LDiLed~L~~~f~g~~y~rLdGs~s~~eRq~~Id~Fn~~~s~~VfLLSTrAgG~GINL~~AdtVI 1164 (1404)
..|.-|+-||... +-.+..-+... ++.....|.|+.+++.|.+.-..||++.+.+-+|+.|.|.|.|||| +.++||
T Consensus 356 k~GDCvV~FSkk~--I~~~k~kIE~~-g~~k~aVIYGsLPPeTr~aQA~~FNd~~~e~dvlVAsDAIGMGLNL-~IrRii 431 (700)
T KOG0953|consen 356 KPGDCVVAFSKKD--IFTVKKKIEKA-GNHKCAVIYGSLPPETRLAQAALFNDPSNECDVLVASDAIGMGLNL-NIRRII 431 (700)
T ss_pred CCCCeEEEeehhh--HHHHHHHHHHh-cCcceEEEecCCCCchhHHHHHHhCCCCCccceEEeeccccccccc-ceeEEE
Confidence 4688999998632 22233444444 3556899999999999999999999988888899999999999999 489999
Q ss_pred EEcCC---------CCHhHHHHHHHhhhccCCCC
Q 042857 1165 IYDSD---------FNPHADIQAMNRAHRIGQSK 1189 (1404)
Q Consensus 1165 i~Dsd---------WNP~~d~QAigRahRiGQ~k 1189 (1404)
||+.- -...+..|.-|||+|.|..-
T Consensus 432 F~sl~Kysg~e~~~it~sqikQIAGRAGRf~s~~ 465 (700)
T KOG0953|consen 432 FYSLIKYSGRETEDITVSQIKQIAGRAGRFGSKY 465 (700)
T ss_pred EeecccCCcccceeccHHHHHHHhhcccccccCC
Confidence 99864 45667889999999998643
No 189
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=97.44 E-value=0.0035 Score=75.09 Aligned_cols=62 Identities=24% Similarity=0.336 Sum_probs=47.7
Q ss_pred ceEEEeecccccccccccCCCEEEEEcCC------CCH-----------hHHHHHHHhhhccCCCCcEEEEEEeeCCCHH
Q 042857 1141 RFVFLLSTRSCGLGINLATADTVIIYDSD------FNP-----------HADIQAMNRAHRIGQSKRLLVYRLVVRASVE 1203 (1404)
Q Consensus 1141 ~~VfLLSTrAgG~GINL~~AdtVIi~Dsd------WNP-----------~~d~QAigRahRiGQ~k~V~VYrLvt~~TvE 1203 (1404)
..-+++||..+...|.+.+.-+|| ||. +|| ..-.||..|++|.|.+++-..|||+|+..++
T Consensus 313 ~RkvVvstniaetsltidgiv~VI--DpGf~kqkVYNPRIRvesllv~PISkasA~qR~gragrt~pGkcfrLYte~~~~ 390 (699)
T KOG0925|consen 313 GRKVVVSTNIAETSLTIDGIVFVI--DPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRPGKCFRLYTEEAFE 390 (699)
T ss_pred cceEEEEecchheeeeeccEEEEe--cCchhhhcccCcceeeeeeeeccchHhHHHHHhhhccCCCCCceEEeecHHhhh
Confidence 345789999999988887665554 543 454 4557999999999999999999999986554
Q ss_pred H
Q 042857 1204 E 1204 (1404)
Q Consensus 1204 E 1204 (1404)
-
T Consensus 391 ~ 391 (699)
T KOG0925|consen 391 K 391 (699)
T ss_pred h
Confidence 3
No 190
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=97.36 E-value=0.00051 Score=75.71 Aligned_cols=68 Identities=24% Similarity=0.254 Sum_probs=47.6
Q ss_pred CCCHHHHHHHHHHHHhhccCCc-EEEEcCCCchHHHHHHHHHHHHHh-----hccCCCcEEEEeCCC-ChHHHHHHHHH
Q 042857 755 ALFPHQLEALNWLRKCWHKSKN-VILADEMGLGKTVSACAFISSLYC-----EFKAKLPCLVLVPLS-TMPNWLAEFAL 826 (1404)
Q Consensus 755 ~L~pyQlegVnwL~~~~~~~~~-~ILADEMGLGKTiqaIa~L~~L~~-----~~~~~gP~LIVvP~S-ll~nW~rEf~k 826 (1404)
+|-+.|.+++..++. ... .++....|+|||.+..+++..++. .....+++||++|.. .+.+-...+.+
T Consensus 1 ~ln~~Q~~Ai~~~~~----~~~~~~i~GpPGTGKT~~l~~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 1 KLNESQREAIQSALS----SNGITLIQGPPGTGKTTTLASIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp ---HHHHHHHHHHCT----SSE-EEEE-STTSSHHHHHHHHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHc----CCCCEEEECCCCCChHHHHHHHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 377899999976544 455 889999999999888888877732 245667899999975 55777777766
No 191
>KOG4443 consensus Putative transcription factor HALR/MLL3, involved in embryonic development [General function prediction only]
Probab=97.36 E-value=8e-05 Score=91.32 Aligned_cols=52 Identities=35% Similarity=0.899 Sum_probs=43.7
Q ss_pred ccccccccccCCCc---eEEcCCCCCcccccccCCCCCCCCCCCccCcccccccc
Q 042857 73 GYYYECVICDLGGN---LLCCDSCPRTYHLQCLDPPLKRIPNGKWQCPKCTQKND 124 (1404)
Q Consensus 73 ~~~~~C~~C~~~g~---ll~Cd~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~~~ 124 (1404)
..|..|..|+.+|+ +++|+.|+-+||.||..|++..+|.|.|+|+.|..-..
T Consensus 66 ~~crvCe~c~~~gD~~kf~~Ck~cDvsyh~yc~~P~~~~v~sg~~~ckk~~~c~q 120 (694)
T KOG4443|consen 66 PSCRVCEACGTTGDPKKFLLCKRCDVSYHCYCQKPPNDKVPSGPWLCKKCTRCRQ 120 (694)
T ss_pred CCceeeeeccccCCcccccccccccccccccccCCccccccCcccccHHHHhhhh
Confidence 34556777776665 99999999999999999999999999999998875433
No 192
>cd00024 CHROMO Chromatin organization modifier (chromo) domain is a conserved region of around 50 amino acids found in a variety of chromosomal proteins, which appear to play a role in the functional organization of the eukaryotic nucleus. Experimental evidence implicates the chromo domain in the binding activity of these proteins to methylated histone tails and maybe RNA. May occur as single instance, in a tandem arrangement or followd by a related "chromo shadow" domain.
Probab=97.33 E-value=0.00019 Score=62.16 Aligned_cols=37 Identities=38% Similarity=0.759 Sum_probs=32.1
Q ss_pred eeEEEEEEecCccccccccCCHHHHHHHHHHHHHHHHH
Q 042857 610 VSYEFLVKWVGKSNIHNSWIPESQLKVLAKRKLENYKA 647 (1404)
Q Consensus 610 ~~~eylVKw~~~Sy~h~~Wv~e~~l~~~~~~~l~~~~~ 647 (1404)
+..+|||||+|.+|.||+|++++.|... +.++..|.+
T Consensus 18 ~~~~y~VkW~g~~~~~~tWe~~~~l~~~-~~~i~~~~~ 54 (55)
T cd00024 18 GEYEYLVKWKGYSYSEDTWEPEENLEDC-KELIDEFKK 54 (55)
T ss_pred CcEEEEEEECCCCCccCccccHHHhCch-HHHHHHHHh
Confidence 4689999999999999999999999876 677777764
No 193
>smart00298 CHROMO Chromatin organization modifier domain.
Probab=97.10 E-value=0.0003 Score=60.76 Aligned_cols=48 Identities=33% Similarity=0.578 Sum_probs=35.7
Q ss_pred hhhhhhhccCCCCcceeeeccCCCCCCcccccCCCchHHHhhHHHHHHHH
Q 042857 664 PQRVISLRSSKDGTREAFVKWTGLPYDECTWEKLDEPALEKYSHLTDLFV 713 (1404)
Q Consensus 664 ~eRii~~r~~~~~~~eylVKW~gL~Y~~~TWE~~~~~~~~~~~~li~~~~ 713 (1404)
|+||+++|....+..+|||||.|++|.++||+..+. +.....++..|.
T Consensus 4 v~~Il~~r~~~~~~~~ylVkW~g~~~~~~tW~~~~~--l~~~~~~v~~~~ 51 (55)
T smart00298 4 VEKILDHRWKKKGELEYLVKWKGYSYSEDTWEPEEN--LLNCSKKLDNYK 51 (55)
T ss_pred hheeeeeeecCCCcEEEEEEECCCCCccCceeeHHH--HHHHHHHHHHHH
Confidence 899999985456778999999999999999996432 222444555554
No 194
>smart00298 CHROMO Chromatin organization modifier domain.
Probab=97.08 E-value=0.00077 Score=58.22 Aligned_cols=39 Identities=44% Similarity=0.769 Sum_probs=33.4
Q ss_pred ceeEEEEEEecCccccccccCCHHHHHHHHHHHHHHHHHh
Q 042857 609 AVSYEFLVKWVGKSNIHNSWIPESQLKVLAKRKLENYKAK 648 (1404)
Q Consensus 609 ~~~~eylVKw~~~Sy~h~~Wv~e~~l~~~~~~~l~~~~~k 648 (1404)
....+|||||+|.+|.+++|++...|.. ....+.+|..+
T Consensus 15 ~~~~~ylVkW~g~~~~~~tW~~~~~l~~-~~~~v~~~~~~ 53 (55)
T smart00298 15 KGELEYLVKWKGYSYSEDTWEPEENLLN-CSKKLDNYKKK 53 (55)
T ss_pred CCcEEEEEEECCCCCccCceeeHHHHHH-HHHHHHHHHHh
Confidence 3457999999999999999999999987 77778877654
No 195
>KOG4323 consensus Polycomb-like PHD Zn-finger protein [General function prediction only]
Probab=97.02 E-value=0.00021 Score=86.03 Aligned_cols=48 Identities=35% Similarity=0.906 Sum_probs=38.5
Q ss_pred ccccccCCC-----ceEEcCCCCCcccccccCCCCCCC----CCCCccCcccccccc
Q 042857 77 ECVICDLGG-----NLLCCDSCPRTYHLQCLDPPLKRI----PNGKWQCPKCTQKND 124 (1404)
Q Consensus 77 ~C~~C~~~g-----~ll~Cd~C~~~~H~~Cl~Ppl~~~----P~g~W~C~~C~~~~~ 124 (1404)
.|.+|+.|+ +||.|++|..+||..|+.|+.+.. |...|||..|.....
T Consensus 170 qc~vC~~g~~~~~NrmlqC~~C~~~fHq~Chqp~i~~~l~~D~~~~w~C~~C~~~~~ 226 (464)
T KOG4323|consen 170 QCSVCYCGGPGAGNRMLQCDKCRQWYHQACHQPLIKDELAGDPFYEWFCDVCNRGPK 226 (464)
T ss_pred eeeeeecCCcCccceeeeecccccHHHHHhccCCCCHhhccCccceEeehhhccchh
Confidence 377777653 499999999999999999987554 456699999997643
No 196
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=96.98 E-value=0.0088 Score=75.26 Aligned_cols=66 Identities=24% Similarity=0.364 Sum_probs=48.2
Q ss_pred HHHHhcCC-CceEEEeecccccccccccCCCEEE--------EEcC---------CC-CHhHHHHHHHhhhccCCCCcEE
Q 042857 1132 ITRFNQDK-SRFVFLLSTRSCGLGINLATADTVI--------IYDS---------DF-NPHADIQAMNRAHRIGQSKRLL 1192 (1404)
Q Consensus 1132 Id~Fn~~~-s~~VfLLSTrAgG~GINL~~AdtVI--------i~Ds---------dW-NP~~d~QAigRahRiGQ~k~V~ 1192 (1404)
+.-|...+ +....+++|.++...|.++...+|| +||. +| +-+.-.||.|||+|+|- -+
T Consensus 620 ~RVF~~~p~g~RLcVVaTNVAETSLTIPgIkYVVD~Gr~K~R~Yd~~TGV~~FeV~wiSkASadQRAGRAGRtgp---GH 696 (1172)
T KOG0926|consen 620 MRVFDEVPKGERLCVVATNVAETSLTIPGIKYVVDCGRVKERLYDSKTGVSSFEVDWISKASADQRAGRAGRTGP---GH 696 (1172)
T ss_pred hhhccCCCCCceEEEEeccchhcccccCCeeEEEeccchhhhccccccCceeEEEEeeeccccchhccccCCCCC---Cc
Confidence 44565533 4566789999999999999999987 3443 34 34456799999999884 57
Q ss_pred EEEEeeCC
Q 042857 1193 VYRLVVRA 1200 (1404)
Q Consensus 1193 VYrLvt~~ 1200 (1404)
.|||++..
T Consensus 697 cYRLYSSA 704 (1172)
T KOG0926|consen 697 CYRLYSSA 704 (1172)
T ss_pred eeehhhhH
Confidence 89997754
No 197
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Probab=96.91 E-value=0.0043 Score=75.10 Aligned_cols=135 Identities=19% Similarity=0.252 Sum_probs=99.6
Q ss_pred hhhhHHHHHHHHHHHHHHcCCeEEEEecchhHHHHHHHHHhhhcC---C---ceEEEEeCCCCHHHHHHHHHHHhcCCCc
Q 042857 1068 KASAKLTLLHSMLKVLYKEGHRVLIFSQMTKLLDILEDYLNIEFG---P---KTYERVDGSVSVGDRQAAITRFNQDKSR 1141 (1404)
Q Consensus 1068 ~~SgKl~~L~kLL~kl~~~G~KVLIFSq~~~~LDiLed~L~~~f~---g---~~y~rLdGs~s~~eRq~~Id~Fn~~~s~ 1141 (1404)
+.+.|+.-..+++.++...|-|+|-||..+++.+++-...+.-|. + ..+..+.|+...++|.++-...- ++.
T Consensus 506 ~~~~~i~E~s~~~~~~i~~~~R~IAFC~~R~~CEL~~~~~R~I~~ET~~~LV~~i~SYRGGY~A~DRRKIE~~~F--~G~ 583 (1034)
T KOG4150|consen 506 EKSSKVVEVSHLFAEMVQHGLRCIAFCPSRKLCELVLCLTREILAETAPHLVEAITSYRGGYIAEDRRKIESDLF--GGK 583 (1034)
T ss_pred hhhhHHHHHHHHHHHHHHcCCcEEEeccHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCccchhhHHHHHHHhh--CCe
Confidence 357788888889999999999999999999887776544432211 0 01234568888889988865532 444
Q ss_pred eEEEeecccccccccccCCCEEEEEcCCCCHhHHHHHHHhhhccCCCCcEEEEEEeeCCCHHHHH
Q 042857 1142 FVFLLSTRSCGLGINLATADTVIIYDSDFNPHADIQAMNRAHRIGQSKRLLVYRLVVRASVEERI 1206 (1404)
Q Consensus 1142 ~VfLLSTrAgG~GINL~~AdtVIi~DsdWNP~~d~QAigRahRiGQ~k~V~VYrLvt~~TvEE~I 1206 (1404)
..-+|+|.|..+||++-..|.||.+..|.+-++..|..|||+|-... ...|| ++..+.|+...
T Consensus 584 L~giIaTNALELGIDIG~LDAVl~~GFP~S~aNl~QQ~GRAGRRNk~-SLavy-va~~~PVDQ~Y 646 (1034)
T KOG4150|consen 584 LCGIIATNALELGIDIGHLDAVLHLGFPGSIANLWQQAGRAGRRNKP-SLAVY-VAFLGPVDQYY 646 (1034)
T ss_pred eeEEEecchhhhccccccceeEEEccCchhHHHHHHHhccccccCCC-ceEEE-EEeccchhhHh
Confidence 56789999999999999999999999999999999999999997642 22222 33344455443
No 198
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=96.82 E-value=0.013 Score=67.38 Aligned_cols=122 Identities=16% Similarity=0.073 Sum_probs=75.6
Q ss_pred CCCCCHHHHHHHHHHHHhhccCCcEEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEeCCCCh----HHHHHHHHHHC
Q 042857 753 GGALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLSTM----PNWLAEFALWA 828 (1404)
Q Consensus 753 g~~L~pyQlegVnwL~~~~~~~~~~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP~Sll----~nW~rEf~kw~ 828 (1404)
|..+++-|+-|+--| ..|.|.-..+|=|||+++..+++.... .+.++=||+.+..| .+|.+.|-.++
T Consensus 75 g~~p~~vQll~~l~L------~~G~laEm~TGEGKTli~~l~a~~~AL---~G~~V~vvT~NdyLA~RD~~~~~~~y~~L 145 (266)
T PF07517_consen 75 GLRPYDVQLLGALAL------HKGRLAEMKTGEGKTLIAALPAALNAL---QGKGVHVVTSNDYLAKRDAEEMRPFYEFL 145 (266)
T ss_dssp S----HHHHHHHHHH------HTTSEEEESTTSHHHHHHHHHHHHHHT---TSS-EEEEESSHHHHHHHHHHHHHHHHHT
T ss_pred CCcccHHHHhhhhhc------ccceeEEecCCCCcHHHHHHHHHHHHH---hcCCcEEEeccHHHhhccHHHHHHHHHHh
Confidence 456788888887544 245589999999999988644433322 23468888888877 57888888888
Q ss_pred CCCcEEEEecchhHHHHHHHhhhccCCCCccccccCCCCceEEEeeHHHHHhh---------hccccCCCceEEEEcccc
Q 042857 829 PNLNVVEYHGCAKARAIIRQYEWHASDPDNLNKKTSSYKFNVLLTTYEMILAD---------SSHLRGVPWEVLVVDEGH 899 (1404)
Q Consensus 829 P~l~Vvvy~G~~~~R~~ir~~E~~~~~~~~~~~~~~~~kfdVvITTYe~l~~d---------~~~L~~i~w~lVIVDEAH 899 (1404)
++.+-...+.......... +..+|+-+|-..+.-| ......-.+.++||||+.
T Consensus 146 -Glsv~~~~~~~~~~~r~~~-----------------Y~~dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r~~~~~ivDEvD 207 (266)
T PF07517_consen 146 -GLSVGIITSDMSSEERREA-----------------YAADIVYGTNSEFGFDYLRDNLALSKNEQVQRGFDFAIVDEVD 207 (266)
T ss_dssp -T--EEEEETTTEHHHHHHH-----------------HHSSEEEEEHHHHHHHHHHHTT-SSGGG--SSSSSEEEECTHH
T ss_pred -hhccccCccccCHHHHHHH-----------------HhCcccccccchhhHHHHHHHHhhccchhccCCCCEEEEeccc
Confidence 7888777665432221112 2457888887766543 111123468899999997
Q ss_pred cc
Q 042857 900 RL 901 (1404)
Q Consensus 900 rl 901 (1404)
.+
T Consensus 208 s~ 209 (266)
T PF07517_consen 208 SI 209 (266)
T ss_dssp HH
T ss_pred eE
Confidence 65
No 199
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=96.81 E-value=0.0097 Score=66.05 Aligned_cols=149 Identities=22% Similarity=0.230 Sum_probs=72.2
Q ss_pred CCHHHHHHHHHHHHhhccCCcEEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEeCCCChHHHHHHHHHHCCCCcEEE
Q 042857 756 LFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLSTMPNWLAEFALWAPNLNVVE 835 (1404)
Q Consensus 756 L~pyQlegVnwL~~~~~~~~~~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP~Sll~nW~rEf~kw~P~l~Vvv 835 (1404)
+.+.|...++-|. ...-+++....|+|||+.|++....+... +....++|+-|..-...+ + -|.|
T Consensus 5 ~~~~Q~~~~~al~----~~~~v~~~G~AGTGKT~LA~a~Al~~v~~-g~~~kiii~Rp~v~~~~~---l-Gflp------ 69 (205)
T PF02562_consen 5 KNEEQKFALDALL----NNDLVIVNGPAGTGKTFLALAAALELVKE-GEYDKIIITRPPVEAGED---L-GFLP------ 69 (205)
T ss_dssp -SHHHHHHHHHHH----H-SEEEEE--TTSSTTHHHHHHHHHHHHT-TS-SEEEEEE-S--TT--------SS-------
T ss_pred CCHHHHHHHHHHH----hCCeEEEECCCCCcHHHHHHHHHHHHHHh-CCCcEEEEEecCCCCccc---c-ccCC------
Confidence 4578999998887 36788999999999999999999888866 444467777776544222 1 1111
Q ss_pred EecchhH------HHHHHHhhhccCCCCccccccCCCCceEEEeeHHHHHhhhccccC--CCceEEEEccccccCCCccH
Q 042857 836 YHGCAKA------RAIIRQYEWHASDPDNLNKKTSSYKFNVLLTTYEMILADSSHLRG--VPWEVLVVDEGHRLKNSGSK 907 (1404)
Q Consensus 836 y~G~~~~------R~~ir~~E~~~~~~~~~~~~~~~~kfdVvITTYe~l~~d~~~L~~--i~w~lVIVDEAHrlKN~~Sk 907 (1404)
|+... +.....++..+.. ........ ...|-+.+. .+++. ++..+|||||||++. ...
T Consensus 70 --G~~~eK~~p~~~p~~d~l~~~~~~-~~~~~~~~--~~~Ie~~~~-------~~iRGrt~~~~~iIvDEaQN~t--~~~ 135 (205)
T PF02562_consen 70 --GDLEEKMEPYLRPIYDALEELFGK-EKLEELIQ--NGKIEIEPL-------AFIRGRTFDNAFIIVDEAQNLT--PEE 135 (205)
T ss_dssp ----------TTTHHHHHHHTTTS-T-TCHHHHHH--TTSEEEEEG-------GGGTT--B-SEEEEE-SGGG----HHH
T ss_pred --CCHHHHHHHHHHHHHHHHHHHhCh-HhHHHHhh--cCeEEEEeh-------hhhcCccccceEEEEecccCCC--HHH
Confidence 11111 1111112211110 00000000 111222222 33433 345899999999985 356
Q ss_pred HHHHHhhcccccEEEEeccCCCCChH
Q 042857 908 LFSLLNSFSFQHRVLLTGTPLQNNIG 933 (1404)
Q Consensus 908 ~~~~L~~l~~~~rLLLTGTPlqNnl~ 933 (1404)
+...+.++....++.++|-|.|.++.
T Consensus 136 ~k~ilTR~g~~skii~~GD~~Q~D~~ 161 (205)
T PF02562_consen 136 LKMILTRIGEGSKIIITGDPSQIDLP 161 (205)
T ss_dssp HHHHHTTB-TT-EEEEEE--------
T ss_pred HHHHHcccCCCcEEEEecCceeecCC
Confidence 67778888889999999999887654
No 200
>KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only]
Probab=96.74 E-value=0.00086 Score=88.09 Aligned_cols=51 Identities=31% Similarity=0.772 Sum_probs=42.3
Q ss_pred ccccccccccCCC-----ceEEcCCCCCcccccccCCCCCCCCCCCccCccccccccc
Q 042857 73 GYYYECVICDLGG-----NLLCCDSCPRTYHLQCLDPPLKRIPNGKWQCPKCTQKNDQ 125 (1404)
Q Consensus 73 ~~~~~C~~C~~~g-----~ll~Cd~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~~~~ 125 (1404)
..+.+|.+|.++. .+|+||.|+.++|++|++ ..-+|+|.|.|..|......
T Consensus 217 ~~D~~C~iC~~~~~~n~n~ivfCD~Cnl~VHq~Cyg--i~~ipeg~WlCr~Cl~s~~~ 272 (1051)
T KOG0955|consen 217 EEDAVCCICLDGECQNSNVIVFCDGCNLAVHQECYG--IPFIPEGQWLCRRCLQSPQR 272 (1051)
T ss_pred CCCccceeecccccCCCceEEEcCCCcchhhhhccC--CCCCCCCcEeehhhccCcCc
Confidence 4556799988753 399999999999999999 55699999999999976443
No 201
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=96.54 E-value=0.011 Score=75.43 Aligned_cols=133 Identities=20% Similarity=0.202 Sum_probs=86.5
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEeCCCChHH--------HHHHH-HHHCCC--CcEEEEecchhHH
Q 042857 775 KNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLSTMPN--------WLAEF-ALWAPN--LNVVEYHGCAKAR 843 (1404)
Q Consensus 775 ~~~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP~Sll~n--------W~rEf-~kw~P~--l~Vvvy~G~~~~R 843 (1404)
.++=+-.|+|+|||.+.+-.+..|.+.++.. .|+||||.-.+.- -.+.| ...+.+ +..++|..+.
T Consensus 75 lNiDI~METGTGKTy~YlrtmfeLhk~YG~~-KFIivVPs~AIkeGv~~~s~~~~ehF~k~~Yent~~e~~i~~~~~--- 150 (985)
T COG3587 75 LNIDILMETGTGKTYTYLRTMFELHKKYGLF-KFIIVVPSLAIKEGVFLTSKETTEHFFKSEYENTRLESYIYDEDI--- 150 (985)
T ss_pred ceeeEEEecCCCceeeHHHHHHHHHHHhCce-eEEEEeccHHHHhhhHHHHHHHHHHHhhhhccCcceeEEeechHH---
Confidence 4555778999999999999999998777665 7999999855411 12223 333332 3334443111
Q ss_pred HHHHHhhhccCCCCccccccCCCCceEEEeeHHHHHhh---hcc---------------------ccCCCceEEEEcccc
Q 042857 844 AIIRQYEWHASDPDNLNKKTSSYKFNVLLTTYEMILAD---SSH---------------------LRGVPWEVLVVDEGH 899 (1404)
Q Consensus 844 ~~ir~~E~~~~~~~~~~~~~~~~kfdVvITTYe~l~~d---~~~---------------------L~~i~w~lVIVDEAH 899 (1404)
.... ........|+|.+...+.++ ... |...+ -+|||||-|
T Consensus 151 ---~~~~-----------~~~~~~~~vLl~~~~Afnk~~inan~iN~~s~~~~~~~~~~~spvd~la~~r-PIvIvDEPh 215 (985)
T COG3587 151 ---EKFK-----------FKSNNKPCVLLIFVSAFNKEEINANMINSESMENTNLFNGATSPVDALASMR-PIVIVDEPH 215 (985)
T ss_pred ---HHHh-----------hccCCCceEEEEehhhhccccccccccchhhhcccCccccccCHHHHHHhcC-CEEEecChh
Confidence 0111 11234567888888777665 211 11111 389999999
Q ss_pred ccCCCccHHHHHHhhcccccEEEEeccC
Q 042857 900 RLKNSGSKLFSLLNSFSFQHRVLLTGTP 927 (1404)
Q Consensus 900 rlKN~~Sk~~~~L~~l~~~~rLLLTGTP 927 (1404)
++... .+.+.++..+.....|=..||-
T Consensus 216 ~f~~~-~k~~~~i~~l~pl~ilRfgATf 242 (985)
T COG3587 216 RFLGD-DKTYGAIKQLNPLLILRFGATF 242 (985)
T ss_pred hcccc-hHHHHHHHhhCceEEEEecccc
Confidence 99865 7899999999988888788884
No 202
>PRK10536 hypothetical protein; Provisional
Probab=96.53 E-value=0.027 Score=64.45 Aligned_cols=152 Identities=13% Similarity=0.103 Sum_probs=84.7
Q ss_pred CCHHHHHHHHHHHHhhccCCcEEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEeCCCChHHHHHHHHHHCCCCcEEE
Q 042857 756 LFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLSTMPNWLAEFALWAPNLNVVE 835 (1404)
Q Consensus 756 L~pyQlegVnwL~~~~~~~~~~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP~Sll~nW~rEf~kw~P~l~Vvv 835 (1404)
+...|...+.+|.. ...+++..+.|+|||..++++......... ...++|+=|.-.. .|.-.|.|.
T Consensus 60 ~n~~Q~~~l~al~~----~~lV~i~G~aGTGKT~La~a~a~~~l~~~~-~~kIiI~RP~v~~----ge~LGfLPG----- 125 (262)
T PRK10536 60 RNEAQAHYLKAIES----KQLIFATGEAGCGKTWISAAKAAEALIHKD-VDRIIVTRPVLQA----DEDLGFLPG----- 125 (262)
T ss_pred CCHHHHHHHHHHhc----CCeEEEECCCCCCHHHHHHHHHHHHHhcCC-eeEEEEeCCCCCc----hhhhCcCCC-----
Confidence 56788888887754 568889999999999999999987653332 3233443343322 233333332
Q ss_pred EecchhHH------HHHHHhhhccCCCCccccccCCCCceEEEeeHHHHHhhhccccCCCceEEEEccccccCCCccHHH
Q 042857 836 YHGCAKAR------AIIRQYEWHASDPDNLNKKTSSYKFNVLLTTYEMILADSSHLRGVPWEVLVVDEGHRLKNSGSKLF 909 (1404)
Q Consensus 836 y~G~~~~R------~~ir~~E~~~~~~~~~~~~~~~~kfdVvITTYe~l~~d~~~L~~i~w~lVIVDEAHrlKN~~Sk~~ 909 (1404)
+..++ .+....+..... ...........-.|-|.+...++- . .++-++|||||||++.- ....
T Consensus 126 ---~~~eK~~p~~~pi~D~L~~~~~~-~~~~~~~~~~~~~Iei~~l~ymRG-r----tl~~~~vIvDEaqn~~~--~~~k 194 (262)
T PRK10536 126 ---DIAEKFAPYFRPVYDVLVRRLGA-SFMQYCLRPEIGKVEIAPFAYMRG-R----TFENAVVILDEAQNVTA--AQMK 194 (262)
T ss_pred ---CHHHHHHHHHHHHHHHHHHHhCh-HHHHHHHHhccCcEEEecHHHhcC-C----cccCCEEEEechhcCCH--HHHH
Confidence 11111 111111110000 000000000011244444333321 1 13447999999999953 5667
Q ss_pred HHHhhcccccEEEEeccCCCCCh
Q 042857 910 SLLNSFSFQHRVLLTGTPLQNNI 932 (1404)
Q Consensus 910 ~~L~~l~~~~rLLLTGTPlqNnl 932 (1404)
..+..+....+++++|-|-|.++
T Consensus 195 ~~ltR~g~~sk~v~~GD~~QiD~ 217 (262)
T PRK10536 195 MFLTRLGENVTVIVNGDITQCDL 217 (262)
T ss_pred HHHhhcCCCCEEEEeCChhhccC
Confidence 77888899999999999977654
No 203
>KOG1473 consensus Nucleosome remodeling factor, subunit NURF301/BPTF [Chromatin structure and dynamics; Transcription]
Probab=96.42 E-value=0.0014 Score=84.10 Aligned_cols=50 Identities=38% Similarity=0.957 Sum_probs=45.7
Q ss_pred cccccccccccCCCceEEcCCCCCcccccccCCCCCCCCCCCccCccccc
Q 042857 72 DGYYYECVICDLGGNLLCCDSCPRTYHLQCLDPPLKRIPNGKWQCPKCTQ 121 (1404)
Q Consensus 72 d~~~~~C~~C~~~g~ll~Cd~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~ 121 (1404)
-.+++.|.+|.+.|+++||..|++.||+.|+.||...+|..+|-|-.|..
T Consensus 341 ~~~ddhcrf~~d~~~~lc~Et~prvvhlEcv~hP~~~~~s~~~e~evc~~ 390 (1414)
T KOG1473|consen 341 IEYDDHCRFCHDLGDLLCCETCPRVVHLECVFHPRFAVPSAFWECEVCNI 390 (1414)
T ss_pred eeecccccccCcccceeecccCCceEEeeecCCccccCCCccchhhhhhh
Confidence 34455799999999999999999999999999999999999999999973
No 204
>KOG0954 consensus PHD finger protein [General function prediction only]
Probab=96.29 E-value=0.0015 Score=81.06 Aligned_cols=47 Identities=26% Similarity=0.745 Sum_probs=40.8
Q ss_pred cccccccccCC-----CceEEcCCCCCcccccccCCCCCCCCCCCccCcccccc
Q 042857 74 YYYECVICDLG-----GNLLCCDSCPRTYHLQCLDPPLKRIPNGKWQCPKCTQK 122 (1404)
Q Consensus 74 ~~~~C~~C~~~-----g~ll~Cd~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~ 122 (1404)
.+..|.+|+.+ .+|++||.|.-..|+-|.+ +..+|.|.|.|..|...
T Consensus 270 edviCDvCrspD~e~~neMVfCd~Cn~cVHqaCyG--Ile~p~gpWlCr~Calg 321 (893)
T KOG0954|consen 270 EDVICDVCRSPDSEEANEMVFCDKCNICVHQACYG--ILEVPEGPWLCRTCALG 321 (893)
T ss_pred ccceeceecCCCccccceeEEeccchhHHHHhhhc--eeecCCCCeeehhcccc
Confidence 34468888876 3599999999999999999 99999999999999754
No 205
>COG5141 PHD zinc finger-containing protein [General function prediction only]
Probab=96.19 E-value=0.0022 Score=76.13 Aligned_cols=52 Identities=29% Similarity=0.738 Sum_probs=43.1
Q ss_pred CCCcccccccccccCCCc-----eEEcCCCCCcccccccCCCCCCCCCCCccCcccccc
Q 042857 69 KGNDGYYYECVICDLGGN-----LLCCDSCPRTYHLQCLDPPLKRIPNGKWQCPKCTQK 122 (1404)
Q Consensus 69 ~~~d~~~~~C~~C~~~g~-----ll~Cd~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~ 122 (1404)
...|.-+..|.+|..... +++||+|+-+.|..|.+ +.-+|+|.|+|..|.-.
T Consensus 187 ~~~d~~d~~C~~c~~t~~eN~naiVfCdgC~i~VHq~CYG--I~f~peG~WlCrkCi~~ 243 (669)
T COG5141 187 EPSDEFDDICTKCTSTHNENSNAIVFCDGCEICVHQSCYG--IQFLPEGFWLCRKCIYG 243 (669)
T ss_pred CCchhhhhhhHhccccccCCcceEEEecCcchhhhhhccc--ceecCcchhhhhhhccc
Confidence 345556778888876432 99999999999999999 77899999999999854
No 206
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=96.00 E-value=0.06 Score=59.39 Aligned_cols=58 Identities=22% Similarity=0.192 Sum_probs=38.9
Q ss_pred CCCHHHHHHHHHHHHhhccCCcEEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEeCCCCh
Q 042857 755 ALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLSTM 817 (1404)
Q Consensus 755 ~L~pyQlegVnwL~~~~~~~~~~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP~Sll 817 (1404)
+|.+-|.+++..++. ...+-.+|....|.|||.....++..+. .. ..++++++|+...
T Consensus 1 ~L~~~Q~~a~~~~l~--~~~~~~~l~G~aGtGKT~~l~~~~~~~~-~~--g~~v~~~apT~~A 58 (196)
T PF13604_consen 1 TLNEEQREAVRAILT--SGDRVSVLQGPAGTGKTTLLKALAEALE-AA--GKRVIGLAPTNKA 58 (196)
T ss_dssp -S-HHHHHHHHHHHH--CTCSEEEEEESTTSTHHHHHHHHHHHHH-HT--T--EEEEESSHHH
T ss_pred CCCHHHHHHHHHHHh--cCCeEEEEEECCCCCHHHHHHHHHHHHH-hC--CCeEEEECCcHHH
Confidence 477899999998865 2234567888999999987655544443 32 3578999997654
No 207
>KOG0956 consensus PHD finger protein AF10 [General function prediction only]
Probab=96.00 E-value=0.0026 Score=78.28 Aligned_cols=42 Identities=33% Similarity=0.986 Sum_probs=36.9
Q ss_pred cccccCCC-----ceEEcC--CCCCcccccccCCCCCCCCCCCccCccccc
Q 042857 78 CVICDLGG-----NLLCCD--SCPRTYHLQCLDPPLKRIPNGKWQCPKCTQ 121 (1404)
Q Consensus 78 C~~C~~~g-----~ll~Cd--~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~ 121 (1404)
|.||.+.. -|+.|| .|.-+.|.-|++ +..+|.|.|||..|-.
T Consensus 8 CCVCSDErGWaeNPLVYCDG~nCsVAVHQaCYG--IvqVPtGpWfCrKCes 56 (900)
T KOG0956|consen 8 CCVCSDERGWAENPLVYCDGHNCSVAVHQACYG--IVQVPTGPWFCRKCES 56 (900)
T ss_pred eeeecCcCCCccCceeeecCCCceeeeehhcce--eEecCCCchhhhhhhh
Confidence 88887742 299999 599999999999 8999999999999964
No 208
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=95.74 E-value=0.032 Score=66.92 Aligned_cols=46 Identities=26% Similarity=0.258 Sum_probs=33.0
Q ss_pred EEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEeCCCChHHHHHH
Q 042857 777 VILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLSTMPNWLAE 823 (1404)
Q Consensus 777 ~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP~Sll~nW~rE 823 (1404)
.|+-...|+|||+.++.++..+.. .......+++|+...+.+..++
T Consensus 4 ~~I~G~aGTGKTvla~~l~~~l~~-~~~~~~~~~l~~n~~l~~~l~~ 49 (352)
T PF09848_consen 4 ILITGGAGTGKTVLALNLAKELQN-SEEGKKVLYLCGNHPLRNKLRE 49 (352)
T ss_pred EEEEecCCcCHHHHHHHHHHHhhc-cccCCceEEEEecchHHHHHHH
Confidence 467778999999999999988721 2233457888888777665443
No 209
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=95.64 E-value=0.02 Score=61.41 Aligned_cols=102 Identities=23% Similarity=0.259 Sum_probs=65.7
Q ss_pred HHcCCeEEEEecchhHHHHHHHHHhhhcC--CceEEEEeCCCCHHHHHHHHHHHhcCCCceEEEeecc--cccccccccC
Q 042857 1084 YKEGHRVLIFSQMTKLLDILEDYLNIEFG--PKTYERVDGSVSVGDRQAAITRFNQDKSRFVFLLSTR--SCGLGINLAT 1159 (1404)
Q Consensus 1084 ~~~G~KVLIFSq~~~~LDiLed~L~~~f~--g~~y~rLdGs~s~~eRq~~Id~Fn~~~s~~VfLLSTr--AgG~GINL~~ 1159 (1404)
...+.++|||+..-..++.+.+++..... ++.+ ...+ ...+..+++.|..+... +|+++. ...+|||+..
T Consensus 6 ~~~~g~~lv~f~Sy~~l~~~~~~~~~~~~~~~~~v-~~q~---~~~~~~~l~~~~~~~~~--il~~v~~g~~~EGiD~~~ 79 (167)
T PF13307_consen 6 SAVPGGVLVFFPSYRRLEKVYERLKERLEEKGIPV-FVQG---SKSRDELLEEFKRGEGA--ILLAVAGGSFSEGIDFPG 79 (167)
T ss_dssp HCCSSEEEEEESSHHHHHHHHTT-TSS-E-ETSCE-EEST---CCHHHHHHHHHCCSSSE--EEEEETTSCCGSSS--EC
T ss_pred hcCCCCEEEEeCCHHHHHHHHHHHHhhccccccee-eecC---cchHHHHHHHHHhccCe--EEEEEecccEEEeecCCC
Confidence 34568999999999999999999875421 2222 2222 45788999999886555 666776 8899999975
Q ss_pred --CCEEEEEcCCC-CHh-----------------------------HHHHHHHhhhccCCCCcE
Q 042857 1160 --ADTVIIYDSDF-NPH-----------------------------ADIQAMNRAHRIGQSKRL 1191 (1404)
Q Consensus 1160 --AdtVIi~DsdW-NP~-----------------------------~d~QAigRahRiGQ~k~V 1191 (1404)
+..|||.-.|+ +|. ...||+||+.|-.+..-+
T Consensus 80 ~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~Qa~GR~iR~~~D~g~ 143 (167)
T PF13307_consen 80 DLLRAVIIVGLPFPPPSDPLVQAKREYLDKQGKNPFRDWYLPPAIRKLKQAIGRLIRSEDDYGV 143 (167)
T ss_dssp ESEEEEEEES-----TTCHHHHHHHHHHHHCCTTCHHHHTHHHHHHHHHHHHHCC--STT-EEE
T ss_pred chhheeeecCCCCCCCCCHHHHHHHHHHHHHhccchhhHhhHHHHHHHhhhcCcceeccCCcEE
Confidence 88999999886 232 124889999987664443
No 210
>KOG2748 consensus Uncharacterized conserved protein, contains chromo domain [Chromatin structure and dynamics]
Probab=95.58 E-value=0.0069 Score=69.96 Aligned_cols=35 Identities=34% Similarity=0.687 Sum_probs=27.5
Q ss_pred eEEEEEEecCccccccccCCHHHHHHHHHHHHHHHHH
Q 042857 611 SYEFLVKWVGKSNIHNSWIPESQLKVLAKRKLENYKA 647 (1404)
Q Consensus 611 ~~eylVKw~~~Sy~h~~Wv~e~~l~~~~~~~l~~~~~ 647 (1404)
..||||||+|+|+.|++|.+|+-|. .+++|.-|..
T Consensus 25 rvEYlVKWkGWs~kyNTWEPEENIL--DpRLi~AFe~ 59 (369)
T KOG2748|consen 25 RVEYLVKWKGWSQKYNTWEPEENIL--DPRLIAAFEQ 59 (369)
T ss_pred ceEEEEEecccccccCccCcccccc--CHHHHHHHHh
Confidence 4799999999999999999998764 3455555543
No 211
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=95.51 E-value=0.016 Score=58.49 Aligned_cols=116 Identities=22% Similarity=0.225 Sum_probs=59.3
Q ss_pred cCCcEEEEcCCCchHHHHHHHHHHHHHhhcc--CCCc-EEEEeCCCC-hHHHHHHHHHHC-CCCcEEEEecchhHHHHHH
Q 042857 773 KSKNVILADEMGLGKTVSACAFISSLYCEFK--AKLP-CLVLVPLST-MPNWLAEFALWA-PNLNVVEYHGCAKARAIIR 847 (1404)
Q Consensus 773 ~~~~~ILADEMGLGKTiqaIa~L~~L~~~~~--~~gP-~LIVvP~Sl-l~nW~rEf~kw~-P~l~Vvvy~G~~~~R~~ir 847 (1404)
.++.+++..+.|.|||..+-.++..+..... ...+ +.|-+|... ...+..++..-+ ..... +
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~----~--------- 69 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKS----R--------- 69 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSS----T---------
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccc----c---------
Confidence 3456789999999999998888877653211 1112 334444433 344444433221 00000 0
Q ss_pred HhhhccCCCCccccccCCCCceEEEeeHHHHHhhhccccCCCceEEEEccccccCCCccHHHHHHhhc--ccccEEEEec
Q 042857 848 QYEWHASDPDNLNKKTSSYKFNVLLTTYEMILADSSHLRGVPWEVLVVDEGHRLKNSGSKLFSLLNSF--SFQHRVLLTG 925 (1404)
Q Consensus 848 ~~E~~~~~~~~~~~~~~~~kfdVvITTYe~l~~d~~~L~~i~w~lVIVDEAHrlKN~~Sk~~~~L~~l--~~~~rLLLTG 925 (1404)
.+..+.+..-...+....-.+|||||+|++. .......++.+ .....++|.|
T Consensus 70 ------------------------~~~~~l~~~~~~~l~~~~~~~lviDe~~~l~--~~~~l~~l~~l~~~~~~~vvl~G 123 (131)
T PF13401_consen 70 ------------------------QTSDELRSLLIDALDRRRVVLLVIDEADHLF--SDEFLEFLRSLLNESNIKVVLVG 123 (131)
T ss_dssp ------------------------S-HHHHHHHHHHHHHHCTEEEEEEETTHHHH--THHHHHHHHHHTCSCBEEEEEEE
T ss_pred ------------------------CCHHHHHHHHHHHHHhcCCeEEEEeChHhcC--CHHHHHHHHHHHhCCCCeEEEEE
Confidence 0011111111122222233689999999994 24555666555 4666799999
Q ss_pred cC
Q 042857 926 TP 927 (1404)
Q Consensus 926 TP 927 (1404)
||
T Consensus 124 ~~ 125 (131)
T PF13401_consen 124 TP 125 (131)
T ss_dssp SS
T ss_pred Ch
Confidence 99
No 212
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=95.41 E-value=0.13 Score=51.68 Aligned_cols=53 Identities=30% Similarity=0.390 Sum_probs=32.4
Q ss_pred HHHHHHHhhcc--CCcEEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEeCCCChH
Q 042857 763 ALNWLRKCWHK--SKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLSTMP 818 (1404)
Q Consensus 763 gVnwL~~~~~~--~~~~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP~Sll~ 818 (1404)
.++.+...... +...+|..+.|.|||..+-.++..+. ....+++.+.......
T Consensus 6 ~~~~i~~~~~~~~~~~v~i~G~~G~GKT~l~~~i~~~~~---~~~~~v~~~~~~~~~~ 60 (151)
T cd00009 6 AIEALREALELPPPKNLLLYGPPGTGKTTLARAIANELF---RPGAPFLYLNASDLLE 60 (151)
T ss_pred HHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHhh---cCCCCeEEEehhhhhh
Confidence 34444444433 67789999999999987766666553 2234555554444333
No 213
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=95.24 E-value=0.094 Score=67.79 Aligned_cols=75 Identities=25% Similarity=0.276 Sum_probs=55.5
Q ss_pred CCCCHHHHHHHHHHHHhhccCCcEEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEeCCCCh-HHHHHHHHHHCCCCc
Q 042857 754 GALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLSTM-PNWLAEFALWAPNLN 832 (1404)
Q Consensus 754 ~~L~pyQlegVnwL~~~~~~~~~~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP~Sll-~nW~rEf~kw~P~l~ 832 (1404)
..|-+.|..+|..++. .....|+....|+|||.+++.++..+...+ .++||++|...- .+....+... +++
T Consensus 156 ~~ln~~Q~~Av~~~l~---~~~~~lI~GpPGTGKT~t~~~ii~~~~~~g---~~VLv~a~sn~Avd~l~e~l~~~--~~~ 227 (637)
T TIGR00376 156 PNLNESQKEAVSFALS---SKDLFLIHGPPGTGKTRTLVELIRQLVKRG---LRVLVTAPSNIAVDNLLERLALC--DQK 227 (637)
T ss_pred CCCCHHHHHHHHHHhc---CCCeEEEEcCCCCCHHHHHHHHHHHHHHcC---CCEEEEcCcHHHHHHHHHHHHhC--CCc
Confidence 4689999999987644 346788999999999999999888876532 379999998754 6776666542 344
Q ss_pred EEEE
Q 042857 833 VVEY 836 (1404)
Q Consensus 833 Vvvy 836 (1404)
++-.
T Consensus 228 vvRl 231 (637)
T TIGR00376 228 IVRL 231 (637)
T ss_pred EEEe
Confidence 4443
No 214
>PF13831 PHD_2: PHD-finger; PDB: 2L43_A 2KU3_A.
Probab=94.82 E-value=0.0073 Score=48.50 Aligned_cols=34 Identities=35% Similarity=1.057 Sum_probs=20.3
Q ss_pred CceEEcCCCCCcccccccCCCCCCCCCC-CccCcccc
Q 042857 85 GNLLCCDSCPRTYHLQCLDPPLKRIPNG-KWQCPKCT 120 (1404)
Q Consensus 85 g~ll~Cd~C~~~~H~~Cl~Ppl~~~P~g-~W~C~~C~ 120 (1404)
..||.|+.|.-..|..|.+ +..+|.+ +|+|..|.
T Consensus 2 n~ll~C~~C~v~VH~~CYG--v~~~~~~~~W~C~~C~ 36 (36)
T PF13831_consen 2 NPLLFCDNCNVAVHQSCYG--VSEVPDGDDWLCDRCE 36 (36)
T ss_dssp CEEEE-SSS--EEEHHHHT---SS--SS-----HHH-
T ss_pred CceEEeCCCCCcCChhhCC--cccCCCCCcEECCcCC
Confidence 3589999999999999999 7778877 89999884
No 215
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=94.75 E-value=0.043 Score=72.95 Aligned_cols=178 Identities=25% Similarity=0.392 Sum_probs=99.8
Q ss_pred CCCHHHHHHHHHHHHhhccCCcEEEEcCCCch--HHHHHHHHHHHHHhhccCCCcEEEEeCCCChHHHHHHHHHHCCCCc
Q 042857 755 ALFPHQLEALNWLRKCWHKSKNVILADEMGLG--KTVSACAFISSLYCEFKAKLPCLVLVPLSTMPNWLAEFALWAPNLN 832 (1404)
Q Consensus 755 ~L~pyQlegVnwL~~~~~~~~~~ILADEMGLG--KTiqaIa~L~~L~~~~~~~gP~LIVvP~Sll~nW~rEf~kw~P~l~ 832 (1404)
.+.++|...+.-..... .....++++.|+| ||+.+..+....... ....+.++++|.....+|..+...++ ...
T Consensus 84 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~e~~~~~-~~~ 159 (866)
T COG0553 84 ILIPHQLDIALEVLNEL--ALRVLIADEVGLGDLKTIEAGAILKELLLR-GEIKRVLILVPKTLRAQWVVELLEKF-NIR 159 (866)
T ss_pred ccCcchhhhhhhhhhhh--hhchhhcccccccccccccccccchHhhhh-hhhccceeccchHHHHHHHHHhhhhc-ccc
Confidence 46667766654332221 2238899999999 899887776665433 33447899999888899999877663 111
Q ss_pred EEEE--ecchhHHHHHHHhhhccCCCCccccccCCCCceEEEeeHHHHHhh----hccccCCCc---eEEEEccccccCC
Q 042857 833 VVEY--HGCAKARAIIRQYEWHASDPDNLNKKTSSYKFNVLLTTYEMILAD----SSHLRGVPW---EVLVVDEGHRLKN 903 (1404)
Q Consensus 833 Vvvy--~G~~~~R~~ir~~E~~~~~~~~~~~~~~~~kfdVvITTYe~l~~d----~~~L~~i~w---~lVIVDEAHrlKN 903 (1404)
..+. .+........+. . ........++...+..... ...+....| +++++||+|.+.+
T Consensus 160 ~~~~~~~~~~~~~~~~~~----------~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (866)
T COG0553 160 LAVLDKEGLRYLLKQYDA----------Y---NPFSTEDLVLISLDLAKRSDSKRREALLEAEWGERDLLVIDEAHNLGS 226 (866)
T ss_pred chhhhhhhhhhhhhhhcc----------c---ccccchhhhhhhhhhhhhhhhhhhhhhhcccccchhhhhcchHhhccc
Confidence 1111 110100000000 0 0000001033333333322 223344456 8999999999877
Q ss_pred Cc---------cHHHHHHhhcccc--------cEEEEeccCCCCChHHHHHHhhhhCCCCCCC
Q 042857 904 SG---------SKLFSLLNSFSFQ--------HRVLLTGTPLQNNIGEMYNLLNFLQPASFPS 949 (1404)
Q Consensus 904 ~~---------Sk~~~~L~~l~~~--------~rLLLTGTPlqNnl~EL~sLL~fL~P~~f~s 949 (1404)
.. ...+..+...... ...++++||.+....+++....++.+..+.+
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (866)
T COG0553 227 SEGTRKLAPLETLEYELLKQLAEKIPSKLLDLKVLLLSATPEQLKEEDLFARLRLLDPLRLAD 289 (866)
T ss_pred ccccccccchhhhHHHHHHHHhhcccccccccchhhhccchhhccccccchhhhhccccchhh
Confidence 42 2333434333211 2247899999998888887777777766655
No 216
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=94.72 E-value=0.23 Score=65.14 Aligned_cols=135 Identities=26% Similarity=0.255 Sum_probs=83.2
Q ss_pred CCCCCHHHHHHHHHHHHhhccCCcEEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEeCCCChHHHHHHHHHHCCCCc
Q 042857 753 GGALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLSTMPNWLAEFALWAPNLN 832 (1404)
Q Consensus 753 g~~L~pyQlegVnwL~~~~~~~~~~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP~Sll~nW~rEf~kw~P~l~ 832 (1404)
+..|.+-|.+++..+.. ..-.+|....|+|||..+-+++..+... +...++++++|+..-.....|.. ..
T Consensus 321 ~~~l~~~Q~~Ai~~~~~----~~~~iitGgpGTGKTt~l~~i~~~~~~~-~~~~~v~l~ApTg~AA~~L~e~~----g~- 390 (720)
T TIGR01448 321 RKGLSEEQKQALDTAIQ----HKVVILTGGPGTGKTTITRAIIELAEEL-GGLLPVGLAAPTGRAAKRLGEVT----GL- 390 (720)
T ss_pred CCCCCHHHHHHHHHHHh----CCeEEEECCCCCCHHHHHHHHHHHHHHc-CCCceEEEEeCchHHHHHHHHhc----CC-
Confidence 45799999999987743 5678999999999998877766655432 21247888899877665544421 11
Q ss_pred EEEEecchhHHHHHHHhhhccCCCCccccccCCCCceEEEeeHHHHHhhhccccCCCceEEEEccccccCCCccHHHHHH
Q 042857 833 VVEYHGCAKARAIIRQYEWHASDPDNLNKKTSSYKFNVLLTTYEMILADSSHLRGVPWEVLVVDEGHRLKNSGSKLFSLL 912 (1404)
Q Consensus 833 Vvvy~G~~~~R~~ir~~E~~~~~~~~~~~~~~~~kfdVvITTYe~l~~d~~~L~~i~w~lVIVDEAHrlKN~~Sk~~~~L 912 (1404)
....+.+.+.+... . . .. .... .....++||||||+.+- ...+...+
T Consensus 391 --------~a~Tih~lL~~~~~------------~---~---~~---~~~~--~~~~~~llIvDEaSMvd--~~~~~~Ll 437 (720)
T TIGR01448 391 --------TASTIHRLLGYGPD------------T---F---RH---NHLE--DPIDCDLLIVDESSMMD--TWLALSLL 437 (720)
T ss_pred --------ccccHHHHhhccCC------------c---c---ch---hhhh--ccccCCEEEEeccccCC--HHHHHHHH
Confidence 01111111111000 0 0 00 0000 12456899999999984 23456666
Q ss_pred hhcccccEEEEeccCCCC
Q 042857 913 NSFSFQHRVLLTGTPLQN 930 (1404)
Q Consensus 913 ~~l~~~~rLLLTGTPlqN 930 (1404)
..+....+|+|-|=|-|-
T Consensus 438 ~~~~~~~rlilvGD~~QL 455 (720)
T TIGR01448 438 AALPDHARLLLVGDTDQL 455 (720)
T ss_pred HhCCCCCEEEEECccccc
Confidence 777778899999988654
No 217
>KOG4299 consensus PHD Zn-finger protein [General function prediction only]
Probab=94.59 E-value=0.043 Score=68.14 Aligned_cols=48 Identities=44% Similarity=1.089 Sum_probs=40.3
Q ss_pred ccccccccCCCceEEcCCCCCcccccccCCCCCCC-CCCCccCcccccc
Q 042857 75 YYECVICDLGGNLLCCDSCPRTYHLQCLDPPLKRI-PNGKWQCPKCTQK 122 (1404)
Q Consensus 75 ~~~C~~C~~~g~ll~Cd~C~~~~H~~Cl~Ppl~~~-P~g~W~C~~C~~~ 122 (1404)
...|.+|..+|++++|+.|+.+||+.|..|++... +.+.|.|..|-..
T Consensus 47 ~ts~~~~~~~gn~~~~~~~~~s~h~~~~~~~~sp~~~~~~~~~~~~~~~ 95 (613)
T KOG4299|consen 47 ATSCGICKSGGNLLCCDHCPASFHLECDKPPLSPDLKGSEINCSRCPKG 95 (613)
T ss_pred hhhcchhhhcCCccccccCccccchhccCcccCcccccccccccCCCcc
Confidence 45699999999999999999999999999998732 2356888888753
No 218
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=94.55 E-value=0.1 Score=64.92 Aligned_cols=63 Identities=24% Similarity=0.250 Sum_probs=49.8
Q ss_pred CCCHHHHHHHHHHHHhhccCCcEEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEeCCCC-hHHHHHH
Q 042857 755 ALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLST-MPNWLAE 823 (1404)
Q Consensus 755 ~L~pyQlegVnwL~~~~~~~~~~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP~Sl-l~nW~rE 823 (1404)
.|-+-|..++.++.. ...-.++-...|+|||.+..-+|..+...+ ..+||.+|..+ +.|-...
T Consensus 185 ~ln~SQk~Av~~~~~---~k~l~~I~GPPGTGKT~TlvEiI~qlvk~~---k~VLVcaPSn~AVdNiver 248 (649)
T KOG1803|consen 185 NLNSSQKAAVSFAIN---NKDLLIIHGPPGTGKTRTLVEIISQLVKQK---KRVLVCAPSNVAVDNIVER 248 (649)
T ss_pred cccHHHHHHHHHHhc---cCCceEeeCCCCCCceeeHHHHHHHHHHcC---CeEEEEcCchHHHHHHHHH
Confidence 578899999988765 235678888999999999999998887543 56899999864 5777664
No 219
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=93.93 E-value=0.38 Score=62.35 Aligned_cols=42 Identities=24% Similarity=0.407 Sum_probs=30.1
Q ss_pred HHHHHHHHHHhhccCC--c-EEEEcCCCchHHHHHHHHHHHHHhh
Q 042857 760 QLEALNWLRKCWHKSK--N-VILADEMGLGKTVSACAFISSLYCE 801 (1404)
Q Consensus 760 QlegVnwL~~~~~~~~--~-~ILADEMGLGKTiqaIa~L~~L~~~ 801 (1404)
|...+..|...+..++ + .||...-|+|||..+..|...+..+
T Consensus 21 Qe~Vv~~L~~aL~~gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe 65 (830)
T PRK07003 21 QEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCE 65 (830)
T ss_pred cHHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCc
Confidence 4455555555555442 3 4899999999999999998888654
No 220
>PRK04296 thymidine kinase; Provisional
Probab=93.81 E-value=0.4 Score=52.59 Aligned_cols=34 Identities=18% Similarity=0.170 Sum_probs=25.4
Q ss_pred EEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEeC
Q 042857 777 VILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVP 813 (1404)
Q Consensus 777 ~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP 813 (1404)
.++..+||.|||..++.++..+... ..+++|+.|
T Consensus 5 ~litG~~GsGKTT~~l~~~~~~~~~---g~~v~i~k~ 38 (190)
T PRK04296 5 EFIYGAMNSGKSTELLQRAYNYEER---GMKVLVFKP 38 (190)
T ss_pred EEEECCCCCHHHHHHHHHHHHHHHc---CCeEEEEec
Confidence 4678899999999999888766432 345777755
No 221
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.47 E-value=0.54 Score=60.24 Aligned_cols=40 Identities=20% Similarity=0.355 Sum_probs=27.8
Q ss_pred HHHHHHHHhhccC---CcEEEEcCCCchHHHHHHHHHHHHHhh
Q 042857 762 EALNWLRKCWHKS---KNVILADEMGLGKTVSACAFISSLYCE 801 (1404)
Q Consensus 762 egVnwL~~~~~~~---~~~ILADEMGLGKTiqaIa~L~~L~~~ 801 (1404)
..+..|.+.+..+ ...||....|+|||..+..|...+...
T Consensus 23 ~vv~~L~~al~~gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~ 65 (700)
T PRK12323 23 HVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSLNCT 65 (700)
T ss_pred HHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 3333444444333 234889999999999999999888753
No 222
>PLN03025 replication factor C subunit; Provisional
Probab=93.30 E-value=0.97 Score=53.63 Aligned_cols=40 Identities=30% Similarity=0.344 Sum_probs=28.0
Q ss_pred HHHHHHHHHHhhccC--CcEEEEcCCCchHHHHHHHHHHHHH
Q 042857 760 QLEALNWLRKCWHKS--KNVILADEMGLGKTVSACAFISSLY 799 (1404)
Q Consensus 760 QlegVnwL~~~~~~~--~~~ILADEMGLGKTiqaIa~L~~L~ 799 (1404)
|.+.+.+|......+ .+.||..+.|+|||..+.+++..+.
T Consensus 18 ~~~~~~~L~~~~~~~~~~~lll~Gp~G~GKTtla~~la~~l~ 59 (319)
T PLN03025 18 NEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELL 59 (319)
T ss_pred cHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHh
Confidence 334444444433333 4689999999999999999888775
No 223
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=93.20 E-value=0.57 Score=60.12 Aligned_cols=140 Identities=21% Similarity=0.213 Sum_probs=81.6
Q ss_pred HHHHHHHHHHHHhhccCCcEEEEcCCCchHHHHHHHHHHHHHhhccC--CCcEEEEeCCCChHH-HHHHHHHHCCCCcEE
Q 042857 758 PHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKA--KLPCLVLVPLSTMPN-WLAEFALWAPNLNVV 834 (1404)
Q Consensus 758 pyQlegVnwL~~~~~~~~~~ILADEMGLGKTiqaIa~L~~L~~~~~~--~gP~LIVvP~Sll~n-W~rEf~kw~P~l~Vv 834 (1404)
+.|..++..... +.-.+|....|+|||.++..++..+...... ...+++++|+.--.. ..+-+..-...+..-
T Consensus 148 ~~Qk~A~~~al~----~~~~vitGgpGTGKTt~v~~ll~~l~~~~~~~~~~~I~l~APTGkAA~rL~e~~~~~~~~l~~~ 223 (586)
T TIGR01447 148 NWQKVAVALALK----SNFSLITGGPGTGKTTTVARLLLALVKQSPKQGKLRIALAAPTGKAAARLAESLRKAVKNLAAA 223 (586)
T ss_pred HHHHHHHHHHhh----CCeEEEEcCCCCCHHHHHHHHHHHHHHhccccCCCcEEEECCcHHHHHHHHHHHHhhhcccccc
Confidence 789999877655 6788999999999999988888777654332 236889999865433 322232211111100
Q ss_pred EEecchhHHHHHHHhhhccCCCCccccccCCCCceEEEeeHHHHHhh--------hccccCCCceEEEEccccccCCCcc
Q 042857 835 EYHGCAKARAIIRQYEWHASDPDNLNKKTSSYKFNVLLTTYEMILAD--------SSHLRGVPWEVLVVDEGHRLKNSGS 906 (1404)
Q Consensus 835 vy~G~~~~R~~ir~~E~~~~~~~~~~~~~~~~kfdVvITTYe~l~~d--------~~~L~~i~w~lVIVDEAHrlKN~~S 906 (1404)
. ...... .+-..|...+... ...-...++++||||||-.+- ..
T Consensus 224 -----~---~~~~~~-------------------~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIiDEaSMvd--~~ 274 (586)
T TIGR01447 224 -----E---ALIAAL-------------------PSEAVTIHRLLGIKPDTKRFRHHERNPLPLDVLVVDEASMVD--LP 274 (586)
T ss_pred -----h---hhhhcc-------------------ccccchhhhhhcccCCcchhhhcccCCCcccEEEEcccccCC--HH
Confidence 0 000000 0000111111000 001122468999999998774 23
Q ss_pred HHHHHHhhcccccEEEEeccCCCC
Q 042857 907 KLFSLLNSFSFQHRVLLTGTPLQN 930 (1404)
Q Consensus 907 k~~~~L~~l~~~~rLLLTGTPlqN 930 (1404)
.+...+..+....||+|.|=|-|=
T Consensus 275 l~~~ll~al~~~~rlIlvGD~~QL 298 (586)
T TIGR01447 275 LMAKLLKALPPNTKLILLGDKNQL 298 (586)
T ss_pred HHHHHHHhcCCCCEEEEECChhhC
Confidence 456677778888899999988653
No 224
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=93.20 E-value=0.33 Score=55.88 Aligned_cols=26 Identities=23% Similarity=0.172 Sum_probs=21.6
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHHh
Q 042857 775 KNVILADEMGLGKTVSACAFISSLYC 800 (1404)
Q Consensus 775 ~~~ILADEMGLGKTiqaIa~L~~L~~ 800 (1404)
.+.||..+.|+|||..|-++...+..
T Consensus 43 ~~vll~GppGtGKTtlA~~ia~~l~~ 68 (261)
T TIGR02881 43 LHMIFKGNPGTGKTTVARILGKLFKE 68 (261)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 46789999999999999888776643
No 225
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.80 E-value=0.44 Score=59.30 Aligned_cols=42 Identities=31% Similarity=0.363 Sum_probs=29.3
Q ss_pred HHHHHHHHHHhhccCC---cEEEEcCCCchHHHHHHHHHHHHHhh
Q 042857 760 QLEALNWLRKCWHKSK---NVILADEMGLGKTVSACAFISSLYCE 801 (1404)
Q Consensus 760 QlegVnwL~~~~~~~~---~~ILADEMGLGKTiqaIa~L~~L~~~ 801 (1404)
|...+..|...+..++ ..|+..+.|.|||..|..++..+...
T Consensus 23 Qe~iv~~L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce 67 (484)
T PRK14956 23 QDLAIGALQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRLNCE 67 (484)
T ss_pred hHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhcCcc
Confidence 4444444444444443 25999999999999999998887644
No 226
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=92.78 E-value=0.47 Score=61.43 Aligned_cols=38 Identities=26% Similarity=0.490 Sum_probs=35.0
Q ss_pred CCCHHHHHHHHHHHHhhccCCcEEEEcCCCchHHHHHH
Q 042857 755 ALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSAC 792 (1404)
Q Consensus 755 ~L~pyQlegVnwL~~~~~~~~~~ILADEMGLGKTiqaI 792 (1404)
++||-|+.-+..++..+....+++|-..+|.|||+.-|
T Consensus 21 qpY~~Q~a~M~rvl~~L~~~q~~llESPTGTGKSLsLL 58 (945)
T KOG1132|consen 21 QPYPTQLAFMTRVLSCLDRKQNGLLESPTGTGKSLSLL 58 (945)
T ss_pred CcchHHHHHHHHHHHHHHHhhhhhccCCCCCCccHHHH
Confidence 67999999999999999999999999999999998655
No 227
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=92.66 E-value=0.59 Score=55.61 Aligned_cols=152 Identities=24% Similarity=0.241 Sum_probs=81.1
Q ss_pred CCHHHHHHHHHHHHhhccCCcEEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEeCCCChHHHHHHHHHHCCCCcEEE
Q 042857 756 LFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLSTMPNWLAEFALWAPNLNVVE 835 (1404)
Q Consensus 756 L~pyQlegVnwL~~~~~~~~~~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP~Sll~nW~rEf~kw~P~l~Vvv 835 (1404)
.--+|.-++.-|+. ..-.=+.|...-|.|||+.|+|+-.+...+.+....++|.=|.--+. ++|- |
T Consensus 229 rn~eQ~~ALdlLld--~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~KiiVtRp~vpvG---~dIG-f-------- 294 (436)
T COG1875 229 RNAEQRVALDLLLD--DDIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKIIVTRPTVPVG---EDIG-F-------- 294 (436)
T ss_pred ccHHHHHHHHHhcC--CCCCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceEEEecCCcCcc---cccC-c--------
Confidence 34588888887754 22244678889999999999988777666666655555544543332 1110 0
Q ss_pred EecchhHH------HHHHHhhhccCCCCcc----ccccCCCCceEEEeeHHHHHhhhccccCCCceEEEEccccccCCCc
Q 042857 836 YHGCAKAR------AIIRQYEWHASDPDNL----NKKTSSYKFNVLLTTYEMILADSSHLRGVPWEVLVVDEGHRLKNSG 905 (1404)
Q Consensus 836 y~G~~~~R------~~ir~~E~~~~~~~~~----~~~~~~~kfdVvITTYe~l~~d~~~L~~i~w~lVIVDEAHrlKN~~ 905 (1404)
.-|....+ .+....|+-+...... ..........|--.|| ++ =++++=.+|||||||+|. .
T Consensus 295 LPG~eEeKm~PWmq~i~DnLE~L~~~~~~~~~~l~~~l~~~~iev~alt~---IR----GRSl~~~FiIIDEaQNLT--p 365 (436)
T COG1875 295 LPGTEEEKMGPWMQAIFDNLEVLFSPNEPGDRALEEILSRGRIEVEALTY---IR----GRSLPDSFIIIDEAQNLT--P 365 (436)
T ss_pred CCCchhhhccchHHHHHhHHHHHhcccccchHHHHHHHhccceeeeeeee---ec----ccccccceEEEehhhccC--H
Confidence 11111111 1111122111100000 0000001112222222 00 123455799999999996 3
Q ss_pred cHHHHHHhhcccccEEEEeccCCCC
Q 042857 906 SKLFSLLNSFSFQHRVLLTGTPLQN 930 (1404)
Q Consensus 906 Sk~~~~L~~l~~~~rLLLTGTPlqN 930 (1404)
..+...+.+.-...++.|||-|-|-
T Consensus 366 heikTiltR~G~GsKIVl~gd~aQi 390 (436)
T COG1875 366 HELKTILTRAGEGSKIVLTGDPAQI 390 (436)
T ss_pred HHHHHHHHhccCCCEEEEcCCHHHc
Confidence 4556677777888999999998664
No 228
>KOG2748 consensus Uncharacterized conserved protein, contains chromo domain [Chromatin structure and dynamics]
Probab=92.66 E-value=0.12 Score=60.13 Aligned_cols=54 Identities=28% Similarity=0.439 Sum_probs=39.2
Q ss_pred ccchhhhhhhccCCCCcceeeeccCCCCCCcccccCCCchHHHhhHHHHHHHHHHHHh
Q 042857 661 WKQPQRVISLRSSKDGTREAFVKWTGLPYDECTWEKLDEPALEKYSHLTDLFVQFERQ 718 (1404)
Q Consensus 661 ~~~~eRii~~r~~~~~~~eylVKW~gL~Y~~~TWE~~~~~~~~~~~~li~~~~~~~~~ 718 (1404)
-+-.+-||.+|. ..|..||||||+|-.--..|||-.+. + ..+.||.+|.+.+..
T Consensus 10 VfAaEsIlkkRi-rKGrvEYlVKWkGWs~kyNTWEPEEN--I-LDpRLi~AFe~rEre 63 (369)
T KOG2748|consen 10 VFAAESILKKRI-RKGRVEYLVKWKGWSQKYNTWEPEEN--I-LDPRLIAAFEQRERE 63 (369)
T ss_pred HHHHHHHHHHHh-hccceEEEEEecccccccCccCcccc--c-cCHHHHHHHHhhhHH
Confidence 345567777664 45999999999998888999995432 2 235688888876554
No 229
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=92.58 E-value=0.98 Score=58.27 Aligned_cols=147 Identities=17% Similarity=0.147 Sum_probs=82.9
Q ss_pred CCHHHHHHHHHHHHhhccCCcEEEEcCCCchHHHHHHHHHHHHHhhcc-CCCcEEEEeCCCChHHHHHH-HHHHCCCCcE
Q 042857 756 LFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFK-AKLPCLVLVPLSTMPNWLAE-FALWAPNLNV 833 (1404)
Q Consensus 756 L~pyQlegVnwL~~~~~~~~~~ILADEMGLGKTiqaIa~L~~L~~~~~-~~gP~LIVvP~Sll~nW~rE-f~kw~P~l~V 833 (1404)
..+.|++++.-... ..-.+|....|+|||.++..++..+..... ...++++++|+..-..=..| +..-...+..
T Consensus 153 ~~d~Qk~Av~~a~~----~~~~vItGgpGTGKTt~v~~ll~~l~~~~~~~~~~i~l~APTgkAA~rL~e~~~~~~~~~~~ 228 (615)
T PRK10875 153 EVDWQKVAAAVALT----RRISVISGGPGTGKTTTVAKLLAALIQLADGERCRIRLAAPTGKAAARLTESLGKALRQLPL 228 (615)
T ss_pred CCHHHHHHHHHHhc----CCeEEEEeCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEECCcHHHHHHHHHHHHhhhhcccc
Confidence 46899999976544 577899999999999999888887765332 22467888898755433333 2211111110
Q ss_pred EEE--ec-chhHHHHHHHhhhccCCCCccccccCCCCceEEEeeHHHHHhhhccccCCCceEEEEccccccCCCccHHHH
Q 042857 834 VEY--HG-CAKARAIIRQYEWHASDPDNLNKKTSSYKFNVLLTTYEMILADSSHLRGVPWEVLVVDEGHRLKNSGSKLFS 910 (1404)
Q Consensus 834 vvy--~G-~~~~R~~ir~~E~~~~~~~~~~~~~~~~kfdVvITTYe~l~~d~~~L~~i~w~lVIVDEAHrlKN~~Sk~~~ 910 (1404)
-.. .. ......+.+-..+... . ..+.. ..-...++++|||||+-.+- -.....
T Consensus 229 ~~~~~~~~~~~a~TiHrlLg~~~~----------~----------~~~~~--~~~~~l~~dvlIvDEaSMvd--~~lm~~ 284 (615)
T PRK10875 229 TDEQKKRIPEEASTLHRLLGAQPG----------S----------QRLRY--HAGNPLHLDVLVVDEASMVD--LPMMAR 284 (615)
T ss_pred chhhhhcCCCchHHHHHHhCcCCC----------c----------cchhh--ccccCCCCCeEEEChHhccc--HHHHHH
Confidence 000 00 0000111111100000 0 00000 01123467899999998873 345567
Q ss_pred HHhhcccccEEEEeccCCCC
Q 042857 911 LLNSFSFQHRVLLTGTPLQN 930 (1404)
Q Consensus 911 ~L~~l~~~~rLLLTGTPlqN 930 (1404)
.+..+....||+|-|-|-|-
T Consensus 285 ll~al~~~~rlIlvGD~~QL 304 (615)
T PRK10875 285 LIDALPPHARVIFLGDRDQL 304 (615)
T ss_pred HHHhcccCCEEEEecchhhc
Confidence 77888888999999988653
No 230
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=92.49 E-value=0.62 Score=56.17 Aligned_cols=42 Identities=19% Similarity=0.377 Sum_probs=34.5
Q ss_pred HHHHHHHHHHhhccCC---cEEEEcCCCchHHHHHHHHHHHHHhh
Q 042857 760 QLEALNWLRKCWHKSK---NVILADEMGLGKTVSACAFISSLYCE 801 (1404)
Q Consensus 760 QlegVnwL~~~~~~~~---~~ILADEMGLGKTiqaIa~L~~L~~~ 801 (1404)
|.+++..|...+..++ ..++..+.|+|||..+..++..+...
T Consensus 28 h~~a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~Llc~ 72 (351)
T PRK09112 28 HEEAEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHILSH 72 (351)
T ss_pred cHHHHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHHcCC
Confidence 5667788888887776 47889999999999999999888753
No 231
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.30 E-value=0.7 Score=61.10 Aligned_cols=42 Identities=29% Similarity=0.438 Sum_probs=29.7
Q ss_pred HHHHHHHHHHhhccC--CcE-EEEcCCCchHHHHHHHHHHHHHhh
Q 042857 760 QLEALNWLRKCWHKS--KNV-ILADEMGLGKTVSACAFISSLYCE 801 (1404)
Q Consensus 760 QlegVnwL~~~~~~~--~~~-ILADEMGLGKTiqaIa~L~~L~~~ 801 (1404)
|...+..|...+..+ .+. ||..+.|+|||..+..|+..+...
T Consensus 21 Qe~Iv~~LknaI~~~rl~HAyLFtGPpGtGKTTLARiLAk~Lnce 65 (944)
T PRK14949 21 QSHVLHALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKGLNCE 65 (944)
T ss_pred cHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHhccCc
Confidence 444445455544443 344 899999999999999999888654
No 232
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=92.23 E-value=0.38 Score=47.54 Aligned_cols=44 Identities=16% Similarity=0.054 Sum_probs=30.9
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEeCCCChHHH
Q 042857 774 SKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLSTMPNW 820 (1404)
Q Consensus 774 ~~~~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP~Sll~nW 820 (1404)
+...+|...+|.|||..+..++..+.... .+++++.+......+
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~---~~~~~~~~~~~~~~~ 45 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPG---GGVIYIDGEDILEEV 45 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCC---CCEEEECCEEccccC
Confidence 46788999999999999988877664322 246666666555443
No 233
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=92.19 E-value=0.76 Score=59.33 Aligned_cols=42 Identities=26% Similarity=0.385 Sum_probs=31.2
Q ss_pred HHHHHHHHHHhhccCC--c-EEEEcCCCchHHHHHHHHHHHHHhh
Q 042857 760 QLEALNWLRKCWHKSK--N-VILADEMGLGKTVSACAFISSLYCE 801 (1404)
Q Consensus 760 QlegVnwL~~~~~~~~--~-~ILADEMGLGKTiqaIa~L~~L~~~ 801 (1404)
|-..+..|...+..++ + .|+..+.|+|||..+..|...+...
T Consensus 21 Qe~vv~~L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~ 65 (647)
T PRK07994 21 QEHVLTALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKGLNCE 65 (647)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhhhc
Confidence 4455556666665553 3 4899999999999999999888764
No 234
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=91.78 E-value=1.8 Score=52.87 Aligned_cols=133 Identities=11% Similarity=0.158 Sum_probs=74.0
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHHhhc-cCCCcEEEEeCCCCh--HHHHHHHHHHCCCCcEEEEecchhHHHHHHHhhh
Q 042857 775 KNVILADEMGLGKTVSACAFISSLYCEF-KAKLPCLVLVPLSTM--PNWLAEFALWAPNLNVVEYHGCAKARAIIRQYEW 851 (1404)
Q Consensus 775 ~~~ILADEMGLGKTiqaIa~L~~L~~~~-~~~gP~LIVvP~Sll--~nW~rEf~kw~P~l~Vvvy~G~~~~R~~ir~~E~ 851 (1404)
...++...+|.|||.++.-++..+.... ....++.+|.-..-- ..|+ +..|+-.+.+-+
T Consensus 175 ~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQ--L~~~a~~lgvpv---------------- 236 (388)
T PRK12723 175 RVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQ--IQTYGDIMGIPV---------------- 236 (388)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHH--HHHHhhcCCcce----------------
Confidence 4567899999999998877666554332 123345555433211 2222 455542222111
Q ss_pred ccCCCCccccccCCCCceEEEeeHHHHHhhhccccCCCceEEEEccccccCCCcc---HHHHHHhhccc--ccEEEEecc
Q 042857 852 HASDPDNLNKKTSSYKFNVLLTTYEMILADSSHLRGVPWEVLVVDEGHRLKNSGS---KLFSLLNSFSF--QHRVLLTGT 926 (1404)
Q Consensus 852 ~~~~~~~~~~~~~~~kfdVvITTYe~l~~d~~~L~~i~w~lVIVDEAHrlKN~~S---k~~~~L~~l~~--~~rLLLTGT 926 (1404)
.++.+++.+......+ -+.++||||++.++..... .+...+..... ...|.|+||
T Consensus 237 ------------------~~~~~~~~l~~~L~~~--~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat 296 (388)
T PRK12723 237 ------------------KAIESFKDLKEEITQS--KDFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSST 296 (388)
T ss_pred ------------------EeeCcHHHHHHHHHHh--CCCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCC
Confidence 1122334443322233 3578999999999864332 23333443332 345779999
Q ss_pred CCCCChHHHHHHhhhhCCC
Q 042857 927 PLQNNIGEMYNLLNFLQPA 945 (1404)
Q Consensus 927 PlqNnl~EL~sLL~fL~P~ 945 (1404)
-=++.+.+.+.-...+.++
T Consensus 297 ~~~~~~~~~~~~~~~~~~~ 315 (388)
T PRK12723 297 TKTSDVKEIFHQFSPFSYK 315 (388)
T ss_pred CCHHHHHHHHHHhcCCCCC
Confidence 8888888777766655443
No 235
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=91.41 E-value=0.83 Score=54.60 Aligned_cols=48 Identities=23% Similarity=0.348 Sum_probs=36.9
Q ss_pred CCCHHHHHHHHHHHHhhccCCcEEEEcCCCchHHHHHHHHHHHHHhhc
Q 042857 755 ALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEF 802 (1404)
Q Consensus 755 ~L~pyQlegVnwL~~~~~~~~~~ILADEMGLGKTiqaIa~L~~L~~~~ 802 (1404)
.++|+|......++..-.-....++..+.|+|||..+.+|+..+....
T Consensus 3 ~~yPWl~~~~~~~~~~~r~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~ 50 (328)
T PRK05707 3 EIYPWQQSLWQQLAGRGRHPHAYLLHGPAGIGKRALAERLAAALLCEA 50 (328)
T ss_pred cCCCCcHHHHHHHHHCCCcceeeeeECCCCCCHHHHHHHHHHHHcCCC
Confidence 468999988888877511123356899999999999999999988654
No 236
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.28 E-value=1.4 Score=55.88 Aligned_cols=42 Identities=21% Similarity=0.371 Sum_probs=30.1
Q ss_pred HHHHHHHHHHhhccC--Cc-EEEEcCCCchHHHHHHHHHHHHHhh
Q 042857 760 QLEALNWLRKCWHKS--KN-VILADEMGLGKTVSACAFISSLYCE 801 (1404)
Q Consensus 760 QlegVnwL~~~~~~~--~~-~ILADEMGLGKTiqaIa~L~~L~~~ 801 (1404)
|...+..|...+..+ .+ .|+....|+|||..+..+...+...
T Consensus 21 q~~v~~~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~ 65 (509)
T PRK14958 21 QAPVVRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCLNCE 65 (509)
T ss_pred CHHHHHHHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 444555555555443 33 4899999999999999998888654
No 237
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.09 E-value=1.9 Score=55.58 Aligned_cols=41 Identities=22% Similarity=0.340 Sum_probs=28.5
Q ss_pred HHHHHHHHHhhccCC---cEEEEcCCCchHHHHHHHHHHHHHhh
Q 042857 761 LEALNWLRKCWHKSK---NVILADEMGLGKTVSACAFISSLYCE 801 (1404)
Q Consensus 761 legVnwL~~~~~~~~---~~ILADEMGLGKTiqaIa~L~~L~~~ 801 (1404)
-..+..|...+..++ ..|+....|+|||..|.+++..+...
T Consensus 21 e~vv~~L~~aI~~grl~HAyLF~GPpGvGKTTlAriLAK~LnC~ 64 (702)
T PRK14960 21 NHVSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCLNCE 64 (702)
T ss_pred HHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 334444444444442 44999999999999999888877543
No 238
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]
Probab=91.08 E-value=0.58 Score=58.79 Aligned_cols=75 Identities=21% Similarity=0.240 Sum_probs=61.2
Q ss_pred CCCHHHHHHHHHHHHhhccCCcEEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEeCCCC-hHHHHHHHHHHCCCCcE
Q 042857 755 ALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLST-MPNWLAEFALWAPNLNV 833 (1404)
Q Consensus 755 ~L~pyQlegVnwL~~~~~~~~~~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP~Sl-l~nW~rEf~kw~P~l~V 833 (1404)
+|-.-|..||...+. ..=.||....|+|||++..++++++.+. ..+|+||++|..+ +.|-..-|.+- .++|
T Consensus 410 kLN~SQ~~AV~~VL~----rplsLIQGPPGTGKTvtsa~IVyhl~~~--~~~~VLvcApSNiAVDqLaeKIh~t--gLKV 481 (935)
T KOG1802|consen 410 KLNASQSNAVKHVLQ----RPLSLIQGPPGTGKTVTSATIVYHLARQ--HAGPVLVCAPSNIAVDQLAEKIHKT--GLKV 481 (935)
T ss_pred hhchHHHHHHHHHHc----CCceeeecCCCCCceehhHHHHHHHHHh--cCCceEEEcccchhHHHHHHHHHhc--CceE
Confidence 578899999988876 5668999999999999999999999865 4579999999875 47887777664 4777
Q ss_pred EEEe
Q 042857 834 VEYH 837 (1404)
Q Consensus 834 vvy~ 837 (1404)
+-..
T Consensus 482 vRl~ 485 (935)
T KOG1802|consen 482 VRLC 485 (935)
T ss_pred eeee
Confidence 6554
No 239
>KOG1911 consensus Heterochromatin-associated protein HP1 and related CHROMO domain proteins [Chromatin structure and dynamics]
Probab=90.94 E-value=0.18 Score=58.46 Aligned_cols=55 Identities=27% Similarity=0.450 Sum_probs=40.7
Q ss_pred hhhccchhhhhhhccCCCCcceeeeccCCCCCCcccccCCCchHHHhhHHHHHHHHHH
Q 042857 658 DERWKQPQRVISLRSSKDGTREAFVKWTGLPYDECTWEKLDEPALEKYSHLTDLFVQF 715 (1404)
Q Consensus 658 ~~e~~~~eRii~~r~~~~~~~eylVKW~gL~Y~~~TWE~~~~~~~~~~~~li~~~~~~ 715 (1404)
.++...+++|+++|... |..+|||||+|.+-.+.|||... .+..-+.+|+.|+.-
T Consensus 45 ~~~~~vvEki~~~r~~~-g~~eYlvkW~Gy~~~~ntWEPee--~~~~C~~li~~~~~~ 99 (270)
T KOG1911|consen 45 EEEEYVVEKILKRRKKN-GKIEYLVKWKGYPDPDNTWEPEE--HNLDCPELIDEFEKS 99 (270)
T ss_pred ccchhhhhhhhhccccC-CCceeeeecCCCCCccccCCchh--hccccHHHHHHHHHH
Confidence 34556788999987654 55899999999999999999542 123346778887753
No 240
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.93 E-value=1.5 Score=53.18 Aligned_cols=41 Identities=24% Similarity=0.332 Sum_probs=30.6
Q ss_pred HHHHHHHHHHhhccCC--c-EEEEcCCCchHHHHHHHHHHHHHh
Q 042857 760 QLEALNWLRKCWHKSK--N-VILADEMGLGKTVSACAFISSLYC 800 (1404)
Q Consensus 760 QlegVnwL~~~~~~~~--~-~ILADEMGLGKTiqaIa~L~~L~~ 800 (1404)
|...+..+...+..++ + .||..+.|+|||..+-+++..+..
T Consensus 21 q~~~~~~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l~c 64 (363)
T PRK14961 21 QKHIVTAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSLNC 64 (363)
T ss_pred hHHHHHHHHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHhcC
Confidence 5566666666665542 3 489999999999999998887753
No 241
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=90.71 E-value=1.2 Score=52.70 Aligned_cols=40 Identities=23% Similarity=0.341 Sum_probs=29.6
Q ss_pred HHHHHHHHHhhccCC--cEEEEcCCCchHHHHHHHHHHHHHh
Q 042857 761 LEALNWLRKCWHKSK--NVILADEMGLGKTVSACAFISSLYC 800 (1404)
Q Consensus 761 legVnwL~~~~~~~~--~~ILADEMGLGKTiqaIa~L~~L~~ 800 (1404)
.+.+.+|......+. +.+|..+.|.|||..+.++...+..
T Consensus 21 ~~~~~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l~~ 62 (337)
T PRK12402 21 DEVVERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALARELYG 62 (337)
T ss_pred HHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhcC
Confidence 334555555445555 7899999999999999999887753
No 242
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.70 E-value=1.4 Score=56.03 Aligned_cols=42 Identities=29% Similarity=0.393 Sum_probs=29.8
Q ss_pred HHHHHHHHHHhhccCC---cEEEEcCCCchHHHHHHHHHHHHHhh
Q 042857 760 QLEALNWLRKCWHKSK---NVILADEMGLGKTVSACAFISSLYCE 801 (1404)
Q Consensus 760 QlegVnwL~~~~~~~~---~~ILADEMGLGKTiqaIa~L~~L~~~ 801 (1404)
|...+..|...+..++ ..|+..+.|+|||..+..|+..+...
T Consensus 21 q~~~v~~L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~ 65 (546)
T PRK14957 21 QQHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLNCK 65 (546)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 4444555555554443 35799999999999999999887653
No 243
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=90.24 E-value=0.37 Score=54.43 Aligned_cols=74 Identities=18% Similarity=0.128 Sum_probs=57.0
Q ss_pred CCCCCCHHHHHHHHHHHHhhccCCcEEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEeCCCChHHHHHHHHHHC
Q 042857 752 KGGALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLSTMPNWLAEFALWA 828 (1404)
Q Consensus 752 ~g~~L~pyQlegVnwL~~~~~~~~~~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP~Sll~nW~rEf~kw~ 828 (1404)
.+..+||-|.+.+..|+.. ..+.|.++..-||-|||-+.+=+++.++..+. .=+-+|||..++.+-..-+..-+
T Consensus 20 ~~iliR~~Q~~ia~~mi~~-~~~~n~v~QlnMGeGKTsVI~Pmla~~LAdg~--~LvrviVpk~Ll~q~~~~L~~~l 93 (229)
T PF12340_consen 20 SNILIRPVQVEIAREMISP-PSGKNSVMQLNMGEGKTSVIVPMLALALADGS--RLVRVIVPKALLEQMRQMLRSRL 93 (229)
T ss_pred cCceeeHHHHHHHHHHhCC-CCCCCeEeeecccCCccchHHHHHHHHHcCCC--cEEEEEcCHHHHHHHHHHHHHHH
Confidence 3557999999999999864 56789999999999999888877776664433 24678889999887766665443
No 244
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=89.80 E-value=1.2 Score=57.54 Aligned_cols=42 Identities=21% Similarity=0.388 Sum_probs=31.0
Q ss_pred HHHHHHHHHHhhccCC--c-EEEEcCCCchHHHHHHHHHHHHHhh
Q 042857 760 QLEALNWLRKCWHKSK--N-VILADEMGLGKTVSACAFISSLYCE 801 (1404)
Q Consensus 760 QlegVnwL~~~~~~~~--~-~ILADEMGLGKTiqaIa~L~~L~~~ 801 (1404)
|...+..|...+..++ + .|+....|+|||..+..|...+...
T Consensus 21 Qe~vv~~L~~~l~~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~ 65 (618)
T PRK14951 21 QEHVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSLNCQ 65 (618)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 4555666666555543 3 4899999999999999998888754
No 245
>PRK06526 transposase; Provisional
Probab=89.73 E-value=1.4 Score=50.84 Aligned_cols=54 Identities=26% Similarity=0.318 Sum_probs=36.2
Q ss_pred HHHHHHHHHhhccCCcEEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEeCCCChHHHHHHHH
Q 042857 761 LEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLSTMPNWLAEFA 825 (1404)
Q Consensus 761 legVnwL~~~~~~~~~~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP~Sll~nW~rEf~ 825 (1404)
+.+..|+. .+.+.+|....|.|||..+.++...+...+ .+++++ ....|..++.
T Consensus 89 l~~~~fi~----~~~nlll~Gp~GtGKThLa~al~~~a~~~g---~~v~f~----t~~~l~~~l~ 142 (254)
T PRK06526 89 LGTLDFVT----GKENVVFLGPPGTGKTHLAIGLGIRACQAG---HRVLFA----TAAQWVARLA 142 (254)
T ss_pred HhcCchhh----cCceEEEEeCCCCchHHHHHHHHHHHHHCC---Cchhhh----hHHHHHHHHH
Confidence 33445663 478899999999999999999887776432 234332 3345666654
No 246
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=89.59 E-value=2.5 Score=45.23 Aligned_cols=46 Identities=24% Similarity=0.370 Sum_probs=33.5
Q ss_pred HHHHHHHHHHhhccC---CcEEEEcCCCchHHHHHHHHHHHHHhhccCC
Q 042857 760 QLEALNWLRKCWHKS---KNVILADEMGLGKTVSACAFISSLYCEFKAK 805 (1404)
Q Consensus 760 QlegVnwL~~~~~~~---~~~ILADEMGLGKTiqaIa~L~~L~~~~~~~ 805 (1404)
|.+.+..|...+.++ ...|+..+.|.||+..+.+|+..++......
T Consensus 2 q~~~~~~L~~~~~~~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~ 50 (162)
T PF13177_consen 2 QEEIIELLKNLIKSGRLPHALLFHGPSGSGKKTLALAFARALLCSNPNE 50 (162)
T ss_dssp -HHHHHHHHHHHHCTC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CT
T ss_pred cHHHHHHHHHHHHcCCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCC
Confidence 566677777766665 2358899999999999999999988665443
No 247
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=89.30 E-value=3.1 Score=50.98 Aligned_cols=42 Identities=21% Similarity=0.357 Sum_probs=31.1
Q ss_pred HHHHHHHHHHhhccC---CcEEEEcCCCchHHHHHHHHHHHHHhh
Q 042857 760 QLEALNWLRKCWHKS---KNVILADEMGLGKTVSACAFISSLYCE 801 (1404)
Q Consensus 760 QlegVnwL~~~~~~~---~~~ILADEMGLGKTiqaIa~L~~L~~~ 801 (1404)
|...+..|...+.++ ...|+..+.|+|||..|.+|...+..+
T Consensus 21 q~~~~~~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~ 65 (397)
T PRK14955 21 QEHITRTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAVNCQ 65 (397)
T ss_pred hHHHHHHHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 455555566666554 236789999999999999999888654
No 248
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=89.28 E-value=1.1 Score=60.08 Aligned_cols=131 Identities=18% Similarity=0.230 Sum_probs=84.8
Q ss_pred hccCCcEEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEeCCCCh-----HHHHHHHHHHCCCCcEEEEecchhHHHH
Q 042857 771 WHKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLSTM-----PNWLAEFALWAPNLNVVEYHGCAKARAI 845 (1404)
Q Consensus 771 ~~~~~~~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP~Sll-----~nW~rEf~kw~P~l~Vvvy~G~~~~R~~ 845 (1404)
+..+.+++++...|.|||+.|=.++.. ....+.+.-++|...+ .-|..-|... .++.++...|....-..
T Consensus 1156 y~~nd~v~vga~~gsgkt~~ae~a~l~----~~~~~~~vyi~p~~~i~~~~~~~w~~~f~~~-~G~~~~~l~ge~s~~lk 1230 (1674)
T KOG0951|consen 1156 YNTNDNVLVGAPNGSGKTACAELALLR----PDTIGRAVYIAPLEEIADEQYRDWEKKFSKL-LGLRIVKLTGETSLDLK 1230 (1674)
T ss_pred ecccceEEEecCCCCchhHHHHHHhcC----CccceEEEEecchHHHHHHHHHHHHHhhccc-cCceEEecCCccccchH
Confidence 456788999999999999887554432 3345678889998765 4677777776 46777777774432211
Q ss_pred HHHhhhccCCCCccccccCCCCceEEEeeHHHHHhhhccccCCCceEEEEccccccCCCccH-------HHHHHhhcccc
Q 042857 846 IRQYEWHASDPDNLNKKTSSYKFNVLLTTYEMILADSSHLRGVPWEVLVVDEGHRLKNSGSK-------LFSLLNSFSFQ 918 (1404)
Q Consensus 846 ir~~E~~~~~~~~~~~~~~~~kfdVvITTYe~l~~d~~~L~~i~w~lVIVDEAHrlKN~~Sk-------~~~~L~~l~~~ 918 (1404)
. ..+-+|+|.|++.+-.-. .. ...++.|+||.|-+.....+ ...+..++...
T Consensus 1231 l------------------~~~~~vii~tpe~~d~lq-~i--Q~v~l~i~d~lh~igg~~g~v~evi~S~r~ia~q~~k~ 1289 (1674)
T KOG0951|consen 1231 L------------------LQKGQVIISTPEQWDLLQ-SI--QQVDLFIVDELHLIGGVYGAVYEVICSMRYIASQLEKK 1289 (1674)
T ss_pred H------------------hhhcceEEechhHHHHHh-hh--hhcceEeeehhhhhcccCCceEEEEeeHHHHHHHHHhh
Confidence 1 125689999998876542 22 24578999999999764322 33333444455
Q ss_pred cEEEEeccC
Q 042857 919 HRVLLTGTP 927 (1404)
Q Consensus 919 ~rLLLTGTP 927 (1404)
.|+.--+|-
T Consensus 1290 ir~v~ls~~ 1298 (1674)
T KOG0951|consen 1290 IRVVALSSS 1298 (1674)
T ss_pred eeEEEeehh
Confidence 555433333
No 249
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=89.21 E-value=3.3 Score=49.68 Aligned_cols=44 Identities=23% Similarity=0.188 Sum_probs=33.0
Q ss_pred CHHHHHHHHHHHHhhcc---CCcEEEEcCCCchHHHHHHHHHHHHHh
Q 042857 757 FPHQLEALNWLRKCWHK---SKNVILADEMGLGKTVSACAFISSLYC 800 (1404)
Q Consensus 757 ~pyQlegVnwL~~~~~~---~~~~ILADEMGLGKTiqaIa~L~~L~~ 800 (1404)
|..|++.+...+..+.. ..+.+|..+.|.|||..+-.++..+..
T Consensus 20 Re~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~ 66 (365)
T TIGR02928 20 RDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEE 66 (365)
T ss_pred cHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHH
Confidence 67788777655554332 357899999999999999888887754
No 250
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=89.16 E-value=2.5 Score=53.47 Aligned_cols=96 Identities=15% Similarity=0.212 Sum_probs=74.8
Q ss_pred hhhhHHHHHHHHHHHHHHcCCeEEEEecchhHHHHHHHHHhhhcCCceEEEEeCCCCHHHHHHHHHHHhcCCCceEEEee
Q 042857 1068 KASAKLTLLHSMLKVLYKEGHRVLIFSQMTKLLDILEDYLNIEFGPKTYERVDGSVSVGDRQAAITRFNQDKSRFVFLLS 1147 (1404)
Q Consensus 1068 ~~SgKl~~L~kLL~kl~~~G~KVLIFSq~~~~LDiLed~L~~~f~g~~y~rLdGs~s~~eRq~~Id~Fn~~~s~~VfLLS 1147 (1404)
..|||......++......|.++||.++.......+.+.|...| +..+..++|.++..+|.+...+...+... |++.
T Consensus 6 TGsGKT~v~l~~i~~~l~~g~~vLvlvP~i~L~~Q~~~~l~~~f-~~~v~vlhs~~~~~er~~~~~~~~~g~~~--IVVG 82 (505)
T TIGR00595 6 TGSGKTEVYLQAIEKVLALGKSVLVLVPEIALTPQMIQRFKYRF-GSQVAVLHSGLSDSEKLQAWRKVKNGEIL--VVIG 82 (505)
T ss_pred CCCCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHh-CCcEEEEECCCCHHHHHHHHHHHHcCCCC--EEEC
Confidence 35899999988898888899999999999998888888888776 46788999999999998887776554444 5667
Q ss_pred cccccccccccCCCEEEEEc
Q 042857 1148 TRSCGLGINLATADTVIIYD 1167 (1404)
Q Consensus 1148 TrAgG~GINL~~AdtVIi~D 1167 (1404)
|+.. .=+-+.....||+-+
T Consensus 83 Trsa-lf~p~~~l~lIIVDE 101 (505)
T TIGR00595 83 TRSA-LFLPFKNLGLIIVDE 101 (505)
T ss_pred ChHH-HcCcccCCCEEEEEC
Confidence 7653 224456677777665
No 251
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=89.11 E-value=2.1 Score=52.51 Aligned_cols=27 Identities=30% Similarity=0.491 Sum_probs=22.8
Q ss_pred cEEEEcCCCchHHHHHHHHHHHHHhhc
Q 042857 776 NVILADEMGLGKTVSACAFISSLYCEF 802 (1404)
Q Consensus 776 ~~ILADEMGLGKTiqaIa~L~~L~~~~ 802 (1404)
..|+....|+|||..+.+|...+....
T Consensus 38 a~Lf~Gp~G~GKt~lA~~lA~~l~c~~ 64 (394)
T PRK07940 38 AWLFTGPPGSGRSVAARAFAAALQCTD 64 (394)
T ss_pred EEEEECCCCCcHHHHHHHHHHHhCCCC
Confidence 467999999999999999988876543
No 252
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=89.06 E-value=1.6 Score=48.47 Aligned_cols=27 Identities=22% Similarity=0.104 Sum_probs=22.3
Q ss_pred cCCcEEEEcCCCchHHHHHHHHHHHHH
Q 042857 773 KSKNVILADEMGLGKTVSACAFISSLY 799 (1404)
Q Consensus 773 ~~~~~ILADEMGLGKTiqaIa~L~~L~ 799 (1404)
...+.+|..+.|.|||..+.++...+.
T Consensus 37 ~~~~lll~G~~G~GKT~la~~~~~~~~ 63 (226)
T TIGR03420 37 GDRFLYLWGESGSGKSHLLQAACAAAE 63 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 356788999999999999988777654
No 253
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=88.99 E-value=2.4 Score=56.58 Aligned_cols=25 Identities=36% Similarity=0.482 Sum_probs=22.2
Q ss_pred EEEEcCCCchHHHHHHHHHHHHHhh
Q 042857 777 VILADEMGLGKTVSACAFISSLYCE 801 (1404)
Q Consensus 777 ~ILADEMGLGKTiqaIa~L~~L~~~ 801 (1404)
.||....|+|||..+..|...|.+.
T Consensus 40 ~Lf~Gp~G~GKTt~A~~lAr~L~C~ 64 (824)
T PRK07764 40 YLFSGPRGCGKTSSARILARSLNCV 64 (824)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCcc
Confidence 5899999999999999999888764
No 254
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=88.77 E-value=3 Score=49.09 Aligned_cols=50 Identities=22% Similarity=0.298 Sum_probs=33.2
Q ss_pred hhccCCccCCCCCCCHHHHHHHHHHHHhhccC-----CcEEEEcCCCchHHHHHHHHHH
Q 042857 743 ALTEQPEELKGGALFPHQLEALNWLRKCWHKS-----KNVILADEMGLGKTVSACAFIS 796 (1404)
Q Consensus 743 ~l~~qP~~l~g~~L~pyQlegVnwL~~~~~~~-----~~~ILADEMGLGKTiqaIa~L~ 796 (1404)
.++..|.++. ||.=.+++..|...+... .+.+|..+.|.|||..+=-|..
T Consensus 29 ~~i~~~rWIg----Y~~A~~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~ 83 (302)
T PF05621_consen 29 AYIRADRWIG----YPRAKEALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRR 83 (302)
T ss_pred HHHhcCCeec----CHHHHHHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHH
Confidence 3455666643 555566776666655432 5678999999999986655543
No 255
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=88.74 E-value=0.69 Score=54.10 Aligned_cols=39 Identities=18% Similarity=0.054 Sum_probs=27.2
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHHhhccC-CCcEEEEe
Q 042857 774 SKNVILADEMGLGKTVSACAFISSLYCEFKA-KLPCLVLV 812 (1404)
Q Consensus 774 ~~~~ILADEMGLGKTiqaIa~L~~L~~~~~~-~gP~LIVv 812 (1404)
+.+.+|..+.|+|||..|.++...+...+.. .++++.+.
T Consensus 58 ~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~ 97 (284)
T TIGR02880 58 TLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVT 97 (284)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEec
Confidence 3478899999999999998887776544322 23554444
No 256
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=88.52 E-value=2.8 Score=52.66 Aligned_cols=42 Identities=26% Similarity=0.404 Sum_probs=29.7
Q ss_pred HHHHHHHHHHhhccC---CcEEEEcCCCchHHHHHHHHHHHHHhh
Q 042857 760 QLEALNWLRKCWHKS---KNVILADEMGLGKTVSACAFISSLYCE 801 (1404)
Q Consensus 760 QlegVnwL~~~~~~~---~~~ILADEMGLGKTiqaIa~L~~L~~~ 801 (1404)
|-..+..|...+..+ ...|+....|+|||..|..+...+...
T Consensus 18 Qe~vv~~L~~a~~~~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~ 62 (491)
T PRK14964 18 QDVLVRILRNAFTLNKIPQSILLVGASGVGKTTCARIISLCLNCS 62 (491)
T ss_pred cHHHHHHHHHHHHcCCCCceEEEECCCCccHHHHHHHHHHHHcCc
Confidence 334445555555444 357899999999999998888777654
No 257
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=88.45 E-value=3 Score=49.86 Aligned_cols=48 Identities=19% Similarity=0.385 Sum_probs=39.3
Q ss_pred CCCHHHHHHHHHHHHhhccCC---cEEEEcCCCchHHHHHHHHHHHHHhhc
Q 042857 755 ALFPHQLEALNWLRKCWHKSK---NVILADEMGLGKTVSACAFISSLYCEF 802 (1404)
Q Consensus 755 ~L~pyQlegVnwL~~~~~~~~---~~ILADEMGLGKTiqaIa~L~~L~~~~ 802 (1404)
.++|+|......|...+..++ ..|+..+.|+||+..|.+|...+....
T Consensus 2 ~~yPW~~~~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~ 52 (325)
T PRK06871 2 ALYPWLQPTYQQITQAFQQGLGHHALLFKADSGLGTEQLIRALAQWLMCQT 52 (325)
T ss_pred CCCcchHHHHHHHHHHHHcCCcceeEEeECCCCCCHHHHHHHHHHHHcCCC
Confidence 367888888888888877653 346889999999999999999998754
No 258
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=88.34 E-value=3.3 Score=49.69 Aligned_cols=49 Identities=14% Similarity=0.280 Sum_probs=40.6
Q ss_pred CCCHHHHHHHHHHHHhhccCC---cEEEEcCCCchHHHHHHHHHHHHHhhcc
Q 042857 755 ALFPHQLEALNWLRKCWHKSK---NVILADEMGLGKTVSACAFISSLYCEFK 803 (1404)
Q Consensus 755 ~L~pyQlegVnwL~~~~~~~~---~~ILADEMGLGKTiqaIa~L~~L~~~~~ 803 (1404)
.++|+|......|...+..++ ..+++.+.|+||+..+.+|..++.....
T Consensus 2 ~~yPWl~~~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~ 53 (334)
T PRK07993 2 KWYPWLRPDYEQLVGSYQAGRGHHALLIQALPGMGDDALIYALSRWLMCQQP 53 (334)
T ss_pred CCCCCChHHHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHHHHHHHcCCCC
Confidence 478999999988888877654 3468999999999999999999987543
No 259
>KOG0957 consensus PHD finger protein [General function prediction only]
Probab=88.30 E-value=0.42 Score=57.70 Aligned_cols=46 Identities=33% Similarity=0.750 Sum_probs=35.9
Q ss_pred ccccccC-----CCceEEcCCCCCcccccccCCC-CCCCCCC-------CccCcccccc
Q 042857 77 ECVICDL-----GGNLLCCDSCPRTYHLQCLDPP-LKRIPNG-------KWQCPKCTQK 122 (1404)
Q Consensus 77 ~C~~C~~-----~g~ll~Cd~C~~~~H~~Cl~Pp-l~~~P~g-------~W~C~~C~~~ 122 (1404)
.|.||-. .|++|.||.|+-..|-.|.+-- -.+||.| .|||--|+..
T Consensus 121 iCcVClg~rs~da~ei~qCd~CGi~VHEgCYGv~dn~si~s~~s~~stepWfCeaC~~G 179 (707)
T KOG0957|consen 121 ICCVCLGQRSVDAGEILQCDKCGINVHEGCYGVLDNVSIPSGSSDCSTEPWFCEACLYG 179 (707)
T ss_pred EEEEeecCccccccceeeccccCceecccccccccccccCCCCccCCCCchhhhhHhcC
Confidence 7999965 4679999999999999999842 1345543 3999999865
No 260
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=88.22 E-value=2.7 Score=53.46 Aligned_cols=42 Identities=26% Similarity=0.378 Sum_probs=28.8
Q ss_pred HHHHHHHHHHhhccC---CcEEEEcCCCchHHHHHHHHHHHHHhh
Q 042857 760 QLEALNWLRKCWHKS---KNVILADEMGLGKTVSACAFISSLYCE 801 (1404)
Q Consensus 760 QlegVnwL~~~~~~~---~~~ILADEMGLGKTiqaIa~L~~L~~~ 801 (1404)
|...+..|...+..+ ...|+..+.|+|||..+-.|+..+...
T Consensus 21 q~~v~~~L~~~i~~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~ 65 (527)
T PRK14969 21 QEHVVRALTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSLNCE 65 (527)
T ss_pred cHHHHHHHHHHHHcCCCCEEEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 444454454444433 234899999999999999988887643
No 261
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=88.12 E-value=3.3 Score=53.20 Aligned_cols=42 Identities=26% Similarity=0.312 Sum_probs=31.2
Q ss_pred HHHHHHHHHHhhccC--Cc-EEEEcCCCchHHHHHHHHHHHHHhh
Q 042857 760 QLEALNWLRKCWHKS--KN-VILADEMGLGKTVSACAFISSLYCE 801 (1404)
Q Consensus 760 QlegVnwL~~~~~~~--~~-~ILADEMGLGKTiqaIa~L~~L~~~ 801 (1404)
|...+..|...+..+ .+ .|+....|+|||..+.+|+..+...
T Consensus 18 q~~i~~~L~~~i~~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~ 62 (584)
T PRK14952 18 QEHVTEPLSSALDAGRINHAYLFSGPRGCGKTSSARILARSLNCA 62 (584)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccc
Confidence 555566666655554 23 4899999999999999999888754
No 262
>smart00492 HELICc3 helicase superfamily c-terminal domain.
Probab=88.08 E-value=2.8 Score=44.05 Aligned_cols=47 Identities=17% Similarity=0.252 Sum_probs=35.2
Q ss_pred CCHHHHHHHHHHHhcCCCceEEEeecccccccccccC--CCEEEEEcCCC
Q 042857 1123 VSVGDRQAAITRFNQDKSRFVFLLSTRSCGLGINLAT--ADTVIIYDSDF 1170 (1404)
Q Consensus 1123 ~s~~eRq~~Id~Fn~~~s~~VfLLSTrAgG~GINL~~--AdtVIi~DsdW 1170 (1404)
....+...+++.|.+.... .+|+++....+|||++. +..||+.-.|+
T Consensus 31 ~~~~~~~~~l~~f~~~~~~-~iL~~~~~~~EGiD~~g~~~r~vii~glPf 79 (141)
T smart00492 31 EDGKETGKLLEKYVEACEN-AILLATARFSEGVDFPGDYLRAVIIDGLPF 79 (141)
T ss_pred CChhHHHHHHHHHHHcCCC-EEEEEccceecceecCCCCeeEEEEEecCC
Confidence 3444678899999865432 46777767999999975 67899988775
No 263
>CHL00181 cbbX CbbX; Provisional
Probab=88.05 E-value=0.78 Score=53.76 Aligned_cols=39 Identities=23% Similarity=0.143 Sum_probs=26.8
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHHhhccC-CCcEEEEe
Q 042857 774 SKNVILADEMGLGKTVSACAFISSLYCEFKA-KLPCLVLV 812 (1404)
Q Consensus 774 ~~~~ILADEMGLGKTiqaIa~L~~L~~~~~~-~gP~LIVv 812 (1404)
+.+.+|..+.|+|||..|-++...+...+.. .++++.|.
T Consensus 59 ~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~ 98 (287)
T CHL00181 59 GLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVT 98 (287)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEec
Confidence 3457899999999999998887776543332 23444443
No 264
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=88.01 E-value=2.3 Score=53.66 Aligned_cols=42 Identities=24% Similarity=0.291 Sum_probs=31.6
Q ss_pred HHHHHHHHHHhhccCC---cEEEEcCCCchHHHHHHHHHHHHHhh
Q 042857 760 QLEALNWLRKCWHKSK---NVILADEMGLGKTVSACAFISSLYCE 801 (1404)
Q Consensus 760 QlegVnwL~~~~~~~~---~~ILADEMGLGKTiqaIa~L~~L~~~ 801 (1404)
|...+..|...+..++ ..||..+.|+|||..+-.|...+...
T Consensus 26 q~~vv~~L~~ai~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~ 70 (507)
T PRK06645 26 QEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAVNCS 70 (507)
T ss_pred cHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCc
Confidence 5555666655555553 67899999999999999998887654
No 265
>PRK08181 transposase; Validated
Probab=87.98 E-value=2.8 Score=48.82 Aligned_cols=45 Identities=24% Similarity=0.115 Sum_probs=34.1
Q ss_pred CCHHHHHHHHHHHHhhccCCcEEEEcCCCchHHHHHHHHHHHHHh
Q 042857 756 LFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYC 800 (1404)
Q Consensus 756 L~pyQlegVnwL~~~~~~~~~~ILADEMGLGKTiqaIa~L~~L~~ 800 (1404)
+-..|..++..+......+.+.+|....|.|||..+.++...+..
T Consensus 88 ~~~~~~~~L~~~~~~~~~~~nlll~Gp~GtGKTHLa~Aia~~a~~ 132 (269)
T PRK08181 88 VSKAQVMAIAAGDSWLAKGANLLLFGPPGGGKSHLAAAIGLALIE 132 (269)
T ss_pred CCHHHHHHHHHHHHHHhcCceEEEEecCCCcHHHHHHHHHHHHHH
Confidence 556677777554333356788999999999999999988877754
No 266
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=87.77 E-value=15 Score=41.65 Aligned_cols=27 Identities=30% Similarity=0.405 Sum_probs=22.5
Q ss_pred cCCcEEEEcCCCchHHHHHHHHHHHHH
Q 042857 773 KSKNVILADEMGLGKTVSACAFISSLY 799 (1404)
Q Consensus 773 ~~~~~ILADEMGLGKTiqaIa~L~~L~ 799 (1404)
+..+.|++...|.|||..+.++...|+
T Consensus 47 nmP~liisGpPG~GKTTsi~~LAr~LL 73 (333)
T KOG0991|consen 47 NMPNLIISGPPGTGKTTSILCLARELL 73 (333)
T ss_pred CCCceEeeCCCCCchhhHHHHHHHHHh
Confidence 346789999999999998888877665
No 267
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=87.68 E-value=5.2 Score=49.59 Aligned_cols=56 Identities=16% Similarity=0.269 Sum_probs=35.1
Q ss_pred CceEEEEccccccCCCccH---HHHHHhh--cccccEEEEeccCCCCChHHHHHHhhhhCC
Q 042857 889 PWEVLVVDEGHRLKNSGSK---LFSLLNS--FSFQHRVLLTGTPLQNNIGEMYNLLNFLQP 944 (1404)
Q Consensus 889 ~w~lVIVDEAHrlKN~~Sk---~~~~L~~--l~~~~rLLLTGTPlqNnl~EL~sLL~fL~P 944 (1404)
.+++||||-+-+....... +...+.. ......|+|++|+-.+.+.+++..+..+.+
T Consensus 299 ~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~~~l~~~~~~f~~~~~ 359 (424)
T PRK05703 299 DCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKYEDLKDIYKHFSRLPL 359 (424)
T ss_pred CCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCHHHHHHHHHHhCCCCC
Confidence 4789999998775432222 2233331 123446889999877777777777766654
No 268
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=87.56 E-value=6.2 Score=50.66 Aligned_cols=26 Identities=27% Similarity=0.419 Sum_probs=21.6
Q ss_pred EEEEcCCCchHHHHHHHHHHHHHhhc
Q 042857 777 VILADEMGLGKTVSACAFISSLYCEF 802 (1404)
Q Consensus 777 ~ILADEMGLGKTiqaIa~L~~L~~~~ 802 (1404)
.|+..+-|+|||..+-.|...+....
T Consensus 41 yLf~Gp~GtGKTt~Ak~lAkal~c~~ 66 (559)
T PRK05563 41 YLFSGPRGTGKTSAAKIFAKAVNCLN 66 (559)
T ss_pred EEEECCCCCCHHHHHHHHHHHhcCCC
Confidence 56799999999999999888776543
No 269
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=87.50 E-value=2.6 Score=54.35 Aligned_cols=43 Identities=23% Similarity=0.294 Sum_probs=31.7
Q ss_pred HHHHHHHHHHhhccCC---cEEEEcCCCchHHHHHHHHHHHHHhhc
Q 042857 760 QLEALNWLRKCWHKSK---NVILADEMGLGKTVSACAFISSLYCEF 802 (1404)
Q Consensus 760 QlegVnwL~~~~~~~~---~~ILADEMGLGKTiqaIa~L~~L~~~~ 802 (1404)
|-..+..|...+..++ ..||....|+|||..+..+...+....
T Consensus 29 q~~~v~~L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~ 74 (598)
T PRK09111 29 QEAMVRTLTNAFETGRIAQAFMLTGVRGVGKTTTARILARALNYEG 74 (598)
T ss_pred cHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhhCcCC
Confidence 4445555555555553 578999999999999999998887553
No 270
>PRK05580 primosome assembly protein PriA; Validated
Probab=87.48 E-value=4.1 Score=53.49 Aligned_cols=96 Identities=13% Similarity=0.214 Sum_probs=75.2
Q ss_pred hhhHHHHHHHHHHHHHHcCCeEEEEecchhHHHHHHHHHhhhcCCceEEEEeCCCCHHHHHHHHHHHhcCCCceEEEeec
Q 042857 1069 ASAKLTLLHSMLKVLYKEGHRVLIFSQMTKLLDILEDYLNIEFGPKTYERVDGSVSVGDRQAAITRFNQDKSRFVFLLST 1148 (1404)
Q Consensus 1069 ~SgKl~~L~kLL~kl~~~G~KVLIFSq~~~~LDiLed~L~~~f~g~~y~rLdGs~s~~eRq~~Id~Fn~~~s~~VfLLST 1148 (1404)
.|||......++......|.++||.++.......+.+.|...| +..+..++|+++..+|.+...+...+... +++.|
T Consensus 172 GSGKT~v~l~~i~~~l~~g~~vLvLvPt~~L~~Q~~~~l~~~f-g~~v~~~~s~~s~~~r~~~~~~~~~g~~~--IVVgT 248 (679)
T PRK05580 172 GSGKTEVYLQAIAEVLAQGKQALVLVPEIALTPQMLARFRARF-GAPVAVLHSGLSDGERLDEWRKAKRGEAK--VVIGA 248 (679)
T ss_pred CChHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHh-CCCEEEEECCCCHHHHHHHHHHHHcCCCC--EEEec
Confidence 4789988888888888889999999999999888888887766 56788999999999998888777655544 66777
Q ss_pred ccccccccccCCCEEEEEcC
Q 042857 1149 RSCGLGINLATADTVIIYDS 1168 (1404)
Q Consensus 1149 rAgG~GINL~~AdtVIi~Ds 1168 (1404)
+..- -+.+.....||+-+-
T Consensus 249 rsal-~~p~~~l~liVvDEe 267 (679)
T PRK05580 249 RSAL-FLPFKNLGLIIVDEE 267 (679)
T ss_pred cHHh-cccccCCCEEEEECC
Confidence 6432 355667777777664
No 271
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=87.36 E-value=2.5 Score=50.50 Aligned_cols=133 Identities=20% Similarity=0.204 Sum_probs=74.3
Q ss_pred HHHHHHHHHHHhhccC--CcE-EEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEeCCCChHHHHHHHHHHCCCCcEEE
Q 042857 759 HQLEALNWLRKCWHKS--KNV-ILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLSTMPNWLAEFALWAPNLNVVE 835 (1404)
Q Consensus 759 yQlegVnwL~~~~~~~--~~~-ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP~Sll~nW~rEf~kw~P~l~Vvv 835 (1404)
.|...+..|...+..+ .++ |+..+-|.|||..+..|+..+......... |-........-.....|+++++.
T Consensus 10 ~q~~~~~~L~~~~~~~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~-----~cg~C~~c~~~~~~~hpD~~~i~ 84 (329)
T PRK08058 10 LQPVVVKMLQNSIAKNRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVE-----PCGTCTNCKRIDSGNHPDVHLVA 84 (329)
T ss_pred hHHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCC-----CCCcCHHHHHHhcCCCCCEEEec
Confidence 3555666666666555 344 899999999999999999888755322211 33344444444444567877776
Q ss_pred EecchhHHHHHHHhhhccCCCCccccccCCCCceEEEeeHHHHHhhhccccCCCceEEEEccccccCCCccHHHHHHhhc
Q 042857 836 YHGCAKARAIIRQYEWHASDPDNLNKKTSSYKFNVLLTTYEMILADSSHLRGVPWEVLVVDEGHRLKNSGSKLFSLLNSF 915 (1404)
Q Consensus 836 y~G~~~~R~~ir~~E~~~~~~~~~~~~~~~~kfdVvITTYe~l~~d~~~L~~i~w~lVIVDEAHrlKN~~Sk~~~~L~~l 915 (1404)
..|..-..+.+++..- .+. ...+ .-.+.++||||+|++.. ......|+.+
T Consensus 85 ~~~~~i~id~ir~l~~-------------------------~~~-~~~~--~~~~kvviI~~a~~~~~--~a~NaLLK~L 134 (329)
T PRK08058 85 PDGQSIKKDQIRYLKE-------------------------EFS-KSGV--ESNKKVYIIEHADKMTA--SAANSLLKFL 134 (329)
T ss_pred cccccCCHHHHHHHHH-------------------------HHh-hCCc--ccCceEEEeehHhhhCH--HHHHHHHHHh
Confidence 6553222222222110 000 0011 12578999999999953 2333444444
Q ss_pred ---ccccEEEEecc
Q 042857 916 ---SFQHRVLLTGT 926 (1404)
Q Consensus 916 ---~~~~rLLLTGT 926 (1404)
.....++|+.+
T Consensus 135 EEPp~~~~~Il~t~ 148 (329)
T PRK08058 135 EEPSGGTTAILLTE 148 (329)
T ss_pred cCCCCCceEEEEeC
Confidence 34445666555
No 272
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=87.18 E-value=3 Score=53.01 Aligned_cols=42 Identities=29% Similarity=0.365 Sum_probs=29.3
Q ss_pred HHHHHHHHHHhhccCC--c-EEEEcCCCchHHHHHHHHHHHHHhh
Q 042857 760 QLEALNWLRKCWHKSK--N-VILADEMGLGKTVSACAFISSLYCE 801 (1404)
Q Consensus 760 QlegVnwL~~~~~~~~--~-~ILADEMGLGKTiqaIa~L~~L~~~ 801 (1404)
|-..+..|...+..+. + .|+..+.|.|||..+.+++..+...
T Consensus 19 qe~v~~~L~~~I~~grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~ 63 (535)
T PRK08451 19 QESVSKTLSLALDNNRLAHAYLFSGLRGSGKTSSARIFARALVCE 63 (535)
T ss_pred cHHHHHHHHHHHHcCCCCeeEEEECCCCCcHHHHHHHHHHHhcCC
Confidence 3444455555444443 2 3899999999999999999888654
No 273
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=87.16 E-value=3.4 Score=47.26 Aligned_cols=42 Identities=19% Similarity=0.304 Sum_probs=30.0
Q ss_pred CHHHHHHHHHHHHhhccCC-cEEEEcCCCchHHHHHHHHHHHH
Q 042857 757 FPHQLEALNWLRKCWHKSK-NVILADEMGLGKTVSACAFISSL 798 (1404)
Q Consensus 757 ~pyQlegVnwL~~~~~~~~-~~ILADEMGLGKTiqaIa~L~~L 798 (1404)
.+.+..+++.+...+..+. ..+|..+.|.|||..+-.++..+
T Consensus 25 ~~~~~~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl~~~l~~~l 67 (269)
T TIGR03015 25 SKGHKRAMAYLEYGLSQREGFILITGEVGAGKTTLIRNLLKRL 67 (269)
T ss_pred CHHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHhc
Confidence 3455667777766555554 47899999999998877765544
No 274
>PRK14873 primosome assembly protein PriA; Provisional
Probab=87.13 E-value=2.7 Score=54.86 Aligned_cols=96 Identities=18% Similarity=0.179 Sum_probs=77.7
Q ss_pred hhhHHHHHHHHHHHHHHcCCeEEEEecchhHHHHHHHHHhhhcCCceEEEEeCCCCHHHHHHHHHHHhcCCCceEEEeec
Q 042857 1069 ASAKLTLLHSMLKVLYKEGHRVLIFSQMTKLLDILEDYLNIEFGPKTYERVDGSVSVGDRQAAITRFNQDKSRFVFLLST 1148 (1404)
Q Consensus 1069 ~SgKl~~L~kLL~kl~~~G~KVLIFSq~~~~LDiLed~L~~~f~g~~y~rLdGs~s~~eRq~~Id~Fn~~~s~~VfLLST 1148 (1404)
.|||.+.+..++......|..+||...-......+...|..+|++..+..+|+.++..+|.+...+...+... |+|.|
T Consensus 170 GSGKTevyl~~i~~~l~~Gk~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~~~G~~~--IViGt 247 (665)
T PRK14873 170 GEDWARRLAAAAAATLRAGRGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLAVLRGQAR--VVVGT 247 (665)
T ss_pred CCcHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHHHhCCCCc--EEEEc
Confidence 5899999999999999999999999999999999999999988757789999999999999998887655544 67777
Q ss_pred ccccccccccCCCEEEEEc
Q 042857 1149 RSCGLGINLATADTVIIYD 1167 (1404)
Q Consensus 1149 rAgG~GINL~~AdtVIi~D 1167 (1404)
|++- =+-+..-..||+.|
T Consensus 248 RSAv-FaP~~~LgLIIvdE 265 (665)
T PRK14873 248 RSAV-FAPVEDLGLVAIWD 265 (665)
T ss_pred ceeE-EeccCCCCEEEEEc
Confidence 7642 23333444555554
No 275
>KOG1246 consensus DNA-binding protein jumonji/RBP2/SMCY, contains JmjC domain [General function prediction only]
Probab=86.84 E-value=0.76 Score=62.05 Aligned_cols=50 Identities=50% Similarity=1.197 Sum_probs=43.2
Q ss_pred ccccccccccCCCc--eEEcCCCCCcccccccCCCCCCCCCCCccCcccccc
Q 042857 73 GYYYECVICDLGGN--LLCCDSCPRTYHLQCLDPPLKRIPNGKWQCPKCTQK 122 (1404)
Q Consensus 73 ~~~~~C~~C~~~g~--ll~Cd~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~ 122 (1404)
.....|..|..+.. ++.|+.|...||.+|..||+..+|.|+|.|+.|...
T Consensus 153 ~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (904)
T KOG1246|consen 153 IDYPQCNTCSKGKEEKLLLCDSCDDSYHTYCLRPPLTRVPDGDWRCPKCIPT 204 (904)
T ss_pred ccchhhhccccCCCccceecccccCcccccccCCCCCcCCcCcccCCccccc
Confidence 34446899988764 349999999999999999999999999999999865
No 276
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=86.46 E-value=4.4 Score=49.20 Aligned_cols=43 Identities=16% Similarity=0.200 Sum_probs=34.9
Q ss_pred HHHHHHHHHHhhccCC---cEEEEcCCCchHHHHHHHHHHHHHhhc
Q 042857 760 QLEALNWLRKCWHKSK---NVILADEMGLGKTVSACAFISSLYCEF 802 (1404)
Q Consensus 760 QlegVnwL~~~~~~~~---~~ILADEMGLGKTiqaIa~L~~L~~~~ 802 (1404)
|-.+...|...+..++ ..|+....|+||+..+.+|+..++.+.
T Consensus 24 q~~~~~~L~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~ 69 (365)
T PRK07471 24 HAAAEAALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMARFLLATP 69 (365)
T ss_pred hHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHhCCC
Confidence 6667777777777663 467999999999999999999998754
No 277
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=86.39 E-value=5.3 Score=47.67 Aligned_cols=48 Identities=21% Similarity=0.266 Sum_probs=40.8
Q ss_pred CCCHHHHHHHHHHHHhhccCC---cEEEEcCCCchHHHHHHHHHHHHHhhc
Q 042857 755 ALFPHQLEALNWLRKCWHKSK---NVILADEMGLGKTVSACAFISSLYCEF 802 (1404)
Q Consensus 755 ~L~pyQlegVnwL~~~~~~~~---~~ILADEMGLGKTiqaIa~L~~L~~~~ 802 (1404)
.++|.|......|...+..++ ..++....|+||+..+.+|+..+....
T Consensus 4 ~~yPW~~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~ 54 (319)
T PRK08769 4 AFSPWQQRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALALAEHVLASG 54 (319)
T ss_pred cccccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHhCCC
Confidence 589999999999988877664 467899999999999999999988653
No 278
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=86.38 E-value=8.8 Score=50.07 Aligned_cols=42 Identities=29% Similarity=0.430 Sum_probs=29.3
Q ss_pred HHHHHHHHHHhhccCC---cEEEEcCCCchHHHHHHHHHHHHHhh
Q 042857 760 QLEALNWLRKCWHKSK---NVILADEMGLGKTVSACAFISSLYCE 801 (1404)
Q Consensus 760 QlegVnwL~~~~~~~~---~~ILADEMGLGKTiqaIa~L~~L~~~ 801 (1404)
|...+..|...+..++ ..||....|+|||..+.+|...+...
T Consensus 21 Qe~vv~~L~~ai~~~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~ 65 (709)
T PRK08691 21 QEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNCE 65 (709)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhccc
Confidence 4444444544444443 45899999999999999988877643
No 279
>PRK08116 hypothetical protein; Validated
Probab=86.21 E-value=4.9 Score=46.73 Aligned_cols=36 Identities=22% Similarity=0.352 Sum_probs=27.9
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEe
Q 042857 774 SKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLV 812 (1404)
Q Consensus 774 ~~~~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVv 812 (1404)
+.+.+|..+.|+|||..+.+++..+... ..+++++.
T Consensus 114 ~~gl~l~G~~GtGKThLa~aia~~l~~~---~~~v~~~~ 149 (268)
T PRK08116 114 NVGLLLWGSVGTGKTYLAACIANELIEK---GVPVIFVN 149 (268)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHc---CCeEEEEE
Confidence 3468999999999999999998888654 34565554
No 280
>PRK08084 DNA replication initiation factor; Provisional
Probab=86.08 E-value=2.7 Score=47.73 Aligned_cols=26 Identities=23% Similarity=0.174 Sum_probs=20.9
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHH
Q 042857 774 SKNVILADEMGLGKTVSACAFISSLY 799 (1404)
Q Consensus 774 ~~~~ILADEMGLGKTiqaIa~L~~L~ 799 (1404)
....+|..+.|+|||-.+.++...+.
T Consensus 45 ~~~l~l~Gp~G~GKThLl~a~~~~~~ 70 (235)
T PRK08084 45 SGYIYLWSREGAGRSHLLHAACAELS 70 (235)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 35789999999999988777766554
No 281
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=86.05 E-value=4.9 Score=53.29 Aligned_cols=59 Identities=15% Similarity=0.060 Sum_probs=43.4
Q ss_pred CCCCCHHHHHHHHHHHHhhccCCcEEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEeCCCCh
Q 042857 753 GGALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLSTM 817 (1404)
Q Consensus 753 g~~L~pyQlegVnwL~~~~~~~~~~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP~Sll 817 (1404)
+..|.+-|.+++..+.. .+.-.+|....|.|||...-+++..+.. ...++++++|+...
T Consensus 350 ~~~Ls~~Q~~Av~~i~~---s~~~~il~G~aGTGKTtll~~i~~~~~~---~g~~V~~~ApTg~A 408 (744)
T TIGR02768 350 HYRLSEEQYEAVRHVTG---SGDIAVVVGRAGTGKSTMLKAAREAWEA---AGYRVIGAALSGKA 408 (744)
T ss_pred cCCCCHHHHHHHHHHhc---CCCEEEEEecCCCCHHHHHHHHHHHHHh---CCCeEEEEeCcHHH
Confidence 45789999999987754 2456789999999999887666554432 23468888897655
No 282
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=85.88 E-value=3.8 Score=51.48 Aligned_cols=24 Identities=42% Similarity=0.540 Sum_probs=20.8
Q ss_pred EEEEcCCCchHHHHHHHHHHHHHh
Q 042857 777 VILADEMGLGKTVSACAFISSLYC 800 (1404)
Q Consensus 777 ~ILADEMGLGKTiqaIa~L~~L~~ 800 (1404)
.||..+.|+|||..|-+++..+..
T Consensus 39 ~Lf~GPpGtGKTTlA~~lA~~l~~ 62 (472)
T PRK14962 39 YIFAGPRGTGKTTVARILAKSLNC 62 (472)
T ss_pred EEEECCCCCCHHHHHHHHHHHhcc
Confidence 589999999999999888877653
No 283
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=85.70 E-value=6.9 Score=50.56 Aligned_cols=39 Identities=26% Similarity=0.413 Sum_probs=27.9
Q ss_pred HHHHHHHhhccC---CcEEEEcCCCchHHHHHHHHHHHHHhh
Q 042857 763 ALNWLRKCWHKS---KNVILADEMGLGKTVSACAFISSLYCE 801 (1404)
Q Consensus 763 gVnwL~~~~~~~---~~~ILADEMGLGKTiqaIa~L~~L~~~ 801 (1404)
.+..|...+.++ ...|+..+.|+|||..+..|...+...
T Consensus 24 v~~~L~~ai~~~ri~ha~Lf~GPpG~GKTtiArilAk~L~C~ 65 (624)
T PRK14959 24 VKAILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKALNCE 65 (624)
T ss_pred HHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhcccc
Confidence 344444444443 345689999999999999999888653
No 284
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=85.63 E-value=4.9 Score=47.30 Aligned_cols=40 Identities=23% Similarity=0.309 Sum_probs=25.7
Q ss_pred CceEEEEccccccCCCc--cHHHHHHhhcccccEEEEeccCC
Q 042857 889 PWEVLVVDEGHRLKNSG--SKLFSLLNSFSFQHRVLLTGTPL 928 (1404)
Q Consensus 889 ~w~lVIVDEAHrlKN~~--Sk~~~~L~~l~~~~rLLLTGTPl 928 (1404)
...+|||||+|++.... ..+...+.......++++|++..
T Consensus 100 ~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~ 141 (316)
T PHA02544 100 GGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNK 141 (316)
T ss_pred CCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCCh
Confidence 35689999999993322 22334455555666788888643
No 285
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities [].
Probab=85.62 E-value=3.2 Score=53.19 Aligned_cols=167 Identities=17% Similarity=0.166 Sum_probs=96.4
Q ss_pred CCCHHHHHHHHHHHHhhccCCcEEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEeCCCCh-HHHHHH-HHHHCCCCc
Q 042857 755 ALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLSTM-PNWLAE-FALWAPNLN 832 (1404)
Q Consensus 755 ~L~pyQlegVnwL~~~~~~~~~~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP~Sll-~nW~rE-f~kw~P~l~ 832 (1404)
...|||.+-++-|-.. .-..+.+.-..-+|||...+.++.+.+.. ..+|+|+|.|..-. ..|..+ |.-.+ .
T Consensus 16 ~~~Py~~eimd~~~~~--~v~~Vv~~k~aQ~GkT~~~~n~~g~~i~~--~P~~~l~v~Pt~~~a~~~~~~rl~Pmi---~ 88 (557)
T PF05876_consen 16 DRTPYLREIMDALSDP--SVREVVVMKSAQVGKTELLLNWIGYSIDQ--DPGPMLYVQPTDDAAKDFSKERLDPMI---R 88 (557)
T ss_pred CCChhHHHHHHhcCCc--CccEEEEEEcchhhHhHHHHhhceEEEEe--CCCCEEEEEEcHHHHHHHHHHHHHHHH---H
Confidence 5889999988766331 13567788788899999888888877644 34689999998654 566543 33222 1
Q ss_pred EEEEecchhHHHHHHHhhhccCCCCccccccCCCCceEEEeeHHHHHhhhccccCCCceEEEEcccccc----CCCccHH
Q 042857 833 VVEYHGCAKARAIIRQYEWHASDPDNLNKKTSSYKFNVLLTTYEMILADSSHLRGVPWEVLVVDEGHRL----KNSGSKL 908 (1404)
Q Consensus 833 Vvvy~G~~~~R~~ir~~E~~~~~~~~~~~~~~~~kfdVvITTYe~l~~d~~~L~~i~w~lVIVDEAHrl----KN~~Sk~ 908 (1404)
.++..+..+.... .......+. ......-.+.++... ....|.+...++|++||..++ ++.+...
T Consensus 89 -----~sp~l~~~~~~~~-~~~~~~t~~-~k~f~gg~l~~~ga~----S~~~l~s~~~r~~~~DEvD~~p~~~~~eGdp~ 157 (557)
T PF05876_consen 89 -----ASPVLRRKLSPSK-SRDSGNTIL-YKRFPGGFLYLVGAN----SPSNLRSRPARYLLLDEVDRYPDDVGGEGDPV 157 (557)
T ss_pred -----hCHHHHHHhCchh-hcccCCchh-heecCCCEEEEEeCC----CCcccccCCcCEEEEechhhccccCccCCCHH
Confidence 1111111111100 000000111 111112234444332 245688889999999999998 3334444
Q ss_pred HHHH---hhcccccEEEEeccCCCCChHHHHHHh
Q 042857 909 FSLL---NSFSFQHRVLLTGTPLQNNIGEMYNLL 939 (1404)
Q Consensus 909 ~~~L---~~l~~~~rLLLTGTPlqNnl~EL~sLL 939 (1404)
..+. ..+....++++..||......-++.+.
T Consensus 158 ~la~~R~~tf~~~~K~~~~STPt~~~~~~I~~~~ 191 (557)
T PF05876_consen 158 ELAEKRTKTFGSNRKILRISTPTIEGTSRIERLY 191 (557)
T ss_pred HHHHHHHhhhccCcEEEEeCCCCCCCCCHHHHHH
Confidence 4443 445567889999999877544444433
No 286
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=85.32 E-value=3.5 Score=53.45 Aligned_cols=42 Identities=26% Similarity=0.282 Sum_probs=31.5
Q ss_pred HHHHHHHHHHhhccC---CcEEEEcCCCchHHHHHHHHHHHHHhh
Q 042857 760 QLEALNWLRKCWHKS---KNVILADEMGLGKTVSACAFISSLYCE 801 (1404)
Q Consensus 760 QlegVnwL~~~~~~~---~~~ILADEMGLGKTiqaIa~L~~L~~~ 801 (1404)
|...+..|...+..+ ...|+..+.|+|||..+.+|+..+...
T Consensus 21 q~~i~~~L~~~l~~~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~ 65 (620)
T PRK14948 21 QEAIATTLKNALISNRIAPAYLFTGPRGTGKTSSARILAKSLNCL 65 (620)
T ss_pred hHHHHHHHHHHHHcCCCCceEEEECCCCCChHHHHHHHHHHhcCC
Confidence 455566665555554 345899999999999999999988754
No 287
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=85.28 E-value=3.1 Score=54.41 Aligned_cols=111 Identities=22% Similarity=0.297 Sum_probs=89.8
Q ss_pred EEecCCHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCcHHHHHHHHHhhhhHHHHH
Q 042857 997 VPVELSSIQAEYYRAMLTKNYQILRNIGKGVAQQSMLNIVMQLRKVCNHPYLIPGTEPDSGSVEFLHEMRIKASAKLTLL 1076 (1404)
Q Consensus 997 V~V~LS~~Qk~~Y~~il~~n~~~L~~~~kg~~~~sllnilm~LRK~cnHP~L~~~~e~~~~~~e~l~~~~i~~SgKl~~L 1076 (1404)
....+++.|...+..+.... -+.+|+|+.+. ..|||.++.
T Consensus 195 ~~~~Ln~~Q~~a~~~i~~~~-------------------------~~~~~~Ll~Gv---------------TGSGKTEvY 234 (730)
T COG1198 195 EWLALNQEQQAAVEAILSSL-------------------------GGFAPFLLDGV---------------TGSGKTEVY 234 (730)
T ss_pred cccccCHHHHHHHHHHHHhc-------------------------ccccceeEeCC---------------CCCcHHHHH
Confidence 34567888888887765431 13467777664 459999999
Q ss_pred HHHHHHHHHcCCeEEEEecchhHHHHHHHHHhhhcCCceEEEEeCCCCHHHHHHHHHHHhcCCCceEEEeeccc
Q 042857 1077 HSMLKVLYKEGHRVLIFSQMTKLLDILEDYLNIEFGPKTYERVDGSVSVGDRQAAITRFNQDKSRFVFLLSTRS 1150 (1404)
Q Consensus 1077 ~kLL~kl~~~G~KVLIFSq~~~~LDiLed~L~~~f~g~~y~rLdGs~s~~eRq~~Id~Fn~~~s~~VfLLSTrA 1150 (1404)
.+++.+..+.|+.+||...-+.....+...|..+|+ .++..+|.+.+..+|.....+...+... ++|-||.
T Consensus 235 l~~i~~~L~~GkqvLvLVPEI~Ltpq~~~rf~~rFg-~~v~vlHS~Ls~~er~~~W~~~~~G~~~--vVIGtRS 305 (730)
T COG1198 235 LEAIAKVLAQGKQVLVLVPEIALTPQLLARFKARFG-AKVAVLHSGLSPGERYRVWRRARRGEAR--VVIGTRS 305 (730)
T ss_pred HHHHHHHHHcCCEEEEEeccccchHHHHHHHHHHhC-CChhhhcccCChHHHHHHHHHHhcCCce--EEEEech
Confidence 999999999999999999999999999999999885 8899999999999999998888766555 4555554
No 288
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=85.25 E-value=11 Score=46.97 Aligned_cols=127 Identities=19% Similarity=0.194 Sum_probs=91.0
Q ss_pred hhHHHHHHH-HHHHHH--HcCCeEEEEecchhHHHHHHHHHhhhcCCceEEEEeCCCCHHHHHHHHHHHhcCCCceEEEe
Q 042857 1070 SAKLTLLHS-MLKVLY--KEGHRVLIFSQMTKLLDILEDYLNIEFGPKTYERVDGSVSVGDRQAAITRFNQDKSRFVFLL 1146 (1404)
Q Consensus 1070 SgKl~~L~k-LL~kl~--~~G~KVLIFSq~~~~LDiLed~L~~~f~g~~y~rLdGs~s~~eRq~~Id~Fn~~~s~~VfLL 1146 (1404)
..++....+ +|+.+. ....++|||.+.--..=.|..||... ++.|..++--++..+-..+-..|-.+... ++|.
T Consensus 280 d~Rf~yF~~~iLP~l~~~~~~~~~LIfIPSYfDfVRlRN~lk~~--~~sF~~i~EYts~~~isRAR~~F~~G~~~-iLL~ 356 (442)
T PF06862_consen 280 DARFKYFTKKILPQLKRDSKMSGTLIFIPSYFDFVRLRNYLKKE--NISFVQISEYTSNSDISRARSQFFHGRKP-ILLY 356 (442)
T ss_pred hHHHHHHHHHHHHHhhhccCCCcEEEEecchhhhHHHHHHHHhc--CCeEEEecccCCHHHHHHHHHHHHcCCce-EEEE
Confidence 355655555 777776 23468999988766666788888865 89999999999999999999999876544 4555
Q ss_pred ecccc-cccccccCCCEEEEEcCCCCHhHHHHHHHhhhccCC----CCcEEEEEEeeC
Q 042857 1147 STRSC-GLGINLATADTVIIYDSDFNPHADIQAMNRAHRIGQ----SKRLLVYRLVVR 1199 (1404)
Q Consensus 1147 STrAg-G~GINL~~AdtVIi~DsdWNP~~d~QAigRahRiGQ----~k~V~VYrLvt~ 1199 (1404)
+-|+- =.=..+.++.+||+|.+|-+|+-|...+.-...-.+ .....|.-|.++
T Consensus 357 TER~HFfrRy~irGi~~viFY~~P~~p~fY~El~n~~~~~~~~~~~~~~~~~~~lysk 414 (442)
T PF06862_consen 357 TERFHFFRRYRIRGIRHVIFYGPPENPQFYSELLNMLDESSGGEVDAADATVTVLYSK 414 (442)
T ss_pred EhHHhhhhhceecCCcEEEEECCCCChhHHHHHHhhhcccccccccccCceEEEEecH
Confidence 55442 223456789999999999999999988865554333 233455555555
No 289
>KOG4443 consensus Putative transcription factor HALR/MLL3, involved in embryonic development [General function prediction only]
Probab=85.18 E-value=0.23 Score=62.12 Aligned_cols=48 Identities=31% Similarity=0.875 Sum_probs=36.6
Q ss_pred cccccccccCCC-----ceEEcCCCCCcccccccCCCCCCCC-CCCccCccccc
Q 042857 74 YYYECVICDLGG-----NLLCCDSCPRTYHLQCLDPPLKRIP-NGKWQCPKCTQ 121 (1404)
Q Consensus 74 ~~~~C~~C~~~g-----~ll~Cd~C~~~~H~~Cl~Ppl~~~P-~g~W~C~~C~~ 121 (1404)
.+..|.+|...| .|+.|..|..-||.+|+.-.+...- .+.|.||.|+.
T Consensus 17 ~~~mc~l~~s~G~~~ag~m~ac~~c~~~yH~~cvt~~~~~~~l~~gWrC~~crv 70 (694)
T KOG4443|consen 17 VCLMCPLCGSSGKGRAGRLLACSDCGQKYHPYCVTSWAQHAVLSGGWRCPSCRV 70 (694)
T ss_pred hhhhhhhhccccccccCcchhhhhhcccCCcchhhHHHhHHHhcCCcccCCcee
Confidence 455688887654 4999999999999999996554432 34599999984
No 290
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=84.55 E-value=4.3 Score=52.11 Aligned_cols=25 Identities=44% Similarity=0.623 Sum_probs=21.9
Q ss_pred EEEEcCCCchHHHHHHHHHHHHHhh
Q 042857 777 VILADEMGLGKTVSACAFISSLYCE 801 (1404)
Q Consensus 777 ~ILADEMGLGKTiqaIa~L~~L~~~ 801 (1404)
.|+..+.|.|||..+.+++..+...
T Consensus 41 yLf~Gp~G~GKTt~Ar~lAk~L~c~ 65 (563)
T PRK06647 41 YIFSGPRGVGKTSSARAFARCLNCV 65 (563)
T ss_pred EEEECCCCCCHHHHHHHHHHhhccc
Confidence 5899999999999999998887654
No 291
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=84.09 E-value=0.99 Score=56.39 Aligned_cols=36 Identities=22% Similarity=0.201 Sum_probs=26.8
Q ss_pred cCCCchHHHHHHHHHHHHHhhccCCCcEEEEeCC-CChH
Q 042857 781 DEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPL-STMP 818 (1404)
Q Consensus 781 DEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP~-Sll~ 818 (1404)
..+|.|||+++.++|.+++..+- +.||..|-. +++.
T Consensus 4 matgsgkt~~ma~lil~~y~kgy--r~flffvnq~nile 40 (812)
T COG3421 4 MATGSGKTLVMAGLILECYKKGY--RNFLFFVNQANILE 40 (812)
T ss_pred cccCCChhhHHHHHHHHHHHhch--hhEEEEecchhHHH
Confidence 45899999999999999886543 358877753 4443
No 292
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=84.08 E-value=6.7 Score=49.49 Aligned_cols=41 Identities=27% Similarity=0.340 Sum_probs=29.4
Q ss_pred HHHHHHHHHHhhccCC--cE-EEEcCCCchHHHHHHHHHHHHHh
Q 042857 760 QLEALNWLRKCWHKSK--NV-ILADEMGLGKTVSACAFISSLYC 800 (1404)
Q Consensus 760 QlegVnwL~~~~~~~~--~~-ILADEMGLGKTiqaIa~L~~L~~ 800 (1404)
|...+..|......+. ++ |+..+.|.|||..+..+...+..
T Consensus 21 q~~i~~~L~~~i~~~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c 64 (486)
T PRK14953 21 QEIVVRILKNAVKLQRVSHAYIFAGPRGTGKTTIARILAKVLNC 64 (486)
T ss_pred hHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 5556666666555542 33 68999999999999888877754
No 293
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=84.05 E-value=11 Score=44.27 Aligned_cols=40 Identities=30% Similarity=0.428 Sum_probs=27.4
Q ss_pred HHHHHHHHHHhhccC--CcEEEEcCCCchHHHHHHHHHHHHH
Q 042857 760 QLEALNWLRKCWHKS--KNVILADEMGLGKTVSACAFISSLY 799 (1404)
Q Consensus 760 QlegVnwL~~~~~~~--~~~ILADEMGLGKTiqaIa~L~~L~ 799 (1404)
|.+.+..+......+ .+.+|..+.|.|||..+-+++..+.
T Consensus 22 ~~~~~~~l~~~i~~~~~~~~ll~G~~G~GKt~~~~~l~~~l~ 63 (319)
T PRK00440 22 QEEIVERLKSYVKEKNMPHLLFAGPPGTGKTTAALALARELY 63 (319)
T ss_pred cHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHc
Confidence 334444454444333 3589999999999998888877664
No 294
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=83.85 E-value=6 Score=47.66 Aligned_cols=47 Identities=28% Similarity=0.434 Sum_probs=36.1
Q ss_pred CCHHHHHHHHHHHHhhccCC-cEEEEcCCCchHHHHHHHHHHHHHhhc
Q 042857 756 LFPHQLEALNWLRKCWHKSK-NVILADEMGLGKTVSACAFISSLYCEF 802 (1404)
Q Consensus 756 L~pyQlegVnwL~~~~~~~~-~~ILADEMGLGKTiqaIa~L~~L~~~~ 802 (1404)
++|+|...-+.|...-.+-. ..++....|+|||..+..|...+....
T Consensus 2 ~yPW~~~~~~~l~~~~~rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~ 49 (342)
T PRK06964 2 LYPWQTDDWNRLQALRARLPHALLLHGQAGIGKLDFAQHLAQGLLCET 49 (342)
T ss_pred CCcccHHHHHHHHHhcCCcceEEEEECCCCCCHHHHHHHHHHHHcCCC
Confidence 57888888887777522223 346889999999999999999988754
No 295
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=83.85 E-value=0.9 Score=60.69 Aligned_cols=37 Identities=24% Similarity=0.568 Sum_probs=31.2
Q ss_pred EEEEEEecCccccccccCCHHHHHHHHHHHHHHHHHh
Q 042857 612 YEFLVKWVGKSNIHNSWIPESQLKVLAKRKLENYKAK 648 (1404)
Q Consensus 612 ~eylVKw~~~Sy~h~~Wv~e~~l~~~~~~~l~~~~~k 648 (1404)
.+|||||.++.|-.|+|..++.+......-+..|+.+
T Consensus 300 ~eYLvKW~~LpY~e~TWE~~~~I~~~~~~~~~~~~~R 336 (1373)
T KOG0384|consen 300 PEYLVKWRGLPYEECTWEDAEDIAKKAQEEIEEFQSR 336 (1373)
T ss_pred ceeEEEecCCCcccccccchhhhhhhHHHHHHHHhhh
Confidence 7999999999999999999999887766666666543
No 296
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=83.83 E-value=8.2 Score=47.33 Aligned_cols=36 Identities=17% Similarity=0.225 Sum_probs=24.7
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEeC
Q 042857 775 KNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVP 813 (1404)
Q Consensus 775 ~~~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP 813 (1404)
....|....|.|||..+..+...+... ...++++..
T Consensus 242 ~vI~LVGptGvGKTTTiaKLA~~L~~~---GkkVglI~a 277 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMAWQFHGK---KKTVGFITT 277 (436)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHHc---CCcEEEEec
Confidence 345688899999999888887766422 234555553
No 297
>PF13173 AAA_14: AAA domain
Probab=83.62 E-value=4.7 Score=41.11 Aligned_cols=39 Identities=21% Similarity=0.203 Sum_probs=26.3
Q ss_pred CceEEEEccccccCCCccHHHHHHhhcccccEEEEeccCC
Q 042857 889 PWEVLVVDEGHRLKNSGSKLFSLLNSFSFQHRVLLTGTPL 928 (1404)
Q Consensus 889 ~w~lVIVDEAHrlKN~~Sk~~~~L~~l~~~~rLLLTGTPl 928 (1404)
.-.+||+||+|++.+....+...+... ...++++||.-.
T Consensus 61 ~~~~i~iDEiq~~~~~~~~lk~l~d~~-~~~~ii~tgS~~ 99 (128)
T PF13173_consen 61 GKKYIFIDEIQYLPDWEDALKFLVDNG-PNIKIILTGSSS 99 (128)
T ss_pred CCcEEEEehhhhhccHHHHHHHHHHhc-cCceEEEEccch
Confidence 345899999999976544333333322 456899999853
No 298
>PF13245 AAA_19: Part of AAA domain
Probab=83.58 E-value=3.2 Score=38.97 Aligned_cols=45 Identities=27% Similarity=0.289 Sum_probs=34.5
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHHhh--ccCCCcEEEEeCCCChHH
Q 042857 774 SKNVILADEMGLGKTVSACAFISSLYCE--FKAKLPCLVLVPLSTMPN 819 (1404)
Q Consensus 774 ~~~~ILADEMGLGKTiqaIa~L~~L~~~--~~~~gP~LIVvP~Sll~n 819 (1404)
+.-.++....|.|||.+++..+.++... .. ..++||++|.....+
T Consensus 10 ~~~~vv~g~pGtGKT~~~~~~i~~l~~~~~~~-~~~vlv~a~t~~aa~ 56 (76)
T PF13245_consen 10 SPLFVVQGPPGTGKTTTLAARIAELLAARADP-GKRVLVLAPTRAAAD 56 (76)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHHhcCC-CCeEEEECCCHHHHH
Confidence 3445668999999999999999888743 33 568999999875543
No 299
>PHA03333 putative ATPase subunit of terminase; Provisional
Probab=83.45 E-value=9.5 Score=49.45 Aligned_cols=150 Identities=14% Similarity=0.208 Sum_probs=80.0
Q ss_pred CHHHHHHHHHHHHhhccCCcEEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEeCCC-ChHHHHHH----HH-----H
Q 042857 757 FPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLS-TMPNWLAE----FA-----L 826 (1404)
Q Consensus 757 ~pyQlegVnwL~~~~~~~~~~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP~S-ll~nW~rE----f~-----k 826 (1404)
-|+=++-++.+...|.+.-.++++ +=|-|||..+..++..+.... ...++|.+|.- +...-.+. ++ .
T Consensus 171 ~~~~~~~id~~~~~fkq~~tV~ta-PRqrGKS~iVgi~l~~La~f~--Gi~IlvTAH~~~ts~evF~rv~~~le~lg~~~ 247 (752)
T PHA03333 171 SPRTLREIDRIFDEYGKCYTAATV-PRRCGKTTIMAIILAAMISFL--EIDIVVQAQRKTMCLTLYNRVETVVHAYQHKP 247 (752)
T ss_pred ChhhHHHHHHHHHHHhhcceEEEe-ccCCCcHHHHHHHHHHHHHhc--CCeEEEECCChhhHHHHHHHHHHHHHHhcccc
Confidence 455566677788888777777776 689999988877776665322 24688888853 22222222 33 5
Q ss_pred HCCCCcEEE-EecchhHHHHHHHhhhccCCCCccccccCCCCceEEEeeHHHHHhhhccccCCCceEEEEccccccCCCc
Q 042857 827 WAPNLNVVE-YHGCAKARAIIRQYEWHASDPDNLNKKTSSYKFNVLLTTYEMILADSSHLRGVPWEVLVVDEGHRLKNSG 905 (1404)
Q Consensus 827 w~P~l~Vvv-y~G~~~~R~~ir~~E~~~~~~~~~~~~~~~~kfdVvITTYe~l~~d~~~L~~i~w~lVIVDEAHrlKN~~ 905 (1404)
|+|....++ ..|+.. ..+|...+.. ..++--+...+ +..+..+...+++||||||+-+..
T Consensus 248 ~fp~~~~iv~vkgg~E------~I~f~~p~ga------k~G~sti~F~A-----rs~~s~RG~~~DLLIVDEAAfI~~-- 308 (752)
T PHA03333 248 WFPEEFKIVTLKGTDE------NLEYISDPAA------KEGKTTAHFLA-----SSPNAARGQNPDLVIVDEAAFVNP-- 308 (752)
T ss_pred ccCCCceEEEeeCCee------EEEEecCccc------ccCcceeEEec-----ccCCCcCCCCCCEEEEECcccCCH--
Confidence 666553222 332211 0111111100 00001111111 113445667789999999999965
Q ss_pred cHHHHHHhhcc-cccEEEEeccCC
Q 042857 906 SKLFSLLNSFS-FQHRVLLTGTPL 928 (1404)
Q Consensus 906 Sk~~~~L~~l~-~~~rLLLTGTPl 928 (1404)
..+...+=-+. ...++++..+|.
T Consensus 309 ~~l~aIlP~l~~~~~k~IiISS~~ 332 (752)
T PHA03333 309 GALLSVLPLMAVKGTKQIHISSPV 332 (752)
T ss_pred HHHHHHHHHHccCCCceEEEeCCC
Confidence 22333332222 456677766764
No 300
>PRK04195 replication factor C large subunit; Provisional
Probab=83.12 E-value=14 Score=46.60 Aligned_cols=43 Identities=28% Similarity=0.294 Sum_probs=29.4
Q ss_pred CCHHHHHHHHHHHHhhcc---CCcEEEEcCCCchHHHHHHHHHHHH
Q 042857 756 LFPHQLEALNWLRKCWHK---SKNVILADEMGLGKTVSACAFISSL 798 (1404)
Q Consensus 756 L~pyQlegVnwL~~~~~~---~~~~ILADEMGLGKTiqaIa~L~~L 798 (1404)
..+.+.+.+.-++..|.+ ....+|..+.|+|||..+-+++..+
T Consensus 18 g~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el 63 (482)
T PRK04195 18 GNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDY 63 (482)
T ss_pred CCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 345555555444455554 4678999999999998887776554
No 301
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=82.92 E-value=7.2 Score=50.29 Aligned_cols=43 Identities=23% Similarity=0.341 Sum_probs=29.5
Q ss_pred HHHHHHHHHHhhccC--Cc-EEEEcCCCchHHHHHHHHHHHHHhhc
Q 042857 760 QLEALNWLRKCWHKS--KN-VILADEMGLGKTVSACAFISSLYCEF 802 (1404)
Q Consensus 760 QlegVnwL~~~~~~~--~~-~ILADEMGLGKTiqaIa~L~~L~~~~ 802 (1404)
|...+..|......+ .+ .|+..+-|.|||..+..|+..+....
T Consensus 21 q~~v~~~L~~~i~~~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~ 66 (576)
T PRK14965 21 QEHVSRTLQNAIDTGRVAHAFLFTGARGVGKTSTARILAKALNCEQ 66 (576)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhcCCC
Confidence 334444454444444 23 47999999999999999998886543
No 302
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=82.82 E-value=6.2 Score=51.14 Aligned_cols=42 Identities=21% Similarity=0.365 Sum_probs=32.3
Q ss_pred HHHHHHHHHHhhccC---CcEEEEcCCCchHHHHHHHHHHHHHhh
Q 042857 760 QLEALNWLRKCWHKS---KNVILADEMGLGKTVSACAFISSLYCE 801 (1404)
Q Consensus 760 QlegVnwL~~~~~~~---~~~ILADEMGLGKTiqaIa~L~~L~~~ 801 (1404)
|...+..|...+..+ ...|+...-|.|||..|..|...+...
T Consensus 21 Qe~i~~~L~~~i~~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~ 65 (620)
T PRK14954 21 QEHITHTIQNSLRMDRVGHGYIFSGLRGVGKTTAARVFAKAVNCQ 65 (620)
T ss_pred cHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 566666677766554 236799999999999999999888654
No 303
>PRK14974 cell division protein FtsY; Provisional
Probab=82.61 E-value=9.2 Score=46.00 Aligned_cols=35 Identities=14% Similarity=0.206 Sum_probs=23.8
Q ss_pred cEEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEeC
Q 042857 776 NVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVP 813 (1404)
Q Consensus 776 ~~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP 813 (1404)
-.++....|.|||.++..++..+... ..+++++..
T Consensus 142 vi~~~G~~GvGKTTtiakLA~~l~~~---g~~V~li~~ 176 (336)
T PRK14974 142 VIVFVGVNGTGKTTTIAKLAYYLKKN---GFSVVIAAG 176 (336)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHc---CCeEEEecC
Confidence 35688899999999887777665432 234555543
No 304
>smart00491 HELICc2 helicase superfamily c-terminal domain.
Probab=82.17 E-value=6.5 Score=41.38 Aligned_cols=52 Identities=23% Similarity=0.417 Sum_probs=34.1
Q ss_pred EEeCCCCHHHHHHHHHHHhcCCC-ceEEEeeccc--ccccccccC--CCEEEEEcCCC
Q 042857 1118 RVDGSVSVGDRQAAITRFNQDKS-RFVFLLSTRS--CGLGINLAT--ADTVIIYDSDF 1170 (1404)
Q Consensus 1118 rLdGs~s~~eRq~~Id~Fn~~~s-~~VfLLSTrA--gG~GINL~~--AdtVIi~DsdW 1170 (1404)
.+.+... .+..++++.|+.... .-.+|+++.. ..+||||+. +..|||...|+
T Consensus 24 ~~e~~~~-~~~~~~l~~f~~~~~~~g~iL~~v~~G~~~EGiD~~g~~~r~vii~glPf 80 (142)
T smart00491 24 FIEGKDS-GETEELLEKYSAACEARGALLLAVARGKVSEGIDFPDDLGRAVIIVGIPF 80 (142)
T ss_pred EEECCCC-chHHHHHHHHHHhcCCCCEEEEEEeCCeeecceecCCCccEEEEEEecCC
Confidence 3444332 345788899986432 1135555544 799999976 68899988775
No 305
>PHA02533 17 large terminase protein; Provisional
Probab=82.14 E-value=10 Score=48.41 Aligned_cols=56 Identities=18% Similarity=0.105 Sum_probs=37.8
Q ss_pred CCCCHHHHHHHHHHHHhhccCCcEEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEeCC
Q 042857 754 GALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPL 814 (1404)
Q Consensus 754 ~~L~pyQlegVnwL~~~~~~~~~~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP~ 814 (1404)
..|.|+|..-+..|.. ++-.++.-.=..|||..+.+++.++.... ...-+++++|.
T Consensus 58 f~L~p~Q~~i~~~~~~----~R~~ii~~aRq~GKStl~a~~al~~a~~~-~~~~v~i~A~~ 113 (534)
T PHA02533 58 VQMRDYQKDMLKIMHK----NRFNACNLSRQLGKTTVVAIFLLHYVCFN-KDKNVGILAHK 113 (534)
T ss_pred cCCcHHHHHHHHHHhc----CeEEEEEEcCcCChHHHHHHHHHHHHHhC-CCCEEEEEeCC
Confidence 4699999998877632 34446666778999998887665544322 23357777774
No 306
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=82.10 E-value=8 Score=49.02 Aligned_cols=42 Identities=19% Similarity=0.329 Sum_probs=30.1
Q ss_pred HHHHHHHHHHhhccCC--cE-EEEcCCCchHHHHHHHHHHHHHhh
Q 042857 760 QLEALNWLRKCWHKSK--NV-ILADEMGLGKTVSACAFISSLYCE 801 (1404)
Q Consensus 760 QlegVnwL~~~~~~~~--~~-ILADEMGLGKTiqaIa~L~~L~~~ 801 (1404)
|...+..|......+. +. |+..+.|+|||..+.+|+..+...
T Consensus 19 q~~v~~~L~~~i~~~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~ 63 (504)
T PRK14963 19 QEHVKEVLLAALRQGRLGHAYLFSGPRGVGKTTTARLIAMAVNCS 63 (504)
T ss_pred hHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHhcc
Confidence 4455555555444443 33 899999999999999998887654
No 307
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=81.85 E-value=11 Score=48.51 Aligned_cols=43 Identities=23% Similarity=0.241 Sum_probs=30.0
Q ss_pred HHHHHHHHHHhhccC---CcEEEEcCCCchHHHHHHHHHHHHHhhc
Q 042857 760 QLEALNWLRKCWHKS---KNVILADEMGLGKTVSACAFISSLYCEF 802 (1404)
Q Consensus 760 QlegVnwL~~~~~~~---~~~ILADEMGLGKTiqaIa~L~~L~~~~ 802 (1404)
|-..+..|...+..+ ...|+..+.|.|||..|.++...+....
T Consensus 21 Qe~iv~~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~ 66 (605)
T PRK05896 21 QELIKKILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAINCLN 66 (605)
T ss_pred cHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCCC
Confidence 334445555555443 3357899999999999999998886543
No 308
>PRK06835 DNA replication protein DnaC; Validated
Probab=81.79 E-value=14 Score=44.41 Aligned_cols=48 Identities=15% Similarity=0.106 Sum_probs=34.5
Q ss_pred CCCCHHHHHHHHHHHH----hhccCCcEEEEcCCCchHHHHHHHHHHHHHhh
Q 042857 754 GALFPHQLEALNWLRK----CWHKSKNVILADEMGLGKTVSACAFISSLYCE 801 (1404)
Q Consensus 754 ~~L~pyQlegVnwL~~----~~~~~~~~ILADEMGLGKTiqaIa~L~~L~~~ 801 (1404)
+..+.++..++.++.. .-..+.+.+|..++|+|||..+.+++..+...
T Consensus 159 ~~~~~~~~~~~~~~~~f~~~f~~~~~~Lll~G~~GtGKThLa~aIa~~l~~~ 210 (329)
T PRK06835 159 LSPRKNMEKILEKCKNFIENFDKNNENLLFYGNTGTGKTFLSNCIAKELLDR 210 (329)
T ss_pred CCHHHHHHHHHHHHHHHHHHHhccCCcEEEECCCCCcHHHHHHHHHHHHHHC
Confidence 3556666666664432 22245788999999999999999988887643
No 309
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=81.73 E-value=7.5 Score=50.19 Aligned_cols=41 Identities=22% Similarity=0.403 Sum_probs=30.5
Q ss_pred HHHHHHHHHHhhccCC--c-EEEEcCCCchHHHHHHHHHHHHHh
Q 042857 760 QLEALNWLRKCWHKSK--N-VILADEMGLGKTVSACAFISSLYC 800 (1404)
Q Consensus 760 QlegVnwL~~~~~~~~--~-~ILADEMGLGKTiqaIa~L~~L~~ 800 (1404)
|-..+..|...+..+. + .||..+.|+|||..+..|+..+..
T Consensus 21 q~~~~~~L~~~i~~~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c 64 (585)
T PRK14950 21 QEHVVQTLRNAIAEGRVAHAYLFTGPRGVGKTSTARILAKAVNC 64 (585)
T ss_pred CHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 5556666666555543 2 389999999999999999888754
No 310
>KOG3612 consensus PHD Zn-finger protein [General function prediction only]
Probab=81.69 E-value=1.3 Score=54.62 Aligned_cols=47 Identities=28% Similarity=0.487 Sum_probs=38.5
Q ss_pred cccccccccCCCceEEcCCCCCcccccccCCCCCCCCC--CCccCccccc
Q 042857 74 YYYECVICDLGGNLLCCDSCPRTYHLQCLDPPLKRIPN--GKWQCPKCTQ 121 (1404)
Q Consensus 74 ~~~~C~~C~~~g~ll~Cd~C~~~~H~~Cl~Ppl~~~P~--g~W~C~~C~~ 121 (1404)
.+.+|+-|.-+|..|.|+.|-|.||..|..|- ..++. .-|.||.|..
T Consensus 59 ~d~~cfechlpg~vl~c~vc~Rs~h~~c~sp~-~q~r~~s~p~~~p~p~s 107 (588)
T KOG3612|consen 59 IDPFCFECHLPGAVLKCIVCHRSFHENCQSPD-PQKRNYSVPSDKPQPYS 107 (588)
T ss_pred CCcccccccCCcceeeeehhhccccccccCcc-hhhccccccccCCcccc
Confidence 34579999999999999999999999999984 44443 3499998874
No 311
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=81.45 E-value=8.5 Score=52.33 Aligned_cols=60 Identities=13% Similarity=0.026 Sum_probs=41.4
Q ss_pred CCCCCHHHHHHHHHHHHhhccCCcEEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEeCCCChH
Q 042857 753 GGALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLSTMP 818 (1404)
Q Consensus 753 g~~L~pyQlegVnwL~~~~~~~~~~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP~Sll~ 818 (1404)
|..|.+-|.++|..+.. ...-++|..--|+|||.+.-+ +..++... ...+++++|+....
T Consensus 344 g~~Ls~eQr~Av~~il~---s~~v~vv~G~AGTGKTT~l~~-~~~~~e~~--G~~V~~~ApTGkAA 403 (988)
T PRK13889 344 GLVLSGEQADALAHVTD---GRDLGVVVGYAGTGKSAMLGV-AREAWEAA--GYEVRGAALSGIAA 403 (988)
T ss_pred CCCCCHHHHHHHHHHhc---CCCeEEEEeCCCCCHHHHHHH-HHHHHHHc--CCeEEEecCcHHHH
Confidence 55799999999987754 233578999999999986443 44333322 33578888876543
No 312
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]
Probab=81.12 E-value=5.7 Score=52.54 Aligned_cols=160 Identities=16% Similarity=0.148 Sum_probs=89.6
Q ss_pred CCCHHHHHHHHHHHHhhccCCcEEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEeC-CCChHHHHHHHHHHCCCCcE
Q 042857 755 ALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVP-LSTMPNWLAEFALWAPNLNV 833 (1404)
Q Consensus 755 ~L~pyQlegVnwL~~~~~~~~~~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP-~Sll~nW~rEf~kw~P~l~V 833 (1404)
.|-.-|+.|+...+. ...-.++-.-.|+|||-+...++..|...+ ..+|+.+= .+.+.|-.--+..+. +.+
T Consensus 669 ~LN~dQr~A~~k~L~---aedy~LI~GMPGTGKTTtI~~LIkiL~~~g---kkVLLtsyThsAVDNILiKL~~~~--i~~ 740 (1100)
T KOG1805|consen 669 RLNNDQRQALLKALA---AEDYALILGMPGTGKTTTISLLIKILVALG---KKVLLTSYTHSAVDNILIKLKGFG--IYI 740 (1100)
T ss_pred hcCHHHHHHHHHHHh---ccchheeecCCCCCchhhHHHHHHHHHHcC---CeEEEEehhhHHHHHHHHHHhccC--cce
Confidence 577889999865544 234455555679999999888888887543 35777774 467788866666542 222
Q ss_pred EEEecchhHHHHHHHhhhccCCC--Cccc-cccCCCCceEEEeeHHHHHhhhccccCCCceEEEEccccccCCCccHHHH
Q 042857 834 VEYHGCAKARAIIRQYEWHASDP--DNLN-KKTSSYKFNVLLTTYEMILADSSHLRGVPWEVLVVDEGHRLKNSGSKLFS 910 (1404)
Q Consensus 834 vvy~G~~~~R~~ir~~E~~~~~~--~~~~-~~~~~~kfdVvITTYe~l~~d~~~L~~i~w~lVIVDEAHrlKN~~Sk~~~ 910 (1404)
+-.-........++++-. .... ..+. -+.......||.+|---+. ...|..-+||++|||||-.+-- --
T Consensus 741 lRLG~~~kih~~v~e~~~-~~~~s~ks~~~l~~~~~~~~IVa~TClgi~--~plf~~R~FD~cIiDEASQI~l-----P~ 812 (1100)
T KOG1805|consen 741 LRLGSEEKIHPDVEEFTL-TNETSEKSYADLKKFLDQTSIVACTCLGIN--HPLFVNRQFDYCIIDEASQILL-----PL 812 (1100)
T ss_pred eecCCccccchHHHHHhc-ccccchhhHHHHHHHhCCCcEEEEEccCCC--chhhhccccCEEEEcccccccc-----ch
Confidence 211111222223333221 0000 0000 0011123456666543222 2345566799999999976632 23
Q ss_pred HHhhcccccEEEEeccCCCC
Q 042857 911 LLNSFSFQHRVLLTGTPLQN 930 (1404)
Q Consensus 911 ~L~~l~~~~rLLLTGTPlqN 930 (1404)
.|--+....++.|-|-+.|=
T Consensus 813 ~LgPL~~s~kFVLVGDh~QL 832 (1100)
T KOG1805|consen 813 CLGPLSFSNKFVLVGDHYQL 832 (1100)
T ss_pred hhhhhhhcceEEEecccccC
Confidence 44556677889999977553
No 313
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=81.09 E-value=10 Score=45.24 Aligned_cols=48 Identities=17% Similarity=0.304 Sum_probs=40.3
Q ss_pred CCCHHHHHHHHHHHHhhccCC---cEEEEcCCCchHHHHHHHHHHHHHhhc
Q 042857 755 ALFPHQLEALNWLRKCWHKSK---NVILADEMGLGKTVSACAFISSLYCEF 802 (1404)
Q Consensus 755 ~L~pyQlegVnwL~~~~~~~~---~~ILADEMGLGKTiqaIa~L~~L~~~~ 802 (1404)
.++|+|......+...+..++ ..++....|+||+..|..|+..+....
T Consensus 3 ~~yPWl~~~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~ 53 (319)
T PRK06090 3 NDYPWLVPVWQNWKAGLDAGRIPGALLLQSDEGLGVESLVELFSRALLCQN 53 (319)
T ss_pred cCcccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHcCCC
Confidence 478999999888888776664 467899999999999999999988654
No 314
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=80.95 E-value=5 Score=47.15 Aligned_cols=42 Identities=26% Similarity=0.373 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHhhcc--CCcEEEEcCCCchHHHHHHHHHHHHHh
Q 042857 759 HQLEALNWLRKCWHK--SKNVILADEMGLGKTVSACAFISSLYC 800 (1404)
Q Consensus 759 yQlegVnwL~~~~~~--~~~~ILADEMGLGKTiqaIa~L~~L~~ 800 (1404)
+|-..|+-|...... ..+.++....|+|||-++++|...+..
T Consensus 40 gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTStalafar~L~~ 83 (346)
T KOG0989|consen 40 GQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTALAFARALNC 83 (346)
T ss_pred chHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHHHHHHHHhcC
Confidence 588888877665554 356789999999999999999998864
No 315
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=80.86 E-value=7.9 Score=45.34 Aligned_cols=31 Identities=29% Similarity=0.483 Sum_probs=25.3
Q ss_pred cCCc-EEEEcCCCchHHHHHHHHHHHHHhhcc
Q 042857 773 KSKN-VILADEMGLGKTVSACAFISSLYCEFK 803 (1404)
Q Consensus 773 ~~~~-~ILADEMGLGKTiqaIa~L~~L~~~~~ 803 (1404)
+... .+|....|.|||..+.++...+.....
T Consensus 22 ~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~ 53 (325)
T COG0470 22 RLPHALLFYGPPGVGKTTAALALAKELLCENP 53 (325)
T ss_pred CCCceeeeeCCCCCCHHHHHHHHHHHHhCCCc
Confidence 3455 789999999999999999998875543
No 316
>PF06733 DEAD_2: DEAD_2; InterPro: IPR010614 This represents a conserved region within a number of RAD3-like DNA-binding helicases that are seemingly ubiquitous - members include proteins of eukaryotic, bacterial and archaeal origin. RAD3 is involved in nucleotide excision repair, and forms part of the transcription factor TFIIH in yeast [].; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 3CRV_A 3CRW_1 2VL7_A 4A15_A 2VSF_A.
Probab=80.68 E-value=1 Score=48.51 Aligned_cols=38 Identities=18% Similarity=0.422 Sum_probs=25.9
Q ss_pred CCceEEEeeHHHHHhhhc--cc--cCCCceEEEEccccccCC
Q 042857 866 YKFNVLLTTYEMILADSS--HL--RGVPWEVLVVDEGHRLKN 903 (1404)
Q Consensus 866 ~kfdVvITTYe~l~~d~~--~L--~~i~w~lVIVDEAHrlKN 903 (1404)
...+|||++|..+..... .+ -...-.+|||||||+|-+
T Consensus 118 ~~adivi~~y~yl~~~~~~~~~~~~~~~~~ivI~DEAHNL~~ 159 (174)
T PF06733_consen 118 KNADIVICNYNYLFDPSIRKSLFGIDLKDNIVIFDEAHNLED 159 (174)
T ss_dssp GG-SEEEEETHHHHSHHHHHHHCT--CCCEEEEETTGGGCGG
T ss_pred ccCCEEEeCHHHHhhHHHHhhhccccccCcEEEEecccchHH
Confidence 356899999999886532 12 123457999999999843
No 317
>PRK06921 hypothetical protein; Provisional
Probab=80.48 E-value=12 Score=43.48 Aligned_cols=28 Identities=25% Similarity=0.264 Sum_probs=24.1
Q ss_pred cCCcEEEEcCCCchHHHHHHHHHHHHHh
Q 042857 773 KSKNVILADEMGLGKTVSACAFISSLYC 800 (1404)
Q Consensus 773 ~~~~~ILADEMGLGKTiqaIa~L~~L~~ 800 (1404)
.+.+.+|..+.|+|||..+.+++..+..
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~~ 143 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELMR 143 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHhh
Confidence 3577899999999999999998887764
No 318
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=80.17 E-value=4.8 Score=44.61 Aligned_cols=133 Identities=15% Similarity=0.190 Sum_probs=68.9
Q ss_pred EEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEeCCCChHHHHHHHHHHCCCCcEEEEecc--hhHHHHHHHhhhccC
Q 042857 777 VILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLSTMPNWLAEFALWAPNLNVVEYHGC--AKARAIIRQYEWHAS 854 (1404)
Q Consensus 777 ~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP~Sll~nW~rEf~kw~P~l~Vvvy~G~--~~~R~~ir~~E~~~~ 854 (1404)
.+|....|.|||-++.-+.+++... ...+.+|+--.-..-=.++++.|+--+.+=+|.-. .+....
T Consensus 4 i~lvGptGvGKTTt~aKLAa~~~~~---~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~--------- 71 (196)
T PF00448_consen 4 IALVGPTGVGKTTTIAKLAARLKLK---GKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEI--------- 71 (196)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHT---T--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHH---------
T ss_pred EEEECCCCCchHhHHHHHHHHHhhc---cccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHH---------
Confidence 4688899999999998888877654 33455665443333334555555522332222111 111111
Q ss_pred CCCccccccCCCCceEEEeeHHHHHhhhccccCCCceEEEEccccccCCCccH---HHHHHhhcc-cccEEEEeccCCCC
Q 042857 855 DPDNLNKKTSSYKFNVLLTTYEMILADSSHLRGVPWEVLVVDEGHRLKNSGSK---LFSLLNSFS-FQHRVLLTGTPLQN 930 (1404)
Q Consensus 855 ~~~~~~~~~~~~kfdVvITTYe~l~~d~~~L~~i~w~lVIVDEAHrlKN~~Sk---~~~~L~~l~-~~~rLLLTGTPlqN 930 (1404)
+......+..-++++|+||-+-+.-+.... +...+..+. ....|.|++|--+.
T Consensus 72 -----------------------~~~~l~~~~~~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~ 128 (196)
T PF00448_consen 72 -----------------------AREALEKFRKKGYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQE 128 (196)
T ss_dssp -----------------------HHHHHHHHHHTTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGH
T ss_pred -----------------------HHHHHHHHhhcCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChH
Confidence 111112233345789999998877543322 222233332 34456788887666
Q ss_pred ChHHHHHHhhhhCC
Q 042857 931 NIGEMYNLLNFLQP 944 (1404)
Q Consensus 931 nl~EL~sLL~fL~P 944 (1404)
.+.++......+.+
T Consensus 129 ~~~~~~~~~~~~~~ 142 (196)
T PF00448_consen 129 DLEQALAFYEAFGI 142 (196)
T ss_dssp HHHHHHHHHHHSST
T ss_pred HHHHHHHHhhcccC
Confidence 55555554444433
No 319
>PF15446 zf-PHD-like: PHD/FYVE-zinc-finger like domain
Probab=80.09 E-value=1.2 Score=47.51 Aligned_cols=46 Identities=30% Similarity=0.850 Sum_probs=33.1
Q ss_pred ccccccC------CCceEEcCCCCCcccccccCCCC------CCCCCCC--ccCcccccc
Q 042857 77 ECVICDL------GGNLLCCDSCPRTYHLQCLDPPL------KRIPNGK--WQCPKCTQK 122 (1404)
Q Consensus 77 ~C~~C~~------~g~ll~Cd~C~~~~H~~Cl~Ppl------~~~P~g~--W~C~~C~~~ 122 (1404)
.|.+|.. -|.|++|-+|..+||..|++|-. +.+-.++ ..|..|+..
T Consensus 1 ~C~~C~~~g~~~~kG~Lv~CQGCs~sYHk~CLG~Rs~ReHlVTKVg~d~FVLQCr~Cig~ 60 (175)
T PF15446_consen 1 TCDTCGYEGDDRNKGPLVYCQGCSSSYHKACLGPRSQREHLVTKVGDDDFVLQCRRCIGI 60 (175)
T ss_pred CcccccCCCCCccCCCeEEcCccChHHHhhhcCCccccceeeEEEcCCceEEechhhcCh
Confidence 3777854 24599999999999999999853 3333444 368888743
No 320
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=79.77 E-value=39 Score=43.96 Aligned_cols=128 Identities=14% Similarity=0.261 Sum_probs=65.5
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEeCCC-ChHHHHHH----HHHHCCCCcEEEEecchhHHHHHHHh
Q 042857 775 KNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLS-TMPNWLAE----FALWAPNLNVVEYHGCAKARAIIRQY 849 (1404)
Q Consensus 775 ~~~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP~S-ll~nW~rE----f~kw~P~l~Vvvy~G~~~~R~~ir~~ 849 (1404)
+-.+..-.=--|||..+.+.|..+..... +..+++++|-- +...-..| +++|+|.-.+-...|. .| .+
T Consensus 255 k~tVflVPRR~GKTwivv~iI~~ll~s~~-Gi~IgytAH~~~ts~~vF~eI~~~le~~f~~~~v~~vkGe-----~I-~i 327 (738)
T PHA03368 255 RATVFLVPRRHGKTWFLVPLIALALATFR-GIKIGYTAHIRKATEPVFEEIGARLRQWFGASRVDHVKGE-----TI-SF 327 (738)
T ss_pred cceEEEecccCCchhhHHHHHHHHHHhCC-CCEEEEEcCcHHHHHHHHHHHHHHHhhhcchhheeeecCc-----EE-EE
Confidence 33455556678999877766665543322 33588888853 33333333 4567765333222331 11 11
Q ss_pred hhccCCCCccccccCCCCceEEEeeHHHHHhhhccccCCCceEEEEccccccCCCccHHHHHHhhc--ccccEEEEecc
Q 042857 850 EWHASDPDNLNKKTSSYKFNVLLTTYEMILADSSHLRGVPWEVLVVDEGHRLKNSGSKLFSLLNSF--SFQHRVLLTGT 926 (1404)
Q Consensus 850 E~~~~~~~~~~~~~~~~kfdVvITTYe~l~~d~~~L~~i~w~lVIVDEAHrlKN~~Sk~~~~L~~l--~~~~rLLLTGT 926 (1404)
++. + ..+--+...|- .....++...+++|||||||-++. ..+..++=-+ .....|.+|.|
T Consensus 328 ~f~--n---------G~kstI~FaSa----rntNsiRGqtfDLLIVDEAqFIk~--~al~~ilp~l~~~n~k~I~ISS~ 389 (738)
T PHA03368 328 SFP--D---------GSRSTIVFASS----HNTNGIRGQDFNLLFVDEANFIRP--DAVQTIMGFLNQTNCKIIFVSST 389 (738)
T ss_pred Eec--C---------CCccEEEEEec----cCCCCccCCcccEEEEechhhCCH--HHHHHHHHHHhccCccEEEEecC
Confidence 111 0 01112222211 234457778999999999999974 3333333222 23344566644
No 321
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=79.75 E-value=9.6 Score=46.50 Aligned_cols=60 Identities=12% Similarity=0.088 Sum_probs=39.5
Q ss_pred HHHHHHHHH-hhccCCcEEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEeCCCChHHHHHH
Q 042857 761 LEALNWLRK-CWHKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLSTMPNWLAE 823 (1404)
Q Consensus 761 legVnwL~~-~~~~~~~~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP~Sll~nW~rE 823 (1404)
..+++.++. -+..+.-.+|..++|.|||..++.++..+... .+++|.|.-.....+....
T Consensus 68 i~eLD~vLgGGi~~GslvLI~G~pG~GKStLllq~a~~~a~~---g~~VlYvs~EEs~~qi~~R 128 (372)
T cd01121 68 IEELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKR---GGKVLYVSGEESPEQIKLR 128 (372)
T ss_pred CHHHHHhhcCCccCCeEEEEEeCCCCCHHHHHHHHHHHHHhc---CCeEEEEECCcCHHHHHHH
Confidence 345666553 23344556899999999999998888776532 3578887765555554433
No 322
>PRK08727 hypothetical protein; Validated
Probab=79.24 E-value=13 Score=42.16 Aligned_cols=26 Identities=27% Similarity=0.202 Sum_probs=20.9
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHHh
Q 042857 775 KNVILADEMGLGKTVSACAFISSLYC 800 (1404)
Q Consensus 775 ~~~ILADEMGLGKTiqaIa~L~~L~~ 800 (1404)
...+|....|+|||-.+.++...+..
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~~~~ 67 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAAAEQ 67 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 34789999999999888887776653
No 323
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=79.22 E-value=8.5 Score=41.83 Aligned_cols=27 Identities=33% Similarity=0.576 Sum_probs=22.8
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHHhh
Q 042857 775 KNVILADEMGLGKTVSACAFISSLYCE 801 (1404)
Q Consensus 775 ~~~ILADEMGLGKTiqaIa~L~~L~~~ 801 (1404)
...||..+.|.|||..+..++..+...
T Consensus 15 ~~~L~~G~~G~gkt~~a~~~~~~l~~~ 41 (188)
T TIGR00678 15 HAYLFAGPEGVGKELLALALAKALLCE 41 (188)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHcCC
Confidence 346899999999999999998888654
No 324
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=78.20 E-value=4.1 Score=47.14 Aligned_cols=56 Identities=21% Similarity=0.127 Sum_probs=41.6
Q ss_pred CCHHHHHHHHHHHHhhccCCcEEEEcCCCchHHHHHHHHHHHHHhhcc-CCCcEEEEeCCCCh
Q 042857 756 LFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFK-AKLPCLVLVPLSTM 817 (1404)
Q Consensus 756 L~pyQlegVnwL~~~~~~~~~~ILADEMGLGKTiqaIa~L~~L~~~~~-~~gP~LIVvP~Sll 817 (1404)
|.+-|..++++. .+..++-...|.|||.+.+.-+.+++...+ ....+|+|+++...
T Consensus 1 l~~eQ~~~i~~~------~~~~lV~a~AGSGKT~~l~~ri~~ll~~~~~~~~~Il~lTft~~a 57 (315)
T PF00580_consen 1 LTDEQRRIIRST------EGPLLVNAGAGSGKTTTLLERIAYLLYEGGVPPERILVLTFTNAA 57 (315)
T ss_dssp S-HHHHHHHHS-------SSEEEEEE-TTSSHHHHHHHHHHHHHHTSSSTGGGEEEEESSHHH
T ss_pred CCHHHHHHHhCC------CCCEEEEeCCCCCchHHHHHHHHHhhccccCChHHheecccCHHH
Confidence 557788888762 567777778999999999998888877663 34468999988654
No 325
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=77.95 E-value=13 Score=41.58 Aligned_cols=28 Identities=18% Similarity=0.170 Sum_probs=22.5
Q ss_pred ccCCcEEEEcCCCchHHHHHHHHHHHHH
Q 042857 772 HKSKNVILADEMGLGKTVSACAFISSLY 799 (1404)
Q Consensus 772 ~~~~~~ILADEMGLGKTiqaIa~L~~L~ 799 (1404)
......+|..+.|.|||..+.++...+.
T Consensus 40 ~~~~~~~l~G~~G~GKT~La~ai~~~~~ 67 (227)
T PRK08903 40 VADRFFYLWGEAGSGRSHLLQALVADAS 67 (227)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 3456789999999999998887776654
No 326
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=77.59 E-value=11 Score=50.81 Aligned_cols=40 Identities=20% Similarity=0.268 Sum_probs=29.4
Q ss_pred HHHHHHHHHHhhcc--CCcEEEEcCCCchHHHHHHHHHHHHH
Q 042857 760 QLEALNWLRKCWHK--SKNVILADEMGLGKTVSACAFISSLY 799 (1404)
Q Consensus 760 QlegVnwL~~~~~~--~~~~ILADEMGLGKTiqaIa~L~~L~ 799 (1404)
|-+-+..++..+.. ..|.||..+.|.|||..+=+++..+.
T Consensus 192 r~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~~~La~~i~ 233 (852)
T TIGR03345 192 RDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVVEGLALRIA 233 (852)
T ss_pred CHHHHHHHHHHHhcCCcCceeEECCCCCCHHHHHHHHHHHHh
Confidence 44457777664443 46899999999999988877766553
No 327
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=77.32 E-value=14 Score=48.70 Aligned_cols=42 Identities=24% Similarity=0.354 Sum_probs=29.2
Q ss_pred HHHHHHHHHHhhccC--Cc-EEEEcCCCchHHHHHHHHHHHHHhh
Q 042857 760 QLEALNWLRKCWHKS--KN-VILADEMGLGKTVSACAFISSLYCE 801 (1404)
Q Consensus 760 QlegVnwL~~~~~~~--~~-~ILADEMGLGKTiqaIa~L~~L~~~ 801 (1404)
|-.++..|......+ .+ .|+..+.|.|||..|-+|+..+...
T Consensus 23 Qe~~v~~L~~aI~~~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~ 67 (725)
T PRK07133 23 QDHIVQTLKNIIKSNKISHAYLFSGPRGTGKTSVAKIFANALNCS 67 (725)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhccc
Confidence 444444455544444 23 4799999999999999998887654
No 328
>KOG2340 consensus Uncharacterized conserved protein [Function unknown]
Probab=77.16 E-value=23 Score=44.29 Aligned_cols=108 Identities=18% Similarity=0.254 Sum_probs=70.5
Q ss_pred HHHHHHHHHHcC-CeEEEEecchhHHHHHHHHHhhhcCCceEEEEeCCCCHHHHHHHHHHHhcCCCceEEEeecccc-cc
Q 042857 1076 LHSMLKVLYKEG-HRVLIFSQMTKLLDILEDYLNIEFGPKTYERVDGSVSVGDRQAAITRFNQDKSRFVFLLSTRSC-GL 1153 (1404)
Q Consensus 1076 L~kLL~kl~~~G-~KVLIFSq~~~~LDiLed~L~~~f~g~~y~rLdGs~s~~eRq~~Id~Fn~~~s~~VfLLSTrAg-G~ 1153 (1404)
+.++|+.+...+ .-+|||.+.---.-.+..|+... .+.|..|+--++..+-.++-+-|-.+... ++|.+-|+- =.
T Consensus 540 v~~ImPq~~k~t~s~~LiyIPSYfDFVRvRNy~K~e--~i~F~~i~EYssk~~vsRAR~lF~qgr~~-vlLyTER~hffr 616 (698)
T KOG2340|consen 540 VDKIMPQLIKRTESGILIYIPSYFDFVRVRNYMKKE--EISFVMINEYSSKSKVSRARELFFQGRKS-VLLYTERAHFFR 616 (698)
T ss_pred HHhhchhhcccccCceEEEecchhhHHHHHHHhhhh--hcchHHHhhhhhHhhhhHHHHHHHhcCce-EEEEehhhhhhh
Confidence 456777776654 34678776544444566777766 56676666655655555666677665544 566666653 23
Q ss_pred cccccCCCEEEEEcCCCCHhHHHHHH---HhhhccC
Q 042857 1154 GINLATADTVIIYDSDFNPHADIQAM---NRAHRIG 1186 (1404)
Q Consensus 1154 GINL~~AdtVIi~DsdWNP~~d~QAi---gRahRiG 1186 (1404)
-..+.+...||+|.||-||+-|.--+ +|..-.|
T Consensus 617 R~~ikGVk~vVfYqpP~~P~FYsEiinm~~k~~~~g 652 (698)
T KOG2340|consen 617 RYHIKGVKNVVFYQPPNNPHFYSEIINMSDKTTSQG 652 (698)
T ss_pred hheecceeeEEEecCCCCcHHHHHHHhhhhhhhccC
Confidence 45677889999999999999876544 3444444
No 329
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=76.89 E-value=14 Score=48.62 Aligned_cols=123 Identities=20% Similarity=0.148 Sum_probs=67.2
Q ss_pred HHHHHHHHHHHHc--CCeEEEEecchhHHHHHHHHHhhh--cCCceEEEEeCCCCHHHHHHHHHHHhcCC-CceEEEeec
Q 042857 1074 TLLHSMLKVLYKE--GHRVLIFSQMTKLLDILEDYLNIE--FGPKTYERVDGSVSVGDRQAAITRFNQDK-SRFVFLLST 1148 (1404)
Q Consensus 1074 ~~L~kLL~kl~~~--G~KVLIFSq~~~~LDiLed~L~~~--f~g~~y~rLdGs~s~~eRq~~Id~Fn~~~-s~~VfLLST 1148 (1404)
.++..++..+... ..-|++|-.--..+-.|-.+|... |+...---+-|..++.-+++--+-|+... ..+-++++|
T Consensus 628 ~l~Eal~~~i~s~~i~gailvflpgwa~i~~L~~~ll~~~~fg~~~~y~ilp~Hsq~~~~eqrkvf~~~p~gv~kii~st 707 (1282)
T KOG0921|consen 628 GLIEALLNDIASRNIDGAVLVFLPGWAEIMTLCNRLLEHQEFGQANKYEILPLHSQLTSQEQRKVFEPVPEGVTKIILST 707 (1282)
T ss_pred HHHHHHHhhhcccCCccceeeecCchHHhhhhhhhhhhhhhhccchhcccccchhhcccHhhhhccCccccccccccccc
Confidence 3444444444433 245788877666666666665432 22211112233333334444445566544 455677777
Q ss_pred ccccccccccCCCEE-----------------EEEcCCC-CHhHHHHHHHhhhccCCCCcEEEEEEeeC
Q 042857 1149 RSCGLGINLATADTV-----------------IIYDSDF-NPHADIQAMNRAHRIGQSKRLLVYRLVVR 1199 (1404)
Q Consensus 1149 rAgG~GINL~~AdtV-----------------Ii~DsdW-NP~~d~QAigRahRiGQ~k~V~VYrLvt~ 1199 (1404)
.....-|.+-..-.| ++|-..| ++.+.+||.||++|. ++-..+++.++
T Consensus 708 niaetsiTidd~v~vid~cka~~~~~~s~nn~~~~Atvw~sktn~eqr~gr~grv---R~G~~f~lcs~ 773 (1282)
T KOG0921|consen 708 NIAETSITIDDVVYVIDSCKAKEKLFTSHNNMTHYATVWASKTNLEQRKGRAGRV---RPGFCFHLCSR 773 (1282)
T ss_pred ceeeEeeeecceeEEEeeeeeeeeeeccccceeeeeeecccccchHhhcccCcee---cccccccccHH
Confidence 766666655443222 3343434 677899999999885 44566666554
No 330
>PRK13342 recombination factor protein RarA; Reviewed
Probab=75.87 E-value=15 Score=45.33 Aligned_cols=23 Identities=30% Similarity=0.303 Sum_probs=18.7
Q ss_pred CcEEEEcCCCchHHHHHHHHHHH
Q 042857 775 KNVILADEMGLGKTVSACAFISS 797 (1404)
Q Consensus 775 ~~~ILADEMGLGKTiqaIa~L~~ 797 (1404)
.+.||..+.|+|||..+-++...
T Consensus 37 ~~ilL~GppGtGKTtLA~~ia~~ 59 (413)
T PRK13342 37 SSMILWGPPGTGKTTLARIIAGA 59 (413)
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999887766543
No 331
>KOG1911 consensus Heterochromatin-associated protein HP1 and related CHROMO domain proteins [Chromatin structure and dynamics]
Probab=75.73 E-value=2.3 Score=49.53 Aligned_cols=38 Identities=26% Similarity=0.555 Sum_probs=29.9
Q ss_pred EEEEEEecCccccccccCCHHHHHHHHHHHHHHHHHhhC
Q 042857 612 YEFLVKWVGKSNIHNSWIPESQLKVLAKRKLENYKAKYG 650 (1404)
Q Consensus 612 ~eylVKw~~~Sy~h~~Wv~e~~l~~~~~~~l~~~~~k~~ 650 (1404)
.+|||||+|+.--.++|.|+..+... +..+..|..++.
T Consensus 64 ~eYlvkW~Gy~~~~ntWEPee~~~~C-~~li~~~~~~~~ 101 (270)
T KOG1911|consen 64 IEYLVKWKGYPDPDNTWEPEEHNLDC-PELIDEFEKSQK 101 (270)
T ss_pred ceeeeecCCCCCccccCCchhhcccc-HHHHHHHHHHhc
Confidence 78999999999999999999644333 666777776654
No 332
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=75.72 E-value=16 Score=45.73 Aligned_cols=26 Identities=23% Similarity=0.235 Sum_probs=21.6
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHHh
Q 042857 775 KNVILADEMGLGKTVSACAFISSLYC 800 (1404)
Q Consensus 775 ~~~ILADEMGLGKTiqaIa~L~~L~~ 800 (1404)
...+|....|+|||..+-++...+..
T Consensus 149 ~~l~l~G~~G~GKThL~~ai~~~~~~ 174 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLHAIGNYILE 174 (450)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 45789999999999998888777654
No 333
>PRK10865 protein disaggregation chaperone; Provisional
Probab=75.70 E-value=11 Score=50.90 Aligned_cols=37 Identities=19% Similarity=0.275 Sum_probs=28.1
Q ss_pred HHHHHHHhhc--cCCcEEEEcCCCchHHHHHHHHHHHHH
Q 042857 763 ALNWLRKCWH--KSKNVILADEMGLGKTVSACAFISSLY 799 (1404)
Q Consensus 763 gVnwL~~~~~--~~~~~ILADEMGLGKTiqaIa~L~~L~ 799 (1404)
-+..++..+. ...+.||..+.|.|||..+-++...+.
T Consensus 186 ei~~~i~iL~r~~~~n~lL~G~pGvGKT~l~~~la~~i~ 224 (857)
T PRK10865 186 EIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRII 224 (857)
T ss_pred HHHHHHHHHhcCCcCceEEECCCCCCHHHHHHHHHHHhh
Confidence 4666666443 346899999999999999888777654
No 334
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=75.69 E-value=30 Score=42.33 Aligned_cols=43 Identities=21% Similarity=0.251 Sum_probs=28.9
Q ss_pred ccCCcEEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEeCCC
Q 042857 772 HKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLS 815 (1404)
Q Consensus 772 ~~~~~~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP~S 815 (1404)
.++...+|....|.|||.++..++..+....+. .++.+|+...
T Consensus 135 ~~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~-~~V~lit~D~ 177 (374)
T PRK14722 135 ERGGVFALMGPTGVGKTTTTAKLAARCVMRFGA-SKVALLTTDS 177 (374)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCC-CeEEEEeccc
Confidence 346677899999999999998888766433221 2455555433
No 335
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=75.55 E-value=15 Score=46.03 Aligned_cols=26 Identities=23% Similarity=0.212 Sum_probs=20.5
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHHh
Q 042857 775 KNVILADEMGLGKTVSACAFISSLYC 800 (1404)
Q Consensus 775 ~~~ILADEMGLGKTiqaIa~L~~L~~ 800 (1404)
...+|..+.|+|||..+-++..++..
T Consensus 142 npl~i~G~~G~GKTHLl~Ai~~~l~~ 167 (450)
T PRK14087 142 NPLFIYGESGMGKTHLLKAAKNYIES 167 (450)
T ss_pred CceEEECCCCCcHHHHHHHHHHHHHH
Confidence 45789999999999888777666543
No 336
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=74.97 E-value=24 Score=36.17 Aligned_cols=37 Identities=14% Similarity=0.072 Sum_probs=26.8
Q ss_pred EEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEeCCCC
Q 042857 777 VILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLST 816 (1404)
Q Consensus 777 ~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP~Sl 816 (1404)
.+|....|.|||..+..++..+.. ..++++++.....
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~---~~~~v~~~~~e~~ 38 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIAT---KGGKVVYVDIEEE 38 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHh---cCCEEEEEECCcc
Confidence 467788999999999888877653 3456666665443
No 337
>KOG1131 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 5'-3' helicase subunit RAD3 [Transcription; Replication, recombination and repair]
Probab=74.60 E-value=8 Score=47.99 Aligned_cols=62 Identities=21% Similarity=0.315 Sum_probs=51.5
Q ss_pred CCCCHHHHHHHHHHHHhhccCCcEEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEeCCC
Q 042857 754 GALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLS 815 (1404)
Q Consensus 754 ~~L~pyQlegVnwL~~~~~~~~~~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP~S 815 (1404)
...+|-|.+-..-+...+..+++++|-...|.|||+.-++++......++....-||-|.-.
T Consensus 15 ~~iYPEQ~~YM~elKrsLDakGh~llEMPSGTGKTvsLLSli~aYq~~~p~~~~KliYCSRT 76 (755)
T KOG1131|consen 15 DYIYPEQYEYMRELKRSLDAKGHCLLEMPSGTGKTVSLLSLIIAYQLHYPDEHRKLIYCSRT 76 (755)
T ss_pred cccCHHHHHHHHHHHHhhccCCcEEEECCCCCCcchHHHHHHHHHHHhCCcccceEEEecCc
Confidence 46899999988888888999999999999999999999998887766666554568888643
No 338
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=74.30 E-value=19 Score=42.90 Aligned_cols=42 Identities=24% Similarity=0.390 Sum_probs=29.0
Q ss_pred HHHHHHHHHHhhccCC---cEEEEcCCCchHHHHHHHHHHHHHhh
Q 042857 760 QLEALNWLRKCWHKSK---NVILADEMGLGKTVSACAFISSLYCE 801 (1404)
Q Consensus 760 QlegVnwL~~~~~~~~---~~ILADEMGLGKTiqaIa~L~~L~~~ 801 (1404)
|...++.|......+. ..||..+.|.|||..+.+++..+...
T Consensus 19 ~~~~~~~l~~~~~~~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~ 63 (355)
T TIGR02397 19 QEHIVQTLKNAIKNGRIAHAYLFSGPRGTGKTSIARIFAKALNCQ 63 (355)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 4444555544444442 35889999999999998888887643
No 339
>PRK09183 transposase/IS protein; Provisional
Probab=74.19 E-value=10 Score=43.80 Aligned_cols=28 Identities=29% Similarity=0.358 Sum_probs=23.1
Q ss_pred ccCCcEEEEcCCCchHHHHHHHHHHHHH
Q 042857 772 HKSKNVILADEMGLGKTVSACAFISSLY 799 (1404)
Q Consensus 772 ~~~~~~ILADEMGLGKTiqaIa~L~~L~ 799 (1404)
..+.+.+|..+.|.|||..+.++...+.
T Consensus 100 ~~~~~v~l~Gp~GtGKThLa~al~~~a~ 127 (259)
T PRK09183 100 ERNENIVLLGPSGVGKTHLAIALGYEAV 127 (259)
T ss_pred hcCCeEEEEeCCCCCHHHHHHHHHHHHH
Confidence 4578899999999999999888865544
No 340
>PRK06893 DNA replication initiation factor; Validated
Probab=73.56 E-value=19 Score=40.72 Aligned_cols=25 Identities=12% Similarity=-0.067 Sum_probs=20.3
Q ss_pred cEEEEcCCCchHHHHHHHHHHHHHh
Q 042857 776 NVILADEMGLGKTVSACAFISSLYC 800 (1404)
Q Consensus 776 ~~ILADEMGLGKTiqaIa~L~~L~~ 800 (1404)
..+|....|+|||-.+.++...+..
T Consensus 41 ~l~l~G~~G~GKThL~~ai~~~~~~ 65 (229)
T PRK06893 41 FFYIWGGKSSGKSHLLKAVSNHYLL 65 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3589999999999888887776654
No 341
>PRK11823 DNA repair protein RadA; Provisional
Probab=73.36 E-value=16 Score=45.63 Aligned_cols=63 Identities=13% Similarity=0.080 Sum_probs=42.4
Q ss_pred HHHHHHHHH-hhccCCcEEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEeCCCChHHHHHHHHH
Q 042857 761 LEALNWLRK-CWHKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLSTMPNWLAEFAL 826 (1404)
Q Consensus 761 legVnwL~~-~~~~~~~~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP~Sll~nW~rEf~k 826 (1404)
..+++.++. -+..+.-.+|..++|.|||..++.++..+.. ...++|.|.-.....++.....+
T Consensus 66 i~~LD~~LgGGi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~---~g~~vlYvs~Ees~~qi~~ra~r 129 (446)
T PRK11823 66 IGELDRVLGGGLVPGSVVLIGGDPGIGKSTLLLQVAARLAA---AGGKVLYVSGEESASQIKLRAER 129 (446)
T ss_pred cHHHHHHhcCCccCCEEEEEECCCCCCHHHHHHHHHHHHHh---cCCeEEEEEccccHHHHHHHHHH
Confidence 345666654 3344555689999999999999988877652 23478888876666665444443
No 342
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=73.26 E-value=5.1 Score=40.06 Aligned_cols=35 Identities=26% Similarity=0.326 Sum_probs=24.9
Q ss_pred EEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEeCCCCh
Q 042857 777 VILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLSTM 817 (1404)
Q Consensus 777 ~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP~Sll 817 (1404)
.+|..+.|.|||..+-.++..+ ..|++.+....+.
T Consensus 1 ill~G~~G~GKT~l~~~la~~l------~~~~~~i~~~~~~ 35 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL------GFPFIEIDGSELI 35 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT------TSEEEEEETTHHH
T ss_pred CEEECcCCCCeeHHHHHHHhhc------ccccccccccccc
Confidence 3678899999999887777665 2356666655544
No 343
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=73.19 E-value=22 Score=43.87 Aligned_cols=41 Identities=20% Similarity=0.408 Sum_probs=28.7
Q ss_pred CceEEEEccccccCCCc---cHHHHHHhhcc-cccEEEEec--cCCC
Q 042857 889 PWEVLVVDEGHRLKNSG---SKLFSLLNSFS-FQHRVLLTG--TPLQ 929 (1404)
Q Consensus 889 ~w~lVIVDEAHrlKN~~---Sk~~~~L~~l~-~~~rLLLTG--TPlq 929 (1404)
..++++||..|.+.+.. --++..+..+. ....|+||+ +|-+
T Consensus 175 ~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~ 221 (408)
T COG0593 175 SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKE 221 (408)
T ss_pred ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchh
Confidence 46799999999998763 34566666664 334899998 6644
No 344
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=73.16 E-value=21 Score=42.75 Aligned_cols=47 Identities=28% Similarity=0.522 Sum_probs=36.6
Q ss_pred CCHHHHHHHHHHHHhhccCCc-EEEEcCCCchHHHHHHHHHHHHHhhc
Q 042857 756 LFPHQLEALNWLRKCWHKSKN-VILADEMGLGKTVSACAFISSLYCEF 802 (1404)
Q Consensus 756 L~pyQlegVnwL~~~~~~~~~-~ILADEMGLGKTiqaIa~L~~L~~~~ 802 (1404)
++|+|......|...+.+-.+ .|+....|+|||..+..|...+....
T Consensus 2 ~yPW~~~~w~~l~~~~~r~~hA~Lf~G~~G~GK~~la~~~a~~llC~~ 49 (325)
T PRK08699 2 IYPWHQEQWRQIAEHWERRPNAWLFAGKKGIGKTAFARFAAQALLCET 49 (325)
T ss_pred CCCccHHHHHHHHHhcCCcceEEEeECCCCCCHHHHHHHHHHHHcCCC
Confidence 578888887777766544444 46899999999999999998887643
No 345
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=73.08 E-value=18 Score=45.34 Aligned_cols=42 Identities=24% Similarity=0.336 Sum_probs=31.7
Q ss_pred HHHHHHHHHHhhccC---CcEEEEcCCCchHHHHHHHHHHHHHhh
Q 042857 760 QLEALNWLRKCWHKS---KNVILADEMGLGKTVSACAFISSLYCE 801 (1404)
Q Consensus 760 QlegVnwL~~~~~~~---~~~ILADEMGLGKTiqaIa~L~~L~~~ 801 (1404)
|-..+.+|...+..+ ...|+..+.|.|||..+.+++..+...
T Consensus 22 q~~~v~~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~ 66 (451)
T PRK06305 22 QDAVVAVLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKALNCQ 66 (451)
T ss_pred cHHHHHHHHHHHHcCCCceEEEEEcCCCCCHHHHHHHHHHHhcCC
Confidence 555666776666554 235789999999999999999888653
No 346
>PRK05642 DNA replication initiation factor; Validated
Probab=72.49 E-value=20 Score=40.72 Aligned_cols=37 Identities=24% Similarity=0.470 Sum_probs=25.6
Q ss_pred ceEEEEccccccCCCc---cHHHHHHhhccc-ccEEEEecc
Q 042857 890 WEVLVVDEGHRLKNSG---SKLFSLLNSFSF-QHRVLLTGT 926 (1404)
Q Consensus 890 w~lVIVDEAHrlKN~~---Sk~~~~L~~l~~-~~rLLLTGT 926 (1404)
.++||||+.|.+.+.. ..++..+..+.. ..++++|+|
T Consensus 98 ~d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~ 138 (234)
T PRK05642 98 YELVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAAS 138 (234)
T ss_pred CCEEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCC
Confidence 3689999999886532 335666665543 467888887
No 347
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=72.09 E-value=20 Score=47.25 Aligned_cols=98 Identities=12% Similarity=0.138 Sum_probs=67.2
Q ss_pred hhhHHHHHHHHHHHHHHcCCeEEEEecchhHHHHHHHHHhhhcC--CceEEEEeCCCCHHHHHHHHHHHhcCCCceEEEe
Q 042857 1069 ASAKLTLLHSMLKVLYKEGHRVLIFSQMTKLLDILEDYLNIEFG--PKTYERVDGSVSVGDRQAAITRFNQDKSRFVFLL 1146 (1404)
Q Consensus 1069 ~SgKl~~L~kLL~kl~~~G~KVLIFSq~~~~LDiLed~L~~~f~--g~~y~rLdGs~s~~eRq~~Id~Fn~~~s~~VfLL 1146 (1404)
.|||.....-.+-.....|.+++|.++......-+.+.+...+. ++.+..++|+++..+|...+.....+... +++
T Consensus 292 GSGKT~va~~~il~~~~~g~q~lilaPT~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~--IvV 369 (681)
T PRK10917 292 GSGKTVVAALAALAAIEAGYQAALMAPTEILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEAD--IVI 369 (681)
T ss_pred CCcHHHHHHHHHHHHHHcCCeEEEEeccHHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCC--EEE
Confidence 47888765554444556799999999998776655555543322 57889999999999999999988765444 455
Q ss_pred eccc-ccccccccCCCEEEEEcC
Q 042857 1147 STRS-CGLGINLATADTVIIYDS 1168 (1404)
Q Consensus 1147 STrA-gG~GINL~~AdtVIi~Ds 1168 (1404)
.|.+ ....+.+.....||+=+.
T Consensus 370 gT~~ll~~~v~~~~l~lvVIDE~ 392 (681)
T PRK10917 370 GTHALIQDDVEFHNLGLVIIDEQ 392 (681)
T ss_pred chHHHhcccchhcccceEEEech
Confidence 5543 344566666666665433
No 348
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=72.04 E-value=25 Score=43.95 Aligned_cols=26 Identities=19% Similarity=0.185 Sum_probs=21.5
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHHh
Q 042857 775 KNVILADEMGLGKTVSACAFISSLYC 800 (1404)
Q Consensus 775 ~~~ILADEMGLGKTiqaIa~L~~L~~ 800 (1404)
...+|..+.|+|||..+-++...+..
T Consensus 131 n~l~lyG~~G~GKTHLl~ai~~~l~~ 156 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLLQSIGNYVVQ 156 (440)
T ss_pred CeEEEEcCCCCcHHHHHHHHHHHHHH
Confidence 35789999999999988887777654
No 349
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=71.95 E-value=24 Score=42.84 Aligned_cols=45 Identities=22% Similarity=0.192 Sum_probs=30.8
Q ss_pred CHHHHHHHHHHHHhhc---cCCcEEEEcCCCchHHHHHHHHHHHHHhh
Q 042857 757 FPHQLEALNWLRKCWH---KSKNVILADEMGLGKTVSACAFISSLYCE 801 (1404)
Q Consensus 757 ~pyQlegVnwL~~~~~---~~~~~ILADEMGLGKTiqaIa~L~~L~~~ 801 (1404)
|.-|++-+.-.+..+. ...+.+|....|+|||..+-.++..+...
T Consensus 35 Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~ 82 (394)
T PRK00411 35 REEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEI 82 (394)
T ss_pred HHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 4555555544443332 23678999999999999998888776543
No 350
>PRK11054 helD DNA helicase IV; Provisional
Probab=71.87 E-value=7.5 Score=51.08 Aligned_cols=67 Identities=21% Similarity=0.113 Sum_probs=49.6
Q ss_pred CCCCHHHHHHHHHHHHhhccCCcEEEEcCCCchHHHHHHHHHHHHHhhccC-CCcEEEEeCCCChHHHHHH-HHH
Q 042857 754 GALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKA-KLPCLVLVPLSTMPNWLAE-FAL 826 (1404)
Q Consensus 754 ~~L~pyQlegVnwL~~~~~~~~~~ILADEMGLGKTiqaIa~L~~L~~~~~~-~gP~LIVvP~Sll~nW~rE-f~k 826 (1404)
..|.+.|.++|.. . ..+.++....|.|||.+.++-+.+++..... ...+|+++......+..++ +..
T Consensus 195 ~~L~~~Q~~av~~-----~-~~~~lV~agaGSGKT~vl~~r~ayLl~~~~~~~~~IL~ltft~~AA~em~eRL~~ 263 (684)
T PRK11054 195 SPLNPSQARAVVN-----G-EDSLLVLAGAGSGKTSVLVARAGWLLARGQAQPEQILLLAFGRQAAEEMDERIRE 263 (684)
T ss_pred CCCCHHHHHHHhC-----C-CCCeEEEEeCCCCHHHHHHHHHHHHHHhCCCCHHHeEEEeccHHHHHHHHHHHHH
Confidence 4699999999852 2 3445666679999999999999998865432 3468999998877766555 443
No 351
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=71.46 E-value=21 Score=46.68 Aligned_cols=98 Identities=13% Similarity=0.137 Sum_probs=67.4
Q ss_pred hhhHHHHHHHHHHHHHHcCCeEEEEecchhHHHHHHHHHhhhcC--CceEEEEeCCCCHHHHHHHHHHHhcCCCceEEEe
Q 042857 1069 ASAKLTLLHSMLKVLYKEGHRVLIFSQMTKLLDILEDYLNIEFG--PKTYERVDGSVSVGDRQAAITRFNQDKSRFVFLL 1146 (1404)
Q Consensus 1069 ~SgKl~~L~kLL~kl~~~G~KVLIFSq~~~~LDiLed~L~~~f~--g~~y~rLdGs~s~~eRq~~Id~Fn~~~s~~VfLL 1146 (1404)
.|||..+..-.+-.....|.+++|.++.......+.+.+...+. ++.+..++|+++..+|...+.....+... +++
T Consensus 266 GSGKT~va~l~il~~~~~g~qvlilaPT~~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~--IiV 343 (630)
T TIGR00643 266 GSGKTLVAALAMLAAIEAGYQVALMAPTEILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIH--LVV 343 (630)
T ss_pred CCcHHHHHHHHHHHHHHcCCcEEEECCHHHHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCC--EEE
Confidence 47887655443344456788999999998877766665554433 68899999999999999999888765444 445
Q ss_pred eccc-ccccccccCCCEEEEEcC
Q 042857 1147 STRS-CGLGINLATADTVIIYDS 1168 (1404)
Q Consensus 1147 STrA-gG~GINL~~AdtVIi~Ds 1168 (1404)
.|.+ .-..+.+.....||+=+.
T Consensus 344 gT~~ll~~~~~~~~l~lvVIDEa 366 (630)
T TIGR00643 344 GTHALIQEKVEFKRLALVIIDEQ 366 (630)
T ss_pred ecHHHHhccccccccceEEEech
Confidence 5543 344566666666665444
No 352
>PTZ00293 thymidine kinase; Provisional
Probab=70.54 E-value=26 Score=39.49 Aligned_cols=36 Identities=17% Similarity=0.241 Sum_probs=24.9
Q ss_pred EEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEeCCC
Q 042857 777 VILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLS 815 (1404)
Q Consensus 777 ~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP~S 815 (1404)
-++...||.|||...|-.+..+. ....+++++-|..
T Consensus 7 ~vi~GpMfSGKTteLLr~i~~y~---~ag~kv~~~kp~~ 42 (211)
T PTZ00293 7 SVIIGPMFSGKTTELMRLVKRFT---YSEKKCVVIKYSK 42 (211)
T ss_pred EEEECCCCChHHHHHHHHHHHHH---HcCCceEEEEecc
Confidence 35678999999987766555432 2345788888853
No 353
>KOG0956 consensus PHD finger protein AF10 [General function prediction only]
Probab=70.44 E-value=5.9 Score=50.23 Aligned_cols=50 Identities=24% Similarity=0.684 Sum_probs=34.4
Q ss_pred CcccccccccccCCCc--------eEEcC--CCCCcccccccCCCCC------CCCCCCccCcccc
Q 042857 71 NDGYYYECVICDLGGN--------LLCCD--SCPRTYHLQCLDPPLK------RIPNGKWQCPKCT 120 (1404)
Q Consensus 71 ~d~~~~~C~~C~~~g~--------ll~Cd--~C~~~~H~~Cl~Ppl~------~~P~g~W~C~~C~ 120 (1404)
.|.+...|.+|...|. .+.|. +|.++||.+|-.-.-. .+-+.--||-.|.
T Consensus 113 ~dRfnKtCYIC~E~GrpnkA~~GACMtCNKs~CkqaFHVTCAQ~~GLLCEE~gn~~dNVKYCGYCk 178 (900)
T KOG0956|consen 113 HDRFNKTCYICNEEGRPNKAAKGACMTCNKSGCKQAFHVTCAQRAGLLCEEEGNISDNVKYCGYCK 178 (900)
T ss_pred hhhhcceeeeecccCCccccccccceecccccchhhhhhhHhhhhccceeccccccccceechhHH
Confidence 4555567999988653 66786 7999999999864311 1112236999998
No 354
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=70.39 E-value=47 Score=39.62 Aligned_cols=42 Identities=24% Similarity=0.221 Sum_probs=27.2
Q ss_pred CHHHHHHHHHHHHhhc----cCCcEEEEcCCCchHHHHHHHHHHHH
Q 042857 757 FPHQLEALNWLRKCWH----KSKNVILADEMGLGKTVSACAFISSL 798 (1404)
Q Consensus 757 ~pyQlegVnwL~~~~~----~~~~~ILADEMGLGKTiqaIa~L~~L 798 (1404)
++..++.+.-++..+. ...+.+|..+.|+|||..+.++...+
T Consensus 30 ~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l 75 (328)
T PRK00080 30 QEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEM 75 (328)
T ss_pred cHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHh
Confidence 3444544543443321 23578999999999999888776554
No 355
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=69.88 E-value=13 Score=45.59 Aligned_cols=26 Identities=23% Similarity=0.263 Sum_probs=21.4
Q ss_pred cEEEEcCCCchHHHHHHHHHHHHHhh
Q 042857 776 NVILADEMGLGKTVSACAFISSLYCE 801 (1404)
Q Consensus 776 ~~ILADEMGLGKTiqaIa~L~~L~~~ 801 (1404)
..+|....|+|||..+-++...+...
T Consensus 138 ~l~l~G~~G~GKThL~~ai~~~l~~~ 163 (405)
T TIGR00362 138 PLFIYGGVGLGKTHLLHAIGNEILEN 163 (405)
T ss_pred eEEEECCCCCcHHHHHHHHHHHHHHh
Confidence 46899999999999988887777543
No 356
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=69.70 E-value=20 Score=47.55 Aligned_cols=34 Identities=26% Similarity=0.265 Sum_probs=25.3
Q ss_pred HHHHhhc--cCCcEEEEcCCCchHHHHHHHHHHHHH
Q 042857 766 WLRKCWH--KSKNVILADEMGLGKTVSACAFISSLY 799 (1404)
Q Consensus 766 wL~~~~~--~~~~~ILADEMGLGKTiqaIa~L~~L~ 799 (1404)
.++..+. ...|.||..+.|.|||..+-++...+.
T Consensus 193 ~~~~~L~~~~~~n~lL~G~pG~GKT~l~~~la~~~~ 228 (731)
T TIGR02639 193 RTIQVLCRRKKNNPLLVGEPGVGKTAIAEGLALRIA 228 (731)
T ss_pred HHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHH
Confidence 4444333 356899999999999999887777664
No 357
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=69.63 E-value=22 Score=45.95 Aligned_cols=37 Identities=22% Similarity=0.470 Sum_probs=25.5
Q ss_pred ceEEEEccccccCCCcc---HHHHHHhhccc-ccEEEEecc
Q 042857 890 WEVLVVDEGHRLKNSGS---KLFSLLNSFSF-QHRVLLTGT 926 (1404)
Q Consensus 890 w~lVIVDEAHrlKN~~S---k~~~~L~~l~~-~~rLLLTGT 926 (1404)
.++||||+.|.+.+... .++..+..+.. ...|++|+.
T Consensus 378 ~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd 418 (617)
T PRK14086 378 MDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSD 418 (617)
T ss_pred CCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecC
Confidence 57999999999976443 35666666543 345777765
No 358
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=69.23 E-value=33 Score=47.37 Aligned_cols=59 Identities=15% Similarity=0.035 Sum_probs=41.5
Q ss_pred CCCCCHHHHHHHHHHHHhhccCCcEEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEeCCCCh
Q 042857 753 GGALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLSTM 817 (1404)
Q Consensus 753 g~~L~pyQlegVnwL~~~~~~~~~~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP~Sll 817 (1404)
+..|.+-|.+++..+. ..++-++|..--|.|||.+.-++...+. . ....++.++|...-
T Consensus 379 ~~~Ls~eQ~~Av~~i~---~~~r~~~v~G~AGTGKTt~l~~~~~~~e-~--~G~~V~g~ApTgkA 437 (1102)
T PRK13826 379 HARLSDEQKTAIEHVA---GPARIAAVVGRAGAGKTTMMKAAREAWE-A--AGYRVVGGALAGKA 437 (1102)
T ss_pred CCCCCHHHHHHHHHHh---ccCCeEEEEeCCCCCHHHHHHHHHHHHH-H--cCCeEEEEcCcHHH
Confidence 3579999999998764 2355678899999999987766554432 2 23467778886544
No 359
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=69.15 E-value=55 Score=41.83 Aligned_cols=39 Identities=13% Similarity=0.218 Sum_probs=25.5
Q ss_pred cCCcEEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEe
Q 042857 773 KSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLV 812 (1404)
Q Consensus 773 ~~~~~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVv 812 (1404)
.+...+|....|.|||..+..++..+...+. ...+.+|.
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~~~-gkkVaLId 387 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQHA-PRDVALVT 387 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhcC-CCceEEEe
Confidence 3556678889999999988777766543322 23454443
No 360
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=68.84 E-value=19 Score=44.00 Aligned_cols=22 Identities=32% Similarity=0.301 Sum_probs=17.7
Q ss_pred CcEEEEcCCCchHHHHHHHHHH
Q 042857 775 KNVILADEMGLGKTVSACAFIS 796 (1404)
Q Consensus 775 ~~~ILADEMGLGKTiqaIa~L~ 796 (1404)
.+.||....|.|||-.+-.+..
T Consensus 49 ~SmIl~GPPG~GKTTlA~liA~ 70 (436)
T COG2256 49 HSMILWGPPGTGKTTLARLIAG 70 (436)
T ss_pred ceeEEECCCCCCHHHHHHHHHH
Confidence 5789999999999977655444
No 361
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=68.40 E-value=1.8 Score=41.49 Aligned_cols=43 Identities=33% Similarity=0.768 Sum_probs=30.8
Q ss_pred cccccCCCc---eEEcCCCCCcccccccCCCCCCCCCCCccCcccccc
Q 042857 78 CVICDLGGN---LLCCDSCPRTYHLQCLDPPLKRIPNGKWQCPKCTQK 122 (1404)
Q Consensus 78 C~~C~~~g~---ll~Cd~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~ 122 (1404)
|..|.-+|+ ++.+ .|.-.||+.|+...|.+- ...=.||-|++.
T Consensus 35 Cp~Ck~Pgd~Cplv~g-~C~H~FH~hCI~kWl~~~-~~~~~CPmCR~~ 80 (85)
T PF12861_consen 35 CPDCKFPGDDCPLVWG-KCSHNFHMHCILKWLSTQ-SSKGQCPMCRQP 80 (85)
T ss_pred CCCccCCCCCCceeec-cCccHHHHHHHHHHHccc-cCCCCCCCcCCe
Confidence 555666665 5544 499999999999877653 234489999865
No 362
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=68.24 E-value=32 Score=46.18 Aligned_cols=44 Identities=16% Similarity=0.204 Sum_probs=31.0
Q ss_pred CHHHHHHHHHHHHhhcc--C-CcE-EEEcCCCchHHHHHHHHHHHHHh
Q 042857 757 FPHQLEALNWLRKCWHK--S-KNV-ILADEMGLGKTVSACAFISSLYC 800 (1404)
Q Consensus 757 ~pyQlegVnwL~~~~~~--~-~~~-ILADEMGLGKTiqaIa~L~~L~~ 800 (1404)
|+-|.+.|..++...-. + .++ +|...+|+|||.++-.++..|..
T Consensus 760 REeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqe 807 (1164)
T PTZ00112 760 REKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQH 807 (1164)
T ss_pred hHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHH
Confidence 67777777655443322 2 234 48999999999999988877643
No 363
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=67.38 E-value=40 Score=38.51 Aligned_cols=22 Identities=27% Similarity=0.371 Sum_probs=16.7
Q ss_pred CcEEEEcCCCchHHHHHHHHHH
Q 042857 775 KNVILADEMGLGKTVSACAFIS 796 (1404)
Q Consensus 775 ~~~ILADEMGLGKTiqaIa~L~ 796 (1404)
.+.||....|+|||-.|-.+..
T Consensus 51 ~h~lf~GPPG~GKTTLA~IIA~ 72 (233)
T PF05496_consen 51 DHMLFYGPPGLGKTTLARIIAN 72 (233)
T ss_dssp -EEEEESSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCccchhHHHHHHHh
Confidence 4689999999999976654443
No 364
>PF00265 TK: Thymidine kinase; InterPro: IPR001267 Thymidine kinase (TK) (2.7.1.21 from EC) is an ubiquitous enzyme that catalyzes the ATP-dependent phosphorylation of thymidine. Two different families of Thymidine kinase have been identified [, ] and are represented in this entry; one groups together Thymidine kinase from herpesviruses, as well as cytosolic thymidylate kinases and the second family groups Thymidine kinase from various sources that include, vertebrates, bacteria, the Bacteriophage T4, poxviruses, African swine fever virus (ASFV) and Fish lymphocystis disease virus (FLDV). The major capsid protein of insect iridescent viruses also belongs to this family.; GO: 0004797 thymidine kinase activity, 0005524 ATP binding; PDB: 1XX6_B 2J9R_A 2J87_B 3E2I_A 2JA1_A 2UZ3_B 2B8T_B 2WVJ_A 1W4R_F 1XBT_F ....
Probab=67.37 E-value=29 Score=37.96 Aligned_cols=34 Identities=24% Similarity=0.187 Sum_probs=23.7
Q ss_pred EEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEeCC
Q 042857 778 ILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPL 814 (1404)
Q Consensus 778 ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP~ 814 (1404)
++...|+.|||...|..+..+.. ...++|++-|.
T Consensus 5 ~i~GpM~sGKS~eLi~~~~~~~~---~~~~v~~~kp~ 38 (176)
T PF00265_consen 5 FITGPMFSGKSTELIRRIHRYEI---AGKKVLVFKPA 38 (176)
T ss_dssp EEEESTTSSHHHHHHHHHHHHHH---TT-EEEEEEES
T ss_pred EEECCcCChhHHHHHHHHHHHHh---CCCeEEEEEec
Confidence 45679999999988877765532 33467887774
No 365
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=67.07 E-value=14 Score=49.88 Aligned_cols=40 Identities=20% Similarity=0.270 Sum_probs=29.6
Q ss_pred HHHHHHHHHHhhcc--CCcEEEEcCCCchHHHHHHHHHHHHH
Q 042857 760 QLEALNWLRKCWHK--SKNVILADEMGLGKTVSACAFISSLY 799 (1404)
Q Consensus 760 QlegVnwL~~~~~~--~~~~ILADEMGLGKTiqaIa~L~~L~ 799 (1404)
|-.-+..++..+.. ..+.||..+.|.|||..+-+++..+.
T Consensus 178 r~~ei~~~~~~l~r~~~~n~lL~G~pGvGKT~l~~~la~~i~ 219 (852)
T TIGR03346 178 RDEEIRRTIQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQRIV 219 (852)
T ss_pred cHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHh
Confidence 33457777765543 46889999999999999888776654
No 366
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=66.97 E-value=53 Score=38.46 Aligned_cols=37 Identities=16% Similarity=0.195 Sum_probs=24.6
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEeC
Q 042857 774 SKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVP 813 (1404)
Q Consensus 774 ~~~~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP 813 (1404)
+....|....|.|||..+..+...+.. ...++.+|.-
T Consensus 75 ~~~i~~~G~~g~GKTtl~~~l~~~l~~---~~~~v~~i~~ 111 (270)
T PRK06731 75 VQTIALIGPTGVGKTTTLAKMAWQFHG---KKKTVGFITT 111 (270)
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHHH---cCCeEEEEec
Confidence 456778889999999887776665532 1234555554
No 367
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=66.84 E-value=81 Score=35.13 Aligned_cols=138 Identities=16% Similarity=0.190 Sum_probs=69.9
Q ss_pred cCCcEEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEeCCCChHHH-HHHHH--HHCCCCcEEEEecchhHHHHHHHh
Q 042857 773 KSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLSTMPNW-LAEFA--LWAPNLNVVEYHGCAKARAIIRQY 849 (1404)
Q Consensus 773 ~~~~~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP~Sll~nW-~rEf~--kw~P~l~Vvvy~G~~~~R~~ir~~ 849 (1404)
..+..++....|-|||-.+++....... ...+++||==.-- .| ..|.. .-.|++.+..+ |.. +
T Consensus 21 ~~g~v~v~~g~GkGKtt~a~g~a~ra~g---~G~~V~ivQFlKg--~~~~GE~~~l~~l~~v~~~~~-g~~--------~ 86 (191)
T PRK05986 21 EKGLLIVHTGNGKGKSTAAFGMALRAVG---HGKKVGVVQFIKG--AWSTGERNLLEFGGGVEFHVM-GTG--------F 86 (191)
T ss_pred cCCeEEEECCCCCChHHHHHHHHHHHHH---CCCeEEEEEEecC--CCccCHHHHHhcCCCcEEEEC-CCC--------C
Confidence 4577889999999999999988876653 3346666642211 11 12222 21232222211 100 0
Q ss_pred hhccCCCCccccccCCCCceEEEeeHHHHHhhhccccCCCceEEEEccccccCCC----ccHHHHHHhhcccccEEEEec
Q 042857 850 EWHASDPDNLNKKTSSYKFNVLLTTYEMILADSSHLRGVPWEVLVVDEGHRLKNS----GSKLFSLLNSFSFQHRVLLTG 925 (1404)
Q Consensus 850 E~~~~~~~~~~~~~~~~kfdVvITTYe~l~~d~~~L~~i~w~lVIVDEAHrlKN~----~Sk~~~~L~~l~~~~rLLLTG 925 (1404)
.|...+ ..-++ ..-.+.+..-...+..-.|++||+||.=..-+. ...+...|..-...--|+|||
T Consensus 87 ~~~~~~----------~~e~~-~~~~~~~~~a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTG 155 (191)
T PRK05986 87 TWETQD----------RERDI-AAAREGWEEAKRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITG 155 (191)
T ss_pred cccCCC----------cHHHH-HHHHHHHHHHHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEEC
Confidence 000000 00000 000011222234566778999999998665442 234555555545556799999
Q ss_pred cCCCCChHHH
Q 042857 926 TPLQNNIGEM 935 (1404)
Q Consensus 926 TPlqNnl~EL 935 (1404)
--....+.|+
T Consensus 156 R~~p~~Lie~ 165 (191)
T PRK05986 156 RGAPRELIEA 165 (191)
T ss_pred CCCCHHHHHh
Confidence 7443333333
No 368
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=66.46 E-value=32 Score=41.09 Aligned_cols=43 Identities=23% Similarity=0.352 Sum_probs=34.1
Q ss_pred HHHHHHHHHHhhccC---CcEEEEcCCCchHHHHHHHHHHHHHhhc
Q 042857 760 QLEALNWLRKCWHKS---KNVILADEMGLGKTVSACAFISSLYCEF 802 (1404)
Q Consensus 760 QlegVnwL~~~~~~~---~~~ILADEMGLGKTiqaIa~L~~L~~~~ 802 (1404)
|-+++..|...+..+ ..-++..+.|.||+..+.+|+..+....
T Consensus 9 q~~~~~~L~~~i~~~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~ 54 (314)
T PRK07399 9 QPLAIELLTAAIKQNRIAPAYLFAGPEGVGRKLAALCFIEGLLSQG 54 (314)
T ss_pred HHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHHcCCC
Confidence 566677777766666 3568999999999999999999987653
No 369
>CHL00095 clpC Clp protease ATP binding subunit
Probab=66.35 E-value=20 Score=48.23 Aligned_cols=27 Identities=33% Similarity=0.412 Sum_probs=22.1
Q ss_pred cCCcEEEEcCCCchHHHHHHHHHHHHH
Q 042857 773 KSKNVILADEMGLGKTVSACAFISSLY 799 (1404)
Q Consensus 773 ~~~~~ILADEMGLGKTiqaIa~L~~L~ 799 (1404)
...|.||..+.|.|||..+-++...+.
T Consensus 199 ~~~n~lL~G~pGvGKTal~~~la~~i~ 225 (821)
T CHL00095 199 TKNNPILIGEPGVGKTAIAEGLAQRIV 225 (821)
T ss_pred ccCCeEEECCCCCCHHHHHHHHHHHHH
Confidence 346889999999999999877776654
No 370
>KOG1473 consensus Nucleosome remodeling factor, subunit NURF301/BPTF [Chromatin structure and dynamics; Transcription]
Probab=66.33 E-value=1.1 Score=58.98 Aligned_cols=51 Identities=29% Similarity=0.491 Sum_probs=42.7
Q ss_pred ccccccCCCceEEcCC-CCCcccc-cccCC--CCCCCCCCCccCccccccccccC
Q 042857 77 ECVICDLGGNLLCCDS-CPRTYHL-QCLDP--PLKRIPNGKWQCPKCTQKNDQLK 127 (1404)
Q Consensus 77 ~C~~C~~~g~ll~Cd~-C~~~~H~-~Cl~P--pl~~~P~g~W~C~~C~~~~~~~~ 127 (1404)
.|.+|...+-+++|+. |+..||+ .|++- --..++.|-|+|+.|..++..+.
T Consensus 430 rl~Ie~~det~l~yysT~pqly~ll~cLd~~~~e~~L~d~i~~~~ee~~rqM~lT 484 (1414)
T KOG1473|consen 430 RLRIEGMDETLLWYYSTCPQLYHLLRCLDRTYVEMYLCDGIWERREEIIRQMGLT 484 (1414)
T ss_pred eeEEecCCCcEEEEecCcHHHHHHHHHhchHHHHHhhccchhhhHHHHHHhccch
Confidence 5999999999999997 9999999 99993 33568889999999998755433
No 371
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=65.86 E-value=15 Score=42.54 Aligned_cols=63 Identities=24% Similarity=0.306 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHhhccCCcEEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEeCCCChHHHHHH
Q 042857 758 PHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLSTMPNWLAE 823 (1404)
Q Consensus 758 pyQlegVnwL~~~~~~~~~~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP~Sll~nW~rE 823 (1404)
-.++..+.-+...+.++.|.+|....|.|||..++|+...+. .. +.+++++.-+.++.++...
T Consensus 89 ~~~l~~~~~~~~~~~~~~nl~l~G~~G~GKThLa~Ai~~~l~-~~--g~sv~f~~~~el~~~Lk~~ 151 (254)
T COG1484 89 KKALEDLASLVEFFERGENLVLLGPPGVGKTHLAIAIGNELL-KA--GISVLFITAPDLLSKLKAA 151 (254)
T ss_pred HHHHHHHHHHHHHhccCCcEEEECCCCCcHHHHHHHHHHHHH-Hc--CCeEEEEEHHHHHHHHHHH
Confidence 344555554555556789999999999999999999998887 32 3457777655555555444
No 372
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=65.75 E-value=20 Score=39.84 Aligned_cols=34 Identities=21% Similarity=0.316 Sum_probs=24.8
Q ss_pred ceEEEEccccccCCCccHHHHHHhhccc--ccEEEEecc
Q 042857 890 WEVLVVDEGHRLKNSGSKLFSLLNSFSF--QHRVLLTGT 926 (1404)
Q Consensus 890 w~lVIVDEAHrlKN~~Sk~~~~L~~l~~--~~rLLLTGT 926 (1404)
.++|+|||||-+. ..+...|..+.. ..++++.|.
T Consensus 83 ~~~v~IDEaQF~~---~~~v~~l~~lad~lgi~Vi~~GL 118 (201)
T COG1435 83 VDCVLIDEAQFFD---EELVYVLNELADRLGIPVICYGL 118 (201)
T ss_pred cCEEEEehhHhCC---HHHHHHHHHHHhhcCCEEEEecc
Confidence 6899999999984 466667777764 456666664
No 373
>KOG1512 consensus PHD Zn-finger protein [General function prediction only]
Probab=65.48 E-value=3.1 Score=47.44 Aligned_cols=52 Identities=19% Similarity=0.270 Sum_probs=36.5
Q ss_pred ccccccCCC---------ceEEcCCCCCcccccccCCCC--CC-CCCCCccCccccccccccCC
Q 042857 77 ECVICDLGG---------NLLCCDSCPRTYHLQCLDPPL--KR-IPNGKWQCPKCTQKNDQLKP 128 (1404)
Q Consensus 77 ~C~~C~~~g---------~ll~Cd~C~~~~H~~Cl~Ppl--~~-~P~g~W~C~~C~~~~~~~~~ 128 (1404)
.|.+|-++- .+++|..|.-++|.+|+.-+. .. +-...|.|..|.--.-...|
T Consensus 260 ~~~~~~~~~~~~~~~r~~S~I~C~~C~~~~HP~Ci~M~~elv~~~KTY~W~C~~C~lC~IC~~P 323 (381)
T KOG1512|consen 260 ERKHFWDIQTNIIQSRRNSWIVCKPCATRPHPYCVAMIPELVGQYKTYFWKCSSCELCRICLGP 323 (381)
T ss_pred hhhhhhcchhhhhhhhhccceeecccccCCCCcchhcCHHHHhHHhhcchhhcccHhhhccCCc
Confidence 588886642 399999999999999998432 11 22467999999854443333
No 374
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=65.48 E-value=25 Score=40.58 Aligned_cols=51 Identities=27% Similarity=0.340 Sum_probs=31.0
Q ss_pred HHHHHHHhhccCC-cEEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEeCCCCh
Q 042857 763 ALNWLRKCWHKSK-NVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLSTM 817 (1404)
Q Consensus 763 gVnwL~~~~~~~~-~~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP~Sll 817 (1404)
++..+......++ -..+..+.|.|||+..=+++..+- ...-++|+.|..++
T Consensus 39 ~l~~l~~~i~d~qg~~~vtGevGsGKTv~~Ral~~s~~----~d~~~~v~i~~~~~ 90 (269)
T COG3267 39 ALLMLHAAIADGQGILAVTGEVGSGKTVLRRALLASLN----EDQVAVVVIDKPTL 90 (269)
T ss_pred HHHHHHHHHhcCCceEEEEecCCCchhHHHHHHHHhcC----CCceEEEEecCcch
Confidence 4433433344444 456888999999998885555443 22234567777655
No 375
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=64.57 E-value=26 Score=43.80 Aligned_cols=26 Identities=27% Similarity=0.188 Sum_probs=21.6
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHHh
Q 042857 775 KNVILADEMGLGKTVSACAFISSLYC 800 (1404)
Q Consensus 775 ~~~ILADEMGLGKTiqaIa~L~~L~~ 800 (1404)
...+|..+.|+|||-.+-++...+..
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~~ 167 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALRE 167 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 45789999999999988888877754
No 376
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=64.48 E-value=93 Score=38.06 Aligned_cols=47 Identities=17% Similarity=0.150 Sum_probs=34.0
Q ss_pred CCCHHHHHHHHHHHHhhccC---CcEEEEcCCCchHHHHHHHHHHHHHhh
Q 042857 755 ALFPHQLEALNWLRKCWHKS---KNVILADEMGLGKTVSACAFISSLYCE 801 (1404)
Q Consensus 755 ~L~pyQlegVnwL~~~~~~~---~~~ILADEMGLGKTiqaIa~L~~L~~~ 801 (1404)
.-|+-|++.+...+..+..+ .|.++...+|.|||.++--++..+...
T Consensus 20 ~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~ 69 (366)
T COG1474 20 PHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEES 69 (366)
T ss_pred cccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhh
Confidence 35677877776555444333 568999999999999988777776544
No 377
>PHA03372 DNA packaging terminase subunit 1; Provisional
Probab=63.95 E-value=14 Score=47.17 Aligned_cols=108 Identities=19% Similarity=0.193 Sum_probs=60.0
Q ss_pred ccCCcEEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEeCCCCh-----HHHHHHHHHHCCCCcEEEEecchhHHHHH
Q 042857 772 HKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLSTM-----PNWLAEFALWAPNLNVVEYHGCAKARAII 846 (1404)
Q Consensus 772 ~~~~~~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP~Sll-----~nW~rEf~kw~P~l~Vvvy~G~~~~R~~i 846 (1404)
.+.-.+.|. +---|||...+.+|.-++..... -.+..|+--.-+ ..-...+.+|+|.-+++.-.|+.
T Consensus 201 KQkaTVFLV-PRRHGKTWf~VpiIsllL~s~~g-I~IGYvAHqKhvs~~Vf~EI~~~lrrwF~~~~vi~~k~~t------ 272 (668)
T PHA03372 201 KQKATVFLV-PRRHGKTWFIIPIISFLLKNIIG-ISIGYVAHQKHVSQFVLKEVEFRCRRMFPRKHTIENKDNV------ 272 (668)
T ss_pred hccceEEEe-cccCCceehHHHHHHHHHHhhcC-ceEEEEeeHHHHHHHHHHHHHHHHhhhcCccceeeecCcE------
Confidence 334445554 66789999888888877653322 246666654333 33445567999876654322210
Q ss_pred HHhhhccCCCCccccccCCCCceEEEeeHHHHHhhhccccCCCceEEEEccccccCC
Q 042857 847 RQYEWHASDPDNLNKKTSSYKFNVLLTTYEMILADSSHLRGVPWEVLVVDEGHRLKN 903 (1404)
Q Consensus 847 r~~E~~~~~~~~~~~~~~~~kfdVvITTYe~l~~d~~~L~~i~w~lVIVDEAHrlKN 903 (1404)
..+..+ ..+--++..| ....+.+++..|++|+|||||-++-
T Consensus 273 ----I~~s~p--------g~Kst~~fas----c~n~NsiRGQ~fnll~VDEA~FI~~ 313 (668)
T PHA03372 273 ----ISIDHR--------GAKSTALFAS----CYNTNSIRGQNFHLLLVDEAHFIKK 313 (668)
T ss_pred ----EEEecC--------CCcceeeehh----hccCccccCCCCCEEEEehhhccCH
Confidence 000000 0111111111 1234467888999999999999974
No 378
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=63.81 E-value=30 Score=43.16 Aligned_cols=26 Identities=23% Similarity=0.322 Sum_probs=21.4
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHHh
Q 042857 775 KNVILADEMGLGKTVSACAFISSLYC 800 (1404)
Q Consensus 775 ~~~ILADEMGLGKTiqaIa~L~~L~~ 800 (1404)
...+++...|.|||.++..++.++..
T Consensus 96 ~vI~lvG~~GsGKTTtaakLA~~L~~ 121 (437)
T PRK00771 96 QTIMLVGLQGSGKTTTAAKLARYFKK 121 (437)
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHHH
Confidence 45678999999999999888877654
No 379
>CHL00206 ycf2 Ycf2; Provisional
Probab=63.65 E-value=16 Score=52.27 Aligned_cols=41 Identities=12% Similarity=0.251 Sum_probs=31.6
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEeCCCChHHH
Q 042857 774 SKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLSTMPNW 820 (1404)
Q Consensus 774 ~~~~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP~Sll~nW 820 (1404)
.+|++|...+|+|||+.|=|++... .-|++-|.....+..|
T Consensus 1630 PKGILLiGPPGTGKTlLAKALA~es------~VPFIsISgs~fl~~~ 1670 (2281)
T CHL00206 1630 SRGILVIGSIGTGRSYLVKYLATNS------YVPFITVFLNKFLDNK 1670 (2281)
T ss_pred CCceEEECCCCCCHHHHHHHHHHhc------CCceEEEEHHHHhhcc
Confidence 3678999999999999888777543 3588777776666665
No 380
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=63.38 E-value=69 Score=41.82 Aligned_cols=41 Identities=22% Similarity=0.364 Sum_probs=27.8
Q ss_pred HHHHHHHHHHhhccC--Cc-EEEEcCCCchHHHHHHHHHHHHHh
Q 042857 760 QLEALNWLRKCWHKS--KN-VILADEMGLGKTVSACAFISSLYC 800 (1404)
Q Consensus 760 QlegVnwL~~~~~~~--~~-~ILADEMGLGKTiqaIa~L~~L~~ 800 (1404)
|...+..|...+..+ .+ .|+..+.|.|||..+..+...+..
T Consensus 22 q~~~~~~L~~~i~~~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c 65 (614)
T PRK14971 22 QEALTTTLKNAIATNKLAHAYLFCGPRGVGKTTCARIFAKTINC 65 (614)
T ss_pred cHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 444444455544444 23 589999999999988877777654
No 381
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=62.84 E-value=5.6 Score=47.76 Aligned_cols=52 Identities=19% Similarity=0.218 Sum_probs=35.8
Q ss_pred hhccCCcEEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEeCCCChHHHHHHHHHH
Q 042857 770 CWHKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLSTMPNWLAEFALW 827 (1404)
Q Consensus 770 ~~~~~~~~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP~Sll~nW~rEf~kw 827 (1404)
.+....|.+|....|+|||+.|-+..... ..+|+=|--..+...|.-|-++.
T Consensus 123 Ll~p~kGiLL~GPpG~GKTmlAKA~Akea------ga~fInv~~s~lt~KWfgE~eKl 174 (386)
T KOG0737|consen 123 LLRPPKGILLYGPPGTGKTMLAKAIAKEA------GANFINVSVSNLTSKWFGEAQKL 174 (386)
T ss_pred cccCCccceecCCCCchHHHHHHHHHHHc------CCCcceeeccccchhhHHHHHHH
Confidence 34467899999999999999988766432 23455555555667787665554
No 382
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=62.59 E-value=49 Score=35.83 Aligned_cols=71 Identities=17% Similarity=0.330 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHHcCCeEEEEecchhHHHHHHHHHhhhcCCceEEE-EeCCCCHHHHHHHHHHHhcCCCceEE
Q 042857 1074 TLLHSMLKVLYKEGHRVLIFSQMTKLLDILEDYLNIEFGPKTYER-VDGSVSVGDRQAAITRFNQDKSRFVF 1144 (1404)
Q Consensus 1074 ~~L~kLL~kl~~~G~KVLIFSq~~~~LDiLed~L~~~f~g~~y~r-LdGs~s~~eRq~~Id~Fn~~~s~~Vf 1144 (1404)
.++..++......+.+|.++-.....++.+...|...++++.+.- .+|-....+.+++++..|+.+..+||
T Consensus 33 dl~~~ll~~~~~~~~~v~llG~~~~~~~~~~~~l~~~yp~l~i~g~~~g~~~~~~~~~i~~~I~~~~pdiv~ 104 (171)
T cd06533 33 DLMPALLELAAQKGLRVFLLGAKPEVLEKAAERLRARYPGLKIVGYHHGYFGPEEEEEIIERINASGADILF 104 (171)
T ss_pred HHHHHHHHHHHHcCCeEEEECCCHHHHHHHHHHHHHHCCCcEEEEecCCCCChhhHHHHHHHHHHcCCCEEE
Confidence 456777787778899999999999999999999999999998776 78998888888888888876655433
No 383
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=62.59 E-value=0.93 Score=41.96 Aligned_cols=47 Identities=32% Similarity=0.713 Sum_probs=20.8
Q ss_pred cccccccCC----Cc--eEEcC--CCCCcccccccCCCCCCCCCC-------CccCcccccc
Q 042857 76 YECVICDLG----GN--LLCCD--SCPRTYHLQCLDPPLKRIPNG-------KWQCPKCTQK 122 (1404)
Q Consensus 76 ~~C~~C~~~----g~--ll~Cd--~C~~~~H~~Cl~Ppl~~~P~g-------~W~C~~C~~~ 122 (1404)
..|.+|... +. .+.|+ .|...||+.||.-.+...+.+ .+-||.|...
T Consensus 3 ~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~ 64 (70)
T PF11793_consen 3 LECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSP 64 (70)
T ss_dssp -S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SE
T ss_pred CCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCe
Confidence 358888652 22 57798 899999999997655433322 2569999865
No 384
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=62.39 E-value=19 Score=41.70 Aligned_cols=50 Identities=16% Similarity=0.104 Sum_probs=38.0
Q ss_pred CHHHHHHHHHHHHhhccCCcEEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEe
Q 042857 757 FPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLV 812 (1404)
Q Consensus 757 ~pyQlegVnwL~~~~~~~~~~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVv 812 (1404)
.|+....+..+......+.+.+|..+.|+|||..+.++...+ ..|++.++
T Consensus 4 t~~~~~l~~~~l~~l~~g~~vLL~G~~GtGKT~lA~~la~~l------g~~~~~i~ 53 (262)
T TIGR02640 4 TDAVKRVTSRALRYLKSGYPVHLRGPAGTGKTTLAMHVARKR------DRPVMLIN 53 (262)
T ss_pred CHHHHHHHHHHHHHHhcCCeEEEEcCCCCCHHHHHHHHHHHh------CCCEEEEe
Confidence 356666677777777778999999999999999988776532 35777665
No 385
>PRK04132 replication factor C small subunit; Provisional
Probab=61.91 E-value=39 Score=45.51 Aligned_cols=45 Identities=20% Similarity=0.299 Sum_probs=28.7
Q ss_pred CceEEEEccccccCCC-ccHHHHHHhhcccccEEEEeccCCCCChH
Q 042857 889 PWEVLVVDEGHRLKNS-GSKLFSLLNSFSFQHRVLLTGTPLQNNIG 933 (1404)
Q Consensus 889 ~w~lVIVDEAHrlKN~-~Sk~~~~L~~l~~~~rLLLTGTPlqNnl~ 933 (1404)
++.++||||+|+|... ...+.+.+.......+++|+.++...=+.
T Consensus 630 ~~KVvIIDEaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~ 675 (846)
T PRK04132 630 SFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIE 675 (846)
T ss_pred CCEEEEEECcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCch
Confidence 5789999999999531 12233444444566788888777544333
No 386
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=61.86 E-value=57 Score=35.79 Aligned_cols=70 Identities=17% Similarity=0.242 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHcCCeEEEEecchhHHHHHHHHHhhhcCCceEEEEeCCCCHHHHHHHHHHHhcCCCceE
Q 042857 1074 TLLHSMLKVLYKEGHRVLIFSQMTKLLDILEDYLNIEFGPKTYERVDGSVSVGDRQAAITRFNQDKSRFV 1143 (1404)
Q Consensus 1074 ~~L~kLL~kl~~~G~KVLIFSq~~~~LDiLed~L~~~f~g~~y~rLdGs~s~~eRq~~Id~Fn~~~s~~V 1143 (1404)
.++..++......|.+|.++-....+++.+.+.|...|++..+.-.+|-.+..+.++++++-|+.+..++
T Consensus 35 dl~~~l~~~~~~~~~~vfllG~~~~v~~~~~~~l~~~yP~l~i~g~~g~f~~~~~~~i~~~I~~s~~dil 104 (177)
T TIGR00696 35 DLMEELCQRAGKEKLPIFLYGGKPDVLQQLKVKLIKEYPKLKIVGAFGPLEPEERKAALAKIARSGAGIV 104 (177)
T ss_pred HHHHHHHHHHHHcCCeEEEECCCHHHHHHHHHHHHHHCCCCEEEEECCCCChHHHHHHHHHHHHcCCCEE
Confidence 5667777777778899999999999999999999999999987777999988888888888876555533
No 387
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=61.12 E-value=27 Score=42.67 Aligned_cols=44 Identities=11% Similarity=0.051 Sum_probs=32.6
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEeCCCChHHHHHH
Q 042857 774 SKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLSTMPNWLAE 823 (1404)
Q Consensus 774 ~~~~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP~Sll~nW~rE 823 (1404)
..+.+|....|.|||+++-+++..+ .-++++|-...++..|.-|
T Consensus 148 PlgllL~GPPGcGKTllAraiA~el------g~~~i~vsa~eL~sk~vGE 191 (413)
T PLN00020 148 PLILGIWGGKGQGKSFQCELVFKKM------GIEPIVMSAGELESENAGE 191 (413)
T ss_pred CeEEEeeCCCCCCHHHHHHHHHHHc------CCCeEEEEHHHhhcCcCCc
Confidence 4567889999999999998887655 2356777666677777544
No 388
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=61.06 E-value=25 Score=43.57 Aligned_cols=39 Identities=21% Similarity=0.108 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHhhccCCcEEEEcCCCchHHHHHHHHHHH
Q 042857 759 HQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISS 797 (1404)
Q Consensus 759 yQlegVnwL~~~~~~~~~~ILADEMGLGKTiqaIa~L~~ 797 (1404)
.++..+..|+....++.|.|+....|+|||-.+.++..+
T Consensus 194 ~k~~~L~rl~~fve~~~Nli~lGp~GTGKThla~~l~~~ 232 (449)
T TIGR02688 194 QKLLLLARLLPLVEPNYNLIELGPKGTGKSYIYNNLSPY 232 (449)
T ss_pred HHHHHHHhhHHHHhcCCcEEEECCCCCCHHHHHHHHhHH
Confidence 344444445455677999999999999999888876655
No 389
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=61.05 E-value=21 Score=38.32 Aligned_cols=48 Identities=19% Similarity=0.173 Sum_probs=38.1
Q ss_pred EEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEeCCCChHHHHHHHHHH
Q 042857 777 VILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLSTMPNWLAEFALW 827 (1404)
Q Consensus 777 ~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP~Sll~nW~rEf~kw 827 (1404)
.+|+.+.|.|||..++.|+...... ..+++++.......+..+.+..+
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~---g~~v~~~s~e~~~~~~~~~~~~~ 49 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLAR---GEPGLYVTLEESPEELIENAESL 49 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHC---CCcEEEEECCCCHHHHHHHHHHc
Confidence 5788999999999999998877632 45789998888877777766655
No 390
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=60.53 E-value=4.5 Score=35.67 Aligned_cols=28 Identities=29% Similarity=0.985 Sum_probs=24.6
Q ss_pred ccccccC----CCceEEcCCCCCcccccccCC
Q 042857 77 ECVICDL----GGNLLCCDSCPRTYHLQCLDP 104 (1404)
Q Consensus 77 ~C~~C~~----~g~ll~Cd~C~~~~H~~Cl~P 104 (1404)
.|.+|+. +++++.|..|...||..|..+
T Consensus 7 ~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~~ 38 (54)
T PF14446_consen 7 KCPVCGKKFKDGDDIVVCPECGAPYHRDCWEK 38 (54)
T ss_pred cChhhCCcccCCCCEEECCCCCCcccHHHHhh
Confidence 5888977 567999999999999999974
No 391
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=60.18 E-value=38 Score=38.43 Aligned_cols=52 Identities=6% Similarity=0.117 Sum_probs=36.6
Q ss_pred ccCCcEEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEeCCCChHHHHHHHHH
Q 042857 772 HKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLSTMPNWLAEFAL 826 (1404)
Q Consensus 772 ~~~~~~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP~Sll~nW~rEf~k 826 (1404)
..+.-.+|..+.|.|||..++.++..+... ..+++.++......+-.+.+..
T Consensus 22 ~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~---g~~~~yi~~e~~~~~~~~~~~~ 73 (230)
T PRK08533 22 PAGSLILIEGDESTGKSILSQRLAYGFLQN---GYSVSYVSTQLTTTEFIKQMMS 73 (230)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHhC---CCcEEEEeCCCCHHHHHHHHHH
Confidence 346677899999999999998888876533 2467777766555554444443
No 392
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=60.11 E-value=74 Score=34.34 Aligned_cols=53 Identities=15% Similarity=0.208 Sum_probs=34.5
Q ss_pred hccccCCCceEEEEccccccCCC----ccHHHHHHhhcccccEEEEeccCCCCChHH
Q 042857 882 SSHLRGVPWEVLVVDEGHRLKNS----GSKLFSLLNSFSFQHRVLLTGTPLQNNIGE 934 (1404)
Q Consensus 882 ~~~L~~i~w~lVIVDEAHrlKN~----~Sk~~~~L~~l~~~~rLLLTGTPlqNnl~E 934 (1404)
...+....+++||+||.=..-+. ...+...+..-....-++|||--.+..+.|
T Consensus 88 ~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p~~l~e 144 (159)
T cd00561 88 KEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAPKELIE 144 (159)
T ss_pred HHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCCHHHHH
Confidence 34455678999999998665332 234566666655666799999754443333
No 393
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=59.85 E-value=41 Score=40.78 Aligned_cols=25 Identities=36% Similarity=0.355 Sum_probs=20.6
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHH
Q 042857 774 SKNVILADEMGLGKTVSACAFISSL 798 (1404)
Q Consensus 774 ~~~~ILADEMGLGKTiqaIa~L~~L 798 (1404)
..+.+|..+.|+|||..+-++...+
T Consensus 156 p~gvLL~GppGtGKT~lakaia~~l 180 (364)
T TIGR01242 156 PKGVLLYGPPGTGKTLLAKAVAHET 180 (364)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhC
Confidence 4678999999999999887776543
No 394
>PRK07952 DNA replication protein DnaC; Validated
Probab=59.47 E-value=31 Score=39.76 Aligned_cols=61 Identities=21% Similarity=0.286 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHhh---cc-CCcEEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEeCCCChHHHHHHHH
Q 042857 758 PHQLEALNWLRKCW---HK-SKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLSTMPNWLAEFA 825 (1404)
Q Consensus 758 pyQlegVnwL~~~~---~~-~~~~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP~Sll~nW~rEf~ 825 (1404)
+.|..++..+.... .. ..+.+|....|+|||..+.+++.++... ..+++++ .+..|...+.
T Consensus 79 ~~q~~al~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~l~~~---g~~v~~i----t~~~l~~~l~ 143 (244)
T PRK07952 79 EGQMNALSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNELLLR---GKSVLII----TVADIMSAMK 143 (244)
T ss_pred chHHHHHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHhc---CCeEEEE----EHHHHHHHHH
Confidence 44666666554322 22 2478999999999999999999888653 2345555 3566666554
No 395
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=58.81 E-value=61 Score=35.13 Aligned_cols=70 Identities=17% Similarity=0.277 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHHcCCeEEEEecchhHHHHHHHHHhhhcCCceEE-EEeCCCCHHHHHHHHHHHhcCCCceE
Q 042857 1074 TLLHSMLKVLYKEGHRVLIFSQMTKLLDILEDYLNIEFGPKTYE-RVDGSVSVGDRQAAITRFNQDKSRFV 1143 (1404)
Q Consensus 1074 ~~L~kLL~kl~~~G~KVLIFSq~~~~LDiLed~L~~~f~g~~y~-rLdGs~s~~eRq~~Id~Fn~~~s~~V 1143 (1404)
.++..++......+.++.++-.....++.+...|...|+++.+. ..+|-.+..+..++++..|..+-..+
T Consensus 35 dl~~~l~~~~~~~~~~ifllG~~~~~~~~~~~~l~~~yP~l~ivg~~~g~f~~~~~~~i~~~I~~~~pdiv 105 (172)
T PF03808_consen 35 DLFPDLLRRAEQRGKRIFLLGGSEEVLEKAAANLRRRYPGLRIVGYHHGYFDEEEEEAIINRINASGPDIV 105 (172)
T ss_pred HHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHCCCeEEEEecCCCCChhhHHHHHHHHHHcCCCEE
Confidence 56677777777888999999999999999999999999988877 56777888889999999987655533
No 396
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=58.70 E-value=74 Score=39.21 Aligned_cols=132 Identities=14% Similarity=0.204 Sum_probs=71.0
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEeCCCChHHHHHHHHHHCC--CCcEEEEecchhHHHHHHHhhh
Q 042857 774 SKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLSTMPNWLAEFALWAP--NLNVVEYHGCAKARAIIRQYEW 851 (1404)
Q Consensus 774 ~~~~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP~Sll~nW~rEf~kw~P--~l~Vvvy~G~~~~R~~ir~~E~ 851 (1404)
++-..|...+|.|||-+..-+.+.+.... ....+-||+-.+--.-=..+++.++- ++.
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~-~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp------------------- 262 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLK-KKKKVAIITTDTYRIGAVEQLKTYADIMGVP------------------- 262 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhc-cCcceEEEEeccchhhHHHHHHHHHHHhCCc-------------------
Confidence 56677999999999976554444333122 23345555443322222333333321 111
Q ss_pred ccCCCCccccccCCCCceEEEeeHHHHHhhhccccCCCceEEEEccccccCCCccHHHHHHhhc-----ccccEEEEecc
Q 042857 852 HASDPDNLNKKTSSYKFNVLLTTYEMILADSSHLRGVPWEVLVVDEGHRLKNSGSKLFSLLNSF-----SFQHRVLLTGT 926 (1404)
Q Consensus 852 ~~~~~~~~~~~~~~~kfdVvITTYe~l~~d~~~L~~i~w~lVIVDEAHrlKN~~Sk~~~~L~~l-----~~~~rLLLTGT 926 (1404)
+ .++.+..-+......|.. .++|.||=+-|---...++. -|..+ .....|.|++|
T Consensus 263 ----------------~-~vv~~~~el~~ai~~l~~--~d~ILVDTaGrs~~D~~~i~-el~~~~~~~~~i~~~Lvlsat 322 (407)
T COG1419 263 ----------------L-EVVYSPKELAEAIEALRD--CDVILVDTAGRSQYDKEKIE-ELKELIDVSHSIEVYLVLSAT 322 (407)
T ss_pred ----------------e-EEecCHHHHHHHHHHhhc--CCEEEEeCCCCCccCHHHHH-HHHHHHhccccceEEEEEecC
Confidence 1 233344444444444433 37899997644322122222 22222 34456889999
Q ss_pred CCCCChHHHHHHhhhhCCC
Q 042857 927 PLQNNIGEMYNLLNFLQPA 945 (1404)
Q Consensus 927 PlqNnl~EL~sLL~fL~P~ 945 (1404)
-=.+.+.+++..+.++...
T Consensus 323 ~K~~dlkei~~~f~~~~i~ 341 (407)
T COG1419 323 TKYEDLKEIIKQFSLFPID 341 (407)
T ss_pred cchHHHHHHHHHhccCCcc
Confidence 9888888888888877655
No 397
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=58.49 E-value=31 Score=39.79 Aligned_cols=23 Identities=17% Similarity=0.141 Sum_probs=17.4
Q ss_pred ccCCcEEEEcCCCchHHHHHHHH
Q 042857 772 HKSKNVILADEMGLGKTVSACAF 794 (1404)
Q Consensus 772 ~~~~~~ILADEMGLGKTiqaIa~ 794 (1404)
..|..+++..+.|.|||..+-.+
T Consensus 14 ~~Gqr~~I~G~~G~GKTTLlr~I 36 (249)
T cd01128 14 GKGQRGLIVAPPKAGKTTLLQSI 36 (249)
T ss_pred CCCCEEEEECCCCCCHHHHHHHH
Confidence 45778888889999999654333
No 398
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=58.26 E-value=64 Score=40.18 Aligned_cols=22 Identities=27% Similarity=0.398 Sum_probs=18.6
Q ss_pred EEEEcCCCchHHHHHHHHHHHH
Q 042857 777 VILADEMGLGKTVSACAFISSL 798 (1404)
Q Consensus 777 ~ILADEMGLGKTiqaIa~L~~L 798 (1404)
.++....|.|||.++.-++..+
T Consensus 226 i~lvGptGvGKTTtaaKLA~~~ 247 (432)
T PRK12724 226 VFFVGPTGSGKTTSIAKLAAKY 247 (432)
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 5688899999999998888755
No 399
>COG4626 Phage terminase-like protein, large subunit [General function prediction only]
Probab=57.83 E-value=70 Score=40.78 Aligned_cols=169 Identities=14% Similarity=0.130 Sum_probs=87.9
Q ss_pred CCCCHHHHHHHHHHHHhhccCCc------EEEEcCCCchHHHHHHHHHHHHH-hhccCCCcEEEEeCCCCh-HHHHHHHH
Q 042857 754 GALFPHQLEALNWLRKCWHKSKN------VILADEMGLGKTVSACAFISSLY-CEFKAKLPCLVLVPLSTM-PNWLAEFA 825 (1404)
Q Consensus 754 ~~L~pyQlegVnwL~~~~~~~~~------~ILADEMGLGKTiqaIa~L~~L~-~~~~~~gP~LIVvP~Sll-~nW~rEf~ 825 (1404)
..|.|||.-.+.-|.-.+.++.+ +++--.-|=|||..+.+++.+.. ........++|++|.--. .+--.++.
T Consensus 60 ~~l~PwQkFiia~l~G~~~k~T~~rrf~e~fI~v~RkngKt~l~A~i~~~~~l~~~~~~~~~~i~A~s~~qa~~~F~~ar 139 (546)
T COG4626 60 ESLEPWQKFIVAALFGFYDKQTGIRRFKEAFIFIPRKNGKSTLAAGIMMTALLLNWRSGAGIYILAPSVEQAANSFNPAR 139 (546)
T ss_pred cccchHHHHHHHHHhceeecCCCceEEEEEEEEEecCCchHHHHHHHHHHHHHhhhhcCCcEEEEeccHHHHHHhhHHHH
Confidence 46999999999877766655544 46777889999987765555432 233444467888886422 22222222
Q ss_pred HHCCCCcEEEEecchhHHHHHHHhhhccCCCCccccccCCCCceEEEeeHH-------HHHhhhccccCCCceEEEEccc
Q 042857 826 LWAPNLNVVEYHGCAKARAIIRQYEWHASDPDNLNKKTSSYKFNVLLTTYE-------MILADSSHLRGVPWEVLVVDEG 898 (1404)
Q Consensus 826 kw~P~l~Vvvy~G~~~~R~~ir~~E~~~~~~~~~~~~~~~~kfdVvITTYe-------~l~~d~~~L~~i~w~lVIVDEA 898 (1404)
...-... .-+.. .. ..-+-..+++. .+..+...+.+.+..++|+||-
T Consensus 140 ~mv~~~~--------~l~~~-----------------~~-~q~~s~~i~~~~~~s~ik~~aa~~~~~Dg~~~~~~I~DEi 193 (546)
T COG4626 140 DMVKRDD--------DLRDL-----------------CN-VQTHSRTITHRKTDSTIKAVAADPNTVDGLNSVGAIIDEL 193 (546)
T ss_pred HHHHhCc--------chhhh-----------------hc-cccceeEEEecccceeeeeeccCCCcccCCCcceEEEehh
Confidence 1110000 00000 00 01111112221 2234566778889999999999
Q ss_pred cccCCCccHHHHHHhh-cc--cccE-EEEe--ccCCCCChHHHHHHhhhhCCCCCCC
Q 042857 899 HRLKNSGSKLFSLLNS-FS--FQHR-VLLT--GTPLQNNIGEMYNLLNFLQPASFPS 949 (1404)
Q Consensus 899 HrlKN~~Sk~~~~L~~-l~--~~~r-LLLT--GTPlqNnl~EL~sLL~fL~P~~f~s 949 (1404)
|.+.+.. ..+..+.. +. .... +.+| |-|...-+.+.+....-+..+...+
T Consensus 194 h~f~~~~-~~~~~~~~g~~ar~~~l~~~ITT~g~~~~g~~~q~~~y~k~vl~g~~~d 249 (546)
T COG4626 194 HLFGKQE-DMYSEAKGGLGARPEGLVVYITTSGDPPAGVFKQKLQYAKDVLDGKIKD 249 (546)
T ss_pred hhhcCHH-HHHHHHHhhhccCcCceEEEEecCCCCCccHHHHHHHHHHHHhcCCcCC
Confidence 9998765 44444443 32 2222 3333 3344444444444444444443333
No 400
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=57.40 E-value=1.5e+02 Score=31.55 Aligned_cols=24 Identities=29% Similarity=0.380 Sum_probs=19.8
Q ss_pred EEEEcCCCchHHHHHHHHHHHHHh
Q 042857 777 VILADEMGLGKTVSACAFISSLYC 800 (1404)
Q Consensus 777 ~ILADEMGLGKTiqaIa~L~~L~~ 800 (1404)
.++....|.|||..+..++..+..
T Consensus 3 ~~~~G~~G~GKTt~~~~la~~~~~ 26 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLALYLKK 26 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH
Confidence 467789999999999888877654
No 401
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=56.99 E-value=57 Score=44.60 Aligned_cols=98 Identities=15% Similarity=0.155 Sum_probs=67.8
Q ss_pred hhhHHHHHHHHHHHHHHcCCeEEEEecchhHHHHHHHHHhhhcC--CceEEEEeCCCCHHHHHHHHHHHhcCCCceEEEe
Q 042857 1069 ASAKLTLLHSMLKVLYKEGHRVLIFSQMTKLLDILEDYLNIEFG--PKTYERVDGSVSVGDRQAAITRFNQDKSRFVFLL 1146 (1404)
Q Consensus 1069 ~SgKl~~L~kLL~kl~~~G~KVLIFSq~~~~LDiLed~L~~~f~--g~~y~rLdGs~s~~eRq~~Id~Fn~~~s~~VfLL 1146 (1404)
.|||..+....+-.....|.+++|.++.+..+......+...+. ++.+..++|.++..++.+.+..+..+... +++
T Consensus 482 GsGKT~val~a~l~al~~g~qvlvLvPT~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~d--IVI 559 (926)
T TIGR00580 482 GFGKTEVAMRAAFKAVLDGKQVAVLVPTTLLAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASGKID--ILI 559 (926)
T ss_pred CccHHHHHHHHHHHHHHhCCeEEEEeCcHHHHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCCce--EEE
Confidence 47887665544444456789999999999988877777665544 45677899999999999999988765433 445
Q ss_pred ecc-cccccccccCCCEEEEEcC
Q 042857 1147 STR-SCGLGINLATADTVIIYDS 1168 (1404)
Q Consensus 1147 STr-AgG~GINL~~AdtVIi~Ds 1168 (1404)
.|. .....+.+.....||+=+-
T Consensus 560 GTp~ll~~~v~f~~L~llVIDEa 582 (926)
T TIGR00580 560 GTHKLLQKDVKFKDLGLLIIDEE 582 (926)
T ss_pred chHHHhhCCCCcccCCEEEeecc
Confidence 544 3344566666666665443
No 402
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=56.96 E-value=93 Score=37.38 Aligned_cols=51 Identities=18% Similarity=0.129 Sum_probs=31.3
Q ss_pred HHHhhccCCcEEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEeCCCChHHH
Q 042857 767 LRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLSTMPNW 820 (1404)
Q Consensus 767 L~~~~~~~~~~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP~Sll~nW 820 (1404)
+...-.....++|..|.|+||+..|-++-.. .....+||+.|--..+-..|
T Consensus 15 ~~~~a~~~~pVLI~GE~GtGK~~lAr~iH~~---s~r~~~pfv~vnc~~~~~~~ 65 (329)
T TIGR02974 15 VSRLAPLDRPVLIIGERGTGKELIAARLHYL---SKRWQGPLVKLNCAALSENL 65 (329)
T ss_pred HHHHhCCCCCEEEECCCCChHHHHHHHHHHh---cCccCCCeEEEeCCCCChHH
Confidence 3344455788999999999999876543221 12244687766544433333
No 403
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=56.67 E-value=47 Score=44.15 Aligned_cols=23 Identities=30% Similarity=0.342 Sum_probs=18.8
Q ss_pred CcEEEEcCCCchHHHHHHHHHHH
Q 042857 775 KNVILADEMGLGKTVSACAFISS 797 (1404)
Q Consensus 775 ~~~ILADEMGLGKTiqaIa~L~~ 797 (1404)
.+.||..+.|+|||..+-++...
T Consensus 53 ~slLL~GPpGtGKTTLA~aIA~~ 75 (725)
T PRK13341 53 GSLILYGPPGVGKTTLARIIANH 75 (725)
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999877766543
No 404
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=56.61 E-value=30 Score=44.02 Aligned_cols=27 Identities=41% Similarity=0.399 Sum_probs=22.5
Q ss_pred cCCcEEEEcCCCchHHHHHHHHHHHHH
Q 042857 773 KSKNVILADEMGLGKTVSACAFISSLY 799 (1404)
Q Consensus 773 ~~~~~ILADEMGLGKTiqaIa~L~~L~ 799 (1404)
...+.+|..+.|.|||..+-+++..+.
T Consensus 215 ~p~GILLyGPPGTGKT~LAKAlA~eL~ 241 (512)
T TIGR03689 215 PPKGVLLYGPPGCGKTLIAKAVANSLA 241 (512)
T ss_pred CCcceEEECCCCCcHHHHHHHHHHhhc
Confidence 357899999999999998888877663
No 405
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=56.45 E-value=43 Score=37.71 Aligned_cols=52 Identities=15% Similarity=0.217 Sum_probs=38.8
Q ss_pred cCCcEEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEeCCCChHHHHHHHHHH
Q 042857 773 KSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLSTMPNWLAEFALW 827 (1404)
Q Consensus 773 ~~~~~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP~Sll~nW~rEf~kw 827 (1404)
.+.-.+++.+.|.|||.-+..|+..... ...+++.+.-........+.+..+
T Consensus 24 ~g~~~~i~G~~GsGKt~l~~~~~~~~~~---~g~~~~y~~~e~~~~~~~~~~~~~ 75 (234)
T PRK06067 24 FPSLILIEGDHGTGKSVLSQQFVYGALK---QGKKVYVITTENTSKSYLKQMESV 75 (234)
T ss_pred CCcEEEEECCCCCChHHHHHHHHHHHHh---CCCEEEEEEcCCCHHHHHHHHHHC
Confidence 3455788999999999999999876543 245788888777777776766654
No 406
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=56.27 E-value=29 Score=46.25 Aligned_cols=27 Identities=30% Similarity=0.410 Sum_probs=21.9
Q ss_pred cCCcEEEEcCCCchHHHHHHHHHHHHH
Q 042857 773 KSKNVILADEMGLGKTVSACAFISSLY 799 (1404)
Q Consensus 773 ~~~~~ILADEMGLGKTiqaIa~L~~L~ 799 (1404)
...+.||..+.|.|||..+-++...+.
T Consensus 206 ~~~n~LLvGppGvGKT~lae~la~~i~ 232 (758)
T PRK11034 206 RKNNPLLVGESGVGKTAIAEGLAWRIV 232 (758)
T ss_pred CCCCeEEECCCCCCHHHHHHHHHHHHH
Confidence 457899999999999998877765543
No 407
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=55.68 E-value=59 Score=46.62 Aligned_cols=61 Identities=18% Similarity=0.144 Sum_probs=41.9
Q ss_pred CCCHHHHHHHHHHHHhhccCCcEEEEcCCCchHHHHHHHHHHHHHhhc-cCCCcEEEEeCCCCh
Q 042857 755 ALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEF-KAKLPCLVLVPLSTM 817 (1404)
Q Consensus 755 ~L~pyQlegVnwL~~~~~~~~~~ILADEMGLGKTiqaIa~L~~L~~~~-~~~gP~LIVvP~Sll 817 (1404)
.|.+-|.+++..++. ...+-++|..--|.|||.+.-+++..+.... .....++.++|..--
T Consensus 835 ~Lt~~Qr~Av~~iLt--s~dr~~~IqG~AGTGKTT~l~~i~~~~~~l~e~~g~~V~glAPTgkA 896 (1623)
T PRK14712 835 KLTSGQRAATRMILE--TSDRFTVVQGYAGVGKTTQFRAVMSAVNMLPESERPRVVGLGPTHRA 896 (1623)
T ss_pred ccCHHHHHHHHHHHh--CCCceEEEEeCCCCCHHHHHHHHHHHHHHHhhccCceEEEEechHHH
Confidence 689999999987765 2346788999999999988655554432211 122357778886544
No 408
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=55.62 E-value=75 Score=37.61 Aligned_cols=46 Identities=17% Similarity=0.247 Sum_probs=33.2
Q ss_pred CCHHHHHHHHHHHHhhccCC--cEEEEcCCCchHHHHHHHHHHHHHhhc
Q 042857 756 LFPHQLEALNWLRKCWHKSK--NVILADEMGLGKTVSACAFISSLYCEF 802 (1404)
Q Consensus 756 L~pyQlegVnwL~~~~~~~~--~~ILADEMGLGKTiqaIa~L~~L~~~~ 802 (1404)
|...|-.++..|...+.+++ +++|... |.||+..|..|+..+....
T Consensus 3 l~~~q~~~~~~L~~~~~~~rl~hAyLf~G-~~G~~~~A~~~A~~llC~~ 50 (290)
T PRK07276 3 LKQKQPKVFQRFQTILEQDRLNHAYLFSG-DFASFEMALFLAQSLFCEQ 50 (290)
T ss_pred HHHHHHHHHHHHHHHHHcCCcceeeeeeC-CccHHHHHHHHHHHHcCCC
Confidence 55667778888877776663 4555433 6899999999998887654
No 409
>PRK05973 replicative DNA helicase; Provisional
Probab=55.57 E-value=27 Score=40.07 Aligned_cols=59 Identities=14% Similarity=0.008 Sum_probs=41.4
Q ss_pred HHHHhhccCCcEEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEeCCCChHHHHHHHHHH
Q 042857 766 WLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLSTMPNWLAEFALW 827 (1404)
Q Consensus 766 wL~~~~~~~~~~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP~Sll~nW~rEf~kw 827 (1404)
++...+..+.-.+|+...|.|||+.++-|+...... ..+++++.-...-.+-.+.+..+
T Consensus 56 ~l~GGl~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~---Ge~vlyfSlEes~~~i~~R~~s~ 114 (237)
T PRK05973 56 ELFSQLKPGDLVLLGARPGHGKTLLGLELAVEAMKS---GRTGVFFTLEYTEQDVRDRLRAL 114 (237)
T ss_pred HhcCCCCCCCEEEEEeCCCCCHHHHHHHHHHHHHhc---CCeEEEEEEeCCHHHHHHHHHHc
Confidence 344455667778999999999999999998876533 34788887665555555544443
No 410
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=55.40 E-value=19 Score=39.29 Aligned_cols=51 Identities=16% Similarity=0.236 Sum_probs=33.6
Q ss_pred hccccCCCceEEEEccccccCCCc----cHHHHHHhhcccccEEEEeccCCCCCh
Q 042857 882 SSHLRGVPWEVLVVDEGHRLKNSG----SKLFSLLNSFSFQHRVLLTGTPLQNNI 932 (1404)
Q Consensus 882 ~~~L~~i~w~lVIVDEAHrlKN~~----Sk~~~~L~~l~~~~rLLLTGTPlqNnl 932 (1404)
...+..-.|++||+||.=..-+.+ ..+...|..-...--++|||.-....+
T Consensus 90 ~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~p~~l 144 (173)
T TIGR00708 90 KEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGCPQDL 144 (173)
T ss_pred HHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCCCHHH
Confidence 345666789999999986554422 345566655555567999998443333
No 411
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=55.27 E-value=48 Score=39.24 Aligned_cols=42 Identities=19% Similarity=0.257 Sum_probs=28.6
Q ss_pred HHHHHHHHHHhhccC--Cc-EEEEcCCCchHHHHHHHHHHHHHhh
Q 042857 760 QLEALNWLRKCWHKS--KN-VILADEMGLGKTVSACAFISSLYCE 801 (1404)
Q Consensus 760 QlegVnwL~~~~~~~--~~-~ILADEMGLGKTiqaIa~L~~L~~~ 801 (1404)
|...+..+...+..+ .+ .++..+-|.|||..+.+++..+...
T Consensus 9 ~~~~~~~l~~~~~~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~ 53 (313)
T PRK05564 9 HENIKNRIKNSIIKNRFSHAHIIVGEDGIGKSLLAKEIALKILGK 53 (313)
T ss_pred cHHHHHHHHHHHHcCCCCceEEeECCCCCCHHHHHHHHHHHHcCC
Confidence 334444444544444 23 3799999999999999998887643
No 412
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=55.23 E-value=60 Score=47.03 Aligned_cols=63 Identities=17% Similarity=0.139 Sum_probs=43.4
Q ss_pred CCCCHHHHHHHHHHHHhhccCCcEEEEcCCCchHHHHHHHHHHHHHhhcc-CCCcEEEEeCCCChH
Q 042857 754 GALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFK-AKLPCLVLVPLSTMP 818 (1404)
Q Consensus 754 ~~L~pyQlegVnwL~~~~~~~~~~ILADEMGLGKTiqaIa~L~~L~~~~~-~~gP~LIVvP~Sll~ 818 (1404)
..|.+-|.+++..++. ...+-.+|..-.|.|||.+.-+++..+..... ....++.++|+.--.
T Consensus 966 ~~Lt~~Q~~Av~~il~--s~dr~~~I~G~AGTGKTT~l~~v~~~~~~l~~~~~~~V~glAPTgrAA 1029 (1747)
T PRK13709 966 EGLTSGQRAATRMILE--STDRFTVVQGYAGVGKTTQFRAVMSAVNTLPESERPRVVGLGPTHRAV 1029 (1747)
T ss_pred CCCCHHHHHHHHHHHh--CCCcEEEEEeCCCCCHHHHHHHHHHHHHHhhcccCceEEEECCcHHHH
Confidence 4689999999988765 23457789999999999877666555432111 223577788876443
No 413
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=54.78 E-value=8 Score=46.33 Aligned_cols=44 Identities=32% Similarity=0.761 Sum_probs=33.2
Q ss_pred cccccccC---CCceEEcCCCCCcccccccCCCCCCCCCCCccCcccccc
Q 042857 76 YECVICDL---GGNLLCCDSCPRTYHLQCLDPPLKRIPNGKWQCPKCTQK 122 (1404)
Q Consensus 76 ~~C~~C~~---~g~ll~Cd~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~ 122 (1404)
..|.+|.. .|+.|--=-|.-.||..|.+|.|..- .=+||-|+..
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~---r~~CPvCK~d 276 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQT---RTFCPVCKRD 276 (348)
T ss_pred ceEEEeecccccCCeeeEecCCCchhhccchhhHhhc---CccCCCCCCc
Confidence 57999987 36633334577889999999998763 2379999875
No 414
>CHL00176 ftsH cell division protein; Validated
Probab=54.57 E-value=78 Score=41.52 Aligned_cols=24 Identities=38% Similarity=0.440 Sum_probs=19.9
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHH
Q 042857 774 SKNVILADEMGLGKTVSACAFISS 797 (1404)
Q Consensus 774 ~~~~ILADEMGLGKTiqaIa~L~~ 797 (1404)
..+.+|..+.|+|||..+-++...
T Consensus 216 p~gVLL~GPpGTGKT~LAralA~e 239 (638)
T CHL00176 216 PKGVLLVGPPGTGKTLLAKAIAGE 239 (638)
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 357899999999999988777554
No 415
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=54.31 E-value=10 Score=41.41 Aligned_cols=47 Identities=26% Similarity=0.316 Sum_probs=31.4
Q ss_pred ccCCcEEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEeCCCChHHHHHHHH
Q 042857 772 HKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLSTMPNWLAEFA 825 (1404)
Q Consensus 772 ~~~~~~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP~Sll~nW~rEf~ 825 (1404)
.++.|.+|...+|.|||..+.+++..+... ..+++.+. ...+..+++
T Consensus 45 ~~~~~l~l~G~~G~GKThLa~ai~~~~~~~---g~~v~f~~----~~~L~~~l~ 91 (178)
T PF01695_consen 45 ENGENLILYGPPGTGKTHLAVAIANEAIRK---GYSVLFIT----ASDLLDELK 91 (178)
T ss_dssp SC--EEEEEESTTSSHHHHHHHHHHHHHHT---T--EEEEE----HHHHHHHHH
T ss_pred ccCeEEEEEhhHhHHHHHHHHHHHHHhccC---CcceeEee----cCceecccc
Confidence 457889999999999999999999888752 23455553 344545544
No 416
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=54.09 E-value=17 Score=47.56 Aligned_cols=66 Identities=18% Similarity=0.106 Sum_probs=45.7
Q ss_pred CCHHHHHHHHHHHHhhccCCcEEEEcCCCchHHHHHHHHHHHHHhhcc-CCCcEEEEeCCC-ChHHHHHHHHHH
Q 042857 756 LFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFK-AKLPCLVLVPLS-TMPNWLAEFALW 827 (1404)
Q Consensus 756 L~pyQlegVnwL~~~~~~~~~~ILADEMGLGKTiqaIa~L~~L~~~~~-~~gP~LIVvP~S-ll~nW~rEf~kw 827 (1404)
|.|-|..+|.+ ..+++++....|.|||.+.+.-+.+++...+ ....+|+|+.+. ...+-.+.+.+.
T Consensus 2 Ln~~Q~~av~~------~~~~~~V~Ag~GSGKT~~L~~ri~~ll~~~~~~p~~IL~vTFt~~Aa~em~~Rl~~~ 69 (664)
T TIGR01074 2 LNPQQQEAVEY------VTGPCLVLAGAGSGKTRVITNKIAYLIQNCGYKARNIAAVTFTNKAAREMKERVAKT 69 (664)
T ss_pred CCHHHHHHHhC------CCCCEEEEecCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHH
Confidence 77899998864 2467777779999999999999999986432 333477776543 334444445443
No 417
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=53.07 E-value=46 Score=38.23 Aligned_cols=60 Identities=20% Similarity=0.174 Sum_probs=40.1
Q ss_pred HHHHHHhhccCCcEEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEeCCCChHHHHHHHH
Q 042857 764 LNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLSTMPNWLAEFA 825 (1404)
Q Consensus 764 VnwL~~~~~~~~~~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP~Sll~nW~rEf~ 825 (1404)
++.+..-+..+.-++|+...|.|||..++.++..+.... ..+++++.-.....++.+.+.
T Consensus 20 Ld~~~gG~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~--g~~vl~iS~E~~~~~~~~r~~ 79 (271)
T cd01122 20 LNKLTKGLRKGELIILTAGTGVGKTTFLREYALDLITQH--GVRVGTISLEEPVVRTARRLL 79 (271)
T ss_pred eeeeeEEEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHhc--CceEEEEEcccCHHHHHHHHH
Confidence 333333445577789999999999999998887765431 346788776555555544443
No 418
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=52.93 E-value=2e+02 Score=35.90 Aligned_cols=47 Identities=26% Similarity=0.275 Sum_probs=29.4
Q ss_pred hccCCcEEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEeCCCChHHH
Q 042857 771 WHKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLSTMPNW 820 (1404)
Q Consensus 771 ~~~~~~~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP~Sll~nW 820 (1404)
......+++..|.|+|||..|-++-.. .....+||++|--..+-..|
T Consensus 158 ~~~~~~vli~Ge~GtGK~~lA~~ih~~---s~~~~~~~i~i~c~~~~~~~ 204 (469)
T PRK10923 158 SRSSISVLINGESGTGKELVAHALHRH---SPRAKAPFIALNMAAIPKDL 204 (469)
T ss_pred hccCCeEEEEeCCCCcHHHHHHHHHhc---CCCCCCCeEeeeCCCCCHHH
Confidence 345678999999999999765443221 12345687777554443333
No 419
>PRK10689 transcription-repair coupling factor; Provisional
Probab=52.54 E-value=76 Score=44.43 Aligned_cols=95 Identities=14% Similarity=0.125 Sum_probs=63.1
Q ss_pred hhhHHHHHHHHHHHHHHcCCeEEEEecchhHHHHHHHHHhhhcC--CceEEEEeCCCCHHHHHHHHHHHhcCCCceEEEe
Q 042857 1069 ASAKLTLLHSMLKVLYKEGHRVLIFSQMTKLLDILEDYLNIEFG--PKTYERVDGSVSVGDRQAAITRFNQDKSRFVFLL 1146 (1404)
Q Consensus 1069 ~SgKl~~L~kLL~kl~~~G~KVLIFSq~~~~LDiLed~L~~~f~--g~~y~rLdGs~s~~eRq~~Id~Fn~~~s~~VfLL 1146 (1404)
.+||.......+-.....|.+|+|.++.+....-+...+...|. ++.+..+.|..+..++..++.....+... +|+
T Consensus 631 GsGKT~val~aa~~~~~~g~qvlvLvPT~eLA~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~~d--IVV 708 (1147)
T PRK10689 631 GFGKTEVAMRAAFLAVENHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKID--ILI 708 (1147)
T ss_pred CcCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCCCC--EEE
Confidence 46777655444444456789999999999887777666665443 35677889999999999988887654433 445
Q ss_pred ecc-cccccccccCCCEEEE
Q 042857 1147 STR-SCGLGINLATADTVII 1165 (1404)
Q Consensus 1147 STr-AgG~GINL~~AdtVIi 1165 (1404)
.|. .....+++.....||+
T Consensus 709 gTp~lL~~~v~~~~L~lLVI 728 (1147)
T PRK10689 709 GTHKLLQSDVKWKDLGLLIV 728 (1147)
T ss_pred ECHHHHhCCCCHhhCCEEEE
Confidence 553 3344455555554443
No 420
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=51.87 E-value=19 Score=47.45 Aligned_cols=57 Identities=18% Similarity=0.142 Sum_probs=42.4
Q ss_pred CCCHHHHHHHHHHHHhhccCCcEEEEcCCCchHHHHHHHHHHHHHhhcc-CCCcEEEEeCCCCh
Q 042857 755 ALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFK-AKLPCLVLVPLSTM 817 (1404)
Q Consensus 755 ~L~pyQlegVnwL~~~~~~~~~~ILADEMGLGKTiqaIa~L~~L~~~~~-~~gP~LIVvP~Sll 817 (1404)
.|.|-|.++|.+. .+.+++....|.|||.+.+.-+.+|+...+ ....+|+|+.+.-.
T Consensus 2 ~Ln~~Q~~av~~~------~g~~lV~AgpGSGKT~vL~~Ria~Li~~~~v~p~~IL~lTFT~kA 59 (672)
T PRK10919 2 RLNPGQQQAVEFV------TGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKA 59 (672)
T ss_pred CCCHHHHHHHhCC------CCCEEEEecCCCCHHHHHHHHHHHHHHhcCCCHHHeeeEechHHH
Confidence 4788999998642 456666678999999999999999986533 23457888875433
No 421
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=51.77 E-value=15 Score=49.14 Aligned_cols=110 Identities=22% Similarity=0.264 Sum_probs=71.7
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEeCCCCh-----HHHHHHHHHHCCCCcEEEEecchhHHHHHHH
Q 042857 774 SKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLSTM-----PNWLAEFALWAPNLNVVEYHGCAKARAIIRQ 848 (1404)
Q Consensus 774 ~~~~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP~Sll-----~nW~rEf~kw~P~l~Vvvy~G~~~~R~~ir~ 848 (1404)
..+.++.+..|.|||+.+-..+.......+. +.+.+|+|..-+ ..|..-+. .|+++++-..|....-
T Consensus 943 d~~~~~g~ptgsgkt~~ae~a~~~~~~~~p~-~kvvyIap~kalvker~~Dw~~r~~--~~g~k~ie~tgd~~pd----- 1014 (1230)
T KOG0952|consen 943 DLNFLLGAPTGSGKTVVAELAIFRALSYYPG-SKVVYIAPDKALVKERSDDWSKRDE--LPGIKVIELTGDVTPD----- 1014 (1230)
T ss_pred chhhhhcCCccCcchhHHHHHHHHHhccCCC-ccEEEEcCCchhhcccccchhhhcc--cCCceeEeccCccCCC-----
Confidence 4677889999999999887666665555444 578999997533 55754433 2567777777643211
Q ss_pred hhhccCCCCccccccCCCCceEEEeeHHHHHhhhccccC----CCceEEEEccccccCCC
Q 042857 849 YEWHASDPDNLNKKTSSYKFNVLLTTYEMILADSSHLRG----VPWEVLVVDEGHRLKNS 904 (1404)
Q Consensus 849 ~E~~~~~~~~~~~~~~~~kfdVvITTYe~l~~d~~~L~~----i~w~lVIVDEAHrlKN~ 904 (1404)
.......+++|||++..-......+. ..+..+|+||.|-++..
T Consensus 1015 -------------~~~v~~~~~~ittpek~dgi~Rsw~~r~~v~~v~~iv~de~hllg~~ 1061 (1230)
T KOG0952|consen 1015 -------------VKAVREADIVITTPEKWDGISRSWQTRKYVQSVSLIVLDEIHLLGED 1061 (1230)
T ss_pred -------------hhheecCceEEcccccccCccccccchhhhccccceeecccccccCC
Confidence 11223568999999877543221111 13457999999998653
No 422
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=51.03 E-value=53 Score=42.95 Aligned_cols=51 Identities=16% Similarity=0.210 Sum_probs=31.5
Q ss_pred CCccCCCCCCCHHHHHHHHHHHHhhcc----CCcEEEEcCCCchHHHHHHHHHHH
Q 042857 747 QPEELKGGALFPHQLEALNWLRKCWHK----SKNVILADEMGLGKTVSACAFISS 797 (1404)
Q Consensus 747 qP~~l~g~~L~pyQlegVnwL~~~~~~----~~~~ILADEMGLGKTiqaIa~L~~ 797 (1404)
.|..+......++++.-|..++..... +.-.+|....|.|||..+-.+...
T Consensus 79 rP~~ldel~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~ 133 (637)
T TIGR00602 79 KPETQHELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKE 133 (637)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 455555445667777666543333221 223789999999999877665543
No 423
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=50.87 E-value=22 Score=43.70 Aligned_cols=38 Identities=26% Similarity=0.249 Sum_probs=26.8
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEeCCCCh
Q 042857 774 SKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLSTM 817 (1404)
Q Consensus 774 ~~~~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP~Sll 817 (1404)
..+.+|..+.|+|||..+-++...+ ..+++.+....++
T Consensus 165 p~gvLL~GppGtGKT~lAkaia~~~------~~~~i~v~~~~l~ 202 (389)
T PRK03992 165 PKGVLLYGPPGTGKTLLAKAVAHET------NATFIRVVGSELV 202 (389)
T ss_pred CCceEEECCCCCChHHHHHHHHHHh------CCCEEEeehHHHh
Confidence 4678999999999999888776543 2356655444333
No 424
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=50.58 E-value=27 Score=38.86 Aligned_cols=41 Identities=34% Similarity=0.483 Sum_probs=26.9
Q ss_pred CceEEEEccccccCCCccHHHHHHhhcccccEEEEeccCCCCCh
Q 042857 889 PWEVLVVDEGHRLKNSGSKLFSLLNSFSFQHRVLLTGTPLQNNI 932 (1404)
Q Consensus 889 ~w~lVIVDEAHrlKN~~Sk~~~~L~~l~~~~rLLLTGTPlqNnl 932 (1404)
..+.+||||++.+-. .....+........+.|-|=|.|-..
T Consensus 62 ~~~~liiDE~~~~~~---g~l~~l~~~~~~~~~~l~GDp~Q~~~ 102 (234)
T PF01443_consen 62 SYDTLIIDEAQLLPP---GYLLLLLSLSPAKNVILFGDPLQIPY 102 (234)
T ss_pred cCCEEEEeccccCCh---HHHHHHHhhccCcceEEEECchhccC
Confidence 478999999998742 11222444444456888899988643
No 425
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=50.55 E-value=1.5e+02 Score=36.99 Aligned_cols=55 Identities=15% Similarity=0.137 Sum_probs=31.2
Q ss_pred CceEEEEccccccCCCccHHHHHHhhcc-----cccEEEEeccCCCCChHHHHHHhhhhCC
Q 042857 889 PWEVLVVDEGHRLKNSGSKLFSLLNSFS-----FQHRVLLTGTPLQNNIGEMYNLLNFLQP 944 (1404)
Q Consensus 889 ~w~lVIVDEAHrlKN~~Sk~~~~L~~l~-----~~~rLLLTGTPlqNnl~EL~sLL~fL~P 944 (1404)
.+++++||.+=+..+. ......+..+. ....|.|++|--.+.+.++...+..+..
T Consensus 269 ~~d~VLIDTaGrsqrd-~~~~~~l~~l~~~~~~~~~~LVl~at~~~~~~~~~~~~f~~~~~ 328 (420)
T PRK14721 269 GKHMVLIDTVGMSQRD-QMLAEQIAMLSQCGTQVKHLLLLNATSSGDTLDEVISAYQGHGI 328 (420)
T ss_pred CCCEEEecCCCCCcch-HHHHHHHHHHhccCCCceEEEEEcCCCCHHHHHHHHHHhcCCCC
Confidence 4578889987444332 22333444332 2334679999766767666655554443
No 426
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=50.54 E-value=50 Score=40.31 Aligned_cols=47 Identities=21% Similarity=0.256 Sum_probs=33.5
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEeCCCChHHHHHHHHHH
Q 042857 775 KNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLSTMPNWLAEFALW 827 (1404)
Q Consensus 775 ~~~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP~Sll~nW~rEf~kw 827 (1404)
++++|....|.|||+.|-|+.... ...|.=|.-..+...|.-|-++.
T Consensus 246 kgvLm~GPPGTGKTlLAKAvATEc------~tTFFNVSsstltSKwRGeSEKl 292 (491)
T KOG0738|consen 246 KGVLMVGPPGTGKTLLAKAVATEC------GTTFFNVSSSTLTSKWRGESEKL 292 (491)
T ss_pred ceeeeeCCCCCcHHHHHHHHHHhh------cCeEEEechhhhhhhhccchHHH
Confidence 688999999999999988776532 22344454555558898776654
No 427
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=50.18 E-value=62 Score=40.83 Aligned_cols=46 Identities=24% Similarity=0.333 Sum_probs=29.8
Q ss_pred hhhccccCCCceEEEEccccccCCCccHHHHHHhhcc---cccEEEEeccC
Q 042857 880 ADSSHLRGVPWEVLVVDEGHRLKNSGSKLFSLLNSFS---FQHRVLLTGTP 927 (1404)
Q Consensus 880 ~d~~~L~~i~w~lVIVDEAHrlKN~~Sk~~~~L~~l~---~~~rLLLTGTP 927 (1404)
.+...+......++|+||+|.+++. ..+.++..-. ....++...|+
T Consensus 114 ~~~~~~dG~~~~~~i~DE~h~~~~~--~~~~~l~~g~~~r~~pl~~~ISTa 162 (477)
T PF03354_consen 114 SDADSLDGLNPSLAIFDELHAHKDD--ELYDALESGMGARPNPLIIIISTA 162 (477)
T ss_pred cCCCCccCCCCceEEEeCCCCCCCH--HHHHHHHhhhccCCCceEEEEeCC
Confidence 3556677788899999999999863 3555554432 23345555554
No 428
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=49.80 E-value=33 Score=41.73 Aligned_cols=60 Identities=20% Similarity=0.191 Sum_probs=45.8
Q ss_pred CCCHHHHHHHHHHHHhh--ccCCcEEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEeCCCCh
Q 042857 755 ALFPHQLEALNWLRKCW--HKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLSTM 817 (1404)
Q Consensus 755 ~L~pyQlegVnwL~~~~--~~~~~~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP~Sll 817 (1404)
+|-+-|..++++++..+ ..+.+..|...-|.|||...=+++..+.. ...++++++|+.+-
T Consensus 1 ~Ln~eQ~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~~~i~~~~~~---~~~~~~~~a~tg~A 62 (364)
T PF05970_consen 1 KLNEEQRRVFDTVIEAIENEEGLNFFVTGPAGTGKSFLIKAIIDYLRS---RGKKVLVTAPTGIA 62 (364)
T ss_pred CCCHHHHHHHHHHHHHHHccCCcEEEEEcCCCCChhHHHHHHHHHhcc---ccceEEEecchHHH
Confidence 36788999999987766 45667789999999999987777766543 33468888887654
No 429
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=49.62 E-value=47 Score=41.71 Aligned_cols=63 Identities=10% Similarity=0.101 Sum_probs=43.1
Q ss_pred HHHHHHHHH-hhccCCcEEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEeCCCChHHHHHHHHH
Q 042857 761 LEALNWLRK-CWHKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLSTMPNWLAEFAL 826 (1404)
Q Consensus 761 legVnwL~~-~~~~~~~~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP~Sll~nW~rEf~k 826 (1404)
..+++.++. -+..+.-.+|+.+.|.|||..++.++..+... .+++|.|.......+......+
T Consensus 80 i~~LD~vLgGGi~~GsvilI~G~pGsGKTTL~lq~a~~~a~~---g~kvlYvs~EEs~~qi~~ra~r 143 (454)
T TIGR00416 80 FGELDRVLGGGIVPGSLILIGGDPGIGKSTLLLQVACQLAKN---QMKVLYVSGEESLQQIKMRAIR 143 (454)
T ss_pred cHHHHHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHHhc---CCcEEEEECcCCHHHHHHHHHH
Confidence 445665543 23345557899999999999999888776532 3478888877767666554443
No 430
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=49.54 E-value=23 Score=46.88 Aligned_cols=67 Identities=16% Similarity=0.080 Sum_probs=46.9
Q ss_pred CCCHHHHHHHHHHHHhhccCCcEEEEcCCCchHHHHHHHHHHHHHhhcc-CCCcEEEEeCCCCh-HHHHHHHHHH
Q 042857 755 ALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFK-AKLPCLVLVPLSTM-PNWLAEFALW 827 (1404)
Q Consensus 755 ~L~pyQlegVnwL~~~~~~~~~~ILADEMGLGKTiqaIa~L~~L~~~~~-~~gP~LIVvP~Sll-~nW~rEf~kw 827 (1404)
.|-|-|.++|.+ ..+.+++..-.|.|||.+.+.-+.+|+...+ ....+|+|+.+.-. ......+...
T Consensus 4 ~Ln~~Q~~av~~------~~g~~lV~AgaGSGKT~~L~~Ria~Li~~~~v~p~~IL~lTFTnkAA~em~~Rl~~~ 72 (715)
T TIGR01075 4 GLNDKQREAVAA------PPGNLLVLAGAGSGKTRVLTHRIAWLLSVENASPHSIMAVTFTNKAAAEMRHRIGAL 72 (715)
T ss_pred ccCHHHHHHHcC------CCCCEEEEecCCCCHHHHHHHHHHHHHHcCCCCHHHeEeeeccHHHHHHHHHHHHHH
Confidence 488999999853 2467777779999999999999999986533 23457888775433 3333334443
No 431
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=48.90 E-value=13 Score=47.79 Aligned_cols=80 Identities=16% Similarity=0.242 Sum_probs=47.0
Q ss_pred eEEEEecchhHHHHHHHHHhhhcCCceEEEEeCCCCH--HH---HHHHHHHHhcC--CCceEEEeec--ccccccccccC
Q 042857 1089 RVLIFSQMTKLLDILEDYLNIEFGPKTYERVDGSVSV--GD---RQAAITRFNQD--KSRFVFLLST--RSCGLGINLAT 1159 (1404)
Q Consensus 1089 KVLIFSq~~~~LDiLed~L~~~f~g~~y~rLdGs~s~--~e---Rq~~Id~Fn~~--~s~~VfLLST--rAgG~GINL~~ 1159 (1404)
-||+|...-..|..+..+.... |+ ..+|.|.-+. +. -.++++.|... .+.-.+|++. .-.++|||+..
T Consensus 631 GvV~FfPSy~yL~~v~k~w~~~--gi-l~ri~~kK~vF~E~k~~~~dvl~~Ya~a~~~g~GaiLlaVVGGKlSEGINF~D 707 (821)
T KOG1133|consen 631 GVVCFFPSYAYLGQVRKRWEQN--GI-LARIVGKKKVFYEPKDTVEDVLEGYAEAAERGRGAILLAVVGGKLSEGINFSD 707 (821)
T ss_pred cEEEEeccHHHHHHHHHHHHhc--ch-HHHhhccchhhccCcccHHHHHHHHHHHhhcCCCeEEEEEecccccccccccc
Confidence 4888888888787777777643 21 2233332110 00 23456666531 1222455554 34479999976
Q ss_pred --CCEEEEEcCCCC
Q 042857 1160 --ADTVIIYDSDFN 1171 (1404)
Q Consensus 1160 --AdtVIi~DsdWN 1171 (1404)
+..||....|+-
T Consensus 708 ~LgRaVvvVGlPyP 721 (821)
T KOG1133|consen 708 DLGRAVVVVGLPYP 721 (821)
T ss_pred ccccEEEEeecCCC
Confidence 888998888874
No 432
>PF14061 Mtf2_C: Polycomb-like MTF2 factor 2
Probab=48.87 E-value=7.3 Score=33.53 Aligned_cols=26 Identities=31% Similarity=0.627 Sum_probs=21.8
Q ss_pred chhhhhhhccCCCCcceeeeccCCCC
Q 042857 663 QPQRVISLRSSKDGTREAFVKWTGLP 688 (1404)
Q Consensus 663 ~~eRii~~r~~~~~~~eylVKW~gL~ 688 (1404)
..-+|+|.|..++|..+|||-|.|.+
T Consensus 24 E~~~VlArRV~~dG~vQYLvEWeg~~ 49 (50)
T PF14061_consen 24 EKYRVLARRVTPDGKVQYLVEWEGAT 49 (50)
T ss_pred CeeEEEEEEEcCCCcEEEEEEecCcC
Confidence 44578899999999999999998764
No 433
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=48.59 E-value=37 Score=45.18 Aligned_cols=35 Identities=26% Similarity=0.208 Sum_probs=24.2
Q ss_pred cCCcEEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEeC
Q 042857 773 KSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVP 813 (1404)
Q Consensus 773 ~~~~~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP 813 (1404)
.+.+.+|..+.|+|||..+-++...+ ..+++.|-.
T Consensus 211 ~~~giLL~GppGtGKT~laraia~~~------~~~~i~i~~ 245 (733)
T TIGR01243 211 PPKGVLLYGPPGTGKTLLAKAVANEA------GAYFISING 245 (733)
T ss_pred CCceEEEECCCCCChHHHHHHHHHHh------CCeEEEEec
Confidence 35788999999999998776655433 235555544
No 434
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=48.40 E-value=76 Score=39.28 Aligned_cols=27 Identities=19% Similarity=0.185 Sum_probs=19.8
Q ss_pred ccCCcEEEEcCCCchHHHHHHHHHHHH
Q 042857 772 HKSKNVILADEMGLGKTVSACAFISSL 798 (1404)
Q Consensus 772 ~~~~~~ILADEMGLGKTiqaIa~L~~L 798 (1404)
..|..+.|..+.|.|||..+..+...+
T Consensus 166 g~Gq~~~IvG~~g~GKTtL~~~i~~~I 192 (415)
T TIGR00767 166 GKGQRGLIVAPPKAGKTVLLQKIAQAI 192 (415)
T ss_pred CCCCEEEEECCCCCChhHHHHHHHHhh
Confidence 356778888899999997665544443
No 435
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=48.34 E-value=35 Score=45.44 Aligned_cols=41 Identities=24% Similarity=0.326 Sum_probs=29.9
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEeCCCChHHH
Q 042857 774 SKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLSTMPNW 820 (1404)
Q Consensus 774 ~~~~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP~Sll~nW 820 (1404)
..+.+|....|+|||..+-++...+ ..+|+.|-+..++..|
T Consensus 487 ~~giLL~GppGtGKT~lakalA~e~------~~~fi~v~~~~l~~~~ 527 (733)
T TIGR01243 487 PKGVLLFGPPGTGKTLLAKAVATES------GANFIAVRGPEILSKW 527 (733)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhc------CCCEEEEehHHHhhcc
Confidence 4678999999999999887776543 2467777766555544
No 436
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=47.77 E-value=80 Score=37.94 Aligned_cols=54 Identities=11% Similarity=-0.005 Sum_probs=37.7
Q ss_pred HHHHHHH--hhccCCcEEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEeCCCChHH
Q 042857 763 ALNWLRK--CWHKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLSTMPN 819 (1404)
Q Consensus 763 gVnwL~~--~~~~~~~~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP~Sll~n 819 (1404)
+++.++. -|..+.-..|+.+.|.|||..++.++...... .+++++|-....+..
T Consensus 42 ~LD~~Lg~GGlp~G~iteI~G~~GsGKTtLaL~~~~~~~~~---g~~v~yId~E~~~~~ 97 (321)
T TIGR02012 42 SLDLALGVGGLPRGRIIEIYGPESSGKTTLALHAIAEAQKA---GGTAAFIDAEHALDP 97 (321)
T ss_pred HHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHHHHc---CCcEEEEcccchhHH
Confidence 4554443 34455567799999999999999988877543 457777776665543
No 437
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=47.76 E-value=2.4e+02 Score=34.91 Aligned_cols=55 Identities=20% Similarity=0.110 Sum_probs=34.5
Q ss_pred HHHHHHHhhccCCcEEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEeCCCChHHH
Q 042857 763 ALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLSTMPNW 820 (1404)
Q Consensus 763 gVnwL~~~~~~~~~~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP~Sll~nW 820 (1404)
.+..+..........++..|+|.||+..+-++... .....+|++.|--..+-..|
T Consensus 155 ~~~~~~~~a~~~~~vli~Ge~GtGK~~lA~~ih~~---s~~~~~~~~~i~c~~~~~~~ 209 (457)
T PRK11361 155 ICKDTAKIALSQASVLISGESGTGKELIARAIHYN---SRRAKGPFIKVNCAALPESL 209 (457)
T ss_pred HHHHHHHHcCCCcEEEEEcCCCccHHHHHHHHHHh---CCCCCCCeEEEECCCCCHHH
Confidence 34444444445678899999999999887655332 22345687766655554444
No 438
>PRK08760 replicative DNA helicase; Provisional
Probab=47.60 E-value=41 Score=42.47 Aligned_cols=66 Identities=14% Similarity=0.065 Sum_probs=49.3
Q ss_pred HHHHHHHHHhhccCCcEEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEeCCCChHHHHHHHHHHC
Q 042857 761 LEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLSTMPNWLAEFALWA 828 (1404)
Q Consensus 761 legVnwL~~~~~~~~~~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP~Sll~nW~rEf~kw~ 828 (1404)
...++-+..-|..+.=.|||...|.|||.-++.++...... ...|++++.......+|...+....
T Consensus 216 ~~~LD~~t~G~~~G~LivIaarPg~GKTafal~iA~~~a~~--~g~~V~~fSlEMs~~ql~~Rl~a~~ 281 (476)
T PRK08760 216 YNDFDAMTAGLQPTDLIILAARPAMGKTTFALNIAEYAAIK--SKKGVAVFSMEMSASQLAMRLISSN 281 (476)
T ss_pred cHHHHHHhcCCCCCceEEEEeCCCCChhHHHHHHHHHHHHh--cCCceEEEeccCCHHHHHHHHHHhh
Confidence 34555566566667778999999999999999888766432 2347899988888888887766543
No 439
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=47.11 E-value=1.5e+02 Score=35.62 Aligned_cols=34 Identities=15% Similarity=0.224 Sum_probs=23.7
Q ss_pred cEEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEe
Q 042857 776 NVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLV 812 (1404)
Q Consensus 776 ~~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVv 812 (1404)
-..|....|.|||.++..+...+... .+.++|+.
T Consensus 116 vi~lvGpnGsGKTTt~~kLA~~l~~~---g~~V~Li~ 149 (318)
T PRK10416 116 VILVVGVNGVGKTTTIGKLAHKYKAQ---GKKVLLAA 149 (318)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHhc---CCeEEEEe
Confidence 34577799999999888877766532 34566654
No 440
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=46.83 E-value=1.6e+02 Score=35.68 Aligned_cols=40 Identities=20% Similarity=0.264 Sum_probs=27.5
Q ss_pred HHHHHHHHHHhhccC---CcEEEEcCCCchHHHHHHHHHHHHH
Q 042857 760 QLEALNWLRKCWHKS---KNVILADEMGLGKTVSACAFISSLY 799 (1404)
Q Consensus 760 QlegVnwL~~~~~~~---~~~ILADEMGLGKTiqaIa~L~~L~ 799 (1404)
|...+..+...+..+ ...++..+.|.|||..+-++...+.
T Consensus 22 ~~~~~~~l~~~i~~~~~~~~~L~~G~~G~GKt~~a~~la~~l~ 64 (367)
T PRK14970 22 QSHITNTLLNAIENNHLAQALLFCGPRGVGKTTCARILARKIN 64 (367)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 344455555544444 3578999999999988888866654
No 441
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=46.65 E-value=1.8e+02 Score=32.77 Aligned_cols=37 Identities=24% Similarity=0.427 Sum_probs=25.9
Q ss_pred CceEEEEccccccCCCc---cHHHHHHhhcc-cccEEEEec
Q 042857 889 PWEVLVVDEGHRLKNSG---SKLFSLLNSFS-FQHRVLLTG 925 (1404)
Q Consensus 889 ~w~lVIVDEAHrlKN~~---Sk~~~~L~~l~-~~~rLLLTG 925 (1404)
..++||||..|.+.+.. ..++..+..+. ...++++|+
T Consensus 97 ~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts 137 (219)
T PF00308_consen 97 SADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTS 137 (219)
T ss_dssp TSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEE
T ss_pred cCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEe
Confidence 46899999999998753 24555555553 445777777
No 442
>PF15446 zf-PHD-like: PHD/FYVE-zinc-finger like domain
Probab=46.47 E-value=27 Score=37.78 Aligned_cols=20 Identities=45% Similarity=1.034 Sum_probs=16.4
Q ss_pred eEEcCCCCCcccccccCCCC
Q 042857 87 LLCCDSCPRTYHLQCLDPPL 106 (1404)
Q Consensus 87 ll~Cd~C~~~~H~~Cl~Ppl 106 (1404)
|.-|..|.|+||+..|-|+-
T Consensus 124 LFRC~~C~RawH~~HLP~~~ 143 (175)
T PF15446_consen 124 LFRCTSCHRAWHFEHLPPPS 143 (175)
T ss_pred EEecCCccceeehhhCCCCc
Confidence 55599999999998887653
No 443
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=46.34 E-value=1.1e+02 Score=36.84 Aligned_cols=124 Identities=19% Similarity=0.293 Sum_probs=65.0
Q ss_pred EEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEeCCCChHHHHHHHHHHCCCCcEEEEecchhHHHHHHHhhhccCCCC
Q 042857 778 ILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLSTMPNWLAEFALWAPNLNVVEYHGCAKARAIIRQYEWHASDPD 857 (1404)
Q Consensus 778 ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP~Sll~nW~rEf~kw~P~l~Vvvy~G~~~~R~~ir~~E~~~~~~~ 857 (1404)
++..--|.|||-+..-+..++. .. ..++|+.+--.-..-=..+++.|.-.+.+-+..+..
T Consensus 143 l~vGVNG~GKTTTIaKLA~~l~-~~--g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~~~----------------- 202 (340)
T COG0552 143 LFVGVNGVGKTTTIAKLAKYLK-QQ--GKSVLLAAGDTFRAAAIEQLEVWGERLGVPVISGKE----------------- 202 (340)
T ss_pred EEEecCCCchHhHHHHHHHHHH-HC--CCeEEEEecchHHHHHHHHHHHHHHHhCCeEEccCC-----------------
Confidence 4566779999976555554443 22 234555554444455566777786444333332210
Q ss_pred ccccccCCCCceEEEeeHHHHHhhhccccCCCceEEEEccccccCCCcc------HHHHHHhhc--ccccEEEE--eccC
Q 042857 858 NLNKKTSSYKFNVLLTTYEMILADSSHLRGVPWEVLVVDEGHRLKNSGS------KLFSLLNSF--SFQHRVLL--TGTP 927 (1404)
Q Consensus 858 ~~~~~~~~~kfdVvITTYe~l~~d~~~L~~i~w~lVIVDEAHrlKN~~S------k~~~~L~~l--~~~~rLLL--TGTP 927 (1404)
.-|---.-|+.+.. -..-.+++|++|=|-||-|... ++.+.+... .++|.++| -||-
T Consensus 203 ---------G~DpAaVafDAi~~----Akar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAtt 269 (340)
T COG0552 203 ---------GADPAAVAFDAIQA----AKARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATT 269 (340)
T ss_pred ---------CCCcHHHHHHHHHH----HHHcCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEEccc
Confidence 00000012333322 2335688999999999987542 222222222 24555554 4887
Q ss_pred CCCChHH
Q 042857 928 LQNNIGE 934 (1404)
Q Consensus 928 lqNnl~E 934 (1404)
=||.+..
T Consensus 270 Gqnal~Q 276 (340)
T COG0552 270 GQNALSQ 276 (340)
T ss_pred ChhHHHH
Confidence 7776653
No 444
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=46.28 E-value=38 Score=41.74 Aligned_cols=28 Identities=21% Similarity=0.178 Sum_probs=19.9
Q ss_pred ccCCcEEEEcCCCchHHHHHHHHHHHHH
Q 042857 772 HKSKNVILADEMGLGKTVSACAFISSLY 799 (1404)
Q Consensus 772 ~~~~~~ILADEMGLGKTiqaIa~L~~L~ 799 (1404)
-.|..++|..+-|.|||..+-.+...+.
T Consensus 167 GkGQR~lIvgppGvGKTTLaK~Ian~I~ 194 (416)
T PRK09376 167 GKGQRGLIVAPPKAGKTVLLQNIANSIT 194 (416)
T ss_pred ccCceEEEeCCCCCChhHHHHHHHHHHH
Confidence 3467777778999999976666554443
No 445
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=45.60 E-value=28 Score=42.94 Aligned_cols=38 Identities=24% Similarity=0.206 Sum_probs=27.0
Q ss_pred cCCcEEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEeCCCC
Q 042857 773 KSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLST 816 (1404)
Q Consensus 773 ~~~~~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP~Sl 816 (1404)
...+++|..+.|.|||..+-+++..+ ..+++.+.+..+
T Consensus 178 ~pkgvLL~GppGTGKT~LAkalA~~l------~~~fi~i~~s~l 215 (398)
T PTZ00454 178 PPRGVLLYGPPGTGKTMLAKAVAHHT------TATFIRVVGSEF 215 (398)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhc------CCCEEEEehHHH
Confidence 35789999999999999887766543 235666655433
No 446
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=45.58 E-value=2.2e+02 Score=35.60 Aligned_cols=34 Identities=12% Similarity=0.176 Sum_probs=23.4
Q ss_pred EEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEeC
Q 042857 777 VILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVP 813 (1404)
Q Consensus 777 ~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP 813 (1404)
..|+.-.|.|||.++..+..++... . .++++|+-
T Consensus 103 i~lvG~~GvGKTTtaaKLA~~l~~~--G-~kV~lV~~ 136 (429)
T TIGR01425 103 IMFVGLQGSGKTTTCTKLAYYYQRK--G-FKPCLVCA 136 (429)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHC--C-CCEEEEcC
Confidence 4588899999999888887766532 2 24555543
No 447
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=45.50 E-value=42 Score=42.64 Aligned_cols=43 Identities=23% Similarity=0.341 Sum_probs=30.2
Q ss_pred HHHHHHHHHHhhccC---CcEEEEcCCCchHHHHHHHHHHHHHhhc
Q 042857 760 QLEALNWLRKCWHKS---KNVILADEMGLGKTVSACAFISSLYCEF 802 (1404)
Q Consensus 760 QlegVnwL~~~~~~~---~~~ILADEMGLGKTiqaIa~L~~L~~~~ 802 (1404)
|...+..|...+..+ ..-++...-|+|||-.+=.|+..+-+..
T Consensus 21 Qe~v~~~L~nal~~~ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~ 66 (515)
T COG2812 21 QEHVVKTLSNALENGRIAHAYLFSGPRGVGKTTIARILAKALNCEN 66 (515)
T ss_pred cHHHHHHHHHHHHhCcchhhhhhcCCCCcCchhHHHHHHHHhcCCC
Confidence 455555565555554 3457888999999998888887776554
No 448
>PF12846 AAA_10: AAA-like domain
Probab=45.47 E-value=58 Score=37.31 Aligned_cols=47 Identities=13% Similarity=0.158 Sum_probs=32.2
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEeCCCChHHHHHH
Q 042857 774 SKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLSTMPNWLAE 823 (1404)
Q Consensus 774 ~~~~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP~Sll~nW~rE 823 (1404)
+.++++...+|.|||..+..++..+...+ .+++|+=|..-...|.+.
T Consensus 1 n~h~~i~G~tGsGKT~~~~~l~~~~~~~g---~~~~i~D~~g~~~~~~~~ 47 (304)
T PF12846_consen 1 NPHTLILGKTGSGKTTLLKNLLEQLIRRG---PRVVIFDPKGDYSPLARA 47 (304)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHcC---CCEEEEcCCchHHHHHHh
Confidence 35788999999999988887776665432 456777666544444333
No 449
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=45.37 E-value=1e+02 Score=45.70 Aligned_cols=62 Identities=21% Similarity=0.243 Sum_probs=41.2
Q ss_pred CCCCHHHHHHHHHHHHhhccCCcEEEEcCCCchHHHHHHHHHHHHHhhcc-CCCcEEEEeCCCCh
Q 042857 754 GALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFK-AKLPCLVLVPLSTM 817 (1404)
Q Consensus 754 ~~L~pyQlegVnwL~~~~~~~~~~ILADEMGLGKTiqaIa~L~~L~~~~~-~~gP~LIVvP~Sll 817 (1404)
..|.+-|.+++..++. ..++-++|...-|.|||.+..+++..+..... ....++.++|....
T Consensus 1018 ~~Lt~~Q~~Ai~~il~--~~~~~~~i~G~AGtGKTt~l~~~~~~i~~~~~~~g~~v~glApT~~A 1080 (1960)
T TIGR02760 1018 ERLTHGQKQAIHLIIS--TKDRFVAVQGLAGVGKTTMLESRYKPVLQAFESEQLQVIGLAPTHEA 1080 (1960)
T ss_pred CCCCHHHHHHHHHHHh--CCCcEEEEEeCCCCCHHHhHHHHHHHHHHHHHhcCCeEEEEeChHHH
Confidence 4699999999987755 23456678899999999887554433322222 23357777886543
No 450
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=45.19 E-value=34 Score=43.76 Aligned_cols=50 Identities=26% Similarity=0.369 Sum_probs=37.4
Q ss_pred ccCCcEEEEcCCCchHHHHHHHHHHHHHhhc---cCCCcEEEEeCCCChHHHH
Q 042857 772 HKSKNVILADEMGLGKTVSACAFISSLYCEF---KAKLPCLVLVPLSTMPNWL 821 (1404)
Q Consensus 772 ~~~~~~ILADEMGLGKTiqaIa~L~~L~~~~---~~~gP~LIVvP~Sll~nW~ 821 (1404)
..+.-.|+....|.|||..|+-=+++|+..+ ...+|+||+.|+.++..+.
T Consensus 224 ek~~ilVVQGaAGSGKTtiALHRvAyLlY~~R~~l~~k~vlvl~PN~vFleYi 276 (747)
T COG3973 224 EKNKILVVQGAAGSGKTTIALHRVAYLLYGYRGPLQAKPVLVLGPNRVFLEYI 276 (747)
T ss_pred cCCCeEEEecCCCCCchhHHHHHHHHHHhccccccccCceEEEcCcHHHHHHH
Confidence 3455667888999999999986666665443 3567899999998876553
No 451
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=45.15 E-value=49 Score=38.94 Aligned_cols=24 Identities=38% Similarity=0.462 Sum_probs=18.1
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHH
Q 042857 775 KNVILADEMGLGKTVSACAFISSL 798 (1404)
Q Consensus 775 ~~~ILADEMGLGKTiqaIa~L~~L 798 (1404)
.+++|....|||||-.|--+...+
T Consensus 53 DHvLl~GPPGlGKTTLA~IIA~Em 76 (332)
T COG2255 53 DHVLLFGPPGLGKTTLAHIIANEL 76 (332)
T ss_pred CeEEeeCCCCCcHHHHHHHHHHHh
Confidence 568999999999997665544433
No 452
>KOG1081 consensus Transcription factor NSD1 and related SET domain proteins [Transcription]
Probab=45.03 E-value=16 Score=45.93 Aligned_cols=47 Identities=26% Similarity=0.518 Sum_probs=34.8
Q ss_pred ccccccccccCCCceEEcCCCCCcccccccCCCCCCCCCCCccCcccccc
Q 042857 73 GYYYECVICDLGGNLLCCDSCPRTYHLQCLDPPLKRIPNGKWQCPKCTQK 122 (1404)
Q Consensus 73 ~~~~~C~~C~~~g~ll~Cd~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~ 122 (1404)
-...+|.+|..||.+++|+.|...+|-.|.. ...|.+.|.|..|...
T Consensus 87 ~~~~~c~vc~~ggs~v~~~s~~~~~~r~c~~---~~~~~c~~~~~d~~~~ 133 (463)
T KOG1081|consen 87 IEPSECFVCFKGGSLVTCKSRIQAPHRKCKP---AQLEKCSKRCTDCRAF 133 (463)
T ss_pred CCcchhccccCCCccceeccccccccccCcC---ccCcccccCCcceeee
Confidence 3445799999999999999777777777764 4456666776666543
No 453
>PRK13766 Hef nuclease; Provisional
Probab=45.00 E-value=5.3e+02 Score=34.62 Aligned_cols=95 Identities=17% Similarity=0.226 Sum_probs=58.5
Q ss_pred hhhHHHHHHHHHHH-HHHcCCeEEEEecchhHHHHHHHHHhhhcC--CceEEEEeCCCCHHHHHHHHHHHhcCCCceEEE
Q 042857 1069 ASAKLTLLHSMLKV-LYKEGHRVLIFSQMTKLLDILEDYLNIEFG--PKTYERVDGSVSVGDRQAAITRFNQDKSRFVFL 1145 (1404)
Q Consensus 1069 ~SgKl~~L~kLL~k-l~~~G~KVLIFSq~~~~LDiLed~L~~~f~--g~~y~rLdGs~s~~eRq~~Id~Fn~~~s~~VfL 1145 (1404)
.+||.....-++.. +...+.++||.++.....+....++...++ +..+..++|.++..+|.++... ..+++
T Consensus 39 G~GKT~~a~~~i~~~l~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~r~~~~~~------~~iiv 112 (773)
T PRK13766 39 GLGKTAIALLVIAERLHKKGGKVLILAPTKPLVEQHAEFFRKFLNIPEEKIVVFTGEVSPEKRAELWEK------AKVIV 112 (773)
T ss_pred CccHHHHHHHHHHHHHHhCCCeEEEEeCcHHHHHHHHHHHHHHhCCCCceEEEEeCCCCHHHHHHHHhC------CCEEE
Confidence 47888644433333 334678999999998777666666654332 2477889999998888665432 12444
Q ss_pred eecccc-----cccccccCCCEEEEEcCC
Q 042857 1146 LSTRSC-----GLGINLATADTVIIYDSD 1169 (1404)
Q Consensus 1146 LSTrAg-----G~GINL~~AdtVIi~Dsd 1169 (1404)
.+.... ..-+++...+.||+-+..
T Consensus 113 ~T~~~l~~~l~~~~~~~~~~~liVvDEaH 141 (773)
T PRK13766 113 ATPQVIENDLIAGRISLEDVSLLIFDEAH 141 (773)
T ss_pred ECHHHHHHHHHcCCCChhhCcEEEEECCc
Confidence 444333 223456667777766554
No 454
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=44.81 E-value=2.7 Score=34.94 Aligned_cols=39 Identities=36% Similarity=0.774 Sum_probs=27.1
Q ss_pred ccccccCC---Cc-eEEcCCCCCcccccccCCCCCCCCCCCccCcccc
Q 042857 77 ECVICDLG---GN-LLCCDSCPRTYHLQCLDPPLKRIPNGKWQCPKCT 120 (1404)
Q Consensus 77 ~C~~C~~~---g~-ll~Cd~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~ 120 (1404)
.|.+|... ++ ++... |.-.||..|+...+..- -.||.|+
T Consensus 2 ~C~IC~~~~~~~~~~~~l~-C~H~fh~~Ci~~~~~~~----~~CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEFEDGEKVVKLP-CGHVFHRSCIKEWLKRN----NSCPVCR 44 (44)
T ss_dssp CETTTTCBHHTTSCEEEET-TSEEEEHHHHHHHHHHS----SB-TTTH
T ss_pred CCcCCChhhcCCCeEEEcc-CCCeeCHHHHHHHHHhC----CcCCccC
Confidence 47888763 33 44444 99999999999876552 3899985
No 455
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=44.69 E-value=51 Score=39.59 Aligned_cols=45 Identities=20% Similarity=0.240 Sum_probs=32.9
Q ss_pred CCCCCCHHHHHHHHHHHHhhccCCcEEEEcCCCchHHHHHHHHHHHHH
Q 042857 752 KGGALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLY 799 (1404)
Q Consensus 752 ~g~~L~pyQlegVnwL~~~~~~~~~~ILADEMGLGKTiqaIa~L~~L~ 799 (1404)
..+.+.+.|.+-+..+ ...+.+.|++..+|.|||-..-+++..+.
T Consensus 125 ~~g~~~~~~~~~L~~~---v~~~~nilI~G~tGSGKTTll~aL~~~i~ 169 (323)
T PRK13833 125 TSKIMTEAQASVIRSA---IDSRLNIVISGGTGSGKTTLANAVIAEIV 169 (323)
T ss_pred HcCCCCHHHHHHHHHH---HHcCCeEEEECCCCCCHHHHHHHHHHHHh
Confidence 3456777777655444 44678899999999999988777666553
No 456
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=44.37 E-value=1.7e+02 Score=43.45 Aligned_cols=62 Identities=19% Similarity=0.112 Sum_probs=44.8
Q ss_pred CCCCCCHHHHHHHHHHHHhhccCCcEEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEeCCCChH
Q 042857 752 KGGALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLSTMP 818 (1404)
Q Consensus 752 ~g~~L~pyQlegVnwL~~~~~~~~~~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP~Sll~ 818 (1404)
.+..|-+-|.+++..++. ....-.||...-|.|||..+-+++..+. . ....+++++|...-.
T Consensus 426 ~~~~Ls~~Q~~Av~~il~--s~~~v~ii~G~aGTGKTt~l~~l~~~~~-~--~G~~V~~lAPTgrAA 487 (1960)
T TIGR02760 426 SEFALSPSNKDAVSTLFT--STKRFIIINGFGGTGSTEIAQLLLHLAS-E--QGYEIQIITAGSLSA 487 (1960)
T ss_pred ccCCCCHHHHHHHHHHHh--CCCCeEEEEECCCCCHHHHHHHHHHHHH-h--cCCeEEEEeCCHHHH
Confidence 345799999999987765 2345678888999999987666655443 2 234788999987553
No 457
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=44.31 E-value=4.9e+02 Score=32.24 Aligned_cols=144 Identities=15% Similarity=0.104 Sum_probs=77.9
Q ss_pred CCCHHHHHHHHHHHHhhccC--CcEEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEeCCCChHHHHHHHHHHCCCCc
Q 042857 755 ALFPHQLEALNWLRKCWHKS--KNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLSTMPNWLAEFALWAPNLN 832 (1404)
Q Consensus 755 ~L~pyQlegVnwL~~~~~~~--~~~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP~Sll~nW~rEf~kw~P~l~ 832 (1404)
..|.+|...+.-|+..-... ...+|....|.|||..+-.++..+ ..|+..+++... ..|.-=+++..-++.
T Consensus 9 ~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~------n~~~vw~n~~ec-ft~~~lle~IL~~~~ 81 (438)
T KOG2543|consen 9 PCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKL------NLENVWLNCVEC-FTYAILLEKILNKSQ 81 (438)
T ss_pred cchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhc------CCcceeeehHHh-ccHHHHHHHHHHHhc
Confidence 46889999887776532221 123899999999999888877654 346777776432 334333333321221
Q ss_pred EEEEecchhHH--HHHHHhhhccCCCCccccccCCCCceEEEeeHHHHHhhhccccCCCceEEEEccccccCCCccHHHH
Q 042857 833 VVEYHGCAKAR--AIIRQYEWHASDPDNLNKKTSSYKFNVLLTTYEMILADSSHLRGVPWEVLVVDEGHRLKNSGSKLFS 910 (1404)
Q Consensus 833 Vvvy~G~~~~R--~~ir~~E~~~~~~~~~~~~~~~~kfdVvITTYe~l~~d~~~L~~i~w~lVIVDEAHrlKN~~Sk~~~ 910 (1404)
...+.|....- ..+. .|.-++..|+...+ .-.--++|+|-|+.++..++.+.+
T Consensus 82 ~~d~dg~~~~~~~en~~-------------------d~i~~l~q~~~~t~------~d~~~~liLDnad~lrD~~a~ll~ 136 (438)
T KOG2543|consen 82 LADKDGDKVEGDAENFS-------------------DFIYLLVQWPAATN------RDQKVFLILDNADALRDMDAILLQ 136 (438)
T ss_pred cCCCchhhhhhHHHHHH-------------------HHHHHHHhhHHhhc------cCceEEEEEcCHHhhhccchHHHH
Confidence 12222221111 0000 01001111111111 112347999999999988888777
Q ss_pred HHhhcc-----cccEEEEeccCCCC
Q 042857 911 LLNSFS-----FQHRVLLTGTPLQN 930 (1404)
Q Consensus 911 ~L~~l~-----~~~rLLLTGTPlqN 930 (1404)
.+.++. ..-+++++.++..+
T Consensus 137 ~l~~L~el~~~~~i~iils~~~~e~ 161 (438)
T KOG2543|consen 137 CLFRLYELLNEPTIVIILSAPSCEK 161 (438)
T ss_pred HHHHHHHHhCCCceEEEEeccccHH
Confidence 776663 34567788877543
No 458
>PRK05728 DNA polymerase III subunit chi; Validated
Probab=43.97 E-value=42 Score=35.43 Aligned_cols=41 Identities=24% Similarity=0.270 Sum_probs=37.1
Q ss_pred hhhHHHHHHHHHHHHHHcCCeEEEEecchhHHHHHHHHHhh
Q 042857 1069 ASAKLTLLHSMLKVLYKEGHRVLIFSQMTKLLDILEDYLNI 1109 (1404)
Q Consensus 1069 ~SgKl~~L~kLL~kl~~~G~KVLIFSq~~~~LDiLed~L~~ 1109 (1404)
...++.++.+|+.+....|+||+|++.-...++.|.++|=.
T Consensus 11 ~~~~~~~~c~L~~ka~~~g~rv~I~~~d~~~a~~lD~~LW~ 51 (142)
T PRK05728 11 LSALEALLCELAEKALRAGWRVLVQCEDEEQAEALDEALWT 51 (142)
T ss_pred chhHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhcC
Confidence 45688999999999999999999999999999999999953
No 459
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=43.50 E-value=51 Score=36.83 Aligned_cols=54 Identities=19% Similarity=0.192 Sum_probs=40.3
Q ss_pred cCCcEEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEeCCCChHHHHHHHHHHC
Q 042857 773 KSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLSTMPNWLAEFALWA 828 (1404)
Q Consensus 773 ~~~~~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP~Sll~nW~rEf~kw~ 828 (1404)
.+.-.+|+.+.|.|||+.++.|+....... ..+++.|.-.....++.+.+..+.
T Consensus 18 ~gs~~li~G~~GsGKT~l~~q~l~~~~~~~--ge~vlyvs~ee~~~~l~~~~~s~g 71 (226)
T PF06745_consen 18 KGSVVLISGPPGSGKTTLALQFLYNGLKNF--GEKVLYVSFEEPPEELIENMKSFG 71 (226)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHHH--T--EEEEESSS-HHHHHHHHHTTT
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHhhhhc--CCcEEEEEecCCHHHHHHHHHHcC
Confidence 355678999999999999999998765442 236888888878888888887664
No 460
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=43.47 E-value=57 Score=37.49 Aligned_cols=53 Identities=21% Similarity=0.224 Sum_probs=39.8
Q ss_pred ccCCcEEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEeCCCChHHHHHHHHHH
Q 042857 772 HKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLSTMPNWLAEFALW 827 (1404)
Q Consensus 772 ~~~~~~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP~Sll~nW~rEf~kw 827 (1404)
..+...++..++|.|||+-++-|+...... ..|+|.|.-...-..-.+.+..+
T Consensus 21 p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~---ge~vlyvs~~e~~~~l~~~~~~~ 73 (260)
T COG0467 21 PRGSVVLITGPPGTGKTIFALQFLYEGARE---GEPVLYVSTEESPEELLENARSF 73 (260)
T ss_pred cCCcEEEEEcCCCCcHHHHHHHHHHHHHhc---CCcEEEEEecCCHHHHHHHHHHc
Confidence 456778999999999999999999887754 45788888766555554554443
No 461
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=43.07 E-value=39 Score=43.74 Aligned_cols=45 Identities=18% Similarity=0.149 Sum_probs=39.3
Q ss_pred CCCCHHHHHHHHHHHHhhccCCcEEEEcCCCchHHHHHHHHHHHH
Q 042857 754 GALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSL 798 (1404)
Q Consensus 754 ~~L~pyQlegVnwL~~~~~~~~~~ILADEMGLGKTiqaIa~L~~L 798 (1404)
.++|+-|++-++-|++.+..|+=+|+-..+|+|||+..|......
T Consensus 14 y~PYdIQ~~lM~elyrvLe~GkIgIfESPTGTGKSLSLiCaaltW 58 (821)
T KOG1133|consen 14 YTPYDIQEDLMRELYRVLEEGKIGIFESPTGTGKSLSLICAALTW 58 (821)
T ss_pred CCchhHHHHHHHHHHHHHhcCCeeeeeCCCCCCchHHHHHHHHHH
Confidence 478999999999999999999999999999999999877554443
No 462
>KOG1632 consensus Uncharacterized PHD Zn-finger protein [General function prediction only]
Probab=42.86 E-value=18 Score=43.75 Aligned_cols=48 Identities=27% Similarity=0.622 Sum_probs=37.4
Q ss_pred ccCCCceEEcCCCCCcccccc--cCCCCCCCCC-CCccCccccccccccCC
Q 042857 81 CDLGGNLLCCDSCPRTYHLQC--LDPPLKRIPN-GKWQCPKCTQKNDQLKP 128 (1404)
Q Consensus 81 C~~~g~ll~Cd~C~~~~H~~C--l~Ppl~~~P~-g~W~C~~C~~~~~~~~~ 128 (1404)
|...+.++.|+.|..+||..| ++.+-...|. ..|+|..|......+..
T Consensus 69 ~~p~~~~~~cd~C~~~~~~ec~~v~~~~~e~p~~~~~~c~~c~~~~~~~~~ 119 (345)
T KOG1632|consen 69 CDPDDLMEQCDLCEDWYHGECWEVGTAEKEAPKEDPKVCDECKEAQDGMSE 119 (345)
T ss_pred cCchhhhhccccccccccccccccCchhhcCCccccccccccchhhhhhhh
Confidence 333336899999999999999 9988777774 67999999977654443
No 463
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=42.82 E-value=1.2e+02 Score=37.45 Aligned_cols=46 Identities=13% Similarity=0.156 Sum_probs=29.0
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEeCC--C--ChHHHHH
Q 042857 774 SKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPL--S--TMPNWLA 822 (1404)
Q Consensus 774 ~~~~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP~--S--ll~nW~r 822 (1404)
+...+|+...|.|||.++..+...+... ..++.+|+-- . .+.||..
T Consensus 206 ~~ii~lvGptGvGKTTt~akLA~~l~~~---g~~V~lItaDtyR~gAveQLk~ 255 (407)
T PRK12726 206 HRIISLIGQTGVGKTTTLVKLGWQLLKQ---NRTVGFITTDTFRSGAVEQFQG 255 (407)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHc---CCeEEEEeCCccCccHHHHHHH
Confidence 3445688899999999888887766433 2345555432 2 2556644
No 464
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=42.79 E-value=2.1e+02 Score=33.45 Aligned_cols=49 Identities=16% Similarity=0.268 Sum_probs=29.3
Q ss_pred EEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEeCCCChHHHHHHHHHHC
Q 042857 777 VILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLSTMPNWLAEFALWA 828 (1404)
Q Consensus 777 ~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP~Sll~nW~rEf~kw~ 828 (1404)
.++....|.|||.++..+..++... ..++++|.-...-..=..++..|+
T Consensus 75 i~l~G~~G~GKTTt~akLA~~l~~~---g~~V~li~~D~~r~~a~~ql~~~~ 123 (272)
T TIGR00064 75 ILFVGVNGVGKTTTIAKLANKLKKQ---GKSVLLAAGDTFRAAAIEQLEEWA 123 (272)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHhc---CCEEEEEeCCCCCHHHHHHHHHHH
Confidence 4567899999999988888776432 235666653221111134455554
No 465
>PF13771 zf-HC5HC2H: PHD-like zinc-binding domain
Probab=42.74 E-value=12 Score=35.71 Aligned_cols=29 Identities=31% Similarity=0.950 Sum_probs=25.6
Q ss_pred cccccccCC-CceEEcC--CCCCcccccccCC
Q 042857 76 YECVICDLG-GNLLCCD--SCPRTYHLQCLDP 104 (1404)
Q Consensus 76 ~~C~~C~~~-g~ll~Cd--~C~~~~H~~Cl~P 104 (1404)
..|..|+.. |-.+.|. .|.+.||..|..-
T Consensus 37 ~~C~~C~~~~Ga~i~C~~~~C~~~fH~~CA~~ 68 (90)
T PF13771_consen 37 LKCSICKKKGGACIGCSHPGCSRSFHVPCARK 68 (90)
T ss_pred CCCcCCCCCCCeEEEEeCCCCCcEEChHHHcc
Confidence 359999998 9999998 5999999999874
No 466
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=42.59 E-value=68 Score=35.88 Aligned_cols=58 Identities=17% Similarity=0.142 Sum_probs=37.9
Q ss_pred HHHHHH-HhhccCCcEEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEeCCCChHHHHHH
Q 042857 763 ALNWLR-KCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLSTMPNWLAE 823 (1404)
Q Consensus 763 gVnwL~-~~~~~~~~~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP~Sll~nW~rE 823 (1404)
++.-++ .-+..+...+|+.+.|.|||..+..|+...... ..+++.+.......+..+.
T Consensus 8 ~LD~~l~GGi~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~---g~~~~~is~e~~~~~i~~~ 66 (229)
T TIGR03881 8 GLDKLLEGGIPRGFFVAVTGEPGTGKTIFCLHFAYKGLRD---GDPVIYVTTEESRESIIRQ 66 (229)
T ss_pred hHHHhhcCCCcCCeEEEEECCCCCChHHHHHHHHHHHHhc---CCeEEEEEccCCHHHHHHH
Confidence 444443 234456678899999999999998888765432 3467777765555444433
No 467
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=42.43 E-value=64 Score=36.65 Aligned_cols=62 Identities=13% Similarity=0.074 Sum_probs=41.2
Q ss_pred HHHHHHHH-hhccCCcEEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEeCCCChHHHHHHHHH
Q 042857 762 EALNWLRK-CWHKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLSTMPNWLAEFAL 826 (1404)
Q Consensus 762 egVnwL~~-~~~~~~~~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP~Sll~nW~rEf~k 826 (1404)
.++..|+. -+..+...+++.+.|.|||..++-|+...... ..++|.|.-.....+-.+.+..
T Consensus 8 ~~LD~~l~GG~~~gs~~lI~G~pGsGKT~la~~~l~~~~~~---ge~~lyvs~ee~~~~i~~~~~~ 70 (237)
T TIGR03877 8 PGMDEILHGGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQM---GEPGIYVALEEHPVQVRRNMAQ 70 (237)
T ss_pred HhHHHHhcCCCcCCeEEEEEcCCCCCHHHHHHHHHHHHHHc---CCcEEEEEeeCCHHHHHHHHHH
Confidence 34444433 23345667899999999999999988775432 3478888866666555555543
No 468
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=42.33 E-value=32 Score=43.43 Aligned_cols=65 Identities=22% Similarity=0.147 Sum_probs=47.4
Q ss_pred CCHHHHHHHHHHHHhhc--------cCCcEEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEeCCCChHHHHHHHHH
Q 042857 756 LFPHQLEALNWLRKCWH--------KSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLSTMPNWLAEFAL 826 (1404)
Q Consensus 756 L~pyQlegVnwL~~~~~--------~~~~~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP~Sll~nW~rEf~k 826 (1404)
..+...+++.|.+.... ...+.||+...|.|||+.+-++...+ ..+|+-|-..+++..|.-|.++
T Consensus 250 ~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~------~~~fi~v~~~~l~sk~vGesek 322 (494)
T COG0464 250 AKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALES------RSRFISVKGSELLSKWVGESEK 322 (494)
T ss_pred HHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhC------CCeEEEeeCHHHhccccchHHH
Confidence 45566777777654332 34578999999999999998877633 3467777766888999888765
No 469
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=42.28 E-value=29 Score=37.50 Aligned_cols=64 Identities=16% Similarity=0.133 Sum_probs=42.4
Q ss_pred HHHHHhhc-cCCcEEEEcCCCchHHHHHHHHHHHHHhhc-------cCCCcEEEEeCCCChHHHHHHHHHHC
Q 042857 765 NWLRKCWH-KSKNVILADEMGLGKTVSACAFISSLYCEF-------KAKLPCLVLVPLSTMPNWLAEFALWA 828 (1404)
Q Consensus 765 nwL~~~~~-~~~~~ILADEMGLGKTiqaIa~L~~L~~~~-------~~~gP~LIVvP~Sll~nW~rEf~kw~ 828 (1404)
+|++..+- .+.-++++...|.|||..++.++..+.... ...+++|++.......++.+-+..+.
T Consensus 22 ~~li~g~~~~g~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~~~~~~~rl~~~~ 93 (193)
T PF13481_consen 22 DWLIDGLLPRGELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDSESQIARRLRALL 93 (193)
T ss_dssp -EEETTEE-TTSEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-HHHHHHHHHHHH
T ss_pred ceeECCcccCCeEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCCHHHHHHHHHHHh
Confidence 34433333 456688999999999999999988877422 13457888888888777877777665
No 470
>PF13832 zf-HC5HC2H_2: PHD-zinc-finger like domain
Probab=42.12 E-value=14 Score=36.90 Aligned_cols=31 Identities=29% Similarity=0.880 Sum_probs=26.0
Q ss_pred cccccccccC-CCceEEcCC--CCCcccccccCC
Q 042857 74 YYYECVICDL-GGNLLCCDS--CPRTYHLQCLDP 104 (1404)
Q Consensus 74 ~~~~C~~C~~-~g~ll~Cd~--C~~~~H~~Cl~P 104 (1404)
....|.+|+. .|-.+.|.. |...||..|..-
T Consensus 54 ~~~~C~iC~~~~G~~i~C~~~~C~~~fH~~CA~~ 87 (110)
T PF13832_consen 54 FKLKCSICGKSGGACIKCSHPGCSTAFHPTCARK 87 (110)
T ss_pred cCCcCcCCCCCCceeEEcCCCCCCcCCCHHHHHH
Confidence 3457999998 477999997 999999999864
No 471
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=42.05 E-value=1.3e+02 Score=38.15 Aligned_cols=26 Identities=19% Similarity=0.275 Sum_probs=19.5
Q ss_pred cEEEEcCCCchHHHHHHHHHHHHHhh
Q 042857 776 NVILADEMGLGKTVSACAFISSLYCE 801 (1404)
Q Consensus 776 ~~ILADEMGLGKTiqaIa~L~~L~~~ 801 (1404)
-..|....|.|||.++.-+...+...
T Consensus 258 Vi~LvGpnGvGKTTTiaKLA~~~~~~ 283 (484)
T PRK06995 258 VFALMGPTGVGKTTTTAKLAARCVMR 283 (484)
T ss_pred EEEEECCCCccHHHHHHHHHHHHHHh
Confidence 34588899999998887777666433
No 472
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=41.48 E-value=1e+02 Score=38.13 Aligned_cols=89 Identities=12% Similarity=0.073 Sum_probs=60.1
Q ss_pred cEEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEeCCCChHHHHHHHHHHCCCCcEEEEecchhHHHHHHHhhhccCC
Q 042857 776 NVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLSTMPNWLAEFALWAPNLNVVEYHGCAKARAIIRQYEWHASD 855 (1404)
Q Consensus 776 ~~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP~Sll~nW~rEf~kw~P~l~Vvvy~G~~~~R~~ir~~E~~~~~ 855 (1404)
-.++..|.|.||+-.-+-++..+.. .+++|.|+-..-+.||.-...+..-
T Consensus 95 ~iLIgGdPGIGKSTLLLQva~~lA~----~~~vLYVsGEES~~QiklRA~RL~~-------------------------- 144 (456)
T COG1066 95 VILIGGDPGIGKSTLLLQVAARLAK----RGKVLYVSGEESLQQIKLRADRLGL-------------------------- 144 (456)
T ss_pred EEEEccCCCCCHHHHHHHHHHHHHh----cCcEEEEeCCcCHHHHHHHHHHhCC--------------------------
Confidence 3578999999999765555554432 2389999999999999777766530
Q ss_pred CCccccccCCCCceEEEeeHHHHHhhhccccCCCceEEEEccccccCCC
Q 042857 856 PDNLNKKTSSYKFNVLLTTYEMILADSSHLRGVPWEVLVVDEGHRLKNS 904 (1404)
Q Consensus 856 ~~~~~~~~~~~kfdVvITTYe~l~~d~~~L~~i~w~lVIVDEAHrlKN~ 904 (1404)
...++.+.....+..-...+...+.+++|||=.|.+-..
T Consensus 145 ----------~~~~l~l~aEt~~e~I~~~l~~~~p~lvVIDSIQT~~s~ 183 (456)
T COG1066 145 ----------PTNNLYLLAETNLEDIIAELEQEKPDLVVIDSIQTLYSE 183 (456)
T ss_pred ----------CccceEEehhcCHHHHHHHHHhcCCCEEEEeccceeecc
Confidence 012344444444444445566688999999998887553
No 473
>PRK06646 DNA polymerase III subunit chi; Provisional
Probab=41.42 E-value=48 Score=35.62 Aligned_cols=42 Identities=12% Similarity=0.160 Sum_probs=38.1
Q ss_pred hhhhHHHHHHHHHHHHHHcCCeEEEEecchhHHHHHHHHHhh
Q 042857 1068 KASAKLTLLHSMLKVLYKEGHRVLIFSQMTKLLDILEDYLNI 1109 (1404)
Q Consensus 1068 ~~SgKl~~L~kLL~kl~~~G~KVLIFSq~~~~LDiLed~L~~ 1109 (1404)
..++++.++.+|+.+....|+||+|.+.-..+++.|.++|=.
T Consensus 10 ~~~~~~~~acrL~~Ka~~~G~rv~I~~~d~~~~~~LD~~LWt 51 (154)
T PRK06646 10 SDELLLKSILLLIEKCYYSDLKSVILTADADQQEMLNKNLWT 51 (154)
T ss_pred CCChHHHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHhcC
Confidence 357899999999999999999999999999999999999953
No 474
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=41.33 E-value=35 Score=45.33 Aligned_cols=57 Identities=19% Similarity=0.086 Sum_probs=42.2
Q ss_pred CCCHHHHHHHHHHHHhhccCCcEEEEcCCCchHHHHHHHHHHHHHhhcc-CCCcEEEEeCCCCh
Q 042857 755 ALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFK-AKLPCLVLVPLSTM 817 (1404)
Q Consensus 755 ~L~pyQlegVnwL~~~~~~~~~~ILADEMGLGKTiqaIa~L~~L~~~~~-~~gP~LIVvP~Sll 817 (1404)
.|-|-|.++|.+- .+..++....|.|||.+.+.-+.+|+...+ ....+|+|+-+.-.
T Consensus 9 ~Ln~~Q~~av~~~------~g~~lV~AgaGSGKT~vl~~Ria~Li~~~~v~p~~IL~lTFT~kA 66 (721)
T PRK11773 9 SLNDKQREAVAAP------LGNMLVLAGAGSGKTRVLVHRIAWLMQVENASPYSIMAVTFTNKA 66 (721)
T ss_pred hcCHHHHHHHhCC------CCCEEEEecCCCCHHHHHHHHHHHHHHcCCCChhHeEeeeccHHH
Confidence 4889999998632 456677778999999999999999986433 23347888775433
No 475
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=40.71 E-value=24 Score=43.59 Aligned_cols=46 Identities=20% Similarity=0.190 Sum_probs=36.1
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEeCCCChHHHHHHHHH
Q 042857 775 KNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLSTMPNWLAEFAL 826 (1404)
Q Consensus 775 ~~~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP~Sll~nW~rEf~k 826 (1404)
++.+|+.+.|.|||+.+.++..... -.|.=|.|.++...|.-|.++
T Consensus 187 rglLLfGPpgtGKtmL~~aiAsE~~------atff~iSassLtsK~~Ge~eK 232 (428)
T KOG0740|consen 187 RGLLLFGPPGTGKTMLAKAIATESG------ATFFNISASSLTSKYVGESEK 232 (428)
T ss_pred chhheecCCCCchHHHHHHHHhhhc------ceEeeccHHHhhhhccChHHH
Confidence 5778999999999999988876542 247778888888888766544
No 476
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=40.71 E-value=1.1e+02 Score=38.00 Aligned_cols=58 Identities=21% Similarity=0.253 Sum_probs=37.9
Q ss_pred EEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEeCCCChHHHHHHHHHHCCCCcEEEEe
Q 042857 777 VILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLSTMPNWLAEFALWAPNLNVVEYH 837 (1404)
Q Consensus 777 ~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP~Sll~nW~rEf~kw~P~l~Vvvy~ 837 (1404)
.+++.=.|.|||.++.-+..++.. ... .+|+|+--.--+--..+++..+-.+.|-+|.
T Consensus 103 ImmvGLQGsGKTTt~~KLA~~lkk--~~~-kvllVaaD~~RpAA~eQL~~La~q~~v~~f~ 160 (451)
T COG0541 103 ILMVGLQGSGKTTTAGKLAKYLKK--KGK-KVLLVAADTYRPAAIEQLKQLAEQVGVPFFG 160 (451)
T ss_pred EEEEeccCCChHhHHHHHHHHHHH--cCC-ceEEEecccCChHHHHHHHHHHHHcCCceec
Confidence 467778899999999888888765 233 4566655444455556666666555554443
No 477
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=40.56 E-value=4.4e+02 Score=32.64 Aligned_cols=46 Identities=22% Similarity=0.144 Sum_probs=28.3
Q ss_pred ccCCcEEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEeCCCChHHH
Q 042857 772 HKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLSTMPNW 820 (1404)
Q Consensus 772 ~~~~~~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP~Sll~nW 820 (1404)
......+|..|+|+||+..+-++-.. .....+||++|--..+-..|
T Consensus 160 ~~~~~vli~Ge~GtGK~~lA~~ih~~---s~~~~~~~v~v~c~~~~~~~ 205 (445)
T TIGR02915 160 PSDITVLLLGESGTGKEVLARALHQL---SDRKDKRFVAINCAAIPENL 205 (445)
T ss_pred CCCCCEEEECCCCcCHHHHHHHHHHh---CCcCCCCeEEEECCCCChHH
Confidence 45678899999999999765443321 12244576655444443443
No 478
>PRK10263 DNA translocase FtsK; Provisional
Probab=40.33 E-value=69 Score=44.74 Aligned_cols=43 Identities=23% Similarity=0.376 Sum_probs=31.5
Q ss_pred cCCcEEEEcCCCchHHHHHHHHHHHHHhhcc-CCCcEEEEeCCC
Q 042857 773 KSKNVILADEMGLGKTVSACAFISSLYCEFK-AKLPCLVLVPLS 815 (1404)
Q Consensus 773 ~~~~~ILADEMGLGKTiqaIa~L~~L~~~~~-~~gP~LIVvP~S 815 (1404)
+..+.+++.-+|.|||...-++|..+..... ..-.+++|=|..
T Consensus 1009 k~PHLLIAGaTGSGKSv~LntLIlSLl~~~sPeeVrl~LIDPK~ 1052 (1355)
T PRK10263 1009 KMPHLLVAGTTGSGKSVGVNAMILSMLYKAQPEDVRFIMIDPKM 1052 (1355)
T ss_pred cCCcEEEecCCCCCHHHHHHHHHHHHHHhCCccceEEEEECCCc
Confidence 3578999999999999998888887765432 223466666764
No 479
>COG2842 Uncharacterized ATPase, putative transposase [General function prediction only]
Probab=40.29 E-value=59 Score=38.39 Aligned_cols=54 Identities=20% Similarity=0.174 Sum_probs=33.8
Q ss_pred HHHHHHhhccCCcEEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEeCCCChHHHHHHHH
Q 042857 764 LNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLSTMPNWLAEFA 825 (1404)
Q Consensus 764 VnwL~~~~~~~~~~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP~Sll~nW~rEf~ 825 (1404)
+.|+...-..+.-+++...-|+|||-++.-++. ..|.-++.+.+-...-..++.
T Consensus 84 ~~~~~~A~k~g~l~~vyg~~g~gKt~a~~~y~~--------s~p~~~l~~~~p~~~a~~~i~ 137 (297)
T COG2842 84 FFRTRPASKTGSLVVVYGYAGLGKTQAAKNYAP--------SNPNALLIEADPSYTALVLIL 137 (297)
T ss_pred hhhhhhhhhcCceEEEeccccchhHHHHHhhcc--------cCccceeecCChhhHHHHHHH
Confidence 445554444566778888999999987654432 336666666665555444443
No 480
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=39.63 E-value=77 Score=40.12 Aligned_cols=64 Identities=16% Similarity=0.249 Sum_probs=45.8
Q ss_pred HHHHHHHHh-hccCCcEEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEeCCCChHHHHHHHHHHC
Q 042857 762 EALNWLRKC-WHKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLSTMPNWLAEFALWA 828 (1404)
Q Consensus 762 egVnwL~~~-~~~~~~~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP~Sll~nW~rEf~kw~ 828 (1404)
.++.-++.- +..+.-.+|.-+.|.|||..++-|+...... ..++|.|.-.....+-.+..+.+.
T Consensus 250 ~~lD~~lgGG~~~gs~~li~G~~G~GKt~l~~~f~~~~~~~---ge~~~y~s~eEs~~~i~~~~~~lg 314 (484)
T TIGR02655 250 VRLDEMCGGGFFKDSIILATGATGTGKTLLVSKFLENACAN---KERAILFAYEESRAQLLRNAYSWG 314 (484)
T ss_pred HhHHHHhcCCccCCcEEEEECCCCCCHHHHHHHHHHHHHHC---CCeEEEEEeeCCHHHHHHHHHHcC
Confidence 344444331 3345667899999999999999998877542 347888888888888777776653
No 481
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=39.51 E-value=59 Score=39.05 Aligned_cols=61 Identities=25% Similarity=0.233 Sum_probs=35.7
Q ss_pred cCCCchHHHHHHHHHHHHHhhccCCCcEEEE-e-CCCChHH-HHHH----HHHHCCCCcEEEEecchhHHH
Q 042857 781 DEMGLGKTVSACAFISSLYCEFKAKLPCLVL-V-PLSTMPN-WLAE----FALWAPNLNVVEYHGCAKARA 844 (1404)
Q Consensus 781 DEMGLGKTiqaIa~L~~L~~~~~~~gP~LIV-v-P~Sll~n-W~rE----f~kw~P~l~Vvvy~G~~~~R~ 844 (1404)
.-=|.|||-+++|+..++...+ .+ +|+| + |.+-+.. ...| ..+-.|++.++-+.-....+.
T Consensus 9 GKGGVGKTT~aaA~A~~lA~~g--~k-vLlvStDPAhsL~d~f~~elg~~~~~I~~nL~a~eiD~~~~l~e 76 (322)
T COG0003 9 GKGGVGKTTIAAATAVKLAESG--KK-VLLVSTDPAHSLGDVFDLELGHDPRKVGPNLDALELDPEKALEE 76 (322)
T ss_pred cCCcccHHHHHHHHHHHHHHcC--Cc-EEEEEeCCCCchHhhhccccCCchhhcCCCCceeeecHHHHHHH
Confidence 3448999999999888887554 33 4444 4 5444422 1112 234457788877765544443
No 482
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=39.45 E-value=6.8 Score=46.78 Aligned_cols=14 Identities=29% Similarity=0.750 Sum_probs=6.4
Q ss_pred CCCCcccccccCCC
Q 042857 92 SCPRTYHLQCLDPP 105 (1404)
Q Consensus 92 ~C~~~~H~~Cl~Pp 105 (1404)
.|+-.||..|+...
T Consensus 25 ~cGhifh~~cl~qw 38 (465)
T KOG0827|consen 25 TCGHIFHTTCLTQW 38 (465)
T ss_pred chhhHHHHHHHHHH
Confidence 34444444444433
No 483
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=39.30 E-value=54 Score=41.52 Aligned_cols=24 Identities=38% Similarity=0.428 Sum_probs=19.8
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHH
Q 042857 774 SKNVILADEMGLGKTVSACAFISS 797 (1404)
Q Consensus 774 ~~~~ILADEMGLGKTiqaIa~L~~ 797 (1404)
..+.||..+.|+|||..+-++...
T Consensus 88 ~~giLL~GppGtGKT~la~alA~~ 111 (495)
T TIGR01241 88 PKGVLLVGPPGTGKTLLAKAVAGE 111 (495)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHH
Confidence 357899999999999988777643
No 484
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=39.17 E-value=70 Score=38.34 Aligned_cols=43 Identities=26% Similarity=0.328 Sum_probs=30.8
Q ss_pred CCCCCHHHHHHHHHHHHhhccCCcEEEEcCCCchHHHHHHHHHHHH
Q 042857 753 GGALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSL 798 (1404)
Q Consensus 753 g~~L~pyQlegVnwL~~~~~~~~~~ILADEMGLGKTiqaIa~L~~L 798 (1404)
.|.+.+.|.+.+.. ....+.+.+++..+|.|||-..-+++..+
T Consensus 130 ~g~~~~~~~~~L~~---~v~~~~~ilI~G~tGSGKTTll~aL~~~~ 172 (319)
T PRK13894 130 RGIMTAAQREAIIA---AVRAHRNILVIGGTGSGKTTLVNAIINEM 172 (319)
T ss_pred cCCCCHHHHHHHHH---HHHcCCeEEEECCCCCCHHHHHHHHHHhh
Confidence 34566777765544 44468899999999999997666666554
No 485
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=39.02 E-value=74 Score=37.62 Aligned_cols=48 Identities=17% Similarity=0.272 Sum_probs=36.7
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEeCCCChHHHHHHHHHHC
Q 042857 775 KNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLSTMPNWLAEFALWA 828 (1404)
Q Consensus 775 ~~~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP~Sll~nW~rEf~kw~ 828 (1404)
++.+|....|.||+..|-|+.... .-.|.-|....++..|.-|-++..
T Consensus 167 rgiLLyGPPGTGKSYLAKAVATEA------nSTFFSvSSSDLvSKWmGESEkLV 214 (439)
T KOG0739|consen 167 RGILLYGPPGTGKSYLAKAVATEA------NSTFFSVSSSDLVSKWMGESEKLV 214 (439)
T ss_pred eeEEEeCCCCCcHHHHHHHHHhhc------CCceEEeehHHHHHHHhccHHHHH
Confidence 467899999999999887766532 235777777778899998877654
No 486
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=38.55 E-value=50 Score=38.36 Aligned_cols=41 Identities=27% Similarity=0.374 Sum_probs=32.1
Q ss_pred CCHHHHHHHHHHHHhhccCCcEEEEcCCCchHHHHHHHHHHHH
Q 042857 756 LFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSL 798 (1404)
Q Consensus 756 L~pyQlegVnwL~~~~~~~~~~ILADEMGLGKTiqaIa~L~~L 798 (1404)
+.+.|.+.+.+++. ..++..+++.++|.|||-..-+++.++
T Consensus 64 ~~~~~~~~l~~~~~--~~~GlilisG~tGSGKTT~l~all~~i 104 (264)
T cd01129 64 LKPENLEIFRKLLE--KPHGIILVTGPTGSGKTTTLYSALSEL 104 (264)
T ss_pred CCHHHHHHHHHHHh--cCCCEEEEECCCCCcHHHHHHHHHhhh
Confidence 67888888877654 334557899999999998888877665
No 487
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=38.37 E-value=1.2e+02 Score=36.51 Aligned_cols=53 Identities=13% Similarity=0.016 Sum_probs=37.2
Q ss_pred HHHHHHH--hhccCCcEEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEeCCCChH
Q 042857 763 ALNWLRK--CWHKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLSTMP 818 (1404)
Q Consensus 763 gVnwL~~--~~~~~~~~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP~Sll~ 818 (1404)
++..++. -+-.+.-..++.+.|.|||..++.++..... ..+++++|-+...+.
T Consensus 42 ~LD~~Lg~GGlp~G~iteI~Gp~GsGKTtLal~~~~~~~~---~g~~~vyId~E~~~~ 96 (325)
T cd00983 42 SLDIALGIGGYPKGRIIEIYGPESSGKTTLALHAIAEAQK---LGGTVAFIDAEHALD 96 (325)
T ss_pred HHHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHH---cCCCEEEECccccHH
Confidence 4444443 3344555679999999999999988877653 245788888777664
No 488
>TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family. This model detects members of a highly divergent family of the large subunit of phage terminase. All members are encoded by phage genomes or within prophage regions of bacterial genomes. This is a distinct family from pfam03354.
Probab=38.36 E-value=1.2e+02 Score=37.14 Aligned_cols=50 Identities=12% Similarity=0.028 Sum_probs=29.9
Q ss_pred EEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEeCCC--ChHHHHHHHHH
Q 042857 777 VILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLS--TMPNWLAEFAL 826 (1404)
Q Consensus 777 ~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP~S--ll~nW~rEf~k 826 (1404)
.++...-|.|||..++..+............+||+-|.. +-.+-..+|..
T Consensus 4 ~i~~GgrgSGKS~~~~~~~~~~~~~~~~~~~~~~~r~~~~sl~~sv~~~l~~ 55 (396)
T TIGR01547 4 IIAKGGRRSGKTFAIALKLVEKLAINKKQQNILAARKVQNSIRDSVFKDIEN 55 (396)
T ss_pred EEEeCCCCcccHHHHHHHHHHHHHhcCCCcEEEEEehhhhHHHHHHHHHHHH
Confidence 466677899999888766655544432334677777753 22344444443
No 489
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=37.92 E-value=44 Score=40.74 Aligned_cols=52 Identities=21% Similarity=0.281 Sum_probs=34.2
Q ss_pred HHHHHHHHHHhhcc----CCcEEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEeCCC
Q 042857 760 QLEALNWLRKCWHK----SKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLS 815 (1404)
Q Consensus 760 QlegVnwL~~~~~~----~~~~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP~S 815 (1404)
.++|..-++..... |+..+|+.+.|.|||..|+++...| +..-||..+.-..
T Consensus 32 AReAagiiv~mIk~~K~aGr~iLiaGppGtGKTAlA~~ia~eL----G~~~PF~~isgSE 87 (398)
T PF06068_consen 32 AREAAGIIVDMIKEGKIAGRAILIAGPPGTGKTALAMAIAKEL----GEDVPFVSISGSE 87 (398)
T ss_dssp HHHHHHHHHHHHHTT--TT-EEEEEE-TTSSHHHHHHHHHHHC----TTTS-EEEEEGGG
T ss_pred HHHHHHHHHHHHhcccccCcEEEEeCCCCCCchHHHHHHHHHh----CCCCCeeEcccce
Confidence 44555444444443 5678899999999999998887665 4556888777543
No 490
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=37.65 E-value=1.8e+02 Score=38.02 Aligned_cols=95 Identities=13% Similarity=0.167 Sum_probs=69.3
Q ss_pred hhhHHHHHHHHHHHHHHcCCeEEEEecch----hHHHHHHHHHhhhcCCceEEEEeCCCCHHHHHHHHHHHhcCCCceEE
Q 042857 1069 ASAKLTLLHSMLKVLYKEGHRVLIFSQMT----KLLDILEDYLNIEFGPKTYERVDGSVSVGDRQAAITRFNQDKSRFVF 1144 (1404)
Q Consensus 1069 ~SgKl~~L~kLL~kl~~~G~KVLIFSq~~----~~LDiLed~L~~~f~g~~y~rLdGs~s~~eRq~~Id~Fn~~~s~~Vf 1144 (1404)
.|||..+..--+-...+.|.++.+..+.- +..+-+..+|... |+.+..+.|++++..|.+++.+..++... +
T Consensus 293 GSGKTvVA~laml~ai~~G~Q~ALMAPTEILA~QH~~~~~~~l~~~--~i~V~lLtG~~kgk~r~~~l~~l~~G~~~--i 368 (677)
T COG1200 293 GSGKTVVALLAMLAAIEAGYQAALMAPTEILAEQHYESLRKWLEPL--GIRVALLTGSLKGKARKEILEQLASGEID--I 368 (677)
T ss_pred CCCHHHHHHHHHHHHHHcCCeeEEeccHHHHHHHHHHHHHHHhhhc--CCeEEEeecccchhHHHHHHHHHhCCCCC--E
Confidence 47887554444445567898998888764 3345566666654 68899999999999999999998776666 6
Q ss_pred Eeecccc-cccccccCCCEEEEEc
Q 042857 1145 LLSTRSC-GLGINLATADTVIIYD 1167 (1404)
Q Consensus 1145 LLSTrAg-G~GINL~~AdtVIi~D 1167 (1404)
++-|.|. -..+++...-.||+=+
T Consensus 369 vVGTHALiQd~V~F~~LgLVIiDE 392 (677)
T COG1200 369 VVGTHALIQDKVEFHNLGLVIIDE 392 (677)
T ss_pred EEEcchhhhcceeecceeEEEEec
Confidence 7777776 6677777766666643
No 491
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=37.61 E-value=47 Score=38.30 Aligned_cols=35 Identities=23% Similarity=0.392 Sum_probs=26.6
Q ss_pred HHHHHhhccCCcEEEEcCCCchHHHHHHHHHHHHH
Q 042857 765 NWLRKCWHKSKNVILADEMGLGKTVSACAFISSLY 799 (1404)
Q Consensus 765 nwL~~~~~~~~~~ILADEMGLGKTiqaIa~L~~L~ 799 (1404)
.+|......+++.+++.++|.|||-+.-+++..+-
T Consensus 118 ~~l~~~v~~~~~ili~G~tGSGKTT~l~all~~i~ 152 (270)
T PF00437_consen 118 EFLRSAVRGRGNILISGPTGSGKTTLLNALLEEIP 152 (270)
T ss_dssp HHHHHCHHTTEEEEEEESTTSSHHHHHHHHHHHCH
T ss_pred HHHhhccccceEEEEECCCccccchHHHHHhhhcc
Confidence 34555555678899999999999998877776543
No 492
>KOG1807 consensus Helicases [Replication, recombination and repair]
Probab=37.54 E-value=40 Score=44.03 Aligned_cols=81 Identities=16% Similarity=0.091 Sum_probs=58.0
Q ss_pred CCCHHHHHHHHHHHHhhccCCcEEEEcCCCchHHHHHHHHHHHHHhhc---cCCCcEEEEeC-CCChHHHHHHHHHHCCC
Q 042857 755 ALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEF---KAKLPCLVLVP-LSTMPNWLAEFALWAPN 830 (1404)
Q Consensus 755 ~L~pyQlegVnwL~~~~~~~~~~ILADEMGLGKTiqaIa~L~~L~~~~---~~~gP~LIVvP-~Sll~nW~rEf~kw~P~ 830 (1404)
.|..-|+.+...+.. ..-.|+....|+|||.+++-++..++... ...-|+||||- .+.+.|.-.-+-.. +
T Consensus 378 ildsSq~~A~qs~lt----yelsliqgppGTgkt~vtlkav~tLL~n~s~~~~~epIlvvC~Tnhavdq~ligiy~~--q 451 (1025)
T KOG1807|consen 378 ILDSSQQFAKQSKLT----YELSLIQGPPGTGKTLVTLKAVDTLLLNSSGYTEPEPILVVCLTNHAVDQYLIGIYYH--Q 451 (1025)
T ss_pred eecHHHHHHHHHHhh----hhhheeecCCCCCceeehHHHHHHHHhcccccccccceeeeehhhHHHHHHHHHHHhc--C
Confidence 577789998877655 56678999999999999999988887553 34569999996 46778876555431 2
Q ss_pred CcEEEEecchh
Q 042857 831 LNVVEYHGCAK 841 (1404)
Q Consensus 831 l~Vvvy~G~~~ 841 (1404)
-..++..|+.-
T Consensus 452 rpsImr~gsr~ 462 (1025)
T KOG1807|consen 452 RPSIMRQGSRF 462 (1025)
T ss_pred CceEEEecccc
Confidence 33455556543
No 493
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=37.28 E-value=2.4e+02 Score=35.28 Aligned_cols=24 Identities=21% Similarity=0.260 Sum_probs=20.5
Q ss_pred cEEEEcCCCchHHHHHHHHHHHHH
Q 042857 776 NVILADEMGLGKTVSACAFISSLY 799 (1404)
Q Consensus 776 ~~ILADEMGLGKTiqaIa~L~~L~ 799 (1404)
-.+++...|.|||.++.-++.++.
T Consensus 101 vi~~vG~~GsGKTTtaakLA~~l~ 124 (428)
T TIGR00959 101 VILMVGLQGSGKTTTCGKLAYYLK 124 (428)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHH
Confidence 367899999999999988888765
No 494
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=37.02 E-value=90 Score=34.88 Aligned_cols=52 Identities=13% Similarity=0.070 Sum_probs=38.5
Q ss_pred cCCcEEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEeCCCChHHHHHHHHHH
Q 042857 773 KSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLSTMPNWLAEFALW 827 (1404)
Q Consensus 773 ~~~~~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP~Sll~nW~rEf~kw 827 (1404)
.+.-.+|+.+.|.|||..++.++...... ..+++.+.......+-.+.+..+
T Consensus 15 ~g~~~li~G~~G~GKt~~~~~~~~~~~~~---g~~~~y~s~e~~~~~l~~~~~~~ 66 (224)
T TIGR03880 15 EGHVIVVIGEYGTGKTTFSLQFLYQGLKN---GEKAMYISLEEREERILGYAKSK 66 (224)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhC---CCeEEEEECCCCHHHHHHHHHHc
Confidence 34556889999999999999888765432 45788888877766666666554
No 495
>TIGR02785 addA_Gpos recombination helicase AddA, Firmicutes type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the Firmicutes (as modeled here) and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=36.95 E-value=62 Score=45.76 Aligned_cols=62 Identities=18% Similarity=0.119 Sum_probs=46.0
Q ss_pred CCHHHHHHHHHHHHhhccCCcEEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEeCCCChHHHHHH
Q 042857 756 LFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLSTMPNWLAE 823 (1404)
Q Consensus 756 L~pyQlegVnwL~~~~~~~~~~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP~Sll~nW~rE 823 (1404)
+.+-|..++. ..+.+.++...-|.|||.+.+.-+..++..+.....+||||=+....+++++
T Consensus 2 ~t~~Q~~ai~------~~~~~~lv~A~AGsGKT~~lv~r~~~~~~~~~~~~~il~~tFt~~aa~e~~~ 63 (1232)
T TIGR02785 2 WTDEQWQAIY------TRGQNILVSASAGSGKTAVLVERIIKKILRGVDIDRLLVVTFTNAAAREMKE 63 (1232)
T ss_pred CCHHHHHHHh------CCCCCEEEEecCCCcHHHHHHHHHHHHHhcCCCHhhEEEEeccHHHHHHHHH
Confidence 5678998885 3578899999999999999988887766544222458999877666555333
No 496
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=36.87 E-value=2.2e+02 Score=31.87 Aligned_cols=61 Identities=18% Similarity=0.293 Sum_probs=37.1
Q ss_pred hccccCCCceEEEEccccccCCCc----cHHHHHHhhcccccEEEEeccCCCCChHHHHHHhhhh
Q 042857 882 SSHLRGVPWEVLVVDEGHRLKNSG----SKLFSLLNSFSFQHRVLLTGTPLQNNIGEMYNLLNFL 942 (1404)
Q Consensus 882 ~~~L~~i~w~lVIVDEAHrlKN~~----Sk~~~~L~~l~~~~rLLLTGTPlqNnl~EL~sLL~fL 942 (1404)
...+..-.|++||+||.-..-..+ .....+|..-...--+++||.-.+..+-|+..+..=+
T Consensus 115 ~~~l~~~~ydlviLDEl~~al~~g~l~~eeV~~~l~~kP~~~~vIiTGr~ap~~lie~ADlVTEm 179 (198)
T COG2109 115 KEALADGKYDLVILDELNYALRYGLLPLEEVVALLKARPEHTHVIITGRGAPPELIELADLVTEM 179 (198)
T ss_pred HHHHhCCCCCEEEEehhhHHHHcCCCCHHHHHHHHhcCCCCcEEEEECCCCCHHHHHHHHHHhhc
Confidence 345667789999999985543322 2233444444455669999976555555555554433
No 497
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=36.67 E-value=5.5e+02 Score=27.74 Aligned_cols=95 Identities=15% Similarity=0.211 Sum_probs=52.3
Q ss_pred hhhHHH-HHHHHHHHHHHc----CCeEEEEecchhHHHHHHHHHhhh--cCCceEEEEeCCCCHHHHHHHHHHHhcCCCc
Q 042857 1069 ASAKLT-LLHSMLKVLYKE----GHRVLIFSQMTKLLDILEDYLNIE--FGPKTYERVDGSVSVGDRQAAITRFNQDKSR 1141 (1404)
Q Consensus 1069 ~SgKl~-~L~kLL~kl~~~----G~KVLIFSq~~~~LDiLed~L~~~--f~g~~y~rLdGs~s~~eRq~~Id~Fn~~~s~ 1141 (1404)
.+||.. .+..++..+... +.++||.++....+..+...+... ..+..+..++|+.+..++...+. .+.
T Consensus 46 G~GKT~~~~~~~l~~~~~~~~~~~~~viii~p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~ 120 (203)
T cd00268 46 GSGKTAAFLIPILEKLDPSPKKDGPQALILAPTRELALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRKLK-----RGP 120 (203)
T ss_pred CCcHHHHHHHHHHHHHHhhcccCCceEEEEcCCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhc-----CCC
Confidence 356643 355555555543 668999999877665544443322 13677788899888765543332 222
Q ss_pred eEEEeecc-c----c-cccccccCCCEEEEEcCC
Q 042857 1142 FVFLLSTR-S----C-GLGINLATADTVIIYDSD 1169 (1404)
Q Consensus 1142 ~VfLLSTr-A----g-G~GINL~~AdtVIi~Dsd 1169 (1404)
. ++++|. . . ..-+++...+.+|+=+.+
T Consensus 121 ~-iiv~T~~~l~~~l~~~~~~~~~l~~lIvDE~h 153 (203)
T cd00268 121 H-IVVATPGRLLDLLERGKLDLSKVKYLVLDEAD 153 (203)
T ss_pred C-EEEEChHHHHHHHHcCCCChhhCCEEEEeChH
Confidence 2 444442 1 1 112566666666654433
No 498
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=36.48 E-value=68 Score=38.64 Aligned_cols=35 Identities=23% Similarity=0.317 Sum_probs=26.6
Q ss_pred HHHHHHhhccCCcEEEEcCCCchHHHHHHHHHHHH
Q 042857 764 LNWLRKCWHKSKNVILADEMGLGKTVSACAFISSL 798 (1404)
Q Consensus 764 VnwL~~~~~~~~~~ILADEMGLGKTiqaIa~L~~L 798 (1404)
..||..+...+.+.+++..+|.|||-..-+++.++
T Consensus 150 ~~~L~~~v~~~~nili~G~tgSGKTTll~aL~~~i 184 (332)
T PRK13900 150 KEFLEHAVISKKNIIISGGTSTGKTTFTNAALREI 184 (332)
T ss_pred HHHHHHHHHcCCcEEEECCCCCCHHHHHHHHHhhC
Confidence 34555566678999999999999997776655544
No 499
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=36.43 E-value=24 Score=39.45 Aligned_cols=38 Identities=32% Similarity=0.982 Sum_probs=29.4
Q ss_pred cccccccCCC--------ceEEcCCCCCcccccccCCCCCCCCCCCccCcccccc
Q 042857 76 YECVICDLGG--------NLLCCDSCPRTYHLQCLDPPLKRIPNGKWQCPKCTQK 122 (1404)
Q Consensus 76 ~~C~~C~~~g--------~ll~Cd~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~ 122 (1404)
.+|.+|...+ ....|..|...||..|... . .||.|...
T Consensus 153 fiCe~C~~~~~IfPF~~~~~~~C~~C~~v~H~~C~~~--~-------~CpkC~R~ 198 (202)
T PF13901_consen 153 FICEICNSDDIIFPFQIDTTVRCPKCKSVFHKSCFRK--K-------SCPKCARR 198 (202)
T ss_pred CCCccCCCCCCCCCCCCCCeeeCCcCccccchhhcCC--C-------CCCCcHhH
Confidence 3688887643 3788999999999999982 1 29999754
No 500
>TIGR00682 lpxK tetraacyldisaccharide 4'-kinase. Also called lipid-A 4'-kinase. This essential gene encodes an enzyme in the pathway of lipid A biosynthesis in Gram-negative organisms. A single copy of this protein is found in Gram-negative bacteria. PSI-BLAST converges on this set of apparent orthologs without identifying any other homologs.
Probab=36.24 E-value=1.2e+02 Score=36.16 Aligned_cols=19 Identities=26% Similarity=0.111 Sum_probs=16.0
Q ss_pred CCchHHHHHHHHHHHHHhh
Q 042857 783 MGLGKTVSACAFISSLYCE 801 (1404)
Q Consensus 783 MGLGKTiqaIa~L~~L~~~ 801 (1404)
=|.|||=.++.++..+...
T Consensus 39 GGTGKTP~v~~La~~l~~~ 57 (311)
T TIGR00682 39 GGTGKTPVVVWLAELLKDR 57 (311)
T ss_pred CCcChHHHHHHHHHHHHHC
Confidence 4899999999999888654
Done!