Query 042857
Match_columns 1404
No_of_seqs 765 out of 4035
Neff 6.1
Searched_HMMs 29240
Date Mon Mar 25 18:00:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042857.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042857hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mwy_W Chromo domain-containin 100.0 3E-103 1E-107 1012.6 36.0 670 609-1335 69-788 (800)
2 1z3i_X Similar to RAD54-like; 100.0 9.5E-73 3.3E-77 712.9 40.2 459 754-1224 54-552 (644)
3 1z63_A Helicase of the SNF2/RA 100.0 2.5E-68 8.6E-73 651.5 37.8 442 748-1224 31-477 (500)
4 3dmq_A RNA polymerase-associat 100.0 3.8E-48 1.3E-52 508.0 28.0 421 754-1217 152-632 (968)
5 1wp9_A ATP-dependent RNA helic 100.0 6.2E-44 2.1E-48 426.5 31.9 425 754-1216 8-491 (494)
6 1z5z_A Helicase of the SNF2/RA 100.0 8.8E-42 3E-46 387.6 20.1 237 976-1224 12-248 (271)
7 2fwr_A DNA repair protein RAD2 100.0 2E-39 6.7E-44 393.6 22.3 370 753-1216 91-470 (472)
8 3hgt_A HDA1 complex subunit 3; 100.0 1.1E-36 3.8E-41 348.8 20.8 215 989-1212 20-249 (328)
9 4a2p_A RIG-I, retinoic acid in 100.0 7E-36 2.4E-40 367.2 28.4 424 754-1216 6-523 (556)
10 4a2q_A RIG-I, retinoic acid in 100.0 2.9E-35 1E-39 379.9 29.6 406 753-1216 246-764 (797)
11 3tbk_A RIG-I helicase domain; 100.0 1.5E-35 5.3E-40 363.2 25.0 417 754-1206 3-513 (555)
12 4a2w_A RIG-I, retinoic acid in 100.0 1.4E-35 4.9E-40 388.2 25.8 402 753-1213 246-762 (936)
13 2ykg_A Probable ATP-dependent 100.0 7E-33 2.4E-37 351.6 23.9 422 754-1205 12-521 (696)
14 2oca_A DAR protein, ATP-depend 100.0 3.3E-32 1.1E-36 333.3 28.6 347 755-1208 113-466 (510)
15 4gl2_A Interferon-induced heli 100.0 1.3E-32 4.5E-37 349.2 23.6 415 754-1206 6-525 (699)
16 1xti_A Probable ATP-dependent 100.0 2E-29 6.9E-34 296.1 32.6 330 755-1213 30-369 (391)
17 3h1t_A Type I site-specific re 100.0 2.6E-30 9E-35 322.7 24.5 362 745-1197 167-558 (590)
18 1s2m_A Putative ATP-dependent 100.0 2.1E-28 7E-33 289.0 33.1 315 755-1200 43-365 (400)
19 1hv8_A Putative ATP-dependent 100.0 1.6E-29 5.5E-34 293.2 22.3 310 755-1201 28-346 (367)
20 2j0s_A ATP-dependent RNA helic 100.0 2.7E-28 9.2E-33 289.3 29.8 317 755-1200 59-383 (410)
21 2z0m_A 337AA long hypothetical 100.0 1.7E-28 5.9E-33 281.6 23.6 311 755-1210 16-334 (337)
22 1fuu_A Yeast initiation factor 100.0 9.3E-29 3.2E-33 290.4 16.0 316 755-1200 43-366 (394)
23 3pey_A ATP-dependent RNA helic 100.0 8.4E-27 2.9E-31 273.1 30.2 326 755-1212 27-367 (395)
24 3eiq_A Eukaryotic initiation f 100.0 1E-27 3.5E-32 283.7 22.0 318 755-1200 62-387 (414)
25 2db3_A ATP-dependent RNA helic 100.0 1.8E-26 6.3E-31 277.9 32.2 314 755-1199 78-406 (434)
26 2i4i_A ATP-dependent RNA helic 100.0 1.7E-26 6E-31 273.7 30.7 316 755-1200 37-383 (417)
27 3fht_A ATP-dependent RNA helic 99.9 1.7E-25 5.9E-30 264.1 32.9 329 755-1214 47-392 (412)
28 3oiy_A Reverse gyrase helicase 99.9 5.9E-25 2E-29 261.9 30.0 315 754-1214 20-375 (414)
29 2eyq_A TRCF, transcription-rep 99.9 2.3E-25 7.9E-30 296.4 24.6 312 753-1200 601-922 (1151)
30 1oyw_A RECQ helicase, ATP-depe 99.9 9.2E-25 3.2E-29 269.4 27.4 304 755-1193 25-338 (523)
31 3sqw_A ATP-dependent RNA helic 99.9 2.9E-24 1E-28 267.8 28.6 338 755-1212 43-408 (579)
32 3i5x_A ATP-dependent RNA helic 99.9 4.1E-24 1.4E-28 264.8 25.9 338 755-1212 94-459 (563)
33 2v1x_A ATP-dependent DNA helic 99.9 4.7E-24 1.6E-28 266.5 25.7 312 755-1194 44-370 (591)
34 1gm5_A RECG; helicase, replica 99.9 4.8E-25 1.6E-29 281.9 16.2 309 755-1193 368-692 (780)
35 3fho_A ATP-dependent RNA helic 99.9 1.1E-24 3.9E-29 267.6 13.8 313 755-1194 141-466 (508)
36 3fmp_B ATP-dependent RNA helic 99.9 2.4E-24 8.3E-29 261.9 12.7 311 755-1193 114-441 (479)
37 2xgj_A ATP-dependent RNA helic 99.9 9.6E-22 3.3E-26 258.4 34.3 360 753-1209 84-508 (1010)
38 2p6r_A Afuhel308 helicase; pro 99.9 1.4E-20 4.9E-25 239.8 28.8 321 755-1204 25-392 (702)
39 2zj8_A DNA helicase, putative 99.9 4E-20 1.4E-24 236.3 31.4 323 755-1204 23-391 (720)
40 2va8_A SSO2462, SKI2-type heli 99.9 3.4E-20 1.2E-24 236.7 30.4 329 755-1201 30-409 (715)
41 3l9o_A ATP-dependent RNA helic 99.9 1.7E-20 5.8E-25 248.6 26.9 369 754-1211 183-608 (1108)
42 4a4z_A Antiviral helicase SKI2 99.8 1E-19 3.5E-24 239.1 31.2 393 742-1208 26-500 (997)
43 4ddu_A Reverse gyrase; topoiso 99.8 3.7E-19 1.3E-23 235.8 29.6 317 753-1216 76-504 (1104)
44 2w00_A HSDR, R.ECOR124I; ATP-b 99.8 5E-19 1.7E-23 232.0 27.5 350 755-1198 271-707 (1038)
45 1gku_B Reverse gyrase, TOP-RG; 99.8 1.4E-18 4.9E-23 230.0 22.8 319 753-1216 55-468 (1054)
46 2h1e_A Chromo domain protein 1 99.7 5E-19 1.7E-23 187.7 0.4 104 609-713 44-175 (177)
47 1rif_A DAR protein, DNA helica 99.7 1.8E-17 6.2E-22 188.0 11.4 163 754-944 112-278 (282)
48 2v6i_A RNA helicase; membrane, 99.7 1.9E-16 6.7E-21 190.8 20.5 100 1086-1194 170-287 (431)
49 1tf5_A Preprotein translocase 99.7 1.2E-16 4E-21 202.2 17.7 117 1069-1191 414-538 (844)
50 1yks_A Genome polyprotein [con 99.7 1.8E-16 6.2E-21 191.6 17.5 102 1085-1197 175-296 (440)
51 2jlq_A Serine protease subunit 99.7 7.8E-17 2.7E-21 195.3 13.8 93 1086-1187 187-299 (451)
52 2fsf_A Preprotein translocase 99.7 3.1E-16 1.1E-20 197.9 19.1 117 1069-1191 423-576 (853)
53 2hjv_A ATP-dependent RNA helic 99.7 2.9E-16 1E-20 164.1 13.8 135 1069-1213 19-153 (163)
54 1t5i_A C_terminal domain of A 99.7 4.7E-16 1.6E-20 164.3 15.3 134 1069-1211 15-148 (172)
55 1nkt_A Preprotein translocase 99.7 4.9E-16 1.7E-20 196.3 17.3 117 1069-1191 442-610 (922)
56 2jgn_A DBX, DDX3, ATP-dependen 99.7 2.6E-16 9E-21 168.4 12.5 125 1069-1200 29-153 (185)
57 2b2y_A CHD-1, chromodomain-hel 99.7 2.2E-17 7.4E-22 176.7 3.6 106 608-714 54-184 (187)
58 2fz4_A DNA repair protein RAD2 99.7 5.6E-16 1.9E-20 172.2 15.1 145 748-931 86-232 (237)
59 2wv9_A Flavivirin protease NS2 99.6 3.8E-16 1.3E-20 197.6 13.6 121 1085-1216 408-550 (673)
60 2z83_A Helicase/nucleoside tri 99.6 1.2E-15 4.2E-20 185.2 17.3 105 1086-1200 189-313 (459)
61 2p6n_A ATP-dependent RNA helic 99.6 1.1E-15 3.7E-20 164.6 13.3 123 1069-1200 39-161 (191)
62 2whx_A Serine protease/ntpase/ 99.6 3.8E-15 1.3E-19 187.1 18.7 120 1085-1214 353-493 (618)
63 1fuk_A Eukaryotic initiation f 99.6 1.4E-15 4.8E-20 159.2 11.8 124 1071-1202 16-139 (165)
64 2xau_A PRE-mRNA-splicing facto 99.6 3E-15 1E-19 192.4 17.0 114 1086-1202 302-445 (773)
65 3o8b_A HCV NS3 protease/helica 99.6 1.4E-15 4.8E-20 190.6 11.6 262 772-1203 230-517 (666)
66 2rb4_A ATP-dependent RNA helic 99.6 7.7E-15 2.6E-19 155.0 14.7 124 1070-1201 19-148 (175)
67 3rc3_A ATP-dependent RNA helic 99.6 3.4E-14 1.2E-18 179.5 23.3 107 1090-1199 323-444 (677)
68 4f92_B U5 small nuclear ribonu 99.6 8.8E-14 3E-18 191.0 28.5 321 755-1200 926-1308(1724)
69 2gxq_A Heat resistant RNA depe 99.6 1.9E-14 6.4E-19 154.5 15.6 154 755-927 23-185 (207)
70 1t6n_A Probable ATP-dependent 99.6 2.3E-14 7.7E-19 155.9 16.3 161 755-934 36-206 (220)
71 2yjt_D ATP-dependent RNA helic 99.3 2.6E-16 9E-21 165.6 0.0 118 1070-1193 15-132 (170)
72 4f92_B U5 small nuclear ribonu 99.6 3.7E-13 1.3E-17 184.9 30.3 325 755-1202 79-475 (1724)
73 3eaq_A Heat resistant RNA depe 99.6 2.4E-14 8.1E-19 156.4 15.0 135 1069-1213 15-149 (212)
74 3b6e_A Interferon-induced heli 99.5 1.2E-14 4E-19 156.5 10.1 132 753-903 31-176 (216)
75 2oxc_A Probable ATP-dependent 99.5 6.8E-14 2.3E-18 153.8 16.0 153 755-927 46-208 (230)
76 1vec_A ATP-dependent RNA helic 99.5 1.3E-13 4.6E-18 147.9 16.7 154 755-927 25-187 (206)
77 1q0u_A Bstdead; DEAD protein, 99.5 7.5E-14 2.5E-18 152.0 14.0 160 755-934 26-197 (219)
78 2pl3_A Probable ATP-dependent 99.5 1.1E-13 3.8E-18 152.2 15.4 153 755-927 47-212 (236)
79 1c4o_A DNA nucleotide excision 99.5 1.8E-12 6E-17 164.3 27.7 124 1071-1201 423-551 (664)
80 3jux_A Protein translocase sub 99.5 6.3E-13 2.2E-17 165.1 22.2 117 1069-1191 456-580 (822)
81 3ber_A Probable ATP-dependent 99.5 1.9E-13 6.5E-18 152.6 15.5 154 755-927 65-227 (249)
82 1qde_A EIF4A, translation init 99.5 2.4E-13 8.2E-18 148.0 15.7 153 755-927 36-196 (224)
83 3i32_A Heat resistant RNA depe 99.5 9.2E-14 3.1E-18 159.8 9.9 125 1069-1201 12-136 (300)
84 1wrb_A DJVLGB; RNA helicase, D 99.4 5.7E-13 2E-17 148.2 15.4 154 755-927 45-219 (253)
85 3bor_A Human initiation factor 99.4 4.9E-13 1.7E-17 147.7 14.7 155 755-927 52-214 (237)
86 1fp0_A KAP-1 corepressor; PHD 99.4 3E-13 1E-17 126.7 6.6 55 68-122 18-72 (88)
87 1mm2_A MI2-beta; PHD, zinc fin 99.4 2.7E-13 9.3E-18 119.4 5.0 53 70-122 4-56 (61)
88 3iuy_A Probable ATP-dependent 99.4 5.7E-12 1.9E-16 137.9 16.3 154 755-927 42-208 (228)
89 2d7d_A Uvrabc system protein B 99.4 3.2E-11 1.1E-15 152.7 24.7 124 1071-1201 429-557 (661)
90 1xwh_A Autoimmune regulator; P 99.3 3.6E-13 1.2E-17 120.6 4.5 52 72-123 5-56 (66)
91 2yql_A PHD finger protein 21A; 99.3 4.5E-13 1.5E-17 116.0 3.9 52 70-121 4-55 (56)
92 3dkp_A Probable ATP-dependent 99.3 1.5E-11 5.2E-16 135.9 16.4 155 755-927 51-220 (245)
93 3fe2_A Probable ATP-dependent 99.3 2.3E-11 8E-16 134.6 16.8 154 755-927 51-217 (242)
94 2puy_A PHD finger protein 21A; 99.3 6.4E-13 2.2E-17 116.7 3.3 51 72-122 2-52 (60)
95 2lri_C Autoimmune regulator; Z 99.3 8.8E-13 3E-17 117.8 4.0 49 74-122 11-59 (66)
96 2l5u_A Chromodomain-helicase-D 99.3 9E-13 3.1E-17 116.1 4.0 52 71-122 7-58 (61)
97 3ly5_A ATP-dependent RNA helic 99.3 1.8E-11 6.2E-16 137.6 14.8 154 755-927 76-242 (262)
98 3u5n_A E3 ubiquitin-protein li 99.2 4.4E-12 1.5E-16 138.3 5.2 55 70-124 2-56 (207)
99 3o36_A Transcription intermedi 99.2 6.4E-12 2.2E-16 134.6 4.6 51 73-123 2-52 (184)
100 1f62_A Transcription factor WS 99.2 6.8E-12 2.3E-16 106.5 2.8 46 77-122 2-50 (51)
101 2ipc_A Preprotein translocase 99.2 7.3E-10 2.5E-14 140.2 22.1 145 753-937 77-237 (997)
102 2e6r_A Jumonji/ARID domain-con 99.2 1E-11 3.5E-16 118.2 4.1 51 72-122 13-66 (92)
103 2yt5_A Metal-response element- 99.1 8.9E-12 3E-16 111.5 2.5 53 71-123 2-62 (66)
104 2vl7_A XPD; helicase, unknown 99.1 1.3E-09 4.6E-14 134.9 22.1 78 753-838 5-83 (540)
105 3fmo_B ATP-dependent RNA helic 99.1 4.3E-10 1.5E-14 129.1 14.9 153 755-927 114-277 (300)
106 1wev_A Riken cDNA 1110020M19; 99.1 1.9E-11 6.5E-16 115.4 2.8 50 74-123 15-73 (88)
107 2ee1_A Chromodomain helicase-D 99.1 2.2E-11 7.5E-16 107.7 2.1 58 656-714 6-63 (64)
108 3asl_A E3 ubiquitin-protein li 99.1 4.7E-11 1.6E-15 108.0 3.7 46 77-122 20-69 (70)
109 2l43_A N-teminal domain from h 99.1 4.7E-11 1.6E-15 112.7 3.5 49 73-123 23-76 (88)
110 2ro1_A Transcription intermedi 99.1 4.4E-11 1.5E-15 128.6 3.6 48 75-122 2-49 (189)
111 2e6s_A E3 ubiquitin-protein li 99.1 7.6E-11 2.6E-15 108.4 4.3 45 77-121 28-76 (77)
112 2ku3_A Bromodomain-containing 99.0 4.9E-11 1.7E-15 108.0 1.8 49 72-122 13-66 (71)
113 3shb_A E3 ubiquitin-protein li 99.0 2.8E-10 9.6E-15 104.6 4.1 45 77-121 28-76 (77)
114 4gne_A Histone-lysine N-methyl 98.9 3.8E-10 1.3E-14 109.9 4.4 52 69-122 9-62 (107)
115 3ask_A E3 ubiquitin-protein li 98.9 3.5E-10 1.2E-14 123.1 3.7 46 77-122 176-225 (226)
116 3v43_A Histone acetyltransfera 98.9 5.7E-10 2E-14 110.1 4.4 49 74-122 60-112 (112)
117 2kwj_A Zinc finger protein DPF 98.9 7.9E-10 2.7E-14 109.5 3.3 48 75-122 58-108 (114)
118 2epb_A Chromodomain-helicase-D 98.8 5E-10 1.7E-14 100.6 1.2 57 655-715 5-66 (68)
119 2lbm_A Transcriptional regulat 98.8 5.2E-10 1.8E-14 113.9 1.2 55 68-122 56-117 (142)
120 2k16_A Transcription initiatio 98.8 1.5E-09 5.2E-14 99.4 2.9 51 72-122 15-68 (75)
121 2ysm_A Myeloid/lymphoid or mix 98.8 3.1E-09 1.1E-13 104.7 3.9 49 75-123 54-105 (111)
122 1weu_A Inhibitor of growth fam 98.7 1.4E-08 4.8E-13 96.0 7.1 47 74-123 35-86 (91)
123 1wen_A Inhibitor of growth fam 98.7 1.5E-08 5.1E-13 91.8 5.7 48 73-123 14-66 (71)
124 3c6w_A P28ING5, inhibitor of g 98.6 8.1E-09 2.8E-13 90.2 2.4 46 74-122 8-58 (59)
125 2vnf_A ING 4, P29ING4, inhibit 98.6 1E-08 3.5E-13 89.9 2.4 46 74-122 9-59 (60)
126 3ql9_A Transcriptional regulat 98.6 4.1E-09 1.4E-13 105.6 -0.8 55 68-122 50-111 (129)
127 2g6q_A Inhibitor of growth pro 98.6 1.6E-08 5.6E-13 89.2 2.5 46 74-122 10-60 (62)
128 3crv_A XPD/RAD3 related DNA he 98.6 2E-07 6.9E-12 115.7 12.7 143 753-903 1-187 (551)
129 3llm_A ATP-dependent RNA helic 98.5 2E-07 7E-12 102.7 10.2 150 755-928 61-219 (235)
130 2lv9_A Histone-lysine N-methyl 98.5 6.7E-08 2.3E-12 93.1 5.2 45 77-122 32-76 (98)
131 2jmi_A Protein YNG1, ING1 homo 98.4 7.4E-08 2.5E-12 90.9 2.9 46 73-121 24-75 (90)
132 2ysm_A Myeloid/lymphoid or mix 98.4 1.2E-07 4.2E-12 93.3 4.2 49 72-120 4-55 (111)
133 1x4i_A Inhibitor of growth pro 98.1 7E-07 2.4E-11 80.7 1.9 45 75-122 6-55 (70)
134 1we9_A PHD finger family prote 98.0 3.1E-06 1E-10 75.0 3.1 52 73-124 4-60 (64)
135 3o70_A PHD finger protein 13; 97.9 5.1E-06 1.8E-10 74.6 3.7 48 72-121 16-66 (68)
136 2rsn_A Chromo domain-containin 97.9 2.3E-06 8E-11 78.2 1.4 54 659-714 19-72 (75)
137 2dnt_A Chromodomain protein, Y 97.9 3.6E-06 1.2E-10 77.6 1.9 55 659-715 11-65 (78)
138 4a15_A XPD helicase, ATP-depen 97.8 4.3E-05 1.5E-09 96.2 11.5 84 755-840 3-89 (620)
139 2xb1_A Pygopus homolog 2, B-ce 97.8 3.5E-06 1.2E-10 82.1 1.3 46 76-123 4-62 (105)
140 1wee_A PHD finger family prote 97.8 9.5E-06 3.3E-10 73.6 3.8 51 71-122 12-66 (72)
141 1wem_A Death associated transc 97.8 4.1E-06 1.4E-10 76.8 0.9 50 71-123 12-71 (76)
142 2kwj_A Zinc finger protein DPF 97.7 3.9E-06 1.3E-10 83.0 -0.1 44 77-120 3-59 (114)
143 2ri7_A Nucleosome-remodeling f 97.7 3.1E-06 1.1E-10 89.6 -1.2 50 73-123 6-60 (174)
144 2vpb_A Hpygo1, pygopus homolog 97.7 5E-06 1.7E-10 74.0 -0.6 45 74-120 7-64 (65)
145 1g6z_A CLR4 protein; transfera 97.6 1.7E-05 5.7E-10 71.7 2.6 53 660-715 8-61 (70)
146 1wew_A DNA-binding family prot 97.6 1.8E-05 6.2E-10 73.0 2.4 48 73-123 14-73 (78)
147 1wil_A KIAA1045 protein; ring 97.5 1.6E-05 5.6E-10 72.6 0.7 51 73-123 13-77 (89)
148 1wep_A PHF8; structural genomi 97.5 2.5E-05 8.6E-10 72.2 1.9 50 73-123 10-64 (79)
149 2dnv_A Chromobox protein homol 97.5 2.7E-05 9.4E-10 69.0 1.9 48 662-713 11-58 (64)
150 3kqi_A GRC5, PHD finger protei 97.4 3.2E-05 1.1E-09 70.7 1.5 52 72-124 7-63 (75)
151 2b2y_C CHD-1, chromodomain-hel 97.4 8.1E-05 2.8E-09 72.8 3.9 42 608-649 54-98 (115)
152 1q3l_A Heterochromatin protein 97.4 2.3E-05 7.8E-10 70.5 -0.0 52 659-714 14-65 (69)
153 1x3p_A Cpsrp43; chromo-2 domai 97.4 2.9E-05 9.9E-10 66.5 0.5 45 663-713 2-47 (54)
154 2d9u_A Chromobox protein homol 97.4 3.7E-05 1.2E-09 70.2 1.0 52 662-717 11-62 (74)
155 3v43_A Histone acetyltransfera 97.4 1.8E-05 6.3E-10 77.9 -1.2 44 77-120 7-62 (112)
156 2rsd_A E3 SUMO-protein ligase 97.3 9.3E-05 3.2E-09 66.4 3.2 44 76-122 11-65 (68)
157 4hae_A CDY-like 2, chromodomai 97.3 3.2E-05 1.1E-09 71.8 0.1 40 658-697 20-59 (81)
158 3mts_A Histone-lysine N-methyl 97.3 5.2E-05 1.8E-09 67.2 1.2 51 663-717 2-52 (64)
159 3f2u_A Chromobox protein homol 97.2 4.4E-05 1.5E-09 65.7 0.0 48 663-714 4-51 (55)
160 3lwe_A M-phase phosphoprotein 97.2 6.9E-05 2.3E-09 66.1 1.3 52 662-716 5-56 (62)
161 3i91_A Chromobox protein homol 97.2 3.5E-05 1.2E-09 66.0 -0.7 49 662-714 4-52 (54)
162 2kgg_A Histone demethylase jar 97.2 4.6E-05 1.6E-09 64.8 -0.1 41 78-120 5-52 (52)
163 1ap0_A Modifier protein 1; chr 97.2 6.6E-05 2.2E-09 68.4 0.8 49 662-714 14-62 (73)
164 3o7a_A PHD finger protein 13 v 97.2 0.00014 4.8E-09 61.7 2.8 43 77-121 6-51 (52)
165 2dnt_A Chromodomain protein, Y 97.1 0.00013 4.4E-09 67.3 1.7 40 610-650 28-67 (78)
166 3kv5_D JMJC domain-containing 97.1 7E-05 2.4E-09 91.1 -0.2 48 73-123 35-89 (488)
167 2k1b_A Chromobox protein homol 97.1 8.4E-05 2.9E-09 67.6 0.4 48 662-713 22-69 (73)
168 3fdt_A Chromobox protein homol 97.1 7.2E-05 2.5E-09 65.3 -0.1 49 662-714 4-52 (59)
169 3h91_A Chromobox protein homol 97.1 7.1E-05 2.4E-09 64.1 -0.2 49 662-714 4-52 (54)
170 2kvm_A Chromobox protein homol 97.1 0.00012 4.1E-09 66.8 1.2 52 662-717 14-65 (74)
171 2epb_A Chromodomain-helicase-D 97.0 0.00018 6.3E-09 64.5 1.9 35 611-648 32-66 (68)
172 1pfb_A Polycomb protein; chrom 97.0 6.3E-05 2.2E-09 64.7 -1.1 48 662-713 4-51 (55)
173 2rso_A Chromatin-associated pr 97.0 0.00027 9.1E-09 67.2 2.8 52 662-715 31-84 (92)
174 1pdq_A Polycomb protein; methy 96.7 0.0002 7E-09 64.8 -0.3 51 660-714 19-69 (72)
175 3upu_A ATP-dependent DNA helic 96.7 0.011 3.9E-07 71.4 14.6 143 754-930 24-167 (459)
176 3g7l_A Chromo domain-containin 96.7 0.00044 1.5E-08 60.7 1.2 50 661-714 7-57 (61)
177 4b3f_X DNA-binding protein smu 96.6 0.021 7.1E-07 72.2 16.8 68 754-827 188-256 (646)
178 3e1s_A Exodeoxyribonuclease V, 96.6 0.0093 3.2E-07 74.4 13.3 132 753-930 187-318 (574)
179 2d9u_A Chromobox protein homol 96.6 0.00048 1.6E-08 62.8 0.8 37 611-649 25-61 (74)
180 2gk6_A Regulator of nonsense t 96.5 0.017 5.6E-07 72.8 14.7 161 755-930 180-376 (624)
181 3lqh_A Histone-lysine N-methyl 96.5 0.00077 2.6E-08 71.8 1.7 49 77-125 4-66 (183)
182 3lwe_A M-phase phosphoprotein 96.4 0.0013 4.5E-08 57.9 2.6 39 610-649 18-56 (62)
183 3h91_A Chromobox protein homol 96.4 0.00063 2.2E-08 58.2 0.3 37 610-648 17-53 (54)
184 3mts_A Histone-lysine N-methyl 96.4 0.00078 2.7E-08 59.7 0.9 38 610-649 14-51 (64)
185 2wjy_A Regulator of nonsense t 96.3 0.022 7.5E-07 73.7 14.5 161 755-930 356-552 (800)
186 3i91_A Chromobox protein homol 96.3 0.00075 2.6E-08 57.7 0.6 37 610-648 17-53 (54)
187 3f2u_A Chromobox protein homol 96.3 0.00067 2.3E-08 58.3 0.3 37 610-648 16-52 (55)
188 2xzl_A ATP-dependent helicase 96.3 0.024 8.1E-07 73.4 14.7 161 755-930 360-554 (802)
189 2rsn_A Chromo domain-containin 96.3 0.0015 5.2E-08 59.7 2.4 38 610-648 36-73 (75)
190 1q3l_A Heterochromatin protein 96.2 0.00093 3.2E-08 60.1 0.6 36 611-648 31-66 (69)
191 2dnv_A Chromobox protein homol 96.1 0.001 3.6E-08 58.9 0.5 37 611-649 25-61 (64)
192 1pfb_A Polycomb protein; chrom 96.1 0.00086 3E-08 57.6 -0.1 35 611-647 18-52 (55)
193 3fdt_A Chromobox protein homol 96.0 0.0011 3.9E-08 57.7 -0.0 38 610-649 17-54 (59)
194 2kvm_A Chromobox protein homol 95.9 0.0015 5.3E-08 59.5 0.6 37 610-648 27-63 (74)
195 2ee1_A Chromodomain helicase-D 95.9 0.0012 4.3E-08 58.3 -0.1 37 610-646 26-62 (64)
196 3lfu_A DNA helicase II; SF1 he 95.9 0.4 1.4E-05 60.0 22.4 67 755-827 9-77 (647)
197 1ap0_A Modifier protein 1; chr 95.9 0.0012 4E-08 60.1 -0.5 38 611-650 28-65 (73)
198 1g6z_A CLR4 protein; transfera 95.8 0.0019 6.6E-08 58.2 0.9 38 611-649 24-62 (70)
199 1w36_D RECD, exodeoxyribonucle 95.8 0.022 7.6E-07 71.5 10.6 148 757-932 151-303 (608)
200 2k1b_A Chromobox protein homol 95.6 0.002 6.7E-08 58.6 -0.1 36 611-648 36-71 (73)
201 2rso_A Chromatin-associated pr 95.5 0.011 3.8E-07 56.0 4.5 41 610-651 46-87 (92)
202 1pdq_A Polycomb protein; methy 95.4 0.0021 7E-08 58.3 -0.6 35 610-646 34-68 (72)
203 4bbq_A Lysine-specific demethy 95.4 0.0049 1.7E-07 60.8 1.9 37 87-123 75-115 (117)
204 2h1e_A Chromo domain protein 1 95.3 0.0072 2.5E-07 64.1 3.1 39 608-646 137-175 (177)
205 2b2y_A CHD-1, chromodomain-hel 95.3 0.014 4.9E-07 62.3 5.2 39 610-648 147-185 (187)
206 3g7l_A Chromo domain-containin 95.2 0.0041 1.4E-07 54.5 0.7 33 612-646 24-56 (61)
207 2o0j_A Terminase, DNA packagin 95.2 0.1 3.5E-06 61.8 12.7 155 754-940 162-324 (385)
208 3kv4_A PHD finger protein 8; e 95.1 0.0026 8.9E-08 76.5 -1.4 45 77-124 7-58 (447)
209 3pur_A Lysine-specific demethy 95.0 0.0069 2.4E-07 73.4 1.9 37 86-122 57-94 (528)
210 3rsn_A SET1/ASH2 histone methy 94.4 0.024 8.4E-07 59.6 4.0 46 77-123 7-60 (177)
211 4hae_A CDY-like 2, chromodomai 94.3 0.0088 3E-07 55.4 0.4 25 610-634 38-62 (81)
212 2orw_A Thymidine kinase; TMTK, 94.2 0.11 3.6E-06 55.2 8.6 37 775-814 4-40 (184)
213 2b8t_A Thymidine kinase; deoxy 94.0 0.33 1.1E-05 53.2 12.2 40 773-815 11-50 (223)
214 3a1b_A DNA (cytosine-5)-methyl 93.9 0.015 5.1E-07 60.1 1.1 56 68-123 72-135 (159)
215 1a5t_A Delta prime, HOLB; zinc 93.7 0.21 7.3E-06 57.6 10.5 46 756-801 3-51 (334)
216 1x3p_A Cpsrp43; chromo-2 domai 93.5 0.0035 1.2E-07 53.6 -3.6 33 611-648 16-49 (54)
217 3cpe_A Terminase, DNA packagin 93.0 0.7 2.4E-05 57.7 14.3 147 754-930 162-316 (592)
218 3syl_A Protein CBBX; photosynt 92.3 0.22 7.6E-06 56.1 7.8 41 774-814 67-108 (309)
219 3vkw_A Replicase large subunit 92.0 0.22 7.7E-06 59.9 7.7 108 777-930 164-272 (446)
220 2b2y_C CHD-1, chromodomain-hel 91.8 0.047 1.6E-06 53.5 1.3 37 660-697 35-77 (115)
221 2pv0_B DNA (cytosine-5)-methyl 91.8 0.025 8.7E-07 66.3 -0.7 56 68-123 86-149 (386)
222 2j9r_A Thymidine kinase; TK1, 91.7 0.39 1.3E-05 52.4 8.4 35 778-815 32-66 (214)
223 2ku7_A MLL1 PHD3-CYP33 RRM chi 90.6 0.046 1.6E-06 54.5 -0.1 36 87-122 2-44 (140)
224 4gne_A Histone-lysine N-methyl 90.3 0.12 4.1E-06 50.3 2.5 38 78-116 61-98 (107)
225 4a15_A XPD helicase, ATP-depen 90.2 0.84 2.9E-05 57.3 10.7 101 1085-1193 446-579 (620)
226 3u61_B DNA polymerase accessor 90.1 1.2 4.1E-05 50.5 11.2 41 889-929 105-147 (324)
227 1xx6_A Thymidine kinase; NESG, 90.1 0.88 3E-05 48.6 9.3 36 776-814 10-45 (191)
228 2chg_A Replication factor C sm 90.1 2.5 8.7E-05 43.9 12.9 25 775-799 39-63 (226)
229 1l8q_A Chromosomal replication 88.6 2.6 8.8E-05 47.9 12.5 37 774-813 37-73 (324)
230 3bos_A Putative DNA replicatio 88.2 0.84 2.9E-05 48.7 7.6 38 762-799 38-77 (242)
231 2p65_A Hypothetical protein PF 88.1 2.9 9.8E-05 42.4 11.3 26 774-799 43-68 (187)
232 1njg_A DNA polymerase III subu 88.1 2.2 7.4E-05 44.9 10.7 43 757-799 28-70 (250)
233 1sxj_D Activator 1 41 kDa subu 87.3 1.3 4.4E-05 50.6 8.9 35 765-799 47-83 (353)
234 3mwy_W Chromo domain-containin 87.2 0.11 3.9E-06 67.1 -0.1 36 662-697 38-91 (800)
235 2orv_A Thymidine kinase; TP4A 87.1 1.6 5.6E-05 48.1 9.0 36 777-815 22-57 (234)
236 1jbk_A CLPB protein; beta barr 85.2 10 0.00035 38.2 13.6 27 774-800 43-69 (195)
237 2gno_A DNA polymerase III, gam 85.0 3.1 0.00011 47.5 10.4 38 760-797 2-41 (305)
238 1jr3_A DNA polymerase III subu 85.0 5.4 0.00018 45.7 12.6 43 757-799 21-63 (373)
239 2qp9_X Vacuolar protein sortin 84.8 0.85 2.9E-05 53.1 5.7 34 774-813 84-117 (355)
240 1iqp_A RFCS; clamp loader, ext 84.6 5 0.00017 44.9 11.8 24 776-799 48-71 (327)
241 3eie_A Vacuolar protein sortin 84.5 0.99 3.4E-05 51.6 6.1 36 774-815 51-86 (322)
242 3h4m_A Proteasome-activating n 84.2 0.88 3E-05 50.5 5.3 39 772-816 49-87 (285)
243 2qby_B CDC6 homolog 3, cell di 84.1 2.7 9.3E-05 48.4 9.6 44 757-800 25-71 (384)
244 3n70_A Transport activator; si 83.5 1.1 3.8E-05 45.0 5.2 45 766-813 16-60 (145)
245 3uk6_A RUVB-like 2; hexameric 83.5 2.2 7.5E-05 49.1 8.5 54 757-814 49-106 (368)
246 2qz4_A Paraplegin; AAA+, SPG7, 83.2 3.2 0.00011 45.1 9.2 37 774-816 39-75 (262)
247 3ec2_A DNA replication protein 82.6 8.2 0.00028 39.6 11.6 43 757-799 16-63 (180)
248 2r2a_A Uncharacterized protein 81.7 1.2 4.1E-05 47.8 4.9 23 776-798 7-29 (199)
249 1sxj_B Activator 1 37 kDa subu 81.6 3.5 0.00012 46.1 9.0 24 776-799 44-67 (323)
250 1w4r_A Thymidine kinase; type 81.6 6.2 0.00021 42.3 10.3 35 777-814 23-57 (195)
251 2bjv_A PSP operon transcriptio 81.5 5.1 0.00017 44.0 10.1 47 764-813 19-65 (265)
252 1ofh_A ATP-dependent HSL prote 81.1 3.9 0.00013 45.5 9.1 26 773-798 49-74 (310)
253 2z4s_A Chromosomal replication 81.0 5.6 0.00019 47.6 10.9 27 774-800 130-156 (440)
254 2v1u_A Cell division control p 80.9 3.5 0.00012 47.2 8.9 44 757-800 24-70 (387)
255 3kup_A Chromobox protein homol 80.1 1 3.5E-05 39.9 3.0 38 607-646 23-60 (65)
256 1xwi_A SKD1 protein; VPS4B, AA 79.5 1.7 5.7E-05 49.9 5.5 39 774-817 45-83 (322)
257 4b4t_J 26S protease regulatory 79.2 3.7 0.00013 48.8 8.4 45 773-823 181-225 (405)
258 2zan_A Vacuolar protein sortin 79.2 2.3 7.9E-05 51.0 6.8 42 774-820 167-208 (444)
259 3vfd_A Spastin; ATPase, microt 78.9 2.4 8E-05 49.8 6.6 41 774-820 148-188 (389)
260 1fnn_A CDC6P, cell division co 78.2 14 0.00046 42.4 12.7 42 757-798 22-68 (389)
261 3e2i_A Thymidine kinase; Zn-bi 77.9 4.2 0.00014 44.4 7.6 36 777-815 31-66 (219)
262 1sxj_A Activator 1 95 kDa subu 76.9 25 0.00085 42.8 15.1 36 775-816 78-113 (516)
263 2qby_A CDC6 homolog 1, cell di 76.8 6.3 0.00022 45.0 9.3 44 757-800 25-71 (386)
264 2chq_A Replication factor C sm 75.6 1.7 5.8E-05 48.6 4.0 24 776-799 40-63 (319)
265 3i3c_A Chromobox protein homol 75.0 1.6 5.6E-05 39.7 2.9 37 607-645 33-69 (75)
266 2cvh_A DNA repair and recombin 74.9 9.2 0.00031 40.1 9.3 54 763-822 8-64 (220)
267 2fmm_A Chromobox protein homol 74.7 1.9 6.3E-05 39.2 3.1 37 608-646 27-63 (74)
268 3d8b_A Fidgetin-like protein 1 74.5 4.3 0.00015 47.1 7.1 39 773-817 116-154 (357)
269 1gm5_A RECG; helicase, replica 71.4 13 0.00045 47.9 11.1 99 1069-1169 399-500 (780)
270 3t15_A Ribulose bisphosphate c 70.9 4.4 0.00015 45.7 5.9 34 775-814 37-70 (293)
271 3pvs_A Replication-associated 70.4 12 0.0004 45.0 9.8 24 775-798 51-74 (447)
272 1uaa_A REP helicase, protein ( 70.0 4.5 0.00015 51.0 6.3 78 755-838 2-86 (673)
273 3q6s_A Chromobox protein homol 69.4 2.7 9.4E-05 38.5 3.0 38 607-646 20-57 (78)
274 3hu3_A Transitional endoplasmi 68.9 4.3 0.00015 49.4 5.6 35 772-812 236-270 (489)
275 1sxj_C Activator 1 40 kDa subu 68.9 13 0.00045 42.4 9.4 39 761-799 31-71 (340)
276 3k1j_A LON protease, ATP-depen 68.8 10 0.00036 47.2 9.2 59 761-819 47-116 (604)
277 3te6_A Regulatory protein SIR3 67.6 41 0.0014 38.6 13.1 44 758-801 26-72 (318)
278 3b9p_A CG5977-PA, isoform A; A 67.5 6.5 0.00022 43.8 6.3 36 774-815 54-89 (297)
279 3cf0_A Transitional endoplasmi 66.0 6.7 0.00023 44.2 6.1 36 772-813 47-82 (301)
280 1xp8_A RECA protein, recombina 65.2 14 0.00049 43.2 8.8 56 763-821 61-118 (366)
281 2ce7_A Cell division protein F 64.6 20 0.0007 43.4 10.3 35 774-814 49-83 (476)
282 1d2n_A N-ethylmaleimide-sensit 64.6 16 0.00054 40.2 8.7 23 775-797 65-87 (272)
283 3k1l_B Fancl; UBC, ring, RWD, 64.4 0.91 3.1E-05 52.5 -1.5 49 74-122 307-370 (381)
284 2ct0_A Non-SMC element 1 homol 64.4 2.9 9.8E-05 38.0 2.1 46 75-122 15-61 (74)
285 3kup_A Chromobox protein homol 64.1 3.1 0.00011 36.8 2.2 47 662-712 13-59 (65)
286 1r6b_X CLPA protein; AAA+, N-t 63.9 24 0.00083 44.9 11.4 27 773-799 206-232 (758)
287 1iym_A EL5; ring-H2 finger, ub 63.8 3 0.0001 34.5 2.0 43 76-122 6-52 (55)
288 1vyx_A ORF K3, K3RING; zinc-bi 63.3 0.52 1.8E-05 40.9 -2.9 47 73-122 4-56 (60)
289 2kjq_A DNAA-related protein; s 61.6 18 0.00062 36.5 7.7 27 773-799 35-61 (149)
290 1sxj_E Activator 1 40 kDa subu 60.4 29 0.001 39.3 10.2 40 760-799 19-61 (354)
291 4bbq_A Lysine-specific demethy 59.6 2 6.8E-05 42.0 0.1 38 74-122 6-43 (117)
292 2fmm_A Chromobox protein homol 59.5 2 6.8E-05 39.0 0.1 48 662-713 16-63 (74)
293 1qvr_A CLPB protein; coiled co 58.5 25 0.00086 45.6 10.2 27 774-800 191-217 (854)
294 2zr9_A Protein RECA, recombina 58.4 23 0.00079 41.1 8.9 55 763-820 48-104 (349)
295 2iut_A DNA translocase FTSK; n 57.7 10 0.00035 47.0 6.0 43 773-815 213-256 (574)
296 2kiz_A E3 ubiquitin-protein li 57.3 2.5 8.5E-05 36.8 0.3 48 73-124 12-62 (69)
297 2w58_A DNAI, primosome compone 55.9 16 0.00055 38.0 6.5 25 775-799 55-79 (202)
298 3p7j_A Heterochromatin protein 55.6 7.3 0.00025 36.5 3.2 36 608-645 37-72 (87)
299 1w5s_A Origin recognition comp 54.8 18 0.00063 41.7 7.3 43 757-799 27-77 (412)
300 3oiy_A Reverse gyrase helicase 53.3 37 0.0013 39.4 9.7 98 1069-1167 46-147 (414)
301 1pjr_A PCRA; DNA repair, DNA r 51.8 15 0.00051 46.8 6.4 57 755-817 11-68 (724)
302 1weq_A PHD finger protein 7; s 51.5 9.9 0.00034 35.4 3.3 32 87-121 46-78 (85)
303 1x4j_A Ring finger protein 38; 51.4 2.5 8.5E-05 37.6 -0.7 45 74-122 22-69 (75)
304 2ect_A Ring finger protein 126 50.8 11 0.00037 33.5 3.5 46 74-123 14-62 (78)
305 3hjh_A Transcription-repair-co 50.1 19 0.00066 43.7 6.6 56 774-836 14-70 (483)
306 3dm5_A SRP54, signal recogniti 49.5 34 0.0012 41.1 8.5 50 776-828 102-151 (443)
307 2d8s_A Cellular modulator of i 49.2 3.9 0.00013 37.5 0.3 48 73-122 13-67 (80)
308 3i3c_A Chromobox protein homol 49.0 5.2 0.00018 36.4 1.0 47 662-712 23-69 (75)
309 1u94_A RECA protein, recombina 48.2 34 0.0012 39.8 8.1 52 763-817 50-103 (356)
310 3q6s_A Chromobox protein homol 47.2 7.6 0.00026 35.6 1.8 47 662-712 10-56 (78)
311 2eyq_A TRCF, transcription-rep 47.0 54 0.0018 44.1 10.8 98 1069-1167 634-733 (1151)
312 3kl4_A SRP54, signal recogniti 46.9 55 0.0019 39.1 9.8 34 776-812 99-132 (433)
313 1g5t_A COB(I)alamin adenosyltr 46.8 33 0.0011 36.7 7.1 142 774-942 28-174 (196)
314 2ecm_A Ring finger and CHY zin 46.5 3.5 0.00012 34.0 -0.5 44 75-122 5-52 (55)
315 3nw0_A Non-structural maintena 46.3 5.4 0.00019 44.0 0.9 46 75-122 180-226 (238)
316 3cf2_A TER ATPase, transitiona 46.3 15 0.0005 47.5 5.0 41 774-820 511-551 (806)
317 4dzz_A Plasmid partitioning pr 45.1 76 0.0026 32.6 9.6 37 781-820 9-47 (206)
318 3crv_A XPD/RAD3 related DNA he 44.4 74 0.0025 38.9 10.7 76 1085-1171 391-474 (551)
319 3bh0_A DNAB-like replicative h 42.8 46 0.0016 37.7 8.0 62 762-826 56-117 (315)
320 2zpa_A Uncharacterized protein 41.9 64 0.0022 40.8 9.6 55 754-816 174-228 (671)
321 4b4t_L 26S protease subunit RP 41.7 23 0.00079 42.5 5.4 44 774-823 215-258 (437)
322 3p7j_A Heterochromatin protein 41.7 8.9 0.00031 35.9 1.4 47 662-712 26-72 (87)
323 1v87_A Deltex protein 2; ring- 41.2 4.8 0.00016 38.7 -0.5 34 90-123 58-92 (114)
324 2ecl_A Ring-box protein 2; RNF 41.1 6.8 0.00023 35.6 0.6 28 91-122 46-73 (81)
325 3bgw_A DNAB-like replicative h 41.0 37 0.0013 40.7 7.1 61 762-825 185-245 (444)
326 2lq6_A Bromodomain-containing 40.9 11 0.00036 35.2 1.8 31 73-103 15-49 (87)
327 3u4q_A ATP-dependent helicase/ 40.7 32 0.0011 46.6 7.2 57 753-815 8-67 (1232)
328 1nlf_A Regulatory protein REPA 39.9 1.3E+02 0.0045 32.9 11.0 56 771-827 27-90 (279)
329 2ep4_A Ring finger protein 24; 38.7 7.2 0.00025 34.3 0.3 48 75-126 15-65 (74)
330 4a1f_A DNAB helicase, replicat 38.4 53 0.0018 37.9 7.6 59 763-824 35-93 (338)
331 2z43_A DNA repair and recombin 37.3 90 0.0031 35.4 9.3 54 763-816 95-152 (324)
332 4b4t_M 26S protease regulatory 37.2 15 0.00052 44.0 2.8 44 774-823 215-258 (434)
333 1wp9_A ATP-dependent RNA helic 37.1 1E+02 0.0034 35.7 9.9 95 1069-1169 33-135 (494)
334 2qgz_A Helicase loader, putati 35.9 48 0.0016 37.5 6.6 26 774-799 152-177 (308)
335 1qvr_A CLPB protein; coiled co 35.9 66 0.0023 41.7 8.8 35 775-812 589-623 (854)
336 4a0k_B E3 ubiquitin-protein li 35.7 8.7 0.0003 37.8 0.4 27 92-122 83-109 (117)
337 2zts_A Putative uncharacterize 35.4 66 0.0022 34.1 7.4 53 772-826 28-80 (251)
338 2l0b_A E3 ubiquitin-protein li 34.8 16 0.00055 33.7 2.1 45 74-122 39-86 (91)
339 2q6t_A DNAB replication FORK h 34.5 62 0.0021 38.5 7.6 61 762-824 188-248 (444)
340 2c9o_A RUVB-like 1; hexameric 34.2 26 0.00089 41.9 4.3 60 757-820 42-105 (456)
341 3hr8_A Protein RECA; alpha and 33.5 89 0.0031 36.3 8.5 54 763-819 48-103 (356)
342 2d8t_A Dactylidin, ring finger 33.5 16 0.00055 31.9 1.7 43 75-122 15-58 (71)
343 4b4t_I 26S protease regulatory 33.4 21 0.00071 42.8 3.1 44 774-823 216-259 (437)
344 2ckl_B Ubiquitin ligase protei 33.2 7.4 0.00025 40.1 -0.7 47 74-123 53-100 (165)
345 3dpl_R Ring-box protein 1; ubi 32.9 8.9 0.00031 37.0 -0.1 28 91-122 71-98 (106)
346 4b4t_K 26S protease regulatory 32.7 21 0.00073 42.6 3.1 42 774-821 206-247 (428)
347 2r44_A Uncharacterized protein 32.7 29 0.00098 39.2 4.1 36 763-798 35-70 (331)
348 1lv7_A FTSH; alpha/beta domain 31.8 57 0.0019 35.3 6.2 36 774-815 45-80 (257)
349 2px0_A Flagellar biosynthesis 31.5 1.2E+02 0.0039 34.2 8.8 37 774-812 105-141 (296)
350 3u4q_B ATP-dependent helicase/ 31.0 63 0.0021 43.4 7.6 52 777-829 5-56 (1166)
351 2kn9_A Rubredoxin; metalloprot 30.5 24 0.00083 32.5 2.4 19 105-124 53-71 (81)
352 3co5_A Putative two-component 30.5 28 0.00096 34.4 3.1 23 772-794 25-47 (143)
353 3lrq_A E3 ubiquitin-protein li 30.2 7.5 0.00026 36.7 -1.1 46 75-123 22-68 (100)
354 2dhr_A FTSH; AAA+ protein, hex 30.0 3.3E+02 0.011 33.0 13.0 33 775-813 65-97 (499)
355 3cmu_A Protein RECA, recombina 29.9 85 0.0029 44.5 8.6 57 762-821 718-776 (2050)
356 2ea6_A Ring finger protein 4; 29.5 11 0.00037 32.4 -0.2 44 75-122 15-65 (69)
357 4b4t_H 26S protease regulatory 29.4 20 0.0007 43.2 2.2 45 773-823 242-286 (467)
358 2ecn_A Ring finger protein 141 29.1 13 0.00043 32.3 0.2 44 75-123 15-58 (70)
359 3cmu_A Protein RECA, recombina 29.0 77 0.0026 45.0 7.9 53 771-828 1424-1476(2050)
360 4ddu_A Reverse gyrase; topoiso 28.8 1E+02 0.0035 41.2 8.9 98 1069-1168 103-205 (1104)
361 2i1q_A DNA repair and recombin 28.4 1.4E+02 0.0049 33.4 9.0 55 762-816 85-153 (322)
362 2r6a_A DNAB helicase, replicat 28.1 98 0.0033 36.9 7.9 59 763-823 192-250 (454)
363 2ysl_A Tripartite motif-contai 28.0 25 0.00085 30.5 2.0 46 75-122 20-66 (73)
364 3nhm_A Response regulator; pro 27.7 2.8E+02 0.0097 25.6 9.8 98 1081-1186 21-123 (133)
365 1gku_B Reverse gyrase, TOP-RG; 27.3 95 0.0032 41.3 8.2 69 1069-1137 81-155 (1054)
366 2dr3_A UPF0273 protein PH0284; 26.9 96 0.0033 32.7 6.9 52 771-825 20-71 (247)
367 2csy_A Zinc finger protein 183 26.6 19 0.00065 32.2 1.0 46 74-124 14-60 (81)
368 3cmw_A Protein RECA, recombina 26.6 92 0.0031 43.5 8.0 55 763-820 719-775 (1706)
369 3hws_A ATP-dependent CLP prote 26.1 72 0.0025 36.6 6.0 36 773-814 50-85 (363)
370 4fcw_A Chaperone protein CLPB; 26.0 48 0.0017 36.6 4.4 35 775-812 48-82 (311)
371 3cf2_A TER ATPase, transitiona 25.7 41 0.0014 43.5 4.1 41 774-820 238-278 (806)
372 1bor_A Transcription factor PM 25.6 48 0.0017 27.6 3.3 43 74-123 5-47 (56)
373 3ber_A Probable ATP-dependent 25.6 4E+02 0.014 28.4 11.7 131 1069-1211 90-236 (249)
374 2xeu_A Ring finger protein 4; 25.4 8.8 0.0003 32.4 -1.5 44 75-122 3-53 (64)
375 2k1p_A Zinc finger RAN-binding 25.4 24 0.00081 26.9 1.1 13 110-122 3-15 (33)
376 2yur_A Retinoblastoma-binding 25.3 30 0.001 30.4 2.0 47 74-122 14-61 (74)
377 2gxq_A Heat resistant RNA depe 25.3 1.6E+02 0.0056 30.0 8.1 93 1069-1167 48-152 (207)
378 3m6a_A ATP-dependent protease 25.1 1.6E+02 0.0054 36.1 9.1 26 773-798 107-132 (543)
379 3i42_A Response regulator rece 24.7 1.7E+02 0.0056 27.1 7.4 95 1085-1187 25-124 (127)
380 3ng2_A RNF4, snurf, ring finge 24.7 11 0.00039 32.6 -0.9 45 75-123 10-61 (71)
381 2ecy_A TNF receptor-associated 24.3 16 0.00054 31.4 -0.0 44 75-122 15-59 (66)
382 3sxu_A DNA polymerase III subu 23.7 74 0.0025 32.5 4.8 40 1070-1109 22-61 (150)
383 2djb_A Polycomb group ring fin 23.3 25 0.00086 30.7 1.1 48 74-125 14-62 (72)
384 1ojl_A Transcriptional regulat 23.2 1E+02 0.0036 34.5 6.5 47 767-816 18-64 (304)
385 1q57_A DNA primase/helicase; d 23.2 86 0.0029 37.8 6.2 59 763-823 231-289 (503)
386 3l11_A E3 ubiquitin-protein li 22.8 33 0.0011 32.8 1.9 45 74-123 14-60 (115)
387 1chc_A Equine herpes virus-1 r 22.7 14 0.00049 31.7 -0.6 46 75-124 5-51 (68)
388 3gx8_A Monothiol glutaredoxin- 22.6 3.8E+02 0.013 25.7 9.6 71 1078-1151 7-86 (121)
389 3ly5_A ATP-dependent RNA helic 22.6 4.4E+02 0.015 28.4 11.4 131 1069-1211 101-251 (262)
390 2w0m_A SSO2452; RECA, SSPF, un 22.1 1.3E+02 0.0045 31.1 6.7 54 763-819 11-65 (235)
391 2lk0_A RNA-binding protein 5; 22.1 22 0.00075 26.9 0.4 12 111-122 3-14 (32)
392 2ct2_A Tripartite motif protei 22.0 20 0.00067 32.3 0.1 46 75-122 15-65 (88)
393 3ipz_A Monothiol glutaredoxin- 21.9 2.5E+02 0.0085 26.3 8.0 66 1077-1145 8-79 (109)
394 1dx8_A Rubredoxin; electron tr 21.4 44 0.0015 30.0 2.2 17 107-124 35-51 (70)
395 2ecw_A Tripartite motif-contai 21.4 22 0.00075 31.6 0.3 48 75-123 19-69 (85)
396 1s24_A Rubredoxin 2; electron 21.2 33 0.0011 32.1 1.4 19 105-124 61-79 (87)
397 1e8j_A Rubredoxin; iron-sulfur 21.1 70 0.0024 26.9 3.3 15 107-122 31-45 (52)
398 1hqc_A RUVB; extended AAA-ATPa 21.1 1.2E+02 0.0042 33.6 6.5 25 774-798 38-62 (324)
399 3pfi_A Holliday junction ATP-d 20.9 1.3E+02 0.0045 33.7 6.8 41 757-797 34-78 (338)
400 2oca_A DAR protein, ATP-depend 20.8 1.2E+02 0.0041 36.2 6.8 59 1069-1127 138-199 (510)
401 4ayc_A E3 ubiquitin-protein li 20.4 21 0.00072 35.6 -0.1 42 76-122 54-96 (138)
402 3zyw_A Glutaredoxin-3; metal b 20.4 2.8E+02 0.0097 26.2 8.0 65 1078-1145 7-77 (111)
403 1u6t_A SH3 domain-binding glut 20.4 1.4E+02 0.0047 29.4 5.8 45 1090-1136 2-53 (121)
404 2egp_A Tripartite motif-contai 20.4 53 0.0018 28.8 2.6 48 75-123 12-63 (79)
405 1um8_A ATP-dependent CLP prote 20.4 1.1E+02 0.0037 35.2 6.0 25 774-798 72-96 (376)
406 2pl3_A Probable ATP-dependent 20.0 3.9E+02 0.013 28.0 9.9 60 1069-1128 72-140 (236)
No 1
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.3e-103 Score=1012.62 Aligned_cols=670 Identities=41% Similarity=0.680 Sum_probs=530.1
Q ss_pred ceeEEEEEEecCccccccccCCHHHHHHH-HHHHHHHHHHhhCcc---------cc--------------cchhhhccch
Q 042857 609 AVSYEFLVKWVGKSNIHNSWIPESQLKVL-AKRKLENYKAKYGTT---------VI--------------NICDERWKQP 664 (1404)
Q Consensus 609 ~~~~eylVKw~~~Sy~h~~Wv~e~~l~~~-~~~~l~~~~~k~~~~---------~~--------------~~~~~e~~~~ 664 (1404)
.+..||||||+|+||+||+|+|++.|... +.+++.||.+++... .. ....++|..|
T Consensus 69 ~~~~eylvKWkg~s~~hntWe~~e~L~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~e~~e~~~~~~e~~~~~~~~~~~v 148 (800)
T 3mwy_W 69 KENYEFLIKWTDESHLHNTWETYESIGQVRGLKRLDNYCKQFIIEDQQVRLDPYVTAEDIEIMDMERERRLDEFEEFHVP 148 (800)
T ss_dssp HHHCEEEEECSSSCTTSCEEECHHHHCSCBTTHHHHHHHHHHTHHHHHHTCSTTSCHHHHHHHHHHHHHHHHHHTTTTCE
T ss_pred cCceEEEEEeCCcceeeccccCHHHHhhcchHHHHHHHHHHhhhHHHHHhcCCCCCHHHHHHHhhhhhhhccccccccce
Confidence 44689999999999999999999999642 345677777665211 00 0113679999
Q ss_pred hhhhhhccC----CCCcceeeeccCCCCCCcccccCCCchHHHhhHHHHHHHHHHHHhhhccccCCCCCCCCCCCCcchh
Q 042857 665 QRVISLRSS----KDGTREAFVKWTGLPYDECTWEKLDEPALEKYSHLTDLFVQFERQTLKKDASEDELPRGKGDCQQSE 740 (1404)
Q Consensus 665 eRii~~r~~----~~~~~eylVKW~gL~Y~~~TWE~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 740 (1404)
+|||+++.. ..+..+|||||++|+|++||||.... .....+..++.|.............. ... ...+.
T Consensus 149 eRii~~~~~~~~~~~~~~~yLvKW~~L~y~~~tWe~~~~-~~~~~~~~i~~~~~r~~~~~~~~~~~-~~~-----~~~~~ 221 (800)
T 3mwy_W 149 ERIIDSQRASLEDGTSQLQYLVKWRRLNYDEATWENATD-IVKLAPEQVKHFQNRENSKILPQYSS-NYT-----SQRPR 221 (800)
T ss_dssp EEECCCCCEECTTSCEECBCCEEETTSCSTTCBCCBHHH-HTTTCHHHHHHHHHTTTCTTCSTTCC-CCC-----SCCCC
T ss_pred eEEEeecccccCCCCCceEEEEEecCCCcccccccchhh-hhhhhHHHHHHHHHhhhcccCCcchh-ccc-----ccCCc
Confidence 999998852 33567999999999999999996321 22234556666654322111000000 000 01223
Q ss_pred hhhhccCCccCCCCCCCHHHHHHHHHHHHhhccCCcEEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEeCCCChHHH
Q 042857 741 IVALTEQPEELKGGALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLSTMPNW 820 (1404)
Q Consensus 741 ~~~l~~qP~~l~g~~L~pyQlegVnwL~~~~~~~~~~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP~Sll~nW 820 (1404)
+..+..+|+++.+++|+|||++||+||+..|..+.++||||+||||||+|+|+++.+++......+|+|||||.+++.||
T Consensus 222 ~~~~~~~p~~~~~~~Lr~yQ~egv~~l~~~~~~~~~~ILademGlGKT~~ai~~i~~l~~~~~~~~~~LIV~P~sll~qW 301 (800)
T 3mwy_W 222 FEKLSVQPPFIKGGELRDFQLTGINWMAFLWSKGDNGILADEMGLGKTVQTVAFISWLIFARRQNGPHIIVVPLSTMPAW 301 (800)
T ss_dssp CCCCSSCCTTCCSSCCCTHHHHHHHHHHHHHTTTCCEEECCCTTSSTTHHHHHHHHHHHHHHSCCSCEEEECCTTTHHHH
T ss_pred ccccccCCCccCCCCcCHHHHHHHHHHHHHhhcCCCEEEEeCCCcchHHHHHHHHHHHHHhcCCCCCEEEEECchHHHHH
Confidence 55677889999999999999999999999999999999999999999999999999998777888999999999999999
Q ss_pred HHHHHHHCCCCcEEEEecchhHHHHHHHhhhccCCCCccccccCCCCceEEEeeHHHHHhhhccccCCCceEEEEccccc
Q 042857 821 LAEFALWAPNLNVVEYHGCAKARAIIRQYEWHASDPDNLNKKTSSYKFNVLLTTYEMILADSSHLRGVPWEVLVVDEGHR 900 (1404)
Q Consensus 821 ~rEf~kw~P~l~Vvvy~G~~~~R~~ir~~E~~~~~~~~~~~~~~~~kfdVvITTYe~l~~d~~~L~~i~w~lVIVDEAHr 900 (1404)
.+||.+|+|++++++|+|+...+..++.+++...... ......+++|+||||+++..+...|..+.|++|||||||+
T Consensus 302 ~~E~~~~~p~~~v~~~~g~~~~r~~~~~~~~~~~~~~---~~~~~~~~dvvitTy~~l~~~~~~l~~~~w~~vIvDEaH~ 378 (800)
T 3mwy_W 302 LDTFEKWAPDLNCICYMGNQKSRDTIREYEFYTNPRA---KGKKTMKFNVLLTTYEYILKDRAELGSIKWQFMAVDEAHR 378 (800)
T ss_dssp HHHHHHHSTTCCEEECCCSSHHHHHHHHHHSCSCC--------CCCCCSEEEECTTHHHHTHHHHHTSEEEEEEETTGGG
T ss_pred HHHHHHHCCCceEEEEeCCHHHHHHHHHHHhhccccc---cccccccCCEEEecHHHHHhhHHHHhcCCcceeehhhhhh
Confidence 9999999999999999999999999999887653221 1234568999999999999999999999999999999999
Q ss_pred cCCCccHHHHHHhhcccccEEEEeccCCCCChHHHHHHhhhhCCCCCCChhHHHHHhccccchHHHHHHHHhhhhhhhhh
Q 042857 901 LKNSGSKLFSLLNSFSFQHRVLLTGTPLQNNIGEMYNLLNFLQPASFPSLSSFEEKFNDLTTTQKVEELKKLVAPHMLRR 980 (1404)
Q Consensus 901 lKN~~Sk~~~~L~~l~~~~rLLLTGTPlqNnl~EL~sLL~fL~P~~f~s~~~F~~~f~d~~~~~~i~~L~~lL~p~mLRR 980 (1404)
+||..+++++++..+.+.+||+|||||++|++.|||+||+||.|+.|.....|............+..|+.++.|+|+||
T Consensus 379 lkn~~s~~~~~l~~l~~~~rl~LTgTPiqN~l~el~~ll~fL~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~p~~lRR 458 (800)
T 3mwy_W 379 LKNAESSLYESLNSFKVANRMLITGTPLQNNIKELAALVNFLMPGRFTIDQEIDFENQDEEQEEYIHDLHRRIQPFILRR 458 (800)
T ss_dssp GCCSSSHHHHHHTTSEEEEEEEECSCCCSSCSHHHHHHHHHHCSCCC---------CCTTHHHHHHHHHHHTTGGGEEEC
T ss_pred hcCchhHHHHHHHHhhhccEEEeeCCcCCCCHHHHHHHHHHhCccccCchhhhcccccchhHHHHHHHHHHHHhHHHhhh
Confidence 99999999999999999999999999999999999999999999999888777655544455567889999999999999
Q ss_pred hHhhhhhcCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHhCCCCCCCCCCC------
Q 042857 981 LKKDAMQNIPPKTERMVPVELSSIQAEYYRAMLTKNYQILRNIGKGVAQQSMLNIVMQLRKVCNHPYLIPGTEP------ 1054 (1404)
Q Consensus 981 ~K~dV~~~LPpk~e~iV~V~LS~~Qk~~Y~~il~~n~~~L~~~~kg~~~~sllnilm~LRK~cnHP~L~~~~e~------ 1054 (1404)
++.++...||++.+.++.|+|++.|+.+|+.++.+++..+.... .....++++++++||++|+|||++...+.
T Consensus 459 ~k~dv~~~LP~k~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~~~-~~~~~~~l~~l~~Lrk~~~hp~l~~~~~~~~~~~~ 537 (800)
T 3mwy_W 459 LKKDVEKSLPSKTERILRVELSDVQTEYYKNILTKNYSALTAGA-KGGHFSLLNIMNELKKASNHPYLFDNAEERVLQKF 537 (800)
T ss_dssp CGGGGTTTSCCEEEEEEEECCCHHHHHHHHHHHHHCCC-----------CTHHHHHHHHHHHHHCGGGSSSHHHHHCCCC
T ss_pred hHHhhhhccCCcEEEEEEeCCCHHHHHHHHHHHHHHHHHHhhcc-ccchhhHHHHHHHHHHHhcChhhhcchHHHHHHhc
Confidence 99999999999999999999999999999999988766554332 22345789999999999999999865321
Q ss_pred --CCCcHHHHHHHHHhhhhHHHHHHHHHHHHHHcCCeEEEEecchhHHHHHHHHHhhhcCCceEEEEeCCCCHHHHHHHH
Q 042857 1055 --DSGSVEFLHEMRIKASAKLTLLHSMLKVLYKEGHRVLIFSQMTKLLDILEDYLNIEFGPKTYERVDGSVSVGDRQAAI 1132 (1404)
Q Consensus 1055 --~~~~~e~l~~~~i~~SgKl~~L~kLL~kl~~~G~KVLIFSq~~~~LDiLed~L~~~f~g~~y~rLdGs~s~~eRq~~I 1132 (1404)
...........++..|+|+.+|.++|..+.+.|+||||||||+.++++|+++|... |+.|.+|+|+++..+|+++|
T Consensus 538 ~~~~~~~~~~~~~l~~~s~K~~~L~~lL~~~~~~g~kvLIFsq~~~~ld~L~~~L~~~--g~~~~~i~G~~~~~eR~~~i 615 (800)
T 3mwy_W 538 GDGKMTRENVLRGLIMSSGKMVLLDQLLTRLKKDGHRVLIFSQMVRMLDILGDYLSIK--GINFQRLDGTVPSAQRRISI 615 (800)
T ss_dssp ----CCSHHHHHHHHHTCHHHHHHHHHHHHHTTTTCCEEEEESCHHHHHHHHHHHHHH--TCCCEEESTTSCHHHHHHHH
T ss_pred ccccccHHHHHHHhhhcChHHHHHHHHHHHHhhCCCeEEEEechHHHHHHHHHHHHhC--CCCEEEEeCCCCHHHHHHHH
Confidence 11122334455678999999999999999999999999999999999999999977 89999999999999999999
Q ss_pred HHHhcCCC-ceEEEeecccccccccccCCCEEEEEcCCCCHhHHHHHHHhhhccCCCCcEEEEEEeeCCCHHHHHHHHHH
Q 042857 1133 TRFNQDKS-RFVFLLSTRSCGLGINLATADTVIIYDSDFNPHADIQAMNRAHRIGQSKRLLVYRLVVRASVEERILQLAK 1211 (1404)
Q Consensus 1133 d~Fn~~~s-~~VfLLSTrAgG~GINL~~AdtVIi~DsdWNP~~d~QAigRahRiGQ~k~V~VYrLvt~~TvEE~Ilq~a~ 1211 (1404)
++|++++. .++||+||++||+||||++|++||+||++|||+.++||+||+||+||+++|.||+|++.+|+||+|++++.
T Consensus 616 ~~F~~~~~~~~v~LlSt~agg~GlNL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vyrlv~~~TiEe~i~~~~~ 695 (800)
T 3mwy_W 616 DHFNSPDSNDFVFLLSTRAGGLGINLMTADTVVIFDSDWNPQADLQAMARAHRIGQKNHVMVYRLVSKDTVEEEVLERAR 695 (800)
T ss_dssp HTTSSTTCSCCCEEEEHHHHTTTCCCTTCCEEEESSCCSCSHHHHHHHTTTSCSSCCSCEEEEEEEETTSHHHHHHHHHH
T ss_pred HHhhCCCCCceEEEEecccccCCCCccccceEEEecCCCChhhHHHHHHHHHhcCCCceEEEEEEecCCCHHHHHHHHHH
Confidence 99998664 67999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhHHHhcCC------------CChHHHHHHHHhhHHHHhcCCCCCCCCCCCCCcccHHHHHHHHHHHhhhcCCCCC
Q 042857 1212 KKLMLDQLFVNKS------------GSQKEVEDILRWGTEELFNDSPGINGKDMGENNTSIEEAVRDLEQKHRKRGGGLG 1279 (1404)
Q Consensus 1212 ~Kl~L~~~vv~~~------------~s~~eledilk~Ga~~Lf~~~~~~~~~d~~~~~~~~~e~i~~~e~~~~~~~~~~~ 1279 (1404)
+|+.|++++++.. .+..++.+||++|+.+||...+. +..
T Consensus 696 ~K~~l~~~vi~~~~~~~~~~~~~~~~~~~el~~ll~~g~~~~~~~~~~-------------~~~---------------- 746 (800)
T 3mwy_W 696 KKMILEYAIISLGVTDGNKYTKKNEPNAGELSAILKFGAGNMFTATDN-------------QKK---------------- 746 (800)
T ss_dssp HHTTSCC----------------CCCCHHHHHHHHSSCSSSSCCSHHH-------------HHH----------------
T ss_pred HHHHHHHHHHccCcccccccccccCCCHHHHHHHHHcchHhhhhccCc-------------ccc----------------
Confidence 9999999988632 35678999999999999964310 000
Q ss_pred cccccccCCCCCccccCHHHHHHhhccccccCCCcccccc-ccccccccCccEEEec
Q 042857 1280 DVYQDKCTEGSTKIVWDENAIARLLDRSNLQSGSTDLAEG-DLENDMLGSVKATEWN 1335 (1404)
Q Consensus 1280 ~~~~~~~~~~~~~~~~d~~~~~~ll~r~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 1335 (1404)
+.+..|+.+|+|++......+..+. ...+++|+.|+++.|.
T Consensus 747 ---------------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 (800)
T 3mwy_W 747 ---------------LEDLNLDDVLNHAEDHVTTPDLGESHLGGEEFLKQFEVTDYK 788 (800)
T ss_dssp ---------------HHTCCHHHHHHHCEECCCSCCCCCCEESCHHHHHTTC-----
T ss_pred ---------------ccccCHHHHHHhhhhccccccccccccchHHHHhhceeeecc
Confidence 0112378889888754432222221 2246799999998886
No 2
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=9.5e-73 Score=712.88 Aligned_cols=459 Identities=31% Similarity=0.518 Sum_probs=386.8
Q ss_pred CCCCHHHHHHHHHHHHhh-----ccCCcEEEEcCCCchHHHHHHHHHHHHHhhccC----CCcEEEEeCCCChHHHHHHH
Q 042857 754 GALFPHQLEALNWLRKCW-----HKSKNVILADEMGLGKTVSACAFISSLYCEFKA----KLPCLVLVPLSTMPNWLAEF 824 (1404)
Q Consensus 754 ~~L~pyQlegVnwL~~~~-----~~~~~~ILADEMGLGKTiqaIa~L~~L~~~~~~----~gP~LIVvP~Sll~nW~rEf 824 (1404)
..|+|||++||+||+.++ ..+.++||||+||||||+|+|+++..+...... .+++|||||.+++.||.+||
T Consensus 54 ~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~i~~i~~l~~~~~~~~p~~~~~LiV~P~sll~qW~~E~ 133 (644)
T 1z3i_X 54 KVLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPDCKPEIDKVIVVSPSSLVRNWYNEV 133 (644)
T ss_dssp TTCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCCTTSSCSCSCEEEEECHHHHHHHHHHH
T ss_pred hcccHHHHHHHHHHHHhhhcccccCCCCeEeeeCCCchHHHHHHHHHHHHHHhCccccCCCCcEEEEecHHHHHHHHHHH
Confidence 479999999999999876 456789999999999999999999998765542 34699999999999999999
Q ss_pred HHHCCC-CcEEEEecchh-HH-HHHHHhhhccCCCCccccccCCCCceEEEeeHHHHHhhhccccCCCceEEEEcccccc
Q 042857 825 ALWAPN-LNVVEYHGCAK-AR-AIIRQYEWHASDPDNLNKKTSSYKFNVLLTTYEMILADSSHLRGVPWEVLVVDEGHRL 901 (1404)
Q Consensus 825 ~kw~P~-l~Vvvy~G~~~-~R-~~ir~~E~~~~~~~~~~~~~~~~kfdVvITTYe~l~~d~~~L~~i~w~lVIVDEAHrl 901 (1404)
.+|+|. +.++.++|+.. .+ ..+..+ ... ......++|+||||+++..+...|....|++||+||||++
T Consensus 134 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~--~~~-------~~~~~~~~vvi~ty~~l~~~~~~l~~~~~~~vI~DEaH~i 204 (644)
T 1z3i_X 134 GKWLGGRVQPVAIDGGSKDEIDSKLVNF--ISQ-------QGMRIPTPILIISYETFRLHAEVLHKGKVGLVICDEGHRL 204 (644)
T ss_dssp HHHHGGGCCEEEECSSCHHHHHHHHHHH--HCC-------CSSCCSCCEEEEEHHHHHHHTTTTTTSCCCEEEETTGGGC
T ss_pred HHHcCCCeeEEEEeCCCHHHHHHHHHHH--HHh-------cCCCCCCcEEEeeHHHHHhhHHHhhcCCccEEEEECceec
Confidence 999875 77777766433 22 122221 111 1112357899999999999999999999999999999999
Q ss_pred CCCccHHHHHHhhcccccEEEEeccCCCCChHHHHHHhhhhCCCCCCChhHHHHHhcccc---------------chHHH
Q 042857 902 KNSGSKLFSLLNSFSFQHRVLLTGTPLQNNIGEMYNLLNFLQPASFPSLSSFEEKFNDLT---------------TTQKV 966 (1404)
Q Consensus 902 KN~~Sk~~~~L~~l~~~~rLLLTGTPlqNnl~EL~sLL~fL~P~~f~s~~~F~~~f~d~~---------------~~~~i 966 (1404)
||..++.++++..+.+.+||+|||||+||++.|||+|++||.|+.|++...|...|..+. ....+
T Consensus 205 kn~~~~~~~al~~l~~~~rl~LTgTPiqN~l~El~sll~fl~p~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~~~~~ 284 (644)
T 1z3i_X 205 KNSDNQTYLALNSMNAQRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAQEFKKRFEIPILKGRDADASDKDRAAGEQKL 284 (644)
T ss_dssp CTTCHHHHHHHHHHCCSEEEEECSSCSGGGGGGCHHHHHHHHHHHHCCHHHHHHHTHHHHHHHHSTTCCSHHHHHHHHHH
T ss_pred CChhhHHHHHHHhcccCcEEEEecCcccCCHHHHHHHHHhhCCCcCCCHHHHHHhhcchhhhcCCcCCCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999996431 12457
Q ss_pred HHHHHhhhhhhhhhhHhhhhhcCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHhCCC
Q 042857 967 EELKKLVAPHMLRRLKKDAMQNIPPKTERMVPVELSSIQAEYYRAMLTKNYQILRNIGKGVAQQSMLNIVMQLRKVCNHP 1046 (1404)
Q Consensus 967 ~~L~~lL~p~mLRR~K~dV~~~LPpk~e~iV~V~LS~~Qk~~Y~~il~~n~~~L~~~~kg~~~~sllnilm~LRK~cnHP 1046 (1404)
.+|+.++.|||+||++.++...||++.+.++.|+|++.|+++|+.++...... .....+......+..++.||++|+||
T Consensus 285 ~~L~~~l~~~~lRR~k~~v~~~LP~k~~~~v~~~ls~~q~~lY~~~~~~~~~~-~~~~~g~~~~~~l~~l~~Lrk~c~hp 363 (644)
T 1z3i_X 285 QELISIVNRCLIRRTSDILSKYLPVKIEQVVCCNLTPLQKELYKLFLKQAKPV-ESLQTGKISVSSLSSITSLKKLCNHP 363 (644)
T ss_dssp HHHHHHHHHHEECCCGGGGGGTSCCEEEEEEEECCCHHHHHHHHHHHHHHCGG-GSSCTTCCCHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHhhHHhHhhhCCCceEEEEEeCCCHHHHHHHHHHHHHHHHH-HHHhcCccchhHHHHHHHHHHHhCCH
Confidence 78999999999999999999999999999999999999999999988754321 11122333456788899999999999
Q ss_pred CCCCCC-----CCCCCcHHHH------HHHHHhhhhHHHHHHHHHHHHHH-cCCeEEEEecchhHHHHHHHHHhhhcCCc
Q 042857 1047 YLIPGT-----EPDSGSVEFL------HEMRIKASAKLTLLHSMLKVLYK-EGHRVLIFSQMTKLLDILEDYLNIEFGPK 1114 (1404)
Q Consensus 1047 ~L~~~~-----e~~~~~~e~l------~~~~i~~SgKl~~L~kLL~kl~~-~G~KVLIFSq~~~~LDiLed~L~~~f~g~ 1114 (1404)
+++... +......+.+ .......|+|+.+|..+|..+.. .|+|+||||+++.++++|+.+|... ++
T Consensus 364 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~l~~ll~~~~~~~~~k~lIFs~~~~~~~~l~~~l~~~--g~ 441 (644)
T 1z3i_X 364 ALIYEKCLTGEEGFDGALDLFPQNYSTKAVEPQLSGKMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRNR--RY 441 (644)
T ss_dssp HHHHHHHHHTCTTCTTGGGTSCSSCCSSSCCGGGSHHHHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHHHHHH--TC
T ss_pred HHHHHHHhcccchhhhHHhhccccccccccCcccChHHHHHHHHHHHHhhcCCCEEEEEEccHHHHHHHHHHHHHC--CC
Confidence 986210 0000000000 00012469999999999998875 5899999999999999999999977 88
Q ss_pred eEEEEeCCCCHHHHHHHHHHHhcCCC-ceEEEeecccccccccccCCCEEEEEcCCCCHhHHHHHHHhhhccCCCCcEEE
Q 042857 1115 TYERVDGSVSVGDRQAAITRFNQDKS-RFVFLLSTRSCGLGINLATADTVIIYDSDFNPHADIQAMNRAHRIGQSKRLLV 1193 (1404)
Q Consensus 1115 ~y~rLdGs~s~~eRq~~Id~Fn~~~s-~~VfLLSTrAgG~GINL~~AdtVIi~DsdWNP~~d~QAigRahRiGQ~k~V~V 1193 (1404)
.|.++||+++..+|++++++|+++.. .++||+||++||+||||+.|++||+||++|||..+.||+||+||+||+++|.|
T Consensus 442 ~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~g~Glnl~~a~~Vi~~d~~wnp~~~~Qa~gR~~R~Gq~~~v~v 521 (644)
T 1z3i_X 442 LYVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYI 521 (644)
T ss_dssp CEEEECSSCCHHHHHHHHHHHHSTTCCCCEEEEEGGGSCTTCCCTTEEEEEECSCCSSHHHHHHHHTTSSSTTCCSCEEE
T ss_pred CEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEecccccCCcccccCCEEEEECCCCCccHHHHHHHhhhhcCCCCceEE
Confidence 99999999999999999999998765 57999999999999999999999999999999999999999999999999999
Q ss_pred EEEeeCCCHHHHHHHHHHHHHhhhHHHhcCC
Q 042857 1194 YRLVVRASVEERILQLAKKKLMLDQLFVNKS 1224 (1404)
Q Consensus 1194 YrLvt~~TvEE~Ilq~a~~Kl~L~~~vv~~~ 1224 (1404)
|+|++.+|+||+|++++..|..|...+++..
T Consensus 522 ~~lv~~~tiEe~i~~~~~~K~~l~~~v~~~~ 552 (644)
T 1z3i_X 522 YRLLSTGTIEEKILQRQAHKKALSSCVVDEE 552 (644)
T ss_dssp EEEEETTSHHHHHHHHHHHHHHTSCCCCSCS
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHHhcCc
Confidence 9999999999999999999999998888753
No 3
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=100.00 E-value=2.5e-68 Score=651.55 Aligned_cols=442 Identities=30% Similarity=0.538 Sum_probs=384.9
Q ss_pred CccCCCCCCCHHHHHHHHHHHHhhccCCcEEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEeCCCChHHHHHHHHHH
Q 042857 748 PEELKGGALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLSTMPNWLAEFALW 827 (1404)
Q Consensus 748 P~~l~g~~L~pyQlegVnwL~~~~~~~~~~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP~Sll~nW~rEf~kw 827 (1404)
|..+. ..|+|||.+|+.||...+..+.++||||+||+|||+++++++..+... ...+|+|||||.+++.||.+||++|
T Consensus 31 p~~~~-~~L~~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~ai~~i~~~~~~-~~~~~~LIv~P~~l~~qw~~e~~~~ 108 (500)
T 1z63_A 31 PYNIK-ANLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVFSDAKKE-NELTPSLVICPLSVLKNWEEELSKF 108 (500)
T ss_dssp CCSCS-SCCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHHHHHHHHHT-TCCSSEEEEECSTTHHHHHHHHHHH
T ss_pred Chhhh-ccchHHHHHHHHHHHHHhhCCCCEEEEeCCCCcHHHHHHHHHHHHHhc-CCCCCEEEEccHHHHHHHHHHHHHH
Confidence 44444 589999999999999888889999999999999999999999988644 3456999999999999999999999
Q ss_pred CCCCcEEEEecchhHHHHHHHhhhccCCCCccccccCCCCceEEEeeHHHHHhhhccccCCCceEEEEccccccCCCccH
Q 042857 828 APNLNVVEYHGCAKARAIIRQYEWHASDPDNLNKKTSSYKFNVLLTTYEMILADSSHLRGVPWEVLVVDEGHRLKNSGSK 907 (1404)
Q Consensus 828 ~P~l~Vvvy~G~~~~R~~ir~~E~~~~~~~~~~~~~~~~kfdVvITTYe~l~~d~~~L~~i~w~lVIVDEAHrlKN~~Sk 907 (1404)
+|++++.+|+|.... .....++|+|+||+.+..+.. +....|++|||||||+++|..++
T Consensus 109 ~~~~~v~~~~g~~~~--------------------~~~~~~~ivi~t~~~l~~~~~-l~~~~~~~vIvDEaH~~kn~~~~ 167 (500)
T 1z63_A 109 APHLRFAVFHEDRSK--------------------IKLEDYDIILTTYAVLLRDTR-LKEVEWKYIVIDEAQNIKNPQTK 167 (500)
T ss_dssp CTTSCEEECSSSTTS--------------------CCGGGSSEEEEEHHHHTTCHH-HHTCCEEEEEEETGGGGSCTTSH
T ss_pred CCCceEEEEecCchh--------------------ccccCCcEEEeeHHHHhccch-hcCCCcCEEEEeCccccCCHhHH
Confidence 999999999886521 112367899999999988765 77789999999999999999999
Q ss_pred HHHHHhhcccccEEEEeccCCCCChHHHHHHhhhhCCCCCCChhHHHHHhccc---cchHHHHHHHHhhhhhhhhhhHhh
Q 042857 908 LFSLLNSFSFQHRVLLTGTPLQNNIGEMYNLLNFLQPASFPSLSSFEEKFNDL---TTTQKVEELKKLVAPHMLRRLKKD 984 (1404)
Q Consensus 908 ~~~~L~~l~~~~rLLLTGTPlqNnl~EL~sLL~fL~P~~f~s~~~F~~~f~d~---~~~~~i~~L~~lL~p~mLRR~K~d 984 (1404)
.++++..+...++|+|||||++|++.|||++++||.|+.|++...|...|... ........|+.++.|+++||++.+
T Consensus 168 ~~~~l~~l~~~~~l~LTaTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~l~~~l~~~~lrr~k~~ 247 (500)
T 1z63_A 168 IFKAVKELKSKYRIALTGTPIENKVDDLWSIMTFLNPGLLGSYSEFKSKFATPIKKGDNMAKEELKAIISPFILRRTKYD 247 (500)
T ss_dssp HHHHHHTSCEEEEEEECSSCSTTCHHHHHHHHHHHSTTTTCCHHHHHTTTHHHHHTTCHHHHHHHHHHHTTTEECCCTTC
T ss_pred HHHHHHhhccCcEEEEecCCCCCCHHHHHHHHHHhCCCcCCCHHHHHHHhccccccccHHHHHHHHHHHhhHeeeecccc
Confidence 99999999999999999999999999999999999999999999999888653 234556789999999999999976
Q ss_pred --hhhcCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCcHHHH
Q 042857 985 --AMQNIPPKTERMVPVELSSIQAEYYRAMLTKNYQILRNIGKGVAQQSMLNIVMQLRKVCNHPYLIPGTEPDSGSVEFL 1062 (1404)
Q Consensus 985 --V~~~LPpk~e~iV~V~LS~~Qk~~Y~~il~~n~~~L~~~~kg~~~~sllnilm~LRK~cnHP~L~~~~e~~~~~~e~l 1062 (1404)
+...||++.+..+.++|++.|+.+|+.++......+...........++..++.||++|+||+++......
T Consensus 248 ~~~~~~lp~~~~~~v~~~l~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~~~~~p~l~~~~~~~------- 320 (500)
T 1z63_A 248 KAIINDLPDKIETNVYCNLTPEQAAMYKAEVENLFNNIDSVTGIKRKGMILSTLLKLKQIVDHPALLKGGEQS------- 320 (500)
T ss_dssp HHHHTTSCSEEEEEEEECCCHHHHHHHHHHHHHHTTTTTTCCTHHHHHHHHHHHHHHHHHTTCTHHHHCSCCC-------
T ss_pred cchhhcCCCCeEEEEEcCCCHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhCCHHHhcCccch-------
Confidence 67789999999999999999999999988765433322222223456788999999999999987643221
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHcCCeEEEEecchhHHHHHHHHHhhhcCCceEEEEeCCCCHHHHHHHHHHHhcCCCce
Q 042857 1063 HEMRIKASAKLTLLHSMLKVLYKEGHRVLIFSQMTKLLDILEDYLNIEFGPKTYERVDGSVSVGDRQAAITRFNQDKSRF 1142 (1404)
Q Consensus 1063 ~~~~i~~SgKl~~L~kLL~kl~~~G~KVLIFSq~~~~LDiLed~L~~~f~g~~y~rLdGs~s~~eRq~~Id~Fn~~~s~~ 1142 (1404)
...++|+..|.++|..+...|+|+|||++++.+++.|..+|...+ ++.+.+++|+++..+|++++++|++++...
T Consensus 321 ----~~~s~K~~~l~~~l~~~~~~~~k~lvF~~~~~~~~~l~~~l~~~~-~~~~~~~~g~~~~~~R~~~~~~F~~~~~~~ 395 (500)
T 1z63_A 321 ----VRRSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKEL-NTEVPFLYGELSKKERDDIISKFQNNPSVK 395 (500)
T ss_dssp ----STTCHHHHHHHHHHHHHHTTTCCEEEECSCHHHHHHHHHHHHHHH-TCCCCEEETTSCHHHHHHHHHHHHHCTTCC
T ss_pred ----hhcchhHHHHHHHHHHHHccCCcEEEEEehHHHHHHHHHHHHHhh-CCCeEEEECCCCHHHHHHHHHHhcCCCCCC
Confidence 346899999999999999999999999999999999999998643 678889999999999999999999886666
Q ss_pred EEEeecccccccccccCCCEEEEEcCCCCHhHHHHHHHhhhccCCCCcEEEEEEeeCCCHHHHHHHHHHHHHhhhHHHhc
Q 042857 1143 VFLLSTRSCGLGINLATADTVIIYDSDFNPHADIQAMNRAHRIGQSKRLLVYRLVVRASVEERILQLAKKKLMLDQLFVN 1222 (1404)
Q Consensus 1143 VfLLSTrAgG~GINL~~AdtVIi~DsdWNP~~d~QAigRahRiGQ~k~V~VYrLvt~~TvEE~Ilq~a~~Kl~L~~~vv~ 1222 (1404)
+||+||+++|+||||+.|++||+||++|||..+.||+||+||+||+++|.||+|++.+|+||+|++++..|..+...+++
T Consensus 396 vil~st~~~~~Glnl~~~~~vi~~d~~~~~~~~~Q~~gR~~R~Gq~~~v~v~~lv~~~tiee~i~~~~~~K~~l~~~~~~ 475 (500)
T 1z63_A 396 FIVLSVKAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVGTLEEKIDQLLAFKRSLFKDIIS 475 (500)
T ss_dssp CCEEECCCC-CCCCCTTCSEEEESSCCSCC---CHHHHTTTTTTTTSCEEEEEEEETTSHHHHTHHHHTTCSSSSSSGGG
T ss_pred EEEEecccccCCCchhhCCEEEEeCCCCCcchHHHHHHHHHHcCCCCeeEEEEEEeCCCHHHHHHHHHHHHHHHHHHHhh
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999888887
Q ss_pred CC
Q 042857 1223 KS 1224 (1404)
Q Consensus 1223 ~~ 1224 (1404)
..
T Consensus 476 ~~ 477 (500)
T 1z63_A 476 SG 477 (500)
T ss_dssp ST
T ss_pred cC
Confidence 53
No 4
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=100.00 E-value=3.8e-48 Score=507.96 Aligned_cols=421 Identities=21% Similarity=0.280 Sum_probs=328.5
Q ss_pred CCCCHHHHHHHHHHHHhhccCCcEEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEeCCCChHHHHHHHHHHCCCCcE
Q 042857 754 GALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLSTMPNWLAEFALWAPNLNV 833 (1404)
Q Consensus 754 ~~L~pyQlegVnwL~~~~~~~~~~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP~Sll~nW~rEf~kw~P~l~V 833 (1404)
.+|+|||++++.|++.. .+.++||||+||+|||+++++++..++..+ ..+++|||||.+++.||..||.+|+ ++.+
T Consensus 152 ~~LrpyQ~eav~~~l~~--~~~~~LLad~tGlGKTi~Ai~~i~~l~~~g-~~~rvLIVvP~sLl~Qw~~E~~~~f-~l~v 227 (968)
T 3dmq_A 152 TSLIPHQLNIAHDVGRR--HAPRVLLADEVGLGKTIEAGMILHQQLLSG-AAERVLIIVPETLQHQWLVEMLRRF-NLRF 227 (968)
T ss_dssp SCCCHHHHHHHHHHHHS--SSCEEEECCCTTSCHHHHHHHHHHHHHHTS-SCCCEEEECCTTTHHHHHHHHHHHS-CCCC
T ss_pred CCCcHHHHHHHHHHHHh--cCCCEEEECCCCCcHHHHHHHHHHHHHHhC-CCCeEEEEeCHHHHHHHHHHHHHHh-CCCE
Confidence 47999999999999873 367899999999999999999998887544 3458999999999999999999999 7888
Q ss_pred EEEecchhHHHHHHHhhhccCCCCccccccCCCCceEEEeeHHHHHhhh---ccccCCCceEEEEccccccCCCccH---
Q 042857 834 VEYHGCAKARAIIRQYEWHASDPDNLNKKTSSYKFNVLLTTYEMILADS---SHLRGVPWEVLVVDEGHRLKNSGSK--- 907 (1404)
Q Consensus 834 vvy~G~~~~R~~ir~~E~~~~~~~~~~~~~~~~kfdVvITTYe~l~~d~---~~L~~i~w~lVIVDEAHrlKN~~Sk--- 907 (1404)
.+|+|......... .......++|+|+||+.+..+. ..+....|++|||||||+++|..+.
T Consensus 228 ~v~~~~~~~~~~~~-------------~~~~~~~~dIvI~T~~~L~~~~~~~~~l~~~~~dlVIvDEAH~~kn~~~~~s~ 294 (968)
T 3dmq_A 228 ALFDDERYAEAQHD-------------AYNPFDTEQLVICSLDFARRSKQRLEHLCEAEWDLLVVDEAHHLVWSEDAPSR 294 (968)
T ss_dssp EECCHHHHHHHHHT-------------TCSSSTTCSEEEECHHHHHTSTTTTHHHHTSCCCEEEECCSSCCCCBTTBCCH
T ss_pred EEEccchhhhhhhh-------------cccccccCCEEEEcHHHHhhCHHHHHHhhhcCCCEEEehhhHhhcCCCCcchH
Confidence 88887654332111 0112346799999999998764 4466789999999999999987654
Q ss_pred HHHHHhhc--ccccEEEEeccCCCCChHHHHHHhhhhCCCCCCChhHHHHHhccccch----------------------
Q 042857 908 LFSLLNSF--SFQHRVLLTGTPLQNNIGEMYNLLNFLQPASFPSLSSFEEKFNDLTTT---------------------- 963 (1404)
Q Consensus 908 ~~~~L~~l--~~~~rLLLTGTPlqNnl~EL~sLL~fL~P~~f~s~~~F~~~f~d~~~~---------------------- 963 (1404)
.++++..+ ..+++|+|||||++|++.|+|++++|+.|..|.+...|...|......
T Consensus 295 ~~~~l~~L~~~~~~~L~LTATPi~n~~~el~sll~~L~p~~~~~~~~f~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~L~ 374 (968)
T 3dmq_A 295 EYQAIEQLAEHVPGVLLLTATPEQLGMESHFARLRLLDPNRFHDFAQFVEEQKNYCPVADAVAMLLAGNKLSNDELNMLG 374 (968)
T ss_dssp HHHHHHHHHTTCSSEEESCSSCSSSCSSCTHHHHHHHCTTTCSSTHHHHHHHHHHHHHHHHHHTTTTSCCCCGGGTTSST
T ss_pred HHHHHHHHhhcCCcEEEEEcCCccCCHHHHHHHHHhcCccccCCHHHHHHHHHhHHHHHHHHHHHhccCCCCHHHHHHHH
Confidence 47888887 678899999999999999999999999999999999998775432110
Q ss_pred ------------------------HHHHHHHHhh-----hhhhhhhhHhhhhhcCCCceEEEEEecCCHHHHHHHHHHHH
Q 042857 964 ------------------------QKVEELKKLV-----APHMLRRLKKDAMQNIPPKTERMVPVELSSIQAEYYRAMLT 1014 (1404)
Q Consensus 964 ------------------------~~i~~L~~lL-----~p~mLRR~K~dV~~~LPpk~e~iV~V~LS~~Qk~~Y~~il~ 1014 (1404)
.....+..++ ...++|+++..+ ..+|++....+.+.+++.+...|.....
T Consensus 375 ~~l~~~~~~~l~~~~~~~~~~~~~~~~~~i~~lld~~g~~~~l~r~~r~~i-~~~p~r~~~~~~l~~~~~~~~~~~~~~~ 453 (968)
T 3dmq_A 375 EMIGEQDIEPLLQAANSDSEDAQSARQELVSMLMDRHGTSRVLFRNTRNGV-KGFPKRELHTIKLPLPTQYQTAIKVSGI 453 (968)
T ss_dssp TTTCTTCSSTTGGGTCCCSSCSTTTHHHHHHHHGGGCTTTTTEECCCTTTC-CCCCCCCCCEEEECCCHHHHHHHHHHHH
T ss_pred HHhcchhhHHHHhcccchhhhhHHHHHHHHHHHHHhhCcchhhhhhhhhhh-cccChhheEeeecCCCHHHHHHHHHHhh
Confidence 0111122222 233445545444 5789999999999999998888764211
Q ss_pred HHHHHHHhhccchhhHHHHHHHHHHHHHhCCCCCCCCC-CCCCCcHHHHHHHHHhhhhHHHHHHHHHHHHHHcCCeEEEE
Q 042857 1015 KNYQILRNIGKGVAQQSMLNIVMQLRKVCNHPYLIPGT-EPDSGSVEFLHEMRIKASAKLTLLHSMLKVLYKEGHRVLIF 1093 (1404)
Q Consensus 1015 ~n~~~L~~~~kg~~~~sllnilm~LRK~cnHP~L~~~~-e~~~~~~e~l~~~~i~~SgKl~~L~kLL~kl~~~G~KVLIF 1093 (1404)
. .......... . .+.+|...... ..... ..+..+.|+..|.++|.. ..+.++|||
T Consensus 454 -----~--~~~~~~~~~~-------~-~~l~pe~~~~~l~~~~~-------~~~~~~~K~~~L~~ll~~--~~~~k~iVF 509 (968)
T 3dmq_A 454 -----M--GARKSAEDRA-------R-DMLYPERIYQEFEGDNA-------TWWNFDPRVEWLMGYLTS--HRSQKVLVI 509 (968)
T ss_dssp -----T--TCCSSGGGGT-------H-HHHCSGGGTTTTTSSSC-------CTTTTSHHHHHHHHHHHH--TSSSCCCEE
T ss_pred -----h--hhhhhhHHHH-------h-hhcChHHHHHHhhhhhh-------cccCccHHHHHHHHHHHh--CCCCCEEEE
Confidence 1 0111111000 1 11223222111 11000 013457899999999987 578999999
Q ss_pred ecchhHHHHHHHHHhhhcCCceEEEEeCCCCHHHHHHHHHHHhcCCCceEEEeecccccccccccCCCEEEEEcCCCCHh
Q 042857 1094 SQMTKLLDILEDYLNIEFGPKTYERVDGSVSVGDRQAAITRFNQDKSRFVFLLSTRSCGLGINLATADTVIIYDSDFNPH 1173 (1404)
Q Consensus 1094 Sq~~~~LDiLed~L~~~f~g~~y~rLdGs~s~~eRq~~Id~Fn~~~s~~VfLLSTrAgG~GINL~~AdtVIi~DsdWNP~ 1173 (1404)
|+++.+++.|..+|...+ |+.+..+||+++..+|+.++++|+++.+.+.+|++|.++++|||++.|++||+||++|||.
T Consensus 510 ~~~~~~~~~l~~~L~~~~-g~~~~~lhG~~~~~~R~~~l~~F~~g~~~~~vLvaT~v~~~GlDl~~~~~VI~~d~p~~~~ 588 (968)
T 3dmq_A 510 CAKAATALQLEQVLRERE-GIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMVMFDLPFNPD 588 (968)
T ss_dssp CSSTHHHHHHHHHHHTTT-CCCEEEECTTSCTTHHHHHHHHHHSTTSSCEEEECSCCTTCSSCCTTCCEEECSSCCSSHH
T ss_pred eCcHHHHHHHHHHHHHHc-CCcEEEEeCCCCHHHHHHHHHHHhCCCCcccEEEecchhhcCCCcccCcEEEEecCCCCHH
Confidence 999999999999998543 7899999999999999999999998875667899999999999999999999999999999
Q ss_pred HHHHHHHhhhccCCCCcEEEEEEeeCCCHHHHHHHHHHHHHhhh
Q 042857 1174 ADIQAMNRAHRIGQSKRLLVYRLVVRASVEERILQLAKKKLMLD 1217 (1404)
Q Consensus 1174 ~d~QAigRahRiGQ~k~V~VYrLvt~~TvEE~Ilq~a~~Kl~L~ 1217 (1404)
.+.|++||+||+||++.|.||++++.+|+|++|++.+.+|..+.
T Consensus 589 ~~~Q~~GR~~R~Gq~~~v~v~~~~~~~t~ee~i~~~~~~k~~~~ 632 (968)
T 3dmq_A 589 LLEQRIGRLDRIGQAHDIQIHVPYLEKTAQSVLVRWYHEGLDAF 632 (968)
T ss_dssp HHHHHHHTTSCSSSCSCCEEEEEEETTSHHHHHHHHHHHTTCCS
T ss_pred HHHHHhhccccCCCCceEEEEEecCCChHHHHHHHHHHhCCCce
Confidence 99999999999999999999999999999999999999988654
No 5
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=6.2e-44 Score=426.45 Aligned_cols=425 Identities=15% Similarity=0.142 Sum_probs=294.9
Q ss_pred CCCCHHHHHHHHHHHHhhccCCcEEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEeCC-CChHHHHHHHHHHC--CC
Q 042857 754 GALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPL-STMPNWLAEFALWA--PN 830 (1404)
Q Consensus 754 ~~L~pyQlegVnwL~~~~~~~~~~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP~-Sll~nW~rEf~kw~--P~ 830 (1404)
.+|+|||.+++.|++. + ++||+++||+|||+++++++..++. ...+++|||||. +++.||.++|.+|+ |.
T Consensus 8 ~~l~~~Q~~~i~~~~~----~-~~ll~~~tG~GKT~~~~~~~~~~~~--~~~~~~liv~P~~~L~~q~~~~~~~~~~~~~ 80 (494)
T 1wp9_A 8 IQPRIYQEVIYAKCKE----T-NCLIVLPTGLGKTLIAMMIAEYRLT--KYGGKVLMLAPTKPLVLQHAESFRRLFNLPP 80 (494)
T ss_dssp HCCCHHHHHHHHHGGG----S-CEEEECCTTSCHHHHHHHHHHHHHH--HSCSCEEEECSSHHHHHHHHHHHHHHBCSCG
T ss_pred CCccHHHHHHHHHHhh----C-CEEEEcCCCCCHHHHHHHHHHHHHh--cCCCeEEEEECCHHHHHHHHHHHHHHhCcch
Confidence 3799999999999866 3 9999999999999999999888765 345689999998 67899999999998 56
Q ss_pred CcEEEEecchhHHHHHHHhhhccCCCCccccccCCCCceEEEeeHHHHHhhhc--cccCCCceEEEEccccccCCCccHH
Q 042857 831 LNVVEYHGCAKARAIIRQYEWHASDPDNLNKKTSSYKFNVLLTTYEMILADSS--HLRGVPWEVLVVDEGHRLKNSGSKL 908 (1404)
Q Consensus 831 l~Vvvy~G~~~~R~~ir~~E~~~~~~~~~~~~~~~~kfdVvITTYe~l~~d~~--~L~~i~w~lVIVDEAHrlKN~~Sk~ 908 (1404)
..+..++|..........+ ..++|+|+||+.+..... .+....|++|||||||++++..+..
T Consensus 81 ~~v~~~~g~~~~~~~~~~~----------------~~~~ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~~~~~~~~~ 144 (494)
T 1wp9_A 81 EKIVALTGEKSPEERSKAW----------------ARAKVIVATPQTIENDLLAGRISLEDVSLIVFDEAHRAVGNYAYV 144 (494)
T ss_dssp GGEEEECSCSCHHHHHHHH----------------HHCSEEEECHHHHHHHHHTTSCCTTSCSEEEEETGGGCSTTCHHH
T ss_pred hheEEeeCCcchhhhhhhc----------------cCCCEEEecHHHHHHHHhcCCcchhhceEEEEECCcccCCCCcHH
Confidence 6999999987654322211 146899999999987543 4556789999999999998753322
Q ss_pred --HHHHh-hcccccEEEEeccCCCCChHHHHHHhhhhCCCCC---CChhHHHHHhc--------cccchHHHHHHHHhhh
Q 042857 909 --FSLLN-SFSFQHRVLLTGTPLQNNIGEMYNLLNFLQPASF---PSLSSFEEKFN--------DLTTTQKVEELKKLVA 974 (1404)
Q Consensus 909 --~~~L~-~l~~~~rLLLTGTPlqNnl~EL~sLL~fL~P~~f---~s~~~F~~~f~--------d~~~~~~i~~L~~lL~ 974 (1404)
...+. .....++|+|||||. ++..+++.++.++.+..+ .....+...|. ..........+...+.
T Consensus 145 ~~~~~~~~~~~~~~~l~lTaTp~-~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (494)
T 1wp9_A 145 FIAREYKRQAKNPLVIGLTASPG-STPEKIMEVINNLGIEHIEYRSENSPDVRPYVKGIRFEWVRVDLPEIYKEVRKLLR 223 (494)
T ss_dssp HHHHHHHHHCSSCCEEEEESCSC-SSHHHHHHHHHHTTCCEEEECCTTSTTTGGGCCCCCEEEEEECCCHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCeEEEEecCCC-CCcHHHHHHHHhcChheeeccCCCcHHHHHhcCCCceeEEecCCcHHHHHHHHHHH
Confidence 22222 234678999999999 777888888877764422 12111111111 1122345677888888
Q ss_pred hhhhhhhHhhhhhcCCCceEEEEEecCCHHHHHHHHHHHHHH---------------------HHHHHhhccchhhHHHH
Q 042857 975 PHMLRRLKKDAMQNIPPKTERMVPVELSSIQAEYYRAMLTKN---------------------YQILRNIGKGVAQQSML 1033 (1404)
Q Consensus 975 p~mLRR~K~dV~~~LPpk~e~iV~V~LS~~Qk~~Y~~il~~n---------------------~~~L~~~~kg~~~~sll 1033 (1404)
+++.+|++......+..... ..++..........+... ...+... .......+.
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 298 (494)
T 1wp9_A 224 EMLRDALKPLAETGLLESSS----PDIPKKEVLRAGQIINEEMAKGNHDLRGLLLYHAMALKLHHAIELL-ETQGLSALR 298 (494)
T ss_dssp HHHHHHHHHHHHHTSSSCCC----TTSCHHHHHHHHHHHHHHHTTTCCSTTTHHHHHHHHHHHHHHHHHH-HHTCHHHHH
T ss_pred HHHHHHHHHHHHhccccccC----CCcchhHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHH-HhhcHHHHH
Confidence 99988888665544332211 112222111111000000 0000000 001122344
Q ss_pred HHHHHHHHHhCCCCCCCCCCCCCCcHHHHHHHH---------HhhhhHHHHHHHHHHHHH--HcCCeEEEEecchhHHHH
Q 042857 1034 NIVMQLRKVCNHPYLIPGTEPDSGSVEFLHEMR---------IKASAKLTLLHSMLKVLY--KEGHRVLIFSQMTKLLDI 1102 (1404)
Q Consensus 1034 nilm~LRK~cnHP~L~~~~e~~~~~~e~l~~~~---------i~~SgKl~~L~kLL~kl~--~~G~KVLIFSq~~~~LDi 1102 (1404)
..+..+...+.|+......... .. ..+.... ...++|+..|.++|..+. ..++++|||++++.+++.
T Consensus 299 ~~~~~l~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~ 376 (494)
T 1wp9_A 299 AYIKKLYEEAKAGSTKASKEIF-SD-KRMKKAISLLVQAKEIGLDHPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKK 376 (494)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHH-TS-HHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHH
T ss_pred HHHHHHHHhhccccchhhhhhh-hh-HHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhccCCCCeEEEEEccHHHHHH
Confidence 5555555555552110000000 00 0000000 146889999999999987 468999999999999999
Q ss_pred HHHHHhhhcCCceEEEEeC--------CCCHHHHHHHHHHHhcCCCceEEEeecccccccccccCCCEEEEEcCCCCHhH
Q 042857 1103 LEDYLNIEFGPKTYERVDG--------SVSVGDRQAAITRFNQDKSRFVFLLSTRSCGLGINLATADTVIIYDSDFNPHA 1174 (1404)
Q Consensus 1103 Led~L~~~f~g~~y~rLdG--------s~s~~eRq~~Id~Fn~~~s~~VfLLSTrAgG~GINL~~AdtVIi~DsdWNP~~ 1174 (1404)
|.++|... ++.+.+++| +++..+|++++++|+++... +|++|.++|+||||+.|++||+||++|||..
T Consensus 377 l~~~L~~~--~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~~~~~--vLv~T~~~~~Gldl~~~~~Vi~~d~~~~~~~ 452 (494)
T 1wp9_A 377 IVNELVKD--GIKAKRFVGQASKENDRGLSQREQKLILDEFARGEFN--VLVATSVGEEGLDVPEVDLVVFYEPVPSAIR 452 (494)
T ss_dssp HHHHHHHT--TCCEEEECCSSCC-------CCHHHHHHHHHHHTSCS--EEEECGGGGGGGGSTTCCEEEESSCCHHHHH
T ss_pred HHHHHHHc--CCCcEEEeccccccccccCCHHHHHHHHHHHhcCCce--EEEECCccccCCCchhCCEEEEeCCCCCHHH
Confidence 99999986 789999999 89999999999999987644 7999999999999999999999999999999
Q ss_pred HHHHHHhhhccCCCCcEEEEEEeeCCCHHHHHHHHHHHHHhh
Q 042857 1175 DIQAMNRAHRIGQSKRLLVYRLVVRASVEERILQLAKKKLML 1216 (1404)
Q Consensus 1175 d~QAigRahRiGQ~k~V~VYrLvt~~TvEE~Ilq~a~~Kl~L 1216 (1404)
+.|++||+||.|| +.+|+|++.+|+||+++.++.+|..+
T Consensus 453 ~~Qr~GR~~R~g~---g~~~~l~~~~t~ee~~~~~~~~k~~~ 491 (494)
T 1wp9_A 453 SIQRRGRTGRHMP---GRVIILMAKGTRDEAYYWSSRQKEKI 491 (494)
T ss_dssp HHHHHTTSCSCCC---SEEEEEEETTSHHHHHHHHCC-----
T ss_pred HHHHHhhccCCCC---ceEEEEEecCCHHHHHHHHHHHHHHH
Confidence 9999999999998 88999999999999999999888654
No 6
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=100.00 E-value=8.8e-42 Score=387.58 Aligned_cols=237 Identities=26% Similarity=0.414 Sum_probs=183.6
Q ss_pred hhhhhhHhhhhhcCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHhCCCCCCCCCCCC
Q 042857 976 HMLRRLKKDAMQNIPPKTERMVPVELSSIQAEYYRAMLTKNYQILRNIGKGVAQQSMLNIVMQLRKVCNHPYLIPGTEPD 1055 (1404)
Q Consensus 976 ~mLRR~K~dV~~~LPpk~e~iV~V~LS~~Qk~~Y~~il~~n~~~L~~~~kg~~~~sllnilm~LRK~cnHP~L~~~~e~~ 1055 (1404)
--+||+|++|..+|||+.+++++|+||+.|+++|+.++.+....+...........+++.+++||++|+||+++.....
T Consensus 12 ~~~rr~k~~v~~~LP~k~e~~v~v~ls~~Q~~~Y~~~~~~~~~~~~~~~~~~~~~~~l~~l~~Lrq~~~hP~l~~~~~~- 90 (271)
T 1z5z_A 12 SGLVPRGSHMASDLPDKIETNVYCNLTPEQAAMYKAEVENLFNNIDSVTGIKRKGMILSTLLKLKQIVDHPALLKGGEQ- 90 (271)
T ss_dssp ----------------CEEEEEEECCCHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHTTCTHHHHCSCC-
T ss_pred ccccccHHHHHhhCCCCEEEEEEeCCCHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHcCCHHHhcCCcc-
Confidence 3589999999999999999999999999999999999987665554322112245688999999999999999863321
Q ss_pred CCcHHHHHHHHHhhhhHHHHHHHHHHHHHHcCCeEEEEecchhHHHHHHHHHhhhcCCceEEEEeCCCCHHHHHHHHHHH
Q 042857 1056 SGSVEFLHEMRIKASAKLTLLHSMLKVLYKEGHRVLIFSQMTKLLDILEDYLNIEFGPKTYERVDGSVSVGDRQAAITRF 1135 (1404)
Q Consensus 1056 ~~~~e~l~~~~i~~SgKl~~L~kLL~kl~~~G~KVLIFSq~~~~LDiLed~L~~~f~g~~y~rLdGs~s~~eRq~~Id~F 1135 (1404)
.+..|+|+..|.++|..+.+.|+|+||||+++.++++|..+|...+ |+.+.+++|+++..+|++++++|
T Consensus 91 ----------~~~~s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~L~~~~-g~~~~~l~G~~~~~~R~~~i~~F 159 (271)
T 1z5z_A 91 ----------SVRRSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKEL-NTEVPFLYGELSKKERDDIISKF 159 (271)
T ss_dssp ----------CSTTCHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHH-CSCCCEECTTSCHHHHHHHHHHH
T ss_pred ----------ccccCHHHHHHHHHHHHHHhCCCeEEEEeccHHHHHHHHHHHHHhc-CCcEEEEECCCCHHHHHHHHHHh
Confidence 1356999999999999999999999999999999999999998643 67899999999999999999999
Q ss_pred hcCCCceEEEeecccccccccccCCCEEEEEcCCCCHhHHHHHHHhhhccCCCCcEEEEEEeeCCCHHHHHHHHHHHHHh
Q 042857 1136 NQDKSRFVFLLSTRSCGLGINLATADTVIIYDSDFNPHADIQAMNRAHRIGQSKRLLVYRLVVRASVEERILQLAKKKLM 1215 (1404)
Q Consensus 1136 n~~~s~~VfLLSTrAgG~GINL~~AdtVIi~DsdWNP~~d~QAigRahRiGQ~k~V~VYrLvt~~TvEE~Ilq~a~~Kl~ 1215 (1404)
++++...|||+||++||+||||+.|++||+||+||||..+.||+||+||+||+++|.||+|++.+|+||+|++++..|..
T Consensus 160 ~~~~~~~v~L~st~~~g~Glnl~~a~~VI~~d~~wnp~~~~Q~~gR~~R~Gq~~~v~v~~li~~~TiEe~i~~~~~~K~~ 239 (271)
T 1z5z_A 160 QNNPSVKFIVLSVKAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVGTLEEKIDQLLAFKRS 239 (271)
T ss_dssp HHCTTCCEEEEECCTTCCCCCCTTCSEEEECSCCSCTTTC--------------CCEEEEEEETTSHHHHHHHHHHHCHH
T ss_pred cCCCCCCEEEEehhhhcCCcCcccCCEEEEECCCCChhHHHHHHHhccccCCCCceEEEEEeeCCCHHHHHHHHHHHHHH
Confidence 99866668999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHhcCC
Q 042857 1216 LDQLFVNKS 1224 (1404)
Q Consensus 1216 L~~~vv~~~ 1224 (1404)
+...+++..
T Consensus 240 l~~~~~~~~ 248 (271)
T 1z5z_A 240 LFKDIISSG 248 (271)
T ss_dssp HHTTGGGGT
T ss_pred HHHHHHccC
Confidence 999998753
No 7
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=100.00 E-value=2e-39 Score=393.58 Aligned_cols=370 Identities=20% Similarity=0.245 Sum_probs=269.5
Q ss_pred CCCCCHHHHHHHHHHHHhhccCCcEEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEeCC-CChHHHHHHHHHHCCCC
Q 042857 753 GGALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPL-STMPNWLAEFALWAPNL 831 (1404)
Q Consensus 753 g~~L~pyQlegVnwL~~~~~~~~~~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP~-Sll~nW~rEf~kw~P~l 831 (1404)
+..|+|||.++++++.. +.++||+++||+|||++++.++..+ .+++|||||. +++.||.++|..| ++
T Consensus 91 ~~~l~~~Q~~ai~~i~~----~~~~ll~~~TGsGKT~~~l~~i~~~------~~~~Lvl~P~~~L~~Q~~~~~~~~--~~ 158 (472)
T 2fwr_A 91 EISLRDYQEKALERWLV----DKRGCIVLPTGSGKTHVAMAAINEL------STPTLIVVPTLALAEQWKERLGIF--GE 158 (472)
T ss_dssp CCCBCHHHHHHHHHHTT----TTEEEEECCTTSCHHHHHHHHHHHH------CSCEEEEESSHHHHHHHHHHGGGG--CG
T ss_pred CCCcCHHHHHHHHHHHh----cCCEEEEeCCCCCHHHHHHHHHHHc------CCCEEEEECCHHHHHHHHHHHHhC--CC
Confidence 46899999999997754 5679999999999999999888765 4589999999 7889999999995 56
Q ss_pred c-EEEEecchhHHHHHHHhhhccCCCCccccccCCCCceEEEeeHHHHHhhhccccCCCceEEEEccccccCCCccHHHH
Q 042857 832 N-VVEYHGCAKARAIIRQYEWHASDPDNLNKKTSSYKFNVLLTTYEMILADSSHLRGVPWEVLVVDEGHRLKNSGSKLFS 910 (1404)
Q Consensus 832 ~-Vvvy~G~~~~R~~ir~~E~~~~~~~~~~~~~~~~kfdVvITTYe~l~~d~~~L~~i~w~lVIVDEAHrlKN~~Sk~~~ 910 (1404)
. +.+++|... ...+|+|+||+.+......+. -.|++|||||+|++.+... ..
T Consensus 159 ~~v~~~~g~~~------------------------~~~~Ivv~T~~~l~~~~~~~~-~~~~liIvDEaH~~~~~~~--~~ 211 (472)
T 2fwr_A 159 EYVGEFSGRIK------------------------ELKPLTVSTYDSAYVNAEKLG-NRFMLLIFDEVHHLPAESY--VQ 211 (472)
T ss_dssp GGEEEBSSSCB------------------------CCCSEEEEEHHHHHHTHHHHT-TTCSEEEEETGGGTTSTTT--HH
T ss_pred cceEEECCCcC------------------------CcCCEEEEEcHHHHHHHHHhc-CCCCEEEEECCcCCCChHH--HH
Confidence 7 888887432 135799999999987765543 3599999999999987654 34
Q ss_pred HHhhcccccEEEEeccCCCCChHHHHHHhhhhCCCCCCChhHHHHHhccccchHHHHHHHHhhhhhhhhhhHhhhhhc-C
Q 042857 911 LLNSFSFQHRVLLTGTPLQNNIGEMYNLLNFLQPASFPSLSSFEEKFNDLTTTQKVEELKKLVAPHMLRRLKKDAMQN-I 989 (1404)
Q Consensus 911 ~L~~l~~~~rLLLTGTPlqNnl~EL~sLL~fL~P~~f~s~~~F~~~f~d~~~~~~i~~L~~lL~p~mLRR~K~dV~~~-L 989 (1404)
.+..+...++|+|||||.+++-.+ ..|..++.|.+.++...++... +
T Consensus 212 ~~~~~~~~~~l~lSATp~~~~~~~--------------------------------~~l~~~~~~~~~~~~~~~l~~~~l 259 (472)
T 2fwr_A 212 IAQMSIAPFRLGLTATFEREDGRH--------------------------------EILKEVVGGKVFELFPDSLAGKHL 259 (472)
T ss_dssp HHHTCCCSEEEEEESCCCCTTSGG--------------------------------GSHHHHTCCEEEECCHHHHTSCCC
T ss_pred HHHhcCCCeEEEEecCccCCCCHH--------------------------------HHHHHHhCCeEeecCHHHHhcCcC
Confidence 666778889999999998654221 1234455566666555555433 7
Q ss_pred CCceEEEEEecCCHHHHHHHHHHHHHHHHHHHhhccchh-hHHHHHHHHHHHHHhCCCCCCC-CCCCC--CCc--HHHHH
Q 042857 990 PPKTERMVPVELSSIQAEYYRAMLTKNYQILRNIGKGVA-QQSMLNIVMQLRKVCNHPYLIP-GTEPD--SGS--VEFLH 1063 (1404)
Q Consensus 990 Ppk~e~iV~V~LS~~Qk~~Y~~il~~n~~~L~~~~kg~~-~~sllnilm~LRK~cnHP~L~~-~~e~~--~~~--~e~l~ 1063 (1404)
++.....+.+++++.++..|..+.......+........ ...+ ..++.. ...+. ... .....
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~ 327 (472)
T 2fwr_A 260 AKYTIKRIFVPLAEDERVEYEKREKVYKQFLRARGITLRRAEDF------------NKIVMASGYDERAYEALRAWEEAR 327 (472)
T ss_dssp CSEEECCEEECCCHHHHHHTTTTTHHHHSCSSSCCCTTTCCSSS------------TTTTTTTCCSSSSSTTTHHHHHHH
T ss_pred CCeEEEEEEcCCCHHHHHHHHHHHHHHHHHHHhcCccccchhhH------------HHHHHHhccCHHHHHHHHHHHHHH
Confidence 777888899999999999988766543322211000000 0000 001100 00000 000 11122
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHcCCeEEEEecchhHHHHHHHHHhhhcCCceEEEEeCCCCHHHHHHHHHHHhcCCCceE
Q 042857 1064 EMRIKASAKLTLLHSMLKVLYKEGHRVLIFSQMTKLLDILEDYLNIEFGPKTYERVDGSVSVGDRQAAITRFNQDKSRFV 1143 (1404)
Q Consensus 1064 ~~~i~~SgKl~~L~kLL~kl~~~G~KVLIFSq~~~~LDiLed~L~~~f~g~~y~rLdGs~s~~eRq~~Id~Fn~~~s~~V 1143 (1404)
......+.|+..|.++|.. ..++++|||+++..+++.|..+|. +..++|.++..+|++++++|+++...
T Consensus 328 ~~~~~~~~k~~~l~~~l~~--~~~~k~lvF~~~~~~~~~l~~~l~-------~~~~~g~~~~~~R~~~~~~F~~g~~~-- 396 (472)
T 2fwr_A 328 RIAFNSKNKIRKLREILER--HRKDKIIIFTRHNELVYRISKVFL-------IPAITHRTSREEREEILEGFRTGRFR-- 396 (472)
T ss_dssp HHHHSCSHHHHHHHHHHHH--TSSSCBCCBCSCHHHHHHHHHHTT-------CCBCCSSSCSHHHHTHHHHHHHSSCS--
T ss_pred HHhhcChHHHHHHHHHHHh--CCCCcEEEEECCHHHHHHHHHHhC-------cceeeCCCCHHHHHHHHHHHhCCCCC--
Confidence 2335678999999999987 568999999999999999999885 33589999999999999999986555
Q ss_pred EEeecccccccccccCCCEEEEEcCCCCHhHHHHHHHhhhccCCC-CcEEEEEEeeCCCHHHHHHHHHHHHHhh
Q 042857 1144 FLLSTRSCGLGINLATADTVIIYDSDFNPHADIQAMNRAHRIGQS-KRLLVYRLVVRASVEERILQLAKKKLML 1216 (1404)
Q Consensus 1144 fLLSTrAgG~GINL~~AdtVIi~DsdWNP~~d~QAigRahRiGQ~-k~V~VYrLvt~~TvEE~Ilq~a~~Kl~L 1216 (1404)
+|++|.++++|||++.+++||+||++|||..+.|++||++|.||. +.|.||+|++.+|+||+|.++.+.|..+
T Consensus 397 vLv~T~~~~~Gldlp~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~k~~~~i~~lv~~~t~ee~~~~~r~~~~~~ 470 (472)
T 2fwr_A 397 AIVSSQVLDEGIDVPDANVGVIMSGSGSAREYIQRLGRILRPSKGKKEAVLYELISRGTGEVNTARRRKNAAKG 470 (472)
T ss_dssp BCBCSSCCCSSSCSCCBSEEEEECCSSCCHHHHHHHHHSBCCCTTTCCEEEEEEEECSCC--------------
T ss_pred EEEEcCchhcCcccccCcEEEEECCCCCHHHHHHHHhhccCCCCCCceEEEEEEEeCCCchHHHHHHHHHhhcc
Confidence 789999999999999999999999999999999999999999998 8999999999999999999888776644
No 8
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=100.00 E-value=1.1e-36 Score=348.81 Aligned_cols=215 Identities=21% Similarity=0.212 Sum_probs=168.5
Q ss_pred CCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHhhccchh------hHHHHHHHHHHHHHhCCCCCCC-CCCCCCCcHHH
Q 042857 989 IPPKTERMVPVELSSIQAEYYRAMLTKNYQILRNIGKGVA------QQSMLNIVMQLRKVCNHPYLIP-GTEPDSGSVEF 1061 (1404)
Q Consensus 989 LPpk~e~iV~V~LS~~Qk~~Y~~il~~n~~~L~~~~kg~~------~~sllnilm~LRK~cnHP~L~~-~~e~~~~~~e~ 1061 (1404)
.|++.|++++|+||+.|+++|+.++..++..+.....+.. ..++.+++|+||++||||||+. ...+.......
T Consensus 20 ~~~~~E~~Lpv~Ms~~QK~lY~~il~~~~~~I~~~~~~~~~~~~~~~~sl~nli~qLRkicnHP~L~~d~~~p~~~~~~~ 99 (328)
T 3hgt_A 20 GNTSGDYWLPTTMSLYQKELTDQIVSLHYSDILRYFETSHYKEDVILESMKTMCLNGSLVATHPYLLIDHYMPKSLITRD 99 (328)
T ss_dssp --CCSEEEEEECCCHHHHHHHHHHHHHTHHHHHHHHHTTTTCCHHHHHHHHHHHHHHHHHHHCGGGTCCTTCCSCSCSTT
T ss_pred CCCCceEEEecCCCHHHHHHHHHHHHhhHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHcCChhhhccccCCccccccc
Confidence 4999999999999999999999999887776654322211 3478899999999999999994 33333221112
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHcCCeEEEEecchhHHHHHHHHHhhhcCCceEEEEeCCCCHHHHHHHHHHHhcCCCc
Q 042857 1062 LHEMRIKASAKLTLLHSMLKVLYKEGHRVLIFSQMTKLLDILEDYLNIEFGPKTYERVDGSVSVGDRQAAITRFNQDKSR 1141 (1404)
Q Consensus 1062 l~~~~i~~SgKl~~L~kLL~kl~~~G~KVLIFSq~~~~LDiLed~L~~~f~g~~y~rLdGs~s~~eRq~~Id~Fn~~~s~ 1141 (1404)
..+.++..|||+.+|.+||..+.+.||||||||||+++||+|++||..+ ++.|.|+||++... +++. ...+.
T Consensus 100 ~~~~l~~~SGKf~~L~~LL~~l~~~~~kVLIfsq~t~~LDilE~~l~~~--~~~y~RlDG~~~~~-~~k~-----~~~~~ 171 (328)
T 3hgt_A 100 VPAHLAENSGKFSVLRDLINLVQEYETETAIVCRPGRTMDLLEALLLGN--KVHIKRYDGHSIKS-AAAA-----NDFSC 171 (328)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHTTSCEEEEEEECSTHHHHHHHHHHTTS--SCEEEESSSCCC-------------CCSE
T ss_pred hhhHHHHcCccHHHHHHHHHHHHhCCCEEEEEECChhHHHHHHHHHhcC--CCceEeCCCCchhh-hhhc-----ccCCc
Confidence 2455678999999999999999999999999999999999999999965 99999999996543 3221 12346
Q ss_pred eEEEeeccccccccc-----ccCCCEEEEEcCCCCHhHH-HHHHHhhhcc--CCCCcEEEEEEeeCCCHHHHHHHHHHH
Q 042857 1142 FVFLLSTRSCGLGIN-----LATADTVIIYDSDFNPHAD-IQAMNRAHRI--GQSKRLLVYRLVVRASVEERILQLAKK 1212 (1404)
Q Consensus 1142 ~VfLLSTrAgG~GIN-----L~~AdtVIi~DsdWNP~~d-~QAigRahRi--GQ~k~V~VYrLvt~~TvEE~Ilq~a~~ 1212 (1404)
++||+ |++||.||| |++||+||+||++|||+++ +||+.|+||+ ||+++|.||||++.+||||.+++..+.
T Consensus 172 ~i~Ll-tsag~~gin~~~~nl~~aD~VI~~DsdwNp~~d~iQa~~r~~R~~~gq~k~v~V~RLvt~~TiEh~~l~~~~~ 249 (328)
T 3hgt_A 172 TVHLF-SSEGINFTKYPIKSKARFDMLICLDTTVDTSQKDIQYLLQYKRERKGLERYAPIVRLVAINSIDHCRLFFGKK 249 (328)
T ss_dssp EEEEE-ESSCCCTTTSCCCCCSCCSEEEECSTTCCTTSHHHHHHHCCC---------CCEEEEEETTSHHHHHHHHHHH
T ss_pred eEEEE-ECCCCCCcCcccccCCCCCEEEEECCCCCCCChHHHHHHHHhhhccCCCCcceEEEEeCCCCHHHHHHHccCC
Confidence 77777 679999986 8999999999999999998 9999999999 689999999999999999999998553
No 9
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=100.00 E-value=7e-36 Score=367.15 Aligned_cols=424 Identities=14% Similarity=0.191 Sum_probs=212.9
Q ss_pred CCCCHHHHHHHHHHHHhhccCCcEEEEcCCCchHHHHHHHHHHHHHhhccC--CCcEEEEeCC-CChHHHHHHHHHHCC-
Q 042857 754 GALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKA--KLPCLVLVPL-STMPNWLAEFALWAP- 829 (1404)
Q Consensus 754 ~~L~pyQlegVnwL~~~~~~~~~~ILADEMGLGKTiqaIa~L~~L~~~~~~--~gP~LIVvP~-Sll~nW~rEf~kw~P- 829 (1404)
.+|+|||.+++.+++. +.++|++++||+|||++++..+..++..... .+++|||||. .++.||.++|.+|++
T Consensus 6 ~~~~~~Q~~~i~~~~~----~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~ 81 (556)
T 4a2p_A 6 KKARSYQIELAQPAIN----GKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFER 81 (556)
T ss_dssp --CCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGG
T ss_pred CCCCHHHHHHHHHHHc----CCCEEEEcCCCChHHHHHHHHHHHHHHhCcccCCCeEEEEeCCHHHHHHHHHHHHHHhcc
Confidence 4799999999999865 7899999999999999999888777654332 5679999998 677999999999987
Q ss_pred -CCcEEEEecchhHHHHHHHhhhccCCCCccccccCCCCceEEEeeHHHHHhhhcc--c-cCCCceEEEEccccccCCCc
Q 042857 830 -NLNVVEYHGCAKARAIIRQYEWHASDPDNLNKKTSSYKFNVLLTTYEMILADSSH--L-RGVPWEVLVVDEGHRLKNSG 905 (1404)
Q Consensus 830 -~l~Vvvy~G~~~~R~~ir~~E~~~~~~~~~~~~~~~~kfdVvITTYe~l~~d~~~--L-~~i~w~lVIVDEAHrlKN~~ 905 (1404)
++++..++|+.......... ....+|+|+||+.+...... + ....|++|||||||++.+..
T Consensus 82 ~~~~~~~~~g~~~~~~~~~~~---------------~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~ 146 (556)
T 4a2p_A 82 QGYSVQGISGENFSNVSVEKV---------------IEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNH 146 (556)
T ss_dssp GTCCEEECCCC-----CHHHH---------------HHHCSEEEECHHHHHHHHHSSSCCCSTTCSEEEEETGGGCSTTS
T ss_pred cCceEEEEeCCCCcchhHHHh---------------hCCCCEEEECHHHHHHHHHhCcccccccCCEEEEECCcccCCcc
Confidence 78999999976443222111 02468999999999875422 3 34568999999999998866
Q ss_pred cHHHHHHhhc---------ccccEEEEeccCCCCChHHH-------HHHhhhhCCCCC----CChhHHHHHhccccch--
Q 042857 906 SKLFSLLNSF---------SFQHRVLLTGTPLQNNIGEM-------YNLLNFLQPASF----PSLSSFEEKFNDLTTT-- 963 (1404)
Q Consensus 906 Sk~~~~L~~l---------~~~~rLLLTGTPlqNnl~EL-------~sLL~fL~P~~f----~s~~~F~~~f~d~~~~-- 963 (1404)
. ....+..+ ...++|+|||||.+++..++ ..+...++...+ .....+...+......
T Consensus 147 ~-~~~~~~~~~~~~~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (556)
T 4a2p_A 147 P-YNVLMTRYLEQKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVR 225 (556)
T ss_dssp H-HHHHHHHHHHHHHCC---CCEEEEEESCCCCTTCSSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHTCCCCEEEE
T ss_pred h-HHHHHHHHHHhhhcccCCCCeEEEEeCCcccCchhhHHHHHHHHHHHHHhcCCeEecchhcchHHHHhcCCCCceEEE
Confidence 4 22222222 23568999999988764333 233333432211 1222222222111000
Q ss_pred ----HHHHHHHHhhhhhh--hhhhHhhhhhcCCCceEEEEEecCCH-----------------------HHHHHHHHHHH
Q 042857 964 ----QKVEELKKLVAPHM--LRRLKKDAMQNIPPKTERMVPVELSS-----------------------IQAEYYRAMLT 1014 (1404)
Q Consensus 964 ----~~i~~L~~lL~p~m--LRR~K~dV~~~LPpk~e~iV~V~LS~-----------------------~Qk~~Y~~il~ 1014 (1404)
.....+...+...+ +.....++.. +...... ....+.. .+...|..+..
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (556)
T 4a2p_A 226 LVKRRIHNPFAAIISNLMSETEALMRTIYS-VDTLSQN-SKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFI 303 (556)
T ss_dssp ECCCCSCCHHHHHHHHHHHHHHHHHHHHCC-----------CCCSSHHHHHHHHHHHHHHHHC---CHHHHHHHHHHHHH
T ss_pred EcCCCcCChHHHHHHHHHHHHHHHHHHHhh-hhhhhcc-cccccchhhHHHHHHHHHHHHHhhcccccchhHHHHHHHHH
Confidence 00011111111111 0111111110 0000000 0000000 00011111100
Q ss_pred HHH------HHHHhh---ccchhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCcHHHHHH-------HH------HhhhhH
Q 042857 1015 KNY------QILRNI---GKGVAQQSMLNIVMQLRKVCNHPYLIPGTEPDSGSVEFLHE-------MR------IKASAK 1072 (1404)
Q Consensus 1015 ~n~------~~L~~~---~kg~~~~sllnilm~LRK~cnHP~L~~~~e~~~~~~e~l~~-------~~------i~~SgK 1072 (1404)
... ..+... +.......+...+..++ .+.+. ......... .. ...++|
T Consensus 304 ~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~~-------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~K 373 (556)
T 4a2p_A 304 CTEHLRKYNDALIISEDARIIDALSYLTEFFTNVK---NGPYT-------ELEQHLTAKFQEKEPELIALSKDETNENPK 373 (556)
T ss_dssp HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH---HSCCC-------HHHHHHHHHHHTTHHHHHHHHHCSSSCCHH
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH---hcCCC-------HHHHHHHHHHhhHHHHhhhhccCCCCCChH
Confidence 000 000000 00000000001111111 01000 000000000 00 013889
Q ss_pred HHHHHHHHHHHH--HcCCeEEEEecchhHHHHHHHHHhhh----------cCCceEEEEeCCCCHHHHHHHHHHHhc-CC
Q 042857 1073 LTLLHSMLKVLY--KEGHRVLIFSQMTKLLDILEDYLNIE----------FGPKTYERVDGSVSVGDRQAAITRFNQ-DK 1139 (1404)
Q Consensus 1073 l~~L~kLL~kl~--~~G~KVLIFSq~~~~LDiLed~L~~~----------f~g~~y~rLdGs~s~~eRq~~Id~Fn~-~~ 1139 (1404)
+..|.++|.... ..++|+|||++++.+++.|.++|... +.|..+..+||+++..+|++++++|++ +.
T Consensus 374 ~~~L~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~ 453 (556)
T 4a2p_A 374 LEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKD 453 (556)
T ss_dssp HHHHHHHHHHHHHHCTTCCEEEEESSHHHHHHHHHHHTTCSGGGSCCEEC------------------------------
T ss_pred HHHHHHHHHHHhcCCCCceEEEEEccHHHHHHHHHHHHhCCCcceeeeeEEEccCCcccccccCHHHHHHHHHHhcccCc
Confidence 999999998876 56899999999999999999999753 124556667888999999999999998 43
Q ss_pred CceEEEeecccccccccccCCCEEEEEcCCCCHhHHHHHHHhhhccCCCCcEEEEEEeeCCCHHHHHHHHHHHHHhh
Q 042857 1140 SRFVFLLSTRSCGLGINLATADTVIIYDSDFNPHADIQAMNRAHRIGQSKRLLVYRLVVRASVEERILQLAKKKLML 1216 (1404)
Q Consensus 1140 s~~VfLLSTrAgG~GINL~~AdtVIi~DsdWNP~~d~QAigRahRiGQ~k~V~VYrLvt~~TvEE~Ilq~a~~Kl~L 1216 (1404)
.. +|++|.++|+|||++.+++||+||++|||..++||+|| +| .+++.+|.|++.++++++ ..+...|..+
T Consensus 454 ~~--vLvaT~~~~~GiDip~v~~VI~~d~p~s~~~~~Qr~GR-gR---~~~g~~~~l~~~~~~~~~-~~~~~~k~~~ 523 (556)
T 4a2p_A 454 NR--LLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GR---AAGSKCILVTSKTEVVEN-EKCNRYKEEM 523 (556)
T ss_dssp CC--EEEEEC-----------CEEEEETCCSCHHHHHHC------------CCEEEEESCHHHHHH-HHHHHHHHHH
T ss_pred eE--EEEEcCchhcCCCchhCCEEEEeCCCCCHHHHHHhcCC-CC---CCCceEEEEEeCcchHHH-HHhhHHHHHH
Confidence 34 78999999999999999999999999999999999999 55 477889999999999998 4445555444
No 10
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=100.00 E-value=2.9e-35 Score=379.89 Aligned_cols=406 Identities=15% Similarity=0.212 Sum_probs=219.4
Q ss_pred CCCCCHHHHHHHHHHHHhhccCCcEEEEcCCCchHHHHHHHHHHHHHhhccC--CCcEEEEeCCC-ChHHHHHHHHHHCC
Q 042857 753 GGALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKA--KLPCLVLVPLS-TMPNWLAEFALWAP 829 (1404)
Q Consensus 753 g~~L~pyQlegVnwL~~~~~~~~~~ILADEMGLGKTiqaIa~L~~L~~~~~~--~gP~LIVvP~S-ll~nW~rEf~kw~P 829 (1404)
...|+|||.+++.+++. +.++|++++||+|||++++.++..++..... .+++|||||.. ++.||.++|.+|++
T Consensus 246 ~~~l~~~Q~~~i~~~l~----~~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~Lvl~Pt~~L~~Q~~~~~~~~~~ 321 (797)
T 4a2q_A 246 TKKARSYQIELAQPAIN----GKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFE 321 (797)
T ss_dssp --CCCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHG
T ss_pred CCCCCHHHHHHHHHHHh----CCCEEEEeCCCChHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHhcc
Confidence 35899999999998865 7899999999999999999888877655431 56899999976 77999999999987
Q ss_pred --CCcEEEEecchhHHHHHHHhhhccCCCCccccccCCCCceEEEeeHHHHHhhhc--cc-cCCCceEEEEccccccCCC
Q 042857 830 --NLNVVEYHGCAKARAIIRQYEWHASDPDNLNKKTSSYKFNVLLTTYEMILADSS--HL-RGVPWEVLVVDEGHRLKNS 904 (1404)
Q Consensus 830 --~l~Vvvy~G~~~~R~~ir~~E~~~~~~~~~~~~~~~~kfdVvITTYe~l~~d~~--~L-~~i~w~lVIVDEAHrlKN~ 904 (1404)
++++..++|+.......... ....+|+|+||+.+..... .+ ....|++|||||||++.+.
T Consensus 322 ~~~~~v~~~~g~~~~~~~~~~~---------------~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEaH~~~~~ 386 (797)
T 4a2q_A 322 RQGYSVQGISGENFSNVSVEKV---------------IEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGN 386 (797)
T ss_dssp GGTCCEEEECCC-----CHHHH---------------HHTCSEEEECHHHHHHHHHSSSCCCGGGCSEEEETTGGGCSTT
T ss_pred cCCceEEEEeCCcchhhhHHHh---------------hCCCCEEEEchHHHHHHHHhccccccccCCEEEEECccccCCC
Confidence 88999999987544322211 1256899999999987542 22 2335799999999999886
Q ss_pred ccHHHHHHhhc---------ccccEEEEeccCCCCChHHHHHHhh-------hhCCCCC----CChhHHHHHhccccchH
Q 042857 905 GSKLFSLLNSF---------SFQHRVLLTGTPLQNNIGEMYNLLN-------FLQPASF----PSLSSFEEKFNDLTTTQ 964 (1404)
Q Consensus 905 ~Sk~~~~L~~l---------~~~~rLLLTGTPlqNnl~EL~sLL~-------fL~P~~f----~s~~~F~~~f~d~~~~~ 964 (1404)
.+ ....+..+ ...++|+|||||.+++..++...++ .+++..+ .....+...+..
T Consensus 387 ~~-~~~i~~~~~~~~~~~~~~~~~~l~lSATp~~~~~~~~~~~~~~i~~l~~~L~~~~i~~~~~~~~~l~~~~~~----- 460 (797)
T 4a2q_A 387 HP-YNVLMTRYLEQKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNK----- 460 (797)
T ss_dssp SH-HHHHHHHHHHHHHTTCCCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHSCC-----
T ss_pred cc-HHHHHHHHHHHhhccCCCCCeEEEEcCCccccccccHHHHHHHHHHHHHhcCCcEEecccccHHHHHHhcCC-----
Confidence 54 33322222 2256899999998876544333322 2222111 111222222111
Q ss_pred HHHHHHHhhhhhhhhhhHhhhhhcCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHh----------------------
Q 042857 965 KVEELKKLVAPHMLRRLKKDAMQNIPPKTERMVPVELSSIQAEYYRAMLTKNYQILRN---------------------- 1022 (1404)
Q Consensus 965 ~i~~L~~lL~p~mLRR~K~dV~~~LPpk~e~iV~V~LS~~Qk~~Y~~il~~n~~~L~~---------------------- 1022 (1404)
|......+...+.+.....+..++......+..
T Consensus 461 -------------------------~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~l~~l~~~~~~~~g~~~~~~ 515 (797)
T 4a2q_A 461 -------------------------PEIDVRLVKRRIHNPFAAIISNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEH 515 (797)
T ss_dssp -------------------------CCCEEEECCCCSCCHHHHHHHHHHHHHHHHHHHC------------CCSSHHHHH
T ss_pred -------------------------CceEEEecCCCCCcHHHHHHHHHHHHHHHHHHHHHhhHHhhhhccccccchhHHH
Confidence 111111111112222222222221111111000
Q ss_pred -----------hc-cch-h----hHHHHHHHHHHHHHhCCCCCCCCCC-------------------CCCCcHHHHHHH-
Q 042857 1023 -----------IG-KGV-A----QQSMLNIVMQLRKVCNHPYLIPGTE-------------------PDSGSVEFLHEM- 1065 (1404)
Q Consensus 1023 -----------~~-kg~-~----~~sllnilm~LRK~cnHP~L~~~~e-------------------~~~~~~e~l~~~- 1065 (1404)
.. ... . ...+......|++.. +........ ........+...
T Consensus 516 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~ 594 (797)
T 4a2q_A 516 WIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYN-DALIISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKF 594 (797)
T ss_dssp HHHHHHHHHHHCCCSSHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHH-HHHhhhccccHHHHHHHHHHHHHHHhccCccHHHHHHHHHH
Confidence 00 000 0 001111111221110 000000000 000000000000
Q ss_pred -------H------HhhhhHHHHHHHHHHHHH--HcCCeEEEEecchhHHHHHHHHHhhh----------cCCceEEEEe
Q 042857 1066 -------R------IKASAKLTLLHSMLKVLY--KEGHRVLIFSQMTKLLDILEDYLNIE----------FGPKTYERVD 1120 (1404)
Q Consensus 1066 -------~------i~~SgKl~~L~kLL~kl~--~~G~KVLIFSq~~~~LDiLed~L~~~----------f~g~~y~rLd 1120 (1404)
. ...++|+..|.++|.... ..++|+|||++++.+++.|.++|... +.|..+..+|
T Consensus 595 ~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~~kvLIF~~~~~~~~~L~~~L~~~~~~~~~~~~~l~G~~~~~~h 674 (797)
T 4a2q_A 595 QEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQT 674 (797)
T ss_dssp HTTHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHCSSCCEEEEESSHHHHHHHHHHHHTCSTTCSCCCEEC---------
T ss_pred HHHHHHHHHhhcCCCCCChHHHHHHHHHHHHhccCCCCeEEEEECcHHHHHHHHHHHHhCcccccccceEEEecCCcccC
Confidence 0 013889999999998865 55799999999999999999999752 2356677789
Q ss_pred CCCCHHHHHHHHHHHhc-CCCceEEEeecccccccccccCCCEEEEEcCCCCHhHHHHHHHhhhccCCCCcEEEEEEeeC
Q 042857 1121 GSVSVGDRQAAITRFNQ-DKSRFVFLLSTRSCGLGINLATADTVIIYDSDFNPHADIQAMNRAHRIGQSKRLLVYRLVVR 1199 (1404)
Q Consensus 1121 Gs~s~~eRq~~Id~Fn~-~~s~~VfLLSTrAgG~GINL~~AdtVIi~DsdWNP~~d~QAigRahRiGQ~k~V~VYrLvt~ 1199 (1404)
|+++..+|++++++|++ +... ||++|+++|+||||+.|++||+||++|||..++||+|| +| .+++.+|.|++.
T Consensus 675 g~~~~~eR~~~l~~F~~~g~~~--vLVaT~~~~~GIDlp~v~~VI~yd~p~s~~~~iQr~GR-GR---~~~g~~i~l~~~ 748 (797)
T 4a2q_A 675 TGMTLPSQKGVLDAFKTSKDNR--LLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GR---AAGSKCILVTSK 748 (797)
T ss_dssp -------------------CCS--EEEEECC-------CCCSEEEEESCCSCHHHHHTC-----------CCCEEEEECC
T ss_pred CCCCHHHHHHHHHHhhccCCce--EEEEcCchhcCCCchhCCEEEEeCCCCCHHHHHHhcCC-CC---CCCceEEEEEeC
Confidence 99999999999999998 4434 88999999999999999999999999999999999999 55 477889999999
Q ss_pred CCHHHHHHHHHHHHHhh
Q 042857 1200 ASVEERILQLAKKKLML 1216 (1404)
Q Consensus 1200 ~TvEE~Ilq~a~~Kl~L 1216 (1404)
++++++ ......|..+
T Consensus 749 ~~~ee~-~~~~~~ke~~ 764 (797)
T 4a2q_A 749 TEVVEN-EKCNRYKEEM 764 (797)
T ss_dssp HHHHHH-HHHHHHHHHH
T ss_pred CcHHHH-HHHHHHHHHH
Confidence 999998 4444444443
No 11
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=100.00 E-value=1.5e-35 Score=363.17 Aligned_cols=417 Identities=16% Similarity=0.198 Sum_probs=229.9
Q ss_pred CCCCHHHHHHHHHHHHhhccCCcEEEEcCCCchHHHHHHHHHHHHHhhccC--CCcEEEEeCC-CChHHHHHHHHHHCC-
Q 042857 754 GALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKA--KLPCLVLVPL-STMPNWLAEFALWAP- 829 (1404)
Q Consensus 754 ~~L~pyQlegVnwL~~~~~~~~~~ILADEMGLGKTiqaIa~L~~L~~~~~~--~gP~LIVvP~-Sll~nW~rEf~kw~P- 829 (1404)
.+|+|||.+++.+++. +.++|++++||+|||++++..+..++..... .+++|||||. .++.||.++|.+|++
T Consensus 3 ~~~~~~Q~~~i~~~~~----~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~ 78 (555)
T 3tbk_A 3 LKPRNYQLELALPAKK----GKNTIICAPTGCGKTFVSLLICEHHLKKFPCGQKGKVVFFANQIPVYEQQATVFSRYFER 78 (555)
T ss_dssp CCCCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHT
T ss_pred CCCcHHHHHHHHHHhC----CCCEEEEeCCCChHHHHHHHHHHHHHHhcccCCCCEEEEEeCCHHHHHHHHHHHHHHhcc
Confidence 4799999999999864 7899999999999999999888877655431 5689999999 677999999999986
Q ss_pred -CCcEEEEecchhHHHHHHHhhhccCCCCccccccCCCCceEEEeeHHHHHhhhcc--c-cCCCceEEEEccccccCCCc
Q 042857 830 -NLNVVEYHGCAKARAIIRQYEWHASDPDNLNKKTSSYKFNVLLTTYEMILADSSH--L-RGVPWEVLVVDEGHRLKNSG 905 (1404)
Q Consensus 830 -~l~Vvvy~G~~~~R~~ir~~E~~~~~~~~~~~~~~~~kfdVvITTYe~l~~d~~~--L-~~i~w~lVIVDEAHrlKN~~ 905 (1404)
++++..++|+.......... ....+|+|+||+.+...... + ....|++|||||||++.+..
T Consensus 79 ~~~~~~~~~g~~~~~~~~~~~---------------~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~ 143 (555)
T 3tbk_A 79 LGYNIASISGATSDSVSVQHI---------------IEDNDIIILTPQILVNNLNNGAIPSLSVFTLMIFDECHNTSKNH 143 (555)
T ss_dssp TTCCEEEECTTTGGGSCHHHH---------------HHHCSEEEECHHHHHHHHHTSSSCCGGGCSEEEETTGGGCSTTC
T ss_pred CCcEEEEEcCCCcchhhHHHH---------------hcCCCEEEECHHHHHHHHhcCcccccccCCEEEEECccccCCcc
Confidence 78899999976432211111 11468999999999875432 2 23458999999999998866
Q ss_pred cHHHHHHhhc----------ccccEEEEeccCCCCChHHH-------HHHhhhhCCCCCC----ChhHHHHHhcccc---
Q 042857 906 SKLFSLLNSF----------SFQHRVLLTGTPLQNNIGEM-------YNLLNFLQPASFP----SLSSFEEKFNDLT--- 961 (1404)
Q Consensus 906 Sk~~~~L~~l----------~~~~rLLLTGTPlqNnl~EL-------~sLL~fL~P~~f~----s~~~F~~~f~d~~--- 961 (1404)
+ ....+..+ ...++++|||||.+++..++ ..+..+++...+. ....+...+....
T Consensus 144 ~-~~~~~~~~~~~~~~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~ 222 (555)
T 3tbk_A 144 P-YNQIMFRYLDHKLGESRDPLPQVVGLTASVGVGDAKTAEEAMQHICKLCAALDASVIATVRDNVAELEQVVYKPQKIS 222 (555)
T ss_dssp H-HHHHHHHHHHHHTSSCCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHTTCSEEECCCSCHHHHHTTCCCCCEEE
T ss_pred h-HHHHHHHHHHhhhccccCCCCeEEEEecCcccCccccHHHHHHHHHHHHHhcCCeeeeccccCHHHHHhhcCCCceEE
Confidence 4 22222222 22468999999999874333 3333444432111 1122221111100
Q ss_pred -------chHHHHHHHHhhhhhhhhhhHhhhhhcCCCceEEEEEecCCHHHH-----------------------HHHHH
Q 042857 962 -------TTQKVEELKKLVAPHMLRRLKKDAMQNIPPKTERMVPVELSSIQA-----------------------EYYRA 1011 (1404)
Q Consensus 962 -------~~~~i~~L~~lL~p~mLRR~K~dV~~~LPpk~e~iV~V~LS~~Qk-----------------------~~Y~~ 1011 (1404)
.......+..++. -++....++...++..... ....+..... ..|..
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (555)
T 3tbk_A 223 RKVASRTSNTFKCIISQLMK--ETEKLAKDVSEELGKLFQI-QNREFGTQKYEQWIVGVHKACSVFQMADKEEESRVCKA 299 (555)
T ss_dssp EECCCCSCCHHHHHHHHHHH--HHHHHHHTSCHHHHGGGGC-CSCCSSSHHHHHHHHHHHHHHHTCCCSSHHHHHHHHHH
T ss_pred EEecCcccChHHHHHHHHHH--HHHHHHHHHHHhhhhhhhc-ccccccchhhhHHHHHHHHHhhhhhccchhhHHHHHHH
Confidence 0000011111110 0111111111111100000 0000111000 01111
Q ss_pred HHHHHHHHHHhhc------cchhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCcHHHHH----------HH---HHhhhhH
Q 042857 1012 MLTKNYQILRNIG------KGVAQQSMLNIVMQLRKVCNHPYLIPGTEPDSGSVEFLH----------EM---RIKASAK 1072 (1404)
Q Consensus 1012 il~~n~~~L~~~~------kg~~~~sllnilm~LRK~cnHP~L~~~~e~~~~~~e~l~----------~~---~i~~SgK 1072 (1404)
+... ...+.... ...........+..+-.-+.+..+ ......... .. ....++|
T Consensus 300 ~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k 372 (555)
T 3tbk_A 300 LFLY-TSHLRKYNDALIISEDAQMTDALNYLKAFFHDVREAAF------DETERELTRRFEEKLEELEKVSRDPSNENPK 372 (555)
T ss_dssp HHHH-HHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHCC-----------HHHHHHHHHHTTHHHHHHHHHCGGGCCHH
T ss_pred HHHH-HHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhccc------chHHHHHHHHHhhhhhhhhhhccCCCcCCHH
Confidence 0000 00000000 000000000011111000110000 000000000 00 0123789
Q ss_pred HHHHHHHHHHHHHc--CCeEEEEecchhHHHHHHHHHhhhc----------CCceEEEEeCCCCHHHHHHHHHHHhc-CC
Q 042857 1073 LTLLHSMLKVLYKE--GHRVLIFSQMTKLLDILEDYLNIEF----------GPKTYERVDGSVSVGDRQAAITRFNQ-DK 1139 (1404)
Q Consensus 1073 l~~L~kLL~kl~~~--G~KVLIFSq~~~~LDiLed~L~~~f----------~g~~y~rLdGs~s~~eRq~~Id~Fn~-~~ 1139 (1404)
+..|.++|..+... ++++|||++++.+++.|.++|.... .|..+..+||+++..+|++++++|++ +.
T Consensus 373 ~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~ 452 (555)
T 3tbk_A 373 LRDLYLVLQEEYHLKPETKTILFVKTRALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRASGD 452 (555)
T ss_dssp HHHHHHHHHHHHHHCTTCCEEEECSSHHHHHHHHHHHHHCGGGTTCCEEECCC--------------------------C
T ss_pred HHHHHHHHHHHhccCCCceEEEEeCcHHHHHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHHHHhcCCC
Confidence 99999999988765 4899999999999999999998641 14456667779999999999999998 44
Q ss_pred CceEEEeecccccccccccCCCEEEEEcCCCCHhHHHHHHHhhhccCCCCcEEEEEEeeCCCHHHHH
Q 042857 1140 SRFVFLLSTRSCGLGINLATADTVIIYDSDFNPHADIQAMNRAHRIGQSKRLLVYRLVVRASVEERI 1206 (1404)
Q Consensus 1140 s~~VfLLSTrAgG~GINL~~AdtVIi~DsdWNP~~d~QAigRahRiGQ~k~V~VYrLvt~~TvEE~I 1206 (1404)
.. +|++|.++|+|||++.+++||+||++|||..++||+|| |+.+.+.+|.|++.++.++..
T Consensus 453 ~~--vLvaT~~~~~GlDlp~v~~VI~~d~p~s~~~~~Qr~GR----gR~~~g~~~~l~~~~~~~~~~ 513 (555)
T 3tbk_A 453 NN--ILIATSVADEGIDIAECNLVILYEYVGNVIKMIQTRGR----GRARDSKCFLLTSSADVIEKE 513 (555)
T ss_dssp CS--EEEECCCTTCCEETTSCSEEEEESCCSSCCCEECSSCC----CTTTSCEEEEEESCHHHHHHH
T ss_pred ee--EEEEcchhhcCCccccCCEEEEeCCCCCHHHHHHhcCc----CcCCCceEEEEEcCCCHHHHH
Confidence 34 78999999999999999999999999999999999999 666889999999999998874
No 12
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=100.00 E-value=1.4e-35 Score=388.19 Aligned_cols=402 Identities=14% Similarity=0.188 Sum_probs=220.7
Q ss_pred CCCCCHHHHHHHHHHHHhhccCCcEEEEcCCCchHHHHHHHHHHHHHhhccC--CCcEEEEeCCC-ChHHHHHHHHHHCC
Q 042857 753 GGALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKA--KLPCLVLVPLS-TMPNWLAEFALWAP 829 (1404)
Q Consensus 753 g~~L~pyQlegVnwL~~~~~~~~~~ILADEMGLGKTiqaIa~L~~L~~~~~~--~gP~LIVvP~S-ll~nW~rEf~kw~P 829 (1404)
..+|+|||.+++.+++. +.++||+++||+|||++++.++..++..... .+++|||||.. ++.||.++|.+|++
T Consensus 246 ~~~~r~~Q~~ai~~il~----g~~~ll~a~TGsGKTl~~~~~i~~~l~~~~~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~ 321 (936)
T 4a2w_A 246 TKKARSYQIELAQPAIN----GKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFE 321 (936)
T ss_dssp --CCCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHTTTTTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHc----CCCEEEEeCCCchHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHHhc
Confidence 35899999999999865 7899999999999999998888776544321 56899999976 77999999999987
Q ss_pred --CCcEEEEecchhHHHHHHHhhhccCCCCccccccCCCCceEEEeeHHHHHhhhcc--c-cCCCceEEEEccccccCCC
Q 042857 830 --NLNVVEYHGCAKARAIIRQYEWHASDPDNLNKKTSSYKFNVLLTTYEMILADSSH--L-RGVPWEVLVVDEGHRLKNS 904 (1404)
Q Consensus 830 --~l~Vvvy~G~~~~R~~ir~~E~~~~~~~~~~~~~~~~kfdVvITTYe~l~~d~~~--L-~~i~w~lVIVDEAHrlKN~ 904 (1404)
++++..++|+...+...... ....+|+|+||+.+...... + ....|++|||||||++.+.
T Consensus 322 ~~~~~v~~~~G~~~~~~~~~~~---------------~~~~~IvI~Tp~~L~~~l~~~~~~~l~~~~liViDEaH~~~~~ 386 (936)
T 4a2w_A 322 RQGYSVQGISGENFSNVSVEKV---------------IEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGN 386 (936)
T ss_dssp TTTCCEEEECCC-----CCHHH---------------HHHCSEEEECHHHHHHHHHSSSCCCGGGCSEEEEETGGGCSTT
T ss_pred ccCceEEEEECCcchhhHHHHh---------------ccCCCEEEecHHHHHHHHHcCccccccCCCEEEEECccccCCC
Confidence 78999999987543211111 12468999999999875432 2 2235899999999999987
Q ss_pred ccHHHHHHhhc---------ccccEEEEeccCCCCChHHHHHHhhhh-------CCCCC----CChhHHHHHhccccchH
Q 042857 905 GSKLFSLLNSF---------SFQHRVLLTGTPLQNNIGEMYNLLNFL-------QPASF----PSLSSFEEKFNDLTTTQ 964 (1404)
Q Consensus 905 ~Sk~~~~L~~l---------~~~~rLLLTGTPlqNnl~EL~sLL~fL-------~P~~f----~s~~~F~~~f~d~~~~~ 964 (1404)
.+ ....+..+ ...++|+|||||.+++..++..+++.+ +...+ .....+...+
T Consensus 387 ~~-~~~i~~~~~~~~~~~~~~~~~~l~LSATp~~~~~~~l~~~~~~i~~L~~~L~~~~i~~~~~~~~~l~~~~------- 458 (936)
T 4a2w_A 387 HP-YNVLMTRYLEQKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFM------- 458 (936)
T ss_dssp CH-HHHHHHHHHHHHHTTCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHS-------
T ss_pred cc-HHHHHHHHHHHhhccCCCcCeEEEecCCcccccchhHHHHHHHHHHHHHhcCCceeecccccHHHHHHhc-------
Confidence 55 33333222 225689999999987765544433322 21111 1112222211
Q ss_pred HHHHHHHhhhhhhhhhhHhhhhhcCCCceEEEEEec--CCHHHHHHHHHHHHHHHHHHHh--------------------
Q 042857 965 KVEELKKLVAPHMLRRLKKDAMQNIPPKTERMVPVE--LSSIQAEYYRAMLTKNYQILRN-------------------- 1022 (1404)
Q Consensus 965 ~i~~L~~lL~p~mLRR~K~dV~~~LPpk~e~iV~V~--LS~~Qk~~Y~~il~~n~~~L~~-------------------- 1022 (1404)
+......+.+. +.+.....+..++......+..
T Consensus 459 -------------------------~~p~~~~~~~~~~~~~~~~~~l~~l~~~i~~~~~~~l~~~~l~~~~~~~~g~~~y 513 (936)
T 4a2w_A 459 -------------------------NKPEIDVRLVKRRIHNPFAAIISNLMSETEALMRTIAYVDTLSQNSKKDFGTQNY 513 (936)
T ss_dssp -------------------------CCCCEEEEECCCCSCCHHHHHHHHHHHHHHHHHHHC------------CCSSHHH
T ss_pred -------------------------cCCcceEEecccccCcHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccchHHH
Confidence 11111222222 2322223232222221111110
Q ss_pred -------------hc-cch-h----hHHHHHHHHHHHHHhCCCCCCCCCC-------------------CCCCcHHHHHH
Q 042857 1023 -------------IG-KGV-A----QQSMLNIVMQLRKVCNHPYLIPGTE-------------------PDSGSVEFLHE 1064 (1404)
Q Consensus 1023 -------------~~-kg~-~----~~sllnilm~LRK~cnHP~L~~~~e-------------------~~~~~~e~l~~ 1064 (1404)
.. ... . ...+......|++. ++...+.... ........+..
T Consensus 514 ~~~l~~l~k~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~-~~al~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~e~~l~~ 592 (936)
T 4a2w_A 514 EHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKY-NDALIISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTA 592 (936)
T ss_dssp HHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHH-HHHHhhhcchhHHHHHHHHHHHHHHHhhccCCHHHHHHHH
Confidence 00 000 0 00011111111111 0000000000 00000000000
Q ss_pred HH--------------HhhhhHHHHHHHHHHHHH--HcCCeEEEEecchhHHHHHHHHHhhh----------cCCceEEE
Q 042857 1065 MR--------------IKASAKLTLLHSMLKVLY--KEGHRVLIFSQMTKLLDILEDYLNIE----------FGPKTYER 1118 (1404)
Q Consensus 1065 ~~--------------i~~SgKl~~L~kLL~kl~--~~G~KVLIFSq~~~~LDiLed~L~~~----------f~g~~y~r 1118 (1404)
.. ...++|+..|.++|.... ..++|+|||++++.+++.|.++|... +.|..+..
T Consensus 593 ~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~~rvLIF~~t~~~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~ 672 (936)
T 4a2w_A 593 KFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRD 672 (936)
T ss_dssp HHHHHHHHHHHHHTSTTCCCHHHHHHHHHHHHTTTSCTTCCEEEEESSHHHHHHHHHHHHHCSTTSSCCCEEC-------
T ss_pred HHHHHHHHHHHhhhccCCCCHHHHHHHHHHHHHhccCCCCeEEEEeCCHHHHHHHHHHHhhCccccccceeEEecCCCcc
Confidence 00 014789999999998865 45899999999999999999999864 22455667
Q ss_pred EeCCCCHHHHHHHHHHHhc-CCCceEEEeecccccccccccCCCEEEEEcCCCCHhHHHHHHHhhhccCCCCcEEEEEEe
Q 042857 1119 VDGSVSVGDRQAAITRFNQ-DKSRFVFLLSTRSCGLGINLATADTVIIYDSDFNPHADIQAMNRAHRIGQSKRLLVYRLV 1197 (1404)
Q Consensus 1119 LdGs~s~~eRq~~Id~Fn~-~~s~~VfLLSTrAgG~GINL~~AdtVIi~DsdWNP~~d~QAigRahRiGQ~k~V~VYrLv 1197 (1404)
+||+++..+|++++++|++ +... ||++|.++|+||||+.|++||+||++|||..++||+|| + |.+++.+|.|+
T Consensus 673 ~hg~m~~~eR~~il~~Fr~~g~~~--VLVaT~~~~eGIDlp~v~~VI~yD~p~s~~~~iQr~GR-G---R~~~g~vi~Li 746 (936)
T 4a2w_A 673 QTTGMTLPSQKGVLDAFKTSKDNR--LLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-G---RAAGSKCILVT 746 (936)
T ss_dssp ---------------------CCS--EEEEECC------CCCCSEEEEESCCSCSHHHHCC-----------CCCEEEEE
T ss_pred cCCCCCHHHHHHHHHHhhccCCee--EEEEeCchhcCCcchhCCEEEEeCCCCCHHHHHHhcCC-C---CCCCCEEEEEE
Confidence 7888999999999999998 4434 88999999999999999999999999999999999999 4 45778899999
Q ss_pred eCCCHHHHHHHHHHHH
Q 042857 1198 VRASVEERILQLAKKK 1213 (1404)
Q Consensus 1198 t~~TvEE~Ilq~a~~K 1213 (1404)
+.+|++++++....++
T Consensus 747 ~~~t~ee~~~~~~~ke 762 (936)
T 4a2w_A 747 SKTEVVENEKCNRYKE 762 (936)
T ss_dssp SCHHHHHHHHHHHHHH
T ss_pred eCCCHHHHHHHHHHHH
Confidence 9999999877433333
No 13
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=100.00 E-value=7e-33 Score=351.59 Aligned_cols=422 Identities=15% Similarity=0.170 Sum_probs=223.0
Q ss_pred CCCCHHHHHHHHHHHHhhccCCcEEEEcCCCchHHHHHHHHHHHHHhhccC--CCcEEEEeCC-CChHHHHHHHHHHCC-
Q 042857 754 GALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKA--KLPCLVLVPL-STMPNWLAEFALWAP- 829 (1404)
Q Consensus 754 ~~L~pyQlegVnwL~~~~~~~~~~ILADEMGLGKTiqaIa~L~~L~~~~~~--~gP~LIVvP~-Sll~nW~rEf~kw~P- 829 (1404)
..|+|||.+++.|++. +.++|++++||+|||++++.++...+..... .+++|||+|+ +++.||.++|.+|++
T Consensus 12 ~~lr~~Q~~~i~~~l~----g~~~iv~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~lvl~Pt~~L~~Q~~~~~~~~~~~ 87 (696)
T 2ykg_A 12 FKPRNYQLELALPAMK----GKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQNKSVFSKYFER 87 (696)
T ss_dssp -CCCHHHHHHHHHHHT----TCCEEEECCTTSSHHHHHHHHHHHHHHHSCTTCCCCEEEECSSHHHHHHHHHHHHHHTTT
T ss_pred CCccHHHHHHHHHHHc----CCCEEEEcCCCchHHHHHHHHHHHHHHhCccCCCCeEEEEECCHHHHHHHHHHHHHHhcc
Confidence 4799999999999875 7899999999999999999888876554332 2689999998 677999999999987
Q ss_pred -CCcEEEEecchhHHHHHHHhhhccCCCCccccccCCCCceEEEeeHHHHHhhhc--cc-cCCCceEEEEccccccCCCc
Q 042857 830 -NLNVVEYHGCAKARAIIRQYEWHASDPDNLNKKTSSYKFNVLLTTYEMILADSS--HL-RGVPWEVLVVDEGHRLKNSG 905 (1404)
Q Consensus 830 -~l~Vvvy~G~~~~R~~ir~~E~~~~~~~~~~~~~~~~kfdVvITTYe~l~~d~~--~L-~~i~w~lVIVDEAHrlKN~~ 905 (1404)
++++..++|+...+...... ....+|+|+||+.+..... .+ ....|++|||||||++.+..
T Consensus 88 ~~~~v~~~~g~~~~~~~~~~~---------------~~~~~Iiv~Tp~~L~~~l~~~~~~~l~~~~~vViDEaH~~~~~~ 152 (696)
T 2ykg_A 88 HGYRVTGISGATAENVPVEQI---------------VENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQH 152 (696)
T ss_dssp TTCCEEEECSSSCSSSCHHHH---------------HHTCSEEEECHHHHHHHHHTTSSCCGGGCSEEEEETGGGCSTTC
T ss_pred CCceEEEEeCCccccccHHHh---------------ccCCCEEEECHHHHHHHHhcCcccccccccEEEEeCCCcccCcc
Confidence 78899999865322111110 0146899999999987543 22 33468999999999998765
Q ss_pred cHHHHHHhhc---------ccccEEEEeccCCCCC-------hHHHHHHhhhhCCCCCCC---hhHHHHHhc-ccc----
Q 042857 906 SKLFSLLNSF---------SFQHRVLLTGTPLQNN-------IGEMYNLLNFLQPASFPS---LSSFEEKFN-DLT---- 961 (1404)
Q Consensus 906 Sk~~~~L~~l---------~~~~rLLLTGTPlqNn-------l~EL~sLL~fL~P~~f~s---~~~F~~~f~-d~~---- 961 (1404)
+........+ ...++|+|||||..++ +..++.++..++...+.. ...+...|. .+.
T Consensus 153 ~~~~i~~~~l~~~~~~~~~~~~~il~LTATp~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~l~~~~~~p~~~~~ 232 (696)
T 2ykg_A 153 PYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKTTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFR 232 (696)
T ss_dssp HHHHHHHHHHHHHHTTCCSCCCEEEEEESCCCCSSCCSHHHHHHHHHHHHHHTTCCEEECCCTTHHHHHHHSCCCEEEEE
T ss_pred cHHHHHHHHHHHhhcccCCCCCeEEEEeCccccCccccHHHHHHHHHHHHHhcCCceEeecccchHHHHhhcCCCceeEE
Confidence 4322221111 3467899999998544 455555555555433221 112222221 110
Q ss_pred --chHHHHHHHHhhhhh--hhhhhHhhhhhcCCCceEEEEEecCCHHHHHHHHHHHHHHHHH---HHhhccc---hhhHH
Q 042857 962 --TTQKVEELKKLVAPH--MLRRLKKDAMQNIPPKTERMVPVELSSIQAEYYRAMLTKNYQI---LRNIGKG---VAQQS 1031 (1404)
Q Consensus 962 --~~~~i~~L~~lL~p~--mLRR~K~dV~~~LPpk~e~iV~V~LS~~Qk~~Y~~il~~n~~~---L~~~~kg---~~~~s 1031 (1404)
...+...+...+..+ -++.+...+..++ .. +..+..++.....|...+...... +....+. .....
T Consensus 233 ~~~~~~~~~fs~~~~~l~~~i~~l~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (696)
T 2ykg_A 233 KVESRISDKFKYIIAQLMRDTESLAKRICKDL-EN---LSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKA 308 (696)
T ss_dssp ECCCCSCCHHHHHHHHHHHHHHHHHHHHSTTG-GG---SSSCCSCCSSSHHHHHHHHHHHHTSCC------CCHHHHHHH
T ss_pred ecCcccCChHHHHHHHHHHHHHHHHHHHHHHH-HH---hhccccccccchhHHHHHHHHHHHHHHhhcccchhhhHHHHH
Confidence 000000111111110 0111222222110 00 001111111111222211110000 0000000 00001
Q ss_pred HHHHHHHHHHHhCCCCCCCCCC-------------------CCCCcHHHHH-----------HHHH---hhhhHHHHHHH
Q 042857 1032 MLNIVMQLRKVCNHPYLIPGTE-------------------PDSGSVEFLH-----------EMRI---KASAKLTLLHS 1078 (1404)
Q Consensus 1032 llnilm~LRK~cnHP~L~~~~e-------------------~~~~~~e~l~-----------~~~i---~~SgKl~~L~k 1078 (1404)
+......|++.. +|..+.... ........+. .... ..+.|+..|.+
T Consensus 309 l~~~~~~l~~~~-~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~ 387 (696)
T 2ykg_A 309 LFLYTSHLRKYN-DALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCF 387 (696)
T ss_dssp HHHHHHHHHHHH-HHHHHHHHSCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHH
T ss_pred HHHHHHHHHHHh-HHHhccchhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHH
Confidence 111112222211 111110000 0000000000 0000 25789999999
Q ss_pred HHHHHHH--cCCeEEEEecchhHHHHHHHHHhhhc--CCceEEEEe--------CCCCHHHHHHHHHHHhc-CCCceEEE
Q 042857 1079 MLKVLYK--EGHRVLIFSQMTKLLDILEDYLNIEF--GPKTYERVD--------GSVSVGDRQAAITRFNQ-DKSRFVFL 1145 (1404)
Q Consensus 1079 LL~kl~~--~G~KVLIFSq~~~~LDiLed~L~~~f--~g~~y~rLd--------Gs~s~~eRq~~Id~Fn~-~~s~~VfL 1145 (1404)
+|..... .+.++|||++++..++.|.++|.... .++.+..++ |+++..+|++++++|++ +... +|
T Consensus 388 ll~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~~~g~~~--vL 465 (696)
T 2ykg_A 388 ILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHN--IL 465 (696)
T ss_dssp HHHHHHTTCTTCCEEEECSCHHHHHHHHHHHHHCTTCCSCCEEC-----------------------------CCS--CS
T ss_pred HHHHHhccCCCCcEEEEeCcHHHHHHHHHHHHhCCCccccceeEEEccCCCccccCCCHHHHHHHHHHHHhcCCcc--EE
Confidence 9988753 57899999999999999999998751 127788885 49999999999999987 4444 68
Q ss_pred eecccccccccccCCCEEEEEcCCCCHhHHHHHHHhhhccCCCCcEEEEEEeeCCCHHHH
Q 042857 1146 LSTRSCGLGINLATADTVIIYDSDFNPHADIQAMNRAHRIGQSKRLLVYRLVVRASVEER 1205 (1404)
Q Consensus 1146 LSTrAgG~GINL~~AdtVIi~DsdWNP~~d~QAigRahRiGQ~k~V~VYrLvt~~TvEE~ 1205 (1404)
++|.++|+|||++.+++||+||++||+..++|++|| +|. +...+|.|++.+++++.
T Consensus 466 VaT~v~~~GiDip~v~~VI~~d~p~s~~~~~Qr~GR-GR~---~~g~~~~l~~~~~~~~~ 521 (696)
T 2ykg_A 466 IATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRA---RGSKCFLLTSNAGVIEK 521 (696)
T ss_dssp EEEESSCCC---CCCSEEEEESCC--CCCC-------------CCCEEEEEESCHHHHHH
T ss_pred EEechhhcCCcCccCCEEEEeCCCCCHHHHHHhhcc-CcC---CCceEEEEecCCCHHHH
Confidence 999999999999999999999999999999999999 885 56788999998887654
No 14
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=100.00 E-value=3.3e-32 Score=333.33 Aligned_cols=347 Identities=13% Similarity=0.137 Sum_probs=253.0
Q ss_pred CCCHHHHHHHHHHHHhhccCCcEEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEeCCC-ChHHHHHHHHHH--CCCC
Q 042857 755 ALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLS-TMPNWLAEFALW--APNL 831 (1404)
Q Consensus 755 ~L~pyQlegVnwL~~~~~~~~~~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP~S-ll~nW~rEf~kw--~P~l 831 (1404)
+|+|||.+++++++. +.++||+++||+|||++++.++..+... ..+++|||||.. ++.||.++|.+| +|..
T Consensus 113 ~l~~~Q~~ai~~~~~----~~~~ll~~~tGsGKT~~~~~~~~~~~~~--~~~~vlvl~P~~~L~~Q~~~~~~~~~~~~~~ 186 (510)
T 2oca_A 113 EPHWYQKDAVFEGLV----NRRRILNLPTSAGRSLIQALLARYYLEN--YEGKILIIVPTTALTTQMADDFVDYRLFSHA 186 (510)
T ss_dssp CCCHHHHHHHHHHHH----HSEEEEECCSTTTHHHHHHHHHHHHHHH--CSSEEEEEESSHHHHHHHHHHHHHTTSSCGG
T ss_pred CCCHHHHHHHHHHHh----cCCcEEEeCCCCCHHHHHHHHHHHHHhC--CCCeEEEEECcHHHHHHHHHHHHHhhcCCcc
Confidence 899999999999876 4789999999999999998887776543 334899999984 669999999999 6667
Q ss_pred cEEEEecchhHHHHHHHhhhccCCCCccccccCCCCceEEEeeHHHHHhhhccccCCCceEEEEccccccCCCccHHHHH
Q 042857 832 NVVEYHGCAKARAIIRQYEWHASDPDNLNKKTSSYKFNVLLTTYEMILADSSHLRGVPWEVLVVDEGHRLKNSGSKLFSL 911 (1404)
Q Consensus 832 ~Vvvy~G~~~~R~~ir~~E~~~~~~~~~~~~~~~~kfdVvITTYe~l~~d~~~L~~i~w~lVIVDEAHrlKN~~Sk~~~~ 911 (1404)
.+..++|....... .....+|+|+||+.+...... ...+|++|||||+|++.+ ......
T Consensus 187 ~v~~~~~~~~~~~~------------------~~~~~~I~i~T~~~l~~~~~~-~~~~~~liIiDE~H~~~~--~~~~~i 245 (510)
T 2oca_A 187 MIKKIGGGASKDDK------------------YKNDAPVVVGTWQTVVKQPKE-WFSQFGMMMNDECHLATG--KSISSI 245 (510)
T ss_dssp GEEECGGGCCTTGG------------------GCTTCSEEEEEHHHHTTSCGG-GGGGEEEEEEETGGGCCH--HHHHHH
T ss_pred ceEEEecCCccccc------------------cccCCcEEEEeHHHHhhchhh-hhhcCCEEEEECCcCCCc--ccHHHH
Confidence 88888775322110 124678999999998876322 223689999999999976 334555
Q ss_pred Hhhc-ccccEEEEeccCCCCChHHHHHHhhhhCCCCCCChhHHHHHhccccchHHHHHHHHhhhhhhhhhhHhhhhhcCC
Q 042857 912 LNSF-SFQHRVLLTGTPLQNNIGEMYNLLNFLQPASFPSLSSFEEKFNDLTTTQKVEELKKLVAPHMLRRLKKDAMQNIP 990 (1404)
Q Consensus 912 L~~l-~~~~rLLLTGTPlqNnl~EL~sLL~fL~P~~f~s~~~F~~~f~d~~~~~~i~~L~~lL~p~mLRR~K~dV~~~LP 990 (1404)
+..+ ...++|+||||| .+...+++.+..++.+..+.-. ..+.+ ....++
T Consensus 246 l~~~~~~~~~l~lSATp-~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~------------------~~~~l~ 295 (510)
T 2oca_A 246 ISGLNNCMFKFGLSGSL-RDGKANIMQYVGMFGEIFKPVT-----------TSKLM------------------EDGQVT 295 (510)
T ss_dssp GGGCTTCCEEEEEESCG-GGCSSCHHHHHHHHCSEECCCC-----------CC---------------------------
T ss_pred HHhcccCcEEEEEEeCC-CCCcccHHHhHHhhCCeEEeeC-----------HHHHh------------------hCCcCC
Confidence 5777 566889999999 5666667777776665432110 00000 011466
Q ss_pred CceEEEEEecCCHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCcHHHHHHHHHhhh
Q 042857 991 PKTERMVPVELSSIQAEYYRAMLTKNYQILRNIGKGVAQQSMLNIVMQLRKVCNHPYLIPGTEPDSGSVEFLHEMRIKAS 1070 (1404)
Q Consensus 991 pk~e~iV~V~LS~~Qk~~Y~~il~~n~~~L~~~~kg~~~~sllnilm~LRK~cnHP~L~~~~e~~~~~~e~l~~~~i~~S 1070 (1404)
+.....+.+.+......... +.. +.. .+.. .....
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~-------------~~~-----~~~---~~~~------------------------~~~~~ 330 (510)
T 2oca_A 296 ELKINSIFLRYPDEFTTKLK-------------GKT-----YQE---EIKI------------------------ITGLS 330 (510)
T ss_dssp CCEEEEEEEECCHHHHHHHT-------------TCC-----HHH---HHHH------------------------HHTCH
T ss_pred CceEEEEeecCChHHhcccc-------------ccc-----hHH---HHHH------------------------HhccH
Confidence 77777788888765431100 000 000 0011 12223
Q ss_pred hHHHHHHHHHHHHHHc-CCeEEEEecchhHHHHHHHHHhhhcCCceEEEEeCCCCHHHHHHHHHHHhcCCCceEEEeec-
Q 042857 1071 AKLTLLHSMLKVLYKE-GHRVLIFSQMTKLLDILEDYLNIEFGPKTYERVDGSVSVGDRQAAITRFNQDKSRFVFLLST- 1148 (1404)
Q Consensus 1071 gKl~~L~kLL~kl~~~-G~KVLIFSq~~~~LDiLed~L~~~f~g~~y~rLdGs~s~~eRq~~Id~Fn~~~s~~VfLLST- 1148 (1404)
.|...+.+++...... +.++|||+. +..++.|.++|... +..+..+||.++..+|+++++.|+++... +|++|
T Consensus 331 ~~~~~l~~~l~~~~~~~~~~~ivf~~-~~~~~~l~~~L~~~--~~~v~~~~g~~~~~~r~~i~~~f~~g~~~--vLv~T~ 405 (510)
T 2oca_A 331 KRNKWIAKLAIKLAQKDENAFVMFKH-VSHGKAIFDLIKNE--YDKVYYVSGEVDTETRNIMKTLAENGKGI--IIVASY 405 (510)
T ss_dssp HHHHHHHHHHHHHHTTTCEEEEEESS-HHHHHHHHHHHHTT--CSSEEEESSSTTHHHHHHHHHHHHHCCSC--EEEEEH
T ss_pred HHHHHHHHHHHHHHhcCCCeEEEEec-HHHHHHHHHHHHHc--CCCeEEEECCCCHHHHHHHHHHHhCCCCC--EEEEEc
Confidence 5566677777766555 556777777 88888899999876 45899999999999999999999976655 77888
Q ss_pred ccccccccccCCCEEEEEcCCCCHhHHHHHHHhhhccCCCC-cEEEEEEeeCCCHHHHHHH
Q 042857 1149 RSCGLGINLATADTVIIYDSDFNPHADIQAMNRAHRIGQSK-RLLVYRLVVRASVEERILQ 1208 (1404)
Q Consensus 1149 rAgG~GINL~~AdtVIi~DsdWNP~~d~QAigRahRiGQ~k-~V~VYrLvt~~TvEE~Ilq 1208 (1404)
.++++|||++.+++||+++++|++..+.|++||++|.|+.+ .|.||.++...++.+.++.
T Consensus 406 ~~~~~GiDip~v~~vi~~~~~~s~~~~~Q~~GR~gR~g~~~~~v~i~~~~~~~~~~~~~~~ 466 (510)
T 2oca_A 406 GVFSTGISVKNLHHVVLAHGVKSKIIVLQTIGRVLRKHGSKTIATVWDLIDDAGVKPKSAN 466 (510)
T ss_dssp HHHHHSCCCCSEEEEEESSCCCSCCHHHHHHHHHHTTTCCCCCCEEEEEEEECCBCCSSSS
T ss_pred ChhhcccccccCcEEEEeCCCCCHHHHHHHHhcccccCCCCceEEEEEeecchhhhhhhhh
Confidence 99999999999999999999999999999999999999987 7999999998776665544
No 15
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=100.00 E-value=1.3e-32 Score=349.22 Aligned_cols=415 Identities=16% Similarity=0.180 Sum_probs=238.1
Q ss_pred CCCCHHHHHHHHHHHHhhccCCcEEEEcCCCchHHHHHHHHHHHHHhhcc---CCCcEEEEeCCC-ChHHH-HHHHHHHC
Q 042857 754 GALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFK---AKLPCLVLVPLS-TMPNW-LAEFALWA 828 (1404)
Q Consensus 754 ~~L~pyQlegVnwL~~~~~~~~~~ILADEMGLGKTiqaIa~L~~L~~~~~---~~gP~LIVvP~S-ll~nW-~rEf~kw~ 828 (1404)
.+|+|||.+++.+++. +.++||+++||+|||++++.++..++.... ..+++|||+|.. ++.|| .++|.+|+
T Consensus 6 ~~l~~~Q~~~i~~il~----g~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~l~~~~ 81 (699)
T 4gl2_A 6 LQLRPYQMEVAQPALE----GKNIIICLPTGCGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFL 81 (699)
T ss_dssp -CCCHHHHHHHHHHHS----SCCEEECCCTTSCHHHHHHHHHHHHHHHHHHHTCCCCBCCEESCSHHHHHHHHHTHHHHH
T ss_pred CCccHHHHHHHHHHHh----CCCEEEEcCCCCcHHHHHHHHHHHHHHhccccCCCCeEEEEECCHHHHHHHHHHHHHHHc
Confidence 4799999999999876 789999999999999999998887665432 236899999986 66999 99999999
Q ss_pred CC-CcEEEEecchhHHHHHHHhhhccCCCCccccccCCCCceEEEeeHHHHHhhh--------ccccCCCceEEEEcccc
Q 042857 829 PN-LNVVEYHGCAKARAIIRQYEWHASDPDNLNKKTSSYKFNVLLTTYEMILADS--------SHLRGVPWEVLVVDEGH 899 (1404)
Q Consensus 829 P~-l~Vvvy~G~~~~R~~ir~~E~~~~~~~~~~~~~~~~kfdVvITTYe~l~~d~--------~~L~~i~w~lVIVDEAH 899 (1404)
+. +++..++|+.......... ....+|+|+||+.+.... ..+....|++|||||||
T Consensus 82 ~~~~~v~~~~g~~~~~~~~~~~---------------~~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~~~~~~~lvViDEaH 146 (699)
T 4gl2_A 82 KKWYRVIGLSGDTQLKISFPEV---------------VKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECH 146 (699)
T ss_dssp TTTSCEEEEC----CCCCHHHH---------------HHSCSEEEEEHHHHHHHTC--------CCCGGGCSEEEEESGG
T ss_pred CcCceEEEEeCCcchhhHHHhh---------------hcCCCEEEECHHHHHHHHhccccccccceecccCcEEEEECcc
Confidence 87 9999999975432111111 125689999999998643 22344578999999999
Q ss_pred ccCCCcc---HHHHHHhh-c-------------ccccEEEEeccCCCCC-------hHHHHHHhhhhCCCCCC----Chh
Q 042857 900 RLKNSGS---KLFSLLNS-F-------------SFQHRVLLTGTPLQNN-------IGEMYNLLNFLQPASFP----SLS 951 (1404)
Q Consensus 900 rlKN~~S---k~~~~L~~-l-------------~~~~rLLLTGTPlqNn-------l~EL~sLL~fL~P~~f~----s~~ 951 (1404)
++.+... .....+.. + ....+|+|||||..++ ..++..++..+++..+. ...
T Consensus 147 ~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~il~lTATp~~~~~~~~~~~~~~i~~l~~~l~~~~i~~~~~~~~ 226 (699)
T 4gl2_A 147 HTNKEAVYNNIMRHYLMQKLKNNRLKKENKPVIPLPQILGLTASPGVGGATKQAKAEEHILKLCANLDAFTIKTVKENLD 226 (699)
T ss_dssp GCBTTBSSCSHHHHHHHHHHHHHHHHC----CCCCCEEEEECSCCCCCSCCSHHHHHHHHHHHHHHHTCSCCCCCCTTHH
T ss_pred ccCccchHHHHHHHHHHhhhcccccccccccCCCCCEEEEecccccccccccHHHHHHHHHHHHhhcCCCEEEeecCchH
Confidence 9855321 11122221 1 4457899999999863 34455566666662221 112
Q ss_pred HHHHHhcccc------chHHHHHHHHhhhhhhhhhhHhhhhhcCCCceEEEEEecCCHHHHHHHHHHHHHHHH-------
Q 042857 952 SFEEKFNDLT------TTQKVEELKKLVAPHMLRRLKKDAMQNIPPKTERMVPVELSSIQAEYYRAMLTKNYQ------- 1018 (1404)
Q Consensus 952 ~F~~~f~d~~------~~~~i~~L~~lL~p~mLRR~K~dV~~~LPpk~e~iV~V~LS~~Qk~~Y~~il~~n~~------- 1018 (1404)
.+...+.... .......+...+...+ .+.... . .+.|.. .+.. ..|...+.....
T Consensus 227 ~l~~~~~~p~~~~~~~~~~~~~~~~~~l~~l~-~~i~~~-~-~~~~~~------~~g~---~~~~~~~~~~~~~~~~~~~ 294 (699)
T 4gl2_A 227 QLKNQIQEPCKKFAIADATREDPFKEKLLEIM-TRIQTY-C-QMSPMS------DFGT---QPYEQWAIQMEKKAAKEGN 294 (699)
T ss_dssp HHHHHSCCCEEEEEEEC-----CHHHHHHHHH-HHHHHH-H-TCCCCS------CSSS---HHHHHHHHHHHHHHHHHTC
T ss_pred HHhhhcCCCceEEEEcccccCChHHHHHHHHH-HHHHHH-h-ccCcch------hccc---hHHHHHHHHHHHHHHHhhh
Confidence 2322222110 0000001111111111 000000 0 111100 0000 111111100000
Q ss_pred ------------------HHHhhccchhhHHHHHHHHHHHHHhCCCCCCCCCC---CCCCcHHHHHHHHH----------
Q 042857 1019 ------------------ILRNIGKGVAQQSMLNIVMQLRKVCNHPYLIPGTE---PDSGSVEFLHEMRI---------- 1067 (1404)
Q Consensus 1019 ------------------~L~~~~kg~~~~sllnilm~LRK~cnHP~L~~~~e---~~~~~~e~l~~~~i---------- 1067 (1404)
.............+...+..++..... ....+.. .......++.....
T Consensus 295 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~ 373 (699)
T 4gl2_A 295 RKERVCAEHLRKYNEALQINDTIRMIDAYTHLETFYNEEKDKKFA-VIEDDLKKPLKLDETDRFLMTLFFENNKMLKRLA 373 (699)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHC-------------CCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-ccccccccccccchhHHHHHHHHHHHHHHHHHHh
Confidence 000000000000111111111111100 0000000 00001111111100
Q ss_pred ----hhhhHHHHHHHHHHHHHHc---CCeEEEEecchhHHHHHHHHHhhh----cCCceEEEEeCC--------CCHHHH
Q 042857 1068 ----KASAKLTLLHSMLKVLYKE---GHRVLIFSQMTKLLDILEDYLNIE----FGPKTYERVDGS--------VSVGDR 1128 (1404)
Q Consensus 1068 ----~~SgKl~~L~kLL~kl~~~---G~KVLIFSq~~~~LDiLed~L~~~----f~g~~y~rLdGs--------~s~~eR 1128 (1404)
..+.|+..|.++|...... +.++|||+++..+++.|.++|... +.|+.+..++|. ++..+|
T Consensus 374 ~~~~~~~~k~~~L~~~L~~~~~~~~~~~~~IVF~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR 453 (699)
T 4gl2_A 374 ENPEYENEKLTKLRNTIMEQYTRTEESARGIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQ 453 (699)
T ss_dssp TCCC----CSSCSHHHHHHHHHHSSSCCCEEEECSCHHHHHHHHHHHHSSCSCC-----CEECCCSCCCTTCCCCCHHHH
T ss_pred hcCCCCCHHHHHHHHHHHHHHhcCCCCCcEEEEECcHHHHHHHHHHHHhCccccccCcceEEEECCCCccCCCCCCHHHH
Confidence 1457777888888775554 789999999999999999999864 126788899999 999999
Q ss_pred HHHHHHHhcCCCceEEEeecccccccccccCCCEEEEEcCCCCHhHHHHHHHhhhccCCCCcEEEEEEeeCCCHHHHH
Q 042857 1129 QAAITRFNQDKSRFVFLLSTRSCGLGINLATADTVIIYDSDFNPHADIQAMNRAHRIGQSKRLLVYRLVVRASVEERI 1206 (1404)
Q Consensus 1129 q~~Id~Fn~~~s~~VfLLSTrAgG~GINL~~AdtVIi~DsdWNP~~d~QAigRahRiGQ~k~V~VYrLvt~~TvEE~I 1206 (1404)
++++++|+++... +|++|.++|+|||++.+++||+||++|||..+.|++|||+|-| ..++.+...++.+...
T Consensus 454 ~~~~~~F~~g~~~--VLVaT~~~~~GIDip~v~~VI~~d~p~s~~~~~Qr~GRArr~g----~~~~l~~~~~~~~~~~ 525 (699)
T 4gl2_A 454 KEVISKFRTGKIN--LLIATTVAEEGLDIKECNIVIRYGLVTNEIAMVQARGRARADE----STYVLVAHSGSGVIER 525 (699)
T ss_dssp HHHHHHHCC---C--CSEEECSCCTTSCCCSCCCCEEESCCCCHHHHHHHHTTSCSSS----CEEEEEEESSSCSHHH
T ss_pred HHHHHHHhcCCCc--EEEEccccccCCccccCCEEEEeCCCCCHHHHHHHcCCCCCCC----ceEEEEEeCCchHHHH
Confidence 9999999876545 7899999999999999999999999999999999999986655 3445556666644433
No 16
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=99.97 E-value=2e-29 Score=296.07 Aligned_cols=330 Identities=17% Similarity=0.204 Sum_probs=228.4
Q ss_pred CCCHHHHHHHHHHHHhhccCCcEEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEeCCC-ChHHHHHHHHHHC---CC
Q 042857 755 ALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLS-TMPNWLAEFALWA---PN 830 (1404)
Q Consensus 755 ~L~pyQlegVnwL~~~~~~~~~~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP~S-ll~nW~rEf~kw~---P~ 830 (1404)
.|+|||.+++.+++. +.++|++++||+|||++++..+...+.......++|||||.. ++.||.+++.+|. |+
T Consensus 30 ~~~~~Q~~~i~~~~~----~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~ 105 (391)
T 1xti_A 30 HPSEVQHECIPQAIL----GMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPN 105 (391)
T ss_dssp SCCHHHHHHHHHHTT----TCCEEEECSSCSSHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHHHHHHHHHHHTTTCTT
T ss_pred CCCHHHHHHHHHHhc----CCcEEEECCCCCcHHHHHHHHHHHhhcccCCCeeEEEECCCHHHHHHHHHHHHHHHhhCCC
Confidence 599999999988765 789999999999999998877776654444455899999994 6689999999986 57
Q ss_pred CcEEEEecchhHHHHHHHhhhccCCCCccccccCCCCceEEEeeHHHHHhhh--ccccCCCceEEEEccccccCCCcc--
Q 042857 831 LNVVEYHGCAKARAIIRQYEWHASDPDNLNKKTSSYKFNVLLTTYEMILADS--SHLRGVPWEVLVVDEGHRLKNSGS-- 906 (1404)
Q Consensus 831 l~Vvvy~G~~~~R~~ir~~E~~~~~~~~~~~~~~~~kfdVvITTYe~l~~d~--~~L~~i~w~lVIVDEAHrlKN~~S-- 906 (1404)
+++..++|+........... ....+|+|+||+.+.... ..+....|++|||||||++.+...
T Consensus 106 ~~~~~~~g~~~~~~~~~~~~--------------~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vViDEaH~~~~~~~~~ 171 (391)
T 1xti_A 106 VKVAVFFGGLSIKKDEEVLK--------------KNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMR 171 (391)
T ss_dssp CCEEEECTTSCHHHHHHHHH--------------HSCCSEEEECHHHHHHHHHTTSSCCTTCSEEEECSHHHHTSSHHHH
T ss_pred eEEEEEeCCCCHHHHHHHHh--------------cCCCCEEEECHHHHHHHHHcCCccccccCEEEEeCHHHHhhccchH
Confidence 89999998765544332221 124589999999997643 223345789999999999976422
Q ss_pred -HHHHHHhhcc-cccEEEEeccCCCCChHHHHHHhhhhCCCCCCChhHHHHHhccccchHHHHHHHHhhhhhhhhhhHhh
Q 042857 907 -KLFSLLNSFS-FQHRVLLTGTPLQNNIGEMYNLLNFLQPASFPSLSSFEEKFNDLTTTQKVEELKKLVAPHMLRRLKKD 984 (1404)
Q Consensus 907 -k~~~~L~~l~-~~~rLLLTGTPlqNnl~EL~sLL~fL~P~~f~s~~~F~~~f~d~~~~~~i~~L~~lL~p~mLRR~K~d 984 (1404)
.....+..+. ....++|||||-.. +.++.. .++. . |..+.. ...
T Consensus 172 ~~~~~~~~~~~~~~~~i~~SAT~~~~-~~~~~~--~~~~---------------~---------------~~~~~~-~~~ 217 (391)
T 1xti_A 172 RDVQEIFRMTPHEKQVMMFSATLSKE-IRPVCR--KFMQ---------------D---------------PMEIFV-DDE 217 (391)
T ss_dssp HHHHHHHHTSCSSSEEEEEESSCCST-HHHHHH--HHCS---------------S---------------CEEEEC-CCC
T ss_pred HHHHHHHhhCCCCceEEEEEeeCCHH-HHHHHH--HHcC---------------C---------------CeEEEe-cCc
Confidence 1222333333 44578999998432 111110 0000 0 000000 000
Q ss_pred hhhcCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCcHHHHHH
Q 042857 985 AMQNIPPKTERMVPVELSSIQAEYYRAMLTKNYQILRNIGKGVAQQSMLNIVMQLRKVCNHPYLIPGTEPDSGSVEFLHE 1064 (1404)
Q Consensus 985 V~~~LPpk~e~iV~V~LS~~Qk~~Y~~il~~n~~~L~~~~kg~~~~sllnilm~LRK~cnHP~L~~~~e~~~~~~e~l~~ 1064 (1404)
....+.......+.+
T Consensus 218 ~~~~~~~~~~~~~~~----------------------------------------------------------------- 232 (391)
T 1xti_A 218 TKLTLHGLQQYYVKL----------------------------------------------------------------- 232 (391)
T ss_dssp CCCCCTTCEEEEEEC-----------------------------------------------------------------
T ss_pred cccCcccceEEEEEc-----------------------------------------------------------------
Confidence 000000111111111
Q ss_pred HHHhhhhHHHHHHHHHHHHHHcCCeEEEEecchhHHHHHHHHHhhhcCCceEEEEeCCCCHHHHHHHHHHHhcCCCceEE
Q 042857 1065 MRIKASAKLTLLHSMLKVLYKEGHRVLIFSQMTKLLDILEDYLNIEFGPKTYERVDGSVSVGDRQAAITRFNQDKSRFVF 1144 (1404)
Q Consensus 1065 ~~i~~SgKl~~L~kLL~kl~~~G~KVLIFSq~~~~LDiLed~L~~~f~g~~y~rLdGs~s~~eRq~~Id~Fn~~~s~~Vf 1144 (1404)
....|...|..++... .+.++|||++....++.+..+|... ++.+..++|+++..+|+.+++.|+++... +
T Consensus 233 ---~~~~~~~~l~~~l~~~--~~~~~lvf~~~~~~~~~l~~~L~~~--~~~~~~~~~~~~~~~r~~~~~~f~~~~~~--v 303 (391)
T 1xti_A 233 ---KDNEKNRKLFDLLDVL--EFNQVVIFVKSVQRCIALAQLLVEQ--NFPAIAIHRGMPQEERLSRYQQFKDFQRR--I 303 (391)
T ss_dssp ---CGGGHHHHHHHHHHHS--CCSEEEEECSCHHHHHHHHHHHHHT--TCCEEEECTTSCHHHHHHHHHHHHTTCCS--E
T ss_pred ---CchhHHHHHHHHHHhc--CCCcEEEEeCcHHHHHHHHHHHHhC--CCcEEEEeCCCCHHHHHHHHHHHhcCCCc--E
Confidence 0123444555555543 6789999999999999999999876 78899999999999999999999876655 8
Q ss_pred EeecccccccccccCCCEEEEEcCCCCHhHHHHHHHhhhccCCCCcEEEEEEeeCCCHHHHHHHHHHHH
Q 042857 1145 LLSTRSCGLGINLATADTVIIYDSDFNPHADIQAMNRAHRIGQSKRLLVYRLVVRASVEERILQLAKKK 1213 (1404)
Q Consensus 1145 LLSTrAgG~GINL~~AdtVIi~DsdWNP~~d~QAigRahRiGQ~k~V~VYrLvt~~TvEE~Ilq~a~~K 1213 (1404)
|++|.++++|||++.+++||+||++|++..+.|++||++|.|+...+.+ |++.. -++.+++....+
T Consensus 304 lv~T~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~--~~~~~-~~~~~~~~~~~~ 369 (391)
T 1xti_A 304 LVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAIT--FVSDE-NDAKILNDVQDR 369 (391)
T ss_dssp EEESCCCSSCBCCTTEEEEEESSCCSSHHHHHHHHCBCSSSCCCCEEEE--EECSH-HHHHHHHHHHHH
T ss_pred EEECChhhcCCCcccCCEEEEeCCCCCHHHHHHhcccccCCCCceEEEE--EEccc-chHHHHHHHHHH
Confidence 8999999999999999999999999999999999999999998766544 44442 244555544443
No 17
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=99.97 E-value=2.6e-30 Score=322.71 Aligned_cols=362 Identities=16% Similarity=0.154 Sum_probs=221.3
Q ss_pred ccCCccC-CCCCCCHHHHHHHHHHHHhhccC-CcEEEEcCCCchHHHHHHHHHHHHHhhc------cCCCcEEEEeCC-C
Q 042857 745 TEQPEEL-KGGALFPHQLEALNWLRKCWHKS-KNVILADEMGLGKTVSACAFISSLYCEF------KAKLPCLVLVPL-S 815 (1404)
Q Consensus 745 ~~qP~~l-~g~~L~pyQlegVnwL~~~~~~~-~~~ILADEMGLGKTiqaIa~L~~L~~~~------~~~gP~LIVvP~-S 815 (1404)
...|.+. .+..|+|||.+++++++..+.++ .++||+++||+|||++++.++..++... ...+++|||||. +
T Consensus 167 ~~~~~~~~~~~~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~~~~~~~l~~~~~~~~~~~~~~~vlil~P~~~ 246 (590)
T 3h1t_A 167 LLSPYHHVSGYSPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVAFQISWKLWSARWNRTGDYRKPRILFLADRNV 246 (590)
T ss_dssp HTCCCCCC----CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHHHHHHTTCCSSCSSSCCCEEEEEC---
T ss_pred hcCCccccCCCCchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHHHHHHHHHHhcccccccccCCCeEEEEeCCHH
Confidence 3444432 34589999999999999888776 5589999999999999999888877543 145689999995 5
Q ss_pred ChHHHH-HHHHHHCCCCcEEEEecchhHHHHHHHhhhccCCCCccccccCCCCceEEEeeHHHHHhhh------ccccCC
Q 042857 816 TMPNWL-AEFALWAPNLNVVEYHGCAKARAIIRQYEWHASDPDNLNKKTSSYKFNVLLTTYEMILADS------SHLRGV 888 (1404)
Q Consensus 816 ll~nW~-rEf~kw~P~l~Vvvy~G~~~~R~~ir~~E~~~~~~~~~~~~~~~~kfdVvITTYe~l~~d~------~~L~~i 888 (1404)
++.||. ++|..|.+.+ ..+.+. ......+|+|+||+.+.... ..+...
T Consensus 247 L~~Q~~~~~~~~~~~~~--~~~~~~-----------------------~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~ 301 (590)
T 3h1t_A 247 LVDDPKDKTFTPFGDAR--HKIEGG-----------------------KVVKSREIYFAIYQSIASDERRPGLYKEFPQD 301 (590)
T ss_dssp --------CCTTTCSSE--EECCC-------------------------CCSSCSEEEEEGGGC------CCGGGGSCTT
T ss_pred HHHHHHHHHHHhcchhh--hhhhcc-----------------------CCCCCCcEEEEEhhhhccccccccccccCCCC
Confidence 669999 8888776432 222211 11235789999999987642 234455
Q ss_pred CceEEEEccccccCCCc-cHHHHHHhhcccccEEEEeccCCCCChHHHHHHhhhhCCCCCCChhHHHHHhccccchHHHH
Q 042857 889 PWEVLVVDEGHRLKNSG-SKLFSLLNSFSFQHRVLLTGTPLQNNIGEMYNLLNFLQPASFPSLSSFEEKFNDLTTTQKVE 967 (1404)
Q Consensus 889 ~w~lVIVDEAHrlKN~~-Sk~~~~L~~l~~~~rLLLTGTPlqNnl~EL~sLL~fL~P~~f~s~~~F~~~f~d~~~~~~i~ 967 (1404)
.|++|||||||++.+.. +.....+..+...++|+|||||..+...+++.++. +..+.
T Consensus 302 ~~~lvIiDEaH~~~~~~~~~~~~il~~~~~~~~l~lTATP~~~~~~~~~~~f~---~~~~~------------------- 359 (590)
T 3h1t_A 302 FFDLIIIDECHRGSARDNSNWREILEYFEPAFQIGMTATPLREDNRDTYRYFG---NPIYT------------------- 359 (590)
T ss_dssp SCSEEEESCCC---------CHHHHHHSTTSEEEEEESSCSCTTTHHHHHHSC---SCSEE-------------------
T ss_pred ccCEEEEECCccccccchHHHHHHHHhCCcceEEEeccccccccchhHHHHcC---CceEe-------------------
Confidence 69999999999998653 44556677777788999999999887766655432 11100
Q ss_pred HHHHhhhhhhhhhhHhhhhhcCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHhCCCC
Q 042857 968 ELKKLVAPHMLRRLKKDAMQNIPPKTERMVPVELSSIQAEYYRAMLTKNYQILRNIGKGVAQQSMLNIVMQLRKVCNHPY 1047 (1404)
Q Consensus 968 ~L~~lL~p~mLRR~K~dV~~~LPpk~e~iV~V~LS~~Qk~~Y~~il~~n~~~L~~~~kg~~~~sllnilm~LRK~cnHP~ 1047 (1404)
+-+..... ...+++.....+...............+......+..
T Consensus 360 --------~~~~~~i~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------- 404 (590)
T 3h1t_A 360 --------YSLRQGID--DGFLAPYRVHRVISEVDAAGWRPSKGDVDRFGREIPD------------------------- 404 (590)
T ss_dssp --------ECHHHHHH--HTSSCCEEEEEEEETTCC--------------------------------------------
T ss_pred --------cCHHHHhh--CCccCCcEEEEeeeeeecccccccccccccccccccc-------------------------
Confidence 00000000 0124444444454444322211111111100000000
Q ss_pred CCCCCCCCCCcHHHHHHHHHhhhhHHHHHHHHHHHHH---HcCCeEEEEecchhHHHHHHHHHhhhcC------CceEEE
Q 042857 1048 LIPGTEPDSGSVEFLHEMRIKASAKLTLLHSMLKVLY---KEGHRVLIFSQMTKLLDILEDYLNIEFG------PKTYER 1118 (1404)
Q Consensus 1048 L~~~~e~~~~~~e~l~~~~i~~SgKl~~L~kLL~kl~---~~G~KVLIFSq~~~~LDiLed~L~~~f~------g~~y~r 1118 (1404)
........ . ..+....+...+.+.|..+. ..+.|+||||+....++.|..+|...++ +..+.+
T Consensus 405 ----~~~~~~~~---~-~~~~~~~r~~~i~~~l~~~l~~~~~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~ 476 (590)
T 3h1t_A 405 ----GEYQTKDF---E-RVIALKARTDAFAKHLTDFMKRTDRFAKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDYVAR 476 (590)
T ss_dssp --------CCSH---H-HHHHHHHTHHHHHHHHHHHHHHHCTTSEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEEE
T ss_pred ----ccCCHHHh---h-hHhcChHHHHHHHHHHHHHHHhcCCCccEEEEECCHHHHHHHHHHHHHhhhhhhccCCCeEEE
Confidence 00000000 0 01112333444444443333 3468999999999999999999976532 122678
Q ss_pred EeCCCCHHHHHHHHHHHhcCCC-ceEEEeecccccccccccCCCEEEEEcCCCCHhHHHHHHHhhhccCC---CCcEEEE
Q 042857 1119 VDGSVSVGDRQAAITRFNQDKS-RFVFLLSTRSCGLGINLATADTVIIYDSDFNPHADIQAMNRAHRIGQ---SKRLLVY 1194 (1404)
Q Consensus 1119 LdGs~s~~eRq~~Id~Fn~~~s-~~VfLLSTrAgG~GINL~~AdtVIi~DsdWNP~~d~QAigRahRiGQ---~k~V~VY 1194 (1404)
++|.++. +|++++++|+++.. ..++|++|.++++|||++.+++||+++++|++..+.|++||++|.|+ +..+.||
T Consensus 477 i~g~~~~-~r~~~l~~F~~~~~~~~~ilvtt~~l~~GiDip~v~~Vi~~~~~~s~~~~~Q~iGR~~R~~~~~~k~~~~I~ 555 (590)
T 3h1t_A 477 VTSEEGK-IGKGHLSRFQELETSTPVILTTSQLLTTGVDAPTCKNVVLARVVNSMSEFKQIVGRGTRLREDYGKLWFNII 555 (590)
T ss_dssp CSSTTHH-HHHHHHHHHHCTTCCCCCEEEESSTTTTTCCCTTEEEEEEESCCCCHHHHHHHHTTSCCCBGGGTBSCEEEE
T ss_pred EeCCChH-HHHHHHHHHhCCCCCCCEEEEECChhhcCccchheeEEEEEecCCChHHHHHHHhhhcccCccCCCCEEEEE
Confidence 9999763 79999999998765 46789999999999999999999999999999999999999999995 5668888
Q ss_pred EEe
Q 042857 1195 RLV 1197 (1404)
Q Consensus 1195 rLv 1197 (1404)
.++
T Consensus 556 D~~ 558 (590)
T 3h1t_A 556 DYT 558 (590)
T ss_dssp ECS
T ss_pred ecC
Confidence 876
No 18
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=99.97 E-value=2.1e-28 Score=289.03 Aligned_cols=315 Identities=16% Similarity=0.181 Sum_probs=221.9
Q ss_pred CCCHHHHHHHHHHHHhhccCCcEEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEeCCC-ChHHHHHHHHHHCC--CC
Q 042857 755 ALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLS-TMPNWLAEFALWAP--NL 831 (1404)
Q Consensus 755 ~L~pyQlegVnwL~~~~~~~~~~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP~S-ll~nW~rEf~kw~P--~l 831 (1404)
.|+|||.+++.+++. +.++|+..+||+|||++++..+...........++|||||.. +..||.+++..+++ ++
T Consensus 43 ~~~~~Q~~~i~~i~~----~~~~li~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~ 118 (400)
T 1s2m_A 43 KPSPIQEEAIPVAIT----GRDILARAKNGTGKTAAFVIPTLEKVKPKLNKIQALIMVPTRELALQTSQVVRTLGKHCGI 118 (400)
T ss_dssp SCCHHHHHHHHHHHH----TCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTTTC
T ss_pred CCCHHHHHHHHHHhc----CCCEEEECCCCcHHHHHHHHHHHHHHhhccCCccEEEEcCCHHHHHHHHHHHHHHhcccCc
Confidence 599999999999876 688999999999999998877766654433455799999985 55899999999986 57
Q ss_pred cEEEEecchhHHHHHHHhhhccCCCCccccccCCCCceEEEeeHHHHHhhh--ccccCCCceEEEEccccccCCCcc--H
Q 042857 832 NVVEYHGCAKARAIIRQYEWHASDPDNLNKKTSSYKFNVLLTTYEMILADS--SHLRGVPWEVLVVDEGHRLKNSGS--K 907 (1404)
Q Consensus 832 ~Vvvy~G~~~~R~~ir~~E~~~~~~~~~~~~~~~~kfdVvITTYe~l~~d~--~~L~~i~w~lVIVDEAHrlKN~~S--k 907 (1404)
.+..++|....+...... ....+|+|+|++.+.... ..+...++++|||||||++.+... .
T Consensus 119 ~~~~~~g~~~~~~~~~~~---------------~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~~~~~~~~~~ 183 (400)
T 1s2m_A 119 SCMVTTGGTNLRDDILRL---------------NETVHILVGTPGRVLDLASRKVADLSDCSLFIMDEADKMLSRDFKTI 183 (400)
T ss_dssp CEEEECSSSCHHHHHHHT---------------TSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEESHHHHSSHHHHHH
T ss_pred eEEEEeCCcchHHHHHHh---------------cCCCCEEEEchHHHHHHHHhCCcccccCCEEEEeCchHhhhhchHHH
Confidence 788888876655433221 135689999999986543 223345689999999999875431 1
Q ss_pred HHHHHhhcc-cccEEEEeccCCCCChHHHHHHhhhhCCCCCCChhHHHHHhccccchHHHHHHHHhhhhhhhhhhHhhhh
Q 042857 908 LFSLLNSFS-FQHRVLLTGTPLQNNIGEMYNLLNFLQPASFPSLSSFEEKFNDLTTTQKVEELKKLVAPHMLRRLKKDAM 986 (1404)
Q Consensus 908 ~~~~L~~l~-~~~rLLLTGTPlqNnl~EL~sLL~fL~P~~f~s~~~F~~~f~d~~~~~~i~~L~~lL~p~mLRR~K~dV~ 986 (1404)
+...+..+. ....++||||+-. .+..++. .+ +..|+.+... ..
T Consensus 184 ~~~i~~~~~~~~~~i~lSAT~~~----~~~~~~~---------------~~--------------~~~~~~~~~~-~~-- 227 (400)
T 1s2m_A 184 IEQILSFLPPTHQSLLFSATFPL----TVKEFMV---------------KH--------------LHKPYEINLM-EE-- 227 (400)
T ss_dssp HHHHHTTSCSSCEEEEEESCCCH----HHHHHHH---------------HH--------------CSSCEEESCC-SS--
T ss_pred HHHHHHhCCcCceEEEEEecCCH----HHHHHHH---------------HH--------------cCCCeEEEec-cc--
Confidence 222233333 4457899999721 1110000 00 0001000000 00
Q ss_pred hcCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCcHHHHHHHH
Q 042857 987 QNIPPKTERMVPVELSSIQAEYYRAMLTKNYQILRNIGKGVAQQSMLNIVMQLRKVCNHPYLIPGTEPDSGSVEFLHEMR 1066 (1404)
Q Consensus 987 ~~LPpk~e~iV~V~LS~~Qk~~Y~~il~~n~~~L~~~~kg~~~~sllnilm~LRK~cnHP~L~~~~e~~~~~~e~l~~~~ 1066 (1404)
...+........+
T Consensus 228 ~~~~~~~~~~~~~------------------------------------------------------------------- 240 (400)
T 1s2m_A 228 LTLKGITQYYAFV------------------------------------------------------------------- 240 (400)
T ss_dssp CBCTTEEEEEEEC-------------------------------------------------------------------
T ss_pred cccCCceeEEEEe-------------------------------------------------------------------
Confidence 0001111111111
Q ss_pred HhhhhHHHHHHHHHHHHHHcCCeEEEEecchhHHHHHHHHHhhhcCCceEEEEeCCCCHHHHHHHHHHHhcCCCceEEEe
Q 042857 1067 IKASAKLTLLHSMLKVLYKEGHRVLIFSQMTKLLDILEDYLNIEFGPKTYERVDGSVSVGDRQAAITRFNQDKSRFVFLL 1146 (1404)
Q Consensus 1067 i~~SgKl~~L~kLL~kl~~~G~KVLIFSq~~~~LDiLed~L~~~f~g~~y~rLdGs~s~~eRq~~Id~Fn~~~s~~VfLL 1146 (1404)
....|+..|..++.. ..+.++|||++....++.+..+|... ++.+..++|.++..+|+.+++.|+++... +|+
T Consensus 241 -~~~~k~~~l~~~~~~--~~~~~~lVf~~~~~~~~~l~~~L~~~--~~~~~~~~~~~~~~~r~~~~~~f~~g~~~--vLv 313 (400)
T 1s2m_A 241 -EERQKLHCLNTLFSK--LQINQAIIFCNSTNRVELLAKKITDL--GYSCYYSHARMKQQERNKVFHEFRQGKVR--TLV 313 (400)
T ss_dssp -CGGGHHHHHHHHHHH--SCCSEEEEECSSHHHHHHHHHHHHHH--TCCEEEECTTSCHHHHHHHHHHHHTTSSS--EEE
T ss_pred -chhhHHHHHHHHHhh--cCCCcEEEEEecHHHHHHHHHHHHhc--CCCeEEecCCCCHHHHHHHHHHHhcCCCc--EEE
Confidence 012344555555544 25679999999999999999999876 78899999999999999999999876655 889
Q ss_pred ecccccccccccCCCEEEEEcCCCCHhHHHHHHHhhhccCCCCcEEEEEEeeCC
Q 042857 1147 STRSCGLGINLATADTVIIYDSDFNPHADIQAMNRAHRIGQSKRLLVYRLVVRA 1200 (1404)
Q Consensus 1147 STrAgG~GINL~~AdtVIi~DsdWNP~~d~QAigRahRiGQ~k~V~VYrLvt~~ 1200 (1404)
+|.++++|||++.+++||+||++|++..++|++||++|.|+... +|.|++..
T Consensus 314 ~T~~~~~Gidip~~~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~--~~~l~~~~ 365 (400)
T 1s2m_A 314 CSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGL--AINLINWN 365 (400)
T ss_dssp ESSCSSSSCCCTTEEEEEESSCCSSHHHHHHHHCBSSCTTCCEE--EEEEECGG
T ss_pred EcCccccCCCccCCCEEEEeCCCCCHHHHHHhcchhcCCCCCce--EEEEeccc
Confidence 99999999999999999999999999999999999999998654 45566665
No 19
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=99.96 E-value=1.6e-29 Score=293.19 Aligned_cols=310 Identities=20% Similarity=0.266 Sum_probs=221.5
Q ss_pred CCCHHHHHHHHHHHHhhccCCcEEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEeCCC-ChHHHHHHHHHHCC--CC
Q 042857 755 ALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLS-TMPNWLAEFALWAP--NL 831 (1404)
Q Consensus 755 ~L~pyQlegVnwL~~~~~~~~~~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP~S-ll~nW~rEf~kw~P--~l 831 (1404)
.|+|||.+++.+++. .+.++|+..+||+|||++++..+..+.... ...++|||+|.. +..||.+++..|++ .+
T Consensus 28 ~~~~~Q~~~i~~~~~---~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~-~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~ 103 (367)
T 1hv8_A 28 KPTDIQMKVIPLFLN---DEYNIVAQARTGSGKTASFAIPLIELVNEN-NGIEAIILTPTRELAIQVADEIESLKGNKNL 103 (367)
T ss_dssp SCCHHHHHHHHHHHH---TCSEEEEECCSSSSHHHHHHHHHHHHSCSS-SSCCEEEECSCHHHHHHHHHHHHHHHCSSCC
T ss_pred CCCHHHHHHHHHHhC---CCCCEEEECCCCChHHHHHHHHHHHHhccc-CCCcEEEEcCCHHHHHHHHHHHHHHhCCCCc
Confidence 699999999998876 236899999999999999888777665332 345799999985 55999999999975 56
Q ss_pred cEEEEecchhHHHHHHHhhhccCCCCccccccCCCCceEEEeeHHHHHhhhc--cccCCCceEEEEccccccCCCc--cH
Q 042857 832 NVVEYHGCAKARAIIRQYEWHASDPDNLNKKTSSYKFNVLLTTYEMILADSS--HLRGVPWEVLVVDEGHRLKNSG--SK 907 (1404)
Q Consensus 832 ~Vvvy~G~~~~R~~ir~~E~~~~~~~~~~~~~~~~kfdVvITTYe~l~~d~~--~L~~i~w~lVIVDEAHrlKN~~--Sk 907 (1404)
.+..++|........... ...+|+|+||+.+..... .+...+|++|||||||++.+.+ ..
T Consensus 104 ~v~~~~~~~~~~~~~~~~----------------~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEah~~~~~~~~~~ 167 (367)
T 1hv8_A 104 KIAKIYGGKAIYPQIKAL----------------KNANIVVGTPGRILDHINRGTLNLKNVKYFILDEADEMLNMGFIKD 167 (367)
T ss_dssp CEEEECTTSCHHHHHHHH----------------HTCSEEEECHHHHHHHHHTTCSCTTSCCEEEEETHHHHHTTTTHHH
T ss_pred eEEEEECCcchHHHHhhc----------------CCCCEEEecHHHHHHHHHcCCcccccCCEEEEeCchHhhhhchHHH
Confidence 788888876654433322 146899999999876432 2334568999999999997654 23
Q ss_pred HHHHHhhcc-cccEEEEeccCCCCChHHHHHHhhhhCCCCCCChhHHHHHhccccchHHHHHHHHhhhhhhhhhhHhhhh
Q 042857 908 LFSLLNSFS-FQHRVLLTGTPLQNNIGEMYNLLNFLQPASFPSLSSFEEKFNDLTTTQKVEELKKLVAPHMLRRLKKDAM 986 (1404)
Q Consensus 908 ~~~~L~~l~-~~~rLLLTGTPlqNnl~EL~sLL~fL~P~~f~s~~~F~~~f~d~~~~~~i~~L~~lL~p~mLRR~K~dV~ 986 (1404)
+...+..+. ....++|||||... +..++.. .+.+.. .+ .
T Consensus 168 ~~~~~~~~~~~~~~i~~SAT~~~~----~~~~~~~--------------~~~~~~---------------~~-------~ 207 (367)
T 1hv8_A 168 VEKILNACNKDKRILLFSATMPRE----ILNLAKK--------------YMGDYS---------------FI-------K 207 (367)
T ss_dssp HHHHHHTSCSSCEEEEECSSCCHH----HHHHHHH--------------HCCSEE---------------EE-------E
T ss_pred HHHHHHhCCCCceEEEEeeccCHH----HHHHHHH--------------HcCCCe---------------EE-------E
Confidence 344444443 45568899999321 1111100 000000 00 0
Q ss_pred hcCCC-ceEEEEEecCCHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCcHHHHHHH
Q 042857 987 QNIPP-KTERMVPVELSSIQAEYYRAMLTKNYQILRNIGKGVAQQSMLNIVMQLRKVCNHPYLIPGTEPDSGSVEFLHEM 1065 (1404)
Q Consensus 987 ~~LPp-k~e~iV~V~LS~~Qk~~Y~~il~~n~~~L~~~~kg~~~~sllnilm~LRK~cnHP~L~~~~e~~~~~~e~l~~~ 1065 (1404)
...+. .....+.+.
T Consensus 208 ~~~~~~~~~~~~~~~----------------------------------------------------------------- 222 (367)
T 1hv8_A 208 AKINANIEQSYVEVN----------------------------------------------------------------- 222 (367)
T ss_dssp CCSSSSSEEEEEECC-----------------------------------------------------------------
T ss_pred ecCCCCceEEEEEeC-----------------------------------------------------------------
Confidence 00000 000111110
Q ss_pred HHhhhhHHHHHHHHHHHHHHcCCeEEEEecchhHHHHHHHHHhhhcCCceEEEEeCCCCHHHHHHHHHHHhcCCCceEEE
Q 042857 1066 RIKASAKLTLLHSMLKVLYKEGHRVLIFSQMTKLLDILEDYLNIEFGPKTYERVDGSVSVGDRQAAITRFNQDKSRFVFL 1145 (1404)
Q Consensus 1066 ~i~~SgKl~~L~kLL~kl~~~G~KVLIFSq~~~~LDiLed~L~~~f~g~~y~rLdGs~s~~eRq~~Id~Fn~~~s~~VfL 1145 (1404)
...|+..|.+++. ..+.++|||++....++.+..+|... ++.+..++|+++..+|+.+++.|+++... +|
T Consensus 223 ---~~~~~~~l~~~l~---~~~~~~lvf~~~~~~~~~l~~~L~~~--~~~~~~~~~~~~~~~r~~~~~~f~~~~~~--vl 292 (367)
T 1hv8_A 223 ---ENERFEALCRLLK---NKEFYGLVFCKTKRDTKELASMLRDI--GFKAGAIHGDLSQSQREKVIRLFKQKKIR--IL 292 (367)
T ss_dssp ---GGGHHHHHHHHHC---STTCCEEEECSSHHHHHHHHHHHHHT--TCCEEEECSSSCHHHHHHHHHHHHTTSSS--EE
T ss_pred ---hHHHHHHHHHHHh---cCCCcEEEEECCHHHHHHHHHHHHhc--CCCeEEeeCCCCHHHHHHHHHHHHcCCCe--EE
Confidence 1223444444443 56789999999999999999999876 78899999999999999999999876555 88
Q ss_pred eecccccccccccCCCEEEEEcCCCCHhHHHHHHHhhhccCCCCcEEEEEEeeCCC
Q 042857 1146 LSTRSCGLGINLATADTVIIYDSDFNPHADIQAMNRAHRIGQSKRLLVYRLVVRAS 1201 (1404)
Q Consensus 1146 LSTrAgG~GINL~~AdtVIi~DsdWNP~~d~QAigRahRiGQ~k~V~VYrLvt~~T 1201 (1404)
++|.++++|||++.+++||+||++|++..+.|++||++|.|+...+ |.|++...
T Consensus 293 v~T~~~~~Gid~~~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~--~~~~~~~~ 346 (367)
T 1hv8_A 293 IATDVMSRGIDVNDLNCVINYHLPQNPESYMHRIGRTGRAGKKGKA--ISIINRRE 346 (367)
T ss_dssp EECTTHHHHCCCSCCSEEEESSCCSCHHHHHHHSTTTCCSSSCCEE--EEEECTTS
T ss_pred EECChhhcCCCcccCCEEEEecCCCCHHHhhhcccccccCCCccEE--EEEEcHHH
Confidence 9999999999999999999999999999999999999999987755 44556553
No 20
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=99.96 E-value=2.7e-28 Score=289.31 Aligned_cols=317 Identities=20% Similarity=0.254 Sum_probs=225.5
Q ss_pred CCCHHHHHHHHHHHHhhccCCcEEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEeCCC-ChHHHHHHHHHHCC--CC
Q 042857 755 ALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLS-TMPNWLAEFALWAP--NL 831 (1404)
Q Consensus 755 ~L~pyQlegVnwL~~~~~~~~~~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP~S-ll~nW~rEf~kw~P--~l 831 (1404)
.|+|||.+++.+++. +.++|++.+||+|||++++..+...+.......++|||||.. +..||.++|..|.. ++
T Consensus 59 ~~~~~Q~~ai~~i~~----~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~ 134 (410)
T 2j0s_A 59 KPSAIQQRAIKQIIK----GRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTRELAVQIQKGLLALGDYMNV 134 (410)
T ss_dssp SCCHHHHHHHHHHHT----TCCEEEECCTTSSHHHHHHHHHHHTCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTTTC
T ss_pred CCCHHHHHHHHHHhC----CCCEEEECCCCCCchHHHHHHHHHHHhhccCCceEEEEcCcHHHHHHHHHHHHHHhccCCe
Confidence 599999999999865 788999999999999998887776654344556899999986 55899999999974 46
Q ss_pred cEEEEecchhHHHHHHHhhhccCCCCccccccCCCCceEEEeeHHHHHhhh--ccccCCCceEEEEccccccCCCc--cH
Q 042857 832 NVVEYHGCAKARAIIRQYEWHASDPDNLNKKTSSYKFNVLLTTYEMILADS--SHLRGVPWEVLVVDEGHRLKNSG--SK 907 (1404)
Q Consensus 832 ~Vvvy~G~~~~R~~ir~~E~~~~~~~~~~~~~~~~kfdVvITTYe~l~~d~--~~L~~i~w~lVIVDEAHrlKN~~--Sk 907 (1404)
.+..++|........+... ...+|+|+|++.+.... ..+....|++|||||||++.+.+ ..
T Consensus 135 ~~~~~~g~~~~~~~~~~~~---------------~~~~ivv~Tp~~l~~~l~~~~~~~~~~~~vViDEah~~~~~~~~~~ 199 (410)
T 2j0s_A 135 QCHACIGGTNVGEDIRKLD---------------YGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQ 199 (410)
T ss_dssp CEEEECTTSCHHHHHHHHH---------------HCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHHTSTTTHHH
T ss_pred EEEEEECCCCHHHHHHHhh---------------cCCCEEEcCHHHHHHHHHhCCccHhheeEEEEccHHHHHhhhhHHH
Confidence 7778888766555443321 13589999999887543 23444568999999999987654 33
Q ss_pred HHHHHhhcc-cccEEEEeccCCCCChHHHHHHhhhhCCCCCCChhHHHHHhccccchHHHHHHHHhhhhhhhhhhHhhhh
Q 042857 908 LFSLLNSFS-FQHRVLLTGTPLQNNIGEMYNLLNFLQPASFPSLSSFEEKFNDLTTTQKVEELKKLVAPHMLRRLKKDAM 986 (1404)
Q Consensus 908 ~~~~L~~l~-~~~rLLLTGTPlqNnl~EL~sLL~fL~P~~f~s~~~F~~~f~d~~~~~~i~~L~~lL~p~mLRR~K~dV~ 986 (1404)
+...+..+. ....++|||||-. ++..++...... |..+.- ....
T Consensus 200 ~~~i~~~~~~~~~~i~~SAT~~~----~~~~~~~~~~~~-----------------------------~~~~~~--~~~~ 244 (410)
T 2j0s_A 200 IYDVYRYLPPATQVVLISATLPH----EILEMTNKFMTD-----------------------------PIRILV--KRDE 244 (410)
T ss_dssp HHHHHTTSCTTCEEEEEESCCCH----HHHTTGGGTCSS-----------------------------CEEECC--CGGG
T ss_pred HHHHHHhCccCceEEEEEcCCCH----HHHHHHHHHcCC-----------------------------CEEEEe--cCcc
Confidence 444444443 4467899999832 222222111100 000000 0000
Q ss_pred hcCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCcHHHHHHHH
Q 042857 987 QNIPPKTERMVPVELSSIQAEYYRAMLTKNYQILRNIGKGVAQQSMLNIVMQLRKVCNHPYLIPGTEPDSGSVEFLHEMR 1066 (1404)
Q Consensus 987 ~~LPpk~e~iV~V~LS~~Qk~~Y~~il~~n~~~L~~~~kg~~~~sllnilm~LRK~cnHP~L~~~~e~~~~~~e~l~~~~ 1066 (1404)
..++......+.+.-.
T Consensus 245 ~~~~~~~~~~~~~~~~---------------------------------------------------------------- 260 (410)
T 2j0s_A 245 LTLEGIKQFFVAVERE---------------------------------------------------------------- 260 (410)
T ss_dssp CSCTTEEEEEEEESST----------------------------------------------------------------
T ss_pred ccCCCceEEEEEeCcH----------------------------------------------------------------
Confidence 0111112222222110
Q ss_pred HhhhhHHHHHHHHHHHHHHcCCeEEEEecchhHHHHHHHHHhhhcCCceEEEEeCCCCHHHHHHHHHHHhcCCCceEEEe
Q 042857 1067 IKASAKLTLLHSMLKVLYKEGHRVLIFSQMTKLLDILEDYLNIEFGPKTYERVDGSVSVGDRQAAITRFNQDKSRFVFLL 1146 (1404)
Q Consensus 1067 i~~SgKl~~L~kLL~kl~~~G~KVLIFSq~~~~LDiLed~L~~~f~g~~y~rLdGs~s~~eRq~~Id~Fn~~~s~~VfLL 1146 (1404)
..|+..|..++... .+.++|||++....++.|..+|... ++.+..+||.++..+|+.+++.|+++... +|+
T Consensus 261 ---~~k~~~l~~~~~~~--~~~~~lVf~~~~~~~~~l~~~L~~~--~~~~~~~h~~~~~~~r~~~~~~f~~g~~~--vlv 331 (410)
T 2j0s_A 261 ---EWKFDTLCDLYDTL--TITQAVIFCNTKRKVDWLTEKMREA--NFTVSSMHGDMPQKERESIMKEFRSGASR--VLI 331 (410)
T ss_dssp ---THHHHHHHHHHHHH--TSSEEEEECSSHHHHHHHHHHHHHT--TCCCEEECTTSCHHHHHHHHHHHHHTSSC--EEE
T ss_pred ---HhHHHHHHHHHHhc--CCCcEEEEEcCHHHHHHHHHHHHhC--CCceEEeeCCCCHHHHHHHHHHHHCCCCC--EEE
Confidence 12334444444443 3569999999999999999999876 78899999999999999999999977655 889
Q ss_pred ecccccccccccCCCEEEEEcCCCCHhHHHHHHHhhhccCCCCcEEEEEEeeCC
Q 042857 1147 STRSCGLGINLATADTVIIYDSDFNPHADIQAMNRAHRIGQSKRLLVYRLVVRA 1200 (1404)
Q Consensus 1147 STrAgG~GINL~~AdtVIi~DsdWNP~~d~QAigRahRiGQ~k~V~VYrLvt~~ 1200 (1404)
+|.++++|||++.+++||+||++|++..++|++||++|.|+... +|.|++..
T Consensus 332 ~T~~~~~Gidi~~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~--~~~~~~~~ 383 (410)
T 2j0s_A 332 STDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGV--AINFVKND 383 (410)
T ss_dssp ECGGGSSSCCCTTEEEEEESSCCSSHHHHHHHHTTSSGGGCCEE--EEEEEEGG
T ss_pred ECChhhCcCCcccCCEEEEECCCCCHHHHHHhcccccCCCCceE--EEEEecHH
Confidence 99999999999999999999999999999999999999998654 45566654
No 21
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=99.96 E-value=1.7e-28 Score=281.60 Aligned_cols=311 Identities=16% Similarity=0.243 Sum_probs=214.2
Q ss_pred CCCHHHHHHHHHHHHhhccCCcEEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEeCCC-ChHHHHHHHHHHCC--CC
Q 042857 755 ALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLS-TMPNWLAEFALWAP--NL 831 (1404)
Q Consensus 755 ~L~pyQlegVnwL~~~~~~~~~~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP~S-ll~nW~rEf~kw~P--~l 831 (1404)
.|+|||.+++.++.. +.++++..+||+|||++++..+... ..++|||+|.. ++.||.+++..|.+ ++
T Consensus 16 ~l~~~Q~~~i~~i~~----~~~~lv~~~TGsGKT~~~~~~~~~~------~~~~liv~P~~~L~~q~~~~~~~~~~~~~~ 85 (337)
T 2z0m_A 16 NFTEVQSKTIPLMLQ----GKNVVVRAKTGSGKTAAYAIPILEL------GMKSLVVTPTRELTRQVASHIRDIGRYMDT 85 (337)
T ss_dssp SCCHHHHHHHHHHHT----TCCEEEECCTTSSHHHHHHHHHHHH------TCCEEEECSSHHHHHHHHHHHHHHTTTSCC
T ss_pred CCCHHHHHHHHHHhc----CCCEEEEcCCCCcHHHHHHHHHHhh------cCCEEEEeCCHHHHHHHHHHHHHHhhhcCC
Confidence 699999999998875 7899999999999999887766542 35799999985 55999999999875 57
Q ss_pred cEEEEecchhHHHHHHHhhhccCCCCccccccCCCCceEEEeeHHHHHhhh--ccccCCCceEEEEccccccCCCc--cH
Q 042857 832 NVVEYHGCAKARAIIRQYEWHASDPDNLNKKTSSYKFNVLLTTYEMILADS--SHLRGVPWEVLVVDEGHRLKNSG--SK 907 (1404)
Q Consensus 832 ~Vvvy~G~~~~R~~ir~~E~~~~~~~~~~~~~~~~kfdVvITTYe~l~~d~--~~L~~i~w~lVIVDEAHrlKN~~--Sk 907 (1404)
.+..++|........... ...+|+|+|++.+.... ..+....|++||+||||++.+.+ ..
T Consensus 86 ~~~~~~~~~~~~~~~~~~----------------~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~~~~~~~~~ 149 (337)
T 2z0m_A 86 KVAEVYGGMPYKAQINRV----------------RNADIVVATPGRLLDLWSKGVIDLSSFEIVIIDEADLMFEMGFIDD 149 (337)
T ss_dssp CEEEECTTSCHHHHHHHH----------------TTCSEEEECHHHHHHHHHTTSCCGGGCSEEEEESHHHHHHTTCHHH
T ss_pred cEEEEECCcchHHHHhhc----------------CCCCEEEECHHHHHHHHHcCCcchhhCcEEEEEChHHhhccccHHH
Confidence 788888876554433322 13689999999987642 22333468899999999986543 33
Q ss_pred HHHHHhhccccc-EEEEeccCCCCChHHHHHHhhhhCCCCCCChhHHHHHhccccchHHHHHHHHhhhhhhhhhhHhhhh
Q 042857 908 LFSLLNSFSFQH-RVLLTGTPLQNNIGEMYNLLNFLQPASFPSLSSFEEKFNDLTTTQKVEELKKLVAPHMLRRLKKDAM 986 (1404)
Q Consensus 908 ~~~~L~~l~~~~-rLLLTGTPlqNnl~EL~sLL~fL~P~~f~s~~~F~~~f~d~~~~~~i~~L~~lL~p~mLRR~K~dV~ 986 (1404)
+...+..+.... .++|||||-.. +..++.- .+.... .+.. .
T Consensus 150 ~~~~~~~~~~~~~~~~~SAT~~~~----~~~~~~~--------------~~~~~~---------------~~~~-----~ 191 (337)
T 2z0m_A 150 IKIILAQTSNRKITGLFSATIPEE----IRKVVKD--------------FITNYE---------------EIEA-----C 191 (337)
T ss_dssp HHHHHHHCTTCSEEEEEESCCCHH----HHHHHHH--------------HSCSCE---------------EEEC-----S
T ss_pred HHHHHhhCCcccEEEEEeCcCCHH----HHHHHHH--------------hcCCce---------------eeec-----c
Confidence 444555555444 45789998321 1111110 000000 0000 0
Q ss_pred hcCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCcHHHHHHHH
Q 042857 987 QNIPPKTERMVPVELSSIQAEYYRAMLTKNYQILRNIGKGVAQQSMLNIVMQLRKVCNHPYLIPGTEPDSGSVEFLHEMR 1066 (1404)
Q Consensus 987 ~~LPpk~e~iV~V~LS~~Qk~~Y~~il~~n~~~L~~~~kg~~~~sllnilm~LRK~cnHP~L~~~~e~~~~~~e~l~~~~ 1066 (1404)
...+......+.+.... +
T Consensus 192 ~~~~~~~~~~~~~~~~~--~------------------------------------------------------------ 209 (337)
T 2z0m_A 192 IGLANVEHKFVHVKDDW--R------------------------------------------------------------ 209 (337)
T ss_dssp GGGGGEEEEEEECSSSS--H------------------------------------------------------------
T ss_pred cccCCceEEEEEeChHH--H------------------------------------------------------------
Confidence 00111111111111100 0
Q ss_pred HhhhhHHHHHHHHHHHHHHcCCeEEEEecchhHHHHHHHHHhhhcCCceEEEEeCCCCHHHHHHHHHHHhcCCCceEEEe
Q 042857 1067 IKASAKLTLLHSMLKVLYKEGHRVLIFSQMTKLLDILEDYLNIEFGPKTYERVDGSVSVGDRQAAITRFNQDKSRFVFLL 1146 (1404)
Q Consensus 1067 i~~SgKl~~L~kLL~kl~~~G~KVLIFSq~~~~LDiLed~L~~~f~g~~y~rLdGs~s~~eRq~~Id~Fn~~~s~~VfLL 1146 (1404)
.++ ..+. ...+.++|||++....++.|..+|. .+..++|+++..+|.+++++|+++... +|+
T Consensus 210 ----~~~----~~~~--~~~~~~~lvf~~~~~~~~~l~~~l~------~~~~~~~~~~~~~r~~~~~~f~~~~~~--vlv 271 (337)
T 2z0m_A 210 ----SKV----QALR--ENKDKGVIVFVRTRNRVAKLVRLFD------NAIELRGDLPQSVRNRNIDAFREGEYD--MLI 271 (337)
T ss_dssp ----HHH----HHHH--TCCCSSEEEECSCHHHHHHHHTTCT------TEEEECTTSCHHHHHHHHHHHHTTSCS--EEE
T ss_pred ----HHH----HHHH--hCCCCcEEEEEcCHHHHHHHHHHhh------hhhhhcCCCCHHHHHHHHHHHHcCCCc--EEE
Confidence 000 0111 1357899999999999999888776 367899999999999999999876655 889
Q ss_pred ecccccccccccCCCEEEEEcCCCCHhHHHHHHHhhhccCCCCcEEEEEEeeCCCHHHHHHHHH
Q 042857 1147 STRSCGLGINLATADTVIIYDSDFNPHADIQAMNRAHRIGQSKRLLVYRLVVRASVEERILQLA 1210 (1404)
Q Consensus 1147 STrAgG~GINL~~AdtVIi~DsdWNP~~d~QAigRahRiGQ~k~V~VYrLvt~~TvEE~Ilq~a 1210 (1404)
+|.++++|||++.+++||+||++|++..+.|++||++|.||...+.+|.. ....+.+.|.+..
T Consensus 272 ~T~~~~~Gid~~~~~~Vi~~~~~~s~~~~~Q~~GR~gR~g~~g~~~~~~~-~~~~~~~~i~~~~ 334 (337)
T 2z0m_A 272 TTDVASRGLDIPLVEKVINFDAPQDLRTYIHRIGRTGRMGRKGEAITFIL-NEYWLEKEVKKVS 334 (337)
T ss_dssp ECHHHHTTCCCCCBSEEEESSCCSSHHHHHHHHTTBCGGGCCEEEEEEES-SCHHHHHHHC---
T ss_pred EcCccccCCCccCCCEEEEecCCCCHHHhhHhcCccccCCCCceEEEEEe-CcHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999888877765 4444555554443
No 22
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=99.96 E-value=9.3e-29 Score=290.36 Aligned_cols=316 Identities=16% Similarity=0.200 Sum_probs=116.4
Q ss_pred CCCHHHHHHHHHHHHhhccCCcEEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEeCCC-ChHHHHHHHHHHCC--CC
Q 042857 755 ALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLS-TMPNWLAEFALWAP--NL 831 (1404)
Q Consensus 755 ~L~pyQlegVnwL~~~~~~~~~~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP~S-ll~nW~rEf~kw~P--~l 831 (1404)
.|+|||.+++.++.. +.++++..+||+|||++++..+...+.......++|||||.. +..||.+++.++++ ++
T Consensus 43 ~~~~~Q~~~i~~i~~----~~~~lv~~~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~ 118 (394)
T 1fuu_A 43 EPSAIQQRAIMPIIE----GHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMALAFHMDI 118 (394)
T ss_dssp SCCHHHHHHHHHHHH----TCCEEECCCSSHHHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHTTTSCC
T ss_pred CCCHHHHHHHHHHhC----CCCEEEECCCCChHHHHHHHHHHHHhhccCCCCCEEEEcCCHHHHHHHHHHHHHHhccCCe
Confidence 699999999999877 688999999999999997766665544444456899999985 55899999999975 57
Q ss_pred cEEEEecchhHHHHHHHhhhccCCCCccccccCCCCceEEEeeHHHHHhhhc--cccCCCceEEEEccccccCCC--ccH
Q 042857 832 NVVEYHGCAKARAIIRQYEWHASDPDNLNKKTSSYKFNVLLTTYEMILADSS--HLRGVPWEVLVVDEGHRLKNS--GSK 907 (1404)
Q Consensus 832 ~Vvvy~G~~~~R~~ir~~E~~~~~~~~~~~~~~~~kfdVvITTYe~l~~d~~--~L~~i~w~lVIVDEAHrlKN~--~Sk 907 (1404)
.+..++|........... ...+|+|+|++.+..... .+....|++|||||||++... ...
T Consensus 119 ~~~~~~g~~~~~~~~~~~----------------~~~~i~v~T~~~l~~~~~~~~~~~~~~~~vIiDEah~~~~~~~~~~ 182 (394)
T 1fuu_A 119 KVHACIGGTSFVEDAEGL----------------RDAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEMLSSGFKEQ 182 (394)
T ss_dssp CEEEECSSCCHHHHHHHH----------------HHCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHHHHTTCHHH
T ss_pred eEEEEeCCCchHHHHhhc----------------CCCCEEEECHHHHHHHHHhCCcchhhCcEEEEEChHHhhCCCcHHH
Confidence 888888876544332221 145799999999876432 344457899999999998543 334
Q ss_pred HHHHHhhcc-cccEEEEeccCCCCChHHHHHHhhhhCCCCCCChhHHHHHhccccchHHHHHHHHhhhhhhhhhhHhhhh
Q 042857 908 LFSLLNSFS-FQHRVLLTGTPLQNNIGEMYNLLNFLQPASFPSLSSFEEKFNDLTTTQKVEELKKLVAPHMLRRLKKDAM 986 (1404)
Q Consensus 908 ~~~~L~~l~-~~~rLLLTGTPlqNnl~EL~sLL~fL~P~~f~s~~~F~~~f~d~~~~~~i~~L~~lL~p~mLRR~K~dV~ 986 (1404)
+...+..+. ....++|||||-. ++..++. ..+
T Consensus 183 ~~~~~~~~~~~~~~i~~SAT~~~----~~~~~~~------------------------------~~~------------- 215 (394)
T 1fuu_A 183 IYQIFTLLPPTTQVVLLSATMPN----DVLEVTT------------------------------KFM------------- 215 (394)
T ss_dssp HHHHHHHSCTTCEEEEECSSCCH----HHHHHHH------------------------------HHC-------------
T ss_pred HHHHHHhCCCCceEEEEEEecCH----HHHHHHH------------------------------Hhc-------------
Confidence 445555554 3457889999821 1111000 000
Q ss_pred hcCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCcHHHHHHHH
Q 042857 987 QNIPPKTERMVPVELSSIQAEYYRAMLTKNYQILRNIGKGVAQQSMLNIVMQLRKVCNHPYLIPGTEPDSGSVEFLHEMR 1066 (1404)
Q Consensus 987 ~~LPpk~e~iV~V~LS~~Qk~~Y~~il~~n~~~L~~~~kg~~~~sllnilm~LRK~cnHP~L~~~~e~~~~~~e~l~~~~ 1066 (1404)
.... .+.+....... .. + .+ -+...
T Consensus 216 ---~~~~--~~~~~~~~~~~---~~--------------------~-------~~----~~~~~---------------- 240 (394)
T 1fuu_A 216 ---RNPV--RILVKKDELTL---EG--------------------I-------KQ----FYVNV---------------- 240 (394)
T ss_dssp ---CSCE--EEEECC-----------------------------------------------------------------
T ss_pred ---CCCe--EEEecCccccC---CC--------------------c-------eE----EEEEc----------------
Confidence 0000 01111000000 00 0 00 00000
Q ss_pred HhhhhHHHHHHHHHHHHHHcCCeEEEEecchhHHHHHHHHHhhhcCCceEEEEeCCCCHHHHHHHHHHHhcCCCceEEEe
Q 042857 1067 IKASAKLTLLHSMLKVLYKEGHRVLIFSQMTKLLDILEDYLNIEFGPKTYERVDGSVSVGDRQAAITRFNQDKSRFVFLL 1146 (1404)
Q Consensus 1067 i~~SgKl~~L~kLL~kl~~~G~KVLIFSq~~~~LDiLed~L~~~f~g~~y~rLdGs~s~~eRq~~Id~Fn~~~s~~VfLL 1146 (1404)
.....|...|..++... .+.++|||++....++.+..+|... ++.+..++|+++..+|+.+++.|+++... +|+
T Consensus 241 ~~~~~~~~~l~~~~~~~--~~~~~lVf~~~~~~~~~l~~~L~~~--~~~~~~~~~~~~~~~r~~~~~~f~~~~~~--vlv 314 (394)
T 1fuu_A 241 EEEEYKYECLTDLYDSI--SVTQAVIFCNTRRKVEELTTKLRND--KFTVSAIYSDLPQQERDTIMKEFRSGSSR--ILI 314 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CchhhHHHHHHHHHhcC--CCCcEEEEECCHHHHHHHHHHHHHc--CCeEEEeeCCCCHHHHHHHHHHHHCCCCc--EEE
Confidence 00112445555555543 4579999999999999999999876 77889999999999999999999865544 889
Q ss_pred ecccccccccccCCCEEEEEcCCCCHhHHHHHHHhhhccCCCCcEEEEEEeeCC
Q 042857 1147 STRSCGLGINLATADTVIIYDSDFNPHADIQAMNRAHRIGQSKRLLVYRLVVRA 1200 (1404)
Q Consensus 1147 STrAgG~GINL~~AdtVIi~DsdWNP~~d~QAigRahRiGQ~k~V~VYrLvt~~ 1200 (1404)
+|.++++|||++.+++||+||++|++..+.|++||++|.|+...+. .|++..
T Consensus 315 ~T~~~~~Gldi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~--~~~~~~ 366 (394)
T 1fuu_A 315 STDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAI--NFVTNE 366 (394)
T ss_dssp ------------------------------------------------------
T ss_pred ECChhhcCCCcccCCEEEEeCCCCCHHHHHHHcCcccCCCCCceEE--EEEchh
Confidence 9999999999999999999999999999999999999999876554 445554
No 23
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=99.95 E-value=8.4e-27 Score=273.12 Aligned_cols=326 Identities=17% Similarity=0.201 Sum_probs=219.2
Q ss_pred CCCHHHHHHHHHHHHhhccCCcEEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEeCCC-ChHHHHHHHHHHCC--CC
Q 042857 755 ALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLS-TMPNWLAEFALWAP--NL 831 (1404)
Q Consensus 755 ~L~pyQlegVnwL~~~~~~~~~~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP~S-ll~nW~rEf~kw~P--~l 831 (1404)
.|+|||.+++.+++.. .+.++|+..+||+|||++++..+..........+++|||||.. ++.||.+++..+.. .+
T Consensus 27 ~~~~~Q~~~i~~~~~~--~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~ 104 (395)
T 3pey_A 27 KPSKIQERALPLLLHN--PPRNMIAQSQSGTGKTAAFSLTMLTRVNPEDASPQAICLAPSRELARQTLEVVQEMGKFTKI 104 (395)
T ss_dssp SCCHHHHHHHHHHHCS--SCCCEEEECCTTSCHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHTTTSCC
T ss_pred CCCHHHHHHHHHHHcC--CCCeEEEECCCCCcHHHHHHHHHHHHhccCCCCccEEEECCCHHHHHHHHHHHHHHhcccCe
Confidence 6999999999988652 3489999999999999998887776654444556899999997 55899999999863 45
Q ss_pred cEEEEecchhHHHHHHHhhhccCCCCccccccCCCCceEEEeeHHHHHhhh--ccccCCCceEEEEccccccCCCcc---
Q 042857 832 NVVEYHGCAKARAIIRQYEWHASDPDNLNKKTSSYKFNVLLTTYEMILADS--SHLRGVPWEVLVVDEGHRLKNSGS--- 906 (1404)
Q Consensus 832 ~Vvvy~G~~~~R~~ir~~E~~~~~~~~~~~~~~~~kfdVvITTYe~l~~d~--~~L~~i~w~lVIVDEAHrlKN~~S--- 906 (1404)
.+..++|.... .......+|+|+|++.+.... ..+...+|++|||||||++.+...
T Consensus 105 ~~~~~~~~~~~-------------------~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEah~~~~~~~~~~ 165 (395)
T 3pey_A 105 TSQLIVPDSFE-------------------KNKQINAQVIVGTPGTVLDLMRRKLMQLQKIKIFVLDEADNMLDQQGLGD 165 (395)
T ss_dssp CEEEESTTSSC-------------------TTSCBCCSEEEECHHHHHHHHHTTCBCCTTCCEEEEETHHHHHHSTTHHH
T ss_pred eEEEEecCchh-------------------hhccCCCCEEEEcHHHHHHHHHcCCcccccCCEEEEEChhhhcCccccHH
Confidence 56666553211 112236789999999987643 233345689999999999865222
Q ss_pred HHHHHHhhcc-cccEEEEeccCCCCChHHHHHHhhhhCCCCCCChhHHHHHhccccchHHHHHHHHhhhhhhhhhhHhhh
Q 042857 907 KLFSLLNSFS-FQHRVLLTGTPLQNNIGEMYNLLNFLQPASFPSLSSFEEKFNDLTTTQKVEELKKLVAPHMLRRLKKDA 985 (1404)
Q Consensus 907 k~~~~L~~l~-~~~rLLLTGTPlqNnl~EL~sLL~fL~P~~f~s~~~F~~~f~d~~~~~~i~~L~~lL~p~mLRR~K~dV 985 (1404)
.....+..+. ....++|||||-. .+..++..+.+.. ..+.-...
T Consensus 166 ~~~~~~~~~~~~~~~i~~SAT~~~----~~~~~~~~~~~~~-----------------------------~~~~~~~~-- 210 (395)
T 3pey_A 166 QCIRVKRFLPKDTQLVLFSATFAD----AVRQYAKKIVPNA-----------------------------NTLELQTN-- 210 (395)
T ss_dssp HHHHHHHTSCTTCEEEEEESCCCH----HHHHHHHHHSCSC-----------------------------EEECCCGG--
T ss_pred HHHHHHHhCCCCcEEEEEEecCCH----HHHHHHHHhCCCC-----------------------------eEEEcccc--
Confidence 2222333333 3456889999831 1111111111100 00000000
Q ss_pred hhcCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCcHHHHHHH
Q 042857 986 MQNIPPKTERMVPVELSSIQAEYYRAMLTKNYQILRNIGKGVAQQSMLNIVMQLRKVCNHPYLIPGTEPDSGSVEFLHEM 1065 (1404)
Q Consensus 986 ~~~LPpk~e~iV~V~LS~~Qk~~Y~~il~~n~~~L~~~~kg~~~~sllnilm~LRK~cnHP~L~~~~e~~~~~~e~l~~~ 1065 (1404)
....+......+.+. .
T Consensus 211 ~~~~~~~~~~~~~~~-~--------------------------------------------------------------- 226 (395)
T 3pey_A 211 EVNVDAIKQLYMDCK-N--------------------------------------------------------------- 226 (395)
T ss_dssp GCSCTTEEEEEEECS-S---------------------------------------------------------------
T ss_pred ccccccccEEEEEcC-c---------------------------------------------------------------
Confidence 001111111111111 0
Q ss_pred HHhhhhHHHHHHHHHHHHHHcCCeEEEEecchhHHHHHHHHHhhhcCCceEEEEeCCCCHHHHHHHHHHHhcCCCceEEE
Q 042857 1066 RIKASAKLTLLHSMLKVLYKEGHRVLIFSQMTKLLDILEDYLNIEFGPKTYERVDGSVSVGDRQAAITRFNQDKSRFVFL 1145 (1404)
Q Consensus 1066 ~i~~SgKl~~L~kLL~kl~~~G~KVLIFSq~~~~LDiLed~L~~~f~g~~y~rLdGs~s~~eRq~~Id~Fn~~~s~~VfL 1145 (1404)
...|+..|..++... .+.++|||++....++.+..+|... ++.+..++|.++..+|+++++.|+++... +|
T Consensus 227 ---~~~~~~~l~~~~~~~--~~~~~lvf~~~~~~~~~l~~~l~~~--~~~~~~~~~~~~~~~r~~~~~~f~~g~~~--vl 297 (395)
T 3pey_A 227 ---EADKFDVLTELYGLM--TIGSSIIFVATKKTANVLYGKLKSE--GHEVSILHGDLQTQERDRLIDDFREGRSK--VL 297 (395)
T ss_dssp ---HHHHHHHHHHHHTTT--TSSEEEEECSCHHHHHHHHHHHHHT--TCCCEEECTTSCHHHHHHHHHHHHTTSCC--EE
T ss_pred ---hHHHHHHHHHHHHhc--cCCCEEEEeCCHHHHHHHHHHHHhc--CCcEEEeCCCCCHHHHHHHHHHHHCCCCC--EE
Confidence 012223333333221 4679999999999999999999876 78899999999999999999999876655 89
Q ss_pred eecccccccccccCCCEEEEEcCCC------CHhHHHHHHHhhhccCCCCcEEEEEEeeCCCHHHHHHHHHHH
Q 042857 1146 LSTRSCGLGINLATADTVIIYDSDF------NPHADIQAMNRAHRIGQSKRLLVYRLVVRASVEERILQLAKK 1212 (1404)
Q Consensus 1146 LSTrAgG~GINL~~AdtVIi~DsdW------NP~~d~QAigRahRiGQ~k~V~VYrLvt~~TvEE~Ilq~a~~ 1212 (1404)
++|.++++|||++.+++||+||++| ++..++|++||++|.|+...+. .|+... -+..+++..++
T Consensus 298 v~T~~~~~Gidip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~--~~~~~~-~~~~~~~~i~~ 367 (395)
T 3pey_A 298 ITTNVLARGIDIPTVSMVVNYDLPTLANGQADPATYIHRIGRTGRFGRKGVAI--SFVHDK-NSFNILSAIQK 367 (395)
T ss_dssp EECGGGSSSCCCTTEEEEEESSCCBCTTSSBCHHHHHHHHTTSSCTTCCEEEE--EEECSH-HHHHHHHHHHH
T ss_pred EECChhhcCCCcccCCEEEEcCCCCCCcCCCCHHHhhHhccccccCCCCceEE--EEEech-HHHHHHHHHHH
Confidence 9999999999999999999999999 9999999999999999865544 344432 23344444333
No 24
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=99.95 E-value=1e-27 Score=283.71 Aligned_cols=318 Identities=19% Similarity=0.202 Sum_probs=211.8
Q ss_pred CCCHHHHHHHHHHHHhhccCCcEEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEeCCC-ChHHHHHHHHHHC--CCC
Q 042857 755 ALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLS-TMPNWLAEFALWA--PNL 831 (1404)
Q Consensus 755 ~L~pyQlegVnwL~~~~~~~~~~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP~S-ll~nW~rEf~kw~--P~l 831 (1404)
.|+|||.+++..++. +.++|+..+||+|||++++..+...+.......++|||+|.. +..||.+++..++ ..+
T Consensus 62 ~~~~~Q~~~i~~~~~----~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~ 137 (414)
T 3eiq_A 62 KPSAIQQRAILPCIK----GYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMGA 137 (414)
T ss_dssp SCCHHHHHHHHHHHT----TCCEEECCCSCSSSHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHGGGSCC
T ss_pred CCCHHHHHHhHHHhC----CCCEEEECCCCCcccHHHHHHHHHHHhhcCCceeEEEEeChHHHHHHHHHHHHHHhcccCc
Confidence 699999999988765 788999999999999998877776654444556799999996 5589999999986 356
Q ss_pred cEEEEecchhHHHHHHHhhhccCCCCccccccCCCCceEEEeeHHHHHhhh--ccccCCCceEEEEccccccCCCc--cH
Q 042857 832 NVVEYHGCAKARAIIRQYEWHASDPDNLNKKTSSYKFNVLLTTYEMILADS--SHLRGVPWEVLVVDEGHRLKNSG--SK 907 (1404)
Q Consensus 832 ~Vvvy~G~~~~R~~ir~~E~~~~~~~~~~~~~~~~kfdVvITTYe~l~~d~--~~L~~i~w~lVIVDEAHrlKN~~--Sk 907 (1404)
.+..+.|....+....... ....+|+|+|++.+.... ..+....+++|||||||++.+.+ ..
T Consensus 138 ~~~~~~~~~~~~~~~~~~~--------------~~~~~iiv~T~~~l~~~l~~~~~~~~~~~~vViDEah~~~~~~~~~~ 203 (414)
T 3eiq_A 138 SCHACIGGTNVRAEVQKLQ--------------MEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQ 203 (414)
T ss_dssp CEEECCCCTTHHHHHHHHT--------------TTCCSEEEECHHHHHHHHHHTSSCSTTCCEEEECSHHHHHHTTTHHH
T ss_pred eEEEEECCcchHHHHHHHh--------------cCCCCEEEECHHHHHHHHHcCCcccccCcEEEEECHHHhhccCcHHH
Confidence 7777777766554443321 135689999999987643 23444568899999999985433 44
Q ss_pred HHHHHhhcc-cccEEEEeccCCCCChHHHHHHhhhhCCCCCCChhHHHHHhccccchHHHHHHHHhhhhhhhhhhHhhhh
Q 042857 908 LFSLLNSFS-FQHRVLLTGTPLQNNIGEMYNLLNFLQPASFPSLSSFEEKFNDLTTTQKVEELKKLVAPHMLRRLKKDAM 986 (1404)
Q Consensus 908 ~~~~L~~l~-~~~rLLLTGTPlqNnl~EL~sLL~fL~P~~f~s~~~F~~~f~d~~~~~~i~~L~~lL~p~mLRR~K~dV~ 986 (1404)
+...+..+. ....++|||||-. ++..++..+... |..+.... ..
T Consensus 204 ~~~~~~~~~~~~~~i~~SAT~~~----~~~~~~~~~~~~-----------------------------~~~~~~~~--~~ 248 (414)
T 3eiq_A 204 IYDIFQKLNSNTQVVLLSATMPS----DVLEVTKKFMRD-----------------------------PIRILVKK--EE 248 (414)
T ss_dssp HHHHHTTSCTTCEEEEECSCCCH----HHHHHHTTTCSS-----------------------------CEEECCCC--CC
T ss_pred HHHHHHhCCCCCeEEEEEEecCH----HHHHHHHHHcCC-----------------------------CEEEEecC--Cc
Confidence 556666664 4456889999821 122111111000 00000000 00
Q ss_pred hcCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCcHHHHHHHH
Q 042857 987 QNIPPKTERMVPVELSSIQAEYYRAMLTKNYQILRNIGKGVAQQSMLNIVMQLRKVCNHPYLIPGTEPDSGSVEFLHEMR 1066 (1404)
Q Consensus 987 ~~LPpk~e~iV~V~LS~~Qk~~Y~~il~~n~~~L~~~~kg~~~~sllnilm~LRK~cnHP~L~~~~e~~~~~~e~l~~~~ 1066 (1404)
...+......+.+..
T Consensus 249 ~~~~~~~~~~~~~~~----------------------------------------------------------------- 263 (414)
T 3eiq_A 249 LTLEGIRQFYINVER----------------------------------------------------------------- 263 (414)
T ss_dssp CCTTSCCEEEEECSS-----------------------------------------------------------------
T ss_pred cCCCCceEEEEEeCh-----------------------------------------------------------------
Confidence 000111111111110
Q ss_pred HhhhhHHHHHHHHHHHHHHcCCeEEEEecchhHHHHHHHHHhhhcCCceEEEEeCCCCHHHHHHHHHHHhcCCCceEEEe
Q 042857 1067 IKASAKLTLLHSMLKVLYKEGHRVLIFSQMTKLLDILEDYLNIEFGPKTYERVDGSVSVGDRQAAITRFNQDKSRFVFLL 1146 (1404)
Q Consensus 1067 i~~SgKl~~L~kLL~kl~~~G~KVLIFSq~~~~LDiLed~L~~~f~g~~y~rLdGs~s~~eRq~~Id~Fn~~~s~~VfLL 1146 (1404)
...|+..|..++... .+.++|||++....++.+..+|... ++.+..+||.++..+|+.+++.|+++... +|+
T Consensus 264 --~~~~~~~l~~~~~~~--~~~~~lvf~~~~~~~~~l~~~l~~~--~~~~~~~h~~~~~~~r~~~~~~f~~g~~~--vlv 335 (414)
T 3eiq_A 264 --EEWKLDTLCDLYETL--TITQAVIFINTRRKVDWLTEKMHAR--DFTVSAMHGDMDQKERDVIMREFRSGSSR--VLI 335 (414)
T ss_dssp --STTHHHHHHHHHHSS--CCSSCEEECSCHHHHHHHHHHHHTT--TCCCEEC---CHHHHHHHHHHHHSCC-----CEE
T ss_pred --HHhHHHHHHHHHHhC--CCCcEEEEeCCHHHHHHHHHHHHhc--CCeEEEecCCCCHHHHHHHHHHHHcCCCc--EEE
Confidence 012444444444432 4578999999999999999999876 78899999999999999999999876544 799
Q ss_pred ecccccccccccCCCEEEEEcCCCCHhHHHHHHHhhhccCCCCcEEEEEEeeCC
Q 042857 1147 STRSCGLGINLATADTVIIYDSDFNPHADIQAMNRAHRIGQSKRLLVYRLVVRA 1200 (1404)
Q Consensus 1147 STrAgG~GINL~~AdtVIi~DsdWNP~~d~QAigRahRiGQ~k~V~VYrLvt~~ 1200 (1404)
+|.++++|||++.+++||+||++||+..+.|++||++|.|+... +|.|++..
T Consensus 336 ~T~~~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~--~~~~~~~~ 387 (414)
T 3eiq_A 336 TTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGV--AINMVTEE 387 (414)
T ss_dssp ECSSCC--CCGGGCSCEEESSCCSSTHHHHHHSCCC-------C--EEEEECST
T ss_pred ECCccccCCCccCCCEEEEeCCCCCHHHhhhhcCcccCCCCCce--EEEEEcHH
Confidence 99999999999999999999999999999999999999998654 45667765
No 25
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=99.95 E-value=1.8e-26 Score=277.95 Aligned_cols=314 Identities=16% Similarity=0.182 Sum_probs=219.0
Q ss_pred CCCHHHHHHHHHHHHhhccCCcEEEEcCCCchHHHHHHHHHHHHHhhcc-----CCCcEEEEeCCC-ChHHHHHHHHHHC
Q 042857 755 ALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFK-----AKLPCLVLVPLS-TMPNWLAEFALWA 828 (1404)
Q Consensus 755 ~L~pyQlegVnwL~~~~~~~~~~ILADEMGLGKTiqaIa~L~~L~~~~~-----~~gP~LIVvP~S-ll~nW~rEf~kw~ 828 (1404)
.++|+|.+++..++. ++++|+..++|+|||++++..+...+.... ....+|||+|.. +..||.+++.+++
T Consensus 78 ~pt~iQ~~ai~~i~~----g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~ 153 (434)
T 2db3_A 78 IPTPIQKCSIPVISS----GRDLMACAQTGSGKTAAFLLPILSKLLEDPHELELGRPQVVIVSPTRELAIQIFNEARKFA 153 (434)
T ss_dssp SCCHHHHHHHHHHHT----TCCEEEECCTTSSHHHHHHHHHHHHHHHSCCCCCTTCCSEEEECSSHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHhc----CCCEEEECCCCCCchHHHHHHHHHHHHhcccccccCCccEEEEecCHHHHHHHHHHHHHHh
Confidence 589999999998764 799999999999999988766654443322 234799999996 5589999999997
Q ss_pred C--CCcEEEEecchhHHHHHHHhhhccCCCCccccccCCCCceEEEeeHHHHHhhhc--cccCCCceEEEEccccccCCC
Q 042857 829 P--NLNVVEYHGCAKARAIIRQYEWHASDPDNLNKKTSSYKFNVLLTTYEMILADSS--HLRGVPWEVLVVDEGHRLKNS 904 (1404)
Q Consensus 829 P--~l~Vvvy~G~~~~R~~ir~~E~~~~~~~~~~~~~~~~kfdVvITTYe~l~~d~~--~L~~i~w~lVIVDEAHrlKN~ 904 (1404)
. .+++.+++|+........... ...+|+|+|++.+..... .+...++.+|||||||++...
T Consensus 154 ~~~~~~~~~~~gg~~~~~~~~~l~---------------~~~~Ivv~Tp~~l~~~l~~~~~~l~~~~~lVlDEah~~~~~ 218 (434)
T 2db3_A 154 FESYLKIGIVYGGTSFRHQNECIT---------------RGCHVVIATPGRLLDFVDRTFITFEDTRFVVLDEADRMLDM 218 (434)
T ss_dssp TTSSCCCCEECTTSCHHHHHHHHT---------------TCCSEEEECHHHHHHHHHTTSCCCTTCCEEEEETHHHHTST
T ss_pred ccCCcEEEEEECCCCHHHHHHHhh---------------cCCCEEEEChHHHHHHHHhCCcccccCCeEEEccHhhhhcc
Confidence 4 467777888765544333221 257899999999976432 333456789999999998764
Q ss_pred c--cHHHHHHhhc---ccccEEEEeccCCCCChHHHHHHhhhhCCCCCCChhHHHHHhccccchHHHHHHHHhhhhhhhh
Q 042857 905 G--SKLFSLLNSF---SFQHRVLLTGTPLQNNIGEMYNLLNFLQPASFPSLSSFEEKFNDLTTTQKVEELKKLVAPHMLR 979 (1404)
Q Consensus 905 ~--Sk~~~~L~~l---~~~~rLLLTGTPlqNnl~EL~sLL~fL~P~~f~s~~~F~~~f~d~~~~~~i~~L~~lL~p~mLR 979 (1404)
+ ......+..+ .....+++|||+- .++..+......+ +..+.
T Consensus 219 gf~~~~~~i~~~~~~~~~~q~l~~SAT~~----~~~~~~~~~~l~~-----------------------------~~~i~ 265 (434)
T 2db3_A 219 GFSEDMRRIMTHVTMRPEHQTLMFSATFP----EEIQRMAGEFLKN-----------------------------YVFVA 265 (434)
T ss_dssp TTHHHHHHHHHCTTSCSSCEEEEEESCCC----HHHHHHHHTTCSS-----------------------------CEEEE
T ss_pred CcHHHHHHHHHhcCCCCCceEEEEeccCC----HHHHHHHHHhccC-----------------------------CEEEE
Confidence 3 3344555443 2445789999972 1222111110000 00000
Q ss_pred hhHhhhhhcCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCcH
Q 042857 980 RLKKDAMQNIPPKTERMVPVELSSIQAEYYRAMLTKNYQILRNIGKGVAQQSMLNIVMQLRKVCNHPYLIPGTEPDSGSV 1059 (1404)
Q Consensus 980 R~K~dV~~~LPpk~e~iV~V~LS~~Qk~~Y~~il~~n~~~L~~~~kg~~~~sllnilm~LRK~cnHP~L~~~~e~~~~~~ 1059 (1404)
. .......+......+.+.
T Consensus 266 -~-~~~~~~~~~i~~~~~~~~----------------------------------------------------------- 284 (434)
T 2db3_A 266 -I-GIVGGACSDVKQTIYEVN----------------------------------------------------------- 284 (434)
T ss_dssp -E-SSTTCCCTTEEEEEEECC-----------------------------------------------------------
T ss_pred -e-ccccccccccceEEEEeC-----------------------------------------------------------
Confidence 0 000000011111111111
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHcCCeEEEEecchhHHHHHHHHHhhhcCCceEEEEeCCCCHHHHHHHHHHHhcCC
Q 042857 1060 EFLHEMRIKASAKLTLLHSMLKVLYKEGHRVLIFSQMTKLLDILEDYLNIEFGPKTYERVDGSVSVGDRQAAITRFNQDK 1139 (1404)
Q Consensus 1060 e~l~~~~i~~SgKl~~L~kLL~kl~~~G~KVLIFSq~~~~LDiLed~L~~~f~g~~y~rLdGs~s~~eRq~~Id~Fn~~~ 1139 (1404)
...|...|.++|.. .+.++|||++....++.|..+|... ++.+..+||++++.+|+.+++.|+++.
T Consensus 285 ---------~~~k~~~l~~~l~~---~~~~~lVF~~t~~~a~~l~~~L~~~--~~~~~~lhg~~~~~~R~~~l~~F~~g~ 350 (434)
T 2db3_A 285 ---------KYAKRSKLIEILSE---QADGTIVFVETKRGADFLASFLSEK--EFPTTSIHGDRLQSQREQALRDFKNGS 350 (434)
T ss_dssp ---------GGGHHHHHHHHHHH---CCTTEEEECSSHHHHHHHHHHHHHT--TCCEEEESTTSCHHHHHHHHHHHHTSS
T ss_pred ---------cHHHHHHHHHHHHh---CCCCEEEEEeCcHHHHHHHHHHHhC--CCCEEEEeCCCCHHHHHHHHHHHHcCC
Confidence 12334444444433 4556999999999999999999976 788999999999999999999998766
Q ss_pred CceEEEeecccccccccccCCCEEEEEcCCCCHhHHHHHHHhhhccCCCCcEEEEEEeeC
Q 042857 1140 SRFVFLLSTRSCGLGINLATADTVIIYDSDFNPHADIQAMNRAHRIGQSKRLLVYRLVVR 1199 (1404)
Q Consensus 1140 s~~VfLLSTrAgG~GINL~~AdtVIi~DsdWNP~~d~QAigRahRiGQ~k~V~VYrLvt~ 1199 (1404)
.. +|++|.++++|||++.+++||+||++|++..++|++||++|.|+...+ +.|++.
T Consensus 351 ~~--vLvaT~v~~rGlDi~~v~~VI~~d~p~~~~~y~qriGR~gR~g~~G~a--~~~~~~ 406 (434)
T 2db3_A 351 MK--VLIATSVASRGLDIKNIKHVINYDMPSKIDDYVHRIGRTGRVGNNGRA--TSFFDP 406 (434)
T ss_dssp CS--EEEECGGGTSSCCCTTCCEEEESSCCSSHHHHHHHHTTSSCTTCCEEE--EEEECT
T ss_pred Cc--EEEEchhhhCCCCcccCCEEEEECCCCCHHHHHHHhcccccCCCCCEE--EEEEec
Confidence 55 899999999999999999999999999999999999999999986655 445553
No 26
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=99.95 E-value=1.7e-26 Score=273.74 Aligned_cols=316 Identities=21% Similarity=0.254 Sum_probs=215.7
Q ss_pred CCCHHHHHHHHHHHHhhccCCcEEEEcCCCchHHHHHHHHHHHHHhhcc------------------CCCcEEEEeCCC-
Q 042857 755 ALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFK------------------AKLPCLVLVPLS- 815 (1404)
Q Consensus 755 ~L~pyQlegVnwL~~~~~~~~~~ILADEMGLGKTiqaIa~L~~L~~~~~------------------~~gP~LIVvP~S- 815 (1404)
.|+|+|.+++..+.. +.++|+..++|.|||+.++..+........ ....+|||+|..
T Consensus 37 ~~~~~Q~~~i~~i~~----~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~ 112 (417)
T 2i4i_A 37 RPTPVQKHAIPIIKE----KRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTRE 112 (417)
T ss_dssp SCCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHHHHHHHCCCHHHHHHHHCBTTBSCSBCCSEEEECSSHH
T ss_pred CCCHHHHHHHHHHcc----CCCEEEEcCCCCHHHHHHHHHHHHHHHhccccchhhccccccccccccCCccEEEECCcHH
Confidence 689999999987754 789999999999999987665544332221 113589999995
Q ss_pred ChHHHHHHHHHHC--CCCcEEEEecchhHHHHHHHhhhccCCCCccccccCCCCceEEEeeHHHHHhhhc--cccCCCce
Q 042857 816 TMPNWLAEFALWA--PNLNVVEYHGCAKARAIIRQYEWHASDPDNLNKKTSSYKFNVLLTTYEMILADSS--HLRGVPWE 891 (1404)
Q Consensus 816 ll~nW~rEf~kw~--P~l~Vvvy~G~~~~R~~ir~~E~~~~~~~~~~~~~~~~kfdVvITTYe~l~~d~~--~L~~i~w~ 891 (1404)
+..||.+++..|+ .++++..++|+.......+... ...+|+|+|++.+..... .+....++
T Consensus 113 L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~---------------~~~~I~v~Tp~~l~~~l~~~~~~~~~~~ 177 (417)
T 2i4i_A 113 LAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLE---------------RGCHLLVATPGRLVDMMERGKIGLDFCK 177 (417)
T ss_dssp HHHHHHHHHHHHHTTSSCCEEEECSSSCHHHHHHHHT---------------TCCSEEEECHHHHHHHHHTTSBCCTTCC
T ss_pred HHHHHHHHHHHHhCcCCceEEEEECCCCHHHHHHHhh---------------CCCCEEEEChHHHHHHHHcCCcChhhCc
Confidence 5589999999886 3578888888766554443321 246899999999976432 23345678
Q ss_pred EEEEccccccCCCc--cHHHHHHhhcc-----cccEEEEeccCCCCChHHHHHHhhhhCCCCCCChhHHHHHhccccchH
Q 042857 892 VLVVDEGHRLKNSG--SKLFSLLNSFS-----FQHRVLLTGTPLQNNIGEMYNLLNFLQPASFPSLSSFEEKFNDLTTTQ 964 (1404)
Q Consensus 892 lVIVDEAHrlKN~~--Sk~~~~L~~l~-----~~~rLLLTGTPlqNnl~EL~sLL~fL~P~~f~s~~~F~~~f~d~~~~~ 964 (1404)
+|||||||++...+ ..+...+.... ....++|||||-. ++..++..+...
T Consensus 178 ~iViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~SAT~~~----~~~~~~~~~~~~------------------- 234 (417)
T 2i4i_A 178 YLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPK----EIQMLARDFLDE------------------- 234 (417)
T ss_dssp EEEESSHHHHHHTTCHHHHHHHHTSSSCCCBTTBEEEEEESCCCH----HHHHHHHHHCSS-------------------
T ss_pred EEEEEChhHhhccCcHHHHHHHHHhccCCCcCCcEEEEEEEeCCH----HHHHHHHHHcCC-------------------
Confidence 99999999986433 23333333222 2356899999821 111111100000
Q ss_pred HHHHHHHhhhhhhhhhhHhhhhhcCCCc-eEEEEEecCCHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHh
Q 042857 965 KVEELKKLVAPHMLRRLKKDAMQNIPPK-TERMVPVELSSIQAEYYRAMLTKNYQILRNIGKGVAQQSMLNIVMQLRKVC 1043 (1404)
Q Consensus 965 ~i~~L~~lL~p~mLRR~K~dV~~~LPpk-~e~iV~V~LS~~Qk~~Y~~il~~n~~~L~~~~kg~~~~sllnilm~LRK~c 1043 (1404)
+..+. ... ....++. ....+.+.
T Consensus 235 ----------~~~~~-~~~--~~~~~~~i~~~~~~~~------------------------------------------- 258 (417)
T 2i4i_A 235 ----------YIFLA-VGR--VGSTSENITQKVVWVE------------------------------------------- 258 (417)
T ss_dssp ----------CEEEE-EC------CCSSEEEEEEECC-------------------------------------------
T ss_pred ----------CEEEE-eCC--CCCCccCceEEEEEec-------------------------------------------
Confidence 00000 000 0001111 11111111
Q ss_pred CCCCCCCCCCCCCCcHHHHHHHHHhhhhHHHHHHHHHHHHHHcCCeEEEEecchhHHHHHHHHHhhhcCCceEEEEeCCC
Q 042857 1044 NHPYLIPGTEPDSGSVEFLHEMRIKASAKLTLLHSMLKVLYKEGHRVLIFSQMTKLLDILEDYLNIEFGPKTYERVDGSV 1123 (1404)
Q Consensus 1044 nHP~L~~~~e~~~~~~e~l~~~~i~~SgKl~~L~kLL~kl~~~G~KVLIFSq~~~~LDiLed~L~~~f~g~~y~rLdGs~ 1123 (1404)
...|...|.+++... ..+.++|||++....++.+..+|... ++.+..+||.+
T Consensus 259 -------------------------~~~~~~~l~~~l~~~-~~~~~~lVf~~~~~~~~~l~~~L~~~--~~~~~~~h~~~ 310 (417)
T 2i4i_A 259 -------------------------ESDKRSFLLDLLNAT-GKDSLTLVFVETKKGADSLEDFLYHE--GYACTSIHGDR 310 (417)
T ss_dssp -------------------------GGGHHHHHHHHHHTC-CTTCEEEEECSSHHHHHHHHHHHHHT--TCCEEEECTTS
T ss_pred -------------------------cHhHHHHHHHHHHhc-CCCCeEEEEECCHHHHHHHHHHHHHC--CCCeeEecCCC
Confidence 122344444444432 35779999999999999999999876 78899999999
Q ss_pred CHHHHHHHHHHHhcCCCceEEEeecccccccccccCCCEEEEEcCCCCHhHHHHHHHhhhccCCCCcEEEEEEeeCC
Q 042857 1124 SVGDRQAAITRFNQDKSRFVFLLSTRSCGLGINLATADTVIIYDSDFNPHADIQAMNRAHRIGQSKRLLVYRLVVRA 1200 (1404)
Q Consensus 1124 s~~eRq~~Id~Fn~~~s~~VfLLSTrAgG~GINL~~AdtVIi~DsdWNP~~d~QAigRahRiGQ~k~V~VYrLvt~~ 1200 (1404)
+..+|.++++.|+++... +|++|.++++|||++.+++||+||++|++..++|++||++|.|+... +|.|++..
T Consensus 311 ~~~~r~~~~~~f~~g~~~--vlvaT~~~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~--~~~~~~~~ 383 (417)
T 2i4i_A 311 SQRDREEALHQFRSGKSP--ILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGL--ATSFFNER 383 (417)
T ss_dssp CHHHHHHHHHHHHHTSSC--EEEECHHHHTTSCCCCEEEEEESSCCSSHHHHHHHHTTBCC--CCEE--EEEEECGG
T ss_pred CHHHHHHHHHHHHcCCCC--EEEECChhhcCCCcccCCEEEEEcCCCCHHHHHHhcCccccCCCCce--EEEEEccc
Confidence 999999999999876655 89999999999999999999999999999999999999999998644 45556554
No 27
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=99.94 E-value=1.7e-25 Score=264.14 Aligned_cols=329 Identities=18% Similarity=0.220 Sum_probs=221.5
Q ss_pred CCCHHHHHHHHHHHHhhccCCcEEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEeCCCCh-HHHHHHHHHHC---CC
Q 042857 755 ALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLSTM-PNWLAEFALWA---PN 830 (1404)
Q Consensus 755 ~L~pyQlegVnwL~~~~~~~~~~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP~Sll-~nW~rEf~kw~---P~ 830 (1404)
.|+|+|.+++..++.. .+.++|+..++|.|||++++..+...+........+|||+|...+ .||.+.+..+. ++
T Consensus 47 ~~~~~Q~~~i~~~~~~--~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~ 124 (412)
T 3fht_A 47 RPSKIQENALPLMLAE--PPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYPE 124 (412)
T ss_dssp SCCHHHHHHHHHHHSS--SCCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTT
T ss_pred CCCHHHHHHHHHHhcC--CCCeEEEECCCCchHHHHHHHHHHHHhhhcCCCCCEEEECCCHHHHHHHHHHHHHHHhhccc
Confidence 6999999999887651 358999999999999999877766655444455579999999755 78888888775 56
Q ss_pred CcEEEEecchhHHHHHHHhhhccCCCCccccccCCCCceEEEeeHHHHHhhhc---cccCCCceEEEEccccccCC---C
Q 042857 831 LNVVEYHGCAKARAIIRQYEWHASDPDNLNKKTSSYKFNVLLTTYEMILADSS---HLRGVPWEVLVVDEGHRLKN---S 904 (1404)
Q Consensus 831 l~Vvvy~G~~~~R~~ir~~E~~~~~~~~~~~~~~~~kfdVvITTYe~l~~d~~---~L~~i~w~lVIVDEAHrlKN---~ 904 (1404)
+.+....|..... .......+|+|+|++.+..... .+....+++|||||||++.. .
T Consensus 125 ~~~~~~~~~~~~~------------------~~~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~~iViDEah~~~~~~~~ 186 (412)
T 3fht_A 125 LKLAYAVRGNKLE------------------RGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGH 186 (412)
T ss_dssp CCEEEECTTCCCC------------------TTCCCCCSEEEECHHHHHHHHTTSCSSCGGGCCEEEEETHHHHHSTTTT
T ss_pred ceEEEeecCcchh------------------hhhcCCCCEEEECchHHHHHHHhcCCcChhhCcEEEEeCHHHHhhcCCc
Confidence 7777776643210 1112356899999999976542 23334689999999999854 1
Q ss_pred ccHHHHHHhhccc-ccEEEEeccCCCCChHHHHHHhhhhCCCCCCChhHHHHHhccccchHHHHHHHHhhhhhhhhhhHh
Q 042857 905 GSKLFSLLNSFSF-QHRVLLTGTPLQNNIGEMYNLLNFLQPASFPSLSSFEEKFNDLTTTQKVEELKKLVAPHMLRRLKK 983 (1404)
Q Consensus 905 ~Sk~~~~L~~l~~-~~rLLLTGTPlqNnl~EL~sLL~fL~P~~f~s~~~F~~~f~d~~~~~~i~~L~~lL~p~mLRR~K~ 983 (1404)
.......+..+.. ...++|||||-. +++.++....+.. ..+.- ..
T Consensus 187 ~~~~~~~~~~~~~~~~~i~~SAT~~~----~~~~~~~~~~~~~-----------------------------~~~~~-~~ 232 (412)
T 3fht_A 187 QDQSIRIQRMLPRNCQMLLFSATFED----SVWKFAQKVVPDP-----------------------------NVIKL-KR 232 (412)
T ss_dssp HHHHHHHHHTSCTTCEEEEEESCCCH----HHHHHHHHHSSSC-----------------------------EEECC-CG
T ss_pred HHHHHHHHhhCCCCceEEEEEeecCH----HHHHHHHHhcCCC-----------------------------eEEee-cc
Confidence 2233333444443 356889999832 2222211111100 00000 00
Q ss_pred hhhhcCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCcHHHHH
Q 042857 984 DAMQNIPPKTERMVPVELSSIQAEYYRAMLTKNYQILRNIGKGVAQQSMLNIVMQLRKVCNHPYLIPGTEPDSGSVEFLH 1063 (1404)
Q Consensus 984 dV~~~LPpk~e~iV~V~LS~~Qk~~Y~~il~~n~~~L~~~~kg~~~~sllnilm~LRK~cnHP~L~~~~e~~~~~~e~l~ 1063 (1404)
.....+......+.+..
T Consensus 233 -~~~~~~~~~~~~~~~~~-------------------------------------------------------------- 249 (412)
T 3fht_A 233 -EEETLDTIKQYYVLCSS-------------------------------------------------------------- 249 (412)
T ss_dssp -GGSSCTTEEEEEEECSS--------------------------------------------------------------
T ss_pred -ccccccCceEEEEEcCC--------------------------------------------------------------
Confidence 00011111111111111
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHcCCeEEEEecchhHHHHHHHHHhhhcCCceEEEEeCCCCHHHHHHHHHHHhcCCCceE
Q 042857 1064 EMRIKASAKLTLLHSMLKVLYKEGHRVLIFSQMTKLLDILEDYLNIEFGPKTYERVDGSVSVGDRQAAITRFNQDKSRFV 1143 (1404)
Q Consensus 1064 ~~~i~~SgKl~~L~kLL~kl~~~G~KVLIFSq~~~~LDiLed~L~~~f~g~~y~rLdGs~s~~eRq~~Id~Fn~~~s~~V 1143 (1404)
...|+..|..++.. ..+.++|||++....++.|..+|... ++.+..++|.++..+|+.+++.|+++...
T Consensus 250 -----~~~~~~~l~~~~~~--~~~~~~lvf~~~~~~~~~l~~~L~~~--~~~~~~~~~~~~~~~r~~~~~~f~~g~~~-- 318 (412)
T 3fht_A 250 -----RDEKFQALCNLYGA--ITIAQAMIFCHTRKTASWLAAELSKE--GHQVALLSGEMMVEQRAAVIERFREGKEK-- 318 (412)
T ss_dssp -----HHHHHHHHHHHHHH--HSSSEEEEECSSHHHHHHHHHHHHHT--TCCCEEECTTSCHHHHHHHHHHHHTTSCS--
T ss_pred -----hHHHHHHHHHHHhh--cCCCCEEEEeCCHHHHHHHHHHHHhC--CCeEEEecCCCCHHHHHHHHHHHHCCCCc--
Confidence 11233444444443 25679999999999999999999876 78889999999999999999999976655
Q ss_pred EEeecccccccccccCCCEEEEEcCCCCH------hHHHHHHHhhhccCCCCcEEEEEEeeCCCHHHHHHHHHHHHH
Q 042857 1144 FLLSTRSCGLGINLATADTVIIYDSDFNP------HADIQAMNRAHRIGQSKRLLVYRLVVRASVEERILQLAKKKL 1214 (1404)
Q Consensus 1144 fLLSTrAgG~GINL~~AdtVIi~DsdWNP------~~d~QAigRahRiGQ~k~V~VYrLvt~~TvEE~Ilq~a~~Kl 1214 (1404)
+|++|.++++|||++.+++||+||++|++ ..++|++||++|.|+...+ |.|+.. .-+..++...++++
T Consensus 319 vlv~T~~~~~Gidip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~--~~~~~~-~~~~~~~~~i~~~~ 392 (412)
T 3fht_A 319 VLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLA--VNMVDS-KHSMNILNRIQEHF 392 (412)
T ss_dssp EEEECGGGTSSCCCTTEEEEEESSCCBCSSSSBCHHHHHHHHTTSSCTTCCEEE--EEEECS-HHHHHHHHHHHHHH
T ss_pred EEEEcCccccCCCccCCCEEEEECCCCCCCCCcchheeecccCcccCCCCCceE--EEEEcC-hhhHHHHHHHHHHH
Confidence 89999999999999999999999999876 7999999999999976544 445543 23455555555443
No 28
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=99.94 E-value=5.9e-25 Score=261.93 Aligned_cols=315 Identities=15% Similarity=0.172 Sum_probs=217.1
Q ss_pred CCCCHHHHHHHHHHHHhhccCCcEEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEeCCC-ChHHHHHHHHHHCC-CC
Q 042857 754 GALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLS-TMPNWLAEFALWAP-NL 831 (1404)
Q Consensus 754 ~~L~pyQlegVnwL~~~~~~~~~~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP~S-ll~nW~rEf~kw~P-~l 831 (1404)
.+|+|||.+++..++. +.++|+..++|.|||+.++..+..+. ...+.+|||+|.. +..||.++|..|++ ++
T Consensus 20 ~~~~~~Q~~~i~~i~~----~~~~lv~apTGsGKT~~~l~~~~~~~---~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~ 92 (414)
T 3oiy_A 20 KDLTGYQRLWAKRIVQ----GKSFTMVAPTGVGKTTFGMMTALWLA---RKGKKSALVFPTVTLVKQTLERLQKLADEKV 92 (414)
T ss_dssp SCCCHHHHHHHHHHTT----TCCEECCSCSSSSHHHHHHHHHHHHH---TTTCCEEEEESSHHHHHHHHHHHHHHCCSSC
T ss_pred CCCCHHHHHHHHHHhc----CCCEEEEeCCCCCHHHHHHHHHHHHh---cCCCEEEEEECCHHHHHHHHHHHHHHccCCc
Confidence 3689999999988754 78999999999999996665555443 3345799999995 55899999999986 78
Q ss_pred cEEEEecchhHHH---HHHHhhhccCCCCccccccCCCCceEEEeeHHHHHhhhccccCCCceEEEEccccccC------
Q 042857 832 NVVEYHGCAKARA---IIRQYEWHASDPDNLNKKTSSYKFNVLLTTYEMILADSSHLRGVPWEVLVVDEGHRLK------ 902 (1404)
Q Consensus 832 ~Vvvy~G~~~~R~---~ir~~E~~~~~~~~~~~~~~~~kfdVvITTYe~l~~d~~~L~~i~w~lVIVDEAHrlK------ 902 (1404)
++..++|+..... .+.... ....+|+|+|++.+......+....+++|||||||++.
T Consensus 93 ~v~~~~g~~~~~~~~~~~~~l~--------------~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~iViDEaH~~~~~~~~~ 158 (414)
T 3oiy_A 93 KIFGFYSSMKKEEKEKFEKSFE--------------EDDYHILVFSTQFVSKNREKLSQKRFDFVFVDDVDAVLKASRNI 158 (414)
T ss_dssp CEEECCTTSCHHHHHHHHHHHH--------------HTCCSEEEEEHHHHHHCHHHHTTCCCSEEEESCHHHHHHCHHHH
T ss_pred eEEEEECCCChhhHHHHHHHhh--------------cCCCCEEEECHHHHHHHHHHhccccccEEEEeChHhhhhccchh
Confidence 9999999866522 222211 12478999999999876666666789999999999863
Q ss_pred -------CCccH-HHHHHhhc------------ccccEEEEeccCCCCChHHHHHHhhhhCCCCCCChhHHHHHhccccc
Q 042857 903 -------NSGSK-LFSLLNSF------------SFQHRVLLTGTPLQNNIGEMYNLLNFLQPASFPSLSSFEEKFNDLTT 962 (1404)
Q Consensus 903 -------N~~Sk-~~~~L~~l------------~~~~rLLLTGTPlqNnl~EL~sLL~fL~P~~f~s~~~F~~~f~d~~~ 962 (1404)
+.... +...+..+ .....+++||||....+...+.- .++.... .
T Consensus 159 d~~l~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~SAT~~~~~~~~~~~~-~~~~~~~--------------~- 222 (414)
T 3oiy_A 159 DTLLMMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFR-DLLNFTV--------------G- 222 (414)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHTCCCCCCTTCCCCEEEESSCCSSCCSSTTHHHH-HHHSCCS--------------S-
T ss_pred hhHHhhcCCcHHHHHHHHHhcccchhhhhcccCCCceEEEEecCCCcchhHHHHHH-HhhccCc--------------C-
Confidence 22222 33444443 34466889999766554321100 0000000 0
Q ss_pred hHHHHHHHHhhhhhhhhhhHhhhhhcCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHH
Q 042857 963 TQKVEELKKLVAPHMLRRLKKDAMQNIPPKTERMVPVELSSIQAEYYRAMLTKNYQILRNIGKGVAQQSMLNIVMQLRKV 1042 (1404)
Q Consensus 963 ~~~i~~L~~lL~p~mLRR~K~dV~~~LPpk~e~iV~V~LS~~Qk~~Y~~il~~n~~~L~~~~kg~~~~sllnilm~LRK~ 1042 (1404)
.....++.....+ +..
T Consensus 223 ----------------------~~~~~~~~i~~~~-~~~----------------------------------------- 238 (414)
T 3oiy_A 223 ----------------------RLVSVARNITHVR-ISS----------------------------------------- 238 (414)
T ss_dssp ----------------------CCCCCCCSEEEEE-ESS-----------------------------------------
T ss_pred ----------------------ccccccccchhee-ecc-----------------------------------------
Confidence 0000111111111 100
Q ss_pred hCCCCCCCCCCCCCCcHHHHHHHHHhhhhHHHHHHHHHHHHHHcCCeEEEEecchhHHHHHHHHHhhhcCCceEE-EEeC
Q 042857 1043 CNHPYLIPGTEPDSGSVEFLHEMRIKASAKLTLLHSMLKVLYKEGHRVLIFSQMTKLLDILEDYLNIEFGPKTYE-RVDG 1121 (1404)
Q Consensus 1043 cnHP~L~~~~e~~~~~~e~l~~~~i~~SgKl~~L~kLL~kl~~~G~KVLIFSq~~~~LDiLed~L~~~f~g~~y~-rLdG 1121 (1404)
.|...|..+|.. .+.++|||++.....+.|..+|... ++.+. .++|
T Consensus 239 ----------------------------~~~~~l~~~l~~---~~~~~lVF~~~~~~~~~l~~~L~~~--~~~~~~~~h~ 285 (414)
T 3oiy_A 239 ----------------------------RSKEKLVELLEI---FRDGILIFAQTEEEGKELYEYLKRF--KFNVGETWSE 285 (414)
T ss_dssp ----------------------------CCHHHHHHHHHH---HCSSEEEEESSHHHHHHHHHHHHHT--TCCEEESSSC
T ss_pred ----------------------------CHHHHHHHHHHH---cCCCEEEEECCHHHHHHHHHHHHHc--CCceehhhcC
Confidence 112223344443 4689999999999999999999976 77887 8888
Q ss_pred CCCHHHHHHHHHHHhcCCCceEEEee----cccccccccccC-CCEEEEEcCC--CCHhHHHHHHHhhhccCCC--CcEE
Q 042857 1122 SVSVGDRQAAITRFNQDKSRFVFLLS----TRSCGLGINLAT-ADTVIIYDSD--FNPHADIQAMNRAHRIGQS--KRLL 1192 (1404)
Q Consensus 1122 s~s~~eRq~~Id~Fn~~~s~~VfLLS----TrAgG~GINL~~-AdtVIi~Dsd--WNP~~d~QAigRahRiGQ~--k~V~ 1192 (1404)
. +|+ ++.|+++... +|++ |.++++|||++. +++||+||++ +++..++|++||++|.|+. +.-.
T Consensus 286 ~----~r~--~~~f~~g~~~--vLvat~s~T~~~~~GiDip~~v~~VI~~~~p~~~~~~~y~qr~GR~gR~g~~~~~~g~ 357 (414)
T 3oiy_A 286 F----EKN--FEDFKVGKIN--ILIGVQAYYGKLTRGVDLPERIKYVIFWGTPSGPDVYTYIQASGRSSRILNGVLVKGV 357 (414)
T ss_dssp H----HHH--HHHHHTTSCS--EEEEECCTTCCCCCCCCCTTTCCEEEEESCCTTTCHHHHHHHHGGGCCEETTEECCEE
T ss_pred c----chH--HHHHhCCCCe--EEEEecCcCchhhccCccccccCEEEEECCCCCCCHHHHHHHhCccccCCCCCCcceE
Confidence 4 444 9999876655 6777 999999999999 9999999999 9999999999999999985 4566
Q ss_pred EEEEeeCCCHHHHHHHHHHHHH
Q 042857 1193 VYRLVVRASVEERILQLAKKKL 1214 (1404)
Q Consensus 1193 VYrLvt~~TvEE~Ilq~a~~Kl 1214 (1404)
+|.|+ -|..+++..++.+
T Consensus 358 ~i~~~----~~~~~~~~l~~~~ 375 (414)
T 3oiy_A 358 SVIFE----EDEEIFESLKTRL 375 (414)
T ss_dssp EEEEC----CCHHHHHHHHHHH
T ss_pred EEEEE----ccHHHHHHHHHHh
Confidence 66666 2445555544444
No 29
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=99.93 E-value=2.3e-25 Score=296.44 Aligned_cols=312 Identities=18% Similarity=0.227 Sum_probs=222.0
Q ss_pred CCCCCHHHHHHHHHHHHhhccCC--cEEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEeCCCCh-HHHHHHHHHHCC
Q 042857 753 GGALFPHQLEALNWLRKCWHKSK--NVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLSTM-PNWLAEFALWAP 829 (1404)
Q Consensus 753 g~~L~pyQlegVnwL~~~~~~~~--~~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP~Sll-~nW~rEf~kw~P 829 (1404)
+.+++|+|.+++..++..+..+. ++||+.+||+|||++++..+..+.. ....+||+||+..+ .||.++|..+++
T Consensus 601 ~~~~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~~~---~g~~vlvlvPt~~La~Q~~~~~~~~~~ 677 (1151)
T 2eyq_A 601 PFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVD---NHKQVAVLVPTTLLAQQHYDNFRDRFA 677 (1151)
T ss_dssp CSCCCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHT---TTCEEEEECSSHHHHHHHHHHHHHHST
T ss_pred CCCCCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHHHH---hCCeEEEEechHHHHHHHHHHHHHHhh
Confidence 34789999999999998777665 8999999999999998765554432 23479999999754 899999999986
Q ss_pred C--CcEEEEecchhHHHHHHHhhhccCCCCccccccCCCCceEEEeeHHHHHhhhccccCCCceEEEEccccccCCCccH
Q 042857 830 N--LNVVEYHGCAKARAIIRQYEWHASDPDNLNKKTSSYKFNVLLTTYEMILADSSHLRGVPWEVLVVDEGHRLKNSGSK 907 (1404)
Q Consensus 830 ~--l~Vvvy~G~~~~R~~ir~~E~~~~~~~~~~~~~~~~kfdVvITTYe~l~~d~~~L~~i~w~lVIVDEAHrlKN~~Sk 907 (1404)
+ +++..++|...........+ .......+|+|+|++.+..+. .-.+|++|||||+|++ +..
T Consensus 678 ~~~i~v~~l~~~~~~~~~~~~~~-----------~l~~g~~dIvV~T~~ll~~~~---~~~~l~lvIiDEaH~~---g~~ 740 (1151)
T 2eyq_A 678 NWPVRIEMISRFRSAKEQTQILA-----------EVAEGKIDILIGTHKLLQSDV---KFKDLGLLIVDEEHRF---GVR 740 (1151)
T ss_dssp TTTCCEEEESTTSCHHHHHHHHH-----------HHHTTCCSEEEECTHHHHSCC---CCSSEEEEEEESGGGS---CHH
T ss_pred cCCCeEEEEeCCCCHHHHHHHHH-----------HHhcCCCCEEEECHHHHhCCc---cccccceEEEechHhc---ChH
Confidence 5 56777776433322111111 011245789999999886543 3357899999999997 445
Q ss_pred HHHHHhhccc-ccEEEEeccCCCCChHHHHHHhhhhCCCCCCChhHHHHHhccccchHHHHHHHHhhhhhhhhhhHhhhh
Q 042857 908 LFSLLNSFSF-QHRVLLTGTPLQNNIGEMYNLLNFLQPASFPSLSSFEEKFNDLTTTQKVEELKKLVAPHMLRRLKKDAM 986 (1404)
Q Consensus 908 ~~~~L~~l~~-~~rLLLTGTPlqNnl~EL~sLL~fL~P~~f~s~~~F~~~f~d~~~~~~i~~L~~lL~p~mLRR~K~dV~ 986 (1404)
....+..+.. .+.|+|||||+.+.+...... +. ++ . +.
T Consensus 741 ~~~~l~~l~~~~~vl~lSATp~p~~l~~~~~~---~~---------------~~---------------~--------~i 779 (1151)
T 2eyq_A 741 HKERIKAMRANVDILTLTATPIPRTLNMAMSG---MR---------------DL---------------S--------II 779 (1151)
T ss_dssp HHHHHHHHHTTSEEEEEESSCCCHHHHHHHTT---TS---------------EE---------------E--------EC
T ss_pred HHHHHHHhcCCCCEEEEcCCCChhhHHHHHhc---CC---------------Cc---------------e--------EE
Confidence 5666766654 467899999976543221110 00 00 0 00
Q ss_pred hcCCCceE---EEEEecCCHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCcHHHHH
Q 042857 987 QNIPPKTE---RMVPVELSSIQAEYYRAMLTKNYQILRNIGKGVAQQSMLNIVMQLRKVCNHPYLIPGTEPDSGSVEFLH 1063 (1404)
Q Consensus 987 ~~LPpk~e---~iV~V~LS~~Qk~~Y~~il~~n~~~L~~~~kg~~~~sllnilm~LRK~cnHP~L~~~~e~~~~~~e~l~ 1063 (1404)
..|+... .........
T Consensus 780 -~~~~~~r~~i~~~~~~~~~------------------------------------------------------------ 798 (1151)
T 2eyq_A 780 -ATPPARRLAVKTFVREYDS------------------------------------------------------------ 798 (1151)
T ss_dssp -CCCCCBCBCEEEEEEECCH------------------------------------------------------------
T ss_pred -ecCCCCccccEEEEecCCH------------------------------------------------------------
Confidence 1111110 011111111
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHcCCeEEEEecchhHHHHHHHHHhhhcCCceEEEEeCCCCHHHHHHHHHHHhcCCCceE
Q 042857 1064 EMRIKASAKLTLLHSMLKVLYKEGHRVLIFSQMTKLLDILEDYLNIEFGPKTYERVDGSVSVGDRQAAITRFNQDKSRFV 1143 (1404)
Q Consensus 1064 ~~~i~~SgKl~~L~kLL~kl~~~G~KVLIFSq~~~~LDiLed~L~~~f~g~~y~rLdGs~s~~eRq~~Id~Fn~~~s~~V 1143 (1404)
..++..++.. ...|.+++||++....++.+.++|...++++.+..+||.++..+|++++++|+++...
T Consensus 799 ---------~~i~~~il~~-l~~g~qvlvf~~~v~~~~~l~~~L~~~~p~~~v~~lhg~~~~~eR~~il~~F~~g~~~-- 866 (1151)
T 2eyq_A 799 ---------MVVREAILRE-ILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFN-- 866 (1151)
T ss_dssp ---------HHHHHHHHHH-HTTTCEEEEECCCSSCHHHHHHHHHHHCTTSCEEECCSSCCHHHHHHHHHHHHTTSCC--
T ss_pred ---------HHHHHHHHHH-HhcCCeEEEEECCHHHHHHHHHHHHHhCCCCeEEEEeCCCCHHHHHHHHHHHHcCCCc--
Confidence 0011112222 2468899999999999999999999888889999999999999999999999876554
Q ss_pred EEeecccccccccccCCCEEEEEcC-CCCHhHHHHHHHhhhccCCCCcEEEEEEeeCC
Q 042857 1144 FLLSTRSCGLGINLATADTVIIYDS-DFNPHADIQAMNRAHRIGQSKRLLVYRLVVRA 1200 (1404)
Q Consensus 1144 fLLSTrAgG~GINL~~AdtVIi~Ds-dWNP~~d~QAigRahRiGQ~k~V~VYrLvt~~ 1200 (1404)
+|++|.++++|||++.+++||++++ .|++..+.|++||++|.|+.. .+|.++...
T Consensus 867 VLVaT~v~e~GiDip~v~~VIi~~~~~~~l~~l~Qr~GRvgR~g~~g--~~~ll~~~~ 922 (1151)
T 2eyq_A 867 VLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQA--YAWLLTPHP 922 (1151)
T ss_dssp EEEESSTTGGGSCCTTEEEEEETTTTSSCHHHHHHHHTTCCBTTBCE--EEEEEECCG
T ss_pred EEEECCcceeeecccCCcEEEEeCCCCCCHHHHHHHHhccCcCCCce--EEEEEECCc
Confidence 8999999999999999999999999 599999999999999999754 455566543
No 30
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=99.93 E-value=9.2e-25 Score=269.44 Aligned_cols=304 Identities=18% Similarity=0.184 Sum_probs=215.7
Q ss_pred CCCHHHHHHHHHHHHhhccCCcEEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEeCCC-ChHHHHHHHHHHCCCCcE
Q 042857 755 ALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLS-TMPNWLAEFALWAPNLNV 833 (1404)
Q Consensus 755 ~L~pyQlegVnwL~~~~~~~~~~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP~S-ll~nW~rEf~kw~P~l~V 833 (1404)
.|+|+|.+++..++. +.++|+..++|.|||+.++..+.. ..+.+|||+|+. ++.+|.+++..+ ++.+
T Consensus 25 ~~r~~Q~~~i~~il~----g~d~lv~apTGsGKTl~~~lp~l~------~~g~~lvi~P~~aL~~q~~~~l~~~--gi~~ 92 (523)
T 1oyw_A 25 QFRPGQEEIIDTVLS----GRDCLVVMPTGGGKSLCYQIPALL------LNGLTVVVSPLISLMKDQVDQLQAN--GVAA 92 (523)
T ss_dssp SCCTTHHHHHHHHHT----TCCEEEECSCHHHHHHHHHHHHHH------SSSEEEEECSCHHHHHHHHHHHHHT--TCCE
T ss_pred CCCHHHHHHHHHHHc----CCCEEEECCCCcHHHHHHHHHHHH------hCCCEEEECChHHHHHHHHHHHHHc--CCcE
Confidence 689999999998875 789999999999999876544332 136799999985 558899999886 5677
Q ss_pred EEEecchhHHHHHHHhhhccCCCCccccccCCCCceEEEeeHHHHHhh--hccccCCCceEEEEccccccCCCcc---HH
Q 042857 834 VEYHGCAKARAIIRQYEWHASDPDNLNKKTSSYKFNVLLTTYEMILAD--SSHLRGVPWEVLVVDEGHRLKNSGS---KL 908 (1404)
Q Consensus 834 vvy~G~~~~R~~ir~~E~~~~~~~~~~~~~~~~kfdVvITTYe~l~~d--~~~L~~i~w~lVIVDEAHrlKN~~S---k~ 908 (1404)
..++|............. ......+|+++|++.+... ...+...++.+|||||||.+...+. ..
T Consensus 93 ~~l~~~~~~~~~~~~~~~-----------~~~~~~~ilv~Tpe~l~~~~~~~~l~~~~~~~vViDEaH~i~~~g~~fr~~ 161 (523)
T 1oyw_A 93 ACLNSTQTREQQLEVMTG-----------CRTGQIRLLYIAPERLMLDNFLEHLAHWNPVLLAVDEAHCISQWGHDFRPE 161 (523)
T ss_dssp EEECTTSCHHHHHHHHHH-----------HHHTCCSEEEECHHHHTSTTHHHHHTTSCEEEEEESSGGGGCTTSSCCCHH
T ss_pred EEEeCCCCHHHHHHHHHH-----------HhcCCCCEEEECHHHHhChHHHHHHhhCCCCEEEEeCccccCcCCCccHHH
Confidence 777776543322111110 0113578999999999643 2345567899999999999965432 12
Q ss_pred H----HHHhhcccccEEEEeccCCCCChHHHHHHhhhhCCCCCCChhHHHHHhccccchHHHHHHHHhhhhhhhhhhHhh
Q 042857 909 F----SLLNSFSFQHRVLLTGTPLQNNIGEMYNLLNFLQPASFPSLSSFEEKFNDLTTTQKVEELKKLVAPHMLRRLKKD 984 (1404)
Q Consensus 909 ~----~~L~~l~~~~rLLLTGTPlqNnl~EL~sLL~fL~P~~f~s~~~F~~~f~d~~~~~~i~~L~~lL~p~mLRR~K~d 984 (1404)
+ ..+..+.....++|||||-.....++...+.+-.|..+..
T Consensus 162 ~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~----------------------------------- 206 (523)
T 1oyw_A 162 YAALGQLRQRFPTLPFMALTATADDTTRQDIVRLLGLNDPLIQIS----------------------------------- 206 (523)
T ss_dssp HHGGGGHHHHCTTSCEEEEESCCCHHHHHHHHHHHTCCSCEEEEC-----------------------------------
T ss_pred HHHHHHHHHhCCCCCEEEEeCCCCHHHHHHHHHHhCCCCCeEEeC-----------------------------------
Confidence 2 2333445567899999996554455554443322211000
Q ss_pred hhhcCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCcHHHHHH
Q 042857 985 AMQNIPPKTERMVPVELSSIQAEYYRAMLTKNYQILRNIGKGVAQQSMLNIVMQLRKVCNHPYLIPGTEPDSGSVEFLHE 1064 (1404)
Q Consensus 985 V~~~LPpk~e~iV~V~LS~~Qk~~Y~~il~~n~~~L~~~~kg~~~~sllnilm~LRK~cnHP~L~~~~e~~~~~~e~l~~ 1064 (1404)
....|... +.+. ..
T Consensus 207 -~~~r~~l~-~~v~-~~--------------------------------------------------------------- 220 (523)
T 1oyw_A 207 -SFDRPNIR-YMLM-EK--------------------------------------------------------------- 220 (523)
T ss_dssp -CCCCTTEE-EEEE-EC---------------------------------------------------------------
T ss_pred -CCCCCceE-EEEE-eC---------------------------------------------------------------
Confidence 00011111 1111 00
Q ss_pred HHHhhhhHHHHHHHHHHHHHHcCCeEEEEecchhHHHHHHHHHhhhcCCceEEEEeCCCCHHHHHHHHHHHhcCCCceEE
Q 042857 1065 MRIKASAKLTLLHSMLKVLYKEGHRVLIFSQMTKLLDILEDYLNIEFGPKTYERVDGSVSVGDRQAAITRFNQDKSRFVF 1144 (1404)
Q Consensus 1065 ~~i~~SgKl~~L~kLL~kl~~~G~KVLIFSq~~~~LDiLed~L~~~f~g~~y~rLdGs~s~~eRq~~Id~Fn~~~s~~Vf 1144 (1404)
..++..|.++|.. ..+.++|||+......+.+..+|... ++.+..+||+++..+|+.+++.|.++... +
T Consensus 221 -----~~~~~~l~~~l~~--~~~~~~IVf~~sr~~~e~l~~~L~~~--g~~~~~~h~~l~~~~R~~~~~~f~~g~~~--v 289 (523)
T 1oyw_A 221 -----FKPLDQLMRYVQE--QRGKSGIIYCNSRAKVEDTAARLQSK--GISAAAYHAGLENNVRADVQEKFQRDDLQ--I 289 (523)
T ss_dssp -----SSHHHHHHHHHHH--TTTCCEEEECSSHHHHHHHHHHHHHT--TCCEEEECTTSCHHHHHHHHHHHHTTSCS--E
T ss_pred -----CCHHHHHHHHHHh--cCCCcEEEEeCCHHHHHHHHHHHHHC--CCCEEEecCCCCHHHHHHHHHHHHcCCCe--E
Confidence 0112223333332 25789999999999999999999976 78899999999999999999999987655 8
Q ss_pred EeecccccccccccCCCEEEEEcCCCCHhHHHHHHHhhhccCCCCcEEE
Q 042857 1145 LLSTRSCGLGINLATADTVIIYDSDFNPHADIQAMNRAHRIGQSKRLLV 1193 (1404)
Q Consensus 1145 LLSTrAgG~GINL~~AdtVIi~DsdWNP~~d~QAigRahRiGQ~k~V~V 1193 (1404)
|++|.++|+|||++.++.||+||+++++..+.|++||++|.|+...+.+
T Consensus 290 lVaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRaGR~g~~~~~~l 338 (523)
T 1oyw_A 290 VVATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAML 338 (523)
T ss_dssp EEECTTSCTTTCCTTCCEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEE
T ss_pred EEEechhhCCCCccCccEEEEECCCCCHHHHHHHhccccCCCCCceEEE
Confidence 8999999999999999999999999999999999999999998766544
No 31
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=99.93 E-value=2.9e-24 Score=267.79 Aligned_cols=338 Identities=17% Similarity=0.206 Sum_probs=220.3
Q ss_pred CCCHHHHHHHHHHHHhhccCCcEEEEcCCCchHHHHHHHHHHHHHhhcc----CCCcEEEEeCCC-ChHHHHHHHHHHC-
Q 042857 755 ALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFK----AKLPCLVLVPLS-TMPNWLAEFALWA- 828 (1404)
Q Consensus 755 ~L~pyQlegVnwL~~~~~~~~~~ILADEMGLGKTiqaIa~L~~L~~~~~----~~gP~LIVvP~S-ll~nW~rEf~kw~- 828 (1404)
.|+|||.+++..++. ..+.++|+..++|.|||++++..+...+.... ....+|||+|.. +..||.+++..++
T Consensus 43 ~~~~~Q~~~i~~il~--~~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lvl~Ptr~La~Q~~~~~~~~~~ 120 (579)
T 3sqw_A 43 GLTPVQQKTIKPILS--SEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDLALQIEAEVKKIHD 120 (579)
T ss_dssp SCCHHHHHHHHHHHC--SSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHc--cCCCeEEEEcCCCcHHHHHHHHHHHHHHHhccccccCCCeEEEEcchHHHHHHHHHHHHHHHh
Confidence 599999999988763 24678999999999999987776665544432 123699999985 5589999999874
Q ss_pred -----CCCcEEEEecchhHHHHHHHhhhccCCCCccccccCCCCceEEEeeHHHHHhhhcc---ccCCCceEEEEccccc
Q 042857 829 -----PNLNVVEYHGCAKARAIIRQYEWHASDPDNLNKKTSSYKFNVLLTTYEMILADSSH---LRGVPWEVLVVDEGHR 900 (1404)
Q Consensus 829 -----P~l~Vvvy~G~~~~R~~ir~~E~~~~~~~~~~~~~~~~kfdVvITTYe~l~~d~~~---L~~i~w~lVIVDEAHr 900 (1404)
+.+.+....|............ ....+|+|+|++.+...... ..--.+++|||||||+
T Consensus 121 ~~~~~~~~~~~~~~gg~~~~~~~~~l~--------------~~~~~IlV~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~ 186 (579)
T 3sqw_A 121 MNYGLKKYACVSLVGGTDFRAAMNKMN--------------KLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADR 186 (579)
T ss_dssp HCGGGTTSCEEEECTTSCHHHHHHHHH--------------HHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEETHHH
T ss_pred hcccccceEEEEEECCccHHHHHHHHh--------------cCCCCEEEECHHHHHHHHHhccccccccCCEEEEEChHH
Confidence 4567777887766554444321 12468999999998764321 2223578999999999
Q ss_pred cCCCc--cHHHHHHhhcc--------cccEEEEeccCCCCChHHHHHHhhhhCCCCCCChhHHHHHhccccchHHHHHHH
Q 042857 901 LKNSG--SKLFSLLNSFS--------FQHRVLLTGTPLQNNIGEMYNLLNFLQPASFPSLSSFEEKFNDLTTTQKVEELK 970 (1404)
Q Consensus 901 lKN~~--Sk~~~~L~~l~--------~~~rLLLTGTPlqNnl~EL~sLL~fL~P~~f~s~~~F~~~f~d~~~~~~i~~L~ 970 (1404)
+...+ ..+...+..+. ....++||||+-. .+.+ ++..+.... .
T Consensus 187 l~~~gf~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~-~v~~---~~~~~l~~~--------------~--------- 239 (579)
T 3sqw_A 187 LLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDD-KVQK---LANNIMNKK--------------E--------- 239 (579)
T ss_dssp HTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCT-HHHH---HTTTTCCSS--------------E---------
T ss_pred hhcCCCHHHHHHHHHHhhhhhcccccCceEEEEeccCCh-HHHH---HHHHHcCCC--------------c---------
Confidence 87643 22222332221 3357899999732 1111 111110000 0
Q ss_pred HhhhhhhhhhhHhhhhhcCCCceE-EEEEecCCHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHhCCCCCC
Q 042857 971 KLVAPHMLRRLKKDAMQNIPPKTE-RMVPVELSSIQAEYYRAMLTKNYQILRNIGKGVAQQSMLNIVMQLRKVCNHPYLI 1049 (1404)
Q Consensus 971 ~lL~p~mLRR~K~dV~~~LPpk~e-~iV~V~LS~~Qk~~Y~~il~~n~~~L~~~~kg~~~~sllnilm~LRK~cnHP~L~ 1049 (1404)
...+..... .......... ..+.+.-.
T Consensus 240 ----~~~~~~~~~-~~~~~~~~i~~~~~~~~~~----------------------------------------------- 267 (579)
T 3sqw_A 240 ----CLFLDTVDK-NEPEAHERIDQSVVISEKF----------------------------------------------- 267 (579)
T ss_dssp ----EEEEESSCS-SSCSSCTTEEEEEEEESST-----------------------------------------------
T ss_pred ----eEEEeecCc-cccccccccceEEEEecch-----------------------------------------------
Confidence 000000000 0000001111 11111100
Q ss_pred CCCCCCCCcHHHHHHHHHhhhhHHHHHHHHHHHHH--HcCCeEEEEecchhHHHHHHHHHhhhcC-CceEEEEeCCCCHH
Q 042857 1050 PGTEPDSGSVEFLHEMRIKASAKLTLLHSMLKVLY--KEGHRVLIFSQMTKLLDILEDYLNIEFG-PKTYERVDGSVSVG 1126 (1404)
Q Consensus 1050 ~~~e~~~~~~e~l~~~~i~~SgKl~~L~kLL~kl~--~~G~KVLIFSq~~~~LDiLed~L~~~f~-g~~y~rLdGs~s~~ 1126 (1404)
...+...+..++..+. ..+.++|||+.....++.|..+|...++ ++.+..+||.++..
T Consensus 268 -------------------~~~~~~~~~~l~~~~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~ 328 (579)
T 3sqw_A 268 -------------------ANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQN 328 (579)
T ss_dssp -------------------THHHHHHHHHHHHHHHHTTTCCEEEEECSSHHHHHHHHHHHHHHHTTTSCEEEESTTSCHH
T ss_pred -------------------hhhHHHHHHHHHHHHhhcCCCCcEEEECCcHHHHHHHHHHHHHhhcCCCcEEEecCCCCHH
Confidence 0011112222222222 3478999999999999999999987654 78899999999999
Q ss_pred HHHHHHHHHhcCCCceEEEeecccccccccccCCCEEEEEcCCCCHhHHHHHHHhhhccCCCCcEEEEEEeeCCCHHHHH
Q 042857 1127 DRQAAITRFNQDKSRFVFLLSTRSCGLGINLATADTVIIYDSDFNPHADIQAMNRAHRIGQSKRLLVYRLVVRASVEERI 1206 (1404)
Q Consensus 1127 eRq~~Id~Fn~~~s~~VfLLSTrAgG~GINL~~AdtVIi~DsdWNP~~d~QAigRahRiGQ~k~V~VYrLvt~~TvEE~I 1206 (1404)
+|..++++|..+... +|++|.++++|||++.+++||+||+++++..++|++||++|.|+...+. .|++.. |..+
T Consensus 329 ~R~~~~~~F~~g~~~--vLVaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i--~~~~~~--e~~~ 402 (579)
T 3sqw_A 329 KRTSLVKRFKKDESG--ILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSV--LFICKD--ELPF 402 (579)
T ss_dssp HHHHHHHHHHHCSSE--EEEECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEE--EEEEGG--GHHH
T ss_pred HHHHHHHHhhcCCCe--EEEEcchhhcCCCcccCCEEEEcCCCCCHHHhhhhccccccCCCCceEE--EEEccc--HHHH
Confidence 999999999876554 8999999999999999999999999999999999999999999865544 445553 4445
Q ss_pred HHHHHH
Q 042857 1207 LQLAKK 1212 (1404)
Q Consensus 1207 lq~a~~ 1212 (1404)
++...+
T Consensus 403 ~~~l~~ 408 (579)
T 3sqw_A 403 VRELED 408 (579)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 544443
No 32
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=99.92 E-value=4.1e-24 Score=264.78 Aligned_cols=338 Identities=17% Similarity=0.202 Sum_probs=218.4
Q ss_pred CCCHHHHHHHHHHHHhhccCCcEEEEcCCCchHHHHHHHHHHHHHhhccC----CCcEEEEeCCC-ChHHHHHHHHHHC-
Q 042857 755 ALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKA----KLPCLVLVPLS-TMPNWLAEFALWA- 828 (1404)
Q Consensus 755 ~L~pyQlegVnwL~~~~~~~~~~ILADEMGLGKTiqaIa~L~~L~~~~~~----~gP~LIVvP~S-ll~nW~rEf~kw~- 828 (1404)
.|+|+|.+++..++. ..+.++|+..++|.|||++++..+...+..... ...+|||+|.. +..||.++|..++
T Consensus 94 ~~~~~Q~~~i~~~l~--~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lil~Ptr~La~Q~~~~~~~~~~ 171 (563)
T 3i5x_A 94 GLTPVQQKTIKPILS--SEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDLALQIEAEVKKIHD 171 (563)
T ss_dssp SCCHHHHHHHHHHHS--SSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhc--CCCCeEEEECCCCCCccHHHHHHHHHHHHhccccccCCeeEEEEcCcHHHHHHHHHHHHHHHh
Confidence 599999999988763 246789999999999999887776655544331 23699999986 4589999999863
Q ss_pred -----CCCcEEEEecchhHHHHHHHhhhccCCCCccccccCCCCceEEEeeHHHHHhhhcc---ccCCCceEEEEccccc
Q 042857 829 -----PNLNVVEYHGCAKARAIIRQYEWHASDPDNLNKKTSSYKFNVLLTTYEMILADSSH---LRGVPWEVLVVDEGHR 900 (1404)
Q Consensus 829 -----P~l~Vvvy~G~~~~R~~ir~~E~~~~~~~~~~~~~~~~kfdVvITTYe~l~~d~~~---L~~i~w~lVIVDEAHr 900 (1404)
+.+.++.+.|............ ....+|+|+|++.+...... ..--.+++|||||||+
T Consensus 172 ~~~~~~~~~~~~~~g~~~~~~~~~~~~--------------~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~ 237 (563)
T 3i5x_A 172 MNYGLKKYACVSLVGGTDFRAAMNKMN--------------KLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADR 237 (563)
T ss_dssp HCGGGTTSCEEEECTTSCHHHHHHHHH--------------HHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEETHHH
T ss_pred hccccCceeEEEEECCcCHHHHHHHHh--------------cCCCCEEEECcHHHHHHHHhccccccccceEEEEeCHHH
Confidence 3466777777765554443321 12468999999998754321 1223478999999999
Q ss_pred cCCCc--cHHHHHHhhcc--------cccEEEEeccCCCCChHHHHHHhhhhCCCCCCChhHHHHHhccccchHHHHHHH
Q 042857 901 LKNSG--SKLFSLLNSFS--------FQHRVLLTGTPLQNNIGEMYNLLNFLQPASFPSLSSFEEKFNDLTTTQKVEELK 970 (1404)
Q Consensus 901 lKN~~--Sk~~~~L~~l~--------~~~rLLLTGTPlqNnl~EL~sLL~fL~P~~f~s~~~F~~~f~d~~~~~~i~~L~ 970 (1404)
+...+ ......+..+. ....++||||+-. .+.+ ++..+.... .
T Consensus 238 l~~~~f~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~-~v~~---~~~~~~~~~--------------~--------- 290 (563)
T 3i5x_A 238 LLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDD-KVQK---LANNIMNKK--------------E--------- 290 (563)
T ss_dssp HTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCT-HHHH---HTTTTCCSS--------------E---------
T ss_pred HhccchHHHHHHHHHhhhhccccCccCceEEEEEccCCH-HHHH---HHHHhcCCC--------------c---------
Confidence 87543 22222222221 2347899999832 1111 111110000 0
Q ss_pred HhhhhhhhhhhHhhhhhcCCCceE-EEEEecCCHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHhCCCCCC
Q 042857 971 KLVAPHMLRRLKKDAMQNIPPKTE-RMVPVELSSIQAEYYRAMLTKNYQILRNIGKGVAQQSMLNIVMQLRKVCNHPYLI 1049 (1404)
Q Consensus 971 ~lL~p~mLRR~K~dV~~~LPpk~e-~iV~V~LS~~Qk~~Y~~il~~n~~~L~~~~kg~~~~sllnilm~LRK~cnHP~L~ 1049 (1404)
...+..... .......... ..+.+....
T Consensus 291 ----~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~---------------------------------------------- 319 (563)
T 3i5x_A 291 ----CLFLDTVDK-NEPEAHERIDQSVVISEKFA---------------------------------------------- 319 (563)
T ss_dssp ----EEEEESSCS-SSCSSCTTEEEEEEEESSTT----------------------------------------------
T ss_pred ----eEEEeccCC-CCccccccCceEEEECchhH----------------------------------------------
Confidence 000000000 0000001111 111111000
Q ss_pred CCCCCCCCcHHHHHHHHHhhhhHHHHHHHHHHHHH--HcCCeEEEEecchhHHHHHHHHHhhhcC-CceEEEEeCCCCHH
Q 042857 1050 PGTEPDSGSVEFLHEMRIKASAKLTLLHSMLKVLY--KEGHRVLIFSQMTKLLDILEDYLNIEFG-PKTYERVDGSVSVG 1126 (1404)
Q Consensus 1050 ~~~e~~~~~~e~l~~~~i~~SgKl~~L~kLL~kl~--~~G~KVLIFSq~~~~LDiLed~L~~~f~-g~~y~rLdGs~s~~ 1126 (1404)
......+..++..+. ..+.++|||++.....+.|..+|...++ ++.+..+||.++..
T Consensus 320 --------------------~~~~~~~~~l~~~~~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~ 379 (563)
T 3i5x_A 320 --------------------NSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQN 379 (563)
T ss_dssp --------------------HHHHHHHHHHHHHHHHTTTCCEEEEECSCHHHHHHHHHHHHHHHTTTSCEEEESTTSCHH
T ss_pred --------------------hhHHHHHHHHHHHHhhcCCCCcEEEEcCcHHHHHHHHHHHHHhccCCceEEEecCCCCHH
Confidence 000111111222222 3578999999999999999999987654 78899999999999
Q ss_pred HHHHHHHHHhcCCCceEEEeecccccccccccCCCEEEEEcCCCCHhHHHHHHHhhhccCCCCcEEEEEEeeCCCHHHHH
Q 042857 1127 DRQAAITRFNQDKSRFVFLLSTRSCGLGINLATADTVIIYDSDFNPHADIQAMNRAHRIGQSKRLLVYRLVVRASVEERI 1206 (1404)
Q Consensus 1127 eRq~~Id~Fn~~~s~~VfLLSTrAgG~GINL~~AdtVIi~DsdWNP~~d~QAigRahRiGQ~k~V~VYrLvt~~TvEE~I 1206 (1404)
+|..+++.|.++... +|++|.++++|||++.+++||+||+++++..++|++||++|.|+...+ +.|++.. |...
T Consensus 380 ~R~~~~~~f~~g~~~--vLvaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~--i~~~~~~--e~~~ 453 (563)
T 3i5x_A 380 KRTSLVKRFKKDESG--ILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSS--VLFICKD--ELPF 453 (563)
T ss_dssp HHHHHHHHHHHCSSE--EEEECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEE--EEEEEGG--GHHH
T ss_pred HHHHHHHHHhcCCCC--EEEEcchhhcCCCcccCCEEEEECCCCchhhhhhhcCccccCCCCceE--EEEEchh--HHHH
Confidence 999999999876554 899999999999999999999999999999999999999999975544 4455554 4445
Q ss_pred HHHHHH
Q 042857 1207 LQLAKK 1212 (1404)
Q Consensus 1207 lq~a~~ 1212 (1404)
++....
T Consensus 454 ~~~l~~ 459 (563)
T 3i5x_A 454 VRELED 459 (563)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 544443
No 33
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=99.92 E-value=4.7e-24 Score=266.52 Aligned_cols=312 Identities=17% Similarity=0.140 Sum_probs=213.5
Q ss_pred CCCHHHHHHHHHHHHhhccCCcEEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEeCC-CChHHHHHHHHHHCCCCcE
Q 042857 755 ALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPL-STMPNWLAEFALWAPNLNV 833 (1404)
Q Consensus 755 ~L~pyQlegVnwL~~~~~~~~~~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP~-Sll~nW~rEf~kw~P~l~V 833 (1404)
.|+|+|.+++..++. +.++|+..++|.|||+.++..+.. ..+.+|||+|+ +++.+|.+.+..+ ++.+
T Consensus 44 ~~rp~Q~~~i~~il~----g~d~lv~~pTGsGKTl~~~lpal~------~~g~~lVisP~~~L~~q~~~~l~~~--gi~~ 111 (591)
T 2v1x_A 44 KFRPLQLETINVTMA----GKEVFLVMPTGGGKSLCYQLPALC------SDGFTLVICPLISLMEDQLMVLKQL--GISA 111 (591)
T ss_dssp SCCTTHHHHHHHHHT----TCCEEEECCTTSCTTHHHHHHHHT------SSSEEEEECSCHHHHHHHHHHHHHH--TCCE
T ss_pred CCCHHHHHHHHHHHc----CCCEEEEECCCChHHHHHHHHHHH------cCCcEEEEeCHHHHHHHHHHHHHhc--CCcE
Confidence 689999999998866 789999999999999876544432 24589999998 4668999999998 6778
Q ss_pred EEEecchhHHHHHHHhhhccCCCCccccccCCCCceEEEeeHHHHHhh---hc----cccCCCceEEEEccccccCCCcc
Q 042857 834 VEYHGCAKARAIIRQYEWHASDPDNLNKKTSSYKFNVLLTTYEMILAD---SS----HLRGVPWEVLVVDEGHRLKNSGS 906 (1404)
Q Consensus 834 vvy~G~~~~R~~ir~~E~~~~~~~~~~~~~~~~kfdVvITTYe~l~~d---~~----~L~~i~w~lVIVDEAHrlKN~~S 906 (1404)
..++|+.........+... .......+|+++|++.+... .. .+....+.+|||||||.+-..+.
T Consensus 112 ~~l~~~~~~~~~~~~~~~l---------~~~~~~~~Ilv~Tpe~L~~~~~~~~~l~~~~~~~~i~~iViDEAH~is~~g~ 182 (591)
T 2v1x_A 112 TMLNASSSKEHVKWVHAEM---------VNKNSELKLIYVTPEKIAKSKMFMSRLEKAYEARRFTRIAVDEVHCCSQWGH 182 (591)
T ss_dssp EECCSSCCHHHHHHHHHHH---------HCTTCCCCEEEECHHHHHSCHHHHHHHHHHHHTTCEEEEEEETGGGGSTTCT
T ss_pred EEEeCCCCHHHHHHHHHHh---------hcccCCCCEEEEChhHhhccHHHHHHHHhhhhccCCcEEEEECccccccccc
Confidence 8888765433222111100 00124678999999988532 11 22334789999999999865431
Q ss_pred -------HHHHHHhhcccccEEEEeccCCCCChHHHHHHhhhhCCCCCCChhHHHHHhccccchHHHHHHHHhhhhhhhh
Q 042857 907 -------KLFSLLNSFSFQHRVLLTGTPLQNNIGEMYNLLNFLQPASFPSLSSFEEKFNDLTTTQKVEELKKLVAPHMLR 979 (1404)
Q Consensus 907 -------k~~~~L~~l~~~~rLLLTGTPlqNnl~EL~sLL~fL~P~~f~s~~~F~~~f~d~~~~~~i~~L~~lL~p~mLR 979 (1404)
.+......+.....++|||||-.....++...|..-.+..+ .
T Consensus 183 dfr~~~~~l~~l~~~~~~~~ii~lSAT~~~~v~~~i~~~l~~~~~~~~-------------------------------~ 231 (591)
T 2v1x_A 183 DFRPDYKALGILKRQFPNASLIGLTATATNHVLTDAQKILCIEKCFTF-------------------------------T 231 (591)
T ss_dssp TCCGGGGGGGHHHHHCTTSEEEEEESSCCHHHHHHHHHHTTCCSCEEE-------------------------------E
T ss_pred ccHHHHHHHHHHHHhCCCCcEEEEecCCCHHHHHHHHHHhCCCCcEEE-------------------------------e
Confidence 22233344556678999999944333333332221111000 0
Q ss_pred hhHhhhhhcCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCcH
Q 042857 980 RLKKDAMQNIPPKTERMVPVELSSIQAEYYRAMLTKNYQILRNIGKGVAQQSMLNIVMQLRKVCNHPYLIPGTEPDSGSV 1059 (1404)
Q Consensus 980 R~K~dV~~~LPpk~e~iV~V~LS~~Qk~~Y~~il~~n~~~L~~~~kg~~~~sllnilm~LRK~cnHP~L~~~~e~~~~~~ 1059 (1404)
. ....|.....+....-..
T Consensus 232 ~-----~~~r~nl~~~v~~~~~~~-------------------------------------------------------- 250 (591)
T 2v1x_A 232 A-----SFNRPNLYYEVRQKPSNT-------------------------------------------------------- 250 (591)
T ss_dssp C-----CCCCTTEEEEEEECCSSH--------------------------------------------------------
T ss_pred c-----CCCCcccEEEEEeCCCcH--------------------------------------------------------
Confidence 0 001111111111110000
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHcCCeEEEEecchhHHHHHHHHHhhhcCCceEEEEeCCCCHHHHHHHHHHHhcCC
Q 042857 1060 EFLHEMRIKASAKLTLLHSMLKVLYKEGHRVLIFSQMTKLLDILEDYLNIEFGPKTYERVDGSVSVGDRQAAITRFNQDK 1139 (1404)
Q Consensus 1060 e~l~~~~i~~SgKl~~L~kLL~kl~~~G~KVLIFSq~~~~LDiLed~L~~~f~g~~y~rLdGs~s~~eRq~~Id~Fn~~~ 1139 (1404)
..++..|.++|... ..+.++|||+......+.|..+|... ++.+..+||+++..+|..++++|..+.
T Consensus 251 ----------~~~~~~l~~~l~~~-~~~~~~IVf~~sr~~~e~la~~L~~~--g~~~~~~h~~l~~~~R~~~~~~F~~g~ 317 (591)
T 2v1x_A 251 ----------EDFIEDIVKLINGR-YKGQSGIIYCFSQKDSEQVTVSLQNL--GIHAGAYHANLEPEDKTTVHRKWSANE 317 (591)
T ss_dssp ----------HHHHHHHHHHHTTT-TTTCEEEEECSSHHHHHHHHHHHHHT--TCCEEEECTTSCHHHHHHHHHHHHTTS
T ss_pred ----------HHHHHHHHHHHHHh-ccCCCeEEEeCcHHHHHHHHHHHHHC--CCCEEEecCCCCHHHHHHHHHHHHcCC
Confidence 01122222222211 15789999999999999999999876 788999999999999999999998776
Q ss_pred CceEEEeecccccccccccCCCEEEEEcCCCCHhHHHHHHHhhhccCCCCcEEEE
Q 042857 1140 SRFVFLLSTRSCGLGINLATADTVIIYDSDFNPHADIQAMNRAHRIGQSKRLLVY 1194 (1404)
Q Consensus 1140 s~~VfLLSTrAgG~GINL~~AdtVIi~DsdWNP~~d~QAigRahRiGQ~k~V~VY 1194 (1404)
.. +|++|.++|+|||++.++.||+||+++++..|.|++||++|.|+...+.+|
T Consensus 318 ~~--VlVAT~a~~~GID~p~V~~VI~~~~p~s~~~y~Qr~GRaGR~G~~g~~i~l 370 (591)
T 2v1x_A 318 IQ--VVVATVAFGMGIDKPDVRFVIHHSMSKSMENYYQESGRAGRDDMKADCILY 370 (591)
T ss_dssp SS--EEEECTTSCTTCCCSCEEEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEE
T ss_pred Ce--EEEEechhhcCCCcccccEEEEeCCCCCHHHHHHHhccCCcCCCCceEEEE
Confidence 55 889999999999999999999999999999999999999999987665554
No 34
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=99.92 E-value=4.8e-25 Score=281.89 Aligned_cols=309 Identities=18% Similarity=0.244 Sum_probs=209.9
Q ss_pred CCCHHHHHHHHHHHHhhccC--CcEEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEeCCCCh-HHHHHHHHHHCC--
Q 042857 755 ALFPHQLEALNWLRKCWHKS--KNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLSTM-PNWLAEFALWAP-- 829 (1404)
Q Consensus 755 ~L~pyQlegVnwL~~~~~~~--~~~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP~Sll-~nW~rEf~kw~P-- 829 (1404)
.|+|+|.+++..+...+..+ .+.||..++|+|||++++..+...+.. ...+||++|...+ .||.++|..|++
T Consensus 368 ~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l~~---g~qvlvlaPtr~La~Q~~~~l~~~~~~~ 444 (780)
T 1gm5_A 368 KLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEA---GFQTAFMVPTSILAIQHYRRTVESFSKF 444 (780)
T ss_dssp CCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHH---TSCEEEECSCHHHHHHHHHHHHHHHTCS
T ss_pred CCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHHHc---CCeEEEEeCcHHHHHHHHHHHHHHhhhc
Confidence 79999999999998876555 589999999999999998877766543 3479999999655 899999999986
Q ss_pred CCcEEEEecchhHHHHHHHhhhccCCCCccccccCCCCceEEEeeHHHHHhhhccccCCCceEEEEccccccCCCccHHH
Q 042857 830 NLNVVEYHGCAKARAIIRQYEWHASDPDNLNKKTSSYKFNVLLTTYEMILADSSHLRGVPWEVLVVDEGHRLKNSGSKLF 909 (1404)
Q Consensus 830 ~l~Vvvy~G~~~~R~~ir~~E~~~~~~~~~~~~~~~~kfdVvITTYe~l~~d~~~L~~i~w~lVIVDEAHrlKN~~Sk~~ 909 (1404)
++++..++|+.........++. ......+|+|+|++.+.... .-.++++|||||+|++.... .
T Consensus 445 gi~v~~l~G~~~~~~r~~~~~~-----------l~~g~~~IvVgT~~ll~~~~---~~~~l~lVVIDEaHr~g~~q---r 507 (780)
T 1gm5_A 445 NIHVALLIGATTPSEKEKIKSG-----------LRNGQIDVVIGTHALIQEDV---HFKNLGLVIIDEQHRFGVKQ---R 507 (780)
T ss_dssp SCCEEECCSSSCHHHHHHHHHH-----------HHSSCCCEEEECTTHHHHCC---CCSCCCEEEEESCCCC--------
T ss_pred CceEEEEeCCCCHHHHHHHHHH-----------HhcCCCCEEEECHHHHhhhh---hccCCceEEecccchhhHHH---H
Confidence 5889999997654432222211 11235789999999886532 33567899999999983211 1
Q ss_pred HHHhh-cccccEEEEeccCCCCChHHHHHHhhhhCCCCCCChhHHHHHhccccchHHHHHHHHhhhhhhhhhhHhhhhhc
Q 042857 910 SLLNS-FSFQHRVLLTGTPLQNNIGEMYNLLNFLQPASFPSLSSFEEKFNDLTTTQKVEELKKLVAPHMLRRLKKDAMQN 988 (1404)
Q Consensus 910 ~~L~~-l~~~~rLLLTGTPlqNnl~EL~sLL~fL~P~~f~s~~~F~~~f~d~~~~~~i~~L~~lL~p~mLRR~K~dV~~~ 988 (1404)
..+.. ....+.++|||||+...+...+ |.++. -.++..
T Consensus 508 ~~l~~~~~~~~vL~mSATp~p~tl~~~~--------------------~g~~~---------------------~s~i~~ 546 (780)
T 1gm5_A 508 EALMNKGKMVDTLVMSATPIPRSMALAF--------------------YGDLD---------------------VTVIDE 546 (780)
T ss_dssp CCCCSSSSCCCEEEEESSCCCHHHHHHH--------------------TCCSS---------------------CEEECC
T ss_pred HHHHHhCCCCCEEEEeCCCCHHHHHHHH--------------------hCCcc---------------------eeeeec
Confidence 11111 2346789999999764332110 11100 001112
Q ss_pred CCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCcHHHHHHHHHh
Q 042857 989 IPPKTERMVPVELSSIQAEYYRAMLTKNYQILRNIGKGVAQQSMLNIVMQLRKVCNHPYLIPGTEPDSGSVEFLHEMRIK 1068 (1404)
Q Consensus 989 LPpk~e~iV~V~LS~~Qk~~Y~~il~~n~~~L~~~~kg~~~~sllnilm~LRK~cnHP~L~~~~e~~~~~~e~l~~~~i~ 1068 (1404)
+|+....+...-...
T Consensus 547 ~p~~r~~i~~~~~~~----------------------------------------------------------------- 561 (780)
T 1gm5_A 547 MPPGRKEVQTMLVPM----------------------------------------------------------------- 561 (780)
T ss_dssp CCSSCCCCEECCCCS-----------------------------------------------------------------
T ss_pred cCCCCcceEEEEecc-----------------------------------------------------------------
Confidence 332211110000000
Q ss_pred hhhHHHHHHHHHHHHHHcCCeEEEEecch--------hHHHHHHHHHhh-hcCCceEEEEeCCCCHHHHHHHHHHHhcCC
Q 042857 1069 ASAKLTLLHSMLKVLYKEGHRVLIFSQMT--------KLLDILEDYLNI-EFGPKTYERVDGSVSVGDRQAAITRFNQDK 1139 (1404)
Q Consensus 1069 ~SgKl~~L~kLL~kl~~~G~KVLIFSq~~--------~~LDiLed~L~~-~f~g~~y~rLdGs~s~~eRq~~Id~Fn~~~ 1139 (1404)
.+...+...+......|++++|||+.. ..++.+.+.|.. .++++.+..+||+++..+|++++++|.++.
T Consensus 562 --~~~~~l~~~i~~~l~~g~qvlVf~~~ie~se~l~~~~a~~l~~~L~~~~~~~~~v~~lHG~m~~~eR~~v~~~F~~G~ 639 (780)
T 1gm5_A 562 --DRVNEVYEFVRQEVMRGGQAFIVYPLIEESDKLNVKSAVEMYEYLSKEVFPEFKLGLMHGRLSQEEKDRVMLEFAEGR 639 (780)
T ss_dssp --STHHHHHHHHHHHTTTSCCBCCBCCCC--------CHHHHHHHSGGGSCC---CBCCCCSSSCCSCSHHHHHHHTTTS
T ss_pred --chHHHHHHHHHHHHhcCCcEEEEecchhhhhhhhHHHHHHHHHHHHhhhcCCCcEEEEeCCCCHHHHHHHHHHHHCCC
Confidence 001112223333345677888888755 345677777877 566788999999999999999999998766
Q ss_pred CceEEEeecccccccccccCCCEEEEEcCC-CCHhHHHHHHHhhhccCCCCcEEE
Q 042857 1140 SRFVFLLSTRSCGLGINLATADTVIIYDSD-FNPHADIQAMNRAHRIGQSKRLLV 1193 (1404)
Q Consensus 1140 s~~VfLLSTrAgG~GINL~~AdtVIi~Dsd-WNP~~d~QAigRahRiGQ~k~V~V 1193 (1404)
.. +|++|.++++|||++.+++||++|++ |+...+.|++||++|.|+...+.+
T Consensus 640 ~~--ILVaT~vie~GIDiP~v~~VIi~d~~r~~l~~l~Qr~GRaGR~g~~g~~il 692 (780)
T 1gm5_A 640 YD--ILVSTTVIEVGIDVPRANVMVIENPERFGLAQLHQLRGRVGRGGQEAYCFL 692 (780)
T ss_dssp SS--BCCCSSCCCSCSCCTTCCEEEBCSCSSSCTTHHHHHHHTSCCSSTTCEEEC
T ss_pred Ce--EEEECCCCCccccCCCCCEEEEeCCCCCCHHHHHHHhcccCcCCCCCEEEE
Confidence 55 89999999999999999999999998 588999999999999998665443
No 35
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=99.91 E-value=1.1e-24 Score=267.59 Aligned_cols=313 Identities=17% Similarity=0.232 Sum_probs=189.5
Q ss_pred CCCHHHHHHHHHHHHhhccCCcEEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEeCCC-ChHHHHHHHHHHCCCCcE
Q 042857 755 ALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLS-TMPNWLAEFALWAPNLNV 833 (1404)
Q Consensus 755 ~L~pyQlegVnwL~~~~~~~~~~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP~S-ll~nW~rEf~kw~P~l~V 833 (1404)
.|+|||.+++..++.. .+.++||...+|+|||++++..+...+......+.+|||+|.. ++.||.++|..+++...+
T Consensus 141 ~p~~~Q~~ai~~i~~~--~~~~~ll~apTGsGKT~~~~~~il~~l~~~~~~~~vLvl~P~~~L~~Q~~~~~~~~~~~~~~ 218 (508)
T 3fho_A 141 XXXKIQEKALPLLLSN--PPRNMIGQSQSGTGKTAAFALTMLSRVDASVPKPQAICLAPSRELARQIMDVVTEMGKYTEV 218 (508)
T ss_dssp ECCCTTSSSHHHHHCS--SCCCEEEECCSSTTSHHHHHHHHHHHSCTTCCSCCEEEECSCHHHHHHHHHHHHHHSTTSSC
T ss_pred CcHHHHHHHHHHHHcC--CCCCEEEECCCCccHHHHHHHHHHHHHHhCCCCceEEEEECcHHHHHHHHHHHHHhCCccCe
Confidence 5899999999887652 2489999999999999998777766654544455899999997 559999999999865443
Q ss_pred EEEecchhHHHHHHHhhhccCCCCccccccCCCCceEEEeeHHHHHhhh--ccccCCCceEEEEccccccCCC---ccHH
Q 042857 834 VEYHGCAKARAIIRQYEWHASDPDNLNKKTSSYKFNVLLTTYEMILADS--SHLRGVPWEVLVVDEGHRLKNS---GSKL 908 (1404)
Q Consensus 834 vvy~G~~~~R~~ir~~E~~~~~~~~~~~~~~~~kfdVvITTYe~l~~d~--~~L~~i~w~lVIVDEAHrlKN~---~Sk~ 908 (1404)
.+..+...... .......+|+|+|++.+.... ..+....+++|||||+|++... ....
T Consensus 219 ~~~~~~~~~~~-----------------~~~~~~~~Ivv~T~~~l~~~l~~~~~~~~~~~lIIiDEaH~~~~~~~~~~~~ 281 (508)
T 3fho_A 219 KTAFGIKDSVP-----------------KGAKIDAQIVIGTPGTVMDLMKRRQLDARDIKVFVLDEADNMLDQQGLGDQS 281 (508)
T ss_dssp CEEC---------------------------CCCCSEEEECHHHHHHHHHTTCSCCTTCCEEEECCHHHHTTC--CHHHH
T ss_pred eEEEEeCCccc-----------------ccccCCCCEEEECHHHHHHHHHcCCccccCCCEEEEechhhhcccCCcHHHH
Confidence 33332211100 011225789999999987642 2233456899999999998642 2333
Q ss_pred HHHHhhccc-ccEEEEeccCCCCChHHHHHHhhhhCCCCCCChhHHHHHhccccchHHHHHHHHhhhhhhhhhhHhhhhh
Q 042857 909 FSLLNSFSF-QHRVLLTGTPLQNNIGEMYNLLNFLQPASFPSLSSFEEKFNDLTTTQKVEELKKLVAPHMLRRLKKDAMQ 987 (1404)
Q Consensus 909 ~~~L~~l~~-~~rLLLTGTPlqNnl~EL~sLL~fL~P~~f~s~~~F~~~f~d~~~~~~i~~L~~lL~p~mLRR~K~dV~~ 987 (1404)
...+..+.. ...++|||||- +.+.++.. .+.+.. ..+. .... ..
T Consensus 282 ~~i~~~~~~~~~~i~lSAT~~-~~~~~~~~---~~~~~~-----------------------------~~i~-~~~~-~~ 326 (508)
T 3fho_A 282 MRIKHLLPRNTQIVLFSATFS-ERVEKYAE---RFAPNA-----------------------------NEIR-LKTE-EL 326 (508)
T ss_dssp HHHHHHSCTTCEEEEEESCCS-THHHHHHH---HHSTTC-----------------------------EEEC-CCCC-C-
T ss_pred HHHHHhCCcCCeEEEEeCCCC-HHHHHHHH---HhcCCC-----------------------------eEEE-eccc-cC
Confidence 344444543 34588999983 21222111 110000 0000 0000 00
Q ss_pred cCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCcHHHHHHHHH
Q 042857 988 NIPPKTERMVPVELSSIQAEYYRAMLTKNYQILRNIGKGVAQQSMLNIVMQLRKVCNHPYLIPGTEPDSGSVEFLHEMRI 1067 (1404)
Q Consensus 988 ~LPpk~e~iV~V~LS~~Qk~~Y~~il~~n~~~L~~~~kg~~~~sllnilm~LRK~cnHP~L~~~~e~~~~~~e~l~~~~i 1067 (1404)
..+......+.+.
T Consensus 327 ~~~~~~~~~~~~~------------------------------------------------------------------- 339 (508)
T 3fho_A 327 SVEGIKQLYMDCQ------------------------------------------------------------------- 339 (508)
T ss_dssp ---CCCCEEEEC--------------------------------------------------------------------
T ss_pred CcccceEEEEECC-------------------------------------------------------------------
Confidence 0000000111110
Q ss_pred hhhhHHHHHHHHHHHHHHcCCeEEEEecchhHHHHHHHHHhhhcCCceEEEEeCCCCHHHHHHHHHHHhcCCCceEEEee
Q 042857 1068 KASAKLTLLHSMLKVLYKEGHRVLIFSQMTKLLDILEDYLNIEFGPKTYERVDGSVSVGDRQAAITRFNQDKSRFVFLLS 1147 (1404)
Q Consensus 1068 ~~SgKl~~L~kLL~kl~~~G~KVLIFSq~~~~LDiLed~L~~~f~g~~y~rLdGs~s~~eRq~~Id~Fn~~~s~~VfLLS 1147 (1404)
....|...|..++... .+.++|||++....++.+..+|... ++.+..++|+++..+|+.+++.|+++... +|++
T Consensus 340 ~~~~k~~~l~~ll~~~--~~~~~LVF~~s~~~a~~l~~~L~~~--~~~v~~~hg~~~~~~R~~il~~f~~g~~~--VLVa 413 (508)
T 3fho_A 340 SEEHKYNVLVELYGLL--TIGQSIIFCKKKDTAEEIARRMTAD--GHTVACLTGNLEGAQRDAIMDSFRVGTSK--VLVT 413 (508)
T ss_dssp -CHHHHHHHHHHHC-----CCCEEEBCSSTTTTTHHHHHHTTT--TCCCCEEC-----CTTGGGTHHHHSSSCC--CCEE
T ss_pred chHHHHHHHHHHHHhc--CCCcEEEEECCHHHHHHHHHHHHhC--CCcEEEEeCCCCHHHHHHHHHHHHCCCCe--EEEe
Confidence 0122334444444432 4679999999999999999999875 77888999999999999999999876655 8999
Q ss_pred cccccccccccCCCEEEEEcCC------CCHhHHHHHHHhhhccCCCCcEEEE
Q 042857 1148 TRSCGLGINLATADTVIIYDSD------FNPHADIQAMNRAHRIGQSKRLLVY 1194 (1404)
Q Consensus 1148 TrAgG~GINL~~AdtVIi~Dsd------WNP~~d~QAigRahRiGQ~k~V~VY 1194 (1404)
|.++++|||++.+++||+||++ +++..+.|++||++|.|+...+.+|
T Consensus 414 T~~l~~GiDip~v~~VI~~~~p~~~~~~~s~~~~~Qr~GRagR~g~~g~~i~l 466 (508)
T 3fho_A 414 TNVIARGIDVSQVNLVVNYDMPLDQAGRPDPQTYLHRIGRTGRFGRVGVSINF 466 (508)
T ss_dssp CC-----CCCTTCCEEEC----CC-----CTHHHHHTTSCCC-----CEEEEE
T ss_pred CChhhcCCCccCCCEEEEECCCCcccCCCCHHHHHHHhhhcCCCCCCcEEEEE
Confidence 9999999999999999999999 7899999999999999976665444
No 36
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=99.90 E-value=2.4e-24 Score=261.85 Aligned_cols=311 Identities=18% Similarity=0.241 Sum_probs=108.5
Q ss_pred CCCHHHHHHHHHHHHhhccCCcEEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEeCCCCh-HHHHHHHHHH---CCC
Q 042857 755 ALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLSTM-PNWLAEFALW---APN 830 (1404)
Q Consensus 755 ~L~pyQlegVnwL~~~~~~~~~~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP~Sll-~nW~rEf~kw---~P~ 830 (1404)
.|+|+|.+++..++. ..+.++|+..++|.|||++++..+...+........+|||+|...| .||.+.+..+ ++.
T Consensus 114 ~p~~~Q~~ai~~il~--~~~~~~l~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~ 191 (479)
T 3fmp_B 114 RPSKIQENALPLMLA--EPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYPE 191 (479)
T ss_dssp SCCHHHHHHHHHHTS--BSCCEEEEECCSSSSHHHHHHHHHHTTCCTTSCSCCEEEECSSHHHHHHHHHHHHHHHTTSTT
T ss_pred CCCHHHHHHHHHHHc--CCCCcEEEEcCCCCchhHHHHHHHHHHHhhcCCCCcEEEEeChHHHHHHHHHHHHHHHhhCCC
Confidence 589999999988865 2358899999999999999776666554444444479999999755 7787776655 467
Q ss_pred CcEEEEecchhHHHHHHHhhhccCCCCccccccCCCCceEEEeeHHHHHhhhc---cccCCCceEEEEccccccCCCc--
Q 042857 831 LNVVEYHGCAKARAIIRQYEWHASDPDNLNKKTSSYKFNVLLTTYEMILADSS---HLRGVPWEVLVVDEGHRLKNSG-- 905 (1404)
Q Consensus 831 l~Vvvy~G~~~~R~~ir~~E~~~~~~~~~~~~~~~~kfdVvITTYe~l~~d~~---~L~~i~w~lVIVDEAHrlKN~~-- 905 (1404)
+.+....|..... .......+|+|+|++.+..... .+..-++++|||||+|++....
T Consensus 192 ~~~~~~~~~~~~~------------------~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEah~~~~~~~~ 253 (479)
T 3fmp_B 192 LKLAYAVRGNKLE------------------RGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGH 253 (479)
T ss_dssp CCEEEESTTCCCC------------------TTCCCCCSEEEECHHHHHHHHTTSCCCCGGGCCEEEECCHHHHHTSTTH
T ss_pred ceEEEEeCCcccc------------------ccccCCCCEEEECchHHHHHHHhcCCcCcccCCEEEEECHHHHhhcCCc
Confidence 7777766643210 1112356899999999976542 2333468899999999985422
Q ss_pred -cHHHHHHhhcc-cccEEEEeccCCCCChHHHHHHhhhhCCCCCCChhHHHHHhccccchHHHHHHHHhhhhhhhhhhHh
Q 042857 906 -SKLFSLLNSFS-FQHRVLLTGTPLQNNIGEMYNLLNFLQPASFPSLSSFEEKFNDLTTTQKVEELKKLVAPHMLRRLKK 983 (1404)
Q Consensus 906 -Sk~~~~L~~l~-~~~rLLLTGTPlqNnl~EL~sLL~fL~P~~f~s~~~F~~~f~d~~~~~~i~~L~~lL~p~mLRR~K~ 983 (1404)
......+..+. ....+++||||-. +++.+...+
T Consensus 254 ~~~~~~i~~~~~~~~~~i~~SAT~~~----~~~~~~~~~----------------------------------------- 288 (479)
T 3fmp_B 254 QDQSIRIQRMLPRNCQMLLFSATFED----SVWKFAQKV----------------------------------------- 288 (479)
T ss_dssp HHHHHHHHTTSCTTSEEEEEESCCCH----HHHHHHHHH-----------------------------------------
T ss_pred HHHHHHHHhhCCccceEEEEeCCCCH----HHHHHHHHH-----------------------------------------
Confidence 22233333333 3356889999821 122111110
Q ss_pred hhhhcCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCcHHHHH
Q 042857 984 DAMQNIPPKTERMVPVELSSIQAEYYRAMLTKNYQILRNIGKGVAQQSMLNIVMQLRKVCNHPYLIPGTEPDSGSVEFLH 1063 (1404)
Q Consensus 984 dV~~~LPpk~e~iV~V~LS~~Qk~~Y~~il~~n~~~L~~~~kg~~~~sllnilm~LRK~cnHP~L~~~~e~~~~~~e~l~ 1063 (1404)
+|.... +.+. ..... ... +.+ .++..
T Consensus 289 -----~~~~~~--i~~~--~~~~~-----~~~-----------------------~~~----~~~~~------------- 314 (479)
T 3fmp_B 289 -----VPDPNV--IKLK--REEET-----LDT-----------------------IKQ----YYVLC------------- 314 (479)
T ss_dssp -----SSSEEE--EEEC---------------------------------------------------------------
T ss_pred -----cCCCeE--Eecc--ccccC-----cCC-----------------------ceE----EEEEe-------------
Confidence 111111 1111 00000 000 000 00000
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHcCCeEEEEecchhHHHHHHHHHhhhcCCceEEEEeCCCCHHHHHHHHHHHhcCCCceE
Q 042857 1064 EMRIKASAKLTLLHSMLKVLYKEGHRVLIFSQMTKLLDILEDYLNIEFGPKTYERVDGSVSVGDRQAAITRFNQDKSRFV 1143 (1404)
Q Consensus 1064 ~~~i~~SgKl~~L~kLL~kl~~~G~KVLIFSq~~~~LDiLed~L~~~f~g~~y~rLdGs~s~~eRq~~Id~Fn~~~s~~V 1143 (1404)
.....|+..|..++... .+.++|||++.....+.|..+|... ++.+..+||.++..+|+.+++.|+++...
T Consensus 315 ---~~~~~~~~~l~~~~~~~--~~~~~lvF~~s~~~~~~l~~~L~~~--~~~v~~lh~~~~~~~R~~~~~~f~~g~~~-- 385 (479)
T 3fmp_B 315 ---SSRDEKFQALCNLYGAI--TIAQAMIFCHTRKTASWLAAELSKE--GHQVALLSGEMMVEQRAAVIERFREGKEK-- 385 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ---CCHHHHHHHHHHHHhhc--cCCceEEEeCcHHHHHHHHHHHHhC--CccEEEecCCCCHHHHHHHHHHHHcCCCc--
Confidence 00122334444444432 3568999999999999999999876 67888999999999999999999876555
Q ss_pred EEeecccccccccccCCCEEEEEcCCCCH------hHHHHHHHhhhccCCCCcEEE
Q 042857 1144 FLLSTRSCGLGINLATADTVIIYDSDFNP------HADIQAMNRAHRIGQSKRLLV 1193 (1404)
Q Consensus 1144 fLLSTrAgG~GINL~~AdtVIi~DsdWNP------~~d~QAigRahRiGQ~k~V~V 1193 (1404)
+|++|.+++.|||++.+++||+||++|++ ..++|++||++|.|+...+.+
T Consensus 386 iLv~T~~~~~GlDip~v~~VI~~d~p~~~~~~~s~~~~~Qr~GRagR~g~~G~~i~ 441 (479)
T 3fmp_B 386 VLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVN 441 (479)
T ss_dssp --------------------------------------------------------
T ss_pred EEEEccccccCCccccCCEEEEecCCCCCccCCCHHHHHHHhcccccCCCCceEEE
Confidence 89999999999999999999999999876 689999999999997655543
No 37
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=99.90 E-value=9.6e-22 Score=258.43 Aligned_cols=360 Identities=16% Similarity=0.153 Sum_probs=221.4
Q ss_pred CCCCCHHHHHHHHHHHHhhccCCcEEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEeCCC-ChHHHHHHHHHHCCCC
Q 042857 753 GGALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLS-TMPNWLAEFALWAPNL 831 (1404)
Q Consensus 753 g~~L~pyQlegVnwL~~~~~~~~~~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP~S-ll~nW~rEf~kw~P~l 831 (1404)
+.+|+|||.+++..+.. +.++|++.++|+|||+++...+...+. ..+.+||++|.. +..||.++|..+++
T Consensus 84 ~f~L~~~Q~eai~~l~~----g~~vLV~apTGSGKTlva~lai~~~l~---~g~rvL~l~PtkaLa~Q~~~~l~~~~~-- 154 (1010)
T 2xgj_A 84 PFTLDPFQDTAISCIDR----GESVLVSAHTSAGKTVVAEYAIAQSLK---NKQRVIYTSPIKALSNQKYRELLAEFG-- 154 (1010)
T ss_dssp SSCCCHHHHHHHHHHHH----TCEEEEECCTTSCHHHHHHHHHHHHHH---TTCEEEEEESSHHHHHHHHHHHHHHHS--
T ss_pred CCCCCHHHHHHHHHHHc----CCCEEEECCCCCChHHHHHHHHHHHhc---cCCeEEEECChHHHHHHHHHHHHHHhC--
Confidence 45799999999998865 789999999999999988766655442 235799999984 55899999999986
Q ss_pred cEEEEecchhHHHHHHHhhhccCCCCccccccCCCCceEEEeeHHHHHhhhc--cccCCCceEEEEccccccCCCc--cH
Q 042857 832 NVVEYHGCAKARAIIRQYEWHASDPDNLNKKTSSYKFNVLLTTYEMILADSS--HLRGVPWEVLVVDEGHRLKNSG--SK 907 (1404)
Q Consensus 832 ~Vvvy~G~~~~R~~ir~~E~~~~~~~~~~~~~~~~kfdVvITTYe~l~~d~~--~L~~i~w~lVIVDEAHrlKN~~--Sk 907 (1404)
.+..++|+... ....+|+|+|++.+..... ...--.+++|||||+|++.+.. ..
T Consensus 155 ~vglltGd~~~----------------------~~~~~IvV~Tpe~L~~~L~~~~~~l~~l~lVViDEaH~l~d~~rg~~ 212 (1010)
T 2xgj_A 155 DVGLMTGDITI----------------------NPDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRDKERGVV 212 (1010)
T ss_dssp CEEEECSSCEE----------------------CTTCSEEEEEHHHHHHHHHHTCTTGGGEEEEEEETGGGGGCTTTHHH
T ss_pred CEEEEeCCCcc----------------------CCCCCEEEEcHHHHHHHHHcCcchhhcCCEEEEechhhhcccchhHH
Confidence 67777774321 1246899999998865321 1122367899999999997653 33
Q ss_pred HHHHHhhcc-cccEEEEeccCCCCChHHHHHHhhhhCCCCCCChhHHHHHhccccchHHHHHHHHhhhhhhhhhhHhhhh
Q 042857 908 LFSLLNSFS-FQHRVLLTGTPLQNNIGEMYNLLNFLQPASFPSLSSFEEKFNDLTTTQKVEELKKLVAPHMLRRLKKDAM 986 (1404)
Q Consensus 908 ~~~~L~~l~-~~~rLLLTGTPlqNnl~EL~sLL~fL~P~~f~s~~~F~~~f~d~~~~~~i~~L~~lL~p~mLRR~K~dV~ 986 (1404)
....+..+. ....|+||||+ . +..++...+..+... +..+.. .
T Consensus 213 ~e~il~~l~~~~~il~LSATi-~-n~~e~a~~l~~~~~~-----------------------------~~~vi~-----~ 256 (1010)
T 2xgj_A 213 WEETIILLPDKVRYVFLSATI-P-NAMEFAEWICKIHSQ-----------------------------PCHIVY-----T 256 (1010)
T ss_dssp HHHHHHHSCTTCEEEEEECCC-T-THHHHHHHHHHHHTS-----------------------------CEEEEE-----E
T ss_pred HHHHHHhcCCCCeEEEEcCCC-C-CHHHHHHHHHhhcCC-----------------------------CeEEEe-----c
Confidence 344455554 34568899995 2 233332222111000 000000 0
Q ss_pred hcCC-CceEEEEE---------ecCC-HHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHhCCCCCCCCCCCC
Q 042857 987 QNIP-PKTERMVP---------VELS-SIQAEYYRAMLTKNYQILRNIGKGVAQQSMLNIVMQLRKVCNHPYLIPGTEPD 1055 (1404)
Q Consensus 987 ~~LP-pk~e~iV~---------V~LS-~~Qk~~Y~~il~~n~~~L~~~~kg~~~~sllnilm~LRK~cnHP~L~~~~e~~ 1055 (1404)
..-| +...+++. +... ......|...+ ...... ....|. + ..+
T Consensus 257 ~~rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~l~~~---------------~~~~~~--~-~~~- 310 (1010)
T 2xgj_A 257 NFRPTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAM-------ASISNQ---------------IGDDPN--S-TDS- 310 (1010)
T ss_dssp CCCSSCEEEEEEETTSSCCEEEECTTCCBCHHHHHHHH-------HTCC-------------------------------
T ss_pred CCCcccceEEEEecCCcceeeeeccccccchHHHHHHH-------HHHhhh---------------hccccc--c-ccc-
Confidence 0011 11111111 0000 00000011100 000000 000000 0 000
Q ss_pred CCcHHHHHHHHHhh-hh-HHHHHHHHHHHHHHcC-CeEEEEecchhHHHHHHHHHhhhc-C-------------------
Q 042857 1056 SGSVEFLHEMRIKA-SA-KLTLLHSMLKVLYKEG-HRVLIFSQMTKLLDILEDYLNIEF-G------------------- 1112 (1404)
Q Consensus 1056 ~~~~e~l~~~~i~~-Sg-Kl~~L~kLL~kl~~~G-~KVLIFSq~~~~LDiLed~L~~~f-~------------------- 1112 (1404)
.+... ....... .+ ....+..++..+...+ .++|||+.....++.+..+|.... .
T Consensus 311 ~g~~~--~~~k~~~~~~~~~~~l~~l~~~l~~~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l 388 (1010)
T 2xgj_A 311 RGKKG--QTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALL 388 (1010)
T ss_dssp --------------------CHHHHHHHHHHHHTCCSEEEEESSHHHHHHHHHTTTTSCCCCHHHHHHHHHHHHHHHTTS
T ss_pred ccccc--cccccccccccchHHHHHHHHHHHhcCCCCEEEEECCHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhc
Confidence 00000 0000000 00 0233445555555444 599999999999998888876420 0
Q ss_pred -----------------CceEEEEeCCCCHHHHHHHHHHHhcCCCceEEEeecccccccccccCCCEEEE----EcC---
Q 042857 1113 -----------------PKTYERVDGSVSVGDRQAAITRFNQDKSRFVFLLSTRSCGLGINLATADTVII----YDS--- 1168 (1404)
Q Consensus 1113 -----------------g~~y~rLdGs~s~~eRq~~Id~Fn~~~s~~VfLLSTrAgG~GINL~~AdtVIi----~Ds--- 1168 (1404)
...+..+||+++..+|+.+++.|.++... +|++|.++++|||+++++.||. ||.
T Consensus 389 ~~~d~~l~~~~~l~~~l~~gI~~~Hggl~~~eR~~ve~~F~~G~ik--VLVAT~~la~GIDiP~~~vVI~~~~kfd~~~~ 466 (1010)
T 2xgj_A 389 PETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLK--VLFATETFSIGLNMPAKTVVFTSVRKWDGQQF 466 (1010)
T ss_dssp CGGGTTCHHHHHHHHHHHHTEEEESTTSCHHHHHHHHHHHHTTCCS--EEEEEGGGGGSTTCCBSEEEESCSEEECSSCE
T ss_pred chhhhcchhHHHHHHHHhCCeeEECCCCCHHHHHHHHHHHhcCCCc--EEEEehHhhccCCCCCceEEEeCCcccCCcCC
Confidence 01267899999999999999999876655 8999999999999999999999 999
Q ss_pred -CCCHhHHHHHHHhhhccCCCCcEEEEEEeeCCCHHHHHHHH
Q 042857 1169 -DFNPHADIQAMNRAHRIGQSKRLLVYRLVVRASVEERILQL 1209 (1404)
Q Consensus 1169 -dWNP~~d~QAigRahRiGQ~k~V~VYrLvt~~TvEE~Ilq~ 1209 (1404)
+|+|..+.|++||++|.|+.....+|.|++.+.-+..+.++
T Consensus 467 rp~s~~~y~Qr~GRAGR~G~d~~G~vi~l~~~~~e~~~~~~l 508 (1010)
T 2xgj_A 467 RWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKMEPQVAKGM 508 (1010)
T ss_dssp EECCHHHHHHHHTTBCCTTTCSSEEEEEEECSCCCHHHHHHH
T ss_pred ccCCHHHHhHhhhhcccCCCCCceEEEEEECCCCCHHHHHHH
Confidence 89999999999999999998888899999876444444444
No 38
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=99.86 E-value=1.4e-20 Score=239.77 Aligned_cols=321 Identities=21% Similarity=0.206 Sum_probs=213.4
Q ss_pred CCCHHHHHHHHHHHHhhccCCcEEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEeCCC-ChHHHHHHHHHHCC-CCc
Q 042857 755 ALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLS-TMPNWLAEFALWAP-NLN 832 (1404)
Q Consensus 755 ~L~pyQlegVnwL~~~~~~~~~~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP~S-ll~nW~rEf~kw~P-~l~ 832 (1404)
.|+|+|.+++..+. .+.++|++.++|.|||+++..++...+.. .+.+|+++|.. +..+|.++|++|.+ +++
T Consensus 25 ~l~~~Q~~~i~~i~----~~~~~lv~apTGsGKT~~~~l~il~~~~~---~~~~l~i~P~r~La~q~~~~~~~~~~~g~~ 97 (702)
T 2p6r_A 25 ELFPPQAEAVEKVF----SGKNLLLAMPTAAGKTLLAEMAMVREAIK---GGKSLYVVPLRALAGEKYESFKKWEKIGLR 97 (702)
T ss_dssp CCCCCCHHHHHHHT----TCSCEEEECSSHHHHHHHHHHHHHHHHHT---TCCEEEEESSHHHHHHHHHHHTTTTTTTCC
T ss_pred CCCHHHHHHHHHHh----CCCcEEEEcCCccHHHHHHHHHHHHHHHh---CCcEEEEeCcHHHHHHHHHHHHHHHhcCCE
Confidence 69999999998854 48999999999999999997666554432 45799999998 56899999976654 678
Q ss_pred EEEEecchhHHHHHHHhhhccCCCCccccccCCCCceEEEeeHHHHHhhhc----cccCCCceEEEEccccccCCC--cc
Q 042857 833 VVEYHGCAKARAIIRQYEWHASDPDNLNKKTSSYKFNVLLTTYEMILADSS----HLRGVPWEVLVVDEGHRLKNS--GS 906 (1404)
Q Consensus 833 Vvvy~G~~~~R~~ir~~E~~~~~~~~~~~~~~~~kfdVvITTYe~l~~d~~----~L~~i~w~lVIVDEAHrlKN~--~S 906 (1404)
+..++|..... .......+|+|+|++.+..... .+. ++++|||||+|.+... +.
T Consensus 98 v~~~~G~~~~~------------------~~~~~~~~Iiv~Tpe~l~~~l~~~~~~l~--~~~~vIiDE~H~l~~~~r~~ 157 (702)
T 2p6r_A 98 IGISTGDYESR------------------DEHLGDCDIIVTTSEKADSLIRNRASWIK--AVSCLVVDEIHLLDSEKRGA 157 (702)
T ss_dssp EEEECSSCBCC------------------SSCSTTCSEEEEEHHHHHHHHHTTCSGGG--GCCEEEETTGGGGGCTTTHH
T ss_pred EEEEeCCCCcc------------------hhhccCCCEEEECHHHHHHHHHcChhHHh--hcCEEEEeeeeecCCCCccc
Confidence 88888853210 0112367999999998865322 122 4679999999998752 23
Q ss_pred HHHHHHhhc----ccccEEEEeccCCCCChHHHHHHhhhhCCCCCCChhHHHHHhccccchHHHHHHHHhhhhhhhhhhH
Q 042857 907 KLFSLLNSF----SFQHRVLLTGTPLQNNIGEMYNLLNFLQPASFPSLSSFEEKFNDLTTTQKVEELKKLVAPHMLRRLK 982 (1404)
Q Consensus 907 k~~~~L~~l----~~~~rLLLTGTPlqNnl~EL~sLL~fL~P~~f~s~~~F~~~f~d~~~~~~i~~L~~lL~p~mLRR~K 982 (1404)
.+...+..+ .....++||||+- +..++.. |+....|..
T Consensus 158 ~~~~ll~~l~~~~~~~~ii~lSATl~--n~~~~~~---~l~~~~~~~--------------------------------- 199 (702)
T 2p6r_A 158 TLEILVTKMRRMNKALRVIGLSATAP--NVTEIAE---WLDADYYVS--------------------------------- 199 (702)
T ss_dssp HHHHHHHHHHHHCTTCEEEEEECCCT--THHHHHH---HTTCEEEEC---------------------------------
T ss_pred HHHHHHHHHHhcCcCceEEEECCCcC--CHHHHHH---HhCCCcccC---------------------------------
Confidence 333333333 2456688999973 2444333 222111000
Q ss_pred hhhhhcCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCcHHHH
Q 042857 983 KDAMQNIPPKTERMVPVELSSIQAEYYRAMLTKNYQILRNIGKGVAQQSMLNIVMQLRKVCNHPYLIPGTEPDSGSVEFL 1062 (1404)
Q Consensus 983 ~dV~~~LPpk~e~iV~V~LS~~Qk~~Y~~il~~n~~~L~~~~kg~~~~sllnilm~LRK~cnHP~L~~~~e~~~~~~e~l 1062 (1404)
..-|-.....+..... . ....+... +. .
T Consensus 200 ----~~r~~~l~~~~~~~~~-----~-------------~~~~~~~~-----------------~~----~--------- 227 (702)
T 2p6r_A 200 ----DWRPVPLVEGVLCEGT-----L-------------ELFDGAFS-----------------TS----R--------- 227 (702)
T ss_dssp ----CCCSSCEEEEEECSSE-----E-------------EEEETTEE-----------------EE----E---------
T ss_pred ----CCCCccceEEEeeCCe-----e-------------eccCcchh-----------------hh----h---------
Confidence 0001001110000000 0 00000000 00 0
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHcCCeEEEEecchhHHHHHHHHHhhhcC----------------------------Cc
Q 042857 1063 HEMRIKASAKLTLLHSMLKVLYKEGHRVLIFSQMTKLLDILEDYLNIEFG----------------------------PK 1114 (1404)
Q Consensus 1063 ~~~~i~~SgKl~~L~kLL~kl~~~G~KVLIFSq~~~~LDiLed~L~~~f~----------------------------g~ 1114 (1404)
.-.+. .++..+...+.++|||++.....+.+...|...+. +.
T Consensus 228 ------~~~~~----~~~~~~~~~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~ 297 (702)
T 2p6r_A 228 ------RVKFE----ELVEECVAENGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRK 297 (702)
T ss_dssp ------ECCHH----HHHHHHHHTTCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHT
T ss_pred ------hhhHH----HHHHHHHhcCCCEEEEcCCHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhccccccHHHHHHHhc
Confidence 00011 22223335788999999999888877777754211 12
Q ss_pred eEEEEeCCCCHHHHHHHHHHHhcCCCceEEEeecccccccccccCCCEEEE----Ec---CCCCHhHHHHHHHhhhccCC
Q 042857 1115 TYERVDGSVSVGDRQAAITRFNQDKSRFVFLLSTRSCGLGINLATADTVII----YD---SDFNPHADIQAMNRAHRIGQ 1187 (1404)
Q Consensus 1115 ~y~rLdGs~s~~eRq~~Id~Fn~~~s~~VfLLSTrAgG~GINL~~AdtVIi----~D---sdWNP~~d~QAigRahRiGQ 1187 (1404)
.+..+||+++..+|+.+.+.|.++... +|++|.+++.|||+++.++||. || .++++..+.|++|||+|.|+
T Consensus 298 ~v~~~h~~l~~~~R~~v~~~f~~g~~~--vlvaT~~l~~Gidip~~~~VI~~~~~yd~~~~~~s~~~~~Qr~GRaGR~g~ 375 (702)
T 2p6r_A 298 GAAFHHAGLLNGQRRVVEDAFRRGNIK--VVVATPTLAAGVNLPARRVIVRSLYRFDGYSKRIKVSEYKQMAGRAGRPGM 375 (702)
T ss_dssp TCCEECTTSCHHHHHHHHHHHHTTSCC--EEEECSTTTSSSCCCBSEEEECCSEEESSSEEECCHHHHHHHHTTBSCTTT
T ss_pred CeEEecCCCCHHHHHHHHHHHHCCCCe--EEEECcHHhccCCCCceEEEEcCceeeCCCCCcCCHHHHHHHhhhcCCCCC
Confidence 356699999999999999999876555 8899999999999999999998 77 68999999999999999999
Q ss_pred CCcEEEEEEeeCCCHHH
Q 042857 1188 SKRLLVYRLVVRASVEE 1204 (1404)
Q Consensus 1188 ~k~V~VYrLvt~~TvEE 1204 (1404)
.+.-.+|.|++...++.
T Consensus 376 ~~~G~~~~l~~~~~~~~ 392 (702)
T 2p6r_A 376 DERGEAIIIVGKRDREI 392 (702)
T ss_dssp CSCEEEEEECCGGGHHH
T ss_pred CCCceEEEEecCccHHH
Confidence 88889999999877554
No 39
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=99.86 E-value=4e-20 Score=236.33 Aligned_cols=323 Identities=19% Similarity=0.137 Sum_probs=213.6
Q ss_pred CCCHHHHHHHHHHHHhhccCCcEEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEeCCC-ChHHHHHHHHHHCC-CCc
Q 042857 755 ALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLS-TMPNWLAEFALWAP-NLN 832 (1404)
Q Consensus 755 ~L~pyQlegVnwL~~~~~~~~~~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP~S-ll~nW~rEf~kw~P-~l~ 832 (1404)
.|+|+|.+++..+ +..+.++|++.++|.|||+++...+....... .+.+|+++|.. +..+|.++|.+|.+ +++
T Consensus 23 ~l~~~Q~~~i~~~---~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~--~~~~l~i~P~raLa~q~~~~~~~l~~~g~~ 97 (720)
T 2zj8_A 23 SFYPPQAEALKSG---ILEGKNALISIPTASGKTLIAEIAMVHRILTQ--GGKAVYIVPLKALAEEKFQEFQDWEKIGLR 97 (720)
T ss_dssp BCCHHHHHHHTTT---GGGTCEEEEECCGGGCHHHHHHHHHHHHHHHH--CSEEEEECSSGGGHHHHHHHTGGGGGGTCC
T ss_pred CCCHHHHHHHHHH---hcCCCcEEEEcCCccHHHHHHHHHHHHHHHhC--CCEEEEEcCcHHHHHHHHHHHHHHHhcCCE
Confidence 6999999999762 23489999999999999999855554333222 35799999985 55899999977654 688
Q ss_pred EEEEecchhHHHHHHHhhhccCCCCccccccCCCCceEEEeeHHHHHhhhcc--ccCCCceEEEEccccccCC--CccHH
Q 042857 833 VVEYHGCAKARAIIRQYEWHASDPDNLNKKTSSYKFNVLLTTYEMILADSSH--LRGVPWEVLVVDEGHRLKN--SGSKL 908 (1404)
Q Consensus 833 Vvvy~G~~~~R~~ir~~E~~~~~~~~~~~~~~~~kfdVvITTYe~l~~d~~~--L~~i~w~lVIVDEAHrlKN--~~Sk~ 908 (1404)
+..++|+.... .......+|+|+|++.+...... ..--++++|||||+|.+.. .+..+
T Consensus 98 v~~~~G~~~~~------------------~~~~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~l~~~~r~~~~ 159 (720)
T 2zj8_A 98 VAMATGDYDSK------------------DEWLGKYDIIIATAEKFDSLLRHGSSWIKDVKILVADEIHLIGSRDRGATL 159 (720)
T ss_dssp EEEECSCSSCC------------------CGGGGGCSEEEECHHHHHHHHHHTCTTGGGEEEEEEETGGGGGCTTTHHHH
T ss_pred EEEecCCCCcc------------------ccccCCCCEEEECHHHHHHHHHcChhhhhcCCEEEEECCcccCCCcccHHH
Confidence 99988853210 00123678999999988653221 1112578999999999975 23334
Q ss_pred HHHHhhcc-cccEEEEeccCCCCChHHHHHHhhhhCCCCCCChhHHHHHhccccchHHHHHHHHhhhhhhhhhhHhhhhh
Q 042857 909 FSLLNSFS-FQHRVLLTGTPLQNNIGEMYNLLNFLQPASFPSLSSFEEKFNDLTTTQKVEELKKLVAPHMLRRLKKDAMQ 987 (1404)
Q Consensus 909 ~~~L~~l~-~~~rLLLTGTPlqNnl~EL~sLL~fL~P~~f~s~~~F~~~f~d~~~~~~i~~L~~lL~p~mLRR~K~dV~~ 987 (1404)
...+..+. ....++||||+- +..++.. |+....| . ..
T Consensus 160 ~~ll~~l~~~~~ii~lSATl~--n~~~~~~---~l~~~~~----------~---------------------------~~ 197 (720)
T 2zj8_A 160 EVILAHMLGKAQIIGLSATIG--NPEELAE---WLNAELI----------V---------------------------SD 197 (720)
T ss_dssp HHHHHHHBTTBEEEEEECCCS--CHHHHHH---HTTEEEE----------E---------------------------CC
T ss_pred HHHHHHhhcCCeEEEEcCCcC--CHHHHHH---HhCCccc----------C---------------------------CC
Confidence 44444554 456788999973 2333332 2211000 0 00
Q ss_pred cCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCcHHHHHHHHH
Q 042857 988 NIPPKTERMVPVELSSIQAEYYRAMLTKNYQILRNIGKGVAQQSMLNIVMQLRKVCNHPYLIPGTEPDSGSVEFLHEMRI 1067 (1404)
Q Consensus 988 ~LPpk~e~iV~V~LS~~Qk~~Y~~il~~n~~~L~~~~kg~~~~sllnilm~LRK~cnHP~L~~~~e~~~~~~e~l~~~~i 1067 (1404)
.-|-.....+..... . ....+.. +.
T Consensus 198 ~rp~~l~~~~~~~~~-----~-------------~~~~~~~-----------------~~-------------------- 222 (720)
T 2zj8_A 198 WRPVKLRRGVFYQGF-----V-------------TWEDGSI-----------------DR-------------------- 222 (720)
T ss_dssp CCSSEEEEEEEETTE-----E-------------EETTSCE-----------------EE--------------------
T ss_pred CCCCcceEEEEeCCe-----e-------------eccccch-----------------hh--------------------
Confidence 001111111110000 0 0000000 00
Q ss_pred hhhhHHHHHHHHHHHHHHcCCeEEEEecchhHHHHHHHHHhhhcC-------------------------------CceE
Q 042857 1068 KASAKLTLLHSMLKVLYKEGHRVLIFSQMTKLLDILEDYLNIEFG-------------------------------PKTY 1116 (1404)
Q Consensus 1068 ~~SgKl~~L~kLL~kl~~~G~KVLIFSq~~~~LDiLed~L~~~f~-------------------------------g~~y 1116 (1404)
...++. ++..+...++++|||+......+.+...|...+. ...+
T Consensus 223 -~~~~~~----~~~~~~~~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~v 297 (720)
T 2zj8_A 223 -FSSWEE----LVYDAIRKKKGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIRGGV 297 (720)
T ss_dssp -CSSTTH----HHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHHTTTE
T ss_pred -hhHHHH----HHHHHHhCCCCEEEEecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccchHHHHHHHhcCe
Confidence 001112 2222335688999999999888887777764311 1237
Q ss_pred EEEeCCCCHHHHHHHHHHHhcCCCceEEEeecccccccccccCCCEEEE----Ec----CCCCHhHHHHHHHhhhccCCC
Q 042857 1117 ERVDGSVSVGDRQAAITRFNQDKSRFVFLLSTRSCGLGINLATADTVII----YD----SDFNPHADIQAMNRAHRIGQS 1188 (1404)
Q Consensus 1117 ~rLdGs~s~~eRq~~Id~Fn~~~s~~VfLLSTrAgG~GINL~~AdtVIi----~D----sdWNP~~d~QAigRahRiGQ~ 1188 (1404)
..+||+++..+|+.+.+.|.++... +|++|.+++.|||+++.++||. || .++++..+.|++|||+|.|+.
T Consensus 298 ~~~h~~l~~~~R~~v~~~f~~g~~~--vlvaT~~l~~Gvdip~~~~VI~~~~~yd~~g~~~~s~~~~~Qr~GRaGR~g~~ 375 (720)
T 2zj8_A 298 AFHHAGLGRDERVLVEENFRKGIIK--AVVATPTLSAGINTPAFRVIIRDIWRYSDFGMERIPIIEVHQMLGRAGRPKYD 375 (720)
T ss_dssp EEECTTSCHHHHHHHHHHHHTTSSC--EEEECSTTGGGCCCCBSEEEECCSEECCSSSCEECCHHHHHHHHTTBCCTTTC
T ss_pred eeecCCCCHHHHHHHHHHHHCCCCe--EEEECcHhhccCCCCceEEEEcCCeeecCCCCccCCHHHHHHHHhhcCCCCCC
Confidence 8899999999999999999876555 8899999999999999999988 77 589999999999999999998
Q ss_pred CcEEEEEEeeCCCHHH
Q 042857 1189 KRLLVYRLVVRASVEE 1204 (1404)
Q Consensus 1189 k~V~VYrLvt~~TvEE 1204 (1404)
..-.+|.|++...++.
T Consensus 376 ~~G~~~~l~~~~~~~~ 391 (720)
T 2zj8_A 376 EVGEGIIVSTSDDPRE 391 (720)
T ss_dssp SEEEEEEECSSSCHHH
T ss_pred CCceEEEEecCccHHH
Confidence 8888999999888554
No 40
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=99.86 E-value=3.4e-20 Score=236.68 Aligned_cols=329 Identities=19% Similarity=0.170 Sum_probs=211.6
Q ss_pred CCCHHHHHHHHHHHHhhccCCcEEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEeCCC-ChHHHHHHHHHHCC-CCc
Q 042857 755 ALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLS-TMPNWLAEFALWAP-NLN 832 (1404)
Q Consensus 755 ~L~pyQlegVnwL~~~~~~~~~~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP~S-ll~nW~rEf~kw~P-~l~ 832 (1404)
.|+|+|.+++..+ +..+.++|++.++|.|||+++..++...... ..+.+|+++|.. +..+|.++|+.+.+ +++
T Consensus 30 ~l~~~Q~~~i~~~---~~~~~~~lv~apTGsGKT~~~~l~il~~~~~--~~~~il~i~P~r~La~q~~~~~~~~~~~g~~ 104 (715)
T 2va8_A 30 KLNPPQTEAVKKG---LLEGNRLLLTSPTGSGKTLIAEMGIISFLLK--NGGKAIYVTPLRALTNEKYLTFKDWELIGFK 104 (715)
T ss_dssp BCCHHHHHHHHTT---TTTTCCEEEECCTTSCHHHHHHHHHHHHHHH--SCSEEEEECSCHHHHHHHHHHHGGGGGGTCC
T ss_pred CCCHHHHHHHHHH---hcCCCcEEEEcCCCCcHHHHHHHHHHHHHHH--CCCeEEEEeCcHHHHHHHHHHHHHhhcCCCE
Confidence 6999999999763 2348999999999999999997666554332 245899999998 56899999976653 678
Q ss_pred EEEEecchhHHHHHHHhhhccCCCCccccccCCCCceEEEeeHHHHHhhhcc--ccCCCceEEEEccccccCCC--ccHH
Q 042857 833 VVEYHGCAKARAIIRQYEWHASDPDNLNKKTSSYKFNVLLTTYEMILADSSH--LRGVPWEVLVVDEGHRLKNS--GSKL 908 (1404)
Q Consensus 833 Vvvy~G~~~~R~~ir~~E~~~~~~~~~~~~~~~~kfdVvITTYe~l~~d~~~--L~~i~w~lVIVDEAHrlKN~--~Sk~ 908 (1404)
+..++|..... .......+|+|+|++.+...... ..--++++|||||+|.+.+. ...+
T Consensus 105 v~~~~G~~~~~------------------~~~~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~l~~~~~~~~l 166 (715)
T 2va8_A 105 VAMTSGDYDTD------------------DAWLKNYDIIITTYEKLDSLWRHRPEWLNEVNYFVLDELHYLNDPERGPVV 166 (715)
T ss_dssp EEECCSCSSSC------------------CGGGGGCSEEEECHHHHHHHHHHCCGGGGGEEEEEECSGGGGGCTTTHHHH
T ss_pred EEEEeCCCCCc------------------hhhcCCCCEEEEcHHHHHHHHhCChhHhhccCEEEEechhhcCCcccchHH
Confidence 88888753210 00112678999999988653211 10125689999999998642 2334
Q ss_pred HHHHhhcccccEEEEeccCCCCChHHHHHHhhhhCCCCCCChhHHHHHhccccchHHHHHHHHhhhhhhhhhhHhhhhhc
Q 042857 909 FSLLNSFSFQHRVLLTGTPLQNNIGEMYNLLNFLQPASFPSLSSFEEKFNDLTTTQKVEELKKLVAPHMLRRLKKDAMQN 988 (1404)
Q Consensus 909 ~~~L~~l~~~~rLLLTGTPlqNnl~EL~sLL~fL~P~~f~s~~~F~~~f~d~~~~~~i~~L~~lL~p~mLRR~K~dV~~~ 988 (1404)
...+..+...+.++|||||- |..++... +....+.. . .+|
T Consensus 167 ~~i~~~~~~~~ii~lSATl~--n~~~~~~~---l~~~~~~~------~----------------~r~------------- 206 (715)
T 2va8_A 167 ESVTIRAKRRNLLALSATIS--NYKQIAKW---LGAEPVAT------N----------------WRP------------- 206 (715)
T ss_dssp HHHHHHHHTSEEEEEESCCT--THHHHHHH---HTCEEEEC------C----------------CCS-------------
T ss_pred HHHHHhcccCcEEEEcCCCC--CHHHHHHH---hCCCccCC------C----------------CCC-------------
Confidence 44555566677899999983 23443322 22111000 0 000
Q ss_pred CCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCcHHHHHHHHHh
Q 042857 989 IPPKTERMVPVELSSIQAEYYRAMLTKNYQILRNIGKGVAQQSMLNIVMQLRKVCNHPYLIPGTEPDSGSVEFLHEMRIK 1068 (1404)
Q Consensus 989 LPpk~e~iV~V~LS~~Qk~~Y~~il~~n~~~L~~~~kg~~~~sllnilm~LRK~cnHP~L~~~~e~~~~~~e~l~~~~i~ 1068 (1404)
.| ....+....... .. ....+......... .
T Consensus 207 ~~-l~~~~~~~~~~~---------------------~~------------------~~~~~~~~~~~~~~---------~ 237 (715)
T 2va8_A 207 VP-LIEGVIYPERKK---------------------KE------------------YNVIFKDNTTKKVH---------G 237 (715)
T ss_dssp SC-EEEEEEEECSST---------------------TE------------------EEEEETTSCEEEEE---------S
T ss_pred CC-ceEEEEecCCcc---------------------cc------------------eeeecCcchhhhcc---------c
Confidence 01 011111000000 00 00000000000000 0
Q ss_pred hhhHHHHHHHHHHHHHHcCCeEEEEecchhHHHHHHHHHhhhcCC----------------------------------c
Q 042857 1069 ASAKLTLLHSMLKVLYKEGHRVLIFSQMTKLLDILEDYLNIEFGP----------------------------------K 1114 (1404)
Q Consensus 1069 ~SgKl~~L~kLL~kl~~~G~KVLIFSq~~~~LDiLed~L~~~f~g----------------------------------~ 1114 (1404)
...++.. +..+...+.++|||+......+.+...|...+.. .
T Consensus 238 ~~~~~~~----~~~~~~~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~ 313 (715)
T 2va8_A 238 DDAIIAY----TLDSLSKNGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKELLKSLISK 313 (715)
T ss_dssp SSHHHHH----HHHHHTTTCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHHHHHHHHTT
T ss_pred chHHHHH----HHHHHhcCCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccccccHHHHHHHhc
Confidence 0112222 2233357889999999999988888888754221 2
Q ss_pred eEEEEeCCCCHHHHHHHHHHHhcCCCceEEEeecccccccccccCCCEEEE----Ec-------CCCCHhHHHHHHHhhh
Q 042857 1115 TYERVDGSVSVGDRQAAITRFNQDKSRFVFLLSTRSCGLGINLATADTVII----YD-------SDFNPHADIQAMNRAH 1183 (1404)
Q Consensus 1115 ~y~rLdGs~s~~eRq~~Id~Fn~~~s~~VfLLSTrAgG~GINL~~AdtVIi----~D-------sdWNP~~d~QAigRah 1183 (1404)
.+..+||+++..+|+.+.+.|.++... +|++|.+++.|||+++.++||. || .++++..+.|++|||+
T Consensus 314 ~v~~~h~~l~~~~r~~v~~~f~~g~~~--vlvaT~~l~~Gidip~~~~VI~~~~~~d~~~~~~~~~~s~~~~~Qr~GRaG 391 (715)
T 2va8_A 314 GVAYHHAGLSKALRDLIEEGFRQRKIK--VIVATPTLAAGVNLPARTVIIGDIYRFNKKIAGYYDEIPIMEYKQMSGRAG 391 (715)
T ss_dssp TEEEECTTSCHHHHHHHHHHHHTTCSC--EEEECGGGGGSSCCCBSEEEECCC--------------CHHHHHHHHTTBC
T ss_pred CEEEECCCCCHHHHHHHHHHHHcCCCe--EEEEChHHhcccCCCceEEEEeCCeeccccCCCCCCcCCHHHHHHHhhhcC
Confidence 478899999999999999999876555 8899999999999999999998 99 7999999999999999
Q ss_pred ccCCCCcEEEEEEeeCCC
Q 042857 1184 RIGQSKRLLVYRLVVRAS 1201 (1404)
Q Consensus 1184 RiGQ~k~V~VYrLvt~~T 1201 (1404)
|.|+...-.+|+|++...
T Consensus 392 R~g~~~~G~~~~l~~~~~ 409 (715)
T 2va8_A 392 RPGFDQIGESIVVVRDKE 409 (715)
T ss_dssp CTTTCSCEEEEEECSCGG
T ss_pred CCCCCCCceEEEEeCCch
Confidence 999988888999988765
No 41
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=99.86 E-value=1.7e-20 Score=248.63 Aligned_cols=369 Identities=17% Similarity=0.123 Sum_probs=218.5
Q ss_pred CCCCHHHHHHHHHHHHhhccCCcEEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEeCCCC-hHHHHHHHHHHCCCCc
Q 042857 754 GALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLST-MPNWLAEFALWAPNLN 832 (1404)
Q Consensus 754 ~~L~pyQlegVnwL~~~~~~~~~~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP~Sl-l~nW~rEf~kw~P~l~ 832 (1404)
..|+|+|.+++..+ ..+.++|++.++|.|||++++.++...+. ..+.+||++|... ..||.++|..++. .
T Consensus 183 f~ltp~Q~~AI~~i----~~g~dvLV~ApTGSGKTlva~l~i~~~l~---~g~rvlvl~PtraLa~Q~~~~l~~~~~--~ 253 (1108)
T 3l9o_A 183 FTLDPFQDTAISCI----DRGESVLVSAHTSAGKTVVAEYAIAQSLK---NKQRVIYTSPIKALSNQKYRELLAEFG--D 253 (1108)
T ss_dssp SCCCHHHHHHHHHH----TTTCCEEEECCSSSHHHHHHHHHHHHHHH---TTCEEEEEESSHHHHHHHHHHHHHHTS--S
T ss_pred CCCCHHHHHHHHHH----HcCCCEEEECCCCCChHHHHHHHHHHHHh---cCCeEEEEcCcHHHHHHHHHHHHHHhC--C
Confidence 47999999999876 34899999999999999998877766553 3457999999965 4899999999986 5
Q ss_pred EEEEecchhHHHHHHHhhhccCCCCccccccCCCCceEEEeeHHHHHhhhcc--ccCCCceEEEEccccccCCCc--cHH
Q 042857 833 VVEYHGCAKARAIIRQYEWHASDPDNLNKKTSSYKFNVLLTTYEMILADSSH--LRGVPWEVLVVDEGHRLKNSG--SKL 908 (1404)
Q Consensus 833 Vvvy~G~~~~R~~ir~~E~~~~~~~~~~~~~~~~kfdVvITTYe~l~~d~~~--L~~i~w~lVIVDEAHrlKN~~--Sk~ 908 (1404)
+..++|... .....+|+|+|++.+...... ..--++++|||||||++.... ...
T Consensus 254 VglltGd~~----------------------~~~~~~IlV~Tpe~L~~~L~~~~~~l~~l~lVVIDEaH~l~d~~rg~~~ 311 (1108)
T 3l9o_A 254 VGLMTGDIT----------------------INPDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRDKERGVVW 311 (1108)
T ss_dssp EEEECSSCB----------------------CCCSCSEEEEEHHHHHHHHHHCSSHHHHEEEEEEETGGGTTSHHHHHHH
T ss_pred ccEEeCccc----------------------cCCCCCEEEeChHHHHHHHHcCccccccCCEEEEhhhhhccccchHHHH
Confidence 666777432 113578999999988764211 111247899999999997532 233
Q ss_pred HHHHhhccc-ccEEEEeccCCCCChHHHHHHhhhhCCCCCCChhHHHHHhccccchHHHHHHHHhhhhhhhhhhHhhhhh
Q 042857 909 FSLLNSFSF-QHRVLLTGTPLQNNIGEMYNLLNFLQPASFPSLSSFEEKFNDLTTTQKVEELKKLVAPHMLRRLKKDAMQ 987 (1404)
Q Consensus 909 ~~~L~~l~~-~~rLLLTGTPlqNnl~EL~sLL~fL~P~~f~s~~~F~~~f~d~~~~~~i~~L~~lL~p~mLRR~K~dV~~ 987 (1404)
...+..+.. ...|+|||| +.|. .++...+..+...... .... -.+|.-+.. .+..
T Consensus 312 e~ii~~l~~~~qvl~lSAT-ipn~-~e~a~~l~~~~~~~~~----------vi~~---------~~rp~pl~~---~~~~ 367 (1108)
T 3l9o_A 312 EETIILLPDKVRYVFLSAT-IPNA-MEFAEWICKIHSQPCH----------IVYT---------NFRPTPLQH---YLFP 367 (1108)
T ss_dssp HHHHHHSCTTSEEEEEECS-CSSC-HHHHHHHHHHTCSCEE----------EEEE---------CCCSSCEEE---EEEE
T ss_pred HHHHHhcCCCceEEEEcCC-CCCH-HHHHHHHHhhcCCCeE----------EEec---------CCCcccceE---EEee
Confidence 444555543 456889999 3443 3333333222111000 0000 000000000 0000
Q ss_pred cCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCcHHHHHHHHH
Q 042857 988 NIPPKTERMVPVELSSIQAEYYRAMLTKNYQILRNIGKGVAQQSMLNIVMQLRKVCNHPYLIPGTEPDSGSVEFLHEMRI 1067 (1404)
Q Consensus 988 ~LPpk~e~iV~V~LS~~Qk~~Y~~il~~n~~~L~~~~kg~~~~sllnilm~LRK~cnHP~L~~~~e~~~~~~e~l~~~~i 1067 (1404)
........+.-.........|...+....... ... |...... +... ....
T Consensus 368 -~~~~~~~~~vd~~~~~~~~~~~~~~~~l~~~~---~~~-------------------~~~~~~~----~~~~---~~~~ 417 (1108)
T 3l9o_A 368 -AHGDGIYLVVDEKSTFREENFQKAMASISNQI---GDD-------------------PNSTDSR----GKKG---QTYK 417 (1108)
T ss_dssp -TTSSCCEEEEETTTEECHHHHHHHHTTC---------------------------------------------------
T ss_pred -cCCcceeeeeccccchhhhhHHHHHHHHHhhh---ccc-------------------ccccccc----cccc---cccc
Confidence 00000000000111111111111111000000 000 0000000 0000 0000
Q ss_pred hhhhH---HHHHHHHHHHHHHc-CCeEEEEecchhHHHHHHHHHhhhcCCc-----------------------------
Q 042857 1068 KASAK---LTLLHSMLKVLYKE-GHRVLIFSQMTKLLDILEDYLNIEFGPK----------------------------- 1114 (1404)
Q Consensus 1068 ~~SgK---l~~L~kLL~kl~~~-G~KVLIFSq~~~~LDiLed~L~~~f~g~----------------------------- 1114 (1404)
....+ ...+..++..+... +.++|||+.....++.+..+|... ++
T Consensus 418 ~~~~~~~~~~~l~~li~~l~~~~~~~vIVF~~sr~~~e~la~~L~~~--~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~ 495 (1108)
T 3l9o_A 418 GGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKL--DFNSDDEKEALTKIFNNAIALLPETDRELPQ 495 (1108)
T ss_dssp -------CHHHHHHHHHHHHHTTCCCEEEEESCHHHHHHHHHHTCSH--HHHCC----CHHHHGGGSCTHHHHHTTCCHH
T ss_pred cccccccchhHHHHHHHHHHhcCCCCEEEEeCcHHHHHHHHHHHHhc--cCCCHHHHHHHHHHHHHHHhhcchhhhhhhh
Confidence 00000 22334445554444 469999999999999888887542 11
Q ss_pred ----------eEEEEeCCCCHHHHHHHHHHHhcCCCceEEEeecccccccccccCCCEEEEEcCCCCH--------hHHH
Q 042857 1115 ----------TYERVDGSVSVGDRQAAITRFNQDKSRFVFLLSTRSCGLGINLATADTVIIYDSDFNP--------HADI 1176 (1404)
Q Consensus 1115 ----------~y~rLdGs~s~~eRq~~Id~Fn~~~s~~VfLLSTrAgG~GINL~~AdtVIi~DsdWNP--------~~d~ 1176 (1404)
.+..+||++++.+|..+++.|.++... +|++|.++++|||++++++||.++.+|++ ..|.
T Consensus 496 ~~~l~~~l~~gV~~~Hg~l~~~~R~~v~~~F~~G~ik--VLVAT~vla~GIDiP~v~~VI~~~~~~d~~~~r~iS~~eyi 573 (1108)
T 3l9o_A 496 IKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLK--VLFATETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYI 573 (1108)
T ss_dssp HHHHTHHHHHTEEEECSCSCHHHHHHHHHHHHHTCCC--EEEEESCCCSCCCC--CEEEESCSEEESSSCEEECCHHHHH
T ss_pred HHHHHHhhhcCeeeecCCCCHHHHHHHHHHHhCCCCe--EEEECcHHhcCCCCCCceEEEecCcccCccccccCCHHHHH
Confidence 167899999999999999999977666 89999999999999999999988876655 4599
Q ss_pred HHHHhhhccCCCCcEEEEEEeeCCCHHHHHHHHHH
Q 042857 1177 QAMNRAHRIGQSKRLLVYRLVVRASVEERILQLAK 1211 (1404)
Q Consensus 1177 QAigRahRiGQ~k~V~VYrLvt~~TvEE~Ilq~a~ 1211 (1404)
|+.||++|.|+.....+|.++.....+..+..++.
T Consensus 574 Qr~GRAGR~G~d~~G~~ill~~~~~~~~~~~~l~~ 608 (1108)
T 3l9o_A 574 QMSGRAGRRGLDDRGIVIMMIDEKMEPQVAKGMVK 608 (1108)
T ss_dssp HHHHHSCCSSSCSSEEEEEEECCCCCHHHHHHHHH
T ss_pred HhhcccCCCCCCCceEEEEEecCCcCHHHHHHHhc
Confidence 99999999999888999999988765555555544
No 42
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=99.85 E-value=1e-19 Score=239.13 Aligned_cols=393 Identities=17% Similarity=0.090 Sum_probs=226.0
Q ss_pred hhhccCCccCCCCCCCHHHHHHHHHHHHhhccCCcEEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEeCCC-ChHHH
Q 042857 742 VALTEQPEELKGGALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLS-TMPNW 820 (1404)
Q Consensus 742 ~~l~~qP~~l~g~~L~pyQlegVnwL~~~~~~~~~~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP~S-ll~nW 820 (1404)
..+...+...-+.+|+|+|.+++..+.. +.++|++.++|.|||++++..+..+.. ..+.+||++|.. +..||
T Consensus 26 ~~l~~~~~~~~~f~l~~~Q~~aI~~il~----g~~vlv~apTGsGKTlv~~~~i~~~~~---~g~~vlvl~PtraLa~Q~ 98 (997)
T 4a4z_A 26 DELIPNPARSWPFELDTFQKEAVYHLEQ----GDSVFVAAHTSAGKTVVAEYAIAMAHR---NMTKTIYTSPIKALSNQK 98 (997)
T ss_dssp HHHCSSCSCCCSSCCCHHHHHHHHHHHT----TCEEEEECCTTSCSHHHHHHHHHHHHH---TTCEEEEEESCGGGHHHH
T ss_pred hhhhHhHHHhCCCCCCHHHHHHHHHHHc----CCCEEEEECCCCcHHHHHHHHHHHHHh---cCCeEEEEeCCHHHHHHH
Confidence 3333334334456899999999987754 789999999999999977666655432 335699999986 55899
Q ss_pred HHHHHHHCCCCcEEEEecchhHHHHHHHhhhccCCCCccccccCCCCceEEEeeHHHHHhhhc--cccCCCceEEEEccc
Q 042857 821 LAEFALWAPNLNVVEYHGCAKARAIIRQYEWHASDPDNLNKKTSSYKFNVLLTTYEMILADSS--HLRGVPWEVLVVDEG 898 (1404)
Q Consensus 821 ~rEf~kw~P~l~Vvvy~G~~~~R~~ir~~E~~~~~~~~~~~~~~~~kfdVvITTYe~l~~d~~--~L~~i~w~lVIVDEA 898 (1404)
.++|..+++++++..++|... .....+|+|+|++.+..... .+...++++||||||
T Consensus 99 ~~~l~~~~~~~~v~~l~G~~~----------------------~~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~lvViDEa 156 (997)
T 4a4z_A 99 FRDFKETFDDVNIGLITGDVQ----------------------INPDANCLIMTTEILRSMLYRGADLIRDVEFVIFDEV 156 (997)
T ss_dssp HHHHHTTC--CCEEEECSSCE----------------------ECTTSSEEEEEHHHHHHHHHHTCSGGGGEEEEEECCT
T ss_pred HHHHHHHcCCCeEEEEeCCCc----------------------cCCCCCEEEECHHHHHHHHHhCchhhcCCCEEEEECc
Confidence 999999998899999988542 11346899999999875431 112235789999999
Q ss_pred cccCCC--ccHHHHHHhhccc-ccEEEEeccCCCCChHHHHHHhhhhCCCCCCChhHHHHHhccccchHHHHHHHHhhhh
Q 042857 899 HRLKNS--GSKLFSLLNSFSF-QHRVLLTGTPLQNNIGEMYNLLNFLQPASFPSLSSFEEKFNDLTTTQKVEELKKLVAP 975 (1404)
Q Consensus 899 HrlKN~--~Sk~~~~L~~l~~-~~rLLLTGTPlqNnl~EL~sLL~fL~P~~f~s~~~F~~~f~d~~~~~~i~~L~~lL~p 975 (1404)
|++.+. .......+..+.. ...++|||||- +..+ |.+++..... -..
T Consensus 157 H~l~d~~~g~~~e~ii~~l~~~v~iIlLSAT~~--n~~e------------------f~~~l~~~~~----------~~~ 206 (997)
T 4a4z_A 157 HYVNDQDRGVVWEEVIIMLPQHVKFILLSATVP--NTYE------------------FANWIGRTKQ----------KNI 206 (997)
T ss_dssp TCCCTTCTTCCHHHHHHHSCTTCEEEEEECCCT--THHH------------------HHHHHHHHHT----------CCE
T ss_pred ccccccchHHHHHHHHHhcccCCCEEEEcCCCC--ChHH------------------HHHHHhcccC----------Cce
Confidence 998763 3445556666654 45688999972 2222 3333321000 000
Q ss_pred hhhhhhHhhhhhcCCCceEEEEE--------ec-CCHHHHHHHHHHHHHHHHHHHhhccchhhHHHHH------------
Q 042857 976 HMLRRLKKDAMQNIPPKTERMVP--------VE-LSSIQAEYYRAMLTKNYQILRNIGKGVAQQSMLN------------ 1034 (1404)
Q Consensus 976 ~mLRR~K~dV~~~LPpk~e~iV~--------V~-LS~~Qk~~Y~~il~~n~~~L~~~~kg~~~~slln------------ 1034 (1404)
+++. ....|...++.+. +. ........|.... ..+...........+..
T Consensus 207 ~vi~------~~~r~~pl~~~v~~~~~~~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (997)
T 4a4z_A 207 YVIS------TPKRPVPLEINIWAKKELIPVINQNSEFLEANFRKHK----EILNGESAKGAPSKTDNGRGGSTARGGRG 276 (997)
T ss_dssp EEEE------CSSCSSCEEEEEEETTEEEEEECTTCCBCHHHHHHHH----HHHC-------------------------
T ss_pred EEEe------cCCCCccceEEEecCCcchhcccchhhhhHHHHHHHH----HHhhccccccccccccccccccccccccc
Confidence 0000 0011111111111 11 1101111121111 11100000000000000
Q ss_pred -HHHHHHH-------HhCCCCCCCCCCCCCCcH-HHHHHHHHhhhhHHHHHHHHHHHHHHcCCeEEEEecchhHHHHHHH
Q 042857 1035 -IVMQLRK-------VCNHPYLIPGTEPDSGSV-EFLHEMRIKASAKLTLLHSMLKVLYKEGHRVLIFSQMTKLLDILED 1105 (1404)
Q Consensus 1035 -ilm~LRK-------~cnHP~L~~~~e~~~~~~-e~l~~~~i~~SgKl~~L~kLL~kl~~~G~KVLIFSq~~~~LDiLed 1105 (1404)
...+... --..+............. ............++..|..+|.. ..+.++|||+.....++.+..
T Consensus 277 ~~~~rg~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~l~~--~~~~~~IVF~~sr~~~e~la~ 354 (997)
T 4a4z_A 277 GSNTRDGRGGRGNSTRGGANRGGSRGAGAIGSNKRKFFTQDGPSKKTWPEIVNYLRK--RELLPMVVFVFSKKRCEEYAD 354 (997)
T ss_dssp ----------------------------------------CCCCTTHHHHHHHHHHH--TTCCSEEEECSCHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccchhHHHHHHHHHHh--CCCCCEEEEECCHHHHHHHHH
Confidence 0000000 000000000000000000 00000000112334444444443 235799999999999999888
Q ss_pred HHhhhcC-------------------------------------CceEEEEeCCCCHHHHHHHHHHHhcCCCceEEEeec
Q 042857 1106 YLNIEFG-------------------------------------PKTYERVDGSVSVGDRQAAITRFNQDKSRFVFLLST 1148 (1404)
Q Consensus 1106 ~L~~~f~-------------------------------------g~~y~rLdGs~s~~eRq~~Id~Fn~~~s~~VfLLST 1148 (1404)
+|..... ...+..+||+++..+|+.+++.|..+... +|++|
T Consensus 355 ~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~H~gl~~~~R~~v~~~F~~G~~k--VLvAT 432 (997)
T 4a4z_A 355 WLEGINFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLERGIAVHHGGLLPIVKELIEILFSKGFIK--VLFAT 432 (997)
T ss_dssp TTTTCCCCCHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTCCS--EEEEC
T ss_pred HHhcCCCCCHHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHhhcCeeeecCCCCHHHHHHHHHHHHCCCCc--EEEEc
Confidence 8864200 11467899999999999999999977655 89999
Q ss_pred ccccccccccCCCEEEEEcCCC---------CHhHHHHHHHhhhccCCCCcEEEEEEeeCCCHHHHHHH
Q 042857 1149 RSCGLGINLATADTVIIYDSDF---------NPHADIQAMNRAHRIGQSKRLLVYRLVVRASVEERILQ 1208 (1404)
Q Consensus 1149 rAgG~GINL~~AdtVIi~DsdW---------NP~~d~QAigRahRiGQ~k~V~VYrLvt~~TvEE~Ilq 1208 (1404)
.++++|||+++ .+||+++.++ ++..+.|+.|||+|.|+...-.+|.+...+..++.++.
T Consensus 433 ~~~a~GIDiP~-~~VVi~~~~k~dg~~~~~~s~~~y~Qr~GRAGR~G~~~~G~vi~l~~~~~~~~~~~~ 500 (997)
T 4a4z_A 433 ETFAMGLNLPT-RTVIFSSIRKHDGNGLRELTPGEFTQMAGRAGRRGLDSTGTVIVMAYNSPLSIATFK 500 (997)
T ss_dssp THHHHSCCCCC-SEEEESCSEEEETTEEEECCHHHHHHHHGGGCCTTTCSSEEEEEECCSSCCCHHHHH
T ss_pred hHhhCCCCCCC-ceEEEeccccccCccCCCCCHHHHhHHhcccccCCCCcceEEEEecCCCcchHHHHH
Confidence 99999999999 7777766554 99999999999999999888888888876655555544
No 43
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=99.83 E-value=3.7e-19 Score=235.79 Aligned_cols=317 Identities=17% Similarity=0.193 Sum_probs=216.4
Q ss_pred CCCCCHHHHHHHHHHHHhhccCCcEEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEeCCCCh-HHHHHHHHHHC-CC
Q 042857 753 GGALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLSTM-PNWLAEFALWA-PN 830 (1404)
Q Consensus 753 g~~L~pyQlegVnwL~~~~~~~~~~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP~Sll-~nW~rEf~kw~-P~ 830 (1404)
|.+|+|+|.+++..++. +.++|+...+|.|||+.++..+..+. .....+|||+|...| .|+.+.|..+. .+
T Consensus 76 gf~pt~iQ~~ai~~il~----g~dvlv~ApTGSGKTl~~l~~il~~~---~~~~~~Lil~PtreLa~Q~~~~l~~l~~~~ 148 (1104)
T 4ddu_A 76 GKDLTGYQRLWAKRIVQ----GKSFTMVAPTGVGKTTFGMMTALWLA---RKGKKSALVFPTVTLVKQTLERLQKLADEK 148 (1104)
T ss_dssp SSCCCHHHHHHHHHHTT----TCCEEECCSTTCCHHHHHHHHHHHHH---TTTCCEEEEESSHHHHHHHHHHHHTTSCTT
T ss_pred CCCCCHHHHHHHHHHHc----CCCEEEEeCCCCcHHHHHHHHHHHHH---hcCCeEEEEechHHHHHHHHHHHHHhhCCC
Confidence 34799999999987755 78999999999999996666655544 334569999999755 89999999976 46
Q ss_pred CcEEEEecchhH---HHHHHHhhhccCCCCccccccCCCCceEEEeeHHHHHhhhccccCCCceEEEEccccccCCCc--
Q 042857 831 LNVVEYHGCAKA---RAIIRQYEWHASDPDNLNKKTSSYKFNVLLTTYEMILADSSHLRGVPWEVLVVDEGHRLKNSG-- 905 (1404)
Q Consensus 831 l~Vvvy~G~~~~---R~~ir~~E~~~~~~~~~~~~~~~~kfdVvITTYe~l~~d~~~L~~i~w~lVIVDEAHrlKN~~-- 905 (1404)
+++..++|+... ....... ....++|+|+|++.+......+...++++|||||||.+-...
T Consensus 149 i~v~~l~Gg~~~~er~~~~~~l--------------~~g~~~IlV~Tp~rL~~~l~~l~~~~l~~lViDEaH~l~~~~r~ 214 (1104)
T 4ddu_A 149 VKIFGFYSSMKKEEKEKFEKSF--------------EEDDYHILVFSTQFVSKNREKLSQKRFDFVFVDDVDAVLKASRN 214 (1104)
T ss_dssp SCEEEECTTCCTTHHHHHHHHH--------------HTSCCSEEEEEHHHHHHSHHHHHTSCCSEEEESCHHHHTTSSHH
T ss_pred CeEEEEeCCCCHHHHHHHHHHH--------------hCCCCCEEEECHHHHHHHHHhhcccCcCEEEEeCCCcccccccc
Confidence 799999997654 2222221 113478999999999776555656688999999999864321
Q ss_pred -----------cH-HHHHHhhcc------------cccEEEEeccCCCCChHHHHHHhhhhCCCCCCChhHHHHHhcccc
Q 042857 906 -----------SK-LFSLLNSFS------------FQHRVLLTGTPLQNNIGEMYNLLNFLQPASFPSLSSFEEKFNDLT 961 (1404)
Q Consensus 906 -----------Sk-~~~~L~~l~------------~~~rLLLTGTPlqNnl~EL~sLL~fL~P~~f~s~~~F~~~f~d~~ 961 (1404)
.. +..++..+. ....+++||||....+.+.+. -.++...
T Consensus 215 ~Dr~L~~~gf~~~~i~~il~~l~~~~~~~~~~~~~~~q~ll~SAT~~p~~~~~~~~-~~~l~i~---------------- 277 (1104)
T 4ddu_A 215 IDTLLMMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLF-RDLLNFT---------------- 277 (1104)
T ss_dssp HHHHHHTSSCCHHHHHHHHHHHHHTSCCCCCSSCCCCEEEEECBSSCCCSSTTHHH-HHHTCCC----------------
T ss_pred chhhhHhcCCCHHHHHHHHHhcccchhhhhhccCCCceEEEEcCCCCcHHHHHHHh-hcceeEE----------------
Confidence 12 334444332 345688999986665442110 0000000
Q ss_pred chHHHHHHHHhhhhhhhhhhHhhhhhcCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHH
Q 042857 962 TTQKVEELKKLVAPHMLRRLKKDAMQNIPPKTERMVPVELSSIQAEYYRAMLTKNYQILRNIGKGVAQQSMLNIVMQLRK 1041 (1404)
Q Consensus 962 ~~~~i~~L~~lL~p~mLRR~K~dV~~~LPpk~e~iV~V~LS~~Qk~~Y~~il~~n~~~L~~~~kg~~~~sllnilm~LRK 1041 (1404)
+.+ .....+......+.+
T Consensus 278 ----------------v~~----~~~~~~~i~~~~~~~------------------------------------------ 295 (1104)
T 4ddu_A 278 ----------------VGR----LVSVARNITHVRISS------------------------------------------ 295 (1104)
T ss_dssp ----------------CCB----CCCCCCCEEEEEESC------------------------------------------
T ss_pred ----------------ecc----CCCCcCCceeEEEec------------------------------------------
Confidence 000 000011111111111
Q ss_pred HhCCCCCCCCCCCCCCcHHHHHHHHHhhhhHHHHHHHHHHHHHHcCCeEEEEecchhHHHHHHHHHhhhcCCceEE-EEe
Q 042857 1042 VCNHPYLIPGTEPDSGSVEFLHEMRIKASAKLTLLHSMLKVLYKEGHRVLIFSQMTKLLDILEDYLNIEFGPKTYE-RVD 1120 (1404)
Q Consensus 1042 ~cnHP~L~~~~e~~~~~~e~l~~~~i~~SgKl~~L~kLL~kl~~~G~KVLIFSq~~~~LDiLed~L~~~f~g~~y~-rLd 1120 (1404)
.|...|..+|.. .+.++|||++.....+.|..+|... ++.+. .+|
T Consensus 296 -----------------------------~k~~~L~~ll~~---~~~~~LVF~~s~~~a~~l~~~L~~~--g~~~~~~lh 341 (1104)
T 4ddu_A 296 -----------------------------RSKEKLVELLEI---FRDGILIFAQTEEEGKELYEYLKRF--KFNVGETWS 341 (1104)
T ss_dssp -----------------------------CCHHHHHHHHHH---HCSSEEEEESSSHHHHHHHHHHHHT--TCCEEESSS
T ss_pred -----------------------------CHHHHHHHHHHh---cCCCEEEEECcHHHHHHHHHHHHhC--CCCeeeEec
Confidence 011223333333 3579999999999999999999876 78887 888
Q ss_pred CCCCHHHHHHHHHHHhcCCCceEEEee----cccccccccccC-CCEEEEEcCCC-------------------------
Q 042857 1121 GSVSVGDRQAAITRFNQDKSRFVFLLS----TRSCGLGINLAT-ADTVIIYDSDF------------------------- 1170 (1404)
Q Consensus 1121 Gs~s~~eRq~~Id~Fn~~~s~~VfLLS----TrAgG~GINL~~-AdtVIi~DsdW------------------------- 1170 (1404)
| +|++ ++.|.++... +|++ |.++++|||++. ++.||+||+|-
T Consensus 342 g-----~rr~-l~~F~~G~~~--VLVatas~TdvlarGIDip~~V~~VI~~d~P~~~~Sle~~~~~~~~~~~l~~l~~~~ 413 (1104)
T 4ddu_A 342 E-----FEKN-FEDFKVGKIN--ILIGVQAYYGKLTRGVDLPERIKYVIFWGTPSMRFSLELDKAPRFVLARVLKEMGLI 413 (1104)
T ss_dssp S-----HHHH-HHHHHHTSCS--EEEEETTTHHHHCCSCCCTTTCCEEEEESCCEEEEECSSSSCCHHHHHHHHHHHSSC
T ss_pred C-----cHHH-HHHHHCCCCC--EEEEecCCCCeeEecCcCCCCCCEEEEECCCCCCCCcccccCHHHHHHHHHHHHHHH
Confidence 8 3556 9999987766 7788 999999999999 99999999997
Q ss_pred -----------------------------------------------CHhHHHHHHHhhhccCCC---CcEEEEEEeeCC
Q 042857 1171 -----------------------------------------------NPHADIQAMNRAHRIGQS---KRLLVYRLVVRA 1200 (1404)
Q Consensus 1171 -----------------------------------------------NP~~d~QAigRahRiGQ~---k~V~VYrLvt~~ 1200 (1404)
++..|+||.||++|+|.. +-+.| -|+
T Consensus 414 ~~~~~~~~~~~~e~~~~~l~~~~~~~~i~~~~~~l~~~~~~~~~~~pd~~tYihr~GRtgR~~~gg~~~Glsi-~~~--- 489 (1104)
T 4ddu_A 414 KAQENPDVEELRKIAKEHLTQKEFVEKVKEMFRGVVVKDEDLELIIPDVYTYIQASGRSSRILNGVLVKGVSV-IFE--- 489 (1104)
T ss_dssp SSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHCCSSEEETTTTEEEEECHHHHHHHHHTTCCEETTEECCEEEE-EEC---
T ss_pred HHHHHHHHHHHHHHHHHHhccHHHHHHHhhccceEEecCCeeEEEecChhhhhcccCchhcccCCCcccceEE-EEE---
Confidence 778999999999998753 33333 222
Q ss_pred CHHHHHHHHHHHHHhh
Q 042857 1201 SVEERILQLAKKKLML 1216 (1404)
Q Consensus 1201 TvEE~Ilq~a~~Kl~L 1216 (1404)
-|+.++...++++..
T Consensus 490 -~d~~~~~~l~~~~~~ 504 (1104)
T 4ddu_A 490 -EDEEIFESLKTRLLL 504 (1104)
T ss_dssp -CCHHHHHHHHHHHHH
T ss_pred -ecHHHHHHHHHHHhh
Confidence 267788888777753
No 44
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=99.82 E-value=5e-19 Score=231.98 Aligned_cols=350 Identities=14% Similarity=0.133 Sum_probs=202.5
Q ss_pred CCCHHHHHHHHHHHHhhcc----------CCcEEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEeCC-CChHHHHHH
Q 042857 755 ALFPHQLEALNWLRKCWHK----------SKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPL-STMPNWLAE 823 (1404)
Q Consensus 755 ~L~pyQlegVnwL~~~~~~----------~~~~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP~-Sll~nW~rE 823 (1404)
.|+|||.+|+++++..+.. +.++|+.+.+|+|||++++.++ .++.......++|||||. .+..||..+
T Consensus 271 ~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~~~l~-~ll~~~~~~~rvLvlvpr~eL~~Q~~~~ 349 (1038)
T 2w00_A 271 VMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTSFKAA-RLATELDFIDKVFFVVDRKDLDYQTMKE 349 (1038)
T ss_dssp ECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHHHHHH-HHHTTCTTCCEEEEEECGGGCCHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHHHHHH-HHHHhcCCCceEEEEeCcHHHHHHHHHH
Confidence 5999999999999875532 3689999999999999986665 444333334589999995 566999999
Q ss_pred HHHHCCCCcEEEEecchhHHHHHHHhhhccCCCCccccccCCCCceEEEeeHHHHHhhhcc---c-cCCCceEEEEcccc
Q 042857 824 FALWAPNLNVVEYHGCAKARAIIRQYEWHASDPDNLNKKTSSYKFNVLLTTYEMILADSSH---L-RGVPWEVLVVDEGH 899 (1404)
Q Consensus 824 f~kw~P~l~Vvvy~G~~~~R~~ir~~E~~~~~~~~~~~~~~~~kfdVvITTYe~l~~d~~~---L-~~i~w~lVIVDEAH 899 (1404)
|..|.+.. + .|............ ....+|+|+|++.+...... + ..-.+.+|||||||
T Consensus 350 f~~f~~~~---v-~~~~s~~~l~~~L~--------------~~~~~IiVtTiqkl~~~l~~~~~~~~~~~~~lvIiDEAH 411 (1038)
T 2w00_A 350 YQRFSPDS---V-NGSENTAGLKRNLD--------------KDDNKIIVTTIQKLNNLMKAESDLPVYNQQVVFIFDECH 411 (1038)
T ss_dssp HHTTSTTC---S-SSSCCCHHHHHHHH--------------CSSCCEEEEEHHHHHHHHHHCCCCGGGGSCEEEEEESCC
T ss_pred HHHhcccc---c-ccccCHHHHHHHhc--------------CCCCCEEEEEHHHHHHHHhcccchhccccccEEEEEccc
Confidence 99998652 1 12111111111110 12468999999999864221 1 11267899999999
Q ss_pred ccCCCccHHHHHHhhcccccEEEEeccCCCCChHHHHHHhhhhCCCCCCChhHHHHHhccccchHHHHHHHHhhhhhhhh
Q 042857 900 RLKNSGSKLFSLLNSFSFQHRVLLTGTPLQNNIGEMYNLLNFLQPASFPSLSSFEEKFNDLTTTQKVEELKKLVAPHMLR 979 (1404)
Q Consensus 900 rlKN~~Sk~~~~L~~l~~~~rLLLTGTPlqNnl~EL~sLL~fL~P~~f~s~~~F~~~f~d~~~~~~i~~L~~lL~p~mLR 979 (1404)
|+... ......+..+....+|+|||||....-.. ++ ......|+.... .+-++
T Consensus 412 rs~~~-~~~~~I~~~~p~a~~lgfTATP~~~~~~~-------------~~-~~t~~~FG~~i~------------~Y~l~ 464 (1038)
T 2w00_A 412 RSQFG-EAQKNLKKKFKRYYQFGFTGTPIFPENAL-------------GS-ETTASVFGRELH------------SYVIT 464 (1038)
T ss_dssp TTHHH-HHHHHHHHHCSSEEEEEEESSCCCSTTCT-------------TS-CCHHHHHCSEEE------------EECHH
T ss_pred hhcch-HHHHHHHHhCCcccEEEEeCCccccccch-------------hh-hHHHHHhCCeeE------------eecHH
Confidence 98531 11223345566778899999997532100 00 001111221100 00011
Q ss_pred hhHhhhhhcCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCcH
Q 042857 980 RLKKDAMQNIPPKTERMVPVELSSIQAEYYRAMLTKNYQILRNIGKGVAQQSMLNIVMQLRKVCNHPYLIPGTEPDSGSV 1059 (1404)
Q Consensus 980 R~K~dV~~~LPpk~e~iV~V~LS~~Qk~~Y~~il~~n~~~L~~~~kg~~~~sllnilm~LRK~cnHP~L~~~~e~~~~~~ 1059 (1404)
....+- .-+|.. +.+....+. |..+ . .. . ... .+..+ .+-.++
T Consensus 465 ~AI~dg-~l~p~~---v~y~~v~~~----~~~~--------~-~e-~-d~~-------~~~~i-~~~~~l---------- 507 (1038)
T 2w00_A 465 DAIRDE-KVLKFK---VDYNDVRPQ----FKSL--------E-TE-T-DEK-------KLSAA-ENQQAF---------- 507 (1038)
T ss_dssp HHHHHT-SSCCEE---EEECCCCGG----GHHH--------H-TC-C-CHH-------HHHHT-CSTTTT----------
T ss_pred HHHhCC-CcCCeE---EEEEeccch----hhhc--------c-cc-c-cHH-------HHHHH-HHHHHh----------
Confidence 111110 012211 111111110 1100 0 00 0 000 00000 000000
Q ss_pred HHHHHHHHhhhhHHHHH-HHHHHHHHH---------cCCeEEEEecchhHHHHHHHHHhhhc----------CCceE-EE
Q 042857 1060 EFLHEMRIKASAKLTLL-HSMLKVLYK---------EGHRVLIFSQMTKLLDILEDYLNIEF----------GPKTY-ER 1118 (1404)
Q Consensus 1060 e~l~~~~i~~SgKl~~L-~kLL~kl~~---------~G~KVLIFSq~~~~LDiLed~L~~~f----------~g~~y-~r 1118 (1404)
....++..+ ..++..+.. .|.+++|||..+..+..+...|.... .++.+ ..
T Consensus 508 --------~~~~ri~~I~~~Il~~~~~~~~~~~~~~~g~kamVf~~S~~~A~~~~~~l~~~~~~~~~~~~~~~~~k~avv 579 (1038)
T 2w00_A 508 --------LHPMRIQEITQYILNNFRQKTHRTFPGSKGFNAMLAVSSVDAAKAYYATFKRLQEEAANKSATYKPLRIATI 579 (1038)
T ss_dssp --------TCHHHHHHHHHHHHHHHHHHTTCSSSSCCCCEEEEEESSHHHHHHHHHHHHHHHHHHTTTSSSCCCCCEEEE
T ss_pred --------cCHHHHHHHHHHHHHHHHHhhhhhcccCCCCcEEEEECCHHHHHHHHHHHHhhhhhhcccccccccCcEEEE
Confidence 011122222 233343322 35689999999999888888886542 12344 34
Q ss_pred EeCC----------C----------CH-----------------------------HHHHHHHHHHhcCCCceEEEeecc
Q 042857 1119 VDGS----------V----------SV-----------------------------GDRQAAITRFNQDKSRFVFLLSTR 1149 (1404)
Q Consensus 1119 LdGs----------~----------s~-----------------------------~eRq~~Id~Fn~~~s~~VfLLSTr 1149 (1404)
++|. + +. ..|..++++|.++.-. +||++.
T Consensus 580 ~s~~~~~~~~~~G~~~~e~~~~~~~~~~~r~~l~~~I~dyn~~f~~~~~~~~~~~~~~R~~i~~~Fk~g~i~--ILIvvd 657 (1038)
T 2w00_A 580 FSFAANEEQNAIGEISDETFDTSAMDSSAKEFLDAAIREYNSHFKTNFSTDSNGFQNYYRDLAQRVKNQDID--LLIVVG 657 (1038)
T ss_dssp CCCCC------CCCCCCCCSCGGGSCHHHHHHHHHHHHHHHHHHTCCCCSSHHHHHHHHHHHHHHHHTTSSS--EEEESS
T ss_pred EeCCCccccccccccccccccccccchhHHHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHcCCCe--EEEEcc
Confidence 5542 2 21 1488889999876544 899999
Q ss_pred cccccccccCCCEEEEEcCCCCHhHHHHHHHhhhccCCC-C-cEEEEEEee
Q 042857 1150 SCGLGINLATADTVIIYDSDFNPHADIQAMNRAHRIGQS-K-RLLVYRLVV 1198 (1404)
Q Consensus 1150 AgG~GINL~~AdtVIi~DsdWNP~~d~QAigRahRiGQ~-k-~V~VYrLvt 1198 (1404)
...+|+|.+.+ .++++|.+..++.++||+||+.|.+.. | ...|+.|+.
T Consensus 658 ~lltGfDiP~l-~tlylDkpl~~~~liQaIGRtnR~~~~~K~~G~IVdf~~ 707 (1038)
T 2w00_A 658 MFLTGFDAPTL-NTLFVDKNLRYHGLMQAFSRTNRIYDATKTFGNIVTFRD 707 (1038)
T ss_dssp TTSSSCCCTTE-EEEEEESCCCHHHHHHHHHTTCCCCCTTCCSEEEEESSC
T ss_pred hHHhCcCcccc-cEEEEccCCCccceeehhhccCcCCCCCCCcEEEEEccc
Confidence 99999999999 678899999999999999999999863 3 356666653
No 45
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=99.79 E-value=1.4e-18 Score=229.95 Aligned_cols=319 Identities=15% Similarity=0.164 Sum_probs=203.9
Q ss_pred CCCCCHHHHHHHHHHHHhhccCCcEEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEeCCCCh-HHHHHHHHHHCCC-
Q 042857 753 GGALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLSTM-PNWLAEFALWAPN- 830 (1404)
Q Consensus 753 g~~L~pyQlegVnwL~~~~~~~~~~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP~Sll-~nW~rEf~kw~P~- 830 (1404)
|..+ |+|.+++..++. +.++|+..++|.|||+.++.++..+.. ....+|||+|...| .|+.+.|..+++.
T Consensus 55 g~~p-~iQ~~ai~~il~----g~dvlv~apTGSGKTl~~lp~l~~~~~---~~~~~lil~PtreLa~Q~~~~l~~l~~~~ 126 (1054)
T 1gku_B 55 GEPR-AIQKMWAKRILR----KESFAATAPTGVGKTSFGLAMSLFLAL---KGKRCYVIFPTSLLVIQAAETIRKYAEKA 126 (1054)
T ss_dssp CSCC-HHHHHHHHHHHT----TCCEECCCCBTSCSHHHHHHHHHHHHT---TSCCEEEEESCHHHHHHHHHHHHHHHTTT
T ss_pred CCCH-HHHHHHHHHHHh----CCCEEEEcCCCCCHHHHHHHHHHHHhh---cCCeEEEEeccHHHHHHHHHHHHHHHhhc
Confidence 3347 999999987764 789999999999999855544444432 34579999999755 8899999998764
Q ss_pred -C----cEEEEecchhHHHHHHHhhhccCCCCccccccCCCCceEEEeeHHHHHhhhccccCCCceEEEEccccccCCCc
Q 042857 831 -L----NVVEYHGCAKARAIIRQYEWHASDPDNLNKKTSSYKFNVLLTTYEMILADSSHLRGVPWEVLVVDEGHRLKNSG 905 (1404)
Q Consensus 831 -l----~Vvvy~G~~~~R~~ir~~E~~~~~~~~~~~~~~~~kfdVvITTYe~l~~d~~~L~~i~w~lVIVDEAHrlKN~~ 905 (1404)
+ .+..++|+.......+..+. . ...+|+|+|++.+......|. .+++|||||||++.+..
T Consensus 127 ~i~~~~~v~~~~Gg~~~~~~~~~~~~-----------l--~~~~IlV~TP~~L~~~l~~L~--~l~~lViDEah~~l~~~ 191 (1054)
T 1gku_B 127 GVGTENLIGYYHGRIPKREKENFMQN-----------L--RNFKIVITTTQFLSKHYRELG--HFDFIFVDDVDAILKAS 191 (1054)
T ss_dssp CCSGGGSEEECCSSCCSHHHHHHHHS-----------G--GGCSEEEEEHHHHHHCSTTSC--CCSEEEESCHHHHHTST
T ss_pred CCCccceEEEEeCCCChhhHHHHHhh-----------c--cCCCEEEEcHHHHHHHHHHhc--cCCEEEEeChhhhhhcc
Confidence 4 77888887544332211110 0 127899999999998665554 67899999999988765
Q ss_pred cHHHHHHhhcc------------cccEEEEeccCCCCChHHHHHHhhhhCCCCCCChhHHHHHhccccchHHHHHHHHhh
Q 042857 906 SKLFSLLNSFS------------FQHRVLLTGTPLQNNIGEMYNLLNFLQPASFPSLSSFEEKFNDLTTTQKVEELKKLV 973 (1404)
Q Consensus 906 Sk~~~~L~~l~------------~~~rLLLTGTPlqNnl~EL~sLL~fL~P~~f~s~~~F~~~f~d~~~~~~i~~L~~lL 973 (1404)
..+...+..+. ....+++|+|+-.. .++. ..|...+..
T Consensus 192 ~~~~~i~~~lgf~~~~~~~~~~~~~q~~l~SAT~t~~--~~~~--------------~~~~~~~~~-------------- 241 (1054)
T 1gku_B 192 KNVDKLLHLLGFHYDLKTKSWVGEARGCLMVSTATAK--KGKK--------------AELFRQLLN-------------- 241 (1054)
T ss_dssp HHHHHHHHHTTEEEETTTTEEEECCSSEEEECCCCSC--CCTT--------------HHHHHHHHC--------------
T ss_pred ccHHHHHHHhCcchhhhhhhcccCCceEEEEecCCCc--hhHH--------------HHHhhcceE--------------
Confidence 55555555442 23457888886433 1100 000000000
Q ss_pred hhhhhhhhHhhhhhcCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHhCCCCCCCCCC
Q 042857 974 APHMLRRLKKDAMQNIPPKTERMVPVELSSIQAEYYRAMLTKNYQILRNIGKGVAQQSMLNIVMQLRKVCNHPYLIPGTE 1053 (1404)
Q Consensus 974 ~p~mLRR~K~dV~~~LPpk~e~iV~V~LS~~Qk~~Y~~il~~n~~~L~~~~kg~~~~sllnilm~LRK~cnHP~L~~~~e 1053 (1404)
+.+.. ....++...+ ..+.
T Consensus 242 --i~v~~-----~~~~~~~i~~-~~~~----------------------------------------------------- 260 (1054)
T 1gku_B 242 --FDIGS-----SRITVRNVED-VAVN----------------------------------------------------- 260 (1054)
T ss_dssp --CCCSC-----CEECCCCEEE-EEES-----------------------------------------------------
T ss_pred --EEccC-----cccCcCCceE-EEec-----------------------------------------------------
Confidence 00000 0000011111 1110
Q ss_pred CCCCcHHHHHHHHHhhhhHHHHHHHHHHHHHHcCCeEEEEecchhHHHHHHHHHhhhcCCceEEEEeCCCCHHHHHHHHH
Q 042857 1054 PDSGSVEFLHEMRIKASAKLTLLHSMLKVLYKEGHRVLIFSQMTKLLDILEDYLNIEFGPKTYERVDGSVSVGDRQAAIT 1133 (1404)
Q Consensus 1054 ~~~~~~e~l~~~~i~~SgKl~~L~kLL~kl~~~G~KVLIFSq~~~~LDiLed~L~~~f~g~~y~rLdGs~s~~eRq~~Id 1133 (1404)
..|...|..++.. .+.++|||+......+.|..+|... +.+..+||.+ ..+++
T Consensus 261 ----------------~~k~~~L~~ll~~---~~~~~LVF~~t~~~a~~l~~~L~~~---~~v~~lhg~~-----~~~l~ 313 (1054)
T 1gku_B 261 ----------------DESISTLSSILEK---LGTGGIIYARTGEEAEEIYESLKNK---FRIGIVTATK-----KGDYE 313 (1054)
T ss_dssp ----------------CCCTTTTHHHHTT---SCSCEEEEESSHHHHHHHHHTTTTS---SCEEECTTSS-----SHHHH
T ss_pred ----------------hhHHHHHHHHHhh---cCCCEEEEEcCHHHHHHHHHHHhhc---cCeeEEeccH-----HHHHH
Confidence 0011122223322 2678999999999999999999864 6788999987 47889
Q ss_pred HHhcCCCceEEEee----cccccccccccCC-CEEEEEcCC---------------------------------------
Q 042857 1134 RFNQDKSRFVFLLS----TRSCGLGINLATA-DTVIIYDSD--------------------------------------- 1169 (1404)
Q Consensus 1134 ~Fn~~~s~~VfLLS----TrAgG~GINL~~A-dtVIi~Dsd--------------------------------------- 1169 (1404)
.|..+... +|++ |.++++|||++.+ ++||+||.+
T Consensus 314 ~F~~G~~~--VLVaTas~Tdv~~rGIDip~VI~~VI~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (1054)
T 1gku_B 314 KFVEGEID--HLIGTAHYYGTLVRGLDLPERIRFAVFVGCPSFRVTIEDIDSLSPQMVKLLAYLYRNVDEIERLLPAVER 391 (1054)
T ss_dssp HHHHTSCS--EEEEECC------CCSCCTTTCCEEEEESCCEEEEECSCGGGSCHHHHHHHHTTTSCHHHHHTTCTTTSS
T ss_pred HHHcCCCc--EEEEecCCCCeeEeccccCCcccEEEEeCCCcccccccccccChHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 99876655 6677 8999999999995 999999999
Q ss_pred --------------------------------CCHhHHHHHHHhhhccCCCCcEEEEEEeeCCCHHHHHHHHHHHHHhh
Q 042857 1170 --------------------------------FNPHADIQAMNRAHRIGQSKRLLVYRLVVRASVEERILQLAKKKLML 1216 (1404)
Q Consensus 1170 --------------------------------WNP~~d~QAigRahRiGQ~k~V~VYrLvt~~TvEE~Ilq~a~~Kl~L 1216 (1404)
.++..|+|++||++|.|....-..+-|+..+ |+.++....+++..
T Consensus 392 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~yiQr~GRagR~g~~g~~~g~~~~~~~--d~~~~~~l~~~l~~ 468 (1054)
T 1gku_B 392 HIDEVREILKKVMGKERPQAKDVVVREGEVIFPDLRTYIQGSGRTSRLFAGGLTKGASFLLED--DSELLSAFIERAKL 468 (1054)
T ss_dssp CHHHHHHHHHHHHTTSCCSCSSSEEETTEEEEECHHHHHHHHHTTCCEETTEECCEEEEEECS--CHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhccccccccceeEeecceecCcHHHHhhhhchhhhccCCCCceEEEEEEec--CHHHHHHHHHHHhh
Confidence 7899999999999998876431223333333 45566666665543
No 46
>2h1e_A Chromo domain protein 1; CHD1, tandem chromodomains, three-stranded ANT B-sheet, hydrolase; 2.20A {Saccharomyces cerevisiae} PDB: 2dy7_A 2dy8_A
Probab=99.72 E-value=5e-19 Score=187.71 Aligned_cols=104 Identities=28% Similarity=0.542 Sum_probs=81.0
Q ss_pred ceeEEEEEEecCccccccccCCHHHHHH-HHHHHHHHHHHhhCcc---------ccc--------------chhhhccch
Q 042857 609 AVSYEFLVKWVGKSNIHNSWIPESQLKV-LAKRKLENYKAKYGTT---------VIN--------------ICDERWKQP 664 (1404)
Q Consensus 609 ~~~~eylVKw~~~Sy~h~~Wv~e~~l~~-~~~~~l~~~~~k~~~~---------~~~--------------~~~~e~~~~ 664 (1404)
.+..||||||+|+||+||+|+|+++|.. .+.++|.||.+++... ... ...++|+.|
T Consensus 44 ~~~~EYlVKWKg~Sy~HnTWe~ee~L~~~~glkKl~nf~kk~~~~e~~~~~~~~~~~ed~E~~~~~~e~~~~~~~e~~~V 123 (177)
T 2h1e_A 44 KENYEFLIKWTDESHLHNTWETYESIGQVRGLKRLDNYCKQFIIEDQQVRLDPYVTAEDIEIMDMERERRLDEFEEFHVP 123 (177)
T ss_dssp HHHEEEEEEETTSCGGGCEEECHHHHCSCTTHHHHHHHHHHHTHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHHHHTTSE
T ss_pred CCceEEEEEECCCccccCeecCHHHHhhchHHHHHHHHHHHhhhhhhhhhcccCCChHHHHHhhhhhhhhhhccccccee
Confidence 4568999999999999999999999984 3345789998876421 000 123789999
Q ss_pred hhhhhhcc----CCCCcceeeeccCCCCCCcccccCCCchHHHhhHHHHHHHH
Q 042857 665 QRVISLRS----SKDGTREAFVKWTGLPYDECTWEKLDEPALEKYSHLTDLFV 713 (1404)
Q Consensus 665 eRii~~r~----~~~~~~eylVKW~gL~Y~~~TWE~~~~~~~~~~~~li~~~~ 713 (1404)
+|||+.|. ..++..+|||||+||||++||||..+. ....++.+|+.|.
T Consensus 124 ErIi~~r~~~~~~~~~~~~YLVKWkgl~y~e~TWE~~~~-~~~~~~~~I~~y~ 175 (177)
T 2h1e_A 124 ERIIDSQRASLEDGTSQLQYLVKWRRLNYDEATWENATD-IVKLAPEQVKHFQ 175 (177)
T ss_dssp EEEEEEEEEECTTSCEEEEEEEEETTSCSTTCEEEEHHH-HHHHCHHHHHHHT
T ss_pred EEEEEEeeecccCCCCcEEEEEEeCCCCcccccccChHH-hhhhHHHHHHHHH
Confidence 99999986 456789999999999999999996443 2234778888775
No 47
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=99.71 E-value=1.8e-17 Score=188.05 Aligned_cols=163 Identities=12% Similarity=0.124 Sum_probs=122.6
Q ss_pred CCCCHHHHHHHHHHHHhhccCCcEEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEeCC-CChHHHHHHHHHHCC--C
Q 042857 754 GALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPL-STMPNWLAEFALWAP--N 830 (1404)
Q Consensus 754 ~~L~pyQlegVnwL~~~~~~~~~~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP~-Sll~nW~rEf~kw~P--~ 830 (1404)
.+|+|||.+++.+++. +.++||+++||+|||+++++++..+... ..+++|||||. +++.||.++|.+|.. .
T Consensus 112 ~~l~~~Q~~ai~~~l~----~~~~ll~~~tGsGKT~~~~~~~~~~~~~--~~~~~lil~Pt~~L~~q~~~~l~~~~~~~~ 185 (282)
T 1rif_A 112 IEPHWYQKDAVFEGLV----NRRRILNLPTSAGRSLIQALLARYYLEN--YEGKILIIVPTTALTTQMADDFVDYRLFSH 185 (282)
T ss_dssp CCCCHHHHHHHHHHHH----HSEEEECCCTTSCHHHHHHHHHHHHHHH--CSSEEEEECSSHHHHHHHHHHHHHHTSCCG
T ss_pred cCccHHHHHHHHHHHh----cCCeEEEcCCCCCcHHHHHHHHHHHHHc--CCCeEEEEECCHHHHHHHHHHHHHhccccc
Confidence 4899999999998877 3678999999999999998887776542 34589999998 566899999999963 3
Q ss_pred CcEEEEecchhHHHHHHHhhhccCCCCccccccCCCCceEEEeeHHHHHhhhccccCCCceEEEEccccccCCCccHHHH
Q 042857 831 LNVVEYHGCAKARAIIRQYEWHASDPDNLNKKTSSYKFNVLLTTYEMILADSSHLRGVPWEVLVVDEGHRLKNSGSKLFS 910 (1404)
Q Consensus 831 l~Vvvy~G~~~~R~~ir~~E~~~~~~~~~~~~~~~~kfdVvITTYe~l~~d~~~L~~i~w~lVIVDEAHrlKN~~Sk~~~ 910 (1404)
..+..++|+..... ......+|+|+||+.+......+ ...|++|||||||++.+ .....
T Consensus 186 ~~~~~~~~~~~~~~------------------~~~~~~~I~v~T~~~l~~~~~~~-~~~~~~vIiDEaH~~~~--~~~~~ 244 (282)
T 1rif_A 186 AMIKKIGGGASKDD------------------KYKNDAPVVVGTWQTVVKQPKEW-FSQFGMMMNDECHLATG--KSISS 244 (282)
T ss_dssp GGEEECSTTCSSTT------------------CCCTTCSEEEECHHHHTTSCGGG-GGGEEEEEEETGGGCCH--HHHHH
T ss_pred ceEEEEeCCCcchh------------------hhccCCcEEEEchHHHHhhHHHH-HhhCCEEEEECCccCCc--ccHHH
Confidence 45665555432110 11246789999999998764322 23679999999999985 35556
Q ss_pred HHhhc-ccccEEEEeccCCCCChHHHHHHhhhhCC
Q 042857 911 LLNSF-SFQHRVLLTGTPLQNNIGEMYNLLNFLQP 944 (1404)
Q Consensus 911 ~L~~l-~~~~rLLLTGTPlqNnl~EL~sLL~fL~P 944 (1404)
.+..+ ...++|+|||||. |...+++.+..++.|
T Consensus 245 il~~~~~~~~~l~lSATp~-~~~~~~~~l~~l~g~ 278 (282)
T 1rif_A 245 IISGLNNCMFKFGLSGSLR-DGKANIMQYVGMFGE 278 (282)
T ss_dssp HTTTCTTCCEEEEECSSCC-TTSTTHHHHHHHHCE
T ss_pred HHHHhhcCCeEEEEeCCCC-CcchHHHHHHHhcCC
Confidence 66776 5778899999995 556778887777765
No 48
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=99.70 E-value=1.9e-16 Score=190.76 Aligned_cols=100 Identities=17% Similarity=0.185 Sum_probs=85.8
Q ss_pred cCCeEEEEecchhHHHHHHHHHhhhcCCceEEEEeCCCCHHHHHHHHHHHhcCCCceEEEeecccccccccccCCCE---
Q 042857 1086 EGHRVLIFSQMTKLLDILEDYLNIEFGPKTYERVDGSVSVGDRQAAITRFNQDKSRFVFLLSTRSCGLGINLATADT--- 1162 (1404)
Q Consensus 1086 ~G~KVLIFSq~~~~LDiLed~L~~~f~g~~y~rLdGs~s~~eRq~~Id~Fn~~~s~~VfLLSTrAgG~GINL~~Adt--- 1162 (1404)
.+.++|||++.....+.+...|... ++.+..+||. +|+++++.|.++... +|++|.++++|||++ +++
T Consensus 170 ~~~~~lVF~~~~~~~~~l~~~L~~~--~~~v~~lhg~----~r~~~~~~f~~g~~~--vLVaT~v~e~GiDip-~~~VI~ 240 (431)
T 2v6i_A 170 FDGRTVWFVHSIKQGAEIGTCLQKA--GKKVLYLNRK----TFESEYPKCKSEKWD--FVITTDISEMGANFK-ADRVID 240 (431)
T ss_dssp CSSCEEEECSSHHHHHHHHHHHHHT--TCCEEEESTT----THHHHTTHHHHSCCS--EEEECGGGGTSCCCC-CSEEEE
T ss_pred CCCCEEEEeCCHHHHHHHHHHHHHc--CCeEEEeCCc----cHHHHHHhhcCCCCe--EEEECchHHcCcccC-CcEEEe
Confidence 4668999999999999999999876 7889999997 688999999887655 899999999999998 555
Q ss_pred --------------EEEEcCCCCHhHHHHHHHhhhccCCCC-cEEEE
Q 042857 1163 --------------VIIYDSDFNPHADIQAMNRAHRIGQSK-RLLVY 1194 (1404)
Q Consensus 1163 --------------VIi~DsdWNP~~d~QAigRahRiGQ~k-~V~VY 1194 (1404)
||+++.+.++..+.|+.||++|.|... .+.+|
T Consensus 241 ~g~~~~~v~d~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~~~~~~~~ 287 (431)
T 2v6i_A 241 PRKTIKPILLDGRVSMQGPIAITPASAAQRRGRIGRNPEKLGDIYAY 287 (431)
T ss_dssp CCEEEEEEEETTEEEEEEEEECCHHHHHHHHTTSSCCTTCCCCEEEE
T ss_pred cCccccceecccceeecccccCCHHHHHHhhhccCCCCCCCCeEEEE
Confidence 577889999999999999999999543 44443
No 49
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=99.69 E-value=1.2e-16 Score=202.21 Aligned_cols=117 Identities=14% Similarity=0.131 Sum_probs=100.9
Q ss_pred hhhHHHHHHHHHHHHHHcCCeEEEEecchhHHHHHHHHHhhhcCCceEEEEeCCCCHHHHHHHHHHHhcCCCceEEEeec
Q 042857 1069 ASAKLTLLHSMLKVLYKEGHRVLIFSQMTKLLDILEDYLNIEFGPKTYERVDGSVSVGDRQAAITRFNQDKSRFVFLLST 1148 (1404)
Q Consensus 1069 ~SgKl~~L~kLL~kl~~~G~KVLIFSq~~~~LDiLed~L~~~f~g~~y~rLdGs~s~~eRq~~Id~Fn~~~s~~VfLLST 1148 (1404)
...|+.+|..+|......|.+||||+......+.|...|... |+.+..|+|.+...+|.-+..+|+. . .+||+|
T Consensus 414 ~~~K~~al~~~i~~~~~~~~pvLVft~s~~~se~Ls~~L~~~--gi~~~vLhg~~~~rEr~ii~~ag~~--g--~VlIAT 487 (844)
T 1tf5_A 414 MEGKFKAVAEDVAQRYMTGQPVLVGTVAVETSELISKLLKNK--GIPHQVLNAKNHEREAQIIEEAGQK--G--AVTIAT 487 (844)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHHHHHHTT--TCCCEEECSSCHHHHHHHHTTTTST--T--CEEEEE
T ss_pred HHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHC--CCCEEEeeCCccHHHHHHHHHcCCC--C--eEEEeC
Confidence 357899999999888788999999999999999999999976 8999999999877666544444432 2 279999
Q ss_pred cccccccccc--------CCCEEEEEcCCCCHhHHHHHHHhhhccCCCCcE
Q 042857 1149 RSCGLGINLA--------TADTVIIYDSDFNPHADIQAMNRAHRIGQSKRL 1191 (1404)
Q Consensus 1149 rAgG~GINL~--------~AdtVIi~DsdWNP~~d~QAigRahRiGQ~k~V 1191 (1404)
..+|+|+|+. ...+||.||.+-++..|.|++||++|.|.....
T Consensus 488 dmAgRG~DI~l~~~V~~~ggl~VIn~d~p~s~r~y~hr~GRTGRqG~~G~s 538 (844)
T 1tf5_A 488 NMAGRGTDIKLGEGVKELGGLAVVGTERHESRRIDNQLRGRSGRQGDPGIT 538 (844)
T ss_dssp TTSSTTCCCCCCTTSGGGTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEE
T ss_pred CccccCcCccccchhhhcCCcEEEEecCCCCHHHHHhhcCccccCCCCCeE
Confidence 9999999998 678999999999999999999999999986554
No 50
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=99.69 E-value=1.8e-16 Score=191.57 Aligned_cols=102 Identities=16% Similarity=0.180 Sum_probs=80.7
Q ss_pred HcCCeEEEEecchhHHHHHHHHHhhhcCCceEEEEeCCCCHHHHHHHHHHHhcCCCceEEEeecccccccccccCCCEEE
Q 042857 1085 KEGHRVLIFSQMTKLLDILEDYLNIEFGPKTYERVDGSVSVGDRQAAITRFNQDKSRFVFLLSTRSCGLGINLATADTVI 1164 (1404)
Q Consensus 1085 ~~G~KVLIFSq~~~~LDiLed~L~~~f~g~~y~rLdGs~s~~eRq~~Id~Fn~~~s~~VfLLSTrAgG~GINL~~AdtVI 1164 (1404)
+.+.++|||++.....+.+...|... ++.+..+|| .+|+++++.|.++... +|++|.++++|||++ +++||
T Consensus 175 ~~~~~~lVF~~s~~~a~~l~~~L~~~--~~~v~~lhg----~~R~~~~~~F~~g~~~--vLVaT~v~e~GiDip-v~~VI 245 (440)
T 1yks_A 175 ADKRPTAWFLPSIRAANVMAASLRKA--GKSVVVLNR----KTFEREYPTIKQKKPD--FILATDIAEMGANLC-VERVL 245 (440)
T ss_dssp HCCSCEEEECSCHHHHHHHHHHHHHT--TCCEEECCS----SSCC--------CCCS--EEEESSSTTCCTTCC-CSEEE
T ss_pred hcCCCEEEEeCCHHHHHHHHHHHHHc--CCCEEEecc----hhHHHHHhhhcCCCce--EEEECChhheeeccC-ceEEE
Confidence 35789999999999999999999876 788999999 4688999999877655 899999999999999 99998
Q ss_pred E-------------------EcCCCCHhHHHHHHHhhhccC-CCCcEEEEEEe
Q 042857 1165 I-------------------YDSDFNPHADIQAMNRAHRIG-QSKRLLVYRLV 1197 (1404)
Q Consensus 1165 i-------------------~DsdWNP~~d~QAigRahRiG-Q~k~V~VYrLv 1197 (1404)
+ ||.+.++..+.|+.||++|.| +... +|.|+
T Consensus 246 ~~g~~~~pv~~~~~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~~g~--~~~l~ 296 (440)
T 1yks_A 246 DCRTAFKPVLVDEGRKVAIKGPLRISASSAAQRRGRIGRNPNRDGD--SYYYS 296 (440)
T ss_dssp ECCEEEEEEEETTTTEEEEEEEEECCHHHHHHHHTTSSCCTTCCCE--EEEEC
T ss_pred eCCccceeeecccccceeeccccccCHHHHHHhccccCCCCCCCce--EEEEe
Confidence 5 899999999999999999985 4433 34444
No 51
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=99.68 E-value=7.8e-17 Score=195.28 Aligned_cols=93 Identities=15% Similarity=0.123 Sum_probs=83.7
Q ss_pred cCCeEEEEecchhHHHHHHHHHhhhcCCceEEEEeCCCCHHHHHHHHHHHhcCCCceEEEeecccccccccccCCCEEEE
Q 042857 1086 EGHRVLIFSQMTKLLDILEDYLNIEFGPKTYERVDGSVSVGDRQAAITRFNQDKSRFVFLLSTRSCGLGINLATADTVII 1165 (1404)
Q Consensus 1086 ~G~KVLIFSq~~~~LDiLed~L~~~f~g~~y~rLdGs~s~~eRq~~Id~Fn~~~s~~VfLLSTrAgG~GINL~~AdtVIi 1165 (1404)
.+.++|||++.....+.|..+|... ++.+..++|.+ ++++++.|.++... +|++|.++++|||++. +.||.
T Consensus 187 ~~~~~lVF~~s~~~a~~l~~~L~~~--g~~~~~lh~~~----~~~~~~~f~~g~~~--vLVaT~v~~~GiDip~-~~VI~ 257 (451)
T 2jlq_A 187 YQGKTVWFVPSIKAGNDIANCLRKS--GKRVIQLSRKT----FDTEYPKTKLTDWD--FVVTTDISEMGANFRA-GRVID 257 (451)
T ss_dssp CCSCEEEECSSHHHHHHHHHHHHTT--TCCEEEECTTT----HHHHGGGGGSSCCS--EEEECGGGGSSCCCCC-SEEEE
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHHc--CCeEEECCHHH----HHHHHHhhccCCce--EEEECCHHHhCcCCCC-CEEEE
Confidence 4679999999999999999999876 78889999965 46789999876555 8999999999999999 99999
Q ss_pred Ec--------------------CCCCHhHHHHHHHhhhccCC
Q 042857 1166 YD--------------------SDFNPHADIQAMNRAHRIGQ 1187 (1404)
Q Consensus 1166 ~D--------------------sdWNP~~d~QAigRahRiGQ 1187 (1404)
|| .+.++..++|++||++|.|.
T Consensus 258 ~~~~~~~~~d~~~~~~l~~~~~~p~s~~~y~Qr~GRaGR~g~ 299 (451)
T 2jlq_A 258 PRRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPA 299 (451)
T ss_dssp CCEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTT
T ss_pred CCCcccccccccccceeeecccccCCHHHHHHhccccCCCCC
Confidence 88 88999999999999999997
No 52
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=99.68 E-value=3.1e-16 Score=197.88 Aligned_cols=117 Identities=13% Similarity=0.118 Sum_probs=102.6
Q ss_pred hhhHHHHHHHHHHHHHHcCCeEEEEecchhHHHHHHHHHhhhcCCceEEEEeCCCCHHHHHHHHHHHhcCCCceEEEeec
Q 042857 1069 ASAKLTLLHSMLKVLYKEGHRVLIFSQMTKLLDILEDYLNIEFGPKTYERVDGSVSVGDRQAAITRFNQDKSRFVFLLST 1148 (1404)
Q Consensus 1069 ~SgKl~~L~kLL~kl~~~G~KVLIFSq~~~~LDiLed~L~~~f~g~~y~rLdGs~s~~eRq~~Id~Fn~~~s~~VfLLST 1148 (1404)
...|+.+|.+++......|..||||+......+.|...|... |+.+..|+|.....+|.-+.++|+.+ .++|+|
T Consensus 423 ~~~K~~al~~~i~~~~~~gqpvLVft~sie~se~Ls~~L~~~--gi~~~vLnak~~~rEa~iia~agr~G----~VtIAT 496 (853)
T 2fsf_A 423 EAEKIQAIIEDIKERTAKGQPVLVGTISIEKSELVSNELTKA--GIKHNVLNAKFHANEAAIVAQAGYPA----AVTIAT 496 (853)
T ss_dssp HHHHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHHT--TCCCEECCTTCHHHHHHHHHTTTSTT----CEEEEE
T ss_pred HHHHHHHHHHHHHHHhcCCCCEEEEECcHHHHHHHHHHHHHC--CCCEEEecCChhHHHHHHHHhcCCCC----eEEEec
Confidence 457999999999888888999999999999999999999987 89999999998777776666777643 389999
Q ss_pred ccccccccccCC-------------------------------------CEEEEEcCCCCHhHHHHHHHhhhccCCCCcE
Q 042857 1149 RSCGLGINLATA-------------------------------------DTVIIYDSDFNPHADIQAMNRAHRIGQSKRL 1191 (1404)
Q Consensus 1149 rAgG~GINL~~A-------------------------------------dtVIi~DsdWNP~~d~QAigRahRiGQ~k~V 1191 (1404)
..+|+|+|+... .+||.||.+-++..|.|++||++|.|.....
T Consensus 497 nmAgRGtDI~l~gn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGl~VI~te~pes~riy~qr~GRTGRqGd~G~s 576 (853)
T 2fsf_A 497 NMAGRGTDIVLGGSWQAEVAALENPTAEQIEKIKADWQVRHDAVLEAGGLHIIGTERHESRRIDNQLRGRSGRQGDAGSS 576 (853)
T ss_dssp SCCSSCSCCCTTCCHHHHHHHCSSCCSSHHHHHHHHHHHHHHHHHHTTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEE
T ss_pred ccccCCcCccCCCchHhhhhhcccchhHHHHHHHHHhhhhhhHHHhcCCcEEEEccCCCCHHHHHhhccccccCCCCeeE
Confidence 999999999763 5999999999999999999999999986554
No 53
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=99.67 E-value=2.9e-16 Score=164.12 Aligned_cols=135 Identities=21% Similarity=0.365 Sum_probs=116.0
Q ss_pred hhhHHHHHHHHHHHHHHcCCeEEEEecchhHHHHHHHHHhhhcCCceEEEEeCCCCHHHHHHHHHHHhcCCCceEEEeec
Q 042857 1069 ASAKLTLLHSMLKVLYKEGHRVLIFSQMTKLLDILEDYLNIEFGPKTYERVDGSVSVGDRQAAITRFNQDKSRFVFLLST 1148 (1404)
Q Consensus 1069 ~SgKl~~L~kLL~kl~~~G~KVLIFSq~~~~LDiLed~L~~~f~g~~y~rLdGs~s~~eRq~~Id~Fn~~~s~~VfLLST 1148 (1404)
.+.|+..|..+|.. ..+.++|||++....++.|..+|... ++.+..++|+++..+|+.++++|+++... +|++|
T Consensus 19 ~~~K~~~L~~ll~~--~~~~~~lVF~~~~~~~~~l~~~L~~~--~~~~~~~hg~~~~~~r~~~~~~f~~g~~~--vlv~T 92 (163)
T 2hjv_A 19 EENKFSLLKDVLMT--ENPDSCIIFCRTKEHVNQLTDELDDL--GYPCDKIHGGMIQEDRFDVMNEFKRGEYR--YLVAT 92 (163)
T ss_dssp GGGHHHHHHHHHHH--HCCSSEEEECSSHHHHHHHHHHHHHT--TCCEEEECTTSCHHHHHHHHHHHHTTSCS--EEEEC
T ss_pred hHHHHHHHHHHHHh--cCCCcEEEEECCHHHHHHHHHHHHHc--CCcEEEEeCCCCHHHHHHHHHHHHcCCCe--EEEEC
Confidence 46799999999876 36789999999999999999999876 78999999999999999999999876555 88999
Q ss_pred ccccccccccCCCEEEEEcCCCCHhHHHHHHHhhhccCCCCcEEEEEEeeCCCHHHHHHHHHHHH
Q 042857 1149 RSCGLGINLATADTVIIYDSDFNPHADIQAMNRAHRIGQSKRLLVYRLVVRASVEERILQLAKKK 1213 (1404)
Q Consensus 1149 rAgG~GINL~~AdtVIi~DsdWNP~~d~QAigRahRiGQ~k~V~VYrLvt~~TvEE~Ilq~a~~K 1213 (1404)
.++++|||++.+++||+||++|++..+.|++||++|.||...+ |.|++.. |..++....+.
T Consensus 93 ~~~~~Gld~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~--~~~~~~~--~~~~~~~i~~~ 153 (163)
T 2hjv_A 93 DVAARGIDIENISLVINYDLPLEKESYVHRTGRTGRAGNKGKA--ISFVTAF--EKRFLADIEEY 153 (163)
T ss_dssp GGGTTTCCCSCCSEEEESSCCSSHHHHHHHTTTSSCTTCCEEE--EEEECGG--GHHHHHHHHHH
T ss_pred ChhhcCCchhcCCEEEEeCCCCCHHHHHHhccccCcCCCCceE--EEEecHH--HHHHHHHHHHH
Confidence 9999999999999999999999999999999999999987654 4555543 44455444433
No 54
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.67 E-value=4.7e-16 Score=164.30 Aligned_cols=134 Identities=20% Similarity=0.278 Sum_probs=114.1
Q ss_pred hhhHHHHHHHHHHHHHHcCCeEEEEecchhHHHHHHHHHhhhcCCceEEEEeCCCCHHHHHHHHHHHhcCCCceEEEeec
Q 042857 1069 ASAKLTLLHSMLKVLYKEGHRVLIFSQMTKLLDILEDYLNIEFGPKTYERVDGSVSVGDRQAAITRFNQDKSRFVFLLST 1148 (1404)
Q Consensus 1069 ~SgKl~~L~kLL~kl~~~G~KVLIFSq~~~~LDiLed~L~~~f~g~~y~rLdGs~s~~eRq~~Id~Fn~~~s~~VfLLST 1148 (1404)
.+.|+..|.++|... .+.++|||++....++.|..+|... ++.+..++|.++..+|+.+++.|+++... +|++|
T Consensus 15 ~~~K~~~L~~ll~~~--~~~~~lVF~~~~~~~~~l~~~L~~~--~~~~~~~hg~~~~~~r~~~~~~f~~g~~~--vLvaT 88 (172)
T 1t5i_A 15 DNEKNRKLFDLLDVL--EFNQVVIFVKSVQRCIALAQLLVEQ--NFPAIAIHRGMPQEERLSRYQQFKDFQRR--ILVAT 88 (172)
T ss_dssp GGGHHHHHHHHHHHS--CCSSEEEECSSHHHHHHHHHHHHHT--TCCEEEECTTSCHHHHHHHHHHHHTTSCS--EEEES
T ss_pred hHHHHHHHHHHHHhC--CCCcEEEEECCHHHHHHHHHHHHhc--CCCEEEEECCCCHHHHHHHHHHHHCCCCc--EEEEC
Confidence 467999999988864 5779999999999999999999876 78899999999999999999999976655 78999
Q ss_pred ccccccccccCCCEEEEEcCCCCHhHHHHHHHhhhccCCCCcEEEEEEeeCCCHHHHHHHHHH
Q 042857 1149 RSCGLGINLATADTVIIYDSDFNPHADIQAMNRAHRIGQSKRLLVYRLVVRASVEERILQLAK 1211 (1404)
Q Consensus 1149 rAgG~GINL~~AdtVIi~DsdWNP~~d~QAigRahRiGQ~k~V~VYrLvt~~TvEE~Ilq~a~ 1211 (1404)
.++++|||++.+++||+||++||+..++|++||++|.|+...+. .|++.. -+..++....
T Consensus 89 ~~~~~Gldi~~~~~Vi~~d~p~~~~~~~qr~GR~~R~g~~g~~~--~~~~~~-~~~~~~~~l~ 148 (172)
T 1t5i_A 89 NLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAI--TFVSDE-NDAKILNDVQ 148 (172)
T ss_dssp SCCSTTCCGGGCSEEEESSCCSSHHHHHHHHHHHTGGGCCCEEE--EEECSH-HHHHHHHHHH
T ss_pred CchhcCcchhhCCEEEEECCCCCHHHHHHHhcccccCCCCcEEE--EEEcCh-hHHHHHHHHH
Confidence 99999999999999999999999999999999999999876544 445442 1334444333
No 55
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=99.66 E-value=4.9e-16 Score=196.26 Aligned_cols=117 Identities=15% Similarity=0.100 Sum_probs=100.7
Q ss_pred hhhHHHHHHHHHHHHHHcCCeEEEEecchhHHHHHHHHHhhhcCCceEEEEeCCCCHHHHHHHHHHHhcCCCceEEEeec
Q 042857 1069 ASAKLTLLHSMLKVLYKEGHRVLIFSQMTKLLDILEDYLNIEFGPKTYERVDGSVSVGDRQAAITRFNQDKSRFVFLLST 1148 (1404)
Q Consensus 1069 ~SgKl~~L~kLL~kl~~~G~KVLIFSq~~~~LDiLed~L~~~f~g~~y~rLdGs~s~~eRq~~Id~Fn~~~s~~VfLLST 1148 (1404)
...|+.+|...+......|..||||+......+.|...|... |+.+..|+|.....++.-+.++|+.+ .++|+|
T Consensus 442 ~~~K~~al~~~i~~~~~~gqpvLVft~Sie~sE~Ls~~L~~~--Gi~~~vLnak~~~rEa~iia~agr~G----~VtIAT 515 (922)
T 1nkt_A 442 EEAKYIAVVDDVAERYAKGQPVLIGTTSVERSEYLSRQFTKR--RIPHNVLNAKYHEQEATIIAVAGRRG----GVTVAT 515 (922)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHT--TCCCEEECSSCHHHHHHHHHTTTSTT----CEEEEE
T ss_pred HHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHC--CCCEEEecCChhHHHHHHHHhcCCCC----eEEEec
Confidence 356999999999888888999999999999999999999987 89999999997666655555666533 379999
Q ss_pred ccccccccccCC----------------------------------------------------CEEEEEcCCCCHhHHH
Q 042857 1149 RSCGLGINLATA----------------------------------------------------DTVIIYDSDFNPHADI 1176 (1404)
Q Consensus 1149 rAgG~GINL~~A----------------------------------------------------dtVIi~DsdWNP~~d~ 1176 (1404)
..+|+|+|+... .+||.||.+-++..|.
T Consensus 516 nmAgRGtDI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGlhVI~te~pes~riy~ 595 (922)
T 1nkt_A 516 NMAGRGTDIVLGGNVDFLTDQRLRERGLDPVETPEEYEAAWHSELPIVKEEASKEAKEVIEAGGLYVLGTERHESRRIDN 595 (922)
T ss_dssp TTCSTTCCCCTTCCHHHHHHHHHHHTTCCTTTSHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTSEEEEECSCCSSHHHHH
T ss_pred chhhcCccccCCCCHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHhhhHHHhcCCcEEEeccCCCCHHHHH
Confidence 999999999853 4999999999999999
Q ss_pred HHHHhhhccCCCCcE
Q 042857 1177 QAMNRAHRIGQSKRL 1191 (1404)
Q Consensus 1177 QAigRahRiGQ~k~V 1191 (1404)
|++||++|.|.....
T Consensus 596 qr~GRTGRqGdpG~s 610 (922)
T 1nkt_A 596 QLRGRSGRQGDPGES 610 (922)
T ss_dssp HHHHTSSGGGCCEEE
T ss_pred HHhcccccCCCCeeE
Confidence 999999999986554
No 56
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.66 E-value=2.6e-16 Score=168.41 Aligned_cols=125 Identities=24% Similarity=0.351 Sum_probs=97.4
Q ss_pred hhhHHHHHHHHHHHHHHcCCeEEEEecchhHHHHHHHHHhhhcCCceEEEEeCCCCHHHHHHHHHHHhcCCCceEEEeec
Q 042857 1069 ASAKLTLLHSMLKVLYKEGHRVLIFSQMTKLLDILEDYLNIEFGPKTYERVDGSVSVGDRQAAITRFNQDKSRFVFLLST 1148 (1404)
Q Consensus 1069 ~SgKl~~L~kLL~kl~~~G~KVLIFSq~~~~LDiLed~L~~~f~g~~y~rLdGs~s~~eRq~~Id~Fn~~~s~~VfLLST 1148 (1404)
.+.|+..|.++|... ..+.++|||++....++.|..+|... ++.+..++|+++..+|+.+++.|+.+... +|++|
T Consensus 29 ~~~K~~~L~~ll~~~-~~~~k~lVF~~~~~~~~~l~~~L~~~--g~~~~~lhg~~~~~~r~~~~~~f~~g~~~--vLvaT 103 (185)
T 2jgn_A 29 ESDKRSFLLDLLNAT-GKDSLTLVFVETKKGADSLEDFLYHE--GYACTSIHGDRSQRDREEALHQFRSGKSP--ILVAT 103 (185)
T ss_dssp GGGHHHHHHHHHHHC--CCSCEEEEESCHHHHHHHHHHHHHT--TCCEEEEC--------CHHHHHHHHTSSS--EEEEE
T ss_pred cHHHHHHHHHHHHhc-CCCCeEEEEECCHHHHHHHHHHHHHc--CCceEEEeCCCCHHHHHHHHHHHHcCCCe--EEEEc
Confidence 578999999998874 35789999999999999999999876 78999999999999999999999977665 88999
Q ss_pred ccccccccccCCCEEEEEcCCCCHhHHHHHHHhhhccCCCCcEEEEEEeeCC
Q 042857 1149 RSCGLGINLATADTVIIYDSDFNPHADIQAMNRAHRIGQSKRLLVYRLVVRA 1200 (1404)
Q Consensus 1149 rAgG~GINL~~AdtVIi~DsdWNP~~d~QAigRahRiGQ~k~V~VYrLvt~~ 1200 (1404)
.++++|||++.++.||+||++||+..++|++||++|.|+... +|.|++..
T Consensus 104 ~~~~~Gldi~~~~~VI~~d~p~s~~~~~Qr~GR~~R~g~~g~--~~~~~~~~ 153 (185)
T 2jgn_A 104 AVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGL--ATSFFNER 153 (185)
T ss_dssp C------CCCSBSEEEESSCCSSHHHHHHHHTTBCCTTSCEE--EEEEECGG
T ss_pred ChhhcCCCcccCCEEEEeCCCCCHHHHHHHccccCCCCCCcE--EEEEEchh
Confidence 999999999999999999999999999999999999998654 45566654
No 57
>2b2y_A CHD-1, chromodomain-helicase-DNA-binding protein 1; three stranded antiparallel beta sheet, alpha helix linker, peptide binding protein; 2.35A {Homo sapiens} SCOP: b.34.13.2 b.34.13.2 PDB: 2b2u_A* 2b2v_A* 2b2w_A 2b2t_A*
Probab=99.66 E-value=2.2e-17 Score=176.66 Aligned_cols=106 Identities=32% Similarity=0.623 Sum_probs=84.0
Q ss_pred CceeEEEEEEecCccccccccCCHHHHHH---HHHHHHHHHHHhhCccc--------------------ccchhhhccch
Q 042857 608 KAVSYEFLVKWVGKSNIHNSWIPESQLKV---LAKRKLENYKAKYGTTV--------------------INICDERWKQP 664 (1404)
Q Consensus 608 ~~~~~eylVKw~~~Sy~h~~Wv~e~~l~~---~~~~~l~~~~~k~~~~~--------------------~~~~~~e~~~~ 664 (1404)
..+..||||||+|+||+||+|+|++.|.. .+.++++||.+++.... ...+.++|+.|
T Consensus 54 ~~~~~eYlVKWkg~s~~h~tWe~~~~L~~~~~~~~~kl~nf~kk~~~~~~~~~~~s~Ed~e~~~~~~e~~~~~~~e~~~V 133 (187)
T 2b2y_A 54 EPGEIQYLIKWKGWSHIHNTWETEETLKQQNVRGMKKLDNYKKKDQETKRWLKNASPEDVEYYNCQQELTDDLHKQYQIV 133 (187)
T ss_dssp SCCEEEEEEEETTSCGGGCEEECHHHHHHTTCBCHHHHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHHHHHHHHTTSE
T ss_pred cCCcEEEEEEECCCCcccCeeCCHHHhCccchhhHHHHHHHHHhhhccccccccCCHHHHhhhhhhhhHHhhhhhhccee
Confidence 34568999999999999999999999985 46789999988764210 01245789999
Q ss_pred hhhhhhccC--CCCcceeeeccCCCCCCcccccCCCchHHHhhHHHHHHHHH
Q 042857 665 QRVISLRSS--KDGTREAFVKWTGLPYDECTWEKLDEPALEKYSHLTDLFVQ 714 (1404)
Q Consensus 665 eRii~~r~~--~~~~~eylVKW~gL~Y~~~TWE~~~~~~~~~~~~li~~~~~ 714 (1404)
+|||+++.. .++..+|||||+||||++||||..+ .....++.+|+.|.+
T Consensus 134 ErIi~~r~~~~~~g~~~yLVKWkgl~Y~e~TWE~~~-~i~~~~~~~I~~f~~ 184 (187)
T 2b2y_A 134 GRIIAHSNQKSAAGYPDYYCKWQGLPYSECSWEDGA-LISKKFQACIDEYFS 184 (187)
T ss_dssp EEEEEEEEEECTTSCEEEEEEETTSCGGGCEEECHH-HHHHHHHHHHHHHHH
T ss_pred EEEEEeeeecCCCCcEEEEEEECCCChhhCcccchh-hhhhhHHHHHHHHHh
Confidence 999999864 5678999999999999999999643 222357888888875
No 58
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=99.66 E-value=5.6e-16 Score=172.23 Aligned_cols=145 Identities=24% Similarity=0.261 Sum_probs=112.4
Q ss_pred CccCCCCCCCHHHHHHHHHHHHhhccCCcEEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEeCC-CChHHHHHHHHH
Q 042857 748 PEELKGGALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPL-STMPNWLAEFAL 826 (1404)
Q Consensus 748 P~~l~g~~L~pyQlegVnwL~~~~~~~~~~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP~-Sll~nW~rEf~k 826 (1404)
|.+..+..|+|||.+++.+++. +.++||+++||+|||+++++++..+ .+++|||||. +++.||.++|..
T Consensus 86 p~~~~~~~l~~~Q~~ai~~~~~----~~~~ll~~~tG~GKT~~a~~~~~~~------~~~~liv~P~~~L~~q~~~~~~~ 155 (237)
T 2fz4_A 86 PYFDAEISLRDYQEKALERWLV----DKRGCIVLPTGSGKTHVAMAAINEL------STPTLIVVPTLALAEQWKERLGI 155 (237)
T ss_dssp CCCCCCCCCCHHHHHHHHHHTT----TSEEEEEESSSTTHHHHHHHHHHHS------CSCEEEEESSHHHHHHHHHHHGG
T ss_pred ccccCCCCcCHHHHHHHHHHHh----CCCEEEEeCCCCCHHHHHHHHHHHc------CCCEEEEeCCHHHHHHHHHHHHh
Confidence 3333456899999999987654 5679999999999999998887654 4689999999 566999999999
Q ss_pred HCCCCc-EEEEecchhHHHHHHHhhhccCCCCccccccCCCCceEEEeeHHHHHhhhccccCCCceEEEEccccccCCCc
Q 042857 827 WAPNLN-VVEYHGCAKARAIIRQYEWHASDPDNLNKKTSSYKFNVLLTTYEMILADSSHLRGVPWEVLVVDEGHRLKNSG 905 (1404)
Q Consensus 827 w~P~l~-Vvvy~G~~~~R~~ir~~E~~~~~~~~~~~~~~~~kfdVvITTYe~l~~d~~~L~~i~w~lVIVDEAHrlKN~~ 905 (1404)
| ++. +..+.|... ...+|+|+||+.+......+. ..|++|||||+|++.+..
T Consensus 156 ~--~~~~v~~~~g~~~------------------------~~~~i~v~T~~~l~~~~~~~~-~~~~llIiDEaH~l~~~~ 208 (237)
T 2fz4_A 156 F--GEEYVGEFSGRIK------------------------ELKPLTVSTYDSAYVNAEKLG-NRFMLLIFDEVHHLPAES 208 (237)
T ss_dssp G--CGGGEEEESSSCB------------------------CCCSEEEEEHHHHHHTHHHHT-TTCSEEEEECSSCCCTTT
T ss_pred C--CCCeEEEEeCCCC------------------------CcCCEEEEeHHHHHhhHHHhc-ccCCEEEEECCccCCChH
Confidence 4 566 777777432 145799999999987766543 459999999999997643
Q ss_pred cHHHHHHhhcccccEEEEeccCCCCC
Q 042857 906 SKLFSLLNSFSFQHRVLLTGTPLQNN 931 (1404)
Q Consensus 906 Sk~~~~L~~l~~~~rLLLTGTPlqNn 931 (1404)
....+..+...++|+|||||.+++
T Consensus 209 --~~~i~~~~~~~~~l~LSATp~r~D 232 (237)
T 2fz4_A 209 --YVQIAQMSIAPFRLGLTATFERED 232 (237)
T ss_dssp --HHHHHHTCCCSEEEEEEESCC---
T ss_pred --HHHHHHhccCCEEEEEecCCCCCC
Confidence 445666778889999999998765
No 59
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=99.64 E-value=3.8e-16 Score=197.57 Aligned_cols=121 Identities=16% Similarity=0.194 Sum_probs=94.9
Q ss_pred HcCCeEEEEecchhHHHHHHHHHhhhcCCceEEEEeCCCCHHHHHHHHHHHhcCCCceEEEeecccccccccccCCCEEE
Q 042857 1085 KEGHRVLIFSQMTKLLDILEDYLNIEFGPKTYERVDGSVSVGDRQAAITRFNQDKSRFVFLLSTRSCGLGINLATADTVI 1164 (1404)
Q Consensus 1085 ~~G~KVLIFSq~~~~LDiLed~L~~~f~g~~y~rLdGs~s~~eRq~~Id~Fn~~~s~~VfLLSTrAgG~GINL~~AdtVI 1164 (1404)
+.+.++|||++.....+.+..+|... ++.+..+||. +|+++++.|.++... +|++|.++++|||++ +++||
T Consensus 408 ~~~~~~lVF~~s~~~~e~la~~L~~~--g~~v~~lHg~----eR~~v~~~F~~g~~~--VLVaTdv~e~GIDip-v~~VI 478 (673)
T 2wv9_A 408 DYAGKTVWFVASVKMSNEIAQCLQRA--GKRVIQLNRK----SYDTEYPKCKNGDWD--FVITTDISEMGANFG-ASRVI 478 (673)
T ss_dssp SCCSCEEEECSSHHHHHHHHHHHHTT--TCCEEEECSS----SHHHHGGGGGTCCCS--EEEECGGGGTTCCCC-CSEEE
T ss_pred hCCCCEEEEECCHHHHHHHHHHHHhC--CCeEEEeChH----HHHHHHHHHHCCCce--EEEECchhhcceeeC-CcEEE
Confidence 35889999999999999999999876 7889999994 899999999876655 899999999999999 99999
Q ss_pred E--------------------EcCCCCHhHHHHHHHhhhcc-CCCCcEEEEEEeeC-CCHHHHHHHHHHHHHhh
Q 042857 1165 I--------------------YDSDFNPHADIQAMNRAHRI-GQSKRLLVYRLVVR-ASVEERILQLAKKKLML 1216 (1404)
Q Consensus 1165 i--------------------~DsdWNP~~d~QAigRahRi-GQ~k~V~VYrLvt~-~TvEE~Ilq~a~~Kl~L 1216 (1404)
+ ||.+.++..++|++||++|. |+...+ |.|+.. ..-|..++...+.++.+
T Consensus 479 ~~g~~~~p~vi~da~~r~~ll~d~P~s~~~y~Qr~GRaGR~~g~~G~a--i~l~~~~~~~d~~~l~~ie~~~~l 550 (673)
T 2wv9_A 479 DCRKSVKPTILDEGEGRVILSVPSAITSASAAQRRGRVGRNPSQIGDE--YHYGGGTSEDDTMLAHWTEAKILL 550 (673)
T ss_dssp ECCEECCEEEECSTTCEEEECCSEECCHHHHHHHHTTSSCCSSCCCEE--EEECSCCCCCCTTBHHHHHHHHHH
T ss_pred ECCCcccceeeecccccceecccCCCCHHHHHHHhhccCCCCCCCCEE--EEEEecCChhHHHHHHHHHHHHhh
Confidence 7 56788999999999999999 554443 444321 12233444444444433
No 60
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=99.64 E-value=1.2e-15 Score=185.18 Aligned_cols=105 Identities=14% Similarity=0.118 Sum_probs=87.2
Q ss_pred cCCeEEEEecchhHHHHHHHHHhhhcCCceEEEEeCCCCHHHHHHHHHHHhcCCCceEEEeecccccccccccCCCEEEE
Q 042857 1086 EGHRVLIFSQMTKLLDILEDYLNIEFGPKTYERVDGSVSVGDRQAAITRFNQDKSRFVFLLSTRSCGLGINLATADTVII 1165 (1404)
Q Consensus 1086 ~G~KVLIFSq~~~~LDiLed~L~~~f~g~~y~rLdGs~s~~eRq~~Id~Fn~~~s~~VfLLSTrAgG~GINL~~AdtVIi 1165 (1404)
.+.++|||++.....+.|..+|... ++.+..++|. +|+.+++.|.++... +|++|.++++|||++. +.||.
T Consensus 189 ~~~~~LVF~~s~~~~~~l~~~L~~~--g~~v~~lh~~----~R~~~~~~f~~g~~~--iLVaT~v~~~GiDip~-~~VI~ 259 (459)
T 2z83_A 189 YAGKTVWFVASVKMGNEIAMCLQRA--GKKVIQLNRK----SYDTEYPKCKNGDWD--FVITTDISEMGANFGA-SRVID 259 (459)
T ss_dssp CCSCEEEECSCHHHHHHHHHHHHHT--TCCEEEESTT----CCCCCGGGSSSCCCS--EEEESSCC---CCCSC-SEEEE
T ss_pred cCCCEEEEeCChHHHHHHHHHHHhc--CCcEEecCHH----HHHHHHhhccCCCce--EEEECChHHhCeecCC-CEEEE
Confidence 4779999999999999999999876 7889999995 788899999876555 8999999999999998 99998
Q ss_pred --------------------EcCCCCHhHHHHHHHhhhccCCCCcEEEEEEeeCC
Q 042857 1166 --------------------YDSDFNPHADIQAMNRAHRIGQSKRLLVYRLVVRA 1200 (1404)
Q Consensus 1166 --------------------~DsdWNP~~d~QAigRahRiGQ~k~V~VYrLvt~~ 1200 (1404)
||.+.++..++|++||++|.|... -..|.|++..
T Consensus 260 ~G~~~~~~~~~~~~~~~~~~~d~p~s~~~~~QR~GRaGR~g~~~-G~~~~~~~~~ 313 (459)
T 2z83_A 260 CRKSVKPTILEEGEGRVILGNPSPITSASAAQRRGRVGRNPNQV-GDEYHYGGAT 313 (459)
T ss_dssp CCEECCEEEECSSSCEEEECSCEECCHHHHHHHHTTSSCCTTCC-CEEEEECSCC
T ss_pred CCcccccccccccccccccccCCCCCHHHHHHhccccCCCCCCC-CeEEEEEccc
Confidence 789999999999999999999622 2345666665
No 61
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.63 E-value=1.1e-15 Score=164.57 Aligned_cols=123 Identities=22% Similarity=0.322 Sum_probs=106.5
Q ss_pred hhhHHHHHHHHHHHHHHcCCeEEEEecchhHHHHHHHHHhhhcCCceEEEEeCCCCHHHHHHHHHHHhcCCCceEEEeec
Q 042857 1069 ASAKLTLLHSMLKVLYKEGHRVLIFSQMTKLLDILEDYLNIEFGPKTYERVDGSVSVGDRQAAITRFNQDKSRFVFLLST 1148 (1404)
Q Consensus 1069 ~SgKl~~L~kLL~kl~~~G~KVLIFSq~~~~LDiLed~L~~~f~g~~y~rLdGs~s~~eRq~~Id~Fn~~~s~~VfLLST 1148 (1404)
.+.|+..|.++|.. .+.++|||++....++.|..+|... ++.+..++|.++..+|+.+++.|+++... +|++|
T Consensus 39 ~~~K~~~L~~~l~~---~~~~~lVF~~~~~~~~~l~~~L~~~--g~~~~~lhg~~~~~~R~~~l~~F~~g~~~--vLvaT 111 (191)
T 2p6n_A 39 EEAKMVYLLECLQK---TPPPVLIFAEKKADVDAIHEYLLLK--GVEAVAIHGGKDQEERTKAIEAFREGKKD--VLVAT 111 (191)
T ss_dssp GGGHHHHHHHHHTT---SCSCEEEECSCHHHHHHHHHHHHHH--TCCEEEECTTSCHHHHHHHHHHHHHTSCS--EEEEC
T ss_pred hHHHHHHHHHHHHh---CCCCEEEEECCHHHHHHHHHHHHHc--CCcEEEEeCCCCHHHHHHHHHHHhcCCCE--EEEEc
Confidence 46788888877764 4679999999999999999999876 78899999999999999999999977655 88999
Q ss_pred ccccccccccCCCEEEEEcCCCCHhHHHHHHHhhhccCCCCcEEEEEEeeCC
Q 042857 1149 RSCGLGINLATADTVIIYDSDFNPHADIQAMNRAHRIGQSKRLLVYRLVVRA 1200 (1404)
Q Consensus 1149 rAgG~GINL~~AdtVIi~DsdWNP~~d~QAigRahRiGQ~k~V~VYrLvt~~ 1200 (1404)
.++++|||++.+++||+||++||+..++|++||++|.|++..+ +.|++..
T Consensus 112 ~~~~~Gldi~~v~~VI~~d~p~~~~~~~qr~GR~gR~g~~g~~--i~l~~~~ 161 (191)
T 2p6n_A 112 DVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGCSGNTGIA--TTFINKA 161 (191)
T ss_dssp HHHHTTCCCCCCSEEEESSCCSSHHHHHHHHTTSCC---CCEE--EEEECTT
T ss_pred CchhcCCCcccCCEEEEeCCCCCHHHHHHHhCccccCCCCcEE--EEEEcCc
Confidence 9999999999999999999999999999999999999997654 4566654
No 62
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=99.62 E-value=3.8e-15 Score=187.07 Aligned_cols=120 Identities=14% Similarity=0.118 Sum_probs=95.4
Q ss_pred HcCCeEEEEecchhHHHHHHHHHhhhcCCceEEEEeCCCCHHHHHHHHHHHhcCCCceEEEeecccccccccccCCCEE-
Q 042857 1085 KEGHRVLIFSQMTKLLDILEDYLNIEFGPKTYERVDGSVSVGDRQAAITRFNQDKSRFVFLLSTRSCGLGINLATADTV- 1163 (1404)
Q Consensus 1085 ~~G~KVLIFSq~~~~LDiLed~L~~~f~g~~y~rLdGs~s~~eRq~~Id~Fn~~~s~~VfLLSTrAgG~GINL~~AdtV- 1163 (1404)
+.+.++|||++.....+.|..+|... ++.+..+||. +|+++++.|.++... +|++|.++++|||+. +++|
T Consensus 353 ~~~~~~LVF~~s~~~a~~l~~~L~~~--g~~v~~lhg~----~R~~~l~~F~~g~~~--VLVaTdv~~rGiDi~-v~~VI 423 (618)
T 2whx_A 353 DYQGKTVWFVPSIKAGNDIANCLRKS--GKRVIQLSRK----TFDTEYPKTKLTDWD--FVVTTDISEMGANFR-AGRVI 423 (618)
T ss_dssp HCCSCEEEECSSHHHHHHHHHHHHHT--TCCEEEECTT----THHHHTTHHHHSCCS--EEEECGGGGTTCCCC-CSEEE
T ss_pred hCCCCEEEEECChhHHHHHHHHHHHc--CCcEEEEChH----HHHHHHHhhcCCCcE--EEEECcHHHcCcccC-ceEEE
Confidence 35779999999999999999999976 7889999984 788899999877655 899999999999996 8888
Q ss_pred -------------------EEEcCCCCHhHHHHHHHhhhccCCCCcEEEEEEeeCCC-HHHHHHHHHHHHH
Q 042857 1164 -------------------IIYDSDFNPHADIQAMNRAHRIGQSKRLLVYRLVVRAS-VEERILQLAKKKL 1214 (1404)
Q Consensus 1164 -------------------Ii~DsdWNP~~d~QAigRahRiGQ~k~V~VYrLvt~~T-vEE~Ilq~a~~Kl 1214 (1404)
|+||.+-++..++|++||++|.|.... .+|.|++... -|...+...+.++
T Consensus 424 d~g~~~~P~~~~~~~~~~~i~~d~P~s~~~yiQR~GRaGR~g~~~G-~ai~l~~~~~~~d~~~l~~le~~i 493 (618)
T 2whx_A 424 DPRRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQED-DQYVFSGDPLKNDEDHAHWTEAKM 493 (618)
T ss_dssp ECCEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCC-EEEEECSCCCCCCTTCHHHHHHHH
T ss_pred ECcceecceecccCCCceEEcccccCCHHHHHHhccccCCCCCCCC-eEEEEccCCchhhHHHHHHHHhHh
Confidence 778888999999999999999986333 2566666221 2334444444443
No 63
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=99.61 E-value=1.4e-15 Score=159.17 Aligned_cols=124 Identities=22% Similarity=0.314 Sum_probs=106.6
Q ss_pred hHHHHHHHHHHHHHHcCCeEEEEecchhHHHHHHHHHhhhcCCceEEEEeCCCCHHHHHHHHHHHhcCCCceEEEeeccc
Q 042857 1071 AKLTLLHSMLKVLYKEGHRVLIFSQMTKLLDILEDYLNIEFGPKTYERVDGSVSVGDRQAAITRFNQDKSRFVFLLSTRS 1150 (1404)
Q Consensus 1071 gKl~~L~kLL~kl~~~G~KVLIFSq~~~~LDiLed~L~~~f~g~~y~rLdGs~s~~eRq~~Id~Fn~~~s~~VfLLSTrA 1150 (1404)
.|+..|.+++... .+.++|||++....++.|..+|... ++.+..++|+++..+|+.+++.|+++... +|++|.+
T Consensus 16 ~K~~~l~~ll~~~--~~~~~lVF~~~~~~~~~l~~~L~~~--~~~~~~~~~~~~~~~r~~~~~~f~~g~~~--vlv~T~~ 89 (165)
T 1fuk_A 16 YKYECLTDLYDSI--SVTQAVIFCNTRRKVEELTTKLRND--KFTVSAIYSDLPQQERDTIMKEFRSGSSR--ILISTDL 89 (165)
T ss_dssp GHHHHHHHHHHHT--TCSCEEEEESSHHHHHHHHHHHHHT--TCCEEEECTTSCHHHHHHHHHHHHTTSCS--EEEEEGG
T ss_pred hHHHHHHHHHHhC--CCCCEEEEECCHHHHHHHHHHHHHc--CCCEEEEECCCCHHHHHHHHHHHHcCCCE--EEEEcCh
Confidence 3899999988874 5789999999999999999999876 78899999999999999999999876655 8899999
Q ss_pred ccccccccCCCEEEEEcCCCCHhHHHHHHHhhhccCCCCcEEEEEEeeCCCH
Q 042857 1151 CGLGINLATADTVIIYDSDFNPHADIQAMNRAHRIGQSKRLLVYRLVVRASV 1202 (1404)
Q Consensus 1151 gG~GINL~~AdtVIi~DsdWNP~~d~QAigRahRiGQ~k~V~VYrLvt~~Tv 1202 (1404)
+++|||++.+++||+||++|++..+.|++||++|.|+... +|.|++....
T Consensus 90 ~~~G~d~~~~~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~--~~~~~~~~~~ 139 (165)
T 1fuk_A 90 LARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGV--AINFVTNEDV 139 (165)
T ss_dssp GTTTCCCCSCSEEEESSCCSSGGGGGGSSCSCC-----CE--EEEEEETTTH
T ss_pred hhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCce--EEEEEcchHH
Confidence 9999999999999999999999999999999999998665 4566776643
No 64
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=99.61 E-value=3e-15 Score=192.44 Aligned_cols=114 Identities=15% Similarity=0.150 Sum_probs=95.4
Q ss_pred cCCeEEEEecchhHHHHHHHHHhh---------hcCCceEEEEeCCCCHHHHHHHHHHHhcC---CCceEEEeecccccc
Q 042857 1086 EGHRVLIFSQMTKLLDILEDYLNI---------EFGPKTYERVDGSVSVGDRQAAITRFNQD---KSRFVFLLSTRSCGL 1153 (1404)
Q Consensus 1086 ~G~KVLIFSq~~~~LDiLed~L~~---------~f~g~~y~rLdGs~s~~eRq~~Id~Fn~~---~s~~VfLLSTrAgG~ 1153 (1404)
.+.++|||+......+.+...|.. ...++.+..++|+++..+|+.+++.|... .+..-+|++|.+++.
T Consensus 302 ~~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~kVlVAT~iae~ 381 (773)
T 2xau_A 302 EAGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKVVISTNIAET 381 (773)
T ss_dssp CSCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEEEEEECTHHHH
T ss_pred CCCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCceEEEEeCcHHHh
Confidence 477999999999998888888864 12578899999999999999999999721 234568999999999
Q ss_pred cccccCCCEEEEEcC------------------CCCHhHHHHHHHhhhccCCCCcEEEEEEeeCCCH
Q 042857 1154 GINLATADTVIIYDS------------------DFNPHADIQAMNRAHRIGQSKRLLVYRLVVRASV 1202 (1404)
Q Consensus 1154 GINL~~AdtVIi~Ds------------------dWNP~~d~QAigRahRiGQ~k~V~VYrLvt~~Tv 1202 (1404)
|||+..+++||.++. +.+...+.|+.||++|. ++=.+|+|++...+
T Consensus 382 GidIp~v~~VId~g~~k~~~yd~~~g~~~L~~~p~S~~s~~QR~GRaGR~---~~G~~~~l~~~~~~ 445 (773)
T 2xau_A 382 SLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT---RPGKCFRLYTEEAF 445 (773)
T ss_dssp TCCCTTEEEEEECSEEEEEEEETTTTEEEEEEEECCHHHHHHHHHGGGSS---SSEEEEESSCHHHH
T ss_pred CcCcCCeEEEEeCCCccceeeccccCccccccccCCHHHHHhhccccCCC---CCCEEEEEecHHHh
Confidence 999999999999665 88999999999999998 34567888876544
No 65
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=99.60 E-value=1.4e-15 Score=190.60 Aligned_cols=262 Identities=21% Similarity=0.203 Sum_probs=170.8
Q ss_pred ccCCcEEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEeCCCCh-HHHHHHHHHHCCCCcEEEEecchhHHHHHHHhh
Q 042857 772 HKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLSTM-PNWLAEFALWAPNLNVVEYHGCAKARAIIRQYE 850 (1404)
Q Consensus 772 ~~~~~~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP~Sll-~nW~rEf~kw~P~l~Vvvy~G~~~~R~~ir~~E 850 (1404)
..+.++|+..++|.|||.++...+.. ....+||++|...+ .|+.+.+.+.+ ...+....|...
T Consensus 230 ~~~~~vlv~ApTGSGKT~a~~l~ll~------~g~~vLVl~PTReLA~Qia~~l~~~~-g~~vg~~vG~~~--------- 293 (666)
T 3o8b_A 230 QSFQVAHLHAPTGSGKSTKVPAAYAA------QGYKVLVLNPSVAATLGFGAYMSKAH-GIDPNIRTGVRT--------- 293 (666)
T ss_dssp SSCEEEEEECCTTSCTTTHHHHHHHH------TTCCEEEEESCHHHHHHHHHHHHHHH-SCCCEEECSSCE---------
T ss_pred HcCCeEEEEeCCchhHHHHHHHHHHH------CCCeEEEEcchHHHHHHHHHHHHHHh-CCCeeEEECcEe---------
Confidence 34678899999999999877655542 12379999999766 67877776655 344444454321
Q ss_pred hccCCCCccccccCCCCceEEEeeHHHHHhhhccccCCCceEEEEccccccCCCc-cHHHHHHhhcccc---cEEEEecc
Q 042857 851 WHASDPDNLNKKTSSYKFNVLLTTYEMILADSSHLRGVPWEVLVVDEGHRLKNSG-SKLFSLLNSFSFQ---HRVLLTGT 926 (1404)
Q Consensus 851 ~~~~~~~~~~~~~~~~kfdVvITTYe~l~~d~~~L~~i~w~lVIVDEAHrlKN~~-Sk~~~~L~~l~~~---~rLLLTGT 926 (1404)
.....+|+++|++.+..+. .+...++++|||||||.+--.. ..+...+..+... ..++||||
T Consensus 294 -------------~~~~~~IlV~TPGrLl~~~-~l~l~~l~~lVlDEAH~l~~~~~~~l~~Il~~l~~~~~~llil~SAT 359 (666)
T 3o8b_A 294 -------------ITTGAPVTYSTYGKFLADG-GCSGGAYDIIICDECHSTDSTTILGIGTVLDQAETAGARLVVLATAT 359 (666)
T ss_dssp -------------ECCCCSEEEEEHHHHHHTT-SCCTTSCSEEEETTTTCCSHHHHHHHHHHHHHTTTTTCSEEEEEESS
T ss_pred -------------ccCCCCEEEECcHHHHhCC-CcccCcccEEEEccchhcCccHHHHHHHHHHhhhhcCCceEEEECCC
Confidence 1235789999999986543 3445568899999998763211 1133344444322 25778999
Q ss_pred CCCCChHHHHHHhhhhCCCCCCChhHHHHHhccccchHHHHHHHHhhhhhhhhhhHhhhhhcCCCceEEEEEecCCHHHH
Q 042857 927 PLQNNIGEMYNLLNFLQPASFPSLSSFEEKFNDLTTTQKVEELKKLVAPHMLRRLKKDAMQNIPPKTERMVPVELSSIQA 1006 (1404)
Q Consensus 927 PlqNnl~EL~sLL~fL~P~~f~s~~~F~~~f~d~~~~~~i~~L~~lL~p~mLRR~K~dV~~~LPpk~e~iV~V~LS~~Qk 1006 (1404)
|-.. +.. ..|. ...+.+..... .
T Consensus 360 ~~~~----------------i~~--------------------------------------~~p~--i~~v~~~~~~~-i 382 (666)
T 3o8b_A 360 PPGS----------------VTV--------------------------------------PHPN--IEEVALSNTGE-I 382 (666)
T ss_dssp CTTC----------------CCC--------------------------------------CCTT--EEEEECBSCSS-E
T ss_pred CCcc----------------ccc--------------------------------------CCcc--eEEEeecccch-h
Confidence 8431 000 0000 00011100000 0
Q ss_pred HHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCcHHHHHHHHHhhhhHHHHHHHHHHHHHHc
Q 042857 1007 EYYRAMLTKNYQILRNIGKGVAQQSMLNIVMQLRKVCNHPYLIPGTEPDSGSVEFLHEMRIKASAKLTLLHSMLKVLYKE 1086 (1404)
Q Consensus 1007 ~~Y~~il~~n~~~L~~~~kg~~~~sllnilm~LRK~cnHP~L~~~~e~~~~~~e~l~~~~i~~SgKl~~L~kLL~kl~~~ 1086 (1404)
.++ .... . + . ...
T Consensus 383 ~~~--------------~~~~--------------------------------------------~---l----~--~~~ 395 (666)
T 3o8b_A 383 PFY--------------GKAI--------------------------------------------P---I----E--AIR 395 (666)
T ss_dssp EET--------------TEEE--------------------------------------------C---G----G--GSS
T ss_pred HHH--------------Hhhh--------------------------------------------h---h----h--hcc
Confidence 000 0000 0 0 0 014
Q ss_pred CCeEEEEecchhHHHHHHHHHhhhcCCceEEEEeCCCCHHHHHHHHHHHhcCCCceEEEeecccccccccccCCCEEE--
Q 042857 1087 GHRVLIFSQMTKLLDILEDYLNIEFGPKTYERVDGSVSVGDRQAAITRFNQDKSRFVFLLSTRSCGLGINLATADTVI-- 1164 (1404)
Q Consensus 1087 G~KVLIFSq~~~~LDiLed~L~~~f~g~~y~rLdGs~s~~eRq~~Id~Fn~~~s~~VfLLSTrAgG~GINL~~AdtVI-- 1164 (1404)
+.++|||++.....+.|..+|... ++.+..+||++++.+ |.+.+. .+|++|.++++|||+. ++.||
T Consensus 396 ~~~vLVFv~Tr~~ae~la~~L~~~--g~~v~~lHG~l~q~e-------r~~~~~--~VLVATdVaerGIDId-V~~VI~~ 463 (666)
T 3o8b_A 396 GGRHLIFCHSKKKCDELAAKLSGL--GINAVAYYRGLDVSV-------IPTIGD--VVVVATDALMTGYTGD-FDSVIDC 463 (666)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHTT--TCCEEEECTTSCGGG-------SCSSSC--EEEEECTTHHHHCCCC-BSEEEEC
T ss_pred CCcEEEEeCCHHHHHHHHHHHHhC--CCcEEEecCCCCHHH-------HHhCCC--cEEEECChHHccCCCC-CcEEEec
Confidence 779999999999999999999876 788999999999764 333333 5899999999999986 99998
Q ss_pred --------EEc-----------CCCCHhHHHHHHHhhhccCCCCcEEEEEEeeCCCHH
Q 042857 1165 --------IYD-----------SDFNPHADIQAMNRAHRIGQSKRLLVYRLVVRASVE 1203 (1404)
Q Consensus 1165 --------i~D-----------sdWNP~~d~QAigRahRiGQ~k~V~VYrLvt~~TvE 1203 (1404)
.|| .+-++..++|++||++| |.... |.|++....+
T Consensus 464 Gl~~~~ViNyDydP~~gl~~~~~P~s~~syiQRiGRtGR-g~~G~---i~lvt~~e~~ 517 (666)
T 3o8b_A 464 NTCVTQTVDFSLDPTFTIETTTVPQDAVSRSQRRGRTGR-GRRGI---YRFVTPGERP 517 (666)
T ss_dssp CEEEEEEEECCCSSSCEEEEEEEECBHHHHHHHHTTBCS-SSCEE---EEESCCCCBC
T ss_pred CcccccccccccccccccccccCcCCHHHHHHHhccCCC-CCCCE---EEEEecchhh
Confidence 566 67788999999999999 76443 7888876543
No 66
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.59 E-value=7.7e-15 Score=155.01 Aligned_cols=124 Identities=19% Similarity=0.337 Sum_probs=105.4
Q ss_pred hhHHHHHHHHHHHHHHcCCeEEEEecchhHHHHHHHHHhhhcCCceEEEEeCCCCHHHHHHHHHHHhcCCCceEEEeecc
Q 042857 1070 SAKLTLLHSMLKVLYKEGHRVLIFSQMTKLLDILEDYLNIEFGPKTYERVDGSVSVGDRQAAITRFNQDKSRFVFLLSTR 1149 (1404)
Q Consensus 1070 SgKl~~L~kLL~kl~~~G~KVLIFSq~~~~LDiLed~L~~~f~g~~y~rLdGs~s~~eRq~~Id~Fn~~~s~~VfLLSTr 1149 (1404)
..|+.+|..++... .+.++|||++....++.|..+|... ++.+..++|+++..+|+.+++.|+++... +|++|.
T Consensus 19 ~~K~~~L~~ll~~~--~~~~~lVF~~~~~~~~~l~~~L~~~--~~~~~~~~g~~~~~~R~~~~~~f~~g~~~--vLvaT~ 92 (175)
T 2rb4_A 19 KDKYQALCNIYGSI--TIGQAIIFCQTRRNAKWLTVEMIQD--GHQVSLLSGELTVEQRASIIQRFRDGKEK--VLITTN 92 (175)
T ss_dssp HHHHHHHHHHHTTS--CCSEEEEECSCHHHHHHHHHHHHTT--TCCEEEECSSCCHHHHHHHHHHHHTTSCS--EEEECC
T ss_pred HhHHHHHHHHHHhC--CCCCEEEEECCHHHHHHHHHHHHHc--CCcEEEEeCCCCHHHHHHHHHHHHcCCCe--EEEEec
Confidence 34888888888764 5679999999999999999999876 78899999999999999999999976555 889999
Q ss_pred cccccccccCCCEEEEEcCC------CCHhHHHHHHHhhhccCCCCcEEEEEEeeCCC
Q 042857 1150 SCGLGINLATADTVIIYDSD------FNPHADIQAMNRAHRIGQSKRLLVYRLVVRAS 1201 (1404)
Q Consensus 1150 AgG~GINL~~AdtVIi~Dsd------WNP~~d~QAigRahRiGQ~k~V~VYrLvt~~T 1201 (1404)
++++|||++.+++||+||++ +++..++|++||++|.|+. -.+|.|++...
T Consensus 93 ~~~~Gid~~~~~~Vi~~d~p~~~~~~~~~~~~~qr~GR~gR~g~~--g~~~~~~~~~~ 148 (175)
T 2rb4_A 93 VCARGIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRFGKK--GLAFNMIEVDE 148 (175)
T ss_dssp SCCTTTCCTTEEEEEESSCCC--CCSCCHHHHHHHHCBC----CC--EEEEEEECGGG
T ss_pred chhcCCCcccCCEEEEeCCCCCccccCCHHHHHHHhcccccCCCC--ceEEEEEccch
Confidence 99999999999999999999 7779999999999999965 45577777664
No 67
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=99.59 E-value=3.4e-14 Score=179.49 Aligned_cols=107 Identities=21% Similarity=0.269 Sum_probs=93.4
Q ss_pred EEEEecchhHHHHHHHHHhhhcCCceEEEEeCCCCHHHHHHHHHHHhcCCCceEEEeecccccccccccCCCEEEEEcC-
Q 042857 1090 VLIFSQMTKLLDILEDYLNIEFGPKTYERVDGSVSVGDRQAAITRFNQDKSRFVFLLSTRSCGLGINLATADTVIIYDS- 1168 (1404)
Q Consensus 1090 VLIFSq~~~~LDiLed~L~~~f~g~~y~rLdGs~s~~eRq~~Id~Fn~~~s~~VfLLSTrAgG~GINL~~AdtVIi~Ds- 1168 (1404)
.+||+.....++.+...|... ++.+..+||+++..+|..+++.|+.+.+..-+|++|.+++.|||+ .+++||+++.
T Consensus 323 ~iIf~~s~~~ie~la~~L~~~--g~~v~~lHG~L~~~~R~~~~~~F~~~~g~~~VLVATdi~e~GlDi-~v~~VI~~~~~ 399 (677)
T 3rc3_A 323 DCIVCFSKNDIYSVSRQIEIR--GLESAVIYGSLPPGTKLAQAKKFNDPNDPCKILVATDAIGMGLNL-SIRRIIFYSLI 399 (677)
T ss_dssp EEEECSSHHHHHHHHHHHHHT--TCCCEEECTTSCHHHHHHHHHHHHCTTSSCCEEEECGGGGSSCCC-CBSEEEESCSB
T ss_pred CEEEEcCHHHHHHHHHHHHhc--CCCeeeeeccCCHHHHHHHHHHHHccCCCeEEEEeCcHHHCCcCc-CccEEEECCcc
Confidence 477888888999999999875 788999999999999999999999844445589999999999999 9999999999
Q ss_pred -------------CCCHhHHHHHHHhhhccCCC-CcEEEEEEeeC
Q 042857 1169 -------------DFNPHADIQAMNRAHRIGQS-KRLLVYRLVVR 1199 (1404)
Q Consensus 1169 -------------dWNP~~d~QAigRahRiGQ~-k~V~VYrLvt~ 1199 (1404)
++++..+.|+.||++|.|+. ..-.||++...
T Consensus 400 k~~~~~~G~~~~~p~s~~~~~QR~GRAGR~g~~g~~G~v~~l~~~ 444 (677)
T 3rc3_A 400 KPSINEKGERELEPITTSQALQIAGRAGRFSSRFKEGEVTTMNHE 444 (677)
T ss_dssp C-----------CBCCHHHHHHHHTTBTCTTSSCSSEEEEESSTT
T ss_pred ccccccCCccccccCCHHHHHHHhcCCCCCCCCCCCEEEEEEecc
Confidence 88999999999999999976 44567776544
No 68
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.59 E-value=8.8e-14 Score=191.00 Aligned_cols=321 Identities=17% Similarity=0.198 Sum_probs=186.5
Q ss_pred CCCHHHHHHHHHHHHhhccCCcEEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEeCCCCh-HHHHHHHHH-HCC--C
Q 042857 755 ALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLSTM-PNWLAEFAL-WAP--N 830 (1404)
Q Consensus 755 ~L~pyQlegVnwL~~~~~~~~~~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP~Sll-~nW~rEf~k-w~P--~ 830 (1404)
.+.|.|.+++.-++ ..+.+++++..+|.|||+.+...|...+... ..+.+|+|+|...+ .+-.++|.. +.+ +
T Consensus 926 ~fnpiQ~q~~~~l~---~~~~nvlv~APTGSGKTliaelail~~l~~~-~~~kavyi~P~raLa~q~~~~~~~~f~~~~g 1001 (1724)
T 4f92_B 926 FFNPIQTQVFNTVY---NSDDNVFVGAPTGSGKTICAEFAILRMLLQS-SEGRCVYITPMEALAEQVYMDWYEKFQDRLN 1001 (1724)
T ss_dssp BCCHHHHHHHHHHH---SCCSCEEEECCTTSCCHHHHHHHHHHHHHHC-TTCCEEEECSCHHHHHHHHHHHHHHHTTTSC
T ss_pred CCCHHHHHHHHHHh---cCCCcEEEEeCCCCCchHHHHHHHHHHHHhC-CCCEEEEEcChHHHHHHHHHHHHHHhchhcC
Confidence 58899999987764 4678999999999999998876666555443 33469999998655 555566654 332 5
Q ss_pred CcEEEEecchhHHHHHHHhhhccCCCCccccccCCCCceEEEeeHHHHHhhh------ccccCCCceEEEEccccccCCC
Q 042857 831 LNVVEYHGCAKARAIIRQYEWHASDPDNLNKKTSSYKFNVLLTTYEMILADS------SHLRGVPWEVLVVDEGHRLKNS 904 (1404)
Q Consensus 831 l~Vvvy~G~~~~R~~ir~~E~~~~~~~~~~~~~~~~kfdVvITTYe~l~~d~------~~L~~i~w~lVIVDEAHrlKN~ 904 (1404)
++|..++|+........ .+.+|+|+|++.+.... ..+. +..+||+||+|.+...
T Consensus 1002 ~~V~~ltGd~~~~~~~~------------------~~~~IiV~TPEkld~llr~~~~~~~l~--~v~lvViDE~H~l~d~ 1061 (1724)
T 4f92_B 1002 KKVVLLTGETSTDLKLL------------------GKGNIIISTPEKWDILSRRWKQRKNVQ--NINLFVVDEVHLIGGE 1061 (1724)
T ss_dssp CCEEECCSCHHHHHHHH------------------HHCSEEEECHHHHHHHHTTTTTCHHHH--SCSEEEECCGGGGGST
T ss_pred CEEEEEECCCCcchhhc------------------CCCCEEEECHHHHHHHHhCcccccccc--eeeEEEeechhhcCCC
Confidence 78999999765432211 14589999999874321 1233 3469999999999753
Q ss_pred ccHH-HHHHhh-------ccc-ccEEEEeccCCCCChHHHHHHhhhhCCCCCCChhHHHHHhccccchHHHHHHHHhhhh
Q 042857 905 GSKL-FSLLNS-------FSF-QHRVLLTGTPLQNNIGEMYNLLNFLQPASFPSLSSFEEKFNDLTTTQKVEELKKLVAP 975 (1404)
Q Consensus 905 ~Sk~-~~~L~~-------l~~-~~rLLLTGTPlqNnl~EL~sLL~fL~P~~f~s~~~F~~~f~d~~~~~~i~~L~~lL~p 975 (1404)
.... ...+.. +.. .+.++||||- .|..|+..-|..-....| .|...
T Consensus 1062 rg~~le~il~rl~~i~~~~~~~~riI~lSATl--~N~~dla~WL~~~~~~~~----~~~~~------------------- 1116 (1724)
T 4f92_B 1062 NGPVLEVICSRMRYISSQIERPIRIVALSSSL--SNAKDVAHWLGCSATSTF----NFHPN------------------- 1116 (1724)
T ss_dssp THHHHHHHHHHHHHHHHTTSSCCEEEEEESCB--TTHHHHHHHHTCCSTTEE----ECCGG-------------------
T ss_pred CCccHHHHHHHHHHHHhhcCCCceEEEEeCCC--CCHHHHHHHhCCCCCCeE----EeCCC-------------------
Confidence 3222 222222 222 3457899994 345554433321111100 00000
Q ss_pred hhhhhhHhhhhhcCC-CceEEEEEecCCHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHhCCCCCCCCCCC
Q 042857 976 HMLRRLKKDAMQNIP-PKTERMVPVELSSIQAEYYRAMLTKNYQILRNIGKGVAQQSMLNIVMQLRKVCNHPYLIPGTEP 1054 (1404)
Q Consensus 976 ~mLRR~K~dV~~~LP-pk~e~iV~V~LS~~Qk~~Y~~il~~n~~~L~~~~kg~~~~sllnilm~LRK~cnHP~L~~~~e~ 1054 (1404)
.-| |...++...........+. .+...
T Consensus 1117 ------------~RPvpL~~~i~~~~~~~~~~~~~-~~~~~--------------------------------------- 1144 (1724)
T 4f92_B 1117 ------------VRPVPLELHIQGFNISHTQTRLL-SMAKP--------------------------------------- 1144 (1724)
T ss_dssp ------------GCSSCEEEEEEEECCCSHHHHHH-TTHHH---------------------------------------
T ss_pred ------------CCCCCeEEEEEeccCCCchhhhh-hhcch---------------------------------------
Confidence 011 1222232222221111000 00000
Q ss_pred CCCcHHHHHHHHHhhhhHHHHHHHHHHHHHHcCCeEEEEecchhHHHHHHHHHhhh------------------------
Q 042857 1055 DSGSVEFLHEMRIKASAKLTLLHSMLKVLYKEGHRVLIFSQMTKLLDILEDYLNIE------------------------ 1110 (1404)
Q Consensus 1055 ~~~~~e~l~~~~i~~SgKl~~L~kLL~kl~~~G~KVLIFSq~~~~LDiLed~L~~~------------------------ 1110 (1404)
+...+.. ...++.+|||+........+...|...
T Consensus 1145 ---------------------~~~~i~~-~~~~~~~lVF~~sR~~~~~~A~~L~~~~~~~~~~~~~~~~~~~~l~~~l~~ 1202 (1724)
T 4f92_B 1145 ---------------------VYHAITK-HSPKKPVIVFVPSRKQTRLTAIDILTTCAADIQRQRFLHCTEKDLIPYLEK 1202 (1724)
T ss_dssp ---------------------HHHHHHH-HCSSSCEEEEESSHHHHHHHHHHHHHHHHHTTCTTTTBCSCHHHHHHHHTT
T ss_pred ---------------------HHHHHHH-hcCCCCeeeeCCCHHHHHHHHHHHHHHHhhccchhhhhcccHHHHHHHHhh
Confidence 0000000 122344555555443322222111000
Q ss_pred --------cCCceEEEEeCCCCHHHHHHHHHHHhcCCCceEEEeecccccccccccCCCEEEE----EcC------CCCH
Q 042857 1111 --------FGPKTYERVDGSVSVGDRQAAITRFNQDKSRFVFLLSTRSCGLGINLATADTVII----YDS------DFNP 1172 (1404)
Q Consensus 1111 --------f~g~~y~rLdGs~s~~eRq~~Id~Fn~~~s~~VfLLSTrAgG~GINL~~AdtVIi----~Ds------dWNP 1172 (1404)
.-...+...||+++..+|+.+.+.|.++.-. +|++|...+.||||++...||- ||. +.++
T Consensus 1203 ~~d~~L~~~l~~GIa~hHagL~~~~R~~VE~lF~~G~i~--VLvaT~tlA~GVnlPa~~VVI~~~~~~dg~~~~~~~~s~ 1280 (1724)
T 4f92_B 1203 LSDSTLKETLLNGVGYLHEGLSPMERRLVEQLFSSGAIQ--VVVASRSLCWGMNVAAHLVIIMDTQYYNGKIHAYVDYPI 1280 (1724)
T ss_dssp CCCHHHHHHHHTTEEEECTTSCHHHHHHHHHHHHHTSBC--EEEEEGGGSSSCCCCBSEEEEECSEEEETTTTEEEECCH
T ss_pred cccHHHHHHHhCCEEEECCCCCHHHHHHHHHHHHCCCCe--EEEEChHHHcCCCCCccEEEEecCccccCcccccCCCCH
Confidence 0012367799999999999999999887655 8899999999999996554441 332 4689
Q ss_pred hHHHHHHHhhhccCCCCcEEEEEEeeCC
Q 042857 1173 HADIQAMNRAHRIGQSKRLLVYRLVVRA 1200 (1404)
Q Consensus 1173 ~~d~QAigRahRiGQ~k~V~VYrLvt~~ 1200 (1404)
..+.|++|||+|.|....-.++.|+...
T Consensus 1281 ~~~~Qm~GRAGR~g~d~~G~avll~~~~ 1308 (1724)
T 4f92_B 1281 YDVLQMVGHANRPLQDDEGRCVIMCQGS 1308 (1724)
T ss_dssp HHHHHHHTTBCCTTTCSCEEEEEEEEGG
T ss_pred HHHHHhhccccCCCCCCceEEEEEecch
Confidence 9999999999999986665566555543
No 69
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=99.57 E-value=1.9e-14 Score=154.51 Aligned_cols=154 Identities=23% Similarity=0.175 Sum_probs=113.4
Q ss_pred CCCHHHHHHHHHHHHhhccCCcEEEEcCCCchHHHHHHHHHHHHHhhc---cCCCcEEEEeCC-CChHHHHHHHHHHCCC
Q 042857 755 ALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEF---KAKLPCLVLVPL-STMPNWLAEFALWAPN 830 (1404)
Q Consensus 755 ~L~pyQlegVnwL~~~~~~~~~~ILADEMGLGKTiqaIa~L~~L~~~~---~~~gP~LIVvP~-Sll~nW~rEf~kw~P~ 830 (1404)
.|+|||.+++..+.. +.++|+..++|.|||++++..+....... .....+||+||. .+..||.+++..+++.
T Consensus 23 ~~~~~Q~~~i~~~~~----~~~~li~~~TGsGKT~~~~~~~~~~l~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~ 98 (207)
T 2gxq_A 23 TPTPIQAAALPLALE----GKDLIGQARTGTGKTLAFALPIAERLAPSQERGRKPRALVLTPTRELALQVASELTAVAPH 98 (207)
T ss_dssp SCCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHHHCCCCCCTTCCCSEEEECSSHHHHHHHHHHHHHHCTT
T ss_pred CCCHHHHHHHHHHcC----CCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCcEEEEECCHHHHHHHHHHHHHHhhc
Confidence 699999999998765 78999999999999998776665544321 234579999999 5669999999999999
Q ss_pred CcEEEEecchhHHHHHHHhhhccCCCCccccccCCCCceEEEeeHHHHHhhh--ccccCCCceEEEEccccccCCC--cc
Q 042857 831 LNVVEYHGCAKARAIIRQYEWHASDPDNLNKKTSSYKFNVLLTTYEMILADS--SHLRGVPWEVLVVDEGHRLKNS--GS 906 (1404)
Q Consensus 831 l~Vvvy~G~~~~R~~ir~~E~~~~~~~~~~~~~~~~kfdVvITTYe~l~~d~--~~L~~i~w~lVIVDEAHrlKN~--~S 906 (1404)
+++..++|+........... ...+|+|+|++.+.... ..+....+++||+||||++.+. ..
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~---------------~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~~~~~~~~ 163 (207)
T 2gxq_A 99 LKVVAVYGGTGYGKQKEALL---------------RGADAVVATPGRALDYLRQGVLDLSRVEVAVLDEADEMLSMGFEE 163 (207)
T ss_dssp SCEEEECSSSCSHHHHHHHH---------------HCCSEEEECHHHHHHHHHHTSSCCTTCSEEEEESHHHHHHTTCHH
T ss_pred ceEEEEECCCChHHHHHHhh---------------CCCCEEEECHHHHHHHHHcCCcchhhceEEEEEChhHhhccchHH
Confidence 99999988765433222211 14689999999886543 2233456889999999998543 33
Q ss_pred HHHHHHhhcc-cccEEEEeccC
Q 042857 907 KLFSLLNSFS-FQHRVLLTGTP 927 (1404)
Q Consensus 907 k~~~~L~~l~-~~~rLLLTGTP 927 (1404)
.+...+..+. ....++||||+
T Consensus 164 ~~~~i~~~~~~~~~~i~~SAT~ 185 (207)
T 2gxq_A 164 EVEALLSATPPSRQTLLFSATL 185 (207)
T ss_dssp HHHHHHHTSCTTSEEEEECSSC
T ss_pred HHHHHHHhCCccCeEEEEEEec
Confidence 4555555554 34568899998
No 70
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=99.57 E-value=2.3e-14 Score=155.93 Aligned_cols=161 Identities=14% Similarity=0.128 Sum_probs=115.7
Q ss_pred CCCHHHHHHHHHHHHhhccCCcEEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEeCCC-ChHHHHHHHHHHC---CC
Q 042857 755 ALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLS-TMPNWLAEFALWA---PN 830 (1404)
Q Consensus 755 ~L~pyQlegVnwL~~~~~~~~~~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP~S-ll~nW~rEf~kw~---P~ 830 (1404)
.|+|||.+++..++. +.++|+..++|.|||+.++..+...........++|||||.. +..||.+++.++. |+
T Consensus 36 ~~~~~Q~~~i~~~~~----~~~~li~~~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~ 111 (220)
T 1t6n_A 36 HPSEVQHECIPQAIL----GMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPN 111 (220)
T ss_dssp CCCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHHHHHHHHHHHTTTSTT
T ss_pred CCCHHHHHHHHHHhC----CCCEEEECCCCCchhhhhhHHHHHhhhccCCCEEEEEEeCCHHHHHHHHHHHHHHHhhCCC
Confidence 499999999988765 688999999999999998877776654333344799999985 5589999999986 47
Q ss_pred CcEEEEecchhHHHHHHHhhhccCCCCccccccCCCCceEEEeeHHHHHhhh--ccccCCCceEEEEccccccCCC-c--
Q 042857 831 LNVVEYHGCAKARAIIRQYEWHASDPDNLNKKTSSYKFNVLLTTYEMILADS--SHLRGVPWEVLVVDEGHRLKNS-G-- 905 (1404)
Q Consensus 831 l~Vvvy~G~~~~R~~ir~~E~~~~~~~~~~~~~~~~kfdVvITTYe~l~~d~--~~L~~i~w~lVIVDEAHrlKN~-~-- 905 (1404)
+++..++|+........... ....+|+|+|++.+.... ..+..-.+++|||||||++... +
T Consensus 112 ~~v~~~~g~~~~~~~~~~~~--------------~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEah~~~~~~~~~ 177 (220)
T 1t6n_A 112 VKVAVFFGGLSIKKDEEVLK--------------KNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMR 177 (220)
T ss_dssp CCEEEESCCSCHHHHHHHHH--------------HSCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEESHHHHHSSHHHH
T ss_pred ceEEEEeCCCChHHHHHHHh--------------cCCCCEEEeCHHHHHHHHHhCCCCcccCCEEEEcCHHHHhcccCcH
Confidence 89999998765544333221 124589999999987542 2233346889999999998642 1
Q ss_pred cHHHHHHhhcc-cccEEEEeccCCCCChHH
Q 042857 906 SKLFSLLNSFS-FQHRVLLTGTPLQNNIGE 934 (1404)
Q Consensus 906 Sk~~~~L~~l~-~~~rLLLTGTPlqNnl~E 934 (1404)
..+...+..+. ....++|||||- +.+.+
T Consensus 178 ~~~~~i~~~~~~~~~~i~~SAT~~-~~~~~ 206 (220)
T 1t6n_A 178 RDVQEIFRMTPHEKQVMMFSATLS-KEIRP 206 (220)
T ss_dssp HHHHHHHHTSCSSSEEEEEESCCC-TTTHH
T ss_pred HHHHHHHHhCCCcCeEEEEEeecC-HHHHH
Confidence 22333444444 446788999984 33444
No 71
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=99.33 E-value=2.6e-16 Score=165.60 Aligned_cols=118 Identities=21% Similarity=0.355 Sum_probs=106.4
Q ss_pred hhHHHHHHHHHHHHHHcCCeEEEEecchhHHHHHHHHHhhhcCCceEEEEeCCCCHHHHHHHHHHHhcCCCceEEEeecc
Q 042857 1070 SAKLTLLHSMLKVLYKEGHRVLIFSQMTKLLDILEDYLNIEFGPKTYERVDGSVSVGDRQAAITRFNQDKSRFVFLLSTR 1149 (1404)
Q Consensus 1070 SgKl~~L~kLL~kl~~~G~KVLIFSq~~~~LDiLed~L~~~f~g~~y~rLdGs~s~~eRq~~Id~Fn~~~s~~VfLLSTr 1149 (1404)
+.|+.+|..++.. ..+.++|||++....++.|..+|... ++.+..++|.++..+|+.+++.|+++... +|++|.
T Consensus 15 ~~k~~~l~~ll~~--~~~~~~iVF~~~~~~~~~l~~~L~~~--~~~~~~~~g~~~~~~r~~~~~~f~~g~~~--vLvaT~ 88 (170)
T 2yjt_D 15 EHKTALLVHLLKQ--PEATRSIVFVRKRERVHELANWLREA--GINNCYLEGEMVQGKRNEAIKRLTEGRVN--VLVATD 88 (170)
Confidence 5788888888876 35679999999999999999999876 78899999999999999999999876544 899999
Q ss_pred cccccccccCCCEEEEEcCCCCHhHHHHHHHhhhccCCCCcEEE
Q 042857 1150 SCGLGINLATADTVIIYDSDFNPHADIQAMNRAHRIGQSKRLLV 1193 (1404)
Q Consensus 1150 AgG~GINL~~AdtVIi~DsdWNP~~d~QAigRahRiGQ~k~V~V 1193 (1404)
++++|||++.+++||+||++||+..++|++||++|.||...+.+
T Consensus 89 ~~~~Gid~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~ 132 (170)
T 2yjt_D 89 VAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAIS 132 (170)
Confidence 99999999999999999999999999999999999999776543
No 72
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.56 E-value=3.7e-13 Score=184.88 Aligned_cols=325 Identities=16% Similarity=0.174 Sum_probs=190.6
Q ss_pred CCCHHHHHHHHHHHHhhccCCcEEEEcCCCchHHHHHHHHHHHHHhhc--------cCCCcEEEEeCCCCh-HHHHHHHH
Q 042857 755 ALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEF--------KAKLPCLVLVPLSTM-PNWLAEFA 825 (1404)
Q Consensus 755 ~L~pyQlegVnwL~~~~~~~~~~ILADEMGLGKTiqaIa~L~~L~~~~--------~~~gP~LIVvP~Sll-~nW~rEf~ 825 (1404)
.|.|.|..++.-++ ..+.|.+++.++|.|||+.+...+...+... ...+.+|+|+|.-.| .+-.++|.
T Consensus 79 ~ln~iQs~~~~~al---~~~~N~lv~APTGsGKTlva~l~il~~l~~~~~~~~~~~~~~~k~lyiaP~kALa~e~~~~l~ 155 (1724)
T 4f92_B 79 TLNRIQSKLYRAAL---ETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQEMVGSFG 155 (1724)
T ss_dssp BCCHHHHHTHHHHH---TCCCCEEEECCTTSCCHHHHHHHHHHHHGGGCCTTSSCCTTSCEEEEECSSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH---cCCCcEEEEeCCcchHHHHHHHHHHHHHHhhccccccccCCCCEEEEECCHHHHHHHHHHHHH
Confidence 68999999987654 4688999999999999998876655444322 123468999998655 56677776
Q ss_pred HHCC--CCcEEEEecchhHHHHHHHhhhccCCCCccccccCCCCceEEEeeHHHHHhh------hccccCCCceEEEEcc
Q 042857 826 LWAP--NLNVVEYHGCAKARAIIRQYEWHASDPDNLNKKTSSYKFNVLLTTYEMILAD------SSHLRGVPWEVLVVDE 897 (1404)
Q Consensus 826 kw~P--~l~Vvvy~G~~~~R~~ir~~E~~~~~~~~~~~~~~~~kfdVvITTYe~l~~d------~~~L~~i~w~lVIVDE 897 (1404)
+.+. +++|..++|+.... .......+|+|||+|.+..- ...+. ...+|||||
T Consensus 156 ~~~~~~gi~V~~~tGd~~~~------------------~~~~~~~~IlVtTpEkld~llr~~~~~~~l~--~v~~vIiDE 215 (1724)
T 4f92_B 156 KRLATYGITVAELTGDHQLC------------------KEEISATQIIVCTPEKWDIITRKGGERTYTQ--LVRLIILDE 215 (1724)
T ss_dssp HHHTTTTCCEEECCSSCSSC------------------CTTGGGCSEEEECHHHHHHHTTSSTTHHHHT--TEEEEEETT
T ss_pred HHHhhCCCEEEEEECCCCCC------------------ccccCCCCEEEECHHHHHHHHcCCccchhhc--CcCEEEEec
Confidence 5543 56888888853210 01123578999999986321 11232 357999999
Q ss_pred ccccCCCc-cHH----HHHH---hhcc-cccEEEEeccCCCCChHHHHHHhhhhCCCCCCChhHHHHHhccccchHHHHH
Q 042857 898 GHRLKNSG-SKL----FSLL---NSFS-FQHRVLLTGTPLQNNIGEMYNLLNFLQPASFPSLSSFEEKFNDLTTTQKVEE 968 (1404)
Q Consensus 898 AHrlKN~~-Sk~----~~~L---~~l~-~~~rLLLTGTPlqNnl~EL~sLL~fL~P~~f~s~~~F~~~f~d~~~~~~i~~ 968 (1404)
+|.+...- ..+ .+.+ .... .-..++||||- .|+.|+-. ||.... . ...
T Consensus 216 vH~l~d~RG~~lE~~l~rl~~~~~~~~~~~riI~LSATl--~N~~dvA~---wL~~~~----~--~~~------------ 272 (1724)
T 4f92_B 216 IHLLHDDRGPVLEALVARAIRNIEMTQEDVRLIGLSATL--PNYEDVAT---FLRVDP----A--KGL------------ 272 (1724)
T ss_dssp GGGGGSTTHHHHHHHHHHHHHHHHHHTCCCEEEEEECSC--TTHHHHHH---HTTCCH----H--HHE------------
T ss_pred chhcCCccHHHHHHHHHHHHHHHHhCCCCCcEEEEeccc--CCHHHHHH---HhCCCC----C--CCe------------
Confidence 99886421 111 1111 1222 23568899994 34555433 232110 0 000
Q ss_pred HHHhhhhhhhhhhHhhhhhcCC-CceEEEEEecCCHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHhCCCC
Q 042857 969 LKKLVAPHMLRRLKKDAMQNIP-PKTERMVPVELSSIQAEYYRAMLTKNYQILRNIGKGVAQQSMLNIVMQLRKVCNHPY 1047 (1404)
Q Consensus 969 L~~lL~p~mLRR~K~dV~~~LP-pk~e~iV~V~LS~~Qk~~Y~~il~~n~~~L~~~~kg~~~~sllnilm~LRK~cnHP~ 1047 (1404)
+... . ..-| |...+.+.+.-....+. +..+ . .
T Consensus 273 -------~~~~---~---~~RPvpL~~~~~~~~~~~~~~~-~~~~------------------------~---~------ 305 (1724)
T 4f92_B 273 -------FYFD---N---SFRPVPLEQTYVGITEKKAIKR-FQIM------------------------N---E------ 305 (1724)
T ss_dssp -------EECC---G---GGCSSCEEEECCEECCCCHHHH-HHHH------------------------H---H------
T ss_pred -------EEEC---C---CCccCccEEEEeccCCcchhhh-hHHH------------------------H---H------
Confidence 0000 0 0011 11122222211100000 0000 0 0
Q ss_pred CCCCCCCCCCcHHHHHHHHHhhhhHHHHHHHHHHHHHHcCCeEEEEecchhHHHHHHHHHhhh-----------------
Q 042857 1048 LIPGTEPDSGSVEFLHEMRIKASAKLTLLHSMLKVLYKEGHRVLIFSQMTKLLDILEDYLNIE----------------- 1110 (1404)
Q Consensus 1048 L~~~~e~~~~~~e~l~~~~i~~SgKl~~L~kLL~kl~~~G~KVLIFSq~~~~LDiLed~L~~~----------------- 1110 (1404)
.+...+.+ ...++.+|||+..+...+-+..+|...
T Consensus 306 ---------------------------~~~~~v~~-~~~~~~~LVF~~sR~~~~~~A~~l~~~~~~~~~~~~~~~~~~~~ 357 (1724)
T 4f92_B 306 ---------------------------IVYEKIME-HAGKNQVLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSAS 357 (1724)
T ss_dssp ---------------------------HHHHHHTT-CCSSCCEEEECSSTTTTHHHHHHHHHHHHHTTSTTCCSSCCTTC
T ss_pred ---------------------------HHHHHHHH-HhcCCcEEEECCCHHHHHHHHHHHHHHHhhccchhhhcccchhH
Confidence 00000000 013567888877654433333332110
Q ss_pred ------------------cCCceEEEEeCCCCHHHHHHHHHHHhcCCCceEEEeecccccccccccCCCEEE----EEcC
Q 042857 1111 ------------------FGPKTYERVDGSVSVGDRQAAITRFNQDKSRFVFLLSTRSCGLGINLATADTVI----IYDS 1168 (1404)
Q Consensus 1111 ------------------f~g~~y~rLdGs~s~~eRq~~Id~Fn~~~s~~VfLLSTrAgG~GINL~~AdtVI----i~Ds 1168 (1404)
.-...+...||+++..+|..+.+.|.++.-. +|++|..++.||||++.+.|| +||+
T Consensus 358 ~~~~~~~~~~~~~~~l~~~l~~Gva~HHagL~~~~R~~vE~~F~~G~i~--vlvaTsTLa~GVNlPa~~vVI~~~~~~~~ 435 (1724)
T 4f92_B 358 TEVLRTEAEQCKNLELKDLLPYGFAIHHAGMTRVDRTLVEDLFADKHIQ--VLVSTATLAWGVNLPAHTVIIKGTQVYSP 435 (1724)
T ss_dssp SSHHHHTTSCCSTHHHHHHTTTTEEEECSSSCTHHHHHHHHHHHTTCCC--EEEECHHHHHHSCCCBSEEEEECCEEEET
T ss_pred HHHHHhhhcccccHHHHHHhhcCEEEEcCCCCHHHHHHHHHHHHCCCCe--EEEEcchhHhhCCCCCceEEEeCCEEecC
Confidence 0022367789999999999999999876655 889999999999999777766 3665
Q ss_pred C------CCHhHHHHHHHhhhccCCCCcEEEEEEeeCCCH
Q 042857 1169 D------FNPHADIQAMNRAHRIGQSKRLLVYRLVVRASV 1202 (1404)
Q Consensus 1169 d------WNP~~d~QAigRahRiGQ~k~V~VYrLvt~~Tv 1202 (1404)
. .++..+.|++|||+|.|....-.++.+...+..
T Consensus 436 ~~~~~~~ls~~~~~Qm~GRAGR~g~d~~G~~ii~~~~~~~ 475 (1724)
T 4f92_B 436 EKGRWTELGALDILQMLGRAGRPQYDTKGEGILITSHGEL 475 (1724)
T ss_dssp TTTEEEECCHHHHHHHHTTBSCTTTCSCEEEEEEEESTTC
T ss_pred cCCCcccCCHHHHHHhhhhccCCCCCCccEEEEEecchhH
Confidence 4 589999999999999997655556666666543
No 73
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=99.55 E-value=2.4e-14 Score=156.39 Aligned_cols=135 Identities=21% Similarity=0.300 Sum_probs=114.4
Q ss_pred hhhHHHHHHHHHHHHHHcCCeEEEEecchhHHHHHHHHHhhhcCCceEEEEeCCCCHHHHHHHHHHHhcCCCceEEEeec
Q 042857 1069 ASAKLTLLHSMLKVLYKEGHRVLIFSQMTKLLDILEDYLNIEFGPKTYERVDGSVSVGDRQAAITRFNQDKSRFVFLLST 1148 (1404)
Q Consensus 1069 ~SgKl~~L~kLL~kl~~~G~KVLIFSq~~~~LDiLed~L~~~f~g~~y~rLdGs~s~~eRq~~Id~Fn~~~s~~VfLLST 1148 (1404)
.+.|+..|.+++.. ..+.++|||++.....+.|..+|... ++.+..++|+++..+|+.+++.|+.+... +|++|
T Consensus 15 ~~~k~~~l~~ll~~--~~~~~~lVF~~~~~~~~~l~~~L~~~--~~~~~~lhg~~~~~~r~~~~~~f~~g~~~--vlvaT 88 (212)
T 3eaq_A 15 VRGRLEVLSDLLYV--ASPDRAMVFTRTKAETEEIAQGLLRL--GHPAQALHGDLSQGERERVLGAFRQGEVR--VLVAT 88 (212)
T ss_dssp TTSHHHHHHHHHHH--HCCSCEEEECSSHHHHHHHHHHHHHH--TCCEEEECSSSCHHHHHHHHHHHHSSSCC--EEEEC
T ss_pred HHHHHHHHHHHHHh--CCCCeEEEEeCCHHHHHHHHHHHHHc--CCCEEEEECCCCHHHHHHHHHHHHCCCCe--EEEec
Confidence 36799999999874 45789999999999999999999876 78899999999999999999999876555 79999
Q ss_pred ccccccccccCCCEEEEEcCCCCHhHHHHHHHhhhccCCCCcEEEEEEeeCCCHHHHHHHHHHHH
Q 042857 1149 RSCGLGINLATADTVIIYDSDFNPHADIQAMNRAHRIGQSKRLLVYRLVVRASVEERILQLAKKK 1213 (1404)
Q Consensus 1149 rAgG~GINL~~AdtVIi~DsdWNP~~d~QAigRahRiGQ~k~V~VYrLvt~~TvEE~Ilq~a~~K 1213 (1404)
.++++|||++.+++||+||++|++..+.|++||++|.|+.. .+|.|++.. |...+....+.
T Consensus 89 ~~~~~Gidi~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g--~~~~l~~~~--~~~~~~~i~~~ 149 (212)
T 3eaq_A 89 DVAARGLDIPQVDLVVHYRLPDRAEAYQHRSGRTGRAGRGG--RVVLLYGPR--ERRDVEALERA 149 (212)
T ss_dssp TTTTCSSSCCCBSEEEESSCCSSHHHHHHHHTTBCCCC--B--EEEEEECGG--GHHHHHHHHHH
T ss_pred ChhhcCCCCccCcEEEECCCCcCHHHHHHHhcccCCCCCCC--eEEEEEchh--HHHHHHHHHHH
Confidence 99999999999999999999999999999999999999764 456677664 44444444433
No 74
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.53 E-value=1.2e-14 Score=156.53 Aligned_cols=132 Identities=18% Similarity=0.213 Sum_probs=92.7
Q ss_pred CCCCCHHHHHHHHHHHHhhccCCcEEEEcCCCchHHHHHHHHHHHHHhhcc---CCCcEEEEeCCCC-hHH-HHHHHHHH
Q 042857 753 GGALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFK---AKLPCLVLVPLST-MPN-WLAEFALW 827 (1404)
Q Consensus 753 g~~L~pyQlegVnwL~~~~~~~~~~ILADEMGLGKTiqaIa~L~~L~~~~~---~~gP~LIVvP~Sl-l~n-W~rEf~kw 827 (1404)
+..|+|||.+++.+++. +.++|+..++|+|||++++.++..++.... ..+++|||||... +.| |.+++..|
T Consensus 31 ~~~l~~~Q~~~i~~~~~----~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~ 106 (216)
T 3b6e_A 31 ELQLRPYQMEVAQPALE----GKNIIICLPTGSGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPF 106 (216)
T ss_dssp CCCCCHHHHHHHHHHHT----TCCEEEECSCHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEESSHHHHHHHHHHTHHHH
T ss_pred CCCchHHHHHHHHHHhc----CCCEEEEcCCCCCHHHHHHHHHHHHHhhcccccCCCcEEEEECHHHHHHHHHHHHHHHH
Confidence 45899999999998764 689999999999999999988877654422 2458999999954 477 99999998
Q ss_pred CC-CCcEEEEecchhHHHHHHHhhhccCCCCccccccCCCCceEEEeeHHHHHhhhcc--------ccCCCceEEEEccc
Q 042857 828 AP-NLNVVEYHGCAKARAIIRQYEWHASDPDNLNKKTSSYKFNVLLTTYEMILADSSH--------LRGVPWEVLVVDEG 898 (1404)
Q Consensus 828 ~P-~l~Vvvy~G~~~~R~~ir~~E~~~~~~~~~~~~~~~~kfdVvITTYe~l~~d~~~--------L~~i~w~lVIVDEA 898 (1404)
.+ .+.+..++|........... ....+|+|+||+.+...... +....|++||||||
T Consensus 107 ~~~~~~v~~~~g~~~~~~~~~~~---------------~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iIiDEa 171 (216)
T 3b6e_A 107 LKKWYRVIGLSGDTQLKISFPEV---------------VKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDEC 171 (216)
T ss_dssp HTTTSCEEECCC---CCCCHHHH---------------HHHCSEEEEEHHHHHHHHHC-------CCCGGGCSEEEETTC
T ss_pred hccCceEEEEeCCcccchhHHhh---------------ccCCCEEEECHHHHHHHHhccCcccccccchhcccEEEEECc
Confidence 75 47888888754321111000 01468999999999765432 22346889999999
Q ss_pred cccCC
Q 042857 899 HRLKN 903 (1404)
Q Consensus 899 HrlKN 903 (1404)
|++..
T Consensus 172 h~~~~ 176 (216)
T 3b6e_A 172 HHTNK 176 (216)
T ss_dssp -----
T ss_pred hhhcc
Confidence 99964
No 75
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=99.53 E-value=6.8e-14 Score=153.79 Aligned_cols=153 Identities=15% Similarity=0.119 Sum_probs=112.2
Q ss_pred CCCHHHHHHHHHHHHhhccCCcEEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEeCCC-ChHHHHHHHHHHC---CC
Q 042857 755 ALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLS-TMPNWLAEFALWA---PN 830 (1404)
Q Consensus 755 ~L~pyQlegVnwL~~~~~~~~~~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP~S-ll~nW~rEf~kw~---P~ 830 (1404)
.|+|||.+++..+.. +.++|+..++|.|||++++..+...+.......++|||||.. +..||.+++..+. ++
T Consensus 46 ~~~~~Q~~~i~~~~~----~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~ 121 (230)
T 2oxc_A 46 RPSPVQLKAIPLGRC----GLDLIVQAKSGTGKTCVFSTIALDSLVLENLSTQILILAPTREIAVQIHSVITAIGIKMEG 121 (230)
T ss_dssp SCCHHHHHHHHHHHT----TCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTT
T ss_pred CCCHHHHHHHHHHhC----CCCEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEeCCHHHHHHHHHHHHHHhcccCC
Confidence 599999999998765 789999999999999986655544433333445799999984 6689999999986 47
Q ss_pred CcEEEEecchhHHHHHHHhhhccCCCCccccccCCCCceEEEeeHHHHHhhh--ccccCCCceEEEEccccccCCC---c
Q 042857 831 LNVVEYHGCAKARAIIRQYEWHASDPDNLNKKTSSYKFNVLLTTYEMILADS--SHLRGVPWEVLVVDEGHRLKNS---G 905 (1404)
Q Consensus 831 l~Vvvy~G~~~~R~~ir~~E~~~~~~~~~~~~~~~~kfdVvITTYe~l~~d~--~~L~~i~w~lVIVDEAHrlKN~---~ 905 (1404)
+++..++|+.......... ...+|+|+|++.+.... ..+....+++|||||||++-.. .
T Consensus 122 ~~~~~~~g~~~~~~~~~~~----------------~~~~Iiv~Tp~~l~~~~~~~~~~~~~~~~lViDEah~~~~~~~~~ 185 (230)
T 2oxc_A 122 LECHVFIGGTPLSQDKTRL----------------KKCHIAVGSPGRIKQLIELDYLNPGSIRLFILDEADKLLEEGSFQ 185 (230)
T ss_dssp CCEEEECTTSCHHHHHHHT----------------TSCSEEEECHHHHHHHHHTTSSCGGGCCEEEESSHHHHHSTTSSH
T ss_pred ceEEEEeCCCCHHHHHHhc----------------cCCCEEEECHHHHHHHHhcCCcccccCCEEEeCCchHhhcCcchH
Confidence 8899999876554332221 24689999999987642 2222335789999999998543 3
Q ss_pred cHHHHHHhhcc-cccEEEEeccC
Q 042857 906 SKLFSLLNSFS-FQHRVLLTGTP 927 (1404)
Q Consensus 906 Sk~~~~L~~l~-~~~rLLLTGTP 927 (1404)
..+...+..+. ....++||||+
T Consensus 186 ~~~~~i~~~~~~~~~~l~lSAT~ 208 (230)
T 2oxc_A 186 EQINWIYSSLPASKQMLAVSATY 208 (230)
T ss_dssp HHHHHHHHHSCSSCEEEEEESCC
T ss_pred HHHHHHHHhCCCCCeEEEEEecc
Confidence 44455566665 44578999996
No 76
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=99.52 E-value=1.3e-13 Score=147.91 Aligned_cols=154 Identities=16% Similarity=0.126 Sum_probs=113.2
Q ss_pred CCCHHHHHHHHHHHHhhccCCcEEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEeCCCC-hHHHHHHHHHHCC---C
Q 042857 755 ALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLST-MPNWLAEFALWAP---N 830 (1404)
Q Consensus 755 ~L~pyQlegVnwL~~~~~~~~~~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP~Sl-l~nW~rEf~kw~P---~ 830 (1404)
.|+|||.+++..+.. +.++|+..++|.|||+.++..+...........++|||||... ..||.+++..++. +
T Consensus 25 ~~~~~Q~~~i~~~~~----~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~ 100 (206)
T 1vec_A 25 KPSPIQEESIPIALS----GRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQVSQICIQVSKHMGG 100 (206)
T ss_dssp SCCHHHHHHHHHHHT----TCCEEEECCSSSTTHHHHHHHHHHHCCTTSCSCCEEEECSCHHHHHHHHHHHHHHTTTSSS
T ss_pred CCCHHHHHHHHHHcc----CCCEEEECCCCCchHHHHHHHHHHHhcccCCCeeEEEEeCcHHHHHHHHHHHHHHHhhcCC
Confidence 699999999988765 7899999999999999887666655433334457999999864 5899999998863 6
Q ss_pred CcEEEEecchhHHHHHHHhhhccCCCCccccccCCCCceEEEeeHHHHHhhhc--cccCCCceEEEEccccccCCCc--c
Q 042857 831 LNVVEYHGCAKARAIIRQYEWHASDPDNLNKKTSSYKFNVLLTTYEMILADSS--HLRGVPWEVLVVDEGHRLKNSG--S 906 (1404)
Q Consensus 831 l~Vvvy~G~~~~R~~ir~~E~~~~~~~~~~~~~~~~kfdVvITTYe~l~~d~~--~L~~i~w~lVIVDEAHrlKN~~--S 906 (1404)
+.+..++|+.......... ....+|+|+|++.+..... .+....+++||+||||++...+ .
T Consensus 101 ~~~~~~~g~~~~~~~~~~~---------------~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEah~~~~~~~~~ 165 (206)
T 1vec_A 101 AKVMATTGGTNLRDDIMRL---------------DDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQDFVQ 165 (206)
T ss_dssp CCEEEECSSSCHHHHHHHT---------------TSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEETHHHHTSTTTHH
T ss_pred ceEEEEeCCccHHHHHHhc---------------CCCCCEEEeCHHHHHHHHHcCCcCcccCCEEEEEChHHhHhhCcHH
Confidence 7888888877655443321 1256899999999865432 2233467899999999986533 3
Q ss_pred HHHHHHhhcc-cccEEEEeccC
Q 042857 907 KLFSLLNSFS-FQHRVLLTGTP 927 (1404)
Q Consensus 907 k~~~~L~~l~-~~~rLLLTGTP 927 (1404)
.+...+..+. ....++||||+
T Consensus 166 ~l~~i~~~~~~~~~~l~~SAT~ 187 (206)
T 1vec_A 166 IMEDIILTLPKNRQILLYSATF 187 (206)
T ss_dssp HHHHHHHHSCTTCEEEEEESCC
T ss_pred HHHHHHHhCCccceEEEEEeeC
Confidence 3344555554 45678999998
No 77
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=99.51 E-value=7.5e-14 Score=152.04 Aligned_cols=160 Identities=13% Similarity=0.063 Sum_probs=114.3
Q ss_pred CCCHHHHHHHHHHHHhhccCCcEEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEeCCC-ChHHHHHHHHHHCC----
Q 042857 755 ALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLS-TMPNWLAEFALWAP---- 829 (1404)
Q Consensus 755 ~L~pyQlegVnwL~~~~~~~~~~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP~S-ll~nW~rEf~kw~P---- 829 (1404)
.|+|||.+++..+.. +.++|+..++|.|||++++..+............+|||+|.. +..||.+++.+++.
T Consensus 26 ~~~~~Q~~~i~~~~~----~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~ 101 (219)
T 1q0u_A 26 KPTEIQERIIPGALR----GESMVGQSQTGTGKTHAYLLPIMEKIKPERAEVQAVITAPTRELATQIYHETLKITKFCPK 101 (219)
T ss_dssp SCCHHHHHHHHHHHH----TCCEEEECCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHHTTSCG
T ss_pred CCCHHHHHHHHHHhC----CCCEEEECCCCChHHHHHHHHHHHHHHhCcCCceEEEEcCcHHHHHHHHHHHHHHhhhccc
Confidence 589999999998876 789999999999999987766665544333445799999985 55899999998864
Q ss_pred --CCcEEEEecchhHHHHHHHhhhccCCCCccccccCCCCceEEEeeHHHHHhhhc--cccCCCceEEEEccccccCCCc
Q 042857 830 --NLNVVEYHGCAKARAIIRQYEWHASDPDNLNKKTSSYKFNVLLTTYEMILADSS--HLRGVPWEVLVVDEGHRLKNSG 905 (1404)
Q Consensus 830 --~l~Vvvy~G~~~~R~~ir~~E~~~~~~~~~~~~~~~~kfdVvITTYe~l~~d~~--~L~~i~w~lVIVDEAHrlKN~~ 905 (1404)
.+.+..++|+........ .-....+|+|+|++.+..... .+....+++|||||||++...+
T Consensus 102 ~~~~~~~~~~g~~~~~~~~~---------------~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~~~~~~ 166 (219)
T 1q0u_A 102 DRMIVARCLIGGTDKQKALE---------------KLNVQPHIVIGTPGRINDFIREQALDVHTAHILVVDEADLMLDMG 166 (219)
T ss_dssp GGCCCEEEECCCSHHHHTTC---------------CCSSCCSEEEECHHHHHHHHHTTCCCGGGCCEEEECSHHHHHHTT
T ss_pred ccceEEEEEeCCCCHHHHHH---------------HcCCCCCEEEeCHHHHHHHHHcCCCCcCcceEEEEcCchHHhhhC
Confidence 567888888765432110 011357899999998876322 2222357899999999986432
Q ss_pred --cHHHHHHhhcc-cccEEEEeccCCCCChHH
Q 042857 906 --SKLFSLLNSFS-FQHRVLLTGTPLQNNIGE 934 (1404)
Q Consensus 906 --Sk~~~~L~~l~-~~~rLLLTGTPlqNnl~E 934 (1404)
..+...+..+. ....++||||+ .+.+.+
T Consensus 167 ~~~~l~~i~~~~~~~~~~l~~SAT~-~~~~~~ 197 (219)
T 1q0u_A 167 FITDVDQIAARMPKDLQMLVFSATI-PEKLKP 197 (219)
T ss_dssp CHHHHHHHHHTSCTTCEEEEEESCC-CGGGHH
T ss_pred hHHHHHHHHHhCCcccEEEEEecCC-CHHHHH
Confidence 34555666665 34578999997 444444
No 78
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=99.51 E-value=1.1e-13 Score=152.21 Aligned_cols=153 Identities=16% Similarity=0.213 Sum_probs=111.9
Q ss_pred CCCHHHHHHHHHHHHhhccCCcEEEEcCCCchHHHHHHHHHHHHHhhc----cCCCcEEEEeCC-CChHHHHHHHHHHCC
Q 042857 755 ALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEF----KAKLPCLVLVPL-STMPNWLAEFALWAP 829 (1404)
Q Consensus 755 ~L~pyQlegVnwL~~~~~~~~~~ILADEMGLGKTiqaIa~L~~L~~~~----~~~gP~LIVvP~-Sll~nW~rEf~kw~P 829 (1404)
.|+|||.+++.++.. +.++|+..++|.|||++++..+....... .....+|||+|. .+..||.+++..+.+
T Consensus 47 ~~~~~Q~~~i~~~~~----~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~ 122 (236)
T 2pl3_A 47 LVTEIQKQTIGLALQ----GKDVLGAAKTGSGKTLAFLVPVLEALYRLQWTSTDGLGVLIISPTRELAYQTFEVLRKVGK 122 (236)
T ss_dssp BCCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHhC----CCCEEEEeCCCCcHHHHHHHHHHHHHHhhcccccCCceEEEEeCCHHHHHHHHHHHHHHhC
Confidence 689999999998865 78999999999999998877665543221 223469999998 456899999999985
Q ss_pred C--CcEEEEecchhHHHHHHHhhhccCCCCccccccCCCCceEEEeeHHHHHhhhc---cccCCCceEEEEccccccCCC
Q 042857 830 N--LNVVEYHGCAKARAIIRQYEWHASDPDNLNKKTSSYKFNVLLTTYEMILADSS---HLRGVPWEVLVVDEGHRLKNS 904 (1404)
Q Consensus 830 ~--l~Vvvy~G~~~~R~~ir~~E~~~~~~~~~~~~~~~~kfdVvITTYe~l~~d~~---~L~~i~w~lVIVDEAHrlKN~ 904 (1404)
. +.+..++|+.......... ...+|+|+|++.+..... .+....+++|||||||++.+.
T Consensus 123 ~~~~~~~~~~g~~~~~~~~~~~----------------~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~~~~~ 186 (236)
T 2pl3_A 123 NHDFSAGLIIGGKDLKHEAERI----------------NNINILVCTPGRLLQHMDETVSFHATDLQMLVLDEADRILDM 186 (236)
T ss_dssp TSSCCEEEECCC--CHHHHHHH----------------TTCSEEEECHHHHHHHHHHCSSCCCTTCCEEEETTHHHHHHT
T ss_pred CCCeeEEEEECCCCHHHHHHhC----------------CCCCEEEECHHHHHHHHHhcCCcccccccEEEEeChHHHhcC
Confidence 4 7888888876543322221 246899999999976432 233457889999999998653
Q ss_pred --ccHHHHHHhhccc-ccEEEEeccC
Q 042857 905 --GSKLFSLLNSFSF-QHRVLLTGTP 927 (1404)
Q Consensus 905 --~Sk~~~~L~~l~~-~~rLLLTGTP 927 (1404)
...+...+..+.. ...++||||+
T Consensus 187 ~~~~~~~~i~~~~~~~~~~l~~SAT~ 212 (236)
T 2pl3_A 187 GFADTMNAVIENLPKKRQTLLFSATQ 212 (236)
T ss_dssp TTHHHHHHHHHTSCTTSEEEEEESSC
T ss_pred CcHHHHHHHHHhCCCCCeEEEEEeeC
Confidence 3455566666653 3478999997
No 79
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.50 E-value=1.8e-12 Score=164.32 Aligned_cols=124 Identities=19% Similarity=0.174 Sum_probs=107.6
Q ss_pred hHHHHHHHHHHHHHHcCCeEEEEecchhHHHHHHHHHhhhcCCceEEEEeCCCCHHHHHHHHHHHhcCCCceEEEeeccc
Q 042857 1071 AKLTLLHSMLKVLYKEGHRVLIFSQMTKLLDILEDYLNIEFGPKTYERVDGSVSVGDRQAAITRFNQDKSRFVFLLSTRS 1150 (1404)
Q Consensus 1071 gKl~~L~kLL~kl~~~G~KVLIFSq~~~~LDiLed~L~~~f~g~~y~rLdGs~s~~eRq~~Id~Fn~~~s~~VfLLSTrA 1150 (1404)
+++..|...|......|.+||||+......+.|..+|... |+.+..+||.++..+|.++++.|..+... +|++|.+
T Consensus 423 ~~~~~Ll~~l~~~~~~~~~vlVf~~t~~~ae~L~~~L~~~--gi~~~~lh~~~~~~~R~~~~~~f~~g~~~--VLvaT~~ 498 (664)
T 1c4o_A 423 NQILDLMEGIRERAARGERTLVTVLTVRMAEELTSFLVEH--GIRARYLHHELDAFKRQALIRDLRLGHYD--CLVGINL 498 (664)
T ss_dssp THHHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHHHHT--TCCEEEECTTCCHHHHHHHHHHHHTTSCS--EEEESCC
T ss_pred chHHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhc--CCCceeecCCCCHHHHHHHHHHhhcCCce--EEEccCh
Confidence 4666666777777778999999999999999999999976 78888899999999999999999865544 8999999
Q ss_pred ccccccccCCCEEEEEcC-----CCCHhHHHHHHHhhhccCCCCcEEEEEEeeCCC
Q 042857 1151 CGLGINLATADTVIIYDS-----DFNPHADIQAMNRAHRIGQSKRLLVYRLVVRAS 1201 (1404)
Q Consensus 1151 gG~GINL~~AdtVIi~Ds-----dWNP~~d~QAigRahRiGQ~k~V~VYrLvt~~T 1201 (1404)
+++|||++.++.||++|. ++++..++|++||++|.|. -.++.|+...+
T Consensus 499 l~~GlDip~v~lVI~~d~d~~G~p~s~~~~iQr~GRagR~~~---G~~i~~~~~~~ 551 (664)
T 1c4o_A 499 LREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNAR---GEVWLYADRVS 551 (664)
T ss_dssp CCTTCCCTTEEEEEETTTTSCSGGGSHHHHHHHHGGGTTSTT---CEEEEECSSCC
T ss_pred hhcCccCCCCCEEEEeCCcccCCCCCHHHHHHHHCccCcCCC---CEEEEEEcCCC
Confidence 999999999999999998 8999999999999999863 23555666654
No 80
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=99.49 E-value=6.3e-13 Score=165.06 Aligned_cols=117 Identities=16% Similarity=0.167 Sum_probs=98.7
Q ss_pred hhhHHHHHHHHHHHHHHcCCeEEEEecchhHHHHHHHHHhhhcCCceEEEEeCCCCHHHHHHHHHHHhcCCCceEEEeec
Q 042857 1069 ASAKLTLLHSMLKVLYKEGHRVLIFSQMTKLLDILEDYLNIEFGPKTYERVDGSVSVGDRQAAITRFNQDKSRFVFLLST 1148 (1404)
Q Consensus 1069 ~SgKl~~L~kLL~kl~~~G~KVLIFSq~~~~LDiLed~L~~~f~g~~y~rLdGs~s~~eRq~~Id~Fn~~~s~~VfLLST 1148 (1404)
...|+.+|...+......|.+||||+......+.|...|... |+.+..++|.....+|.-+..+|. ... ++|+|
T Consensus 456 ~~eK~~al~~~I~~~~~~gqpVLVFt~S~e~sE~Ls~~L~~~--Gi~~~vLhgkq~~rE~~ii~~ag~--~g~--VtVAT 529 (822)
T 3jux_A 456 QKEKYEKIVEEIEKRYKKGQPVLVGTTSIEKSELLSSMLKKK--GIPHQVLNAKYHEKEAEIVAKAGQ--KGM--VTIAT 529 (822)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCEEEEESSHHHHHHHHHHHHTT--TCCCEEECSCHHHHHHHHHHHHHS--TTC--EEEEE
T ss_pred HHHHHHHHHHHHHHHhhCCCCEEEEECCHHHHHHHHHHHHHC--CCCEEEeeCCchHHHHHHHHhCCC--CCe--EEEEc
Confidence 457999999999998888999999999999999999999976 889999999844334333334443 223 89999
Q ss_pred cccccccccc--------CCCEEEEEcCCCCHhHHHHHHHhhhccCCCCcE
Q 042857 1149 RSCGLGINLA--------TADTVIIYDSDFNPHADIQAMNRAHRIGQSKRL 1191 (1404)
Q Consensus 1149 rAgG~GINL~--------~AdtVIi~DsdWNP~~d~QAigRahRiGQ~k~V 1191 (1404)
..+|+|+++. ...+||.+|.+-++..|.|++||++|.|+....
T Consensus 530 dmAgRGtDI~lg~~V~~~GglhVInte~Pes~r~y~qriGRTGRqG~~G~a 580 (822)
T 3jux_A 530 NMAGRGTDIKLGPGVAELGGLCIIGTERHESRRIDNQLRGRAGRQGDPGES 580 (822)
T ss_dssp TTTTTTCCCCCCTTTTTTTSCEEEESSCCSSHHHHHHHHTTSSCSSCCCEE
T ss_pred chhhCCcCccCCcchhhcCCCEEEecCCCCCHHHHHHhhCccccCCCCeeE
Confidence 9999999997 567999999999999999999999999987654
No 81
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=99.49 E-value=1.9e-13 Score=152.59 Aligned_cols=154 Identities=19% Similarity=0.172 Sum_probs=114.5
Q ss_pred CCCHHHHHHHHHHHHhhccCCcEEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEeCCC-ChHHHHHHHHHHCC--CC
Q 042857 755 ALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLS-TMPNWLAEFALWAP--NL 831 (1404)
Q Consensus 755 ~L~pyQlegVnwL~~~~~~~~~~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP~S-ll~nW~rEf~kw~P--~l 831 (1404)
.|+|||.+++..++. ++++|+..++|.|||++++..+...+........+||++|.. +..||.++|.+++. ++
T Consensus 65 ~~~~~Q~~~i~~i~~----~~~~lv~a~TGsGKT~~~~~~il~~l~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~ 140 (249)
T 3ber_A 65 KPTKIQIEAIPLALQ----GRDIIGLAETGSGKTGAFALPILNALLETPQRLFALVLTPTRELAFQISEQFEALGSSIGV 140 (249)
T ss_dssp SCCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHHHHHHSCCSSCEEEECSSHHHHHHHHHHHHHHHGGGTC
T ss_pred CCCHHHHHHHHHHhC----CCCEEEEcCCCCCchhHhHHHHHHHHhcCCCCceEEEEeCCHHHHHHHHHHHHHHhccCCe
Confidence 699999999988765 789999999999999998777766554444455799999995 45899999999865 57
Q ss_pred cEEEEecchhHHHHHHHhhhccCCCCccccccCCCCceEEEeeHHHHHhhhc---cccCCCceEEEEccccccCCC--cc
Q 042857 832 NVVEYHGCAKARAIIRQYEWHASDPDNLNKKTSSYKFNVLLTTYEMILADSS---HLRGVPWEVLVVDEGHRLKNS--GS 906 (1404)
Q Consensus 832 ~Vvvy~G~~~~R~~ir~~E~~~~~~~~~~~~~~~~kfdVvITTYe~l~~d~~---~L~~i~w~lVIVDEAHrlKN~--~S 906 (1404)
.+..++|+........... ...+|+|+|++.+..... .+.--.+++|||||||++.+. ..
T Consensus 141 ~~~~~~g~~~~~~~~~~~~---------------~~~~I~v~Tp~~l~~~l~~~~~~~l~~~~~lViDEah~l~~~~~~~ 205 (249)
T 3ber_A 141 QSAVIVGGIDSMSQSLALA---------------KKPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFET 205 (249)
T ss_dssp CEEEECTTSCHHHHHHHHH---------------TCCSEEEECHHHHHHHHHHSTTCCCTTCCEEEECSHHHHHHTTCHH
T ss_pred eEEEEECCCChHHHHHHhc---------------CCCCEEEECHHHHHHHHHcCCCcCccccCEEEEcChhhhhccChHH
Confidence 8888888765443322211 256899999999876432 233346889999999998653 23
Q ss_pred HHHHHHhhcc-cccEEEEeccC
Q 042857 907 KLFSLLNSFS-FQHRVLLTGTP 927 (1404)
Q Consensus 907 k~~~~L~~l~-~~~rLLLTGTP 927 (1404)
.+...+..+. ....++||||+
T Consensus 206 ~l~~i~~~~~~~~~~l~~SAT~ 227 (249)
T 3ber_A 206 EVDKILKVIPRDRKTFLFSATM 227 (249)
T ss_dssp HHHHHHHSSCSSSEEEEEESSC
T ss_pred HHHHHHHhCCCCCeEEEEeccC
Confidence 4455556664 44568899998
No 82
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=99.48 E-value=2.4e-13 Score=148.04 Aligned_cols=153 Identities=14% Similarity=0.112 Sum_probs=106.5
Q ss_pred CCCHHHHHHHHHHHHhhccCCcEEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEeCCC-ChHHHHHHHHHHCC--CC
Q 042857 755 ALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLS-TMPNWLAEFALWAP--NL 831 (1404)
Q Consensus 755 ~L~pyQlegVnwL~~~~~~~~~~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP~S-ll~nW~rEf~kw~P--~l 831 (1404)
.|+|||.+++..+.. +.++|+..++|.|||++++..+...+.......++||++|.. +..||.+++..+++ ++
T Consensus 36 ~~~~~Q~~~i~~~~~----~~~~lv~~pTGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~ 111 (224)
T 1qde_A 36 EPSAIQQRAIMPIIE----GHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMALAFHMDI 111 (224)
T ss_dssp SCCHHHHHHHHHHHT----TCCEEEECCTTSSHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHTTTSCC
T ss_pred CCcHHHHHHHHHHhc----CCCEEEECCCCCcHHHHHHHHHHHHHhccCCCceEEEEECCHHHHHHHHHHHHHHhcccCc
Confidence 699999999988765 688999999999999986555544433334445899999995 55899999999975 57
Q ss_pred cEEEEecchhHHHHHHHhhhccCCCCccccccCCCCceEEEeeHHHHHhhh--ccccCCCceEEEEccccccCCC--ccH
Q 042857 832 NVVEYHGCAKARAIIRQYEWHASDPDNLNKKTSSYKFNVLLTTYEMILADS--SHLRGVPWEVLVVDEGHRLKNS--GSK 907 (1404)
Q Consensus 832 ~Vvvy~G~~~~R~~ir~~E~~~~~~~~~~~~~~~~kfdVvITTYe~l~~d~--~~L~~i~w~lVIVDEAHrlKN~--~Sk 907 (1404)
.+..++|+........ .....+|+|+|++.+.... ..+....+++|||||||++... ...
T Consensus 112 ~~~~~~g~~~~~~~~~----------------~~~~~~iiv~Tp~~l~~~~~~~~~~~~~~~~iViDEah~~~~~~~~~~ 175 (224)
T 1qde_A 112 KVHACIGGTSFVEDAE----------------GLRDAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEMLSSGFKEQ 175 (224)
T ss_dssp CEEEECC--------------------------CTTCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHHHHTTCHHH
T ss_pred eEEEEeCCcchHHHHh----------------cCCCCCEEEECHHHHHHHHHhCCcchhhCcEEEEcChhHHhhhhhHHH
Confidence 7888888654332111 1123789999999987542 2233346889999999998543 233
Q ss_pred HHHHHhhccc-ccEEEEeccC
Q 042857 908 LFSLLNSFSF-QHRVLLTGTP 927 (1404)
Q Consensus 908 ~~~~L~~l~~-~~rLLLTGTP 927 (1404)
+...+..+.. ...++||||+
T Consensus 176 l~~i~~~~~~~~~~i~lSAT~ 196 (224)
T 1qde_A 176 IYQIFTLLPPTTQVVLLSATM 196 (224)
T ss_dssp HHHHHHHSCTTCEEEEEESSC
T ss_pred HHHHHHhCCccCeEEEEEeec
Confidence 4555555543 4468899998
No 83
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=99.45 E-value=9.2e-14 Score=159.84 Aligned_cols=125 Identities=21% Similarity=0.297 Sum_probs=107.3
Q ss_pred hhhHHHHHHHHHHHHHHcCCeEEEEecchhHHHHHHHHHhhhcCCceEEEEeCCCCHHHHHHHHHHHhcCCCceEEEeec
Q 042857 1069 ASAKLTLLHSMLKVLYKEGHRVLIFSQMTKLLDILEDYLNIEFGPKTYERVDGSVSVGDRQAAITRFNQDKSRFVFLLST 1148 (1404)
Q Consensus 1069 ~SgKl~~L~kLL~kl~~~G~KVLIFSq~~~~LDiLed~L~~~f~g~~y~rLdGs~s~~eRq~~Id~Fn~~~s~~VfLLST 1148 (1404)
.+.|+.+|.+++... .+.++|||++.....+.|...|... ++.+..+||.+++.+|+.+++.|+.+... +|++|
T Consensus 12 ~~~K~~~L~~ll~~~--~~~~~LVF~~t~~~~~~l~~~L~~~--g~~~~~lhg~l~~~~r~~~~~~f~~g~~~--vLVaT 85 (300)
T 3i32_A 12 VRGRLEVLSDLLYVA--SPDRAMVFTRTKAETEEIAQGLLRL--GHPAQALHGDMSQGERERVMGAFRQGEVR--VLVAT 85 (300)
T ss_dssp SSSHHHHHHHHHHHH--CCSSEEEECSSHHHHHHHHHHHHTT--TCCEEEECSCCCTHHHHHHHHHHHHTSCC--EEEEC
T ss_pred HHHHHHHHHHHHHhc--CCCCEEEEECCHHHHHHHHHHHHhC--CCCEEEEeCCCCHHHHHHHHHHhhcCCce--EEEEe
Confidence 357899999998764 4889999999999999999999876 78899999999999999999999877655 89999
Q ss_pred ccccccccccCCCEEEEEcCCCCHhHHHHHHHhhhccCCCCcEEEEEEeeCCC
Q 042857 1149 RSCGLGINLATADTVIIYDSDFNPHADIQAMNRAHRIGQSKRLLVYRLVVRAS 1201 (1404)
Q Consensus 1149 rAgG~GINL~~AdtVIi~DsdWNP~~d~QAigRahRiGQ~k~V~VYrLvt~~T 1201 (1404)
.++++|||++.+++||+||++|++..+.|++||++|.|+.. .+|.|++...
T Consensus 86 ~va~~Gidi~~v~~VI~~d~p~s~~~y~Qr~GRagR~g~~G--~~i~l~~~~e 136 (300)
T 3i32_A 86 DVAARGLDIPQVDLVVHYRMPDRAEAYQHRSGRTGRAGRGG--RVVLLYGPRE 136 (300)
T ss_dssp STTTCSTTCCCCSEEEESSCCSSTTHHHHHHTCCC-----C--EEEEEECSST
T ss_pred chhhcCccccceeEEEEcCCCCCHHHHHHHccCcCcCCCCc--eEEEEeChHH
Confidence 99999999999999999999999999999999999999864 4566777653
No 84
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=99.45 E-value=5.7e-13 Score=148.23 Aligned_cols=154 Identities=18% Similarity=0.201 Sum_probs=110.8
Q ss_pred CCCHHHHHHHHHHHHhhccCCcEEEEcCCCchHHHHHHHHHHHHHhhcc---------CCCcEEEEeCCC-ChHHHHHHH
Q 042857 755 ALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFK---------AKLPCLVLVPLS-TMPNWLAEF 824 (1404)
Q Consensus 755 ~L~pyQlegVnwL~~~~~~~~~~ILADEMGLGKTiqaIa~L~~L~~~~~---------~~gP~LIVvP~S-ll~nW~rEf 824 (1404)
.|+|||.+++..++. +.++|+..++|.|||+.++..+...+.... ....+|||||.. +..||.+++
T Consensus 45 ~~~~~Q~~~i~~i~~----~~~~l~~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~ 120 (253)
T 1wrb_A 45 RPTPIQKNAIPAILE----HRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTAYPKCLILAPTRELAIQILSES 120 (253)
T ss_dssp SCCHHHHHHHHHHHT----TCCEEEECCTTSSHHHHHHHHHHHHHHTTCC------CCBCCSEEEECSSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhC----CCCEEEECCCCChHHHHHHHHHHHHHHhhccccccccccCCceEEEEECCHHHHHHHHHHH
Confidence 699999999988765 789999999999999988776665543321 224799999985 558999999
Q ss_pred HHHCC--CCcEEEEecchhHHHHHHHhhhccCCCCccccccCCCCceEEEeeHHHHHhhhc--cccCCCceEEEEccccc
Q 042857 825 ALWAP--NLNVVEYHGCAKARAIIRQYEWHASDPDNLNKKTSSYKFNVLLTTYEMILADSS--HLRGVPWEVLVVDEGHR 900 (1404)
Q Consensus 825 ~kw~P--~l~Vvvy~G~~~~R~~ir~~E~~~~~~~~~~~~~~~~kfdVvITTYe~l~~d~~--~L~~i~w~lVIVDEAHr 900 (1404)
..+.. .+.+..++|+.......+.. ....+|+|+|++.+..... .+.--.+.+|||||||+
T Consensus 121 ~~~~~~~~~~~~~~~g~~~~~~~~~~~---------------~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~ 185 (253)
T 1wrb_A 121 QKFSLNTPLRSCVVYGGADTHSQIREV---------------QMGCHLLVATPGRLVDFIEKNKISLEFCKYIVLDEADR 185 (253)
T ss_dssp HHHHTTSSCCEEEECSSSCSHHHHHHH---------------SSCCSEEEECHHHHHHHHHTTSBCCTTCCEEEEETHHH
T ss_pred HHHhccCCceEEEEECCCCHHHHHHHh---------------CCCCCEEEECHHHHHHHHHcCCCChhhCCEEEEeCHHH
Confidence 99865 46778888766544333322 1256899999999976432 22334578999999999
Q ss_pred cCCC--ccHHHHHHhhcc-----cccEEEEeccC
Q 042857 901 LKNS--GSKLFSLLNSFS-----FQHRVLLTGTP 927 (1404)
Q Consensus 901 lKN~--~Sk~~~~L~~l~-----~~~rLLLTGTP 927 (1404)
+... ...+...+..+. ....++|||||
T Consensus 186 ~~~~~~~~~~~~i~~~~~~~~~~~~q~l~~SAT~ 219 (253)
T 1wrb_A 186 MLDMGFEPQIRKIIEESNMPSGINRQTLMFSATF 219 (253)
T ss_dssp HHHTTCHHHHHHHHHSSCCCCGGGCEEEEEESSC
T ss_pred HHhCchHHHHHHHHhhccCCCCCCcEEEEEEEeC
Confidence 8543 334555555432 23478999997
No 85
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=99.45 E-value=4.9e-13 Score=147.72 Aligned_cols=155 Identities=16% Similarity=0.106 Sum_probs=107.9
Q ss_pred CCCHHHHHHHHHHHHhhccCCcEEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEeCCC-ChHHHHHHHHHHCC--CC
Q 042857 755 ALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLS-TMPNWLAEFALWAP--NL 831 (1404)
Q Consensus 755 ~L~pyQlegVnwL~~~~~~~~~~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP~S-ll~nW~rEf~kw~P--~l 831 (1404)
.|+|||.+++..++. +.++|+..++|.|||++++..+...+.......++|||+|.. +..||.+++..++. .+
T Consensus 52 ~~~~~Q~~ai~~i~~----~~~~li~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~ 127 (237)
T 3bor_A 52 KPSAIQQRAIIPCIK----GYDVIAQAQSGTGKTATFAISILQQLEIEFKETQALVLAPTRELAQQIQKVILALGDYMGA 127 (237)
T ss_dssp SCCHHHHHHHHHHHT----TCCEEECCCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTTTC
T ss_pred CCCHHHHHHHHHHhC----CCCEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEECcHHHHHHHHHHHHHHhhhcCc
Confidence 599999999988765 789999999999999987766665543333445799999985 55899999999975 46
Q ss_pred cEEEEecchhHHHHHHHhhhccCCCCccccccCCCCceEEEeeHHHHHhhh--ccccCCCceEEEEccccccCC--CccH
Q 042857 832 NVVEYHGCAKARAIIRQYEWHASDPDNLNKKTSSYKFNVLLTTYEMILADS--SHLRGVPWEVLVVDEGHRLKN--SGSK 907 (1404)
Q Consensus 832 ~Vvvy~G~~~~R~~ir~~E~~~~~~~~~~~~~~~~kfdVvITTYe~l~~d~--~~L~~i~w~lVIVDEAHrlKN--~~Sk 907 (1404)
.+..+.|+.......... .....+|+|+|++.+.... ..+..-.+++|||||||++.. ....
T Consensus 128 ~~~~~~g~~~~~~~~~~l--------------~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~~~~~~~~~~ 193 (237)
T 3bor_A 128 TCHACIGGTNVRNEMQKL--------------QAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEMLSRGFKDQ 193 (237)
T ss_dssp CEEEECC---------------------------CCCSEEEECHHHHHHHHHTTSSCSTTCCEEEEESHHHHHHTTCHHH
T ss_pred eEEEEECCCchHHHHHHH--------------hcCCCCEEEECHHHHHHHHHhCCcCcccCcEEEECCchHhhccCcHHH
Confidence 777777765433222111 1124789999999876542 223334678999999999843 3445
Q ss_pred HHHHHhhccc-ccEEEEeccC
Q 042857 908 LFSLLNSFSF-QHRVLLTGTP 927 (1404)
Q Consensus 908 ~~~~L~~l~~-~~rLLLTGTP 927 (1404)
+...+..+.. ...++||||+
T Consensus 194 l~~i~~~~~~~~~~i~~SAT~ 214 (237)
T 3bor_A 194 IYEIFQKLNTSIQVVLLSATM 214 (237)
T ss_dssp HHHHHHHSCTTCEEEEECSSC
T ss_pred HHHHHHhCCCCCeEEEEEEec
Confidence 6666666654 3558899998
No 86
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=99.39 E-value=3e-13 Score=126.66 Aligned_cols=55 Identities=29% Similarity=0.738 Sum_probs=50.0
Q ss_pred CCCCcccccccccccCCCceEEcCCCCCcccccccCCCCCCCCCCCccCcccccc
Q 042857 68 KKGNDGYYYECVICDLGGNLLCCDSCPRTYHLQCLDPPLKRIPNGKWQCPKCTQK 122 (1404)
Q Consensus 68 ~~~~d~~~~~C~~C~~~g~ll~Cd~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~ 122 (1404)
....+.++.+|.+|+++|+||+||.|+++||++|+.|||..+|.|+|+|+.|...
T Consensus 18 ~~~~d~n~~~C~vC~~~g~LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~ 72 (88)
T 1fp0_A 18 FGTLDDSATICRVCQKPGDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 72 (88)
T ss_dssp CCSSSSSSSCCSSSCSSSCCEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCC
T ss_pred ccccCCCCCcCcCcCCCCCEEECCCCCCceecccCCCCCCCCcCCCcCCccccCC
Confidence 3445667778999999999999999999999999999999999999999999865
No 87
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=99.37 E-value=2.7e-13 Score=119.41 Aligned_cols=53 Identities=55% Similarity=1.364 Sum_probs=49.3
Q ss_pred CCcccccccccccCCCceEEcCCCCCcccccccCCCCCCCCCCCccCcccccc
Q 042857 70 GNDGYYYECVICDLGGNLLCCDSCPRTYHLQCLDPPLKRIPNGKWQCPKCTQK 122 (1404)
Q Consensus 70 ~~d~~~~~C~~C~~~g~ll~Cd~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~ 122 (1404)
+.+.++.+|.+|+++|+||+||.|+++||++|+.|||..+|.|+|+|+.|..+
T Consensus 4 ~~d~~~~~C~vC~~~g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~ 56 (61)
T 1mm2_A 4 GSDHHMEFCRVCKDGGELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCP 56 (61)
T ss_dssp CSCSSCSSCTTTCCCSSCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTT
T ss_pred cccCCCCcCCCCCCCCCEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCc
Confidence 45667888999999999999999999999999999999999999999999865
No 88
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=99.37 E-value=5.7e-12 Score=137.86 Aligned_cols=154 Identities=18% Similarity=0.147 Sum_probs=106.9
Q ss_pred CCCHHHHHHHHHHHHhhccCCcEEEEcCCCchHHHHHHHHHHHHHhhc------cCCCcEEEEeCCCCh-HHHHHHHHHH
Q 042857 755 ALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEF------KAKLPCLVLVPLSTM-PNWLAEFALW 827 (1404)
Q Consensus 755 ~L~pyQlegVnwL~~~~~~~~~~ILADEMGLGKTiqaIa~L~~L~~~~------~~~gP~LIVvP~Sll-~nW~rEf~kw 827 (1404)
.|+|||.+++..+.. +.++|+..++|.|||+.++..+...+... .....+|||+|...+ .||.+++..+
T Consensus 42 ~~~~~Q~~~i~~~~~----~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 117 (228)
T 3iuy_A 42 KPTPIQSQAWPIILQ----GIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISREQRNGPGMLVLTPTRELALHVEAECSKY 117 (228)
T ss_dssp SCCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHHHHC---------CCCSEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhC----CCCEEEECCCCChHHHHHHHHHHHHHHhccchhhccCCCcEEEEeCCHHHHHHHHHHHHHh
Confidence 699999999988764 78999999999999998776655443221 234568999999754 8999999998
Q ss_pred C-CCCcEEEEecchhHHHHHHHhhhccCCCCccccccCCCCceEEEeeHHHHHhhh--ccccCCCceEEEEccccccCCC
Q 042857 828 A-PNLNVVEYHGCAKARAIIRQYEWHASDPDNLNKKTSSYKFNVLLTTYEMILADS--SHLRGVPWEVLVVDEGHRLKNS 904 (1404)
Q Consensus 828 ~-P~l~Vvvy~G~~~~R~~ir~~E~~~~~~~~~~~~~~~~kfdVvITTYe~l~~d~--~~L~~i~w~lVIVDEAHrlKN~ 904 (1404)
. +++.++.++|+.......... ....+|+|+|++.+.... ..+.--++++|||||||++...
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~iiv~Tp~~l~~~~~~~~~~~~~~~~lViDEah~~~~~ 182 (228)
T 3iuy_A 118 SYKGLKSICIYGGRNRNGQIEDI---------------SKGVDIIIATPGRLNDLQMNNSVNLRSITYLVIDEADKMLDM 182 (228)
T ss_dssp CCTTCCEEEECC------CHHHH---------------HSCCSEEEECHHHHHHHHHTTCCCCTTCCEEEECCHHHHHHT
T ss_pred cccCceEEEEECCCChHHHHHHh---------------cCCCCEEEECHHHHHHHHHcCCcCcccceEEEEECHHHHhcc
Confidence 5 578888888865543322221 124789999999987632 2223345789999999998643
Q ss_pred --ccHHHHHHhhccc-ccEEEEeccC
Q 042857 905 --GSKLFSLLNSFSF-QHRVLLTGTP 927 (1404)
Q Consensus 905 --~Sk~~~~L~~l~~-~~rLLLTGTP 927 (1404)
...+...+..+.. ...++||||.
T Consensus 183 ~~~~~~~~i~~~~~~~~~~l~~SAT~ 208 (228)
T 3iuy_A 183 EFEPQIRKILLDVRPDRQTVMTSATW 208 (228)
T ss_dssp TCHHHHHHHHHHSCSSCEEEEEESCC
T ss_pred chHHHHHHHHHhCCcCCeEEEEEeeC
Confidence 3345555666653 4457899996
No 89
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=99.36 E-value=3.2e-11 Score=152.70 Aligned_cols=124 Identities=19% Similarity=0.195 Sum_probs=107.0
Q ss_pred hHHHHHHHHHHHHHHcCCeEEEEecchhHHHHHHHHHhhhcCCceEEEEeCCCCHHHHHHHHHHHhcCCCceEEEeeccc
Q 042857 1071 AKLTLLHSMLKVLYKEGHRVLIFSQMTKLLDILEDYLNIEFGPKTYERVDGSVSVGDRQAAITRFNQDKSRFVFLLSTRS 1150 (1404)
Q Consensus 1071 gKl~~L~kLL~kl~~~G~KVLIFSq~~~~LDiLed~L~~~f~g~~y~rLdGs~s~~eRq~~Id~Fn~~~s~~VfLLSTrA 1150 (1404)
+++..|...|......|.+||||+......+.|..+|... |+.+..+||.+++.+|..+++.|..+... +|++|.+
T Consensus 429 ~~~~~Ll~~l~~~~~~~~~vlVf~~t~~~ae~L~~~L~~~--gi~~~~lh~~~~~~~R~~~l~~f~~g~~~--VLVaT~~ 504 (661)
T 2d7d_A 429 GQIDDLIGEIQARIERNERVLVTTLTKKMSEDLTDYLKEI--GIKVNYLHSEIKTLERIEIIRDLRLGKYD--VLVGINL 504 (661)
T ss_dssp THHHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHT--TCCEEEECTTCCHHHHHHHHHHHHHTSCS--EEEESCC
T ss_pred chHHHHHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHhc--CCCeEEEeCCCCHHHHHHHHHHHhcCCeE--EEEecch
Confidence 4556666667777778999999999999999999999976 78888999999999999999999875544 8999999
Q ss_pred ccccccccCCCEEEEEcC-----CCCHhHHHHHHHhhhccCCCCcEEEEEEeeCCC
Q 042857 1151 CGLGINLATADTVIIYDS-----DFNPHADIQAMNRAHRIGQSKRLLVYRLVVRAS 1201 (1404)
Q Consensus 1151 gG~GINL~~AdtVIi~Ds-----dWNP~~d~QAigRahRiGQ~k~V~VYrLvt~~T 1201 (1404)
++.|||++.++.||++|. ++++..++|++||++|.+ .-.++.|++..+
T Consensus 505 l~~GlDip~v~lVi~~d~d~~G~p~s~~~~iQr~GRagR~~---~G~~i~~~~~~~ 557 (661)
T 2d7d_A 505 LREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNA---EGRVIMYADKIT 557 (661)
T ss_dssp CSTTCCCTTEEEEEETTTTCCTTTTSHHHHHHHHHTTTTST---TCEEEEECSSCC
T ss_pred hhCCcccCCCCEEEEeCcccccCCCCHHHHHHHhCcccCCC---CCEEEEEEeCCC
Confidence 999999999999999998 899999999999999973 334566777664
No 90
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=99.35 E-value=3.6e-13 Score=120.57 Aligned_cols=52 Identities=50% Similarity=1.311 Sum_probs=48.1
Q ss_pred cccccccccccCCCceEEcCCCCCcccccccCCCCCCCCCCCccCccccccc
Q 042857 72 DGYYYECVICDLGGNLLCCDSCPRTYHLQCLDPPLKRIPNGKWQCPKCTQKN 123 (1404)
Q Consensus 72 d~~~~~C~~C~~~g~ll~Cd~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~~ 123 (1404)
+.++.+|.+|+++|+||+||.|+++||++|+.|||..+|.|+|+|+.|..+.
T Consensus 5 ~~~~~~C~vC~~~g~ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~~~ 56 (66)
T 1xwh_A 5 QKNEDECAVCRDGGELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQAT 56 (66)
T ss_dssp CSCCCSBSSSSCCSSCEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHHTC
T ss_pred CCCCCCCccCCCCCCEEEcCCCChhhcccccCCCcCcCCCCCeECccccCcc
Confidence 4567789999999999999999999999999999999999999999998653
No 91
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.33 E-value=4.5e-13 Score=116.05 Aligned_cols=52 Identities=54% Similarity=1.280 Sum_probs=48.1
Q ss_pred CCcccccccccccCCCceEEcCCCCCcccccccCCCCCCCCCCCccCccccc
Q 042857 70 GNDGYYYECVICDLGGNLLCCDSCPRTYHLQCLDPPLKRIPNGKWQCPKCTQ 121 (1404)
Q Consensus 70 ~~d~~~~~C~~C~~~g~ll~Cd~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~ 121 (1404)
+.+.++.+|.+|+.+|+||+||.|+++||++|+.|||..+|.|+|+|+.|..
T Consensus 4 g~~~~~~~C~vC~~~g~ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 4 GSSGHEDFCSVCRKSGQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 55 (56)
T ss_dssp CCCSSCCSCSSSCCSSCCEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred CcCCCCCCCccCCCCCeEEEcCCCCcceECccCCCCcCCCCCCceEChhhhC
Confidence 4566778899999999999999999999999999999999999999999964
No 92
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=99.32 E-value=1.5e-11 Score=135.95 Aligned_cols=155 Identities=21% Similarity=0.228 Sum_probs=106.2
Q ss_pred CCCHHHHHHHHHHHHhhccCCcEEEEcCCCchHHHHHHHHHHHHHhhc-cCCCcEEEEeCCC-ChHHHHHHHHHHCC--C
Q 042857 755 ALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEF-KAKLPCLVLVPLS-TMPNWLAEFALWAP--N 830 (1404)
Q Consensus 755 ~L~pyQlegVnwL~~~~~~~~~~ILADEMGLGKTiqaIa~L~~L~~~~-~~~gP~LIVvP~S-ll~nW~rEf~kw~P--~ 830 (1404)
.|+|||.+++..+.. +.++|+...+|.|||+.++..+...+... .....+|||+|.. +..||.+++..++. +
T Consensus 51 ~~~~~Q~~~i~~~~~----~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~ 126 (245)
T 3dkp_A 51 MPTPIQMQAIPVMLH----GRELLASAPTGSGKTLAFSIPILMQLKQPANKGFRALIISPTRELASQIHRELIKISEGTG 126 (245)
T ss_dssp SCCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHHHHCSCCSSSCCEEEECSSHHHHHHHHHHHHHHTTTSC
T ss_pred CCCHHHHHHHHHHhC----CCCEEEECCCCCcHHHHHHHHHHHHHhhcccCCceEEEEeCCHHHHHHHHHHHHHHhcccC
Confidence 599999999987765 78899999999999998766665544332 2333699999996 45899999999975 4
Q ss_pred CcEEEEecchhHHHHHHHhhhccCCCCccccccCCCCceEEEeeHHHHHhhhc----cccCCCceEEEEccccccCCC--
Q 042857 831 LNVVEYHGCAKARAIIRQYEWHASDPDNLNKKTSSYKFNVLLTTYEMILADSS----HLRGVPWEVLVVDEGHRLKNS-- 904 (1404)
Q Consensus 831 l~Vvvy~G~~~~R~~ir~~E~~~~~~~~~~~~~~~~kfdVvITTYe~l~~d~~----~L~~i~w~lVIVDEAHrlKN~-- 904 (1404)
+.+..++|...... .+. .......+|+|+|++.+..... .+.--++.+|||||||++...
T Consensus 127 ~~~~~~~~~~~~~~-----~~~---------~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~~~lViDEah~~~~~~~ 192 (245)
T 3dkp_A 127 FRIHMIHKAAVAAK-----KFG---------PKSSKKFDILVTTPNRLIYLLKQDPPGIDLASVEWLVVDESDKLFEDGK 192 (245)
T ss_dssp CCEECCCHHHHHHT-----TTS---------TTSCCCCCEEEECHHHHHHHHHSSSCSCCCTTCCEEEESSHHHHHHHC-
T ss_pred ceEEEEecCccHHH-----Hhh---------hhhcCCCCEEEECHHHHHHHHHhCCCCcccccCcEEEEeChHHhccccc
Confidence 56666665433211 000 1123467999999999876432 233346789999999998542
Q ss_pred ---ccHHHHHHhhcc--cccEEEEeccC
Q 042857 905 ---GSKLFSLLNSFS--FQHRVLLTGTP 927 (1404)
Q Consensus 905 ---~Sk~~~~L~~l~--~~~rLLLTGTP 927 (1404)
...+...+..+. ....++||||+
T Consensus 193 ~~~~~~~~~i~~~~~~~~~~~~~~SAT~ 220 (245)
T 3dkp_A 193 TGFRDQLASIFLACTSHKVRRAMFSATF 220 (245)
T ss_dssp -CHHHHHHHHHHHCCCTTCEEEEEESSC
T ss_pred ccHHHHHHHHHHhcCCCCcEEEEEeccC
Confidence 123333333332 34568999998
No 93
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=99.31 E-value=2.3e-11 Score=134.57 Aligned_cols=154 Identities=16% Similarity=0.105 Sum_probs=110.5
Q ss_pred CCCHHHHHHHHHHHHhhccCCcEEEEcCCCchHHHHHHHHHHHHHhhc-----cCCCcEEEEeCCCCh-HHHHHHHHHHC
Q 042857 755 ALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEF-----KAKLPCLVLVPLSTM-PNWLAEFALWA 828 (1404)
Q Consensus 755 ~L~pyQlegVnwL~~~~~~~~~~ILADEMGLGKTiqaIa~L~~L~~~~-----~~~gP~LIVvP~Sll-~nW~rEf~kw~ 828 (1404)
.++|||.+++..+.. +.++|+...+|.|||+.++..+...+... .....+|||+|...+ .||.+++..++
T Consensus 51 ~~~~~Q~~~i~~~~~----g~~~l~~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~ 126 (242)
T 3fe2_A 51 EPTAIQAQGWPVALS----GLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAEYC 126 (242)
T ss_dssp SCCHHHHHHHHHHHH----TCCEEEEECTTSCHHHHHHHHHHHHHHTSCCCCTTCCCSEEEECSSHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhC----CCCEEEECCCcCHHHHHHHHHHHHHHHhccccccCCCCEEEEEeCcHHHHHHHHHHHHHHH
Confidence 599999999988775 78999999999999999776665544321 234468999998654 89999988875
Q ss_pred --CCCcEEEEecchhHHHHHHHhhhccCCCCccccccCCCCceEEEeeHHHHHhhhc--cccCCCceEEEEccccccCCC
Q 042857 829 --PNLNVVEYHGCAKARAIIRQYEWHASDPDNLNKKTSSYKFNVLLTTYEMILADSS--HLRGVPWEVLVVDEGHRLKNS 904 (1404)
Q Consensus 829 --P~l~Vvvy~G~~~~R~~ir~~E~~~~~~~~~~~~~~~~kfdVvITTYe~l~~d~~--~L~~i~w~lVIVDEAHrlKN~ 904 (1404)
.++++..++|+........... ...+|+|+|++.+..... .+.--.+.+|||||||++-..
T Consensus 127 ~~~~~~~~~~~g~~~~~~~~~~~~---------------~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~lViDEah~l~~~ 191 (242)
T 3fe2_A 127 RACRLKSTCIYGGAPKGPQIRDLE---------------RGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDM 191 (242)
T ss_dssp HHTTCCEEEECTTSCHHHHHHHHH---------------HCCSEEEECHHHHHHHHHHTSCCCTTCCEEEETTHHHHHHT
T ss_pred hhcCceEEEEECCCChHHHHHHhc---------------CCCCEEEECHHHHHHHHHcCCCCcccccEEEEeCHHHHhhh
Confidence 3678888888765544433321 146899999998875432 223346789999999998643
Q ss_pred --ccHHHHHHhhccc-ccEEEEeccC
Q 042857 905 --GSKLFSLLNSFSF-QHRVLLTGTP 927 (1404)
Q Consensus 905 --~Sk~~~~L~~l~~-~~rLLLTGTP 927 (1404)
...+...+..+.. ...+++|||+
T Consensus 192 ~~~~~~~~i~~~~~~~~q~~~~SAT~ 217 (242)
T 3fe2_A 192 GFEPQIRKIVDQIRPDRQTLMWSATW 217 (242)
T ss_dssp TCHHHHHHHHTTSCSSCEEEEEESCC
T ss_pred CcHHHHHHHHHhCCccceEEEEEeec
Confidence 3344555556643 4568899996
No 94
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=99.30 E-value=6.4e-13 Score=116.68 Aligned_cols=51 Identities=51% Similarity=1.171 Sum_probs=47.7
Q ss_pred cccccccccccCCCceEEcCCCCCcccccccCCCCCCCCCCCccCcccccc
Q 042857 72 DGYYYECVICDLGGNLLCCDSCPRTYHLQCLDPPLKRIPNGKWQCPKCTQK 122 (1404)
Q Consensus 72 d~~~~~C~~C~~~g~ll~Cd~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~ 122 (1404)
|.++.+|.+|+.+|+||+||.|+++||++|+.||+..+|.|+|+|+.|...
T Consensus 2 d~~~~~C~vC~~~g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~ 52 (60)
T 2puy_A 2 MIHEDFCSVCRKSGQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQDQ 52 (60)
T ss_dssp CCCCSSCTTTCCCSSCEECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHHH
T ss_pred CCCCCCCcCCCCCCcEEEcCCCCcCEECCcCCCCcCCCCCCceEChhccCh
Confidence 456778999999999999999999999999999999999999999999764
No 95
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=99.30 E-value=8.8e-13 Score=117.76 Aligned_cols=49 Identities=24% Similarity=0.628 Sum_probs=45.4
Q ss_pred cccccccccCCCceEEcCCCCCcccccccCCCCCCCCCCCccCcccccc
Q 042857 74 YYYECVICDLGGNLLCCDSCPRTYHLQCLDPPLKRIPNGKWQCPKCTQK 122 (1404)
Q Consensus 74 ~~~~C~~C~~~g~ll~Cd~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~ 122 (1404)
....|.+|+++|+||+||.|+++||++|++|||..+|.|+|||+.|...
T Consensus 11 ~~~~C~vC~~~~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~ 59 (66)
T 2lri_C 11 PGARCGVCGDGTDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGD 59 (66)
T ss_dssp TTCCCTTTSCCTTCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTC
T ss_pred CCCCcCCCCCCCeEEECCCCCCceecccCCCccCcCCCCCEECccccCC
Confidence 3456999999999999999999999999999999999999999999754
No 96
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=99.30 E-value=9e-13 Score=116.10 Aligned_cols=52 Identities=42% Similarity=1.216 Sum_probs=47.8
Q ss_pred CcccccccccccCCCceEEcCCCCCcccccccCCCCCCCCCCCccCcccccc
Q 042857 71 NDGYYYECVICDLGGNLLCCDSCPRTYHLQCLDPPLKRIPNGKWQCPKCTQK 122 (1404)
Q Consensus 71 ~d~~~~~C~~C~~~g~ll~Cd~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~ 122 (1404)
.+.++.+|.+|+.+|+||+||.|+++||++|+.||+..+|.|+|+|+.|...
T Consensus 7 ~~~~~~~C~vC~~~g~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~~ 58 (61)
T 2l5u_A 7 ETDHQDYCEVCQQGGEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEKE 58 (61)
T ss_dssp SSCCCSSCTTTSCCSSEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGGG
T ss_pred cCCCCCCCccCCCCCcEEECCCCChhhhhhccCCCCCCCCCCceECcccccc
Confidence 4556678999999999999999999999999999999999999999999764
No 97
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=99.29 E-value=1.8e-11 Score=137.59 Aligned_cols=154 Identities=16% Similarity=0.180 Sum_probs=110.3
Q ss_pred CCCHHHHHHHHHHHHhhccCCcEEEEcCCCchHHHHHHHHHHHHHhhc----cCCCcEEEEeCCC-ChHHHHHHHHHHCC
Q 042857 755 ALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEF----KAKLPCLVLVPLS-TMPNWLAEFALWAP 829 (1404)
Q Consensus 755 ~L~pyQlegVnwL~~~~~~~~~~ILADEMGLGKTiqaIa~L~~L~~~~----~~~gP~LIVvP~S-ll~nW~rEf~kw~P 829 (1404)
.|+|+|.+++..++. ++++|+..++|.|||+.++..+...+... .....+|||+|.. +..||.+++.+++.
T Consensus 76 ~~~~~Q~~~i~~~~~----~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~ 151 (262)
T 3ly5_A 76 NMTEIQHKSIRPLLE----GRDLLAAAKTGSGKTLAFLIPAVELIVKLRFMPRNGTGVLILSPTRELAMQTFGVLKELMT 151 (262)
T ss_dssp BCCHHHHHHHHHHHH----TCCCEECCCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHhC----CCcEEEEccCCCCchHHHHHHHHHHHHhccccccCCceEEEEeCCHHHHHHHHHHHHHHHh
Confidence 589999999988776 68899999999999998776666544331 1244699999986 55899999999975
Q ss_pred --CCcEEEEecchhHHHHHHHhhhccCCCCccccccCCCCceEEEeeHHHHHhhhc---cccCCCceEEEEccccccCCC
Q 042857 830 --NLNVVEYHGCAKARAIIRQYEWHASDPDNLNKKTSSYKFNVLLTTYEMILADSS---HLRGVPWEVLVVDEGHRLKNS 904 (1404)
Q Consensus 830 --~l~Vvvy~G~~~~R~~ir~~E~~~~~~~~~~~~~~~~kfdVvITTYe~l~~d~~---~L~~i~w~lVIVDEAHrlKN~ 904 (1404)
...+..+.|+........... ...+|+|+|++.+..... .+.--++.+|||||||++-..
T Consensus 152 ~~~~~~~~~~g~~~~~~~~~~~~---------------~~~~Iiv~Tp~~l~~~~~~~~~~~~~~l~~lViDEah~l~~~ 216 (262)
T 3ly5_A 152 HHVHTYGLIMGGSNRSAEAQKLG---------------NGINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDV 216 (262)
T ss_dssp TCCSCEEEECSSSCHHHHHHHHH---------------HCCSEEEECHHHHHHHHHHCTTCCCTTCCEEEECSHHHHHHT
T ss_pred hcCceEEEEECCCCHHHHHHHhc---------------CCCCEEEEcHHHHHHHHHccCCcccccCCEEEEcChHHHhhh
Confidence 356777777665444333221 136899999998865432 123345789999999997543
Q ss_pred --ccHHHHHHhhccc-ccEEEEeccC
Q 042857 905 --GSKLFSLLNSFSF-QHRVLLTGTP 927 (1404)
Q Consensus 905 --~Sk~~~~L~~l~~-~~rLLLTGTP 927 (1404)
...+...+..+.. ...++||||+
T Consensus 217 ~~~~~l~~i~~~~~~~~q~l~~SAT~ 242 (262)
T 3ly5_A 217 GFEEELKQIIKLLPTRRQTMLFSATQ 242 (262)
T ss_dssp TCHHHHHHHHHHSCSSSEEEEECSSC
T ss_pred hHHHHHHHHHHhCCCCCeEEEEEecC
Confidence 3444555666654 4568899997
No 98
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=99.22 E-value=4.4e-12 Score=138.33 Aligned_cols=55 Identities=38% Similarity=1.021 Sum_probs=49.9
Q ss_pred CCcccccccccccCCCceEEcCCCCCcccccccCCCCCCCCCCCccCcccccccc
Q 042857 70 GNDGYYYECVICDLGGNLLCCDSCPRTYHLQCLDPPLKRIPNGKWQCPKCTQKND 124 (1404)
Q Consensus 70 ~~d~~~~~C~~C~~~g~ll~Cd~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~~~ 124 (1404)
+.+.++++|.+|+++|+||+||.|+++||++|+.||+..+|.|+|+||.|.....
T Consensus 2 ~~d~~~~~C~~C~~~g~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~~ 56 (207)
T 3u5n_A 2 DDDPNEDWCAVCQNGGDLLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIGK 56 (207)
T ss_dssp -CCSSCSSBTTTCCCEEEEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSSS
T ss_pred CCCCCCCCCCCCCCCCceEEcCCCCCccCCccCCCCCCCCCCCCEEeCceeCccc
Confidence 3566778899999999999999999999999999999999999999999997643
No 99
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=99.19 E-value=6.4e-12 Score=134.60 Aligned_cols=51 Identities=39% Similarity=1.071 Sum_probs=47.7
Q ss_pred ccccccccccCCCceEEcCCCCCcccccccCCCCCCCCCCCccCccccccc
Q 042857 73 GYYYECVICDLGGNLLCCDSCPRTYHLQCLDPPLKRIPNGKWQCPKCTQKN 123 (1404)
Q Consensus 73 ~~~~~C~~C~~~g~ll~Cd~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~~ 123 (1404)
.++++|.+|+++|+||+||.|+++||++|+.||+..+|.|+|+|+.|+...
T Consensus 2 ~~~~~C~~C~~~g~ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~ 52 (184)
T 3o36_A 2 PNEDWCAVCQNGGELLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDLS 52 (184)
T ss_dssp CSCSSCTTTCCCSSCEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCCccccCCCCCeeeecCCCCcccCccccCCCCCCCCCCCEECccccCcc
Confidence 456789999999999999999999999999999999999999999998764
No 100
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=99.17 E-value=6.8e-12 Score=106.49 Aligned_cols=46 Identities=43% Similarity=1.226 Sum_probs=41.9
Q ss_pred ccccccCCC---ceEEcCCCCCcccccccCCCCCCCCCCCccCcccccc
Q 042857 77 ECVICDLGG---NLLCCDSCPRTYHLQCLDPPLKRIPNGKWQCPKCTQK 122 (1404)
Q Consensus 77 ~C~~C~~~g---~ll~Cd~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~ 122 (1404)
+|.+|+.+| +||+||.|+++||++|+.|||..+|.|+|+|+.|...
T Consensus 2 ~C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~~ 50 (51)
T 1f62_A 2 RCKVCRKKGEDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQPA 50 (51)
T ss_dssp CCTTTCCSSCCSCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSCC
T ss_pred CCCCCCCCCCCCCEEECCCCChhhCcccCCCCcCCCCCCcEECcCcccc
Confidence 588998765 5999999999999999999999999999999999753
No 101
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=99.17 E-value=7.3e-10 Score=140.19 Aligned_cols=145 Identities=19% Similarity=0.192 Sum_probs=96.3
Q ss_pred CCCCCHHHHHHHHHHHHhhccCCcEEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEeCCCCh----HHHHHHHHHHC
Q 042857 753 GGALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLSTM----PNWLAEFALWA 828 (1404)
Q Consensus 753 g~~L~pyQlegVnwL~~~~~~~~~~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP~Sll----~nW~rEf~kw~ 828 (1404)
|..++|-|+.|+--|.. |. |....+|.|||+++...++..... ...++||+|+..| .+|...|-.++
T Consensus 77 G~~Pt~VQ~~~ip~Llq----G~--IaeakTGeGKTLvf~Lp~~L~aL~---G~qv~VvTPTreLA~Qdae~m~~l~~~l 147 (997)
T 2ipc_A 77 GMRHFDVQLIGGAVLHE----GK--IAEMKTGEGKTLVATLAVALNALT---GKGVHVVTVNDYLARRDAEWMGPVYRGL 147 (997)
T ss_dssp CCCCCHHHHHHHHHHHT----TS--EEECCSTHHHHHHHHHHHHHHHTT---CSCCEEEESSHHHHHHHHHHHHHHHHTT
T ss_pred CCCCcHHHHhhcccccC----Cc--eeeccCCCchHHHHHHHHHHHHHh---CCCEEEEeCCHHHHHHHHHHHHHHHHhc
Confidence 45788999999876644 43 888899999999776555322211 2358999999877 45777777766
Q ss_pred CCCcEEEEecchhHHHHHHHhhhccCCCCccccccCCCCceEEEeeHHHHH----hhh-----ccccCC---CceEEEEc
Q 042857 829 PNLNVVEYHGCAKARAIIRQYEWHASDPDNLNKKTSSYKFNVLLTTYEMIL----ADS-----SHLRGV---PWEVLVVD 896 (1404)
Q Consensus 829 P~l~Vvvy~G~~~~R~~ir~~E~~~~~~~~~~~~~~~~kfdVvITTYe~l~----~d~-----~~L~~i---~w~lVIVD 896 (1404)
++++.+..|+......... ...||++.|+..+. .+. ..+..- ...++|||
T Consensus 148 -GLsv~~i~Gg~~~~~r~~a-----------------y~~DIvyGTpgrlgfDyLrd~m~~~~~~l~~r~d~~l~~lIID 209 (997)
T 2ipc_A 148 -GLSVGVIQHASTPAERRKA-----------------YLADVTYVTNSELGFDYLRDNMAISPDQLVLRHDHPLHYAIID 209 (997)
T ss_dssp -TCCEEECCTTCCHHHHHHH-----------------HTSSEEEEEHHHHHHHHHHHTSCSSTTTCCSCSSSSSCEEEET
T ss_pred -CCeEEEEeCCCCHHHHHHH-----------------cCCCEEEECchhhhhHHHHHhhhcchhhcccccCCCcceEEEe
Confidence 7888888886543221111 24689999998883 221 112223 57899999
Q ss_pred cccccCCCccHHHHHHhhcccccEEEEeccCCCCChHHHHH
Q 042857 897 EGHRLKNSGSKLFSLLNSFSFQHRVLLTGTPLQNNIGEMYN 937 (1404)
Q Consensus 897 EAHrlKN~~Sk~~~~L~~l~~~~rLLLTGTPlqNnl~EL~s 937 (1404)
|+|++--.. ....+++|| |.... ..+|.
T Consensus 210 EaDsmLiDe-----------artPLIISg-p~~~~-~~lY~ 237 (997)
T 2ipc_A 210 EVDSILIDE-----------ARTPLIISG-PAEKA-TDLYY 237 (997)
T ss_dssp THHHHTTSS-----------TTSCEEEEE-SCSSC-HHHHH
T ss_pred chHHHHHhC-----------CCCCeeeeC-CCccc-hHHHH
Confidence 999764221 223489999 88776 34443
No 102
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.17 E-value=1e-11 Score=118.23 Aligned_cols=51 Identities=47% Similarity=1.074 Sum_probs=45.9
Q ss_pred cccccccccccCCCc---eEEcCCCCCcccccccCCCCCCCCCCCccCcccccc
Q 042857 72 DGYYYECVICDLGGN---LLCCDSCPRTYHLQCLDPPLKRIPNGKWQCPKCTQK 122 (1404)
Q Consensus 72 d~~~~~C~~C~~~g~---ll~Cd~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~ 122 (1404)
..++..|.+|+.+++ ||+||.|+++||++|+.|||..+|.|+|+|+.|...
T Consensus 13 ~~~~~~C~vC~~~~~~~~ll~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~ 66 (92)
T 2e6r_A 13 FIDSYICQVCSRGDEDDKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCILA 66 (92)
T ss_dssp CCCCCCCSSSCCSGGGGGCEECTTTCCEECSSSSSSCCSSCCSSCCCCHHHHHH
T ss_pred ccCCCCCccCCCcCCCCCEEEcCCCCchhccccCCCCcccCCCCCcCCccCcCc
Confidence 445567999998875 999999999999999999999999999999999864
No 103
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=99.15 E-value=8.9e-12 Score=111.45 Aligned_cols=53 Identities=30% Similarity=0.795 Sum_probs=46.5
Q ss_pred CcccccccccccCC-----CceEEcCCCCCcccccccCCCCCC--C-CCCCccCccccccc
Q 042857 71 NDGYYYECVICDLG-----GNLLCCDSCPRTYHLQCLDPPLKR--I-PNGKWQCPKCTQKN 123 (1404)
Q Consensus 71 ~d~~~~~C~~C~~~-----g~ll~Cd~C~~~~H~~Cl~Ppl~~--~-P~g~W~C~~C~~~~ 123 (1404)
++.++.+|.+|+.+ +.||+||.|+++||++|+.||+.. + |.|+|+|+.|....
T Consensus 2 ~~~~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~~ 62 (66)
T 2yt5_A 2 SSGSSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFAT 62 (66)
T ss_dssp CCCCCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHTT
T ss_pred CCCCCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCcc
Confidence 35567789999987 779999999999999999999987 4 89999999998653
No 104
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=99.14 E-value=1.3e-09 Score=134.92 Aligned_cols=78 Identities=23% Similarity=0.183 Sum_probs=57.0
Q ss_pred CCCCCHHHHHHHHHHHHhhccCCcEEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEeCCCC-hHHHHHHHHHHCCCC
Q 042857 753 GGALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLST-MPNWLAEFALWAPNL 831 (1404)
Q Consensus 753 g~~L~pyQlegVnwL~~~~~~~~~~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP~Sl-l~nW~rEf~kw~P~l 831 (1404)
|..++|+|.+.+.-+...+..++++|+...+|.|||+.++..+... .+++||++|+.. ..||.+++..+ .+
T Consensus 5 ~~~~r~~Q~~~~~~v~~~~~~~~~~~~~a~TGtGKT~~~l~~~~~~------~~~~~~~~~t~~l~~q~~~~~~~l--~~ 76 (540)
T 2vl7_A 5 KLQLRQWQAEKLGEAINALKHGKTLLLNAKPGLGKTVFVEVLGMQL------KKKVLIFTRTHSQLDSIYKNAKLL--GL 76 (540)
T ss_dssp ----CCHHHHHHHHHHHHHHTTCEEEEECCTTSCHHHHHHHHHHHH------TCEEEEEESCHHHHHHHHHHHGGG--TC
T ss_pred CCCCCHHHHHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHhC------CCcEEEEcCCHHHHHHHHHHHHhc--CC
Confidence 4579999999998877777888999999999999998765554321 358999999865 48999998875 45
Q ss_pred cEEEEec
Q 042857 832 NVVEYHG 838 (1404)
Q Consensus 832 ~Vvvy~G 838 (1404)
++++..|
T Consensus 77 ~~~~l~g 83 (540)
T 2vl7_A 77 KTGFLIG 83 (540)
T ss_dssp CEEEC--
T ss_pred cEEEecC
Confidence 5555554
No 105
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=99.11 E-value=4.3e-10 Score=129.13 Aligned_cols=153 Identities=17% Similarity=0.132 Sum_probs=104.5
Q ss_pred CCCHHHHHHHHHHHHhhccCCcEEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEeCCCCh-HHHHHHHHHHC---CC
Q 042857 755 ALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLSTM-PNWLAEFALWA---PN 830 (1404)
Q Consensus 755 ~L~pyQlegVnwL~~~~~~~~~~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP~Sll-~nW~rEf~kw~---P~ 830 (1404)
.++|+|.+++..++. ..+.++|+...+|.|||+.++..+...+........+|||+|...+ .|+.+.+..+. +.
T Consensus 114 ~pt~iQ~~ai~~il~--~~~~~~l~~a~TGsGKT~a~~lp~l~~l~~~~~~~~~lil~PtreLa~Q~~~~~~~l~~~~~~ 191 (300)
T 3fmo_B 114 RPSKIQENALPLMLA--EPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYPE 191 (300)
T ss_dssp SCCHHHHHHHHHHTS--SSCCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTT
T ss_pred CCCHHHHHHHHHHHc--CCCCeEEEECCCCCCccHHHHHHHHHhhhccCCCceEEEEcCcHHHHHHHHHHHHHHHhhCCC
Confidence 589999999977654 1248999999999999998765555444333333369999999755 78888888775 56
Q ss_pred CcEEEEecchhHHHHHHHhhhccCCCCccccccCCCCceEEEeeHHHHHhhhc---cccCCCceEEEEccccccCCC---
Q 042857 831 LNVVEYHGCAKARAIIRQYEWHASDPDNLNKKTSSYKFNVLLTTYEMILADSS---HLRGVPWEVLVVDEGHRLKNS--- 904 (1404)
Q Consensus 831 l~Vvvy~G~~~~R~~ir~~E~~~~~~~~~~~~~~~~kfdVvITTYe~l~~d~~---~L~~i~w~lVIVDEAHrlKN~--- 904 (1404)
+.+..+.|..... .......+|+|+|++.+..... .+.--.+.+|||||||++-..
T Consensus 192 ~~~~~~~~~~~~~------------------~~~~~~~~IlV~TP~~l~~~l~~~~~~~l~~l~~lVlDEad~l~~~~~~ 253 (300)
T 3fmo_B 192 LKLAYAVRGNKLE------------------RGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGH 253 (300)
T ss_dssp CCEEEESTTCCCC------------------TTCCCCCSEEEECHHHHHHHHTTTCCCCGGGCSEEEETTHHHHHHSTTH
T ss_pred cEEEEEeCCccHh------------------hhhcCCCCEEEECHHHHHHHHHhcCCCChhhceEEEEeCHHHHhhccCc
Confidence 7888777753210 1112456899999999876542 222235689999999998641
Q ss_pred ccHHHHHHhhccc-ccEEEEeccC
Q 042857 905 GSKLFSLLNSFSF-QHRVLLTGTP 927 (1404)
Q Consensus 905 ~Sk~~~~L~~l~~-~~rLLLTGTP 927 (1404)
.......+..+.. ...+++|||+
T Consensus 254 ~~~~~~i~~~~~~~~q~i~~SAT~ 277 (300)
T 3fmo_B 254 QDQSIRIQRMLPRNCQMLLFSATF 277 (300)
T ss_dssp HHHHHHHHTTSCTTCEEEEEESCC
T ss_pred HHHHHHHHHhCCCCCEEEEEeccC
Confidence 1223334444443 3468899998
No 106
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=99.10 E-value=1.9e-11 Score=115.45 Aligned_cols=50 Identities=30% Similarity=0.785 Sum_probs=44.5
Q ss_pred cccccccccCC-----CceEEcCCCCCcccccccCCCCCC----CCCCCccCccccccc
Q 042857 74 YYYECVICDLG-----GNLLCCDSCPRTYHLQCLDPPLKR----IPNGKWQCPKCTQKN 123 (1404)
Q Consensus 74 ~~~~C~~C~~~-----g~ll~Cd~C~~~~H~~Cl~Ppl~~----~P~g~W~C~~C~~~~ 123 (1404)
.+.+|.+|+.+ +.||+||.|+++||++|+.|||.. +|.|+|+|+.|....
T Consensus 15 ~~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~ 73 (88)
T 1wev_A 15 MGLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQM 73 (88)
T ss_dssp HCCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHH
T ss_pred CCCcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccchh
Confidence 35579999987 579999999999999999999985 999999999998653
No 107
>2ee1_A Chromodomain helicase-DNA-binding protein 4; EC 3.6.1.-, ATP- dependent helicase CHD4, CHD-4, MI-2 autoantigen 218 kDa protein, MI2-beta; NMR {Homo sapiens}
Probab=99.09 E-value=2.2e-11 Score=107.66 Aligned_cols=58 Identities=24% Similarity=0.609 Sum_probs=49.6
Q ss_pred chhhhccchhhhhhhccCCCCcceeeeccCCCCCCcccccCCCchHHHhhHHHHHHHHH
Q 042857 656 ICDERWKQPQRVISLRSSKDGTREAFVKWTGLPYDECTWEKLDEPALEKYSHLTDLFVQ 714 (1404)
Q Consensus 656 ~~~~e~~~~eRii~~r~~~~~~~eylVKW~gL~Y~~~TWE~~~~~~~~~~~~li~~~~~ 714 (1404)
.++|+|+.|+|||++|...++..+|||||+||||++||||..+ .....++..|+.|++
T Consensus 6 ~~~pe~~~VeRIi~~r~~~~g~~eYLVKWkgl~y~e~TWE~~~-~~~~~~~~~I~~y~~ 63 (64)
T 2ee1_A 6 SGKPEWMMIHRILNHSVDKKGHVHYLIKWRDLPYDQASWESED-VEIQDYDLFKQSYWN 63 (64)
T ss_dssp SSCCSSCCCCCCCEEEECTTCCEEEEECCTTSCTTTCEEEETT-CCCTTHHHHHHHHHH
T ss_pred ccCCCcEEEEEEEEEEecCCCCEEEEEEEcCCCcccCcccCCc-ccCcchHHHHHHHHh
Confidence 4578999999999999877889999999999999999999765 234567788888864
No 108
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=99.07 E-value=4.7e-11 Score=107.96 Aligned_cols=46 Identities=39% Similarity=1.123 Sum_probs=41.2
Q ss_pred ccccccC---CCceEEcCCCCCcccccccCCCCCCCCCC-CccCcccccc
Q 042857 77 ECVICDL---GGNLLCCDSCPRTYHLQCLDPPLKRIPNG-KWQCPKCTQK 122 (1404)
Q Consensus 77 ~C~~C~~---~g~ll~Cd~C~~~~H~~Cl~Ppl~~~P~g-~W~C~~C~~~ 122 (1404)
.|.+|++ +|.||+||.|+++||++||+|||..+|.| +|+|+.|..+
T Consensus 20 ~C~~C~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~~ 69 (70)
T 3asl_A 20 ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRND 69 (70)
T ss_dssp SBTTTCCCSCGGGEEECTTTCCEEEGGGSSSCCSSCCSSSCCCCTTTSCC
T ss_pred CCcCCCCcCCCCCEEEcCCCCCceecccCCCCcCCCCCCCCcCCcCccCc
Confidence 4667784 56799999999999999999999999999 9999999854
No 109
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=99.06 E-value=4.7e-11 Score=112.68 Aligned_cols=49 Identities=37% Similarity=0.836 Sum_probs=43.4
Q ss_pred ccccccccccCCC-----ceEEcCCCCCcccccccCCCCCCCCCCCccCccccccc
Q 042857 73 GYYYECVICDLGG-----NLLCCDSCPRTYHLQCLDPPLKRIPNGKWQCPKCTQKN 123 (1404)
Q Consensus 73 ~~~~~C~~C~~~g-----~ll~Cd~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~~ 123 (1404)
.++.+|.+|+.++ +||+||.|+++||++|++||+ +|.|+|||+.|....
T Consensus 23 ~~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~--vP~g~W~C~~C~~~~ 76 (88)
T 2l43_A 23 DEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPY--IPEGQWLCRHCLQSR 76 (88)
T ss_dssp CCCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSS--CCSSCCCCHHHHHHT
T ss_pred CCCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCc--cCCCceECccccCcc
Confidence 3456799999987 799999999999999999985 899999999998653
No 110
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=99.06 E-value=4.4e-11 Score=128.57 Aligned_cols=48 Identities=31% Similarity=0.884 Sum_probs=45.5
Q ss_pred ccccccccCCCceEEcCCCCCcccccccCCCCCCCCCCCccCcccccc
Q 042857 75 YYECVICDLGGNLLCCDSCPRTYHLQCLDPPLKRIPNGKWQCPKCTQK 122 (1404)
Q Consensus 75 ~~~C~~C~~~g~ll~Cd~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~ 122 (1404)
+.+|.+|+.+|+||+||.|+++||++|+.||+..+|.|+|+|+.|...
T Consensus 2 ~~~C~~C~~~g~ll~Cd~C~~~~H~~Cl~p~l~~~p~g~W~C~~C~~~ 49 (189)
T 2ro1_A 2 ATICRVCQKPGDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 49 (189)
T ss_dssp CCCBTTTCCCSSCCCCTTTCCBCCSTTSTTCCSSCCCTTCCTTTTSCS
T ss_pred CCcCccCCCCCceeECCCCCchhccccCCCCcccCCCCCCCCcCccCC
Confidence 357999999999999999999999999999999999999999999876
No 111
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.05 E-value=7.6e-11 Score=108.44 Aligned_cols=45 Identities=40% Similarity=1.111 Sum_probs=41.5
Q ss_pred ccccccC---CCceEEcCCCCCcccccccCCCCCCCCCC-CccCccccc
Q 042857 77 ECVICDL---GGNLLCCDSCPRTYHLQCLDPPLKRIPNG-KWQCPKCTQ 121 (1404)
Q Consensus 77 ~C~~C~~---~g~ll~Cd~C~~~~H~~Cl~Ppl~~~P~g-~W~C~~C~~ 121 (1404)
.|.+|+. +++||+||.|+++||++|++|||..+|.| +|+|+.|..
T Consensus 28 ~C~vC~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 28 SCRVCGGKHEPNMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCKT 76 (77)
T ss_dssp SCSSSCCCCCSTTEEECSSSCCEEETTSSSSCCSSCCCSSCCCCTTTCC
T ss_pred CCcCcCCcCCCCCEEEcCCCCccccccccCCCccCCCCCCCcCCcCccC
Confidence 6888985 67899999999999999999999999999 999999964
No 112
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=99.02 E-value=4.9e-11 Score=108.02 Aligned_cols=49 Identities=37% Similarity=0.809 Sum_probs=43.1
Q ss_pred cccccccccccCCC-----ceEEcCCCCCcccccccCCCCCCCCCCCccCcccccc
Q 042857 72 DGYYYECVICDLGG-----NLLCCDSCPRTYHLQCLDPPLKRIPNGKWQCPKCTQK 122 (1404)
Q Consensus 72 d~~~~~C~~C~~~g-----~ll~Cd~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~ 122 (1404)
..++.+|.+|+.++ +||+||.|+++||++|++||. +|.|+|||+.|..+
T Consensus 13 ~~~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~~--vP~g~W~C~~C~~~ 66 (71)
T 2ku3_A 13 IDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPY--IPEGQWLCRHCLQS 66 (71)
T ss_dssp CCSSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCSS--CCSSCCCCHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCEEECCCCCCccccccCCCCc--CCCCCcCCccCcCc
Confidence 44566899999876 799999999999999999884 89999999999865
No 113
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=98.96 E-value=2.8e-10 Score=104.55 Aligned_cols=45 Identities=40% Similarity=1.144 Sum_probs=39.5
Q ss_pred ccccccCC---CceEEcCCCCCcccccccCCCCCCCCCCC-ccCccccc
Q 042857 77 ECVICDLG---GNLLCCDSCPRTYHLQCLDPPLKRIPNGK-WQCPKCTQ 121 (1404)
Q Consensus 77 ~C~~C~~~---g~ll~Cd~C~~~~H~~Cl~Ppl~~~P~g~-W~C~~C~~ 121 (1404)
.|.+|+.. +.||+||.|+++||++|+.|||..+|.|+ |+|+.|++
T Consensus 28 ~C~vC~~~~d~~~ll~CD~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~~ 76 (77)
T 3shb_A 28 ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 76 (77)
T ss_dssp SBTTTCCCSCGGGEEECTTTCCEEETTTSSSCCSSCCSSSCCCCTTTC-
T ss_pred cCCccCCCCCCcceeEeCCCCCccCcccCCCcccCCCCCCceECcCccc
Confidence 46667665 45999999999999999999999999999 99999975
No 114
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=98.94 E-value=3.8e-10 Score=109.89 Aligned_cols=52 Identities=40% Similarity=0.922 Sum_probs=45.8
Q ss_pred CCCcccccccccccCCCceEEcC--CCCCcccccccCCCCCCCCCCCccCcccccc
Q 042857 69 KGNDGYYYECVICDLGGNLLCCD--SCPRTYHLQCLDPPLKRIPNGKWQCPKCTQK 122 (1404)
Q Consensus 69 ~~~d~~~~~C~~C~~~g~ll~Cd--~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~ 122 (1404)
+..+.++.+|.+|+++|+||+|| .|+++||++|++ |..+|.|+|+||.|.-.
T Consensus 9 ~~~~~~~~~C~~C~~~G~ll~CD~~~Cp~~fH~~Cl~--L~~~P~g~W~Cp~c~C~ 62 (107)
T 4gne_A 9 EPKQMHEDYCFQCGDGGELVMCDKKDCPKAYHLLCLN--LTQPPYGKWECPWHQCD 62 (107)
T ss_dssp -CCCSSCSSCTTTCCCSEEEECCSTTCCCEECTGGGT--CSSCCSSCCCCGGGBCT
T ss_pred CCcCCCCCCCCcCCCCCcEeEECCCCCCcccccccCc--CCcCCCCCEECCCCCCC
Confidence 34456677899999999999999 899999999999 99999999999998744
No 115
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=98.92 E-value=3.5e-10 Score=123.15 Aligned_cols=46 Identities=39% Similarity=1.123 Sum_probs=38.0
Q ss_pred ccccccC---CCceEEcCCCCCcccccccCCCCCCCCCC-CccCcccccc
Q 042857 77 ECVICDL---GGNLLCCDSCPRTYHLQCLDPPLKRIPNG-KWQCPKCTQK 122 (1404)
Q Consensus 77 ~C~~C~~---~g~ll~Cd~C~~~~H~~Cl~Ppl~~~P~g-~W~C~~C~~~ 122 (1404)
.|.+|+. ++.||+||.|+++||++|+.|||..+|.| +|+||.|...
T Consensus 176 ~C~vC~~~~~~~~lL~CD~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~~ 225 (226)
T 3ask_A 176 ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRND 225 (226)
T ss_dssp SCSSSCCCCC--CCEECSSSCCEECSCC--CCCCSCCSSSCCCCGGGC--
T ss_pred CCcCCCCCCCCCCeEEcCCCCcceeCccCCCCcccCCCCCCCCCcCCcCc
Confidence 6888987 56799999999999999999999999999 9999999753
No 116
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=98.91 E-value=5.7e-10 Score=110.11 Aligned_cols=49 Identities=45% Similarity=1.117 Sum_probs=43.1
Q ss_pred cccccccccCCC----ceEEcCCCCCcccccccCCCCCCCCCCCccCcccccc
Q 042857 74 YYYECVICDLGG----NLLCCDSCPRTYHLQCLDPPLKRIPNGKWQCPKCTQK 122 (1404)
Q Consensus 74 ~~~~C~~C~~~g----~ll~Cd~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~ 122 (1404)
.+.+|.+|+.+| +||+||.|+++||++|+.|||..+|.|+|+|+.|+.+
T Consensus 60 ~C~~C~vC~~~~~~~~~ll~Cd~C~~~yH~~Cl~p~l~~~P~~~W~C~~C~~k 112 (112)
T 3v43_A 60 ECKTCSSCRDQGKNADNMLFCDSCDRGFHMECCDPPLTRMPKGMWICQICRPR 112 (112)
T ss_dssp TTCCBTTTCCCCCTTCCCEECTTTCCEECGGGCSSCCSSCCSSCCCCTTTSCC
T ss_pred cCCccccccCcCCCccceEEcCCCCCeeecccCCCCCCCCCCCCeECCCCCCc
Confidence 344688888754 6999999999999999999999999999999999753
No 117
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=98.85 E-value=7.9e-10 Score=109.45 Aligned_cols=48 Identities=40% Similarity=1.089 Sum_probs=42.4
Q ss_pred ccccccccC---CCceEEcCCCCCcccccccCCCCCCCCCCCccCcccccc
Q 042857 75 YYECVICDL---GGNLLCCDSCPRTYHLQCLDPPLKRIPNGKWQCPKCTQK 122 (1404)
Q Consensus 75 ~~~C~~C~~---~g~ll~Cd~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~ 122 (1404)
+..|.+|+. ++.||+||.|+++||++|+.|||..+|.|+|+|+.|...
T Consensus 58 C~~C~~C~~~~~~~~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~~ 108 (114)
T 2kwj_A 58 CKSCILCGTSENDDQLLFCDDCDRGYHMYCLNPPVAEPPEGSWSCHLCWEL 108 (114)
T ss_dssp GCCCTTTTCCTTTTTEEECSSSCCEEETTTSSSCCSSCCSSCCCCHHHHHH
T ss_pred cCccCcccccCCCCceEEcCCCCccccccccCCCccCCCCCCeECccccch
Confidence 345777877 467999999999999999999999999999999999754
No 118
>2epb_A Chromodomain-helicase-DNA-binding protein 6; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.84 E-value=5e-10 Score=100.64 Aligned_cols=57 Identities=23% Similarity=0.527 Sum_probs=45.2
Q ss_pred cchhhhccchhhhhhhccC--C-CC--cceeeeccCCCCCCcccccCCCchHHHhhHHHHHHHHHH
Q 042857 655 NICDERWKQPQRVISLRSS--K-DG--TREAFVKWTGLPYDECTWEKLDEPALEKYSHLTDLFVQF 715 (1404)
Q Consensus 655 ~~~~~e~~~~eRii~~r~~--~-~~--~~eylVKW~gL~Y~~~TWE~~~~~~~~~~~~li~~~~~~ 715 (1404)
+.++++|..|+|||++|.. . .| ..+|||||+||||++||||..+. + .+.+|+.|.+.
T Consensus 5 ~~~~pe~~~VErIl~~r~~~~~~~g~~~~eYLVKWkgl~y~e~TWE~~~~--l--~~~~I~~f~~r 66 (68)
T 2epb_A 5 SSGNPDYVEVDRILEVAHTKDAETGEEVTHYLVKWCSLPYEESTWELEED--V--DPAKVKEFESL 66 (68)
T ss_dssp CSSCSSCCCCCEEEEEEEEECSSSCCEEEEEEEECTTSCGGGCCEEETTT--S--CHHHHHHHHHH
T ss_pred CcCCCCceEEeEEEEEEecccccCCCcceEEEEEEcCCChhcCccccchh--c--CHHHHHHHHHh
Confidence 4678999999999998843 2 24 67999999999999999997654 2 35788888753
No 119
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=98.83 E-value=5.2e-10 Score=113.90 Aligned_cols=55 Identities=35% Similarity=0.841 Sum_probs=49.2
Q ss_pred CCCCcccccccccccCCCceEEcCCCCCcccccccCCCCCC-------CCCCCccCcccccc
Q 042857 68 KKGNDGYYYECVICDLGGNLLCCDSCPRTYHLQCLDPPLKR-------IPNGKWQCPKCTQK 122 (1404)
Q Consensus 68 ~~~~d~~~~~C~~C~~~g~ll~Cd~C~~~~H~~Cl~Ppl~~-------~P~g~W~C~~C~~~ 122 (1404)
...+|+++.+|.+|.+||+|++||.|+++||..|+.||+.. .|.|+|+|+.|..+
T Consensus 56 ~~d~Dg~~d~C~vC~~GG~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~~ 117 (142)
T 2lbm_A 56 SRDSDGMDEQCRWCAEGGNLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHPE 117 (142)
T ss_dssp CBCTTSCBCSCSSSCCCSSEEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCCC
T ss_pred eecCCCCCCeecccCCCCcEEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccCc
Confidence 34568899999999999999999999999999999999862 58999999999864
No 120
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=98.79 E-value=1.5e-09 Score=99.45 Aligned_cols=51 Identities=27% Similarity=0.693 Sum_probs=44.5
Q ss_pred cccccccccccCC---CceEEcCCCCCcccccccCCCCCCCCCCCccCcccccc
Q 042857 72 DGYYYECVICDLG---GNLLCCDSCPRTYHLQCLDPPLKRIPNGKWQCPKCTQK 122 (1404)
Q Consensus 72 d~~~~~C~~C~~~---g~ll~Cd~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~ 122 (1404)
+....+|.+|+.+ +.||+||.|++|||+.|+++++...|.++|+|+.|..+
T Consensus 15 ~~~~~~C~~C~~~~~~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~ 68 (75)
T 2k16_A 15 GNQIWICPGCNKPDDGSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANK 68 (75)
T ss_dssp SCEEECBTTTTBCCSSCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHH
T ss_pred CCCCcCCCCCCCCCCCCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCc
Confidence 4455679999886 35999999999999999999998888899999999865
No 121
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=98.76 E-value=3.1e-09 Score=104.66 Aligned_cols=49 Identities=35% Similarity=0.935 Sum_probs=43.8
Q ss_pred ccccccccCCCc---eEEcCCCCCcccccccCCCCCCCCCCCccCccccccc
Q 042857 75 YYECVICDLGGN---LLCCDSCPRTYHLQCLDPPLKRIPNGKWQCPKCTQKN 123 (1404)
Q Consensus 75 ~~~C~~C~~~g~---ll~Cd~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~~ 123 (1404)
+.+|.+|+.+++ ||+||.|+++||++|+.|||..+|.|+|+|+.|....
T Consensus 54 C~~C~~C~~~~~~~~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~c~ 105 (111)
T 2ysm_A 54 CKVCQNCKQSGEDSKMLVCDTCDKGYHTFCLQPVMKSVPTNGWKCKNCRICI 105 (111)
T ss_dssp TCCCTTTCCCSCCTTEEECSSSCCEEEGGGSSSCCSSCCSSCCCCHHHHCCS
T ss_pred CCcccccCccCCCCCeeECCCCCcHHhHHhcCCccccCCCCCcCCcCCcCcC
Confidence 446888888775 9999999999999999999999999999999997653
No 122
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=98.73 E-value=1.4e-08 Score=96.02 Aligned_cols=47 Identities=36% Similarity=1.022 Sum_probs=40.4
Q ss_pred cccccccccC--CCceEEcCC--CC-CcccccccCCCCCCCCCCCccCccccccc
Q 042857 74 YYYECVICDL--GGNLLCCDS--CP-RTYHLQCLDPPLKRIPNGKWQCPKCTQKN 123 (1404)
Q Consensus 74 ~~~~C~~C~~--~g~ll~Cd~--C~-~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~~ 123 (1404)
...+| +|++ .|.||+||. |+ .|||+.|+. |...|.|.||||.|..+.
T Consensus 35 e~~yC-iC~~~~~g~MI~CD~~dC~~~WfH~~CVg--l~~~p~g~W~Cp~C~~~~ 86 (91)
T 1weu_A 35 EPTYC-LCHQVSYGEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQES 86 (91)
T ss_dssp CCBCS-TTCCBCCSCCCCCSCSSCSCCCCCSTTTT--CSSCCCSSCCCTTTCCCC
T ss_pred CCcEE-ECCCCCCCCEeEecCCCCCCCCEecccCC--cCcCCCCCEECcCccCcC
Confidence 44567 8888 578999999 77 799999999 888999999999998653
No 123
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=98.69 E-value=1.5e-08 Score=91.81 Aligned_cols=48 Identities=35% Similarity=1.003 Sum_probs=41.0
Q ss_pred ccccccccccC--CCceEEcCC--CC-CcccccccCCCCCCCCCCCccCccccccc
Q 042857 73 GYYYECVICDL--GGNLLCCDS--CP-RTYHLQCLDPPLKRIPNGKWQCPKCTQKN 123 (1404)
Q Consensus 73 ~~~~~C~~C~~--~g~ll~Cd~--C~-~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~~ 123 (1404)
....+| +|++ .|.||+||. |+ .|||+.|+. |+..|.|.||||.|....
T Consensus 14 ~~~~~C-~C~~~~~g~MI~CD~~~C~~~wfH~~Cvg--l~~~p~g~w~Cp~C~~~~ 66 (71)
T 1wen_A 14 NEPTYC-LCHQVSYGEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQES 66 (71)
T ss_dssp TSCCCS-TTCCCSCSSEECCSCSSCSCCCEETTTTT--CSSCCSSCCCCTTTSSCS
T ss_pred CCCCEE-ECCCCCCCCEeEeeCCCCCCccEecccCC--cCcCCCCCEECCCCCccc
Confidence 344578 6988 578999999 88 699999999 889999999999998653
No 124
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=98.64 E-value=8.1e-09 Score=90.21 Aligned_cols=46 Identities=41% Similarity=1.115 Sum_probs=39.9
Q ss_pred cccccccccC--CCceEEcCC--CC-CcccccccCCCCCCCCCCCccCcccccc
Q 042857 74 YYYECVICDL--GGNLLCCDS--CP-RTYHLQCLDPPLKRIPNGKWQCPKCTQK 122 (1404)
Q Consensus 74 ~~~~C~~C~~--~g~ll~Cd~--C~-~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~ 122 (1404)
...+| +|++ .|.||.||. |+ .|||+.|++ |+..|.|.|+||.|..+
T Consensus 8 e~~yC-~C~~~~~g~mi~CD~~~C~~~wfH~~Cvg--l~~~p~~~w~Cp~C~~~ 58 (59)
T 3c6w_A 8 EPTYC-LCHQVSYGEMIGCDNPDCPIEWFHFACVD--LTTKPKGKWFCPRCVQE 58 (59)
T ss_dssp CCEET-TTTEECCSEEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHCC
T ss_pred CCcEE-ECCCCCCCCeeEeeCCCCCCCCEecccCC--cccCCCCCEECcCccCc
Confidence 44567 7988 688999999 88 699999999 88999999999999754
No 125
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=98.61 E-value=1e-08 Score=89.90 Aligned_cols=46 Identities=37% Similarity=1.037 Sum_probs=39.1
Q ss_pred cccccccccC--CCceEEcCC--CC-CcccccccCCCCCCCCCCCccCcccccc
Q 042857 74 YYYECVICDL--GGNLLCCDS--CP-RTYHLQCLDPPLKRIPNGKWQCPKCTQK 122 (1404)
Q Consensus 74 ~~~~C~~C~~--~g~ll~Cd~--C~-~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~ 122 (1404)
...+| +|++ .|.||+||. |+ .|||+.|++ |..+|.|.|+||.|..+
T Consensus 9 e~~~C-~C~~~~~g~mi~CD~cdC~~~wfH~~Cvg--l~~~p~g~w~C~~C~~~ 59 (60)
T 2vnf_A 9 EPTYC-LCHQVSYGEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQE 59 (60)
T ss_dssp CCEET-TTTEECCSEEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC-
T ss_pred CCCEE-ECCCcCCCCEEEeCCCCCCCceEehhcCC--CCcCCCCCEECcCccCc
Confidence 34567 7988 578999999 66 899999999 88999999999999754
No 126
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=98.59 E-value=4.1e-09 Score=105.60 Aligned_cols=55 Identities=35% Similarity=0.866 Sum_probs=48.4
Q ss_pred CCCCcccccccccccCCCceEEcCCCCCcccccccCCCC-----CCC--CCCCccCcccccc
Q 042857 68 KKGNDGYYYECVICDLGGNLLCCDSCPRTYHLQCLDPPL-----KRI--PNGKWQCPKCTQK 122 (1404)
Q Consensus 68 ~~~~d~~~~~C~~C~~~g~ll~Cd~C~~~~H~~Cl~Ppl-----~~~--P~g~W~C~~C~~~ 122 (1404)
..++|+++.+|.+|.+||+|++||.|+++||..|+.|++ .++ |.+.|+|+.|..+
T Consensus 50 ~~d~Dg~~~~C~vC~dGG~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~~ 111 (129)
T 3ql9_A 50 SRDSDGMDEQCRWCAEGGNLICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHPE 111 (129)
T ss_dssp CBCTTSCBSSCTTTCCCSEEEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCCG
T ss_pred ccCCCCCCCcCeecCCCCeeEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCCH
Confidence 356688899999999999999999999999999999985 344 8899999999764
No 127
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=98.57 E-value=1.6e-08 Score=89.17 Aligned_cols=46 Identities=39% Similarity=1.066 Sum_probs=39.6
Q ss_pred cccccccccC--CCceEEcCC--CC-CcccccccCCCCCCCCCCCccCcccccc
Q 042857 74 YYYECVICDL--GGNLLCCDS--CP-RTYHLQCLDPPLKRIPNGKWQCPKCTQK 122 (1404)
Q Consensus 74 ~~~~C~~C~~--~g~ll~Cd~--C~-~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~ 122 (1404)
...+| +|++ .|.||.||. |+ .|||+.|++ |+..|.|.|+||.|..+
T Consensus 10 e~~yC-~C~~~~~g~MI~CD~c~C~~~WfH~~Cvg--l~~~p~~~w~Cp~C~~~ 60 (62)
T 2g6q_A 10 EPTYC-LCNQVSYGEMIGCDNEQCPIEWFHFSCVS--LTYKPKGKWYCPKCRGD 60 (62)
T ss_dssp CCEET-TTTEECCSEEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHTC
T ss_pred CCcEE-ECCCCCCCCeeeeeCCCCCcccEecccCC--cCcCCCCCEECcCcccC
Confidence 34567 7988 678999999 66 999999999 78889999999999764
No 128
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=98.56 E-value=2e-07 Score=115.70 Aligned_cols=143 Identities=18% Similarity=0.115 Sum_probs=95.6
Q ss_pred CCCCCHHHHHHHHHHHHhhccCCcEEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEeCCCCh-HHHHHHHHHHC--C
Q 042857 753 GGALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLSTM-PNWLAEFALWA--P 829 (1404)
Q Consensus 753 g~~L~pyQlegVnwL~~~~~~~~~~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP~Sll-~nW~rEf~kw~--P 829 (1404)
|.++||+|.+.+.-+...+..++++|+...+|.|||+.++..+.. ...++||++|+..+ .||.+++..+. .
T Consensus 1 ~~~~r~~Q~~~~~~v~~~l~~~~~~~~~a~TGtGKT~~~l~p~l~------~~~~v~i~~pt~~l~~q~~~~~~~l~~~~ 74 (551)
T 3crv_A 1 MVKLRDWQEKLKDKVIEGLRNNFLVALNAPTGSGKTLFSLLVSLE------VKPKVLFVVRTHNEFYPIYRDLTKIREKR 74 (551)
T ss_dssp CCSCCHHHHHHHHHHHHHHHTTCEEEEECCTTSSHHHHHHHHHHH------HCSEEEEEESSGGGHHHHHHHHTTCCCSS
T ss_pred CCCCCHHHHHHHHHHHHHHHcCCcEEEECCCCccHHHHHHHHHHh------CCCeEEEEcCCHHHHHHHHHHHHHHhhhc
Confidence 347999999999888888888999999999999999988766554 24589999998755 89999998774 2
Q ss_pred CCcEEEEecchhHHHHHHH-------------hh-hccCCCCc------------------------cccccCCCCceEE
Q 042857 830 NLNVVEYHGCAKARAIIRQ-------------YE-WHASDPDN------------------------LNKKTSSYKFNVL 871 (1404)
Q Consensus 830 ~l~Vvvy~G~~~~R~~ir~-------------~E-~~~~~~~~------------------------~~~~~~~~kfdVv 871 (1404)
.++++++.|.... .+.. .. |....... ...+......+||
T Consensus 75 ~~~~~~l~gr~~~--c~~~~~~~~~~~~~c~~c~~~~~~~~~g~~~~~~~~~~~~~~~G~~~~~Cpy~~ar~~~~~adIV 152 (551)
T 3crv_A 75 NITFSFLVGKPSS--CLYAEKGAESEDIPCKYCELKGSIVEVKTDDSPLSLVKKLKKDGLQDKFCPYYSLLNSLYKADVI 152 (551)
T ss_dssp CCCEEECCCHHHH--CTTBCTTCCGGGCCGGGCTTTTCCCCCCCCSCHHHHHHHHHHHHHHHTCCHHHHHHHHGGGCSEE
T ss_pred CccEEEEcccccc--CcCchhcCCCcccccCCCCCccccccccccCCHHHHHHHHHHcCCcCCcCccHHHHhhhhcCCEE
Confidence 5778877774321 0000 00 00000000 0000111356999
Q ss_pred EeeHHHHHhhhc--ccc-CCCceEEEEccccccCC
Q 042857 872 LTTYEMILADSS--HLR-GVPWEVLVVDEGHRLKN 903 (1404)
Q Consensus 872 ITTYe~l~~d~~--~L~-~i~w~lVIVDEAHrlKN 903 (1404)
|+||..+..+.. .+. .....+|||||||+|-+
T Consensus 153 V~~~~~l~~~~~~~~~~~~~~~~~vIiDEAHnl~d 187 (551)
T 3crv_A 153 ALTYPYFFIDRYREFIDIDLREYMIVIDEAHNLDK 187 (551)
T ss_dssp EEETHHHHCHHHHTTSCCCSTTEEEEETTGGGGGG
T ss_pred EeCchHhcCHHHHHhcCCCcCCeEEEEecccchHH
Confidence 999999987631 121 13567899999999976
No 129
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=98.52 E-value=2e-07 Score=102.70 Aligned_cols=150 Identities=17% Similarity=0.135 Sum_probs=90.6
Q ss_pred CCCHHHHHHHHHHHHhhccCCcEEEEcCCCchHHHHHHHHHHHHHhhccC--CCcEEEEeCCCCh-HHHHHHHHHHCCC-
Q 042857 755 ALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKA--KLPCLVLVPLSTM-PNWLAEFALWAPN- 830 (1404)
Q Consensus 755 ~L~pyQlegVnwL~~~~~~~~~~ILADEMGLGKTiqaIa~L~~L~~~~~~--~gP~LIVvP~Sll-~nW~rEf~kw~P~- 830 (1404)
.++++|.+++..+.. +...++..++|.|||.+...++......... ...+|+++|...+ .+..+.+......
T Consensus 61 p~~~~q~~~i~~i~~----g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~~~~~~~~~~~ 136 (235)
T 3llm_A 61 PVKKFESEILEAISQ----NSVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVAFERGEE 136 (235)
T ss_dssp GGGGGHHHHHHHHHH----CSEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHHHHHHHTTTCC
T ss_pred ChHHHHHHHHHHHhc----CCEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHHHHHHHHhccc
Confidence 478999999988765 7889999999999998766665543322221 2357888898655 4565666554421
Q ss_pred Cc-EEEEecchhHHHHHHHhhhccCCCCccccccCCCCceEEEeeHHHHHhhhccccCCCceEEEEcccccc-CCCcc--
Q 042857 831 LN-VVEYHGCAKARAIIRQYEWHASDPDNLNKKTSSYKFNVLLTTYEMILADSSHLRGVPWEVLVVDEGHRL-KNSGS-- 906 (1404)
Q Consensus 831 l~-Vvvy~G~~~~R~~ir~~E~~~~~~~~~~~~~~~~kfdVvITTYe~l~~d~~~L~~i~w~lVIVDEAHrl-KN~~S-- 906 (1404)
+. .+-|.- ...........+|+|+|++.+...... .--++++|||||||++ -+.+.
T Consensus 137 ~~~~~g~~~-------------------~~~~~~~~~~~~Ivv~Tpg~l~~~l~~-~l~~~~~lVlDEah~~~~~~~~~~ 196 (235)
T 3llm_A 137 PGKSCGYSV-------------------RFESILPRPHASIMFCTVGVLLRKLEA-GIRGISHVIVDEIHERDINTDFLL 196 (235)
T ss_dssp TTSSEEEEE-------------------TTEEECCCSSSEEEEEEHHHHHHHHHH-CCTTCCEEEECCTTSCCHHHHHHH
T ss_pred cCceEEEee-------------------chhhccCCCCCeEEEECHHHHHHHHHh-hhcCCcEEEEECCccCCcchHHHH
Confidence 11 011100 000111124578999999888765322 1245689999999984 21111
Q ss_pred -HHHHHHhhcccccEEEEeccCC
Q 042857 907 -KLFSLLNSFSFQHRVLLTGTPL 928 (1404)
Q Consensus 907 -k~~~~L~~l~~~~rLLLTGTPl 928 (1404)
.+...+........+++|||+-
T Consensus 197 ~~l~~i~~~~~~~~~il~SAT~~ 219 (235)
T 3llm_A 197 VVLRDVVQAYPEVRIVLMSATID 219 (235)
T ss_dssp HHHHHHHHHCTTSEEEEEECSSC
T ss_pred HHHHHHHhhCCCCeEEEEecCCC
Confidence 1122222333445789999973
No 130
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=98.51 E-value=6.7e-08 Score=93.09 Aligned_cols=45 Identities=27% Similarity=0.804 Sum_probs=39.1
Q ss_pred ccccccCCCceEEcCCCCCcccccccCCCCCCCCCCCccCcccccc
Q 042857 77 ECVICDLGGNLLCCDSCPRTYHLQCLDPPLKRIPNGKWQCPKCTQK 122 (1404)
Q Consensus 77 ~C~~C~~~g~ll~Cd~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~ 122 (1404)
+|..|..+|.||+||.|++|||+.|++|++..+| +.|+|+.|..+
T Consensus 32 iC~~~~~~~~mi~Cd~C~~w~H~~C~~~~~~~~p-~~w~C~~C~~~ 76 (98)
T 2lv9_A 32 ICGFTHDDGYMICCDKCSVWQHIDCMGIDRQHIP-DTYLCERCQPR 76 (98)
T ss_dssp TTSCCSCSSCEEEBTTTCBEEETTTTTCCTTSCC-SSBCCTTTSSS
T ss_pred ECCCccCCCcEEEcCCCCCcCcCcCCCCCccCCC-CCEECCCCcCC
Confidence 4666666788999999999999999999998888 48999999755
No 131
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=98.42 E-value=7.4e-08 Score=90.88 Aligned_cols=46 Identities=35% Similarity=0.862 Sum_probs=38.6
Q ss_pred ccccccccccC--CCceEEcCCCC---CcccccccCCCCCCCCCCCccCcc-ccc
Q 042857 73 GYYYECVICDL--GGNLLCCDSCP---RTYHLQCLDPPLKRIPNGKWQCPK-CTQ 121 (1404)
Q Consensus 73 ~~~~~C~~C~~--~g~ll~Cd~C~---~~~H~~Cl~Ppl~~~P~g~W~C~~-C~~ 121 (1404)
....+| +|++ .|+||+||.|+ .|||+.|++ |+..|.|.||||. |..
T Consensus 24 ~~~~yC-iC~~~~~g~MI~CD~c~C~~eWfH~~CVg--l~~~p~~~W~Cp~cC~~ 75 (90)
T 2jmi_A 24 QEEVYC-FCRNVSYGPMVACDNPACPFEWFHYGCVG--LKQAPKGKWYCSKDCKE 75 (90)
T ss_dssp CCSCCS-TTTCCCSSSEECCCSSSCSCSCEETTTSS--CSSCTTSCCCSSHHHHH
T ss_pred CCCcEE-EeCCCCCCCEEEecCCCCccccCcCccCC--CCcCCCCCccCChhhcc
Confidence 344567 7886 46899999965 899999999 8889999999999 963
No 132
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=98.41 E-value=1.2e-07 Score=93.26 Aligned_cols=49 Identities=35% Similarity=0.929 Sum_probs=44.3
Q ss_pred cccccccccccCCCce---EEcCCCCCcccccccCCCCCCCCCCCccCcccc
Q 042857 72 DGYYYECVICDLGGNL---LCCDSCPRTYHLQCLDPPLKRIPNGKWQCPKCT 120 (1404)
Q Consensus 72 d~~~~~C~~C~~~g~l---l~Cd~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~ 120 (1404)
+.++.+|.+|+.+|++ |+|+.|+++||++|+.|++..+|.+.|+|+.|.
T Consensus 4 ~~~~~~C~~C~~~g~~~~ll~C~~C~~~~H~~Cl~~~~~~~~~~~W~C~~C~ 55 (111)
T 2ysm_A 4 GSSGANCAVCDSPGDLLDQFFCTTCGQHYHGMCLDIAVTPLKRAGWQCPECK 55 (111)
T ss_dssp CCCCSCBTTTCCCCCTTTSEECSSSCCEECTTTTTCCCCTTTSTTCCCTTTC
T ss_pred CCCCCCCcCCCCCCCCcCCeECCCCCCCcChHHhCCccccccccCccCCcCC
Confidence 4566789999999875 999999999999999999988889999999986
No 133
>1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.11 E-value=7e-07 Score=80.65 Aligned_cols=45 Identities=36% Similarity=0.940 Sum_probs=37.0
Q ss_pred ccccccccC--CCceEEcCCCC---CcccccccCCCCCCCCCCCccCcccccc
Q 042857 75 YYECVICDL--GGNLLCCDSCP---RTYHLQCLDPPLKRIPNGKWQCPKCTQK 122 (1404)
Q Consensus 75 ~~~C~~C~~--~g~ll~Cd~C~---~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~ 122 (1404)
..+|. |+. .|.||.||.|+ .|||+.|+. |...|.+.||||.|...
T Consensus 6 ~~yC~-C~~~~~g~MI~CD~cdC~~~WfH~~Cvg--l~~~p~~~w~Cp~C~~~ 55 (70)
T 1x4i_A 6 SGYCI-CNQVSYGEMVGCDNQDCPIEWFHYGCVG--LTEAPKGKWYCPQCTAA 55 (70)
T ss_dssp CCCST-TSCCCCSSEECCSCTTCSCCCEEHHHHT--CSSCCSSCCCCHHHHHH
T ss_pred CeEEE-cCCCCCCCEeEeCCCCCCccCCcccccc--cCcCCCCCEECCCCCcc
Confidence 34564 765 46899999975 899999999 77889999999999764
No 134
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=97.96 E-value=3.1e-06 Score=75.04 Aligned_cols=52 Identities=27% Similarity=0.687 Sum_probs=39.4
Q ss_pred ccccccccccCC----CceEEcCCCCCcccccccCCCCCCCC-CCCccCcccccccc
Q 042857 73 GYYYECVICDLG----GNLLCCDSCPRTYHLQCLDPPLKRIP-NGKWQCPKCTQKND 124 (1404)
Q Consensus 73 ~~~~~C~~C~~~----g~ll~Cd~C~~~~H~~Cl~Ppl~~~P-~g~W~C~~C~~~~~ 124 (1404)
....+|.+|+.+ +.||.||.|..|||..|+........ .+.|+|+.|..+..
T Consensus 4 ~e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k~~ 60 (64)
T 1we9_A 4 GSSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNKSG 60 (64)
T ss_dssp SSCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTTTC
T ss_pred CCCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcCcCC
Confidence 344578888874 45999999999999999995433222 37899999987643
No 135
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=97.92 E-value=5.1e-06 Score=74.60 Aligned_cols=48 Identities=23% Similarity=0.556 Sum_probs=37.7
Q ss_pred cccccccccccCC---CceEEcCCCCCcccccccCCCCCCCCCCCccCccccc
Q 042857 72 DGYYYECVICDLG---GNLLCCDSCPRTYHLQCLDPPLKRIPNGKWQCPKCTQ 121 (1404)
Q Consensus 72 d~~~~~C~~C~~~---g~ll~Cd~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~ 121 (1404)
+....+| +|+.+ +.||.||.|..|||..|++.....+| +.|+|+.|..
T Consensus 16 ~~~~~~C-iC~~~~~~~~MIqCd~C~~WfH~~Cvgi~~~~~~-~~~~C~~C~~ 66 (68)
T 3o70_A 16 FQGLVTC-FCMKPFAGRPMIECNECHTWIHLSCAKIRKSNVP-EVFVCQKCRD 66 (68)
T ss_dssp TTTCCCS-TTCCCCTTCCEEECTTTCCEEETTTTTCCTTSCC-SSCCCHHHHT
T ss_pred CCCceEe-ECCCcCCCCCEEECCCCCccccccccCcCcccCC-CcEECCCCCC
Confidence 3444567 78774 34999999999999999996655555 7899999975
No 136
>2rsn_A Chromo domain-containing protein 1; chromodomain, protein-peptide complex, RNA-mediated gene SIL chromosomal protein, methylation; HET: M3L; NMR {Schizosaccharomyces pombe}
Probab=97.91 E-value=2.3e-06 Score=78.24 Aligned_cols=54 Identities=20% Similarity=0.433 Sum_probs=43.3
Q ss_pred hhccchhhhhhhccCCCCcceeeeccCCCCCCcccccCCCchHHHhhHHHHHHHHH
Q 042857 659 ERWKQPQRVISLRSSKDGTREAFVKWTGLPYDECTWEKLDEPALEKYSHLTDLFVQ 714 (1404)
Q Consensus 659 ~e~~~~eRii~~r~~~~~~~eylVKW~gL~Y~~~TWE~~~~~~~~~~~~li~~~~~ 714 (1404)
.+...+++||++|...+|..+|||||+|++++++|||..+. +.....+++.|.+
T Consensus 19 ~e~yeVE~Il~~r~~~~g~~~YlVkWkGy~~~~~TWEp~~n--l~~~~~li~~f~~ 72 (75)
T 2rsn_A 19 ADVYEVEDILADRVNKNGINEYYIKWAGYDWYDNTWEPEQN--LFGAEKVLKKWKK 72 (75)
T ss_dssp GGCEEEEEEEEEEECSSSCEEEEEEEESSCGGGCEEEEGGG--GTTTHHHHHHHHH
T ss_pred CceEEEEEEEEEEEcCCCcEEEEEEECCCCCcCCeeecHHH--ccChHHHHHHHHH
Confidence 45568999999998777889999999999999999996432 4445677877764
No 137
>2dnt_A Chromodomain protein, Y chromosome-like, isoform B; histone H3 tail, choromatin organization modifier, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.13.2
Probab=97.87 E-value=3.6e-06 Score=77.64 Aligned_cols=55 Identities=25% Similarity=0.474 Sum_probs=43.8
Q ss_pred hhccchhhhhhhccCCCCcceeeeccCCCCCCcccccCCCchHHHhhHHHHHHHHHH
Q 042857 659 ERWKQPQRVISLRSSKDGTREAFVKWTGLPYDECTWEKLDEPALEKYSHLTDLFVQF 715 (1404)
Q Consensus 659 ~e~~~~eRii~~r~~~~~~~eylVKW~gL~Y~~~TWE~~~~~~~~~~~~li~~~~~~ 715 (1404)
.+...|++||++|....+..+|||||+|++++++|||..+. +...+.+|+.|...
T Consensus 11 ~~~y~VE~Il~~r~~~~g~~~YlVKWkGy~~~~~TWEp~~~--l~~~~~li~~f~~~ 65 (78)
T 2dnt_A 11 EELYEVERIVDKRKNKKGKTEYLVRWKGYDSEDDTWEPEQH--LVNCEEYIHDFNRR 65 (78)
T ss_dssp SCSCCCCCEEEEEECTTSCEEEEECBTTBCGGGCEEEETTT--CTTCHHHHHHHHHH
T ss_pred CceEEEEEEEEEEEcCCCcEEEEEEECCCCccCCceecHHH--HHhHHHHHHHHHhh
Confidence 34568999999987667889999999999999999997543 33467778877654
No 138
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=97.84 E-value=4.3e-05 Score=96.20 Aligned_cols=84 Identities=26% Similarity=0.279 Sum_probs=65.5
Q ss_pred CCCHHHHHHHHHHHHhhccCCcEEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEeCCCC-hHHHHHHHHHHC--CCC
Q 042857 755 ALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLST-MPNWLAEFALWA--PNL 831 (1404)
Q Consensus 755 ~L~pyQlegVnwL~~~~~~~~~~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP~Sl-l~nW~rEf~kw~--P~l 831 (1404)
++||+|.+.+.-+...+..+.++|+...+|.|||+.++..+....... ..+++|++|+.. ..|+.+++.++. ..+
T Consensus 3 ~~R~~Q~~~~~~v~~~l~~~~~~~~~apTGtGKT~a~l~p~l~~~~~~--~~kvli~t~T~~l~~Qi~~el~~l~~~~~~ 80 (620)
T 4a15_A 3 ENRQYQVEAIDFLRSSLQKSYGVALESPTGSGKTIMALKSALQYSSER--KLKVLYLVRTNSQEEQVIKELRSLSSTMKI 80 (620)
T ss_dssp --CHHHHHHHHHHHHHHHHSSEEEEECCTTSCHHHHHHHHHHHHHHHH--TCEEEEEESSHHHHHHHHHHHHHHHHHSCC
T ss_pred CCCHHHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHhhhhc--CCeEEEECCCHHHHHHHHHHHHHHhhccCe
Confidence 579999999998888888899999999999999998877655544332 347999999865 489999998774 368
Q ss_pred cEEEEecch
Q 042857 832 NVVEYHGCA 840 (1404)
Q Consensus 832 ~Vvvy~G~~ 840 (1404)
+++++.|..
T Consensus 81 ~~~~l~gr~ 89 (620)
T 4a15_A 81 RAIPMQGRV 89 (620)
T ss_dssp CEEECCCHH
T ss_pred EEEEEECCC
Confidence 888777744
No 139
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=97.83 E-value=3.5e-06 Score=82.05 Aligned_cols=46 Identities=24% Similarity=0.782 Sum_probs=38.5
Q ss_pred cccccccCC----CceEEcC-CCCCcccccccCCCCCC--------CCCCCccCccccccc
Q 042857 76 YECVICDLG----GNLLCCD-SCPRTYHLQCLDPPLKR--------IPNGKWQCPKCTQKN 123 (1404)
Q Consensus 76 ~~C~~C~~~----g~ll~Cd-~C~~~~H~~Cl~Ppl~~--------~P~g~W~C~~C~~~~ 123 (1404)
+.|.+|+++ +.|+.|| .|..|||..|++ |+. -|.+.|+||.|..+.
T Consensus 4 ~~C~iC~~p~~~~~~mi~Cdd~C~~WfH~~CVg--lt~~~~~~i~~~~~~~~~Cp~C~~~~ 62 (105)
T 2xb1_A 4 YPCGACRSEVNDDQDAILCEASCQKWFHRECTG--MTESAYGLLTTEASAVWACDLCLKTK 62 (105)
T ss_dssp CBCTTTCSBCCTTSCEEECTTTTCCEEEGGGTT--CCHHHHHHHHHCTTEEECCHHHHHTT
T ss_pred CCCCCCCCccCCCCCEEEecCCcccccccccCC--cCHHHHHhhccCCCCCEECccccCcC
Confidence 469999987 5699998 999999999999 543 367899999998763
No 140
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=97.82 E-value=9.5e-06 Score=73.65 Aligned_cols=51 Identities=25% Similarity=0.615 Sum_probs=39.0
Q ss_pred CcccccccccccCC---C-ceEEcCCCCCcccccccCCCCCCCCCCCccCcccccc
Q 042857 71 NDGYYYECVICDLG---G-NLLCCDSCPRTYHLQCLDPPLKRIPNGKWQCPKCTQK 122 (1404)
Q Consensus 71 ~d~~~~~C~~C~~~---g-~ll~Cd~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~ 122 (1404)
.+.+..+| +|+.. | .||.||.|..|||..|+...........|+|+.|..+
T Consensus 12 ~~~~~~~C-~C~~~~~~g~~mI~Cd~C~~W~H~~Cvg~~~~~~~~~~~~C~~C~~~ 66 (72)
T 1wee_A 12 VDNWKVDC-KCGTKDDDGERMLACDGCGVWHHTRCIGINNADALPSKFLCFRCIEL 66 (72)
T ss_dssp SCSSEECC-TTCCCSCCSSCEEECSSSCEEEETTTTTCCTTSCCCSCCCCHHHHHH
T ss_pred CCCcceEe-eCCCccCCCCcEEECCCCCCccCCeeeccCccccCCCcEECCCccCC
Confidence 34556678 59875 4 4999999999999999995533223488999999865
No 141
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=97.79 E-value=4.1e-06 Score=76.84 Aligned_cols=50 Identities=28% Similarity=0.707 Sum_probs=38.4
Q ss_pred CcccccccccccCC---CceEEcCCCCCcccccccCCCCCCC-------CCCCccCccccccc
Q 042857 71 NDGYYYECVICDLG---GNLLCCDSCPRTYHLQCLDPPLKRI-------PNGKWQCPKCTQKN 123 (1404)
Q Consensus 71 ~d~~~~~C~~C~~~---g~ll~Cd~C~~~~H~~Cl~Ppl~~~-------P~g~W~C~~C~~~~ 123 (1404)
.|.+..+| +|+.+ +.||.||.|..|||..|+.. ... +...|+|+.|..+.
T Consensus 12 ~d~~~~~C-~C~~~~~~~~MI~Cd~C~~WfH~~Cvgl--~~~~~~~l~~~~~~~~C~~C~~~~ 71 (76)
T 1wem_A 12 YDPNALYC-ICRQPHNNRFMICCDRCEEWFHGDCVGI--SEARGRLLERNGEDYICPNCTILS 71 (76)
T ss_dssp CCTTCCCS-TTCCCCCSSCEEECSSSCCEEEHHHHSC--CHHHHHHHHHHTCCCCCHHHHHHS
T ss_pred cCCCCCEE-ECCCccCCCCEEEeCCCCCcEeCeEEcc--chhhhhhccCCCCeEECcCCcCcc
Confidence 34455678 68875 46999999999999999994 332 24789999998654
No 142
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=97.74 E-value=3.9e-06 Score=82.99 Aligned_cols=44 Identities=36% Similarity=0.816 Sum_probs=36.7
Q ss_pred ccccccCC----------CceEEcCCCCCcccccccCCCCC---CCCCCCccCcccc
Q 042857 77 ECVICDLG----------GNLLCCDSCPRTYHLQCLDPPLK---RIPNGKWQCPKCT 120 (1404)
Q Consensus 77 ~C~~C~~~----------g~ll~Cd~C~~~~H~~Cl~Ppl~---~~P~g~W~C~~C~ 120 (1404)
+|.+|..+ ++||+|+.|+++||++|+.+++. .+|.+.|+|+.|.
T Consensus 3 ~C~~C~~~~~~n~k~g~~~~Li~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~ 59 (114)
T 2kwj_A 3 YCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFTLNMTEAVKTYKWQCIECK 59 (114)
T ss_dssp CCSSSCCBTTBCTTTCCCCCCEECSSSCCEECTTTTTCCHHHHHHHHHTTCCCGGGC
T ss_pred cCccCCCCccccccCCCCCCCeEeCCCCCccchhhCCChhhhhhccCCCccCccccC
Confidence 57777654 37999999999999999997642 5778999999995
No 143
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=97.73 E-value=3.1e-06 Score=89.65 Aligned_cols=50 Identities=24% Similarity=0.577 Sum_probs=37.8
Q ss_pred ccccccccccCC----CceEEcCCCCCcccccccCCCCCC-CCCCCccCccccccc
Q 042857 73 GYYYECVICDLG----GNLLCCDSCPRTYHLQCLDPPLKR-IPNGKWQCPKCTQKN 123 (1404)
Q Consensus 73 ~~~~~C~~C~~~----g~ll~Cd~C~~~~H~~Cl~Ppl~~-~P~g~W~C~~C~~~~ 123 (1404)
....+| +|+.+ |.|++||.|++|||..|++.+... .+.+.|+|+.|....
T Consensus 6 ~~~~~C-~C~~~~~~~~~mi~Cd~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~~~ 60 (174)
T 2ri7_A 6 DTKLYC-ICKTPEDESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQSTE 60 (174)
T ss_dssp -CCEET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTCSSCCCHHHHHHH
T ss_pred CCCcEe-eCCCCCCCCCCEeECCCCCchhChhhcCCchhhccCccCeecCCCcchh
Confidence 445678 88875 349999999999999999843222 235899999998754
No 144
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=97.66 E-value=5e-06 Score=73.97 Aligned_cols=45 Identities=27% Similarity=0.754 Sum_probs=36.5
Q ss_pred cccccccccCCC----ceEEcC-CCCCcccccccCCCCCC--------CCCCCccCcccc
Q 042857 74 YYYECVICDLGG----NLLCCD-SCPRTYHLQCLDPPLKR--------IPNGKWQCPKCT 120 (1404)
Q Consensus 74 ~~~~C~~C~~~g----~ll~Cd-~C~~~~H~~Cl~Ppl~~--------~P~g~W~C~~C~ 120 (1404)
....|.+|+++- .|+.|| .|.+|||..|++ |+. -|.+.|+|+.|.
T Consensus 7 ~~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cvg--lt~~~~~~l~~e~~~~w~C~~C~ 64 (65)
T 2vpb_A 7 PVYPCGICTNEVNDDQDAILCEASCQKWFHRICTG--MTETAYGLLTAEASAVWGCDTCM 64 (65)
T ss_dssp --CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHHT--CCHHHHHHHHHCTTEEECCHHHH
T ss_pred CcCcCccCCCccCCCCCeEecccCccccCchhccC--CCHHHHHHhhccCCCcEECcCcc
Confidence 344699999862 399999 999999999999 554 377899999996
No 145
>1g6z_A CLR4 protein; transferase; NMR {Schizosaccharomyces pombe} SCOP: b.34.13.2
Probab=97.65 E-value=1.7e-05 Score=71.67 Aligned_cols=53 Identities=15% Similarity=0.370 Sum_probs=42.0
Q ss_pred hccchhhhhhhccCCCCcce-eeeccCCCCCCcccccCCCchHHHhhHHHHHHHHHH
Q 042857 660 RWKQPQRVISLRSSKDGTRE-AFVKWTGLPYDECTWEKLDEPALEKYSHLTDLFVQF 715 (1404)
Q Consensus 660 e~~~~eRii~~r~~~~~~~e-ylVKW~gL~Y~~~TWE~~~~~~~~~~~~li~~~~~~ 715 (1404)
+| .|++|+++|...+|..+ |||||+|.+++++|||..+. +...+.+++.|...
T Consensus 8 ey-~VE~Il~~r~~~~g~~~~YlVKWkGy~~~~~TWEp~en--L~~~~~li~~f~~~ 61 (70)
T 1g6z_A 8 EY-EVERIVDEKLDRNGAVKLYRIRWLNYSSRSDTWEPPEN--LSGCSAVLAEWKRR 61 (70)
T ss_dssp SS-CCCSCSEEECCTTSSCCEEEECCTTTTSSCCEEECGGG--GSSCHHHHHHHHHH
T ss_pred eE-EEEEEEEEEEcCCCcEEEEEEEECCCCCCCCceecHHH--HhhhHHHHHHHHHh
Confidence 44 89999999987657777 99999999999999996543 43567778877654
No 146
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=97.62 E-value=1.8e-05 Score=72.95 Aligned_cols=48 Identities=21% Similarity=0.594 Sum_probs=37.4
Q ss_pred ccccccccccCC---CceEEcC--CCCCcccccccCCCCCCCC-------CCCccCccccccc
Q 042857 73 GYYYECVICDLG---GNLLCCD--SCPRTYHLQCLDPPLKRIP-------NGKWQCPKCTQKN 123 (1404)
Q Consensus 73 ~~~~~C~~C~~~---g~ll~Cd--~C~~~~H~~Cl~Ppl~~~P-------~g~W~C~~C~~~~ 123 (1404)
....+| +|+.. |.||.|| .|..|||..|+. ++..| ...|+|+.|+...
T Consensus 14 ~~~~~C-iC~~~~~~g~MI~CD~~~C~~W~H~~CVg--i~~~~~~~~~~~~~~~~C~~C~~~~ 73 (78)
T 1wew_A 14 EIKVRC-VCGNSLETDSMIQCEDPRCHVWQHVGCVI--LPDKPMDGNPPLPESFYCEICRLTS 73 (78)
T ss_dssp CCCCCC-SSCCCCCCSCEEECSSTTTCCEEEHHHHS--CCCTTTCSCSCSCSSCCCHHHHHCC
T ss_pred CCCEEe-ECCCcCCCCCEEEECCccCCccccCEEEc--cccccccccccCCCCEECCCCCccc
Confidence 345578 68875 6699999 999999999999 44433 2689999998653
No 147
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=97.53 E-value=1.6e-05 Score=72.57 Aligned_cols=51 Identities=25% Similarity=0.581 Sum_probs=41.8
Q ss_pred cccccccccc--CCCceEEcCCCCCcccccccCCC------------CCCCCCCCccCccccccc
Q 042857 73 GYYYECVICD--LGGNLLCCDSCPRTYHLQCLDPP------------LKRIPNGKWQCPKCTQKN 123 (1404)
Q Consensus 73 ~~~~~C~~C~--~~g~ll~Cd~C~~~~H~~Cl~Pp------------l~~~P~g~W~C~~C~~~~ 123 (1404)
.++..|.+|. ..++++.|..|.|.||..|+.++ +...+..-|.|+.|.+-.
T Consensus 13 ~~D~~C~VC~~~t~~~l~pCRvC~RvfH~~CL~r~gy~~~~~a~e~~l~A~T~~GWSC~~CenL~ 77 (89)
T 1wil_A 13 VNDEMCDVCEVWTAESLFPCRVCTRVFHDGCLRRMGYIQGDSAAEVTEMAHTETGWSCHYCDNIN 77 (89)
T ss_dssp CCSCCCTTTCCCCSSCCSSCSSSSSCCCHHHHHHHTSCCCCCCCSCSCCCSSSSSCCCTTTCCCC
T ss_pred CCCcccCccccccccceeccccccccccHhhcccccccccHHHHHHHHccCCCCCccccccchhh
Confidence 3566788898 46779999999999999999986 555677889999996543
No 148
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=97.52 E-value=2.5e-05 Score=72.17 Aligned_cols=50 Identities=18% Similarity=0.440 Sum_probs=36.6
Q ss_pred ccccccccccCC----CceEEcCCCCCcccccccCCCCCCC-CCCCccCccccccc
Q 042857 73 GYYYECVICDLG----GNLLCCDSCPRTYHLQCLDPPLKRI-PNGKWQCPKCTQKN 123 (1404)
Q Consensus 73 ~~~~~C~~C~~~----g~ll~Cd~C~~~~H~~Cl~Ppl~~~-P~g~W~C~~C~~~~ 123 (1404)
....+| +|+.+ +.||.||.|..|||..|+.-..... ..+.|+|+.|....
T Consensus 10 ~~~~~C-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~ 64 (79)
T 1wep_A 10 LVPVYC-LCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVF 64 (79)
T ss_dssp CCCCCS-TTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTS
T ss_pred CCccEE-EcCCccCCCCceEEcCCCCCcEEeeecCcccccccCCCeEECCCccccc
Confidence 344467 68774 4599999999999999999332211 13789999998764
No 149
>2dnv_A Chromobox protein homolog 8; chromo domain, histone H3 tail, choromatin organization modifier, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: b.34.13.2
Probab=97.51 E-value=2.7e-05 Score=69.04 Aligned_cols=48 Identities=25% Similarity=0.423 Sum_probs=37.3
Q ss_pred cchhhhhhhccCCCCcceeeeccCCCCCCcccccCCCchHHHhhHHHHHHHH
Q 042857 662 KQPQRVISLRSSKDGTREAFVKWTGLPYDECTWEKLDEPALEKYSHLTDLFV 713 (1404)
Q Consensus 662 ~~~eRii~~r~~~~~~~eylVKW~gL~Y~~~TWE~~~~~~~~~~~~li~~~~ 713 (1404)
..|++||++|.. .+..+|||||+|+++.++|||..+. +. ...+|+.|.
T Consensus 11 y~VE~Il~~r~~-~g~~~YlVKWkGy~~~~~TWEp~~~--l~-~~~li~~f~ 58 (64)
T 2dnv_A 11 FAAEALLKRRIR-KGRMEYLVKWKGWSQKYSTWEPEEN--IL-DARLLAAFE 58 (64)
T ss_dssp CCCCCEEEEEES-SSSEEEEECCSSCCCSSCCEEETTT--CC-CHHHHHHHH
T ss_pred EEEEEEEEEEEe-CCcEEEEEEECCCCcccCCccCHhH--CC-CHHHHHHHH
Confidence 389999999874 5778999999999999999996543 22 245676664
No 150
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2
Probab=97.44 E-value=3.2e-05 Score=70.73 Aligned_cols=52 Identities=23% Similarity=0.673 Sum_probs=37.5
Q ss_pred cccccccccccCC----CceEEcCCCCCcccccccCCCCCCCCC-CCccCcccccccc
Q 042857 72 DGYYYECVICDLG----GNLLCCDSCPRTYHLQCLDPPLKRIPN-GKWQCPKCTQKND 124 (1404)
Q Consensus 72 d~~~~~C~~C~~~----g~ll~Cd~C~~~~H~~Cl~Ppl~~~P~-g~W~C~~C~~~~~ 124 (1404)
+....+| +|+.+ +.||.||.|..|||..|++-.....+. ..|+|+.|.....
T Consensus 7 ~~~~~yC-iC~~~~~~~~~MI~Cd~C~~WfH~~Cvg~~~~~~~~~~~~~C~~C~~~~~ 63 (75)
T 3kqi_A 7 ATVPVYC-VCRLPYDVTRFMIECDACKDWFHGSCVGVEEEEAPDIDIYHCPNCEKTHG 63 (75)
T ss_dssp CCCCEET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCTTTGGGBSSCCCHHHHHHHC
T ss_pred CCCeeEE-ECCCcCCCCCCEEEcCCCCCCEecccccccccccCCCCEEECCCCcccCC
Confidence 3444566 58764 359999999999999999943333332 5799999987643
No 151
>2b2y_C CHD-1, chromodomain-helicase-DNA-binding protein 1; three stranded antiparallel beta sheet, alpha helix linker, peptide binding protein; 2.35A {Homo sapiens} SCOP: b.34.13.2 PDB: 2b2u_C* 2b2v_C* 2b2t_C* 2b2w_C
Probab=97.40 E-value=8.1e-05 Score=72.83 Aligned_cols=42 Identities=43% Similarity=0.755 Sum_probs=34.3
Q ss_pred CceeEEEEEEecCccccccccCCHHHHHHH---HHHHHHHHHHhh
Q 042857 608 KAVSYEFLVKWVGKSNIHNSWIPESQLKVL---AKRKLENYKAKY 649 (1404)
Q Consensus 608 ~~~~~eylVKw~~~Sy~h~~Wv~e~~l~~~---~~~~l~~~~~k~ 649 (1404)
..+..+|||||+|+|+.||+|.|++.|... +.++|.||.++.
T Consensus 54 ~~g~~eYlVKWkG~s~~~nTWEp~enL~~~~~~g~kklenY~kk~ 98 (115)
T 2b2y_C 54 EPGEIQYLIKWKGWSHIHNTWETEETLKQQNVRGMKKLDNYKKKD 98 (115)
T ss_dssp SSCEEEEEEEETTSCGGGCEEECHHHHHHHTCBCTHHHHHHHC--
T ss_pred eCCcEEEEEEECCCCchhcccCCHHHcCCccchHHHHHHHHHHHH
Confidence 346689999999999999999999999752 356899998764
No 152
>1q3l_A Heterochromatin protein 1; chromodomain, HP1, chromatin, methyllysine, monomethyllysine, structural protein; HET: MLZ; 1.64A {Drosophila melanogaster} SCOP: b.34.13.2 PDB: 1kne_A* 1kna_A*
Probab=97.40 E-value=2.3e-05 Score=70.48 Aligned_cols=52 Identities=29% Similarity=0.532 Sum_probs=40.3
Q ss_pred hhccchhhhhhhccCCCCcceeeeccCCCCCCcccccCCCchHHHhhHHHHHHHHH
Q 042857 659 ERWKQPQRVISLRSSKDGTREAFVKWTGLPYDECTWEKLDEPALEKYSHLTDLFVQ 714 (1404)
Q Consensus 659 ~e~~~~eRii~~r~~~~~~~eylVKW~gL~Y~~~TWE~~~~~~~~~~~~li~~~~~ 714 (1404)
++...|++|++.|.. .|..+|||||+|++++++|||..+. + ..+.+|+.|..
T Consensus 14 ~~ey~VEkIld~R~~-~g~~eYlVKWkGy~~~~~TWEp~en--L-~c~~lI~~F~~ 65 (69)
T 1q3l_A 14 EEEYAVEKIIDRRVR-KGMVEYYLKWKGYPETENTWEPENN--L-DCQDLIQQYEA 65 (69)
T ss_dssp --CEEEEEEEEEEEE-TTEEEEEEEETTSCGGGCEEEEGGG--E-ECHHHHHHHHH
T ss_pred CCcEEEEEEEEEEEE-CCeEEEEEEEcCCCcccCCccchHH--C-CCHHHHHHHHH
Confidence 445689999998874 4778999999999999999996543 3 46677877764
No 153
>1x3p_A Cpsrp43; chromo-2 domain, chloroplasts, LHCP, protein translocation, unknown function; NMR {Arabidopsis thaliana} SCOP: b.34.13.2
Probab=97.39 E-value=2.9e-05 Score=66.55 Aligned_cols=45 Identities=38% Similarity=0.666 Sum_probs=34.5
Q ss_pred chhhhhhhccCCCCcc-eeeeccCCCCCCcccccCCCchHHHhhHHHHHHHH
Q 042857 663 QPQRVISLRSSKDGTR-EAFVKWTGLPYDECTWEKLDEPALEKYSHLTDLFV 713 (1404)
Q Consensus 663 ~~eRii~~r~~~~~~~-eylVKW~gL~Y~~~TWE~~~~~~~~~~~~li~~~~ 713 (1404)
.+++|+++|...+|.. +|||||+| |+++|||..+. +. +.+|+.|.
T Consensus 2 ~VE~Ild~r~~~~g~~~~YlVKWkg--y~~~TWEp~~n--L~--~~li~~f~ 47 (54)
T 1x3p_A 2 VAESVIGKRVGDDGKTIEYLVKWTD--MSDATWEPQDN--VD--STLVLLYQ 47 (54)
T ss_dssp CSSCCCCBSSCSSSCCCCBCCCCSS--SSSCSCSTTCC--SS--SSSHHHHT
T ss_pred eEEEEEEEEEcCCCcEEEEEEEECC--CCcCCccchHH--CC--HHHHHHHH
Confidence 5789999988766777 99999998 79999997554 22 55566654
No 154
>2d9u_A Chromobox protein homolog 2 (isoform 2); chromobox homolog 2, chromo domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.37 E-value=3.7e-05 Score=70.22 Aligned_cols=52 Identities=25% Similarity=0.388 Sum_probs=40.0
Q ss_pred cchhhhhhhccCCCCcceeeeccCCCCCCcccccCCCchHHHhhHHHHHHHHHHHH
Q 042857 662 KQPQRVISLRSSKDGTREAFVKWTGLPYDECTWEKLDEPALEKYSHLTDLFVQFER 717 (1404)
Q Consensus 662 ~~~eRii~~r~~~~~~~eylVKW~gL~Y~~~TWE~~~~~~~~~~~~li~~~~~~~~ 717 (1404)
..|++|+++|.. .+..+|||||+|.++.++|||..+. +. ...+|+.|.+...
T Consensus 11 y~VE~Il~~r~~-~g~~~YlVKWkGy~~~~~TWEp~~n--l~-~~~li~~f~~~~~ 62 (74)
T 2d9u_A 11 FAAECILSKRLR-KGKLEYLVKWRGWSSKHNSWEPEEN--IL-DPRLLLAFQKKEH 62 (74)
T ss_dssp CCEEEEEEEEEE-TTEEEEEEEETTSCTTTCEEEEGGG--CC-CHHHHHHHHHHHH
T ss_pred EEEEEEEEEEEe-CCcEEEEEEECCCCCccCccccHHH--CC-CHHHHHHHHHhhh
Confidence 389999999875 4778999999999999999996443 22 2567888776543
No 155
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=97.36 E-value=1.8e-05 Score=77.90 Aligned_cols=44 Identities=32% Similarity=0.745 Sum_probs=35.0
Q ss_pred ccccccC---------CCceEEcCCCCCcccccccCC--CC-CCCCCCCccCcccc
Q 042857 77 ECVICDL---------GGNLLCCDSCPRTYHLQCLDP--PL-KRIPNGKWQCPKCT 120 (1404)
Q Consensus 77 ~C~~C~~---------~g~ll~Cd~C~~~~H~~Cl~P--pl-~~~P~g~W~C~~C~ 120 (1404)
+|.+|.. +++||.|+.|++.||++|+.+ ++ ..++.+.|+|+.|+
T Consensus 7 ~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~ 62 (112)
T 3v43_A 7 ICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLKFSPELTVRVKALRWQCIECK 62 (112)
T ss_dssp SBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHTCCHHHHHHHHTSCCCCTTTC
T ss_pred cccccCCchhhCcCCCchhceEhhhcCCCCCCchhcCCHHHHHHhhccccccccCC
Confidence 4666643 457999999999999999974 22 35678999999996
No 156
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=97.33 E-value=9.3e-05 Score=66.41 Aligned_cols=44 Identities=25% Similarity=0.696 Sum_probs=32.6
Q ss_pred cccccccC---CCceEEcCC--CCCcccccccCCCCCCCC------CCCccCcccccc
Q 042857 76 YECVICDL---GGNLLCCDS--CPRTYHLQCLDPPLKRIP------NGKWQCPKCTQK 122 (1404)
Q Consensus 76 ~~C~~C~~---~g~ll~Cd~--C~~~~H~~Cl~Ppl~~~P------~g~W~C~~C~~~ 122 (1404)
.+| +|+. .|.||.||. |..|||..|++ +...| ...|+|+.|+..
T Consensus 11 v~C-~C~~~~~~g~mI~CD~~~C~~W~H~~Cvg--i~~~~~~~~~~p~~~~C~~Cr~~ 65 (68)
T 2rsd_A 11 VRC-ICSSTMVNDSMIQCEDQRCQVWQHLNCVL--IPDKPGESAEVPPVFYCELCRLS 65 (68)
T ss_dssp ECC-TTCCCSCCSCEEECSCTTTCEEEETTTSC--CCSSTTSCCCCCSSCCCHHHHHH
T ss_pred EEe-ECCCCcCCCCEEEECCCCCCCeEchhhCC--CCcccccccCCCCcEECcCccCc
Confidence 456 5865 366999995 99999999998 32222 247999999754
No 157
>4hae_A CDY-like 2, chromodomain Y-like protein 2; protein binding, structural genomics consortiu; 2.00A {Homo sapiens}
Probab=97.33 E-value=3.2e-05 Score=71.75 Aligned_cols=40 Identities=28% Similarity=0.550 Sum_probs=34.9
Q ss_pred hhhccchhhhhhhccCCCCcceeeeccCCCCCCcccccCC
Q 042857 658 DERWKQPQRVISLRSSKDGTREAFVKWTGLPYDECTWEKL 697 (1404)
Q Consensus 658 ~~e~~~~eRii~~r~~~~~~~eylVKW~gL~Y~~~TWE~~ 697 (1404)
..+...|++||+.|...+|..+|||||+|.+++++|||..
T Consensus 20 ~~e~yeVE~Ild~R~~~~g~~~YlVKWkGy~~~~~TWEp~ 59 (81)
T 4hae_A 20 SGDLYEVERIVDKRKNKKGKWEYLIRWKGYGSTEDTWEPE 59 (81)
T ss_dssp TSCEEEEEEEEEEEECTTSCEEEEEEETTCCGGGCEEEEG
T ss_pred CCCEEEEEEEEEeEECCCCeEEEEEEECCCCCCCCeEEeH
Confidence 4456789999999987778899999999999999999954
No 158
>3mts_A Histone-lysine N-methyltransferase SUV39H1; histone methyltransferase, histone-lysine N-methyltransferas SUV39H1, histone H3, TRI-methylation; 2.20A {Homo sapiens}
Probab=97.31 E-value=5.2e-05 Score=67.22 Aligned_cols=51 Identities=24% Similarity=0.395 Sum_probs=39.2
Q ss_pred chhhhhhhccCCCCcceeeeccCCCCCCcccccCCCchHHHhhHHHHHHHHHHHH
Q 042857 663 QPQRVISLRSSKDGTREAFVKWTGLPYDECTWEKLDEPALEKYSHLTDLFVQFER 717 (1404)
Q Consensus 663 ~~eRii~~r~~~~~~~eylVKW~gL~Y~~~TWE~~~~~~~~~~~~li~~~~~~~~ 717 (1404)
.|++|+++|.. .|..+|||||+|.+++++|||..+. + ..+.++..|..-..
T Consensus 2 EVE~Il~~r~~-~g~~~YlVKWkGy~~~~~TWEp~~n--l-~c~~li~~f~~~~~ 52 (64)
T 3mts_A 2 EVEYLCDYKKI-REQEYYLVKWRGYPDSESTWEPRQN--L-KCVRILKQFHKDLE 52 (64)
T ss_dssp CEEEEEEEEEC-SSCEEEEEEETTSCGGGCEEEEGGG--C-CCHHHHHHHHHHHH
T ss_pred CceEEEEEEEe-CCeEEEEEEEecCCCcCCcEeEHHH--C-CCHHHHHHHHHHHH
Confidence 47899998875 5789999999999999999996433 2 25677777765433
No 159
>3f2u_A Chromobox protein homolog 1; human chromobox homolog 1, CBX1, structural genomics, struct genomics consortium, SGC, centromere, nucleus; 1.80A {Homo sapiens} PDB: 3tzd_A* 2l11_A* 3dm1_A*
Probab=97.25 E-value=4.4e-05 Score=65.68 Aligned_cols=48 Identities=29% Similarity=0.578 Sum_probs=38.2
Q ss_pred chhhhhhhccCCCCcceeeeccCCCCCCcccccCCCchHHHhhHHHHHHHHH
Q 042857 663 QPQRVISLRSSKDGTREAFVKWTGLPYDECTWEKLDEPALEKYSHLTDLFVQ 714 (1404)
Q Consensus 663 ~~eRii~~r~~~~~~~eylVKW~gL~Y~~~TWE~~~~~~~~~~~~li~~~~~ 714 (1404)
.+++|+++|.. .+..+|||||+|.+++++|||..+. + ..+.++..|.+
T Consensus 4 ~VE~Il~~r~~-~g~~~YlVkWkGy~~~~~TWEp~~n--l-~~~~li~~f~~ 51 (55)
T 3f2u_A 4 VVEKVLDRRVV-KGKVEYLLKWKGFSDEDNTWEPEEN--L-DCPDLIAEFLQ 51 (55)
T ss_dssp CEEEEEEEEEE-TTEEEEEEEETTSCGGGCEEEEGGG--C-CCHHHHHHHHC
T ss_pred EEEEEEEEEEe-CCeEEEEEEEEeCCCccCCeeEHHH--C-CCHHHHHHHHH
Confidence 57899998875 4788999999999999999996443 2 46777877754
No 160
>3lwe_A M-phase phosphoprotein 8; MPP8, structural genomics, structural genomics consortium, S repeat, nucleus, cell cycle; 2.05A {Homo sapiens} SCOP: b.34.13.0 PDB: 3r93_A* 3svm_A* 3qo2_A*
Probab=97.25 E-value=6.9e-05 Score=66.06 Aligned_cols=52 Identities=21% Similarity=0.355 Sum_probs=40.6
Q ss_pred cchhhhhhhccCCCCcceeeeccCCCCCCcccccCCCchHHHhhHHHHHHHHHHH
Q 042857 662 KQPQRVISLRSSKDGTREAFVKWTGLPYDECTWEKLDEPALEKYSHLTDLFVQFE 716 (1404)
Q Consensus 662 ~~~eRii~~r~~~~~~~eylVKW~gL~Y~~~TWE~~~~~~~~~~~~li~~~~~~~ 716 (1404)
..+++|+++|.. .+..+|||||+|.+++++|||..+ .+...+.++..|.+..
T Consensus 5 y~VE~Il~~r~~-~g~~~YlVkWkGy~~~~~TWEp~~--nl~~~~~li~~f~~~~ 56 (62)
T 3lwe_A 5 FEVEKILDMKTE-GGKVLYKVRWKGYTSDDDTWEPEI--HLEDCKEVLLEFRKKI 56 (62)
T ss_dssp CCEEEEEEEEEE-TTEEEEEEEETTSCGGGCEEEEHH--HHTTCHHHHHHHHHHH
T ss_pred EEEEEEEEEEEc-CCeEEEEEEEeCCCCcCCCeeeHh--HhhccHHHHHHHHHhh
Confidence 468999998864 578899999999999999999532 3445677888887643
No 161
>3i91_A Chromobox protein homolog 8; chromobox homolog 8, CBX8, structural genomics structural genomics consortium, SGC, chromatin regulator, N phosphoprotein, repressor; HET: M3L; 1.55A {Homo sapiens} SCOP: b.34.13.2 PDB: 3gv6_A* 3i90_A*
Probab=97.24 E-value=3.5e-05 Score=66.04 Aligned_cols=49 Identities=24% Similarity=0.426 Sum_probs=37.6
Q ss_pred cchhhhhhhccCCCCcceeeeccCCCCCCcccccCCCchHHHhhHHHHHHHHH
Q 042857 662 KQPQRVISLRSSKDGTREAFVKWTGLPYDECTWEKLDEPALEKYSHLTDLFVQ 714 (1404)
Q Consensus 662 ~~~eRii~~r~~~~~~~eylVKW~gL~Y~~~TWE~~~~~~~~~~~~li~~~~~ 714 (1404)
..+++|+++|.. .|..+|||||+|.+++++|||.... +. .+.++..|..
T Consensus 4 y~VE~Il~~r~~-~g~~~YlVkWkGy~~~~~TWEp~~n--l~-~~~li~~f~~ 52 (54)
T 3i91_A 4 FAAEALLKRRIR-KGRMEYLVKWKGWSQKYSTWEPEEN--IL-DARLLAAFEE 52 (54)
T ss_dssp EEEEEEEEEEEE-TTEEEEEEEETTSCGGGCEEEEGGG--BC-CHHHHHHHHH
T ss_pred EEEEEEEEEEEe-CCcEEEEEEEeCCCcccCcccchhH--CC-CHHHHHHHHh
Confidence 467899998864 4778999999999999999996433 22 3667777754
No 162
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=97.23 E-value=4.6e-05 Score=64.75 Aligned_cols=41 Identities=22% Similarity=0.592 Sum_probs=31.7
Q ss_pred cccccCCC----ceEEcC-CCCCcccccccCCCCCCCC--CCCccCcccc
Q 042857 78 CVICDLGG----NLLCCD-SCPRTYHLQCLDPPLKRIP--NGKWQCPKCT 120 (1404)
Q Consensus 78 C~~C~~~g----~ll~Cd-~C~~~~H~~Cl~Ppl~~~P--~g~W~C~~C~ 120 (1404)
|.+|+++. .|+.|| .|..|||..|++ |+..+ .+.|+|+.|+
T Consensus 5 cc~C~~p~~~~~~mI~Cd~~C~~WfH~~Cvg--l~~~~~~~~~~~C~~C~ 52 (52)
T 2kgg_A 5 AQNCQRPCKDKVDWVQCDGGCDEWFHQVCVG--VSPEMAENEDYICINCA 52 (52)
T ss_dssp CTTCCCCCCTTCCEEECTTTTCCEEETTTTT--CCHHHHHHSCCCCSCC-
T ss_pred CCCCcCccCCCCcEEEeCCCCCccCcccccC--CCccccCCCCEECCCCC
Confidence 56677753 399999 899999999999 44332 3789999995
No 163
>1ap0_A Modifier protein 1; chromatin-binding, protein interaction motif, alpha+beta; NMR {Mus musculus} SCOP: b.34.13.2 PDB: 1guw_A*
Probab=97.21 E-value=6.6e-05 Score=68.36 Aligned_cols=49 Identities=29% Similarity=0.552 Sum_probs=39.2
Q ss_pred cchhhhhhhccCCCCcceeeeccCCCCCCcccccCCCchHHHhhHHHHHHHHH
Q 042857 662 KQPQRVISLRSSKDGTREAFVKWTGLPYDECTWEKLDEPALEKYSHLTDLFVQ 714 (1404)
Q Consensus 662 ~~~eRii~~r~~~~~~~eylVKW~gL~Y~~~TWE~~~~~~~~~~~~li~~~~~ 714 (1404)
..|++||++|.. .|..+|||||+|++++++|||..+. + ..+.+++.|..
T Consensus 14 y~VE~Il~~r~~-~g~~~YlVKWkGy~~~~~TWEp~~n--L-~~~~li~~f~~ 62 (73)
T 1ap0_A 14 YVVEKVLDRRVV-KGKVEYLLKWKGFSDEDNTWEPEEN--L-DCPDLIAEFLQ 62 (73)
T ss_dssp CEEEEEEEEEEC-SSSEEEEEEEESSSSCCCEEEETTT--C-CCHHHHHHHTT
T ss_pred EEEEEEEEEEEe-CCeEEEEEEECCCCCccCcEeeHHH--C-CCHHHHHHHHH
Confidence 389999999875 4778999999999999999997554 2 35677777654
No 164
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}
Probab=97.21 E-value=0.00014 Score=61.74 Aligned_cols=43 Identities=26% Similarity=0.702 Sum_probs=33.8
Q ss_pred ccccccCC---CceEEcCCCCCcccccccCCCCCCCCCCCccCccccc
Q 042857 77 ECVICDLG---GNLLCCDSCPRTYHLQCLDPPLKRIPNGKWQCPKCTQ 121 (1404)
Q Consensus 77 ~C~~C~~~---g~ll~Cd~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~ 121 (1404)
+| +|+.+ +.||.||.|..+||..|++.....+| +.|+|+.|..
T Consensus 6 ~C-~C~~~~~~~~MI~Cd~C~~W~H~~Cvgi~~~~~~-~~~~C~~C~~ 51 (52)
T 3o7a_A 6 TC-FCMKPFAGRPMIECNECHTWIHLSCAKIRKSNVP-EVFVCQKCRD 51 (52)
T ss_dssp CS-TTCCBCTTCCEEECTTTCCEEETTTTTCCGGGCC-SSCCCHHHHT
T ss_pred EE-EeCCcCCCCCEEEcCCCCccccccccCCCcccCC-CcEECcCCCC
Confidence 44 46663 46999999999999999996544445 7899999964
No 165
>2dnt_A Chromodomain protein, Y chromosome-like, isoform B; histone H3 tail, choromatin organization modifier, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.13.2
Probab=97.11 E-value=0.00013 Score=67.30 Aligned_cols=40 Identities=23% Similarity=0.566 Sum_probs=32.9
Q ss_pred eeEEEEEEecCccccccccCCHHHHHHHHHHHHHHHHHhhC
Q 042857 610 VSYEFLVKWVGKSNIHNSWIPESQLKVLAKRKLENYKAKYG 650 (1404)
Q Consensus 610 ~~~eylVKw~~~Sy~h~~Wv~e~~l~~~~~~~l~~~~~k~~ 650 (1404)
+..+|||||+|+++-+|+|.+++.|.. .+.++..|.++..
T Consensus 28 g~~~YlVKWkGy~~~~~TWEp~~~l~~-~~~li~~f~~~~~ 67 (78)
T 2dnt_A 28 GKTEYLVRWKGYDSEDDTWEPEQHLVN-CEEYIHDFNRRHT 67 (78)
T ss_dssp SCEEEEECBTTBCGGGCEEEETTTCTT-CHHHHHHHHHHHS
T ss_pred CcEEEEEEECCCCccCCceecHHHHHh-HHHHHHHHHhhhh
Confidence 358999999999999999999998753 4667788876653
No 166
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=97.11 E-value=7e-05 Score=91.13 Aligned_cols=48 Identities=21% Similarity=0.584 Sum_probs=36.4
Q ss_pred ccccccccccCC----CceEEcCCCCCcccccccCCCCCCCCC---CCccCccccccc
Q 042857 73 GYYYECVICDLG----GNLLCCDSCPRTYHLQCLDPPLKRIPN---GKWQCPKCTQKN 123 (1404)
Q Consensus 73 ~~~~~C~~C~~~----g~ll~Cd~C~~~~H~~Cl~Ppl~~~P~---g~W~C~~C~~~~ 123 (1404)
....+| +|+.+ |.|+.||.|..|||..|++ +...+. +.|+|+.|..+.
T Consensus 35 ~~~~yC-~C~~~~d~~~~MIqCd~C~~WfH~~Cvg--l~~~~~~~~~~~~C~~C~~~~ 89 (488)
T 3kv5_D 35 PPPVYC-VCRQPYDVNRFMIECDICKDWFHGSCVG--VEEHHAVDIDLYHCPNCAVLH 89 (488)
T ss_dssp CCCEET-TTTEECCTTSCEEEBTTTCCEEEHHHHT--CCGGGGGGEEEBCCHHHHHHH
T ss_pred CCCeEE-eCCCcCCCCCCeEEccCCCCceeeeecC--cCcccccCCCEEECCCCcCCc
Confidence 344456 67764 4599999999999999999 444432 679999998753
No 167
>2k1b_A Chromobox protein homolog 7; alpha/beta protein, chromatin regulator, nucleus, repressor, transcription, transcription regulation; NMR {Homo sapiens} PDB: 2l12_A* 2l1b_A*
Probab=97.11 E-value=8.4e-05 Score=67.56 Aligned_cols=48 Identities=25% Similarity=0.400 Sum_probs=37.3
Q ss_pred cchhhhhhhccCCCCcceeeeccCCCCCCcccccCCCchHHHhhHHHHHHHH
Q 042857 662 KQPQRVISLRSSKDGTREAFVKWTGLPYDECTWEKLDEPALEKYSHLTDLFV 713 (1404)
Q Consensus 662 ~~~eRii~~r~~~~~~~eylVKW~gL~Y~~~TWE~~~~~~~~~~~~li~~~~ 713 (1404)
..|++|++.|.. .+..+|||||+|.+.+++|||..+. +. .+.+|+.|.
T Consensus 22 yeVEkIld~r~~-~g~~~YlVKWkGy~~~~~TWEp~en--L~-~~~li~~F~ 69 (73)
T 2k1b_A 22 FAVESIRKKRVR-KGKVEYLVKWKGWPPKYSTWEPEEH--IL-DPRLVMAYE 69 (73)
T ss_dssp CCCSEEEEEEEE-TTEEEEEEECTTCCGGGCCEEETTS--CS-CHHHHHHHH
T ss_pred EEEEEEEEEEEc-CCcEEEEEEECCCCcccCeecchHH--CC-CHHHHHHHH
Confidence 489999998864 4778999999999999999996543 22 256676664
No 168
>3fdt_A Chromobox protein homolog 5; chromobox homolog5, CBX5, structural GENO structural genomics consortium, SGC, centromere, nucleus, phosphoprotein; HET: M3L; 2.00A {Homo sapiens}
Probab=97.10 E-value=7.2e-05 Score=65.25 Aligned_cols=49 Identities=27% Similarity=0.517 Sum_probs=38.8
Q ss_pred cchhhhhhhccCCCCcceeeeccCCCCCCcccccCCCchHHHhhHHHHHHHHH
Q 042857 662 KQPQRVISLRSSKDGTREAFVKWTGLPYDECTWEKLDEPALEKYSHLTDLFVQ 714 (1404)
Q Consensus 662 ~~~eRii~~r~~~~~~~eylVKW~gL~Y~~~TWE~~~~~~~~~~~~li~~~~~ 714 (1404)
..+++||++|.. .|..+|||||+|.+++++|||..+. + ..+.++..|..
T Consensus 4 y~VE~Il~~r~~-~g~~~YlVkWkGy~~~~~TWEp~~n--l-~~~~li~~f~~ 52 (59)
T 3fdt_A 4 YVVEKVLDRRVV-KGQVEYLLKWKGFSEEHNTWEPEKN--L-DCPELISEFMK 52 (59)
T ss_dssp EEEEEEEEEEEE-TTEEEEEEEETTSCGGGCEEEEGGG--E-ECHHHHHHHHC
T ss_pred EEEEEEEEEEEe-CCeEEEEEEEeCCCcccCCccchhH--C-CCHHHHHHHHH
Confidence 367899998865 5788999999999999999996433 3 46777877764
No 169
>3h91_A Chromobox protein homolog 2; human chromobox homolog 2, CBX2, structural genomics, structural genomics consortium, SGC, chromatin regulator, D binding, nucleus; HET: M3L; 1.50A {Homo sapiens} SCOP: b.34.13.2 PDB: 2k28_A 3i8z_A
Probab=97.10 E-value=7.1e-05 Score=64.12 Aligned_cols=49 Identities=24% Similarity=0.405 Sum_probs=37.5
Q ss_pred cchhhhhhhccCCCCcceeeeccCCCCCCcccccCCCchHHHhhHHHHHHHHH
Q 042857 662 KQPQRVISLRSSKDGTREAFVKWTGLPYDECTWEKLDEPALEKYSHLTDLFVQ 714 (1404)
Q Consensus 662 ~~~eRii~~r~~~~~~~eylVKW~gL~Y~~~TWE~~~~~~~~~~~~li~~~~~ 714 (1404)
..+++|+++|.. .|..+|||||+|.+++++|||..+. +. .+.++..|.+
T Consensus 4 y~VE~Il~~r~~-~g~~~YlVkWkGy~~~~~TWEp~~n--l~-~~~li~~f~~ 52 (54)
T 3h91_A 4 FAAECILSKRLR-KGKLEYLVKWRGWSSKHNSWEPEEN--IL-DPRLLLAFQK 52 (54)
T ss_dssp EEEEEEEEEEEE-TTEEEEEEEETTSCGGGCEEEEGGG--BC-SHHHHHHHHC
T ss_pred eEEEEEEEEEEe-CCcEEEEEEEeCCCCcCCCeecHhH--CC-CHHHHHHHHh
Confidence 467899998864 5788999999999999999996433 22 3567777754
No 170
>2kvm_A Chromobox protein homolog 7; histone modification, lysine methylation, chromobox, polycom chromatin-binding; HET: MLY; NMR {Mus musculus}
Probab=97.09 E-value=0.00012 Score=66.82 Aligned_cols=52 Identities=25% Similarity=0.385 Sum_probs=40.5
Q ss_pred cchhhhhhhccCCCCcceeeeccCCCCCCcccccCCCchHHHhhHHHHHHHHHHHH
Q 042857 662 KQPQRVISLRSSKDGTREAFVKWTGLPYDECTWEKLDEPALEKYSHLTDLFVQFER 717 (1404)
Q Consensus 662 ~~~eRii~~r~~~~~~~eylVKW~gL~Y~~~TWE~~~~~~~~~~~~li~~~~~~~~ 717 (1404)
..|++|+++|.. .+..+|||||+|++++++|||..+. +. .+.+++.|.....
T Consensus 14 y~VE~Il~~r~~-~g~~~YlVKWkGy~~~~~TWEp~~~--L~-~~~li~~f~~~~~ 65 (74)
T 2kvm_A 14 FAVESIRKKRVR-KGKVEYLVKWKGWPPKYSTWEPEEH--IL-DPRLVMAYEEKEE 65 (74)
T ss_dssp CCEEEEEEEEEE-TTEEEEEEEETTSCGGGCEEEETTT--CS-CHHHHHHHHHHHH
T ss_pred EEEEEEEEEEEe-CCcEEEEEEEcCCCCccCeEeeHHH--CC-CHHHHHHHHHHhh
Confidence 489999998864 4778999999999999999997543 22 3567888876543
No 171
>2epb_A Chromodomain-helicase-DNA-binding protein 6; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.03 E-value=0.00018 Score=64.49 Aligned_cols=35 Identities=20% Similarity=0.490 Sum_probs=29.6
Q ss_pred eEEEEEEecCccccccccCCHHHHHHHHHHHHHHHHHh
Q 042857 611 SYEFLVKWVGKSNIHNSWIPESQLKVLAKRKLENYKAK 648 (1404)
Q Consensus 611 ~~eylVKw~~~Sy~h~~Wv~e~~l~~~~~~~l~~~~~k 648 (1404)
..+|||||+|++|-+|+|.+++.| .+.++..|.++
T Consensus 32 ~~eYLVKWkgl~y~e~TWE~~~~l---~~~~I~~f~~r 66 (68)
T 2epb_A 32 VTHYLVKWCSLPYEESTWELEEDV---DPAKVKEFESL 66 (68)
T ss_dssp EEEEEEECTTSCGGGCCEEETTTS---CHHHHHHHHHH
T ss_pred ceEEEEEEcCCChhcCccccchhc---CHHHHHHHHHh
Confidence 689999999999999999999887 34677777654
No 172
>1pfb_A Polycomb protein; chromatin, histone methylation, polycomb, chromodomain, peptide binding protein; HET: M3L; 1.40A {Drosophila melanogaster} SCOP: b.34.13.2
Probab=97.03 E-value=6.3e-05 Score=64.67 Aligned_cols=48 Identities=27% Similarity=0.423 Sum_probs=36.6
Q ss_pred cchhhhhhhccCCCCcceeeeccCCCCCCcccccCCCchHHHhhHHHHHHHH
Q 042857 662 KQPQRVISLRSSKDGTREAFVKWTGLPYDECTWEKLDEPALEKYSHLTDLFV 713 (1404)
Q Consensus 662 ~~~eRii~~r~~~~~~~eylVKW~gL~Y~~~TWE~~~~~~~~~~~~li~~~~ 713 (1404)
..|++|+++|.. .|..+|||||+|.+++++|||..+. +. .+.+++.|.
T Consensus 4 y~VE~Il~~r~~-~g~~~YlVKWkgy~~~~~TWEp~~~--l~-~~~li~~f~ 51 (55)
T 1pfb_A 4 YAAEKIIQKRVK-KGVVEYRVKWKGWNQRYNTWEPEVN--IL-DRRLIDIYE 51 (55)
T ss_dssp EEEEEEEEEEEE-TTEEEEEEEETTSCGGGCEEEEGGG--CC-STHHHHHHH
T ss_pred EEEEEEEEEEEe-CCeEEEEEEEcCCCCccCcEeEHHH--CC-CHHHHHHHH
Confidence 368999998874 4778999999999999999996433 22 255676664
No 173
>2rso_A Chromatin-associated protein SWI6; chromodomain, silencing, chromosomal protein, Met transcription; NMR {Schizosaccharomyces pombe}
Probab=97.01 E-value=0.00027 Score=67.19 Aligned_cols=52 Identities=19% Similarity=0.387 Sum_probs=39.7
Q ss_pred cchhhhhhhccCC-CCcceeeeccCCCC-CCcccccCCCchHHHhhHHHHHHHHHH
Q 042857 662 KQPQRVISLRSSK-DGTREAFVKWTGLP-YDECTWEKLDEPALEKYSHLTDLFVQF 715 (1404)
Q Consensus 662 ~~~eRii~~r~~~-~~~~eylVKW~gL~-Y~~~TWE~~~~~~~~~~~~li~~~~~~ 715 (1404)
..|++||++|... .|..+|||||+|.+ .+++|||.... +...+.+|+.|.+.
T Consensus 31 y~VE~Il~~r~~~~~g~~~YlVkWkGy~~~~~~TWEP~~n--l~~c~~li~~f~~~ 84 (92)
T 2rso_A 31 YVVEKVLKHRMARKGGGYEYLLKWEGYDDPSDNTWSSEAD--CSGCKQLIEAYWNE 84 (92)
T ss_dssp CCEEEEEEEEECTTSSCEEEEEEETTCCCCTTSEEECGGG--GGTSHHHHHHHHHH
T ss_pred EEEEEEEEEEeecCCCEEEEEEEEccCCCcccCccccHHH--HhhHHHHHHHHHHH
Confidence 4789999999754 57789999999987 57899996432 44457788887653
No 174
>1pdq_A Polycomb protein; methyllysine, chromodomain, polycomb, lysine methylation, trimethyllysine, cation-PI, chromo, structural protein; HET: M3L; 1.76A {Drosophila melanogaster} SCOP: b.34.13.2
Probab=96.74 E-value=0.0002 Score=64.83 Aligned_cols=51 Identities=27% Similarity=0.384 Sum_probs=37.9
Q ss_pred hccchhhhhhhccCCCCcceeeeccCCCCCCcccccCCCchHHHhhHHHHHHHHH
Q 042857 660 RWKQPQRVISLRSSKDGTREAFVKWTGLPYDECTWEKLDEPALEKYSHLTDLFVQ 714 (1404)
Q Consensus 660 e~~~~eRii~~r~~~~~~~eylVKW~gL~Y~~~TWE~~~~~~~~~~~~li~~~~~ 714 (1404)
+...|++|++.|.. .+..+|||||+|.+++++|||..+. +. .+.+|+.|.+
T Consensus 19 ~eyeVEkIld~r~~-~g~~~YlVKWkGy~~~~nTWEP~en--L~-~~~lI~~F~~ 69 (72)
T 1pdq_A 19 LVYAAEKIIQKRVK-KGVVEYRVKWKGWNQRYNTWEPEVN--IL-DRRLIDIYEQ 69 (72)
T ss_dssp EEEEEEEEEEEEEE-TTEEEEEEEETTSCGGGCEEEEGGG--CC-STHHHHHHC-
T ss_pred ceEEEEEEEEEEEe-CCcEEEEEEECCCCCccCeecchHH--CC-CHHHHHHHHH
Confidence 34589999998863 4778999999999999999996432 22 3566766643
No 175
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=96.72 E-value=0.011 Score=71.38 Aligned_cols=143 Identities=17% Similarity=0.144 Sum_probs=85.4
Q ss_pred CCCCHHHHHHHHHHHHhhccCC-cEEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEeCCCChHHHHHHHHHHCCCCc
Q 042857 754 GALFPHQLEALNWLRKCWHKSK-NVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLSTMPNWLAEFALWAPNLN 832 (1404)
Q Consensus 754 ~~L~pyQlegVnwL~~~~~~~~-~~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP~Sll~nW~rEf~kw~P~l~ 832 (1404)
..|-+.|.+++..+......+. ..+|....|+|||..+.+++.++...+. ..+++++|+.....-.++. . .+.
T Consensus 24 ~~Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~ll~~~~~~l~~~~~--~~il~~a~T~~Aa~~l~~~---~-~~~ 97 (459)
T 3upu_A 24 DDLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTLTKFIIEALISTGE--TGIILAAPTHAAKKILSKL---S-GKE 97 (459)
T ss_dssp SCCCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHHHHHHHHHHHHTTC--CCEEEEESSHHHHHHHHHH---H-SSC
T ss_pred ccCCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCC--ceEEEecCcHHHHHHHHhh---h-ccc
Confidence 3699999999998877655544 7889999999999998888888875433 4689999987654322221 1 222
Q ss_pred EEEEecchhHHHHHHHhhhccCCCCccccccCCCCceEEEeeHHHHHhhhccccCCCceEEEEccccccCCCccHHHHHH
Q 042857 833 VVEYHGCAKARAIIRQYEWHASDPDNLNKKTSSYKFNVLLTTYEMILADSSHLRGVPWEVLVVDEGHRLKNSGSKLFSLL 912 (1404)
Q Consensus 833 Vvvy~G~~~~R~~ir~~E~~~~~~~~~~~~~~~~kfdVvITTYe~l~~d~~~L~~i~w~lVIVDEAHrlKN~~Sk~~~~L 912 (1404)
+..+|. .+ .+... . ......+... . .-....+++|||||+|.+- ...+...+
T Consensus 98 ~~T~h~------~~---~~~~~--------~-~~~~~~~~~~------~--~~~~~~~~~iiiDE~~~~~--~~~~~~l~ 149 (459)
T 3upu_A 98 ASTIHS------IL---KINPV--------T-YEENVLFEQK------E--VPDLAKCRVLICDEVSMYD--RKLFKILL 149 (459)
T ss_dssp EEEHHH------HH---TEEEE--------E-CSSCEEEEEC------S--CCCCSSCSEEEESCGGGCC--HHHHHHHH
T ss_pred hhhHHH------Hh---ccCcc--------c-ccccchhccc------c--cccccCCCEEEEECchhCC--HHHHHHHH
Confidence 222221 00 00000 0 0000011100 0 1112357899999999873 22334444
Q ss_pred hhcccccEEEEeccCCCC
Q 042857 913 NSFSFQHRVLLTGTPLQN 930 (1404)
Q Consensus 913 ~~l~~~~rLLLTGTPlqN 930 (1404)
..+....++++.|-|-|.
T Consensus 150 ~~~~~~~~~~~vGD~~Ql 167 (459)
T 3upu_A 150 STIPPWCTIIGIGDNKQI 167 (459)
T ss_dssp HHSCTTCEEEEEECTTSC
T ss_pred HhccCCCEEEEECCHHHc
Confidence 445567789999998773
No 176
>3g7l_A Chromo domain-containing protein 1; chromodomain, protein-peptide complex, silencing, cell cycle, chromosome partition, DNA-binding, nucleus; HET: M3L; 2.20A {Schizosaccharomyces pombe}
Probab=96.66 E-value=0.00044 Score=60.72 Aligned_cols=50 Identities=20% Similarity=0.293 Sum_probs=36.3
Q ss_pred ccchhhhhhhccCCCCcc-eeeeccCCCCCCcccccCCCchHHHhhHHHHHHHHH
Q 042857 661 WKQPQRVISLRSSKDGTR-EAFVKWTGLPYDECTWEKLDEPALEKYSHLTDLFVQ 714 (1404)
Q Consensus 661 ~~~~eRii~~r~~~~~~~-eylVKW~gL~Y~~~TWE~~~~~~~~~~~~li~~~~~ 714 (1404)
-..+++|+++|... +.. +|||||+|.+.+++|||.... +. .+.++..|..
T Consensus 7 ey~VE~Il~~r~~~-g~~~~YlVkWkGy~~~~~TWEp~~n--l~-~~~li~~~~~ 57 (61)
T 3g7l_A 7 VYEVEDILADRVNK-NGINEYYIKWAGYDWYDNTWEPEQN--LF-GAEKVLKKWK 57 (61)
T ss_dssp EEEEEEEEEEEECT-TSCEEEEEEETTSCGGGCEEEEGGG--GT-BCHHHHHHHH
T ss_pred EEEEEEEEEEEEEC-CCEEEEEEEEeCCCCcCCceeeHhH--CC-CHHHHHHHHH
Confidence 35789999998765 445 999999999999999996433 22 3445555543
No 177
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=96.65 E-value=0.021 Score=72.17 Aligned_cols=68 Identities=24% Similarity=0.251 Sum_probs=53.1
Q ss_pred CCCCHHHHHHHHHHHHhhccCCcEEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEeCCCC-hHHHHHHHHHH
Q 042857 754 GALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLST-MPNWLAEFALW 827 (1404)
Q Consensus 754 ~~L~pyQlegVnwL~~~~~~~~~~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP~Sl-l~nW~rEf~kw 827 (1404)
..|-+.|.+||..++. ...-.|+....|+|||.+.+.+|.++... ..++||++|+.. +.+....+...
T Consensus 188 ~~LN~~Q~~AV~~al~---~~~~~lI~GPPGTGKT~ti~~~I~~l~~~---~~~ILv~a~TN~AvD~i~erL~~~ 256 (646)
T 4b3f_X 188 TCLDTSQKEAVLFALS---QKELAIIHGPPGTGKTTTVVEIILQAVKQ---GLKVLCCAPSNIAVDNLVERLALC 256 (646)
T ss_dssp TTCCHHHHHHHHHHHH---CSSEEEEECCTTSCHHHHHHHHHHHHHHT---TCCEEEEESSHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHhc---CCCceEEECCCCCCHHHHHHHHHHHHHhC---CCeEEEEcCchHHHHHHHHHHHhc
Confidence 4699999999988765 23457899999999999999999888754 347999999865 46666666554
No 178
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=96.64 E-value=0.0093 Score=74.38 Aligned_cols=132 Identities=25% Similarity=0.300 Sum_probs=85.6
Q ss_pred CCCCCHHHHHHHHHHHHhhccCCcEEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEeCCCChHHHHHHHHHHCCCCc
Q 042857 753 GGALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLSTMPNWLAEFALWAPNLN 832 (1404)
Q Consensus 753 g~~L~pyQlegVnwL~~~~~~~~~~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP~Sll~nW~rEf~kw~P~l~ 832 (1404)
+..|-+.|.+++..+.. +...+|....|+|||.++.+++..+... ..++++++|+........+.. ...
T Consensus 187 ~~~L~~~Q~~Av~~~~~----~~~~~I~G~pGTGKTt~i~~l~~~l~~~---g~~Vl~~ApT~~Aa~~L~e~~----~~~ 255 (574)
T 3e1s_A 187 RKGLSEEQASVLDQLAG----HRLVVLTGGPGTGKSTTTKAVADLAESL---GLEVGLCAPTGKAARRLGEVT----GRT 255 (574)
T ss_dssp TTTCCHHHHHHHHHHTT----CSEEEEECCTTSCHHHHHHHHHHHHHHT---TCCEEEEESSHHHHHHHHHHH----TSC
T ss_pred cCCCCHHHHHHHHHHHh----CCEEEEEcCCCCCHHHHHHHHHHHHHhc---CCeEEEecCcHHHHHHhHhhh----ccc
Confidence 55799999999988753 6788999999999999888777666532 357999999887766555422 111
Q ss_pred EEEEecchhHHHHHHHhhhccCCCCccccccCCCCceEEEeeHHHHHhhhccccCCCceEEEEccccccCCCccHHHHHH
Q 042857 833 VVEYHGCAKARAIIRQYEWHASDPDNLNKKTSSYKFNVLLTTYEMILADSSHLRGVPWEVLVVDEGHRLKNSGSKLFSLL 912 (1404)
Q Consensus 833 Vvvy~G~~~~R~~ir~~E~~~~~~~~~~~~~~~~kfdVvITTYe~l~~d~~~L~~i~w~lVIVDEAHrlKN~~Sk~~~~L 912 (1404)
...++ +...+.. . .| . ...-...++++|||||+|.+- ...+...+
T Consensus 256 a~Tih---------~ll~~~~---~---------~~----------~--~~~~~~~~~dvlIIDEasml~--~~~~~~Ll 300 (574)
T 3e1s_A 256 ASTVH---------RLLGYGP---Q---------GF----------R--HNHLEPAPYDLLIVDEVSMMG--DALMLSLL 300 (574)
T ss_dssp EEEHH---------HHTTEET---T---------EE----------S--CSSSSCCSCSEEEECCGGGCC--HHHHHHHH
T ss_pred HHHHH---------HHHcCCc---c---------hh----------h--hhhcccccCCEEEEcCccCCC--HHHHHHHH
Confidence 11111 0111000 0 00 0 001123468999999999984 23455566
Q ss_pred hhcccccEEEEeccCCCC
Q 042857 913 NSFSFQHRVLLTGTPLQN 930 (1404)
Q Consensus 913 ~~l~~~~rLLLTGTPlqN 930 (1404)
..+....+++|.|-|-|.
T Consensus 301 ~~~~~~~~lilvGD~~QL 318 (574)
T 3e1s_A 301 AAVPPGARVLLVGDTDQL 318 (574)
T ss_dssp TTSCTTCEEEEEECTTSC
T ss_pred HhCcCCCEEEEEeccccc
Confidence 667777899999999874
No 179
>2d9u_A Chromobox protein homolog 2 (isoform 2); chromobox homolog 2, chromo domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.56 E-value=0.00048 Score=62.82 Aligned_cols=37 Identities=43% Similarity=0.709 Sum_probs=31.7
Q ss_pred eEEEEEEecCccccccccCCHHHHHHHHHHHHHHHHHhh
Q 042857 611 SYEFLVKWVGKSNIHNSWIPESQLKVLAKRKLENYKAKY 649 (1404)
Q Consensus 611 ~~eylVKw~~~Sy~h~~Wv~e~~l~~~~~~~l~~~~~k~ 649 (1404)
..+|||||+|+++-||+|.|++.|.. ..+|..|.++.
T Consensus 25 ~~~YlVKWkGy~~~~~TWEp~~nl~~--~~li~~f~~~~ 61 (74)
T 2d9u_A 25 KLEYLVKWRGWSSKHNSWEPEENILD--PRLLLAFQKKE 61 (74)
T ss_dssp EEEEEEEETTSCTTTCEEEEGGGCCC--HHHHHHHHHHH
T ss_pred cEEEEEEECCCCCccCccccHHHCCC--HHHHHHHHHhh
Confidence 58999999999999999999998865 46788887654
No 180
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=96.53 E-value=0.017 Score=72.81 Aligned_cols=161 Identities=17% Similarity=0.209 Sum_probs=93.5
Q ss_pred CCCHHHHHHHHHHHHhhccCCcEEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEeCCCCh-HHHHHHHHHHCCCCcE
Q 042857 755 ALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLSTM-PNWLAEFALWAPNLNV 833 (1404)
Q Consensus 755 ~L~pyQlegVnwL~~~~~~~~~~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP~Sll-~nW~rEf~kw~P~l~V 833 (1404)
.|-+.|.+++..++. ....++....|+|||.++..++..+... ...++||++|.... .+-...+... .+++
T Consensus 180 ~ln~~Q~~av~~~l~----~~~~li~GppGTGKT~~~~~~i~~l~~~--~~~~ilv~a~tn~A~~~l~~~l~~~--~~~~ 251 (624)
T 2gk6_A 180 DLNHSQVYAVKTVLQ----RPLSLIQGPPGTGKTVTSATIVYHLARQ--GNGPVLVCAPSNIAVDQLTEKIHQT--GLKV 251 (624)
T ss_dssp CCCHHHHHHHHHHHT----CSEEEEECCTTSCHHHHHHHHHHHHHTS--SSCCEEEEESSHHHHHHHHHHHHTT--TCCE
T ss_pred CCCHHHHHHHHHHhc----CCCeEEECCCCCCHHHHHHHHHHHHHHc--CCCeEEEEeCcHHHHHHHHHHHHhc--CCeE
Confidence 589999999987653 4567889999999999998888877642 34579999998755 4554545443 3343
Q ss_pred EEEecchh-----------HHHHHH---------Hh-hhccCCCCccc--------------cccCCCCceEEEeeHHHH
Q 042857 834 VEYHGCAK-----------ARAIIR---------QY-EWHASDPDNLN--------------KKTSSYKFNVLLTTYEMI 878 (1404)
Q Consensus 834 vvy~G~~~-----------~R~~ir---------~~-E~~~~~~~~~~--------------~~~~~~kfdVvITTYe~l 878 (1404)
+-+.+... ....++ .+ .+. .....+. ........+||++|...+
T Consensus 252 ~R~~~~~r~~~~~~~~~~tl~~~~~~~~~~~~l~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~vI~~T~~~~ 330 (624)
T 2gk6_A 252 VRLCAKSREAIDSPVSFLALHNQIRNMDSMPELQKLQQLK-DETGELSSADEKRYRALKRTAERELLMNADVICCTCVGA 330 (624)
T ss_dssp EECCCTGGGSCCCTTTTTBHHHHHTSCSSCHHHHHHHTTC-C----CCHHHHHHHHHHHHHHHHHHHHTCSEEEEETGGG
T ss_pred EeeccccchhhccchhhhhHHHHHHhccchHHHHHHHHHH-HhhcccCHHHHHHHHHHHHHHHHHHHhcCCEEEEcChhh
Confidence 33222110 000000 00 000 0000000 000012457888887654
Q ss_pred HhhhccccCCCceEEEEccccccCCCccHHHHHHhhcccccEEEEeccCCCC
Q 042857 879 LADSSHLRGVPWEVLVVDEGHRLKNSGSKLFSLLNSFSFQHRVLLTGTPLQN 930 (1404)
Q Consensus 879 ~~d~~~L~~i~w~lVIVDEAHrlKN~~Sk~~~~L~~l~~~~rLLLTGTPlqN 930 (1404)
.. ..+....|++||||||....... .++.-+....+++|.|=|.|-
T Consensus 331 ~~--~~l~~~~fd~viIDEAsQ~~e~~----~li~l~~~~~~~ilvGD~~QL 376 (624)
T 2gk6_A 331 GD--PRLAKMQFRSILIDESTQATEPE----CMVPVVLGAKQLILVGDHCQL 376 (624)
T ss_dssp GC--GGGTTCCCSEEEETTGGGSCHHH----HHHHHTTTBSEEEEEECTTSC
T ss_pred cc--hhhhcCCCCEEEEecccccCcHH----HHHHHHhcCCeEEEecChhcc
Confidence 32 33566789999999997664322 122222335689999999774
No 181
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=96.46 E-value=0.00077 Score=71.82 Aligned_cols=49 Identities=24% Similarity=0.684 Sum_probs=35.6
Q ss_pred ccccccCC---Cc----eEEcCCCCCcccccccCCCC------CCCCC-CCccCccccccccc
Q 042857 77 ECVICDLG---GN----LLCCDSCPRTYHLQCLDPPL------KRIPN-GKWQCPKCTQKNDQ 125 (1404)
Q Consensus 77 ~C~~C~~~---g~----ll~Cd~C~~~~H~~Cl~Ppl------~~~P~-g~W~C~~C~~~~~~ 125 (1404)
+|.+|+.+ ++ |+.||.|.+|||..|++..- ..+|. ..|+||.|..+...
T Consensus 4 ~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~~~~ 66 (183)
T 3lqh_A 4 FCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERHPA 66 (183)
T ss_dssp BCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCSSSC
T ss_pred cCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCCCCH
Confidence 47777653 33 99999999999999998421 11232 47999999987543
No 182
>3lwe_A M-phase phosphoprotein 8; MPP8, structural genomics, structural genomics consortium, S repeat, nucleus, cell cycle; 2.05A {Homo sapiens} SCOP: b.34.13.0 PDB: 3r93_A* 3svm_A* 3qo2_A*
Probab=96.41 E-value=0.0013 Score=57.86 Aligned_cols=39 Identities=26% Similarity=0.509 Sum_probs=33.0
Q ss_pred eeEEEEEEecCccccccccCCHHHHHHHHHHHHHHHHHhh
Q 042857 610 VSYEFLVKWVGKSNIHNSWIPESQLKVLAKRKLENYKAKY 649 (1404)
Q Consensus 610 ~~~eylVKw~~~Sy~h~~Wv~e~~l~~~~~~~l~~~~~k~ 649 (1404)
+..+|||||+|.++-+++|.|++.|. .++..+..|.++.
T Consensus 18 g~~~YlVkWkGy~~~~~TWEp~~nl~-~~~~li~~f~~~~ 56 (62)
T 3lwe_A 18 GKVLYKVRWKGYTSDDDTWEPEIHLE-DCKEVLLEFRKKI 56 (62)
T ss_dssp TEEEEEEEETTSCGGGCEEEEHHHHT-TCHHHHHHHHHHH
T ss_pred CeEEEEEEEeCCCCcCCCeeeHhHhh-ccHHHHHHHHHhh
Confidence 35899999999999999999999984 4677888887664
No 183
>3h91_A Chromobox protein homolog 2; human chromobox homolog 2, CBX2, structural genomics, structural genomics consortium, SGC, chromatin regulator, D binding, nucleus; HET: M3L; 1.50A {Homo sapiens} SCOP: b.34.13.2 PDB: 2k28_A 3i8z_A
Probab=96.37 E-value=0.00063 Score=58.21 Aligned_cols=37 Identities=43% Similarity=0.704 Sum_probs=30.2
Q ss_pred eeEEEEEEecCccccccccCCHHHHHHHHHHHHHHHHHh
Q 042857 610 VSYEFLVKWVGKSNIHNSWIPESQLKVLAKRKLENYKAK 648 (1404)
Q Consensus 610 ~~~eylVKw~~~Sy~h~~Wv~e~~l~~~~~~~l~~~~~k 648 (1404)
+..+|||||+|.++-+++|.|++.|.. +.++..|.+|
T Consensus 17 g~~~YlVkWkGy~~~~~TWEp~~nl~~--~~li~~f~~r 53 (54)
T 3h91_A 17 GKLEYLVKWRGWSSKHNSWEPEENILD--PRLLLAFQKK 53 (54)
T ss_dssp TEEEEEEEETTSCGGGCEEEEGGGBCS--HHHHHHHHC-
T ss_pred CcEEEEEEEeCCCCcCCCeecHhHCCC--HHHHHHHHhc
Confidence 358999999999999999999998863 5677777643
No 184
>3mts_A Histone-lysine N-methyltransferase SUV39H1; histone methyltransferase, histone-lysine N-methyltransferas SUV39H1, histone H3, TRI-methylation; 2.20A {Homo sapiens}
Probab=96.36 E-value=0.00078 Score=59.72 Aligned_cols=38 Identities=29% Similarity=0.611 Sum_probs=32.0
Q ss_pred eeEEEEEEecCccccccccCCHHHHHHHHHHHHHHHHHhh
Q 042857 610 VSYEFLVKWVGKSNIHNSWIPESQLKVLAKRKLENYKAKY 649 (1404)
Q Consensus 610 ~~~eylVKw~~~Sy~h~~Wv~e~~l~~~~~~~l~~~~~k~ 649 (1404)
+..+|||||+|+++-+++|.|++.|. .+..+..|..++
T Consensus 14 g~~~YlVKWkGy~~~~~TWEp~~nl~--c~~li~~f~~~~ 51 (64)
T 3mts_A 14 EQEYYLVKWRGYPDSESTWEPRQNLK--CVRILKQFHKDL 51 (64)
T ss_dssp SCEEEEEEETTSCGGGCEEEEGGGCC--CHHHHHHHHHHH
T ss_pred CeEEEEEEEecCCCcCCcEeEHHHCC--CHHHHHHHHHHH
Confidence 35899999999999999999999984 677777776654
No 185
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=96.34 E-value=0.022 Score=73.68 Aligned_cols=161 Identities=17% Similarity=0.206 Sum_probs=93.9
Q ss_pred CCCHHHHHHHHHHHHhhccCCcEEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEeCCCCh-HHHHHHHHHHCCCCcE
Q 042857 755 ALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLSTM-PNWLAEFALWAPNLNV 833 (1404)
Q Consensus 755 ~L~pyQlegVnwL~~~~~~~~~~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP~Sll-~nW~rEf~kw~P~l~V 833 (1404)
.|-+.|.+++..++. +.-.++....|+|||.++..++..+... ...++||++|.... .+-...+... .+++
T Consensus 356 ~Ln~~Q~~Av~~~l~----~~~~lI~GppGTGKT~ti~~~i~~l~~~--~~~~ilv~a~tn~A~~~l~~~l~~~--g~~v 427 (800)
T 2wjy_A 356 DLNHSQVYAVKTVLQ----RPLSLIQGPPGTGKTVTSATIVYHLARQ--GNGPVLVCAPSNIAVDQLTEKIHQT--GLKV 427 (800)
T ss_dssp CCCHHHHHHHHHHHT----SSEEEEECCTTSCHHHHHHHHHHHHHTT--CSSCEEEEESSHHHHHHHHHHHHTT--TCCE
T ss_pred CCCHHHHHHHHHhcc----CCeEEEEcCCCCCHHHHHHHHHHHHHHc--CCCcEEEEcCcHHHHHHHHHHHHHh--Ccce
Confidence 589999999987654 4567899999999999988888877643 34579999998765 4444444432 3344
Q ss_pred EEEecchhH-----------HHHHHHh----------hhccCCCCcccc--------------ccCCCCceEEEeeHHHH
Q 042857 834 VEYHGCAKA-----------RAIIRQY----------EWHASDPDNLNK--------------KTSSYKFNVLLTTYEMI 878 (1404)
Q Consensus 834 vvy~G~~~~-----------R~~ir~~----------E~~~~~~~~~~~--------------~~~~~kfdVvITTYe~l 878 (1404)
+-+.+.... ...++.+ ++.. ....+.. .......+||++|...+
T Consensus 428 vRlg~~~r~~i~~~~~~~tlh~~~~~~~~~~~l~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~a~VI~~T~~~~ 506 (800)
T 2wjy_A 428 VRLCAKSREAIDSPVSFLALHNQIRNMDSMPELQKLQQLKD-ETGELSSADEKRYRALKRTAERELLMNADVICCTCVGA 506 (800)
T ss_dssp EECCCGGGGGCCCTTGGGBHHHHHHTCTTCHHHHHHHHHHT-TTSCCCHHHHHHHHHHHHHHHHHHHHHCSEEEEETGGG
T ss_pred EeecccchhhhcchhhhhhHHHHHHcCccHHHHHHHHHHHH-hhcccChHHHHHHHHHHHHHHHhhhccCCEEEEchhhh
Confidence 333221100 0011000 0000 0000000 00012357888887655
Q ss_pred HhhhccccCCCceEEEEccccccCCCccHHHHHHhhcccccEEEEeccCCCC
Q 042857 879 LADSSHLRGVPWEVLVVDEGHRLKNSGSKLFSLLNSFSFQHRVLLTGTPLQN 930 (1404)
Q Consensus 879 ~~d~~~L~~i~w~lVIVDEAHrlKN~~Sk~~~~L~~l~~~~rLLLTGTPlqN 930 (1404)
.. ..+....|++||||||..+.... .++..+....+++|.|=|.|-
T Consensus 507 ~~--~~l~~~~fd~viIDEAsQ~~e~~----~li~l~~~~~~~ilvGD~~QL 552 (800)
T 2wjy_A 507 GD--PRLAKMQFRSILIDESTQATEPE----CMVPVVLGAKQLILVGDHCQL 552 (800)
T ss_dssp GC--TTTTTCCCSEEEETTGGGSCHHH----HHHHHTTTBSEEEEEECTTSC
T ss_pred CC--hhhhcCCCCEEEEECCCCCCcHH----HHHHHHhcCCeEEEecccccC
Confidence 42 23566789999999997664321 223333445689999998774
No 186
>3i91_A Chromobox protein homolog 8; chromobox homolog 8, CBX8, structural genomics structural genomics consortium, SGC, chromatin regulator, N phosphoprotein, repressor; HET: M3L; 1.55A {Homo sapiens} SCOP: b.34.13.2 PDB: 3gv6_A* 3i90_A*
Probab=96.34 E-value=0.00075 Score=57.74 Aligned_cols=37 Identities=32% Similarity=0.618 Sum_probs=30.7
Q ss_pred eeEEEEEEecCccccccccCCHHHHHHHHHHHHHHHHHh
Q 042857 610 VSYEFLVKWVGKSNIHNSWIPESQLKVLAKRKLENYKAK 648 (1404)
Q Consensus 610 ~~~eylVKw~~~Sy~h~~Wv~e~~l~~~~~~~l~~~~~k 648 (1404)
+..+|||||+|.++-+++|.|++.|.. +.++..|..+
T Consensus 17 g~~~YlVkWkGy~~~~~TWEp~~nl~~--~~li~~f~~R 53 (54)
T 3i91_A 17 GRMEYLVKWKGWSQKYSTWEPEENILD--ARLLAAFEER 53 (54)
T ss_dssp TEEEEEEEETTSCGGGCEEEEGGGBCC--HHHHHHHHHC
T ss_pred CcEEEEEEEeCCCcccCcccchhHCCC--HHHHHHHHhc
Confidence 358999999999999999999998863 6677777643
No 187
>3f2u_A Chromobox protein homolog 1; human chromobox homolog 1, CBX1, structural genomics, struct genomics consortium, SGC, centromere, nucleus; 1.80A {Homo sapiens} PDB: 3tzd_A* 2l11_A* 3dm1_A*
Probab=96.33 E-value=0.00067 Score=58.28 Aligned_cols=37 Identities=30% Similarity=0.580 Sum_probs=31.1
Q ss_pred eeEEEEEEecCccccccccCCHHHHHHHHHHHHHHHHHh
Q 042857 610 VSYEFLVKWVGKSNIHNSWIPESQLKVLAKRKLENYKAK 648 (1404)
Q Consensus 610 ~~~eylVKw~~~Sy~h~~Wv~e~~l~~~~~~~l~~~~~k 648 (1404)
+..+|||||+|.++-+++|.|++.| ..+.++..|.++
T Consensus 16 g~~~YlVkWkGy~~~~~TWEp~~nl--~~~~li~~f~~~ 52 (55)
T 3f2u_A 16 GKVEYLLKWKGFSDEDNTWEPEENL--DCPDLIAEFLQS 52 (55)
T ss_dssp TEEEEEEEETTSCGGGCEEEEGGGC--CCHHHHHHHHC-
T ss_pred CeEEEEEEEEeCCCccCCeeEHHHC--CCHHHHHHHHHH
Confidence 3589999999999999999999998 467778878654
No 188
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=96.33 E-value=0.024 Score=73.39 Aligned_cols=161 Identities=18% Similarity=0.168 Sum_probs=93.7
Q ss_pred CCCHHHHHHHHHHHHhhccCCcEEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEeCCCCh-HHHHHHHHHHCCCCcE
Q 042857 755 ALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLSTM-PNWLAEFALWAPNLNV 833 (1404)
Q Consensus 755 ~L~pyQlegVnwL~~~~~~~~~~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP~Sll-~nW~rEf~kw~P~l~V 833 (1404)
.|-+.|.+++..++. +.-.++....|+|||.++..++..+... ...++||++|.... .+-...+... .+++
T Consensus 360 ~Ln~~Q~~Av~~~l~----~~~~lI~GppGTGKT~~i~~~i~~l~~~--~~~~ILv~a~tn~A~d~l~~rL~~~--g~~i 431 (802)
T 2xzl_A 360 QLNSSQSNAVSHVLQ----RPLSLIQGPPGTGKTVTSATIVYHLSKI--HKDRILVCAPSNVAVDHLAAKLRDL--GLKV 431 (802)
T ss_dssp CCCHHHHHHHHHHTT----CSEEEEECSTTSSHHHHHHHHHHHHHHH--HCCCEEEEESSHHHHHHHHHHHHHT--TCCE
T ss_pred cCCHHHHHHHHHHhc----CCCEEEECCCCCCHHHHHHHHHHHHHhC--CCCeEEEEcCcHHHHHHHHHHHHhh--CccE
Confidence 589999999987643 4567889999999999998888877643 23479999998765 5555555553 2344
Q ss_pred EEEecchh-----------HHHHHHHh-------------hhccCCC---Cccc------cccCCCCceEEEeeHHHHHh
Q 042857 834 VEYHGCAK-----------ARAIIRQY-------------EWHASDP---DNLN------KKTSSYKFNVLLTTYEMILA 880 (1404)
Q Consensus 834 vvy~G~~~-----------~R~~ir~~-------------E~~~~~~---~~~~------~~~~~~kfdVvITTYe~l~~ 880 (1404)
+-+.+... ....++.. ++..... ..+. ........+||++|...+..
T Consensus 432 lR~g~~~r~~i~~~~~~~tl~~~~~~~~~~~l~~l~~~~~~~~~ls~~~~~~~~~~~~~~~~~~l~~a~VI~~T~~~~~~ 511 (802)
T 2xzl_A 432 VRLTAKSREDVESSVSNLALHNLVGRGAKGELKNLLKLKDEVGELSASDTKRFVKLVRKTEAEILNKADVVCCTCVGAGD 511 (802)
T ss_dssp EECCCGGGTTSCCTTGGGBHHHHHHTTCCTHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHTCSEEEEETTGGGC
T ss_pred EeecccchhhhcchhhhhhHHHHHHhhcHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHhccCCEEEechhhcCh
Confidence 33222110 00000000 0000000 0000 00001245788888766542
Q ss_pred hhccccCCCceEEEEccccccCCCccHHHHHHhhcccccEEEEeccCCCC
Q 042857 881 DSSHLRGVPWEVLVVDEGHRLKNSGSKLFSLLNSFSFQHRVLLTGTPLQN 930 (1404)
Q Consensus 881 d~~~L~~i~w~lVIVDEAHrlKN~~Sk~~~~L~~l~~~~rLLLTGTPlqN 930 (1404)
..|.. .|++||||||+.+.... .++..+....+++|-|=|.|-
T Consensus 512 --~~L~~-~fd~viIDEA~q~~e~~----~li~l~~~~~~lilvGD~~QL 554 (802)
T 2xzl_A 512 --KRLDT-KFRTVLIDESTQASEPE----CLIPIVKGAKQVILVGDHQQL 554 (802)
T ss_dssp --TTCCS-CCSEEEETTGGGSCHHH----HHHHHTTTBSEEEEEECTTSC
T ss_pred --HHHhc-cCCEEEEECccccchHH----HHHHHHhCCCEEEEEeCcccc
Confidence 23444 89999999998774221 122233345689999998774
No 189
>2rsn_A Chromo domain-containing protein 1; chromodomain, protein-peptide complex, RNA-mediated gene SIL chromosomal protein, methylation; HET: M3L; NMR {Schizosaccharomyces pombe}
Probab=96.29 E-value=0.0015 Score=59.67 Aligned_cols=38 Identities=32% Similarity=0.618 Sum_probs=31.0
Q ss_pred eeEEEEEEecCccccccccCCHHHHHHHHHHHHHHHHHh
Q 042857 610 VSYEFLVKWVGKSNIHNSWIPESQLKVLAKRKLENYKAK 648 (1404)
Q Consensus 610 ~~~eylVKw~~~Sy~h~~Wv~e~~l~~~~~~~l~~~~~k 648 (1404)
+..+|||||+|+++-+++|.+++.|.. ....++.|.++
T Consensus 36 g~~~YlVkWkGy~~~~~TWEp~~nl~~-~~~li~~f~~~ 73 (75)
T 2rsn_A 36 GINEYYIKWAGYDWYDNTWEPEQNLFG-AEKVLKKWKKR 73 (75)
T ss_dssp SCEEEEEEEESSCGGGCEEEEGGGGTT-THHHHHHHHHH
T ss_pred CcEEEEEEECCCCCcCCeeecHHHccC-hHHHHHHHHHh
Confidence 357999999999999999999998853 45667777654
No 190
>1q3l_A Heterochromatin protein 1; chromodomain, HP1, chromatin, methyllysine, monomethyllysine, structural protein; HET: MLZ; 1.64A {Drosophila melanogaster} SCOP: b.34.13.2 PDB: 1kne_A* 1kna_A*
Probab=96.22 E-value=0.00093 Score=60.07 Aligned_cols=36 Identities=31% Similarity=0.697 Sum_probs=31.0
Q ss_pred eEEEEEEecCccccccccCCHHHHHHHHHHHHHHHHHh
Q 042857 611 SYEFLVKWVGKSNIHNSWIPESQLKVLAKRKLENYKAK 648 (1404)
Q Consensus 611 ~~eylVKw~~~Sy~h~~Wv~e~~l~~~~~~~l~~~~~k 648 (1404)
..+|||||+|+++-+++|.|++.| ..+.++..|..+
T Consensus 31 ~~eYlVKWkGy~~~~~TWEp~enL--~c~~lI~~F~~~ 66 (69)
T 1q3l_A 31 MVEYYLKWKGYPETENTWEPENNL--DCQDLIQQYEAS 66 (69)
T ss_dssp EEEEEEEETTSCGGGCEEEEGGGE--ECHHHHHHHHHH
T ss_pred eEEEEEEEcCCCcccCCccchHHC--CCHHHHHHHHHH
Confidence 589999999999999999999998 366778888654
No 191
>2dnv_A Chromobox protein homolog 8; chromo domain, histone H3 tail, choromatin organization modifier, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: b.34.13.2
Probab=96.14 E-value=0.001 Score=58.87 Aligned_cols=37 Identities=32% Similarity=0.595 Sum_probs=30.7
Q ss_pred eEEEEEEecCccccccccCCHHHHHHHHHHHHHHHHHhh
Q 042857 611 SYEFLVKWVGKSNIHNSWIPESQLKVLAKRKLENYKAKY 649 (1404)
Q Consensus 611 ~~eylVKw~~~Sy~h~~Wv~e~~l~~~~~~~l~~~~~k~ 649 (1404)
..+|||||+|+++-+++|.|++.|.. ..++..|.++.
T Consensus 25 ~~~YlVKWkGy~~~~~TWEp~~~l~~--~~li~~f~~~~ 61 (64)
T 2dnv_A 25 RMEYLVKWKGWSQKYSTWEPEENILD--ARLLAAFESGP 61 (64)
T ss_dssp SEEEEECCSSCCCSSCCEEETTTCCC--HHHHHHHHCCT
T ss_pred cEEEEEEECCCCcccCCccCHhHCCC--HHHHHHHHHHc
Confidence 58999999999999999999998865 46677776543
No 192
>1pfb_A Polycomb protein; chromatin, histone methylation, polycomb, chromodomain, peptide binding protein; HET: M3L; 1.40A {Drosophila melanogaster} SCOP: b.34.13.2
Probab=96.13 E-value=0.00086 Score=57.57 Aligned_cols=35 Identities=31% Similarity=0.628 Sum_probs=29.3
Q ss_pred eEEEEEEecCccccccccCCHHHHHHHHHHHHHHHHH
Q 042857 611 SYEFLVKWVGKSNIHNSWIPESQLKVLAKRKLENYKA 647 (1404)
Q Consensus 611 ~~eylVKw~~~Sy~h~~Wv~e~~l~~~~~~~l~~~~~ 647 (1404)
..+|||||+|+++-+++|.|++.|.. +.++..|.+
T Consensus 18 ~~~YlVKWkgy~~~~~TWEp~~~l~~--~~li~~f~~ 52 (55)
T 1pfb_A 18 VVEYRVKWKGWNQRYNTWEPEVNILD--RRLIDIYEQ 52 (55)
T ss_dssp EEEEEEEETTSCGGGCEEEEGGGCCS--THHHHHHHT
T ss_pred eEEEEEEEcCCCCccCcEeEHHHCCC--HHHHHHHHH
Confidence 58999999999999999999998863 566676754
No 193
>3fdt_A Chromobox protein homolog 5; chromobox homolog5, CBX5, structural GENO structural genomics consortium, SGC, centromere, nucleus, phosphoprotein; HET: M3L; 2.00A {Homo sapiens}
Probab=95.98 E-value=0.0011 Score=57.67 Aligned_cols=38 Identities=37% Similarity=0.710 Sum_probs=31.2
Q ss_pred eeEEEEEEecCccccccccCCHHHHHHHHHHHHHHHHHhh
Q 042857 610 VSYEFLVKWVGKSNIHNSWIPESQLKVLAKRKLENYKAKY 649 (1404)
Q Consensus 610 ~~~eylVKw~~~Sy~h~~Wv~e~~l~~~~~~~l~~~~~k~ 649 (1404)
+..+|||||+|.++-+++|.|++.| ..+.++..|.++.
T Consensus 17 g~~~YlVkWkGy~~~~~TWEp~~nl--~~~~li~~f~~~~ 54 (59)
T 3fdt_A 17 GQVEYLLKWKGFSEEHNTWEPEKNL--DCPELISEFMKKY 54 (59)
T ss_dssp TEEEEEEEETTSCGGGCEEEEGGGE--ECHHHHHHHHC--
T ss_pred CeEEEEEEEeCCCcccCCccchhHC--CCHHHHHHHHHhh
Confidence 3589999999999999999999998 4677788886553
No 194
>2kvm_A Chromobox protein homolog 7; histone modification, lysine methylation, chromobox, polycom chromatin-binding; HET: MLY; NMR {Mus musculus}
Probab=95.93 E-value=0.0015 Score=59.47 Aligned_cols=37 Identities=32% Similarity=0.575 Sum_probs=30.6
Q ss_pred eeEEEEEEecCccccccccCCHHHHHHHHHHHHHHHHHh
Q 042857 610 VSYEFLVKWVGKSNIHNSWIPESQLKVLAKRKLENYKAK 648 (1404)
Q Consensus 610 ~~~eylVKw~~~Sy~h~~Wv~e~~l~~~~~~~l~~~~~k 648 (1404)
+..+|||||+|+++-+|+|.|++.|.. ..++..|..+
T Consensus 27 g~~~YlVKWkGy~~~~~TWEp~~~L~~--~~li~~f~~~ 63 (74)
T 2kvm_A 27 GKVEYLVKWKGWPPKYSTWEPEEHILD--PRLVMAYEEK 63 (74)
T ss_dssp TEEEEEEEETTSCGGGCEEEETTTCSC--HHHHHHHHHH
T ss_pred CcEEEEEEEcCCCCccCeEeeHHHCCC--HHHHHHHHHH
Confidence 358999999999999999999998863 4667777654
No 195
>2ee1_A Chromodomain helicase-DNA-binding protein 4; EC 3.6.1.-, ATP- dependent helicase CHD4, CHD-4, MI-2 autoantigen 218 kDa protein, MI2-beta; NMR {Homo sapiens}
Probab=95.91 E-value=0.0012 Score=58.33 Aligned_cols=37 Identities=19% Similarity=0.195 Sum_probs=26.6
Q ss_pred eeEEEEEEecCccccccccCCHHHHHHHHHHHHHHHH
Q 042857 610 VSYEFLVKWVGKSNIHNSWIPESQLKVLAKRKLENYK 646 (1404)
Q Consensus 610 ~~~eylVKw~~~Sy~h~~Wv~e~~l~~~~~~~l~~~~ 646 (1404)
+..+|||||+|++|-.|+|.+++......+..+..|.
T Consensus 26 g~~eYLVKWkgl~y~e~TWE~~~~~~~~~~~~I~~y~ 62 (64)
T 2ee1_A 26 GHVHYLIKWRDLPYDQASWESEDVEIQDYDLFKQSYW 62 (64)
T ss_dssp CCEEEEECCTTSCTTTCEEEETTCCCTTHHHHHHHHH
T ss_pred CCEEEEEEEcCCCcccCcccCCcccCcchHHHHHHHH
Confidence 4689999999999999999998722222334445453
No 196
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=95.87 E-value=0.4 Score=60.01 Aligned_cols=67 Identities=16% Similarity=0.109 Sum_probs=50.2
Q ss_pred CCCHHHHHHHHHHHHhhccCCcEEEEcCCCchHHHHHHHHHHHHHhhcc-CCCcEEEEeCCCCh-HHHHHHHHHH
Q 042857 755 ALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFK-AKLPCLVLVPLSTM-PNWLAEFALW 827 (1404)
Q Consensus 755 ~L~pyQlegVnwL~~~~~~~~~~ILADEMGLGKTiqaIa~L~~L~~~~~-~~gP~LIVvP~Sll-~nW~rEf~kw 827 (1404)
.|.+.|.++|. ...+..++-...|+|||.+.+.-+.++....+ ....+|+|+++... .+..+.+...
T Consensus 9 ~Ln~~Q~~av~------~~~~~~lV~a~aGsGKT~~l~~ri~~l~~~~~~~~~~iL~ltft~~aa~e~~~rl~~~ 77 (647)
T 3lfu_A 9 SLNDKQREAVA------APRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVTFTNKAAAEMRHRIGQL 77 (647)
T ss_dssp TCCHHHHHHHT------CCSSCEEEEECTTSCHHHHHHHHHHHHHHTSCCCGGGEEEEESSHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHh------CCCCCEEEEECCCCCHHHHHHHHHHHHHHhCCCChhhEEEEeccHHHHHHHHHHHHHH
Confidence 58999999995 23566777778999999999999998886543 33479999987655 4455556555
No 197
>1ap0_A Modifier protein 1; chromatin-binding, protein interaction motif, alpha+beta; NMR {Mus musculus} SCOP: b.34.13.2 PDB: 1guw_A*
Probab=95.86 E-value=0.0012 Score=60.10 Aligned_cols=38 Identities=29% Similarity=0.569 Sum_probs=32.0
Q ss_pred eEEEEEEecCccccccccCCHHHHHHHHHHHHHHHHHhhC
Q 042857 611 SYEFLVKWVGKSNIHNSWIPESQLKVLAKRKLENYKAKYG 650 (1404)
Q Consensus 611 ~~eylVKw~~~Sy~h~~Wv~e~~l~~~~~~~l~~~~~k~~ 650 (1404)
..+|||||+|+++-+++|.|++.| ..+.++..|..+..
T Consensus 28 ~~~YlVKWkGy~~~~~TWEp~~nL--~~~~li~~f~~~~~ 65 (73)
T 1ap0_A 28 KVEYLLKWKGFSDEDNTWEPEENL--DCPDLIAEFLQSQK 65 (73)
T ss_dssp SEEEEEEEESSSSCCCEEEETTTC--CCHHHHHHHTTTTT
T ss_pred eEEEEEEECCCCCccCcEeeHHHC--CCHHHHHHHHHHhh
Confidence 589999999999999999999998 35677888876543
No 198
>1g6z_A CLR4 protein; transferase; NMR {Schizosaccharomyces pombe} SCOP: b.34.13.2
Probab=95.85 E-value=0.0019 Score=58.17 Aligned_cols=38 Identities=18% Similarity=0.510 Sum_probs=30.8
Q ss_pred eEE-EEEEecCccccccccCCHHHHHHHHHHHHHHHHHhh
Q 042857 611 SYE-FLVKWVGKSNIHNSWIPESQLKVLAKRKLENYKAKY 649 (1404)
Q Consensus 611 ~~e-ylVKw~~~Sy~h~~Wv~e~~l~~~~~~~l~~~~~k~ 649 (1404)
..+ |||||+|+++-+++|.|++.|. ..+.++..|..+.
T Consensus 24 ~~~~YlVKWkGy~~~~~TWEp~enL~-~~~~li~~f~~~~ 62 (70)
T 1g6z_A 24 AVKLYRIRWLNYSSRSDTWEPPENLS-GCSAVLAEWKRRK 62 (70)
T ss_dssp SCCEEEECCTTTTSSCCEEECGGGGS-SCHHHHHHHHHHH
T ss_pred cEEEEEEEECCCCCCCCceecHHHHh-hhHHHHHHHHHhc
Confidence 356 9999999999999999999985 4556777787654
No 199
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=95.82 E-value=0.022 Score=71.46 Aligned_cols=148 Identities=15% Similarity=0.142 Sum_probs=82.9
Q ss_pred CHHHHHHHHHHHHhhccCCcEEEEcCCCchHHHHHHHHHHHHHhhc-cCCCcEEEEeCCCChHH-HHHHHHHHCCCCcEE
Q 042857 757 FPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEF-KAKLPCLVLVPLSTMPN-WLAEFALWAPNLNVV 834 (1404)
Q Consensus 757 ~pyQlegVnwL~~~~~~~~~~ILADEMGLGKTiqaIa~L~~L~~~~-~~~gP~LIVvP~Sll~n-W~rEf~kw~P~l~Vv 834 (1404)
.+.|..++.-+.. +...++....|+|||.++..++..+.... ....++++++|+..... -...+..+...+.+
T Consensus 151 ~~~Q~~Ai~~~l~----~~~~vi~G~pGTGKTt~l~~ll~~l~~~~~~~~~~vll~APTg~AA~~L~e~~~~~~~~l~l- 225 (608)
T 1w36_D 151 INWQKVAAAVALT----RRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPL- 225 (608)
T ss_dssp CCHHHHHHHHHHT----BSEEEEECCTTSTHHHHHHHHHHHHHHTCSSCCCCEEEEBSSHHHHHHHHHHHTHHHHHSSC-
T ss_pred CHHHHHHHHHHhc----CCCEEEEeCCCCCHHHHHHHHHHHHHHhhhcCCCeEEEEeCChhHHHHHHHHHHHHHhcCCC-
Confidence 5789999977653 67889999999999987777776665321 22347999999877644 33333332211100
Q ss_pred EEecchhHHHHHHHhhhccCCCCccccccCCCCceEEE-eeHHH--HHhhhccccCCCceEEEEccccccCCCccHHHHH
Q 042857 835 EYHGCAKARAIIRQYEWHASDPDNLNKKTSSYKFNVLL-TTYEM--ILADSSHLRGVPWEVLVVDEGHRLKNSGSKLFSL 911 (1404)
Q Consensus 835 vy~G~~~~R~~ir~~E~~~~~~~~~~~~~~~~kfdVvI-TTYe~--l~~d~~~L~~i~w~lVIVDEAHrlKN~~Sk~~~~ 911 (1404)
.......+.. .....+-++ .+... +... .....++++||||||+.+- ...+...
T Consensus 226 -----------------~~~~~~~~~~--~~~Tih~ll~~~~~~~~~~~~--~~~~l~~d~lIIDEAsml~--~~~~~~L 282 (608)
T 1w36_D 226 -----------------TDEQKKRIPE--DASTLHRLLGAQPGSQRLRHH--AGNPLHLDVLVVDEASMID--LPMMSRL 282 (608)
T ss_dssp -----------------CSCCCCSCSC--CCBTTTSCC-----------C--TTSCCSCSEEEECSGGGCB--HHHHHHH
T ss_pred -----------------CHHHHhccch--hhhhhHhhhccCCCchHHHhc--cCCCCCCCEEEEechhhCC--HHHHHHH
Confidence 0000000000 000111111 11110 1111 1122478999999999663 3345667
Q ss_pred HhhcccccEEEEeccCCCCCh
Q 042857 912 LNSFSFQHRVLLTGTPLQNNI 932 (1404)
Q Consensus 912 L~~l~~~~rLLLTGTPlqNnl 932 (1404)
+..+....+++|.|-|-|-..
T Consensus 283 l~~l~~~~~liLvGD~~QL~~ 303 (608)
T 1w36_D 283 IDALPDHARVIFLGDRDQLAS 303 (608)
T ss_dssp HHTCCTTCEEEEEECTTSGGG
T ss_pred HHhCCCCCEEEEEcchhhcCC
Confidence 777788889999999877543
No 200
>2k1b_A Chromobox protein homolog 7; alpha/beta protein, chromatin regulator, nucleus, repressor, transcription, transcription regulation; NMR {Homo sapiens} PDB: 2l12_A* 2l1b_A*
Probab=95.59 E-value=0.002 Score=58.59 Aligned_cols=36 Identities=33% Similarity=0.622 Sum_probs=30.1
Q ss_pred eEEEEEEecCccccccccCCHHHHHHHHHHHHHHHHHh
Q 042857 611 SYEFLVKWVGKSNIHNSWIPESQLKVLAKRKLENYKAK 648 (1404)
Q Consensus 611 ~~eylVKw~~~Sy~h~~Wv~e~~l~~~~~~~l~~~~~k 648 (1404)
..+|||||+|+++-+++|.|++.|.. +.++..|.++
T Consensus 36 ~~~YlVKWkGy~~~~~TWEp~enL~~--~~li~~F~~~ 71 (73)
T 2k1b_A 36 KVEYLVKWKGWPPKYSTWEPEEHILD--PRLVMAYEEK 71 (73)
T ss_dssp EEEEEEECTTCCGGGCCEEETTSCSC--HHHHHHHHTS
T ss_pred cEEEEEEECCCCcccCeecchHHCCC--HHHHHHHHHh
Confidence 57999999999999999999998863 5677777643
No 201
>2rso_A Chromatin-associated protein SWI6; chromodomain, silencing, chromosomal protein, Met transcription; NMR {Schizosaccharomyces pombe}
Probab=95.46 E-value=0.011 Score=56.04 Aligned_cols=41 Identities=32% Similarity=0.621 Sum_probs=33.4
Q ss_pred eeEEEEEEecCccc-cccccCCHHHHHHHHHHHHHHHHHhhCc
Q 042857 610 VSYEFLVKWVGKSN-IHNSWIPESQLKVLAKRKLENYKAKYGT 651 (1404)
Q Consensus 610 ~~~eylVKw~~~Sy-~h~~Wv~e~~l~~~~~~~l~~~~~k~~~ 651 (1404)
+..+|||||+|++. -+++|.|+..|. .++.+|..|.++++.
T Consensus 46 g~~~YlVkWkGy~~~~~~TWEP~~nl~-~c~~li~~f~~~~~~ 87 (92)
T 2rso_A 46 GGYEYLLKWEGYDDPSDNTWSSEADCS-GCKQLIEAYWNEHGG 87 (92)
T ss_dssp SCEEEEEEETTCCCCTTSEEECGGGGG-TSHHHHHHHHHHHTC
T ss_pred CEEEEEEEEccCCCcccCccccHHHHh-hHHHHHHHHHHHcCC
Confidence 45899999999984 789999999984 356788889887754
No 202
>1pdq_A Polycomb protein; methyllysine, chromodomain, polycomb, lysine methylation, trimethyllysine, cation-PI, chromo, structural protein; HET: M3L; 1.76A {Drosophila melanogaster} SCOP: b.34.13.2
Probab=95.44 E-value=0.0021 Score=58.30 Aligned_cols=35 Identities=31% Similarity=0.623 Sum_probs=28.7
Q ss_pred eeEEEEEEecCccccccccCCHHHHHHHHHHHHHHHH
Q 042857 610 VSYEFLVKWVGKSNIHNSWIPESQLKVLAKRKLENYK 646 (1404)
Q Consensus 610 ~~~eylVKw~~~Sy~h~~Wv~e~~l~~~~~~~l~~~~ 646 (1404)
+..+|||||+|+++-+++|.|++.|. .+..+..|.
T Consensus 34 g~~~YlVKWkGy~~~~nTWEP~enL~--~~~lI~~F~ 68 (72)
T 1pdq_A 34 GVVEYRVKWKGWNQRYNTWEPEVNIL--DRRLIDIYE 68 (72)
T ss_dssp TEEEEEEEETTSCGGGCEEEEGGGCC--STHHHHHHC
T ss_pred CcEEEEEEECCCCCccCeecchHHCC--CHHHHHHHH
Confidence 35899999999999999999999875 355666664
No 203
>4bbq_A Lysine-specific demethylase 2A; oxidoreductase, ubiquitin, ligase, ubiquitination, demethyla ZF-CXXC DNA binding domain, CPG island, chromatin; 2.24A {Homo sapiens}
Probab=95.39 E-value=0.0049 Score=60.81 Aligned_cols=37 Identities=35% Similarity=0.775 Sum_probs=29.0
Q ss_pred eEEcCCCCCcccccccCCCCCCCCCC----CccCccccccc
Q 042857 87 LLCCDSCPRTYHLQCLDPPLKRIPNG----KWQCPKCTQKN 123 (1404)
Q Consensus 87 ll~Cd~C~~~~H~~Cl~Ppl~~~P~g----~W~C~~C~~~~ 123 (1404)
|+.|+.|+.+||..|+.++...++.+ .|.||.|...+
T Consensus 75 m~~C~~C~~~~H~~C~~~~~~~~~~~~~~~~~~C~~C~~~~ 115 (117)
T 4bbq_A 75 LMECCICNEIVHPGCLQMDGEGLLNEELPNCWECPKCYQED 115 (117)
T ss_dssp CEEETTTCCEECGGGCCSCCCCEECSSSSSEEECTTTC---
T ss_pred eEEeeecCCeEECCCCCCCccccccccCCCCeECCCCcCCC
Confidence 89999999999999999876554433 49999998764
No 204
>2h1e_A Chromo domain protein 1; CHD1, tandem chromodomains, three-stranded ANT B-sheet, hydrolase; 2.20A {Saccharomyces cerevisiae} PDB: 2dy7_A 2dy8_A
Probab=95.34 E-value=0.0072 Score=64.09 Aligned_cols=39 Identities=18% Similarity=0.457 Sum_probs=32.7
Q ss_pred CceeEEEEEEecCccccccccCCHHHHHHHHHHHHHHHH
Q 042857 608 KAVSYEFLVKWVGKSNIHNSWIPESQLKVLAKRKLENYK 646 (1404)
Q Consensus 608 ~~~~~eylVKw~~~Sy~h~~Wv~e~~l~~~~~~~l~~~~ 646 (1404)
..+..+|||||+|++|-.|+|.++..+....+..+..|.
T Consensus 137 ~~~~~~YLVKWkgl~y~e~TWE~~~~~~~~~~~~I~~y~ 175 (177)
T 2h1e_A 137 GTSQLQYLVKWRRLNYDEATWENATDIVKLAPEQVKHFQ 175 (177)
T ss_dssp SCEEEEEEEEETTSCSTTCEEEEHHHHHHHCHHHHHHHT
T ss_pred CCCcEEEEEEeCCCCcccccccChHHhhhhHHHHHHHHH
Confidence 356789999999999999999999998765667777664
No 205
>2b2y_A CHD-1, chromodomain-helicase-DNA-binding protein 1; three stranded antiparallel beta sheet, alpha helix linker, peptide binding protein; 2.35A {Homo sapiens} SCOP: b.34.13.2 b.34.13.2 PDB: 2b2u_A* 2b2v_A* 2b2w_A 2b2t_A*
Probab=95.27 E-value=0.014 Score=62.33 Aligned_cols=39 Identities=15% Similarity=0.318 Sum_probs=33.8
Q ss_pred eeEEEEEEecCccccccccCCHHHHHHHHHHHHHHHHHh
Q 042857 610 VSYEFLVKWVGKSNIHNSWIPESQLKVLAKRKLENYKAK 648 (1404)
Q Consensus 610 ~~~eylVKw~~~Sy~h~~Wv~e~~l~~~~~~~l~~~~~k 648 (1404)
+..+|||||+|++|-.|+|.+++.+....+..+..|..+
T Consensus 147 g~~~yLVKWkgl~Y~e~TWE~~~~i~~~~~~~I~~f~~R 185 (187)
T 2b2y_A 147 GYPDYYCKWQGLPYSECSWEDGALISKKFQACIDEYFSR 185 (187)
T ss_dssp SCEEEEEEETTSCGGGCEEECHHHHHHHHHHHHHHHHHT
T ss_pred CcEEEEEEECCCChhhCcccchhhhhhhHHHHHHHHHhh
Confidence 467999999999999999999998876677888888765
No 206
>3g7l_A Chromo domain-containing protein 1; chromodomain, protein-peptide complex, silencing, cell cycle, chromosome partition, DNA-binding, nucleus; HET: M3L; 2.20A {Schizosaccharomyces pombe}
Probab=95.24 E-value=0.0041 Score=54.53 Aligned_cols=33 Identities=30% Similarity=0.571 Sum_probs=26.4
Q ss_pred EEEEEEecCccccccccCCHHHHHHHHHHHHHHHH
Q 042857 612 YEFLVKWVGKSNIHNSWIPESQLKVLAKRKLENYK 646 (1404)
Q Consensus 612 ~eylVKw~~~Sy~h~~Wv~e~~l~~~~~~~l~~~~ 646 (1404)
.+|||||+|.++-+++|.|++.|. .+..+..|.
T Consensus 24 ~~YlVkWkGy~~~~~TWEp~~nl~--~~~li~~~~ 56 (61)
T 3g7l_A 24 NEYYIKWAGYDWYDNTWEPEQNLF--GAEKVLKKW 56 (61)
T ss_dssp EEEEEEETTSCGGGCEEEEGGGGT--BCHHHHHHH
T ss_pred EEEEEEEeCCCCcCCceeeHhHCC--CHHHHHHHH
Confidence 599999999999999999999884 444444443
No 207
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=95.18 E-value=0.1 Score=61.79 Aligned_cols=155 Identities=15% Similarity=0.171 Sum_probs=88.2
Q ss_pred CCCCHHHHHHHHHHHHhhccCCcEEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEeCCCCh-HHHHHHHHHHC---C
Q 042857 754 GALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLSTM-PNWLAEFALWA---P 829 (1404)
Q Consensus 754 ~~L~pyQlegVnwL~~~~~~~~~~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP~Sll-~nW~rEf~kw~---P 829 (1404)
..|.|||...+..|. ..+..++.-.-+.|||..+.+++.+.... .....+++++|..-. ..+.+.+..++ |
T Consensus 162 ~~L~p~Qk~il~~l~----~~R~~vi~~sRq~GKT~l~a~~~l~~a~~-~~g~~v~~vA~t~~qA~~vf~~i~~mi~~~P 236 (385)
T 2o0j_A 162 VQLRDYQRDMLKIMS----SKRMTVCNLSRQLGKTTVVAIFLAHFVCF-NKDKAVGILAHKGSMSAEVLDRTKQAIELLP 236 (385)
T ss_dssp CCCCHHHHHHHHHHH----HSSEEEEEECSSSCHHHHHHHHHHHHHHS-SSSCEEEEEESSHHHHHHHHHHHHHHHHHSC
T ss_pred CCCCHHHHHHHHhhc----cCcEEEEEEcCcCChhHHHHHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHHHHHHhCh
Confidence 479999999887663 23457788889999999877777664433 233468888887533 23435555543 3
Q ss_pred C-CcEEEEecchhHHHHHHHhhhccCCCCccccccCCCCceEEEeeHHHHHhhhccccCCCceEEEEccccccCCCccHH
Q 042857 830 N-LNVVEYHGCAKARAIIRQYEWHASDPDNLNKKTSSYKFNVLLTTYEMILADSSHLRGVPWEVLVVDEGHRLKNSGSKL 908 (1404)
Q Consensus 830 ~-l~Vvvy~G~~~~R~~ir~~E~~~~~~~~~~~~~~~~kfdVvITTYe~l~~d~~~L~~i~w~lVIVDEAHrlKN~~Sk~ 908 (1404)
. +.......+ ..++.+ ..+..-.++++ +...+.+...+++|+||+|.+++. ..+
T Consensus 237 ~ll~~~~~~~~--------~~~I~f----------~nGs~i~~lsa------~~~slrG~~~~~viiDE~a~~~~~-~el 291 (385)
T 2o0j_A 237 DFLQPGIVEWN--------KGSIEL----------DNGSSIGAYAS------SPDAVRGNSFAMIYIEDCAFIPNF-HDS 291 (385)
T ss_dssp TTTSCCEEEEC--------SSEEEE----------TTSCEEEEEEC------SHHHHHTSCCSEEEEESGGGSTTH-HHH
T ss_pred HhhhhhhccCC--------ccEEEe----------CCCCEEEEEEC------CCCCccCCCCCEEEechhhhcCCC-HHH
Confidence 2 110000000 000000 01111122222 334566778899999999999863 233
Q ss_pred HHHHhh-cc--cccEEEEeccCCCCChHHHHHHhh
Q 042857 909 FSLLNS-FS--FQHRVLLTGTPLQNNIGEMYNLLN 940 (1404)
Q Consensus 909 ~~~L~~-l~--~~~rLLLTGTPlqNnl~EL~sLL~ 940 (1404)
..++.. +. ...++++++||-..+ .+|.+..
T Consensus 292 ~~al~~~ls~~~~~kiiiiSTP~g~n--~fy~l~~ 324 (385)
T 2o0j_A 292 WLAIQPVISSGRRSKIIITTTPNGLN--HFYDIWT 324 (385)
T ss_dssp HHHHHHHHHSTTCCEEEEEECCCSSS--HHHHHHH
T ss_pred HHHHHHHhhcCCCCcEEEEeCCCCch--hHHHHHH
Confidence 444332 22 347889999996553 4555443
No 208
>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens}
Probab=95.08 E-value=0.0026 Score=76.47 Aligned_cols=45 Identities=24% Similarity=0.710 Sum_probs=34.4
Q ss_pred ccccccCC----CceEEcCCCCCcccccccCCCCCCCC---CCCccCcccccccc
Q 042857 77 ECVICDLG----GNLLCCDSCPRTYHLQCLDPPLKRIP---NGKWQCPKCTQKND 124 (1404)
Q Consensus 77 ~C~~C~~~----g~ll~Cd~C~~~~H~~Cl~Ppl~~~P---~g~W~C~~C~~~~~ 124 (1404)
+| +|+.+ |.|+.||.|..|||..|++ +...+ .+.|+|+.|.....
T Consensus 7 yC-iC~~~~d~~~~MIqCD~C~~WfH~~CVg--i~~~~~~~~~~y~C~~C~~~~~ 58 (447)
T 3kv4_A 7 YC-LCRLPYDVTRFMIECDMCQDWFHGSCVG--VEEEKAADIDLYHCPNCEVLHG 58 (447)
T ss_dssp ET-TTTEECCTTSCEEECTTTCCEEEHHHHT--CCHHHHTTEEECCCHHHHHHHC
T ss_pred EE-eCCCcCCCCCCeEEcCCCCcccccccCC--cCcccccCCCEEECCCCccccC
Confidence 45 47663 5699999999999999999 44332 26799999986643
No 209
>3pur_A Lysine-specific demethylase 7 homolog; oxidoreductase-oxidoreductase inhibitor complex; HET: 2HG; 2.10A {Caenorhabditis elegans} PDB: 3n9l_A 3n9m_A* 3n9o_A* 3n9p_A* 3n9q_A* 3n9n_A* 3puq_A*
Probab=94.99 E-value=0.0069 Score=73.39 Aligned_cols=37 Identities=32% Similarity=0.689 Sum_probs=28.9
Q ss_pred ceEEcCCCCCcccccccCCCCCCC-CCCCccCcccccc
Q 042857 86 NLLCCDSCPRTYHLQCLDPPLKRI-PNGKWQCPKCTQK 122 (1404)
Q Consensus 86 ~ll~Cd~C~~~~H~~Cl~Ppl~~~-P~g~W~C~~C~~~ 122 (1404)
.|++||.|..|||..|++-.-... +.+.|+||.|...
T Consensus 57 ~mI~CD~C~~WfH~~CVgi~~~~a~~~~~y~Cp~C~~~ 94 (528)
T 3pur_A 57 QWIGCDSCQTWYHFLCSGLEQFEYYLYEKFFCPKCVPH 94 (528)
T ss_dssp SEEECTTTCCEEEGGGTTCCGGGTTTEEECCCTTTHHH
T ss_pred CEEECCCCCcCCCCcCCCCChhHhcCCCeEECcCCcCC
Confidence 499999999999999999332222 2377999999865
No 210
>3rsn_A SET1/ASH2 histone methyltransferase complex subun; PHD domain, winged helix domain, binding, transcription; 2.10A {Homo sapiens} PDB: 3s32_A
Probab=94.38 E-value=0.024 Score=59.60 Aligned_cols=46 Identities=13% Similarity=0.268 Sum_probs=32.4
Q ss_pred ccccccCCCc----eEEcCCCCCcccccccCCCCCCCCCCC----ccCccccccc
Q 042857 77 ECVICDLGGN----LLCCDSCPRTYHLQCLDPPLKRIPNGK----WQCPKCTQKN 123 (1404)
Q Consensus 77 ~C~~C~~~g~----ll~Cd~C~~~~H~~Cl~Ppl~~~P~g~----W~C~~C~~~~ 123 (1404)
+|. |+.+|+ +|.|+.|.+|||..|+..+...+-.++ +.|..|....
T Consensus 7 yCY-CG~~~~~~~~mLqC~~C~qWFH~~Cl~~~~~~~lp~~~fY~F~C~~C~~~g 60 (177)
T 3rsn_A 7 SVD-EENGRQLGEVELQCGICTKWFTADTFGIDTSSCLPFMTNYSFHCNVCHHSG 60 (177)
T ss_dssp -----CTTCCTTSCEEECTTTCCEEEGGGGTCCCTTCCTTCCSEEEECTTTSTTS
T ss_pred EEE-cCCCCCCCceeEeeccccceecHHHhcccccCccccceeEEEEccccCCCC
Confidence 565 888776 999999999999999986544432233 6699998754
No 211
>4hae_A CDY-like 2, chromodomain Y-like protein 2; protein binding, structural genomics consortiu; 2.00A {Homo sapiens}
Probab=94.29 E-value=0.0088 Score=55.45 Aligned_cols=25 Identities=32% Similarity=0.918 Sum_probs=22.3
Q ss_pred eeEEEEEEecCccccccccCCHHHH
Q 042857 610 VSYEFLVKWVGKSNIHNSWIPESQL 634 (1404)
Q Consensus 610 ~~~eylVKw~~~Sy~h~~Wv~e~~l 634 (1404)
+..+|||||+|+++-+++|.|++.|
T Consensus 38 g~~~YlVKWkGy~~~~~TWEp~~nl 62 (81)
T 4hae_A 38 GKWEYLIRWKGYGSTEDTWEPEHHL 62 (81)
T ss_dssp SCEEEEEEETTCCGGGCEEEEGGGE
T ss_pred CeEEEEEEECCCCCCCCeEEeHHHh
Confidence 4579999999999999999998765
No 212
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=94.23 E-value=0.11 Score=55.17 Aligned_cols=37 Identities=24% Similarity=0.254 Sum_probs=27.2
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEeCC
Q 042857 775 KNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPL 814 (1404)
Q Consensus 775 ~~~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP~ 814 (1404)
.-.++...||.|||..++.++..+... ..+++++.|.
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~~~~---g~~v~~~~~~ 40 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIYKLG---KKKVAVFKPK 40 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHT---TCEEEEEEEC
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHC---CCeEEEEeec
Confidence 345788899999999888777655422 3468888876
No 213
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=93.99 E-value=0.33 Score=53.25 Aligned_cols=40 Identities=20% Similarity=0.121 Sum_probs=28.4
Q ss_pred cCCcEEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEeCCC
Q 042857 773 KSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLS 815 (1404)
Q Consensus 773 ~~~~~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP~S 815 (1404)
.+.-.++..+||.|||..++.++..+... ..+++++.|.-
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~r~~~~---g~kVli~~~~~ 50 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLHRLEYA---DVKYLVFKPKI 50 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHHHHHHT---TCCEEEEEECC
T ss_pred CcEEEEEECCCCCcHHHHHHHHHHHHHhc---CCEEEEEEecc
Confidence 34445788999999999988887766432 33677777643
No 214
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=93.89 E-value=0.015 Score=60.14 Aligned_cols=56 Identities=32% Similarity=0.784 Sum_probs=45.5
Q ss_pred CCCCcccccccccccCCCceEEcC--CCCCcccccccCCCCCC------CCCCCccCccccccc
Q 042857 68 KKGNDGYYYECVICDLGGNLLCCD--SCPRTYHLQCLDPPLKR------IPNGKWQCPKCTQKN 123 (1404)
Q Consensus 68 ~~~~d~~~~~C~~C~~~g~ll~Cd--~C~~~~H~~Cl~Ppl~~------~P~g~W~C~~C~~~~ 123 (1404)
..++|+++.||.+|..||+|++|| .|++.|=..|+.--+.. .....|.|-.|....
T Consensus 72 ~~DeDG~~~yC~wC~~Gg~l~~Cdn~~C~r~FC~~CI~~nvG~~~~~~i~~~d~W~Cy~C~P~~ 135 (159)
T 3a1b_A 72 QYDDDGYQSYCTICCGGREVLMCGNNNCCRCFCVECVDLLVGPGAAQAAIKEDPWNCYMCGHKG 135 (159)
T ss_dssp CBCTTSSBSSCTTTSCCSEEEECSSTTTCCEEEHHHHHHHTCTTHHHHHHTSSSCCCTTTCSSC
T ss_pred ccCCCCCcceeeEecCCCeEEeeCCCCCCCchhHHHHHHhcCHhHHHHHhccCCCEEEecCCcc
Confidence 346788999999999999999999 89999999998643322 345679999998763
No 215
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=93.65 E-value=0.21 Score=57.57 Aligned_cols=46 Identities=15% Similarity=0.349 Sum_probs=38.8
Q ss_pred CCHHHHHHHHHHHHhhccCC---cEEEEcCCCchHHHHHHHHHHHHHhh
Q 042857 756 LFPHQLEALNWLRKCWHKSK---NVILADEMGLGKTVSACAFISSLYCE 801 (1404)
Q Consensus 756 L~pyQlegVnwL~~~~~~~~---~~ILADEMGLGKTiqaIa~L~~L~~~ 801 (1404)
++|+|.+.+..|...+.+++ ..+|..+.|.|||..+.+++..+...
T Consensus 3 ~~pw~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la~~l~~~ 51 (334)
T 1a5t_A 3 WYPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLLCQ 51 (334)
T ss_dssp CCGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHHTCS
T ss_pred CCCchHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHHHHHHHhCC
Confidence 68999999998888877654 37889999999999999999888644
No 216
>1x3p_A Cpsrp43; chromo-2 domain, chloroplasts, LHCP, protein translocation, unknown function; NMR {Arabidopsis thaliana} SCOP: b.34.13.2
Probab=93.49 E-value=0.0035 Score=53.62 Aligned_cols=33 Identities=24% Similarity=0.595 Sum_probs=25.1
Q ss_pred eE-EEEEEecCccccccccCCHHHHHHHHHHHHHHHHHh
Q 042857 611 SY-EFLVKWVGKSNIHNSWIPESQLKVLAKRKLENYKAK 648 (1404)
Q Consensus 611 ~~-eylVKw~~~Sy~h~~Wv~e~~l~~~~~~~l~~~~~k 648 (1404)
.. +|||||+|. -+|+|.|++.|. +..+..|..+
T Consensus 16 ~~~~YlVKWkgy--~~~TWEp~~nL~---~~li~~f~~~ 49 (54)
T 1x3p_A 16 KTIEYLVKWTDM--SDATWEPQDNVD---STLVLLYQQQ 49 (54)
T ss_dssp CCCCBCCCCSSS--SSCSCSTTCCSS---SSSHHHHTSS
T ss_pred cEEEEEEEECCC--CcCCccchHHCC---HHHHHHHHHH
Confidence 34 999999994 789999998864 5556666543
No 217
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=92.96 E-value=0.7 Score=57.67 Aligned_cols=147 Identities=14% Similarity=0.120 Sum_probs=83.1
Q ss_pred CCCCHHHHHHHHHHHHhhccCCcEEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEeCCCCh-HHHHHHHHHHCCCC-
Q 042857 754 GALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLSTM-PNWLAEFALWAPNL- 831 (1404)
Q Consensus 754 ~~L~pyQlegVnwL~~~~~~~~~~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP~Sll-~nW~rEf~kw~P~l- 831 (1404)
..|.|||...+..| + ..+..++.-.-|.|||..+.+++.+..... ....++++.|..-. ......+..++-.+
T Consensus 162 ~~l~p~Q~~i~~~l---~-~~r~~~i~~~Rq~GKS~~~a~~~l~~~~~~-~~~~i~~va~t~~qA~~~~~~i~~~i~~~p 236 (592)
T 3cpe_A 162 VQLRDYQRDMLKIM---S-SKRMTVCNLSRQLGKTTVVAIFLAHFVCFN-KDKAVGILAHKGSMSAEVLDRTKQAIELLP 236 (592)
T ss_dssp CCCCHHHHHHHHHH---H-HCSEEEEEECSSSCHHHHHHHHHHHHHHTS-SSCEEEEEESSHHHHHHHHHHHHHHHTTSC
T ss_pred CcCCHHHHHHHHhh---c-cccEEEEEEcCccChHHHHHHHHHHHHHhC-CCCeEEEEECCHHHHHHHHHHHHHHHHhCh
Confidence 47999999887765 2 245677888999999998776666554333 23478888887533 33445666554211
Q ss_pred ---cEEEEecchhHHHHHHHhhhccCCCCccccccCCCCceEEEeeHHHHHhhhccccCCCceEEEEccccccCCCccHH
Q 042857 832 ---NVVEYHGCAKARAIIRQYEWHASDPDNLNKKTSSYKFNVLLTTYEMILADSSHLRGVPWEVLVVDEGHRLKNSGSKL 908 (1404)
Q Consensus 832 ---~Vvvy~G~~~~R~~ir~~E~~~~~~~~~~~~~~~~kfdVvITTYe~l~~d~~~L~~i~w~lVIVDEAHrlKN~~Sk~ 908 (1404)
.......+ ..++.+ .....+.++ + .+...+.+...+++|+||+|.+++.. .+
T Consensus 237 ~~~~~~~~~~~--------~~~i~~---------~nGs~i~~~--s-----~~~~~lrG~~~~~~iiDE~~~~~~~~-~l 291 (592)
T 3cpe_A 237 DFLQPGIVEWN--------KGSIEL---------DNGSSIGAY--A-----SSPDAVRGNSFAMIYIEDCAFIPNFH-DS 291 (592)
T ss_dssp TTTSCCEEEEC--------SSEEEE---------TTSCEEEEE--E-----CCHHHHHHSCCSEEEEETGGGCTTHH-HH
T ss_pred HhhccccccCC--------ccEEEe---------cCCCEEEEE--e-----CCCCCccCCCcceEEEehhccCCchh-HH
Confidence 10000000 000000 011112222 1 12334455678899999999997632 44
Q ss_pred HHHHhh-cc--cccEEEEeccCCCC
Q 042857 909 FSLLNS-FS--FQHRVLLTGTPLQN 930 (1404)
Q Consensus 909 ~~~L~~-l~--~~~rLLLTGTPlqN 930 (1404)
..++.. +. ...++++++||-..
T Consensus 292 ~~~~~~~l~~~~~~~ii~isTP~~~ 316 (592)
T 3cpe_A 292 WLAIQPVISSGRRSKIIITTTPNGL 316 (592)
T ss_dssp HHHHHHHHSSSSCCEEEEEECCCTT
T ss_pred HHHHHHHhccCCCceEEEEeCCCCc
Confidence 444433 22 34689999999554
No 218
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=92.29 E-value=0.22 Score=56.07 Aligned_cols=41 Identities=17% Similarity=0.013 Sum_probs=28.6
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHHhhccC-CCcEEEEeCC
Q 042857 774 SKNVILADEMGLGKTVSACAFISSLYCEFKA-KLPCLVLVPL 814 (1404)
Q Consensus 774 ~~~~ILADEMGLGKTiqaIa~L~~L~~~~~~-~gP~LIVvP~ 814 (1404)
+.+.+|..+.|+|||..+-++...+...... ..|++.+.+.
T Consensus 67 ~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~ 108 (309)
T 3syl_A 67 TLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRD 108 (309)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGG
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHH
Confidence 3468999999999999998888776543322 3355555543
No 219
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=92.00 E-value=0.22 Score=59.86 Aligned_cols=108 Identities=18% Similarity=0.081 Sum_probs=68.3
Q ss_pred EEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEeCCCCh-HHHHHHHHHHCCCCcEEEEecchhHHHHHHHhhhccCC
Q 042857 777 VILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLSTM-PNWLAEFALWAPNLNVVEYHGCAKARAIIRQYEWHASD 855 (1404)
Q Consensus 777 ~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP~Sll-~nW~rEf~kw~P~l~Vvvy~G~~~~R~~ir~~E~~~~~ 855 (1404)
.++....|.|||.....++. ..+.||++|.... ..|.+.+.+-. .
T Consensus 164 ~~I~G~aGsGKTt~I~~~~~--------~~~~lVlTpT~~aa~~l~~kl~~~~----------~---------------- 209 (446)
T 3vkw_A 164 VLVDGVPGCGKTKEILSRVN--------FEEDLILVPGRQAAEMIRRRANASG----------I---------------- 209 (446)
T ss_dssp EEEEECTTSCHHHHHHHHCC--------TTTCEEEESCHHHHHHHHHHHTTTS----------C----------------
T ss_pred EEEEcCCCCCHHHHHHHHhc--------cCCeEEEeCCHHHHHHHHHHhhhcC----------c----------------
Confidence 46777899999987655442 1468999998755 67776653210 0
Q ss_pred CCccccccCCCCceEEEeeHHHHHhhhccccCCCceEEEEccccccCCCccHHHHHHhhcccccEEEEeccCCCC
Q 042857 856 PDNLNKKTSSYKFNVLLTTYEMILADSSHLRGVPWEVLVVDEGHRLKNSGSKLFSLLNSFSFQHRVLLTGTPLQN 930 (1404)
Q Consensus 856 ~~~~~~~~~~~kfdVvITTYe~l~~d~~~L~~i~w~lVIVDEAHrlKN~~Sk~~~~L~~l~~~~rLLLTGTPlqN 930 (1404)
...-+.-+.|++.+...........+++|||||+..+- ...+...+..+.. .+++|.|=|-|-
T Consensus 210 ---------~~~~~~~V~T~dsfL~~~~~~~~~~~d~liiDE~sm~~--~~~l~~l~~~~~~-~~vilvGD~~Ql 272 (446)
T 3vkw_A 210 ---------IVATKDNVRTVDSFLMNYGKGARCQFKRLFIDEGLMLH--TGCVNFLVEMSLC-DIAYVYGDTQQI 272 (446)
T ss_dssp ---------CCCCTTTEEEHHHHHHTTTSSCCCCCSEEEEETGGGSC--HHHHHHHHHHTTC-SEEEEEECTTSC
T ss_pred ---------cccccceEEEeHHhhcCCCCCCCCcCCEEEEeCcccCC--HHHHHHHHHhCCC-CEEEEecCcccc
Confidence 00012337788887765544444568999999998662 2233333344444 899999998664
No 220
>2b2y_C CHD-1, chromodomain-helicase-DNA-binding protein 1; three stranded antiparallel beta sheet, alpha helix linker, peptide binding protein; 2.35A {Homo sapiens} SCOP: b.34.13.2 PDB: 2b2u_C* 2b2v_C* 2b2t_C* 2b2w_C
Probab=91.80 E-value=0.047 Score=53.55 Aligned_cols=37 Identities=19% Similarity=0.315 Sum_probs=28.6
Q ss_pred hccchhhh------hhhccCCCCcceeeeccCCCCCCcccccCC
Q 042857 660 RWKQPQRV------ISLRSSKDGTREAFVKWTGLPYDECTWEKL 697 (1404)
Q Consensus 660 e~~~~eRi------i~~r~~~~~~~eylVKW~gL~Y~~~TWE~~ 697 (1404)
....++.| ++.|. ..+..+|||||+|.++..+|||..
T Consensus 35 ~~Y~VE~i~Dp~~ildkR~-~~g~~eYlVKWkG~s~~~nTWEp~ 77 (115)
T 2b2y_C 35 TIYAVEADGDPNAGFEKNK-EPGEIQYLIKWKGWSHIHNTWETE 77 (115)
T ss_dssp SHHHHHHHCBTTTTCCTTS-SSCEEEEEEEETTSCGGGCEEECH
T ss_pred ceEEEeecCCcccccccce-eCCcEEEEEEECCCCchhcccCCH
Confidence 34455654 67664 458889999999999999999964
No 221
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=91.78 E-value=0.025 Score=66.27 Aligned_cols=56 Identities=32% Similarity=0.749 Sum_probs=44.8
Q ss_pred CCCCcccccccccccCCCceEEcC--CCCCcccccccCCCCCC------CCCCCccCccccccc
Q 042857 68 KKGNDGYYYECVICDLGGNLLCCD--SCPRTYHLQCLDPPLKR------IPNGKWQCPKCTQKN 123 (1404)
Q Consensus 68 ~~~~d~~~~~C~~C~~~g~ll~Cd--~C~~~~H~~Cl~Ppl~~------~P~g~W~C~~C~~~~ 123 (1404)
..++|+++.||..|..||++++|| .|+++|=..|+.--+.. .....|.|-.|..+.
T Consensus 86 ~~D~DG~~~yCr~C~~Gg~l~~Cdn~~C~r~FC~~Ci~~n~g~~~~~~i~~~d~W~Cf~C~p~p 149 (386)
T 2pv0_B 86 LYDDDGYQSYCSICCSGETLLICGNPDCTRCYCFECVDSLVGPGTSGKVHAMSNWVCYLCLPSS 149 (386)
T ss_dssp CBCSSSSBCSCTTTCCCSSCEECCSTTCCCEECHHHHHHHTCTTHHHHHHHCSSCCCTTTSSCC
T ss_pred ccCCCCCcccceEcCCCCeEEEeCCCCCCcchHHHHHHHhcChhHHHHhhccCCceEEEcCCcc
Confidence 345788999999999999999999 99999999998743311 123669999998763
No 222
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=91.65 E-value=0.39 Score=52.38 Aligned_cols=35 Identities=20% Similarity=0.171 Sum_probs=25.9
Q ss_pred EEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEeCCC
Q 042857 778 ILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLS 815 (1404)
Q Consensus 778 ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP~S 815 (1404)
++...||.|||..++..+..+. ....++||+.|.-
T Consensus 32 vitG~MgsGKTT~lL~~a~r~~---~~g~kVli~k~~~ 66 (214)
T 2j9r_A 32 VICGSMFSGKSEELIRRVRRTQ---FAKQHAIVFKPCI 66 (214)
T ss_dssp EEECSTTSCHHHHHHHHHHHHH---HTTCCEEEEECC-
T ss_pred EEECCCCCcHHHHHHHHHHHHH---HCCCEEEEEEecc
Confidence 4788999999998888776554 2334689988853
No 223
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=90.65 E-value=0.046 Score=54.47 Aligned_cols=36 Identities=25% Similarity=0.715 Sum_probs=28.4
Q ss_pred eEEcCCCCCcccccccCCCC------CCCCC-CCccCcccccc
Q 042857 87 LLCCDSCPRTYHLQCLDPPL------KRIPN-GKWQCPKCTQK 122 (1404)
Q Consensus 87 ll~Cd~C~~~~H~~Cl~Ppl------~~~P~-g~W~C~~C~~~ 122 (1404)
|+.||.|..|||..|..-.- ..+|. ..|.||.|...
T Consensus 2 mi~c~~c~~w~H~~c~~~~~~~~~~l~~lp~~~~~~c~~C~~~ 44 (140)
T 2ku7_A 2 MMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTER 44 (140)
T ss_dssp CCCCSCCSSCHHHHHCCCCHHHHHHHHSSCTTTTCCSSCCTTT
T ss_pred ccccccCCCccCCcccccCHHHHHHHhhccccceeeCcccccc
Confidence 78999999999999998321 34563 46999999865
No 224
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=90.32 E-value=0.12 Score=50.32 Aligned_cols=38 Identities=18% Similarity=0.399 Sum_probs=32.6
Q ss_pred cccccCCCceEEcCCCCCcccccccCCCCCCCCCCCccC
Q 042857 78 CVICDLGGNLLCCDSCPRTYHLQCLDPPLKRIPNGKWQC 116 (1404)
Q Consensus 78 C~~C~~~g~ll~Cd~C~~~~H~~Cl~Ppl~~~P~g~W~C 116 (1404)
|.+|++... +.|..|+.+||..|+.++|...|.+.|+|
T Consensus 61 C~~C~k~~~-~~C~~Cp~sfC~~c~~g~l~~~~~~~~~c 98 (107)
T 4gne_A 61 CDECSSAAV-SFCEFCPHSFCKDHEKGALVPSALEGRLC 98 (107)
T ss_dssp CTTTCSBCC-EECSSSSCEECTTTCTTSCEECTTTTCEE
T ss_pred CCcCCCCCC-cCcCCCCcchhhhccCCcceecCCCCcee
Confidence 455665554 78999999999999999999999999998
No 225
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=90.16 E-value=0.84 Score=57.34 Aligned_cols=101 Identities=14% Similarity=0.175 Sum_probs=62.5
Q ss_pred HcCCeEEEEecchhHHHHHHHHHhhhcCCceEEEEeCCCCHHHHHHHHHHHhcCCCceEEEeec--ccccccccccC--C
Q 042857 1085 KEGHRVLIFSQMTKLLDILEDYLNIEFGPKTYERVDGSVSVGDRQAAITRFNQDKSRFVFLLST--RSCGLGINLAT--A 1160 (1404)
Q Consensus 1085 ~~G~KVLIFSq~~~~LDiLed~L~~~f~g~~y~rLdGs~s~~eRq~~Id~Fn~~~s~~VfLLST--rAgG~GINL~~--A 1160 (1404)
..+.++|||...-.+++.+.+.|. .+ + +. ..-+++..+|..++++|. +++. +|+++ ....+|||+.. +
T Consensus 446 ~~~g~~lvlF~Sy~~l~~v~~~l~-~~-~--~~-~~q~~~~~~~~~ll~~f~-~~~~--vL~~v~~gsf~EGiD~~g~~l 517 (620)
T 4a15_A 446 KVKKNTIVYFPSYSLMDRVENRVS-FE-H--MK-EYRGIDQKELYSMLKKFR-RDHG--TIFAVSGGRLSEGINFPGNEL 517 (620)
T ss_dssp HHCSCEEEEESCHHHHHHHTSSCC-SC-C--EE-CCTTCCSHHHHHHHHHHT-TSCC--EEEEETTSCC--------CCC
T ss_pred hCCCCEEEEeCCHHHHHHHHHHHH-hc-c--hh-ccCCCChhHHHHHHHHhc-cCCc--EEEEEecCceeccccCCCCce
Confidence 346678999888888888877775 21 2 22 334445568999999998 3333 55554 58899999975 7
Q ss_pred CEEEEEcCCCC-------------------HhH----------HHHHHHhhhccCCCCcEEE
Q 042857 1161 DTVIIYDSDFN-------------------PHA----------DIQAMNRAHRIGQSKRLLV 1193 (1404)
Q Consensus 1161 dtVIi~DsdWN-------------------P~~----------d~QAigRahRiGQ~k~V~V 1193 (1404)
..|||.-.|+- +.. ..|++||+-|--+-+-|.+
T Consensus 518 ~~viI~~lPfp~~~p~~~ar~~~~~~~~g~~~~~~y~~pa~~~l~Qa~GRlIR~~~D~G~v~ 579 (620)
T 4a15_A 518 EMIILAGLPFPRPDAINRSLFDYYERKYGKGWEYSVVYPTAIKIRQEIGRLIRSAEDTGACV 579 (620)
T ss_dssp CEEEESSCCCCCCCHHHHHHHHHHHHHHSCHHHHHTHHHHHHHHHHHHHTTCCSTTCCEEEE
T ss_pred EEEEEEcCCCCCCCHHHHHHHHHHHHhhCCCchHHhHHHHHHHHHHHhCccccCCCceEEEE
Confidence 89999887752 111 2588899888666555544
No 226
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=90.12 E-value=1.2 Score=50.54 Aligned_cols=41 Identities=24% Similarity=0.368 Sum_probs=27.8
Q ss_pred CceEEEEccccccC-C-CccHHHHHHhhcccccEEEEeccCCC
Q 042857 889 PWEVLVVDEGHRLK-N-SGSKLFSLLNSFSFQHRVLLTGTPLQ 929 (1404)
Q Consensus 889 ~w~lVIVDEAHrlK-N-~~Sk~~~~L~~l~~~~rLLLTGTPlq 929 (1404)
...+|||||+|.+. . ....+...+.......++++|.++..
T Consensus 105 ~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~ 147 (324)
T 3u61_B 105 RQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNID 147 (324)
T ss_dssp CEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGG
T ss_pred CCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCcc
Confidence 56799999999995 2 22334455555556678888877654
No 227
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=90.10 E-value=0.88 Score=48.57 Aligned_cols=36 Identities=22% Similarity=0.100 Sum_probs=26.7
Q ss_pred cEEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEeCC
Q 042857 776 NVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPL 814 (1404)
Q Consensus 776 ~~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP~ 814 (1404)
=.++...||.|||..++..+..+. .....++|+.|.
T Consensus 10 i~v~~G~mgsGKTT~ll~~a~r~~---~~g~kV~v~k~~ 45 (191)
T 1xx6_A 10 VEVIVGPMYSGKSEELIRRIRRAK---IAKQKIQVFKPE 45 (191)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH---HTTCCEEEEEEC
T ss_pred EEEEECCCCCcHHHHHHHHHHHHH---HCCCEEEEEEec
Confidence 346788999999988887776654 233468888886
No 228
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=90.08 E-value=2.5 Score=43.88 Aligned_cols=25 Identities=28% Similarity=0.521 Sum_probs=20.8
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHH
Q 042857 775 KNVILADEMGLGKTVSACAFISSLY 799 (1404)
Q Consensus 775 ~~~ILADEMGLGKTiqaIa~L~~L~ 799 (1404)
.+.+|..+.|.|||..+-++...+.
T Consensus 39 ~~~ll~G~~G~GKT~l~~~l~~~~~ 63 (226)
T 2chg_A 39 PHLLFSGPPGTGKTATAIALARDLF 63 (226)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHh
Confidence 4589999999999998887776654
No 229
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=88.63 E-value=2.6 Score=47.90 Aligned_cols=37 Identities=14% Similarity=0.024 Sum_probs=27.0
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEeC
Q 042857 774 SKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVP 813 (1404)
Q Consensus 774 ~~~~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP 813 (1404)
+.+.+|..+.|+|||..+-++...+... ..+++.+-.
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~~~~~~---~~~~~~i~~ 73 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGNEAKKR---GYRVIYSSA 73 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHHHHHHT---TCCEEEEEH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHC---CCEEEEEEH
Confidence 4678999999999999888877766533 345555543
No 230
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=88.18 E-value=0.84 Score=48.65 Aligned_cols=38 Identities=16% Similarity=0.075 Sum_probs=26.9
Q ss_pred HHHHHHHHhhc--cCCcEEEEcCCCchHHHHHHHHHHHHH
Q 042857 762 EALNWLRKCWH--KSKNVILADEMGLGKTVSACAFISSLY 799 (1404)
Q Consensus 762 egVnwL~~~~~--~~~~~ILADEMGLGKTiqaIa~L~~L~ 799 (1404)
..+..+..... .+.+.+|..+.|.|||..+-++...+.
T Consensus 38 ~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~la~~l~~~~~ 77 (242)
T 3bos_A 38 ELIGALKSAASGDGVQAIYLWGPVKSGRTHLIHAACARAN 77 (242)
T ss_dssp HHHHHHHHHHHTCSCSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 34444443332 467889999999999998887776654
No 231
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=88.11 E-value=2.9 Score=42.42 Aligned_cols=26 Identities=27% Similarity=0.359 Sum_probs=21.8
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHH
Q 042857 774 SKNVILADEMGLGKTVSACAFISSLY 799 (1404)
Q Consensus 774 ~~~~ILADEMGLGKTiqaIa~L~~L~ 799 (1404)
..+.+|..+.|+|||..+-++...+.
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~~~ 68 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIKIV 68 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHH
Confidence 46789999999999998888877664
No 232
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=88.05 E-value=2.2 Score=44.90 Aligned_cols=43 Identities=23% Similarity=0.147 Sum_probs=27.7
Q ss_pred CHHHHHHHHHHHHhhccCCcEEEEcCCCchHHHHHHHHHHHHH
Q 042857 757 FPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLY 799 (1404)
Q Consensus 757 ~pyQlegVnwL~~~~~~~~~~ILADEMGLGKTiqaIa~L~~L~ 799 (1404)
++..++.+...+.........+|..+.|.|||..+-.++..+.
T Consensus 28 ~~~~~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~ 70 (250)
T 1njg_A 28 QEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 70 (250)
T ss_dssp CHHHHHHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4555555544443222223578999999999988877766554
No 233
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=87.34 E-value=1.3 Score=50.57 Aligned_cols=35 Identities=26% Similarity=0.402 Sum_probs=25.5
Q ss_pred HHHHHhhccC--CcEEEEcCCCchHHHHHHHHHHHHH
Q 042857 765 NWLRKCWHKS--KNVILADEMGLGKTVSACAFISSLY 799 (1404)
Q Consensus 765 nwL~~~~~~~--~~~ILADEMGLGKTiqaIa~L~~L~ 799 (1404)
..|......+ .+.+|..+.|.|||..+-++...+.
T Consensus 47 ~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l~ 83 (353)
T 1sxj_D 47 TVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELY 83 (353)
T ss_dssp HHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3344444444 5689999999999998888877764
No 234
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=87.16 E-value=0.11 Score=67.11 Aligned_cols=36 Identities=28% Similarity=0.371 Sum_probs=29.9
Q ss_pred cchhhhhhhccCC------------------CCcceeeeccCCCCCCcccccCC
Q 042857 662 KQPQRVISLRSSK------------------DGTREAFVKWTGLPYDECTWEKL 697 (1404)
Q Consensus 662 ~~~eRii~~r~~~------------------~~~~eylVKW~gL~Y~~~TWE~~ 697 (1404)
..||+|++||... .+..||||||+|.+|-+||||..
T Consensus 38 ~~ve~vl~~r~~~~~~~~~~~~~~~~~~~~~~~~~eylvKWkg~s~~hntWe~~ 91 (800)
T 3mwy_W 38 HGIDIVINHRLKTSLEEGKVLEKTVPDLNNCKENYEFLIKWTDESHLHNTWETY 91 (800)
T ss_dssp CBCSEEEEEECCCC--------CCSCCHHHHHHHCEEEEECSSSCTTSCEEECH
T ss_pred CchhhhccccccccccCCccccccCcCcCCCcCceEEEEEeCCcceeeccccCH
Confidence 4679999998751 35679999999999999999964
No 235
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=87.14 E-value=1.6 Score=48.06 Aligned_cols=36 Identities=19% Similarity=0.237 Sum_probs=26.1
Q ss_pred EEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEeCCC
Q 042857 777 VILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLS 815 (1404)
Q Consensus 777 ~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP~S 815 (1404)
-++...||.|||..+|..+.... .....++|+-|.-
T Consensus 22 ~v~~G~MgsGKTT~lL~~~~r~~---~~g~kvli~kp~~ 57 (234)
T 2orv_A 22 QVILGPMFSGKSTELMRRVRRFQ---IAQYKCLVIKYAK 57 (234)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHH---TTTCCEEEEEETT
T ss_pred EEEECCCCCcHHHHHHHHHHHHH---HCCCeEEEEeecC
Confidence 46788999999988887765543 3345688888753
No 236
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=85.19 E-value=10 Score=38.15 Aligned_cols=27 Identities=26% Similarity=0.354 Sum_probs=22.3
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHHh
Q 042857 774 SKNVILADEMGLGKTVSACAFISSLYC 800 (1404)
Q Consensus 774 ~~~~ILADEMGLGKTiqaIa~L~~L~~ 800 (1404)
..+.+|..+.|.|||..+-+++..+..
T Consensus 43 ~~~~ll~G~~G~GKT~l~~~~~~~~~~ 69 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIVEGLAQRIIN 69 (195)
T ss_dssp SCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 467899999999999988888776643
No 237
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=84.98 E-value=3.1 Score=47.46 Aligned_cols=38 Identities=13% Similarity=0.074 Sum_probs=26.1
Q ss_pred HHHHHHHHHHhhccCC--cEEEEcCCCchHHHHHHHHHHH
Q 042857 760 QLEALNWLRKCWHKSK--NVILADEMGLGKTVSACAFISS 797 (1404)
Q Consensus 760 QlegVnwL~~~~~~~~--~~ILADEMGLGKTiqaIa~L~~ 797 (1404)
|.+.+..|.....++. ..|+..+.|.|||..+.+++..
T Consensus 2 ~~~~~~~L~~~i~~~~~~~~Lf~Gp~G~GKtt~a~~la~~ 41 (305)
T 2gno_A 2 AKDQLETLKRIIEKSEGISILINGEDLSYPREVSLELPEY 41 (305)
T ss_dssp --CHHHHHHHHHHTCSSEEEEEECSSSSHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence 4455555655555444 5789999999999888877653
No 238
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=84.98 E-value=5.4 Score=45.71 Aligned_cols=43 Identities=23% Similarity=0.147 Sum_probs=26.8
Q ss_pred CHHHHHHHHHHHHhhccCCcEEEEcCCCchHHHHHHHHHHHHH
Q 042857 757 FPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLY 799 (1404)
Q Consensus 757 ~pyQlegVnwL~~~~~~~~~~ILADEMGLGKTiqaIa~L~~L~ 799 (1404)
++..+..+...+..-......+|..+.|.|||..+-++...+.
T Consensus 21 ~~~~~~~L~~~l~~~~~~~~~ll~G~~G~GKT~la~~la~~l~ 63 (373)
T 1jr3_A 21 QEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 63 (373)
T ss_dssp CHHHHHHHHHHHHHTCCCSEEEEESCTTSSHHHHHHHHHHHHS
T ss_pred cHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3444444433333211122368999999999998888877664
No 239
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=84.78 E-value=0.85 Score=53.10 Aligned_cols=34 Identities=18% Similarity=0.220 Sum_probs=25.6
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEeC
Q 042857 774 SKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVP 813 (1404)
Q Consensus 774 ~~~~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP 813 (1404)
..+.+|..+.|+|||..+-++...+ ..+++.|-.
T Consensus 84 ~~~iLL~GppGtGKT~la~ala~~~------~~~~~~v~~ 117 (355)
T 2qp9_X 84 TSGILLYGPPGTGKSYLAKAVATEA------NSTFFSVSS 117 (355)
T ss_dssp CCCEEEECSTTSCHHHHHHHHHHHH------TCEEEEEEH
T ss_pred CceEEEECCCCCcHHHHHHHHHHHh------CCCEEEeeH
Confidence 3578999999999999988877665 235655543
No 240
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=84.59 E-value=5 Score=44.92 Aligned_cols=24 Identities=33% Similarity=0.595 Sum_probs=20.7
Q ss_pred cEEEEcCCCchHHHHHHHHHHHHH
Q 042857 776 NVILADEMGLGKTVSACAFISSLY 799 (1404)
Q Consensus 776 ~~ILADEMGLGKTiqaIa~L~~L~ 799 (1404)
+.+|..+.|.|||..+-++...+.
T Consensus 48 ~~ll~G~~G~GKT~la~~l~~~l~ 71 (327)
T 1iqp_A 48 HLLFAGPPGVGKTTAALALARELF 71 (327)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHHHhc
Confidence 689999999999999888877664
No 241
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=84.53 E-value=0.99 Score=51.59 Aligned_cols=36 Identities=17% Similarity=0.194 Sum_probs=26.1
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEeCCC
Q 042857 774 SKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLS 815 (1404)
Q Consensus 774 ~~~~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP~S 815 (1404)
..+.+|..+.|+|||..+-++...+ ..+++.|....
T Consensus 51 ~~~vLl~GppGtGKT~la~aia~~~------~~~~~~v~~~~ 86 (322)
T 3eie_A 51 TSGILLYGPPGTGKSYLAKAVATEA------NSTFFSVSSSD 86 (322)
T ss_dssp CCEEEEECSSSSCHHHHHHHHHHHH------TCEEEEEEHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHH------CCCEEEEchHH
Confidence 4578999999999999888776553 34566655433
No 242
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=84.24 E-value=0.88 Score=50.52 Aligned_cols=39 Identities=23% Similarity=0.239 Sum_probs=27.5
Q ss_pred ccCCcEEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEeCCCC
Q 042857 772 HKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLST 816 (1404)
Q Consensus 772 ~~~~~~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP~Sl 816 (1404)
....+.+|..+.|+|||..+-++...+ ..+++.+....+
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~~la~~~------~~~~~~v~~~~~ 87 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAKAVATET------NATFIRVVGSEL 87 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHHHHHHHT------TCEEEEEEGGGG
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHh------CCCEEEEehHHH
Confidence 356788999999999998887775543 346666554433
No 243
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=84.10 E-value=2.7 Score=48.41 Aligned_cols=44 Identities=14% Similarity=0.061 Sum_probs=30.2
Q ss_pred CHHHHHHHHHHHHhhcc---CCcEEEEcCCCchHHHHHHHHHHHHHh
Q 042857 757 FPHQLEALNWLRKCWHK---SKNVILADEMGLGKTVSACAFISSLYC 800 (1404)
Q Consensus 757 ~pyQlegVnwL~~~~~~---~~~~ILADEMGLGKTiqaIa~L~~L~~ 800 (1404)
+..+++.+..++..+.. ....+|..+.|+|||..+-+++..+..
T Consensus 25 r~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~ 71 (384)
T 2qby_B 25 REDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEE 71 (384)
T ss_dssp CHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHH
Confidence 46666666544443322 346889999999999998888776643
No 244
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=83.48 E-value=1.1 Score=44.95 Aligned_cols=45 Identities=16% Similarity=-0.030 Sum_probs=28.3
Q ss_pred HHHHhhccCCcEEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEeC
Q 042857 766 WLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVP 813 (1404)
Q Consensus 766 wL~~~~~~~~~~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP 813 (1404)
.+......+.+++|..+.|+|||..+-++.... .....|++|-|.
T Consensus 16 ~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~~---~~~~~~~v~~~~ 60 (145)
T 3n70_A 16 RLQQLSETDIAVWLYGAPGTGRMTGARYLHQFG---RNAQGEFVYREL 60 (145)
T ss_dssp HHHHHTTCCSCEEEESSTTSSHHHHHHHHHHSS---TTTTSCCEEEEC
T ss_pred HHHHHhCCCCCEEEECCCCCCHHHHHHHHHHhC---CccCCCEEEECC
Confidence 333333567789999999999998876654322 122456664443
No 245
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=83.46 E-value=2.2 Score=49.09 Aligned_cols=54 Identities=19% Similarity=0.182 Sum_probs=38.1
Q ss_pred CHHHHHHHHHHHHhhccC----CcEEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEeCC
Q 042857 757 FPHQLEALNWLRKCWHKS----KNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPL 814 (1404)
Q Consensus 757 ~pyQlegVnwL~~~~~~~----~~~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP~ 814 (1404)
.+.+.+.+..+...+..+ .+.+|..+.|+|||..+-++...+. ...|++.+...
T Consensus 49 ~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~----~~~~~~~~~~~ 106 (368)
T 3uk6_A 49 QLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALG----PDTPFTAIAGS 106 (368)
T ss_dssp CHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHHC----SSCCEEEEEGG
T ss_pred hHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHhc----ccCCcccccch
Confidence 567777777776655543 4689999999999999888877652 23466665543
No 246
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=83.22 E-value=3.2 Score=45.12 Aligned_cols=37 Identities=27% Similarity=0.345 Sum_probs=26.6
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEeCCCC
Q 042857 774 SKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLST 816 (1404)
Q Consensus 774 ~~~~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP~Sl 816 (1404)
..+.+|..+.|+|||..+-++...+ ..|++.+....+
T Consensus 39 ~~~vll~G~~GtGKT~la~~la~~~------~~~~~~~~~~~~ 75 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLAKAVATEA------QVPFLAMAGAEF 75 (262)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHHH------TCCEEEEETTTT
T ss_pred CceEEEECCCCCCHHHHHHHHHHHh------CCCEEEechHHH
Confidence 4568899999999999887776544 246666655443
No 247
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=82.58 E-value=8.2 Score=39.60 Aligned_cols=43 Identities=28% Similarity=0.295 Sum_probs=33.2
Q ss_pred CHHHHHHHHHHHHhh-----ccCCcEEEEcCCCchHHHHHHHHHHHHH
Q 042857 757 FPHQLEALNWLRKCW-----HKSKNVILADEMGLGKTVSACAFISSLY 799 (1404)
Q Consensus 757 ~pyQlegVnwL~~~~-----~~~~~~ILADEMGLGKTiqaIa~L~~L~ 799 (1404)
.+.|.+++..+.... ..+.+.+|..+.|.|||..+-+++..+.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~ 63 (180)
T 3ec2_A 16 NVSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIY 63 (180)
T ss_dssp SHHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 467888888876544 2467788999999999998887777664
No 248
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=81.74 E-value=1.2 Score=47.83 Aligned_cols=23 Identities=17% Similarity=0.323 Sum_probs=18.5
Q ss_pred cEEEEcCCCchHHHHHHHHHHHH
Q 042857 776 NVILADEMGLGKTVSACAFISSL 798 (1404)
Q Consensus 776 ~~ILADEMGLGKTiqaIa~L~~L 798 (1404)
-.++....|.|||..++..+..+
T Consensus 7 i~l~tG~pGsGKT~~a~~~~~~~ 29 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKMVSMMAND 29 (199)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEEEeCCCCCHHHHHHHHHHHH
Confidence 45788899999999988876554
No 249
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=81.58 E-value=3.5 Score=46.09 Aligned_cols=24 Identities=29% Similarity=0.484 Sum_probs=20.6
Q ss_pred cEEEEcCCCchHHHHHHHHHHHHH
Q 042857 776 NVILADEMGLGKTVSACAFISSLY 799 (1404)
Q Consensus 776 ~~ILADEMGLGKTiqaIa~L~~L~ 799 (1404)
+.+|..+.|.|||..+-++...+.
T Consensus 44 ~~ll~G~~G~GKt~la~~l~~~l~ 67 (323)
T 1sxj_B 44 HMIISGMPGIGKTTSVHCLAHELL 67 (323)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHHHhc
Confidence 489999999999998888877664
No 250
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=81.57 E-value=6.2 Score=42.32 Aligned_cols=35 Identities=17% Similarity=0.229 Sum_probs=24.8
Q ss_pred EEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEeCC
Q 042857 777 VILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPL 814 (1404)
Q Consensus 777 ~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP~ 814 (1404)
.++...||+|||...+-.+...... ...++++.|.
T Consensus 23 ~fiyG~MgsGKTt~Ll~~i~n~~~~---~~kvl~~kp~ 57 (195)
T 1w4r_A 23 QVILGPMFSGKSTELMRRVRRFQIA---QYKCLVIKYA 57 (195)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHHT---TCCEEEEEET
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHc---CCeEEEEccc
Confidence 4678899999997666666554332 3468888875
No 251
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=81.46 E-value=5.1 Score=43.98 Aligned_cols=47 Identities=21% Similarity=0.153 Sum_probs=29.6
Q ss_pred HHHHHHhhccCCcEEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEeC
Q 042857 764 LNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVP 813 (1404)
Q Consensus 764 VnwL~~~~~~~~~~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP 813 (1404)
+..+......+.+.+|..+.|+|||..+-++...+. ....|++.|-.
T Consensus 19 ~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~~~---~~~~~~~~v~~ 65 (265)
T 2bjv_A 19 LEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSS---RWQGPFISLNC 65 (265)
T ss_dssp HHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHTST---TTTSCEEEEEG
T ss_pred HHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhcC---ccCCCeEEEec
Confidence 334444445568899999999999987766554321 22346655543
No 252
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=81.06 E-value=3.9 Score=45.45 Aligned_cols=26 Identities=27% Similarity=0.373 Sum_probs=21.4
Q ss_pred cCCcEEEEcCCCchHHHHHHHHHHHH
Q 042857 773 KSKNVILADEMGLGKTVSACAFISSL 798 (1404)
Q Consensus 773 ~~~~~ILADEMGLGKTiqaIa~L~~L 798 (1404)
...+.+|..+.|+|||..+-++...+
T Consensus 49 ~~~~vll~G~~GtGKT~la~~la~~l 74 (310)
T 1ofh_A 49 TPKNILMIGPTGVGKTEIARRLAKLA 74 (310)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHh
Confidence 35789999999999998887776654
No 253
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=80.97 E-value=5.6 Score=47.64 Aligned_cols=27 Identities=19% Similarity=0.155 Sum_probs=21.8
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHHh
Q 042857 774 SKNVILADEMGLGKTVSACAFISSLYC 800 (1404)
Q Consensus 774 ~~~~ILADEMGLGKTiqaIa~L~~L~~ 800 (1404)
..+.+|..+.|+|||..+-++...+..
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~~ 156 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQ 156 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 457899999999999988777766543
No 254
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=80.87 E-value=3.5 Score=47.20 Aligned_cols=44 Identities=25% Similarity=0.170 Sum_probs=29.5
Q ss_pred CHHHHHHHHHHHHhh---ccCCcEEEEcCCCchHHHHHHHHHHHHHh
Q 042857 757 FPHQLEALNWLRKCW---HKSKNVILADEMGLGKTVSACAFISSLYC 800 (1404)
Q Consensus 757 ~pyQlegVnwL~~~~---~~~~~~ILADEMGLGKTiqaIa~L~~L~~ 800 (1404)
++.+++.+..++..+ ..+.+.+|..+.|+|||..+-.++..+..
T Consensus 24 r~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~ 70 (387)
T 2v1u_A 24 REAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEA 70 (387)
T ss_dssp CHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHH
Confidence 455555554333222 34567899999999999988887776643
No 255
>3kup_A Chromobox protein homolog 3; chromo shadow domain, structural genomics consortium, SGC, acetylation, chromatin regulator, nucleus, phosphoprotein; 1.77A {Homo sapiens} SCOP: b.34.13.2 PDB: 1dz1_A
Probab=80.11 E-value=1 Score=39.91 Aligned_cols=38 Identities=11% Similarity=0.251 Sum_probs=30.1
Q ss_pred CCceeEEEEEEecCccccccccCCHHHHHHHHHHHHHHHH
Q 042857 607 GKAVSYEFLVKWVGKSNIHNSWIPESQLKVLAKRKLENYK 646 (1404)
Q Consensus 607 ~~~~~~eylVKw~~~Sy~h~~Wv~e~~l~~~~~~~l~~~~ 646 (1404)
...++..|||||+|.+- ..||+..++....+..+..|-
T Consensus 23 ~~~Gel~fLvKWKg~~~--~d~Vpa~e~n~~~PqlVI~fY 60 (65)
T 3kup_A 23 DSSGELMFLMKWKDSDE--ADLVLAKEANMKCPQIVIAFY 60 (65)
T ss_dssp CTTSSCEEEEEETTCSC--CEEEEHHHHHHHCHHHHHHHH
T ss_pred cCCCcEEEEEEECCCCh--hheEEHHHHHhhChHHHHHHH
Confidence 34557899999999885 449999999988888776653
No 256
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=79.49 E-value=1.7 Score=49.91 Aligned_cols=39 Identities=15% Similarity=0.168 Sum_probs=28.1
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEeCCCCh
Q 042857 774 SKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLSTM 817 (1404)
Q Consensus 774 ~~~~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP~Sll 817 (1404)
..+.+|..+.|+|||..+-++...+ ...+++.|....++
T Consensus 45 ~~~iLL~GppGtGKT~la~ala~~~-----~~~~~~~i~~~~l~ 83 (322)
T 1xwi_A 45 WRGILLFGPPGTGKSYLAKAVATEA-----NNSTFFSISSSDLV 83 (322)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHHT-----TSCEEEEEECCSSC
T ss_pred CceEEEECCCCccHHHHHHHHHHHc-----CCCcEEEEEhHHHH
Confidence 3678999999999999888777654 13366666555444
No 257
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=79.19 E-value=3.7 Score=48.78 Aligned_cols=45 Identities=24% Similarity=0.282 Sum_probs=35.6
Q ss_pred cCCcEEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEeCCCChHHHHHH
Q 042857 773 KSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLSTMPNWLAE 823 (1404)
Q Consensus 773 ~~~~~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP~Sll~nW~rE 823 (1404)
..+|++|....|+|||+.|-+++..+ ..||+.|....++..|.-|
T Consensus 181 ~prGvLL~GPPGTGKTllAkAiA~e~------~~~f~~v~~s~l~sk~vGe 225 (405)
T 4b4t_J 181 QPKGVILYGPPGTGKTLLARAVAHHT------DCKFIRVSGAELVQKYIGE 225 (405)
T ss_dssp CCCCEEEESCSSSSHHHHHHHHHHHH------TCEEEEEEGGGGSCSSTTH
T ss_pred CCCceEEeCCCCCCHHHHHHHHHHhh------CCCceEEEhHHhhccccch
Confidence 35789999999999999988887654 3478888888777776544
No 258
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=79.18 E-value=2.3 Score=51.04 Aligned_cols=42 Identities=17% Similarity=0.278 Sum_probs=26.9
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEeCCCChHHH
Q 042857 774 SKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLSTMPNW 820 (1404)
Q Consensus 774 ~~~~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP~Sll~nW 820 (1404)
..+.+|..+.|+|||..+-++...+ ...+++.|....++..|
T Consensus 167 ~~~vLL~GppGtGKT~lA~aia~~~-----~~~~~~~v~~~~l~~~~ 208 (444)
T 2zan_A 167 WRGILLFGPPGTGKSYLAKAVATEA-----NNSTFFSISSSDLVSKW 208 (444)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHC-----CSSEEEEECCC------
T ss_pred CceEEEECCCCCCHHHHHHHHHHHc-----CCCCEEEEeHHHHHhhh
Confidence 4678999999999999888777654 13466666665554444
No 259
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=78.86 E-value=2.4 Score=49.79 Aligned_cols=41 Identities=20% Similarity=0.236 Sum_probs=28.0
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEeCCCChHHH
Q 042857 774 SKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLSTMPNW 820 (1404)
Q Consensus 774 ~~~~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP~Sll~nW 820 (1404)
..+.+|..+.|+|||..+-++...+ ..+++.|.+..+...|
T Consensus 148 ~~~vLL~GppGtGKT~la~aia~~~------~~~~~~v~~~~l~~~~ 188 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAKAVAAES------NATFFNISAASLTSKY 188 (389)
T ss_dssp CSEEEEESSTTSCHHHHHHHHHHHT------TCEEEEECSCCC----
T ss_pred CceEEEECCCCCCHHHHHHHHHHhh------cCcEEEeeHHHhhccc
Confidence 4688999999999999887775432 3577777666665544
No 260
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=78.20 E-value=14 Score=42.43 Aligned_cols=42 Identities=26% Similarity=0.312 Sum_probs=27.9
Q ss_pred CHHHHHHHHHHHHhh---ccCC--cEEEEcCCCchHHHHHHHHHHHH
Q 042857 757 FPHQLEALNWLRKCW---HKSK--NVILADEMGLGKTVSACAFISSL 798 (1404)
Q Consensus 757 ~pyQlegVnwL~~~~---~~~~--~~ILADEMGLGKTiqaIa~L~~L 798 (1404)
++.+++.+...+..+ ..+. ..+|..+.|.|||..+-+++..+
T Consensus 22 r~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~ 68 (389)
T 1fnn_A 22 REQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELY 68 (389)
T ss_dssp CHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 455655554444333 1224 68899999999999887776655
No 261
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=77.93 E-value=4.2 Score=44.39 Aligned_cols=36 Identities=19% Similarity=0.094 Sum_probs=24.4
Q ss_pred EEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEeCCC
Q 042857 777 VILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLS 815 (1404)
Q Consensus 777 ~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP~S 815 (1404)
-++..+||.|||...+-.+..+. .....++|+.|.-
T Consensus 31 ~vitG~M~sGKTT~Llr~~~r~~---~~g~kvli~kp~~ 66 (219)
T 3e2i_A 31 ECITGSMFSGKSEELIRRLRRGI---YAKQKVVVFKPAI 66 (219)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHH---HTTCCEEEEEEC-
T ss_pred EEEECCCCCCHHHHHHHHHHHHH---HcCCceEEEEecc
Confidence 46788999999987776654433 2234688888843
No 262
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=76.90 E-value=25 Score=42.84 Aligned_cols=36 Identities=22% Similarity=0.229 Sum_probs=25.7
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEeCCCC
Q 042857 775 KNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLST 816 (1404)
Q Consensus 775 ~~~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP~Sl 816 (1404)
...+|..+.|+|||..+-++...+ ..+++.+-....
T Consensus 78 ~~lLL~GppGtGKTtla~~la~~l------~~~~i~in~s~~ 113 (516)
T 1sxj_A 78 RAAMLYGPPGIGKTTAAHLVAQEL------GYDILEQNASDV 113 (516)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHT------TCEEEEECTTSC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc------CCCEEEEeCCCc
Confidence 578999999999999888776654 235555544433
No 263
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=76.83 E-value=6.3 Score=44.98 Aligned_cols=44 Identities=20% Similarity=0.181 Sum_probs=28.8
Q ss_pred CHHHHHHHHHHHHhh---ccCCcEEEEcCCCchHHHHHHHHHHHHHh
Q 042857 757 FPHQLEALNWLRKCW---HKSKNVILADEMGLGKTVSACAFISSLYC 800 (1404)
Q Consensus 757 ~pyQlegVnwL~~~~---~~~~~~ILADEMGLGKTiqaIa~L~~L~~ 800 (1404)
+..+++.+..++..+ ..+...+|..+.|.|||..+-.++..+..
T Consensus 25 r~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~ 71 (386)
T 2qby_A 25 REDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHK 71 (386)
T ss_dssp CHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 455555554333321 22467899999999999988777766543
No 264
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=75.58 E-value=1.7 Score=48.61 Aligned_cols=24 Identities=29% Similarity=0.551 Sum_probs=20.7
Q ss_pred cEEEEcCCCchHHHHHHHHHHHHH
Q 042857 776 NVILADEMGLGKTVSACAFISSLY 799 (1404)
Q Consensus 776 ~~ILADEMGLGKTiqaIa~L~~L~ 799 (1404)
+.+|..+.|.|||..+-++...+.
T Consensus 40 ~~ll~G~~G~GKt~la~~l~~~l~ 63 (319)
T 2chq_A 40 HLLFSGPPGTGKTATAIALARDLF 63 (319)
T ss_dssp CEEEESSSSSSHHHHHHHHHHHHH
T ss_pred eEEEECcCCcCHHHHHHHHHHHhc
Confidence 589999999999998888877664
No 265
>3i3c_A Chromobox protein homolog 5; CBX5, chromo shadow domain, structural genomics, structural consortium, SGC, centromere, nucleus, phosphoprotein; 2.48A {Homo sapiens} SCOP: b.34.13.2
Probab=75.04 E-value=1.6 Score=39.71 Aligned_cols=37 Identities=14% Similarity=0.285 Sum_probs=28.4
Q ss_pred CCceeEEEEEEecCccccccccCCHHHHHHHHHHHHHHH
Q 042857 607 GKAVSYEFLVKWVGKSNIHNSWIPESQLKVLAKRKLENY 645 (1404)
Q Consensus 607 ~~~~~~eylVKw~~~Sy~h~~Wv~e~~l~~~~~~~l~~~ 645 (1404)
...++..|||||+|.+-.. ||+..++....+..+..|
T Consensus 33 ~~~Gel~fLVKWKg~~e~d--lVpa~ean~k~PqlVI~F 69 (75)
T 3i3c_A 33 DSCGDLMFLMKWKDTDEAD--LVLAKEANVKCPQIVIAF 69 (75)
T ss_dssp C---CCEEEEEETTSSCEE--EEEHHHHHHHCHHHHHHH
T ss_pred ccCCcEEEEEEECCCChhc--eEEHHHHhhhChHHHHHH
Confidence 4456789999999988754 999999988888877665
No 266
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=74.92 E-value=9.2 Score=40.13 Aligned_cols=54 Identities=11% Similarity=-0.071 Sum_probs=35.5
Q ss_pred HHHHHHH-hhccCCcEEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEeCCC--ChHHHHH
Q 042857 763 ALNWLRK-CWHKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLS--TMPNWLA 822 (1404)
Q Consensus 763 gVnwL~~-~~~~~~~~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP~S--ll~nW~r 822 (1404)
++..++. .+..+.-.+|+.+.|.|||..+..++. . ..++++++.-.. ....|.+
T Consensus 8 ~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~---~---~~~~v~~i~~~~~~~~~~~~~ 64 (220)
T 2cvh_A 8 SLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL---L---SGKKVAYVDTEGGFSPERLVQ 64 (220)
T ss_dssp HHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH---H---HCSEEEEEESSCCCCHHHHHH
T ss_pred HHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH---H---cCCcEEEEECCCCCCHHHHHH
Confidence 4555553 455566788999999999988877766 1 234677776544 3344544
No 267
>2fmm_A Chromobox protein homolog 1; ENT domain, chromo shadow domain, EMSY protein, heterochroma protein 1, transcription; 1.80A {Homo sapiens} SCOP: b.34.13.2 PDB: 1s4z_A
Probab=74.71 E-value=1.9 Score=39.22 Aligned_cols=37 Identities=16% Similarity=0.379 Sum_probs=30.5
Q ss_pred CceeEEEEEEecCccccccccCCHHHHHHHHHHHHHHHH
Q 042857 608 KAVSYEFLVKWVGKSNIHNSWIPESQLKVLAKRKLENYK 646 (1404)
Q Consensus 608 ~~~~~eylVKw~~~Sy~h~~Wv~e~~l~~~~~~~l~~~~ 646 (1404)
..++..|||||+|..- ..||+..++....+.++..|-
T Consensus 27 ~~Gel~fLvkWkg~d~--~dlVpa~~a~~k~Pq~VI~FY 63 (74)
T 2fmm_A 27 SSGELMFLMKWKNSDE--ADLVPAKEANVKCPQVVISFY 63 (74)
T ss_dssp ETTEEEEEEEETTCSC--CEEEEHHHHHHHCHHHHHHHH
T ss_pred CCCcEEEEEEECCCCc--ccEEEHHHHhhhChHHHHHHH
Confidence 4567899999999765 679999999988888776664
No 268
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=74.50 E-value=4.3 Score=47.12 Aligned_cols=39 Identities=21% Similarity=0.197 Sum_probs=27.6
Q ss_pred cCCcEEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEeCCCCh
Q 042857 773 KSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLSTM 817 (1404)
Q Consensus 773 ~~~~~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP~Sll 817 (1404)
...+.+|..+.|+|||..+-++...+ ..+++.|....++
T Consensus 116 ~~~~vLl~GppGtGKT~la~aia~~~------~~~~~~i~~~~l~ 154 (357)
T 3d8b_A 116 PPKGILLFGPPGTGKTLIGKCIASQS------GATFFSISASSLT 154 (357)
T ss_dssp CCSEEEEESSTTSSHHHHHHHHHHHT------TCEEEEEEGGGGC
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHc------CCeEEEEehHHhh
Confidence 35678999999999999887776543 3466666554443
No 269
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=71.42 E-value=13 Score=47.88 Aligned_cols=99 Identities=11% Similarity=0.114 Sum_probs=69.9
Q ss_pred hhhHHHHHHHHHHHHHHcCCeEEEEecchhHHHHHHHHHhhhcC--CceEEEEeCCCCHHHHHHHHHHHhcCCCceEEEe
Q 042857 1069 ASAKLTLLHSMLKVLYKEGHRVLIFSQMTKLLDILEDYLNIEFG--PKTYERVDGSVSVGDRQAAITRFNQDKSRFVFLL 1146 (1404)
Q Consensus 1069 ~SgKl~~L~kLL~kl~~~G~KVLIFSq~~~~LDiLed~L~~~f~--g~~y~rLdGs~s~~eRq~~Id~Fn~~~s~~VfLL 1146 (1404)
.|||.....-.+......|.++||.++......-+.+.+...+. ++.+..++|+++..+|...+..+..+... +++
T Consensus 399 GSGKTlvall~il~~l~~g~qvlvlaPtr~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~--IvV 476 (780)
T 1gm5_A 399 GSGKTVVAQLAILDNYEAGFQTAFMVPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQID--VVI 476 (780)
T ss_dssp SSSHHHHHHHHHHHHHHHTSCEEEECSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCC--EEE
T ss_pred CCCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCC--EEE
Confidence 47887666555555556789999999998776666555554433 68899999999999999999988765444 445
Q ss_pred eccc-ccccccccCCCEEEEEcCC
Q 042857 1147 STRS-CGLGINLATADTVIIYDSD 1169 (1404)
Q Consensus 1147 STrA-gG~GINL~~AdtVIi~Dsd 1169 (1404)
+|.+ ....+++...+.||+=+.+
T Consensus 477 gT~~ll~~~~~~~~l~lVVIDEaH 500 (780)
T 1gm5_A 477 GTHALIQEDVHFKNLGLVIIDEQH 500 (780)
T ss_dssp ECTTHHHHCCCCSCCCEEEEESCC
T ss_pred ECHHHHhhhhhccCCceEEecccc
Confidence 5543 3445677777777765554
No 270
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=70.90 E-value=4.4 Score=45.67 Aligned_cols=34 Identities=9% Similarity=0.061 Sum_probs=25.2
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEeCC
Q 042857 775 KNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPL 814 (1404)
Q Consensus 775 ~~~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP~ 814 (1404)
.+++|..+.|+|||..+-++...+ ..+++.|...
T Consensus 37 ~~lLl~GppGtGKT~la~aiA~~l------~~~~i~v~~~ 70 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQCELVFRKM------GINPIMMSAG 70 (293)
T ss_dssp SEEEEEECTTSCHHHHHHHHHHHH------TCCCEEEEHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh------CCCEEEEeHH
Confidence 567888999999999988877665 2356655543
No 271
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=70.37 E-value=12 Score=45.02 Aligned_cols=24 Identities=29% Similarity=0.232 Sum_probs=19.2
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHH
Q 042857 775 KNVILADEMGLGKTVSACAFISSL 798 (1404)
Q Consensus 775 ~~~ILADEMGLGKTiqaIa~L~~L 798 (1404)
.+.||..+.|+|||..+-++...+
T Consensus 51 ~~vLL~GppGtGKTtlAr~ia~~~ 74 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLAEVIARYA 74 (447)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHT
T ss_pred cEEEEECCCCCcHHHHHHHHHHHh
Confidence 468999999999998877665543
No 272
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=70.02 E-value=4.5 Score=50.99 Aligned_cols=78 Identities=15% Similarity=0.108 Sum_probs=55.3
Q ss_pred CCCHHHHHHHHHHHHhhccCCcEEEEcCCCchHHHHHHHHHHHHHhhcc-CCCcEEEEeCCCCh-HHHHHHHHHHCC---
Q 042857 755 ALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFK-AKLPCLVLVPLSTM-PNWLAEFALWAP--- 829 (1404)
Q Consensus 755 ~L~pyQlegVnwL~~~~~~~~~~ILADEMGLGKTiqaIa~L~~L~~~~~-~~gP~LIVvP~Sll-~nW~rEf~kw~P--- 829 (1404)
.|.|.|.++|.. ..+..++....|.|||.+.+.-+.+++...+ ....+|+|+.+... ......+....+
T Consensus 2 ~L~~~Q~~av~~------~~~~~lV~AgaGSGKT~~l~~ri~~ll~~~~~~~~~IL~lTfT~~Aa~em~~Rl~~~l~~~~ 75 (673)
T 1uaa_A 2 RLNPGQQQAVEF------VTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVGQTLGRKE 75 (673)
T ss_dssp CCCHHHHHHHHC------CSSEEEECCCTTSCHHHHHHHHHHHHHHHHCCCGGGEEEEESSHHHHHHHHHHHHHHSCTTT
T ss_pred CCCHHHHHHHhC------CCCCEEEEeCCCCChHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHcCccc
Confidence 488999999863 2567778889999999999988888886633 34569999987655 445555666543
Q ss_pred --CCcEEEEec
Q 042857 830 --NLNVVEYHG 838 (1404)
Q Consensus 830 --~l~Vvvy~G 838 (1404)
.+.|..+|+
T Consensus 76 ~~~~~v~Tfhs 86 (673)
T 1uaa_A 76 ARGLMISTFHT 86 (673)
T ss_dssp TTTSEEEEHHH
T ss_pred ccCCEEEeHHH
Confidence 244555554
No 273
>3q6s_A Chromobox protein homolog 1; incenp, heterochromatin, centromere, cell cycle; 1.93A {Homo sapiens} SCOP: b.34.13.2
Probab=69.40 E-value=2.7 Score=38.52 Aligned_cols=38 Identities=16% Similarity=0.365 Sum_probs=30.0
Q ss_pred CCceeEEEEEEecCccccccccCCHHHHHHHHHHHHHHHH
Q 042857 607 GKAVSYEFLVKWVGKSNIHNSWIPESQLKVLAKRKLENYK 646 (1404)
Q Consensus 607 ~~~~~~eylVKw~~~Sy~h~~Wv~e~~l~~~~~~~l~~~~ 646 (1404)
...++..|||||+|.+-.. ||+..++....+.++..|-
T Consensus 20 ~~~Gel~fLvKWKg~~~~d--lVpa~ean~k~PqlVI~FY 57 (78)
T 3q6s_A 20 DSSGELMFLMKWKNSDEAD--LVPAKEANVKCPQVVISFY 57 (78)
T ss_dssp CTTSSCEEEEEETTCSCEE--EEEHHHHHHHSHHHHHHHH
T ss_pred cCCCcEEEEEEECCCChhh--eEeHHHHHhhChHHHHHHH
Confidence 3455689999999998644 9999999888888776653
No 274
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=68.90 E-value=4.3 Score=49.44 Aligned_cols=35 Identities=20% Similarity=0.242 Sum_probs=25.4
Q ss_pred ccCCcEEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEe
Q 042857 772 HKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLV 812 (1404)
Q Consensus 772 ~~~~~~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVv 812 (1404)
....+.+|..+.|+|||..+-++...+ ..||+.|-
T Consensus 236 ~~~~~vLL~GppGtGKT~lAraia~~~------~~~fv~vn 270 (489)
T 3hu3_A 236 KPPRGILLYGPPGTGKTLIARAVANET------GAFFFLIN 270 (489)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHHC------SSEEEEEE
T ss_pred CCCCcEEEECcCCCCHHHHHHHHHHHh------CCCEEEEE
Confidence 345678999999999999887765432 34666554
No 275
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=68.86 E-value=13 Score=42.38 Aligned_cols=39 Identities=26% Similarity=0.397 Sum_probs=27.0
Q ss_pred HHHHHHHHHhhccCC--cEEEEcCCCchHHHHHHHHHHHHH
Q 042857 761 LEALNWLRKCWHKSK--NVILADEMGLGKTVSACAFISSLY 799 (1404)
Q Consensus 761 legVnwL~~~~~~~~--~~ILADEMGLGKTiqaIa~L~~L~ 799 (1404)
.+.+..|......+. +.+|..+.|.|||..+-++...+.
T Consensus 31 ~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~ 71 (340)
T 1sxj_C 31 NEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIY 71 (340)
T ss_dssp HHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHc
Confidence 334444444444443 389999999999999988887764
No 276
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=68.79 E-value=10 Score=47.15 Aligned_cols=59 Identities=22% Similarity=0.298 Sum_probs=36.9
Q ss_pred HHHHHHHHHhhccCCcEEEEcCCCchHHHHHHHHHHHHHhhc-----------cCCCcEEEEeCCCChHH
Q 042857 761 LEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEF-----------KAKLPCLVLVPLSTMPN 819 (1404)
Q Consensus 761 legVnwL~~~~~~~~~~ILADEMGLGKTiqaIa~L~~L~~~~-----------~~~gP~LIVvP~Sll~n 819 (1404)
...+..+......+...+|..+.|+|||..+-++...+.... ....|.+.++|.....+
T Consensus 47 ~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~~~~p~i~~~p~g~~~~ 116 (604)
T 3k1j_A 47 EHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPEDENMPRIKTVPACQGRR 116 (604)
T ss_dssp HHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTCTTSCEEEEEETTHHHH
T ss_pred hhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCcccccCCcEEEEecchHHH
Confidence 334444444555788999999999999988877665442111 11246666777655443
No 277
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=67.58 E-value=41 Score=38.60 Aligned_cols=44 Identities=7% Similarity=-0.002 Sum_probs=29.9
Q ss_pred HHHHHHHH-HHHHhh--ccCCcEEEEcCCCchHHHHHHHHHHHHHhh
Q 042857 758 PHQLEALN-WLRKCW--HKSKNVILADEMGLGKTVSACAFISSLYCE 801 (1404)
Q Consensus 758 pyQlegVn-wL~~~~--~~~~~~ILADEMGLGKTiqaIa~L~~L~~~ 801 (1404)
+-|...+. +|.... ..+.+.+|....|+|||.++-.++..+...
T Consensus 26 e~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~ 72 (318)
T 3te6_A 26 VEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITS 72 (318)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 34444444 333333 245678899999999999999988887543
No 278
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=67.50 E-value=6.5 Score=43.77 Aligned_cols=36 Identities=28% Similarity=0.270 Sum_probs=25.5
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEeCCC
Q 042857 774 SKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLS 815 (1404)
Q Consensus 774 ~~~~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP~S 815 (1404)
..+.+|..+.|.|||..+-++...+ ..+++.+....
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la~~~------~~~~~~i~~~~ 89 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVATEC------SATFLNISAAS 89 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHHT------TCEEEEEESTT
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHh------CCCeEEeeHHH
Confidence 5688999999999999887766543 23555554433
No 279
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=66.02 E-value=6.7 Score=44.23 Aligned_cols=36 Identities=25% Similarity=0.251 Sum_probs=25.8
Q ss_pred ccCCcEEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEeC
Q 042857 772 HKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVP 813 (1404)
Q Consensus 772 ~~~~~~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP 813 (1404)
..+.+.+|..+.|+|||..+-++...+ ..+++.|-.
T Consensus 47 ~~~~~vLL~Gp~GtGKT~la~ala~~~------~~~~i~v~~ 82 (301)
T 3cf0_A 47 TPSKGVLFYGPPGCGKTLLAKAIANEC------QANFISIKG 82 (301)
T ss_dssp CCCSEEEEECSSSSSHHHHHHHHHHHT------TCEEEEECH
T ss_pred CCCceEEEECCCCcCHHHHHHHHHHHh------CCCEEEEEh
Confidence 345778999999999999887766543 245655543
No 280
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=65.23 E-value=14 Score=43.18 Aligned_cols=56 Identities=13% Similarity=0.040 Sum_probs=41.6
Q ss_pred HHHHHHH--hhccCCcEEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEeCCCChHHHH
Q 042857 763 ALNWLRK--CWHKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLSTMPNWL 821 (1404)
Q Consensus 763 gVnwL~~--~~~~~~~~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP~Sll~nW~ 821 (1404)
++..++. -+..+.-.+|+.+.|.|||..++.++..+... .+++++|.......+|.
T Consensus 61 ~LD~~Lg~GGl~~G~li~I~G~pGsGKTtlal~la~~~~~~---g~~vlyi~~E~s~~~~~ 118 (366)
T 1xp8_A 61 SLDLALGVGGIPRGRITEIYGPESGGKTTLALAIVAQAQKA---GGTCAFIDAEHALDPVY 118 (366)
T ss_dssp HHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHT---TCCEEEEESSCCCCHHH
T ss_pred HHHHHhCCCCccCCcEEEEEcCCCCChHHHHHHHHHHHHHC---CCeEEEEECCCChhHHH
Confidence 5555554 45566778899999999999999888876532 35788888877776663
No 281
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=64.58 E-value=20 Score=43.39 Aligned_cols=35 Identities=26% Similarity=0.357 Sum_probs=25.2
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEeCC
Q 042857 774 SKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPL 814 (1404)
Q Consensus 774 ~~~~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP~ 814 (1404)
..+.+|..+.|+|||..+-++...+ ..||+.+...
T Consensus 49 p~gvLL~GppGtGKT~Laraia~~~------~~~f~~is~~ 83 (476)
T 2ce7_A 49 PKGILLVGPPGTGKTLLARAVAGEA------NVPFFHISGS 83 (476)
T ss_dssp CSEEEEECCTTSSHHHHHHHHHHHH------TCCEEEEEGG
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHc------CCCeeeCCHH
Confidence 3578999999999999887766543 2466655443
No 282
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=64.57 E-value=16 Score=40.17 Aligned_cols=23 Identities=26% Similarity=0.241 Sum_probs=19.5
Q ss_pred CcEEEEcCCCchHHHHHHHHHHH
Q 042857 775 KNVILADEMGLGKTVSACAFISS 797 (1404)
Q Consensus 775 ~~~ILADEMGLGKTiqaIa~L~~ 797 (1404)
.+.+|..+.|+|||..+-++...
T Consensus 65 ~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 65 VSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHH
Confidence 56889999999999988877665
No 283
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=64.38 E-value=0.91 Score=52.47 Aligned_cols=49 Identities=39% Similarity=0.772 Sum_probs=34.4
Q ss_pred cccccccccC---C-Cc--eEEcC--CCCCcccccccCCCCCCCCCCC-------ccCcccccc
Q 042857 74 YYYECVICDL---G-GN--LLCCD--SCPRTYHLQCLDPPLKRIPNGK-------WQCPKCTQK 122 (1404)
Q Consensus 74 ~~~~C~~C~~---~-g~--ll~Cd--~C~~~~H~~Cl~Ppl~~~P~g~-------W~C~~C~~~ 122 (1404)
....|.+|-. . |. -..|+ .|...||..|+...+.+.+.+. =-||.|+..
T Consensus 307 ~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~p 370 (381)
T 3k1l_B 307 EELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAK 370 (381)
T ss_dssp SCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCE
T ss_pred CCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCc
Confidence 3446999865 2 33 34698 8999999999988765544321 249999875
No 284
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=64.36 E-value=2.9 Score=37.96 Aligned_cols=46 Identities=24% Similarity=0.535 Sum_probs=33.9
Q ss_pred ccccccccCCC-ceEEcCCCCCcccccccCCCCCCCCCCCccCcccccc
Q 042857 75 YYECVICDLGG-NLLCCDSCPRTYHLQCLDPPLKRIPNGKWQCPKCTQK 122 (1404)
Q Consensus 75 ~~~C~~C~~~g-~ll~Cd~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~ 122 (1404)
-..|.+|..-- .-+.|..|...||..|+...+..... =.||.|+..
T Consensus 15 i~~C~IC~~~i~~g~~C~~C~h~fH~~Ci~kWl~~~~~--~~CP~Cr~~ 61 (74)
T 2ct0_A 15 VKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAE--PRCPHCNDY 61 (74)
T ss_dssp SCBCSSSCCBCSSSEECSSSCCEECHHHHHHHSTTCSS--CCCTTTCSC
T ss_pred CCcCcchhhHcccCCccCCCCchhhHHHHHHHHHhcCC--CCCCCCcCc
Confidence 34699998732 23468899999999999987765422 469999865
No 285
>3kup_A Chromobox protein homolog 3; chromo shadow domain, structural genomics consortium, SGC, acetylation, chromatin regulator, nucleus, phosphoprotein; 1.77A {Homo sapiens} SCOP: b.34.13.2 PDB: 1dz1_A
Probab=64.14 E-value=3.1 Score=36.80 Aligned_cols=47 Identities=21% Similarity=0.321 Sum_probs=30.3
Q ss_pred cchhhhhhhccCCCCcceeeeccCCCCCCcccccCCCchHHHhhHHHHHHH
Q 042857 662 KQPQRVISLRSSKDGTREAFVKWTGLPYDECTWEKLDEPALEKYSHLTDLF 712 (1404)
Q Consensus 662 ~~~eRii~~r~~~~~~~eylVKW~gL~Y~~~TWE~~~~~~~~~~~~li~~~ 712 (1404)
+.|++|+... ..+|...|||||+|..--+.+|.. ....++++++-.|
T Consensus 13 le~ekI~g~~-~~~Gel~fLvKWKg~~~~d~Vpa~---e~n~~~PqlVI~f 59 (65)
T 3kup_A 13 LDPERIIGAT-DSSGELMFLMKWKDSDEADLVLAK---EANMKCPQIVIAF 59 (65)
T ss_dssp CCEEEEEEEE-CTTSSCEEEEEETTCSCCEEEEHH---HHHHHCHHHHHHH
T ss_pred CCeeEEeeEE-cCCCcEEEEEEECCCChhheEEHH---HHHhhChHHHHHH
Confidence 5788999865 346888999999986655544432 1223566665444
No 286
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=63.94 E-value=24 Score=44.92 Aligned_cols=27 Identities=30% Similarity=0.410 Sum_probs=22.5
Q ss_pred cCCcEEEEcCCCchHHHHHHHHHHHHH
Q 042857 773 KSKNVILADEMGLGKTVSACAFISSLY 799 (1404)
Q Consensus 773 ~~~~~ILADEMGLGKTiqaIa~L~~L~ 799 (1404)
...+.+|..+.|.|||..+-++...+.
T Consensus 206 ~~~~vlL~G~~GtGKT~la~~la~~l~ 232 (758)
T 1r6b_X 206 RKNNPLLVGESGVGKTAIAEGLAWRIV 232 (758)
T ss_dssp SSCEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCCeEEEcCCCCCHHHHHHHHHHHHH
Confidence 457789999999999998888777654
No 287
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=63.76 E-value=3 Score=34.50 Aligned_cols=43 Identities=28% Similarity=0.636 Sum_probs=31.1
Q ss_pred cccccccCC---Cc-eEEcCCCCCcccccccCCCCCCCCCCCccCcccccc
Q 042857 76 YECVICDLG---GN-LLCCDSCPRTYHLQCLDPPLKRIPNGKWQCPKCTQK 122 (1404)
Q Consensus 76 ~~C~~C~~~---g~-ll~Cd~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~ 122 (1404)
..|.+|... ++ ......|.-.||..|+...+.. ...||.|+..
T Consensus 6 ~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~----~~~CP~Cr~~ 52 (55)
T 1iym_A 6 VECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGS----HSTCPLCRLT 52 (55)
T ss_dssp CCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTT----CCSCSSSCCC
T ss_pred CcCccCCccccCCCceEECCCCCCcccHHHHHHHHHc----CCcCcCCCCE
Confidence 458888764 22 4445579999999999877654 3479999854
No 288
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=63.26 E-value=0.52 Score=40.95 Aligned_cols=47 Identities=23% Similarity=0.448 Sum_probs=31.6
Q ss_pred ccccccccccCCCc---eEEcCCCC---CcccccccCCCCCCCCCCCccCcccccc
Q 042857 73 GYYYECVICDLGGN---LLCCDSCP---RTYHLQCLDPPLKRIPNGKWQCPKCTQK 122 (1404)
Q Consensus 73 ~~~~~C~~C~~~g~---ll~Cd~C~---~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~ 122 (1404)
.....|.+|..+++ ++.| .|. +.||..|+...+.. .+.+.||.|+..
T Consensus 4 ~~~~~CrIC~~~~~~~l~~PC-~C~gs~~~~H~~Cl~~W~~~--~~~~~C~~C~~~ 56 (60)
T 1vyx_A 4 EDVPVCWICNEELGNERFRAC-GCTGELENVHRSCLSTWLTI--SRNTACQICGVV 56 (60)
T ss_dssp CSCCEETTTTEECSCCCCCSC-CCSSGGGSCCHHHHHHHHHH--HTCSBCTTTCCB
T ss_pred CCCCEeEEeecCCCCceecCc-CCCCchhhhHHHHHHHHHHh--CCCCccCCCCCe
Confidence 34457888865432 3334 344 49999999987643 256899999865
No 289
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=61.58 E-value=18 Score=36.47 Aligned_cols=27 Identities=19% Similarity=0.247 Sum_probs=22.0
Q ss_pred cCCcEEEEcCCCchHHHHHHHHHHHHH
Q 042857 773 KSKNVILADEMGLGKTVSACAFISSLY 799 (1404)
Q Consensus 773 ~~~~~ILADEMGLGKTiqaIa~L~~L~ 799 (1404)
.+...+|..+.|.|||..+-++...+.
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~ 61 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQAL 61 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 577888999999999988777766554
No 290
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=60.41 E-value=29 Score=39.33 Aligned_cols=40 Identities=23% Similarity=0.379 Sum_probs=27.3
Q ss_pred HHHHHHHHHHhh-ccC--CcEEEEcCCCchHHHHHHHHHHHHH
Q 042857 760 QLEALNWLRKCW-HKS--KNVILADEMGLGKTVSACAFISSLY 799 (1404)
Q Consensus 760 QlegVnwL~~~~-~~~--~~~ILADEMGLGKTiqaIa~L~~L~ 799 (1404)
|.+.+..+.... ..+ .+.+|..+.|.|||..+-+++..+.
T Consensus 19 ~~~~~~~l~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~la~~l~ 61 (354)
T 1sxj_E 19 NEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIF 61 (354)
T ss_dssp CHHHHHHHHTTTTCTTCCCCEEEECSTTSSHHHHHHTHHHHHS
T ss_pred CHHHHHHHHHHHhhCCCCCeEEEECCCCCCHHHHHHHHHHHHc
Confidence 444555555544 332 3488999999999988877776554
No 291
>4bbq_A Lysine-specific demethylase 2A; oxidoreductase, ubiquitin, ligase, ubiquitination, demethyla ZF-CXXC DNA binding domain, CPG island, chromatin; 2.24A {Homo sapiens}
Probab=59.55 E-value=2 Score=41.96 Aligned_cols=38 Identities=18% Similarity=0.455 Sum_probs=30.7
Q ss_pred cccccccccCCCceEEcCCCCCcccccccCCCCCCCCCCCccCcccccc
Q 042857 74 YYYECVICDLGGNLLCCDSCPRTYHLQCLDPPLKRIPNGKWQCPKCTQK 122 (1404)
Q Consensus 74 ~~~~C~~C~~~g~ll~Cd~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~ 122 (1404)
.+.+|.+|++.. |+.|...||++|+.+| .|.|..|...
T Consensus 6 rC~~C~~C~~~~----C~~C~~c~~~~~~~~~-------~~~~~~c~~~ 43 (117)
T 4bbq_A 6 RCRKCKACVQGE----CGVCHYCRDMKKFGGP-------GRMKQSCVLR 43 (117)
T ss_dssp CCSCSHHHHSCC----CSCSHHHHHSGGGTSC-------CCSCCCCGGG
T ss_pred cCCcCcCcCCcC----CCCCCCCcCCcccCCC-------Cccccchhhe
Confidence 466788898764 9999999999999865 3888888654
No 292
>2fmm_A Chromobox protein homolog 1; ENT domain, chromo shadow domain, EMSY protein, heterochroma protein 1, transcription; 1.80A {Homo sapiens} SCOP: b.34.13.2 PDB: 1s4z_A
Probab=59.51 E-value=2 Score=39.02 Aligned_cols=48 Identities=25% Similarity=0.366 Sum_probs=32.2
Q ss_pred cchhhhhhhccCCCCcceeeeccCCCCCCcccccCCCchHHHhhHHHHHHHH
Q 042857 662 KQPQRVISLRSSKDGTREAFVKWTGLPYDECTWEKLDEPALEKYSHLTDLFV 713 (1404)
Q Consensus 662 ~~~eRii~~r~~~~~~~eylVKW~gL~Y~~~TWE~~~~~~~~~~~~li~~~~ 713 (1404)
+.|++|+.... .+|...|||||+| +++++|....+ ...+++.++-.|.
T Consensus 16 l~~ekI~g~~~-~~Gel~fLvkWkg--~d~~dlVpa~~-a~~k~Pq~VI~FY 63 (74)
T 2fmm_A 16 LEPERIIGATD-SSGELMFLMKWKN--SDEADLVPAKE-ANVKCPQVVISFY 63 (74)
T ss_dssp CCEEEEEEEEE-ETTEEEEEEEETT--CSCCEEEEHHH-HHHHCHHHHHHHH
T ss_pred CCceEEEEEEc-CCCcEEEEEEECC--CCcccEEEHHH-HhhhChHHHHHHH
Confidence 57899998764 3577899999996 55677875332 2235666665553
No 293
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=58.50 E-value=25 Score=45.60 Aligned_cols=27 Identities=26% Similarity=0.337 Sum_probs=22.3
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHHh
Q 042857 774 SKNVILADEMGLGKTVSACAFISSLYC 800 (1404)
Q Consensus 774 ~~~~ILADEMGLGKTiqaIa~L~~L~~ 800 (1404)
..+.+|..+.|.|||..+-++...+..
T Consensus 191 ~~~vlL~G~pG~GKT~la~~la~~l~~ 217 (854)
T 1qvr_A 191 KNNPVLIGEPGVGKTAIVEGLAQRIVK 217 (854)
T ss_dssp CCCCEEEECTTSCHHHHHHHHHHHHHH
T ss_pred CCceEEEcCCCCCHHHHHHHHHHHHhc
Confidence 457899999999999988888776643
No 294
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=58.44 E-value=23 Score=41.07 Aligned_cols=55 Identities=9% Similarity=-0.029 Sum_probs=39.6
Q ss_pred HHHHHHH--hhccCCcEEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEeCCCChHHH
Q 042857 763 ALNWLRK--CWHKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLSTMPNW 820 (1404)
Q Consensus 763 gVnwL~~--~~~~~~~~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP~Sll~nW 820 (1404)
++..++. -+..+.-.+|+.+.|.|||..++.++..+... .++++++.......++
T Consensus 48 ~LD~~Lg~GGl~~G~iv~I~G~pGsGKTtLal~la~~~~~~---g~~vlyi~~E~~~~~~ 104 (349)
T 2zr9_A 48 SLDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQAA---GGIAAFIDAEHALDPE 104 (349)
T ss_dssp HHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHT---TCCEEEEESSCCCCHH
T ss_pred HHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhC---CCeEEEEECCCCcCHH
Confidence 5555554 44556678899999999999999888776532 4578888776665554
No 295
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=57.73 E-value=10 Score=46.99 Aligned_cols=43 Identities=21% Similarity=0.329 Sum_probs=31.7
Q ss_pred cCCcEEEEcCCCchHHHHHHHHHHHHHhhccC-CCcEEEEeCCC
Q 042857 773 KSKNVILADEMGLGKTVSACAFISSLYCEFKA-KLPCLVLVPLS 815 (1404)
Q Consensus 773 ~~~~~ILADEMGLGKTiqaIa~L~~L~~~~~~-~gP~LIVvP~S 815 (1404)
...+.+++..+|.|||...-++|..+...... ...+++|=|..
T Consensus 213 k~pHlLIaG~TGSGKS~~L~tlI~sLl~~~sP~ev~lilIDpKg 256 (574)
T 2iut_A 213 KMPHLLVAGTTGSGKSVGVNAMLLSILFKSTPSEARLIMIDPKM 256 (574)
T ss_dssp GSCCEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECSSS
T ss_pred hCCeeEEECCCCCCHHHHHHHHHHHHHHhCCCcceEEEEeCCCh
Confidence 36789999999999999988888888754322 23456666665
No 296
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=57.28 E-value=2.5 Score=36.84 Aligned_cols=48 Identities=25% Similarity=0.450 Sum_probs=32.2
Q ss_pred ccccccccccCC---CceEEcCCCCCcccccccCCCCCCCCCCCccCcccccccc
Q 042857 73 GYYYECVICDLG---GNLLCCDSCPRTYHLQCLDPPLKRIPNGKWQCPKCTQKND 124 (1404)
Q Consensus 73 ~~~~~C~~C~~~---g~ll~Cd~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~~~ 124 (1404)
.....|.+|... +..+..-.|.-.||..|+...+.. ...||.|+..-.
T Consensus 12 ~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~----~~~CP~Cr~~~~ 62 (69)
T 2kiz_A 12 DTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLIT----NKKCPICRVDIE 62 (69)
T ss_dssp TCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHH----CSBCTTTCSBSC
T ss_pred CCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHc----CCCCcCcCcccc
Confidence 344568899553 343444469999999999875543 235999987643
No 297
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=55.93 E-value=16 Score=37.99 Aligned_cols=25 Identities=32% Similarity=0.429 Sum_probs=21.5
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHH
Q 042857 775 KNVILADEMGLGKTVSACAFISSLY 799 (1404)
Q Consensus 775 ~~~ILADEMGLGKTiqaIa~L~~L~ 799 (1404)
.+.+|..+.|+|||..+.++...+.
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~ 79 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELA 79 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH
Confidence 6789999999999998888777664
No 298
>3p7j_A Heterochromatin protein 1; chromo shadow domain, gene silenc epigenetics, transcription; 2.30A {Drosophila melanogaster}
Probab=55.65 E-value=7.3 Score=36.45 Aligned_cols=36 Identities=17% Similarity=0.313 Sum_probs=28.5
Q ss_pred CceeEEEEEEecCccccccccCCHHHHHHHHHHHHHHH
Q 042857 608 KAVSYEFLVKWVGKSNIHNSWIPESQLKVLAKRKLENY 645 (1404)
Q Consensus 608 ~~~~~eylVKw~~~Sy~h~~Wv~e~~l~~~~~~~l~~~ 645 (1404)
..++.-|||||+|.+-.. +|+..++....+..+-.|
T Consensus 37 ~~Gel~fLVKWKg~~e~D--lVpa~ean~k~PqlVI~F 72 (87)
T 3p7j_A 37 NNGRLTFLIQFKGVDQAE--MVPSSVANEKIPRMVIHF 72 (87)
T ss_dssp ETTEEEEEEEETTCSSCE--EEEHHHHHHHCHHHHHHH
T ss_pred cCCcEEEEEEECCCCccc--eEeHHHHhhhChHHHHHH
Confidence 455789999999988644 788888888888876655
No 299
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=54.82 E-value=18 Score=41.73 Aligned_cols=43 Identities=23% Similarity=0.213 Sum_probs=28.1
Q ss_pred CHHHHHHHHHHH-Hhhc-----cCCcEEE--EcCCCchHHHHHHHHHHHHH
Q 042857 757 FPHQLEALNWLR-KCWH-----KSKNVIL--ADEMGLGKTVSACAFISSLY 799 (1404)
Q Consensus 757 ~pyQlegVnwL~-~~~~-----~~~~~IL--ADEMGLGKTiqaIa~L~~L~ 799 (1404)
+..+++.+..++ .... .+...+| ..+.|.|||..+-.++..+.
T Consensus 27 R~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~ 77 (412)
T 1w5s_A 27 RRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVS 77 (412)
T ss_dssp SCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHH
Confidence 456666665444 3322 2345667 79999999998887776654
No 300
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=53.31 E-value=37 Score=39.44 Aligned_cols=98 Identities=14% Similarity=0.109 Sum_probs=65.0
Q ss_pred hhhHHHHHHHHHHHHHHcCCeEEEEecchhHHHHHHHHHhhhcC-CceEEEEeCCCCHHHHHHHHHHHhcCCCceEEEee
Q 042857 1069 ASAKLTLLHSMLKVLYKEGHRVLIFSQMTKLLDILEDYLNIEFG-PKTYERVDGSVSVGDRQAAITRFNQDKSRFVFLLS 1147 (1404)
Q Consensus 1069 ~SgKl~~L~kLL~kl~~~G~KVLIFSq~~~~LDiLed~L~~~f~-g~~y~rLdGs~s~~eRq~~Id~Fn~~~s~~VfLLS 1147 (1404)
.|||-.+..-.+..+...|.++||.++....+.-+.+.+..... ++.+..++|+++..+|...+..+..+... +++.+
T Consensus 46 GsGKT~~~l~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~-Iiv~T 124 (414)
T 3oiy_A 46 GVGKTTFGMMTALWLARKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYH-ILVFS 124 (414)
T ss_dssp SSSHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHHHCCSSCCEEECCTTSCHHHHHHHHHHHHHTCCS-EEEEE
T ss_pred CCCHHHHHHHHHHHHhcCCCEEEEEECCHHHHHHHHHHHHHHccCCceEEEEECCCChhhHHHHHHHhhcCCCC-EEEEC
Confidence 46777644444444446788999999999888777777766332 67899999999998888888888665443 33344
Q ss_pred cccccc---cccccCCCEEEEEc
Q 042857 1148 TRSCGL---GINLATADTVIIYD 1167 (1404)
Q Consensus 1148 TrAgG~---GINL~~AdtVIi~D 1167 (1404)
....-. -+++...+.||+=+
T Consensus 125 p~~l~~~l~~~~~~~~~~iViDE 147 (414)
T 3oiy_A 125 TQFVSKNREKLSQKRFDFVFVDD 147 (414)
T ss_dssp HHHHHHCHHHHTTCCCSEEEESC
T ss_pred HHHHHHHHHHhccccccEEEEeC
Confidence 333211 14455666666533
No 301
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=51.80 E-value=15 Score=46.79 Aligned_cols=57 Identities=23% Similarity=0.157 Sum_probs=44.0
Q ss_pred CCCHHHHHHHHHHHHhhccCCcEEEEcCCCchHHHHHHHHHHHHHhhcc-CCCcEEEEeCCCCh
Q 042857 755 ALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFK-AKLPCLVLVPLSTM 817 (1404)
Q Consensus 755 ~L~pyQlegVnwL~~~~~~~~~~ILADEMGLGKTiqaIa~L~~L~~~~~-~~gP~LIVvP~Sll 817 (1404)
.|.|.|.++|.. ..+..++....|.|||.+.+.-+.+++...+ ....+|+|+.+...
T Consensus 11 ~Ln~~Q~~av~~------~~g~~lV~AgAGSGKT~vL~~ri~~ll~~~~~~p~~IL~vTFTnkA 68 (724)
T 1pjr_A 11 HLNKEQQEAVRT------TEGPLLIMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAITFTNKA 68 (724)
T ss_dssp TSCHHHHHHHHC------CSSCEEEEECTTSCHHHHHHHHHHHHHHTTCCCGGGEEEEESSHHH
T ss_pred hCCHHHHHHHhC------CCCCEEEEEcCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHHH
Confidence 588999999863 2566777779999999999998988886533 33468999887644
No 302
>1weq_A PHD finger protein 7; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=51.50 E-value=9.9 Score=35.40 Aligned_cols=32 Identities=31% Similarity=0.892 Sum_probs=27.3
Q ss_pred eEEcCCCC-CcccccccCCCCCCCCCCCccCccccc
Q 042857 87 LLCCDSCP-RTYHLQCLDPPLKRIPNGKWQCPKCTQ 121 (1404)
Q Consensus 87 ll~Cd~C~-~~~H~~Cl~Ppl~~~P~g~W~C~~C~~ 121 (1404)
|++|..|. .+-|..|.. |.. ....|.|..|..
T Consensus 46 L~lC~~Cgs~gtH~~Cs~--l~~-~~~~weC~~C~~ 78 (85)
T 1weq_A 46 LILCATCGSHGTHRDCSS--LRP-NSKKWECNECLP 78 (85)
T ss_dssp CEECSSSCCCEECSGGGT--CCT-TCSCCCCTTTSC
T ss_pred EEeCcccCCchhHHHHhC--CcC-CCCCEECCcCcc
Confidence 99999999 899999998 433 457899999984
No 303
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=51.35 E-value=2.5 Score=37.59 Aligned_cols=45 Identities=31% Similarity=0.648 Sum_probs=31.3
Q ss_pred cccccccccC---CCceEEcCCCCCcccccccCCCCCCCCCCCccCcccccc
Q 042857 74 YYYECVICDL---GGNLLCCDSCPRTYHLQCLDPPLKRIPNGKWQCPKCTQK 122 (1404)
Q Consensus 74 ~~~~C~~C~~---~g~ll~Cd~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~ 122 (1404)
....|.+|.. .++.+..-.|.-.||..|+...+.. ...||.|+..
T Consensus 22 ~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~----~~~CP~Cr~~ 69 (75)
T 1x4j_A 22 EQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKA----NRTCPICRAD 69 (75)
T ss_dssp SCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHH----CSSCTTTCCC
T ss_pred CCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHc----CCcCcCcCCc
Confidence 3446888874 3444444458989999999876543 2479999865
No 304
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=50.83 E-value=11 Score=33.52 Aligned_cols=46 Identities=26% Similarity=0.577 Sum_probs=31.1
Q ss_pred cccccccccCC---CceEEcCCCCCcccccccCCCCCCCCCCCccCccccccc
Q 042857 74 YYYECVICDLG---GNLLCCDSCPRTYHLQCLDPPLKRIPNGKWQCPKCTQKN 123 (1404)
Q Consensus 74 ~~~~C~~C~~~---g~ll~Cd~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~~ 123 (1404)
....|.+|... +..+.--.|.-.||..|+...+.. ...||.|+..-
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~----~~~CP~Cr~~~ 62 (78)
T 2ect_A 14 SGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQ----HDSCPVCRKSL 62 (78)
T ss_dssp SSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTT----TCSCTTTCCCC
T ss_pred CCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHc----CCcCcCcCCcc
Confidence 34569999653 233322358889999999876543 24799998763
No 305
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=50.07 E-value=19 Score=43.67 Aligned_cols=56 Identities=11% Similarity=0.180 Sum_probs=43.1
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEeCCCCh-HHHHHHHHHHCCCCcEEEE
Q 042857 774 SKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLSTM-PNWLAEFALWAPNLNVVEY 836 (1404)
Q Consensus 774 ~~~~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP~Sll-~nW~rEf~kw~P~l~Vvvy 836 (1404)
+....|..-.|.|||+.+..++.. ..+|+|||||.... .+|..++..|+|+. |..|
T Consensus 14 ~~~~~l~g~~gs~ka~~~a~l~~~------~~~p~lvv~~~~~~A~~l~~~l~~~~~~~-v~~f 70 (483)
T 3hjh_A 14 GEQRLLGELTGAACATLVAEIAER------HAGPVVLIAPDMQNALRLHDEISQFTDQM-VMNL 70 (483)
T ss_dssp TCEEEEECCCTTHHHHHHHHHHHH------SSSCEEEEESSHHHHHHHHHHHHHTCSSC-EEEC
T ss_pred CCeEEEeCCCchHHHHHHHHHHHH------hCCCEEEEeCCHHHHHHHHHHHHhhCCCc-EEEE
Confidence 445678888999999887766532 24689999998766 88999999999875 4443
No 306
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=49.48 E-value=34 Score=41.09 Aligned_cols=50 Identities=12% Similarity=0.080 Sum_probs=31.3
Q ss_pred cEEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEeCCCChHHHHHHHHHHC
Q 042857 776 NVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLSTMPNWLAEFALWA 828 (1404)
Q Consensus 776 ~~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP~Sll~nW~rEf~kw~ 828 (1404)
-.+++...|.|||.++..++.++... ...+++|+-...-..-...+..|.
T Consensus 102 vIlivG~~G~GKTTt~~kLA~~l~~~---G~kVllv~~D~~R~aa~eqL~~~~ 151 (443)
T 3dm5_A 102 ILLMVGIQGSGKTTTVAKLARYFQKR---GYKVGVVCSDTWRPGAYHQLRQLL 151 (443)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHTT---TCCEEEEECCCSSTHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHHHHHHC---CCeEEEEeCCCcchhHHHHHHHHH
Confidence 35678889999999999888877642 234555553322233344555555
No 307
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=49.17 E-value=3.9 Score=37.48 Aligned_cols=48 Identities=25% Similarity=0.499 Sum_probs=31.9
Q ss_pred ccccccccccCCC----ceEE-c--CCCCCcccccccCCCCCCCCCCCccCcccccc
Q 042857 73 GYYYECVICDLGG----NLLC-C--DSCPRTYHLQCLDPPLKRIPNGKWQCPKCTQK 122 (1404)
Q Consensus 73 ~~~~~C~~C~~~g----~ll~-C--d~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~ 122 (1404)
.....|.+|.... .++. | .++...||..|+...|.. .+...||.|+..
T Consensus 13 ~~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~--~~~~~CplCr~~ 67 (80)
T 2d8s_A 13 SSQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKS--SDTRCCELCKYE 67 (80)
T ss_dssp TTSCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHH--HCCSBCSSSCCB
T ss_pred CCCCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhh--CCCCCCCCCCCe
Confidence 3445699997532 3442 2 233489999999987654 234689999876
No 308
>3i3c_A Chromobox protein homolog 5; CBX5, chromo shadow domain, structural genomics, structural consortium, SGC, centromere, nucleus, phosphoprotein; 2.48A {Homo sapiens} SCOP: b.34.13.2
Probab=49.01 E-value=5.2 Score=36.43 Aligned_cols=47 Identities=19% Similarity=0.304 Sum_probs=27.5
Q ss_pred cchhhhhhhccCCCCcceeeeccCCCCCCcccccCCCchHHHhhHHHHHHH
Q 042857 662 KQPQRVISLRSSKDGTREAFVKWTGLPYDECTWEKLDEPALEKYSHLTDLF 712 (1404)
Q Consensus 662 ~~~eRii~~r~~~~~~~eylVKW~gL~Y~~~TWE~~~~~~~~~~~~li~~~ 712 (1404)
..|++|+... ..+|...|||||+|..--+.++. .+ ...++++++-.|
T Consensus 23 le~EkIlg~t-~~~Gel~fLVKWKg~~e~dlVpa--~e-an~k~PqlVI~F 69 (75)
T 3i3c_A 23 LEPEKIIGAT-DSCGDLMFLMKWKDTDEADLVLA--KE-ANVKCPQIVIAF 69 (75)
T ss_dssp CCEEEEEEEE-C---CCEEEEEETTSSCEEEEEH--HH-HHHHCHHHHHHH
T ss_pred CCeeEEeeEE-ccCCcEEEEEEECCCChhceEEH--HH-HhhhChHHHHHH
Confidence 5789999765 44678899999998655443332 11 223456655444
No 309
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=48.16 E-value=34 Score=39.84 Aligned_cols=52 Identities=15% Similarity=0.099 Sum_probs=37.9
Q ss_pred HHHHHHH--hhccCCcEEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEeCCCCh
Q 042857 763 ALNWLRK--CWHKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLSTM 817 (1404)
Q Consensus 763 gVnwL~~--~~~~~~~~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP~Sll 817 (1404)
+++.++. -+..+.-.+|+.+.|.|||..++.++..+... .+++++|.....+
T Consensus 50 ~LD~~Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~~~~~~---g~~vlyid~E~s~ 103 (356)
T 1u94_A 50 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQRE---GKTCAFIDAEHAL 103 (356)
T ss_dssp HHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHT---TCCEEEEESSCCC
T ss_pred HHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHC---CCeEEEEeCCCCc
Confidence 5555543 34566778999999999999999988876542 3468888776554
No 310
>3q6s_A Chromobox protein homolog 1; incenp, heterochromatin, centromere, cell cycle; 1.93A {Homo sapiens} SCOP: b.34.13.2
Probab=47.18 E-value=7.6 Score=35.59 Aligned_cols=47 Identities=21% Similarity=0.286 Sum_probs=30.2
Q ss_pred cchhhhhhhccCCCCcceeeeccCCCCCCcccccCCCchHHHhhHHHHHHH
Q 042857 662 KQPQRVISLRSSKDGTREAFVKWTGLPYDECTWEKLDEPALEKYSHLTDLF 712 (1404)
Q Consensus 662 ~~~eRii~~r~~~~~~~eylVKW~gL~Y~~~TWE~~~~~~~~~~~~li~~~ 712 (1404)
+.|++|+... ...|...|||||+|..--+.++.. ....++++++-.|
T Consensus 10 le~EkI~g~~-~~~Gel~fLvKWKg~~~~dlVpa~---ean~k~PqlVI~F 56 (78)
T 3q6s_A 10 LEPERIIGAT-DSSGELMFLMKWKNSDEADLVPAK---EANVKCPQVVISF 56 (78)
T ss_dssp CCEEEEEEEE-CTTSSCEEEEEETTCSCEEEEEHH---HHHHHSHHHHHHH
T ss_pred CCceEEeeEE-cCCCcEEEEEEECCCChhheEeHH---HHHhhChHHHHHH
Confidence 5788999764 446788999999987654433331 1223566665544
No 311
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=47.02 E-value=54 Score=44.13 Aligned_cols=98 Identities=11% Similarity=0.127 Sum_probs=66.8
Q ss_pred hhhHHHHHHHHHHHHHHcCCeEEEEecchhHHHHHHHHHhhhcC--CceEEEEeCCCCHHHHHHHHHHHhcCCCceEEEe
Q 042857 1069 ASAKLTLLHSMLKVLYKEGHRVLIFSQMTKLLDILEDYLNIEFG--PKTYERVDGSVSVGDRQAAITRFNQDKSRFVFLL 1146 (1404)
Q Consensus 1069 ~SgKl~~L~kLL~kl~~~G~KVLIFSq~~~~LDiLed~L~~~f~--g~~y~rLdGs~s~~eRq~~Id~Fn~~~s~~VfLL 1146 (1404)
.+||.......+-.+...|.++||.++.+..+.-..+.+...+. +..+..++|..+..++...+.....+... +++.
T Consensus 634 GsGKT~val~aa~~~~~~g~~vlvlvPt~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~d-IvV~ 712 (1151)
T 2eyq_A 634 GFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKID-ILIG 712 (1151)
T ss_dssp CTTTHHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCS-EEEE
T ss_pred CCCHHHHHHHHHHHHHHhCCeEEEEechHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCCCC-EEEE
Confidence 36777655444444556789999999998887776666665544 46788899999999999998888765444 3444
Q ss_pred ecccccccccccCCCEEEEEc
Q 042857 1147 STRSCGLGINLATADTVIIYD 1167 (1404)
Q Consensus 1147 STrAgG~GINL~~AdtVIi~D 1167 (1404)
+.......+++...+.||+=+
T Consensus 713 T~~ll~~~~~~~~l~lvIiDE 733 (1151)
T 2eyq_A 713 THKLLQSDVKFKDLGLLIVDE 733 (1151)
T ss_dssp CTHHHHSCCCCSSEEEEEEES
T ss_pred CHHHHhCCccccccceEEEec
Confidence 444445556666665555433
No 312
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=46.93 E-value=55 Score=39.14 Aligned_cols=34 Identities=18% Similarity=0.120 Sum_probs=23.5
Q ss_pred cEEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEe
Q 042857 776 NVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLV 812 (1404)
Q Consensus 776 ~~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVv 812 (1404)
-.+++...|.|||..+..++.++... .+.+++|+
T Consensus 99 vI~lvG~~GsGKTTt~~kLA~~l~~~---G~kVllv~ 132 (433)
T 3kl4_A 99 IIMLVGVQGSGKTTTAGKLAYFYKKR---GYKVGLVA 132 (433)
T ss_dssp EEEECCCTTSCHHHHHHHHHHHHHHT---TCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHc---CCeEEEEe
Confidence 35677889999999888888777542 23455544
No 313
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=46.84 E-value=33 Score=36.68 Aligned_cols=142 Identities=15% Similarity=0.135 Sum_probs=71.1
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEeCCCC-hHHHHHHHHHHCCCCcEEEEecchhHHHHHHHhhhc
Q 042857 774 SKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLST-MPNWLAEFALWAPNLNVVEYHGCAKARAIIRQYEWH 852 (1404)
Q Consensus 774 ~~~~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP~Sl-l~nW~rEf~kw~P~l~Vvvy~G~~~~R~~ir~~E~~ 852 (1404)
.+..++.-..|-|||-.|+++...... ...+++|+--..- ...=..++-.-++ +.+.. .|. .+.|.
T Consensus 28 ~g~i~v~tG~GkGKTTaA~GlalRA~g---~G~rV~~vQF~Kg~~~~gE~~~l~~L~-v~~~~-~g~--------gf~~~ 94 (196)
T 1g5t_A 28 RGIIIVFTGNGKGKTTAAFGTAARAVG---HGKNVGVVQFIKGTWPNGERNLLEPHG-VEFQV-MAT--------GFTWE 94 (196)
T ss_dssp CCCEEEEESSSSCHHHHHHHHHHHHHH---TTCCEEEEESSCCSSCCHHHHHHGGGT-CEEEE-CCT--------TCCCC
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHH---CCCeEEEEEeeCCCCCccHHHHHHhCC-cEEEE-ccc--------ccccC
Confidence 467889999999999999988876653 2346777743221 1111111111111 21111 110 00000
Q ss_pred cCCCCccccccCCCCceEEEeeHHHHHhhhccccCCCceEEEEccccccCC----CccHHHHHHhhcccccEEEEeccCC
Q 042857 853 ASDPDNLNKKTSSYKFNVLLTTYEMILADSSHLRGVPWEVLVVDEGHRLKN----SGSKLFSLLNSFSFQHRVLLTGTPL 928 (1404)
Q Consensus 853 ~~~~~~~~~~~~~~kfdVvITTYe~l~~d~~~L~~i~w~lVIVDEAHrlKN----~~Sk~~~~L~~l~~~~rLLLTGTPl 928 (1404)
.....-+. ..--..+..-...+..-.+++||+||.-..-+ ....+...+..-....-++|||-
T Consensus 95 ----------~~~~~~~~-~~a~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr-- 161 (196)
T 1g5t_A 95 ----------TQNREADT-AACMAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGR-- 161 (196)
T ss_dssp ----------GGGHHHHH-HHHHHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECS--
T ss_pred ----------CCCcHHHH-HHHHHHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECC--
Confidence 00000000 00011222234456667899999999844211 22346666666556667999995
Q ss_pred CCChHHHHHHhhhh
Q 042857 929 QNNIGEMYNLLNFL 942 (1404)
Q Consensus 929 qNnl~EL~sLL~fL 942 (1404)
+-+.+|..+-+++
T Consensus 162 -~ap~~l~e~AD~V 174 (196)
T 1g5t_A 162 -GCHRDILDLADTV 174 (196)
T ss_dssp -SCCHHHHHHCSEE
T ss_pred -CCcHHHHHhCcce
Confidence 3455555544443
No 314
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=46.46 E-value=3.5 Score=34.04 Aligned_cols=44 Identities=25% Similarity=0.514 Sum_probs=31.4
Q ss_pred ccccccccCC----CceEEcCCCCCcccccccCCCCCCCCCCCccCcccccc
Q 042857 75 YYECVICDLG----GNLLCCDSCPRTYHLQCLDPPLKRIPNGKWQCPKCTQK 122 (1404)
Q Consensus 75 ~~~C~~C~~~----g~ll~Cd~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~ 122 (1404)
...|.+|... ++....-.|.-.||..|+...+..- ..||.|+..
T Consensus 5 ~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~----~~CP~Cr~~ 52 (55)
T 2ecm_A 5 SSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEG----YRCPLCSGP 52 (55)
T ss_dssp CCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHT----CCCTTSCCS
T ss_pred CCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcC----CcCCCCCCc
Confidence 4569999764 2345566799999999998654432 579999864
No 315
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=46.29 E-value=5.4 Score=44.04 Aligned_cols=46 Identities=26% Similarity=0.586 Sum_probs=33.7
Q ss_pred ccccccccCC-CceEEcCCCCCcccccccCCCCCCCCCCCccCcccccc
Q 042857 75 YYECVICDLG-GNLLCCDSCPRTYHLQCLDPPLKRIPNGKWQCPKCTQK 122 (1404)
Q Consensus 75 ~~~C~~C~~~-g~ll~Cd~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~ 122 (1404)
-..|.+|..- ..-..|..|+..||..|+.-.+.. .+.-.||.|...
T Consensus 180 i~~C~iC~~iv~~g~~C~~C~~~~H~~C~~~~~~~--~~~~~CP~C~~~ 226 (238)
T 3nw0_A 180 VKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQS--NAEPRCPHCNDY 226 (238)
T ss_dssp CCBCTTTCSBCSSCEECSSSCCEECHHHHHHHTTT--CSSCBCTTTCCB
T ss_pred CCcCcchhhHHhCCcccCccChHHHHHHHHHHHHh--CCCCCCCCCCCC
Confidence 4469999873 224679999999999999755443 234569999865
No 316
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=46.27 E-value=15 Score=47.51 Aligned_cols=41 Identities=24% Similarity=0.321 Sum_probs=30.1
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEeCCCChHHH
Q 042857 774 SKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLSTMPNW 820 (1404)
Q Consensus 774 ~~~~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP~Sll~nW 820 (1404)
..+.+|....|+|||+.+-++...+ ..||+.|-...++..|
T Consensus 511 ~~gvLl~GPPGtGKT~lAkaiA~e~------~~~f~~v~~~~l~s~~ 551 (806)
T 3cf2_A 511 SKGVLFYGPPGCGKTLLAKAIANEC------QANFISIKGPELLTMW 551 (806)
T ss_dssp CSCCEEESSTTSSHHHHHHHHHHTT------TCEEEECCHHHHHTTT
T ss_pred CceEEEecCCCCCchHHHHHHHHHh------CCceEEeccchhhccc
Confidence 4688999999999998887766543 3467766665555555
No 317
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=45.11 E-value=76 Score=32.58 Aligned_cols=37 Identities=24% Similarity=0.375 Sum_probs=24.3
Q ss_pred cCCCchHHHHHHHHHHHHHhhccCCCcEEEEe--CCCChHHH
Q 042857 781 DEMGLGKTVSACAFISSLYCEFKAKLPCLVLV--PLSTMPNW 820 (1404)
Q Consensus 781 DEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVv--P~Sll~nW 820 (1404)
---|.|||..++.+...+... ..++|+|= |...+..|
T Consensus 9 ~kgG~GKTt~a~~la~~la~~---g~~vlliD~D~~~~~~~~ 47 (206)
T 4dzz_A 9 PKGGSGKTTAVINIATALSRS---GYNIAVVDTDPQMSLTNW 47 (206)
T ss_dssp SSTTSSHHHHHHHHHHHHHHT---TCCEEEEECCTTCHHHHH
T ss_pred CCCCccHHHHHHHHHHHHHHC---CCeEEEEECCCCCCHHHH
Confidence 456899999999988888643 23566664 33344444
No 318
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=44.35 E-value=74 Score=38.94 Aligned_cols=76 Identities=16% Similarity=0.204 Sum_probs=51.5
Q ss_pred HcCCeEEEEecchhHHHHHHHHHhhhcCCceEEEEeCC-CCHHHHHHHHHHHhcCCCceEEEeec--cccccccccc---
Q 042857 1085 KEGHRVLIFSQMTKLLDILEDYLNIEFGPKTYERVDGS-VSVGDRQAAITRFNQDKSRFVFLLST--RSCGLGINLA--- 1158 (1404)
Q Consensus 1085 ~~G~KVLIFSq~~~~LDiLed~L~~~f~g~~y~rLdGs-~s~~eRq~~Id~Fn~~~s~~VfLLST--rAgG~GINL~--- 1158 (1404)
..+.++|||...-.+++.+.+.+ +..+ .+.|. ++ +.++++.|...+. .+|+++ ....+|||++
T Consensus 391 ~~~g~~lvlF~Sy~~l~~v~~~~-----~~~v-~~q~~~~~---~~~~~~~~~~~~~--~vl~~v~gg~~~EGiD~~d~~ 459 (551)
T 3crv_A 391 QAKANVLVVFPSYEIMDRVMSRI-----SLPK-YVESEDSS---VEDLYSAISANNK--VLIGSVGKGKLAEGIELRNND 459 (551)
T ss_dssp HCSSEEEEEESCHHHHHHHHTTC-----CSSE-EECCSSCC---HHHHHHHTTSSSS--CEEEEESSCCSCCSSCCEETT
T ss_pred hCCCCEEEEecCHHHHHHHHHhc-----CCcE-EEcCCCCC---HHHHHHHHHhcCC--eEEEEEecceecccccccccC
Confidence 45668999988888877776521 3333 33443 23 4668888864443 355665 6899999999
Q ss_pred --CCCEEEEEcCCCC
Q 042857 1159 --TADTVIIYDSDFN 1171 (1404)
Q Consensus 1159 --~AdtVIi~DsdWN 1171 (1404)
.+..|||.-.|+-
T Consensus 460 g~~l~~viI~~lPfp 474 (551)
T 3crv_A 460 RSLISDVVIVGIPYP 474 (551)
T ss_dssp EESEEEEEEESCCCC
T ss_pred CcceeEEEEEcCCCC
Confidence 4789999988763
No 319
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=42.83 E-value=46 Score=37.73 Aligned_cols=62 Identities=11% Similarity=0.033 Sum_probs=44.6
Q ss_pred HHHHHHHHhhccCCcEEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEeCCCChHHHHHHHHH
Q 042857 762 EALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLSTMPNWLAEFAL 826 (1404)
Q Consensus 762 egVnwL~~~~~~~~~~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP~Sll~nW~rEf~k 826 (1404)
.+++.+..-+..+.-.+|+...|.|||.-++.++......+ .|+|++.......+....+..
T Consensus 56 ~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g---~~vl~~slE~s~~~l~~R~~~ 117 (315)
T 3bh0_A 56 TELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSDND---DVVNLHSLEMGKKENIKRLIV 117 (315)
T ss_dssp HHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTT---CEEEEEESSSCHHHHHHHHHH
T ss_pred HHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcC---CeEEEEECCCCHHHHHHHHHH
Confidence 35565665566777789999999999998888887665432 588888877666665555443
No 320
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=41.93 E-value=64 Score=40.75 Aligned_cols=55 Identities=25% Similarity=0.228 Sum_probs=37.1
Q ss_pred CCCCHHHHHHHHHHHHhhccCCcEEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEeCCCC
Q 042857 754 GALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLST 816 (1404)
Q Consensus 754 ~~L~pyQlegVnwL~~~~~~~~~~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP~Sl 816 (1404)
+.+.+.|.+++..+..... ...+|...-|-|||..+-.++..+. +.++|.+|...
T Consensus 174 ~~~T~dQ~~al~~~~~~~~--~~~vlta~RGRGKSa~lG~~~a~~~------~~~~vtAP~~~ 228 (671)
T 2zpa_A 174 GAPQPEQQQLLKQLMTMPP--GVAAVTAARGRGKSALAGQLISRIA------GRAIVTAPAKA 228 (671)
T ss_dssp SSCCHHHHHHHHHHTTCCS--EEEEEEECTTSSHHHHHHHHHHHSS------SCEEEECSSCC
T ss_pred CCCCHHHHHHHHHHHHhhh--CeEEEecCCCCCHHHHHHHHHHHHH------hCcEEECCCHH
Confidence 4688999999988766432 3356777899999955544444432 23588888643
No 321
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=41.70 E-value=23 Score=42.49 Aligned_cols=44 Identities=23% Similarity=0.296 Sum_probs=34.6
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEeCCCChHHHHHH
Q 042857 774 SKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLSTMPNWLAE 823 (1404)
Q Consensus 774 ~~~~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP~Sll~nW~rE 823 (1404)
.+|.+|....|+|||+.+-+++..+ ..||+.|....++..|..|
T Consensus 215 prGvLL~GPPGtGKTllAkAiA~e~------~~~~~~v~~s~l~sk~~Ge 258 (437)
T 4b4t_L 215 PKGVLLYGPPGTGKTLLAKAVAATI------GANFIFSPASGIVDKYIGE 258 (437)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHHH------TCEEEEEEGGGTCCSSSSH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHh------CCCEEEEehhhhccccchH
Confidence 4789999999999999998887665 3478888877777666444
No 322
>3p7j_A Heterochromatin protein 1; chromo shadow domain, gene silenc epigenetics, transcription; 2.30A {Drosophila melanogaster}
Probab=41.65 E-value=8.9 Score=35.85 Aligned_cols=47 Identities=15% Similarity=0.266 Sum_probs=31.0
Q ss_pred cchhhhhhhccCCCCcceeeeccCCCCCCcccccCCCchHHHhhHHHHHHH
Q 042857 662 KQPQRVISLRSSKDGTREAFVKWTGLPYDECTWEKLDEPALEKYSHLTDLF 712 (1404)
Q Consensus 662 ~~~eRii~~r~~~~~~~eylVKW~gL~Y~~~TWE~~~~~~~~~~~~li~~~ 712 (1404)
+.|++|+.... .+|...|||||+|..--+.+|.. ....+++.++-.|
T Consensus 26 le~EkIlgat~-~~Gel~fLVKWKg~~e~DlVpa~---ean~k~PqlVI~F 72 (87)
T 3p7j_A 26 LEAEKILGASD-NNGRLTFLIQFKGVDQAEMVPSS---VANEKIPRMVIHF 72 (87)
T ss_dssp CCEEEEEEEEE-ETTEEEEEEEETTCSSCEEEEHH---HHHHHCHHHHHHH
T ss_pred CCceEEeeEEc-cCCcEEEEEEECCCCccceEeHH---HHhhhChHHHHHH
Confidence 57899997653 45778899999987766655542 2224566655444
No 323
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=41.15 E-value=4.8 Score=38.68 Aligned_cols=34 Identities=29% Similarity=0.637 Sum_probs=24.2
Q ss_pred cCCCCCcccccccCCCCCCCC-CCCccCccccccc
Q 042857 90 CDSCPRTYHLQCLDPPLKRIP-NGKWQCPKCTQKN 123 (1404)
Q Consensus 90 Cd~C~~~~H~~Cl~Ppl~~~P-~g~W~C~~C~~~~ 123 (1404)
.-.|.-.||..|+...+..-. ...-.||.|+..-
T Consensus 58 ~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~ 92 (114)
T 1v87_A 58 LTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIY 92 (114)
T ss_dssp ESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBS
T ss_pred cCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCcc
Confidence 456889999999997763211 3456899998653
No 324
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=41.10 E-value=6.8 Score=35.55 Aligned_cols=28 Identities=29% Similarity=0.740 Sum_probs=22.7
Q ss_pred CCCCCcccccccCCCCCCCCCCCccCcccccc
Q 042857 91 DSCPRTYHLQCLDPPLKRIPNGKWQCPKCTQK 122 (1404)
Q Consensus 91 d~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~ 122 (1404)
-.|.-.||..|+.+.+..-. .||.|+..
T Consensus 46 ~~C~H~FH~~Ci~~Wl~~~~----~CP~CR~~ 73 (81)
T 2ecl_A 46 GECNHSFHNCCMSLWVKQNN----RCPLCQQD 73 (81)
T ss_dssp ETTSCEEEHHHHHHHTTTCC----BCTTTCCB
T ss_pred CCCCCccChHHHHHHHHhCC----CCCCcCCC
Confidence 36999999999998776532 79999865
No 325
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=41.01 E-value=37 Score=40.70 Aligned_cols=61 Identities=11% Similarity=0.051 Sum_probs=45.8
Q ss_pred HHHHHHHHhhccCCcEEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEeCCCChHHHHHHHH
Q 042857 762 EALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLSTMPNWLAEFA 825 (1404)
Q Consensus 762 egVnwL~~~~~~~~~~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP~Sll~nW~rEf~ 825 (1404)
.+++.+..-+..+.-.||+...|.|||.-++.++...... ..|+|++.......++...+.
T Consensus 185 ~~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~~~a~~---g~~vl~fSlEms~~ql~~R~~ 245 (444)
T 3bgw_A 185 TELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSDN---DDVVNLHSLEMGKKENIKRLI 245 (444)
T ss_dssp HHHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHHHHHHT---TCEEEEECSSSCTTHHHHHHH
T ss_pred HHHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHHHHHHc---CCEEEEEECCCCHHHHHHHHH
Confidence 4566676667777789999999999999999888877643 458888887666556555443
No 326
>2lq6_A Bromodomain-containing protein 1; PHD finger, metal binding protein; NMR {Homo sapiens}
Probab=40.89 E-value=11 Score=35.24 Aligned_cols=31 Identities=23% Similarity=0.760 Sum_probs=24.7
Q ss_pred ccccccccccC--CCceEEcCC--CCCcccccccC
Q 042857 73 GYYYECVICDL--GGNLLCCDS--CPRTYHLQCLD 103 (1404)
Q Consensus 73 ~~~~~C~~C~~--~g~ll~Cd~--C~~~~H~~Cl~ 103 (1404)
-+...|.+|+. .|-.+.|.. |..+||..|-.
T Consensus 15 R~~l~C~iC~~~~~GAciqC~~~~C~~~fHv~CA~ 49 (87)
T 2lq6_A 15 RWKLTCYLCKQKGVGASIQCHKANCYTAFHVTCAQ 49 (87)
T ss_dssp CCCCCBTTTTBCCSSCEEECSCTTTCCEEEHHHHH
T ss_pred HhcCCCcCCCCCCCcEeEecCCCCCCCcCcHHHHH
Confidence 34556999975 378889984 99999999965
No 327
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=40.70 E-value=32 Score=46.61 Aligned_cols=57 Identities=16% Similarity=0.116 Sum_probs=43.5
Q ss_pred CCCCCHHHHHHHHHHHHhhccCCcEEEEcCCCchHHHHHHHHHHHHHhhcc---CCCcEEEEeCCC
Q 042857 753 GGALFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFK---AKLPCLVLVPLS 815 (1404)
Q Consensus 753 g~~L~pyQlegVnwL~~~~~~~~~~ILADEMGLGKTiqaIa~L~~L~~~~~---~~gP~LIVvP~S 815 (1404)
+..|.|-|..++. ..+.+.++...-|.|||.+.+.-+.+++..+. ....+|||+++.
T Consensus 8 ~~~~t~eQ~~~i~------~~~~~~~v~a~AGSGKT~vl~~ri~~ll~~~~~~~~~~~il~~Tft~ 67 (1232)
T 3u4q_A 8 DSTWTDDQWNAIV------STGQDILVAAAAGSGKTAVLVERMIRKITAEENPIDVDRLLVVTFTN 67 (1232)
T ss_dssp --CCCHHHHHHHH------CCSSCEEEEECTTCCHHHHHHHHHHHHHSCSSSCCCGGGEEEECSSH
T ss_pred CCCCCHHHHHHHh------CCCCCEEEEecCCCcHHHHHHHHHHHHHhcCCCCCCccceEEEeccH
Confidence 3579999999985 23778899999999999998887777765543 334699999863
No 328
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=39.91 E-value=1.3e+02 Score=32.95 Aligned_cols=56 Identities=13% Similarity=0.020 Sum_probs=36.3
Q ss_pred hccCCcEEEEcCCCchHHHHHHHHHHHHHhhcc--------CCCcEEEEeCCCChHHHHHHHHHH
Q 042857 771 WHKSKNVILADEMGLGKTVSACAFISSLYCEFK--------AKLPCLVLVPLSTMPNWLAEFALW 827 (1404)
Q Consensus 771 ~~~~~~~ILADEMGLGKTiqaIa~L~~L~~~~~--------~~gP~LIVvP~Sll~nW~rEf~kw 827 (1404)
+..+.-.+|+...|.|||..+..++..+. .+. ..++++++.......+....+..+
T Consensus 27 l~~G~i~~i~G~~GsGKTtl~~~l~~~~~-~g~~~~g~~~~~~~~v~~~~~e~~~~~~~~r~~~~ 90 (279)
T 1nlf_A 27 MVAGTVGALVSPGGAGKSMLALQLAAQIA-GGPDLLEVGELPTGPVIYLPAEDPPTAIHHRLHAL 90 (279)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHH-TCCCTTCCCCCCCCCEEEEESSSCHHHHHHHHHHH
T ss_pred ccCCCEEEEEcCCCCCHHHHHHHHHHHHh-cCCCcCCCccCCCccEEEEECCCCHHHHHHHHHHH
Confidence 34567788999999999998888877543 210 135677777665555544444433
No 329
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=38.66 E-value=7.2 Score=34.33 Aligned_cols=48 Identities=27% Similarity=0.422 Sum_probs=31.3
Q ss_pred ccccccccCC---CceEEcCCCCCcccccccCCCCCCCCCCCccCcccccccccc
Q 042857 75 YYECVICDLG---GNLLCCDSCPRTYHLQCLDPPLKRIPNGKWQCPKCTQKNDQL 126 (1404)
Q Consensus 75 ~~~C~~C~~~---g~ll~Cd~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~~~~~ 126 (1404)
...|.+|... +..+.--.|.-.||..|+...+..- ..||.|+..-...
T Consensus 15 ~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~----~~CP~Cr~~~~~~ 65 (74)
T 2ep4_A 15 HELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVR----KVCPLCNMPVLQL 65 (74)
T ss_dssp SCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHC----SBCTTTCCBCSSC
T ss_pred CCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcC----CcCCCcCcccccc
Confidence 3468899764 2222222588889999998765432 2799998764433
No 330
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=38.38 E-value=53 Score=37.95 Aligned_cols=59 Identities=15% Similarity=0.090 Sum_probs=42.8
Q ss_pred HHHHHHHhhccCCcEEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEeCCCChHHHHHHH
Q 042857 763 ALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLSTMPNWLAEF 824 (1404)
Q Consensus 763 gVnwL~~~~~~~~~~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP~Sll~nW~rEf 824 (1404)
.++.+..-+..+.=.||+...|.|||.-++.++..+.. ...|++++.......+....+
T Consensus 35 ~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~---~g~~Vl~fSlEms~~ql~~Rl 93 (338)
T 4a1f_A 35 QLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALN---DDRGVAVFSLEMSAEQLALRA 93 (338)
T ss_dssp HHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHH---TTCEEEEEESSSCHHHHHHHH
T ss_pred HHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH---cCCeEEEEeCCCCHHHHHHHH
Confidence 45555555667777899999999999998888877654 346888888765555544433
No 331
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=37.26 E-value=90 Score=35.36 Aligned_cols=54 Identities=17% Similarity=0.015 Sum_probs=36.2
Q ss_pred HHHHHHH-hhccCCcEEEEcCCCchHHHHHHHHHHHHHhh---ccCCCcEEEEeCCCC
Q 042857 763 ALNWLRK-CWHKSKNVILADEMGLGKTVSACAFISSLYCE---FKAKLPCLVLVPLST 816 (1404)
Q Consensus 763 gVnwL~~-~~~~~~~~ILADEMGLGKTiqaIa~L~~L~~~---~~~~gP~LIVvP~Sl 816 (1404)
++..++. .+..+.-.+|+.+.|.|||..++.++...... +...++++.+.-...
T Consensus 95 ~LD~~L~GGl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~ 152 (324)
T 2z43_A 95 ALDGLLAGGIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGT 152 (324)
T ss_dssp HHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSC
T ss_pred hHHHhcCCCCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCC
Confidence 4555542 34556678899999999999998888764321 111457788877654
No 332
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=37.20 E-value=15 Score=44.02 Aligned_cols=44 Identities=23% Similarity=0.270 Sum_probs=34.5
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEeCCCChHHHHHH
Q 042857 774 SKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLSTMPNWLAE 823 (1404)
Q Consensus 774 ~~~~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP~Sll~nW~rE 823 (1404)
.+|++|....|+|||+.|-+++..+ ..||+.|....++..|.-+
T Consensus 215 prGvLLyGPPGTGKTllAkAiA~e~------~~~f~~v~~s~l~~~~vGe 258 (434)
T 4b4t_M 215 PKGALMYGPPGTGKTLLARACAAQT------NATFLKLAAPQLVQMYIGE 258 (434)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHHH------TCEEEEEEGGGGCSSCSSH
T ss_pred CCeeEEECcCCCCHHHHHHHHHHHh------CCCEEEEehhhhhhcccch
Confidence 5789999999999999988877655 3478888887777666433
No 333
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=37.11 E-value=1e+02 Score=35.65 Aligned_cols=95 Identities=17% Similarity=0.210 Sum_probs=60.1
Q ss_pred hhhHHHHHHHHHHHHH-HcCCeEEEEecchhHHHHHHHHHhhhc--CCceEEEEeCCCCHHHHHHHHHHHhcCCCceEEE
Q 042857 1069 ASAKLTLLHSMLKVLY-KEGHRVLIFSQMTKLLDILEDYLNIEF--GPKTYERVDGSVSVGDRQAAITRFNQDKSRFVFL 1145 (1404)
Q Consensus 1069 ~SgKl~~L~kLL~kl~-~~G~KVLIFSq~~~~LDiLed~L~~~f--~g~~y~rLdGs~s~~eRq~~Id~Fn~~~s~~VfL 1145 (1404)
.+||-.....++..+. ..+.++||.++....+.-..+.+...+ ++..+..++|.....++......+ .+++
T Consensus 33 G~GKT~~~~~~~~~~~~~~~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~------~ivv 106 (494)
T 1wp9_A 33 GLGKTLIAMMIAEYRLTKYGGKVLMLAPTKPLVLQHAESFRRLFNLPPEKIVALTGEKSPEERSKAWARA------KVIV 106 (494)
T ss_dssp TSCHHHHHHHHHHHHHHHSCSCEEEECSSHHHHHHHHHHHHHHBCSCGGGEEEECSCSCHHHHHHHHHHC------SEEE
T ss_pred CCCHHHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHHhCcchhheEEeeCCcchhhhhhhccCC------CEEE
Confidence 3677666555544433 468899999999888877777776654 234889999999988766554321 2344
Q ss_pred eecccccc-----cccccCCCEEEEEcCC
Q 042857 1146 LSTRSCGL-----GINLATADTVIIYDSD 1169 (1404)
Q Consensus 1146 LSTrAgG~-----GINL~~AdtVIi~Dsd 1169 (1404)
.+...... .+++...+.||+=+.+
T Consensus 107 ~T~~~l~~~~~~~~~~~~~~~~vIiDEaH 135 (494)
T 1wp9_A 107 ATPQTIENDLLAGRISLEDVSLIVFDEAH 135 (494)
T ss_dssp ECHHHHHHHHHTTSCCTTSCSEEEEETGG
T ss_pred ecHHHHHHHHhcCCcchhhceEEEEECCc
Confidence 44433321 3456667777664443
No 334
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=35.88 E-value=48 Score=37.51 Aligned_cols=26 Identities=31% Similarity=0.461 Sum_probs=22.8
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHH
Q 042857 774 SKNVILADEMGLGKTVSACAFISSLY 799 (1404)
Q Consensus 774 ~~~~ILADEMGLGKTiqaIa~L~~L~ 799 (1404)
+.+.+|..+.|+|||..+.++...+.
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~ 177 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELS 177 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHH
Confidence 57899999999999999988887765
No 335
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=35.86 E-value=66 Score=41.68 Aligned_cols=35 Identities=17% Similarity=0.270 Sum_probs=25.0
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEe
Q 042857 775 KNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLV 812 (1404)
Q Consensus 775 ~~~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVv 812 (1404)
.+.+|..+.|+|||..+-++...+.. ...|++.|-
T Consensus 589 ~~vLl~Gp~GtGKT~lA~~la~~~~~---~~~~~i~i~ 623 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELAKTLAATLFD---TEEAMIRID 623 (854)
T ss_dssp EEEEEBSCSSSSHHHHHHHHHHHHHS---SGGGEEEEC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcC---CCCcEEEEe
Confidence 36789999999999988877776642 234655543
No 336
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=35.66 E-value=8.7 Score=37.82 Aligned_cols=27 Identities=26% Similarity=0.698 Sum_probs=0.0
Q ss_pred CCCCcccccccCCCCCCCCCCCccCcccccc
Q 042857 92 SCPRTYHLQCLDPPLKRIPNGKWQCPKCTQK 122 (1404)
Q Consensus 92 ~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~ 122 (1404)
.|.-.||..|+.+.|.. .-.||.|+..
T Consensus 83 ~C~H~FH~~CI~~Wl~~----~~~CP~Cr~~ 109 (117)
T 4a0k_B 83 VCNHAFHFHCISRWLKT----RQVCPLDNRE 109 (117)
T ss_dssp -------------------------------
T ss_pred CcCceEcHHHHHHHHHc----CCcCCCCCCe
Confidence 68889999999988765 2369999865
No 337
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=35.41 E-value=66 Score=34.06 Aligned_cols=53 Identities=25% Similarity=0.249 Sum_probs=37.1
Q ss_pred ccCCcEEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEeCCCChHHHHHHHHH
Q 042857 772 HKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLSTMPNWLAEFAL 826 (1404)
Q Consensus 772 ~~~~~~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP~Sll~nW~rEf~k 826 (1404)
..+.-.+|+.+.|.|||.-++-++....... ..+++++.-.....+..+.+..
T Consensus 28 ~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~--~~~v~~~s~E~~~~~~~~~~~~ 80 (251)
T 2zts_A 28 PEGTTVLLTGGTGTGKTTFAAQFIYKGAEEY--GEPGVFVTLEERARDLRREMAS 80 (251)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHHHHHHHHH--CCCEEEEESSSCHHHHHHHHHT
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHHHHhc--CCCceeecccCCHHHHHHHHHH
Confidence 4466789999999999999888876643322 3468888776666555555543
No 338
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=34.82 E-value=16 Score=33.71 Aligned_cols=45 Identities=24% Similarity=0.482 Sum_probs=30.9
Q ss_pred cccccccccC---CCceEEcCCCCCcccccccCCCCCCCCCCCccCcccccc
Q 042857 74 YYYECVICDL---GGNLLCCDSCPRTYHLQCLDPPLKRIPNGKWQCPKCTQK 122 (1404)
Q Consensus 74 ~~~~C~~C~~---~g~ll~Cd~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~ 122 (1404)
....|.+|.. .++.+..-.|.-.||..|+...+..- -.||.|+..
T Consensus 39 ~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~----~~CP~Cr~~ 86 (91)
T 2l0b_A 39 QEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQKS----GTCPVCRCM 86 (91)
T ss_dssp SCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTTT----CBCTTTCCB
T ss_pred CCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHcC----CcCcCcCcc
Confidence 4456999964 24433333499999999998766532 379999865
No 339
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=34.50 E-value=62 Score=38.51 Aligned_cols=61 Identities=13% Similarity=0.034 Sum_probs=44.0
Q ss_pred HHHHHHHHhhccCCcEEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEeCCCChHHHHHHH
Q 042857 762 EALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLSTMPNWLAEF 824 (1404)
Q Consensus 762 egVnwL~~~~~~~~~~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP~Sll~nW~rEf 824 (1404)
.+++.+..-+..+.-.+|+...|.|||.-++.++...... ...|++++.......++...+
T Consensus 188 ~~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~--~g~~vl~~slE~~~~~l~~R~ 248 (444)
T 2q6t_A 188 KELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALK--EGVGVGIYSLEMPAAQLTLRM 248 (444)
T ss_dssp HHHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHT--TCCCEEEEESSSCHHHHHHHH
T ss_pred HhhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHh--CCCeEEEEECCCCHHHHHHHH
Confidence 4566666556677778999999999999988888776532 235788887766555555443
No 340
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=34.23 E-value=26 Score=41.92 Aligned_cols=60 Identities=25% Similarity=0.214 Sum_probs=39.1
Q ss_pred CHHHHHHHHHHHHhhcc----CCcEEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEeCCCChHHH
Q 042857 757 FPHQLEALNWLRKCWHK----SKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLSTMPNW 820 (1404)
Q Consensus 757 ~pyQlegVnwL~~~~~~----~~~~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP~Sll~nW 820 (1404)
....++.+..++..+.. +.+.+|..+.|+|||..+-++...+- ...|++.+....+...|
T Consensus 42 ~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~l~----~~~~~~~~~~~~~~~~~ 105 (456)
T 2c9o_A 42 QENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQELG----SKVPFCPMVGSEVYSTE 105 (456)
T ss_dssp CHHHHHHHHHHHHHHHTTCCTTCEEEEECCTTSSHHHHHHHHHHHHC----TTSCEEEEEGGGGCCSS
T ss_pred HHHHHHHHHHHHHHHHhCCCCCCeEEEECCCcCCHHHHHHHHHHHhC----CCceEEEEeHHHHHHHh
Confidence 34455554444444433 36799999999999999988877652 22577777665555444
No 341
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=33.54 E-value=89 Score=36.33 Aligned_cols=54 Identities=13% Similarity=0.030 Sum_probs=37.0
Q ss_pred HHHHHHH--hhccCCcEEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEeCCCChHH
Q 042857 763 ALNWLRK--CWHKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLSTMPN 819 (1404)
Q Consensus 763 gVnwL~~--~~~~~~~~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP~Sll~n 819 (1404)
.++.++. -+..+.-.+|.-+.|.|||..++.++..+.. ..++++.|.......+
T Consensus 48 ~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~~~~~---~gg~VlyId~E~s~~~ 103 (356)
T 3hr8_A 48 AIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIAEAQK---MGGVAAFIDAEHALDP 103 (356)
T ss_dssp HHHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHHHHHH---TTCCEEEEESSCCCCH
T ss_pred HHHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHHHHHh---cCCeEEEEecccccch
Confidence 4555443 3344555678899999999988888876643 3457888887766544
No 342
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=33.46 E-value=16 Score=31.88 Aligned_cols=43 Identities=21% Similarity=0.448 Sum_probs=30.1
Q ss_pred ccccccccCCC-ceEEcCCCCCcccccccCCCCCCCCCCCccCcccccc
Q 042857 75 YYECVICDLGG-NLLCCDSCPRTYHLQCLDPPLKRIPNGKWQCPKCTQK 122 (1404)
Q Consensus 75 ~~~C~~C~~~g-~ll~Cd~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~ 122 (1404)
...|.+|...- +.+.. .|.-.||..|+...+.. ...||.|+..
T Consensus 15 ~~~C~IC~~~~~~~~~~-~CgH~fC~~Ci~~~~~~----~~~CP~Cr~~ 58 (71)
T 2d8t_A 15 VPECAICLQTCVHPVSL-PCKHVFCYLCVKGASWL----GKRCALCRQE 58 (71)
T ss_dssp CCBCSSSSSBCSSEEEE-TTTEEEEHHHHHHCTTC----SSBCSSSCCB
T ss_pred CCCCccCCcccCCCEEc-cCCCHHHHHHHHHHHHC----CCcCcCcCch
Confidence 44699998743 32222 58888999999865543 2589999876
No 343
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=33.37 E-value=21 Score=42.81 Aligned_cols=44 Identities=30% Similarity=0.345 Sum_probs=34.8
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEeCCCChHHHHHH
Q 042857 774 SKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLSTMPNWLAE 823 (1404)
Q Consensus 774 ~~~~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP~Sll~nW~rE 823 (1404)
.+|.+|....|+|||+.|-+++..+ ..||+.|....++..|.-|
T Consensus 216 prGvLLyGPPGTGKTlLAkAiA~e~------~~~fi~v~~s~l~sk~vGe 259 (437)
T 4b4t_I 216 PKGVILYGAPGTGKTLLAKAVANQT------SATFLRIVGSELIQKYLGD 259 (437)
T ss_dssp CSEEEEESSTTTTHHHHHHHHHHHH------TCEEEEEESGGGCCSSSSH
T ss_pred CCCCceECCCCchHHHHHHHHHHHh------CCCEEEEEHHHhhhccCch
Confidence 4789999999999999998887665 3478888887777766444
No 344
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=33.23 E-value=7.4 Score=40.06 Aligned_cols=47 Identities=26% Similarity=0.571 Sum_probs=34.4
Q ss_pred cccccccccCC-CceEEcCCCCCcccccccCCCCCCCCCCCccCccccccc
Q 042857 74 YYYECVICDLG-GNLLCCDSCPRTYHLQCLDPPLKRIPNGKWQCPKCTQKN 123 (1404)
Q Consensus 74 ~~~~C~~C~~~-g~ll~Cd~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~~ 123 (1404)
....|.+|... .+-+.+..|.-.||..|+...+. .+...||.|+..-
T Consensus 53 ~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~---~~~~~CP~Cr~~~ 100 (165)
T 2ckl_B 53 SELMCPICLDMLKNTMTTKECLHRFCADCIITALR---SGNKECPTCRKKL 100 (165)
T ss_dssp HHHBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHH---TTCCBCTTTCCBC
T ss_pred CCCCCcccChHhhCcCEeCCCCChhHHHHHHHHHH---hCcCCCCCCCCcC
Confidence 34579999875 34555668999999999986654 2456799999763
No 345
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=32.93 E-value=8.9 Score=36.97 Aligned_cols=28 Identities=25% Similarity=0.674 Sum_probs=22.7
Q ss_pred CCCCCcccccccCCCCCCCCCCCccCcccccc
Q 042857 91 DSCPRTYHLQCLDPPLKRIPNGKWQCPKCTQK 122 (1404)
Q Consensus 91 d~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~ 122 (1404)
-.|.-.||..|+.+.|.. .-.||.|+..
T Consensus 71 ~~C~H~FH~~Ci~~Wl~~----~~~CP~Cr~~ 98 (106)
T 3dpl_R 71 GVCNHAFHFHCISRWLKT----RQVCPLDNRE 98 (106)
T ss_dssp ETTSCEEEHHHHHHHHTT----CSBCSSSCSB
T ss_pred cccCcEECHHHHHHHHHc----CCcCcCCCCc
Confidence 469999999999987664 3479999875
No 346
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=32.71 E-value=21 Score=42.64 Aligned_cols=42 Identities=24% Similarity=0.257 Sum_probs=33.1
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEeCCCChHHHH
Q 042857 774 SKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLSTMPNWL 821 (1404)
Q Consensus 774 ~~~~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP~Sll~nW~ 821 (1404)
.+|.+|....|+|||..+-+++..+ ..||+.|....++..|.
T Consensus 206 prGiLL~GPPGtGKT~lakAiA~~~------~~~~~~v~~~~l~~~~~ 247 (428)
T 4b4t_K 206 PRGVLLYGPPGTGKTMLVKAVANST------KAAFIRVNGSEFVHKYL 247 (428)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHHHH------TCEEEEEEGGGTCCSSC
T ss_pred CceEEEECCCCCCHHHHHHHHHHHh------CCCeEEEecchhhcccc
Confidence 4778999999999999998887665 34788887777766553
No 347
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=32.66 E-value=29 Score=39.19 Aligned_cols=36 Identities=22% Similarity=0.284 Sum_probs=26.0
Q ss_pred HHHHHHHhhccCCcEEEEcCCCchHHHHHHHHHHHH
Q 042857 763 ALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSL 798 (1404)
Q Consensus 763 gVnwL~~~~~~~~~~ILADEMGLGKTiqaIa~L~~L 798 (1404)
.+..+...+..+.+.+|..+.|+|||..+-++...+
T Consensus 35 ~~~~l~~~l~~~~~vll~G~pGtGKT~la~~la~~~ 70 (331)
T 2r44_A 35 MINRLLIGICTGGHILLEGVPGLAKTLSVNTLAKTM 70 (331)
T ss_dssp HHHHHHHHHHHTCCEEEESCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 344444444557899999999999998887765543
No 348
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=31.83 E-value=57 Score=35.26 Aligned_cols=36 Identities=28% Similarity=0.386 Sum_probs=25.3
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEeCCC
Q 042857 774 SKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLS 815 (1404)
Q Consensus 774 ~~~~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP~S 815 (1404)
..+.+|..+.|+|||..+-++...+ ..|++.|-...
T Consensus 45 ~~~vll~G~~GtGKT~la~~la~~~------~~~~~~i~~~~ 80 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAKAIAGEA------KVPFFTISGSD 80 (257)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH------TCCEEEECSCS
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHc------CCCEEEEeHHH
Confidence 4578999999999998877766543 23665554443
No 349
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=31.50 E-value=1.2e+02 Score=34.24 Aligned_cols=37 Identities=22% Similarity=0.229 Sum_probs=23.9
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEe
Q 042857 774 SKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLV 812 (1404)
Q Consensus 774 ~~~~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVv 812 (1404)
+.-.+|....|.|||..+..+...+.... +..++++.
T Consensus 105 g~vi~lvG~~GsGKTTl~~~LA~~l~~~~--G~~V~lv~ 141 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAKLAAISMLEK--HKKIAFIT 141 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHHHTT--CCCEEEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhc--CCEEEEEe
Confidence 44556777899999988877776664322 12455554
No 350
>3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_B*
Probab=30.97 E-value=63 Score=43.44 Aligned_cols=52 Identities=21% Similarity=0.082 Sum_probs=39.9
Q ss_pred EEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEeCCCChHHHHHHHHHHCC
Q 042857 777 VILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLSTMPNWLAEFALWAP 829 (1404)
Q Consensus 777 ~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP~Sll~nW~rEf~kw~P 829 (1404)
.|+| -.|.|||.+.+.-+.+++..+....++|++||.....+-...+....+
T Consensus 5 lV~a-gAGSGKT~~l~~ri~~ll~~~~~~~~il~lVP~q~TFt~~~rl~~~l~ 56 (1166)
T 3u4q_B 5 FLVG-RSGSGKTKLIINSIQDELRRAPFGKPIIFLVPDQMTFLMEYELAKTPD 56 (1166)
T ss_dssp EEEE-CTTSSHHHHHHHHHHHHHHHCTTSSCEEEECCGGGHHHHHHHHTCCSS
T ss_pred EEEe-CCCCChHHHHHHHHHHHHHhCCCCCcEEEEecCcccHHHHHHHHHhhh
Confidence 3444 689999999999999988775555789999999877776666655443
No 351
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=30.49 E-value=24 Score=32.52 Aligned_cols=19 Identities=32% Similarity=0.980 Sum_probs=13.2
Q ss_pred CCCCCCCCCccCcccccccc
Q 042857 105 PLKRIPNGKWQCPKCTQKND 124 (1404)
Q Consensus 105 pl~~~P~g~W~C~~C~~~~~ 124 (1404)
+...+| .+|.||.|.....
T Consensus 53 ~fedlP-ddW~CPvCga~K~ 71 (81)
T 2kn9_A 53 RWDDIP-DDWSCPDCGAAKS 71 (81)
T ss_dssp CTTTSC-TTCCCTTTCCCGG
T ss_pred ChhHCC-CCCcCCCCCCCHH
Confidence 344565 5799999987543
No 352
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=30.45 E-value=28 Score=34.43 Aligned_cols=23 Identities=26% Similarity=0.284 Sum_probs=18.6
Q ss_pred ccCCcEEEEcCCCchHHHHHHHH
Q 042857 772 HKSKNVILADEMGLGKTVSACAF 794 (1404)
Q Consensus 772 ~~~~~~ILADEMGLGKTiqaIa~ 794 (1404)
....+.+|..+.|+|||..+-++
T Consensus 25 ~~~~~vll~G~~GtGKt~lA~~i 47 (143)
T 3co5_A 25 KRTSPVFLTGEAGSPFETVARYF 47 (143)
T ss_dssp TCSSCEEEEEETTCCHHHHHGGG
T ss_pred CCCCcEEEECCCCccHHHHHHHH
Confidence 45678999999999999766443
No 353
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=30.17 E-value=7.5 Score=36.67 Aligned_cols=46 Identities=24% Similarity=0.590 Sum_probs=34.6
Q ss_pred ccccccccCC-CceEEcCCCCCcccccccCCCCCCCCCCCccCccccccc
Q 042857 75 YYECVICDLG-GNLLCCDSCPRTYHLQCLDPPLKRIPNGKWQCPKCTQKN 123 (1404)
Q Consensus 75 ~~~C~~C~~~-g~ll~Cd~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~~ 123 (1404)
...|.+|... .+-+.|-.|+-.||..|+...+..-. ..||.|+..-
T Consensus 22 ~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~~---~~CP~Cr~~~ 68 (100)
T 3lrq_A 22 VFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQR---AQCPHCRAPL 68 (100)
T ss_dssp HTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHHHTC---SBCTTTCCBC
T ss_pred CCCCccCCccccCccccCCCCChhhHHHHHHHHHHCc---CCCCCCCCcC
Confidence 3469999875 45677789999999999986554321 5799999764
No 354
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=29.97 E-value=3.3e+02 Score=32.99 Aligned_cols=33 Identities=30% Similarity=0.398 Sum_probs=23.3
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEeC
Q 042857 775 KNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVP 813 (1404)
Q Consensus 775 ~~~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP 813 (1404)
.+.+|..+.|+|||..+-++...+ ..|++.+..
T Consensus 65 ~GvLL~GppGtGKTtLaraIa~~~------~~~~i~i~g 97 (499)
T 2dhr_A 65 KGVLLVGPPGVGKTHLARAVAGEA------RVPFITASG 97 (499)
T ss_dssp SEEEEECSSSSSHHHHHHHHHHHT------TCCEEEEEG
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh------CCCEEEEeh
Confidence 568999999999998876665433 245655543
No 355
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=29.91 E-value=85 Score=44.53 Aligned_cols=57 Identities=12% Similarity=0.033 Sum_probs=45.4
Q ss_pred HHHHHHHH--hhccCCcEEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEeCCCChHHHH
Q 042857 762 EALNWLRK--CWHKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLSTMPNWL 821 (1404)
Q Consensus 762 egVnwL~~--~~~~~~~~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP~Sll~nW~ 821 (1404)
..+.+++. -+..+.-.+|+.+.|.|||.-++.++..+.. ..++++++.-.....+|.
T Consensus 718 ~eLD~llggGGl~~G~lilIaG~PG~GKTtLalqlA~~~a~---~g~~VlyiS~Ees~~ql~ 776 (2050)
T 3cmu_A 718 LSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQR---EGKTCAFIDAEHALDPIY 776 (2050)
T ss_dssp HHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHT---TTCCEEEECTTSCCCHHH
T ss_pred hHHHHHhccCCcCCCcEEEEEcCCCCCHHHHHHHHHHHHHh---cCCcEEEEECCCcHHHHH
Confidence 35666765 5667788899999999999999988887653 245899999888888885
No 356
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=29.54 E-value=11 Score=32.40 Aligned_cols=44 Identities=36% Similarity=0.791 Sum_probs=31.2
Q ss_pred ccccccccCC-------CceEEcCCCCCcccccccCCCCCCCCCCCccCcccccc
Q 042857 75 YYECVICDLG-------GNLLCCDSCPRTYHLQCLDPPLKRIPNGKWQCPKCTQK 122 (1404)
Q Consensus 75 ~~~C~~C~~~-------g~ll~Cd~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~ 122 (1404)
...|.+|... +..+..-.|.-.||..|+...+.. ...||.|+..
T Consensus 15 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~----~~~CP~Cr~~ 65 (69)
T 2ea6_A 15 TVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN----ANTCPTCRKK 65 (69)
T ss_dssp CCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHH----CSSCTTTCCC
T ss_pred CCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHc----CCCCCCCCCc
Confidence 4469999763 334455689999999999865443 2369999865
No 357
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=29.42 E-value=20 Score=43.24 Aligned_cols=45 Identities=20% Similarity=0.304 Sum_probs=34.8
Q ss_pred cCCcEEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEeCCCChHHHHHH
Q 042857 773 KSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLSTMPNWLAE 823 (1404)
Q Consensus 773 ~~~~~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP~Sll~nW~rE 823 (1404)
..+|.||....|+|||+.|-+++..+ ..||+.|....++..|.-|
T Consensus 242 pprGILLyGPPGTGKTlLAkAiA~e~------~~~fi~vs~s~L~sk~vGe 286 (467)
T 4b4t_H 242 PPKGILLYGPPGTGKTLCARAVANRT------DATFIRVIGSELVQKYVGE 286 (467)
T ss_dssp CCSEEEECSCTTSSHHHHHHHHHHHH------TCEEEEEEGGGGCCCSSSH
T ss_pred CCCceEeeCCCCCcHHHHHHHHHhcc------CCCeEEEEhHHhhcccCCH
Confidence 45789999999999999988887655 3478888887777666443
No 358
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=29.10 E-value=13 Score=32.32 Aligned_cols=44 Identities=25% Similarity=0.511 Sum_probs=30.8
Q ss_pred ccccccccCCCceEEcCCCCCcccccccCCCCCCCCCCCccCccccccc
Q 042857 75 YYECVICDLGGNLLCCDSCPRTYHLQCLDPPLKRIPNGKWQCPKCTQKN 123 (1404)
Q Consensus 75 ~~~C~~C~~~g~ll~Cd~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~~ 123 (1404)
...|.+|...-.- .--.|.-.||..|+...+. ....||.|+..-
T Consensus 15 ~~~C~IC~~~~~~-~~~~CgH~fc~~Ci~~~~~----~~~~CP~Cr~~~ 58 (70)
T 2ecn_A 15 EEECCICMDGRAD-LILPCAHSFCQKCIDKWSD----RHRNCPICRLQM 58 (70)
T ss_dssp CCCCSSSCCSCCS-EEETTTEEECHHHHHHSSC----CCSSCHHHHHCT
T ss_pred CCCCeeCCcCccC-cccCCCCcccHHHHHHHHH----CcCcCCCcCCcc
Confidence 4469999875322 2336888899999987655 356899998653
No 359
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=29.03 E-value=77 Score=44.99 Aligned_cols=53 Identities=11% Similarity=0.027 Sum_probs=38.7
Q ss_pred hccCCcEEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEeCCCChHHHHHHHHHHC
Q 042857 771 WHKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLSTMPNWLAEFALWA 828 (1404)
Q Consensus 771 ~~~~~~~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP~Sll~nW~rEf~kw~ 828 (1404)
+..+.+.+|.-..|.|||..+++++..... ..+.++++.....+..-. .+.|.
T Consensus 1424 i~~g~~vll~GppGtGKT~LA~ala~ea~~---~G~~v~Fi~~e~~~~~l~--a~~~G 1476 (2050)
T 3cmu_A 1424 LPMGRIVEIYGPESSGKTTLTLQVIAAAQR---EGKTCAFIDAEHALDPIY--ARKLG 1476 (2050)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHHHHT---TTCCEEEECTTSCCCHHH--HHHTT
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHHH---cCCcEEEEEcccccCHHH--HHHcC
Confidence 456788999999999999999999887653 244678888776654333 45554
No 360
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=28.76 E-value=1e+02 Score=41.23 Aligned_cols=98 Identities=13% Similarity=0.062 Sum_probs=68.0
Q ss_pred hhhHHHHHHHHHHHHHHcCCeEEEEecchhHHHHHHHHHhhh-cCCceEEEEeCCCCHHHHHHHHHHHhcCCCceEEEee
Q 042857 1069 ASAKLTLLHSMLKVLYKEGHRVLIFSQMTKLLDILEDYLNIE-FGPKTYERVDGSVSVGDRQAAITRFNQDKSRFVFLLS 1147 (1404)
Q Consensus 1069 ~SgKl~~L~kLL~kl~~~G~KVLIFSq~~~~LDiLed~L~~~-f~g~~y~rLdGs~s~~eRq~~Id~Fn~~~s~~VfLLS 1147 (1404)
.|||-.+..-.+......|.++||.++.+..+..+.+.|... +.++.+..++|+++..+|...+..+..+... +|++
T Consensus 103 GSGKTl~~l~~il~~~~~~~~~Lil~PtreLa~Q~~~~l~~l~~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~--IlV~ 180 (1104)
T 4ddu_A 103 GVGKTTFGMMTALWLARKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYH--ILVF 180 (1104)
T ss_dssp TCCHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHTTSCTTSCEEEECTTCCTTHHHHHHHHHHTSCCS--EEEE
T ss_pred CCcHHHHHHHHHHHHHhcCCeEEEEechHHHHHHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHHhCCCCC--EEEE
Confidence 478877665655556678899999999999888777777752 1367899999999988888888888765444 4444
Q ss_pred cc-cccc---cccccCCCEEEEEcC
Q 042857 1148 TR-SCGL---GINLATADTVIIYDS 1168 (1404)
Q Consensus 1148 Tr-AgG~---GINL~~AdtVIi~Ds 1168 (1404)
|. ..-. -+++...+.||+=+.
T Consensus 181 Tp~rL~~~l~~l~~~~l~~lViDEa 205 (1104)
T 4ddu_A 181 STQFVSKNREKLSQKRFDFVFVDDV 205 (1104)
T ss_dssp EHHHHHHSHHHHHTSCCSEEEESCH
T ss_pred CHHHHHHHHHhhcccCcCEEEEeCC
Confidence 42 2211 144566777766443
No 361
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=28.36 E-value=1.4e+02 Score=33.39 Aligned_cols=55 Identities=15% Similarity=-0.001 Sum_probs=35.6
Q ss_pred HHHHHHHH-hhccCCcEEEEcCCCchHHHHHHHHHHHHHhhc---------cCC----CcEEEEeCCCC
Q 042857 762 EALNWLRK-CWHKSKNVILADEMGLGKTVSACAFISSLYCEF---------KAK----LPCLVLVPLST 816 (1404)
Q Consensus 762 egVnwL~~-~~~~~~~~ILADEMGLGKTiqaIa~L~~L~~~~---------~~~----gP~LIVvP~Sl 816 (1404)
.++++++. -+..+.-.+|+.+.|.|||..++.++....... ... ++++.|.-...
T Consensus 85 ~~LD~~l~GGl~~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~ 153 (322)
T 2i1q_A 85 SELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGT 153 (322)
T ss_dssp HHHHHHTTSSEETTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSC
T ss_pred hhHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCC
Confidence 35555553 334455678999999999999988887532111 111 57888876655
No 362
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=28.12 E-value=98 Score=36.88 Aligned_cols=59 Identities=14% Similarity=0.165 Sum_probs=42.9
Q ss_pred HHHHHHHhhccCCcEEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEeCCCChHHHHHH
Q 042857 763 ALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLSTMPNWLAE 823 (1404)
Q Consensus 763 gVnwL~~~~~~~~~~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP~Sll~nW~rE 823 (1404)
+++.+...+..|.-.+|+...|.|||.-++.++..+.... ..|++++.......++...
T Consensus 192 ~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~--g~~Vl~~s~E~s~~~l~~r 250 (454)
T 2r6a_A 192 ELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKT--NENVAIFSLEMSAQQLVMR 250 (454)
T ss_dssp HHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHS--SCCEEEEESSSCHHHHHHH
T ss_pred HHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhC--CCcEEEEECCCCHHHHHHH
Confidence 5666666677778889999999999999888887765432 3478888876555555444
No 363
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=28.01 E-value=25 Score=30.54 Aligned_cols=46 Identities=22% Similarity=0.473 Sum_probs=32.2
Q ss_pred ccccccccCCC-ceEEcCCCCCcccccccCCCCCCCCCCCccCcccccc
Q 042857 75 YYECVICDLGG-NLLCCDSCPRTYHLQCLDPPLKRIPNGKWQCPKCTQK 122 (1404)
Q Consensus 75 ~~~C~~C~~~g-~ll~Cd~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~ 122 (1404)
...|.+|...- +-+.. .|.-.||..|+...+.. ..+...||.|+..
T Consensus 20 ~~~C~IC~~~~~~~~~~-~CgH~fC~~Ci~~~~~~-~~~~~~CP~Cr~~ 66 (73)
T 2ysl_A 20 EVICPICLDILQKPVTI-DCGHNFCLKCITQIGET-SCGFFKCPLCKTS 66 (73)
T ss_dssp CCBCTTTCSBCSSEEEC-TTCCEEEHHHHHHHCSS-SCSCCCCSSSCCC
T ss_pred CCEeccCCcccCCeEEc-CCCChhhHHHHHHHHHc-CCCCCCCCCCCCc
Confidence 45699998753 32223 79999999999876542 2345689999876
No 364
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=27.74 E-value=2.8e+02 Score=25.55 Aligned_cols=98 Identities=13% Similarity=0.016 Sum_probs=53.5
Q ss_pred HHHHHcCCeEEEEecchhHHHHHHHHHhhhcCCceEEEEeCCCCHHHHHHHHHHHhcC---CCceEEEeecccccccccc
Q 042857 1081 KVLYKEGHRVLIFSQMTKLLDILEDYLNIEFGPKTYERVDGSVSVGDRQAAITRFNQD---KSRFVFLLSTRSCGLGINL 1157 (1404)
Q Consensus 1081 ~kl~~~G~KVLIFSq~~~~LDiLed~L~~~f~g~~y~rLdGs~s~~eRq~~Id~Fn~~---~s~~VfLLSTrAgG~GINL 1157 (1404)
..+...|..|..+......+..+.. . .+....+|-.++...-.+.+...+.. ....+++++...-..-...
T Consensus 21 ~~~l~~~~~v~~~~~~~~a~~~l~~----~--~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~~pii~~s~~~~~~~~~~ 94 (133)
T 3nhm_A 21 RLLLSGEFDCTTAADGASGLQQALA----H--PPDVLISDVNMDGMDGYALCGHFRSEPTLKHIPVIFVSGYAPRTEGPA 94 (133)
T ss_dssp HHHHTTTSEEEEESSHHHHHHHHHH----S--CCSEEEECSSCSSSCHHHHHHHHHHSTTTTTCCEEEEESCCC-----T
T ss_pred HHHHhCCcEEEEECCHHHHHHHHhc----C--CCCEEEEeCCCCCCCHHHHHHHHHhCCccCCCCEEEEeCCCcHhHHHH
Confidence 3344467787777766666555432 2 45677787666554445555555542 2334555554332111222
Q ss_pred c--CCCEEEEEcCCCCHhHHHHHHHhhhccC
Q 042857 1158 A--TADTVIIYDSDFNPHADIQAMNRAHRIG 1186 (1404)
Q Consensus 1158 ~--~AdtVIi~DsdWNP~~d~QAigRahRiG 1186 (1404)
. .|+. ++--++++....+++.++-+-+
T Consensus 95 ~~~g~~~--~l~KP~~~~~l~~~i~~~l~~~ 123 (133)
T 3nhm_A 95 DQPVPDA--YLVKPVKPPVLIAQLHALLARA 123 (133)
T ss_dssp TSCCCSE--EEESSCCHHHHHHHHHHHHHHH
T ss_pred hhcCCce--EEeccCCHHHHHHHHHHHHhhh
Confidence 1 2333 3446888998888888776543
No 365
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=27.32 E-value=95 Score=41.33 Aligned_cols=69 Identities=10% Similarity=0.084 Sum_probs=52.0
Q ss_pred hhhHHHHHHHHHHHHHHcCCeEEEEecchhHHHHHHHHHhhhcC--Cc----eEEEEeCCCCHHHHHHHHHHHhc
Q 042857 1069 ASAKLTLLHSMLKVLYKEGHRVLIFSQMTKLLDILEDYLNIEFG--PK----TYERVDGSVSVGDRQAAITRFNQ 1137 (1404)
Q Consensus 1069 ~SgKl~~L~kLL~kl~~~G~KVLIFSq~~~~LDiLed~L~~~f~--g~----~y~rLdGs~s~~eRq~~Id~Fn~ 1137 (1404)
.|||-.++.-++..+...|.++||.++....+..+.+.+...+. +. .+..++|+++...+...++.+..
T Consensus 81 GSGKTl~~lp~l~~~~~~~~~~lil~PtreLa~Q~~~~l~~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~ 155 (1054)
T 1gku_B 81 GVGKTSFGLAMSLFLALKGKRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRN 155 (1054)
T ss_dssp TSCSHHHHHHHHHHHHTTSCCEEEEESCHHHHHHHHHHHHHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG
T ss_pred CCCHHHHHHHHHHHHhhcCCeEEEEeccHHHHHHHHHHHHHHHhhcCCCccceEEEEeCCCChhhHHHHHhhccC
Confidence 47777666666777777889999999999877666666654322 45 78899999998888777777765
No 366
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=26.88 E-value=96 Score=32.69 Aligned_cols=52 Identities=17% Similarity=0.105 Sum_probs=36.2
Q ss_pred hccCCcEEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEeCCCChHHHHHHHH
Q 042857 771 WHKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLSTMPNWLAEFA 825 (1404)
Q Consensus 771 ~~~~~~~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP~Sll~nW~rEf~ 825 (1404)
+..+.-.+|+.+.|.|||..++.++..+... .++++++.......+..+.+.
T Consensus 20 l~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~---~~~v~~~~~e~~~~~~~~~~~ 71 (247)
T 2dr3_A 20 IPERNVVLLSGGPGTGKTIFSQQFLWNGLKM---GEPGIYVALEEHPVQVRQNMA 71 (247)
T ss_dssp EETTCEEEEEECTTSSHHHHHHHHHHHHHHT---TCCEEEEESSSCHHHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHHHhc---CCeEEEEEccCCHHHHHHHHH
Confidence 3456677899999999999988887776532 356788776655555444443
No 367
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=26.57 E-value=19 Score=32.23 Aligned_cols=46 Identities=20% Similarity=0.450 Sum_probs=31.8
Q ss_pred cccccccccCCC-ceEEcCCCCCcccccccCCCCCCCCCCCccCcccccccc
Q 042857 74 YYYECVICDLGG-NLLCCDSCPRTYHLQCLDPPLKRIPNGKWQCPKCTQKND 124 (1404)
Q Consensus 74 ~~~~C~~C~~~g-~ll~Cd~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~~~ 124 (1404)
....|.+|...- +-+. -.|.-.||..|+...+.. ...||.|+..-.
T Consensus 14 ~~~~C~IC~~~~~~p~~-~~CgH~fC~~Ci~~~~~~----~~~CP~Cr~~~~ 60 (81)
T 2csy_A 14 IPFRCFICRQAFQNPVV-TKCRHYFCESCALEHFRA----TPRCYICDQPTG 60 (81)
T ss_dssp CCSBCSSSCSBCCSEEE-CTTSCEEEHHHHHHHHHH----CSBCSSSCCBCC
T ss_pred CCCCCcCCCchhcCeeE-ccCCCHhHHHHHHHHHHC----CCcCCCcCcccc
Confidence 345799998753 2222 479989999999765432 347999997753
No 368
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=26.56 E-value=92 Score=43.52 Aligned_cols=55 Identities=13% Similarity=0.051 Sum_probs=41.3
Q ss_pred HHHHHHH--hhccCCcEEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEeCCCChHHH
Q 042857 763 ALNWLRK--CWHKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLSTMPNW 820 (1404)
Q Consensus 763 gVnwL~~--~~~~~~~~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP~Sll~nW 820 (1404)
.++.++. -+..+...+|+.+.|.|||..++.++..+.. ..++++++.-.....+-
T Consensus 719 eLD~lLg~GGl~~G~lVlI~G~PG~GKTtLal~lA~~aa~---~g~~VlyiS~Ees~~ql 775 (1706)
T 3cmw_A 719 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQR---EGKTCAFIDAEHALDPI 775 (1706)
T ss_dssp HHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHH---TTCCEEEECTTSCCCHH
T ss_pred HHHHHhccCCcCCCceEEEECCCCCCcHHHHHHHHHHHHH---cCCCeEEEeccchHHHH
Confidence 5666664 5677888999999999999999998887653 23478888766655543
No 369
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=26.05 E-value=72 Score=36.56 Aligned_cols=36 Identities=25% Similarity=0.323 Sum_probs=26.6
Q ss_pred cCCcEEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEeCC
Q 042857 773 KSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPL 814 (1404)
Q Consensus 773 ~~~~~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP~ 814 (1404)
...+.+|..+.|+|||..+-++...+ ..|++.+-..
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~~~------~~~~~~~~~~ 85 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLARLL------DVPFTMADAT 85 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHT------TCCEEEEEHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHc------CCCEEEechH
Confidence 35689999999999999887776554 3577666443
No 370
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=25.98 E-value=48 Score=36.64 Aligned_cols=35 Identities=17% Similarity=0.270 Sum_probs=25.4
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEe
Q 042857 775 KNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLV 812 (1404)
Q Consensus 775 ~~~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVv 812 (1404)
...+|..+.|.|||..+-++...+.. ..+|++.+-
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~~~---~~~~~~~~~ 82 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATLFD---TEEAMIRID 82 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHHHS---CGGGEEEEE
T ss_pred eEEEEECCCCcCHHHHHHHHHHHHcC---CCcceEEee
Confidence 36899999999999988877766532 234665554
No 371
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=25.70 E-value=41 Score=43.48 Aligned_cols=41 Identities=20% Similarity=0.211 Sum_probs=27.7
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEeCCCChHHH
Q 042857 774 SKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLSTMPNW 820 (1404)
Q Consensus 774 ~~~~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP~Sll~nW 820 (1404)
.++++|....|+|||..+=++...+ ..+++.|-...++..|
T Consensus 238 p~GILL~GPPGTGKT~LAraiA~el------g~~~~~v~~~~l~sk~ 278 (806)
T 3cf2_A 238 PRGILLYGPPGTGKTLIARAVANET------GAFFFLINGPEIMSKL 278 (806)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHTTT------TCEEEEEEHHHHHSSC
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHh------CCeEEEEEhHHhhccc
Confidence 4688999999999998887665432 3456655544444443
No 372
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=25.64 E-value=48 Score=27.57 Aligned_cols=43 Identities=23% Similarity=0.492 Sum_probs=26.9
Q ss_pred cccccccccCCCceEEcCCCCCcccccccCCCCCCCCCCCccCccccccc
Q 042857 74 YYYECVICDLGGNLLCCDSCPRTYHLQCLDPPLKRIPNGKWQCPKCTQKN 123 (1404)
Q Consensus 74 ~~~~C~~C~~~g~ll~Cd~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~~ 123 (1404)
....|.+|...-.--.--.|.-.|+..|+.. ....||.|+...
T Consensus 5 ~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~-------~~~~CP~Cr~~~ 47 (56)
T 1bor_A 5 QFLRCQQCQAEAKCPKLLPCLHTLCSGCLEA-------SGMQCPICQAPW 47 (56)
T ss_dssp CCSSCSSSCSSCBCCSCSTTSCCSBTTTCSS-------SSSSCSSCCSSS
T ss_pred cCCCceEeCCccCCeEEcCCCCcccHHHHcc-------CCCCCCcCCcEe
Confidence 3456999976432111124777788888764 345799998763
No 373
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=25.63 E-value=4e+02 Score=28.44 Aligned_cols=131 Identities=12% Similarity=0.196 Sum_probs=69.4
Q ss_pred hhhHHHH-HHHHHHHHHHc--CCeEEEEecchhHHHHHHHHHhhhc--CCceEEEEeCCCCHHHHHHHHHHHhcCCCceE
Q 042857 1069 ASAKLTL-LHSMLKVLYKE--GHRVLIFSQMTKLLDILEDYLNIEF--GPKTYERVDGSVSVGDRQAAITRFNQDKSRFV 1143 (1404)
Q Consensus 1069 ~SgKl~~-L~kLL~kl~~~--G~KVLIFSq~~~~LDiLed~L~~~f--~g~~y~rLdGs~s~~eRq~~Id~Fn~~~s~~V 1143 (1404)
.|||-.. +.-++..+... +.++||.+.....+.-+.+.+.... .++.+..+.|+.....+...+. . +..
T Consensus 90 GsGKT~~~~~~il~~l~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~---~-~~~-- 163 (249)
T 3ber_A 90 GSGKTGAFALPILNALLETPQRLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALA---K-KPH-- 163 (249)
T ss_dssp TSCHHHHHHHHHHHHHHHSCCSSCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHHH---T-CCS--
T ss_pred CCCchhHhHHHHHHHHhcCCCCceEEEEeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHhc---C-CCC--
Confidence 4677654 44445555444 4579999999877665555554321 2677888999887655433332 1 222
Q ss_pred EEeecc-cc------cccccccCCCEEEEEcCC----CCHhHHHHHHHhhhccCCCCcEEEEEEeeCCCHHHHHHHHHH
Q 042857 1144 FLLSTR-SC------GLGINLATADTVIIYDSD----FNPHADIQAMNRAHRIGQSKRLLVYRLVVRASVEERILQLAK 1211 (1404)
Q Consensus 1144 fLLSTr-Ag------G~GINL~~AdtVIi~Dsd----WNP~~d~QAigRahRiGQ~k~V~VYrLvt~~TvEE~Ilq~a~ 1211 (1404)
++++|- .. ..++++...+.||+=+.+ |+....+..+-+..+ +.. ..++...|+...+.+.++
T Consensus 164 I~v~Tp~~l~~~l~~~~~~~l~~~~~lViDEah~l~~~~~~~~l~~i~~~~~----~~~--~~l~~SAT~~~~v~~~~~ 236 (249)
T 3ber_A 164 IIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIP----RDR--KTFLFSATMTKKVQKLQR 236 (249)
T ss_dssp EEEECHHHHHHHHHHSTTCCCTTCCEEEECSHHHHHHTTCHHHHHHHHHSSC----SSS--EEEEEESSCCHHHHHHHH
T ss_pred EEEECHHHHHHHHHcCCCcCccccCEEEEcChhhhhccChHHHHHHHHHhCC----CCC--eEEEEeccCCHHHHHHHH
Confidence 445542 11 234667777777664433 433333444433221 122 234455666555555443
No 374
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=25.43 E-value=8.8 Score=32.43 Aligned_cols=44 Identities=36% Similarity=0.804 Sum_probs=31.0
Q ss_pred ccccccccCC-------CceEEcCCCCCcccccccCCCCCCCCCCCccCcccccc
Q 042857 75 YYECVICDLG-------GNLLCCDSCPRTYHLQCLDPPLKRIPNGKWQCPKCTQK 122 (1404)
Q Consensus 75 ~~~C~~C~~~-------g~ll~Cd~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~ 122 (1404)
...|.+|... ++.+..-.|.-.||..|+...+.. ...||.|+..
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~----~~~CP~Cr~~ 53 (64)
T 2xeu_A 3 MVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN----ANTCPTCRKK 53 (64)
T ss_dssp CCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHH----CSBCTTTCCB
T ss_pred CCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHc----CCCCCCCCcc
Confidence 3468888763 234445579999999999865443 3479999865
No 375
>2k1p_A Zinc finger RAN-binding domain-containing protein 2; ZNF265, RNA binding, ranbp2, RBZ, ZIS, alternative splicing, metal-binding, mRNA processing; NMR {Homo sapiens} PDB: 3g9y_A
Probab=25.42 E-value=24 Score=26.95 Aligned_cols=13 Identities=31% Similarity=1.048 Sum_probs=10.6
Q ss_pred CCCCccCcccccc
Q 042857 110 PNGKWQCPKCTQK 122 (1404)
Q Consensus 110 P~g~W~C~~C~~~ 122 (1404)
..|+|.|+.|..-
T Consensus 3 ~~gDW~C~~C~~~ 15 (33)
T 2k1p_A 3 SANDWQCKTCSNV 15 (33)
T ss_dssp SSSSCBCSSSCCB
T ss_pred CCCCcccCCCCCc
Confidence 4699999999754
No 376
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=25.28 E-value=30 Score=30.44 Aligned_cols=47 Identities=23% Similarity=0.535 Sum_probs=32.4
Q ss_pred cccccccccCCC-ceEEcCCCCCcccccccCCCCCCCCCCCccCcccccc
Q 042857 74 YYYECVICDLGG-NLLCCDSCPRTYHLQCLDPPLKRIPNGKWQCPKCTQK 122 (1404)
Q Consensus 74 ~~~~C~~C~~~g-~ll~Cd~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~ 122 (1404)
....|.+|...- +-+.-..|.-.||..|+...+... +...||.|+..
T Consensus 14 ~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~--~~~~CP~Cr~~ 61 (74)
T 2yur_A 14 DELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLES--DEHTCPTCHQN 61 (74)
T ss_dssp GGGSCSSSCCCCTTCEECSSSCCEECTTHHHHHHHHS--SSSCCSSSCCS
T ss_pred CCCCCcCCChHHhCCeEcCCCCCHHHHHHHHHHHHhc--CCCcCCCCCCc
Confidence 455799998742 333344599999999998665431 34579999875
No 377
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=25.26 E-value=1.6e+02 Score=30.04 Aligned_cols=93 Identities=14% Similarity=0.150 Sum_probs=56.6
Q ss_pred hhhHHHH-HHHHHHHHH-----HcCCeEEEEecchhHHHHHHHHHhhhcCCceEEEEeCCCCHHHHHHHHHHHhcCCCce
Q 042857 1069 ASAKLTL-LHSMLKVLY-----KEGHRVLIFSQMTKLLDILEDYLNIEFGPKTYERVDGSVSVGDRQAAITRFNQDKSRF 1142 (1404)
Q Consensus 1069 ~SgKl~~-L~kLL~kl~-----~~G~KVLIFSq~~~~LDiLed~L~~~f~g~~y~rLdGs~s~~eRq~~Id~Fn~~~s~~ 1142 (1404)
.+||... +.-++..+. ..+.++||.++....+.-+.+.+...++.+.+..+.|+.........+.. +..
T Consensus 48 GsGKT~~~~~~~~~~l~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~- 122 (207)
T 2gxq_A 48 GTGKTLAFALPIAERLAPSQERGRKPRALVLTPTRELALQVASELTAVAPHLKVVAVYGGTGYGKQKEALLR----GAD- 122 (207)
T ss_dssp TSCHHHHHHHHHHHHCCCCCCTTCCCSEEEECSSHHHHHHHHHHHHHHCTTSCEEEECSSSCSHHHHHHHHH----CCS-
T ss_pred CChHHHHHHHHHHHHHhhccccCCCCcEEEEECCHHHHHHHHHHHHHHhhcceEEEEECCCChHHHHHHhhC----CCC-
Confidence 4677755 444444443 34678999999988888888888776666788888888775544333321 122
Q ss_pred EEEeecc-cc-----cccccccCCCEEEEEc
Q 042857 1143 VFLLSTR-SC-----GLGINLATADTVIIYD 1167 (1404)
Q Consensus 1143 VfLLSTr-Ag-----G~GINL~~AdtVIi~D 1167 (1404)
++++|. .. ...+++...+.||+=+
T Consensus 123 -i~v~T~~~l~~~~~~~~~~~~~~~~iViDE 152 (207)
T 2gxq_A 123 -AVVATPGRALDYLRQGVLDLSRVEVAVLDE 152 (207)
T ss_dssp -EEEECHHHHHHHHHHTSSCCTTCSEEEEES
T ss_pred -EEEECHHHHHHHHHcCCcchhhceEEEEEC
Confidence 444442 11 1234566677666643
No 378
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=25.10 E-value=1.6e+02 Score=36.05 Aligned_cols=26 Identities=38% Similarity=0.377 Sum_probs=20.4
Q ss_pred cCCcEEEEcCCCchHHHHHHHHHHHH
Q 042857 773 KSKNVILADEMGLGKTVSACAFISSL 798 (1404)
Q Consensus 773 ~~~~~ILADEMGLGKTiqaIa~L~~L 798 (1404)
.+...+|..+.|.|||..+-++...+
T Consensus 107 ~g~~vll~Gp~GtGKTtlar~ia~~l 132 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLAKSIAKSL 132 (543)
T ss_dssp CSCEEEEESSSSSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 35678899999999998877665544
No 379
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=24.74 E-value=1.7e+02 Score=27.06 Aligned_cols=95 Identities=8% Similarity=-0.090 Sum_probs=53.1
Q ss_pred HcCCeEEEEecchhHHHHHHHHHhhhcCCceEEEEeCCCCHHHHHHHHHHHhcC---CCceEEEeecccccccccc--cC
Q 042857 1085 KEGHRVLIFSQMTKLLDILEDYLNIEFGPKTYERVDGSVSVGDRQAAITRFNQD---KSRFVFLLSTRSCGLGINL--AT 1159 (1404)
Q Consensus 1085 ~~G~KVLIFSq~~~~LDiLed~L~~~f~g~~y~rLdGs~s~~eRq~~Id~Fn~~---~s~~VfLLSTrAgG~GINL--~~ 1159 (1404)
..|..|..+......++.+.. . .+....+|-.++...-.+.+..++.. ....+++++......-... ..
T Consensus 25 ~~g~~v~~~~~~~~a~~~l~~----~--~~dlii~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~~~~~~~~~~~~g 98 (127)
T 3i42_A 25 MLGFQADYVMSGTDALHAMST----R--GYDAVFIDLNLPDTSGLALVKQLRALPMEKTSKFVAVSGFAKNDLGKEACEL 98 (127)
T ss_dssp HTTEEEEEESSHHHHHHHHHH----S--CCSEEEEESBCSSSBHHHHHHHHHHSCCSSCCEEEEEECC-CTTCCHHHHHH
T ss_pred HcCCCEEEECCHHHHHHHHHh----c--CCCEEEEeCCCCCCCHHHHHHHHHhhhccCCCCEEEEECCcchhHHHHHHHh
Confidence 347777777766665555532 2 45677788666554445555555543 3344555554332221221 12
Q ss_pred CCEEEEEcCCCCHhHHHHHHHhhhccCC
Q 042857 1160 ADTVIIYDSDFNPHADIQAMNRAHRIGQ 1187 (1404)
Q Consensus 1160 AdtVIi~DsdWNP~~d~QAigRahRiGQ 1187 (1404)
|+. ++--|+++....+++.++++-++
T Consensus 99 ~~~--~l~KP~~~~~L~~~i~~~~~~~~ 124 (127)
T 3i42_A 99 FDF--YLEKPIDIASLEPILQSIEGHHH 124 (127)
T ss_dssp CSE--EEESSCCHHHHHHHHHHHC----
T ss_pred hHH--heeCCCCHHHHHHHHHHhhccCC
Confidence 444 45568899999999998887654
No 380
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=24.71 E-value=11 Score=32.57 Aligned_cols=45 Identities=36% Similarity=0.750 Sum_probs=32.2
Q ss_pred ccccccccCC-------CceEEcCCCCCcccccccCCCCCCCCCCCccCccccccc
Q 042857 75 YYECVICDLG-------GNLLCCDSCPRTYHLQCLDPPLKRIPNGKWQCPKCTQKN 123 (1404)
Q Consensus 75 ~~~C~~C~~~-------g~ll~Cd~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~~ 123 (1404)
...|.+|... ++.+..-.|.-.||..|+...+..- -.||.|+..-
T Consensus 10 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~----~~CP~Cr~~~ 61 (71)
T 3ng2_A 10 TVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA----NTCPTCRKKI 61 (71)
T ss_dssp CCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHC----SBCTTTCCBC
T ss_pred CCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcC----CCCCCCCCcc
Confidence 4469999763 3455566899999999998654332 3799998763
No 381
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.33 E-value=16 Score=31.37 Aligned_cols=44 Identities=20% Similarity=0.487 Sum_probs=30.3
Q ss_pred ccccccccCCCc-eEEcCCCCCcccccccCCCCCCCCCCCccCcccccc
Q 042857 75 YYECVICDLGGN-LLCCDSCPRTYHLQCLDPPLKRIPNGKWQCPKCTQK 122 (1404)
Q Consensus 75 ~~~C~~C~~~g~-ll~Cd~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~ 122 (1404)
...|.+|...-. -+. -.|.-.||..|+...+. .+...||.|+..
T Consensus 15 ~~~C~IC~~~~~~p~~-~~CgH~fC~~Ci~~~~~---~~~~~CP~Cr~~ 59 (66)
T 2ecy_A 15 KYKCEKCHLVLCSPKQ-TECGHRFCESCMAALLS---SSSPKCTACQES 59 (66)
T ss_dssp CEECTTTCCEESSCCC-CSSSCCCCHHHHHHHHT---TSSCCCTTTCCC
T ss_pred CCCCCCCChHhcCeeE-CCCCCHHHHHHHHHHHH---hCcCCCCCCCcC
Confidence 456999976421 111 37888899999987654 345679999875
No 382
>3sxu_A DNA polymerase III subunit CHI; DNA replication, CHI binds to SSB and PSI, transferase; HET: DNA; 1.85A {Escherichia coli} SCOP: c.128.1.1 PDB: 1em8_A*
Probab=23.66 E-value=74 Score=32.46 Aligned_cols=40 Identities=28% Similarity=0.254 Sum_probs=35.7
Q ss_pred hhHHHHHHHHHHHHHHcCCeEEEEecchhHHHHHHHHHhh
Q 042857 1070 SAKLTLLHSMLKVLYKEGHRVLIFSQMTKLLDILEDYLNI 1109 (1404)
Q Consensus 1070 SgKl~~L~kLL~kl~~~G~KVLIFSq~~~~LDiLed~L~~ 1109 (1404)
..++.+..+|+.+....|+||+|++.....++.|.+.|=.
T Consensus 22 ~~~~~~aCrL~~ka~~~G~rv~V~~~d~~~a~~LD~~LW~ 61 (150)
T 3sxu_A 22 SAVEQLVCEIAAERWRSGKRVLIACEDEKQAYRLDEALWA 61 (150)
T ss_dssp CHHHHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTTT
T ss_pred hHHHHHHHHHHHHHHHcCCeEEEECCCHHHHHHHHHHHhC
Confidence 3567889999999999999999999999999999999853
No 383
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.33 E-value=25 Score=30.70 Aligned_cols=48 Identities=25% Similarity=0.449 Sum_probs=33.2
Q ss_pred cccccccccCCC-ceEEcCCCCCcccccccCCCCCCCCCCCccCccccccccc
Q 042857 74 YYYECVICDLGG-NLLCCDSCPRTYHLQCLDPPLKRIPNGKWQCPKCTQKNDQ 125 (1404)
Q Consensus 74 ~~~~C~~C~~~g-~ll~Cd~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~~~~ 125 (1404)
....|.+|...- +-+....|.-.||..|+...+.. ...||.|+..-..
T Consensus 14 ~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~----~~~CP~Cr~~~~~ 62 (72)
T 2djb_A 14 PYILCSICKGYLIDATTITECLHTFCKSCIVRHFYY----SNRCPKCNIVVHQ 62 (72)
T ss_dssp GGGSCTTTSSCCSSCEECSSSCCEECHHHHHHHHHH----CSSCTTTCCCCCS
T ss_pred CCCCCCCCChHHHCcCEECCCCCHHHHHHHHHHHHc----CCcCCCcCcccCc
Confidence 345799998753 34445679999999999765432 3479999876443
No 384
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=23.23 E-value=1e+02 Score=34.54 Aligned_cols=47 Identities=17% Similarity=0.206 Sum_probs=29.9
Q ss_pred HHHhhccCCcEEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEeCCCC
Q 042857 767 LRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLST 816 (1404)
Q Consensus 767 L~~~~~~~~~~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP~Sl 816 (1404)
+........+++|..+.|+|||..+-++..... ...+||+.|-...+
T Consensus 18 ~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~~~---~~~~~~v~v~~~~~ 64 (304)
T 1ojl_A 18 IAMVAPSDATVLIHGDSGTGKELVARALHACSA---RSDRPLVTLNCAAL 64 (304)
T ss_dssp HHHHCSTTSCEEEESCTTSCHHHHHHHHHHHSS---CSSSCCCEEECSSC
T ss_pred HHHHhCCCCcEEEECCCCchHHHHHHHHHHhCc---ccCCCeEEEeCCCC
Confidence 333334567899999999999987766554321 23457766644433
No 385
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=23.15 E-value=86 Score=37.80 Aligned_cols=59 Identities=3% Similarity=-0.123 Sum_probs=41.8
Q ss_pred HHHHHHHhhccCCcEEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEeCCCChHHHHHH
Q 042857 763 ALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLSTMPNWLAE 823 (1404)
Q Consensus 763 gVnwL~~~~~~~~~~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP~Sll~nW~rE 823 (1404)
+++.++.-+..+.-.+|+...|.|||..++.++..+... ...|+|++.-.....+....
T Consensus 231 ~LD~~lgGl~~G~l~li~G~pG~GKT~lal~~a~~~a~~--~g~~vl~~s~E~s~~~l~~r 289 (503)
T 1q57_A 231 GINDKTLGARGGEVIMVTSGSGMVMSTFVRQQALQWGTA--MGKKVGLAMLEESVEETAED 289 (503)
T ss_dssp THHHHHCCCCTTCEEEEEESSCHHHHHHHHHHHHHHTTT--SCCCEEEEESSSCHHHHHHH
T ss_pred hhhHhhcccCCCeEEEEeecCCCCchHHHHHHHHHHHHh--cCCcEEEEeccCCHHHHHHH
Confidence 455555556667778999999999999999888876532 13478888776655555443
No 386
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=22.79 E-value=33 Score=32.83 Aligned_cols=45 Identities=20% Similarity=0.455 Sum_probs=32.1
Q ss_pred cccccccccCCC-c-eEEcCCCCCcccccccCCCCCCCCCCCccCccccccc
Q 042857 74 YYYECVICDLGG-N-LLCCDSCPRTYHLQCLDPPLKRIPNGKWQCPKCTQKN 123 (1404)
Q Consensus 74 ~~~~C~~C~~~g-~-ll~Cd~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~~ 123 (1404)
.+..|.+|...- + ..+ .|.-.|+..|+...+. .+...||.|+..-
T Consensus 14 ~~~~C~iC~~~~~~p~~~--~CgH~fC~~Ci~~~~~---~~~~~CP~Cr~~~ 60 (115)
T 3l11_A 14 SECQCGICMEILVEPVTL--PCNHTLCKPCFQSTVE---KASLCCPFCRRRV 60 (115)
T ss_dssp HHHBCTTTCSBCSSCEEC--TTSCEECHHHHCCCCC---TTTSBCTTTCCBC
T ss_pred CCCCCccCCcccCceeEc--CCCCHHhHHHHHHHHh---HCcCCCCCCCccc
Confidence 345799998642 2 222 6998999999986553 3557899999763
No 387
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=22.72 E-value=14 Score=31.68 Aligned_cols=46 Identities=20% Similarity=0.443 Sum_probs=31.3
Q ss_pred ccccccccCCC-ceEEcCCCCCcccccccCCCCCCCCCCCccCcccccccc
Q 042857 75 YYECVICDLGG-NLLCCDSCPRTYHLQCLDPPLKRIPNGKWQCPKCTQKND 124 (1404)
Q Consensus 75 ~~~C~~C~~~g-~ll~Cd~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~~~ 124 (1404)
...|.+|...- +-...-.|.-.||..|+...+.. ...||.|+..-.
T Consensus 5 ~~~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~~~----~~~CP~Cr~~~~ 51 (68)
T 1chc_A 5 AERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQ----NPTCPLCKVPVE 51 (68)
T ss_dssp CCCCSSCCSCCCSCEEETTTTEEESTTHHHHHHHH----SCSTTTTCCCCC
T ss_pred CCCCeeCCccccCCcEecCCCCeeHHHHHHHHHhC----cCcCcCCChhhH
Confidence 34699998753 32344569988999999765432 247999987643
No 388
>3gx8_A Monothiol glutaredoxin-5, mitochondrial; TRX fold, electron transport, mitochondrion, redox-active center, transit peptide, transport; 1.67A {Saccharomyces cerevisiae}
Probab=22.63 E-value=3.8e+02 Score=25.73 Aligned_cols=71 Identities=6% Similarity=-0.070 Sum_probs=41.2
Q ss_pred HHHHHHHHcCCeEEEEecc------hhHHHHHHHHHhhhcCCce---EEEEeCCCCHHHHHHHHHHHhcCCCceEEEeec
Q 042857 1078 SMLKVLYKEGHRVLIFSQM------TKLLDILEDYLNIEFGPKT---YERVDGSVSVGDRQAAITRFNQDKSRFVFLLST 1148 (1404)
Q Consensus 1078 kLL~kl~~~G~KVLIFSq~------~~~LDiLed~L~~~f~g~~---y~rLdGs~s~~eRq~~Id~Fn~~~s~~VfLLST 1148 (1404)
..+..+.. .++|+||+.. =........+|... ++. |..++=......|+.+........-+.+|+-..
T Consensus 7 ~~v~~~i~-~~~Vvvfsk~t~~~p~Cp~C~~ak~lL~~~--gv~~~~~~~~dv~~~~~~~~~l~~~sg~~tvP~vfI~g~ 83 (121)
T 3gx8_A 7 KAIEDAIE-SAPVVLFMKGTPEFPKCGFSRATIGLLGNQ--GVDPAKFAAYNVLEDPELREGIKEFSEWPTIPQLYVNKE 83 (121)
T ss_dssp HHHHHHHH-SCSEEEEESBCSSSBCTTHHHHHHHHHHHH--TBCGGGEEEEECTTCHHHHHHHHHHHTCCSSCEEEETTE
T ss_pred HHHHHHhc-cCCEEEEEeccCCCCCCccHHHHHHHHHHc--CCCcceEEEEEecCCHHHHHHHHHHhCCCCCCeEEECCE
Confidence 34444444 4689999884 45677777778766 566 777776656555555444433333344554333
Q ss_pred ccc
Q 042857 1149 RSC 1151 (1404)
Q Consensus 1149 rAg 1151 (1404)
-.|
T Consensus 84 ~iG 86 (121)
T 3gx8_A 84 FIG 86 (121)
T ss_dssp EEE
T ss_pred EEe
Confidence 333
No 389
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=22.63 E-value=4.4e+02 Score=28.36 Aligned_cols=131 Identities=17% Similarity=0.212 Sum_probs=71.3
Q ss_pred hhhHHHH-HHHHHHHHHH------cCCeEEEEecchhHHHHHHHHHhhhc--CCceEEEEeCCCCHHHHHHHHHHHhcCC
Q 042857 1069 ASAKLTL-LHSMLKVLYK------EGHRVLIFSQMTKLLDILEDYLNIEF--GPKTYERVDGSVSVGDRQAAITRFNQDK 1139 (1404)
Q Consensus 1069 ~SgKl~~-L~kLL~kl~~------~G~KVLIFSq~~~~LDiLed~L~~~f--~g~~y~rLdGs~s~~eRq~~Id~Fn~~~ 1139 (1404)
.|||-.. +.-++..+.. .|.++||.++....+.-+.+.+...+ .+..+..+.|+.........+. .+
T Consensus 101 GsGKT~~~~l~~l~~l~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~---~~- 176 (262)
T 3ly5_A 101 GSGKTLAFLIPAVELIVKLRFMPRNGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKLG---NG- 176 (262)
T ss_dssp TSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHHHH---HC-
T ss_pred CCCchHHHHHHHHHHHHhccccccCCceEEEEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHHhc---CC-
Confidence 3677643 4455555544 57899999999887766666665432 2567788888887655443332 22
Q ss_pred CceEEEeecc------c-ccccccccCCCEEEEEcC----CCCHhHHHHHHHhhhccCCCCcEEEEEEeeCCCHHHHHHH
Q 042857 1140 SRFVFLLSTR------S-CGLGINLATADTVIIYDS----DFNPHADIQAMNRAHRIGQSKRLLVYRLVVRASVEERILQ 1208 (1404)
Q Consensus 1140 s~~VfLLSTr------A-gG~GINL~~AdtVIi~Ds----dWNP~~d~QAigRahRiGQ~k~V~VYrLvt~~TvEE~Ilq 1208 (1404)
.. ++++|- . .+.++++...+.||+=+. +|.....+.++-+.. . +.+. .+....|+...+.+
T Consensus 177 ~~--Iiv~Tp~~l~~~~~~~~~~~~~~l~~lViDEah~l~~~~~~~~l~~i~~~~--~--~~~q--~l~~SAT~~~~v~~ 248 (262)
T 3ly5_A 177 IN--IIVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLL--P--TRRQ--TMLFSATQTRKVED 248 (262)
T ss_dssp CS--EEEECHHHHHHHHHHCTTCCCTTCCEEEECSHHHHHHTTCHHHHHHHHHHS--C--SSSE--EEEECSSCCHHHHH
T ss_pred CC--EEEEcHHHHHHHHHccCCcccccCCEEEEcChHHHhhhhHHHHHHHHHHhC--C--CCCe--EEEEEecCCHHHHH
Confidence 22 555551 1 123466777777665332 233333333332222 1 1222 24455666666655
Q ss_pred HHH
Q 042857 1209 LAK 1211 (1404)
Q Consensus 1209 ~a~ 1211 (1404)
.++
T Consensus 249 ~~~ 251 (262)
T 3ly5_A 249 LAR 251 (262)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
No 390
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=22.08 E-value=1.3e+02 Score=31.12 Aligned_cols=54 Identities=20% Similarity=0.263 Sum_probs=34.5
Q ss_pred HHHHHHH-hhccCCcEEEEcCCCchHHHHHHHHHHHHHhhccCCCcEEEEeCCCChHH
Q 042857 763 ALNWLRK-CWHKSKNVILADEMGLGKTVSACAFISSLYCEFKAKLPCLVLVPLSTMPN 819 (1404)
Q Consensus 763 gVnwL~~-~~~~~~~~ILADEMGLGKTiqaIa~L~~L~~~~~~~gP~LIVvP~Sll~n 819 (1404)
+++.+.. .+..+.-.+|..+.|.|||..+..++..+... .++++++.......+
T Consensus 11 ~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~---~~~v~~~~~~~~~~~ 65 (235)
T 2w0m_A 11 DFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRD---GDPCIYVTTEESRDS 65 (235)
T ss_dssp HHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHHH---TCCEEEEESSSCHHH
T ss_pred HHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHC---CCeEEEEEcccCHHH
Confidence 4444443 34556778899999999998887777655432 346777665443333
No 391
>2lk0_A RNA-binding protein 5; zinc finger; NMR {Homo sapiens} PDB: 2lk1_A*
Probab=22.06 E-value=22 Score=26.93 Aligned_cols=12 Identities=33% Similarity=0.922 Sum_probs=9.8
Q ss_pred CCCccCcccccc
Q 042857 111 NGKWQCPKCTQK 122 (1404)
Q Consensus 111 ~g~W~C~~C~~~ 122 (1404)
.|+|.|+.|...
T Consensus 3 ~gDW~C~~C~~~ 14 (32)
T 2lk0_A 3 FEDWLCNKCCLN 14 (32)
T ss_dssp CSEEECTTTCCE
T ss_pred CCCCCcCcCcCC
Confidence 499999999754
No 392
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.96 E-value=20 Score=32.34 Aligned_cols=46 Identities=28% Similarity=0.453 Sum_probs=31.2
Q ss_pred ccccccccCCC-c----eEEcCCCCCcccccccCCCCCCCCCCCccCcccccc
Q 042857 75 YYECVICDLGG-N----LLCCDSCPRTYHLQCLDPPLKRIPNGKWQCPKCTQK 122 (1404)
Q Consensus 75 ~~~C~~C~~~g-~----ll~Cd~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~ 122 (1404)
...|.+|...- + .+.. .|.-.||..|+...+..- .+...||.|+..
T Consensus 15 ~~~C~IC~~~~~~~~~~~~~~-~CgH~fC~~Ci~~~~~~~-~~~~~CP~Cr~~ 65 (88)
T 2ct2_A 15 VLECPICMESFTEEQLRPKLL-HCGHTICRQCLEKLLASS-INGVRCPFCSKI 65 (88)
T ss_dssp CCBCTTTCCBCCTTSSCEEEC-SSSCEEEHHHHHHHHHHC-SSCBCCTTTCCC
T ss_pred CCCCccCCccccccCCCeEEC-CCCChhhHHHHHHHHHcC-CCCcCCCCCCCc
Confidence 34699998742 1 2322 699999999998654432 235689999975
No 393
>3ipz_A Monothiol glutaredoxin-S14, chloroplastic; electron transport, PL redox-active center, transit peptide, transport, oxidoreduc; 2.40A {Arabidopsis thaliana} PDB: 2lku_A
Probab=21.89 E-value=2.5e+02 Score=26.35 Aligned_cols=66 Identities=15% Similarity=0.105 Sum_probs=39.3
Q ss_pred HHHHHHHHHcCCeEEEEecc------hhHHHHHHHHHhhhcCCceEEEEeCCCCHHHHHHHHHHHhcCCCceEEE
Q 042857 1077 HSMLKVLYKEGHRVLIFSQM------TKLLDILEDYLNIEFGPKTYERVDGSVSVGDRQAAITRFNQDKSRFVFL 1145 (1404)
Q Consensus 1077 ~kLL~kl~~~G~KVLIFSq~------~~~LDiLed~L~~~f~g~~y~rLdGs~s~~eRq~~Id~Fn~~~s~~VfL 1145 (1404)
...+..+.. .++|+||+.. =........+|... ++.|..++=......++.+........-+.+|+
T Consensus 8 ~~~v~~~i~-~~~Vvvy~k~t~~~p~Cp~C~~ak~~L~~~--gi~~~~~dI~~~~~~~~~l~~~~g~~tvP~ifi 79 (109)
T 3ipz_A 8 KDTLEKLVN-SEKVVLFMKGTRDFPMCGFSNTVVQILKNL--NVPFEDVNILENEMLRQGLKEYSNWPTFPQLYI 79 (109)
T ss_dssp HHHHHHHHT-SSSEEEEESBCSSSBSSHHHHHHHHHHHHT--TCCCEEEEGGGCHHHHHHHHHHHTCSSSCEEEE
T ss_pred HHHHHHHHc-cCCEEEEEecCCCCCCChhHHHHHHHHHHc--CCCcEEEECCCCHHHHHHHHHHHCCCCCCeEEE
Confidence 344444444 5689999984 56778888888876 667777665445555554444333222344443
No 394
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A
Probab=21.41 E-value=44 Score=29.97 Aligned_cols=17 Identities=18% Similarity=0.718 Sum_probs=12.2
Q ss_pred CCCCCCCccCcccccccc
Q 042857 107 KRIPNGKWQCPKCTQKND 124 (1404)
Q Consensus 107 ~~~P~g~W~C~~C~~~~~ 124 (1404)
..+| .+|.||.|.....
T Consensus 35 ~~lP-ddw~CP~Cga~K~ 51 (70)
T 1dx8_A 35 VDLS-DSFMCPACRSPKN 51 (70)
T ss_dssp GGSC-TTCBCTTTCCBGG
T ss_pred hhCC-CCCcCCCCCCCHH
Confidence 4455 5799999987533
No 395
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=21.37 E-value=22 Score=31.62 Aligned_cols=48 Identities=21% Similarity=0.450 Sum_probs=31.6
Q ss_pred ccccccccCCC-ceEEcCCCCCcccccccCCCCCCC--CCCCccCccccccc
Q 042857 75 YYECVICDLGG-NLLCCDSCPRTYHLQCLDPPLKRI--PNGKWQCPKCTQKN 123 (1404)
Q Consensus 75 ~~~C~~C~~~g-~ll~Cd~C~~~~H~~Cl~Ppl~~~--P~g~W~C~~C~~~~ 123 (1404)
...|.+|...- +-+.. .|.-.||..|+...+... ..+...||.|+..-
T Consensus 19 ~~~C~IC~~~~~~p~~~-~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~ 69 (85)
T 2ecw_A 19 EVTCPICLELLKEPVSA-DCNHSFCRACITLNYESNRNTDGKGNCPVCRVPY 69 (85)
T ss_dssp TTSCTTTCSCCSSCEEC-TTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCC
T ss_pred CCCCcCCChhhCcceeC-CCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcC
Confidence 34699998752 22222 588889999987544331 23467899998763
No 396
>1s24_A Rubredoxin 2; electron transport; NMR {Pseudomonas oleovorans} SCOP: g.41.5.1
Probab=21.22 E-value=33 Score=32.06 Aligned_cols=19 Identities=32% Similarity=1.041 Sum_probs=13.2
Q ss_pred CCCCCCCCCccCcccccccc
Q 042857 105 PLKRIPNGKWQCPKCTQKND 124 (1404)
Q Consensus 105 pl~~~P~g~W~C~~C~~~~~ 124 (1404)
+...+| .+|.||.|.....
T Consensus 61 ~fedlP-ddW~CPvCga~K~ 79 (87)
T 1s24_A 61 RFEDIP-DDWCCPDCGATKE 79 (87)
T ss_dssp CGGGCC-TTCCCSSSCCCGG
T ss_pred ChhHCC-CCCCCCCCCCCHH
Confidence 345566 5799999986533
No 397
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=21.10 E-value=70 Score=26.94 Aligned_cols=15 Identities=33% Similarity=1.190 Sum_probs=11.2
Q ss_pred CCCCCCCccCcccccc
Q 042857 107 KRIPNGKWQCPKCTQK 122 (1404)
Q Consensus 107 ~~~P~g~W~C~~C~~~ 122 (1404)
..+| .+|.||.|...
T Consensus 31 ~~lP-~dw~CP~Cg~~ 45 (52)
T 1e8j_A 31 EDLP-DDWACPVCGAS 45 (52)
T ss_dssp TSSC-TTCCCSSSCCC
T ss_pred HHCC-CCCcCCCCCCc
Confidence 4455 57999999865
No 398
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=21.09 E-value=1.2e+02 Score=33.55 Aligned_cols=25 Identities=32% Similarity=0.401 Sum_probs=20.5
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHH
Q 042857 774 SKNVILADEMGLGKTVSACAFISSL 798 (1404)
Q Consensus 774 ~~~~ILADEMGLGKTiqaIa~L~~L 798 (1404)
..+.+|..+.|+|||..+-++...+
T Consensus 38 ~~~vll~G~~GtGKT~la~~i~~~~ 62 (324)
T 1hqc_A 38 LEHLLLFGPPGLGKTTLAHVIAHEL 62 (324)
T ss_dssp CCCCEEECCTTCCCHHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHh
Confidence 4678999999999998887776544
No 399
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=20.86 E-value=1.3e+02 Score=33.65 Aligned_cols=41 Identities=20% Similarity=0.149 Sum_probs=26.6
Q ss_pred CHHHHHHHHHHHHhh----ccCCcEEEEcCCCchHHHHHHHHHHH
Q 042857 757 FPHQLEALNWLRKCW----HKSKNVILADEMGLGKTVSACAFISS 797 (1404)
Q Consensus 757 ~pyQlegVnwL~~~~----~~~~~~ILADEMGLGKTiqaIa~L~~ 797 (1404)
+...+..+..++..+ ....+.+|..+.|+|||..+-++...
T Consensus 34 ~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~ 78 (338)
T 3pfi_A 34 QESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYE 78 (338)
T ss_dssp CHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHH
Confidence 344444454444433 22358999999999999988776443
No 400
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=20.82 E-value=1.2e+02 Score=36.16 Aligned_cols=59 Identities=15% Similarity=0.228 Sum_probs=41.4
Q ss_pred hhhHHHHHHHHHHHHHHcCC-eEEEEecchhHHHHHHHHHhhh--cCCceEEEEeCCCCHHH
Q 042857 1069 ASAKLTLLHSMLKVLYKEGH-RVLIFSQMTKLLDILEDYLNIE--FGPKTYERVDGSVSVGD 1127 (1404)
Q Consensus 1069 ~SgKl~~L~kLL~kl~~~G~-KVLIFSq~~~~LDiLed~L~~~--f~g~~y~rLdGs~s~~e 1127 (1404)
.+||.......+......+. ++||.++.+..+.-..+.|... +++..+..+.|..+..+
T Consensus 138 GsGKT~~~~~~~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~~~~~~~~~~~v~~~~~~~~~~~ 199 (510)
T 2oca_A 138 SAGRSLIQALLARYYLENYEGKILIIVPTTALTTQMADDFVDYRLFSHAMIKKIGGGASKDD 199 (510)
T ss_dssp TTTHHHHHHHHHHHHHHHCSSEEEEEESSHHHHHHHHHHHHHTTSSCGGGEEECGGGCCTTG
T ss_pred CCCHHHHHHHHHHHHHhCCCCeEEEEECcHHHHHHHHHHHHHhhcCCccceEEEecCCcccc
Confidence 47887776666666555555 9999999988877766666543 34457788888776543
No 401
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=20.43 E-value=21 Score=35.59 Aligned_cols=42 Identities=26% Similarity=0.712 Sum_probs=28.9
Q ss_pred cccccccCCC-ceEEcCCCCCcccccccCCCCCCCCCCCccCcccccc
Q 042857 76 YECVICDLGG-NLLCCDSCPRTYHLQCLDPPLKRIPNGKWQCPKCTQK 122 (1404)
Q Consensus 76 ~~C~~C~~~g-~ll~Cd~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~ 122 (1404)
..|.+|...- +.+.. .|+-.||..|+...+.. .-.||.|+..
T Consensus 54 ~~C~iC~~~~~~~~~~-~CgH~fc~~Ci~~~~~~----~~~CP~Cr~~ 96 (138)
T 4ayc_A 54 LQCIICSEYFIEAVTL-NCAHSFCSYCINEWMKR----KIECPICRKD 96 (138)
T ss_dssp SBCTTTCSBCSSEEEE-TTSCEEEHHHHHHHTTT----CSBCTTTCCB
T ss_pred CCCcccCcccCCceEC-CCCCCccHHHHHHHHHc----CCcCCCCCCc
Confidence 4699998753 22222 58888999998765543 2469999865
No 402
>3zyw_A Glutaredoxin-3; metal binding protein; 1.84A {Homo sapiens}
Probab=20.43 E-value=2.8e+02 Score=26.21 Aligned_cols=65 Identities=12% Similarity=0.066 Sum_probs=38.5
Q ss_pred HHHHHHHHcCCeEEEEec------chhHHHHHHHHHhhhcCCceEEEEeCCCCHHHHHHHHHHHhcCCCceEEE
Q 042857 1078 SMLKVLYKEGHRVLIFSQ------MTKLLDILEDYLNIEFGPKTYERVDGSVSVGDRQAAITRFNQDKSRFVFL 1145 (1404)
Q Consensus 1078 kLL~kl~~~G~KVLIFSq------~~~~LDiLed~L~~~f~g~~y~rLdGs~s~~eRq~~Id~Fn~~~s~~VfL 1145 (1404)
..+..+.. .++|+||+. .=........+|... ++.|..+|=......|+.+........-+.+|+
T Consensus 7 ~~v~~~i~-~~~Vvlf~kg~~~~~~Cp~C~~ak~~L~~~--gi~y~~~di~~d~~~~~~l~~~~g~~tvP~ifi 77 (111)
T 3zyw_A 7 LRLKKLTH-AAPCMLFMKGTPQEPRCGFSKQMVEILHKH--NIQFSSFDIFSDEEVRQGLKAYSSWPTYPQLYV 77 (111)
T ss_dssp HHHHHHHT-SSSEEEEESBCSSSBSSHHHHHHHHHHHHT--TCCCEEEEGGGCHHHHHHHHHHHTCCSSCEEEE
T ss_pred HHHHHHHh-cCCEEEEEecCCCCCcchhHHHHHHHHHHc--CCCeEEEECcCCHHHHHHHHHHHCCCCCCEEEE
Confidence 34444443 568999995 345677788888876 677777766555555554443332222344443
No 403
>1u6t_A SH3 domain-binding glutamic acid-rich-like protein; SH3-binding, glutaredoxin, thioredoxin fold, crystallography, protein binding; HET: CIT; 1.90A {Homo sapiens} PDB: 1wry_A
Probab=20.41 E-value=1.4e+02 Score=29.44 Aligned_cols=45 Identities=9% Similarity=0.107 Sum_probs=35.6
Q ss_pred EEEEecchh-------HHHHHHHHHhhhcCCceEEEEeCCCCHHHHHHHHHHHh
Q 042857 1090 VLIFSQMTK-------LLDILEDYLNIEFGPKTYERVDGSVSVGDRQAAITRFN 1136 (1404)
Q Consensus 1090 VLIFSq~~~-------~LDiLed~L~~~f~g~~y~rLdGs~s~~eRq~~Id~Fn 1136 (1404)
|.||+.... -...+..+|... ++.|.-+|=++....|++++++.+
T Consensus 2 V~vYtt~~c~~c~~kk~c~~aK~lL~~k--gV~feEidI~~d~~~r~eM~~~~~ 53 (121)
T 1u6t_A 2 IRVYIASSSGSTAIKKKQQDVLGFLEAN--KIGFEEKDIAANEENRKWMRENVP 53 (121)
T ss_dssp EEEEECTTCSCHHHHHHHHHHHHHHHHT--TCCEEEEECTTCHHHHHHHHHHSC
T ss_pred EEEEecCCCCCccchHHHHHHHHHHHHC--CCceEEEECCCCHHHHHHHHHhcc
Confidence 566665442 236788889876 899999999999999999999984
No 404
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=20.37 E-value=53 Score=28.80 Aligned_cols=48 Identities=25% Similarity=0.406 Sum_probs=31.8
Q ss_pred ccccccccCCC-ceEEcCCCCCcccccccCCCCCCCC---CCCccCccccccc
Q 042857 75 YYECVICDLGG-NLLCCDSCPRTYHLQCLDPPLKRIP---NGKWQCPKCTQKN 123 (1404)
Q Consensus 75 ~~~C~~C~~~g-~ll~Cd~C~~~~H~~Cl~Ppl~~~P---~g~W~C~~C~~~~ 123 (1404)
...|.+|...- +-+.. .|.-.||..|+...+.... .+...||.|+..-
T Consensus 12 ~~~C~IC~~~~~~p~~l-~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~ 63 (79)
T 2egp_A 12 EVTCPICLELLTEPLSL-DCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISY 63 (79)
T ss_dssp CCEETTTTEECSSCCCC-SSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCC
T ss_pred CCCCcCCCcccCCeeEC-CCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcC
Confidence 45699997632 21111 6888999999987655421 2457899998763
No 405
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=20.36 E-value=1.1e+02 Score=35.19 Aligned_cols=25 Identities=32% Similarity=0.468 Sum_probs=20.5
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHH
Q 042857 774 SKNVILADEMGLGKTVSACAFISSL 798 (1404)
Q Consensus 774 ~~~~ILADEMGLGKTiqaIa~L~~L 798 (1404)
..+.+|..++|+|||..+-++...+
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~~l 96 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAKHL 96 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHh
Confidence 4678999999999998887776544
No 406
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=20.00 E-value=3.9e+02 Score=27.96 Aligned_cols=60 Identities=23% Similarity=0.182 Sum_probs=37.0
Q ss_pred hhhHHHH-HHHHHHHHH------HcCCeEEEEecchhHHHHHHHHHhhhcC--CceEEEEeCCCCHHHH
Q 042857 1069 ASAKLTL-LHSMLKVLY------KEGHRVLIFSQMTKLLDILEDYLNIEFG--PKTYERVDGSVSVGDR 1128 (1404)
Q Consensus 1069 ~SgKl~~-L~kLL~kl~------~~G~KVLIFSq~~~~LDiLed~L~~~f~--g~~y~rLdGs~s~~eR 1128 (1404)
.+||-.. +.-++..+. ..+.++||.++......-+.+.+...+. ++.+..+.|+.+....
T Consensus 72 GsGKT~~~~~~~l~~l~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 140 (236)
T 2pl3_A 72 GSGKTLAFLVPVLEALYRLQWTSTDGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHE 140 (236)
T ss_dssp TSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHH
T ss_pred CCcHHHHHHHHHHHHHHhhcccccCCceEEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHH
Confidence 3677654 333344443 3577999999998877776666655322 4677888888765443
Done!