BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>042860
MLPIFLVLFLLSQQAQSATIFVDGISEWKNPSVHVGDTIIFKHKFNNSNLYIFKNKNAFN
LCNFSQATLLTNPNSTSYTWHPSRPGFFYFTFNNGSLQTCNKSSQKLSIKVSAVSSTPSP
TPSTEKPPMMAAPTPAPGGIVSSSPSYPWPFRPHEKAFSPTPAPMIAATSPGTVPDKGSG
IPFINSNPAVPLPTGEVDSATIRPLPTSGHVNQVEVGVLASQLLVLLFSTVFLMM

High Scoring Gene Products

Symbol, full name Information P value
AT1G21090 protein from Arabidopsis thaliana 1.2e-51

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  042860
        (235 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2199617 - symbol:AT1G21090 species:3702 "Arabi...   536  1.2e-51   1


>TAIR|locus:2199617 [details] [associations]
            symbol:AT1G21090 species:3702 "Arabidopsis thaliana"
            [GO:0005886 "plasma membrane" evidence=ISM] [GO:0031225 "anchored
            to membrane" evidence=TAS] EMBL:CP002684 GenomeReviews:CT485782_GR
            GO:GO:0031225 Gene3D:2.60.40.420 InterPro:IPR008972 SUPFAM:SSF49503
            EMBL:BT026415 IPI:IPI00525151 RefSeq:NP_564135.1 UniGene:At.28141
            UniGene:At.75335 ProteinModelPortal:Q0V805 SMR:Q0V805 PaxDb:Q0V805
            PRIDE:Q0V805 EnsemblPlants:AT1G21090.1 GeneID:838705
            KEGG:ath:AT1G21090 TAIR:At1g21090 eggNOG:NOG331788
            HOGENOM:HOG000120100 InParanoid:Q0V805 OMA:TSINPLP PhylomeDB:Q0V805
            ProtClustDB:CLSN2687889 Genevestigator:Q0V805 Uniprot:Q0V805
        Length = 242

 Score = 536 (193.7 bits), Expect = 1.2e-51, P = 1.2e-51
 Identities = 118/236 (50%), Positives = 157/236 (66%)

Query:     5 FLVLFLLSQQAQSATIFVDGISEWKNPSVHVGDTIIFKHKFNNSNLYIFKNKNAFNLCNF 64
             F  L L S+ + SAT  VDG+S WK+P+VH GD++IF+HK+   +LYIF+NK+AFN+CNF
Sbjct:    17 FCFLSLFSRPSLSATFLVDGVSVWKSPTVHTGDSVIFRHKYGY-DLYIFRNKDAFNVCNF 75

Query:    65 SQATLLTNPNSTSYTWHPSRPGFFYFTF-NNGSL-QTCNKSSQKLSIKVSAVXXXXXXXX 122
             +QATLLT PNSTS+TW+PSR G +YF+F NN SL +TC + +QKL+++V           
Sbjct:    76 TQATLLTKPNSTSFTWYPSRTGSYYFSFTNNTSLPKTC-QLNQKLTVQV-----ILAAAS 129

Query:   123 XXEKXXXXXXXXXXXGGIVSSSPSYPWPFRPHE-KAFSPTPAPMIAATSPGTVPDKGSGI 181
                +           GG++SS  SYPWP  P E  AFSP P+P    TS  TVP K  G+
Sbjct:   130 PPSQPPATAPVPVSEGGVISSPSSYPWPLGPREGSAFSPGPSPS-EITSV-TVPGK-DGV 186

Query:   182 PFINSNPAVPLPTGEVDSATIRPLPTSGH-VNQVEVGVLASQL-LVLLFSTVFLMM 235
             PFINSNPAVPLPTG+VDS +I PLPTS +  +QV +  L  +L L  +   +FL++
Sbjct:   187 PFINSNPAVPLPTGDVDSTSINPLPTSTNSAHQVMMMTLTVKLGLCCVAMFLFLVL 242


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.318   0.133   0.405    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      235       214   0.00085  112 3  11 22  0.38    33
                                                     31  0.49    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  602 (64 KB)
  Total size of DFA:  171 KB (2099 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  20.00u 0.09s 20.09t   Elapsed:  00:00:01
  Total cpu time:  20.00u 0.09s 20.09t   Elapsed:  00:00:01
  Start:  Sat May 11 05:21:54 2013   End:  Sat May 11 05:21:55 2013

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