BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042860
(235 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SK27|ENL1_ARATH Early nodulin-like protein 1 OS=Arabidopsis thaliana GN=At2g25060
PE=1 SV=2
Length = 182
Score = 41.6 bits (96), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 65/158 (41%), Gaps = 27/158 (17%)
Query: 2 LPIFLVLFLLSQQAQSATIFVDGISEWKNP--------------SVHVGDTIIFKHKFNN 47
+ IF ++FL S A + +WK P VGD I+F+++
Sbjct: 14 VAIFSLIFLFSLAAANEVTVGGKSGDWKIPPSSSYSFTEWAQKARFKVGDFIVFRYESGK 73
Query: 48 SNLYIFKNKNAFNLCNFSQATLLTNPNSTSYTWHPSRPGFFYFTFNNGSLQTCNKSSQKL 107
++ + K A+N CN + L N R G FYF +G+ C K QKL
Sbjct: 74 DSV-LEVTKEAYNSCNTTNP--LANYTDGETKVKLDRSGPFYFI--SGANGHCEK-GQKL 127
Query: 108 SIKV-----SAVSSTPSPTPSTEKPPMMAAPTPAPGGI 140
S+ V S +S PSP + P + AP P G +
Sbjct: 128 SLVVISPRHSVISPAPSPVEFEDGPAL--APAPISGSV 163
>sp|P41246|MMP9_RABIT Matrix metalloproteinase-9 OS=Oryctolagus cuniculus GN=MMP9 PE=2
SV=1
Length = 707
Score = 39.7 bits (91), Expect = 0.020, Method: Composition-based stats.
Identities = 25/73 (34%), Positives = 33/73 (45%), Gaps = 6/73 (8%)
Query: 118 PSPTPSTEKPPMMAAPTPAPGGIVSSSPSYPWPFRPHEK-AFSPTPAPMIAATSPGTVPD 176
P+P P +PP P P P ++ P++P RP E SPT AP T P T
Sbjct: 445 PNPNP---QPPATTTPEPQPTAPPTACPTWPATVRPSEHPTTSPTGAPSAGPTGPPTASP 501
Query: 177 KGSGIPFINSNPA 189
S P + +PA
Sbjct: 502 --SAAPTASLDPA 512
>sp|Q9UQ16|DYN3_HUMAN Dynamin-3 OS=Homo sapiens GN=DNM3 PE=1 SV=4
Length = 869
Score = 38.5 bits (88), Expect = 0.041, Method: Composition-based stats.
Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 10/70 (14%)
Query: 117 TPSPTPSTEKPPMMAAPTPAPGGIVSSSPSYPWPFRPHEKA----FSPTPAPMIAATS-- 170
+P P+P+T++ P ++AP P +P+ P P PH A F P P P ++S
Sbjct: 769 SPPPSPTTQRRPTLSAPLARPTSGRGPAPAIPSP-GPHSGAPPVPFRPGPLPPFPSSSDS 827
Query: 171 ---PGTVPDK 177
P VP +
Sbjct: 828 FGAPPQVPSR 837
>sp|Q08877|DYN3_RAT Dynamin-3 OS=Rattus norvegicus GN=Dnm3 PE=1 SV=2
Length = 869
Score = 37.7 bits (86), Expect = 0.063, Method: Composition-based stats.
Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 10/70 (14%)
Query: 117 TPSPTPSTEKPPMMAAPTPAPGGIVSSSPSYPWPFRPHEKA----FSPTPAPMIAATS-- 170
+P P+P+T++ ++AP P P +P+ P P PH A F P P P +S
Sbjct: 769 SPPPSPTTQRRLTLSAPLPRPASSRGPAPAIPSP-GPHSGAPPVPFRPGPLPPFPNSSDS 827
Query: 171 ---PGTVPDK 177
P VP +
Sbjct: 828 YGAPPQVPSR 837
>sp|G3MWR8|MICA3_BOVIN Protein-methionine sulfoxide oxidase MICAL3 OS=Bos taurus GN=MICAL3
PE=3 SV=1
Length = 1960
Score = 37.4 bits (85), Expect = 0.081, Method: Composition-based stats.
Identities = 31/130 (23%), Positives = 45/130 (34%), Gaps = 19/130 (14%)
Query: 76 TSYTWHPSRPGFFYFTFNNGSLQTCNKSSQKLSIKVSAVSSTPSPTPST----------- 124
+S T P P + Q+ + ++ V + + +P P PST
Sbjct: 1151 SSPTRSPEEPTGLSSPARSPGAQSAHPPLAAVATGVRSPAESPLPEPSTPPAEPEAHPPI 1210
Query: 125 -EKPPMMAAPTPAPGGIVSSSPSYPWPFRPHEKAFSPTPAPMIAATSPGTVPDKGSGIPF 183
+P P+PA SP P P P P+P SP P + +P
Sbjct: 1211 RSQPEARTPPSPA-------SPQRPSPPTQLPICSQPQPSPEATVPSPTLSPIRSQPVPA 1263
Query: 184 INSNPAVPLP 193
S P PLP
Sbjct: 1264 RTSTPLAPLP 1273
>sp|Q8BZ98|DYN3_MOUSE Dynamin-3 OS=Mus musculus GN=Dnm3 PE=1 SV=1
Length = 863
Score = 36.6 bits (83), Expect = 0.16, Method: Composition-based stats.
Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 10/70 (14%)
Query: 117 TPSPTPSTEKPPMMAAPTPAPGGIVSSSPSYPWPFRPHEKA----FSPTPAPMIAATS-- 170
+P P+P+T++ ++AP P P +P+ P P PH A F P P P +S
Sbjct: 763 SPPPSPTTQRRLTISAPLPRPTSGRGPAPAIPSP-GPHSGAPPVPFRPGPLPPFPNSSDS 821
Query: 171 ---PGTVPDK 177
P VP +
Sbjct: 822 FGAPPQVPSR 831
>sp|Q5JNJ5|ENL1_ORYSJ Early nodulin-like protein 1 OS=Oryza sativa subsp. japonica
GN=ENODL1 PE=1 SV=1
Length = 237
Score = 32.3 bits (72), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 46/117 (39%), Gaps = 14/117 (11%)
Query: 34 HVGDTIIFKHKFNNSNLYIFKNKNAFNLCNFSQ-ATLLTNPNSTSYTWHPSRPGFFYFTF 92
V DTI+F H + + F+ C+ L + + + R G F+F
Sbjct: 57 QVNDTIVFLHDDEVGGSVLQVTEGDFDTCSTGNPVQRLEDVAAGRSVFRFDRSGPFFFI- 115
Query: 93 NNGSLQTCNKSSQKLSIKVSAVSSTPSPTPSTEKPPMMAAPTPAPGGIVSSSPSYPW 149
+G C K QKL I V AV PT +E AP PA SS S+ W
Sbjct: 116 -SGDEDRCQKG-QKLYIIVMAVR----PTKPSE------APEPAGAAGPVSSKSWSW 160
>sp|B4JHI7|LST2_DROGR Lateral signaling target protein 2 homolog OS=Drosophila grimshawi
GN=GH18624 PE=3 SV=1
Length = 1115
Score = 31.2 bits (69), Expect = 7.0, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 103 SSQKLSIKVSAVSSTPSPTPSTEKPPMMAAPTPAPGGIVSSSPSYPWP 150
S Q S V+A ++TP+ + T PP + +P+ S +PS P P
Sbjct: 379 SQQTSSCSVNAAATTPATSSRTRTPPSILSPSAGSTPTASPAPS-PTP 425
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.131 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 92,027,610
Number of Sequences: 539616
Number of extensions: 4355386
Number of successful extensions: 28590
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 885
Number of HSP's that attempted gapping in prelim test: 23016
Number of HSP's gapped (non-prelim): 4430
length of query: 235
length of database: 191,569,459
effective HSP length: 114
effective length of query: 121
effective length of database: 130,053,235
effective search space: 15736441435
effective search space used: 15736441435
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.3 bits)