Query 042860
Match_columns 235
No_of_seqs 188 out of 853
Neff 5.1
Searched_HMMs 46136
Date Fri Mar 29 10:19:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042860.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042860hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03148 Blue copper-like prot 100.0 6.3E-33 1.4E-37 235.0 13.6 96 10-113 13-119 (167)
2 PF02298 Cu_bind_like: Plastoc 99.9 7E-23 1.5E-27 155.9 3.7 71 28-105 13-85 (85)
3 TIGR02656 cyanin_plasto plasto 98.3 4.8E-06 1E-10 64.4 9.5 85 19-112 2-99 (99)
4 PRK02710 plastocyanin; Provisi 98.3 4.8E-06 1E-10 66.6 9.7 82 19-112 32-119 (119)
5 TIGR03102 halo_cynanin halocya 98.3 3.5E-06 7.7E-11 67.8 8.8 85 16-112 22-115 (115)
6 PF00127 Copper-bind: Copper b 98.3 4.2E-06 9.2E-11 64.5 8.7 74 32-112 20-99 (99)
7 COG3794 PetE Plastocyanin [Ene 98.2 5.1E-06 1.1E-10 68.2 8.2 69 32-112 57-127 (128)
8 TIGR02375 pseudoazurin pseudoa 98.1 1.6E-05 3.5E-10 64.1 8.2 71 32-113 18-88 (116)
9 TIGR02657 amicyanin amicyanin. 97.4 0.001 2.2E-08 49.7 7.9 69 32-112 14-83 (83)
10 TIGR03095 rusti_cyanin rusticy 97.4 0.0012 2.6E-08 55.2 9.0 76 32-112 55-148 (148)
11 PF00812 Ephrin: Ephrin; Inte 97.0 0.00093 2E-08 56.0 4.5 80 32-112 25-144 (145)
12 KOG3858 Ephrin, ligand for Eph 96.7 0.0092 2E-07 53.7 8.3 78 33-114 47-162 (233)
13 PF06525 SoxE: Sulfocyanin (So 95.9 0.046 1E-06 48.0 8.4 80 33-115 90-189 (196)
14 TIGR03096 nitroso_cyanin nitro 95.8 0.035 7.6E-07 46.1 6.9 56 32-100 64-122 (135)
15 PF13473 Cupredoxin_1: Cupredo 94.4 0.044 9.5E-07 42.2 3.4 64 32-111 38-104 (104)
16 TIGR02695 azurin azurin. Azuri 93.5 0.27 5.8E-06 40.5 6.5 37 70-110 85-124 (125)
17 TIGR03094 sulfo_cyanin sulfocy 93.5 0.42 9.1E-06 41.9 8.0 78 34-114 90-187 (195)
18 COG4454 Uncharacterized copper 92.6 0.24 5.3E-06 42.2 5.1 76 32-112 66-157 (158)
19 TIGR02376 Cu_nitrite_red nitri 91.8 0.75 1.6E-05 42.6 7.8 77 32-114 62-147 (311)
20 PRK02888 nitrous-oxide reducta 90.7 1.2 2.6E-05 45.5 8.6 68 32-113 558-634 (635)
21 PF00116 COX2: Cytochrome C ox 89.0 1.5 3.3E-05 35.2 6.4 66 32-111 49-119 (120)
22 PLN02604 oxidoreductase 85.0 12 0.00025 37.6 11.5 78 32-114 58-145 (566)
23 TIGR02866 CoxB cytochrome c ox 84.7 3.5 7.5E-05 35.7 6.7 33 76-113 157-192 (201)
24 COG1622 CyoA Heme/copper-type 84.3 3 6.5E-05 37.8 6.3 33 77-114 178-213 (247)
25 PF07732 Cu-oxidase_3: Multico 82.5 5.5 0.00012 31.6 6.5 77 32-113 29-115 (117)
26 MTH00047 COX2 cytochrome c oxi 78.8 3.6 7.7E-05 36.0 4.7 34 76-114 156-192 (194)
27 TIGR03388 ascorbase L-ascorbat 71.3 17 0.00037 36.1 7.8 78 32-114 35-122 (541)
28 KOG1924 RhoA GTPase effector D 61.0 71 0.0015 34.2 10.0 12 193-204 600-611 (1102)
29 MTH00140 COX2 cytochrome c oxi 60.6 13 0.00028 33.0 4.2 33 76-113 180-215 (228)
30 TIGR01480 copper_res_A copper- 60.1 24 0.00051 35.9 6.4 75 32-111 502-586 (587)
31 TIGR03511 GldH_lipo gliding mo 54.8 33 0.00072 29.0 5.5 56 4-64 10-74 (156)
32 cd06555 ASCH_PF0470_like ASC-1 54.2 11 0.00024 30.2 2.4 31 31-61 30-61 (109)
33 MTH00154 COX2 cytochrome c oxi 53.5 21 0.00045 31.8 4.3 32 77-113 181-215 (227)
34 PF02362 B3: B3 DNA binding do 52.7 9.4 0.0002 28.3 1.7 16 31-46 72-87 (100)
35 PTZ00047 cytochrome c oxidase 52.6 22 0.00047 30.6 4.1 31 78-113 115-148 (162)
36 PLN02191 L-ascorbate oxidase 52.2 52 0.0011 33.2 7.3 72 32-113 57-143 (574)
37 MTH00168 COX2 cytochrome c oxi 50.2 24 0.00051 31.3 4.1 32 77-113 181-215 (225)
38 TIGR01480 copper_res_A copper- 50.1 1.1E+02 0.0024 31.1 9.3 75 32-113 79-162 (587)
39 MTH00129 COX2 cytochrome c oxi 49.6 23 0.00049 31.6 3.9 32 77-113 181-215 (230)
40 PLN02168 copper ion binding / 49.4 99 0.0021 31.1 8.8 73 32-114 60-146 (545)
41 TIGR01433 CyoA cytochrome o ub 49.2 26 0.00056 31.2 4.2 33 76-113 179-214 (226)
42 MTH00098 COX2 cytochrome c oxi 48.9 25 0.00055 31.3 4.1 32 77-113 181-215 (227)
43 MTH00139 COX2 cytochrome c oxi 48.2 25 0.00055 31.1 4.0 32 77-113 181-215 (226)
44 PRK10378 inactive ferrous ion 47.1 78 0.0017 30.6 7.4 36 70-113 82-117 (375)
45 MTH00117 COX2 cytochrome c oxi 46.7 28 0.00062 30.9 4.1 32 77-113 181-215 (227)
46 TIGR01432 QOXA cytochrome aa3 46.7 31 0.00068 30.2 4.3 33 76-113 170-205 (217)
47 MTH00038 COX2 cytochrome c oxi 46.3 33 0.00071 30.6 4.4 32 77-113 181-215 (229)
48 PLN00044 multi-copper oxidase- 44.8 63 0.0014 33.0 6.6 73 32-114 63-149 (596)
49 MTH00023 COX2 cytochrome c oxi 43.2 37 0.00081 30.4 4.3 31 78-113 193-226 (240)
50 TIGR03389 laccase laccase, pla 41.5 99 0.0022 30.8 7.4 72 32-114 37-123 (539)
51 PLN02354 copper ion binding / 40.2 1.1E+02 0.0024 30.8 7.5 73 32-114 61-147 (552)
52 MTH00008 COX2 cytochrome c oxi 39.7 41 0.00089 30.0 4.0 32 77-113 181-215 (228)
53 MTH00051 COX2 cytochrome c oxi 38.7 40 0.00087 30.1 3.8 31 78-113 186-219 (234)
54 MTH00076 COX2 cytochrome c oxi 38.4 43 0.00094 29.8 3.9 32 77-113 181-215 (228)
55 PLN02835 oxidoreductase 36.2 1.6E+02 0.0034 29.6 7.9 72 32-113 63-148 (539)
56 MTH00027 COX2 cytochrome c oxi 35.5 58 0.0013 29.8 4.3 32 77-113 215-249 (262)
57 PTZ00414 10 kDa heat shock pro 35.3 71 0.0015 25.3 4.3 44 17-63 47-90 (100)
58 PLN02991 oxidoreductase 34.2 2E+02 0.0044 29.0 8.3 73 32-114 62-148 (543)
59 PRK09723 putative fimbrial-lik 33.8 3E+02 0.0064 27.2 9.0 36 16-52 26-69 (421)
60 PF07731 Cu-oxidase_2: Multico 33.1 35 0.00075 26.7 2.2 40 71-113 97-136 (138)
61 PLN02792 oxidoreductase 33.0 1.5E+02 0.0032 29.8 7.1 80 32-120 50-142 (536)
62 MTH00185 COX2 cytochrome c oxi 32.9 63 0.0014 28.8 4.1 32 77-113 181-215 (230)
63 PRK14533 groES co-chaperonin G 32.4 55 0.0012 25.3 3.2 46 16-64 37-82 (91)
64 PRK10525 cytochrome o ubiquino 31.2 62 0.0013 30.5 3.9 32 76-112 191-225 (315)
65 KOG1546 Metacaspase involved i 30.1 24 0.00052 33.7 1.0 15 31-45 133-147 (362)
66 MTH00080 COX2 cytochrome c oxi 29.5 88 0.0019 28.0 4.4 32 77-113 184-218 (231)
67 PF11766 Candida_ALS_N: Cell-w 28.8 24 0.00051 32.2 0.7 41 27-67 1-49 (249)
68 KOG1263 Multicopper oxidases [ 28.7 3.7E+02 0.008 27.4 9.1 105 1-120 10-154 (563)
69 PF10670 DUF4198: Domain of un 28.1 2.4E+02 0.0052 23.4 6.7 17 76-92 193-209 (215)
70 PF12961 DUF3850: Domain of Un 28.1 36 0.00078 25.5 1.4 12 31-42 27-38 (72)
71 PF04092 SAG: SRS domain; Int 27.7 1.2E+02 0.0025 23.6 4.4 24 83-111 94-124 (124)
72 PF00394 Cu-oxidase: Multicopp 26.7 1.2E+02 0.0026 24.7 4.5 43 70-113 112-157 (159)
73 PF10377 ATG11: Autophagy-rela 26.7 49 0.0011 27.0 2.1 19 31-49 41-59 (129)
74 PF05382 Amidase_5: Bacterioph 26.0 1.3E+02 0.0028 25.3 4.5 36 32-68 75-115 (145)
75 PF04151 PPC: Bacterial pre-pe 23.1 2.1E+02 0.0045 19.9 4.6 16 76-91 52-67 (70)
76 COG4446 Uncharacterized protei 21.8 70 0.0015 26.7 2.1 24 32-56 91-114 (141)
77 PF14326 DUF4384: Domain of un 20.5 83 0.0018 23.1 2.1 15 32-46 2-16 (83)
78 PF15436 PGBA_N: Plasminogen-b 20.1 62 0.0013 29.1 1.6 31 32-63 79-109 (218)
No 1
>PLN03148 Blue copper-like protein; Provisional
Probab=100.00 E-value=6.3e-33 Score=234.95 Aligned_cols=96 Identities=20% Similarity=0.350 Sum_probs=86.2
Q ss_pred HhhhcccceEEEecCCCCCCC----------CceeeCCEEEEEecCCCCceEEecCcccccccCCCCcc-cccCCCCcce
Q 042860 10 LLSQQAQSATIFVDGISEWKN----------PSVHVGDTIIFKHKFNNSNLYIFKNKNAFNLCNFSQAT-LLTNPNSTSY 78 (235)
Q Consensus 10 ll~~~a~A~~~~VGg~~GW~~----------ptF~VGDtLvF~y~~~~HsVv~V~~~~~Y~~Cn~s~p~-~~s~g~st~~ 78 (235)
++...+.+++|+|||+.||+. ++|+|||+|+|+|+++.|||+|| +|++|++|+.++++ .+++|++
T Consensus 13 ~~~~~~~a~~~~VGd~~GW~~~~~Y~~WA~~k~F~VGD~LvF~Y~~~~hnV~~V-~~~~Y~~C~~~~pi~~~tsG~d--- 88 (167)
T PLN03148 13 FSASATTATDHIVGANKGWNPGINYTLWANNQTFYVGDLISFRYQKTQYNVFEV-NQTGYDNCTTEGAAGNWTSGKD--- 88 (167)
T ss_pred HhhhhccceEEEeCCCCCcCCCCChhHhhcCCCCccCCEEEEEecCCCceEEEE-ChHHcCcccCCCCcceecCCCc---
Confidence 445577899999999999963 59999999999999999999998 99999999999988 4888876
Q ss_pred EEEcCCceeEEEEEcCCCCCccccCCceeEEEEec
Q 042860 79 TWHPSRPGFFYFTFNNGSLQTCNKSSQKLSIKVSA 113 (235)
Q Consensus 79 ~v~L~~~G~~YFiCssg~~~HC~~~GqKl~I~V~~ 113 (235)
.|+|+++|+||||| | .+|| ++||||.|+|.+
T Consensus 89 ~v~L~~~G~~YFIc--g-~ghC-~~GmKl~I~V~~ 119 (167)
T PLN03148 89 FIPLNKAKRYYFIC--G-NGQC-FNGMKVTILVHP 119 (167)
T ss_pred EEEecCCccEEEEc--C-CCcc-ccCCEEEEEEcC
Confidence 68999999999999 4 4899 999999999964
No 2
>PF02298 Cu_bind_like: Plastocyanin-like domain; InterPro: IPR003245 Blue (type 1) copper proteins are small proteins which bind a single copper atom and which are characterised by an intense electronic absorption band near 600 nm [, ]. The most well known members of this class of proteins are the plant chloroplastic plastocyanins, which exchange electrons with cytochrome c6, and the distantly related bacterial azurins, which exchange electrons with cytochrome c551. This family of proteins also includes amicyanin from bacteria such as Methylobacterium extorquens or Paracoccus versutus (Thiobacillus versutus) that can grow on methylamine; auracyanins A and B from Chloroflexus aurantiacus []; blue copper protein from Alcaligenes faecalis; cupredoxin (CPC) from Cucumis sativus (Cucumber) peelings []; cusacyanin (basic blue protein; plantacyanin, CBP) from cucumber; halocyanin from Natronomonas pharaonis (Natronobacterium pharaonis) [], a membrane associated copper-binding protein; pseudoazurin from Pseudomonas; rusticyanin from Thiobacillus ferrooxidans []; stellacyanin from Rhus vernicifera (Japanese lacquer tree); umecyanin from the roots of Armoracia rusticana (Horseradish); and allergen Ra3 from ragweed. Although there is an appreciable amount of divergence in the sequences of all these proteins, the copper ligand sites are conserved. This domain is found in a variety of plant cyanins and pollern allergen. Some of the proteins in this family are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Amb a 3.; GO: 0005507 copper ion binding, 0009055 electron carrier activity; PDB: 1JER_A 1WS7_A 1WS8_D 1F56_B 1X9R_B 1X9U_A 2CBP_A.
Probab=99.87 E-value=7e-23 Score=155.90 Aligned_cols=71 Identities=27% Similarity=0.528 Sum_probs=53.8
Q ss_pred CCC-CceeeCCEEEEEecCCCCceEEecCcccccccCCCCccc-ccCCCCcceEEEcCCceeEEEEEcCCCCCccccCCc
Q 042860 28 WKN-PSVHVGDTIIFKHKFNNSNLYIFKNKNAFNLCNFSQATL-LTNPNSTSYTWHPSRPGFFYFTFNNGSLQTCNKSSQ 105 (235)
Q Consensus 28 W~~-ptF~VGDtLvF~y~~~~HsVv~V~~~~~Y~~Cn~s~p~~-~s~g~st~~~v~L~~~G~~YFiCssg~~~HC~~~Gq 105 (235)
|.. ++|+|||+|+|+|+.+.|||+|| +|++|++|+.++++. +++|++ +|+|+++|.+|||| ++++|| ++||
T Consensus 13 Wa~~~~F~vGD~LvF~y~~~~h~V~~V-~~~~y~~C~~~~~~~~~~~G~~---~v~L~~~G~~YFic--~~~~HC-~~Gq 85 (85)
T PF02298_consen 13 WASGKTFRVGDTLVFNYDSGQHSVVEV-SKADYDSCNSSNPISTYSTGND---TVTLTKPGPHYFIC--GVPGHC-QKGQ 85 (85)
T ss_dssp HHCTS-BETTEEEEEE--TTTB-EEEE-SHHHHHHT--STTSEEE-SSEE---EEEE-SSEEEEEE----STTTT-TTT-
T ss_pred hhcCCcEeCCCEEEEEecCCCCeEEec-ChhhCccCCCCCceecccCCCE---EEEeCCCcCeEEEe--CCCCcc-cccC
Confidence 543 68999999999999999999999 799999999999885 666654 79999999999999 599999 9998
No 3
>TIGR02656 cyanin_plasto plastocyanin. Members of this family are plastocyanin, a blue copper protein related to pseudoazurin, halocyanin, amicyanin, etc. This protein, located in the thylakoid luman, performs electron transport to photosystem I in Cyanobacteria and chloroplasts.
Probab=98.33 E-value=4.8e-06 Score=64.37 Aligned_cols=85 Identities=21% Similarity=0.185 Sum_probs=56.4
Q ss_pred EEEecCCCC-CCC-C---ceeeCCEEEEEecC-CCCceEEecCccccc------ccCCCC-cccccCCCCcceEEEcCCc
Q 042860 19 TIFVDGISE-WKN-P---SVHVGDTIIFKHKF-NNSNLYIFKNKNAFN------LCNFSQ-ATLLTNPNSTSYTWHPSRP 85 (235)
Q Consensus 19 ~~~VGg~~G-W~~-p---tF~VGDtLvF~y~~-~~HsVv~V~~~~~Y~------~Cn~s~-p~~~s~g~st~~~v~L~~~ 85 (235)
++.||.+.| -.+ | ++++||+|.|+.+. ..||++.. +. ... .....+ ...+..|. +++++++.+
T Consensus 2 ~v~~g~~~g~~~F~P~~i~v~~G~~V~~~N~~~~~H~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~pG~--t~~~tF~~~ 77 (99)
T TIGR02656 2 TVKMGADKGALVFEPAKISIAAGDTVEWVNNKGGPHNVVFD-ED-AVPAGVKELAKSLSHKDLLNSPGE--SYEVTFSTP 77 (99)
T ss_pred EEEEecCCCceeEeCCEEEECCCCEEEEEECCCCCceEEEC-CC-CCccchhhhcccccccccccCCCC--EEEEEeCCC
Confidence 567775443 443 2 79999999999753 56999973 22 111 111111 11233343 368888899
Q ss_pred eeEEEEEcCCCCCccccCCceeEEEEe
Q 042860 86 GFFYFTFNNGSLQTCNKSSQKLSIKVS 112 (235)
Q Consensus 86 G~~YFiCssg~~~HC~~~GqKl~I~V~ 112 (235)
|.|.|+| ..|+ ++|||..|.|.
T Consensus 78 G~y~y~C----~~H~-~aGM~G~I~V~ 99 (99)
T TIGR02656 78 GTYTFYC----EPHR-GAGMVGKITVE 99 (99)
T ss_pred EEEEEEc----CCcc-ccCCEEEEEEC
Confidence 9999999 2899 99999999984
No 4
>PRK02710 plastocyanin; Provisional
Probab=98.33 E-value=4.8e-06 Score=66.61 Aligned_cols=82 Identities=12% Similarity=0.127 Sum_probs=54.7
Q ss_pred EEEecCCCCCC-C-C---ceeeCCEEEEEec-CCCCceEEecCcccccccCCCCcccccCCCCcceEEEcCCceeEEEEE
Q 042860 19 TIFVDGISEWK-N-P---SVHVGDTIIFKHK-FNNSNLYIFKNKNAFNLCNFSQATLLTNPNSTSYTWHPSRPGFFYFTF 92 (235)
Q Consensus 19 ~~~VGg~~GW~-~-p---tF~VGDtLvF~y~-~~~HsVv~V~~~~~Y~~Cn~s~p~~~s~g~st~~~v~L~~~G~~YFiC 92 (235)
++.+|.+.|+- + | ++++||+|.|... ...||++. +.. +... ........|. +++++++.+|.|.|+|
T Consensus 32 ~V~~~~~~~~~~F~P~~i~v~~Gd~V~~~N~~~~~H~v~~--~~~--~~~~-~~~~~~~pg~--t~~~tF~~~G~y~y~C 104 (119)
T PRK02710 32 EVKMGSDAGMLAFEPSTLTIKAGDTVKWVNNKLAPHNAVF--DGA--KELS-HKDLAFAPGE--SWEETFSEAGTYTYYC 104 (119)
T ss_pred EEEEccCCCeeEEeCCEEEEcCCCEEEEEECCCCCceEEe--cCC--cccc-ccccccCCCC--EEEEEecCCEEEEEEc
Confidence 44566655552 2 2 7999999999874 35699985 221 1111 1112233333 3678888999999999
Q ss_pred cCCCCCccccCCceeEEEEe
Q 042860 93 NNGSLQTCNKSSQKLSIKVS 112 (235)
Q Consensus 93 ssg~~~HC~~~GqKl~I~V~ 112 (235)
..|= ++|||..|+|.
T Consensus 105 ----~~H~-~~gM~G~I~V~ 119 (119)
T PRK02710 105 ----EPHR-GAGMVGKITVE 119 (119)
T ss_pred ----CCCc-cCCcEEEEEEC
Confidence 2788 89999999984
No 5
>TIGR03102 halo_cynanin halocyanin domain. Halocyanins are blue (type I) copper redox proteins found in halophilic archaea such as Natronobacterium pharaonis. This model represents a domain duplicated in some halocyanins, while appearing once in others. This domain includes the characteristic copper ligand residues. This family does not include plastocyanins, and does not include certain divergent paralogs of halocyanin.
Probab=98.32 E-value=3.5e-06 Score=67.80 Aligned_cols=85 Identities=14% Similarity=0.225 Sum_probs=58.8
Q ss_pred cceEEEec--CCCC-CCC-C---ceeeCCEEEEEecC--CCCceEEecCcccccccCCCCcccccCCCCcceEEEcCCce
Q 042860 16 QSATIFVD--GISE-WKN-P---SVHVGDTIIFKHKF--NNSNLYIFKNKNAFNLCNFSQATLLTNPNSTSYTWHPSRPG 86 (235)
Q Consensus 16 ~A~~~~VG--g~~G-W~~-p---tF~VGDtLvF~y~~--~~HsVv~V~~~~~Y~~Cn~s~p~~~s~g~st~~~v~L~~~G 86 (235)
...++.|| ++.| ..+ | ++++||+|.|+++. ..|||.-. +...|+. .......|. +|+++|+++|
T Consensus 22 ~~~~v~~G~~~~~g~~~F~P~~ltV~~GdTVtw~~~~d~~~HnV~s~-~~~~f~s----~~~~~~~G~--t~s~Tf~~~G 94 (115)
T TIGR03102 22 DEVTVDVGAEANGGGFAFDPPAIRVDPGTTVVWEWTGEGGGHNVVSD-GDGDLDE----SERVSEEGT--TYEHTFEEPG 94 (115)
T ss_pred ceEEEEecccCCCCceeEeCCEEEECCCCEEEEEECCCCCCEEEEEC-CCCCccc----cccccCCCC--EEEEEecCCc
Confidence 45678888 3322 332 2 89999999999864 56999852 3333441 111223333 4889999999
Q ss_pred eEEEEEcCCCCCccccCCceeEEEEe
Q 042860 87 FFYFTFNNGSLQTCNKSSQKLSIKVS 112 (235)
Q Consensus 87 ~~YFiCssg~~~HC~~~GqKl~I~V~ 112 (235)
.|.|+| .-|= ..|||-.|.|.
T Consensus 95 ~Y~Y~C----~pH~-~~gM~G~I~V~ 115 (115)
T TIGR03102 95 IYLYVC----VPHE-ALGMKGAVVVE 115 (115)
T ss_pred EEEEEc----cCCC-CCCCEEEEEEC
Confidence 999999 4787 78999999983
No 6
>PF00127 Copper-bind: Copper binding proteins, plastocyanin/azurin family; InterPro: IPR000923 Blue (type 1) copper proteins are small proteins which bind a single copper atom and which are characterised by an intense electronic absorption band near 600 nm [, ]. The most well known members of this class of proteins are the plant chloroplastic plastocyanins, which exchange electrons with cytochrome c6, and the distantly related bacterial azurins, which exchange electrons with cytochrome c551. This family of proteins also includes amicyanin from bacteria such as Methylobacterium extorquens or Paracoccus versutus (Thiobacillus versutus) that can grow on methylamine; auracyanins A and B from Chloroflexus aurantiacus []; blue copper protein from Alcaligenes faecalis; cupredoxin (CPC) from Cucumis sativus (Cucumber) peelings []; cusacyanin (basic blue protein; plantacyanin, CBP) from cucumber; halocyanin from Natronomonas pharaonis (Natronobacterium pharaonis) [], a membrane associated copper-binding protein; pseudoazurin from Pseudomonas; rusticyanin from Thiobacillus ferrooxidans []; stellacyanin from Rhus vernicifera (Japanese lacquer tree); umecyanin from the roots of Armoracia rusticana (Horseradish); and allergen Ra3 from ragweed. This pollen protein is evolutionary related to the above proteins, but seems to have lost the ability to bind copper. Although there is an appreciable amount of divergence in the sequences of all these proteins, the copper ligand sites are conserved.; GO: 0005507 copper ion binding, 0009055 electron carrier activity; PDB: 1UAT_A 1CUO_A 1PLC_A 4PCY_A 3PCY_A 1PND_A 1PNC_A 1JXG_A 6PCY_A 1TKW_A ....
Probab=98.31 E-value=4.2e-06 Score=64.49 Aligned_cols=74 Identities=19% Similarity=0.276 Sum_probs=51.4
Q ss_pred ceeeCCEEEEEe-cCCCCceEEecCcc-cccccCCCCc---c-cccCCCCcceEEEcCCceeEEEEEcCCCCCccccCCc
Q 042860 32 SVHVGDTIIFKH-KFNNSNLYIFKNKN-AFNLCNFSQA---T-LLTNPNSTSYTWHPSRPGFFYFTFNNGSLQTCNKSSQ 105 (235)
Q Consensus 32 tF~VGDtLvF~y-~~~~HsVv~V~~~~-~Y~~Cn~s~p---~-~~s~g~st~~~v~L~~~G~~YFiCssg~~~HC~~~Gq 105 (235)
++++||+|.|.+ +...||++...+.. .-..++.... . ++..|. ++.++++++|.|.|+| .+ |. +.||
T Consensus 20 ~V~~G~tV~~~n~~~~~Hnv~~~~~~~~~~~~~~~~~~~~~~~~~~~G~--~~~~tF~~~G~y~y~C---~P-H~-~~GM 92 (99)
T PF00127_consen 20 TVKAGDTVTFVNNDSMPHNVVFVADGMPAGADSDYVPPGDSSPLLAPGE--TYSVTFTKPGTYEYYC---TP-HY-EAGM 92 (99)
T ss_dssp EEETTEEEEEEEESSSSBEEEEETTSSHTTGGHCHHSTTCEEEEBSTTE--EEEEEEESSEEEEEEE---TT-TG-GTTS
T ss_pred EECCCCEEEEEECCCCCceEEEecccccccccccccCccccceecCCCC--EEEEEeCCCeEEEEEc---CC-Cc-ccCC
Confidence 789999999999 45679999863111 0112222111 1 234443 3677888999999999 36 99 9999
Q ss_pred eeEEEEe
Q 042860 106 KLSIKVS 112 (235)
Q Consensus 106 Kl~I~V~ 112 (235)
|..|+|.
T Consensus 93 ~G~i~V~ 99 (99)
T PF00127_consen 93 VGTIIVE 99 (99)
T ss_dssp EEEEEEE
T ss_pred EEEEEEC
Confidence 9999985
No 7
>COG3794 PetE Plastocyanin [Energy production and conversion]
Probab=98.24 E-value=5.1e-06 Score=68.23 Aligned_cols=69 Identities=22% Similarity=0.213 Sum_probs=51.9
Q ss_pred ceeeCCEEEEEecCC-CCceEEecCcccccccCCC-CcccccCCCCcceEEEcCCceeEEEEEcCCCCCccccCCceeEE
Q 042860 32 SVHVGDTIIFKHKFN-NSNLYIFKNKNAFNLCNFS-QATLLTNPNSTSYTWHPSRPGFFYFTFNNGSLQTCNKSSQKLSI 109 (235)
Q Consensus 32 tF~VGDtLvF~y~~~-~HsVv~V~~~~~Y~~Cn~s-~p~~~s~g~st~~~v~L~~~G~~YFiCssg~~~HC~~~GqKl~I 109 (235)
++.+||++.|.+... .|||... ... +.- ...+..+.|. +|+.+++++|.|.|+| .-|= ..|||-.|
T Consensus 57 ~v~pGDTVtw~~~d~~~Hnv~~~-~~~-----~~~g~~~~~~~~~~-s~~~Tfe~~G~Y~Y~C----~PH~-~~gM~G~I 124 (128)
T COG3794 57 TVKPGDTVTWVNTDSVGHNVTAV-GGM-----DPEGSGTLKAGINE-SFTHTFETPGEYTYYC----TPHP-GMGMKGKI 124 (128)
T ss_pred EECCCCEEEEEECCCCCceEEEe-CCC-----CcccccccccCCCc-ceEEEecccceEEEEe----ccCC-CCCcEEEE
Confidence 899999999999876 7999986 222 111 1112233233 4889999999999999 5788 89999999
Q ss_pred EEe
Q 042860 110 KVS 112 (235)
Q Consensus 110 ~V~ 112 (235)
.|.
T Consensus 125 vV~ 127 (128)
T COG3794 125 VVG 127 (128)
T ss_pred EeC
Confidence 985
No 8
>TIGR02375 pseudoazurin pseudoazurin. Pseudoazurin, also called cupredoxin, is a small, blue periplasmic protein with a single bound copper atom. Pseudoazurin is related plastocyanins. Several examples of pseudoazurin are encoded by a neighboring gene for, or have been shown to transfer electrons to, copper-containing nitrite reductases (TIGR02376) of the same species.
Probab=98.10 E-value=1.6e-05 Score=64.07 Aligned_cols=71 Identities=17% Similarity=0.131 Sum_probs=51.7
Q ss_pred ceeeCCEEEEEecCCCCceEEecCcccccccCCCCcccccCCCCcceEEEcCCceeEEEEEcCCCCCccccCCceeEEEE
Q 042860 32 SVHVGDTIIFKHKFNNSNLYIFKNKNAFNLCNFSQATLLTNPNSTSYTWHPSRPGFFYFTFNNGSLQTCNKSSQKLSIKV 111 (235)
Q Consensus 32 tF~VGDtLvF~y~~~~HsVv~V~~~~~Y~~Cn~s~p~~~s~g~st~~~v~L~~~G~~YFiCssg~~~HC~~~GqKl~I~V 111 (235)
++++||+|.|.+....|||..+. ....+ ....+..+....|+++++++|.|-|+| ..|= ..|||..|+|
T Consensus 18 ~V~~GdTV~f~n~d~~Hnv~~~~-~~~p~-----g~~~~~s~~g~~~~~tF~~~G~Y~Y~C----~pH~-~~GM~G~V~V 86 (116)
T TIGR02375 18 RAAPGDTVTFVPTDKGHNVETIK-GMIPE-----GAEAFKSKINEEYTVTVTEEGVYGVKC----TPHY-GMGMVALIQV 86 (116)
T ss_pred EECCCCEEEEEECCCCeeEEEcc-CCCcC-----CcccccCCCCCEEEEEeCCCEEEEEEc----CCCc-cCCCEEEEEE
Confidence 78999999999987779998641 11111 011122222235899999999999999 4898 9999999999
Q ss_pred ec
Q 042860 112 SA 113 (235)
Q Consensus 112 ~~ 113 (235)
..
T Consensus 87 g~ 88 (116)
T TIGR02375 87 GD 88 (116)
T ss_pred CC
Confidence 66
No 9
>TIGR02657 amicyanin amicyanin. Members of this family are amicyanin, a type I blue copper protein that accepts electrons from the tryptophan tryptophylquinone (TTQ) cofactor of the methylamine dehydrogenase light chain and then transfers them to the heme group of cytochrome c-551i. Amicyanin, methylamine dehydrogenase, and cytochrome c-551i are periplasmic and form a complex. This system has been studied primarily in Paracoccus denitrificans and Methylobacterium extorquens. Related type I blue copper proteins include plastocyanin, pseudoazurin, halocyanin, etc.
Probab=97.40 E-value=0.001 Score=49.74 Aligned_cols=69 Identities=13% Similarity=0.244 Sum_probs=46.0
Q ss_pred ceeeCCEEEEEecCC-CCceEEecCcccccccCCCCcccccCCCCcceEEEcCCceeEEEEEcCCCCCccccCCceeEEE
Q 042860 32 SVHVGDTIIFKHKFN-NSNLYIFKNKNAFNLCNFSQATLLTNPNSTSYTWHPSRPGFFYFTFNNGSLQTCNKSSQKLSIK 110 (235)
Q Consensus 32 tF~VGDtLvF~y~~~-~HsVv~V~~~~~Y~~Cn~s~p~~~s~g~st~~~v~L~~~G~~YFiCssg~~~HC~~~GqKl~I~ 110 (235)
++++||+|.|+.+.. .|||... +.. ...=+. ....+..+. .|+++++++|.|-|.|. -|= .||-.|.
T Consensus 14 ~v~~GdtVt~~N~d~~~Hnv~~~-~g~-~~~~~~-~~~~~~~g~--~~~~tf~~~G~y~y~C~----~Hp---~M~G~v~ 81 (83)
T TIGR02657 14 HVKVGDTVTWINREAMPHNVHFV-AGV-LGEAAL-KGPMMKKEQ--AYSLTFTEAGTYDYHCT----PHP---FMRGKVV 81 (83)
T ss_pred EECCCCEEEEEECCCCCccEEec-CCC-Cccccc-cccccCCCC--EEEEECCCCEEEEEEcC----CCC---CCeEEEE
Confidence 688999999998753 6999864 221 111011 111233332 48899999999999993 454 5999988
Q ss_pred Ee
Q 042860 111 VS 112 (235)
Q Consensus 111 V~ 112 (235)
|.
T Consensus 82 V~ 83 (83)
T TIGR02657 82 VE 83 (83)
T ss_pred EC
Confidence 84
No 10
>TIGR03095 rusti_cyanin rusticyanin. Rusticyanin is a blue copper protein, described in an obligate acidophilic chemolithoautroph, Acidithiobacillus ferrooxidans, as an electron transfer protein. It can constitute up to 5 percent of protein in cells grown on Fe(II) and is thought to be part of an electron chain for Fe(II) oxidation, with two c-type cytochromes, an aa3-type cytochrome oxidase, and 02 as terminal electron acceptor. It is rather closely related to sulfocyanin (TIGR03094).
Probab=97.40 E-value=0.0012 Score=55.17 Aligned_cols=76 Identities=18% Similarity=0.202 Sum_probs=49.2
Q ss_pred ceeeCCEEEEEecCC----CCceEEecCccccc------------ccCCCCcccccCCC--CcceEEEcCCceeEEEEEc
Q 042860 32 SVHVGDTIIFKHKFN----NSNLYIFKNKNAFN------------LCNFSQATLLTNPN--STSYTWHPSRPGFFYFTFN 93 (235)
Q Consensus 32 tF~VGDtLvF~y~~~----~HsVv~V~~~~~Y~------------~Cn~s~p~~~s~g~--st~~~v~L~~~G~~YFiCs 93 (235)
+++.||++.|...+. .|+.........+. .|....+ ...|. ...++|+++++|+|||.|.
T Consensus 55 ~v~~Gd~V~v~v~N~~~~~~H~~~I~~~g~~~~~~p~mdG~~~~~~~~i~p~--~~~g~~~~~~~tf~f~~aGtywyhC~ 132 (148)
T TIGR03095 55 VIPEGVTVHFTVINTDTDSGHNFDISKRGPPYPYMPGMDGLGFVAGTGFLPP--PKSGKFGYTDFTYHFSTAGTYWYLCT 132 (148)
T ss_pred EEcCCCEEEEEEEeCCCCccccEEeecCCCccccccccCCCCccccCcccCC--CCCCccceeEEEEECCCCeEEEEEcC
Confidence 468899999988653 57777742111121 1111000 01110 1357889999999999994
Q ss_pred CCCCCccccCCceeEEEEe
Q 042860 94 NGSLQTCNKSSQKLSIKVS 112 (235)
Q Consensus 94 sg~~~HC~~~GqKl~I~V~ 112 (235)
..+|= ++||+-.|.|.
T Consensus 133 --~pgH~-~~GM~G~iiV~ 148 (148)
T TIGR03095 133 --YPGHA-ENGMYGKIVVK 148 (148)
T ss_pred --ChhHH-HCCCEEEEEEC
Confidence 89998 99999888873
No 11
>PF00812 Ephrin: Ephrin; InterPro: IPR001799 Ephrins are a family of proteins [] that are ligands of class V (EPH-related) receptor protein-tyrosine kinases (see IPR001426 from INTERPRO). These receptors and their ligands have been implicated in regulating neuronal axon guidance and in patterning of the developing nervous system and may also serve a patterning and compartmentalisation role outside of the nervous system as well. Ephrins are membrane-attached proteins of 205 to 340 residues. Attachment appears to be crucial for their normal function. Type-A ephrins are linked to the membrane via a glycosylphosphatidylinositol (GPI)-linkage, while type-B ephrins are type-I membrane proteins.; GO: 0016020 membrane; PDB: 3HEI_P 3CZU_B 3MBW_B 1KGY_E 1IKO_P 2WO3_B 2I85_A 2VSK_B 3GXU_B 2VSM_B ....
Probab=97.00 E-value=0.00093 Score=55.98 Aligned_cols=80 Identities=23% Similarity=0.459 Sum_probs=49.1
Q ss_pred ceeeCCEEEEEecC-----------CCCceEEecCcccccccCCCC-cc-c--ccCCC----CcceEEEcC---------
Q 042860 32 SVHVGDTIIFKHKF-----------NNSNLYIFKNKNAFNLCNFSQ-AT-L--LTNPN----STSYTWHPS--------- 83 (235)
Q Consensus 32 tF~VGDtLvF~y~~-----------~~HsVv~V~~~~~Y~~Cn~s~-p~-~--~s~g~----st~~~v~L~--------- 83 (235)
.+++||.|-+--.. ....+++| ++++|+.|+... .. + -+.+. ...|++++-
T Consensus 25 ~V~i~D~ldIiCP~~~~~~~~~~~~E~~~lY~V-s~~~y~~C~~~~~~~~l~~C~~P~~~~~~~kft~kFq~fSP~p~G~ 103 (145)
T PF00812_consen 25 EVRIGDYLDIICPHYEPGGPPPEEYEYYILYMV-SEEGYESCSLTSRPRLLWECDRPEAPHGPKKFTIKFQEFSPFPLGL 103 (145)
T ss_dssp EE-TTEEEEEEE--SSSSSSSCSSS-BEEEEEE--HHHHHHTBSSTSEEEEEEE-TTTSTTSSEEEEEESSSS-SSTTSS
T ss_pred EecCCCEEEEECCCCCCCCCCCCCceEEEEEEE-cHHHhcccCCCCCCcEEEEeCCCCCCCCCcEEEEEEEECCCCCCCe
Confidence 57889999987532 24568887 999999999643 32 2 23332 234555442
Q ss_pred --Ccee-EEEEEcCC---------CCCccccCCceeEEEEe
Q 042860 84 --RPGF-FYFTFNNG---------SLQTCNKSSQKLSIKVS 112 (235)
Q Consensus 84 --~~G~-~YFiCssg---------~~~HC~~~GqKl~I~V~ 112 (235)
++|. ||||+++. .+|-|..+.|||.|.|.
T Consensus 104 EF~pG~~YY~ISts~g~~~g~~~~~gG~C~~~~mkl~~~v~ 144 (145)
T PF00812_consen 104 EFQPGHDYYYISTSTGTQEGLDNRRGGLCLSHNMKLRIKVG 144 (145)
T ss_dssp S--TTEEEEEEEEESSSSTTTTSSBSCHHHEEEEEEEEECT
T ss_pred eecCCCeEEEEEccCCCCCCcccccccccCcCeeEEEEecC
Confidence 4565 99998642 13448777899999874
No 12
>KOG3858 consensus Ephrin, ligand for Eph receptor tyrosine kinase [Signal transduction mechanisms]
Probab=96.65 E-value=0.0092 Score=53.68 Aligned_cols=78 Identities=22% Similarity=0.475 Sum_probs=44.9
Q ss_pred eeeCCEEEEE---ecC------CCCceEEecCcccccccCC-CCcc-c--ccCCC---------------CcceEEEcCC
Q 042860 33 VHVGDTIIFK---HKF------NNSNLYIFKNKNAFNLCNF-SQAT-L--LTNPN---------------STSYTWHPSR 84 (235)
Q Consensus 33 F~VGDtLvF~---y~~------~~HsVv~V~~~~~Y~~Cn~-s~p~-~--~s~g~---------------st~~~v~L~~ 84 (235)
+++||.|-+- |+. +..=+|+| ++++|+.|+. +.+. + -+... ...+.| +
T Consensus 47 v~igD~ldIiCP~~e~~~~~~~E~yilYmV-~~~~y~~C~~~s~~~~~~~C~rP~~~~kfsikFq~ftP~p~G~EF---~ 122 (233)
T KOG3858|consen 47 VQIGDYLDIICPHYEEGGPEGYEYYILYMV-SEEEYDLCELRSKPFKRWECNRPSTPLKFSIKFQRFTPFPLGFEF---Q 122 (233)
T ss_pred eccCCEEEEECCCCCCCCCCcceEEEEEEe-ChHHhhhhhccCCCcEEEEecCCCcchhhhhhheecCCCCCCccc---c
Confidence 4557777665 332 11235665 9999999997 3332 1 12221 111222 4
Q ss_pred cee-EEEEEcCC---------CCCccccCCceeEEEEecc
Q 042860 85 PGF-FYFTFNNG---------SLQTCNKSSQKLSIKVSAV 114 (235)
Q Consensus 85 ~G~-~YFiCssg---------~~~HC~~~GqKl~I~V~~~ 114 (235)
+|. ||||+++. .++-|-...||+.++|...
T Consensus 123 pG~~YY~IStStg~~~g~~~~~ggvc~~~~mk~~~~V~~~ 162 (233)
T KOG3858|consen 123 PGHTYYYISTSTGDAEGLCNLRGGVCVTRNMKLLMKVGQS 162 (233)
T ss_pred CCCeEEEEeCCCccccccchhhCCEeccCCceEEEEeccc
Confidence 565 88998642 2345544569999999874
No 13
>PF06525 SoxE: Sulfocyanin (SoxE); InterPro: IPR010532 Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterised as functionally different are the rusticyanins.
Probab=95.89 E-value=0.046 Score=48.04 Aligned_cols=80 Identities=19% Similarity=0.147 Sum_probs=51.7
Q ss_pred eeeCCEEEEEecC---CCCceEEecCcccccccCCC---Ccccc----c----------CCCCcceEEEcCCceeEEEEE
Q 042860 33 VHVGDTIIFKHKF---NNSNLYIFKNKNAFNLCNFS---QATLL----T----------NPNSTSYTWHPSRPGFFYFTF 92 (235)
Q Consensus 33 F~VGDtLvF~y~~---~~HsVv~V~~~~~Y~~Cn~s---~p~~~----s----------~g~st~~~v~L~~~G~~YFiC 92 (235)
+-+|-++.|+|.+ -.||++.|.+...+..|..- +.+++ + .|.+....+.-.++|.||+.|
T Consensus 90 VPAGw~V~i~f~N~~~l~Hnl~iv~~~~~~p~~~~i~~DgkIl~~~G~s~~~~~~~GI~~G~s~~~~~~~l~aG~YwlvC 169 (196)
T PF06525_consen 90 VPAGWNVQITFTNQESLPHNLVIVQNDTPTPNNPPISSDGKILLYVGASPGNYTSNGISSGQSASGVYNDLPAGYYWLVC 169 (196)
T ss_pred EcCCCEEEEEEEcCCCCCeeEEEEeCCCCCCCccccCCCCceeeeccCCCCccccCCccCCceeeEEEccCCCceEEEEc
Confidence 4568888888854 35999998665555554321 12211 1 122211123223689999999
Q ss_pred cCCCCCccccCCceeEEEEeccC
Q 042860 93 NNGSLQTCNKSSQKLSIKVSAVS 115 (235)
Q Consensus 93 ssg~~~HC~~~GqKl~I~V~~~~ 115 (235)
+..+|- +.||-..+.|...-
T Consensus 170 --~ipGHA-~sGMw~~LiVs~~v 189 (196)
T PF06525_consen 170 --GIPGHA-ESGMWGVLIVSSNV 189 (196)
T ss_pred --cCCChh-hcCCEEEEEEecCc
Confidence 699999 99999999998743
No 14
>TIGR03096 nitroso_cyanin nitrosocyanin. Nitrosocyanin, as described from the obligate chemolithoautotroph Nitrosomonas europaea, is a red copper protein of unknown function with sequence similarity to a number of blue copper redox proteins.
Probab=95.81 E-value=0.035 Score=46.14 Aligned_cols=56 Identities=11% Similarity=0.233 Sum_probs=37.7
Q ss_pred ceeeCCEEEEEecCC---CCceEEecCcccccccCCCCcccccCCCCcceEEEcCCceeEEEEEcCCCCCcc
Q 042860 32 SVHVGDTIIFKHKFN---NSNLYIFKNKNAFNLCNFSQATLLTNPNSTSYTWHPSRPGFFYFTFNNGSLQTC 100 (235)
Q Consensus 32 tF~VGDtLvF~y~~~---~HsVv~V~~~~~Y~~Cn~s~p~~~s~g~st~~~v~L~~~G~~YFiCssg~~~HC 100 (235)
++++||.+.+++.+. .|++.. .+|+ . ...+..|.+.+++++.+++|.|.|+| .-||
T Consensus 64 ~VkaGD~Vtl~vtN~d~~~H~f~i----~~~g---i--s~~I~pGet~TitF~adKpG~Y~y~C----~~HP 122 (135)
T TIGR03096 64 VVKKGTPVKVTVENKSPISEGFSI----DAYG---I--SEVIKAGETKTISFKADKAGAFTIWC----QLHP 122 (135)
T ss_pred EECCCCEEEEEEEeCCCCccceEE----CCCC---c--ceEECCCCeEEEEEECCCCEEEEEeC----CCCC
Confidence 689999998877542 366554 1232 1 12344455556788889999999999 6788
No 15
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=94.42 E-value=0.044 Score=42.20 Aligned_cols=64 Identities=20% Similarity=0.340 Sum_probs=31.3
Q ss_pred ceeeCC--EEEEEecC-CCCceEEecCcccccccCCCCcccccCCCCcceEEEcCCceeEEEEEcCCCCCccccCCceeE
Q 042860 32 SVHVGD--TIIFKHKF-NNSNLYIFKNKNAFNLCNFSQATLLTNPNSTSYTWHPSRPGFFYFTFNNGSLQTCNKSSQKLS 108 (235)
Q Consensus 32 tF~VGD--tLvF~y~~-~~HsVv~V~~~~~Y~~Cn~s~p~~~s~g~st~~~v~L~~~G~~YFiCssg~~~HC~~~GqKl~ 108 (235)
+++.|+ +|+|+... ..|++.. .+ ......+..|.+.+++|+.+++|.|=|+| .-|. . ||-.
T Consensus 38 ~v~~G~~v~l~~~N~~~~~h~~~i--~~-------~~~~~~l~~g~~~~~~f~~~~~G~y~~~C----~~~~--~-m~G~ 101 (104)
T PF13473_consen 38 TVKAGQPVTLTFTNNDSRPHEFVI--PD-------LGISKVLPPGETATVTFTPLKPGEYEFYC----TMHP--N-MKGT 101 (104)
T ss_dssp EEETTCEEEEEEEE-SSS-EEEEE--GG-------GTEEEEE-TT-EEEEEEEE-S-EEEEEB-----SSS---T-TB--
T ss_pred EEcCCCeEEEEEEECCCCcEEEEE--CC-------CceEEEECCCCEEEEEEcCCCCEEEEEEc----CCCC--c-ceec
Confidence 789999 55555543 4477764 22 11112456665555566669999999999 3555 3 7777
Q ss_pred EEE
Q 042860 109 IKV 111 (235)
Q Consensus 109 I~V 111 (235)
|+|
T Consensus 102 liV 104 (104)
T PF13473_consen 102 LIV 104 (104)
T ss_dssp ---
T ss_pred ccC
Confidence 665
No 16
>TIGR02695 azurin azurin. Azurin is a blue copper-binding protein in the plastocyanin/azurin family (see Pfam model pfam00127). It serves as a redox partner to enzymes such as nitrite reductase or arsenite oxidase. The most closely related copper-binding proteins to this family are auracyanins, as in Chloroflexus aurantiacus, which have similar redox activities.
Probab=93.55 E-value=0.27 Score=40.50 Aligned_cols=37 Identities=19% Similarity=0.185 Sum_probs=25.9
Q ss_pred ccCCCCcceEEEcC--Ccee-EEEEEcCCCCCccccCCceeEEE
Q 042860 70 LTNPNSTSYTWHPS--RPGF-FYFTFNNGSLQTCNKSSQKLSIK 110 (235)
Q Consensus 70 ~s~g~st~~~v~L~--~~G~-~YFiCssg~~~HC~~~GqKl~I~ 110 (235)
+..|.+++++|+.. ++|. |=|+|+ .++|= ..||-.++
T Consensus 85 iggGes~svtF~~~~l~~g~~Y~f~CS--FPGH~--~~MkG~l~ 124 (125)
T TIGR02695 85 IGGGEKTSVTFDVSKLSAGEDYTFFCS--FPGHW--AMMRGTVK 124 (125)
T ss_pred cCCCceEEEEEECCCCCCCCcceEEEc--CCCcH--HhceEEEe
Confidence 34455555666654 4776 889995 99997 57987765
No 17
>TIGR03094 sulfo_cyanin sulfocyanin. Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterized as functionally different are the rustacyanins.
Probab=93.51 E-value=0.42 Score=41.90 Aligned_cols=78 Identities=15% Similarity=0.161 Sum_probs=48.1
Q ss_pred eeCCEEEEEec---CCCCceEEecCcccccc-cCCC-C-cc----------cc----cCCCCcceEEEcCCceeEEEEEc
Q 042860 34 HVGDTIIFKHK---FNNSNLYIFKNKNAFNL-CNFS-Q-AT----------LL----TNPNSTSYTWHPSRPGFFYFTFN 93 (235)
Q Consensus 34 ~VGDtLvF~y~---~~~HsVv~V~~~~~Y~~-Cn~s-~-p~----------~~----s~g~st~~~v~L~~~G~~YFiCs 93 (235)
-.|=++.++|. .-.||...|.+...+-+ -+.. + .+ .+ +.|.+....+.-.++|.||++|
T Consensus 90 PaGw~V~V~f~N~e~~pHnl~iv~n~t~~P~~~~~s~dgkil~~vG~~~s~~~~NGi~~Gqs~sg~~~~~~~G~YwlvC- 168 (195)
T TIGR03094 90 PAGWNVYVTFTNYESLPHNLKLLPNSTQTPRGPIWAHTGKIINSTGATTSIYYGNGISSGHSRSGWWNDTSAGKYWLVC- 168 (195)
T ss_pred eCCCEEEEEEEcCCCCCccEEEecCCCCCCCccccccCceeEeecccccCccccccccccceeEEEeccCCCeeEEEEc-
Confidence 34555655553 34599998865543321 1221 1 11 11 1233333344445899999999
Q ss_pred CCCCCccccCCceeEEEEecc
Q 042860 94 NGSLQTCNKSSQKLSIKVSAV 114 (235)
Q Consensus 94 sg~~~HC~~~GqKl~I~V~~~ 114 (235)
|..+|- +.||-..+.|++.
T Consensus 169 -gipGHA-esGMw~~lIVSs~ 187 (195)
T TIGR03094 169 -GITGHA-ESGMWAVVIVSSN 187 (195)
T ss_pred -ccCChh-hcCcEEEEEEecC
Confidence 699999 9999999988874
No 18
>COG4454 Uncharacterized copper-binding protein [Inorganic ion transport and metabolism]
Probab=92.59 E-value=0.24 Score=42.21 Aligned_cols=76 Identities=17% Similarity=0.114 Sum_probs=53.1
Q ss_pred ceeeCCEEEEEecCC---CCceEEecCccc-----------cc--ccCCCCcccccCCCCcceEEEcCCceeEEEEEcCC
Q 042860 32 SVHVGDTIIFKHKFN---NSNLYIFKNKNA-----------FN--LCNFSQATLLTNPNSTSYTWHPSRPGFFYFTFNNG 95 (235)
Q Consensus 32 tF~VGDtLvF~y~~~---~HsVv~V~~~~~-----------Y~--~Cn~s~p~~~s~g~st~~~v~L~~~G~~YFiCssg 95 (235)
+++.|-+++|.-++. .|..... +.+ .+ .=+..+.+.+..|.+..++|.+.++|.|=|+|.
T Consensus 66 ~v~aG~tv~~v~~n~~el~hef~~~--~~~~~~~~~~~~~~~~Dme~d~~~~v~L~PG~s~elvv~ft~~g~ye~~C~-- 141 (158)
T COG4454 66 EVKAGETVRFVLKNEGELKHEFTMD--APDKNLEHVTHMILADDMEHDDPNTVTLAPGKSGELVVVFTGAGKYEFACN-- 141 (158)
T ss_pred cccCCcEEeeeecCcccceEEEecc--CccccchhHHHhhhCCccccCCcceeEeCCCCcEEEEEEecCCccEEEEec--
Confidence 678888888876542 2544431 111 11 112222334677777788999999999999995
Q ss_pred CCCccccCCceeEEEEe
Q 042860 96 SLQTCNKSSQKLSIKVS 112 (235)
Q Consensus 96 ~~~HC~~~GqKl~I~V~ 112 (235)
.++|= +.||...|+|.
T Consensus 142 iPGHy-~AGM~g~itV~ 157 (158)
T COG4454 142 IPGHY-EAGMVGEITVS 157 (158)
T ss_pred CCCcc-cCCcEEEEEeC
Confidence 99999 99999999986
No 19
>TIGR02376 Cu_nitrite_red nitrite reductase, copper-containing. This family consists of copper-type nitrite reductase. It reduces nitrite to nitric oxide, the first step in denitrification.
Probab=91.78 E-value=0.75 Score=42.59 Aligned_cols=77 Identities=17% Similarity=0.172 Sum_probs=50.7
Q ss_pred ceeeCCEEEEEecCC-----CCceEEecCcccccccCCCCc-c-cccCCCCcceEEEcCCceeEEEEEcCC--CCCcccc
Q 042860 32 SVHVGDTIIFKHKFN-----NSNLYIFKNKNAFNLCNFSQA-T-LLTNPNSTSYTWHPSRPGFFYFTFNNG--SLQTCNK 102 (235)
Q Consensus 32 tF~VGDtLvF~y~~~-----~HsVv~V~~~~~Y~~Cn~s~p-~-~~s~g~st~~~v~L~~~G~~YFiCssg--~~~HC~~ 102 (235)
+++.||+|+.++.+. .|++..= -.. ..-..+ . ....|.+-.|.|+++.+|+|||-|... ...|= .
T Consensus 62 rv~~Gd~v~v~v~N~~~~~~~h~~h~H-~~~----~~dg~~~~~~I~PG~t~ty~F~~~~~Gty~YH~H~~~~~~~q~-~ 135 (311)
T TIGR02376 62 RVHEGDYVELTLINPPTNTMPHNVDFH-AAT----GALGGAALTQVNPGETATLRFKATRPGAFVYHCAPPGMVPWHV-V 135 (311)
T ss_pred EEECCCEEEEEEEeCCCCCCceeeeec-CCC----ccCCCCcceeECCCCeEEEEEEcCCCEEEEEEcCCCCchhHHh-h
Confidence 789999999887654 4666641 110 010111 1 245555557888999999999999410 23476 7
Q ss_pred CCceeEEEEecc
Q 042860 103 SSQKLSIKVSAV 114 (235)
Q Consensus 103 ~GqKl~I~V~~~ 114 (235)
.||...|.|...
T Consensus 136 ~Gl~G~liV~~~ 147 (311)
T TIGR02376 136 SGMNGAIMVLPR 147 (311)
T ss_pred cCcceEEEeecc
Confidence 899999999863
No 20
>PRK02888 nitrous-oxide reductase; Validated
Probab=90.72 E-value=1.2 Score=45.47 Aligned_cols=68 Identities=15% Similarity=0.266 Sum_probs=44.7
Q ss_pred ceeeCCEEEEEecCC------CCceEEecCcccccccCCCCcccccCCCCcceEEEcCCceeEEEEEcCCCCCcccc---
Q 042860 32 SVHVGDTIIFKHKFN------NSNLYIFKNKNAFNLCNFSQATLLTNPNSTSYTWHPSRPGFFYFTFNNGSLQTCNK--- 102 (235)
Q Consensus 32 tF~VGDtLvF~y~~~------~HsVv~V~~~~~Y~~Cn~s~p~~~s~g~st~~~v~L~~~G~~YFiCssg~~~HC~~--- 102 (235)
++++||.+.|...+- .|....- .|+ -......|...+++|+.+++|.|||+| ...| .
T Consensus 558 ~Vk~GDeVt~~lTN~d~~~DViHGF~Ip----~~n-----I~~dv~PG~t~svtF~adkPGvy~~~C----tefC-Ga~H 623 (635)
T PRK02888 558 TVKQGDEVTVIVTNLDKVEDLTHGFAIP----NYG-----VNMEVAPQATASVTFTADKPGVYWYYC----TWFC-HALH 623 (635)
T ss_pred EecCCCEEEEEEEeCCcccccccceeec----ccC-----ccEEEcCCceEEEEEEcCCCEEEEEEC----Cccc-ccCc
Confidence 689999999999762 2444431 111 011133444456788899999999999 4457 3
Q ss_pred CCceeEEEEec
Q 042860 103 SSQKLSIKVSA 113 (235)
Q Consensus 103 ~GqKl~I~V~~ 113 (235)
.+|+..|.|.+
T Consensus 624 ~~M~G~~iVep 634 (635)
T PRK02888 624 MEMRGRMLVEP 634 (635)
T ss_pred ccceEEEEEEe
Confidence 36888888865
No 21
>PF00116 COX2: Cytochrome C oxidase subunit II, periplasmic domain This family corresponds to chains b and o.; InterPro: IPR002429 Cytochrome c oxidase (1.9.3.1 from EC) [, ] is an oligomeric enzymatic complex which is a component of the respiratory chain and is involved in the transfer of electrons from cytochrome c to oxygen. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. The number of polypeptides in the complex ranges from 3-4 (prokaryotes), up to 13(mammals). Subunit 2 (CO II) transfers the electrons from cytochrome c to the catalytic subunit 1. It contains two adjacent transmembrane regions in its N terminus and the major part of the protein is exposed to the periplasmic or to the mitochondrial intermembrane space, respectively. CO II provides the substrate-binding site and contains a copper centre called Cu(A), probably the primary acceptor in cytochrome c oxidase. An exception is the corresponding subunit of the cbb3-type oxidase which lacks the copper A redox-centre. Several bacterial CO II have a C-terminal extension that contains a covalently bound haem c.; GO: 0004129 cytochrome-c oxidase activity, 0005507 copper ion binding, 0016020 membrane; PDB: 3OMN_D 3OMA_B 3OMI_D 3OM3_B 3EHB_B 1AR1_B 1QLE_B 3HB3_B 2IWK_B 2IWF_A ....
Probab=89.04 E-value=1.5 Score=35.17 Aligned_cols=66 Identities=17% Similarity=0.297 Sum_probs=40.2
Q ss_pred ceeeCCEEEEEecCC--CCceEEecCcccccccCCCCcccccCCCCcceEEEcCCceeEEEEEcCCCCCccccCC---ce
Q 042860 32 SVHVGDTIIFKHKFN--NSNLYIFKNKNAFNLCNFSQATLLTNPNSTSYTWHPSRPGFFYFTFNNGSLQTCNKSS---QK 106 (235)
Q Consensus 32 tF~VGDtLvF~y~~~--~HsVv~V~~~~~Y~~Cn~s~p~~~s~g~st~~~v~L~~~G~~YFiCssg~~~HC~~~G---qK 106 (235)
.+..|+.+.|+..+. .|+... .+...+ .-.-.|..+.+.++.+++|.|++.| ...| ..| |+
T Consensus 49 ~lp~g~~v~~~ltS~DViHsf~i--p~~~~k-------~d~~PG~~~~~~~~~~~~G~y~~~C----~e~C-G~gH~~M~ 114 (120)
T PF00116_consen 49 VLPAGQPVRFHLTSEDVIHSFWI--PELGIK-------MDAIPGRTNSVTFTPDKPGTYYGQC----AEYC-GAGHSFMP 114 (120)
T ss_dssp EEETTSEEEEEEEESSS-EEEEE--TTCTEE-------EEEBTTCEEEEEEEESSSEEEEEEE-----SSS-STTGGG-E
T ss_pred cccccceEeEEEEcCCccccccc--cccCcc-------cccccccceeeeeeeccCCcEEEcC----cccc-CcCcCCCe
Confidence 468889988888752 355554 111100 0112333345678889999999999 5788 665 77
Q ss_pred eEEEE
Q 042860 107 LSIKV 111 (235)
Q Consensus 107 l~I~V 111 (235)
..|.|
T Consensus 115 ~~v~V 119 (120)
T PF00116_consen 115 GKVIV 119 (120)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 77776
No 22
>PLN02604 oxidoreductase
Probab=85.00 E-value=12 Score=37.59 Aligned_cols=78 Identities=18% Similarity=0.140 Sum_probs=49.9
Q ss_pred ceeeCCEEEEEecCCC----CceEEecCcccccccCCCCcc------cccCCCCcceEEEcCCceeEEEEEcCCCCCccc
Q 042860 32 SVHVGDTIIFKHKFNN----SNLYIFKNKNAFNLCNFSQAT------LLTNPNSTSYTWHPSRPGFFYFTFNNGSLQTCN 101 (235)
Q Consensus 32 tF~VGDtLvF~y~~~~----HsVv~V~~~~~Y~~Cn~s~p~------~~s~g~st~~~v~L~~~G~~YFiCssg~~~HC~ 101 (235)
+++.||+|+++..+.. |++.- -.-.....+..+.. ....|.+-.|.|+++++|+|||=|. ...|-
T Consensus 58 ~~~~Gd~v~v~v~N~l~~~~~~iH~--HG~~~~~~~~~DG~~~~tq~~i~pg~s~~y~f~~~~~Gt~wyH~H--~~~q~- 132 (566)
T PLN02604 58 LAQQGDTVIVELKNSLLTENVAIHW--HGIRQIGTPWFDGTEGVTQCPILPGETFTYEFVVDRPGTYLYHAH--YGMQR- 132 (566)
T ss_pred EEECCCEEEEEEEeCCCCCCCCEEe--CCCCCCCCccccCCCccccCccCCCCeEEEEEEcCCCEEEEEeeC--cHHHH-
Confidence 7899999998886541 33331 11111111111100 1344555568888999999999995 67788
Q ss_pred cCCceeEEEEecc
Q 042860 102 KSSQKLSIKVSAV 114 (235)
Q Consensus 102 ~~GqKl~I~V~~~ 114 (235)
..||.-.|.|...
T Consensus 133 ~~Gl~G~liV~~~ 145 (566)
T PLN02604 133 EAGLYGSIRVSLP 145 (566)
T ss_pred hCCCeEEEEEEec
Confidence 8999999999863
No 23
>TIGR02866 CoxB cytochrome c oxidase, subunit II. Cytochrome c oxidase is the terminal electron acceptor of mitochondria (and one of several possible acceptors in prokaryotes) in the electron transport chain of aerobic respiration. The enzyme couples the oxidation of reduced cytochrome c with the reduction of molecular oxygen to water. This process results in the pumping of four protons across the membrane which are used in the proton gradient powered synthesis of ATP. The oxidase contains two heme a cofactors and three copper atoms as well as other bound ions.
Probab=84.67 E-value=3.5 Score=35.68 Aligned_cols=33 Identities=15% Similarity=0.362 Sum_probs=25.7
Q ss_pred cceEEEcCCceeEEEEEcCCCCCccccC---CceeEEEEec
Q 042860 76 TSYTWHPSRPGFFYFTFNNGSLQTCNKS---SQKLSIKVSA 113 (235)
Q Consensus 76 t~~~v~L~~~G~~YFiCssg~~~HC~~~---GqKl~I~V~~ 113 (235)
+...++.+++|.|++.|+ ..| .. .|++.|.|.+
T Consensus 157 ~~~~~~~~~~G~y~~~c~----e~c-G~~h~~M~~~v~v~~ 192 (201)
T TIGR02866 157 NALWFNADEPGVYYGYCA----ELC-GAGHSLMLFKVVVVE 192 (201)
T ss_pred EEEEEEeCCCEEEEEEeh----hhC-CcCccCCeEEEEEEC
Confidence 345678899999999994 467 44 4899988876
No 24
>COG1622 CyoA Heme/copper-type cytochrome/quinol oxidases, subunit 2 [Energy production and conversion]
Probab=84.26 E-value=3 Score=37.84 Aligned_cols=33 Identities=12% Similarity=0.253 Sum_probs=26.5
Q ss_pred ceEEEcCCceeEEEEEcCCCCCccccCC---ceeEEEEecc
Q 042860 77 SYTWHPSRPGFFYFTFNNGSLQTCNKSS---QKLSIKVSAV 114 (235)
Q Consensus 77 ~~~v~L~~~G~~YFiCssg~~~HC~~~G---qKl~I~V~~~ 114 (235)
...++.+++|.|+.+| ...| ..| |++.|.|.+.
T Consensus 178 ~~~~~~~~~G~Y~g~C----ae~C-G~gH~~M~~~v~vvs~ 213 (247)
T COG1622 178 ELWLTANKPGTYRGIC----AEYC-GPGHSFMRFKVIVVSQ 213 (247)
T ss_pred EEEEecCCCeEEEEEc----Hhhc-CCCcccceEEEEEEcH
Confidence 4566779999999999 5677 554 9999999874
No 25
>PF07732 Cu-oxidase_3: Multicopper oxidase; InterPro: IPR011707 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 3 (or coupled binuclear) domains. ; GO: 0005507 copper ion binding; PDB: 2QT6_B 3KW7_B 2R7E_A 3CDZ_A 1SDD_A 3G5W_D 3UAC_A 2YXV_A 3OD3_A 3NSY_A ....
Probab=82.50 E-value=5.5 Score=31.64 Aligned_cols=77 Identities=13% Similarity=0.138 Sum_probs=47.6
Q ss_pred ceeeCCEEEEEecCC---CCceEEecCcccccccCCCCc-----c-cccCCCCcceEEEcCC-ceeEEEEEcCCCCCccc
Q 042860 32 SVHVGDTIIFKHKFN---NSNLYIFKNKNAFNLCNFSQA-----T-LLTNPNSTSYTWHPSR-PGFFYFTFNNGSLQTCN 101 (235)
Q Consensus 32 tF~VGDtLvF~y~~~---~HsVv~V~~~~~Y~~Cn~s~p-----~-~~s~g~st~~~v~L~~-~G~~YFiCssg~~~HC~ 101 (235)
+++.||+|..++.+. .+++.. -...+..-...+. . ....|.+-.|.|+++. +|+|||-|. ...|=
T Consensus 29 ~v~~Gd~v~i~~~N~l~~~~siH~--HG~~~~~~~~~DG~~~~~~~~i~pG~~~~Y~~~~~~~~Gt~wYH~H--~~~~~- 103 (117)
T PF07732_consen 29 RVREGDTVRITVTNNLDEPTSIHW--HGLHQPPSPWMDGVPGVTQCPIAPGESFTYEFTANQQAGTYWYHSH--VHGQQ- 103 (117)
T ss_dssp EEETTEEEEEEEEEESSSGBSEEE--ETSBSTTGGGGSGGTTTSGSSBSTTEEEEEEEEESSCSEEEEEEEC--STTHH-
T ss_pred EEEcCCeeEEEEEecccccccccc--ceeeeeeeeecCCcccccceeEEeecceeeeEeeeccccceeEeeC--CCchh-
Confidence 689999999988742 344443 1111111100110 1 1344555568888888 999999995 44465
Q ss_pred cCCceeEEEEec
Q 042860 102 KSSQKLSIKVSA 113 (235)
Q Consensus 102 ~~GqKl~I~V~~ 113 (235)
.+||--.|.|..
T Consensus 104 ~~GL~G~~iV~~ 115 (117)
T PF07732_consen 104 VMGLYGAIIVEP 115 (117)
T ss_dssp HTTEEEEEEEE-
T ss_pred cCcCEEEEEEcC
Confidence 699999998875
No 26
>MTH00047 COX2 cytochrome c oxidase subunit II; Provisional
Probab=78.83 E-value=3.6 Score=35.96 Aligned_cols=34 Identities=24% Similarity=0.352 Sum_probs=27.0
Q ss_pred cceEEEcCCceeEEEEEcCCCCCccccCC---ceeEEEEecc
Q 042860 76 TSYTWHPSRPGFFYFTFNNGSLQTCNKSS---QKLSIKVSAV 114 (235)
Q Consensus 76 t~~~v~L~~~G~~YFiCssg~~~HC~~~G---qKl~I~V~~~ 114 (235)
+...++.+++|.|+..| ...| ..| |++.|+|.+.
T Consensus 156 ~~~~~~~~~~G~y~g~C----~e~C-G~~H~~M~~~v~v~~~ 192 (194)
T MTH00047 156 NHLFFCPDRHGVFVGYC----SELC-GVGHSYMPIVIEVVDV 192 (194)
T ss_pred EEEEEEcCCCEEEEEEe----ehhh-CcCcccCcEEEEEEcC
Confidence 34567789999999999 5688 554 8999998874
No 27
>TIGR03388 ascorbase L-ascorbate oxidase, plant type. Members of this protein family are the copper-containing enzyme L-ascorbate oxidase (EC 1.10.3.3), also called ascorbase. This family is found in flowering plants, and shows greater sequence similarity to a family of laccases (EC 1.10.3.2) from plants than to other known ascorbate oxidases.
Probab=71.29 E-value=17 Score=36.13 Aligned_cols=78 Identities=14% Similarity=0.106 Sum_probs=48.9
Q ss_pred ceeeCCEEEEEecCCC----CceEEecCcc-cccccCCCC-cc----cccCCCCcceEEEcCCceeEEEEEcCCCCCccc
Q 042860 32 SVHVGDTIIFKHKFNN----SNLYIFKNKN-AFNLCNFSQ-AT----LLTNPNSTSYTWHPSRPGFFYFTFNNGSLQTCN 101 (235)
Q Consensus 32 tF~VGDtLvF~y~~~~----HsVv~V~~~~-~Y~~Cn~s~-p~----~~s~g~st~~~v~L~~~G~~YFiCssg~~~HC~ 101 (235)
+++.||.|+++..++. +++.- -.- -..+..... +. ....|.+-.|.|+++.+|+|||-|. ...|-
T Consensus 35 ~~~~Gd~v~v~v~N~l~~~~t~iHw--HGl~~~~~~~~DG~~~vtq~~I~PG~s~~y~f~~~~~Gt~wyH~H--~~~q~- 109 (541)
T TIGR03388 35 RAQAGDTIVVELTNKLHTEGVVIHW--HGIRQIGTPWADGTAGVTQCAINPGETFIYNFVVDRPGTYFYHGH--YGMQR- 109 (541)
T ss_pred EEEcCCEEEEEEEECCCCCCccEEe--cCcCCcCCcccCCCCccccCCcCCCCEEEEEEEcCCCEEEEEEec--chHHh-
Confidence 7899999999876542 22221 000 000111111 00 1344455568888999999999995 56788
Q ss_pred cCCceeEEEEecc
Q 042860 102 KSSQKLSIKVSAV 114 (235)
Q Consensus 102 ~~GqKl~I~V~~~ 114 (235)
..||.-.|.|...
T Consensus 110 ~~Gl~G~liV~~~ 122 (541)
T TIGR03388 110 SAGLYGSLIVDVP 122 (541)
T ss_pred hccceEEEEEecC
Confidence 8999999999864
No 28
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=61.01 E-value=71 Score=34.17 Aligned_cols=12 Identities=33% Similarity=0.592 Sum_probs=5.5
Q ss_pred CCCCCCCCCccc
Q 042860 193 PTGEVDSATIRP 204 (235)
Q Consensus 193 p~~~~~~~~~~p 204 (235)
|.|..--++++|
T Consensus 600 ~~gm~pmaPvlP 611 (1102)
T KOG1924|consen 600 PPGMFPMAPVLP 611 (1102)
T ss_pred CCCcccccccCC
Confidence 344444445554
No 29
>MTH00140 COX2 cytochrome c oxidase subunit II; Provisional
Probab=60.60 E-value=13 Score=32.98 Aligned_cols=33 Identities=21% Similarity=0.576 Sum_probs=25.6
Q ss_pred cceEEEcCCceeEEEEEcCCCCCccccCC---ceeEEEEec
Q 042860 76 TSYTWHPSRPGFFYFTFNNGSLQTCNKSS---QKLSIKVSA 113 (235)
Q Consensus 76 t~~~v~L~~~G~~YFiCssg~~~HC~~~G---qKl~I~V~~ 113 (235)
+...++.+++|.||..| ..-| ..| |++.|.|..
T Consensus 180 ~~~~~~~~~~g~y~~~C----~e~C-G~~H~~M~~~v~v~~ 215 (228)
T MTH00140 180 NQLSFEPKRPGVFYGQC----SEIC-GANHSFMPIVVEAVP 215 (228)
T ss_pred eeEEEEeCCCEEEEEEC----cccc-CcCcCCCeEEEEEEC
Confidence 34566779999999999 4588 655 888888875
No 30
>TIGR01480 copper_res_A copper-resistance protein, CopA family. This model represents the CopA copper resistance protein family. CopA is related to laccase (benzenediol:oxygen oxidoreductase) and L-ascorbate oxidase, both copper-containing enzymes. Most members have a typical TAT (twin-arginine translocation) signal sequence with an Arg-Arg pair. Twin-arginine translocation is observed for a large number of periplasmic proteins that cross the inner membrane with metal-containing cofactors already bound. The combination of copper-binding sites and TAT translocation motif suggests a mechansism of resistance by packaging and export.
Probab=60.14 E-value=24 Score=35.85 Aligned_cols=75 Identities=8% Similarity=0.110 Sum_probs=47.9
Q ss_pred ceeeCCEEEEEecCC---CCceE------EecCccc-ccccCCCCcccccCCCCcceEEEcCCceeEEEEEcCCCCCccc
Q 042860 32 SVHVGDTIIFKHKFN---NSNLY------IFKNKNA-FNLCNFSQATLLTNPNSTSYTWHPSRPGFFYFTFNNGSLQTCN 101 (235)
Q Consensus 32 tF~VGDtLvF~y~~~---~HsVv------~V~~~~~-Y~~Cn~s~p~~~s~g~st~~~v~L~~~G~~YFiCssg~~~HC~ 101 (235)
+++.||.+++.+.+. .|.+. ++.+... |.. ..+.+....+.+.+|.|.++.+|.++|=|- ...|=
T Consensus 502 ~v~~Gervri~l~N~t~~~HpmHlHG~~f~v~~~~G~~~~--~~dTv~V~Pg~t~~~~f~ad~pG~w~~HCH--~l~H~- 576 (587)
T TIGR01480 502 RFNYGERLRVVLVNDTMMAHPIHLHGMWSELEDGQGEFQV--RKHTVDVPPGGKRSFRVTADALGRWAYHCH--MLLHM- 576 (587)
T ss_pred EecCCCEEEEEEECCCCCCcceeEcCceeeeecCCCcccc--cCCceeeCCCCEEEEEEECCCCeEEEEcCC--CHHHH-
Confidence 699999999998752 23332 2211111 110 001123444555578888999999999995 78888
Q ss_pred cCCceeEEEE
Q 042860 102 KSSQKLSIKV 111 (235)
Q Consensus 102 ~~GqKl~I~V 111 (235)
+.||--.|.|
T Consensus 577 ~~GM~~~~~v 586 (587)
T TIGR01480 577 EAGMFREVTV 586 (587)
T ss_pred hCcCcEEEEe
Confidence 8999877776
No 31
>TIGR03511 GldH_lipo gliding motility-associated lipoprotein GldH. Members of this protein family are predicted lipoproteins, exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). Members include GldH, a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family may have gliding motility.
Probab=54.77 E-value=33 Score=29.03 Aligned_cols=56 Identities=20% Similarity=0.350 Sum_probs=32.0
Q ss_pred HHHHHHHhhhcccce-EEEec---CCCCCCCCceeeCCEEEEEecC----CCCce-EEecCcccccccCC
Q 042860 4 IFLVLFLLSQQAQSA-TIFVD---GISEWKNPSVHVGDTIIFKHKF----NNSNL-YIFKNKNAFNLCNF 64 (235)
Q Consensus 4 ~~~ll~ll~~~a~A~-~~~VG---g~~GW~~ptF~VGDtLvF~y~~----~~HsV-v~V~~~~~Y~~Cn~ 64 (235)
+++++++|.+|...+ .|..= .+.||.- .|+|.|++.. +.+|+ +.+++..+|.-+|.
T Consensus 10 ~ll~~~ll~sC~~~~~vy~~y~~~p~~~W~k-----~d~l~F~~~~~d~~~~y~l~l~lR~n~~Ypy~nl 74 (156)
T TIGR03511 10 FFLGACVLVSCTENTDVYHSYQSTPHGGWQK-----SDTLDFEIPITDYTASYRLFLLIRNDNRYPYRNL 74 (156)
T ss_pred HHHHHHHhcccCCCCeEEEEeeECCccCcCC-----CCcEEEEEeecCCCCcEEEEEEEEcCCCCcccCe
Confidence 333445566665555 34321 2568974 5777777752 44666 44556666666665
No 32
>cd06555 ASCH_PF0470_like ASC-1 homology domain, subfamily similar to Pyrococcus furiosus Pf0470. The ASCH domain, a small beta-barrel domain found in all three kingdoms of life, resembles the RNA-binding PUA domain and may also interact with RNA. ASCH has been proposed to function as an RNA-binding domain during coactivation, RNA-processing and the regulation of prokaryotic translation.
Probab=54.23 E-value=11 Score=30.19 Aligned_cols=31 Identities=19% Similarity=0.320 Sum_probs=18.4
Q ss_pred CceeeCCEEEEEecC-CCCceEEecCcccccc
Q 042860 31 PSVHVGDTIIFKHKF-NNSNLYIFKNKNAFNL 61 (235)
Q Consensus 31 ptF~VGDtLvF~y~~-~~HsVv~V~~~~~Y~~ 61 (235)
++|++||.|+|+--. +.-=+++|..-..|++
T Consensus 30 ~~ikvGD~I~f~~~~~~~~l~v~V~~i~~Y~s 61 (109)
T cd06555 30 QQIKVGDKILFNDLDTGQQLLVKVVDIRKYDS 61 (109)
T ss_pred hcCCCCCEEEEEEcCCCcEEEEEEEEEEecCC
Confidence 379999999996533 3233344433445543
No 33
>MTH00154 COX2 cytochrome c oxidase subunit II; Provisional
Probab=53.49 E-value=21 Score=31.82 Aligned_cols=32 Identities=19% Similarity=0.455 Sum_probs=24.6
Q ss_pred ceEEEcCCceeEEEEEcCCCCCccccCC---ceeEEEEec
Q 042860 77 SYTWHPSRPGFFYFTFNNGSLQTCNKSS---QKLSIKVSA 113 (235)
Q Consensus 77 ~~~v~L~~~G~~YFiCssg~~~HC~~~G---qKl~I~V~~ 113 (235)
...++.+++|.||..| ..-| ..| |++.|.|.+
T Consensus 181 ~~~~~~~~~G~y~g~C----se~C-G~~H~~M~~~v~vv~ 215 (227)
T MTH00154 181 QLNFLINRPGLFFGQC----SEIC-GANHSFMPIVIESVS 215 (227)
T ss_pred EEEEEEcCceEEEEEe----echh-CcCccCCeEEEEEeC
Confidence 4566779999999999 5678 555 788887765
No 34
>PF02362 B3: B3 DNA binding domain; InterPro: IPR003340 Two DNA binding proteins, RAV1 and RAV2 from Arabidopsis thaliana contain two distinct amino acid sequence domains found only in higher plant species. The N-terminal regions of RAV1 and RAV2 are homologous to the AP2 DNA-binding domain (see IPR001471 from INTERPRO) present in a family of transcription factors, while the C-terminal region exhibits homology to the highly conserved C-terminal domain, designated B3, of VP1/ABI3 transcription factors []. The AP2 and B3-like domains of RAV1 bind autonomously to the CAACA and CACCTG motifs, respectively, and together achieve a high affinity and specificity of binding. It has been suggested that the AP2 and B3-like domains of RAV1 are connected by a highly flexible structure enabling the two domains to bind to the CAACA and CACCTG motifs in various spacings and orientations [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1WID_A 1YEL_A.
Probab=52.70 E-value=9.4 Score=28.30 Aligned_cols=16 Identities=25% Similarity=0.337 Sum_probs=10.1
Q ss_pred CceeeCCEEEEEecCC
Q 042860 31 PSVHVGDTIIFKHKFN 46 (235)
Q Consensus 31 ptF~VGDtLvF~y~~~ 46 (235)
..+++||.++|++..+
T Consensus 72 n~L~~GD~~~F~~~~~ 87 (100)
T PF02362_consen 72 NGLKEGDVCVFELIGN 87 (100)
T ss_dssp CT--TT-EEEEEE-SS
T ss_pred cCCCCCCEEEEEEecC
Confidence 4789999999999864
No 35
>PTZ00047 cytochrome c oxidase subunit II; Provisional
Probab=52.64 E-value=22 Score=30.56 Aligned_cols=31 Identities=16% Similarity=0.260 Sum_probs=23.3
Q ss_pred eEEEcCCceeEEEEEcCCCCCccccC---CceeEEEEec
Q 042860 78 YTWHPSRPGFFYFTFNNGSLQTCNKS---SQKLSIKVSA 113 (235)
Q Consensus 78 ~~v~L~~~G~~YFiCssg~~~HC~~~---GqKl~I~V~~ 113 (235)
+.+..+++|.||..| ..-| .. .|++.|.|..
T Consensus 115 l~~~~~~~G~y~gqC----sElC-G~gHs~M~~~V~vvs 148 (162)
T PTZ00047 115 INTFILREGVFYGQC----SEMC-GTLHGFMPIVVEAVS 148 (162)
T ss_pred EEEecCCCeEEEEEc----chhc-CcCccCceEEEEEeC
Confidence 456678999999999 5677 44 4888877765
No 36
>PLN02191 L-ascorbate oxidase
Probab=52.17 E-value=52 Score=33.21 Aligned_cols=72 Identities=14% Similarity=0.179 Sum_probs=47.6
Q ss_pred ceeeCCEEEEEecCCC---------CceEEecCccccc------ccCCCCcccccCCCCcceEEEcCCceeEEEEEcCCC
Q 042860 32 SVHVGDTIIFKHKFNN---------SNLYIFKNKNAFN------LCNFSQATLLTNPNSTSYTWHPSRPGFFYFTFNNGS 96 (235)
Q Consensus 32 tF~VGDtLvF~y~~~~---------HsVv~V~~~~~Y~------~Cn~s~p~~~s~g~st~~~v~L~~~G~~YFiCssg~ 96 (235)
+++.||+|+.+..+.. |-+.+- ....+| .|- ...|.+-.|+|+++++|+|||=|. .
T Consensus 57 ~~~~Gd~v~v~v~N~l~~~~tsiHwHGl~~~-~~~~~DGv~gvtq~p------I~PG~s~~Y~f~~~~~GT~wYHsH--~ 127 (574)
T PLN02191 57 DAVAGDTIVVHLTNKLTTEGLVIHWHGIRQK-GSPWADGAAGVTQCA------INPGETFTYKFTVEKPGTHFYHGH--Y 127 (574)
T ss_pred EEEcCCEEEEEEEECCCCCCccEECCCCCCC-CCccccCCCccccCC------cCCCCeEEEEEECCCCeEEEEeeC--c
Confidence 7899999998876531 222221 110011 122 334555568899999999999985 6
Q ss_pred CCccccCCceeEEEEec
Q 042860 97 LQTCNKSSQKLSIKVSA 113 (235)
Q Consensus 97 ~~HC~~~GqKl~I~V~~ 113 (235)
..+- ..|+.-.|.|..
T Consensus 128 ~~q~-~~Gl~G~liV~~ 143 (574)
T PLN02191 128 GMQR-SAGLYGSLIVDV 143 (574)
T ss_pred HHHH-hCCCEEEEEEcc
Confidence 6777 899999999974
No 37
>MTH00168 COX2 cytochrome c oxidase subunit II; Provisional
Probab=50.18 E-value=24 Score=31.34 Aligned_cols=32 Identities=22% Similarity=0.473 Sum_probs=24.6
Q ss_pred ceEEEcCCceeEEEEEcCCCCCccccCC---ceeEEEEec
Q 042860 77 SYTWHPSRPGFFYFTFNNGSLQTCNKSS---QKLSIKVSA 113 (235)
Q Consensus 77 ~~~v~L~~~G~~YFiCssg~~~HC~~~G---qKl~I~V~~ 113 (235)
.+.++.+++|.||..| ..-| ..| |++.|.|.+
T Consensus 181 ~~~~~~~~~G~~~g~C----sE~C-G~~Hs~M~~~v~vv~ 215 (225)
T MTH00168 181 QLAFLSSRPGSFYGQC----SEIC-GANHSFMPIVVEFVP 215 (225)
T ss_pred EEEEEcCCCEEEEEEc----cccc-CcCcCCCeEEEEEeC
Confidence 3466779999999999 5678 555 788887765
No 38
>TIGR01480 copper_res_A copper-resistance protein, CopA family. This model represents the CopA copper resistance protein family. CopA is related to laccase (benzenediol:oxygen oxidoreductase) and L-ascorbate oxidase, both copper-containing enzymes. Most members have a typical TAT (twin-arginine translocation) signal sequence with an Arg-Arg pair. Twin-arginine translocation is observed for a large number of periplasmic proteins that cross the inner membrane with metal-containing cofactors already bound. The combination of copper-binding sites and TAT translocation motif suggests a mechansism of resistance by packaging and export.
Probab=50.07 E-value=1.1e+02 Score=31.06 Aligned_cols=75 Identities=9% Similarity=0.113 Sum_probs=45.5
Q ss_pred ceeeCCEEEEEecCCC---CceEEecCcccccccCCCC--cc----cccCCCCcceEEEcCCceeEEEEEcCCCCCcccc
Q 042860 32 SVHVGDTIIFKHKFNN---SNLYIFKNKNAFNLCNFSQ--AT----LLTNPNSTSYTWHPSRPGFFYFTFNNGSLQTCNK 102 (235)
Q Consensus 32 tF~VGDtLvF~y~~~~---HsVv~V~~~~~Y~~Cn~s~--p~----~~s~g~st~~~v~L~~~G~~YFiCssg~~~HC~~ 102 (235)
+++.||.|+.++.+.. +++. . -.....+..+ +. ....|.+-.|+|++..+|+|||=|- ...+= +
T Consensus 79 r~~~Gd~v~v~v~N~l~~~tsiH-w---HGl~~~~~~DGvP~vt~~~I~PG~s~~Y~f~~~~~GTyWYHsH--~~~q~-~ 151 (587)
T TIGR01480 79 RWREGDTVRLRVTNTLPEDTSIH-W---HGILLPFQMDGVPGVSFAGIAPGETFTYRFPVRQSGTYWYHSH--SGFQE-Q 151 (587)
T ss_pred EEECCCEEEEEEEcCCCCCceEE-c---CCCcCCccccCCCcccccccCCCCeEEEEEECCCCeeEEEecC--chhHh-h
Confidence 7899999998886532 1221 0 0111111111 10 1233455568889999999999984 44555 7
Q ss_pred CCceeEEEEec
Q 042860 103 SSQKLSIKVSA 113 (235)
Q Consensus 103 ~GqKl~I~V~~ 113 (235)
.|+.-.|.|..
T Consensus 152 ~GL~G~lIV~~ 162 (587)
T TIGR01480 152 AGLYGPLIIDP 162 (587)
T ss_pred ccceEEEEECC
Confidence 79998888864
No 39
>MTH00129 COX2 cytochrome c oxidase subunit II; Provisional
Probab=49.62 E-value=23 Score=31.63 Aligned_cols=32 Identities=22% Similarity=0.441 Sum_probs=24.0
Q ss_pred ceEEEcCCceeEEEEEcCCCCCccccC---CceeEEEEec
Q 042860 77 SYTWHPSRPGFFYFTFNNGSLQTCNKS---SQKLSIKVSA 113 (235)
Q Consensus 77 ~~~v~L~~~G~~YFiCssg~~~HC~~~---GqKl~I~V~~ 113 (235)
...++.+++|.||..| ..-| .. .|++.|.|.+
T Consensus 181 ~~~~~~~~~G~~~g~C----~e~C-G~~H~~M~~~v~vv~ 215 (230)
T MTH00129 181 QTAFIASRPGVFYGQC----SEIC-GANHSFMPIVVEAVP 215 (230)
T ss_pred EEEEEeCCceEEEEEC----hhhc-cccccCCcEEEEEEC
Confidence 3466779999999999 4577 44 4888888765
No 40
>PLN02168 copper ion binding / pectinesterase
Probab=49.38 E-value=99 Score=31.13 Aligned_cols=73 Identities=12% Similarity=0.136 Sum_probs=46.5
Q ss_pred ceeeCCEEEEEecCC--------CCceEEecCccccc-----ccCCCCcccccCCCCcceEEEc-CCceeEEEEEcCCCC
Q 042860 32 SVHVGDTIIFKHKFN--------NSNLYIFKNKNAFN-----LCNFSQATLLTNPNSTSYTWHP-SRPGFFYFTFNNGSL 97 (235)
Q Consensus 32 tF~VGDtLvF~y~~~--------~HsVv~V~~~~~Y~-----~Cn~s~p~~~s~g~st~~~v~L-~~~G~~YFiCssg~~ 97 (235)
+++.||+|+.+..++ -|-+.+- .....| .|- ...|.+-+|+|++ +++|+|||=+. ..
T Consensus 60 ~~~~GD~v~V~v~N~L~~~ttiHWHGl~~~-~~~~~DGv~gtQcp------I~PG~sftY~F~~~~q~GT~WYHsH--~~ 130 (545)
T PLN02168 60 NATANDVINVNIFNNLTEPFLMTWNGLQLR-KNSWQDGVRGTNCP------ILPGTNWTYRFQVKDQIGSYFYFPS--LL 130 (545)
T ss_pred EEECCCEEEEEEEeCCCCCccEeeCCccCC-CCCCcCCCCCCcCC------CCCCCcEEEEEEeCCCCceEEEecC--hh
Confidence 789999999988652 2444432 111112 122 3345555688888 48999999874 33
Q ss_pred CccccCCceeEEEEecc
Q 042860 98 QTCNKSSQKLSIKVSAV 114 (235)
Q Consensus 98 ~HC~~~GqKl~I~V~~~ 114 (235)
.+= ..|+.-.|.|...
T Consensus 131 ~Q~-~~GL~G~lII~~~ 146 (545)
T PLN02168 131 LQK-AAGGYGAIRIYNP 146 (545)
T ss_pred hhh-hCcceeEEEEcCC
Confidence 444 5799999999764
No 41
>TIGR01433 CyoA cytochrome o ubiquinol oxidase subunit II. This enzyme catalyzes the oxidation of ubiquinol with the concomitant reduction of molecular oxygen to water. This acts as the terminal electron acceptor in the respiratory chain. Subunit II is responsible for binding and oxidation of the ubiquinone substrate. This sequence is closely related to QoxA, which oxidizes quinol in gram positive bacteria but which is in complex with subunits which utilize cytochromes a in the reduction of molecular oxygen. Slightly more distantly related is subunit II of cytochrome c oxidase which uses cyt. c as the oxidant.
Probab=49.17 E-value=26 Score=31.23 Aligned_cols=33 Identities=12% Similarity=0.094 Sum_probs=25.5
Q ss_pred cceEEEcCCceeEEEEEcCCCCCccccCC---ceeEEEEec
Q 042860 76 TSYTWHPSRPGFFYFTFNNGSLQTCNKSS---QKLSIKVSA 113 (235)
Q Consensus 76 t~~~v~L~~~G~~YFiCssg~~~HC~~~G---qKl~I~V~~ 113 (235)
+...++.+++|.|+-.| .+-| ..| |++.|.|.+
T Consensus 179 n~~~~~~~~~G~y~g~C----aE~C-G~~Ha~M~~~V~v~~ 214 (226)
T TIGR01433 179 TKLHLIANEPGVYDGIS----ANYS-GPGFSGMKFKAIATD 214 (226)
T ss_pred EEEEEEeCCCEEEEEEc----hhhc-CcCccCCeEEEEEEC
Confidence 34567789999999999 5678 554 888888765
No 42
>MTH00098 COX2 cytochrome c oxidase subunit II; Validated
Probab=48.91 E-value=25 Score=31.31 Aligned_cols=32 Identities=22% Similarity=0.483 Sum_probs=23.9
Q ss_pred ceEEEcCCceeEEEEEcCCCCCccccCC---ceeEEEEec
Q 042860 77 SYTWHPSRPGFFYFTFNNGSLQTCNKSS---QKLSIKVSA 113 (235)
Q Consensus 77 ~~~v~L~~~G~~YFiCssg~~~HC~~~G---qKl~I~V~~ 113 (235)
...++.+++|.||..| ..-| ..| |.+.|.|.+
T Consensus 181 ~~~~~~~~~G~~~g~C----se~C-G~~H~~M~~~v~v~~ 215 (227)
T MTH00098 181 QTTLMSTRPGLYYGQC----SEIC-GSNHSFMPIVLELVP 215 (227)
T ss_pred EEEEecCCcEEEEEEC----cccc-CcCcCCceEEEEEeC
Confidence 3466779999999999 4577 554 777777765
No 43
>MTH00139 COX2 cytochrome c oxidase subunit II; Provisional
Probab=48.17 E-value=25 Score=31.10 Aligned_cols=32 Identities=19% Similarity=0.448 Sum_probs=24.8
Q ss_pred ceEEEcCCceeEEEEEcCCCCCccccCC---ceeEEEEec
Q 042860 77 SYTWHPSRPGFFYFTFNNGSLQTCNKSS---QKLSIKVSA 113 (235)
Q Consensus 77 ~~~v~L~~~G~~YFiCssg~~~HC~~~G---qKl~I~V~~ 113 (235)
...++.+++|.||..| ..-| ..| |++.|.|.+
T Consensus 181 ~~~~~~~~~G~y~g~C----sE~C-G~~Hs~M~~~v~vv~ 215 (226)
T MTH00139 181 QVGFFINRPGVFYGQC----SEIC-GANHSFMPIVVEAIS 215 (226)
T ss_pred EEEEEcCCCEEEEEEC----hhhc-CcCcCCCeEEEEEeC
Confidence 3566779999999999 5678 554 788888765
No 44
>PRK10378 inactive ferrous ion transporter periplasmic protein EfeO; Provisional
Probab=47.15 E-value=78 Score=30.58 Aligned_cols=36 Identities=19% Similarity=0.149 Sum_probs=23.9
Q ss_pred ccCCCCcceEEEcCCceeEEEEEcCCCCCccccCCceeEEEEec
Q 042860 70 LTNPNSTSYTWHPSRPGFFYFTFNNGSLQTCNKSSQKLSIKVSA 113 (235)
Q Consensus 70 ~s~g~st~~~v~L~~~G~~YFiCssg~~~HC~~~GqKl~I~V~~ 113 (235)
+..|.+..+++.| ++|+|-|+|+ . |= .||-.|+|..
T Consensus 82 IaPG~s~~l~~~L-~pGtY~~~C~--~--~~---~~~g~l~Vtg 117 (375)
T PRK10378 82 IAPGFSQKMTANL-QPGEYDMTCG--L--LT---NPKGKLIVKG 117 (375)
T ss_pred cCCCCceEEEEec-CCceEEeecC--c--CC---CCCceEEEeC
Confidence 4445444566777 7999999993 3 43 2466788865
No 45
>MTH00117 COX2 cytochrome c oxidase subunit II; Provisional
Probab=46.70 E-value=28 Score=30.91 Aligned_cols=32 Identities=19% Similarity=0.468 Sum_probs=24.2
Q ss_pred ceEEEcCCceeEEEEEcCCCCCccccCC---ceeEEEEec
Q 042860 77 SYTWHPSRPGFFYFTFNNGSLQTCNKSS---QKLSIKVSA 113 (235)
Q Consensus 77 ~~~v~L~~~G~~YFiCssg~~~HC~~~G---qKl~I~V~~ 113 (235)
...++.+++|.||..| ..-| ..| |++.|.|.+
T Consensus 181 ~~~~~~~~~G~y~g~C----sE~C-G~~Hs~M~~~v~vv~ 215 (227)
T MTH00117 181 QTSFITTRPGVFYGQC----SEIC-GANHSFMPIVVESVP 215 (227)
T ss_pred EEEEEEcccceEEEEe----cccc-ccCccCCeEEEEEcC
Confidence 3456779999999999 4577 554 788887765
No 46
>TIGR01432 QOXA cytochrome aa3 quinol oxidase, subunit II. This enzyme catalyzes the oxidation of quinol with the concomitant reduction of molecular oxygen to water. This acts as the terminal electron acceptor in the respiratory chain. This subunit contains two transmembrane helices and a large external domain responsible for the binding and oxidation of quinol. QuoX is (presently) only found in gram positive bacteria of the Bacillus/Staphylococcus group. Like CyoA, the ubiquinol oxidase found in proteobacteria, the residues responsible for the ligation of Cu(a) and cytochrome c (found in the related cyt. c oxidases) are absent. Unlike CyoA, QoxA is in complex with a subunit I which contains cytochromes a similar to the cyt. c oxidases (as opposed to cytochromes b).
Probab=46.68 E-value=31 Score=30.22 Aligned_cols=33 Identities=6% Similarity=0.074 Sum_probs=25.8
Q ss_pred cceEEEcCCceeEEEEEcCCCCCccccCC---ceeEEEEec
Q 042860 76 TSYTWHPSRPGFFYFTFNNGSLQTCNKSS---QKLSIKVSA 113 (235)
Q Consensus 76 t~~~v~L~~~G~~YFiCssg~~~HC~~~G---qKl~I~V~~ 113 (235)
+...++.+++|.||-.| ..-| ..| |++.|.|.+
T Consensus 170 ~~~~~~~~~~G~y~g~C----ae~C-G~~Hs~M~~~v~v~~ 205 (217)
T TIGR01432 170 MNWYLQADQVGTYRGRN----ANFN-GEGFADQTFDVNAVS 205 (217)
T ss_pred EEEEEEeCCCEEEEEEe----hhhc-CccccCCeEEEEEeC
Confidence 34567789999999999 4678 554 898888876
No 47
>MTH00038 COX2 cytochrome c oxidase subunit II; Provisional
Probab=46.33 E-value=33 Score=30.57 Aligned_cols=32 Identities=25% Similarity=0.430 Sum_probs=24.8
Q ss_pred ceEEEcCCceeEEEEEcCCCCCccccCC---ceeEEEEec
Q 042860 77 SYTWHPSRPGFFYFTFNNGSLQTCNKSS---QKLSIKVSA 113 (235)
Q Consensus 77 ~~~v~L~~~G~~YFiCssg~~~HC~~~G---qKl~I~V~~ 113 (235)
...++.+++|.||..| ..-| ..| |++.|.|.+
T Consensus 181 ~~~~~~~~~G~~~g~C----se~C-G~~Hs~M~~~v~vv~ 215 (229)
T MTH00038 181 QTTFFISRTGLFYGQC----SEIC-GANHSFMPIVIESVP 215 (229)
T ss_pred EEEEEcCCCEEEEEEc----cccc-CcCcCCCeEEEEEeC
Confidence 3466779999999999 5678 555 888888765
No 48
>PLN00044 multi-copper oxidase-related protein; Provisional
Probab=44.80 E-value=63 Score=33.00 Aligned_cols=73 Identities=8% Similarity=0.106 Sum_probs=47.6
Q ss_pred ceeeCCEEEEEecCC--------CCceEEecCcc-----cccccCCCCcccccCCCCcceEEEc-CCceeEEEEEcCCCC
Q 042860 32 SVHVGDTIIFKHKFN--------NSNLYIFKNKN-----AFNLCNFSQATLLTNPNSTSYTWHP-SRPGFFYFTFNNGSL 97 (235)
Q Consensus 32 tF~VGDtLvF~y~~~--------~HsVv~V~~~~-----~Y~~Cn~s~p~~~s~g~st~~~v~L-~~~G~~YFiCssg~~ 97 (235)
+++.||+|+.+..+. -|-+.|. ... .+..|- ...|.+-+|+|++ ++.|+|||=+. ..
T Consensus 63 ~~~~GD~v~V~V~N~L~~~ttIHWHGl~q~-~t~w~DGv~~TQcP------I~PG~sftY~F~~~dq~GT~WYHsH--~~ 133 (596)
T PLN00044 63 NVTTNWNLVVNVRNALDEPLLLTWHGVQQR-KSAWQDGVGGTNCA------IPAGWNWTYQFQVKDQVGSFFYAPS--TA 133 (596)
T ss_pred EEECCCEEEEEEEeCCCCCccEEECCccCC-CCccccCCCCCcCC------cCCCCcEEEEEEeCCCCceeEeecc--ch
Confidence 789999999886542 2444442 111 122343 2344455688888 58999999874 55
Q ss_pred CccccCCceeEEEEecc
Q 042860 98 QTCNKSSQKLSIKVSAV 114 (235)
Q Consensus 98 ~HC~~~GqKl~I~V~~~ 114 (235)
.+- ..|+.-.|.|...
T Consensus 134 ~Q~-~~Gl~GalII~~~ 149 (596)
T PLN00044 134 LHR-AAGGYGAITINNR 149 (596)
T ss_pred hhh-hCcCeeEEEEcCc
Confidence 555 6899999999763
No 49
>MTH00023 COX2 cytochrome c oxidase subunit II; Validated
Probab=43.21 E-value=37 Score=30.45 Aligned_cols=31 Identities=23% Similarity=0.461 Sum_probs=24.4
Q ss_pred eEEEcCCceeEEEEEcCCCCCccccCC---ceeEEEEec
Q 042860 78 YTWHPSRPGFFYFTFNNGSLQTCNKSS---QKLSIKVSA 113 (235)
Q Consensus 78 ~~v~L~~~G~~YFiCssg~~~HC~~~G---qKl~I~V~~ 113 (235)
..++.+++|.||..| ...| ..| |++.|+|.+
T Consensus 193 ~~~~~~~~G~y~g~C----~e~C-G~~Hs~M~~~v~vv~ 226 (240)
T MTH00023 193 TGFFIKRPGVFYGQC----SEIC-GANHSFMPIVIEAVS 226 (240)
T ss_pred EEEEcCCCEEEEEEc----hhhc-CcCccCCeEEEEEEC
Confidence 456779999999999 5688 655 788887765
No 50
>TIGR03389 laccase laccase, plant. Members of this protein family include the copper-containing enzyme laccase (EC 1.10.3.2), often several from a single plant species, and additional, uncharacterized, closely related plant proteins termed laccase-like multicopper oxidases. This protein family shows considerable sequence similarity to the L-ascorbate oxidase (EC 1.10.3.3) family. Laccases are enzymes of rather broad specificity, and classification of all proteins scoring about the trusted cutoff of this model as laccases may be appropriate.
Probab=41.47 E-value=99 Score=30.75 Aligned_cols=72 Identities=14% Similarity=0.176 Sum_probs=45.2
Q ss_pred ceeeCCEEEEEecCC--------CCceEEecCccccc------ccCCCCcccccCCCCcceEEEc-CCceeEEEEEcCCC
Q 042860 32 SVHVGDTIIFKHKFN--------NSNLYIFKNKNAFN------LCNFSQATLLTNPNSTSYTWHP-SRPGFFYFTFNNGS 96 (235)
Q Consensus 32 tF~VGDtLvF~y~~~--------~HsVv~V~~~~~Y~------~Cn~s~p~~~s~g~st~~~v~L-~~~G~~YFiCssg~ 96 (235)
+++.||+|+.+..+. .|-+.+. ....+| .|- ...|.+-+|+|++ +.+|+|||=|- .
T Consensus 37 ~~~~GD~v~v~v~N~l~~~tsiHwHGl~q~-~~~~~DGv~~vTq~p------I~PG~s~~Y~f~~~~~~GT~WYHsH--~ 107 (539)
T TIGR03389 37 YAREGDTVIVNVTNNVQYNVTIHWHGVRQL-RNGWADGPAYITQCP------IQPGQSYVYNFTITGQRGTLWWHAH--I 107 (539)
T ss_pred EEEcCCEEEEEEEeCCCCCeeEecCCCCCC-CCCCCCCCcccccCC------cCCCCeEEEEEEecCCCeeEEEecC--c
Confidence 789999999887652 2333321 100011 111 2344555688887 48999999984 3
Q ss_pred CCccccCCceeEEEEecc
Q 042860 97 LQTCNKSSQKLSIKVSAV 114 (235)
Q Consensus 97 ~~HC~~~GqKl~I~V~~~ 114 (235)
.+. ..|+.-.|.|...
T Consensus 108 -~~~-~~Gl~G~lIV~~~ 123 (539)
T TIGR03389 108 -SWL-RATVYGAIVILPK 123 (539)
T ss_pred -hhh-hccceEEEEEcCC
Confidence 345 6799999999864
No 51
>PLN02354 copper ion binding / oxidoreductase
Probab=40.16 E-value=1.1e+02 Score=30.84 Aligned_cols=73 Identities=11% Similarity=0.171 Sum_probs=47.3
Q ss_pred ceeeCCEEEEEecCC--------CCceEEecCccccc-----ccCCCCcccccCCCCcceEEEc-CCceeEEEEEcCCCC
Q 042860 32 SVHVGDTIIFKHKFN--------NSNLYIFKNKNAFN-----LCNFSQATLLTNPNSTSYTWHP-SRPGFFYFTFNNGSL 97 (235)
Q Consensus 32 tF~VGDtLvF~y~~~--------~HsVv~V~~~~~Y~-----~Cn~s~p~~~s~g~st~~~v~L-~~~G~~YFiCssg~~ 97 (235)
+++.||+|+.+..++ -|-+.|- ....+| .|- ...|.+-+|+|++ ++.|+|||=+. ..
T Consensus 61 ~~~~GD~v~V~v~N~l~~~ttiHWHGi~q~-~~~~~DGv~~TQcp------I~PG~sf~Y~F~~~~q~GT~WYHsH--~~ 131 (552)
T PLN02354 61 NSTSNNNIVINVFNNLDEPFLLTWSGIQQR-KNSWQDGVPGTNCP------IPPGTNFTYHFQPKDQIGSYFYYPS--TG 131 (552)
T ss_pred EEeCCCEEEEEEEECCCCCcccccccccCC-CCcccCCCcCCcCC------CCCCCcEEEEEEeCCCCcceEEecC--cc
Confidence 689999999876542 2444442 111122 232 2334455678887 57999999974 55
Q ss_pred CccccCCceeEEEEecc
Q 042860 98 QTCNKSSQKLSIKVSAV 114 (235)
Q Consensus 98 ~HC~~~GqKl~I~V~~~ 114 (235)
.+- ..|+.-.|.|...
T Consensus 132 ~Q~-~~Gl~G~lII~~~ 147 (552)
T PLN02354 132 MHR-AAGGFGGLRVNSR 147 (552)
T ss_pred cee-cCCccceEEEcCC
Confidence 566 6899999999764
No 52
>MTH00008 COX2 cytochrome c oxidase subunit II; Validated
Probab=39.68 E-value=41 Score=29.96 Aligned_cols=32 Identities=19% Similarity=0.447 Sum_probs=24.0
Q ss_pred ceEEEcCCceeEEEEEcCCCCCccccCC---ceeEEEEec
Q 042860 77 SYTWHPSRPGFFYFTFNNGSLQTCNKSS---QKLSIKVSA 113 (235)
Q Consensus 77 ~~~v~L~~~G~~YFiCssg~~~HC~~~G---qKl~I~V~~ 113 (235)
...++.+++|.||..| ..-| ..| |++.|.|.+
T Consensus 181 ~~~~~~~~~G~~~g~C----se~C-G~~Hs~M~~~v~vv~ 215 (228)
T MTH00008 181 QIGFTITRPGVFYGQC----SEIC-GANHSFMPIVLEAVD 215 (228)
T ss_pred EEEEEeCCCEEEEEEC----hhhc-CcCccCceeEEEEEC
Confidence 3456779999999999 4577 544 788887765
No 53
>MTH00051 COX2 cytochrome c oxidase subunit II; Provisional
Probab=38.71 E-value=40 Score=30.14 Aligned_cols=31 Identities=23% Similarity=0.453 Sum_probs=23.7
Q ss_pred eEEEcCCceeEEEEEcCCCCCccccCC---ceeEEEEec
Q 042860 78 YTWHPSRPGFFYFTFNNGSLQTCNKSS---QKLSIKVSA 113 (235)
Q Consensus 78 ~~v~L~~~G~~YFiCssg~~~HC~~~G---qKl~I~V~~ 113 (235)
..++.+++|.||..| ..-| ..| |++.|.|.+
T Consensus 186 ~~~~~~~~G~y~g~C----se~C-G~~Hs~M~i~v~vv~ 219 (234)
T MTH00051 186 TSFFIKRPGVFYGQC----SEIC-GANHSFMPIVIEGVS 219 (234)
T ss_pred EEEEeCCCEEEEEEC----hhhc-CcccccCeeEEEEEC
Confidence 456779999999999 4577 554 788887765
No 54
>MTH00076 COX2 cytochrome c oxidase subunit II; Provisional
Probab=38.40 E-value=43 Score=29.79 Aligned_cols=32 Identities=19% Similarity=0.456 Sum_probs=23.8
Q ss_pred ceEEEcCCceeEEEEEcCCCCCccccC---CceeEEEEec
Q 042860 77 SYTWHPSRPGFFYFTFNNGSLQTCNKS---SQKLSIKVSA 113 (235)
Q Consensus 77 ~~~v~L~~~G~~YFiCssg~~~HC~~~---GqKl~I~V~~ 113 (235)
...+..+++|.||..| ..-| .. .|++.|.|.+
T Consensus 181 ~~~~~~~~~G~~~g~C----~e~C-G~~Hs~M~~~v~vv~ 215 (228)
T MTH00076 181 QTSFIASRPGVYYGQC----SEIC-GANHSFMPIVVEATP 215 (228)
T ss_pred eEEEEeCCcEEEEEEC----hhhc-CccccCCceEEEEeC
Confidence 3456779999999999 4567 44 4888888765
No 55
>PLN02835 oxidoreductase
Probab=36.19 E-value=1.6e+02 Score=29.59 Aligned_cols=72 Identities=15% Similarity=0.165 Sum_probs=46.4
Q ss_pred ceeeCCEEEEEecCC--------CCceEEecCccccc-----ccCCCCcccccCCCCcceEEEc-CCceeEEEEEcCCCC
Q 042860 32 SVHVGDTIIFKHKFN--------NSNLYIFKNKNAFN-----LCNFSQATLLTNPNSTSYTWHP-SRPGFFYFTFNNGSL 97 (235)
Q Consensus 32 tF~VGDtLvF~y~~~--------~HsVv~V~~~~~Y~-----~Cn~s~p~~~s~g~st~~~v~L-~~~G~~YFiCssg~~ 97 (235)
+++.||+|+.+..++ -|-+.+. .....| .|- ...|.+-+|+|++ +++|+|||=|. ..
T Consensus 63 ~~~~GD~v~v~v~N~L~~~ttiHWHGl~~~-~~~~~DGv~~tQ~p------I~PG~sf~Y~F~~~~q~GT~WYHsH--~~ 133 (539)
T PLN02835 63 DVVTNDNIILNLINKLDQPFLLTWNGIKQR-KNSWQDGVLGTNCP------IPPNSNYTYKFQTKDQIGTFTYFPS--TL 133 (539)
T ss_pred EEECCCEEEEEEEeCCCCCCcEEeCCcccC-CCCCCCCCccCcCC------CCCCCcEEEEEEECCCCEeEEEEeC--cc
Confidence 789999999887642 2444432 111122 222 2334454678876 57999999984 45
Q ss_pred CccccCCceeEEEEec
Q 042860 98 QTCNKSSQKLSIKVSA 113 (235)
Q Consensus 98 ~HC~~~GqKl~I~V~~ 113 (235)
.+- ..|+.-.|.|..
T Consensus 134 ~q~-~~Gl~G~lIV~~ 148 (539)
T PLN02835 134 FHK-AAGGFGAINVYE 148 (539)
T ss_pred chh-cCcccceeEEeC
Confidence 566 789999999964
No 56
>MTH00027 COX2 cytochrome c oxidase subunit II; Provisional
Probab=35.47 E-value=58 Score=29.79 Aligned_cols=32 Identities=19% Similarity=0.419 Sum_probs=24.5
Q ss_pred ceEEEcCCceeEEEEEcCCCCCccccCC---ceeEEEEec
Q 042860 77 SYTWHPSRPGFFYFTFNNGSLQTCNKSS---QKLSIKVSA 113 (235)
Q Consensus 77 ~~~v~L~~~G~~YFiCssg~~~HC~~~G---qKl~I~V~~ 113 (235)
.+.++.+++|.||-.| ...| ..| |++.|.|..
T Consensus 215 ~~~~~~~~~G~y~g~C----sE~C-G~~Hs~Mpi~v~vv~ 249 (262)
T MTH00027 215 ETGFLIKRPGIFYGQC----SEIC-GANHSFMPIVVESVS 249 (262)
T ss_pred eEEEEcCCcEEEEEEc----chhc-CcCcCCCeEEEEEEC
Confidence 3466779999999999 5677 554 888888765
No 57
>PTZ00414 10 kDa heat shock protein; Provisional
Probab=35.30 E-value=71 Score=25.27 Aligned_cols=44 Identities=25% Similarity=0.333 Sum_probs=26.5
Q ss_pred ceEEEecCCCCCCCCceeeCCEEEEEecCCCCceEEecCcccccccC
Q 042860 17 SATIFVDGISEWKNPSVHVGDTIIFKHKFNNSNLYIFKNKNAFNLCN 63 (235)
Q Consensus 17 A~~~~VGg~~GW~~ptF~VGDtLvF~y~~~~HsVv~V~~~~~Y~~Cn 63 (235)
++.+-||...-+....+++||+++|.=..+ -.| .+ +.++|--.+
T Consensus 47 g~VvAVG~G~~~~~~~Vk~GD~Vl~~~y~G-tev-k~-dg~ey~i~~ 90 (100)
T PTZ00414 47 GTVVAVAAATKDWTPTVKVGDTVLLPEFGG-SSV-KV-EGEEFFLYN 90 (100)
T ss_pred eEEEEECCCCccccceecCCCEEEEcCCCC-cEE-EE-CCEEEEEEE
Confidence 556668865444345799999999873333 233 33 555565444
No 58
>PLN02991 oxidoreductase
Probab=34.21 E-value=2e+02 Score=28.96 Aligned_cols=73 Identities=14% Similarity=0.143 Sum_probs=45.2
Q ss_pred ceeeCCEEEEEecCC--------CCceEEecCccccc-----ccCCCCcccccCCCCcceEEEc-CCceeEEEEEcCCCC
Q 042860 32 SVHVGDTIIFKHKFN--------NSNLYIFKNKNAFN-----LCNFSQATLLTNPNSTSYTWHP-SRPGFFYFTFNNGSL 97 (235)
Q Consensus 32 tF~VGDtLvF~y~~~--------~HsVv~V~~~~~Y~-----~Cn~s~p~~~s~g~st~~~v~L-~~~G~~YFiCssg~~ 97 (235)
+++.||+|+.+..++ -|-+.+. .....| .|- ...|.+-.|+|++ +++|+|||=+- ..
T Consensus 62 ~~~~GD~v~V~V~N~L~~~ttiHWHGi~q~-~~~~~DGv~~tQcp------I~PG~sftY~F~~~~q~GT~WYHsH--~~ 132 (543)
T PLN02991 62 ISVTNDNLIINVFNHLDEPFLISWSGIRNW-RNSYQDGVYGTTCP------IPPGKNYTYALQVKDQIGSFYYFPS--LG 132 (543)
T ss_pred EEECCCEEEEEecCCCCCCccEEECCcccC-CCccccCCCCCCCc------cCCCCcEEEEEEeCCCCcceEEecC--cc
Confidence 789999999887653 2444432 111112 132 2334445688888 58999999874 33
Q ss_pred CccccCCceeEEEEecc
Q 042860 98 QTCNKSSQKLSIKVSAV 114 (235)
Q Consensus 98 ~HC~~~GqKl~I~V~~~ 114 (235)
.+- ..|..-.|.|...
T Consensus 133 ~q~-~~Gl~G~lIV~~~ 148 (543)
T PLN02991 133 FHK-AAGGFGAIRISSR 148 (543)
T ss_pred hhh-hCCCeeeEEEeCC
Confidence 344 4688888888764
No 59
>PRK09723 putative fimbrial-like adhesin protein; Provisional
Probab=33.76 E-value=3e+02 Score=27.21 Aligned_cols=36 Identities=19% Similarity=0.407 Sum_probs=21.7
Q ss_pred cceEEEecCCC-------CCCCCceeeCCEE-EEEecCCCCceEE
Q 042860 16 QSATIFVDGIS-------EWKNPSVHVGDTI-IFKHKFNNSNLYI 52 (235)
Q Consensus 16 ~A~~~~VGg~~-------GW~~ptF~VGDtL-vF~y~~~~HsVv~ 52 (235)
....|+||+.. +|.. +=-.||.. .|+|.....|++.
T Consensus 26 ~~~~~~vg~~~~~~~~~~~~~~-~g~~~d~~~~f~~~~~~~~~~~ 69 (421)
T PRK09723 26 DNVSYIVGNYYGVGPSDQKWNE-TGPSGDATVTFRYATSTNNLVF 69 (421)
T ss_pred CceEEEEccccccCCccccccc-cCCCcceEEEeccccCCcceEE
Confidence 36789999743 3543 23356654 4777765566665
No 60
>PF07731 Cu-oxidase_2: Multicopper oxidase; InterPro: IPR011706 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 2 domains.; GO: 0005507 copper ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GDC_C 3ZX1_A 2YAH_A 2YAR_A 2YAQ_A 2YAO_A 2YAM_A 2YAF_A 2YAP_A 2XU9_A ....
Probab=33.13 E-value=35 Score=26.69 Aligned_cols=40 Identities=13% Similarity=0.172 Sum_probs=30.9
Q ss_pred cCCCCcceEEEcCCceeEEEEEcCCCCCccccCCceeEEEEec
Q 042860 71 TNPNSTSYTWHPSRPGFFYFTFNNGSLQTCNKSSQKLSIKVSA 113 (235)
Q Consensus 71 s~g~st~~~v~L~~~G~~YFiCssg~~~HC~~~GqKl~I~V~~ 113 (235)
..++...+.++.+.+|.+.|=|- ...|= .+||...|.|..
T Consensus 97 ~~~~~~~i~~~~~~~G~w~~HCH--i~~H~-~~GM~~~~~v~~ 136 (138)
T PF07731_consen 97 PPGGWVVIRFRADNPGPWLFHCH--ILEHE-DNGMMAVFVVGP 136 (138)
T ss_dssp ETTEEEEEEEEETSTEEEEEEES--SHHHH-HTT-EEEEEECH
T ss_pred cceeEEEEEEEeecceEEEEEEc--hHHHH-hCCCeEEEEEcC
Confidence 33444456777899999999995 78898 999999999875
No 61
>PLN02792 oxidoreductase
Probab=32.99 E-value=1.5e+02 Score=29.80 Aligned_cols=80 Identities=11% Similarity=0.240 Sum_probs=0.0
Q ss_pred ceeeCCEEEEEecC--------CCCceEEecC--ccc--ccccCCCCcccccCCCCcceEEEc-CCceeEEEEEcCCCCC
Q 042860 32 SVHVGDTIIFKHKF--------NNSNLYIFKN--KNA--FNLCNFSQATLLTNPNSTSYTWHP-SRPGFFYFTFNNGSLQ 98 (235)
Q Consensus 32 tF~VGDtLvF~y~~--------~~HsVv~V~~--~~~--Y~~Cn~s~p~~~s~g~st~~~v~L-~~~G~~YFiCssg~~~ 98 (235)
+++.||+|+.+..+ .-|-+.+-.+ .++ +..|- ...|.+-.|+|++ ++.|+|||=+. ...
T Consensus 50 ~~~~GD~v~V~v~N~L~~~ttiHWHGl~q~~~~~~DGv~~tqcP------I~PG~sftY~F~~~~q~GT~WYHsH--~~~ 121 (536)
T PLN02792 50 RSLTNDNLVINVHNDLDEPFLLSWNGVHMRKNSYQDGVYGTTCP------IPPGKNYTYDFQVKDQVGSYFYFPS--LAV 121 (536)
T ss_pred EEECCCEEEEEEEeCCCCCcCEeCCCcccCCCCccCCCCCCcCc------cCCCCcEEEEEEeCCCccceEEecC--cch
Q ss_pred ccccCCceeEEEEeccCCCCCC
Q 042860 99 TCNKSSQKLSIKVSAVSSTPSP 120 (235)
Q Consensus 99 HC~~~GqKl~I~V~~~~~~psp 120 (235)
+- ..|+.-.+.|......+.+
T Consensus 122 q~-~~Gl~G~liI~~~~~~~~p 142 (536)
T PLN02792 122 QK-AAGGYGSLRIYSLPRIPVP 142 (536)
T ss_pred hh-hcccccceEEeCCcccCcC
No 62
>MTH00185 COX2 cytochrome c oxidase subunit II; Provisional
Probab=32.86 E-value=63 Score=28.82 Aligned_cols=32 Identities=22% Similarity=0.465 Sum_probs=23.6
Q ss_pred ceEEEcCCceeEEEEEcCCCCCccccCC---ceeEEEEec
Q 042860 77 SYTWHPSRPGFFYFTFNNGSLQTCNKSS---QKLSIKVSA 113 (235)
Q Consensus 77 ~~~v~L~~~G~~YFiCssg~~~HC~~~G---qKl~I~V~~ 113 (235)
...+..+++|.||..| ..-| ..| |++.|.|..
T Consensus 181 ~~~~~~~~~G~~~g~C----se~C-G~~Hs~M~~~v~vv~ 215 (230)
T MTH00185 181 QATFIISRPGLYYGQC----SEIC-GANHSFMPIVVEAVP 215 (230)
T ss_pred EEEEEeCCcEEEEEEc----hhhc-CcCcCCCeEEEEEEC
Confidence 3456679999999999 5677 554 777777664
No 63
>PRK14533 groES co-chaperonin GroES; Provisional
Probab=32.39 E-value=55 Score=25.31 Aligned_cols=46 Identities=13% Similarity=0.309 Sum_probs=26.2
Q ss_pred cceEEEecCCCCCCCCceeeCCEEEEEecCCCCceEEecCcccccccCC
Q 042860 16 QSATIFVDGISEWKNPSVHVGDTIIFKHKFNNSNLYIFKNKNAFNLCNF 64 (235)
Q Consensus 16 ~A~~~~VGg~~GW~~ptF~VGDtLvF~y~~~~HsVv~V~~~~~Y~~Cn~ 64 (235)
.++.+-||....+....+++||.++|.=..+ +=+.+ +.++|--|+.
T Consensus 37 ~G~VvavG~g~~~~~~~Vk~GD~Vl~~~y~g--~ev~~-~~~~y~iv~e 82 (91)
T PRK14533 37 KAEVVAVGKLDDEEDFDIKVGDKVIFSKYAG--TEIKI-DDEDYIIIDV 82 (91)
T ss_pred eEEEEEECCCCccccccccCCCEEEEccCCC--eEEEE-CCEEEEEEEh
Confidence 3556668854333345799999999873333 22333 4445554443
No 64
>PRK10525 cytochrome o ubiquinol oxidase subunit II; Provisional
Probab=31.22 E-value=62 Score=30.51 Aligned_cols=32 Identities=13% Similarity=0.068 Sum_probs=25.0
Q ss_pred cceEEEcCCceeEEEEEcCCCCCccccC---CceeEEEEe
Q 042860 76 TSYTWHPSRPGFFYFTFNNGSLQTCNKS---SQKLSIKVS 112 (235)
Q Consensus 76 t~~~v~L~~~G~~YFiCssg~~~HC~~~---GqKl~I~V~ 112 (235)
+...++.+++|.|+-.| .+.| .. .|++.|.|.
T Consensus 191 n~l~~~a~~~G~Y~G~C----aEyC-G~gHs~M~f~v~v~ 225 (315)
T PRK10525 191 TRLHLIANEPGTYDGIS----ASYS-GPGFSGMKFKAIAT 225 (315)
T ss_pred eEEEEEcCCCEEEEEEC----hhhc-CccccCCeEEEEEE
Confidence 44567789999999999 5677 54 489988876
No 65
>KOG1546 consensus Metacaspase involved in regulation of apoptosis [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=30.06 E-value=24 Score=33.75 Aligned_cols=15 Identities=27% Similarity=0.450 Sum_probs=13.1
Q ss_pred CceeeCCEEEEEecC
Q 042860 31 PSVHVGDTIIFKHKF 45 (235)
Q Consensus 31 ptF~VGDtLvF~y~~ 45 (235)
...+.||+|+|.|+.
T Consensus 133 ~~aq~gD~LvfHYSG 147 (362)
T KOG1546|consen 133 ESAQPGDSLVFHYSG 147 (362)
T ss_pred hcCCCCCEEEEEecC
Confidence 368999999999985
No 66
>MTH00080 COX2 cytochrome c oxidase subunit II; Provisional
Probab=29.49 E-value=88 Score=28.05 Aligned_cols=32 Identities=19% Similarity=0.465 Sum_probs=24.6
Q ss_pred ceEEEcCCceeEEEEEcCCCCCccccCC---ceeEEEEec
Q 042860 77 SYTWHPSRPGFFYFTFNNGSLQTCNKSS---QKLSIKVSA 113 (235)
Q Consensus 77 ~~~v~L~~~G~~YFiCssg~~~HC~~~G---qKl~I~V~~ 113 (235)
...++.+++|.||-.| ..-| ..| |++.|.|.+
T Consensus 184 ~~~~~~~~~G~y~g~C----sE~C-G~~Hs~M~~~v~vv~ 218 (231)
T MTH00080 184 TLCYSFPMPGVFYGQC----SEIC-GANHSFMPIAVEVTL 218 (231)
T ss_pred EEEEEEcCceEEEEEe----hhhc-CcCccCCEEEEEEEC
Confidence 3466779999999999 5677 554 888888765
No 67
>PF11766 Candida_ALS_N: Cell-wall agglutinin N-terminal ligand-sugar binding ; InterPro: IPR024672 This N-terminal domain is likely to be the sugar or ligand binding domain of yeast alpha-agglutinin [] and agglutinin-like (ALS) proteins.; PDB: 2YLH_A 2Y7M_A 2Y7L_A 2Y7O_A 2Y7N_A.
Probab=28.82 E-value=24 Score=32.22 Aligned_cols=41 Identities=22% Similarity=0.539 Sum_probs=27.6
Q ss_pred CCCCC--ceeeCCEE------EEEecCCCCceEEecCcccccccCCCCc
Q 042860 27 EWKNP--SVHVGDTI------IFKHKFNNSNLYIFKNKNAFNLCNFSQA 67 (235)
Q Consensus 27 GW~~p--tF~VGDtL------vF~y~~~~HsVv~V~~~~~Y~~Cn~s~p 67 (235)
+|++. .++.||+- ||||...+.+|.+..+...|..|++...
T Consensus 1 ~W~Idgs~v~~GDtFtL~MPcVfKf~t~~~sv~L~~~~~~yAtC~~~~G 49 (249)
T PF11766_consen 1 SWSIDGSNVSPGDTFTLTMPCVFKFTTSQTSVDLTAGGTTYATCTFQSG 49 (249)
T ss_dssp EEEEETTT--TT-EEEEEEETEEEESSS-SEEEEEETTEEEEEEEEE--
T ss_pred CccccccccCCCCEEEEecceEEEEecCCCEEEEEeCCEEEEEecccCc
Confidence 36542 68889987 7888877778888778889999998654
No 68
>KOG1263 consensus Multicopper oxidases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=28.65 E-value=3.7e+02 Score=27.41 Aligned_cols=105 Identities=16% Similarity=0.271 Sum_probs=0.0
Q ss_pred ChhHHHHHHHhhhcccceEEEecCCCCCCCC-------------------------ceeeCCEEEEEecC--------CC
Q 042860 1 MLPIFLVLFLLSQQAQSATIFVDGISEWKNP-------------------------SVHVGDTIIFKHKF--------NN 47 (235)
Q Consensus 1 ~~~~~~ll~ll~~~a~A~~~~VGg~~GW~~p-------------------------tF~VGDtLvF~y~~--------~~ 47 (235)
.+.+++++.++...+.++...=- |+.. +...||+|+-+..+ .-
T Consensus 10 ~~~~~~~~~~~~~~a~~~~~~~~----~~v~~~~~s~l~~~~~vi~iNG~fPGP~I~~~~gD~ivV~v~N~~~~~~sihW 85 (563)
T KOG1263|consen 10 LFLCGSLLLVFFSQAEAPIRFHT----WKVTYGTASPLCVEKQVITINGQFPGPTINAEEGDTIVVNVVNRLDEPFSIHW 85 (563)
T ss_pred HHHHHHHHHHHHhhhcCceEEEE----eeEEeeeeccCCccceeEeecCCCCCCeEEEEeCCEEEEEEEeCCCCceEEEe
Q ss_pred CceEEecCcccc------cccCCCCcccccCCCCcceEEEcC-CceeEEEEEcCCCCCccccCCceeEEEEeccCCCCCC
Q 042860 48 SNLYIFKNKNAF------NLCNFSQATLLTNPNSTSYTWHPS-RPGFFYFTFNNGSLQTCNKSSQKLSIKVSAVSSTPSP 120 (235)
Q Consensus 48 HsVv~V~~~~~Y------~~Cn~s~p~~~s~g~st~~~v~L~-~~G~~YFiCssg~~~HC~~~GqKl~I~V~~~~~~psp 120 (235)
|-|.| .+..| ..|- ...|.+-.|.|+++ +.|++|+-.. ..-|= ..|+.-++.|......+-|
T Consensus 86 hGv~q--~kn~w~DG~~~TqCP------I~Pg~~~tY~F~v~~q~GT~~yh~h--~~~~R-a~G~~G~liI~~~~~~p~p 154 (563)
T KOG1263|consen 86 HGVRQ--RKNPWQDGVYITQCP------IQPGENFTYRFTVKDQIGTLWYHSH--VSWQR-ATGVFGALIINPRPGLPVP 154 (563)
T ss_pred ccccc--cCCccccCCccccCC------cCCCCeEEEEEEeCCcceeEEEeec--ccccc-ccCceeEEEEcCCccCCCC
No 69
>PF10670 DUF4198: Domain of unknown function (DUF4198)
Probab=28.12 E-value=2.4e+02 Score=23.39 Aligned_cols=17 Identities=24% Similarity=0.460 Sum_probs=12.6
Q ss_pred cceEEEcCCceeEEEEE
Q 042860 76 TSYTWHPSRPGFFYFTF 92 (235)
Q Consensus 76 t~~~v~L~~~G~~YFiC 92 (235)
..++|++.++|.+.+..
T Consensus 193 G~~~~~~~~~G~wli~a 209 (215)
T PF10670_consen 193 GRATFTLPRPGLWLIRA 209 (215)
T ss_pred CEEEEecCCCEEEEEEE
Confidence 45788999999776553
No 70
>PF12961 DUF3850: Domain of Unknown Function with PDB structure (DUF3850)
Probab=28.12 E-value=36 Score=25.52 Aligned_cols=12 Identities=25% Similarity=0.711 Sum_probs=10.3
Q ss_pred CceeeCCEEEEE
Q 042860 31 PSVHVGDTIIFK 42 (235)
Q Consensus 31 ptF~VGDtLvF~ 42 (235)
..|+|||.|+++
T Consensus 27 Rdf~VGD~L~L~ 38 (72)
T PF12961_consen 27 RDFQVGDILVLR 38 (72)
T ss_pred CCCCCCCEEEEE
Confidence 479999999875
No 71
>PF04092 SAG: SRS domain; InterPro: IPR007226 Toxoplasma gondii is a persistent protozoan parasite capable of infecting almost any warm-blooded vertebrate. The surface of T. gondii is coated with a family of developmentally regulated glycosylphosphatidylinositol (GPI)-linked proteins (SRSs), of which SAG1 is the prototypic member. SRS proteins mediate attachment to host cells and interface with the host immune response to regulate the virulence of the parasite. The structure of the immunodominant SAG1 antigen reveals a homodimeric configuration []. This family of surface antigens is found in other apicomplexans.; GO: 0016020 membrane; PDB: 1YNT_F 1KZQ_B 2X28_A 2WNK_A 2JKS_A.
Probab=27.72 E-value=1.2e+02 Score=23.56 Aligned_cols=24 Identities=25% Similarity=0.502 Sum_probs=16.2
Q ss_pred CCceeEEEEEcCCCCC-------ccccCCceeEEEE
Q 042860 83 SRPGFFYFTFNNGSLQ-------TCNKSSQKLSIKV 111 (235)
Q Consensus 83 ~~~G~~YFiCssg~~~-------HC~~~GqKl~I~V 111 (235)
.+...+||.|...... +| ||.|+|
T Consensus 94 ~~~~~~~~~C~~~~~~~~~~~~~~C-----~V~V~V 124 (124)
T PF04092_consen 94 STDKTFCYGCKKSSSSESAATGTSC-----KVTVTV 124 (124)
T ss_dssp SS-EEEEEEEEETTCC-----CEEE-----EEEEEE
T ss_pred CCCEEEEEEecCCCCCccccCCCcc-----EEEEEC
Confidence 3567799999744333 57 888876
No 72
>PF00394 Cu-oxidase: Multicopper oxidase; InterPro: IPR001117 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 1 (blue) domains. These domains are also present in proteins that have lost the ability to bind copper.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1RZP_A 2AVF_D 1NIA_A 1KCB_A 2NRD_A 1NIB_A 2BW4_A 1RZQ_C 2BWD_A 2BWI_A ....
Probab=26.74 E-value=1.2e+02 Score=24.71 Aligned_cols=43 Identities=14% Similarity=0.216 Sum_probs=26.9
Q ss_pred ccCCCCcceEEEcCC-ceeEEEEEc--CCCCCccccCCceeEEEEec
Q 042860 70 LTNPNSTSYTWHPSR-PGFFYFTFN--NGSLQTCNKSSQKLSIKVSA 113 (235)
Q Consensus 70 ~s~g~st~~~v~L~~-~G~~YFiCs--sg~~~HC~~~GqKl~I~V~~ 113 (235)
+..|..-.+.|+.++ +|.||+.+. .....+. +.++.++|.+-.
T Consensus 112 l~~G~R~dvlv~~~~~~g~y~i~~~~~~~~~~~~-~~~~~~aiL~Y~ 157 (159)
T PF00394_consen 112 LAPGQRYDVLVTADQPPGNYWIRASYQHDSINDP-QNGNALAILRYD 157 (159)
T ss_dssp E-TTEEEEEEEEECSCSSEEEEEEEESSSSSHSH-GGGTTEEEEEET
T ss_pred eeCCeEEEEEEEeCCCCCeEEEEEecccCCCccC-CCcEEEEEEEEC
Confidence 455543345677787 888998872 0234455 678888887654
No 73
>PF10377 ATG11: Autophagy-related protein 11; InterPro: IPR019460 This family consists of proteins involved in telomere maintenance. In Schizosaccharomyces pombe (fission yeast) this protein is called Taf1 (taz1 interacting factor) and is part of the telomere cap complex. In Saccharomyces cerevisiae (baker's yeast) this protein is called ATG11 and is known to be involved in vacuolar targeting and peroxisome degradation [, ].
Probab=26.67 E-value=49 Score=27.02 Aligned_cols=19 Identities=32% Similarity=0.545 Sum_probs=16.2
Q ss_pred CceeeCCEEEEEecCCCCc
Q 042860 31 PSVHVGDTIIFKHKFNNSN 49 (235)
Q Consensus 31 ptF~VGDtLvF~y~~~~Hs 49 (235)
.+|++||.+.|-++...|+
T Consensus 41 ~~f~~GDlvLflpt~~~~~ 59 (129)
T PF10377_consen 41 RNFQVGDLVLFLPTRNHNN 59 (129)
T ss_pred ecCCCCCEEEEEecCCCCc
Confidence 4899999999999987454
No 74
>PF05382 Amidase_5: Bacteriophage peptidoglycan hydrolase ; InterPro: IPR008044 This entry is represented by Bacteriophage SFi21, lysin (Cell wall hydrolase; 3.5.1.28 from EC). At least one of proteins in this entry, the Pal protein from the pneumococcal bacteriophage Dp-1 (O03979 from SWISSPROT) has been shown to be an N-acetylmuramoyl-L-alanine amidase []. According to the known modular structure of this and other peptidoglycan hydrolases from the pneumococcal system, the active site should reside within this domain while a C-terminal domain binds to the choline residues of the cell wall teichoic acids [, ].
Probab=25.95 E-value=1.3e+02 Score=25.26 Aligned_cols=36 Identities=14% Similarity=0.381 Sum_probs=28.0
Q ss_pred ceeeCCEEEEEec-----CCCCceEEecCcccccccCCCCcc
Q 042860 32 SVHVGDTIIFKHK-----FNNSNLYIFKNKNAFNLCNFSQAT 68 (235)
Q Consensus 32 tF~VGDtLvF~y~-----~~~HsVv~V~~~~~Y~~Cn~s~p~ 68 (235)
..+-||++++... ..-|..+.+ +....-.|+-....
T Consensus 75 ~~q~GDI~I~g~~g~S~G~~GHtgif~-~~~~iIhc~y~~~g 115 (145)
T PF05382_consen 75 NLQRGDIFIWGRRGNSAGAGGHTGIFM-DNDTIIHCNYGANG 115 (145)
T ss_pred cccCCCEEEEcCCCCCCCCCCeEEEEe-CCCcEEEecCCCCC
Confidence 6799999998665 234999987 78888999975543
No 75
>PF04151 PPC: Bacterial pre-peptidase C-terminal domain; InterPro: IPR007280 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. This domain is normally found at the C terminus of secreted archaeal and bacterial peptidases, the majority of which belong to MEROPS peptidase families M4 (vibriolysin, IPR001570 from INTERPRO), M9A amd M9B (microbial collangenase, IPR002169 from INTERPRO), M28 (aminopeptidase Ap1, IPR007484 from INTERPRO) and S8 (subtilisin family peptidases, IPR000209 from INTERPRO).; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 4DY5_B 4DXZ_A 4DY3_B 3JQW_A 3JQX_C 1NQJ_B 1NQD_A 2O8O_A 1WMF_A 1WME_A ....
Probab=23.11 E-value=2.1e+02 Score=19.95 Aligned_cols=16 Identities=25% Similarity=0.536 Sum_probs=11.4
Q ss_pred cceEEEcCCceeEEEE
Q 042860 76 TSYTWHPSRPGFFYFT 91 (235)
Q Consensus 76 t~~~v~L~~~G~~YFi 91 (235)
..++++...+|+||+-
T Consensus 52 ~~i~~~~~~~GtYyi~ 67 (70)
T PF04151_consen 52 ESITFTAPAAGTYYIR 67 (70)
T ss_dssp EEEEEEESSSEEEEEE
T ss_pred cEEEEEcCCCEEEEEE
Confidence 3456777889987764
No 76
>COG4446 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.80 E-value=70 Score=26.66 Aligned_cols=24 Identities=13% Similarity=0.091 Sum_probs=19.8
Q ss_pred ceeeCCEEEEEecCCCCceEEecCc
Q 042860 32 SVHVGDTIIFKHKFNNSNLYIFKNK 56 (235)
Q Consensus 32 tF~VGDtLvF~y~~~~HsVv~V~~~ 56 (235)
-|..=|-|+|.+..+ |||++|.+.
T Consensus 91 lf~FVDDlEfyl~~d-~~vi~vRSa 114 (141)
T COG4446 91 LFGFVDDLEFYLPQD-HNVIWVRSA 114 (141)
T ss_pred HhhcccceEEecCCC-CceEEEeec
Confidence 577779999999986 999999543
No 77
>PF14326 DUF4384: Domain of unknown function (DUF4384)
Probab=20.45 E-value=83 Score=23.15 Aligned_cols=15 Identities=27% Similarity=0.456 Sum_probs=12.9
Q ss_pred ceeeCCEEEEEecCC
Q 042860 32 SVHVGDTIIFKHKFN 46 (235)
Q Consensus 32 tF~VGDtLvF~y~~~ 46 (235)
.|++||.|.|.+..+
T Consensus 2 ~~~~Ge~v~~~~~~~ 16 (83)
T PF14326_consen 2 VYRVGERVRFRVTSN 16 (83)
T ss_pred cccCCCEEEEEEEeC
Confidence 588999999999864
No 78
>PF15436 PGBA_N: Plasminogen-binding protein pgbA N-terminal
Probab=20.13 E-value=62 Score=29.09 Aligned_cols=31 Identities=23% Similarity=0.397 Sum_probs=24.5
Q ss_pred ceeeCCEEEEEecCCCCceEEecCcccccccC
Q 042860 32 SVHVGDTIIFKHKFNNSNLYIFKNKNAFNLCN 63 (235)
Q Consensus 32 tF~VGDtLvF~y~~~~HsVv~V~~~~~Y~~Cn 63 (235)
..++||.++|+|-.+ ..++...|++.|+.-.
T Consensus 79 ~pk~GD~vil~~~Y~-rallIAPn~e~Y~~i~ 109 (218)
T PF15436_consen 79 VPKKGDEVILNYLYN-RALLIAPNQETYEKIK 109 (218)
T ss_pred ccCCCCEEEEeeccc-ceEEEcCCHHHHHHHH
Confidence 579999999999875 6777778888887533
Done!