Query 042860
Match_columns 235
No_of_seqs 188 out of 853
Neff 5.1
Searched_HMMs 29240
Date Mon Mar 25 18:05:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042860.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042860hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1jer_A Cucumber stellacyanin; 100.0 4.9E-34 1.7E-38 234.0 8.4 98 16-119 2-114 (138)
2 1ws8_A Mavicyanin; oxidized fo 100.0 3.9E-31 1.3E-35 208.7 7.3 92 16-114 1-105 (109)
3 1x9u_A Umecyanin; cupredoxin, 100.0 4.8E-31 1.6E-35 210.4 7.8 92 18-116 2-108 (116)
4 2cbp_A Cucumber basic protein; 100.0 7.2E-30 2.5E-34 197.2 6.8 87 18-112 1-96 (96)
5 1f56_A Plantacyanin; cupredoxi 99.9 1E-26 3.5E-31 178.0 7.5 87 18-112 1-91 (91)
6 1qhq_A Protein (auracyanin); e 99.2 6.1E-11 2.1E-15 94.6 8.7 95 15-112 14-139 (140)
7 2cal_A Rusticyanin; iron respi 99.1 9.1E-11 3.1E-15 96.5 7.8 77 32-112 64-154 (154)
8 1bxv_A Plastocyanin; copper pr 99.1 3.5E-10 1.2E-14 82.9 7.9 82 19-112 4-91 (91)
9 1paz_A Pseudoazurin precursor; 98.9 3.4E-09 1.2E-13 84.2 8.2 70 32-113 24-94 (123)
10 1pmy_A Pseudoazurin; electron 98.9 4.6E-09 1.6E-13 83.5 8.2 70 32-113 24-94 (123)
11 2aan_A Auracyanin A; cupredoxi 98.9 1.6E-08 5.5E-13 80.5 11.1 94 15-112 16-139 (139)
12 1iuz_A Plastocyanin; electron 98.8 8E-09 2.7E-13 77.5 7.4 87 18-112 2-98 (98)
13 1plc_A Plastocyanin; electron 98.8 9.8E-09 3.3E-13 76.8 7.5 86 19-112 2-99 (99)
14 3ef4_A Pseudoazurin, blue copp 98.8 2.5E-08 8.7E-13 79.7 9.1 79 23-113 10-95 (124)
15 2gim_A Plastocyanin; beta shee 98.8 4.7E-08 1.6E-12 73.6 9.9 87 18-112 4-105 (106)
16 3erx_A Pseudoazurin; copper pr 98.7 2.9E-08 1E-12 79.0 7.9 70 32-113 24-94 (123)
17 3tu6_A Pseudoazurin (blue copp 98.7 3.4E-08 1.2E-12 79.1 8.2 70 32-113 26-96 (127)
18 1kdj_A Plastocyanin; electron 98.7 5.8E-08 2E-12 72.7 8.4 86 19-112 2-102 (102)
19 2plt_A Plastocyanin; electron 98.7 3.7E-08 1.3E-12 73.2 7.1 87 18-112 2-98 (98)
20 1byp_A Protein (plastocyanin); 98.7 3.4E-08 1.2E-12 73.6 6.9 86 19-112 2-99 (99)
21 1b3i_A PETE protein, protein ( 98.6 1.1E-07 3.7E-12 70.6 8.1 85 19-112 4-97 (97)
22 1pcs_A Plastocyanin; electron 98.5 4.2E-07 1.4E-11 67.5 8.5 87 18-112 3-98 (98)
23 4hci_A Cupredoxin 1; structura 98.5 9.8E-08 3.4E-12 71.9 4.2 84 15-112 11-100 (100)
24 2ux6_A Pseudoazurin; type-1 co 98.1 5.2E-06 1.8E-10 65.6 7.4 68 32-113 24-92 (122)
25 3cvb_A Plastocyanin; cupredoxi 98.1 9.1E-06 3.1E-10 60.5 7.5 85 18-112 3-104 (105)
26 3ay2_A Lipid modified azurin p 98.1 1.5E-05 5.1E-10 66.7 9.0 91 17-112 42-166 (167)
27 1cuo_A Protein (azurin ISO-2); 98.0 3.1E-05 1.1E-09 61.8 9.5 90 18-112 3-128 (129)
28 2ccw_A Azurin II, AZN-2; elect 97.9 8.3E-05 2.8E-09 59.4 9.8 90 18-112 3-128 (129)
29 1iko_P Ephrin-B2; greek KEY, g 97.9 1.6E-05 5.4E-10 67.4 5.4 81 33-114 26-141 (178)
30 2iaa_C Azurin; quinoprotein, t 97.8 0.00013 4.5E-09 58.2 9.7 89 19-112 3-127 (128)
31 2ov0_A Amicyanin; beta-sandwic 97.7 6.9E-05 2.4E-09 56.7 6.9 80 16-112 17-105 (105)
32 1nwp_A Azurin; electron transp 97.7 0.00014 4.9E-09 58.0 8.8 90 18-112 3-128 (128)
33 1id2_A Amicyanin; beta barrel, 97.7 9.7E-05 3.3E-09 56.2 6.8 69 32-112 37-106 (106)
34 3czu_B Ephrin-A1; ATP-binding, 97.6 0.00016 5.4E-09 61.5 8.3 106 2-114 14-161 (182)
35 2x11_B Ephrin-A5; receptor-sig 97.6 0.00035 1.2E-08 59.1 9.3 81 32-115 53-164 (177)
36 3d12_B Ephrin-B3; beta propell 97.6 0.00014 4.6E-09 59.6 6.4 80 32-112 23-140 (141)
37 2vsm_B Ephrin-B2; developmenta 97.5 0.0001 3.5E-09 60.2 5.5 80 33-113 25-139 (140)
38 3c75_A Amicyanin; copper prote 97.5 0.00018 6.2E-09 57.0 6.8 69 32-112 63-132 (132)
39 1iby_A Nitrosocyanin; RED copp 97.3 0.00061 2.1E-08 51.6 6.7 68 32-112 41-111 (112)
40 2cua_A Protein (CUA); CUA cent 97.0 0.0018 6.2E-08 51.8 7.5 81 18-112 46-134 (135)
41 1shx_A Ephrin-A5; ephrin signa 96.8 0.0047 1.6E-07 50.3 7.9 80 32-114 24-134 (138)
42 3fsa_A Azurin; copper, cupredo 96.4 0.02 6.7E-07 45.8 9.5 86 19-112 4-125 (125)
43 2wo3_B Ephrin-A2; transferase- 96.4 0.012 4.2E-07 48.8 8.2 78 32-114 33-144 (157)
44 3s8f_B Cytochrome C oxidase su 95.9 0.025 8.7E-07 47.1 8.0 68 32-112 96-167 (168)
45 2dv6_A Nitrite reductase; elec 95.6 0.023 7.8E-07 52.4 7.1 73 32-114 58-133 (447)
46 3hei_B Ephrin-A1; EPH receptor 95.2 0.059 2E-06 43.5 7.5 78 32-112 23-131 (132)
47 3sbq_A Nitrous-oxide reductase 95.1 0.034 1.2E-06 54.9 6.8 68 32-113 561-637 (638)
48 1fwx_A Nitrous oxide reductase 95.0 0.041 1.4E-06 54.0 7.2 70 32-114 516-593 (595)
49 1oe1_A Dissimilatory copper-co 87.7 1.6 5.4E-05 38.6 7.8 76 32-114 68-153 (336)
50 1kbv_A ANIA, major outer membr 87.2 1.2 4E-05 39.7 6.6 78 32-113 73-156 (327)
51 1mzy_A Copper-containing nitri 85.4 1.9 6.6E-05 38.1 7.0 76 32-114 67-153 (333)
52 3gdc_A Multicopper oxidase; be 84.3 1.1 3.9E-05 39.0 5.0 77 32-113 198-288 (288)
53 2zoo_A Probable nitrite reduct 83.4 1.7 6E-05 39.8 6.0 79 32-114 63-147 (442)
54 3gdc_A Multicopper oxidase; be 81.1 6.3 0.00022 34.2 8.5 78 32-114 69-155 (288)
55 1cyx_A CYOA; electron transpor 80.1 2.5 8.6E-05 36.2 5.4 32 76-112 81-115 (205)
56 3cg8_A Laccase; oxidoreductase 77.4 5.6 0.00019 35.6 7.1 78 32-114 212-307 (343)
57 2bw4_A Copper-containing nitri 77.2 5.4 0.00018 35.2 6.9 76 32-114 74-159 (340)
58 3kw8_A Laccase, putative coppe 76.6 5.7 0.00019 34.3 6.7 78 32-114 171-266 (276)
59 1yel_A AT1G16640; CESG, protei 73.3 1.5 5E-05 32.8 1.8 16 31-46 76-91 (104)
60 1oe1_A Dissimilatory copper-co 71.9 26 0.00089 30.6 10.0 95 17-114 209-319 (336)
61 2j5w_A Ceruloplasmin, ferroxid 67.7 11 0.00038 38.9 7.5 87 19-114 620-718 (1065)
62 3hb3_B Cytochrome C oxidase su 67.0 5.2 0.00018 35.9 4.3 33 76-113 229-264 (298)
63 3g5w_A Multicopper oxidase typ 67.0 4.9 0.00017 35.6 4.1 79 32-113 37-125 (318)
64 2gsm_B Cytochrome C oxidase su 65.0 6.2 0.00021 34.6 4.3 33 76-113 211-246 (262)
65 2zwn_A Two-domain type laccase 63.7 7.6 0.00026 34.5 4.7 79 32-113 38-126 (339)
66 1aoz_A Ascorbate oxidase; oxid 63.2 23 0.00078 33.5 8.2 78 32-114 37-124 (552)
67 1v54_B Cytochrome C oxidase po 63.2 6.3 0.00021 33.9 3.9 32 77-113 181-215 (227)
68 4i1k_A B3 domain-containing tr 59.6 4.8 0.00016 32.2 2.4 21 26-46 106-130 (146)
69 1kbv_A ANIA, major outer membr 59.3 13 0.00043 32.8 5.3 42 70-113 266-307 (327)
70 2uxt_A Protein SUFI, SUFI; oxi 58.6 11 0.00038 34.9 5.0 74 32-114 53-139 (451)
71 3g5w_A Multicopper oxidase typ 57.4 18 0.00063 31.8 6.1 41 70-113 230-276 (318)
72 2q9o_A Laccase-1; multicopper 54.7 23 0.00079 33.7 6.7 77 32-113 70-157 (559)
73 3t6v_A Laccase; beta barrel, o 53.3 38 0.0013 31.9 7.8 78 32-114 38-130 (495)
74 1zpu_A Iron transport multicop 52.7 33 0.0011 32.4 7.4 78 32-114 37-125 (534)
75 2zoo_A Probable nitrite reduct 50.7 25 0.00087 31.9 6.0 88 18-114 189-298 (442)
76 3pxl_A Laccase; 4-copper prote 50.6 44 0.0015 31.5 7.8 78 32-114 37-129 (499)
77 3sqr_A Laccase; multicopper ox 47.4 55 0.0019 31.6 8.0 77 32-113 101-187 (580)
78 1sdd_A Coagulation factor V; c 46.3 4.1 0.00014 35.7 -0.1 78 32-114 218-301 (306)
79 2dv6_A Nitrite reductase; elec 46.2 46 0.0016 30.1 7.0 41 70-113 393-433 (447)
80 1fft_B Ubiquinol oxidase; elec 45.9 8.4 0.00029 34.8 1.9 66 32-112 154-225 (315)
81 1sdd_B Coagulation factor V; c 45.2 28 0.00094 33.6 5.6 77 32-113 242-327 (647)
82 2j5w_A Ceruloplasmin, ferroxid 39.9 36 0.0012 35.1 5.8 78 32-114 973-1059(1065)
83 3t9w_A Small laccase, multi-co 37.3 1.6E+02 0.0054 25.4 8.8 79 32-119 61-168 (299)
84 1sdd_A Coagulation factor V; c 37.3 81 0.0028 27.3 6.9 80 32-114 63-167 (306)
85 3zx1_A Oxidoreductase, putativ 36.6 27 0.00091 32.9 3.9 76 32-112 388-480 (481)
86 1wid_A DNA-binding protein RAV 36.3 14 0.00048 28.6 1.6 15 31-45 90-104 (130)
87 1mzy_A Copper-containing nitri 36.1 28 0.00094 30.5 3.7 42 70-113 277-318 (333)
88 3aw5_A Multicopper oxidase; be 35.6 24 0.00083 32.6 3.4 77 32-115 41-128 (448)
89 1v10_A Laccase; multicopper bl 35.1 77 0.0026 29.7 6.8 78 32-113 58-149 (521)
90 3l6w_A Hemocyanin 1; cupredoxi 34.8 36 0.0012 32.7 4.4 73 32-112 414-491 (491)
91 3tas_A Small laccase, multi-co 34.7 1.6E+02 0.0053 25.5 8.4 76 32-114 45-147 (313)
92 1hfu_A Laccase 1; oxidoreducta 33.1 76 0.0026 29.5 6.4 78 32-113 37-128 (503)
93 3kw8_A Laccase, putative coppe 32.3 1.8E+02 0.0062 24.6 8.2 80 32-114 39-141 (276)
94 2r7e_B Coagulation factor VIII 30.9 51 0.0017 32.9 5.0 80 32-114 202-298 (770)
95 2r7e_A Coagulation factor VIII 29.7 17 0.00056 36.2 1.2 78 32-114 629-712 (742)
96 2r7e_A Coagulation factor VIII 27.5 54 0.0018 32.5 4.5 78 32-114 247-330 (742)
97 2r7e_B Coagulation factor VIII 27.3 17 0.00058 36.4 0.8 76 32-112 371-455 (770)
98 3zx1_A Oxidoreductase, putativ 27.1 80 0.0027 29.6 5.4 77 32-115 85-173 (481)
99 3iuw_A Activating signal coint 26.8 24 0.00081 26.0 1.3 15 32-46 37-52 (83)
100 2z0t_A Putative uncharacterize 26.2 25 0.00085 27.0 1.4 11 31-41 32-42 (109)
101 2g23_A PHS, phenoxazinone synt 24.6 1.1E+02 0.0039 29.6 6.1 39 73-114 553-592 (612)
102 2vb2_X Copper protein, cation 24.5 46 0.0016 24.3 2.6 15 32-46 61-75 (88)
103 2qcp_X Cation efflux system pr 22.8 57 0.0019 23.3 2.7 15 32-46 53-67 (80)
104 3tas_A Small laccase, multi-co 22.3 3.7E+02 0.013 23.1 9.9 31 83-116 244-274 (313)
105 2l55_A SILB,silver efflux prot 22.2 77 0.0026 22.7 3.4 16 31-46 46-61 (82)
106 2wgn_B Inhibitor of cysteine p 22.2 2.8E+02 0.0094 21.5 7.9 72 17-89 23-106 (132)
107 2bw4_A Copper-containing nitri 22.1 72 0.0025 27.8 3.8 41 70-113 283-324 (340)
108 1xne_A Hypothetical protein PF 21.4 26 0.00089 27.0 0.7 11 32-42 34-44 (113)
109 3abg_A Bilirubin oxidase; clea 20.7 2.6E+02 0.0088 26.3 7.6 81 32-123 72-167 (534)
No 1
>1jer_A Cucumber stellacyanin; electron transport, copper, glycoprotein, hydroxylation; 1.60A {Cucumis sativus} SCOP: b.6.1.1
Probab=100.00 E-value=4.9e-34 Score=234.01 Aligned_cols=98 Identities=30% Similarity=0.493 Sum_probs=85.8
Q ss_pred cceEEEecCCCCCCCC-------------ceeeCCEEEEEecCCCCceEEecCcccccccCCCCccc-ccCCCCcceEEE
Q 042860 16 QSATIFVDGISEWKNP-------------SVHVGDTIIFKHKFNNSNLYIFKNKNAFNLCNFSQATL-LTNPNSTSYTWH 81 (235)
Q Consensus 16 ~A~~~~VGg~~GW~~p-------------tF~VGDtLvF~y~~~~HsVv~V~~~~~Y~~Cn~s~p~~-~s~g~st~~~v~ 81 (235)
+|++|+|||+.||+.+ +|+|||+|+|+|+.++|||+||.+|++|+.|+.++++. +++|++ +|+
T Consensus 2 ~a~~~~VGg~~GW~~~~~~~~Y~~Wa~~~~F~vGD~LvF~y~~~~HsV~~V~~~~~y~~C~~s~p~~~~~~G~~---~v~ 78 (138)
T 1jer_A 2 QSTVHIVGDNTGWSVPSSPNFYSQWAAGKTFRVGDSLQFNFPANAHNVHEMETKQSFDACNFVNSDNDVERTSP---VIE 78 (138)
T ss_dssp CCCEEETTGGGCSSCCSSTTHHHHHHHTCCEETTCEEEECCCTTTCCCEEESCHHHHHHTCCTTSCCCCCCCSC---EEE
T ss_pred CceEEEECCcCcCcCCCCccchhhhhcCCcCcCCCEEEEeecCCCceEEEeCchhhcCccCCCCccccccCCCe---EEE
Confidence 5789999999999764 89999999999999899999988999999999999884 777765 799
Q ss_pred c-CCceeEEEEEcCCCCCccccCCceeEEEEeccCCCCC
Q 042860 82 P-SRPGFFYFTFNNGSLQTCNKSSQKLSIKVSAVSSTPS 119 (235)
Q Consensus 82 L-~~~G~~YFiCssg~~~HC~~~GqKl~I~V~~~~~~ps 119 (235)
| +++|++|||| ++++|| ++||||+|+|....+.++
T Consensus 79 L~~~~G~~YFic--g~~gHC-~~GmKl~I~V~~~~~~~~ 114 (138)
T 1jer_A 79 RLDELGMHYFVC--TVGTHC-SNGQKLSINVVAANATVS 114 (138)
T ss_dssp ECCSSEEEEEEC--CSTTTG-GGTCEEEEEEECCC----
T ss_pred eccCCcCEEEEc--CCCCcc-ccCCEEEEEEcCCCCCCC
Confidence 9 9999999999 589999 999999999998655433
No 2
>1ws8_A Mavicyanin; oxidized form, phytocyanin, cupredoxin, electron transport; 1.60A {Cucurbita pepo} SCOP: b.6.1.1 PDB: 1ws7_A
Probab=99.97 E-value=3.9e-31 Score=208.74 Aligned_cols=92 Identities=28% Similarity=0.480 Sum_probs=83.2
Q ss_pred cceEEEecCCCCCCC------------CceeeCCEEEEEecCCCCceEEecCcccccccCCCCccc-ccCCCCcceEEEc
Q 042860 16 QSATIFVDGISEWKN------------PSVHVGDTIIFKHKFNNSNLYIFKNKNAFNLCNFSQATL-LTNPNSTSYTWHP 82 (235)
Q Consensus 16 ~A~~~~VGg~~GW~~------------ptF~VGDtLvF~y~~~~HsVv~V~~~~~Y~~Cn~s~p~~-~s~g~st~~~v~L 82 (235)
+|++|+|||+.||+. ++|+|||+|+|+|.++.|||+|| ++++|+.|+.++++. +++|++ +|+|
T Consensus 1 ~a~~~~VG~~~GW~~~~~~~Y~~Wa~~~~F~vGD~LvF~y~~~~hsV~~V-~~~~y~~C~~~~p~~~~~~G~~---~v~L 76 (109)
T 1ws8_A 1 MATVHKVGDSTGWTTLVPYDYAKWASSNKFHVGDSLLFNYNNKFHNVLQV-DQEQFKSCNSSSPAASYTSGAD---SIPL 76 (109)
T ss_dssp CCCEEETTGGGCSCSSSCCCHHHHHHTSCBCTTCEEEEECCTTTCCEEEE-CHHHHHHTCCSSCSEEECSSEE---EEEC
T ss_pred CCcEEEeCCCCCccCCCCcChhHhhcCCcCcCCCEEEEeecCCCceEEEE-ChHHCCcccCCCcccccCCCCE---EEEE
Confidence 368999999999975 38999999999999989999999 999999999999884 777754 7999
Q ss_pred CCceeEEEEEcCCCCCccccCCceeEEEEecc
Q 042860 83 SRPGFFYFTFNNGSLQTCNKSSQKLSIKVSAV 114 (235)
Q Consensus 83 ~~~G~~YFiCssg~~~HC~~~GqKl~I~V~~~ 114 (235)
+++|++|||| ++++|| ++||||+|+|.+.
T Consensus 77 ~~~G~~yFic--~~~gHC-~~GmKl~I~V~~~ 105 (109)
T 1ws8_A 77 KRPGTFYFLC--GIPGHC-QLGQKVEIKVDPG 105 (109)
T ss_dssp CSSEEEEEEC--CSTTTT-TTTCEEEEEECC-
T ss_pred CCCcCEEEEC--CCCCcc-cCCCEEEEEEcCC
Confidence 9999999999 599999 9999999999874
No 3
>1x9u_A Umecyanin; cupredoxin, phytocyanin, copper binding site, beta barrel, electron transport; 1.80A {Armoracia rusticana} PDB: 1x9r_A
Probab=99.97 E-value=4.8e-31 Score=210.39 Aligned_cols=92 Identities=27% Similarity=0.407 Sum_probs=81.1
Q ss_pred eEEEecCCCCCCC-------------CceeeCCEEEEEecCCCCceEEecCcccccccCCCCccc-ccCCCCcceEEEcC
Q 042860 18 ATIFVDGISEWKN-------------PSVHVGDTIIFKHKFNNSNLYIFKNKNAFNLCNFSQATL-LTNPNSTSYTWHPS 83 (235)
Q Consensus 18 ~~~~VGg~~GW~~-------------ptF~VGDtLvF~y~~~~HsVv~V~~~~~Y~~Cn~s~p~~-~s~g~st~~~v~L~ 83 (235)
++|+|||+.||+. ++|+|||+|+|+|.+++|||+|| +|++|+.|+.++++. +++|+ ++|+|+
T Consensus 2 ~~~~VG~~~GW~~~~~~~~Y~~Wa~~~~f~vGD~L~F~y~~~~HsV~~V-~~~~y~~C~~~~~~~~~~~G~---~~v~l~ 77 (116)
T 1x9u_A 2 EDYDVGGDMEWKRPSDPKFYITWATGKTFRVGDELEFDFAAGMHDVAVV-TKDAFDNCKKENPISHMTTPP---VKIMLN 77 (116)
T ss_dssp CEEETTGGGCSSCCSSTTHHHHHHTTCCEETTCEEEECCCTTTCCEEEE-CHHHHHTTCCSSCSEEECSSS---EEEECC
T ss_pred eEEEECCcCcCcCCCCCcchhhccccccCcCCCEEEEEecCCCCeEEEE-ChhhcCccCCCCCccccCCCC---eEEEEC
Confidence 5799999999985 38999999999999989999999 999999999999874 77775 479999
Q ss_pred CceeEEEEEcCCCCCccccCCceeEE-EEeccCC
Q 042860 84 RPGFFYFTFNNGSLQTCNKSSQKLSI-KVSAVSS 116 (235)
Q Consensus 84 ~~G~~YFiCssg~~~HC~~~GqKl~I-~V~~~~~ 116 (235)
++|++|||| ++++|| ++||||+| +|...++
T Consensus 78 ~~G~~yFic--~~~~HC-~~Gmkl~In~V~~~~~ 108 (116)
T 1x9u_A 78 TTGPQYYIC--TVGDHC-RVGQKLSINVVGAGGA 108 (116)
T ss_dssp SCEEEEEEC--CSTTTT-TTTCEEEEEEECC---
T ss_pred CCCCEEEEC--CCCCcc-ccCCEEEEEEECCCCC
Confidence 999999999 589999 99999999 8877544
No 4
>2cbp_A Cucumber basic protein; electron transport, phytocyanin, type 1 copper protein; 1.80A {Cucumis sativus} SCOP: b.6.1.1
Probab=99.96 E-value=7.2e-30 Score=197.18 Aligned_cols=87 Identities=22% Similarity=0.388 Sum_probs=79.1
Q ss_pred eEEEecCCCCCCC--------CceeeCCEEEEEecCCCCceEEecCcccccccCCCCccc-ccCCCCcceEEEcCCceeE
Q 042860 18 ATIFVDGISEWKN--------PSVHVGDTIIFKHKFNNSNLYIFKNKNAFNLCNFSQATL-LTNPNSTSYTWHPSRPGFF 88 (235)
Q Consensus 18 ~~~~VGg~~GW~~--------ptF~VGDtLvF~y~~~~HsVv~V~~~~~Y~~Cn~s~p~~-~s~g~st~~~v~L~~~G~~ 88 (235)
++|+|||+.||+. ++|++||+|+|+|.+++|||+|| ++++|+.|+.++++. +++|++ +|+| ++|++
T Consensus 1 ~~~~VG~~~GW~~~y~~Wa~~~~f~vGD~L~F~y~~~~hsV~~v-~~~~y~~C~~~~~~~~~~~G~~---~v~L-~~g~~ 75 (96)
T 2cbp_A 1 AVYVVGGSGGWTFNTESWPKGKRFRAGDILLFNYNPSMHNVVVV-NQGGFSTCNTPAGAKVYTSGRD---QIKL-PKGQS 75 (96)
T ss_dssp CEEETTGGGCSCSSCTTTTTTCCBCTTCEEEEECCTTTCCEEEE-CHHHHHHTCCCTTCEEECSSEE---EEEC-CSEEE
T ss_pred CEEEECCcCCCccChhhhccCceEcCCCEEEEEecCCCCEEEEE-CHHHCCccCCCCCcccccCCCe---EEEe-cCCCE
Confidence 4799999999986 59999999999999989999998 899999999999874 777754 7899 89999
Q ss_pred EEEEcCCCCCccccCCceeEEEEe
Q 042860 89 YFTFNNGSLQTCNKSSQKLSIKVS 112 (235)
Q Consensus 89 YFiCssg~~~HC~~~GqKl~I~V~ 112 (235)
|||| ++++|| ++||||+|+|+
T Consensus 76 yFic--~~~~HC-~~Gmkl~I~Vl 96 (96)
T 2cbp_A 76 YFIC--NFPGHC-QSGMKIAVNAL 96 (96)
T ss_dssp EEEC--CSTTTG-GGTCEEEEEEC
T ss_pred EEEc--CCCCcc-ccCCEEEEEEC
Confidence 9999 589999 99999999985
No 5
>1f56_A Plantacyanin; cupredoxin, copper protein, beta barrel, plant protein; 2.05A {Spinacia oleracea} SCOP: b.6.1.1
Probab=99.93 E-value=1e-26 Score=178.04 Aligned_cols=87 Identities=17% Similarity=0.248 Sum_probs=72.5
Q ss_pred eEEEecC--CCCCC-CCceeeCCEEEEEecCCCCceEEecCcccccccCCCCccc-ccCCCCcceEEEcCCceeEEEEEc
Q 042860 18 ATIFVDG--ISEWK-NPSVHVGDTIIFKHKFNNSNLYIFKNKNAFNLCNFSQATL-LTNPNSTSYTWHPSRPGFFYFTFN 93 (235)
Q Consensus 18 ~~~~VGg--~~GW~-~ptF~VGDtLvF~y~~~~HsVv~V~~~~~Y~~Cn~s~p~~-~s~g~st~~~v~L~~~G~~YFiCs 93 (235)
++|+||= ...|. .++|++||+|+|+|.+++|||+|| ++++|+.|+.++++. +++|++ +|+|+ +|++||||
T Consensus 1 ~~y~VgW~~~~~Wa~~~~f~vGD~L~F~y~~~~hsV~~v-~~~~y~~C~~~~~~~~~~~G~~---~v~L~-~g~~yFic- 74 (91)
T 1f56_A 1 AVYNIGWSFNVNGARGKSFRAGDVLVFKYIKGQHNVVAV-NGRGYASCSAPRGARTYSSGQD---RIKLT-RGQNYFIC- 74 (91)
T ss_dssp CEEEEECSSSCBSCTTCCBCTTCEEEEECCBTTBCEEEE-CHHHHHTTCCCTTCEEECSSEE---EEECC-SEEEEEEC-
T ss_pred CEEEEeCCCCCcCcCCccEeCCCEEEEEccCCCCeEEEE-CHHHcCCcCCCCCcccccCCCc---EEEeC-CCCeEEEc-
Confidence 4678830 02233 259999999999999989999998 899999999999874 777754 78996 89999999
Q ss_pred CCCCCccccCCceeEEEEe
Q 042860 94 NGSLQTCNKSSQKLSIKVS 112 (235)
Q Consensus 94 sg~~~HC~~~GqKl~I~V~ 112 (235)
+.++|| ++||||+|+|.
T Consensus 75 -~~~~HC-~~Gmkl~I~v~ 91 (91)
T 1f56_A 75 -SFPGHC-GGGMKIAINAK 91 (91)
T ss_dssp -CSTTTT-TTTCEEEEEEC
T ss_pred -CCCCcc-ccCCEEEEEEC
Confidence 589999 99999999984
No 6
>1qhq_A Protein (auracyanin); electron transfer, cupredoxin, blue copper protein, azurin-L thermophIle; 1.55A {Chloroflexus aurantiacus} SCOP: b.6.1.1 PDB: 1ov8_A
Probab=99.18 E-value=6.1e-11 Score=94.59 Aligned_cols=95 Identities=14% Similarity=0.172 Sum_probs=64.6
Q ss_pred ccceEEEecCC-CCCCCC----ceeeCCEEEEEecC-----CCCceEEecCccccccc-----------------CCCCc
Q 042860 15 AQSATIFVDGI-SEWKNP----SVHVGDTIIFKHKF-----NNSNLYIFKNKNAFNLC-----------------NFSQA 67 (235)
Q Consensus 15 a~A~~~~VGg~-~GW~~p----tF~VGDtLvF~y~~-----~~HsVv~V~~~~~Y~~C-----------------n~s~p 67 (235)
+..+++.|+-. .+|.+. +++.||+|.|+|.+ ..||++......++..+ +..+.
T Consensus 14 ~~~~~v~V~~~~~~~~F~P~~i~v~~G~tV~~~~~N~~~~~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (140)
T 1qhq_A 14 TPAQTVEVRAAPDALAFAQTSLSLPANTVVRLDFVNQNNLGVQHNWVLVNGGDDVAAAVNTAAQNNADALFVPPPDTPNA 93 (140)
T ss_dssp CCSEEEEEEBCSSSSSBSCSEEEEETTCEEEEEEEECCSSCCCBCCEEESSSHHHHHHHHHHHHTCGGGTTCCCTTCTTE
T ss_pred CCCEEEEEEEeCCCceEeCCeEEECCCCEEEEEEECCCCCCCceeEEEeccCcchhhhhhhhhhhcccccccCccccccc
Confidence 34567878753 357652 78999999988865 46999986211122111 00111
Q ss_pred ----ccccCCCCcceEEEcCCceeEEEEEcCCCCCccccCCceeEEEEe
Q 042860 68 ----TLLTNPNSTSYTWHPSRPGFFYFTFNNGSLQTCNKSSQKLSIKVS 112 (235)
Q Consensus 68 ----~~~s~g~st~~~v~L~~~G~~YFiCssg~~~HC~~~GqKl~I~V~ 112 (235)
..+..|.+..++|+++++|.|||+|+ ..+|| +.|||+.|+|.
T Consensus 94 ~~~t~~l~pG~~~~~~~~~~~~G~y~f~C~--~~~H~-~~GM~g~i~V~ 139 (140)
T 1qhq_A 94 LAWTAMLNAGESGSVTFRTPAPGTYLYICT--FPGHY-LAGMKGTLTVT 139 (140)
T ss_dssp EEECCCBCTTEEEEEEEECCSSEEEEEECC--STTTT-TTTCEEEEEEE
T ss_pred cccceeeCCCceeEEEEEeCCCeeEEEEeC--CcCHh-hcCCEEEEEEc
Confidence 12444544567888999999999994 88999 99999999996
No 7
>2cal_A Rusticyanin; iron respiratory electron transport chain, blue protein, electron transport, metal- binding, periplasmic; 1.10A {Thiobacillus ferrooxidans} PDB: 1cur_A 1gy2_A 1a3z_A 1e30_A 1gy1_A 1rcy_A 1a8z_A 2cak_A
Probab=99.13 E-value=9.1e-11 Score=96.47 Aligned_cols=77 Identities=17% Similarity=0.293 Sum_probs=60.9
Q ss_pred ceeeCCEEEEEecCC----CCceEEecCcccccccCCCCccc--------ccCCC--CcceEEEcCCceeEEEEEcCCCC
Q 042860 32 SVHVGDTIIFKHKFN----NSNLYIFKNKNAFNLCNFSQATL--------LTNPN--STSYTWHPSRPGFFYFTFNNGSL 97 (235)
Q Consensus 32 tF~VGDtLvF~y~~~----~HsVv~V~~~~~Y~~Cn~s~p~~--------~s~g~--st~~~v~L~~~G~~YFiCssg~~ 97 (235)
++++||+|+|++.+. .||+.++.....|+.|.....+. +..|. +.+++|++ ++|.|||+|+ ..
T Consensus 64 ~V~~GD~V~~~~tN~~~~~~H~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~PG~sgt~t~tft~-~pGtY~y~C~--~~ 140 (154)
T 2cal_A 64 EIPAGATVDVTFINTNKGFGHSFDITKKGPPYAVMPVIDPIVAGTGFSPVPKDGKFGYTDFTWHP-TAGTYYYVCQ--IP 140 (154)
T ss_dssp EECTTCEEEEEEEECCTTCCCCCEEESCCSCCCSSCCCCSEEEEBCCCCCCBTTBEEEEEEEECC-CSEEEEEECC--ST
T ss_pred EEeCCCEEEEEEEcCCCCeeeEEEEeecCcchhccccccccccccccccccCCCCceEEEEEEEE-CCceEEEECC--CC
Confidence 689999999999652 59999985566888887665432 23344 44678899 9999999994 89
Q ss_pred CccccCCceeEEEEe
Q 042860 98 QTCNKSSQKLSIKVS 112 (235)
Q Consensus 98 ~HC~~~GqKl~I~V~ 112 (235)
+|| +.|||..|.|.
T Consensus 141 gH~-~~GM~G~IiV~ 154 (154)
T 2cal_A 141 GMA-ATGMFGKIVVK 154 (154)
T ss_dssp TTG-GGTCEEEEEEC
T ss_pred CHH-HCCCEEEEEEC
Confidence 999 99999999984
No 8
>1bxv_A Plastocyanin; copper protein, electron transfer; 1.80A {Synechococcus elongatus} SCOP: b.6.1.1 PDB: 1bxu_A
Probab=99.08 E-value=3.5e-10 Score=82.90 Aligned_cols=82 Identities=13% Similarity=0.169 Sum_probs=58.3
Q ss_pred EEEecCC-CCCCC-C---ceeeCCEEEEEecC-CCCceEEecCcccccccCCCCcccccCCCCcceEEEcCCceeEEEEE
Q 042860 19 TIFVDGI-SEWKN-P---SVHVGDTIIFKHKF-NNSNLYIFKNKNAFNLCNFSQATLLTNPNSTSYTWHPSRPGFFYFTF 92 (235)
Q Consensus 19 ~~~VGg~-~GW~~-p---tF~VGDtLvF~y~~-~~HsVv~V~~~~~Y~~Cn~s~p~~~s~g~st~~~v~L~~~G~~YFiC 92 (235)
++.||++ .+|.+ | ++++||+|+|++.. ..|||... ....+. .....+..|. +++++++++|.|+|+|
T Consensus 4 ~v~~~~~~~~~~f~P~~i~v~~Gd~V~~~n~~~~~H~v~~~-~~~~~~----~~~~~~~~g~--~~~~~f~~~G~y~~~C 76 (91)
T 1bxv_A 4 AIKMGADNGMLAFEPSTIEIQAGDTVQWVNNKLAPHNVVVE-GQPELS----HKDLAFSPGE--TFEATFSEPGTYTYYC 76 (91)
T ss_dssp EEEESCTTSCSSEESSEEEECTTCEEEEEECSSCCEEEEET-TCGGGC----EEEEECSTTC--EEEEECCSCEEEEEEC
T ss_pred EEEEecCCCccEEeCCEEEECCCCEEEEEECCCCCcEEEEe-CCCccC----cccceeCCCC--EEEEEeCCCEEEEEEe
Confidence 5667764 45654 2 79999999999874 56999974 332221 1112344443 3678889999999999
Q ss_pred cCCCCCccccCCceeEEEEe
Q 042860 93 NNGSLQTCNKSSQKLSIKVS 112 (235)
Q Consensus 93 ssg~~~HC~~~GqKl~I~V~ 112 (235)
..|| +.|||..|.|.
T Consensus 77 ----~~H~-~~gM~g~i~V~ 91 (91)
T 1bxv_A 77 ----EPHR-GAGMVGKIVVQ 91 (91)
T ss_dssp ----TTTG-GGTCEEEEEEC
T ss_pred ----CCCc-cCCCEEEEEEC
Confidence 2899 99999999984
No 9
>1paz_A Pseudoazurin precursor; electron transfer(cuproprotein); 1.55A {Alcaligenes faecalis} SCOP: b.6.1.1 PDB: 1pza_A 1pzb_A 1pzc_A 2p80_D 3nyk_A 3paz_A 8paz_A 4paz_A 5paz_A 6paz_A 7paz_A 1py0_A*
Probab=98.91 E-value=3.4e-09 Score=84.18 Aligned_cols=70 Identities=17% Similarity=0.169 Sum_probs=51.9
Q ss_pred ceeeCCEEEEEecCCCCceEEecCcccccccCCCCcc-cccCCCCcceEEEcCCceeEEEEEcCCCCCccccCCceeEEE
Q 042860 32 SVHVGDTIIFKHKFNNSNLYIFKNKNAFNLCNFSQAT-LLTNPNSTSYTWHPSRPGFFYFTFNNGSLQTCNKSSQKLSIK 110 (235)
Q Consensus 32 tF~VGDtLvF~y~~~~HsVv~V~~~~~Y~~Cn~s~p~-~~s~g~st~~~v~L~~~G~~YFiCssg~~~HC~~~GqKl~I~ 110 (235)
++++||+|.|.+....|||+.. +.|...... +....+. +++|+++++|.|+|+|+ .|| ++||+..|+
T Consensus 24 ~V~~GdtV~f~~~~~~H~v~~~------~~~~p~~~~~~~~~pG~-t~~~tF~~~G~y~y~C~----~H~-~~gM~G~I~ 91 (123)
T 1paz_A 24 KANPGDTVTFIPVDKGHNVESI------KDMIPEGAEKFKSKINE-NYVLTVTQPGAYLVKCT----PHY-AMGMIALIA 91 (123)
T ss_dssp EECTTCEEEEEESSSSCCCEEC------TTCSCTTCCCCBCCTTC-CEEEECCSCEEEEEECT----TTG-GGTCEEEEE
T ss_pred EECCCCEEEEEECCCCeEEEEe------cccCCCCccceecCCCC-EEEEEeCCCEEEEEEeC----Ccc-cCCCEEEEE
Confidence 7899999999998777999863 122222211 2222333 47899999999999993 599 999999999
Q ss_pred Eec
Q 042860 111 VSA 113 (235)
Q Consensus 111 V~~ 113 (235)
|..
T Consensus 92 V~~ 94 (123)
T 1paz_A 92 VGD 94 (123)
T ss_dssp ESS
T ss_pred EcC
Confidence 975
No 10
>1pmy_A Pseudoazurin; electron transfer(cuproprotein); 1.50A {Methylobacterium extorquens} SCOP: b.6.1.1
Probab=98.89 E-value=4.6e-09 Score=83.45 Aligned_cols=70 Identities=14% Similarity=0.087 Sum_probs=52.2
Q ss_pred ceeeCCEEEEEecCCCCceEEecCcccccccCCCCcc-cccCCCCcceEEEcCCceeEEEEEcCCCCCccccCCceeEEE
Q 042860 32 SVHVGDTIIFKHKFNNSNLYIFKNKNAFNLCNFSQAT-LLTNPNSTSYTWHPSRPGFFYFTFNNGSLQTCNKSSQKLSIK 110 (235)
Q Consensus 32 tF~VGDtLvF~y~~~~HsVv~V~~~~~Y~~Cn~s~p~-~~s~g~st~~~v~L~~~G~~YFiCssg~~~HC~~~GqKl~I~ 110 (235)
++++||+|.|++....|||+.. . .|...... +...++. +++|+++++|.|+|+|+ .|| ++||+..|+
T Consensus 24 ~V~~GdtV~f~n~~~~H~v~~~-~-----~~~p~~~~~~~~~pG~-t~~~tF~~~G~y~y~C~----~H~-~~gM~G~I~ 91 (123)
T 1pmy_A 24 RLKPGDSIKFLPTDKGHNVETI-K-----GMAPDGADYVKTTVGQ-EAVVKFDKEGVYGFKCA----PHY-MMGMVALVV 91 (123)
T ss_dssp EECTTCEEEEECSSSSCCCEEC-T-----TSSCTTCCCCBCCTTS-CEEEECCSCEEEEEECS----TTT-TTTCEEEEE
T ss_pred EECCCCEEEEEECCCCcEEEEe-c-----ccCCCCccceecCCCC-EEEEEeCCCeEEEEEeC----Ccc-ccCCEEEEE
Confidence 7899999999998778999974 1 22222211 2222333 47899999999999993 599 999999999
Q ss_pred Eec
Q 042860 111 VSA 113 (235)
Q Consensus 111 V~~ 113 (235)
|..
T Consensus 92 V~~ 94 (123)
T 1pmy_A 92 VGD 94 (123)
T ss_dssp ESS
T ss_pred EcC
Confidence 975
No 11
>2aan_A Auracyanin A; cupredoxin fold, electron transport; 1.85A {Chloroflexus aurantiacus}
Probab=98.88 E-value=1.6e-08 Score=80.48 Aligned_cols=94 Identities=16% Similarity=0.193 Sum_probs=64.0
Q ss_pred ccceEEEecC-CCCCCC--C--ceeeCCEEEEEecCC----CCceEEecCc-----------------ccccccCCCCc-
Q 042860 15 AQSATIFVDG-ISEWKN--P--SVHVGDTIIFKHKFN----NSNLYIFKNK-----------------NAFNLCNFSQA- 67 (235)
Q Consensus 15 a~A~~~~VGg-~~GW~~--p--tF~VGDtLvF~y~~~----~HsVv~V~~~-----------------~~Y~~Cn~s~p- 67 (235)
++..++.||. ..++.+ + ++++||++.|+|.+. .|+++..... .+|..|...+.
T Consensus 16 ~~~~~V~v~~~~~~~~F~p~~i~v~~G~~V~~~~~N~~~~~~H~~~i~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~ 95 (139)
T 2aan_A 16 SGPVTIEIGSKGEELAFDKTELTVSAGQTVTIRFKNNSAVQQHNWILVKGGEAEAANIANAGLSAGPAANYLPADKSNII 95 (139)
T ss_dssp -CCEEEEEEBCTTSSSBSCSEEEECTTCEEEEEEECCCSSCCBCCEEESSCHHHHHHHHHHHHHHCGGGTTCCSCCTTEE
T ss_pred CcCEEEEEEecCCccEEcCCeEEECCCCEEEEEEEeCCCCCCeeEEEeccccccchhhhhhhhcccccccccCccccccc
Confidence 3445777852 235554 2 789999999888653 6999986221 14666653321
Q ss_pred ---ccccCCCCcceEEEcCCceeEEEEEcCCCCCccccCCceeEEEEe
Q 042860 68 ---TLLTNPNSTSYTWHPSRPGFFYFTFNNGSLQTCNKSSQKLSIKVS 112 (235)
Q Consensus 68 ---~~~s~g~st~~~v~L~~~G~~YFiCssg~~~HC~~~GqKl~I~V~ 112 (235)
..+..|.+..++|+++++|.|+|+|. ..+|| + ||+..|+|.
T Consensus 96 ~~t~~l~pGet~~v~f~~~~pG~y~f~C~--~~~H~-~-GM~G~i~V~ 139 (139)
T 2aan_A 96 AESPLANGNETVEVTFTAPAAGTYLYICT--VPGHY-P-LMQGKLVVN 139 (139)
T ss_dssp EECCCBCTTCEEEEEEECCSSEEEEEECC--STTTT-T-TSEEEEEEC
T ss_pred ccccccCCCCEEEEEEECCCCeEEEEEcC--CCChH-H-cCEEEEEEC
Confidence 23455555456777779999999994 88999 8 999999984
No 12
>1iuz_A Plastocyanin; electron transport; 1.60A {Ulva pertusa} SCOP: b.6.1.1 PDB: 7pcy_A
Probab=98.83 E-value=8e-09 Score=77.52 Aligned_cols=87 Identities=18% Similarity=0.213 Sum_probs=59.2
Q ss_pred eEEEecCC-CCCCC-C---ceeeCCEEEEEecC-CCCceEEecCc---ccccccCCCCc-ccccCCCCcceEEEcCCcee
Q 042860 18 ATIFVDGI-SEWKN-P---SVHVGDTIIFKHKF-NNSNLYIFKNK---NAFNLCNFSQA-TLLTNPNSTSYTWHPSRPGF 87 (235)
Q Consensus 18 ~~~~VGg~-~GW~~-p---tF~VGDtLvF~y~~-~~HsVv~V~~~---~~Y~~Cn~s~p-~~~s~g~st~~~v~L~~~G~ 87 (235)
.++.+|++ .++.+ | ++++||+|.|.+.. ..|||... +. ++++.+..... ..+..|. +++++++++|.
T Consensus 2 ~~V~m~~~~~~~~F~P~~i~v~~GdtV~~~n~~~~~H~v~~~-~~~~p~g~~~~~~~~~~~~~~~g~--~~~~tf~~~G~ 78 (98)
T 1iuz_A 2 QIVKLGGDDGSLAFVPSKISVAAGEAIEFVNNAGFPHNIVFD-EDAVPAGVDADAISYDDYLNSKGE--TVVRKLSTPGV 78 (98)
T ss_dssp EEEEESCTTSCCSEESSEEEECTTCEEEEEECSSCCEEEEEC-TTSSCTTCCHHHHCEEEEECSTTC--EEEEECCSCEE
T ss_pred EEEEEecCCCCcEEeCCEEEECCCCEEEEEECCCCCEEEEEe-CCCCccccccccccccccccCCCC--EEEEEcCCCEE
Confidence 46677653 34553 2 78999999999876 37999874 21 12333322221 1244443 36788899999
Q ss_pred EEEEEcCCCCCccccCCceeEEEEe
Q 042860 88 FYFTFNNGSLQTCNKSSQKLSIKVS 112 (235)
Q Consensus 88 ~YFiCssg~~~HC~~~GqKl~I~V~ 112 (235)
|+|+|+ -|| ++||+..|.|.
T Consensus 79 y~y~C~----~H~-~~gM~G~I~V~ 98 (98)
T 1iuz_A 79 YGVYCE----PHA-GAGMKMTITVQ 98 (98)
T ss_dssp EEEECT----TTG-GGTCEEEEEEC
T ss_pred EEEEch----hhc-cCCCEEEEEEC
Confidence 999993 399 99999999984
No 13
>1plc_A Plastocyanin; electron transport; 1.33A {Populus nigra} SCOP: b.6.1.1 PDB: 1pnc_A 1pnd_A 1tkw_A* 2pcy_A 3pcy_A 4pcy_A 5pcy_A 6pcy_A 1jxg_A 1ag6_A 1ylb_B 2pcf_A* 1oow_A 1tef_A 9pcy_A 1teg_A 1byo_A
Probab=98.82 E-value=9.8e-09 Score=76.76 Aligned_cols=86 Identities=14% Similarity=0.228 Sum_probs=58.0
Q ss_pred EEEecCC-CCCCC-C---ceeeCCEEEEEecCC-CCceEEecCcc---cccccCC---CCcccccCCCCcceEEEcCCce
Q 042860 19 TIFVDGI-SEWKN-P---SVHVGDTIIFKHKFN-NSNLYIFKNKN---AFNLCNF---SQATLLTNPNSTSYTWHPSRPG 86 (235)
Q Consensus 19 ~~~VGg~-~GW~~-p---tF~VGDtLvF~y~~~-~HsVv~V~~~~---~Y~~Cn~---s~p~~~s~g~st~~~v~L~~~G 86 (235)
++.||++ .++.+ | ++++||+|.|++... .|||... +.. +.+.+.. .....+..|. +++++++++|
T Consensus 2 ~v~m~~~~~~~~F~P~~i~v~~G~tV~~~n~~~~~H~v~~~-~~~~p~~~~~~~~~~~~~~~~~~~G~--~~~~tf~~~G 78 (99)
T 1plc_A 2 DVLLGADDGSLAFVPSEFSISPGEKIVFKNNAGFPHNIVFD-EDSIPSGVDASKISMSEEDLLNAKGE--TFEVALSNKG 78 (99)
T ss_dssp EEEESCTTCCSCEESSEEEECTTCEEEEEECSSCCBCCEEC-TTSSCTTCCHHHHCCCTTCCBCSTTC--EEEEECCSCE
T ss_pred EEEEecCCCcceEeCCEEEECCCCEEEEEECCCCceEEEEe-CCCCcccccccccccccCccccCCCC--EEEEEECCCc
Confidence 5677754 34543 2 789999999988764 6999974 321 1222211 1112344443 3678899999
Q ss_pred eEEEEEcCCCCCccccCCceeEEEEe
Q 042860 87 FFYFTFNNGSLQTCNKSSQKLSIKVS 112 (235)
Q Consensus 87 ~~YFiCssg~~~HC~~~GqKl~I~V~ 112 (235)
.|+|+|+ .|| ++||+..|+|.
T Consensus 79 ~y~~~C~----~H~-~~gM~G~i~V~ 99 (99)
T 1plc_A 79 EYSFYCS----PHQ-GAGMVGKVTVN 99 (99)
T ss_dssp EEEEECG----GGT-TTTCEEEEEEC
T ss_pred eEEEEcC----CCc-ccCCEEEEEEC
Confidence 9999993 799 99999999984
No 14
>3ef4_A Pseudoazurin, blue copper protein; electron transfer, electron transport; HET: PO4; 1.18A {Hyphomicrobium denitrificans} SCOP: b.6.1.0
Probab=98.78 E-value=2.5e-08 Score=79.73 Aligned_cols=79 Identities=11% Similarity=0.123 Sum_probs=57.0
Q ss_pred cCCCC--CCC-C---ceeeCCEEEEEecCCCCceEEecCcccccccCCCCcc-cccCCCCcceEEEcCCceeEEEEEcCC
Q 042860 23 DGISE--WKN-P---SVHVGDTIIFKHKFNNSNLYIFKNKNAFNLCNFSQAT-LLTNPNSTSYTWHPSRPGFFYFTFNNG 95 (235)
Q Consensus 23 Gg~~G--W~~-p---tF~VGDtLvF~y~~~~HsVv~V~~~~~Y~~Cn~s~p~-~~s~g~st~~~v~L~~~G~~YFiCssg 95 (235)
+|+.| +.+ | ++++||+|.|.+....|||... +. +...... +....+. +|+++++++|.|.|+|
T Consensus 10 ~g~~G~~~~F~P~~i~V~~GDTV~f~n~~~~Hnv~~~-~~-----~~p~g~~~~~~~pg~-t~s~TF~~~G~y~Y~C--- 79 (124)
T 3ef4_A 10 KDDAGNTMVFQPGFVKVEAGDTVKFVPTDKSHNAESV-RE-----VWPEGVAPVKGGFSK-EVVFNAEKEGLYVLKC--- 79 (124)
T ss_dssp ECTTSCEEEEESSEEEECTTCEEEEECSSSSCCCEEC-TT-----TSCTTSCCCBCCTTC-CEEEECCSSEEEEEEC---
T ss_pred cCCCCceeEEeCCEEEECCCCEEEEEECCCCccEEEe-CC-----cCCCCccccccCCCC-EEEEEeCCCeEEEEEc---
Confidence 44454 554 3 7999999999998878999973 21 2222222 2222232 4889999999999999
Q ss_pred CCCccccCCceeEEEEec
Q 042860 96 SLQTCNKSSQKLSIKVSA 113 (235)
Q Consensus 96 ~~~HC~~~GqKl~I~V~~ 113 (235)
..|| .+||+..|+|..
T Consensus 80 -~~H~-~~GM~G~I~V~~ 95 (124)
T 3ef4_A 80 -APHY-GMGMVVLVQVGK 95 (124)
T ss_dssp -TTTG-GGTCEEEEEESS
T ss_pred -CCCC-cCCCEEEEEECC
Confidence 4899 999999999965
No 15
>2gim_A Plastocyanin; beta sheet, Cu, helix, electron transport; 1.60A {Anabaena variabilis} SCOP: b.6.1.1 PDB: 1fa4_A 1nin_A 1tu2_A* 2cj3_A
Probab=98.77 E-value=4.7e-08 Score=73.61 Aligned_cols=87 Identities=16% Similarity=0.080 Sum_probs=57.5
Q ss_pred eEEEecCC-CCCCC-C---ceeeCCEEEEEecC-CCCceEEecCcccc-----cccCCC-CcccccCCCCcceEEEc---
Q 042860 18 ATIFVDGI-SEWKN-P---SVHVGDTIIFKHKF-NNSNLYIFKNKNAF-----NLCNFS-QATLLTNPNSTSYTWHP--- 82 (235)
Q Consensus 18 ~~~~VGg~-~GW~~-p---tF~VGDtLvF~y~~-~~HsVv~V~~~~~Y-----~~Cn~s-~p~~~s~g~st~~~v~L--- 82 (235)
.++.||.+ .+|.+ | ++++||+|.|++.. ..|++... +.... +..... +...+..|.+ +++++
T Consensus 4 ~~V~~~~~~~~~~F~P~~i~v~~Gd~V~~~n~~~~~H~~~~~-~~~~~~~~g~~~~~~~~~~~~~~pG~~--~~~~f~~~ 80 (106)
T 2gim_A 4 YTVKLGSDKGLLVFEPAKLTIKPGDTVEFLNNKVPPHNVVFD-AALNPAKSADLAKSLSHKQLLMSPGQS--TSTTFPAD 80 (106)
T ss_dssp EEEEESCTTCCSSEESSEEEECTTCEEEEEECSSSCCCBEEC-SSSSTTCCHHHHHHHCBCSCCCSTTCE--EEEECCTT
T ss_pred EEEEEEecCCcceEcCCEEEECCCCEEEEEECCCCCceEEEe-CCCCcccccccchhccccceeeCCCCE--EEEEEecC
Confidence 35677753 45664 2 78999999999775 46999974 22111 000000 1122444433 56777
Q ss_pred CCceeEEEEEcCCCCCccccCCceeEEEEe
Q 042860 83 SRPGFFYFTFNNGSLQTCNKSSQKLSIKVS 112 (235)
Q Consensus 83 ~~~G~~YFiCssg~~~HC~~~GqKl~I~V~ 112 (235)
+++|.|+|+|. .|| ++||+..|+|.
T Consensus 81 ~~~G~y~y~C~----~H~-~~GM~G~i~V~ 105 (106)
T 2gim_A 81 APAGEYTFYCE----PHR-GAGMVGKITVA 105 (106)
T ss_dssp CCSEEEEEECT----TTG-GGTCEEEEEEC
T ss_pred CCCceEEEEeC----Chh-hcCcEEEEEEc
Confidence 89999999992 899 99999999995
No 16
>3erx_A Pseudoazurin; copper protein, high-resolution, E transport, metal-binding, transport; 1.25A {Paracoccus pantotrophus} SCOP: b.6.1.1 PDB: 1adw_A
Probab=98.72 E-value=2.9e-08 Score=79.00 Aligned_cols=70 Identities=17% Similarity=0.166 Sum_probs=52.4
Q ss_pred ceeeCCEEEEEecCCCCceEEecCcccccccCCCCcc-cccCCCCcceEEEcCCceeEEEEEcCCCCCccccCCceeEEE
Q 042860 32 SVHVGDTIIFKHKFNNSNLYIFKNKNAFNLCNFSQAT-LLTNPNSTSYTWHPSRPGFFYFTFNNGSLQTCNKSSQKLSIK 110 (235)
Q Consensus 32 tF~VGDtLvF~y~~~~HsVv~V~~~~~Y~~Cn~s~p~-~~s~g~st~~~v~L~~~G~~YFiCssg~~~HC~~~GqKl~I~ 110 (235)
++++||+|.|.+....|||... +. |...... +....+ .+|+++++++|.|+|+| ..|| .+||+..|+
T Consensus 24 ~V~~GdtV~f~~~~~~H~v~~~-~~-----~~P~g~~~f~~~pg-~t~s~TF~~pG~y~y~C----~~H~-~~GM~G~I~ 91 (123)
T 3erx_A 24 RAEPGDVINFVPTDKSHNVEAI-KE-----ILPEGVESFKSKIN-ESYTLTVTEPGLYGVKC----TPHF-GMGMVGLVQ 91 (123)
T ss_dssp EECTTEEEEEEESSTTCCCEEC-TT-----SSCTTCCCCBCCTT-CCEEEEECSCEEEEEEC----GGGT-TTTCEEEEE
T ss_pred EECCCCEEEEEECCCCceEEEc-CC-----cCCCCccceecCCC-CEEEEEeCCCeEEEEEe----CCCC-cCCcEEEEE
Confidence 7999999999998777999863 21 2222221 222223 34889999999999999 3899 999999999
Q ss_pred Eec
Q 042860 111 VSA 113 (235)
Q Consensus 111 V~~ 113 (235)
|..
T Consensus 92 V~~ 94 (123)
T 3erx_A 92 VGD 94 (123)
T ss_dssp ESS
T ss_pred ECC
Confidence 975
No 17
>3tu6_A Pseudoazurin (blue copper protein); cupredoxins, beta barrel, electron transfer, redox, electron transport; 2.00A {Sinorhizobium meliloti}
Probab=98.72 E-value=3.4e-08 Score=79.10 Aligned_cols=70 Identities=20% Similarity=0.188 Sum_probs=52.2
Q ss_pred ceeeCCEEEEEecCCCCceEEecCcccccccCCCCcc-cccCCCCcceEEEcCCceeEEEEEcCCCCCccccCCceeEEE
Q 042860 32 SVHVGDTIIFKHKFNNSNLYIFKNKNAFNLCNFSQAT-LLTNPNSTSYTWHPSRPGFFYFTFNNGSLQTCNKSSQKLSIK 110 (235)
Q Consensus 32 tF~VGDtLvF~y~~~~HsVv~V~~~~~Y~~Cn~s~p~-~~s~g~st~~~v~L~~~G~~YFiCssg~~~HC~~~GqKl~I~ 110 (235)
++++||+|.|.+....|||... +. +...... +....+. +++++++++|.|+|+|+ .|| ..||+..|.
T Consensus 26 ~V~~GDtVtf~n~~~~H~v~~~-~~-----~~P~g~~~f~s~pGe-t~s~TF~~pG~y~y~C~----~H~-~~GM~G~I~ 93 (127)
T 3tu6_A 26 RAQPGDTVTFVAKDKGHNSALM-KG-----GAPEGAETWKGKINE-EITVTLSKPGVYMYQCA----PHV-GMGMIGAIV 93 (127)
T ss_dssp EECTTCEEEEECSSSSCCCEEC-TT-----CSCTTCCCCBCCTTC-CCEEECCSCEEEEEECT----TTG-GGTCEEEEE
T ss_pred EECCCCEEEEEECCCCceEEEc-cC-----cCCCCccceecCCCC-EEEEEeCCCeEEEEEeC----CCC-cCCcEEEEE
Confidence 7999999999998777999874 21 1111111 2222232 47899999999999993 799 999999999
Q ss_pred Eec
Q 042860 111 VSA 113 (235)
Q Consensus 111 V~~ 113 (235)
|..
T Consensus 94 V~~ 96 (127)
T 3tu6_A 94 VGE 96 (127)
T ss_dssp ESS
T ss_pred ECc
Confidence 976
No 18
>1kdj_A Plastocyanin; electron transfer, photosystem, PAI-PAI stacking; 1.70A {Adiantum capillus-veneris} SCOP: b.6.1.1 PDB: 1kdi_A 2bz7_A 2bzc_A
Probab=98.70 E-value=5.8e-08 Score=72.73 Aligned_cols=86 Identities=16% Similarity=0.130 Sum_probs=58.1
Q ss_pred EEEecCC-CCCCC--C--ceeeCCEEEEEecC-CCCceEEecCccccc----ccCCC-----CcccccCCCCcceEEEcC
Q 042860 19 TIFVDGI-SEWKN--P--SVHVGDTIIFKHKF-NNSNLYIFKNKNAFN----LCNFS-----QATLLTNPNSTSYTWHPS 83 (235)
Q Consensus 19 ~~~VGg~-~GW~~--p--tF~VGDtLvF~y~~-~~HsVv~V~~~~~Y~----~Cn~s-----~p~~~s~g~st~~~v~L~ 83 (235)
++.||.+ .++.+ + ++++||+|.|++.. ..||++.. +...++ .|+.. +...+..|. +++++++
T Consensus 2 ~V~~g~~~~~~~F~P~~i~v~~G~tV~~~n~~~~~H~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~pG~--~~~~tf~ 78 (102)
T 1kdj_A 2 KVEVGDEVGNFKFYPDSITVSAGEAVEFTLVGETGHNIVFD-IPAGAPGTVASELKAASMDENDLLSEDEP--SFKAKVS 78 (102)
T ss_dssp EEEESCTTCCCCEESSEEEECTTCCEEEEECSSSCBCCEEC-CCTTCCHHHHHHHHHTSCCTTCCBBTTBC--EEEECCC
T ss_pred EEEEecCCCccEEeCCEEEECCCCEEEEEECCCCCeEEEEe-CcccccccccchhhcccccccceecCCCC--EEEEEeC
Confidence 5677763 34543 2 78999999999765 46999974 322221 11110 112244443 3678889
Q ss_pred CceeEEEEEcCCCCCccccCCceeEEEEe
Q 042860 84 RPGFFYFTFNNGSLQTCNKSSQKLSIKVS 112 (235)
Q Consensus 84 ~~G~~YFiCssg~~~HC~~~GqKl~I~V~ 112 (235)
++|.|+|+| ..|| ++||+..|.|.
T Consensus 79 ~~G~y~y~C----~~H~-~~gM~G~i~V~ 102 (102)
T 1kdj_A 79 TPGTYTFYC----TPHK-SANMKGTLTVK 102 (102)
T ss_dssp SCEEEEEEC----STTG-GGTCEEEEEEC
T ss_pred CCeEEEEEe----CCCc-ccCCeEEEEEC
Confidence 999999999 2999 99999999984
No 19
>2plt_A Plastocyanin; electron transport; 1.50A {Chlamydomonas reinhardtii} SCOP: b.6.1.1
Probab=98.69 E-value=3.7e-08 Score=73.16 Aligned_cols=87 Identities=16% Similarity=0.180 Sum_probs=58.4
Q ss_pred eEEEecCC-CCCCC-C---ceeeCCEEEEEecCC-CCceEEecCc---ccccccCCCC-cccccCCCCcceEEEcCCcee
Q 042860 18 ATIFVDGI-SEWKN-P---SVHVGDTIIFKHKFN-NSNLYIFKNK---NAFNLCNFSQ-ATLLTNPNSTSYTWHPSRPGF 87 (235)
Q Consensus 18 ~~~~VGg~-~GW~~-p---tF~VGDtLvF~y~~~-~HsVv~V~~~---~~Y~~Cn~s~-p~~~s~g~st~~~v~L~~~G~ 87 (235)
.++.+|++ .++.+ | ++++||+|.|++... .||+... +. .+++.+.... ...+..|. +++++++++|.
T Consensus 2 ~~V~m~~~~~~~~F~P~~i~v~~G~~V~~~n~~~~~H~~~~~-~~~~p~~~~~~~~~~~~~~~~pG~--~~~~tf~~~G~ 78 (98)
T 2plt_A 2 ATVKLGADSGALEFVPKTLTIKSGETVNFVNNAGFPHNIVFD-EDAIPSGVNADAISRDDYLNAPGE--TYSVKLTAAGE 78 (98)
T ss_dssp EEEEESCTTCCSSEESSEEEECTTCEEEEEECSSCCEEEEEC-GGGSCTTCCHHHHCEEEEECSTTC--EEEEECCSCEE
T ss_pred EEEEEecCCCCceEeCCEEEECCCCEEEEEECCCCceEEEEe-CCCCCCccccccccccceecCCCC--EEEEEeCCCeE
Confidence 46778754 34543 2 789999999988763 6999874 21 1122221111 12344443 36788899999
Q ss_pred EEEEEcCCCCCccccCCceeEEEEe
Q 042860 88 FYFTFNNGSLQTCNKSSQKLSIKVS 112 (235)
Q Consensus 88 ~YFiCssg~~~HC~~~GqKl~I~V~ 112 (235)
|+|+|+ .|| ++||+..|+|.
T Consensus 79 y~y~C~----~H~-~~gM~G~i~V~ 98 (98)
T 2plt_A 79 YGYYCE----PHQ-GAGMVGKIIVQ 98 (98)
T ss_dssp EEEECG----GGG-GGTCEEEEEEC
T ss_pred EEEEcC----Ccc-ccCCeEEEEEC
Confidence 999993 799 99999999984
No 20
>1byp_A Protein (plastocyanin); electron transfer, photosynthesis, acidic patch, double mutant, electron transport; 1.75A {Silene latifolia subsp} SCOP: b.6.1.1 PDB: 1pla_A 1plb_A
Probab=98.69 E-value=3.4e-08 Score=73.62 Aligned_cols=86 Identities=15% Similarity=0.227 Sum_probs=57.8
Q ss_pred EEEecCC-CCCCC-C---ceeeCCEEEEEecCC-CCceEEecCc---ccccccCC---CCcccccCCCCcceEEEcCCce
Q 042860 19 TIFVDGI-SEWKN-P---SVHVGDTIIFKHKFN-NSNLYIFKNK---NAFNLCNF---SQATLLTNPNSTSYTWHPSRPG 86 (235)
Q Consensus 19 ~~~VGg~-~GW~~-p---tF~VGDtLvF~y~~~-~HsVv~V~~~---~~Y~~Cn~---s~p~~~s~g~st~~~v~L~~~G 86 (235)
++.||++ .++.+ | ++++||+|.|++... .||+... +. +.++.+.. .+...+..|. +++++++++|
T Consensus 2 ~V~~~~~~~~~~F~P~~i~v~~G~tV~~~n~~~~~H~~~~~-~~~~p~g~~~~~~~~~~~~~~~~~G~--~~~~~f~~~G 78 (99)
T 1byp_A 2 EVLLGSSDGGLAFVPSDLSIASGEKITFKNNAGFPHNDLFD-KKEVPAGVDVTKISMPEEDLLNAPGE--EYSVTLTEKG 78 (99)
T ss_dssp EEEESCTTSCCSEESSEEEECTTEEEEEEECSSCCBCCEEC-TTSSCTTCCHHHHSCCTTCCBCSTTC--EEEEEECSCE
T ss_pred EEEEecCCCcceEeCCEEEECCCCEEEEEECCCCcceEEEe-CCCCccccccccccccccceeeCCCC--EEEEEeCCCc
Confidence 5677753 44543 2 789999999998763 6999874 22 11222211 1112344443 3678889999
Q ss_pred eEEEEEcCCCCCccccCCceeEEEEe
Q 042860 87 FFYFTFNNGSLQTCNKSSQKLSIKVS 112 (235)
Q Consensus 87 ~~YFiCssg~~~HC~~~GqKl~I~V~ 112 (235)
.|+|+|+ .|| ++||+..|+|.
T Consensus 79 ~y~~~C~----~H~-~~gM~G~i~V~ 99 (99)
T 1byp_A 79 TYKFYCA----PHA-GAGMVGKVTVN 99 (99)
T ss_dssp EEEEECG----GGT-TTTCEEEEEEC
T ss_pred EEEEEcC----Ccc-ccCCEEEEEEC
Confidence 9999993 899 99999999984
No 21
>1b3i_A PETE protein, protein (plastocyanin); electron transport, type I copper protein, photosynthesis; NMR {Prochlorothrix hollandica} SCOP: b.6.1.1 PDB: 2b3i_A 2jxm_A*
Probab=98.63 E-value=1.1e-07 Score=70.62 Aligned_cols=85 Identities=16% Similarity=0.077 Sum_probs=57.0
Q ss_pred EEEecCC-CCCCC--C--ceeeCCEEEEEecC-CCCceEEecCccc---ccccCCCCcccccCCCCcceEEEcCCceeEE
Q 042860 19 TIFVDGI-SEWKN--P--SVHVGDTIIFKHKF-NNSNLYIFKNKNA---FNLCNFSQATLLTNPNSTSYTWHPSRPGFFY 89 (235)
Q Consensus 19 ~~~VGg~-~GW~~--p--tF~VGDtLvF~y~~-~~HsVv~V~~~~~---Y~~Cn~s~p~~~s~g~st~~~v~L~~~G~~Y 89 (235)
++.||++ .++.+ . ++++||+|.|.+.. ..|++... +... .+.+.. +...+..|.+ ++++++++|.|+
T Consensus 4 ~V~~~~~~~~~~F~P~~i~v~~G~~V~~~n~~~~~H~~~~~-~~~~~~~~~~~~~-~~~~~~~g~~--~~~tf~~~G~y~ 79 (97)
T 1b3i_A 4 QIKMGTDKYAPLYEPKALSISAGDTVEFVMNKVGPHNVIFD-KVPAGESAPALSN-TKLAIAPGSF--YSVTLGTPGTYS 79 (97)
T ss_dssp EEEEEETTTEEEEESSEEEECTTCEEEEEECSSCCCCBEEE-ECCTTSCHHHHCB-CCCCCSCSCC--EEEECCSCSEEE
T ss_pred EEEEeccCCccEEeCCEEEECCCCEEEEEECCCCCeEEEEe-CCCCccccccccc-cceecCCCCE--EEEEeCCCeEEE
Confidence 5667643 44443 2 78999999999875 36999975 2211 111111 1123444443 678889999999
Q ss_pred EEEcCCCCCccccCCceeEEEEe
Q 042860 90 FTFNNGSLQTCNKSSQKLSIKVS 112 (235)
Q Consensus 90 FiCssg~~~HC~~~GqKl~I~V~ 112 (235)
|+| ..|| ++||+..|+|.
T Consensus 80 y~C----~~H~-~~gM~G~i~V~ 97 (97)
T 1b3i_A 80 FYC----TPHR-GAGMVGTITVE 97 (97)
T ss_dssp EEC----SSTT-TTTCEEEEEEC
T ss_pred EEc----cChh-hcCCEEEEEEC
Confidence 999 2899 99999999984
No 22
>1pcs_A Plastocyanin; electron transport; 2.15A {Synechocystis SP} SCOP: b.6.1.1 PDB: 1m9w_A 1j5c_A 1j5d_A 1jxd_A 1jxf_A
Probab=98.51 E-value=4.2e-07 Score=67.50 Aligned_cols=87 Identities=14% Similarity=0.189 Sum_probs=57.0
Q ss_pred eEEEecCC-CCCCC-C---ceeeCCEEEEEecC-CCCceEEecCccc--ccccCCCC-cccccCCCCcceEEEcCCceeE
Q 042860 18 ATIFVDGI-SEWKN-P---SVHVGDTIIFKHKF-NNSNLYIFKNKNA--FNLCNFSQ-ATLLTNPNSTSYTWHPSRPGFF 88 (235)
Q Consensus 18 ~~~~VGg~-~GW~~-p---tF~VGDtLvF~y~~-~~HsVv~V~~~~~--Y~~Cn~s~-p~~~s~g~st~~~v~L~~~G~~ 88 (235)
.++.+|.+ .++.+ | ++++||+|.|++.. ..|++... +... .+..+... ...+..|. +++++++++|.|
T Consensus 3 ~~V~~~~~~~~~~F~P~~i~v~~G~~V~~~n~~~~~H~~~~~-~~~~pg~~~~~~~~~~~~~~pG~--~~~~tf~~~G~y 79 (98)
T 1pcs_A 3 ATVKMGSDSGALVFEPSTVTIKAGEEVKWVNNKLSPHNIVFD-ADGVPADTAAKLSHKGLLFAAGE--SFTSTFTEPGTY 79 (98)
T ss_dssp EEEEESCTTSCSSEESSEEEECTTCEEEEEECSSCCEEEEEC-CSSSCHHHHHHHCEEEEECSTTC--EEEEECCSCEEE
T ss_pred EEEEEecCCCccEEeCCEEEECCCCEEEEEECCCCCcEEEEe-CCCCCccccccccccccccCCCC--EEEEEcCCCeEE
Confidence 35677653 45543 2 78999999999765 46999874 2110 00011111 12244443 367888999999
Q ss_pred EEEEcCCCCCccccCCceeEEEEe
Q 042860 89 YFTFNNGSLQTCNKSSQKLSIKVS 112 (235)
Q Consensus 89 YFiCssg~~~HC~~~GqKl~I~V~ 112 (235)
+|+|+ .|| ++||+..|.|.
T Consensus 80 ~~~C~----~H~-~~gM~G~i~V~ 98 (98)
T 1pcs_A 80 TYYCE----PHR-GAGMVGKVVVE 98 (98)
T ss_dssp EEECG----GGT-TTTCEEEEEEC
T ss_pred EEEcC----Ccc-ccCCeEEEEEC
Confidence 99993 799 99999999984
No 23
>4hci_A Cupredoxin 1; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.63A {Bacillus anthracis} PDB: 4hcg_A 4hcf_A
Probab=98.47 E-value=9.8e-08 Score=71.87 Aligned_cols=84 Identities=12% Similarity=0.129 Sum_probs=53.7
Q ss_pred ccceEEEecCC-CCCCCC--ceeeCCEEEEEecC---CCCceEEecCcccccccCCCCcccccCCCCcceEEEcCCceeE
Q 042860 15 AQSATIFVDGI-SEWKNP--SVHVGDTIIFKHKF---NNSNLYIFKNKNAFNLCNFSQATLLTNPNSTSYTWHPSRPGFF 88 (235)
Q Consensus 15 a~A~~~~VGg~-~GW~~p--tF~VGDtLvF~y~~---~~HsVv~V~~~~~Y~~Cn~s~p~~~s~g~st~~~v~L~~~G~~ 88 (235)
+.++++.|--. ..+... ++++||++.|.+.+ ..|++.. .+... ...+..|.+..++|+++++|.|
T Consensus 11 a~~~~v~V~~~~~~F~P~~i~v~~G~tV~~~~~n~d~~~H~~~~--~~~~~-------~~~~~pg~~~~~~~t~~~~G~Y 81 (100)
T 4hci_A 11 ASAKVIEVELNDDYFNPNVITIPINESTTLLLKNKGKSEHTFTI--KKLGI-------DVVVESGKEKNITVKPKSAGTY 81 (100)
T ss_dssp ---CCEEEEEETTEEESSEEEECTTSCEEEEEEECSSSCEEEEE--GGGTE-------EEEECTTCEEEEEECCCSCEEE
T ss_pred CCCcEEEEEEECCEEeCCEEEECCCCEEEEEEEcCCCceEEEEE--ecCCc-------ceeecCCcceeEEEecccCceE
Confidence 44555555422 223322 79999999998753 2377764 22111 1224445445678888999999
Q ss_pred EEEEcCCCCCccccCCceeEEEEe
Q 042860 89 YFTFNNGSLQTCNKSSQKLSIKVS 112 (235)
Q Consensus 89 YFiCssg~~~HC~~~GqKl~I~V~ 112 (235)
.|+| ..|| +.||+..|.|.
T Consensus 82 ~y~C----~~H~-~~gM~G~i~Ve 100 (100)
T 4hci_A 82 ELIC----RYHL-LKGMEGKVIVK 100 (100)
T ss_dssp EEEC----TTTG-GGTCEEEEEEC
T ss_pred EEEC----cccc-CCCCEEEEEEC
Confidence 9999 3699 99999999984
No 24
>2ux6_A Pseudoazurin; type-1 copper, metal-binding, redox potential, copper, transport, cupredoxin, periplasmic, electron transport; 1.3A {Achromobacter cycloclastes} PDB: 2ux7_A 2uxf_A 2uxg_A 1bqk_A 1bqr_A 1zia_A 1zib_A 2jkw_A
Probab=98.15 E-value=5.2e-06 Score=65.56 Aligned_cols=68 Identities=18% Similarity=0.132 Sum_probs=48.7
Q ss_pred ceeeCCEEEEEecCCCCceEEecCcccccccCCCCcc-cccCCCCcceEEEcCCceeEEEEEcCCCCCccccCCceeEEE
Q 042860 32 SVHVGDTIIFKHKFNNSNLYIFKNKNAFNLCNFSQAT-LLTNPNSTSYTWHPSRPGFFYFTFNNGSLQTCNKSSQKLSIK 110 (235)
Q Consensus 32 tF~VGDtLvF~y~~~~HsVv~V~~~~~Y~~Cn~s~p~-~~s~g~st~~~v~L~~~G~~YFiCssg~~~HC~~~GqKl~I~ 110 (235)
++++||+|.|.+....|||+.. + .|-..... +....+. +++++++++|.|+|+|+ -|+ . |+..|.
T Consensus 24 ~V~~GdtV~f~n~d~~H~v~~~-~-----~~~p~~~~~~~~~~g~-t~~~tF~~~G~y~y~C~----~H~-~--M~G~I~ 89 (122)
T 2ux6_A 24 KVAPGDTVTFIPTDKGHNVETI-K-----GMIPDGAEAFKSKINE-NYKVTFTAPGVYGVKCT----PHP-F--MVGVVQ 89 (122)
T ss_dssp EECTTEEEEEEESSSSCCCEEC-T-----TCSCTTCCCCBCCTTC-CEEEEECSCEEEEEEET----TEE-E--EEEEEE
T ss_pred EECCCCEEEEEECCCCcEEEEc-c-----cccCCCcceeecCCCC-EEEEEeCCCEEEEEEeC----CCc-c--CEEEEE
Confidence 7899999999998767999974 2 12111111 2222232 47889999999999994 399 6 999999
Q ss_pred Eec
Q 042860 111 VSA 113 (235)
Q Consensus 111 V~~ 113 (235)
|..
T Consensus 90 V~~ 92 (122)
T 2ux6_A 90 VGD 92 (122)
T ss_dssp ESS
T ss_pred EeC
Confidence 975
No 25
>3cvb_A Plastocyanin; cupredoxin, SELF assembly, copper, electron transport, metal-binding, transport; 1.40A {Phormidium laminosum} PDB: 3cvc_A 3cvd_A 2w8c_A 2w88_A 2q5b_A 1baw_A 3bqv_A
Probab=98.10 E-value=9.1e-06 Score=60.53 Aligned_cols=85 Identities=15% Similarity=0.128 Sum_probs=54.9
Q ss_pred eEEEecCC-CCCCC--C--ceeeCCEEEEEecC-CCCceEEecCcccccccCC-------C-CcccccCCCCcceEEEc-
Q 042860 18 ATIFVDGI-SEWKN--P--SVHVGDTIIFKHKF-NNSNLYIFKNKNAFNLCNF-------S-QATLLTNPNSTSYTWHP- 82 (235)
Q Consensus 18 ~~~~VGg~-~GW~~--p--tF~VGDtLvF~y~~-~~HsVv~V~~~~~Y~~Cn~-------s-~p~~~s~g~st~~~v~L- 82 (235)
.++.||.+ .++.+ + ++++||+|.|++.. ..|++..- ...+ .+.. . +...+..|.+ +++++
T Consensus 3 ~~V~~~~~~~~~~f~p~~i~v~~Gd~V~~~N~~~~~H~v~~~--~~~~-~~~~g~~~~~~~~~~~~i~pG~~--~~~~f~ 77 (105)
T 3cvb_A 3 FTVKMGADSGLFQFEPANVTVHPGDTVKWVNNKLPPHNILFD--DKQV-PGASKELADKLSHSQLMFSPGES--YEITFS 77 (105)
T ss_dssp EEEEESCTTCCSCEESSEEEECTTEEEEEEECSSCCEEEEEC--TTSS-GGGCHHHHHHHCEEEEECSTTCE--EEEEEC
T ss_pred EEEEEeecCCccEEeCCEEEEcCCCEEEEEECCCCCCeEEEe--CCCC-CcccccccccccccccccCCCCe--EEEEEe
Confidence 35677753 45543 3 68999999998764 46999863 2111 1200 0 0112344443 45555
Q ss_pred --CCceeEEEEEcCCCCCccccCCceeEEEEe
Q 042860 83 --SRPGFFYFTFNNGSLQTCNKSSQKLSIKVS 112 (235)
Q Consensus 83 --~~~G~~YFiCssg~~~HC~~~GqKl~I~V~ 112 (235)
+++|.|+|.|. .|+ .+||+..|.|.
T Consensus 78 ~~~~~G~y~y~C~----~H~-~~GM~G~i~V~ 104 (105)
T 3cvb_A 78 SDFPAGTYTYYCA----PHR-GAGMVGKITVE 104 (105)
T ss_dssp TTSCSEEEEEECT----TTG-GGTCEEEEEEC
T ss_pred cCCCCeeEEEEeC----Cch-hcCCEEEEEEc
Confidence 79999999992 799 99999999985
No 26
>3ay2_A Lipid modified azurin protein; beta sandwich, bacterial protein, anticancer, anti-HIV/AIDS, antiparasitic activity, antitumor protein; 1.90A {Neisseria gonorrhoeae}
Probab=98.07 E-value=1.5e-05 Score=66.72 Aligned_cols=91 Identities=12% Similarity=0.106 Sum_probs=55.9
Q ss_pred ceEEEecCCCCCCC--Cc--e-eeCCEEEEEe--cCCC------CceEEecCccccc---------------ccCCCC--
Q 042860 17 SATIFVDGISEWKN--PS--V-HVGDTIIFKH--KFNN------SNLYIFKNKNAFN---------------LCNFSQ-- 66 (235)
Q Consensus 17 A~~~~VGg~~GW~~--pt--F-~VGDtLvF~y--~~~~------HsVv~V~~~~~Y~---------------~Cn~s~-- 66 (235)
..++.|+.+.++.+ .+ + +.||.+.|.+ .... ||++.. +..+++ .=+..+
T Consensus 42 ~~~V~I~~~d~m~F~P~~itV~kaG~~Vtv~~~N~g~~p~~~m~Hn~vi~-~~~~~~~v~~~~m~~~~~~~v~~~d~~vl 120 (167)
T 3ay2_A 42 NCAATVESNDNMQFNTKDIQVSKACKEFTITLKHTGTQPKASMGHNLVIA-KAEDMDGVFKDGVGAADTDYVKPDDARVV 120 (167)
T ss_dssp CCEEEEEECTTSCBSCSEEEEETTCSSEEEEEEECSCSCHHHHCBCCEEE-EGGGHHHHHHHHGGGGGGTTSCTTCTTEE
T ss_pred ceEEEEEeCCCceEecceEEEecCCCEEEEEEEECCCCccccccceEEec-cCcchhhhHHHhhhccccccccccccchh
Confidence 34677775556554 34 4 5699765555 3332 999985 333221 101111
Q ss_pred --cccccCCCCcceEEEcC--CceeEEEEEcCCCCCccccCCceeEEEEe
Q 042860 67 --ATLLTNPNSTSYTWHPS--RPGFFYFTFNNGSLQTCNKSSQKLSIKVS 112 (235)
Q Consensus 67 --p~~~s~g~st~~~v~L~--~~G~~YFiCssg~~~HC~~~GqKl~I~V~ 112 (235)
..++..|.+.+++|++. ++|.|+|+|+ ..+|= + |||..|+|.
T Consensus 121 ~~t~~l~pGet~svtf~~~~lkpG~Y~f~Ct--~PgH~-~-gM~G~i~V~ 166 (167)
T 3ay2_A 121 AHTKLIGGGEESSLTLDPAKLADGDYKFACT--FPGHG-A-LMNGKVTLV 166 (167)
T ss_dssp EECCCBCTTCEEEEEECGGGGTTSCEEEECC--STTGG-G-TSEEEEEEE
T ss_pred ccceeeCCCCEEEEEEecCCCCCcEEEEEcC--CCCch-h-cCEEEEEEe
Confidence 11344455445566655 8999999994 88998 6 999999996
No 27
>1cuo_A Protein (azurin ISO-2); beta barrel, periplasmic, electron transport; 1.60A {Methylomonas SP} SCOP: b.6.1.1 PDB: 1uat_A
Probab=98.01 E-value=3.1e-05 Score=61.84 Aligned_cols=90 Identities=10% Similarity=0.079 Sum_probs=56.7
Q ss_pred eEEEecCCCCCCC--C--ceeeC-CEEEEEecC--C------CCceEEecCccc----------------ccccCCCC--
Q 042860 18 ATIFVDGISEWKN--P--SVHVG-DTIIFKHKF--N------NSNLYIFKNKNA----------------FNLCNFSQ-- 66 (235)
Q Consensus 18 ~~~~VGg~~GW~~--p--tF~VG-DtLvF~y~~--~------~HsVv~V~~~~~----------------Y~~Cn~s~-- 66 (235)
-++.|+....+.+ . +++.| |.+.|.+.+ . .||++.. +..+ |..=+..+
T Consensus 3 ~~v~i~~~d~m~F~p~~i~V~~G~~~vtv~~~N~g~~~~~~m~H~~vi~-~~~~~~~~~~~~m~~~~~~~~v~~~~~~~~ 81 (129)
T 1cuo_A 3 CETTVTSGDTMTYSTRSISVPASCAEFTVNFEHKGHMPKTGMGHNWVLA-KSADVGDVAKEGAHAGADNNFVTPGDKRVI 81 (129)
T ss_dssp CEEEEEECSSSCCSCSEEEEETTCSEEEEEEEECSSSCHHHHCBCCEEE-EGGGHHHHHHHHHTTCGGGTTSCTTCTTCS
T ss_pred EEEEEEeCCCceEccCeEEEcCCCeEEEEEEEECCCCcccccccceEEe-cCcchhhhHHHhhhccccccccccccccce
Confidence 3555665455554 2 67889 966665543 2 3999985 3322 21101111
Q ss_pred --cccccCCCCcceEEEcC---CceeEEEEEcCCCCCccccCCceeEEEEe
Q 042860 67 --ATLLTNPNSTSYTWHPS---RPGFFYFTFNNGSLQTCNKSSQKLSIKVS 112 (235)
Q Consensus 67 --p~~~s~g~st~~~v~L~---~~G~~YFiCssg~~~HC~~~GqKl~I~V~ 112 (235)
..++..|.+.+++|+++ ++|.|+|+|+ ..+|= + |||-.|+|.
T Consensus 82 ~~t~~l~pGet~svtf~~~~~~~~G~Y~f~C~--~pgH~-~-~M~G~i~V~ 128 (129)
T 1cuo_A 82 AFTPIIGGGEKTSVKFKVSALSKDEAYTYFCS--YPGHF-S-MMRGTLKLE 128 (129)
T ss_dssp EECCCBCTTCEEEEEEEGGGCCTTSCEEEECC--STTCT-T-TSEEEEEEE
T ss_pred eeeeEECCCCEEEEEEeccccCCCceEEEEeC--CCCch-H-cCEEEEEEe
Confidence 11355555556777765 8999999994 78997 6 999999985
No 28
>2ccw_A Azurin II, AZN-2; electron transport (cuproprotein), alcaligenes xylosoxidans, electron transfer, cupredoxin, electron transport; 1.13A {Alcaligenes xylosoxydans} SCOP: b.6.1.1 PDB: 1dz0_A 1dyz_A 1aiz_A 1azb_A 1azc_A 1uri_A 2aza_A 1a4a_A 1a4b_A 1a4c_A
Probab=97.88 E-value=8.3e-05 Score=59.37 Aligned_cols=90 Identities=13% Similarity=0.111 Sum_probs=55.0
Q ss_pred eEEEecCCCCCCC--Cceee---CCEEEEEec--CCC------CceEEecCcc----------------cccccCCCC--
Q 042860 18 ATIFVDGISEWKN--PSVHV---GDTIIFKHK--FNN------SNLYIFKNKN----------------AFNLCNFSQ-- 66 (235)
Q Consensus 18 ~~~~VGg~~GW~~--ptF~V---GDtLvF~y~--~~~------HsVv~V~~~~----------------~Y~~Cn~s~-- 66 (235)
-++.|+.+.++.+ .+|.| ||.+.|.+. ... ||++.. +.. +|..=+-.+
T Consensus 3 ~~v~v~~~d~m~F~p~~i~V~k~G~~vtv~~~N~g~~p~~~m~H~~vi~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (129)
T 2ccw_A 3 CEATVESNDAMQYNVKEIVVDKSCKQFTMHLKHVGKMAKVAMGHNLVLT-KDADKQAVATDGMGAGLAQDYVKAGDTRVI 81 (129)
T ss_dssp SEEEEEECTTSCBSCSEEEECTTCSEEEEEEEECSCCCHHHHCBCCEEE-EGGGHHHHHHHHHHHCGGGTTSCTTCTTEE
T ss_pred EEEEEEeCCCccEecceEEEecCCCEEEEEEEECCCcccccCcceEEEc-CccchhhhHHHhhhhcccccccccccccce
Confidence 3566665555553 46655 996555554 333 999985 332 121111111
Q ss_pred --cccccCCCCcceEEEcC--Ccee-EEEEEcCCCCCccccCCceeEEEEe
Q 042860 67 --ATLLTNPNSTSYTWHPS--RPGF-FYFTFNNGSLQTCNKSSQKLSIKVS 112 (235)
Q Consensus 67 --p~~~s~g~st~~~v~L~--~~G~-~YFiCssg~~~HC~~~GqKl~I~V~ 112 (235)
..++..|.+.+++|+.+ ++|. |+|+|+ ..+|= + |||-.|+|.
T Consensus 82 ~~t~~l~pGet~svtf~~~~l~~G~~Y~f~C~--~pgH~-~-gM~G~i~V~ 128 (129)
T 2ccw_A 82 AHTKVIGGGESDSVTFDVSKIAAGENYAYFCS--FPGHW-A-MMKGTLKLG 128 (129)
T ss_dssp EECCCBCTTCEEEEEEEGGGSCTTCCEEEECC--STTGG-G-TSEEEEEEC
T ss_pred eeeeEECCCCEEEEEEeccccCCCceEEEEeC--CCChh-H-cCEEEEEEe
Confidence 11345555556677776 6766 999994 78997 5 999999985
No 29
>1iko_P Ephrin-B2; greek KEY, glycosylation, signaling protein; HET: NAG MAN; 1.92A {Mus musculus} SCOP: b.6.1.5
Probab=97.85 E-value=1.6e-05 Score=67.45 Aligned_cols=81 Identities=17% Similarity=0.377 Sum_probs=54.9
Q ss_pred eeeCCEEEEEe---c------CCCCceEEecCcccccccCCCC-cc-c--ccCCCC-cceEEEcC-----------Cce-
Q 042860 33 VHVGDTIIFKH---K------FNNSNLYIFKNKNAFNLCNFSQ-AT-L--LTNPNS-TSYTWHPS-----------RPG- 86 (235)
Q Consensus 33 F~VGDtLvF~y---~------~~~HsVv~V~~~~~Y~~Cn~s~-p~-~--~s~g~s-t~~~v~L~-----------~~G- 86 (235)
+++||.|-|-- . ...+.|++| ++++|+.|+... .. + .+.+.. ..|++++. ++|
T Consensus 26 v~igD~LdIiCP~~~~~~~~~~E~~~LY~V-s~~~y~~C~~~~~~~~l~~C~~P~~~~kftikFq~fsP~p~GlEF~pg~ 104 (178)
T 1iko_P 26 PQIGDKLDIICPKVDSKTVGQYEYYKVYMV-DKDQADRCTIKKENTPLLNCARPDQDVKFTIKFQEFSPNLWGLEFQKNK 104 (178)
T ss_dssp CCTTCEEEEECCCCCSSSCSCCCBEEEEEE-CHHHHHHTBCCTTCCCSEEECCTTSCCEEEEECCSSCSSTTCCCCCTTE
T ss_pred ecCCCEEEEECCCCCCCCCCCceEEEEEEE-CHHHhhhcccCCCCcEEEEecCCCCCEEEEEEEEecCCCCCcccccCCC
Confidence 46799998873 2 234789998 999999999874 22 2 344432 23444322 356
Q ss_pred eEEEEEcCC---------CCCccccCCceeEEEEecc
Q 042860 87 FFYFTFNNG---------SLQTCNKSSQKLSIKVSAV 114 (235)
Q Consensus 87 ~~YFiCssg---------~~~HC~~~GqKl~I~V~~~ 114 (235)
.|||||++. .+++|..++|||.|.|...
T Consensus 105 ~YY~IstS~G~~~gl~~~~gG~C~t~~Mkl~ikV~~~ 141 (178)
T 1iko_P 105 DYYIISTSNGSLEGLDNQEGGVCQTRAMKILMKVGQD 141 (178)
T ss_dssp EEEEECCCCBSGGGTTCCBSHHHHHSCCEEEEEETCC
T ss_pred ceEEEecCCcccccccccCCCccccceeEEEEEeecC
Confidence 599999742 2489966799999999663
No 30
>2iaa_C Azurin; quinoprotein, tryptophan tryptophylquinone, cupredoxin, electron transfer, oxidoreductase/electron transport comple; HET: TRQ; 1.95A {Alcaligenes faecalis} PDB: 2h47_C* 2h3x_C*
Probab=97.79 E-value=0.00013 Score=58.16 Aligned_cols=89 Identities=15% Similarity=0.171 Sum_probs=54.6
Q ss_pred EEEecCCCCCCC--Cceee---CCEEEEEec--CC------CCceEEecCcc----------------cccccCCCC---
Q 042860 19 TIFVDGISEWKN--PSVHV---GDTIIFKHK--FN------NSNLYIFKNKN----------------AFNLCNFSQ--- 66 (235)
Q Consensus 19 ~~~VGg~~GW~~--ptF~V---GDtLvF~y~--~~------~HsVv~V~~~~----------------~Y~~Cn~s~--- 66 (235)
++.|+.+.++.+ .++.| ||++.|.+. .. .||++.. +.. +|..=+-.+
T Consensus 3 ~v~v~~~d~m~F~p~~i~V~k~G~~vtv~~~N~g~~p~~~m~Hn~vi~-~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~ 81 (128)
T 2iaa_C 3 DVSIEGNDSMQFNTKSIVVDKTCKEFTINLKHTGKLPKAAMGHNVVVS-KKSDESAVATDGMKAGLNNDYVKAGDERVIA 81 (128)
T ss_dssp EEEEEECTTSCBSCSEEEECTTCSEEEEEEEECSCSCHHHHCBCCEEE-ETTHHHHHHHHHHHHCGGGTTSCTTCTTEEE
T ss_pred EEEEEeCCCceEecCEEEEecCCcEEEEEEEECCCCcccCCCceEEEc-cccchhhHHHhhhhccccccccccccchhhc
Confidence 455655555654 45655 996666654 33 2999975 322 221111111
Q ss_pred -cccccCCCCcceEEEcC--Ccee-EEEEEcCCCCCccccCCceeEEEEe
Q 042860 67 -ATLLTNPNSTSYTWHPS--RPGF-FYFTFNNGSLQTCNKSSQKLSIKVS 112 (235)
Q Consensus 67 -p~~~s~g~st~~~v~L~--~~G~-~YFiCssg~~~HC~~~GqKl~I~V~ 112 (235)
..++..|.+.+++|++. ++|. |.|+|+ .++|= + |||-.|+|.
T Consensus 82 ~t~~l~pGes~~vtf~~~~l~~G~~Y~f~C~--~PgH~-~-gM~G~i~V~ 127 (128)
T 2iaa_C 82 HTSVIGGGETDSVTFDVSKLKEGEDYAFFCS--FPGHW-S-IMKGTIELG 127 (128)
T ss_dssp ECCCBCTTCEEEEEEESSCCCTTCCEEEECC--STTCT-T-TSEEEEEEC
T ss_pred cceeeCCCCEEEEEEeccccCCCceEEEEEC--CCChh-H-CCEEEEEEe
Confidence 11345555555677766 7885 999994 89998 5 999999985
No 31
>2ov0_A Amicyanin; beta-sandwich, electron transport; 0.75A {Paracoccus denitrificans} SCOP: b.6.1.1 PDB: 1aaj_A 1aan_A 1aac_A 1mg2_C* 1mg3_C* 1t5k_A 2gc4_C* 2gc7_C* 2j55_A* 2j56_A* 2j57_A* 2mta_A* 1bxa_A 2rac_A 3l45_A 3ie9_A 3iea_A 2idq_A 2ids_A 1sf3_A ...
Probab=97.74 E-value=6.9e-05 Score=56.72 Aligned_cols=80 Identities=18% Similarity=0.252 Sum_probs=51.5
Q ss_pred cceEEEecCCCCCCC--C--ceeeCCEEEEEecCC-CCceEEecCccc----ccccCCCCcccccCCCCcceEEEcCCce
Q 042860 16 QSATIFVDGISEWKN--P--SVHVGDTIIFKHKFN-NSNLYIFKNKNA----FNLCNFSQATLLTNPNSTSYTWHPSRPG 86 (235)
Q Consensus 16 ~A~~~~VGg~~GW~~--p--tF~VGDtLvF~y~~~-~HsVv~V~~~~~----Y~~Cn~s~p~~~s~g~st~~~v~L~~~G 86 (235)
.+.+|.|.- .+|.+ + ++++||+|.|++... .|||... +..+ ++.+ .+..|. +++++++++|
T Consensus 17 ~a~~~~V~~-~~~~F~P~~i~v~~Gd~V~~~N~d~~~H~v~~~-~~~~g~~~~~~~------~~~pG~--~~~~tf~~~G 86 (105)
T 2ov0_A 17 ADGAIVVDI-AKMKYETPELHVKVGDTVTWINREAMPHNVHFV-AGVLGEAALKGP------MMKKEQ--AYSLTFTEAG 86 (105)
T ss_dssp CTTCEEEEE-ETTEESSSEEEECTTCEEEEEECSSSCBCCEEC-TTTSSSSCEECC------CBCTTE--EEEEEECSCE
T ss_pred CCcCEEEEE-eecEEcCCEEEECCCCEEEEEECCCCCEEEEEc-CCCCCccccccc------ccCCCC--EEEEEeCCCE
Confidence 345555542 23443 2 789999999987654 6999863 2211 2211 133333 3678889999
Q ss_pred eEEEEEcCCCCCccccCCceeEEEEe
Q 042860 87 FFYFTFNNGSLQTCNKSSQKLSIKVS 112 (235)
Q Consensus 87 ~~YFiCssg~~~HC~~~GqKl~I~V~ 112 (235)
.|+|+|+ -|. ||+..|.|.
T Consensus 87 ~y~y~C~----~H~---gM~G~i~V~ 105 (105)
T 2ov0_A 87 TYDYHCT----PHP---FMRGKVVVE 105 (105)
T ss_dssp EEEEECS----SCT---TCEEEEEEC
T ss_pred EEEEEeC----CCC---CCEEEEEEC
Confidence 9999994 264 899999883
No 32
>1nwp_A Azurin; electron transport, cupredoxin, electron transfer; 1.60A {Pseudomonas putida} SCOP: b.6.1.1 PDB: 1nwo_A 1joi_A
Probab=97.72 E-value=0.00014 Score=57.99 Aligned_cols=90 Identities=13% Similarity=0.074 Sum_probs=54.7
Q ss_pred eEEEecCCCCCCC--C--ce-eeCCEEEEEec--CCC------CceEEecCcccc----------------cccCCCCcc
Q 042860 18 ATIFVDGISEWKN--P--SV-HVGDTIIFKHK--FNN------SNLYIFKNKNAF----------------NLCNFSQAT 68 (235)
Q Consensus 18 ~~~~VGg~~GW~~--p--tF-~VGDtLvF~y~--~~~------HsVv~V~~~~~Y----------------~~Cn~s~p~ 68 (235)
-++.|+.+.++.+ . ++ +.||++.|.+. ... ||++.. +..+. ..=+..+.+
T Consensus 3 ~~v~v~~~d~m~F~p~~i~V~k~G~~vtv~~~N~g~~p~~~m~H~~vi~-~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~ 81 (128)
T 1nwp_A 3 CKVTVDSTDQMSFNTKDIAIDKSCKTFTVELTHSGSLPKNVMGHNLVIS-KEADMQPIATDGLSAGIDKQYLKDGDARVI 81 (128)
T ss_dssp CEEEEEECTTSCBSCSEEEECTTCSEEEEEEEECSSCCHHHHCBCCEEE-EGGGHHHHHHHHTTTCGGGTTSCTTCTTEE
T ss_pred EEEEEEeCCCccEecCEEEEecCCCEEEEEEEECCCCcccCCCceEEEc-cccchhhHHHHHhhccccccccccccchhh
Confidence 3566665555654 3 45 66997666654 333 999985 32221 110111111
Q ss_pred ----cccCCCCcceEEEcC--Ccee-EEEEEcCCCCCccccCCceeEEEEe
Q 042860 69 ----LLTNPNSTSYTWHPS--RPGF-FYFTFNNGSLQTCNKSSQKLSIKVS 112 (235)
Q Consensus 69 ----~~s~g~st~~~v~L~--~~G~-~YFiCssg~~~HC~~~GqKl~I~V~ 112 (235)
++..|.+.+++|+.. ++|. |.|+|+ ..+|= + |||..|+|.
T Consensus 82 ~~t~~l~pGet~svtf~~~~l~~G~~Y~f~C~--~PgH~-~-gM~G~i~V~ 128 (128)
T 1nwp_A 82 AHTKVIGAGEKDSVTFDVSKLAAGEKYGFFCS--FPGHI-S-MMKGTVTLK 128 (128)
T ss_dssp EECCCBCTTCEEEEEEEGGGSCTTSCEEEECC--STTCG-G-GSEEEEEEC
T ss_pred eeeeeeCCCCEEEEEEeccccCCCceEEEEEC--CCChh-H-CCEEEEEEC
Confidence 345555555667765 6776 999994 89998 6 999999883
No 33
>1id2_A Amicyanin; beta barrel, type-1 blue copper protein, electron transfer protein, electron transport; 2.15A {Paracoccus versutus} SCOP: b.6.1.1
Probab=97.67 E-value=9.7e-05 Score=56.17 Aligned_cols=69 Identities=12% Similarity=0.157 Sum_probs=45.5
Q ss_pred ceeeCCEEEEEecCC-CCceEEecCcccccccCCCCcccccCCCCcceEEEcCCceeEEEEEcCCCCCccccCCceeEEE
Q 042860 32 SVHVGDTIIFKHKFN-NSNLYIFKNKNAFNLCNFSQATLLTNPNSTSYTWHPSRPGFFYFTFNNGSLQTCNKSSQKLSIK 110 (235)
Q Consensus 32 tF~VGDtLvF~y~~~-~HsVv~V~~~~~Y~~Cn~s~p~~~s~g~st~~~v~L~~~G~~YFiCssg~~~HC~~~GqKl~I~ 110 (235)
++++||+|.|.+... .|||... +... ..-.+. ...+..|. +++++++++|.|.|+|+ -|+ ||+..|.
T Consensus 37 ~V~~G~tV~~~N~d~~~H~v~~~-~~~~-~~~~~~-s~~l~~g~--~~~~tf~~~G~y~~~C~----~H~---~M~G~I~ 104 (106)
T 1id2_A 37 TIKAGETVYWVNGEVMPHNVAFK-KGIV-GEDAFR-GEMMTKDQ--AYAITFNEAGSYDYFCT----PHP---FMRGKVI 104 (106)
T ss_dssp EECTTCEEEEEECSSSCBCCEEC-TTTS-SSSCEE-CCCBCTTE--EEEEEECSCEEEEEECS----SCT---TCEEEEE
T ss_pred EECCCCEEEEEECCCCcEEEEEe-CCCC-Cccccc-ccccCCCC--EEEEEeCCCEEEEEEeC----CCC---CCEEEEE
Confidence 789999999997654 5999864 2210 000000 11233343 36788899999999994 276 9999998
Q ss_pred Ee
Q 042860 111 VS 112 (235)
Q Consensus 111 V~ 112 (235)
|.
T Consensus 105 V~ 106 (106)
T 1id2_A 105 VE 106 (106)
T ss_dssp EC
T ss_pred EC
Confidence 83
No 34
>3czu_B Ephrin-A1; ATP-binding, kinase, nucleotide-binding, receptor, transfera phosphorylation, transmembrane, tyrosine-protein kinase, glycoprotein; HET: NAG MAN; 2.65A {Homo sapiens} PDB: 3mbw_B*
Probab=97.64 E-value=0.00016 Score=61.49 Aligned_cols=106 Identities=17% Similarity=0.306 Sum_probs=58.1
Q ss_pred hhHHHHHHHhhhcccceEEEecCCCCCCC--C---------ceeeCCEEEEE---ecC--------CCCceEEecCcccc
Q 042860 2 LPIFLVLFLLSQQAQSATIFVDGISEWKN--P---------SVHVGDTIIFK---HKF--------NNSNLYIFKNKNAF 59 (235)
Q Consensus 2 ~~~~~ll~ll~~~a~A~~~~VGg~~GW~~--p---------tF~VGDtLvF~---y~~--------~~HsVv~V~~~~~Y 59 (235)
+|.+++|.++...+++..+.|= |+. + .+++||.|-+- |.. ....+++| ++++|
T Consensus 14 ~~~~~~l~~~~~~~sa~rh~Vy----WNSsNp~F~~~~y~i~V~i~D~LDIiCP~y~~~~~~~~~~E~y~LY~V-s~e~y 88 (182)
T 3czu_B 14 IPTTENLYFQGAMDAADRHTVF----WNSSNPKFRNEDYTIHVQLNDYVDIICPHYEDHSVADAAMEQYILYLV-EHEEY 88 (182)
T ss_dssp ---------------CCEEEEE----CSTTCGGGTTSCCEEEECTTCEEEEECCCCC--CCCGGGSCCEEEEEE-CHHHH
T ss_pred chhHHHHHHhhhhhhccccceE----EcCCCccccCCCceEEeccCCEEEEECCCCCCCCCCCCCceEEEEEEE-CHHHh
Confidence 3566667666666667777665 753 2 46889999776 321 33678887 99999
Q ss_pred cccCCCC-cc-c--ccCCCC----cceEEEcC-----------Ccee-EEEEEcCCCCCccccCCceeEEEEecc
Q 042860 60 NLCNFSQ-AT-L--LTNPNS----TSYTWHPS-----------RPGF-FYFTFNNGSLQTCNKSSQKLSIKVSAV 114 (235)
Q Consensus 60 ~~Cn~s~-p~-~--~s~g~s----t~~~v~L~-----------~~G~-~YFiCssg~~~HC~~~GqKl~I~V~~~ 114 (235)
++|+... .. + -+.+.. ..|++++- ++|. ||||+++ ...+. ..-|||.|.|...
T Consensus 89 ~sC~~~~~~~~~~~C~~P~~~~~p~kftikFQ~FSP~p~GlEF~pG~dYY~ISts-~~~~g-g~CmrL~v~V~~k 161 (182)
T 3czu_B 89 QLCQPQSKDQVRWQCNRPSAKHGPEKLSEKFQRFTPFTLGKEFKEGHSYYYISKP-IHQHE-DRCLRLKVTVSGK 161 (182)
T ss_dssp HHTCCCCGGGEEEEECCTTCTTSCCEEEEECCSCCSCTTSCCCCTTCEEEEEEEE-SSSCC-CSCCEEEEEECC-
T ss_pred hhccCCCCCcEEEEeCCCCCCCCCcEEEEEEEEcCCCCCCeeEeCCCeEEEEEcc-CCCCC-CcceEEEEEEecC
Confidence 9999874 32 2 244322 34555542 4565 9999874 33333 4448999999763
No 35
>2x11_B Ephrin-A5; receptor-signaling protein complex, developmental protein, signaling platform, kinase, transferase, neurogenesis, receptor, cataract; 4.83A {Homo sapiens}
Probab=97.56 E-value=0.00035 Score=59.14 Aligned_cols=81 Identities=17% Similarity=0.320 Sum_probs=52.7
Q ss_pred ceeeCCEEEEE---ec-------CCCCceEEecCcccccccCCCCcc--c--ccCCC----CcceEEEcC----------
Q 042860 32 SVHVGDTIIFK---HK-------FNNSNLYIFKNKNAFNLCNFSQAT--L--LTNPN----STSYTWHPS---------- 83 (235)
Q Consensus 32 tF~VGDtLvF~---y~-------~~~HsVv~V~~~~~Y~~Cn~s~p~--~--~s~g~----st~~~v~L~---------- 83 (235)
.+++||.|-+- |+ .+...+++| ++++|++|+.++.. + -+.+. +..|++++.
T Consensus 53 ~V~i~D~LDIiCP~y~~~~~~~~~E~y~LY~V-s~e~y~~C~~~~~~~~~~~C~~P~~p~~~~kftikFQ~FSP~p~G~E 131 (177)
T 2x11_B 53 DVCINDYLDVFCPHYEDSVPEDKTERYVLYMV-NFDGYSACDHTSKGFKRWECNRPHSPNGPLKFSEKFQLFTPFSLGFE 131 (177)
T ss_dssp EECTTCEEEEECCCCCSSSCSSSCCCEEEEEE-CHHHHHHTCCTTTEEEEEEECCTTCSSSSCEEEEECCSSCSSTTCCC
T ss_pred EecCCCEEEEECCCCCCCCCCCCceEEEEEEE-CHHHhccccCCCCCcEEEEeCCCCCCCCCeEEEEEEEEcCCCCCCcc
Confidence 57889999776 33 245678887 99999999986533 2 24432 344555542
Q ss_pred -Ccee-EEEEEcCCCCCc-cccCCceeEEEEeccC
Q 042860 84 -RPGF-FYFTFNNGSLQT-CNKSSQKLSIKVSAVS 115 (235)
Q Consensus 84 -~~G~-~YFiCssg~~~H-C~~~GqKl~I~V~~~~ 115 (235)
++|. ||||+++ .+++ . ..=|||.|.|....
T Consensus 132 F~pG~~YYyISTS-~~~~~g-~~ClrLkV~V~p~~ 164 (177)
T 2x11_B 132 FRPGREYFYISSA-IPDNGR-RSCLKLKVFVRPTN 164 (177)
T ss_dssp CCTTEEEEEEEEE-SSCCCS-SSCCEEEEEECCTT
T ss_pred ccCCCeEEEEecC-CCCCCC-CcceEEEEEEEcCC
Confidence 5666 9999864 3322 2 22289999998753
No 36
>3d12_B Ephrin-B3; beta propeller, protein-receptor complex, envelope protein, glycoprotein, hemagglutinin, hydrolase, membrane, signal-AN transmembrane; HET: NAG BMA MAN BGC LXZ NGA GL0 GLC LXB NGZ GXL; 3.00A {Mus musculus}
Probab=97.55 E-value=0.00014 Score=59.59 Aligned_cols=80 Identities=16% Similarity=0.286 Sum_probs=53.2
Q ss_pred ceeeCCEEEEEe---cC---------CCCceEEecCcccccccCCCC-cc-c--ccCCC-CcceEEEcC-----------
Q 042860 32 SVHVGDTIIFKH---KF---------NNSNLYIFKNKNAFNLCNFSQ-AT-L--LTNPN-STSYTWHPS----------- 83 (235)
Q Consensus 32 tF~VGDtLvF~y---~~---------~~HsVv~V~~~~~Y~~Cn~s~-p~-~--~s~g~-st~~~v~L~----------- 83 (235)
.+++||.|-+-- .. ....+++| ++++|++|+... +. + -+.+. ...|++++-
T Consensus 23 ~V~i~D~ldIiCP~~~~~~~~~~~~~E~~~lY~V-s~~~y~~C~~~~~~~~~~~C~~P~~~~kft~kFq~fsP~p~G~EF 101 (141)
T 3d12_B 23 YPQIGDRLDLLCPRARPPGPHSSPSYEFYKLYLV-EGAQGRRCEAPPAPNLLLTCDRPDLDLRFTIKFQEYSPNLWGHEF 101 (141)
T ss_dssp CCCTTCEEEEEECCCSSCCTTCCSSCCCCEEEEE-CSHHHHTTBCCSSCEEEEECCCSSSCEEEEEESSSCCSCCSCCCC
T ss_pred EecCCCEEEEECCCCCCCCCCCCCCceEEEEEEE-CHHHhccccCCCCCeEEEEeCCCCCCeEEEEEEEEcCCCCCceee
Confidence 478889998763 22 34678887 999999999863 32 2 23332 233444331
Q ss_pred Ccee-EEEEEcCC---------CCCccccCCceeEEEEe
Q 042860 84 RPGF-FYFTFNNG---------SLQTCNKSSQKLSIKVS 112 (235)
Q Consensus 84 ~~G~-~YFiCssg---------~~~HC~~~GqKl~I~V~ 112 (235)
++|. ||||+++. .++-|..++|||.|.|.
T Consensus 102 ~pG~~YY~ISts~G~~~gl~~~~gG~C~t~~Mkl~i~V~ 140 (141)
T 3d12_B 102 RSHHDYYIIATSDGTREGLESLQGGVCLTRGMKVLLRVG 140 (141)
T ss_dssp CTTCEEEEEECSCSSTTTTTCCBCSHHHHTCCEEEEECC
T ss_pred eCCCeEEEEecCCCCcccccccCCCccccceEEEEEEec
Confidence 4555 99999753 24689667999999985
No 37
>2vsm_B Ephrin-B2; developmental protein, henipavirus, neurogenesis, glycoprotein, paramyxovirus, envelope protein, cell surface receptor, hendra, virion; HET: NAG; 1.80A {Homo sapiens} PDB: 2wo2_B* 2i85_A 3gxu_B 2vsk_B 2hle_B 1kgy_E
Probab=97.54 E-value=0.0001 Score=60.21 Aligned_cols=80 Identities=18% Similarity=0.356 Sum_probs=53.5
Q ss_pred eeeCCEEEEEecC---------CCCceEEecCcccccccCCCC-cc-c--ccCCCC-cceEEEcC-----------Ccee
Q 042860 33 VHVGDTIIFKHKF---------NNSNLYIFKNKNAFNLCNFSQ-AT-L--LTNPNS-TSYTWHPS-----------RPGF 87 (235)
Q Consensus 33 F~VGDtLvF~y~~---------~~HsVv~V~~~~~Y~~Cn~s~-p~-~--~s~g~s-t~~~v~L~-----------~~G~ 87 (235)
+++||.|-+--.. ....+++| ++++|+.|+... .. + -+.+.. ..|++++. ++|.
T Consensus 25 v~i~D~ldIiCP~~~~~~~~~~E~~~lY~V-s~~~y~~C~~~~~~~~~~~C~~P~~~~kft~kFq~fsP~~~G~eF~~g~ 103 (140)
T 2vsm_B 25 PQIGDKLDIICPKVDSKTVGQYEYYKVYMV-DKDQADRCTIKKENTPLLNCAKPDQDIKFTIKFQEFSPNLWGLEFQKNK 103 (140)
T ss_dssp CCTTCEEEEEECCCC---CCCCCBEEEEEE-CHHHHHHTBCCTTCCCSEEECCTTSCEEEEEESSSCCSCSSCCCCCTTE
T ss_pred ecCCCEEEEECCCCCCCCCCCceEEEEEEE-CHHHhhhcccCCCCcEEEEecCCCCCEEEEEEEEecCCCCCcccccCCC
Confidence 5678999887321 24678887 999999999874 22 2 244322 23444432 4555
Q ss_pred -EEEEEcCC---------CCCccccCCceeEEEEec
Q 042860 88 -FYFTFNNG---------SLQTCNKSSQKLSIKVSA 113 (235)
Q Consensus 88 -~YFiCssg---------~~~HC~~~GqKl~I~V~~ 113 (235)
||||+++. .++-|..++|||.|.|..
T Consensus 104 ~YY~Ists~g~~~gl~~~~gG~C~t~~mkl~i~V~~ 139 (140)
T 2vsm_B 104 DYYIISTSNGSLEGLDNQEGGVCQTRAMKILMKVGH 139 (140)
T ss_dssp EEEEECCCCBSGGGTTCCBSHHHHHSCCEEEEEETC
T ss_pred ceEEEecCCCCccccccccCCccccceEEEEEEecC
Confidence 99998753 346897779999999954
No 38
>3c75_A Amicyanin; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=97.53 E-value=0.00018 Score=57.04 Aligned_cols=69 Identities=12% Similarity=0.130 Sum_probs=45.6
Q ss_pred ceeeCCEEEEEecCC-CCceEEecCcccccccCCCCcccccCCCCcceEEEcCCceeEEEEEcCCCCCccccCCceeEEE
Q 042860 32 SVHVGDTIIFKHKFN-NSNLYIFKNKNAFNLCNFSQATLLTNPNSTSYTWHPSRPGFFYFTFNNGSLQTCNKSSQKLSIK 110 (235)
Q Consensus 32 tF~VGDtLvF~y~~~-~HsVv~V~~~~~Y~~Cn~s~p~~~s~g~st~~~v~L~~~G~~YFiCssg~~~HC~~~GqKl~I~ 110 (235)
++++||+|.|.+... .|||... +...- .=.+. ...+..|. +++++++++|.|+|+|+ -|. ||+..|.
T Consensus 63 ~V~~GdtV~~~N~d~~~H~v~~~-~~~~g-~~~~~-s~~l~pG~--t~~~tF~~~G~y~y~C~----~H~---gM~G~I~ 130 (132)
T 3c75_A 63 TIKAGETVYWVNGEVMPHNVAFK-KGIVG-EDAFR-GEMMTKDQ--AYAITFNEAGSYDYFCT----PHP---FMRGKVI 130 (132)
T ss_dssp EECTTCEEEEEECSSSCBCCEEC-TTTSS-SSCEE-CCCBCTTE--EEEEEECSCEEEEEECS----SCT---TCEEEEE
T ss_pred EECCCCEEEEEECCCCceEEEEe-CCCCC-ccccc-ccccCCCC--EEEEEcCCCEEEEEEeC----CCc---CCEEEEE
Confidence 789999999997654 5999874 22110 00000 11233343 36788899999999994 275 9999998
Q ss_pred Ee
Q 042860 111 VS 112 (235)
Q Consensus 111 V~ 112 (235)
|.
T Consensus 131 V~ 132 (132)
T 3c75_A 131 VE 132 (132)
T ss_dssp EC
T ss_pred EC
Confidence 84
No 39
>1iby_A Nitrosocyanin; RED copper, cupredoxin, beta hairpin, metal binding protein; 1.65A {Nitrosomonas europaea} SCOP: b.6.1.4 PDB: 1ibz_A 1ic0_A
Probab=97.27 E-value=0.00061 Score=51.62 Aligned_cols=68 Identities=10% Similarity=0.093 Sum_probs=45.9
Q ss_pred ceeeCCEEEEEecC---CCCceEEecCcccccccCCCCcccccCCCCcceEEEcCCceeEEEEEcCCCCCccccCCceeE
Q 042860 32 SVHVGDTIIFKHKF---NNSNLYIFKNKNAFNLCNFSQATLLTNPNSTSYTWHPSRPGFFYFTFNNGSLQTCNKSSQKLS 108 (235)
Q Consensus 32 tF~VGDtLvF~y~~---~~HsVv~V~~~~~Y~~Cn~s~p~~~s~g~st~~~v~L~~~G~~YFiCssg~~~HC~~~GqKl~ 108 (235)
++++||.+.|++.+ ..|++..- ..+. ...+..|.+..++|+.+++|.|+|.| ..||...+|+..
T Consensus 41 ~v~~G~~V~~~~~n~d~~~H~~~i~--~~~~-------~~~i~pG~~~~~~f~~~~~G~y~~~C----~~~~~~~~M~g~ 107 (112)
T 1iby_A 41 VVKKGDAVKVVVENKSPISEGFSID--AFGV-------QEVIKAGETKTISFTADKAGAFTIWC----QLHPKNIHLPGT 107 (112)
T ss_dssp EEETTCEEEEEEEECSSSCEEEEEG--GGTE-------EEEECTTCEEEEEEECCSCEEEEEBC----SSSCTTTBCCEE
T ss_pred EEeCCCEEEEEEEECCCCeEEEEEc--CCCc-------eeEeCCCCEEEEEEECCCCEEEEEEC----CCCCchHHCEEE
Confidence 68999999998753 25887642 2110 11244454445666669999999999 568822349999
Q ss_pred EEEe
Q 042860 109 IKVS 112 (235)
Q Consensus 109 I~V~ 112 (235)
|.|.
T Consensus 108 i~V~ 111 (112)
T 1iby_A 108 LNVV 111 (112)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 9985
No 40
>2cua_A Protein (CUA); CUA center, electron transport; 1.60A {Thermus thermophilus} SCOP: b.6.1.2 PDB: 2fwl_B*
Probab=97.03 E-value=0.0018 Score=51.84 Aligned_cols=81 Identities=17% Similarity=0.208 Sum_probs=52.2
Q ss_pred eEEEecC-CCCCCCC--ceeeCCEEEEEecCC--CCceEEecCcccccccCCCCcccccCCCCcceEEEcCCceeEEEEE
Q 042860 18 ATIFVDG-ISEWKNP--SVHVGDTIIFKHKFN--NSNLYIFKNKNAFNLCNFSQATLLTNPNSTSYTWHPSRPGFFYFTF 92 (235)
Q Consensus 18 ~~~~VGg-~~GW~~p--tF~VGDtLvF~y~~~--~HsVv~V~~~~~Y~~Cn~s~p~~~s~g~st~~~v~L~~~G~~YFiC 92 (235)
.++.|.+ .-.|... ++.+||.+.|...+. .|+... .+.+. ......|..+.+.++++++|.|+|.|
T Consensus 46 ~~V~v~~~~~~f~P~~l~Vp~G~~V~~~vts~DV~Hsf~i--p~~~~-------k~d~~PG~~~~~~~~~~~~G~y~~~C 116 (135)
T 2cua_A 46 YTVYVLAFAFGYQPNPIEVPQGAEIVFKITSPDVIHGFHV--EGTNI-------NVEVLPGEVSTVRYTFKRPGEYRIIC 116 (135)
T ss_dssp EEEEEEEETTEEESSSEEEETTSEEEEEEEBSSSCEEEEE--TTSSC-------EEEECBTBCEEEEEECCSCEEEEEEC
T ss_pred EEEEEEEEeCEEECCEEEEcCCCEEEEEEEeCCccceEEe--cCCCc-------eeEeCCCCcEEEEEEcCCCEEEEEEC
Confidence 3455543 3345533 688899999998652 477664 11111 11123333345789999999999999
Q ss_pred cCCCCCcccc---CCceeEEEEe
Q 042860 93 NNGSLQTCNK---SSQKLSIKVS 112 (235)
Q Consensus 93 ssg~~~HC~~---~GqKl~I~V~ 112 (235)
..+| . .+|+..|.|.
T Consensus 117 ----~e~C-G~~H~~M~g~v~V~ 134 (135)
T 2cua_A 117 ----NQYC-GLGHQNMFGTIVVK 134 (135)
T ss_dssp ----CSCC-STTSTTCEEEEEEE
T ss_pred ----cccC-CCCcCCCEEEEEEE
Confidence 4577 5 6899999986
No 41
>1shx_A Ephrin-A5; ephrin signaling, hormone-growth factor complex; HET: NAG; 2.10A {Mus musculus} SCOP: b.6.1.5 PDB: 1shw_A* 3mx0_B*
Probab=96.77 E-value=0.0047 Score=50.28 Aligned_cols=80 Identities=18% Similarity=0.320 Sum_probs=51.3
Q ss_pred ceeeCCEEEEE---ec-------CCCCceEEecCcccccccCCCCcc--c--ccCCC----CcceEEEcC----------
Q 042860 32 SVHVGDTIIFK---HK-------FNNSNLYIFKNKNAFNLCNFSQAT--L--LTNPN----STSYTWHPS---------- 83 (235)
Q Consensus 32 tF~VGDtLvF~---y~-------~~~HsVv~V~~~~~Y~~Cn~s~p~--~--~s~g~----st~~~v~L~---------- 83 (235)
.+++||.|-+- |. .....+++| ++++|++|+..... + -+.+. ...|++++-
T Consensus 24 ~V~i~D~lDIiCP~~~~~~~~~~~E~~~lY~V-s~~~y~~C~~~~~~~~~~~C~~P~~p~~~~kftikFq~fsP~p~G~E 102 (138)
T 1shx_A 24 DVCINDYLDVFCPHYEDSVPEDKTERYVLYMV-NFDGYSACDHTSKGFKRWECNRPHSPNGPLKFSEKFQLFTPFSLGFE 102 (138)
T ss_dssp EECTTCEEEEECCCCCTTCCSTTCCCEEEEEE-CHHHHHTTCSSSSEEEEEEECCTTCTTSSCEEEEECCSCCSSTTCCC
T ss_pred EecCCCEEEEECCCCCCCCCCCCceEEEEEEE-CHHHhccccCCCCCCEEEEeCCCCCCCCCeEEEEEEEEcCCCCCcee
Confidence 47889999776 33 235678887 99999999986532 2 24332 334555542
Q ss_pred -Ccee-EEEEEcCCCCCc-cccCCceeEEEEecc
Q 042860 84 -RPGF-FYFTFNNGSLQT-CNKSSQKLSIKVSAV 114 (235)
Q Consensus 84 -~~G~-~YFiCssg~~~H-C~~~GqKl~I~V~~~ 114 (235)
++|. ||||+++ .+.+ . ..=|||.|.|...
T Consensus 103 F~pG~~YY~ISts-~~~~~g-~~ClrL~V~V~p~ 134 (138)
T 1shx_A 103 FRPGREYFYISSA-IPDNGR-RSCLKLKVFVRPT 134 (138)
T ss_dssp CCTTEEEEEEEEE-SSCCSC-SCCCEEEEEECCT
T ss_pred ecCCCeEEEEEcC-CCCCCC-CceeEEEEEEEcc
Confidence 4666 9999864 2222 1 1228999999763
No 42
>3fsa_A Azurin; copper, cupredoxin fold, metal-binding, protein-protein interaction, metal binding protein; 0.98A {Pseudomonas aeruginosa} SCOP: b.6.1.1 PDB: 2xv2_A 2xv0_A 3fs9_A 2fta_A* 2hx7_A 2hx8_A 2hx9_A 2hxa_A 1cc3_A 2ft6_A 2ft7_A 2ft8_A 1azn_A 3n2j_A 2iwe_A 2ghz_A 2gi0_A 1jzg_A* 1azu_A* 1bex_A ...
Probab=96.45 E-value=0.02 Score=45.77 Aligned_cols=86 Identities=12% Similarity=0.148 Sum_probs=49.3
Q ss_pred EEEecCCCCCC--CCceee---CCEEEEEecC-C-------CCceEEecCccc----------------ccccCCCCcc-
Q 042860 19 TIFVDGISEWK--NPSVHV---GDTIIFKHKF-N-------NSNLYIFKNKNA----------------FNLCNFSQAT- 68 (235)
Q Consensus 19 ~~~VGg~~GW~--~ptF~V---GDtLvF~y~~-~-------~HsVv~V~~~~~----------------Y~~Cn~s~p~- 68 (235)
++.|..+.+.. .++|.| |+++.|.+.+ + .||+++. +..+ |-.=+-.+.+
T Consensus 4 ~v~i~~~d~M~F~p~~i~V~~~Ge~V~~~l~N~G~~p~~~M~Hn~Vl~-~~~~~~~~~~~~m~~~~~~~y~~~~d~~via 82 (125)
T 3fsa_A 4 SVDIQGNDQMQFNTNAITVDKSCKQFTVNLSHPGNLPKNVMGHNWVLS-TAADMQGVVTDGMASGLDKDYLKPDDSRVIA 82 (125)
T ss_dssp EEEEEBCTTSCBSCSEEEECTTCSEEEEEEECCSSCCHHHHCBCCEEE-EHHHHHHHHHHHHHHCGGGTTSCTTCTTCCE
T ss_pred EEEEEccCCcEEecCEEEEecCCCEEEEEEEECCcccccccCceEEEc-ccchHHHHHHHHHhcChhhccCCCCCcccee
Confidence 34444444444 345655 9998777654 2 3999986 3221 2111111111
Q ss_pred ---cccCCCCcceEEEcC---CceeEEEEEcCCCCCccccCCceeEEEEe
Q 042860 69 ---LLTNPNSTSYTWHPS---RPGFFYFTFNNGSLQTCNKSSQKLSIKVS 112 (235)
Q Consensus 69 ---~~s~g~st~~~v~L~---~~G~~YFiCssg~~~HC~~~GqKl~I~V~ 112 (235)
++..|.+.+++|+.. ++|.|-|+|+ +| . |||-.|+|.
T Consensus 83 ~t~~l~pGes~~vtf~~~~l~~~G~y~f~C~----gH--~-~M~G~v~V~ 125 (125)
T 3fsa_A 83 HTKLIGSGEKDSVTFDVSKLKEGEQYMFFCA----AH--A-AMKGTLTLK 125 (125)
T ss_dssp ECCCBCTTCEEEEEEEGGGC---CCEEEECS----SS--T-TCEEEEEEC
T ss_pred ccceeCCCcEEEEEEeCcCcCCCccEEEEcC----CC--C-CcEEEEEEC
Confidence 245555555667665 7899999992 77 4 999999883
No 43
>2wo3_B Ephrin-A2; transferase-signaling protein complex, EFN, EPHA4, KINA ephrin, complex, membrane, cell surface receptor, tyrosine- kinase, glycoprotein; HET: NAG; 2.35A {Homo sapiens}
Probab=96.38 E-value=0.012 Score=48.76 Aligned_cols=78 Identities=19% Similarity=0.373 Sum_probs=48.6
Q ss_pred ceeeCCEEEEE---ec--------CCCCceEEecCcccccccCCCCcc--c--ccCCC----CcceEEEcC---------
Q 042860 32 SVHVGDTIIFK---HK--------FNNSNLYIFKNKNAFNLCNFSQAT--L--LTNPN----STSYTWHPS--------- 83 (235)
Q Consensus 32 tF~VGDtLvF~---y~--------~~~HsVv~V~~~~~Y~~Cn~s~p~--~--~s~g~----st~~~v~L~--------- 83 (235)
.+++||.|-+- |. .....+++| ++++|++|+..... + -+.+. ...|++++-
T Consensus 33 ~V~i~D~LDIiCP~y~~~~~~~~~~E~y~LY~V-s~~~y~~C~~~~~~~~~~~C~~P~~p~~~~kftikFQ~fSP~p~G~ 111 (157)
T 2wo3_B 33 EVSINDYLDIYCPHYGAPLPPAERMEHYVLYMV-NGEGHASCDHRQRGFKRWECNRPAAPGGPLKFSEKFQLFTPFSLGF 111 (157)
T ss_dssp EECTTCEEEEECCCCCSSCCCGGGSCCEEEEEE-CHHHHHHTCCTTSEEEEEEECCTTCTTSSCEEEEECCSSCSSTTSC
T ss_pred EeccCCEEEEECCCCCCCCCCCCCceEEEEEEE-CHHHhccccCCCCCCEEEEeCCCCCCCCCeEEEEEEEECCCCCCCe
Confidence 47789999876 32 123458887 99999999987632 2 23332 234555542
Q ss_pred --Ccee-EEEEEcCC---CCCccccCCceeEEEEecc
Q 042860 84 --RPGF-FYFTFNNG---SLQTCNKSSQKLSIKVSAV 114 (235)
Q Consensus 84 --~~G~-~YFiCssg---~~~HC~~~GqKl~I~V~~~ 114 (235)
++|. ||||+++. .++-| |||.|.|...
T Consensus 112 EF~pG~~YY~ISTS~g~~~gg~C----~rlkV~V~~~ 144 (157)
T 2wo3_B 112 EFRPGHEYYYISATPPNAVDRPC----LRLKVYVRPT 144 (157)
T ss_dssp CCCTTCEEEEEEECTTCSCCTTC----CEEEEEECCC
T ss_pred eeeCCCeEEEEEecCCCCCCCcc----eeEEEEEEcC
Confidence 4555 99998742 23456 3777777653
No 44
>3s8f_B Cytochrome C oxidase subunit 2; complex IV, respiratory chain, lipid cubic phase, monoolein, peroxide, electron transport, proton pump; HET: HEM HAS OLC; 1.80A {Thermus thermophilus} PDB: 1ehk_B* 2qpd_B* 3qjq_B* 3qjr_B* 3qju_B* 3qjv_B* 1xme_B* 3s8g_B* 4esl_B* 4ev3_B* 4f05_B* 4fa7_B* 4faa_B* 3qjs_B* 3bvd_B* 2qpe_B* 3qjt_B* 3s3b_B* 3s33_B* 3s39_B* ...
Probab=95.93 E-value=0.025 Score=47.08 Aligned_cols=68 Identities=18% Similarity=0.196 Sum_probs=42.9
Q ss_pred ceeeCCEEEEEecCC--CCceEEecCcccccccCCCCcccccCCCCcceEEEcCCceeEEEEEcCCCCCccc--cCCcee
Q 042860 32 SVHVGDTIIFKHKFN--NSNLYIFKNKNAFNLCNFSQATLLTNPNSTSYTWHPSRPGFFYFTFNNGSLQTCN--KSSQKL 107 (235)
Q Consensus 32 tF~VGDtLvF~y~~~--~HsVv~V~~~~~Y~~Cn~s~p~~~s~g~st~~~v~L~~~G~~YFiCssg~~~HC~--~~GqKl 107 (235)
.+.+|+.+.|...+. .|+...- ..+. ......|..+.+.++.+++|.|||.| ...|+ -.+|+.
T Consensus 96 ~VP~G~~Vr~~vTS~DViHsf~IP--~lgi-------k~da~PG~~n~~~~~~~kpG~y~g~C----se~CG~~Hs~M~g 162 (168)
T 3s8f_B 96 EVPQGAEIVFKITSPDVIHGFHVE--GTNI-------NVEVLPGEVSTVRYTFKRPGEYRIIC----NQYCGLGHQNMFG 162 (168)
T ss_dssp EEETTSEEEEEEECSSSCEEEEET--TSSC-------EEEECTTBCEEEEEECCSCEEEEEEC----CSCCSTTGGGCEE
T ss_pred EEeCCCeEEEEEecCCceEEEEEC--CCCe-------EEEecCCceeEEEEEeCCCEEEEEEC----CcCCCCCcCCCEE
Confidence 578888888887652 3555531 1110 11122333345788999999999999 34561 346999
Q ss_pred EEEEe
Q 042860 108 SIKVS 112 (235)
Q Consensus 108 ~I~V~ 112 (235)
.|.|.
T Consensus 163 ~V~V~ 167 (168)
T 3s8f_B 163 TIVVK 167 (168)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 99986
No 45
>2dv6_A Nitrite reductase; electron transfer, reduction, denitrification, oxidoreductase; 2.20A {Hyphomicrobium denitrificans}
Probab=95.60 E-value=0.023 Score=52.39 Aligned_cols=73 Identities=15% Similarity=0.166 Sum_probs=52.0
Q ss_pred ceeeCCEEEEEecCC---CCceEEecCcccccccCCCCcccccCCCCcceEEEcCCceeEEEEEcCCCCCccccCCceeE
Q 042860 32 SVHVGDTIIFKHKFN---NSNLYIFKNKNAFNLCNFSQATLLTNPNSTSYTWHPSRPGFFYFTFNNGSLQTCNKSSQKLS 108 (235)
Q Consensus 32 tF~VGDtLvF~y~~~---~HsVv~V~~~~~Y~~Cn~s~p~~~s~g~st~~~v~L~~~G~~YFiCssg~~~HC~~~GqKl~ 108 (235)
+++.||+|+|++.+. .|++.. ........|. +..|.+..|+|+++++|+|||.|. ..+|= ..||+..
T Consensus 58 ~v~~Gd~v~~~~~N~~~~~h~~~~-~g~~~~~~~~------i~pG~~~~~~f~~~~~Gt~~y~~~--~~~h~-~~Gm~G~ 127 (447)
T 2dv6_A 58 VVHEGETVQVNLVNGEGAQHDVVV-DQYAARSAIV------NGKNASSTFSFVASKVGEFNYYCS--IAGHR-QAGMEGN 127 (447)
T ss_dssp EEETTCEEEEEEECSSSSCBCCEE-TTTTEECCCB------CSTTBEEEEEEECCSCEEEEEECC--STTHH-HHTCEEE
T ss_pred EEcCCCEEEEEEEcCCCCceEEEE-ccCCccccee------cCCCCeEEEEEEcCCCEEEEEEeC--CCChh-hCCCEEE
Confidence 689999999888642 388764 2222222232 344544457788889999999995 67888 8899999
Q ss_pred EEEecc
Q 042860 109 IKVSAV 114 (235)
Q Consensus 109 I~V~~~ 114 (235)
|.|...
T Consensus 128 i~V~~~ 133 (447)
T 2dv6_A 128 IQVLPG 133 (447)
T ss_dssp EEEESS
T ss_pred EEEeCC
Confidence 999864
No 46
>3hei_B Ephrin-A1; EPH receptor tyrosine kinase, cell membrane, disulfi glycoprotein, GPI-anchor, lipoprotein, membrane, ATP-bindin kinase; 2.00A {Homo sapiens} SCOP: b.6.1.0
Probab=95.24 E-value=0.059 Score=43.47 Aligned_cols=78 Identities=15% Similarity=0.283 Sum_probs=47.6
Q ss_pred ceeeCCEEEEE---ecC--------CCCceEEecCcccccccCCCC-cc-c--ccCCC----CcceEEEcC---------
Q 042860 32 SVHVGDTIIFK---HKF--------NNSNLYIFKNKNAFNLCNFSQ-AT-L--LTNPN----STSYTWHPS--------- 83 (235)
Q Consensus 32 tF~VGDtLvF~---y~~--------~~HsVv~V~~~~~Y~~Cn~s~-p~-~--~s~g~----st~~~v~L~--------- 83 (235)
.+++||.|-+- |+. ....+++| ++++|++|+... .. + -+.+. ...|++++-
T Consensus 23 ~V~i~D~LDIiCP~y~~~~~~~~~~E~y~LY~V-s~~~y~~C~~~~~~~~~~~C~~P~~~~~~~kft~kFQ~FSP~p~G~ 101 (132)
T 3hei_B 23 HVQLNDYVDIICPHYEDHSVADAAMEQYILYLV-EHEEYQLCQPQSKDQVRWQCNRPSAKHGPEKLSEKFQRFTPFTLGK 101 (132)
T ss_dssp EECTTCEEEEECCCCCTTSSCGGGCCCEEEEEE-CHHHHHHTCCSCGGGEEEEECCTTCTTSCCEEEEECCSCCSCTTSC
T ss_pred EeCCCCeEEEECCCCCCCCCCCCCccEEEEEEe-CHHHhccccCCCCCcEEEEeCCCCCCCCceEEEEEEEEcCCCCCCe
Confidence 46889999775 322 34678887 999999999875 33 2 24442 234555542
Q ss_pred --Ccee-EEEEEcCCCCCccccCCceeEEEEe
Q 042860 84 --RPGF-FYFTFNNGSLQTCNKSSQKLSIKVS 112 (235)
Q Consensus 84 --~~G~-~YFiCssg~~~HC~~~GqKl~I~V~ 112 (235)
++|. ||||+++ ...|= ..=+||.|.|.
T Consensus 102 EF~pG~~YY~ISt~-~~~~~-~~cl~l~v~v~ 131 (132)
T 3hei_B 102 EFKEGHSYYYISKP-IHQHE-DRCLRLKVTVK 131 (132)
T ss_dssp CCCTTCEEEEEEEE-SSCCC-CSCCEEEEEEC
T ss_pred eecCCCcEEEEEcc-CCCCC-CcceEEEEEEE
Confidence 4565 9999863 22222 22357777663
No 47
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=95.13 E-value=0.034 Score=54.94 Aligned_cols=68 Identities=15% Similarity=0.290 Sum_probs=46.9
Q ss_pred ceeeCCEEEEEecCC------CCceEEecCcccccccCCCCcccccCCCCcceEEEcCCceeEEEEEcCCCCCccccCC-
Q 042860 32 SVHVGDTIIFKHKFN------NSNLYIFKNKNAFNLCNFSQATLLTNPNSTSYTWHPSRPGFFYFTFNNGSLQTCNKSS- 104 (235)
Q Consensus 32 tF~VGDtLvF~y~~~------~HsVv~V~~~~~Y~~Cn~s~p~~~s~g~st~~~v~L~~~G~~YFiCssg~~~HC~~~G- 104 (235)
++.+||.+.|...+. .|+...- + ... ......|....++|+.+++|.|||+| ...| ..+
T Consensus 561 ~VP~GdtVrfiLTN~D~veDViHSF~IP-s-lGI-------K~DaiPGrtnsvtFtadkPGvY~y~C----SE~C-Ga~H 626 (638)
T 3sbq_A 561 TVKQGDEVTVTITNIDQIEDVSHGFVVV-N-HGV-------SMEISPQQTSSITFVADKPGLHWYYC----SWFC-HALH 626 (638)
T ss_dssp EEETTCEEEEEEEECCCSTTCCEEEEET-T-TTE-------EEEECTTCEEEEEEECCSCEEEEEEC----CSCC-STTC
T ss_pred EEecCceeEEEEecCCcCCCceeeeEec-C-CCc-------eeeeCCCCeEEEEEEcCCCEEEEEEC----CCcC-CCCc
Confidence 689999999987652 5777752 1 110 01133343445788899999999999 3478 554
Q ss_pred --ceeEEEEec
Q 042860 105 --QKLSIKVSA 113 (235)
Q Consensus 105 --qKl~I~V~~ 113 (235)
|+..|.|.+
T Consensus 627 s~M~G~ViVEP 637 (638)
T 3sbq_A 627 MEMVGRMMVEP 637 (638)
T ss_dssp TTCEEEEEEEC
T ss_pred ccceEEEEEec
Confidence 999999975
No 48
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=95.05 E-value=0.041 Score=54.04 Aligned_cols=70 Identities=14% Similarity=0.203 Sum_probs=47.3
Q ss_pred ceeeCCEEEEEecCC------CCceEEecCcccccccCCCCcccccCCCCcceEEEcCCceeEEEEEcCCCCCcc--ccC
Q 042860 32 SVHVGDTIIFKHKFN------NSNLYIFKNKNAFNLCNFSQATLLTNPNSTSYTWHPSRPGFFYFTFNNGSLQTC--NKS 103 (235)
Q Consensus 32 tF~VGDtLvF~y~~~------~HsVv~V~~~~~Y~~Cn~s~p~~~s~g~st~~~v~L~~~G~~YFiCssg~~~HC--~~~ 103 (235)
++++||++.|...+. .|++..- + ...+ .....|.+..++|+++++|.|||.|. .+| ...
T Consensus 516 ~V~~Gd~V~~~ltN~d~~~Dv~Hgf~ip-~-~gv~-------~~i~PG~t~t~~Fta~~pGtY~yhC~----e~Cg~~H~ 582 (595)
T 1fwx_A 516 TVKEGDEVTVIVTNLDEIDDLTHGFTMG-N-YGVA-------MEIGPQMTSSVTFVAANPGVYWYYCQ----WFCHALHM 582 (595)
T ss_dssp EEETTCEEEEEEEECCCSTTCCEEEEET-T-TTEE-------EEECTTCEEEEEEECCSCEEEEEECC----SCCSTTCT
T ss_pred EEECCCEEEEEEEeCCCCCCceeeEEec-C-CCcc-------eeeCCCCeEEEEEECCCCEEEEEECC----CCCCCCcc
Confidence 688999999997652 4777652 1 1111 12344444567889999999999993 344 124
Q ss_pred CceeEEEEecc
Q 042860 104 SQKLSIKVSAV 114 (235)
Q Consensus 104 GqKl~I~V~~~ 114 (235)
||+..|.|...
T Consensus 583 gM~G~IiV~p~ 593 (595)
T 1fwx_A 583 EMRGRMLVEPK 593 (595)
T ss_dssp TCEEEEEEECC
T ss_pred CCEEEEEEEcC
Confidence 89999999763
No 49
>1oe1_A Dissimilatory copper-containing nitrite reductase; denitrification; HET: PG4; 1.04A {Alcaligenes xylosoxidans} SCOP: b.6.1.3 b.6.1.3 PDB: 1oe3_A* 2xwz_A* 2vn3_A 2zon_A* 1haw_A 1hau_A* 2vm4_A* 2vw4_A* 2vw6_A* 2vw7_A* 2vm3_A* 1oe2_A* 2jl0_A* 2xx1_A 2xxg_A* 2xxf_A* 1gs8_A 1wa1_X* 1wa2_X* 2jl3_A* ...
Probab=87.72 E-value=1.6 Score=38.61 Aligned_cols=76 Identities=13% Similarity=0.108 Sum_probs=49.3
Q ss_pred ceeeCCEEEEEecC-----CCCceEEecCcccccccCCCCcc-cccCCCCcceEEEcCCceeEEEEEcCCCC----Cccc
Q 042860 32 SVHVGDTIIFKHKF-----NNSNLYIFKNKNAFNLCNFSQAT-LLTNPNSTSYTWHPSRPGFFYFTFNNGSL----QTCN 101 (235)
Q Consensus 32 tF~VGDtLvF~y~~-----~~HsVv~V~~~~~Y~~Cn~s~p~-~~s~g~st~~~v~L~~~G~~YFiCssg~~----~HC~ 101 (235)
+++.||+|++++.+ ..|++.+- .....+ + .... ....|.+-.|+|+++++|+|||-|. .. .|=
T Consensus 68 ~v~~Gd~v~v~~~N~~~~~~~h~~~~h-~~~~~~--~-~~~~~~i~pG~~~~y~f~~~~~Gt~~yH~h--~~~~~~~~~- 140 (336)
T 1oe1_A 68 VVHEGDYVQLTLVNPATNAMPHNVDFH-GATGAL--G-GAKLTNVNPGEQATLRFKADRSGTFVYHCA--PEGMVPWHV- 140 (336)
T ss_dssp EEETTCEEEEEEEECTTCCSCBCCEET-TSCSGG--G-GGGGCCBCTTEEEEEEEECCSCEEEEEECC--CTTCHHHHH-
T ss_pred EEcCCCEEEEEEEcCCCCCccccceEC-CCCCCC--C-CcceEEeCCCCEEEEEEECCCCeEEEEecC--CCCchhHHH-
Confidence 68899999988765 25777652 111100 0 0111 2444555568888899999999994 32 244
Q ss_pred cCCceeEEEEecc
Q 042860 102 KSSQKLSIKVSAV 114 (235)
Q Consensus 102 ~~GqKl~I~V~~~ 114 (235)
..||.-.|.|...
T Consensus 141 ~~Gl~G~liV~~~ 153 (336)
T 1oe1_A 141 VSGMSGTLMVLPR 153 (336)
T ss_dssp HTTCEEEEEEECT
T ss_pred hCCCeEEEEEecC
Confidence 6899999999864
No 50
>1kbv_A ANIA, major outer membrane protein PAN 1; ANIA[NO2-], oxidoreductase; 1.95A {Neisseria gonorrhoeae} SCOP: b.6.1.3 b.6.1.3 PDB: 1kbw_A
Probab=87.21 E-value=1.2 Score=39.66 Aligned_cols=78 Identities=15% Similarity=0.168 Sum_probs=47.8
Q ss_pred ceeeCCEEEEEecCC-----CCceEEecCcccccccCCCCcccccCCCCcceEEEcCCceeEEEEEcC-CCCCccccCCc
Q 042860 32 SVHVGDTIIFKHKFN-----NSNLYIFKNKNAFNLCNFSQATLLTNPNSTSYTWHPSRPGFFYFTFNN-GSLQTCNKSSQ 105 (235)
Q Consensus 32 tF~VGDtLvF~y~~~-----~HsVv~V~~~~~Y~~Cn~s~p~~~s~g~st~~~v~L~~~G~~YFiCss-g~~~HC~~~Gq 105 (235)
+++.||++++++.+. .|++..= --...|. .........|.+-.|.|+.+++|+|||-|.. +...|- ..||
T Consensus 73 ~v~~Gd~v~v~~~N~~~~~~~~~ih~H-G~~~~dG--~~~~~~i~PG~~~~y~f~~~~~Gt~wyH~h~~~~~~~~-~~Gl 148 (327)
T 1kbv_A 73 RVREGDTVEVEFSNNPSSTVPHNVDFH-AATGQGG--GAAATFTAPGRTSTFSFKALQPGLYIYHCAVAPVGMHI-ANGM 148 (327)
T ss_dssp EEETTCEEEEEEEECTTCSSCBCCEET-TCCSGGG--GTTTTCBCTTEEEEEEEECCSCEEEEEECCCSSHHHHH-HTTC
T ss_pred EEeCCCEEEEEEEECCCCCCceeeEeC-ccccCCC--CCcceeecCCCEEEEEEECCCCeEEEEEeCCCChhhhh-hcce
Confidence 689999999987653 3666531 1011110 0001124445444678888999999999941 013455 7899
Q ss_pred eeEEEEec
Q 042860 106 KLSIKVSA 113 (235)
Q Consensus 106 Kl~I~V~~ 113 (235)
...|.|..
T Consensus 149 ~G~~iV~~ 156 (327)
T 1kbv_A 149 YGLILVEP 156 (327)
T ss_dssp EEEEEEEC
T ss_pred EEEEEEec
Confidence 99999976
No 51
>1mzy_A Copper-containing nitrite reductase; mutant M182T, gating mechanism, electron oxidoreductase; 1.46A {Rhodobacter sphaeroides} SCOP: b.6.1.3 b.6.1.3 PDB: 1mzz_A 1n70_A 1zv2_A 2a3t_A 2dws_A 2dwt_A 2dy2_A
Probab=85.43 E-value=1.9 Score=38.07 Aligned_cols=76 Identities=16% Similarity=0.089 Sum_probs=49.8
Q ss_pred ceeeCCEEEEEecCC-----CCceEEecCcccccccCCCCcc-cccCCCCcceEEEcCCceeEEEEEcCCCC-----Ccc
Q 042860 32 SVHVGDTIIFKHKFN-----NSNLYIFKNKNAFNLCNFSQAT-LLTNPNSTSYTWHPSRPGFFYFTFNNGSL-----QTC 100 (235)
Q Consensus 32 tF~VGDtLvF~y~~~-----~HsVv~V~~~~~Y~~Cn~s~p~-~~s~g~st~~~v~L~~~G~~YFiCssg~~-----~HC 100 (235)
+++.||+|++++.+. .|.+.+- .....+.- ... ....|.+-.|.|+++++|+|||-|. .. .|=
T Consensus 67 ~~~~Gd~v~v~~~N~~~~~h~Hg~~~~-~~~~~~~~---~~~~~i~PG~~~~y~f~~~~~Gt~~yH~h--~~~~~~~~~~ 140 (333)
T 1mzy_A 67 IVHEGDYVELTLINPPENTMPHNIDFH-AATGALGG---GGLTLINPGEKVVLRFKATRAGAFVYHCA--PGGPMIPWHV 140 (333)
T ss_dssp EEETTCEEEEEEEECTTCCSCBCCEET-TSCSGGGG---GGGCCBCTTEEEEEEEECCSCEEEEEECC--CSTTHHHHHH
T ss_pred EecCCCEEEEEEEECCCCcccccceec-CCCCCCCC---CceeEeCCCCEEEEEEECCCCEEEEEeec--CCcccchhhh
Confidence 689999999987653 4777642 21111100 011 2444555568888899999999994 33 365
Q ss_pred ccCCceeEEEEecc
Q 042860 101 NKSSQKLSIKVSAV 114 (235)
Q Consensus 101 ~~~GqKl~I~V~~~ 114 (235)
..||...+.|...
T Consensus 141 -~~Gl~G~~iV~~~ 153 (333)
T 1mzy_A 141 -VSGMAGCIMVLPR 153 (333)
T ss_dssp -HTTCEEEEEEECT
T ss_pred -hCCCEEEEEEccC
Confidence 6899999999753
No 52
>3gdc_A Multicopper oxidase; beta sandwich, plasmid, oxidoreductase; 1.80A {Arthrobacter SP}
Probab=84.28 E-value=1.1 Score=38.99 Aligned_cols=77 Identities=14% Similarity=0.054 Sum_probs=48.8
Q ss_pred ceeeCCEEEEEecC-C----CCceEEecCcccccccCC----CC-----cccccCCCCcceEEEcCCceeEEEEEcCCCC
Q 042860 32 SVHVGDTIIFKHKF-N----NSNLYIFKNKNAFNLCNF----SQ-----ATLLTNPNSTSYTWHPSRPGFFYFTFNNGSL 97 (235)
Q Consensus 32 tF~VGDtLvF~y~~-~----~HsVv~V~~~~~Y~~Cn~----s~-----p~~~s~g~st~~~v~L~~~G~~YFiCssg~~ 97 (235)
+++.||++.|.+.+ + .|.+..- ...|+--.. .. .+.+..|....+.|+.+.+|.|.|.|- ..
T Consensus 198 ~v~~Ge~vr~~l~N~g~~~~~H~fHlh--G~~f~v~~~g~~~~~~~~~Dtv~v~pg~~~~v~~~~~~pG~~~~hCH--~~ 273 (288)
T 3gdc_A 198 KVKQHELVRIHLINVLEYDPINSFHIH--GNFFHYYPTGTMLTPSEYTDTISQVQGQRGILELRFPYPGKFMFHAH--KT 273 (288)
T ss_dssp EEETTCCEEEEEEECCCSSSEEEEEET--TCCEEEEETTCCSSCSEEESEEEEETTCEEEEEECCCSCEEEEEECS--SH
T ss_pred ccCCCCEEEEEEEeCCCCCcceeEEEc--CCEEEEEcCCCccCCCceeeEEEeCCCceEEEEEECCCCEEEEEEec--Ch
Confidence 68899999888753 2 1454431 111211000 01 112344444456777789999999995 89
Q ss_pred CccccCCceeEEEEec
Q 042860 98 QTCNKSSQKLSIKVSA 113 (235)
Q Consensus 98 ~HC~~~GqKl~I~V~~ 113 (235)
.|= ++||...++|.+
T Consensus 274 ~H~-~~GM~~~~~V~~ 288 (288)
T 3gdc_A 274 EFA-ELGWMGFFEVSA 288 (288)
T ss_dssp HHH-TTTCEEEEEEEC
T ss_pred HHH-hcCCCEEEEEeC
Confidence 999 999999999864
No 53
>2zoo_A Probable nitrite reductase; electron transfer, electron transport, heme, iron, binding, oxidoreductase, transport; HET: SUC HEM; 1.95A {Pseudoalteromonas haloplanktis}
Probab=83.43 E-value=1.7 Score=39.76 Aligned_cols=79 Identities=13% Similarity=0.166 Sum_probs=49.0
Q ss_pred ceeeCCEEEEEecCC-----CCceEEecCcccccccCCCCcccccCCCCcceEEEcCCceeEEEEEcC-CCCCccccCCc
Q 042860 32 SVHVGDTIIFKHKFN-----NSNLYIFKNKNAFNLCNFSQATLLTNPNSTSYTWHPSRPGFFYFTFNN-GSLQTCNKSSQ 105 (235)
Q Consensus 32 tF~VGDtLvF~y~~~-----~HsVv~V~~~~~Y~~Cn~s~p~~~s~g~st~~~v~L~~~G~~YFiCss-g~~~HC~~~Gq 105 (235)
+++.||+|++++.+. .|++..= --...+. .........|.+..|.|+++++|+|||-|.. ....|= ..||
T Consensus 63 ~v~~Gd~v~v~~~N~l~~~~~~~iH~H-G~~~~dG--~~~~~~i~pg~~~~y~f~~~~~Gt~~yH~H~~~~~~~~-~~Gl 138 (442)
T 2zoo_A 63 RVREGDEIEFNLSNHPSSKMPHNIDLH-AVTGPGG--GAESSFTAPGHTSTFNFKALNPGLYIYHCATAPVGMHI-ANGM 138 (442)
T ss_dssp EEETTCEEEEEEEECTTCSSCBCCEET-TCCSGGG--GGGGCCBCTTCEEEEEEECCSCEEEEEECCCSSHHHHH-HTTC
T ss_pred EEeCCCEEEEEEEECCCCCCCCCEEec-CCcCCCC--CCccEEECCCCEEEEEEEcCCCeEEEEecCCCChHHHH-hCcc
Confidence 688999999987653 4666531 1111110 0000124445555688888999999999931 123555 6899
Q ss_pred eeEEEEecc
Q 042860 106 KLSIKVSAV 114 (235)
Q Consensus 106 Kl~I~V~~~ 114 (235)
...|.|...
T Consensus 139 ~G~~iv~~~ 147 (442)
T 2zoo_A 139 YGLILVEPK 147 (442)
T ss_dssp EEEEEEECT
T ss_pred EEEEEEeCC
Confidence 999999863
No 54
>3gdc_A Multicopper oxidase; beta sandwich, plasmid, oxidoreductase; 1.80A {Arthrobacter SP}
Probab=81.11 E-value=6.3 Score=34.17 Aligned_cols=78 Identities=9% Similarity=0.034 Sum_probs=48.0
Q ss_pred ceeeCCEEEEEecC---CCCceEEecCcccccccCCCC---cccccCCCCcceEEEcCCceeEEEEEcCCCC---Ccccc
Q 042860 32 SVHVGDTIIFKHKF---NNSNLYIFKNKNAFNLCNFSQ---ATLLTNPNSTSYTWHPSRPGFFYFTFNNGSL---QTCNK 102 (235)
Q Consensus 32 tF~VGDtLvF~y~~---~~HsVv~V~~~~~Y~~Cn~s~---p~~~s~g~st~~~v~L~~~G~~YFiCssg~~---~HC~~ 102 (235)
+++.||.|++++.+ ..|++..= .-.+..-+-.. ......|.+-.|.|+.+++|+|||-|. .. .|= .
T Consensus 69 ~~~~Gd~v~v~~~N~~~~~~~iH~H--G~~~~~~DG~p~~~~~~i~PG~~~~y~f~~~~~Gt~~yH~H--~~~~~~~~-~ 143 (288)
T 3gdc_A 69 WAREGDALRIHFTNAGAHPHTIHFH--GVHRATMDGTPGIGAGSIAPGQSFTYEFDATPFGTHLYHCH--QSPLAPHI-A 143 (288)
T ss_dssp EEETTCEEEEEEEECSSSCBCCEES--SCCCGGGSCCTTSTTCSBCTTCEEEEEEECCSCEEEEEECC--CSSHHHHH-H
T ss_pred EEeCCCEEEEEEEeCCCCcccEEec--cccccccCCCCCccceeECCCCEEEEEEEcCCCccEEEEec--CcchHHHH-h
Confidence 68999999988864 23455431 11111101000 012344555568888999999999995 33 355 7
Q ss_pred CCceeEEEEecc
Q 042860 103 SSQKLSIKVSAV 114 (235)
Q Consensus 103 ~GqKl~I~V~~~ 114 (235)
.||.-.|.|...
T Consensus 144 ~Gl~G~liV~~~ 155 (288)
T 3gdc_A 144 KGLYGGFIVEPK 155 (288)
T ss_dssp TTCEEEEEEECS
T ss_pred CcCeEEEEEeCC
Confidence 899999999764
No 55
>1cyx_A CYOA; electron transport; 2.30A {Escherichia coli} SCOP: b.6.1.2 PDB: 1cyw_A
Probab=80.10 E-value=2.5 Score=36.18 Aligned_cols=32 Identities=16% Similarity=0.236 Sum_probs=25.7
Q ss_pred cceEEEcCCceeEEEEEcCCCCCccccC---CceeEEEEe
Q 042860 76 TSYTWHPSRPGFFYFTFNNGSLQTCNKS---SQKLSIKVS 112 (235)
Q Consensus 76 t~~~v~L~~~G~~YFiCssg~~~HC~~~---GqKl~I~V~ 112 (235)
+.+.++.+++|.||..| ..-| .. .|++.|.|.
T Consensus 81 n~l~~~~~~pG~y~g~C----sE~C-G~~Hs~M~~~v~vv 115 (205)
T 1cyx_A 81 TRLHLIANEPGTYDGIC----AEIC-GPGHSGMKFKAIAT 115 (205)
T ss_dssp EEEEECCSSSEEEEEEE----CSCC-STTSTTCCEEEEEE
T ss_pred EEEEEEeCCCeEEEEEc----cccc-ccchhhceEEEEEE
Confidence 44677889999999999 4567 44 599999988
No 56
>3cg8_A Laccase; oxidoreductase, multicopper blue protein; HET: PG4; 2.68A {Streptomyces coelicolor}
Probab=77.37 E-value=5.6 Score=35.64 Aligned_cols=78 Identities=8% Similarity=0.062 Sum_probs=48.5
Q ss_pred ceeeCCEEEEEecC---CCCceEEecCcccccccC---CC---------CcccccCCCCcceEEEc---CCceeEEEEEc
Q 042860 32 SVHVGDTIIFKHKF---NNSNLYIFKNKNAFNLCN---FS---------QATLLTNPNSTSYTWHP---SRPGFFYFTFN 93 (235)
Q Consensus 32 tF~VGDtLvF~y~~---~~HsVv~V~~~~~Y~~Cn---~s---------~p~~~s~g~st~~~v~L---~~~G~~YFiCs 93 (235)
+++.||+++|.+.+ ..|.+.. -...|+.-. .. +.+.+..|....+.|+. +.+|.|+|-|-
T Consensus 212 ~v~~Ge~vri~l~N~g~~~HpfHl--HGh~f~v~~~G~~~~p~~~~~~~Dtv~v~PG~~~~v~~~~~~~~~pG~w~~HCH 289 (343)
T 3cg8_A 212 EATVGDRVEIVMITHGEYYHTFHM--HGHRWADNRTGILTGPDDPSRVIDNKITGPADSFGFQIIAGEGVGAGAWMYHCH 289 (343)
T ss_dssp EEETTCEEEEEEEEESSCCEEEEE--TTCCEESSSSSSCCSTTCCCCEESEEEECTTCEEEEEEETTTTTCSEEEEEEEC
T ss_pred EeCCCCEEEEEEEcCCccccccEe--cCcEEEEeccCcccCCCCcccceeeEEeCCCCEEEEEEEECCCCCCeeEEEeCC
Confidence 68999999888753 3455543 111111100 00 01113334333466664 68999999995
Q ss_pred CCCCCccccCCceeEEEEecc
Q 042860 94 NGSLQTCNKSSQKLSIKVSAV 114 (235)
Q Consensus 94 sg~~~HC~~~GqKl~I~V~~~ 114 (235)
...|= ..||...+.|...
T Consensus 290 --i~~H~-~~GM~g~~~V~~~ 307 (343)
T 3cg8_A 290 --VQSHS-DMGMVGLFLVKKP 307 (343)
T ss_dssp --SHHHH-HTTCEEEEEEECT
T ss_pred --CHHHH-hccCcEEEEEecC
Confidence 88998 9999999999864
No 57
>2bw4_A Copper-containing nitrite reductase; oxidoreductase, denitrification, catalysis, enzyme mechanism, nitrate assimilation; 0.90A {Achromobacter cycloclastes} SCOP: b.6.1.3 b.6.1.3 PDB: 1nib_A 1nia_A 1nid_A 1nie_A 1nic_A 1nif_A 2bw5_A 2bwd_A 2bwi_A 2nrd_A 2y1a_A 1kcb_A 1rzp_A* 1rzq_A 2avf_A 1as6_A 1aq8_A 1as7_A 1as8_A 2afn_A ...
Probab=77.23 E-value=5.4 Score=35.19 Aligned_cols=76 Identities=16% Similarity=0.159 Sum_probs=48.9
Q ss_pred ceeeCCEEEEEecCC-----CCceEEecCcccccccCCCCcc-cccCCCCcceEEEcCCceeEEEEEcCCCC----Cccc
Q 042860 32 SVHVGDTIIFKHKFN-----NSNLYIFKNKNAFNLCNFSQAT-LLTNPNSTSYTWHPSRPGFFYFTFNNGSL----QTCN 101 (235)
Q Consensus 32 tF~VGDtLvF~y~~~-----~HsVv~V~~~~~Y~~Cn~s~p~-~~s~g~st~~~v~L~~~G~~YFiCssg~~----~HC~ 101 (235)
+++.||+|++++.+. .|++.+- .....+ + .... ....|.+-.|.|+++++|+|||-|. .. .|=
T Consensus 74 ~v~~Gd~v~v~~~N~~~~~~~hg~~~~-~~~~~~--~-~~~~~~i~PG~~~~y~~~~~~~Gt~wyH~h--~~~~~~~~~- 146 (340)
T 2bw4_A 74 VVHENDYVELRLINPDTNTLLHNIDFH-AATGAL--G-GGALTQVNPGEETTLRFKATKPGVFVYHCA--PEGMVPWHV- 146 (340)
T ss_dssp EEETTCEEEEEEEECTTCCSCBCCEET-TSCSGG--G-GGGGCCBCTTEEEEEEEECCSCEEEEEECC--CTTCHHHHH-
T ss_pred EEcCCCEEEEEEEeCCCCCccCcceeC-CcCCCC--C-CccceEeCCCCEEEEEEECCCCeEEEEEcC--CCCchhhHH-
Confidence 688999999988653 4776642 111100 0 0111 2344544568888899999999994 33 255
Q ss_pred cCCceeEEEEecc
Q 042860 102 KSSQKLSIKVSAV 114 (235)
Q Consensus 102 ~~GqKl~I~V~~~ 114 (235)
..||.-.+.|...
T Consensus 147 ~~Gl~G~~iV~~~ 159 (340)
T 2bw4_A 147 TSGMNGAIMVLPR 159 (340)
T ss_dssp HTTCEEEEEEECT
T ss_pred hCcCEEEEEEccC
Confidence 6899999988763
No 58
>3kw8_A Laccase, putative copper oxidase; two-domain laccase, oxidoreductase, multicopper blue protein; HET: PG4 PGE; 2.29A {Streptomyces coelicolor} PDB: 4gxf_A* 4gy4_A*
Probab=76.64 E-value=5.7 Score=34.26 Aligned_cols=78 Identities=8% Similarity=0.039 Sum_probs=48.3
Q ss_pred ceeeCCEEEEEecC---CCCceEEecCcccccccC------CC------CcccccCCCCcceEEEcC---CceeEEEEEc
Q 042860 32 SVHVGDTIIFKHKF---NNSNLYIFKNKNAFNLCN------FS------QATLLTNPNSTSYTWHPS---RPGFFYFTFN 93 (235)
Q Consensus 32 tF~VGDtLvF~y~~---~~HsVv~V~~~~~Y~~Cn------~s------~p~~~s~g~st~~~v~L~---~~G~~YFiCs 93 (235)
+++.||+++|.+.+ ..|++.. -...|..=. .. +.+.+..+....+.++.+ .+|.++|-|-
T Consensus 171 ~v~~G~~vri~l~N~~~~~Hp~Hl--HG~~f~v~~~G~~~~p~~~~~~~Dtv~v~pg~~~~~~~~~~~~~npG~w~~HCH 248 (276)
T 3kw8_A 171 EATVGDRVEIVMITHGEYYHTFHM--HGHRWADNRTGILTGPDDPSRVIDNKITGPADSFGFQIIAGEGVGAGAWMYHCH 248 (276)
T ss_dssp EEETTCEEEEEEEEESSCCEEEEE--TTCCEESSSSSSCCSTTCCCCEESEEEECTTCEEEEEEETTTTTCSEEEEEEEC
T ss_pred EEecCCEEEEEEecCCCcceeEEE--ccceeEEeccCccCCCcccccCCccEEeCCCceEEEEEEeccCCCCCeEEEECC
Confidence 78999999887753 2355443 111111100 00 011233343334666666 5999999995
Q ss_pred CCCCCccccCCceeEEEEecc
Q 042860 94 NGSLQTCNKSSQKLSIKVSAV 114 (235)
Q Consensus 94 sg~~~HC~~~GqKl~I~V~~~ 114 (235)
...|= .+||...+.|...
T Consensus 249 --~~~H~-~~GM~g~~~V~~~ 266 (276)
T 3kw8_A 249 --VQSHS-DMGMVGLFLVKKP 266 (276)
T ss_dssp --SHHHH-HTTCEEEEEEECT
T ss_pred --CchHh-hCCCeEEEEEeCC
Confidence 78898 9999999999874
No 59
>1yel_A AT1G16640; CESG, protein structure initiative, structural genomics, center for eukaryotic structural genomics, unknown function; NMR {Arabidopsis thaliana} SCOP: b.142.1.2
Probab=73.28 E-value=1.5 Score=32.77 Aligned_cols=16 Identities=13% Similarity=0.160 Sum_probs=13.9
Q ss_pred CceeeCCEEEEEecCC
Q 042860 31 PSVHVGDTIIFKHKFN 46 (235)
Q Consensus 31 ptF~VGDtLvF~y~~~ 46 (235)
...++||.|+|+|..+
T Consensus 76 ~~L~~GD~lvF~~~~~ 91 (104)
T 1yel_A 76 NNLEDGKYLQFIYDRD 91 (104)
T ss_dssp HTCCTTCEEEEEECSS
T ss_pred cCCCCCCEEEEEEcCC
Confidence 4789999999999864
No 60
>1oe1_A Dissimilatory copper-containing nitrite reductase; denitrification; HET: PG4; 1.04A {Alcaligenes xylosoxidans} SCOP: b.6.1.3 b.6.1.3 PDB: 1oe3_A* 2xwz_A* 2vn3_A 2zon_A* 1haw_A 1hau_A* 2vm4_A* 2vw4_A* 2vw6_A* 2vw7_A* 2vm3_A* 1oe2_A* 2jl0_A* 2xx1_A 2xxg_A* 2xxf_A* 1gs8_A 1wa1_X* 1wa2_X* 2jl3_A* ...
Probab=71.90 E-value=26 Score=30.64 Aligned_cols=95 Identities=14% Similarity=0.216 Sum_probs=52.3
Q ss_pred ceEEEecCCCC----CCCCceeeCCEEEEEecC----------CCCceEEecCcccccccCC--CCcccccCCCCcceEE
Q 042860 17 SATIFVDGISE----WKNPSVHVGDTIIFKHKF----------NNSNLYIFKNKNAFNLCNF--SQATLLTNPNSTSYTW 80 (235)
Q Consensus 17 A~~~~VGg~~G----W~~ptF~VGDtLvF~y~~----------~~HsVv~V~~~~~Y~~Cn~--s~p~~~s~g~st~~~v 80 (235)
...+++-|..+ |..-+++.|+++.|.+.. +.|....+ ....+..=-. .+.+.+..|....+.+
T Consensus 209 ~~~~liNG~~~~~~~~~~l~v~~GervRlin~~~~~~~~~~~i~gh~~~Vi-~DG~~~~p~~~~~dtv~i~pGer~dvlv 287 (336)
T 1oe1_A 209 PSHIVFNGKVGALTGANALTAKVGETVLLIHSQANRDTRPHLIGGHGDWVW-ETGKFANPPQRDLETWFIRGGSAGAALY 287 (336)
T ss_dssp CSEEEETTSTTTTSGGGCEEEETTCEEEEEEEESSSCBCEEETTCCEEEEE-TTCCTTSCCEEEESBCCBCTTEEEEEEE
T ss_pred CCEEEECCeeccCCCCcceEcCCCCEEEEEecCCCCccceEEECCcCceEe-CCCcCcCCccccceEEEECCCCcEEEEE
Confidence 35677766542 222378899998875432 12332222 1111100000 0011233343334567
Q ss_pred EcCCceeEEEEEcCCCCCccccCCceeEEEEecc
Q 042860 81 HPSRPGFFYFTFNNGSLQTCNKSSQKLSIKVSAV 114 (235)
Q Consensus 81 ~L~~~G~~YFiCssg~~~HC~~~GqKl~I~V~~~ 114 (235)
+.+++|.|+|.|. ...|+..+||...|+|...
T Consensus 288 ~~~~pG~y~~~~h--~~~~~~~~G~~~~~~V~~~ 319 (336)
T 1oe1_A 288 TFKQPGVYAYLNH--NLIEAFELGAAGHIKVEGK 319 (336)
T ss_dssp ECCSCEEEEEEES--SHHHHHTTSCEEEEEEESC
T ss_pred EcCCCceEEEEec--hhhccccCCCeEEEEECCC
Confidence 7889999999994 5556546899999999863
No 61
>2j5w_A Ceruloplasmin, ferroxidase; oxidoreductase, plasma protein, copper transport, copper, transport, polymorphism, glycoprotein, multi-copper oxidase; HET: NAG; 2.80A {Homo sapiens} SCOP: b.6.1.3 b.6.1.3 b.6.1.3 b.6.1.3 b.6.1.3 PDB: 1kcw_A*
Probab=67.74 E-value=11 Score=38.88 Aligned_cols=87 Identities=15% Similarity=0.191 Sum_probs=58.0
Q ss_pred EEEecCCCCCCCC--ceeeCCEEEEEecC-----CCCceEEec-----CcccccccCCCCcccccCCCCcceEEEcCCce
Q 042860 19 TIFVDGISEWKNP--SVHVGDTIIFKHKF-----NNSNLYIFK-----NKNAFNLCNFSQATLLTNPNSTSYTWHPSRPG 86 (235)
Q Consensus 19 ~~~VGg~~GW~~p--tF~VGDtLvF~y~~-----~~HsVv~V~-----~~~~Y~~Cn~s~p~~~s~g~st~~~v~L~~~G 86 (235)
-+.|-|---|..| ++..||.|+++..+ ..|++.+-- +...+++|. +..+.+.+|.++.+..|
T Consensus 620 ~~~iNG~~~g~~P~l~~~~gd~v~~~v~~~g~~~~~Hgl~~~g~t~~~dG~~~~t~~------i~pg~~~t~~~~~~~~G 693 (1065)
T 2j5w_A 620 MHSMNGFMYGNQPGLTMCKGDSVVWYLFSAGNEADVHGIYFSGNTYLWRGERRDTAN------LFPQTSLTLHMWPDTEG 693 (1065)
T ss_dssp EEEETTBCTTCCCCCEEETTCCEEEEEECCCSTTCCEEEEETTCCEEETTEEESEEE------ECTTCEEEEEECCCSCE
T ss_pred EEEEeeEecCCCCceEEeCCCEEEEEEEcCCCcceEEeeEEeCCceeecCeecceEe------ecCCceEEEEEecCCCe
Confidence 3455444335444 78999999988653 457776521 122344555 33333445778888999
Q ss_pred eEEEEEcCCCCCccccCCceeEEEEecc
Q 042860 87 FFYFTFNNGSLQTCNKSSQKLSIKVSAV 114 (235)
Q Consensus 87 ~~YFiCssg~~~HC~~~GqKl~I~V~~~ 114 (235)
++|+-|. +..|= ..||+..+.|...
T Consensus 694 t~~~h~h--~~~~~-~~Gm~g~~~V~~~ 718 (1065)
T 2j5w_A 694 TFNVECL--TTDHY-TGGMKQKYTVNQC 718 (1065)
T ss_dssp EEEEEEC--SHHHH-HTTCEEEEEEECC
T ss_pred EEEEecC--CCccc-CCCcEEEEEEcCC
Confidence 9999995 67777 8999999999764
No 62
>3hb3_B Cytochrome C oxidase subunit 2; electron transfer, proton transfer, proton pumping, membrane protein, cell inner membrane, cell membrane, copper; HET: HEA LDA LMT; 2.25A {Paracoccus denitrificans} PDB: 1ar1_B* 3ehb_B* 1qle_B*
Probab=66.98 E-value=5.2 Score=35.94 Aligned_cols=33 Identities=9% Similarity=0.234 Sum_probs=25.8
Q ss_pred cceEEEcCCceeEEEEEcCCCCCccccC---CceeEEEEec
Q 042860 76 TSYTWHPSRPGFFYFTFNNGSLQTCNKS---SQKLSIKVSA 113 (235)
Q Consensus 76 t~~~v~L~~~G~~YFiCssg~~~HC~~~---GqKl~I~V~~ 113 (235)
+...++.+++|.||..| ..-| .. .|++.|.|.+
T Consensus 229 n~~~~~~~~~G~y~g~C----sE~C-G~~Hs~M~~~v~vvs 264 (298)
T 3hb3_B 229 AQLWFSVDQEGVYFGQC----SELC-GINHAYMPIVVKAVS 264 (298)
T ss_dssp EEEEEECSSSEEEEECC----CSCC-STTTTSCCEEEEEEC
T ss_pred EEEEEEeCCCEEEEEEc----cccc-CcCccCCeeEEEEEc
Confidence 44577889999999999 4567 44 5899998875
No 63
>3g5w_A Multicopper oxidase type 1; two domain, laccase, nitrifier, metal B protein; 1.90A {Nitrosomonas europaea}
Probab=66.96 E-value=4.9 Score=35.60 Aligned_cols=79 Identities=8% Similarity=0.053 Sum_probs=45.2
Q ss_pred ceeeCCEEEEEecCC---CCceEEecCcccccc-cCCCC-c----ccccCCCCcceEEEcCCceeEEEEEcCCCCCccc-
Q 042860 32 SVHVGDTIIFKHKFN---NSNLYIFKNKNAFNL-CNFSQ-A----TLLTNPNSTSYTWHPSRPGFFYFTFNNGSLQTCN- 101 (235)
Q Consensus 32 tF~VGDtLvF~y~~~---~HsVv~V~~~~~Y~~-Cn~s~-p----~~~s~g~st~~~v~L~~~G~~YFiCssg~~~HC~- 101 (235)
+++.||+|++++.+. .|++..- .-.+.. ..... + .....|.+-+|.|+.+++|+|||-|... .....
T Consensus 37 ~~~~Gd~v~v~~~N~l~~~~siH~H--G~~~~~~~~~DG~p~~t~~~i~PG~~~~y~f~~~~~Gt~wYH~H~~-~~~~~~ 113 (318)
T 3g5w_A 37 HVMEGDDVTVNVTNMTTLPHTIHWH--GMLQRGTWQSDGVPHATQHAIEPGDTFTYKFKAEPAGTMWYHCHVN-VNEHVT 113 (318)
T ss_dssp EEETTCEEEEEEEECSSSCBCCEEE--TCCCTTCGGGSCCBTTTBCCBCTTCEEEEEEECCSCEEEEEECCSS-HHHHHH
T ss_pred EEeCCCEEEEEEEeCCCCceeEEec--CcCCCCCcccCCCcccccccCCCCCEEEEEEEcCCCEEEEEEccCC-hhhhhc
Confidence 689999999988642 2444321 000110 00000 0 0134455556889999999999998421 11110
Q ss_pred cCCceeEEEEec
Q 042860 102 KSSQKLSIKVSA 113 (235)
Q Consensus 102 ~~GqKl~I~V~~ 113 (235)
..||.-.|.|..
T Consensus 114 ~~Gl~G~lIV~~ 125 (318)
T 3g5w_A 114 MRGMWGPLIVEP 125 (318)
T ss_dssp HSCCEEEEEEEC
T ss_pred cCCCEEEEEEcC
Confidence 169998998875
No 64
>2gsm_B Cytochrome C oxidase subunit 2; transmembrane protein complex, oxidoreductase; HET: DMU HEA TRD; 2.00A {Rhodobacter sphaeroides} SCOP: b.6.1.2 f.17.2.1 PDB: 3dtu_B* 3fye_B* 3fyi_B* 3omi_B* 3om3_B* 3oma_B* 3omn_B* 1m56_B* 1m57_B*
Probab=64.97 E-value=6.2 Score=34.59 Aligned_cols=33 Identities=21% Similarity=0.420 Sum_probs=25.7
Q ss_pred cceEEEcCCceeEEEEEcCCCCCccccCC---ceeEEEEec
Q 042860 76 TSYTWHPSRPGFFYFTFNNGSLQTCNKSS---QKLSIKVSA 113 (235)
Q Consensus 76 t~~~v~L~~~G~~YFiCssg~~~HC~~~G---qKl~I~V~~ 113 (235)
+...++.+++|.||..| ..-| ..| |++.|.|.+
T Consensus 211 n~~~~~~~~~G~y~g~C----se~C-G~~H~~M~~~v~vv~ 246 (262)
T 2gsm_B 211 AQLWFRAEREGIFFGQC----SELC-GISHAYMPITVKVVS 246 (262)
T ss_dssp EEEEEECCSCEEEEECC----CSCC-STTGGGCCEEEEEEC
T ss_pred eEEEEecCCcEEEEEEC----hHhc-ccCcccCeEEEEEEc
Confidence 34577889999999999 4677 544 888888875
No 65
>2zwn_A Two-domain type laccase; muticopper oxidase, oxidoreductase; 1.70A {Metagenomes}
Probab=63.69 E-value=7.6 Score=34.46 Aligned_cols=79 Identities=14% Similarity=0.153 Sum_probs=44.2
Q ss_pred ceeeCCEEEEEecCC---CCce-----EEecCccccccc-CCCCcccccCCCCcceEEEcCCceeEEEEEcCCCCCcccc
Q 042860 32 SVHVGDTIIFKHKFN---NSNL-----YIFKNKNAFNLC-NFSQATLLTNPNSTSYTWHPSRPGFFYFTFNNGSLQTCNK 102 (235)
Q Consensus 32 tF~VGDtLvF~y~~~---~HsV-----v~V~~~~~Y~~C-n~s~p~~~s~g~st~~~v~L~~~G~~YFiCssg~~~HC~~ 102 (235)
+++.||++++++.+. .+++ .+. .....|.= ..++ .....|.+-.|.|+++++|+|||-|......|= .
T Consensus 38 ~v~~Gd~v~v~v~N~l~~~~siH~HG~~~~-~~~~~DGvp~vtq-~~I~PG~~~~y~f~~~~~Gt~wyH~H~~~~~q~-~ 114 (339)
T 2zwn_A 38 HVQEGDDVIVNVTNNTSLPHTIHWHGVHQK-GTWRSDGVPGVTQ-QPIEAGDSYTYKFKADRIGTLWYHCHVNVNEHV-G 114 (339)
T ss_dssp EEETTCEEEEEEEEESSSCBCCEEETCCCT-TCGGGSCCBTTTB-CCBCTTCEEEEEEECCSCEEEEEECCSSHHHHT-T
T ss_pred EEECCCEEEEEEEECCCCCccEEeCCCCcC-CCcccCCCCcccc-CccCCCCeEEEEEECCCCEEEEEEecCCchhhh-h
Confidence 688999999987642 1222 221 11001100 0000 013344444688888999999999842111233 4
Q ss_pred -CCceeEEEEec
Q 042860 103 -SSQKLSIKVSA 113 (235)
Q Consensus 103 -~GqKl~I~V~~ 113 (235)
.||.-.+.|..
T Consensus 115 ~~Gl~G~liV~p 126 (339)
T 2zwn_A 115 VRGMWGPLIVDP 126 (339)
T ss_dssp TSCCEEEEEEEC
T ss_pred cCCceEeEEecC
Confidence 78988888865
No 66
>1aoz_A Ascorbate oxidase; oxidoreductase(oxygen acceptor); HET: NAG; 1.90A {Cucurbita pepo var} SCOP: b.6.1.3 b.6.1.3 b.6.1.3 PDB: 1aso_A* 1asp_A* 1asq_A*
Probab=63.23 E-value=23 Score=33.53 Aligned_cols=78 Identities=12% Similarity=0.068 Sum_probs=47.7
Q ss_pred ceeeCCEEEEEecCCC----CceEEecCcccccc-cCCCC-cc----cccCCCCcceEEEcCCceeEEEEEcCCCCCccc
Q 042860 32 SVHVGDTIIFKHKFNN----SNLYIFKNKNAFNL-CNFSQ-AT----LLTNPNSTSYTWHPSRPGFFYFTFNNGSLQTCN 101 (235)
Q Consensus 32 tF~VGDtLvF~y~~~~----HsVv~V~~~~~Y~~-Cn~s~-p~----~~s~g~st~~~v~L~~~G~~YFiCssg~~~HC~ 101 (235)
+++.||+|+.++.+.. ++|.- -.-.... ....+ +. -...|.+-+|+|+++++|+|||=|. ...+=
T Consensus 37 ~~~~GD~v~v~v~N~l~~~~tsiHw--HGl~~~~~~~~DGv~~vtq~~I~PG~s~tY~f~~~~~GT~wYHsH--~~~q~- 111 (552)
T 1aoz_A 37 RANAGDSVVVELTNKLHTEGVVIHW--HGILQRGTPWADGTASISQCAINPGETFFYNFTVDNPGTFFYHGH--LGMQR- 111 (552)
T ss_dssp EEETTCEEEEEEEECCSSCCBCEEE--ETCCCTTCGGGSCCBTTTBCCBCTTCEEEEEEECCSCEEEEEEEC--STTTG-
T ss_pred EEeCCCEEEEEEEeCCCCCCeeEEe--CCCccCCCcccCCCcccccCCcCCCCeEEEEEECCCCEEEEEEEC--chhHH-
Confidence 6899999999886532 23321 0000000 00111 00 1233444468888999999999995 45555
Q ss_pred cCCceeEEEEecc
Q 042860 102 KSSQKLSIKVSAV 114 (235)
Q Consensus 102 ~~GqKl~I~V~~~ 114 (235)
..|+.-.|.|...
T Consensus 112 ~~Gl~G~liV~~~ 124 (552)
T 1aoz_A 112 SAGLYGSLIVDPP 124 (552)
T ss_dssp GGTCEEEEEEECC
T ss_pred hccCeeeEEEeCC
Confidence 6899999999874
No 67
>1v54_B Cytochrome C oxidase polypeptide II; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: b.6.1.2 f.17.2.1 PDB: 1oco_B* 1occ_B* 1ocz_B* 1ocr_B* 1v55_B* 2dyr_B* 2dys_B* 2eij_B* 2eik_B* 2eil_B* 2eim_B* 2ein_B* 2occ_B* 2y69_B* 2ybb_M* 2zxw_B* 3abk_B* 3abl_B* 3abm_B* 3ag1_B* ...
Probab=63.21 E-value=6.3 Score=33.86 Aligned_cols=32 Identities=25% Similarity=0.490 Sum_probs=24.9
Q ss_pred ceEEEcCCceeEEEEEcCCCCCccccCC---ceeEEEEec
Q 042860 77 SYTWHPSRPGFFYFTFNNGSLQTCNKSS---QKLSIKVSA 113 (235)
Q Consensus 77 ~~~v~L~~~G~~YFiCssg~~~HC~~~G---qKl~I~V~~ 113 (235)
...++.+++|.||..| ..-| ..| |++.|.|.+
T Consensus 181 ~~~~~~~~~G~y~g~C----se~C-G~~Hs~M~~~v~vv~ 215 (227)
T 1v54_B 181 QTTLMSSRPGLYYGQC----SEIC-GSNHSFMPIVLELVP 215 (227)
T ss_dssp EEEECCSSCEEEEECC----CSCC-STTGGGCCEEEEEEC
T ss_pred EEEEecCCcEEEEEEe----hhhc-ccccccCeEEEEEEc
Confidence 4567789999999999 4577 554 888888765
No 68
>4i1k_A B3 domain-containing transcription factor VRN1; B3 domain beta-barrel, DNA binding protein; 1.60A {Arabidopsis thaliana}
Probab=59.56 E-value=4.8 Score=32.20 Aligned_cols=21 Identities=19% Similarity=0.409 Sum_probs=16.8
Q ss_pred CCCCC----CceeeCCEEEEEecCC
Q 042860 26 SEWKN----PSVHVGDTIIFKHKFN 46 (235)
Q Consensus 26 ~GW~~----ptF~VGDtLvF~y~~~ 46 (235)
.||.. ..+++||.++|++...
T Consensus 106 ~GW~~Fv~dn~L~~GD~cvFeli~~ 130 (146)
T 4i1k_A 106 QGWYEFTLENNLGEGDVCVFELLRT 130 (146)
T ss_dssp TTHHHHHHHTTCCTTCEEEEEECSS
T ss_pred CchHHHHHHcCCCCCCEEEEEEecC
Confidence 56652 5899999999999864
No 69
>1kbv_A ANIA, major outer membrane protein PAN 1; ANIA[NO2-], oxidoreductase; 1.95A {Neisseria gonorrhoeae} SCOP: b.6.1.3 b.6.1.3 PDB: 1kbw_A
Probab=59.28 E-value=13 Score=32.84 Aligned_cols=42 Identities=14% Similarity=0.147 Sum_probs=30.2
Q ss_pred ccCCCCcceEEEcCCceeEEEEEcCCCCCccccCCceeEEEEec
Q 042860 70 LTNPNSTSYTWHPSRPGFFYFTFNNGSLQTCNKSSQKLSIKVSA 113 (235)
Q Consensus 70 ~s~g~st~~~v~L~~~G~~YFiCssg~~~HC~~~GqKl~I~V~~ 113 (235)
+..|....+.|+.+++|.|+|.|. ...||...||...|.|..
T Consensus 266 l~pGer~dv~v~~~~pG~y~l~~h--~~~~~~~~g~~a~l~~~g 307 (327)
T 1kbv_A 266 VPAGGSAIVEFKVDIPGNYTLVDH--SIFRAFNKGALGQLKVEG 307 (327)
T ss_dssp ECTTEEEEEEEEECSCEEEEEEES--STHHHHHSSCEEEEEEES
T ss_pred ECCCCEEEEEEEeCCCeEEEEEec--cccccccCCcEEEEEECC
Confidence 444443345677789999999995 677864578888888865
No 70
>2uxt_A Protein SUFI, SUFI; oxidoreductase, periplasmic, cupredoxin-like, FTS mutant suppressor; 1.90A {Escherichia coli} PDB: 2uxv_A
Probab=58.65 E-value=11 Score=34.90 Aligned_cols=74 Identities=8% Similarity=-0.034 Sum_probs=46.5
Q ss_pred ceeeCCEEEEEecCCC---CceEE----ecCc-ccccccCCCCcccccCCCCcceEEEcCC-ceeEEEEEcCCC----CC
Q 042860 32 SVHVGDTIIFKHKFNN---SNLYI----FKNK-NAFNLCNFSQATLLTNPNSTSYTWHPSR-PGFFYFTFNNGS----LQ 98 (235)
Q Consensus 32 tF~VGDtLvF~y~~~~---HsVv~----V~~~-~~Y~~Cn~s~p~~~s~g~st~~~v~L~~-~G~~YFiCssg~----~~ 98 (235)
+++.||+|+.++.++. ++|.- +... ++.-.|. ...|.+-.|+|++++ +|+|||=|- . ..
T Consensus 53 ~~~~Gd~v~v~~~N~l~~~tsiHwHG~~~~~~~DG~~~~~------i~PG~~~~Y~f~~~~~~GT~wYH~H--~~~~t~~ 124 (451)
T 2uxt_A 53 RVWKGDDVKLIYSNRLTENVSMTVAGLQVPGPLMGGPARM------MSPNADWAPVLPIRQNAATLWYHAN--TPNRTAQ 124 (451)
T ss_dssp EEETTCEEEEEEEECSSSCBCEEEETCCCCGGGSCSGGGC------BCTTCEECCEEECCSCSEEEEEEEC--CTTTHHH
T ss_pred EEeCCCEEEEEEEECCCCCccEEECCccCCCCCCCCCcCc------CCCCCeEEEEEEcCCCCcceEEecC--CCCchhh
Confidence 6899999999987532 33321 1111 0011122 334444568899886 999999994 3 23
Q ss_pred ccccCCceeEEEEecc
Q 042860 99 TCNKSSQKLSIKVSAV 114 (235)
Q Consensus 99 HC~~~GqKl~I~V~~~ 114 (235)
|= ..|+--.+.|...
T Consensus 125 q~-~~Gl~G~liV~~~ 139 (451)
T 2uxt_A 125 QV-YNGLAGMWLVEDE 139 (451)
T ss_dssp HH-HTTCEEEEEEECH
T ss_pred hH-hhcceEEEEEecC
Confidence 44 5899999999864
No 71
>3g5w_A Multicopper oxidase type 1; two domain, laccase, nitrifier, metal B protein; 1.90A {Nitrosomonas europaea}
Probab=57.41 E-value=18 Score=31.81 Aligned_cols=41 Identities=7% Similarity=0.079 Sum_probs=29.3
Q ss_pred ccCCCCcceEEEcCCceeEEEEEcCCCCCccccC------CceeEEEEec
Q 042860 70 LTNPNSTSYTWHPSRPGFFYFTFNNGSLQTCNKS------SQKLSIKVSA 113 (235)
Q Consensus 70 ~s~g~st~~~v~L~~~G~~YFiCssg~~~HC~~~------GqKl~I~V~~ 113 (235)
+..|....+.|+.+.+|.+.|-|- ...|- .+ ||...|.|..
T Consensus 230 l~pger~~v~~~a~~pG~w~~hCH--~~~H~-~~g~~~~~Gm~~~i~~~g 276 (318)
T 3g5w_A 230 IGPGERYDVILNMDNPGLWMIHDH--VDTHT-TNGDKPDGGIMTTIEYEE 276 (318)
T ss_dssp ECTTCEEEEEEECCSCSEEEEEES--SGGGS-CBTTBSSCBSEEEEEETT
T ss_pred ECCCCEEEEEEECCCCeeEEEEec--cHHHh-hccCcCCCCCEEEEEECC
Confidence 444544456777899999999995 78888 64 5666666654
No 72
>2q9o_A Laccase-1; multicopper oxidase, 2-OXOH oxidoreductase; HET: OHI NAG MAN GOL; 1.30A {Melanocarpus albomyces} SCOP: b.6.1.3 b.6.1.3 b.6.1.3 PDB: 3fu7_A* 3fu8_A* 3fu7_B* 1gw0_A* 2ih9_A* 2ih8_A* 3fu9_A* 3qpk_A* 3dkh_A* 3pps_A*
Probab=54.75 E-value=23 Score=33.70 Aligned_cols=77 Identities=12% Similarity=0.116 Sum_probs=47.2
Q ss_pred ceeeCCEEEEEecCCC----CceEEecCccccc-ccCCCCcc-----cccC-CCCcceEEEcCCceeEEEEEcCCCCCcc
Q 042860 32 SVHVGDTIIFKHKFNN----SNLYIFKNKNAFN-LCNFSQAT-----LLTN-PNSTSYTWHPSRPGFFYFTFNNGSLQTC 100 (235)
Q Consensus 32 tF~VGDtLvF~y~~~~----HsVv~V~~~~~Y~-~Cn~s~p~-----~~s~-g~st~~~v~L~~~G~~YFiCssg~~~HC 100 (235)
+++.||+|+.++.++. ++|.- -.-... .....+.- -... |.+-.|+|+++++|+|||=|. ...|=
T Consensus 70 ~~~~GD~v~v~v~N~l~~~~tsiHw--HG~~~~~~~~~DG~~~~tq~~I~P~G~~~~Y~f~~~q~GT~wYH~H--~~~q~ 145 (559)
T 2q9o_A 70 VANWGDTVEVTVINNLVTNGTSIHW--HGIXQKDTNLHDGANGVTECPIPPKGGQRTYRWRARQYGTSWYHSH--FSAQY 145 (559)
T ss_dssp EEETTCEEEEEEEEECSSCCBCEEE--ETCCCTTCGGGSCCBTTTBCCBCTTTEEEEEEEECCSCEEEEEEEC--STTGG
T ss_pred EEeCCCEEEEEEEeCCCCCCceEEc--CCCccCCCCCcCCCCccccCccCCCCCeEEEEEECCCCEEEEEEEc--ccchh
Confidence 6789999999886532 33332 000000 11111110 0233 555568899999999999995 45566
Q ss_pred ccCCceeEEEEec
Q 042860 101 NKSSQKLSIKVSA 113 (235)
Q Consensus 101 ~~~GqKl~I~V~~ 113 (235)
..||.-.|.|..
T Consensus 146 -~~Gl~G~liV~~ 157 (559)
T 2q9o_A 146 -GNGVVGTIQING 157 (559)
T ss_dssp -GGTCEEEEEEEC
T ss_pred -cCCceEEEEecC
Confidence 689998888875
No 73
>3t6v_A Laccase; beta barrel, oxidoreductase; HET: CBS; 2.00A {Steccherinum ochraceum} PDB: 3t6w_A* 3t6x_A* 3t6z_A* 3t71_A*
Probab=53.29 E-value=38 Score=31.86 Aligned_cols=78 Identities=12% Similarity=0.041 Sum_probs=46.4
Q ss_pred ceeeCCEEEEEecCCCC--------ceEEecCccccc-ccCCCCcc-----cccCCCCcceEEEc-CCceeEEEEEcCCC
Q 042860 32 SVHVGDTIIFKHKFNNS--------NLYIFKNKNAFN-LCNFSQAT-----LLTNPNSTSYTWHP-SRPGFFYFTFNNGS 96 (235)
Q Consensus 32 tF~VGDtLvF~y~~~~H--------sVv~V~~~~~Y~-~Cn~s~p~-----~~s~g~st~~~v~L-~~~G~~YFiCssg~ 96 (235)
+++.||+|+.++.++.. +|.- -.-... .....+.- -...|.+-.|+|++ +++|+|||-|. .
T Consensus 38 ~~~~GD~v~v~v~N~l~~~~~~~~tsiHw--HGl~~~~~~~~DGv~~vtq~pI~PG~sftY~f~~~~~~GT~wYHsH--~ 113 (495)
T 3t6v_A 38 AGNVGDNFQIVTFNQLIECSMLVDTSIHW--HGEFQKGTNWADGPAFITQCPIIVGNSFSYNFNVPGMAGTYWYHSH--L 113 (495)
T ss_dssp EEETTCEEEEEEEECCCCGGGCSCBCEEE--ETCCCTTCGGGSCCBTTTBCCBCTTCEEEEEEECTTCCEEEEEEEC--S
T ss_pred EEECCcEEEEEEEECCCCccCCCceEEEe--CCcccCCCccccCCCccccCCCCCCCeEEEEEEeCCCCceeeeecc--c
Confidence 68999999998865432 2221 000000 11111110 12334444678888 68999999995 4
Q ss_pred CCccccCCceeEEEEecc
Q 042860 97 LQTCNKSSQKLSIKVSAV 114 (235)
Q Consensus 97 ~~HC~~~GqKl~I~V~~~ 114 (235)
..+= ..|+.-.|.|...
T Consensus 114 ~~q~-~~GL~G~lIV~~~ 130 (495)
T 3t6v_A 114 TTQY-CDGLRGPFVVYDP 130 (495)
T ss_dssp TTGG-GGTCEEEEEEECT
T ss_pred hhHH-hcCceEEEEEcCc
Confidence 4555 6899999999753
No 74
>1zpu_A Iron transport multicopper oxidase FET3; ferroxidase, oxidoreduc; HET: NAG BMA MAN NDG; 2.80A {Saccharomyces cerevisiae}
Probab=52.69 E-value=33 Score=32.43 Aligned_cols=78 Identities=9% Similarity=0.115 Sum_probs=47.7
Q ss_pred ceeeCCEEEEEecCCCC----ceEEecCccccc-ccCCCCcc-----cccCCCCcceEEEcC-CceeEEEEEcCCCCCcc
Q 042860 32 SVHVGDTIIFKHKFNNS----NLYIFKNKNAFN-LCNFSQAT-----LLTNPNSTSYTWHPS-RPGFFYFTFNNGSLQTC 100 (235)
Q Consensus 32 tF~VGDtLvF~y~~~~H----sVv~V~~~~~Y~-~Cn~s~p~-----~~s~g~st~~~v~L~-~~G~~YFiCssg~~~HC 100 (235)
+++.||+|+.++.++.. +|.- -.-... .....+.- -...|.+-.|+|+++ ++|+|||-|. ...|=
T Consensus 37 ~~~~Gd~v~v~v~N~l~~~~tsiHw--HG~~~~~~~~~DG~~~vtq~pI~PG~~~~Y~f~~~~~~GT~wYH~H--~~~q~ 112 (534)
T 1zpu_A 37 TVNKGDRVQIYLTNGMNNTNTSMHF--HGLFQNGTASMDGVPFLTQCPIAPGSTMLYNFTVDYNVGTYWYHSH--TDGQY 112 (534)
T ss_dssp EEETTCEEEEEEECCCSSCCBCCEE--ETCCCTTCGGGSCCBTTTBCCBCTTCEEEEEEECSSCCEEEEEECC--SSSGG
T ss_pred EEECCCEEEEEEEeCCCCCCeeEEc--CCcccCCCCcccCCCccccCCcCCCCeEEEEEEeCccceeEEEEEc--Ccccc
Confidence 68899999999876432 2221 000000 11111100 123444456888888 9999999985 45566
Q ss_pred ccCCceeEEEEecc
Q 042860 101 NKSSQKLSIKVSAV 114 (235)
Q Consensus 101 ~~~GqKl~I~V~~~ 114 (235)
..|+.-.|.|...
T Consensus 113 -~~Gl~G~liV~~~ 125 (534)
T 1zpu_A 113 -EDGMKGLFIIKDD 125 (534)
T ss_dssp -GGTCEEEEEEECT
T ss_pred -cCcceeeEEeCCC
Confidence 6899999999874
No 75
>2zoo_A Probable nitrite reductase; electron transfer, electron transport, heme, iron, binding, oxidoreductase, transport; HET: SUC HEM; 1.95A {Pseudoalteromonas haloplanktis}
Probab=50.72 E-value=25 Score=31.89 Aligned_cols=88 Identities=17% Similarity=0.179 Sum_probs=51.1
Q ss_pred eEEEecCCCC-CCC-C--ceeeCCEEEEEecC----CCCceEEecCcccccccCCC--------------CcccccCCCC
Q 042860 18 ATIFVDGISE-WKN-P--SVHVGDTIIFKHKF----NNSNLYIFKNKNAFNLCNFS--------------QATLLTNPNS 75 (235)
Q Consensus 18 ~~~~VGg~~G-W~~-p--tF~VGDtLvF~y~~----~~HsVv~V~~~~~Y~~Cn~s--------------~p~~~s~g~s 75 (235)
..++|-|... +.. + +++.|+.+.|+.-+ ..|++..- .|.+. +.+.+..|..
T Consensus 189 ~~~liNG~~~~~~~~~~l~v~~G~~vrlrliN~~~~~~~~~~i~-------g~~~~vi~~DG~~~~p~~~~~~~l~pg~r 261 (442)
T 2zoo_A 189 DYVVFNGSVGSTTDENSLTAKVGETVRLYIGNGGPNLVSSFHVI-------GEIFDTVYVEGGSLKNHNVQTTLIPAGGA 261 (442)
T ss_dssp SEEEETTSTTTTSGGGCEEEETTCEEEEEEEEEESSCCEEEEEE-------TCCBSEEEGGGSSCEECSBSEEEECTTEE
T ss_pred CEEEECCCcCCCCCCCceEeCCCCEEEEEEEeCCCCCceeeEEc-------CCEEEEEecCCccCCCccceEEEECCCee
Confidence 4566665432 211 1 57789999988754 12444331 23221 0012333433
Q ss_pred cceEEEcCCceeEEEEEcCCCCCccccCCceeEEEEecc
Q 042860 76 TSYTWHPSRPGFFYFTFNNGSLQTCNKSSQKLSIKVSAV 114 (235)
Q Consensus 76 t~~~v~L~~~G~~YFiCssg~~~HC~~~GqKl~I~V~~~ 114 (235)
..+.|+++++|.|+|.|. ...|+...||...+.|...
T Consensus 262 ~~v~v~~~~~G~y~~~~~--~~~~~~~~g~~a~l~v~~~ 298 (442)
T 2zoo_A 262 AIVEFKVEVPGTFILVDH--SIFRAFNKGALAMLKVEGP 298 (442)
T ss_dssp EEEEEECCSCEEEEEEES--STHHHHTTSCEEEEEEESC
T ss_pred EEEEEEcCCCCeEEEEec--ccccccccCceEEEEecCC
Confidence 345677889999999994 5666435788888888764
No 76
>3pxl_A Laccase; 4-copper protein, metal-binding, oxidoreductase, type-2 Cu-D; HET: NAG BMA MAN; 1.20A {Trametes hirsuta} PDB: 3fpx_A* 3v9c_A* 3div_A* 2h5u_A* 2xyb_A* 1kya_A* 1gyc_A* 2qt6_A* 2hrg_A* 2hrh_A* 4a2f_A* 2vdz_A* 4a2d_A* 4a2e_A* 4a2g_A* 4a2h_A* 2ve0_A* 2vds_A* 2hzh_A* 3kw7_A*
Probab=50.63 E-value=44 Score=31.50 Aligned_cols=78 Identities=10% Similarity=0.057 Sum_probs=46.3
Q ss_pred ceeeCCEEEEEecCCC--------CceEEecCccccc-ccCCCCcc-----cccCCCCcceEEEc-CCceeEEEEEcCCC
Q 042860 32 SVHVGDTIIFKHKFNN--------SNLYIFKNKNAFN-LCNFSQAT-----LLTNPNSTSYTWHP-SRPGFFYFTFNNGS 96 (235)
Q Consensus 32 tF~VGDtLvF~y~~~~--------HsVv~V~~~~~Y~-~Cn~s~p~-----~~s~g~st~~~v~L-~~~G~~YFiCssg~ 96 (235)
+++.||+|+.++.++. ++|.- -.-... .....+.- -...|.+-.|+|++ +++|+|||-|. .
T Consensus 37 ~~~~GD~v~V~v~N~l~~~~~~~~tsiHw--HGl~~~~~~~~DGv~~vtq~pI~PG~s~tY~f~~~~~~GT~wYHsH--~ 112 (499)
T 3pxl_A 37 AGNIGDRFQLNVIDNLTNHTMLKSTSIHW--HGFFQHGTNWADGPAFINQCPISPGHSFLYDFQVPDQAGTFWYHSH--L 112 (499)
T ss_dssp EEETTCEEEEEEEECCCCGGGCSCBCEEE--ETCCCTTCGGGSCCBTTTBCCBCTTCEEEEEEECSSCCEEEEEEEC--S
T ss_pred EEeCCCEEEEEEEECCCCccCCCceEEEe--CCcccCCCccccCCCccccCCCCCCCeEEEEEEcCCCCceeeeecc--c
Confidence 6899999998886542 22321 000000 11111110 12334444678888 67999999995 4
Q ss_pred CCccccCCceeEEEEecc
Q 042860 97 LQTCNKSSQKLSIKVSAV 114 (235)
Q Consensus 97 ~~HC~~~GqKl~I~V~~~ 114 (235)
..+= ..|+.-.|.|...
T Consensus 113 ~~q~-~~GL~G~lIV~~~ 129 (499)
T 3pxl_A 113 STQY-CDGLRGPFVVYDP 129 (499)
T ss_dssp TTGG-GGTCEEEEEEECT
T ss_pred hhHH-hccceeEEEEcCC
Confidence 4455 6899999999753
No 77
>3sqr_A Laccase; multicopper oxidase, glycosylation, oxidoreductase; HET: NAG BMA MAN; 1.67A {Botrytis aclada}
Probab=47.40 E-value=55 Score=31.62 Aligned_cols=77 Identities=8% Similarity=0.076 Sum_probs=45.4
Q ss_pred ceeeCCEEEEEecCCCC----ceEEecCccccc-ccCCCCcc-----cccCCCCcceEEEcCCceeEEEEEcCCCCCccc
Q 042860 32 SVHVGDTIIFKHKFNNS----NLYIFKNKNAFN-LCNFSQAT-----LLTNPNSTSYTWHPSRPGFFYFTFNNGSLQTCN 101 (235)
Q Consensus 32 tF~VGDtLvF~y~~~~H----sVv~V~~~~~Y~-~Cn~s~p~-----~~s~g~st~~~v~L~~~G~~YFiCssg~~~HC~ 101 (235)
+++.||+|+.+..++.. +|.- -.-... +....+.- -...|.+-.|+|+++++|+|||=|. ...+=
T Consensus 101 ~~~~GD~v~V~v~N~l~~~~tsIHw--HGl~~~~t~~~DGvp~vTq~pI~PG~sftY~f~~~q~GT~WYHsH--~~~q~- 175 (580)
T 3sqr_A 101 IADWGDNLIIHVTNNLEHNGTSIHW--HGIRQLGSLEYDGVPGVTQCPIAPGDTLTYKFQVTQYGTTWYHSH--FSLQY- 175 (580)
T ss_dssp EEETTCEEEEEEEECCSSCCBCEEE--TTCCCTTCGGGSCCBTTTBCCBCTTCEEEEEEECCCCEEEEEEEC--STTGG-
T ss_pred EEeCCCEEEEEEEECCCCCcceEEe--cccccCCCccccCCCccccCCCCCCCeEEEEEECCCCcceEEeec--ccccc-
Confidence 67889999988765322 2221 000000 01111110 1233444568899999999999995 45555
Q ss_pred cCCceeEEEEec
Q 042860 102 KSSQKLSIKVSA 113 (235)
Q Consensus 102 ~~GqKl~I~V~~ 113 (235)
..|+.-.|.|..
T Consensus 176 ~~GL~G~lIV~~ 187 (580)
T 3sqr_A 176 GDGLFGPLIING 187 (580)
T ss_dssp GGTCEEEEEEEC
T ss_pred cCcCEEEEEeeC
Confidence 589988888875
No 78
>1sdd_A Coagulation factor V; copper-binding protein, cofactor, blood clottin; HET: NAG NDG; 2.80A {Bos taurus} SCOP: b.6.1.3 b.6.1.3
Probab=46.26 E-value=4.1 Score=35.73 Aligned_cols=78 Identities=14% Similarity=0.050 Sum_probs=33.5
Q ss_pred ceeeCCEEEEEecCC-----CCceEEecCccccccc-CCCCcccccCCCCcceEEEcCCceeEEEEEcCCCCCccccCCc
Q 042860 32 SVHVGDTIIFKHKFN-----NSNLYIFKNKNAFNLC-NFSQATLLTNPNSTSYTWHPSRPGFFYFTFNNGSLQTCNKSSQ 105 (235)
Q Consensus 32 tF~VGDtLvF~y~~~-----~HsVv~V~~~~~Y~~C-n~s~p~~~s~g~st~~~v~L~~~G~~YFiCssg~~~HC~~~Gq 105 (235)
+++.||++.|+.-+. .|++.. ....++.= ...+.+.+..|....+.|+.+++|.|+|.|. ...|- .+||
T Consensus 218 ~v~~G~~vrlrliN~g~~~~~h~~hl--hG~~~~~dG~~~dtv~l~pger~~v~~~~~~pG~~~~hch--~~~H~-~~GM 292 (306)
T 1sdd_A 218 TVCAHDHISWHLIGMSSGPELFSIHF--NGQVLEQNHHKISAITLVSATSTTANMTVSPEGRWTIASL--IPRHF-QAGM 292 (306)
T ss_dssp CCCCC------BBCCCSSSCEECCBC--SSTTCEETTEECSCCCEETTCCBC--------CCCCCBCC--STTTG-GGTC
T ss_pred EEcCCCEEEEEEEeCCCCCccEEEEE--CCcEeeeCCEEcceEEECCCcEEEEEEEcCCCeEEEEEeC--ChHHH-hcCC
Confidence 678899998887542 122222 11122210 0011223444544456777889999999995 88999 9999
Q ss_pred eeEEEEecc
Q 042860 106 KLSIKVSAV 114 (235)
Q Consensus 106 Kl~I~V~~~ 114 (235)
...+.|...
T Consensus 293 ~~~~~V~~~ 301 (306)
T 1sdd_A 293 QAYIDIKNC 301 (306)
T ss_dssp BCCC-----
T ss_pred eEEEEEecC
Confidence 999998764
No 79
>2dv6_A Nitrite reductase; electron transfer, reduction, denitrification, oxidoreductase; 2.20A {Hyphomicrobium denitrificans}
Probab=46.15 E-value=46 Score=30.11 Aligned_cols=41 Identities=12% Similarity=0.137 Sum_probs=31.8
Q ss_pred ccCCCCcceEEEcCCceeEEEEEcCCCCCccccCCceeEEEEec
Q 042860 70 LTNPNSTSYTWHPSRPGFFYFTFNNGSLQTCNKSSQKLSIKVSA 113 (235)
Q Consensus 70 ~s~g~st~~~v~L~~~G~~YFiCssg~~~HC~~~GqKl~I~V~~ 113 (235)
+..|....+.|+.+++|.|+|-|. ...|= ..||...+.|..
T Consensus 393 l~pg~r~~i~~~~~~pG~~~~hch--~~~h~-~~Gm~~~~~v~~ 433 (447)
T 2dv6_A 393 VPPGGATIVDFKIDRAGRYILVDH--ALSRL-EHGLVGFLNVDG 433 (447)
T ss_dssp ECTTEEEEEEEECCSCEEEEEEES--SGGGG-GGTCCEEEEECS
T ss_pred ECCCcEEEEEEECCCCEEEEEEec--CcCcc-ccCCEEEEEEeC
Confidence 444544456777899999999995 77887 899998888865
No 80
>1fft_B Ubiquinol oxidase; electron transport, cytochrome oxidase, membrane protein, oxidoreductase; HET: HEM HEO; 3.50A {Escherichia coli} SCOP: b.6.1.2 f.17.2.1
Probab=45.88 E-value=8.4 Score=34.80 Aligned_cols=66 Identities=12% Similarity=0.164 Sum_probs=39.6
Q ss_pred ceeeCCEEEEEecCC--CCceEEecCcccccccCCCCccc-ccCCCCcceEEEcCCceeEEEEEcCCCCCccccC---Cc
Q 042860 32 SVHVGDTIIFKHKFN--NSNLYIFKNKNAFNLCNFSQATL-LTNPNSTSYTWHPSRPGFFYFTFNNGSLQTCNKS---SQ 105 (235)
Q Consensus 32 tF~VGDtLvF~y~~~--~HsVv~V~~~~~Y~~Cn~s~p~~-~s~g~st~~~v~L~~~G~~YFiCssg~~~HC~~~---Gq 105 (235)
.+-+|..+.|+-.+. .|+-.. . + +. .+. --.|-.+.+.++.+++|.||..| ...| .. .|
T Consensus 154 ~lP~g~~V~~~lTS~DViHsf~I-P-~--lg------~k~DaiPGr~n~~~~~~~~~G~y~g~C----sE~C-G~~Hs~M 218 (315)
T 1fft_B 154 AFPANTPVYFKVTSNSVMNSFFI-P-R--LG------SQIYAMAGMQTRLHLIANEPGTYDGIS----ASYS-GPGFSGM 218 (315)
T ss_dssp CCCSSSEEEEEECBSSSCEEEEE-G-G--GT------EEEEECBTSCEEEEEECCSCBCCEEBC----CSCC-STTTTTC
T ss_pred EEeCCCEEEEEEEeCCccceeee-c-c--cC------cEEeecCCcceeeEEecCCCeEEEEec----cccc-hhhHHhc
Confidence 467777788877653 133332 1 0 00 001 11222334578889999999999 4577 54 48
Q ss_pred eeEEEEe
Q 042860 106 KLSIKVS 112 (235)
Q Consensus 106 Kl~I~V~ 112 (235)
++.|.|.
T Consensus 219 ~~~v~vv 225 (315)
T 1fft_B 219 KFKAIAT 225 (315)
T ss_dssp CEECCBC
T ss_pred cceEEEe
Confidence 8888887
No 81
>1sdd_B Coagulation factor V; copper-binding protein, cofactor, blood clottin; HET: NAG NDG; 2.80A {Bos taurus} SCOP: b.6.1.3 b.6.1.3 b.18.1.2 b.18.1.2
Probab=45.19 E-value=28 Score=33.56 Aligned_cols=77 Identities=5% Similarity=-0.010 Sum_probs=48.0
Q ss_pred ceeeCCEEEEEecC-C----CCceEEecCcccccccCC----CCcccccCCCCcceEEEcCCceeEEEEEcCCCCCcccc
Q 042860 32 SVHVGDTIIFKHKF-N----NSNLYIFKNKNAFNLCNF----SQATLLTNPNSTSYTWHPSRPGFFYFTFNNGSLQTCNK 102 (235)
Q Consensus 32 tF~VGDtLvF~y~~-~----~HsVv~V~~~~~Y~~Cn~----s~p~~~s~g~st~~~v~L~~~G~~YFiCssg~~~HC~~ 102 (235)
+++.||++.|..-+ + .|.+.. ....+..-.. .+.+.+..|....+.|+.+.+|.++|-|. ...|- .
T Consensus 242 ~v~~G~~vrlrliN~~~~~~~h~~hl--hG~~f~vi~~d~~~~d~v~l~pg~r~~v~~~~~~pG~w~~hch--~~~h~-~ 316 (647)
T 1sdd_B 242 RMYEQEWVRLHLLNLGGSRDIHVVHF--HGQTLLENGTQQHQLGVWPLLPGSFKTLEMKASKPGWWLLDTE--VGEIQ-R 316 (647)
T ss_dssp EEETTCEEEEEEEECCCTTCCEEEEE--TTCCEEECSSSCEEESSEEECTTEEEEEEEECCSSEEEEEECC--CHHHH-T
T ss_pred EEcCCCEEEEEEEeCCCCCcceeEEE--cCcEEEEecCCCcccceEEECCCeEEEEEEEeccceEeecccC--ccccc-c
Confidence 56779999888743 1 244432 2222221111 01122444443446677789999999995 88999 9
Q ss_pred CCceeEEEEec
Q 042860 103 SSQKLSIKVSA 113 (235)
Q Consensus 103 ~GqKl~I~V~~ 113 (235)
+||...+.|..
T Consensus 317 ~Gm~~~~~V~~ 327 (647)
T 1sdd_B 317 AGMQTPFLIVD 327 (647)
T ss_dssp TTCEEEEEEEC
T ss_pred cccccceeeec
Confidence 99999999974
No 82
>2j5w_A Ceruloplasmin, ferroxidase; oxidoreductase, plasma protein, copper transport, copper, transport, polymorphism, glycoprotein, multi-copper oxidase; HET: NAG; 2.80A {Homo sapiens} SCOP: b.6.1.3 b.6.1.3 b.6.1.3 b.6.1.3 b.6.1.3 PDB: 1kcw_A*
Probab=39.94 E-value=36 Score=35.10 Aligned_cols=78 Identities=12% Similarity=0.176 Sum_probs=51.9
Q ss_pred ceeeCCEEEEEecC-----CCCceEEecCcccccccCCC----CcccccCCCCcceEEEcCCceeEEEEEcCCCCCcccc
Q 042860 32 SVHVGDTIIFKHKF-----NNSNLYIFKNKNAFNLCNFS----QATLLTNPNSTSYTWHPSRPGFFYFTFNNGSLQTCNK 102 (235)
Q Consensus 32 tF~VGDtLvF~y~~-----~~HsVv~V~~~~~Y~~Cn~s----~p~~~s~g~st~~~v~L~~~G~~YFiCssg~~~HC~~ 102 (235)
+++.||++++.+.+ ..|.+.. -...|+--... +.+.+..+....+.|+.+.+|.+.|-|- ...|= .
T Consensus 973 ~v~~G~~vr~~l~N~g~~~~~HpfHl--HG~~F~vv~~~p~~~DTv~v~pg~~~~v~~~ad~pG~w~~HCH--~~~H~-~ 1047 (1065)
T 2j5w_A 973 TMHVGDEVNWYLMGMGNEIDLHTVHF--HGHSFQYKHRGVYSSDVFDIFPGTYQTLEMFPRTPGIWLLHCH--VTDHI-H 1047 (1065)
T ss_dssp EEETTCEEEEEEEECCSTTCCEEEEE--SSCCEEETTTTCEEESEEEECTTCEEEEEECCCSCEEEEEEEC--CHHHH-H
T ss_pred EeCCCCEEEEEEEeCCCCCcceeEEE--cccEEEEEecCCceeeEEEECCCCeEEEEEECCCCeeEEEEeC--CHHHH-h
Confidence 78999999988754 2466654 12223222111 1122444444456677789999999995 78898 9
Q ss_pred CCceeEEEEecc
Q 042860 103 SSQKLSIKVSAV 114 (235)
Q Consensus 103 ~GqKl~I~V~~~ 114 (235)
+||...+.|...
T Consensus 1048 ~GM~~~~~V~~~ 1059 (1065)
T 2j5w_A 1048 AGMETTYTVLQN 1059 (1065)
T ss_dssp TTCEEEEEEECC
T ss_pred cCCcEEEEEecC
Confidence 999999999864
No 83
>3t9w_A Small laccase, multi-copper oxidase; two-domain copper oxidase, Cu-binding, oxidoreducta; 1.50A {Amycolatopsis SP}
Probab=37.32 E-value=1.6e+02 Score=25.44 Aligned_cols=79 Identities=11% Similarity=0.147 Sum_probs=0.0
Q ss_pred ceeeCCEEEEEecC---CCCceEEecCcccccccCCCCcc---cccCCCCcceEEEcC-------------CceeEEEEE
Q 042860 32 SVHVGDTIIFKHKF---NNSNLYIFKNKNAFNLCNFSQAT---LLTNPNSTSYTWHPS-------------RPGFFYFTF 92 (235)
Q Consensus 32 tF~VGDtLvF~y~~---~~HsVv~V~~~~~Y~~Cn~s~p~---~~s~g~st~~~v~L~-------------~~G~~YFiC 92 (235)
++++||+|+.++.+ ..+||.- -.-.+..-.-..+. ....|.+-+|+|++. ..|+|||-|
T Consensus 61 ~~~~GD~v~v~~~N~l~~~~siH~--HG~~~~~~~DG~~~~~~~i~PG~t~~Y~~~~~~~~~~~~~~~~~~~~gt~~YH~ 138 (299)
T 3t9w_A 61 EMWEGDTLEIDLVNTTDRVLSLHP--HGVDYDVNSDGTLMNGSAVMPGQTRRYTWRSHVGYRRADGSWAEGTAGYWHYHD 138 (299)
T ss_dssp EEETTCEEEEEEEECSSSCBCCEE--SSSBCCGGGSCCTTTTCCBCTTCEEEEEEBCCCCEECTTSCEECCCCEEEEEEC
T ss_pred EEECCeEEEEEEEECCCCCccEEe--CCcccCCccCCCccccCccCCCCeEEEEEEeecccccCCCcCCCCCceeEEEec
Q ss_pred cCCCCCccccC----------CceeEEEEeccCCCCC
Q 042860 93 NNGSLQTCNKS----------SQKLSIKVSAVSSTPS 119 (235)
Q Consensus 93 ssg~~~HC~~~----------GqKl~I~V~~~~~~ps 119 (235)
|. .. ||.-.|.|........
T Consensus 139 ------H~-~~~~~~~~~~~~GL~G~liV~~~~~~~~ 168 (299)
T 3t9w_A 139 ------HA-MGTEHGTEGVLKGLYGALVVRRQGDLLP 168 (299)
T ss_dssp ------SS-SSSTTCHHHHHHTCEEEEEEECTTCCCC
T ss_pred ------CC-cccccchhhhcccccceEEEecccccCc
No 84
>1sdd_A Coagulation factor V; copper-binding protein, cofactor, blood clottin; HET: NAG NDG; 2.80A {Bos taurus} SCOP: b.6.1.3 b.6.1.3
Probab=37.26 E-value=81 Score=27.27 Aligned_cols=80 Identities=10% Similarity=0.061 Sum_probs=44.4
Q ss_pred ceeeCCEEEEEecCC---CCceEEecCcccc----cc-cCCCCc-------ccccCCCCcceEEEcCCc----------e
Q 042860 32 SVHVGDTIIFKHKFN---NSNLYIFKNKNAF----NL-CNFSQA-------TLLTNPNSTSYTWHPSRP----------G 86 (235)
Q Consensus 32 tF~VGDtLvF~y~~~---~HsVv~V~~~~~Y----~~-Cn~s~p-------~~~s~g~st~~~v~L~~~----------G 86 (235)
+++.||+|++++.+. .+++.- -.-.+ |. ....+. .....|.+-.|+|++++. |
T Consensus 63 ~v~~Gd~v~v~~~N~l~~~~siH~--HGl~~~~~~dG~~~~dg~~~~~~~~~~I~PG~~~~Y~f~~~~~~gp~~~d~~~G 140 (306)
T 1sdd_A 63 YAEVGDIMKVHFKNKAHKPLSIHA--QGIKYSKFSEGASYSDHTLPMEKMDDAVAPGQEYTYEWIISEHSGPTHDDPPCL 140 (306)
T ss_dssp EEETTCEEEEEEEECSSSCBCCEE--ESSCCCTTTSCCCSCCCCCHHHHTTTCBCTTCEEEEEEECCGGGSCCSSSCSEE
T ss_pred EEeCCCEEEEEEEECCCCcccEee--cceecccccCCCccCCCCcccccCCCccCCCCeEEEEEEeCCccCCCCCCCCce
Confidence 689999999988652 233321 01111 10 100110 012334444677887654 8
Q ss_pred eEEEEEcCCCCCccccCCceeEEEEecc
Q 042860 87 FFYFTFNNGSLQTCNKSSQKLSIKVSAV 114 (235)
Q Consensus 87 ~~YFiCssg~~~HC~~~GqKl~I~V~~~ 114 (235)
+|||-|......+- ..|+.-.|.|...
T Consensus 141 T~wYHsH~~~~~q~-~~GL~G~liV~~~ 167 (306)
T 1sdd_A 141 THIYYSYVNLVEDF-NSGLIGPLLICKK 167 (306)
T ss_dssp EEEEECCSSSHHHH-HTTCCEEEEEECT
T ss_pred EEEEeccCCchhhh-ccCceEEEEEccC
Confidence 99999852112255 6899888888763
No 85
>3zx1_A Oxidoreductase, putative; laccase, metallo-oxidase, cuprous oxidase; 1.95A {Campylobacter jejuni subsp}
Probab=36.57 E-value=27 Score=32.91 Aligned_cols=76 Identities=11% Similarity=0.074 Sum_probs=48.8
Q ss_pred ceeeCCEEEEEecC---CCCceEEecCcccccccC--------------CCCcccccCCCCcceEEEcCCceeEEEEEcC
Q 042860 32 SVHVGDTIIFKHKF---NNSNLYIFKNKNAFNLCN--------------FSQATLLTNPNSTSYTWHPSRPGFFYFTFNN 94 (235)
Q Consensus 32 tF~VGDtLvF~y~~---~~HsVv~V~~~~~Y~~Cn--------------~s~p~~~s~g~st~~~v~L~~~G~~YFiCss 94 (235)
+++.||++++.+.+ ..|.+.. -...|+--+ ..+.+.+..+...++.++.+.+|.+-|=|-
T Consensus 388 ~~~~G~~v~w~l~N~~~~~Hp~Hl--HG~~F~vl~~~~~g~~~~~~~~~~kDTv~v~Pg~~~~i~~~~d~pG~w~~HCH- 464 (481)
T 3zx1_A 388 SSKLGVVEDWIVINKSHMDHPFHI--HGTQFELISSKLNGKVQKAEFRALRDTINVRPNEELRLRMKQDFKGLRMYHCH- 464 (481)
T ss_dssp EEETTCCEEEEEEECSSSCEEEEE--TTCCEEEEEEEETTEEEECSSCCEESEEEECTTCEEEEEECCCSCEEEEEEES-
T ss_pred EeCCCCEEEEEEEcCCCCceeEEE--eccEEEEEEecccCCCCCcccCcccceEEECCCCEEEEEEEcCCCeeEEEEcC-
Confidence 57999999988863 2344433 111111110 011122444444556777799999999995
Q ss_pred CCCCccccCCceeEEEEe
Q 042860 95 GSLQTCNKSSQKLSIKVS 112 (235)
Q Consensus 95 g~~~HC~~~GqKl~I~V~ 112 (235)
...|= ..||...+.|.
T Consensus 465 -il~H~-d~GMm~~~~V~ 480 (481)
T 3zx1_A 465 -ILEHE-DLGMMGNLEVK 480 (481)
T ss_dssp -SHHHH-HTTCEEEEEEE
T ss_pred -ChHHH-hcCCceEEEEe
Confidence 89999 99999999886
No 86
>1wid_A DNA-binding protein RAV1; DNA-binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: b.142.1.2
Probab=36.31 E-value=14 Score=28.65 Aligned_cols=15 Identities=20% Similarity=0.448 Sum_probs=9.9
Q ss_pred CceeeCCEEEEEecC
Q 042860 31 PSVHVGDTIIFKHKF 45 (235)
Q Consensus 31 ptF~VGDtLvF~y~~ 45 (235)
+..++||.|+|....
T Consensus 90 ~~L~~GD~~~F~~~~ 104 (130)
T 1wid_A 90 KNLRAGDVVSFSRSN 104 (130)
T ss_dssp TTCCTTCEEEEEECC
T ss_pred cCCCCCCEEEEEEec
Confidence 356777777776654
No 87
>1mzy_A Copper-containing nitrite reductase; mutant M182T, gating mechanism, electron oxidoreductase; 1.46A {Rhodobacter sphaeroides} SCOP: b.6.1.3 b.6.1.3 PDB: 1mzz_A 1n70_A 1zv2_A 2a3t_A 2dws_A 2dwt_A 2dy2_A
Probab=36.12 E-value=28 Score=30.49 Aligned_cols=42 Identities=10% Similarity=0.209 Sum_probs=31.3
Q ss_pred ccCCCCcceEEEcCCceeEEEEEcCCCCCccccCCceeEEEEec
Q 042860 70 LTNPNSTSYTWHPSRPGFFYFTFNNGSLQTCNKSSQKLSIKVSA 113 (235)
Q Consensus 70 ~s~g~st~~~v~L~~~G~~YFiCssg~~~HC~~~GqKl~I~V~~ 113 (235)
+..|....+.|+.+++|.|+|.|. ...|+...||.-.|+|..
T Consensus 277 l~pGer~~v~v~a~~pG~y~~~ch--~~~h~~~~Gm~~~~~v~~ 318 (333)
T 1mzy_A 277 IRGGTAGAALYKFLQPGVYAYVNH--NLIEAVHKGATAHVLVEG 318 (333)
T ss_dssp BCTTEEEEEEEECCSCEEEEEEES--SHHHHHTTCCEEEEEEES
T ss_pred ECCCceEEEEEEcCCCEEEEEecC--hhhhHhhCCCEEEEEEcC
Confidence 444443446677889999999994 667753689999999976
No 88
>3aw5_A Multicopper oxidase; beta barrel, oxidoreductase; 2.00A {Pyrobaculum aerophilum}
Probab=35.58 E-value=24 Score=32.57 Aligned_cols=77 Identities=16% Similarity=0.153 Sum_probs=45.9
Q ss_pred ceeeCCEEEEEecCC---CCceEE----ecCcc-cccccCCCCcccccCCCCcceEEEcC-CceeEEEEEcC-C-CCCcc
Q 042860 32 SVHVGDTIIFKHKFN---NSNLYI----FKNKN-AFNLCNFSQATLLTNPNSTSYTWHPS-RPGFFYFTFNN-G-SLQTC 100 (235)
Q Consensus 32 tF~VGDtLvF~y~~~---~HsVv~----V~~~~-~Y~~Cn~s~p~~~s~g~st~~~v~L~-~~G~~YFiCss-g-~~~HC 100 (235)
+++.||+|+.++.++ .++|.- +.+.. +.-.|- ...|.+-.|+|+++ ++|+|||=|.. + ...+=
T Consensus 41 ~~~~Gd~v~v~~~N~l~~~tsiHwHG~~~~~~~DG~~~~~------i~PG~~~~Y~f~~~~~~GT~wYH~H~~~~~~~q~ 114 (448)
T 3aw5_A 41 ILRRGQRVDMTLKNKLTEPTIVHWHGFDVNWHNDAHPSFA------ITPGESYNYSFDVVNRAGTYLYHPHPHGLTAKQF 114 (448)
T ss_dssp EEETTCEEEEEEEECSSSCBCEEEETCCCCHHHHTCGGGC------BCTTCEEEEEEECCSCSEEEEEEECCTTTHHHHH
T ss_pred EEeCCCEEEEEEEECCCCceeEEeCCccCCCccCCCCCcc------CCCCCEEEEEEEcCCCCCceEeccCCCCchHHHH
Confidence 578999999988753 233321 00100 001132 33445556888888 79999999830 0 22333
Q ss_pred ccCCceeEEEEeccC
Q 042860 101 NKSSQKLSIKVSAVS 115 (235)
Q Consensus 101 ~~~GqKl~I~V~~~~ 115 (235)
..|+--.|.|....
T Consensus 115 -~~Gl~G~liV~~~~ 128 (448)
T 3aw5_A 115 -YMGQLGLVIVEDSG 128 (448)
T ss_dssp -HTTCCEEEEEECTT
T ss_pred -hccceEEEEEeCCc
Confidence 58999999998743
No 89
>1v10_A Laccase; multicopper blue oxidase, oxidase; 1.7A {Rigidoporus lignosus} SCOP: b.6.1.3 b.6.1.3 b.6.1.3
Probab=35.06 E-value=77 Score=29.71 Aligned_cols=78 Identities=9% Similarity=0.126 Sum_probs=0.0
Q ss_pred ceeeCCEEEEEecCCC-------------CceEEecCcccccccCCCCcccccCCCCcceEEE-cCCceeEEEEEcCCCC
Q 042860 32 SVHVGDTIIFKHKFNN-------------SNLYIFKNKNAFNLCNFSQATLLTNPNSTSYTWH-PSRPGFFYFTFNNGSL 97 (235)
Q Consensus 32 tF~VGDtLvF~y~~~~-------------HsVv~V~~~~~Y~~Cn~s~p~~~s~g~st~~~v~-L~~~G~~YFiCssg~~ 97 (235)
+++.||+|+.++.++. |-+.+- .....|.=..-.-.-...|.+-+|+|+ .+++|+|||=|. ..
T Consensus 58 ~~~~Gd~v~v~v~N~l~~~~~~~~tsiHwHGl~~~-~~~~~DGv~~vtq~~I~PG~s~~Y~f~~~~~~GT~wYH~H--~~ 134 (521)
T 1v10_A 58 TGNIDDRFQINVIDQLTDANMRRATSIHWHGFFQA-GTTEMDGPAFVNQCPIIPNESFVYDFVVPGQAGTYWYHSH--LS 134 (521)
T ss_dssp EEETTCEEEEEEEECCCCTTSCCCBCEEEETCCCT-TCGGGSCCBTTTBCCBCTTEEEEEEEECTTCCEEEEEEEC--ST
T ss_pred EEeCCCEEEEEEEECCCCccCCCCceEecCCeecc-CCCccCCCcceeeCCcCCCCeEEEEEecCCCCccEEEEec--cC
Q ss_pred CccccCCceeEEEEec
Q 042860 98 QTCNKSSQKLSIKVSA 113 (235)
Q Consensus 98 ~HC~~~GqKl~I~V~~ 113 (235)
.|= ..|+--.+.|..
T Consensus 135 ~q~-~~Gl~G~liV~~ 149 (521)
T 1v10_A 135 TQY-CDGLRGAFVVYD 149 (521)
T ss_dssp TGG-GGTCEEEEEEEC
T ss_pred Cch-hcCceEEEEEcC
No 90
>3l6w_A Hemocyanin 1; cupredoxin domain, copper-binding protein, metal-binding, oxygen binding; 4.00A {Megathura crenulata} PDB: 3qjo_A
Probab=34.80 E-value=36 Score=32.67 Aligned_cols=73 Identities=14% Similarity=0.298 Sum_probs=43.0
Q ss_pred ceeeCCEEEEEecCC--CCceEEecCcccccccCCCCccc--ccCCCCcceEEEcCCceeEEEEEcCCCCCccccCCc-e
Q 042860 32 SVHVGDTIIFKHKFN--NSNLYIFKNKNAFNLCNFSQATL--LTNPNSTSYTWHPSRPGFFYFTFNNGSLQTCNKSSQ-K 106 (235)
Q Consensus 32 tF~VGDtLvF~y~~~--~HsVv~V~~~~~Y~~Cn~s~p~~--~s~g~st~~~v~L~~~G~~YFiCssg~~~HC~~~Gq-K 106 (235)
-++-|-.|.|.=-.. ..-++.+.+-.+...|+..--.+ +.=+ ++.--++|.|||.. +...-| ++|- |
T Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~--~~~~~~-~~~~~~ 485 (491)
T 3l6w_A 414 VVKRGTKIMFMSVDEAVTTPMLNLGSYTAMFKCKVPPFSFHAFELG-----KMYSVESGDYFMTA--STTELC-NDNNLR 485 (491)
T ss_pred EeecCCEEEEEecccchhhHHHhhhhhhhhhccccCCCccCccccc-----ceEecCCCceEecC--ChHHHH-hCCcee
Confidence 367788888843221 11222222334556788754221 2222 12223689999985 688999 8887 9
Q ss_pred eEEEEe
Q 042860 107 LSIKVS 112 (235)
Q Consensus 107 l~I~V~ 112 (235)
+.|.|.
T Consensus 486 ~~~~~~ 491 (491)
T 3l6w_A 486 IHVHVD 491 (491)
T ss_pred EEEEeC
Confidence 999883
No 91
>3tas_A Small laccase, multi-copper oxidase; two-domain laccase, oxidoreductase, secreted; HET: PG4; 2.30A {Streptomyces viridosporus} PDB: 3tbb_A 3tbc_A*
Probab=34.74 E-value=1.6e+02 Score=25.54 Aligned_cols=76 Identities=12% Similarity=0.249 Sum_probs=40.9
Q ss_pred ceeeCCEEEEEecCC---CCceEE----ecCccc---ccccCCCCcccccCCCCcceEEEcC-------------CceeE
Q 042860 32 SVHVGDTIIFKHKFN---NSNLYI----FKNKNA---FNLCNFSQATLLTNPNSTSYTWHPS-------------RPGFF 88 (235)
Q Consensus 32 tF~VGDtLvF~y~~~---~HsVv~----V~~~~~---Y~~Cn~s~p~~~s~g~st~~~v~L~-------------~~G~~ 88 (235)
++++||+|+.++.+. .+||.- +....+ ...|. ...|.+-+|+|+++ ..|+|
T Consensus 45 ~~~~Gd~v~v~~~N~l~~~~siH~HG~~~~~~~dG~~~~~~~------i~PG~~~~Y~~~~~~P~~~~~~~~~~~~~gt~ 118 (313)
T 3tas_A 45 ELNEGDTLHIEFENTMDVPVSLHVHGLDYEISSDGTKQSRSD------VEPGGTRTYTWRTHVPGRRADGTWRAGSAGYW 118 (313)
T ss_dssp EEETTCEEEEEEEECSSSCBCCEESSSBCCGGGSCSTTTTCC------BCTTCEEEEEEBCCCCEECTTSCEECCSCEEE
T ss_pred EEECCCEEEEEEEECCCCCccEeecCCcCCccCCCCccccCC------cCCCCEEEEEEEeccCCccccccccCCCceEE
Confidence 689999999988753 233321 111100 11121 22333334666654 45889
Q ss_pred EEEEcCCCCC----ccccCCceeEEEEecc
Q 042860 89 YFTFNNGSLQ----TCNKSSQKLSIKVSAV 114 (235)
Q Consensus 89 YFiCssg~~~----HC~~~GqKl~I~V~~~ 114 (235)
||-|...... |= ..||--.|.|...
T Consensus 119 ~YH~h~~~~~~~~~~~-~~Gl~G~liV~~~ 147 (313)
T 3tas_A 119 HYHDHVVGTEHGTGGI-RNGLYGPVIVRRK 147 (313)
T ss_dssp EEECSSSSSTTCHHHH-HHTCEEEEEEECT
T ss_pred EEeecCcccccchhhh-hccccCceEeecc
Confidence 9998411111 12 3799888988763
No 92
>1hfu_A Laccase 1; oxidoreductase, blue multi-copper oxidase, type-2 copper depleted, signal, glycoprotein; HET: MAN NAG NDG; 1.68A {Coprinus cinereus} SCOP: b.6.1.3 b.6.1.3 b.6.1.3 PDB: 1a65_A*
Probab=33.07 E-value=76 Score=29.54 Aligned_cols=78 Identities=8% Similarity=0.035 Sum_probs=0.0
Q ss_pred ceeeCCEEEEEecCCC-------------CceEEecCcccccccCCCCcccccCCCCcceEEE-cCCceeEEEEEcCCCC
Q 042860 32 SVHVGDTIIFKHKFNN-------------SNLYIFKNKNAFNLCNFSQATLLTNPNSTSYTWH-PSRPGFFYFTFNNGSL 97 (235)
Q Consensus 32 tF~VGDtLvF~y~~~~-------------HsVv~V~~~~~Y~~Cn~s~p~~~s~g~st~~~v~-L~~~G~~YFiCssg~~ 97 (235)
+++.||+|+.++.++. |-+.+- .....|.=..-.-.-...|.+-.|+|+ .+++|+|||=|- ..
T Consensus 37 ~~~~Gd~v~v~v~N~l~~~~~~~~tsiHwHG~~~~-~~~~~DGv~~vtq~~I~PG~~~~Y~f~~~~~~GT~wYH~H--~~ 113 (503)
T 1hfu_A 37 RGGKNDNFELNVVNDLDNPTMLRPTSIHWHGLFQR-GTNWADGADGVNQCPISPGHAFLYKFTPAGHAGTFWYHSH--FG 113 (503)
T ss_dssp EEETTCCEEEEEEECCCCTTSCCSBCEEEETCCCT-TCGGGSCCBTTTBCCBCTTCEEEEEECCTTCCEEEEEEEC--ST
T ss_pred EEeCCCEEEEEEEeCCCCccCCCcccEeccceecc-CCCccCCCcccccCCcCCCCeEEEEEEeCCCCccEEEEec--ch
Q ss_pred CccccCCceeEEEEec
Q 042860 98 QTCNKSSQKLSIKVSA 113 (235)
Q Consensus 98 ~HC~~~GqKl~I~V~~ 113 (235)
.+= ..|+.-.+.|..
T Consensus 114 ~q~-~~Gl~G~liV~~ 128 (503)
T 1hfu_A 114 TQY-CDGLRGPMVIYD 128 (503)
T ss_dssp TGG-GGTCEEEEEEEC
T ss_pred hhh-hCcceeeEEEcC
No 93
>3kw8_A Laccase, putative copper oxidase; two-domain laccase, oxidoreductase, multicopper blue protein; HET: PG4 PGE; 2.29A {Streptomyces coelicolor} PDB: 4gxf_A* 4gy4_A*
Probab=32.27 E-value=1.8e+02 Score=24.60 Aligned_cols=80 Identities=14% Similarity=0.243 Sum_probs=44.5
Q ss_pred ceeeCCEEEEEecCC---CCceEEecCcccccccCCCCcc---cccCCCCcceEEEcCC-------------ceeEEEEE
Q 042860 32 SVHVGDTIIFKHKFN---NSNLYIFKNKNAFNLCNFSQAT---LLTNPNSTSYTWHPSR-------------PGFFYFTF 92 (235)
Q Consensus 32 tF~VGDtLvF~y~~~---~HsVv~V~~~~~Y~~Cn~s~p~---~~s~g~st~~~v~L~~-------------~G~~YFiC 92 (235)
+++.||+|+.++.+. .++|.. -.-.+....-..+. ....|.+-.|+|++++ .|.+||-|
T Consensus 39 ~~~~Gd~v~v~~~N~~~~~~siH~--HG~~~~~~~DG~~~t~~~i~pG~~~~Y~f~~~~~~~~~~g~~~~~~~gt~~YH~ 116 (276)
T 3kw8_A 39 EVNEGDTLHIEFTNTMDVRASLHV--HGLDYEISSDGTAMNKSDVEPGGTRTYTWRTHKPGRRDDGTWRPGSAGYWHYHD 116 (276)
T ss_dssp EEETTCEEEEEEEECSSSCBCCEE--SSSBCCGGGSCCTTTTCSBCTTCEEEEEEECCCCEECTTSCEECCSCEEEEEEC
T ss_pred EEECCCEEEEEEEECCCCCccEee--cCcccCCccCCCcCCcCCCCCCCEEEEEEEcCCccccccCccCCCCCEEEEEec
Confidence 689999999988653 233322 11111111000011 1334444467888864 58888888
Q ss_pred cCCC----CCccccCCceeEEEEecc
Q 042860 93 NNGS----LQTCNKSSQKLSIKVSAV 114 (235)
Q Consensus 93 ssg~----~~HC~~~GqKl~I~V~~~ 114 (235)
.... ..|= .+||--.|.|...
T Consensus 117 h~~~~~~~~~~~-~~Gl~G~liV~~~ 141 (276)
T 3kw8_A 117 HVVGTEHGTGGI-RNGLYGPVIVRRK 141 (276)
T ss_dssp SSSSSTTCHHHH-HHTCEEEEEEECT
T ss_pred Cccccccchhhh-hCccEEEEEEecC
Confidence 4111 1244 6899999999874
No 94
>2r7e_B Coagulation factor VIII; ceruloplasmin fold, cupper protein fold, C2 domain fold, ACU blood coagulation, disease mutation, glycoprotein; HET: NAG BMA MAN; 3.70A {Homo sapiens} PDB: 3cdz_B*
Probab=30.90 E-value=51 Score=32.93 Aligned_cols=80 Identities=10% Similarity=0.143 Sum_probs=45.8
Q ss_pred ceeeCCEEEEEecCCC---CceEEecCcccccccCCCC---cc-cccCCCCcceEEEcC----------CceeEEEEEcC
Q 042860 32 SVHVGDTIIFKHKFNN---SNLYIFKNKNAFNLCNFSQ---AT-LLTNPNSTSYTWHPS----------RPGFFYFTFNN 94 (235)
Q Consensus 32 tF~VGDtLvF~y~~~~---HsVv~V~~~~~Y~~Cn~s~---p~-~~s~g~st~~~v~L~----------~~G~~YFiCss 94 (235)
++++||+|+.++.+.. ++|.- -.-.|....... .. ....|.+-.|+|++. ..|+|||-|..
T Consensus 202 r~~~GD~v~v~~~N~l~~~~siH~--HG~~~~~~~~dG~~~~~~~I~PG~~~tY~f~~~~~~gp~~~d~~~Gt~wYHsh~ 279 (770)
T 2r7e_B 202 RAEVEDNIMVTFRNQASRPYSFYS--SLISYEEDQRQGAEPRKNFVKPNETKTYFWKVQHHMAPTKDEFDCKAWAYSSDV 279 (770)
T ss_dssp CCCSSSCEEEEEECCSSSCCCCCB--TTCCCCCCSSSCTTTTSSCCCSSCEEEEECCCCSSSSCCSSCCSEEEEEECCCS
T ss_pred EEEcCCEEEEEEEECCCCCcceee--cccccccccCCCCcCccCccCCCCeEEEEEEecCccCCccCCCCCeeEEeeccC
Confidence 6899999999886532 22211 011111111101 11 123344435667766 78999999853
Q ss_pred CCCCccccCCceeEEEEecc
Q 042860 95 GSLQTCNKSSQKLSIKVSAV 114 (235)
Q Consensus 95 g~~~HC~~~GqKl~I~V~~~ 114 (235)
....|. ..|+.-.|.|...
T Consensus 280 ~~~~q~-~~GL~G~liV~~~ 298 (770)
T 2r7e_B 280 DLEKDV-HSGLIGPLLVCHT 298 (770)
T ss_dssp SSSHHH-HTSCCEEEEEECS
T ss_pred CcHHHH-hCCceeeEEECCC
Confidence 223367 8999999999864
No 95
>2r7e_A Coagulation factor VIII; ceruloplasmin fold, cupper protein fold, C2 domain fold, ACU blood coagulation, disease mutation, glycoprotein; HET: NAG BMA MAN; 3.70A {Homo sapiens} PDB: 3cdz_A*
Probab=29.72 E-value=17 Score=36.23 Aligned_cols=78 Identities=12% Similarity=0.125 Sum_probs=52.4
Q ss_pred ceeeCCEEEEEecC-----CCCceEEecCcccccccC-CCCcccccCCCCcceEEEcCCceeEEEEEcCCCCCccccCCc
Q 042860 32 SVHVGDTIIFKHKF-----NNSNLYIFKNKNAFNLCN-FSQATLLTNPNSTSYTWHPSRPGFFYFTFNNGSLQTCNKSSQ 105 (235)
Q Consensus 32 tF~VGDtLvF~y~~-----~~HsVv~V~~~~~Y~~Cn-~s~p~~~s~g~st~~~v~L~~~G~~YFiCssg~~~HC~~~Gq 105 (235)
+++.||++.|..-+ ..|++.. ....|+--. ..+.+.+..|....+.++.+.+|.|+|-|- ...|= .+||
T Consensus 629 ~v~~Ge~vr~rliN~g~~~~~h~~Hl--hGh~f~v~~~~~Dtv~l~Pg~~~~v~~~ad~pG~w~~hcH--~~~H~-~~GM 703 (742)
T 2r7e_A 629 SVCLHEVAYWYILSIGAQTDFLSVFF--SGYTFKHKMVYEDTLTLFPFSGETVFMSMENPGLWILGCH--NSDFR-NRGM 703 (742)
T ss_dssp CCCSSCCCEEEEEECSSCCCCCCCEE--SSSCCCCBSSSBCSSCCCCCSSEECCEECCCCCCSCCEEC--CCSTT-HHHH
T ss_pred EEeCCCEEEEEEEeCCCCcceEEEEE--cCcEEEEeccceeEEEECCCcEEEEEEEcCCCeEEEEEeC--CchHH-hCCC
Confidence 68999999988743 2477765 233333211 112223444544456677789999999995 88998 9999
Q ss_pred eeEEEEecc
Q 042860 106 KLSIKVSAV 114 (235)
Q Consensus 106 Kl~I~V~~~ 114 (235)
...++|...
T Consensus 704 ~~~~~V~~~ 712 (742)
T 2r7e_A 704 TALLKVSSC 712 (742)
T ss_dssp SCCCCCCCC
T ss_pred eEEEEEEeC
Confidence 999888764
No 96
>2r7e_A Coagulation factor VIII; ceruloplasmin fold, cupper protein fold, C2 domain fold, ACU blood coagulation, disease mutation, glycoprotein; HET: NAG BMA MAN; 3.70A {Homo sapiens} PDB: 3cdz_A*
Probab=27.47 E-value=54 Score=32.53 Aligned_cols=78 Identities=8% Similarity=-0.001 Sum_probs=48.3
Q ss_pred ceeeCCEEEEEecCC-----CCceEEecCcccccccC-CCCcccccCCCCcceEEEcCCceeEEEEEcCCCCCccccCCc
Q 042860 32 SVHVGDTIIFKHKFN-----NSNLYIFKNKNAFNLCN-FSQATLLTNPNSTSYTWHPSRPGFFYFTFNNGSLQTCNKSSQ 105 (235)
Q Consensus 32 tF~VGDtLvF~y~~~-----~HsVv~V~~~~~Y~~Cn-~s~p~~~s~g~st~~~v~L~~~G~~YFiCssg~~~HC~~~Gq 105 (235)
+++.||++.|+.-+. .|++.. ....|+-=. ..+.+.+..+....+.++.+.+|.|+|-|- ...|= ..||
T Consensus 247 ~v~~Ge~vrlrliN~g~~~~~h~~hl--hGh~f~Vvg~~~Dtv~v~Pg~~~~v~~~~~~pG~w~~hCH--~~~H~-~~GM 321 (742)
T 2r7e_A 247 IGCHRKSVYWHVIGMGTTPEVHSIFL--EGHTFLVRNHRQASLEISPITFLTAQTLLMDLGQFLLFCH--ISSHQ-HDGM 321 (742)
T ss_dssp EECSSSCEEEECCCCCSSSCCCCCCC--TTCCCEETTEECCSCCCCTTCCCEEEECCCSCSEECCCCC--SSSSS-TTSC
T ss_pred EEcCCCEEEEEEEeCCCCCcceEEEE--CCCEEEEEeEecceEEeCCCcEEEEEEEeCCCeeEEEEeC--ChhHH-hCCC
Confidence 688999999887431 244432 111111000 011222333444446677789999999995 88998 9999
Q ss_pred eeEEEEecc
Q 042860 106 KLSIKVSAV 114 (235)
Q Consensus 106 Kl~I~V~~~ 114 (235)
.-.+.|...
T Consensus 322 ~~~~~V~~~ 330 (742)
T 2r7e_A 322 EAYVKVDSC 330 (742)
T ss_dssp CBCEEECCC
T ss_pred eEEEEEecC
Confidence 988888764
No 97
>2r7e_B Coagulation factor VIII; ceruloplasmin fold, cupper protein fold, C2 domain fold, ACU blood coagulation, disease mutation, glycoprotein; HET: NAG BMA MAN; 3.70A {Homo sapiens} PDB: 3cdz_B*
Probab=27.32 E-value=17 Score=36.37 Aligned_cols=76 Identities=9% Similarity=-0.029 Sum_probs=48.5
Q ss_pred ceeeCCEEEEEecCC-----CCceEEecCcccccccCC----CCcccccCCCCcceEEEcCCceeEEEEEcCCCCCcccc
Q 042860 32 SVHVGDTIIFKHKFN-----NSNLYIFKNKNAFNLCNF----SQATLLTNPNSTSYTWHPSRPGFFYFTFNNGSLQTCNK 102 (235)
Q Consensus 32 tF~VGDtLvF~y~~~-----~HsVv~V~~~~~Y~~Cn~----s~p~~~s~g~st~~~v~L~~~G~~YFiCssg~~~HC~~ 102 (235)
+++.||++.|.+-+. .|.+.. ....|.--.. .+.+.+..|....+.|+.+.+|.+.|-|. ...|- .
T Consensus 371 ~v~~Ge~vr~rliN~g~~~~~H~fHl--hGh~f~Vv~~dg~~~Dtv~l~Pg~~~~v~~~ad~pG~w~~hcH--~~~H~-~ 445 (770)
T 2r7e_B 371 VMAQDQRIRWYLLSMGSNENIHSIHF--SGHVFTVRKKEEYKMALYNLYPGVFETVEMLPSKAGIWRVECL--IGEHL-H 445 (770)
T ss_dssp CCCSSSCEEEECCCCCSSSCCCEEEB--SSCCEECCSSSCCEESEEECCTTCCCEEEECCSSCBCCCBCCC--SHHHH-T
T ss_pred EEeCCCEEEEEEEeCCCCcceEEEEE--cCCEEEEEecCCceeeEEEECCCeEEEEEEEeCCCCceEEEec--ccccc-c
Confidence 688999999987642 354432 1222221111 11223444444446677789999999995 78999 9
Q ss_pred CCceeEEEEe
Q 042860 103 SSQKLSIKVS 112 (235)
Q Consensus 103 ~GqKl~I~V~ 112 (235)
.||+..+.|.
T Consensus 446 ~GM~~~~~V~ 455 (770)
T 2r7e_B 446 AGMSTLFLVY 455 (770)
T ss_dssp TBCCCCCCBC
T ss_pred cccccccccc
Confidence 9999888884
No 98
>3zx1_A Oxidoreductase, putative; laccase, metallo-oxidase, cuprous oxidase; 1.95A {Campylobacter jejuni subsp}
Probab=27.10 E-value=80 Score=29.61 Aligned_cols=77 Identities=9% Similarity=0.076 Sum_probs=45.0
Q ss_pred ceeeCCEEEEEecCC---CCceEE----ecCcc-cccccCCCCcccccCCCCcceEEEcCC--ceeEEEEEcC-C-CCCc
Q 042860 32 SVHVGDTIIFKHKFN---NSNLYI----FKNKN-AFNLCNFSQATLLTNPNSTSYTWHPSR--PGFFYFTFNN-G-SLQT 99 (235)
Q Consensus 32 tF~VGDtLvF~y~~~---~HsVv~----V~~~~-~Y~~Cn~s~p~~~s~g~st~~~v~L~~--~G~~YFiCss-g-~~~H 99 (235)
+++.||.|+.++.++ .++|.- +.++. +.-.|- ...|.+-.|.|++.+ +|+|||=|.. + ...|
T Consensus 85 r~~~Gd~v~v~v~N~l~~~tsiHwHGl~~~~~~DG~pq~~------I~PG~s~~Y~f~~~~~~~GT~WYH~H~~~~t~~q 158 (481)
T 3zx1_A 85 EVFEGDKLEILVKNKLKEATTIHWHGVPVPPDQDGSPHDP------ILAGEERIYRFEIPQDSAGTYWYHPHPHYTASKQ 158 (481)
T ss_dssp EEETTCEEEEEEEECSSSCBCCEEETCCCCGGGSCCTTSC------BCTTCEEEEEEECCTTCCEEEEEECCCTTTHHHH
T ss_pred EEECCcEEEEEEEeCCCCCeeEEecCcccCCccCCCccCc------CCCCCeEEEEEeCCCCCCceEEEeecCCCcchhh
Confidence 789999999988653 122221 01110 011121 334445567888876 7999999831 0 0223
Q ss_pred cccCCceeEEEEeccC
Q 042860 100 CNKSSQKLSIKVSAVS 115 (235)
Q Consensus 100 C~~~GqKl~I~V~~~~ 115 (235)
= ..|+.-.+.|....
T Consensus 159 ~-~~GL~G~lIV~~~~ 173 (481)
T 3zx1_A 159 V-FMGLAGAFVIKAKK 173 (481)
T ss_dssp H-HTTCCEEEEEECSS
T ss_pred h-hccceEEEEEcCcc
Confidence 3 57999999998743
No 99
>3iuw_A Activating signal cointegrator; NP_814290.1, structural GENO joint center for structural genomics, JCSG, protein structu initiative; HET: MSE; 1.58A {Enterococcus faecalis V583}
Probab=26.83 E-value=24 Score=26.01 Aligned_cols=15 Identities=27% Similarity=0.445 Sum_probs=11.8
Q ss_pred ceeeCCEEEEE-ecCC
Q 042860 32 SVHVGDTIIFK-HKFN 46 (235)
Q Consensus 32 tF~VGDtLvF~-y~~~ 46 (235)
.|++||.|+|+ |..+
T Consensus 37 ~~~vGD~l~l~E~~~g 52 (83)
T 3iuw_A 37 NFQVGDILILEEYMNG 52 (83)
T ss_dssp CCCTTCEEEEEEEETT
T ss_pred CCCCCCEEEEEEccCC
Confidence 59999999995 6433
No 100
>2z0t_A Putative uncharacterized protein PH0355; alpha/beta protein, RNA binding protein, structural genomics, NPPSFA; 1.80A {Pyrococcus horikoshii} PDB: 1s04_A
Probab=26.24 E-value=25 Score=27.00 Aligned_cols=11 Identities=45% Similarity=0.815 Sum_probs=9.8
Q ss_pred CceeeCCEEEE
Q 042860 31 PSVHVGDTIIF 41 (235)
Q Consensus 31 ptF~VGDtLvF 41 (235)
..+++||.|+|
T Consensus 32 ~~ikvGD~I~f 42 (109)
T 2z0t_A 32 RQIKPGDIIIF 42 (109)
T ss_dssp GGCCTTCEEEE
T ss_pred hcCCCCCEEEE
Confidence 36899999999
No 101
>2g23_A PHS, phenoxazinone synthase; copper, metalloprotein, laccase, multicopper oxidase, hexamer; 2.30A {Streptomyces antibioticus} PDB: 3gyr_A
Probab=24.62 E-value=1.1e+02 Score=29.56 Aligned_cols=39 Identities=13% Similarity=0.053 Sum_probs=31.3
Q ss_pred CCCcceEEEcC-CceeEEEEEcCCCCCccccCCceeEEEEecc
Q 042860 73 PNSTSYTWHPS-RPGFFYFTFNNGSLQTCNKSSQKLSIKVSAV 114 (235)
Q Consensus 73 g~st~~~v~L~-~~G~~YFiCssg~~~HC~~~GqKl~I~V~~~ 114 (235)
+...++.++.+ .+|.|-|=|- ...|= .+||-..+.|...
T Consensus 553 g~~~~i~~~~~~~pG~w~~HCH--il~He-d~GMm~~f~V~p~ 592 (612)
T 2g23_A 553 PQGLRVMGKFDGAYGRFMYHCH--LLEHE-DMGMMRPFVVMPP 592 (612)
T ss_dssp SEEEEEEEECCSCCEEEEEEES--SHHHH-TTTCEEEEEEECH
T ss_pred CcEEEEEEEeCCCCccEEEEeC--chhHh-hcCCceEEEECch
Confidence 33345667778 8999999995 88999 9999999999763
No 102
>2vb2_X Copper protein, cation efflux system protein CUSF; cation PI, metal-binding, metal transport, copper tolerance, transport; 1.70A {Escherichia coli} PDB: 2vb3_X
Probab=24.49 E-value=46 Score=24.26 Aligned_cols=15 Identities=20% Similarity=0.483 Sum_probs=13.2
Q ss_pred ceeeCCEEEEEecCC
Q 042860 32 SVHVGDTIIFKHKFN 46 (235)
Q Consensus 32 tF~VGDtLvF~y~~~ 46 (235)
.+++||.|.|.|...
T Consensus 61 ~lk~Gd~V~F~~~~~ 75 (88)
T 2vb2_X 61 EIKTGDKVAFNFVQQ 75 (88)
T ss_dssp CCCTTCEEEEEEEEE
T ss_pred cCCCCCEEEEEEEEe
Confidence 799999999999753
No 103
>2qcp_X Cation efflux system protein CUSF; silver-binding, copper-binding, beta barrel, OB-fold, metall metal resistance, metal-binding; 1.00A {Escherichia coli str} PDB: 1zeq_X 3e6z_X
Probab=22.79 E-value=57 Score=23.26 Aligned_cols=15 Identities=20% Similarity=0.483 Sum_probs=13.2
Q ss_pred ceeeCCEEEEEecCC
Q 042860 32 SVHVGDTIIFKHKFN 46 (235)
Q Consensus 32 tF~VGDtLvF~y~~~ 46 (235)
.+++||.|.|.|...
T Consensus 53 ~lk~Gd~V~F~~~~~ 67 (80)
T 2qcp_X 53 EIKTGDKVAFNFVQQ 67 (80)
T ss_dssp CCCTTCEEEEEEEEE
T ss_pred cCCCCCEEEEEEEEe
Confidence 799999999999753
No 104
>3tas_A Small laccase, multi-copper oxidase; two-domain laccase, oxidoreductase, secreted; HET: PG4; 2.30A {Streptomyces viridosporus} PDB: 3tbb_A 3tbc_A*
Probab=22.32 E-value=3.7e+02 Score=23.06 Aligned_cols=31 Identities=6% Similarity=0.003 Sum_probs=26.4
Q ss_pred CCceeEEEEEcCCCCCccccCCceeEEEEeccCC
Q 042860 83 SRPGFFYFTFNNGSLQTCNKSSQKLSIKVSAVSS 116 (235)
Q Consensus 83 ~~~G~~YFiCssg~~~HC~~~GqKl~I~V~~~~~ 116 (235)
+.+|.+.|-|- ...|= .+||.-.++|...+.
T Consensus 244 ~nPG~w~~HCH--i~~H~-~~GM~~~f~V~~~d~ 274 (313)
T 3tas_A 244 VGAGAWMYHCH--VQSHS-DMGMVGLFLVKKPDG 274 (313)
T ss_dssp TCSEEEEEEEC--SHHHH-HTTCEEEEEEECTTC
T ss_pred CCCEeEEEEeC--ChHHH-HCCCeEEEEEECCCC
Confidence 35899999995 88999 999999999987543
No 105
>2l55_A SILB,silver efflux protein, MFP component of the components proton antiporter metal...; APO form, AG(I)-binding site; NMR {Cupriavidus metallidurans}
Probab=22.25 E-value=77 Score=22.73 Aligned_cols=16 Identities=19% Similarity=0.625 Sum_probs=13.7
Q ss_pred CceeeCCEEEEEecCC
Q 042860 31 PSVHVGDTIIFKHKFN 46 (235)
Q Consensus 31 ptF~VGDtLvF~y~~~ 46 (235)
..+++||.|.|.+...
T Consensus 46 ~~lk~Gd~V~F~~~~~ 61 (82)
T 2l55_A 46 QGLKAGDRVAFSFRLD 61 (82)
T ss_dssp SSCSTTCEEEEEEEEE
T ss_pred hcCCCCCEEEEEEEEC
Confidence 3799999999999864
No 106
>2wgn_B Inhibitor of cysteine peptidase compnd 3; hydrolase inhibitor, dynamics, peptidase inhibitor, cathepsi hydrolase inhibitor; NMR {Pseudomonas aeruginosa}
Probab=22.17 E-value=2.8e+02 Score=21.48 Aligned_cols=72 Identities=7% Similarity=0.135 Sum_probs=39.5
Q ss_pred ceEEEecCCCCCCCCceeeCCEEEEEecCC------------CCceEEecCcccccccCCCCcccccCCCCcceEEEcCC
Q 042860 17 SATIFVDGISEWKNPSVHVGDTIIFKHKFN------------NSNLYIFKNKNAFNLCNFSQATLLTNPNSTSYTWHPSR 84 (235)
Q Consensus 17 A~~~~VGg~~GW~~ptF~VGDtLvF~y~~~------------~HsVv~V~~~~~Y~~Cn~s~p~~~s~g~st~~~v~L~~ 84 (235)
...+++..+...+.-++++||++..+-..+ ..+|++...++.|..-.. .......|+...|+|+..+
T Consensus 23 ~~~~~~~~~~~g~tI~v~~Ge~~~I~L~~NPTTGY~W~~~~~~~~vl~~l~~~~y~~~~~-~~~~vGagG~~~w~f~A~~ 101 (132)
T 2wgn_B 23 KPVVTLDDADDCSPLKLTQGQELVLTLPSNPTTGFRWELRNPAASVLKRLGPEVYSNSEE-DSGLVGSGGESTWRFRVAA 101 (132)
T ss_dssp SSCSCCCCSSCCSCEEECTTCEEEEEECCCTTTSCEEEEEECCTTTEEECCSCCSCSSCS-SCCCSSSSCCEEEEEEECS
T ss_pred CCCEEEecccCCcEEEEcCCCEEEEEeCCCCCCCeEEEEecCCCceEEecccceecCCCC-ccCCcCCCceEEEEEEEcC
Confidence 345667766555444899999998876432 233343223444443311 1112333444557777788
Q ss_pred ceeEE
Q 042860 85 PGFFY 89 (235)
Q Consensus 85 ~G~~Y 89 (235)
+|..-
T Consensus 102 ~G~~~ 106 (132)
T 2wgn_B 102 SGDDR 106 (132)
T ss_dssp CEEEE
T ss_pred CceEE
Confidence 88744
No 107
>2bw4_A Copper-containing nitrite reductase; oxidoreductase, denitrification, catalysis, enzyme mechanism, nitrate assimilation; 0.90A {Achromobacter cycloclastes} SCOP: b.6.1.3 b.6.1.3 PDB: 1nib_A 1nia_A 1nid_A 1nie_A 1nic_A 1nif_A 2bw5_A 2bwd_A 2bwi_A 2nrd_A 2y1a_A 1kcb_A 1rzp_A* 1rzq_A 2avf_A 1as6_A 1aq8_A 1as7_A 1as8_A 2afn_A ...
Probab=22.14 E-value=72 Score=27.79 Aligned_cols=41 Identities=12% Similarity=0.253 Sum_probs=29.7
Q ss_pred ccCCCCcceEEEcCCceeEEEEEcCCCC-CccccCCceeEEEEec
Q 042860 70 LTNPNSTSYTWHPSRPGFFYFTFNNGSL-QTCNKSSQKLSIKVSA 113 (235)
Q Consensus 70 ~s~g~st~~~v~L~~~G~~YFiCssg~~-~HC~~~GqKl~I~V~~ 113 (235)
+..|....+.|+.+++|.|+|.|. .. .|= ..||.-.|.|..
T Consensus 283 l~pGer~~v~v~~~~pG~y~~~~h--~~~~h~-~~Gm~~~~~V~~ 324 (340)
T 2bw4_A 283 IPGGTAGAAFYTFRQPGVYAYVNH--NLIEAF-ELGAAGHFKVTG 324 (340)
T ss_dssp BCTTEEEEEEEECCSCEEEEEEES--SHHHHH-TTSCEEEEEEES
T ss_pred eCCCceEEEEEECCCCeeeEEEcC--chHHHH-hCCCEEEEEECC
Confidence 333433345677789999999994 44 465 789998899876
No 108
>1xne_A Hypothetical protein PF0469; GFT structural genomics, protein structure initiative, NESG, PFR14, alpha and beta protein; NMR {Pyrococcus furiosus} SCOP: b.122.1.6
Probab=21.39 E-value=26 Score=27.03 Aligned_cols=11 Identities=45% Similarity=0.890 Sum_probs=9.9
Q ss_pred ceeeCCEEEEE
Q 042860 32 SVHVGDTIIFK 42 (235)
Q Consensus 32 tF~VGDtLvF~ 42 (235)
.+++||.|+|+
T Consensus 34 ~i~vGD~I~f~ 44 (113)
T 1xne_A 34 DIKRGDKIIFN 44 (113)
T ss_dssp TCCTTCEEEET
T ss_pred ccCCCCEEEEc
Confidence 68999999994
No 109
>3abg_A Bilirubin oxidase; cleavage on PAIR of basic residues, glyco metal-binding, oxidoreductase; HET: NAG BMA NDG; 2.30A {Myrothecium verrucaria} PDB: 2xll_A*
Probab=20.71 E-value=2.6e+02 Score=26.31 Aligned_cols=81 Identities=9% Similarity=0.014 Sum_probs=0.0
Q ss_pred ceeeCCEEEEEecCCC--------CceEEecCcccccccCCCCcccccCCCCcceEEEcCC-ceeEEEEEcCCCCCcccc
Q 042860 32 SVHVGDTIIFKHKFNN--------SNLYIFKNKNAFNLCNFSQATLLTNPNSTSYTWHPSR-PGFFYFTFNNGSLQTCNK 102 (235)
Q Consensus 32 tF~VGDtLvF~y~~~~--------HsVv~V~~~~~Y~~Cn~s~p~~~s~g~st~~~v~L~~-~G~~YFiCssg~~~HC~~ 102 (235)
+++.||+|+.++.++. |-+.+-...++.-.|- ...|.+-.|+|+.+. .|+|||=| ..|- +
T Consensus 72 ~~~~Gd~v~v~v~N~l~~~tsiHwHGl~~~~~~DG~~~~~------i~PG~~~~Y~f~~~~~~GT~WYH~----H~~~-~ 140 (534)
T 3abg_A 72 QVPRGVETVVRFINNAEAPNSVHLHGSFSRAAFDGWAEDI------TEPGSFKDYYYPNRQSARTLWYHD----HAMH-I 140 (534)
T ss_dssp EEETTCCEEEEEEECSSSCBCEEEETCCCCTTTTTCSSSC------BSSCSCCCEEECCCSSSCEEEEEE----CCTT-C
T ss_pred EEeCCcEEEEEEEECCCCCceEEECCCcCCCCCCCCCCCC------CCCCCeEEEEEecCCcceeEEEec----Cccc-c
Q ss_pred ------CCceeEEEEeccCCCCCCCCC
Q 042860 103 ------SSQKLSIKVSAVSSTPSPTPS 123 (235)
Q Consensus 103 ------~GqKl~I~V~~~~~~psp~p~ 123 (235)
.|+.-.+.|........+-|.
T Consensus 141 t~~q~~~Gl~G~liV~~~~~~~~~lp~ 167 (534)
T 3abg_A 141 TAENAYRGQAGLYMLTDPAEDALNLPS 167 (534)
T ss_dssp HHHHHHTBCEEEEEEECTTTTTSCTTC
T ss_pred chhhhhhcceEEEEEECCcccccCCCc
Done!