BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042861
(457 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9UBD5|ORC3_HUMAN Origin recognition complex subunit 3 OS=Homo sapiens GN=ORC3 PE=1
SV=1
Length = 711
Score = 87.0 bits (214), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 82/351 (23%), Positives = 155/351 (44%), Gaps = 60/351 (17%)
Query: 53 FSP-SKLKNVEKPDVEIAKEGGDEGY-GNLRMDAFEVVWSKIESTIKDVLRDINANVFNE 110
F P SK + + P + +G +E LR + ++++W +++S + + ++N N+F+
Sbjct: 13 FKPNSKKRKISLPIEDYFNKGKNEPEDSKLRFETYQLIWQQMKSENERLQEELNKNLFDN 72
Query: 111 IHQWVRDSFSTIRSF-----GMLTFREATQAFPIVTDASSKQLFTGLVLTKNMEFVDDLL 165
+ ++++ S S + G + RE A LVL N+ D L
Sbjct: 73 LIEFLQKSHSGFQKNSRDLGGQIKLREIPTA--------------ALVLGVNV--TDHDL 116
Query: 166 TFEELGRHLKSQGC-HVANLSSLDFTAKSGIGGCLRSLLRQFLVAPLDAAD--------- 215
TF L L++ +V +L + D + L+ L+ Q + +D
Sbjct: 117 TFGSLTEALQNNVTPYVVSLQAKDC---PDMKHFLQKLISQLMDCCVDIKSKEEESVHVT 173
Query: 216 -------ISILASWYREQGNYNNP-----------------VVVIVDDIERCCGSVLSDF 251
+ L+SWY +P VVVI+ D+E VL DF
Sbjct: 174 QRKTHYSMDSLSSWYMTVTQKTDPKMLSKKRTTSSQWQSPPVVVILKDMESFATKVLQDF 233
Query: 252 ILMFSEWVLKIPVILIMGVTTTLDAPRNILLSNVLQCLCPCMFTLGTPSERMDAIIEAVL 311
I++ S+ + + P+ILI G+ T+ +L V LC +F + E + +++ +L
Sbjct: 234 IIISSQHLHEFPLILIFGIATSPIIIHRLLPHAVSSLLCIELFQSLSCKEHLTTVLDKLL 293
Query: 312 VRQCSGFSISHKVAVFMRNYFVRQDGTITSFIRALKIACSQHFSMEPLSII 362
+ F I+ KV + N F+ D ++ +FI+ L+++ +HF +PLS++
Sbjct: 294 LTTQFPFKINEKVLQVLTNIFLYHDFSVQNFIKGLQLSLLEHFYSQPLSVL 344
>sp|Q5DJU3|ORC3_SPECI Origin recognition complex subunit 3 OS=Spermophilus citellus
GN=ORC3 PE=2 SV=1
Length = 713
Score = 82.4 bits (202), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 76/347 (21%), Positives = 153/347 (44%), Gaps = 52/347 (14%)
Query: 53 FSPS-KLKNVEKPDVEIAKEGGDEGY-GNLRMDAFEVVWSKIESTIKDVLRDINANVFNE 110
F P+ K + + P + +G +E LR + + ++W +++ + + ++N N+F+
Sbjct: 13 FKPNFKKRKISVPIEDYFNKGKNESEDSKLRFETYHLMWEQMKCETERLQEELNKNLFDS 72
Query: 111 IHQWVRDSFSTIR-SFGMLTFREATQAFPIVTDASSKQLFTGLVLTKNMEFVDDLLTFEE 169
+ ++++ S + + + G + + P+ LVL N+ D L F
Sbjct: 73 LIEFLQKSHTGFKKNSGDWGHQIKHREIPVA----------ALVLGVNV--TDHDLIFRS 120
Query: 170 LGRHLKSQGC-HVANLSSLDFTAKSGIGGCLRSLLRQFLVAPLDA--------------- 213
L L++ +V +L + D + L+ L+ Q + +DA
Sbjct: 121 LTEALQNNVTPYVVSLQAKDC---PDMKHFLQKLISQLMACCVDAKPKEKESIQVTQKMT 177
Query: 214 -ADISILASWYREQGNYNNP-----------------VVVIVDDIERCCGSVLSDFILMF 255
+ L+SWY +P VV+I+ D+E +L DFI++
Sbjct: 178 HCSMDPLSSWYMTVTQKTHPKISGKKRTTSSKWQSPPVVLILKDMESFTTKILQDFIIIS 237
Query: 256 SEWVLKIPVILIMGVTTTLDAPRNILLSNVLQCLCPCMFTLGTPSERMDAIIEAVLVRQC 315
S+ + + P+ILI G+ T+ +L V LC +F E + +++ +L+
Sbjct: 238 SQHLHEFPLILIFGIATSPIIIHRLLPHAVSSLLCIELFQSLPCKEHLTTVLDKLLLTAQ 297
Query: 316 SGFSISHKVAVFMRNYFVRQDGTITSFIRALKIACSQHFSMEPLSII 362
F IS KV + N F+ D +I +F++ L+++ +HF +PLS++
Sbjct: 298 FPFKISEKVLQILTNIFLYHDFSIQNFVKGLQLSLLEHFYSQPLSVL 344
>sp|Q32PJ3|ORC3_BOVIN Origin recognition complex subunit 3 OS=Bos taurus GN=ORC3 PE=2
SV=1
Length = 712
Score = 79.7 bits (195), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 73/324 (22%), Positives = 145/324 (44%), Gaps = 58/324 (17%)
Query: 78 GNLRMDAFEVVWSKIESTIKDVLRDINANVFNEIHQWVRDSFSTIRSFGM-----LTFRE 132
LR + ++++W +++S + + ++N N+F+ + ++++ S S + + RE
Sbjct: 40 SKLRFETYQLIWQQMKSETERLQEELNKNLFDSLVEFLQTSHSGLWKNSKDWSCEIKLRE 99
Query: 133 ATQAFPIVTDASSKQLFTGLVLTKNMEFVDDLLTFEELGRHLKSQGC-HVANLSSLDFTA 191
A LVL N+ D LT L L++ +V +L + D
Sbjct: 100 IPTA--------------ALVLGVNV--TDHDLTLRSLTEVLQNNVTPYVVSLQAKDC-- 141
Query: 192 KSGIGGCLRSLLRQFLVAPLDAAD----------------ISILASWY------------ 223
+ L+ L+ Q + +D + L++WY
Sbjct: 142 -PDMKHFLQKLVSQLMDCKVDVQSKEKESVQVIQKNVHYSMDSLSAWYMSVTQKTDPKMP 200
Query: 224 REQGNYNN-----PVVVIVDDIERCCGSVLSDFILMFSEWVLKIPVILIMGVTTTLDAPR 278
R++ ++ PVV+I+ D+E VL DFI++ S+ + + P+ILI G+ T+
Sbjct: 201 RKKRTSSSQWQSPPVVLILKDMESFTTKVLQDFIIISSQHLHEFPLILIFGIATSPVVIH 260
Query: 279 NILLSNVLQCLCPCMFTLGTPSERMDAIIEAVLVRQCSGFSISHKVAVFMRNYFVRQDGT 338
+L V LC +F + E + +++ +L+ F +S KV + N F+ D +
Sbjct: 261 RLLPHAVSSLLCIELFQSLSCKEHLTTVLDKLLLTTQFPFKLSEKVLQILTNIFLYHDFS 320
Query: 339 ITSFIRALKIACSQHFSMEPLSII 362
I +FI+ L+++ +HF +PLS++
Sbjct: 321 IQNFIKGLQLSLLEHFYSQPLSVL 344
>sp|Q9JK30|ORC3_MOUSE Origin recognition complex subunit 3 OS=Mus musculus GN=Orc3 PE=1
SV=1
Length = 715
Score = 75.9 bits (185), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 75/321 (23%), Positives = 142/321 (44%), Gaps = 39/321 (12%)
Query: 71 EGGDEGYGNLRMDAFEVVWSKIESTIKDVLRDINANVFNEIHQWVRDSFSTI----RSFG 126
E D LR + + ++W +++S + + ++N N+F+ + +++ S R +G
Sbjct: 40 EELDSEDSKLRFETYSLLWQRMKSETEQLQEELNENLFDNLVDFLQKSHPEFQKNSRDWG 99
Query: 127 -MLTFREATQAFPI----VTD---------ASSKQLFTGLVLTKNMEFVDDLLTFEE--- 169
+ FRE A I VTD + + T V++ + D+ F +
Sbjct: 100 SQMKFREIPTAALILGVNVTDHDVILRSLTETLQNNVTPYVVSLQAKDCPDVKHFLQKFT 159
Query: 170 -------LGRHLKSQGCHVANLSSLDFTAKSGIGGCLRSLLRQFLVAPLDAADISILASW 222
+ RH K V + +L T S C + A AD +
Sbjct: 160 SQLMDCCVDRHSKE----VTSGKALKKTNYSMDSLC------SWYSAVTQKADHKVTIKK 209
Query: 223 YREQGNYNNP-VVVIVDDIERCCGSVLSDFILMFSEWVLKIPVILIMGVTTTLDAPRNIL 281
G++ +P VV+I+ +E VL DFI + S+ + + P+ILI G+ T+ +L
Sbjct: 210 RTASGHWRSPPVVLILKSMESFTSKVLQDFITISSQHLHEFPLILIFGIATSPVIIHRLL 269
Query: 282 LSNVLQCLCPCMFTLGTPSERMDAIIEAVLVRQCSGFSISHKVAVFMRNYFVRQDGTITS 341
+V LC +F + + + +++ +L+ F +S K + N F+ D +I S
Sbjct: 270 PHSVSSLLCVELFQSLSCEQHLTVVLDKLLLTPQFPFKLSKKALQVLTNIFLYHDFSIQS 329
Query: 342 FIRALKIACSQHFSMEPLSII 362
FI+ +K++ +HF +PLS++
Sbjct: 330 FIKGIKLSLLEHFYSQPLSVL 350
>sp|Q4R180|ORC3_RAT Origin recognition complex subunit 3 OS=Rattus norvegicus GN=Orc3
PE=2 SV=1
Length = 711
Score = 75.1 bits (183), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 73/330 (22%), Positives = 141/330 (42%), Gaps = 57/330 (17%)
Query: 71 EGGDEGYGNLRMDAFEVVWSKIESTIKDVLRDINANVFNEIHQWVRDSFSTIR----SFG 126
E D LR + + ++W +I+S + + +N N+F+ + +++ S S + ++G
Sbjct: 33 EELDSEDSKLRFETYRLLWQRIKSETEQLQEGLNENLFDNLVDFLQKSHSEFQKNSGNWG 92
Query: 127 -MLTFREATQAFPIVTDASSKQLFTGLVLTKNMEFVDDLLTFEELGRHLKSQGC-HVANL 184
+ RE A L+L N+ D + F L L + +V +L
Sbjct: 93 SQMRLREIPTA--------------ALILGVNV--TDHDVIFRSLTETLHNNVTPYVVSL 136
Query: 185 SSLDFTAKSGIGGCLRSLLRQFLVAPLD---------------AADISILASWYREQGNY 229
+ D + L+ L + + +D + + L+SWY
Sbjct: 137 QAKDC---PDVKHFLQKLTSELIDCCVDRNSKEEKNDKALRRTSYSMDSLSSWYSTVAQK 193
Query: 230 NNP-----------------VVVIVDDIERCCGSVLSDFILMFSEWVLKIPVILIMGVTT 272
P VV+I+ ++E VL DFI++ S+ + + P+ILI G+ T
Sbjct: 194 TGPKMTSKKRATCSQWQSPPVVLILKNMESFSTKVLQDFIIISSQHLHEFPLILIFGIAT 253
Query: 273 TLDAPRNILLSNVLQCLCPCMFTLGTPSERMDAIIEAVLVRQCSGFSISHKVAVFMRNYF 332
+ +L +V LC +F + E + +++ +L+ F +S K + N F
Sbjct: 254 SPVIIHRLLPHSVSSLLCIELFQSLSCKEHLTVVLDKLLLTPQFPFKLSKKALQVLTNIF 313
Query: 333 VRQDGTITSFIRALKIACSQHFSMEPLSII 362
+ D +I +FI+ LK++ +HF +PLS++
Sbjct: 314 LYHDFSIQNFIKGLKLSLLEHFYSQPLSVL 343
>sp|Q55BR6|ORC3_DICDI Origin recognition complex subunit 3 OS=Dictyostelium discoideum
GN=orcC PE=3 SV=2
Length = 1080
Score = 48.1 bits (113), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/131 (23%), Positives = 64/131 (48%), Gaps = 1/131 (0%)
Query: 232 PVVVIVDDIERCCGSVLSDFILMFSEWVLKIPVILIMGVTTTLDAPRNILLSNVLQCLCP 291
PV+++++D E VLSD I + S + +IP +L ++T+ DA +L V+ L
Sbjct: 414 PVILVIEDFETWNSEVLSDLIHLLSAYRHRIPFVLSFSISTSADAIHKVLPYQVVSLLNL 473
Query: 292 CMFTLGTPSERMDAIIEAVLVRQCSGFSISHKVAVFMRNYFVRQDGTITSFIRALKIACS 351
L + +E + +++ + ++ + IS K +++ F ++++ I L+
Sbjct: 474 KSLHLRSQNEMFEQLVKHLFLKS-QPYIISKKAYLYLYYNFKNSYMSLSTTISVLRHFII 532
Query: 352 QHFSMEPLSII 362
HF LS +
Sbjct: 533 DHFLENGLSYL 543
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.136 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 161,721,660
Number of Sequences: 539616
Number of extensions: 6528403
Number of successful extensions: 16709
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 16697
Number of HSP's gapped (non-prelim): 14
length of query: 457
length of database: 191,569,459
effective HSP length: 121
effective length of query: 336
effective length of database: 126,275,923
effective search space: 42428710128
effective search space used: 42428710128
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 63 (28.9 bits)