Query 042861
Match_columns 457
No_of_seqs 149 out of 198
Neff 6.0
Searched_HMMs 46136
Date Fri Mar 29 10:19:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042861.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042861hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF07034 ORC3_N: Origin recogn 100.0 8E-70 1.7E-74 552.9 28.3 278 71-362 21-330 (330)
2 KOG2538 Origin recognition com 99.8 2E-19 4.2E-24 188.1 7.9 259 82-365 48-380 (578)
3 KOG2538 Origin recognition com 97.5 3.9E-06 8.5E-11 89.2 -6.3 214 24-245 20-241 (578)
4 PRK00411 cdc6 cell division co 97.0 0.22 4.8E-06 51.6 23.1 191 150-350 56-259 (394)
5 TIGR02928 orc1/cdc6 family rep 96.7 0.4 8.7E-06 49.1 22.1 191 151-351 42-252 (365)
6 PTZ00112 origin recognition co 94.5 4.5 9.7E-05 47.3 20.6 166 179-351 817-987 (1164)
7 COG1474 CDC6 Cdc6-related prot 91.2 22 0.00048 37.3 20.1 195 147-350 40-242 (366)
8 PF00308 Bac_DnaA: Bacterial d 89.0 13 0.00028 35.9 14.1 164 161-347 45-213 (219)
9 PF07693 KAP_NTPase: KAP famil 86.9 15 0.00032 36.8 13.6 45 229-273 170-214 (325)
10 PF13191 AAA_16: AAA ATPase do 84.8 3.4 7.5E-05 37.3 7.2 118 148-267 23-185 (185)
11 KOG1514 Origin recognition com 83.3 51 0.0011 37.6 16.5 176 151-338 424-613 (767)
12 TIGR00678 holB DNA polymerase 82.8 26 0.00056 32.4 12.4 61 230-299 95-155 (188)
13 PRK06620 hypothetical protein; 81.1 14 0.0003 35.6 10.1 105 233-346 87-193 (214)
14 PRK04195 replication factor C 80.8 88 0.0019 33.8 19.9 184 103-348 18-205 (482)
15 PRK06893 DNA replication initi 80.8 14 0.00031 35.7 10.1 114 233-348 93-209 (229)
16 PF00004 AAA: ATPase family as 80.4 4 8.6E-05 34.6 5.5 96 162-278 10-116 (132)
17 PF13401 AAA_22: AAA domain; P 80.2 5.5 0.00012 34.0 6.3 106 151-268 6-121 (131)
18 PRK12323 DNA polymerase III su 80.2 78 0.0017 36.1 16.6 184 146-347 35-227 (700)
19 KOG1532 GTPase XAB1, interacts 78.4 34 0.00073 35.1 11.9 125 146-271 16-191 (366)
20 PRK00149 dnaA chromosomal repl 78.0 95 0.0021 33.2 16.2 170 151-346 150-326 (450)
21 PRK08691 DNA polymerase III su 77.6 1.4E+02 0.003 34.3 18.5 108 231-351 119-226 (709)
22 PRK08084 DNA replication initi 77.0 23 0.00049 34.5 10.3 112 234-347 100-214 (235)
23 TIGR00362 DnaA chromosomal rep 76.5 1E+02 0.0023 32.3 17.9 170 151-346 138-314 (405)
24 PF14516 AAA_35: AAA-like doma 76.5 36 0.00079 34.9 12.1 100 161-260 42-158 (331)
25 PRK14086 dnaA chromosomal repl 76.0 93 0.002 35.1 15.7 122 216-347 368-493 (617)
26 KOG2228 Origin recognition com 75.9 65 0.0014 34.0 13.4 139 169-314 69-222 (408)
27 PRK07003 DNA polymerase III su 74.9 1.7E+02 0.0038 34.1 20.4 107 231-350 119-225 (830)
28 TIGR02397 dnaX_nterm DNA polym 74.7 1E+02 0.0022 31.2 17.5 106 231-350 117-223 (355)
29 PRK14950 DNA polymerase III su 73.2 1.4E+02 0.0031 33.2 16.5 105 231-348 120-224 (585)
30 PRK08903 DnaA regulatory inact 72.9 45 0.00098 31.7 11.1 108 233-347 92-201 (227)
31 PF03215 Rad17: Rad17 cell cyc 72.5 42 0.00091 37.0 11.9 121 230-351 131-269 (519)
32 PRK12422 chromosomal replicati 72.2 1.1E+02 0.0024 33.0 14.8 110 233-349 204-317 (445)
33 PLN03025 replication factor C 70.0 1.3E+02 0.0028 30.5 18.3 173 147-352 33-207 (319)
34 PRK05642 DNA replication initi 70.0 36 0.00077 33.1 9.7 114 234-350 100-216 (234)
35 PRK09087 hypothetical protein; 69.7 55 0.0012 31.8 10.9 110 234-347 90-200 (226)
36 TIGR00602 rad24 checkpoint pro 69.0 42 0.00092 37.9 11.2 117 230-353 194-331 (637)
37 PRK00440 rfc replication facto 68.4 1.3E+02 0.0028 29.8 19.5 108 231-351 102-209 (319)
38 PRK14956 DNA polymerase III su 65.9 2.1E+02 0.0046 31.4 17.5 108 230-350 120-227 (484)
39 TIGR03345 VI_ClpV1 type VI sec 63.9 2.1E+02 0.0045 33.7 15.8 199 148-365 594-837 (852)
40 COG0470 HolB ATPase involved i 63.3 85 0.0018 31.1 11.2 106 146-269 21-147 (325)
41 PRK09112 DNA polymerase III su 61.6 1.5E+02 0.0032 31.0 12.8 119 214-348 124-243 (351)
42 PRK14088 dnaA chromosomal repl 61.2 2.4E+02 0.0051 30.3 18.0 173 151-346 132-309 (440)
43 PRK08727 hypothetical protein; 59.3 1.7E+02 0.0038 28.2 15.7 108 233-347 95-206 (233)
44 PRK14957 DNA polymerase III su 59.2 2.9E+02 0.0063 30.8 17.2 107 231-350 119-225 (546)
45 PF01637 Arch_ATPase: Archaeal 58.7 19 0.00041 33.4 5.3 61 217-278 104-170 (234)
46 PHA02544 44 clamp loader, smal 58.6 2E+02 0.0043 28.7 17.9 165 146-347 40-211 (316)
47 PRK14962 DNA polymerase III su 54.7 3.2E+02 0.0069 29.8 17.4 107 231-350 117-223 (472)
48 TIGR03346 chaperone_ClpB ATP-d 53.0 4.4E+02 0.0095 30.9 17.7 195 150-364 596-831 (852)
49 PRK04132 replication factor C 53.0 2.1E+02 0.0044 33.7 13.2 108 231-352 630-738 (846)
50 PRK07764 DNA polymerase III su 52.2 4.5E+02 0.0098 30.8 17.4 104 231-347 120-223 (824)
51 PRK14951 DNA polymerase III su 51.8 4.1E+02 0.0088 30.2 16.1 105 231-349 124-229 (618)
52 TIGR02881 spore_V_K stage V sp 51.6 1.4E+02 0.0031 29.2 10.4 115 233-353 107-238 (261)
53 PF12780 AAA_8: P-loop contain 49.6 1.7E+02 0.0038 29.3 10.7 194 159-361 5-257 (268)
54 PRK10865 protein disaggregatio 48.2 5.2E+02 0.011 30.4 17.7 194 151-363 600-833 (857)
55 PF05729 NACHT: NACHT domain 47.3 1.7E+02 0.0037 25.3 9.3 94 162-261 12-115 (166)
56 TIGR03015 pepcterm_ATPase puta 46.5 2.8E+02 0.006 26.7 16.2 193 151-355 45-248 (269)
57 PRK12402 replication factor C 44.8 2.8E+02 0.0062 27.6 11.6 121 216-350 109-231 (337)
58 PF13177 DNA_pol3_delta2: DNA 44.1 1.7E+02 0.0038 26.6 9.1 53 215-267 86-138 (162)
59 KOG2227 Pre-initiation complex 43.6 3.9E+02 0.0085 29.5 12.6 211 73-314 112-341 (529)
60 TIGR00635 ruvB Holliday juncti 43.2 1.9E+02 0.0041 28.7 10.0 94 231-331 81-190 (305)
61 PF01337 Barstar: Barstar (bar 42.6 84 0.0018 25.7 6.1 75 183-260 2-80 (90)
62 PRK14087 dnaA chromosomal repl 42.2 4.7E+02 0.01 28.2 20.0 177 151-351 143-325 (450)
63 PRK08058 DNA polymerase III su 42.1 3.8E+02 0.0082 27.4 12.1 81 215-302 94-174 (329)
64 TIGR02639 ClpA ATP-dependent C 40.7 6.1E+02 0.013 29.1 17.6 190 151-364 486-717 (731)
65 PRK14952 DNA polymerase III su 40.5 5.8E+02 0.013 28.7 19.2 107 231-350 118-224 (584)
66 PRK14949 DNA polymerase III su 40.3 7.2E+02 0.016 29.7 20.5 107 230-350 118-225 (944)
67 PRK14959 DNA polymerase III su 40.3 2.4E+02 0.0051 32.1 10.9 105 231-348 119-223 (624)
68 cd00009 AAA The AAA+ (ATPases 38.1 2.3E+02 0.0049 23.3 13.0 58 230-289 83-143 (151)
69 PRK13342 recombination factor 35.8 5.5E+02 0.012 27.1 22.2 111 231-352 92-203 (413)
70 KOG2303 Predicted NAD synthase 35.4 57 0.0012 35.8 4.9 63 148-224 506-568 (706)
71 CHL00181 cbbX CbbX; Provisiona 34.9 4.9E+02 0.011 26.2 11.4 113 234-353 125-254 (287)
72 PRK07940 DNA polymerase III su 33.7 6E+02 0.013 26.9 14.0 70 230-306 116-185 (394)
73 PRK09111 DNA polymerase III su 32.5 7.7E+02 0.017 27.8 18.9 105 231-349 132-237 (598)
74 CHL00195 ycf46 Ycf46; Provisio 32.1 6.4E+02 0.014 27.7 12.4 124 216-353 68-193 (489)
75 TIGR02902 spore_lonB ATP-depen 31.1 3E+02 0.0065 30.3 9.8 110 233-351 177-310 (531)
76 PF06144 DNA_pol3_delta: DNA p 30.4 2.7E+02 0.006 24.7 8.0 96 231-333 57-157 (172)
77 PRK13341 recombination factor 30.4 4.4E+02 0.0095 30.5 11.2 109 231-351 109-223 (725)
78 COG0593 DnaA ATPase involved i 29.0 7.5E+02 0.016 26.6 15.5 133 216-361 167-303 (408)
79 PRK07133 DNA polymerase III su 28.4 9.8E+02 0.021 27.7 17.7 121 216-349 103-223 (725)
80 PRK07471 DNA polymerase III su 28.1 1.4E+02 0.003 31.3 6.4 80 216-302 126-205 (365)
81 PRK11034 clpA ATP-dependent Cl 27.6 1E+03 0.022 27.7 16.1 177 151-346 490-708 (758)
82 PF12731 Mating_N: Mating-type 27.1 90 0.0019 26.4 3.9 36 82-117 36-71 (95)
83 PRK08699 DNA polymerase III su 27.0 2.2E+02 0.0048 29.3 7.5 69 232-307 114-182 (325)
84 COG1366 SpoIIAA Anti-anti-sigm 25.5 2E+02 0.0043 24.5 5.9 44 231-274 45-88 (117)
85 CHL00095 clpC Clp protease ATP 24.4 1.2E+03 0.025 27.3 17.7 193 151-364 541-787 (821)
86 PRK00080 ruvB Holliday junctio 23.7 5.4E+02 0.012 26.0 9.6 106 232-347 103-224 (328)
87 PHA00438 hypothetical protein 22.8 1.3E+02 0.0028 24.9 3.8 46 305-350 3-65 (81)
88 PF10088 DUF2326: Uncharacteri 22.3 1.6E+02 0.0035 26.5 4.9 56 214-273 48-105 (140)
89 PRK07994 DNA polymerase III su 22.2 1.2E+03 0.026 26.6 17.2 107 230-350 118-225 (647)
90 PRK07399 DNA polymerase III su 22.0 8.6E+02 0.019 24.8 13.0 84 215-306 108-191 (314)
91 PRK05564 DNA polymerase III su 21.8 8.2E+02 0.018 24.5 12.4 65 231-302 93-157 (313)
92 cd04115 Rab33B_Rab33A Rab33B/R 21.1 3.4E+02 0.0073 24.1 6.8 82 103-206 86-168 (170)
93 PRK14961 DNA polymerase III su 20.4 9.6E+02 0.021 24.8 17.3 106 231-350 119-225 (363)
94 PRK14965 DNA polymerase III su 20.4 1.2E+03 0.026 26.0 17.4 105 232-349 120-224 (576)
95 PRK05563 DNA polymerase III su 20.3 1.2E+03 0.026 25.9 18.3 123 216-351 104-226 (559)
96 PF14532 Sigma54_activ_2: Sigm 20.1 2.8E+02 0.0062 24.1 5.9 66 232-298 70-137 (138)
No 1
>PF07034 ORC3_N: Origin recognition complex (ORC) subunit 3 N-terminus; InterPro: IPR020795 The Origin Recognition Complex (ORC) is a six-subunit ATP-dependent DNA-binding complex encoded in yeast by ORC1-6 []. ORC is a central component for eukaryotic DNA replication, and binds chromatin at replication origins throughout the cell cycle []. ORC directs DNA replication throughout the genome and is required for its initiation [, , ]. ORC bound at replication origins serves as the foundation for assembly of the pre-replicative complex (pre-RC), which includes Cdc6, Tah11 (aka Cdt1), and the Mcm2-7 complex [, , ]. Pre-RC assembly during G1 is required for replication licensing of chromosomes prior to DNA synthesis during S phase [, , ]. Cell cycle-regulated phosphorylation of Orc2, Orc6, Cdc6, and MCM by the cyclin-dependent protein kinase Cdc28 regulates initiation of DNA replication, including blocking reinitiation in G2/M phase [, , , ]. In yeast, ORC also plays a role in the establishment of silencing at the mating-type loci Hidden MAT Left (HML) and Hidden MAT Right (HMR) [, , ]. ORC participates in the assembly of transcriptionally silent chromatin at HML and HMR by recruiting the Sir1 silencing protein to the HML and HMR silencers [, , ]. Both Orc1 and Orc5 bind ATP, though only Orc1 has ATPase activity []. The binding of ATP by Orc1 is required for ORC binding to DNA and is essential for cell viability []. The ATPase activity of Orc1 is involved in formation of the pre-RC [, , ]. ATP binding by Orc5 is crucial for the stability of ORC as a whole. Only the Orc1-5 subunits are required for origin binding; Orc6 is essential for maintenance of pre-RCs once formed []. Interactions within ORC suggest that Orc2-3-6 may form a core complex []. ORC homologues have been found in various eukaryotes, including fission yeast, insects, amphibians, and humans []. ; GO: 0003677 DNA binding, 0006260 DNA replication, 0005664 nuclear origin of replication recognition complex
Probab=100.00 E-value=8e-70 Score=552.86 Aligned_cols=278 Identities=33% Similarity=0.564 Sum_probs=254.9
Q ss_pred cCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhcccccccccchhhhccccCccccccccCccce
Q 042861 71 EGGDEGYGNLRMDAFEVVWSKIESTIKDVLRDINANVFNEIHQWVRDSFSTIRSFGMLTFREATQAFPIVTDASSKQLFT 150 (457)
Q Consensus 71 ~~e~~~~~~~R~~~y~~~W~~~~~~Iq~il~~~n~~v~~~I~~fI~~~~~~~~s~~~p~~~~a~~~~~~~~~~~~~~IPT 150 (457)
++|++.+++.||++|+++|++++++||+|++++|+++|++|++||++++......+. +|.+....++|||
T Consensus 21 ~~~~~~~~~~R~~~y~~~W~~~~~~Iq~il~~~n~~~f~~l~~Fi~~~~~~~~~~~~----------~~~~~~~~~~IPt 90 (330)
T PF07034_consen 21 EDEEEEAVQLRYEAYQKLWSKIESRIQEILRELNSKLFDDLVDFIRNSHSSDESSAR----------DWASQMNSREIPT 90 (330)
T ss_pred cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccccc----------cccccccccccch
Confidence 336677999999999999999999999999999999999999999999865432211 2333445589999
Q ss_pred EEEecCCCCCCchHHHHHHHHHHhhhc-CcEEEEeeCCCCCCCCChhHHHHHHHHHHHcCCCC---------------cc
Q 042861 151 GLVLTKNMEFVDDLLTFEELGRHLKSQ-GCHVANLSSLDFTAKSGIGGCLRSLLRQFLVAPLD---------------AA 214 (457)
Q Consensus 151 AllltGnin~~dh~~~F~~L~~~L~~~-~~~Vv~L~s~dc~~~~~i~~~Lk~ll~qli~~~~~---------------~y 214 (457)
|+|++| +|++||..+|++|.++|+++ +|+||+|+|+||+ ++|++||++++||++...+ .|
T Consensus 91 A~lltG-vN~~dh~~~F~~L~~~L~~~~~~~vv~L~S~dc~---~lk~~lk~iv~ql~~~~~~~~~~~~~~~~~~~~~~y 166 (330)
T PF07034_consen 91 ALLLTG-VNIPDHDLLFEQLSERLQSSVGPYVVRLNSKDCS---NLKSALKSIVRQLMSDKSDVDEDEEEEEKGQRRLNY 166 (330)
T ss_pred HHHHhC-CCCccHHHHHHHHHHHHHhCCCcEEEEEecccch---HHHHHHHHHHHHHHhcccccccccchhhcccCcCCC
Confidence 999999 89999999999999999987 7999999999999 7999999999999986542 47
Q ss_pred cHHHHHHHHHhhc----------------CCCCCEEEEecCccccCchhHHHHHHHHHHhhccCCeEEEEeecCCChhHh
Q 042861 215 DISILASWYREQG----------------NYNNPVVVIVDDIERCCGSVLSDFILMFSEWVLKIPVILIMGVTTTLDAPR 278 (457)
Q Consensus 215 Dl~~L~~Wy~~~~----------------~~~~~lVvil~D~Esfd~~VL~DlI~llSs~~~~IP~vLVfGIATs~~~~~ 278 (457)
||+.|++||...+ +.++||||||+|+|+||++||+|||.+||+|+++|||+|||||||++++||
T Consensus 167 d~~~L~~wy~~~~~~~~~~~~~~~~~~~~~~~~~lVIi~eD~EsF~~~VL~dlI~ils~~~~~lP~vli~GiaTs~~~~~ 246 (330)
T PF07034_consen 167 DMDILAAWYQNNTKKNDSPSKQKNFSSSRDKSPPLVIIFEDFESFDSQVLQDLILILSSYLDRLPFVLIFGIATSVEAFH 246 (330)
T ss_pred CHHHHHHHHHhhhccccchhhhcccccccccCCCEEEEEcccccCCHHHHHHHHHHHHhccCCcCEEEEEecCCChHHHH
Confidence 9999999998211 234799999999999999999999999999999999999999999999999
Q ss_pred hhccHHHHhhcccceeeeCCcchHHHHHHHHHHhcCCCceeeChhhHHHHHHHHHhccCCHHHHHHHHHHHHHhhhccCc
Q 042861 279 NILLSNVLQCLCPCMFTLGTPSERMDAIIEAVLVRQCSGFSISHKVAVFMRNYFVRQDGTITSFIRALKIACSQHFSMEP 358 (457)
Q Consensus 279 ~~Lp~s~~slL~~~~F~~~s~~~~l~~I~e~vll~~~~~f~Lg~~v~~~L~d~F~~~d~Sv~~fi~~LK~a~M~HFy~nP 358 (457)
++||++++++|++++|++.++++++++|+++++++++.||+|||+++++|+++|++||+||++||++||||||+|||+||
T Consensus 247 ~~Lp~~~~~~L~~~~F~~~~~~~~l~~v~~~~l~~~~~~~~l~~~~~~~L~~~f~~~~~Sv~~fi~~lk~~~m~HF~~nP 326 (330)
T PF07034_consen 247 SRLPRSTLSLLRIKKFQLQSSSEILERVLEKVLLSPDFPFKLGPRVLQFLLDRFLDHDFSVDSFISGLKYAYMEHFYSNP 326 (330)
T ss_pred hhCCHHHHhhcCceEEEeCChHHHHHHHHHHHhcCCCCCceECHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccc
Q 042861 359 LSII 362 (457)
Q Consensus 359 LSvL 362 (457)
||+|
T Consensus 327 LS~L 330 (330)
T PF07034_consen 327 LSVL 330 (330)
T ss_pred cccC
Confidence 9986
No 2
>KOG2538 consensus Origin recognition complex, subunit 3 [Replication, recombination and repair]
Probab=99.78 E-value=2e-19 Score=188.13 Aligned_cols=259 Identities=28% Similarity=0.367 Sum_probs=197.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhcccccccccchhhhccccCccccccccCccceEEEecCCCCCC
Q 042861 82 MDAFEVVWSKIESTIKDVLRDINANVFNEIHQWVRDSFSTIRSFGMLTFREATQAFPIVTDASSKQLFTGLVLTKNMEFV 161 (457)
Q Consensus 82 ~~~y~~~W~~~~~~Iq~il~~~n~~v~~~I~~fI~~~~~~~~s~~~p~~~~a~~~~~~~~~~~~~~IPTAllltGnin~~ 161 (457)
+..+.+.|...+..+.+-+....+++.+.+.++|+..... ++....||||.+.+| ++.+
T Consensus 48 ~s~~ek~~~~~~~~v~d~~~~~fs~~~~~l~d~v~~~~~~--------------------qi~d~l~~t~a~~~~-~~~t 106 (578)
T KOG2538|consen 48 ESESEKIVNVLEDEVEDEDHRFFSTLVEKLFDNVRSKIEK--------------------QIEDVLIPTAALVLG-GFHT 106 (578)
T ss_pred cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--------------------cccceeeccchhhhc-ccch
Confidence 4456677888888888889999999999999999975321 123457999999999 6789
Q ss_pred chHHHHHHHHHHhhhc-CcEEEEeeCCCCCCCCChhHHHHHHHHHHHcCCCCc----------ccHHHHHHHHHhh----
Q 042861 162 DDLLTFEELGRHLKSQ-GCHVANLSSLDFTAKSGIGGCLRSLLRQFLVAPLDA----------ADISILASWYREQ---- 226 (457)
Q Consensus 162 dh~~~F~~L~~~L~~~-~~~Vv~L~s~dc~~~~~i~~~Lk~ll~qli~~~~~~----------yDl~~L~~Wy~~~---- 226 (457)
||+..|+.+++.+..+ .+.|..|.+++|+ .++..++.++.+.+....++ +-++-.++|+...
T Consensus 107 ~~~~~F~S~tk~~~~~~sa~v~~L~s~~~~---s~k~~l~~mv~~~~~~~~~~~~~Eee~e~e~~~d~~~s~l~t~~~n~ 183 (578)
T KOG2538|consen 107 DHLLSFESLTKSLALNLSAAVRSLQSLLCA---SSKQLLTAMVLTRMLEMVDDLLTEEELELEDKSDGDRSKLSTMQFNA 183 (578)
T ss_pred HHHhhhhHHHHHHHhcchhHHHHhHhhccc---chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhccc
Confidence 9999999999998766 6899999999999 69999999998888765321 1144444454322
Q ss_pred ----------cC---CCCCEEEEecCccccCchhHHHHHHHHHH------------------------------------
Q 042861 227 ----------GN---YNNPVVVIVDDIERCCGSVLSDFILMFSE------------------------------------ 257 (457)
Q Consensus 227 ----------~~---~~~~lVvil~D~Esfd~~VL~DlI~llSs------------------------------------ 257 (457)
+. ..|++|+|++|+|+|+..||||||.++++
T Consensus 184 ~s~~~~~~~~~~~~~~~p~~V~iLkd~~sfn~nvlq~~iIil~~aKOG~h~d~E~I~~lpsfr~yvEk~~~~kaiL~~~~ 263 (578)
T KOG2538|consen 184 KSGVLSLLRNFDRQFVSPADVTILKDVESFNKNVLQDFIIILSSALCLDHVDTERIRRLPSFRPYVEKNLRQKAILTLDR 263 (578)
T ss_pred hhHHHHHHhhhhhhhCCccceEEecchHhHhhhcccceEEEehhhhccchhhHHHHhcCCcchhhHHhhhhhhhhhhhHH
Confidence 11 35799999999999999999999998762
Q ss_pred hhccCCeEEEEeecCCChhHhhhcc--------HHHHhhcccceeeeCCcchHHHHHHHHHHhcCCCcee--eChhhHHH
Q 042861 258 WVLKIPVILIMGVTTTLDAPRNILL--------SNVLQCLCPCMFTLGTPSERMDAIIEAVLVRQCSGFS--ISHKVAVF 327 (457)
Q Consensus 258 ~~~~IP~vLVfGIATs~~~~~~~Lp--------~s~~slL~~~~F~~~s~~~~l~~I~e~vll~~~~~f~--Lg~~v~~~ 327 (457)
|..+.|+-++.|+.+--.+++..|. ....-.++.+++-..++ ++.+.+.-..++..+..|. +++.+..|
T Consensus 264 y~~k~~i~l~~~~~~~~~l~r~~L~~l~~~~~l~~~l~~~cL~r~i~sT~-e~~~~~~ml~fL~~d~~~t~~i~~~c~~~ 342 (578)
T KOG2538|consen 264 YLKKVPIQLLEGLLYAHDLFRKILSTLDGKLNLVRALYRLCLERAILSTP-EYMDALQMLVFLKKDEFFTNFISEKCAAF 342 (578)
T ss_pred HHHHhhHHHHhhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCH-HHHHHHHHHHHhcchhhhhhhHHHHHHHH
Confidence 4456677777777766666666665 55555666667766666 7888888788888887777 88888888
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHhhhccCcccccccc
Q 042861 328 MRNYFVRQDGTITSFIRALKIACSQHFSMEPLSIILKG 365 (457)
Q Consensus 328 L~d~F~~~d~Sv~~fi~~LK~a~M~HFy~nPLSvL~~~ 365 (457)
|+++|+.+..+++.|+..++-++-+||-.+|+..+...
T Consensus 343 lr~~~~~~l~~~~~~v~~~~~~~qq~~~~e~~q~l~~~ 380 (578)
T KOG2538|consen 343 LRSYFLKILGTLDSFVETLKAAIQQHFPLEELQILLEL 380 (578)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHhccCcchHHHHHHhc
Confidence 88888888888888888888888888866666555443
No 3
>KOG2538 consensus Origin recognition complex, subunit 3 [Replication, recombination and repair]
Probab=97.46 E-value=3.9e-06 Score=89.25 Aligned_cols=214 Identities=34% Similarity=0.373 Sum_probs=137.1
Q ss_pred CceEEEeecCCCCCCCCCCccccccccccCCCCCCCCCCCCcccccccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 042861 24 QPFFVLHEASSRKPERTSTGTVKTRKKIDFSPSKLKNVEKPDVEIAKEGGDEGYGNLRMDAFEVVWSKIESTIKDVLRDI 103 (457)
Q Consensus 24 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~e~~~~~~~R~~~y~~~W~~~~~~Iq~il~~~ 103 (457)
.+++---+++++..+++.+|....+.+|+ |++ +|..+......+ +.+.......+..++..+|.+.+.+|.+.+..-
T Consensus 20 r~~~~~~~~~p~~~k~~~~g~~v~~~~i~-s~~-ek~~~~~~~~v~-d~~~~~fs~~~~~l~d~v~~~~~~qi~d~l~~t 96 (578)
T KOG2538|consen 20 RTAKNDIRASPGNHKGKLTGKVVSKQRIE-SES-EKIVNVLEDEVE-DEDHRFFSTLVEKLFDNVRSKIEKQIEDVLIPT 96 (578)
T ss_pred cchhcccccCccccccCcccceeeeehhc-ccC-HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhccccceeecc
Confidence 33333334556566666777777777776 455 677777666643 226677788888888899999998888888777
Q ss_pred hHHHHHHHHHHHhhhcccccccccchhhhccccCccccccccCccceEEEecCCCCCCchHHHHHHHHHHhhhcCcEEEE
Q 042861 104 NANVFNEIHQWVRDSFSTIRSFGMLTFREATQAFPIVTDASSKQLFTGLVLTKNMEFVDDLLTFEELGRHLKSQGCHVAN 183 (457)
Q Consensus 104 n~~v~~~I~~fI~~~~~~~~s~~~p~~~~a~~~~~~~~~~~~~~IPTAllltGnin~~dh~~~F~~L~~~L~~~~~~Vv~ 183 (457)
++-++.-..+++...+.+....+......+...++........+.=+++|.+.+-...|....++++..+...++++ ..
T Consensus 97 ~a~~~~~~~t~~~~~F~S~tk~~~~~~sa~v~~L~s~~~~s~k~~l~~mv~~~~~~~~~~~~~Eee~e~e~~~d~~~-s~ 175 (578)
T KOG2538|consen 97 AALVLGGFHTDHLLSFESLTKSLALNLSAAVRSLQSLLCASSKQLLTAMVLTRMLEMVDDLLTEEELELEDKSDGDR-SK 175 (578)
T ss_pred chhhhcccchHHHhhhhHHHHHHHhcchhHHHHhHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh-hh
Confidence 77777766666666554321111111111111122100111122333444433222334455666655555555667 88
Q ss_pred eeCCCCCCCCChhHHHHHHHHHHHcCCCCcccHHHHHHHHHhhcCCCCCEEEEec--------CccccCc
Q 042861 184 LSSLDFTAKSGIGGCLRSLLRQFLVAPLDAADISILASWYREQGNYNNPVVVIVD--------DIERCCG 245 (457)
Q Consensus 184 L~s~dc~~~~~i~~~Lk~ll~qli~~~~~~yDl~~L~~Wy~~~~~~~~~lVvil~--------D~Esfd~ 245 (457)
|..-.|..++++.+.++..-+|+... .++-+|.+|++.+.+--.++|||+. |.|.+..
T Consensus 176 l~t~~~n~~s~~~~~~~~~~~~~~~p----~~V~iLkd~~sfn~nvlq~~iIil~~aKOG~h~d~E~I~~ 241 (578)
T KOG2538|consen 176 LSTMQFNAKSGVLSLLRNFDRQFVSP----ADVTILKDVESFNKNVLQDFIIILSSALCLDHVDTERIRR 241 (578)
T ss_pred hhhhhccchhHHHHHHhhhhhhhCCc----cceEEecchHhHhhhcccceEEEehhhhccchhhHHHHhc
Confidence 88999988788888888888888765 6888999999988887889999999 9999884
No 4
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=96.98 E-value=0.22 Score=51.59 Aligned_cols=191 Identities=14% Similarity=0.126 Sum_probs=118.2
Q ss_pred eEEEecCCCCCCchHHHHHHHHHHhhhcC--cEEEEeeCCCCCCCCChhHHHHHHHHHHHcCC-C-Cccc----HHHHHH
Q 042861 150 TGLVLTKNMEFVDDLLTFEELGRHLKSQG--CHVANLSSLDFTAKSGIGGCLRSLLRQFLVAP-L-DAAD----ISILAS 221 (457)
Q Consensus 150 TAllltGnin~~dh~~~F~~L~~~L~~~~--~~Vv~L~s~dc~~~~~i~~~Lk~ll~qli~~~-~-~~yD----l~~L~~ 221 (457)
..+++.| ..-++--.+...+...+++.+ ..++.++..++. +....++.++.++.+.. . ...+ ++.+..
T Consensus 56 ~~~lI~G-~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~---~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~ 131 (394)
T PRK00411 56 LNVLIYG-PPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDR---TRYAIFSEIARQLFGHPPPSSGLSFDELFDKIAE 131 (394)
T ss_pred CeEEEEC-CCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCC---CHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHH
Confidence 3566777 222455567788888886543 577878877776 56778888888886521 1 1112 334444
Q ss_pred HHHhhcCCCCCEEEEecCccccC----chhHHHHHHHHHHhhccCCeEEEEeecCCChhHhhhccHHHHhhcccceeeeC
Q 042861 222 WYREQGNYNNPVVVIVDDIERCC----GSVLSDFILMFSEWVLKIPVILIMGVTTTLDAPRNILLSNVLQCLCPCMFTLG 297 (457)
Q Consensus 222 Wy~~~~~~~~~lVvil~D~Esfd----~~VL~DlI~llSs~~~~IP~vLVfGIATs~~~~~~~Lp~s~~slL~~~~F~~~ 297 (457)
+... ...++||+|++++.+. ..+|..|+.+...+.. .+ +.++||+...+.... +...+.+.+....+.++
T Consensus 132 ~l~~---~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~~~~-~~-v~vI~i~~~~~~~~~-l~~~~~s~~~~~~i~f~ 205 (394)
T PRK00411 132 YLDE---RDRVLIVALDDINYLFEKEGNDVLYSLLRAHEEYPG-AR-IGVIGISSDLTFLYI-LDPRVKSVFRPEEIYFP 205 (394)
T ss_pred HHHh---cCCEEEEEECCHhHhhccCCchHHHHHHHhhhccCC-Ce-EEEEEEECCcchhhh-cCHHHHhcCCcceeecC
Confidence 4332 3468999999999885 5667776655444322 24 345577776665444 66666677776666665
Q ss_pred Ccc-hHHHHHHHHHHhcCCCceeeChhhHHHHHHHHHhccCCHHHHHHHHHHHH
Q 042861 298 TPS-ERMDAIIEAVLVRQCSGFSISHKVAVFMRNYFVRQDGTITSFIRALKIAC 350 (457)
Q Consensus 298 s~~-~~l~~I~e~vll~~~~~f~Lg~~v~~~L~d~F~~~d~Sv~~fi~~LK~a~ 350 (457)
+-. +-+..+++.-+.....+-.+++.+++++..........+..-+..++.|.
T Consensus 206 py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~ 259 (394)
T PRK00411 206 PYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAG 259 (394)
T ss_pred CCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 544 44555555554332112357889999998877766677766666666554
No 5
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=96.71 E-value=0.4 Score=49.09 Aligned_cols=191 Identities=12% Similarity=0.127 Sum_probs=113.5
Q ss_pred EEEecCCCCCCchHHHHHHHHHHhhhc----C--cEEEEeeCCCCCCCCChhHHHHHHHHHHHc--CCC--Cccc----H
Q 042861 151 GLVLTKNMEFVDDLLTFEELGRHLKSQ----G--CHVANLSSLDFTAKSGIGGCLRSLLRQFLV--APL--DAAD----I 216 (457)
Q Consensus 151 AllltGnin~~dh~~~F~~L~~~L~~~----~--~~Vv~L~s~dc~~~~~i~~~Lk~ll~qli~--~~~--~~yD----l 216 (457)
.+++.|-.. +.--.+...+...+.+. + ..++.++..++. +....++.++.++.. ... ..++ +
T Consensus 42 ~i~I~G~~G-tGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~---~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~ 117 (365)
T TIGR02928 42 NVFIYGKTG-TGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILD---TLYQVLVELANQLRGSGEEVPTTGLSTSEVF 117 (365)
T ss_pred cEEEECCCC-CCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCC---CHHHHHHHHHHHHhhcCCCCCCCCCCHHHHH
Confidence 456666112 34445666666666432 1 467777777665 567888999998863 111 1122 3
Q ss_pred HHHHHHHHhhcCCCCCEEEEecCccccC---chhHHHHHHHHHHhhccC--CeEEEEeecCCChhHhhhccHHHHhhccc
Q 042861 217 SILASWYREQGNYNNPVVVIVDDIERCC---GSVLSDFILMFSEWVLKI--PVILIMGVTTTLDAPRNILLSNVLQCLCP 291 (457)
Q Consensus 217 ~~L~~Wy~~~~~~~~~lVvil~D~Esfd---~~VL~DlI~llSs~~~~I--P~vLVfGIATs~~~~~~~Lp~s~~slL~~ 291 (457)
+.+..... ...+++||+|++++.+. ..+|..|..+.. ...+ +=+.++||++.++... .|...+.+.+..
T Consensus 118 ~~l~~~l~---~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~--~~~~~~~~v~lI~i~n~~~~~~-~l~~~~~s~~~~ 191 (365)
T TIGR02928 118 RRLYKELN---ERGDSLIIVLDEIDYLVGDDDDLLYQLSRARS--NGDLDNAKVGVIGISNDLKFRE-NLDPRVKSSLCE 191 (365)
T ss_pred HHHHHHHH---hcCCeEEEEECchhhhccCCcHHHHhHhcccc--ccCCCCCeEEEEEEECCcchHh-hcCHHHhccCCc
Confidence 33443332 23568999999999993 344554443211 2222 2345566777776554 566666667766
Q ss_pred ceeeeCCcc-hHHHHHHHHHHhcCCCceeeChhhHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 042861 292 CMFTLGTPS-ERMDAIIEAVLVRQCSGFSISHKVAVFMRNYFVRQDGTITSFIRALKIACS 351 (457)
Q Consensus 292 ~~F~~~s~~-~~l~~I~e~vll~~~~~f~Lg~~v~~~L~d~F~~~d~Sv~~fi~~LK~a~M 351 (457)
..+.+++-. +-+.+|++.-+.....+-.+.+.+++++.....+.+..+...+..++.|.+
T Consensus 192 ~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al~~l~~a~~ 252 (365)
T TIGR02928 192 EEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAIDLLRVAGE 252 (365)
T ss_pred ceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 666666544 445566655553221233478888888888877777888777777777654
No 6
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=94.50 E-value=4.5 Score=47.27 Aligned_cols=166 Identities=15% Similarity=0.275 Sum_probs=105.6
Q ss_pred cEEEEeeCCCCCCCCChhHHHHHHHHHHHcCCCC-c-ccHHHHHHHHHhh-cCCCCCEEEEecCccccCchhHHHHHHHH
Q 042861 179 CHVANLSSLDFTAKSGIGGCLRSLLRQFLVAPLD-A-ADISILASWYREQ-GNYNNPVVVIVDDIERCCGSVLSDFILMF 255 (457)
Q Consensus 179 ~~Vv~L~s~dc~~~~~i~~~Lk~ll~qli~~~~~-~-yDl~~L~~Wy~~~-~~~~~~lVvil~D~Esfd~~VL~DlI~ll 255 (457)
..+|.++..... +....++.+.++|.+.... . ...+.|...+... ......+||+|+|++.+... =++++.-|
T Consensus 817 f~vVYINCm~Ls---tp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK-~QDVLYnL 892 (1164)
T PTZ00112 817 FNVFEINGMNVV---HPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITK-TQKVLFTL 892 (1164)
T ss_pred ceEEEEeCCccC---CHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCcc-HHHHHHHH
Confidence 467777765443 4566778888888543321 1 2245565555432 12234679999999999865 35555545
Q ss_pred HHhhccCC-eEEEEeecCCChhHhhhccHHHHhhcccceeeeCCc-chHHHHHHHHHHhcCCCceeeChhhHHHHHHHHH
Q 042861 256 SEWVLKIP-VILIMGVTTTLDAPRNILLSNVLQCLCPCMFTLGTP-SERMDAIIEAVLVRQCSGFSISHKVAVFMRNYFV 333 (457)
Q Consensus 256 Ss~~~~IP-~vLVfGIATs~~~~~~~Lp~s~~slL~~~~F~~~s~-~~~l~~I~e~vll~~~~~f~Lg~~v~~~L~d~F~ 333 (457)
-.|...-. -+.|+||+++.+.....+| .+.++|....+.+.+- .+-+.+|++.-+... .-.+.+.+++++...-.
T Consensus 893 FR~~~~s~SKLiLIGISNdlDLperLdP-RLRSRLg~eeIvF~PYTaEQL~dILk~RAe~A--~gVLdDdAIELIArkVA 969 (1164)
T PTZ00112 893 FDWPTKINSKLVLIAISNTMDLPERLIP-RCRSRLAFGRLVFSPYKGDEIEKIIKERLENC--KEIIDHTAIQLCARKVA 969 (1164)
T ss_pred HHHhhccCCeEEEEEecCchhcchhhhh-hhhhccccccccCCCCCHHHHHHHHHHHHHhC--CCCCCHHHHHHHHHhhh
Confidence 55543211 2568899999888886666 5556666544333332 255555555544432 23589999999998777
Q ss_pred hccCCHHHHHHHHHHHHH
Q 042861 334 RQDGTITSFIRALKIACS 351 (457)
Q Consensus 334 ~~d~Sv~~fi~~LK~a~M 351 (457)
...+.+..-+..|+.|..
T Consensus 970 q~SGDARKALDILRrAgE 987 (1164)
T PTZ00112 970 NVSGDIRKALQICRKAFE 987 (1164)
T ss_pred hcCCHHHHHHHHHHHHHh
Confidence 888889999999998885
No 7
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=91.16 E-value=22 Score=37.33 Aligned_cols=195 Identities=16% Similarity=0.198 Sum_probs=122.5
Q ss_pred ccceEEEecCCCCCCchHHHHHHHHHHhhhcC--cEEEEeeCCCCCCCCChhHHHHHHHHHHHcCCC-CcccHHHHHHHH
Q 042861 147 QLFTGLVLTKNMEFVDDLLTFEELGRHLKSQG--CHVANLSSLDFTAKSGIGGCLRSLLRQFLVAPL-DAADISILASWY 223 (457)
Q Consensus 147 ~IPTAllltGnin~~dh~~~F~~L~~~L~~~~--~~Vv~L~s~dc~~~~~i~~~Lk~ll~qli~~~~-~~yDl~~L~~Wy 223 (457)
..|+-+++.|... +.--.+-..+.+++++.. ..++-++...-. +...++..+++++..... ..-..+.+...+
T Consensus 40 ~~p~n~~iyG~~G-TGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~---t~~~i~~~i~~~~~~~p~~g~~~~~~~~~l~ 115 (366)
T COG1474 40 ERPSNIIIYGPTG-TGKTATVKFVMEELEESSANVEVVYINCLELR---TPYQVLSKILNKLGKVPLTGDSSLEILKRLY 115 (366)
T ss_pred CCCccEEEECCCC-CCHhHHHHHHHHHHHhhhccCceEEEeeeeCC---CHHHHHHHHHHHcCCCCCCCCchHHHHHHHH
Confidence 3455566667222 444556677888887652 225666655444 677778888887753222 233456666666
Q ss_pred HhhcCCCCCEEEEecCccccCch---hHHHHHHHHHHhhccC-CeEEEEeecCCChhHhhhccHHHHhhcccceeeeCCc
Q 042861 224 REQGNYNNPVVVIVDDIERCCGS---VLSDFILMFSEWVLKI-PVILIMGVTTTLDAPRNILLSNVLQCLCPCMFTLGTP 299 (457)
Q Consensus 224 ~~~~~~~~~lVvil~D~Esfd~~---VL~DlI~llSs~~~~I-P~vLVfGIATs~~~~~~~Lp~s~~slL~~~~F~~~s~ 299 (457)
+........+||++.+++..-.. +|=.|+ .|.... =-+.|+||+..... ..+|-..+-+.|......+++=
T Consensus 116 ~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~----r~~~~~~~~v~vi~i~n~~~~-~~~ld~rv~s~l~~~~I~F~pY 190 (366)
T COG1474 116 DNLSKKGKTVIVILDEVDALVDKDGEVLYSLL----RAPGENKVKVSIIAVSNDDKF-LDYLDPRVKSSLGPSEIVFPPY 190 (366)
T ss_pred HHHHhcCCeEEEEEcchhhhccccchHHHHHH----hhccccceeEEEEEEeccHHH-HHHhhhhhhhccCcceeeeCCC
Confidence 55555678999999999977665 444444 344433 23467777777655 8888889999999888444433
Q ss_pred c-hHHHHHHHHHHhcCCCceeeChhhHHHHHHHHHhccCCHHHHHHHHHHHH
Q 042861 300 S-ERMDAIIEAVLVRQCSGFSISHKVAVFMRNYFVRQDGTITSFIRALKIAC 350 (457)
Q Consensus 300 ~-~~l~~I~e~vll~~~~~f~Lg~~v~~~L~d~F~~~d~Sv~~fi~~LK~a~ 350 (457)
+ +-+..|+..=....-.+-.+++.++++....-.....+..-.|..|+-|.
T Consensus 191 ~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~aidilr~A~ 242 (366)
T COG1474 191 TAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESGDARKAIDILRRAG 242 (366)
T ss_pred CHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCccHHHHHHHHHHHH
Confidence 3 33333433333322334468889998888877777777777777777665
No 8
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=88.98 E-value=13 Score=35.93 Aligned_cols=164 Identities=16% Similarity=0.245 Sum_probs=97.8
Q ss_pred CchHHHHHHHHHHhhhc--CcEEEEeeCCCCCCCCChhHHHHHHHHHHHcCCCCcccHHHHHHHHHhhcCCCCCEEEEec
Q 042861 161 VDDLLTFEELGRHLKSQ--GCHVANLSSLDFTAKSGIGGCLRSLLRQFLVAPLDAADISILASWYREQGNYNNPVVVIVD 238 (457)
Q Consensus 161 ~dh~~~F~~L~~~L~~~--~~~Vv~L~s~dc~~~~~i~~~Lk~ll~qli~~~~~~yDl~~L~~Wy~~~~~~~~~lVvil~ 238 (457)
.+-..+.+.+...+.+. +..|+-+++.++. +.++..+-. ..++.+.+.|+.. =+++|+
T Consensus 45 ~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f~---------~~~~~~~~~-----~~~~~~~~~~~~~------DlL~iD 104 (219)
T PF00308_consen 45 LGKTHLLQAIANEAQKQHPGKRVVYLSAEEFI---------REFADALRD-----GEIEEFKDRLRSA------DLLIID 104 (219)
T ss_dssp SSHHHHHHHHHHHHHHHCTTS-EEEEEHHHHH---------HHHHHHHHT-----TSHHHHHHHHCTS------SEEEEE
T ss_pred CCHHHHHHHHHHHHHhccccccceeecHHHHH---------HHHHHHHHc-----ccchhhhhhhhcC------CEEEEe
Confidence 34456788888877653 4677777776542 222222222 2355555666433 289999
Q ss_pred CccccCchh--HHHHHHHHHHhhccCCeEEEEeecCCChhHhhhccHHHHhhcccceeeeCCcc-hHHHHHHHHHHhcCC
Q 042861 239 DIERCCGSV--LSDFILMFSEWVLKIPVILIMGVTTTLDAPRNILLSNVLQCLCPCMFTLGTPS-ERMDAIIEAVLVRQC 315 (457)
Q Consensus 239 D~Esfd~~V--L~DlI~llSs~~~~IP~vLVfGIATs~~~~~~~Lp~s~~slL~~~~F~~~s~~-~~l~~I~e~vll~~~ 315 (457)
|++.+...- -..|..++-....+=. .+|+.-..+++.+....|+=..++-.|-.+.+.++. +..-+|+++.....
T Consensus 105 Di~~l~~~~~~q~~lf~l~n~~~~~~k-~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~~r~~il~~~a~~~- 182 (219)
T PF00308_consen 105 DIQFLAGKQRTQEELFHLFNRLIESGK-QLILTSDRPPSELSGLLPDLRSRLSWGLVVELQPPDDEDRRRILQKKAKER- 182 (219)
T ss_dssp TGGGGTTHHHHHHHHHHHHHHHHHTTS-EEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE----HHHHHHHHHHHHHHT-
T ss_pred cchhhcCchHHHHHHHHHHHHHHhhCC-eEEEEeCCCCccccccChhhhhhHhhcchhhcCCCCHHHHHHHHHHHHHHh-
Confidence 999998764 5667777766665433 345554556666666666655556666678888887 55566666666655
Q ss_pred CceeeChhhHHHHHHHHHhccCCHHHHHHHHH
Q 042861 316 SGFSISHKVAVFMRNYFVRQDGTITSFIRALK 347 (457)
Q Consensus 316 ~~f~Lg~~v~~~L~d~F~~~d~Sv~~fi~~LK 347 (457)
.+.++..++.+|..++.+.--++.+.+..|.
T Consensus 183 -~~~l~~~v~~~l~~~~~~~~r~L~~~l~~l~ 213 (219)
T PF00308_consen 183 -GIELPEEVIEYLARRFRRDVRELEGALNRLD 213 (219)
T ss_dssp -T--S-HHHHHHHHHHTTSSHHHHHHHHHHHH
T ss_pred -CCCCcHHHHHHHHHhhcCCHHHHHHHHHHHH
Confidence 6779999999998887765555555555544
No 9
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=86.90 E-value=15 Score=36.80 Aligned_cols=45 Identities=18% Similarity=0.403 Sum_probs=40.7
Q ss_pred CCCCEEEEecCccccCchhHHHHHHHHHHhhccCCeEEEEeecCC
Q 042861 229 YNNPVVVIVDDIERCCGSVLSDFILMFSEWVLKIPVILIMGVTTT 273 (457)
Q Consensus 229 ~~~~lVvil~D~Esfd~~VL~DlI~llSs~~~~IP~vLVfGIATs 273 (457)
.+.++||+|+|++.|++.-.-+++..+....+--++++|+++-..
T Consensus 170 ~~~~iViiIDdLDR~~~~~i~~~l~~ik~~~~~~~i~~Il~~D~~ 214 (325)
T PF07693_consen 170 SKKRIVIIIDDLDRCSPEEIVELLEAIKLLLDFPNIIFILAFDPE 214 (325)
T ss_pred CCceEEEEEcchhcCCcHHHHHHHHHHHHhcCCCCeEEEEEecHH
Confidence 467999999999999999999999999999999899999997644
No 10
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=84.82 E-value=3.4 Score=37.32 Aligned_cols=118 Identities=20% Similarity=0.269 Sum_probs=47.9
Q ss_pred cceEEEecCCCCCCchHHHHHHHHHHhhhcCcEEEEeeCCCCCCC--CChhHHHHHHHHHHHcCCCC------------c
Q 042861 148 LFTGLVLTKNMEFVDDLLTFEELGRHLKSQGCHVANLSSLDFTAK--SGIGGCLRSLLRQFLVAPLD------------A 213 (457)
Q Consensus 148 IPTAllltGnin~~dh~~~F~~L~~~L~~~~~~Vv~L~s~dc~~~--~~i~~~Lk~ll~qli~~~~~------------~ 213 (457)
-|..+++.|.. =..-..+..++...+...++.++.+...+.... .+....++.++.++...... .
T Consensus 23 ~~~~~ll~G~~-G~GKT~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 101 (185)
T PF13191_consen 23 SPRNLLLTGES-GSGKTSLLRALLDRLAERGGYVISINCDDSERNPYSPFRSALRQLIDQLLDQSQATTRSPLREKLAAS 101 (185)
T ss_dssp ----EEE-B-T-TSSHHHHHHHHHHHHHHHT--EEEEEEETTTS-HHHHHHHHHHHHS----------------------
T ss_pred CCcEEEEECCC-CCCHHHHHHHHHHHHHhcCCEEEEEEEeccccchhhHHHHHHHHHHHHhhcccccccccccccccccc
Confidence 34677777722 245567778888888776555665555443100 01245555555554442210 0
Q ss_pred cc---------------------------H----HHHHHHHHhhcCCCCCEEEEecCccccCchhHHHHHHHHHHhhccC
Q 042861 214 AD---------------------------I----SILASWYREQGNYNNPVVVIVDDIERCCGSVLSDFILMFSEWVLKI 262 (457)
Q Consensus 214 yD---------------------------l----~~L~~Wy~~~~~~~~~lVvil~D~Esfd~~VL~DlI~llSs~~~~I 262 (457)
++ . ..+.+|.........|+||+|+|++..++.- .+++.-+.......
T Consensus 102 ~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~vlviDd~d~~~~~~-~~~l~~l~~~~~~~ 180 (185)
T PF13191_consen 102 LDDDAADLLVLLPDLDRLEAASALDPDSLEDRLEELLREILRELAARRKPLVLVIDDLDWADPAS-LDLLRALARRLQND 180 (185)
T ss_dssp --------------------SS---HHHHH----HHHHHHHTTS-SE---EEEEEETTTHHHTTH-HHHHHH--------
T ss_pred ccccccccccccccccccccccCCCHHHHHhHHHHHHHHHHHHHHhCCCeEEEEEeCCCCCCcHH-HHHHHhcccccccc
Confidence 00 1 3444454333333457999999999887655 55555555555555
Q ss_pred CeEEE
Q 042861 263 PVILI 267 (457)
Q Consensus 263 P~vLV 267 (457)
|+++|
T Consensus 181 ~~~vv 185 (185)
T PF13191_consen 181 PLLVV 185 (185)
T ss_dssp -----
T ss_pred cccCC
Confidence 77664
No 11
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=83.34 E-value=51 Score=37.63 Aligned_cols=176 Identities=14% Similarity=0.222 Sum_probs=109.8
Q ss_pred EEEecCCCCCCchHHHHHHHHHHhhh----cC-c--EEEEeeCCCCCCCCChhHHHHHHHHHHHcCCC-CcccHHHHHHH
Q 042861 151 GLVLTKNMEFVDDLLTFEELGRHLKS----QG-C--HVANLSSLDFTAKSGIGGCLRSLLRQFLVAPL-DAADISILASW 222 (457)
Q Consensus 151 AllltGnin~~dh~~~F~~L~~~L~~----~~-~--~Vv~L~s~dc~~~~~i~~~Lk~ll~qli~~~~-~~yDl~~L~~W 222 (457)
++-++| +-=+.--.+..++...|++ .. | -.+.++.-... +-..+-..|..++-+... -..-|++|...
T Consensus 424 ~mYIsG-vPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~---~~~~~Y~~I~~~lsg~~~~~~~al~~L~~~ 499 (767)
T KOG1514|consen 424 CMYISG-VPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLA---SPREIYEKIWEALSGERVTWDAALEALNFR 499 (767)
T ss_pred eEEEec-CCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceeec---CHHHHHHHHHHhcccCcccHHHHHHHHHHh
Confidence 445555 3222223455555555542 22 2 45566665543 222222333333332221 23458899988
Q ss_pred HHhhcCCCCCEEEEecCccccCc---hhHHHHHHHHHHhhc--cCCeEEEEeecCCChhHhhhccHHHHhhcccceeeeC
Q 042861 223 YREQGNYNNPVVVIVDDIERCCG---SVLSDFILMFSEWVL--KIPVILIMGVTTTLDAPRNILLSNVLQCLCPCMFTLG 297 (457)
Q Consensus 223 y~~~~~~~~~lVvil~D~Esfd~---~VL~DlI~llSs~~~--~IP~vLVfGIATs~~~~~~~Lp~s~~slL~~~~F~~~ 297 (457)
+..-..+.++.||.++..|..-+ .||.+|. .|-. .-+ .+|+|||-+.+.+++.|...+.++|-.....++
T Consensus 500 f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~f----dWpt~~~sK-Lvvi~IaNTmdlPEr~l~nrvsSRlg~tRi~F~ 574 (767)
T KOG1514|consen 500 FTVPKPKRSTTVVLIDELDILVTRSQDVLYNIF----DWPTLKNSK-LVVIAIANTMDLPERLLMNRVSSRLGLTRICFQ 574 (767)
T ss_pred hccCCCCCCCEEEEeccHHHHhcccHHHHHHHh----cCCcCCCCc-eEEEEecccccCHHHHhccchhhhccceeeecC
Confidence 87444467899999999997654 7888887 4542 222 378999999999999999999999999997777
Q ss_pred Ccc-hHHHHHHHHHHhcCCCceeeChhhHHHHHHHHHhccCC
Q 042861 298 TPS-ERMDAIIEAVLVRQCSGFSISHKVAVFMRNYFVRQDGT 338 (457)
Q Consensus 298 s~~-~~l~~I~e~vll~~~~~f~Lg~~v~~~L~d~F~~~d~S 338 (457)
+-. .-|.+|+..=+.+. +.+.+++.++...+--.-.++
T Consensus 575 pYth~qLq~Ii~~RL~~~---~~f~~~aielvarkVAavSGD 613 (767)
T KOG1514|consen 575 PYTHEQLQEIISARLKGL---DAFENKAIELVARKVAAVSGD 613 (767)
T ss_pred CCCHHHHHHHHHHhhcch---hhcchhHHHHHHHHHHhcccc
Confidence 655 56677776665555 456777777776555444443
No 12
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=82.81 E-value=26 Score=32.38 Aligned_cols=61 Identities=18% Similarity=0.248 Sum_probs=38.1
Q ss_pred CCCEEEEecCccccCchhHHHHHHHHHHhhccCCeEEEEeecCCChhHhhhccHHHHhhcccceeeeCCc
Q 042861 230 NNPVVVIVDDIERCCGSVLSDFILMFSEWVLKIPVILIMGVTTTLDAPRNILLSNVLQCLCPCMFTLGTP 299 (457)
Q Consensus 230 ~~~lVvil~D~Esfd~~VL~DlI~llSs~~~~IP~vLVfGIATs~~~~~~~Lp~s~~slL~~~~F~~~s~ 299 (457)
..+-||+|+|.|.++....+.|+..+...-+. .++|| +++.+ ..|.....++.. .+.+.+.
T Consensus 95 ~~~kviiide~~~l~~~~~~~Ll~~le~~~~~--~~~il-~~~~~----~~l~~~i~sr~~--~~~~~~~ 155 (188)
T TIGR00678 95 SGRRVVIIEDAERMNEAAANALLKTLEEPPPN--TLFIL-ITPSP----EKLLPTIRSRCQ--VLPFPPL 155 (188)
T ss_pred CCeEEEEEechhhhCHHHHHHHHHHhcCCCCC--eEEEE-EECCh----HhChHHHHhhcE--EeeCCCC
Confidence 35668999999999999888888777553333 23333 23333 456666666654 4555443
No 13
>PRK06620 hypothetical protein; Validated
Probab=81.11 E-value=14 Score=35.61 Aligned_cols=105 Identities=16% Similarity=0.201 Sum_probs=68.9
Q ss_pred EEEEecCccccCchhHHHHHHHHHHhhccCCeEEEEeecCCChhHhhhccHHHHhhcc-cceeeeCCcc-hHHHHHHHHH
Q 042861 233 VVVIVDDIERCCGSVLSDFILMFSEWVLKIPVILIMGVTTTLDAPRNILLSNVLQCLC-PCMFTLGTPS-ERMDAIIEAV 310 (457)
Q Consensus 233 lVvil~D~Esfd~~VL~DlI~llSs~~~~IP~vLVfGIATs~~~~~~~Lp~s~~slL~-~~~F~~~s~~-~~l~~I~e~v 310 (457)
-+++++|.+.+....|-.++..+.+-. -.+|++-.|.+..+. || ...++|. +-.+.+.++. +.+.+++++.
T Consensus 87 d~lliDdi~~~~~~~lf~l~N~~~e~g----~~ilits~~~p~~l~--l~-~L~SRl~~gl~~~l~~pd~~~~~~~l~k~ 159 (214)
T PRK06620 87 NAFIIEDIENWQEPALLHIFNIINEKQ----KYLLLTSSDKSRNFT--LP-DLSSRIKSVLSILLNSPDDELIKILIFKH 159 (214)
T ss_pred CEEEEeccccchHHHHHHHHHHHHhcC----CEEEEEcCCCccccc--hH-HHHHHHhCCceEeeCCCCHHHHHHHHHHH
Confidence 378899999775444444444333322 257777777777653 55 5666666 5578888877 5567777777
Q ss_pred HhcCCCceeeChhhHHHHHHHHHhccCCHHHHHHHH
Q 042861 311 LVRQCSGFSISHKVAVFMRNYFVRQDGTITSFIRAL 346 (457)
Q Consensus 311 ll~~~~~f~Lg~~v~~~L~d~F~~~d~Sv~~fi~~L 346 (457)
+... .+.++..++.||..++.+.--.+.+.+..|
T Consensus 160 ~~~~--~l~l~~ev~~~L~~~~~~d~r~l~~~l~~l 193 (214)
T PRK06620 160 FSIS--SVTISRQIIDFLLVNLPREYSKIIEILENI 193 (214)
T ss_pred HHHc--CCCCCHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 7654 688999999999887754444444444444
No 14
>PRK04195 replication factor C large subunit; Provisional
Probab=80.83 E-value=88 Score=33.83 Aligned_cols=184 Identities=13% Similarity=0.194 Sum_probs=106.0
Q ss_pred hhHHHHHHHHHHHhhhcccccccccchhhhccccCccccccccCccceEEEecCCCCCCchHHHHHHHHHHhhhcCcEEE
Q 042861 103 INANVFNEIHQWVRDSFSTIRSFGMLTFREATQAFPIVTDASSKQLFTGLVLTKNMEFVDDLLTFEELGRHLKSQGCHVA 182 (457)
Q Consensus 103 ~n~~v~~~I~~fI~~~~~~~~s~~~p~~~~a~~~~~~~~~~~~~~IPTAllltGnin~~dh~~~F~~L~~~L~~~~~~Vv 182 (457)
.|.++.+.|.+|+..... +..+.++++.|... ..--.+-..|...+ +..++
T Consensus 18 g~~~~~~~l~~~l~~~~~-------------------------g~~~~~lLL~GppG-~GKTtla~ala~el---~~~~i 68 (482)
T PRK04195 18 GNEKAKEQLREWIESWLK-------------------------GKPKKALLLYGPPG-VGKTSLAHALANDY---GWEVI 68 (482)
T ss_pred CCHHHHHHHHHHHHHHhc-------------------------CCCCCeEEEECCCC-CCHHHHHHHHHHHc---CCCEE
Confidence 467777888888876421 23466888888222 23233444444444 46678
Q ss_pred EeeCCCCCCCCChhHHHHHHHHHHHcCCCCcccHHHHHHHHHhhcCCCCCEEEEecCccccCc----hhHHHHHHHHHHh
Q 042861 183 NLSSLDFTAKSGIGGCLRSLLRQFLVAPLDAADISILASWYREQGNYNNPVVVIVDDIERCCG----SVLSDFILMFSEW 258 (457)
Q Consensus 183 ~L~s~dc~~~~~i~~~Lk~ll~qli~~~~~~yDl~~L~~Wy~~~~~~~~~lVvil~D~Esfd~----~VL~DlI~llSs~ 258 (457)
.+++.++. -...++.++....... .+ .+ ..+-||+|+|++.+.. +.+..|+.++.
T Consensus 69 elnasd~r----~~~~i~~~i~~~~~~~----sl----------~~-~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~-- 127 (482)
T PRK04195 69 ELNASDQR----TADVIERVAGEAATSG----SL----------FG-ARRKLILLDEVDGIHGNEDRGGARAILELIK-- 127 (482)
T ss_pred EEcccccc----cHHHHHHHHHHhhccC----cc----------cC-CCCeEEEEecCcccccccchhHHHHHHHHHH--
Confidence 88887764 2233444443322211 00 11 2467999999999876 56777777776
Q ss_pred hccCCeEEEEeecCCChhHhhhccHHHHhhcccceeeeCCcchHHHHHHHHHHhcCCCceeeChhhHHHHHHHHHhccCC
Q 042861 259 VLKIPVILIMGVTTTLDAPRNILLSNVLQCLCPCMFTLGTPSERMDAIIEAVLVRQCSGFSISHKVAVFMRNYFVRQDGT 338 (457)
Q Consensus 259 ~~~IP~vLVfGIATs~~~~~~~Lp~s~~slL~~~~F~~~s~~~~l~~I~e~vll~~~~~f~Lg~~v~~~L~d~F~~~d~S 338 (457)
....|++++.+ ... ...++...++...-.|.-.+. .-+..++..++... ++.+++.++..|.. ..+.+
T Consensus 128 ~~~~~iIli~n---~~~---~~~~k~Lrsr~~~I~f~~~~~-~~i~~~L~~i~~~e--gi~i~~eaL~~Ia~---~s~GD 195 (482)
T PRK04195 128 KAKQPIILTAN---DPY---DPSLRELRNACLMIEFKRLST-RSIVPVLKRICRKE--GIECDDEALKEIAE---RSGGD 195 (482)
T ss_pred cCCCCEEEecc---Ccc---ccchhhHhccceEEEecCCCH-HHHHHHHHHHHHHc--CCCCCHHHHHHHHH---HcCCC
Confidence 34677776543 221 112223333333333444443 34455666666554 56788998877755 45678
Q ss_pred HHHHHHHHHH
Q 042861 339 ITSFIRALKI 348 (457)
Q Consensus 339 v~~fi~~LK~ 348 (457)
+...+..|+.
T Consensus 196 lR~ain~Lq~ 205 (482)
T PRK04195 196 LRSAINDLQA 205 (482)
T ss_pred HHHHHHHHHH
Confidence 8888888876
No 15
>PRK06893 DNA replication initiation factor; Validated
Probab=80.82 E-value=14 Score=35.68 Aligned_cols=114 Identities=16% Similarity=0.168 Sum_probs=75.7
Q ss_pred EEEEecCccccCch--hHHHHHHHHHHhhccCCeEEEEeecCCChhHhhhccHHHHhhcccceeeeCCcc-hHHHHHHHH
Q 042861 233 VVVIVDDIERCCGS--VLSDFILMFSEWVLKIPVILIMGVTTTLDAPRNILLSNVLQCLCPCMFTLGTPS-ERMDAIIEA 309 (457)
Q Consensus 233 lVvil~D~Esfd~~--VL~DlI~llSs~~~~IP~vLVfGIATs~~~~~~~Lp~s~~slL~~~~F~~~s~~-~~l~~I~e~ 309 (457)
=+++|+|+...... --..|..++.....+=..++|++=.++++.+...+|.=..++-.+..|.+.... +...+|+++
T Consensus 93 dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~ 172 (229)
T PRK06893 93 DLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQR 172 (229)
T ss_pred CEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHHH
Confidence 48999999987532 122455555444432223466776777777776666544444446667777666 666677777
Q ss_pred HHhcCCCceeeChhhHHHHHHHHHhccCCHHHHHHHHHH
Q 042861 310 VLVRQCSGFSISHKVAVFMRNYFVRQDGTITSFIRALKI 348 (457)
Q Consensus 310 vll~~~~~f~Lg~~v~~~L~d~F~~~d~Sv~~fi~~LK~ 348 (457)
..... .+.++..++.||..++.+.--++.+.+..|..
T Consensus 173 ~a~~~--~l~l~~~v~~~L~~~~~~d~r~l~~~l~~l~~ 209 (229)
T PRK06893 173 NAYQR--GIELSDEVANFLLKRLDRDMHTLFDALDLLDK 209 (229)
T ss_pred HHHHc--CCCCCHHHHHHHHHhccCCHHHHHHHHHHHHH
Confidence 66655 58999999999988887666667676666643
No 16
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=80.35 E-value=4 Score=34.62 Aligned_cols=96 Identities=10% Similarity=0.231 Sum_probs=57.8
Q ss_pred chHHHHHHHHHHhhhcCcEEEEeeCCCCCCCCChhHHHHHHHHHHHcCCCCcccHHHHHHHHHhhcCCCCCEEEEecCcc
Q 042861 162 DDLLTFEELGRHLKSQGCHVANLSSLDFTAKSGIGGCLRSLLRQFLVAPLDAADISILASWYREQGNYNNPVVVIVDDIE 241 (457)
Q Consensus 162 dh~~~F~~L~~~L~~~~~~Vv~L~s~dc~~~~~i~~~Lk~ll~qli~~~~~~yDl~~L~~Wy~~~~~~~~~lVvil~D~E 241 (457)
+-..+.+.+.+.+. .+++.++..+... . ........+..++........|.||+|+|+|
T Consensus 10 GKT~l~~~la~~l~---~~~~~i~~~~~~~--~----------------~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~d 68 (132)
T PF00004_consen 10 GKTTLARALAQYLG---FPFIEIDGSELIS--S----------------YAGDSEQKIRDFFKKAKKSAKPCVLFIDEID 68 (132)
T ss_dssp SHHHHHHHHHHHTT---SEEEEEETTHHHT--S----------------STTHHHHHHHHHHHHHHHTSTSEEEEEETGG
T ss_pred CeeHHHHHHHhhcc---ccccccccccccc--c----------------cccccccccccccccccccccceeeeeccch
Confidence 44455566666653 5666666654421 0 1122233444444443221248999999999
Q ss_pred ccCchh-----------HHHHHHHHHHhhccCCeEEEEeecCCChhHh
Q 042861 242 RCCGSV-----------LSDFILMFSEWVLKIPVILIMGVTTTLDAPR 278 (457)
Q Consensus 242 sfd~~V-----------L~DlI~llSs~~~~IP~vLVfGIATs~~~~~ 278 (457)
.+.+.. ++.|...+..+...-+=++|+|.+..++.+.
T Consensus 69 ~l~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~~~~i~ 116 (132)
T PF00004_consen 69 KLFPKSQPSSSSFEQRLLNQLLSLLDNPSSKNSRVIVIATTNSPDKID 116 (132)
T ss_dssp GTSHHCSTSSSHHHHHHHHHHHHHHHTTTTTSSSEEEEEEESSGGGSC
T ss_pred hcccccccccccccccccceeeecccccccccccceeEEeeCChhhCC
Confidence 999887 8888888888877644455566666655433
No 17
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=80.21 E-value=5.5 Score=34.00 Aligned_cols=106 Identities=11% Similarity=0.116 Sum_probs=57.7
Q ss_pred EEEecCCCCCCchHHHHHHHHHHhhhc-----CcEEEEeeCCCCCCCCChhHHHHHHHHHHHcCCCCccc----HHHHHH
Q 042861 151 GLVLTKNMEFVDDLLTFEELGRHLKSQ-----GCHVANLSSLDFTAKSGIGGCLRSLLRQFLVAPLDAAD----ISILAS 221 (457)
Q Consensus 151 AllltGnin~~dh~~~F~~L~~~L~~~-----~~~Vv~L~s~dc~~~~~i~~~Lk~ll~qli~~~~~~yD----l~~L~~ 221 (457)
.+++.| -.=..-..+.+++...+... .+.++.+...... +.+...+.++.++-.......+ ++.+..
T Consensus 6 ~~~i~G-~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~ 81 (131)
T PF13401_consen 6 ILVISG-PPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSR---TPRDFAQEILEALGLPLKSRQTSDELRSLLID 81 (131)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHS---SHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHH
T ss_pred ccEEEc-CCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCC---CHHHHHHHHHHHhCccccccCCHHHHHHHHHH
Confidence 445555 12234456667777766432 4555544444332 4666777777777665544223 344444
Q ss_pred HHHhhcCCCCCEEEEecCcccc-CchhHHHHHHHHHHhhccCCeEEEE
Q 042861 222 WYREQGNYNNPVVVIVDDIERC-CGSVLSDFILMFSEWVLKIPVILIM 268 (457)
Q Consensus 222 Wy~~~~~~~~~lVvil~D~Esf-d~~VL~DlI~llSs~~~~IP~vLVf 268 (457)
+.... ...+|+|+|++.+ +..++..+. +..++-.+.+|+
T Consensus 82 ~l~~~----~~~~lviDe~~~l~~~~~l~~l~----~l~~~~~~~vvl 121 (131)
T PF13401_consen 82 ALDRR----RVVLLVIDEADHLFSDEFLEFLR----SLLNESNIKVVL 121 (131)
T ss_dssp HHHHC----TEEEEEEETTHHHHTHHHHHHHH----HHTCSCBEEEEE
T ss_pred HHHhc----CCeEEEEeChHhcCCHHHHHHHH----HHHhCCCCeEEE
Confidence 44433 3489999999999 755555554 444444444443
No 18
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=80.16 E-value=78 Score=36.15 Aligned_cols=184 Identities=12% Similarity=0.147 Sum_probs=94.2
Q ss_pred CccceEEEecCCCCCCchHHHHHHHHHHhhhcCc-EEEEeeCCCCCCCCChhHHHHHHHH----HHHcCC----CCcccH
Q 042861 146 KQLFTGLVLTKNMEFVDDLLTFEELGRHLKSQGC-HVANLSSLDFTAKSGIGGCLRSLLR----QFLVAP----LDAADI 216 (457)
Q Consensus 146 ~~IPTAllltGnin~~dh~~~F~~L~~~L~~~~~-~Vv~L~s~dc~~~~~i~~~Lk~ll~----qli~~~----~~~yDl 216 (457)
++||-++|++|.-. ..--.+-..|...|.-.++ .--.+.+.-|. ....| +.+-. .+++.. ....|+
T Consensus 35 gRLpHA~LFtGP~G-vGKTTLAriLAkaLnC~~p~~~~g~~~~PCG---~C~sC-~~I~aG~hpDviEIdAas~~gVDdI 109 (700)
T PRK12323 35 QRLHHAYLFTGTRG-VGKTTLSRILAKSLNCTGADGEGGITAQPCG---QCRAC-TEIDAGRFVDYIEMDAASNRGVDEM 109 (700)
T ss_pred CCCceEEEEECCCC-CCHHHHHHHHHHHhcCCCccccccCCCCCCc---ccHHH-HHHHcCCCCcceEecccccCCHHHH
Confidence 57889999998222 3434455667766642110 01112334453 11122 11111 111110 112345
Q ss_pred HHHHHHHHhhcCCCCCEEEEecCccccCchhHHHHHHHHHHhhccCCeEEEEeecCCChhHhhhccHHHHhhcccceeee
Q 042861 217 SILASWYREQGNYNNPVVVIVDDIERCCGSVLSDFILMFSEWVLKIPVILIMGVTTTLDAPRNILLSNVLQCLCPCMFTL 296 (457)
Q Consensus 217 ~~L~~Wy~~~~~~~~~lVvil~D~Esfd~~VL~DlI~llSs~~~~IP~vLVfGIATs~~~~~~~Lp~s~~slL~~~~F~~ 296 (457)
..|..+........+.-|+||++.+.++....+-|+..|-+.-.++.|+|+ +|.+ ..|+...+|+...-.|.-
T Consensus 110 ReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILa---Ttep----~kLlpTIrSRCq~f~f~~ 182 (700)
T PRK12323 110 AQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILA---TTDP----QKIPVTVLSRCLQFNLKQ 182 (700)
T ss_pred HHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEE---eCCh----HhhhhHHHHHHHhcccCC
Confidence 545444332222234569999999999999999999988876666655543 4443 355566777766555655
Q ss_pred CCcchHHHHHHHHHHhcCCCceeeChhhHHHHHHHHHhccCCHHHHHHHHH
Q 042861 297 GTPSERMDAIIEAVLVRQCSGFSISHKVAVFMRNYFVRQDGTITSFIRALK 347 (457)
Q Consensus 297 ~s~~~~l~~I~e~vll~~~~~f~Lg~~v~~~L~d~F~~~d~Sv~~fi~~LK 347 (457)
.+..++.+. +.+++... ...+....++.| ....+.|+..-++-+.
T Consensus 183 ls~eei~~~-L~~Il~~E--gi~~d~eAL~~I---A~~A~Gs~RdALsLLd 227 (700)
T PRK12323 183 MPPGHIVSH-LDAILGEE--GIAHEVNALRLL---AQAAQGSMRDALSLTD 227 (700)
T ss_pred CChHHHHHH-HHHHHHHc--CCCCCHHHHHHH---HHHcCCCHHHHHHHHH
Confidence 554444333 33333333 334455544433 2334555554444443
No 19
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=78.41 E-value=34 Score=35.11 Aligned_cols=125 Identities=18% Similarity=0.225 Sum_probs=74.1
Q ss_pred CccceEEEecCCCCCCchHHHHHHHHHHhhhc--CcEEEEeeCCCCC----CCCChhHHH--HHHHHHHHcCCCCc----
Q 042861 146 KQLFTGLVLTKNMEFVDDLLTFEELGRHLKSQ--GCHVANLSSLDFT----AKSGIGGCL--RSLLRQFLVAPLDA---- 213 (457)
Q Consensus 146 ~~IPTAllltGnin~~dh~~~F~~L~~~L~~~--~~~Vv~L~s~dc~----~~~~i~~~L--k~ll~qli~~~~~~---- 213 (457)
.+=|.++|+.| ..-+..-...++|..+|... .|+|++|.|.--. ++-.|+..+ |.+++|.--.....
T Consensus 16 ~~~p~~ilVvG-MAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPNGgI~Ts 94 (366)
T KOG1532|consen 16 IQRPVIILVVG-MAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPNGGIVTS 94 (366)
T ss_pred ccCCcEEEEEe-cCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCCcchhhh
Confidence 45688888888 33234344449999999765 3799999984221 222333333 56666653222110
Q ss_pred -----ccHHHHHHHHHhhc-------------------------------CCCCCEEEEecCcc--ccCchhHHHHHHHH
Q 042861 214 -----ADISILASWYREQG-------------------------------NYNNPVVVIVDDIE--RCCGSVLSDFILMF 255 (457)
Q Consensus 214 -----yDl~~L~~Wy~~~~-------------------------------~~~~~lVvil~D~E--sfd~~VL~DlI~ll 255 (457)
--++.+........ ..-+-+|+-+=|+. +.+..-.+..+..|
T Consensus 95 LNLF~tk~dqv~~~iek~~~~~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMSNMlYAc 174 (366)
T KOG1532|consen 95 LNLFATKFDQVIELIEKRAEEFDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMSNMLYAC 174 (366)
T ss_pred HHHHHHHHHHHHHHHHHhhcccCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHHHHHHHH
Confidence 01111111111100 12356777788887 45667788999999
Q ss_pred H-HhhccCCeEEEEeec
Q 042861 256 S-EWVLKIPVILIMGVT 271 (457)
Q Consensus 256 S-s~~~~IP~vLVfGIA 271 (457)
| -|..++||+++|+=.
T Consensus 175 Silyktklp~ivvfNK~ 191 (366)
T KOG1532|consen 175 SILYKTKLPFIVVFNKT 191 (366)
T ss_pred HHHHhccCCeEEEEecc
Confidence 8 578999999999844
No 20
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=77.99 E-value=95 Score=33.18 Aligned_cols=170 Identities=13% Similarity=0.204 Sum_probs=99.8
Q ss_pred EEEecCCCCCCchHHHHHHHHHHhhhc--CcEEEEeeCCCCCCCCChhHHHHHHHHHHHcCCCCcccHHHHHHHHHhhcC
Q 042861 151 GLVLTKNMEFVDDLLTFEELGRHLKSQ--GCHVANLSSLDFTAKSGIGGCLRSLLRQFLVAPLDAADISILASWYREQGN 228 (457)
Q Consensus 151 AllltGnin~~dh~~~F~~L~~~L~~~--~~~Vv~L~s~dc~~~~~i~~~Lk~ll~qli~~~~~~yDl~~L~~Wy~~~~~ 228 (457)
.+++.|... .+--.+...+...+... +..|+-+++.++ +..++..+-. ..++.+...|..
T Consensus 150 ~l~l~G~~G-~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~---------~~~~~~~~~~-----~~~~~~~~~~~~--- 211 (450)
T PRK00149 150 PLFIYGGVG-LGKTHLLHAIGNYILEKNPNAKVVYVTSEKF---------TNDFVNALRN-----NTMEEFKEKYRS--- 211 (450)
T ss_pred eEEEECCCC-CCHHHHHHHHHHHHHHhCCCCeEEEEEHHHH---------HHHHHHHHHc-----CcHHHHHHHHhc---
Confidence 466666332 34445667888877654 456666666433 2223333211 123444444432
Q ss_pred CCCCEEEEecCccccCch--hHHHHHHHHHHhhc-cCCeEEEEeecCCChhHhhhccHHHHhhcc-cceeeeCCcc-hHH
Q 042861 229 YNNPVVVIVDDIERCCGS--VLSDFILMFSEWVL-KIPVILIMGVTTTLDAPRNILLSNVLQCLC-PCMFTLGTPS-ERM 303 (457)
Q Consensus 229 ~~~~lVvil~D~Esfd~~--VL~DlI~llSs~~~-~IP~vLVfGIATs~~~~~~~Lp~s~~slL~-~~~F~~~s~~-~~l 303 (457)
.-|++|+|++.+... ..++|..++..... .-+ +|++-..+++.+...-+ ...++|. +-.+.+..+. +..
T Consensus 212 ---~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~--iiits~~~p~~l~~l~~-~l~SRl~~gl~v~i~~pd~~~r 285 (450)
T PRK00149 212 ---VDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQ--IVLTSDRPPKELPGLEE-RLRSRFEWGLTVDIEPPDLETR 285 (450)
T ss_pred ---CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCc--EEEECCCCHHHHHHHHH-HHHhHhcCCeeEEecCCCHHHH
Confidence 348999999988653 56778887765543 334 45555556666665444 4566664 4567776665 666
Q ss_pred HHHHHHHHhcCCCceeeChhhHHHHHHHHHhccCCHHHHHHHH
Q 042861 304 DAIIEAVLVRQCSGFSISHKVAVFMRNYFVRQDGTITSFIRAL 346 (457)
Q Consensus 304 ~~I~e~vll~~~~~f~Lg~~v~~~L~d~F~~~d~Sv~~fi~~L 346 (457)
-+|+++..... ++.+.+.++.+|.+++...--.+.+.+..|
T Consensus 286 ~~il~~~~~~~--~~~l~~e~l~~ia~~~~~~~R~l~~~l~~l 326 (450)
T PRK00149 286 IAILKKKAEEE--GIDLPDEVLEFIAKNITSNVRELEGALNRL 326 (450)
T ss_pred HHHHHHHHHHc--CCCCCHHHHHHHHcCcCCCHHHHHHHHHHH
Confidence 67777766653 678999999988776644333344444444
No 21
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=77.61 E-value=1.4e+02 Score=34.31 Aligned_cols=108 Identities=16% Similarity=0.151 Sum_probs=69.4
Q ss_pred CCEEEEecCccccCchhHHHHHHHHHHhhccCCeEEEEeecCCChhHhhhccHHHHhhcccceeeeCCcchHHHHHHHHH
Q 042861 231 NPVVVIVDDIERCCGSVLSDFILMFSEWVLKIPVILIMGVTTTLDAPRNILLSNVLQCLCPCMFTLGTPSERMDAIIEAV 310 (457)
Q Consensus 231 ~~lVvil~D~Esfd~~VL~DlI~llSs~~~~IP~vLVfGIATs~~~~~~~Lp~s~~slL~~~~F~~~s~~~~l~~I~e~v 310 (457)
+.-||||++.+.++....+.|+..|-..-..+.|+|+ +|.+. .++...+++...-.|.-.+. +-+...++.+
T Consensus 119 k~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~fILa---Ttd~~----kL~~TIrSRC~~f~f~~Ls~-eeI~~~L~~I 190 (709)
T PRK08691 119 KYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILA---TTDPH----KVPVTVLSRCLQFVLRNMTA-QQVADHLAHV 190 (709)
T ss_pred CcEEEEEECccccCHHHHHHHHHHHHhCCCCcEEEEE---eCCcc----ccchHHHHHHhhhhcCCCCH-HHHHHHHHHH
Confidence 3568999999999999999999888876666655543 23322 45555555553323333333 3344455555
Q ss_pred HhcCCCceeeChhhHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 042861 311 LVRQCSGFSISHKVAVFMRNYFVRQDGTITSFIRALKIACS 351 (457)
Q Consensus 311 ll~~~~~f~Lg~~v~~~L~d~F~~~d~Sv~~fi~~LK~a~M 351 (457)
+... ...+.+..+..|. ...+.|+...++.|+-++.
T Consensus 191 l~kE--gi~id~eAL~~Ia---~~A~GslRdAlnLLDqaia 226 (709)
T PRK08691 191 LDSE--KIAYEPPALQLLG---RAAAGSMRDALSLLDQAIA 226 (709)
T ss_pred HHHc--CCCcCHHHHHHHH---HHhCCCHHHHHHHHHHHHH
Confidence 5555 4677888776664 4457888888888865543
No 22
>PRK08084 DNA replication initiation factor; Provisional
Probab=77.02 E-value=23 Score=34.46 Aligned_cols=112 Identities=15% Similarity=0.110 Sum_probs=69.6
Q ss_pred EEEecCccccCch--hHHHHHHHHHHhhccCCeEEEEeecCCChhHhhhccHHHHhhcccceeeeCCcc-hHHHHHHHHH
Q 042861 234 VVIVDDIERCCGS--VLSDFILMFSEWVLKIPVILIMGVTTTLDAPRNILLSNVLQCLCPCMFTLGTPS-ERMDAIIEAV 310 (457)
Q Consensus 234 Vvil~D~Esfd~~--VL~DlI~llSs~~~~IP~vLVfGIATs~~~~~~~Lp~s~~slL~~~~F~~~s~~-~~l~~I~e~v 310 (457)
+|+|+|+..+... -=..|..++......=...+|+.=..++..+...+|.=..++-.+-.+.+.+.. +-+-+++++.
T Consensus 100 lliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~SRl~~g~~~~l~~~~~~~~~~~l~~~ 179 (235)
T PRK08084 100 LVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEEKLQALQLR 179 (235)
T ss_pred EEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHHHHhCCceeeecCCCHHHHHHHHHHH
Confidence 7889999988643 222333444443321111234432344555555677777777778889998874 5666777775
Q ss_pred HhcCCCceeeChhhHHHHHHHHHhccCCHHHHHHHHH
Q 042861 311 LVRQCSGFSISHKVAVFMRNYFVRQDGTITSFIRALK 347 (457)
Q Consensus 311 ll~~~~~f~Lg~~v~~~L~d~F~~~d~Sv~~fi~~LK 347 (457)
.... .+.+++.++.||..++.+.--.+.+.+..|.
T Consensus 180 a~~~--~~~l~~~v~~~L~~~~~~d~r~l~~~l~~l~ 214 (235)
T PRK08084 180 ARLR--GFELPEDVGRFLLKRLDREMRTLFMTLDQLD 214 (235)
T ss_pred HHHc--CCCCCHHHHHHHHHhhcCCHHHHHHHHHHHH
Confidence 5554 5899999999997776654444555555443
No 23
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=76.50 E-value=1e+02 Score=32.27 Aligned_cols=170 Identities=13% Similarity=0.209 Sum_probs=98.0
Q ss_pred EEEecCCCCCCchHHHHHHHHHHhhhc--CcEEEEeeCCCCCCCCChhHHHHHHHHHHHcCCCCcccHHHHHHHHHhhcC
Q 042861 151 GLVLTKNMEFVDDLLTFEELGRHLKSQ--GCHVANLSSLDFTAKSGIGGCLRSLLRQFLVAPLDAADISILASWYREQGN 228 (457)
Q Consensus 151 AllltGnin~~dh~~~F~~L~~~L~~~--~~~Vv~L~s~dc~~~~~i~~~Lk~ll~qli~~~~~~yDl~~L~~Wy~~~~~ 228 (457)
.+++.|... ++--.+...+...+... +..|+-+++.+. +..++..+... .++.+...|..
T Consensus 138 ~l~l~G~~G-~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~---------~~~~~~~~~~~-----~~~~~~~~~~~--- 199 (405)
T TIGR00362 138 PLFIYGGVG-LGKTHLLHAIGNEILENNPNAKVVYVSSEKF---------TNDFVNALRNN-----KMEEFKEKYRS--- 199 (405)
T ss_pred eEEEECCCC-CcHHHHHHHHHHHHHHhCCCCcEEEEEHHHH---------HHHHHHHHHcC-----CHHHHHHHHHh---
Confidence 566666333 34455667888877654 456666665432 22333333221 34555555543
Q ss_pred CCCCEEEEecCccccCch--hHHHHHHHHHHhh-ccCCeEEEEeecCCChhHhhhccHHHHhhcc-cceeeeCCcc-hHH
Q 042861 229 YNNPVVVIVDDIERCCGS--VLSDFILMFSEWV-LKIPVILIMGVTTTLDAPRNILLSNVLQCLC-PCMFTLGTPS-ERM 303 (457)
Q Consensus 229 ~~~~lVvil~D~Esfd~~--VL~DlI~llSs~~-~~IP~vLVfGIATs~~~~~~~Lp~s~~slL~-~~~F~~~s~~-~~l 303 (457)
.=|++|+|++..... .-..|..++.... ..-+ +|++-..+++.+....+ ...++|. +-...++.+. +..
T Consensus 200 ---~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~--iiits~~~p~~l~~l~~-~l~SRl~~g~~v~i~~pd~~~r 273 (405)
T TIGR00362 200 ---VDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQ--IVLTSDRPPKELPGLEE-RLRSRFEWGLVVDIEPPDLETR 273 (405)
T ss_pred ---CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCC--EEEecCCCHHHHhhhhh-hhhhhccCCeEEEeCCCCHHHH
Confidence 238899999987653 4455777765433 3344 45555555666666444 4555554 4456666655 555
Q ss_pred HHHHHHHHhcCCCceeeChhhHHHHHHHHHhccCCHHHHHHHH
Q 042861 304 DAIIEAVLVRQCSGFSISHKVAVFMRNYFVRQDGTITSFIRAL 346 (457)
Q Consensus 304 ~~I~e~vll~~~~~f~Lg~~v~~~L~d~F~~~d~Sv~~fi~~L 346 (457)
-.|+++.+... .+.++..++.+|..++...--.+.+.+..|
T Consensus 274 ~~il~~~~~~~--~~~l~~e~l~~ia~~~~~~~r~l~~~l~~l 314 (405)
T TIGR00362 274 LAILQKKAEEE--GLELPDEVLEFIAKNIRSNVRELEGALNRL 314 (405)
T ss_pred HHHHHHHHHHc--CCCCCHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 66667666654 678999999999876654333344444444
No 24
>PF14516 AAA_35: AAA-like domain
Probab=76.47 E-value=36 Score=34.94 Aligned_cols=100 Identities=18% Similarity=0.263 Sum_probs=56.8
Q ss_pred CchHHHHHHHHHHhhhcCc--EEEEeeCCCCCCCCChhHHHHHHHHHHHcCCCCcc-----------cHHHHHHHHHhh-
Q 042861 161 VDDLLTFEELGRHLKSQGC--HVANLSSLDFTAKSGIGGCLRSLLRQFLVAPLDAA-----------DISILASWYREQ- 226 (457)
Q Consensus 161 ~dh~~~F~~L~~~L~~~~~--~Vv~L~s~dc~~~~~i~~~Lk~ll~qli~~~~~~y-----------Dl~~L~~Wy~~~- 226 (457)
.+-.++..++.+++++.+. ..+.++.-+-....+....++.+...+.+.-.-.. ....+..|..+.
T Consensus 42 ~GKTSll~~l~~~l~~~~~~~v~id~~~~~~~~~~~~~~f~~~~~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~l 121 (331)
T PF14516_consen 42 MGKTSLLLRLLERLQQQGYRCVYIDLQQLGSAIFSDLEQFLRWFCEEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYL 121 (331)
T ss_pred CCHHHHHHHHHHHHHHCCCEEEEEEeecCCCcccCCHHHHHHHHHHHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHH
Confidence 4455778888888877664 44444443221112344455555555544321110 011111121111
Q ss_pred -cCCCCCEEEEecCccccC--chhHHHHHHHHHHhhc
Q 042861 227 -GNYNNPVVVIVDDIERCC--GSVLSDFILMFSEWVL 260 (457)
Q Consensus 227 -~~~~~~lVvil~D~Esfd--~~VL~DlI~llSs~~~ 260 (457)
...++|||++|+++|+.- +.+..||+.+|.+|..
T Consensus 122 l~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~ 158 (331)
T PF14516_consen 122 LKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYE 158 (331)
T ss_pred HhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHH
Confidence 123689999999999544 5788999999999985
No 25
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=76.01 E-value=93 Score=35.13 Aligned_cols=122 Identities=15% Similarity=0.139 Sum_probs=77.3
Q ss_pred HHHHHHHHHhhcCCCCCEEEEecCccccCch--hHHHHHHHHHHhhc-cCCeEEEEeecCCChhHhhhccHHHHhhcccc
Q 042861 216 ISILASWYREQGNYNNPVVVIVDDIERCCGS--VLSDFILMFSEWVL-KIPVILIMGVTTTLDAPRNILLSNVLQCLCPC 292 (457)
Q Consensus 216 l~~L~~Wy~~~~~~~~~lVvil~D~Esfd~~--VL~DlI~llSs~~~-~IP~vLVfGIATs~~~~~~~Lp~s~~slL~~~ 292 (457)
++.+..+|... =|++|+|++.+... --.+|..++..... .-++++ .-..++..+...+++=..++-.+-
T Consensus 368 ~~~f~~~y~~~------DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~III--TSd~~P~eL~~l~~rL~SRf~~GL 439 (617)
T PRK14086 368 GDSFRRRYREM------DILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVL--SSDRPPKQLVTLEDRLRNRFEWGL 439 (617)
T ss_pred HHHHHHHhhcC------CEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEE--ecCCChHhhhhccHHHHhhhhcCc
Confidence 44555666432 37889999987553 23567777765554 345443 222333444444444444455566
Q ss_pred eeeeCCcc-hHHHHHHHHHHhcCCCceeeChhhHHHHHHHHHhccCCHHHHHHHHH
Q 042861 293 MFTLGTPS-ERMDAIIEAVLVRQCSGFSISHKVAVFMRNYFVRQDGTITSFIRALK 347 (457)
Q Consensus 293 ~F~~~s~~-~~l~~I~e~vll~~~~~f~Lg~~v~~~L~d~F~~~d~Sv~~fi~~LK 347 (457)
.+++..+. +..-+|+++..... .+.++..++.||..++.+.--.+...+..|.
T Consensus 440 vv~I~~PD~EtR~aIL~kka~~r--~l~l~~eVi~yLa~r~~rnvR~LegaL~rL~ 493 (617)
T PRK14086 440 ITDVQPPELETRIAILRKKAVQE--QLNAPPEVLEFIASRISRNIRELEGALIRVT 493 (617)
T ss_pred eEEcCCCCHHHHHHHHHHHHHhc--CCCCCHHHHHHHHHhccCCHHHHHHHHHHHH
Confidence 68888777 66677777766554 6899999999999988776566666666553
No 26
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=75.91 E-value=65 Score=33.96 Aligned_cols=139 Identities=17% Similarity=0.220 Sum_probs=85.0
Q ss_pred HHHHHhhhcC--cEEEEeeCCCCCCCCChhHHHHHHHHHHHcCCCC--------cccHHHHHHHHHh-hcCCCCCEEEEe
Q 042861 169 ELGRHLKSQG--CHVANLSSLDFTAKSGIGGCLRSLLRQFLVAPLD--------AADISILASWYRE-QGNYNNPVVVIV 237 (457)
Q Consensus 169 ~L~~~L~~~~--~~Vv~L~s~dc~~~~~i~~~Lk~ll~qli~~~~~--------~yDl~~L~~Wy~~-~~~~~~~lVvil 237 (457)
.|.+ .++.+ ..+|+|+..-- ..+.+++.+.+|+-..... ...++-|-.-.++ .....-+||+|+
T Consensus 69 ~Ls~-~q~~~E~~l~v~Lng~~~----~dk~al~~I~rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIl 143 (408)
T KOG2228|consen 69 RLSD-IQENGENFLLVRLNGELQ----TDKIALKGITRQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFIL 143 (408)
T ss_pred HHhh-HHhcCCeEEEEEECccch----hhHHHHHHHHHHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEe
Confidence 3444 44443 58899988432 3566999999988653210 1223333332222 223456899999
Q ss_pred cCccccCchhHHHHHHHHHHhh--ccCCeEEEEeecCCChhHhhhccHHHHhhcccce-eeeCCcc-hHHHHHHHHHHhc
Q 042861 238 DDIERCCGSVLSDFILMFSEWV--LKIPVILIMGVTTTLDAPRNILLSNVLQCLCPCM-FTLGTPS-ERMDAIIEAVLVR 313 (457)
Q Consensus 238 ~D~Esfd~~VL~DlI~llSs~~--~~IP~vLVfGIATs~~~~~~~Lp~s~~slL~~~~-F~~~s~~-~~l~~I~e~vll~ 313 (457)
+.|+.|-+..=|-++.=|=.-. .+-|+ .|+|++|..+.++ +|-+.|-++..-++ |-.++.. .-...++.+++-=
T Consensus 144 dEfDlf~~h~rQtllYnlfDisqs~r~Pi-ciig~Ttrld~lE-~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll~v 221 (408)
T KOG2228|consen 144 DEFDLFAPHSRQTLLYNLFDISQSARAPI-CIIGVTTRLDILE-LLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLLSV 221 (408)
T ss_pred ehhhccccchhhHHHHHHHHHHhhcCCCe-EEEEeeccccHHH-HHHHHHHhhcccceeeccCCCChHHHHHHHHHHhcC
Confidence 9999999988776665432222 47886 6789999998765 66677777776664 4433333 3344566776643
Q ss_pred C
Q 042861 314 Q 314 (457)
Q Consensus 314 ~ 314 (457)
|
T Consensus 222 ~ 222 (408)
T KOG2228|consen 222 P 222 (408)
T ss_pred C
Confidence 3
No 27
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=74.86 E-value=1.7e+02 Score=34.06 Aligned_cols=107 Identities=12% Similarity=0.125 Sum_probs=69.6
Q ss_pred CCEEEEecCccccCchhHHHHHHHHHHhhccCCeEEEEeecCCChhHhhhccHHHHhhcccceeeeCCcchHHHHHHHHH
Q 042861 231 NPVVVIVDDIERCCGSVLSDFILMFSEWVLKIPVILIMGVTTTLDAPRNILLSNVLQCLCPCMFTLGTPSERMDAIIEAV 310 (457)
Q Consensus 231 ~~lVvil~D~Esfd~~VL~DlI~llSs~~~~IP~vLVfGIATs~~~~~~~Lp~s~~slL~~~~F~~~s~~~~l~~I~e~v 310 (457)
+.-|+||++.+.++..-.+-|+.+|-+.-.++.|+|+ +|.. ..++...+++...-.|.-.+..+ +...++.+
T Consensus 119 r~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILa---Ttd~----~KIp~TIrSRCq~f~Fk~Ls~ee-Iv~~L~~I 190 (830)
T PRK07003 119 RFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILA---TTDP----QKIPVTVLSRCLQFNLKQMPAGH-IVSHLERI 190 (830)
T ss_pred CceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEE---ECCh----hhccchhhhheEEEecCCcCHHH-HHHHHHHH
Confidence 3458899999999999999999988887665555543 3332 34566677776544444444333 33444555
Q ss_pred HhcCCCceeeChhhHHHHHHHHHhccCCHHHHHHHHHHHH
Q 042861 311 LVRQCSGFSISHKVAVFMRNYFVRQDGTITSFIRALKIAC 350 (457)
Q Consensus 311 ll~~~~~f~Lg~~v~~~L~d~F~~~d~Sv~~fi~~LK~a~ 350 (457)
+... .+.+....+..| -...+.|+...++-++-++
T Consensus 191 l~~E--gI~id~eAL~lI---A~~A~GsmRdALsLLdQAi 225 (830)
T PRK07003 191 LGEE--RIAFEPQALRLL---ARAAQGSMRDALSLTDQAI 225 (830)
T ss_pred HHHc--CCCCCHHHHHHH---HHHcCCCHHHHHHHHHHHH
Confidence 5544 456788877555 4456788888877766555
No 28
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=74.74 E-value=1e+02 Score=31.24 Aligned_cols=106 Identities=17% Similarity=0.240 Sum_probs=65.0
Q ss_pred CCEEEEecCccccCchhHHHHHHHHHHhhccCCeEEEEeecCCChhHhhhccHHHHhhcccceeeeCCc-chHHHHHHHH
Q 042861 231 NPVVVIVDDIERCCGSVLSDFILMFSEWVLKIPVILIMGVTTTLDAPRNILLSNVLQCLCPCMFTLGTP-SERMDAIIEA 309 (457)
Q Consensus 231 ~~lVvil~D~Esfd~~VL~DlI~llSs~~~~IP~vLVfGIATs~~~~~~~Lp~s~~slL~~~~F~~~s~-~~~l~~I~e~ 309 (457)
.+-||++++.+.++....+.|+..+..... ..+|||. ++.++ .|+....++.. .|.+... .+-+..++..
T Consensus 117 ~~~vviidea~~l~~~~~~~Ll~~le~~~~--~~~lIl~-~~~~~----~l~~~l~sr~~--~~~~~~~~~~~l~~~l~~ 187 (355)
T TIGR02397 117 KYKVYIIDEVHMLSKSAFNALLKTLEEPPE--HVVFILA-TTEPH----KIPATILSRCQ--RFDFKRIPLEDIVERLKK 187 (355)
T ss_pred CceEEEEeChhhcCHHHHHHHHHHHhCCcc--ceeEEEE-eCCHH----HHHHHHHhhee--EEEcCCCCHHHHHHHHHH
Confidence 445888999999998888888776644222 2344443 34433 33444455443 4444433 3445566666
Q ss_pred HHhcCCCceeeChhhHHHHHHHHHhccCCHHHHHHHHHHHH
Q 042861 310 VLVRQCSGFSISHKVAVFMRNYFVRQDGTITSFIRALKIAC 350 (457)
Q Consensus 310 vll~~~~~f~Lg~~v~~~L~d~F~~~d~Sv~~fi~~LK~a~ 350 (457)
.+... ...+++.+++.|.+. .+.++...++.++-+.
T Consensus 188 ~~~~~--g~~i~~~a~~~l~~~---~~g~~~~a~~~lekl~ 223 (355)
T TIGR02397 188 ILDKE--GIKIEDEALELIARA---ADGSLRDALSLLDQLI 223 (355)
T ss_pred HHHHc--CCCCCHHHHHHHHHH---cCCChHHHHHHHHHHH
Confidence 66554 457888888877654 4567888887775544
No 29
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=73.24 E-value=1.4e+02 Score=33.23 Aligned_cols=105 Identities=14% Similarity=0.196 Sum_probs=63.2
Q ss_pred CCEEEEecCccccCchhHHHHHHHHHHhhccCCeEEEEeecCCChhHhhhccHHHHhhcccceeeeCCcchHHHHHHHHH
Q 042861 231 NPVVVIVDDIERCCGSVLSDFILMFSEWVLKIPVILIMGVTTTLDAPRNILLSNVLQCLCPCMFTLGTPSERMDAIIEAV 310 (457)
Q Consensus 231 ~~lVvil~D~Esfd~~VL~DlI~llSs~~~~IP~vLVfGIATs~~~~~~~Lp~s~~slL~~~~F~~~s~~~~l~~I~e~v 310 (457)
..-||||++.+.++..-++.|+..+-..... .+||| +++.. ++ +.....++...-.|.-.+.. -+...+.++
T Consensus 120 ~~kVvIIDEa~~L~~~a~naLLk~LEepp~~--tv~Il-~t~~~---~k-ll~tI~SR~~~i~f~~l~~~-el~~~L~~~ 191 (585)
T PRK14950 120 RYKVYIIDEVHMLSTAAFNALLKTLEEPPPH--AIFIL-ATTEV---HK-VPATILSRCQRFDFHRHSVA-DMAAHLRKI 191 (585)
T ss_pred CeEEEEEeChHhCCHHHHHHHHHHHhcCCCC--eEEEE-EeCCh---hh-hhHHHHhccceeeCCCCCHH-HHHHHHHHH
Confidence 4568999999999999888888776664432 33444 34443 33 33334444333334433333 334444555
Q ss_pred HhcCCCceeeChhhHHHHHHHHHhccCCHHHHHHHHHH
Q 042861 311 LVRQCSGFSISHKVAVFMRNYFVRQDGTITSFIRALKI 348 (457)
Q Consensus 311 ll~~~~~f~Lg~~v~~~L~d~F~~~d~Sv~~fi~~LK~ 348 (457)
.... ...+.+.++..|.+ ..+.++...+..|+-
T Consensus 192 a~~e--gl~i~~eal~~La~---~s~Gdlr~al~~Lek 224 (585)
T PRK14950 192 AAAE--GINLEPGALEAIAR---AATGSMRDAENLLQQ 224 (585)
T ss_pred HHHc--CCCCCHHHHHHHHH---HcCCCHHHHHHHHHH
Confidence 5443 46688888877654 456788888888874
No 30
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=72.86 E-value=45 Score=31.71 Aligned_cols=108 Identities=16% Similarity=0.159 Sum_probs=68.7
Q ss_pred EEEEecCccccCchhHHHHHHHHHHhhccCCeEEEEeecCCChhHhhhccHHHHhhcc-cceeeeCCcchH-HHHHHHHH
Q 042861 233 VVVIVDDIERCCGSVLSDFILMFSEWVLKIPVILIMGVTTTLDAPRNILLSNVLQCLC-PCMFTLGTPSER-MDAIIEAV 310 (457)
Q Consensus 233 lVvil~D~Esfd~~VL~DlI~llSs~~~~IP~vLVfGIATs~~~~~~~Lp~s~~slL~-~~~F~~~s~~~~-l~~I~e~v 310 (457)
-+|+|+|++..+......|..++......-..++|+.-.+.+ ....+-....+++. +..+.+++..+. .-.++.++
T Consensus 92 ~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~--~~~~l~~~L~sr~~~~~~i~l~pl~~~~~~~~l~~~ 169 (227)
T PRK08903 92 ELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAP--LALPLREDLRTRLGWGLVYELKPLSDADKIAALKAA 169 (227)
T ss_pred CEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCH--HhCCCCHHHHHHHhcCeEEEecCCCHHHHHHHHHHH
Confidence 378899999999888777877777665544433444333332 22234566666765 467888888743 22344444
Q ss_pred HhcCCCceeeChhhHHHHHHHHHhccCCHHHHHHHHH
Q 042861 311 LVRQCSGFSISHKVAVFMRNYFVRQDGTITSFIRALK 347 (457)
Q Consensus 311 ll~~~~~f~Lg~~v~~~L~d~F~~~d~Sv~~fi~~LK 347 (457)
... ..+.+.+.++.+|.. ....++..+...|+
T Consensus 170 ~~~--~~v~l~~~al~~L~~---~~~gn~~~l~~~l~ 201 (227)
T PRK08903 170 AAE--RGLQLADEVPDYLLT---HFRRDMPSLMALLD 201 (227)
T ss_pred HHH--cCCCCCHHHHHHHHH---hccCCHHHHHHHHH
Confidence 333 357899999999987 35566666655555
No 31
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=72.52 E-value=42 Score=36.99 Aligned_cols=121 Identities=16% Similarity=0.275 Sum_probs=80.3
Q ss_pred CCCEEEEecCccc-cCchhHHHHHHHHHHhhc--cC-CeEEEEe--ecCCCh--------hHhhhccHHHHhhcccceee
Q 042861 230 NNPVVVIVDDIER-CCGSVLSDFILMFSEWVL--KI-PVILIMG--VTTTLD--------APRNILLSNVLQCLCPCMFT 295 (457)
Q Consensus 230 ~~~lVvil~D~Es-fd~~VL~DlI~llSs~~~--~I-P~vLVfG--IATs~~--------~~~~~Lp~s~~slL~~~~F~ 295 (457)
..+-||.|||+=. |..+- ..|=.+|.+|+. +. |+|+|+. =..+.+ ..++.||++++....+....
T Consensus 131 ~~~kvILVEDlPN~~~~~~-~~f~~~L~~~l~~~~~~PlV~iiSe~~~~~~~~~~~~~~~t~~~L~~~~il~~~~i~~I~ 209 (519)
T PF03215_consen 131 SNKKVILVEDLPNVFHRDT-SRFREALRQYLRSSRCLPLVFIISETESLSGDNSYRSNSFTAERLFPKEILNHPGITRIK 209 (519)
T ss_pred CCceEEEeeccccccchhH-HHHHHHHHHHHHcCCCCCEEEEEecccccCCCCcccccchhhhhccCHHHHhCCCceEEE
Confidence 3567889999974 66666 888888888873 55 9998887 111111 24568999999988888866
Q ss_pred eCCcc-hHHHHHHHHHHhcCCC---ceeeChhhHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 042861 296 LGTPS-ERMDAIIEAVLVRQCS---GFSISHKVAVFMRNYFVRQDGTITSFIRALKIACS 351 (457)
Q Consensus 296 ~~s~~-~~l~~I~e~vll~~~~---~f~Lg~~v~~~L~d~F~~~d~Sv~~fi~~LK~a~M 351 (457)
+.+-. ..|-..++++...... .-.--+.-..+|..+....++-|.+-|..|||.++
T Consensus 210 FNpIa~T~mkKaL~rI~~~E~~~~~~~~~~p~~~~~l~~I~~~s~GDIRsAIn~LQf~~~ 269 (519)
T PF03215_consen 210 FNPIAPTFMKKALKRILKKEARSSSGKNKVPDKQSVLDSIAESSNGDIRSAINNLQFWCL 269 (519)
T ss_pred ecCCCHHHHHHHHHHHHHHHhhhhcCCccCCChHHHHHHHHHhcCchHHHHHHHHHHHhc
Confidence 65544 4555555555544311 11111222335556677788999999999999999
No 32
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=72.21 E-value=1.1e+02 Score=33.01 Aligned_cols=110 Identities=14% Similarity=0.245 Sum_probs=71.4
Q ss_pred EEEEecCccccCc--hhHHHHHHHHHHhhccCCeEEEEeecCCChhHhhhccHHHHhhc-ccceeeeCCcc-hHHHHHHH
Q 042861 233 VVVIVDDIERCCG--SVLSDFILMFSEWVLKIPVILIMGVTTTLDAPRNILLSNVLQCL-CPCMFTLGTPS-ERMDAIIE 308 (457)
Q Consensus 233 lVvil~D~Esfd~--~VL~DlI~llSs~~~~IP~vLVfGIATs~~~~~~~Lp~s~~slL-~~~~F~~~s~~-~~l~~I~e 308 (457)
=|++|+|+..+.. ....+|..++......=. .+|++-.+++..+.. +.....+++ .|-.+++.++. +-.-++++
T Consensus 204 dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k-~IIlts~~~p~~l~~-l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~ 281 (445)
T PRK12422 204 DALFIEDIEVFSGKGATQEEFFHTFNSLHTEGK-LIVISSTCAPQDLKA-MEERLISRFEWGIAIPLHPLTKEGLRSFLE 281 (445)
T ss_pred CEEEEcchhhhcCChhhHHHHHHHHHHHHHCCC-cEEEecCCCHHHHhh-hHHHHHhhhcCCeEEecCCCCHHHHHHHHH
Confidence 3888999998865 466777777765443211 355554566666654 455555555 46678887765 55556666
Q ss_pred HHHhcCCCceeeChhhHHHHHHHHHhccCCHHHHHHHHHHH
Q 042861 309 AVLVRQCSGFSISHKVAVFMRNYFVRQDGTITSFIRALKIA 349 (457)
Q Consensus 309 ~vll~~~~~f~Lg~~v~~~L~d~F~~~d~Sv~~fi~~LK~a 349 (457)
.-.... .+.++..++.||...+. .++..+..+|.-.
T Consensus 282 ~k~~~~--~~~l~~evl~~la~~~~---~dir~L~g~l~~l 317 (445)
T PRK12422 282 RKAEAL--SIRIEETALDFLIEALS---SNVKSLLHALTLL 317 (445)
T ss_pred HHHHHc--CCCCCHHHHHHHHHhcC---CCHHHHHHHHHHH
Confidence 655554 57899999999987655 4565555555533
No 33
>PLN03025 replication factor C subunit; Provisional
Probab=69.98 E-value=1.3e+02 Score=30.48 Aligned_cols=173 Identities=13% Similarity=0.119 Sum_probs=98.8
Q ss_pred ccceEEEecCCCCCCchHHHHHHHHHHhhhc--CcEEEEeeCCCCCCCCChhHHHHHHHHHHHcCCCCcccHHHHHHHHH
Q 042861 147 QLFTGLVLTKNMEFVDDLLTFEELGRHLKSQ--GCHVANLSSLDFTAKSGIGGCLRSLLRQFLVAPLDAADISILASWYR 224 (457)
Q Consensus 147 ~IPTAllltGnin~~dh~~~F~~L~~~L~~~--~~~Vv~L~s~dc~~~~~i~~~Lk~ll~qli~~~~~~yDl~~L~~Wy~ 224 (457)
.+|- +++.|.-. ++-..+-..+...+... ...++.+++.+.. ++ ..++..++.+......
T Consensus 33 ~~~~-lll~Gp~G-~GKTtla~~la~~l~~~~~~~~~~eln~sd~~---~~-~~vr~~i~~~~~~~~~------------ 94 (319)
T PLN03025 33 NMPN-LILSGPPG-TGKTTSILALAHELLGPNYKEAVLELNASDDR---GI-DVVRNKIKMFAQKKVT------------ 94 (319)
T ss_pred CCce-EEEECCCC-CCHHHHHHHHHHHHhcccCccceeeecccccc---cH-HHHHHHHHHHHhcccc------------
Confidence 4554 56666222 34344556666666332 2457777776653 22 3455555544332100
Q ss_pred hhcCCCCCEEEEecCccccCchhHHHHHHHHHHhhccCCeEEEEeecCCChhHhhhccHHHHhhcccceeeeCCcchHHH
Q 042861 225 EQGNYNNPVVVIVDDIERCCGSVLSDFILMFSEWVLKIPVILIMGVTTTLDAPRNILLSNVLQCLCPCMFTLGTPSERMD 304 (457)
Q Consensus 225 ~~~~~~~~lVvil~D~Esfd~~VL~DlI~llSs~~~~IP~vLVfGIATs~~~~~~~Lp~s~~slL~~~~F~~~s~~~~l~ 304 (457)
.....+-||+++|.+.++...-+-|..++-.+.....|+|+- +.. ..+.....++...-.|.-.+..+ +-
T Consensus 95 --~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~---n~~----~~i~~~L~SRc~~i~f~~l~~~~-l~ 164 (319)
T PLN03025 95 --LPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALAC---NTS----SKIIEPIQSRCAIVRFSRLSDQE-IL 164 (319)
T ss_pred --CCCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEe---CCc----cccchhHHHhhhcccCCCCCHHH-HH
Confidence 001235699999999999887666666665554444444432 222 23344455554433444444433 34
Q ss_pred HHHHHHHhcCCCceeeChhhHHHHHHHHHhccCCHHHHHHHHHHHHHh
Q 042861 305 AIIEAVLVRQCSGFSISHKVAVFMRNYFVRQDGTITSFIRALKIACSQ 352 (457)
Q Consensus 305 ~I~e~vll~~~~~f~Lg~~v~~~L~d~F~~~d~Sv~~fi~~LK~a~M~ 352 (457)
..++.+.... .+.+++.++.+|. ...+.++...+..|+.+++.
T Consensus 165 ~~L~~i~~~e--gi~i~~~~l~~i~---~~~~gDlR~aln~Lq~~~~~ 207 (319)
T PLN03025 165 GRLMKVVEAE--KVPYVPEGLEAII---FTADGDMRQALNNLQATHSG 207 (319)
T ss_pred HHHHHHHHHc--CCCCCHHHHHHHH---HHcCCCHHHHHHHHHHHHhc
Confidence 4445555554 6778899887764 45678999999999987754
No 34
>PRK05642 DNA replication initiation factor; Validated
Probab=69.96 E-value=36 Score=33.11 Aligned_cols=114 Identities=15% Similarity=0.155 Sum_probs=76.7
Q ss_pred EEEecCccccCc--hhHHHHHHHHHHhhccCCeEEEEeecCCChhHhhhccHHHHhhcccceeeeCCcc-hHHHHHHHHH
Q 042861 234 VVIVDDIERCCG--SVLSDFILMFSEWVLKIPVILIMGVTTTLDAPRNILLSNVLQCLCPCMFTLGTPS-ERMDAIIEAV 310 (457)
Q Consensus 234 Vvil~D~Esfd~--~VL~DlI~llSs~~~~IP~vLVfGIATs~~~~~~~Lp~s~~slL~~~~F~~~s~~-~~l~~I~e~v 310 (457)
+++++|++.... ..-.+|..++.....+= -.+|++=.+++..+...+|.=..++-.+-.|.+.+.. +..-++++.-
T Consensus 100 ~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g-~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~~k 178 (234)
T PRK05642 100 LVCLDDLDVIAGKADWEEALFHLFNRLRDSG-RRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQLR 178 (234)
T ss_pred EEEEechhhhcCChHHHHHHHHHHHHHHhcC-CEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHHHHH
Confidence 678899987653 44466777776655321 2367777777777766667766666566678877744 4555556533
Q ss_pred HhcCCCceeeChhhHHHHHHHHHhccCCHHHHHHHHHHHH
Q 042861 311 LVRQCSGFSISHKVAVFMRNYFVRQDGTITSFIRALKIAC 350 (457)
Q Consensus 311 ll~~~~~f~Lg~~v~~~L~d~F~~~d~Sv~~fi~~LK~a~ 350 (457)
.... .+.+++.++.+|..++.+.--.+.+.+..|..+-
T Consensus 179 a~~~--~~~l~~ev~~~L~~~~~~d~r~l~~~l~~l~~~~ 216 (234)
T PRK05642 179 ASRR--GLHLTDEVGHFILTRGTRSMSALFDLLERLDQAS 216 (234)
T ss_pred HHHc--CCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 3332 5889999999998888776667777777775433
No 35
>PRK09087 hypothetical protein; Validated
Probab=69.68 E-value=55 Score=31.79 Aligned_cols=110 Identities=11% Similarity=0.095 Sum_probs=75.6
Q ss_pred EEEecCccccCchhHHHHHHHHHHhhccCCeEEEEeecCCChhHhhhccHHHHhhcccceeeeCCcc-hHHHHHHHHHHh
Q 042861 234 VVIVDDIERCCGSVLSDFILMFSEWVLKIPVILIMGVTTTLDAPRNILLSNVLQCLCPCMFTLGTPS-ERMDAIIEAVLV 312 (457)
Q Consensus 234 Vvil~D~Esfd~~VL~DlI~llSs~~~~IP~vLVfGIATs~~~~~~~Lp~s~~slL~~~~F~~~s~~-~~l~~I~e~vll 312 (457)
+|+++|++.... --..|..++.....+= -.+|++-.+.+..+...+|.=..++-.+..+.+.... +-..+++++.+.
T Consensus 90 ~l~iDDi~~~~~-~~~~lf~l~n~~~~~g-~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~~~ 167 (226)
T PRK09087 90 PVLIEDIDAGGF-DETGLFHLINSVRQAG-TSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFKLFA 167 (226)
T ss_pred eEEEECCCCCCC-CHHHHHHHHHHHHhCC-CeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHHHHH
Confidence 677799987642 2345666665444321 2377777777777766666655555566778887776 677778887777
Q ss_pred cCCCceeeChhhHHHHHHHHHhccCCHHHHHHHHH
Q 042861 313 RQCSGFSISHKVAVFMRNYFVRQDGTITSFIRALK 347 (457)
Q Consensus 313 ~~~~~f~Lg~~v~~~L~d~F~~~d~Sv~~fi~~LK 347 (457)
.. .+.+++.++.||..++.+.--++...+..|.
T Consensus 168 ~~--~~~l~~ev~~~La~~~~r~~~~l~~~l~~L~ 200 (226)
T PRK09087 168 DR--QLYVDPHVVYYLVSRMERSLFAAQTIVDRLD 200 (226)
T ss_pred Hc--CCCCCHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 64 6899999999999988866566666666664
No 36
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=68.96 E-value=42 Score=37.94 Aligned_cols=117 Identities=14% Similarity=0.283 Sum_probs=70.1
Q ss_pred CCCEEEEecCc----cccCchhHHHHHH-HHHHhhccCCeEEEEeecCCCh----------hHhhhccHHHHhhccccee
Q 042861 230 NNPVVVIVDDI----ERCCGSVLSDFIL-MFSEWVLKIPVILIMGVTTTLD----------APRNILLSNVLQCLCPCMF 294 (457)
Q Consensus 230 ~~~lVvil~D~----Esfd~~VL~DlI~-llSs~~~~IP~vLVfGIATs~~----------~~~~~Lp~s~~slL~~~~F 294 (457)
..+.||+|+|+ .. +...+++++. +..+ ..++|+++|.. -++. ..++.|.+..++...+..+
T Consensus 194 ~~~~IILIDEiPn~~~r-~~~~lq~lLr~~~~e-~~~~pLI~I~T--E~~~~~~~~~~~~f~~~~lL~~eLls~~rv~~I 269 (637)
T TIGR00602 194 TDKKIILVEDLPNQFYR-DTRALHEILRWKYVS-IGRCPLVFIIT--ESLEGDNNQRRLLFPAETIMNKEILEEPRVSNI 269 (637)
T ss_pred CceeEEEeecchhhchh-hHHHHHHHHHHHhhc-CCCceEEEEec--CCccccccccccccchhcccCHhHhcccceeEE
Confidence 46789999999 44 4457888777 4433 45677544433 1111 1234445677765566666
Q ss_pred eeCCcc-hHHHHHHHHHHhcCCC----ce-eeChhhHHHHHHHHHhccCCHHHHHHHHHHHHHhh
Q 042861 295 TLGTPS-ERMDAIIEAVLVRQCS----GF-SISHKVAVFMRNYFVRQDGTITSFIRALKIACSQH 353 (457)
Q Consensus 295 ~~~s~~-~~l~~I~e~vll~~~~----~f-~Lg~~v~~~L~d~F~~~d~Sv~~fi~~LK~a~M~H 353 (457)
.+.+-. ..|...++.++..... .. ..++.++..| -...++.+.+-|..|+++++..
T Consensus 270 ~FnPia~t~l~K~L~rIl~~E~~~~~~~~~~p~~~~l~~I---~~~s~GDiRsAIn~LQf~~~~~ 331 (637)
T TIGR00602 270 SFNPIAPTIMKKFLNRIVTIEAKKNGEKIKVPKKTSVELL---CQGCSGDIRSAINSLQFSSSKS 331 (637)
T ss_pred EeCCCCHHHHHHHHHHHHHhhhhccccccccCCHHHHHHH---HHhCCChHHHHHHHHHHHHhcC
Confidence 666544 4545555555544311 11 1244555444 4488899999999999998765
No 37
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=68.42 E-value=1.3e+02 Score=29.80 Aligned_cols=108 Identities=11% Similarity=0.140 Sum_probs=69.8
Q ss_pred CCEEEEecCccccCchhHHHHHHHHHHhhccCCeEEEEeecCCChhHhhhccHHHHhhcccceeeeCCcchHHHHHHHHH
Q 042861 231 NPVVVIVDDIERCCGSVLSDFILMFSEWVLKIPVILIMGVTTTLDAPRNILLSNVLQCLCPCMFTLGTPSERMDAIIEAV 310 (457)
Q Consensus 231 ~~lVvil~D~Esfd~~VL~DlI~llSs~~~~IP~vLVfGIATs~~~~~~~Lp~s~~slL~~~~F~~~s~~~~l~~I~e~v 310 (457)
.+-||++++.+.+.......|..++..+.....++|+ ++.. ..+.....++...-.|.-.+. +-+..+++..
T Consensus 102 ~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~---~~~~----~~l~~~l~sr~~~~~~~~l~~-~ei~~~l~~~ 173 (319)
T PRK00440 102 PFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILS---CNYS----SKIIDPIQSRCAVFRFSPLKK-EAVAERLRYI 173 (319)
T ss_pred CceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEE---eCCc----cccchhHHHHhheeeeCCCCH-HHHHHHHHHH
Confidence 4568999999999988888888888777766655543 2222 223333444444333443333 3345556666
Q ss_pred HhcCCCceeeChhhHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 042861 311 LVRQCSGFSISHKVAVFMRNYFVRQDGTITSFIRALKIACS 351 (457)
Q Consensus 311 ll~~~~~f~Lg~~v~~~L~d~F~~~d~Sv~~fi~~LK~a~M 351 (457)
+... .+.+.+..++.|.. ..+.++...+..|+.+..
T Consensus 174 ~~~~--~~~i~~~al~~l~~---~~~gd~r~~~~~l~~~~~ 209 (319)
T PRK00440 174 AENE--GIEITDDALEAIYY---VSEGDMRKAINALQAAAA 209 (319)
T ss_pred HHHc--CCCCCHHHHHHHHH---HcCCCHHHHHHHHHHHHH
Confidence 6554 46788998877754 467889999999987765
No 38
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=65.95 E-value=2.1e+02 Score=31.40 Aligned_cols=108 Identities=13% Similarity=0.173 Sum_probs=72.0
Q ss_pred CCCEEEEecCccccCchhHHHHHHHHHHhhccCCeEEEEeecCCChhHhhhccHHHHhhcccceeeeCCcchHHHHHHHH
Q 042861 230 NNPVVVIVDDIERCCGSVLSDFILMFSEWVLKIPVILIMGVTTTLDAPRNILLSNVLQCLCPCMFTLGTPSERMDAIIEA 309 (457)
Q Consensus 230 ~~~lVvil~D~Esfd~~VL~DlI~llSs~~~~IP~vLVfGIATs~~~~~~~Lp~s~~slL~~~~F~~~s~~~~l~~I~e~ 309 (457)
.+.-|+||++.+.++....+.|+..+.+... +++|| ++|+- ...++...+++...-.|.-.+.. -+...++.
T Consensus 120 g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~--~viFI--LaTte---~~kI~~TI~SRCq~~~f~~ls~~-~i~~~L~~ 191 (484)
T PRK14956 120 GKYKVYIIDEVHMLTDQSFNALLKTLEEPPA--HIVFI--LATTE---FHKIPETILSRCQDFIFKKVPLS-VLQDYSEK 191 (484)
T ss_pred CCCEEEEEechhhcCHHHHHHHHHHhhcCCC--ceEEE--eecCC---hhhccHHHHhhhheeeecCCCHH-HHHHHHHH
Confidence 3567999999999999999999988866432 33333 45553 24677778887765555544433 33344455
Q ss_pred HHhcCCCceeeChhhHHHHHHHHHhccCCHHHHHHHHHHHH
Q 042861 310 VLVRQCSGFSISHKVAVFMRNYFVRQDGTITSFIRALKIAC 350 (457)
Q Consensus 310 vll~~~~~f~Lg~~v~~~L~d~F~~~d~Sv~~fi~~LK~a~ 350 (457)
+.... ...+.+.++..| ....++++...+..|.-++
T Consensus 192 i~~~E--gi~~e~eAL~~I---a~~S~Gd~RdAL~lLeq~i 227 (484)
T PRK14956 192 LCKIE--NVQYDQEGLFWI---AKKGDGSVRDMLSFMEQAI 227 (484)
T ss_pred HHHHc--CCCCCHHHHHHH---HHHcCChHHHHHHHHHHHH
Confidence 54443 466788877555 5677888888888886654
No 39
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=63.95 E-value=2.1e+02 Score=33.66 Aligned_cols=199 Identities=15% Similarity=0.133 Sum_probs=116.1
Q ss_pred cceE-EEecCCCCCCchHHHHHHHHHHhhhcCcEEEEeeCCCCCCCCChhHHHHHHHHHHHcCCC--Cccc-HHHHHHHH
Q 042861 148 LFTG-LVLTKNMEFVDDLLTFEELGRHLKSQGCHVANLSSLDFTAKSGIGGCLRSLLRQFLVAPL--DAAD-ISILASWY 223 (457)
Q Consensus 148 IPTA-llltGnin~~dh~~~F~~L~~~L~~~~~~Vv~L~s~dc~~~~~i~~~Lk~ll~qli~~~~--~~yD-l~~L~~Wy 223 (457)
=|.| +++.|... +.--.+-..|.+.|-.....++.++-.++. . +..+.+|++... ..|+ -..|....
T Consensus 594 ~p~~~~lf~Gp~G-vGKT~lA~~La~~l~~~~~~~~~~dmse~~----~----~~~~~~l~g~~~gyvg~~~~g~L~~~v 664 (852)
T TIGR03345 594 KPLGVFLLVGPSG-VGKTETALALAELLYGGEQNLITINMSEFQ----E----AHTVSRLKGSPPGYVGYGEGGVLTEAV 664 (852)
T ss_pred CCceEEEEECCCC-CCHHHHHHHHHHHHhCCCcceEEEeHHHhh----h----hhhhccccCCCCCcccccccchHHHHH
Confidence 3555 66777222 343445577777775444466666644332 1 334455665432 2333 22354454
Q ss_pred HhhcCCCCCEEEEecCccccCchhHHHHHHHHHHhh------ccCC---eEEEEe--ecCC------------C------
Q 042861 224 REQGNYNNPVVVIVDDIERCCGSVLSDFILMFSEWV------LKIP---VILIMG--VTTT------------L------ 274 (457)
Q Consensus 224 ~~~~~~~~~lVvil~D~Esfd~~VL~DlI~llSs~~------~~IP---~vLVfG--IATs------------~------ 274 (457)
+. ++.=||+|+++|-.++.|.+.|..++.... ..+- -++||. +... +
T Consensus 665 ~~----~p~svvllDEieka~~~v~~~Llq~ld~g~l~d~~Gr~vd~~n~iiI~TSNlg~~~~~~~~~~~~~~~~~~~~~ 740 (852)
T TIGR03345 665 RR----KPYSVVLLDEVEKAHPDVLELFYQVFDKGVMEDGEGREIDFKNTVILLTSNAGSDLIMALCADPETAPDPEALL 740 (852)
T ss_pred Hh----CCCcEEEEechhhcCHHHHHHHHHHhhcceeecCCCcEEeccccEEEEeCCCchHHHHHhccCcccCcchHHHH
Confidence 33 456699999999999999999999997654 1111 223332 1100 0
Q ss_pred ----hhHhhhccHHHHhhcccceeeeCCcchHHHHHHHHHHhcC--------CCceeeChhhHHHHHHHHHhccCCHHHH
Q 042861 275 ----DAPRNILLSNVLQCLCPCMFTLGTPSERMDAIIEAVLVRQ--------CSGFSISHKVAVFMRNYFVRQDGTITSF 342 (457)
Q Consensus 275 ----~~~~~~Lp~s~~slL~~~~F~~~s~~~~l~~I~e~vll~~--------~~~f~Lg~~v~~~L~d~F~~~d~Sv~~f 342 (457)
..+.+.++...++++..-.|. +-..+-+.+|++..+... ...+.+.+.+..+|.+.-....+-...+
T Consensus 741 ~~~~~~~~~~f~PEflnRi~iI~F~-pLs~e~l~~Iv~~~L~~l~~rl~~~~gi~l~i~d~a~~~La~~g~~~~~GAR~L 819 (852)
T TIGR03345 741 EALRPELLKVFKPAFLGRMTVIPYL-PLDDDVLAAIVRLKLDRIARRLKENHGAELVYSEALVEHIVARCTEVESGARNI 819 (852)
T ss_pred HHHHHHHHHhccHHHhcceeEEEeC-CCCHHHHHHHHHHHHHHHHHHHHHhcCceEEECHHHHHHHHHHcCCCCCChHHH
Confidence 224456777888888755566 333455566665554331 3568899999999988766555566555
Q ss_pred HHHHHHHHHhhhccCcccccccc
Q 042861 343 IRALKIACSQHFSMEPLSIILKG 365 (457)
Q Consensus 343 i~~LK~a~M~HFy~nPLSvL~~~ 365 (457)
.+.|+--+ .+|||-.+..
T Consensus 820 ~r~Ie~~i-----~~~la~~~l~ 837 (852)
T TIGR03345 820 DAILNQTL-----LPELSRQILE 837 (852)
T ss_pred HHHHHHHH-----HHHHHHHHHh
Confidence 55554433 4777766543
No 40
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=63.27 E-value=85 Score=31.07 Aligned_cols=106 Identities=16% Similarity=0.099 Sum_probs=70.5
Q ss_pred CccceEEEecCCCCCCchHHHHHHHHHHhhhc---------------------CcEEEEeeCCCCCCCCChhHHHHHHHH
Q 042861 146 KQLFTGLVLTKNMEFVDDLLTFEELGRHLKSQ---------------------GCHVANLSSLDFTAKSGIGGCLRSLLR 204 (457)
Q Consensus 146 ~~IPTAllltGnin~~dh~~~F~~L~~~L~~~---------------------~~~Vv~L~s~dc~~~~~i~~~Lk~ll~ 204 (457)
+++|-|+++.| -.-..-..+...|...|.-. .+-|..|++.+-.. .+.....++
T Consensus 21 ~~~~halL~~G-p~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~s~~~~----~~i~~~~vr 95 (325)
T COG0470 21 GRLPHALLFYG-PPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNPSDLRK----IDIIVEQVR 95 (325)
T ss_pred CCCCceeeeeC-CCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEecccccCC----CcchHHHHH
Confidence 36777999998 22234445667777766421 14688888876542 112344444
Q ss_pred HHHcCCCCcccHHHHHHHHHhhcCCCCCEEEEecCccccCchhHHHHHHHHHHhhccCCeEEEEe
Q 042861 205 QFLVAPLDAADISILASWYREQGNYNNPVVVIVDDIERCCGSVLSDFILMFSEWVLKIPVILIMG 269 (457)
Q Consensus 205 qli~~~~~~yDl~~L~~Wy~~~~~~~~~lVvil~D~Esfd~~VL~DlI~llSs~~~~IP~vLVfG 269 (457)
++.+... ......+.-||++++.|..+...-+.+...+-.+-...||+|+-.
T Consensus 96 ~~~~~~~-------------~~~~~~~~kviiidead~mt~~A~nallk~lEep~~~~~~il~~n 147 (325)
T COG0470 96 ELAEFLS-------------ESPLEGGYKVVIIDEADKLTEDAANALLKTLEEPPKNTRFILITN 147 (325)
T ss_pred HHHHHhc-------------cCCCCCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCeEEEEEcC
Confidence 4433210 001124567999999999999999999999999999999998865
No 41
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=61.58 E-value=1.5e+02 Score=31.01 Aligned_cols=119 Identities=14% Similarity=0.193 Sum_probs=71.2
Q ss_pred ccHHHHHHHHHhhcCCCCCEEEEecCccccCchhHHHHHHHHHHhhccCCeEEEEeecCCChhHhhhccHHHHhhcccce
Q 042861 214 ADISILASWYREQGNYNNPVVVIVDDIERCCGSVLSDFILMFSEWVLKIPVILIMGVTTTLDAPRNILLSNVLQCLCPCM 293 (457)
Q Consensus 214 yDl~~L~~Wy~~~~~~~~~lVvil~D~Esfd~~VL~DlI~llSs~~~~IP~vLVfGIATs~~~~~~~Lp~s~~slL~~~~ 293 (457)
.++..+..+..........-||||++.|.++..-.+.|+.++-+.-.+.-|+|+ ++.++ .|+....++.. .
T Consensus 124 d~iR~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEpp~~~~fiLi---t~~~~----~llptIrSRc~--~ 194 (351)
T PRK09112 124 DEIRRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPPARALFILI---SHSSG----RLLPTIRSRCQ--P 194 (351)
T ss_pred HHHHHHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcCCCCceEEEE---ECChh----hccHHHHhhcc--E
Confidence 456667777654333456679999999999999999999999886666666666 34443 33455556554 4
Q ss_pred eeeCCcc-hHHHHHHHHHHhcCCCceeeChhhHHHHHHHHHhccCCHHHHHHHHHH
Q 042861 294 FTLGTPS-ERMDAIIEAVLVRQCSGFSISHKVAVFMRNYFVRQDGTITSFIRALKI 348 (457)
Q Consensus 294 F~~~s~~-~~l~~I~e~vll~~~~~f~Lg~~v~~~L~d~F~~~d~Sv~~fi~~LK~ 348 (457)
+.+.+.+ +-+.++++..-... + +.+.....+ ....+.++-.-+.-+..
T Consensus 195 i~l~pl~~~~~~~~L~~~~~~~--~--~~~~~~~~i---~~~s~G~pr~Al~ll~~ 243 (351)
T PRK09112 195 ISLKPLDDDELKKALSHLGSSQ--G--SDGEITEAL---LQRSKGSVRKALLLLNY 243 (351)
T ss_pred EEecCCCHHHHHHHHHHhhccc--C--CCHHHHHHH---HHHcCCCHHHHHHHHhc
Confidence 4444333 44455555422111 1 445554433 33555666655555543
No 42
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=61.24 E-value=2.4e+02 Score=30.34 Aligned_cols=173 Identities=15% Similarity=0.171 Sum_probs=101.1
Q ss_pred EEEecCCCCCCchHHHHHHHHHHhhhc--CcEEEEeeCCCCCCCCChhHHHHHHHHHHHcCCCCcccHHHHHHHHHhhcC
Q 042861 151 GLVLTKNMEFVDDLLTFEELGRHLKSQ--GCHVANLSSLDFTAKSGIGGCLRSLLRQFLVAPLDAADISILASWYREQGN 228 (457)
Q Consensus 151 AllltGnin~~dh~~~F~~L~~~L~~~--~~~Vv~L~s~dc~~~~~i~~~Lk~ll~qli~~~~~~yDl~~L~~Wy~~~~~ 228 (457)
.+++.|... .+--.+...++..+.+. +..|+-+++.++ +..++..+-. .+++.+...|..
T Consensus 132 ~l~lyG~~G-~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~f---------~~~~~~~~~~-----~~~~~f~~~~~~--- 193 (440)
T PRK14088 132 PLFIYGGVG-LGKTHLLQSIGNYVVQNEPDLRVMYITSEKF---------LNDLVDSMKE-----GKLNEFREKYRK--- 193 (440)
T ss_pred eEEEEcCCC-CcHHHHHHHHHHHHHHhCCCCeEEEEEHHHH---------HHHHHHHHhc-----ccHHHHHHHHHh---
Confidence 466666333 34345667777777553 346665665432 2223222211 124444444432
Q ss_pred CCCCEEEEecCccccCc--hhHHHHHHHHHHhhccCCeEEEEeecCCChhHhhhccHHHHhhcccceeeeCCcc-hHHHH
Q 042861 229 YNNPVVVIVDDIERCCG--SVLSDFILMFSEWVLKIPVILIMGVTTTLDAPRNILLSNVLQCLCPCMFTLGTPS-ERMDA 305 (457)
Q Consensus 229 ~~~~lVvil~D~Esfd~--~VL~DlI~llSs~~~~IP~vLVfGIATs~~~~~~~Lp~s~~slL~~~~F~~~s~~-~~l~~ 305 (457)
.+=|++++|...+-. ..-.+|..++......=. .+|++-...+..+....++-..++-.+-...+.++. +..-+
T Consensus 194 --~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k-~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~ 270 (440)
T PRK14088 194 --KVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGK-QIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKK 270 (440)
T ss_pred --cCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCC-eEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHH
Confidence 234889999997742 244667777766554322 455555566776766555444444446667777776 56777
Q ss_pred HHHHHHhcCCCceeeChhhHHHHHHHHHhccCCHHHHHHHH
Q 042861 306 IIEAVLVRQCSGFSISHKVAVFMRNYFVRQDGTITSFIRAL 346 (457)
Q Consensus 306 I~e~vll~~~~~f~Lg~~v~~~L~d~F~~~d~Sv~~fi~~L 346 (457)
|+++..... .+.++..++.+|.+++...--.+.+.+..|
T Consensus 271 IL~~~~~~~--~~~l~~ev~~~Ia~~~~~~~R~L~g~l~~l 309 (440)
T PRK14088 271 IARKMLEIE--HGELPEEVLNFVAENVDDNLRRLRGAIIKL 309 (440)
T ss_pred HHHHHHHhc--CCCCCHHHHHHHHhccccCHHHHHHHHHHH
Confidence 777776654 577999999999887765433455555544
No 43
>PRK08727 hypothetical protein; Validated
Probab=59.33 E-value=1.7e+02 Score=28.22 Aligned_cols=108 Identities=12% Similarity=0.087 Sum_probs=64.6
Q ss_pred EEEEecCccccCc--hhHHHHHHHHHHh-hccCCeEEEEeecCCChhHhhhccHHHHhhcccceeeeCCcc-hHHHHHHH
Q 042861 233 VVVIVDDIERCCG--SVLSDFILMFSEW-VLKIPVILIMGVTTTLDAPRNILLSNVLQCLCPCMFTLGTPS-ERMDAIIE 308 (457)
Q Consensus 233 lVvil~D~Esfd~--~VL~DlI~llSs~-~~~IP~vLVfGIATs~~~~~~~Lp~s~~slL~~~~F~~~s~~-~~l~~I~e 308 (457)
-+|+|+|++.+.. .--..+..++..- ....+ +|+--..+++.+...+|.=..++-.+..+.+++.. +-+.++++
T Consensus 95 dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~--vI~ts~~~p~~l~~~~~dL~SRl~~~~~~~l~~~~~e~~~~iL~ 172 (233)
T PRK08727 95 SLVALDGLESIAGQREDEVALFDFHNRARAAGIT--LLYTARQMPDGLALVLPDLRSRLAQCIRIGLPVLDDVARAAVLR 172 (233)
T ss_pred CEEEEeCcccccCChHHHHHHHHHHHHHHHcCCe--EEEECCCChhhhhhhhHHHHHHHhcCceEEecCCCHHHHHHHHH
Confidence 4899999997753 2222334433332 23334 44444456666666555544443344467877665 66667777
Q ss_pred HHHhcCCCceeeChhhHHHHHHHHHhccCCHHHHHHHHH
Q 042861 309 AVLVRQCSGFSISHKVAVFMRNYFVRQDGTITSFIRALK 347 (457)
Q Consensus 309 ~vll~~~~~f~Lg~~v~~~L~d~F~~~d~Sv~~fi~~LK 347 (457)
+..... .+.++..++.+|..++. .++...+..|+
T Consensus 173 ~~a~~~--~l~l~~e~~~~La~~~~---rd~r~~l~~L~ 206 (233)
T PRK08727 173 ERAQRR--GLALDEAAIDWLLTHGE---RELAGLVALLD 206 (233)
T ss_pred HHHHHc--CCCCCHHHHHHHHHhCC---CCHHHHHHHHH
Confidence 655554 58999999999987765 45555544444
No 44
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=59.24 E-value=2.9e+02 Score=30.76 Aligned_cols=107 Identities=12% Similarity=0.187 Sum_probs=69.7
Q ss_pred CCEEEEecCccccCchhHHHHHHHHHHhhccCCeEEEEeecCCChhHhhhccHHHHhhcccceeeeCCcchHHHHHHHHH
Q 042861 231 NPVVVIVDDIERCCGSVLSDFILMFSEWVLKIPVILIMGVTTTLDAPRNILLSNVLQCLCPCMFTLGTPSERMDAIIEAV 310 (457)
Q Consensus 231 ~~lVvil~D~Esfd~~VL~DlI~llSs~~~~IP~vLVfGIATs~~~~~~~Lp~s~~slL~~~~F~~~s~~~~l~~I~e~v 310 (457)
..-||+|+|.+.++....+.|+..+-+.-..+.|+| ++|. .++.+ ....++...-.|.-.+..+ +...+..+
T Consensus 119 ~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~fIL---~Ttd---~~kil-~tI~SRc~~~~f~~Ls~~e-I~~~L~~i 190 (546)
T PRK14957 119 RYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFIL---ATTD---YHKIP-VTILSRCIQLHLKHISQAD-IKDQLKII 190 (546)
T ss_pred CcEEEEEechhhccHHHHHHHHHHHhcCCCCceEEE---EECC---hhhhh-hhHHHheeeEEeCCCCHHH-HHHHHHHH
Confidence 466999999999999999999987776544444433 3343 34444 4466666544444444433 44445555
Q ss_pred HhcCCCceeeChhhHHHHHHHHHhccCCHHHHHHHHHHHH
Q 042861 311 LVRQCSGFSISHKVAVFMRNYFVRQDGTITSFIRALKIAC 350 (457)
Q Consensus 311 ll~~~~~f~Lg~~v~~~L~d~F~~~d~Sv~~fi~~LK~a~ 350 (457)
+... ...+.+..+.+|. ...+.++...+..|+-++
T Consensus 191 l~~e--gi~~e~~Al~~Ia---~~s~GdlR~alnlLek~i 225 (546)
T PRK14957 191 LAKE--NINSDEQSLEYIA---YHAKGSLRDALSLLDQAI 225 (546)
T ss_pred HHHc--CCCCCHHHHHHHH---HHcCCCHHHHHHHHHHHH
Confidence 5554 3577888776664 455789999999987655
No 45
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=58.75 E-value=19 Score=33.40 Aligned_cols=61 Identities=10% Similarity=0.191 Sum_probs=36.9
Q ss_pred HHHHHHHHhhcCCCCCEEEEecCccccC------chhHHHHHHHHHHhhccCCeEEEEeecCCChhHh
Q 042861 217 SILASWYREQGNYNNPVVVIVDDIERCC------GSVLSDFILMFSEWVLKIPVILIMGVTTTLDAPR 278 (457)
Q Consensus 217 ~~L~~Wy~~~~~~~~~lVvil~D~Esfd------~~VL~DlI~llSs~~~~IP~vLVfGIATs~~~~~ 278 (457)
..+..++....+...++||+|.|++.+. ...+..|..++..+...-++.+||. +|+.+..+
T Consensus 104 ~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~-~S~~~~~~ 170 (234)
T PF01637_consen 104 SALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQQNVSIVIT-GSSDSLME 170 (234)
T ss_dssp --HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH----TTEEEEEE-ESSHHHHH
T ss_pred HHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhccccCCceEEEE-CCchHHHH
Confidence 3344444333222345999999999998 6788888888888888888887753 33334433
No 46
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=58.63 E-value=2e+02 Score=28.67 Aligned_cols=165 Identities=15% Similarity=0.170 Sum_probs=81.4
Q ss_pred CccceEEEecCCCCCCchHHHHHHHHHHhhhcCcEEEEeeCCCCCCCCChhHHHHHHHHHHHcCCCCcccHHHHHHHHHh
Q 042861 146 KQLFTGLVLTKNMEFVDDLLTFEELGRHLKSQGCHVANLSSLDFTAKSGIGGCLRSLLRQFLVAPLDAADISILASWYRE 225 (457)
Q Consensus 146 ~~IPTAllltGnin~~dh~~~F~~L~~~L~~~~~~Vv~L~s~dc~~~~~i~~~Lk~ll~qli~~~~~~yDl~~L~~Wy~~ 225 (457)
+.+|.++++.|... ..-..+-..+...+ ++.+..+++.+ . + ...++..+..+...
T Consensus 40 ~~~~~~lll~G~~G-~GKT~la~~l~~~~---~~~~~~i~~~~-~---~-~~~i~~~l~~~~~~---------------- 94 (316)
T PHA02544 40 GRIPNMLLHSPSPG-TGKTTVAKALCNEV---GAEVLFVNGSD-C---R-IDFVRNRLTRFAST---------------- 94 (316)
T ss_pred CCCCeEEEeeCcCC-CCHHHHHHHHHHHh---CccceEeccCc-c---c-HHHHHHHHHHHHHh----------------
Confidence 35788888888222 23223334444433 34556666654 2 2 22333333333221
Q ss_pred hcCCCCCEEEEecCcccc-CchhHHHHHHHHHHhhccCCeEEEEeecCCChhHhhhccHHHHhhcccceeeeCCcchHH-
Q 042861 226 QGNYNNPVVVIVDDIERC-CGSVLSDFILMFSEWVLKIPVILIMGVTTTLDAPRNILLSNVLQCLCPCMFTLGTPSERM- 303 (457)
Q Consensus 226 ~~~~~~~lVvil~D~Esf-d~~VL~DlI~llSs~~~~IP~vLVfGIATs~~~~~~~Lp~s~~slL~~~~F~~~s~~~~l- 303 (457)
......+=||+|+|.+.. .......|..++..+....+|++ +|+. . ..++....++...-.|..++..+..
T Consensus 95 ~~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Il----t~n~--~-~~l~~~l~sR~~~i~~~~p~~~~~~~ 167 (316)
T PHA02544 95 VSLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFII----TANN--K-NGIIEPLRSRCRVIDFGVPTKEEQIE 167 (316)
T ss_pred hcccCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEE----EcCC--h-hhchHHHHhhceEEEeCCCCHHHHHH
Confidence 100123458889999988 44433333333444444444433 2221 1 3556666676665556555554432
Q ss_pred --HHHHHHH---HhcCCCceeeChhhHHHHHHHHHhccCCHHHHHHHHH
Q 042861 304 --DAIIEAV---LVRQCSGFSISHKVAVFMRNYFVRQDGTITSFIRALK 347 (457)
Q Consensus 304 --~~I~e~v---ll~~~~~f~Lg~~v~~~L~d~F~~~d~Sv~~fi~~LK 347 (457)
..+++.. +... ...+.+.++..|.+ ++...+...+..++
T Consensus 168 il~~~~~~~~~~~~~~--~~~i~~~al~~l~~---~~~~d~r~~l~~l~ 211 (316)
T PHA02544 168 MMKQMIVRCKGILEAE--GVEVDMKVLAALVK---KNFPDFRRTINELQ 211 (316)
T ss_pred HHHHHHHHHHHHHHhc--CCCCCHHHHHHHHH---hcCCCHHHHHHHHH
Confidence 2222222 2222 45567777766654 34456666666666
No 47
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=54.67 E-value=3.2e+02 Score=29.79 Aligned_cols=107 Identities=15% Similarity=0.202 Sum_probs=69.4
Q ss_pred CCEEEEecCccccCchhHHHHHHHHHHhhccCCeEEEEeecCCChhHhhhccHHHHhhcccceeeeCCcchHHHHHHHHH
Q 042861 231 NPVVVIVDDIERCCGSVLSDFILMFSEWVLKIPVILIMGVTTTLDAPRNILLSNVLQCLCPCMFTLGTPSERMDAIIEAV 310 (457)
Q Consensus 231 ~~lVvil~D~Esfd~~VL~DlI~llSs~~~~IP~vLVfGIATs~~~~~~~Lp~s~~slL~~~~F~~~s~~~~l~~I~e~v 310 (457)
.+-||++++++.++...+..|+..+...... ++|| +++|.++ .++....++...-.|.-.+.. -+..+++++
T Consensus 117 ~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~--vv~I-lattn~~----kl~~~L~SR~~vv~f~~l~~~-el~~~L~~i 188 (472)
T PRK14962 117 KYKVYIIDEVHMLTKEAFNALLKTLEEPPSH--VVFV-LATTNLE----KVPPTIISRCQVIEFRNISDE-LIIKRLQEV 188 (472)
T ss_pred CeEEEEEEChHHhHHHHHHHHHHHHHhCCCc--EEEE-EEeCChH----hhhHHHhcCcEEEEECCccHH-HHHHHHHHH
Confidence 4569999999999988888887766654332 2333 3444333 566667777654334333333 345555665
Q ss_pred HhcCCCceeeChhhHHHHHHHHHhccCCHHHHHHHHHHHH
Q 042861 311 LVRQCSGFSISHKVAVFMRNYFVRQDGTITSFIRALKIAC 350 (457)
Q Consensus 311 ll~~~~~f~Lg~~v~~~L~d~F~~~d~Sv~~fi~~LK~a~ 350 (457)
.... .+.+.+.++..|.. +.+.++...+..|+.++
T Consensus 189 ~~~e--gi~i~~eal~~Ia~---~s~GdlR~aln~Le~l~ 223 (472)
T PRK14962 189 AEAE--GIEIDREALSFIAK---RASGGLRDALTMLEQVW 223 (472)
T ss_pred HHHc--CCCCCHHHHHHHHH---HhCCCHHHHHHHHHHHH
Confidence 5544 56789998887765 45788888888888655
No 48
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=53.03 E-value=4.4e+02 Score=30.90 Aligned_cols=195 Identities=14% Similarity=0.145 Sum_probs=107.3
Q ss_pred eEEEecCCCCCCchHHHHHHHHHHhhhcCcEEEEeeCCCCCCCCChhHHHHHHHHHHHcCCCC--ccc-HHHHHHHHHhh
Q 042861 150 TGLVLTKNMEFVDDLLTFEELGRHLKSQGCHVANLSSLDFTAKSGIGGCLRSLLRQFLVAPLD--AAD-ISILASWYREQ 226 (457)
Q Consensus 150 TAllltGnin~~dh~~~F~~L~~~L~~~~~~Vv~L~s~dc~~~~~i~~~Lk~ll~qli~~~~~--~yD-l~~L~~Wy~~~ 226 (457)
..++++|- +=+.-..+-..|...+-..+..++.++-.+... +..+.++++.... .|+ -..|......
T Consensus 596 ~~~Lf~Gp-~GvGKt~lA~~La~~l~~~~~~~i~~d~s~~~~--------~~~~~~l~g~~~g~~g~~~~g~l~~~v~~- 665 (852)
T TIGR03346 596 GSFLFLGP-TGVGKTELAKALAEFLFDDEDAMVRIDMSEYME--------KHSVARLIGAPPGYVGYEEGGQLTEAVRR- 665 (852)
T ss_pred eEEEEEcC-CCCCHHHHHHHHHHHhcCCCCcEEEEechhhcc--------cchHHHhcCCCCCccCcccccHHHHHHHc-
Confidence 45777772 223434455667766644434455555444321 2234455554322 232 2334333322
Q ss_pred cCCCCCEEEEecCccccCchhHHHHHHHHHHhh------ccCCeE---EEEeecCCC--h--------------------
Q 042861 227 GNYNNPVVVIVDDIERCCGSVLSDFILMFSEWV------LKIPVI---LIMGVTTTL--D-------------------- 275 (457)
Q Consensus 227 ~~~~~~lVvil~D~Esfd~~VL~DlI~llSs~~------~~IP~v---LVfGIATs~--~-------------------- 275 (457)
.+.-||+|+++|..++.|.+.|..+|..-. .++.|- +| ++|+. +
T Consensus 666 ---~p~~vlllDeieka~~~v~~~Ll~~l~~g~l~d~~g~~vd~rn~iiI--~TSn~g~~~~~~~~~~~~~~~~~~~~~~ 740 (852)
T TIGR03346 666 ---KPYSVVLFDEVEKAHPDVFNVLLQVLDDGRLTDGQGRTVDFRNTVII--MTSNLGSQFIQELAGGDDYEEMREAVME 740 (852)
T ss_pred ---CCCcEEEEeccccCCHHHHHHHHHHHhcCceecCCCeEEecCCcEEE--EeCCcchHhHhhhcccccHHHHHHHHHH
Confidence 345699999999999999999999996542 123333 33 33333 1
Q ss_pred hHhhhccHHHHhhcccceeeeCCcchHHHHHHHHHHhc-------CCCceeeChhhHHHHHHHHHhccCCHHHHHHHHHH
Q 042861 276 APRNILLSNVLQCLCPCMFTLGTPSERMDAIIEAVLVR-------QCSGFSISHKVAVFMRNYFVRQDGTITSFIRALKI 348 (457)
Q Consensus 276 ~~~~~Lp~s~~slL~~~~F~~~s~~~~l~~I~e~vll~-------~~~~f~Lg~~v~~~L~d~F~~~d~Sv~~fi~~LK~ 348 (457)
.+.+.++...+.+|..-..-.+...+.+.+|++..+.. ....+.+++.+..+|.++-+...+....+-+.++=
T Consensus 741 ~~~~~F~pel~~Rid~IivF~PL~~e~l~~I~~l~L~~l~~~l~~~~~~l~i~~~a~~~L~~~~~~~~~gaR~L~~~i~~ 820 (852)
T TIGR03346 741 VLRAHFRPEFLNRIDEIVVFHPLGREQIARIVEIQLGRLRKRLAERKITLELSDAALDFLAEAGYDPVYGARPLKRAIQR 820 (852)
T ss_pred HHHhhcCHHHhcCcCeEEecCCcCHHHHHHHHHHHHHHHHHHHHHCCCeecCCHHHHHHHHHhCCCCCCCchhHHHHHHH
Confidence 13445566666666543333445556677777665542 22357889999988887644344555444444443
Q ss_pred HHHhhhccCccccccc
Q 042861 349 ACSQHFSMEPLSIILK 364 (457)
Q Consensus 349 a~M~HFy~nPLSvL~~ 364 (457)
.+ .+|++-.+.
T Consensus 821 ~i-----~~~l~~~~l 831 (852)
T TIGR03346 821 EI-----ENPLAKKIL 831 (852)
T ss_pred HH-----HHHHHHHHH
Confidence 33 455655443
No 49
>PRK04132 replication factor C small subunit; Provisional
Probab=53.02 E-value=2.1e+02 Score=33.73 Aligned_cols=108 Identities=9% Similarity=0.168 Sum_probs=74.5
Q ss_pred CCEEEEecCccccCchhHHHHHHHHHHhhccCCeEEEEeecCCChhHhhhccHHHHhhcccceeeeCCcc-hHHHHHHHH
Q 042861 231 NPVVVIVDDIERCCGSVLSDFILMFSEWVLKIPVILIMGVTTTLDAPRNILLSNVLQCLCPCMFTLGTPS-ERMDAIIEA 309 (457)
Q Consensus 231 ~~lVvil~D~Esfd~~VL~DlI~llSs~~~~IP~vLVfGIATs~~~~~~~Lp~s~~slL~~~~F~~~s~~-~~l~~I~e~ 309 (457)
+.-|||+++.+.++...-+-|..++-.+-..++|+|+ ++.++ .++....++.. .|.+...+ +-+...++.
T Consensus 630 ~~KVvIIDEaD~Lt~~AQnALLk~lEep~~~~~FILi---~N~~~----kIi~tIrSRC~--~i~F~~ls~~~i~~~L~~ 700 (846)
T PRK04132 630 SFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILS---CNYSS----KIIEPIQSRCA--IFRFRPLRDEDIAKRLRY 700 (846)
T ss_pred CCEEEEEECcccCCHHHHHHHHHHhhCCCCCeEEEEE---eCChh----hCchHHhhhce--EEeCCCCCHHHHHHHHHH
Confidence 3469999999999999999999999998888887777 44433 44455556644 44544443 344444555
Q ss_pred HHhcCCCceeeChhhHHHHHHHHHhccCCHHHHHHHHHHHHHh
Q 042861 310 VLVRQCSGFSISHKVAVFMRNYFVRQDGTITSFIRALKIACSQ 352 (457)
Q Consensus 310 vll~~~~~f~Lg~~v~~~L~d~F~~~d~Sv~~fi~~LK~a~M~ 352 (457)
+.... .+.+.+..+..| -...+.++..-+..|+.+.+.
T Consensus 701 I~~~E--gi~i~~e~L~~I---a~~s~GDlR~AIn~Lq~~~~~ 738 (846)
T PRK04132 701 IAENE--GLELTEEGLQAI---LYIAEGDMRRAINILQAAAAL 738 (846)
T ss_pred HHHhc--CCCCCHHHHHHH---HHHcCCCHHHHHHHHHHHHHh
Confidence 55443 355677755444 568899999999999987753
No 50
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=52.24 E-value=4.5e+02 Score=30.84 Aligned_cols=104 Identities=15% Similarity=0.240 Sum_probs=64.9
Q ss_pred CCEEEEecCccccCchhHHHHHHHHHHhhccCCeEEEEeecCCChhHhhhccHHHHhhcccceeeeCCcchHHHHHHHHH
Q 042861 231 NPVVVIVDDIERCCGSVLSDFILMFSEWVLKIPVILIMGVTTTLDAPRNILLSNVLQCLCPCMFTLGTPSERMDAIIEAV 310 (457)
Q Consensus 231 ~~lVvil~D~Esfd~~VL~DlI~llSs~~~~IP~vLVfGIATs~~~~~~~Lp~s~~slL~~~~F~~~s~~~~l~~I~e~v 310 (457)
+.=||||++.|.++..-.+.|+.+|-+.-.. .+||| ++|.++ + |.....++...-.|...+.. -+...++++
T Consensus 120 ~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~--~~fIl-~tt~~~---k-Ll~TIrSRc~~v~F~~l~~~-~l~~~L~~i 191 (824)
T PRK07764 120 RYKIFIIDEAHMVTPQGFNALLKIVEEPPEH--LKFIF-ATTEPD---K-VIGTIRSRTHHYPFRLVPPE-VMRGYLERI 191 (824)
T ss_pred CceEEEEechhhcCHHHHHHHHHHHhCCCCC--eEEEE-EeCChh---h-hhHHHHhheeEEEeeCCCHH-HHHHHHHHH
Confidence 3457889999999999999888777665443 33444 234444 3 55667777777777766554 344455555
Q ss_pred HhcCCCceeeChhhHHHHHHHHHhccCCHHHHHHHHH
Q 042861 311 LVRQCSGFSISHKVAVFMRNYFVRQDGTITSFIRALK 347 (457)
Q Consensus 311 ll~~~~~f~Lg~~v~~~L~d~F~~~d~Sv~~fi~~LK 347 (457)
+... ...+....+.+|.. ..+.++...+..|+
T Consensus 192 l~~E--Gv~id~eal~lLa~---~sgGdlR~Al~eLE 223 (824)
T PRK07764 192 CAQE--GVPVEPGVLPLVIR---AGGGSVRDSLSVLD 223 (824)
T ss_pred HHHc--CCCCCHHHHHHHHH---HcCCCHHHHHHHHH
Confidence 5544 35567776655533 33556666666554
No 51
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=51.76 E-value=4.1e+02 Score=30.15 Aligned_cols=105 Identities=13% Similarity=0.183 Sum_probs=63.9
Q ss_pred CCEEEEecCccccCchhHHHHHHHHHHhhccCCeEEEEeecCCChhHhhhccHHHHhhcccceeeeCCcc-hHHHHHHHH
Q 042861 231 NPVVVIVDDIERCCGSVLSDFILMFSEWVLKIPVILIMGVTTTLDAPRNILLSNVLQCLCPCMFTLGTPS-ERMDAIIEA 309 (457)
Q Consensus 231 ~~lVvil~D~Esfd~~VL~DlI~llSs~~~~IP~vLVfGIATs~~~~~~~Lp~s~~slL~~~~F~~~s~~-~~l~~I~e~ 309 (457)
+.-|+||++.+.++....+.|+..+-+.-...- ||| ++|.+ ++ ++....++.. .|++..-+ +-+...++.
T Consensus 124 ~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~--fIL-~Ttd~---~k-il~TIlSRc~--~~~f~~Ls~eei~~~L~~ 194 (618)
T PRK14951 124 RFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLK--FVL-ATTDP---QK-VPVTVLSRCL--QFNLRPMAPETVLEHLTQ 194 (618)
T ss_pred CceEEEEEChhhCCHHHHHHHHHhcccCCCCeE--EEE-EECCc---hh-hhHHHHHhce--eeecCCCCHHHHHHHHHH
Confidence 356899999999999998888866555333222 332 23332 23 4555666544 45554432 344455555
Q ss_pred HHhcCCCceeeChhhHHHHHHHHHhccCCHHHHHHHHHHH
Q 042861 310 VLVRQCSGFSISHKVAVFMRNYFVRQDGTITSFIRALKIA 349 (457)
Q Consensus 310 vll~~~~~f~Lg~~v~~~L~d~F~~~d~Sv~~fi~~LK~a 349 (457)
++... .+.+.+..+.+|.. ..+.|+...++.+.-+
T Consensus 195 i~~~e--gi~ie~~AL~~La~---~s~GslR~al~lLdq~ 229 (618)
T PRK14951 195 VLAAE--NVPAEPQALRLLAR---AARGSMRDALSLTDQA 229 (618)
T ss_pred HHHHc--CCCCCHHHHHHHHH---HcCCCHHHHHHHHHHH
Confidence 55554 46678887776654 5668888888877533
No 52
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=51.60 E-value=1.4e+02 Score=29.21 Aligned_cols=115 Identities=11% Similarity=0.170 Sum_probs=69.4
Q ss_pred EEEEecCccccC--------chhHHHHHHHHHHhhccCCeEEEE-eecCCChhHhhhccHHHHhhcccceeeeCCcc-hH
Q 042861 233 VVVIVDDIERCC--------GSVLSDFILMFSEWVLKIPVILIM-GVTTTLDAPRNILLSNVLQCLCPCMFTLGTPS-ER 302 (457)
Q Consensus 233 lVvil~D~Esfd--------~~VL~DlI~llSs~~~~IP~vLVf-GIATs~~~~~~~Lp~s~~slL~~~~F~~~s~~-~~ 302 (457)
-||+|+|++.+. ...+..|+..+..+... +++|+ |..+..+.+. .++....+++ ...+.+++-+ +-
T Consensus 107 ~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~--~~vila~~~~~~~~~~-~~~p~L~sRf-~~~i~f~~~~~~e 182 (261)
T TIGR02881 107 GVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNE--FVLILAGYSDEMDYFL-SLNPGLRSRF-PISIDFPDYTVEE 182 (261)
T ss_pred CEEEEechhhhccCCccchHHHHHHHHHHHHhccCCC--EEEEecCCcchhHHHH-hcChHHHhcc-ceEEEECCCCHHH
Confidence 389999998864 34666666666555433 33332 2222222222 3556677776 3345555443 45
Q ss_pred HHHHHHHHHhcCCCceeeChhhHHHHHHHHHh-------ccCCHHHHHHHHHHHHHhh
Q 042861 303 MDAIIEAVLVRQCSGFSISHKVAVFMRNYFVR-------QDGTITSFIRALKIACSQH 353 (457)
Q Consensus 303 l~~I~e~vll~~~~~f~Lg~~v~~~L~d~F~~-------~d~Sv~~fi~~LK~a~M~H 353 (457)
+.+|++..+-.. .+.++..++.+|.+.+.. ...+.......+.-|++.+
T Consensus 183 l~~Il~~~~~~~--~~~l~~~a~~~l~~~~~~~~~~~~~~~gn~R~~~n~~e~a~~~~ 238 (261)
T TIGR02881 183 LMEIAERMVKER--EYKLTEEAKWKLREHLYKVDQLSSREFSNARYVRNIIEKAIRRQ 238 (261)
T ss_pred HHHHHHHHHHHc--CCccCHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHH
Confidence 566777766543 678999999988876542 2356777777777777655
No 53
>PF12780 AAA_8: P-loop containing dynein motor region D4; InterPro: IPR024317 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four (D1 - D4) correspond to the ATP binding sites with P-loop signatures described previously, and two (D5, D6) are modules in which the P loop has been lost in evolution. This particular entry represents the D4 ATP-binding domain of the motor [].; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=49.64 E-value=1.7e+02 Score=29.31 Aligned_cols=194 Identities=14% Similarity=0.133 Sum_probs=95.3
Q ss_pred CCCchHHHHHHHHHHhh-------hcCcEEEEeeCCCCCCCCChhHHHHHHHHHHHcCC------CCcccH----HHHHH
Q 042861 159 EFVDDLLTFEELGRHLK-------SQGCHVANLSSLDFTAKSGIGGCLRSLLRQFLVAP------LDAADI----SILAS 221 (457)
Q Consensus 159 n~~dh~~~F~~L~~~L~-------~~~~~Vv~L~s~dc~~~~~i~~~Lk~ll~qli~~~------~~~yDl----~~L~~ 221 (457)
|..-++.+|++.-+++- +.+.|...+-..-+ | +..+-++..-+.+.. ...|++ +.|..
T Consensus 5 n~~m~lVlf~~ai~hi~ri~RvL~~~~Gh~LLvG~~Gs----G-r~sl~rLaa~i~~~~~~~i~~~~~y~~~~f~~dLk~ 79 (268)
T PF12780_consen 5 NTKMNLVLFDEAIEHIARISRVLSQPRGHALLVGVGGS----G-RQSLARLAAFICGYEVFQIEITKGYSIKDFKEDLKK 79 (268)
T ss_dssp ---------HHHHHHHHHHHHHHCSTTEEEEEECTTTS----C-HHHHHHHHHHHTTEEEE-TTTSTTTHHHHHHHHHHH
T ss_pred ccccceeeHHHHHHHHHHHHHHHcCCCCCeEEecCCCc----c-HHHHHHHHHHHhccceEEEEeeCCcCHHHHHHHHHH
Confidence 34445667777777652 23457766655443 2 223333333222211 235654 35666
Q ss_pred HHHhhcCCCCCEEEEecCccccCchhHHHHHHHHHH--------------------------------------hh--cc
Q 042861 222 WYREQGNYNNPVVVIVDDIERCCGSVLSDFILMFSE--------------------------------------WV--LK 261 (457)
Q Consensus 222 Wy~~~~~~~~~lVvil~D~Esfd~~VL~DlI~llSs--------------------------------------~~--~~ 261 (457)
.+...+-.+.|+|++++|..--+...|.|+=.||++ +. -+
T Consensus 80 ~~~~ag~~~~~~vfll~d~qi~~~~fLe~in~LL~sGeip~LF~~eE~~~i~~~l~~~~~~~~~~~~~~~~~~~F~~rvr 159 (268)
T PF12780_consen 80 ALQKAGIKGKPTVFLLTDSQIVDESFLEDINSLLSSGEIPNLFTKEELDNIISSLREEAKAEGISDSRESLYEFFIERVR 159 (268)
T ss_dssp HHHHHHCS-S-EEEEEECCCSSSCHHHHHHHHHHHCSS-TTTS-TCHHHHHHHHHHHHHHHCT--SSHHHHHHHHHHHHC
T ss_pred HHHHHhccCCCeEEEecCcccchHhHHHHHHHHHhCCCCCCCccHHHHHHHHHHhHHHHHHcCCCCchHHHHHHHHHHHH
Confidence 676666678899999999998888888888888865 11 13
Q ss_pred CCeEEEEeecCCChhHhhhc--cHHHHhhcccceeeeCCcchHHHHHHHHHHhcCCCceeeChhhHHHHHHHHHhccCCH
Q 042861 262 IPVILIMGVTTTLDAPRNIL--LSNVLQCLCPCMFTLGTPSERMDAIIEAVLVRQCSGFSISHKVAVFMRNYFVRQDGTI 339 (457)
Q Consensus 262 IP~vLVfGIATs~~~~~~~L--p~s~~slL~~~~F~~~s~~~~l~~I~e~vll~~~~~f~Lg~~v~~~L~d~F~~~d~Sv 339 (457)
=.+.+|+.++...+.++.++ -.+.+++-.+.-|+-++. +.|..|-+..+.+.+ .++..+-+-+.+.+..-+.|+
T Consensus 160 ~nLHivl~~sp~~~~~r~~~~~fPaL~~~ctIdW~~~W~~-eaL~~Va~~~l~~~~---~~~~~~~~~l~~~~~~iH~sv 235 (268)
T PF12780_consen 160 KNLHIVLCMSPVGPNFRDRCRSFPALVNCCTIDWFDPWPE-EALLSVANKFLSDIE---LLSEELKKSLAEIMVFIHQSV 235 (268)
T ss_dssp CCEEEEEEESTTTTCCCHHHHHHCCHHHHSEEEEEES--H-HHHHHHHHHHCCHHH---TSS--HHHHHHHHHHHHHHHH
T ss_pred hheeEEEEECCCCchHHHHHHhCcchhcccEEEeCCcCCH-HHHHHHHHHHHHhhc---ccchhHHHHHHHHHHHHhccc
Confidence 34566666666666666544 223445555666776654 455556666554432 123444445555555555555
Q ss_pred HHHHHHHHHHHHhhhccCcccc
Q 042861 340 TSFIRALKIACSQHFSMEPLSI 361 (457)
Q Consensus 340 ~~fi~~LK~a~M~HFy~nPLSv 361 (457)
....+...--.=.|.|.-|-|+
T Consensus 236 ~~~s~~y~~~~~r~~yvTP~sy 257 (268)
T PF12780_consen 236 EEISRKYLQELRRYNYVTPKSY 257 (268)
T ss_dssp HHHHHHHHHHCS------HHHH
T ss_pred hHhHHHHHHHcCCcceECcHHH
Confidence 5443332111124455555444
No 54
>PRK10865 protein disaggregation chaperone; Provisional
Probab=48.23 E-value=5.2e+02 Score=30.39 Aligned_cols=194 Identities=12% Similarity=0.137 Sum_probs=103.3
Q ss_pred EEEecCCCCCCchHHHHHHHHHHhhhcCcEEEEeeCCCCCCCCChhHHHHHHHHHHHcCCCC--ccc-HHHHHHHHHhhc
Q 042861 151 GLVLTKNMEFVDDLLTFEELGRHLKSQGCHVANLSSLDFTAKSGIGGCLRSLLRQFLVAPLD--AAD-ISILASWYREQG 227 (457)
Q Consensus 151 AllltGnin~~dh~~~F~~L~~~L~~~~~~Vv~L~s~dc~~~~~i~~~Lk~ll~qli~~~~~--~yD-l~~L~~Wy~~~~ 227 (457)
.++++|. +=+.--.+-..|.+.+-..+..++.+.-.+.. -+..+..+++.... .|+ -..|.....
T Consensus 600 ~~Lf~Gp-~G~GKT~lA~aLa~~l~~~~~~~i~id~se~~--------~~~~~~~LiG~~pgy~g~~~~g~l~~~v~--- 667 (857)
T PRK10865 600 SFLFLGP-TGVGKTELCKALANFMFDSDDAMVRIDMSEFM--------EKHSVSRLVGAPPGYVGYEEGGYLTEAVR--- 667 (857)
T ss_pred eEEEECC-CCCCHHHHHHHHHHHhhcCCCcEEEEEhHHhh--------hhhhHHHHhCCCCcccccchhHHHHHHHH---
Confidence 5677772 22344455577777664333334444433321 12335556654322 232 223333322
Q ss_pred CCCCCEEEEecCccccCchhHHHHHHHHHHhh------ccCCeE-EEEeecCCC--h--------------------hHh
Q 042861 228 NYNNPVVVIVDDIERCCGSVLSDFILMFSEWV------LKIPVI-LIMGVTTTL--D--------------------APR 278 (457)
Q Consensus 228 ~~~~~lVvil~D~Esfd~~VL~DlI~llSs~~------~~IP~v-LVfGIATs~--~--------------------~~~ 278 (457)
..+.-||+|+|+|..++.+.+-|..++..-. .++-|- -|+-++|+. + ...
T Consensus 668 -~~p~~vLllDEieka~~~v~~~Ll~ile~g~l~d~~gr~vd~rn~iiI~TSN~g~~~~~~~~~~~~~~~~~~~~~~~~~ 746 (857)
T PRK10865 668 -RRPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNLGSDLIQERFGELDYAHMKELVLGVVS 746 (857)
T ss_pred -hCCCCeEEEeehhhCCHHHHHHHHHHHhhCceecCCceEEeecccEEEEeCCcchHHHHHhccccchHHHHHHHHHHHc
Confidence 2344699999999999999999999996532 123333 122234443 2 223
Q ss_pred hhccHHHHhhcc-cceeeeCCcchHHHHHHHHHHhcC-------CCceeeChhhHHHHHHHHHhccCCHHHHHHHHHHHH
Q 042861 279 NILLSNVLQCLC-PCMFTLGTPSERMDAIIEAVLVRQ-------CSGFSISHKVAVFMRNYFVRQDGTITSFIRALKIAC 350 (457)
Q Consensus 279 ~~Lp~s~~slL~-~~~F~~~s~~~~l~~I~e~vll~~-------~~~f~Lg~~v~~~L~d~F~~~d~Sv~~fi~~LK~a~ 350 (457)
+.+....+.+|. .-.|.- -..+.+..|++..+..- ...+.+++.++.+|.++=....+....+-+.|+--+
T Consensus 747 ~~f~PELlnRld~iivF~P-L~~edl~~Iv~~~L~~l~~rl~~~gi~l~is~~al~~L~~~gy~~~~GARpL~r~I~~~i 825 (857)
T PRK10865 747 HNFRPEFINRIDEVVVFHP-LGEQHIASIAQIQLQRLYKRLEERGYEIHISDEALKLLSENGYDPVYGARPLKRAIQQQI 825 (857)
T ss_pred ccccHHHHHhCCeeEecCC-CCHHHHHHHHHHHHHHHHHHHHhCCCcCcCCHHHHHHHHHcCCCccCChHHHHHHHHHHH
Confidence 345566677773 333433 33345666666555431 345778999988887654444445444444444333
Q ss_pred HhhhccCcccccc
Q 042861 351 SQHFSMEPLSIIL 363 (457)
Q Consensus 351 M~HFy~nPLSvL~ 363 (457)
.+|||-.+
T Consensus 826 -----~~~la~~i 833 (857)
T PRK10865 826 -----ENPLAQQI 833 (857)
T ss_pred -----HHHHHHHH
Confidence 34555433
No 55
>PF05729 NACHT: NACHT domain
Probab=47.25 E-value=1.7e+02 Score=25.34 Aligned_cols=94 Identities=17% Similarity=0.149 Sum_probs=48.9
Q ss_pred chHHHHHHHHHHhhhcC------cEEEEeeCCCCCCCCChhHHHHHHHHHHHcCCCCcccHHHHHHHHHhhcCCCCCEEE
Q 042861 162 DDLLTFEELGRHLKSQG------CHVANLSSLDFTAKSGIGGCLRSLLRQFLVAPLDAADISILASWYREQGNYNNPVVV 235 (457)
Q Consensus 162 dh~~~F~~L~~~L~~~~------~~Vv~L~s~dc~~~~~i~~~Lk~ll~qli~~~~~~yDl~~L~~Wy~~~~~~~~~lVv 235 (457)
.-..+...+...+.... ++++-+..++....... ..+...+.+-.... ..+.-+.+..+. . ..++++|
T Consensus 12 GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~l~~~~~~~-~~~~~~~~~~~~-~---~~~~~ll 85 (166)
T PF05729_consen 12 GKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNS-RSLADLLFDQLPES-IAPIEELLQELL-E---KNKRVLL 85 (166)
T ss_pred ChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhcccc-chHHHHHHHhhccc-hhhhHHHHHHHH-H---cCCceEE
Confidence 44566788888876532 35666666666531111 13333333222211 111111222222 2 2479999
Q ss_pred EecCccccCchhH----HHHHHHHHHhhcc
Q 042861 236 IVDDIERCCGSVL----SDFILMFSEWVLK 261 (457)
Q Consensus 236 il~D~Esfd~~VL----~DlI~llSs~~~~ 261 (457)
+|..+|-+....= +.+..++.+|...
T Consensus 86 ilDglDE~~~~~~~~~~~~~~~~l~~l~~~ 115 (166)
T PF05729_consen 86 ILDGLDELEEQDQSQERQRLLDLLSQLLPQ 115 (166)
T ss_pred EEechHhcccchhhhHHHHHHHHHHHHhhh
Confidence 9999998887432 2455556666655
No 56
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=46.53 E-value=2.8e+02 Score=26.72 Aligned_cols=193 Identities=18% Similarity=0.112 Sum_probs=91.1
Q ss_pred EEEecCCCCCCchHHHHHHHHHHhhhcCcEEEEeeCCCCCCCCChhHHHHHHHHHHHcCCCCcc----cHHHHHHHHHhh
Q 042861 151 GLVLTKNMEFVDDLLTFEELGRHLKSQGCHVANLSSLDFTAKSGIGGCLRSLLRQFLVAPLDAA----DISILASWYREQ 226 (457)
Q Consensus 151 AllltGnin~~dh~~~F~~L~~~L~~~~~~Vv~L~s~dc~~~~~i~~~Lk~ll~qli~~~~~~y----Dl~~L~~Wy~~~ 226 (457)
.++++| -+=..-..+...+...+......++.+-...+ +....++.+..++ +...... -+..|..|....
T Consensus 45 ~~~l~G-~~G~GKTtl~~~l~~~l~~~~~~~~~~~~~~~----~~~~~l~~i~~~l-G~~~~~~~~~~~~~~l~~~l~~~ 118 (269)
T TIGR03015 45 FILITG-EVGAGKTTLIRNLLKRLDQERVVAAKLVNTRV----DAEDLLRMVAADF-GLETEGRDKAALLRELEDFLIEQ 118 (269)
T ss_pred EEEEEc-CCCCCHHHHHHHHHHhcCCCCeEEeeeeCCCC----CHHHHHHHHHHHc-CCCCCCCCHHHHHHHHHHHHHHH
Confidence 355666 22245556677777776533222222222222 3444555555444 2222222 245666665443
Q ss_pred cCCCCCEEEEecCccccCchhHHHHHHHHHHhhc-cCCeEEEEeecCCChhHhhhccHHHHhhcc---cceeeeCCcc-h
Q 042861 227 GNYNNPVVVIVDDIERCCGSVLSDFILMFSEWVL-KIPVILIMGVTTTLDAPRNILLSNVLQCLC---PCMFTLGTPS-E 301 (457)
Q Consensus 227 ~~~~~~lVvil~D~Esfd~~VL~DlI~llSs~~~-~IP~vLVfGIATs~~~~~~~Lp~s~~slL~---~~~F~~~s~~-~ 301 (457)
...+.+.||+++|.+..++..+..+- .++.+.. .-+.+.|+-++ .++ +...|.......+. ...+.++.-+ +
T Consensus 119 ~~~~~~~vliiDe~~~l~~~~~~~l~-~l~~~~~~~~~~~~vvl~g-~~~-~~~~l~~~~~~~l~~r~~~~~~l~~l~~~ 195 (269)
T TIGR03015 119 FAAGKRALLVVDEAQNLTPELLEELR-MLSNFQTDNAKLLQIFLVG-QPE-FRETLQSPQLQQLRQRIIASCHLGPLDRE 195 (269)
T ss_pred HhCCCCeEEEEECcccCCHHHHHHHH-HHhCcccCCCCeEEEEEcC-CHH-HHHHHcCchhHHHHhheeeeeeCCCCCHH
Confidence 33456789999999999988877664 4454432 22322222222 323 34444221111122 1223333332 3
Q ss_pred HHHHHHHHHHhcC--CCceeeChhhHHHHHHHHHhccCCHHHHHHHHHHHHHhhhc
Q 042861 302 RMDAIIEAVLVRQ--CSGFSISHKVAVFMRNYFVRQDGTITSFIRALKIACSQHFS 355 (457)
Q Consensus 302 ~l~~I~e~vll~~--~~~f~Lg~~v~~~L~d~F~~~d~Sv~~fi~~LK~a~M~HFy 355 (457)
-+..++...+... +....+++..++.|.+ ......-..-.....+++..+.
T Consensus 196 e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~---~s~G~p~~i~~l~~~~~~~a~~ 248 (269)
T TIGR03015 196 ETREYIEHRLERAGNRDAPVFSEGAFDAIHR---FSRGIPRLINILCDRLLLSAFL 248 (269)
T ss_pred HHHHHHHHHHHHcCCCCCCCcCHHHHHHHHH---HcCCcccHHHHHHHHHHHHHHH
Confidence 3444444444332 1234578877766643 4444444444444455544443
No 57
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=44.75 E-value=2.8e+02 Score=27.59 Aligned_cols=121 Identities=12% Similarity=0.185 Sum_probs=70.1
Q ss_pred HHHHHHHHHhhcC-CCCCEEEEecCccccCchhHHHHHHHHHHhhccCCeEEEEeecCCChhHhhhccHHHHhhccccee
Q 042861 216 ISILASWYREQGN-YNNPVVVIVDDIERCCGSVLSDFILMFSEWVLKIPVILIMGVTTTLDAPRNILLSNVLQCLCPCMF 294 (457)
Q Consensus 216 l~~L~~Wy~~~~~-~~~~lVvil~D~Esfd~~VL~DlI~llSs~~~~IP~vLVfGIATs~~~~~~~Lp~s~~slL~~~~F 294 (457)
+..+..|+..... ...+-||+++|.+.++....+.|..++........ +|+ +++... .+.....++.. .+
T Consensus 109 ~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~--~Il-~~~~~~----~~~~~L~sr~~--~v 179 (337)
T PRK12402 109 FKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCR--FII-ATRQPS----KLIPPIRSRCL--PL 179 (337)
T ss_pred HHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCe--EEE-EeCChh----hCchhhcCCce--EE
Confidence 3444445543321 12345899999999998877777766665544433 343 222222 22223333322 34
Q ss_pred eeCCcc-hHHHHHHHHHHhcCCCceeeChhhHHHHHHHHHhccCCHHHHHHHHHHHH
Q 042861 295 TLGTPS-ERMDAIIEAVLVRQCSGFSISHKVAVFMRNYFVRQDGTITSFIRALKIAC 350 (457)
Q Consensus 295 ~~~s~~-~~l~~I~e~vll~~~~~f~Lg~~v~~~L~d~F~~~d~Sv~~fi~~LK~a~ 350 (457)
.+.... +-+..+++..+... .+.+.+.+++.|..+. ..++...+..|+.+.
T Consensus 180 ~~~~~~~~~~~~~l~~~~~~~--~~~~~~~al~~l~~~~---~gdlr~l~~~l~~~~ 231 (337)
T PRK12402 180 FFRAPTDDELVDVLESIAEAE--GVDYDDDGLELIAYYA---GGDLRKAILTLQTAA 231 (337)
T ss_pred EecCCCHHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHc---CCCHHHHHHHHHHHH
Confidence 433332 44566666665554 4568999998887654 788888888887544
No 58
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=44.05 E-value=1.7e+02 Score=26.61 Aligned_cols=53 Identities=15% Similarity=0.175 Sum_probs=36.2
Q ss_pred cHHHHHHHHHhhcCCCCCEEEEecCccccCchhHHHHHHHHHHhhccCCeEEE
Q 042861 215 DISILASWYREQGNYNNPVVVIVDDIERCCGSVLSDFILMFSEWVLKIPVILI 267 (457)
Q Consensus 215 Dl~~L~~Wy~~~~~~~~~lVvil~D~Esfd~~VL~DlI~llSs~~~~IP~vLV 267 (457)
++..+..|..........=|+||+|.|..+...-+-|+..|-+.-...=|+|+
T Consensus 86 ~ir~i~~~~~~~~~~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL~ 138 (162)
T PF13177_consen 86 QIREIIEFLSLSPSEGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFILI 138 (162)
T ss_dssp HHHHHHHHCTSS-TTSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEEE
T ss_pred HHHHHHHHHHHHHhcCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEEE
Confidence 34444445433222345679999999999999999999999888766555544
No 59
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=43.65 E-value=3.9e+02 Score=29.48 Aligned_cols=211 Identities=12% Similarity=0.208 Sum_probs=113.6
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHH-----HHHHHHhh-------HHHHHHHHHHHhhhcccccccccchhhhccccCccc
Q 042861 73 GDEGYGNLRMDAFEVVWSKIESTI-----KDVLRDIN-------ANVFNEIHQWVRDSFSTIRSFGMLTFREATQAFPIV 140 (457)
Q Consensus 73 e~~~~~~~R~~~y~~~W~~~~~~I-----q~il~~~n-------~~v~~~I~~fI~~~~~~~~s~~~p~~~~a~~~~~~~ 140 (457)
+++.....|...|.+-|......+ +.++...- ..=++.+-.|+++.-..
T Consensus 112 ~~~~~~p~r~~s~~~~~~p~~ke~~~~~~~~l~~t~~p~~l~gRe~e~~~v~~F~~~hle~------------------- 172 (529)
T KOG2227|consen 112 DPEGSLPARTASYETPMNPSAKEISEQRSESLLNTAPPGTLKGRELEMDIVREFFSLHLEL------------------- 172 (529)
T ss_pred cccccCchhhcCcccCCCcccHHHHHHHHHHHHhcCCCCCccchHHHHHHHHHHHHhhhhc-------------------
Confidence 334555667777777776554443 22222211 22356677777765321
Q ss_pred cccccCccceEEEecCCCCCCchHHHHHHHHHHhhhc--CcEEEEeeCCCCCCCCChhHHHHHHHHHHHcCC-CCcccHH
Q 042861 141 TDASSKQLFTGLVLTKNMEFVDDLLTFEELGRHLKSQ--GCHVANLSSLDFTAKSGIGGCLRSLLRQFLVAP-LDAADIS 217 (457)
Q Consensus 141 ~~~~~~~IPTAllltGnin~~dh~~~F~~L~~~L~~~--~~~Vv~L~s~dc~~~~~i~~~Lk~ll~qli~~~-~~~yDl~ 217 (457)
+=+-++-+.|--+ ++-......+-..+... ++.+|.++..... .....++.+...++... ....+|+
T Consensus 173 ------~t~gSlYVsG~PG-tgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~---~~~aiF~kI~~~~~q~~~s~~~~~~ 242 (529)
T KOG2227|consen 173 ------NTSGSLYVSGQPG-TGKTALLSRVLDSLSKSSKSPVTVYINCTSLT---EASAIFKKIFSSLLQDLVSPGTGMQ 242 (529)
T ss_pred ------ccCcceEeeCCCC-cchHHHHHHHHHhhhhhcccceeEEEeecccc---chHHHHHHHHHHHHHHhcCCchhHH
Confidence 1222444455111 22223444444444433 2445655544322 45567777777774432 2334466
Q ss_pred HHHHHHHhhcCCCCCEEEEecCccccCchhHHHHHHHHHHhhccCCe--EEEEeecCCChhHhhhccHHHH-hhccccee
Q 042861 218 ILASWYREQGNYNNPVVVIVDDIERCCGSVLSDFILMFSEWVLKIPV--ILIMGVTTTLDAPRNILLSNVL-QCLCPCMF 294 (457)
Q Consensus 218 ~L~~Wy~~~~~~~~~lVvil~D~Esfd~~VL~DlI~llSs~~~~IP~--vLVfGIATs~~~~~~~Lp~s~~-slL~~~~F 294 (457)
.++.+-++..+...++|+++...+.+...=-+-+ ..+=.| +.+|- .++.|||-+.+.=.+.||+=-. .-+.+...
T Consensus 243 ~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vL-y~lFew-p~lp~sr~iLiGiANslDlTdR~LprL~~~~~~~P~~l 320 (529)
T KOG2227|consen 243 HLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVL-YTLFEW-PKLPNSRIILIGIANSLDLTDRFLPRLNLDLTIKPKLL 320 (529)
T ss_pred HHHHHHHHHhcccceEEEEechhhHHhhccccee-eeehhc-ccCCcceeeeeeehhhhhHHHHHhhhhhhccCCCCcee
Confidence 6666655555555799999999988764322222 222233 34443 3778999999999999998766 45667764
Q ss_pred eeCCcc-hHHHHHHHHHHhcC
Q 042861 295 TLGTPS-ERMDAIIEAVLVRQ 314 (457)
Q Consensus 295 ~~~s~~-~~l~~I~e~vll~~ 314 (457)
..++=+ +-+..|++.=+...
T Consensus 321 ~F~PYTk~qI~~Il~~rl~~~ 341 (529)
T KOG2227|consen 321 VFPPYTKDQIVEILQQRLSEE 341 (529)
T ss_pred eecCCCHHHHHHHHHHHHhcc
Confidence 444433 44444544434333
No 60
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=43.21 E-value=1.9e+02 Score=28.65 Aligned_cols=94 Identities=18% Similarity=0.210 Sum_probs=57.7
Q ss_pred CCEEEEecCccccCchhHHHHHHHHHHhhc---------------cCCeEEEEeecCCChhHhhhccHHHHhhccc-cee
Q 042861 231 NPVVVIVDDIERCCGSVLSDFILMFSEWVL---------------KIPVILIMGVTTTLDAPRNILLSNVLQCLCP-CMF 294 (457)
Q Consensus 231 ~~lVvil~D~Esfd~~VL~DlI~llSs~~~---------------~IP~vLVfGIATs~~~~~~~Lp~s~~slL~~-~~F 294 (457)
.+-|++|+|++.+++.....|..++..+.. .+|=+.++|..|-. ..++....+++.. -.|
T Consensus 81 ~~~vl~iDEi~~l~~~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~li~~t~~~----~~l~~~l~sR~~~~~~l 156 (305)
T TIGR00635 81 EGDVLFIDEIHRLSPAVEELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTLVGATTRA----GMLTSPLRDRFGIILRL 156 (305)
T ss_pred cCCEEEEehHhhhCHHHHHHhhHHHhhhheeeeeccCccccceeecCCCeEEEEecCCc----cccCHHHHhhcceEEEe
Confidence 356999999999999988777777765552 23334445544443 3455556666632 134
Q ss_pred eeCCcchHHHHHHHHHHhcCCCceeeChhhHHHHHHH
Q 042861 295 TLGTPSERMDAIIEAVLVRQCSGFSISHKVAVFMRNY 331 (457)
Q Consensus 295 ~~~s~~~~l~~I~e~vll~~~~~f~Lg~~v~~~L~d~ 331 (457)
...+. +-+.+++++..... ...+.+.++.+|...
T Consensus 157 ~~l~~-~e~~~il~~~~~~~--~~~~~~~al~~ia~~ 190 (305)
T TIGR00635 157 EFYTV-EELAEIVSRSAGLL--NVEIEPEAALEIARR 190 (305)
T ss_pred CCCCH-HHHHHHHHHHHHHh--CCCcCHHHHHHHHHH
Confidence 43333 34556666655543 567889988777654
No 61
>PF01337 Barstar: Barstar (barnase inhibitor); InterPro: IPR000468 Barstar is a small single chain protein. Barnase is the extracellular ribonuclease IPR001887 from INTERPRO of Bacillus amyloliquefaciens, and barstar its specific intracellular inhibitor [, ]. Expression of barstar is necessary to counter the lethal effect of expressed active barnase. The structure of the barnase-barstar complex is known [].; PDB: 2CX6_A 1B2U_F 1A19_A 1X1U_F 1B27_E 1X1W_F 1BGS_E 1X1Y_D 1B3S_D 1B2S_D ....
Probab=42.60 E-value=84 Score=25.66 Aligned_cols=75 Identities=7% Similarity=0.068 Sum_probs=44.1
Q ss_pred EeeCCCCCCCCChhHHHHHHHHHHHcCCCCcccHHHHHHHHHhh-cCCCCCEEEEecCccccCc---hhHHHHHHHHHHh
Q 042861 183 NLSSLDFTAKSGIGGCLRSLLRQFLVAPLDAADISILASWYREQ-GNYNNPVVVIVDDIERCCG---SVLSDFILMFSEW 258 (457)
Q Consensus 183 ~L~s~dc~~~~~i~~~Lk~ll~qli~~~~~~yDl~~L~~Wy~~~-~~~~~~lVvil~D~Esfd~---~VL~DlI~llSs~ 258 (457)
++.-+.+. +....++.+-++|--..-=...+++|.+..... .....|++|++++.+.+.. .-...++.+|..+
T Consensus 2 ~idg~~i~---~~~~~~~~l~~~l~fP~yfG~NlDAl~D~L~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~vl~~~ 78 (90)
T PF01337_consen 2 TIDGRKIR---DKEDFYDALAEALDFPDYFGRNLDALWDCLTDLSWIPEEPIVIIWENADKLKKRLPEDFEILLEVLEDA 78 (90)
T ss_dssp EEECCC-S---SHHHHHHHHHHHTT--TTSSSSHHHHHHHHHCT---S-SSEEEEEETHHHHHHTTTCHCHHHHHHHHHH
T ss_pred EEeCCCCC---CHHHHHHHHHHHcCCCchhcCCHHHHHHHhcCcccCCCCCEEEEEcCcHHHHHHhHHHHHHHHHHHHHH
Confidence 34444444 344555555555511111134688888877654 1235799999999998866 6677778888766
Q ss_pred hc
Q 042861 259 VL 260 (457)
Q Consensus 259 ~~ 260 (457)
..
T Consensus 79 ~~ 80 (90)
T PF01337_consen 79 AE 80 (90)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 62
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=42.15 E-value=4.7e+02 Score=28.17 Aligned_cols=177 Identities=12% Similarity=0.155 Sum_probs=102.2
Q ss_pred EEEecCCCCCCchHHHHHHHHHHhhhc--CcEEEEeeCCCCCCCCChhHHHHHHHHHHHcCCCCcccHHHHHHHHHhhcC
Q 042861 151 GLVLTKNMEFVDDLLTFEELGRHLKSQ--GCHVANLSSLDFTAKSGIGGCLRSLLRQFLVAPLDAADISILASWYREQGN 228 (457)
Q Consensus 151 AllltGnin~~dh~~~F~~L~~~L~~~--~~~Vv~L~s~dc~~~~~i~~~Lk~ll~qli~~~~~~yDl~~L~~Wy~~~~~ 228 (457)
.+++.|+.. .+--.+...+...+... +..|+-+++.++. ..++..+-.. .+.+..++....
T Consensus 143 pl~i~G~~G-~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~---------~~~~~~l~~~------~~~~~~~~~~~~- 205 (450)
T PRK14087 143 PLFIYGESG-MGKTHLLKAAKNYIESNFSDLKVSYMSGDEFA---------RKAVDILQKT------HKEIEQFKNEIC- 205 (450)
T ss_pred ceEEECCCC-CcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHH---------HHHHHHHHHh------hhHHHHHHHHhc-
Confidence 466667443 33344567777777542 4577767775442 3333322110 022333333322
Q ss_pred CCCCEEEEecCccccC--chhHHHHHHHHHHhhccCCeEEEEeecCCChhHhhhccHHHHhhc-ccceeeeCCcc-hHHH
Q 042861 229 YNNPVVVIVDDIERCC--GSVLSDFILMFSEWVLKIPVILIMGVTTTLDAPRNILLSNVLQCL-CPCMFTLGTPS-ERMD 304 (457)
Q Consensus 229 ~~~~lVvil~D~Esfd--~~VL~DlI~llSs~~~~IP~vLVfGIATs~~~~~~~Lp~s~~slL-~~~~F~~~s~~-~~l~ 304 (457)
..-|++++|+..+. ......|..++.....+=.- +|+.=..+++.+. .|.....+++ .|=.+++.++. +-..
T Consensus 206 --~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~-iIltsd~~P~~l~-~l~~rL~SR~~~Gl~~~L~~pd~e~r~ 281 (450)
T PRK14087 206 --QNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQ-LFFSSDKSPELLN-GFDNRLITRFNMGLSIAIQKLDNKTAT 281 (450)
T ss_pred --cCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCc-EEEECCCCHHHHh-hccHHHHHHHhCCceeccCCcCHHHHH
Confidence 23488999998876 45778888888776654332 3333234455554 4545555555 46667777766 6666
Q ss_pred HHHHHHHhcCCCceeeChhhHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 042861 305 AIIEAVLVRQCSGFSISHKVAVFMRNYFVRQDGTITSFIRALKIACS 351 (457)
Q Consensus 305 ~I~e~vll~~~~~f~Lg~~v~~~L~d~F~~~d~Sv~~fi~~LK~a~M 351 (457)
+++++.+......+.+...++.+|.+.+ +.++..+..+|.=+.+
T Consensus 282 ~iL~~~~~~~gl~~~l~~evl~~Ia~~~---~gd~R~L~gaL~~l~~ 325 (450)
T PRK14087 282 AIIKKEIKNQNIKQEVTEEAINFISNYY---SDDVRKIKGSVSRLNF 325 (450)
T ss_pred HHHHHHHHhcCCCCCCCHHHHHHHHHcc---CCCHHHHHHHHHHHHH
Confidence 7777766654333479999998885544 4567666666654443
No 63
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=42.09 E-value=3.8e+02 Score=27.44 Aligned_cols=81 Identities=17% Similarity=0.201 Sum_probs=50.6
Q ss_pred cHHHHHHHHHhhcCCCCCEEEEecCccccCchhHHHHHHHHHHhhccCCeEEEEeecCCChhHhhhccHHHHhhccccee
Q 042861 215 DISILASWYREQGNYNNPVVVIVDDIERCCGSVLSDFILMFSEWVLKIPVILIMGVTTTLDAPRNILLSNVLQCLCPCMF 294 (457)
Q Consensus 215 Dl~~L~~Wy~~~~~~~~~lVvil~D~Esfd~~VL~DlI~llSs~~~~IP~vLVfGIATs~~~~~~~Lp~s~~slL~~~~F 294 (457)
++..+..+.........+=||||++.|.++....+.|+..|-+.-.. .+||| +++.++ .|+....++...-.|
T Consensus 94 ~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~--~~~Il-~t~~~~----~ll~TIrSRc~~i~~ 166 (329)
T PRK08058 94 QIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPSGG--TTAIL-LTENKH----QILPTILSRCQVVEF 166 (329)
T ss_pred HHHHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCCCCC--ceEEE-EeCChH----hCcHHHHhhceeeeC
Confidence 45556666543222234558999999999999999998777664333 33444 555433 555567777776666
Q ss_pred eeCCcchH
Q 042861 295 TLGTPSER 302 (457)
Q Consensus 295 ~~~s~~~~ 302 (457)
.-.+..+.
T Consensus 167 ~~~~~~~~ 174 (329)
T PRK08058 167 RPLPPESL 174 (329)
T ss_pred CCCCHHHH
Confidence 66655544
No 64
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=40.70 E-value=6.1e+02 Score=29.06 Aligned_cols=190 Identities=15% Similarity=0.214 Sum_probs=105.1
Q ss_pred EEEecCCCCCCchHHHHHHHHHHhhhcCcEEEEeeCCCCCCCCChhHHHHHHHHHHHcCCCC--ccc-HHHHHHHHHhhc
Q 042861 151 GLVLTKNMEFVDDLLTFEELGRHLKSQGCHVANLSSLDFTAKSGIGGCLRSLLRQFLVAPLD--AAD-ISILASWYREQG 227 (457)
Q Consensus 151 AllltGnin~~dh~~~F~~L~~~L~~~~~~Vv~L~s~dc~~~~~i~~~Lk~ll~qli~~~~~--~yD-l~~L~~Wy~~~~ 227 (457)
++++.|... +.--.+-..|...+ ++.+++++-.++.. +..+.++++.... .|+ ...|....+.
T Consensus 486 ~~lf~Gp~G-vGKT~lA~~la~~l---~~~~~~~d~se~~~--------~~~~~~lig~~~gyvg~~~~~~l~~~~~~-- 551 (731)
T TIGR02639 486 SFLFTGPTG-VGKTELAKQLAEAL---GVHLERFDMSEYME--------KHTVSRLIGAPPGYVGFEQGGLLTEAVRK-- 551 (731)
T ss_pred eEEEECCCC-ccHHHHHHHHHHHh---cCCeEEEeCchhhh--------cccHHHHhcCCCCCcccchhhHHHHHHHh--
Confidence 467777222 34344556666666 35566665444321 2234555554321 222 3344444432
Q ss_pred CCCCCEEEEecCccccCchhHHHHHHHHHHhh------ccCCeE---EEEeecCCC----------------------hh
Q 042861 228 NYNNPVVVIVDDIERCCGSVLSDFILMFSEWV------LKIPVI---LIMGVTTTL----------------------DA 276 (457)
Q Consensus 228 ~~~~~lVvil~D~Esfd~~VL~DlI~llSs~~------~~IP~v---LVfGIATs~----------------------~~ 276 (457)
.+.=||+|+++|-.++.+.+-|+.++.... .++.|. +|+ +|+. +.
T Consensus 552 --~p~~VvllDEieka~~~~~~~Ll~~ld~g~~~d~~g~~vd~~~~iii~--Tsn~g~~~~~~~~~~f~~~~~~~~~~~~ 627 (731)
T TIGR02639 552 --HPHCVLLLDEIEKAHPDIYNILLQVMDYATLTDNNGRKADFRNVILIM--TSNAGASEMSKPPIGFGSENVESKSDKA 627 (731)
T ss_pred --CCCeEEEEechhhcCHHHHHHHHHhhccCeeecCCCcccCCCCCEEEE--CCCcchhhhhhccCCcchhhhHHHHHHH
Confidence 356799999999999999999999997532 233333 333 2211 23
Q ss_pred HhhhccHHHHhhcc-cceeeeCCcchHHHHHHHHHHh-------cCCCceeeChhhHHHHHHHHHhccCCHHHHHHHHHH
Q 042861 277 PRNILLSNVLQCLC-PCMFTLGTPSERMDAIIEAVLV-------RQCSGFSISHKVAVFMRNYFVRQDGTITSFIRALKI 348 (457)
Q Consensus 277 ~~~~Lp~s~~slL~-~~~F~~~s~~~~l~~I~e~vll-------~~~~~f~Lg~~v~~~L~d~F~~~d~Sv~~fi~~LK~ 348 (457)
+++.++...+.++. .-.|.--+. +-+.+|++..+. .....+.++..+..+|.+.-....+....+-+.|+=
T Consensus 628 ~~~~f~pef~~Rid~Vi~F~pLs~-e~l~~Iv~~~L~~l~~~l~~~~~~l~i~~~a~~~La~~~~~~~~GaR~l~r~i~~ 706 (731)
T TIGR02639 628 IKKLFSPEFRNRLDAIIHFNPLSE-EVLEKIVQKFVDELSKQLNEKNIKLELTDDAKKYLAEKGYDEEFGARPLARVIQE 706 (731)
T ss_pred HHhhcChHHHhcCCeEEEcCCCCH-HHHHHHHHHHHHHHHHHHHhCCCeEEeCHHHHHHHHHhCCCcccCchHHHHHHHH
Confidence 44556777777775 333544333 445555555543 223468899999998888644444554444444432
Q ss_pred HHHhhhccCccccccc
Q 042861 349 ACSQHFSMEPLSIILK 364 (457)
Q Consensus 349 a~M~HFy~nPLSvL~~ 364 (457)
-+ ..||+-.+.
T Consensus 707 ~~-----~~~l~~~~l 717 (731)
T TIGR02639 707 EI-----KKPLSDEIL 717 (731)
T ss_pred Hh-----HHHHHHHHH
Confidence 22 455554443
No 65
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=40.48 E-value=5.8e+02 Score=28.70 Aligned_cols=107 Identities=18% Similarity=0.217 Sum_probs=68.3
Q ss_pred CCEEEEecCccccCchhHHHHHHHHHHhhccCCeEEEEeecCCChhHhhhccHHHHhhcccceeeeCCcchHHHHHHHHH
Q 042861 231 NPVVVIVDDIERCCGSVLSDFILMFSEWVLKIPVILIMGVTTTLDAPRNILLSNVLQCLCPCMFTLGTPSERMDAIIEAV 310 (457)
Q Consensus 231 ~~lVvil~D~Esfd~~VL~DlI~llSs~~~~IP~vLVfGIATs~~~~~~~Lp~s~~slL~~~~F~~~s~~~~l~~I~e~v 310 (457)
+.=||||++.+.++.+..+.|+..|-..-.. ++||| ++|.+ ..++....++...-.|.-.+.. -+...+..+
T Consensus 118 ~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~--~~fIL-~tte~----~kll~TI~SRc~~~~F~~l~~~-~i~~~L~~i 189 (584)
T PRK14952 118 RYRIFIVDEAHMVTTAGFNALLKIVEEPPEH--LIFIF-ATTEP----EKVLPTIRSRTHHYPFRLLPPR-TMRALIARI 189 (584)
T ss_pred CceEEEEECCCcCCHHHHHHHHHHHhcCCCC--eEEEE-EeCCh----HhhHHHHHHhceEEEeeCCCHH-HHHHHHHHH
Confidence 4558899999999999999888766654332 33333 23444 3666666777544445544443 344444555
Q ss_pred HhcCCCceeeChhhHHHHHHHHHhccCCHHHHHHHHHHHH
Q 042861 311 LVRQCSGFSISHKVAVFMRNYFVRQDGTITSFIRALKIAC 350 (457)
Q Consensus 311 ll~~~~~f~Lg~~v~~~L~d~F~~~d~Sv~~fi~~LK~a~ 350 (457)
+... ...+...++.++ ....+.++...++.|+-++
T Consensus 190 ~~~e--gi~i~~~al~~I---a~~s~GdlR~aln~Ldql~ 224 (584)
T PRK14952 190 CEQE--GVVVDDAVYPLV---IRAGGGSPRDTLSVLDQLL 224 (584)
T ss_pred HHHc--CCCCCHHHHHHH---HHHcCCCHHHHHHHHHHHH
Confidence 5544 356778877665 4467788888888887654
No 66
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=40.32 E-value=7.2e+02 Score=29.74 Aligned_cols=107 Identities=14% Similarity=0.219 Sum_probs=70.4
Q ss_pred CCCEEEEecCccccCchhHHHHHHHHHHhhccCCeEEEEeecCCChhHhhhccHHHHhhcccceeeeCCcc-hHHHHHHH
Q 042861 230 NNPVVVIVDDIERCCGSVLSDFILMFSEWVLKIPVILIMGVTTTLDAPRNILLSNVLQCLCPCMFTLGTPS-ERMDAIIE 308 (457)
Q Consensus 230 ~~~lVvil~D~Esfd~~VL~DlI~llSs~~~~IP~vLVfGIATs~~~~~~~Lp~s~~slL~~~~F~~~s~~-~~l~~I~e 308 (457)
.+.-|+||.+.+.++....+.|+.++-++-..+.|+| ++|.+. .|+...+++.. .|.+..-+ +-+...++
T Consensus 118 gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFIL---aTTe~~----kLl~TIlSRCq--~f~fkpLs~eEI~~~L~ 188 (944)
T PRK14949 118 GRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLL---ATTDPQ----KLPVTVLSRCL--QFNLKSLTQDEIGTQLN 188 (944)
T ss_pred CCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEE---ECCCch----hchHHHHHhhe--EEeCCCCCHHHHHHHHH
Confidence 3567999999999999999999998888766555444 255544 35555666554 45544442 33333444
Q ss_pred HHHhcCCCceeeChhhHHHHHHHHHhccCCHHHHHHHHHHHH
Q 042861 309 AVLVRQCSGFSISHKVAVFMRNYFVRQDGTITSFIRALKIAC 350 (457)
Q Consensus 309 ~vll~~~~~f~Lg~~v~~~L~d~F~~~d~Sv~~fi~~LK~a~ 350 (457)
.++... .+.+.+..+..|. ...++++...+..+.-|+
T Consensus 189 ~il~~E--gI~~edeAL~lIA---~~S~Gd~R~ALnLLdQal 225 (944)
T PRK14949 189 HILTQE--QLPFEAEALTLLA---KAANGSMRDALSLTDQAI 225 (944)
T ss_pred HHHHHc--CCCCCHHHHHHHH---HHcCCCHHHHHHHHHHHH
Confidence 444443 4667777776664 457888888888776655
No 67
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=40.25 E-value=2.4e+02 Score=32.05 Aligned_cols=105 Identities=16% Similarity=0.210 Sum_probs=66.2
Q ss_pred CCEEEEecCccccCchhHHHHHHHHHHhhccCCeEEEEeecCCChhHhhhccHHHHhhcccceeeeCCcchHHHHHHHHH
Q 042861 231 NPVVVIVDDIERCCGSVLSDFILMFSEWVLKIPVILIMGVTTTLDAPRNILLSNVLQCLCPCMFTLGTPSERMDAIIEAV 310 (457)
Q Consensus 231 ~~lVvil~D~Esfd~~VL~DlI~llSs~~~~IP~vLVfGIATs~~~~~~~Lp~s~~slL~~~~F~~~s~~~~l~~I~e~v 310 (457)
..-||||++.+.++....+.|+..+.+...+ ++||| ++|... .++....++...-.|.-.+. +-+...++.+
T Consensus 119 ~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~--~ifIL-aTt~~~----kll~TI~SRcq~i~F~pLs~-~eL~~~L~~i 190 (624)
T PRK14959 119 RYKVFIIDEAHMLTREAFNALLKTLEEPPAR--VTFVL-ATTEPH----KFPVTIVSRCQHFTFTRLSE-AGLEAHLTKV 190 (624)
T ss_pred CceEEEEEChHhCCHHHHHHHHHHhhccCCC--EEEEE-ecCChh----hhhHHHHhhhhccccCCCCH-HHHHHHHHHH
Confidence 4569999999999999999998888775443 33333 455444 33344455544333443333 3344445555
Q ss_pred HhcCCCceeeChhhHHHHHHHHHhccCCHHHHHHHHHH
Q 042861 311 LVRQCSGFSISHKVAVFMRNYFVRQDGTITSFIRALKI 348 (457)
Q Consensus 311 ll~~~~~f~Lg~~v~~~L~d~F~~~d~Sv~~fi~~LK~ 348 (457)
+... ...+.+..+..|.. ..+.++...++.|.-
T Consensus 191 l~~e--gi~id~eal~lIA~---~s~GdlR~Al~lLeq 223 (624)
T PRK14959 191 LGRE--GVDYDPAAVRLIAR---RAAGSVRDSMSLLGQ 223 (624)
T ss_pred HHHc--CCCCCHHHHHHHHH---HcCCCHHHHHHHHHH
Confidence 5444 45678888877654 456788888888753
No 68
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=38.06 E-value=2.3e+02 Score=23.32 Aligned_cols=58 Identities=14% Similarity=0.154 Sum_probs=36.2
Q ss_pred CCCEEEEecCccccCchhHHHHHHHHHHhhccC---CeEEEEeecCCChhHhhhccHHHHhhc
Q 042861 230 NNPVVVIVDDIERCCGSVLSDFILMFSEWVLKI---PVILIMGVTTTLDAPRNILLSNVLQCL 289 (457)
Q Consensus 230 ~~~lVvil~D~Esfd~~VL~DlI~llSs~~~~I---P~vLVfGIATs~~~~~~~Lp~s~~slL 289 (457)
..+.+|+++|++...+.....+..++......+ +-+.++.++..... ..++.....++
T Consensus 83 ~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~~--~~~~~~~~~r~ 143 (151)
T cd00009 83 AKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPLL--GDLDRALYDRL 143 (151)
T ss_pred CCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCcccc--CCcChhHHhhh
Confidence 467899999999998888888888887776432 23334444444332 33344444433
No 69
>PRK13342 recombination factor protein RarA; Reviewed
Probab=35.85 E-value=5.5e+02 Score=27.08 Aligned_cols=111 Identities=14% Similarity=0.199 Sum_probs=69.3
Q ss_pred CCEEEEecCccccCchhHHHHHHHHHHhhccCCeEEEEeecCCChhHhhhccHHHHhhcccceeeeCCcchHHHHHHHHH
Q 042861 231 NPVVVIVDDIERCCGSVLSDFILMFSEWVLKIPVILIMGVTTTLDAPRNILLSNVLQCLCPCMFTLGTPSERMDAIIEAV 310 (457)
Q Consensus 231 ~~lVvil~D~Esfd~~VL~DlI~llSs~~~~IP~vLVfGIATs~~~~~~~Lp~s~~slL~~~~F~~~s~~~~l~~I~e~v 310 (457)
.+.||+|+|.+.++.....-|+..+.. =. +.++|..|.. ....++....++...-.|.-.+. +-+..+++.+
T Consensus 92 ~~~vL~IDEi~~l~~~~q~~LL~~le~----~~-iilI~att~n--~~~~l~~aL~SR~~~~~~~~ls~-e~i~~lL~~~ 163 (413)
T PRK13342 92 RRTILFIDEIHRFNKAQQDALLPHVED----GT-ITLIGATTEN--PSFEVNPALLSRAQVFELKPLSE-EDIEQLLKRA 163 (413)
T ss_pred CceEEEEechhhhCHHHHHHHHHHhhc----Cc-EEEEEeCCCC--hhhhccHHHhccceeeEeCCCCH-HHHHHHHHHH
Confidence 578999999999998776666655543 22 3444544432 22346666777664333443332 4555666666
Q ss_pred HhcCCCce-eeChhhHHHHHHHHHhccCCHHHHHHHHHHHHHh
Q 042861 311 LVRQCSGF-SISHKVAVFMRNYFVRQDGTITSFIRALKIACSQ 352 (457)
Q Consensus 311 ll~~~~~f-~Lg~~v~~~L~d~F~~~d~Sv~~fi~~LK~a~M~ 352 (457)
+......+ .++..+++.|.. ..+.++...+..|+.+...
T Consensus 164 l~~~~~~~i~i~~~al~~l~~---~s~Gd~R~aln~Le~~~~~ 203 (413)
T PRK13342 164 LEDKERGLVELDDEALDALAR---LANGDARRALNLLELAALG 203 (413)
T ss_pred HHHhhcCCCCCCHHHHHHHHH---hCCCCHHHHHHHHHHHHHc
Confidence 65432234 678887776644 4578899999998887643
No 70
>KOG2303 consensus Predicted NAD synthase, contains CN hydrolase domain [Coenzyme transport and metabolism; General function prediction only]
Probab=35.38 E-value=57 Score=35.83 Aligned_cols=63 Identities=27% Similarity=0.383 Sum_probs=40.6
Q ss_pred cceEEEecCCCCCCchHHHHHHHHHHhhhcCcEEEEeeCCCCCCCCChhHHHHHHHHHHHcCCCCcccHHHHHHHHH
Q 042861 148 LFTGLVLTKNMEFVDDLLTFEELGRHLKSQGCHVANLSSLDFTAKSGIGGCLRSLLRQFLVAPLDAADISILASWYR 224 (457)
Q Consensus 148 IPTAllltGnin~~dh~~~F~~L~~~L~~~~~~Vv~L~s~dc~~~~~i~~~Lk~ll~qli~~~~~~yDl~~L~~Wy~ 224 (457)
.|-+++++|+.|+ | +.|...|.+-.|--+.++| |++.=|.=+++|+.-+.+.|+|-+|+....
T Consensus 506 ~~GglLVLGSaNV-D-----E~LrGYLTKYDCSSADINP--------IGgISK~DLr~Fl~~a~~~~~lp~L~~il~ 568 (706)
T KOG2303|consen 506 RPGGLLVLGSANV-D-----ESLRGYLTKYDCSSADINP--------IGGISKTDLRRFLQYAKEKFGLPALQSILD 568 (706)
T ss_pred CCCceEEEecCcc-c-----hHhhhhhhhccccccccCC--------ccCccHHHHHHHHHHHHHhcCchHHHHHhc
Confidence 4669999997663 4 3455566544453343443 677778888888876666677777766653
No 71
>CHL00181 cbbX CbbX; Provisional
Probab=34.89 E-value=4.9e+02 Score=26.20 Aligned_cols=113 Identities=12% Similarity=0.140 Sum_probs=68.1
Q ss_pred EEEecCcccc---------CchhHHHHHHHHHHhhccCCeEEEEeecCCChhHhhhc--cHHHHhhcccceeeeCCcc-h
Q 042861 234 VVIVDDIERC---------CGSVLSDFILMFSEWVLKIPVILIMGVTTTLDAPRNIL--LSNVLQCLCPCMFTLGTPS-E 301 (457)
Q Consensus 234 Vvil~D~Esf---------d~~VL~DlI~llSs~~~~IP~vLVfGIATs~~~~~~~L--p~s~~slL~~~~F~~~s~~-~ 301 (457)
|++|++++.. ...+.+.|+.++...... +++|+ |+..+.+...+ .+...+++. ..+.+++-+ +
T Consensus 125 VLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~--~~vI~--ag~~~~~~~~~~~np~L~sR~~-~~i~F~~~t~~ 199 (287)
T CHL00181 125 VLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDD--LVVIF--AGYKDRMDKFYESNPGLSSRIA-NHVDFPDYTPE 199 (287)
T ss_pred EEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCC--EEEEE--eCCcHHHHHHHhcCHHHHHhCC-ceEEcCCcCHH
Confidence 9999999874 555666666666554333 33333 45544444333 455666654 344444444 4
Q ss_pred HHHHHHHHHHhcCCCceeeChhhHHHHHHHHHhc----c-CCHHHHHHHHHHHHHhh
Q 042861 302 RMDAIIEAVLVRQCSGFSISHKVAVFMRNYFVRQ----D-GTITSFIRALKIACSQH 353 (457)
Q Consensus 302 ~l~~I~e~vll~~~~~f~Lg~~v~~~L~d~F~~~----d-~Sv~~fi~~LK~a~M~H 353 (457)
-+.+|++..+... .+.+.+.....|.+++.+. + .+.....+.++-+.+.+
T Consensus 200 el~~I~~~~l~~~--~~~l~~~~~~~L~~~i~~~~~~~~~GNaR~vrn~ve~~~~~~ 254 (287)
T CHL00181 200 ELLQIAKIMLEEQ--QYQLTPEAEKALLDYIKKRMEQPLFANARSVRNALDRARMRQ 254 (287)
T ss_pred HHHHHHHHHHHHh--cCCCChhHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHHH
Confidence 6677888877765 4678888887777776642 2 33666666666666554
No 72
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=33.73 E-value=6e+02 Score=26.95 Aligned_cols=70 Identities=7% Similarity=0.100 Sum_probs=45.2
Q ss_pred CCCEEEEecCccccCchhHHHHHHHHHHhhccCCeEEEEeecCCChhHhhhccHHHHhhcccceeeeCCcchHHHHH
Q 042861 230 NNPVVVIVDDIERCCGSVLSDFILMFSEWVLKIPVILIMGVTTTLDAPRNILLSNVLQCLCPCMFTLGTPSERMDAI 306 (457)
Q Consensus 230 ~~~lVvil~D~Esfd~~VL~DlI~llSs~~~~IP~vLVfGIATs~~~~~~~Lp~s~~slL~~~~F~~~s~~~~l~~I 306 (457)
.+.-|++|+|.|.++..--+-|+..+.+..... ++|++ +|++ ..|+....|+...-.|..++..+....+
T Consensus 116 ~~~kViiIDead~m~~~aanaLLk~LEep~~~~--~fIL~-a~~~----~~llpTIrSRc~~i~f~~~~~~~i~~~L 185 (394)
T PRK07940 116 GRWRIVVIEDADRLTERAANALLKAVEEPPPRT--VWLLC-APSP----EDVLPTIRSRCRHVALRTPSVEAVAEVL 185 (394)
T ss_pred CCcEEEEEechhhcCHHHHHHHHHHhhcCCCCC--eEEEE-ECCh----HHChHHHHhhCeEEECCCCCHHHHHHHH
Confidence 345688999999999999888998887765443 34443 4443 3455556666665556666555544333
No 73
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=32.54 E-value=7.7e+02 Score=27.79 Aligned_cols=105 Identities=15% Similarity=0.255 Sum_probs=66.7
Q ss_pred CCEEEEecCccccCchhHHHHHHHHHHhhccCCeEEEEeecCCChhHhhhccHHHHhhcccceeeeCCcc-hHHHHHHHH
Q 042861 231 NPVVVIVDDIERCCGSVLSDFILMFSEWVLKIPVILIMGVTTTLDAPRNILLSNVLQCLCPCMFTLGTPS-ERMDAIIEA 309 (457)
Q Consensus 231 ~~lVvil~D~Esfd~~VL~DlI~llSs~~~~IP~vLVfGIATs~~~~~~~Lp~s~~slL~~~~F~~~s~~-~~l~~I~e~ 309 (457)
..=||||++.+.++..-.+.|+..|.+.-...-|+| ++|.++ + ++....++.. .|++.... +-+...+++
T Consensus 132 ~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl---~tte~~---k-ll~tI~SRcq--~~~f~~l~~~el~~~L~~ 202 (598)
T PRK09111 132 RYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIF---ATTEIR---K-VPVTVLSRCQ--RFDLRRIEADVLAAHLSR 202 (598)
T ss_pred CcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEE---EeCChh---h-hhHHHHhhee--EEEecCCCHHHHHHHHHH
Confidence 344789999999999988888887777655544444 234443 3 5555666543 55554433 344555566
Q ss_pred HHhcCCCceeeChhhHHHHHHHHHhccCCHHHHHHHHHHH
Q 042861 310 VLVRQCSGFSISHKVAVFMRNYFVRQDGTITSFIRALKIA 349 (457)
Q Consensus 310 vll~~~~~f~Lg~~v~~~L~d~F~~~d~Sv~~fi~~LK~a 349 (457)
++... ...+++..+..|.. ..+.++...++.|+-+
T Consensus 203 i~~ke--gi~i~~eAl~lIa~---~a~Gdlr~al~~Ldkl 237 (598)
T PRK09111 203 IAAKE--GVEVEDEALALIAR---AAEGSVRDGLSLLDQA 237 (598)
T ss_pred HHHHc--CCCCCHHHHHHHHH---HcCCCHHHHHHHHHHH
Confidence 66544 56788887766644 4467777777777543
No 74
>CHL00195 ycf46 Ycf46; Provisional
Probab=32.08 E-value=6.4e+02 Score=27.67 Aligned_cols=124 Identities=13% Similarity=0.115 Sum_probs=75.9
Q ss_pred HHHHHHHHHhhcCCCCCEEEEecCcccc--CchhHHHHHHHHHHhhccCCeEEEEeecCCChhHhhhccHHHHhhcccce
Q 042861 216 ISILASWYREQGNYNNPVVVIVDDIERC--CGSVLSDFILMFSEWVLKIPVILIMGVTTTLDAPRNILLSNVLQCLCPCM 293 (457)
Q Consensus 216 l~~L~~Wy~~~~~~~~~lVvil~D~Esf--d~~VL~DlI~llSs~~~~IP~vLVfGIATs~~~~~~~Lp~s~~slL~~~~ 293 (457)
+++|. |..... ...|-|++++||.-| ++.|...|-.+...+...=+.++++| .. -.+|.+.-..+..-.
T Consensus 68 ~~al~-~i~~~~-~~~~~~~vl~d~h~~~~~~~~~r~l~~l~~~~~~~~~~~i~~~--~~-----~~~p~el~~~~~~~~ 138 (489)
T CHL00195 68 LQALE-FIEKLT-PETPALFLLKDFNRFLNDISISRKLRNLSRILKTQPKTIIIIA--SE-----LNIPKELKDLITVLE 138 (489)
T ss_pred HHHHH-HHHhcC-CCCCcEEEEecchhhhcchHHHHHHHHHHHHHHhCCCEEEEEc--CC-----CCCCHHHHhceeEEe
Confidence 67776 554442 234789999999999 77777766666555554444445544 21 346777777665555
Q ss_pred eeeCCcchHHHHHHHHHHhcCCCceeeChhhHHHHHHHHHhccCCHHHHHHHHHHHHHhh
Q 042861 294 FTLGTPSERMDAIIEAVLVRQCSGFSISHKVAVFMRNYFVRQDGTITSFIRALKIACSQH 353 (457)
Q Consensus 294 F~~~s~~~~l~~I~e~vll~~~~~f~Lg~~v~~~L~d~F~~~d~Sv~~fi~~LK~a~M~H 353 (457)
|.+++..++- .+++.+.. ..+..+++...+-|... .+..|.....+.+..++..|
T Consensus 139 ~~lP~~~ei~-~~l~~~~~--~~~~~~~~~~~~~l~~~--~~gls~~~~~~~~~~~~~~~ 193 (489)
T CHL00195 139 FPLPTESEIK-KELTRLIK--SLNIKIDSELLENLTRA--CQGLSLERIRRVLSKIIATY 193 (489)
T ss_pred ecCcCHHHHH-HHHHHHHH--hcCCCCCHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHc
Confidence 6666655544 44566553 22456777766544433 35677777777777666543
No 75
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=31.13 E-value=3e+02 Score=30.34 Aligned_cols=110 Identities=11% Similarity=0.157 Sum_probs=72.1
Q ss_pred EEEEecCccccCchhHHHHHHHHHHhh------------------------ccCCeEEEEeecCCChhHhhhccHHHHhh
Q 042861 233 VVVIVDDIERCCGSVLSDFILMFSEWV------------------------LKIPVILIMGVTTTLDAPRNILLSNVLQC 288 (457)
Q Consensus 233 lVvil~D~Esfd~~VL~DlI~llSs~~------------------------~~IP~vLVfGIATs~~~~~~~Lp~s~~sl 288 (457)
=+++|++.+.+++...+.|+.++..-. ..+|.-+.+=+||+.+. ..+|....++
T Consensus 177 G~L~IdEI~~L~~~~q~~LL~~Le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~rlI~ATt~~p--~~L~paLrsR 254 (531)
T TIGR02902 177 GVLFIDEIGELHPVQMNKLLKVLEDRKVFLDSAYYNSENPNIPSHIHDIFQNGLPADFRLIGATTRNP--EEIPPALRSR 254 (531)
T ss_pred cEEEEechhhCCHHHHHHHHHHHHhCeeeeccccccccCcccccchhhhcccCcccceEEEEEecCCc--ccCChHHhhh
Confidence 489999999999999999998885421 12343334434555432 2567777776
Q ss_pred cccceeeeCCcchHHHHHHHHHHhcCCCceeeChhhHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 042861 289 LCPCMFTLGTPSERMDAIIEAVLVRQCSGFSISHKVAVFMRNYFVRQDGTITSFIRALKIACS 351 (457)
Q Consensus 289 L~~~~F~~~s~~~~l~~I~e~vll~~~~~f~Lg~~v~~~L~d~F~~~d~Sv~~fi~~LK~a~M 351 (457)
...-.|.--. .+-+..+++..+-.. .+.++..+++.|..+- .+...++..++.|..
T Consensus 255 ~~~I~f~pL~-~eei~~Il~~~a~k~--~i~is~~al~~I~~y~----~n~Rel~nll~~Aa~ 310 (531)
T TIGR02902 255 CVEIFFRPLL-DEEIKEIAKNAAEKI--GINLEKHALELIVKYA----SNGREAVNIVQLAAG 310 (531)
T ss_pred hheeeCCCCC-HHHHHHHHHHHHHHc--CCCcCHHHHHHHHHhh----hhHHHHHHHHHHHHH
Confidence 5433444333 344677777766654 4778999988776543 367777788887764
No 76
>PF06144 DNA_pol3_delta: DNA polymerase III, delta subunit; InterPro: IPR010372 DNA polymerase III, delta subunit (2.7.7.7 from EC) is required for, along with delta' subunit, the assembly of the processivity factor beta(2) onto primed DNA in the DNA polymerase III holoenzyme-catalysed reaction []. The delta subunit is also known as HolA.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication, 0009360 DNA polymerase III complex; PDB: 3GLG_F 1XXH_A 1JQL_B 3GLF_F 1JQJ_C 3GLI_F.
Probab=30.44 E-value=2.7e+02 Score=24.75 Aligned_cols=96 Identities=14% Similarity=0.181 Sum_probs=46.4
Q ss_pred CCEEEEecCc----cccCchhHHHHHHHHHHhhccCCeEEEEeecCCChhHhhhccHHHHhhcccceeeeCC-cchHHHH
Q 042861 231 NPVVVIVDDI----ERCCGSVLSDFILMFSEWVLKIPVILIMGVTTTLDAPRNILLSNVLQCLCPCMFTLGT-PSERMDA 305 (457)
Q Consensus 231 ~~lVvil~D~----Esfd~~VL~DlI~llSs~~~~IP~vLVfGIATs~~~~~~~Lp~s~~slL~~~~F~~~s-~~~~l~~ 305 (457)
.+-||++++. +.........|+.+++.--+...+++... ...+.=.+ ....+.. .+..++... ...-+..
T Consensus 57 ~~klvii~~~~~l~~~~~~~~~~~l~~~l~~~~~~~~lii~~~--~~~~~~~k--~~k~l~~-~~~~~~~~~~~~~~~~~ 131 (172)
T PF06144_consen 57 DKKLVIIKNAPFLKDKLKKKEIKALIEYLSNPPPDCILIIFSE--EKLDKRKK--LYKALKK-QAIVIECKKPKEQELPR 131 (172)
T ss_dssp SEEEEEEE-----TT-S-TTHHHHHHHHTTT--SSEEEEEEES---S--HHHH--HHHHHTT-TEEEEEE----TTTHHH
T ss_pred CCeEEEEecCccccccccHHHHHHHHHHHhCCCCCEEEEEEeC--Cchhhhhh--HHHHHhc-ccceEEecCCCHHHHHH
Confidence 3457777777 55777888888776655544444333333 33332111 2222222 223333322 3345566
Q ss_pred HHHHHHhcCCCceeeChhhHHHHHHHHH
Q 042861 306 IIEAVLVRQCSGFSISHKVAVFMRNYFV 333 (457)
Q Consensus 306 I~e~vll~~~~~f~Lg~~v~~~L~d~F~ 333 (457)
.++..+... ++.+++.+.+.|.++..
T Consensus 132 ~i~~~~~~~--g~~i~~~a~~~L~~~~~ 157 (172)
T PF06144_consen 132 WIKERAKKN--GLKIDPDAAQYLIERVG 157 (172)
T ss_dssp HHHHHHHHT--T-EE-HHHHHHHHHHHT
T ss_pred HHHHHHHHc--CCCCCHHHHHHHHHHhC
Confidence 667777665 78999999999876654
No 77
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=30.39 E-value=4.4e+02 Score=30.46 Aligned_cols=109 Identities=14% Similarity=0.232 Sum_probs=67.9
Q ss_pred CCEEEEecCccccCchhHHHHHHHHHHhhccCCeEEEEeecCCChhHhhhccHHHHhhcccceeeeCCcc-hHHHHHHHH
Q 042861 231 NPVVVIVDDIERCCGSVLSDFILMFSEWVLKIPVILIMGVTTTLDAPRNILLSNVLQCLCPCMFTLGTPS-ERMDAIIEA 309 (457)
Q Consensus 231 ~~lVvil~D~Esfd~~VL~DlI~llSs~~~~IP~vLVfGIATs~~~~~~~Lp~s~~slL~~~~F~~~s~~-~~l~~I~e~ 309 (457)
...|++|+|.+.|+...-+.|...+ .+=.++ +.|..|.. .. ..+.....++. ..|.+++-. +-+..+++.
T Consensus 109 ~~~IL~IDEIh~Ln~~qQdaLL~~l----E~g~Ii-LI~aTTen-p~-~~l~~aL~SR~--~v~~l~pLs~edi~~IL~~ 179 (725)
T PRK13341 109 KRTILFIDEVHRFNKAQQDALLPWV----ENGTIT-LIGATTEN-PY-FEVNKALVSRS--RLFRLKSLSDEDLHQLLKR 179 (725)
T ss_pred CceEEEEeChhhCCHHHHHHHHHHh----cCceEE-EEEecCCC-hH-hhhhhHhhccc--cceecCCCCHHHHHHHHHH
Confidence 4679999999999976655444333 332333 33433332 11 23334444442 346555544 566677777
Q ss_pred HHhcC-----CCceeeChhhHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 042861 310 VLVRQ-----CSGFSISHKVAVFMRNYFVRQDGTITSFIRALKIACS 351 (457)
Q Consensus 310 vll~~-----~~~f~Lg~~v~~~L~d~F~~~d~Sv~~fi~~LK~a~M 351 (457)
++... ...+.+.+.++.+|... ++.++..++..|+.+..
T Consensus 180 ~l~~~~~~~g~~~v~I~deaL~~La~~---s~GD~R~lln~Le~a~~ 223 (725)
T PRK13341 180 ALQDKERGYGDRKVDLEPEAEKHLVDV---ANGDARSLLNALELAVE 223 (725)
T ss_pred HHHHHHhhcCCcccCCCHHHHHHHHHh---CCCCHHHHHHHHHHHHH
Confidence 66521 23578899999888764 48899999999998774
No 78
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=28.95 E-value=7.5e+02 Score=26.58 Aligned_cols=133 Identities=15% Similarity=0.210 Sum_probs=89.6
Q ss_pred HHHHHHHHHhhcCCCCCEEEEecCccccCc--hhHHHHHHHHHHhhccCCeEEEEeecCCChhHhhhccHHHHhhcccce
Q 042861 216 ISILASWYREQGNYNNPVVVIVDDIERCCG--SVLSDFILMFSEWVLKIPVILIMGVTTTLDAPRNILLSNVLQCLCPCM 293 (457)
Q Consensus 216 l~~L~~Wy~~~~~~~~~lVvil~D~Esfd~--~VL~DlI~llSs~~~~IP~vLVfGIATs~~~~~~~Lp~s~~slL~~~~ 293 (457)
|+.....| .. -+++|+|.+.+.. ..-..|..++......=. -+|+.-..+|..+...+|+=..++=-|-.
T Consensus 167 ~~~Fk~~y-~~------dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~k-qIvltsdr~P~~l~~~~~rL~SR~~~Gl~ 238 (408)
T COG0593 167 MEKFKEKY-SL------DLLLIDDIQFLAGKERTQEEFFHTFNALLENGK-QIVLTSDRPPKELNGLEDRLRSRLEWGLV 238 (408)
T ss_pred HHHHHHhh-cc------CeeeechHhHhcCChhHHHHHHHHHHHHHhcCC-EEEEEcCCCchhhccccHHHHHHHhceeE
Confidence 66667777 43 2899999998655 568889999988886554 45555555666666666665555555666
Q ss_pred eeeCCcc-hHHHHHHHHHHhcCCCceeeChhhHHHHHHHHHhccCCHHHHHHHH-HHHHHhhhccCcccc
Q 042861 294 FTLGTPS-ERMDAIIEAVLVRQCSGFSISHKVAVFMRNYFVRQDGTITSFIRAL-KIACSQHFSMEPLSI 361 (457)
Q Consensus 294 F~~~s~~-~~l~~I~e~vll~~~~~f~Lg~~v~~~L~d~F~~~d~Sv~~fi~~L-K~a~M~HFy~nPLSv 361 (457)
.++.++. +..-.|+++-.. +.++.+...++.||..++.+. +..+..+| ++....-|-..++.+
T Consensus 239 ~~I~~Pd~e~r~aiL~kka~--~~~~~i~~ev~~~la~~~~~n---vReLegaL~~l~~~a~~~~~~iTi 303 (408)
T COG0593 239 VEIEPPDDETRLAILRKKAE--DRGIEIPDEVLEFLAKRLDRN---VRELEGALNRLDAFALFTKRAITI 303 (408)
T ss_pred EeeCCCCHHHHHHHHHHHHH--hcCCCCCHHHHHHHHHHhhcc---HHHHHHHHHHHHHHHHhcCccCcH
Confidence 8888887 555566666333 347999999999999888764 44444444 444455555555554
No 79
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=28.40 E-value=9.8e+02 Score=27.75 Aligned_cols=121 Identities=15% Similarity=0.178 Sum_probs=69.9
Q ss_pred HHHHHHHHHhhcCCCCCEEEEecCccccCchhHHHHHHHHHHhhccCCeEEEEeecCCChhHhhhccHHHHhhcccceee
Q 042861 216 ISILASWYREQGNYNNPVVVIVDDIERCCGSVLSDFILMFSEWVLKIPVILIMGVTTTLDAPRNILLSNVLQCLCPCMFT 295 (457)
Q Consensus 216 l~~L~~Wy~~~~~~~~~lVvil~D~Esfd~~VL~DlI~llSs~~~~IP~vLVfGIATs~~~~~~~Lp~s~~slL~~~~F~ 295 (457)
++.|.+.........+.-|+||++.+.+..+..+.|+..|-+.-. ..+||| ++|.++ .|+....++...-.|.
T Consensus 103 IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~--~tifIL-aTte~~----KLl~TI~SRcq~ieF~ 175 (725)
T PRK07133 103 IRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPK--HVIFIL-ATTEVH----KIPLTILSRVQRFNFR 175 (725)
T ss_pred HHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCC--ceEEEE-EcCChh----hhhHHHHhhceeEEcc
Confidence 445554443322223556889999999999998888876665322 133443 444443 5566667666544444
Q ss_pred eCCcchHHHHHHHHHHhcCCCceeeChhhHHHHHHHHHhccCCHHHHHHHHHHH
Q 042861 296 LGTPSERMDAIIEAVLVRQCSGFSISHKVAVFMRNYFVRQDGTITSFIRALKIA 349 (457)
Q Consensus 296 ~~s~~~~l~~I~e~vll~~~~~f~Lg~~v~~~L~d~F~~~d~Sv~~fi~~LK~a 349 (457)
-.+..+ +...+..++... +..+.+..++.|. ...++++...++.++-+
T Consensus 176 ~L~~ee-I~~~L~~il~ke--gI~id~eAl~~LA---~lS~GslR~AlslLekl 223 (725)
T PRK07133 176 RISEDE-IVSRLEFILEKE--NISYEKNALKLIA---KLSSGSLRDALSIAEQV 223 (725)
T ss_pred CCCHHH-HHHHHHHHHHHc--CCCCCHHHHHHHH---HHcCCCHHHHHHHHHHH
Confidence 444443 333444444443 3566677665553 45567777777777644
No 80
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=28.13 E-value=1.4e+02 Score=31.31 Aligned_cols=80 Identities=15% Similarity=0.144 Sum_probs=47.6
Q ss_pred HHHHHHHHHhhcCCCCCEEEEecCccccCchhHHHHHHHHHHhhccCCeEEEEeecCCChhHhhhccHHHHhhcccceee
Q 042861 216 ISILASWYREQGNYNNPVVVIVDDIERCCGSVLSDFILMFSEWVLKIPVILIMGVTTTLDAPRNILLSNVLQCLCPCMFT 295 (457)
Q Consensus 216 l~~L~~Wy~~~~~~~~~lVvil~D~Esfd~~VL~DlI~llSs~~~~IP~vLVfGIATs~~~~~~~Lp~s~~slL~~~~F~ 295 (457)
+..+..+.........+.||+|+|.|.++....+-|+.++-+.....-|+ + ++..++. ++....++...-.|.
T Consensus 126 iR~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEepp~~~~~I--L-~t~~~~~----llpti~SRc~~i~l~ 198 (365)
T PRK07471 126 VRELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEPPARSLFL--L-VSHAPAR----LLPTIRSRCRKLRLR 198 (365)
T ss_pred HHHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhcCCCCeEEE--E-EECCchh----chHHhhccceEEECC
Confidence 44444454333334578999999999999999999998887654444232 2 5555552 333344444433343
Q ss_pred eCCcchH
Q 042861 296 LGTPSER 302 (457)
Q Consensus 296 ~~s~~~~ 302 (457)
-.+..+.
T Consensus 199 ~l~~~~i 205 (365)
T PRK07471 199 PLAPEDV 205 (365)
T ss_pred CCCHHHH
Confidence 3333333
No 81
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=27.61 E-value=1e+03 Score=27.68 Aligned_cols=177 Identities=14% Similarity=0.185 Sum_probs=98.8
Q ss_pred EEEecCCCCCCchHHHHHHHHHHhhhcCcEEEEeeCCCCCCCCChhHHHHHHHHHHHcCCC--CcccH-HHHHHHHHhhc
Q 042861 151 GLVLTKNMEFVDDLLTFEELGRHLKSQGCHVANLSSLDFTAKSGIGGCLRSLLRQFLVAPL--DAADI-SILASWYREQG 227 (457)
Q Consensus 151 AllltGnin~~dh~~~F~~L~~~L~~~~~~Vv~L~s~dc~~~~~i~~~Lk~ll~qli~~~~--~~yDl-~~L~~Wy~~~~ 227 (457)
.+++.|- .-..-..+-..|+..+. ..+++++-.+... +..+.+|++... ..|+- ..|..+...
T Consensus 490 ~~Lf~GP-~GvGKT~lAk~LA~~l~---~~~i~id~se~~~--------~~~~~~LiG~~~gyvg~~~~g~L~~~v~~-- 555 (758)
T PRK11034 490 SFLFAGP-TGVGKTEVTVQLSKALG---IELLRFDMSEYME--------RHTVSRLIGAPPGYVGFDQGGLLTDAVIK-- 555 (758)
T ss_pred eEEEECC-CCCCHHHHHHHHHHHhC---CCcEEeechhhcc--------cccHHHHcCCCCCcccccccchHHHHHHh--
Confidence 5677772 22343445567777663 4455555433321 223566666432 23332 345555533
Q ss_pred CCCCCEEEEecCccccCchhHHHHHHHHHHhh------ccCCeE---EEEeecCCC----------------------hh
Q 042861 228 NYNNPVVVIVDDIERCCGSVLSDFILMFSEWV------LKIPVI---LIMGVTTTL----------------------DA 276 (457)
Q Consensus 228 ~~~~~lVvil~D~Esfd~~VL~DlI~llSs~~------~~IP~v---LVfGIATs~----------------------~~ 276 (457)
.+.=||.|+++|..++.|.+-|+.+|..-. .++.|. +|+ +|+. +.
T Consensus 556 --~p~sVlllDEieka~~~v~~~LLq~ld~G~ltd~~g~~vd~rn~iiI~--TsN~g~~~~~~~~~g~~~~~~~~~~~~~ 631 (758)
T PRK11034 556 --HPHAVLLLDEIEKAHPDVFNLLLQVMDNGTLTDNNGRKADFRNVVLVM--TTNAGVRETERKSIGLIHQDNSTDAMEE 631 (758)
T ss_pred --CCCcEEEeccHhhhhHHHHHHHHHHHhcCeeecCCCceecCCCcEEEE--eCCcCHHHHhhcccCcccchhhHHHHHH
Confidence 345699999999999999999999996432 233333 333 2221 23
Q ss_pred HhhhccHHHHhhcc-cceeeeCCcchHHHHHHHHH-------HhcCCCceeeChhhHHHHHHHHHhccCCHHHHHHHH
Q 042861 277 PRNILLSNVLQCLC-PCMFTLGTPSERMDAIIEAV-------LVRQCSGFSISHKVAVFMRNYFVRQDGTITSFIRAL 346 (457)
Q Consensus 277 ~~~~Lp~s~~slL~-~~~F~~~s~~~~l~~I~e~v-------ll~~~~~f~Lg~~v~~~L~d~F~~~d~Sv~~fi~~L 346 (457)
++..++...+.++. +-.|.--+.. -+.+|++.. +......+.++..++.+|.+.=....+....+-+.|
T Consensus 632 ~~~~f~pefl~Rid~ii~f~~L~~~-~l~~I~~~~l~~~~~~l~~~~i~l~~~~~~~~~l~~~~~~~~~GAR~l~r~i 708 (758)
T PRK11034 632 IKKIFTPEFRNRLDNIIWFDHLSTD-VIHQVVDKFIVELQAQLDQKGVSLEVSQEARDWLAEKGYDRAMGARPMARVI 708 (758)
T ss_pred HHHhcCHHHHccCCEEEEcCCCCHH-HHHHHHHHHHHHHHHHHHHCCCCceECHHHHHHHHHhCCCCCCCCchHHHHH
Confidence 45567777778776 4445433333 334444433 233356788999999888765444444443333333
No 82
>PF12731 Mating_N: Mating-type protein beta 1; InterPro: IPR024333 This entry represents a group of homeodomain-containing transcription factor proteins involved in mating [].
Probab=27.13 E-value=90 Score=26.37 Aligned_cols=36 Identities=14% Similarity=0.473 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhh
Q 042861 82 MDAFEVVWSKIESTIKDVLRDINANVFNEIHQWVRD 117 (457)
Q Consensus 82 ~~~y~~~W~~~~~~Iq~il~~~n~~v~~~I~~fI~~ 117 (457)
++.|..-|+.+.+.++.+...+..++.+.|.+|-.-
T Consensus 36 L~~F~~~w~~f~~~~~s~~~~L~~~T~~~~~~fa~~ 71 (95)
T PF12731_consen 36 LESFLSSWSSFDATLQSCHDHLSDETLALLHSFASR 71 (95)
T ss_pred HHHHHHHHHHHHHHHHHhccccCHHHHHHHHHHHHH
Confidence 789999999999999999999999999999988664
No 83
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=27.03 E-value=2.2e+02 Score=29.34 Aligned_cols=69 Identities=12% Similarity=0.160 Sum_probs=46.4
Q ss_pred CEEEEecCccccCchhHHHHHHHHHHhhccCCeEEEEeecCCChhHhhhccHHHHhhcccceeeeCCcchHHHHHH
Q 042861 232 PVVVIVDDIERCCGSVLSDFILMFSEWVLKIPVILIMGVTTTLDAPRNILLSNVLQCLCPCMFTLGTPSERMDAII 307 (457)
Q Consensus 232 ~lVvil~D~Esfd~~VL~DlI~llSs~~~~IP~vLVfGIATs~~~~~~~Lp~s~~slL~~~~F~~~s~~~~l~~I~ 307 (457)
.=||++++++.+|+..-+.|+.++-+.... .+||+ +++.++ .++....++...-.|.-.+..+...-+.
T Consensus 114 ~kV~iiEp~~~Ld~~a~naLLk~LEep~~~--~~~Il-vth~~~----~ll~ti~SRc~~~~~~~~~~~~~~~~L~ 182 (325)
T PRK08699 114 LRVILIHPAESMNLQAANSLLKVLEEPPPQ--VVFLL-VSHAAD----KVLPTIKSRCRKMVLPAPSHEEALAYLR 182 (325)
T ss_pred ceEEEEechhhCCHHHHHHHHHHHHhCcCC--CEEEE-EeCChH----hChHHHHHHhhhhcCCCCCHHHHHHHHH
Confidence 445567999999999999999999887543 34554 666654 4555566666655666655555444443
No 84
>COG1366 SpoIIAA Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) [Signal transduction mechanisms]
Probab=25.52 E-value=2e+02 Score=24.52 Aligned_cols=44 Identities=9% Similarity=0.200 Sum_probs=37.2
Q ss_pred CCEEEEecCccccCchhHHHHHHHHHHhhccCCeEEEEeecCCC
Q 042861 231 NPVVVIVDDIERCCGSVLSDFILMFSEWVLKIPVILIMGVTTTL 274 (457)
Q Consensus 231 ~~lVvil~D~Esfd~~VL~DlI~llSs~~~~IP~vLVfGIATs~ 274 (457)
+.+||-+.+++-+|+..++-|+..+..+...=.-..+.|+.-.+
T Consensus 45 ~~ivIDls~v~~~dS~gl~~L~~~~~~~~~~g~~~~l~~i~p~v 88 (117)
T COG1366 45 RGLVIDLSGVDFMDSAGLGVLVALLKSARLRGVELVLVGIQPEV 88 (117)
T ss_pred cEEEEECCCCceechHHHHHHHHHHHHHHhcCCeEEEEeCCHHH
Confidence 34999999999999999999999999999876767777765443
No 85
>CHL00095 clpC Clp protease ATP binding subunit
Probab=24.41 E-value=1.2e+03 Score=27.26 Aligned_cols=193 Identities=15% Similarity=0.164 Sum_probs=104.9
Q ss_pred EEEecCCCCCCchHHHHHHHHHHhhhcCcEEEEeeCCCCCCCCChhHHHHHHHHHHHcCCC--Cccc-HHHHHHHHHhhc
Q 042861 151 GLVLTKNMEFVDDLLTFEELGRHLKSQGCHVANLSSLDFTAKSGIGGCLRSLLRQFLVAPL--DAAD-ISILASWYREQG 227 (457)
Q Consensus 151 AllltGnin~~dh~~~F~~L~~~L~~~~~~Vv~L~s~dc~~~~~i~~~Lk~ll~qli~~~~--~~yD-l~~L~~Wy~~~~ 227 (457)
+++++|. .-..--.+-..|++.+-..+..++++...++.. +.-+.++++... ..|+ ...|......
T Consensus 541 ~~lf~Gp-~GvGKt~lA~~LA~~l~~~~~~~~~~d~s~~~~--------~~~~~~l~g~~~gyvg~~~~~~l~~~~~~-- 609 (821)
T CHL00095 541 SFLFSGP-TGVGKTELTKALASYFFGSEDAMIRLDMSEYME--------KHTVSKLIGSPPGYVGYNEGGQLTEAVRK-- 609 (821)
T ss_pred EEEEECC-CCCcHHHHHHHHHHHhcCCccceEEEEchhccc--------cccHHHhcCCCCcccCcCccchHHHHHHh--
Confidence 4677882 223444566777777643344567777666642 112334554332 1232 2334444432
Q ss_pred CCCCCEEEEecCccccCchhHHHHHHHHHHhh------ccCCe---EEEEeecCCC------------------------
Q 042861 228 NYNNPVVVIVDDIERCCGSVLSDFILMFSEWV------LKIPV---ILIMGVTTTL------------------------ 274 (457)
Q Consensus 228 ~~~~~lVvil~D~Esfd~~VL~DlI~llSs~~------~~IP~---vLVfGIATs~------------------------ 274 (457)
.+.-||+|+++|..++.|.+-|..+|.... .++.| ++||- |+.
T Consensus 610 --~p~~VvllDeieka~~~v~~~Llq~le~g~~~d~~g~~v~~~~~i~I~T--sn~g~~~i~~~~~~~gf~~~~~~~~~~ 685 (821)
T CHL00095 610 --KPYTVVLFDEIEKAHPDIFNLLLQILDDGRLTDSKGRTIDFKNTLIIMT--SNLGSKVIETNSGGLGFELSENQLSEK 685 (821)
T ss_pred --CCCeEEEECChhhCCHHHHHHHHHHhccCceecCCCcEEecCceEEEEe--CCcchHHHHhhccccCCcccccccccc
Confidence 355799999999999999999999997643 12222 22221 111
Q ss_pred ----------hhHhhhccHHHHhhc-ccceeeeCCcchHHHHHHHHHHh-------cCCCceeeChhhHHHHHHHHHhcc
Q 042861 275 ----------DAPRNILLSNVLQCL-CPCMFTLGTPSERMDAIIEAVLV-------RQCSGFSISHKVAVFMRNYFVRQD 336 (457)
Q Consensus 275 ----------~~~~~~Lp~s~~slL-~~~~F~~~s~~~~l~~I~e~vll-------~~~~~f~Lg~~v~~~L~d~F~~~d 336 (457)
+.+.+.++...++++ .+-.|.--+.. -+.+|++..+. .....+.+++.+..+|.+.=....
T Consensus 686 ~~~~~~~~~~~~~~~~f~peflnRid~ii~F~pL~~~-~l~~Iv~~~l~~l~~rl~~~~i~l~~~~~~~~~La~~~~~~~ 764 (821)
T CHL00095 686 QYKRLSNLVNEELKQFFRPEFLNRLDEIIVFRQLTKN-DVWEIAEIMLKNLFKRLNEQGIQLEVTERIKTLLIEEGYNPL 764 (821)
T ss_pred cHHHHHHHHHHHHHHhcCHHHhccCCeEEEeCCCCHH-HHHHHHHHHHHHHHHHHHHCCcEEEECHHHHHHHHHhcCCCC
Confidence 123344566677777 44556554443 33444443333 334568899999988887633333
Q ss_pred CCHHHHHHHHHHHHHhhhccCccccccc
Q 042861 337 GTITSFIRALKIACSQHFSMEPLSIILK 364 (457)
Q Consensus 337 ~Sv~~fi~~LK~a~M~HFy~nPLSvL~~ 364 (457)
+.. +.|+-++-.+. .+|++-.+.
T Consensus 765 ~GA----R~l~r~i~~~i-~~~l~~~~l 787 (821)
T CHL00095 765 YGA----RPLRRAIMRLL-EDPLAEEVL 787 (821)
T ss_pred CCh----hhHHHHHHHHH-HHHHHHHHH
Confidence 333 33333333333 455555444
No 86
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=23.69 E-value=5.4e+02 Score=26.01 Aligned_cols=106 Identities=22% Similarity=0.257 Sum_probs=60.6
Q ss_pred CEEEEecCccccCchhHHHHHHHHHHhhc---------------cCCeEEEEeecCCChhHhhhccHHHHhhccc-ceee
Q 042861 232 PVVVIVDDIERCCGSVLSDFILMFSEWVL---------------KIPVILIMGVTTTLDAPRNILLSNVLQCLCP-CMFT 295 (457)
Q Consensus 232 ~lVvil~D~Esfd~~VL~DlI~llSs~~~---------------~IP~vLVfGIATs~~~~~~~Lp~s~~slL~~-~~F~ 295 (457)
+-||+|+|++.++..+-.-|..++..+.. .+|=+.++|..|... .++....+++.. -.|.
T Consensus 103 ~~vl~IDEi~~l~~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~~~~li~at~~~~----~l~~~L~sRf~~~~~l~ 178 (328)
T PRK00080 103 GDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAARSIRLDLPPFTLIGATTRAG----LLTSPLRDRFGIVQRLE 178 (328)
T ss_pred CCEEEEecHhhcchHHHHHHHHHHHhcceeeeeccCccccceeecCCCceEEeecCCcc----cCCHHHHHhcCeeeecC
Confidence 45899999999988766555555544321 234344555555543 455555555521 2233
Q ss_pred eCCcchHHHHHHHHHHhcCCCceeeChhhHHHHHHHHHhccCCHHHHHHHHH
Q 042861 296 LGTPSERMDAIIEAVLVRQCSGFSISHKVAVFMRNYFVRQDGTITSFIRALK 347 (457)
Q Consensus 296 ~~s~~~~l~~I~e~vll~~~~~f~Lg~~v~~~L~d~F~~~d~Sv~~fi~~LK 347 (457)
..+. +-+.++++...... ...+++.++.+|.. ....++......++
T Consensus 179 ~~~~-~e~~~il~~~~~~~--~~~~~~~~~~~ia~---~~~G~pR~a~~~l~ 224 (328)
T PRK00080 179 FYTV-EELEKIVKRSARIL--GVEIDEEGALEIAR---RSRGTPRIANRLLR 224 (328)
T ss_pred CCCH-HHHHHHHHHHHHHc--CCCcCHHHHHHHHH---HcCCCchHHHHHHH
Confidence 3332 44566667666554 56789998877754 44455444444444
No 87
>PHA00438 hypothetical protein
Probab=22.77 E-value=1.3e+02 Score=24.86 Aligned_cols=46 Identities=17% Similarity=0.226 Sum_probs=33.9
Q ss_pred HHHHHHHhcCCCceeeChhhHHHHHHHHHhc--------------cCC---HHHHHHHHHHHH
Q 042861 305 AIIEAVLVRQCSGFSISHKVAVFMRNYFVRQ--------------DGT---ITSFIRALKIAC 350 (457)
Q Consensus 305 ~I~e~vll~~~~~f~Lg~~v~~~L~d~F~~~--------------d~S---v~~fi~~LK~a~ 350 (457)
.+++.++-.|+--..+.+.+.+||.-+|... ..| |..|+.+++||-
T Consensus 3 ~pI~~~l~np~DiPdvpraa~eyLqvrfNasYl~~sG~i~~lR~~G~SE~~IaGfl~Gl~yAs 65 (81)
T PHA00438 3 TPIKHLLENPNDIPDVPRAAAEYLQVRFNASYLEQSGEIRLLRQAGYSEAFIAGFLAGLQYAS 65 (81)
T ss_pred chHHHHhcCCcccccccHHHHHHHHHHHhHHHHHHhhhHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 4677888888777788888888888777532 233 778888888874
No 88
>PF10088 DUF2326: Uncharacterized protein conserved in bacteria (DUF2326); InterPro: IPR018760 This domain has no known function.
Probab=22.35 E-value=1.6e+02 Score=26.46 Aligned_cols=56 Identities=13% Similarity=0.198 Sum_probs=45.7
Q ss_pred ccHHHHHHHHHhhcCCCCCEEEEecC--ccccCchhHHHHHHHHHHhhccCCeEEEEeecCC
Q 042861 214 ADISILASWYREQGNYNNPVVVIVDD--IERCCGSVLSDFILMFSEWVLKIPVILIMGVTTT 273 (457)
Q Consensus 214 yDl~~L~~Wy~~~~~~~~~lVvil~D--~Esfd~~VL~DlI~llSs~~~~IP~vLVfGIATs 273 (457)
|||..+.-|+... +.+=+++.| +|..|+..+..++.+..+|..+..+=.|+-|.+.
T Consensus 48 fDla~~~~~~~~~----~~~~FLiHDslf~~vD~rq~~~~l~~~~~~~~~~~~QyIvtin~d 105 (140)
T PF10088_consen 48 FDLALLRLAYTNN----TFPPFLIHDSLFEGVDDRQKANLLNLANEYSEESGFQYIVTINSD 105 (140)
T ss_pred HHHHHHHHHHhcC----CCCCEEEeccccccCCHHHHHHHHHHHHHHHhhcCceEEEEEEhh
Confidence 8999999888654 345567788 7899999999999999999988888888777543
No 89
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=22.21 E-value=1.2e+03 Score=26.62 Aligned_cols=107 Identities=15% Similarity=0.196 Sum_probs=66.0
Q ss_pred CCCEEEEecCccccCchhHHHHHHHHHHhhccCCeEEEEeecCCChhHhhhccHHHHhhcccceeeeCCcc-hHHHHHHH
Q 042861 230 NNPVVVIVDDIERCCGSVLSDFILMFSEWVLKIPVILIMGVTTTLDAPRNILLSNVLQCLCPCMFTLGTPS-ERMDAIIE 308 (457)
Q Consensus 230 ~~~lVvil~D~Esfd~~VL~DlI~llSs~~~~IP~vLVfGIATs~~~~~~~Lp~s~~slL~~~~F~~~s~~-~~l~~I~e 308 (457)
.+.-|+||++.+.++....+.|+..|-+.-..+.|+|+ +|.+. .|+...+++.. .|.+..-+ +-+...++
T Consensus 118 g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~---Tt~~~----kLl~TI~SRC~--~~~f~~Ls~~ei~~~L~ 188 (647)
T PRK07994 118 GRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLA---TTDPQ----KLPVTILSRCL--QFHLKALDVEQIRQQLE 188 (647)
T ss_pred CCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEe---cCCcc----ccchHHHhhhe--EeeCCCCCHHHHHHHHH
Confidence 35669999999999999999999988886665555443 55543 56666677643 45544443 33334444
Q ss_pred HHHhcCCCceeeChhhHHHHHHHHHhccCCHHHHHHHHHHHH
Q 042861 309 AVLVRQCSGFSISHKVAVFMRNYFVRQDGTITSFIRALKIAC 350 (457)
Q Consensus 309 ~vll~~~~~f~Lg~~v~~~L~d~F~~~d~Sv~~fi~~LK~a~ 350 (457)
.++... ...+....+..| ....++|+...++-+.-++
T Consensus 189 ~il~~e--~i~~e~~aL~~I---a~~s~Gs~R~Al~lldqai 225 (647)
T PRK07994 189 HILQAE--QIPFEPRALQLL---ARAADGSMRDALSLTDQAI 225 (647)
T ss_pred HHHHHc--CCCCCHHHHHHH---HHHcCCCHHHHHHHHHHHH
Confidence 444333 234455555444 3456777776666665443
No 90
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=22.04 E-value=8.6e+02 Score=24.83 Aligned_cols=84 Identities=13% Similarity=0.116 Sum_probs=52.9
Q ss_pred cHHHHHHHHHhhcCCCCCEEEEecCccccCchhHHHHHHHHHHhhccCCeEEEEeecCCChhHhhhccHHHHhhccccee
Q 042861 215 DISILASWYREQGNYNNPVVVIVDDIERCCGSVLSDFILMFSEWVLKIPVILIMGVTTTLDAPRNILLSNVLQCLCPCMF 294 (457)
Q Consensus 215 Dl~~L~~Wy~~~~~~~~~lVvil~D~Esfd~~VL~DlI~llSs~~~~IP~vLVfGIATs~~~~~~~Lp~s~~slL~~~~F 294 (457)
+++.+..+..........=||||++.|.++..--+-|+.+|-+.- + -+||| +++.+ ..|.....|+...-.|
T Consensus 108 ~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp-~--~~fIL-i~~~~----~~Ll~TI~SRcq~i~f 179 (314)
T PRK07399 108 QIREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPG-N--GTLIL-IAPSP----ESLLPTIVSRCQIIPF 179 (314)
T ss_pred HHHHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCC-C--CeEEE-EECCh----HhCcHHHHhhceEEec
Confidence 344555555433223456699999999999999999999998765 2 24444 44444 3666667777665556
Q ss_pred eeCCcchHHHHH
Q 042861 295 TLGTPSERMDAI 306 (457)
Q Consensus 295 ~~~s~~~~l~~I 306 (457)
.-.+..+..+.+
T Consensus 180 ~~l~~~~~~~~L 191 (314)
T PRK07399 180 YRLSDEQLEQVL 191 (314)
T ss_pred CCCCHHHHHHHH
Confidence 555554443333
No 91
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=21.77 E-value=8.2e+02 Score=24.51 Aligned_cols=65 Identities=14% Similarity=0.149 Sum_probs=41.6
Q ss_pred CCEEEEecCccccCchhHHHHHHHHHHhhccCCeEEEEeecCCChhHhhhccHHHHhhcccceeeeCCcchH
Q 042861 231 NPVVVIVDDIERCCGSVLSDFILMFSEWVLKIPVILIMGVTTTLDAPRNILLSNVLQCLCPCMFTLGTPSER 302 (457)
Q Consensus 231 ~~lVvil~D~Esfd~~VL~DlI~llSs~~~~IP~vLVfGIATs~~~~~~~Lp~s~~slL~~~~F~~~s~~~~ 302 (457)
..=||||+|.|.++..--+.|+..|-+--+..-|+ | +++.++ .|+....++...-.|.-.+..+.
T Consensus 93 ~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~i--l-~~~~~~----~ll~TI~SRc~~~~~~~~~~~~~ 157 (313)
T PRK05564 93 DKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFII--L-LCENLE----QILDTIKSRCQIYKLNRLSKEEI 157 (313)
T ss_pred CceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEE--E-EeCChH----hCcHHHHhhceeeeCCCcCHHHH
Confidence 45688999999999999888887776543333333 3 344444 55556677666555655555443
No 92
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=21.10 E-value=3.4e+02 Score=24.06 Aligned_cols=82 Identities=12% Similarity=0.220 Sum_probs=46.3
Q ss_pred hhHHHHHHHHHHHhhhcccccccccchhhhccccCccccccccCccceEEEecCCCCCCchHHHHHHHHHHhhh-cCcEE
Q 042861 103 INANVFNEIHQWVRDSFSTIRSFGMLTFREATQAFPIVTDASSKQLFTGLVLTKNMEFVDDLLTFEELGRHLKS-QGCHV 181 (457)
Q Consensus 103 ~n~~v~~~I~~fI~~~~~~~~s~~~p~~~~a~~~~~~~~~~~~~~IPTAllltGnin~~dh~~~F~~L~~~L~~-~~~~V 181 (457)
.+...|+++..|+....... ....+|..++.+. ....+......+....+.. ..+.+
T Consensus 86 ~~~~s~~~~~~~~~~~~~~~---------------------~~~~~p~iiv~nK-~Dl~~~~~~~~~~~~~~~~~~~~~~ 143 (170)
T cd04115 86 TNMASFHSLPSWIEECEQHS---------------------LPNEVPRILVGNK-CDLREQIQVPTDLAQRFADAHSMPL 143 (170)
T ss_pred CCHHHHHhHHHHHHHHHHhc---------------------CCCCCCEEEEEEC-ccchhhcCCCHHHHHHHHHHcCCcE
Confidence 35677888888876643210 1135888888776 2222111112222333322 24667
Q ss_pred EEeeCCCCCCCCChhHHHHHHHHHH
Q 042861 182 ANLSSLDFTAKSGIGGCLRSLLRQF 206 (457)
Q Consensus 182 v~L~s~dc~~~~~i~~~Lk~ll~ql 206 (457)
+..+++++.++.+++..+..+++++
T Consensus 144 ~e~Sa~~~~~~~~i~~~f~~l~~~~ 168 (170)
T cd04115 144 FETSAKDPSENDHVEAIFMTLAHKL 168 (170)
T ss_pred EEEeccCCcCCCCHHHHHHHHHHHh
Confidence 7788888765567777777777654
No 93
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=20.44 E-value=9.6e+02 Score=24.78 Aligned_cols=106 Identities=15% Similarity=0.244 Sum_probs=67.0
Q ss_pred CCEEEEecCccccCchhHHHHHHHHHHhhccCCeEEEEeecCCChhHhhhccHHHHhhcccceeeeCCcc-hHHHHHHHH
Q 042861 231 NPVVVIVDDIERCCGSVLSDFILMFSEWVLKIPVILIMGVTTTLDAPRNILLSNVLQCLCPCMFTLGTPS-ERMDAIIEA 309 (457)
Q Consensus 231 ~~lVvil~D~Esfd~~VL~DlI~llSs~~~~IP~vLVfGIATs~~~~~~~Lp~s~~slL~~~~F~~~s~~-~~l~~I~e~ 309 (457)
..-||+|++.+.++....+.|+..+-..-..+.| || ++|.++ .++....++.. .|.+.+.+ +-+...++.
T Consensus 119 ~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~f--Il-~t~~~~----~l~~tI~SRc~--~~~~~~l~~~el~~~L~~ 189 (363)
T PRK14961 119 RFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKF--IL-ATTDVE----KIPKTILSRCL--QFKLKIISEEKIFNFLKY 189 (363)
T ss_pred CceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEE--EE-EcCChH----hhhHHHHhhce--EEeCCCCCHHHHHHHHHH
Confidence 4569999999999998888888777665444433 33 234433 35555565543 45555442 334445555
Q ss_pred HHhcCCCceeeChhhHHHHHHHHHhccCCHHHHHHHHHHHH
Q 042861 310 VLVRQCSGFSISHKVAVFMRNYFVRQDGTITSFIRALKIAC 350 (457)
Q Consensus 310 vll~~~~~f~Lg~~v~~~L~d~F~~~d~Sv~~fi~~LK~a~ 350 (457)
++... +..+++..++.+.. ..+.++...+..++-++
T Consensus 190 ~~~~~--g~~i~~~al~~ia~---~s~G~~R~al~~l~~~~ 225 (363)
T PRK14961 190 ILIKE--SIDTDEYALKLIAY---HAHGSMRDALNLLEHAI 225 (363)
T ss_pred HHHHc--CCCCCHHHHHHHHH---HcCCCHHHHHHHHHHHH
Confidence 55444 45678888776654 45678888888776554
No 94
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=20.40 E-value=1.2e+03 Score=25.95 Aligned_cols=105 Identities=14% Similarity=0.175 Sum_probs=64.7
Q ss_pred CEEEEecCccccCchhHHHHHHHHHHhhccCCeEEEEeecCCChhHhhhccHHHHhhcccceeeeCCcchHHHHHHHHHH
Q 042861 232 PVVVIVDDIERCCGSVLSDFILMFSEWVLKIPVILIMGVTTTLDAPRNILLSNVLQCLCPCMFTLGTPSERMDAIIEAVL 311 (457)
Q Consensus 232 ~lVvil~D~Esfd~~VL~DlI~llSs~~~~IP~vLVfGIATs~~~~~~~Lp~s~~slL~~~~F~~~s~~~~l~~I~e~vl 311 (457)
.=|+||++.+.++..-.+.|+..|-+.-....|+| ++|.+ +.|+....++...-.|.-.+..+ +...+..++
T Consensus 120 ~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl---~t~~~----~kl~~tI~SRc~~~~f~~l~~~~-i~~~L~~i~ 191 (576)
T PRK14965 120 YKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIF---ATTEP----HKVPITILSRCQRFDFRRIPLQK-IVDRLRYIA 191 (576)
T ss_pred ceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEE---EeCCh----hhhhHHHHHhhhhhhcCCCCHHH-HHHHHHHHH
Confidence 44788999999999988888887777655444333 33444 35666666665544454343333 333334444
Q ss_pred hcCCCceeeChhhHHHHHHHHHhccCCHHHHHHHHHHH
Q 042861 312 VRQCSGFSISHKVAVFMRNYFVRQDGTITSFIRALKIA 349 (457)
Q Consensus 312 l~~~~~f~Lg~~v~~~L~d~F~~~d~Sv~~fi~~LK~a 349 (457)
... ...+.+..+..| -...+.++...++.|+-+
T Consensus 192 ~~e--gi~i~~~al~~l---a~~a~G~lr~al~~Ldql 224 (576)
T PRK14965 192 DQE--GISISDAALALV---ARKGDGSMRDSLSTLDQV 224 (576)
T ss_pred HHh--CCCCCHHHHHHH---HHHcCCCHHHHHHHHHHH
Confidence 443 456778877655 345567777777777543
No 95
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=20.27 E-value=1.2e+03 Score=25.88 Aligned_cols=123 Identities=15% Similarity=0.185 Sum_probs=72.7
Q ss_pred HHHHHHHHHhhcCCCCCEEEEecCccccCchhHHHHHHHHHHhhccCCeEEEEeecCCChhHhhhccHHHHhhcccceee
Q 042861 216 ISILASWYREQGNYNNPVVVIVDDIERCCGSVLSDFILMFSEWVLKIPVILIMGVTTTLDAPRNILLSNVLQCLCPCMFT 295 (457)
Q Consensus 216 l~~L~~Wy~~~~~~~~~lVvil~D~Esfd~~VL~DlI~llSs~~~~IP~vLVfGIATs~~~~~~~Lp~s~~slL~~~~F~ 295 (457)
+..+.++........+.-|+||++.+.+.....+.|+..+- ..|-..+|=++|+- . ..++....++...-.|.
T Consensus 104 ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLE----epp~~~ifIlatt~--~-~ki~~tI~SRc~~~~f~ 176 (559)
T PRK05563 104 IRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLE----EPPAHVIFILATTE--P-HKIPATILSRCQRFDFK 176 (559)
T ss_pred HHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhc----CCCCCeEEEEEeCC--h-hhCcHHHHhHheEEecC
Confidence 44555554322223456799999999999988887776554 44533333334431 2 35666666666543444
Q ss_pred eCCcchHHHHHHHHHHhcCCCceeeChhhHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 042861 296 LGTPSERMDAIIEAVLVRQCSGFSISHKVAVFMRNYFVRQDGTITSFIRALKIACS 351 (457)
Q Consensus 296 ~~s~~~~l~~I~e~vll~~~~~f~Lg~~v~~~L~d~F~~~d~Sv~~fi~~LK~a~M 351 (457)
-.+. .-+...++.++... ...+.+..++.|.. ..+.++...++.|+-++.
T Consensus 177 ~~~~-~ei~~~L~~i~~~e--gi~i~~~al~~ia~---~s~G~~R~al~~Ldq~~~ 226 (559)
T PRK05563 177 RISV-EDIVERLKYILDKE--GIEYEDEALRLIAR---AAEGGMRDALSILDQAIS 226 (559)
T ss_pred CCCH-HHHHHHHHHHHHHc--CCCCCHHHHHHHHH---HcCCCHHHHHHHHHHHHH
Confidence 3333 34444555555544 55678887776655 456777777777775543
No 96
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=20.10 E-value=2.8e+02 Score=24.10 Aligned_cols=66 Identities=12% Similarity=0.136 Sum_probs=47.8
Q ss_pred CEEEEecCccccCchhHHHHHHHHHHhhccCCeEEEEeecCCChh--HhhhccHHHHhhcccceeeeCC
Q 042861 232 PVVVIVDDIERCCGSVLSDFILMFSEWVLKIPVILIMGVTTTLDA--PRNILLSNVLQCLCPCMFTLGT 298 (457)
Q Consensus 232 ~lVvil~D~Esfd~~VL~DlI~llSs~~~~IP~vLVfGIATs~~~--~~~~Lp~s~~slL~~~~F~~~s 298 (457)
.-.++|+|.|..+...-..|...+...- +-.+-+|+.-+++++. =+..+......+|..-.+.+++
T Consensus 70 ~gtL~l~~i~~L~~~~Q~~L~~~l~~~~-~~~~RlI~ss~~~l~~l~~~~~~~~~L~~~l~~~~i~lPp 137 (138)
T PF14532_consen 70 GGTLYLKNIDRLSPEAQRRLLDLLKRQE-RSNVRLIASSSQDLEELVEEGRFSPDLYYRLSQLEIHLPP 137 (138)
T ss_dssp TSEEEEECGCCS-HHHHHHHHHHHHHCT-TTTSEEEEEECC-CCCHHHHSTHHHHHHHHCSTCEEEE--
T ss_pred CCEEEECChHHCCHHHHHHHHHHHHhcC-CCCeEEEEEeCCCHHHHhhccchhHHHHHHhCCCEEeCCC
Confidence 4589999999999999999998888742 4455777777777753 3456788888888887777764
Done!