Query 042861
Match_columns 457
No_of_seqs 149 out of 198
Neff 6.0
Searched_HMMs 29240
Date Mon Mar 25 18:06:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042861.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042861hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3te6_A Regulatory protein SIR3 97.1 0.044 1.5E-06 54.8 19.7 194 149-350 45-283 (318)
2 1fnn_A CDC6P, cell division co 96.7 0.34 1.2E-05 47.6 22.6 193 151-352 46-253 (389)
3 2v1u_A Cell division control p 95.8 0.9 3.1E-05 44.3 20.1 194 149-351 44-254 (387)
4 2qby_B CDC6 homolog 3, cell di 95.3 1.4 4.6E-05 43.3 19.6 190 149-351 45-250 (384)
5 2qby_A CDC6 homolog 1, cell di 95.0 0.74 2.5E-05 44.8 16.2 193 149-351 45-250 (386)
6 3u61_B DNA polymerase accessor 93.1 3.9 0.00013 39.4 17.1 165 147-350 46-220 (324)
7 1w5s_A Origin recognition comp 92.2 9.3 0.00032 37.5 18.9 193 149-351 50-271 (412)
8 2chg_A Replication factor C sm 91.9 6.1 0.00021 34.5 21.1 166 152-351 41-209 (226)
9 4fcw_A Chaperone protein CLPB; 90.9 11 0.00037 35.6 18.5 189 150-351 48-276 (311)
10 3bos_A Putative DNA replicatio 88.5 4.3 0.00015 36.4 11.6 116 231-352 104-223 (242)
11 1sxj_B Activator 1 37 kDa subu 83.1 30 0.001 32.4 18.5 106 231-350 107-213 (323)
12 1iqp_A RFCS; clamp loader, ext 83.0 31 0.0011 32.4 18.3 107 230-350 109-216 (327)
13 3syl_A Protein CBBX; photosynt 82.5 7.7 0.00026 36.7 10.6 177 148-354 66-263 (309)
14 3pvs_A Replication-associated 80.4 43 0.0015 34.3 16.0 111 230-351 105-220 (447)
15 2chq_A Replication factor C sm 80.2 21 0.00074 33.4 12.8 108 230-351 101-209 (319)
16 3uk6_A RUVB-like 2; hexameric 80.0 16 0.00056 35.3 12.2 114 232-354 190-311 (368)
17 1sxj_A Activator 1 95 kDa subu 79.2 57 0.0019 33.8 16.7 174 148-351 76-257 (516)
18 1a5t_A Delta prime, HOLB; zinc 76.7 30 0.001 33.5 13.0 61 230-299 107-167 (334)
19 2qp9_X Vacuolar protein sortin 76.0 30 0.001 34.0 12.9 113 231-352 143-267 (355)
20 2bjv_A PSP operon transcriptio 71.7 34 0.0012 31.5 11.4 117 233-351 102-238 (265)
21 3pxi_A Negative regulator of g 70.4 96 0.0033 33.6 16.3 174 151-349 523-720 (758)
22 3eie_A Vacuolar protein sortin 69.9 36 0.0012 32.7 11.6 114 231-353 110-235 (322)
23 1g8p_A Magnesium-chelatase 38 68.0 21 0.00071 34.2 9.3 118 232-354 145-303 (350)
24 1ofh_A ATP-dependent HSL prote 66.4 33 0.0011 31.9 10.2 187 147-351 48-271 (310)
25 1njg_A DNA polymerase III subu 65.8 67 0.0023 27.8 19.6 107 230-350 125-232 (250)
26 1sxj_E Activator 1 40 kDa subu 64.9 98 0.0034 29.5 17.9 108 231-352 134-243 (354)
27 1jr3_A DNA polymerase III subu 64.0 1E+02 0.0035 29.4 18.3 107 230-350 118-225 (373)
28 1l8q_A Chromosomal replication 62.7 1.1E+02 0.0036 29.1 22.2 173 150-351 38-213 (324)
29 3pfi_A Holliday junction ATP-d 61.3 82 0.0028 29.9 12.2 110 231-350 106-231 (338)
30 2z4s_A Chromosomal replication 59.6 1.5E+02 0.0052 29.9 18.3 178 149-353 130-313 (440)
31 1sxj_D Activator 1 41 kDa subu 59.1 83 0.0028 29.8 11.7 176 152-351 61-240 (353)
32 1r6b_X CLPA protein; AAA+, N-t 58.9 52 0.0018 35.7 11.3 120 231-351 557-713 (758)
33 3d8b_A Fidgetin-like protein 1 57.3 1.4E+02 0.005 28.9 15.8 176 147-354 115-303 (357)
34 3vfd_A Spastin; ATPase, microt 54.2 1.7E+02 0.0057 28.7 14.9 115 231-354 207-334 (389)
35 2r44_A Uncharacterized protein 54.1 46 0.0016 31.7 9.0 115 233-350 111-274 (331)
36 1xwi_A SKD1 protein; VPS4B, AA 53.8 1.6E+02 0.0054 28.3 17.7 172 148-350 44-227 (322)
37 2zan_A Vacuolar protein sortin 51.6 65 0.0022 32.7 10.0 113 231-351 227-350 (444)
38 1jr3_D DNA polymerase III, del 48.2 1.9E+02 0.0065 27.6 13.4 112 231-351 76-190 (343)
39 3hws_A ATP-dependent CLP prote 44.2 1E+02 0.0035 29.9 9.8 78 281-358 239-327 (363)
40 1hqc_A RUVB; extended AAA-ATPa 43.7 1E+02 0.0034 28.9 9.4 110 231-350 90-215 (324)
41 1sxj_C Activator 1 40 kDa subu 39.8 2.5E+02 0.0087 26.7 18.7 168 147-349 45-215 (340)
42 2cx6_A Hypothetical protein YH 37.0 1.5E+02 0.005 23.5 7.9 79 181-263 3-81 (90)
43 1jbk_A CLPB protein; beta barr 36.0 1.6E+02 0.0054 24.4 8.6 15 230-244 114-128 (195)
44 2p65_A Hypothetical protein PF 35.6 29 0.00099 29.3 3.7 60 230-290 114-179 (187)
45 2gno_A DNA polymerase III, gam 33.9 3.2E+02 0.011 26.1 12.7 71 231-311 82-152 (305)
46 1qvr_A CLPB protein; coiled co 31.8 5.5E+02 0.019 28.1 18.6 187 150-351 589-817 (854)
47 1um8_A ATP-dependent CLP prote 29.9 3.4E+02 0.011 26.2 11.0 78 280-358 255-344 (376)
48 1ojl_A Transcriptional regulat 28.5 3.8E+02 0.013 25.3 11.6 118 233-352 98-234 (304)
49 2c9o_A RUVB-like 1; hexameric 24.7 2E+02 0.0067 29.1 8.3 123 218-349 282-413 (456)
50 1d2n_A N-ethylmaleimide-sensit 21.9 2.2E+02 0.0075 26.0 7.5 111 231-350 124-246 (272)
51 1y7q_A AW-1, zinc finger prote 20.2 50 0.0017 27.3 2.2 16 438-453 32-47 (98)
No 1
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=97.06 E-value=0.044 Score=54.75 Aligned_cols=194 Identities=10% Similarity=0.123 Sum_probs=128.1
Q ss_pred ceEEEecCCCCCCchHHHHHHHHHHhhhc-------CcEEEEeeCCCCCCCCChhHHHHHHHHHHHcCCC-CcccHHHHH
Q 042861 149 FTGLVLTKNMEFVDDLLTFEELGRHLKSQ-------GCHVANLSSLDFTAKSGIGGCLRSLLRQFLVAPL-DAADISILA 220 (457)
Q Consensus 149 PTAllltGnin~~dh~~~F~~L~~~L~~~-------~~~Vv~L~s~dc~~~~~i~~~Lk~ll~qli~~~~-~~yDl~~L~ 220 (457)
|..+++.|- -=+.--.+.+.+...|+.. ...++.++...+. +-...++.+.++|.+... ...-++.|.
T Consensus 45 ~~~lli~Gp-PGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~---t~~~~~~~I~~~L~g~~~~~~~~~~~L~ 120 (318)
T 3te6_A 45 NKLFYITNA-DDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELA---GMDALYEKIWFAISKENLCGDISLEALN 120 (318)
T ss_dssp CCEEEEECC-CSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC-----HHHHHHHHHHHSCCC--CCCCHHHHH
T ss_pred CCeEEEECC-CCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccC---CHHHHHHHHHHHhcCCCCCchHHHHHHH
Confidence 446677761 1134445667777777532 2367888876665 566788999999865432 223477888
Q ss_pred HHHHhh-cCCCCCEEEEecCccccCchhHHHHHHHHHHhhc--cCCeEEEEeecCCChhHhhhccHHHHhhcccceeeeC
Q 042861 221 SWYREQ-GNYNNPVVVIVDDIERCCGSVLSDFILMFSEWVL--KIPVILIMGVTTTLDAPRNILLSNVLQCLCPCMFTLG 297 (457)
Q Consensus 221 ~Wy~~~-~~~~~~lVvil~D~Esfd~~VL~DlI~llSs~~~--~IP~vLVfGIATs~~~~~~~Lp~s~~slL~~~~F~~~ 297 (457)
..+... .....++||+|++++.+. =+|++.-|..|.. .-+ +.|+||+.+.+.....|++.+.+++..+.|.+.
T Consensus 121 ~~f~~~~~~~~~~~ii~lDE~d~l~---~q~~L~~l~~~~~~~~s~-~~vI~i~n~~d~~~~~L~~~v~SR~~~~~i~F~ 196 (318)
T 3te6_A 121 FYITNVPKAKKRKTLILIQNPENLL---SEKILQYFEKWISSKNSK-LSIICVGGHNVTIREQINIMPSLKAHFTEIKLN 196 (318)
T ss_dssp HHHHHSCGGGSCEEEEEEECCSSSC---CTHHHHHHHHHHHCSSCC-EEEEEECCSSCCCHHHHHTCHHHHTTEEEEECC
T ss_pred HHHHHhhhccCCceEEEEecHHHhh---cchHHHHHHhcccccCCc-EEEEEEecCcccchhhcchhhhccCCceEEEeC
Confidence 877653 123568999999999996 2555555555642 223 467899999898888888889999987777776
Q ss_pred Ccc-hHHHHHHHHHHhcCC-C--------------------------------ceeeChhhHHHHHHHHHhccCCHHHHH
Q 042861 298 TPS-ERMDAIIEAVLVRQC-S--------------------------------GFSISHKVAVFMRNYFVRQDGTITSFI 343 (457)
Q Consensus 298 s~~-~~l~~I~e~vll~~~-~--------------------------------~f~Lg~~v~~~L~d~F~~~d~Sv~~fi 343 (457)
+-+ +-+..|++.-+.... . ...+.+.+++++..+--..+..+..-+
T Consensus 197 pYt~~el~~Il~~Rl~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ai~~~A~~vA~~~GD~R~Al 276 (318)
T 3te6_A 197 KVDKNELQQMIITRLKSLLKPFHVKVNDKKEMTIYNNIREGQNQKIPDNVIVINHKINNKITQLIAKNVANVSGSTEKAF 276 (318)
T ss_dssp CCCHHHHHHHHHHHHHHHCCCEEEEECTTCCEEECCCC--------CTTEEEECEECCHHHHHHHHHHHHHHHCSHHHHH
T ss_pred CCCHHHHHHHHHHHHHhhhccccccccccccccccccccccccccccccccccccccCHHHHHHHHHHHHhhCChHHHHH
Confidence 655 444555544443321 1 125899999999988777788877777
Q ss_pred HHHHHHH
Q 042861 344 RALKIAC 350 (457)
Q Consensus 344 ~~LK~a~ 350 (457)
..++.|.
T Consensus 277 ~ilr~A~ 283 (318)
T 3te6_A 277 KICEAAV 283 (318)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7776665
No 2
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=96.68 E-value=0.34 Score=47.59 Aligned_cols=193 Identities=13% Similarity=0.094 Sum_probs=120.6
Q ss_pred EEEecCCCCCCchHHHHHHHHHHhhhc-CcEEEEeeCCCCCCCCChhHHHHHHHHHHHcCCCC-ccc----HHHHHHHHH
Q 042861 151 GLVLTKNMEFVDDLLTFEELGRHLKSQ-GCHVANLSSLDFTAKSGIGGCLRSLLRQFLVAPLD-AAD----ISILASWYR 224 (457)
Q Consensus 151 AllltGnin~~dh~~~F~~L~~~L~~~-~~~Vv~L~s~dc~~~~~i~~~Lk~ll~qli~~~~~-~yD----l~~L~~Wy~ 224 (457)
.+++.| -+=+.-..+...+...+... +..++.++..++. +....++.++.++-..... ..+ ++.+..+..
T Consensus 46 ~~li~G-~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~---~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~ 121 (389)
T 1fnn_A 46 RATLLG-RPGTGKTVTLRKLWELYKDKTTARFVYINGFIYR---NFTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLR 121 (389)
T ss_dssp EEEEEC-CTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCC---SHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHH
T ss_pred eEEEEC-CCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCC---CHHHHHHHHHHHhCccCCCCCCCHHHHHHHHHHHHh
Confidence 456666 22245566778888888765 5677777755554 4556667766665321111 111 334444443
Q ss_pred hhcCCCCCEEEEecCccccCchhHHHHHHHHHHhhc--cCCeEEEEeecCCChhHhhhccHHHHhhcccceeeeCCcc-h
Q 042861 225 EQGNYNNPVVVIVDDIERCCGSVLSDFILMFSEWVL--KIPVILIMGVTTTLDAPRNILLSNVLQCLCPCMFTLGTPS-E 301 (457)
Q Consensus 225 ~~~~~~~~lVvil~D~Esfd~~VL~DlI~llSs~~~--~IP~vLVfGIATs~~~~~~~Lp~s~~slL~~~~F~~~s~~-~ 301 (457)
.. ..|.||+|+|++.++..++..|..++..+.. +-++.+| +++...+ +...+.....+++....+.+++-. +
T Consensus 122 ~~---~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI-~~~~~~~-~~~~l~~~~~~r~~~~~i~~~pl~~~ 196 (389)
T 1fnn_A 122 ER---DLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALV-IVGHNDA-VLNNLDPSTRGIMGKYVIRFSPYTKD 196 (389)
T ss_dssp HT---TCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEE-EEESSTH-HHHTSCHHHHHHHTTCEEECCCCBHH
T ss_pred hc---CCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEE-EEECCch-HHHHhCHHhhhcCCCceEEeCCCCHH
Confidence 32 4689999999999999999988888766543 1344333 4455555 344566677777777667776644 4
Q ss_pred HHHHHHHHHHhcCCCceeeChhhHHHHHHHHHhc------cCCHHHHHHHHHHHHHh
Q 042861 302 RMDAIIEAVLVRQCSGFSISHKVAVFMRNYFVRQ------DGTITSFIRALKIACSQ 352 (457)
Q Consensus 302 ~l~~I~e~vll~~~~~f~Lg~~v~~~L~d~F~~~------d~Sv~~fi~~LK~a~M~ 352 (457)
-+..++...+......-.+++.+++.+....... ...+...+..++.|...
T Consensus 197 ~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~~~ 253 (389)
T 1fnn_A 197 QIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRSAYA 253 (389)
T ss_dssp HHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHH
Confidence 4556666555431112367888888887777554 78888888888877653
No 3
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=95.80 E-value=0.9 Score=44.28 Aligned_cols=194 Identities=11% Similarity=0.063 Sum_probs=117.1
Q ss_pred ceEEEecCCCCCCchHHHHHHHHHHhhhc------CcEEEEeeCCCCCCCCChhHHHHHHHHHHHcCCCC-c---cc-HH
Q 042861 149 FTGLVLTKNMEFVDDLLTFEELGRHLKSQ------GCHVANLSSLDFTAKSGIGGCLRSLLRQFLVAPLD-A---AD-IS 217 (457)
Q Consensus 149 PTAllltGnin~~dh~~~F~~L~~~L~~~------~~~Vv~L~s~dc~~~~~i~~~Lk~ll~qli~~~~~-~---yD-l~ 217 (457)
+..+++.| -.=+.-..+...+...+... +..++.++...+. +....+..++.++-..... . .+ ++
T Consensus 44 ~~~vll~G-~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 119 (387)
T 2v1u_A 44 PSNALLYG-LTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRE---TPYRVASAIAEAVGVRVPFTGLSVGEVYE 119 (387)
T ss_dssp CCCEEECB-CTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSC---SHHHHHHHHHHHHSCCCCSSCCCHHHHHH
T ss_pred CCcEEEEC-CCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCC---CHHHHHHHHHHHhCCCCCCCCCCHHHHHH
Confidence 44677777 22244455667777777442 4677778766654 5667778888777332111 1 12 33
Q ss_pred HHHHHHHhhcCCCCCEEEEecCccccCchh-HHHHHHHHHHhhcc----CCeEEEEeecCCChhHhhhccHHHHhhcccc
Q 042861 218 ILASWYREQGNYNNPVVVIVDDIERCCGSV-LSDFILMFSEWVLK----IPVILIMGVTTTLDAPRNILLSNVLQCLCPC 292 (457)
Q Consensus 218 ~L~~Wy~~~~~~~~~lVvil~D~Esfd~~V-L~DlI~llSs~~~~----IP~vLVfGIATs~~~~~~~Lp~s~~slL~~~ 292 (457)
.+..+.. ....++||+|+|++.+...- -++.+.-+-.|... -++ .++|+++..+ +...+.....+++...
T Consensus 120 ~l~~~l~---~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~-~~I~~t~~~~-~~~~l~~~l~~r~~~~ 194 (387)
T 2v1u_A 120 RLVKRLS---RLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWV-SLVGITNSLG-FVENLEPRVKSSLGEV 194 (387)
T ss_dssp HHHHHHT---TSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----C-EEEEECSCST-TSSSSCHHHHTTTTSE
T ss_pred HHHHHHh---ccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceE-EEEEEECCCc-hHhhhCHHHHhcCCCe
Confidence 4444432 23468999999999997652 34444444455543 333 4445555554 3345677777777665
Q ss_pred eeeeCCcc-hHHHHHHHHHHhcCCCceeeChhhHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 042861 293 MFTLGTPS-ERMDAIIEAVLVRQCSGFSISHKVAVFMRNYFVRQDGTITSFIRALKIACS 351 (457)
Q Consensus 293 ~F~~~s~~-~~l~~I~e~vll~~~~~f~Lg~~v~~~L~d~F~~~d~Sv~~fi~~LK~a~M 351 (457)
.+.+++.. +-+..+++..+.....+..+.+.+++.+.........++...+..++.|..
T Consensus 195 ~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~~l~~a~~ 254 (387)
T 2v1u_A 195 ELVFPPYTAPQLRDILETRAEEAFNPGVLDPDVVPLCAALAAREHGDARRALDLLRVAGE 254 (387)
T ss_dssp ECCBCCCCHHHHHHHHHHHHHHHBCTTTBCSSHHHHHHHHHHSSSCCHHHHHHHHHHHHH
T ss_pred EEeeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 66665544 455566666654321245678888888877777666888888888887754
No 4
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.34 E-value=1.4 Score=43.27 Aligned_cols=190 Identities=10% Similarity=0.100 Sum_probs=112.3
Q ss_pred ceEEEecCCCCCCchHHHHHHHHHHhhhc--------CcEEEEeeCCCCCCCCChhHHHHHHHHHHHcCCCC--ccc---
Q 042861 149 FTGLVLTKNMEFVDDLLTFEELGRHLKSQ--------GCHVANLSSLDFTAKSGIGGCLRSLLRQFLVAPLD--AAD--- 215 (457)
Q Consensus 149 PTAllltGnin~~dh~~~F~~L~~~L~~~--------~~~Vv~L~s~dc~~~~~i~~~Lk~ll~qli~~~~~--~yD--- 215 (457)
|..+++.| -.=+.--.+...+...+... +..++.++..++.. +....++.++.++.+.... ..+
T Consensus 45 ~~~vll~G-~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~~~~~l~~~l~~~~~~~~~~~~~~ 121 (384)
T 2qby_B 45 KFSNLFLG-LTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGG--TPQAVLSSLAGKLTGFSVPKHGINLGE 121 (384)
T ss_dssp CCEEEEEE-CTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCS--CHHHHHHHHHHHHHCSCCCSSSSCTHH
T ss_pred CCcEEEEC-CCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCC--CHHHHHHHHHHHhcCCCCCCCCCCHHH
Confidence 44777777 22234455667777777443 56777777554431 3456777777777543221 111
Q ss_pred -HHHHHHHHHhhcCCCCCEEEEecCccccCchhHHHH-HHHHHHhhccCCeEEEEeecCCChhHhhhccHHHHhhcccce
Q 042861 216 -ISILASWYREQGNYNNPVVVIVDDIERCCGSVLSDF-ILMFSEWVLKIPVILIMGVTTTLDAPRNILLSNVLQCLCPCM 293 (457)
Q Consensus 216 -l~~L~~Wy~~~~~~~~~lVvil~D~Esfd~~VL~Dl-I~llSs~~~~IP~vLVfGIATs~~~~~~~Lp~s~~slL~~~~ 293 (457)
++.+..+.. ..++ ||+|+|++.++..--+++ +..|-.+. +=+.++++++..+ +...+.....++++. .
T Consensus 122 ~~~~l~~~l~----~~~~-vlilDEi~~l~~~~~~~~~l~~l~~~~---~~~~iI~~t~~~~-~~~~l~~~l~sr~~~-~ 191 (384)
T 2qby_B 122 YIDKIKNGTR----NIRA-IIYLDEVDTLVKRRGGDIVLYQLLRSD---ANISVIMISNDIN-VRDYMEPRVLSSLGP-S 191 (384)
T ss_dssp HHHHHHHHHS----SSCE-EEEEETTHHHHHSTTSHHHHHHHHTSS---SCEEEEEECSSTT-TTTTSCHHHHHTCCC-E
T ss_pred HHHHHHHHhc----cCCC-EEEEECHHHhccCCCCceeHHHHhcCC---cceEEEEEECCCc-hHhhhCHHHHhcCCC-e
Confidence 334444332 1233 999999999875432333 44444444 3344455555543 334566667777755 6
Q ss_pred eeeCCcc-hHHHHHHHHHHhcCCCceeeChhhHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 042861 294 FTLGTPS-ERMDAIIEAVLVRQCSGFSISHKVAVFMRNYFVRQDGTITSFIRALKIACS 351 (457)
Q Consensus 294 F~~~s~~-~~l~~I~e~vll~~~~~f~Lg~~v~~~L~d~F~~~d~Sv~~fi~~LK~a~M 351 (457)
+.+++.. +-+..+++..+.....+..+.+.+++.+.........++...+..++.|..
T Consensus 192 i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~G~~r~a~~~l~~a~~ 250 (384)
T 2qby_B 192 VIFKPYDAEQLKFILSKYAEYGLIKGTYDDEILSYIAAISAKEHGDARKAVNLLFRAAQ 250 (384)
T ss_dssp EEECCCCHHHHHHHHHHHHHHTSCTTSCCSHHHHHHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred EEECCCCHHHHHHHHHHHHHhhcccCCcCHHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Confidence 6666544 556667776654322245688898888888776666888888888887753
No 5
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=94.96 E-value=0.74 Score=44.77 Aligned_cols=193 Identities=14% Similarity=0.149 Sum_probs=110.8
Q ss_pred ceEEEecCCCCCCchHHHHHHHHHHhhhc---CcEEEEeeCCCCCCCCChhHHHHHHHHHHHcCCC-Cccc----HHHHH
Q 042861 149 FTGLVLTKNMEFVDDLLTFEELGRHLKSQ---GCHVANLSSLDFTAKSGIGGCLRSLLRQFLVAPL-DAAD----ISILA 220 (457)
Q Consensus 149 PTAllltGnin~~dh~~~F~~L~~~L~~~---~~~Vv~L~s~dc~~~~~i~~~Lk~ll~qli~~~~-~~yD----l~~L~ 220 (457)
+..+++.| -+=+.-..+...+...+... +..++.++..++. +....+..++.++-.... ...+ ++.+.
T Consensus 45 ~~~vli~G-~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~---~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~ 120 (386)
T 2qby_A 45 PNNIFIYG-LTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQID---TPYRVLADLLESLDVKVPFTGLSIAELYRRLV 120 (386)
T ss_dssp CCCEEEEE-CTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHC---SHHHHHHHHTTTTSCCCCSSSCCHHHHHHHHH
T ss_pred CCeEEEEC-CCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCC---CHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHH
Confidence 44667777 22245556778888877654 4566666654443 333444444443311110 1111 34444
Q ss_pred HHHHhhcCCCCCEEEEecCccccC----chhHHHHHHHHHHhhccCCeEEEEeecCCChhHhhhccHHHHhhcccceeee
Q 042861 221 SWYREQGNYNNPVVVIVDDIERCC----GSVLSDFILMFSEWVLKIPVILIMGVTTTLDAPRNILLSNVLQCLCPCMFTL 296 (457)
Q Consensus 221 ~Wy~~~~~~~~~lVvil~D~Esfd----~~VL~DlI~llSs~~~~IP~vLVfGIATs~~~~~~~Lp~s~~slL~~~~F~~ 296 (457)
.+... ...|.||+|+|++.+. ..++..|+..+..+ ..-++.+ +++++..+..+ .+.....+++..+.+.+
T Consensus 121 ~~l~~---~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~-~~~~~~~-I~~~~~~~~~~-~~~~~~~~r~~~~~i~l 194 (386)
T 2qby_A 121 KAVRD---YGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEV-NKSKISF-IGITNDVKFVD-LLDPRVKSSLSEEEIIF 194 (386)
T ss_dssp HHHHT---CCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSC-CC--EEE-EEEESCGGGGG-GCTTHHHHTTTTEEEEE
T ss_pred HHHhc---cCCeEEEEEcChhhhhccCcCHHHHHHhhchhhc-CCCeEEE-EEEECCCChHh-hhCHHHhccCCCeeEEe
Confidence 44432 3459999999999885 66777777655443 3334444 44555555433 45555667776667777
Q ss_pred CCcc-hHHHHHHHHHHhcCCCceeeChhhHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 042861 297 GTPS-ERMDAIIEAVLVRQCSGFSISHKVAVFMRNYFVRQDGTITSFIRALKIACS 351 (457)
Q Consensus 297 ~s~~-~~l~~I~e~vll~~~~~f~Lg~~v~~~L~d~F~~~d~Sv~~fi~~LK~a~M 351 (457)
++-. +-+.++++..+.....+..+.+.+.+.+...-.....++...+..++.+..
T Consensus 195 ~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~ 250 (386)
T 2qby_A 195 PPYNAEELEDILTKRAQMAFKPGVLPDNVIKLCAALAAREHGDARRALDLLRVSGE 250 (386)
T ss_dssp CCCCHHHHHHHHHHHHHHHBCSSCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 7655 445566665543222245678888888877665445788877777776654
No 6
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=93.14 E-value=3.9 Score=39.36 Aligned_cols=165 Identities=13% Similarity=0.214 Sum_probs=99.1
Q ss_pred ccceEEEecCCCCCCchHHHHHHHHHHhhhcCcEEEEeeCCCCCCCCChhHHHHHHHHHHHcCCCCcccHHHHHHHHHhh
Q 042861 147 QLFTGLVLTKNMEFVDDLLTFEELGRHLKSQGCHVANLSSLDFTAKSGIGGCLRSLLRQFLVAPLDAADISILASWYREQ 226 (457)
Q Consensus 147 ~IPTAllltGnin~~dh~~~F~~L~~~L~~~~~~Vv~L~s~dc~~~~~i~~~Lk~ll~qli~~~~~~yDl~~L~~Wy~~~ 226 (457)
.+|..+++.|... +.--.+-..+...+ +..++.+++.+.. ...++..+.++....
T Consensus 46 ~~~~~~L~~G~~G-~GKT~la~~la~~l---~~~~~~i~~~~~~-----~~~i~~~~~~~~~~~---------------- 100 (324)
T 3u61_B 46 KIPHIILHSPSPG-TGKTTVAKALCHDV---NADMMFVNGSDCK-----IDFVRGPLTNFASAA---------------- 100 (324)
T ss_dssp CCCSEEEECSSTT-SSHHHHHHHHHHHT---TEEEEEEETTTCC-----HHHHHTHHHHHHHBC----------------
T ss_pred CCCeEEEeeCcCC-CCHHHHHHHHHHHh---CCCEEEEcccccC-----HHHHHHHHHHHHhhc----------------
Confidence 4566778877222 34344445555544 4677778876542 244555554443321
Q ss_pred cCCCCCEEEEecCccccC-chhHHHHHHHHHHhhccCCeEEEEeecCCChhHhhhccHHHHhhcccceeeeCCcc--hH-
Q 042861 227 GNYNNPVVVIVDDIERCC-GSVLSDFILMFSEWVLKIPVILIMGVTTTLDAPRNILLSNVLQCLCPCMFTLGTPS--ER- 302 (457)
Q Consensus 227 ~~~~~~lVvil~D~Esfd-~~VL~DlI~llSs~~~~IP~vLVfGIATs~~~~~~~Lp~s~~slL~~~~F~~~s~~--~~- 302 (457)
.....+-||+|+|++.+. ......|..++..+....+|++ ++..+. .++....+++. .+.+..+. +.
T Consensus 101 ~~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~---~~n~~~----~l~~~l~sR~~--~i~~~~~~~~e~~ 171 (324)
T 3u61_B 101 SFDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIII---TANNID----GIIKPLQSRCR--VITFGQPTDEDKI 171 (324)
T ss_dssp CCSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEE---EESSGG----GSCTTHHHHSE--EEECCCCCHHHHH
T ss_pred ccCCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEE---EeCCcc----ccCHHHHhhCc--EEEeCCCCHHHHH
Confidence 111357899999999999 8888888888887766665554 333333 46666667665 45554443 32
Q ss_pred --HHHHHH---HHHhcCCCceeeCh-hhHHHHHHHHHhccCCHHHHHHHHHHHH
Q 042861 303 --MDAIIE---AVLVRQCSGFSISH-KVAVFMRNYFVRQDGTITSFIRALKIAC 350 (457)
Q Consensus 303 --l~~I~e---~vll~~~~~f~Lg~-~v~~~L~d~F~~~d~Sv~~fi~~LK~a~ 350 (457)
+..+++ ...... .+.+.+ .++..|... .+.++...+..|+.+.
T Consensus 172 ~il~~~~~~l~~~~~~~--~~~~~~~~~~~~l~~~---~~gd~R~a~~~L~~~~ 220 (324)
T 3u61_B 172 EMMKQMIRRLTEICKHE--GIAIADMKVVAALVKK---NFPDFRKTIGELDSYS 220 (324)
T ss_dssp HHHHHHHHHHHHHHHHH--TCCBSCHHHHHHHHHH---TCSCTTHHHHHHHHHG
T ss_pred HHHHHHHHHHHHHHHHc--CCCCCcHHHHHHHHHh---CCCCHHHHHHHHHHHh
Confidence 233332 223333 456777 877776544 6788888888888776
No 7
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=92.23 E-value=9.3 Score=37.47 Aligned_cols=193 Identities=13% Similarity=0.094 Sum_probs=105.2
Q ss_pred ceEEEe--cCCCCCCchHHHHHHHHHHhhhc------CcEEEEeeCCCCCCCCChhHHHHHHHHHHHcCCCC-c---cc-
Q 042861 149 FTGLVL--TKNMEFVDDLLTFEELGRHLKSQ------GCHVANLSSLDFTAKSGIGGCLRSLLRQFLVAPLD-A---AD- 215 (457)
Q Consensus 149 PTAlll--tGnin~~dh~~~F~~L~~~L~~~------~~~Vv~L~s~dc~~~~~i~~~Lk~ll~qli~~~~~-~---yD- 215 (457)
+..+++ .|- .=..--.+...+...+... +..++.++...+. +....++.++.++-..... . .+
T Consensus 50 ~~~~li~i~G~-~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~~~l~~~~~~~~~~~~~~ 125 (412)
T 1w5s_A 50 DVNMIYGSIGR-VGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAP---NLYTILSLIVRQTGYPIQVRGAPALDI 125 (412)
T ss_dssp CEEEEEECTTC-CSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCC---SHHHHHHHHHHHHTCCCCCTTCCHHHH
T ss_pred CCEEEEeCcCc-CCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCC---CHHHHHHHHHHHhCCCCCCCCCCHHHH
Confidence 346666 771 1234455667777766542 3456666643333 4667777777776332111 1 12
Q ss_pred HHHHHHHHHhhcCCCCCEEEEecCccccCc------hhHHHHHHHHHHhh-cc--CCeEEEEeecCCChhHhhhcc---H
Q 042861 216 ISILASWYREQGNYNNPVVVIVDDIERCCG------SVLSDFILMFSEWV-LK--IPVILIMGVTTTLDAPRNILL---S 283 (457)
Q Consensus 216 l~~L~~Wy~~~~~~~~~lVvil~D~Esfd~------~VL~DlI~llSs~~-~~--IP~vLVfGIATs~~~~~~~Lp---~ 283 (457)
++.|..+.... ..|+||+|+|++.++. .+|..++.++.... +. -++.+| +++...+.. ..+. .
T Consensus 126 ~~~l~~~l~~~---~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~v~lI-~~~~~~~~~-~~l~~~~~ 200 (412)
T 1w5s_A 126 LKALVDNLYVE---NHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVNRIGFL-LVASDVRAL-SYMREKIP 200 (412)
T ss_dssp HHHHHHHHHHH---TCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSCCBEEEE-EEEEETHHH-HHHHHHCH
T ss_pred HHHHHHHHHhc---CCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCCCceEEEE-EEeccccHH-HHHhhhcc
Confidence 45555565432 3689999999999864 77887777666542 02 454444 344444433 3333 4
Q ss_pred HHHhhcccceeeeCCcc-hHHHHHHHHHHhcCCCceeeChhhHHHHHHHHHhcc---CCHHHHHHHHHHHHH
Q 042861 284 NVLQCLCPCMFTLGTPS-ERMDAIIEAVLVRQCSGFSISHKVAVFMRNYFVRQD---GTITSFIRALKIACS 351 (457)
Q Consensus 284 s~~slL~~~~F~~~s~~-~~l~~I~e~vll~~~~~f~Lg~~v~~~L~d~F~~~d---~Sv~~fi~~LK~a~M 351 (457)
...+.+... +.+.+-+ +-..++++..+.....+-.+.+.....+........ ..+-..+..++.+..
T Consensus 201 ~~~~~~~~~-i~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~G~p~~~~~l~~~a~~ 271 (412)
T 1w5s_A 201 QVESQIGFK-LHLPAYKSRELYTILEQRAELGLRDTVWEPRHLELISDVYGEDKGGDGSARRAIVALKMACE 271 (412)
T ss_dssp HHHTTCSEE-EECCCCCHHHHHHHHHHHHHHHBCTTSCCHHHHHHHHHHHCGGGTSCCCHHHHHHHHHHHHH
T ss_pred hhhhhcCCe-eeeCCCCHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHH
Confidence 455555444 6665544 334455544333211122467777777766655433 666666665555543
No 8
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=91.85 E-value=6.1 Score=34.51 Aligned_cols=166 Identities=13% Similarity=0.146 Sum_probs=95.7
Q ss_pred EEecCCCCCCchHHHHHHHHHHhhhc--CcEEEEeeCCCCCCCCChhHHHHHHHHHHHcCCCCcccHHHHHHHHHhhcCC
Q 042861 152 LVLTKNMEFVDDLLTFEELGRHLKSQ--GCHVANLSSLDFTAKSGIGGCLRSLLRQFLVAPLDAADISILASWYREQGNY 229 (457)
Q Consensus 152 llltGnin~~dh~~~F~~L~~~L~~~--~~~Vv~L~s~dc~~~~~i~~~Lk~ll~qli~~~~~~yDl~~L~~Wy~~~~~~ 229 (457)
+++.|... +.-..+...+...+... ...++.++..+.. + ...++..+..+.... ....
T Consensus 41 ~ll~G~~G-~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~~~~~---------------~~~~ 100 (226)
T 2chg_A 41 LLFSGPPG-TGKTATAIALARDLFGENWRDNFIEMNASDER---G-IDVVRHKIKEFARTA---------------PIGG 100 (226)
T ss_dssp EEEECSTT-SSHHHHHHHHHHHHHGGGGGGGEEEEETTCTT---C-HHHHHHHHHHHHTSC---------------CSTT
T ss_pred EEEECCCC-CCHHHHHHHHHHHHhccccccceEEecccccc---C-hHHHHHHHHHHhccc---------------CCCc
Confidence 66666211 34445667777776443 2345556554432 2 233344444333221 0112
Q ss_pred CCCEEEEecCccccCchhHHHHHHHHHHhhccCCeEEEEeecCCChhHhhhccHHHHhhcccceeeeCCcc-hHHHHHHH
Q 042861 230 NNPVVVIVDDIERCCGSVLSDFILMFSEWVLKIPVILIMGVTTTLDAPRNILLSNVLQCLCPCMFTLGTPS-ERMDAIIE 308 (457)
Q Consensus 230 ~~~lVvil~D~Esfd~~VL~DlI~llSs~~~~IP~vLVfGIATs~~~~~~~Lp~s~~slL~~~~F~~~s~~-~~l~~I~e 308 (457)
..+.||+|+|++.+++..+..|..++........+++ ++... ..+.....+++. .+.+.+.. +-+..++.
T Consensus 101 ~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~---~~~~~----~~~~~~l~~r~~--~i~~~~~~~~~~~~~l~ 171 (226)
T 2chg_A 101 APFKIIFLDEADALTADAQAALRRTMEMYSKSCRFIL---SCNYV----SRIIEPIQSRCA--VFRFKPVPKEAMKKRLL 171 (226)
T ss_dssp CSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEE---EESCG----GGSCHHHHTTSE--EEECCCCCHHHHHHHHH
T ss_pred cCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEE---EeCCh----hhcCHHHHHhCc--eeecCCCCHHHHHHHHH
Confidence 4689999999999999999888888877544433322 23332 345555666555 44444332 44555666
Q ss_pred HHHhcCCCceeeChhhHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 042861 309 AVLVRQCSGFSISHKVAVFMRNYFVRQDGTITSFIRALKIACS 351 (457)
Q Consensus 309 ~vll~~~~~f~Lg~~v~~~L~d~F~~~d~Sv~~fi~~LK~a~M 351 (457)
..+... +..+++..++.|.. ....++...++.++.+.+
T Consensus 172 ~~~~~~--~~~~~~~~~~~l~~---~~~g~~r~l~~~l~~~~~ 209 (226)
T 2chg_A 172 EICEKE--GVKITEDGLEALIY---ISGGDFRKAINALQGAAA 209 (226)
T ss_dssp HHHHHH--TCCBCHHHHHHHHH---HHTTCHHHHHHHHHHHHH
T ss_pred HHHHHc--CCCCCHHHHHHHHH---HcCCCHHHHHHHHHHHHh
Confidence 655443 34578888776653 457888888888887764
No 9
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=90.86 E-value=11 Score=35.59 Aligned_cols=189 Identities=12% Similarity=0.088 Sum_probs=108.9
Q ss_pred eEEEecCCCCCCchHHHHHHHHHHhhhcCcEEEEeeCCCCCCCCChhHHHHHHHHHHHcCCCC--ccc-HHHHHHHHHhh
Q 042861 150 TGLVLTKNMEFVDDLLTFEELGRHLKSQGCHVANLSSLDFTAKSGIGGCLRSLLRQFLVAPLD--AAD-ISILASWYREQ 226 (457)
Q Consensus 150 TAllltGnin~~dh~~~F~~L~~~L~~~~~~Vv~L~s~dc~~~~~i~~~Lk~ll~qli~~~~~--~yD-l~~L~~Wy~~~ 226 (457)
..+++.|. +=+.-..+...+...+...+..++.++..++.. . .....+++.... .++ ...+..+....
T Consensus 48 ~~~ll~G~-~GtGKt~la~~la~~~~~~~~~~~~~~~~~~~~----~----~~~~~l~g~~~~~~~~~~~~~~~~~~~~~ 118 (311)
T 4fcw_A 48 GSFLFLGP-TGVGKTELAKTLAATLFDTEEAMIRIDMTEYME----K----HAVSRLIGAPPGYVGYEEGGQLTEAVRRR 118 (311)
T ss_dssp EEEEEESC-SSSSHHHHHHHHHHHHHSCGGGEEEEEGGGCCS----T----THHHHHHCCCTTSTTTTTCCHHHHHHHHC
T ss_pred eEEEEECC-CCcCHHHHHHHHHHHHcCCCcceEEeecccccc----c----ccHHHhcCCCCccccccccchHHHHHHhC
Confidence 36777882 234555666778777755433344555544432 1 123444443221 122 13455555432
Q ss_pred cCCCCCEEEEecCccccCchhHHHHHHHHHHhhcc--------CCeEEEEeecCCC---------------h-------h
Q 042861 227 GNYNNPVVVIVDDIERCCGSVLSDFILMFSEWVLK--------IPVILIMGVTTTL---------------D-------A 276 (457)
Q Consensus 227 ~~~~~~lVvil~D~Esfd~~VL~DlI~llSs~~~~--------IP~vLVfGIATs~---------------~-------~ 276 (457)
+.-|++|+++|..++.+.+.|+.++....-. ++=+++++.+... + .
T Consensus 119 ----~~~vl~lDEi~~l~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~iiI~ttn~~~~~i~~~~~~~~~~~~l~~~~~~~ 194 (311)
T 4fcw_A 119 ----PYSVILFDAIEKAHPDVFNILLQMLDDGRLTDSHGRTVDFRNTVIIMTSNLGSPLILEGLQKGWPYERIRDEVFKV 194 (311)
T ss_dssp ----SSEEEEEETGGGSCHHHHHHHHHHHHHSEEECTTSCEEECTTEEEEEEESTTHHHHHTTTTSCCCSSTHHHHTHHH
T ss_pred ----CCeEEEEeChhhcCHHHHHHHHHHHhcCEEEcCCCCEEECCCcEEEEecccCHHHHHhhhcccccHHHHHHHHHHH
Confidence 3469999999999999999999999875421 2222233333321 1 1
Q ss_pred HhhhccHHHHhhcccceeeeCCcchHHHHHHHHHHhcC-------CCceeeChhhHHHHHHHHHhccCCHHHHHHHHHHH
Q 042861 277 PRNILLSNVLQCLCPCMFTLGTPSERMDAIIEAVLVRQ-------CSGFSISHKVAVFMRNYFVRQDGTITSFIRALKIA 349 (457)
Q Consensus 277 ~~~~Lp~s~~slL~~~~F~~~s~~~~l~~I~e~vll~~-------~~~f~Lg~~v~~~L~d~F~~~d~Sv~~fi~~LK~a 349 (457)
+...++....+++.....-.+...+-+..|++..+..- .....+++.+++.|.++-+....++..+.+.++-+
T Consensus 195 ~~~~~~~~l~~R~~~~~~~~p~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~gn~R~L~~~i~~~ 274 (311)
T 4fcw_A 195 LQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQMSYLRARLAEKRISLELTEAAKDFLAERGYDPVFGARPLRRVIQRE 274 (311)
T ss_dssp HHHHSCHHHHTTCSEEEECCCCCHHHHHHHHHHHTHHHHHHHHTTTCEEEECHHHHHHHHHHSCBTTTBTTTHHHHHHHH
T ss_pred HHHhCCHHHHhcCCeEEEeCCCCHHHHHHHHHHHHHHHHHHHHhCCcEEEeCHHHHHHHHHhCCCccCCchhHHHHHHHH
Confidence 25677888888885444334444566777777765542 33678999999988875443345554454444444
Q ss_pred HH
Q 042861 350 CS 351 (457)
Q Consensus 350 ~M 351 (457)
++
T Consensus 275 ~~ 276 (311)
T 4fcw_A 275 LE 276 (311)
T ss_dssp TH
T ss_pred HH
Confidence 43
No 10
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=88.49 E-value=4.3 Score=36.37 Aligned_cols=116 Identities=11% Similarity=0.168 Sum_probs=74.1
Q ss_pred CCEEEEecCccccCchh--HHHHHHHHHHhhccCCeEEEEeecCCChhHhhhccHHHHhhc-ccceeeeCCcc-hHHHHH
Q 042861 231 NPVVVIVDDIERCCGSV--LSDFILMFSEWVLKIPVILIMGVTTTLDAPRNILLSNVLQCL-CPCMFTLGTPS-ERMDAI 306 (457)
Q Consensus 231 ~~lVvil~D~Esfd~~V--L~DlI~llSs~~~~IP~vLVfGIATs~~~~~~~Lp~s~~slL-~~~~F~~~s~~-~~l~~I 306 (457)
.+-||+|+|++.++... ...|..++......-...+|+.-...++.+...+ ....+++ .+..+.+.... +-..++
T Consensus 104 ~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~~~~-~~l~~r~~~~~~i~l~~~~~~~~~~~ 182 (242)
T 3bos_A 104 QFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAGFVL-PDLVSRMHWGLTYQLQPMMDDEKLAA 182 (242)
T ss_dssp GSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTTCCC-HHHHHHHHHSEEEECCCCCGGGHHHH
T ss_pred CCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHhh-hhhhhHhhcCceEEeCCCCHHHHHHH
Confidence 35689999999998766 7778887777665433345555455554333333 3344444 23445554443 455666
Q ss_pred HHHHHhcCCCceeeChhhHHHHHHHHHhccCCHHHHHHHHHHHHHh
Q 042861 307 IEAVLVRQCSGFSISHKVAVFMRNYFVRQDGTITSFIRALKIACSQ 352 (457)
Q Consensus 307 ~e~vll~~~~~f~Lg~~v~~~L~d~F~~~d~Sv~~fi~~LK~a~M~ 352 (457)
++..+... .+.+++.++++|... ...++..+...++.+...
T Consensus 183 l~~~~~~~--~~~~~~~~~~~l~~~---~~g~~r~l~~~l~~~~~~ 223 (242)
T 3bos_A 183 LQRRAAMR--GLQLPEDVGRFLLNR---MARDLRTLFDVLDRLDKA 223 (242)
T ss_dssp HHHHHHHT--TCCCCHHHHHHHHHH---TTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHc--CCCCCHHHHHHHHHH---ccCCHHHHHHHHHHHHHH
Confidence 67666543 467889988888764 467888888888877653
No 11
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=83.14 E-value=30 Score=32.35 Aligned_cols=106 Identities=8% Similarity=0.090 Sum_probs=68.4
Q ss_pred CCEEEEecCccccCchhHHHHHHHHHHhhccCCeEEEEeecCCChhHhhhccHHHHhhcccceeeeCCcc-hHHHHHHHH
Q 042861 231 NPVVVIVDDIERCCGSVLSDFILMFSEWVLKIPVILIMGVTTTLDAPRNILLSNVLQCLCPCMFTLGTPS-ERMDAIIEA 309 (457)
Q Consensus 231 ~~lVvil~D~Esfd~~VL~DlI~llSs~~~~IP~vLVfGIATs~~~~~~~Lp~s~~slL~~~~F~~~s~~-~~l~~I~e~ 309 (457)
++.||+|+|.+.++......|..++........|++ +++.. ..++....++.. .+.+.... +-+.++++.
T Consensus 107 ~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il---~~~~~----~~l~~~l~sr~~--~i~~~~~~~~~~~~~l~~ 177 (323)
T 1sxj_B 107 KHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAF---ACNQS----NKIIEPLQSQCA--ILRYSKLSDEDVLKRLLQ 177 (323)
T ss_dssp CCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEE---EESCG----GGSCHHHHTTSE--EEECCCCCHHHHHHHHHH
T ss_pred CceEEEEECcccCCHHHHHHHHHHHhccCCCceEEE---EeCCh----hhchhHHHhhce--EEeecCCCHHHHHHHHHH
Confidence 588999999999999888888888876554443333 33433 245555566544 45554433 445555555
Q ss_pred HHhcCCCceeeChhhHHHHHHHHHhccCCHHHHHHHHHHHH
Q 042861 310 VLVRQCSGFSISHKVAVFMRNYFVRQDGTITSFIRALKIAC 350 (457)
Q Consensus 310 vll~~~~~f~Lg~~v~~~L~d~F~~~d~Sv~~fi~~LK~a~ 350 (457)
.+... .+.+++..++.|... .+.++...+..|+.+.
T Consensus 178 ~~~~~--~~~~~~~~~~~l~~~---~~G~~r~a~~~l~~~~ 213 (323)
T 1sxj_B 178 IIKLE--DVKYTNDGLEAIIFT---AEGDMRQAINNLQSTV 213 (323)
T ss_dssp HHHHH--TCCBCHHHHHHHHHH---HTTCHHHHHHHHHHHH
T ss_pred HHHHc--CCCCCHHHHHHHHHH---cCCCHHHHHHHHHHHH
Confidence 55433 456788887776554 4778888888777665
No 12
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=83.02 E-value=31 Score=32.36 Aligned_cols=107 Identities=9% Similarity=0.164 Sum_probs=71.6
Q ss_pred CCCEEEEecCccccCchhHHHHHHHHHHhhccCCeEEEEeecCCChhHhhhccHHHHhhcccceeeeCCcc-hHHHHHHH
Q 042861 230 NNPVVVIVDDIERCCGSVLSDFILMFSEWVLKIPVILIMGVTTTLDAPRNILLSNVLQCLCPCMFTLGTPS-ERMDAIIE 308 (457)
Q Consensus 230 ~~~lVvil~D~Esfd~~VL~DlI~llSs~~~~IP~vLVfGIATs~~~~~~~Lp~s~~slL~~~~F~~~s~~-~~l~~I~e 308 (457)
..+.||+++|.+.+++...+.|..++........|++ +++.++ .++....++.. .+.+.+.. +-+..+++
T Consensus 109 ~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~---~~~~~~----~l~~~l~sr~~--~~~~~~l~~~~~~~~l~ 179 (327)
T 1iqp_A 109 ASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFIL---SCNYSS----KIIEPIQSRCA--IFRFRPLRDEDIAKRLR 179 (327)
T ss_dssp CSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEE---EESCGG----GSCHHHHHTEE--EEECCCCCHHHHHHHHH
T ss_pred CCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEE---EeCCcc----ccCHHHHhhCc--EEEecCCCHHHHHHHHH
Confidence 3578999999999999999999888877655544433 333332 35555566554 34444333 44555666
Q ss_pred HHHhcCCCceeeChhhHHHHHHHHHhccCCHHHHHHHHHHHH
Q 042861 309 AVLVRQCSGFSISHKVAVFMRNYFVRQDGTITSFIRALKIAC 350 (457)
Q Consensus 309 ~vll~~~~~f~Lg~~v~~~L~d~F~~~d~Sv~~fi~~LK~a~ 350 (457)
..+... ...+++..++.|... .+.++...+..++.+.
T Consensus 180 ~~~~~~--~~~~~~~~~~~l~~~---~~g~~r~~~~~l~~~~ 216 (327)
T 1iqp_A 180 YIAENE--GLELTEEGLQAILYI---AEGDMRRAINILQAAA 216 (327)
T ss_dssp HHHHTT--TCEECHHHHHHHHHH---HTTCHHHHHHHHHHHH
T ss_pred HHHHhc--CCCCCHHHHHHHHHH---CCCCHHHHHHHHHHHH
Confidence 665544 567899988877654 4788888888887665
No 13
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=82.50 E-value=7.7 Score=36.70 Aligned_cols=177 Identities=12% Similarity=0.064 Sum_probs=104.4
Q ss_pred cceEEEecCCCCCCchHHHHHHHHHHhhhcC----cEEEEeeCCCCCCCCChhHHHHHHHHHHHcCCCCcccHHHHHHHH
Q 042861 148 LFTGLVLTKNMEFVDDLLTFEELGRHLKSQG----CHVANLSSLDFTAKSGIGGCLRSLLRQFLVAPLDAADISILASWY 223 (457)
Q Consensus 148 IPTAllltGnin~~dh~~~F~~L~~~L~~~~----~~Vv~L~s~dc~~~~~i~~~Lk~ll~qli~~~~~~yDl~~L~~Wy 223 (457)
-+..+++.|..- +.-..+-..+...+...+ ..++.+++.+.... -++. .-..+..++
T Consensus 66 ~~~~vll~G~~G-tGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l~~~-~~g~-----------------~~~~~~~~~ 126 (309)
T 3syl_A 66 PTLHMSFTGNPG-TGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDLVGQ-YIGH-----------------TAPKTKEVL 126 (309)
T ss_dssp CCCEEEEEECTT-SSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGTCCS-STTC-----------------HHHHHHHHH
T ss_pred CCceEEEECCCC-CCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHhhhh-cccc-----------------cHHHHHHHH
Confidence 445678887322 344456677777775432 35666665443210 0010 111222333
Q ss_pred HhhcCCCCCEEEEecCcccc---------CchhHHHHHHHHHHhhccCCeEEEEeecCCC--hhHhhhccHHHHhhcccc
Q 042861 224 REQGNYNNPVVVIVDDIERC---------CGSVLSDFILMFSEWVLKIPVILIMGVTTTL--DAPRNILLSNVLQCLCPC 292 (457)
Q Consensus 224 ~~~~~~~~~lVvil~D~Esf---------d~~VL~DlI~llSs~~~~IP~vLVfGIATs~--~~~~~~Lp~s~~slL~~~ 292 (457)
... .+-||+|+|++.+ +..++..|+.++......+ ++| +.+++. +.+. .+.....+++. .
T Consensus 127 ~~~----~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~--~~i-~~~~~~~~~~~~-~~~~~l~~R~~-~ 197 (309)
T 3syl_A 127 KRA----MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDL--VVI-LAGYADRMENFF-QSNPGFRSRIA-H 197 (309)
T ss_dssp HHH----TTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTC--EEE-EEECHHHHHHHH-HHSTTHHHHEE-E
T ss_pred Hhc----CCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCE--EEE-EeCChHHHHHHH-hhCHHHHHhCC-e
Confidence 222 2349999999966 8899999999988765444 333 222222 1111 23345555553 3
Q ss_pred eeeeCCcc-hHHHHHHHHHHhcCCCceeeChhhHHHHHHHHH-----hccCCHHHHHHHHHHHHHhhh
Q 042861 293 MFTLGTPS-ERMDAIIEAVLVRQCSGFSISHKVAVFMRNYFV-----RQDGTITSFIRALKIACSQHF 354 (457)
Q Consensus 293 ~F~~~s~~-~~l~~I~e~vll~~~~~f~Lg~~v~~~L~d~F~-----~~d~Sv~~fi~~LK~a~M~HF 354 (457)
.+.++... +-+..|++..+... .+.+++.++..|.++.. ....++..+...++-+++.+-
T Consensus 198 ~i~~~~~~~~~~~~il~~~l~~~--~~~~~~~~~~~l~~~~~~~~~~~~~gn~r~l~~~l~~a~~~~~ 263 (309)
T 3syl_A 198 HIEFPDYSDEELFEIAGHMLDDQ--NYQMTPEAETALRAYIGLRRNQPHFANARSIRNALDRARLRQA 263 (309)
T ss_dssp EEEECCCCHHHHHHHHHHHHHHT--TCEECHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHHHHHHHHH
T ss_pred EEEcCCcCHHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHHH
Confidence 45555544 56667777777665 57899999999988776 444668888888988887554
No 14
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=80.42 E-value=43 Score=34.32 Aligned_cols=111 Identities=14% Similarity=0.215 Sum_probs=74.1
Q ss_pred CCCEEEEecCccccCchhHHHHHHHHHHhhccCCeEEEEeecCCChhHhhhccHHHHhhcccceeeeCCcchHHHHHHHH
Q 042861 230 NNPVVVIVDDIERCCGSVLSDFILMFSEWVLKIPVILIMGVTTTLDAPRNILLSNVLQCLCPCMFTLGTPSERMDAIIEA 309 (457)
Q Consensus 230 ~~~lVvil~D~Esfd~~VL~DlI~llSs~~~~IP~vLVfGIATs~~~~~~~Lp~s~~slL~~~~F~~~s~~~~l~~I~e~ 309 (457)
..+-||+|++.+.|+......|+..+..- . +.++|.+|... ...+.....+++..-.|...+ .+-+..+++.
T Consensus 105 ~~~~iLfIDEI~~l~~~~q~~LL~~le~~----~-v~lI~att~n~--~~~l~~aL~sR~~v~~l~~l~-~edi~~il~~ 176 (447)
T 3pvs_A 105 GRRTILFVDEVHRFNKSQQDAFLPHIEDG----T-ITFIGATTENP--SFELNSALLSRARVYLLKSLS-TEDIEQVLTQ 176 (447)
T ss_dssp TCCEEEEEETTTCC------CCHHHHHTT----S-CEEEEEESSCG--GGSSCHHHHTTEEEEECCCCC-HHHHHHHHHH
T ss_pred CCCcEEEEeChhhhCHHHHHHHHHHHhcC----c-eEEEecCCCCc--ccccCHHHhCceeEEeeCCcC-HHHHHHHHHH
Confidence 35789999999999999888888777652 2 34445444322 246778888877644444443 3556777788
Q ss_pred HHhcCC-----CceeeChhhHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 042861 310 VLVRQC-----SGFSISHKVAVFMRNYFVRQDGTITSFIRALKIACS 351 (457)
Q Consensus 310 vll~~~-----~~f~Lg~~v~~~L~d~F~~~d~Sv~~fi~~LK~a~M 351 (457)
.+.... ..+.+++.++++|..+ .+.++...+..|+.+..
T Consensus 177 ~l~~~~~~~~~~~~~i~~~al~~L~~~---~~Gd~R~lln~Le~a~~ 220 (447)
T 3pvs_A 177 AMEDKTRGYGGQDIVLPDETRRAIAEL---VNGDARRALNTLEMMAD 220 (447)
T ss_dssp HHHCTTTSSTTSSEECCHHHHHHHHHH---HCSCHHHHHHHHHHHHH
T ss_pred HHHHHhhhhccccCcCCHHHHHHHHHH---CCCCHHHHHHHHHHHHH
Confidence 777632 3578999999888776 68899999999998875
No 15
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=80.19 E-value=21 Score=33.35 Aligned_cols=108 Identities=10% Similarity=0.126 Sum_probs=67.7
Q ss_pred CCCEEEEecCccccCchhHHHHHHHHHHhhccCCeEEEEeecCCChhHhhhccHHHHhhcccceeeeCCcc-hHHHHHHH
Q 042861 230 NNPVVVIVDDIERCCGSVLSDFILMFSEWVLKIPVILIMGVTTTLDAPRNILLSNVLQCLCPCMFTLGTPS-ERMDAIIE 308 (457)
Q Consensus 230 ~~~lVvil~D~Esfd~~VL~DlI~llSs~~~~IP~vLVfGIATs~~~~~~~Lp~s~~slL~~~~F~~~s~~-~~l~~I~e 308 (457)
..+-||+|+|.+.++......|..++...... . .++++++..+ .+.....++.. .+.+.+.. +-+..++.
T Consensus 101 ~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~--~-~~i~~~~~~~----~l~~~l~sr~~--~i~~~~~~~~~~~~~l~ 171 (319)
T 2chq_A 101 APFKIIFLDEADALTADAQAALRRTMEMYSKS--C-RFILSCNYVS----RIIEPIQSRCA--VFRFKPVPKEAMKKRLL 171 (319)
T ss_dssp CCCEEEEEETGGGSCHHHHHTTGGGTSSSSSS--E-EEEEEESCGG----GSCHHHHTTCE--EEECCCCCHHHHHHHHH
T ss_pred CCceEEEEeCCCcCCHHHHHHHHHHHHhcCCC--C-eEEEEeCChh----hcchHHHhhCe--EEEecCCCHHHHHHHHH
Confidence 45789999999999987766665444332222 2 2333344433 45556666654 45554433 44555666
Q ss_pred HHHhcCCCceeeChhhHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 042861 309 AVLVRQCSGFSISHKVAVFMRNYFVRQDGTITSFIRALKIACS 351 (457)
Q Consensus 309 ~vll~~~~~f~Lg~~v~~~L~d~F~~~d~Sv~~fi~~LK~a~M 351 (457)
..+... .+.+++..++.|. ...+.++...+..++-+.+
T Consensus 172 ~~~~~~--~~~i~~~~l~~l~---~~~~G~~r~~~~~l~~~~~ 209 (319)
T 2chq_A 172 EICEKE--GVKITEDGLEALI---YISGGDFRKAINALQGAAA 209 (319)
T ss_dssp HHHHTT--CCCBCHHHHHHHH---HTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHc--CCCCCHHHHHHHH---HHcCCCHHHHHHHHHHHHH
Confidence 665544 4578898887775 4557888888888877654
No 16
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=79.99 E-value=16 Score=35.33 Aligned_cols=114 Identities=15% Similarity=0.104 Sum_probs=75.0
Q ss_pred CEEEEecCccccCchhHHHHHHHHHHhhccCCeEEEEeecC-------CChhHhhhccHHHHhhcccceeeeCCcc-hHH
Q 042861 232 PVVVIVDDIERCCGSVLSDFILMFSEWVLKIPVILIMGVTT-------TLDAPRNILLSNVLQCLCPCMFTLGTPS-ERM 303 (457)
Q Consensus 232 ~lVvil~D~Esfd~~VL~DlI~llSs~~~~IP~vLVfGIAT-------s~~~~~~~Lp~s~~slL~~~~F~~~s~~-~~l 303 (457)
|-||+|+|.+.++...++.|..++.... .|+ +++|-.. +.......|+....+++.. +.+++.. +-+
T Consensus 190 ~~vl~IDEi~~l~~~~~~~L~~~le~~~--~~~-~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR~~~--i~~~~~~~~e~ 264 (368)
T 3uk6_A 190 PGVLFIDEVHMLDIESFSFLNRALESDM--APV-LIMATNRGITRIRGTSYQSPHGIPIDLLDRLLI--VSTTPYSEKDT 264 (368)
T ss_dssp BCEEEEESGGGSBHHHHHHHHHHTTCTT--CCE-EEEEESCSEEECBTSSCEEETTCCHHHHTTEEE--EEECCCCHHHH
T ss_pred CceEEEhhccccChHHHHHHHHHhhCcC--CCe-eeeecccceeeeeccCCCCcccCCHHHHhhccE--EEecCCCHHHH
Confidence 5799999999999998888877765433 344 3333321 1111235677788888765 4554433 455
Q ss_pred HHHHHHHHhcCCCceeeChhhHHHHHHHHHhccCCHHHHHHHHHHHHHhhh
Q 042861 304 DAIIEAVLVRQCSGFSISHKVAVFMRNYFVRQDGTITSFIRALKIACSQHF 354 (457)
Q Consensus 304 ~~I~e~vll~~~~~f~Lg~~v~~~L~d~F~~~d~Sv~~fi~~LK~a~M~HF 354 (457)
..+++..+... ...+++.+++.|..+... .++...+..++.|.+.-.
T Consensus 265 ~~il~~~~~~~--~~~~~~~~l~~l~~~~~~--G~~r~~~~ll~~a~~~A~ 311 (368)
T 3uk6_A 265 KQILRIRCEEE--DVEMSEDAYTVLTRIGLE--TSLRYAIQLITAASLVCR 311 (368)
T ss_dssp HHHHHHHHHHT--TCCBCHHHHHHHHHHHHH--SCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHc--CCCCCHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHHH
Confidence 56666666554 457899988888665443 788888888888876443
No 17
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=79.18 E-value=57 Score=33.79 Aligned_cols=174 Identities=13% Similarity=0.228 Sum_probs=92.1
Q ss_pred cceEEEecCCCCCCchHHHHHHHHHHhhhcCcEEEEeeCCCCCCCCChhHHHHHHHHHHHcCCCCcccHHHHHHHHHhh-
Q 042861 148 LFTGLVLTKNMEFVDDLLTFEELGRHLKSQGCHVANLSSLDFTAKSGIGGCLRSLLRQFLVAPLDAADISILASWYREQ- 226 (457)
Q Consensus 148 IPTAllltGnin~~dh~~~F~~L~~~L~~~~~~Vv~L~s~dc~~~~~i~~~Lk~ll~qli~~~~~~yDl~~L~~Wy~~~- 226 (457)
.+.++++.|-.- +.--.+-..+...+ +..++.++..++.. +..++..+....... + +..++...
T Consensus 76 ~~~~lLL~GppG-tGKTtla~~la~~l---~~~~i~in~s~~~~----~~~~~~~i~~~~~~~----~---~~~~~~~~~ 140 (516)
T 1sxj_A 76 VFRAAMLYGPPG-IGKTTAAHLVAQEL---GYDILEQNASDVRS----KTLLNAGVKNALDNM----S---VVGYFKHNE 140 (516)
T ss_dssp SCSEEEEECSTT-SSHHHHHHHHHHHT---TCEEEEECTTSCCC----HHHHHHTGGGGTTBC----C---STTTTTC--
T ss_pred CCcEEEEECCCC-CCHHHHHHHHHHHc---CCCEEEEeCCCcch----HHHHHHHHHHHhccc----c---HHHHHhhhh
Confidence 566888888222 34344445565555 57788888777642 223333332222111 1 11111111
Q ss_pred ---cCCCCCEEEEecCccccCch---hHHHHHHHHHHhhccCCeEEEEeecCCChhHhhhccHHHHhhcccceeeeCCcc
Q 042861 227 ---GNYNNPVVVIVDDIERCCGS---VLSDFILMFSEWVLKIPVILIMGVTTTLDAPRNILLSNVLQCLCPCMFTLGTPS 300 (457)
Q Consensus 227 ---~~~~~~lVvil~D~Esfd~~---VL~DlI~llSs~~~~IP~vLVfGIATs~~~~~~~Lp~s~~slL~~~~F~~~s~~ 300 (457)
.....+.||+|+|++.+... .+..|..++.. .+.|++++.. +... ..|+. ..++. ..+.+....
T Consensus 141 ~~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~~--~~~~iIli~~--~~~~---~~l~~-l~~r~--~~i~f~~~~ 210 (516)
T 1sxj_A 141 EAQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRK--TSTPLILICN--ERNL---PKMRP-FDRVC--LDIQFRRPD 210 (516)
T ss_dssp --CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHHH--CSSCEEEEES--CTTS---STTGG-GTTTS--EEEECCCCC
T ss_pred hhhhccCCCeEEEEECCCccchhhHHHHHHHHHHHHh--cCCCEEEEEc--CCCC---ccchh-hHhce--EEEEeCCCC
Confidence 12356899999999998763 33555554443 4677666543 2211 12221 11221 234443333
Q ss_pred -hHHHHHHHHHHhcCCCceeeChhhHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 042861 301 -ERMDAIIEAVLVRQCSGFSISHKVAVFMRNYFVRQDGTITSFIRALKIACS 351 (457)
Q Consensus 301 -~~l~~I~e~vll~~~~~f~Lg~~v~~~L~d~F~~~d~Sv~~fi~~LK~a~M 351 (457)
+-+..++..+.... .+.+++.++..|.. ..+.++...++.|+.+.+
T Consensus 211 ~~~~~~~L~~i~~~~--~~~i~~~~l~~la~---~s~GdiR~~i~~L~~~~~ 257 (516)
T 1sxj_A 211 ANSIKSRLMTIAIRE--KFKLDPNVIDRLIQ---TTRGDIRQVINLLSTIST 257 (516)
T ss_dssp HHHHHHHHHHHHHHH--TCCCCTTHHHHHHH---HTTTCHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHc--CCCCCHHHHHHHHH---HcCCcHHHHHHHHHHHHh
Confidence 33444555555443 35678888776654 457889999998887764
No 18
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=76.68 E-value=30 Score=33.54 Aligned_cols=61 Identities=16% Similarity=0.090 Sum_probs=40.1
Q ss_pred CCCEEEEecCccccCchhHHHHHHHHHHhhccCCeEEEEeecCCChhHhhhccHHHHhhcccceeeeCCc
Q 042861 230 NNPVVVIVDDIERCCGSVLSDFILMFSEWVLKIPVILIMGVTTTLDAPRNILLSNVLQCLCPCMFTLGTP 299 (457)
Q Consensus 230 ~~~lVvil~D~Esfd~~VL~DlI~llSs~~~~IP~vLVfGIATs~~~~~~~Lp~s~~slL~~~~F~~~s~ 299 (457)
..+-||+|++.|.++....+.|+..+.+.-.. +.++.+++.+ +.++....++... |.+...
T Consensus 107 ~~~kvviIdead~l~~~a~naLLk~lEep~~~---~~~Il~t~~~----~~l~~ti~SRc~~--~~~~~~ 167 (334)
T 1a5t_A 107 GGAKVVWVTDAALLTDAAANALLKTLEEPPAE---TWFFLATREP----ERLLATLRSRCRL--HYLAPP 167 (334)
T ss_dssp SSCEEEEESCGGGBCHHHHHHHHHHHTSCCTT---EEEEEEESCG----GGSCHHHHTTSEE--EECCCC
T ss_pred CCcEEEEECchhhcCHHHHHHHHHHhcCCCCC---eEEEEEeCCh----HhCcHHHhhccee--eeCCCC
Confidence 35789999999999999988888777553222 3333345554 3566777777654 444443
No 19
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=76.02 E-value=30 Score=34.03 Aligned_cols=113 Identities=12% Similarity=0.100 Sum_probs=65.4
Q ss_pred CCEEEEecCccccCch-----------hHHHHHHHHHHhhccCCeEEEEeecCCChhHhhhccHHHHhhcccce-eeeCC
Q 042861 231 NPVVVIVDDIERCCGS-----------VLSDFILMFSEWVLKIPVILIMGVTTTLDAPRNILLSNVLQCLCPCM-FTLGT 298 (457)
Q Consensus 231 ~~lVvil~D~Esfd~~-----------VL~DlI~llSs~~~~IP~vLVfGIATs~~~~~~~Lp~s~~slL~~~~-F~~~s 298 (457)
.|.||+|+|++.+.+. ++..|+..+......-.-++|+|.+..++ .|+...++++.... |..+
T Consensus 143 ~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vI~atn~~~----~ld~al~rRf~~~i~i~~P- 217 (355)
T 2qp9_X 143 KPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPW----QLDSAIRRRFERRIYIPLP- 217 (355)
T ss_dssp SSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---CCEEEEEEESCGG----GSCHHHHHTCCEEEECCCC-
T ss_pred CCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCCCeEEEeecCCcc----cCCHHHHcccCEEEEeCCc-
Confidence 5889999999998753 56667666654433334567777666654 55666666664333 3333
Q ss_pred cchHHHHHHHHHHhcCCCceeeChhhHHHHHHHHHhccCCHHHHHHHHHHHHHh
Q 042861 299 PSERMDAIIEAVLVRQCSGFSISHKVAVFMRNYFVRQDGTITSFIRALKIACSQ 352 (457)
Q Consensus 299 ~~~~l~~I~e~vll~~~~~f~Lg~~v~~~L~d~F~~~d~Sv~~fi~~LK~a~M~ 352 (457)
..+-...|++..+-.. +..++...+..|..... .+|...+-..++-|+|.
T Consensus 218 ~~~~r~~il~~~l~~~--~~~~~~~~l~~la~~t~--G~sg~dl~~l~~~A~~~ 267 (355)
T 2qp9_X 218 DLAARTTMFEINVGDT--PSVLTKEDYRTLGAMTE--GYSGSDIAVVVKDALMQ 267 (355)
T ss_dssp CHHHHHHHHHHHHTTS--CBCCCHHHHHHHHHHTT--TCCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhC--CCCCCHHHHHHHHHHcC--CCCHHHHHHHHHHHHHH
Confidence 3345566777766544 45567777766665432 34544444444444443
No 20
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=71.69 E-value=34 Score=31.55 Aligned_cols=117 Identities=15% Similarity=0.152 Sum_probs=75.5
Q ss_pred EEEEecCccccCchhHHHHHHHHHHhh---------ccCCeEEEEeecCCCh-hH-hhhccHHHHhhcccceeeeCCcch
Q 042861 233 VVVIVDDIERCCGSVLSDFILMFSEWV---------LKIPVILIMGVTTTLD-AP-RNILLSNVLQCLCPCMFTLGTPSE 301 (457)
Q Consensus 233 lVvil~D~Esfd~~VL~DlI~llSs~~---------~~IP~vLVfGIATs~~-~~-~~~Lp~s~~slL~~~~F~~~s~~~ 301 (457)
-+|+|+|++.++..+...|..++..-. ....+.+|+.-..+++ .+ ...+.....+++..-.+.+++-.+
T Consensus 102 ~~l~lDEi~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~~iI~atn~~~~~~~~~~~~~~~L~~Rl~~~~i~lp~L~~ 181 (265)
T 2bjv_A 102 GTLFLDELATAPMMVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDALAFDVVQLPPLRE 181 (265)
T ss_dssp SEEEEESGGGSCHHHHHHHHHHHHHCEECCCCC--CEECCCEEEEEESSCHHHHHHHTSSCHHHHHHHCSEEEECCCGGG
T ss_pred cEEEEechHhcCHHHHHHHHHHHHhCCeecCCCcccccCCeEEEEecCcCHHHHHHcCCccHHHHHhhcCcEEeCCChhh
Confidence 489999999999999988888886531 1234445544333333 22 346788888999877788888765
Q ss_pred HH---HHHHHHHHhc----CCCc--eeeChhhHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 042861 302 RM---DAIIEAVLVR----QCSG--FSISHKVAVFMRNYFVRQDGTITSFIRALKIACS 351 (457)
Q Consensus 302 ~l---~~I~e~vll~----~~~~--f~Lg~~v~~~L~d~F~~~d~Sv~~fi~~LK~a~M 351 (457)
.. ..+++.++.. ...+ ..+++.+++.|..+ ....++..+.+.++.+++
T Consensus 182 R~~di~~l~~~~l~~~~~~~~~~~~~~~~~~a~~~L~~~--~~~gn~reL~~~l~~~~~ 238 (265)
T 2bjv_A 182 RESDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNY--RWPGNIRELKNVVERSVY 238 (265)
T ss_dssp CHHHHHHHHHHHHHHHHHHTTCSSCCCBCHHHHHHHHHS--CCTTHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHhCCCcccCcCHHHHHHHHhC--CCCCCHHHHHHHHHHHHH
Confidence 43 3333333322 2222 36899988777542 224678888888887765
No 21
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=70.36 E-value=96 Score=33.65 Aligned_cols=174 Identities=12% Similarity=0.138 Sum_probs=98.1
Q ss_pred EEEecCCCCCCchHHHHHHHHHHhhhcCcEEEEeeCCCCCCCCChhHHHHHHHHHHHcCCCCcccHHHHHHHHHhhcCCC
Q 042861 151 GLVLTKNMEFVDDLLTFEELGRHLKSQGCHVANLSSLDFTAKSGIGGCLRSLLRQFLVAPLDAADISILASWYREQGNYN 230 (457)
Q Consensus 151 AllltGnin~~dh~~~F~~L~~~L~~~~~~Vv~L~s~dc~~~~~i~~~Lk~ll~qli~~~~~~yDl~~L~~Wy~~~~~~~ 230 (457)
.+++.|..- +.--.+-..+...+...+..++.++-.++..+..+. -..+...... .
T Consensus 523 ~~Ll~Gp~G-tGKT~lA~ala~~l~~~~~~~i~i~~s~~~~~~~~~-------------------~~~l~~~~~~----~ 578 (758)
T 3pxi_A 523 SFIFLGPTG-VGKTELARALAESIFGDEESMIRIDMSEYMEKHSTS-------------------GGQLTEKVRR----K 578 (758)
T ss_dssp EEEEESCTT-SSHHHHHHHHHHHHHSCTTCEEEEEGGGGCSSCCCC----------------------CHHHHHH----C
T ss_pred EEEEECCCC-CCHHHHHHHHHHHhcCCCcceEEEechhcccccccc-------------------cchhhHHHHh----C
Confidence 467777222 343445566776664444455666655554322221 0011112211 1
Q ss_pred CCEEEEecCccccCchhHHHHHHHHHHhhc------cC---CeEEEEeecCCC-------hhHhhhccHHHHhhccccee
Q 042861 231 NPVVVIVDDIERCCGSVLSDFILMFSEWVL------KI---PVILIMGVTTTL-------DAPRNILLSNVLQCLCPCMF 294 (457)
Q Consensus 231 ~~lVvil~D~Esfd~~VL~DlI~llSs~~~------~I---P~vLVfGIATs~-------~~~~~~Lp~s~~slL~~~~F 294 (457)
+.-||+|+++|.+++.+++-|..++....- ++ .+++|+.-.... +.+.+.++....+++.. .+
T Consensus 579 ~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn~~~~~~~~~~~~~~~~f~p~l~~Rl~~-~i 657 (758)
T 3pxi_A 579 PYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNVGASEKDKVMGELKRAFRPEFINRIDE-II 657 (758)
T ss_dssp SSSEEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEESSSTTCCHHHHHHHHHHSCHHHHTTSSE-EE
T ss_pred CCeEEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCCCChhhHHHHHHHHHhhCCHHHHhhCCe-EE
Confidence 344999999999999999999999987431 11 223333222111 34566789999999953 44
Q ss_pred eeCCcc-hHHHHHHHHHHhc-------CCCceeeChhhHHHHHHHHHhccCCHHHHHHHHHHH
Q 042861 295 TLGTPS-ERMDAIIEAVLVR-------QCSGFSISHKVAVFMRNYFVRQDGTITSFIRALKIA 349 (457)
Q Consensus 295 ~~~s~~-~~l~~I~e~vll~-------~~~~f~Lg~~v~~~L~d~F~~~d~Sv~~fi~~LK~a 349 (457)
.+++.. +-+..|++..+.. ....+.+++.++++|.+.-....+++..+-+.|+-+
T Consensus 658 ~~~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~R~L~~~i~~~ 720 (758)
T 3pxi_A 658 VFHSLEKKHLTEIVSLMSDQLTKRLKEQDLSIELTDAAKAKVAEEGVDLEYGARPLRRAIQKH 720 (758)
T ss_dssp ECC--CHHHHHHHHHHHHHHHHHHHHTTTCEEEECHHHHHHHHGGGCCTTTTTTTHHHHHHHH
T ss_pred ecCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEECHHHHHHHHHhCCCCCCCChHHHHHHHHH
Confidence 444433 4455555554433 145688999999999776555556655555555543
No 22
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=69.94 E-value=36 Score=32.68 Aligned_cols=114 Identities=11% Similarity=0.108 Sum_probs=70.1
Q ss_pred CCEEEEecCccccCc-----------hhHHHHHHHHHHhhccCCeEEEEeecCCChhHhhhccHHHHhhcccce-eeeCC
Q 042861 231 NPVVVIVDDIERCCG-----------SVLSDFILMFSEWVLKIPVILIMGVTTTLDAPRNILLSNVLQCLCPCM-FTLGT 298 (457)
Q Consensus 231 ~~lVvil~D~Esfd~-----------~VL~DlI~llSs~~~~IP~vLVfGIATs~~~~~~~Lp~s~~slL~~~~-F~~~s 298 (457)
.|-||+|+|++.+.+ .+...|+..+......-.-++|+|.+..++ .|+....+++.... |..+
T Consensus 110 ~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~atn~~~----~ld~al~~Rf~~~i~~~~p- 184 (322)
T 3eie_A 110 KPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPW----QLDSAIRRRFERRIYIPLP- 184 (322)
T ss_dssp SSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCCCEEEEEEESCGG----GSCHHHHHHCCEEEECCCC-
T ss_pred CCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCCceEEEEecCChh----hCCHHHHcccCeEEEeCCC-
Confidence 578999999999876 456777777765544445567777665554 35666666665433 3333
Q ss_pred cchHHHHHHHHHHhcCCCceeeChhhHHHHHHHHHhccCCHHHHHHHHHHHHHhh
Q 042861 299 PSERMDAIIEAVLVRQCSGFSISHKVAVFMRNYFVRQDGTITSFIRALKIACSQH 353 (457)
Q Consensus 299 ~~~~l~~I~e~vll~~~~~f~Lg~~v~~~L~d~F~~~d~Sv~~fi~~LK~a~M~H 353 (457)
..+-..+|++..+-.. +..+....+..|.... ..+|...+-..++.|.|.-
T Consensus 185 ~~~~r~~il~~~~~~~--~~~~~~~~l~~la~~t--~g~sg~di~~l~~~a~~~a 235 (322)
T 3eie_A 185 DLAARTTMFEINVGDT--PCVLTKEDYRTLGAMT--EGYSGSDIAVVVKDALMQP 235 (322)
T ss_dssp CHHHHHHHHHHHHTTC--CCCCCHHHHHHHHHTT--TTCCHHHHHHHHHHHTTHH
T ss_pred CHHHHHHHHHHHhccC--CCCCCHHHHHHHHHHc--CCCCHHHHHHHHHHHHHHH
Confidence 3344556777665543 5667777776665433 3456655555566555443
No 23
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=67.95 E-value=21 Score=34.16 Aligned_cols=118 Identities=8% Similarity=0.034 Sum_probs=77.3
Q ss_pred CEEEEecCccccCchhHHHHHHHHHHhhc---------c--CCeEEEEeecCCChhHhhhccHHHHhhcccceeeeCCc-
Q 042861 232 PVVVIVDDIERCCGSVLSDFILMFSEWVL---------K--IPVILIMGVTTTLDAPRNILLSNVLQCLCPCMFTLGTP- 299 (457)
Q Consensus 232 ~lVvil~D~Esfd~~VL~DlI~llSs~~~---------~--IP~vLVfGIATs~~~~~~~Lp~s~~slL~~~~F~~~s~- 299 (457)
+-|++|+|++.+++.+++.|..++..-.. . .++++| | +|++. ...++....+++.. .+.+...
T Consensus 145 ~~vl~iDEi~~l~~~~~~~Ll~~le~~~~~~~~~g~~~~~~~~~~li-~-~~n~~--~~~l~~~L~~R~~~-~~~l~~~~ 219 (350)
T 1g8p_A 145 RGYLYIDECNLLEDHIVDLLLDVAQSGENVVERDGLSIRHPARFVLV-G-SGNPE--EGDLRPQLLDRFGL-SVEVLSPR 219 (350)
T ss_dssp TEEEEETTGGGSCHHHHHHHHHHHHHSEEEECCTTCCEEEECCEEEE-E-EECSC--SCCCCHHHHTTCSE-EEECCCCC
T ss_pred CCEEEEeChhhCCHHHHHHHHHHHhcCceEEEecceEEeeCCceEEE-E-EeCCC--CCCCCHHHHhhcce-EEEcCCCC
Confidence 46999999999999999999988876321 1 133333 3 33331 24688888888854 4555555
Q ss_pred -chHHHHHHHHHHh---------------------------cCCCceeeChhhHHHHHHHHHhccC-CHHHHHHHHHHHH
Q 042861 300 -SERMDAIIEAVLV---------------------------RQCSGFSISHKVAVFMRNYFVRQDG-TITSFIRALKIAC 350 (457)
Q Consensus 300 -~~~l~~I~e~vll---------------------------~~~~~f~Lg~~v~~~L~d~F~~~d~-Sv~~fi~~LK~a~ 350 (457)
.+....|++..+. .....+.+++.++++|.++....+. ++...+..++.|.
T Consensus 220 ~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ls~~~~~~l~~~~~~~~~~~~R~~~~ll~~a~ 299 (350)
T 1g8p_A 220 DVETRVEVIRRRDTYDADPKAFLEEWRPKDMDIRNQILEARERLPKVEAPNTALYDCAALCIALGSDGLRGELTLLRSAR 299 (350)
T ss_dssp SHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHGGGCBCCHHHHHHHHHHHHHSSSCSHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcccCchhhccccccchHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHH
Confidence 3333344433210 1112458999999999999887776 8888888888776
Q ss_pred Hhhh
Q 042861 351 SQHF 354 (457)
Q Consensus 351 M~HF 354 (457)
..-+
T Consensus 300 ~~A~ 303 (350)
T 1g8p_A 300 ALAA 303 (350)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5443
No 24
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=66.44 E-value=33 Score=31.94 Aligned_cols=187 Identities=11% Similarity=0.129 Sum_probs=101.6
Q ss_pred ccceEEEecCCCCCCchHHHHHHHHHHhhhcCcEEEEeeCCCCCCCCChhHHHHHHHHHHHcCCCCcccHHHHHHHHHhh
Q 042861 147 QLFTGLVLTKNMEFVDDLLTFEELGRHLKSQGCHVANLSSLDFTAKSGIGGCLRSLLRQFLVAPLDAADISILASWYREQ 226 (457)
Q Consensus 147 ~IPTAllltGnin~~dh~~~F~~L~~~L~~~~~~Vv~L~s~dc~~~~~i~~~Lk~ll~qli~~~~~~yDl~~L~~Wy~~~ 226 (457)
..|.++++.|... +.-..+-+.+...+ ++.++.++..++....-++......++.+...... .+...
T Consensus 48 ~~~~~vll~G~~G-tGKT~la~~la~~l---~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~---- 114 (310)
T 1ofh_A 48 VTPKNILMIGPTG-VGKTEIARRLAKLA---NAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAGG-----AIDAV---- 114 (310)
T ss_dssp CCCCCEEEECCTT-SSHHHHHHHHHHHH---TCCEEEEEGGGGSSCCSGGGSTTHHHHHHHHTTTT-----CHHHH----
T ss_pred CCCceEEEECCCC-CCHHHHHHHHHHHh---CCCEEEEcchhcccCCccCccHHHHHHHHHHHhhH-----HHhhc----
Confidence 3566888888322 34344556666655 34566666655542111111112223333322110 01100
Q ss_pred cCCCCCEEEEecCccccCchh------------HHHHHHHHHHhh--------ccCCeEEEEeecCCChhHhhhccHHHH
Q 042861 227 GNYNNPVVVIVDDIERCCGSV------------LSDFILMFSEWV--------LKIPVILIMGVTTTLDAPRNILLSNVL 286 (457)
Q Consensus 227 ~~~~~~lVvil~D~Esfd~~V------------L~DlI~llSs~~--------~~IP~vLVfGIATs~~~~~~~Lp~s~~ 286 (457)
..+-||+|+|+|.+.+.. .+.|+.++.... ..-.+++|+. +.....-...++....
T Consensus 115 ---~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~i~~-~~~~~~~~~~l~~~l~ 190 (310)
T 1ofh_A 115 ---EQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIAS-GAFQVARPSDLIPELQ 190 (310)
T ss_dssp ---HHHCEEEEECGGGGSCCSSCCSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEE-ECCSSSCGGGSCHHHH
T ss_pred ---cCCCEEEEEChhhcCccccccccchhHHHHHHHHHHHhcCCeEecccccccCCcEEEEEc-CCcccCCcccCCHHHH
Confidence 124599999999999876 666777776432 1113444433 2110111236777888
Q ss_pred hhcccceeeeCCcc-hHHHHHHH-----------HHHhcCCCceeeChhhHHHHHHHHHhc-----cCCHHHHHHHHHHH
Q 042861 287 QCLCPCMFTLGTPS-ERMDAIIE-----------AVLVRQCSGFSISHKVAVFMRNYFVRQ-----DGTITSFIRALKIA 349 (457)
Q Consensus 287 slL~~~~F~~~s~~-~~l~~I~e-----------~vll~~~~~f~Lg~~v~~~L~d~F~~~-----d~Sv~~fi~~LK~a 349 (457)
+++. ..+.+++.. +-+.+|++ ..+......+.+++.++++|..+.... ..++..+.+.++.+
T Consensus 191 ~R~~-~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~g~~R~l~~~l~~~ 269 (310)
T 1ofh_A 191 GRLP-IRVELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIAEAAFRVNEKTENIGARRLHTVMERL 269 (310)
T ss_dssp HTCC-EEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHHTTCEEEECHHHHHHHHHHHHHHHHHSCCCTTHHHHHHHHHH
T ss_pred hhCC-ceEEcCCcCHHHHHHHHHhhHHHHHHHHHHHHHhcCCeeccCHHHHHHHHHHhhhhcccccccCcHHHHHHHHHH
Confidence 8887 345555444 34444554 222234456789999999999887653 57888888887776
Q ss_pred HH
Q 042861 350 CS 351 (457)
Q Consensus 350 ~M 351 (457)
+.
T Consensus 270 ~~ 271 (310)
T 1ofh_A 270 MD 271 (310)
T ss_dssp SH
T ss_pred HH
Confidence 53
No 25
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=65.77 E-value=67 Score=27.84 Aligned_cols=107 Identities=14% Similarity=0.167 Sum_probs=67.8
Q ss_pred CCCEEEEecCccccCchhHHHHHHHHHHhhccCCeEEEEeecCCChhHhhhccHHHHhhcccceeeeCCcc-hHHHHHHH
Q 042861 230 NNPVVVIVDDIERCCGSVLSDFILMFSEWVLKIPVILIMGVTTTLDAPRNILLSNVLQCLCPCMFTLGTPS-ERMDAIIE 308 (457)
Q Consensus 230 ~~~lVvil~D~Esfd~~VL~DlI~llSs~~~~IP~vLVfGIATs~~~~~~~Lp~s~~slL~~~~F~~~s~~-~~l~~I~e 308 (457)
..+.||+|+|++.++...+..|+.++..... ...+| .+++..+ .++....++. ..+.+++.. +-+.++++
T Consensus 125 ~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~--~~~~i-~~t~~~~----~~~~~l~~r~--~~i~l~~l~~~e~~~~l~ 195 (250)
T 1njg_A 125 GRFKVYLIDEVHMLSRHSFNALLKTLEEPPE--HVKFL-LATTDPQ----KLPVTILSRC--LQFHLKALDVEQIRHQLE 195 (250)
T ss_dssp SSSEEEEEETGGGSCHHHHHHHHHHHHSCCT--TEEEE-EEESCGG----GSCHHHHTTS--EEEECCCCCHHHHHHHHH
T ss_pred CCceEEEEECcccccHHHHHHHHHHHhcCCC--ceEEE-EEeCChH----hCCHHHHHHh--hhccCCCCCHHHHHHHHH
Confidence 4689999999999999999998887764322 23333 3343333 3444444442 345555433 45566667
Q ss_pred HHHhcCCCceeeChhhHHHHHHHHHhccCCHHHHHHHHHHHH
Q 042861 309 AVLVRQCSGFSISHKVAVFMRNYFVRQDGTITSFIRALKIAC 350 (457)
Q Consensus 309 ~vll~~~~~f~Lg~~v~~~L~d~F~~~d~Sv~~fi~~LK~a~ 350 (457)
..+... ...+.+..++.|.. ..+.++......++.++
T Consensus 196 ~~~~~~--~~~~~~~~~~~l~~---~~~G~~~~~~~~~~~~~ 232 (250)
T 1njg_A 196 HILNEE--HIAHEPRALQLLAR---AAEGSLRDALSLTDQAI 232 (250)
T ss_dssp HHHHHT--TCCBCHHHHHHHHH---HHTTCHHHHHHHHHHHH
T ss_pred HHHHhc--CCCCCHHHHHHHHH---HcCCCHHHHHHHHHHHH
Confidence 666554 35677877766554 34678888888777764
No 26
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=64.86 E-value=98 Score=29.46 Aligned_cols=108 Identities=10% Similarity=0.217 Sum_probs=73.4
Q ss_pred CCEEEEecCccccCchhHHHHHHHHHHhhccCCeEEEEeecCCChhHhhhccHHHHhhcccceeeeCCcc-hHHHHHHHH
Q 042861 231 NPVVVIVDDIERCCGSVLSDFILMFSEWVLKIPVILIMGVTTTLDAPRNILLSNVLQCLCPCMFTLGTPS-ERMDAIIEA 309 (457)
Q Consensus 231 ~~lVvil~D~Esfd~~VL~DlI~llSs~~~~IP~vLVfGIATs~~~~~~~Lp~s~~slL~~~~F~~~s~~-~~l~~I~e~ 309 (457)
.+-||++++.+++++...+.|..++..+.....|++ +++.++ .++....++. ..|++...+ +-+..+++.
T Consensus 134 ~~~vlilDE~~~L~~~~~~~L~~~le~~~~~~~~Il---~t~~~~----~l~~~l~sR~--~~~~~~~~~~~~~~~~l~~ 204 (354)
T 1sxj_E 134 RYKCVIINEANSLTKDAQAALRRTMEKYSKNIRLIM---VCDSMS----PIIAPIKSQC--LLIRCPAPSDSEISTILSD 204 (354)
T ss_dssp CCEEEEEECTTSSCHHHHHHHHHHHHHSTTTEEEEE---EESCSC----SSCHHHHTTS--EEEECCCCCHHHHHHHHHH
T ss_pred CCeEEEEeCccccCHHHHHHHHHHHHhhcCCCEEEE---EeCCHH----HHHHHHHhhc--eEEecCCcCHHHHHHHHHH
Confidence 577999999999999999999999988766533333 344443 2455566655 345554443 445555565
Q ss_pred HHhcCCCceeeC-hhhHHHHHHHHHhccCCHHHHHHHHHHHHHh
Q 042861 310 VLVRQCSGFSIS-HKVAVFMRNYFVRQDGTITSFIRALKIACSQ 352 (457)
Q Consensus 310 vll~~~~~f~Lg-~~v~~~L~d~F~~~d~Sv~~fi~~LK~a~M~ 352 (457)
+.... .+.+. +.++..|.. ..+.++...+..|+-+.+.
T Consensus 205 ~~~~~--~~~~~~~~~l~~i~~---~~~G~~r~a~~~l~~~~~~ 243 (354)
T 1sxj_E 205 VVTNE--RIQLETKDILKRIAQ---ASNGNLRVSLLMLESMALN 243 (354)
T ss_dssp HHHHH--TCEECCSHHHHHHHH---HHTTCHHHHHHHHTHHHHT
T ss_pred HHHHc--CCCCCcHHHHHHHHH---HcCCCHHHHHHHHHHHHHh
Confidence 55443 45678 888877754 4588999999999977764
No 27
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=64.00 E-value=1e+02 Score=29.39 Aligned_cols=107 Identities=13% Similarity=0.160 Sum_probs=66.3
Q ss_pred CCCEEEEecCccccCchhHHHHHHHHHHhhccCCeEEEEeecCCChhHhhhccHHHHhhcccceeeeCCcc-hHHHHHHH
Q 042861 230 NNPVVVIVDDIERCCGSVLSDFILMFSEWVLKIPVILIMGVTTTLDAPRNILLSNVLQCLCPCMFTLGTPS-ERMDAIIE 308 (457)
Q Consensus 230 ~~~lVvil~D~Esfd~~VL~DlI~llSs~~~~IP~vLVfGIATs~~~~~~~Lp~s~~slL~~~~F~~~s~~-~~l~~I~e 308 (457)
..+.||+|+|.+.++...++.|+.++...-. -+.++++++... .++....++. ..+.+.... +-+..+++
T Consensus 118 ~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~---~~~~Il~~~~~~----~l~~~l~sr~--~~i~~~~l~~~~~~~~l~ 188 (373)
T 1jr3_A 118 GRFKVYLIDEVHMLSRHSFNALLKTLEEPPE---HVKFLLATTDPQ----KLPVTILSRC--LQFHLKALDVEQIRHQLE 188 (373)
T ss_dssp SSSEEEEEECGGGSCHHHHHHHHHHHHSCCS---SEEEEEEESCGG----GSCHHHHTTS--EEEECCCCCHHHHHHHHH
T ss_pred CCeEEEEEECcchhcHHHHHHHHHHHhcCCC---ceEEEEEeCChH----hCcHHHHhhe--eEeeCCCCCHHHHHHHHH
Confidence 4578999999999999988888877754322 233333444443 3455555554 345554433 44556666
Q ss_pred HHHhcCCCceeeChhhHHHHHHHHHhccCCHHHHHHHHHHHH
Q 042861 309 AVLVRQCSGFSISHKVAVFMRNYFVRQDGTITSFIRALKIAC 350 (457)
Q Consensus 309 ~vll~~~~~f~Lg~~v~~~L~d~F~~~d~Sv~~fi~~LK~a~ 350 (457)
..+... +..+++..++.|.. ..+.++......++-+.
T Consensus 189 ~~~~~~--~~~~~~~a~~~l~~---~~~G~~r~~~~~l~~~~ 225 (373)
T 1jr3_A 189 HILNEE--HIAHEPRALQLLAR---AAEGSLRDALSLTDQAI 225 (373)
T ss_dssp HHHHHH--TCCBCHHHHHHHHH---HSSSCHHHHHHHHHHHH
T ss_pred HHHHHc--CCCCCHHHHHHHHH---HCCCCHHHHHHHHHHHH
Confidence 655443 35677887766644 44778777777776554
No 28
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=62.71 E-value=1.1e+02 Score=29.09 Aligned_cols=173 Identities=12% Similarity=0.165 Sum_probs=101.2
Q ss_pred eEEEecCCCCCCchHHHHHHHHHHhhhcCcEEEEeeCCCCCCCCChhHHHHHHHHHHHcCCCCcccHHHHHHHHHhhcCC
Q 042861 150 TGLVLTKNMEFVDDLLTFEELGRHLKSQGCHVANLSSLDFTAKSGIGGCLRSLLRQFLVAPLDAADISILASWYREQGNY 229 (457)
Q Consensus 150 TAllltGnin~~dh~~~F~~L~~~L~~~~~~Vv~L~s~dc~~~~~i~~~Lk~ll~qli~~~~~~yDl~~L~~Wy~~~~~~ 229 (457)
..+++.|.. =+.-..+...+...+...+..++.++..+ ....++..+... .+..+...|.
T Consensus 38 ~~lll~G~~-GtGKT~la~~i~~~~~~~~~~~~~i~~~~---------~~~~~~~~~~~~-----~~~~~~~~~~----- 97 (324)
T 1l8q_A 38 NPIFIYGSV-GTGKTHLLQAAGNEAKKRGYRVIYSSADD---------FAQAMVEHLKKG-----TINEFRNMYK----- 97 (324)
T ss_dssp SSEEEECSS-SSSHHHHHHHHHHHHHHTTCCEEEEEHHH---------HHHHHHHHHHHT-----CHHHHHHHHH-----
T ss_pred CeEEEECCC-CCcHHHHHHHHHHHHHHCCCEEEEEEHHH---------HHHHHHHHHHcC-----cHHHHHHHhc-----
Confidence 356676622 24445566777777765455555555432 223333333221 2333333332
Q ss_pred CCCEEEEecCccccCc--hhHHHHHHHHHHhhccCCeEEEEeecCCChhHhhhccHHHHhhcc-cceeeeCCcchHHHHH
Q 042861 230 NNPVVVIVDDIERCCG--SVLSDFILMFSEWVLKIPVILIMGVTTTLDAPRNILLSNVLQCLC-PCMFTLGTPSERMDAI 306 (457)
Q Consensus 230 ~~~lVvil~D~Esfd~--~VL~DlI~llSs~~~~IP~vLVfGIATs~~~~~~~Lp~s~~slL~-~~~F~~~s~~~~l~~I 306 (457)
.+-|++|+|++.++. ...++|..++..+...=. .+|++-..++..+. .+.....+++. +..+.+++..+-...+
T Consensus 98 -~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~-~iii~~~~~~~~l~-~l~~~L~sR~~~~~~i~l~~~~~e~~~i 174 (324)
T 1l8q_A 98 -SVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEK-QIILASDRHPQKLD-GVSDRLVSRFEGGILVEIELDNKTRFKI 174 (324)
T ss_dssp -TCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTC-EEEEEESSCGGGCT-TSCHHHHHHHHTSEEEECCCCHHHHHHH
T ss_pred -CCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCC-eEEEEecCChHHHH-HhhhHhhhcccCceEEEeCCCHHHHHHH
Confidence 256999999999987 678888888876654322 34444344443332 45666666664 3557777633555566
Q ss_pred HHHHHhcCCCceeeChhhHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 042861 307 IEAVLVRQCSGFSISHKVAVFMRNYFVRQDGTITSFIRALKIACS 351 (457)
Q Consensus 307 ~e~vll~~~~~f~Lg~~v~~~L~d~F~~~d~Sv~~fi~~LK~a~M 351 (457)
++..+... ++.+++.++.+|..+. .++..+...|..++.
T Consensus 175 l~~~~~~~--~~~l~~~~l~~l~~~~----g~~r~l~~~l~~~~~ 213 (324)
T 1l8q_A 175 IKEKLKEF--NLELRKEVIDYLLENT----KNVREIEGKIKLIKL 213 (324)
T ss_dssp HHHHHHHT--TCCCCHHHHHHHHHHC----SSHHHHHHHHHHHHH
T ss_pred HHHHHHhc--CCCCCHHHHHHHHHhC----CCHHHHHHHHHHHHH
Confidence 77766543 5678899888887665 677777777765543
No 29
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=61.34 E-value=82 Score=29.94 Aligned_cols=110 Identities=17% Similarity=0.254 Sum_probs=74.1
Q ss_pred CCEEEEecCccccCchhHHHHHHHHHHhhc---------------cCCeEEEEeecCCChhHhhhccHHHHhhcccceee
Q 042861 231 NPVVVIVDDIERCCGSVLSDFILMFSEWVL---------------KIPVILIMGVTTTLDAPRNILLSNVLQCLCPCMFT 295 (457)
Q Consensus 231 ~~lVvil~D~Esfd~~VL~DlI~llSs~~~---------------~IP~vLVfGIATs~~~~~~~Lp~s~~slL~~~~F~ 295 (457)
.+-||+|++++.+++.+...|...+....- .+|=+.++|.++.. ..++....+++ ...+.
T Consensus 106 ~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~atn~~----~~l~~~L~~R~-~~~i~ 180 (338)
T 3pfi_A 106 EGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIGATTRA----GMLSNPLRDRF-GMQFR 180 (338)
T ss_dssp TTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCCCEEEEEESCG----GGSCHHHHTTC-SEEEE
T ss_pred CCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCCeEEEEeCCCc----cccCHHHHhhc-CEEee
Confidence 467999999999999999999988876541 23323445544443 34666677765 23455
Q ss_pred eCCcc-hHHHHHHHHHHhcCCCceeeChhhHHHHHHHHHhccCCHHHHHHHHHHHH
Q 042861 296 LGTPS-ERMDAIIEAVLVRQCSGFSISHKVAVFMRNYFVRQDGTITSFIRALKIAC 350 (457)
Q Consensus 296 ~~s~~-~~l~~I~e~vll~~~~~f~Lg~~v~~~L~d~F~~~d~Sv~~fi~~LK~a~ 350 (457)
++... +-+..+++...... ...+++.++..|.. ....++......++.+.
T Consensus 181 l~~~~~~e~~~il~~~~~~~--~~~~~~~~~~~l~~---~~~G~~r~l~~~l~~~~ 231 (338)
T 3pfi_A 181 LEFYKDSELALILQKAALKL--NKTCEEKAALEIAK---RSRSTPRIALRLLKRVR 231 (338)
T ss_dssp CCCCCHHHHHHHHHHHHHHT--TCEECHHHHHHHHH---TTTTCHHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHHHhc--CCCCCHHHHHHHHH---HHCcCHHHHHHHHHHHH
Confidence 55553 44556666666554 46788988877766 55778888888877764
No 30
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=59.62 E-value=1.5e+02 Score=29.91 Aligned_cols=178 Identities=13% Similarity=0.183 Sum_probs=100.3
Q ss_pred ceEEEecCCCCCCchHHHHHHHHHHhhhc--CcEEEEeeCCCCCCCCChhHHHHHHHHHHHcCCCCcccHHHHHHHHHhh
Q 042861 149 FTGLVLTKNMEFVDDLLTFEELGRHLKSQ--GCHVANLSSLDFTAKSGIGGCLRSLLRQFLVAPLDAADISILASWYREQ 226 (457)
Q Consensus 149 PTAllltGnin~~dh~~~F~~L~~~L~~~--~~~Vv~L~s~dc~~~~~i~~~Lk~ll~qli~~~~~~yDl~~L~~Wy~~~ 226 (457)
+..+++.|..- ++--.+...+...+... +..++.+++.+ ....++..+-.. .+..+..-|.
T Consensus 130 ~~~lll~Gp~G-~GKTtLa~aia~~l~~~~~~~~v~~v~~~~---------~~~~~~~~~~~~-----~~~~~~~~~~-- 192 (440)
T 2z4s_A 130 YNPLFIYGGVG-LGKTHLLQSIGNYVVQNEPDLRVMYITSEK---------FLNDLVDSMKEG-----KLNEFREKYR-- 192 (440)
T ss_dssp SCCEEEECSSS-SSHHHHHHHHHHHHHHHCCSSCEEEEEHHH---------HHHHHHHHHHTT-----CHHHHHHHHT--
T ss_pred CCeEEEECCCC-CCHHHHHHHHHHHHHHhCCCCeEEEeeHHH---------HHHHHHHHHHcc-----cHHHHHHHhc--
Confidence 45666666222 34445667777766543 34555555432 122233322221 1222332231
Q ss_pred cCCCCCEEEEecCccccCc--hhHHHHHHHHHHhhccCCeEEEEeecCCChhHhhhccHHHHhhcc-cceeeeCCcc-hH
Q 042861 227 GNYNNPVVVIVDDIERCCG--SVLSDFILMFSEWVLKIPVILIMGVTTTLDAPRNILLSNVLQCLC-PCMFTLGTPS-ER 302 (457)
Q Consensus 227 ~~~~~~lVvil~D~Esfd~--~VL~DlI~llSs~~~~IP~vLVfGIATs~~~~~~~Lp~s~~slL~-~~~F~~~s~~-~~ 302 (457)
..+-|++|+|.+.+.. ...+.|..++......= ..+|++-..++..+. .+.....+++. +..+.+..+. +-
T Consensus 193 ---~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~-~~iIitt~~~~~~l~-~l~~~L~sR~~~g~~i~l~~p~~e~ 267 (440)
T 2z4s_A 193 ---KKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSG-KQIVICSDREPQKLS-EFQDRLVSRFQMGLVAKLEPPDEET 267 (440)
T ss_dssp ---TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTT-CEEEEEESSCGGGCS-SCCHHHHHHHHSSBCCBCCCCCHHH
T ss_pred ---CCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCC-CeEEEEECCCHHHHH-HHHHHHHhhccCCeEEEeCCCCHHH
Confidence 1466999999999987 67788888887655432 234444333333333 25556666553 4455555544 34
Q ss_pred HHHHHHHHHhcCCCceeeChhhHHHHHHHHHhccCCHHHHHHHHHHHHHhh
Q 042861 303 MDAIIEAVLVRQCSGFSISHKVAVFMRNYFVRQDGTITSFIRALKIACSQH 353 (457)
Q Consensus 303 l~~I~e~vll~~~~~f~Lg~~v~~~L~d~F~~~d~Sv~~fi~~LK~a~M~H 353 (457)
..++++..+... ++.+.+.++.+|.. ..+.++..+...|..+...-
T Consensus 268 r~~iL~~~~~~~--~~~i~~e~l~~la~---~~~gn~R~l~~~L~~~~~~a 313 (440)
T 2z4s_A 268 RKSIARKMLEIE--HGELPEEVLNFVAE---NVDDNLRRLRGAIIKLLVYK 313 (440)
T ss_dssp HHHHHHHHHHHH--TCCCCTTHHHHHHH---HCCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHc--CCCCCHHHHHHHHH---hcCCCHHHHHHHHHHHHHHH
Confidence 455666655443 46788998888864 44688888888888766543
No 31
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=59.05 E-value=83 Score=29.80 Aligned_cols=176 Identities=11% Similarity=0.102 Sum_probs=100.9
Q ss_pred EEecCCCCCCchHHHHHHHHHHhhh---cCcEEEEeeCCCCCCCCChhHHHHHHHHHHHcCCCCcccHHHHHHHHHhhcC
Q 042861 152 LVLTKNMEFVDDLLTFEELGRHLKS---QGCHVANLSSLDFTAKSGIGGCLRSLLRQFLVAPLDAADISILASWYREQGN 228 (457)
Q Consensus 152 llltGnin~~dh~~~F~~L~~~L~~---~~~~Vv~L~s~dc~~~~~i~~~Lk~ll~qli~~~~~~yDl~~L~~Wy~~~~~ 228 (457)
+++.| -+=+.-..+...+...+.. ....++.+++.+-. ++ ..++..+..+......... . ++.....
T Consensus 61 ~ll~G-~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~-~----~~~~~~~ 130 (353)
T 1sxj_D 61 MLFYG-PPGTGKTSTILALTKELYGPDLMKSRILELNASDER---GI-SIVREKVKNFARLTVSKPS-K----HDLENYP 130 (353)
T ss_dssp EEEEC-STTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCC---CH-HHHTTHHHHHHHSCCCCCC-T----THHHHSC
T ss_pred EEEEC-CCCCCHHHHHHHHHHHhCCCcccccceEEEcccccc---ch-HHHHHHHHHHhhhcccccc-h----hhcccCC
Confidence 67777 2224545566777777742 13456667665532 22 3444445444433211100 0 0111112
Q ss_pred CCCCEEEEecCccccCchhHHHHHHHHHHhhccCCeEEEEeecCCChhHhhhccHHHHhhcccceeeeCCcc-hHHHHHH
Q 042861 229 YNNPVVVIVDDIERCCGSVLSDFILMFSEWVLKIPVILIMGVTTTLDAPRNILLSNVLQCLCPCMFTLGTPS-ERMDAII 307 (457)
Q Consensus 229 ~~~~lVvil~D~Esfd~~VL~DlI~llSs~~~~IP~vLVfGIATs~~~~~~~Lp~s~~slL~~~~F~~~s~~-~~l~~I~ 307 (457)
...+-||++++++.+++...+.|..++........|++ +++.++ .+.....++.. .+.+.+.. +-+..++
T Consensus 131 ~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il---~~~~~~----~l~~~l~sR~~--~i~~~~~~~~~~~~~l 201 (353)
T 1sxj_D 131 CPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCL---ICNYVT----RIIDPLASQCS--KFRFKALDASNAIDRL 201 (353)
T ss_dssp CCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEE---EESCGG----GSCHHHHHHSE--EEECCCCCHHHHHHHH
T ss_pred CCCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEE---EeCchh----hCcchhhccCc--eEEeCCCCHHHHHHHH
Confidence 23567999999999999999999988887765544444 233332 34455555544 44444333 4455555
Q ss_pred HHHHhcCCCceeeChhhHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 042861 308 EAVLVRQCSGFSISHKVAVFMRNYFVRQDGTITSFIRALKIACS 351 (457)
Q Consensus 308 e~vll~~~~~f~Lg~~v~~~L~d~F~~~d~Sv~~fi~~LK~a~M 351 (457)
+..+... .+.+++.+++.|.+. .+.++...+..++.+..
T Consensus 202 ~~~~~~~--~~~i~~~~l~~l~~~---~~G~~r~~~~~l~~~~~ 240 (353)
T 1sxj_D 202 RFISEQE--NVKCDDGVLERILDI---SAGDLRRGITLLQSASK 240 (353)
T ss_dssp HHHHHTT--TCCCCHHHHHHHHHH---TSSCHHHHHHHHHHTHH
T ss_pred HHHHHHh--CCCCCHHHHHHHHHH---cCCCHHHHHHHHHHHHH
Confidence 6655543 456889988777654 45778888887776554
No 32
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=58.86 E-value=52 Score=35.67 Aligned_cols=120 Identities=13% Similarity=0.227 Sum_probs=81.0
Q ss_pred CCEEEEecCccccCchhHHHHHHHHHHhhcc--------CC-eEEEEeecCCC--------------------hhHhhhc
Q 042861 231 NPVVVIVDDIERCCGSVLSDFILMFSEWVLK--------IP-VILIMGVTTTL--------------------DAPRNIL 281 (457)
Q Consensus 231 ~~lVvil~D~Esfd~~VL~DlI~llSs~~~~--------IP-~vLVfGIATs~--------------------~~~~~~L 281 (457)
+.-||+|+++|..++.+++-|..++..-.-+ .. +++|+.-.... +.+.+.+
T Consensus 557 ~~~vl~lDEi~~~~~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~iI~tsN~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 636 (758)
T 1r6b_X 557 PHAVLLLDEIEKAHPDVFNILLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIF 636 (758)
T ss_dssp SSEEEEEETGGGSCHHHHHHHHHHHHHSEEEETTTEEEECTTEEEEEEECSSCC-----------------CHHHHHHHS
T ss_pred CCcEEEEeCccccCHHHHHHHHHHhcCcEEEcCCCCEEecCCeEEEEecCcchhhhhhcccCccccchHHHHHHHHHHhc
Confidence 5689999999999999999999999864311 11 22333221111 2345688
Q ss_pred cHHHHhhcccceeeeCCcc-hHHHHHHHHHHh-------cCCCceeeChhhHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 042861 282 LSNVLQCLCPCMFTLGTPS-ERMDAIIEAVLV-------RQCSGFSISHKVAVFMRNYFVRQDGTITSFIRALKIACS 351 (457)
Q Consensus 282 p~s~~slL~~~~F~~~s~~-~~l~~I~e~vll-------~~~~~f~Lg~~v~~~L~d~F~~~d~Sv~~fi~~LK~a~M 351 (457)
+...++++... +.+++.. +-+..|++..+. .....+.+++.++++|.++-+..++++..+.+.|+-+++
T Consensus 637 ~~~l~~R~~~~-i~~~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~g~R~l~~~i~~~~~ 713 (758)
T 1r6b_X 637 TPEFRNRLDNI-IWFDHLSTDVIHQVVDKFIVELQVQLDQKGVSLEVSQEARNWLAEKGYDRAMGARPMARVIQDNLK 713 (758)
T ss_dssp CHHHHTTCSEE-EECCCCCHHHHHHHHHHHHHHHHHHHHHTTEEEEECHHHHHHHHHHHCBTTTBTTTHHHHHHHHHT
T ss_pred CHHHHhhCCcc-eeeCCCCHHHHHHHHHHHHHHHHHHHHHCCcEEEeCHHHHHHHHHhCCCcCCCchHHHHHHHHHHH
Confidence 88899988543 4444433 556666666554 223357899999999999888778777777777776654
No 33
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=57.31 E-value=1.4e+02 Score=28.94 Aligned_cols=176 Identities=13% Similarity=0.152 Sum_probs=92.2
Q ss_pred ccceEEEecCCCCCCchHHHHHHHHHHhhhcCcEEEEeeCCCCCCCCChhHHHHHHHHHHHcCCCCcccHHHHHHHHHhh
Q 042861 147 QLFTGLVLTKNMEFVDDLLTFEELGRHLKSQGCHVANLSSLDFTAKSGIGGCLRSLLRQFLVAPLDAADISILASWYREQ 226 (457)
Q Consensus 147 ~IPTAllltGnin~~dh~~~F~~L~~~L~~~~~~Vv~L~s~dc~~~~~i~~~Lk~ll~qli~~~~~~yDl~~L~~Wy~~~ 226 (457)
..|.++++.|..- +.--.+-..+...+ +..++.++..+... ...+.....++.+.. ...
T Consensus 115 ~~~~~vLl~GppG-tGKT~la~aia~~~---~~~~~~i~~~~l~~--~~~g~~~~~~~~~~~-------------~a~-- 173 (357)
T 3d8b_A 115 GPPKGILLFGPPG-TGKTLIGKCIASQS---GATFFSISASSLTS--KWVGEGEKMVRALFA-------------VAR-- 173 (357)
T ss_dssp SCCSEEEEESSTT-SSHHHHHHHHHHHT---TCEEEEEEGGGGCC--SSTTHHHHHHHHHHH-------------HHH--
T ss_pred CCCceEEEECCCC-CCHHHHHHHHHHHc---CCeEEEEehHHhhc--cccchHHHHHHHHHH-------------HHH--
Confidence 4577899988322 34344445555443 45666666655432 111222222222221 111
Q ss_pred cCCCCCEEEEecCccccCc-----------hhHHHHHHHHHHhhccCC-eEEEEeecCCChhHhhhccHHHHhhcccce-
Q 042861 227 GNYNNPVVVIVDDIERCCG-----------SVLSDFILMFSEWVLKIP-VILIMGVTTTLDAPRNILLSNVLQCLCPCM- 293 (457)
Q Consensus 227 ~~~~~~lVvil~D~Esfd~-----------~VL~DlI~llSs~~~~IP-~vLVfGIATs~~~~~~~Lp~s~~slL~~~~- 293 (457)
...|-||+|+|++.+.+ .+++.|+..+.......+ -++|+|.+..++ .|.....+++....
T Consensus 174 --~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~~v~vI~atn~~~----~l~~~l~~Rf~~~i~ 247 (357)
T 3d8b_A 174 --CQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQ----EIDEAARRRLVKRLY 247 (357)
T ss_dssp --HTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----CCCCEEEEEEESCGG----GBCHHHHTTCCEEEE
T ss_pred --hcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccCCCCEEEEEecCChh----hCCHHHHhhCceEEE
Confidence 13578999999988743 456667666654432222 245555554443 46666777665332
Q ss_pred eeeCCcchHHHHHHHHHHhcCCCceeeChhhHHHHHHHHHhccCCHHHHHHHHHHHHHhhh
Q 042861 294 FTLGTPSERMDAIIEAVLVRQCSGFSISHKVAVFMRNYFVRQDGTITSFIRALKIACSQHF 354 (457)
Q Consensus 294 F~~~s~~~~l~~I~e~vll~~~~~f~Lg~~v~~~L~d~F~~~d~Sv~~fi~~LK~a~M~HF 354 (457)
+..++ .+-...+++.++... +..+....+..|.... ..+|-..+....++|.+.-.
T Consensus 248 i~~p~-~~~r~~il~~~~~~~--~~~l~~~~l~~la~~t--~G~s~~dl~~l~~~a~~~~i 303 (357)
T 3d8b_A 248 IPLPE-ASARKQIVINLMSKE--QCCLSEEEIEQIVQQS--DAFSGADMTQLCREASLGPI 303 (357)
T ss_dssp CCCCC-HHHHHHHHHHHHHTS--CBCCCHHHHHHHHHHT--TTCCHHHHHHHHHHHHTHHH
T ss_pred eCCcC-HHHHHHHHHHHHhhc--CCCccHHHHHHHHHHc--CCCCHHHHHHHHHHHHHHHH
Confidence 33333 344456666666544 4456777666665543 34566666666677766543
No 34
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=54.20 E-value=1.7e+02 Score=28.72 Aligned_cols=115 Identities=17% Similarity=0.225 Sum_probs=65.7
Q ss_pred CCEEEEecCcccc-----------CchhHHHHHHHHHHhhccCCe-EEEEeecCCChhHhhhccHHHHhhcccc-eeeeC
Q 042861 231 NPVVVIVDDIERC-----------CGSVLSDFILMFSEWVLKIPV-ILIMGVTTTLDAPRNILLSNVLQCLCPC-MFTLG 297 (457)
Q Consensus 231 ~~lVvil~D~Esf-----------d~~VL~DlI~llSs~~~~IP~-vLVfGIATs~~~~~~~Lp~s~~slL~~~-~F~~~ 297 (457)
.|-||+|+|++.+ ...++..|+..+.......+. ++|+|.+..++ .|+....+++... .|..+
T Consensus 207 ~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~~~----~l~~~l~~R~~~~i~i~~p 282 (389)
T 3vfd_A 207 QPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGDDRVLVMGATNRPQ----ELDEAVLRRFIKRVYVSLP 282 (389)
T ss_dssp SSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC-----CEEEEEEESCGG----GCCHHHHTTCCEEEECCCC
T ss_pred CCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccCCCCEEEEEecCCch----hcCHHHHcCcceEEEcCCc
Confidence 4679999999988 456677777777655543332 45555554433 5667777766532 24443
Q ss_pred CcchHHHHHHHHHHhcCCCceeeChhhHHHHHHHHHhccCCHHHHHHHHHHHHHhhh
Q 042861 298 TPSERMDAIIEAVLVRQCSGFSISHKVAVFMRNYFVRQDGTITSFIRALKIACSQHF 354 (457)
Q Consensus 298 s~~~~l~~I~e~vll~~~~~f~Lg~~v~~~L~d~F~~~d~Sv~~fi~~LK~a~M~HF 354 (457)
+ .+-...+++.++... ...+....+..|.... ..++-..+..-+++|.+.-.
T Consensus 283 ~-~~~r~~il~~~~~~~--~~~l~~~~~~~la~~~--~g~~~~~l~~L~~~a~~~~~ 334 (389)
T 3vfd_A 283 N-EETRLLLLKNLLCKQ--GSPLTQKELAQLARMT--DGYSGSDLTALAKDAALGPI 334 (389)
T ss_dssp C-HHHHHHHHHHHHTTS--CCCSCHHHHHHHHHHT--TTCCHHHHHHHHHHHTTHHH
T ss_pred C-HHHHHHHHHHHHHhc--CCCCCHHHHHHHHHHc--CCCCHHHHHHHHHHHHHHHH
Confidence 3 344556666666554 4456777666555433 23455555555666665544
No 35
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=54.05 E-value=46 Score=31.74 Aligned_cols=115 Identities=13% Similarity=0.146 Sum_probs=70.9
Q ss_pred EEEEecCccccCchhHHHHHHHHHHhhc---------cCCeEEEEeecCCChhHhh--hccHHHHhhccc-ceeeeCCcc
Q 042861 233 VVVIVDDIERCCGSVLSDFILMFSEWVL---------KIPVILIMGVTTTLDAPRN--ILLSNVLQCLCP-CMFTLGTPS 300 (457)
Q Consensus 233 lVvil~D~Esfd~~VL~DlI~llSs~~~---------~IP~vLVfGIATs~~~~~~--~Lp~s~~slL~~-~~F~~~s~~ 300 (457)
-|++++|++.+++.+++.|..++.+..- .-++++| .++++..... .|+....+++.. -.+..++ .
T Consensus 111 ~vl~iDEi~~~~~~~~~~Ll~~l~~~~~~~~g~~~~~~~~~~vi--at~np~~~~~~~~l~~~l~~Rf~~~i~i~~p~-~ 187 (331)
T 2r44_A 111 NFILADEVNRSPAKVQSALLECMQEKQVTIGDTTYPLDNPFLVL--ATQNPVEQEGTYPLPEAQVDRFMMKIHLTYLD-K 187 (331)
T ss_dssp SEEEEETGGGSCHHHHHHHHHHHHHSEEEETTEEEECCSSCEEE--EEECTTCCSCCCCCCHHHHTTSSEEEECCCCC-H
T ss_pred cEEEEEccccCCHHHHHHHHHHHhcCceeeCCEEEECCCCEEEE--EecCCCcccCcccCCHHHHhheeEEEEcCCCC-H
Confidence 4999999999999999999998887532 2234444 2333322222 388888888743 2233332 2
Q ss_pred hHHHHHHHHHHhcCC--------------------CceeeChhhHHHHHHHHHh---c--------------cCCHHHHH
Q 042861 301 ERMDAIIEAVLVRQC--------------------SGFSISHKVAVFMRNYFVR---Q--------------DGTITSFI 343 (457)
Q Consensus 301 ~~l~~I~e~vll~~~--------------------~~f~Lg~~v~~~L~d~F~~---~--------------d~Sv~~fi 343 (457)
+-..+|++....... ....++..++.++.+.... + ..|....+
T Consensus 188 ~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~~~i~~~~~~~r~~~~~~~~~~~~~~~~~~s~R~~~ 267 (331)
T 2r44_A 188 ESELEVMRRVSNMNFNYQVQKIVSKNDVLEIRNEINKVTISESLEKYIIELVFATRFPAEYGLEAEASYILYGASTRAAI 267 (331)
T ss_dssp HHHHHHHHHHHCTTCCCCCCCCSCHHHHHHHHHHHHTCBCCHHHHHHHHHHHHHHHSGGGGTCHHHHHHEEECCCHHHHH
T ss_pred HHHHHHHHhccccCcchhccccCCHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhccccccccccccccccCcChhHHH
Confidence 445556655543321 1456788888888776531 1 23777777
Q ss_pred HHHHHHH
Q 042861 344 RALKIAC 350 (457)
Q Consensus 344 ~~LK~a~ 350 (457)
+.++.|-
T Consensus 268 ~ll~~a~ 274 (331)
T 2r44_A 268 NLNRVAK 274 (331)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7777664
No 36
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=53.81 E-value=1.6e+02 Score=28.30 Aligned_cols=172 Identities=16% Similarity=0.186 Sum_probs=87.6
Q ss_pred cceEEEecCCCCCCchHHHHHHHHHHhhhcCcEEEEeeCCCCCCCCChhHHHHHHHHHHHcCCCCcccHHHHHHHHHhhc
Q 042861 148 LFTGLVLTKNMEFVDDLLTFEELGRHLKSQGCHVANLSSLDFTAKSGIGGCLRSLLRQFLVAPLDAADISILASWYREQG 227 (457)
Q Consensus 148 IPTAllltGnin~~dh~~~F~~L~~~L~~~~~~Vv~L~s~dc~~~~~i~~~Lk~ll~qli~~~~~~yDl~~L~~Wy~~~~ 227 (457)
-|.++++.|-.- +.--.+-..+...+. +..++.++..+...+ ..+.....++.+.. ...
T Consensus 44 ~~~~iLL~GppG-tGKT~la~ala~~~~--~~~~~~i~~~~l~~~--~~g~~~~~~~~lf~-------------~a~--- 102 (322)
T 1xwi_A 44 PWRGILLFGPPG-TGKSYLAKAVATEAN--NSTFFSISSSDLVSK--WLGESEKLVKNLFQ-------------LAR--- 102 (322)
T ss_dssp CCSEEEEESSSS-SCHHHHHHHHHHHTT--SCEEEEEECCSSCCS--SCCSCHHHHHHHHH-------------HHH---
T ss_pred CCceEEEECCCC-ccHHHHHHHHHHHcC--CCcEEEEEhHHHHhh--hhhHHHHHHHHHHH-------------HHH---
Confidence 457899988322 343445566665552 345555665544311 00111122222211 111
Q ss_pred CCCCCEEEEecCccccCc-----------hhHHHHHHHHHHhhccCCeEEEEeecCCChhHhhhccHHHHhhcccceeee
Q 042861 228 NYNNPVVVIVDDIERCCG-----------SVLSDFILMFSEWVLKIPVILIMGVTTTLDAPRNILLSNVLQCLCPCMFTL 296 (457)
Q Consensus 228 ~~~~~lVvil~D~Esfd~-----------~VL~DlI~llSs~~~~IP~vLVfGIATs~~~~~~~Lp~s~~slL~~~~F~~ 296 (457)
...|-||+|+|++++.+ .+++.|+..+......-.-++|+|.+..++ .|.....+++... +.+
T Consensus 103 -~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~v~vI~atn~~~----~ld~al~rRf~~~-i~i 176 (322)
T 1xwi_A 103 -ENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPW----VLDSAIRRRFEKR-IYI 176 (322)
T ss_dssp -HTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTTEEEEEEESCTT----TSCHHHHHTCCEE-EEC
T ss_pred -hcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCCCEEEEEecCCcc----cCCHHHHhhcCeE-EEe
Confidence 13578999999999833 355666655544332334467777665554 4566666666433 333
Q ss_pred CCc-chHHHHHHHHHHhcCCCceeeChhhHHHHHHHHHhccCCHHHHHHHHHHHH
Q 042861 297 GTP-SERMDAIIEAVLVRQCSGFSISHKVAVFMRNYFVRQDGTITSFIRALKIAC 350 (457)
Q Consensus 297 ~s~-~~~l~~I~e~vll~~~~~f~Lg~~v~~~L~d~F~~~d~Sv~~fi~~LK~a~ 350 (457)
+.+ .+-...|++..+-.. +..+....+..|.... ..+|-..+-...+-|.
T Consensus 177 ~~P~~~~r~~il~~~l~~~--~~~l~~~~l~~la~~t--~G~sgadl~~l~~~A~ 227 (322)
T 1xwi_A 177 PLPEPHARAAMFKLHLGTT--QNSLTEADFRELGRKT--DGYSGADISIIVRDAL 227 (322)
T ss_dssp CCCCHHHHHHHHHHHHTTC--CBCCCHHHHHHHHHTC--TTCCHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHhcC--CCCCCHHHHHHHHHHc--CCCCHHHHHHHHHHHH
Confidence 333 345566777766443 4556776666655432 2345443333334333
No 37
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=51.58 E-value=65 Score=32.73 Aligned_cols=113 Identities=14% Similarity=0.163 Sum_probs=62.4
Q ss_pred CCEEEEecCccccCc-----------hhHHHHHHHHHHhhccCCeEEEEeecCCChhHhhhccHHHHhhcccceeeeCCc
Q 042861 231 NPVVVIVDDIERCCG-----------SVLSDFILMFSEWVLKIPVILIMGVTTTLDAPRNILLSNVLQCLCPCMFTLGTP 299 (457)
Q Consensus 231 ~~lVvil~D~Esfd~-----------~VL~DlI~llSs~~~~IP~vLVfGIATs~~~~~~~Lp~s~~slL~~~~F~~~s~ 299 (457)
.|-||+|+|++++.+ .+++.|+..+......-.=++|+|.+..++ .|+...++++....+--.+.
T Consensus 227 ~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~v~vI~atn~~~----~ld~al~rRf~~~i~i~~P~ 302 (444)
T 2zan_A 227 KPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPW----VLDSAIRRRFEKRIYIPLPE 302 (444)
T ss_dssp CSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCSSCEEEEEESCGG----GSCHHHHTTCCEEEECCCCC
T ss_pred CCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCCCEEEEecCCCcc----ccCHHHHhhcceEEEeCCcC
Confidence 578999999998833 244444433322211123356777665553 46667777665333222223
Q ss_pred chHHHHHHHHHHhcCCCceeeChhhHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 042861 300 SERMDAIIEAVLVRQCSGFSISHKVAVFMRNYFVRQDGTITSFIRALKIACS 351 (457)
Q Consensus 300 ~~~l~~I~e~vll~~~~~f~Lg~~v~~~L~d~F~~~d~Sv~~fi~~LK~a~M 351 (457)
.+....|++..+-.. +..+....+..|.... ..+|-..+-..++-|.|
T Consensus 303 ~~~r~~il~~~l~~~--~~~l~~~~l~~la~~t--~G~sgadl~~l~~~a~~ 350 (444)
T 2zan_A 303 AHARAAMFRLHLGST--QNSLTEADFQELGRKT--DGYSGADISIIVRDALM 350 (444)
T ss_dssp HHHHHHHHHHHHTTS--CEECCHHHHHHHHHHT--TTCCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcC--CCCCCHHHHHHHHHHc--CCCCHHHHHHHHHHHHH
Confidence 345556777766443 5667777776666543 24565444444555554
No 38
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=48.22 E-value=1.9e+02 Score=27.58 Aligned_cols=112 Identities=7% Similarity=0.066 Sum_probs=66.4
Q ss_pred CCEEEEecCccc-cCchhHHHHHHHHHHhhccCCeEEEEeecCCChhH--hhhccHHHHhhcccceeeeCCcchHHHHHH
Q 042861 231 NPVVVIVDDIER-CCGSVLSDFILMFSEWVLKIPVILIMGVTTTLDAP--RNILLSNVLQCLCPCMFTLGTPSERMDAII 307 (457)
Q Consensus 231 ~~lVvil~D~Es-fd~~VL~DlI~llSs~~~~IP~vLVfGIATs~~~~--~~~Lp~s~~slL~~~~F~~~s~~~~l~~I~ 307 (457)
.+=||++++.+. ++....+.|+..+.+.-+. .+|||. +|.++.. .+.++....++-..-.|.-.+. .-+.+.+
T Consensus 76 ~~kvvii~~~~~kl~~~~~~aLl~~le~p~~~--~~~il~-~~~~~~~~~~~k~~~~i~sr~~~~~~~~l~~-~~l~~~l 151 (343)
T 1jr3_D 76 SRQTLLLLLPENGPNAAINEQLLTLTGLLHDD--LLLIVR-GNKLSKAQENAAWFTALANRSVQVTCQTPEQ-AQLPRWV 151 (343)
T ss_dssp SCEEEEEECCSSCCCTTHHHHHHHHHTTCBTT--EEEEEE-ESCCCTTTTTSHHHHHHTTTCEEEEECCCCT-THHHHHH
T ss_pred CCeEEEEECCCCCCChHHHHHHHHHHhcCCCC--eEEEEE-cCCCChhhHhhHHHHHHHhCceEEEeeCCCH-HHHHHHH
Confidence 355788899998 9888888887666554333 334443 3443321 1234444444433333433333 4455555
Q ss_pred HHHHhcCCCceeeChhhHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 042861 308 EAVLVRQCSGFSISHKVAVFMRNYFVRQDGTITSFIRALKIACS 351 (457)
Q Consensus 308 e~vll~~~~~f~Lg~~v~~~L~d~F~~~d~Sv~~fi~~LK~a~M 351 (457)
+..+... .+.+.+..+++|. ...+.++....+.|+-..+
T Consensus 152 ~~~~~~~--g~~i~~~a~~~l~---~~~~gdl~~~~~elekl~l 190 (343)
T 1jr3_D 152 AARAKQL--NLELDDAANQVLC---YCYEGNLLALAQALERLSL 190 (343)
T ss_dssp HHHHHHT--TCEECHHHHHHHH---HSSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHc--CCCCCHHHHHHHH---HHhchHHHHHHHHHHHHHH
Confidence 6666554 6789999887775 4457788888887775443
No 39
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=44.18 E-value=1e+02 Score=29.85 Aligned_cols=78 Identities=8% Similarity=0.023 Sum_probs=52.5
Q ss_pred ccHHHHhhcccceeeeCCcchHHHHHHHH----H-------HhcCCCceeeChhhHHHHHHHHHhccCCHHHHHHHHHHH
Q 042861 281 LLSNVLQCLCPCMFTLGTPSERMDAIIEA----V-------LVRQCSGFSISHKVAVFMRNYFVRQDGTITSFIRALKIA 349 (457)
Q Consensus 281 Lp~s~~slL~~~~F~~~s~~~~l~~I~e~----v-------ll~~~~~f~Lg~~v~~~L~d~F~~~d~Sv~~fi~~LK~a 349 (457)
+....+.++..-..-.+...+.+.+|++. + +......+.+++.++++|.++-...+..+..+-+.++-+
T Consensus 239 ~~~~l~~R~~~~~~~~pl~~~~~~~I~~~~~~~l~~~~~~~~~~~~~~l~~~~~a~~~L~~~~~~~~~gaR~L~~~ie~~ 318 (363)
T 3hws_A 239 LIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKKAMARKTGARGLRSIVEAA 318 (363)
T ss_dssp CCHHHHTTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTTCTTTTHHHHHHHH
T ss_pred CCHHHhcccCeeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCceEEECHHHHHHHHHhhcCCccCchHHHHHHHHH
Confidence 67777788876554445555666666654 2 233345688999999999987666777777777777777
Q ss_pred HHhhhccCc
Q 042861 350 CSQHFSMEP 358 (457)
Q Consensus 350 ~M~HFy~nP 358 (457)
++.-.+.-|
T Consensus 319 ~~~~l~~~~ 327 (363)
T 3hws_A 319 LLDTMYDLP 327 (363)
T ss_dssp HHHHHHSTT
T ss_pred HHHHHHhcc
Confidence 766555443
No 40
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=43.67 E-value=1e+02 Score=28.91 Aligned_cols=110 Identities=15% Similarity=0.225 Sum_probs=67.5
Q ss_pred CCEEEEecCccccCchhHHHHHHHHHHhhcc---------------CCeEEEEeecCCChhHhhhccHHHHhhcccceee
Q 042861 231 NPVVVIVDDIERCCGSVLSDFILMFSEWVLK---------------IPVILIMGVTTTLDAPRNILLSNVLQCLCPCMFT 295 (457)
Q Consensus 231 ~~lVvil~D~Esfd~~VL~DlI~llSs~~~~---------------IP~vLVfGIATs~~~~~~~Lp~s~~slL~~~~F~ 295 (457)
.+-+|+|+|++.++......|..++....-. .|=+.++|.++... .+.....+++. ..+.
T Consensus 90 ~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~t~~~~----~~~~~l~~R~~-~~i~ 164 (324)
T 1hqc_A 90 EGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATTRPG----LITAPLLSRFG-IVEH 164 (324)
T ss_dssp TTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEEEEESCCS----SCSCSTTTTCS-CEEE
T ss_pred CCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCEEEEEeCCCcc----cCCHHHHhccc-EEEe
Confidence 4669999999999999998898888776421 12234445444443 23333344442 2344
Q ss_pred eCCcc-hHHHHHHHHHHhcCCCceeeChhhHHHHHHHHHhccCCHHHHHHHHHHHH
Q 042861 296 LGTPS-ERMDAIIEAVLVRQCSGFSISHKVAVFMRNYFVRQDGTITSFIRALKIAC 350 (457)
Q Consensus 296 ~~s~~-~~l~~I~e~vll~~~~~f~Lg~~v~~~L~d~F~~~d~Sv~~fi~~LK~a~ 350 (457)
+.... +-+..+++...... ...+++.++..|..+ ...++..+...++.+.
T Consensus 165 l~~~~~~e~~~~l~~~~~~~--~~~~~~~~~~~l~~~---~~G~~r~l~~~l~~~~ 215 (324)
T 1hqc_A 165 LEYYTPEELAQGVMRDARLL--GVRITEEAALEIGRR---SRGTMRVAKRLFRRVR 215 (324)
T ss_dssp CCCCCHHHHHHHHHHHHHTT--TCCCCHHHHHHHHHH---SCSCHHHHHHHHHHHT
T ss_pred cCCCCHHHHHHHHHHHHHhc--CCCCCHHHHHHHHHH---ccCCHHHHHHHHHHHH
Confidence 43333 34456666665543 456888888777655 4677777777776654
No 41
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=39.79 E-value=2.5e+02 Score=26.65 Aligned_cols=168 Identities=15% Similarity=0.194 Sum_probs=96.8
Q ss_pred ccceEEEecCCCCCCchHHHHHHHHHHhhhcC--cEEEEeeCCCCCCCCChhHHHHHHHHHHHcCCCCcccHHHHHHHHH
Q 042861 147 QLFTGLVLTKNMEFVDDLLTFEELGRHLKSQG--CHVANLSSLDFTAKSGIGGCLRSLLRQFLVAPLDAADISILASWYR 224 (457)
Q Consensus 147 ~IPTAllltGnin~~dh~~~F~~L~~~L~~~~--~~Vv~L~s~dc~~~~~i~~~Lk~ll~qli~~~~~~yDl~~L~~Wy~ 224 (457)
++|- +++.| -+=+.-..+...+...+.... ..+..++..+.. ++ ..++..++.+.+...
T Consensus 45 ~~~~-~ll~G-p~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~---~~-~~ir~~i~~~~~~~~------------- 105 (340)
T 1sxj_C 45 KLPH-LLFYG-PPGTGKTSTIVALAREIYGKNYSNMVLELNASDDR---GI-DVVRNQIKDFASTRQ------------- 105 (340)
T ss_dssp CCCC-EEEEC-SSSSSHHHHHHHHHHHHHTTSHHHHEEEECTTSCC---SH-HHHHTHHHHHHHBCC-------------
T ss_pred CCce-EEEEC-CCCCCHHHHHHHHHHHHcCCCccceEEEEcCcccc---cH-HHHHHHHHHHHhhcc-------------
Confidence 4565 67777 222444556677777775432 356666665432 32 334444444332100
Q ss_pred hhcCCCCCEEEEecCccccCchhHHHHHHHHHHhhccCCeEEEEeecCCChhHhhhccHHHHhhcccceeeeCCc-chHH
Q 042861 225 EQGNYNNPVVVIVDDIERCCGSVLSDFILMFSEWVLKIPVILIMGVTTTLDAPRNILLSNVLQCLCPCMFTLGTP-SERM 303 (457)
Q Consensus 225 ~~~~~~~~lVvil~D~Esfd~~VL~DlI~llSs~~~~IP~vLVfGIATs~~~~~~~Lp~s~~slL~~~~F~~~s~-~~~l 303 (457)
.-...+-|+++++.+.+.....+.|..++..+-....|+++ ++.+ ..+.....++.. .|.+... .+-+
T Consensus 106 --~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~---~n~~----~~i~~~i~sR~~--~~~~~~l~~~~~ 174 (340)
T 1sxj_C 106 --IFSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVL---ANYA----HKLTPALLSQCT--RFRFQPLPQEAI 174 (340)
T ss_dssp --SSSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEE---ESCG----GGSCHHHHTTSE--EEECCCCCHHHH
T ss_pred --cCCCCceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEE---ecCc----cccchhHHhhce--eEeccCCCHHHH
Confidence 00123678999999999998888888888776655444332 3322 245555666544 4554432 3445
Q ss_pred HHHHHHHHhcCCCceeeChhhHHHHHHHHHhccCCHHHHHHHHHHH
Q 042861 304 DAIIEAVLVRQCSGFSISHKVAVFMRNYFVRQDGTITSFIRALKIA 349 (457)
Q Consensus 304 ~~I~e~vll~~~~~f~Lg~~v~~~L~d~F~~~d~Sv~~fi~~LK~a 349 (457)
.+.++.++... .+.+.+...+.+.. ..+.++...+..|+-+
T Consensus 175 ~~~l~~~~~~~--~~~i~~~~~~~i~~---~s~G~~r~~~~~l~~~ 215 (340)
T 1sxj_C 175 ERRIANVLVHE--KLKLSPNAEKALIE---LSNGDMRRVLNVLQSC 215 (340)
T ss_dssp HHHHHHHHHTT--TCCBCHHHHHHHHH---HHTTCHHHHHHHTTTT
T ss_pred HHHHHHHHHHc--CCCCCHHHHHHHHH---HcCCCHHHHHHHHHHH
Confidence 55556655443 45788887766643 4577888887777654
No 42
>2cx6_A Hypothetical protein YHCO; barstar, ribonuclease inhibitor, RSGI, structural genomics; 2.43A {Escherichia coli} SCOP: c.9.1.1
Probab=36.96 E-value=1.5e+02 Score=23.53 Aligned_cols=79 Identities=13% Similarity=0.114 Sum_probs=49.3
Q ss_pred EEEeeCCCCCCCCChhHHHHHHHHHHHcCCCCcccHHHHHHHHHhhcCCCCCEEEEecCccccCchhHHHHHHHHHHhhc
Q 042861 181 VANLSSLDFTAKSGIGGCLRSLLRQFLVAPLDAADISILASWYREQGNYNNPVVVIVDDIERCCGSVLSDFILMFSEWVL 260 (457)
Q Consensus 181 Vv~L~s~dc~~~~~i~~~Lk~ll~qli~~~~~~yDl~~L~~Wy~~~~~~~~~lVvil~D~Esfd~~VL~DlI~llSs~~~ 260 (457)
.+++.-.++. +.....+.+-++|--..-=..++++|.+....-. ...|++|+++++......-+..++.+|.....
T Consensus 3 ~~~iD~~~i~---~~~~f~~~~~~~~~~p~~fG~NlDAL~D~Lt~~~-~~~P~~i~~~~~~~~~~~~~~~ll~vf~da~~ 78 (90)
T 2cx6_A 3 IYTFDFDEIE---SQEDFYRDFSQTFGLAKDKVRDLDSLWDVLMNDV-LPLPLEIEFVHLGEKTRRRFGALILLFDEAEE 78 (90)
T ss_dssp EEEEETTSCC---SHHHHHHHHHHHTTCCTTSCSSHHHHHHHHHTTC-SCSSEEEEEESCCHHHHHHTHHHHHHHHHHHH
T ss_pred EEEEeCCCCC---CHHHHHHHHHHHhCCchhhCCCHHHHHHHHccCC-CCCCEEEEEEeCchhhHHHHHHHHHHHHHHHH
Confidence 3455555554 3444445544444221112446777777775311 14689999999976777788889999977665
Q ss_pred cCC
Q 042861 261 KIP 263 (457)
Q Consensus 261 ~IP 263 (457)
...
T Consensus 79 e~~ 81 (90)
T 2cx6_A 79 ELE 81 (90)
T ss_dssp HTT
T ss_pred hcC
Confidence 544
No 43
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=35.96 E-value=1.6e+02 Score=24.38 Aligned_cols=15 Identities=13% Similarity=0.496 Sum_probs=13.1
Q ss_pred CCCEEEEecCccccC
Q 042861 230 NNPVVVIVDDIERCC 244 (457)
Q Consensus 230 ~~~lVvil~D~Esfd 244 (457)
..+.||+|+|++.+.
T Consensus 114 ~~~~vl~iDe~~~l~ 128 (195)
T 1jbk_A 114 EGNVILFIDELHTMV 128 (195)
T ss_dssp TTTEEEEEETGGGGT
T ss_pred CCCeEEEEeCHHHHh
Confidence 468999999999985
No 44
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=35.64 E-value=29 Score=29.28 Aligned_cols=60 Identities=15% Similarity=0.056 Sum_probs=31.5
Q ss_pred CCCEEEEecCccccC-----chhHHHHHHHHHHhhccCCeEEEEeecCCChhH-hhhccHHHHhhcc
Q 042861 230 NNPVVVIVDDIERCC-----GSVLSDFILMFSEWVLKIPVILIMGVTTTLDAP-RNILLSNVLQCLC 290 (457)
Q Consensus 230 ~~~lVvil~D~Esfd-----~~VL~DlI~llSs~~~~IP~vLVfGIATs~~~~-~~~Lp~s~~slL~ 290 (457)
..+.||+|+|++.+. .....++..++.....+-.+.+| +.++..+.- ...+.....+++.
T Consensus 114 ~~~~vl~iDe~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~ii-~~~~~~~~~~~~~~~~~l~~R~~ 179 (187)
T 2p65_A 114 EGQVVMFIDEIHTVVGAGAVAEGALDAGNILKPMLARGELRCI-GATTVSEYRQFIEKDKALERRFQ 179 (187)
T ss_dssp TTSEEEEETTGGGGSSSSSSCTTSCCTHHHHHHHHHTTCSCEE-EEECHHHHHHHTTTCHHHHHHEE
T ss_pred CCceEEEEeCHHHhcccccccccchHHHHHHHHHHhcCCeeEE-EecCHHHHHHHHhccHHHHHhcC
Confidence 468899999999987 32223333334344444444333 333333211 1134566666665
No 45
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=33.89 E-value=3.2e+02 Score=26.09 Aligned_cols=71 Identities=18% Similarity=0.177 Sum_probs=45.0
Q ss_pred CCEEEEecCccccCchhHHHHHHHHHHhhccCCeEEEEeecCCChhHhhhccHHHHhhcccceeeeCCcchHHHHHHHHH
Q 042861 231 NPVVVIVDDIERCCGSVLSDFILMFSEWVLKIPVILIMGVTTTLDAPRNILLSNVLQCLCPCMFTLGTPSERMDAIIEAV 310 (457)
Q Consensus 231 ~~lVvil~D~Esfd~~VL~DlI~llSs~~~~IP~vLVfGIATs~~~~~~~Lp~s~~slL~~~~F~~~s~~~~l~~I~e~v 310 (457)
..=||+|++.+.++....+.|+..+-+.-...-|+ .+++.+ +.++....++ .-.|.-.+..+.. +.++..
T Consensus 82 ~~kvviIdead~lt~~a~naLLk~LEep~~~t~fI---l~t~~~----~kl~~tI~SR--~~~f~~l~~~~i~-~~L~~~ 151 (305)
T 2gno_A 82 TRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIV---LNTRRW----HYLLPTIKSR--VFRVVVNVPKEFR-DLVKEK 151 (305)
T ss_dssp SSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEE---EEESCG----GGSCHHHHTT--SEEEECCCCHHHH-HHHHHH
T ss_pred CceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEE---EEECCh----HhChHHHHce--eEeCCCCCHHHHH-HHHHHH
Confidence 45699999999999999988888777654433333 334443 3566677777 4445555544444 444444
Q ss_pred H
Q 042861 311 L 311 (457)
Q Consensus 311 l 311 (457)
+
T Consensus 152 ~ 152 (305)
T 2gno_A 152 I 152 (305)
T ss_dssp H
T ss_pred h
Confidence 3
No 46
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=31.79 E-value=5.5e+02 Score=28.14 Aligned_cols=187 Identities=13% Similarity=0.160 Sum_probs=104.9
Q ss_pred eEEEecCCCCCCchHHHHHHHHHHhhhcCcEEEEeeCCCCCCCCChhHHHHHHHHHHHcCCC--CcccH-HHHHHHHHhh
Q 042861 150 TGLVLTKNMEFVDDLLTFEELGRHLKSQGCHVANLSSLDFTAKSGIGGCLRSLLRQFLVAPL--DAADI-SILASWYREQ 226 (457)
Q Consensus 150 TAllltGnin~~dh~~~F~~L~~~L~~~~~~Vv~L~s~dc~~~~~i~~~Lk~ll~qli~~~~--~~yDl-~~L~~Wy~~~ 226 (457)
..+++.|..- +.--.+-..|...+...+..++.++..++..+..+ ..+++... ..|+- ..+......
T Consensus 589 ~~vLl~Gp~G-tGKT~lA~~la~~~~~~~~~~i~i~~~~~~~~~~~--------s~l~g~~~~~~G~~~~g~l~~~~~~- 658 (854)
T 1qvr_A 589 GSFLFLGPTG-VGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAV--------SRLIGAPPGYVGYEEGGQLTEAVRR- 658 (854)
T ss_dssp EEEEEBSCSS-SSHHHHHHHHHHHHHSSGGGEEEECTTTCCSSGGG--------GGC--------------CHHHHHHH-
T ss_pred eEEEEECCCC-CCHHHHHHHHHHHhcCCCCcEEEEechhccchhHH--------HHHcCCCCCCcCccccchHHHHHHh-
Confidence 3677777222 44445557777777554445666766665431111 11221110 01111 233333332
Q ss_pred cCCCCCEEEEecCccccCchhHHHHHHHHHHhhc------c--CC-eEEEEeecCCC------h-------------h--
Q 042861 227 GNYNNPVVVIVDDIERCCGSVLSDFILMFSEWVL------K--IP-VILIMGVTTTL------D-------------A-- 276 (457)
Q Consensus 227 ~~~~~~lVvil~D~Esfd~~VL~DlI~llSs~~~------~--IP-~vLVfGIATs~------~-------------~-- 276 (457)
.+.-||+|+++|..++.+++-|+.++..-.- + .. .++|+ +|+. + .
T Consensus 659 ---~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~g~~vd~~~~iiI~--tsn~~~~~~~~~~~~~~~~~~l~~~v~ 733 (854)
T 1qvr_A 659 ---RPYSVILFDEIEKAHPDVFNILLQILDDGRLTDSHGRTVDFRNTVIIL--TSNLGSPLILEGLQKGWPYERIRDEVF 733 (854)
T ss_dssp ---CSSEEEEESSGGGSCHHHHHHHHHHHTTTEECCSSSCCEECTTEEEEE--ECCTTHHHHHHHHHTTCCHHHHHHHHH
T ss_pred ---CCCeEEEEecccccCHHHHHHHHHHhccCceECCCCCEeccCCeEEEE--ecCcChHHHhhhcccccchHHHHHHHH
Confidence 2456999999999999999999999875431 1 11 12332 3433 1 1
Q ss_pred --HhhhccHHHHhhcccceeeeCCcchHHHHHHHHHHhc-------CCCceeeChhhHHHHHHHHHhccCCHHHHHHHHH
Q 042861 277 --PRNILLSNVLQCLCPCMFTLGTPSERMDAIIEAVLVR-------QCSGFSISHKVAVFMRNYFVRQDGTITSFIRALK 347 (457)
Q Consensus 277 --~~~~Lp~s~~slL~~~~F~~~s~~~~l~~I~e~vll~-------~~~~f~Lg~~v~~~L~d~F~~~d~Sv~~fi~~LK 347 (457)
..+.+......++.....-.+...+-+..|++..+.. ....+.+++.++++|.++-+...+++..+.+.++
T Consensus 734 ~~~~~~f~~~l~~Rl~~~i~~~pl~~edi~~i~~~~l~~~~~~~~~~~~~~~~~~~a~~~L~~~~~~~~gn~R~L~~~i~ 813 (854)
T 1qvr_A 734 KVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQLSYLRARLAEKRISLELTEAAKDFLAERGYDPVFGARPLRRVIQ 813 (854)
T ss_dssp HHHHTTSCHHHHHTCSBCCBCCCCCHHHHHHHHHHHHHHHHHHHHTTTCEEEECHHHHHHHHHHHCBTTTBTSTHHHHHH
T ss_pred HHHHhhCCHHHHHhcCeEEeCCCCCHHHHHHHHHHHHHHHHHHHHhCCceEEECHHHHHHHHHcCCCCCCChHHHHHHHH
Confidence 2456677888888544433444566677777766542 2335789999999998876644566666666555
Q ss_pred HHHH
Q 042861 348 IACS 351 (457)
Q Consensus 348 ~a~M 351 (457)
-+++
T Consensus 814 ~~~~ 817 (854)
T 1qvr_A 814 RELE 817 (854)
T ss_dssp HHTH
T ss_pred HHHH
Confidence 5544
No 47
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=29.93 E-value=3.4e+02 Score=26.18 Aligned_cols=78 Identities=13% Similarity=0.108 Sum_probs=50.7
Q ss_pred hccHHHHhhcccceeeeCCcc-hHHHHHHH-----------HHHhcCCCceeeChhhHHHHHHHHHhccCCHHHHHHHHH
Q 042861 280 ILLSNVLQCLCPCMFTLGTPS-ERMDAIIE-----------AVLVRQCSGFSISHKVAVFMRNYFVRQDGTITSFIRALK 347 (457)
Q Consensus 280 ~Lp~s~~slL~~~~F~~~s~~-~~l~~I~e-----------~vll~~~~~f~Lg~~v~~~L~d~F~~~d~Sv~~fi~~LK 347 (457)
.+.....+++.. .+.+++-. +-+..+++ +.+......+.+++.++++|..+-.....++..+.+.+.
T Consensus 255 ~~~p~l~~R~~~-~i~~~~l~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~R~L~~~le 333 (376)
T 1um8_A 255 GLIPELIGRLPV-LSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIAQLALERKTGARGLRAIIE 333 (376)
T ss_dssp TCCHHHHTTCCE-EEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTTCTGGGHHHHHH
T ss_pred CCChHHhcCCCc-eeeccCCCHHHHHHHHhhhHHHHHHHHHHHHhhcCceEEECHHHHHHHHHHhcccccCcHHHHHHHH
Confidence 456677777742 34444433 33344443 112223446889999999999887766788888888888
Q ss_pred HHHHhhhccCc
Q 042861 348 IACSQHFSMEP 358 (457)
Q Consensus 348 ~a~M~HFy~nP 358 (457)
-+++...+..|
T Consensus 334 ~~~~~~~~~~~ 344 (376)
T 1um8_A 334 DFCLDIMFDLP 344 (376)
T ss_dssp HHHHHHHHTGG
T ss_pred HHHHHHHhhcc
Confidence 88887776544
No 48
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=28.52 E-value=3.8e+02 Score=25.30 Aligned_cols=118 Identities=14% Similarity=0.140 Sum_probs=76.2
Q ss_pred EEEEecCccccCchhHHHHHHHHHHhh---------ccCCeEEEEeecCCCh-hH-hhhccHHHHhhcccceeeeCCcch
Q 042861 233 VVVIVDDIERCCGSVLSDFILMFSEWV---------LKIPVILIMGVTTTLD-AP-RNILLSNVLQCLCPCMFTLGTPSE 301 (457)
Q Consensus 233 lVvil~D~Esfd~~VL~DlI~llSs~~---------~~IP~vLVfGIATs~~-~~-~~~Lp~s~~slL~~~~F~~~s~~~ 301 (457)
-+++|++++.++..+...|+.++.... ....+.+|+.-...++ .+ ...+......+|..-.+.+++-.+
T Consensus 98 g~L~LDEi~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~riI~atn~~l~~~v~~g~fr~~L~~Rl~~~~i~lPpL~e 177 (304)
T 1ojl_A 98 GTLFLDEIGDISPLMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRDLAEEVSAGRFRQDLYYRLNVVAIEMPSLRQ 177 (304)
T ss_dssp SEEEEESCTTCCHHHHHHHHHHHHSSBCCBTTBCCCCBCCCEEEEEESSCHHHHHHHTSSCHHHHHHHSSEEEECCCSGG
T ss_pred CEEEEeccccCCHHHHHHHHHHHhcCEeeecCCcccccCCeEEEEecCccHHHHHHhCCcHHHHHhhcCeeEEeccCHHH
Confidence 379999999999999998888887653 1233444443222222 22 235778888899888888888664
Q ss_pred H---HHHHHHHHHhc----CC-CceeeChhhHHHHHHHHHhccCCHHHHHHHHHHHHHh
Q 042861 302 R---MDAIIEAVLVR----QC-SGFSISHKVAVFMRNYFVRQDGTITSFIRALKIACSQ 352 (457)
Q Consensus 302 ~---l~~I~e~vll~----~~-~~f~Lg~~v~~~L~d~F~~~d~Sv~~fi~~LK~a~M~ 352 (457)
+ +..+++.++.. .. ....+++.+++.|..+- ...+|..+...++.+++.
T Consensus 178 R~edi~~l~~~~l~~~~~~~~~~~~~~s~~a~~~L~~~~--wpGnvReL~~~l~~~~~~ 234 (304)
T 1ojl_A 178 RREDIPLLADHFLRRFAERNRKVVKGFTPQAMDLLIHYD--WPGNIRELENAIERAVVL 234 (304)
T ss_dssp GGGGHHHHHHHHHHHHHHHTTCCCCCBCHHHHHHHHHCC--CSSHHHHHHHHHHHHHHH
T ss_pred hHhhHHHHHHHHHHHHHHHhccCccCCCHHHHHHHHcCC--CCCCHHHHHHHHHHHHHh
Confidence 3 33344444332 11 23578999888776531 246788888888887763
No 49
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=24.69 E-value=2e+02 Score=29.08 Aligned_cols=123 Identities=17% Similarity=0.170 Sum_probs=73.1
Q ss_pred HHHHHHHhhcCCCCCEEEEecCccccCchhHHHHHHHHHHhhccCCeEEEEeec--------CC-ChhHhhhccHHHHhh
Q 042861 218 ILASWYREQGNYNNPVVVIVDDIERCCGSVLSDFILMFSEWVLKIPVILIMGVT--------TT-LDAPRNILLSNVLQC 288 (457)
Q Consensus 218 ~L~~Wy~~~~~~~~~lVvil~D~Esfd~~VL~DlI~llSs~~~~IP~vLVfGIA--------Ts-~~~~~~~Lp~s~~sl 288 (457)
.+..|.......-.|-|+++.+.+..+....+-|+..+.+.... ++|||-. |. .... ..||....++
T Consensus 282 ~l~~~~~~g~~~v~~~VliIDEa~~l~~~a~~aLlk~lEe~~~~---~~il~tn~~~~~i~~~~~~~~~-~~l~~~i~sR 357 (456)
T 2c9o_A 282 VVNKYIDQGIAELVPGVLFVDEVHMLDIECFTYLHRALESSIAP---IVIFASNRGNCVIRGTEDITSP-HGIPLDLLDR 357 (456)
T ss_dssp HHHHHHHTTSEEEEECEEEEESGGGCBHHHHHHHHHHTTSTTCC---EEEEEECCSEEECBTTSSCEEE-TTCCHHHHTT
T ss_pred HHHHHHHhccccccceEEEEechhhcCHHHHHHHHHHhhccCCC---EEEEecCCcccccccccccccc-ccCChhHHhh
Confidence 44556543321112349999999999999999998888877554 4666541 21 2222 3667788888
Q ss_pred cccceeeeCCcchHHHHHHHHHHhcCCCceeeChhhHHHHHHHHHhccCCHHHHHHHHHHH
Q 042861 289 LCPCMFTLGTPSERMDAIIEAVLVRQCSGFSISHKVAVFMRNYFVRQDGTITSFIRALKIA 349 (457)
Q Consensus 289 L~~~~F~~~s~~~~l~~I~e~vll~~~~~f~Lg~~v~~~L~d~F~~~d~Sv~~fi~~LK~a 349 (457)
+..-.|.-.+..+. .++++...... ...+++.++..+...-. +.+...-+.-++-|
T Consensus 358 ~~~~~~~~~~~~e~-~~iL~~~~~~~--~~~~~~~~~~~i~~~a~--~g~~r~a~~ll~~a 413 (456)
T 2c9o_A 358 VMIIRTMLYTPQEM-KQIIKIRAQTE--GINISEEALNHLGEIGT--KTTLRYSVQLLTPA 413 (456)
T ss_dssp EEEEECCCCCHHHH-HHHHHHHHHHH--TCCBCHHHHHHHHHHHH--HSCHHHHHHTHHHH
T ss_pred cceeeCCCCCHHHH-HHHHHHHHHHh--CCCCCHHHHHHHHHHcc--CCCHHHHHHHHHHH
Confidence 87755555444443 34444433222 35688888877766431 35655555555544
No 50
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=21.89 E-value=2.2e+02 Score=26.01 Aligned_cols=111 Identities=17% Similarity=0.200 Sum_probs=58.3
Q ss_pred CCEEEEecCcccc------CchhHHHHHHHHHHhhcc---CC-eEEEEeecCCChhHhhhccHHHHhhcccceeeeCCcc
Q 042861 231 NPVVVIVDDIERC------CGSVLSDFILMFSEWVLK---IP-VILIMGVTTTLDAPRNILLSNVLQCLCPCMFTLGTPS 300 (457)
Q Consensus 231 ~~lVvil~D~Esf------d~~VL~DlI~llSs~~~~---IP-~vLVfGIATs~~~~~~~Lp~s~~slL~~~~F~~~s~~ 300 (457)
.+-||+|+|++.+ ++..-..++..|...... .+ -++|++.+..++.+... ...+++ ...+.+++-.
T Consensus 124 ~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~ii~ttn~~~~l~~~---~l~~rf-~~~i~~p~l~ 199 (272)
T 1d2n_A 124 QLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKDVLQEM---EMLNAF-STTIHVPNIA 199 (272)
T ss_dssp SEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEEEEEESCHHHHHHT---TCTTTS-SEEEECCCEE
T ss_pred CCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEEEEecCChhhcchh---hhhccc-ceEEcCCCcc
Confidence 5789999999986 333334444444444433 22 34566655555444321 112222 3346776655
Q ss_pred hHHHHHHHHHHhcCCCceeeChhhHHHHHHHHHhcc--CCHHHHHHHHHHHH
Q 042861 301 ERMDAIIEAVLVRQCSGFSISHKVAVFMRNYFVRQD--GTITSFIRALKIAC 350 (457)
Q Consensus 301 ~~l~~I~e~vll~~~~~f~Lg~~v~~~L~d~F~~~d--~Sv~~fi~~LK~a~ 350 (457)
+. +.+.+- +... -.+++..+..|......+. .++...+..++.|.
T Consensus 200 ~r-~~i~~i-~~~~---~~~~~~~~~~l~~~~~g~~~~g~ir~l~~~l~~a~ 246 (272)
T 1d2n_A 200 TG-EQLLEA-LELL---GNFKDKERTTIAQQVKGKKVWIGIKKLLMLIEMSL 246 (272)
T ss_dssp EH-HHHHHH-HHHH---TCSCHHHHHHHHHHHTTSEEEECHHHHHHHHHHHT
T ss_pred HH-HHHHHH-HHhc---CCCCHHHHHHHHHHhcCCCccccHHHHHHHHHHHh
Confidence 43 223222 2221 1457777777777665432 25777777776654
No 51
>1y7q_A AW-1, zinc finger protein 174; SCAN domain, retroviral capsid C-terminal domain, dimer, C2H2 zinc finger associated, transcription; NMR {Homo sapiens} SCOP: a.28.3.2
Probab=20.16 E-value=50 Score=27.25 Aligned_cols=16 Identities=38% Similarity=0.405 Sum_probs=13.9
Q ss_pred hHHHHHHHHhcCCccc
Q 042861 438 QLLDLLCEALNPALYS 453 (457)
Q Consensus 438 ~l~~~~~~a~~~~~~~ 453 (457)
+|++|+|+||+|+.++
T Consensus 32 rLreLC~qWLrPe~hT 47 (98)
T 1y7q_A 32 QLRQLCRQWLQPELHT 47 (98)
T ss_dssp HHHHHHHHHHCCSSCC
T ss_pred HHHHHHHHHCCccccc
Confidence 7899999999999775
Done!