BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042863
(680 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1Z6T|A Chain A, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|B Chain B, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|C Chain C, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|D Chain D, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
Length = 591
Score = 55.8 bits (133), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 90/352 (25%), Positives = 152/352 (43%), Gaps = 61/352 (17%)
Query: 8 REKIIEALMQTSSGESETVSVIPIVGIGGLGKTALAQLVFNDQRVEEH-FELKI-WICIS 65
R+K++ A+ Q S + I G+ G GK+ LA D + E F + W+ +
Sbjct: 129 RKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVG 188
Query: 66 EDFGERQIM------TKIIKSITGQNQGDLDIEQLQRILRVCLNGK--RYLLVMDDVWNE 117
+ +M T++ + + + L+IE+ + LR+ + K R LL++DDVW+
Sbjct: 189 KQDKSGLLMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDS 248
Query: 118 DPKVWDKLKSLLSGGAKGSKILVTTRSNKVA-SVMGTR-----GGTTGYNLQGLPLEDCL 171
W +L +IL+TTR V SVMG + + G +GL + L
Sbjct: 249 ----W-----VLKAFDSQCQILLTTRDKSVTDSVMGPKYVVPVESSLGKE-KGLEI---L 295
Query: 172 SLFMKCAFKEERDKHPNLVKIGEEIVKKCGGIPLAVRTLGSLLYCSTDEHDWEYV---RD 228
SLF+ K +L + I+K+C G PL V +G+LL + WEY
Sbjct: 296 SLFVNM-------KKADLPEQAHSIIKECKGSPLVVSLIGALLRDFPNR--WEYYLKQLQ 346
Query: 229 NEIWKLEQKAND-----ILPVLRFSYDQLPPRLKQCVAYCCIFPKDYQFSSVYLVQFWMA 283
N+ +K +K++ + + S + L +K I KD + + L W
Sbjct: 347 NKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDM 406
Query: 284 QGLLHPLNENDELDDIGMRSLKQLCSRS-FFHDLVRGFEMFTFKMHDLIHDL 334
E +E++DI L++ ++S F D R + F + +HDL D
Sbjct: 407 --------ETEEVEDI----LQEFVNKSLLFCD--RNGKSFRYYLHDLQVDF 444
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 89/348 (25%), Positives = 151/348 (43%), Gaps = 61/348 (17%)
Query: 8 REKIIEALMQTSSGESETVSVIPIVGIGGLGKTALAQLVFNDQRVEEH-FELKI-WICIS 65
R+K++ A+ Q S + I G+ G GK+ LA D + E F + W+ +
Sbjct: 135 RKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVG 194
Query: 66 EDFGERQIM------TKIIKSITGQNQGDLDIEQLQRILRVCLNGK--RYLLVMDDVWNE 117
+ +M T++ + + + L+IE+ + LR+ + K R LL++DDVW+
Sbjct: 195 KQDKSGLLMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDS 254
Query: 118 DPKVWDKLKSLLSGGAKGSKILVTTRSNKVA-SVMGTR-----GGTTGYNLQGLPLEDCL 171
W +L +IL+TTR V SVMG + + G +GL + L
Sbjct: 255 ----W-----VLKAFDSQCQILLTTRDKSVTDSVMGPKYVVPVESSLGKE-KGLEI---L 301
Query: 172 SLFMKCAFKEERDKHPNLVKIGEEIVKKCGGIPLAVRTLGSLLYCSTDEHDWEYV---RD 228
SLF+ K +L + I+K+C G PL V +G+LL + WEY
Sbjct: 302 SLFVNM-------KKADLPEQAHSIIKECKGSPLVVSLIGALLRDFPNR--WEYYLKQLQ 352
Query: 229 NEIWKLEQKAND-----ILPVLRFSYDQLPPRLKQCVAYCCIFPKDYQFSSVYLVQFWMA 283
N+ +K +K++ + + S + L +K I KD + + L W
Sbjct: 353 NKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDM 412
Query: 284 QGLLHPLNENDELDDIGMRSLKQLCSRS-FFHDLVRGFEMFTFKMHDL 330
E +E++DI L++ ++S F D R + F + +HDL
Sbjct: 413 --------ETEEVEDI----LQEFVNKSLLFCD--RNGKSFRYYLHDL 446
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 88/355 (24%), Positives = 146/355 (41%), Gaps = 67/355 (18%)
Query: 8 REKIIEALMQTSSGESETVSVIPIVGIGGLGKTALAQLVFNDQRVEEH-FELKI-WICIS 65
R+K++ A+ Q + + I G+ G GK+ LA D + E F + W+ I
Sbjct: 129 RKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIG 188
Query: 66 EDFGERQIM------TKIIKSITGQNQGDLDIEQLQRILRVCLNGK--RYLLVMDDVWNE 117
+ +M ++ + + + L+IE+ + LRV + K R LL++DDVW
Sbjct: 189 KQDKSGLLMKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVW-- 246
Query: 118 DPKVWDKLKSLLSGGAKGSKILVTTRSNKVA-SVMGTRGGTTGYNLQGLPLE-------- 168
DP V L +IL+TTR V SVMG + +P+E
Sbjct: 247 DPWV-------LKAFDNQCQILLTTRDKSVTDSVMGPK--------HVVPVESGLGREKG 291
Query: 169 -DCLSLFMKCAFKEERDKHPNLVKIGEEIVKKCGGIPLAVRTLGSLLYCSTDEHDWEYV- 226
+ LSLF+ K +L I+K+C G PL V +G+LL + W Y
Sbjct: 292 LEILSLFVNM-------KKEDLPAEAHSIIKECKGSPLVVSLIGALLRDFPNR--WAYYL 342
Query: 227 --RDNEIWKLEQKAND-----ILPVLRFSYDQLPPRLKQCVAYCCIFPKDYQFSSVYLVQ 279
N+ +K +K++ + + S + L +K I KD + + L
Sbjct: 343 RQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCV 402
Query: 280 FWMAQGLLHPLNENDELDDIGMRSLKQLCSRSFFHDLVRGFEMFTFKMHDLIHDL 334
W E +E++DI L++ ++S R + F + +HDL D
Sbjct: 403 LWDL--------ETEEVEDI----LQEFVNKSLLF-CNRNGKSFCYYLHDLQVDF 444
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 87/355 (24%), Positives = 145/355 (40%), Gaps = 67/355 (18%)
Query: 8 REKIIEALMQTSSGESETVSVIPIVGIGGLGKTALAQLVFNDQRVEEH-FELKI-WICIS 65
R+K++ A+ Q + + I G+ G GK+ LA D + E F + W+ I
Sbjct: 136 RKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIG 195
Query: 66 EDFGERQIM------TKIIKSITGQNQGDLDIEQLQRILRVCLNGK--RYLLVMDDVWNE 117
+ +M ++ + + + L+IE+ + LRV + K R LL++DDVW
Sbjct: 196 KQDKSGLLMKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVW-- 253
Query: 118 DPKVWDKLKSLLSGGAKGSKILVTTRSNKVA-SVMGTRGGTTGYNLQGLPLE-------- 168
DP V L +IL+TT V SVMG + +P+E
Sbjct: 254 DPWV-------LKAFDNQCQILLTTSDKSVTDSVMGPK--------HVVPVESGLGREKG 298
Query: 169 -DCLSLFMKCAFKEERDKHPNLVKIGEEIVKKCGGIPLAVRTLGSLLYCSTDEHDWEYV- 226
+ LSLF+ K +L I+K+C G PL V +G+LL + W Y
Sbjct: 299 LEILSLFVNM-------KKEDLPAEAHSIIKECKGSPLVVSLIGALLRDFPNR--WAYYL 349
Query: 227 --RDNEIWKLEQKAND-----ILPVLRFSYDQLPPRLKQCVAYCCIFPKDYQFSSVYLVQ 279
N+ +K +K++ + + S + L +K I KD + + L
Sbjct: 350 RQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCV 409
Query: 280 FWMAQGLLHPLNENDELDDIGMRSLKQLCSRSFFHDLVRGFEMFTFKMHDLIHDL 334
W E +E++DI L++ ++S R + F + +HDL D
Sbjct: 410 LWDL--------ETEEVEDI----LQEFVNKSLLF-CNRNGKSFCYYLHDLQVDF 451
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Query: 399 VRSCISKSQFLRVLNLSGSAIEALPKEIGNLKHMRYLDLSRNYKIKKLP 447
+ + I K FL L L+G+++ LP EI NL ++R LDLS N ++ LP
Sbjct: 239 ISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHN-RLTSLP 286
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 38.1 bits (87), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 56/134 (41%), Gaps = 24/134 (17%)
Query: 409 LRVLNLSGSAIEALPKEIGNLKHMRYLDLSRNYKIKKLPNAICELQSLQTXXXXXXXXXX 468
L+ L L + I +LP I NL++++ L + RN + L AI L L+
Sbjct: 185 LQSLRLEWTGIRSLPASIANLQNLKSLKI-RNSPLSALGPAIHHLPKLEEL--------- 234
Query: 469 XXPKDIRYLVSLRVFEVTTKQKSLQDSGIGCLVSLRCLIISHCRNLEYLFDDIDQLRVLR 528
D+R +LR + G L+ LI+ C NL L DI +L L
Sbjct: 235 ----DLRGCTALRNYPPI----------FGGRAPLKRLILKDCSNLLTLPLDIHRLTQLE 280
Query: 529 SLLIAGCPCLISLP 542
L + GC L LP
Sbjct: 281 KLDLRGCVNLSRLP 294
Score = 33.1 bits (74), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 64/167 (38%), Gaps = 16/167 (9%)
Query: 409 LRVLNLSGSAIEALPKEIGNLKHMRYLDLSRNYKIKKLPNAIC------------ELQSL 456
L L L+ + + ALP I +L +R L + ++ +LP + LQSL
Sbjct: 129 LETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSL 188
Query: 457 QTXXXXXXXXXXXXPKDIRYLVSLRVFEVTTKQKSLQDSGIGCLVSLRCLIISHCRNLEY 516
+ P I L +L+ ++ S I L L L + C L
Sbjct: 189 R----LEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRN 244
Query: 517 LFDDIDQLRVLRSLLIAGCPCLISLPPAMRYLSSLETLMFVECESLS 563
L+ L++ C L++LP + L+ LE L C +LS
Sbjct: 245 YPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLS 291
Score = 30.4 bits (67), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 4/52 (7%)
Query: 610 RNFQALEGLVIGNCPKLLSLPEDMLHLKTLR---IRGCPALSDRCKPLTGED 658
+ F LE L + P L +LP + L LR IR CP L++ +PL D
Sbjct: 124 QQFAGLETLTLARNP-LRALPASIASLNRLRELSIRACPELTELPEPLASTD 174
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 33.5 bits (75), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 398 FVRSCISKSQFLRVLNLSGSAIE-ALPKEIGNLKHMRYLDLSRNYKIKKLPNAICELQSL 456
++ I +L +LNL + I ++P E+G+L+ + LDLS N ++P A+ L L
Sbjct: 644 YIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTML 703
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 33.5 bits (75), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 398 FVRSCISKSQFLRVLNLSGSAIE-ALPKEIGNLKHMRYLDLSRNYKIKKLPNAICELQSL 456
++ I +L +LNL + I ++P E+G+L+ + LDLS N ++P A+ L L
Sbjct: 647 YIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTML 706
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 37/86 (43%), Gaps = 2/86 (2%)
Query: 412 LNLSGSAIEALPKEIGNLKHMRYLDLSRNYKIKKLPN-AICELQSLQTXXXXXXXXXXXX 470
L L G+ +PKE+ N KH+ +DLS N +I L N + + L T
Sbjct: 36 LYLDGNQFTLVPKELSNYKHLTLIDLSNN-RISTLSNQSFSNMTQLLTLILSYNRLRCIP 94
Query: 471 PKDIRYLVSLRVFEVTTKQKSLQDSG 496
P+ L SLR+ + S+ G
Sbjct: 95 PRTFDGLKSLRLLSLHGNDISVVPEG 120
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 48/175 (27%), Positives = 72/175 (41%), Gaps = 38/175 (21%)
Query: 402 CISKSQFLRVLNLSGSAIEA---LPKEIGNLKHMRYLDLSRNYKIKKLPNAICELQSLQT 458
C+ K + L+ L+LS S IEA ++ NL+H++YL+LS N + A E L+
Sbjct: 344 CLEKLENLQKLDLSHSDIEASDCCNLQLKNLRHLQYLNLSYNEPLGLEDQAFKECPQLEL 403
Query: 459 XXXXXXXXXXXXPKDIRYLVSLRVFEVTTKQKSLQDSGIGCLVSLRCLIISHCRNLEYLF 518
V+ V Q+ L LR L +SHC L
Sbjct: 404 LD-----------------VAFTHLHVKAPHSPFQN-----LHLLRVLNLSHC-----LL 436
Query: 519 DDIDQ-----LRVLRSLLIAGCPCL---ISLPPAMRYLSSLETLMFVECESLSLN 565
D +Q L+ LR L + G IS ++ + SLE L+ C LS++
Sbjct: 437 DTSNQHLLAGLQDLRHLNLQGNSFQDGSISKTNLLQMVGSLEILILSSCNLLSID 491
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 70/148 (47%), Gaps = 13/148 (8%)
Query: 355 KRVRHLSFVGANASR-KDFSRFLSDLGRVRTIFFSINDEKVSQSFVRSCISKSQFLRVLN 413
+++ HL F +N + +FS FLS L + + S +V+ + + + +S L VL
Sbjct: 420 EQLEHLDFQHSNLKQMSEFSVFLS-LRNLIYLDISHTHTRVAFNGIFNGLSS---LEVLK 475
Query: 414 LSGSAIEA--LPKEIGNLKHMRYLDLSRNYKIKKLPNAICELQSLQTXXXXXXXXXXXXP 471
++G++ + LP L+++ +LDLS+ + P A L SLQ
Sbjct: 476 MAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDT 535
Query: 472 KDIRYLVSLRVFE------VTTKQKSLQ 493
+ L SL+V + +T+K++ LQ
Sbjct: 536 FPYKCLNSLQVLDYSLNHIMTSKKQELQ 563
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 70/148 (47%), Gaps = 13/148 (8%)
Query: 355 KRVRHLSFVGANASR-KDFSRFLSDLGRVRTIFFSINDEKVSQSFVRSCISKSQFLRVLN 413
+++ HL F +N + +FS FLS L + + S +V+ + + + +S L VL
Sbjct: 396 EQLEHLDFQHSNLKQMSEFSVFLS-LRNLIYLDISHTHTRVAFNGIFNGLSS---LEVLK 451
Query: 414 LSGSAIEA--LPKEIGNLKHMRYLDLSRNYKIKKLPNAICELQSLQTXXXXXXXXXXXXP 471
++G++ + LP L+++ +LDLS+ + P A L SLQ
Sbjct: 452 MAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDT 511
Query: 472 KDIRYLVSLRVFE------VTTKQKSLQ 493
+ L SL+V + +T+K++ LQ
Sbjct: 512 FPYKCLNSLQVLDYSLNHIMTSKKQELQ 539
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 30.0 bits (66), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 70/148 (47%), Gaps = 13/148 (8%)
Query: 355 KRVRHLSFVGANASR-KDFSRFLSDLGRVRTIFFSINDEKVSQSFVRSCISKSQFLRVLN 413
+++ HL F +N + +FS FLS L + + S +V+ + + + +S L VL
Sbjct: 101 EQLEHLDFQHSNLKQMSEFSVFLS-LRNLIYLDISHTHTRVAFNGIFNGLSS---LEVLK 156
Query: 414 LSGSAIEA--LPKEIGNLKHMRYLDLSRNYKIKKLPNAICELQSLQTXXXXXXXXXXXXP 471
++G++ + LP L+++ +LDLS+ + P A L SLQ
Sbjct: 157 MAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDT 216
Query: 472 KDIRYLVSLRVFE------VTTKQKSLQ 493
+ L SL+V + +T+K++ LQ
Sbjct: 217 FPYKCLNSLQVLDYSLNHIMTSKKQELQ 244
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 29.3 bits (64), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 55/106 (51%), Gaps = 7/106 (6%)
Query: 355 KRVRHLSFVGANASR-KDFSRFLSDLGRVRTIFFSINDEKVSQSFVRSCISKSQFLRVLN 413
+++ HL F +N + +FS FLS L + + S +V+ + + + +S L VL
Sbjct: 396 EQLEHLDFQHSNLKQMSEFSVFLS-LRNLIYLDISHTHTRVAFNGIFNGLSS---LEVLK 451
Query: 414 LSGSAIEA--LPKEIGNLKHMRYLDLSRNYKIKKLPNAICELQSLQ 457
++G++ + LP L+++ +LDLS+ + P A L SLQ
Sbjct: 452 MAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQ 497
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 29.3 bits (64), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 52/124 (41%), Gaps = 6/124 (4%)
Query: 410 RVLNLSGSAIEALPKE-IGNLKHMRYLDLSRNYKIKKLPNAICELQSLQTXXXXXXXXXX 468
R LNL ++I+ + + +L+H+ L LS+N K A L SL T
Sbjct: 38 RYLNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTT 97
Query: 469 XXPKDIRYLVSLRVFEVTTKQ-KSLQDSGIGCLVSLRCLIISHCRNLEYL----FDDIDQ 523
+ YL LR + +S+ + SLR L + + LEY+ F+ +
Sbjct: 98 VPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLVN 157
Query: 524 LRVL 527
LR L
Sbjct: 158 LRYL 161
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 29.3 bits (64), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 36/50 (72%), Gaps = 2/50 (4%)
Query: 409 LRVLNLSGSAIEALPKEIGNLKHMRYLDLSRNYKIKKLPNAICE-LQSLQ 457
++VL+L + I ++PK++ +L+ ++ L+++ N ++K +P+ + + L SLQ
Sbjct: 452 VKVLDLHNNRIMSIPKDVTHLQALQELNVASN-QLKSVPDGVFDRLTSLQ 500
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 28.9 bits (63), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 52/124 (41%), Gaps = 6/124 (4%)
Query: 410 RVLNLSGSAIEALPKE-IGNLKHMRYLDLSRNYKIKKLPNAICELQSLQTXXXXXXXXXX 468
R LNL ++I+ + + +L+H+ L LS+N K A L SL T
Sbjct: 38 RYLNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTT 97
Query: 469 XXPKDIRYLVSLRVFEVTTKQ-KSLQDSGIGCLVSLRCLIISHCRNLEYL----FDDIDQ 523
+ YL LR + +S+ + SLR L + + LEY+ F+ +
Sbjct: 98 VPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLVN 157
Query: 524 LRVL 527
LR L
Sbjct: 158 LRYL 161
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.139 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,485,218
Number of Sequences: 62578
Number of extensions: 730462
Number of successful extensions: 1851
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 1814
Number of HSP's gapped (non-prelim): 43
length of query: 680
length of database: 14,973,337
effective HSP length: 105
effective length of query: 575
effective length of database: 8,402,647
effective search space: 4831522025
effective search space used: 4831522025
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)